BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 026765
(233 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 311
Score = 81.3 bits (199), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 64/237 (27%), Positives = 112/237 (47%), Gaps = 22/237 (9%)
Query: 5 SIPFKNLHSREYT--GHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIEL 62
S P K ++ ++T GH K V SV ++ G LAS S D+ ++W GK + +
Sbjct: 5 STPVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAY---DGKFEK-TI 60
Query: 63 RGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINI---TYKPD 119
GH + + W ++L+ +AS DKT+++WD SGKC + L G + + + P
Sbjct: 61 SGHKLGISDVAWS-SDSNLLVSASDDKTLKIWDVSSGKCLKT--LKGHSNYVFCCNFNPQ 117
Query: 120 GTHIAVGNRDDELTILDVRKFK-----PIHRRKFGYEVNEIAWNMTGEMFFLTTGNGTVE 174
I G+ D+ + I DV+ K P H V+ + +N G + ++ +G
Sbjct: 118 SNLIVSGSFDESVRIWDVKTGKCLKTLPAHSD----PVSAVHFNRDGSLIVSSSYDGLCR 173
Query: 175 VLTYPSLRPLDTVV-AHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFT 230
+ S + L T++ + P G+Y + D+ + LWD S+ C++T+T
Sbjct: 174 IWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYT 230
Score = 72.8 bits (177), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 53/213 (24%), Positives = 102/213 (47%), Gaps = 11/213 (5%)
Query: 14 REYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLC 73
+ +GHK + VAW+ L S S D+T ++W + K L+GH++ V
Sbjct: 58 KTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKT----LKGHSNYVFCCN 113
Query: 74 WDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENIN-ITYKPDGTHIAVGNRDDEL 132
++P+ ++LI + S D++VR+WD ++GKC + + ++ + + DG+ I + D
Sbjct: 114 FNPQ-SNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLC 172
Query: 133 TILDVRKFKPIHR--RKFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAH 190
I D + + V+ + ++ G+ T + T+++ Y + L T H
Sbjct: 173 RIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGH 232
Query: 191 TAGCYCIAID---PMGRYFAVGSADSLVSLWDI 220
YCI + G++ GS D+LV +W++
Sbjct: 233 KNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNL 265
>pdb|2GNQ|A Chain A, Structure Of Wdr5
Length = 336
Score = 80.5 bits (197), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 63/235 (26%), Positives = 111/235 (47%), Gaps = 22/235 (9%)
Query: 7 PFKNLHSREYT--GHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRG 64
P K ++ ++T GH K V SV ++ G LAS S D+ ++W GK + + G
Sbjct: 32 PVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAY---DGKFEKT-ISG 87
Query: 65 HADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINI---TYKPDGT 121
H + + W ++L+ +AS DKT+++WD SGKC + L G + + + P
Sbjct: 88 HKLGISDVAWS-SDSNLLVSASDDKTLKIWDVSSGKCLKT--LKGHSNYVFCCNFNPQSN 144
Query: 122 HIAVGNRDDELTILDVRKFK-----PIHRRKFGYEVNEIAWNMTGEMFFLTTGNGTVEVL 176
I G+ D+ + I DV+ K P H V+ + +N G + ++ +G +
Sbjct: 145 LIVSGSFDESVRIWDVKTGKCLKTLPAHSD----PVSAVHFNRDGSLIVSSSYDGLCRIW 200
Query: 177 TYPSLRPLDTVV-AHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFT 230
S + L T++ + P G+Y + D+ + LWD S+ C++T+T
Sbjct: 201 DTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYT 255
Score = 72.4 bits (176), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 54/213 (25%), Positives = 103/213 (48%), Gaps = 11/213 (5%)
Query: 14 REYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLC 73
+ +GHK + VAW+ L S S D+T ++W + GK L+GH++ V
Sbjct: 83 KTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVS---SGKCLKT-LKGHSNYVFCCN 138
Query: 74 WDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENIN-ITYKPDGTHIAVGNRDDEL 132
++P+ ++LI + S D++VR+WD ++GKC + + ++ + + DG+ I + D
Sbjct: 139 FNPQ-SNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLC 197
Query: 133 TILDVRKFKPIHR--RKFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAH 190
I D + + V+ + ++ G+ T + T+++ Y + L T H
Sbjct: 198 RIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGH 257
Query: 191 TAGCYCIAID---PMGRYFAVGSADSLVSLWDI 220
YCI + G++ GS D+LV +W++
Sbjct: 258 KNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNL 290
>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction
Length = 318
Score = 80.5 bits (197), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 63/235 (26%), Positives = 111/235 (47%), Gaps = 22/235 (9%)
Query: 7 PFKNLHSREYT--GHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRG 64
P K ++ ++T GH K V SV ++ G LAS S D+ ++W GK + + G
Sbjct: 14 PVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAY---DGKFEKT-ISG 69
Query: 65 HADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINI---TYKPDGT 121
H + + W ++L+ +AS DKT+++WD SGKC + L G + + + P
Sbjct: 70 HKLGISDVAWS-SDSNLLVSASDDKTLKIWDVSSGKCLKT--LKGHSNYVFCCNFNPQSN 126
Query: 122 HIAVGNRDDELTILDVRKFK-----PIHRRKFGYEVNEIAWNMTGEMFFLTTGNGTVEVL 176
I G+ D+ + I DV+ K P H V+ + +N G + ++ +G +
Sbjct: 127 LIVSGSFDESVRIWDVKTGKCLKTLPAHSD----PVSAVHFNRDGSLIVSSSYDGLCRIW 182
Query: 177 TYPSLRPLDTVV-AHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFT 230
S + L T++ + P G+Y + D+ + LWD S+ C++T+T
Sbjct: 183 DTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYT 237
Score = 72.8 bits (177), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 53/213 (24%), Positives = 102/213 (47%), Gaps = 11/213 (5%)
Query: 14 REYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLC 73
+ +GHK + VAW+ L S S D+T ++W + K L+GH++ V
Sbjct: 65 KTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKT----LKGHSNYVFCCN 120
Query: 74 WDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENIN-ITYKPDGTHIAVGNRDDEL 132
++P+ ++LI + S D++VR+WD ++GKC + + ++ + + DG+ I + D
Sbjct: 121 FNPQ-SNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLC 179
Query: 133 TILDVRKFKPIHR--RKFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAH 190
I D + + V+ + ++ G+ T + T+++ Y + L T H
Sbjct: 180 RIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGH 239
Query: 191 TAGCYCIAID---PMGRYFAVGSADSLVSLWDI 220
YCI + G++ GS D+LV +W++
Sbjct: 240 KNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNL 272
>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL2|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL3|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
pdb|2XL3|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
Length = 334
Score = 80.5 bits (197), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 63/235 (26%), Positives = 111/235 (47%), Gaps = 22/235 (9%)
Query: 7 PFKNLHSREYT--GHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRG 64
P K ++ ++T GH K V SV ++ G LAS S D+ ++W GK + + G
Sbjct: 30 PVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAY---DGKFEKT-ISG 85
Query: 65 HADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINI---TYKPDGT 121
H + + W ++L+ +AS DKT+++WD SGKC + L G + + + P
Sbjct: 86 HKLGISDVAWS-SDSNLLVSASDDKTLKIWDVSSGKCLKT--LKGHSNYVFCCNFNPQSN 142
Query: 122 HIAVGNRDDELTILDVRKFK-----PIHRRKFGYEVNEIAWNMTGEMFFLTTGNGTVEVL 176
I G+ D+ + I DV+ K P H V+ + +N G + ++ +G +
Sbjct: 143 LIVSGSFDESVRIWDVKTGKCLKTLPAHSD----PVSAVHFNRDGSLIVSSSYDGLCRIW 198
Query: 177 TYPSLRPLDTVV-AHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFT 230
S + L T++ + P G+Y + D+ + LWD S+ C++T+T
Sbjct: 199 DTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYT 253
Score = 72.4 bits (176), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 53/213 (24%), Positives = 102/213 (47%), Gaps = 11/213 (5%)
Query: 14 REYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLC 73
+ +GHK + VAW+ L S S D+T ++W + K L+GH++ V
Sbjct: 81 KTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKT----LKGHSNYVFCCN 136
Query: 74 WDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENIN-ITYKPDGTHIAVGNRDDEL 132
++P+ ++LI + S D++VR+WD ++GKC + + ++ + + DG+ I + D
Sbjct: 137 FNPQ-SNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLC 195
Query: 133 TILDVRKFKPIHR--RKFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAH 190
I D + + V+ + ++ G+ T + T+++ Y + L T H
Sbjct: 196 RIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGH 255
Query: 191 TAGCYCIAID---PMGRYFAVGSADSLVSLWDI 220
YCI + G++ GS D+LV +W++
Sbjct: 256 KNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNL 288
>pdb|2H9L|A Chain A, Wdr5delta23
pdb|2H9P|A Chain A, Wdr5 In Complex With Trimethylated H3k4 Peptide
Length = 329
Score = 80.5 bits (197), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 63/235 (26%), Positives = 111/235 (47%), Gaps = 22/235 (9%)
Query: 7 PFKNLHSREYT--GHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRG 64
P K ++ ++T GH K V SV ++ G LAS S D+ ++W GK + + G
Sbjct: 25 PVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAY---DGKFEKT-ISG 80
Query: 65 HADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINI---TYKPDGT 121
H + + W ++L+ +AS DKT+++WD SGKC + L G + + + P
Sbjct: 81 HKLGISDVAWS-SDSNLLVSASDDKTLKIWDVSSGKCLKT--LKGHSNYVFCCNFNPQSN 137
Query: 122 HIAVGNRDDELTILDVRKFK-----PIHRRKFGYEVNEIAWNMTGEMFFLTTGNGTVEVL 176
I G+ D+ + I DV+ K P H V+ + +N G + ++ +G +
Sbjct: 138 LIVSGSFDESVRIWDVKTGKCLKTLPAHSD----PVSAVHFNRDGSLIVSSSYDGLCRIW 193
Query: 177 TYPSLRPLDTVV-AHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFT 230
S + L T++ + P G+Y + D+ + LWD S+ C++T+T
Sbjct: 194 DTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYT 248
Score = 72.8 bits (177), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 53/213 (24%), Positives = 102/213 (47%), Gaps = 11/213 (5%)
Query: 14 REYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLC 73
+ +GHK + VAW+ L S S D+T ++W + K L+GH++ V
Sbjct: 76 KTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKT----LKGHSNYVFCCN 131
Query: 74 WDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENIN-ITYKPDGTHIAVGNRDDEL 132
++P+ ++LI + S D++VR+WD ++GKC + + ++ + + DG+ I + D
Sbjct: 132 FNPQ-SNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLC 190
Query: 133 TILDVRKFKPIHR--RKFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAH 190
I D + + V+ + ++ G+ T + T+++ Y + L T H
Sbjct: 191 RIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGH 250
Query: 191 TAGCYCIAID---PMGRYFAVGSADSLVSLWDI 220
YCI + G++ GS D+LV +W++
Sbjct: 251 KNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNL 283
>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y)
Length = 315
Score = 80.5 bits (197), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 64/241 (26%), Positives = 111/241 (46%), Gaps = 22/241 (9%)
Query: 1 MGESSIPFKNLHSREYT--GHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVK 58
MG S K ++ ++T GH K V SV ++ G LAS S D+ ++W K
Sbjct: 5 MGRGSEFVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKT- 63
Query: 59 DIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINI---T 115
+ GH + + W ++L+ +AS DKT+++WD SGKC + L G + +
Sbjct: 64 ---ISGHKLGISDVAWSS-DSNLLVSASDDKTLKIWDVSSGKCLKT--LKGHSNYVFCCN 117
Query: 116 YKPDGTHIAVGNRDDELTILDVRKFK-----PIHRRKFGYEVNEIAWNMTGEMFFLTTGN 170
+ P I G+ D+ + I DV+ K P H V+ + +N G + ++ +
Sbjct: 118 FNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSD----PVSAVHFNRDGSLIVSSSYD 173
Query: 171 GTVEVLTYPSLRPLDTVV-AHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTF 229
G + S + L T++ + P G+Y + D+ + LWD S+ C++T+
Sbjct: 174 GLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTY 233
Query: 230 T 230
T
Sbjct: 234 T 234
Score = 72.8 bits (177), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 53/213 (24%), Positives = 102/213 (47%), Gaps = 11/213 (5%)
Query: 14 REYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLC 73
+ +GHK + VAW+ L S S D+T ++W + K L+GH++ V
Sbjct: 62 KTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKT----LKGHSNYVFCCN 117
Query: 74 WDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENIN-ITYKPDGTHIAVGNRDDEL 132
++P+ ++LI + S D++VR+WD ++GKC + + ++ + + DG+ I + D
Sbjct: 118 FNPQ-SNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLC 176
Query: 133 TILDVRKFKPIHR--RKFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAH 190
I D + + V+ + ++ G+ T + T+++ Y + L T H
Sbjct: 177 RIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGH 236
Query: 191 TAGCYCIAID---PMGRYFAVGSADSLVSLWDI 220
YCI + G++ GS D+LV +W++
Sbjct: 237 KNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNL 269
>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f)
Length = 315
Score = 80.5 bits (197), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 64/241 (26%), Positives = 111/241 (46%), Gaps = 22/241 (9%)
Query: 1 MGESSIPFKNLHSREYT--GHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVK 58
MG S K ++ ++T GH K V SV ++ G LAS S D+ ++W K
Sbjct: 5 MGRGSEFVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKT- 63
Query: 59 DIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINI---T 115
+ GH + + W ++L+ +AS DKT+++WD SGKC + L G + +
Sbjct: 64 ---ISGHKLGISDVAWSS-DSNLLVSASDDKTLKIWDVSSGKCLKT--LKGHSNYVFCCN 117
Query: 116 YKPDGTHIAVGNRDDELTILDVRKFK-----PIHRRKFGYEVNEIAWNMTGEMFFLTTGN 170
+ P I G+ D+ + I DV+ K P H V+ + +N G + ++ +
Sbjct: 118 FNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSD----PVSAVHFNRDGSLIVSSSYD 173
Query: 171 GTVEVLTYPSLRPLDTVV-AHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTF 229
G + S + L T++ + P G+Y + D+ + LWD S+ C++T+
Sbjct: 174 GLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTY 233
Query: 230 T 230
T
Sbjct: 234 T 234
Score = 72.8 bits (177), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 53/213 (24%), Positives = 102/213 (47%), Gaps = 11/213 (5%)
Query: 14 REYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLC 73
+ +GHK + VAW+ L S S D+T ++W + K L+GH++ V
Sbjct: 62 KTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKT----LKGHSNYVFCCN 117
Query: 74 WDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENIN-ITYKPDGTHIAVGNRDDEL 132
++P+ ++LI + S D++VR+WD ++GKC + + ++ + + DG+ I + D
Sbjct: 118 FNPQ-SNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLC 176
Query: 133 TILDVRKFKPIHR--RKFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAH 190
I D + + V+ + ++ G+ T + T+++ Y + L T H
Sbjct: 177 RIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGH 236
Query: 191 TAGCYCIAID---PMGRYFAVGSADSLVSLWDI 220
YCI + G++ GS D+LV +W++
Sbjct: 237 KNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNL 269
>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3PSL|B Chain B, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3UVK|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll2
pdb|3UVL|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll3
pdb|3UVM|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll4
pdb|3UVN|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVN|C Chain C, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVO|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1b
Length = 318
Score = 80.1 bits (196), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 63/235 (26%), Positives = 111/235 (47%), Gaps = 22/235 (9%)
Query: 7 PFKNLHSREYT--GHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRG 64
P K ++ ++T GH K V SV ++ G LAS S D+ ++W GK + + G
Sbjct: 14 PVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAY---DGKFEK-TISG 69
Query: 65 HADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINI---TYKPDGT 121
H + + W ++L+ +AS DKT+++WD SGKC + L G + + + P
Sbjct: 70 HKLGISDVAWS-SDSNLLVSASDDKTLKIWDVSSGKCLKT--LKGHSNYVFCCNFNPQSN 126
Query: 122 HIAVGNRDDELTILDVRKFK-----PIHRRKFGYEVNEIAWNMTGEMFFLTTGNGTVEVL 176
I G+ D+ + I DV+ K P H V+ + +N G + ++ +G +
Sbjct: 127 LIVSGSFDESVRIWDVKTGKCLKTLPAHSD----PVSAVHFNRDGSLIVSSSYDGLCRIW 182
Query: 177 TYPSLRPLDTVV-AHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFT 230
S + L T++ + P G+Y + D+ + LWD S+ C++T+T
Sbjct: 183 DTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYT 237
Score = 72.4 bits (176), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 53/213 (24%), Positives = 102/213 (47%), Gaps = 11/213 (5%)
Query: 14 REYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLC 73
+ +GHK + VAW+ L S S D+T ++W + K L+GH++ V
Sbjct: 65 KTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKT----LKGHSNYVFCCN 120
Query: 74 WDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENIN-ITYKPDGTHIAVGNRDDEL 132
++P+ ++LI + S D++VR+WD ++GKC + + ++ + + DG+ I + D
Sbjct: 121 FNPQ-SNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLC 179
Query: 133 TILDVRKFKPIHR--RKFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAH 190
I D + + V+ + ++ G+ T + T+++ Y + L T H
Sbjct: 180 RIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGH 239
Query: 191 TAGCYCIAID---PMGRYFAVGSADSLVSLWDI 220
YCI + G++ GS D+LV +W++
Sbjct: 240 KNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNL 272
>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX
pdb|2H14|A Chain A, Crystal Of Wdr5 (Apo-Form)
pdb|3P4F|A Chain A, Structural And Biochemical Insights Into Mll1 Core Complex
Assembly And Regulation
Length = 317
Score = 80.1 bits (196), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 63/235 (26%), Positives = 111/235 (47%), Gaps = 22/235 (9%)
Query: 7 PFKNLHSREYT--GHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRG 64
P K ++ ++T GH K V SV ++ G LAS S D+ ++W GK + + G
Sbjct: 13 PVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAY---DGKFEK-TISG 68
Query: 65 HADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINI---TYKPDGT 121
H + + W ++L+ +AS DKT+++WD SGKC + L G + + + P
Sbjct: 69 HKLGISDVAWS-SDSNLLVSASDDKTLKIWDVSSGKCLKT--LKGHSNYVFCCNFNPQSN 125
Query: 122 HIAVGNRDDELTILDVRKFK-----PIHRRKFGYEVNEIAWNMTGEMFFLTTGNGTVEVL 176
I G+ D+ + I DV+ K P H V+ + +N G + ++ +G +
Sbjct: 126 LIVSGSFDESVRIWDVKTGKCLKTLPAHSD----PVSAVHFNRDGSLIVSSSYDGLCRIW 181
Query: 177 TYPSLRPLDTVV-AHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFT 230
S + L T++ + P G+Y + D+ + LWD S+ C++T+T
Sbjct: 182 DTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYT 236
Score = 72.4 bits (176), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 53/213 (24%), Positives = 102/213 (47%), Gaps = 11/213 (5%)
Query: 14 REYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLC 73
+ +GHK + VAW+ L S S D+T ++W + K L+GH++ V
Sbjct: 64 KTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKT----LKGHSNYVFCCN 119
Query: 74 WDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENIN-ITYKPDGTHIAVGNRDDEL 132
++P+ ++LI + S D++VR+WD ++GKC + + ++ + + DG+ I + D
Sbjct: 120 FNPQ-SNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLC 178
Query: 133 TILDVRKFKPIHR--RKFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAH 190
I D + + V+ + ++ G+ T + T+++ Y + L T H
Sbjct: 179 RIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGH 238
Query: 191 TAGCYCIAID---PMGRYFAVGSADSLVSLWDI 220
YCI + G++ GS D+LV +W++
Sbjct: 239 KNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNL 271
>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel
Histone Mark That Supports Euchromatin Maintenance
Length = 318
Score = 80.1 bits (196), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 63/235 (26%), Positives = 111/235 (47%), Gaps = 22/235 (9%)
Query: 7 PFKNLHSREYT--GHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRG 64
P K ++ ++T GH K V SV ++ G LAS S D+ ++W GK + + G
Sbjct: 14 PVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAY---DGKFEK-TISG 69
Query: 65 HADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINI---TYKPDGT 121
H + + W ++L+ +AS DKT+++WD SGKC + L G + + + P
Sbjct: 70 HKLGISDVAWS-SDSNLLVSASDDKTLKIWDVSSGKCLKT--LKGHSNYVFCCNFNPQSN 126
Query: 122 HIAVGNRDDELTILDVRKFK-----PIHRRKFGYEVNEIAWNMTGEMFFLTTGNGTVEVL 176
I G+ D+ + I DV+ K P H V+ + +N G + ++ +G +
Sbjct: 127 LIVSGSFDESVRIWDVKTGKCLKTLPAHSD----PVSAVHFNRDGSLIVSSSYDGLCRIW 182
Query: 177 TYPSLRPLDTVV-AHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFT 230
S + L T++ + P G+Y + D+ + LWD S+ C++T+T
Sbjct: 183 DTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYT 237
Score = 72.4 bits (176), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 53/213 (24%), Positives = 102/213 (47%), Gaps = 11/213 (5%)
Query: 14 REYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLC 73
+ +GHK + VAW+ L S S D+T ++W + K L+GH++ V
Sbjct: 65 KTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKT----LKGHSNYVFCCN 120
Query: 74 WDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENIN-ITYKPDGTHIAVGNRDDEL 132
++P+ ++LI + S D++VR+WD ++GKC + + ++ + + DG+ I + D
Sbjct: 121 FNPQ-SNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLC 179
Query: 133 TILDVRKFKPIHR--RKFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAH 190
I D + + V+ + ++ G+ T + T+++ Y + L T H
Sbjct: 180 RIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGH 239
Query: 191 TAGCYCIAID---PMGRYFAVGSADSLVSLWDI 220
YCI + G++ GS D+LV +W++
Sbjct: 240 KNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNL 272
>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|C Chain C, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|D Chain D, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|4IA9|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 In Complex
With 2-
Chloro-4-Fluoro-3-Methyl-N-[2-(4-Methylpiperazin-1-Yl)-
5- Nitrophenyl]benzamide
Length = 312
Score = 80.1 bits (196), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 63/235 (26%), Positives = 111/235 (47%), Gaps = 22/235 (9%)
Query: 7 PFKNLHSREYT--GHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRG 64
P K ++ ++T GH K V SV ++ G LAS S D+ ++W GK + + G
Sbjct: 8 PVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAY---DGKFEK-TISG 63
Query: 65 HADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINI---TYKPDGT 121
H + + W ++L+ +AS DKT+++WD SGKC + L G + + + P
Sbjct: 64 HKLGISDVAWS-SDSNLLVSASDDKTLKIWDVSSGKCLKT--LKGHSNYVFCCNFNPQSN 120
Query: 122 HIAVGNRDDELTILDVRKFK-----PIHRRKFGYEVNEIAWNMTGEMFFLTTGNGTVEVL 176
I G+ D+ + I DV+ K P H V+ + +N G + ++ +G +
Sbjct: 121 LIVSGSFDESVRIWDVKTGKCLKTLPAHSD----PVSAVHFNRDGSLIVSSSYDGLCRIW 176
Query: 177 TYPSLRPLDTVV-AHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFT 230
S + L T++ + P G+Y + D+ + LWD S+ C++T+T
Sbjct: 177 DTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYT 231
Score = 72.8 bits (177), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 53/213 (24%), Positives = 102/213 (47%), Gaps = 11/213 (5%)
Query: 14 REYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLC 73
+ +GHK + VAW+ L S S D+T ++W + K L+GH++ V
Sbjct: 59 KTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKT----LKGHSNYVFCCN 114
Query: 74 WDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENIN-ITYKPDGTHIAVGNRDDEL 132
++P+ ++LI + S D++VR+WD ++GKC + + ++ + + DG+ I + D
Sbjct: 115 FNPQ-SNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLC 173
Query: 133 TILDVRKFKPIHR--RKFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAH 190
I D + + V+ + ++ G+ T + T+++ Y + L T H
Sbjct: 174 RIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGH 233
Query: 191 TAGCYCIAID---PMGRYFAVGSADSLVSLWDI 220
YCI + G++ GS D+LV +W++
Sbjct: 234 KNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNL 266
>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9M|C Chain C, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9N|A Chain A, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2H9N|C Chain C, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2O9K|A Chain A, Wdr5 In Complex With Dimethylated H3k4 Peptide
pdb|2O9K|C Chain C, Wdr5 In Complex With Dimethylated H3k4 Peptide
Length = 313
Score = 80.1 bits (196), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 63/235 (26%), Positives = 111/235 (47%), Gaps = 22/235 (9%)
Query: 7 PFKNLHSREYT--GHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRG 64
P K ++ ++T GH K V SV ++ G LAS S D+ ++W GK + + G
Sbjct: 9 PVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAY---DGKFEK-TISG 64
Query: 65 HADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINI---TYKPDGT 121
H + + W ++L+ +AS DKT+++WD SGKC + L G + + + P
Sbjct: 65 HKLGISDVAWS-SDSNLLVSASDDKTLKIWDVSSGKCLKT--LKGHSNYVFCCNFNPQSN 121
Query: 122 HIAVGNRDDELTILDVRKFK-----PIHRRKFGYEVNEIAWNMTGEMFFLTTGNGTVEVL 176
I G+ D+ + I DV+ K P H V+ + +N G + ++ +G +
Sbjct: 122 LIVSGSFDESVRIWDVKTGKCLKTLPAHSD----PVSAVHFNRDGSLIVSSSYDGLCRIW 177
Query: 177 TYPSLRPLDTVV-AHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFT 230
S + L T++ + P G+Y + D+ + LWD S+ C++T+T
Sbjct: 178 DTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYT 232
Score = 72.8 bits (177), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 53/213 (24%), Positives = 102/213 (47%), Gaps = 11/213 (5%)
Query: 14 REYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLC 73
+ +GHK + VAW+ L S S D+T ++W + K L+GH++ V
Sbjct: 60 KTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKT----LKGHSNYVFCCN 115
Query: 74 WDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENIN-ITYKPDGTHIAVGNRDDEL 132
++P+ ++LI + S D++VR+WD ++GKC + + ++ + + DG+ I + D
Sbjct: 116 FNPQ-SNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLC 174
Query: 133 TILDVRKFKPIHR--RKFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAH 190
I D + + V+ + ++ G+ T + T+++ Y + L T H
Sbjct: 175 RIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGH 234
Query: 191 TAGCYCIAID---PMGRYFAVGSADSLVSLWDI 220
YCI + G++ GS D+LV +W++
Sbjct: 235 KNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNL 267
>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
pdb|2G99|B Chain B, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 308
Score = 80.1 bits (196), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 62/233 (26%), Positives = 109/233 (46%), Gaps = 18/233 (7%)
Query: 7 PFKNLHSREYT--GHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRG 64
P K ++ ++T GH K V SV ++ G LAS S D+ ++W GK + + G
Sbjct: 4 PVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAY---DGKFEK-TISG 59
Query: 65 HADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAE-LSGENINITYKPDGTHI 123
H + + W ++L+ +AS DKT+++WD SGKC + + S + P I
Sbjct: 60 HKLGISDVAWS-SDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYVFCCNFNPQSNLI 118
Query: 124 AVGNRDDELTILDVRKFK-----PIHRRKFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTY 178
G+ D+ + I DV+ K P H V+ + +N G + ++ +G +
Sbjct: 119 VSGSFDESVRIWDVKTGKCLKTLPAHSD----PVSAVHFNRDGSLIVSSSYDGLCRIWDT 174
Query: 179 PSLRPLDTVV-AHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFT 230
S + L T++ + P G+Y + D+ + LWD S+ C++T+T
Sbjct: 175 ASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYT 227
Score = 72.8 bits (177), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 53/213 (24%), Positives = 102/213 (47%), Gaps = 11/213 (5%)
Query: 14 REYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLC 73
+ +GHK + VAW+ L S S D+T ++W + K L+GH++ V
Sbjct: 55 KTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKT----LKGHSNYVFCCN 110
Query: 74 WDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENIN-ITYKPDGTHIAVGNRDDEL 132
++P+ ++LI + S D++VR+WD ++GKC + + ++ + + DG+ I + D
Sbjct: 111 FNPQ-SNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLC 169
Query: 133 TILDVRKFKPIHR--RKFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAH 190
I D + + V+ + ++ G+ T + T+++ Y + L T H
Sbjct: 170 RIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGH 229
Query: 191 TAGCYCIAID---PMGRYFAVGSADSLVSLWDI 220
YCI + G++ GS D+LV +W++
Sbjct: 230 KNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNL 262
>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H68|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|3EG6|A Chain A, Structure Of Wdr5 Bound To Mll1 Peptide
pdb|4ERQ|A Chain A, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|B Chain B, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|C Chain C, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERY|A Chain A, X-Ray Structure Of Wdr5-Mll3 Win Motif Peptide Binary
Complex
pdb|4ERZ|A Chain A, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|B Chain B, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|C Chain C, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ES0|A Chain A, X-Ray Structure Of Wdr5-Setd1b Win Motif Peptide Binary
Complex
pdb|4ESG|A Chain A, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4ESG|B Chain B, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4EWR|A Chain A, X-Ray Structure Of Wdr5-Setd1a Win Motif Peptide Binary
Complex
Length = 312
Score = 80.1 bits (196), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 63/235 (26%), Positives = 111/235 (47%), Gaps = 22/235 (9%)
Query: 7 PFKNLHSREYT--GHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRG 64
P K ++ ++T GH K V SV ++ G LAS S D+ ++W GK + + G
Sbjct: 8 PVKPNYALKFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAY---DGKFEK-TISG 63
Query: 65 HADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINI---TYKPDGT 121
H + + W ++L+ +AS DKT+++WD SGKC + L G + + + P
Sbjct: 64 HKLGISDVAWS-SDSNLLVSASDDKTLKIWDVSSGKCLKT--LKGHSNYVFCCNFNPQSN 120
Query: 122 HIAVGNRDDELTILDVRKFK-----PIHRRKFGYEVNEIAWNMTGEMFFLTTGNGTVEVL 176
I G+ D+ + I DV+ K P H V+ + +N G + ++ +G +
Sbjct: 121 LIVSGSFDESVRIWDVKTGKCLKTLPAHSD----PVSAVHFNRDGSLIVSSSYDGLCRIW 176
Query: 177 TYPSLRPLDTVV-AHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFT 230
S + L T++ + P G+Y + D+ + LWD S+ C++T+T
Sbjct: 177 DTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYT 231
Score = 72.8 bits (177), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 53/213 (24%), Positives = 102/213 (47%), Gaps = 11/213 (5%)
Query: 14 REYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLC 73
+ +GHK + VAW+ L S S D+T ++W + K L+GH++ V
Sbjct: 59 KTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKT----LKGHSNYVFCCN 114
Query: 74 WDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENIN-ITYKPDGTHIAVGNRDDEL 132
++P+ ++LI + S D++VR+WD ++GKC + + ++ + + DG+ I + D
Sbjct: 115 FNPQ-SNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLC 173
Query: 133 TILDVRKFKPIHR--RKFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAH 190
I D + + V+ + ++ G+ T + T+++ Y + L T H
Sbjct: 174 RIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGH 233
Query: 191 TAGCYCIAID---PMGRYFAVGSADSLVSLWDI 220
YCI + G++ GS D+LV +W++
Sbjct: 234 KNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNL 266
>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a)
Length = 315
Score = 79.3 bits (194), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 64/241 (26%), Positives = 113/241 (46%), Gaps = 22/241 (9%)
Query: 1 MGESSIPFKNLHSREYT--GHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVK 58
MG S K ++ ++T GH K V SV ++ G LA+ S D+ ++W GK +
Sbjct: 5 MGRGSEFVKPNYALKFTLAGHTKAVSSVKFSPNGEWLAASSADKLIKIWGAY---DGKFE 61
Query: 59 DIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINI---T 115
+ GH + + W ++L+ +AS DKT+++WD SGKC + L G + +
Sbjct: 62 KT-ISGHKLGISDVAWSS-DSNLLVSASDDKTLKIWDVSSGKCLKT--LKGHSNYVFCCN 117
Query: 116 YKPDGTHIAVGNRDDELTILDVRKFK-----PIHRRKFGYEVNEIAWNMTGEMFFLTTGN 170
+ P I G+ D+ + I DV+ K P H V+ + +N G + ++ +
Sbjct: 118 FNPQSNLIVSGSFDESVRIWDVKTGKCLKTLPAHSD----PVSAVHFNRDGSLIVSSSYD 173
Query: 171 GTVEVLTYPSLRPLDTVV-AHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTF 229
G + S + L T++ + P G+Y + D+ + LWD S+ C++T+
Sbjct: 174 GLCRIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTY 233
Query: 230 T 230
T
Sbjct: 234 T 234
Score = 72.8 bits (177), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 53/213 (24%), Positives = 102/213 (47%), Gaps = 11/213 (5%)
Query: 14 REYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLC 73
+ +GHK + VAW+ L S S D+T ++W + K L+GH++ V
Sbjct: 62 KTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKT----LKGHSNYVFCCN 117
Query: 74 WDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENIN-ITYKPDGTHIAVGNRDDEL 132
++P+ ++LI + S D++VR+WD ++GKC + + ++ + + DG+ I + D
Sbjct: 118 FNPQ-SNLIVSGSFDESVRIWDVKTGKCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLC 176
Query: 133 TILDVRKFKPIHR--RKFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAH 190
I D + + V+ + ++ G+ T + T+++ Y + L T H
Sbjct: 177 RIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGH 236
Query: 191 TAGCYCIAID---PMGRYFAVGSADSLVSLWDI 220
YCI + G++ GS D+LV +W++
Sbjct: 237 KNEKYCIFANFSVTGGKWIVSGSEDNLVYIWNL 269
>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1
Angstrom
pdb|2CO0|C Chain C, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 79.0 bits (193), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 63/235 (26%), Positives = 110/235 (46%), Gaps = 22/235 (9%)
Query: 7 PFKNLHSREYT--GHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRG 64
P K ++ +T GH K V SV ++ G LAS S D+ ++W GK + + G
Sbjct: 11 PVKPNYALMFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAY---DGKFEK-TISG 66
Query: 65 HADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINI---TYKPDGT 121
H + + W ++L+ +AS DKT+++WD SGKC + L G + + + P
Sbjct: 67 HKLGISDVAWS-SDSNLLVSASDDKTLKIWDVSSGKCLKT--LKGHSNYVFCCNFNPQSN 123
Query: 122 HIAVGNRDDELTILDVR-----KFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNGTVEVL 176
I G+ D+ + I DV+ K P H V+ + +N G + ++ +G +
Sbjct: 124 LIVSGSFDESVRIWDVKTGMCLKTLPAHSD----PVSAVHFNRDGSLIVSSSYDGLCRIW 179
Query: 177 TYPSLRPLDTVV-AHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFT 230
S + L T++ + P G+Y + D+ + LWD S+ C++T+T
Sbjct: 180 DTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYT 234
Score = 69.7 bits (169), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 51/213 (23%), Positives = 101/213 (47%), Gaps = 11/213 (5%)
Query: 14 REYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLC 73
+ +GHK + VAW+ L S S D+T ++W + K L+GH++ V
Sbjct: 62 KTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKT----LKGHSNYVFCCN 117
Query: 74 WDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENIN-ITYKPDGTHIAVGNRDDEL 132
++P+ ++LI + S D++VR+WD ++G C + + ++ + + DG+ I + D
Sbjct: 118 FNPQ-SNLIVSGSFDESVRIWDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLC 176
Query: 133 TILDVRKFKPIHR--RKFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAH 190
I D + + V+ + ++ G+ T + T+++ Y + L T H
Sbjct: 177 RIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNTLKLWDYSKGKCLKTYTGH 236
Query: 191 TAGCYCIAID---PMGRYFAVGSADSLVSLWDI 220
YCI + G++ GS D++V +W++
Sbjct: 237 KNEKYCIFANFSVTGGKWIVSGSEDNMVYIWNL 269
>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 78.2 bits (191), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 62/235 (26%), Positives = 108/235 (45%), Gaps = 22/235 (9%)
Query: 7 PFKNLHSREYT--GHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRG 64
P K ++ +T GH K V SV ++ G LAS S D+ ++W K + G
Sbjct: 11 PVKPNYALMFTLAGHTKAVSSVKFSPNGEWLASSSADKLIKIWGAYDGKFEKT----ISG 66
Query: 65 HADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINI---TYKPDGT 121
H + + W ++L+ +AS DKT+++WD SGKC + L G + + + P
Sbjct: 67 HKLGISDVAWS-SDSNLLVSASDDKTLKIWDVSSGKCLKT--LKGHSNYVFCCNFNPQSN 123
Query: 122 HIAVGNRDDELTILDVR-----KFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNGTVEVL 176
I G+ D+ + I DV+ K P H V+ + +N G + ++ +G +
Sbjct: 124 LIVSGSFDESVRIWDVKTGMCLKTLPAHSD----PVSAVHFNRDGSLIVSSSYDGLCRIW 179
Query: 177 TYPSLRPLDTVV-AHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFT 230
S + L T++ + P G+Y + D+ + LWD S+ C++T+T
Sbjct: 180 DTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNDLKLWDYSKGKCLKTYT 234
Score = 67.4 bits (163), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 50/213 (23%), Positives = 100/213 (46%), Gaps = 11/213 (5%)
Query: 14 REYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLC 73
+ +GHK + VAW+ L S S D+T ++W + K L+GH++ V
Sbjct: 62 KTISGHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKT----LKGHSNYVFCCN 117
Query: 74 WDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENIN-ITYKPDGTHIAVGNRDDEL 132
++P+ ++LI + S D++VR+WD ++G C + + ++ + + DG+ I + D
Sbjct: 118 FNPQ-SNLIVSGSFDESVRIWDVKTGMCLKTLPAHSDPVSAVHFNRDGSLIVSSSYDGLC 176
Query: 133 TILDVRKFKPIHR--RKFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAH 190
I D + + V+ + ++ G+ T + +++ Y + L T H
Sbjct: 177 RIWDTASGQCLKTLIDDDNPPVSFVKFSPNGKYILAATLDNDLKLWDYSKGKCLKTYTGH 236
Query: 191 TAGCYCIAID---PMGRYFAVGSADSLVSLWDI 220
YCI + G++ GS D++V +W++
Sbjct: 237 KNEKYCIFANFSVTGGKWIVSGSEDNMVYIWNL 269
>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure
pdb|2YMU|B Chain B, Structure Of A Highly Repetitive Propeller Structure
Length = 577
Score = 70.1 bits (170), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 61/210 (29%), Positives = 106/210 (50%), Gaps = 15/210 (7%)
Query: 14 REYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLC 73
+ TGH V VA++ G +AS S D+T ++W+ +G++ L GH+ SV +
Sbjct: 379 QTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR----NGQLLQT-LTGHSSSVWGVA 433
Query: 74 WDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINI---TYKPDGTHIAVGNRDD 130
+ P IA+AS DKTV+LW+ R+G+ Q L+G + ++ + PDG IA + DD
Sbjct: 434 FSPDD-QTIASASDDKTVKLWN-RNGQLLQ--TLTGHSSSVRGVAFSPDGQTIASAS-DD 488
Query: 131 ELTILDVRKFKPIHR-RKFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVA 189
+ L R + + V +A++ G+ + + TV++ + L T+
Sbjct: 489 KTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNG-QLLQTLTG 547
Query: 190 HTAGCYCIAIDPMGRYFAVGSADSLVSLWD 219
H++ + +A P G+ A S+D V LW+
Sbjct: 548 HSSSVWGVAFSPDGQTIASASSDKTVKLWN 577
Score = 67.4 bits (163), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 64/221 (28%), Positives = 110/221 (49%), Gaps = 16/221 (7%)
Query: 14 REYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLC 73
+ TGH V VA++ G +AS S D+T ++W+ +G++ L GH+ SV +
Sbjct: 92 QTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNR----NGQLLQT-LTGHSSSVWGVA 146
Query: 74 WDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENIN---ITYKPDGTHIAVGNRDD 130
+ P IA+AS DKTV+LW+ R+G+ Q L+G + + + + PDG IA + DD
Sbjct: 147 FSPD-GQTIASASDDKTVKLWN-RNGQLLQ--TLTGHSSSVWGVAFSPDGQTIASAS-DD 201
Query: 131 ELTILDVRKFKPIHR-RKFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVA 189
+ L R + + V +A++ G+ + + TV++ + L T+
Sbjct: 202 KTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNG-QLLQTLTG 260
Query: 190 HTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFT 230
H++ +A P G+ A S D V LW+ + L ++T T
Sbjct: 261 HSSSVNGVAFRPDGQTIASASDDKTVKLWNRNGQL-LQTLT 300
Score = 67.0 bits (162), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 64/221 (28%), Positives = 110/221 (49%), Gaps = 16/221 (7%)
Query: 14 REYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLC 73
+ TGH V VA++ G +AS S D+T ++W+ +G++ L GH+ SV +
Sbjct: 51 QTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNR----NGQLLQT-LTGHSSSVRGVA 105
Query: 74 WDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENIN---ITYKPDGTHIAVGNRDD 130
+ P IA+AS DKTV+LW+ R+G+ Q L+G + + + + PDG IA + DD
Sbjct: 106 FSPD-GQTIASASDDKTVKLWN-RNGQLLQ--TLTGHSSSVWGVAFSPDGQTIASAS-DD 160
Query: 131 ELTILDVRKFKPIHR-RKFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVA 189
+ L R + + V +A++ G+ + + TV++ + L T+
Sbjct: 161 KTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNG-QLLQTLTG 219
Query: 190 HTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFT 230
H++ +A P G+ A S D V LW+ + L ++T T
Sbjct: 220 HSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQL-LQTLT 259
Score = 67.0 bits (162), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 64/223 (28%), Positives = 110/223 (49%), Gaps = 16/223 (7%)
Query: 12 HSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQ 71
H + TGH V VA++ G +AS S D+T ++W+ +G++ L GH+ SV
Sbjct: 336 HLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNR----NGQLLQT-LTGHSSSVRG 390
Query: 72 LCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENIN---ITYKPDGTHIAVGNR 128
+ + P IA+AS DKTV+LW+ R+G+ Q L+G + + + + PD IA +
Sbjct: 391 VAFSPD-GQTIASASDDKTVKLWN-RNGQLLQ--TLTGHSSSVWGVAFSPDDQTIASAS- 445
Query: 129 DDELTILDVRKFKPIHR-RKFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTV 187
DD+ L R + + V +A++ G+ + + TV++ + L T+
Sbjct: 446 DDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNG-QLLQTL 504
Query: 188 VAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFT 230
H++ +A P G+ A S D V LW+ + L ++T T
Sbjct: 505 TGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQL-LQTLT 546
Score = 65.5 bits (158), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 63/221 (28%), Positives = 110/221 (49%), Gaps = 16/221 (7%)
Query: 14 REYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLC 73
+ TGH V+ VA+ G +AS S D+T ++W+ +G++ L GH+ SV +
Sbjct: 256 QTLTGHSSSVNGVAFRPDGQTIASASDDKTVKLWNR----NGQLLQT-LTGHSSSVWGVA 310
Query: 74 WDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENIN---ITYKPDGTHIAVGNRDD 130
+ P IA+AS DKTV+LW+ R+G+ Q L+G + + + + PDG IA + DD
Sbjct: 311 FSPD-GQTIASASDDKTVKLWN-RNGQHLQ--TLTGHSSSVWGVAFSPDGQTIASAS-DD 365
Query: 131 ELTILDVRKFKPIHR-RKFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVA 189
+ L R + + V +A++ G+ + + TV++ + L T+
Sbjct: 366 KTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNG-QLLQTLTG 424
Query: 190 HTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFT 230
H++ + +A P + A S D V LW+ + L ++T T
Sbjct: 425 HSSSVWGVAFSPDDQTIASASDDKTVKLWNRNGQL-LQTLT 464
Score = 63.9 bits (154), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 62/216 (28%), Positives = 108/216 (50%), Gaps = 16/216 (7%)
Query: 19 HKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKH 78
H V VA++ G +AS S D+T ++W+ +G++ L GH+ SV + + P
Sbjct: 15 HSSSVRGVAFSPDGQTIASASDDKTVKLWNR----NGQLLQT-LTGHSSSVWGVAFSPD- 68
Query: 79 ADLIATASGDKTVRLWDARSGKCSQQAELSGENIN---ITYKPDGTHIAVGNRDDELTIL 135
IA+AS DKTV+LW+ R+G+ Q L+G + + + + PDG IA + DD+ L
Sbjct: 69 GQTIASASDDKTVKLWN-RNGQLLQ--TLTGHSSSVRGVAFSPDGQTIASAS-DDKTVKL 124
Query: 136 DVRKFKPIHR-RKFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAHTAGC 194
R + + V +A++ G+ + + TV++ + L T+ H++
Sbjct: 125 WNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNG-QLLQTLTGHSSSV 183
Query: 195 YCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFT 230
+ +A P G+ A S D V LW+ + L ++T T
Sbjct: 184 WGVAFSPDGQTIASASDDKTVKLWNRNGQL-LQTLT 218
>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|D Chain D, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|G Chain G, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|H Chain H, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|K Chain K, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|L Chain L, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|O Chain O, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|P Chain P, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|S Chain S, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|T Chain T, Paf-Ah Holoenzyme: Lis1ALFA2
Length = 410
Score = 67.0 bits (162), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 55/235 (23%), Positives = 98/235 (41%), Gaps = 27/235 (11%)
Query: 17 TGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDP 76
+GH+ V V ++ + + S S D T +VW E + L+GH DSV + +D
Sbjct: 105 SGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFERT----LKGHTDSVQDISFD- 159
Query: 77 KHADLIATASGDKTVRLWDARSGKCSQQAELSGENI-NITYKPDGTHIAVGNRDDELTIL 135
L+A+ S D T++LWD + +C + N+ +++ P+G HI +RD + +
Sbjct: 160 HSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMW 219
Query: 136 DVRKFKPIHRRKFGYE-VNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAHTAGC 194
+V+ + E V + N G + + + TV V + + H
Sbjct: 220 EVQTGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVV 279
Query: 195 YCIAIDPMGRYFAV--------------------GSADSLVSLWDISEMLCVRTF 229
CI+ P Y ++ GS D + +WD+S +C+ T
Sbjct: 280 ECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMCLMTL 334
Score = 52.4 bits (124), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 54/209 (25%), Positives = 87/209 (41%), Gaps = 31/209 (14%)
Query: 14 REYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLC 73
+ +TGH++ V V N GT +AS S DQT RVW + K ELR H V+ +
Sbjct: 228 KTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVAT----KECKAELREHRHVVECIS 283
Query: 74 WDPKHA-DLIATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRDDEL 132
W P+ + I+ A+G +T +SGK G + G+RD +
Sbjct: 284 WAPESSYSSISEATGSET-----KKSGK------------------PGPFLLSGSRDKTI 320
Query: 133 TILDVRKFKPIHRRKFGYE--VNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAH 190
+ DV + G++ V + ++ G+ + T+ V Y + R + T+ AH
Sbjct: 321 KMWDVSTGMCLMTL-VGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAH 379
Query: 191 TAGCYCIAIDPMGRYFAVGSADSLVSLWD 219
+ Y GS D V +W+
Sbjct: 380 EHFVTSLDFHKTAPYVVTGSVDQTVKVWE 408
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/169 (18%), Positives = 67/169 (39%), Gaps = 41/169 (24%)
Query: 62 LRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDGT 121
L GH V ++ + P + ++ +AS D T+++WD +G D
Sbjct: 104 LSGHRSPVTRVIFHPVFS-VMVSASEDATIKVWDYETG-------------------DFE 143
Query: 122 HIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSL 181
G+ D V +I+++ +G++ + + T+++ +
Sbjct: 144 RTLKGHTDS---------------------VQDISFDHSGKLLASCSADMTIKLWDFQGF 182
Query: 182 RPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFT 230
+ T+ H ++I P G + S D + +W++ CV+TFT
Sbjct: 183 ECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFT 231
Score = 30.4 bits (67), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 37/80 (46%), Gaps = 5/80 (6%)
Query: 18 GHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPK 77
GH V V ++ G + S + D+T RVW + K L H V L + K
Sbjct: 336 GHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKT----LNAHEHFVTSLDFH-K 390
Query: 78 HADLIATASGDKTVRLWDAR 97
A + T S D+TV++W+ R
Sbjct: 391 TAPYVVTGSVDQTVKVWECR 410
>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|B Chain B, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|C Chain C, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
Length = 393
Score = 63.5 bits (153), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 41/129 (31%), Positives = 68/129 (52%), Gaps = 6/129 (4%)
Query: 9 KNLHSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADS 68
+NL++ + SV ++ G LA+G+ D+ R+W IE + K+ I L+GH
Sbjct: 112 ENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIE---NRKIVMI-LQGHEQD 167
Query: 69 VDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINITYKP-DGTHIAVGN 127
+ L + P D + + SGD+TVR+WD R+G+CS + + P DG +IA G+
Sbjct: 168 IYSLDYFPS-GDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGS 226
Query: 128 RDDELTILD 136
D + + D
Sbjct: 227 LDRAVRVWD 235
Score = 42.0 bits (97), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 46/91 (50%), Gaps = 9/91 (9%)
Query: 17 TGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVK--------DIELRGHADS 68
TGHK V+SV + G + SGS+D++ ++W+++ + ++ GH D
Sbjct: 253 TGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTCEVTYIGHKDF 312
Query: 69 VDQLCWDPKHADLIATASGDKTVRLWDARSG 99
V + ++ + I + S D+ V WD +SG
Sbjct: 313 VLSVA-TTQNDEYILSGSKDRGVLFWDKKSG 342
Score = 34.7 bits (78), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 27/110 (24%), Positives = 52/110 (47%), Gaps = 5/110 (4%)
Query: 113 NITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYE--VNEIAWNMTGEMFFLTTGN 170
++ + PDG +A G D + I D+ K + + G+E + + + +G+ +G+
Sbjct: 128 SVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQ-GHEQDIYSLDYFPSGDKLVSGSGD 186
Query: 171 GTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPM-GRYFAVGSADSLVSLWD 219
TV + + + ++ G +A+ P G+Y A GS D V +WD
Sbjct: 187 RTVRIWDLRTGQ-CSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWD 235
Score = 32.0 bits (71), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 37/71 (52%), Gaps = 4/71 (5%)
Query: 32 GTKLASGSVDQTARVWHIEPHGHGKVKDIELR---GHADSVDQLCWDPKHADLIATASGD 88
G +A+GS+D+ RVW E + D E GH DSV + + + + + S D
Sbjct: 219 GKYIAAGSLDRAVRVWDSETGFLVERLDSENESGTGHKDSVYSVVF-TRDGQSVVSGSLD 277
Query: 89 KTVRLWDARSG 99
++V+LW+ ++
Sbjct: 278 RSVKLWNLQNA 288
Score = 30.4 bits (67), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 40/85 (47%), Gaps = 11/85 (12%)
Query: 16 YTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLC-- 73
Y GHK V SVA + SGS D+ W + G+ + L+GH +SV +
Sbjct: 306 YIGHKDFVLSVATTQNDEYILSGSKDRGVLFWD-KKSGNPL---LMLQGHRNSVISVAVA 361
Query: 74 ----WDPKHADLIATASGDKTVRLW 94
P++ ++ AT SGD R+W
Sbjct: 362 NGSSLGPEY-NVFATGSGDCKARIW 385
Score = 28.9 bits (63), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 12/39 (30%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
Query: 184 LDTVVAHTAGCY--CIAIDPMGRYFAVGSADSLVSLWDI 220
L+T + ++ Y + P G++ A G+ D L+ +WDI
Sbjct: 114 LNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDI 152
>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The
Trypanosoma Brucei Ribosome
Length = 318
Score = 60.5 bits (145), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 55/225 (24%), Positives = 101/225 (44%), Gaps = 22/225 (9%)
Query: 15 EYTGHKKKVHSVAWNC-----TGTKLASGSVDQTARVWHIEPHGHGK-----VKDIELRG 64
+ TGH+ V S+A C T TK+ S S D+T W P H + D L G
Sbjct: 8 QLTGHRGWVTSLA--CPQTPETATKVVSTSRDKTLLSWGPNPDRHSSECSYGLPDRRLEG 65
Query: 65 HADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGEN---INITYKPDGT 121
H+ V + + + +AS D ++RLW+ ++G+C Q + G +++ + PD
Sbjct: 66 HSAFVSDVALS-NNGNFAVSASWDHSLRLWNLQNGQC--QYKFLGHTKDVLSVAFSPDNR 122
Query: 122 HIAVGNRDDELTILDVRK--FKPIHRRKFGYEVNEIAWNMTGEMFFLTTG--NGTVEVLT 177
I G RD+ L + +V+ + R V+ + ++ + + + +G + V+V
Sbjct: 123 QIVSGGRDNALRVWNVKGECMHTLSRGAHTDWVSCVRFSPSLDAPVIVSGGWDNLVKVWD 182
Query: 178 YPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISE 222
+ R + + HT + + P G A D + LWD+++
Sbjct: 183 LATGRLVTDLKGHTNYVTSVTVSPDGSLCASSDKDGVARLWDLTK 227
Score = 55.8 bits (133), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 54/222 (24%), Positives = 94/222 (42%), Gaps = 23/222 (10%)
Query: 15 EYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRG-HADSVDQLC 73
++ GH K V SVA++ ++ SG D RVW+++ G+ RG H D V +
Sbjct: 104 KFLGHTKDVLSVAFSPDNRQIVSGGRDNALRVWNVK----GECMHTLSRGAHTDWVSCVR 159
Query: 74 WDPK-HADLIATASGDKTVRLWDARSGKCSQQAELSGEN---INITYKPDGTHIAVGNRD 129
+ P A +I + D V++WD +G+ +L G ++T PDG+ A ++D
Sbjct: 160 FSPSLDAPVIVSGGWDNLVKVWDLATGRL--VTDLKGHTNYVTSVTVSPDGSLCASSDKD 217
Query: 130 DELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNGT---------VEVLTYPS 180
+ D+ K + + G +N+I ++ T G + V P
Sbjct: 218 GVARLWDLTKGEALSEMAAGAPINQICFSPNRYWMCAATEKGIRIFDLENKDIIVELAPE 277
Query: 181 LRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISE 222
+ +V C IA G G D+++ +W +SE
Sbjct: 278 HQGSKKIVPE---CVSIAWSADGSTLYSGYTDNVIRVWGVSE 316
>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|C Chain C, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|D Chain D, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
Length = 319
Score = 59.7 bits (143), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 60/224 (26%), Positives = 98/224 (43%), Gaps = 26/224 (11%)
Query: 14 REYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLC 73
+ + GHK V SV + + + SGS D+T +VW I+ L GH D V Q+
Sbjct: 101 QRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQCLAT-----LLGHNDWVSQVR 155
Query: 74 WDP-KHAD----LIATASGDKTVRLWDARSGKCSQQAELSGENINI---TYKPDGTHIAV 125
P + AD I +A DK V+ W+ + +A+ G N NI T PDGT IA
Sbjct: 156 VVPNEKADDDSVTIISAGNDKMVKAWNLNQFQI--EADFIGHNSNINTLTASPDGTLIAS 213
Query: 126 GNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLD 185
+D E+ + ++ K ++ EV +A++ T G ++V + +D
Sbjct: 214 AGKDGEIMLWNLAAKKAMYTLSAQDEVFSLAFSPNRYWLAAATATG-IKVFSLDPQYLVD 272
Query: 186 TVVAHTAGCYCIAIDPM---------GRYFAVGSADSLVSLWDI 220
+ AG Y A +P G+ G D+++ +W +
Sbjct: 273 DLRPEFAG-YSAAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQV 315
Score = 28.5 bits (62), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 27/106 (25%), Positives = 46/106 (43%), Gaps = 3/106 (2%)
Query: 35 LASGSVDQTARVWHIEPHGHG-KVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRL 93
L S S D+T W + V +GH+ V Q C +AS DKT+RL
Sbjct: 33 LLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIV-QDCTLTADGAYALSASWDKTLRL 91
Query: 94 WDARSGKCSQQ-AELSGENINITYKPDGTHIAVGNRDDELTILDVR 138
WD +G+ Q+ + +++ + I G+RD + + ++
Sbjct: 92 WDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIK 137
>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s
Ribosome
Length = 380
Score = 59.3 bits (142), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 59/225 (26%), Positives = 93/225 (41%), Gaps = 16/225 (7%)
Query: 13 SREYTGHKKKVHSVAWNC-TGTKLASGSVDQTARVWHIEPHGHGKVKDIEL-RGHADSVD 70
SR TGHK S + T+L +GS DQT +W + + E GH V
Sbjct: 150 SRVLTGHKGYASSCQYVPDQETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVL 209
Query: 71 QLCWDPKHADLIATASGDKTVRLWDAR--SGKCSQQAELSGENINITYKPDGTHIAVGNR 128
L + +A++ + S D TVRLWD R S G+ ++ + PDG G+
Sbjct: 210 SLSINSLNANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFPDGQRFGTGSD 269
Query: 129 DDELTILDVRKFK--PIHRRKFGYEVNE------IAWNMTGEMFFLTTGNGTVEV---LT 177
D + D+R ++ R+ NE +A++++G + F NG V L
Sbjct: 270 DGTCRLFDMRTGHQLQVYNREPDRNDNELPIVTSVAFSISGRLLFAGYSNGDCYVWDTLL 329
Query: 178 YPSLRPLDTVV-AHTAGCYCIAIDPMGRYFAVGSADSLVSLWDIS 221
+ L T+ +H C+ + G GS D + +W S
Sbjct: 330 AEMVLNLGTLQNSHEGRISCLGLSSDGSALCTGSWDKNLKIWAFS 374
>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae
Translating 80s Ribosome
pdb|3O2Z|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The First 80s In The Asymmetric Unit.
pdb|3O30|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The Second 80s In The Asymmetric Unit.
pdb|3U5C|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome A
pdb|3U5G|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome B
Length = 319
Score = 59.3 bits (142), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 60/224 (26%), Positives = 98/224 (43%), Gaps = 26/224 (11%)
Query: 14 REYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLC 73
+ + GHK V SV + + + SGS D+T +VW I+ L GH D V Q+
Sbjct: 101 QRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQCLA-----TLLGHNDWVSQVR 155
Query: 74 WDP-KHAD----LIATASGDKTVRLWDARSGKCSQQAELSGENINI---TYKPDGTHIAV 125
P + AD I +A DK V+ W+ + +A+ G N NI T PDGT IA
Sbjct: 156 VVPNEKADDDSVTIISAGNDKMVKAWNLNQFQI--EADFIGHNSNINTLTASPDGTLIAS 213
Query: 126 GNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLD 185
+D E+ + ++ K ++ EV +A++ T G ++V + +D
Sbjct: 214 AGKDGEIMLWNLAAKKAMYTLSAQDEVFSLAFSPNRYWLAAATATG-IKVFSLDPQYLVD 272
Query: 186 TVVAHTAGCYCIAIDPM---------GRYFAVGSADSLVSLWDI 220
+ AG Y A +P G+ G D+++ +W +
Sbjct: 273 DLRPEFAG-YSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQV 315
Score = 28.5 bits (62), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 27/106 (25%), Positives = 46/106 (43%), Gaps = 3/106 (2%)
Query: 35 LASGSVDQTARVWHIEPHGHG-KVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRL 93
L S S D+T W + V +GH+ V Q C +AS DKT+RL
Sbjct: 33 LLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIV-QDCTLTADGAYALSASWDKTLRL 91
Query: 94 WDARSGKCSQQ-AELSGENINITYKPDGTHIAVGNRDDELTILDVR 138
WD +G+ Q+ + +++ + I G+RD + + ++
Sbjct: 92 WDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIK 137
>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
pdb|3RFG|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
Length = 319
Score = 58.9 bits (141), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 60/224 (26%), Positives = 98/224 (43%), Gaps = 26/224 (11%)
Query: 14 REYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLC 73
+ + GHK V SV + + + SGS D+T +VW I+ L GH D V Q+
Sbjct: 101 QRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQCLA-----TLLGHNDWVSQVR 155
Query: 74 WDP-KHAD----LIATASGDKTVRLWDARSGKCSQQAELSGENINI---TYKPDGTHIAV 125
P + AD I +A DK V+ W+ + +A+ G N NI T PDGT IA
Sbjct: 156 VVPNEKADDDSVTIISAGNDKMVKAWNLNQFQI--EADFIGHNSNINTLTASPDGTLIAS 213
Query: 126 GNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLD 185
+D E+ + ++ K ++ EV +A++ T G ++V + +D
Sbjct: 214 AGKDGEIMLWNLAAKKAMYTLSAQDEVFSLAFSPNRYWLAAATATG-IKVFSLDPQYLVD 272
Query: 186 TVVAHTAGCYCIAIDPM---------GRYFAVGSADSLVSLWDI 220
+ AG Y A +P G+ G D+++ +W +
Sbjct: 273 DLRPEFAG-YSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQV 315
Score = 28.5 bits (62), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 27/106 (25%), Positives = 46/106 (43%), Gaps = 3/106 (2%)
Query: 35 LASGSVDQTARVWHIEPHGHG-KVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRL 93
L S S D+T W + V +GH+ V Q C +AS DKT+RL
Sbjct: 33 LLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIV-QDCTLTADGAYALSASWDKTLRL 91
Query: 94 WDARSGKCSQQ-AELSGENINITYKPDGTHIAVGNRDDELTILDVR 138
WD +G+ Q+ + +++ + I G+RD + + ++
Sbjct: 92 WDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIK 137
>pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 318
Score = 58.9 bits (141), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 46/214 (21%), Positives = 80/214 (37%), Gaps = 41/214 (19%)
Query: 12 HSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQ 71
H +GH ++V + W G LASG D VW P G V H +V
Sbjct: 142 HVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKA 201
Query: 72 LCWDPKHADLIATASG--DKTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRD 129
+ W P ++++AT G D+ +R+W+ SG C + + +I + P + G+
Sbjct: 202 VAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGH-- 259
Query: 130 DELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVA 189
G+ N++ + YP++ + +
Sbjct: 260 -------------------GFAQNQLV------------------IWKYPTMAKVAELKG 282
Query: 190 HTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEM 223
HT+ + + P G A +AD + LW E+
Sbjct: 283 HTSRVLSLTMSPDGATVASAAADETLRLWRCFEL 316
Score = 47.4 bits (111), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 40/155 (25%), Positives = 75/155 (48%), Gaps = 15/155 (9%)
Query: 88 DKTVRLWDARSGKCSQ--QAELSGENIN-ITYKPDGTHIAVGNRDDELTILDVRKFKPIH 144
D +V LW A SG Q Q E GE I+ + + +G ++AVG E+ + DV++ K +
Sbjct: 44 DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLR 103
Query: 145 RR-KFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYP---SLRPLDTVVAHTAGCYCIAID 200
V ++WN + L++G+ + + + + + T+ H+ +
Sbjct: 104 NMTSHSARVGSLSWN----SYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWA 159
Query: 201 PMGRYFAVGSADSLVSLWDISE----MLCVRTFTK 231
P GR+ A G D+LV++W + + ++TFT+
Sbjct: 160 PDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQ 194
Score = 33.1 bits (74), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 43/184 (23%), Positives = 74/184 (40%), Gaps = 21/184 (11%)
Query: 23 VHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLI 82
+ SVAW G LA G+ ++W ++ + + H+ V L W+ + ++
Sbjct: 70 ISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLR----NMTSHSARVGSLSWN---SYIL 122
Query: 83 ATASGDKTVRLWDARSGKCSQQAELSG---ENINITYKPDGTHIAVGNRDDELTILDVRK 139
++ S + D R + A LSG E + + PDG H+A G D+ + +
Sbjct: 123 SSGSRSGHIHHHDVRVAE-HHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAP 181
Query: 140 ----FKPIHR-RKFGYEVNEIAWNMTGEMFFLTTGNGT----VEVLTYPSLRPLDTVVAH 190
+ P+ + V +AW + L TG GT + + S L V AH
Sbjct: 182 GEGGWVPLQTFTQHQGAVKAVAW-CPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAH 240
Query: 191 TAGC 194
+ C
Sbjct: 241 SQVC 244
>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR
EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces
Lanuginosus Ribosome At 8.9a Resolution
Length = 313
Score = 58.9 bits (141), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 60/224 (26%), Positives = 98/224 (43%), Gaps = 26/224 (11%)
Query: 14 REYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLC 73
+ + GHK V SV + + + SGS D+T +VW I+ L GH D V Q+
Sbjct: 95 QRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQCLA-----TLLGHNDWVSQVR 149
Query: 74 WDP-KHAD----LIATASGDKTVRLWDARSGKCSQQAELSGENINI---TYKPDGTHIAV 125
P + AD I +A DK V+ W+ + +A+ G N NI T PDGT IA
Sbjct: 150 VVPNEKADDDSVTIISAGNDKMVKAWNLNQFQI--EADFIGHNSNINTLTASPDGTLIAS 207
Query: 126 GNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLD 185
+D E+ + ++ K ++ EV +A++ T G ++V + +D
Sbjct: 208 AGKDGEIMLWNLAAKKAMYTLSAQDEVFSLAFSPNRYWLAAATATG-IKVFSLDPQYLVD 266
Query: 186 TVVAHTAGCYCIAIDPM---------GRYFAVGSADSLVSLWDI 220
+ AG Y A +P G+ G D+++ +W +
Sbjct: 267 DLRPEFAG-YSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQV 309
Score = 28.5 bits (62), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 27/106 (25%), Positives = 46/106 (43%), Gaps = 3/106 (2%)
Query: 35 LASGSVDQTARVWHIEPHGHG-KVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRL 93
L S S D+T W + V +GH+ V Q C +AS DKT+RL
Sbjct: 27 LLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIV-QDCTLTADGAYALSASWDKTLRL 85
Query: 94 WDARSGKCSQQ-AELSGENINITYKPDGTHIAVGNRDDELTILDVR 138
WD +G+ Q+ + +++ + I G+RD + + ++
Sbjct: 86 WDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIK 131
>pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 420
Score = 58.5 bits (140), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 46/214 (21%), Positives = 80/214 (37%), Gaps = 41/214 (19%)
Query: 12 HSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQ 71
H +GH ++V + W G LASG D VW P G V H +V
Sbjct: 222 HVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKA 281
Query: 72 LCWDPKHADLIATASG--DKTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRD 129
+ W P ++++AT G D+ +R+W+ SG C + + +I + P + G+
Sbjct: 282 VAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGH-- 339
Query: 130 DELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVA 189
G+ N++ + YP++ + +
Sbjct: 340 -------------------GFAQNQLV------------------IWKYPTMAKVAELKG 362
Query: 190 HTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEM 223
HT+ + + P G A +AD + LW E+
Sbjct: 363 HTSRVLSLTMSPDGATVASAAADETLRLWRCFEL 396
Score = 47.4 bits (111), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 40/155 (25%), Positives = 75/155 (48%), Gaps = 15/155 (9%)
Query: 88 DKTVRLWDARSGKCSQ--QAELSGENIN-ITYKPDGTHIAVGNRDDELTILDVRKFKPIH 144
D +V LW A SG Q Q E GE I+ + + +G ++AVG E+ + DV++ K +
Sbjct: 124 DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLR 183
Query: 145 RR-KFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYP---SLRPLDTVVAHTAGCYCIAID 200
V ++WN + L++G+ + + + + + T+ H+ +
Sbjct: 184 NMTSHSARVGSLSWN----SYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWA 239
Query: 201 PMGRYFAVGSADSLVSLWDISE----MLCVRTFTK 231
P GR+ A G D+LV++W + + ++TFT+
Sbjct: 240 PDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQ 274
Score = 33.1 bits (74), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 28/115 (24%), Positives = 51/115 (44%), Gaps = 11/115 (9%)
Query: 23 VHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLI 82
+ SVAW G LA G+ ++W ++ + + H+ V L W+ + ++
Sbjct: 150 ISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLR----NMTSHSARVGSLSWN---SYIL 202
Query: 83 ATASGDKTVRLWDARSGKCSQQAELSG---ENINITYKPDGTHIAVGNRDDELTI 134
++ S + D R + A LSG E + + PDG H+A G D+ + +
Sbjct: 203 SSGSRSGHIHHHDVRVAE-HHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNV 256
>pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC.
pdb|4GGD|B Chain B, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC
Length = 431
Score = 58.5 bits (140), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 47/218 (21%), Positives = 81/218 (37%), Gaps = 41/218 (18%)
Query: 12 HSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQ 71
H +GH ++V + W G LASG D VW P G V H +V
Sbjct: 233 HVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKA 292
Query: 72 LCWDPKHADLIATASG--DKTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRD 129
+ W P ++++AT G D+ +R+W+ SG C + + +I + P + G+
Sbjct: 293 VAWCPWQSNVLATGGGTSDRHIRIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGH-- 350
Query: 130 DELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVA 189
G+ N++ + YP++ + +
Sbjct: 351 -------------------GFAQNQLV------------------IWKYPTMAKVAELKG 373
Query: 190 HTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVR 227
HT+ + + P G A +AD + LW E+ R
Sbjct: 374 HTSRVLSLTMSPDGATVASAAADETLRLWRCFELDPAR 411
Score = 47.4 bits (111), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 40/155 (25%), Positives = 75/155 (48%), Gaps = 15/155 (9%)
Query: 88 DKTVRLWDARSGKCSQ--QAELSGENIN-ITYKPDGTHIAVGNRDDELTILDVRKFKPIH 144
D +V LW A SG Q Q E GE I+ + + +G ++AVG E+ + DV++ K +
Sbjct: 135 DNSVYLWSASSGDILQLLQMEQPGEYISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLR 194
Query: 145 RR-KFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYP---SLRPLDTVVAHTAGCYCIAID 200
V ++WN + L++G+ + + + + + T+ H+ +
Sbjct: 195 NMTSHSARVGSLSWN----SYILSSGSRSGHIHHHDVRVAEHHVATLSGHSQEVCGLRWA 250
Query: 201 PMGRYFAVGSADSLVSLWDISE----MLCVRTFTK 231
P GR+ A G D+LV++W + + ++TFT+
Sbjct: 251 PDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQ 285
Score = 33.1 bits (74), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 28/115 (24%), Positives = 51/115 (44%), Gaps = 11/115 (9%)
Query: 23 VHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLI 82
+ SVAW G LA G+ ++W ++ + + H+ V L W+ + ++
Sbjct: 161 ISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLR----NMTSHSARVGSLSWN---SYIL 213
Query: 83 ATASGDKTVRLWDARSGKCSQQAELSG---ENINITYKPDGTHIAVGNRDDELTI 134
++ S + D R + A LSG E + + PDG H+A G D+ + +
Sbjct: 214 SSGSRSGHIHHHDVRVAE-HHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNV 267
>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|B Chain B, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|C Chain C, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|D Chain D, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1
Length = 319
Score = 58.2 bits (139), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 60/224 (26%), Positives = 97/224 (43%), Gaps = 26/224 (11%)
Query: 14 REYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLC 73
+ + GHK V SV + + + SGS D+T +VW I+ L GH D V Q+
Sbjct: 101 QRFVGHKSDVXSVDIDKKASXIISGSRDKTIKVWTIKGQCLAT-----LLGHNDWVSQVR 155
Query: 74 WDP-KHAD----LIATASGDKTVRLWDARSGKCSQQAELSGENINI---TYKPDGTHIAV 125
P + AD I +A DK V+ W+ + +A+ G N NI T PDGT IA
Sbjct: 156 VVPNEKADDDSVTIISAGNDKXVKAWNLNQFQI--EADFIGHNSNINTLTASPDGTLIAS 213
Query: 126 GNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLD 185
+D E+ + ++ K + EV +A++ T G ++V + +D
Sbjct: 214 AGKDGEIXLWNLAAKKAXYTLSAQDEVFSLAFSPNRYWLAAATATG-IKVFSLDPQYLVD 272
Query: 186 TVVAHTAGCYCIAIDPM---------GRYFAVGSADSLVSLWDI 220
+ AG Y A +P G+ G D+++ +W +
Sbjct: 273 DLRPEFAG-YSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVWQV 315
Score = 27.7 bits (60), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 27/106 (25%), Positives = 46/106 (43%), Gaps = 3/106 (2%)
Query: 35 LASGSVDQTARVWHIEPHGHG-KVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRL 93
L S S D+T W + V +GH+ V Q C +AS DKT+RL
Sbjct: 33 LLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIV-QDCTLTADGAYALSASWDKTLRL 91
Query: 94 WDARSGKCSQQAELSGENI-NITYKPDGTHIAVGNRDDELTILDVR 138
WD +G+ Q+ ++ ++ + I G+RD + + ++
Sbjct: 92 WDVATGETYQRFVGHKSDVXSVDIDKKASXIISGSRDKTIKVWTIK 137
>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a
Cryo-em Map Of Yeast 80s Ribosome
Length = 314
Score = 57.8 bits (138), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 60/222 (27%), Positives = 97/222 (43%), Gaps = 26/222 (11%)
Query: 14 REYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLC 73
+ + GHK V SV + + + SGS D+T +VW I+ L GH D V Q+
Sbjct: 101 QRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIKGQCLAT-----LLGHNDWVSQVR 155
Query: 74 WDP-KHAD----LIATASGDKTVRLWDARSGKCSQQAELSGENINI---TYKPDGTHIAV 125
P + AD I +A DK V+ W+ + +A+ G N NI T PDGT IA
Sbjct: 156 VVPNEKADDDSVTIISAGNDKMVKAWNLNQFQI--EADFIGHNSNINTLTASPDGTLIAS 213
Query: 126 GNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLD 185
+D E+ + ++ K ++ EV +A++ T G ++V + +D
Sbjct: 214 AGKDGEIMLWNLAAKKAMYTLSAQDEVFSLAFSPNRYWLAAATATG-IKVFSLDPQYLVD 272
Query: 186 TVVAHTAGCYCIAIDPM---------GRYFAVGSADSLVSLW 218
+ AG Y A +P G+ G D+++ +W
Sbjct: 273 DLRPEFAG-YSKAAEPHAVSLAWSADGQTLFAGYTDNVIRVW 313
Score = 28.5 bits (62), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 27/106 (25%), Positives = 46/106 (43%), Gaps = 3/106 (2%)
Query: 35 LASGSVDQTARVWHIEPHGHG-KVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRL 93
L S S D+T W + V +GH+ V Q C +AS DKT+RL
Sbjct: 33 LLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIV-QDCTLTADGAYALSASWDKTLRL 91
Query: 94 WDARSGKCSQQ-AELSGENINITYKPDGTHIAVGNRDDELTILDVR 138
WD +G+ Q+ + +++ + I G+RD + + ++
Sbjct: 92 WDVATGETYQRFVGHKSDVMSVDIDKKASMIISGSRDKTIKVWTIK 137
>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|B Chain B, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|C Chain C, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
Length = 340
Score = 56.6 bits (135), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 52/228 (22%), Positives = 99/228 (43%), Gaps = 31/228 (13%)
Query: 13 SREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQL 72
+R + GH K V SVA++ ++ SGS D+T ++W+ V+D H++ V +
Sbjct: 121 TRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQD---ESHSEWVSCV 177
Query: 73 CWDPKHADLIATASG-DKTVRLWDARSGKC-SQQAELSGENINITYKPDGTHIAVGNRDD 130
+ P ++ I + G DK V++W+ + K + +G +T PDG+ A G +D
Sbjct: 178 RFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDG 237
Query: 131 ELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLD----- 185
+ + D+ + K ++ G +N + + ++L G PS++ D
Sbjct: 238 QAMLWDLNEGKHLYTLDGGDIINALC--FSPNRYWLCAATG-------PSIKIWDLEGKI 288
Query: 186 ------------TVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDIS 221
+ A C +A G+ G D+LV +W ++
Sbjct: 289 IVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQVT 336
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 49/237 (20%), Positives = 98/237 (41%), Gaps = 18/237 (7%)
Query: 1 MGESSIPFKNLHSREYT------GHKKKVHSVAWNCTGTKLA-SGSVDQTARVWHI--EP 51
+G ++ F+++ + + T GH V +A + S S D+T +W + +
Sbjct: 13 LGTENLYFQSMMTEQMTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDE 72
Query: 52 HGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQ-AELSGE 110
+G + LRGH+ V + + S D T+RLWD +G +++ + +
Sbjct: 73 TNYG-IPQRALRGHSHFVSDVV-ISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKD 130
Query: 111 NINITYKPDGTHIAVGNRDDELTI---LDVRKFKPIHRRKFGYEVNEIAW--NMTGEMFF 165
+++ + D I G+RD + + L V K+ + V+ + + N + +
Sbjct: 131 VLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYT-VQDESHSEWVSCVRFSPNSSNPIIV 189
Query: 166 LTTGNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISE 222
+ V+V + + + HT + + P G A G D LWD++E
Sbjct: 190 SCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDGQAMLWDLNE 246
>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An
80s Complex Obtained By Docking Homology Models Of The
Rna And Proteins Into An 8.7 A Cryo-Em Map
Length = 317
Score = 56.6 bits (135), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 52/228 (22%), Positives = 99/228 (43%), Gaps = 31/228 (13%)
Query: 13 SREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQL 72
+R + GH K V SVA++ ++ SGS D+T ++W+ V+D H++ V +
Sbjct: 98 TRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYTVQD---ESHSEWVSCV 154
Query: 73 CWDPKHADLIATASG-DKTVRLWDARSGKC-SQQAELSGENINITYKPDGTHIAVGNRDD 130
+ P ++ I + G DK V++W+ + K + +G +T PDG+ A G +D
Sbjct: 155 RFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLCASGGKDG 214
Query: 131 ELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLD----- 185
+ + D+ + K ++ G +N + + ++L G PS++ D
Sbjct: 215 QAMLWDLNEGKHLYTLDGGDIINALC--FSPNRYWLCAATG-------PSIKIWDLEGKI 265
Query: 186 ------------TVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDIS 221
+ A C +A G+ G D+LV +W ++
Sbjct: 266 IVDELKQEVISTSSKAEPPQCTSLAWSADGQTLFAGYTDNLVRVWQVT 313
Score = 38.9 bits (89), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 42/196 (21%), Positives = 82/196 (41%), Gaps = 11/196 (5%)
Query: 35 LASGSVDQTARVWHI--EPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVR 92
+ S S D+T +W + + +G + LRGH+ V + + S D T+R
Sbjct: 31 ILSASRDKTIIMWKLTRDETNYG-IPQRALRGHSHFVSDVV-ISSDGQFALSGSWDGTLR 88
Query: 93 LWDARSGKCSQQ-AELSGENINITYKPDGTHIAVGNRDDELTI---LDVRKFKPIHRRKF 148
LWD +G +++ + + +++ + D I G+RD + + L V K+ +
Sbjct: 89 LWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTIKLWNTLGVCKYT-VQDESH 147
Query: 149 GYEVNEIAW--NMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYF 206
V+ + + N + + + V+V + + + HT + + P G
Sbjct: 148 SEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLANCKLKTNHIGHTGYLNTVTVSPDGSLC 207
Query: 207 AVGSADSLVSLWDISE 222
A G D LWD++E
Sbjct: 208 ASGGKDGQAMLWDLNE 223
Score = 34.3 bits (77), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 37/172 (21%), Positives = 72/172 (41%), Gaps = 12/172 (6%)
Query: 62 LRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCS---QQAELSGEN---INIT 115
L+GH V Q+ P+ D+I +AS DKT+ +W + + Q L G + ++
Sbjct: 11 LKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGHSHFVSDVV 70
Query: 116 YKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNGTVEV 175
DG G+ D L + D+ RR G+ + ++ + + + +G+ +
Sbjct: 71 ISSDGQFALSGSWDGTLRLWDLTT-GTTTRRFVGHTKDVLSVAFSSDNRQIVSGSRDKTI 129
Query: 176 LTYPSLRPLDTVV---AHTAGCYCIAIDPMGRYFAVGSA--DSLVSLWDISE 222
+ +L V +H+ C+ P + S D LV +W+++
Sbjct: 130 KLWNTLGVCKYTVQDESHSEWVSCVRFSPNSSNPIIVSCGWDKLVKVWNLAN 181
>pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55
pdb|3C9C|A Chain A, Structural Basis Of Histone H4 Recognition By P55
Length = 432
Score = 56.2 bits (134), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 54/200 (27%), Positives = 80/200 (40%), Gaps = 42/200 (21%)
Query: 32 GTKLASGSV---DQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGD 88
TK S V D T EP G + D+ LRGH L W+P + +AS D
Sbjct: 147 ATKTPSSDVLVFDYTKHPSKPEPSGECQ-PDLRLRGHQKEGYGLSWNPNLNGYLLSASDD 205
Query: 89 KTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKF 148
T+ LWD IN T K E ++D + H
Sbjct: 206 HTICLWD----------------INATPK-------------EHRVIDAKNIFTGHTAV- 235
Query: 149 GYEVNEIAWNMTGEMFFLTTGNGTVEVL----TYPSLRPLDTVVAHTAGCYCIAIDPMGR 204
V ++AW++ E F + + ++ + +P TV AHTA C++ +P
Sbjct: 236 ---VEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSE 292
Query: 205 Y-FAVGSADSLVSLWDISEM 223
+ A GSAD V+LWD+ +
Sbjct: 293 FILATGSADKTVALWDLRNL 312
Score = 45.1 bits (105), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 40/130 (30%), Positives = 58/130 (44%), Gaps = 7/130 (5%)
Query: 16 YTGHKKKVHSVAWNCTGTKLASGSV--DQTARVWHIEPHGHGKVKDIELRGHADSVDQLC 73
+TGH V VAW+ L GSV DQ +W + K + H V+ L
Sbjct: 229 FTGHTAVVEDVAWHLLHESLF-GSVADDQKLMIWDTRNNNTSKPSHT-VDAHTAEVNCLS 286
Query: 74 WDPKHADLIATASGDKTVRLWDARSGKCSQQAELS--GENINITYKP-DGTHIAVGNRDD 130
++P ++AT S DKTV LWD R+ K + S E + + P + T +A D
Sbjct: 287 FNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDR 346
Query: 131 ELTILDVRKF 140
L + D+ K
Sbjct: 347 RLHVWDLSKI 356
Score = 33.1 bits (74), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 40/95 (42%), Gaps = 13/95 (13%)
Query: 11 LHSREYTGHKKKVHSVAWNC-TGTKLASGSVDQTARVWHIEPHGHGK-VKDIE------- 61
LHS + HK ++ V W+ T LAS D+ VW + G + +D E
Sbjct: 316 LHS--FESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELL 373
Query: 62 --LRGHADSVDQLCWDPKHADLIATASGDKTVRLW 94
GH + W+P +I + S D +++W
Sbjct: 374 FIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVW 408
>pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide
Length = 430
Score = 56.2 bits (134), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 54/200 (27%), Positives = 80/200 (40%), Gaps = 42/200 (21%)
Query: 32 GTKLASGSV---DQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGD 88
TK S V D T EP G + D+ LRGH L W+P + +AS D
Sbjct: 145 ATKTPSSDVLVFDYTKHPSKPEPSGECQ-PDLRLRGHQKEGYGLSWNPNLNGYLLSASDD 203
Query: 89 KTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKF 148
T+ LWD IN T K E ++D + H
Sbjct: 204 HTICLWD----------------INATPK-------------EHRVIDAKNIFTGHTAV- 233
Query: 149 GYEVNEIAWNMTGEMFFLTTGNGTVEVL----TYPSLRPLDTVVAHTAGCYCIAIDPMGR 204
V ++AW++ E F + + ++ + +P TV AHTA C++ +P
Sbjct: 234 ---VEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSE 290
Query: 205 Y-FAVGSADSLVSLWDISEM 223
+ A GSAD V+LWD+ +
Sbjct: 291 FILATGSADKTVALWDLRNL 310
Score = 45.1 bits (105), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 40/130 (30%), Positives = 58/130 (44%), Gaps = 7/130 (5%)
Query: 16 YTGHKKKVHSVAWNCTGTKLASGSV--DQTARVWHIEPHGHGKVKDIELRGHADSVDQLC 73
+TGH V VAW+ L GSV DQ +W + K + H V+ L
Sbjct: 227 FTGHTAVVEDVAWHLLHESLF-GSVADDQKLMIWDTRNNNTSKPSHT-VDAHTAEVNCLS 284
Query: 74 WDPKHADLIATASGDKTVRLWDARSGKCSQQAELS--GENINITYKP-DGTHIAVGNRDD 130
++P ++AT S DKTV LWD R+ K + S E + + P + T +A D
Sbjct: 285 FNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDR 344
Query: 131 ELTILDVRKF 140
L + D+ K
Sbjct: 345 RLHVWDLSKI 354
Score = 33.1 bits (74), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 40/95 (42%), Gaps = 13/95 (13%)
Query: 11 LHSREYTGHKKKVHSVAWNC-TGTKLASGSVDQTARVWHIEPHGHGK-VKDIE------- 61
LHS + HK ++ V W+ T LAS D+ VW + G + +D E
Sbjct: 314 LHS--FESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELL 371
Query: 62 --LRGHADSVDQLCWDPKHADLIATASGDKTVRLW 94
GH + W+P +I + S D +++W
Sbjct: 372 FIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVW 406
>pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YBA|B Chain B, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YB8|B Chain B, Crystal Structure Of Nurf55 In Complex With Su(Z)12
Length = 422
Score = 56.2 bits (134), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 54/200 (27%), Positives = 80/200 (40%), Gaps = 42/200 (21%)
Query: 32 GTKLASGSV---DQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGD 88
TK S V D T EP G + D+ LRGH L W+P + +AS D
Sbjct: 149 ATKTPSSDVLVFDYTKHPSKPEPSGECQ-PDLRLRGHQKEGYGLSWNPNLNGYLLSASDD 207
Query: 89 KTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKF 148
T+ LWD IN T K E ++D + H
Sbjct: 208 HTICLWD----------------INATPK-------------EHRVIDAKNIFTGHTAV- 237
Query: 149 GYEVNEIAWNMTGEMFFLTTGNGTVEVL----TYPSLRPLDTVVAHTAGCYCIAIDPMGR 204
V ++AW++ E F + + ++ + +P TV AHTA C++ +P
Sbjct: 238 ---VEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSE 294
Query: 205 Y-FAVGSADSLVSLWDISEM 223
+ A GSAD V+LWD+ +
Sbjct: 295 FILATGSADKTVALWDLRNL 314
Score = 44.7 bits (104), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 40/130 (30%), Positives = 58/130 (44%), Gaps = 7/130 (5%)
Query: 16 YTGHKKKVHSVAWNCTGTKLASGSV--DQTARVWHIEPHGHGKVKDIELRGHADSVDQLC 73
+TGH V VAW+ L GSV DQ +W + K + H V+ L
Sbjct: 231 FTGHTAVVEDVAWHLLHESLF-GSVADDQKLMIWDTRNNNTSKPSHT-VDAHTAEVNCLS 288
Query: 74 WDPKHADLIATASGDKTVRLWDARSGKCSQQAELS--GENINITYKP-DGTHIAVGNRDD 130
++P ++AT S DKTV LWD R+ K + S E + + P + T +A D
Sbjct: 289 FNPYSEFILATGSADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDR 348
Query: 131 ELTILDVRKF 140
L + D+ K
Sbjct: 349 RLHVWDLSKI 358
Score = 33.1 bits (74), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 40/95 (42%), Gaps = 13/95 (13%)
Query: 11 LHSREYTGHKKKVHSVAWNC-TGTKLASGSVDQTARVWHIEPHGHGK-VKDIE------- 61
LHS + HK ++ V W+ T LAS D+ VW + G + +D E
Sbjct: 318 LHS--FESHKDEIFQVQWSPHNETILASSGTDRRLHVWDLSKIGEEQSTEDAEDGPPELL 375
Query: 62 --LRGHADSVDQLCWDPKHADLIATASGDKTVRLW 94
GH + W+P +I + S D +++W
Sbjct: 376 FIHGGHTAKISDFSWNPNEPWIICSVSEDNIMQVW 410
>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|B Chain B, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|C Chain C, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|D Chain D, Crystal Structure Of The Wd Repeat-Containing Protein 61
Length = 321
Score = 56.2 bits (134), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 57/217 (26%), Positives = 98/217 (45%), Gaps = 13/217 (5%)
Query: 18 GHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGK-VKDIELRGHADSVDQ--LCW 74
GH+ V SV + T AS S+D R+W +E +GK +K I+ A VD L +
Sbjct: 78 GHQLGVVSVDISHTLPIAASSSLDAHIRLWDLE---NGKQIKSID----AGPVDAWTLAF 130
Query: 75 DPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENI-NITYKPDGTHIAVGNRDDELT 133
P + +AT + V ++ SGK + G+ I +I Y PDG ++A G D +
Sbjct: 131 SPD-SQYLATGTHVGKVNIFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASGAIDGIIN 189
Query: 134 ILDVRKFKPIHRRK-FGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAHTA 192
I D+ K +H + + + ++ ++ + +G +++ T+ H +
Sbjct: 190 IFDIATGKLLHTLEGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGTLSGHAS 249
Query: 193 GCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTF 229
+A P +F S+D V +WD+ CV TF
Sbjct: 250 WVLNVAFCPDDTHFVSSSSDKSVKVWDVGTRTCVHTF 286
>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 1
pdb|2XZN|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 2
Length = 343
Score = 55.5 bits (132), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 50/203 (24%), Positives = 91/203 (44%), Gaps = 19/203 (9%)
Query: 35 LASGSVDQTARVWHI---EPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTV 91
L SGS D+T +W + E +G+ + L GH V L ++ I++ S DKT+
Sbjct: 42 LISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVSDLALSQENCFAISS-SWDKTL 100
Query: 92 RLWDARSGKCSQQ-AELSGENINITYKPDGTHIAVGNRDDELTILDVR---KFKPIHRRK 147
RLWD R+G ++ E ++ + PD I + E+ + ++ KF +
Sbjct: 101 RLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNILGECKFSSAEKEN 160
Query: 148 FGYEVNEIAWNMTGEM---------FFLTTG-NGTVEVLTYPSLRPLDTVVAHTAGCYCI 197
V+ + ++ + +F + G +G ++V + + T AH + +
Sbjct: 161 HSDWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWN-TNFQIRYTFKAHESNVNHL 219
Query: 198 AIDPMGRYFAVGSADSLVSLWDI 220
+I P G+Y A G D + +WDI
Sbjct: 220 SISPNGKYIATGGKDKKLLIWDI 242
Score = 53.9 bits (128), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 49/225 (21%), Positives = 96/225 (42%), Gaps = 26/225 (11%)
Query: 14 REYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLC 73
+ + GH+ +V+SVA++ ++ S ++ ++W+I G K E H+D V +
Sbjct: 112 KRFVGHQSEVYSVAFSPDNRQILSAGAEREIKLWNI--LGECKFSSAEKENHSDWVSCVR 169
Query: 74 WDP---------KHADLIATASGDKTVRLWDARSGKCSQQAELSGENIN-ITYKPDGTHI 123
+ P A A+ D +++W+ + + + N+N ++ P+G +I
Sbjct: 170 YSPIMKSANKVQPFAPYFASVGWDGRLKVWNT-NFQIRYTFKAHESNVNHLSISPNGKYI 228
Query: 124 AVGNRDDELTILDVRKFK-PIHRRKFGYEVNEIAWNMTGEMFFLTTGNGT-VEVLTYPSL 181
A G +D +L I D+ P G +N+IA+N + + T G + L S
Sbjct: 229 ATGGKDKKLLIWDILNLTYPQREFDAGSTINQIAFNPKLQWVAVGTDQGVKIFNLMTQSK 288
Query: 182 RPLDTVVAH-----------TAGCYCIAIDPMGRYFAVGSADSLV 215
P+ T+ A C +A + +G+ G D ++
Sbjct: 289 APVCTIEAEPITKAEGQKGKNPQCTSLAWNALGKKLFAGFTDGVI 333
>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1
Length = 345
Score = 55.5 bits (132), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 50/203 (24%), Positives = 86/203 (42%), Gaps = 13/203 (6%)
Query: 26 VAWNCTGTKLASGSVDQTARVWHIEPHGHGKV-KDIELRGHADSVDQLCWDPKHADLIAT 84
+AWN GT LAS D+ R+W E G + K + GH +V ++ W P + +A+
Sbjct: 22 LAWNPAGTLLASCGGDRRIRIWGTE--GDSWICKSVLSEGHQRTVRKVAWSPC-GNYLAS 78
Query: 85 ASGDKTVRLWDARSGKCSQQAELSG---ENINITYKPDGTHIAVGNRDDELTILDVRKFK 141
AS D T +W L G E ++ + P G +A +RD + + +V +
Sbjct: 79 ASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEED 138
Query: 142 PIH----RRKFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPS--LRPLDTVVAHTAGCY 195
+V + W+ + E+ + + TV++ T+ H + +
Sbjct: 139 EYECVSVLNSHTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGHESTVW 198
Query: 196 CIAIDPMGRYFAVGSADSLVSLW 218
+A DP G+ A S D V +W
Sbjct: 199 SLAFDPSGQRLASCSDDRTVRIW 221
Score = 52.0 bits (123), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 38/143 (26%), Positives = 68/143 (47%), Gaps = 7/143 (4%)
Query: 18 GHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPK 77
GH+ +V SVAW +G LA+ S D++ VW ++ + + L H V + W P
Sbjct: 103 GHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSV-LNSHTQDVKHVVWHPS 161
Query: 78 HADLIATASGDKTVRLWDARSGKCSQQAELSGEN---INITYKPDGTHIAVGNRDDELTI 134
+L+A+AS D TV+L+ A L G ++ + P G +A + D+ T+
Sbjct: 162 Q-ELLASASYDDTVKLYREEEDDWVCCATLEGHESTVWSLAFDPSGQRLASCS--DDRTV 218
Query: 135 LDVRKFKPIHRRKFGYEVNEIAW 157
R++ P + + ++ +W
Sbjct: 219 RIWRQYLPGNEQGVACSGSDPSW 241
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/81 (25%), Positives = 37/81 (45%), Gaps = 5/81 (6%)
Query: 19 HKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIEL-----RGHADSVDQLC 73
H + ++ +AW LA+ D RV+ +P+ + L + H+ V+ +
Sbjct: 251 HSRTIYDIAWCQLTGALATACGDDAIRVFQEDPNSDPQQPTFSLTAHLHQAHSQDVNCVA 310
Query: 74 WDPKHADLIATASGDKTVRLW 94
W+PK L+A+ S D V W
Sbjct: 311 WNPKEPGLLASCSDDGEVAFW 331
>pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 42/163 (25%), Positives = 76/163 (46%), Gaps = 11/163 (6%)
Query: 18 GHKKKVHSVAWNCTGT-KLASGSVDQTARVWHIEP-HGHGKVKDIE--LRGHADSVDQLC 73
GH+K+ + ++WN + L S S D T +W I GK+ D + GH+ V+ +
Sbjct: 177 GHQKEGYGLSWNSNLSGHLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVEDVA 236
Query: 74 WDPKHADLIATASGDKTVRLWDARSGKCSQQAEL----SGENINITYKPDGTHI-AVGNR 128
W H L + + D+ + +WD RS S+ + L + E +++ P I A G+
Sbjct: 237 WHLLHESLFGSVADDQKLMIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSA 296
Query: 129 DDELTILDVRKFK-PIHR-RKFGYEVNEIAWNMTGEMFFLTTG 169
D + + D+R K +H E+ ++ W+ E ++G
Sbjct: 297 DKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSG 339
Score = 51.2 bits (121), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 45/177 (25%), Positives = 72/177 (40%), Gaps = 39/177 (22%)
Query: 59 DIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINITYKP 118
D+ LRGH L W+ + + +AS D TV LWD +G
Sbjct: 172 DLRLRGHQKEGYGLSWNSNLSGHLLSASDDHTVCLWDINAGP------------------ 213
Query: 119 DGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNGTVEVL-- 176
E I+D + H V ++AW++ E F + + ++
Sbjct: 214 -----------KEGKIVDAKAIFTGHSAV----VEDVAWHLLHESLFGSVADDQKLMIWD 258
Query: 177 --TYPSLRPLDTVVAHTAGCYCIAIDPMGRY-FAVGSADSLVSLWDISEM-LCVRTF 229
+ + +P V AHTA C++ +P + A GSAD V+LWD+ + L + TF
Sbjct: 259 TRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHTF 315
Score = 45.4 bits (106), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 40/130 (30%), Positives = 58/130 (44%), Gaps = 7/130 (5%)
Query: 16 YTGHKKKVHSVAWNCTGTKLASGSV--DQTARVWHIEPHGHGKVKDIELRGHADSVDQLC 73
+TGH V VAW+ L GSV DQ +W + K + + H V+ L
Sbjct: 225 FTGHSAVVEDVAWHLLHESLF-GSVADDQKLMIWDTRSNTTSKPSHL-VDAHTAEVNCLS 282
Query: 74 WDPKHADLIATASGDKTVRLWDARSGKCSQQAELS--GENINITYKP-DGTHIAVGNRDD 130
++P ++AT S DKTV LWD R+ K S E + + P + T +A D
Sbjct: 283 FNPYSEFILATGSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDR 342
Query: 131 ELTILDVRKF 140
L + D+ K
Sbjct: 343 RLNVWDLSKI 352
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 37/72 (51%), Gaps = 3/72 (4%)
Query: 35 LASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLW 94
LA+GS D+T +W + + K+K H D + Q+ W P + ++A++ D+ + +W
Sbjct: 291 LATGSADKTVALWDLR---NLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVW 347
Query: 95 DARSGKCSQQAE 106
D Q AE
Sbjct: 348 DLSKIGEEQSAE 359
Score = 31.2 bits (69), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 22/90 (24%), Positives = 37/90 (41%), Gaps = 11/90 (12%)
Query: 16 YTGHKKKVHSVAWNC-TGTKLASGSVDQTARVWHIEPHGHGK-VKDIE---------LRG 64
+ HK ++ V W+ T LAS D+ VW + G + +D E G
Sbjct: 315 FESHKDEIFQVHWSPHNETILASSGTDRRLNVWDLSKIGEEQSAEDAEDGPPELLFIHGG 374
Query: 65 HADSVDQLCWDPKHADLIATASGDKTVRLW 94
H + W+P +I + S D +++W
Sbjct: 375 HTAKISDFSWNPNEPWVICSVSEDNIMQIW 404
>pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
pdb|3CFV|A Chain A, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 52.4 bits (124), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 42/163 (25%), Positives = 76/163 (46%), Gaps = 11/163 (6%)
Query: 18 GHKKKVHSVAWNCTGT-KLASGSVDQTARVWHIEP-HGHGKVKDIE--LRGHADSVDQLC 73
GH+K+ + ++WN + L S S D T +W I GK+ D + GH+ V+ +
Sbjct: 177 GHQKEGYGLSWNSNLSGHLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVEDVA 236
Query: 74 WDPKHADLIATASGDKTVRLWDARSGKCSQQAEL----SGENINITYKPDGTHI-AVGNR 128
W H L + + D+ + +WD RS S+ + L + E +++ P I A G+
Sbjct: 237 WHLLHESLFGSVADDQKLXIWDTRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSA 296
Query: 129 DDELTILDVRKFK-PIHR-RKFGYEVNEIAWNMTGEMFFLTTG 169
D + + D+R K +H E+ ++ W+ E ++G
Sbjct: 297 DKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSG 339
Score = 51.2 bits (121), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 45/177 (25%), Positives = 71/177 (40%), Gaps = 39/177 (22%)
Query: 59 DIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINITYKP 118
D+ LRGH L W+ + + +AS D TV LWD +G
Sbjct: 172 DLRLRGHQKEGYGLSWNSNLSGHLLSASDDHTVCLWDINAGP------------------ 213
Query: 119 DGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNGTV----E 174
E I+D + H V ++AW++ E F + + +
Sbjct: 214 -----------KEGKIVDAKAIFTGHSAV----VEDVAWHLLHESLFGSVADDQKLXIWD 258
Query: 175 VLTYPSLRPLDTVVAHTAGCYCIAIDPMGRY-FAVGSADSLVSLWDISEM-LCVRTF 229
+ + +P V AHTA C++ +P + A GSAD V+LWD+ + L + TF
Sbjct: 259 TRSNTTSKPSHLVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHTF 315
Score = 45.1 bits (105), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 40/130 (30%), Positives = 58/130 (44%), Gaps = 7/130 (5%)
Query: 16 YTGHKKKVHSVAWNCTGTKLASGSV--DQTARVWHIEPHGHGKVKDIELRGHADSVDQLC 73
+TGH V VAW+ L GSV DQ +W + K + + H V+ L
Sbjct: 225 FTGHSAVVEDVAWHLLHESLF-GSVADDQKLXIWDTRSNTTSKPSHL-VDAHTAEVNCLS 282
Query: 74 WDPKHADLIATASGDKTVRLWDARSGKCSQQAELS--GENINITYKP-DGTHIAVGNRDD 130
++P ++AT S DKTV LWD R+ K S E + + P + T +A D
Sbjct: 283 FNPYSEFILATGSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDR 342
Query: 131 ELTILDVRKF 140
L + D+ K
Sbjct: 343 RLNVWDLSKI 352
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 37/72 (51%), Gaps = 3/72 (4%)
Query: 35 LASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLW 94
LA+GS D+T +W + + K+K H D + Q+ W P + ++A++ D+ + +W
Sbjct: 291 LATGSADKTVALWDLR---NLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRLNVW 347
Query: 95 DARSGKCSQQAE 106
D Q AE
Sbjct: 348 DLSKIGEEQSAE 359
Score = 30.0 bits (66), Expect = 1.00, Method: Compositional matrix adjust.
Identities = 22/90 (24%), Positives = 36/90 (40%), Gaps = 11/90 (12%)
Query: 16 YTGHKKKVHSVAWNC-TGTKLASGSVDQTARVWHIEPHGHGK-VKDIE---------LRG 64
+ HK ++ V W+ T LAS D+ VW + G + +D E G
Sbjct: 315 FESHKDEIFQVHWSPHNETILASSGTDRRLNVWDLSKIGEEQSAEDAEDGPPELLFIHGG 374
Query: 65 HADSVDQLCWDPKHADLIATASGDKTVRLW 94
H + W+P +I + S D ++W
Sbjct: 375 HTAKISDFSWNPNEPWVICSVSEDNIXQIW 404
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 52.0 bits (123), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 48/174 (27%), Positives = 81/174 (46%), Gaps = 13/174 (7%)
Query: 8 FKNLHSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHAD 67
KNL H V+ ++ G ++AS D+T +V+ E G+ K ++++ H D
Sbjct: 603 IKNLSRLVVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAET---GE-KLLDIKAHED 658
Query: 68 SVDQLCWDPKHAD-LIATASGDKTVRLWDARSGKCSQQAELSGENIN---ITYKPDGTHI 123
V LC D IAT S DK V++WD+ +GK + E +N T K + +
Sbjct: 659 EV--LCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLL 716
Query: 124 AVGNRDDELTILDVRKFKPIHRRKFGY--EVNEIAWNMTGEMFFLTTGNGTVEV 175
A G+ D L + D+ + K FG+ VN ++ E+ + +GT+ +
Sbjct: 717 ATGSNDFFLKLWDLNQ-KECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRL 769
Score = 42.7 bits (99), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/182 (19%), Positives = 82/182 (45%), Gaps = 20/182 (10%)
Query: 44 ARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQ 103
+W+I+ ++K + RGH V + + P + + TAS D+T+R+W+ + C
Sbjct: 864 VELWNID----SRLKVADCRGHLSWVHGVMFSPDGSSFL-TASDDQTIRVWETKK-VCKN 917
Query: 104 QAELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRR--KFGY--EVNEIAWNM 159
A + + I++ ++ + T + L + ++R + I + + Y E +
Sbjct: 918 SAIVLKQEIDVVFQENETMV--------LAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCL 969
Query: 160 TGEMFFLTTGN--GTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSL 217
+ + ++ G+ G ++++ P+ R + V H I G+ S DS++ +
Sbjct: 970 SPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQV 1029
Query: 218 WD 219
W+
Sbjct: 1030 WN 1031
Score = 38.1 bits (87), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 45/90 (50%), Gaps = 11/90 (12%)
Query: 14 REYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIE---PHGHGKVKDIELRGHADSVD 70
R++T H+ V S A + TK +S S D+TA++W + P K + +R A S+D
Sbjct: 1079 RDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSPLHELKGHNGCVRCSAFSLD 1138
Query: 71 QLCWDPKHADLIATASGDKTVRLWDARSGK 100
+ L+AT + +R+W+ G+
Sbjct: 1139 GI--------LLATGDDNGEIRIWNVSDGQ 1160
Score = 37.7 bits (86), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 43/205 (20%), Positives = 82/205 (40%), Gaps = 22/205 (10%)
Query: 35 LASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLW 94
LA+GS D ++W + + K + GH +SV+ + P +L+A+ S D T+RLW
Sbjct: 716 LATGSNDFFLKLWDL----NQKECRNTMFGHTNSVNHCRFSPDD-ELLASCSADGTLRLW 770
Query: 95 DARSGKCSQ---------QAELSGENINITYK-----PDGTHIAVGNRDDELTILDVRKF 140
D RS + +E E++ + K DG I V ++ L + D+
Sbjct: 771 DVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVL-LFDIHTS 829
Query: 141 KPIHRRKFGYE--VNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAHTAGCYCIA 198
+ G+ + ++ + + VE+ S + H + + +
Sbjct: 830 GLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVM 889
Query: 199 IDPMGRYFAVGSADSLVSLWDISEM 223
P G F S D + +W+ ++
Sbjct: 890 FSPDGSSFLTASDDQTIRVWETKKV 914
Score = 37.4 bits (85), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 37/164 (22%), Positives = 69/164 (42%), Gaps = 15/164 (9%)
Query: 17 TGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVD--QLCW 74
GHKK V + + G L S S D +VW+ + + + L+ H ++V +L
Sbjct: 1000 VGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDY-----VFLQAHQETVKDFRLLQ 1054
Query: 75 DPKHADLIATASGDKTVRLWDARSGKCSQQAEL-SGENINITYKPDGTHIAVGNRDDELT 133
D + + + S D TV++W+ +G+ + G ++ D T + + D
Sbjct: 1055 DSR----LLSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAK 1110
Query: 134 ILDVRKFKPIHRRKFGYE--VNEIAWNMTGEMFFLTTGNGTVEV 175
I P+H K G+ V A+++ G + NG + +
Sbjct: 1111 IWSFDLLSPLHELK-GHNGCVRCSAFSLDGILLATGDDNGEIRI 1153
Score = 31.2 bits (69), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 31/141 (21%), Positives = 60/141 (42%), Gaps = 13/141 (9%)
Query: 1 MGESSIPFKNLHSR----EYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGK 56
+ + + N+ SR + GH VH V ++ G+ + S DQT RVW E K
Sbjct: 859 LSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVW--ETKKVCK 916
Query: 57 VKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINITY 116
I L+ D V Q ++ ++ + ++L ++G+ E ++
Sbjct: 917 NSAIVLKQEIDVVFQ-----ENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLS- 970
Query: 117 KPDGTHIAVGNRDDELTILDV 137
P ++A G+ D + I+++
Sbjct: 971 -PHLEYVAFGDEDGAIKIIEL 990
Score = 28.1 bits (61), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 25/61 (40%)
Query: 169 GNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRT 228
+ T++V + L + AH C A Y A SAD V +WD + V T
Sbjct: 635 ADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHT 694
Query: 229 F 229
+
Sbjct: 695 Y 695
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length
Murine Apaf-1
Length = 1256
Score = 52.0 bits (123), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 47/174 (27%), Positives = 79/174 (45%), Gaps = 13/174 (7%)
Query: 8 FKNLHSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHAD 67
KNL H V+ ++ G ++AS D+T +V+ E K ++++ H D
Sbjct: 610 IKNLSRLVVRPHTDAVYHACFSQDGQRIASCGADKTLQVFKAETGE----KLLDIKAHED 665
Query: 68 SVDQLCWDPKHAD-LIATASGDKTVRLWDARSGKCSQQAELSGENIN---ITYKPDGTHI 123
V LC D IAT S DK V++WD+ +GK + E +N T K + +
Sbjct: 666 EV--LCCAFSSDDSYIATCSADKKVKIWDSATGKLVHTYDEHSEQVNCCHFTNKSNHLLL 723
Query: 124 AVGNRDDELTILDVRKFKPIHRRKFGY--EVNEIAWNMTGEMFFLTTGNGTVEV 175
A G+ D L + D+ + K FG+ VN ++ E+ + +GT+ +
Sbjct: 724 ATGSNDFFLKLWDLNQ-KECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRL 776
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/182 (19%), Positives = 82/182 (45%), Gaps = 20/182 (10%)
Query: 44 ARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQ 103
+W+I+ ++K + RGH V + + P + + TAS D+T+R+W+ + C
Sbjct: 871 VELWNID----SRLKVADCRGHLSWVHGVMFSPDGSSFL-TASDDQTIRVWETKK-VCKN 924
Query: 104 QAELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRR--KFGY--EVNEIAWNM 159
A + + I++ ++ + T + L + ++R + I + + Y E +
Sbjct: 925 SAIVLKQEIDVVFQENETMV--------LAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCL 976
Query: 160 TGEMFFLTTGN--GTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSL 217
+ + ++ G+ G ++++ P+ R + V H I G+ S DS++ +
Sbjct: 977 SPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLISSSEDSVIQV 1036
Query: 218 WD 219
W+
Sbjct: 1037 WN 1038
Score = 38.1 bits (87), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 45/90 (50%), Gaps = 11/90 (12%)
Query: 14 REYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIE---PHGHGKVKDIELRGHADSVD 70
R++T H+ V S A + TK +S S D+TA++W + P K + +R A S+D
Sbjct: 1086 RDFTCHQGTVLSCAISSDATKFSSTSADKTAKIWSFDLLSPLHELKGHNGCVRCSAFSLD 1145
Query: 71 QLCWDPKHADLIATASGDKTVRLWDARSGK 100
+ L+AT + +R+W+ G+
Sbjct: 1146 GI--------LLATGDDNGEIRIWNVSDGQ 1167
Score = 37.7 bits (86), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 43/205 (20%), Positives = 82/205 (40%), Gaps = 22/205 (10%)
Query: 35 LASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLW 94
LA+GS D ++W + + K + GH +SV+ + P +L+A+ S D T+RLW
Sbjct: 723 LATGSNDFFLKLWDL----NQKECRNTMFGHTNSVNHCRFSPDD-ELLASCSADGTLRLW 777
Query: 95 DARSGKCSQ---------QAELSGENINITYK-----PDGTHIAVGNRDDELTILDVRKF 140
D RS + +E E++ + K DG I V ++ L + D+
Sbjct: 778 DVRSANERKSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAAKNKVL-LFDIHTS 836
Query: 141 KPIHRRKFGYE--VNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAHTAGCYCIA 198
+ G+ + ++ + + VE+ S + H + + +
Sbjct: 837 GLLAEIHTGHHSTIQYCDFSPYDHLAVIALSQYCVELWNIDSRLKVADCRGHLSWVHGVM 896
Query: 199 IDPMGRYFAVGSADSLVSLWDISEM 223
P G F S D + +W+ ++
Sbjct: 897 FSPDGSSFLTASDDQTIRVWETKKV 921
Score = 37.4 bits (85), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 37/164 (22%), Positives = 69/164 (42%), Gaps = 15/164 (9%)
Query: 17 TGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVD--QLCW 74
GHKK V + + G L S S D +VW+ + + + L+ H ++V +L
Sbjct: 1007 VGHKKAVRHIQFTADGKTLISSSEDSVIQVWNWQTGDY-----VFLQAHQETVKDFRLLQ 1061
Query: 75 DPKHADLIATASGDKTVRLWDARSGKCSQQAEL-SGENINITYKPDGTHIAVGNRDDELT 133
D + + + S D TV++W+ +G+ + G ++ D T + + D
Sbjct: 1062 DSR----LLSWSFDGTVKVWNVITGRIERDFTCHQGTVLSCAISSDATKFSSTSADKTAK 1117
Query: 134 ILDVRKFKPIHRRKFGYE--VNEIAWNMTGEMFFLTTGNGTVEV 175
I P+H K G+ V A+++ G + NG + +
Sbjct: 1118 IWSFDLLSPLHELK-GHNGCVRCSAFSLDGILLATGDDNGEIRI 1160
Score = 31.2 bits (69), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 31/141 (21%), Positives = 60/141 (42%), Gaps = 13/141 (9%)
Query: 1 MGESSIPFKNLHSR----EYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGK 56
+ + + N+ SR + GH VH V ++ G+ + S DQT RVW E K
Sbjct: 866 LSQYCVELWNIDSRLKVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVW--ETKKVCK 923
Query: 57 VKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINITY 116
I L+ D V Q ++ ++ + ++L ++G+ E ++
Sbjct: 924 NSAIVLKQEIDVVFQ-----ENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLS- 977
Query: 117 KPDGTHIAVGNRDDELTILDV 137
P ++A G+ D + I+++
Sbjct: 978 -PHLEYVAFGDEDGAIKIIEL 997
Score = 28.1 bits (61), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 17/61 (27%), Positives = 25/61 (40%)
Query: 169 GNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRT 228
+ T++V + L + AH C A Y A SAD V +WD + V T
Sbjct: 642 ADKTLQVFKAETGEKLLDIKAHEDEVLCCAFSSDDSYIATCSADKKVKIWDSATGKLVHT 701
Query: 229 F 229
+
Sbjct: 702 Y 702
>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex:
Destruction Motif Binding And Lysine Specificity On The
Scfbeta-Trcp1 Ubiquitin Ligase
Length = 435
Score = 51.2 bits (121), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 51/224 (22%), Positives = 94/224 (41%), Gaps = 16/224 (7%)
Query: 8 FKNLHSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHAD 67
+ +H R T K V+ + ++ K+ SG D T ++W ++ L GH
Sbjct: 123 LQRIHCRSETS--KGVYCLQYD--DQKIVSGLRDNTIKIWDKNTLECKRI----LTGHTG 174
Query: 68 SVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGN 127
SV L +D + +I T S D TVR+WD +G+ E + + + + + +
Sbjct: 175 SVLCLQYDER---VIITGSSDSTVRVWDVNTGEMLNTLIHHCEAV-LHLRFNNGMMVTCS 230
Query: 128 RDDELTILDVRKFKPIHRRK--FGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLD 185
+D + + D+ I R+ G+ + + +G+ T++V + +
Sbjct: 231 KDRSIAVWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVR 290
Query: 186 TVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTF 229
T+ H G C+ R GS+D+ + LWDI C+R
Sbjct: 291 TLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVL 332
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/124 (25%), Positives = 54/124 (43%), Gaps = 10/124 (8%)
Query: 14 REYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLC 73
R GH+ V+ V ++ + S S D+T +VW+ + L GH + L
Sbjct: 250 RVLVGHRAAVNVVDFD--DKYIVSASGDRTIKVWNTSTCEFVRT----LNGHKRGIACLQ 303
Query: 74 WDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRDDELT 133
+ + L+ + S D T+RLWD G C + E E + + D I G D ++
Sbjct: 304 YRDR---LVVSGSSDNTIRLWDIECGACLRVLE-GHEELVRCIRFDNKRIVSGAYDGKIK 359
Query: 134 ILDV 137
+ D+
Sbjct: 360 VWDL 363
>pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The
Structure Of A C. Elegans Homologue Of Yeast Actin
Interacting Protein 1 (Aip1).
pdb|1PEV|A Chain A, Crystal Structure Of The Actin Interacting Protein From
Caenorhabditis Elegans
Length = 611
Score = 50.8 bits (120), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 56/247 (22%), Positives = 104/247 (42%), Gaps = 23/247 (9%)
Query: 5 SIPFKNLHSRE-YTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELR 63
++P +L E YT H + + +G ASG V R+W H + +
Sbjct: 43 TVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTTH--ILKTTIP 100
Query: 64 GHADSVDQLCWDPKHADLIATASGDKT---VRLWDARSGKCSQQAELSGENINITYKPDG 120
+ V + WD + + A G + V L+D + + + N ++ +KP
Sbjct: 101 VFSGPVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMN-SVDFKPSR 159
Query: 121 T-HIAVGNRDDELTILDVRKFKPIHRRKFGYE---VNEIAWNMTGEMFFLTTGNGTVEVL 176
I G+ D+ + I + FK + FG V+ + +N G +F T G+GT+ +
Sbjct: 160 PFRIISGSDDNTVAIFEGPPFK--FKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLY 217
Query: 177 -----TYPSLRPLDTV--VAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTF 229
T + D++ VAH+ + + P G A SAD + +W+++ + +T
Sbjct: 218 NGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKVEKTI 277
Query: 230 ---TKLE 233
T++E
Sbjct: 278 PVGTRIE 284
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 49/91 (53%), Gaps = 9/91 (9%)
Query: 8 FKNLHSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHI-EPHGHGKVKDIELRG-H 65
F+ H+ +T H KV V+W+ +LA+GS+D + VW++ +P H I ++G H
Sbjct: 524 FELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSDH----PIIIKGAH 579
Query: 66 A-DSVDQLCWDPKHADLIATASGDKTVRLWD 95
A SV+ + W + I +A D ++ W+
Sbjct: 580 AMSSVNSVIW--LNETTIVSAGQDSNIKFWN 608
Score = 28.5 bits (62), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 25/111 (22%), Positives = 49/111 (44%), Gaps = 9/111 (8%)
Query: 119 DGTHIAVGNRDDELTI--LDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNGTVEVL 176
D +AVG +D ++ + L + E+ +A++ G FL + + +V+
Sbjct: 459 DKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEITSVAFSNNGA--FLVATDQSRKVI 516
Query: 177 TYP-----SLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISE 222
Y L ++ HTA C++ P A GS D+ V +W++++
Sbjct: 517 PYSVANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNK 567
>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana
Length = 694
Score = 50.8 bits (120), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 40/139 (28%), Positives = 70/139 (50%), Gaps = 9/139 (6%)
Query: 11 LHSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIE-LRGHADSV 69
+ +R + GH K V SVA++ ++ S S D+T ++W+ G K E GH D V
Sbjct: 463 VSTRRFVGHTKDVLSVAFSLDNRQIVSASRDRTIKLWNT--LGECKYTISEGGEGHRDWV 520
Query: 70 DQLCWDPKHAD-LIATASGDKTVRLWDARSGKCSQQAELSGEN---INITYKPDGTHIAV 125
+ + P I +AS DKTV++W+ + C ++ L+G + PDG+ A
Sbjct: 521 SCVRFSPNTLQPTIVSASWDKTVKVWNLSN--CKLRSTLAGHTGYVSTVAVSPDGSLCAS 578
Query: 126 GNRDDELTILDVRKFKPIH 144
G +D + + D+ + K ++
Sbjct: 579 GGKDGVVLLWDLAEGKKLY 597
Score = 47.4 bits (111), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 50/209 (23%), Positives = 78/209 (37%), Gaps = 40/209 (19%)
Query: 14 REYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLC 73
R TGH V V + G SGS D R+W + V GH V +
Sbjct: 424 RRLTGHSHFVEDVVLSSDGQFALSGSWDGELRLWDLA----AGVSTRRFVGHTKDVLSVA 479
Query: 74 WDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRDDELT 133
+ + ++ +AS D+T++LW+ G+C GE G+RD
Sbjct: 480 FSLDNRQIV-SASRDRTIKLWNTL-GECKYTISEGGE---------------GHRD---- 518
Query: 134 ILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAHTAG 193
+ +F P N + + TV+V + + T+ HT
Sbjct: 519 WVSCVRFSP---------------NTLQPTIVSASWDKTVKVWNLSNCKLRSTLAGHTGY 563
Query: 194 CYCIAIDPMGRYFAVGSADSLVSLWDISE 222
+A+ P G A G D +V LWD++E
Sbjct: 564 VSTVAVSPDGSLCASGGKDGVVLLWDLAE 592
>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex
pdb|2OVQ|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegc Complex
pdb|2OVR|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegn Complex
Length = 445
Score = 50.4 bits (119), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 53/214 (24%), Positives = 88/214 (41%), Gaps = 14/214 (6%)
Query: 18 GHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPK 77
GH V + C G ++ SGS D T +VW GK L GH V W +
Sbjct: 116 GHDDHVITCLQFC-GNRIVSGSDDNTLKVWSAVT---GKCLRT-LVGHTGGV----WSSQ 166
Query: 78 HAD-LIATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRDDELTILD 136
D +I + S D+T+++W+A +G+C + + + + G+RD L + D
Sbjct: 167 MRDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHE-KRVVSGSRDATLRVWD 225
Query: 137 VRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAHTAGCYC 196
+ + +H G+ G + V+V + L T+ HT Y
Sbjct: 226 IETGQCLHVL-MGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYS 284
Query: 197 IAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFT 230
+ D G + GS D+ + +WD+ C+ T T
Sbjct: 285 LQFD--GIHVVSGSLDTSIRVWDVETGNCIHTLT 316
Score = 40.8 bits (94), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 47/94 (50%), Gaps = 11/94 (11%)
Query: 18 GHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPK 77
GH +V+S+ ++ G + SGS+D + RVW +E L GH +
Sbjct: 277 GHTNRVYSLQFD--GIHVVSGSLDTSIRVWDVETGNCIHT----LTGHQSLTSGM---EL 327
Query: 78 HADLIATASGDKTVRLWDARSGKCSQQAELSGEN 111
+++ + + D TV++WD ++G+C Q L G N
Sbjct: 328 KDNILVSGNADSTVKIWDIKTGQCLQ--TLQGPN 359
>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2
In Complex With Galpha-q And Gbetagamma Subunits
Length = 340
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 44/192 (22%), Positives = 85/192 (44%), Gaps = 7/192 (3%)
Query: 48 HIEPHGHGKVKDIE-LRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAE 106
+I+P G +++ LRGH + + W + L+ +AS D + +WD+ +
Sbjct: 36 NIDPVGRIQMRTRRTLRGHLAKIYAMHWGTD-SRLLVSASQDGKLIIWDSYTTNKVHAIP 94
Query: 107 L-SGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHR--RKFGYEVNEIAWN--MTG 161
L S + Y P G ++A G D+ +I +++ + R R+ ++ +
Sbjct: 95 LRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDD 154
Query: 162 EMFFLTTGNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDIS 221
++G+ T + + + T HT +++ P R F G+ D+ LWD+
Sbjct: 155 NQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVR 214
Query: 222 EMLCVRTFTKLE 233
E +C +TFT E
Sbjct: 215 EGMCRQTFTGHE 226
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 51/215 (23%), Positives = 81/215 (37%), Gaps = 18/215 (8%)
Query: 13 SREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQL 72
SRE GH + + ++ + S D T +W IE + GH V L
Sbjct: 136 SRELAGHTGYLSCCRF-LDDNQIVTSSGDTTCALWDIET----GQQTTTFTGHTGDVMSL 190
Query: 73 CWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENIN-ITYKPDGTHIAVGNRDDE 131
P L + + D + +LWD R G C Q +IN I + P+G A G+ D
Sbjct: 191 SLAPD-TRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDAT 249
Query: 132 LTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMF-----FLTTGNGTVEVLTYPSLRP--L 184
+ D+R + + Y + I +T F L G + +L+
Sbjct: 250 CRLFDLRADQEL----MTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRA 305
Query: 185 DTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWD 219
+ H C+ + G A GS DS + +W+
Sbjct: 306 GVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1
Gamma_2 With Gdp Bound
pdb|1GP2|B Chain B, G Protein Heterotrimer Gi_alpha_1 Beta_1 Gamma_2 With Gdp
Bound
pdb|1TBG|A Chain A, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|B Chain B, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|C Chain C, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|D Chain D, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1OMW|B Chain B, Crystal Structure Of The Complex Between G Protein-Coupled
Receptor Kinase 2 And Heterotrimeric G Protein Beta 1
And Gamma 2 Subunits
pdb|1XHM|A Chain A, The Crystal Structure Of A Biologically Active Peptide
(Sigk) Bound To A G Protein Beta:gamma Heterodimer
pdb|3CIK|B Chain B, Human Grk2 In Complex With Gbetagamma Subunits
pdb|3KRW|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Soak)
pdb|3KRX|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Co-Crystal)
pdb|3AH8|B Chain B, Structure Of Heterotrimeric G Protein Galpha-Q Beta Gamma
In Complex With An Inhibitor Ym-254890
pdb|3PSC|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits
pdb|3PVU|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd101)
pdb|3PVW|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd103a)
pdb|3UZS|B Chain B, Structure Of The C13.28 Rna Aptamer Bound To The G
Protein-Coupled Receptor Kinase 2-Heterotrimeric G
Protein Beta 1 And Gamma 2 Subunit Complex
pdb|3V5W|B Chain B, Human G Protein-Coupled Receptor Kinase 2 In Complex With
Soluble Gbetagamma Subunits And Paroxetine
Length = 340
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 44/192 (22%), Positives = 85/192 (44%), Gaps = 7/192 (3%)
Query: 48 HIEPHGHGKVKDIE-LRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAE 106
+I+P G +++ LRGH + + W + L+ +AS D + +WD+ +
Sbjct: 36 NIDPVGRIQMRTRRTLRGHLAKIYAMHWGTD-SRLLVSASQDGKLIIWDSYTTNKVHAIP 94
Query: 107 L-SGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHR--RKFGYEVNEIAWN--MTG 161
L S + Y P G ++A G D+ +I +++ + R R+ ++ +
Sbjct: 95 LRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDD 154
Query: 162 EMFFLTTGNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDIS 221
++G+ T + + + T HT +++ P R F G+ D+ LWD+
Sbjct: 155 NQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVR 214
Query: 222 EMLCVRTFTKLE 233
E +C +TFT E
Sbjct: 215 EGMCRQTFTGHE 226
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 51/215 (23%), Positives = 81/215 (37%), Gaps = 18/215 (8%)
Query: 13 SREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQL 72
SRE GH + + ++ + S D T +W IE + GH V L
Sbjct: 136 SRELAGHTGYLSCCRF-LDDNQIVTSSGDTTCALWDIET----GQQTTTFTGHTGDVMSL 190
Query: 73 CWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENIN-ITYKPDGTHIAVGNRDDE 131
P L + + D + +LWD R G C Q +IN I + P+G A G+ D
Sbjct: 191 SLAPD-TRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDAT 249
Query: 132 LTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMF-----FLTTGNGTVEVLTYPSLRP--L 184
+ D+R + + Y + I +T F L G + +L+
Sbjct: 250 CRLFDLRADQEL----MTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRA 305
Query: 185 DTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWD 219
+ H C+ + G A GS DS + +W+
Sbjct: 306 GVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
>pdb|3BG0|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|D Chain D, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|E Chain E, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|H Chain H, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|D Chain D, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|E Chain E, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|H Chain H, Architecture Of A Coat For The Nuclear Pore Membrane
Length = 316
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 55/223 (24%), Positives = 102/223 (45%), Gaps = 29/223 (13%)
Query: 17 TGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCW-D 75
T H+ +H + GT+LA+ S D++ +++ + G + D LRGH V Q+ W
Sbjct: 10 TSHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIAD--LRGHEGPVWQVAWAH 67
Query: 76 PKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINIT---YKPD--GTHIAVGNRDD 130
P + +++A+ S D+ V +W +G + E +G + ++ + P G +A G+ D
Sbjct: 68 PMYGNILASCSYDRKVIIWREENGTWEKSHEHAGHDSSVNSVCWAPHDYGLILACGSSDG 127
Query: 131 ELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAH 190
+++L + + +EV +I N + G V P++ P +++ H
Sbjct: 128 AISLL-------TYTGEGQWEVKKI--NNAHTI-------GCNAVSWAPAVVP-GSLIDH 170
Query: 191 TAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLE 233
+G I + FA G D+L+ LW E + KLE
Sbjct: 171 PSGQKPNYI----KRFASGGCDNLIKLWKEEEDGQWKEEQKLE 209
Score = 31.6 bits (70), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 55/227 (24%), Positives = 84/227 (37%), Gaps = 25/227 (11%)
Query: 13 SREYTGHKKKVHSVAW--NCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVD 70
S E+ GH V+SV W + G LA GS D + G +VK I H +
Sbjct: 96 SHEHAGHDSSVNSVCWAPHDYGLILACGSSDGAISLLTYTGEGQWEVKKIN-NAHTIGCN 154
Query: 71 QLCWDPK--HADLIATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNR 128
+ W P LI SG K + SG C +L E + +K + A +
Sbjct: 155 AVSWAPAVVPGSLIDHPSGQKPNYIKRFASGGCDNLIKLWKEEEDGQWKEEQKLEAHSDW 214
Query: 129 DDELTILDVRKFKPIHRRKFGYEVNEIA-WNMTGEMFFLTTGNGTVEVLTYPSLRPLDTV 187
+ DV + P G + IA + G +F T + + + L + V
Sbjct: 215 -----VRDV-AWAP----SIGLPTSTIASCSQDGRVFIWTCDDASSNTWSPKLLHKFNDV 264
Query: 188 VAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDIS---EMLCVRTFTK 231
V H ++ AV D+ V+LW S + +C+ K
Sbjct: 265 VWH------VSWSITANILAVSGGDNKVTLWKESVDGQWVCISDVNK 305
>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs
Protein Complex
Length = 351
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 44/192 (22%), Positives = 85/192 (44%), Gaps = 7/192 (3%)
Query: 48 HIEPHGHGKVKDIE-LRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAE 106
+I+P G +++ LRGH + + W + L+ +AS D + +WD+ +
Sbjct: 47 NIDPVGRIQMRTRRTLRGHLAKIYAMHWGTD-SRLLVSASQDGKLIIWDSYTTNKVHAIP 105
Query: 107 L-SGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHR--RKFGYEVNEIAWN--MTG 161
L S + Y P G ++A G D+ +I +++ + R R+ ++ +
Sbjct: 106 LRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDD 165
Query: 162 EMFFLTTGNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDIS 221
++G+ T + + + T HT +++ P R F G+ D+ LWD+
Sbjct: 166 NQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVR 225
Query: 222 EMLCVRTFTKLE 233
E +C +TFT E
Sbjct: 226 EGMCRQTFTGHE 237
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 51/215 (23%), Positives = 81/215 (37%), Gaps = 18/215 (8%)
Query: 13 SREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQL 72
SRE GH + + ++ + S D T +W IE + GH V L
Sbjct: 147 SRELAGHTGYLSCCRF-LDDNQIVTSSGDTTCALWDIET----GQQTTTFTGHTGDVMSL 201
Query: 73 CWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENIN-ITYKPDGTHIAVGNRDDE 131
P L + + D + +LWD R G C Q +IN I + P+G A G+ D
Sbjct: 202 SLAPD-TRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDAT 260
Query: 132 LTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMF-----FLTTGNGTVEVLTYPSLRP--L 184
+ D+R + + Y + I +T F L G + +L+
Sbjct: 261 CRLFDLRADQEL----MTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRA 316
Query: 185 DTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWD 219
+ H C+ + G A GS DS + +W+
Sbjct: 317 GVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 351
>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma
Length = 340
Score = 49.7 bits (117), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 44/192 (22%), Positives = 85/192 (44%), Gaps = 7/192 (3%)
Query: 48 HIEPHGHGKVKDIE-LRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAE 106
+I+P G +++ LRGH + + W + L+ +AS D + +WD+ +
Sbjct: 36 NIDPVGRIQMRTRRTLRGHLAKIYAMHWGTD-SRLLLSASQDGKLIIWDSYTTNKVHAIP 94
Query: 107 L-SGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHR--RKFGYEVNEIAWN--MTG 161
L S + Y P G ++A G D+ +I +++ + R R+ ++ +
Sbjct: 95 LRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDD 154
Query: 162 EMFFLTTGNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDIS 221
++G+ T + + + T HT +++ P R F G+ D+ LWD+
Sbjct: 155 NQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVR 214
Query: 222 EMLCVRTFTKLE 233
E +C +TFT E
Sbjct: 215 EGMCRQTFTGHE 226
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 51/215 (23%), Positives = 81/215 (37%), Gaps = 18/215 (8%)
Query: 13 SREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQL 72
SRE GH + + ++ + S D T +W IE + GH V L
Sbjct: 136 SRELAGHTGYLSCCRF-LDDNQIVTSSGDTTCALWDIET----GQQTTTFTGHTGDVMSL 190
Query: 73 CWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENIN-ITYKPDGTHIAVGNRDDE 131
P L + + D + +LWD R G C Q +IN I + P+G A G+ D
Sbjct: 191 SLAPD-TRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDAT 249
Query: 132 LTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMF-----FLTTGNGTVEVLTYPSLRP--L 184
+ D+R + + Y + I +T F L G + +L+
Sbjct: 250 CRLFDLRADQEL----MTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRA 305
Query: 185 DTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWD 219
+ H C+ + G A GS DS + +W+
Sbjct: 306 GVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And
The Gt-Beta-Gamma Subunits
pdb|2TRC|B Chain B, PhosducinTRANSDUCIN BETA-Gamma Complex
pdb|1B9X|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin
pdb|1B9Y|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin Beta-Gamma
Length = 340
Score = 49.7 bits (117), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 44/192 (22%), Positives = 85/192 (44%), Gaps = 7/192 (3%)
Query: 48 HIEPHGHGKVKDIE-LRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAE 106
+I+P G +++ LRGH + + W + L+ +AS D + +WD+ +
Sbjct: 36 NIDPVGRIQMRTRRTLRGHLAKIYAMHWGTD-SRLLLSASQDGKLIIWDSYTTNKVHAIP 94
Query: 107 L-SGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHR--RKFGYEVNEIAWN--MTG 161
L S + Y P G ++A G D+ +I +++ + R R+ ++ +
Sbjct: 95 LRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDD 154
Query: 162 EMFFLTTGNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDIS 221
++G+ T + + + T HT +++ P R F G+ D+ LWD+
Sbjct: 155 NQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVR 214
Query: 222 EMLCVRTFTKLE 233
E +C +TFT E
Sbjct: 215 EGMCRQTFTGHE 226
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 51/215 (23%), Positives = 81/215 (37%), Gaps = 18/215 (8%)
Query: 13 SREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQL 72
SRE GH + + ++ + S D T +W IE + GH V L
Sbjct: 136 SRELAGHTGYLSCCRF-LDDNQIVTSSGDTTCALWDIET----GQQTTTFTGHTGDVMSL 190
Query: 73 CWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENIN-ITYKPDGTHIAVGNRDDE 131
P L + + D + +LWD R G C Q +IN I + P+G A G+ D
Sbjct: 191 SLAPD-TRLFVSGACDASAKLWDVREGMCRQTFTGHESDINAICFFPNGNAFATGSDDAT 249
Query: 132 LTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMF-----FLTTGNGTVEVLTYPSLRP--L 184
+ D+R + + Y + I +T F L G + +L+
Sbjct: 250 CRLFDLRADQEL----MTYSHDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRA 305
Query: 185 DTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWD 219
+ H C+ + G A GS DS + +W+
Sbjct: 306 GVLAGHDNRVSCLGVTDDGMAVATGSWDSFLKIWN 340
>pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4
pdb|2XU7|A Chain A, Structural Basis For Rbap48 Binding To Fog-1
pdb|2XU7|B Chain B, Structural Basis For Rbap48 Binding To Fog-1
Length = 425
Score = 48.9 bits (115), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 46/177 (25%), Positives = 73/177 (41%), Gaps = 39/177 (22%)
Query: 59 DIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWD----ARSGKCSQQAELSGENINI 114
D+ LRGH L W+P + + +AS D T+ LWD + GK
Sbjct: 170 DLRLRGHQKEGYGLSWNPNLSGHLLSASDDHTICLWDISAVPKEGKVV------------ 217
Query: 115 TYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNGTVE 174
D I G+ +++ + +H FG ++ M + T N T
Sbjct: 218 ----DAKTIFTGHT----AVVEDVSWHLLHESLFGSVADD-----QKLMIWDTRSNNTS- 263
Query: 175 VLTYPSLRPLDTVVAHTAGCYCIAIDPMGRY-FAVGSADSLVSLWDISEM-LCVRTF 229
+P +V AHTA C++ +P + A GSAD V+LWD+ + L + +F
Sbjct: 264 -------KPSHSVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLRNLKLKLHSF 313
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 39/83 (46%), Gaps = 9/83 (10%)
Query: 19 HKKKVHSVAWNCTGTK------LASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQL 72
H H+ NC LA+GS D+T +W + + K+K H D + Q+
Sbjct: 267 HSVDAHTAEVNCLSFNPYSEFILATGSADKTVALWDLR---NLKLKLHSFESHKDEIFQV 323
Query: 73 CWDPKHADLIATASGDKTVRLWD 95
W P + ++A++ D+ + +WD
Sbjct: 324 QWSPHNETILASSGTDRRLNVWD 346
Score = 32.7 bits (73), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 25/95 (26%), Positives = 40/95 (42%), Gaps = 13/95 (13%)
Query: 11 LHSREYTGHKKKVHSVAWNC-TGTKLASGSVDQTARVWHIEPHGHGKVKD------IELR 63
LHS + HK ++ V W+ T LAS D+ VW + G + + EL
Sbjct: 310 LHS--FESHKDEIFQVQWSPHNETILASSGTDRRLNVWDLSKIGEEQSPEDAEDGPPELL 367
Query: 64 ----GHADSVDQLCWDPKHADLIATASGDKTVRLW 94
GH + W+P +I + S D +++W
Sbjct: 368 FIHGGHTAKISDFSWNPNEPWVICSVSEDNIMQVW 402
>pdb|4AEZ|A Chain A, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|D Chain D, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|G Chain G, Crystal Structure Of Mitotic Checkpoint Complex
Length = 401
Score = 48.9 bits (115), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 31/121 (25%), Positives = 52/121 (42%), Gaps = 8/121 (6%)
Query: 18 GHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPK 77
GH +V +AW G +LASG D ++W + H +V + W P
Sbjct: 215 GHSSEVCGLAWRSDGLQLASGGNDNVVQIW----DARSSIPKFTKTNHNAAVKAVAWCPW 270
Query: 78 HADLIATASG--DKTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAV--GNRDDELT 133
++L+AT G DK + W+A +G + + ++ + P I G D+ L+
Sbjct: 271 QSNLLATGGGTMDKQIHFWNAATGARVNTVDAGSQVTSLIWSPHSKEIMSTHGFPDNNLS 330
Query: 134 I 134
I
Sbjct: 331 I 331
Score = 33.9 bits (76), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 40/162 (24%), Positives = 67/162 (41%), Gaps = 13/162 (8%)
Query: 17 TGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDP 76
T V SV W+ G+ L+ G + ++ +E + K + GH V L W+
Sbjct: 131 TDESTYVASVKWSHDGSFLSVGLGNGLVDIYDVE----SQTKLRTMAGHQARVGCLSWN- 185
Query: 77 KHADLIATASGDKTVRLWDARSGKCSQQAELSG---ENINITYKPDGTHIAVGNRDDELT 133
+H ++++ S + D R Q L G E + ++ DG +A G D+ +
Sbjct: 186 RH--VLSSGSRSGAIHHHDVRIAN-HQIGTLQGHSSEVCGLAWRSDGLQLASGGNDNVVQ 242
Query: 134 ILDVRKFKP-IHRRKFGYEVNEIAWNMTGEMFFLTTGNGTVE 174
I D R P + V +AW + L TG GT++
Sbjct: 243 IWDARSSIPKFTKTNHNAAVKAVAW-CPWQSNLLATGGGTMD 283
Score = 27.7 bits (60), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 13/47 (27%), Positives = 21/47 (44%)
Query: 152 VNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAHTAGCYCIA 198
V + W+ G + GNG V++ S L T+ H A C++
Sbjct: 137 VASVKWSHDGSFLSVGLGNGLVDIYDVESQTKLRTMAGHQARVGCLS 183
>pdb|2AQ5|A Chain A, Crystal Structure Of Murine Coronin-1
Length = 402
Score = 47.0 bits (110), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 35/129 (27%), Positives = 57/129 (44%), Gaps = 7/129 (5%)
Query: 18 GHKKKVHSVAWNC-TGTKLASGSVDQTARVWHIEPHG---HGKVKDIELRGHADSVDQLC 73
GH V +AW +ASGS D T VW I G + I L GH V +
Sbjct: 79 GHTAPVLDIAWXPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVA 138
Query: 74 WDPKHADLIATASGDKTVRLWDARSGKC--SQQAELSGENI-NITYKPDGTHIAVGNRDD 130
W P +++ +A D + +WD +G + ++ + I ++ + DG I RD
Sbjct: 139 WHPTAQNVLLSAGXDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRDK 198
Query: 131 ELTILDVRK 139
+ +++ RK
Sbjct: 199 RVRVIEPRK 207
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 46.6 bits (109), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 44/172 (25%), Positives = 82/172 (47%), Gaps = 13/172 (7%)
Query: 10 NLHSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSV 69
NL H V+ ++ G ++AS D+T +V+ E G+ K +E++ H D V
Sbjct: 611 NLSRLVVRPHTDAVYHACFSEDGQRIASCGADKTLQVFKAET---GE-KLLEIKAHEDEV 666
Query: 70 DQLCWDPKHAD-LIATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDGTH---IAV 125
LC D IAT S DK V++W++ +G+ + E +N + + +H +A
Sbjct: 667 --LCCAFSTDDRFIATCSVDKKVKIWNSMTGELVHTYDEHSEQVNCCHFTNSSHHLLLAT 724
Query: 126 GNRDDELTILDVRKFKPIHRRKFGY--EVNEIAWNMTGEMFFLTTGNGTVEV 175
G+ D L + D+ + K FG+ VN ++ ++ + +GT+++
Sbjct: 725 GSSDCFLKLWDLNQ-KECRNTMFGHTNSVNHCRFSPDDKLLASCSADGTLKL 775
Score = 34.3 bits (77), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 33/123 (26%), Positives = 55/123 (44%), Gaps = 28/123 (22%)
Query: 14 REYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGH-------A 66
+++ H+ V S + TK +S S D+TA++W + + ELRGH A
Sbjct: 1085 KDFVCHQGTVLSCDISHDATKFSSTSADKTAKIWSFDL----LLPLHELRGHNGCVRCSA 1140
Query: 67 DSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQ-AELSGEN--------INITYK 117
SVD + L+AT + +R+W+ +G+ A LS E ++ +
Sbjct: 1141 FSVD--------STLLATGDDNGEIRIWNVSNGELLHLCAPLSEEGAATHGGWVTDLCFS 1192
Query: 118 PDG 120
PDG
Sbjct: 1193 PDG 1195
Score = 33.1 bits (74), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 32/139 (23%), Positives = 61/139 (43%), Gaps = 9/139 (6%)
Query: 15 EYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCW 74
E H+ +V A++ +A+ SVD+ ++W+ D H++ V+ +
Sbjct: 658 EIKAHEDEVLCCAFSTDDRFIATCSVDKKVKIWNSMTGELVHTYD----EHSEQVNCCHF 713
Query: 75 -DPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENIN-ITYKPDGTHIAVGNRDDEL 132
+ H L+AT S D ++LWD +C ++N + PD +A + D L
Sbjct: 714 TNSSHHLLLATGSSDCFLKLWDLNQKECRNTMFGHTNSVNHCRFSPDDKLLASCSADGTL 773
Query: 133 TILD---VRKFKPIHRRKF 148
+ D + K I+ ++F
Sbjct: 774 KLWDATSANERKSINVKQF 792
Score = 31.6 bits (70), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 29/129 (22%), Positives = 55/129 (42%), Gaps = 9/129 (6%)
Query: 18 GHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPK 77
GH VH V ++ G+ + S DQT R+W E K + L+ D V Q +
Sbjct: 886 GHLSWVHGVMFSPDGSSFLTSSDDQTIRLW--ETKKVCKNSAVMLKQEVDVVFQ-----E 938
Query: 78 HADLIATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRDDELTILDV 137
+ ++ + ++L + R+G+ E ++ P +IA G+ + + IL++
Sbjct: 939 NEVMVLAVDHIRRLQLINGRTGQIDYLTEAQVSCCCLS--PHLQYIAFGDENGAIEILEL 996
Query: 138 RKFKPIHRR 146
+ R
Sbjct: 997 VNNRIFQSR 1005
Score = 28.1 bits (61), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 46/209 (22%), Positives = 74/209 (35%), Gaps = 59/209 (28%)
Query: 19 HKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKH 78
HKK V + + L S S D +VW+ + K I LRGH ++V K+
Sbjct: 1008 HKKTVWHIQFTADEKTLISSSDDAEIQVWNWQLD-----KCIFLRGHQETVKDFRL-LKN 1061
Query: 79 ADLIATASGDKTVRLWDARSGK------CSQQAELSGENINITYKPDGTHIAVGNRDDEL 132
+ L+ + S D TV++W+ +G C Q LS D +H
Sbjct: 1062 SRLL-SWSFDGTVKVWNIITGNKEKDFVCHQGTVLSC---------DISH---------- 1101
Query: 133 TILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAHTA 192
D KF T+ + T ++ ++ L PL + H
Sbjct: 1102 ---DATKFSS------------------------TSADKTAKIWSFDLLLPLHELRGHNG 1134
Query: 193 GCYCIAIDPMGRYFAVGSADSLVSLWDIS 221
C A A G + + +W++S
Sbjct: 1135 CVRCSAFSVDSTLLATGDDNGEIRIWNVS 1163
>pdb|2B4E|A Chain A, Crystal Structure Of Murine Coronin-1: Monoclinic Form
Length = 402
Score = 46.2 bits (108), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 36/130 (27%), Positives = 58/130 (44%), Gaps = 9/130 (6%)
Query: 18 GHKKKVHSVAWNC--TGTKLASGSVDQTARVWHIEPHG---HGKVKDIELRGHADSVDQL 72
GH V +AW C +ASGS D T VW I G + I L GH V +
Sbjct: 79 GHTAPVLDIAW-CPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIV 137
Query: 73 CWDPKHADLIATASGDKTVRLWDARSGKC--SQQAELSGENI-NITYKPDGTHIAVGNRD 129
W P +++ +A D + +WD +G + ++ + I ++ + DG I RD
Sbjct: 138 AWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLGPDVHPDTIYSVDWSRDGALICTSCRD 197
Query: 130 DELTILDVRK 139
+ +++ RK
Sbjct: 198 KRVRVIEPRK 207
>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
pdb|2PBI|D Chain D, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
Length = 354
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 46/179 (25%), Positives = 75/179 (41%), Gaps = 13/179 (7%)
Query: 62 LRGHADSVDQLCWD-PKHADLIATASGDKTVRLWDARSGKCSQQAELSGE-NINITYKPD 119
L+GH + V LC D K I ++S D V +WD+ + + + Y P
Sbjct: 60 LKGHGNKV--LCMDWCKDKRRIVSSSQDGKVIVWDSFTTNKEHAVTMPCTWVMACAYAPS 117
Query: 120 GTHIAVGNRDDELTI----LDVRKFKPIHRRKFGYEVNEI-AWNMTG-EMFFLT-TGNGT 172
G IA G D++ ++ D + ++ N + A + T +M LT +G+GT
Sbjct: 118 GCAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSFTNSDMQILTASGDGT 177
Query: 173 VEVLTYPSLRPLDTVVAHTAGCYCIAIDP--MGRYFAVGSADSLVSLWDISEMLCVRTF 229
+ S + L + H A C+ + P G F G D +WD+ CV+ F
Sbjct: 178 CALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWDMRSGQCVQAF 236
Score = 41.2 bits (95), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 47/247 (19%), Positives = 90/247 (36%), Gaps = 53/247 (21%)
Query: 23 VHSVAWNCTGTKLASGSVDQTARVWHI--EPHGHGKVKDIELRGHADSVDQLCWDPKHAD 80
V + A+ +G +A G +D V+ + + + + K + H + + + ++D
Sbjct: 109 VMACAYAPSGCAIACGGLDNKCSVYPLTFDKNENMAAKKKSVAMHTNYLSACSF--TNSD 166
Query: 81 L-IATASGDKTVRLWDA------------------------------------------- 96
+ I TASGD T LWD
Sbjct: 167 MQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNTFVSGGCDKKAMVWD 226
Query: 97 -RSGKCSQQAELSGENIN-ITYKPDGTHIAVGNRDDELTILDVRKFKPI---HRRKFGYE 151
RSG+C Q E ++N + Y P G A G+ D + D+R + + + +
Sbjct: 227 MRSGQCVQAFETHESDVNSVRYYPSGDAFASGSDDATCRLYDLRADREVAIYSKESIIFG 286
Query: 152 VNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSA 211
+ + ++++G + F + T+ V + + H + + P G F GS
Sbjct: 287 ASSVDFSLSGRLLFAGYNDYTINVWDVLKGSRVSILFGHENRVSTLRVSPDGTAFCSGSW 346
Query: 212 DSLVSLW 218
D + +W
Sbjct: 347 DHTLRVW 353
Score = 27.7 bits (60), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 18/30 (60%)
Query: 18 GHKKKVHSVAWNCTGTKLASGSVDQTARVW 47
GH+ +V ++ + GT SGS D T RVW
Sbjct: 324 GHENRVSTLRVSPDGTAFCSGSWDHTLRVW 353
>pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1
Length = 330
Score = 45.1 bits (105), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 38/127 (29%), Positives = 60/127 (47%), Gaps = 11/127 (8%)
Query: 17 TGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIEL----RGHADSVDQL 72
T HKK + SVAW + LA+GS D T +W E + +++L GH + V +
Sbjct: 55 TAHKKAIRSVAWRPHTSLLAAGSFDSTVSIWAKEESAD-RTFEMDLLAIIEGHENEVKGV 113
Query: 73 CWDPKHADLIATASGDKTVRLWDA-RSGK----CSQQAELSGENINITYKPDGTHIAVGN 127
W +AT S DK+V +W+ SG+ S E S + ++ + P +A +
Sbjct: 114 AW-SNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEALLASSS 172
Query: 128 RDDELTI 134
DD + I
Sbjct: 173 YDDTVRI 179
Score = 33.5 bits (75), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 25/109 (22%), Positives = 48/109 (44%), Gaps = 11/109 (10%)
Query: 35 LASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLW 94
LA+GS D+ ++ ++ + ++ H ++ + W P H L+A S D TV +W
Sbjct: 27 LATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRP-HTSLLAAGSFDSTVSIW 85
Query: 95 DARSGKCSQQAEL---------SGENINITYKPDGTHIAVGNRDDELTI 134
A+ + E+ E + + DG ++A +RD + I
Sbjct: 86 -AKEESADRTFEMDLLAIIEGHENEVKGVAWSNDGYYLATCSRDKSVWI 133
Score = 33.1 bits (74), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 43/169 (25%), Positives = 66/169 (39%), Gaps = 20/169 (11%)
Query: 19 HKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKH 78
H + V V W+ + LAS S D T R+W V L GH +V +D
Sbjct: 152 HSQDVKHVIWHPSEALLASSSYDDTVRIWKDYDDDWECVA--VLNGHEGTVWSSDFDKTE 209
Query: 79 ADL-IATASGDKTVRLWDARSGKCSQQAELSGENI----------NITYKPDGTHIAVGN 127
+ + S D TVR+W Q E E I N+ + +G +VG
Sbjct: 210 GVFRLCSGSDDSTVRVWKYMGDDEDDQQEWVCEAILPDVHKRQVYNVAWGFNGLIASVG- 268
Query: 128 RDDELTILDVR--KFKPIHRRKFG---YEVNEIAW-NMTGEMFFLTTGN 170
D L + + ++K +R YE+N + W + G+ T G+
Sbjct: 269 ADGVLAVYEEVDGEWKVFAKRALCHGVYEINVVKWLELNGKTILATGGD 317
>pdb|3EWE|A Chain A, Crystal Structure Of The Nup85SEH1 COMPLEX
pdb|3EWE|C Chain C, Crystal Structure Of The Nup85SEH1 COMPLEX
Length = 349
Score = 44.7 bits (104), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 48/98 (48%), Gaps = 5/98 (5%)
Query: 17 TGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCW-D 75
+GH VH V ++ G +A+ S DQ +V+ ++ R H S+ + W
Sbjct: 6 SGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWAS 65
Query: 76 PKHADLIATASGDKTVRLWDARSGKCSQQAELSGENIN 113
P++ +IA+AS DKTV+LW+ Q E SG N
Sbjct: 66 PEYGRIIASASYDKTVKLWEED----PDQEECSGRRWN 99
Score = 32.7 bits (73), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 20/33 (60%)
Query: 15 EYTGHKKKVHSVAWNCTGTKLASGSVDQTARVW 47
E+ H +V SV+WN TGT L+S D R+W
Sbjct: 299 EHDDHNGEVWSVSWNLTGTILSSAGDDGKVRLW 331
>pdb|4A11|B Chain B, Structure Of The Hsddb1-Hscsa Complex
Length = 408
Score = 44.7 bits (104), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 42/182 (23%), Positives = 72/182 (39%), Gaps = 27/182 (14%)
Query: 62 LRGHADSVDQLCWDPKHADLIATASGDKTVRLWDAR------------SGKCSQQAELS- 108
L+GH + + W P++ ++ATAS D V+LWD R +GK SQ E +
Sbjct: 182 LQGHRQEILAVSWSPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESAN 241
Query: 109 ----GENINITYKPDGTHIAVGNRDDELTILD--------VRKFKPIHRRKFGYEVNEIA 156
G+ + + DG H+ D+ + + + V K + K G + ++
Sbjct: 242 TAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGENTLVNYGKVCNNSKKGLKFT-VS 300
Query: 157 WNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVS 216
+ E F+ G+ T+ V T S + + H C + GS D +
Sbjct: 301 CGCSSEFVFVPYGS-TIAVYTVYSGEQITMLKGHYKTVDCCVFQSNFQELYSGSRDCNIL 359
Query: 217 LW 218
W
Sbjct: 360 AW 361
Score = 30.4 bits (67), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 18/77 (23%), Positives = 36/77 (46%), Gaps = 3/77 (3%)
Query: 65 HADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDGTH-- 122
H SV+ + W P + ++S DKT+++WD + + + + P T
Sbjct: 98 HRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQTADVFNFEETVYSHHMSPVSTKHC 157
Query: 123 -IAVGNRDDELTILDVR 138
+AVG R ++ + D++
Sbjct: 158 LVAVGTRGPKVQLCDLK 174
>pdb|3F3F|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3F|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3F|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3F|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3G|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
pdb|3F3G|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
pdb|3F3G|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
pdb|3F3G|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
Length = 351
Score = 44.7 bits (104), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 48/98 (48%), Gaps = 5/98 (5%)
Query: 17 TGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCW-D 75
+GH VH V ++ G +A+ S DQ +V+ ++ R H S+ + W
Sbjct: 8 SGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWAS 67
Query: 76 PKHADLIATASGDKTVRLWDARSGKCSQQAELSGENIN 113
P++ +IA+AS DKTV+LW+ Q E SG N
Sbjct: 68 PEYGRIIASASYDKTVKLWEED----PDQEECSGRRWN 101
Score = 32.7 bits (73), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 20/33 (60%)
Query: 15 EYTGHKKKVHSVAWNCTGTKLASGSVDQTARVW 47
E+ H +V SV+WN TGT L+S D R+W
Sbjct: 301 EHDDHNGEVWSVSWNLTGTILSSAGDDGKVRLW 333
>pdb|3F3P|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|I Chain I, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|J Chain J, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
Length = 351
Score = 44.7 bits (104), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 48/98 (48%), Gaps = 5/98 (5%)
Query: 17 TGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCW-D 75
+GH VH V ++ G +A+ S DQ +V+ ++ R H S+ + W
Sbjct: 8 SGHDDLVHDVVYDFYGRHVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWAS 67
Query: 76 PKHADLIATASGDKTVRLWDARSGKCSQQAELSGENIN 113
P++ +IA+AS DKTV+LW+ Q E SG N
Sbjct: 68 PEYGRIIASASYDKTVKLWEED----PDQEECSGRRWN 101
Score = 32.7 bits (73), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 20/33 (60%)
Query: 15 EYTGHKKKVHSVAWNCTGTKLASGSVDQTARVW 47
E+ H +V SV+WN TGT L+S D R+W
Sbjct: 301 EHDDHNGEVWSVSWNLTGTILSSAGDDGKVRLW 333
>pdb|1R5M|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Sif2
Length = 425
Score = 44.7 bits (104), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 57/133 (42%), Gaps = 7/133 (5%)
Query: 18 GHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPK 77
GH + + +N T L S S D T R+WH G+G ++ GH+ S+ W
Sbjct: 245 GHHGPISVLEFNDTNKLLLSASDDGTLRIWH---GGNGNSQNC-FYGHSQSIVSASW--V 298
Query: 78 HADLIATASGDKTVRLWDARSGKCSQQAELSGENINI-TYKPDGTHIAVGNRDDELTILD 136
D + + S D +VRLW + + + G I DG AV D ++ + D
Sbjct: 299 GDDKVISCSMDGSVRLWSLKQNTLLALSIVDGVPIFAGRISQDGQKYAVAFMDGQVNVYD 358
Query: 137 VRKFKPIHRRKFG 149
++K R +G
Sbjct: 359 LKKLNSKSRSLYG 371
>pdb|3ZWL|B Chain B, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
pdb|3ZWL|D Chain D, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
Length = 369
Score = 44.3 bits (103), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 38/77 (49%)
Query: 152 VNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSA 211
+ ++ +N G++ F + + + V + L T+ HT + I +D +Y GSA
Sbjct: 35 LTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSIDVDCFTKYCVTGSA 94
Query: 212 DSLVSLWDISEMLCVRT 228
D + LWD+S CV T
Sbjct: 95 DYSIKLWDVSNGQCVAT 111
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 56/239 (23%), Positives = 96/239 (40%), Gaps = 37/239 (15%)
Query: 17 TGHKKKVHSVAWNCTGTKLASGSVDQTARVWH-IEPHGHGKVKDIELRGHAD---SVDQL 72
TGH++ + V +N G L S S D +A VW+ + G L GH S+D
Sbjct: 29 TGHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGT-----LDGHTGTIWSIDVD 83
Query: 73 CWDPKHADLIATASGDKTVRLWDARSGKC---------SQQAELS--GENI-----NITY 116
C+ T S D +++LWD +G+C ++ E S G N+
Sbjct: 84 CF----TKYCVTGSADYSIKLWDVSNGQCVATWKSPVPVKRVEFSPCGNYFLAILDNVMK 139
Query: 117 KPDGTHIAVGNRDDELTILDVRKFKPIHR--RKFGYEVNEIA-WNMTGEMFFLTTGNGTV 173
P +I RD L +PIH+ G + +A W+ G+ ++ G+
Sbjct: 140 NPGSINIYEIERDSATHELTKVSEEPIHKIITHEGLDAATVAGWSTKGK--YIIAGHKDG 197
Query: 174 EVLTYP---SLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTF 229
++ Y + +D++ H + P YF S D+ L D+S + ++ +
Sbjct: 198 KISKYDVSNNYEYVDSIDLHEKSISDMQFSPDLTYFITSSRDTNSFLVDVSTLQVLKKY 256
Score = 28.9 bits (63), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 24/119 (20%), Positives = 41/119 (34%), Gaps = 14/119 (11%)
Query: 113 NITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGN-- 170
++ + PD T+ +RD ++DV + + + + +N E L G
Sbjct: 223 DMQFSPDLTYFITSSRDTNSFLVDVSTLQVLKKYETDCPLNTAVITPLKEFIILGGGQEA 282
Query: 171 ----------GTVEVLTYPSL--RPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSL 217
G E Y + + V H +AI P G +A G D + L
Sbjct: 283 KDVTTTSANEGKFEARFYHKIFEEEIGRVQGHFGPLNTVAISPQGTSYASGGEDGFIRL 341
>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif
Length = 604
Score = 43.9 bits (102), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 49/208 (23%), Positives = 88/208 (42%), Gaps = 20/208 (9%)
Query: 14 REYTGHKKKVHSVAWNCTG-TKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQL 72
+ + GH+ V VA+N + ASG +D+T +VW + G G V+ +
Sbjct: 134 QTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSL---GQSTPNFTLTTGQERGVNYV 190
Query: 73 CWDP-KHADLIATASGDKTVRLWDARSGKCSQQAELSGENINI-TYKPDGTHIAVGNRDD 130
+ P + TAS D T+++WD ++ C E N++ + P I G+ D
Sbjct: 191 DYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDG 250
Query: 131 ELTILDVRKFKPIHRRKFGYEVNE-IAWNMTGEMFFLTTG-NGTVEVLTYPSLRPLDTVV 188
L I + +K G E + IA + TG ++ +G + VL+ + P
Sbjct: 251 TLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFDNGFTVLSLGNDEP----- 305
Query: 189 AHTAGCYCIAIDPMGRYFAVGSADSLVS 216
+++DP+G+ G ++ S
Sbjct: 306 -------TLSLDPVGKLVWSGGKNAAAS 326
Score = 40.8 bits (94), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 46/216 (21%), Positives = 89/216 (41%), Gaps = 22/216 (10%)
Query: 15 EYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCW 74
++ H + S+A + T + SGS D T ++W+ E + + GH V + +
Sbjct: 92 DFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWE---NNWALEQTFEGHEHFVMCVAF 148
Query: 75 DPKHADLIATASGDKTVRLWDARSGKCSQQAEL-SGENINITYK-----PDGTHIAVGNR 128
+PK A+ D+TV++W G+ + L +G+ + Y PD ++ +
Sbjct: 149 NPKDPSTFASGCLDRTVKVWSL--GQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASD 206
Query: 129 DDELTILDVRKFKPI-----HRRKFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRP 183
D + I D + + H + V ++ T + + +GT+++ + +
Sbjct: 207 DLTIKIWDYQTKSCVATLEGHMSNVSFAV----FHPTLPIIISGSEDGTLKIWNSSTYKV 262
Query: 184 LDTVVAHTAGCYCIAIDPMGR--YFAVGSADSLVSL 217
T+ +CIA P GR Y A G + L
Sbjct: 263 EKTLNVGLERSWCIATHPTGRKNYIASGFDNGFTVL 298
>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6
pdb|2YNO|B Chain B, Yeast Betaprime Cop 1-304h6
Length = 310
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 41/160 (25%), Positives = 70/160 (43%), Gaps = 7/160 (4%)
Query: 14 REYTGHKKKVHSVAWNCTG-TKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQL 72
+ + GH+ V VA+N + ASG +D+T +VW + G G V+ +
Sbjct: 134 QTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSL---GQSTPNFTLTTGQERGVNYV 190
Query: 73 CWDP-KHADLIATASGDKTVRLWDARSGKCSQQAELSGENINI-TYKPDGTHIAVGNRDD 130
+ P + TAS D T+++WD ++ C E N++ + P I G+ D
Sbjct: 191 DYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDG 250
Query: 131 ELTILDVRKFKPIHRRKFGYEVNE-IAWNMTGEMFFLTTG 169
L I + +K G E + IA + TG ++ +G
Sbjct: 251 TLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASG 290
Score = 42.0 bits (97), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 46/216 (21%), Positives = 89/216 (41%), Gaps = 22/216 (10%)
Query: 15 EYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCW 74
++ H + S+A + T + SGS D T ++W+ E + + GH V + +
Sbjct: 92 DFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWE---NNWALEQTFEGHEHFVMCVAF 148
Query: 75 DPKHADLIATASGDKTVRLWDARSGKCSQQAEL-SGENINITYK-----PDGTHIAVGNR 128
+PK A+ D+TV++W G+ + L +G+ + Y PD ++ +
Sbjct: 149 NPKDPSTFASGCLDRTVKVWSL--GQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASD 206
Query: 129 DDELTILDVRKFKPI-----HRRKFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRP 183
D + I D + + H + V ++ T + + +GT+++ + +
Sbjct: 207 DLTIKIWDYQTKSCVATLEGHMSNVSFAV----FHPTLPIIISGSEDGTLKIWNSSTYKV 262
Query: 184 LDTVVAHTAGCYCIAIDPMGR--YFAVGSADSLVSL 217
T+ +CIA P GR Y A G + L
Sbjct: 263 EKTLNVGLERSWCIATHPTGRKNYIASGFDNGFTVL 298
>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif
Length = 304
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 41/160 (25%), Positives = 70/160 (43%), Gaps = 7/160 (4%)
Query: 14 REYTGHKKKVHSVAWNCTG-TKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQL 72
+ + GH+ V VA+N + ASG +D+T +VW + G G V+ +
Sbjct: 134 QTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSL---GQSTPNFTLTTGQERGVNYV 190
Query: 73 CWDP-KHADLIATASGDKTVRLWDARSGKCSQQAELSGENINI-TYKPDGTHIAVGNRDD 130
+ P + TAS D T+++WD ++ C E N++ + P I G+ D
Sbjct: 191 DYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDG 250
Query: 131 ELTILDVRKFKPIHRRKFGYEVNE-IAWNMTGEMFFLTTG 169
L I + +K G E + IA + TG ++ +G
Sbjct: 251 TLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASG 290
Score = 42.0 bits (97), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 46/216 (21%), Positives = 89/216 (41%), Gaps = 22/216 (10%)
Query: 15 EYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCW 74
++ H + S+A + T + SGS D T ++W+ E + + GH V + +
Sbjct: 92 DFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWE---NNWALEQTFEGHEHFVMCVAF 148
Query: 75 DPKHADLIATASGDKTVRLWDARSGKCSQQAEL-SGENINITYK-----PDGTHIAVGNR 128
+PK A+ D+TV++W G+ + L +G+ + Y PD ++ +
Sbjct: 149 NPKDPSTFASGCLDRTVKVWSL--GQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASD 206
Query: 129 DDELTILDVRKFKPI-----HRRKFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRP 183
D + I D + + H + V ++ T + + +GT+++ + +
Sbjct: 207 DLTIKIWDYQTKSCVATLEGHMSNVSFAV----FHPTLPIIISGSEDGTLKIWNSSTYKV 262
Query: 184 LDTVVAHTAGCYCIAIDPMGR--YFAVGSADSLVSL 217
T+ +CIA P GR Y A G + L
Sbjct: 263 EKTLNVGLERSWCIATHPTGRKNYIASGFDNGFTVL 298
>pdb|3JRO|A Chain A, Nup84-Nup145c-Sec13 Edge Element Of The Npc Lattice
Length = 753
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 36/149 (24%), Positives = 71/149 (47%), Gaps = 11/149 (7%)
Query: 18 GHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCW-DP 76
H + +H + G +LA+ S D+T +++ +E H + L GH V ++ W P
Sbjct: 7 AHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLID--TLTGHEGPVWRVDWAHP 64
Query: 77 KHADLIATASGDKTVRLWDARSGKCSQQA--ELSGENIN-ITYKPD--GTHIAVGNRDDE 131
K ++A+ S D V +W +G+ SQ A + ++N + + P G + V + D +
Sbjct: 65 KFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGK 124
Query: 132 LTILDVRK---FKPIHRRKFGYEVNEIAW 157
+++++ ++ PI VN +W
Sbjct: 125 VSVVEFKENGTTSPIIIDAHAIGVNSASW 153
Score = 34.7 bits (78), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 27/63 (42%), Gaps = 2/63 (3%)
Query: 34 KLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPK--HADLIATASGDKTV 91
K +G D ++W V + L GH+D V + W P +A+ S D+T
Sbjct: 172 KFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTC 231
Query: 92 RLW 94
+W
Sbjct: 232 IIW 234
>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|C Chain C, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|E Chain E, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
Length = 814
Score = 43.5 bits (101), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 49/208 (23%), Positives = 88/208 (42%), Gaps = 20/208 (9%)
Query: 14 REYTGHKKKVHSVAWNCTG-TKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQL 72
+ + GH+ V VA+N + ASG +D+T +VW + G G V+ +
Sbjct: 134 QTFEGHEHFVMCVAFNPKDPSTFASGCLDRTVKVWSL---GQSTPNFTLTTGQERGVNYV 190
Query: 73 CWDP-KHADLIATASGDKTVRLWDARSGKCSQQAELSGENINI-TYKPDGTHIAVGNRDD 130
+ P + TAS D T+++WD ++ C E N++ + P I G+ D
Sbjct: 191 DYYPLPDKPYMITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPTLPIIISGSEDG 250
Query: 131 ELTILDVRKFKPIHRRKFGYEVNE-IAWNMTGEMFFLTTG-NGTVEVLTYPSLRPLDTVV 188
L I + +K G E + IA + TG ++ +G + VL+ + P
Sbjct: 251 TLKIWNSSTYKVEKTLNVGLERSWCIATHPTGRKNYIASGFDNGFTVLSLGNDEP----- 305
Query: 189 AHTAGCYCIAIDPMGRYFAVGSADSLVS 216
+++DP+G+ G ++ S
Sbjct: 306 -------TLSLDPVGKLVWSGGKNAAAS 326
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 46/216 (21%), Positives = 89/216 (41%), Gaps = 22/216 (10%)
Query: 15 EYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCW 74
++ H + S+A + T + SGS D T ++W+ E + + GH V + +
Sbjct: 92 DFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWE---NNWALEQTFEGHEHFVMCVAF 148
Query: 75 DPKHADLIATASGDKTVRLWDARSGKCSQQAEL-SGENINITY-----KPDGTHIAVGNR 128
+PK A+ D+TV++W G+ + L +G+ + Y PD ++ +
Sbjct: 149 NPKDPSTFASGCLDRTVKVWSL--GQSTPNFTLTTGQERGVNYVDYYPLPDKPYMITASD 206
Query: 129 DDELTILDVRKFKPI-----HRRKFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRP 183
D + I D + + H + V ++ T + + +GT+++ + +
Sbjct: 207 DLTIKIWDYQTKSCVATLEGHMSNVSFAV----FHPTLPIIISGSEDGTLKIWNSSTYKV 262
Query: 184 LDTVVAHTAGCYCIAIDPMGR--YFAVGSADSLVSL 217
T+ +CIA P GR Y A G + L
Sbjct: 263 EKTLNVGLERSWCIATHPTGRKNYIASGFDNGFTVL 298
>pdb|3MMY|A Chain A, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|C Chain C, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|E Chain E, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|G Chain G, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
Length = 368
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/114 (27%), Positives = 50/114 (43%), Gaps = 5/114 (4%)
Query: 32 GTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTV 91
G L +GS R W ++ G K ++ H V +CW + + TAS DKT
Sbjct: 54 GNFLIAGSWANDVRCWEVQDSGQTIPKAQQM--HTGPVLDVCWSDDGSKVF-TASCDKTA 110
Query: 92 RLWDARSGKCSQ--QAELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPI 143
++WD S + Q Q + + I+ P+ + + G+ D L D R P+
Sbjct: 111 KMWDLSSNQAIQIAQHDAPVKTIHWIKAPNYSCVMTGSWDKTLKFWDTRSSNPM 164
Score = 41.6 bits (96), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 41/81 (50%), Gaps = 6/81 (7%)
Query: 19 HKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCW-DPK 77
H V V W+ G+K+ + S D+TA++W + + + I++ H V + W
Sbjct: 85 HTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSN-----QAIQIAQHDAPVKTIHWIKAP 139
Query: 78 HADLIATASGDKTVRLWDARS 98
+ + T S DKT++ WD RS
Sbjct: 140 NYSCVMTGSWDKTLKFWDTRS 160
>pdb|3JRP|A Chain A, Sec13 With Nup145c (Aa109-179) Insertion Blade
Length = 379
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 38/149 (25%), Positives = 73/149 (48%), Gaps = 11/149 (7%)
Query: 18 GHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCW-DP 76
H + +H + G +LA+ S D+T +++ +E H K+ D L GH V ++ W P
Sbjct: 9 AHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETH-KLIDT-LTGHEGPVWRVDWAHP 66
Query: 77 KHADLIATASGDKTVRLWDARSGKCSQQA--ELSGENIN-ITYKPD--GTHIAVGNRDDE 131
K ++A+ S D V +W +G+ SQ A + ++N + + P G + V + D +
Sbjct: 67 KFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGK 126
Query: 132 LTILDVRK---FKPIHRRKFGYEVNEIAW 157
+++++ ++ PI VN +W
Sbjct: 127 VSVVEFKENGTTSPIIIDAHAIGVNSASW 155
Score = 33.5 bits (75), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 27/63 (42%), Gaps = 2/63 (3%)
Query: 34 KLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPK--HADLIATASGDKTV 91
K +G D ++W V + L GH+D V + W P +A+ S D+T
Sbjct: 174 KFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTC 233
Query: 92 RLW 94
+W
Sbjct: 234 IIW 236
>pdb|2PM9|B Chain B, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE
Copii Vesicular Coat
Length = 297
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 37/149 (24%), Positives = 73/149 (48%), Gaps = 11/149 (7%)
Query: 18 GHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCW-DP 76
H + +H + G ++A+ S D+T +++ +E H K+ D L GH V ++ W P
Sbjct: 7 AHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETH-KLIDT-LTGHEGPVWRVDWAHP 64
Query: 77 KHADLIATASGDKTVRLWDARSGKCSQQA--ELSGENIN-ITYKPD--GTHIAVGNRDDE 131
K ++A+ S D V +W +G+ SQ A + ++N + + P G + V + D +
Sbjct: 65 KFGTILASCSYDGKVMIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPMLLVASSDGK 124
Query: 132 LTILDVRK---FKPIHRRKFGYEVNEIAW 157
+++++ ++ PI VN +W
Sbjct: 125 VSVVEFKENGTTSPIIIDAHAIGVNSASW 153
Score = 32.7 bits (73), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 27/63 (42%), Gaps = 2/63 (3%)
Query: 34 KLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPK--HADLIATASGDKTV 91
K +G D ++W V + L GH+D V + W P +A+ S D+T
Sbjct: 172 KFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYMASVSQDRTC 231
Query: 92 RLW 94
+W
Sbjct: 232 IIW 234
>pdb|4E5Z|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein
(Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna
Repair
Length = 436
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 41/84 (48%), Gaps = 3/84 (3%)
Query: 19 HKKKVHSVAWN-CTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPK 77
HKKKV VA N C LA+ SVDQT ++W + GK + H V+ C+ P
Sbjct: 249 HKKKVTHVALNPCCDWFLATASVDQTVKIWDLR-QVRGKASFLYSLPHRHPVNAACFSPD 307
Query: 78 HADLIATASGDKTVRLWDARSGKC 101
A L+ T + +R++ A C
Sbjct: 308 GARLLTTDQKSE-IRVYSASQWDC 330
Score = 35.0 bits (79), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 40/84 (47%), Gaps = 4/84 (4%)
Query: 61 ELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARS--GKCSQQAELSGEN-INIT-Y 116
LR H V + +P +ATAS D+TV++WD R GK S L + +N +
Sbjct: 245 NLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACF 304
Query: 117 KPDGTHIAVGNRDDELTILDVRKF 140
PDG + ++ E+ + ++
Sbjct: 305 SPDGARLLTTDQKSEIRVYSASQW 328
>pdb|4E54|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein
(Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna
Repair
Length = 435
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 41/84 (48%), Gaps = 3/84 (3%)
Query: 19 HKKKVHSVAWN-CTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPK 77
HKKKV VA N C LA+ SVDQT ++W + GK + H V+ C+ P
Sbjct: 249 HKKKVTHVALNPCCDWFLATASVDQTVKIWDLR-QVRGKASFLYSLPHRHPVNAACFSPD 307
Query: 78 HADLIATASGDKTVRLWDARSGKC 101
A L+ T + +R++ A C
Sbjct: 308 GARLLTTDQKSE-IRVYSASQWDC 330
Score = 35.0 bits (79), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 40/84 (47%), Gaps = 4/84 (4%)
Query: 61 ELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARS--GKCSQQAELSGEN-INIT-Y 116
LR H V + +P +ATAS D+TV++WD R GK S L + +N +
Sbjct: 245 NLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACF 304
Query: 117 KPDGTHIAVGNRDDELTILDVRKF 140
PDG + ++ E+ + ++
Sbjct: 305 SPDGARLLTTDQKSEIRVYSASQW 328
>pdb|2PM6|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|2PM6|D Chain D, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|3IKO|A Chain A, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|D Chain D, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|G Chain G, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3MZK|A Chain A, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZK|D Chain D, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZL|A Chain A, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|C Chain C, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|E Chain E, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|G Chain G, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
Length = 297
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/149 (25%), Positives = 73/149 (48%), Gaps = 11/149 (7%)
Query: 18 GHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCW-DP 76
H + +H + G +LA+ S D+T +++ +E H K+ D L GH V ++ W P
Sbjct: 7 AHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETH-KLIDT-LTGHEGPVWRVDWAHP 64
Query: 77 KHADLIATASGDKTVRLWDARSGKCSQQA--ELSGENIN-ITYKPD--GTHIAVGNRDDE 131
K ++A+ S D V +W +G+ SQ A + ++N + + P G + V + D +
Sbjct: 65 KFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSDGK 124
Query: 132 LTILDVRK---FKPIHRRKFGYEVNEIAW 157
+++++ ++ PI VN +W
Sbjct: 125 VSVVEFKENGTTSPIIIDAHAIGVNSASW 153
Score = 32.7 bits (73), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 27/63 (42%), Gaps = 2/63 (3%)
Query: 34 KLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPK--HADLIATASGDKTV 91
K +G D ++W V + L GH+D V + W P +A+ S D+T
Sbjct: 172 KFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYLASVSQDRTC 231
Query: 92 RLW 94
+W
Sbjct: 232 IIW 234
>pdb|3EI4|B Chain B, Structure Of The Hsddb1-Hsddb2 Complex
pdb|3EI4|D Chain D, Structure Of The Hsddb1-Hsddb2 Complex
pdb|3EI4|F Chain F, Structure Of The Hsddb1-Hsddb2 Complex
Length = 436
Score = 42.0 bits (97), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 41/84 (48%), Gaps = 3/84 (3%)
Query: 19 HKKKVHSVAWN-CTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPK 77
HKKKV VA N C LA+ SVDQT ++W + GK + H V+ C+ P
Sbjct: 250 HKKKVTHVALNPCCDWFLATASVDQTVKIWDLR-QVRGKASFLYSLPHRHPVNAACFSPD 308
Query: 78 HADLIATASGDKTVRLWDARSGKC 101
A L+ T + +R++ A C
Sbjct: 309 GARLLTTDQKSE-IRVYSASQWDC 331
Score = 35.0 bits (79), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 40/84 (47%), Gaps = 4/84 (4%)
Query: 61 ELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARS--GKCSQQAELSGEN-INIT-Y 116
LR H V + +P +ATAS D+TV++WD R GK S L + +N +
Sbjct: 246 NLRMHKKKVTHVALNPCCDWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACF 305
Query: 117 KPDGTHIAVGNRDDELTILDVRKF 140
PDG + ++ E+ + ++
Sbjct: 306 SPDGARLLTTDQKSEIRVYSASQW 329
>pdb|1GXR|A Chain A, Wd40 Region Of Human Groucho/tle1
pdb|1GXR|B Chain B, Wd40 Region Of Human Groucho/tle1
pdb|2CE8|A Chain A, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|B Chain B, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|C Chain C, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|D Chain D, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|A Chain A, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|B Chain B, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|C Chain C, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|D Chain D, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain
Length = 337
Score = 42.0 bits (97), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 41/182 (22%), Positives = 72/182 (39%), Gaps = 10/182 (5%)
Query: 41 DQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKH-ADLIATASGDKTVRLWDARSG 99
D VW + H + + +GH D C D + + T D TVR WD R G
Sbjct: 162 DGNIAVWDL----HNQTLVRQFQGHTDGAS--CIDISNDGTKLWTGGLDNTVRSWDLREG 215
Query: 100 KCSQQAELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNM 159
+ QQ + + + ++ Y P G +AVG + +L V K V + +
Sbjct: 216 RQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHLHESCVLSLKFAY 275
Query: 160 TGEMFFLTTGNGTVEVLTYPSLRPLDTVVAHTAGCYC-IAIDPMGRYFAVGSADSLVSLW 218
G+ F T + + P + ++ C I++D +Y GS D +++
Sbjct: 276 CGKWFVSTGKDNLLNAWRTPYGASIFQSKESSSVLSCDISVD--DKYIVTGSGDKKATVY 333
Query: 219 DI 220
++
Sbjct: 334 EV 335
Score = 34.3 bits (77), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 35/145 (24%), Positives = 55/145 (37%), Gaps = 9/145 (6%)
Query: 87 GDKTVRLWD----ARSGKCSQQAELSGENINITYK--PDGTHIAVGNRDDELTILDVRKF 140
G V++WD SQ L+ +N + K PDG + VG L+I D+
Sbjct: 70 GKGCVKVWDISHPGNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAP 129
Query: 141 KPIHRRKF---GYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAHTAGCYCI 197
P + + +A + ++ F +G + V + + HT G CI
Sbjct: 130 TPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCI 189
Query: 198 AIDPMGRYFAVGSADSLVSLWDISE 222
I G G D+ V WD+ E
Sbjct: 190 DISNDGTKLWTGGLDNTVRSWDLRE 214
Score = 30.0 bits (66), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 14/54 (25%), Positives = 24/54 (44%)
Query: 176 LTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTF 229
L P+ R + + CY +AI P + +D +++WD+ VR F
Sbjct: 126 LAAPTPRIKAELTSSAPACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQF 179
>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3MKS|D Chain D, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3V7D|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
pdb|3V7D|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
Length = 464
Score = 40.8 bits (94), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 40/178 (22%), Positives = 69/178 (38%), Gaps = 33/178 (18%)
Query: 60 IELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGEN-----INI 114
++L GH V L + H ++ + S D+TVR+WD + G C+ E G N ++I
Sbjct: 156 LQLSGHDGGVWALKY--AHGGILVSGSTDRTVRVWDIKKGCCTHVFE--GHNSTVRCLDI 211
Query: 115 TYKPDGTHIAVGNRDDELTILDVRKFK--PIHRRKFGYEVNEIAWNMTGEMFFLTTGNGT 172
+ +I G+RD+ L + + K P H + Y +
Sbjct: 212 VEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPL-------------------- 251
Query: 173 VEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFT 230
V P P V + G GS D+ + +WD+++M C+ +
Sbjct: 252 --VFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVAQMKCLYILS 307
Score = 40.4 bits (93), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 37/131 (28%), Positives = 63/131 (48%), Gaps = 14/131 (10%)
Query: 17 TGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDP 76
+GH +++S ++ + S S+D T R+W +E +G++ L+GH V L
Sbjct: 307 SGHTDRIYSTIYDHERKRCISASMDTTIRIWDLE---NGELM-YTLQGHTALVGLLRLSD 362
Query: 77 KHADLIATASGDKTVRLWDAR--SGKCS-QQAELSGENINITYKPDGTHIAVGNRDDELT 133
K + +A+ D ++R WDA S K S LS I Y D +I V +++
Sbjct: 363 K---FLVSAAADGSIRGWDANDYSRKFSYHHTNLSA--ITTFYVSD--NILVSGSENQFN 415
Query: 134 ILDVRKFKPIH 144
I ++R K +H
Sbjct: 416 IYNLRSGKLVH 426
Score = 36.6 bits (83), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 27/84 (32%), Positives = 43/84 (51%), Gaps = 9/84 (10%)
Query: 18 GHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIE-LRGHADSVDQLCWDP 76
GH V +V+ + G + SGS D T VW + ++K + L GH D + +D
Sbjct: 268 GHMASVRTVSGH--GNIVVSGSYDNTLIVWDV-----AQMKCLYILSGHTDRIYSTIYDH 320
Query: 77 KHADLIATASGDKTVRLWDARSGK 100
+ I+ AS D T+R+WD +G+
Sbjct: 321 ERKRCIS-ASMDTTIRIWDLENGE 343
Score = 31.2 bits (69), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 38/81 (46%), Gaps = 6/81 (7%)
Query: 15 EYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQL-C 73
+ +GH V ++ + G L SGS D+T RVW I+ V GH +V L
Sbjct: 157 QLSGHDGGVWALKY-AHGGILVSGSTDRTVRVWDIKKGCCTHV----FEGHNSTVRCLDI 211
Query: 74 WDPKHADLIATASGDKTVRLW 94
+ K+ I T S D T+ +W
Sbjct: 212 VEYKNIKYIVTGSRDNTLHVW 232
>pdb|2PM7|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Selenomethionine Version
pdb|2PM7|D Chain D, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Selenomethionine Version
Length = 297
Score = 40.8 bits (94), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 37/149 (24%), Positives = 72/149 (48%), Gaps = 11/149 (7%)
Query: 18 GHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCW-DP 76
H + +H + G + A+ S D+T +++ +E H K+ D L GH V ++ W P
Sbjct: 7 AHNEXIHDAVXDYYGKRXATCSSDKTIKIFEVEGETH-KLIDT-LTGHEGPVWRVDWAHP 64
Query: 77 KHADLIATASGDKTVRLWDARSGKCSQQA--ELSGENIN-ITYKPD--GTHIAVGNRDDE 131
K ++A+ S D V +W +G+ SQ A + ++N + + P G + V + D +
Sbjct: 65 KFGTILASCSYDGKVXIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPXLLVASSDGK 124
Query: 132 LTILDVRK---FKPIHRRKFGYEVNEIAW 157
+++++ ++ PI VN +W
Sbjct: 125 VSVVEFKENGTTSPIIIDAHAIGVNSASW 153
Score = 31.2 bits (69), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 26/63 (41%), Gaps = 2/63 (3%)
Query: 34 KLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPK--HADLIATASGDKTV 91
K +G D ++W V + L GH+D V + W P A+ S D+T
Sbjct: 172 KFVTGGADNLVKIWKYNSDAQTYVLESTLEGHSDWVRDVAWSPTVLLRSYXASVSQDRTC 231
Query: 92 RLW 94
+W
Sbjct: 232 IIW 234
>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
pdb|1NEX|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
Length = 464
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/131 (28%), Positives = 62/131 (47%), Gaps = 14/131 (10%)
Query: 17 TGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDP 76
+GH +++S ++ + S S D T R+W +E +G++ L+GH V L
Sbjct: 307 SGHTDRIYSTIYDHERKRCISASXDTTIRIWDLE---NGELX-YTLQGHTALVGLLRLSD 362
Query: 77 KHADLIATASGDKTVRLWDAR--SGKCS-QQAELSGENINITYKPDGTHIAVGNRDDELT 133
K + +A+ D ++R WDA S K S LS I Y D +I V +++
Sbjct: 363 K---FLVSAAADGSIRGWDANDYSRKFSYHHTNLSA--ITTFYVSD--NILVSGSENQFN 415
Query: 134 ILDVRKFKPIH 144
I ++R K +H
Sbjct: 416 IYNLRSGKLVH 426
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 39/174 (22%), Positives = 67/174 (38%), Gaps = 33/174 (18%)
Query: 60 IELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGEN-----INI 114
++L GH V L + H ++ + S D+TVR+WD + G C+ E G N ++I
Sbjct: 156 LQLSGHDGGVWALKY--AHGGILVSGSTDRTVRVWDIKKGCCTHVFE--GHNSTVRCLDI 211
Query: 115 TYKPDGTHIAVGNRDDELTILDVRKFK--PIHRRKFGYEVNEIAWNMTGEMFFLTTGNGT 172
+ +I G+RD+ L + + K P H + Y +
Sbjct: 212 VEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPL-------------------- 251
Query: 173 VEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCV 226
V P P V + G GS D+ + +WD+++ C+
Sbjct: 252 --VFHTPEENPYFVGVLRGHXASVRTVSGHGNIVVSGSYDNTLIVWDVAQXKCL 303
Score = 37.0 bits (84), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 41/83 (49%), Gaps = 7/83 (8%)
Query: 18 GHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPK 77
GH V +V+ + G + SGS D T VW + K I L GH D + +D +
Sbjct: 268 GHXASVRTVSGH--GNIVVSGSYDNTLIVWDV---AQXKCLYI-LSGHTDRIYSTIYDHE 321
Query: 78 HADLIATASGDKTVRLWDARSGK 100
I+ AS D T+R+WD +G+
Sbjct: 322 RKRCIS-ASXDTTIRIWDLENGE 343
Score = 31.2 bits (69), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 38/81 (46%), Gaps = 6/81 (7%)
Query: 15 EYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQL-C 73
+ +GH V ++ + G L SGS D+T RVW I+ V GH +V L
Sbjct: 157 QLSGHDGGVWALKY-AHGGILVSGSTDRTVRVWDIKKGCCTHV----FEGHNSTVRCLDI 211
Query: 74 WDPKHADLIATASGDKTVRLW 94
+ K+ I T S D T+ +W
Sbjct: 212 VEYKNIKYIVTGSRDNTLHVW 232
>pdb|4GQB|B Chain B, Crystal Structure Of The Human Prmt5:mep50 Complex
Length = 344
Score = 38.1 bits (87), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 30/125 (24%), Positives = 54/125 (43%), Gaps = 8/125 (6%)
Query: 19 HKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKH 78
H V +V+ +GT+ SGS D +VW + +V R HA V + P
Sbjct: 126 HDDIVSTVSVLSSGTQAVSGSKDICIKVWDLA----QQVVLSSYRAHAAQVTCVAASPHK 181
Query: 79 ADLIATASGDKTVRLWDARSGKCSQQAELSGEN---INITYKPDGTHIAV-GNRDDELTI 134
+ + S D + LWD R K + Q S ++ + P + + V G+ + +++
Sbjct: 182 DSVFLSCSEDNRILLWDTRCPKPASQIGCSAPGYLPTSLAWHPQQSEVFVFGDENGTVSL 241
Query: 135 LDVRK 139
+D +
Sbjct: 242 VDTKS 246
>pdb|2PM9|A Chain A, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE
Copii Vesicular Coat
Length = 416
Score = 34.7 bits (78), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 45/224 (20%), Positives = 80/224 (35%), Gaps = 22/224 (9%)
Query: 16 YTGHKKKVHSVAWNCTGTK-LASGSVDQTARVWHIE-----PHGHGKVKDIELRGHADSV 69
++ H V +V +N LASG + +W + P + + + D V
Sbjct: 109 FSNHSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESPSNYTPLTPGQSMSSVDEV 168
Query: 70 DQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINIT--------YKPDGT 121
L W+ A + A+A +WD ++ K + N I + + T
Sbjct: 169 ISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNST 228
Query: 122 HIAVG---NRDDELTILDVRKFK-PIHRRKFGYE--VNEIAWNMTGEMFFLTTGNGTVEV 175
+A + D + I D+R P+ G++ + + W E L++G +
Sbjct: 229 RVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHLLLSSGRDNTVL 288
Query: 176 LTYP-SLRPLDTVVAHTAGCYCIAIDPMG-RYFAVGSADSLVSL 217
L P S L A C+ P FA S D+ + +
Sbjct: 289 LWNPESAEQLSQFPARGNWCFKTKFAPEAPDLFACASFDNKIEV 332
>pdb|3DWL|C Chain C, Crystal Structure Of Fission Yeast Arp2/3 Complex Lacking
The Arp2 Subunit
pdb|3DWL|H Chain H, Crystal Structure Of Fission Yeast Arp2/3 Complex Lacking
The Arp2 Subunit
Length = 377
Score = 31.6 bits (70), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 37/82 (45%), Gaps = 2/82 (2%)
Query: 12 HSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQ 71
H+R ++ H K V V W ++ + S D+ A V+ P G K + LR + +
Sbjct: 47 HARTFSDHDKIVTCVDWAPKSNRIVTCSQDRNAYVYEKRPDGTWKQTLVLLRLN-RAATF 105
Query: 72 LCWDPKHADLIATASGDKTVRL 93
+ W P D A SG + + +
Sbjct: 106 VRWSPNE-DKFAVGSGARVISV 126
>pdb|3ACP|A Chain A, Crystal Structure Of Yeast Rpn14, A Chaperone Of The 19s
Reg Particle Of The Proteasome
Length = 417
Score = 31.6 bits (70), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 21/90 (23%), Positives = 42/90 (46%), Gaps = 5/90 (5%)
Query: 10 NLHSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSV 69
NL H ++ + + +G L S S D ++W ++ + + L GH +V
Sbjct: 126 NLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRT----LIGHRATV 181
Query: 70 DQLCWDPKHADLIATASGDKTVRLWDARSG 99
+ + ++++ AS D T+RLW+ +G
Sbjct: 182 TDIAIIDRGRNVLS-ASLDGTIRLWECGTG 210
Score = 28.5 bits (62), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 18/83 (21%), Positives = 36/83 (43%)
Query: 151 EVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGS 210
E+ ++ + +GE ++ + +++ + T++ H A IAI GR S
Sbjct: 138 EITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSAS 197
Query: 211 ADSLVSLWDISEMLCVRTFTKLE 233
D + LW+ + TF + E
Sbjct: 198 LDGTIRLWECGTGTTIHTFNRKE 220
>pdb|3VL1|A Chain A, Crystal Structure Of Yeast Rpn14
pdb|3VL1|B Chain B, Crystal Structure Of Yeast Rpn14
Length = 420
Score = 31.2 bits (69), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 21/90 (23%), Positives = 42/90 (46%), Gaps = 5/90 (5%)
Query: 10 NLHSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSV 69
NL H ++ + + +G L S S D ++W ++ + + L GH +V
Sbjct: 129 NLQREIDQAHVSEITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRT----LIGHRATV 184
Query: 70 DQLCWDPKHADLIATASGDKTVRLWDARSG 99
+ + ++++ AS D T+RLW+ +G
Sbjct: 185 TDIAIIDRGRNVLS-ASLDGTIRLWECGTG 213
Score = 28.9 bits (63), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 18/83 (21%), Positives = 36/83 (43%)
Query: 151 EVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGS 210
E+ ++ + +GE ++ + +++ + T++ H A IAI GR S
Sbjct: 141 EITKLKFFPSGEALISSSQDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVLSAS 200
Query: 211 ADSLVSLWDISEMLCVRTFTKLE 233
D + LW+ + TF + E
Sbjct: 201 LDGTIRLWECGTGTTIHTFNRKE 223
>pdb|3ODT|A Chain A, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
pdb|3ODT|B Chain B, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
Length = 313
Score = 31.2 bits (69), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 39/81 (48%), Gaps = 16/81 (19%)
Query: 18 GHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPK 77
GH+ V S+++ + SGS D+TA+VW G + L+ H SV WD K
Sbjct: 102 GHQGNVCSLSFQ--DGVVISGSWDKTAKVWK-----EGSLV-YNLQAHNASV----WDAK 149
Query: 78 HADL----IATASGDKTVRLW 94
TAS DKT++LW
Sbjct: 150 VVSFSENKFLTASADKTIKLW 170
>pdb|4A08|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 13 Bp Cpd-Duplex (
Purine At D-1 Position) At 3.0 A Resolution (Cpd 1)
pdb|4A09|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 15 Bp Cpd-Duplex
(Purine At D-1 Position) At 3.1 A Resolution (Cpd 2)
pdb|4A0A|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex (
Pyrimidine At D-1 Position) At 3.6 A Resolution (Cpd 3)
pdb|4A0B|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex (
Pyrimidine At D-1 Position) At 3.8 A Resolution (Cpd 4)
pdb|4A0B|D Chain D, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Cpd-Duplex (
Pyrimidine At D-1 Position) At 3.8 A Resolution (Cpd 4)
pdb|4A0K|D Chain D, Structure Of Ddb1-Ddb2-Cul4a-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
pdb|4A0L|B Chain B, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
pdb|4A0L|D Chain D, Structure Of Ddb1-Ddb2-Cul4b-Rbx1 Bound To A 12 Bp Abasic
Site Containing Dna-Duplex
Length = 382
Score = 31.2 bits (69), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 39/75 (52%), Gaps = 5/75 (6%)
Query: 65 HADSVDQLCWDPKHADLIATASGDKTVRLWDARS--GKCSQQAELSGEN-INITY--KPD 119
H V ++P+ L+AT+S D TV+LWD R+ K S AE+ E +N Y D
Sbjct: 202 HKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEMPHEKPVNAAYFNPTD 261
Query: 120 GTHIAVGNRDDELTI 134
T + ++ +E+ +
Sbjct: 262 STKLLTTDQRNEIRV 276
>pdb|3EI1|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 14 Bp 6-4
Photoproduct Containing Dna-Duplex
pdb|3EI2|B Chain B, Structure Of Hsddb1-Drddb2 Bound To A 16 Bp Abasic Site
Containing Dna-Duplex
pdb|3EI3|B Chain B, Structure Of The Hsddb1-Drddb2 Complex
Length = 383
Score = 31.2 bits (69), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 39/75 (52%), Gaps = 5/75 (6%)
Query: 65 HADSVDQLCWDPKHADLIATASGDKTVRLWDARS--GKCSQQAELSGEN-INITY--KPD 119
H V ++P+ L+AT+S D TV+LWD R+ K S AE+ E +N Y D
Sbjct: 203 HKAKVTHAEFNPRCDWLMATSSVDATVKLWDLRNIKDKNSYIAEMPHEKPVNAAYFNPTD 262
Query: 120 GTHIAVGNRDDELTI 134
T + ++ +E+ +
Sbjct: 263 STKLLTTDQRNEIRV 277
>pdb|3JPX|A Chain A, Eed: A Novel Histone Trimethyllysine Binder Within The
Eed-Ezh2 Polycomb Complex
pdb|3JZG|A Chain A, Structure Of Eed In Complex With H3k27me3
pdb|3JZH|A Chain A, Eed-H3k79me3
Length = 402
Score = 30.8 bits (68), Expect = 0.69, Method: Compositional matrix adjust.
Identities = 10/35 (28%), Positives = 24/35 (68%)
Query: 64 GHADSVDQLCWDPKHADLIATASGDKTVRLWDARS 98
GH +++++L + P+ +L+ + S D +RLW+ ++
Sbjct: 149 GHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQT 183
>pdb|3JZN|A Chain A, Structure Of Eed In Apo Form
pdb|3K26|A Chain A, Complex Structure Of Eed And Trimethylated H3k4
pdb|3K27|A Chain A, Complex Structure Of Eed And Trimethylated H3k9
Length = 366
Score = 30.8 bits (68), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 10/35 (28%), Positives = 24/35 (68%)
Query: 64 GHADSVDQLCWDPKHADLIATASGDKTVRLWDARS 98
GH +++++L + P+ +L+ + S D +RLW+ ++
Sbjct: 113 GHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQT 147
>pdb|3IIW|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H3k27 Peptide
Length = 365
Score = 30.8 bits (68), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 10/35 (28%), Positives = 24/35 (68%)
Query: 64 GHADSVDQLCWDPKHADLIATASGDKTVRLWDARS 98
GH +++++L + P+ +L+ + S D +RLW+ ++
Sbjct: 112 GHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQT 146
>pdb|2QXV|A Chain A, Structural Basis Of Ezh2 Recognition By Eed
Length = 361
Score = 30.8 bits (68), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 10/35 (28%), Positives = 24/35 (68%)
Query: 64 GHADSVDQLCWDPKHADLIATASGDKTVRLWDARS 98
GH +++++L + P+ +L+ + S D +RLW+ ++
Sbjct: 108 GHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQT 142
>pdb|3IIY|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H1k26 Peptide
pdb|3IJ0|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H3k9 Peptide
pdb|3IJ1|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H4k20 Peptide
pdb|3IJC|A Chain A, Crystal Structure Of Eed In Complex With Ndsb-195
Length = 365
Score = 30.8 bits (68), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 10/35 (28%), Positives = 24/35 (68%)
Query: 64 GHADSVDQLCWDPKHADLIATASGDKTVRLWDARS 98
GH +++++L + P+ +L+ + S D +RLW+ ++
Sbjct: 112 GHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQT 146
>pdb|4I79|A Chain A, Crystal Structure Of Human Nup43
pdb|4I79|B Chain B, Crystal Structure Of Human Nup43
Length = 399
Score = 30.4 bits (67), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 35/79 (44%), Gaps = 5/79 (6%)
Query: 23 VHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWD--PKHAD 80
+H+V + T L S+ Q ++W G+ + + L G D V C D P
Sbjct: 194 LHAVTFLRTPEILTVNSIGQ-LKIWDFRQQGNEPSQILSLTG--DRVPLHCVDRHPNQQH 250
Query: 81 LIATASGDKTVRLWDARSG 99
++AT D + +WD R G
Sbjct: 251 VVATGGQDGMLSIWDVRQG 269
>pdb|1GZD|A Chain A, Crystal Structure Of Pig Phosphoglucose Isomerase
pdb|1GZV|A Chain A, The Crystal Structure Of Phosphoglucose Isomerase From Pig
Muscle Complexed With 5-Phosphoarabinonate
Length = 557
Score = 29.3 bits (64), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 16/63 (25%), Positives = 30/63 (47%)
Query: 80 DLIATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRDDELTILDVRK 139
+L+ A V L +R + +++ +GE IN T H+A+ NR + ++D +
Sbjct: 57 NLVTEAVMQMLVDLAKSRGVEAARERMFNGEKINFTEDRAVLHVALRNRSNTPILVDGKD 116
Query: 140 FKP 142
P
Sbjct: 117 VMP 119
>pdb|1WMR|A Chain A, Crystal Structure Of Isopullulanase From Aspergillus Niger
Atcc 9642
pdb|1WMR|B Chain B, Crystal Structure Of Isopullulanase From Aspergillus Niger
Atcc 9642
pdb|1X0C|A Chain A, Improved Crystal Structure Of Isopullulanase From
Aspergillus Niger Atcc 9642
pdb|1X0C|B Chain B, Improved Crystal Structure Of Isopullulanase From
Aspergillus Niger Atcc 9642
pdb|2Z8G|A Chain A, Aspergillus Niger Atcc9642 Isopullulanase Complexed With
Isopanose
pdb|2Z8G|B Chain B, Aspergillus Niger Atcc9642 Isopullulanase Complexed With
Isopanose
Length = 549
Score = 29.3 bits (64), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 33/144 (22%), Positives = 58/144 (40%), Gaps = 19/144 (13%)
Query: 16 YTGHKKKV--HSVAW-NCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQL 72
+TGH V SV W G+V+ + ++ GHG + S +Q
Sbjct: 211 FTGHDHMVLSSSVTWVYFAPGAYVKGAVEFLSTASEVKASGHGVL----------SGEQY 260
Query: 73 CW--DPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRDD 130
W DP A+ + + +R+W G SQ L+G + ++ P + GN D
Sbjct: 261 VWYADPDEGYQKASGANNNGLRMWRGTLGNSSQTFVLNG--VTVSAPPFNSMDWSGNSLD 318
Query: 131 ELT--ILDVRKFKPIHRRKFGYEV 152
+T + D ++ + + G E+
Sbjct: 319 LITCRVDDYKQVGAFYGQTDGLEM 342
>pdb|1C5K|A Chain A, The Structure Of Tolb, An Essential Component Of The Tol-
Dependent Translocation System And Its Interactions With
The Translocation Domain Of Colicin E9
pdb|2IVZ|A Chain A, Structure Of Tolb In Complex With A Peptide Of The Colicin
E9 T-Domain
pdb|2IVZ|B Chain B, Structure Of Tolb In Complex With A Peptide Of The Colicin
E9 T-Domain
pdb|2IVZ|C Chain C, Structure Of Tolb In Complex With A Peptide Of The Colicin
E9 T-Domain
pdb|2IVZ|D Chain D, Structure Of Tolb In Complex With A Peptide Of The Colicin
E9 T-Domain
Length = 439
Score = 29.3 bits (64), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 21/104 (20%), Positives = 41/104 (39%)
Query: 21 KKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHAD 80
+ + S AW+ G+KLA + + I+ +G V+ + + D
Sbjct: 201 QPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKLA 260
Query: 81 LIATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDGTHIA 124
+ +G + + D SG+ Q + N T+ PD ++A
Sbjct: 261 FALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLA 304
>pdb|3IAX|A Chain A, The Crystal Structure Of The Tolb Box Of Colicin A In
Complex With Tolb Reveals Important Differences In The
Recruitment Of The Common Tolb Translocation Portal Used
By Group A Colicins
Length = 438
Score = 28.9 bits (63), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 21/104 (20%), Positives = 41/104 (39%)
Query: 21 KKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHAD 80
+ + S AW+ G+KLA + + I+ +G V+ + + D
Sbjct: 200 QPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKLA 259
Query: 81 LIATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDGTHIA 124
+ +G + + D SG+ Q + N T+ PD ++A
Sbjct: 260 FALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLA 303
>pdb|1PI6|A Chain A, Yeast Actin Interacting Protein 1 (Aip1), Orthorhombic
Crystal Form
Length = 615
Score = 28.9 bits (63), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 17/31 (54%)
Query: 82 IATASGDKTVRLWDARSGKCSQQAELSGENI 112
AT D T+R+WD + KC Q+ L + +
Sbjct: 267 FATVGADATIRVWDVTTSKCVQKWTLDKQQL 297
>pdb|1PGU|A Chain A, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein,
Monoclinic Crystal Form
pdb|1PGU|B Chain B, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein,
Monoclinic Crystal Form
Length = 615
Score = 28.9 bits (63), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 17/31 (54%)
Query: 82 IATASGDKTVRLWDARSGKCSQQAELSGENI 112
AT D T+R+WD + KC Q+ L + +
Sbjct: 267 FATVGADATIRVWDVTTSKCVQKWTLDKQQL 297
>pdb|2HQS|A Chain A, Crystal Structure Of TolbPAL COMPLEX
pdb|2HQS|B Chain B, Crystal Structure Of TolbPAL COMPLEX
pdb|2HQS|D Chain D, Crystal Structure Of TolbPAL COMPLEX
pdb|2HQS|F Chain F, Crystal Structure Of TolbPAL COMPLEX
Length = 415
Score = 28.9 bits (63), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 21/104 (20%), Positives = 41/104 (39%)
Query: 21 KKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHAD 80
+ + S AW+ G+KLA + + I+ +G V+ + + D
Sbjct: 179 QPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKLA 238
Query: 81 LIATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDGTHIA 124
+ +G + + D SG+ Q + N T+ PD ++A
Sbjct: 239 FALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLA 282
>pdb|2W8B|B Chain B, Crystal Structure Of Processed Tolb In Complex With Pal
pdb|2W8B|D Chain D, Crystal Structure Of Processed Tolb In Complex With Pal
pdb|2W8B|F Chain F, Crystal Structure Of Processed Tolb In Complex With Pal
Length = 409
Score = 28.9 bits (63), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 21/104 (20%), Positives = 41/104 (39%)
Query: 21 KKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHAD 80
+ + S AW+ G+KLA + + I+ +G V+ + + D
Sbjct: 179 QPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKLA 238
Query: 81 LIATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDGTHIA 124
+ +G + + D SG+ Q + N T+ PD ++A
Sbjct: 239 FALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLA 282
>pdb|2W8B|A Chain A, Crystal Structure Of Processed Tolb In Complex With Pal
Length = 409
Score = 28.9 bits (63), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 21/104 (20%), Positives = 41/104 (39%)
Query: 21 KKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHAD 80
+ + S AW+ G+KLA + + I+ +G V+ + + D
Sbjct: 179 QPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKLA 238
Query: 81 LIATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDGTHIA 124
+ +G + + D SG+ Q + N T+ PD ++A
Sbjct: 239 FALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLA 282
>pdb|4G56|B Chain B, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
pdb|4G56|D Chain D, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
Length = 357
Score = 28.1 bits (61), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 23/125 (18%), Positives = 52/125 (41%), Gaps = 8/125 (6%)
Query: 19 HKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKH 78
H V +++ GT+ SG D + +VW + K H+ V+ + P
Sbjct: 138 HDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLK----SYNAHSSEVNCVAACPGK 193
Query: 79 ADLIATASGDKTVRLWDARSGKCSQQAELSGEN---INITYKPDGTH-IAVGNRDDELTI 134
+ + D + LWD R K + + + + ++T+ P+ A G+ +++
Sbjct: 194 DTIFLSCGEDGRILLWDTRKPKPATRIDFCASDTIPTSVTWHPEKDDTFACGDETGNVSL 253
Query: 135 LDVRK 139
++++
Sbjct: 254 VNIKN 258
>pdb|1CRZ|A Chain A, Crystal Structure Of The E. Coli Tolb Protein
Length = 403
Score = 28.1 bits (61), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 21/104 (20%), Positives = 41/104 (39%)
Query: 21 KKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHAD 80
+ + S AW+ G+KLA + + I+ +G V+ + + D
Sbjct: 173 QPLXSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDGSKLA 232
Query: 81 LIATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDGTHIA 124
+ +G + + D SG+ Q + N T+ PD ++A
Sbjct: 233 FALSKTGSLNLYVXDLASGQIRQVTDGRSNNTEPTWFPDSQNLA 276
>pdb|1ST6|A Chain A, Crystal Structure Of A Cytoskeletal Protein
Length = 1069
Score = 26.9 bits (58), Expect = 9.0, Method: Composition-based stats.
Identities = 23/73 (31%), Positives = 34/73 (46%), Gaps = 7/73 (9%)
Query: 31 TGTKLASGSVDQTARVWHIEPHGHGKVKDIELRG---HADSVDQLCWDPKHADLIATASG 87
T +K A A+ W +P+G G + +RG A V +LC +PK D I + G
Sbjct: 381 TNSKQAIAKKIDAAQNWLADPNG-GSEGEEHIRGIMSEARKVAELCEEPKERDDILRSLG 439
Query: 88 D---KTVRLWDAR 97
+ T +L D R
Sbjct: 440 EISALTAKLSDLR 452
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.134 0.424
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,643,617
Number of Sequences: 62578
Number of extensions: 327440
Number of successful extensions: 1797
Number of sequences better than 100.0: 116
Number of HSP's better than 100.0 without gapping: 92
Number of HSP's successfully gapped in prelim test: 24
Number of HSP's that attempted gapping in prelim test: 946
Number of HSP's gapped (non-prelim): 404
length of query: 233
length of database: 14,973,337
effective HSP length: 96
effective length of query: 137
effective length of database: 8,965,849
effective search space: 1228321313
effective search space used: 1228321313
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.9 bits)