BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 026764
(233 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P34091|RL6_MESCR 60S ribosomal protein L6 OS=Mesembryanthemum crystallinum GN=RPL6
PE=2 SV=1
Length = 234
Score = 351 bits (901), Expect = 2e-96, Method: Compositional matrix adjust.
Identities = 181/224 (80%), Positives = 201/224 (89%)
Query: 10 TSRNPDLIRGVGKFSRSKMYHKRGLWAIKAKNGGVFPKHDPKPAAAETPAKPPKFYPADD 69
SRNP+L+RG+GK+SRSKMYHKRGLWAIKAKNGGVFPKH PK A ++ KPPKFYPADD
Sbjct: 11 VSRNPELVRGIGKYSRSKMYHKRGLWAIKAKNGGVFPKHAPKSADSKAVEKPPKFYPADD 70
Query: 70 VKKPLVNKRKHKPTKLRASITPGTVFILLAGRFMGKRVVFLKQLTSGLLLVTGPFKVNGV 129
VKKPL+NKRK KPTKLRASITPGTV I+LAGRF GKRVVFLKQL+SGLLLVTGPFKVNGV
Sbjct: 71 VKKPLINKRKPKPTKLRASITPGTVLIILAGRFKGKRVVFLKQLSSGLLLVTGPFKVNGV 130
Query: 130 PLRRVNQSYVIATSTKVDISGVDLGKFDDQYFEKEAEKKKKKGEGEFFEAEKEEKKVLPD 189
PLRRVNQ+YVIATSTKVDISGV++ KFDD+YF K+AEKK KKGEGEFFEAEK+E VLP
Sbjct: 131 PLRRVNQAYVIATSTKVDISGVNVEKFDDKYFGKKAEKKNKKGEGEFFEAEKKEVNVLPQ 190
Query: 190 DKKDDQKTVDAQLIKSIEAVLDLKTYLSARFSLKSGMKPHELVF 233
+KKDDQK VD L+K+IE V +LK YL ARFSLK+GMKPHELVF
Sbjct: 191 EKKDDQKAVDVALLKAIEGVPELKAYLGARFSLKAGMKPHELVF 234
>sp|Q9C9C5|RL63_ARATH 60S ribosomal protein L6-3 OS=Arabidopsis thaliana GN=RPL6C PE=2
SV=1
Length = 233
Score = 325 bits (832), Expect = 2e-88, Method: Compositional matrix adjust.
Identities = 184/233 (78%), Positives = 198/233 (84%)
Query: 1 MAPKAATGRTSRNPDLIRGVGKFSRSKMYHKRGLWAIKAKNGGVFPKHDPKPAAAETPAK 60
M K T + +RNPDLIRGVGK+SRS+MYHKRGLWAIKAKNGGVFP+HD K K
Sbjct: 1 MPAKQRTPKVNRNPDLIRGVGKYSRSQMYHKRGLWAIKAKNGGVFPRHDAKSKVDAPVEK 60
Query: 61 PPKFYPADDVKKPLVNKRKHKPTKLRASITPGTVFILLAGRFMGKRVVFLKQLTSGLLLV 120
PPKFYPA+DVKKPL N+R KPTKLRASITPGTV I+LAGRF GKRVVFLKQL SGLLLV
Sbjct: 61 PPKFYPAEDVKKPLPNRRTAKPTKLRASITPGTVLIILAGRFKGKRVVFLKQLASGLLLV 120
Query: 121 TGPFKVNGVPLRRVNQSYVIATSTKVDISGVDLGKFDDQYFEKEAEKKKKKGEGEFFEAE 180
TGPFK+NGVPLRRVNQ+YVI TSTKVDISGV L KFDD+YF K AEKKKKK EGEFFEAE
Sbjct: 121 TGPFKINGVPLRRVNQAYVIGTSTKVDISGVTLDKFDDKYFGKVAEKKKKKTEGEFFEAE 180
Query: 181 KEEKKVLPDDKKDDQKTVDAQLIKSIEAVLDLKTYLSARFSLKSGMKPHELVF 233
KEEKK +P KKDDQK VDA LIK+IEAV +LKTYL ARFSLK GMKPHELVF
Sbjct: 181 KEEKKEIPQVKKDDQKAVDAALIKAIEAVPELKTYLGARFSLKQGMKPHELVF 233
>sp|Q9C9C6|RL62_ARATH 60S ribosomal protein L6-2 OS=Arabidopsis thaliana GN=RPL6B PE=2
SV=1
Length = 233
Score = 325 bits (832), Expect = 2e-88, Method: Compositional matrix adjust.
Identities = 183/233 (78%), Positives = 197/233 (84%)
Query: 1 MAPKAATGRTSRNPDLIRGVGKFSRSKMYHKRGLWAIKAKNGGVFPKHDPKPAAAETPAK 60
M K T + +RNPDLIRGVGK+SRS+MYHKRGLWAIKAKNGGVFP+HD K K
Sbjct: 1 MPAKQRTAKVNRNPDLIRGVGKYSRSQMYHKRGLWAIKAKNGGVFPRHDAKSKVDAPVEK 60
Query: 61 PPKFYPADDVKKPLVNKRKHKPTKLRASITPGTVFILLAGRFMGKRVVFLKQLTSGLLLV 120
PPKFYPA+DVKKPL N+R KP KLRASITPGTV I+LAGRF GKRVVFLKQL SGLLLV
Sbjct: 61 PPKFYPAEDVKKPLPNRRTAKPAKLRASITPGTVLIILAGRFKGKRVVFLKQLASGLLLV 120
Query: 121 TGPFKVNGVPLRRVNQSYVIATSTKVDISGVDLGKFDDQYFEKEAEKKKKKGEGEFFEAE 180
TGPFK+NGVPLRRVNQ+YVI TSTKVDISGV L KFDD+YF K AEKKKKK EGEFFEAE
Sbjct: 121 TGPFKINGVPLRRVNQAYVIGTSTKVDISGVTLDKFDDKYFGKVAEKKKKKTEGEFFEAE 180
Query: 181 KEEKKVLPDDKKDDQKTVDAQLIKSIEAVLDLKTYLSARFSLKSGMKPHELVF 233
KEEKK +P KKDDQK VDA LIK+IEAV +LKTYL ARFSLK GMKPHELVF
Sbjct: 181 KEEKKEIPQGKKDDQKAVDAALIKAIEAVPELKTYLGARFSLKQGMKPHELVF 233
>sp|Q9FZ76|RL61_ARATH 60S ribosomal protein L6-1 OS=Arabidopsis thaliana GN=RPL6A PE=2
SV=1
Length = 233
Score = 313 bits (801), Expect = 9e-85, Method: Compositional matrix adjust.
Identities = 179/227 (78%), Positives = 199/227 (87%)
Query: 7 TGRTSRNPDLIRGVGKFSRSKMYHKRGLWAIKAKNGGVFPKHDPKPAAAETPAKPPKFYP 66
T + +RNPDLIRGVGK+SRS+MYHKRGLWAIKAKNGGVFP+HD +P KP KFYP
Sbjct: 7 TPKVNRNPDLIRGVGKYSRSQMYHKRGLWAIKAKNGGVFPRHDAQPKVDAPVEKPAKFYP 66
Query: 67 ADDVKKPLVNKRKHKPTKLRASITPGTVFILLAGRFMGKRVVFLKQLTSGLLLVTGPFKV 126
A+DVKKPLVN+RK KPTKL+ASITPGTV I+LAGRF GKRVVFLKQL+SGLLLVTGPFK+
Sbjct: 67 AEDVKKPLVNRRKPKPTKLKASITPGTVLIILAGRFKGKRVVFLKQLSSGLLLVTGPFKI 126
Query: 127 NGVPLRRVNQSYVIATSTKVDISGVDLGKFDDQYFEKEAEKKKKKGEGEFFEAEKEEKKV 186
NGVPLRRVNQ+YVI TSTK+DISGV+ KFDD+YF K AEKKKKK EGEFFEAEKEEKK
Sbjct: 127 NGVPLRRVNQAYVIGTSTKIDISGVNTEKFDDKYFGKVAEKKKKKTEGEFFEAEKEEKKE 186
Query: 187 LPDDKKDDQKTVDAQLIKSIEAVLDLKTYLSARFSLKSGMKPHELVF 233
+P +KK+DQKTVDA LIKSIEAV +LK YL ARFSL GMKPHELVF
Sbjct: 187 IPQEKKEDQKTVDAALIKSIEAVPELKVYLGARFSLSQGMKPHELVF 233
>sp|Q2YGT9|RL6_PIG 60S ribosomal protein L6 OS=Sus scrofa GN=RPL6 PE=2 SV=3
Length = 284
Score = 198 bits (503), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 112/247 (45%), Positives = 157/247 (63%), Gaps = 25/247 (10%)
Query: 10 TSRNPDLIRGVGKFSRSKMYHKRGLWAIKAKNGGVFPKHDPKPAAAETPAKP-------- 61
SRNP L+RG+G++SRS MY ++ L+ K + K T KP
Sbjct: 40 CSRNPVLVRGIGRYSRSAMYSRKALYKRKYSAAKSKVEKKKKVRVLATVTKPVGGDKNGG 99
Query: 62 ---------PKFYPADDVKKPLVNKRKHKP-----TKLRASITPGTVFILLAGRFMGKRV 107
P++YP +DV + L++ K KP KLRASITPGT+ I+L GR GKRV
Sbjct: 100 TRVVKLRKMPRYYPTEDVPRKLLSHGK-KPFSKHVRKLRASITPGTILIILTGRHRGKRV 158
Query: 108 VFLKQLTSGLLLVTGPFKVNGVPLRRVNQSYVIATSTKVDISGVDLGK-FDDQYFEKEAE 166
+FLKQL+SGLLLVTGP +N VPLRR +Q +VIATSTK+DISGV + + D YF+K+
Sbjct: 159 IFLKQLSSGLLLVTGPLSLNRVPLRRTHQKFVIATSTKIDISGVKIPEHLTDAYFKKKKL 218
Query: 167 KKKKKGEGEFFEAEKEEKKVLPDDKKDDQKTVDAQLIKSIEAVLDLKTYLSARFSLKSGM 226
+K + EGE F+ EKE+ ++ + +K DQK VD+Q+++ I+AV L+ YL + F+L +G+
Sbjct: 219 RKPRHQEGEIFDTEKEKYEI-SEQRKVDQKAVDSQILRRIKAVPQLQGYLRSVFALTNGI 277
Query: 227 KPHELVF 233
PH+LVF
Sbjct: 278 YPHKLVF 284
>sp|Q6QMZ4|RL6_CHILA 60S ribosomal protein L6 OS=Chinchilla lanigera GN=RPL6 PE=2 SV=3
Length = 288
Score = 196 bits (499), Expect = 9e-50, Method: Compositional matrix adjust.
Identities = 114/247 (46%), Positives = 153/247 (61%), Gaps = 25/247 (10%)
Query: 10 TSRNPDLIRGVGKFSRSKMYHKRGLWAIKAKNGGVFPKHDPKPAAAETPAKP-------- 61
SRNP L+RG+G++SRS MY ++ L+ K + K T KP
Sbjct: 44 CSRNPVLVRGIGRYSRSAMYSRKALYKRKYTAAKSKVEKKKKEKVLATVTKPVGGDKNGG 103
Query: 62 ---------PKFYPADDVKKPLVNKRKHKP-----TKLRASITPGTVFILLAGRFMGKRV 107
P++YP +DV + L++ K KP KLRASITPGTV I+L GR GKRV
Sbjct: 104 TRVVKLRKMPRYYPTEDVPRKLLSHGK-KPFSQHVRKLRASITPGTVLIILTGRHRGKRV 162
Query: 108 VFLKQLTSGLLLVTGPFKVNGVPLRRVNQSYVIATSTKVDISGVDLGK-FDDQYFEKEAE 166
VFLKQL SGLLLVTGP +N VPLRR +Q +VIATSTK+DIS V + K D YF+K+
Sbjct: 163 VFLKQLASGLLLVTGPLNLNRVPLRRTHQKFVIATSTKIDISNVKIPKHLTDAYFKKKKL 222
Query: 167 KKKKKGEGEFFEAEKEEKKVLPDDKKDDQKTVDAQLIKSIEAVLDLKTYLSARFSLKSGM 226
+K + EGE F+ EKE ++ + +K DQK VD+Q++ I+AV L+ YL + F+L +G+
Sbjct: 223 RKPRHQEGEIFDTEKERYQI-SEQRKVDQKAVDSQILPKIKAVPQLRGYLRSVFALTNGI 281
Query: 227 KPHELVF 233
PH+LVF
Sbjct: 282 YPHKLVF 288
>sp|Q58DQ3|RL6_BOVIN 60S ribosomal protein L6 OS=Bos taurus GN=RPL6 PE=2 SV=3
Length = 287
Score = 195 bits (495), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 111/247 (44%), Positives = 156/247 (63%), Gaps = 25/247 (10%)
Query: 10 TSRNPDLIRGVGKFSRSKMYHKRGLWAIKAKNGGVFPKHDPKPAAAETPAKP-------- 61
SRNP L+RG+G++SRS MY ++ L+ K + K T KP
Sbjct: 43 CSRNPVLVRGIGRYSRSAMYSRKALYKRKYSAAKSKVEKKKKVRVLATVTKPVGGDKNGG 102
Query: 62 ---------PKFYPADDVKKPLVNKRKHKP-----TKLRASITPGTVFILLAGRFMGKRV 107
P++YP +DV + L++ K KP KLRASITPGT+ I+L GR GKRV
Sbjct: 103 TRVVKLRKMPRYYPTEDVPRKLLSHGK-KPFSKHVRKLRASITPGTILIILTGRHRGKRV 161
Query: 108 VFLKQLTSGLLLVTGPFKVNGVPLRRVNQSYVIATSTKVDISGVDLGK-FDDQYFEKEAE 166
VFLKQL SGLLLVTGP +N VPLRR +Q +VIATSTK+DISGV + + D YF+K+
Sbjct: 162 VFLKQLGSGLLLVTGPLSLNRVPLRRTHQKFVIATSTKIDISGVKIPEHLTDTYFKKKKL 221
Query: 167 KKKKKGEGEFFEAEKEEKKVLPDDKKDDQKTVDAQLIKSIEAVLDLKTYLSARFSLKSGM 226
+K + EGE F+ E+E+ ++ + +K DQK VD+Q+++ I+AV L+ YL + F+L +G+
Sbjct: 222 RKPRHQEGEIFDTEREKYEIT-EQRKVDQKAVDSQILRRIKAVPQLQGYLRSVFALTNGI 280
Query: 227 KPHELVF 233
PH++VF
Sbjct: 281 YPHKVVF 287
>sp|P21533|RL6_RAT 60S ribosomal protein L6 OS=Rattus norvegicus GN=Rpl6 PE=1 SV=5
Length = 298
Score = 193 bits (491), Expect = 7e-49, Method: Compositional matrix adjust.
Identities = 116/257 (45%), Positives = 155/257 (60%), Gaps = 44/257 (17%)
Query: 10 TSRNPDLIRGVGKFSRSKMYHKRGLWAIKA---------------------------KNG 42
SRNP L+RG+G++SRS MY ++ L+ K KNG
Sbjct: 53 CSRNPVLVRGIGRYSRSAMYSRKALYKRKYSAAKTKVEKKKKKEKVLATVTKTVGGDKNG 112
Query: 43 GVFPKHDPKPAAAETPAKPPKFYPADDVKKPLVNKRKHKP-----TKLRASITPGTVFIL 97
G K P++YP +DV + L++ K KP +LR+SITPGTV I+
Sbjct: 113 GT---------RVVKLRKMPRYYPTEDVPRKLLSHGK-KPFSQHVRRLRSSITPGTVLII 162
Query: 98 LAGRFMGKRVVFLKQLTSGLLLVTGPFKVNGVPLRRVNQSYVIATSTKVDISGVDLGK-F 156
L GR GKRVVFLKQL SGLLLVTGP +N VPLRR +Q +VIATSTKVDIS V + K
Sbjct: 163 LTGRHRGKRVVFLKQLGSGLLLVTGPLALNRVPLRRTHQKFVIATSTKVDISKVKIPKHL 222
Query: 157 DDQYFEKEAEKKKKKGEGEFFEAEKEEKKVLPDDKKDDQKTVDAQLIKSIEAVLDLKTYL 216
D YF+K+ +K + EGE F+ EKE+ ++ + +K DQK VD+Q++ I+AV L+ YL
Sbjct: 223 TDAYFKKKPLRKPRHQEGEIFDTEKEKYEIT-EQRKADQKAVDSQILPKIKAVPQLQGYL 281
Query: 217 SARFSLKSGMKPHELVF 233
++FSL +GM PH+LVF
Sbjct: 282 RSQFSLTNGMYPHKLVF 298
>sp|P47911|RL6_MOUSE 60S ribosomal protein L6 OS=Mus musculus GN=Rpl6 PE=1 SV=3
Length = 296
Score = 193 bits (491), Expect = 8e-49, Method: Compositional matrix adjust.
Identities = 116/257 (45%), Positives = 154/257 (59%), Gaps = 44/257 (17%)
Query: 10 TSRNPDLIRGVGKFSRSKMYHKRGLWAIKA---------------------------KNG 42
SRNP L+RG+G++SRS MY ++ L+ K KNG
Sbjct: 51 CSRNPVLVRGIGRYSRSAMYSRKALYKRKYSAAKTKVEKKKKKEKVLATVTKTVGGDKNG 110
Query: 43 GVFPKHDPKPAAAETPAKPPKFYPADDVKKPLVNKRKHKP-----TKLRASITPGTVFIL 97
G K P++YP +DV + L++ K KP +LR+SITPGTV I+
Sbjct: 111 G---------TRVVKLRKMPRYYPTEDVPRKLLSHGK-KPFSQHVRRLRSSITPGTVLII 160
Query: 98 LAGRFMGKRVVFLKQLTSGLLLVTGPFKVNGVPLRRVNQSYVIATSTKVDISGVDLGK-F 156
L GR GKRVVFLKQL SGLLLVTGP +N VPLRR +Q +VIATSTKVDIS V + K
Sbjct: 161 LTGRHRGKRVVFLKQLDSGLLLVTGPLVINRVPLRRTHQKFVIATSTKVDISDVKIPKHL 220
Query: 157 DDQYFEKEAEKKKKKGEGEFFEAEKEEKKVLPDDKKDDQKTVDAQLIKSIEAVLDLKTYL 216
D YF+K+ +K + EGE F+ EKE+ ++ + +K DQK VD Q++ I+AV L+ YL
Sbjct: 221 TDAYFKKKQLRKPRHQEGEIFDTEKEKYEIT-EQRKADQKAVDLQILPKIKAVPQLQGYL 279
Query: 217 SARFSLKSGMKPHELVF 233
++FSL +GM PH+LVF
Sbjct: 280 RSQFSLTNGMYPHKLVF 296
>sp|Q02878|RL6_HUMAN 60S ribosomal protein L6 OS=Homo sapiens GN=RPL6 PE=1 SV=3
Length = 288
Score = 193 bits (490), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 111/247 (44%), Positives = 154/247 (62%), Gaps = 25/247 (10%)
Query: 10 TSRNPDLIRGVGKFSRSKMYHKRGLWAIKAKNGGVFPKHDPKPAAAETPAKP-------- 61
SRNP L+RG+G++SRS MY ++ ++ K + K T KP
Sbjct: 44 CSRNPVLVRGIGRYSRSAMYSRKAMYKRKYSAAKSKVEKKKKEKVLATVTKPVGGDKNGG 103
Query: 62 ---------PKFYPADDVKKPLVNKRKHKP-----TKLRASITPGTVFILLAGRFMGKRV 107
P++YP +DV + L++ K KP KLRASITPGT+ I+L GR GKRV
Sbjct: 104 TRVVKLRKMPRYYPTEDVPRKLLSHGK-KPFSQHVRKLRASITPGTILIILTGRHRGKRV 162
Query: 108 VFLKQLTSGLLLVTGPFKVNGVPLRRVNQSYVIATSTKVDISGVDLGK-FDDQYFEKEAE 166
VFLKQL SGLLLVTGP +N VPLRR +Q +VIATSTK+DIS V + K D YF+K+
Sbjct: 163 VFLKQLASGLLLVTGPLVLNRVPLRRTHQKFVIATSTKIDISNVKIPKHLTDAYFKKKKL 222
Query: 167 KKKKKGEGEFFEAEKEEKKVLPDDKKDDQKTVDAQLIKSIEAVLDLKTYLSARFSLKSGM 226
+K + EGE F+ EKE+ ++ + +K DQK VD+Q++ I+A+ L+ YL + F+L +G+
Sbjct: 223 RKPRHQEGEIFDTEKEKYEIT-EQRKIDQKAVDSQILPKIKAIPQLQGYLRSVFALTNGI 281
Query: 227 KPHELVF 233
PH+LVF
Sbjct: 282 YPHKLVF 288
>sp|P0DJ56|RL6_TETTS 60S ribosomal protein L6 OS=Tetrahymena thermophila (strain SB210)
GN=RPL6 PE=1 SV=1
Length = 191
Score = 176 bits (445), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 91/179 (50%), Positives = 125/179 (69%), Gaps = 4/179 (2%)
Query: 59 AKPPKFYPADDVKKPLVNK--RKHKPTKLRASITPGTVFILLAGRFMGKRVVFLKQLTSG 116
+K K+Y ADD P + +K TKLR I PGTV ILLAGRF GKRVVFLKQL SG
Sbjct: 13 SKISKWYKADDEATPFHRRQLKKATATKLRNDIAPGTVLILLAGRFRGKRVVFLKQLKSG 72
Query: 117 LLLVTGPFKVNGVPLRRVNQSYVIATSTKVDISGVDLGKFDDQYFEKEAEKKKKKG--EG 174
LLLVTGP+KVNGVPL+RVNQ+Y ++TSTKVD++GV+ KF+D YF +E +K K +
Sbjct: 73 LLLVTGPYKVNGVPLKRVNQAYTLSTSTKVDLTGVNTAKFEDDYFGREKARKNHKNLFKA 132
Query: 175 EFFEAEKEEKKVLPDDKKDDQKTVDAQLIKSIEAVLDLKTYLSARFSLKSGMKPHELVF 233
E E +K+++ + +K DQ+ VD L+ +++ V LK YL+++F+L + +PHE+ F
Sbjct: 133 ELTEEQKKKETERKNARKQDQQAVDTPLLAAVKKVEFLKNYLASKFTLNNNDRPHEMKF 191
>sp|P05739|RL6B_YEAST 60S ribosomal protein L6-B OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=RPL6B PE=1 SV=4
Length = 176
Score = 171 bits (434), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 97/177 (54%), Positives = 122/177 (68%), Gaps = 2/177 (1%)
Query: 57 TPAKPPKFYPADDVKKPLVNKRKHKPTKLRASITPGTVFILLAGRFMGKRVVFLKQLTSG 116
T + PK+YP++DV P ++ +P KLRAS+ PGTV ILLAGRF GKRVV+LK L
Sbjct: 2 TAQQAPKWYPSEDVAAPKKTRKAVRPQKLRASLVPGTVLILLAGRFRGKRVVYLKHLEDN 61
Query: 117 LLLVTGPFKVNGVPLRRVNQSYVIATSTKVDISGVDLGKFDDQYFEKEAEKKKKKGEGEF 176
LLVTGPFKVNGVPLRRVN YVIATSTKV + GV++ KF+ +YF KE KK+K E
Sbjct: 62 TLLVTGPFKVNGVPLRRVNARYVIATSTKVSVEGVNVEKFNVEYFAKEKLTKKEKKEANL 121
Query: 177 FEAEKEEKKVLPDDKKDDQKTVDAQLIKSIEAVLDLKTYLSARFSLKSGMKPHELVF 233
F +++ K + ++ +DQK VD L+ I+ LK YLSA FSLK+G KPH L F
Sbjct: 122 F--PEQQTKEIKTERVEDQKVVDKALLAEIKKTPLLKQYLSASFSLKNGDKPHLLKF 176
>sp|Q02326|RL6A_YEAST 60S ribosomal protein L6-A OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=RPL6A PE=1 SV=2
Length = 176
Score = 168 bits (426), Expect = 3e-41, Method: Compositional matrix adjust.
Identities = 95/174 (54%), Positives = 120/174 (68%), Gaps = 2/174 (1%)
Query: 60 KPPKFYPADDVKKPLVNKRKHKPTKLRASITPGTVFILLAGRFMGKRVVFLKQLTSGLLL 119
K PK+YP++DV ++ +P KLRAS+ PGTV ILLAGRF GKRVV+LK L LL
Sbjct: 5 KAPKWYPSEDVAALKKTRKAARPQKLRASLVPGTVLILLAGRFRGKRVVYLKHLEDNTLL 64
Query: 120 VTGPFKVNGVPLRRVNQSYVIATSTKVDISGVDLGKFDDQYFEKEAEKKKKKGEGEFFEA 179
++GPFKVNGVPLRRVN YVIATSTKV + GV++ KF+ +YF KE KK+K E F
Sbjct: 65 ISGPFKVNGVPLRRVNARYVIATSTKVSVEGVNVEKFNVEYFAKEKLTKKEKKEANLF-- 122
Query: 180 EKEEKKVLPDDKKDDQKTVDAQLIKSIEAVLDLKTYLSARFSLKSGMKPHELVF 233
+++ K + ++ +DQK VD LI I+ LK YLSA FSLK+G KPH L F
Sbjct: 123 PEQQNKEIKAERVEDQKVVDKALIAEIKKTPLLKQYLSASFSLKNGDKPHMLKF 176
>sp|P79071|RL6_SCHPO 60S ribosomal protein L6 OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=rpl6 PE=1 SV=2
Length = 195
Score = 165 bits (417), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 99/199 (49%), Positives = 126/199 (63%), Gaps = 16/199 (8%)
Query: 39 AKNGG---VFPKHDPKPAAAETPAKPPKFYPADDVKKPLVNKRKHKPTKLRASITPGTVF 95
AKNGG V P A E AK +YPA P ++ +PTKLRAS+ PGTV
Sbjct: 9 AKNGGERMVLP-------AGEAAAK---YYPAYRENVPKKARKAVRPTKLRASLAPGTVC 58
Query: 96 ILLAGRFMGKRVVFLKQLTSGLLLVTGPFKVNGVPLRRVNQSYVIATST-KVDISGVDLG 154
ILLAGRF GKRVV L QL L+VTGP+KVNGVP+RRVN YVIATS K+D+SGV +
Sbjct: 59 ILLAGRFRGKRVVVLSQLED-TLVVTGPYKVNGVPIRRVNHRYVIATSAPKIDVSGVSVE 117
Query: 155 KFDDQYFEKEAEKKKKKGEGEFFEAEKEEKKVLPDDKKDDQKTVDAQLIKSIEAVLDLKT 214
KF YF K+ K + FF AE K LP ++ DQK VDA+L+ +I+A+ ++K
Sbjct: 118 KFTKAYFAKQKRSGPVKKDEAFF-AENAPKNALPAERIADQKAVDAKLLPAIKAIPNMKE 176
Query: 215 YLSARFSLKSGMKPHELVF 233
YL+A F+L +G +PH + F
Sbjct: 177 YLAASFALSNGDRPHLMKF 195
>sp|Q54D63|RL6_DICDI 60S ribosomal protein L6 OS=Dictyostelium discoideum GN=rpl6 PE=1
SV=1
Length = 236
Score = 147 bits (372), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 89/178 (50%), Positives = 115/178 (64%), Gaps = 4/178 (2%)
Query: 59 AKPPKFYPADDVK-KPLVNKRKHKPTKLRASITPGTVFILLAGRFMGKRVVFLKQLTSGL 117
AK KF P+ + + K+ + LR SITPGTV I+LAGRF GKRVV LKQL SGL
Sbjct: 60 AKASKFAPSIPAEIRSTAAKKVQQKVALRKSITPGTVLIILAGRFAGKRVVALKQLDSGL 119
Query: 118 LLVTGPFKVNGVPLRRVNQSYVIATSTKVDISGVDL-GKFDDQYFEKEAEKKKKKGEGEF 176
+L+TGPFKVNGVPLRR++Q YVIATSTK+D+S V + +D YF E +K K EG F
Sbjct: 120 ILITGPFKVNGVPLRRIDQRYVIATSTKIDVSSVKVAATINDAYFAAE-KKSTTKSEGAF 178
Query: 177 FEAEKEEKKVLPDDKK-DDQKTVDAQLIKSIEAVLDLKTYLSARFSLKSGMKPHELVF 233
F EK+ +K D + DQK+VD+ ++ ++ L YL +F LK G PH+L F
Sbjct: 179 FSDEKKAEKKKIADSRVADQKSVDSAILAVLKKEKFLTVYLKTKFYLKKGEFPHQLKF 236
>sp|P47991|RL6_CAEEL 60S ribosomal protein L6 OS=Caenorhabditis elegans GN=rpl-6 PE=1
SV=1
Length = 217
Score = 133 bits (335), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 95/229 (41%), Positives = 134/229 (58%), Gaps = 28/229 (12%)
Query: 11 SRNPDLIRGVGKFSRSKMYHKRGLWAIKAKNGGVFPKHDPKPA-AAETPAKPPKFYPADD 69
SRN DL GV +FS S++ K+G + KP +T AK PK +
Sbjct: 11 SRNFDLSPGVLRFSASRLRLKKG---------------EKKPKFTKDTSAKLPKLQ-RNG 54
Query: 70 VKKPLVNKRKHKPTKLRASITPGTVFILLAGRFMGKRVVFLKQL-TSGLLLVTGPFKVNG 128
K L + K LR ++TPGTV I+LAGR GKRVVFLKQL SGLLLVTGP K+NG
Sbjct: 55 TKFALGHS---KTVTLRKTLTPGTVLIVLAGRHKGKRVVFLKQLPQSGLLLVTGPHKING 111
Query: 129 VPLRRVNQSYVIATSTKVDISGVDLGK-FDDQYFEKEAEKKKKKGEGEFFEAEKEEKKVL 187
PLRR+ Q++VIATS KV++SGV + + +D+YF++++ +K G+ A + + +
Sbjct: 112 FPLRRIGQAFVIATSLKVNVSGVKIPEHINDEYFKRKSTAQK---TGKNIFASGKTEYTV 168
Query: 188 PDDKKDDQKTVDAQLIKSIEAVLDLK---TYLSARFSLKSGMKPHELVF 233
+ +K D KTVDA ++ +I+ + K YL RFSL PH++ F
Sbjct: 169 SEQRKKDIKTVDAPILAAIKKHPEHKFLFGYLGTRFSLGKNQYPHKMQF 217
>sp|Q4JAJ9|RL14E_SULAC 50S ribosomal protein L14e OS=Sulfolobus acidocaldarius (strain
ATCC 33909 / DSM 639 / JCM 8929 / NBRC 15157 / NCIMB
11770) GN=rpl14e PE=3 SV=1
Length = 96
Score = 46.2 bits (108), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 37/62 (59%)
Query: 88 SITPGTVFILLAGRFMGKRVVFLKQLTSGLLLVTGPFKVNGVPLRRVNQSYVIATSTKVD 147
+I G + + GR GK+ V + + S +LVTGP ++NGV RRVN ++ T KV+
Sbjct: 3 AIEIGRICVKTRGREAGKKCVIVDIIDSNFVLVTGPKEINGVKRRRVNILHIEPTDKKVE 62
Query: 148 IS 149
I+
Sbjct: 63 IN 64
>sp|A8ABY5|RL14E_IGNH4 50S ribosomal protein L14e OS=Ignicoccus hospitalis (strain KIN4/I
/ DSM 18386 / JCM 14125) GN=rpl14e PE=3 SV=1
Length = 103
Score = 45.8 bits (107), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 37/62 (59%)
Query: 88 SITPGTVFILLAGRFMGKRVVFLKQLTSGLLLVTGPFKVNGVPLRRVNQSYVIATSTKVD 147
+I G V +++AGR GK+ V + + +LVTGP ++NGV RR+N ++ KV+
Sbjct: 3 AIEVGRVCVIIAGRRAGKKCVIVDLIDDKFVLVTGPKELNGVKRRRMNIKHLEPLDKKVE 62
Query: 148 IS 149
I
Sbjct: 63 IE 64
>sp|Q975L7|RL14E_SULTO 50S ribosomal protein L14e OS=Sulfolobus tokodaii (strain DSM 16993
/ JCM 10545 / NBRC 100140 / 7) GN=rpl14e PE=3 SV=1
Length = 96
Score = 43.9 bits (102), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 41/79 (51%), Gaps = 3/79 (3%)
Query: 88 SITPGTVFILLAGRFMGKRVVFLKQLTSGLLLVTGPFKVNGVPLRRVNQSYVIATSTKVD 147
+I G + + GR GK+ V + + +LVTGP VN V RRVN ++ T K+D
Sbjct: 3 AIEIGRICVKTRGREAGKKCVIVDIIDENFVLVTGPKDVNKVKRRRVNILHLEPTDKKID 62
Query: 148 ISGVDLGKFDDQYFEKEAE 166
I+ G DD+ +K E
Sbjct: 63 INK---GASDDEVKKKLEE 78
>sp|Q980C1|RL14E_SULSO 50S ribosomal protein L14e OS=Sulfolobus solfataricus (strain ATCC
35092 / DSM 1617 / JCM 11322 / P2) GN=rpl14e PE=1 SV=1
Length = 96
Score = 43.1 bits (100), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 46/99 (46%), Gaps = 10/99 (10%)
Query: 88 SITPGTVFILLAGRFMGKRVVFLKQLTSGLLLVTGPFKVNGVPLRRVNQSYVIATSTKVD 147
+I G + + + GR G + V + + +LVTGP + GV RRVN ++ T K+D
Sbjct: 3 AIEVGRICVKVKGREAGSKCVIVDIIDDNFVLVTGPKDITGVKRRRVNILHLEPTDKKID 62
Query: 148 ISGVDLGKFDDQYFEKEAEKKKKKGEGEFFEAEKEEKKV 186
I Q + E KKK E E KE+ K+
Sbjct: 63 I----------QKGASDEEVKKKLEESNLTEYMKEKIKI 91
>sp|A4YCT0|RL14E_METS5 50S ribosomal protein L14e OS=Metallosphaera sedula (strain ATCC
51363 / DSM 5348) GN=rpl14e PE=3 SV=1
Length = 96
Score = 43.1 bits (100), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 36/62 (58%)
Query: 87 ASITPGTVFILLAGRFMGKRVVFLKQLTSGLLLVTGPFKVNGVPLRRVNQSYVIATSTKV 146
A I G + + L+GR G + V + + + +LVTGP ++GV RRVN S++ T V
Sbjct: 2 AIIEVGRICVKLSGREAGSKCVIVDIIDNNFVLVTGPKSISGVKRRRVNISHLEPTDKTV 61
Query: 147 DI 148
+I
Sbjct: 62 EI 63
>sp|Q8TX43|RL14E_METKA 50S ribosomal protein L14e OS=Methanopyrus kandleri (strain AV19 /
DSM 6324 / JCM 9639 / NBRC 100938) GN=rpl14e PE=3 SV=1
Length = 94
Score = 42.7 bits (99), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 38/76 (50%), Gaps = 3/76 (3%)
Query: 87 ASITPGTVFILLAGRFMGKRVVFLKQLTSGLLLVTGPFKVNGVPLRRVNQSYVIATSTKV 146
A I G + + AGR GK V + + +++TGP V GV RR N ++ T KV
Sbjct: 3 APIEVGRICVKTAGREAGKYCVVVDIVDENFVIITGPKDVTGVKRRRCNIKHLEPTPEKV 62
Query: 147 DISGVDLGKFDDQYFE 162
DI D G D++ E
Sbjct: 63 DI---DRGASDEEVKE 75
>sp|O15595|RL6_ENTHI 60S ribosomal protein L6 (Fragment) OS=Entamoeba histolytica
GN=RPL6 PE=3 SV=1
Length = 92
Score = 42.4 bits (98), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 43/79 (54%), Gaps = 16/79 (20%)
Query: 59 AKPPKFYPADDV----KKPLVNKRKHKPT----------KLRASITPGTVFILLAGRFMG 104
AK P +YP DD+ KK L ++ K T KLR SI PG + I++ G++ G
Sbjct: 14 AKVPAYYPTDDMIQEQKKKLRTRKGAKITALDKPGWNLEKLRKSIVPGAILIIVGGKYAG 73
Query: 105 KRVVFL--KQLTSGLLLVT 121
K+VV L + ++S L+ T
Sbjct: 74 KKVVSLPSQGVSSAPLIAT 92
>sp|C3MXC5|RL14E_SULIM 50S ribosomal protein L14e OS=Sulfolobus islandicus (strain M.14.25
/ Kamchatka #1) GN=rpl14e PE=3 SV=1
Length = 96
Score = 42.0 bits (97), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 34/62 (54%)
Query: 88 SITPGTVFILLAGRFMGKRVVFLKQLTSGLLLVTGPFKVNGVPLRRVNQSYVIATSTKVD 147
+I G + + + GR G + V + + +LVTGP ++GV RRVN ++ T K+D
Sbjct: 3 AIEVGRICVKVKGREAGSKCVIVDIIDDNFVLVTGPKDISGVKRRRVNILHLEPTDKKID 62
Query: 148 IS 149
I
Sbjct: 63 IQ 64
>sp|C3N789|RL14E_SULIY 50S ribosomal protein L14e OS=Sulfolobus islandicus (strain
Y.G.57.14 / Yellowstone #1) GN=rpl14e PE=3 SV=1
Length = 96
Score = 41.6 bits (96), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 34/62 (54%)
Query: 88 SITPGTVFILLAGRFMGKRVVFLKQLTSGLLLVTGPFKVNGVPLRRVNQSYVIATSTKVD 147
+I G + + + GR G + V + + +LVTGP ++GV RRVN ++ T K+D
Sbjct: 3 AIEVGRICVKVKGREAGSKCVIVDIIDDNFVLVTGPKDISGVKRRRVNILHLEPTDKKID 62
Query: 148 IS 149
I
Sbjct: 63 IQ 64
>sp|C3NGE6|RL14E_SULIN 50S ribosomal protein L14e OS=Sulfolobus islandicus (strain
Y.N.15.51 / Yellowstone #2) GN=rpl14e PE=3 SV=1
Length = 96
Score = 41.6 bits (96), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 34/62 (54%)
Query: 88 SITPGTVFILLAGRFMGKRVVFLKQLTSGLLLVTGPFKVNGVPLRRVNQSYVIATSTKVD 147
+I G + + + GR G + V + + +LVTGP ++GV RRVN ++ T K+D
Sbjct: 3 AIEVGRICVKVKGREAGSKCVIVDIIDDNFVLVTGPKDISGVKRRRVNILHLEPTDKKID 62
Query: 148 IS 149
I
Sbjct: 63 IQ 64
>sp|C3MR21|RL14E_SULIL 50S ribosomal protein L14e OS=Sulfolobus islandicus (strain
L.S.2.15 / Lassen #1) GN=rpl14e PE=3 SV=1
Length = 96
Score = 41.6 bits (96), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 34/62 (54%)
Query: 88 SITPGTVFILLAGRFMGKRVVFLKQLTSGLLLVTGPFKVNGVPLRRVNQSYVIATSTKVD 147
+I G + + + GR G + V + + +LVTGP ++GV RRVN ++ T K+D
Sbjct: 3 AIEVGRICVKVKGREAGSKCVIVDIIDDNFVLVTGPKDISGVKRRRVNILHLEPTDKKID 62
Query: 148 IS 149
I
Sbjct: 63 IQ 64
>sp|C4KIE7|RL14E_SULIK 50S ribosomal protein L14e OS=Sulfolobus islandicus (strain M.16.4
/ Kamchatka #3) GN=rpl14e PE=3 SV=1
Length = 96
Score = 41.6 bits (96), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 34/62 (54%)
Query: 88 SITPGTVFILLAGRFMGKRVVFLKQLTSGLLLVTGPFKVNGVPLRRVNQSYVIATSTKVD 147
+I G + + + GR G + V + + +LVTGP ++GV RRVN ++ T K+D
Sbjct: 3 AIEVGRICVKVKGREAGSKCVIVDIIDDNFVLVTGPKDISGVKRRRVNILHLEPTDKKID 62
Query: 148 IS 149
I
Sbjct: 63 IQ 64
>sp|C3MZ69|RL14E_SULIA 50S ribosomal protein L14e OS=Sulfolobus islandicus (strain
M.16.27) GN=rpl14e PE=3 SV=1
Length = 96
Score = 41.6 bits (96), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 34/62 (54%)
Query: 88 SITPGTVFILLAGRFMGKRVVFLKQLTSGLLLVTGPFKVNGVPLRRVNQSYVIATSTKVD 147
+I G + + + GR G + V + + +LVTGP ++GV RRVN ++ T K+D
Sbjct: 3 AIEVGRICVKVKGREAGSKCVIVDIIDDNFVLVTGPKDISGVKRRRVNILHLEPTDKKID 62
Query: 148 IS 149
I
Sbjct: 63 IQ 64
>sp|Q8ZYB4|RL14E_PYRAE 50S ribosomal protein L14e OS=Pyrobaculum aerophilum (strain ATCC
51768 / IM2 / DSM 7523 / JCM 9630 / NBRC 100827)
GN=rpl14e PE=3 SV=1
Length = 103
Score = 39.7 bits (91), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 38/71 (53%), Gaps = 3/71 (4%)
Query: 89 ITPGTVFILLAGRFMGKRVVFLKQLTSGLLLVTGPFKVNGVPLRRVNQSYVIATSTKVDI 148
I G V + + GR G++ V + + +++TGP + GV RRVN +++ T K+DI
Sbjct: 5 IDIGRVVVKVLGREAGRKAVVVDIVDENYVVITGPKPITGVKRRRVNINHIEPTDKKIDI 64
Query: 149 SGVDLGKFDDQ 159
G DD+
Sbjct: 65 K---RGASDDE 72
>sp|A1RTL6|RL14E_PYRIL 50S ribosomal protein L14e OS=Pyrobaculum islandicum (strain DSM
4184 / JCM 9189) GN=rpl14e PE=3 SV=1
Length = 103
Score = 39.7 bits (91), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 35/60 (58%)
Query: 89 ITPGTVFILLAGRFMGKRVVFLKQLTSGLLLVTGPFKVNGVPLRRVNQSYVIATSTKVDI 148
I G V + + GR G++ V + + +++TGP ++ GV RRVN +++ T K+DI
Sbjct: 5 IDIGRVVVKVLGREAGRKAVVVDIVDENYVVITGPKQLTGVRRRRVNINHIEPTDKKIDI 64
>sp|A4WH36|RL14E_PYRAR 50S ribosomal protein L14e OS=Pyrobaculum arsenaticum (strain DSM
13514 / JCM 11321) GN=rpl14e PE=3 SV=1
Length = 103
Score = 38.9 bits (89), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 34/60 (56%)
Query: 89 ITPGTVFILLAGRFMGKRVVFLKQLTSGLLLVTGPFKVNGVPLRRVNQSYVIATSTKVDI 148
I G V + + GR G++ V + + +L+TGP + GV RRVN +++ T KV+I
Sbjct: 5 IDIGRVVVKVLGREAGRKAVVVDVVDENYVLITGPKTLTGVKRRRVNINHIEPTDKKVEI 64
>sp|A3DND4|RL14E_STAMF 50S ribosomal protein L14e OS=Staphylothermus marinus (strain ATCC
43588 / DSM 3639 / F1) GN=rpl14e PE=3 SV=1
Length = 96
Score = 38.1 bits (87), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 33/62 (53%)
Query: 88 SITPGTVFILLAGRFMGKRVVFLKQLTSGLLLVTGPFKVNGVPLRRVNQSYVIATSTKVD 147
+I G + + +AGR G++ V + + +L+TGP + GV RR N ++ +D
Sbjct: 3 AIEIGRICVKVAGREAGRKCVIVDIIDENFVLITGPKSLTGVKRRRANVKHIEPLDKVID 62
Query: 148 IS 149
IS
Sbjct: 63 IS 64
>sp|Q9YDD7|RL14E_AERPE 50S ribosomal protein L14e OS=Aeropyrum pernix (strain ATCC 700893
/ DSM 11879 / JCM 9820 / NBRC 100138 / K1) GN=rpl14e
PE=3 SV=2
Length = 100
Score = 38.1 bits (87), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 31/61 (50%)
Query: 89 ITPGTVFILLAGRFMGKRVVFLKQLTSGLLLVTGPFKVNGVPLRRVNQSYVIATSTKVDI 148
+ G + + GR G++ V + + +LVTGP + GV RRVN ++ KVDI
Sbjct: 5 VEVGRICVKTRGREAGRKCVIVDIIDENFVLVTGPKSLTGVRRRRVNIDHIEILDKKVDI 64
Query: 149 S 149
Sbjct: 65 Q 65
>sp|A3MS76|RL14E_PYRCJ 50S ribosomal protein L14e OS=Pyrobaculum calidifontis (strain JCM
11548 / VA1) GN=rpl14e PE=3 SV=1
Length = 103
Score = 37.7 bits (86), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 35/60 (58%)
Query: 89 ITPGTVFILLAGRFMGKRVVFLKQLTSGLLLVTGPFKVNGVPLRRVNQSYVIATSTKVDI 148
I G V + + GR G++ V + + +++TGP ++GV RRVN +++ T K++I
Sbjct: 5 IDVGRVVVKVLGREAGRKAVVVDIVDENYVVITGPKSLSGVRRRRVNINHIEPTDKKIEI 64
>sp|B1YA63|RL14E_PYRNV 50S ribosomal protein L14e OS=Pyrobaculum neutrophilum (strain DSM
2338 / JCM 9278 / V24Sta) GN=rpl14e PE=3 SV=1
Length = 103
Score = 37.7 bits (86), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 35/60 (58%)
Query: 89 ITPGTVFILLAGRFMGKRVVFLKQLTSGLLLVTGPFKVNGVPLRRVNQSYVIATSTKVDI 148
I G V + + GR G++ V + + +++TGP ++ GV RRVN +++ T KV++
Sbjct: 5 IDVGRVVVKVLGREAGRKAVVVDIVDENYVVITGPKQLTGVRRRRVNVNHIEPTDKKVEV 64
>sp|A2BME7|RL14E_HYPBU 50S ribosomal protein L14e OS=Hyperthermus butylicus (strain DSM
5456 / JCM 9403) GN=rpl14e PE=3 SV=1
Length = 98
Score = 37.4 bits (85), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 34/62 (54%)
Query: 88 SITPGTVFILLAGRFMGKRVVFLKQLTSGLLLVTGPFKVNGVPLRRVNQSYVIATSTKVD 147
+I G + + GR G++ V ++ + +L+TGP V+GV RR N +++ K++
Sbjct: 3 AIEVGRLCVKTRGREAGRKCVIVEIIDDNFVLITGPKDVSGVKRRRANINHIEVLPEKIN 62
Query: 148 IS 149
I
Sbjct: 63 IQ 64
>sp|B8D5U3|RL14E_DESK1 50S ribosomal protein L14e OS=Desulfurococcus kamchatkensis (strain
1221n / DSM 18924) GN=rpl14e PE=3 SV=1
Length = 96
Score = 35.4 bits (80), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 32/61 (52%)
Query: 88 SITPGTVFILLAGRFMGKRVVFLKQLTSGLLLVTGPFKVNGVPLRRVNQSYVIATSTKVD 147
+I G + + AGR G++ + + + +LVTGP + GV R+VN ++ T +
Sbjct: 3 AIEIGRICVKTAGREAGRKCIIVDIIDDNFVLVTGPKSLTGVKRRKVNIKHLEPTDKSIK 62
Query: 148 I 148
I
Sbjct: 63 I 63
>sp|A1RXE1|RL14E_THEPD 50S ribosomal protein L14e OS=Thermofilum pendens (strain Hrk 5)
GN=rpl14e PE=3 SV=1
Length = 98
Score = 34.3 bits (77), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 19/58 (32%), Positives = 30/58 (51%)
Query: 92 GTVFILLAGRFMGKRVVFLKQLTSGLLLVTGPFKVNGVPLRRVNQSYVIATSTKVDIS 149
G + + +GR G + V + + +LVTGP V+GV RR N ++ K+ IS
Sbjct: 7 GRICVKTSGREAGLKCVIVDIIDDNFVLVTGPKSVSGVKRRRANIRHLEPLEYKISIS 64
>sp|Q8U2L5|RL14E_PYRFU 50S ribosomal protein L14e OS=Pyrococcus furiosus (strain ATCC
43587 / DSM 3638 / JCM 8422 / Vc1) GN=rpl14e PE=1 SV=1
Length = 83
Score = 33.9 bits (76), Expect = 0.94, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 35/61 (57%), Gaps = 1/61 (1%)
Query: 88 SITPGTVFILLAGRFMGKRVVFLKQLTSGLLLVTGPFKVNGVPLRRVNQSYVIATSTKVD 147
+I G + +++AGR G++VV + + +LVTG +N V RR+N ++ K+D
Sbjct: 3 AIDVGRIAVVIAGRRAGQKVVVVDIIDKNFVLVTGA-GLNKVKRRRMNIKHIEPLPQKID 61
Query: 148 I 148
I
Sbjct: 62 I 62
>sp|P59937|RL14E_PYRHO 50S ribosomal protein L14e OS=Pyrococcus horikoshii (strain ATCC
700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3)
GN=rpl14e PE=3 SV=1
Length = 82
Score = 32.7 bits (73), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 34/61 (55%), Gaps = 1/61 (1%)
Query: 88 SITPGTVFILLAGRFMGKRVVFLKQLTSGLLLVTGPFKVNGVPLRRVNQSYVIATSTKVD 147
+I G + +++AGR G++ V + + +LVTG +N V RR+N ++ K+D
Sbjct: 3 AIDVGRIAVIIAGRRAGQKCVIVDIIDKNFVLVTGA-GLNKVKRRRMNIKHLEPLPEKID 61
Query: 148 I 148
I
Sbjct: 62 I 62
>sp|Q9UZJ5|RL14E_PYRAB 50S ribosomal protein L14e OS=Pyrococcus abyssi (strain GE5 /
Orsay) GN=rpl14e PE=3 SV=1
Length = 82
Score = 32.7 bits (73), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 34/61 (55%), Gaps = 1/61 (1%)
Query: 88 SITPGTVFILLAGRFMGKRVVFLKQLTSGLLLVTGPFKVNGVPLRRVNQSYVIATSTKVD 147
+I G + +++AGR G++ V + + +LVTG +N V RR+N ++ K+D
Sbjct: 3 AIDVGRIAVIIAGRRAGQKCVIVDIIDKNFVLVTGA-GLNKVKRRRMNIKHLEPLPEKID 61
Query: 148 I 148
I
Sbjct: 62 I 62
>sp|Q39B28|HMUV_BURS3 Hemin import ATP-binding protein HmuV OS=Burkholderia sp. (strain
383) GN=hmuV PE=3 SV=1
Length = 273
Score = 32.3 bits (72), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 34/69 (49%), Gaps = 8/69 (11%)
Query: 75 VNKRKHKPTK-LRASITPGTVFILLAGRFMGKRVV---FLKQLTSGL----LLVTGPFKV 126
V +R H + L SI PG V LL GK + F +LT G+ + VTG +
Sbjct: 9 VARRHHAILRNLSLSIEPGRVTALLGRNGAGKSTLLKTFAGELTGGVAPNGVRVTGDITL 68
Query: 127 NGVPLRRVN 135
NG PL R++
Sbjct: 69 NGEPLARID 77
>sp|Q6IFX2|K1C42_MOUSE Keratin, type I cytoskeletal 42 OS=Mus musculus GN=Krt42 PE=1 SV=1
Length = 452
Score = 32.3 bits (72), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 50/88 (56%), Gaps = 5/88 (5%)
Query: 146 VDISGVDLGKFDDQYFEKEAEKKKKKGEGEFFEAEKEEKKVLPDDKKDDQ--KTVDAQLI 203
VD+S + L + DQY EK AEK +K E FF +E + + + + Q +T +L
Sbjct: 257 VDLSRI-LNEMRDQY-EKMAEKNRKDAEEWFFTKTEELNREVATNTEALQSSRTEITELR 314
Query: 204 KSIEAV-LDLKTYLSARFSLKSGMKPHE 230
+S++ + ++L++ LS + SL++ + E
Sbjct: 315 RSVQNLEIELQSQLSMKASLENSLAETE 342
>sp|Q6IFU7|K1C42_RAT Keratin, type I cytoskeletal 42 OS=Rattus norvegicus GN=Krt42 PE=2
SV=1
Length = 452
Score = 32.3 bits (72), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 50/88 (56%), Gaps = 5/88 (5%)
Query: 146 VDISGVDLGKFDDQYFEKEAEKKKKKGEGEFFEAEKEEKKVLPDDKKDDQ--KTVDAQLI 203
VD+S + L + DQY EK AEK +K E FF +E + + + + Q +T +L
Sbjct: 257 VDLSRI-LNEMRDQY-EKMAEKNRKDAEEWFFTKTEELNREVATNTEALQSSRTEITELR 314
Query: 204 KSIEAV-LDLKTYLSARFSLKSGMKPHE 230
+S++ + ++L++ LS + SL++ + E
Sbjct: 315 RSVQNLEIELQSQLSMKASLENSLAETE 342
>sp|Q9QWL7|K1C17_MOUSE Keratin, type I cytoskeletal 17 OS=Mus musculus GN=Krt17 PE=1 SV=3
Length = 433
Score = 31.2 bits (69), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 51/88 (57%), Gaps = 5/88 (5%)
Query: 146 VDISGVDLGKFDDQYFEKEAEKKKKKGEGEFFEAEKEEKKVLPDDKKDDQ--KTVDAQLI 203
VD+S + L + DQY EK AEK +K E FF +E + + + + Q K+ ++L
Sbjct: 247 VDLSRI-LSEMRDQY-EKMAEKNRKDAEDWFFSKTEELNREVATNSELVQSGKSEISELR 304
Query: 204 KSIEAV-LDLKTYLSARFSLKSGMKPHE 230
++++A+ ++L++ LS + SL+ + E
Sbjct: 305 RTMQALEIELQSQLSMKASLEGSLAETE 332
>sp|A1L595|K1C17_BOVIN Keratin, type I cytoskeletal 17 OS=Bos taurus GN=KRT17 PE=2 SV=1
Length = 441
Score = 31.2 bits (69), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 51/88 (57%), Gaps = 5/88 (5%)
Query: 146 VDISGVDLGKFDDQYFEKEAEKKKKKGEGEFFEAEKEEKKVLPDDKKDDQ--KTVDAQLI 203
VD+S + L + DQY EK AEK +K E FF +E + + + + Q K+ ++L
Sbjct: 255 VDLSRI-LNEMRDQY-EKMAEKNRKDAEDWFFSKTEELNREVATNSELVQSGKSEISELR 312
Query: 204 KSIEAV-LDLKTYLSARFSLKSGMKPHE 230
++++A+ ++L++ LS + SL+ + E
Sbjct: 313 RTLQALEIELQSQLSMKASLEGSLAETE 340
>sp|Q04695|K1C17_HUMAN Keratin, type I cytoskeletal 17 OS=Homo sapiens GN=KRT17 PE=1 SV=2
Length = 432
Score = 31.2 bits (69), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 51/88 (57%), Gaps = 5/88 (5%)
Query: 146 VDISGVDLGKFDDQYFEKEAEKKKKKGEGEFFEAEKEEKKVLPDDKKDDQ--KTVDAQLI 203
VD+S + L + DQY EK AEK +K E FF +E + + + + Q K+ ++L
Sbjct: 247 VDLSRI-LNEMRDQY-EKMAEKNRKDAEDWFFSKTEELNREVATNSELVQSGKSEISELR 304
Query: 204 KSIEAV-LDLKTYLSARFSLKSGMKPHE 230
++++A+ ++L++ LS + SL+ + E
Sbjct: 305 RTMQALEIELQSQLSMKASLEGNLAETE 332
>sp|Q6IFU8|K1C17_RAT Keratin, type I cytoskeletal 17 OS=Rattus norvegicus GN=Krt17 PE=2
SV=1
Length = 433
Score = 31.2 bits (69), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 51/88 (57%), Gaps = 5/88 (5%)
Query: 146 VDISGVDLGKFDDQYFEKEAEKKKKKGEGEFFEAEKEEKKVLPDDKKDDQ--KTVDAQLI 203
VD+S + L + DQY EK AEK +K E FF +E + + + + Q K+ ++L
Sbjct: 247 VDLSRI-LSEMRDQY-EKMAEKNRKDAEDWFFSKTEELNREVATNSELVQSGKSEISELR 304
Query: 204 KSIEAV-LDLKTYLSARFSLKSGMKPHE 230
++++A+ ++L++ LS + SL+ + E
Sbjct: 305 RTMQALEIELQSQLSMKASLEGSLAETE 332
>sp|C5A257|RL14E_THEGJ 50S ribosomal protein L14e OS=Thermococcus gammatolerans (strain
DSM 15229 / JCM 11827 / EJ3) GN=rpl14e PE=3 SV=1
Length = 83
Score = 30.8 bits (68), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 34/61 (55%), Gaps = 1/61 (1%)
Query: 88 SITPGTVFILLAGRFMGKRVVFLKQLTSGLLLVTGPFKVNGVPLRRVNQSYVIATSTKVD 147
+I G + +++AGR G++VV + +LVTG +N V RR+N ++ +V+
Sbjct: 3 AIEVGRIAVVIAGRRAGQKVVVADIIDKNFVLVTGA-GLNKVKRRRMNVKHLEPLPERVN 61
Query: 148 I 148
I
Sbjct: 62 I 62
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.316 0.135 0.386
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 91,461,471
Number of Sequences: 539616
Number of extensions: 4138466
Number of successful extensions: 22971
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 68
Number of HSP's successfully gapped in prelim test: 93
Number of HSP's that attempted gapping in prelim test: 22232
Number of HSP's gapped (non-prelim): 677
length of query: 233
length of database: 191,569,459
effective HSP length: 114
effective length of query: 119
effective length of database: 130,053,235
effective search space: 15476334965
effective search space used: 15476334965
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 59 (27.3 bits)