Query 026764
Match_columns 233
No_of_seqs 170 out of 400
Neff 4.3
Searched_HMMs 29240
Date Mon Mar 25 21:35:30 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026764.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/026764hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3iz5_G 60S ribosomal protein L 100.0 5.8E-91 2E-95 608.4 -9.9 214 15-233 6-219 (219)
2 3izc_G 60S ribosomal protein R 100.0 2.9E-82 9.8E-87 538.6 0.8 176 56-233 1-176 (176)
3 4a18_E RPL6; ribosome, eukaryo 100.0 1.6E-74 5.5E-79 496.2 9.7 173 58-233 12-191 (191)
4 2joy_A 50S ribosomal protein L 99.8 1.4E-19 4.6E-24 140.4 6.1 74 88-165 3-76 (96)
5 4a18_N RPL27, ribosomal protei 99.4 8.6E-14 2.9E-18 115.2 4.9 73 88-162 4-103 (144)
6 3j21_5 50S ribosomal protein L 99.2 2.7E-11 9.1E-16 91.9 5.0 61 88-149 3-63 (83)
7 3izc_N 60S ribosomal protein R 99.0 4.9E-10 1.7E-14 92.2 5.5 61 87-149 13-73 (138)
8 3izc_a 60S ribosomal protein R 98.9 4.1E-12 1.4E-16 104.3 -9.0 63 88-150 4-91 (136)
9 3iz5_a 60S ribosomal protein L 98.8 3.3E-11 1.1E-15 98.9 -7.2 62 88-149 4-90 (136)
10 3iz5_N 60S ribosomal protein L 98.5 6E-08 2.1E-12 79.5 4.8 58 88-149 6-63 (134)
11 4a18_F RPL14; ribosome, eukary 98.2 1.1E-06 3.7E-11 71.4 5.4 58 88-149 6-64 (126)
12 2zjr_R 50S ribosomal protein L 95.3 0.013 4.3E-07 46.6 3.6 67 82-153 11-83 (115)
13 3r8s_U 50S ribosomal protein L 94.4 0.059 2E-06 42.0 5.2 62 89-153 4-71 (102)
14 2zkr_t 60S ribosomal protein L 94.0 0.036 1.2E-06 45.8 3.5 64 88-160 48-115 (145)
15 3j21_U 50S ribosomal protein L 93.8 0.049 1.7E-06 43.7 3.7 62 88-158 45-109 (121)
16 1vq8_T 50S ribosomal protein L 93.6 0.062 2.1E-06 43.0 4.1 57 88-153 42-99 (120)
17 3v2d_Y 50S ribosomal protein L 93.6 0.056 1.9E-06 42.6 3.8 63 88-153 6-74 (110)
18 3u5e_Y L33, YL33, 60S ribosoma 92.6 0.18 6.2E-06 40.8 5.4 62 89-159 50-114 (127)
19 2ftc_N Mitochondrial ribosomal 92.2 0.11 3.8E-06 40.0 3.6 58 92-153 1-64 (96)
20 4a17_S RPL26, 60S ribosomal pr 91.2 0.19 6.4E-06 41.1 4.0 61 89-158 49-112 (135)
21 3iz5_Y 60S ribosomal protein L 90.6 0.24 8.3E-06 41.1 4.3 61 89-158 49-112 (150)
22 3bbo_W Ribosomal protein L24; 86.4 0.067 2.3E-06 46.0 -1.9 63 88-153 68-136 (191)
23 2do3_A Transcription elongatio 79.3 2.9 0.0001 30.4 4.7 34 82-115 11-44 (69)
24 3q90_A RAS GTPase-activating p 52.7 5.5 0.00019 31.4 1.6 27 117-143 92-118 (140)
25 3ujm_A Rasputin; NTF2-like fol 52.2 8.4 0.00029 29.5 2.6 27 117-143 79-105 (120)
26 3nv0_B NTF2-related export pro 37.6 20 0.00069 28.9 2.8 26 117-142 113-138 (154)
27 1zo2_A NTF2, nuclear transport 35.6 24 0.0008 27.3 2.8 26 118-143 87-112 (129)
28 1gy6_A Nuclear transport facto 33.8 26 0.0009 26.9 2.8 25 119-143 84-108 (127)
29 2qiy_A UBP3-associated protein 33.5 26 0.00089 27.8 2.8 27 117-143 105-131 (154)
30 2rm4_A CG6311-PB, DM EDC3; enh 32.6 15 0.0005 28.6 1.1 46 100-153 24-69 (103)
31 1jkg_A P15; NTF2-like domain, 32.5 28 0.00097 27.1 2.8 25 118-142 93-117 (140)
32 1dgw_Y Canavalin; duplicated s 29.4 39 0.0013 25.4 3.0 48 82-141 3-50 (93)
33 1gy7_A Nuclear transport facto 28.6 36 0.0012 26.0 2.8 24 119-142 83-107 (125)
34 2e6z_A Transcription elongatio 27.7 34 0.0012 23.3 2.2 26 87-112 6-31 (59)
35 2ckk_A KIN17; beta barrel, rib 20.8 51 0.0018 25.9 2.3 23 91-113 73-95 (127)
36 1nz9_A Transcription antitermi 20.7 1.4E+02 0.0048 19.6 4.2 33 88-120 4-37 (58)
No 1
>3iz5_G 60S ribosomal protein L6 (L6E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_G
Probab=100.00 E-value=5.8e-91 Score=608.41 Aligned_cols=214 Identities=66% Similarity=1.063 Sum_probs=203.0
Q ss_pred ccccCccccchhhhhhccccceeeecCCCcCCCCCCCCCceeecCCCCCCCCCCCCCCccccCCCCCcccccccccCCcE
Q 026764 15 DLIRGVGKFSRSKMYHKRGLWAIKAKNGGVFPKHDPKPAAAETPAKPPKFYPADDVKKPLVNKRKHKPTKLRASITPGTV 94 (233)
Q Consensus 15 ~l~~Gi~r~Srs~~y~rk~~~~~k~k~gg~~~kng~~~~r~v~~~k~p~~Yptedv~~~~~~~k~~~~~klR~SitpGtv 94 (233)
+|++||+|||||+||+++|+|+.|.++||.+|++. .....++|+||||||+|+++.+++++|+++||+||+||||
T Consensus 6 ~l~~Gi~r~s~s~my~k~~~~~~k~k~gg~~~~~~-----k~~~~~~p~~YPtedv~~~~~~~k~~~~~klR~si~pGtV 80 (219)
T 3iz5_G 6 KMALGIKRASRSHTYHRRGLWAIKAKHGGALPKAE-----KPAAIAEPKFYPADDVKPRTVSTRKPHPTKLRSTITPGTV 80 (219)
T ss_dssp HHHTTTSHHHHHHHHHHHHHCSCTHHHHHHCCCCC-----CCCSSCCCCCCSSTTHHHHHHHHHTTHHHHHHHHCSCCSC
T ss_pred hhhcchhhhhHHHHHHHHHHHHHhcccCCcccccc-----ccccccccCcCCccccccccccccCcCcccccccccCCCE
Confidence 79999999999999999999999988899888653 2245568999999999999777889999999999999999
Q ss_pred EEEecceecCceEEEEeeccCceEEEeccceecCcceeeeecceEEeeeeeEecCCcccCCCChhhhhHHHhhhhccccc
Q 026764 95 FILLAGRFMGKRVVFLKQLTSGLLLVTGPFKVNGVPLRRVNQSYVIATSTKVDISGVDLGKFDDQYFEKEAEKKKKKGEG 174 (233)
Q Consensus 95 lIlL~Gr~~GKRvVfLKqL~sglLLVTGP~~lNgvPlrRv~q~yVIaTSTkvdis~vki~~~~D~YF~k~~~~k~k~~e~ 174 (233)
||||+|+|+||||||||||+||||||||||.||||||||+||+|||||||+||||+|+|++|||+||++++.++++++|+
T Consensus 81 lIil~Gr~~GKrvVfLkqL~sgllLVtGP~~lNgVplrR~~qk~viaTstkIdIs~Vki~~l~D~YF~k~k~~k~k~~E~ 160 (219)
T 3iz5_G 81 LILLAGRYMGKRVVFLKQLQSGLLLITGPFKINGVPIRRVNQAYVIATSTKVDISKVNVQKFDDKYFAREKKTRAKKTEG 160 (219)
T ss_dssp EECSSSSSSCCEECEEEESSSSSEEECCCCSSSCCCCEEESSSSCEECSCCCSCSSCCCSSCCCSSHHHHHHHHHHHHHH
T ss_pred EEEeccccCCcEEEEEEecCCCeEEEcCCccccCCccEEechhhEEecceEeecCccccccccHHHHhhhhhcccccchh
Confidence 99999999999999999999999999999999999999999999999999999999999779999999998888999999
Q ss_pred ccccccccccccCChhhHHhHHHHHHHHHHHHHhhhhHHhhhcCcccccCCCCccccCC
Q 026764 175 EFFEAEKEEKKVLPDDKKDDQKTVDAQLIKSIEAVLDLKTYLSARFSLKSGMKPHELVF 233 (233)
Q Consensus 175 eiF~~~k~~k~~vseqrk~dQK~VD~~il~~Ikk~p~L~~YL~s~FsL~~g~~PH~m~F 233 (233)
|||+++++|+|++||||++|||+||++||++|+++|+|++||+|+|+|+||||||+|+|
T Consensus 161 eiF~~~k~ek~~iseqrk~dQK~VD~~ll~~IKk~p~L~~YL~s~FsL~~g~~PH~l~F 219 (219)
T 3iz5_G 161 ELFESDKEATKNLPDFKKDDQKVIDAELIKAIDAVPDLKNYLGARFSLRDGDKPHEMTF 219 (219)
T ss_dssp HHHHHHHHHCSCTHHHHHHHHHCSCCCSCCCCCCCCCTHHHHHHHHHHHHTTSSSSCCC
T ss_pred hhhcccccccccCCHHHHHHHHHHHHHHHHHHhcCHHHHhhccceeECCCCCcCcccCC
Confidence 99998866899999999999999999999999999999999999999999999999999
No 2
>3izc_G 60S ribosomal protein RPL6 (L6E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_G 3o58_F 3o5h_F 3u5e_E 3u5i_E 4b6a_E
Probab=100.00 E-value=2.9e-82 Score=538.59 Aligned_cols=176 Identities=54% Similarity=0.858 Sum_probs=170.5
Q ss_pred eecCCCCCCCCCCCCCCccccCCCCCcccccccccCCcEEEEecceecCceEEEEeeccCceEEEeccceecCcceeeee
Q 026764 56 ETPAKPPKFYPADDVKKPLVNKRKHKPTKLRASITPGTVFILLAGRFMGKRVVFLKQLTSGLLLVTGPFKVNGVPLRRVN 135 (233)
Q Consensus 56 v~~~k~p~~Yptedv~~~~~~~k~~~~~klR~SitpGtvlIlL~Gr~~GKRvVfLKqL~sglLLVTGP~~lNgvPlrRv~ 135 (233)
|+++|||+||||||+|+++.+++++|+++||+||+||||||||+|||+||||||||||+||||||||||+||||||||+|
T Consensus 1 ~~~~k~p~~YPtedv~~~~~~~k~~~~~klR~Si~pGtvlIil~Gr~~GkrvVfLKql~sglllVTGP~~lNgvplrR~~ 80 (176)
T 3izc_G 1 MSAQKAPKWYPSEDVAALKKTRKAARPQKLRASLVPGTVLILLAGRFRGKRVVYLKHLEDNTLLISGPFKVNGVPLRRVN 80 (176)
T ss_dssp CCSSCCCCCCCCCCCCCCCTTTSTTSSCSHHHHCCCCSCEECCSSSSSCCCBEEEEESSSSSEEEECCCSSSCCCCEEES
T ss_pred CCcccccCcCCccccccccccccccccccccccCCCCCEEEEeccccCCCEEEEEEecCCCeEEEecCceecCCcceeee
Confidence 46889999999999999988888999999999999999999999999999999999999999999999999999999999
Q ss_pred cceEEeeeeeEecCCcccCCCChhhhhHHHhhhhcccccccccccccccccCChhhHHhHHHHHHHHHHHHHhhhhHHhh
Q 026764 136 QSYVIATSTKVDISGVDLGKFDDQYFEKEAEKKKKKGEGEFFEAEKEEKKVLPDDKKDDQKTVDAQLIKSIEAVLDLKTY 215 (233)
Q Consensus 136 q~yVIaTSTkvdis~vki~~~~D~YF~k~~~~k~k~~e~eiF~~~k~~k~~vseqrk~dQK~VD~~il~~Ikk~p~L~~Y 215 (233)
|+|||||||+||||||++++|||+||++++.++++++|+|||+++ |+|++||||++|||+||++||++|+++|+|++|
T Consensus 81 q~~vIaTstkidis~vki~~l~D~YF~k~k~~k~k~~E~eiF~~~--ek~~vseqrk~dQK~VD~~ll~~Ikk~p~L~~Y 158 (176)
T 3izc_G 81 ARYVIATSTKVSVEGVNVEKFNVEYFAKEKLTKKEKKEANLFPEQ--QNKEIKAERVEDQKVVDKALIAEIKKTPLLKQY 158 (176)
T ss_dssp SSSCEECSCCCSSSSCCCSSCCCSSHHHHHHHHHHHHHHHHHHHH--HTTCSTTHHHHHHHCSCCTTCCCCCCCCCTHHH
T ss_pred cceEEeeeeeeecccccccccCHHHhhhhhccccccchhhhcccc--ccccCCHHHHHHHHHHHHHHHHHHhcCHHHHHh
Confidence 999999999999999999779999999988888999999999754 899999999999999999999999999999999
Q ss_pred hcCcccccCCCCccccCC
Q 026764 216 LSARFSLKSGMKPHELVF 233 (233)
Q Consensus 216 L~s~FsL~~g~~PH~m~F 233 (233)
|+|+|+|+||||||+|+|
T Consensus 159 L~s~FsL~~g~~PH~m~F 176 (176)
T 3izc_G 159 LSASFSLKNGDKPHMLKF 176 (176)
T ss_dssp HHHHHHHHHHCCCSCCCC
T ss_pred ccceeECCCCCccccccC
Confidence 999999999999999999
No 3
>4a18_E RPL6; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_E 4a1b_E 4a1d_E
Probab=100.00 E-value=1.6e-74 Score=496.22 Aligned_cols=173 Identities=53% Similarity=0.889 Sum_probs=163.3
Q ss_pred cCCCCCCCCCCCCCCccccC--CCCCcccccccccCCcEEEEecceecCceEEEEeeccCceEEEeccceecCcceeeee
Q 026764 58 PAKPPKFYPADDVKKPLVNK--RKHKPTKLRASITPGTVFILLAGRFMGKRVVFLKQLTSGLLLVTGPFKVNGVPLRRVN 135 (233)
Q Consensus 58 ~~k~p~~Yptedv~~~~~~~--k~~~~~klR~SitpGtvlIlL~Gr~~GKRvVfLKqL~sglLLVTGP~~lNgvPlrRv~ 135 (233)
.+|||+||||||+|+++.++ +++|+++||+||+||||||||+|||+||||||||||+|||||||||++||||||||+|
T Consensus 12 ~~k~p~~YPtedv~~~~~~~~~~~~~~~klr~si~pGtVlIiL~Gr~~GKrvV~LKql~sgllLVtGP~~vn~vplrrvn 91 (191)
T 4a18_E 12 VSKISKWYKADDEATPFHRRQLKKATATKLRNDIAPGTVLILLAGRFRGKRVVFLKQLKSGLLLVTGPYKVNGVPLKRVN 91 (191)
T ss_dssp TTSHHHHCCCCCSCCCCCCTTTTTCCCCCCCTTCCTTEEEEECSSTTTTBEEEEEEECTTSCEEEECCTTTSSCCSEEEC
T ss_pred cccccccCCcccccccccccccccccchhhhccccCCCEEEEeccccCCCEEEEEEecCCCeEEEecCccccCCceEEEe
Confidence 56999999999999997777 6899999999999999999999999999999999999999999999999999999999
Q ss_pred cceEEeeeeeEecCCcccCCCChhhhhHHHhhhhccccccccccc---cccccc--CChhhHHhHHHHHHHHHHHHHhhh
Q 026764 136 QSYVIATSTKVDISGVDLGKFDDQYFEKEAEKKKKKGEGEFFEAE---KEEKKV--LPDDKKDDQKTVDAQLIKSIEAVL 210 (233)
Q Consensus 136 q~yVIaTSTkvdis~vki~~~~D~YF~k~~~~k~k~~e~eiF~~~---k~~k~~--vseqrk~dQK~VD~~il~~Ikk~p 210 (233)
|+|||||||+||||||++++|||+||++++ ++++|+|||+++ ++++|+ +||||++|||+||++||++|+++|
T Consensus 92 ~~~vi~TstkvDis~vki~~~~d~YF~k~k---~k~~e~eiF~~~~~~kek~~~~~iseqrk~dQK~VD~~ll~~IKk~p 168 (191)
T 4a18_E 92 QAYTLSTSTKVDLTGVNTAKFEDDYFGREK---ARKNHKNLFKAELTEEQKKKETERKNARKQDQQAVDTPLLAAVKKVE 168 (191)
T ss_dssp GGGEEEEEEECCCTTCCGGGCCGGGSCCCC---CCCCTTTTSCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTST
T ss_pred eeeEEeeeeEeecccccccccCHHHhcccc---cccchhhhhcccccchhhcccccccHHHHHHHHHHHHHHHHHHhcCH
Confidence 999999999999999999999999999764 378999999876 433355 999999999999999999999999
Q ss_pred hHHhhhcCcccccCCCCccccCC
Q 026764 211 DLKTYLSARFSLKSGMKPHELVF 233 (233)
Q Consensus 211 ~L~~YL~s~FsL~~g~~PH~m~F 233 (233)
+|++||+|+|+|+||||||+|+|
T Consensus 169 ~L~~YL~s~FsL~~g~~PH~m~F 191 (191)
T 4a18_E 169 FLKNYLASKFTLNNNDRPHEMKF 191 (191)
T ss_dssp THHHHHHSBCCCCTTCCTTTCCC
T ss_pred HHHhhccceeECCCCCcCccccC
Confidence 99999999999999999999999
No 4
>2joy_A 50S ribosomal protein L14E; protein solution structure, structural genomics, PSI-2, protein structure initiative; NMR {Sulfolobus solfataricus} SCOP: b.34.5.7 PDB: 2kds_A
Probab=99.78 E-value=1.4e-19 Score=140.41 Aligned_cols=74 Identities=31% Similarity=0.483 Sum_probs=68.3
Q ss_pred cccCCcEEEEecceecCceEEEEeeccCceEEEeccceecCcceeeeecceEEeeeeeEecCCcccCCCChhhhhHHH
Q 026764 88 SITPGTVFILLAGRFMGKRVVFLKQLTSGLLLVTGPFKVNGVPLRRVNQSYVIATSTKVDISGVDLGKFDDQYFEKEA 165 (233)
Q Consensus 88 SitpGtvlIlL~Gr~~GKRvVfLKqL~sglLLVTGP~~lNgvPlrRv~q~yVIaTSTkvdis~vki~~~~D~YF~k~~ 165 (233)
+++||+|+|+++|||+||++|||+++++|++||+||...|++|.+|+|++|+++|++++|+.. .++|+|+++.-
T Consensus 3 ~v~~GrVv~~~~Gr~~Gk~~VIv~~iD~~~vLV~gp~~~~~~~rk~~n~khl~~T~~~vdi~~----~~~~~~vrkal 76 (96)
T 2joy_A 3 AIEVGRICVKVKGREAGSKCVIVDIIDDNFVLVTGPKDITGVKRRRVNILHLEPTDKKIDIQK----GASDEEVKKKL 76 (96)
T ss_dssp SSSTTEEEECSSSSTTCCEEEEEEECSSSCEEEECCTTTTCCCCEEESCSSCEEEEEECCCCS----SCCHHHHHHHH
T ss_pred ccccCEEEEEeecCCCCCEEEEEEEeCCCEEEEECCcccCCcCCEEEchHHEEEeeEEEeCCC----CCChHHHHHHH
Confidence 589999999999999999999999999999999999999999999999999999999999532 26999998643
No 5
>4a18_N RPL27, ribosomal protein L22; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_N 4a1b_N 4a1d_N
Probab=99.42 E-value=8.6e-14 Score=115.25 Aligned_cols=73 Identities=32% Similarity=0.435 Sum_probs=62.9
Q ss_pred cccCCcEEEEecceecCceEEEEeeccC-------ceEEEec----cceecC-------cceee-------eecceEEee
Q 026764 88 SITPGTVFILLAGRFMGKRVVFLKQLTS-------GLLLVTG----PFKVNG-------VPLRR-------VNQSYVIAT 142 (233)
Q Consensus 88 SitpGtvlIlL~Gr~~GKRvVfLKqL~s-------glLLVTG----P~~lNg-------vPlrR-------v~q~yVIaT 142 (233)
-++||+|+|+|+|||+|++||+||++++ |.+||+| |.++++ ++..+ +|.+|+++|
T Consensus 4 f~kpGrVvivl~Gr~aGkkaVIvk~iD~gt~d~~y~~aLVaGIdryP~kvt~~m~kkki~kRskiK~FvK~vN~~Hl~pT 83 (144)
T 4a18_N 4 FLKYGRVVILLQGRFAGKKAVIVKSSEDGTKDRKFGHVLVAGVERSPKKVTKRMGSKKIQKRTSVKPFIKYVNLNHIMPT 83 (144)
T ss_dssp CCCTTEEEEECSSTTTTCEEEEEEEESSCCSSCCSCEEEEEEEEECCCCCCSSCCHHHHHHTTCCEEEEEEEEGGGEEEE
T ss_pred cccCCeEEEEecCCcCCCEEEEEEecCCCccCCccceEEEEecccCCchhccccchheeccccccceeEEEEeeeeEEEe
Confidence 3789999999999999999999999999 7999999 999999 88888 999999999
Q ss_pred eeeE--ecCCcccCCCChhhhh
Q 026764 143 STKV--DISGVDLGKFDDQYFE 162 (233)
Q Consensus 143 STkv--dis~vki~~~~D~YF~ 162 (233)
++.| ||. ++ .-++.+-|+
T Consensus 84 ry~v~~di~-lK-~~v~~d~~~ 103 (144)
T 4a18_N 84 RYSVKELCD-FK-ELVKEDKIK 103 (144)
T ss_dssp EEECSTTCC-HH-HHSCHHHHH
T ss_pred eEEeeccCc-hh-hccCHHHhh
Confidence 9999 874 22 115555554
No 6
>3j21_5 50S ribosomal protein L14E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=99.15 E-value=2.7e-11 Score=91.85 Aligned_cols=61 Identities=33% Similarity=0.547 Sum_probs=57.6
Q ss_pred cccCCcEEEEecceecCceEEEEeeccCceEEEeccceecCcceeeeecceEEeeeeeEecC
Q 026764 88 SITPGTVFILLAGRFMGKRVVFLKQLTSGLLLVTGPFKVNGVPLRRVNQSYVIATSTKVDIS 149 (233)
Q Consensus 88 SitpGtvlIlL~Gr~~GKRvVfLKqL~sglLLVTGP~~lNgvPlrRv~q~yVIaTSTkvdis 149 (233)
.+.+|.|+++++||++|+.+|+++.++++.+||.|| .++|||.+++|.+++..|+.+|++.
T Consensus 3 ~~~~Grvv~~~~Gr~~Gk~~vIv~iiD~~~vlV~g~-~~~~v~rk~kn~khl~lt~~~i~~~ 63 (83)
T 3j21_5 3 AIDVGRIAVVIAGRRAGQKVVVVDIIDKNFVLVTGA-GLNKVKRRRMNIKHIEPLPQKIDIP 63 (83)
T ss_dssp CCCTTEEEECSSSSSSCCCEEEEEECSSSCEEEECC-TTTTCCCEEESCSSCEEEEEECCCC
T ss_pred ccccCEEEEEeecCCCCCEEEEEEEcCCCEEEEECC-ccCccCCeEechHHEEEeeEEEECC
Confidence 478999999999999999999999999999999999 6799999999999999999998754
No 7
>3izc_N 60S ribosomal protein RPL14 (L14E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_N 3o58_N 3o5h_N 3u5e_M 3u5i_M 4b6a_M
Probab=98.97 E-value=4.9e-10 Score=92.23 Aligned_cols=61 Identities=23% Similarity=0.423 Sum_probs=57.8
Q ss_pred ccccCCcEEEEecceecCceEEEEeeccCceEEEeccceecCcceeeeecceEEeeeeeEecC
Q 026764 87 ASITPGTVFILLAGRFMGKRVVFLKQLTSGLLLVTGPFKVNGVPLRRVNQSYVIATSTKVDIS 149 (233)
Q Consensus 87 ~SitpGtvlIlL~Gr~~GKRvVfLKqL~sglLLVTGP~~lNgvPlrRv~q~yVIaTSTkvdis 149 (233)
.-+.||.|+++++|+++|+.+|+++.++++.+||.|| .+|||.+++|-+++..|+..|||+
T Consensus 13 rfve~GrVV~i~~Gr~aGk~avIV~iiD~~rVLVDGp--~~gV~R~~~n~khL~lT~~~v~i~ 73 (138)
T 3izc_N 13 RLVEVGRVVLIKKGQSAGKLAAIVEIIDQKKVLIDGP--KAGVPRQAINLGQVVLTPLTFALP 73 (138)
T ss_dssp CCSSTTEEEECCSCSSSCCEEEEEEECSSSEEEEECS--SSSCCCEEEECSSSEEEEEECCCC
T ss_pred hhcccCeEEEEeeCCCCCCEEEEEEEecCCEEEEEcC--CCCcccceechhHeEEecEEEEcc
Confidence 4578999999999999999999999999999999999 589999999999999999999886
No 8
>3izc_a 60S ribosomal protein RPL27 (L27E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_a 3u5e_Z 3u5i_Z 4b6a_Z
Probab=98.91 E-value=4.1e-12 Score=104.33 Aligned_cols=63 Identities=30% Similarity=0.564 Sum_probs=53.2
Q ss_pred cccCCcEEEEecceecCceEEEEeeccCc-------eEEEec----cceecC-------cceeee-------ecceEEee
Q 026764 88 SITPGTVFILLAGRFMGKRVVFLKQLTSG-------LLLVTG----PFKVNG-------VPLRRV-------NQSYVIAT 142 (233)
Q Consensus 88 SitpGtvlIlL~Gr~~GKRvVfLKqL~sg-------lLLVTG----P~~lNg-------vPlrRv-------~q~yVIaT 142 (233)
-++||+|+|+|+|||+|++||+||++++| .+||+| |.++.+ .--.++ |-+++++|
T Consensus 4 f~kpGkVvivl~GryaGkKaVivk~~d~gt~d~py~halVaGIdryP~kvt~~Mgkkki~KrskiK~FvKv~NynHlmPT 83 (136)
T 3izc_a 4 FLKAGKVAVVVRGRYAGKKVVIVKPHDEGSKSHPFGHALVAGIERYPLKVTKKHGAKKVAKRTKIKPFIKVVNYNHLLPT 83 (136)
T ss_dssp -CCCCCCCBCCCSSSSCCBCBCCCCSSSCSCCSSSCCSCCBCCSSSSCCCCCCSSSCCCCCCTTHHHHHHHHHHHHHHHH
T ss_pred cccCCEEEEEeccccCCcEEEEEEecCCCCCCCccceEEEEecccCChhhhhccCHHHHHhhhhceeeeEEEeccceeee
Confidence 37899999999999999999999999998 899999 666655 223444 99999999
Q ss_pred eeeEecCC
Q 026764 143 STKVDISG 150 (233)
Q Consensus 143 STkvdis~ 150 (233)
...|||..
T Consensus 84 Ry~vdi~~ 91 (136)
T 3izc_a 84 RYTLDVEA 91 (136)
T ss_dssp HHHHHHHH
T ss_pred eeeEcccc
Confidence 99999853
No 9
>3iz5_a 60S ribosomal protein L27 (L27E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_a
Probab=98.80 E-value=3.3e-11 Score=98.94 Aligned_cols=62 Identities=35% Similarity=0.600 Sum_probs=53.1
Q ss_pred cccCCcEEEEecceecCceEEEEeeccCc-------eEEEec----cceecC-------cceeee-------ecceEEee
Q 026764 88 SITPGTVFILLAGRFMGKRVVFLKQLTSG-------LLLVTG----PFKVNG-------VPLRRV-------NQSYVIAT 142 (233)
Q Consensus 88 SitpGtvlIlL~Gr~~GKRvVfLKqL~sg-------lLLVTG----P~~lNg-------vPlrRv-------~q~yVIaT 142 (233)
-++||+|+|+|+|||+|++||+||++++| .+||+| |.++.+ .--.++ |-+++++|
T Consensus 4 ~~kpGkVvivl~GryaGkKaVivk~~d~gt~drpy~halVaGIdryP~kvt~~M~kkki~KrskiK~FvKv~NynHlmPT 83 (136)
T 3iz5_a 4 FLKPGKAVILLQGRFAGRKAVIVRVFEEGTRDRPYGHCLVAGLAKYPKKVIRKDSAKKTAKKSRVKCFLKLVNFTHLMPT 83 (136)
T ss_dssp SCCCCCSCCCCCSSSSCCCCBCSCCSSSSSCSCSSCCSCCBCCSTTTTCCCCCCSSSCCCCCHHHHHHHHHHHHHHHHHH
T ss_pred cccCCEEEEEeccccCCcEEEEEEecCCCCCCCccceEEEEeeccCChhhccCCCHHHhhhhhhceeeeEEEeecceecc
Confidence 37899999999999999999999999998 999999 666655 223444 99999999
Q ss_pred eeeEecC
Q 026764 143 STKVDIS 149 (233)
Q Consensus 143 STkvdis 149 (233)
...|||.
T Consensus 84 RY~vdi~ 90 (136)
T 3iz5_a 84 RYTLDVD 90 (136)
T ss_dssp HHHHHHH
T ss_pred ceEeecc
Confidence 9999884
No 10
>3iz5_N 60S ribosomal protein L14 (L14E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_N
Probab=98.54 E-value=6e-08 Score=79.46 Aligned_cols=58 Identities=24% Similarity=0.292 Sum_probs=55.1
Q ss_pred cccCCcEEEEecceecCceEEEEeeccCceEEEeccceecCcceeeeecceEEeeeeeEecC
Q 026764 88 SITPGTVFILLAGRFMGKRVVFLKQLTSGLLLVTGPFKVNGVPLRRVNQSYVIATSTKVDIS 149 (233)
Q Consensus 88 SitpGtvlIlL~Gr~~GKRvVfLKqL~sglLLVTGP~~lNgvPlrRv~q~yVIaTSTkvdis 149 (233)
=+.||.|++++.|+++|+.+|+++.++++.+||.||. ||-+.+|-+++..|...|||.
T Consensus 6 fvevGRVV~i~~Gr~aGk~avIV~iiD~~rvLVdG~~----v~Rk~~n~khL~lT~~~v~i~ 63 (134)
T 3iz5_N 6 FVEIGRVALVNYGKDYGRLVVIVDVVDQNRALVDAPD----MVRCQINFKRLSLTDIKIDIK 63 (134)
T ss_dssp SCCSSEEEECSCCSSSCCEEEEEEECSSSEEEEEETT----EEEEEEECTTSEEEEEECCCC
T ss_pred ccccCeEEEEeeCCCCCCEEEEEEEcCCCeEEEeCCC----ccceeechhHeEEeCEEEecc
Confidence 4789999999999999999999999999999999997 899999999999999999875
No 11
>4a18_F RPL14; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_F 4a1b_F 4a1d_F 4adx_7
Probab=98.24 E-value=1.1e-06 Score=71.40 Aligned_cols=58 Identities=19% Similarity=0.264 Sum_probs=54.3
Q ss_pred cccCCcEEEEecceecCceEEEEeeccCceEEEeccceecCcceeeeecceEEeeeeeEe-cC
Q 026764 88 SITPGTVFILLAGRFMGKRVVFLKQLTSGLLLVTGPFKVNGVPLRRVNQSYVIATSTKVD-IS 149 (233)
Q Consensus 88 SitpGtvlIlL~Gr~~GKRvVfLKqL~sglLLVTGP~~lNgvPlrRv~q~yVIaTSTkvd-is 149 (233)
=+.+|.|++++.|+++||-||++..++.+.+||.||- ||.+.+|-+++..|.-+|| |.
T Consensus 6 fvevGRVv~i~~G~~aGklavIVdIID~nrvLVdGp~----V~Rq~~n~k~l~LT~~~v~~i~ 64 (126)
T 4a18_F 6 FVQVGRVVYINYGADKGKLAVIVNIINQNRILIDGEH----IVRQVIPIRRVHLTKFQIDNVE 64 (126)
T ss_dssp EEETTEEEEECSSTTTTEEEEEEEEETTTEEEEEETT----EEEEEEEGGGEEEEEEECTTCC
T ss_pred ceecceEEEEccCCccCCEEEEEEEecCCeEEEeCCC----cccceeeccceEEcceeccccC
Confidence 3679999999999999999999999999999999996 9999999999999999887 63
No 12
>2zjr_R 50S ribosomal protein L24; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: b.34.5.1 PDB: 1nwx_S* 1nwy_S* 1sm1_S* 1xbp_S* 2d3o_S 2zjp_R* 2zjq_R 1nkw_S 3cf5_R* 3dll_R* 3pio_R* 3pip_R* 1pnu_S 1pny_S 1vor_V 1vou_V 1vow_V 1voy_V 1vp0_V
Probab=95.28 E-value=0.013 Score=46.57 Aligned_cols=67 Identities=27% Similarity=0.307 Sum_probs=50.2
Q ss_pred cccccccccCCcEEEEecceecCceEEEEeec-cCceEEEeccceecCc-----ceeeeecceEEeeeeeEecCCccc
Q 026764 82 PTKLRASITPGTVFILLAGRFMGKRVVFLKQL-TSGLLLVTGPFKVNGV-----PLRRVNQSYVIATSTKVDISGVDL 153 (233)
Q Consensus 82 ~~klR~SitpGtvlIlL~Gr~~GKRvVfLKqL-~sglLLVTGP~~lNgv-----PlrRv~q~yVIaTSTkvdis~vki 153 (233)
.+++ .|..|+.+++++|.++||+-..|+-+ +.+-++|.| +|-+ |-..-.|-=++....-|++|||.+
T Consensus 11 ~rkm--~IkkGD~V~Vi~GkdKGk~GkV~~V~~~~~~V~VEG---vN~~kkh~kp~~~~~~Ggiv~~e~PIh~SNV~l 83 (115)
T 2zjr_R 11 NDKL--HFKKGDTVIVLSGKHKGQTGKVLLALPRDQKVVVEG---VNVITKNVKPSMTNPQGGQEQRELALHASKVAL 83 (115)
T ss_dssp TSCC--SSCTTSEEECCSSSSTTCEEEEEEEETTTTEEEESS---SCBCCCCCCTTSSSCCCCCCCBCCCBCSSSEEC
T ss_pred ceeC--cccCCCEEEEeEcCCCCcEEEEEEEECCCCEEEEeC---cEeEEEecCCCcCCCCCCEEEEEcccCHHHEEE
Confidence 3445 58899999999999999999999987 478999999 7755 221112333444566789999977
No 13
>3r8s_U 50S ribosomal protein L24; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 2j28_U* 3fik_U 3j19_U 2wwq_U 3oat_U* 3oas_U* 3ofd_U 3ofc_U 3ofr_U* 3ofz_U* 3og0_U 3ofq_U 3r8t_U 3i1n_U 1vs8_U 1vs6_U 1vt2_U 3i1p_U 3i1r_U 3i1t_U ...
Probab=94.36 E-value=0.059 Score=41.96 Aligned_cols=62 Identities=26% Similarity=0.382 Sum_probs=48.3
Q ss_pred ccCCcEEEEecceecCceEEEEeeccCceEEEeccceecCcceee------eecceEEeeeeeEecCCccc
Q 026764 89 ITPGTVFILLAGRFMGKRVVFLKQLTSGLLLVTGPFKVNGVPLRR------VNQSYVIATSTKVDISGVDL 153 (233)
Q Consensus 89 itpGtvlIlL~Gr~~GKRvVfLKqL~sglLLVTGP~~lNgvPlrR------v~q~yVIaTSTkvdis~vki 153 (233)
|..|+-+++++|.++||.-..|+-+..+-++|.| +|-+--.- -.|-=+|....-|++|||.+
T Consensus 4 IkkGD~V~Vi~GkdKGk~GkV~~V~~~~~ViVeG---vN~~kkh~kp~~~~~~~Ggi~~~E~PIh~SNV~l 71 (102)
T 3r8s_U 4 IRRDDEVIVLTGKDKGKRGKVKNVLSSGKVIVEG---INLVKKHQKPVPALNQPGGIVEKEAAIQVSNVAI 71 (102)
T ss_dssp SCSSCEEEECSSSSTTCEEEEEEEETTTEEEETT---CSEEEEEECCCSSSSCSCEEEEEECCEEGGGEEE
T ss_pred ccCCCEEEEeEcCCCCeeeEEEEEEeCCEEEEeC---eEEEEeccccCcccCCCCCEEEEECCcCHHHEEE
Confidence 6789999999999999999999988669999998 66432211 22344666667899999977
No 14
>2zkr_t 60S ribosomal protein L26; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=94.03 E-value=0.036 Score=45.76 Aligned_cols=64 Identities=14% Similarity=0.217 Sum_probs=47.6
Q ss_pred cccCCcEEEEecceecCce-EEEEeec-cCceEEEeccceecCcceeeeecceEEeeeeeEecCCccc--CCCChhh
Q 026764 88 SITPGTVFILLAGRFMGKR-VVFLKQL-TSGLLLVTGPFKVNGVPLRRVNQSYVIATSTKVDISGVDL--GKFDDQY 160 (233)
Q Consensus 88 SitpGtvlIlL~Gr~~GKR-vVfLKqL-~sglLLVTGP~~lNgvPlrRv~q~yVIaTSTkvdis~vki--~~~~D~Y 160 (233)
.|..|+.|+|++|.++|+. -..|.-+ ..+-++|.| ||- .+.+- +....-|++|||.+ ++.+++-
T Consensus 48 ~IkkGD~V~Vi~GkdKGk~~GkV~~V~~k~~~V~VEg---vn~---~Kp~G---~~~e~PIh~SNV~lv~~~~~k~~ 115 (145)
T 2zkr_t 48 PIRKDDEVQVVRGHYKGQQIGKVVQVYRKKYVIYIER---VQR---EKANG---TTVHVGIHPSKVVITRLKLDKDR 115 (145)
T ss_dssp BCCTTCEEEECSSTTTTCCSEEEEEEETTTTEEEETT---CEE---ECSSC---CEEECCBCGGGEEECC-CCCHHH
T ss_pred ccCCCCEEEEeecCCCCcceeEEEEEECCCCEEEEee---eEe---EcCCC---ceEEeccCHHHEEEEcCcCCchH
Confidence 3889999999999999999 8888887 478999888 663 33332 34445689999988 3455543
No 15
>3j21_U 50S ribosomal protein L24P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=93.76 E-value=0.049 Score=43.66 Aligned_cols=62 Identities=15% Similarity=0.156 Sum_probs=47.3
Q ss_pred cccCCcEEEEecceecCceEEEEeec-cCceEEEeccceecCcceeeeecceEEeeeeeEecCCccc--CCCCh
Q 026764 88 SITPGTVFILLAGRFMGKRVVFLKQL-TSGLLLVTGPFKVNGVPLRRVNQSYVIATSTKVDISGVDL--GKFDD 158 (233)
Q Consensus 88 SitpGtvlIlL~Gr~~GKRvVfLKqL-~sglLLVTGP~~lNgvPlrRv~q~yVIaTSTkvdis~vki--~~~~D 158 (233)
.|..|+-|++++|.++|+.-..++-+ +.+-++|.| ||-+- .|. +....-|++|||.+ +.++|
T Consensus 45 ~IkkGD~V~Vi~GkdKGk~GkV~~V~~k~~~V~VEg---vn~~k---~~G---~~~e~pIh~SNV~l~~~~~~d 109 (121)
T 3j21_U 45 PVRVGDKVRIMRGDYKGHEGKVVEVDLKRYRIYVEG---ATLRK---TNG---TEVFYPIHPSNVMIIELNLED 109 (121)
T ss_dssp ECCSSSEEEECSSSCSSEEEEEEEEETTTTEEEETT---CEEEC---SSS---CEEECCBCGGGEEEEECCCCC
T ss_pred ccccCCEEEEeecCCCCcEeEEEEEEecCCEEEEeC---eEEEe---cCC---cEEEcccCHHHeEEEcCccCC
Confidence 37799999999999999999999987 478999998 55332 233 34456889999987 34444
No 16
>1vq8_T 50S ribosomal protein L24P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: b.34.5.1 PDB: 1vq4_T* 1vq5_T* 1vq6_T* 1vq7_T* 1s72_T* 1vq9_T* 1vqk_T* 1vql_T* 1vqm_T* 1vqn_T* 1vqo_T* 1vqp_T* 1yhq_T* 1yi2_T* 1yij_T* 1yit_T* 1yj9_T* 1yjn_T* 1yjw_T* 2otj_T* ...
Probab=93.65 E-value=0.062 Score=43.04 Aligned_cols=57 Identities=18% Similarity=0.296 Sum_probs=44.7
Q ss_pred cccCCcEEEEecceecCceEEEEeec-cCceEEEeccceecCcceeeeecceEEeeeeeEecCCccc
Q 026764 88 SITPGTVFILLAGRFMGKRVVFLKQL-TSGLLLVTGPFKVNGVPLRRVNQSYVIATSTKVDISGVDL 153 (233)
Q Consensus 88 SitpGtvlIlL~Gr~~GKRvVfLKqL-~sglLLVTGP~~lNgvPlrRv~q~yVIaTSTkvdis~vki 153 (233)
.|..|+.|++++|.++|+.--.++-+ ..+-++|.| +|- .+.+-. ..-.-|++|||.+
T Consensus 42 ~IkkGD~V~Vi~G~dKGk~GkV~~V~~k~~~V~VEg---vn~---kK~~Gg---~~e~pIh~SNV~i 99 (120)
T 1vq8_T 42 RVNAGDTVEVLRGDFAGEEGEVINVDLDKAVIHVED---VTL---EKTDGE---EVPRPLDTSNVRV 99 (120)
T ss_dssp ECCTTCEEEECSSTTTTCEEEEEEEETTTTEEEETT---CEE---ECSSSC---EEECCBCGGGEEE
T ss_pred cccCCCEEEEEecCCCCCEEEEEEEECCCCEEEEeC---eEe---EcCCCC---EEEeeechHHEEE
Confidence 38899999999999999999999987 478999988 652 333333 3344779999987
No 17
>3v2d_Y 50S ribosomal protein L24; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 1vsp_S 2hgj_X 2hgq_X 2hgu_X 1vsa_S 2j03_Y 2jl6_Y 2jl8_Y 2v47_Y 2v49_Y 2wdi_Y 2wdj_Y 2wdl_Y 2wdn_Y 2wh2_Y 2wh4_Y 2wrj_Y 2wrl_Y 2wro_Y 2wrr_Y ...
Probab=93.64 E-value=0.056 Score=42.62 Aligned_cols=63 Identities=21% Similarity=0.267 Sum_probs=49.0
Q ss_pred cccCCcEEEEecceecCceEEEEeecc-CceEEEeccceecCcce-----eeeecceEEeeeeeEecCCccc
Q 026764 88 SITPGTVFILLAGRFMGKRVVFLKQLT-SGLLLVTGPFKVNGVPL-----RRVNQSYVIATSTKVDISGVDL 153 (233)
Q Consensus 88 SitpGtvlIlL~Gr~~GKRvVfLKqL~-sglLLVTGP~~lNgvPl-----rRv~q~yVIaTSTkvdis~vki 153 (233)
.|..|+-+++++|.++||.-..|+-+. .+-++|.| +|-+-- ..-.+-=++....-|++|||.+
T Consensus 6 ~IkkGD~V~Vi~GkdKGk~GkV~~V~~~~~~ViVEG---vN~~kkh~kp~~~~~~Ggi~~~E~PIh~SNV~l 74 (110)
T 3v2d_Y 6 HVKKGDTVLVASGKYKGRVGKVKEVLPKKYAVIVEG---VNIVKKAVRVSPKYPQGGFIEKEAPLHASKVRP 74 (110)
T ss_dssp SCCTTSEEEECSSTTTTCEEEEEEEEGGGTEEEETT---SSEEEEECCSSSSSTTCCEEEEECCEEGGGEEE
T ss_pred ccCCCCEEEEeEcCCCCeEeEEEEEECCCCEEEEeC---EEEEEEEeCCCccCCCCCEEEEECCcCHHHeEE
Confidence 377999999999999999999999876 68999998 664321 1112445677777999999987
No 18
>3u5e_Y L33, YL33, 60S ribosomal protein L26-A; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 2wwa_L 2ww9_L 2wwb_L 3o5h_X 3o58_X 3u5i_Y 4b6a_Y 1s1i_U 3izc_Y 3izs_Y 3jyw_U
Probab=92.59 E-value=0.18 Score=40.76 Aligned_cols=62 Identities=15% Similarity=0.120 Sum_probs=47.2
Q ss_pred ccCCcEEEEecceecCceEEEEeecc-CceEEEeccceecCcceeeeecceEEeeeeeEecCCccc--CCCChh
Q 026764 89 ITPGTVFILLAGRFMGKRVVFLKQLT-SGLLLVTGPFKVNGVPLRRVNQSYVIATSTKVDISGVDL--GKFDDQ 159 (233)
Q Consensus 89 itpGtvlIlL~Gr~~GKRvVfLKqL~-sglLLVTGP~~lNgvPlrRv~q~yVIaTSTkvdis~vki--~~~~D~ 159 (233)
|.-|+-|++++|.++|+.--.|+-+. .+-++|.| ||-+ ..|..- .-.-|++|||-| +++++.
T Consensus 50 IkkgD~V~Vi~GkdKGk~GkV~~V~~kk~~V~VEg---Vn~~---K~~G~~---~e~pIh~SNV~i~~~~~dk~ 114 (127)
T 3u5e_Y 50 IRRDDEVLVVRGSKKGQEGKISSVYRLKFAVQVDK---VTKE---KVNGAS---VPINLHPSKLVITKLHLDKD 114 (127)
T ss_dssp CCTTCEEEECSSTTTTCEEEEEEEEGGGTEEEEET---CEEE---CSSSCE---EECCBCGGGEEEEECCCCHH
T ss_pred ccCCCEEEEeecCCCCccceEEEEECCCCEEEEeC---eEEE---CCCCcE---EEcccchHHEEEEccccCcH
Confidence 67899999999999999999999876 68999998 5543 334432 234789999988 445543
No 19
>2ftc_N Mitochondrial ribosomal protein L24; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus} PDB: 3iy9_N
Probab=92.21 E-value=0.11 Score=39.95 Aligned_cols=58 Identities=19% Similarity=0.245 Sum_probs=44.5
Q ss_pred CcEEEEecceecCceEEEEeec-cCceEEEeccceecCc-----ceeeeecceEEeeeeeEecCCccc
Q 026764 92 GTVFILLAGRFMGKRVVFLKQL-TSGLLLVTGPFKVNGV-----PLRRVNQSYVIATSTKVDISGVDL 153 (233)
Q Consensus 92 GtvlIlL~Gr~~GKRvVfLKqL-~sglLLVTGP~~lNgv-----PlrRv~q~yVIaTSTkvdis~vki 153 (233)
|+-+++++|.++||.-..|+-+ ..+-++|.| +|-+ |-. -.|-=++....-|++|||.+
T Consensus 1 GD~V~Vi~GkdKGk~GkV~~V~~~~~~ViVeG---vN~~kkh~kp~~-~~~Ggiv~~e~pIh~SNV~l 64 (96)
T 2ftc_N 1 GDTVEILEGKDAGKQGKVVQVIRQRNWVVVGG---LNTHYRYIGKTM-DYRGTMIPSEAPLLHRQVKL 64 (96)
T ss_pred CCEEEEeEcCCCCcEEEEEEEECCCCEEEEeC---CEEEEEEcCCCC-CCCCCEEEEecCcCHHHEEE
Confidence 6889999999999999999987 578999999 6654 221 22345565667889999976
No 20
>4a17_S RPL26, 60S ribosomal protein L21; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_S 4a1c_S 4a1e_S
Probab=91.15 E-value=0.19 Score=41.11 Aligned_cols=61 Identities=15% Similarity=0.232 Sum_probs=46.4
Q ss_pred ccCCcEEEEecceecCceEEEEeecc-CceEEEeccceecCcceeeeecceEEeeeeeEecCCccc--CCCCh
Q 026764 89 ITPGTVFILLAGRFMGKRVVFLKQLT-SGLLLVTGPFKVNGVPLRRVNQSYVIATSTKVDISGVDL--GKFDD 158 (233)
Q Consensus 89 itpGtvlIlL~Gr~~GKRvVfLKqL~-sglLLVTGP~~lNgvPlrRv~q~yVIaTSTkvdis~vki--~~~~D 158 (233)
|.-|+-|++++|.++|+.--.|+-+. .+-++|.| ||-+ ..|.. ..-.-|++|||-| +++++
T Consensus 49 IkkgD~V~Vi~GkdKGk~GkV~~V~~kk~~V~VEg---Vn~~---K~~G~---~~e~pIh~SNV~i~~~k~dk 112 (135)
T 4a17_S 49 VRKDDEVLIVRGKFKGNKGKVTQVYRKKWAIHVEK---ISKN---KLNGA---PYQIPLSASQLVLTKLKLDK 112 (135)
T ss_dssp CCTTCEEEECSSTTTTCEEEEEEEETTTTEEEETT---CCEE---ETTTE---EECCCBCGGGEEEEECCCCH
T ss_pred ccCCCEEEEeecCCCCceeeEEEEEcCCCEEEEeC---eEEE---cCCCC---EEEcccchHHEEEEcccCCc
Confidence 77899999999999999999999875 68999888 5543 33432 2344789999988 34543
No 21
>3iz5_Y 60S ribosomal protein L26 (L24P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_Y
Probab=90.63 E-value=0.24 Score=41.08 Aligned_cols=61 Identities=18% Similarity=0.233 Sum_probs=47.0
Q ss_pred ccCCcEEEEecceecCceEEEEeecc-CceEEEeccceecCcceeeeecceEEeeeeeEecCCccc--CCCCh
Q 026764 89 ITPGTVFILLAGRFMGKRVVFLKQLT-SGLLLVTGPFKVNGVPLRRVNQSYVIATSTKVDISGVDL--GKFDD 158 (233)
Q Consensus 89 itpGtvlIlL~Gr~~GKRvVfLKqL~-sglLLVTGP~~lNgvPlrRv~q~yVIaTSTkvdis~vki--~~~~D 158 (233)
|..|+-|++++|.++|+.--.|+-+. .+-++|.| ||-+ .-|.. ..-.-|++|||-| +++++
T Consensus 49 IkKGD~V~Vi~GkdKGk~GkVl~V~~kk~~V~VEG---VN~~---K~~G~---~~eapIh~SNV~i~~~k~dk 112 (150)
T 3iz5_Y 49 IRKDDEVQVVRGSYKGREGKVVQVYRRRWVIHVER---ITRE---KVNGS---TVNVGIHPSKVVVTKLKLDK 112 (150)
T ss_dssp CCSSSEEEECSSTTTTCEEEEEEEETTTTEEEETT---CEEE---CTTSC---EEECCBCGGGEEEEECCCCS
T ss_pred cCCCCEEEEeecCCCCccceEEEEEcCCCEEEEeC---cEEE---eCCCC---EEecccchHHEEEEcccCCh
Confidence 77899999999999999999999876 68999888 5533 33443 2345889999988 44544
No 22
>3bbo_W Ribosomal protein L24; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=86.45 E-value=0.067 Score=46.00 Aligned_cols=63 Identities=17% Similarity=0.169 Sum_probs=47.1
Q ss_pred cccCCcEEEEecceecCceEEEEeec-cCceEEEeccceecCcce-----eeeecceEEeeeeeEecCCccc
Q 026764 88 SITPGTVFILLAGRFMGKRVVFLKQL-TSGLLLVTGPFKVNGVPL-----RRVNQSYVIATSTKVDISGVDL 153 (233)
Q Consensus 88 SitpGtvlIlL~Gr~~GKRvVfLKqL-~sglLLVTGP~~lNgvPl-----rRv~q~yVIaTSTkvdis~vki 153 (233)
.|..||-|++++|.++||.-..|+-+ ..+-++|.| ||-+-- ..-.|-=+|....-|++|||.+
T Consensus 68 kIkKGD~V~VIaGkDKGK~GkVl~V~~k~~rViVEG---VN~vkKH~Kp~~~~~~GgIv~kEaPIhiSNV~L 136 (191)
T 3bbo_W 68 HVKVGDTVKVISGGEKGKIGEISKIHKHNSTVIIKD---LNFKTKHVKSKEEGEQGQIIKIEAAIHSSNVML 136 (191)
T ss_dssp CSCCSSCEEECSSSSTTCCCSCCCCCSSSCCCCCSS---CCCCCCBCCSCCSSSCCBSSCCCCCCCGGGEEE
T ss_pred eeecCCEEEEeecCCCCceEEEEEEECCCCEEEEeC---CEEEEEecCCcccCCCCCEEEEecCcCHHHeEE
Confidence 48899999999999999999999987 478899999 776532 1111233444456788899876
No 23
>2do3_A Transcription elongation factor SPT5; KOW motif, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.34.5.5
Probab=79.31 E-value=2.9 Score=30.43 Aligned_cols=34 Identities=24% Similarity=0.392 Sum_probs=27.3
Q ss_pred cccccccccCCcEEEEecceecCceEEEEeeccC
Q 026764 82 PTKLRASITPGTVFILLAGRFMGKRVVFLKQLTS 115 (233)
Q Consensus 82 ~~klR~SitpGtvlIlL~Gr~~GKRvVfLKqL~s 115 (233)
+..||+-+.+|+-+-++.|+|+|---..++.-++
T Consensus 11 ~~~LrK~F~~GDHVkVi~G~~~getGlVV~v~~d 44 (69)
T 2do3_A 11 AQELRKYFKMGDHVKVIAGRFEGDTGLIVRVEEN 44 (69)
T ss_dssp CCCCCSSCCTTCEEEESSSTTTTCEEEEEEECSS
T ss_pred HHHceeeccCCCeEEEeccEEcCceEEEEEEeCC
Confidence 5678999999999999999999975555555443
No 24
>3q90_A RAS GTPase-activating protein-binding protein 1; structural genomics, structural genomics consortium, SGC, NT (A+B proteins); 1.70A {Homo sapiens} SCOP: d.17.4.0
Probab=52.67 E-value=5.5 Score=31.41 Aligned_cols=27 Identities=33% Similarity=0.513 Sum_probs=22.5
Q ss_pred eEEEeccceecCcceeeeecceEEeee
Q 026764 117 LLLVTGPFKVNGVPLRRVNQSYVIATS 143 (233)
Q Consensus 117 lLLVTGP~~lNgvPlrRv~q~yVIaTS 143 (233)
|++|+|=+..++-|.|+.+|-|+++-.
T Consensus 92 lI~V~G~l~~~~~~~~~F~QtF~L~p~ 118 (140)
T 3q90_A 92 VVQVMGLLSNNNQALRRFMQTFVLAPE 118 (140)
T ss_dssp EEEEEEEEECTTCCCEEEEEEEEEEEC
T ss_pred EEEEEEEEecCCCCccEEEEEEEEeec
Confidence 566778888888899999999999864
No 25
>3ujm_A Rasputin; NTF2-like fold, RAS signaling, signaling protein; HET: EPE; 2.74A {Drosophila melanogaster}
Probab=52.20 E-value=8.4 Score=29.48 Aligned_cols=27 Identities=37% Similarity=0.744 Sum_probs=23.0
Q ss_pred eEEEeccceecCcceeeeecceEEeee
Q 026764 117 LLLVTGPFKVNGVPLRRVNQSYVIATS 143 (233)
Q Consensus 117 lLLVTGP~~lNgvPlrRv~q~yVIaTS 143 (233)
|++|+|=+..++-|.|+.+|-|+++-.
T Consensus 79 li~V~G~l~~~~~~~r~F~QtF~L~p~ 105 (120)
T 3ujm_A 79 VVQVTGELSNDGQPMRRFTQTFVLAAQ 105 (120)
T ss_dssp EEEEEEEEESTTCCCEEEEEEEEEEEC
T ss_pred EEEEEEEEEeCCCCCceEEEEEEEEEc
Confidence 567888888888899999999999853
No 26
>3nv0_B NTF2-related export protein; NTF2-like domain, beta sheet heterodimer interface, nucleopo binding pocket, water mediated interface; 1.84A {Caenorhabditis elegans}
Probab=37.64 E-value=20 Score=28.93 Aligned_cols=26 Identities=31% Similarity=0.484 Sum_probs=21.3
Q ss_pred eEEEeccceecCcceeeeecceEEee
Q 026764 117 LLLVTGPFKVNGVPLRRVNQSYVIAT 142 (233)
Q Consensus 117 lLLVTGP~~lNgvPlrRv~q~yVIaT 142 (233)
++.|+|=+++++-|.|+.+|-||++-
T Consensus 113 lI~V~G~l~~~~~~~r~F~QtFvL~p 138 (154)
T 3nv0_B 113 LLNVAGAVTVDGDSKRAFTQTLLLGV 138 (154)
T ss_dssp EEEEEEEEEETTSCCEEEEEEEEEEE
T ss_pred EEEEEEEEEECCCCceeEEEEEEEEE
Confidence 45677777778888999999999884
No 27
>1zo2_A NTF2, nuclear transport factor 2; structural genomics, structural genomics consortium, SGC, transport protein; 1.60A {Cryptosporidium parvum} SCOP: d.17.4.2
Probab=35.64 E-value=24 Score=27.31 Aligned_cols=26 Identities=19% Similarity=0.367 Sum_probs=18.6
Q ss_pred EEEeccceecCcceeeeecceEEeee
Q 026764 118 LLVTGPFKVNGVPLRRVNQSYVIATS 143 (233)
Q Consensus 118 LLVTGP~~lNgvPlrRv~q~yVIaTS 143 (233)
+.|+|=+..++-|.|+.+|-||++-.
T Consensus 87 I~V~G~~~~~~~~~~~F~qtF~L~p~ 112 (129)
T 1zo2_A 87 VFVTGDVRIDDGQPLKFSQVFNLMPS 112 (129)
T ss_dssp EEEEEEEEETTCCCEEEEEEEEEEEC
T ss_pred EEEEEEEEECCCCcceEEEEEEEEEc
Confidence 34455555556689999999999864
No 28
>1gy6_A Nuclear transport factor 2; 1.6A {Rattus norvegicus} SCOP: d.17.4.2 PDB: 1a2k_A 1oun_A 1ar0_A 1u5o_A 1ask_A 1gy5_A 1jb5_A 1jb4_A 1jb2_A 1qma_A
Probab=33.78 E-value=26 Score=26.88 Aligned_cols=25 Identities=20% Similarity=0.464 Sum_probs=17.4
Q ss_pred EEeccceecCcceeeeecceEEeee
Q 026764 119 LVTGPFKVNGVPLRRVNQSYVIATS 143 (233)
Q Consensus 119 LVTGP~~lNgvPlrRv~q~yVIaTS 143 (233)
.|+|=+..++-|.|+.+|-|+++-.
T Consensus 84 ~V~G~~~~~~~~~~~F~qtF~L~p~ 108 (127)
T 1gy6_A 84 MVVGQLKADEDPIMGFHQMFLLKNI 108 (127)
T ss_dssp EEEEEEEETTSCCEEEEEEEEEEEE
T ss_pred EEEEEEEECCCCcceEeEEEEEEEe
Confidence 3444444445588999999999853
No 29
>2qiy_A UBP3-associated protein BRE5; deubiquitylation, ubiquitin-specific processing proteases(UB NTF2, protein-protein recognition; 1.69A {Saccharomyces cerevisiae} SCOP: d.17.4.2 PDB: 1zx2_A
Probab=33.48 E-value=26 Score=27.76 Aligned_cols=27 Identities=26% Similarity=0.568 Sum_probs=21.6
Q ss_pred eEEEeccceecCcceeeeecceEEeee
Q 026764 117 LLLVTGPFKVNGVPLRRVNQSYVIATS 143 (233)
Q Consensus 117 lLLVTGP~~lNgvPlrRv~q~yVIaTS 143 (233)
++.|+|=+..++-|.|+.+|-||++-.
T Consensus 105 lI~V~G~~~~~~~~~r~F~qtFvL~p~ 131 (154)
T 2qiy_A 105 LIMATGEMFWTGTPVYKFCQTFILLPS 131 (154)
T ss_dssp EEEEEEEEEETTCCCEEEEEEEEEEEC
T ss_pred EEEEEEEEEECCCCCceEEEEEEEEEe
Confidence 455777777777799999999999864
No 30
>2rm4_A CG6311-PB, DM EDC3; enhancer of mRNA decapping, P-BODY component, SM-like protein,, protein binding; NMR {Drosophila melanogaster}
Probab=32.65 E-value=15 Score=28.63 Aligned_cols=46 Identities=39% Similarity=0.685 Sum_probs=31.9
Q ss_pred ceecCceEEEEeeccCceEEEeccceecCcceeeeecceEEeeeeeEecCCccc
Q 026764 100 GRFMGKRVVFLKQLTSGLLLVTGPFKVNGVPLRRVNQSYVIATSTKVDISGVDL 153 (233)
Q Consensus 100 Gr~~GKRvVfLKqL~sglLLVTGP~~lNgvPlrRv~q~yVIaTSTkvdis~vki 153 (233)
|-|+|. +++++..-+-++-|| =|||||+..+..-++.. .||..++|
T Consensus 24 GVyQG~----I~~V~~~~ItL~kaF-rNGiplk~~~~EVtLsa---~DI~~L~I 69 (103)
T 2rm4_A 24 GVFQGL----IKQISAEEITIVRAF-RNGVPLRKQNAEVVLKC---TDIRSIDL 69 (103)
T ss_dssp CEEEEE----EEEEETTEEEEEEEE-ETTEECSCSSSCEEEET---TTEEEEEE
T ss_pred eEeeEE----EEEcccceeEEhhhh-hcCcCcCCCCceEEEEe---cchhheee
Confidence 567773 566665558888999 59999999887655542 36666555
No 31
>1jkg_A P15; NTF2-like domain, transport protein; 1.90A {Homo sapiens} SCOP: d.17.4.2 PDB: 1jn5_A
Probab=32.46 E-value=28 Score=27.11 Aligned_cols=25 Identities=24% Similarity=0.585 Sum_probs=18.5
Q ss_pred EEEeccceecCcceeeeecceEEee
Q 026764 118 LLVTGPFKVNGVPLRRVNQSYVIAT 142 (233)
Q Consensus 118 LLVTGP~~lNgvPlrRv~q~yVIaT 142 (233)
+.|+|=+.+++-|.|+.+|-|+++-
T Consensus 93 I~V~G~~~~~~~~~r~F~qtF~L~p 117 (140)
T 1jkg_A 93 VVICGSVKFEGNKQRDFNQNFILTA 117 (140)
T ss_dssp EEEEEEEEETTSCCEEEEEEEEEEE
T ss_pred EEEEEEEEECCCCceeeeEEEEEEe
Confidence 3445555566668999999999985
No 32
>1dgw_Y Canavalin; duplicated swiss-roll beta barrels, loops with alpha helices merohedral/ hemihedral twinning, plant protein; 1.70A {Canavalia ensiformis} SCOP: b.82.1.2 PDB: 1dgr_Y
Probab=29.42 E-value=39 Score=25.39 Aligned_cols=48 Identities=27% Similarity=0.391 Sum_probs=31.4
Q ss_pred cccccccccCCcEEEEecceecCceEEEEeeccCceEEEeccceecCcceeeeecceEEe
Q 026764 82 PTKLRASITPGTVFILLAGRFMGKRVVFLKQLTSGLLLVTGPFKVNGVPLRRVNQSYVIA 141 (233)
Q Consensus 82 ~~klR~SitpGtvlIlL~Gr~~GKRvVfLKqL~sglLLVTGP~~lNgvPlrRv~q~yVIa 141 (233)
.++++..+.+|+|+||-+|. +|..+.- ++|-+| | |++|. +-|++..+|
T Consensus 3 ~~~~~~~l~~G~v~vVPq~~-----~v~~~A~-~~le~v-~-F~tna----~~~~~~~LA 50 (93)
T 1dgw_Y 3 LRRYAATLSEGDIIVIPSSF-----PVALKAA-SDLNMV-G-IGVNA----ENNERNFLA 50 (93)
T ss_dssp EEEEEEEECTTCEEEECTTC-----CEEEEES-SSEEEE-E-EEESC----TTCCEEESS
T ss_pred cchhhceecCCcEEEECCCC-----ceeEEec-CCeEEE-E-EEecC----CCCeeeecc
Confidence 45678889999999999996 4444444 565544 3 55665 225555555
No 33
>1gy7_A Nuclear transport factor 2; protein transport; 1.6A {Saccharomyces cerevisiae} SCOP: d.17.4.2 PDB: 1gyb_A
Probab=28.63 E-value=36 Score=26.00 Aligned_cols=24 Identities=17% Similarity=0.386 Sum_probs=16.7
Q ss_pred EEeccceecCc-ceeeeecceEEee
Q 026764 119 LVTGPFKVNGV-PLRRVNQSYVIAT 142 (233)
Q Consensus 119 LVTGP~~lNgv-PlrRv~q~yVIaT 142 (233)
.|+|=+..++- |.|+.+|-|+++-
T Consensus 83 ~V~G~~~~~~~~~~~~F~qtF~L~p 107 (125)
T 1gy7_A 83 MITGDLLIDEEQNPQRFSQVFHLIP 107 (125)
T ss_dssp EEEEEEEETTCSSCEEEEEEEEEEE
T ss_pred EEEEEEEECCCCCCccEeEEEEEEE
Confidence 34444444554 8899999999975
No 34
>2e6z_A Transcription elongation factor SPT5; KOW motif, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=27.74 E-value=34 Score=23.25 Aligned_cols=26 Identities=15% Similarity=0.285 Sum_probs=22.8
Q ss_pred ccccCCcEEEEecceecCceEEEEee
Q 026764 87 ASITPGTVFILLAGRFMGKRVVFLKQ 112 (233)
Q Consensus 87 ~SitpGtvlIlL~Gr~~GKRvVfLKq 112 (233)
.++.||+.+-|..|.|+|-..++..-
T Consensus 6 ~~f~~GD~V~V~~Gpf~g~~G~V~ev 31 (59)
T 2e6z_A 6 SGFQPGDNVEVCEGELINLQGKILSV 31 (59)
T ss_dssp SSCCTTSEEEECSSTTTTCEEEECCC
T ss_pred ccCCCCCEEEEeecCCCCCEEEEEEE
Confidence 45789999999999999999888764
No 35
>2ckk_A KIN17; beta barrel, ribosomal protein, ribonucleoprotein, nuclear protein; 1.45A {Homo sapiens}
Probab=20.76 E-value=51 Score=25.88 Aligned_cols=23 Identities=22% Similarity=0.429 Sum_probs=19.3
Q ss_pred CCcEEEEecceecCceEEEEeec
Q 026764 91 PGTVFILLAGRFMGKRVVFLKQL 113 (233)
Q Consensus 91 pGtvlIlL~Gr~~GKRvVfLKqL 113 (233)
+|.-+.|+.|.|||....++.--
T Consensus 73 ~g~~V~Iv~G~~rG~~g~L~~id 95 (127)
T 2ckk_A 73 PGKRILVLNGGYRGNEGTLESIN 95 (127)
T ss_dssp TTCEEEECSSTTTTCEEEEEEEE
T ss_pred CCCEEEEEecccCCcEEEEEEEe
Confidence 58888888899999999888753
No 36
>1nz9_A Transcription antitermination protein NUSG; transcription elongation, riken structural genomics/proteomics initiative, RSGI; NMR {Thermus thermophilus} SCOP: b.34.5.4
Probab=20.72 E-value=1.4e+02 Score=19.58 Aligned_cols=33 Identities=15% Similarity=0.170 Sum_probs=26.2
Q ss_pred cccCCcEEEEecceecCceEEEEeec-cCceEEE
Q 026764 88 SITPGTVFILLAGRFMGKRVVFLKQL-TSGLLLV 120 (233)
Q Consensus 88 SitpGtvlIlL~Gr~~GKRvVfLKqL-~sglLLV 120 (233)
.+.+|+.+-+..|.|+|-...+.+.- +.+-+.|
T Consensus 4 ~~~~Gd~V~V~~Gpf~g~~g~v~~v~~~k~~v~V 37 (58)
T 1nz9_A 4 AFREGDQVRVVSGPFADFTGTVTEINPERGKVKV 37 (58)
T ss_dssp SCCTTCEEEECSGGGTTCEEEEEEEETTTTEEEE
T ss_pred ccCCCCEEEEeecCCCCcEEEEEEEcCCCCEEEE
Confidence 56799999999999999999888863 3455544
Done!