Query 026765
Match_columns 233
No_of_seqs 183 out of 1338
Neff 10.9
Searched_HMMs 46136
Date Fri Mar 29 12:22:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026765.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026765hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1407 WD40 repeat protein [F 100.0 6.5E-42 1.4E-46 246.0 19.0 230 2-233 2-231 (313)
2 KOG0272 U4/U6 small nuclear ri 100.0 4.5E-40 9.8E-45 250.1 15.3 217 12-233 209-430 (459)
3 KOG0272 U4/U6 small nuclear ri 100.0 1.4E-39 2.9E-44 247.5 17.4 211 18-232 173-386 (459)
4 KOG0315 G-protein beta subunit 100.0 5.2E-37 1.1E-41 219.5 23.9 215 12-232 75-299 (311)
5 KOG0263 Transcription initiati 100.0 5.6E-38 1.2E-42 254.5 20.4 206 13-223 444-651 (707)
6 KOG0271 Notchless-like WD40 re 100.0 4.6E-37 9.9E-42 231.5 19.6 214 14-232 109-408 (480)
7 KOG0271 Notchless-like WD40 re 100.0 1E-36 2.2E-41 229.7 18.3 229 2-232 135-450 (480)
8 KOG0279 G protein beta subunit 100.0 4.5E-35 9.8E-40 212.5 24.2 218 13-231 8-232 (315)
9 KOG0286 G-protein beta subunit 100.0 6.6E-35 1.4E-39 212.9 22.7 202 13-219 138-343 (343)
10 KOG0279 G protein beta subunit 100.0 7.6E-35 1.6E-39 211.3 22.7 211 13-230 56-271 (315)
11 KOG0286 G-protein beta subunit 100.0 8.6E-33 1.9E-37 201.9 25.0 214 12-231 47-269 (343)
12 KOG0266 WD40 repeat-containing 100.0 4.2E-33 9.1E-38 228.1 25.6 217 12-232 195-420 (456)
13 KOG0319 WD40-repeat-containing 100.0 8E-34 1.7E-38 229.0 20.5 225 9-233 354-589 (775)
14 KOG0263 Transcription initiati 100.0 7.9E-34 1.7E-38 230.5 19.7 217 15-232 373-618 (707)
15 KOG0265 U5 snRNP-specific prot 100.0 4.9E-33 1.1E-37 203.8 21.7 215 14-232 41-261 (338)
16 KOG0315 G-protein beta subunit 100.0 2.1E-32 4.6E-37 195.9 24.1 218 2-223 18-247 (311)
17 KOG0285 Pleiotropic regulator 100.0 1.7E-33 3.8E-38 210.7 19.0 213 14-232 145-359 (460)
18 KOG0645 WD40 repeat protein [G 100.0 7.6E-32 1.6E-36 195.1 25.4 210 10-221 4-225 (312)
19 PTZ00421 coronin; Provisional 100.0 1.8E-31 3.8E-36 218.5 30.3 216 14-229 69-298 (493)
20 KOG0266 WD40 repeat-containing 100.0 5.1E-32 1.1E-36 221.8 27.2 217 13-232 151-375 (456)
21 KOG0282 mRNA splicing factor [ 100.0 6.1E-34 1.3E-38 220.0 13.5 217 12-232 206-473 (503)
22 KOG0278 Serine/threonine kinas 100.0 2.6E-33 5.6E-38 200.9 15.5 201 18-223 98-299 (334)
23 KOG0295 WD40 repeat-containing 100.0 7.5E-33 1.6E-37 207.4 18.1 216 13-232 143-375 (406)
24 KOG0293 WD40 repeat-containing 100.0 1E-32 2.2E-37 209.9 19.0 215 4-222 210-514 (519)
25 KOG0273 Beta-transducin family 100.0 4.9E-32 1.1E-36 209.0 22.7 214 12-231 268-492 (524)
26 PTZ00420 coronin; Provisional 100.0 2.8E-30 6.1E-35 212.8 31.2 214 11-224 65-296 (568)
27 KOG0316 Conserved WD40 repeat- 100.0 1.7E-31 3.7E-36 190.0 20.6 219 8-231 5-267 (307)
28 KOG1446 Histone H3 (Lys4) meth 100.0 3.4E-30 7.3E-35 190.1 25.5 217 13-231 7-272 (311)
29 KOG0265 U5 snRNP-specific prot 100.0 3.4E-31 7.3E-36 194.2 20.0 214 15-232 85-307 (338)
30 KOG0284 Polyadenylation factor 100.0 1E-32 2.2E-37 209.4 11.9 208 20-232 96-305 (464)
31 KOG0284 Polyadenylation factor 100.0 2.8E-32 6E-37 207.1 13.0 202 15-221 174-380 (464)
32 KOG0643 Translation initiation 100.0 5E-30 1.1E-34 185.5 23.8 211 15-230 5-229 (327)
33 cd00200 WD40 WD40 domain, foun 100.0 1.4E-29 3.1E-34 194.5 28.1 212 14-230 3-216 (289)
34 KOG0283 WD40 repeat-containing 100.0 4.7E-31 1E-35 215.8 20.6 216 14-231 260-542 (712)
35 KOG0291 WD40-repeat-containing 100.0 3.7E-30 8.1E-35 208.5 25.3 212 14-230 344-559 (893)
36 PLN00181 protein SPA1-RELATED; 100.0 1.1E-29 2.4E-34 221.3 30.0 215 16-232 479-707 (793)
37 KOG0640 mRNA cleavage stimulat 100.0 6.8E-31 1.5E-35 193.8 18.0 218 14-232 106-346 (430)
38 KOG0292 Vesicle coat complex C 100.0 8.9E-31 1.9E-35 215.4 19.4 214 12-230 43-289 (1202)
39 KOG0273 Beta-transducin family 100.0 6.2E-30 1.3E-34 197.4 21.7 206 20-232 235-451 (524)
40 KOG0282 mRNA splicing factor [ 100.0 3E-31 6.5E-36 205.2 14.3 202 12-219 250-503 (503)
41 KOG0281 Beta-TrCP (transducin 100.0 8.9E-32 1.9E-36 201.2 10.7 216 3-233 177-400 (499)
42 KOG0318 WD40 repeat stress pro 100.0 4.6E-29 1E-33 195.0 24.7 204 18-222 233-561 (603)
43 KOG0283 WD40 repeat-containing 100.0 8E-30 1.7E-34 208.7 20.8 210 7-222 356-577 (712)
44 PLN00181 protein SPA1-RELATED; 100.0 1.6E-28 3.5E-33 214.1 29.2 203 19-226 531-743 (793)
45 KOG0313 Microtubule binding pr 100.0 3E-29 6.6E-34 189.1 20.7 202 17-221 190-418 (423)
46 cd00200 WD40 WD40 domain, foun 100.0 1.1E-27 2.3E-32 184.0 29.0 214 13-231 44-259 (289)
47 KOG0318 WD40 repeat stress pro 100.0 2E-28 4.3E-33 191.5 24.5 214 13-230 52-274 (603)
48 KOG0313 Microtubule binding pr 100.0 5.2E-29 1.1E-33 187.8 19.6 223 8-232 132-388 (423)
49 KOG0319 WD40-repeat-containing 100.0 6.2E-29 1.3E-33 200.9 19.2 209 11-220 402-618 (775)
50 KOG0645 WD40 repeat protein [G 100.0 5.8E-28 1.3E-32 175.0 21.9 202 13-221 98-311 (312)
51 KOG0277 Peroxisomal targeting 100.0 5.1E-29 1.1E-33 179.1 15.5 211 6-220 90-308 (311)
52 KOG0647 mRNA export protein (c 100.0 5E-28 1.1E-32 177.8 20.5 212 18-232 25-292 (347)
53 KOG0288 WD40 repeat protein Ti 100.0 1.5E-28 3.2E-33 187.1 16.0 212 12-230 211-426 (459)
54 KOG0291 WD40-repeat-containing 100.0 6.2E-27 1.3E-31 190.0 26.2 217 14-233 139-392 (893)
55 KOG0277 Peroxisomal targeting 100.0 2.1E-28 4.6E-33 175.9 15.9 201 20-223 60-267 (311)
56 KOG0285 Pleiotropic regulator 100.0 3.7E-28 8E-33 182.3 17.7 211 12-229 185-397 (460)
57 KOG0296 Angio-associated migra 100.0 6.8E-27 1.5E-31 175.7 24.4 203 13-221 99-398 (399)
58 KOG0276 Vesicle coat complex C 100.0 4.8E-28 1E-32 193.0 19.0 208 12-224 47-260 (794)
59 KOG0281 Beta-TrCP (transducin 100.0 3E-29 6.6E-34 187.7 11.0 196 14-224 231-431 (499)
60 KOG0295 WD40 repeat-containing 100.0 2.3E-27 5E-32 178.1 20.9 204 12-220 185-405 (406)
61 KOG0296 Angio-associated migra 100.0 1.3E-26 2.7E-31 174.2 24.7 214 13-232 57-367 (399)
62 KOG0274 Cdc4 and related F-box 100.0 2E-27 4.3E-32 195.3 22.4 206 14-231 242-451 (537)
63 KOG0310 Conserved WD40 repeat- 100.0 2.9E-27 6.3E-32 183.4 21.8 201 14-220 104-308 (487)
64 KOG0310 Conserved WD40 repeat- 100.0 9.6E-28 2.1E-32 186.0 19.1 211 14-229 62-276 (487)
65 KOG0643 Translation initiation 100.0 1.9E-27 4E-32 172.2 19.0 210 14-224 46-320 (327)
66 PTZ00420 coronin; Provisional 100.0 3.7E-26 8.1E-31 188.5 27.8 188 38-229 50-257 (568)
67 KOG0294 WD40 repeat-containing 100.0 1.3E-26 2.8E-31 171.3 21.6 203 14-223 77-283 (362)
68 KOG1332 Vesicle coat complex C 100.0 5.2E-28 1.1E-32 173.0 13.4 207 14-221 5-241 (299)
69 KOG0641 WD40 repeat protein [G 100.0 7.5E-26 1.6E-30 160.8 23.4 207 14-221 83-303 (350)
70 KOG0772 Uncharacterized conser 100.0 3.1E-27 6.8E-32 184.6 17.4 219 12-230 159-454 (641)
71 KOG0264 Nucleosome remodeling 100.0 1.4E-26 3.1E-31 178.1 20.1 209 14-222 171-405 (422)
72 KOG0276 Vesicle coat complex C 100.0 1.3E-26 2.9E-31 184.8 19.6 210 12-225 89-302 (794)
73 KOG2096 WD40 repeat protein [G 100.0 1.6E-26 3.5E-31 171.3 18.5 207 14-221 80-308 (420)
74 KOG1036 Mitotic spindle checkp 100.0 4.7E-26 1E-30 167.8 20.6 206 18-232 52-273 (323)
75 PTZ00421 coronin; Provisional 100.0 2.1E-25 4.6E-30 182.9 26.6 218 7-224 5-248 (493)
76 KOG0973 Histone transcription 99.9 5.2E-26 1.1E-30 190.9 22.1 211 15-226 64-317 (942)
77 KOG0289 mRNA splicing factor [ 99.9 3.7E-26 8.1E-31 175.2 19.4 206 20-230 219-428 (506)
78 KOG1407 WD40 repeat protein [F 99.9 1.3E-25 2.8E-30 162.2 20.7 210 15-230 59-270 (313)
79 KOG0305 Anaphase promoting com 99.9 7.7E-26 1.7E-30 180.6 20.5 205 12-222 251-462 (484)
80 KOG0268 Sof1-like rRNA process 99.9 3.9E-27 8.5E-32 177.0 12.2 203 15-224 61-305 (433)
81 KOG0288 WD40 repeat protein Ti 99.9 1.7E-26 3.8E-31 175.9 15.7 197 14-218 255-458 (459)
82 KOG0275 Conserved WD40 repeat- 99.9 6.7E-27 1.5E-31 174.0 12.4 224 8-232 200-478 (508)
83 KOG0306 WD40-repeat-containing 99.9 1.3E-25 2.9E-30 182.3 20.5 213 14-227 448-670 (888)
84 KOG1446 Histone H3 (Lys4) meth 99.9 7.1E-25 1.5E-29 162.1 22.4 205 9-222 89-304 (311)
85 KOG0289 mRNA splicing factor [ 99.9 5.9E-25 1.3E-29 168.6 21.5 203 13-220 254-461 (506)
86 KOG2445 Nuclear pore complex c 99.9 1.7E-24 3.7E-29 159.7 22.9 206 16-222 9-257 (361)
87 KOG0306 WD40-repeat-containing 99.9 2E-25 4.4E-30 181.2 19.8 220 11-232 364-633 (888)
88 KOG4283 Transcription-coupled 99.9 2.7E-25 5.9E-30 163.3 18.3 213 17-229 40-285 (397)
89 KOG0292 Vesicle coat complex C 99.9 1.6E-25 3.5E-30 184.8 18.3 203 16-223 5-238 (1202)
90 KOG0308 Conserved WD40 repeat- 99.9 3.5E-26 7.5E-31 183.0 14.0 214 18-232 19-254 (735)
91 KOG0274 Cdc4 and related F-box 99.9 8.2E-25 1.8E-29 180.0 22.5 204 19-232 207-412 (537)
92 KOG0640 mRNA cleavage stimulat 99.9 2.5E-25 5.5E-30 164.5 17.1 211 8-221 160-426 (430)
93 KOG0646 WD40 repeat protein [G 99.9 2.8E-25 6.1E-30 171.6 18.0 207 19-230 80-316 (476)
94 KOG0308 Conserved WD40 repeat- 99.9 1.5E-25 3.3E-30 179.4 16.6 218 10-229 63-294 (735)
95 KOG1273 WD40 repeat protein [G 99.9 1.8E-24 3.9E-29 160.2 20.2 209 7-222 8-227 (405)
96 KOG0772 Uncharacterized conser 99.9 1.7E-25 3.7E-30 175.0 15.5 201 17-219 265-485 (641)
97 KOG0269 WD40 repeat-containing 99.9 1.6E-25 3.5E-30 182.2 13.5 208 23-231 90-307 (839)
98 KOG0294 WD40 repeat-containing 99.9 6.2E-24 1.3E-28 157.2 20.1 212 12-232 35-248 (362)
99 KOG1332 Vesicle coat complex C 99.9 1.5E-24 3.2E-29 155.4 16.3 209 11-221 47-286 (299)
100 KOG0269 WD40 repeat-containing 99.9 6E-25 1.3E-29 178.9 16.2 209 9-221 122-340 (839)
101 KOG0264 Nucleosome remodeling 99.9 2.2E-24 4.8E-29 166.1 17.8 208 17-224 121-350 (422)
102 KOG0275 Conserved WD40 repeat- 99.9 1.1E-25 2.4E-30 167.6 10.0 200 15-219 258-507 (508)
103 KOG0278 Serine/threonine kinas 99.9 2.1E-25 4.6E-30 160.4 10.1 208 14-229 53-262 (334)
104 KOG0300 WD40 repeat-containing 99.9 1.9E-24 4E-29 160.6 14.6 207 12-224 140-389 (481)
105 KOG0316 Conserved WD40 repeat- 99.9 1.1E-23 2.4E-28 150.4 17.8 207 6-218 45-296 (307)
106 KOG0270 WD40 repeat-containing 99.9 1.1E-23 2.3E-28 162.1 17.3 192 32-224 192-407 (463)
107 KOG0299 U3 snoRNP-associated p 99.9 1.4E-23 3E-28 162.1 17.8 201 17-223 199-412 (479)
108 KOG0267 Microtubule severing p 99.9 2.4E-25 5.3E-30 180.0 8.5 210 14-228 22-233 (825)
109 KOG0268 Sof1-like rRNA process 99.9 8.1E-24 1.8E-28 159.2 15.3 210 13-224 102-348 (433)
110 KOG0302 Ribosome Assembly prot 99.9 4.9E-23 1.1E-27 155.7 18.9 213 8-221 140-378 (440)
111 KOG0639 Transducin-like enhanc 99.9 3.2E-24 6.9E-29 167.6 12.8 200 15-220 504-703 (705)
112 KOG0270 WD40 repeat-containing 99.9 1.9E-23 4.1E-28 160.7 16.1 205 17-226 240-454 (463)
113 KOG0647 mRNA export protein (c 99.9 9.9E-23 2.1E-27 150.1 18.9 191 14-209 66-311 (347)
114 KOG2055 WD40 repeat protein [G 99.9 2.1E-22 4.6E-27 155.8 21.5 202 20-223 213-419 (514)
115 KOG0267 Microtubule severing p 99.9 9.8E-25 2.1E-29 176.6 8.8 194 15-213 65-260 (825)
116 KOG0303 Actin-binding protein 99.9 1.8E-22 3.9E-27 153.6 19.2 218 14-231 75-308 (472)
117 KOG0300 WD40 repeat-containing 99.9 2E-22 4.4E-27 149.8 16.6 208 12-222 182-429 (481)
118 KOG0299 U3 snoRNP-associated p 99.9 4.4E-22 9.5E-27 153.9 17.8 216 13-231 135-366 (479)
119 KOG0973 Histone transcription 99.9 5.7E-22 1.2E-26 166.8 19.9 206 14-224 123-358 (942)
120 KOG0305 Anaphase promoting com 99.9 1.8E-21 4E-26 155.7 21.8 206 19-232 216-430 (484)
121 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 2.5E-20 5.3E-25 145.3 27.9 211 13-229 24-245 (300)
122 KOG0307 Vesicle coat complex C 99.9 3.3E-23 7.1E-28 175.1 11.9 212 20-231 64-294 (1049)
123 KOG0302 Ribosome Assembly prot 99.9 6.4E-22 1.4E-26 149.8 17.2 206 12-219 203-436 (440)
124 KOG0639 Transducin-like enhanc 99.9 9.7E-23 2.1E-27 159.4 13.2 208 19-230 464-672 (705)
125 KOG1274 WD40 repeat protein [G 99.9 1E-20 2.3E-25 156.9 24.9 204 18-222 11-263 (933)
126 KOG0641 WD40 repeat protein [G 99.9 2.9E-20 6.3E-25 132.5 23.0 202 14-221 130-349 (350)
127 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 3.8E-20 8.2E-25 144.3 26.1 193 32-230 1-196 (300)
128 KOG0301 Phospholipase A2-activ 99.9 2.4E-21 5.2E-26 156.5 19.4 197 12-223 93-290 (745)
129 KOG2445 Nuclear pore complex c 99.9 8.8E-21 1.9E-25 140.3 20.2 207 14-221 53-318 (361)
130 KOG0321 WD40 repeat-containing 99.9 2.1E-21 4.5E-26 155.6 17.3 209 14-224 94-350 (720)
131 KOG0646 WD40 repeat protein [G 99.9 2.6E-21 5.7E-26 149.8 17.0 192 14-205 117-333 (476)
132 KOG0642 Cell-cycle nuclear pro 99.9 6.3E-22 1.4E-26 156.4 13.7 218 12-231 336-571 (577)
133 KOG4328 WD40 protein [Function 99.9 6E-21 1.3E-25 147.6 17.8 208 14-221 180-399 (498)
134 KOG1036 Mitotic spindle checkp 99.9 3.9E-20 8.3E-25 136.8 21.2 195 20-223 13-209 (323)
135 KOG1408 WD40 repeat protein [F 99.9 3.7E-21 8E-26 156.3 15.9 203 18-224 457-716 (1080)
136 KOG0301 Phospholipase A2-activ 99.9 1.1E-20 2.4E-25 152.6 18.2 212 3-229 34-255 (745)
137 KOG2106 Uncharacterized conser 99.9 3.5E-19 7.6E-24 139.6 23.7 194 20-224 246-480 (626)
138 KOG0307 Vesicle coat complex C 99.9 1.9E-21 4.2E-26 164.5 11.7 210 13-224 109-330 (1049)
139 KOG0650 WD40 repeat nucleolar 99.9 1.1E-19 2.4E-24 145.0 20.9 212 6-223 386-639 (733)
140 KOG4283 Transcription-coupled 99.9 4E-20 8.6E-25 136.3 16.1 170 63-232 40-231 (397)
141 KOG1539 WD repeat protein [Gen 99.9 1.3E-19 2.9E-24 149.2 20.1 198 20-223 448-650 (910)
142 KOG2048 WD40 repeat protein [G 99.9 1E-18 2.2E-23 141.1 23.9 213 14-232 19-244 (691)
143 KOG1063 RNA polymerase II elon 99.9 5E-20 1.1E-24 148.9 16.4 214 14-228 355-657 (764)
144 KOG0321 WD40 repeat-containing 99.8 4.7E-20 1E-24 147.9 15.2 222 2-225 120-395 (720)
145 KOG1538 Uncharacterized conser 99.8 3.7E-19 8E-24 144.0 20.1 207 13-221 46-293 (1081)
146 KOG2106 Uncharacterized conser 99.8 1.5E-18 3.3E-23 136.1 22.7 199 18-221 285-521 (626)
147 KOG0290 Conserved WD40 repeat- 99.8 1.4E-19 3.1E-24 133.1 15.5 204 18-223 94-320 (364)
148 KOG1539 WD repeat protein [Gen 99.8 2.1E-19 4.5E-24 148.0 18.1 162 67-229 449-614 (910)
149 KOG1274 WD40 repeat protein [G 99.8 9.7E-19 2.1E-23 145.4 21.0 192 16-216 92-295 (933)
150 KOG1273 WD40 repeat protein [G 99.8 8.5E-19 1.8E-23 130.4 17.7 213 13-231 58-290 (405)
151 KOG0771 Prolactin regulatory e 99.8 2.4E-19 5.2E-24 137.6 15.1 193 24-222 148-355 (398)
152 KOG4328 WD40 protein [Function 99.8 1.3E-18 2.9E-23 134.7 15.7 208 14-221 228-495 (498)
153 KOG4378 Nuclear protein COP1 [ 99.8 3.4E-18 7.5E-23 134.0 18.0 186 14-203 115-305 (673)
154 KOG2048 WD40 repeat protein [G 99.8 2.7E-17 5.8E-22 133.0 22.9 203 14-223 62-277 (691)
155 PRK01742 tolB translocation pr 99.8 1.8E-17 3.9E-22 135.6 22.4 209 13-231 196-413 (429)
156 KOG1034 Transcriptional repres 99.8 4.6E-18 1E-22 127.0 17.1 200 18-221 87-383 (385)
157 KOG4378 Nuclear protein COP1 [ 99.8 2.4E-18 5.2E-23 134.9 15.5 201 24-230 83-290 (673)
158 KOG0293 WD40 repeat-containing 99.8 1.6E-18 3.4E-23 133.0 14.1 163 62-226 220-389 (519)
159 KOG1063 RNA polymerase II elon 99.8 3.5E-18 7.7E-23 138.4 16.6 202 15-221 520-763 (764)
160 KOG1009 Chromatin assembly com 99.8 1.3E-17 2.9E-22 127.5 17.7 210 13-223 58-374 (434)
161 KOG1310 WD40 repeat protein [G 99.8 4.8E-18 1E-22 134.7 15.3 214 13-229 43-311 (758)
162 KOG1408 WD40 repeat protein [F 99.8 1.5E-17 3.2E-22 135.6 18.2 215 17-232 366-682 (1080)
163 COG2319 FOG: WD40 repeat [Gene 99.8 1.7E-15 3.8E-20 122.1 28.9 209 12-224 147-362 (466)
164 KOG1007 WD repeat protein TSSC 99.8 2.3E-17 5.1E-22 121.4 14.8 210 11-223 54-291 (370)
165 KOG0649 WD40 repeat protein [G 99.8 3.1E-17 6.7E-22 118.2 15.1 181 21-232 11-197 (325)
166 KOG1445 Tumor-specific antigen 99.8 6.9E-18 1.5E-22 136.0 12.8 204 20-223 627-846 (1012)
167 KOG2096 WD40 repeat protein [G 99.8 1E-16 2.2E-21 119.6 18.0 195 17-219 184-400 (420)
168 KOG1524 WD40 repeat-containing 99.8 8.6E-18 1.9E-22 133.0 12.8 183 15-217 99-282 (737)
169 KOG2919 Guanine nucleotide-bin 99.8 1.3E-16 2.8E-21 119.2 17.7 207 19-231 103-338 (406)
170 PRK11028 6-phosphogluconolacto 99.8 1.3E-15 2.7E-20 120.8 24.7 200 21-221 80-304 (330)
171 KOG0322 G-protein beta subunit 99.8 1.7E-17 3.8E-22 120.6 12.4 140 81-220 167-322 (323)
172 KOG1188 WD40 repeat protein [G 99.8 5.6E-17 1.2E-21 121.8 15.4 194 33-230 41-251 (376)
173 KOG2055 WD40 repeat protein [G 99.8 6.6E-17 1.4E-21 125.6 16.3 209 19-230 256-476 (514)
174 KOG2919 Guanine nucleotide-bin 99.8 6.2E-17 1.4E-21 120.9 15.4 190 23-213 161-362 (406)
175 KOG4227 WD40 repeat protein [G 99.8 7.6E-17 1.7E-21 123.4 16.2 212 10-222 46-275 (609)
176 KOG0644 Uncharacterized conser 99.8 7.1E-19 1.5E-23 145.2 5.3 208 13-230 183-435 (1113)
177 KOG0303 Actin-binding protein 99.8 4.1E-17 9E-22 124.6 14.0 163 62-224 77-252 (472)
178 KOG2110 Uncharacterized conser 99.7 2.1E-15 4.5E-20 114.5 22.4 201 19-230 4-213 (391)
179 PRK11028 6-phosphogluconolacto 99.7 5.5E-15 1.2E-19 117.2 25.8 202 19-222 33-259 (330)
180 KOG1007 WD repeat protein TSSC 99.7 4.2E-16 9.2E-21 114.9 17.3 202 18-222 121-362 (370)
181 KOG1523 Actin-related protein 99.7 6.3E-16 1.4E-20 115.3 18.4 207 15-223 5-238 (361)
182 PRK03629 tolB translocation pr 99.7 7.1E-15 1.5E-19 120.2 25.7 209 14-230 192-414 (429)
183 KOG0650 WD40 repeat nucleolar 99.7 9.4E-17 2E-21 128.5 13.6 196 17-218 518-732 (733)
184 KOG3881 Uncharacterized conser 99.7 1.7E-15 3.6E-20 115.7 19.8 202 20-224 105-323 (412)
185 KOG1587 Cytoplasmic dynein int 99.7 1.5E-15 3.2E-20 125.1 20.3 205 19-223 241-474 (555)
186 COG2319 FOG: WD40 repeat [Gene 99.7 2.3E-14 5E-19 115.6 27.0 207 15-225 60-275 (466)
187 KOG1538 Uncharacterized conser 99.7 1.6E-15 3.5E-20 123.2 19.5 201 22-230 14-260 (1081)
188 PF08662 eIF2A: Eukaryotic tra 99.7 4.4E-15 9.6E-20 108.3 19.8 154 71-229 10-186 (194)
189 PRK05137 tolB translocation pr 99.7 1.9E-14 4.1E-19 118.1 25.0 205 13-224 194-415 (435)
190 PRK04922 tolB translocation pr 99.7 1.2E-14 2.6E-19 119.2 23.7 204 13-223 196-413 (433)
191 KOG0649 WD40 repeat protein [G 99.7 1.1E-14 2.4E-19 105.2 20.2 190 20-218 114-313 (325)
192 KOG1188 WD40 repeat protein [G 99.7 4.3E-16 9.3E-21 117.1 13.3 209 12-221 62-346 (376)
193 KOG1009 Chromatin assembly com 99.7 7E-16 1.5E-20 118.2 14.2 185 19-228 12-202 (434)
194 KOG2394 WD40 protein DMR-N9 [G 99.7 1.2E-15 2.6E-20 120.9 15.8 195 31-225 184-456 (636)
195 KOG0642 Cell-cycle nuclear pro 99.7 5.2E-16 1.1E-20 123.3 12.4 213 15-230 289-528 (577)
196 KOG0290 Conserved WD40 repeat- 99.7 6.9E-15 1.5E-19 108.6 16.9 193 17-211 147-356 (364)
197 KOG1034 Transcriptional repres 99.7 3.2E-15 6.9E-20 112.0 14.4 164 10-178 125-382 (385)
198 PRK02889 tolB translocation pr 99.7 1.1E-13 2.4E-18 113.2 23.8 206 14-227 189-408 (427)
199 KOG1240 Protein kinase contain 99.7 4.9E-14 1.1E-18 121.2 22.1 221 9-230 1037-1282(1431)
200 KOG1517 Guanine nucleotide bin 99.7 1.8E-14 3.8E-19 122.3 18.9 206 20-228 1109-1339(1387)
201 KOG1587 Cytoplasmic dynein int 99.7 1.9E-14 4E-19 118.6 18.2 208 17-224 288-519 (555)
202 PRK01742 tolB translocation pr 99.6 3.9E-14 8.5E-19 116.0 19.3 177 41-226 183-366 (429)
203 PF08662 eIF2A: Eukaryotic tra 99.6 1.7E-13 3.7E-18 100.0 20.2 151 24-179 9-179 (194)
204 TIGR02800 propeller_TolB tol-p 99.6 4.1E-13 8.9E-18 109.8 24.6 208 14-229 183-404 (417)
205 KOG1272 WD40-repeat-containing 99.6 1.5E-15 3.3E-20 118.3 8.2 199 23-229 132-331 (545)
206 KOG1517 Guanine nucleotide bin 99.6 2.8E-14 6.1E-19 121.1 16.0 195 24-223 1169-1383(1387)
207 KOG4497 Uncharacterized conser 99.6 1.2E-14 2.6E-19 109.2 12.3 188 23-225 51-244 (447)
208 KOG1963 WD40 repeat protein [G 99.6 2.7E-13 5.9E-18 113.0 21.4 120 18-138 203-322 (792)
209 KOG1334 WD40 repeat protein [G 99.6 6.8E-15 1.5E-19 115.4 9.7 210 14-223 136-468 (559)
210 KOG2110 Uncharacterized conser 99.6 3.5E-12 7.6E-17 97.2 22.7 184 32-224 56-251 (391)
211 PRK00178 tolB translocation pr 99.6 6.1E-12 1.3E-16 103.3 25.6 202 14-222 192-407 (430)
212 KOG2139 WD40 repeat protein [G 99.6 7.4E-13 1.6E-17 100.8 17.7 202 19-223 139-385 (445)
213 KOG1963 WD40 repeat protein [G 99.6 1.1E-12 2.3E-17 109.5 20.1 205 24-231 164-385 (792)
214 KOG0771 Prolactin regulatory e 99.6 9.3E-14 2E-18 107.1 12.9 160 70-231 148-321 (398)
215 KOG1445 Tumor-specific antigen 99.6 3.9E-13 8.5E-18 109.0 16.2 210 14-224 73-296 (1012)
216 KOG2111 Uncharacterized conser 99.5 5.7E-12 1.2E-16 94.4 20.7 201 22-230 7-221 (346)
217 KOG1523 Actin-related protein 99.5 5.9E-13 1.3E-17 99.7 15.4 197 13-212 48-269 (361)
218 PRK04792 tolB translocation pr 99.5 7.7E-12 1.7E-16 102.9 23.6 207 15-229 212-432 (448)
219 KOG0644 Uncharacterized conser 99.5 1.9E-14 4.1E-19 119.5 7.8 205 14-227 226-474 (1113)
220 KOG2139 WD40 repeat protein [G 99.5 1.8E-12 3.9E-17 98.7 17.3 183 20-209 98-298 (445)
221 KOG4227 WD40 repeat protein [G 99.5 1.9E-12 4E-17 99.7 17.0 197 18-222 103-323 (609)
222 KOG1524 WD40 repeat-containing 99.5 3.7E-13 8.1E-18 107.1 13.2 197 18-221 12-216 (737)
223 KOG0322 G-protein beta subunit 99.5 5.1E-13 1.1E-17 97.7 12.6 160 18-178 148-322 (323)
224 KOG2321 WD40 repeat protein [G 99.5 3.3E-12 7.2E-17 102.5 18.3 211 18-231 49-312 (703)
225 KOG1310 WD40 repeat protein [G 99.5 7.9E-14 1.7E-18 111.2 8.6 161 60-221 44-231 (758)
226 PRK03629 tolB translocation pr 99.5 1.7E-11 3.7E-16 100.4 22.3 177 43-225 180-367 (429)
227 PRK02889 tolB translocation pr 99.5 2.2E-11 4.8E-16 99.8 22.6 164 62-226 191-365 (427)
228 PRK04922 tolB translocation pr 99.5 1.1E-11 2.5E-16 101.7 20.7 178 42-226 184-373 (433)
229 PF02239 Cytochrom_D1: Cytochr 99.5 2.2E-10 4.9E-15 91.6 27.1 190 35-229 9-210 (369)
230 KOG0280 Uncharacterized conser 99.5 4.4E-12 9.5E-17 94.1 14.7 200 23-225 124-337 (339)
231 PRK05137 tolB translocation pr 99.5 7.3E-11 1.6E-15 97.1 23.8 175 43-223 183-368 (435)
232 KOG4190 Uncharacterized conser 99.4 3E-13 6.4E-18 108.4 7.7 216 5-224 720-951 (1034)
233 PF10282 Lactonase: Lactonase, 99.4 2.1E-09 4.5E-14 85.8 28.3 201 23-225 89-328 (345)
234 KOG2394 WD40 protein DMR-N9 [G 99.4 2E-11 4.3E-16 97.4 16.3 147 82-228 188-369 (636)
235 PRK01029 tolB translocation pr 99.4 3.5E-10 7.6E-15 92.6 24.2 211 14-228 178-410 (428)
236 TIGR02800 propeller_TolB tol-p 99.4 2.3E-10 5E-15 93.7 23.3 163 62-225 185-358 (417)
237 KOG1354 Serine/threonine prote 99.4 1.5E-11 3.3E-16 93.2 14.2 213 19-233 24-314 (433)
238 KOG2111 Uncharacterized conser 99.4 1.3E-09 2.8E-14 81.9 23.4 157 19-180 93-257 (346)
239 PF02239 Cytochrom_D1: Cytochr 99.4 2.7E-09 5.8E-14 85.5 26.1 211 14-230 30-311 (369)
240 KOG1240 Protein kinase contain 99.4 5.1E-11 1.1E-15 103.1 16.2 170 59-228 1041-1232(1431)
241 KOG2315 Predicted translation 99.4 7.1E-10 1.5E-14 89.0 21.6 198 18-221 163-390 (566)
242 KOG4547 WD40 repeat-containing 99.4 1.8E-10 3.9E-15 92.7 18.2 155 77-233 3-184 (541)
243 KOG2321 WD40 repeat protein [G 99.3 8.1E-11 1.8E-15 94.7 15.9 194 24-223 137-345 (703)
244 KOG4547 WD40 repeat-containing 99.3 3.7E-10 8E-15 91.0 19.2 188 29-222 2-221 (541)
245 PRK00178 tolB translocation pr 99.3 1.5E-09 3.3E-14 89.2 22.1 163 62-225 194-367 (430)
246 PF10282 Lactonase: Lactonase, 99.3 3E-08 6.4E-13 79.2 27.9 199 22-221 38-275 (345)
247 TIGR02658 TTQ_MADH_Hv methylam 99.3 2.3E-08 5.1E-13 78.8 26.3 200 28-231 53-340 (352)
248 PRK04792 tolB translocation pr 99.3 2.6E-09 5.7E-14 88.0 22.1 162 63-225 214-386 (448)
249 KOG1354 Serine/threonine prote 99.3 5E-10 1.1E-14 85.1 16.0 201 20-223 84-361 (433)
250 PLN02919 haloacid dehalogenase 99.3 7.5E-09 1.6E-13 93.1 25.9 199 23-225 626-892 (1057)
251 KOG0974 WD-repeat protein WDR6 99.2 3.1E-10 6.6E-15 96.8 14.4 190 26-223 93-290 (967)
252 KOG1064 RAVE (regulator of V-A 99.2 7.6E-11 1.6E-15 105.5 11.2 197 16-230 2204-2407(2439)
253 KOG3914 WD repeat protein WDR4 99.2 3.1E-10 6.7E-15 87.6 13.0 156 73-230 69-232 (390)
254 PRK01029 tolB translocation pr 99.2 5E-09 1.1E-13 85.8 20.6 183 19-203 229-426 (428)
255 KOG1064 RAVE (regulator of V-A 99.2 1E-10 2.2E-15 104.7 10.6 167 61-232 2203-2377(2439)
256 KOG0974 WD-repeat protein WDR6 99.2 1.9E-10 4.2E-15 98.0 11.5 118 15-138 170-288 (967)
257 PF00400 WD40: WD domain, G-be 99.2 6.7E-11 1.5E-15 63.0 5.4 37 12-48 3-39 (39)
258 KOG1409 Uncharacterized conser 99.2 2.3E-09 5.1E-14 81.5 15.3 204 13-221 17-227 (404)
259 KOG1272 WD40-repeat-containing 99.2 3.8E-11 8.3E-16 94.2 5.9 189 20-219 170-360 (545)
260 PRK04043 tolB translocation pr 99.2 1.1E-07 2.4E-12 77.7 25.9 192 22-222 189-401 (419)
261 KOG0882 Cyclophilin-related pe 99.2 2.5E-10 5.3E-15 89.5 9.1 215 14-232 4-242 (558)
262 PF00400 WD40: WD domain, G-be 99.1 2.1E-10 4.6E-15 61.0 5.9 38 182-219 2-39 (39)
263 KOG4497 Uncharacterized conser 99.1 2.9E-08 6.3E-13 75.4 18.2 201 19-226 90-396 (447)
264 PF15492 Nbas_N: Neuroblastoma 99.1 1.4E-07 3.1E-12 70.4 21.6 196 23-230 46-268 (282)
265 COG2706 3-carboxymuconate cycl 99.1 1.7E-06 3.7E-11 66.6 26.0 204 16-223 35-276 (346)
266 KOG3881 Uncharacterized conser 99.1 3.9E-08 8.4E-13 76.0 17.2 207 19-228 54-284 (412)
267 COG2706 3-carboxymuconate cycl 99.1 8.8E-07 1.9E-11 68.2 24.1 197 24-221 92-321 (346)
268 COG5170 CDC55 Serine/threonine 99.0 7.2E-09 1.6E-13 78.1 12.5 210 19-230 25-319 (460)
269 KOG2041 WD40 repeat protein [G 99.0 8E-09 1.7E-13 85.7 13.6 199 19-218 13-244 (1189)
270 KOG2695 WD40 repeat protein [G 99.0 1.6E-09 3.5E-14 82.4 8.2 147 83-230 228-385 (425)
271 KOG4190 Uncharacterized conser 99.0 1.1E-09 2.5E-14 88.2 7.1 170 59-232 728-917 (1034)
272 KOG4532 WD40-like repeat conta 99.0 3.1E-07 6.8E-12 68.0 18.7 200 25-227 72-288 (344)
273 KOG2041 WD40 repeat protein [G 99.0 1.1E-08 2.4E-13 84.9 11.9 196 11-212 62-279 (1189)
274 PLN02919 haloacid dehalogenase 99.0 1.8E-06 3.8E-11 78.2 26.5 198 24-226 571-838 (1057)
275 COG4946 Uncharacterized protei 98.9 1.3E-06 2.7E-11 69.8 21.2 192 29-226 275-482 (668)
276 KOG3914 WD repeat protein WDR4 98.9 5.3E-08 1.1E-12 75.5 13.4 161 23-186 65-230 (390)
277 KOG1409 Uncharacterized conser 98.9 1.4E-07 3.1E-12 72.0 15.1 201 20-223 68-272 (404)
278 KOG0280 Uncharacterized conser 98.9 1.4E-06 3E-11 65.4 19.5 181 42-223 46-243 (339)
279 COG4946 Uncharacterized protei 98.9 3.9E-06 8.4E-11 67.1 22.6 119 17-141 356-480 (668)
280 PRK04043 tolB translocation pr 98.9 3.7E-06 8E-11 68.8 23.3 155 68-225 189-361 (419)
281 KOG0309 Conserved WD40 repeat- 98.9 2.8E-08 6E-13 82.8 10.6 204 15-222 109-340 (1081)
282 KOG2695 WD40 repeat protein [G 98.9 1E-08 2.2E-13 78.1 7.4 132 19-150 251-388 (425)
283 KOG1832 HIV-1 Vpr-binding prot 98.8 1.9E-09 4.2E-14 91.2 3.3 201 14-232 1095-1302(1516)
284 KOG2315 Predicted translation 98.8 1.2E-06 2.6E-11 71.0 18.0 111 65-179 269-390 (566)
285 PF08450 SGL: SMP-30/Gluconola 98.8 2.4E-05 5.1E-10 59.5 26.6 195 25-230 4-221 (246)
286 KOG0882 Cyclophilin-related pe 98.8 2.2E-07 4.7E-12 73.4 12.5 211 14-231 47-315 (558)
287 KOG0309 Conserved WD40 repeat- 98.8 9.8E-08 2.1E-12 79.6 10.8 209 23-233 70-299 (1081)
288 KOG1334 WD40 repeat protein [G 98.8 5.2E-08 1.1E-12 77.4 8.6 162 61-223 137-314 (559)
289 KOG1912 WD40 repeat protein [G 98.7 4.4E-06 9.4E-11 70.5 19.7 206 13-222 48-305 (1062)
290 PF13360 PQQ_2: PQQ-like domai 98.7 2.5E-05 5.5E-10 58.9 22.8 186 30-227 34-236 (238)
291 PF04762 IKI3: IKI3 family; I 98.7 5.8E-06 1.3E-10 73.7 21.4 199 19-222 74-334 (928)
292 KOG2114 Vacuolar assembly/sort 98.7 5E-06 1.1E-10 70.8 19.6 201 22-230 27-252 (933)
293 PF04762 IKI3: IKI3 family; I 98.7 1.3E-05 2.8E-10 71.5 23.3 199 19-221 119-379 (928)
294 KOG1008 Uncharacterized conser 98.7 5.3E-09 1.2E-13 85.6 1.6 201 19-222 55-276 (783)
295 KOG1275 PAB-dependent poly(A) 98.7 9.9E-07 2.2E-11 75.3 14.5 179 32-219 147-340 (1118)
296 KOG4532 WD40-like repeat conta 98.6 1.5E-05 3.4E-10 59.3 18.1 182 34-223 130-333 (344)
297 KOG1645 RING-finger-containing 98.6 3.1E-06 6.7E-11 66.2 15.0 81 15-100 188-269 (463)
298 PF08450 SGL: SMP-30/Gluconola 98.6 9E-05 1.9E-09 56.4 24.3 178 23-207 42-241 (246)
299 TIGR03300 assembly_YfgL outer 98.6 1.2E-05 2.7E-10 65.1 18.8 145 81-230 192-347 (377)
300 KOG2066 Vacuolar assembly/sort 98.6 2.2E-06 4.7E-11 72.3 14.4 151 66-230 39-196 (846)
301 TIGR02658 TTQ_MADH_Hv methylam 98.6 0.00014 3.1E-09 57.7 23.7 171 42-221 27-223 (352)
302 COG5354 Uncharacterized protei 98.6 2.8E-05 6.1E-10 62.7 19.3 194 21-222 174-396 (561)
303 PF11768 DUF3312: Protein of u 98.5 1.3E-05 2.8E-10 65.7 16.8 109 70-179 209-329 (545)
304 KOG2066 Vacuolar assembly/sort 98.5 1.9E-05 4.2E-10 66.8 18.0 154 15-179 53-233 (846)
305 KOG4714 Nucleoporin [Nuclear s 98.5 1E-06 2.2E-11 65.1 9.4 73 67-139 180-255 (319)
306 COG5354 Uncharacterized protei 98.5 1.8E-05 3.8E-10 63.8 16.7 140 64-213 272-421 (561)
307 PF11768 DUF3312: Protein of u 98.5 1.7E-05 3.8E-10 65.0 16.6 114 108-223 205-331 (545)
308 KOG2314 Translation initiation 98.5 2.3E-05 5E-10 63.9 16.4 177 23-208 213-410 (698)
309 KOG4714 Nucleoporin [Nuclear s 98.5 1.4E-06 2.9E-11 64.5 8.8 74 22-98 181-255 (319)
310 PRK02888 nitrous-oxide reducta 98.5 2E-05 4.3E-10 66.1 16.6 135 87-222 213-405 (635)
311 TIGR03300 assembly_YfgL outer 98.4 0.00014 3E-09 59.0 20.7 187 31-228 64-266 (377)
312 PF13360 PQQ_2: PQQ-like domai 98.4 2.8E-05 6.1E-10 58.6 15.1 142 88-230 2-149 (238)
313 PF07433 DUF1513: Protein of u 98.4 0.00047 1E-08 53.3 23.6 201 23-229 7-255 (305)
314 COG5170 CDC55 Serine/threonine 98.4 6E-06 1.3E-10 62.7 10.5 161 14-177 165-365 (460)
315 COG3391 Uncharacterized conser 98.4 0.00073 1.6E-08 54.9 24.9 202 24-231 77-293 (381)
316 smart00320 WD40 WD40 repeats. 98.3 1.4E-06 3E-11 45.0 4.8 37 12-48 4-40 (40)
317 KOG1275 PAB-dependent poly(A) 98.3 1.8E-05 4E-10 68.0 13.2 146 23-177 180-340 (1118)
318 KOG1920 IkappaB kinase complex 98.3 0.00012 2.6E-09 64.9 18.0 193 21-222 69-323 (1265)
319 PRK02888 nitrous-oxide reducta 98.3 9.2E-05 2E-09 62.3 16.5 123 88-210 295-450 (635)
320 smart00320 WD40 WD40 repeats. 98.3 4.4E-06 9.5E-11 43.0 5.7 38 182-219 3-40 (40)
321 COG0823 TolB Periplasmic compo 98.2 0.00016 3.5E-09 59.1 16.5 156 67-224 193-361 (425)
322 COG0823 TolB Periplasmic compo 98.2 0.00018 3.8E-09 59.0 15.8 186 16-207 188-385 (425)
323 KOG2314 Translation initiation 98.1 5.9E-05 1.3E-09 61.6 11.6 156 69-228 213-388 (698)
324 PF08596 Lgl_C: Lethal giant l 98.1 0.0031 6.6E-08 51.3 22.3 207 22-230 3-299 (395)
325 PF06977 SdiA-regulated: SdiA- 98.1 0.0021 4.6E-08 48.7 19.2 168 60-229 15-208 (248)
326 COG3391 Uncharacterized conser 98.1 0.0024 5.2E-08 51.9 20.0 159 69-227 76-245 (381)
327 KOG4640 Anaphase-promoting com 98.0 2.7E-05 5.9E-10 64.3 8.3 79 149-228 20-99 (665)
328 PF04053 Coatomer_WDAD: Coatom 98.0 0.00099 2.2E-08 54.9 17.4 145 64-222 30-174 (443)
329 KOG1912 WD40 repeat protein [G 98.0 0.00014 3.1E-09 61.7 12.4 116 18-139 405-552 (1062)
330 PF07433 DUF1513: Protein of u 98.0 0.0028 6.2E-08 49.0 18.4 140 70-209 8-180 (305)
331 KOG1645 RING-finger-containing 98.0 2.5E-05 5.3E-10 61.3 7.0 81 61-141 188-269 (463)
332 PF04053 Coatomer_WDAD: Coatom 98.0 0.0018 3.9E-08 53.4 17.9 148 13-179 25-173 (443)
333 PF08553 VID27: VID27 cytoplas 98.0 0.00037 8.1E-09 60.7 14.3 141 78-221 492-647 (794)
334 KOG1008 Uncharacterized conser 97.9 2.2E-06 4.8E-11 70.8 0.5 162 16-179 98-275 (783)
335 PF14783 BBS2_Mid: Ciliary BBS 97.9 0.0018 4E-08 42.1 14.5 97 73-174 9-109 (111)
336 KOG1832 HIV-1 Vpr-binding prot 97.9 8E-06 1.7E-10 70.1 3.5 162 62-232 1097-1266(1516)
337 PF03178 CPSF_A: CPSF A subuni 97.9 0.0073 1.6E-07 47.9 20.6 131 89-222 62-203 (321)
338 KOG3621 WD40 repeat-containing 97.9 0.00064 1.4E-08 57.2 13.5 117 19-139 32-155 (726)
339 KOG2114 Vacuolar assembly/sort 97.9 0.0044 9.5E-08 53.6 18.4 177 15-194 59-259 (933)
340 KOG4649 PQQ (pyrrolo-quinoline 97.8 0.0013 2.9E-08 49.2 13.3 108 121-229 24-131 (354)
341 PRK11138 outer membrane biogen 97.8 0.0046 1E-07 50.5 17.8 145 81-230 207-362 (394)
342 KOG3617 WD40 and TPR repeat-co 97.8 4.9E-05 1.1E-09 65.1 6.3 112 114-226 21-136 (1416)
343 KOG1920 IkappaB kinase complex 97.8 0.0053 1.2E-07 55.0 17.7 153 67-221 69-274 (1265)
344 PF03178 CPSF_A: CPSF A subuni 97.7 0.013 2.9E-07 46.4 22.1 172 42-217 62-261 (321)
345 PF04841 Vps16_N: Vps16, N-ter 97.7 0.017 3.6E-07 47.5 22.2 171 43-229 62-254 (410)
346 KOG3621 WD40 repeat-containing 97.6 0.0004 8.7E-09 58.4 8.9 112 68-180 35-155 (726)
347 KOG4649 PQQ (pyrrolo-quinoline 97.6 0.0084 1.8E-07 45.1 14.8 111 77-188 21-132 (354)
348 KOG3617 WD40 and TPR repeat-co 97.6 0.0019 4.2E-08 55.9 12.6 111 17-136 98-218 (1416)
349 PRK11138 outer membrane biogen 97.6 0.003 6.5E-08 51.6 13.7 133 81-220 258-393 (394)
350 KOG2444 WD40 repeat protein [G 97.6 0.00018 4E-09 52.5 5.7 140 82-223 33-179 (238)
351 KOG4640 Anaphase-promoting com 97.6 0.00073 1.6E-08 56.2 9.6 92 20-117 20-114 (665)
352 PF06433 Me-amine-dh_H: Methyl 97.5 0.031 6.7E-07 44.1 21.8 156 76-232 144-331 (342)
353 PF12894 Apc4_WD40: Anaphase-p 97.4 0.00054 1.2E-08 37.4 4.9 34 191-225 11-44 (47)
354 KOG2395 Protein involved in va 97.4 0.0041 8.9E-08 51.1 11.8 137 81-220 348-499 (644)
355 PRK13616 lipoprotein LpqB; Pro 97.4 0.012 2.5E-07 50.6 15.2 149 67-221 350-525 (591)
356 PHA02713 hypothetical protein; 97.3 0.011 2.4E-07 50.6 13.6 143 79-224 352-536 (557)
357 PRK13616 lipoprotein LpqB; Pro 97.3 0.089 1.9E-06 45.3 18.9 185 21-216 350-563 (591)
358 PF15492 Nbas_N: Neuroblastoma 97.2 0.055 1.2E-06 41.2 15.6 168 20-190 91-270 (282)
359 PF08596 Lgl_C: Lethal giant l 97.2 0.089 1.9E-06 43.0 18.6 192 17-211 83-326 (395)
360 PF12894 Apc4_WD40: Anaphase-p 97.1 0.0019 4.1E-08 35.3 4.9 31 20-50 11-41 (47)
361 cd00216 PQQ_DH Dehydrogenases 97.1 0.13 2.9E-06 43.4 19.5 195 32-230 61-328 (488)
362 PF00780 CNH: CNH domain; Int 97.0 0.1 2.2E-06 40.3 23.6 199 20-231 35-265 (275)
363 KOG2079 Vacuolar assembly/sort 97.0 0.0049 1.1E-07 54.7 8.4 100 119-220 98-202 (1206)
364 PF14783 BBS2_Mid: Ciliary BBS 96.9 0.056 1.2E-06 35.3 13.0 91 121-217 16-110 (111)
365 PF06977 SdiA-regulated: SdiA- 96.9 0.13 2.8E-06 39.1 22.6 198 13-217 14-246 (248)
366 COG3386 Gluconolactonase [Carb 96.9 0.1 2.3E-06 41.0 14.3 144 73-221 31-193 (307)
367 PF04841 Vps16_N: Vps16, N-ter 96.9 0.2 4.4E-06 41.2 20.7 68 116-186 186-253 (410)
368 KOG2395 Protein involved in va 96.8 0.019 4.2E-07 47.3 10.1 119 14-137 370-499 (644)
369 PF08553 VID27: VID27 cytoplas 96.7 0.12 2.6E-06 45.7 14.9 93 82-177 545-645 (794)
370 PF02897 Peptidase_S9_N: Proly 96.7 0.28 6.1E-06 40.4 23.6 198 22-225 125-361 (414)
371 PF00780 CNH: CNH domain; Int 96.5 0.26 5.7E-06 38.0 19.4 143 30-183 5-169 (275)
372 PF00930 DPPIV_N: Dipeptidyl p 96.4 0.036 7.9E-07 44.6 9.5 90 130-220 23-130 (353)
373 KOG2079 Vacuolar assembly/sort 96.4 0.035 7.6E-07 49.6 9.7 93 80-172 100-198 (1206)
374 PF02897 Peptidase_S9_N: Proly 96.4 0.44 9.5E-06 39.3 17.7 112 69-180 126-261 (414)
375 PHA02790 Kelch-like protein; P 96.3 0.37 8.1E-06 40.6 14.9 140 79-223 319-472 (480)
376 PF12234 Rav1p_C: RAVE protein 96.2 0.47 1E-05 41.0 15.0 97 80-178 42-155 (631)
377 PHA03098 kelch-like protein; P 96.1 0.34 7.4E-06 41.4 14.2 142 79-223 343-513 (534)
378 PF10313 DUF2415: Uncharacteri 96.1 0.047 1E-06 29.0 5.6 33 67-99 1-35 (43)
379 KOG2444 WD40 repeat protein [G 96.1 0.031 6.6E-07 41.3 6.5 104 32-138 70-177 (238)
380 KOG4441 Proteins containing BT 96.1 0.34 7.3E-06 41.8 13.8 186 30-223 283-501 (571)
381 cd00216 PQQ_DH Dehydrogenases 96.1 0.76 1.7E-05 38.9 18.2 105 81-189 303-434 (488)
382 COG3386 Gluconolactonase [Carb 96.1 0.54 1.2E-05 37.1 20.6 194 27-230 31-251 (307)
383 PF05096 Glu_cyclase_2: Glutam 96.0 0.48 1E-05 36.3 21.4 157 68-229 46-211 (264)
384 PF12234 Rav1p_C: RAVE protein 96.0 0.74 1.6E-05 39.8 15.5 101 118-220 39-155 (631)
385 PF10647 Gmad1: Lipoprotein Lp 95.9 0.57 1.2E-05 35.9 15.8 146 68-213 25-187 (253)
386 PF14655 RAB3GAP2_N: Rab3 GTPa 95.9 0.83 1.8E-05 37.6 19.0 41 192-232 308-348 (415)
387 PF05096 Glu_cyclase_2: Glutam 95.8 0.63 1.4E-05 35.6 22.9 180 22-209 46-249 (264)
388 KOG4441 Proteins containing BT 95.8 0.64 1.4E-05 40.1 14.3 142 79-223 381-548 (571)
389 PF15390 DUF4613: Domain of un 95.8 0.91 2E-05 38.6 14.4 149 68-223 21-188 (671)
390 TIGR03075 PQQ_enz_alc_DH PQQ-d 95.5 1.3 2.9E-05 37.8 20.3 190 32-227 69-339 (527)
391 COG3204 Uncharacterized protei 95.5 0.86 1.9E-05 35.3 17.6 159 62-221 81-263 (316)
392 PF15390 DUF4613: Domain of un 95.3 1.6 3.5E-05 37.1 15.4 146 20-178 19-185 (671)
393 PF11715 Nup160: Nucleoporin N 95.2 0.16 3.5E-06 43.5 9.0 73 159-231 156-258 (547)
394 PF10168 Nup88: Nuclear pore c 95.2 1.2 2.6E-05 39.5 14.3 82 148-229 83-188 (717)
395 PF10313 DUF2415: Uncharacteri 95.1 0.14 2.9E-06 27.2 5.1 32 193-224 2-36 (43)
396 PF06433 Me-amine-dh_H: Methyl 95.0 1.4 3.1E-05 35.0 19.1 156 33-189 148-330 (342)
397 KOG4499 Ca2+-binding protein R 94.8 1.3 2.7E-05 33.3 13.3 77 132-212 198-276 (310)
398 COG5167 VID27 Protein involved 94.7 1.5 3.3E-05 36.7 12.5 142 77-220 477-631 (776)
399 KOG2247 WD40 repeat-containing 94.6 0.0036 7.9E-08 51.0 -2.2 142 71-216 39-183 (615)
400 PF14727 PHTB1_N: PTHB1 N-term 94.5 2.4 5.1E-05 35.1 18.2 146 32-178 37-203 (418)
401 PF10647 Gmad1: Lipoprotein Lp 94.5 1.7 3.7E-05 33.3 12.4 108 111-220 26-143 (253)
402 PF14727 PHTB1_N: PTHB1 N-term 94.3 2.6 5.6E-05 34.9 17.1 146 75-221 33-204 (418)
403 PHA02713 hypothetical protein; 94.3 2.5 5.4E-05 36.5 13.8 91 79-170 304-408 (557)
404 TIGR03075 PQQ_enz_alc_DH PQQ-d 94.2 3.3 7.1E-05 35.5 14.6 59 131-189 442-500 (527)
405 TIGR02276 beta_rpt_yvtn 40-res 94.1 0.37 8E-06 25.1 5.7 41 76-116 1-41 (42)
406 PF00930 DPPIV_N: Dipeptidyl p 94.1 2.6 5.6E-05 34.0 19.8 142 68-209 185-345 (353)
407 KOG3630 Nuclear pore complex, 93.7 0.55 1.2E-05 42.8 8.8 144 23-166 103-260 (1405)
408 COG3490 Uncharacterized protei 93.7 2.6 5.6E-05 32.7 14.4 100 70-169 71-181 (366)
409 KOG4460 Nuclear pore complex, 93.4 1.8 3.9E-05 36.4 10.7 77 149-225 103-202 (741)
410 PF14655 RAB3GAP2_N: Rab3 GTPa 93.4 2.8 6E-05 34.6 11.8 90 14-107 301-408 (415)
411 KOG3630 Nuclear pore complex, 93.1 2 4.4E-05 39.5 11.2 126 84-210 119-262 (1405)
412 TIGR02604 Piru_Ver_Nterm putat 93.1 4 8.7E-05 33.2 17.7 145 21-170 14-204 (367)
413 TIGR03074 PQQ_membr_DH membran 93.0 6.6 0.00014 35.3 22.8 152 80-231 261-487 (764)
414 PF07569 Hira: TUP1-like enhan 92.5 1.4 3E-05 33.0 8.4 66 157-223 18-97 (219)
415 PF11715 Nup160: Nucleoporin N 92.4 1.8 3.9E-05 37.2 10.2 76 30-105 156-256 (547)
416 PF14870 PSII_BNR: Photosynthe 92.1 5 0.00011 31.7 21.4 102 109-212 145-253 (302)
417 PF07569 Hira: TUP1-like enhan 92.0 1.7 3.8E-05 32.5 8.4 63 116-179 18-95 (219)
418 KOG1916 Nuclear protein, conta 92.0 0.12 2.7E-06 45.6 2.6 130 88-220 110-264 (1283)
419 TIGR02604 Piru_Ver_Nterm putat 91.9 5.9 0.00013 32.2 15.4 61 151-212 125-204 (367)
420 PF08728 CRT10: CRT10; InterP 91.9 3 6.6E-05 36.7 10.6 103 118-220 112-245 (717)
421 PHA03098 kelch-like protein; P 91.9 4 8.6E-05 35.0 11.6 143 79-224 295-467 (534)
422 KOG4460 Nuclear pore complex, 91.6 2 4.3E-05 36.2 8.8 81 20-100 103-201 (741)
423 PF12657 TFIIIC_delta: Transcr 91.5 2.3 5E-05 30.4 8.4 31 192-222 86-122 (173)
424 PF14761 HPS3_N: Hermansky-Pud 91.5 4.5 9.8E-05 30.0 12.5 103 121-224 29-166 (215)
425 KOG2280 Vacuolar assembly/sort 91.1 10 0.00022 33.6 12.7 39 192-230 217-255 (829)
426 PF14781 BBS2_N: Ciliary BBSom 91.0 3.6 7.8E-05 28.0 12.6 110 73-184 5-130 (136)
427 PF07676 PD40: WD40-like Beta 91.0 1.2 2.7E-05 22.7 5.3 29 190-218 7-38 (39)
428 PHA02790 Kelch-like protein; P 91.0 7.6 0.00017 32.9 12.1 62 79-143 363-428 (480)
429 TIGR02276 beta_rpt_yvtn 40-res 90.5 1.5 3.2E-05 22.7 5.7 39 118-156 1-40 (42)
430 KOG2247 WD40 repeat-containing 90.5 0.033 7.2E-07 45.7 -2.1 134 24-164 38-174 (615)
431 COG5167 VID27 Protein involved 90.2 7 0.00015 33.0 10.7 118 14-137 504-631 (776)
432 PF14583 Pectate_lyase22: Olig 90.0 9.3 0.0002 31.2 13.7 147 73-221 42-222 (386)
433 PF10168 Nup88: Nuclear pore c 89.9 14 0.0003 33.1 19.7 80 21-100 85-182 (717)
434 KOG1897 Damage-specific DNA bi 89.9 15 0.00033 33.6 16.5 149 69-221 777-942 (1096)
435 PF14781 BBS2_N: Ciliary BBSom 89.8 4.8 0.0001 27.5 13.0 114 24-138 2-125 (136)
436 KOG2377 Uncharacterized conser 89.5 4.8 0.0001 33.5 9.1 85 9-96 55-139 (657)
437 PF12341 DUF3639: Protein of u 89.1 1.4 3.1E-05 20.8 3.7 26 192-219 2-27 (27)
438 TIGR03074 PQQ_membr_DH membran 89.0 17 0.00036 32.9 12.9 110 120-230 194-353 (764)
439 PF14761 HPS3_N: Hermansky-Pud 88.9 3.8 8.2E-05 30.4 7.6 49 162-211 29-79 (215)
440 COG3490 Uncharacterized protei 88.4 10 0.00022 29.6 12.9 97 114-210 73-180 (366)
441 COG3823 Glutamine cyclotransfe 87.7 9.6 0.00021 28.3 12.1 106 79-186 56-165 (262)
442 PF05694 SBP56: 56kDa selenium 86.6 17 0.00038 30.2 14.8 121 88-208 221-390 (461)
443 PF07995 GSDH: Glucose / Sorbo 86.4 15 0.00033 29.4 12.5 103 110-213 3-135 (331)
444 PF08801 Nucleoporin_N: Nup133 86.4 18 0.00038 30.1 14.4 31 192-222 190-220 (422)
445 COG4590 ABC-type uncharacteriz 86.0 4.4 9.5E-05 33.7 7.0 154 68-225 222-390 (733)
446 COG3204 Uncharacterized protei 85.8 15 0.00033 28.8 18.9 188 16-208 81-300 (316)
447 KOG2377 Uncharacterized conser 85.5 20 0.00044 30.0 13.3 113 108-222 66-186 (657)
448 PF08728 CRT10: CRT10; InterP 85.4 19 0.0004 32.1 10.9 155 20-178 40-245 (717)
449 PF05694 SBP56: 56kDa selenium 84.7 22 0.00048 29.6 24.7 190 31-222 86-343 (461)
450 KOG1897 Damage-specific DNA bi 84.6 33 0.00072 31.6 20.2 155 21-178 488-658 (1096)
451 KOG3616 Selective LIM binding 84.5 3.1 6.7E-05 36.8 5.8 69 19-95 13-81 (1636)
452 PF12657 TFIIIC_delta: Transcr 84.3 13 0.00028 26.6 8.8 31 68-98 87-122 (173)
453 PF14870 PSII_BNR: Photosynthe 83.7 20 0.00043 28.4 20.8 152 62-218 140-301 (302)
454 PF07250 Glyoxal_oxid_N: Glyox 83.2 18 0.0004 27.6 12.0 139 91-232 48-208 (243)
455 smart00564 PQQ beta-propeller 83.1 3.6 7.7E-05 19.9 3.7 25 205-229 8-32 (33)
456 KOG1983 Tomosyn and related SN 83.0 41 0.0009 31.5 14.8 30 20-49 35-64 (993)
457 PRK14131 N-acetylneuraminic ac 82.9 24 0.00052 28.8 14.7 51 79-129 85-149 (376)
458 COG3823 Glutamine cyclotransfe 82.7 18 0.00038 27.0 12.7 102 31-141 55-161 (262)
459 TIGR03547 muta_rot_YjhT mutatr 82.5 23 0.00051 28.3 15.1 51 79-129 64-128 (346)
460 PF07676 PD40: WD40-like Beta 82.3 4.9 0.00011 20.4 5.0 29 66-94 8-38 (39)
461 KOG1916 Nuclear protein, conta 81.5 1.4 3E-05 39.5 2.8 41 31-76 194-234 (1283)
462 KOG1900 Nuclear pore complex, 81.0 52 0.0011 31.4 12.9 155 65-222 77-273 (1311)
463 KOG3616 Selective LIM binding 80.9 24 0.00051 31.7 9.7 68 66-136 14-81 (1636)
464 KOG4499 Ca2+-binding protein R 80.9 22 0.00048 27.0 15.9 79 152-230 160-250 (310)
465 TIGR03548 mutarot_permut cycli 80.5 27 0.00058 27.7 17.3 101 79-180 73-195 (323)
466 PF01731 Arylesterase: Arylest 80.2 12 0.00026 23.4 6.6 31 192-222 54-85 (86)
467 PF01436 NHL: NHL repeat; Int 79.8 5 0.00011 18.9 3.8 25 194-218 4-28 (28)
468 COG5276 Uncharacterized conser 79.4 29 0.00062 27.4 18.0 147 68-221 88-241 (370)
469 PRK10115 protease 2; Provision 77.2 54 0.0012 29.4 24.1 191 21-220 127-343 (686)
470 PLN02193 nitrile-specifier pro 76.0 48 0.001 28.1 14.6 145 79-224 229-413 (470)
471 TIGR03032 conserved hypothetic 74.5 42 0.00091 26.8 9.6 47 80-128 214-260 (335)
472 PF14779 BBS1: Ciliary BBSome 73.4 20 0.00044 27.5 6.7 56 121-176 196-255 (257)
473 PLN00033 photosystem II stabil 73.0 53 0.0011 27.2 15.7 150 66-216 238-395 (398)
474 COG5290 IkappaB kinase complex 72.9 75 0.0016 28.9 13.3 29 20-48 112-140 (1243)
475 PF10395 Utp8: Utp8 family; I 71.9 72 0.0016 28.3 15.8 154 20-179 129-305 (670)
476 PLN02153 epithiospecifier prot 71.7 50 0.0011 26.4 12.5 24 79-102 138-172 (341)
477 PF11635 Med16: Mediator compl 71.2 82 0.0018 28.6 15.5 67 150-216 260-345 (753)
478 PF14779 BBS1: Ciliary BBSome 71.0 34 0.00073 26.4 7.4 57 162-218 196-255 (257)
479 PF14269 Arylsulfotran_2: Aryl 70.8 32 0.0007 27.1 7.6 71 150-220 144-219 (299)
480 COG4590 ABC-type uncharacteriz 70.0 67 0.0014 27.1 10.3 108 32-141 280-389 (733)
481 TIGR03547 muta_rot_YjhT mutatr 68.5 60 0.0013 26.0 14.8 40 89-129 168-210 (346)
482 KOG1898 Splicing factor 3b, su 68.1 47 0.001 31.0 8.5 71 160-230 548-627 (1205)
483 PLN02153 epithiospecifier prot 68.0 61 0.0013 25.9 14.1 24 79-102 86-114 (341)
484 PF10214 Rrn6: RNA polymerase 67.2 1E+02 0.0022 28.1 16.4 169 6-178 133-328 (765)
485 PF07250 Glyoxal_oxid_N: Glyox 66.9 55 0.0012 25.0 9.9 114 28-143 74-202 (243)
486 TIGR03606 non_repeat_PQQ dehyd 66.8 79 0.0017 26.8 14.0 52 110-161 31-90 (454)
487 PF03088 Str_synth: Strictosid 66.3 30 0.00065 21.8 7.6 40 128-167 35-74 (89)
488 PF03088 Str_synth: Strictosid 65.5 31 0.00068 21.7 8.5 44 83-126 31-74 (89)
489 PF07995 GSDH: Glucose / Sorbo 65.3 42 0.00091 26.9 7.4 57 160-216 270-330 (331)
490 PLN02193 nitrile-specifier pro 63.5 92 0.002 26.4 13.2 64 79-143 279-356 (470)
491 TIGR03548 mutarot_permut cycli 62.6 76 0.0017 25.1 15.3 64 79-142 124-198 (323)
492 PRK13684 Ycf48-like protein; P 62.1 82 0.0018 25.3 15.7 147 67-219 173-329 (334)
493 TIGR02608 delta_60_rpt delta-6 61.8 27 0.00059 19.7 4.9 19 22-40 2-20 (55)
494 KOG3611 Semaphorins [Signal tr 61.4 1.3E+02 0.0028 27.3 11.4 73 20-93 407-489 (737)
495 PF13570 PQQ_3: PQQ-like domai 61.3 18 0.00039 18.4 3.2 21 202-222 20-40 (40)
496 PF01011 PQQ: PQQ enzyme repea 59.9 22 0.00047 18.0 3.9 25 206-230 3-27 (38)
497 KOG1900 Nuclear pore complex, 59.4 49 0.0011 31.6 7.3 75 20-98 178-273 (1311)
498 TIGR03118 PEPCTERM_chp_1 conse 57.4 97 0.0021 24.7 22.8 206 23-230 25-288 (336)
499 COG1520 FOG: WD40-like repeat 57.2 1E+02 0.0023 25.0 11.7 109 120-230 68-180 (370)
500 KOG1520 Predicted alkaloid syn 57.1 1.1E+02 0.0023 25.1 10.7 49 169-218 197-247 (376)
No 1
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=100.00 E-value=6.5e-42 Score=245.97 Aligned_cols=230 Identities=58% Similarity=1.081 Sum_probs=215.4
Q ss_pred CCCCCCCCCccceeeeCccccEEEEEECcCCCEEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCE
Q 026765 2 GESSIPFKNLHSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADL 81 (233)
Q Consensus 2 ~~~~~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~ 81 (233)
-++..+|+.++.+++.+|.+.|.+|+|+.+|..|++|+.|++++||+++... .......++|.+.|-.++|+|..+.+
T Consensus 2 ~~t~~~~~~l~~r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r--~~~~~~~~gh~~svdql~w~~~~~d~ 79 (313)
T KOG1407|consen 2 EETLPKFKSLKRRELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDR--FRKELVYRGHTDSVDQLCWDPKHPDL 79 (313)
T ss_pred CccccchhhhhhHHhhhhhhcceEEEEcccCceeeecccCCceEEEEecchh--hhhhhcccCCCcchhhheeCCCCCcc
Confidence 3566679999999999999999999999999999999999999999998642 23445678999999999999999999
Q ss_pred EEEEeCCCeEEEEECCCCeeeeeeeecCCeeEEEECCCCCeEEEEcCCCcEEEEEcCCCeeeeeeecCceeeEEEECCCC
Q 026765 82 IATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTG 161 (233)
Q Consensus 82 l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (233)
+++++.|+.|++||++.+++.......++.+.+.|+|+|.+++++..|..|.+.|.++.+.....++..+++.+.|+.++
T Consensus 80 ~atas~dk~ir~wd~r~~k~~~~i~~~~eni~i~wsp~g~~~~~~~kdD~it~id~r~~~~~~~~~~~~e~ne~~w~~~n 159 (313)
T KOG1407|consen 80 FATASGDKTIRIWDIRSGKCTARIETKGENINITWSPDGEYIAVGNKDDRITFIDARTYKIVNEEQFKFEVNEISWNNSN 159 (313)
T ss_pred eEEecCCceEEEEEeccCcEEEEeeccCcceEEEEcCCCCEEEEecCcccEEEEEecccceeehhcccceeeeeeecCCC
Confidence 99999999999999999999999988899999999999999999999999999999999999999999999999999999
Q ss_pred CEEEEEeCCCeEEEEecCCceeeeEEeeecCceeEEEECCCCCEEEEeeCCCcEEEEecCCcEEEEeeecCC
Q 026765 162 EMFFLTTGNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLE 233 (233)
Q Consensus 162 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~las~s~dg~v~iwd~~~~~~i~~~~~~~ 233 (233)
+++++..+.|.+.|..++..+++.++.+|.....||.|+|+|+|||+|+.|..+-+||+++.-|++.|..|+
T Consensus 160 d~Fflt~GlG~v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isRld 231 (313)
T KOG1407|consen 160 DLFFLTNGLGCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDELICERCISRLD 231 (313)
T ss_pred CEEEEecCCceEEEEeccccccccccccCCcceEEEEECCCCceEeeccccceeeccChhHhhhheeecccc
Confidence 999999999999999999999999999999999999999999999999999999999999999999998774
No 2
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=4.5e-40 Score=250.06 Aligned_cols=217 Identities=24% Similarity=0.342 Sum_probs=192.9
Q ss_pred cceeeeCccccEEEEEECcC--CCEEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCC
Q 026765 12 HSREYTGHKKKVHSVAWNCT--GTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDK 89 (233)
Q Consensus 12 ~~~~~~~H~~~V~~~~~~~~--~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~ 89 (233)
...+|.||++.|.++.|+|. +..||||+.||+|++|+++... ....+.+|...|..++|+|+| ++|+|++.|.
T Consensus 209 ~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e~----~l~~l~gH~~RVs~VafHPsG-~~L~TasfD~ 283 (459)
T KOG0272|consen 209 LLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQET----PLQDLEGHLARVSRVAFHPSG-KFLGTASFDS 283 (459)
T ss_pred eeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCCc----chhhhhcchhhheeeeecCCC-ceeeeccccc
Confidence 34689999999999999997 5689999999999999987532 233678999999999999985 6889999999
Q ss_pred eEEEEECCCCeeeeeee-ecCCeeEEEECCCCCeEEEEcCCCcEEEEEcCCCeeeeeee-cCceeeEEEECCCCCEEEEE
Q 026765 90 TVRLWDARSGKCSQQAE-LSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRK-FGYEVNEIAWNMTGEMFFLT 167 (233)
Q Consensus 90 ~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 167 (233)
+-++||++++......+ ++..+.+++|.|||..+++|+.|..-+|||+|+++.+.... +..+|..+.|+|+|-.++++
T Consensus 284 tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATg 363 (459)
T KOG0272|consen 284 TWRLWDLETKSELLLQEGHSKGVFSIAFQPDGSLAATGGLDSLGRVWDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATG 363 (459)
T ss_pred chhhcccccchhhHhhcccccccceeEecCCCceeeccCccchhheeecccCcEEEEecccccceeeEeECCCceEEeec
Confidence 99999999886544333 34567889999999999999999999999999998886654 55689999999999999999
Q ss_pred eCCCeEEEEecCCceeeeEEeeecCceeEEEECC-CCCEEEEeeCCCcEEEEecCCcEEEEeeecCC
Q 026765 168 TGNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDP-MGRYFAVGSADSLVSLWDISEMLCVRTFTKLE 233 (233)
Q Consensus 168 ~~~~~v~~~~~~~~~~~~~~~~~~~~v~~i~~~p-~~~~las~s~dg~v~iwd~~~~~~i~~~~~~~ 233 (233)
++|++++|||++..+.+..+.+|..-|..|.|+| .|.+|+|+|.|++++||.-.+..+++++++|+
T Consensus 364 s~Dnt~kVWDLR~r~~ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~ksLaGHe 430 (459)
T KOG0272|consen 364 SSDNTCKVWDLRMRSELYTIPAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPLKSLAGHE 430 (459)
T ss_pred CCCCcEEEeeecccccceecccccchhhheEecccCCeEEEEcccCcceeeecCCCcccchhhcCCc
Confidence 9999999999998888999999999999999999 77899999999999999999999999999875
No 3
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=1.4e-39 Score=247.49 Aligned_cols=211 Identities=21% Similarity=0.308 Sum_probs=188.7
Q ss_pred CccccEEEEEECcCCCEEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCC-CCCEEEEEeCCCeEEEEEC
Q 026765 18 GHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPK-HADLIATASGDKTVRLWDA 96 (233)
Q Consensus 18 ~H~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-~~~~l~sg~~d~~i~iwd~ 96 (233)
|-+.+|..+.|+.+++.|||||++|.++||+...- .....+.||+..|.++.|+|. +...++||+.||++++|++
T Consensus 173 gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~----~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~ 248 (459)
T KOG0272|consen 173 GDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQC----NLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKL 248 (459)
T ss_pred cCCCcceeeEeecCCCeEEEeecCCceeEeecCCc----ceeEEEeccccceeeEEEccCCCccceeeeccCCceeeecc
Confidence 66899999999999999999999999999997532 234578999999999999998 4668899999999999999
Q ss_pred CCCeeeeeeeec-CCeeEEEECCCCCeEEEEcCCCcEEEEEcCCCeeee-eeecCceeeEEEECCCCCEEEEEeCCCeEE
Q 026765 97 RSGKCSQQAELS-GENINITYKPDGTHIAVGNRDDELTILDVRKFKPIH-RRKFGYEVNEIAWNMTGEMFFLTTGNGTVE 174 (233)
Q Consensus 97 ~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 174 (233)
.+....+.+..+ ..+..++|+|+|++|++++.|.+-++||+++...+. +.-+..++.+++|+++|..+++|+-|..-+
T Consensus 249 ~~e~~l~~l~gH~~RVs~VafHPsG~~L~TasfD~tWRlWD~~tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~R 328 (459)
T KOG0272|consen 249 SQETPLQDLEGHLARVSRVAFHPSGKFLGTASFDSTWRLWDLETKSELLLQEGHSKGVFSIAFQPDGSLAATGGLDSLGR 328 (459)
T ss_pred CCCcchhhhhcchhhheeeeecCCCceeeecccccchhhcccccchhhHhhcccccccceeEecCCCceeeccCccchhh
Confidence 887777766655 345679999999999999999999999998865543 344667899999999999999999999999
Q ss_pred EEecCCceeeeEEeeecCceeEEEECCCCCEEEEeeCCCcEEEEecCCcEEEEeeecC
Q 026765 175 VLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKL 232 (233)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~las~s~dg~v~iwd~~~~~~i~~~~~~ 232 (233)
+||+++++++..+.+|..+|.+|+|+|+|..|||||.|++++|||++...++++++.|
T Consensus 329 vWDlRtgr~im~L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH 386 (459)
T KOG0272|consen 329 VWDLRTGRCIMFLAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIPAH 386 (459)
T ss_pred eeecccCcEEEEecccccceeeEeECCCceEEeecCCCCcEEEeeecccccceecccc
Confidence 9999999999999999999999999999999999999999999999999889988765
No 4
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=5.2e-37 Score=219.49 Aligned_cols=215 Identities=19% Similarity=0.377 Sum_probs=183.7
Q ss_pred cceeeeCccccEEEEEECcCCCEEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCCeE
Q 026765 12 HSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTV 91 (233)
Q Consensus 12 ~~~~~~~H~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i 91 (233)
+..+|.+|++.|+++.|..+|++++|||.||++||||+.... .. +.-.|..+|+++..+|+..+ |++|.++|.|
T Consensus 75 Pv~t~e~h~kNVtaVgF~~dgrWMyTgseDgt~kIWdlR~~~----~q-R~~~~~spVn~vvlhpnQte-Lis~dqsg~i 148 (311)
T KOG0315|consen 75 PVATFEGHTKNVTAVGFQCDGRWMYTGSEDGTVKIWDLRSLS----CQ-RNYQHNSPVNTVVLHPNQTE-LISGDQSGNI 148 (311)
T ss_pred ceeEEeccCCceEEEEEeecCeEEEecCCCceEEEEeccCcc----cc-hhccCCCCcceEEecCCcce-EEeecCCCcE
Confidence 667899999999999999999999999999999999996421 12 23357899999999998665 5699999999
Q ss_pred EEEECCCCeeeeeeeec--CCeeEEEECCCCCeEEEEcCCCcEEEEEcCCC------eeeeeee-cCceeeEEEECCCCC
Q 026765 92 RLWDARSGKCSQQAELS--GENINITYKPDGTHIAVGNRDDELTILDVRKF------KPIHRRK-FGYEVNEIAWNMTGE 162 (233)
Q Consensus 92 ~iwd~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~------~~~~~~~-~~~~~~~~~~~~~~~ 162 (233)
++||+.+..+....... ..+.++...|||.+++.+...|.+.+|++-.. ++++.++ +...+..+.++|+++
T Consensus 149 rvWDl~~~~c~~~liPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k 228 (311)
T KOG0315|consen 149 RVWDLGENSCTHELIPEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVK 228 (311)
T ss_pred EEEEccCCccccccCCCCCcceeeEEEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCc
Confidence 99999998777665543 34567899999999999999999999998542 3344333 345688899999999
Q ss_pred EEEEEeCCCeEEEEecCCc-eeeeEEeeecCceeEEEECCCCCEEEEeeCCCcEEEEecCCcEEEEeeecC
Q 026765 163 MFFLTTGNGTVEVLTYPSL-RPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKL 232 (233)
Q Consensus 163 ~~~~~~~~~~v~~~~~~~~-~~~~~~~~~~~~v~~i~~~p~~~~las~s~dg~v~iwd~~~~~~i~~~~~~ 232 (233)
++++.+.|.+++||+.++. +.-..+.+|...++.++||.+|+||++|+.|+.+++|++..++.++.|+++
T Consensus 229 ~lat~ssdktv~iwn~~~~~kle~~l~gh~rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~k~v~qy~gh 299 (311)
T KOG0315|consen 229 YLATCSSDKTVKIWNTDDFFKLELVLTGHQRWVWDCAFSADGEYLVTASSDHTARLWDLSAGKEVRQYQGH 299 (311)
T ss_pred EEEeecCCceEEEEecCCceeeEEEeecCCceEEeeeeccCccEEEecCCCCceeecccccCceeeecCCc
Confidence 9999999999999999887 555667899999999999999999999999999999999999999999875
No 5
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=5.6e-38 Score=254.46 Aligned_cols=206 Identities=23% Similarity=0.371 Sum_probs=185.7
Q ss_pred ceeeeCccccEEEEEECcCCCEEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCCeEE
Q 026765 13 SREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVR 92 (233)
Q Consensus 13 ~~~~~~H~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~ 92 (233)
.+++.||.++|+.+.|+|+.++|+|+|.|++||+|.+.+.. ..+.++||..+|-++.|+|. +.++|||+.|++.+
T Consensus 444 ~~~L~GH~GPVyg~sFsPd~rfLlScSED~svRLWsl~t~s----~~V~y~GH~~PVwdV~F~P~-GyYFatas~D~tAr 518 (707)
T KOG0263|consen 444 SRTLYGHSGPVYGCSFSPDRRFLLSCSEDSSVRLWSLDTWS----CLVIYKGHLAPVWDVQFAPR-GYYFATASHDQTAR 518 (707)
T ss_pred eEEeecCCCceeeeeecccccceeeccCCcceeeeecccce----eEEEecCCCcceeeEEecCC-ceEEEecCCCceee
Confidence 35689999999999999999999999999999999997633 55678899999999999998 48899999999999
Q ss_pred EEECCCCeeeeeeeec-CCeeEEEECCCCCeEEEEcCCCcEEEEEcCCCeeeeeee-cCceeeEEEECCCCCEEEEEeCC
Q 026765 93 LWDARSGKCSQQAELS-GENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRK-FGYEVNEIAWNMTGEMFFLTTGN 170 (233)
Q Consensus 93 iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 170 (233)
+|........+.+..+ ..+-|+.|+|+.+|+++|+.|.++++||..++..+.... +..++.+++++|+|+++++|+.+
T Consensus 519 LWs~d~~~PlRifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed 598 (707)
T KOG0263|consen 519 LWSTDHNKPLRIFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLASGDED 598 (707)
T ss_pred eeecccCCchhhhcccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEeecccC
Confidence 9999887766666554 456679999999999999999999999998887765433 56689999999999999999999
Q ss_pred CeEEEEecCCceeeeEEeeecCceeEEEECCCCCEEEEeeCCCcEEEEecCCc
Q 026765 171 GTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEM 223 (233)
Q Consensus 171 ~~v~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~las~s~dg~v~iwd~~~~ 223 (233)
|.|.+||+..++.+..+.+|.+.|+++.|+.+|..||+|+.|..|++||+...
T Consensus 599 ~~I~iWDl~~~~~v~~l~~Ht~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~ 651 (707)
T KOG0263|consen 599 GLIKIWDLANGSLVKQLKGHTGTIYSLSFSRDGNVLASGGADNSVRLWDLTKV 651 (707)
T ss_pred CcEEEEEcCCCcchhhhhcccCceeEEEEecCCCEEEecCCCCeEEEEEchhh
Confidence 99999999999999999999999999999999999999999999999998754
No 6
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=4.6e-37 Score=231.54 Aligned_cols=214 Identities=25% Similarity=0.401 Sum_probs=166.7
Q ss_pred eeeeCccccEEEEEECcCCCEEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCCeEEE
Q 026765 14 REYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRL 93 (233)
Q Consensus 14 ~~~~~H~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~i 93 (233)
..+.||.++|.|++|+|+|++||||+.|.+||+||+.++.. ....++|...|.+++|+|++ +.|+||+.||+|++
T Consensus 109 sS~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp----~~t~KgH~~WVlcvawsPDg-k~iASG~~dg~I~l 183 (480)
T KOG0271|consen 109 SSIAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETP----LFTCKGHKNWVLCVAWSPDG-KKIASGSKDGSIRL 183 (480)
T ss_pred cccCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCc----ceeecCCccEEEEEEECCCc-chhhccccCCeEEE
Confidence 46789999999999999999999999999999999986442 33578999999999999986 57899999999999
Q ss_pred EECCCCeeeee-eee-cCCeeEEEEC-----CCCCeEEEEcCCCcEEEEEcCCCeeeeee-ecCceeeEEEECCC-----
Q 026765 94 WDARSGKCSQQ-AEL-SGENINITYK-----PDGTHIAVGNRDDELTILDVRKFKPIHRR-KFGYEVNEIAWNMT----- 160 (233)
Q Consensus 94 wd~~~~~~~~~-~~~-~~~~~~~~~~-----~~~~~l~~~~~d~~i~i~d~~~~~~~~~~-~~~~~~~~~~~~~~----- 160 (233)
||-.++++... +.. ...+.+++|. |..+++++++.||.++|||+.....+... -+..+++++.|.-+
T Consensus 184 wdpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG~gliyS 263 (480)
T KOG0271|consen 184 WDPKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCVRWGGEGLIYS 263 (480)
T ss_pred ecCCCCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCccceEEEEEcCCceEEe
Confidence 99988876442 332 3456678875 46789999999999999998765544332 23345555555322
Q ss_pred -----------------------------------------------CC-------------------------EEEEEe
Q 026765 161 -----------------------------------------------GE-------------------------MFFLTT 168 (233)
Q Consensus 161 -----------------------------------------------~~-------------------------~~~~~~ 168 (233)
++ .+++++
T Consensus 264 gS~DrtIkvw~a~dG~~~r~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgs 343 (480)
T KOG0271|consen 264 GSQDRTIKVWRALDGKLCRELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGS 343 (480)
T ss_pred cCCCceEEEEEccchhHHHhhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEec
Confidence 22 245555
Q ss_pred CCCeEEEEecC-CceeeeEEeeecCceeEEEECCCCCEEEEeeCCCcEEEEecCCcEEEEeeecC
Q 026765 169 GNGTVEVLTYP-SLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKL 232 (233)
Q Consensus 169 ~~~~v~~~~~~-~~~~~~~~~~~~~~v~~i~~~p~~~~las~s~dg~v~iwd~~~~~~i~~~~~~ 232 (233)
.|.++.+|+.. +-+++..+.+|..-|+.+.||||++++|+||-|..|++||..+|+.+.+|.+|
T Consensus 344 Dd~tlflW~p~~~kkpi~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfRGH 408 (480)
T KOG0271|consen 344 DDFTLFLWNPFKSKKPITRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASFRGH 408 (480)
T ss_pred CCceEEEecccccccchhhhhchhhheeeEEECCCccEEEEeecccceeeeeCCCcchhhhhhhc
Confidence 55555555542 22355566778888999999999999999999999999999999999888765
No 7
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1e-36 Score=229.66 Aligned_cols=229 Identities=25% Similarity=0.397 Sum_probs=183.4
Q ss_pred CCCCCCCCCcc----ceeeeCccccEEEEEECcCCCEEEEEeCCCCEEEEecccCCC-----------------------
Q 026765 2 GESSIPFKNLH----SREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGH----------------------- 54 (233)
Q Consensus 2 ~~~~~~~~~~~----~~~~~~H~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~----------------------- 54 (233)
++.+.+|+.+. .++..+|..-|.|++|+|||+.||||+.||+|++||.....+
T Consensus 135 GD~TvR~WD~~TeTp~~t~KgH~~WVlcvawsPDgk~iASG~~dg~I~lwdpktg~~~g~~l~gH~K~It~Lawep~hl~ 214 (480)
T KOG0271|consen 135 GDTTVRLWDLDTETPLFTCKGHKNWVLCVAWSPDGKKIASGSKDGSIRLWDPKTGQQIGRALRGHKKWITALAWEPLHLV 214 (480)
T ss_pred CCceEEeeccCCCCcceeecCCccEEEEEEECCCcchhhccccCCeEEEecCCCCCcccccccCcccceeEEeecccccC
Confidence 34555665554 356789999999999999999999999999999999643210
Q ss_pred ---------------------CceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeeeeecCCee-
Q 026765 55 ---------------------GKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENI- 112 (233)
Q Consensus 55 ---------------------~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~- 112 (233)
.......+.||+.+|+|+.|-. ..+|+||+.|++|++|+...|.+.+.+..+..-+
T Consensus 215 p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrwGG--~gliySgS~DrtIkvw~a~dG~~~r~lkGHahwvN 292 (480)
T KOG0271|consen 215 PPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCVRWGG--EGLIYSGSQDRTIKVWRALDGKLCRELKGHAHWVN 292 (480)
T ss_pred CCccceecccCCCCEEEEEccCceEEEEeccCccceEEEEEcC--CceEEecCCCceEEEEEccchhHHHhhcccchhee
Confidence 0112234678999999999954 4689999999999999999888776665544322
Q ss_pred EE-----------EECCCCC-------------------------eEEEEcCCCcEEEEEcCCCe-eeee-eecCceeeE
Q 026765 113 NI-----------TYKPDGT-------------------------HIAVGNRDDELTILDVRKFK-PIHR-RKFGYEVNE 154 (233)
Q Consensus 113 ~~-----------~~~~~~~-------------------------~l~~~~~d~~i~i~d~~~~~-~~~~-~~~~~~~~~ 154 (233)
.+ +|.|.++ .+++|+.|.++.+|+....+ ++.. ..+...++.
T Consensus 293 ~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~rmtgHq~lVn~ 372 (480)
T KOG0271|consen 293 HLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPITRMTGHQALVNH 372 (480)
T ss_pred eeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccchhhhhchhhheee
Confidence 12 3445444 49999999999999975433 4433 224456999
Q ss_pred EEECCCCCEEEEEeCCCeEEEEecCCceeeeEEeeecCceeEEEECCCCCEEEEeeCCCcEEEEecCCcEEEEeeecC
Q 026765 155 IAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKL 232 (233)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~las~s~dg~v~iwd~~~~~~i~~~~~~ 232 (233)
+.|+||++++++++-|..|++|+.++++.+.+|.+|-..|+.++|+.|.++|++||.|.+++|||+++.+..+.++++
T Consensus 373 V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfRGHv~~VYqvawsaDsRLlVS~SkDsTLKvw~V~tkKl~~DLpGh 450 (480)
T KOG0271|consen 373 VSFSPDGRYIASASFDKSVKLWDGRTGKFLASFRGHVAAVYQVAWSADSRLLVSGSKDSTLKVWDVRTKKLKQDLPGH 450 (480)
T ss_pred EEECCCccEEEEeecccceeeeeCCCcchhhhhhhccceeEEEEeccCccEEEEcCCCceEEEEEeeeeeecccCCCC
Confidence 999999999999999999999999999999999999999999999999999999999999999999988877776654
No 8
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=4.5e-35 Score=212.49 Aligned_cols=218 Identities=21% Similarity=0.313 Sum_probs=187.9
Q ss_pred ceeeeCccccEEEEEECcCC-CEEEEEeCCCCEEEEecccCCCC-ceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCCe
Q 026765 13 SREYTGHKKKVHSVAWNCTG-TKLASGSVDQTARVWHIEPHGHG-KVKDIELRGHADSVDQLCWDPKHADLIATASGDKT 90 (233)
Q Consensus 13 ~~~~~~H~~~V~~~~~~~~~-~~l~s~~~D~~v~vW~~~~~~~~-~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~ 90 (233)
.-++.+|++.|+.++..+.+ +.+++++.|+++.+|++...... ......+.||...|..+..++++ ++.+|+++|++
T Consensus 8 ~~tl~gh~d~Vt~la~~~~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH~v~dv~~s~dg-~~alS~swD~~ 86 (315)
T KOG0279|consen 8 RGTLEGHTDWVTALAIKIKNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSHFVSDVVLSSDG-NFALSASWDGT 86 (315)
T ss_pred eeeecCCCceEEEEEeecCCCceEEEcccceEEEEEEeccCccccCceeeeeeccceEecceEEccCC-ceEEeccccce
Confidence 45789999999999998874 67899999999999999654321 12344688999999999999975 67889999999
Q ss_pred EEEEECCCCeeeeeeeec-CCeeEEEECCCCCeEEEEcCCCcEEEEEcCCCeeeeeeec--CceeeEEEECCC--CCEEE
Q 026765 91 VRLWDARSGKCSQQAELS-GENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKF--GYEVNEIAWNMT--GEMFF 165 (233)
Q Consensus 91 i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~--~~~~~~~~~~~~--~~~~~ 165 (233)
+++||+.+++..+.+..+ ..+.+++|+||.+.+++|+.|.+|++|+............ ..=+.++.|+|+ ..+|+
T Consensus 87 lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn~qivSGSrDkTiklwnt~g~ck~t~~~~~~~~WVscvrfsP~~~~p~Iv 166 (315)
T KOG0279|consen 87 LRLWDLATGESTRRFVGHTKDVLSVAFSTDNRQIVSGSRDKTIKLWNTLGVCKYTIHEDSHREWVSCVRFSPNESNPIIV 166 (315)
T ss_pred EEEEEecCCcEEEEEEecCCceEEEEecCCCceeecCCCcceeeeeeecccEEEEEecCCCcCcEEEEEEcCCCCCcEEE
Confidence 999999999888877765 4567899999999999999999999999876554433332 234899999999 67888
Q ss_pred EEeCCCeEEEEecCCceeeeEEeeecCceeEEEECCCCCEEEEeeCCCcEEEEecCCcEEEEeeec
Q 026765 166 LTTGNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTK 231 (233)
Q Consensus 166 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~las~s~dg~v~iwd~~~~~~i~~~~~ 231 (233)
.++.|+++++||+++.+....+.+|.+-++.+++||||...++|+.||.+.+||+++++++++++.
T Consensus 167 s~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~lysl~a 232 (315)
T KOG0279|consen 167 SASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYSLEA 232 (315)
T ss_pred EccCCceEEEEccCCcchhhccccccccEEEEEECCCCCEEecCCCCceEEEEEccCCceeEeccC
Confidence 999999999999999999999999999999999999999999999999999999999999998764
No 9
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=6.6e-35 Score=212.94 Aligned_cols=202 Identities=25% Similarity=0.440 Sum_probs=183.4
Q ss_pred ceeeeCccccEEEEEECcCCCEEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCCeEE
Q 026765 13 SREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVR 92 (233)
Q Consensus 13 ~~~~~~H~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~ 92 (233)
.+++.+|++-+.|+.|-+ ..+|+|+|.|.+..+||++... +...+.||..-|.++++.|.+++.++||+.|+..+
T Consensus 138 ~r~l~gHtgylScC~f~d-D~~ilT~SGD~TCalWDie~g~----~~~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~ak 212 (343)
T KOG0286|consen 138 SRELAGHTGYLSCCRFLD-DNHILTGSGDMTCALWDIETGQ----QTQVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAK 212 (343)
T ss_pred eeeecCccceeEEEEEcC-CCceEecCCCceEEEEEcccce----EEEEecCCcccEEEEecCCCCCCeEEeccccccee
Confidence 367899999999999976 7788899999999999998532 44578999999999999997788999999999999
Q ss_pred EEECCCCeeeeeeeec-CCeeEEEECCCCCeEEEEcCCCcEEEEEcCCCeeeeeeec---CceeeEEEECCCCCEEEEEe
Q 026765 93 LWDARSGKCSQQAELS-GENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKF---GYEVNEIAWNMTGEMFFLTT 168 (233)
Q Consensus 93 iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~ 168 (233)
+||++.+.+.+.+..+ ..+..+.|.|+|.-+++|+.|++.++||+|..+.+..+.. ..++++++|+..|+++++|.
T Consensus 213 lWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~~~~~~gitSv~FS~SGRlLfagy 292 (343)
T KOG0286|consen 213 LWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYSHDSIICGITSVAFSKSGRLLFAGY 292 (343)
T ss_pred eeeccCcceeEeecccccccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeeccCcccCCceeEEEcccccEEEeee
Confidence 9999999999998865 4556799999999999999999999999999887766654 35789999999999999999
Q ss_pred CCCeEEEEecCCceeeeEEeeecCceeEEEECCCCCEEEEeeCCCcEEEEe
Q 026765 169 GNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWD 219 (233)
Q Consensus 169 ~~~~v~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~las~s~dg~v~iwd 219 (233)
.|.++.+||.-.++....+.+|...|.|+..+|||.-+++||-|.++|||.
T Consensus 293 ~d~~c~vWDtlk~e~vg~L~GHeNRvScl~~s~DG~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 293 DDFTCNVWDTLKGERVGVLAGHENRVSCLGVSPDGMAVATGSWDSTLRIWA 343 (343)
T ss_pred cCCceeEeeccccceEEEeeccCCeeEEEEECCCCcEEEecchhHheeecC
Confidence 999999999988899999999999999999999999999999999999995
No 10
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=7.6e-35 Score=211.33 Aligned_cols=211 Identities=18% Similarity=0.261 Sum_probs=175.1
Q ss_pred ceeeeCccccEEEEEECcCCCEEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCCeEE
Q 026765 13 SREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVR 92 (233)
Q Consensus 13 ~~~~~~H~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~ 92 (233)
.+.|.||...|..++.+++|++++|+|+|+++|+||+... ....++.||...|.+++|+|++. .++||+.|++|+
T Consensus 56 ~r~~~GHsH~v~dv~~s~dg~~alS~swD~~lrlWDl~~g----~~t~~f~GH~~dVlsva~s~dn~-qivSGSrDkTik 130 (315)
T KOG0279|consen 56 VRRLTGHSHFVSDVVLSSDGNFALSASWDGTLRLWDLATG----ESTRRFVGHTKDVLSVAFSTDNR-QIVSGSRDKTIK 130 (315)
T ss_pred eeeeeccceEecceEEccCCceEEeccccceEEEEEecCC----cEEEEEEecCCceEEEEecCCCc-eeecCCCcceee
Confidence 5778999999999999999999999999999999999753 23457889999999999999865 578999999999
Q ss_pred EEECCCCeeeeeeee--cCCeeEEEECCC--CCeEEEEcCCCcEEEEEcCCCeeeeeee-cCceeeEEEECCCCCEEEEE
Q 026765 93 LWDARSGKCSQQAEL--SGENINITYKPD--GTHIAVGNRDDELTILDVRKFKPIHRRK-FGYEVNEIAWNMTGEMFFLT 167 (233)
Q Consensus 93 iwd~~~~~~~~~~~~--~~~~~~~~~~~~--~~~l~~~~~d~~i~i~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 167 (233)
+||............ ..-+.++.|+|+ ..+|++++.|+++++||+++.+..+... +...++.+.++|||...++|
T Consensus 131 lwnt~g~ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~~v~t~~vSpDGslcasG 210 (315)
T KOG0279|consen 131 LWNTLGVCKYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSGYVNTVTVSPDGSLCASG 210 (315)
T ss_pred eeeecccEEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhccccccccEEEEEECCCCCEEecC
Confidence 999876543222222 234568999998 6789999999999999999877665533 45678999999999999999
Q ss_pred eCCCeEEEEecCCceeeeEEeeecCceeEEEECCCCCEEEEeeCCCcEEEEecCCcEEEEeee
Q 026765 168 TGNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFT 230 (233)
Q Consensus 168 ~~~~~v~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~las~s~dg~v~iwd~~~~~~i~~~~ 230 (233)
+.||...+||++..+.+..+ .|...|++++|+|+..+|+.+ .+..|+|||+++..++-++.
T Consensus 211 gkdg~~~LwdL~~~k~lysl-~a~~~v~sl~fspnrywL~~a-t~~sIkIwdl~~~~~v~~l~ 271 (315)
T KOG0279|consen 211 GKDGEAMLWDLNEGKNLYSL-EAFDIVNSLCFSPNRYWLCAA-TATSIKIWDLESKAVVEELK 271 (315)
T ss_pred CCCceEEEEEccCCceeEec-cCCCeEeeEEecCCceeEeec-cCCceEEEeccchhhhhhcc
Confidence 99999999999988886665 477889999999986666555 45559999999998876653
No 11
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=8.6e-33 Score=201.94 Aligned_cols=214 Identities=18% Similarity=0.265 Sum_probs=181.3
Q ss_pred cceeeeCccccEEEEEECcCCCEEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCCeE
Q 026765 12 HSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTV 91 (233)
Q Consensus 12 ~~~~~~~H~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i 91 (233)
..+++.||.+.|+++.|++|+++++|+|.||.+.|||.-+. .+...+ +-....|-.++|+|.+ +++++|+-|...
T Consensus 47 ~rr~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~Tt--nK~hai--pl~s~WVMtCA~sPSg-~~VAcGGLdN~C 121 (343)
T KOG0286|consen 47 TRRTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTT--NKVHAI--PLPSSWVMTCAYSPSG-NFVACGGLDNKC 121 (343)
T ss_pred eEEEecccccceeeeEecCCcCeEEeeccCCeEEEEEcccc--cceeEE--ecCceeEEEEEECCCC-CeEEecCcCcee
Confidence 34789999999999999999999999999999999997542 233333 3346789999999985 689999999999
Q ss_pred EEEECCCCe------eeeeeeec-CCeeEEEECCCCCeEEEEcCCCcEEEEEcCCCeeeeeee-cCceeeEEEECC-CCC
Q 026765 92 RLWDARSGK------CSQQAELS-GENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRK-FGYEVNEIAWNM-TGE 162 (233)
Q Consensus 92 ~iwd~~~~~------~~~~~~~~-~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~-~~~~~~~~~~~~-~~~ 162 (233)
.||++.+.. ..+.+..+ +-.-++.|.+ ...|++++.|.++.+||+++.+.+..+. +...+.++++.| +++
T Consensus 122 siy~ls~~d~~g~~~v~r~l~gHtgylScC~f~d-D~~ilT~SGD~TCalWDie~g~~~~~f~GH~gDV~slsl~p~~~n 200 (343)
T KOG0286|consen 122 SIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLD-DNHILTGSGDMTCALWDIETGQQTQVFHGHTGDVMSLSLSPSDGN 200 (343)
T ss_pred EEEecccccccccceeeeeecCccceeEEEEEcC-CCceEecCCCceEEEEEcccceEEEEecCCcccEEEEecCCCCCC
Confidence 999997541 22223222 2334577766 5688899999999999999998887654 556799999999 999
Q ss_pred EEEEEeCCCeEEEEecCCceeeeEEeeecCceeEEEECCCCCEEEEeeCCCcEEEEecCCcEEEEeeec
Q 026765 163 MFFLTTGNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTK 231 (233)
Q Consensus 163 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~las~s~dg~v~iwd~~~~~~i~~~~~ 231 (233)
.+++++.|+..++||.+.+...++|.+|...|++|+|.|+|.-+++||+|++.++||++....+..|+.
T Consensus 201 tFvSg~cD~~aklWD~R~~~c~qtF~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~ 269 (343)
T KOG0286|consen 201 TFVSGGCDKSAKLWDVRSGQCVQTFEGHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQELAVYSH 269 (343)
T ss_pred eEEecccccceeeeeccCcceeEeecccccccceEEEccCCCeeeecCCCceeEEEeecCCcEEeeecc
Confidence 999999999999999999999999999999999999999999999999999999999999888888764
No 12
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=4.2e-33 Score=228.13 Aligned_cols=217 Identities=24% Similarity=0.418 Sum_probs=186.3
Q ss_pred cceeeeCccccEEEEEECcCCCEEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCCeE
Q 026765 12 HSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTV 91 (233)
Q Consensus 12 ~~~~~~~H~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i 91 (233)
..+++.+|...|++++|+|+++++++|+.|+++||||+... ......+++|...|++++|+|.+ ++++||+.|++|
T Consensus 195 ~~~~l~~h~~~v~~~~fs~d~~~l~s~s~D~tiriwd~~~~---~~~~~~l~gH~~~v~~~~f~p~g-~~i~Sgs~D~tv 270 (456)
T KOG0266|consen 195 LLRELSGHTRGVSDVAFSPDGSYLLSGSDDKTLRIWDLKDD---GRNLKTLKGHSTYVTSVAFSPDG-NLLVSGSDDGTV 270 (456)
T ss_pred hhccccccccceeeeEECCCCcEEEEecCCceEEEeeccCC---CeEEEEecCCCCceEEEEecCCC-CEEEEecCCCcE
Confidence 34566899999999999999999999999999999999321 12344678999999999999998 899999999999
Q ss_pred EEEECCCCeeeeeeeecC-CeeEEEECCCCCeEEEEcCCCcEEEEEcCCCee--eeeee-c-Cc-eeeEEEECCCCCEEE
Q 026765 92 RLWDARSGKCSQQAELSG-ENINITYKPDGTHIAVGNRDDELTILDVRKFKP--IHRRK-F-GY-EVNEIAWNMTGEMFF 165 (233)
Q Consensus 92 ~iwd~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~--~~~~~-~-~~-~~~~~~~~~~~~~~~ 165 (233)
+|||++++++...+..+. .+..++|+++++++++++.|+.+++||+.+... ..... . .. .+..+.|+|++++++
T Consensus 271 riWd~~~~~~~~~l~~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll 350 (456)
T KOG0266|consen 271 RIWDVRTGECVRKLKGHSDGISGLAFSPDGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLL 350 (456)
T ss_pred EEEeccCCeEEEeeeccCCceEEEEECCCCCEEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEE
Confidence 999999999988887664 556799999999999999999999999998873 22222 1 12 589999999999999
Q ss_pred EEeCCCeEEEEecCCceeeeEEeeecCcee---EEEECCCCCEEEEeeCCCcEEEEecCCcEEEEeeecC
Q 026765 166 LTTGNGTVEVLTYPSLRPLDTVVAHTAGCY---CIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKL 232 (233)
Q Consensus 166 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~---~i~~~p~~~~las~s~dg~v~iwd~~~~~~i~~~~~~ 232 (233)
++..|+.+++|++...+....+.+|...+. +...++.++++.+|+.|+.|++||+.++..++.++++
T Consensus 351 ~~~~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~~~~~l~~h 420 (456)
T KOG0266|consen 351 SASLDRTLKLWDLRSGKSVGTYTGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSGGILQRLEGH 420 (456)
T ss_pred EecCCCeEEEEEccCCcceeeecccCCcceeEecccccCCCCeEEEEeCCceEEEEeCCccchhhhhcCC
Confidence 999999999999999999999999887543 3455788999999999999999999998888777665
No 13
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=8e-34 Score=228.98 Aligned_cols=225 Identities=21% Similarity=0.327 Sum_probs=193.5
Q ss_pred CCccceeeeCccccEEEEEECcCCCEEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCC
Q 026765 9 KNLHSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGD 88 (233)
Q Consensus 9 ~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d 88 (233)
+.+..+.+.||+..|.+++...+|.+|+|||.|++|++|.++.............||...|.+++++..+..+++++|.|
T Consensus 354 ~~~~c~ii~GH~e~vlSL~~~~~g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D 433 (775)
T KOG0319|consen 354 PTSYCQIIPGHTEAVLSLDVWSSGDLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQD 433 (775)
T ss_pred CCCceEEEeCchhheeeeeecccCcEEEEecCCceEEEEEecCCcchhhhhhhhcccccccceeeecccCccEEEEecCC
Confidence 45566788999999999997678899999999999999998543222223335679999999999988888899999999
Q ss_pred CeEEEEECCCCeeee---e-------eeecCCeeEEEECCCCCeEEEEcCCCcEEEEEcCCCeeeeeee-cCceeeEEEE
Q 026765 89 KTVRLWDARSGKCSQ---Q-------AELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRK-FGYEVNEIAW 157 (233)
Q Consensus 89 ~~i~iwd~~~~~~~~---~-------~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~-~~~~~~~~~~ 157 (233)
+++++|++...+... . ..+...+.+++++|+.+.+++|+.|++.++|+++..+...... +...+.++.|
T Consensus 434 ~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~~l~~vLsGH~RGvw~V~F 513 (775)
T KOG0319|consen 434 CTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQLRLLGVLSGHTRGVWCVSF 513 (775)
T ss_pred ceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCCceEEecccccceeeecccCceEEEEeeCCccceEEEEe
Confidence 999999997632111 1 1134566789999999999999999999999999766665543 5668999999
Q ss_pred CCCCCEEEEEeCCCeEEEEecCCceeeeEEeeecCceeEEEECCCCCEEEEeeCCCcEEEEecCCcEEEEeeecCC
Q 026765 158 NMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLE 233 (233)
Q Consensus 158 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~las~s~dg~v~iwd~~~~~~i~~~~~~~ 233 (233)
++..+.+++.++|.+++||.+.++.++++|.||...|.-++|-.+|+.|++|+.||-|+|||+++.+|++++.+|+
T Consensus 514 s~~dq~laT~SgD~TvKIW~is~fSClkT~eGH~~aVlra~F~~~~~qliS~~adGliKlWnikt~eC~~tlD~H~ 589 (775)
T KOG0319|consen 514 SKNDQLLATCSGDKTVKIWSISTFSCLKTFEGHTSAVLRASFIRNGKQLISAGADGLIKLWNIKTNECEMTLDAHN 589 (775)
T ss_pred ccccceeEeccCCceEEEEEeccceeeeeecCccceeEeeeeeeCCcEEEeccCCCcEEEEeccchhhhhhhhhcc
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999998874
No 14
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=7.9e-34 Score=230.47 Aligned_cols=217 Identities=20% Similarity=0.382 Sum_probs=186.1
Q ss_pred eeeCccccEEEEEECcCCCEEEEEeCCCCEEEEecccCC---------------------------CCceeeEEEecCcC
Q 026765 15 EYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHG---------------------------HGKVKDIELRGHAD 67 (233)
Q Consensus 15 ~~~~H~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~---------------------------~~~~~~~~~~~h~~ 67 (233)
++..-...++|+.|++|+++||-|-.|-.|++|.+.+.. .+.....++-||.+
T Consensus 373 T~~nt~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~G 452 (707)
T KOG0263|consen 373 TFHNTYQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHSG 452 (707)
T ss_pred EEEEcCCcceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecCCC
Confidence 444446679999999999999999999999999876311 01112235789999
Q ss_pred cEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeeeeec-CCeeEEEECCCCCeEEEEcCCCcEEEEEcCCCeeeeee
Q 026765 68 SVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELS-GENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRR 146 (233)
Q Consensus 68 ~v~~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~ 146 (233)
+|+.+.|+|+. ++|+|++.|+++|+|.+++..+......+ .++..+.|+|-|-++++++.|++.++|......+....
T Consensus 453 PVyg~sFsPd~-rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~GyYFatas~D~tArLWs~d~~~PlRif 531 (707)
T KOG0263|consen 453 PVYGCSFSPDR-RFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRGYYFATASHDQTARLWSTDHNKPLRIF 531 (707)
T ss_pred ceeeeeecccc-cceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCceEEEecCCCceeeeeecccCCchhhh
Confidence 99999999985 68899999999999999998887666544 45677999999999999999999999998776665432
Q ss_pred e-cCceeeEEEECCCCCEEEEEeCCCeEEEEecCCceeeeEEeeecCceeEEEECCCCCEEEEeeCCCcEEEEecCCcEE
Q 026765 147 K-FGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLC 225 (233)
Q Consensus 147 ~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~las~s~dg~v~iwd~~~~~~ 225 (233)
. +-..+.++.|||+.++++.|+.|.++++||..++..++-|.||.++|.+++|||+|++||+|+.||.|+|||+..+..
T Consensus 532 aghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~ 611 (707)
T KOG0263|consen 532 AGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNSVRIFTGHKGPVTALAFSPCGRYLASGDEDGLIKIWDLANGSL 611 (707)
T ss_pred cccccccceEEECCcccccccCCCCceEEEEEcCCCcEEEEecCCCCceEEEEEcCCCceEeecccCCcEEEEEcCCCcc
Confidence 2 345799999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred EEeeecC
Q 026765 226 VRTFTKL 232 (233)
Q Consensus 226 i~~~~~~ 232 (233)
+.+|.++
T Consensus 612 v~~l~~H 618 (707)
T KOG0263|consen 612 VKQLKGH 618 (707)
T ss_pred hhhhhcc
Confidence 8887654
No 15
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=4.9e-33 Score=203.78 Aligned_cols=215 Identities=23% Similarity=0.372 Sum_probs=184.2
Q ss_pred eeeeCccccEEEEEECcCCCEEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCCeEEE
Q 026765 14 REYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRL 93 (233)
Q Consensus 14 ~~~~~H~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~i 93 (233)
..+.+|++.|+.+.|+|+|..|||||.|..|.+|++... .+ ....+++|+++|..+.|.+++ ..++|++.|++++.
T Consensus 41 m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gd-ce--N~~~lkgHsgAVM~l~~~~d~-s~i~S~gtDk~v~~ 116 (338)
T KOG0265|consen 41 MLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGD-CE--NFWVLKGHSGAVMELHGMRDG-SHILSCGTDKTVRG 116 (338)
T ss_pred hhcCCCcceEEEEEECCCCCeEeecCCcceEEEEecccc-cc--ceeeeccccceeEeeeeccCC-CEEEEecCCceEEE
Confidence 456799999999999999999999999999999997532 12 234577999999999999986 56789999999999
Q ss_pred EECCCCeeeeeeeecCCeeE-EEECCCC-CeEEEEcCCCcEEEEEcCCCeeeeeeecCceeeEEEECCCCCEEEEEeCCC
Q 026765 94 WDARSGKCSQQAELSGENIN-ITYKPDG-THIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNG 171 (233)
Q Consensus 94 wd~~~~~~~~~~~~~~~~~~-~~~~~~~-~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (233)
||+++|++...+..+...++ +.-+.-| ..+.+++.|+++++||+|+...++......+++.+.|..++..+++|+-|+
T Consensus 117 wD~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~~kyqltAv~f~d~s~qv~sggIdn 196 (338)
T KOG0265|consen 117 WDAETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFENKYQLTAVGFKDTSDQVISGGIDN 196 (338)
T ss_pred EecccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccccceeEEEEEecccccceeeccccC
Confidence 99999999887776655544 3212122 356688889999999999988888777778999999999999999999999
Q ss_pred eEEEEecCCceeeeEEeeecCceeEEEECCCCCEEEEeeCCCcEEEEecCC----cEEEEeeecC
Q 026765 172 TVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISE----MLCVRTFTKL 232 (233)
Q Consensus 172 ~v~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~las~s~dg~v~iwd~~~----~~~i~~~~~~ 232 (233)
.+++||++.......+.+|...|+.++.+|+|.++.+-+-|.++++||++. -.|++.|+++
T Consensus 197 ~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~ 261 (338)
T KOG0265|consen 197 DIKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGH 261 (338)
T ss_pred ceeeeccccCcceEEeecccCceeeEEeccCCCccccccccceEEEEEecccCCCCceEEEeecc
Confidence 999999999899999999999999999999999999999999999999873 3458888764
No 16
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=2.1e-32 Score=195.94 Aligned_cols=218 Identities=19% Similarity=0.328 Sum_probs=185.5
Q ss_pred CCCCCCCCCccc----eeeeCccccEEEEEECcCCCEEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCC
Q 026765 2 GESSIPFKNLHS----REYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPK 77 (233)
Q Consensus 2 ~~~~~~~~~~~~----~~~~~H~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~ 77 (233)
++-+|+|++.+. +++..-...|+.+...|+++.||.|+. ..||+||++..+.. ....+.+|+..|..+.|..+
T Consensus 18 YDhTIRfWqa~tG~C~rTiqh~dsqVNrLeiTpdk~~LAaa~~-qhvRlyD~~S~np~--Pv~t~e~h~kNVtaVgF~~d 94 (311)
T KOG0315|consen 18 YDHTIRFWQALTGICSRTIQHPDSQVNRLEITPDKKDLAAAGN-QHVRLYDLNSNNPN--PVATFEGHTKNVTAVGFQCD 94 (311)
T ss_pred CcceeeeeehhcCeEEEEEecCccceeeEEEcCCcchhhhccC-CeeEEEEccCCCCC--ceeEEeccCCceEEEEEeec
Confidence 455777876643 666645677999999999999999884 88999999865443 34568899999999999976
Q ss_pred CCCEEEEEeCCCeEEEEECCCCeeeeeeeecCCeeEEEECCCCCeEEEEcCCCcEEEEEcCCCeeeeeee--cCceeeEE
Q 026765 78 HADLIATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRK--FGYEVNEI 155 (233)
Q Consensus 78 ~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~--~~~~~~~~ 155 (233)
++.+++|+.||+++|||++...+.+.+....++.++..+|+...|++|..+|.|++||++.....+..- ....+.++
T Consensus 95 -grWMyTgseDgt~kIWdlR~~~~qR~~~~~spVn~vvlhpnQteLis~dqsg~irvWDl~~~~c~~~liPe~~~~i~sl 173 (311)
T KOG0315|consen 95 -GRWMYTGSEDGTVKIWDLRSLSCQRNYQHNSPVNTVVLHPNQTELISGDQSGNIRVWDLGENSCTHELIPEDDTSIQSL 173 (311)
T ss_pred -CeEEEecCCCceEEEEeccCcccchhccCCCCcceEEecCCcceEEeecCCCcEEEEEccCCccccccCCCCCcceeeE
Confidence 478999999999999999998888888888888899999999999999999999999998654333221 23468899
Q ss_pred EECCCCCEEEEEeCCCeEEEEecCC------ceeeeEEeeecCceeEEEECCCCCEEEEeeCCCcEEEEecCCc
Q 026765 156 AWNMTGEMFFLTTGNGTVEVLTYPS------LRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEM 223 (233)
Q Consensus 156 ~~~~~~~~~~~~~~~~~v~~~~~~~------~~~~~~~~~~~~~v~~i~~~p~~~~las~s~dg~v~iwd~~~~ 223 (233)
...++|..++++...|++++|++.. .+++.++..|..-+..+.+||++++||++|.|.+++||+.+..
T Consensus 174 ~v~~dgsml~a~nnkG~cyvW~l~~~~~~s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~ 247 (311)
T KOG0315|consen 174 TVMPDGSMLAAANNKGNCYVWRLLNHQTASELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDF 247 (311)
T ss_pred EEcCCCcEEEEecCCccEEEEEccCCCccccceEhhheecccceEEEEEECCCCcEEEeecCCceEEEEecCCc
Confidence 9999999999999999999999753 4677788899999999999999999999999999999999977
No 17
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=1.7e-33 Score=210.74 Aligned_cols=213 Identities=21% Similarity=0.350 Sum_probs=191.0
Q ss_pred eeeeCccccEEEEEECcCCCEEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCCeEEE
Q 026765 14 REYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRL 93 (233)
Q Consensus 14 ~~~~~H~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~i 93 (233)
+.+.+|.+-|.|+++.|.+.+|+||+.|++++|||+.+. .....+.||...|..+++++..+ ++++++.|++|+.
T Consensus 145 rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg----~LkltltGhi~~vr~vavS~rHp-YlFs~gedk~VKC 219 (460)
T KOG0285|consen 145 RVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATG----QLKLTLTGHIETVRGVAVSKRHP-YLFSAGEDKQVKC 219 (460)
T ss_pred hhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccC----eEEEeecchhheeeeeeecccCc-eEEEecCCCeeEE
Confidence 678899999999999999999999999999999999752 24457889999999999999876 5679999999999
Q ss_pred EECCCCeeeeeeeec-CCeeEEEECCCCCeEEEEcCCCcEEEEEcCCCeeeeeee-cCceeeEEEECCCCCEEEEEeCCC
Q 026765 94 WDARSGKCSQQAELS-GENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRK-FGYEVNEIAWNMTGEMFFLTTGNG 171 (233)
Q Consensus 94 wd~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 171 (233)
||+...+.++....+ ..+++++.+|.-+.|++|+.|..+++||+|+...++.+. +..++..+.+.+....+++++.|+
T Consensus 220 wDLe~nkvIR~YhGHlS~V~~L~lhPTldvl~t~grDst~RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvit~S~D~ 299 (460)
T KOG0285|consen 220 WDLEYNKVIRHYHGHLSGVYCLDLHPTLDVLVTGGRDSTIRVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVITGSHDS 299 (460)
T ss_pred EechhhhhHHHhccccceeEEEeccccceeEEecCCcceEEEeeecccceEEEecCCCCcceeEEeecCCCceEEecCCc
Confidence 999988876655443 457889999999999999999999999999988887766 677899999999999999999999
Q ss_pred eEEEEecCCceeeeEEeeecCceeEEEECCCCCEEEEeeCCCcEEEEecCCcEEEEeeecC
Q 026765 172 TVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKL 232 (233)
Q Consensus 172 ~v~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~las~s~dg~v~iwd~~~~~~i~~~~~~ 232 (233)
+|++||+..++.+.++..|...|.+++.+|....+|+++.|. |+-|++..++.++.+.++
T Consensus 300 tvrlWDl~agkt~~tlt~hkksvral~lhP~e~~fASas~dn-ik~w~~p~g~f~~nlsgh 359 (460)
T KOG0285|consen 300 TVRLWDLRAGKTMITLTHHKKSVRALCLHPKENLFASASPDN-IKQWKLPEGEFLQNLSGH 359 (460)
T ss_pred eEEEeeeccCceeEeeecccceeeEEecCCchhhhhccCCcc-ceeccCCccchhhccccc
Confidence 999999999999999999999999999999999999999886 899999999988876654
No 18
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=7.6e-32 Score=195.09 Aligned_cols=210 Identities=26% Similarity=0.470 Sum_probs=173.9
Q ss_pred CccceeeeCccccEEEEEECcC-CCEEEEEeCCCCEEEEecccCCCCceeeE-EEecCcCcEEEEEEcCCCCCEEEEEeC
Q 026765 10 NLHSREYTGHKKKVHSVAWNCT-GTKLASGSVDQTARVWHIEPHGHGKVKDI-ELRGHADSVDQLCWDPKHADLIATASG 87 (233)
Q Consensus 10 ~~~~~~~~~H~~~V~~~~~~~~-~~~l~s~~~D~~v~vW~~~~~~~~~~~~~-~~~~h~~~v~~~~~~~~~~~~l~sg~~ 87 (233)
....+.+.+|++.|..++|+|- |..|||||.|+.||+|+... .....+.. .-.+|+..|++++|+|.+ ++|++|+.
T Consensus 4 l~~~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~-~~s~~ck~vld~~hkrsVRsvAwsp~g-~~La~aSF 81 (312)
T KOG0645|consen 4 LILEQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSS-GDSWTCKTVLDDGHKRSVRSVAWSPHG-RYLASASF 81 (312)
T ss_pred ceeEEeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCC-CCcEEEEEeccccchheeeeeeecCCC-cEEEEeec
Confidence 3456788999999999999998 88999999999999999863 12222221 224799999999999986 58999999
Q ss_pred CCeEEEEECCCCe--eeeeeeec-CCeeEEEECCCCCeEEEEcCCCcEEEEEcCCCee---eee-eecCceeeEEEECCC
Q 026765 88 DKTVRLWDARSGK--CSQQAELS-GENINITYKPDGTHIAVGNRDDELTILDVRKFKP---IHR-RKFGYEVNEIAWNMT 160 (233)
Q Consensus 88 d~~i~iwd~~~~~--~~~~~~~~-~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~---~~~-~~~~~~~~~~~~~~~ 160 (233)
|.++.||.-..+. +...++.+ .++.+++|+++|++||+++.|+.+-||....... +.. ..+...+-.+.|+|.
T Consensus 82 D~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~deddEfec~aVL~~HtqDVK~V~WHPt 161 (312)
T KOG0645|consen 82 DATVVIWKKEDGEFECVATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDDEFECIAVLQEHTQDVKHVIWHPT 161 (312)
T ss_pred cceEEEeecCCCceeEEeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCCcEEEEeeeccccccccEEEEcCC
Confidence 9999999876553 44455443 5678899999999999999999999999864332 222 224567899999999
Q ss_pred CCEEEEEeCCCeEEEEecC---CceeeeEEeeecCceeEEEECCCCCEEEEeeCCCcEEEEecC
Q 026765 161 GEMFFLTTGNGTVEVLTYP---SLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDIS 221 (233)
Q Consensus 161 ~~~~~~~~~~~~v~~~~~~---~~~~~~~~~~~~~~v~~i~~~p~~~~las~s~dg~v~iwd~~ 221 (233)
..++++++-|++|++|... +.+...++.+|...|++++|+|.|..|++++.|++|+||.+-
T Consensus 162 ~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~ 225 (312)
T KOG0645|consen 162 EDLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLY 225 (312)
T ss_pred cceeEEeccCCeEEEEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecCCcceEeeeec
Confidence 9999999999999999765 457889999999999999999999999999999999999843
No 19
>PTZ00421 coronin; Provisional
Probab=100.00 E-value=1.8e-31 Score=218.49 Aligned_cols=216 Identities=19% Similarity=0.298 Sum_probs=170.7
Q ss_pred eeeeCccccEEEEEECc-CCCEEEEEeCCCCEEEEecccCCCC---ceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCC
Q 026765 14 REYTGHKKKVHSVAWNC-TGTKLASGSVDQTARVWHIEPHGHG---KVKDIELRGHADSVDQLCWDPKHADLIATASGDK 89 (233)
Q Consensus 14 ~~~~~H~~~V~~~~~~~-~~~~l~s~~~D~~v~vW~~~~~~~~---~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~ 89 (233)
..+.+|.+.|++++|+| ++++|+||+.|++|++|++...... ......+.+|...|.+++|+|.+.++|++|+.|+
T Consensus 69 ~~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~Dg 148 (493)
T PTZ00421 69 PILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADM 148 (493)
T ss_pred ceEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCC
Confidence 35789999999999999 7899999999999999998653211 0123467899999999999998777899999999
Q ss_pred eEEEEECCCCeeeeeeee-cCCeeEEEECCCCCeEEEEcCCCcEEEEEcCCCeeeeeeecC--ceeeEEEECCCCCEEEE
Q 026765 90 TVRLWDARSGKCSQQAEL-SGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFG--YEVNEIAWNMTGEMFFL 166 (233)
Q Consensus 90 ~i~iwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~ 166 (233)
.|+|||+++++....+.. ...+.+++|+|++..|++++.|+.|++||+++.+.+...... .....+.|.+++..+++
T Consensus 149 tVrIWDl~tg~~~~~l~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt 228 (493)
T PTZ00421 149 VVNVWDVERGKAVEVIKCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIIT 228 (493)
T ss_pred EEEEEECCCCeEEEEEcCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEE
Confidence 999999998887666553 345778999999999999999999999999988776554422 22446788888887776
Q ss_pred Ee----CCCeEEEEecCCce-eeeEEeeec-CceeEEEECCCCCEEEEee-CCCcEEEEecCCcEEEEee
Q 026765 167 TT----GNGTVEVLTYPSLR-PLDTVVAHT-AGCYCIAIDPMGRYFAVGS-ADSLVSLWDISEMLCVRTF 229 (233)
Q Consensus 167 ~~----~~~~v~~~~~~~~~-~~~~~~~~~-~~v~~i~~~p~~~~las~s-~dg~v~iwd~~~~~~i~~~ 229 (233)
.+ .|+.+++||.+... ++.....+. ..+....|++++++|++|+ .|+.|++||+.++.++..+
T Consensus 229 ~G~s~s~Dr~VklWDlr~~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~~ 298 (493)
T PTZ00421 229 LGCSKSQQRQIMLWDTRKMASPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTFCS 298 (493)
T ss_pred EecCCCCCCeEEEEeCCCCCCceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEEEe
Confidence 54 47899999997653 333333233 3455677999999998887 5999999999988876654
No 20
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=5.1e-32 Score=221.77 Aligned_cols=217 Identities=25% Similarity=0.432 Sum_probs=185.7
Q ss_pred ceeeeCc-cccEEEEEECcCCCEEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCCeE
Q 026765 13 SREYTGH-KKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTV 91 (233)
Q Consensus 13 ~~~~~~H-~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i 91 (233)
...+.+| ...|.++.|+++|+.+++++.|+.+++|+...... ....++.+|...|++++|+|++ .++++|+.|++|
T Consensus 151 ~~~~~~~~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~--~~~~~l~~h~~~v~~~~fs~d~-~~l~s~s~D~ti 227 (456)
T KOG0266|consen 151 EQTLAGHECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKS--NLLRELSGHTRGVSDVAFSPDG-SYLLSGSDDKTL 227 (456)
T ss_pred eeeecccccCceEEEEEcCCCCeEEEccCCCcEEEeecccccc--hhhccccccccceeeeEECCCC-cEEEEecCCceE
Confidence 4555555 89999999999999999999999999999843221 1223457999999999999986 588999999999
Q ss_pred EEEEC-CCCeeeeeeee-cCCeeEEEECCCCCeEEEEcCCCcEEEEEcCCCeeeeeee-cCceeeEEEECCCCCEEEEEe
Q 026765 92 RLWDA-RSGKCSQQAEL-SGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRK-FGYEVNEIAWNMTGEMFFLTT 168 (233)
Q Consensus 92 ~iwd~-~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 168 (233)
+|||+ ..+.+.+.+.. ...+.+++|+|+++.+++|+.|++|++||+++.+...... +...+..++|+++++++++++
T Consensus 228 riwd~~~~~~~~~~l~gH~~~v~~~~f~p~g~~i~Sgs~D~tvriWd~~~~~~~~~l~~hs~~is~~~f~~d~~~l~s~s 307 (456)
T KOG0266|consen 228 RIWDLKDDGRNLKTLKGHSTYVTSVAFSPDGNLLVSGSDDGTVRIWDVRTGECVRKLKGHSDGISGLAFSPDGNLLVSAS 307 (456)
T ss_pred EEeeccCCCeEEEEecCCCCceEEEEecCCCCEEEEecCCCcEEEEeccCCeEEEeeeccCCceEEEEECCCCCEEEEcC
Confidence 99999 44466666654 3567889999999999999999999999999987776655 456899999999999999999
Q ss_pred CCCeEEEEecCCce--eeeEEeeecCc--eeEEEECCCCCEEEEeeCCCcEEEEecCCcEEEEeeecC
Q 026765 169 GNGTVEVLTYPSLR--PLDTVVAHTAG--CYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKL 232 (233)
Q Consensus 169 ~~~~v~~~~~~~~~--~~~~~~~~~~~--v~~i~~~p~~~~las~s~dg~v~iwd~~~~~~i~~~~~~ 232 (233)
.|+.+++||..++. +...+.++... +.++.|+|++.+|++++.|+.+++||+..+.+++++.++
T Consensus 308 ~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~~ 375 (456)
T KOG0266|consen 308 YDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYTGH 375 (456)
T ss_pred CCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeeeccc
Confidence 99999999999888 45677776665 899999999999999999999999999999999998876
No 21
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=100.00 E-value=6.1e-34 Score=220.01 Aligned_cols=217 Identities=21% Similarity=0.389 Sum_probs=181.8
Q ss_pred cceeeeCccccEEEEEECc-CCCEEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCCe
Q 026765 12 HSREYTGHKKKVHSVAWNC-TGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKT 90 (233)
Q Consensus 12 ~~~~~~~H~~~V~~~~~~~-~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~ 90 (233)
++..|.||+..|+++.|.| .+.+|+||+.|+.|+||++-.. .-+...+.+|..+|.+++|++.+.. ++|++.|+.
T Consensus 206 ~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~---~~~lrtf~gH~k~Vrd~~~s~~g~~-fLS~sfD~~ 281 (503)
T KOG0282|consen 206 LSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDD---RRCLRTFKGHRKPVRDASFNNCGTS-FLSASFDRF 281 (503)
T ss_pred heeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecC---cceehhhhcchhhhhhhhccccCCe-eeeeeccee
Confidence 4468999999999999999 8899999999999999998642 1233468899999999999998765 569999999
Q ss_pred EEEEECCCCeeeeeeeecCCeeEEEECCCC-CeEEEEcCCCcEEEEEcCCCeeeeeeec-CceeeEEEECCCCCEEEEEe
Q 026765 91 VRLWDARSGKCSQQAELSGENINITYKPDG-THIAVGNRDDELTILDVRKFKPIHRRKF-GYEVNEIAWNMTGEMFFLTT 168 (233)
Q Consensus 91 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~d~~i~i~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 168 (233)
+++||+++|++...+.......++.|+|++ +.+++|+.|+.|+.||+|+++.++.+.. -..++.+.|-++++.+++++
T Consensus 282 lKlwDtETG~~~~~f~~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFissS 361 (503)
T KOG0282|consen 282 LKLWDTETGQVLSRFHLDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQEYDRHLGAILDITFVDEGRRFISSS 361 (503)
T ss_pred eeeeccccceEEEEEecCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHHHHHhhhhheeeeEEccCCceEeeec
Confidence 999999999999999988889999999998 7888999999999999999988776653 34688999999999999999
Q ss_pred CCCeEEEEecCCceeee----------------------------------------------EEeeecCc--eeEEEEC
Q 026765 169 GNGTVEVLTYPSLRPLD----------------------------------------------TVVAHTAG--CYCIAID 200 (233)
Q Consensus 169 ~~~~v~~~~~~~~~~~~----------------------------------------------~~~~~~~~--v~~i~~~ 200 (233)
.++++++|+.+..-+++ .+.+|... ...+.||
T Consensus 362 Ddks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fS 441 (503)
T KOG0282|consen 362 DDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFS 441 (503)
T ss_pred cCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccCceeeEEEc
Confidence 99999999975432221 11223221 2357899
Q ss_pred CCCCEEEEeeCCCcEEEEecCCcEEEEeeecC
Q 026765 201 PMGRYFAVGSADSLVSLWDISEMLCVRTFTKL 232 (233)
Q Consensus 201 p~~~~las~s~dg~v~iwd~~~~~~i~~~~~~ 232 (233)
|||++|++|+.||.+.+||-++...+..++.+
T Consensus 442 pDG~~l~SGdsdG~v~~wdwkt~kl~~~lkah 473 (503)
T KOG0282|consen 442 PDGRTLCSGDSDGKVNFWDWKTTKLVSKLKAH 473 (503)
T ss_pred CCCCeEEeecCCccEEEeechhhhhhhccccC
Confidence 99999999999999999999988877776654
No 22
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=100.00 E-value=2.6e-33 Score=200.90 Aligned_cols=201 Identities=23% Similarity=0.416 Sum_probs=182.1
Q ss_pred CccccEEEEEECcCCCEEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCCeEEEEECC
Q 026765 18 GHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDAR 97 (233)
Q Consensus 18 ~H~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~iwd~~ 97 (233)
.|+-.|.+++|+.|.++|+||+.++.+||+|++... ....++.+|++.|..+.|...+ +.|+|+..|++||+||.+
T Consensus 98 ~hkhivk~~af~~ds~~lltgg~ekllrvfdln~p~---App~E~~ghtg~Ir~v~wc~eD-~~iLSSadd~tVRLWD~r 173 (334)
T KOG0278|consen 98 EHKHIVKAVAFSQDSNYLLTGGQEKLLRVFDLNRPK---APPKEISGHTGGIRTVLWCHED-KCILSSADDKTVRLWDHR 173 (334)
T ss_pred hhhheeeeEEecccchhhhccchHHHhhhhhccCCC---CCchhhcCCCCcceeEEEeccC-ceEEeeccCCceEEEEec
Confidence 489999999999999999999999999999987432 2345788999999999998765 567788999999999999
Q ss_pred CCeeeeeeeecCCeeEEEECCCCCeEEEEcCCCcEEEEEcCCCeeeeeeecCceeeEEEECCCCCEEEEEeCCCeEEEEe
Q 026765 98 SGKCSQQAELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNGTVEVLT 177 (233)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 177 (233)
++..++.+.+..++.++.++++|+++.++ ..+.|.+||..+...+..+++...|++.+.+|+...+++|+.|..++.||
T Consensus 174 Tgt~v~sL~~~s~VtSlEvs~dG~ilTia-~gssV~Fwdaksf~~lKs~k~P~nV~SASL~P~k~~fVaGged~~~~kfD 252 (334)
T KOG0278|consen 174 TGTEVQSLEFNSPVTSLEVSQDGRILTIA-YGSSVKFWDAKSFGLLKSYKMPCNVESASLHPKKEFFVAGGEDFKVYKFD 252 (334)
T ss_pred cCcEEEEEecCCCCcceeeccCCCEEEEe-cCceeEEeccccccceeeccCccccccccccCCCceEEecCcceEEEEEe
Confidence 99999999999999999999999877544 45679999999999999999999999999999999999999999999999
Q ss_pred cCCceeeeEE-eeecCceeEEEECCCCCEEEEeeCCCcEEEEecCCc
Q 026765 178 YPSLRPLDTV-VAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEM 223 (233)
Q Consensus 178 ~~~~~~~~~~-~~~~~~v~~i~~~p~~~~las~s~dg~v~iwd~~~~ 223 (233)
+.+++.+..+ .+|.++|.|++|+|+|...|+||+||+|+||-+..+
T Consensus 253 y~TgeEi~~~nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~~~ 299 (334)
T KOG0278|consen 253 YNTGEEIGSYNKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQTTPG 299 (334)
T ss_pred ccCCceeeecccCCCCceEEEEECCCCceeeccCCCceEEEEEecCC
Confidence 9999988886 789999999999999999999999999999988755
No 23
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=7.5e-33 Score=207.42 Aligned_cols=216 Identities=25% Similarity=0.417 Sum_probs=186.5
Q ss_pred ceeeeCccccEEEEEECcCCCEEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCCeEE
Q 026765 13 SREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVR 92 (233)
Q Consensus 13 ~~~~~~H~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~ 92 (233)
.+.+.||++.|..++|+..|++|||++.|=.+++||.+.. ..++ ..+.+|...|.+++|-|.+ ..++|++.|.+|+
T Consensus 143 e~~LrGHt~sv~di~~~a~Gk~l~tcSsDl~~~LWd~~~~-~~c~--ks~~gh~h~vS~V~f~P~g-d~ilS~srD~tik 218 (406)
T KOG0295|consen 143 ERSLRGHTDSVFDISFDASGKYLATCSSDLSAKLWDFDTF-FRCI--KSLIGHEHGVSSVFFLPLG-DHILSCSRDNTIK 218 (406)
T ss_pred hhhhhccccceeEEEEecCccEEEecCCccchhheeHHHH-HHHH--HHhcCcccceeeEEEEecC-Ceeeeccccccee
Confidence 5678899999999999999999999999999999998642 2222 2356899999999999986 6788999999999
Q ss_pred EEECCCCeeeeeeeecCCe-eEEEECCCCCeEEEEcCCCcEEEEEcCCCeeee-eeecCceeeEEEECCC----------
Q 026765 93 LWDARSGKCSQQAELSGEN-INITYKPDGTHIAVGNRDDELTILDVRKFKPIH-RRKFGYEVNEIAWNMT---------- 160 (233)
Q Consensus 93 iwd~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~-~~~~~~~~~~~~~~~~---------- 160 (233)
.|++.++-|..++..+.+- ..++.+.||..+++++.|.++++|-+.+.+... ...+.+++.+++|.|.
T Consensus 219 ~We~~tg~cv~t~~~h~ewvr~v~v~~DGti~As~s~dqtl~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at 298 (406)
T KOG0295|consen 219 AWECDTGYCVKTFPGHSEWVRMVRVNQDGTIIASCSNDQTLRVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEAT 298 (406)
T ss_pred EEecccceeEEeccCchHhEEEEEecCCeeEEEecCCCceEEEEEeccchhhhhhhccccceEEEEecccccCcchhhcc
Confidence 9999999999888766543 457889999999999999999999988764322 2345677888888553
Q ss_pred -----CCEEEEEeCCCeEEEEecCCceeeeEEeeecCceeEEEECCCCCEEEEeeCCCcEEEEecCCcEEEEeeecC
Q 026765 161 -----GEMFFLTTGNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKL 232 (233)
Q Consensus 161 -----~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~las~s~dg~v~iwd~~~~~~i~~~~~~ 232 (233)
++++.+++.|+++++||..++.++.++.+|.+.|..++|+|.|+||+++.+|+++++||++.+.|+++...+
T Consensus 299 ~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah 375 (406)
T KOG0295|consen 299 GSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTLVGHDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLEAH 375 (406)
T ss_pred CCCCCccEEEeecccceEEEEeccCCeEEEEEecccceeeeeEEcCCCeEEEEEecCCcEEEEEeccceeeeccCCC
Confidence 357889999999999999999999999999999999999999999999999999999999999999987654
No 24
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1e-32 Score=209.91 Aligned_cols=215 Identities=21% Similarity=0.344 Sum_probs=168.8
Q ss_pred CCCCCCCccceeeeCccccEEEEEECcCCCEEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEE
Q 026765 4 SSIPFKNLHSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIA 83 (233)
Q Consensus 4 ~~~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~ 83 (233)
..+|+.+.+ .+..|++.|+-+.||++|++||||+.|.+..+|++.....-+ ....+.+|..+|..+.|+|++. +|+
T Consensus 210 ~qip~qt~q--il~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~k-l~~tlvgh~~~V~yi~wSPDdr-yLl 285 (519)
T KOG0293|consen 210 LQIPSQTWQ--ILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFK-LKKTLVGHSQPVSYIMWSPDDR-YLL 285 (519)
T ss_pred ccCCchhhh--hHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCccee-eeeeeecccCceEEEEECCCCC-eEE
Confidence 345555554 788999999999999999999999999999999987644322 2235779999999999999975 566
Q ss_pred EEeCCCeEEEEECCCCeeeeeeeec--CCeeEEEECCCCCeEEEEcCCCcEEEEEcCCCe----------eeeeee----
Q 026765 84 TASGDKTVRLWDARSGKCSQQAELS--GENINITYKPDGTHIAVGNRDDELTILDVRKFK----------PIHRRK---- 147 (233)
Q Consensus 84 sg~~d~~i~iwd~~~~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~----------~~~~~~---- 147 (233)
+++.|..+++||+.+|.+....... ..+.+++|.|||..+++|+.|+.+..||+.... .+....
T Consensus 286 aCg~~e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~~~~W~gvr~~~v~dlait~D 365 (519)
T KOG0293|consen 286 ACGFDEVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNILGNWEGVRDPKVHDLAITYD 365 (519)
T ss_pred ecCchHheeeccCCcchhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCCcchhhcccccccceeEEEEEcCC
Confidence 8888889999999999876655433 456789999999999999999999999864210 011110
Q ss_pred ----------------------------cCceeeEEEECCC---------------------------------------
Q 026765 148 ----------------------------FGYEVNEIAWNMT--------------------------------------- 160 (233)
Q Consensus 148 ----------------------------~~~~~~~~~~~~~--------------------------------------- 160 (233)
...++++...+.+
T Consensus 366 gk~vl~v~~d~~i~l~~~e~~~dr~lise~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~lv~kY~Ghkq~~fiIrS 445 (519)
T KOG0293|consen 366 GKYVLLVTVDKKIRLYNREARVDRGLISEEQPITSFSISKDGKLALVNLQDQEIHLWDLEENKLVRKYFGHKQGHFIIRS 445 (519)
T ss_pred CcEEEEEecccceeeechhhhhhhccccccCceeEEEEcCCCcEEEEEcccCeeEEeecchhhHHHHhhcccccceEEEe
Confidence 0112333333332
Q ss_pred ------CCEEEEEeCCCeEEEEecCCceeeeEEeeecCceeEEEECCCCC-EEEEeeCCCcEEEEecCC
Q 026765 161 ------GEMFFLTTGNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGR-YFAVGSADSLVSLWDISE 222 (233)
Q Consensus 161 ------~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~-~las~s~dg~v~iwd~~~ 222 (233)
..++++|++|+.|+||+..+++++..+.||...|+|++|+|... ++|+||.||+||||-...
T Consensus 446 CFgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsGHs~~vNcVswNP~~p~m~ASasDDgtIRIWg~~~ 514 (519)
T KOG0293|consen 446 CFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSGHSKTVNCVSWNPADPEMFASASDDGTIRIWGPSD 514 (519)
T ss_pred ccCCCCcceEEecCCCceEEEEEccCCceeEeecCCcceeeEEecCCCCHHHhhccCCCCeEEEecCCc
Confidence 34678899999999999999999999999999999999999775 689999999999998764
No 25
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=4.9e-32 Score=209.01 Aligned_cols=214 Identities=25% Similarity=0.417 Sum_probs=184.6
Q ss_pred cceeeeCccccEEEEEECcCCCEEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCCeE
Q 026765 12 HSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTV 91 (233)
Q Consensus 12 ~~~~~~~H~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i 91 (233)
.+.+|..|+++|.+|+|+..|++|+|++.|+++.+||...+. ....+.-|..+..++.|..+ .-+++.+.|+.|
T Consensus 268 l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ttilwd~~~g~----~~q~f~~~s~~~lDVdW~~~--~~F~ts~td~~i 341 (524)
T KOG0273|consen 268 LISTLGQHKGPIFSLKWNKKGTYILSGGVDGTTILWDAHTGT----VKQQFEFHSAPALDVDWQSN--DEFATSSTDGCI 341 (524)
T ss_pred hhhhhhccCCceEEEEEcCCCCEEEeccCCccEEEEeccCce----EEEeeeeccCCccceEEecC--ceEeecCCCceE
Confidence 346788999999999999999999999999999999986432 22345568888788899754 357899999999
Q ss_pred EEEECCCCeeeeeeee-cCCeeEEEECCCCCeEEEEcCCCcEEEEEcCCCeeeeeee-cCceeeEEEECCCCC-------
Q 026765 92 RLWDARSGKCSQQAEL-SGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRK-FGYEVNEIAWNMTGE------- 162 (233)
Q Consensus 92 ~iwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~-~~~~~~~~~~~~~~~------- 162 (233)
+|+.+...++..++.. ++++.++.|.|.+..|++++.|++++||.+......+.+. +..++..+.|+|+|.
T Consensus 342 ~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~ 421 (524)
T KOG0273|consen 342 HVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSNSVHDLQAHSKEIYTIKWSPTGPVTSNPNM 421 (524)
T ss_pred EEEEecCCCcceeeecccCceEEEEECCCCceEEEecCCCeeEeeecCCCcchhhhhhhccceeeEeecCCCCccCCCcC
Confidence 9999988877776664 4677789999999999999999999999987766665543 556788888988754
Q ss_pred --EEEEEeCCCeEEEEecCCceeeeEEeeecCceeEEEECCCCCEEEEeeCCCcEEEEecCCcEEEEeeec
Q 026765 163 --MFFLTTGNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTK 231 (233)
Q Consensus 163 --~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~las~s~dg~v~iwd~~~~~~i~~~~~ 231 (233)
.+++++.|+++++||...+.++..|..|..+|++++|+|+|+|+|+|+.||.|.||+.+.++.+++++.
T Consensus 422 ~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~pVysvafS~~g~ylAsGs~dg~V~iws~~~~~l~~s~~~ 492 (524)
T KOG0273|consen 422 NLMLASASFDSTVKLWDVESGVPIHTLMKHQEPVYSVAFSPNGRYLASGSLDGCVHIWSTKTGKLVKSYQG 492 (524)
T ss_pred CceEEEeecCCeEEEEEccCCceeEeeccCCCceEEEEecCCCcEEEecCCCCeeEeccccchheeEeecC
Confidence 578888999999999999999999999999999999999999999999999999999999999999875
No 26
>PTZ00420 coronin; Provisional
Probab=100.00 E-value=2.8e-30 Score=212.83 Aligned_cols=214 Identities=18% Similarity=0.215 Sum_probs=164.6
Q ss_pred ccceeeeCccccEEEEEECcC-CCEEEEEeCCCCEEEEecccCCCCc----eeeEEEecCcCcEEEEEEcCCCCCEEEEE
Q 026765 11 LHSREYTGHKKKVHSVAWNCT-GTKLASGSVDQTARVWHIEPHGHGK----VKDIELRGHADSVDQLCWDPKHADLIATA 85 (233)
Q Consensus 11 ~~~~~~~~H~~~V~~~~~~~~-~~~l~s~~~D~~v~vW~~~~~~~~~----~~~~~~~~h~~~v~~~~~~~~~~~~l~sg 85 (233)
.....+.+|.++|++++|+|+ +.+|||||.|++|+||++....... .....+.+|...|.+++|+|.+..+|++|
T Consensus 65 ~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSg 144 (568)
T PTZ00420 65 PPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKKKISIIDWNPMNYYIMCSS 144 (568)
T ss_pred ceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCCcEEEEEECCCCCeEEEEE
Confidence 345678899999999999997 7899999999999999986432100 01235678999999999999877778899
Q ss_pred eCCCeEEEEECCCCeeeeeeeecCCeeEEEECCCCCeEEEEcCCCcEEEEEcCCCeeeeeeec-Ccee-----eEEEECC
Q 026765 86 SGDKTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKF-GYEV-----NEIAWNM 159 (233)
Q Consensus 86 ~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~-~~~~-----~~~~~~~ 159 (233)
+.|+.|+|||+++++....+.....+.+++|+|+|..|++++.|+.+++||+++.+.+..... ...+ ....|++
T Consensus 145 S~DgtIrIWDl~tg~~~~~i~~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~tl~gH~g~~~s~~v~~~~fs~ 224 (568)
T PTZ00420 145 GFDSFVNIWDIENEKRAFQINMPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASSFHIHDGGKNTKNIWIDGLGG 224 (568)
T ss_pred eCCCeEEEEECCCCcEEEEEecCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEEEecccCCceeEEEEeeeEcC
Confidence 999999999999987666555556678899999999999999999999999998877655442 2122 2234568
Q ss_pred CCCEEEEEeCCC----eEEEEecCC-ceeeeEEeeec--CceeEEEECCCCCEEEEeeCCCcEEEEecCCcE
Q 026765 160 TGEMFFLTTGNG----TVEVLTYPS-LRPLDTVVAHT--AGCYCIAIDPMGRYFAVGSADSLVSLWDISEML 224 (233)
Q Consensus 160 ~~~~~~~~~~~~----~v~~~~~~~-~~~~~~~~~~~--~~v~~i~~~p~~~~las~s~dg~v~iwd~~~~~ 224 (233)
+++++++++.++ .+++||.+. .+++..+..+. ..+......+++.++++|+.|++|++|++..+.
T Consensus 225 d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD~tIr~~e~~~~~ 296 (568)
T PTZ00420 225 DDNYILSTGFSKNNMREMKLWDLKNTTSALVTMSIDNASAPLIPHYDESTGLIYLIGKGDGNCRYYQHSLGS 296 (568)
T ss_pred CCCEEEEEEcCCCCccEEEEEECCCCCCceEEEEecCCccceEEeeeCCCCCEEEEEECCCeEEEEEccCCc
Confidence 889998877664 799999984 45555443222 223333345568899999999999999997663
No 27
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.7e-31 Score=190.02 Aligned_cols=219 Identities=19% Similarity=0.319 Sum_probs=182.3
Q ss_pred CCCccceeeeCccccEEEEEECcCCCEEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeC
Q 026765 8 FKNLHSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASG 87 (233)
Q Consensus 8 ~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~ 87 (233)
.++...+.+..|.++|+++.|+-+|++.++++.|++||+|++... ....++.+|...|..++.+.++. .+++|+.
T Consensus 5 ~ptkr~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg----~liktYsghG~EVlD~~~s~Dns-kf~s~Gg 79 (307)
T KOG0316|consen 5 LPTKRLSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRG----ALIKTYSGHGHEVLDAALSSDNS-KFASCGG 79 (307)
T ss_pred CcchhceeecccccceEEEEEccCCCEEEEcCCCceEEeeccccc----ceeeeecCCCceeeecccccccc-ccccCCC
Confidence 344455688899999999999999999999999999999997542 23447889999999999887765 4689999
Q ss_pred CCeEEEEECCCCeeeeeeeec-CCeeEEEECCCCCeEEEEcCCCcEEEEEcCCCe--eeeee------------------
Q 026765 88 DKTVRLWDARSGKCSQQAELS-GENINITYKPDGTHIAVGNRDDELTILDVRKFK--PIHRR------------------ 146 (233)
Q Consensus 88 d~~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~--~~~~~------------------ 146 (233)
|+.+.+||+.+|+..+.+..+ +.+..+.|+.+...+++|+.|.++++||.|+.. |++.+
T Consensus 80 Dk~v~vwDV~TGkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~~heIv 159 (307)
T KOG0316|consen 80 DKAVQVWDVNTGKVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVAEHEIV 159 (307)
T ss_pred CceEEEEEcccCeeeeecccccceeeEEEecCcceEEEeccccceeEEEEcccCCCCccchhhhhcCceeEEEecccEEE
Confidence 999999999999988887765 455679999999999999999999999976421 11100
Q ss_pred ---------------------ecCceeeEEEECCCCCEEEEEeCCCeEEEEecCCceeeeEEeeecCcee--EEEECCCC
Q 026765 147 ---------------------KFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAHTAGCY--CIAIDPMG 203 (233)
Q Consensus 147 ---------------------~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~--~i~~~p~~ 203 (233)
.+++++++++++++++..++++-++++++.|-.+++.++.+.+|...-+ ..+++...
T Consensus 160 aGS~DGtvRtydiR~G~l~sDy~g~pit~vs~s~d~nc~La~~l~stlrLlDk~tGklL~sYkGhkn~eykldc~l~qsd 239 (307)
T KOG0316|consen 160 AGSVDGTVRTYDIRKGTLSSDYFGHPITSVSFSKDGNCSLASSLDSTLRLLDKETGKLLKSYKGHKNMEYKLDCCLNQSD 239 (307)
T ss_pred eeccCCcEEEEEeecceeehhhcCCcceeEEecCCCCEEEEeeccceeeecccchhHHHHHhcccccceeeeeeeecccc
Confidence 1235789999999999999999999999999999999999999987654 34577777
Q ss_pred CEEEEeeCCCcEEEEecCCcEEEEeeec
Q 026765 204 RYFAVGSADSLVSLWDISEMLCVRTFTK 231 (233)
Q Consensus 204 ~~las~s~dg~v~iwd~~~~~~i~~~~~ 231 (233)
.++++||+||.|.+||+.+...+..+..
T Consensus 240 thV~sgSEDG~Vy~wdLvd~~~~sk~~~ 267 (307)
T KOG0316|consen 240 THVFSGSEDGKVYFWDLVDETQISKLSV 267 (307)
T ss_pred eeEEeccCCceEEEEEeccceeeeeecc
Confidence 8999999999999999998887776654
No 28
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=3.4e-30 Score=190.15 Aligned_cols=217 Identities=23% Similarity=0.348 Sum_probs=179.0
Q ss_pred ceeeeCccccEEEEEECcCCCEEEEEeCCCCEEEEecccCCCCce-----------------------------------
Q 026765 13 SREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKV----------------------------------- 57 (233)
Q Consensus 13 ~~~~~~H~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~~~----------------------------------- 57 (233)
.+.|..-.+.|+++.|+++|..|++++.|.++++||.....+.+.
T Consensus 7 ak~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~~~~i~sStk~d~tIryLs 86 (311)
T KOG1446|consen 7 AKVFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHSNTVIHSSTKEDDTIRYLS 86 (311)
T ss_pred ccccccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCCceEEEccCCCCCceEEEE
Confidence 355666688999999999999999999999999999754321100
Q ss_pred -----eeEEEecCcCcEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeeeeecCCeeEEEECCCCCeEEEEcCCCcE
Q 026765 58 -----KDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRDDEL 132 (233)
Q Consensus 58 -----~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i 132 (233)
...-++||...|.+++.+|.+ ..++|++.|++|++||++..+|...+...+. ..++|+|+|-++|++.....|
T Consensus 87 l~dNkylRYF~GH~~~V~sL~~sP~~-d~FlS~S~D~tvrLWDlR~~~cqg~l~~~~~-pi~AfDp~GLifA~~~~~~~I 164 (311)
T KOG1446|consen 87 LHDNKYLRYFPGHKKRVNSLSVSPKD-DTFLSSSLDKTVRLWDLRVKKCQGLLNLSGR-PIAAFDPEGLIFALANGSELI 164 (311)
T ss_pred eecCceEEEcCCCCceEEEEEecCCC-CeEEecccCCeEEeeEecCCCCceEEecCCC-cceeECCCCcEEEEecCCCeE
Confidence 011367999999999999987 6778999999999999998888766655443 347899999999999988899
Q ss_pred EEEEcCCCee--eeeee----cCceeeEEEECCCCCEEEEEeCCCeEEEEecCCceeeeEEeeecCce---eEEEECCCC
Q 026765 133 TILDVRKFKP--IHRRK----FGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAHTAGC---YCIAIDPMG 203 (233)
Q Consensus 133 ~i~d~~~~~~--~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v---~~i~~~p~~ 203 (233)
++||+|+... ..... ...+.+.+.|+++|+++++++..+.+++.|.-++..+.++..+...- .+..|+|++
T Consensus 165 kLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ftPds 244 (311)
T KOG1446|consen 165 KLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPLSATFTPDS 244 (311)
T ss_pred EEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcceeEEECCCC
Confidence 9999997632 22222 23578999999999999999999999999999999888888776442 577899999
Q ss_pred CEEEEeeCCCcEEEEecCCcEEEEeeec
Q 026765 204 RYFAVGSADSLVSLWDISEMLCVRTFTK 231 (233)
Q Consensus 204 ~~las~s~dg~v~iwd~~~~~~i~~~~~ 231 (233)
+++.+|+.||+|.+|+++++..+..+.+
T Consensus 245 ~Fvl~gs~dg~i~vw~~~tg~~v~~~~~ 272 (311)
T KOG1446|consen 245 KFVLSGSDDGTIHVWNLETGKKVAVLRG 272 (311)
T ss_pred cEEEEecCCCcEEEEEcCCCcEeeEecC
Confidence 9999999999999999999999888765
No 29
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=3.4e-31 Score=194.18 Aligned_cols=214 Identities=21% Similarity=0.318 Sum_probs=184.5
Q ss_pred eeeCccccEEEEEECcCCCEEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCCeEEEE
Q 026765 15 EYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLW 94 (233)
Q Consensus 15 ~~~~H~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~iw 94 (233)
.+.+|+++|..+.|++|++.++|+|.|++|+.||+++.. .....++|.+.|+.+.-...+..++.||+.|+++++|
T Consensus 85 ~lkgHsgAVM~l~~~~d~s~i~S~gtDk~v~~wD~~tG~----~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~ 160 (338)
T KOG0265|consen 85 VLKGHSGAVMELHGMRDGSHILSCGTDKTVRGWDAETGK----RIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLW 160 (338)
T ss_pred eeccccceeEeeeeccCCCEEEEecCCceEEEEecccce----eeehhccccceeeecCccccCCeEEEecCCCceEEEE
Confidence 467999999999999999999999999999999998643 3346788999999998666677899999999999999
Q ss_pred ECCCCeeeeeeeecCCeeEEEECCCCCeEEEEcCCCcEEEEEcCCCeeeeeee-cCceeeEEEECCCCCEEEEEeCCCeE
Q 026765 95 DARSGKCSQQAELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRK-FGYEVNEIAWNMTGEMFFLTTGNGTV 173 (233)
Q Consensus 95 d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~v 173 (233)
|+++..+.+.++..-+..++.|..++..+.+|+-|+.|++||++.....+... +..+|+.+..+++|.++.+-+.|.++
T Consensus 161 D~R~k~~~~t~~~kyqltAv~f~d~s~qv~sggIdn~ikvWd~r~~d~~~~lsGh~DtIt~lsls~~gs~llsnsMd~tv 240 (338)
T KOG0265|consen 161 DIRKKEAIKTFENKYQLTAVGFKDTSDQVISGGIDNDIKVWDLRKNDGLYTLSGHADTITGLSLSRYGSFLLSNSMDNTV 240 (338)
T ss_pred eecccchhhccccceeEEEEEecccccceeeccccCceeeeccccCcceEEeecccCceeeEEeccCCCccccccccceE
Confidence 99998888877666677889999999999999999999999999877776554 45679999999999999999999999
Q ss_pred EEEecCCc----eeeeEEeeec--Cc--eeEEEECCCCCEEEEeeCCCcEEEEecCCcEEEEeeecC
Q 026765 174 EVLTYPSL----RPLDTVVAHT--AG--CYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKL 232 (233)
Q Consensus 174 ~~~~~~~~----~~~~~~~~~~--~~--v~~i~~~p~~~~las~s~dg~v~iwd~~~~~~i~~~~~~ 232 (233)
++||.+.. +++.-+.+|. .. ...++|+|+++.+.+|+.|+.+++||.....+++.++++
T Consensus 241 rvwd~rp~~p~~R~v~if~g~~hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~~~r~~lyklpGh 307 (338)
T KOG0265|consen 241 RVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSPNGTKITAGSADRFVYVWDTTSRRILYKLPGH 307 (338)
T ss_pred EEEEecccCCCCceEEEeecchhhhhhhcceeeccCCCCccccccccceEEEeecccccEEEEcCCc
Confidence 99998753 3455566543 33 346789999999999999999999999998899988775
No 30
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=1e-32 Score=209.42 Aligned_cols=208 Identities=19% Similarity=0.345 Sum_probs=177.3
Q ss_pred cccEEEEEECcCCCEEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCCeEEEEECCCC
Q 026765 20 KKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSG 99 (233)
Q Consensus 20 ~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~iwd~~~~ 99 (233)
+.+|..|.|.|+|..|++|+..|.+-+|+......+ ..+..|.++|+++.|++++ ..++||..+|.|++|+..-.
T Consensus 96 kc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~fnFE----tilQaHDs~Vr~m~ws~~g-~wmiSgD~gG~iKyWqpnmn 170 (464)
T KOG0284|consen 96 KCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSFNFE----TILQAHDSPVRTMKWSHNG-TWMISGDKGGMIKYWQPNMN 170 (464)
T ss_pred ccceeeEEEcCCCceeEeecccccEEEecCceeeHH----HHhhhhcccceeEEEccCC-CEEEEcCCCceEEecccchh
Confidence 568999999999999999999999999987432221 2356899999999999875 67889999999999987654
Q ss_pred eeeeeeeec-CCeeEEEECCCCCeEEEEcCCCcEEEEEcCCCeeeee-eecCceeeEEEECCCCCEEEEEeCCCeEEEEe
Q 026765 100 KCSQQAELS-GENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHR-RKFGYEVNEIAWNMTGEMFFLTTGNGTVEVLT 177 (233)
Q Consensus 100 ~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 177 (233)
........+ ..+.+++|+|++..+++++.|+.|+|||.+..+.... .-++-.+.+++|+|...++++++.|..|++||
T Consensus 171 nVk~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~kee~vL~GHgwdVksvdWHP~kgLiasgskDnlVKlWD 250 (464)
T KOG0284|consen 171 NVKIIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKEERVLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWD 250 (464)
T ss_pred hhHHhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCchhheeccCCCCcceeccCCccceeEEccCCceeEeec
Confidence 332222223 4577899999999999999999999999876654433 33567899999999999999999999999999
Q ss_pred cCCceeeeEEeeecCceeEEEECCCCCEEEEeeCCCcEEEEecCCcEEEEeeecC
Q 026765 178 YPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKL 232 (233)
Q Consensus 178 ~~~~~~~~~~~~~~~~v~~i~~~p~~~~las~s~dg~v~iwd~~~~~~i~~~~~~ 232 (233)
.++++++.++.+|...|..+.|+|++++|+++|.|..++++|++.++.+++|.++
T Consensus 251 prSg~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r~H 305 (464)
T KOG0284|consen 251 PRSGSCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTYRGH 305 (464)
T ss_pred CCCcchhhhhhhccceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHHhhcc
Confidence 9999999999999999999999999999999999999999999988877777654
No 31
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=2.8e-32 Score=207.09 Aligned_cols=202 Identities=26% Similarity=0.527 Sum_probs=172.3
Q ss_pred eeeC-ccccEEEEEECcCCCEEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCCeEEE
Q 026765 15 EYTG-HKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRL 93 (233)
Q Consensus 15 ~~~~-H~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~i 93 (233)
.+.+ |...|++++|+|....++|+|.|++|+|||...... ...+.||.--|.+++|+|.. .+++|||.|..|++
T Consensus 174 ~~~ahh~eaIRdlafSpnDskF~t~SdDg~ikiWdf~~~ke----e~vL~GHgwdVksvdWHP~k-gLiasgskDnlVKl 248 (464)
T KOG0284|consen 174 IIQAHHAEAIRDLAFSPNDSKFLTCSDDGTIKIWDFRMPKE----ERVLRGHGWDVKSVDWHPTK-GLIASGSKDNLVKL 248 (464)
T ss_pred HhhHhhhhhhheeccCCCCceeEEecCCCeEEEEeccCCch----hheeccCCCCcceeccCCcc-ceeEEccCCceeEe
Confidence 4444 559999999999999999999999999999864332 23578999999999999985 58899999999999
Q ss_pred EECCCCeeeeeeeec-CCeeEEEECCCCCeEEEEcCCCcEEEEEcCCCeeeeeee-cCceeeEEEECCCC-CEEEEEeCC
Q 026765 94 WDARSGKCSQQAELS-GENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRK-FGYEVNEIAWNMTG-EMFFLTTGN 170 (233)
Q Consensus 94 wd~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~ 170 (233)
||-+++.|..++..+ ..+..+.|.|++++|++++.|..++++|+++.+.+..++ +...+.++.|+|-. .++.+++.|
T Consensus 249 WDprSg~cl~tlh~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r~Hkkdv~~~~WhP~~~~lftsgg~D 328 (464)
T KOG0284|consen 249 WDPRSGSCLATLHGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTYRGHKKDVTSLTWHPLNESLFTSGGSD 328 (464)
T ss_pred ecCCCcchhhhhhhccceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHHhhcchhhheeeccccccccceeeccCC
Confidence 999999988766544 456789999999999999999999999999776665554 66789999999975 456778899
Q ss_pred CeEEEEecCCceeeeEE-eeecCceeEEEECCCCCEEEEeeCCCcEEEEecC
Q 026765 171 GTVEVLTYPSLRPLDTV-VAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDIS 221 (233)
Q Consensus 171 ~~v~~~~~~~~~~~~~~-~~~~~~v~~i~~~p~~~~las~s~dg~v~iwd~~ 221 (233)
|.+..|.....+++..+ .+|...|++++|+|-|.+|++|+.|.++++|...
T Consensus 329 gsvvh~~v~~~~p~~~i~~AHd~~iwsl~~hPlGhil~tgsnd~t~rfw~r~ 380 (464)
T KOG0284|consen 329 GSVVHWVVGLEEPLGEIPPAHDGEIWSLAYHPLGHILATGSNDRTVRFWTRN 380 (464)
T ss_pred CceEEEeccccccccCCCcccccceeeeeccccceeEeecCCCcceeeeccC
Confidence 99999998866666554 3799999999999999999999999999999864
No 32
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=100.00 E-value=5e-30 Score=185.49 Aligned_cols=211 Identities=20% Similarity=0.317 Sum_probs=181.9
Q ss_pred eeeCccccEEEEEECcCCCEEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCCeEEEE
Q 026765 15 EYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLW 94 (233)
Q Consensus 15 ~~~~H~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~iw 94 (233)
-+.||..+++.+.||.+|.+|+|++.|.++-||-.... +++ =++.||++.|-+++.+-+ ...+++|+.|.++++|
T Consensus 5 ~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nG--erl--Gty~GHtGavW~~Did~~-s~~liTGSAD~t~kLW 79 (327)
T KOG0643|consen 5 LLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNG--ERL--GTYDGHTGAVWCCDIDWD-SKHLITGSADQTAKLW 79 (327)
T ss_pred ccccCccccceEEecCCCcEEEEecCCCCceEEEecCC--cee--eeecCCCceEEEEEecCC-cceeeeccccceeEEE
Confidence 46799999999999999999999999999999976432 222 257899999999998865 5678899999999999
Q ss_pred ECCCCeeeeeeeecCCeeEEEECCCCCeEEEEcCC-----CcEEEEEcCC-------Ceeeeeee-cCceeeEEEECCCC
Q 026765 95 DARSGKCSQQAELSGENINITYKPDGTHIAVGNRD-----DELTILDVRK-------FKPIHRRK-FGYEVNEIAWNMTG 161 (233)
Q Consensus 95 d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d-----~~i~i~d~~~-------~~~~~~~~-~~~~~~~~~~~~~~ 161 (233)
|+.+|++...+.....+..+.|+++|++++....+ +.+.++|++. .++...+. ....++.+.|.|-+
T Consensus 80 Dv~tGk~la~~k~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~ 159 (327)
T KOG0643|consen 80 DVETGKQLATWKTNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLG 159 (327)
T ss_pred EcCCCcEEEEeecCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhcccCceEEecCCccceeeeeecccC
Confidence 99999999999988889999999999998877654 4688999873 33344333 23568899999999
Q ss_pred CEEEEEeCCCeEEEEecCCc-eeeeEEeeecCceeEEEECCCCCEEEEeeCCCcEEEEecCCcEEEEeee
Q 026765 162 EMFFLTTGNGTVEVLTYPSL-RPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFT 230 (233)
Q Consensus 162 ~~~~~~~~~~~v~~~~~~~~-~~~~~~~~~~~~v~~i~~~p~~~~las~s~dg~v~iwd~~~~~~i~~~~ 230 (233)
++++++.++|.+.+||.+++ +.+.....|...|+.+.++|+..++++||.|.+.++||+.+.+++++|.
T Consensus 160 ~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~ 229 (327)
T KOG0643|consen 160 ETIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTYT 229 (327)
T ss_pred CEEEEecCCCcEEEEEcccCceeeechhhhccccccccccCCcceEEecccCccceeeeccceeeEEEee
Confidence 99999999999999999986 4555567799999999999999999999999999999999999999986
No 33
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=100.00 E-value=1.4e-29 Score=194.52 Aligned_cols=212 Identities=28% Similarity=0.478 Sum_probs=181.5
Q ss_pred eeeeCccccEEEEEECcCCCEEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCCeEEE
Q 026765 14 REYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRL 93 (233)
Q Consensus 14 ~~~~~H~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~i 93 (233)
+++.+|.++|++++|+|++++|++++.|+.|++|++.... ....+.+|...+..+.|.|++ ..+++++.|+.|++
T Consensus 3 ~~~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~----~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~~~~i~i 77 (289)
T cd00200 3 RTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGE----LLRTLKGHTGPVRDVAASADG-TYLASGSSDKTIRL 77 (289)
T ss_pred hHhcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCC----cEEEEecCCcceeEEEECCCC-CEEEEEcCCCeEEE
Confidence 5677999999999999999999999999999999987532 223567888999999999975 57889999999999
Q ss_pred EECCCCeeeeeeeec-CCeeEEEECCCCCeEEEEcCCCcEEEEEcCCCeeeeeee-cCceeeEEEECCCCCEEEEEeCCC
Q 026765 94 WDARSGKCSQQAELS-GENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRK-FGYEVNEIAWNMTGEMFFLTTGNG 171 (233)
Q Consensus 94 wd~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 171 (233)
||+..++....+..+ ..+.++.|+|++..+++++.++.+.+||+++.+...... +...+.++.|+++++++++++.++
T Consensus 78 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~ 157 (289)
T cd00200 78 WDLETGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDG 157 (289)
T ss_pred EEcCcccceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEECCCcEEEEEeccCCCcEEEEEEcCcCCEEEEEcCCC
Confidence 999887655555443 356789999998888888889999999998777666554 445699999999988888888899
Q ss_pred eEEEEecCCceeeeEEeeecCceeEEEECCCCCEEEEeeCCCcEEEEecCCcEEEEeee
Q 026765 172 TVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFT 230 (233)
Q Consensus 172 ~v~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~las~s~dg~v~iwd~~~~~~i~~~~ 230 (233)
.+.+|+.+..+.+..+..|...+.+++|+|+++.+++++.|+.|++||+..+..++++.
T Consensus 158 ~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~ 216 (289)
T cd00200 158 TIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLGTLR 216 (289)
T ss_pred cEEEEEccccccceeEecCccccceEEECCCcCEEEEecCCCcEEEEECCCCceecchh
Confidence 99999999888888888898899999999999999999999999999999888887774
No 34
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=4.7e-31 Score=215.82 Aligned_cols=216 Identities=20% Similarity=0.325 Sum_probs=178.4
Q ss_pred eeee-CccccEEEEEECcCCCEEEEEeCCCCEEEEecccC----------------------------CC----C-----
Q 026765 14 REYT-GHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPH----------------------------GH----G----- 55 (233)
Q Consensus 14 ~~~~-~H~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~----------------------------~~----~----- 55 (233)
+++. +|.+.|+++.|++||++|||||.|+.||||.+... .. .
T Consensus 260 Qe~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s~~ 339 (712)
T KOG0283|consen 260 QEISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTSSS 339 (712)
T ss_pred eccccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCcccccccccccccccc
Confidence 3455 89999999999999999999999999999987430 00 0
Q ss_pred -------c------------eeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeeeeecCCeeEEEE
Q 026765 56 -------K------------VKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINITY 116 (233)
Q Consensus 56 -------~------------~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~ 116 (233)
. ....++.||.+.|.++.|+.+ ++|+|++.|++||+|++....|...+.+..-+.|++|
T Consensus 340 ~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn--~fLLSSSMDKTVRLWh~~~~~CL~~F~HndfVTcVaF 417 (712)
T KOG0283|consen 340 RKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKN--NFLLSSSMDKTVRLWHPGRKECLKVFSHNDFVTCVAF 417 (712)
T ss_pred ccccCCccccCCCccccccccchhhhhccchhheecccccC--CeeEeccccccEEeecCCCcceeeEEecCCeeEEEEe
Confidence 0 000146799999999999975 5888999999999999999999999999999999999
Q ss_pred CC-CCCeEEEEcCCCcEEEEEcCCCeeeeeeecCceeeEEEECCCCCEEEEEeCCCeEEEEecCCceeeeEEee--e---
Q 026765 117 KP-DGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVA--H--- 190 (233)
Q Consensus 117 ~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~--~--- 190 (233)
+| |.+|+++|+-|++++||++...+.+.=.....-|+.+++.|+|++.++|+-+|.+++|+....+....... |
T Consensus 418 nPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~Dl~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~K 497 (712)
T KOG0283|consen 418 NPVDDRYFISGSLDGKVRLWSISDKKVVDWNDLRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKK 497 (712)
T ss_pred cccCCCcEeecccccceEEeecCcCeeEeehhhhhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeeccCc
Confidence 99 77899999999999999997766654444456799999999999999999999999999987766554432 2
Q ss_pred ---cCceeEEEECCCCC-EEEEeeCCCcEEEEecCCcEEEEeeec
Q 026765 191 ---TAGCYCIAIDPMGR-YFAVGSADSLVSLWDISEMLCVRTFTK 231 (233)
Q Consensus 191 ---~~~v~~i~~~p~~~-~las~s~dg~v~iwd~~~~~~i~~~~~ 231 (233)
...|+.+.|.|... .++..++|..|||||.++...+..|.+
T Consensus 498 k~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG 542 (712)
T KOG0283|consen 498 KKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKG 542 (712)
T ss_pred cccCceeeeeEecCCCCCeEEEecCCCceEEEeccchhhhhhhcc
Confidence 23799999998554 477788999999999988777777664
No 35
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.98 E-value=3.7e-30 Score=208.54 Aligned_cols=212 Identities=18% Similarity=0.319 Sum_probs=180.9
Q ss_pred eeeeCccccEEEEEECcCCCEEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCCeEEE
Q 026765 14 REYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRL 93 (233)
Q Consensus 14 ~~~~~H~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~i 93 (233)
-...||...+++++++|||+++|||+.||.|||||... ..+...+..|+..|+.+.|+..+ +.++|++-||+|+.
T Consensus 344 lKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~S----gfC~vTFteHts~Vt~v~f~~~g-~~llssSLDGtVRA 418 (893)
T KOG0291|consen 344 LKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQS----GFCFVTFTEHTSGVTAVQFTARG-NVLLSSSLDGTVRA 418 (893)
T ss_pred eeccccccceeeEEECCCCcEEEeccCCCcEEEEeccC----ceEEEEeccCCCceEEEEEEecC-CEEEEeecCCeEEe
Confidence 34469999999999999999999999999999999753 45677899999999999999874 67889999999999
Q ss_pred EECCCCeeeeeeeecCCe--eEEEECCCCCeEEEEcCCC-cEEEEEcCCCeeeeeee-cCceeeEEEECCCCCEEEEEeC
Q 026765 94 WDARSGKCSQQAELSGEN--INITYKPDGTHIAVGNRDD-ELTILDVRKFKPIHRRK-FGYEVNEIAWNMTGEMFFLTTG 169 (233)
Q Consensus 94 wd~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~d~-~i~i~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 169 (233)
||+...++-+++..+.+. .+++..|.|..+++|+.|. .|.+|++.+++.+..+. +..+|.+++|+|.+..+++++-
T Consensus 419 wDlkRYrNfRTft~P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllDiLsGHEgPVs~l~f~~~~~~LaS~SW 498 (893)
T KOG0291|consen 419 WDLKRYRNFRTFTSPEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLDILSGHEGPVSGLSFSPDGSLLASGSW 498 (893)
T ss_pred eeecccceeeeecCCCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeeehhcCCCCcceeeEEccccCeEEeccc
Confidence 999988887777665543 4788999999999999886 49999999998876544 5678999999999999999999
Q ss_pred CCeEEEEecCCceeeeEEeeecCceeEEEECCCCCEEEEeeCCCcEEEEecCCcEEEEeee
Q 026765 170 NGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFT 230 (233)
Q Consensus 170 ~~~v~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~las~s~dg~v~iwd~~~~~~i~~~~ 230 (233)
|.+|++|+.-.......-..+...+..++|.|+|+.||.+.-||.|.+||.+++..+.+++
T Consensus 499 DkTVRiW~if~s~~~vEtl~i~sdvl~vsfrPdG~elaVaTldgqItf~d~~~~~q~~~Id 559 (893)
T KOG0291|consen 499 DKTVRIWDIFSSSGTVETLEIRSDVLAVSFRPDGKELAVATLDGQITFFDIKEAVQVGSID 559 (893)
T ss_pred cceEEEEEeeccCceeeeEeeccceeEEEEcCCCCeEEEEEecceEEEEEhhhceeecccc
Confidence 9999999985543333333467789999999999999999999999999999887665543
No 36
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.98 E-value=1.1e-29 Score=221.33 Aligned_cols=215 Identities=16% Similarity=0.286 Sum_probs=174.9
Q ss_pred eeCccccEEEEEECcCCCEEEEEeCCCCEEEEecccCC----CCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCCeE
Q 026765 16 YTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHG----HGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTV 91 (233)
Q Consensus 16 ~~~H~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~----~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i 91 (233)
+.+|.+.|++++|+|+|++||||+.|++|+||+..... ........+. +...+.+++|++....+|++++.|+.|
T Consensus 479 ~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~-~~~~v~~l~~~~~~~~~las~~~Dg~v 557 (793)
T PLN00181 479 LLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELA-SRSKLSGICWNSYIKSQVASSNFEGVV 557 (793)
T ss_pred ccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEEec-ccCceeeEEeccCCCCEEEEEeCCCeE
Confidence 34599999999999999999999999999999975311 0011112233 346789999998767789999999999
Q ss_pred EEEECCCCeeeeeeee-cCCeeEEEECC-CCCeEEEEcCCCcEEEEEcCCCeeeeeeecCceeeEEEEC-CCCCEEEEEe
Q 026765 92 RLWDARSGKCSQQAEL-SGENINITYKP-DGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWN-MTGEMFFLTT 168 (233)
Q Consensus 92 ~iwd~~~~~~~~~~~~-~~~~~~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 168 (233)
++||+.+++....+.. ...+.+++|+| ++.+|++|+.|+.+++||+++...+........+.++.|+ ++++.+++++
T Consensus 558 ~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~~~~~~~~v~~v~~~~~~g~~latgs 637 (793)
T PLN00181 558 QVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIGTIKTKANICCVQFPSESGRSLAFGS 637 (793)
T ss_pred EEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEEEEecCCCeEEEEEeCCCCCEEEEEe
Confidence 9999998877665543 35677899996 7889999999999999999987777666655678888884 5799999999
Q ss_pred CCCeEEEEecCCce-eeeEEeeecCceeEEEECCCCCEEEEeeCCCcEEEEecCC------cEEEEeeecC
Q 026765 169 GNGTVEVLTYPSLR-PLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISE------MLCVRTFTKL 232 (233)
Q Consensus 169 ~~~~v~~~~~~~~~-~~~~~~~~~~~v~~i~~~p~~~~las~s~dg~v~iwd~~~------~~~i~~~~~~ 232 (233)
.||.+++||.+..+ ++..+.+|...|.+++|. ++.+|++++.|++|+|||+.. ..++++|.++
T Consensus 638 ~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh 707 (793)
T PLN00181 638 ADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMGH 707 (793)
T ss_pred CCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCCEEEEEECCCEEEEEeCCCCccccCCcceEEEcCC
Confidence 99999999997654 566778999999999997 678999999999999999974 3567777654
No 37
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.98 E-value=6.8e-31 Score=193.81 Aligned_cols=218 Identities=22% Similarity=0.397 Sum_probs=181.4
Q ss_pred eeeeCccccEEEEEECcCCCEEEEEeCCCCEEEEeccc-------------CCCCc-eeeEEEecCcCcEEEEEEcCCCC
Q 026765 14 REYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEP-------------HGHGK-VKDIELRGHADSVDQLCWDPKHA 79 (233)
Q Consensus 14 ~~~~~H~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~-------------~~~~~-~~~~~~~~h~~~v~~~~~~~~~~ 79 (233)
..++.|+.++++.+|+|||.++||||.|.+|||.|++. ..+.. .....+-.|.+.|+++.|+|..
T Consensus 106 ~ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHPre- 184 (430)
T KOG0640|consen 106 KYLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHPRE- 184 (430)
T ss_pred EEEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecchh-
Confidence 46789999999999999999999999999999999861 00111 1223466899999999999985
Q ss_pred CEEEEEeCCCeEEEEECCCCeeee---eeeecCCeeEEEECCCCCeEEEEcCCCcEEEEEcCCCeeeee----eecCcee
Q 026765 80 DLIATASGDKTVRLWDARSGKCSQ---QAELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHR----RKFGYEV 152 (233)
Q Consensus 80 ~~l~sg~~d~~i~iwd~~~~~~~~---~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~----~~~~~~~ 152 (233)
.+|+||+.|++|+++|.......+ .+.-..++.++.|+|.|.++++|.....+++||+.+.+..-. .++...+
T Consensus 185 ~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSfHPsGefllvgTdHp~~rlYdv~T~QcfvsanPd~qht~ai 264 (430)
T KOG0640|consen 185 TILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISFHPSGEFLLVGTDHPTLRLYDVNTYQCFVSANPDDQHTGAI 264 (430)
T ss_pred heEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEeecCCCceEEEecCCCceeEEeccceeEeeecCcccccccce
Confidence 688999999999999987653222 233345677899999999999999999999999988765432 2345579
Q ss_pred eEEEECCCCCEEEEEeCCCeEEEEecCCceeeeEEe-eecC-ceeEEEECCCCCEEEEeeCCCcEEEEecCCcEEEEeee
Q 026765 153 NEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVV-AHTA-GCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFT 230 (233)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~-~~~~-~v~~i~~~p~~~~las~s~dg~v~iwd~~~~~~i~~~~ 230 (233)
+++.+++++++.++++.||.|++||--+.+++.++. .|++ .|-+..|..+++|+.+.+.|..|++|.+.++.++++|.
T Consensus 265 ~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l~~Yt 344 (430)
T KOG0640|consen 265 TQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGRMLKEYT 344 (430)
T ss_pred eEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeeecCCceEEEEe
Confidence 999999999999999999999999988888888765 5654 57788899999999999999999999999999999997
Q ss_pred cC
Q 026765 231 KL 232 (233)
Q Consensus 231 ~~ 232 (233)
+.
T Consensus 345 GA 346 (430)
T KOG0640|consen 345 GA 346 (430)
T ss_pred cC
Confidence 64
No 38
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.98 E-value=8.9e-31 Score=215.43 Aligned_cols=214 Identities=21% Similarity=0.324 Sum_probs=181.6
Q ss_pred cceeeeCccccEEEEEECcCCCEEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCCeE
Q 026765 12 HSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTV 91 (233)
Q Consensus 12 ~~~~~~~H~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i 91 (233)
.+..|.+|.++|+.++|+|++.+++|||.|-+||||+...+. +...+.||-+.|+.+.||+.-+ .|+|+|.|.+|
T Consensus 43 li~rFdeHdGpVRgv~FH~~qplFVSGGDDykIkVWnYk~rr----clftL~GHlDYVRt~~FHheyP-WIlSASDDQTI 117 (1202)
T KOG0292|consen 43 LIDRFDEHDGPVRGVDFHPTQPLFVSGGDDYKIKVWNYKTRR----CLFTLLGHLDYVRTVFFHHEYP-WILSASDDQTI 117 (1202)
T ss_pred HHhhhhccCCccceeeecCCCCeEEecCCccEEEEEecccce----ehhhhccccceeEEeeccCCCc-eEEEccCCCeE
Confidence 345688999999999999999999999999999999987532 4457889999999999999876 67799999999
Q ss_pred EEEECCCCeeeeeeeecC-CeeEEEECCCCCeEEEEcCCCcEEEEEcCCCeee---------------------------
Q 026765 92 RLWDARSGKCSQQAELSG-ENINITYKPDGTHIAVGNRDDELTILDVRKFKPI--------------------------- 143 (233)
Q Consensus 92 ~iwd~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~--------------------------- 143 (233)
+|||..+++|+..+..+. -+.|.+|+|....+++++-|.+|++||+...+.-
T Consensus 118 rIWNwqsr~~iavltGHnHYVMcAqFhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaV 197 (1202)
T KOG0292|consen 118 RIWNWQSRKCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAV 197 (1202)
T ss_pred EEEeccCCceEEEEecCceEEEeeccCCccceEEEecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCee
Confidence 999999999988877654 4678899999999999999999999997422100
Q ss_pred -eeee--cCceeeEEEECCCCCEEEEEeCCCeEEEEecCCce--eeeEEeeecCceeEEEECCCCCEEEEeeCCCcEEEE
Q 026765 144 -HRRK--FGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLR--PLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLW 218 (233)
Q Consensus 144 -~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~~~~~~~~~~v~~i~~~p~~~~las~s~dg~v~iw 218 (233)
.... +...++-++|+|+-..+++|+.|..|++|.....+ ...+..+|...|.++-|+|...++.+.|+|++|+||
T Consensus 198 VK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetKaWEvDtcrgH~nnVssvlfhp~q~lIlSnsEDksirVw 277 (1202)
T KOG0292|consen 198 VKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTCRGHYNNVSSVLFHPHQDLILSNSEDKSIRVW 277 (1202)
T ss_pred eeeeecccccccceEEecCCcceEEecCCcceeeEEEeccccceeehhhhcccCCcceEEecCccceeEecCCCccEEEE
Confidence 0000 12347778999999999999999999999875433 345667999999999999999999999999999999
Q ss_pred ecCCcEEEEeee
Q 026765 219 DISEMLCVRTFT 230 (233)
Q Consensus 219 d~~~~~~i~~~~ 230 (233)
|+....++++|.
T Consensus 278 Dm~kRt~v~tfr 289 (1202)
T KOG0292|consen 278 DMTKRTSVQTFR 289 (1202)
T ss_pred ecccccceeeee
Confidence 999999999984
No 39
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=99.97 E-value=6.2e-30 Score=197.44 Aligned_cols=206 Identities=29% Similarity=0.494 Sum_probs=180.1
Q ss_pred cccEEEEEECcCCCEEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCCeEEEEECCCC
Q 026765 20 KKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSG 99 (233)
Q Consensus 20 ~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~iwd~~~~ 99 (233)
+..|++|+|+.+|+.||+|+.||.+|+|+.... ....+..|+.+|.++.|+..+ .+|++++-|+++.+||..++
T Consensus 235 nkdVT~L~Wn~~G~~LatG~~~G~~riw~~~G~-----l~~tl~~HkgPI~slKWnk~G-~yilS~~vD~ttilwd~~~g 308 (524)
T KOG0273|consen 235 NKDVTSLDWNNDGTLLATGSEDGEARIWNKDGN-----LISTLGQHKGPIFSLKWNKKG-TYILSGGVDGTTILWDAHTG 308 (524)
T ss_pred cCCcceEEecCCCCeEEEeecCcEEEEEecCch-----hhhhhhccCCceEEEEEcCCC-CEEEeccCCccEEEEeccCc
Confidence 467999999999999999999999999997531 122567899999999999875 57789999999999999999
Q ss_pred eeeeeeeecCCe-eEEEECCCCCeEEEEcCCCcEEEEEcCCCeeeeeee-cCceeeEEEECCCCCEEEEEeCCCeEEEEe
Q 026765 100 KCSQQAELSGEN-INITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRK-FGYEVNEIAWNMTGEMFFLTTGNGTVEVLT 177 (233)
Q Consensus 100 ~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 177 (233)
...+.+.++..+ ..+.|..+ ..+++++.|+.|+++.+....|+.... +..+|..+.|+|.+.++++++.|+++++|.
T Consensus 309 ~~~q~f~~~s~~~lDVdW~~~-~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs 387 (524)
T KOG0273|consen 309 TVKQQFEFHSAPALDVDWQSN-DEFATSSTDGCIHVCKVGEDRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWS 387 (524)
T ss_pred eEEEeeeeccCCccceEEecC-ceEeecCCCceEEEEEecCCCcceeeecccCceEEEEECCCCceEEEecCCCeeEeee
Confidence 999988887665 66888644 578889999999999998777776544 556899999999999999999999999999
Q ss_pred cCCceeeeEEeeecCceeEEEECCCCC---------EEEEeeCCCcEEEEecCCcEEEEeeecC
Q 026765 178 YPSLRPLDTVVAHTAGCYCIAIDPMGR---------YFAVGSADSLVSLWDISEMLCVRTFTKL 232 (233)
Q Consensus 178 ~~~~~~~~~~~~~~~~v~~i~~~p~~~---------~las~s~dg~v~iwd~~~~~~i~~~~~~ 232 (233)
......+..+.+|...|+.+.|+|.|. .|++++.|++|++||+.++.|+.+|-++
T Consensus 388 ~~~~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH 451 (524)
T KOG0273|consen 388 MGQSNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKH 451 (524)
T ss_pred cCCCcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccC
Confidence 888888889999999999999999773 7999999999999999999999998654
No 40
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=99.97 E-value=3e-31 Score=205.16 Aligned_cols=202 Identities=24% Similarity=0.446 Sum_probs=167.9
Q ss_pred cceeeeCccccEEEEEECcCCCEEEEEeCCCCEEEEecccCCCCceeeEEEecCc-CcEEEEEEcCCCCCEEEEEeCCCe
Q 026765 12 HSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHA-DSVDQLCWDPKHADLIATASGDKT 90 (233)
Q Consensus 12 ~~~~~~~H~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~-~~v~~~~~~~~~~~~l~sg~~d~~ 90 (233)
..++|.||+.+|.+++|+++|..++|+|.|+.+|+||++++. .+ .+.|. ..++++.|+|++++++++|+.|+.
T Consensus 250 ~lrtf~gH~k~Vrd~~~s~~g~~fLS~sfD~~lKlwDtETG~--~~----~~f~~~~~~~cvkf~pd~~n~fl~G~sd~k 323 (503)
T KOG0282|consen 250 CLRTFKGHRKPVRDASFNNCGTSFLSASFDRFLKLWDTETGQ--VL----SRFHLDKVPTCVKFHPDNQNIFLVGGSDKK 323 (503)
T ss_pred eehhhhcchhhhhhhhccccCCeeeeeecceeeeeeccccce--EE----EEEecCCCceeeecCCCCCcEEEEecCCCc
Confidence 457899999999999999999999999999999999998632 11 12243 467899999999899999999999
Q ss_pred EEEEECCCCeeeeeeeec-CCeeEEEECCCCCeEEEEcCCCcEEEEEcCCCeeeeeee----------------------
Q 026765 91 VRLWDARSGKCSQQAELS-GENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRK---------------------- 147 (233)
Q Consensus 91 i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~---------------------- 147 (233)
|+.||+++++.+++...+ +.+..+.|-++++++++.+.|+.++||+.+...++....
T Consensus 324 i~~wDiRs~kvvqeYd~hLg~i~~i~F~~~g~rFissSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~~P~~~~~~aQ 403 (503)
T KOG0282|consen 324 IRQWDIRSGKVVQEYDRHLGAILDITFVDEGRRFISSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTLHPNGKWFAAQ 403 (503)
T ss_pred EEEEeccchHHHHHHHhhhhheeeeEEccCCceEeeeccCccEEEEEcCCCccchhhcchhhccCcceecCCCCCeehhh
Confidence 999999999877665444 456679999999999999999999999865322111100
Q ss_pred ----------------c-------Cc----eeeEEEECCCCCEEEEEeCCCeEEEEecCCceeeeEEeeecCceeEEEEC
Q 026765 148 ----------------F-------GY----EVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAHTAGCYCIAID 200 (233)
Q Consensus 148 ----------------~-------~~----~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~i~~~ 200 (233)
. ++ -...+.|+|||.++++|+++|.+.+||+++-+.+..+.+|.+.+..+.|+
T Consensus 404 s~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl~~~lkah~~~ci~v~wH 483 (503)
T KOG0282|consen 404 SMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTKLVSKLKAHDQPCIGVDWH 483 (503)
T ss_pred ccCceEEEEecccccccCHhhhhcceeccCceeeEEEcCCCCeEEeecCCccEEEeechhhhhhhccccCCcceEEEEec
Confidence 0 00 12357899999999999999999999999999999999999999999999
Q ss_pred CCCC-EEEEeeCCCcEEEEe
Q 026765 201 PMGR-YFAVGSADSLVSLWD 219 (233)
Q Consensus 201 p~~~-~las~s~dg~v~iwd 219 (233)
|... .+|+|+-||.|++||
T Consensus 484 P~e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 484 PVEPSKVATCGWDGLIKIWD 503 (503)
T ss_pred CCCcceeEecccCceeEecC
Confidence 9764 699999999999996
No 41
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.97 E-value=8.9e-32 Score=201.22 Aligned_cols=216 Identities=23% Similarity=0.368 Sum_probs=171.7
Q ss_pred CCCCCCCCccceee---eCccccEEEEEECcCCCEEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCC
Q 026765 3 ESSIPFKNLHSREY---TGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHA 79 (233)
Q Consensus 3 ~~~~~~~~~~~~~~---~~H~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~ 79 (233)
|++++........+ +.-...|+|+++ |...++||..|++|+|||.+... +...+.||++.|.|+.|..
T Consensus 177 dsNWr~Gr~~~~rinc~Se~skgVYClQY--DD~kiVSGlrDnTikiWD~n~~~----c~~~L~GHtGSVLCLqyd~--- 247 (499)
T KOG0281|consen 177 ESNWRCGRHLLQRINCRSENSKGVYCLQY--DDEKIVSGLRDNTIKIWDKNSLE----CLKILTGHTGSVLCLQYDE--- 247 (499)
T ss_pred hcchhccceeeeeecCCcccCCceEEEEe--cchhhhcccccCceEEeccccHH----HHHhhhcCCCcEEeeeccc---
Confidence 34444444433333 234678999996 57889999999999999986422 3335789999999999953
Q ss_pred CEEEEEeCCCeEEEEECCCCeeeeeeeecC-CeeEEEECCCCCeEEEEcCCCcEEEEEcCCCeeeeee--e--cCceeeE
Q 026765 80 DLIATASGDKTVRLWDARSGKCSQQAELSG-ENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRR--K--FGYEVNE 154 (233)
Q Consensus 80 ~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~--~--~~~~~~~ 154 (233)
++|+||+.|.+|+|||.+++++......+- .+.-+.|+. .++++++.|.++.+||+.....+... . +...++.
T Consensus 248 rviisGSSDsTvrvWDv~tge~l~tlihHceaVLhlrf~n--g~mvtcSkDrsiaVWdm~sps~it~rrVLvGHrAaVNv 325 (499)
T KOG0281|consen 248 RVIVSGSSDSTVRVWDVNTGEPLNTLIHHCEAVLHLRFSN--GYMVTCSKDRSIAVWDMASPTDITLRRVLVGHRAAVNV 325 (499)
T ss_pred eEEEecCCCceEEEEeccCCchhhHHhhhcceeEEEEEeC--CEEEEecCCceeEEEeccCchHHHHHHHHhhhhhheee
Confidence 589999999999999999999877665543 344567753 58999999999999999865533211 1 2235666
Q ss_pred EEECCCCCEEEEEeCCCeEEEEecCCceeeeEEeeecCceeEEEECCCCCEEEEeeCCCcEEEEecCCcEEEEeeecCC
Q 026765 155 IAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKLE 233 (233)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~las~s~dg~v~iwd~~~~~~i~~~~~~~ 233 (233)
+.| +.++++++++|.++++|+..+.+.+.++.+|..+|.|+.+ .++++++||.|.+|++||+..|.|++.+++++
T Consensus 326 Vdf--d~kyIVsASgDRTikvW~~st~efvRtl~gHkRGIAClQY--r~rlvVSGSSDntIRlwdi~~G~cLRvLeGHE 400 (499)
T KOG0281|consen 326 VDF--DDKYIVSASGDRTIKVWSTSTCEFVRTLNGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGACLRVLEGHE 400 (499)
T ss_pred ecc--ccceEEEecCCceEEEEeccceeeehhhhcccccceehhc--cCeEEEecCCCceEEEEeccccHHHHHHhchH
Confidence 665 6789999999999999999999999999999999999887 57899999999999999999999999888764
No 42
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=99.97 E-value=4.6e-29 Score=195.05 Aligned_cols=204 Identities=22% Similarity=0.388 Sum_probs=163.9
Q ss_pred CccccEEEEEECcCCCEEEEEeCCCCEEEEecccCCCCc---------------------ee------------------
Q 026765 18 GHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGK---------------------VK------------------ 58 (233)
Q Consensus 18 ~H~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~~---------------------~~------------------ 58 (233)
+|++.|++|+|+||+++++|+|.|+++||||+....... +.
T Consensus 233 aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~ 312 (603)
T KOG0318|consen 233 AHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSV 312 (603)
T ss_pred CccccEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCCh
Confidence 899999999999999999999999999999986432100 00
Q ss_pred eEEEecCcCcEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeee-------------------------------eee--
Q 026765 59 DIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCS-------------------------------QQA-- 105 (233)
Q Consensus 59 ~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~-------------------------------~~~-- 105 (233)
...+.||...|+++..+|++ ..|+||+.||.|.-||+..+..- +..
T Consensus 313 ~~~i~GHnK~ITaLtv~~d~-~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~ 391 (603)
T KOG0318|consen 313 LKVISGHNKSITALTVSPDG-KTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISL 391 (603)
T ss_pred hheecccccceeEEEEcCCC-CEEEeeccCceEEEEecCCccccccccccccceEEEEeecCCCcEEEEecCCeEEEEec
Confidence 01356999999999999987 78889999999999998644210 000
Q ss_pred -----------eec----------C----------------------------CeeEEEECCCCCeEEEEcCCCcEEEEE
Q 026765 106 -----------ELS----------G----------------------------ENINITYKPDGTHIAVGNRDDELTILD 136 (233)
Q Consensus 106 -----------~~~----------~----------------------------~~~~~~~~~~~~~l~~~~~d~~i~i~d 136 (233)
.+. . ...+++++|++..+++|+.|+++++|.
T Consensus 392 ~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvys 471 (603)
T KOG0318|consen 392 KDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVAVGGQDGKVHVYS 471 (603)
T ss_pred ccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcCCCCEEEEecccceEEEEE
Confidence 000 0 012467889999999999999999999
Q ss_pred cCCCeee---eeeecCceeeEEEECCCCCEEEEEeCCCeEEEEecCCceeeeEEee-ecCceeEEEECCCCCEEEEeeCC
Q 026765 137 VRKFKPI---HRRKFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVA-HTAGCYCIAIDPMGRYFAVGSAD 212 (233)
Q Consensus 137 ~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~-~~~~v~~i~~~p~~~~las~s~d 212 (233)
+...... ....+..+++.++++|++.+++++...+.+.+|+..+.+....... |...|+|++|+|++.++|+||-|
T Consensus 472 l~g~~l~ee~~~~~h~a~iT~vaySpd~~yla~~Da~rkvv~yd~~s~~~~~~~w~FHtakI~~~aWsP~n~~vATGSlD 551 (603)
T KOG0318|consen 472 LSGDELKEEAKLLEHRAAITDVAYSPDGAYLAAGDASRKVVLYDVASREVKTNRWAFHTAKINCVAWSPNNKLVATGSLD 551 (603)
T ss_pred ecCCcccceeeeecccCCceEEEECCCCcEEEEeccCCcEEEEEcccCceecceeeeeeeeEEEEEeCCCceEEEecccc
Confidence 9765433 3344567899999999999999999999999999988776444444 99999999999999999999999
Q ss_pred CcEEEEecCC
Q 026765 213 SLVSLWDISE 222 (233)
Q Consensus 213 g~v~iwd~~~ 222 (233)
..|.||+++.
T Consensus 552 t~Viiysv~k 561 (603)
T KOG0318|consen 552 TNVIIYSVKK 561 (603)
T ss_pred ceEEEEEccC
Confidence 9999999974
No 43
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=8e-30 Score=208.67 Aligned_cols=210 Identities=19% Similarity=0.336 Sum_probs=175.9
Q ss_pred CCCCccceeeeCccccEEEEEECcCCCEEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEe
Q 026765 7 PFKNLHSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATAS 86 (233)
Q Consensus 7 ~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~ 86 (233)
.|...+..+|.||.+.|..|.|+. +.+|+|+|.|+|||+|++... .++....|.+.|+|++|+|.+.++++||+
T Consensus 356 ~f~ekP~~ef~GHt~DILDlSWSK-n~fLLSSSMDKTVRLWh~~~~-----~CL~~F~HndfVTcVaFnPvDDryFiSGS 429 (712)
T KOG0283|consen 356 VFSEKPFCEFKGHTADILDLSWSK-NNFLLSSSMDKTVRLWHPGRK-----ECLKVFSHNDFVTCVAFNPVDDRYFISGS 429 (712)
T ss_pred cccccchhhhhccchhheeccccc-CCeeEeccccccEEeecCCCc-----ceeeEEecCCeeEEEEecccCCCcEeecc
Confidence 366677788999999999999985 678999999999999998743 23345579999999999999999999999
Q ss_pred CCCeEEEEECCCCeeeeeeeecCCeeEEEECCCCCeEEEEcCCCcEEEEEcCCCeeeeeeec---------CceeeEEEE
Q 026765 87 GDKTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKF---------GYEVNEIAW 157 (233)
Q Consensus 87 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~---------~~~~~~~~~ 157 (233)
-|+.||||++...+..........+.+++|.|||++.++|+.+|.+++|+.+..+....... +..|+.+.+
T Consensus 430 LD~KvRiWsI~d~~Vv~W~Dl~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~~rITG~Q~ 509 (712)
T KOG0283|consen 430 LDGKVRLWSISDKKVVDWNDLRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKKKQGKRITGLQF 509 (712)
T ss_pred cccceEEeecCcCeeEeehhhhhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeeccCccccCceeeeeEe
Confidence 99999999999888877777778888999999999999999999999999887665433221 236999998
Q ss_pred CCCCC-EEEEEeCCCeEEEEecCCceeeeEEeeecCc--eeEEEECCCCCEEEEeeCCCcEEEEecCC
Q 026765 158 NMTGE-MFFLTTGNGTVEVLTYPSLRPLDTVVAHTAG--CYCIAIDPMGRYFAVGSADSLVSLWDISE 222 (233)
Q Consensus 158 ~~~~~-~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~--v~~i~~~p~~~~las~s~dg~v~iwd~~~ 222 (233)
.|... .+++.+.|..|+|||.++...+..|.++... =...+|+.+|++|++|++|..|+||++.+
T Consensus 510 ~p~~~~~vLVTSnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs~VYiW~~~~ 577 (712)
T KOG0283|consen 510 FPGDPDEVLVTSNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSASEDSWVYIWKNDS 577 (712)
T ss_pred cCCCCCeEEEecCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEeecCceEEEEeCCC
Confidence 86543 5899999999999999877777777765432 24568999999999999999999999843
No 44
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.97 E-value=1.6e-28 Score=214.08 Aligned_cols=203 Identities=19% Similarity=0.347 Sum_probs=169.5
Q ss_pred ccccEEEEEECcC-CCEEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCCeEEEEECC
Q 026765 19 HKKKVHSVAWNCT-GTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDAR 97 (233)
Q Consensus 19 H~~~V~~~~~~~~-~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~iwd~~ 97 (233)
+...|.+++|++. +.+|+|++.|++|++||+... .....+.+|...|.+++|+|.++.+|++|+.|+.|++||++
T Consensus 531 ~~~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~----~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~ 606 (793)
T PLN00181 531 SRSKLSGICWNSYIKSQVASSNFEGVVQVWDVARS----QLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSIN 606 (793)
T ss_pred ccCceeeEEeccCCCCEEEEEeCCCeEEEEECCCC----eEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECC
Confidence 4568999999874 789999999999999998642 12345779999999999998667789999999999999999
Q ss_pred CCeeeeeeeecCCeeEEEE-CCCCCeEEEEcCCCcEEEEEcCCCe-eeee-eecCceeeEEEECCCCCEEEEEeCCCeEE
Q 026765 98 SGKCSQQAELSGENINITY-KPDGTHIAVGNRDDELTILDVRKFK-PIHR-RKFGYEVNEIAWNMTGEMFFLTTGNGTVE 174 (233)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~d~~i~i~d~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 174 (233)
++.+...+.....+.++.| .+++.++++|+.|+.|++||++..+ ++.. ..+...+..+.|. ++..+++++.|+.++
T Consensus 607 ~~~~~~~~~~~~~v~~v~~~~~~g~~latgs~dg~I~iwD~~~~~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~D~~ik 685 (793)
T PLN00181 607 QGVSIGTIKTKANICCVQFPSESGRSLAFGSADHKVYYYDLRNPKLPLCTMIGHSKTVSYVRFV-DSSTLVSSSTDNTLK 685 (793)
T ss_pred CCcEEEEEecCCCeEEEEEeCCCCCEEEEEeCCCeEEEEECCCCCccceEecCCCCCEEEEEEe-CCCEEEEEECCCEEE
Confidence 8887776665566777888 4579999999999999999998754 2322 2344578899996 788999999999999
Q ss_pred EEecCC------ceeeeEEeeecCceeEEEECCCCCEEEEeeCCCcEEEEecCCcEEE
Q 026765 175 VLTYPS------LRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCV 226 (233)
Q Consensus 175 ~~~~~~------~~~~~~~~~~~~~v~~i~~~p~~~~las~s~dg~v~iwd~~~~~~i 226 (233)
+||.+. ..++..+.+|...+.+++|+|++++||+|+.|+.|+||+.....++
T Consensus 686 iWd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~ 743 (793)
T PLN00181 686 LWDLSMSISGINETPLHSFMGHTNVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPV 743 (793)
T ss_pred EEeCCCCccccCCcceEEEcCCCCCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCce
Confidence 999864 3567788899999999999999999999999999999998765444
No 45
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.97 E-value=3e-29 Score=189.06 Aligned_cols=202 Identities=25% Similarity=0.448 Sum_probs=169.5
Q ss_pred eCccccEEEEEECcCCCEEEEEeCCCCEEEEecccCC---------------------CCceeeEEEecCcCcEEEEEEc
Q 026765 17 TGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHG---------------------HGKVKDIELRGHADSVDQLCWD 75 (233)
Q Consensus 17 ~~H~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~---------------------~~~~~~~~~~~h~~~v~~~~~~ 75 (233)
.||.+.|-++..+++|.+++|||+|.+++||+..... ..+.....+.||.++|.++.|+
T Consensus 190 ~GHk~~V~sVsv~~sgtr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~ 269 (423)
T KOG0313|consen 190 RGHKRSVDSVSVDSSGTRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWS 269 (423)
T ss_pred cccccceeEEEecCCCCeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEc
Confidence 4999999999999999999999999999999932110 0112234678999999999998
Q ss_pred CCCCCEEEEEeCCCeEEEEECCCCeeeeeeeecCCeeEEEECCCCCeEEEEcCCCcEEEEEcCCCe--eeeeee--cCce
Q 026765 76 PKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRDDELTILDVRKFK--PIHRRK--FGYE 151 (233)
Q Consensus 76 ~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~--~~~~~~--~~~~ 151 (233)
+ ...++|+++|.+|+.||+.++++...........++.++|..+.|++|+.|..+++||.|+.. .+.... +..=
T Consensus 270 d--~~v~yS~SwDHTIk~WDletg~~~~~~~~~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH~nw 347 (423)
T KOG0313|consen 270 D--ATVIYSVSWDHTIKVWDLETGGLKSTLTTNKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSVVSQSLIGHKNW 347 (423)
T ss_pred C--CCceEeecccceEEEEEeecccceeeeecCcceeEeecccccceeeecCCCCceeecCCCCCCCceeEEeeecchhh
Confidence 7 357789999999999999999988887777778899999999999999999999999998753 222222 2234
Q ss_pred eeEEEECCCCCE-EEEEeCCCeEEEEecCCce-eeeEEeeecCceeEEEECCCCCEEEEeeCCCcEEEEecC
Q 026765 152 VNEIAWNMTGEM-FFLTTGNGTVEVLTYPSLR-PLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDIS 221 (233)
Q Consensus 152 ~~~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~-~~~~~~~~~~~v~~i~~~p~~~~las~s~dg~v~iwd~~ 221 (233)
+..+.|+|...+ +++++.|+++++||.++.+ ++..+.+|...|.++.|+. +.++++|+.|.+|+|+.-.
T Consensus 348 Vssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~DKvl~vdW~~-~~~IvSGGaD~~l~i~~~~ 418 (423)
T KOG0313|consen 348 VSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDKVLSVDWNE-GGLIVSGGADNKLRIFKGS 418 (423)
T ss_pred hhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccCCceEEEEeccC-CceEEeccCcceEEEeccc
Confidence 788999998876 5677889999999999877 9999999999999999974 6799999999999998654
No 46
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=99.97 E-value=1.1e-27 Score=184.04 Aligned_cols=214 Identities=30% Similarity=0.534 Sum_probs=181.6
Q ss_pred ceeeeCccccEEEEEECcCCCEEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCCeEE
Q 026765 13 SREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVR 92 (233)
Q Consensus 13 ~~~~~~H~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~ 92 (233)
...+.+|...+..+.|+|+++.+++++.|+.|++|++.... ....+..|...+.++.|+|+ ..++++++.|+.+.
T Consensus 44 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~~~~~~~----~~~~~~~~~~~i~~~~~~~~-~~~~~~~~~~~~i~ 118 (289)
T cd00200 44 LRTLKGHTGPVRDVAASADGTYLASGSSDKTIRLWDLETGE----CVRTLTGHTSYVSSVAFSPD-GRILSSSSRDKTIK 118 (289)
T ss_pred EEEEecCCcceeEEEECCCCCEEEEEcCCCeEEEEEcCccc----ceEEEeccCCcEEEEEEcCC-CCEEEEecCCCeEE
Confidence 35677899999999999999999999999999999987421 22356688889999999987 46777887899999
Q ss_pred EEECCCCeeeeeeee-cCCeeEEEECCCCCeEEEEcCCCcEEEEEcCCCeeeeeeec-CceeeEEEECCCCCEEEEEeCC
Q 026765 93 LWDARSGKCSQQAEL-SGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKF-GYEVNEIAWNMTGEMFFLTTGN 170 (233)
Q Consensus 93 iwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 170 (233)
+||+++++....+.. ...+.++.++|++.++++++.++.+.+||++..+....... ...+.++.|+++++.+++++.+
T Consensus 119 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~ 198 (289)
T cd00200 119 VWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSD 198 (289)
T ss_pred EEECCCcEEEEEeccCCCcEEEEEEcCcCCEEEEEcCCCcEEEEEccccccceeEecCccccceEEECCCcCEEEEecCC
Confidence 999997776665553 34567899999988888888899999999987766655443 3478999999999999999999
Q ss_pred CeEEEEecCCceeeeEEeeecCceeEEEECCCCCEEEEeeCCCcEEEEecCCcEEEEeeec
Q 026765 171 GTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTK 231 (233)
Q Consensus 171 ~~v~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~las~s~dg~v~iwd~~~~~~i~~~~~ 231 (233)
+.+.+|+.+..+....+..|...+.+++|+|++.++++++.||.|++||+.++.++..+..
T Consensus 199 ~~i~i~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~~~~~~~ 259 (289)
T cd00200 199 GTIKLWDLSTGKCLGTLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLSG 259 (289)
T ss_pred CcEEEEECCCCceecchhhcCCceEEEEEcCCCcEEEEEcCCCcEEEEEcCCceeEEEccc
Confidence 9999999998888888878999999999999988999998899999999998888887764
No 47
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=99.97 E-value=2e-28 Score=191.49 Aligned_cols=214 Identities=22% Similarity=0.402 Sum_probs=174.2
Q ss_pred ceeeeCccccEEEEEECcCCCEEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeC-CC--
Q 026765 13 SREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASG-DK-- 89 (233)
Q Consensus 13 ~~~~~~H~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~-d~-- 89 (233)
...|.+|..+++...|+|.|.++|||...|+|||||... .+.+...+++.-.++|.+++|++++.+++++|-. ++
T Consensus 52 ~~iYtEH~~~vtVAkySPsG~yiASGD~sG~vRIWdtt~--~~hiLKnef~v~aG~I~Di~Wd~ds~RI~avGEGrerfg 129 (603)
T KOG0318|consen 52 VDIYTEHAHQVTVAKYSPSGFYIASGDVSGKVRIWDTTQ--KEHILKNEFQVLAGPIKDISWDFDSKRIAAVGEGRERFG 129 (603)
T ss_pred eeeeccccceeEEEEeCCCceEEeecCCcCcEEEEeccC--cceeeeeeeeecccccccceeCCCCcEEEEEecCcccee
Confidence 356899999999999999999999999999999999753 2445555777778899999999998887777733 33
Q ss_pred eEEEEECCCCeeeeeeeecCC-eeEEEECCCC-CeEEEEcCCCcEEEEEcCCCeeeee-eecCceeeEEEECCCCCEEEE
Q 026765 90 TVRLWDARSGKCSQQAELSGE-NINITYKPDG-THIAVGNRDDELTILDVRKFKPIHR-RKFGYEVNEIAWNMTGEMFFL 166 (233)
Q Consensus 90 ~i~iwd~~~~~~~~~~~~~~~-~~~~~~~~~~-~~l~~~~~d~~i~i~d~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 166 (233)
.+.+||. +.....+..+.. +.++.|.|.. -++++|+.|+.+.+|+-..++--.. ..+..-++++.++|||+++++
T Consensus 130 ~~F~~DS--G~SvGei~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRysPDG~~Fat 207 (603)
T KOG0318|consen 130 HVFLWDS--GNSVGEITGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRYSPDGSRFAT 207 (603)
T ss_pred EEEEecC--CCccceeeccceeEeeeeccCCCceEEEeccCCCeEEEeeCCCeeeeecccccccceeeEEECCCCCeEEE
Confidence 3455664 444455444433 4468888865 4688999999999998544332222 223446999999999999999
Q ss_pred EeCCCeEEEEecCCceeeeEEe---eecCceeEEEECCCCCEEEEeeCCCcEEEEecCCcEEEEeee
Q 026765 167 TTGNGTVEVLTYPSLRPLDTVV---AHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFT 230 (233)
Q Consensus 167 ~~~~~~v~~~~~~~~~~~~~~~---~~~~~v~~i~~~p~~~~las~s~dg~v~iwd~~~~~~i~~~~ 230 (233)
.+.||++.+||-.+++.+..+. +|.+.|++++|+||++.++++|.|.++||||+.+.++++++.
T Consensus 208 ~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~ 274 (603)
T KOG0318|consen 208 AGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWP 274 (603)
T ss_pred ecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeeccceEEEee
Confidence 9999999999999999999888 899999999999999999999999999999999999999975
No 48
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.97 E-value=5.2e-29 Score=187.82 Aligned_cols=223 Identities=18% Similarity=0.240 Sum_probs=178.4
Q ss_pred CCCccceeeeCccccEEEEEECcC---CCEEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEE
Q 026765 8 FKNLHSREYTGHKKKVHSVAWNCT---GTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIAT 84 (233)
Q Consensus 8 ~~~~~~~~~~~H~~~V~~~~~~~~---~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s 84 (233)
.+....+.+.||.++|.+++|--. ...|+|||.|+++++|..+............+||.+.|.+++..+++ ..++|
T Consensus 132 ~~Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sg-tr~~S 210 (423)
T KOG0313|consen 132 LKGKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNVGENKVKALKVCRGHKRSVDSVSVDSSG-TRFCS 210 (423)
T ss_pred cCCceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecCchhhhhHHhHhcccccceeEEEecCCC-CeEEe
Confidence 455677889999999999998433 34699999999999998876443222222345999999999999876 46789
Q ss_pred EeCCCeEEEEECCCC-------------------------eeeeeeeec-CCeeEEEECCCCCeEEEEcCCCcEEEEEcC
Q 026765 85 ASGDKTVRLWDARSG-------------------------KCSQQAELS-GENINITYKPDGTHIAVGNRDDELTILDVR 138 (233)
Q Consensus 85 g~~d~~i~iwd~~~~-------------------------~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~ 138 (233)
|+.|..|+||+.... .++..+..+ ..+..+.|++ ...+.+++.|.+|+.||+.
T Consensus 211 gS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d-~~v~yS~SwDHTIk~WDle 289 (423)
T KOG0313|consen 211 GSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD-ATVIYSVSWDHTIKVWDLE 289 (423)
T ss_pred ecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeEEEcC-CCceEeecccceEEEEEee
Confidence 999999999993211 011112112 2345678877 6788999999999999999
Q ss_pred CCeeeeeeecCceeeEEEECCCCCEEEEEeCCCeEEEEecCCc---eeeeEEeeecCceeEEEECCCCC-EEEEeeCCCc
Q 026765 139 KFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSL---RPLDTVVAHTAGCYCIAIDPMGR-YFAVGSADSL 214 (233)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~~~~~~~~~~v~~i~~~p~~~-~las~s~dg~ 214 (233)
+.+....+..+...+++..++..+++++|+.|..+++||.+++ -...++.+|...|.++.|+|... +|++|+.|++
T Consensus 290 tg~~~~~~~~~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t 369 (423)
T KOG0313|consen 290 TGGLKSTLTTNKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNT 369 (423)
T ss_pred cccceeeeecCcceeEeecccccceeeecCCCCceeecCCCCCCCceeEEeeecchhhhhheecCCCCceEEEEEecCCe
Confidence 9988888888889999999999999999999999999998754 34567889999999999999876 5899999999
Q ss_pred EEEEecCCcE-EEEeeecC
Q 026765 215 VSLWDISEML-CVRTFTKL 232 (233)
Q Consensus 215 v~iwd~~~~~-~i~~~~~~ 232 (233)
+++||+++.. +++.+..+
T Consensus 370 ~klWDvRS~k~plydI~~h 388 (423)
T KOG0313|consen 370 VKLWDVRSTKAPLYDIAGH 388 (423)
T ss_pred EEEEEeccCCCcceeeccC
Confidence 9999999877 78877665
No 49
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.97 E-value=6.2e-29 Score=200.91 Aligned_cols=209 Identities=19% Similarity=0.299 Sum_probs=180.4
Q ss_pred ccceeeeCccccEEEEEECcCC-CEEEEEeCCCCEEEEecccCCCCc-ee----eEEEecCcCcEEEEEEcCCCCCEEEE
Q 026765 11 LHSREYTGHKKKVHSVAWNCTG-TKLASGSVDQTARVWHIEPHGHGK-VK----DIELRGHADSVDQLCWDPKHADLIAT 84 (233)
Q Consensus 11 ~~~~~~~~H~~~V~~~~~~~~~-~~l~s~~~D~~v~vW~~~~~~~~~-~~----~~~~~~h~~~v~~~~~~~~~~~~l~s 84 (233)
.......+|++.|.+++++.-+ ..|+|+|.|+++|+|++....... .. +..-..|...|++++++|++ +++++
T Consensus 402 ~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~~~~~~~~~t~~aHdKdIN~Vaia~nd-kLiAT 480 (775)
T KOG0319|consen 402 LCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAFPIVLTCRYTERAHDKDINCVAIAPND-KLIAT 480 (775)
T ss_pred hhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccccceehhhHHHHhhcccccceEecCCC-ceEEe
Confidence 3445678999999999997755 689999999999999985411111 01 11224799999999999985 69999
Q ss_pred EeCCCeEEEEECCCCeeeeeeeec-CCeeEEEECCCCCeEEEEcCCCcEEEEEcCCCeeeeeee-cCceeeEEEECCCCC
Q 026765 85 ASGDKTVRLWDARSGKCSQQAELS-GENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRK-FGYEVNEIAWNMTGE 162 (233)
Q Consensus 85 g~~d~~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~-~~~~~~~~~~~~~~~ 162 (233)
||.|++.+||++...+....+..+ ..+.++.|+|....+++++.|.+++||.+.++..+.... +...|..+.|-.+++
T Consensus 481 ~SqDktaKiW~le~~~l~~vLsGH~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSClkT~eGH~~aVlra~F~~~~~ 560 (775)
T KOG0319|consen 481 GSQDKTAKIWDLEQLRLLGVLSGHTRGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSCLKTFEGHTSAVLRASFIRNGK 560 (775)
T ss_pred cccccceeeecccCceEEEEeeCCccceEEEEeccccceeEeccCCceEEEEEeccceeeeeecCccceeEeeeeeeCCc
Confidence 999999999999977766666554 456889999999999999999999999999998888776 677899999999999
Q ss_pred EEEEEeCCCeEEEEecCCceeeeEEeeecCceeEEEECCCCCEEEEeeCCCcEEEEec
Q 026765 163 MFFLTTGNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDI 220 (233)
Q Consensus 163 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~las~s~dg~v~iwd~ 220 (233)
.+++++.||.+++|+..+.++..++..|...|++++.+|.+.+++||+.||.|.+|.=
T Consensus 561 qliS~~adGliKlWnikt~eC~~tlD~H~DrvWaL~~~~~~~~~~tgg~Dg~i~~wkD 618 (775)
T KOG0319|consen 561 QLISAGADGLIKLWNIKTNECEMTLDAHNDRVWALSVSPLLDMFVTGGGDGRIIFWKD 618 (775)
T ss_pred EEEeccCCCcEEEEeccchhhhhhhhhccceeEEEeecCccceeEecCCCeEEEEeec
Confidence 9999999999999999999999999999999999999999999999999999999963
No 50
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=99.97 E-value=5.8e-28 Score=175.02 Aligned_cols=202 Identities=20% Similarity=0.428 Sum_probs=160.4
Q ss_pred ceeeeCccccEEEEEECcCCCEEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCCeEE
Q 026765 13 SREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVR 92 (233)
Q Consensus 13 ~~~~~~H~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~ 92 (233)
..++.||.+.|.|++|+++|.+|||++.|++|-||.+.... +--+...+.+|+.-|--+.|||. ..+|+|+++|.+|+
T Consensus 98 v~~lEGHEnEVK~Vaws~sG~~LATCSRDKSVWiWe~dedd-Efec~aVL~~HtqDVK~V~WHPt-~dlL~S~SYDnTIk 175 (312)
T KOG0645|consen 98 VATLEGHENEVKCVAWSASGNYLATCSRDKSVWIWEIDEDD-EFECIAVLQEHTQDVKHVIWHPT-EDLLFSCSYDNTIK 175 (312)
T ss_pred EeeeeccccceeEEEEcCCCCEEEEeeCCCeEEEEEecCCC-cEEEEeeeccccccccEEEEcCC-cceeEEeccCCeEE
Confidence 45789999999999999999999999999999999987322 22233357899999999999997 46899999999999
Q ss_pred EEECC-CC--eeeeeeeec-CCeeEEEECCCCCeEEEEcCCCcEEEEEcCCCeeeeeeecCceeeEEEECCCCCEEEEEe
Q 026765 93 LWDAR-SG--KCSQQAELS-GENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTT 168 (233)
Q Consensus 93 iwd~~-~~--~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (233)
+|.-. .. .+.+++..+ ..+.+++|++.|..|++++.|++++||-+...- ...+..++..+.|. ...|++++
T Consensus 176 ~~~~~~dddW~c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~~~---~~~~sr~~Y~v~W~--~~~IaS~g 250 (312)
T KOG0645|consen 176 VYRDEDDDDWECVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYTDL---SGMHSRALYDVPWD--NGVIASGG 250 (312)
T ss_pred EEeecCCCCeeEEEEecCccceEEEEEecCCCceEEEecCCcceEeeeeccCc---chhcccceEeeeec--ccceEecc
Confidence 99866 33 455655543 367789999999999999999999999865211 11233467788887 56899999
Q ss_pred CCCeEEEEecCCc--ee----e-eEEeeecCceeEEEECCC-CCEEEEeeCCCcEEEEecC
Q 026765 169 GNGTVEVLTYPSL--RP----L-DTVVAHTAGCYCIAIDPM-GRYFAVGSADSLVSLWDIS 221 (233)
Q Consensus 169 ~~~~v~~~~~~~~--~~----~-~~~~~~~~~v~~i~~~p~-~~~las~s~dg~v~iwd~~ 221 (233)
+|+.++++..... ++ + ..-..|...|++++|+|. .+.|++|+.||.|++|.+.
T Consensus 251 gD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV~w~p~~~~~L~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 251 GDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSVQWNPKVSNRLASGGDDGIVNFWELE 311 (312)
T ss_pred CCCEEEEEEecCCCCCchHHHHHhhhcccccccceEEEcCCCCCceeecCCCceEEEEEec
Confidence 9999999975431 11 1 123468889999999995 6789999999999999875
No 51
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=5.1e-29 Score=179.10 Aligned_cols=211 Identities=23% Similarity=0.357 Sum_probs=170.1
Q ss_pred CCCCCccceeeeCccccEEEEEECcC-CCEEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEE
Q 026765 6 IPFKNLHSREYTGHKKKVHSVAWNCT-GTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIAT 84 (233)
Q Consensus 6 ~~~~~~~~~~~~~H~~~V~~~~~~~~-~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s 84 (233)
.+++..+++.|..|...|.++.|++- +..++++|+|++||+|+.+... ....+.||...|+...|+|..++++++
T Consensus 90 ~~~~s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~----Sv~Tf~gh~~~Iy~a~~sp~~~nlfas 165 (311)
T KOG0277|consen 90 LTMPSKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPN----SVQTFNGHNSCIYQAAFSPHIPNLFAS 165 (311)
T ss_pred cCCCCcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCc----ceEeecCCccEEEEEecCCCCCCeEEE
Confidence 34566678889999999999999985 5668888999999999986532 223588999999999999999999999
Q ss_pred EeCCCeEEEEECCCCeeeeeeeec-CCeeEEEECC-CCCeEEEEcCCCcEEEEEcCCCe-eeeee-ecCceeeEEEECCC
Q 026765 85 ASGDKTVRLWDARSGKCSQQAELS-GENINITYKP-DGTHIAVGNRDDELTILDVRKFK-PIHRR-KFGYEVNEIAWNMT 160 (233)
Q Consensus 85 g~~d~~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~-~~~~~-~~~~~~~~~~~~~~ 160 (233)
++.|+.+++||++.......++.+ .++.++.|+. +.+.+++|+.|+.|+.||+++.+ ++..+ .++..|..+.|+|-
T Consensus 166 ~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sph 245 (311)
T KOG0277|consen 166 ASGDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTPLFELNGHGLAVRKVKFSPH 245 (311)
T ss_pred ccCCceEEEEEecCCCceeEEEeccceeEeecccccCCcEEEecCCCceEEEEehhhccccceeecCCceEEEEEecCcc
Confidence 999999999999876544445444 4778888876 56678899999999999998755 33332 35678999999987
Q ss_pred CC-EEEEEeCCCeEEEEecCCce-eeeEEeeecCceeEEEECCC-CCEEEEeeCCCcEEEEec
Q 026765 161 GE-MFFLTTGNGTVEVLTYPSLR-PLDTVVAHTAGCYCIAIDPM-GRYFAVGSADSLVSLWDI 220 (233)
Q Consensus 161 ~~-~~~~~~~~~~v~~~~~~~~~-~~~~~~~~~~~v~~i~~~p~-~~~las~s~dg~v~iwd~ 220 (233)
.. .+++++-|=++++|+..... .+.+..-|.+-|..+.||+. ..++|+.+-|+.++||+.
T Consensus 246 ~~~lLaSasYDmT~riw~~~~~ds~~e~~~~HtEFv~g~Dws~~~~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 246 HASLLASASYDMTVRIWDPERQDSAIETVDHHTEFVCGLDWSLFDPGQVASTGWDELLYVWNP 308 (311)
T ss_pred hhhHhhhccccceEEecccccchhhhhhhhccceEEeccccccccCceeeecccccceeeecc
Confidence 64 56777889999999987543 34455678888999999985 468999999999999984
No 52
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.96 E-value=5e-28 Score=177.80 Aligned_cols=212 Identities=22% Similarity=0.348 Sum_probs=165.9
Q ss_pred CccccEEEEEECcC-CCEEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCCeEEEEEC
Q 026765 18 GHKKKVHSVAWNCT-GTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDA 96 (233)
Q Consensus 18 ~H~~~V~~~~~~~~-~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~iwd~ 96 (233)
.-.+.|.+|+|||. ..+++.+|+|++||+|+++..+.... .....|..+|.+++|+.++ ..+++|+.|+++++||+
T Consensus 25 pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~--ka~~~~~~PvL~v~Wsddg-skVf~g~~Dk~~k~wDL 101 (347)
T KOG0647|consen 25 PPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVP--KAQQSHDGPVLDVCWSDDG-SKVFSGGCDKQAKLWDL 101 (347)
T ss_pred CcccchheeEeccccCceEEecccCCceEEEEEecCCcccc--hhhhccCCCeEEEEEccCC-ceEEeeccCCceEEEEc
Confidence 34778999999995 45666889999999999976422111 1234688999999999876 56789999999999999
Q ss_pred CCCeeeeeeeecCCeeEEEECCCCC--eEEEEcCCCcEEEEEcCCCeeeeeeecC-------------------------
Q 026765 97 RSGKCSQQAELSGENINITYKPDGT--HIAVGNRDDELTILDVRKFKPIHRRKFG------------------------- 149 (233)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~--~l~~~~~d~~i~i~d~~~~~~~~~~~~~------------------------- 149 (233)
.+++..+...+..++..+.|-+... .|++|+.|++|+.||+|...++....+.
T Consensus 102 ~S~Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~LPeRvYa~Dv~~pm~vVata~r~i~vy 181 (347)
T KOG0647|consen 102 ASGQVSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQLPERVYAADVLYPMAVVATAERHIAVY 181 (347)
T ss_pred cCCCeeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeeccceeeehhccCceeEEEecCCcEEEE
Confidence 9998777777777888888866555 7899999999999999876655444322
Q ss_pred -----------------ceeeEEEECCCCCEEEEEeCCCeEEEEecCCc--eeeeEEeeecC---------ceeEEEECC
Q 026765 150 -----------------YEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSL--RPLDTVVAHTA---------GCYCIAIDP 201 (233)
Q Consensus 150 -----------------~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~~~~~~~~~---------~v~~i~~~p 201 (233)
..+.+++..++.+..++|+-+|.+.+.....+ +.-..|..|.. .|++|+|+|
T Consensus 182 nL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP 261 (347)
T KOG0647|consen 182 NLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFHP 261 (347)
T ss_pred EcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCceEEecceEeec
Confidence 12446666677777889999999988877664 44445667753 367899999
Q ss_pred CCCEEEEeeCCCcEEEEecCCcEEEEeeecC
Q 026765 202 MGRYFAVGSADSLVSLWDISEMLCVRTFTKL 232 (233)
Q Consensus 202 ~~~~las~s~dg~v~iwd~~~~~~i~~~~~~ 232 (233)
....|+|++.||+..+||-+....+++++.+
T Consensus 262 ~hgtlvTaGsDGtf~FWDkdar~kLk~s~~~ 292 (347)
T KOG0647|consen 262 VHGTLVTAGSDGTFSFWDKDARTKLKTSETH 292 (347)
T ss_pred ccceEEEecCCceEEEecchhhhhhhccCcC
Confidence 9999999999999999999988888776654
No 53
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.96 E-value=1.5e-28 Score=187.12 Aligned_cols=212 Identities=20% Similarity=0.377 Sum_probs=179.9
Q ss_pred cceeeeCccccEEEEEECcCCCEEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCCeE
Q 026765 12 HSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTV 91 (233)
Q Consensus 12 ~~~~~~~H~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i 91 (233)
.+.++.|-.++|++++|.++++++++++.|+.+++|+++... ...++.||++.|+++.|...... +++|+.|.+|
T Consensus 211 ~~~tLaGs~g~it~~d~d~~~~~~iAas~d~~~r~Wnvd~~r----~~~TLsGHtdkVt~ak~~~~~~~-vVsgs~DRti 285 (459)
T KOG0288|consen 211 LISTLAGSLGNITSIDFDSDNKHVIAASNDKNLRLWNVDSLR----LRHTLSGHTDKVTAAKFKLSHSR-VVSGSADRTI 285 (459)
T ss_pred hhhhhhccCCCcceeeecCCCceEEeecCCCceeeeeccchh----hhhhhcccccceeeehhhccccc-eeeccccchh
Confidence 345678889999999999999999999999999999987422 12257899999999999875433 7899999999
Q ss_pred EEEECCCCeeeeeeeecCCeeEEEECCCCCeEEEEcCCCcEEEEEcCCCeeeeeeecCceeeEEEECCCCCEEEEEeCCC
Q 026765 92 RLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNG 171 (233)
Q Consensus 92 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (233)
++||+....|..+..+......+... ...+++|..|++|++||.++.........+..++++..++++..+++.+.|.
T Consensus 286 K~WDl~k~~C~kt~l~~S~cnDI~~~--~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg~vtSl~ls~~g~~lLsssRDd 363 (459)
T KOG0288|consen 286 KLWDLQKAYCSKTVLPGSQCNDIVCS--ISDVISGHFDKKVRFWDIRSADKTRSVPLGGRVTSLDLSMDGLELLSSSRDD 363 (459)
T ss_pred hhhhhhhhheeccccccccccceEec--ceeeeecccccceEEEeccCCceeeEeecCcceeeEeeccCCeEEeeecCCC
Confidence 99999998887776555444445444 4578899999999999999999988888888999999999999999999999
Q ss_pred eEEEEecCCceeeeEEeeec----CceeEEEECCCCCEEEEeeCCCcEEEEecCCcEEEEeee
Q 026765 172 TVEVLTYPSLRPLDTVVAHT----AGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFT 230 (233)
Q Consensus 172 ~v~~~~~~~~~~~~~~~~~~----~~v~~i~~~p~~~~las~s~dg~v~iwd~~~~~~i~~~~ 230 (233)
++.++|.++.+....+.+-+ ...+.+.|||++.|+|+||.||.|+||++.++++.+.+.
T Consensus 364 tl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~ 426 (459)
T KOG0288|consen 364 TLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLS 426 (459)
T ss_pred ceeeeecccccEEEEeeccccccccccceeEECCCCceeeeccCCCcEEEEEccCceEEEEec
Confidence 99999999988877766422 236778999999999999999999999999999877654
No 54
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.96 E-value=6.2e-27 Score=190.02 Aligned_cols=217 Identities=22% Similarity=0.382 Sum_probs=185.6
Q ss_pred eeeeCccccEEEEEECcCCCEEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCCeEEE
Q 026765 14 REYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRL 93 (233)
Q Consensus 14 ~~~~~H~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~i 93 (233)
++|.||...|.++.|+.|.++|++||.|.++|+|.++.... .....+.+|+++|...-|..+. .-+++-+.||.+.+
T Consensus 139 r~~~g~fddi~si~Ws~DSr~l~~gsrD~s~rl~~v~~~k~--~~~~~l~gHkd~VvacfF~~~~-~~l~tvskdG~l~~ 215 (893)
T KOG0291|consen 139 RTYLGHFDDITSIDWSDDSRLLVTGSRDLSARLFGVDGNKN--LFTYALNGHKDYVVACFFGANS-LDLYTVSKDGALFV 215 (893)
T ss_pred eeecCCccceeEEEeccCCceEEeccccceEEEEEeccccc--cceEeccCCCcceEEEEeccCc-ceEEEEecCceEEE
Confidence 58899999999999999999999999999999999975432 3345678999999999888764 55789999999999
Q ss_pred EECCCC-----------------------ee---------eeeeee---cCCeeEEEECCCCCeEEEEcCCCcEEEEEcC
Q 026765 94 WDARSG-----------------------KC---------SQQAEL---SGENINITYKPDGTHIAVGNRDDELTILDVR 138 (233)
Q Consensus 94 wd~~~~-----------------------~~---------~~~~~~---~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~ 138 (233)
|..... +. .....+ +..+.+.+|++.-+.+++|-..|...+|++.
T Consensus 216 W~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~k~~ln~~~~kvtaa~fH~~t~~lvvgFssG~f~LyelP 295 (893)
T KOG0291|consen 216 WTCDLRPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKTKKHYLNQNSSKVTAAAFHKGTNLLVVGFSSGEFGLYELP 295 (893)
T ss_pred EEecCCCcccccccccccccccccccccchhhhcceEEEEEEeeeecccccceeeeeccCCceEEEEEecCCeeEEEecC
Confidence 976510 00 000001 1345578899999999999999999999999
Q ss_pred CCeeeeeeecC-ceeeEEEECCCCCEEEEEeCC-CeEEEEecCCceeeeEEeeecCceeEEEECCCCCEEEEeeCCCcEE
Q 026765 139 KFKPIHRRKFG-YEVNEIAWNMTGEMFFLTTGN-GTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVS 216 (233)
Q Consensus 139 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~las~s~dg~v~ 216 (233)
....++....+ .++..++|+..|+.++.++.. |.+.+|++.+-..+.+..+|...+++++++|||+++|+|++||+|+
T Consensus 296 ~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVK 375 (893)
T KOG0291|consen 296 DFNLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQGHSDRITSLAYSPDGQLIATGAEDGKVK 375 (893)
T ss_pred CceEEEEeecccceeeEEEecccCCEEEEcCCccceEEEEEeeccceeeeccccccceeeEEECCCCcEEEeccCCCcEE
Confidence 99999988765 789999999999999999875 9999999998888888999999999999999999999999999999
Q ss_pred EEecCCcEEEEeeecCC
Q 026765 217 LWDISEMLCVRTFTKLE 233 (233)
Q Consensus 217 iwd~~~~~~i~~~~~~~ 233 (233)
|||..++.|+.||.++.
T Consensus 376 vWn~~SgfC~vTFteHt 392 (893)
T KOG0291|consen 376 VWNTQSGFCFVTFTEHT 392 (893)
T ss_pred EEeccCceEEEEeccCC
Confidence 99999999999999874
No 55
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=2.1e-28 Score=175.94 Aligned_cols=201 Identities=19% Similarity=0.279 Sum_probs=163.6
Q ss_pred cccEEEEEECcCC-CEEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCCeEEEEECCC
Q 026765 20 KKKVHSVAWNCTG-TKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARS 98 (233)
Q Consensus 20 ~~~V~~~~~~~~~-~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~iwd~~~ 98 (233)
.+.+..++|++.. +++++++.||++|+||...... ....++.|...|.++.|++.....++++++|++|++|+...
T Consensus 60 ~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~~~s~---Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r 136 (311)
T KOG0277|consen 60 EDGLFDVAWSENHENQVIAASGDGSLRLFDLTMPSK---PIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNR 136 (311)
T ss_pred ccceeEeeecCCCcceEEEEecCceEEEeccCCCCc---chhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCC
Confidence 6678899999864 6789999999999999643222 22357789999999999998888888999999999999988
Q ss_pred CeeeeeeeecC-CeeEEEECCC-CCeEEEEcCCCcEEEEEcCCCeeeeeee-cCceeeEEEECCCC-CEEEEEeCCCeEE
Q 026765 99 GKCSQQAELSG-ENINITYKPD-GTHIAVGNRDDELTILDVRKFKPIHRRK-FGYEVNEIAWNMTG-EMFFLTTGNGTVE 174 (233)
Q Consensus 99 ~~~~~~~~~~~-~~~~~~~~~~-~~~l~~~~~d~~i~i~d~~~~~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~v~ 174 (233)
++.++++..+. -++..+|+|. ++.+++++.|+.+++||++.......++ +..++.++.|++-. +.+++++.|+.++
T Consensus 137 ~~Sv~Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~~i~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr 216 (311)
T KOG0277|consen 137 PNSVQTFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFMSIEAHNSEILCCDWSKYNHNVLATGGVDNLVR 216 (311)
T ss_pred CcceEeecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCceeEEEeccceeEeecccccCCcEEEecCCCceEE
Confidence 87777765543 3456889984 6788999999999999998654333333 45689999998754 5567788899999
Q ss_pred EEecCCc-eeeeEEeeecCceeEEEECCCC-CEEEEeeCCCcEEEEecCCc
Q 026765 175 VLTYPSL-RPLDTVVAHTAGCYCIAIDPMG-RYFAVGSADSLVSLWDISEM 223 (233)
Q Consensus 175 ~~~~~~~-~~~~~~~~~~~~v~~i~~~p~~-~~las~s~dg~v~iwd~~~~ 223 (233)
.||++.. .++..+.+|+-.|..++|||.. ..||+++.|-+++|||....
T Consensus 217 ~wDir~~r~pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ 267 (311)
T KOG0277|consen 217 GWDIRNLRTPLFELNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQ 267 (311)
T ss_pred EEehhhccccceeecCCceEEEEEecCcchhhHhhhccccceEEecccccc
Confidence 9999864 4788889999999999999976 57999999999999999733
No 56
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=99.96 E-value=3.7e-28 Score=182.31 Aligned_cols=211 Identities=18% Similarity=0.291 Sum_probs=181.1
Q ss_pred cceeeeCccccEEEEEECcCCCEEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCCeE
Q 026765 12 HSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTV 91 (233)
Q Consensus 12 ~~~~~~~H~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i 91 (233)
...++.||...|..+++|+-..+|++++.|+.||.||++... .+ ..+.||-..|++++.+|.- ..|++|+.|.++
T Consensus 185 LkltltGhi~~vr~vavS~rHpYlFs~gedk~VKCwDLe~nk--vI--R~YhGHlS~V~~L~lhPTl-dvl~t~grDst~ 259 (460)
T KOG0285|consen 185 LKLTLTGHIETVRGVAVSKRHPYLFSAGEDKQVKCWDLEYNK--VI--RHYHGHLSGVYCLDLHPTL-DVLVTGGRDSTI 259 (460)
T ss_pred EEEeecchhheeeeeeecccCceEEEecCCCeeEEEechhhh--hH--HHhccccceeEEEeccccc-eeEEecCCcceE
Confidence 345788999999999999999999999999999999997532 12 2567999999999999975 578999999999
Q ss_pred EEEECCCCeeeeeeeec-CCeeEEEECCCCCeEEEEcCCCcEEEEEcCCCeeeeeee-cCceeeEEEECCCCCEEEEEeC
Q 026765 92 RLWDARSGKCSQQAELS-GENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRK-FGYEVNEIAWNMTGEMFFLTTG 169 (233)
Q Consensus 92 ~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 169 (233)
||||+++...+..+..+ ..+..+.+.|-...+++|+.|++|++||++.++...... +...+.+++.+|....+++++.
T Consensus 260 RvWDiRtr~~V~~l~GH~~~V~~V~~~~~dpqvit~S~D~tvrlWDl~agkt~~tlt~hkksvral~lhP~e~~fASas~ 339 (460)
T KOG0285|consen 260 RVWDIRTRASVHVLSGHTNPVASVMCQPTDPQVITGSHDSTVRLWDLRAGKTMITLTHHKKSVRALCLHPKENLFASASP 339 (460)
T ss_pred EEeeecccceEEEecCCCCcceeEEeecCCCceEEecCCceEEEeeeccCceeEeeecccceeeEEecCCchhhhhccCC
Confidence 99999998877777644 456678888888889999999999999999887665543 4567899999999988888887
Q ss_pred CCeEEEEecCCceeeeEEeeecCceeEEEECCCCCEEEEeeCCCcEEEEecCCcEEEEee
Q 026765 170 NGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTF 229 (233)
Q Consensus 170 ~~~v~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~las~s~dg~v~iwd~~~~~~i~~~ 229 (233)
| .++-|+++.++.+..+.+|..-|++++.+.| .++++|+++|.+..||-+++..-+.+
T Consensus 340 d-nik~w~~p~g~f~~nlsgh~~iintl~~nsD-~v~~~G~dng~~~fwdwksg~nyQ~~ 397 (460)
T KOG0285|consen 340 D-NIKQWKLPEGEFLQNLSGHNAIINTLSVNSD-GVLVSGGDNGSIMFWDWKSGHNYQRG 397 (460)
T ss_pred c-cceeccCCccchhhccccccceeeeeeeccC-ceEEEcCCceEEEEEecCcCcccccc
Confidence 7 6899999999998889999999999999876 48889999999999999999766554
No 57
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.96 E-value=6.8e-27 Score=175.65 Aligned_cols=203 Identities=22% Similarity=0.379 Sum_probs=164.4
Q ss_pred ceeeeCccccEEEEEECcCCCEEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCCeEE
Q 026765 13 SREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVR 92 (233)
Q Consensus 13 ~~~~~~H~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~ 92 (233)
.-++.+|+..|+++.|+.+|.+||||+.+|.|+||++.... ....+......+.-+.|||. ..+|+.|+.||.+.
T Consensus 99 ~~eltgHKDSVt~~~FshdgtlLATGdmsG~v~v~~~stg~----~~~~~~~e~~dieWl~WHp~-a~illAG~~DGsvW 173 (399)
T KOG0296|consen 99 AGELTGHKDSVTCCSFSHDGTLLATGDMSGKVLVFKVSTGG----EQWKLDQEVEDIEWLKWHPR-AHILLAGSTDGSVW 173 (399)
T ss_pred eeEecCCCCceEEEEEccCceEEEecCCCccEEEEEcccCc----eEEEeecccCceEEEEeccc-ccEEEeecCCCcEE
Confidence 45778999999999999999999999999999999987532 23344445567888999996 57889999999999
Q ss_pred EEECCCCeeeeeeeecC-CeeEEEECCCCCeEEEEcCCCcEEEEEcCCCeeeeeeec-----------------------
Q 026765 93 LWDARSGKCSQQAELSG-ENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKF----------------------- 148 (233)
Q Consensus 93 iwd~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~----------------------- 148 (233)
+|.+.++...+.+..+. +..+-.|.|+|++++++..|++|++|++.+.++.+....
T Consensus 174 mw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~ 253 (399)
T KOG0296|consen 174 MWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNS 253 (399)
T ss_pred EEECCCcceeeEecCCCCCcccccccCCCceEEEEecCceEEEEecCCCceeEEecccccCcCCccccccccceeEeccC
Confidence 99998865445444433 344567999999999999999999999877665544430
Q ss_pred -------------------------------------------------------------------------CceeeEE
Q 026765 149 -------------------------------------------------------------------------GYEVNEI 155 (233)
Q Consensus 149 -------------------------------------------------------------------------~~~~~~~ 155 (233)
...|..+
T Consensus 254 e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~he~~V~~l 333 (399)
T KOG0296|consen 254 EGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLRHICEHEDGVTKL 333 (399)
T ss_pred CccEEEEccccceEEEecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccchhheeccCCCceEEE
Confidence 0011223
Q ss_pred EECCCCCEEEEEeCCCeEEEEecCCceeeeEEeeecCceeEEEECCCCCEEEEeeCCCcEEEEecC
Q 026765 156 AWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDIS 221 (233)
Q Consensus 156 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~las~s~dg~v~iwd~~ 221 (233)
.|-+ ..++++++.+|.++.||.++++....+.+|...|.+++++|+.++++|+|.|++.+||+..
T Consensus 334 ~w~~-t~~l~t~c~~g~v~~wDaRtG~l~~~y~GH~~~Il~f~ls~~~~~vvT~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 334 KWLN-TDYLLTACANGKVRQWDARTGQLKFTYTGHQMGILDFALSPQKRLVVTVSDDNTALVFEVP 398 (399)
T ss_pred EEcC-cchheeeccCceEEeeeccccceEEEEecCchheeEEEEcCCCcEEEEecCCCeEEEEecC
Confidence 3433 4577899999999999999999999999999999999999999999999999999999864
No 58
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=4.8e-28 Score=192.97 Aligned_cols=208 Identities=19% Similarity=0.298 Sum_probs=176.1
Q ss_pred cceeeeCccccEEEEEECcCCCEEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCCeE
Q 026765 12 HSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTV 91 (233)
Q Consensus 12 ~~~~~~~H~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i 91 (233)
+.+.|.--.-+|++.+|-+--+++++|+.|..||||+.++.. + ...+.+|.+.|++++.||..+. ++|++.|-+|
T Consensus 47 mVksfeV~~~PvRa~kfiaRknWiv~GsDD~~IrVfnynt~e--k--V~~FeAH~DyIR~iavHPt~P~-vLtsSDDm~i 121 (794)
T KOG0276|consen 47 MVKSFEVSEVPVRAAKFIARKNWIVTGSDDMQIRVFNYNTGE--K--VKTFEAHSDYIRSIAVHPTLPY-VLTSSDDMTI 121 (794)
T ss_pred eeeeeeecccchhhheeeeccceEEEecCCceEEEEecccce--e--eEEeeccccceeeeeecCCCCe-EEecCCccEE
Confidence 445666667789999999999999999999999999987532 3 3468899999999999999874 5699999999
Q ss_pred EEEECCCC-eeeeeeeec-CCeeEEEECCC-CCeEEEEcCCCcEEEEEcCCCeeeeeee-cCceeeEEEECCCC--CEEE
Q 026765 92 RLWDARSG-KCSQQAELS-GENINITYKPD-GTHIAVGNRDDELTILDVRKFKPIHRRK-FGYEVNEIAWNMTG--EMFF 165 (233)
Q Consensus 92 ~iwd~~~~-~~~~~~~~~-~~~~~~~~~~~-~~~l~~~~~d~~i~i~d~~~~~~~~~~~-~~~~~~~~~~~~~~--~~~~ 165 (233)
++||.+.. .|.+.++.+ +-+..++|.|. .+.+++++-|+++++|.+.+..+....+ +...++++.+-+-| .+++
T Consensus 122 KlW~we~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylI 201 (794)
T KOG0276|consen 122 KLWDWENEWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLI 201 (794)
T ss_pred EEeeccCceeeeeEEcCcceEEEEEEecCCCccceeeeeccccEEEEEcCCCCCceeeeccccCcceEEeccCCCcceEE
Confidence 99998764 466666654 34678999984 5789999999999999998877665544 45679999986544 6899
Q ss_pred EEeCCCeEEEEecCCceeeeEEeeecCceeEEEECCCCCEEEEeeCCCcEEEEecCCcE
Q 026765 166 LTTGNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEML 224 (233)
Q Consensus 166 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~las~s~dg~v~iwd~~~~~ 224 (233)
+|+.|.++++||+.+..++.++.+|...|..+.|+|.-.++++||+||+||||+..+=.
T Consensus 202 sgaDD~tiKvWDyQtk~CV~TLeGHt~Nvs~v~fhp~lpiiisgsEDGTvriWhs~Ty~ 260 (794)
T KOG0276|consen 202 SGADDLTIKVWDYQTKSCVQTLEGHTNNVSFVFFHPELPIIISGSEDGTVRIWNSKTYK 260 (794)
T ss_pred ecCCCceEEEeecchHHHHHHhhcccccceEEEecCCCcEEEEecCCccEEEecCccee
Confidence 99999999999999999999999999999999999999999999999999999977543
No 59
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=99.96 E-value=3e-29 Score=187.71 Aligned_cols=196 Identities=18% Similarity=0.310 Sum_probs=156.8
Q ss_pred eeeeCccccEEEEEECcCCCEEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCCeEEE
Q 026765 14 REYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRL 93 (233)
Q Consensus 14 ~~~~~H~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~i 93 (233)
+.+.||++.|.|+.|. ...++|||+|.+|+|||+++...- ..+-+|.+.|..+.|+. .++++++.|.++.+
T Consensus 231 ~~L~GHtGSVLCLqyd--~rviisGSSDsTvrvWDv~tge~l----~tlihHceaVLhlrf~n---g~mvtcSkDrsiaV 301 (499)
T KOG0281|consen 231 KILTGHTGSVLCLQYD--ERVIVSGSSDSTVRVWDVNTGEPL----NTLIHHCEAVLHLRFSN---GYMVTCSKDRSIAV 301 (499)
T ss_pred HhhhcCCCcEEeeecc--ceEEEecCCCceEEEEeccCCchh----hHHhhhcceeEEEEEeC---CEEEEecCCceeEE
Confidence 5678999999999985 569999999999999999864321 23568999999999963 47899999999999
Q ss_pred EECCCCee---eeeeeecCC-eeEEEECCCCCeEEEEcCCCcEEEEEcCCCeeeeeee-cCceeeEEEECCCCCEEEEEe
Q 026765 94 WDARSGKC---SQQAELSGE-NINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRK-FGYEVNEIAWNMTGEMFFLTT 168 (233)
Q Consensus 94 wd~~~~~~---~~~~~~~~~-~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 168 (233)
||+..... .+.+..+.. +..+.| +.+++++++.|.+|++|++.+.+-+.... +...+.++. ..++++++|+
T Consensus 302 Wdm~sps~it~rrVLvGHrAaVNvVdf--d~kyIVsASgDRTikvW~~st~efvRtl~gHkRGIAClQ--Yr~rlvVSGS 377 (499)
T KOG0281|consen 302 WDMASPTDITLRRVLVGHRAAVNVVDF--DDKYIVSASGDRTIKVWSTSTCEFVRTLNGHKRGIACLQ--YRDRLVVSGS 377 (499)
T ss_pred EeccCchHHHHHHHHhhhhhheeeecc--ccceEEEecCCceEEEEeccceeeehhhhcccccceehh--ccCeEEEecC
Confidence 99987642 122222222 223455 55699999999999999998876654433 233455554 4789999999
Q ss_pred CCCeEEEEecCCceeeeEEeeecCceeEEEECCCCCEEEEeeCCCcEEEEecCCcE
Q 026765 169 GNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEML 224 (233)
Q Consensus 169 ~~~~v~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~las~s~dg~v~iwd~~~~~ 224 (233)
.|.++++||...+.++..+.+|.+-|.||.|+ .+.+++|+.||+|+|||+..++
T Consensus 378 SDntIRlwdi~~G~cLRvLeGHEeLvRciRFd--~krIVSGaYDGkikvWdl~aal 431 (499)
T KOG0281|consen 378 SDNTIRLWDIECGACLRVLEGHEELVRCIRFD--NKRIVSGAYDGKIKVWDLQAAL 431 (499)
T ss_pred CCceEEEEeccccHHHHHHhchHHhhhheeec--CceeeeccccceEEEEeccccc
Confidence 99999999999999999999999999999995 5799999999999999998664
No 60
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=2.3e-27 Score=178.13 Aligned_cols=204 Identities=23% Similarity=0.358 Sum_probs=176.4
Q ss_pred cceeeeCccccEEEEEECcCCCEEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCCeE
Q 026765 12 HSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTV 91 (233)
Q Consensus 12 ~~~~~~~H~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i 91 (233)
.++...||.-.|.+++|-|-|.+++|++.|.+|+.|++.+. .+...+.+|...|.-+..+.++ .++++++.|.++
T Consensus 185 c~ks~~gh~h~vS~V~f~P~gd~ilS~srD~tik~We~~tg----~cv~t~~~h~ewvr~v~v~~DG-ti~As~s~dqtl 259 (406)
T KOG0295|consen 185 CIKSLIGHEHGVSSVFFLPLGDHILSCSRDNTIKAWECDTG----YCVKTFPGHSEWVRMVRVNQDG-TIIASCSNDQTL 259 (406)
T ss_pred HHHHhcCcccceeeEEEEecCCeeeecccccceeEEecccc----eeEEeccCchHhEEEEEecCCe-eEEEecCCCceE
Confidence 34667899999999999999999999999999999998752 3455789999999999998764 689999999999
Q ss_pred EEEECCCCeeeeeeeec-CCeeEEEECCC---------------CCeEEEEcCCCcEEEEEcCCCeeeeeee-cCceeeE
Q 026765 92 RLWDARSGKCSQQAELS-GENINITYKPD---------------GTHIAVGNRDDELTILDVRKFKPIHRRK-FGYEVNE 154 (233)
Q Consensus 92 ~iwd~~~~~~~~~~~~~-~~~~~~~~~~~---------------~~~l~~~~~d~~i~i~d~~~~~~~~~~~-~~~~~~~ 154 (233)
++|-+.+++|...+..+ ..+.+++|.|. +.++.+++.|++|++||+.++..+..+. +..-|..
T Consensus 260 ~vW~~~t~~~k~~lR~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL~tL~ghdnwVr~ 339 (406)
T KOG0295|consen 260 RVWVVATKQCKAELREHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCLFTLVGHDNWVRG 339 (406)
T ss_pred EEEEeccchhhhhhhccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEEEEEecccceeee
Confidence 99999998776655433 34455666542 2488999999999999999987776544 4556899
Q ss_pred EEECCCCCEEEEEeCCCeEEEEecCCceeeeEEeeecCceeEEEECCCCCEEEEeeCCCcEEEEec
Q 026765 155 IAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDI 220 (233)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~las~s~dg~v~iwd~ 220 (233)
++|+|-|+|+++...|+++++||+...++++.+..|..-|++++|+.+-.++++|+-|.++++|..
T Consensus 340 ~af~p~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah~hfvt~lDfh~~~p~VvTGsVdqt~KvwEc 405 (406)
T KOG0295|consen 340 VAFSPGGKYILSCADDKTLRVWDLKNLQCMKTLEAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWEC 405 (406)
T ss_pred eEEcCCCeEEEEEecCCcEEEEEeccceeeeccCCCcceeEEEecCCCCceEEeccccceeeeeec
Confidence 999999999999999999999999999999999999999999999999999999999999999964
No 61
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=99.96 E-value=1.3e-26 Score=174.19 Aligned_cols=214 Identities=18% Similarity=0.226 Sum_probs=172.1
Q ss_pred ceeeeCccccEEEEEECcCCCEEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCCeEE
Q 026765 13 SREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVR 92 (233)
Q Consensus 13 ~~~~~~H~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~ 92 (233)
..+|..|++.|.+++.+|+.+++||||.|..-.+|+..... ...++.+|++.|+++.|+.++ .+|++|.-+|.|+
T Consensus 57 ~~tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge----~~~eltgHKDSVt~~~Fshdg-tlLATGdmsG~v~ 131 (399)
T KOG0296|consen 57 LVTFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGE----FAGELTGHKDSVTCCSFSHDG-TLLATGDMSGKVL 131 (399)
T ss_pred eeehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCc----ceeEecCCCCceEEEEEccCc-eEEEecCCCccEE
Confidence 45788999999999999999999999999999999987543 345788999999999999875 6899999999999
Q ss_pred EEECCCCeeeeeeeec-CCeeEEEECCCCCeEEEEcCCCcEEEEEcCCCeeeeeee-cCceeeEEEECCCCCEEEEEeCC
Q 026765 93 LWDARSGKCSQQAELS-GENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRK-FGYEVNEIAWNMTGEMFFLTTGN 170 (233)
Q Consensus 93 iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 170 (233)
||+..++.....+... ....-+.|+|.+..++.|+.||.+.+|.+.+....+.+. +..++++=.|.|+|+.++.+..|
T Consensus 132 v~~~stg~~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw~ip~~~~~kv~~Gh~~~ct~G~f~pdGKr~~tgy~d 211 (399)
T KOG0296|consen 132 VFKVSTGGEQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMWQIPSQALCKVMSGHNSPCTCGEFIPDGKRILTGYDD 211 (399)
T ss_pred EEEcccCceEEEeecccCceEEEEecccccEEEeecCCCcEEEEECCCcceeeEecCCCCCcccccccCCCceEEEEecC
Confidence 9999998766655422 345568999999999999999999999987643322222 44567777888999999999999
Q ss_pred CeEEEEecCCceeeeEEe--------------------------------------------------------------
Q 026765 171 GTVEVLTYPSLRPLDTVV-------------------------------------------------------------- 188 (233)
Q Consensus 171 ~~v~~~~~~~~~~~~~~~-------------------------------------------------------------- 188 (233)
|++++|+..++.++..+.
T Consensus 212 gti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~ 291 (399)
T KOG0296|consen 212 GTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLTKGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVES 291 (399)
T ss_pred ceEEEEecCCCceeEEecccccCcCCccccccccceeEeccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhh
Confidence 999999977665543332
Q ss_pred ---------------------------------eecCceeEEEECCCCCEEEEeeCCCcEEEEecCCcEEEEeeecC
Q 026765 189 ---------------------------------AHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKL 232 (233)
Q Consensus 189 ---------------------------------~~~~~v~~i~~~p~~~~las~s~dg~v~iwd~~~~~~i~~~~~~ 232 (233)
.|..+|..+.|-+ ..+|++++.||+|+.||.++|.++.+|.+|
T Consensus 292 ~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R~~c~he~~V~~l~w~~-t~~l~t~c~~g~v~~wDaRtG~l~~~y~GH 367 (399)
T KOG0296|consen 292 IPSSSKLPLAACGSVDGTIAIYDLAASTLRHICEHEDGVTKLKWLN-TDYLLTACANGKVRQWDARTGQLKFTYTGH 367 (399)
T ss_pred cccccccchhhcccccceEEEEecccchhheeccCCCceEEEEEcC-cchheeeccCceEEeeeccccceEEEEecC
Confidence 1234566777777 678888888888888888888888888765
No 62
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.96 E-value=2e-27 Score=195.35 Aligned_cols=206 Identities=26% Similarity=0.404 Sum_probs=177.3
Q ss_pred ee-eeCccccEEEEEECcCCCEEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCCeEE
Q 026765 14 RE-YTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVR 92 (233)
Q Consensus 14 ~~-~~~H~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~ 92 (233)
.. +.||.+.|++++|..-+..|+||+.|+++||||..... +...+.+|...|.++...+ ..+++|+.|.+|+
T Consensus 242 ~~~l~GH~g~V~~l~~~~~~~~lvsgS~D~t~rvWd~~sg~----C~~~l~gh~stv~~~~~~~---~~~~sgs~D~tVk 314 (537)
T KOG0274|consen 242 LTRLVGHFGGVWGLAFPSGGDKLVSGSTDKTERVWDCSTGE----CTHSLQGHTSSVRCLTIDP---FLLVSGSRDNTVK 314 (537)
T ss_pred EeeccCCCCCceeEEEecCCCEEEEEecCCcEEeEecCCCc----EEEEecCCCceEEEEEccC---ceEeeccCCceEE
Confidence 44 88999999999998878999999999999999976432 3346789999999998764 4678999999999
Q ss_pred EEECCCCeeeeeee-ecCCeeEEEECCCCCeEEEEcCCCcEEEEEcCCCeeeeeee-cCceeeEEEECCCCCEEEEEeCC
Q 026765 93 LWDARSGKCSQQAE-LSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRK-FGYEVNEIAWNMTGEMFFLTTGN 170 (233)
Q Consensus 93 iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 170 (233)
+|++.++.+...+. +...+.++... +.++++|+.|++|.+||.++.+.+.... +...|.++.+... +.++.|+.|
T Consensus 315 VW~v~n~~~l~l~~~h~~~V~~v~~~--~~~lvsgs~d~~v~VW~~~~~~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~D 391 (537)
T KOG0274|consen 315 VWDVTNGACLNLLRGHTGPVNCVQLD--EPLLVSGSYDGTVKVWDPRTGKCLKSLSGHTGRVYSLIVDSE-NRLLSGSLD 391 (537)
T ss_pred EEeccCcceEEEeccccccEEEEEec--CCEEEEEecCceEEEEEhhhceeeeeecCCcceEEEEEecCc-ceEEeeeec
Confidence 99999999988877 55667777776 7799999999999999999888877654 5567888877554 889999999
Q ss_pred CeEEEEecCCc-eeeeEEeeecCceeEEEECCCCCEEEEeeCCCcEEEEecCCcEEEEeeec
Q 026765 171 GTVEVLTYPSL-RPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTK 231 (233)
Q Consensus 171 ~~v~~~~~~~~-~~~~~~~~~~~~v~~i~~~p~~~~las~s~dg~v~iwd~~~~~~i~~~~~ 231 (233)
+.+++||+++. +++..+.+|.+-|.++.+ .+++|++++.|++|++||.++++|++++.+
T Consensus 392 ~~IkvWdl~~~~~c~~tl~~h~~~v~~l~~--~~~~Lvs~~aD~~Ik~WD~~~~~~~~~~~~ 451 (537)
T KOG0274|consen 392 TTIKVWDLRTKRKCIHTLQGHTSLVSSLLL--RDNFLVSSSADGTIKLWDAEEGECLRTLEG 451 (537)
T ss_pred cceEeecCCchhhhhhhhcCCccccccccc--ccceeEeccccccEEEeecccCceeeeecc
Confidence 99999999998 899999999988866555 568999999999999999999999999876
No 63
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=2.9e-27 Score=183.36 Aligned_cols=201 Identities=22% Similarity=0.290 Sum_probs=169.7
Q ss_pred eeeeCccccEEEEEECcCC-CEEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCCeEE
Q 026765 14 REYTGHKKKVHSVAWNCTG-TKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVR 92 (233)
Q Consensus 14 ~~~~~H~~~V~~~~~~~~~-~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~ 92 (233)
+.+.+|+.+|+.+.|+|++ ..|++|+.|+.+++||++... . ..++.+|++.|.+.+|+|...++++|||+||.|+
T Consensus 104 R~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~---v-~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vr 179 (487)
T KOG0310|consen 104 RQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAY---V-QAELSGHTDYVRCGDISPANDHIVVTGSYDGKVR 179 (487)
T ss_pred HHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcE---E-EEEecCCcceeEeeccccCCCeEEEecCCCceEE
Confidence 4578999999999999976 567888999999999997532 3 5688999999999999999889999999999999
Q ss_pred EEECCCC-eeeeeeeecCCeeEEEECCCCCeEEEEcCCCcEEEEEcCCCee-eeeee-cCceeeEEEECCCCCEEEEEeC
Q 026765 93 LWDARSG-KCSQQAELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKP-IHRRK-FGYEVNEIAWNMTGEMFFLTTG 169 (233)
Q Consensus 93 iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 169 (233)
+||++.. ..+.++....++..+.+.|.|..|++++. ..+++||+-++.. +.... +...++|+.+..++..+++++-
T Consensus 180 l~DtR~~~~~v~elnhg~pVe~vl~lpsgs~iasAgG-n~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s~~~rLlS~sL 258 (487)
T KOG0310|consen 180 LWDTRSLTSRVVELNHGCPVESVLALPSGSLIASAGG-NSVKVWDLTTGGQLLTSMFNHNKTVTCLRLASDSTRLLSGSL 258 (487)
T ss_pred EEEeccCCceeEEecCCCceeeEEEcCCCCEEEEcCC-CeEEEEEecCCceehhhhhcccceEEEEEeecCCceEeeccc
Confidence 9999887 55566667777888999999999988764 4699999985443 33333 6678999999999999999999
Q ss_pred CCeEEEEecCCceeeeEEeeecCceeEEEECCCCCEEEEeeCCCcEEEEec
Q 026765 170 NGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDI 220 (233)
Q Consensus 170 ~~~v~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~las~s~dg~v~iwd~ 220 (233)
|+.+++|+..+.+.+..+. ..++|.+++.+|+++.++.|-.||.+-+=+.
T Consensus 259 D~~VKVfd~t~~Kvv~s~~-~~~pvLsiavs~dd~t~viGmsnGlv~~rr~ 308 (487)
T KOG0310|consen 259 DRHVKVFDTTNYKVVHSWK-YPGPVLSIAVSPDDQTVVIGMSNGLVSIRRR 308 (487)
T ss_pred ccceEEEEccceEEEEeee-cccceeeEEecCCCceEEEecccceeeeehh
Confidence 9999999988777766543 6789999999999999999999998876643
No 64
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=9.6e-28 Score=186.01 Aligned_cols=211 Identities=19% Similarity=0.332 Sum_probs=175.4
Q ss_pred eeeeCccccEEEEEECcCCCEEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCCeEEE
Q 026765 14 REYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRL 93 (233)
Q Consensus 14 ~~~~~H~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~i 93 (233)
+.+......|+++.|-.||++||.|+..|.|+|+|..+ +.....+.+|+.+|..+.|+|.+..++++|+.|+.+++
T Consensus 62 k~~srFk~~v~s~~fR~DG~LlaaGD~sG~V~vfD~k~----r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~ 137 (487)
T KOG0310|consen 62 KTFSRFKDVVYSVDFRSDGRLLAAGDESGHVKVFDMKS----RVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKY 137 (487)
T ss_pred hhHHhhccceeEEEeecCCeEEEccCCcCcEEEecccc----HHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEE
Confidence 44667788999999999999999999999999999643 22233577999999999999999999999999999999
Q ss_pred EECCCCeeeeeeee-cCCeeEEEECCC-CCeEEEEcCCCcEEEEEcCCC-eeeeeeecCceeeEEEECCCCCEEEEEeCC
Q 026765 94 WDARSGKCSQQAEL-SGENINITYKPD-GTHIAVGNRDDELTILDVRKF-KPIHRRKFGYEVNEIAWNMTGEMFFLTTGN 170 (233)
Q Consensus 94 wd~~~~~~~~~~~~-~~~~~~~~~~~~-~~~l~~~~~d~~i~i~d~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (233)
||+.+......+.. ..-+.+.+++|. +..+++|+.||.|++||++.. ..+..+.++.++..+.+=|.|..+++++++
T Consensus 138 ~d~s~a~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v~elnhg~pVe~vl~lpsgs~iasAgGn 217 (487)
T KOG0310|consen 138 WDLSTAYVQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRVVELNHGCPVESVLALPSGSLIASAGGN 217 (487)
T ss_pred EEcCCcEEEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCceeEEecCCCceeeEEEcCCCCEEEEcCCC
Confidence 99988764222222 234667888885 457889999999999999987 677778899999999999999888888766
Q ss_pred CeEEEEecCCcee-eeEEeeecCceeEEEECCCCCEEEEeeCCCcEEEEecCCcEEEEee
Q 026765 171 GTVEVLTYPSLRP-LDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTF 229 (233)
Q Consensus 171 ~~v~~~~~~~~~~-~~~~~~~~~~v~~i~~~p~~~~las~s~dg~v~iwd~~~~~~i~~~ 229 (233)
.+++||+..+.. +..+..|...|+|+++.-++..|.+||-|+.|+|||..+-+.++.+
T Consensus 218 -~vkVWDl~~G~qll~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kvv~s~ 276 (487)
T KOG0310|consen 218 -SVKVWDLTTGGQLLTSMFNHNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNYKVVHSW 276 (487)
T ss_pred -eEEEEEecCCceehhhhhcccceEEEEEeecCCceEeecccccceEEEEccceEEEEee
Confidence 799999985544 4444459999999999999999999999999999998877776654
No 65
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.96 E-value=1.9e-27 Score=172.22 Aligned_cols=210 Identities=23% Similarity=0.369 Sum_probs=169.2
Q ss_pred eeeeCccccEEEEEECcCCCEEEEEeCCCCEEEEecccCCCC-------ce-----------------------------
Q 026765 14 REYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHG-------KV----------------------------- 57 (233)
Q Consensus 14 ~~~~~H~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~-------~~----------------------------- 57 (233)
-+|.||++.|+|++.+.+.+.|+||++|.++++||++...+. .+
T Consensus 46 Gty~GHtGavW~~Did~~s~~liTGSAD~t~kLWDv~tGk~la~~k~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~f 125 (327)
T KOG0643|consen 46 GTYDGHTGAVWCCDIDWDSKHLITGSADQTAKLWDVETGKQLATWKTNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVF 125 (327)
T ss_pred eeecCCCceEEEEEecCCcceeeeccccceeEEEEcCCCcEEEEeecCCeeEEEeeccCCcEEEEEehhhcCcceEEEEE
Confidence 478999999999999999999999999999999998653210 00
Q ss_pred -------------eeEEEecCcCcEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCee-eeeee-ecCCeeEEEECCCCCe
Q 026765 58 -------------KDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKC-SQQAE-LSGENINITYKPDGTH 122 (233)
Q Consensus 58 -------------~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~-~~~~~-~~~~~~~~~~~~~~~~ 122 (233)
....++.+...++.+-|.|-+ +.|++|..||.|.+||++++.. +.... +...+..++++|+..+
T Consensus 126 di~~~~~~~~s~ep~~kI~t~~skit~a~Wg~l~-~~ii~Ghe~G~is~~da~~g~~~v~s~~~h~~~Ind~q~s~d~T~ 204 (327)
T KOG0643|consen 126 DIRDDSSDIDSEEPYLKIPTPDSKITSALWGPLG-ETIIAGHEDGSISIYDARTGKELVDSDEEHSSKINDLQFSRDRTY 204 (327)
T ss_pred EccCChhhhcccCceEEecCCccceeeeeecccC-CEEEEecCCCcEEEEEcccCceeeechhhhccccccccccCCcce
Confidence 011234566778888999875 6788999999999999999753 33323 3345667999999999
Q ss_pred EEEEcCCCcEEEEEcCCCeeeeeeecCceeeEEEECCCCCEEEEEeCCCeEEEEecC--------------CceeeeEEe
Q 026765 123 IAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYP--------------SLRPLDTVV 188 (233)
Q Consensus 123 l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--------------~~~~~~~~~ 188 (233)
+++++.|.+-++||+++.+.+..+....++++.+++|..+.++++++...--+=... .-+.+..+.
T Consensus 205 FiT~s~Dttakl~D~~tl~v~Kty~te~PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvk 284 (327)
T KOG0643|consen 205 FITGSKDTTAKLVDVRTLEVLKTYTTERPVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVK 284 (327)
T ss_pred EEecccCccceeeeccceeeEEEeeecccccceecccccceEEecCCceeeeeeeecccccchhhhHHHHHHHHHhcccc
Confidence 999999999999999999999999989999999999999888888765443332211 123566778
Q ss_pred eecCceeEEEECCCCCEEEEeeCCCcEEEEecCCcE
Q 026765 189 AHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEML 224 (233)
Q Consensus 189 ~~~~~v~~i~~~p~~~~las~s~dg~v~iwd~~~~~ 224 (233)
+|-++|++++|+|+|+..++|++||.|+|.-.++..
T Consensus 285 GHFGPINsvAfhPdGksYsSGGEDG~VR~h~Fd~~Y 320 (327)
T KOG0643|consen 285 GHFGPINSVAFHPDGKSYSSGGEDGYVRLHHFDSNY 320 (327)
T ss_pred ccccCcceeEECCCCcccccCCCCceEEEEEeccch
Confidence 999999999999999999999999999998776543
No 66
>PTZ00420 coronin; Provisional
Probab=99.96 E-value=3.7e-26 Score=188.53 Aligned_cols=188 Identities=18% Similarity=0.273 Sum_probs=150.2
Q ss_pred EeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCee--------eeeee-ec
Q 026765 38 GSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKC--------SQQAE-LS 108 (233)
Q Consensus 38 ~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~--------~~~~~-~~ 108 (233)
|+.++.|++|+.... .....+.+|...|.+++|+|..+.+|+||+.|+.|+|||+.++.. ...+. +.
T Consensus 50 GG~~gvI~L~~~~r~----~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~ 125 (568)
T PTZ00420 50 GGLIGAIRLENQMRK----PPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHK 125 (568)
T ss_pred CCceeEEEeeecCCC----ceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCC
Confidence 667889999987532 133467899999999999998678999999999999999976421 11222 23
Q ss_pred CCeeEEEECCCCCeE-EEEcCCCcEEEEEcCCCeeeeeeecCceeeEEEECCCCCEEEEEeCCCeEEEEecCCceeeeEE
Q 026765 109 GENINITYKPDGTHI-AVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTV 187 (233)
Q Consensus 109 ~~~~~~~~~~~~~~l-~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 187 (233)
..+.+++|+|++..+ ++++.|+.+++||+++.+......+...+.+++|+++|+++++++.|+.+++||.++++.+..+
T Consensus 126 ~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~~~~~V~SlswspdG~lLat~s~D~~IrIwD~Rsg~~i~tl 205 (568)
T PTZ00420 126 KKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQINMPKKLSSLKWNIKGNLLSGTCVGKHMHIIDPRKQEIASSF 205 (568)
T ss_pred CcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEEEecCCcEEEEEECCCCCEEEEEecCCEEEEEECCCCcEEEEE
Confidence 456789999998765 6889999999999998877666656667999999999999999999999999999999998889
Q ss_pred eeecCceeE-----EEECCCCCEEEEeeCCC----cEEEEecCC-cEEEEee
Q 026765 188 VAHTAGCYC-----IAIDPMGRYFAVGSADS----LVSLWDISE-MLCVRTF 229 (233)
Q Consensus 188 ~~~~~~v~~-----i~~~p~~~~las~s~dg----~v~iwd~~~-~~~i~~~ 229 (233)
.+|.+.+.+ ..|++++.+|++++.|+ .|+|||++. ..+++++
T Consensus 206 ~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~~ 257 (568)
T PTZ00420 206 HIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVTM 257 (568)
T ss_pred ecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEEE
Confidence 999876433 34568999999888764 799999984 5566554
No 67
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=1.3e-26 Score=171.27 Aligned_cols=203 Identities=20% Similarity=0.355 Sum_probs=168.4
Q ss_pred eeeeCccccEEEEEECcCCC--EEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCCeE
Q 026765 14 REYTGHKKKVHSVAWNCTGT--KLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTV 91 (233)
Q Consensus 14 ~~~~~H~~~V~~~~~~~~~~--~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i 91 (233)
..+..|.+.|+++.|.+.-. .|+||+.||.|.+|++.. ....-.+++|...|+.++.+|.+ ++.++-+.|+.+
T Consensus 77 g~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~----W~~~~slK~H~~~Vt~lsiHPS~-KLALsVg~D~~l 151 (362)
T KOG0294|consen 77 GILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGS----WELLKSLKAHKGQVTDLSIHPSG-KLALSVGGDQVL 151 (362)
T ss_pred cceeccccceEEEEecCCcchhheeeecCCCcEEEEEcCC----eEEeeeecccccccceeEecCCC-ceEEEEcCCcee
Confidence 34568999999999998765 999999999999999854 33444688999999999999975 688899999999
Q ss_pred EEEECCCCeeeeeeeecCCeeEEEECCCCCeEEEEcCCCcEEEEEcCCCeeeeeeecCceeeEEEECCCCCEEEEEeCCC
Q 026765 92 RLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNG 171 (233)
Q Consensus 92 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (233)
++||+-.|+......+......+.|+|.|.+++++..+ .|-+|.+.+............+.++.| -++..+++|..|+
T Consensus 152 r~WNLV~Gr~a~v~~L~~~at~v~w~~~Gd~F~v~~~~-~i~i~q~d~A~v~~~i~~~~r~l~~~~-l~~~~L~vG~d~~ 229 (362)
T KOG0294|consen 152 RTWNLVRGRVAFVLNLKNKATLVSWSPQGDHFVVSGRN-KIDIYQLDNASVFREIENPKRILCATF-LDGSELLVGGDNE 229 (362)
T ss_pred eeehhhcCccceeeccCCcceeeEEcCCCCEEEEEecc-EEEEEecccHhHhhhhhccccceeeee-cCCceEEEecCCc
Confidence 99999999877777777777779999999999888876 588888876544433333333445544 3678899999999
Q ss_pred eEEEEecCCceeeeEEeeecCceeEEEE--CCCCCEEEEeeCCCcEEEEecCCc
Q 026765 172 TVEVLTYPSLRPLDTVVAHTAGCYCIAI--DPMGRYFAVGSADSLVSLWDISEM 223 (233)
Q Consensus 172 ~v~~~~~~~~~~~~~~~~~~~~v~~i~~--~p~~~~las~s~dg~v~iwd~~~~ 223 (233)
.+.+||.++..+...+.+|..+|..+.+ +|++.+|+++|.||.|+|||++..
T Consensus 230 ~i~~~D~ds~~~~~~~~AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~~ 283 (362)
T KOG0294|consen 230 WISLKDTDSDTPLTEFLAHENRVKDIASYTNPEHEYLVTASSDGFIKVWDIDME 283 (362)
T ss_pred eEEEeccCCCccceeeecchhheeeeEEEecCCceEEEEeccCceEEEEEcccc
Confidence 9999999888888999999999999883 678899999999999999999865
No 68
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=5.2e-28 Score=173.03 Aligned_cols=207 Identities=22% Similarity=0.357 Sum_probs=167.4
Q ss_pred eeeeCccccEEEEEECcCCCEEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEE-cCCCCCEEEEEeCCCeEE
Q 026765 14 REYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCW-DPKHADLIATASGDKTVR 92 (233)
Q Consensus 14 ~~~~~H~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~-~~~~~~~l~sg~~d~~i~ 92 (233)
+.-++|.+.|..+..+-.|++|||||+|++|||+.+....+. ....++.||.++|..++| +|.-+.+|+|++.||.|.
T Consensus 5 ~idt~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s-~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVI 83 (299)
T KOG1332|consen 5 TIDTQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQS-KLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVI 83 (299)
T ss_pred ehhhhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCc-eeeeEecCCCCCeeEEeecccccCcEeeEeecCceEE
Confidence 345689999999999999999999999999999999765432 345689999999999999 677778999999999999
Q ss_pred EEECCCCeeeeeee---ecCCeeEEEECCC--CCeEEEEcCCCcEEEEEcCCC-eee-e--eeecCceeeEEEECCC---
Q 026765 93 LWDARSGKCSQQAE---LSGENINITYKPD--GTHIAVGNRDDELTILDVRKF-KPI-H--RRKFGYEVNEIAWNMT--- 160 (233)
Q Consensus 93 iwd~~~~~~~~~~~---~~~~~~~~~~~~~--~~~l~~~~~d~~i~i~d~~~~-~~~-~--~~~~~~~~~~~~~~~~--- 160 (233)
||.-.+++..+... +...+.+++|.|. |-.|++++.||.|.+++.+.. ... . ...+...+++++|.|.
T Consensus 84 iWke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~ 163 (299)
T KOG1332|consen 84 IWKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAP 163 (299)
T ss_pred EEecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCC
Confidence 99998886544332 3455677899886 567889999999999987654 211 1 1224556889999886
Q ss_pred C-----------CEEEEEeCCCeEEEEecCCc--eeeeEEeeecCceeEEEECCCC----CEEEEeeCCCcEEEEecC
Q 026765 161 G-----------EMFFLTTGNGTVEVLTYPSL--RPLDTVVAHTAGCYCIAIDPMG----RYFAVGSADSLVSLWDIS 221 (233)
Q Consensus 161 ~-----------~~~~~~~~~~~v~~~~~~~~--~~~~~~~~~~~~v~~i~~~p~~----~~las~s~dg~v~iwd~~ 221 (233)
| +.+++|+.|..+++|.+... +.-.++.+|...|..++|.|.- .+||++|.||+|.||-..
T Consensus 164 g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~ 241 (299)
T KOG1332|consen 164 GSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKD 241 (299)
T ss_pred ccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEec
Confidence 4 56899999999999998764 3445588999999999999965 379999999999999876
No 69
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.96 E-value=7.5e-26 Score=160.80 Aligned_cols=207 Identities=20% Similarity=0.313 Sum_probs=164.0
Q ss_pred eeeeCccccEEEEEECcCCCEEEEEeCCCCEEEEecccCCC-CceeeEEEecCcCcEEEEEEcCC---CCCEEEEEeC-C
Q 026765 14 REYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGH-GKVKDIELRGHADSVDQLCWDPK---HADLIATASG-D 88 (233)
Q Consensus 14 ~~~~~H~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~-~~~~~~~~~~h~~~v~~~~~~~~---~~~~l~sg~~-d 88 (233)
+.-..|++.|+|.+|+|.|++++||+.|++||+-..+.... ..-..+++..|.+.|..++|..+ ++.+|++++. |
T Consensus 83 kr~khhkgsiyc~~ws~~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagd 162 (350)
T KOG0641|consen 83 KRNKHHKGSIYCTAWSPCGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGD 162 (350)
T ss_pred eeccccCccEEEEEecCccCeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCc
Confidence 34457999999999999999999999999999976653322 12245678889999999999532 3456666643 5
Q ss_pred CeEEEEECCCCeeeeeeeec-CCeeEEEECCCCCeEEEEcCCCcEEEEEcCCCeeeeeeec--------CceeeEEEECC
Q 026765 89 KTVRLWDARSGKCSQQAELS-GENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKF--------GYEVNEIAWNM 159 (233)
Q Consensus 89 ~~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~--------~~~~~~~~~~~ 159 (233)
..|.+-|-..++..+....+ +.+.. -++=++-.+++|+.|.+|++||++-...+..... ...+..++..|
T Consensus 163 c~iy~tdc~~g~~~~a~sghtghila-lyswn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdp 241 (350)
T KOG0641|consen 163 CKIYITDCGRGQGFHALSGHTGHILA-LYSWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDP 241 (350)
T ss_pred ceEEEeecCCCCcceeecCCcccEEE-EEEecCcEEEccCCCceEEEEeeeccceeeeccCcccCCCcccceeEEEEECC
Confidence 55666677777655544433 33333 2344678899999999999999986655443321 24688899999
Q ss_pred CCCEEEEEeCCCeEEEEecCCceeeeEEeeecCceeEEEECCCCCEEEEeeCCCcEEEEecC
Q 026765 160 TGEMFFLTTGNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDIS 221 (233)
Q Consensus 160 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~las~s~dg~v~iwd~~ 221 (233)
.|+++++|..|....+||.+-+++++.+..|...|.|+.|+|...||.++|.|.+|++=|+.
T Consensus 242 sgrll~sg~~dssc~lydirg~r~iq~f~phsadir~vrfsp~a~yllt~syd~~ikltdlq 303 (350)
T KOG0641|consen 242 SGRLLASGHADSSCMLYDIRGGRMIQRFHPHSADIRCVRFSPGAHYLLTCSYDMKIKLTDLQ 303 (350)
T ss_pred CcceeeeccCCCceEEEEeeCCceeeeeCCCccceeEEEeCCCceEEEEecccceEEEeecc
Confidence 99999999999999999999999999999999999999999999999999999999999986
No 70
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.95 E-value=3.1e-27 Score=184.61 Aligned_cols=219 Identities=20% Similarity=0.346 Sum_probs=167.2
Q ss_pred cceeeeCccccEEEEEECcCCCEEEEEeCCCCEEEEecccCC-------------C------------Cceee-------
Q 026765 12 HSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHG-------------H------------GKVKD------- 59 (233)
Q Consensus 12 ~~~~~~~H~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~-------------~------------~~~~~------- 59 (233)
|-..+.+|+..|.++++.|.|.+|+|||.|-+|++||+..-. . ..+..
T Consensus 159 hEi~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg~~iLvvsg~aqa 238 (641)
T KOG0772|consen 159 HEIQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTGDQILVVSGSAQA 238 (641)
T ss_pred ceEeccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCCCeEEEEecCcce
Confidence 445688999999999999999999999999999999963100 0 00000
Q ss_pred -----------------------EEEecCcCcEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeee-eeee---c---C
Q 026765 60 -----------------------IELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQ-QAEL---S---G 109 (233)
Q Consensus 60 -----------------------~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~-~~~~---~---~ 109 (233)
...+||...+++.+|+|.....+++++.|+++||||+...+... .+.. . -
T Consensus 239 kl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~qVik~k~~~g~Rv 318 (641)
T KOG0772|consen 239 KLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQVIKTKPAGGKRV 318 (641)
T ss_pred eEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhheeEEeeccCCCccc
Confidence 01368999999999999998899999999999999997764322 1111 1 1
Q ss_pred CeeEEEECCCCCeEEEEcCCCcEEEEEcCCCee--eeeee--c--CceeeEEEECCCCCEEEEEeCCCeEEEEecCCc-e
Q 026765 110 ENINITYKPDGTHIAVGNRDDELTILDVRKFKP--IHRRK--F--GYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSL-R 182 (233)
Q Consensus 110 ~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~--~~~~~--~--~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~ 182 (233)
.+..++|+|++++||+|..||.|.+|+.++... ...++ + +..++++.|+++|+++++-+.|+++++||++.. +
T Consensus 319 ~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~kk 398 (641)
T KOG0772|consen 319 PVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFKK 398 (641)
T ss_pred CceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeecccccc
Confidence 345799999999999999999999999865432 22222 2 347999999999999999999999999999865 3
Q ss_pred eeeEEeee--cCceeEEEECCCCCEEEEeeC------CCcEEEEecCCcEEEEeee
Q 026765 183 PLDTVVAH--TAGCYCIAIDPMGRYFAVGSA------DSLVSLWDISEMLCVRTFT 230 (233)
Q Consensus 183 ~~~~~~~~--~~~v~~i~~~p~~~~las~s~------dg~v~iwd~~~~~~i~~~~ 230 (233)
++....+- ..+-+.++|||+.++|++|.. .|++.+||..+.+.++++.
T Consensus 399 pL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~ 454 (641)
T KOG0772|consen 399 PLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKID 454 (641)
T ss_pred chhhhcCCCccCCCCccccCCCceEEEecccccCCCCCceEEEEeccceeeEEEec
Confidence 44443332 223457899999999999873 4679999999888887753
No 71
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.95 E-value=1.4e-26 Score=178.05 Aligned_cols=209 Identities=25% Similarity=0.439 Sum_probs=167.8
Q ss_pred eeeeCccccEEEEEECcCC-CEEEEEeCCCCEEEEecccCCCC---ceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCC
Q 026765 14 REYTGHKKKVHSVAWNCTG-TKLASGSVDQTARVWHIEPHGHG---KVKDIELRGHADSVDQLCWDPKHADLIATASGDK 89 (233)
Q Consensus 14 ~~~~~H~~~V~~~~~~~~~-~~l~s~~~D~~v~vW~~~~~~~~---~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~ 89 (233)
-.+.||.+.-+.|+|++.. -.|+||+.|++|.+||++..... ......+.+|.+.|..++|++....++++++.|+
T Consensus 171 l~L~gH~~eg~glsWn~~~~g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~ 250 (422)
T KOG0264|consen 171 LRLKGHEKEGYGLSWNRQQEGTLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDG 250 (422)
T ss_pred eEEEeecccccccccccccceeEeeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCC
Confidence 4788999989999999875 47899999999999999764432 2234468899999999999999999999999999
Q ss_pred eEEEEECCC--Ceeeeeee-ecCCeeEEEECCC-CCeEEEEcCCCcEEEEEcCCCee-eee-eecCceeeEEEECCCCCE
Q 026765 90 TVRLWDARS--GKCSQQAE-LSGENINITYKPD-GTHIAVGNRDDELTILDVRKFKP-IHR-RKFGYEVNEIAWNMTGEM 163 (233)
Q Consensus 90 ~i~iwd~~~--~~~~~~~~-~~~~~~~~~~~~~-~~~l~~~~~d~~i~i~d~~~~~~-~~~-~~~~~~~~~~~~~~~~~~ 163 (233)
.+.|||+|+ .++..... ..+++.+++|+|- +..||+|+.|+++.+||+|+.+. ++. ..+..++..+.|+|....
T Consensus 251 ~L~iwD~R~~~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~et 330 (422)
T KOG0264|consen 251 KLMIWDTRSNTSKPSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNET 330 (422)
T ss_pred eEEEEEcCCCCCCCcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCc
Confidence 999999995 33333332 3467788999995 45678899999999999997543 333 335678999999998765
Q ss_pred E-EEEeCCCeEEEEecCC--------------ceeeeEEeeecCceeEEEECCCCCE-EEEeeCCCcEEEEecCC
Q 026765 164 F-FLTTGNGTVEVLTYPS--------------LRPLDTVVAHTAGCYCIAIDPMGRY-FAVGSADSLVSLWDISE 222 (233)
Q Consensus 164 ~-~~~~~~~~v~~~~~~~--------------~~~~~~~~~~~~~v~~i~~~p~~~~-las~s~dg~v~iwd~~~ 222 (233)
+ ++++.|+.+.+||+.. .+.+..-.||...|..++|+|+..+ +++.++|+.+.||.+..
T Consensus 331 vLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s~ 405 (422)
T KOG0264|consen 331 VLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMAE 405 (422)
T ss_pred eeEecccCCcEEEEeccccccccChhhhccCCcceeEEecCcccccccccCCCCCCeEEEEecCCceEEEeeccc
Confidence 4 5567899999999842 2334556689999999999999886 78899999999999984
No 72
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=1.3e-26 Score=184.77 Aligned_cols=210 Identities=20% Similarity=0.253 Sum_probs=180.5
Q ss_pred cceeeeCccccEEEEEECcCCCEEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCCeE
Q 026765 12 HSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTV 91 (233)
Q Consensus 12 ~~~~~~~H~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i 91 (233)
..++|..|.+-|+|++.+|...+++|+|.|-+||+|+.+. .+.+...+.||+..|-+++|+|.+.+.++|++-|++|
T Consensus 89 kV~~FeAH~DyIR~iavHPt~P~vLtsSDDm~iKlW~we~---~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTV 165 (794)
T KOG0276|consen 89 KVKTFEAHSDYIRSIAVHPTLPYVLTSSDDMTIKLWDWEN---EWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTV 165 (794)
T ss_pred eeEEeeccccceeeeeecCCCCeEEecCCccEEEEeeccC---ceeeeeEEcCcceEEEEEEecCCCccceeeeeccccE
Confidence 3468899999999999999999999999999999999864 4556678999999999999999999999999999999
Q ss_pred EEEECCCCeeeeeeeec-CCeeEEEECC--CCCeEEEEcCCCcEEEEEcCCCeeeeeee-cCceeeEEEECCCCCEEEEE
Q 026765 92 RLWDARSGKCSQQAELS-GENINITYKP--DGTHIAVGNRDDELTILDVRKFKPIHRRK-FGYEVNEIAWNMTGEMFFLT 167 (233)
Q Consensus 92 ~iwd~~~~~~~~~~~~~-~~~~~~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 167 (233)
+||.+....+..++..+ ..+.++.+-+ |..++++|+.|..+++||..+-..+.... +...+..+.|+|.-..+++|
T Consensus 166 KVWslgs~~~nfTl~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~Nvs~v~fhp~lpiiisg 245 (794)
T KOG0276|consen 166 KVWSLGSPHPNFTLEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGHTNNVSFVFFHPELPIIISG 245 (794)
T ss_pred EEEEcCCCCCceeeeccccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhhcccccceEEEecCCCcEEEEe
Confidence 99999988887777755 3456788865 44699999999999999988766665544 55679999999999999999
Q ss_pred eCCCeEEEEecCCceeeeEEeeecCceeEEEECCCCCEEEEeeCCCcEEEEecCCcEE
Q 026765 168 TGNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLC 225 (233)
Q Consensus 168 ~~~~~v~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~las~s~dg~v~iwd~~~~~~ 225 (233)
++||++++|+..+.+...++.-..+.|+||+-.+.++.++.|..+|.|.| ++-..++
T Consensus 246 sEDGTvriWhs~Ty~lE~tLn~gleRvW~I~~~k~~~~i~vG~Deg~i~v-~lgreeP 302 (794)
T KOG0276|consen 246 SEDGTVRIWNSKTYKLEKTLNYGLERVWCIAAHKGDGKIAVGFDEGSVTV-KLGREEP 302 (794)
T ss_pred cCCccEEEecCcceehhhhhhcCCceEEEEeecCCCCeEEEeccCCcEEE-EccCCCC
Confidence 99999999999998888888888899999999999999999988887654 3433333
No 73
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=1.6e-26 Score=171.29 Aligned_cols=207 Identities=17% Similarity=0.223 Sum_probs=156.6
Q ss_pred eeeeCccccEEEEEECcCCCEEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCCeEEE
Q 026765 14 REYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRL 93 (233)
Q Consensus 14 ~~~~~H~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~i 93 (233)
..+.||.+.|++++|+.+|+.|||++.|++||||++..........++..-.-+.-+.+.|.|+...++++.-....+++
T Consensus 80 ~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~l~v 159 (420)
T KOG2096|consen 80 SVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNKLCV 159 (420)
T ss_pred hhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCCEEEE
Confidence 46789999999999999999999999999999999865332211111111122356778999998888888888889999
Q ss_pred EECCCCe---eeeeee----------ecCCeeEEEECCCCCeEEEEcCCCcEEEEEcCCCeeeeeeecC-ceeeEEEECC
Q 026765 94 WDARSGK---CSQQAE----------LSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFG-YEVNEIAWNM 159 (233)
Q Consensus 94 wd~~~~~---~~~~~~----------~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~-~~~~~~~~~~ 159 (233)
|.+...+ ....+. ....++++-...++.+|++++.|..|.+|+++ ++.+..+..+ ......+.+|
T Consensus 160 yk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lk-Gq~L~~idtnq~~n~~aavSP 238 (420)
T KOG2096|consen 160 YKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSASLDTKICLWDLK-GQLLQSIDTNQSSNYDAAVSP 238 (420)
T ss_pred EEeeecccCCCCcccccccccccchhcccceEEEeecCCceEEEEecCCCcEEEEecC-CceeeeeccccccccceeeCC
Confidence 9874322 111111 11234556667788999999999999999998 5555544433 2345678899
Q ss_pred CCCEEEEEeCCCeEEEEec---CCc-----eeeeEEeeecCceeEEEECCCCCEEEEeeCCCcEEEEecC
Q 026765 160 TGEMFFLTTGNGTVEVLTY---PSL-----RPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDIS 221 (233)
Q Consensus 160 ~~~~~~~~~~~~~v~~~~~---~~~-----~~~~~~~~~~~~v~~i~~~p~~~~las~s~dg~v~iwd~~ 221 (233)
+|+++++++-.-.+++|.. +.+ .....+.+|.+.|...+|||+.+.+++.|.||+++|||.+
T Consensus 239 ~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtd 308 (420)
T KOG2096|consen 239 DGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTD 308 (420)
T ss_pred CCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeecc
Confidence 9999999988888999964 222 2345678999999999999999999999999999999986
No 74
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.95 E-value=4.7e-26 Score=167.80 Aligned_cols=206 Identities=19% Similarity=0.357 Sum_probs=168.1
Q ss_pred CccccEEEEEECcCCCEEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCCeEEEEECC
Q 026765 18 GHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDAR 97 (233)
Q Consensus 18 ~H~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~iwd~~ 97 (233)
.|.+++++++|.+ ...+++|+.||.||++|++.... ..+..|..+|.++.+.+.. ..+++|++|++|++||.+
T Consensus 52 ~~~~plL~c~F~d-~~~~~~G~~dg~vr~~Dln~~~~-----~~igth~~~i~ci~~~~~~-~~vIsgsWD~~ik~wD~R 124 (323)
T KOG1036|consen 52 KHGAPLLDCAFAD-ESTIVTGGLDGQVRRYDLNTGNE-----DQIGTHDEGIRCIEYSYEV-GCVISGSWDKTIKFWDPR 124 (323)
T ss_pred ecCCceeeeeccC-CceEEEeccCceEEEEEecCCcc-----eeeccCCCceEEEEeeccC-CeEEEcccCccEEEEecc
Confidence 5899999999976 67888999999999999986432 2466799999999999764 567899999999999999
Q ss_pred CCeeeeeeeecCCeeEEEECCCCCeEEEEcCCCcEEEEEcCCCeeee---eeecCceeeEEEECCCCCEEEEEeCCCeEE
Q 026765 98 SGKCSQQAELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIH---RRKFGYEVNEIAWNMTGEMFFLTTGNGTVE 174 (233)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 174 (233)
.............+.++.. .++.|++|+.+..+.+||+++..... ...+...+.++++-|++.-+++++-+|.+.
T Consensus 125 ~~~~~~~~d~~kkVy~~~v--~g~~LvVg~~~r~v~iyDLRn~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVa 202 (323)
T KOG1036|consen 125 NKVVVGTFDQGKKVYCMDV--SGNRLVVGTSDRKVLIYDLRNLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVA 202 (323)
T ss_pred ccccccccccCceEEEEec--cCCEEEEeecCceEEEEEcccccchhhhccccceeEEEEEEEecCCCceEEEeecceEE
Confidence 8655555555556666554 57799999999999999999865443 233467889999999999999999999999
Q ss_pred EEecCCc----eeeeEEeeecC---------ceeEEEECCCCCEEEEeeCCCcEEEEecCCcEEEEeeecC
Q 026765 175 VLTYPSL----RPLDTVVAHTA---------GCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKL 232 (233)
Q Consensus 175 ~~~~~~~----~~~~~~~~~~~---------~v~~i~~~p~~~~las~s~dg~v~iwd~~~~~~i~~~~~~ 232 (233)
+=.+++. +.-..|..|.. +|++|+|+|-...||||+.||.|.+||+...+.+++|.+.
T Consensus 203 vE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKrl~q~~~~ 273 (323)
T KOG1036|consen 203 VEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNRKRLKQLAKY 273 (323)
T ss_pred EEccCCchHHhhhceeEEeeecccCCceEEEEeceeEeccccceEEecCCCceEEEccCcchhhhhhccCC
Confidence 8777655 23344666642 5899999999999999999999999999999888888764
No 75
>PTZ00421 coronin; Provisional
Probab=99.95 E-value=2.1e-25 Score=182.88 Aligned_cols=218 Identities=16% Similarity=0.204 Sum_probs=167.7
Q ss_pred CCCCccceee--eCccccEEEEEECcCCCEEEEEeCCCCEEEEecccCC-------CCce--eeEEEecCcCcEEEEEEc
Q 026765 7 PFKNLHSREY--TGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHG-------HGKV--KDIELRGHADSVDQLCWD 75 (233)
Q Consensus 7 ~~~~~~~~~~--~~H~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~-------~~~~--~~~~~~~h~~~v~~~~~~ 75 (233)
+|+.+..+.. ..|-..|+....++++..+++++.+..+..|+..... .++. ....+.+|.+.|.+++|+
T Consensus 5 k~rh~~g~~~k~~~~~~~i~~~~~~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fs 84 (493)
T PTZ00421 5 RFRHTQGVPARPDRHFLNVTPSTALWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFN 84 (493)
T ss_pred cccccccccCCcccceeccccccccCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEc
Confidence 4666655443 2466778888888898888999988888889753211 0110 012367999999999999
Q ss_pred CCCCCEEEEEeCCCeEEEEECCCCee-------eeeeee-cCCeeEEEECCCC-CeEEEEcCCCcEEEEEcCCCeeeeee
Q 026765 76 PKHADLIATASGDKTVRLWDARSGKC-------SQQAEL-SGENINITYKPDG-THIAVGNRDDELTILDVRKFKPIHRR 146 (233)
Q Consensus 76 ~~~~~~l~sg~~d~~i~iwd~~~~~~-------~~~~~~-~~~~~~~~~~~~~-~~l~~~~~d~~i~i~d~~~~~~~~~~ 146 (233)
|.++.+|++|+.|++|++||+.++.. ...+.. ...+.+++|+|++ ++|++++.|+.|++||+++.+.....
T Consensus 85 P~d~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~~~l 164 (493)
T PTZ00421 85 PFDPQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAVEVI 164 (493)
T ss_pred CCCCCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEEEEE
Confidence 95567899999999999999976531 222322 3456779999985 68999999999999999987766554
Q ss_pred e-cCceeeEEEECCCCCEEEEEeCCCeEEEEecCCceeeeEEeeecCce-eEEEECCCCCEEEEee----CCCcEEEEec
Q 026765 147 K-FGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAHTAGC-YCIAIDPMGRYFAVGS----ADSLVSLWDI 220 (233)
Q Consensus 147 ~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v-~~i~~~p~~~~las~s----~dg~v~iwd~ 220 (233)
. +...+.+++|+++++++++++.|+.+++||.++++.+..+.+|...+ ..+.|.|++..+++++ .|+.|++||+
T Consensus 165 ~~h~~~V~sla~spdG~lLatgs~Dg~IrIwD~rsg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDl 244 (493)
T PTZ00421 165 KCHSDQITSLEWNLDGSLLCTTSKDKKLNIIDPRDGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDT 244 (493)
T ss_pred cCCCCceEEEEEECCCCEEEEecCCCEEEEEECCCCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeC
Confidence 4 45579999999999999999999999999999998888888887653 4678898887776654 5899999999
Q ss_pred CCcE
Q 026765 221 SEML 224 (233)
Q Consensus 221 ~~~~ 224 (233)
++..
T Consensus 245 r~~~ 248 (493)
T PTZ00421 245 RKMA 248 (493)
T ss_pred CCCC
Confidence 8653
No 76
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.95 E-value=5.2e-26 Score=190.88 Aligned_cols=211 Identities=21% Similarity=0.335 Sum_probs=173.1
Q ss_pred eeeCccccEEEEEECcCCCEEEEEeCCCCEEEEecccCC------C--------CceeeEEEecCcCcEEEEEEcCCCCC
Q 026765 15 EYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHG------H--------GKVKDIELRGHADSVDQLCWDPKHAD 80 (233)
Q Consensus 15 ~~~~H~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~------~--------~~~~~~~~~~h~~~v~~~~~~~~~~~ 80 (233)
+...|.+.|+|+.|+|||++||+||.|+.|.||+..... . .......+.+|...|.+++|+|++ .
T Consensus 64 ~m~~h~~sv~CVR~S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~-~ 142 (942)
T KOG0973|consen 64 TMDDHDGSVNCVRFSPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDD-S 142 (942)
T ss_pred eeccccCceeEEEECCCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCc-c
Confidence 456899999999999999999999999999999976300 0 012344688999999999999975 6
Q ss_pred EEEEEeCCCeEEEEECCCCeeeeeeeec-CCeeEEEECCCCCeEEEEcCCCcEEEEEcCCCeeeeeeec-------Ccee
Q 026765 81 LIATASGDKTVRLWDARSGKCSQQAELS-GENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKF-------GYEV 152 (233)
Q Consensus 81 ~l~sg~~d~~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~-------~~~~ 152 (233)
+++|++.|++|.|||.++.++...+..+ +.+..+.|+|-|+++++-+.|+++++|++..+...+.+.. ....
T Consensus 143 ~lvS~s~DnsViiwn~~tF~~~~vl~~H~s~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~~~~~~T~f 222 (942)
T KOG0973|consen 143 LLVSVSLDNSVIIWNAKTFELLKVLRGHQSLVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFEESPLTTFF 222 (942)
T ss_pred EEEEecccceEEEEccccceeeeeeecccccccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchhhCCCccee
Confidence 8999999999999999998777666544 5667799999999999999999999999877655544332 2236
Q ss_pred eEEEECCCCCEEEEEe----CCCeEEEEecCCceeeeEEeeecCceeEEEECCC-----CC------------EEEEeeC
Q 026765 153 NEIAWNMTGEMFFLTT----GNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPM-----GR------------YFAVGSA 211 (233)
Q Consensus 153 ~~~~~~~~~~~~~~~~----~~~~v~~~~~~~~~~~~~~~~~~~~v~~i~~~p~-----~~------------~las~s~ 211 (233)
..+.|+|||+++++.. ....+.|++-.+.+.-..+.+|.+++.+++|+|. .+ .+|+||.
T Consensus 223 ~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSq 302 (942)
T KOG0973|consen 223 LRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQ 302 (942)
T ss_pred eecccCCCcCeecchhhccCCcceeEEEecCCceeeeeeecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecC
Confidence 7789999999998764 3467888888888888899999999999999872 12 5799999
Q ss_pred CCcEEEEecCCcEEE
Q 026765 212 DSLVSLWDISEMLCV 226 (233)
Q Consensus 212 dg~v~iwd~~~~~~i 226 (233)
|++|-||+.....++
T Consensus 303 DrSlSVW~T~~~RPl 317 (942)
T KOG0973|consen 303 DRSLSVWNTALPRPL 317 (942)
T ss_pred CccEEEEecCCCCch
Confidence 999999998776654
No 77
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.95 E-value=3.7e-26 Score=175.18 Aligned_cols=206 Identities=18% Similarity=0.302 Sum_probs=176.6
Q ss_pred cccEEEEEECcCCCEEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCCeEEEEECCCC
Q 026765 20 KKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSG 99 (233)
Q Consensus 20 ~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~iwd~~~~ 99 (233)
...++++...|..+.++||+.|+.+.++|..... ....++||...|+.+.++|+. ..+++++.|..|+||.....
T Consensus 219 ~pgi~ald~~~s~~~ilTGG~d~~av~~d~~s~q----~l~~~~Gh~kki~~v~~~~~~-~~v~~aSad~~i~vws~~~~ 293 (506)
T KOG0289|consen 219 TPGITALDIIPSSSKILTGGEDKTAVLFDKPSNQ----ILATLKGHTKKITSVKFHKDL-DTVITASADEIIRVWSVPLS 293 (506)
T ss_pred CCCeeEEeecCCCCcceecCCCCceEEEecchhh----hhhhccCcceEEEEEEeccch-hheeecCCcceEEeeccccc
Confidence 4568888888888899999999999999975421 223589999999999999974 56789999999999998766
Q ss_pred eeeeeee-ecCCeeEEEECCCCCeEEEEcCCCcEEEEEcCCCeeeeeeec---CceeeEEEECCCCCEEEEEeCCCeEEE
Q 026765 100 KCSQQAE-LSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKF---GYEVNEIAWNMTGEMFFLTTGNGTVEV 175 (233)
Q Consensus 100 ~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~v~~ 175 (233)
.+..... +..++..+..+|.|.|+++++.|+...+.|++++..+..... ...+++.+|||||..+.+|..|+.+++
T Consensus 294 s~~~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vki 373 (506)
T KOG0289|consen 294 SEPTSSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKI 373 (506)
T ss_pred cCccccccccccceeeeeccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCCCceEEE
Confidence 5444333 345667789999999999999999999999998877655443 356899999999999999999999999
Q ss_pred EecCCceeeeEEeeecCceeEEEECCCCCEEEEeeCCCcEEEEecCCcEEEEeee
Q 026765 176 LTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFT 230 (233)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~las~s~dg~v~iwd~~~~~~i~~~~ 230 (233)
||+.+..-...|.+|.++|..|+|+-+|-|||++++|+.|++||++..+..++|+
T Consensus 374 wdlks~~~~a~Fpght~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n~kt~~ 428 (506)
T KOG0289|consen 374 WDLKSQTNVAKFPGHTGPVKAISFSENGYWLATAADDGSVKLWDLRKLKNFKTIQ 428 (506)
T ss_pred EEcCCccccccCCCCCCceeEEEeccCceEEEEEecCCeEEEEEehhhcccceee
Confidence 9999888888899999999999999999999999999999999999888777765
No 78
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.95 E-value=1.3e-25 Score=162.24 Aligned_cols=210 Identities=20% Similarity=0.289 Sum_probs=177.2
Q ss_pred eeeCccccEEEEEECcC-CCEEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCCeEEE
Q 026765 15 EYTGHKKKVHSVAWNCT-GTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRL 93 (233)
Q Consensus 15 ~~~~H~~~V~~~~~~~~-~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~i 93 (233)
.+.+|.+.|-.++|+|. .+++++++.|++|++||.... ..+..++.+ ..-.-+.|+|++. .++.++.|..|.+
T Consensus 59 ~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd~r~~--k~~~~i~~~---~eni~i~wsp~g~-~~~~~~kdD~it~ 132 (313)
T KOG1407|consen 59 VYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWDIRSG--KCTARIETK---GENINITWSPDGE-YIAVGNKDDRITF 132 (313)
T ss_pred cccCCCcchhhheeCCCCCcceEEecCCceEEEEEeccC--cEEEEeecc---CcceEEEEcCCCC-EEEEecCcccEEE
Confidence 56799999999999985 578999999999999998642 223333322 2334578999865 6678999999999
Q ss_pred EECCCCeeeeeeeecCCeeEEEECCCCCeEEEEcCCCcEEEEEcCCCeeeeeee-cCceeeEEEECCCCCEEEEEeCCCe
Q 026765 94 WDARSGKCSQQAELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRK-FGYEVNEIAWNMTGEMFFLTTGNGT 172 (233)
Q Consensus 94 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (233)
.|.++.+.....++......+.|+-+++.++.....|++.|..-...+++..++ +.....++.|+|+|+++++|+.|-.
T Consensus 133 id~r~~~~~~~~~~~~e~ne~~w~~~nd~Fflt~GlG~v~ILsypsLkpv~si~AH~snCicI~f~p~GryfA~GsADAl 212 (313)
T KOG1407|consen 133 IDARTYKIVNEEQFKFEVNEISWNNSNDLFFLTNGLGCVEILSYPSLKPVQSIKAHPSNCICIEFDPDGRYFATGSADAL 212 (313)
T ss_pred EEecccceeehhcccceeeeeeecCCCCEEEEecCCceEEEEeccccccccccccCCcceEEEEECCCCceEeeccccce
Confidence 999998887777777777788998888888888888999999988888887766 4556778899999999999999999
Q ss_pred EEEEecCCceeeeEEeeecCceeEEEECCCCCEEEEeeCCCcEEEEecCCcEEEEeee
Q 026765 173 VEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFT 230 (233)
Q Consensus 173 v~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~las~s~dg~v~iwd~~~~~~i~~~~ 230 (233)
+.+||.+..-+.+.+..+.-+|..++||.+|++||+||+|..|-|=++++|..+.+++
T Consensus 213 vSLWD~~ELiC~R~isRldwpVRTlSFS~dg~~lASaSEDh~IDIA~vetGd~~~eI~ 270 (313)
T KOG1407|consen 213 VSLWDVDELICERCISRLDWPVRTLSFSHDGRMLASASEDHFIDIAEVETGDRVWEIP 270 (313)
T ss_pred eeccChhHhhhheeeccccCceEEEEeccCcceeeccCccceEEeEecccCCeEEEee
Confidence 9999999988889999999999999999999999999999999999999998777654
No 79
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=7.7e-26 Score=180.59 Aligned_cols=205 Identities=24% Similarity=0.438 Sum_probs=175.5
Q ss_pred cceeeeC-ccccEEEEEECcCCCEEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCCe
Q 026765 12 HSREYTG-HKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKT 90 (233)
Q Consensus 12 ~~~~~~~-H~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~ 90 (233)
.++++.+ |...|-+++|+ +..+.+|+.|+.|..+|+..... ... .+.+|...|..++|++++ ..++||+.|+.
T Consensus 251 ~~~~~~~~h~~rvg~laW~--~~~lssGsr~~~I~~~dvR~~~~--~~~-~~~~H~qeVCgLkws~d~-~~lASGgnDN~ 324 (484)
T KOG0305|consen 251 KTRTLRGSHASRVGSLAWN--SSVLSSGSRDGKILNHDVRISQH--VVS-TLQGHRQEVCGLKWSPDG-NQLASGGNDNV 324 (484)
T ss_pred ccccccCCcCceeEEEecc--CceEEEecCCCcEEEEEEecchh--hhh-hhhcccceeeeeEECCCC-CeeccCCCccc
Confidence 4456777 99999999998 78899999999999999975321 112 377899999999999985 68899999999
Q ss_pred EEEEECCCCeeeeeee-ecCCeeEEEECCC-CCeEEEEc--CCCcEEEEEcCCCeeeeeeecCceeeEEEECCCCCEEEE
Q 026765 91 VRLWDARSGKCSQQAE-LSGENINITYKPD-GTHIAVGN--RDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFL 166 (233)
Q Consensus 91 i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~-~~~l~~~~--~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (233)
+.|||.........+. +...+..++|+|- ...||+|+ .|+.|++||..++..+.....+..|..+.|++..+.+++
T Consensus 325 ~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~vdtgsQVcsL~Wsk~~kEi~s 404 (484)
T KOG0305|consen 325 VFIWDGLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDSVDTGSQVCSLIWSKKYKELLS 404 (484)
T ss_pred eEeccCCCccccEEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEecccccCCceeeEEEcCCCCEEEE
Confidence 9999996666555443 4466778999994 55677765 589999999999999988888999999999999988887
Q ss_pred Ee--CCCeEEEEecCCceeeeEEeeecCceeEEEECCCCCEEEEeeCCCcEEEEecCC
Q 026765 167 TT--GNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISE 222 (233)
Q Consensus 167 ~~--~~~~v~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~las~s~dg~v~iwd~~~ 222 (233)
+. .++.+.+|++.+.+.+..+.+|...|..++++|+|..+++|+.|.++++|++-.
T Consensus 405 thG~s~n~i~lw~~ps~~~~~~l~gH~~RVl~la~SPdg~~i~t~a~DETlrfw~~f~ 462 (484)
T KOG0305|consen 405 THGYSENQITLWKYPSMKLVAELLGHTSRVLYLALSPDGETIVTGAADETLRFWNLFD 462 (484)
T ss_pred ecCCCCCcEEEEeccccceeeeecCCcceeEEEEECCCCCEEEEecccCcEEeccccC
Confidence 65 467999999999999999999999999999999999999999999999999865
No 80
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.95 E-value=3.9e-27 Score=176.95 Aligned_cols=203 Identities=20% Similarity=0.354 Sum_probs=166.2
Q ss_pred eeeCccccEEEEEECcCC-CEEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCCeEEE
Q 026765 15 EYTGHKKKVHSVAWNCTG-TKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRL 93 (233)
Q Consensus 15 ~~~~H~~~V~~~~~~~~~-~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~i 93 (233)
.+.||...|.|++=+|.. ..+|||+.||.|+|||+.... +...+.+|.+.|..+++.. ..++++++|++|+.
T Consensus 61 ~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~----~~~~f~AH~G~V~Gi~v~~---~~~~tvgdDKtvK~ 133 (433)
T KOG0268|consen 61 SLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRE----CIRTFKAHEGLVRGICVTQ---TSFFTVGDDKTVKQ 133 (433)
T ss_pred hccccccccchhhcCcchhhhhhccccCceEEEEehhhhh----hhheeecccCceeeEEecc---cceEEecCCcceee
Confidence 457999999999999987 789999999999999997532 3446889999999999975 35679999999999
Q ss_pred EECCCCe---------------------------eeeee-----------eec-CCeeEEEECCCC-CeEEEEcCCCcEE
Q 026765 94 WDARSGK---------------------------CSQQA-----------ELS-GENINITYKPDG-THIAVGNRDDELT 133 (233)
Q Consensus 94 wd~~~~~---------------------------~~~~~-----------~~~-~~~~~~~~~~~~-~~l~~~~~d~~i~ 133 (233)
|.+.... .+..+ ... ....++.|+|-. ..|+++++|+.|.
T Consensus 134 wk~~~~p~~tilg~s~~~gIdh~~~~~~FaTcGe~i~IWD~~R~~Pv~smswG~Dti~svkfNpvETsILas~~sDrsIv 213 (433)
T KOG0268|consen 134 WKIDGPPLHTILGKSVYLGIDHHRKNSVFATCGEQIDIWDEQRDNPVSSMSWGADSISSVKFNPVETSILASCASDRSIV 213 (433)
T ss_pred eeccCCcceeeeccccccccccccccccccccCceeeecccccCCccceeecCCCceeEEecCCCcchheeeeccCCceE
Confidence 9743210 00000 000 112357777754 4567788999999
Q ss_pred EEEcCCCeeeeeeecCceeeEEEECCCCCEEEEEeCCCeEEEEecCC-ceeeeEEeeecCceeEEEECCCCCEEEEeeCC
Q 026765 134 ILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPS-LRPLDTVVAHTAGCYCIAIDPMGRYFAVGSAD 212 (233)
Q Consensus 134 i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~~~~v~~i~~~p~~~~las~s~d 212 (233)
+||++...+++.......-+.++|+|..-.++++.+|..++.+|.+. .+++....+|.+.|.+++|||.|+-+++||.|
T Consensus 214 LyD~R~~~Pl~KVi~~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG~EfvsgsyD 293 (433)
T KOG0268|consen 214 LYDLRQASPLKKVILTMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTGQEFVSGSYD 293 (433)
T ss_pred EEecccCCccceeeeeccccceecCccccceeeccccccceehhhhhhcccchhhcccceeEEEeccCCCcchhcccccc
Confidence 99999999998888888899999999888899999999999999875 35777788999999999999999999999999
Q ss_pred CcEEEEecCCcE
Q 026765 213 SLVSLWDISEML 224 (233)
Q Consensus 213 g~v~iwd~~~~~ 224 (233)
.+|+||.++.+.
T Consensus 294 ksIRIf~~~~~~ 305 (433)
T KOG0268|consen 294 KSIRIFPVNHGH 305 (433)
T ss_pred ceEEEeecCCCc
Confidence 999999998774
No 81
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.95 E-value=1.7e-26 Score=175.92 Aligned_cols=197 Identities=20% Similarity=0.364 Sum_probs=166.1
Q ss_pred eeeeCccccEEEEEECcCCCEEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCCeEEE
Q 026765 14 REYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRL 93 (233)
Q Consensus 14 ~~~~~H~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~i 93 (233)
.+|+||++.|+++.|......+++|+.|.+||.||+..... ... .++ ...+.+++.. ...++||-.|+.|++
T Consensus 255 ~TLsGHtdkVt~ak~~~~~~~vVsgs~DRtiK~WDl~k~~C--~kt-~l~--~S~cnDI~~~---~~~~~SgH~DkkvRf 326 (459)
T KOG0288|consen 255 HTLSGHTDKVTAAKFKLSHSRVVSGSADRTIKLWDLQKAYC--SKT-VLP--GSQCNDIVCS---ISDVISGHFDKKVRF 326 (459)
T ss_pred hhhcccccceeeehhhccccceeeccccchhhhhhhhhhhe--ecc-ccc--cccccceEec---ceeeeecccccceEE
Confidence 57899999999999998888899999999999999964221 111 122 2345555554 346789999999999
Q ss_pred EECCCCeeeeeeeecCCeeEEEECCCCCeEEEEcCCCcEEEEEcCCCeeeeeee-----cCceeeEEEECCCCCEEEEEe
Q 026765 94 WDARSGKCSQQAELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRK-----FGYEVNEIAWNMTGEMFFLTT 168 (233)
Q Consensus 94 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~ 168 (233)
||++...+.......+.+.++..++++..+.+++.|..+.+.|+++.+..+.+. ..+.++.+.|+|++.|+++|+
T Consensus 327 wD~Rs~~~~~sv~~gg~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS 406 (459)
T KOG0288|consen 327 WDIRSADKTRSVPLGGRVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGS 406 (459)
T ss_pred EeccCCceeeEeecCcceeeEeeccCCeEEeeecCCCceeeeecccccEEEEeeccccccccccceeEECCCCceeeecc
Confidence 999999999998888999999999999999999999999999999877665443 345688999999999999999
Q ss_pred CCCeEEEEecCCceeeeEEeeecC--ceeEEEECCCCCEEEEeeCCCcEEEE
Q 026765 169 GNGTVEVLTYPSLRPLDTVVAHTA--GCYCIAIDPMGRYFAVGSADSLVSLW 218 (233)
Q Consensus 169 ~~~~v~~~~~~~~~~~~~~~~~~~--~v~~i~~~p~~~~las~s~dg~v~iw 218 (233)
.||.+++|+..+++..+.+..... .|++++|+|.|.+|++++.++.+++|
T Consensus 407 ~dgsv~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Llsadk~~~v~lW 458 (459)
T KOG0288|consen 407 ADGSVYIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLSADKQKAVTLW 458 (459)
T ss_pred CCCcEEEEEccCceEEEEeccCCCCcceEEEEEcCCCchhhcccCCcceEec
Confidence 999999999998887777665443 59999999999999999999999999
No 82
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.95 E-value=6.7e-27 Score=173.97 Aligned_cols=224 Identities=19% Similarity=0.291 Sum_probs=172.2
Q ss_pred CCCccceee-eCccccEEEEEECcCCCEEEEEeCCCCEEEEecccCCCCc----eeeEEEecCcCcEEEEEEcCCCCCEE
Q 026765 8 FKNLHSREY-TGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGK----VKDIELRGHADSVDQLCWDPKHADLI 82 (233)
Q Consensus 8 ~~~~~~~~~-~~H~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~~----~~~~~~~~h~~~v~~~~~~~~~~~~l 82 (233)
|+++..+.. .|.+.-+-|..|+|||++|+|||.||-|-||+..+....+ ...-.+--+.++|.|++|+.+ +.++
T Consensus 200 ~Pt~l~r~IKFg~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRD-sEMl 278 (508)
T KOG0275|consen 200 YPTQLARSIKFGQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRD-SEML 278 (508)
T ss_pred chHHhhhheecccccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeeccc-HHHh
Confidence 444444333 3567778899999999999999999999999986432111 011234568899999999976 5789
Q ss_pred EEEeCCCeEEEEECCCCeeeeeee--ecCCeeEEEECCCCCeEEEEcCCCcEEEEEcCCCeeeeeee-cCceeeEEEECC
Q 026765 83 ATASGDKTVRLWDARSGKCSQQAE--LSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRK-FGYEVNEIAWNM 159 (233)
Q Consensus 83 ~sg~~d~~i~iwd~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~-~~~~~~~~~~~~ 159 (233)
++|+.||.|++|.+++|.|.+.+. ....+.++.|+.|+..+++++.|..+++--+.+++.+.... +..-++...|++
T Consensus 279 AsGsqDGkIKvWri~tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvRiHGlKSGK~LKEfrGHsSyvn~a~ft~ 358 (508)
T KOG0275|consen 279 ASGSQDGKIKVWRIETGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVRIHGLKSGKCLKEFRGHSSYVNEATFTD 358 (508)
T ss_pred hccCcCCcEEEEEEecchHHHHhhhhhccCeeEEEEccCcchhhcccccceEEEeccccchhHHHhcCccccccceEEcC
Confidence 999999999999999999988775 34567889999999999999999999999988887776543 455689999999
Q ss_pred CCCEEEEEeCCCeEEEEecCCceeeeEEeee--c---------------------------------------------C
Q 026765 160 TGEMFFLTTGNGTVEVLTYPSLRPLDTVVAH--T---------------------------------------------A 192 (233)
Q Consensus 160 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~--~---------------------------------------------~ 192 (233)
+|..+++++.||++++|+..+.++..++..- . +
T Consensus 359 dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~qGQvVrsfsSGkREgG 438 (508)
T KOG0275|consen 359 DGHHIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQGQVVRSFSSGKREGG 438 (508)
T ss_pred CCCeEEEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEcCCCeEEEEeccceEEeeeccCCccCC
Confidence 9999999999999999998765544333211 1 1
Q ss_pred ceeEEEECCCCCEEEEeeCCCcEEEEecCCcEEEEeeecC
Q 026765 193 GCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKL 232 (233)
Q Consensus 193 ~v~~i~~~p~~~~las~s~dg~v~iwd~~~~~~i~~~~~~ 232 (233)
.-.+...+|.|.++.+.++|+.++-|...+|..-+++..+
T Consensus 439 dFi~~~lSpkGewiYcigED~vlYCF~~~sG~LE~tl~Vh 478 (508)
T KOG0275|consen 439 DFINAILSPKGEWIYCIGEDGVLYCFSVLSGKLERTLPVH 478 (508)
T ss_pred ceEEEEecCCCcEEEEEccCcEEEEEEeecCceeeeeecc
Confidence 1224457777888877888888888887777766666544
No 83
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.95 E-value=1.3e-25 Score=182.29 Aligned_cols=213 Identities=18% Similarity=0.278 Sum_probs=174.8
Q ss_pred eeeeCccccEEEEEECcCCCEEEEEeCCCCEEEEeccc-----CCCCceee---EEEecCcCcEEEEEEcCCCCCEEEEE
Q 026765 14 REYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEP-----HGHGKVKD---IELRGHADSVDQLCWDPKHADLIATA 85 (233)
Q Consensus 14 ~~~~~H~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~-----~~~~~~~~---~~~~~h~~~v~~~~~~~~~~~~l~sg 85 (233)
.+..+|.+.|+.++.+||++.++|||.|++|++|+..- ..+.+... ...-.-.+.|.+++++|++ ++|+.+
T Consensus 448 Eti~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdg-k~LaVs 526 (888)
T KOG0306|consen 448 ETIRAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDG-KLLAVS 526 (888)
T ss_pred hhhhccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCC-cEEEEE
Confidence 45568999999999999999999999999999999742 11111100 0111235689999999985 688999
Q ss_pred eCCCeEEEEECCCCeeeeeeeec-CCeeEEEECCCCCeEEEEcCCCcEEEEEcCCCeeeee-eecCceeeEEEECCCCCE
Q 026765 86 SGDKTVRLWDARSGKCSQQAELS-GENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHR-RKFGYEVNEIAWNMTGEM 163 (233)
Q Consensus 86 ~~d~~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 163 (233)
--|.+++||-+.+-+.--.+..+ -++.++..+||++.+++|+.|..+++|-+.=+..... ..+...+.++.|-|....
T Consensus 527 LLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFGDCHKS~fAHdDSvm~V~F~P~~~~ 606 (888)
T KOG0306|consen 527 LLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHKSFFAHDDSVMSVQFLPKTHL 606 (888)
T ss_pred eccCeEEEEEecceeeeeeecccccceeEEeccCCcCeEEeccCCCceEEeccccchhhhhhhcccCceeEEEEccccee
Confidence 99999999999886654444433 4678999999999999999999999998865554433 234457899999999999
Q ss_pred EEEEeCCCeEEEEecCCceeeeEEeeecCceeEEEECCCCCEEEEeeCCCcEEEEecCCcEEEE
Q 026765 164 FFLTTGNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVR 227 (233)
Q Consensus 164 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~las~s~dg~v~iwd~~~~~~i~ 227 (233)
+.+++.|+.++.||....+.++.+.+|...|+|++.+|+|.+++++|.|..|++|...+-..+.
T Consensus 607 FFt~gKD~kvKqWDg~kFe~iq~L~~H~~ev~cLav~~~G~~vvs~shD~sIRlwE~tde~~~l 670 (888)
T KOG0306|consen 607 FFTCGKDGKVKQWDGEKFEEIQKLDGHHSEVWCLAVSPNGSFVVSSSHDKSIRLWERTDEILIL 670 (888)
T ss_pred EEEecCcceEEeechhhhhhheeeccchheeeeeEEcCCCCeEEeccCCceeEeeeccCcceee
Confidence 9999999999999999999999999999999999999999999999999999999987644443
No 84
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=7.1e-25 Score=162.13 Aligned_cols=205 Identities=19% Similarity=0.291 Sum_probs=158.6
Q ss_pred CCccceeeeCccccEEEEEECcCCCEEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCC
Q 026765 9 KNLHSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGD 88 (233)
Q Consensus 9 ~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d 88 (233)
.+.+.+.|.||...|+.|+.+|-++.++|+|.|++||+||+........ + +...-..++|+|+| -++|.|...
T Consensus 89 dNkylRYF~GH~~~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~--l----~~~~~pi~AfDp~G-LifA~~~~~ 161 (311)
T KOG1446|consen 89 DNKYLRYFPGHKKRVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGL--L----NLSGRPIAAFDPEG-LIFALANGS 161 (311)
T ss_pred cCceEEEcCCCCceEEEEEecCCCCeEEecccCCeEEeeEecCCCCceE--E----ecCCCcceeECCCC-cEEEEecCC
Confidence 5667789999999999999999999999999999999999974332211 1 22233456899975 566777766
Q ss_pred CeEEEEECCCCe--eeeeeeec----CCeeEEEECCCCCeEEEEcCCCcEEEEEcCCCeeeeeeecCc----eeeEEEEC
Q 026765 89 KTVRLWDARSGK--CSQQAELS----GENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGY----EVNEIAWN 158 (233)
Q Consensus 89 ~~i~iwd~~~~~--~~~~~~~~----~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~----~~~~~~~~ 158 (233)
..|++||++.-. +-..+... .+...+.|+|||++|+.+...+.+.+.|.-.+.......... -.....|+
T Consensus 162 ~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~~~tfs~~~~~~~~~~~a~ft 241 (311)
T KOG1446|consen 162 ELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTVKSTFSGYPNAGNLPLSATFT 241 (311)
T ss_pred CeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcEeeeEeeccCCCCcceeEEEC
Confidence 699999998642 22333322 234569999999999999999999999987776555444321 12467899
Q ss_pred CCCCEEEEEeCCCeEEEEecCCceeeeEEee-ecCceeEEEECCCCCEEEEeeCCCcEEEEecCC
Q 026765 159 MTGEMFFLTTGNGTVEVLTYPSLRPLDTVVA-HTAGCYCIAIDPMGRYFAVGSADSLVSLWDISE 222 (233)
Q Consensus 159 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~-~~~~v~~i~~~p~~~~las~s~dg~v~iwd~~~ 222 (233)
|+++++++++.||++.+|+.+++.....+.+ +..++.|+.|+|.-.+++++ +..+.+|=...
T Consensus 242 Pds~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~~~~~~~~~~fnP~~~mf~sa--~s~l~fw~p~~ 304 (311)
T KOG1446|consen 242 PDSKFVLSGSDDGTIHVWNLETGKKVAVLRGPNGGPVSCVRFNPRYAMFVSA--SSNLVFWLPDE 304 (311)
T ss_pred CCCcEEEEecCCCcEEEEEcCCCcEeeEecCCCCCCccccccCCceeeeeec--CceEEEEeccc
Confidence 9999999999999999999999999998888 78899999999976666655 46688886553
No 85
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.94 E-value=5.9e-25 Score=168.65 Aligned_cols=203 Identities=21% Similarity=0.333 Sum_probs=170.9
Q ss_pred ceeeeCccccEEEEEECcCCCEEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCCeEE
Q 026765 13 SREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVR 92 (233)
Q Consensus 13 ~~~~~~H~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~ 92 (233)
..+|.||+..|+.+.|+|+...+++++.|..|+||.+.... .......|..+|+.+..+|.+ .+|++++.|++..
T Consensus 254 l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i~vws~~~~s----~~~~~~~h~~~V~~ls~h~tg-eYllsAs~d~~w~ 328 (506)
T KOG0289|consen 254 LATLKGHTKKITSVKFHKDLDTVITASADEIIRVWSVPLSS----EPTSSRPHEEPVTGLSLHPTG-EYLLSASNDGTWA 328 (506)
T ss_pred hhhccCcceEEEEEEeccchhheeecCCcceEEeecccccc----CccccccccccceeeeeccCC-cEEEEecCCceEE
Confidence 46789999999999999999999999999999999985432 223456899999999999986 5778999999999
Q ss_pred EEECCCCeeeeeeeec---CCeeEEEECCCCCeEEEEcCCCcEEEEEcCCCeeeeeee-cCceeeEEEECCCCCEEEEEe
Q 026765 93 LWDARSGKCSQQAELS---GENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRK-FGYEVNEIAWNMTGEMFFLTT 168 (233)
Q Consensus 93 iwd~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 168 (233)
+.|++++.+....... -...+.+|+|||..+.+|..|+.+++||+.....+.... +..+|..++|+.+|-++++++
T Consensus 329 Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~~~~a~Fpght~~vk~i~FsENGY~Lat~a 408 (506)
T KOG0289|consen 329 FSDISSGSQLTVVSDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQTNVAKFPGHTGPVKAISFSENGYWLATAA 408 (506)
T ss_pred EEEccCCcEEEEEeeccccceeEEeeEcCCceEEeccCCCceEEEEEcCCccccccCCCCCCceeEEEeccCceEEEEEe
Confidence 9999999876554443 224578999999999999999999999998766554433 456899999999999999999
Q ss_pred CCCeEEEEecCCceeeeEEeeec-CceeEEEECCCCCEEEEeeCCCcEEEEec
Q 026765 169 GNGTVEVLTYPSLRPLDTVVAHT-AGCYCIAIDPMGRYFAVGSADSLVSLWDI 220 (233)
Q Consensus 169 ~~~~v~~~~~~~~~~~~~~~~~~-~~v~~i~~~p~~~~las~s~dg~v~iwd~ 220 (233)
.|+.|++||++..+-++++.... .+|.++.|++.|++|++++.|=.|++++-
T Consensus 409 dd~~V~lwDLRKl~n~kt~~l~~~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k 461 (506)
T KOG0289|consen 409 DDGSVKLWDLRKLKNFKTIQLDEKKEVNSLSFDQSGTYLGIAGSDLQVYICKK 461 (506)
T ss_pred cCCeEEEEEehhhcccceeeccccccceeEEEcCCCCeEEeecceeEEEEEec
Confidence 99999999999888777766433 47999999999999999988877777763
No 86
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.94 E-value=1.7e-24 Score=159.71 Aligned_cols=206 Identities=21% Similarity=0.401 Sum_probs=155.4
Q ss_pred eeCccccEEEEEECcCCCEEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEE-cCCCCCEEEEEeCCCeEEEE
Q 026765 16 YTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCW-DPKHADLIATASGDKTVRLW 94 (233)
Q Consensus 16 ~~~H~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~-~~~~~~~l~sg~~d~~i~iw 94 (233)
-.+|.+-|+++.|++.|.++|||+.|++|+|||.+............+.|.+.|-.+.| +|.-+..+++++.|++++||
T Consensus 9 ~s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iW 88 (361)
T KOG2445|consen 9 DSGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIW 88 (361)
T ss_pred ccCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeee
Confidence 35899999999999999999999999999999975444334455578899999999999 66777899999999999999
Q ss_pred ECCCC-------eeeeeee---ecCCeeEEEECCC--CCeEEEEcCCCcEEEEEcCC------Ceeeeeee--------c
Q 026765 95 DARSG-------KCSQQAE---LSGENINITYKPD--GTHIAVGNRDDELTILDVRK------FKPIHRRK--------F 148 (233)
Q Consensus 95 d~~~~-------~~~~~~~---~~~~~~~~~~~~~--~~~l~~~~~d~~i~i~d~~~------~~~~~~~~--------~ 148 (233)
.-... +...... -.+.+..+.|.|. |-.+++++.||.++||+.-. ....+.++ .
T Consensus 89 EE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~ 168 (361)
T KOG2445|consen 89 EEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKN 168 (361)
T ss_pred eecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCcccc
Confidence 75321 1111111 2345678999885 67889999999999998532 22223222 2
Q ss_pred CceeeEEEECCC---CCEEEEEeCC-----CeEEEEecCC----ceeeeEEeeecCceeEEEECCCC----CEEEEeeCC
Q 026765 149 GYEVNEIAWNMT---GEMFFLTTGN-----GTVEVLTYPS----LRPLDTVVAHTAGCYCIAIDPMG----RYFAVGSAD 212 (233)
Q Consensus 149 ~~~~~~~~~~~~---~~~~~~~~~~-----~~v~~~~~~~----~~~~~~~~~~~~~v~~i~~~p~~----~~las~s~d 212 (233)
..+..++.|++. ..+|++|+.+ +.+.||.... ...+.++.+|+.+|+.|+|.|+- ..||+|+.|
T Consensus 169 ~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kD 248 (361)
T KOG2445|consen 169 KQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATKD 248 (361)
T ss_pred cCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEEeecC
Confidence 345678899864 3567777655 5788887643 23556677999999999999964 369999999
Q ss_pred CcEEEEecCC
Q 026765 213 SLVSLWDISE 222 (233)
Q Consensus 213 g~v~iwd~~~ 222 (233)
| |+||++..
T Consensus 249 g-v~I~~v~~ 257 (361)
T KOG2445|consen 249 G-VRIFKVKV 257 (361)
T ss_pred c-EEEEEEee
Confidence 9 99999984
No 87
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.94 E-value=2e-25 Score=181.24 Aligned_cols=220 Identities=19% Similarity=0.319 Sum_probs=182.6
Q ss_pred ccceeeeCccccEEEEEECcCCCEEEEEeCCCCEEEEecccCCC---------------------------CceeeE---
Q 026765 11 LHSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGH---------------------------GKVKDI--- 60 (233)
Q Consensus 11 ~~~~~~~~H~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~---------------------------~~~~~~--- 60 (233)
...-++.||...|++++++.+...++||+ .+++++|+..+... +.+...
T Consensus 364 ~~~i~~~GHR~dVRsl~vS~d~~~~~Sga-~~SikiWn~~t~kciRTi~~~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdla 442 (888)
T KOG0306|consen 364 TSNIEIGGHRSDVRSLCVSSDSILLASGA-GESIKIWNRDTLKCIRTITCGYILASKFVPGDRYIVLGTKNGELQVFDLA 442 (888)
T ss_pred cceeeeccchhheeEEEeecCceeeeecC-CCcEEEEEccCcceeEEeccccEEEEEecCCCceEEEeccCCceEEEEee
Confidence 34457789999999999999988888876 58999998753210 000000
Q ss_pred ------EEecCcCcEEEEEEcCCCCCEEEEEeCCCeEEEEECCC-----Cee--------eeeeeecCCeeEEEECCCCC
Q 026765 61 ------ELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARS-----GKC--------SQQAELSGENINITYKPDGT 121 (233)
Q Consensus 61 ------~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~iwd~~~-----~~~--------~~~~~~~~~~~~~~~~~~~~ 121 (233)
..++|.+.+-+++..|++. -+++||.|++|++||... +.. ..++++...+.++.++||++
T Consensus 443 S~~l~Eti~AHdgaIWsi~~~pD~~-g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk 521 (888)
T KOG0306|consen 443 SASLVETIRAHDGAIWSISLSPDNK-GFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGK 521 (888)
T ss_pred hhhhhhhhhccccceeeeeecCCCC-ceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCc
Confidence 2458999999999999865 567999999999998631 111 13455667788999999999
Q ss_pred eEEEEcCCCcEEEEEcCCCeee-eeeecCceeeEEEECCCCCEEEEEeCCCeEEEEecCCceeeeEEeeecCceeEEEEC
Q 026765 122 HIAVGNRDDELTILDVRKFKPI-HRRKFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAHTAGCYCIAID 200 (233)
Q Consensus 122 ~l~~~~~d~~i~i~d~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~i~~~ 200 (233)
+++++--|.++++|-+.+.+-. ..+-+..|+.++..+|+++.+++++.|.+|++|-++-+.+.+.+-+|...|.++.|-
T Consensus 522 ~LaVsLLdnTVkVyflDtlKFflsLYGHkLPV~smDIS~DSklivTgSADKnVKiWGLdFGDCHKS~fAHdDSvm~V~F~ 601 (888)
T KOG0306|consen 522 LLAVSLLDNTVKVYFLDTLKFFLSLYGHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGDCHKSFFAHDDSVMSVQFL 601 (888)
T ss_pred EEEEEeccCeEEEEEecceeeeeeecccccceeEEeccCCcCeEEeccCCCceEEeccccchhhhhhhcccCceeEEEEc
Confidence 9999999999999998876543 335567899999999999999999999999999999899999999999999999999
Q ss_pred CCCCEEEEeeCCCcEEEEecCCcEEEEeeecC
Q 026765 201 PMGRYFAVGSADSLVSLWDISEMLCVRTFTKL 232 (233)
Q Consensus 201 p~~~~las~s~dg~v~iwd~~~~~~i~~~~~~ 232 (233)
|....+.+++.|+.|+-||...-++++++.++
T Consensus 602 P~~~~FFt~gKD~kvKqWDg~kFe~iq~L~~H 633 (888)
T KOG0306|consen 602 PKTHLFFTCGKDGKVKQWDGEKFEEIQKLDGH 633 (888)
T ss_pred ccceeEEEecCcceEEeechhhhhhheeeccc
Confidence 99999999999999999999999999988765
No 88
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.94 E-value=2.7e-25 Score=163.29 Aligned_cols=213 Identities=20% Similarity=0.321 Sum_probs=171.6
Q ss_pred eCccccEEEEEECc-CCCEEEEEeCCCCEEEEecccCCCC----ce---eeE----EEecCcCcEEEEEEcCCCCCEEEE
Q 026765 17 TGHKKKVHSVAWNC-TGTKLASGSVDQTARVWHIEPHGHG----KV---KDI----ELRGHADSVDQLCWDPKHADLIAT 84 (233)
Q Consensus 17 ~~H~~~V~~~~~~~-~~~~l~s~~~D~~v~vW~~~~~~~~----~~---~~~----~~~~h~~~v~~~~~~~~~~~~l~s 84 (233)
..|.+.|+++...+ .|.+|+||++||.+.|||++..... -+ .++ .-.+|+-.|.++.|-|-+..++.+
T Consensus 40 r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFts 119 (397)
T KOG4283|consen 40 RPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTS 119 (397)
T ss_pred ccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeec
Confidence 57999999999987 6899999999999999999753311 01 111 123688899999999998889999
Q ss_pred EeCCCeEEEEECCCCeeeeeeeecCCeeEEEECCC---CCeEEEEcCCCcEEEEEcCCCeeeeeee-cCceeeEEEECCC
Q 026765 85 ASGDKTVRLWDARSGKCSQQAELSGENINITYKPD---GTHIAVGNRDDELTILDVRKFKPIHRRK-FGYEVNEIAWNMT 160 (233)
Q Consensus 85 g~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~---~~~l~~~~~d~~i~i~d~~~~~~~~~~~-~~~~~~~~~~~~~ 160 (233)
++.|.+++|||..+-+....+..++.++.-+++|= -..+++|..+..+++-|+.++.-.+.+. +...+..+.|+|.
T Consensus 120 sSFDhtlKVWDtnTlQ~a~~F~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vlaV~Wsp~ 199 (397)
T KOG4283|consen 120 SSFDHTLKVWDTNTLQEAVDFKMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLAVEWSPS 199 (397)
T ss_pred ccccceEEEeecccceeeEEeecCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCceEEEEeccC
Confidence 99999999999999888888888888888777773 3467889999999999999887666554 4568999999999
Q ss_pred CCEE-EEEeCCCeEEEEecCCc-eeeeE--------------EeeecCceeEEEECCCCCEEEEeeCCCcEEEEecCCcE
Q 026765 161 GEMF-FLTTGNGTVEVLTYPSL-RPLDT--------------VVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEML 224 (233)
Q Consensus 161 ~~~~-~~~~~~~~v~~~~~~~~-~~~~~--------------~~~~~~~v~~i~~~p~~~~las~s~dg~v~iwd~~~~~ 224 (233)
.+++ ++|+.||.+++||.+.. -++.. =..|.+.|+.++|+.++.++++++.|..+++|+..+|+
T Consensus 200 ~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~~~G~ 279 (397)
T KOG4283|consen 200 SEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNMESGR 279 (397)
T ss_pred ceeEEEecCCCceEEEEEeecccceeEEeecccCccCccccccccccceeeeeeecccchhhhhccCccceEEeecccCc
Confidence 9886 46788999999998643 12222 23477889999999999999999999999999999886
Q ss_pred E-EEee
Q 026765 225 C-VRTF 229 (233)
Q Consensus 225 ~-i~~~ 229 (233)
- +++|
T Consensus 280 ntl~~~ 285 (397)
T KOG4283|consen 280 NTLREF 285 (397)
T ss_pred cccccc
Confidence 4 4444
No 89
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.94 E-value=1.6e-25 Score=184.79 Aligned_cols=203 Identities=15% Similarity=0.246 Sum_probs=173.8
Q ss_pred eeCccccEEEEEECcCCCEEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCCeEEEEE
Q 026765 16 YTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWD 95 (233)
Q Consensus 16 ~~~H~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~iwd 95 (233)
|...+..|..++|+|...+++++-..|.|++||..-. +..-++..|.++|+.++|||.++ +++||+.|-.|+||+
T Consensus 5 fEskSsRvKglsFHP~rPwILtslHsG~IQlWDYRM~----tli~rFdeHdGpVRgv~FH~~qp-lFVSGGDDykIkVWn 79 (1202)
T KOG0292|consen 5 FESKSSRVKGLSFHPKRPWILTSLHSGVIQLWDYRMG----TLIDRFDEHDGPVRGVDFHPTQP-LFVSGGDDYKIKVWN 79 (1202)
T ss_pred hhcccccccceecCCCCCEEEEeecCceeeeehhhhh----hHHhhhhccCCccceeeecCCCC-eEEecCCccEEEEEe
Confidence 4556788999999999999999999999999998642 23336788999999999999865 789999999999999
Q ss_pred CCCCeeeeeeeec-CCeeEEEECCCCCeEEEEcCCCcEEEEEcCCCeeeeeee-cCceeeEEEECCCCCEEEEEeCCCeE
Q 026765 96 ARSGKCSQQAELS-GENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRK-FGYEVNEIAWNMTGEMFFLTTGNGTV 173 (233)
Q Consensus 96 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~v 173 (233)
..+.+|..++..+ .-+..+.|++.-.+|++++.|.+|+||+..+.+.+.... +.+-+.+..|+|....+++++-|.+|
T Consensus 80 Yk~rrclftL~GHlDYVRt~~FHheyPWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptEDlIVSaSLDQTV 159 (1202)
T KOG0292|consen 80 YKTRRCLFTLLGHLDYVRTVFFHHEYPWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQTV 159 (1202)
T ss_pred cccceehhhhccccceeEEeeccCCCceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCCccceEEEecccceE
Confidence 9999988776655 345678999999999999999999999998887776543 67889999999999999999999999
Q ss_pred EEEecCCce----------------------------e-eeEEeeecCceeEEEECCCCCEEEEeeCCCcEEEEecCCc
Q 026765 174 EVLTYPSLR----------------------------P-LDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEM 223 (233)
Q Consensus 174 ~~~~~~~~~----------------------------~-~~~~~~~~~~v~~i~~~p~~~~las~s~dg~v~iwd~~~~ 223 (233)
++||..-.+ . -..+.+|+.+|+.++|+|.-..|++|+.|+.|++|.++..
T Consensus 160 RVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnet 238 (1202)
T KOG0292|consen 160 RVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNET 238 (1202)
T ss_pred EEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEecCCcceeeEEEeccc
Confidence 999963110 0 1235689999999999999999999999999999999764
No 90
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=3.5e-26 Score=182.96 Aligned_cols=214 Identities=17% Similarity=0.314 Sum_probs=171.5
Q ss_pred CccccEE---EEEECcC-CCEEEEEeCCCCEEEEecccCCCC--ceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCCeE
Q 026765 18 GHKKKVH---SVAWNCT-GTKLASGSVDQTARVWHIEPHGHG--KVKDIELRGHADSVDQLCWDPKHADLIATASGDKTV 91 (233)
Q Consensus 18 ~H~~~V~---~~~~~~~-~~~l~s~~~D~~v~vW~~~~~~~~--~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i 91 (233)
.|...|. ++..+.. +++|+|||.||.|++|++...... ......+..|.+.|+++....++ +.|+|++.|-+|
T Consensus 19 qn~~~v~~~~~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~-~tlIS~SsDtTV 97 (735)
T KOG0308|consen 19 QNRNGVNITKALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNG-KTLISASSDTTV 97 (735)
T ss_pred hccccccchhhccccCCCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCC-CceEEecCCceE
Confidence 5666677 6666654 456999999999999998643321 11233566899999999887654 467899999999
Q ss_pred EEEECCCC--eeeeeeee-cCCeeEEEE-CCCCCeEEEEcCCCcEEEEEcCCCee--eee--------ee--cCceeeEE
Q 026765 92 RLWDARSG--KCSQQAEL-SGENINITY-KPDGTHIAVGNRDDELTILDVRKFKP--IHR--------RK--FGYEVNEI 155 (233)
Q Consensus 92 ~iwd~~~~--~~~~~~~~-~~~~~~~~~-~~~~~~l~~~~~d~~i~i~d~~~~~~--~~~--------~~--~~~~~~~~ 155 (233)
++|+...+ -|+..+.. ..-+.++++ .++...+++|+-|+.|.+||+..+.. +.. .. ....+.++
T Consensus 98 K~W~~~~~~~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSL 177 (735)
T KOG0308|consen 98 KVWNAHKDNTFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSL 177 (735)
T ss_pred EEeecccCcchhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhccccccccCCCCCccceeee
Confidence 99998776 34444433 345667888 78888999999999999999975521 111 11 12358889
Q ss_pred EECCCCCEEEEEeCCCeEEEEecCCceeeeEEeeecCceeEEEECCCCCEEEEeeCCCcEEEEecCCcEEEEeeecC
Q 026765 156 AWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKL 232 (233)
Q Consensus 156 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~las~s~dg~v~iwd~~~~~~i~~~~~~ 232 (233)
+-+++|-.++.|+.++.+++||.++.+.+..+.+|..-|.++-.+++|+.+++||.||+|++||+.+..|+.+|..+
T Consensus 178 A~N~t~t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~vH 254 (735)
T KOG0308|consen 178 AMNQTGTIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRCLATYIVH 254 (735)
T ss_pred ecCCcceEEEecCcccceEEeccccccceeeeeccccceEEEEEcCCCCeEeecCCCceEEeeeccccceeeeEEec
Confidence 99999988999999999999999999999999999999999999999999999999999999999999999999876
No 91
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.94 E-value=8.2e-25 Score=179.97 Aligned_cols=204 Identities=23% Similarity=0.381 Sum_probs=174.9
Q ss_pred ccccEEEEEECcCCCEEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCCeEEEEECCC
Q 026765 19 HKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARS 98 (233)
Q Consensus 19 H~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~iwd~~~ 98 (233)
|...+.+..|. ..++++++.|+++++|+... .......+.||.+.|.++++.. +..++++|+.|+++++||..+
T Consensus 207 ~~~~~~~~q~~--~~~~~~~s~~~tl~~~~~~~---~~~i~~~l~GH~g~V~~l~~~~-~~~~lvsgS~D~t~rvWd~~s 280 (537)
T KOG0274|consen 207 DDHVVLCLQLH--DGFFKSGSDDSTLHLWDLNN---GYLILTRLVGHFGGVWGLAFPS-GGDKLVSGSTDKTERVWDCST 280 (537)
T ss_pred Ccchhhhheee--cCeEEecCCCceeEEeeccc---ceEEEeeccCCCCCceeEEEec-CCCEEEEEecCCcEEeEecCC
Confidence 57778888887 78899999999999999754 2333445889999999999975 567889999999999999999
Q ss_pred CeeeeeeeecCCeeEEEECCCCCeEEEEcCCCcEEEEEcCCCeeeeeee-cCceeeEEEECCCCCEEEEEeCCCeEEEEe
Q 026765 99 GKCSQQAELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRK-FGYEVNEIAWNMTGEMFFLTTGNGTVEVLT 177 (233)
Q Consensus 99 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 177 (233)
++|...+..+.... .+....+.++++|+.|.++++|++.+...++... +..+|.++..+ +.++++|+.|+.|++|+
T Consensus 281 g~C~~~l~gh~stv-~~~~~~~~~~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~--~~~lvsgs~d~~v~VW~ 357 (537)
T KOG0274|consen 281 GECTHSLQGHTSSV-RCLTIDPFLLVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLD--EPLLVSGSYDGTVKVWD 357 (537)
T ss_pred CcEEEEecCCCceE-EEEEccCceEeeccCCceEEEEeccCcceEEEeccccccEEEEEec--CCEEEEEecCceEEEEE
Confidence 99999887554333 2233445577888999999999999888877766 77889999886 88999999999999999
Q ss_pred cCCceeeeEEeeecCceeEEEECCCCCEEEEeeCCCcEEEEecCCc-EEEEeeecC
Q 026765 178 YPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEM-LCVRTFTKL 232 (233)
Q Consensus 178 ~~~~~~~~~~~~~~~~v~~i~~~p~~~~las~s~dg~v~iwd~~~~-~~i~~~~~~ 232 (233)
..+++++..+.+|...|.++.+.+. .++.+|+.|++|++||+... +|+++|..+
T Consensus 358 ~~~~~cl~sl~gH~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h 412 (537)
T KOG0274|consen 358 PRTGKCLKSLSGHTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKRKCIHTLQGH 412 (537)
T ss_pred hhhceeeeeecCCcceEEEEEecCc-ceEEeeeeccceEeecCCchhhhhhhhcCC
Confidence 9999999999999999999988776 89999999999999999999 999988765
No 92
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.94 E-value=2.5e-25 Score=164.54 Aligned_cols=211 Identities=18% Similarity=0.302 Sum_probs=169.0
Q ss_pred CCCccceeeeCccccEEEEEECcCCCEEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeC
Q 026765 8 FKNLHSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASG 87 (233)
Q Consensus 8 ~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~ 87 (233)
-...-+++|-.|..+|+++.|+|-...|+||+.|++||++|.......+ .........+|.++.|+|.| .+|+.|..
T Consensus 160 a~hPvIRTlYDH~devn~l~FHPre~ILiS~srD~tvKlFDfsK~saKr--A~K~~qd~~~vrsiSfHPsG-efllvgTd 236 (430)
T KOG0640|consen 160 ARHPVIRTLYDHVDEVNDLDFHPRETILISGSRDNTVKLFDFSKTSAKR--AFKVFQDTEPVRSISFHPSG-EFLLVGTD 236 (430)
T ss_pred cCCceEeehhhccCcccceeecchhheEEeccCCCeEEEEecccHHHHH--HHHHhhccceeeeEeecCCC-ceEEEecC
Confidence 4445678899999999999999999999999999999999986422111 11111245689999999975 67788888
Q ss_pred CCeEEEEECCCCeeeeeeee----cCCeeEEEECCCCCeEEEEcCCCcEEEEEcCCCeeeeeee---cCceeeEEEECCC
Q 026765 88 DKTVRLWDARSGKCSQQAEL----SGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRK---FGYEVNEIAWNMT 160 (233)
Q Consensus 88 d~~i~iwd~~~~~~~~~~~~----~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~---~~~~~~~~~~~~~ 160 (233)
-.++++||+.+-+|-..... .+.+.++.+++.++..++++.||.|++||-.+.+.+..+. -+.++.+..|+.+
T Consensus 237 Hp~~rlYdv~T~QcfvsanPd~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rCv~t~~~AH~gsevcSa~Ftkn 316 (430)
T KOG0640|consen 237 HPTLRLYDVNTYQCFVSANPDDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRCVRTIGNAHGGSEVCSAVFTKN 316 (430)
T ss_pred CCceeEEeccceeEeeecCcccccccceeEEEecCCccEEEEeccCCcEEeeccccHHHHHHHHhhcCCceeeeEEEccC
Confidence 88999999999887554432 3456679999999999999999999999977766654433 2467999999999
Q ss_pred CCEEEEEeCCCeEEEEecCCceeeeEEee-------------------------------------------------ec
Q 026765 161 GEMFFLTTGNGTVEVLTYPSLRPLDTVVA-------------------------------------------------HT 191 (233)
Q Consensus 161 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~-------------------------------------------------~~ 191 (233)
++++++.+.|..+++|.+.+++.+..+.+ |.
T Consensus 317 ~kyiLsSG~DS~vkLWEi~t~R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~slgHn 396 (430)
T KOG0640|consen 317 GKYILSSGKDSTVKLWEISTGRMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLSLGHN 396 (430)
T ss_pred CeEEeecCCcceeeeeeecCCceEEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccchhhhhhcccCCC
Confidence 99999999999999999877766544432 45
Q ss_pred CceeEEEECCCCCEEEEeeCCCcEEEEecC
Q 026765 192 AGCYCIAIDPMGRYFAVGSADSLVSLWDIS 221 (233)
Q Consensus 192 ~~v~~i~~~p~~~~las~s~dg~v~iwd~~ 221 (233)
+.+.++.-||.+.-+.+||.|..+++|--+
T Consensus 397 ~a~R~i~HSP~~p~FmTcsdD~raRFWyrr 426 (430)
T KOG0640|consen 397 GAVRWIVHSPVEPAFMTCSDDFRARFWYRR 426 (430)
T ss_pred CCceEEEeCCCCCceeeecccceeeeeeec
Confidence 667788889999999999999999999654
No 93
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=2.8e-25 Score=171.61 Aligned_cols=207 Identities=19% Similarity=0.282 Sum_probs=169.7
Q ss_pred ccccEEEEEECcCCCEEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCCeEEEEECCC
Q 026765 19 HKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARS 98 (233)
Q Consensus 19 H~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~iwd~~~ 98 (233)
-.++|.|++-+|.|.+|+.|.-.+.+.+|.+.++. . ...+.+|-..|+++.|+.++ .+|+|||.||.|.+|.+-.
T Consensus 80 ~Pg~v~al~s~n~G~~l~ag~i~g~lYlWelssG~---L-L~v~~aHYQ~ITcL~fs~dg-s~iiTgskDg~V~vW~l~~ 154 (476)
T KOG0646|consen 80 LPGPVHALASSNLGYFLLAGTISGNLYLWELSSGI---L-LNVLSAHYQSITCLKFSDDG-SHIITGSKDGAVLVWLLTD 154 (476)
T ss_pred cccceeeeecCCCceEEEeecccCcEEEEEecccc---H-HHHHHhhccceeEEEEeCCC-cEEEecCCCccEEEEEEEe
Confidence 47889999999999999999899999999997633 1 22457899999999999775 5788999999999998631
Q ss_pred ---------CeeeeeeeecC-CeeEEEE--CCCCCeEEEEcCCCcEEEEEcCCCeeeeeeecCceeeEEEECCCCCEEEE
Q 026765 99 ---------GKCSQQAELSG-ENINITY--KPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFL 166 (233)
Q Consensus 99 ---------~~~~~~~~~~~-~~~~~~~--~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (233)
......+..+. .+..+.. .+...++++++.|.++++||+..+..+....+...+.+++.+|.+..+.+
T Consensus 155 lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdlS~g~LLlti~fp~si~av~lDpae~~~yi 234 (476)
T KOG0646|consen 155 LVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDLSLGVLLLTITFPSSIKAVALDPAERVVYI 234 (476)
T ss_pred ecccccCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEeccceeeEEEecCCcceeEEEcccccEEEe
Confidence 12222232222 3344444 33456899999999999999999998888888899999999999999999
Q ss_pred EeCCCeEEEEecCCc----------------eeeeEEeeecC--ceeEEEECCCCCEEEEeeCCCcEEEEecCCcEEEEe
Q 026765 167 TTGNGTVEVLTYPSL----------------RPLDTVVAHTA--GCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRT 228 (233)
Q Consensus 167 ~~~~~~v~~~~~~~~----------------~~~~~~~~~~~--~v~~i~~~p~~~~las~s~dg~v~iwd~~~~~~i~~ 228 (233)
|+.+|.+.+.++... ..+..+.+|.. .|+|++++-||..|++|+.||+|+|||+.+..|||+
T Consensus 235 Gt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~Q~iRt 314 (476)
T KOG0646|consen 235 GTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSKQCIRT 314 (476)
T ss_pred cCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEecchHHHHHH
Confidence 999999998876421 23556778887 899999999999999999999999999999999988
Q ss_pred ee
Q 026765 229 FT 230 (233)
Q Consensus 229 ~~ 230 (233)
++
T Consensus 315 l~ 316 (476)
T KOG0646|consen 315 LQ 316 (476)
T ss_pred Hh
Confidence 75
No 94
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=1.5e-25 Score=179.35 Aligned_cols=218 Identities=21% Similarity=0.294 Sum_probs=182.0
Q ss_pred CccceeeeCccccEEEEEECcCCCEEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCC
Q 026765 10 NLHSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDK 89 (233)
Q Consensus 10 ~~~~~~~~~H~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~ 89 (233)
+.+...+..|.+-|+.+....+++.|+|+|.|-+|++|+....... +...+..|.+.|.++++...+..+++|||-|+
T Consensus 63 ~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~~~--c~stir~H~DYVkcla~~ak~~~lvaSgGLD~ 140 (735)
T KOG0308|consen 63 TPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDNTF--CMSTIRTHKDYVKCLAYIAKNNELVASGGLDR 140 (735)
T ss_pred cchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCcch--hHhhhhcccchheeeeecccCceeEEecCCCc
Confidence 3456778899999999999999999999999999999998754322 22346789999999999444567899999999
Q ss_pred eEEEEECCCCe--eeeeee----------ecCCeeEEEECCCCCeEEEEcCCCcEEEEEcCCCeeeeeee-cCceeeEEE
Q 026765 90 TVRLWDARSGK--CSQQAE----------LSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRK-FGYEVNEIA 156 (233)
Q Consensus 90 ~i~iwd~~~~~--~~~~~~----------~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~-~~~~~~~~~ 156 (233)
.|.+||+.++. ....+. ....+++++..+.|..+++|+-.+.+++||.++.+.+..+. +...|..+.
T Consensus 141 ~IflWDin~~~~~l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt~~kimkLrGHTdNVr~ll 220 (735)
T KOG0308|consen 141 KIFLWDINTGTATLVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCKKIMKLRGHTDNVRVLL 220 (735)
T ss_pred cEEEEEccCcchhhhhhccccccccCCCCCccceeeeecCCcceEEEecCcccceEEeccccccceeeeeccccceEEEE
Confidence 99999999773 222111 12345778889999899999999999999999988776655 445688999
Q ss_pred ECCCCCEEEEEeCCCeEEEEecCCceeeeEEeeecCceeEEEECCCCCEEEEeeCCCcEEEEecCC-cEEEEee
Q 026765 157 WNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISE-MLCVRTF 229 (233)
Q Consensus 157 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~las~s~dg~v~iwd~~~-~~~i~~~ 229 (233)
.+.+|..+++++.||+|++||+...+++.++..|.+.|+++..+|+=.++.+|+.||.|..=|+.. .++...|
T Consensus 221 ~~dDGt~~ls~sSDgtIrlWdLgqQrCl~T~~vH~e~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~~~~tlic 294 (735)
T KOG0308|consen 221 VNDDGTRLLSASSDGTIRLWDLGQQRCLATYIVHKEGVWALQSSPSFTHVYSGGRDGNIYRTDLRNPAKSTLIC 294 (735)
T ss_pred EcCCCCeEeecCCCceEEeeeccccceeeeEEeccCceEEEeeCCCcceEEecCCCCcEEecccCCchhheEee
Confidence 999999999999999999999999999999999999999999999999999999999999988876 4444444
No 95
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=1.8e-24 Score=160.22 Aligned_cols=209 Identities=17% Similarity=0.321 Sum_probs=164.0
Q ss_pred CCCCccceeeeCc--cccEEEEEECcCCCEEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEE
Q 026765 7 PFKNLHSREYTGH--KKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIAT 84 (233)
Q Consensus 7 ~~~~~~~~~~~~H--~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~s 84 (233)
||...++.++.+| .....|+.||+-|.+||.|+.||.|.|||+.+.+..+ .+.+|..+|.+++|+++| +.|++
T Consensus 8 ~f~~~~PEel~~tld~~~a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar----~lsaH~~pi~sl~WS~dg-r~Llt 82 (405)
T KOG1273|consen 8 PFGVEYPEELTHTLDNPLAECCQFSRWGDYLAVGCANGRVVIYDFDTFRIAR----MLSAHVRPITSLCWSRDG-RKLLT 82 (405)
T ss_pred cccccChHhhceeccCCccceEEeccCcceeeeeccCCcEEEEEccccchhh----hhhccccceeEEEecCCC-CEeee
Confidence 5655666555543 2227899999999999999999999999998755332 477999999999999986 56779
Q ss_pred EeCCCeEEEEECCCCeeeeeeeecCCeeEEEECCCCCeEE-EEcCCCcEEEEEcCCCeeeeeeec-------CceeeEEE
Q 026765 85 ASGDKTVRLWDARSGKCSQQAELSGENINITYKPDGTHIA-VGNRDDELTILDVRKFKPIHRRKF-------GYEVNEIA 156 (233)
Q Consensus 85 g~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~d~~i~i~d~~~~~~~~~~~~-------~~~~~~~~ 156 (233)
++.|..|++||+..|.+.+.+.+..++..+.|+|.....+ +.-.+..-.+.++.. +.+.... .....+..
T Consensus 83 sS~D~si~lwDl~~gs~l~rirf~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~--~~h~~Lp~d~d~dln~sas~~~ 160 (405)
T KOG1273|consen 83 SSRDWSIKLWDLLKGSPLKRIRFDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSD--PKHSVLPKDDDGDLNSSASHGV 160 (405)
T ss_pred ecCCceeEEEeccCCCceeEEEccCccceeeeccccCCeEEEEEecCCcEEEEecC--CceeeccCCCcccccccccccc
Confidence 9999999999999999999999999999999999654433 333333344444432 2222111 11233446
Q ss_pred ECCCCCEEEEEeCCCeEEEEecCCceeeeEEeeec-CceeEEEECCCCCEEEEeeCCCcEEEEecCC
Q 026765 157 WNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAHT-AGCYCIAIDPMGRYFAVGSADSLVSLWDISE 222 (233)
Q Consensus 157 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~-~~v~~i~~~p~~~~las~s~dg~v~iwd~~~ 222 (233)
|++.|+++++|.+.|.+.+++..+.+++..+.... ..|..|.++..|++|+..+.|+.||.|++.+
T Consensus 161 fdr~g~yIitGtsKGkllv~~a~t~e~vas~rits~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~d 227 (405)
T KOG1273|consen 161 FDRRGKYIITGTSKGKLLVYDAETLECVASFRITSVQAIKQIIVSRKGRFLIINTSDRVIRTYEISD 227 (405)
T ss_pred ccCCCCEEEEecCcceEEEEecchheeeeeeeechheeeeEEEEeccCcEEEEecCCceEEEEehhh
Confidence 88999999999999999999999999888877655 6788999999999999999999999999874
No 96
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.94 E-value=1.7e-25 Score=175.00 Aligned_cols=201 Identities=20% Similarity=0.329 Sum_probs=157.1
Q ss_pred eCccccEEEEEECcCC-CEEEEEeCCCCEEEEecccCCCCceeeEEE---ecCcCcEEEEEEcCCCCCEEEEEeCCCeEE
Q 026765 17 TGHKKKVHSVAWNCTG-TKLASGSVDQTARVWHIEPHGHGKVKDIEL---RGHADSVDQLCWDPKHADLIATASGDKTVR 92 (233)
Q Consensus 17 ~~H~~~V~~~~~~~~~-~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~---~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~ 92 (233)
.||.+.++|.+|+|+. ..++|++.|+++|||+++.... ....+.- .+..-+++.++|++++ .+||+|+.||.|.
T Consensus 265 KGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~-q~qVik~k~~~g~Rv~~tsC~~nrdg-~~iAagc~DGSIQ 342 (641)
T KOG0772|consen 265 KGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKS-QLQVIKTKPAGGKRVPVTSCAWNRDG-KLIAAGCLDGSIQ 342 (641)
T ss_pred CCceeeeeccccccCcccceEEecCCCcEEEEecCCchh-heeEEeeccCCCcccCceeeecCCCc-chhhhcccCCcee
Confidence 5999999999999986 4789999999999999975432 1111111 2344578999999986 5689999999999
Q ss_pred EEECCCCee-----eeeee-ecCCeeEEEECCCCCeEEEEcCCCcEEEEEcCCCeeeee----eecCceeeEEEECCCCC
Q 026765 93 LWDARSGKC-----SQQAE-LSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHR----RKFGYEVNEIAWNMTGE 162 (233)
Q Consensus 93 iwd~~~~~~-----~~~~~-~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~----~~~~~~~~~~~~~~~~~ 162 (233)
+|+.+.... +.... ....+.++.|+++|++|++-+.|+++++||++..+.--. +...++-+.++|+|+.+
T Consensus 343 ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~k 422 (641)
T KOG0772|consen 343 IWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFKKPLNVRTGLPTPFPGTDCCFSPDDK 422 (641)
T ss_pred eeecCCcccccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeeccccccchhhhcCCCccCCCCccccCCCce
Confidence 999754322 11111 123567899999999999999999999999998653221 22234677899999999
Q ss_pred EEEEEeC------CCeEEEEecCCceeeeEEeeecCceeEEEECCCCCEEEEeeCCCcEEEEe
Q 026765 163 MFFLTTG------NGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWD 219 (233)
Q Consensus 163 ~~~~~~~------~~~v~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~las~s~dg~v~iwd 219 (233)
++++|.. .|++.+||..+.+.+..+.-....|..+.|+|.-+.|..|+.||+++||-
T Consensus 423 li~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~~aSvv~~~WhpkLNQi~~gsgdG~~~vyY 485 (641)
T KOG0772|consen 423 LILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDISTASVVRCLWHPKLNQIFAGSGDGTAHVYY 485 (641)
T ss_pred EEEecccccCCCCCceEEEEeccceeeEEEecCCCceEEEEeecchhhheeeecCCCceEEEE
Confidence 9998864 57899999888888777766678889999999999999999999998874
No 97
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=1.6e-25 Score=182.18 Aligned_cols=208 Identities=20% Similarity=0.293 Sum_probs=162.0
Q ss_pred EEEEEECc-CCCEEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCee
Q 026765 23 VHSVAWNC-TGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKC 101 (233)
Q Consensus 23 V~~~~~~~-~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~ 101 (233)
+..|+|+. +.++|||++..|.|.+||+......+ ....+..|+..+++++|++..+++|+||++||+|++||++..+.
T Consensus 90 ~~DVkW~~~~~NlIAT~s~nG~i~vWdlnk~~rnk-~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S 168 (839)
T KOG0269|consen 90 AADVKWGQLYSNLIATCSTNGVISVWDLNKSIRNK-LLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKS 168 (839)
T ss_pred hhhcccccchhhhheeecCCCcEEEEecCccccch-hhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccc
Confidence 44677763 46889999999999999997532211 22346789999999999999999999999999999999998776
Q ss_pred eeeeeec-CCeeEEEECCC-CCeEEEEcCCCcEEEEEcCCCeeee--eeecCceeeEEEECCCCCEEEEEeCCCeEEEEe
Q 026765 102 SQQAELS-GENINITYKPD-GTHIAVGNRDDELTILDVRKFKPIH--RRKFGYEVNEIAWNMTGEMFFLTTGNGTVEVLT 177 (233)
Q Consensus 102 ~~~~~~~-~~~~~~~~~~~-~~~l~~~~~d~~i~i~d~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 177 (233)
...+... ..+..|.|+|. +.+++++...|.+.+||+|....-. ...+..++.++.|+|++.++++|+.|+.++||+
T Consensus 169 ~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd 248 (839)
T KOG0269|consen 169 KSTFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWD 248 (839)
T ss_pred cccccccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCccEEEEe
Confidence 5554433 34567999984 6788899999999999999755422 223567899999999999999999999999999
Q ss_pred cCCceeeeEEeee-cCceeEEEECCCCCE-EEEee--CCCcEEEEecCCcE-EEEeeec
Q 026765 178 YPSLRPLDTVVAH-TAGCYCIAIDPMGRY-FAVGS--ADSLVSLWDISEML-CVRTFTK 231 (233)
Q Consensus 178 ~~~~~~~~~~~~~-~~~v~~i~~~p~~~~-las~s--~dg~v~iwd~~~~~-~i~~~~~ 231 (233)
..+.+.......+ ..+|.+++|-|..++ ||+++ .|-.|+|||++.-. +-.+|.+
T Consensus 249 ~t~~~~~~~~tInTiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~~e 307 (839)
T KOG0269|consen 249 MTDSRAKPKHTINTIAPVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATFLE 307 (839)
T ss_pred ccCCCccceeEEeecceeeeeeeccCccchhhhhhccccceEEEEeeccccccceeeec
Confidence 9876655444443 467899999998764 78777 57889999997543 2444443
No 98
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=6.2e-24 Score=157.20 Aligned_cols=212 Identities=17% Similarity=0.279 Sum_probs=171.2
Q ss_pred cceeeeCccccEEEEEECcCCCEEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCC-CEEEEEeCCCe
Q 026765 12 HSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHA-DLIATASGDKT 90 (233)
Q Consensus 12 ~~~~~~~H~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~~l~sg~~d~~ 90 (233)
+...|..|.++|++|+. ++.++||||.|.+|+|||+....+ .-.+..|.+.|+++.|.+.-+ ..|+||+.||.
T Consensus 35 ~lF~~~aH~~sitavAV--s~~~~aSGssDetI~IYDm~k~~q----lg~ll~HagsitaL~F~~~~S~shLlS~sdDG~ 108 (362)
T KOG0294|consen 35 PLFAFSAHAGSITALAV--SGPYVASGSSDETIHIYDMRKRKQ----LGILLSHAGSITALKFYPPLSKSHLLSGSDDGH 108 (362)
T ss_pred ccccccccccceeEEEe--cceeEeccCCCCcEEEEeccchhh----hcceeccccceEEEEecCCcchhheeeecCCCc
Confidence 44678899999999996 599999999999999999965322 223557999999999977532 25679999999
Q ss_pred EEEEECCCCeeeeeeeec-CCeeEEEECCCCCeEEEEcCCCcEEEEEcCCCeeeeeeecCceeeEEEECCCCCEEEEEeC
Q 026765 91 VRLWDARSGKCSQQAELS-GENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTG 169 (233)
Q Consensus 91 i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (233)
|.+|+.....+...+..+ +.+..++.+|.++..++.+.|+.++.||+..++.............+.|.|.|.+++++..
T Consensus 109 i~iw~~~~W~~~~slK~H~~~Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~a~v~~L~~~at~v~w~~~Gd~F~v~~~ 188 (362)
T KOG0294|consen 109 IIIWRVGSWELLKSLKAHKGQVTDLSIHPSGKLALSVGGDQVLRTWNLVRGRVAFVLNLKNKATLVSWSPQGDHFVVSGR 188 (362)
T ss_pred EEEEEcCCeEEeeeecccccccceeEecCCCceEEEEcCCceeeeehhhcCccceeeccCCcceeeEEcCCCCEEEEEec
Confidence 999999988777766544 4567799999999999999999999999988887766666667777999999999999887
Q ss_pred CCeEEEEecCCceeeeEEeeecCceeEEEECCCCCEEEEeeCCCcEEEEecCCcEEEEeeecC
Q 026765 170 NGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKL 232 (233)
Q Consensus 170 ~~~v~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~las~s~dg~v~iwd~~~~~~i~~~~~~ 232 (233)
+ .|-+|.+++...+..+. ....+.|+.|- ++..|++|..|+.|++||.+++.+..+|..|
T Consensus 189 ~-~i~i~q~d~A~v~~~i~-~~~r~l~~~~l-~~~~L~vG~d~~~i~~~D~ds~~~~~~~~AH 248 (362)
T KOG0294|consen 189 N-KIDIYQLDNASVFREIE-NPKRILCATFL-DGSELLVGGDNEWISLKDTDSDTPLTEFLAH 248 (362)
T ss_pred c-EEEEEecccHhHhhhhh-ccccceeeeec-CCceEEEecCCceEEEeccCCCccceeeecc
Confidence 7 57888877655444333 23456677775 5678999999999999999998888777655
No 99
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.93 E-value=1.5e-24 Score=155.44 Aligned_cols=209 Identities=25% Similarity=0.321 Sum_probs=155.8
Q ss_pred ccceeeeCccccEEEEEECc--CCCEEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCC-CEEEEEeC
Q 026765 11 LHSREYTGHKKKVHSVAWNC--TGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHA-DLIATASG 87 (233)
Q Consensus 11 ~~~~~~~~H~~~V~~~~~~~--~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~~l~sg~~ 87 (233)
.+..++.||.++|+.++|-+ .|.+|||+++||.|.||.-+.. ...+..+...|...|++++|.|.+- -+|++|+.
T Consensus 47 ~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke~~g--~w~k~~e~~~h~~SVNsV~wapheygl~LacasS 124 (299)
T KOG1332|consen 47 KLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKEENG--RWTKAYEHAAHSASVNSVAWAPHEYGLLLACASS 124 (299)
T ss_pred eeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEecCCC--chhhhhhhhhhcccceeecccccccceEEEEeeC
Confidence 34578999999999999976 7999999999999999986543 2334456778999999999998753 46789999
Q ss_pred CCeEEEEECCCC-eee-ee--eeecCCeeEEEECCC---C-----------CeEEEEcCCCcEEEEEcCCCeeeeee---
Q 026765 88 DKTVRLWDARSG-KCS-QQ--AELSGENINITYKPD---G-----------THIAVGNRDDELTILDVRKFKPIHRR--- 146 (233)
Q Consensus 88 d~~i~iwd~~~~-~~~-~~--~~~~~~~~~~~~~~~---~-----------~~l~~~~~d~~i~i~d~~~~~~~~~~--- 146 (233)
||.|.|.+.+.. ... .. ..+.-.+.+++|.|. | +.|++|+.|..++||+....+.....
T Consensus 125 DG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~ 204 (299)
T KOG1332|consen 125 DGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLE 204 (299)
T ss_pred CCcEEEEEEcCCCCccchhhhhccccccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhhhhhhh
Confidence 999999987654 211 11 111223445777765 3 57999999999999998765433222
Q ss_pred ecCceeeEEEECCCC----CEEEEEeCCCeEEEEecCC-cee--eeEEeeecCceeEEEECCCCCEEEEeeCCCcEEEEe
Q 026765 147 KFGYEVNEIAWNMTG----EMFFLTTGNGTVEVLTYPS-LRP--LDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWD 219 (233)
Q Consensus 147 ~~~~~~~~~~~~~~~----~~~~~~~~~~~v~~~~~~~-~~~--~~~~~~~~~~v~~i~~~p~~~~las~s~dg~v~iwd 219 (233)
.+..=+..++|.|.- .++++++.||++.||..+. .++ ...+......++.++||+.|+.|+.++.|++|++|.
T Consensus 205 ~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkvtlwk 284 (299)
T KOG1332|consen 205 GHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEPWKKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKVTLWK 284 (299)
T ss_pred hcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCccCcccccccccCCcceEEEEEeccccEEEEecCCcEEEEEE
Confidence 122337788998874 4688999999999997642 111 122233456789999999999999999999999997
Q ss_pred cC
Q 026765 220 IS 221 (233)
Q Consensus 220 ~~ 221 (233)
-+
T Consensus 285 e~ 286 (299)
T KOG1332|consen 285 EN 286 (299)
T ss_pred eC
Confidence 65
No 100
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=6e-25 Score=178.91 Aligned_cols=209 Identities=22% Similarity=0.351 Sum_probs=169.7
Q ss_pred CCccceeeeCccccEEEEEECcCC-CEEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeC
Q 026765 9 KNLHSREYTGHKKKVHSVAWNCTG-TKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASG 87 (233)
Q Consensus 9 ~~~~~~~~~~H~~~V~~~~~~~~~-~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~ 87 (233)
++.....|..|+..|+++.|++.. .+|+|||.||+||+||+..... ...+.+....|+++.|+|..++.++++..
T Consensus 122 rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S----~~t~~~nSESiRDV~fsp~~~~~F~s~~d 197 (839)
T KOG0269|consen 122 RNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKS----KSTFRSNSESIRDVKFSPGYGNKFASIHD 197 (839)
T ss_pred cchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccc----cccccccchhhhceeeccCCCceEEEecC
Confidence 344455789999999999999864 6899999999999999975321 22456788899999999999999999999
Q ss_pred CCeEEEEECCCCe-eeeee-eecCCeeEEEECCCCCeEEEEcCCCcEEEEEcCCC--eeeeeeecCceeeEEEECCCCCE
Q 026765 88 DKTVRLWDARSGK-CSQQA-ELSGENINITYKPDGTHIAVGNRDDELTILDVRKF--KPIHRRKFGYEVNEIAWNMTGEM 163 (233)
Q Consensus 88 d~~i~iwd~~~~~-~~~~~-~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 163 (233)
.|.+++||++... +...+ .+.+++.++.|+|++.+||+|+.|++++|||+... .+.+.+....++..+.|-|...+
T Consensus 198 sG~lqlWDlRqp~r~~~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~~~tInTiapv~rVkWRP~~~~ 277 (839)
T KOG0269|consen 198 SGYLQLWDLRQPDRCEKKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRAKPKHTINTIAPVGRVKWRPARSY 277 (839)
T ss_pred CceEEEeeccCchhHHHHhhcccCceEEEeecCCCceeeecCCCccEEEEeccCCCccceeEEeecceeeeeeeccCccc
Confidence 9999999998764 33333 34578899999999999999999999999998754 34556666788999999999887
Q ss_pred EEEEe---CCCeEEEEecC-CceeeeEEeeecCceeEEEECC-CCCEEEEeeCCCcEEEEecC
Q 026765 164 FFLTT---GNGTVEVLTYP-SLRPLDTVVAHTAGCYCIAIDP-MGRYFAVGSADSLVSLWDIS 221 (233)
Q Consensus 164 ~~~~~---~~~~v~~~~~~-~~~~~~~~~~~~~~v~~i~~~p-~~~~las~s~dg~v~iwd~~ 221 (233)
.++.+ .|-.|++||.+ ..-|..++..|...++.++|.. +...|.+++.||+|..-.++
T Consensus 278 hLAtcsmv~dtsV~VWDvrRPYIP~~t~~eH~~~vt~i~W~~~d~~~l~s~sKD~tv~qh~~k 340 (839)
T KOG0269|consen 278 HLATCSMVVDTSVHVWDVRRPYIPYATFLEHTDSVTGIAWDSGDRINLWSCSKDGTVLQHLFK 340 (839)
T ss_pred hhhhhhccccceEEEEeeccccccceeeeccCccccceeccCCCceeeEeecCccHHHHhhhh
Confidence 76554 48899999986 4567788899999999999965 34568899999988654443
No 101
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.93 E-value=2.2e-24 Score=166.05 Aligned_cols=208 Identities=22% Similarity=0.341 Sum_probs=163.0
Q ss_pred eCccccEEEEEECcCCC-EEEEEeCCCCEEEEecccCCCC------ceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCC
Q 026765 17 TGHKKKVHSVAWNCTGT-KLASGSVDQTARVWHIEPHGHG------KVKDIELRGHADSVDQLCWDPKHADLIATASGDK 89 (233)
Q Consensus 17 ~~H~~~V~~~~~~~~~~-~l~s~~~D~~v~vW~~~~~~~~------~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~ 89 (233)
-.|.+.|+.+.+-|+.. .+||++..+.|.|||...+... ....+.+.||...-++++|++.....|++|+.|+
T Consensus 121 i~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls~~~d~ 200 (422)
T KOG0264|consen 121 INHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLSGSDDH 200 (422)
T ss_pred ccCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecccccccccccccceeEeeccCCC
Confidence 46999999999999875 6677888999999998654321 1223478899998899999998888899999999
Q ss_pred eEEEEECCCCee-------eeeeeec-CCeeEEEECCC-CCeEEEEcCCCcEEEEEcCC--Ceeeeee-ecCceeeEEEE
Q 026765 90 TVRLWDARSGKC-------SQQAELS-GENINITYKPD-GTHIAVGNRDDELTILDVRK--FKPIHRR-KFGYEVNEIAW 157 (233)
Q Consensus 90 ~i~iwd~~~~~~-------~~~~~~~-~~~~~~~~~~~-~~~l~~~~~d~~i~i~d~~~--~~~~~~~-~~~~~~~~~~~ 157 (233)
.|++||+..... ...+..+ ..+..++|++. ...+++++.|+.+.|||+|+ .++.+.. .+..++++++|
T Consensus 201 ~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~~~~~~~~ah~~~vn~~~f 280 (422)
T KOG0264|consen 201 TICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTSKPSHSVKAHSAEVNCVAF 280 (422)
T ss_pred cEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCCCCcccccccCCceeEEEe
Confidence 999999975432 1112222 33456889885 45678999999999999995 3333332 34678999999
Q ss_pred CCCCCE-EEEEeCCCeEEEEecCCc-eeeeEEeeecCceeEEEECCCC-CEEEEeeCCCcEEEEecCCcE
Q 026765 158 NMTGEM-FFLTTGNGTVEVLTYPSL-RPLDTVVAHTAGCYCIAIDPMG-RYFAVGSADSLVSLWDISEML 224 (233)
Q Consensus 158 ~~~~~~-~~~~~~~~~v~~~~~~~~-~~~~~~~~~~~~v~~i~~~p~~-~~las~s~dg~v~iwd~~~~~ 224 (233)
+|-+.+ +++++.|+++.+||+++. +++.++.+|...|.+|.|+|.. ..||+++.|+.+.|||+.+..
T Consensus 281 np~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig 350 (422)
T KOG0264|consen 281 NPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIG 350 (422)
T ss_pred CCCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEeccccc
Confidence 987665 566778999999999864 5778899999999999999975 579999999999999997543
No 102
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.93 E-value=1.1e-25 Score=167.57 Aligned_cols=200 Identities=23% Similarity=0.331 Sum_probs=165.4
Q ss_pred eeeCccccEEEEEECcCCCEEEEEeCCCCEEEEecccCCCCceeeEEE-ecCcCcEEEEEEcCCCCCEEEEEeCCCeEEE
Q 026765 15 EYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIEL-RGHADSVDQLCWDPKHADLIATASGDKTVRL 93 (233)
Q Consensus 15 ~~~~H~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~-~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~i 93 (233)
.|.-|..+|.|+.|+.|..+||||+.||.|+||.+.+.. ++. ++ ++|+..|+++.|+.+++. ++|++.|.++++
T Consensus 258 ~fMMmd~aVlci~FSRDsEMlAsGsqDGkIKvWri~tG~--ClR--rFdrAHtkGvt~l~FSrD~Sq-iLS~sfD~tvRi 332 (508)
T KOG0275|consen 258 NFMMMDDAVLCISFSRDSEMLASGSQDGKIKVWRIETGQ--CLR--RFDRAHTKGVTCLSFSRDNSQ-ILSASFDQTVRI 332 (508)
T ss_pred ceeecccceEEEeecccHHHhhccCcCCcEEEEEEecch--HHH--HhhhhhccCeeEEEEccCcch-hhcccccceEEE
Confidence 356789999999999999999999999999999997532 221 23 479999999999998765 469999999999
Q ss_pred EECCCCeeeeeeeecCC-eeEEEECCCCCeEEEEcCCCcEEEEEcCCCeeeeeeecC-----------------------
Q 026765 94 WDARSGKCSQQAELSGE-NINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFG----------------------- 149 (233)
Q Consensus 94 wd~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~----------------------- 149 (233)
.-+..|++...+..+.. +....|.++|+++++++.|+++++|+..+.+.+...+..
T Consensus 333 HGlKSGK~LKEfrGHsSyvn~a~ft~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~PKnpeh~iVCN 412 (508)
T KOG0275|consen 333 HGLKSGKCLKEFRGHSSYVNEATFTDDGHHIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILLPKNPEHFIVCN 412 (508)
T ss_pred eccccchhHHHhcCccccccceEEcCCCCeEEEecCCccEEEecCcchhhhhhccCCCCcccceeEEEcCCCCceEEEEc
Confidence 99999998887765543 445889999999999999999999997654322111100
Q ss_pred -------------------------ceeeEEEECCCCCEEEEEeCCCeEEEEecCCceeeeEEeeecCceeEEEECCCCC
Q 026765 150 -------------------------YEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGR 204 (233)
Q Consensus 150 -------------------------~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~ 204 (233)
..--+...+|.|+++.+.++|+.++.+...++..-.++..|...|..++-+|..+
T Consensus 413 rsntv~imn~qGQvVrsfsSGkREgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG~LE~tl~VhEkdvIGl~HHPHqN 492 (508)
T KOG0275|consen 413 RSNTVYIMNMQGQVVRSFSSGKREGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSGKLERTLPVHEKDVIGLTHHPHQN 492 (508)
T ss_pred CCCeEEEEeccceEEeeeccCCccCCceEEEEecCCCcEEEEEccCcEEEEEEeecCceeeeeecccccccccccCcccc
Confidence 0011345688899999999999999999999999899999999999999999999
Q ss_pred EEEEeeCCCcEEEEe
Q 026765 205 YFAVGSADSLVSLWD 219 (233)
Q Consensus 205 ~las~s~dg~v~iwd 219 (233)
.||+-++||.+++|.
T Consensus 493 llAsYsEDgllKLWk 507 (508)
T KOG0275|consen 493 LLASYSEDGLLKLWK 507 (508)
T ss_pred hhhhhcccchhhhcC
Confidence 999999999999995
No 103
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.93 E-value=2.1e-25 Score=160.40 Aligned_cols=208 Identities=19% Similarity=0.300 Sum_probs=174.1
Q ss_pred eeeeCccccEEEEEECcCCCEEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCCeEEE
Q 026765 14 REYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRL 93 (233)
Q Consensus 14 ~~~~~H~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~i 93 (233)
-+|.||+++|+....+.+..+.||+++|-+-||||.-+... +. -..|+..|..++|+.+ .+.|++|+.++.+||
T Consensus 53 gtfeghkgavw~~~l~~na~~aasaaadftakvw~a~tgde--lh---sf~hkhivk~~af~~d-s~~lltgg~ekllrv 126 (334)
T KOG0278|consen 53 GTFEGHKGAVWSATLNKNATRAASAAADFTAKVWDAVTGDE--LH---SFEHKHIVKAVAFSQD-SNYLLTGGQEKLLRV 126 (334)
T ss_pred EeeeccCcceeeeecCchhhhhhhhcccchhhhhhhhhhhh--hh---hhhhhheeeeEEeccc-chhhhccchHHHhhh
Confidence 47899999999999999999999999999999999865321 11 2258888999999976 567789999999999
Q ss_pred EECCCCeeee-ee-eecCCeeEEEECCCCCeEEEEcCCCcEEEEEcCCCeeeeeeecCceeeEEEECCCCCEEEEEeCCC
Q 026765 94 WDARSGKCSQ-QA-ELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNG 171 (233)
Q Consensus 94 wd~~~~~~~~-~~-~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (233)
||++..+... .+ ...+.+..+.|....+.|++...|+.+++||.+++..++.+....+++++..+++|+++.++.+ +
T Consensus 127 fdln~p~App~E~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt~v~sL~~~s~VtSlEvs~dG~ilTia~g-s 205 (334)
T KOG0278|consen 127 FDLNRPKAPPKEISGHTGGIRTVLWCHEDKCILSSADDKTVRLWDHRTGTEVQSLEFNSPVTSLEVSQDGRILTIAYG-S 205 (334)
T ss_pred hhccCCCCCchhhcCCCCcceeEEEeccCceEEeeccCCceEEEEeccCcEEEEEecCCCCcceeeccCCCEEEEecC-c
Confidence 9998765322 22 2345566788888888999999999999999999999999999999999999999988777654 4
Q ss_pred eEEEEecCCceeeeEEeeecCceeEEEECCCCCEEEEeeCCCcEEEEecCCcEEEEee
Q 026765 172 TVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTF 229 (233)
Q Consensus 172 ~v~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~las~s~dg~v~iwd~~~~~~i~~~ 229 (233)
.|.+||..+...++.+. ..-.|.+.+++|+...+++|++|..++.||..+++.+-.|
T Consensus 206 sV~Fwdaksf~~lKs~k-~P~nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~ 262 (334)
T KOG0278|consen 206 SVKFWDAKSFGLLKSYK-MPCNVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSY 262 (334)
T ss_pred eeEEeccccccceeecc-CccccccccccCCCceEEecCcceEEEEEeccCCceeeec
Confidence 79999999888877654 3446789999999999999999999999999999887665
No 104
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=1.9e-24 Score=160.59 Aligned_cols=207 Identities=21% Similarity=0.322 Sum_probs=167.6
Q ss_pred cceeeeCccccEEEEEECcCCCEEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCCeE
Q 026765 12 HSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTV 91 (233)
Q Consensus 12 ~~~~~~~H~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i 91 (233)
..++|.||+..|+.++-......+.|++.|.+.+||.++... +...+.||.+.|+++.|++. +.++++|+.|++.
T Consensus 140 lvre~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~----CL~~Y~GH~GSVNsikfh~s-~~L~lTaSGD~ta 214 (481)
T KOG0300|consen 140 LVRELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGA----CLATYTGHTGSVNSIKFHNS-GLLLLTASGDETA 214 (481)
T ss_pred ehhhhcccccceeeehhhcCCcceeecccccceeEEeecccc----ceeeecccccceeeEEeccc-cceEEEccCCcch
Confidence 457899999999999988777899999999999999998643 45678999999999999986 4688999999999
Q ss_pred EEEE------CCCCe------------e----------------------eeeeeec-CCeeEEEECCCCCeEEEEcCCC
Q 026765 92 RLWD------ARSGK------------C----------------------SQQAELS-GENINITYKPDGTHIAVGNRDD 130 (233)
Q Consensus 92 ~iwd------~~~~~------------~----------------------~~~~~~~-~~~~~~~~~~~~~~l~~~~~d~ 130 (233)
+||. +.... + ...+..+ ..+.++.|...|..+++++.|.
T Consensus 215 HIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vTaSWDR 294 (481)
T KOG0300|consen 215 HIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVTASWDR 294 (481)
T ss_pred HHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhcCcceeeeeeccc
Confidence 9996 21100 0 0000001 1223455777889999999999
Q ss_pred cEEEEEcCCCeeeeeee-cCceeeEEEECCCCCEEEEEeCCCeEEEEecCCc-eeeeEEeeecCceeEEEECCCCCEEEE
Q 026765 131 ELTILDVRKFKPIHRRK-FGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSL-RPLDTVVAHTAGCYCIAIDPMGRYFAV 208 (233)
Q Consensus 131 ~i~i~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~~~~~~~~~v~~i~~~p~~~~las 208 (233)
+..+||++++++++.+. +..+.+.++-+|+.++++.++.|-+.++||++.. ..+..|.+|...|+++.|.-+ ..+++
T Consensus 295 TAnlwDVEtge~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFReaI~sV~VFQGHtdtVTS~vF~~d-d~vVS 373 (481)
T KOG0300|consen 295 TANLWDVETGEVVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREAIQSVAVFQGHTDTVTSVVFNTD-DRVVS 373 (481)
T ss_pred cceeeeeccCceeccccCcchhccccccCCcceEEEEeccCceeEeccchhhcceeeeecccccceeEEEEecC-Cceee
Confidence 99999999999887644 5678889999999999999999999999999743 456678899999999999865 57899
Q ss_pred eeCCCcEEEEecCCcE
Q 026765 209 GSADSLVSLWDISEML 224 (233)
Q Consensus 209 ~s~dg~v~iwd~~~~~ 224 (233)
||.|.+|+|||++.+.
T Consensus 374 gSDDrTvKvWdLrNMR 389 (481)
T KOG0300|consen 374 GSDDRTVKVWDLRNMR 389 (481)
T ss_pred cCCCceEEEeeecccc
Confidence 9999999999998664
No 105
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.92 E-value=1.1e-23 Score=150.39 Aligned_cols=207 Identities=21% Similarity=0.308 Sum_probs=157.2
Q ss_pred CCCCCccceeeeCccccEEEEEECcCCCEEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEE
Q 026765 6 IPFKNLHSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATA 85 (233)
Q Consensus 6 ~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg 85 (233)
.|.+...+++|.||...|..++.+.|+..+++|+.|+.|.+||+++.. ...++++|...|+.+.|+.+ ...++||
T Consensus 45 Np~rg~liktYsghG~EVlD~~~s~Dnskf~s~GgDk~v~vwDV~TGk----v~Rr~rgH~aqVNtV~fNee-sSVv~Sg 119 (307)
T KOG0316|consen 45 NPLRGALIKTYSGHGHEVLDAALSSDNSKFASCGGDKAVQVWDVNTGK----VDRRFRGHLAQVNTVRFNEE-SSVVASG 119 (307)
T ss_pred cccccceeeeecCCCceeeeccccccccccccCCCCceEEEEEcccCe----eeeecccccceeeEEEecCc-ceEEEec
Confidence 356666789999999999999999999999999999999999998643 23368999999999999975 5688899
Q ss_pred eCCCeEEEEECCCCe--eeeee---------------------------------------eecCCeeEEEECCCCCeEE
Q 026765 86 SGDKTVRLWDARSGK--CSQQA---------------------------------------ELSGENINITYKPDGTHIA 124 (233)
Q Consensus 86 ~~d~~i~iwd~~~~~--~~~~~---------------------------------------~~~~~~~~~~~~~~~~~l~ 124 (233)
+.|..+++||-+... +++.+ .+..++.++.|+++++..+
T Consensus 120 sfD~s~r~wDCRS~s~ePiQildea~D~V~Si~v~~heIvaGS~DGtvRtydiR~G~l~sDy~g~pit~vs~s~d~nc~L 199 (307)
T KOG0316|consen 120 SFDSSVRLWDCRSRSFEPIQILDEAKDGVSSIDVAEHEIVAGSVDGTVRTYDIRKGTLSSDYFGHPITSVSFSKDGNCSL 199 (307)
T ss_pred cccceeEEEEcccCCCCccchhhhhcCceeEEEecccEEEeeccCCcEEEEEeecceeehhhcCCcceeEEecCCCCEEE
Confidence 999999999976542 11110 0122445677888888888
Q ss_pred EEcCCCcEEEEEcCCCeeeeeeecCc---eeeEEEECCCCCEEEEEeCCCeEEEEecCCceeeeEEeeecCc-eeEEEEC
Q 026765 125 VGNRDDELTILDVRKFKPIHRRKFGY---EVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAHTAG-CYCIAID 200 (233)
Q Consensus 125 ~~~~d~~i~i~d~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~-v~~i~~~ 200 (233)
+++.|+.+++.|-.+++.+..++-.. --...+++.....++.+++||.+.+||+.+...+..+..+... |.+++++
T Consensus 200 a~~l~stlrLlDk~tGklL~sYkGhkn~eykldc~l~qsdthV~sgSEDG~Vy~wdLvd~~~~sk~~~~~~v~v~dl~~h 279 (307)
T KOG0316|consen 200 ASSLDSTLRLLDKETGKLLKSYKGHKNMEYKLDCCLNQSDTHVFSGSEDGKVYFWDLVDETQISKLSVVSTVIVTDLSCH 279 (307)
T ss_pred EeeccceeeecccchhHHHHHhcccccceeeeeeeecccceeEEeccCCceEEEEEeccceeeeeeccCCceeEEeeecc
Confidence 88888888888877766655444210 1223456666777889999999999999988888888877776 7899999
Q ss_pred CCCCEEEEeeCCCcEEEE
Q 026765 201 PMGRYFAVGSADSLVSLW 218 (233)
Q Consensus 201 p~~~~las~s~dg~v~iw 218 (233)
|.-.-|.++... .+..|
T Consensus 280 p~~~~f~~A~~~-~~~~~ 296 (307)
T KOG0316|consen 280 PTMDDFITATGH-GDLFW 296 (307)
T ss_pred cCccceeEecCC-ceece
Confidence 988777766533 34444
No 106
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.92 E-value=1.1e-23 Score=162.09 Aligned_cols=192 Identities=26% Similarity=0.470 Sum_probs=157.0
Q ss_pred CCEEEEEeCCCCEEEEecccCCCCceeeE------------------EEecCcCcEEEEEEcCCCCCEEEEEeCCCeEEE
Q 026765 32 GTKLASGSVDQTARVWHIEPHGHGKVKDI------------------ELRGHADSVDQLCWDPKHADLIATASGDKTVRL 93 (233)
Q Consensus 32 ~~~l~s~~~D~~v~vW~~~~~~~~~~~~~------------------~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~i 93 (233)
|+++|.|..|..|-|||+.-... ....+ .-.+|+++|.+++|+..-.++|+|||.|++|++
T Consensus 192 gNyvAiGtmdp~IeIWDLDI~d~-v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~l 270 (463)
T KOG0270|consen 192 GNYVAIGTMDPEIEIWDLDIVDA-VLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFRNVLASGSADKTVKL 270 (463)
T ss_pred cceEEEeccCceeEEeccccccc-cccceeechhhhhhhhhhcccccccccchHHHHHHHhccccceeEEecCCCceEEE
Confidence 67999999999999999853211 00111 123799999999999888899999999999999
Q ss_pred EECCCCeeeeeeee-cCCeeEEEECCC-CCeEEEEcCCCcEEEEEcCCCeee-eeeecCceeeEEEECCCCC-EEEEEeC
Q 026765 94 WDARSGKCSQQAEL-SGENINITYKPD-GTHIAVGNRDDELTILDVRKFKPI-HRRKFGYEVNEIAWNMTGE-MFFLTTG 169 (233)
Q Consensus 94 wd~~~~~~~~~~~~-~~~~~~~~~~~~-~~~l~~~~~d~~i~i~d~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~ 169 (233)
||+.++++...+.. .+.+.++.|+|. +.++++|+.|+++.+.|.|..... ...+....+..+.|++... .+++++.
T Consensus 271 WD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~~~wk~~g~VEkv~w~~~se~~f~~~td 350 (463)
T KOG0270|consen 271 WDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSGKEWKFDGEVEKVAWDPHSENSFFVSTD 350 (463)
T ss_pred EEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccCceEEeccceEEEEecCCCceeEEEecC
Confidence 99999999888874 466778999885 678899999999999999853222 2345567899999988764 5677889
Q ss_pred CCeEEEEecCCc-eeeeEEeeecCceeEEEECCCCC-EEEEeeCCCcEEEEecCCcE
Q 026765 170 NGTVEVLTYPSL-RPLDTVVAHTAGCYCIAIDPMGR-YFAVGSADSLVSLWDISEML 224 (233)
Q Consensus 170 ~~~v~~~~~~~~-~~~~~~~~~~~~v~~i~~~p~~~-~las~s~dg~v~iwd~~~~~ 224 (233)
||+++-+|.+.. +++.++..|..+|.++++++.-. +|++++.|+.|++|++....
T Consensus 351 dG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~ 407 (463)
T KOG0270|consen 351 DGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDS 407 (463)
T ss_pred CceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCCC
Confidence 999999999865 89999999999999999998764 68999999999999987543
No 107
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.92 E-value=1.4e-23 Score=162.07 Aligned_cols=201 Identities=22% Similarity=0.349 Sum_probs=158.5
Q ss_pred eCccccEEEEEECcCCCEEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCCeEEEEEC
Q 026765 17 TGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDA 96 (233)
Q Consensus 17 ~~H~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~iwd~ 96 (233)
.+|...|.+++.++||++||||+.|+.|.||+..+.. .+ ..+++|.+.|.+++|-. ++.-+++++.|..|++|++
T Consensus 199 ~~h~keil~~avS~Dgkylatgg~d~~v~Iw~~~t~e--hv--~~~~ghr~~V~~L~fr~-gt~~lys~s~Drsvkvw~~ 273 (479)
T KOG0299|consen 199 KGHVKEILTLAVSSDGKYLATGGRDRHVQIWDCDTLE--HV--KVFKGHRGAVSSLAFRK-GTSELYSASADRSVKVWSI 273 (479)
T ss_pred ccccceeEEEEEcCCCcEEEecCCCceEEEecCcccc--hh--hcccccccceeeeeeec-CccceeeeecCCceEEEeh
Confidence 3899999999999999999999999999999986532 22 24789999999999964 4566789999999999999
Q ss_pred CCCeeeeeeee-cCCeeEEEECCCCCeEEEEcCCCcEEEEEcCCCeeeeeeecCceeeEEEECCCCCEEEEEeCCCeEEE
Q 026765 97 RSGKCSQQAEL-SGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNGTVEV 175 (233)
Q Consensus 97 ~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 175 (233)
..-....++.. +..+..+....-.+.+.+|+.|.++++|++.....+........+.+++|- +..-+++|+.+|.|.+
T Consensus 274 ~~~s~vetlyGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~eesqlifrg~~~sidcv~~I-n~~HfvsGSdnG~IaL 352 (479)
T KOG0299|consen 274 DQLSYVETLYGHQDGVLGIDALSRERCVTVGGRDRTVRLWKIPEESQLIFRGGEGSIDCVAFI-NDEHFVSGSDNGSIAL 352 (479)
T ss_pred hHhHHHHHHhCCccceeeechhcccceEEeccccceeEEEeccccceeeeeCCCCCeeeEEEe-cccceeeccCCceEEE
Confidence 86554444333 344555655555677778889999999999544433333344467777774 5667899999999999
Q ss_pred EecCCceeeeEEe-eec-----------CceeEEEECCCCCEEEEeeCCCcEEEEecCCc
Q 026765 176 LTYPSLRPLDTVV-AHT-----------AGCYCIAIDPMGRYFAVGSADSLVSLWDISEM 223 (233)
Q Consensus 176 ~~~~~~~~~~~~~-~~~-----------~~v~~i~~~p~~~~las~s~dg~v~iwd~~~~ 223 (233)
|++...+++.... +|. ..|++++..|...++|+||.+|.|++|-+.++
T Consensus 353 Ws~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW~i~~g 412 (479)
T KOG0299|consen 353 WSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLWKIEDG 412 (479)
T ss_pred eeecccCceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEEEecCC
Confidence 9998777766543 232 37899999999999999999999999999887
No 108
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.92 E-value=2.4e-25 Score=180.05 Aligned_cols=210 Identities=22% Similarity=0.384 Sum_probs=180.9
Q ss_pred eeeeCccccEEEEEECcCCCEEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCCeEEE
Q 026765 14 REYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRL 93 (233)
Q Consensus 14 ~~~~~H~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~i 93 (233)
+++..|...|.++..-..+..+++|+.|..+-+|.+.... ....+.+|..+|.++.|++. ..+|++|+.+|+|++
T Consensus 22 ~~~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~----~i~S~~~hespIeSl~f~~~-E~LlaagsasgtiK~ 96 (825)
T KOG0267|consen 22 REFVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPN----AITSLTGHESPIESLTFDTS-ERLLAAGSASGTIKV 96 (825)
T ss_pred hhhhhhhhhhceeeeeccceeeccCCCceeeccccccCCc----hhheeeccCCcceeeecCcc-hhhhcccccCCceee
Confidence 4777899999999987778899999999999999875321 22357899999999999986 568899999999999
Q ss_pred EECCCCeeeeeeeec-CCeeEEEECCCCCeEEEEcCCCcEEEEEcCCCeeeeeee-cCceeeEEEECCCCCEEEEEeCCC
Q 026765 94 WDARSGKCSQQAELS-GENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRK-FGYEVNEIAWNMTGEMFFLTTGNG 171 (233)
Q Consensus 94 wd~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 171 (233)
||+...+..+.+..+ .....+.|+|-+.+.+.|+.|..+++||.+.....+.+. +...+..+.|+|+|++++.++.|.
T Consensus 97 wDleeAk~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~ 176 (825)
T KOG0267|consen 97 WDLEEAKIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKKGCSHTYKSHTRVVDVLRLSPDGRWVASGGEDN 176 (825)
T ss_pred eehhhhhhhhhhhccccCcceeeeccceEEeccccccccceehhhhccCceeeecCCcceeEEEeecCCCceeeccCCcc
Confidence 999988776665544 345678999999999999999999999999777766655 344688899999999999999999
Q ss_pred eEEEEecCCceeeeEEeeecCceeEEEECCCCCEEEEeeCCCcEEEEecCCcEEEEe
Q 026765 172 TVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRT 228 (233)
Q Consensus 172 ~v~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~las~s~dg~v~iwd~~~~~~i~~ 228 (233)
.+++||...++.+..|..|...+.++.|+|..-.+++||.|++|++||+++-+.|-.
T Consensus 177 tvki~d~~agk~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe~I~s 233 (825)
T KOG0267|consen 177 TVKIWDLTAGKLSKEFKSHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLETFEVISS 233 (825)
T ss_pred eeeeecccccccccccccccccccccccCchhhhhccCCCCceeeeeccceeEEeec
Confidence 999999999999999999999999999999998999999999999999997665543
No 109
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.92 E-value=8.1e-24 Score=159.23 Aligned_cols=210 Identities=19% Similarity=0.351 Sum_probs=164.0
Q ss_pred ceeeeCccccEEEEEECcCCCEEEEEeCCCCEEEEecccCC------------------------CC-ceeeE-------
Q 026765 13 SREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHG------------------------HG-KVKDI------- 60 (233)
Q Consensus 13 ~~~~~~H~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~------------------------~~-~~~~~------- 60 (233)
.++|..|.+.|+.|+++. ..++|+|.|++||.|-++... .+ .+..+
T Consensus 102 ~~~f~AH~G~V~Gi~v~~--~~~~tvgdDKtvK~wk~~~~p~~tilg~s~~~gIdh~~~~~~FaTcGe~i~IWD~~R~~P 179 (433)
T KOG0268|consen 102 IRTFKAHEGLVRGICVTQ--TSFFTVGDDKTVKQWKIDGPPLHTILGKSVYLGIDHHRKNSVFATCGEQIDIWDEQRDNP 179 (433)
T ss_pred hheeecccCceeeEEecc--cceEEecCCcceeeeeccCCcceeeeccccccccccccccccccccCceeeecccccCCc
Confidence 467889999999999976 889999999999999742110 00 00000
Q ss_pred --EEecCcCcEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeeeeecCCeeEEEECCCCCeEEEEcCCCcEEEEEcC
Q 026765 61 --ELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRDDELTILDVR 138 (233)
Q Consensus 61 --~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~ 138 (233)
.+.--.+.+.++.|+|....+|++|+.|+.|.+||+++..+............++|+|.+-.+.++.+|..+..+|++
T Consensus 180 v~smswG~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi~~mRTN~IswnPeafnF~~a~ED~nlY~~DmR 259 (433)
T KOG0268|consen 180 VSSMSWGADSISSVKFNPVETSILASCASDRSIVLYDLRQASPLKKVILTMRTNTICWNPEAFNFVAANEDHNLYTYDMR 259 (433)
T ss_pred cceeecCCCceeEEecCCCcchheeeeccCCceEEEecccCCccceeeeeccccceecCccccceeeccccccceehhhh
Confidence 111223567888899988889999999999999999999888877777777789999988889999999999999998
Q ss_pred CCee-eeee-ecCceeeEEEECCCCCEEEEEeCCCeEEEEecCCceeeeEE-eeecCceeEEEECCCCCEEEEeeCCCcE
Q 026765 139 KFKP-IHRR-KFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTV-VAHTAGCYCIAIDPMGRYFAVGSADSLV 215 (233)
Q Consensus 139 ~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~~~~~~v~~i~~~p~~~~las~s~dg~v 215 (233)
..+. +... .+...+.+++|+|.|+-+++|+-|.+|+||....+.+-..+ ..--..|.|+.||.|.+|+++||.|+.|
T Consensus 260 ~l~~p~~v~~dhvsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRdiYhtkRMq~V~~Vk~S~Dskyi~SGSdd~nv 339 (433)
T KOG0268|consen 260 NLSRPLNVHKDHVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRDIYHTKRMQHVFCVKYSMDSKYIISGSDDGNV 339 (433)
T ss_pred hhcccchhhcccceeEEEeccCCCcchhccccccceEEEeecCCCcchhhhhHhhhheeeEEEEeccccEEEecCCCcce
Confidence 7543 3222 24457899999999999999999999999988655432221 1122468999999999999999999999
Q ss_pred EEEecCCcE
Q 026765 216 SLWDISEML 224 (233)
Q Consensus 216 ~iwd~~~~~ 224 (233)
++|...-.+
T Consensus 340 RlWka~Ase 348 (433)
T KOG0268|consen 340 RLWKAKASE 348 (433)
T ss_pred eeeecchhh
Confidence 999986443
No 110
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.92 E-value=4.9e-23 Score=155.73 Aligned_cols=213 Identities=20% Similarity=0.333 Sum_probs=164.1
Q ss_pred CCCccceeeeCccccEEEEEECcCCC--EEEEEeCCCCEEEEecccCCC------------CceeeEEEecCcCcEEEEE
Q 026765 8 FKNLHSREYTGHKKKVHSVAWNCTGT--KLASGSVDQTARVWHIEPHGH------------GKVKDIELRGHADSVDQLC 73 (233)
Q Consensus 8 ~~~~~~~~~~~H~~~V~~~~~~~~~~--~l~s~~~D~~v~vW~~~~~~~------------~~~~~~~~~~h~~~v~~~~ 73 (233)
++++..+.. +|.+.++.+.-++.++ +.|+-+..|.|+||++.+.-. .......+.+|...-+.++
T Consensus 140 ~P~~~~~~i-~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~Ld 218 (440)
T KOG0302|consen 140 KPQIEMKSI-PHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLD 218 (440)
T ss_pred ccccccccc-ccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeee
Confidence 344443333 5888888888877654 556667899999999753210 0112345778999999999
Q ss_pred EcCCCCCEEEEEeCCCeEEEEECCCCeeee---eee-ecCCeeEEEECCCC-CeEEEEcCCCcEEEEEcCCCe---eeee
Q 026765 74 WDPKHADLIATASGDKTVRLWDARSGKCSQ---QAE-LSGENINITYKPDG-THIAVGNRDDELTILDVRKFK---PIHR 145 (233)
Q Consensus 74 ~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~---~~~-~~~~~~~~~~~~~~-~~l~~~~~d~~i~i~d~~~~~---~~~~ 145 (233)
|+|.....|+||..-+.|++|...++.... .+. ....+..++|+|.. ..|++|+-|++|+|||+|... .+..
T Consensus 219 WSp~~~g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~~~ 298 (440)
T KOG0302|consen 219 WSPIKTGRLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAVST 298 (440)
T ss_pred cccccccccccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCccceeEe
Confidence 999665667899888999999988876432 121 23345569999964 578899999999999999863 3344
Q ss_pred eecCceeeEEEECCCCCEEEEEeCCCeEEEEecCC---ceeeeEEeeecCceeEEEECCCC-CEEEEeeCCCcEEEEecC
Q 026765 146 RKFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPS---LRPLDTVVAHTAGCYCIAIDPMG-RYFAVGSADSLVSLWDIS 221 (233)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~~~~~~~~~~~~v~~i~~~p~~-~~las~s~dg~v~iwd~~ 221 (233)
..++..|+.++|+..-.++++|+.||+++|||++. ++++..|.-|..+|++|.|+|.. ..|++++.|..|.|||+.
T Consensus 299 kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDls 378 (440)
T KOG0302|consen 299 KAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLS 378 (440)
T ss_pred eccCCceeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEee
Confidence 45677899999999988999999999999999975 45778899999999999999965 568899999999999986
No 111
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.92 E-value=3.2e-24 Score=167.63 Aligned_cols=200 Identities=21% Similarity=0.299 Sum_probs=171.9
Q ss_pred eeeCccccEEEEEECcCCCEEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCCeEEEE
Q 026765 15 EYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLW 94 (233)
Q Consensus 15 ~~~~H~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~iw 94 (233)
++..-.-..++++.+||.+..++++.||.|+|||+..+ +....++||++.+.|+.+++++.++ -+|+-|.+||.|
T Consensus 504 eltssapaCyALa~spDakvcFsccsdGnI~vwDLhnq----~~VrqfqGhtDGascIdis~dGtkl-WTGGlDntvRcW 578 (705)
T KOG0639|consen 504 ELTSSAPACYALAISPDAKVCFSCCSDGNIAVWDLHNQ----TLVRQFQGHTDGASCIDISKDGTKL-WTGGLDNTVRCW 578 (705)
T ss_pred hcCCcchhhhhhhcCCccceeeeeccCCcEEEEEcccc----eeeecccCCCCCceeEEecCCCcee-ecCCCccceeeh
Confidence 34444567889999999999999999999999999642 2345789999999999999987665 599999999999
Q ss_pred ECCCCeeeeeeeecCCeeEEEECCCCCeEEEEcCCCcEEEEEcCCCeeeeeeecCceeeEEEECCCCCEEEEEeCCCeEE
Q 026765 95 DARSGKCSQQAELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNGTVE 174 (233)
Q Consensus 95 d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 174 (233)
|+++++..+...+...++++.++|++.++++|.+++.+.+......+....-.+..-|.++.|.+.|+++++.+.|+.+.
T Consensus 579 DlregrqlqqhdF~SQIfSLg~cP~~dWlavGMens~vevlh~skp~kyqlhlheScVLSlKFa~cGkwfvStGkDnlLn 658 (705)
T KOG0639|consen 579 DLREGRQLQQHDFSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSKPEKYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLN 658 (705)
T ss_pred hhhhhhhhhhhhhhhhheecccCCCccceeeecccCcEEEEecCCccceeecccccEEEEEEecccCceeeecCchhhhh
Confidence 99999988888888899999999999999999999999988876655544445566789999999999999999999999
Q ss_pred EEecCCceeeeEEeeecCceeEEEECCCCCEEEEeeCCCcEEEEec
Q 026765 175 VLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDI 220 (233)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~las~s~dg~v~iwd~ 220 (233)
.|..+-+..+.... ..+.|.++.+|-++++++|||.|.+..||.+
T Consensus 659 awrtPyGasiFqsk-E~SsVlsCDIS~ddkyIVTGSGdkkATVYeV 703 (705)
T KOG0639|consen 659 AWRTPYGASIFQSK-ESSSVLSCDISFDDKYIVTGSGDKKATVYEV 703 (705)
T ss_pred hccCccccceeecc-ccCcceeeeeccCceEEEecCCCcceEEEEE
Confidence 99987777665433 4568999999999999999999999999865
No 112
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.91 E-value=1.9e-23 Score=160.71 Aligned_cols=205 Identities=24% Similarity=0.452 Sum_probs=161.0
Q ss_pred eCccccEEEEEECcC-CCEEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCCeEEEEE
Q 026765 17 TGHKKKVHSVAWNCT-GTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWD 95 (233)
Q Consensus 17 ~~H~~~V~~~~~~~~-~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~iwd 95 (233)
.+|+.+|.+++|+.. .+.|||||.|.+|++||++.... ...+..|...|.+++|+|..+.+|++|+.|++|.+.|
T Consensus 240 ~gHTdavl~Ls~n~~~~nVLaSgsaD~TV~lWD~~~g~p----~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D 315 (463)
T KOG0270|consen 240 SGHTDAVLALSWNRNFRNVLASGSADKTVKLWDVDTGKP----KSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKD 315 (463)
T ss_pred ccchHHHHHHHhccccceeEEecCCCceEEEEEcCCCCc----ceehhhcCCceeEEEecCCCceEEEeccccceEEeee
Confidence 479999999999976 56899999999999999986432 2245578999999999999999999999999999999
Q ss_pred CCCC-eeeeeeeecCCeeEEEECCCC-CeEEEEcCCCcEEEEEcCCC-eeeeeee-cCceeeEEEECCCC-CEEEEEeCC
Q 026765 96 ARSG-KCSQQAELSGENINITYKPDG-THIAVGNRDDELTILDVRKF-KPIHRRK-FGYEVNEIAWNMTG-EMFFLTTGN 170 (233)
Q Consensus 96 ~~~~-~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~d~~i~i~d~~~~-~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~ 170 (233)
.|.. .....+.+.+.+..++|.|.. ..++++..||.++-+|+|+. +++...+ +..+|.+++++..- .++++++.+
T Consensus 316 ~R~~~~s~~~wk~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d 395 (463)
T KOG0270|consen 316 CRDPSNSGKEWKFDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTD 395 (463)
T ss_pred ccCccccCceEEeccceEEEEecCCCceeEEEecCCceEEeeecCCCCCceeEEEeccCCcceEEecCCCCcceeecccc
Confidence 9953 334566778888899998865 45678889999999999986 6666554 56789999887654 457778899
Q ss_pred CeEEEEecCCceeeeEEeeec---CceeEEEECCCCC-EEEEeeCCCcEEEEecCCcEEE
Q 026765 171 GTVEVLTYPSLRPLDTVVAHT---AGCYCIAIDPMGR-YFAVGSADSLVSLWDISEMLCV 226 (233)
Q Consensus 171 ~~v~~~~~~~~~~~~~~~~~~---~~v~~i~~~p~~~-~las~s~dg~v~iwd~~~~~~i 226 (233)
+.+++|++....+-.. ..|. +...|.++.|+-. +||.|+..+.++|||+.+...+
T Consensus 396 ~~Vklw~~~~~~~~~v-~~~~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~~V 454 (463)
T KOG0270|consen 396 KVVKLWKFDVDSPKSV-KEHSFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTNSPV 454 (463)
T ss_pred ceEEEEeecCCCCccc-ccccccccceeecccCCCcceEEEecCccceEEEeecccChhH
Confidence 9999999864433111 1121 2345778888765 5788888899999999877654
No 113
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.91 E-value=9.9e-23 Score=150.08 Aligned_cols=191 Identities=23% Similarity=0.381 Sum_probs=143.3
Q ss_pred eeeeCccccEEEEEECcCCCEEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCC-CCEEEEEeCCCeEE
Q 026765 14 REYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKH-ADLIATASGDKTVR 92 (233)
Q Consensus 14 ~~~~~H~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~~l~sg~~d~~i~ 92 (233)
+....|.++|.+++|+.||..+++|+.|+.+++||+... +..++..|..+|..+.|-+.. ..+|++|++|++|+
T Consensus 66 ka~~~~~~PvL~v~WsddgskVf~g~~Dk~~k~wDL~S~-----Q~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlK 140 (347)
T KOG0647|consen 66 KAQQSHDGPVLDVCWSDDGSKVFSGGCDKQAKLWDLASG-----QVSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLK 140 (347)
T ss_pred hhhhccCCCeEEEEEccCCceEEeeccCCceEEEEccCC-----CeeeeeecccceeEEEEecCCCcceeEeccccccee
Confidence 344579999999999999999999999999999999753 233567899999999997643 24789999999999
Q ss_pred EEECCCCeeeeeeeecCCeeE------------------------------------------EEECCCCCeEEEEcCCC
Q 026765 93 LWDARSGKCSQQAELSGENIN------------------------------------------ITYKPDGTHIAVGNRDD 130 (233)
Q Consensus 93 iwd~~~~~~~~~~~~~~~~~~------------------------------------------~~~~~~~~~l~~~~~d~ 130 (233)
.||.+....+.+..+....++ ++..++....+.|+-.|
T Consensus 141 fWD~R~~~pv~t~~LPeRvYa~Dv~~pm~vVata~r~i~vynL~n~~te~k~~~SpLk~Q~R~va~f~d~~~~alGsiEG 220 (347)
T KOG0647|consen 141 FWDTRSSNPVATLQLPERVYAADVLYPMAVVATAERHIAVYNLENPPTEFKRIESPLKWQTRCVACFQDKDGFALGSIEG 220 (347)
T ss_pred ecccCCCCeeeeeeccceeeehhccCceeEEEecCCcEEEEEcCCCcchhhhhcCcccceeeEEEEEecCCceEeeeecc
Confidence 999998776665555443332 33333444445555555
Q ss_pred cEEEEEcCCCeeeeeee---c---------CceeeEEEECCCCCEEEEEeCCCeEEEEecCCceeeeEEeeecCceeEEE
Q 026765 131 ELTILDVRKFKPIHRRK---F---------GYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAHTAGCYCIA 198 (233)
Q Consensus 131 ~i~i~d~~~~~~~~~~~---~---------~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~i~ 198 (233)
++.+-.+....+..... + -+.|++++|+|....+++.++||+..+||-+....+++...|..+|+|.+
T Consensus 221 rv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar~kLk~s~~~~qpItcc~ 300 (347)
T KOG0647|consen 221 RVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDARTKLKTSETHPQPITCCS 300 (347)
T ss_pred eEEEEecCCCCccCceeEEEeccCCCCCCceEEecceEeecccceEEEecCCceEEEecchhhhhhhccCcCCCccceeE
Confidence 55554443321111110 0 13578899999999999999999999999887778888888999999999
Q ss_pred ECCCCCEEEEe
Q 026765 199 IDPMGRYFAVG 209 (233)
Q Consensus 199 ~~p~~~~las~ 209 (233)
|+.+|.++|-+
T Consensus 301 fn~~G~ifaYA 311 (347)
T KOG0647|consen 301 FNRNGSIFAYA 311 (347)
T ss_pred ecCCCCEEEEE
Confidence 99999988744
No 114
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.91 E-value=2.1e-22 Score=155.77 Aligned_cols=202 Identities=19% Similarity=0.281 Sum_probs=169.8
Q ss_pred cccEEEEEECcCCCEEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCCeEEEEECCCC
Q 026765 20 KKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSG 99 (233)
Q Consensus 20 ~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~iwd~~~~ 99 (233)
.++|+++.|+|....|++|+.|++++||.++......++.+.+ ...+|.+.+|.|+|...+++++..+.+..||+.+.
T Consensus 213 ~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l--~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~a 290 (514)
T KOG2055|consen 213 HGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHL--EKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETA 290 (514)
T ss_pred cCCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeee--ccCccceeeecCCCceEEEecccceEEEEeecccc
Confidence 6789999999999999999999999999998655555555544 35689999999998768889999999999999887
Q ss_pred eeeeeeeecC----CeeEEEECCCCCeEEEEcCCCcEEEEEcCCCeeeeeeecCceeeEEEECCCCCEEEEEeCCCeEEE
Q 026765 100 KCSQQAELSG----ENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNGTVEV 175 (233)
Q Consensus 100 ~~~~~~~~~~----~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 175 (233)
+........+ .......+|++++|+..+..|.|.+....+.+.+...+....+..+.|+.+++.+++.+++|.|.+
T Consensus 291 k~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT~eli~s~KieG~v~~~~fsSdsk~l~~~~~~GeV~v 370 (514)
T KOG2055|consen 291 KVTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKTKELITSFKIEGVVSDFTFSSDSKELLASGGTGEVYV 370 (514)
T ss_pred ccccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhhhhhhheeeeccEEeeEEEecCCcEEEEEcCCceEEE
Confidence 6543222211 223467799999999999999999999999999999998889999999999999999999999999
Q ss_pred EecCCceeeeEEeeecC-ceeEEEECCCCCEEEEeeCCCcEEEEecCCc
Q 026765 176 LTYPSLRPLDTVVAHTA-GCYCIAIDPMGRYFAVGSADSLVSLWDISEM 223 (233)
Q Consensus 176 ~~~~~~~~~~~~~~~~~-~v~~i~~~p~~~~las~s~dg~v~iwd~~~~ 223 (233)
||++...++..+...+. .-++++.++++.|||+||..|.|.|||.++.
T Consensus 371 ~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~ 419 (514)
T KOG2055|consen 371 WNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSC 419 (514)
T ss_pred EecCCcceEEEEeecCccceeeeeecCCCceEEeccCcceEEEeccchh
Confidence 99998888877764332 2367888999999999999999999997654
No 115
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.91 E-value=9.8e-25 Score=176.59 Aligned_cols=194 Identities=23% Similarity=0.379 Sum_probs=167.6
Q ss_pred eeeCccccEEEEEECcCCCEEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCCeEEEE
Q 026765 15 EYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLW 94 (233)
Q Consensus 15 ~~~~H~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~iw 94 (233)
.|.+|..+|.+|.|+++...|+.|+.||+||+||++... ....+.||...+.++.|+|-+ .+.++|+.|..+++|
T Consensus 65 S~~~hespIeSl~f~~~E~LlaagsasgtiK~wDleeAk----~vrtLtgh~~~~~sv~f~P~~-~~~a~gStdtd~~iw 139 (825)
T KOG0267|consen 65 SLTGHESPIESLTFDTSERLLAAGSASGTIKVWDLEEAK----IVRTLTGHLLNITSVDFHPYG-EFFASGSTDTDLKIW 139 (825)
T ss_pred eeeccCCcceeeecCcchhhhcccccCCceeeeehhhhh----hhhhhhccccCcceeeeccce-EEeccccccccceeh
Confidence 488999999999999999999999999999999998532 122577999999999999975 567899999999999
Q ss_pred ECCCCeeeeeeeecCC-eeEEEECCCCCeEEEEcCCCcEEEEEcCCCeeeeeee-cCceeeEEEECCCCCEEEEEeCCCe
Q 026765 95 DARSGKCSQQAELSGE-NINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRK-FGYEVNEIAWNMTGEMFFLTTGNGT 172 (233)
Q Consensus 95 d~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (233)
|++...|......+.. +..+.|+|+|++++++++|..+++||+..++....++ +...+..+.++|..-+++.|+.|++
T Consensus 140 D~Rk~Gc~~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~~~ef~~~e~~v~sle~hp~e~Lla~Gs~d~t 219 (825)
T KOG0267|consen 140 DIRKKGCSHTYKSHTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTAGKLSKEFKSHEGKVQSLEFHPLEVLLAPGSSDRT 219 (825)
T ss_pred hhhccCceeeecCCcceeEEEeecCCCceeeccCCcceeeeecccccccccccccccccccccccCchhhhhccCCCCce
Confidence 9997778776654433 3457999999999999999999999998888777666 5567888889998888999999999
Q ss_pred EEEEecCCceeeeEEeeecCceeEEEECCCCCEEEEeeCCC
Q 026765 173 VEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADS 213 (233)
Q Consensus 173 v~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~las~s~dg 213 (233)
+++||+++.+.+........+|.+.+|+|+++.+++|..+.
T Consensus 220 v~f~dletfe~I~s~~~~~~~v~~~~fn~~~~~~~~G~q~s 260 (825)
T KOG0267|consen 220 VRFWDLETFEVISSGKPETDGVRSLAFNPDGKIVLSGEQIS 260 (825)
T ss_pred eeeeccceeEEeeccCCccCCceeeeecCCceeeecCchhh
Confidence 99999999998888777788999999999999999887664
No 116
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.91 E-value=1.8e-22 Score=153.57 Aligned_cols=218 Identities=21% Similarity=0.385 Sum_probs=168.2
Q ss_pred eeeeCccccEEEEEECcCC-CEEEEEeCCCCEEEEecccCCCCc---eeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCC
Q 026765 14 REYTGHKKKVHSVAWNCTG-TKLASGSVDQTARVWHIEPHGHGK---VKDIELRGHADSVDQLCWDPKHADLIATASGDK 89 (233)
Q Consensus 14 ~~~~~H~~~V~~~~~~~~~-~~l~s~~~D~~v~vW~~~~~~~~~---~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~ 89 (233)
..+.||+++|..++|+|.+ ..+||||.|.+|+||++....... -...++.||...|.-++|||.-.++|+|++.|.
T Consensus 75 P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn 154 (472)
T KOG0303|consen 75 PLVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDN 154 (472)
T ss_pred CCccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCc
Confidence 3568999999999999975 568999999999999985432211 124578899999999999999899999999999
Q ss_pred eEEEEECCCCeeeeeeeecCCeeEEEECCCCCeEEEEcCCCcEEEEEcCCCeeeeeee-c-CceeeEEEECCCCCEEEEE
Q 026765 90 TVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRK-F-GYEVNEIAWNMTGEMFFLT 167 (233)
Q Consensus 90 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~ 167 (233)
+|.+||+.++.....+.+...++++.|+.+|.++++.+.|++|+|||.++.+.+.... + +.....+.|-.+++.+.+|
T Consensus 155 ~v~iWnv~tgeali~l~hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~i~tTG 234 (472)
T KOG0303|consen 155 TVSIWNVGTGEALITLDHPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGKIFTTG 234 (472)
T ss_pred eEEEEeccCCceeeecCCCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEeccCceeeec
Confidence 9999999999887777767778899999999999999999999999999998887652 2 3345566777788855544
Q ss_pred e---CCCeEEEEecCCce-eeeEEe-eecCceeEEEECCCCCEEE-EeeCCCcEEEEecCCcE----EEEeeec
Q 026765 168 T---GNGTVEVLTYPSLR-PLDTVV-AHTAGCYCIAIDPMGRYFA-VGSADSLVSLWDISEML----CVRTFTK 231 (233)
Q Consensus 168 ~---~~~~v~~~~~~~~~-~~~~~~-~~~~~v~~i~~~p~~~~la-s~s~dg~v~iwd~~~~~----~i~~~~~ 231 (233)
- .+.++.+||....+ ++.... ...++|.-=-|+|+...+. +|-.|+.||-|.+.... .+.+|+.
T Consensus 235 fsr~seRq~aLwdp~nl~eP~~~~elDtSnGvl~PFyD~dt~ivYl~GKGD~~IRYyEit~d~P~~hyln~f~S 308 (472)
T KOG0303|consen 235 FSRMSERQIALWDPNNLEEPIALQELDTSNGVLLPFYDPDTSIVYLCGKGDSSIRYFEITNEPPFVHYLNTFSS 308 (472)
T ss_pred cccccccceeccCcccccCcceeEEeccCCceEEeeecCCCCEEEEEecCCcceEEEEecCCCceeEEeccccc
Confidence 3 46889999876533 322211 2344555556788887764 56679999999997654 3555553
No 117
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.90 E-value=2e-22 Score=149.82 Aligned_cols=208 Identities=23% Similarity=0.360 Sum_probs=163.6
Q ss_pred cceeeeCccccEEEEEECcCCCEEEEEeCCCCEEEEecc-----cC----------------------------C---CC
Q 026765 12 HSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIE-----PH----------------------------G---HG 55 (233)
Q Consensus 12 ~~~~~~~H~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~-----~~----------------------------~---~~ 55 (233)
+...|.||.+.|++++|++++.+++|++.|++..||... +. . .-
T Consensus 182 CL~~Y~GH~GSVNsikfh~s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~ti 261 (481)
T KOG0300|consen 182 CLATYTGHTGSVNSIKFHNSGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTI 261 (481)
T ss_pred ceeeecccccceeeEEeccccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCcee
Confidence 345799999999999999999999999999999999620 00 0 00
Q ss_pred ceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeeeeecCC-eeEEEECCCCCeEEEEcCCCcEEE
Q 026765 56 KVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGE-NINITYKPDGTHIAVGNRDDELTI 134 (233)
Q Consensus 56 ~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~d~~i~i 134 (233)
++...++.+|...|.+..|-.. +..+++|++|.+..+||++++.....+..+.. ..-++-+|..+.+++.+.|.+.++
T Consensus 262 RvPl~~ltgH~~vV~a~dWL~g-g~Q~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcstHptQrLVvTsSrDtTFRL 340 (481)
T KOG0300|consen 262 RVPLMRLTGHRAVVSACDWLAG-GQQMVTASWDRTANLWDVETGEVVNILTGHDSELTHCSTHPTQRLVVTSSRDTTFRL 340 (481)
T ss_pred eeeeeeeeccccceEehhhhcC-cceeeeeeccccceeeeeccCceeccccCcchhccccccCCcceEEEEeccCceeEe
Confidence 2234568899999999999764 45678999999999999999998887765533 344777899999999999999999
Q ss_pred EEcCCC-eeeeeee-cCceeeEEEECCCCCEEEEEeCCCeEEEEecCCcee-eeEEeeecCceeEEEECCCCCEEEEeeC
Q 026765 135 LDVRKF-KPIHRRK-FGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRP-LDTVVAHTAGCYCIAIDPMGRYFAVGSA 211 (233)
Q Consensus 135 ~d~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~~~~~v~~i~~~p~~~~las~s~ 211 (233)
||.+.. ..+...+ +...++++.|..+ ..+++++.|.++++||+++++. +.++. -.++++-++.+..++.+|.--.
T Consensus 341 WDFReaI~sV~VFQGHtdtVTS~vF~~d-d~vVSgSDDrTvKvWdLrNMRsplATIR-tdS~~NRvavs~g~~iIAiPhD 418 (481)
T KOG0300|consen 341 WDFREAIQSVAVFQGHTDTVTSVVFNTD-DRVVSGSDDRTVKVWDLRNMRSPLATIR-TDSPANRVAVSKGHPIIAIPHD 418 (481)
T ss_pred ccchhhcceeeeecccccceeEEEEecC-CceeecCCCceEEEeeeccccCcceeee-cCCccceeEeecCCceEEeccC
Confidence 999732 2222222 3346888888754 5688999999999999987664 44433 5678899999998889999999
Q ss_pred CCcEEEEecCC
Q 026765 212 DSLVSLWDISE 222 (233)
Q Consensus 212 dg~v~iwd~~~ 222 (233)
++.|++||++-
T Consensus 419 NRqvRlfDlnG 429 (481)
T KOG0300|consen 419 NRQVRLFDLNG 429 (481)
T ss_pred CceEEEEecCC
Confidence 99999999983
No 118
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.90 E-value=4.4e-22 Score=153.86 Aligned_cols=216 Identities=16% Similarity=0.222 Sum_probs=171.9
Q ss_pred ceeeeCccccEEEEEECcCCCEEEEEeCCCCEEEEecccCCCC--cee----------eEEE--ecCcCcEEEEEEcCCC
Q 026765 13 SREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHG--KVK----------DIEL--RGHADSVDQLCWDPKH 78 (233)
Q Consensus 13 ~~~~~~H~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~--~~~----------~~~~--~~h~~~v~~~~~~~~~ 78 (233)
+..+..|.-+|.+++++|++++.++++.|++|.-|++...... .+. ..+. ++|...+.+++.++++
T Consensus 135 ~~~~~~H~~s~~~vals~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS~Dg 214 (479)
T KOG0299|consen 135 FRVIGKHQLSVTSVALSPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVSSDG 214 (479)
T ss_pred ceeeccccCcceEEEeeccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEcCCC
Confidence 3566789999999999999999999999999999998653311 000 0111 3788999999999985
Q ss_pred CCEEEEEeCCCeEEEEECCCCeeeeeeeec-CCeeEEEECCCCCeEEEEcCCCcEEEEEcCCCeeeee-eecCceeeEEE
Q 026765 79 ADLIATASGDKTVRLWDARSGKCSQQAELS-GENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHR-RKFGYEVNEIA 156 (233)
Q Consensus 79 ~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~-~~~~~~~~~~~ 156 (233)
++|++|+.|..|.|||.++.+..+.+..+ +.+.+++|....+.+++++.|..+.+|++.....+.. +-+...+..+.
T Consensus 215 -kylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~gt~~lys~s~Drsvkvw~~~~~s~vetlyGHqd~v~~Id 293 (479)
T KOG0299|consen 215 -KYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRKGTSELYSASADRSVKVWSIDQLSYVETLYGHQDGVLGID 293 (479)
T ss_pred -cEEEecCCCceEEEecCcccchhhcccccccceeeeeeecCccceeeeecCCceEEEehhHhHHHHHHhCCccceeeec
Confidence 68899999999999999998766665544 5677899988888999999999999999876554432 22334566666
Q ss_pred ECCCCCEEEEEeCCCeEEEEecCCceeeeEEeeecCceeEEEECCCCCEEEEeeCCCcEEEEecCCcEEEEeeec
Q 026765 157 WNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTK 231 (233)
Q Consensus 157 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~las~s~dg~v~iwd~~~~~~i~~~~~ 231 (233)
--...+.+.+|+.|.++++|..+. +....+.+|.+.+-|++|-. ..++++||.||.|.+|++....++-++..
T Consensus 294 aL~reR~vtVGgrDrT~rlwKi~e-esqlifrg~~~sidcv~~In-~~HfvsGSdnG~IaLWs~~KKkplf~~~~ 366 (479)
T KOG0299|consen 294 ALSRERCVTVGGRDRTVRLWKIPE-ESQLIFRGGEGSIDCVAFIN-DEHFVSGSDNGSIALWSLLKKKPLFTSRL 366 (479)
T ss_pred hhcccceEEeccccceeEEEeccc-cceeeeeCCCCCeeeEEEec-ccceeeccCCceEEEeeecccCceeEeec
Confidence 556677788888999999999843 44556788988999999965 57999999999999999999988877653
No 119
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.90 E-value=5.7e-22 Score=166.85 Aligned_cols=206 Identities=21% Similarity=0.330 Sum_probs=161.2
Q ss_pred eeeeCccccEEEEEECcCCCEEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCCeEEE
Q 026765 14 REYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRL 93 (233)
Q Consensus 14 ~~~~~H~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~i 93 (233)
..|.+|.+.|..++|+|++.+|||+|.|++|.||+.... . ....+.+|...|-.+.|+|.| ++|+|-+.|++|+|
T Consensus 123 ~~l~~H~~DV~Dv~Wsp~~~~lvS~s~DnsViiwn~~tF--~--~~~vl~~H~s~VKGvs~DP~G-ky~ASqsdDrtikv 197 (942)
T KOG0973|consen 123 SILRGHDSDVLDVNWSPDDSLLVSVSLDNSVIIWNAKTF--E--LLKVLRGHQSLVKGVSWDPIG-KYFASQSDDRTLKV 197 (942)
T ss_pred EEEecCCCccceeccCCCccEEEEecccceEEEEccccc--e--eeeeeecccccccceEECCcc-CeeeeecCCceEEE
Confidence 568899999999999999999999999999999998754 2 233578999999999999986 68899999999999
Q ss_pred EECCCCeeeeeeee-------cCCeeEEEECCCCCeEEEEcC----CCcEEEEEcCCCeeeee-eecCceeeEEEECCC-
Q 026765 94 WDARSGKCSQQAEL-------SGENINITYKPDGTHIAVGNR----DDELTILDVRKFKPIHR-RKFGYEVNEIAWNMT- 160 (233)
Q Consensus 94 wd~~~~~~~~~~~~-------~~~~~~~~~~~~~~~l~~~~~----d~~i~i~d~~~~~~~~~-~~~~~~~~~~~~~~~- 160 (233)
|.+.+..+...... ......+.|+|||++|++... -..+.|.+-.+++.-.. .-+..++.++.|+|.
T Consensus 198 wrt~dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk~~~~LvGH~~p~evvrFnP~l 277 (942)
T KOG0973|consen 198 WRTSDWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWKVDKDLVGHSAPVEVVRFNPKL 277 (942)
T ss_pred EEcccceeeEeeccchhhCCCcceeeecccCCCcCeecchhhccCCcceeEEEecCCceeeeeeecCCCceEEEEeChHH
Confidence 99766554443221 122356899999999997653 23577777655553332 335557888888762
Q ss_pred ------------CC----EEEEEeCCCeEEEEecCCceeeeEEe-eecCceeEEEECCCCCEEEEeeCCCcEEEEecCCc
Q 026765 161 ------------GE----MFFLTTGNGTVEVLTYPSLRPLDTVV-AHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEM 223 (233)
Q Consensus 161 ------------~~----~~~~~~~~~~v~~~~~~~~~~~~~~~-~~~~~v~~i~~~p~~~~las~s~dg~v~iwd~~~~ 223 (233)
.+ .+++|+.|+.+.||.....+|+.... -....|..++|+|||..|..+|.||+|.+..+.+.
T Consensus 278 fe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~vi~~lf~~SI~DmsWspdG~~LfacS~DGtV~~i~Fee~ 357 (942)
T KOG0973|consen 278 FERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLFVIHNLFNKSIVDMSWSPDGFSLFACSLDGTVALIHFEEK 357 (942)
T ss_pred hccccccCCccCCCcceEEEEEecCCccEEEEecCCCCchhhhhhhhcCceeeeeEcCCCCeEEEEecCCeEEEEEcchH
Confidence 11 56788999999999988777765432 24568999999999999999999999999998865
Q ss_pred E
Q 026765 224 L 224 (233)
Q Consensus 224 ~ 224 (233)
+
T Consensus 358 E 358 (942)
T KOG0973|consen 358 E 358 (942)
T ss_pred H
Confidence 3
No 120
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.90 E-value=1.8e-21 Score=155.70 Aligned_cols=206 Identities=21% Similarity=0.374 Sum_probs=165.3
Q ss_pred ccccEEEEEECcCCCEEEEEeCCCCEEEEecccCCCCceeeEEEec-CcCcEEEEEEcCCCCCEEEEEeCCCeEEEEECC
Q 026765 19 HKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRG-HADSVDQLCWDPKHADLIATASGDKTVRLWDAR 97 (233)
Q Consensus 19 H~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~-h~~~v~~~~~~~~~~~~l~sg~~d~~i~iwd~~ 97 (233)
+.+.|+++.|+++|.+||.|..+|.|.|||..... .+. .+.+ |...|.+++|. ...+.+|+.|+.|..+|++
T Consensus 216 ~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~k--~~~--~~~~~h~~rvg~laW~---~~~lssGsr~~~I~~~dvR 288 (484)
T KOG0305|consen 216 GEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQK--KTR--TLRGSHASRVGSLAWN---SSVLSSGSRDGKILNHDVR 288 (484)
T ss_pred CCCceEEEEECCCCCEEEEeecCCeEEEEehhhcc--ccc--cccCCcCceeEEEecc---CceEEEecCCCcEEEEEEe
Confidence 38899999999999999999999999999987532 222 3455 99999999997 3578899999999999999
Q ss_pred CCeeeee-eeec-CCeeEEEECCCCCeEEEEcCCCcEEEEEcCCCeeeee-eecCceeeEEEECCCCC-EEEEEe--CCC
Q 026765 98 SGKCSQQ-AELS-GENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHR-RKFGYEVNEIAWNMTGE-MFFLTT--GNG 171 (233)
Q Consensus 98 ~~~~~~~-~~~~-~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~--~~~ 171 (233)
..+.... ...+ .++-.+.|++|+.++++|+.|+.+.|||....++... ..+...|-.++|+|-.. .+++|+ .|+
T Consensus 289 ~~~~~~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p~~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~ 368 (484)
T KOG0305|consen 289 ISQHVVSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEPKFTFTEHTAAVKALAWCPWQSGLLATGGGSADR 368 (484)
T ss_pred cchhhhhhhhcccceeeeeEECCCCCeeccCCCccceEeccCCCccccEEEeccceeeeEeeeCCCccCceEEcCCCccc
Confidence 8764433 3333 3455589999999999999999999999966555544 44667899999999754 555553 589
Q ss_pred eEEEEecCCceeeeEEeeecCceeEEEECCCCCEEEE--eeCCCcEEEEecCCcEEEEeeecC
Q 026765 172 TVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAV--GSADSLVSLWDISEMLCVRTFTKL 232 (233)
Q Consensus 172 ~v~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~las--~s~dg~v~iwd~~~~~~i~~~~~~ 232 (233)
.+++|+..+++.+..+. -...|.++.|++..+-|++ |-.++.|.||+..+...+..+.+|
T Consensus 369 ~i~fwn~~~g~~i~~vd-tgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~l~gH 430 (484)
T KOG0305|consen 369 CIKFWNTNTGARIDSVD-TGSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLVAELLGH 430 (484)
T ss_pred EEEEEEcCCCcEecccc-cCCceeeEEEcCCCCEEEEecCCCCCcEEEEeccccceeeeecCC
Confidence 99999999888887654 4567899999998866554 446788999999998888887765
No 121
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.90 E-value=2.5e-20 Score=145.32 Aligned_cols=211 Identities=14% Similarity=0.182 Sum_probs=153.0
Q ss_pred ceeeeCccccEEEEEECcCCCEE-EEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCCeE
Q 026765 13 SREYTGHKKKVHSVAWNCTGTKL-ASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTV 91 (233)
Q Consensus 13 ~~~~~~H~~~V~~~~~~~~~~~l-~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i 91 (233)
.+.+.+|. .+.+++|+|+++.+ ++++.|+.|++||..... . ...+..+.. +..++|+|++..++++++.|+.+
T Consensus 24 ~~~~~~~~-~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~---~-~~~~~~~~~-~~~~~~~~~g~~l~~~~~~~~~l 97 (300)
T TIGR03866 24 TRTFPVGQ-RPRGITLSKDGKLLYVCASDSDTIQVIDLATGE---V-IGTLPSGPD-PELFALHPNGKILYIANEDDNLV 97 (300)
T ss_pred EEEEECCC-CCCceEECCCCCEEEEEECCCCeEEEEECCCCc---E-EEeccCCCC-ccEEEECCCCCEEEEEcCCCCeE
Confidence 34555554 46789999999976 677789999999986421 1 112333333 46788999876565666778999
Q ss_pred EEEECCCCeeeeeeeecCCeeEEEECCCCCeEEEEcCCC-cEEEEEcCCCeeeeeeecCceeeEEEECCCCCEEEEEe-C
Q 026765 92 RLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRDD-ELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTT-G 169 (233)
Q Consensus 92 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~-~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~ 169 (233)
++||+++.+....+........++++|++.+++++..++ .+.+||.++.+.............+.|+++++.+++++ .
T Consensus 98 ~~~d~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~s~dg~~l~~~~~~ 177 (300)
T TIGR03866 98 TVIDIETRKVLAEIPVGVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVLVDQRPRFAEFTADGKELWVSSEI 177 (300)
T ss_pred EEEECCCCeEEeEeeCCCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEEcCCCccEEEECCCCCEEEEEcCC
Confidence 999999877666555444456799999999999888765 46778988776655444445567889999999886654 5
Q ss_pred CCeEEEEecCCceeeeEEeeec-----C--ceeEEEECCCCCEEEE-eeCCCcEEEEecCCcEEEEee
Q 026765 170 NGTVEVLTYPSLRPLDTVVAHT-----A--GCYCIAIDPMGRYFAV-GSADSLVSLWDISEMLCVRTF 229 (233)
Q Consensus 170 ~~~v~~~~~~~~~~~~~~~~~~-----~--~v~~i~~~p~~~~las-~s~dg~v~iwd~~~~~~i~~~ 229 (233)
++.+.+||..+.+.+..+..+. . ....++|+|++++++. .+.++.+.+||+++++.++.+
T Consensus 178 ~~~v~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~~~~ 245 (300)
T TIGR03866 178 GGTVSVIDVATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYEVLDYL 245 (300)
T ss_pred CCEEEEEEcCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEE
Confidence 8999999998887766554321 1 2346889999998544 455678999999988877654
No 122
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.90 E-value=3.3e-23 Score=175.12 Aligned_cols=212 Identities=17% Similarity=0.308 Sum_probs=165.6
Q ss_pred cccEEEEEECcCCCE----EEEEeCCCCEEEEecccC--CCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCCeEEE
Q 026765 20 KKKVHSVAWNCTGTK----LASGSVDQTARVWHIEPH--GHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRL 93 (233)
Q Consensus 20 ~~~V~~~~~~~~~~~----l~s~~~D~~v~vW~~~~~--~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~i 93 (233)
...-+.|+|.+.|.. +|.|..||.|-+|+...- +...........|.+.|..+.|++..+++|+||+.||.|.|
T Consensus 64 ~~rF~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~i 143 (1049)
T KOG0307|consen 64 SNRFNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILI 143 (1049)
T ss_pred cccceeeeecccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEE
Confidence 456789999988776 888889999999998652 21111122456799999999999999899999999999999
Q ss_pred EECCCCeeeeee---eecCCeeEEEECCCC-CeEEEEcCCCcEEEEEcCCCeeeeeeecC---ceeeEEEECCCCC-EEE
Q 026765 94 WDARSGKCSQQA---ELSGENINITYKPDG-THIAVGNRDDELTILDVRKFKPIHRRKFG---YEVNEIAWNMTGE-MFF 165 (233)
Q Consensus 94 wd~~~~~~~~~~---~~~~~~~~~~~~~~~-~~l~~~~~d~~i~i~d~~~~~~~~~~~~~---~~~~~~~~~~~~~-~~~ 165 (233)
||+...+..... .....+.+++|+..- +.|++++.++++.|||+|..+++...... ..+..+.|||++- .++
T Consensus 144 WDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~ 223 (1049)
T KOG0307|consen 144 WDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLL 223 (1049)
T ss_pred eccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccccCCCccceeeeeeCCCCceeee
Confidence 999875433222 234567788997654 56778889999999999988776554432 3477899999975 355
Q ss_pred EEeCC---CeEEEEecCC-ceeeeEEeeecCceeEEEECCCC-CEEEEeeCCCcEEEEecCCcEEEEeeec
Q 026765 166 LTTGN---GTVEVLTYPS-LRPLDTVVAHTAGCYCIAIDPMG-RYFAVGSADSLVSLWDISEMLCVRTFTK 231 (233)
Q Consensus 166 ~~~~~---~~v~~~~~~~-~~~~~~~~~~~~~v~~i~~~p~~-~~las~s~dg~v~iwd~~~~~~i~~~~~ 231 (233)
++++| -.|.+||++. ..+.+.+.+|..+|.+++|++.+ ++|++++.|+.|.+||.++++.+.+|..
T Consensus 224 ~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~ 294 (1049)
T KOG0307|consen 224 VASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPA 294 (1049)
T ss_pred eecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCceEeeecCC
Confidence 55544 5788899763 45777888999999999999987 7899999999999999999999988753
No 123
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.90 E-value=6.4e-22 Score=149.76 Aligned_cols=206 Identities=20% Similarity=0.393 Sum_probs=155.3
Q ss_pred cceeeeCccccEEEEEECcCC-CEEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCCe
Q 026765 12 HSREYTGHKKKVHSVAWNCTG-TKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKT 90 (233)
Q Consensus 12 ~~~~~~~H~~~V~~~~~~~~~-~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~ 90 (233)
+..++.+|.+.=++|+|||-- ..|+||..-+.|++|.+.. +.-.+-...+.+|+..|-.++|+|....+|+||+.|++
T Consensus 203 Pl~t~~ghk~EGy~LdWSp~~~g~LlsGDc~~~I~lw~~~~-g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~Dgs 281 (440)
T KOG0302|consen 203 PLFTFNGHKGEGYGLDWSPIKTGRLLSGDCVKGIHLWEPST-GSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGS 281 (440)
T ss_pred ceEEecccCccceeeecccccccccccCccccceEeeeecc-CceeecCccccccccchhhhccCCccCceEEeeecCce
Confidence 446889999999999999954 4588999899999999865 22223334567899999999999999999999999999
Q ss_pred EEEEECCCCe---eeeeeeecCCeeEEEECCCCCeEEEEcCCCcEEEEEcCCCee---eee-eecCceeeEEEECCCCC-
Q 026765 91 VRLWDARSGK---CSQQAELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKP---IHR-RKFGYEVNEIAWNMTGE- 162 (233)
Q Consensus 91 i~iwd~~~~~---~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~---~~~-~~~~~~~~~~~~~~~~~- 162 (233)
|+|||+|.+. ++....+.+.+..+.|+..-..|++|+.||.+.|||+|+.+. +-. ..+..+|+++.|+|...
T Consensus 282 IrIWDiRs~~~~~~~~~kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s 361 (440)
T KOG0302|consen 282 IRIWDIRSGPKKAAVSTKAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDS 361 (440)
T ss_pred EEEEEecCCCccceeEeeccCCceeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCc
Confidence 9999999883 333333445566689988877999999999999999997653 333 34577899999998754
Q ss_pred EEEEEeCCCeEEEEecCCce----------------eeeEEeee--cCceeEEEECCCCC-EEEEeeCCCcEEEEe
Q 026765 163 MFFLTTGNGTVEVLTYPSLR----------------PLDTVVAH--TAGCYCIAIDPMGR-YFAVGSADSLVSLWD 219 (233)
Q Consensus 163 ~~~~~~~~~~v~~~~~~~~~----------------~~~~~~~~--~~~v~~i~~~p~~~-~las~s~dg~v~iwd 219 (233)
.+++++.|.++.+||+..-. +-+.+-.| ...+..+.|+++-. +|++.+.|| +.||.
T Consensus 362 ~iaasg~D~QitiWDlsvE~D~ee~~~~a~~~L~dlPpQLLFVHqGQke~KevhWH~QiPG~lvsTa~dG-fnVfk 436 (440)
T KOG0302|consen 362 VIAASGEDNQITIWDLSVEADEEEIDQEAAEGLQDLPPQLLFVHQGQKEVKEVHWHRQIPGLLVSTAIDG-FNVFK 436 (440)
T ss_pred eEEeccCCCcEEEEEeeccCChhhhccccccchhcCCceeEEEecchhHhhhheeccCCCCeEEEecccc-eeEEE
Confidence 56777889999999973110 01112234 34577889998754 677777787 45543
No 124
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.90 E-value=9.7e-23 Score=159.43 Aligned_cols=208 Identities=18% Similarity=0.305 Sum_probs=173.3
Q ss_pred ccccEEEEEECcCCCEEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCCeEEEEECCC
Q 026765 19 HKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARS 98 (233)
Q Consensus 19 H~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~iwd~~~ 98 (233)
..+-|+++...|||.-|++|+.-.+|.|||+.... .++ ..++..-.-.++.++.+|+ .++++++..||.|.|||+++
T Consensus 464 rdnyiRSckL~pdgrtLivGGeastlsiWDLAapT-pri-kaeltssapaCyALa~spD-akvcFsccsdGnI~vwDLhn 540 (705)
T KOG0639|consen 464 RDNYIRSCKLLPDGRTLIVGGEASTLSIWDLAAPT-PRI-KAELTSSAPACYALAISPD-AKVCFSCCSDGNIAVWDLHN 540 (705)
T ss_pred cccceeeeEecCCCceEEeccccceeeeeeccCCC-cch-hhhcCCcchhhhhhhcCCc-cceeeeeccCCcEEEEEccc
Confidence 35668899999999999999999999999996532 222 2345444456888999997 57888999999999999999
Q ss_pred Ceeeeeeeec-CCeeEEEECCCCCeEEEEcCCCcEEEEEcCCCeeeeeeecCceeeEEEECCCCCEEEEEeCCCeEEEEe
Q 026765 99 GKCSQQAELS-GENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNGTVEVLT 177 (233)
Q Consensus 99 ~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 177 (233)
...++.+..+ ....|+.++++|..|.+|+-|.+++.||++..+......+...|.++..+|+++.+++|-+++.+.+..
T Consensus 541 q~~VrqfqGhtDGascIdis~dGtklWTGGlDntvRcWDlregrqlqqhdF~SQIfSLg~cP~~dWlavGMens~vevlh 620 (705)
T KOG0639|consen 541 QTLVRQFQGHTDGASCIDISKDGTKLWTGGLDNTVRCWDLREGRQLQQHDFSSQIFSLGYCPTGDWLAVGMENSNVEVLH 620 (705)
T ss_pred ceeeecccCCCCCceeEEecCCCceeecCCCccceeehhhhhhhhhhhhhhhhhheecccCCCccceeeecccCcEEEEe
Confidence 8888877654 445678999999999999999999999999988877777778899999999999999999999999987
Q ss_pred cCCceeeeEEeeecCceeEEEECCCCCEEEEeeCCCcEEEEecCCcEEEEeee
Q 026765 178 YPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFT 230 (233)
Q Consensus 178 ~~~~~~~~~~~~~~~~v~~i~~~p~~~~las~s~dg~v~iwd~~~~~~i~~~~ 230 (233)
....+. ..+..|.+.|.++.|.+.|+++++.+.|..+..|...-|..|-...
T Consensus 621 ~skp~k-yqlhlheScVLSlKFa~cGkwfvStGkDnlLnawrtPyGasiFqsk 672 (705)
T KOG0639|consen 621 TSKPEK-YQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSK 672 (705)
T ss_pred cCCccc-eeecccccEEEEEEecccCceeeecCchhhhhhccCccccceeecc
Confidence 654333 3456789999999999999999999999999999987666554433
No 125
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.89 E-value=1e-20 Score=156.95 Aligned_cols=204 Identities=16% Similarity=0.289 Sum_probs=159.7
Q ss_pred CccccEEEEEECcCCCEEEEEeCCCCEEEEecccC-CCCc---------------------------eeeEEE-------
Q 026765 18 GHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPH-GHGK---------------------------VKDIEL------- 62 (233)
Q Consensus 18 ~H~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~-~~~~---------------------------~~~~~~------- 62 (233)
+|+..-+.|+|.|+|+.+++++.||.||+|+.... .... +....+
T Consensus 11 aht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~~s~~f~~~s~~~tv~~y~fps~~~~~ 90 (933)
T KOG1274|consen 11 AHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIACYSNHFLTGSEQNTVLRYKFPSGEEDT 90 (933)
T ss_pred hccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEeecccceEEeeccceEEEeeCCCCCccc
Confidence 69999999999999999999999999999986432 1000 000111
Q ss_pred --ecCcCcEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeeee-ecCCeeEEEECCCCCeEEEEcCCCcEEEEEcCC
Q 026765 63 --RGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAE-LSGENINITYKPDGTHIAVGNRDDELTILDVRK 139 (233)
Q Consensus 63 --~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~ 139 (233)
..-+-++++++++.+ +++++.||.|-.|++-++........+. +..++.++.|+|+++.||+.+-||.+.+||+..
T Consensus 91 iL~Rftlp~r~~~v~g~-g~~iaagsdD~~vK~~~~~D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw~~~~ 169 (933)
T KOG1274|consen 91 ILARFTLPIRDLAVSGS-GKMIAAGSDDTAVKLLNLDDSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQD 169 (933)
T ss_pred eeeeeeccceEEEEecC-CcEEEeecCceeEEEEeccccchheeecccCCceeeeeEcCCCCEEEEEecCceEEEEEccc
Confidence 112346778888875 4678888999999998887665444443 456778899999999999999999999999976
Q ss_pred Ceeeeeeec---------CceeeEEEECCCCCEEEEEeCCCeEEEEecCCceeeeEEee--ecCceeEEEECCCCCEEEE
Q 026765 140 FKPIHRRKF---------GYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVA--HTAGCYCIAIDPMGRYFAV 208 (233)
Q Consensus 140 ~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~--~~~~v~~i~~~p~~~~las 208 (233)
....+...- ...+..++|+|++..+++...++.|++|+...++....+.. +...+.+++|+|+|+|||+
T Consensus 170 ~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPnG~YiAA 249 (933)
T KOG1274|consen 170 GILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSPNGKYIAA 249 (933)
T ss_pred chhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeecccccccceEEEEEcCCCcEEee
Confidence 554332221 23467789999999999999999999999999988888764 3444788999999999999
Q ss_pred eeCCCcEEEEecCC
Q 026765 209 GSADSLVSLWDISE 222 (233)
Q Consensus 209 ~s~dg~v~iwd~~~ 222 (233)
++.||.|.|||.++
T Consensus 250 s~~~g~I~vWnv~t 263 (933)
T KOG1274|consen 250 STLDGQILVWNVDT 263 (933)
T ss_pred eccCCcEEEEeccc
Confidence 99999999999995
No 126
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.89 E-value=2.9e-20 Score=132.48 Aligned_cols=202 Identities=21% Similarity=0.369 Sum_probs=160.0
Q ss_pred eeeeCccccEEEEEECcC----CCEEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEE-EEcCCCCCEEEEEeCC
Q 026765 14 REYTGHKKKVHSVAWNCT----GTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQL-CWDPKHADLIATASGD 88 (233)
Q Consensus 14 ~~~~~H~~~V~~~~~~~~----~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~-~~~~~~~~~l~sg~~d 88 (233)
-+|.-|.+.|..++|-.+ +..|+|++. |..+||-.+.+..... .-+.||++.|.++ .|+ +-++++|++|
T Consensus 130 le~nmhdgtirdl~fld~~~s~~~il~s~ga-gdc~iy~tdc~~g~~~--~a~sghtghilalyswn---~~m~~sgsqd 203 (350)
T KOG0641|consen 130 LEFNMHDGTIRDLAFLDDPESGGAILASAGA-GDCKIYITDCGRGQGF--HALSGHTGHILALYSWN---GAMFASGSQD 203 (350)
T ss_pred eeeeecCCceeeeEEecCCCcCceEEEecCC-CcceEEEeecCCCCcc--eeecCCcccEEEEEEec---CcEEEccCCC
Confidence 468889999999999532 457888774 4445554444332222 2478999999877 454 4689999999
Q ss_pred CeEEEEECCCCeeeeeeee--------cCCeeEEEECCCCCeEEEEcCCCcEEEEEcCCCeeeeee-ecCceeeEEEECC
Q 026765 89 KTVRLWDARSGKCSQQAEL--------SGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRR-KFGYEVNEIAWNM 159 (233)
Q Consensus 89 ~~i~iwd~~~~~~~~~~~~--------~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~-~~~~~~~~~~~~~ 159 (233)
++|++||++-..++..... +..+..++..|.|+.+++|..|....+||++..+.++.+ ++..++.++.|+|
T Consensus 204 ktirfwdlrv~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~dssc~lydirg~r~iq~f~phsadir~vrfsp 283 (350)
T KOG0641|consen 204 KTIRFWDLRVNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYDIRGGRMIQRFHPHSADIRCVRFSP 283 (350)
T ss_pred ceEEEEeeeccceeeeccCcccCCCcccceeEEEEECCCcceeeeccCCCceEEEEeeCCceeeeeCCCccceeEEEeCC
Confidence 9999999998877665432 123456899999999999999999999999999988774 4567899999999
Q ss_pred CCCEEEEEeCCCeEEEEecCC----ceeeeEEeeecCceeEEEECCCCCEEEEeeCCCcEEEEecC
Q 026765 160 TGEMFFLTTGNGTVEVLTYPS----LRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDIS 221 (233)
Q Consensus 160 ~~~~~~~~~~~~~v~~~~~~~----~~~~~~~~~~~~~v~~i~~~p~~~~las~s~dg~v~iwd~~ 221 (233)
.-.++++++-|..|++-|+.- .-++.....|...+..+.|+|+.--+++.|.|.++.+|-++
T Consensus 284 ~a~yllt~syd~~ikltdlqgdla~el~~~vv~ehkdk~i~~rwh~~d~sfisssadkt~tlwa~~ 349 (350)
T KOG0641|consen 284 GAHYLLTCSYDMKIKLTDLQGDLAHELPIMVVAEHKDKAIQCRWHPQDFSFISSSADKTATLWALN 349 (350)
T ss_pred CceEEEEecccceEEEeecccchhhcCceEEEEeccCceEEEEecCccceeeeccCcceEEEeccC
Confidence 999999999999999998752 12344455688899999999999889999999999999764
No 127
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.89 E-value=3.8e-20 Score=144.25 Aligned_cols=193 Identities=15% Similarity=0.165 Sum_probs=144.9
Q ss_pred CCEEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeeeeecCCe
Q 026765 32 GTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGEN 111 (233)
Q Consensus 32 ~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~ 111 (233)
++.++|++.|+.|++||+.... .. ..+..+. .+..++|+|++..++++++.++.|++||..+++....+......
T Consensus 1 ~~~~~s~~~d~~v~~~d~~t~~--~~--~~~~~~~-~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~~~ 75 (300)
T TIGR03866 1 EKAYVSNEKDNTISVIDTATLE--VT--RTFPVGQ-RPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVIGTLPSGPDP 75 (300)
T ss_pred CcEEEEecCCCEEEEEECCCCc--eE--EEEECCC-CCCceEECCCCCEEEEEECCCCeEEEEECCCCcEEEeccCCCCc
Confidence 3578899999999999986422 22 2344443 36679999987656677888999999999988766555444445
Q ss_pred eEEEECCCCCeEEEE-cCCCcEEEEEcCCCeeeeeeecCceeeEEEECCCCCEEEEEeCCC-eEEEEecCCceeeeEEee
Q 026765 112 INITYKPDGTHIAVG-NRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNG-TVEVLTYPSLRPLDTVVA 189 (233)
Q Consensus 112 ~~~~~~~~~~~l~~~-~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~~~~~~ 189 (233)
..+.++|+++.++++ ..++.+.+||+++.+.+.....+..+..+.|+|+++.++++..++ .+.+|+..+.+....+.
T Consensus 76 ~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~~~~~~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~~- 154 (300)
T TIGR03866 76 ELFALHPNGKILYIANEDDNLVTVIDIETRKVLAEIPVGVEPEGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNVL- 154 (300)
T ss_pred cEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEeeCCCCcceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEEE-
Confidence 678899999987655 567899999998877666555555678899999999999888764 56677887766654433
Q ss_pred ecCceeEEEECCCCCEEEE-eeCCCcEEEEecCCcEEEEeee
Q 026765 190 HTAGCYCIAIDPMGRYFAV-GSADSLVSLWDISEMLCVRTFT 230 (233)
Q Consensus 190 ~~~~v~~i~~~p~~~~las-~s~dg~v~iwd~~~~~~i~~~~ 230 (233)
....+.+++|+|++++|+. +..++.|++||++++++++++.
T Consensus 155 ~~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~ 196 (300)
T TIGR03866 155 VDQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKIT 196 (300)
T ss_pred cCCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeee
Confidence 3345678999999998854 4569999999999998877653
No 128
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.89 E-value=2.4e-21 Score=156.47 Aligned_cols=197 Identities=23% Similarity=0.300 Sum_probs=153.9
Q ss_pred cceeeeCccccEEEEEECcCCCEEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCCeE
Q 026765 12 HSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTV 91 (233)
Q Consensus 12 ~~~~~~~H~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i 91 (233)
+..++.||...|.|+.-..++. |+|||+|.++|||.... ....+.+|...|-+++.-|.+ .++||+.|++|
T Consensus 93 P~~~LkgH~snVC~ls~~~~~~-~iSgSWD~TakvW~~~~------l~~~l~gH~asVWAv~~l~e~--~~vTgsaDKtI 163 (745)
T KOG0301|consen 93 PLYTLKGHKSNVCSLSIGEDGT-LISGSWDSTAKVWRIGE------LVYSLQGHTASVWAVASLPEN--TYVTGSADKTI 163 (745)
T ss_pred chhhhhccccceeeeecCCcCc-eEecccccceEEecchh------hhcccCCcchheeeeeecCCC--cEEeccCccee
Confidence 3356789999999999888888 99999999999997642 223588999999999999875 56799999999
Q ss_pred EEEECCCCeeeeeeeecC-CeeEEEECCCCCeEEEEcCCCcEEEEEcCCCeeeeeeecCceeeEEEECCCCCEEEEEeCC
Q 026765 92 RLWDARSGKCSQQAELSG-ENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGN 170 (233)
Q Consensus 92 ~iwd~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (233)
++|.- +++.+++..+. -+..+++.+++ .+++++.||.|+.|++.........-+..-+.+++...++..+++.++|
T Consensus 164 klWk~--~~~l~tf~gHtD~VRgL~vl~~~-~flScsNDg~Ir~w~~~ge~l~~~~ghtn~vYsis~~~~~~~Ivs~gED 240 (745)
T KOG0301|consen 164 KLWKG--GTLLKTFSGHTDCVRGLAVLDDS-HFLSCSNDGSIRLWDLDGEVLLEMHGHTNFVYSISMALSDGLIVSTGED 240 (745)
T ss_pred eeccC--CchhhhhccchhheeeeEEecCC-CeEeecCCceEEEEeccCceeeeeeccceEEEEEEecCCCCeEEEecCC
Confidence 99986 45556555443 34567777664 6789999999999999543333333344568888878889999999999
Q ss_pred CeEEEEecCCceeeeEEeeecCceeEEEECCCCCEEEEeeCCCcEEEEecCCc
Q 026765 171 GTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEM 223 (233)
Q Consensus 171 ~~v~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~las~s~dg~v~iwd~~~~ 223 (233)
+++++|+.. ++...+.-....|+++.+-++|. +++|+.||.||||-....
T Consensus 241 rtlriW~~~--e~~q~I~lPttsiWsa~~L~NgD-Ivvg~SDG~VrVfT~~k~ 290 (745)
T KOG0301|consen 241 RTLRIWKKD--ECVQVITLPTTSIWSAKVLLNGD-IVVGGSDGRVRVFTVDKD 290 (745)
T ss_pred ceEEEeecC--ceEEEEecCccceEEEEEeeCCC-EEEeccCceEEEEEeccc
Confidence 999999976 55555554455899999888776 577889999999987643
No 129
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.89 E-value=8.8e-21 Score=140.25 Aligned_cols=207 Identities=20% Similarity=0.379 Sum_probs=151.7
Q ss_pred eeeeCccccEEEEEECc--CCCEEEEEeCCCCEEEEeccc-----CCCCceeeEEEecCcCcEEEEEEcCCCC-CEEEEE
Q 026765 14 REYTGHKKKVHSVAWNC--TGTKLASGSVDQTARVWHIEP-----HGHGKVKDIELRGHADSVDQLCWDPKHA-DLIATA 85 (233)
Q Consensus 14 ~~~~~H~~~V~~~~~~~--~~~~l~s~~~D~~v~vW~~~~-----~~~~~~~~~~~~~h~~~v~~~~~~~~~~-~~l~sg 85 (233)
..++.|.+.|..|.|-+ .|+.+|++|.|++++||+-.. ++...+....+......|+++.|.|..- -.++++
T Consensus 53 s~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~ 132 (361)
T KOG2445|consen 53 SSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAA 132 (361)
T ss_pred eeEEecCCcEEEEEecCccccceEEEEecCCceeeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEe
Confidence 35678999999999964 489999999999999997522 1123345556777788999999998643 357899
Q ss_pred eCCCeEEEEECCCCeee------eeee--------ecCCeeEEEECCC---CCeEEEEcCC-----CcEEEEEcCCC---
Q 026765 86 SGDKTVRLWDARSGKCS------QQAE--------LSGENINITYKPD---GTHIAVGNRD-----DELTILDVRKF--- 140 (233)
Q Consensus 86 ~~d~~i~iwd~~~~~~~------~~~~--------~~~~~~~~~~~~~---~~~l~~~~~d-----~~i~i~d~~~~--- 140 (233)
+.||++|||+.....-. .++. ....-.|+.|+|. ..+|++|+.+ +.+.||.....
T Consensus 133 ~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rK 212 (361)
T KOG2445|consen 133 SADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRK 212 (361)
T ss_pred ccCcEEEEEecCCccccccchhhhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcce
Confidence 99999999987544221 1111 1223457888864 3467777765 46788864322
Q ss_pred -eeeeee-ecCceeeEEEECCC----CCEEEEEeCCCeEEEEecCCc--------------------eeeeEEeeecCce
Q 026765 141 -KPIHRR-KFGYEVNEIAWNMT----GEMFFLTTGNGTVEVLTYPSL--------------------RPLDTVVAHTAGC 194 (233)
Q Consensus 141 -~~~~~~-~~~~~~~~~~~~~~----~~~~~~~~~~~~v~~~~~~~~--------------------~~~~~~~~~~~~v 194 (233)
..+..+ .+..+|..++|.|+ ...+++++.|| |+||..... +.+..+..|...|
T Consensus 213 w~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~V 291 (361)
T KOG2445|consen 213 WLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEV 291 (361)
T ss_pred eeeehhcCCCCCcceeeeeccccCCceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCce
Confidence 222221 24568999999986 35688999999 999987621 2345567799999
Q ss_pred eEEEECCCCCEEEEeeCCCcEEEEecC
Q 026765 195 YCIAIDPMGRYFAVGSADSLVSLWDIS 221 (233)
Q Consensus 195 ~~i~~~p~~~~las~s~dg~v~iwd~~ 221 (233)
+.+.|+-.|..|++.+.||+||+|..+
T Consensus 292 Wrv~wNmtGtiLsStGdDG~VRLWkan 318 (361)
T KOG2445|consen 292 WRVRWNMTGTILSSTGDDGCVRLWKAN 318 (361)
T ss_pred EEEEEeeeeeEEeecCCCceeeehhhh
Confidence 999999999999999999999999865
No 130
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.88 E-value=2.1e-21 Score=155.59 Aligned_cols=209 Identities=20% Similarity=0.349 Sum_probs=153.2
Q ss_pred eeeeCccccEEEEEECcCCCEEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCCeEEE
Q 026765 14 REYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRL 93 (233)
Q Consensus 14 ~~~~~H~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~i 93 (233)
+.+..|.++|..++|-|-..+|++++.|.++|+||++....... ..+.||...|.+++|+|.++..+++|+.||.|.|
T Consensus 94 k~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G~--~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~ill 171 (720)
T KOG0321|consen 94 KKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVGG--RLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILL 171 (720)
T ss_pred cccccccceeEeeccCCCceeEEEccCCceeeeeeeccceeecc--eeecccccccchhhhccCCCcceeeccCCCcEEE
Confidence 45668999999999999667899999999999999975332211 1467999999999999999999999999999999
Q ss_pred EECCCCeee------------eee----------------eecCCe---eEEEECCCCCeEEEEcC-CCcEEEEEcCCCe
Q 026765 94 WDARSGKCS------------QQA----------------ELSGEN---INITYKPDGTHIAVGNR-DDELTILDVRKFK 141 (233)
Q Consensus 94 wd~~~~~~~------------~~~----------------~~~~~~---~~~~~~~~~~~l~~~~~-d~~i~i~d~~~~~ 141 (233)
||++-.... +.- .....+ +.+.+..|...|++++. |+.|++||+++..
T Consensus 172 WD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~ 251 (720)
T KOG0321|consen 172 WDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNY 251 (720)
T ss_pred EEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEeccceeeeccCCCcceEEEeecccc
Confidence 999743200 000 000011 22555678888888777 9999999998754
Q ss_pred eeeeee------c------CceeeEEEECCCCCEEEEEeCCCeEEEEecCCc--eeeeEEeeecCceeE--EEECCCCCE
Q 026765 142 PIHRRK------F------GYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSL--RPLDTVVAHTAGCYC--IAIDPMGRY 205 (233)
Q Consensus 142 ~~~~~~------~------~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~~~~~~~~~~v~~--i~~~p~~~~ 205 (233)
...... . ...+.++.....|.++.+.+.|+.|+.|+.... .+...+.++...-.- -..+|++.+
T Consensus 252 ~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~ 331 (720)
T KOG0321|consen 252 TAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCS 331 (720)
T ss_pred cccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecCCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCce
Confidence 322111 1 234667777888999999999999999998643 233344444332222 246899999
Q ss_pred EEEeeCCCcEEEEecCCcE
Q 026765 206 FAVGSADSLVSLWDISEML 224 (233)
Q Consensus 206 las~s~dg~v~iwd~~~~~ 224 (233)
+++|+.|..++||.+...+
T Consensus 332 l~SgSsd~~ayiw~vs~~e 350 (720)
T KOG0321|consen 332 LLSGSSDEQAYIWVVSSPE 350 (720)
T ss_pred EeccCCCcceeeeeecCcc
Confidence 9999999999999988653
No 131
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.88 E-value=2.6e-21 Score=149.80 Aligned_cols=192 Identities=18% Similarity=0.253 Sum_probs=155.3
Q ss_pred eeeeCccccEEEEEECcCCCEEEEEeCCCCEEEEeccc----C-CCCceeeEEEecCcCcEEEEEEcCCC-CCEEEEEeC
Q 026765 14 REYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEP----H-GHGKVKDIELRGHADSVDQLCWDPKH-ADLIATASG 87 (233)
Q Consensus 14 ~~~~~H~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~----~-~~~~~~~~~~~~h~~~v~~~~~~~~~-~~~l~sg~~ 87 (233)
..+.+|-.+|+|+.|+-||.+|+|||.||.|.+|.+.. . .........+..|+-+|+++...+.+ ...++|+|.
T Consensus 117 ~v~~aHYQ~ITcL~fs~dgs~iiTgskDg~V~vW~l~~lv~a~~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~ 196 (476)
T KOG0646|consen 117 NVLSAHYQSITCLKFSDDGSHIITGSKDGAVLVWLLTDLVSADNDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASE 196 (476)
T ss_pred HHHHhhccceeEEEEeCCCcEEEecCCCccEEEEEEEeecccccCCCccceeeeccCcceeEEEEecCCCccceEEEecC
Confidence 45689999999999999999999999999999998732 1 11122334678999999999886542 246789999
Q ss_pred CCeEEEEECCCCeeeeeeeecCCeeEEEECCCCCeEEEEcCCCcEEEEEcCCCee----------------eeee-ec--
Q 026765 88 DKTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKP----------------IHRR-KF-- 148 (233)
Q Consensus 88 d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~----------------~~~~-~~-- 148 (233)
|.++++||+..+.....+.++....+++.+|.++.+.+|+++|+|.+.++.+... +... -+
T Consensus 197 D~t~k~wdlS~g~LLlti~fp~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~ 276 (476)
T KOG0646|consen 197 DRTIKLWDLSLGVLLLTITFPSSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHEN 276 (476)
T ss_pred CceEEEEEeccceeeEEEecCCcceeEEEcccccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccC
Confidence 9999999999999888888888889999999999999999999999887643221 0000 01
Q ss_pred CceeeEEEECCCCCEEEEEeCCCeEEEEecCCceeeeEEeeecCceeEEEECCCCCE
Q 026765 149 GYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRY 205 (233)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~ 205 (233)
+.+|++++.+.||..+++|+.||.+.+||..+.+.++++....++|+-+.+.|--+-
T Consensus 277 ~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~Q~iRtl~~~kgpVtnL~i~~~~~~ 333 (476)
T KOG0646|consen 277 ESAITCLAISTDGTLLLSGDEDGKVCVWDIYSKQCIRTLQTSKGPVTNLQINPLERG 333 (476)
T ss_pred CcceeEEEEecCccEEEeeCCCCCEEEEecchHHHHHHHhhhccccceeEeeccccc
Confidence 137999999999999999999999999999988888887766778888888665443
No 132
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.88 E-value=6.3e-22 Score=156.44 Aligned_cols=218 Identities=24% Similarity=0.345 Sum_probs=158.1
Q ss_pred cceeeeCccccEEEEEECcCCCEEEEEeCCCCEEEEecccCCC------CceeeEEEecCcCcEEEEEEcCCCCCEEEEE
Q 026765 12 HSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGH------GKVKDIELRGHADSVDQLCWDPKHADLIATA 85 (233)
Q Consensus 12 ~~~~~~~H~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~------~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg 85 (233)
++-+|.+|.++|.|++..+.++++.||+.||+|+.|++.+... .....-.+.||.++|..+++++.. ..|+++
T Consensus 336 pi~tfraH~gPVl~v~v~~n~~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~-~~Llsc 414 (577)
T KOG0642|consen 336 PILTFRAHEGPVLCVVVPSNGEHCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTK-DRLLSC 414 (577)
T ss_pred eeEEEecccCceEEEEecCCceEEEeeccCceeeeeccCCCCCcccccCcchhccceeccccceeeeeecccc-cceeee
Confidence 3458999999999999999999999999999999997642110 112223577999999999999875 457799
Q ss_pred eCCCeEEEEECCCCeeeeeee---ecCCeeEEEECCCC-CeEEEEcCCCcEEEEEcCCCeeeeeee--------cCceee
Q 026765 86 SGDKTVRLWDARSGKCSQQAE---LSGENINITYKPDG-THIAVGNRDDELTILDVRKFKPIHRRK--------FGYEVN 153 (233)
Q Consensus 86 ~~d~~i~iwd~~~~~~~~~~~---~~~~~~~~~~~~~~-~~l~~~~~d~~i~i~d~~~~~~~~~~~--------~~~~~~ 153 (233)
+.||+++.|+...... ..+. -.+-...+.+-... ...++...-+.-.++++.......... ....++
T Consensus 415 s~DgTvr~w~~~~~~~-~~f~~~~e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in 493 (577)
T KOG0642|consen 415 SSDGTVRLWEPTEESP-CTFGEPKEHGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQIN 493 (577)
T ss_pred cCCceEEeeccCCcCc-cccCCccccCCcceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccc
Confidence 9999999999766543 1111 11223334432221 112222222222223332221111111 113578
Q ss_pred EEEECCCCCEEEEEeCCCeEEEEecCCceeeeEEeeecCceeEEEECCCCCEEEEeeCCCcEEEEecCCcEEEEeeec
Q 026765 154 EIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTK 231 (233)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~las~s~dg~v~iwd~~~~~~i~~~~~ 231 (233)
.+.++|...+.+.+..|+.++++|..+++++.....|...+.++++.|+|.+|++++.|+.+++|++....|++++..
T Consensus 494 ~vVs~~~~~~~~~~hed~~Ir~~dn~~~~~l~s~~a~~~svtslai~~ng~~l~s~s~d~sv~l~kld~k~~~~es~~ 571 (577)
T KOG0642|consen 494 KVVSHPTADITFTAHEDRSIRFFDNKTGKILHSMVAHKDSVTSLAIDPNGPYLMSGSHDGSVRLWKLDVKTCVLESTA 571 (577)
T ss_pred eEEecCCCCeeEecccCCceecccccccccchheeeccceecceeecCCCceEEeecCCceeehhhccchheeecccc
Confidence 889999999999999999999999999999999999999999999999999999999999999999998888887653
No 133
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.88 E-value=6e-21 Score=147.62 Aligned_cols=208 Identities=17% Similarity=0.254 Sum_probs=158.5
Q ss_pred eeeeCccccEEEEEECcCC--CEEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCCeE
Q 026765 14 REYTGHKKKVHSVAWNCTG--TKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTV 91 (233)
Q Consensus 14 ~~~~~H~~~V~~~~~~~~~--~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i 91 (233)
.++.-|.++|++++|+|.. +.+|+|+.-|.|=+||+..+....-..+.+..|..+|.++.|+|.+...+++.+.||+|
T Consensus 180 ~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGti 259 (498)
T KOG4328|consen 180 NVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGTI 259 (498)
T ss_pred ceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccCcee
Confidence 4566789999999999965 57888999999999999532222223445778999999999999998899999999999
Q ss_pred EEEECCCCeeeeeeeec--CC-eeEEEECCCCCeEEEEcCCCcEEEEEcCCCeee-ee-eecCceeeEEEECCCCCE-EE
Q 026765 92 RLWDARSGKCSQQAELS--GE-NINITYKPDGTHIAVGNRDDELTILDVRKFKPI-HR-RKFGYEVNEIAWNMTGEM-FF 165 (233)
Q Consensus 92 ~iwd~~~~~~~~~~~~~--~~-~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~-~~-~~~~~~~~~~~~~~~~~~-~~ 165 (233)
++-|+............ .. ...+.|+.+...++.+..=|.+.+||+++.... .. ..+...|+.++++|...+ ++
T Consensus 260 R~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~la 339 (498)
T KOG4328|consen 260 RLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVIDLRTDGSEYENLRLHKKKITSVALNPVCPWFLA 339 (498)
T ss_pred eeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEEeecCCccchhhhhhhcccceeecCCCCchhee
Confidence 99999876432222221 11 123566666666666666669999999876542 21 224457999999998765 66
Q ss_pred EEeCCCeEEEEecCCce----eeeEEeeecCceeEEEECCCCCEEEEeeCCCcEEEEecC
Q 026765 166 LTTGNGTVEVLTYPSLR----PLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDIS 221 (233)
Q Consensus 166 ~~~~~~~v~~~~~~~~~----~~~~~~~~~~~v~~i~~~p~~~~las~s~dg~v~iwd~~ 221 (233)
+++-|++.+|||++... ++.....|...|.+..|||.+-.|+|.+.|..|+|||..
T Consensus 340 T~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss 399 (498)
T KOG4328|consen 340 TASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSS 399 (498)
T ss_pred ecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEeeccCCceEEeecc
Confidence 77889999999997543 334445699999999999999889999999999999983
No 134
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.88 E-value=3.9e-20 Score=136.77 Aligned_cols=195 Identities=17% Similarity=0.226 Sum_probs=156.2
Q ss_pred cccEEEEEECcCCCEEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCCeEEEEECCCC
Q 026765 20 KKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSG 99 (233)
Q Consensus 20 ~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~iwd~~~~ 99 (233)
...|..+.|+|.++.|+.+++||++++|++.... ...++ .|..++.+++|.+. ..+++|+-||.|+.+|+.++
T Consensus 13 ~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~----l~~~~-~~~~plL~c~F~d~--~~~~~G~~dg~vr~~Dln~~ 85 (323)
T KOG1036|consen 13 EDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANS----LKLKF-KHGAPLLDCAFADE--STIVTGGLDGQVRRYDLNTG 85 (323)
T ss_pred hhceeeEEEcCcCCcEEEEeccCcEEEEeccchh----hhhhe-ecCCceeeeeccCC--ceEEEeccCceEEEEEecCC
Confidence 6779999999999999999999999999987531 11223 48899999999874 45789999999999999998
Q ss_pred eeeeeeeecCCeeEEEECCCCCeEEEEcCCCcEEEEEcCCCeeeeeeecCceeeEEEECCCCCEEEEEeCCCeEEEEecC
Q 026765 100 KCSQQAELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYP 179 (233)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 179 (233)
.......+...+.++.+.+-...+++|++|++|++||.+..........+..|.++.. .++.+++|+.+..+.+||++
T Consensus 86 ~~~~igth~~~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~d~~kkVy~~~v--~g~~LvVg~~~r~v~iyDLR 163 (323)
T KOG1036|consen 86 NEDQIGTHDEGIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTFDQGKKVYCMDV--SGNRLVVGTSDRKVLIYDLR 163 (323)
T ss_pred cceeeccCCCceEEEEeeccCCeEEEcccCccEEEEeccccccccccccCceEEEEec--cCCEEEEeecCceEEEEEcc
Confidence 7666666667788999998888999999999999999997555444444556777664 68899999999999999998
Q ss_pred CceeeeEE--eeecCceeEEEECCCCCEEEEeeCCCcEEEEecCCc
Q 026765 180 SLRPLDTV--VAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEM 223 (233)
Q Consensus 180 ~~~~~~~~--~~~~~~v~~i~~~p~~~~las~s~dg~v~iwd~~~~ 223 (233)
+.....+. ..-.-.+.||++-|++.-++.+|-||.|.+=.+++.
T Consensus 164 n~~~~~q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s 209 (323)
T KOG1036|consen 164 NLDEPFQRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDS 209 (323)
T ss_pred cccchhhhccccceeEEEEEEEecCCCceEEEeecceEEEEccCCc
Confidence 76543321 112235789999999999999999999988777655
No 135
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.87 E-value=3.7e-21 Score=156.28 Aligned_cols=203 Identities=15% Similarity=0.205 Sum_probs=165.7
Q ss_pred CccccEEEEEECcCCCEEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCC--CCCEEEEEeCCCeEEEEE
Q 026765 18 GHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPK--HADLIATASGDKTVRLWD 95 (233)
Q Consensus 18 ~H~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~~l~sg~~d~~i~iwd 95 (233)
+-...+++++.+|+|++||+|..-|.+|||++..-. . .....+|...|.++.|+-. ..++|++|+.|..|+|||
T Consensus 457 d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~--~--~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~D 532 (1080)
T KOG1408|consen 457 DSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELE--Y--TCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYD 532 (1080)
T ss_pred CcccceEEEEECCCcceecccCccCceEEEEehhhh--h--hhheecccceeEEEeecCchhhhHhhhhccCCceEEEEe
Confidence 456789999999999999999999999999986422 1 1235689999999999642 346899999999999999
Q ss_pred CCCCe-eeee------------e-----------------------e---------------ecCCeeEEEECCCCCeEE
Q 026765 96 ARSGK-CSQQ------------A-----------------------E---------------LSGENINITYKPDGTHIA 124 (233)
Q Consensus 96 ~~~~~-~~~~------------~-----------------------~---------------~~~~~~~~~~~~~~~~l~ 124 (233)
+...- ..++ + . .+...+.++..|..++++
T Consensus 533 v~rny~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp~~k~v~ 612 (1080)
T KOG1408|consen 533 VKRNYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAVDPTSKLVV 612 (1080)
T ss_pred cccccchhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeeeCCCcceEE
Confidence 85220 0000 0 0 001124578889999999
Q ss_pred EEcCCCcEEEEEcCCCeeeeeeecC----ceeeEEEECCCCCEEEEEeCCCeEEEEecCCceeeeEEeeecCceeEEEEC
Q 026765 125 VGNRDDELTILDVRKFKPIHRRKFG----YEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAHTAGCYCIAID 200 (233)
Q Consensus 125 ~~~~d~~i~i~d~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~i~~~ 200 (233)
+++.|..|+|||+.+++.....+.. ...-.+...|.|.|+++.+.|.++.++|+-+++++.+..+|.+.|+.+.|.
T Consensus 613 t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~m~GHsE~VTG~kF~ 692 (1080)
T KOG1408|consen 613 TVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQMTGHSEAVTGVKFL 692 (1080)
T ss_pred EEecccceEEEeccccceeeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccchhhhhhcCcchheeeeeec
Confidence 9999999999999998887766632 345567889999999999999999999999999999999999999999999
Q ss_pred CCCCEEEEeeCCCcEEEEecCCcE
Q 026765 201 PMGRYFAVGSADSLVSLWDISEML 224 (233)
Q Consensus 201 p~~~~las~s~dg~v~iwd~~~~~ 224 (233)
+|-++|++.+.||.|.||.+....
T Consensus 693 nDCkHlISvsgDgCIFvW~lp~~m 716 (1080)
T KOG1408|consen 693 NDCKHLISVSGDGCIFVWKLPLTM 716 (1080)
T ss_pred ccchhheeecCCceEEEEECchhH
Confidence 999999999999999999987543
No 136
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.87 E-value=1.1e-20 Score=152.64 Aligned_cols=212 Identities=15% Similarity=0.252 Sum_probs=161.4
Q ss_pred CCCCCCCCcccee------eeCccccEEE-EEECc-CCCEEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEE
Q 026765 3 ESSIPFKNLHSRE------YTGHKKKVHS-VAWNC-TGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCW 74 (233)
Q Consensus 3 ~~~~~~~~~~~~~------~~~H~~~V~~-~~~~~-~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~ 74 (233)
+++++++..+.+. +.+|.+-|.. ++|-+ ++..+++|+.|.++.+|.+.... ....++||...|.+++.
T Consensus 34 d~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i~v~~~~~~~----P~~~LkgH~snVC~ls~ 109 (745)
T KOG0301|consen 34 DGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDTTIIVFKLSQAE----PLYTLKGHKSNVCSLSI 109 (745)
T ss_pred CCceeeeeccCcccccceecccCcceeeccceeccccCcceEeecccceEEEEecCCCC----chhhhhccccceeeeec
Confidence 4455555554433 4567888877 88876 45569999999999999876432 23468899999999997
Q ss_pred cCCCCCEEEEEeCCCeEEEEECCCCeeeeeeeec-CCeeEEEECCCCCeEEEEcCCCcEEEEEcCCCeeeeeee-cCcee
Q 026765 75 DPKHADLIATASGDKTVRLWDARSGKCSQQAELS-GENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRK-FGYEV 152 (233)
Q Consensus 75 ~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~-~~~~~ 152 (233)
..++ . ++|||+|.++++|-.. ++...+..+ ..++++..-|++ .+++|+.|+.|++|.-.+ .+.... +..-+
T Consensus 110 ~~~~-~-~iSgSWD~TakvW~~~--~l~~~l~gH~asVWAv~~l~e~-~~vTgsaDKtIklWk~~~--~l~tf~gHtD~V 182 (745)
T KOG0301|consen 110 GEDG-T-LISGSWDSTAKVWRIG--ELVYSLQGHTASVWAVASLPEN-TYVTGSADKTIKLWKGGT--LLKTFSGHTDCV 182 (745)
T ss_pred CCcC-c-eEecccccceEEecch--hhhcccCCcchheeeeeecCCC-cEEeccCcceeeeccCCc--hhhhhccchhhe
Confidence 7654 3 7899999999999753 344444433 456678888877 788999999999998532 222222 33456
Q ss_pred eEEEECCCCCEEEEEeCCCeEEEEecCCceeeeEEeeecCceeEEEECCCCCEEEEeeCCCcEEEEecCCcEEEEee
Q 026765 153 NEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTF 229 (233)
Q Consensus 153 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~las~s~dg~v~iwd~~~~~~i~~~ 229 (233)
..+++=+ +..+++.+.||.|+.|+. +++.+..+.+|..-|++++..+++..++++++|++++||+.. +|++++
T Consensus 183 RgL~vl~-~~~flScsNDg~Ir~w~~-~ge~l~~~~ghtn~vYsis~~~~~~~Ivs~gEDrtlriW~~~--e~~q~I 255 (745)
T KOG0301|consen 183 RGLAVLD-DSHFLSCSNDGSIRLWDL-DGEVLLEMHGHTNFVYSISMALSDGLIVSTGEDRTLRIWKKD--ECVQVI 255 (745)
T ss_pred eeeEEec-CCCeEeecCCceEEEEec-cCceeeeeeccceEEEEEEecCCCCeEEEecCCceEEEeecC--ceEEEE
Confidence 7777643 446788899999999998 789999999999999999988889999999999999999987 566654
No 137
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.86 E-value=3.5e-19 Score=139.62 Aligned_cols=194 Identities=18% Similarity=0.256 Sum_probs=151.8
Q ss_pred cccEEEEEECcCCCEEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCCeEEEEECCCC
Q 026765 20 KKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSG 99 (233)
Q Consensus 20 ~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~iwd~~~~ 99 (233)
+..|.|++|.++|+. +||.++|.+.||+... .++..... .|...|.+++...++ .|+||+.|..|..||-...
T Consensus 246 kk~Vl~v~F~engdv-iTgDS~G~i~Iw~~~~---~~~~k~~~-aH~ggv~~L~~lr~G--tllSGgKDRki~~Wd~~y~ 318 (626)
T KOG2106|consen 246 KKFVLCVTFLENGDV-ITGDSGGNILIWSKGT---NRISKQVH-AHDGGVFSLCMLRDG--TLLSGGKDRKIILWDDNYR 318 (626)
T ss_pred ceEEEEEEEcCCCCE-EeecCCceEEEEeCCC---ceEEeEee-ecCCceEEEEEecCc--cEeecCccceEEecccccc
Confidence 477999999987764 5999999999999742 23333334 899999999998764 3568999999999984322
Q ss_pred ee-----------eeeee------------------------------ecCCeeEEEECCCCCeEEEEcCCCcEEEEEcC
Q 026765 100 KC-----------SQQAE------------------------------LSGENINITYKPDGTHIAVGNRDDELTILDVR 138 (233)
Q Consensus 100 ~~-----------~~~~~------------------------------~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~ 138 (233)
+. ++... ...+...++.+|+.+.+++++.|+.+++|+
T Consensus 319 k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~gqdk~v~lW~-- 396 (626)
T KOG2106|consen 319 KLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCGQDKHVRLWN-- 396 (626)
T ss_pred ccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCChhheeeccCcceEEEcc--
Confidence 10 00000 011223567889999999999999999999
Q ss_pred CCeeeeeeecCceeeEEEECCCCCEEEEEeCCCeEEEEecCCceeeeEEeeecCceeEEEECCCCCEEEEeeCCCcEEEE
Q 026765 139 KFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLW 218 (233)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~las~s~dg~v~iw 218 (233)
..++........+..++.|+|.| .+++|...|...++|.++... .++....+++.+++|+|+|.+||.|+.|+.|+||
T Consensus 397 ~~k~~wt~~~~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~l-v~~~~d~~~ls~v~ysp~G~~lAvgs~d~~iyiy 474 (626)
T KOG2106|consen 397 DHKLEWTKIIEDPAECADFHPSG-VVAVGTATGRWFVLDTETQDL-VTIHTDNEQLSVVRYSPDGAFLAVGSHDNHIYIY 474 (626)
T ss_pred CCceeEEEEecCceeEeeccCcc-eEEEeeccceEEEEeccccee-EEEEecCCceEEEEEcCCCCEEEEecCCCeEEEE
Confidence 56677777778899999999999 999999999999999987433 3444447899999999999999999999999999
Q ss_pred ecCCcE
Q 026765 219 DISEML 224 (233)
Q Consensus 219 d~~~~~ 224 (233)
.+....
T Consensus 475 ~Vs~~g 480 (626)
T KOG2106|consen 475 RVSANG 480 (626)
T ss_pred EECCCC
Confidence 997543
No 138
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.86 E-value=1.9e-21 Score=164.52 Aligned_cols=210 Identities=17% Similarity=0.261 Sum_probs=165.1
Q ss_pred ceeeeCccccEEEEEECcCCC-EEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCCeE
Q 026765 13 SREYTGHKKKVHSVAWNCTGT-KLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTV 91 (233)
Q Consensus 13 ~~~~~~H~~~V~~~~~~~~~~-~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i 91 (233)
..++..|++.|..+.|++.+. +||||+.||.|.|||++.-...-.. --..-.+.|.+++|+..-+++|+|++.+|.+
T Consensus 109 la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~--~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~ 186 (1049)
T KOG0307|consen 109 LATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTP--GSQAPPSEIKCLSWNRKVSHILASGSPSGRA 186 (1049)
T ss_pred HhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCC--CCCCCcccceEeccchhhhHHhhccCCCCCc
Confidence 356788999999999999765 9999999999999999742211110 0112356899999999888999999999999
Q ss_pred EEEECCCCeeeeeeeecCC---eeEEEECCCCC-eEEEEcCCC---cEEEEEcCCCe-eeeee-ecCceeeEEEECCCC-
Q 026765 92 RLWDARSGKCSQQAELSGE---NINITYKPDGT-HIAVGNRDD---ELTILDVRKFK-PIHRR-KFGYEVNEIAWNMTG- 161 (233)
Q Consensus 92 ~iwd~~~~~~~~~~~~~~~---~~~~~~~~~~~-~l~~~~~d~---~i~i~d~~~~~-~~~~~-~~~~~~~~~~~~~~~- 161 (233)
.|||++..+.+..+..... .-.++|+|+.. .+++++.|. .|.+||+|... ++..+ .+...+.++.|++.+
T Consensus 187 ~iWDlr~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k~~~~H~~GilslsWc~~D~ 266 (1049)
T KOG0307|consen 187 VIWDLRKKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLKILEGHQRGILSLSWCPQDP 266 (1049)
T ss_pred eeccccCCCcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCchhhhcccccceeeeccCCCCc
Confidence 9999998865554443333 23589999864 466666553 58999998533 33333 345679999999887
Q ss_pred CEEEEEeCCCeEEEEecCCceeeeEEeeecCceeEEEECCCCC-EEEEeeCCCcEEEEecCCcE
Q 026765 162 EMFFLTTGNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGR-YFAVGSADSLVSLWDISEML 224 (233)
Q Consensus 162 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~-~las~s~dg~v~iwd~~~~~ 224 (233)
.++++.+.|+.+.+|+..+++.+..+......++.+.|.|... .+++++-||.|-||.+..+.
T Consensus 267 ~lllSsgkD~~ii~wN~~tgEvl~~~p~~~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~~ 330 (1049)
T KOG0307|consen 267 RLLLSSGKDNRIICWNPNTGEVLGELPAQGNWCFDVQWCPRNPSVMAAASFDGKISIYSLQGTD 330 (1049)
T ss_pred hhhhcccCCCCeeEecCCCceEeeecCCCCcceeeeeecCCCcchhhhheeccceeeeeeecCC
Confidence 6777888999999999999999999988889999999999886 78999999999999987543
No 139
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.86 E-value=1.1e-19 Score=144.98 Aligned_cols=212 Identities=20% Similarity=0.307 Sum_probs=158.7
Q ss_pred CCCCCccceeeeCccccEEEEEECcCCCEEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEE
Q 026765 6 IPFKNLHSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATA 85 (233)
Q Consensus 6 ~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg 85 (233)
-||++.....|.||++.|.+|...|.|.+|+||+.||+||||.+.++. ++...++ .+.|.+++|+|.....++..
T Consensus 386 rPFPt~~~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgR--cvr~~~~---d~~I~~vaw~P~~~~~vLAv 460 (733)
T KOG0650|consen 386 RPFPTRCALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGR--CVRTVQF---DSEIRSVAWNPLSDLCVLAV 460 (733)
T ss_pred CCCcceeeeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecce--EEEEEee---cceeEEEEecCCCCceeEEE
Confidence 479999889999999999999999999999999999999999997643 2333333 35899999999876655455
Q ss_pred eCCCeEEEEECCCCe---------e-----------------------------eeeeeecCCeeEEEECCCCCeEEEEc
Q 026765 86 SGDKTVRLWDARSGK---------C-----------------------------SQQAELSGENINITYKPDGTHIAVGN 127 (233)
Q Consensus 86 ~~d~~i~iwd~~~~~---------~-----------------------------~~~~~~~~~~~~~~~~~~~~~l~~~~ 127 (233)
+....+.|-+-.-|. . ...+.....+..+.|+..|.||++..
T Consensus 461 A~~~~~~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~ 540 (733)
T KOG0650|consen 461 AVGECVLIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVM 540 (733)
T ss_pred EecCceEEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEec
Confidence 444445554422110 0 00011122334578999999999877
Q ss_pred CC---CcEEEEEcCCCeeeee-eecCceeeEEEECCCCCEEEEEeCCCeEEEEecCCceeeeEEeeecCceeEEEECCCC
Q 026765 128 RD---DELTILDVRKFKPIHR-RKFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMG 203 (233)
Q Consensus 128 ~d---~~i~i~d~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~ 203 (233)
.+ ..+.|.++.......- .+....+..+.|+|...++++++.. .+++||+...+.++.+......|.+++.+|.|
T Consensus 541 ~~~~~~~VliHQLSK~~sQ~PF~kskG~vq~v~FHPs~p~lfVaTq~-~vRiYdL~kqelvKkL~tg~kwiS~msihp~G 619 (733)
T KOG0650|consen 541 PDSGNKSVLIHQLSKRKSQSPFRKSKGLVQRVKFHPSKPYLFVATQR-SVRIYDLSKQELVKKLLTGSKWISSMSIHPNG 619 (733)
T ss_pred cCCCcceEEEEecccccccCchhhcCCceeEEEecCCCceEEEEecc-ceEEEehhHHHHHHHHhcCCeeeeeeeecCCC
Confidence 64 4577888765433322 2334568899999999999888765 79999998888888877778889999999999
Q ss_pred CEEEEeeCCCcEEEEecCCc
Q 026765 204 RYFAVGSADSLVSLWDISEM 223 (233)
Q Consensus 204 ~~las~s~dg~v~iwd~~~~ 223 (233)
..|+.|+.|+.+..||+.-.
T Consensus 620 Dnli~gs~d~k~~WfDldls 639 (733)
T KOG0650|consen 620 DNLILGSYDKKMCWFDLDLS 639 (733)
T ss_pred CeEEEecCCCeeEEEEcccC
Confidence 99999999999999999744
No 140
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.86 E-value=4e-20 Score=136.29 Aligned_cols=170 Identities=21% Similarity=0.315 Sum_probs=137.9
Q ss_pred ecCcCcEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCe------------eeeeeee-cC---CeeEEEECC-CCCeEEE
Q 026765 63 RGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGK------------CSQQAEL-SG---ENINITYKP-DGTHIAV 125 (233)
Q Consensus 63 ~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~------------~~~~~~~-~~---~~~~~~~~~-~~~~l~~ 125 (233)
+.|.+.|+++.+.+..+++++||+.||.|.+||++... |+..... .+ .+..+.|-| |.-.+.+
T Consensus 40 r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFts 119 (397)
T KOG4283|consen 40 RPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTS 119 (397)
T ss_pred ccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeec
Confidence 45889999999999888999999999999999997542 1100000 11 123456666 4446778
Q ss_pred EcCCCcEEEEEcCCCeeeeeeecCceeeEEEECCC---CCEEEEEeCCCeEEEEecCCceeeeEEeeecCceeEEEECCC
Q 026765 126 GNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMT---GEMFFLTTGNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPM 202 (233)
Q Consensus 126 ~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~i~~~p~ 202 (233)
++.|.++++||..+.+.....+++..+.+-+++|- .-++++|..+-.|++.|+.++..-..+.+|...|.++.|+|.
T Consensus 120 sSFDhtlKVWDtnTlQ~a~~F~me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH~LsGHr~~vlaV~Wsp~ 199 (397)
T KOG4283|consen 120 SSFDHTLKVWDTNTLQEAVDFKMEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSHTLSGHRDGVLAVEWSPS 199 (397)
T ss_pred ccccceEEEeecccceeeEEeecCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCcceeeeccccCceEEEEeccC
Confidence 88999999999999888888888888888888875 346788889999999999999999999999999999999999
Q ss_pred CCE-EEEeeCCCcEEEEecCCc-EEEEeeecC
Q 026765 203 GRY-FAVGSADSLVSLWDISEM-LCVRTFTKL 232 (233)
Q Consensus 203 ~~~-las~s~dg~v~iwd~~~~-~~i~~~~~~ 232 (233)
..+ ||+|+.||.|++||++.. -|.+++..+
T Consensus 200 ~e~vLatgsaDg~irlWDiRrasgcf~~lD~h 231 (397)
T KOG4283|consen 200 SEWVLATGSADGAIRLWDIRRASGCFRVLDQH 231 (397)
T ss_pred ceeEEEecCCCceEEEEEeecccceeEEeecc
Confidence 886 789999999999999866 677777655
No 141
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.85 E-value=1.3e-19 Score=149.17 Aligned_cols=198 Identities=17% Similarity=0.316 Sum_probs=168.3
Q ss_pred cccEEEEEECcCCCEEEEEeCCCCEEEEecccCCCCceeeEEE---ecCcCcEEEEEEcCCCCCEEEEEeCCCeEEEEEC
Q 026765 20 KKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIEL---RGHADSVDQLCWDPKHADLIATASGDKTVRLWDA 96 (233)
Q Consensus 20 ~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~---~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~iwd~ 96 (233)
...+++|+.++=|++.+.|++.|+|-++++.. .+..-.+ +.|..+|+.++.+..+ ++++|++.+|.+++||.
T Consensus 448 ~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQS----Gi~r~sf~~~~ah~~~V~gla~D~~n-~~~vsa~~~Gilkfw~f 522 (910)
T KOG1539|consen 448 DINATAVCVSFCGNFVFIGYSKGTIDRFNMQS----GIHRKSFGDSPAHKGEVTGLAVDGTN-RLLVSAGADGILKFWDF 522 (910)
T ss_pred CcceEEEEEeccCceEEEeccCCeEEEEEccc----CeeecccccCccccCceeEEEecCCC-ceEEEccCcceEEEEec
Confidence 37899999999999999999999999999864 2233334 5799999999997654 57789999999999999
Q ss_pred CCCeeeeeeeecCCeeEEEECCCCCeEEEEcCCCcEEEEEcCCCeeeeeee-cCceeeEEEECCCCCEEEEEeCCCeEEE
Q 026765 97 RSGKCSQQAELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRK-FGYEVNEIAWNMTGEMFFLTTGNGTVEV 175 (233)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 175 (233)
.+......+........+.++.....++.+..|-.|.++|+.+.+.+.... ++..++.++|+|+|+.+++++.|++|++
T Consensus 523 ~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD~tIr~ 602 (910)
T KOG1539|consen 523 KKKVLKKSLRLGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISASMDSTIRT 602 (910)
T ss_pred CCcceeeeeccCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEeecCCcEEE
Confidence 988877777777777778888777888999999999999998877766554 6778999999999999999999999999
Q ss_pred EecCCceeeeEEeeecCceeEEEECCCCCEEEEeeCC-CcEEEEecCCc
Q 026765 176 LTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSAD-SLVSLWDISEM 223 (233)
Q Consensus 176 ~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~las~s~d-g~v~iwd~~~~ 223 (233)
||+.++..+..+. -..++.+++|+|+|.+|||...| .-|++|-=.+.
T Consensus 603 wDlpt~~lID~~~-vd~~~~sls~SPngD~LAT~Hvd~~gIylWsNksl 650 (910)
T KOG1539|consen 603 WDLPTGTLIDGLL-VDSPCTSLSFSPNGDFLATVHVDQNGIYLWSNKSL 650 (910)
T ss_pred EeccCcceeeeEe-cCCcceeeEECCCCCEEEEEEecCceEEEEEchhH
Confidence 9999998887765 35677899999999999999998 66999965443
No 142
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.85 E-value=1e-18 Score=141.07 Aligned_cols=213 Identities=17% Similarity=0.277 Sum_probs=167.7
Q ss_pred eeeeCccccEEEEEECcCCCEEEEEeCCCCEEEEecccCCCCceeeEEEecCc-CcEEEEEEcCCCCCEEEEEeCCCeEE
Q 026765 14 REYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHA-DSVDQLCWDPKHADLIATASGDKTVR 92 (233)
Q Consensus 14 ~~~~~H~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~-~~v~~~~~~~~~~~~l~sg~~d~~i~ 92 (233)
+.+.=-..+|.++||+.+.+.||.+-.||.|-+|++.. ...+...+.++. ..|-.++|.+. + .|+|.+.+|.|.
T Consensus 19 rf~d~~Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~---~w~~~~vi~g~~drsIE~L~W~e~-~-RLFS~g~sg~i~ 93 (691)
T KOG2048|consen 19 RFVDYKPSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSN---NWFLEPVIHGPEDRSIESLAWAEG-G-RLFSSGLSGSIT 93 (691)
T ss_pred EEEeeeccceEEEEEeccCCceeeeccCCcEEEEccCC---CceeeEEEecCCCCceeeEEEccC-C-eEEeecCCceEE
Confidence 44444578899999999999999999999999999874 455666677765 57999999953 3 467999999999
Q ss_pred EEECCCCeeeeeeee-cCCeeEEEECCCCCeEEEEcCCCcEEEEEcCCCeeeeeeec---CceeeEEEECCCCCEEEEEe
Q 026765 93 LWDARSGKCSQQAEL-SGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKF---GYEVNEIAWNMTGEMFFLTT 168 (233)
Q Consensus 93 iwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~ 168 (233)
-||+.+.+....... .+.+++++.+|.+..+++|+.||.+..++...........+ ...+.+++|++++..++.|+
T Consensus 94 EwDl~~lk~~~~~d~~gg~IWsiai~p~~~~l~IgcddGvl~~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs 173 (691)
T KOG2048|consen 94 EWDLHTLKQKYNIDSNGGAIWSIAINPENTILAIGCDDGVLYDFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGS 173 (691)
T ss_pred EEecccCceeEEecCCCcceeEEEeCCccceEEeecCCceEEEEecCCceEEEEeecccccceEEEEEecCCccEEEecc
Confidence 999999887665554 45678899999999999999999877788776665554433 35689999999999999999
Q ss_pred CCCeEEEEecCCceeeeEEe----e----ecCceeEEEECCCCCEEEEeeCCCcEEEEecCCcEEEEeeecC
Q 026765 169 GNGTVEVLTYPSLRPLDTVV----A----HTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKL 232 (233)
Q Consensus 169 ~~~~v~~~~~~~~~~~~~~~----~----~~~~v~~i~~~p~~~~las~s~dg~v~iwd~~~~~~i~~~~~~ 232 (233)
.||.|++||...+....-.. + ..--|+++.+=. ...||+|..-|+|++||...+..++.+.-|
T Consensus 174 ~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~Lr-d~tI~sgDS~G~V~FWd~~~gTLiqS~~~h 244 (691)
T KOG2048|consen 174 IDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFLR-DSTIASGDSAGTVTFWDSIFGTLIQSHSCH 244 (691)
T ss_pred cCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEee-cCcEEEecCCceEEEEcccCcchhhhhhhh
Confidence 99999999998765544111 1 112366777654 457899999999999999999887776543
No 143
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.85 E-value=5e-20 Score=148.93 Aligned_cols=214 Identities=20% Similarity=0.288 Sum_probs=162.5
Q ss_pred eeeeCccccEEEEEECcCCCEEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCCeEEE
Q 026765 14 REYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRL 93 (233)
Q Consensus 14 ~~~~~H~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~i 93 (233)
...+||.+.|+.++|+|.|++|+|+|.|.|-|++-.-..........+..-|.....|++|-+. ...++||...+.+|+
T Consensus 355 ~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~c~~~vn~-~~~FVSgAdEKVlRv 433 (764)
T KOG1063|consen 355 PVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLTCLSFVNE-DLQFVSGADEKVLRV 433 (764)
T ss_pred cccccccccceeeeecCCCCEEEEeccccceeeecccccccceeeecccccccccceeeehccC-Cceeeecccceeeee
Confidence 4568999999999999999999999999999998653212222222334457778999999874 456789999999999
Q ss_pred EECCCC--------------------------------eeee------------eee-----------------------
Q 026765 94 WDARSG--------------------------------KCSQ------------QAE----------------------- 106 (233)
Q Consensus 94 wd~~~~--------------------------------~~~~------------~~~----------------------- 106 (233)
|+.... +... ..+
T Consensus 434 F~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~t 513 (764)
T KOG1063|consen 434 FEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNT 513 (764)
T ss_pred ecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeecccccCchhccCCChHHHHHHhc
Confidence 976310 0000 000
Q ss_pred ----------ecCCeeEEEECCCCCeEEEEcCCC-----cEEEEEcCCCeeeeeee-cCceeeEEEECCCCCEEEEEeCC
Q 026765 107 ----------LSGENINITYKPDGTHIAVGNRDD-----ELTILDVRKFKPIHRRK-FGYEVNEIAWNMTGEMFFLTTGN 170 (233)
Q Consensus 107 ----------~~~~~~~~~~~~~~~~l~~~~~d~-----~i~i~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 170 (233)
+.-++++++.+|+++.+++++... .|.+|+..+......++ +...|+.++|+|+|+++++.+.|
T Consensus 514 LwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~~L~~HsLTVT~l~FSpdg~~LLsvsRD 593 (764)
T KOG1063|consen 514 LWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQELEGHSLTVTRLAFSPDGRYLLSVSRD 593 (764)
T ss_pred cchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhheecccceEEEEEEECCCCcEEEEeecC
Confidence 001245788999999999988653 48899988877766443 56789999999999999999999
Q ss_pred CeEEEEecCCc-e---eeeEEeeecCceeEEEECCCCCEEEEeeCCCcEEEEecCCc--EEEEe
Q 026765 171 GTVEVLTYPSL-R---PLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEM--LCVRT 228 (233)
Q Consensus 171 ~~v~~~~~~~~-~---~~~~~~~~~~~v~~i~~~p~~~~las~s~dg~v~iwd~~~~--~~i~~ 228 (233)
.++.+|..... . .+.....|..-|++++|+|++.++||+|.|.+|+||..... .++..
T Consensus 594 Rt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~~d~~i~~ 657 (764)
T KOG1063|consen 594 RTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEEPDLRDKYISR 657 (764)
T ss_pred ceEEeeeeecccchhhhhccccccceEEEEcccCcccceeEEecCCceEEEEeccCchhhhhhh
Confidence 99999976321 1 23336679999999999999999999999999999999877 55544
No 144
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.85 E-value=4.7e-20 Score=147.91 Aligned_cols=222 Identities=18% Similarity=0.257 Sum_probs=153.4
Q ss_pred CCCCCCCCCccc------eeeeCccccEEEEEECcCC-CEEEEEeCCCCEEEEecccCCCCc------------------
Q 026765 2 GESSIPFKNLHS------REYTGHKKKVHSVAWNCTG-TKLASGSVDQTARVWHIEPHGHGK------------------ 56 (233)
Q Consensus 2 ~~~~~~~~~~~~------~~~~~H~~~V~~~~~~~~~-~~l~s~~~D~~v~vW~~~~~~~~~------------------ 56 (233)
|++++.++.+.. +.+.||.+.|.+++|.|.+ ..|++|+.||.|.|||........
T Consensus 120 GDsT~r~Wdvk~s~l~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptp 199 (720)
T KOG0321|consen 120 GDSTIRPWDVKTSRLVGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTP 199 (720)
T ss_pred CCceeeeeeeccceeecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCC
Confidence 456666666543 3477999999999999976 578999999999999975422000
Q ss_pred --ee---eEEEecCcCcE----EEEEEcCCCCCEEEEEeC-CCeEEEEECCCCeeeeeee------e------cCCeeEE
Q 026765 57 --VK---DIELRGHADSV----DQLCWDPKHADLIATASG-DKTVRLWDARSGKCSQQAE------L------SGENINI 114 (233)
Q Consensus 57 --~~---~~~~~~h~~~v----~~~~~~~~~~~~l~sg~~-d~~i~iwd~~~~~~~~~~~------~------~~~~~~~ 114 (233)
.. ....+.+...| +.+.| .+ ...|++++. |+.|+|||++...+..... . .....++
T Consensus 200 skp~~kr~~k~kA~s~ti~ssvTvv~f-kD-e~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL 277 (720)
T KOG0321|consen 200 SKPLKKRIRKWKAASNTIFSSVTVVLF-KD-ESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNL 277 (720)
T ss_pred CchhhccccccccccCceeeeeEEEEE-ec-cceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEE
Confidence 00 00122344444 44444 44 356778777 9999999998765432211 1 1123467
Q ss_pred EECCCCCeEEEEcCCCcEEEEEcCCCeeeeeeecCc-e----eeEEEECCCCCEEEEEeCCCeEEEEecCCce-eeeEEe
Q 026765 115 TYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGY-E----VNEIAWNMTGEMFFLTTGNGTVEVLTYPSLR-PLDTVV 188 (233)
Q Consensus 115 ~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~-~----~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~ 188 (233)
..+..|.++.+.+.|+.|.+|+++.........+.. . -..-..++++.++++++.+...++|.....+ +...+.
T Consensus 278 ~lDssGt~L~AsCtD~sIy~ynm~s~s~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~l~ 357 (720)
T KOG0321|consen 278 ILDSSGTYLFASCTDNSIYFYNMRSLSISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAPPALLL 357 (720)
T ss_pred EecCCCCeEEEEecCCcEEEEeccccCcCchhhccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCccCChhhhh
Confidence 777788998888889999999998654322211111 1 1122457899999999999999999987543 455577
Q ss_pred eecCceeEEEECCCC-CEEEEeeCCCcEEEEecCCcEE
Q 026765 189 AHTAGCYCIAIDPMG-RYFAVGSADSLVSLWDISEMLC 225 (233)
Q Consensus 189 ~~~~~v~~i~~~p~~-~~las~s~dg~v~iwd~~~~~~ 225 (233)
+|...|++++|.|.. .-+|++++|..++||++..+.+
T Consensus 358 Ght~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~~~l~ 395 (720)
T KOG0321|consen 358 GHTREVTTVRWLPSATTPVATCSDDFRVKIWRLSNGLE 395 (720)
T ss_pred CcceEEEEEeeccccCCCceeeccCcceEEEeccCchh
Confidence 999999999998865 3477789999999999976643
No 145
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.85 E-value=3.7e-19 Score=143.96 Aligned_cols=207 Identities=18% Similarity=0.318 Sum_probs=152.7
Q ss_pred ceeeeCccccEEEEEECcCCCEEEEEeCCCCEEEEecccCCC------CceeeEEE------------------------
Q 026765 13 SREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGH------GKVKDIEL------------------------ 62 (233)
Q Consensus 13 ~~~~~~H~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~------~~~~~~~~------------------------ 62 (233)
.+++.+|++.|+|++|+.+|+++|||++|+.|.+|...-.+. ..++++.+
T Consensus 46 lqtLKgHKDtVycVAys~dGkrFASG~aDK~VI~W~~klEG~LkYSH~D~IQCMsFNP~~h~LasCsLsdFglWS~~qK~ 125 (1081)
T KOG1538|consen 46 LQPLKGHKDTVYCVAYAKDGKRFASGSADKSVIIWTSKLEGILKYSHNDAIQCMSFNPITHQLASCSLSDFGLWSPEQKS 125 (1081)
T ss_pred ccccccccceEEEEEEccCCceeccCCCceeEEEecccccceeeeccCCeeeEeecCchHHHhhhcchhhccccChhhhh
Confidence 357899999999999999999999999999999998542211 01111111
Q ss_pred -ecC--cCcEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeeee---ecCCeeEEEECCCC-----CeEEEEcCCCc
Q 026765 63 -RGH--ADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAE---LSGENINITYKPDG-----THIAVGNRDDE 131 (233)
Q Consensus 63 -~~h--~~~v~~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~---~~~~~~~~~~~~~~-----~~l~~~~~d~~ 131 (233)
..| ...+.+++|..+| .+++-|-.||+|.+-+-.......... ...++++++|+|.. ..+++.....+
T Consensus 126 V~K~kss~R~~~CsWtnDG-qylalG~~nGTIsiRNk~gEek~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qT 204 (1081)
T KOG1538|consen 126 VSKHKSSSRIICCSWTNDG-QYLALGMFNGTISIRNKNGEEKVKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQT 204 (1081)
T ss_pred HHhhhhheeEEEeeecCCC-cEEEEeccCceEEeecCCCCcceEEeCCCCCCCCceEEEecCCCCCCccceEEEEeccce
Confidence 011 1234555666554 567788888888887654333222222 22456789998863 46788888888
Q ss_pred EEEEEcCCCeeeeeeecCceeeEEEECCCCCEEEEEeCCCeEEEEecCCceeeeEEeeecCceeEEEECCCCCEEEEeeC
Q 026765 132 LTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSA 211 (233)
Q Consensus 132 i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~las~s~ 211 (233)
+.++.+.....-.....+++..++.+-++|+++++|+.++.+++|.- .+-.+.++...+..|++++..|++++++.|..
T Consensus 205 LSFy~LsG~~Igk~r~L~FdP~CisYf~NGEy~LiGGsdk~L~~fTR-~GvrLGTvg~~D~WIWtV~~~PNsQ~v~~GCq 283 (1081)
T KOG1538|consen 205 LSFYQLSGKQIGKDRALNFDPCCISYFTNGEYILLGGSDKQLSLFTR-DGVRLGTVGEQDSWIWTVQAKPNSQYVVVGCQ 283 (1081)
T ss_pred eEEEEecceeecccccCCCCchhheeccCCcEEEEccCCCceEEEee-cCeEEeeccccceeEEEEEEccCCceEEEEEc
Confidence 88888765433335556778889999999999999999999999974 45566666667889999999999999999999
Q ss_pred CCcEEEEecC
Q 026765 212 DSLVSLWDIS 221 (233)
Q Consensus 212 dg~v~iwd~~ 221 (233)
||+|.-||+.
T Consensus 284 DGTiACyNl~ 293 (1081)
T KOG1538|consen 284 DGTIACYNLI 293 (1081)
T ss_pred cCeeehhhhH
Confidence 9999999875
No 146
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.84 E-value=1.5e-18 Score=136.11 Aligned_cols=199 Identities=19% Similarity=0.300 Sum_probs=159.1
Q ss_pred CccccEEEEEECcCCCEEEEEeCCCCEEEEecccCCC---------Cce---------------------------eeEE
Q 026765 18 GHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGH---------GKV---------------------------KDIE 61 (233)
Q Consensus 18 ~H~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~---------~~~---------------------------~~~~ 61 (233)
.|.+.|.+++.-.+|.+|- |+.|+.|..||-+-... +.+ ....
T Consensus 285 aH~ggv~~L~~lr~GtllS-GgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~ 363 (626)
T KOG2106|consen 285 AHDGGVFSLCMLRDGTLLS-GGKDRKIILWDDNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLT 363 (626)
T ss_pred ecCCceEEEEEecCccEee-cCccceEEeccccccccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEE
Confidence 8999999999988888775 99999999998321100 000 0113
Q ss_pred EecCcCcEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeeeeecCCeeEEEECCCCCeEEEEcCCCcEEEEEcCCCe
Q 026765 62 LRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRDDELTILDVRKFK 141 (233)
Q Consensus 62 ~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~ 141 (233)
..+|.+..-.++.+|.. ..+++++.|+.+++|+ ..+.........+..++.|+|.| .+++|...|...++|.++..
T Consensus 364 v~gh~delwgla~hps~-~q~~T~gqdk~v~lW~--~~k~~wt~~~~d~~~~~~fhpsg-~va~Gt~~G~w~V~d~e~~~ 439 (626)
T KOG2106|consen 364 VQGHGDELWGLATHPSK-NQLLTCGQDKHVRLWN--DHKLEWTKIIEDPAECADFHPSG-VVAVGTATGRWFVLDTETQD 439 (626)
T ss_pred EEecccceeeEEcCCCh-hheeeccCcceEEEcc--CCceeEEEEecCceeEeeccCcc-eEEEeeccceEEEEecccce
Confidence 45788888889999975 5678999999999999 44555555667778899999999 99999999999999999866
Q ss_pred eeeeeecCceeeEEEECCCCCEEEEEeCCCeEEEEecCC-ceeeeEEe-eecCceeEEEECCCCCEEEEeeCCCcEEEEe
Q 026765 142 PIHRRKFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPS-LRPLDTVV-AHTAGCYCIAIDPMGRYFAVGSADSLVSLWD 219 (233)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~-~~~~~v~~i~~~p~~~~las~s~dg~v~iwd 219 (233)
.+.....+.+++.+.++|+|.++++++.|+.+++|.... ++...... .+.++|+.+.|++|+++|.+-|-|-.|-.|.
T Consensus 440 lv~~~~d~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~gs~ithLDwS~Ds~~~~~~S~d~eiLyW~ 519 (626)
T KOG2106|consen 440 LVTIHTDNEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRKYSRVGKCSGSPITHLDWSSDSQFLVSNSGDYEILYWK 519 (626)
T ss_pred eEEEEecCCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCcEEEEeeeecCceeEEeeecCCCceEEeccCceEEEEEc
Confidence 665545577899999999999999999999999998753 44444333 3457899999999999999999999999995
Q ss_pred cC
Q 026765 220 IS 221 (233)
Q Consensus 220 ~~ 221 (233)
..
T Consensus 520 ~~ 521 (626)
T KOG2106|consen 520 PS 521 (626)
T ss_pred cc
Confidence 43
No 147
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.84 E-value=1.4e-19 Score=133.07 Aligned_cols=204 Identities=20% Similarity=0.326 Sum_probs=153.6
Q ss_pred CccccEEEEEECcCCC-----EEEEEeCCCCEEEEecccCCCCceeeEEE-----ecCcCcEEEEEEcCCCCCEEEEEeC
Q 026765 18 GHKKKVHSVAWNCTGT-----KLASGSVDQTARVWHIEPHGHGKVKDIEL-----RGHADSVDQLCWDPKHADLIATASG 87 (233)
Q Consensus 18 ~H~~~V~~~~~~~~~~-----~l~s~~~D~~v~vW~~~~~~~~~~~~~~~-----~~h~~~v~~~~~~~~~~~~l~sg~~ 87 (233)
.|.-+++.+.|.|+.+ +|||.+ ..+|+|.+............+ ..+..++++..|+..++++|.+.+-
T Consensus 94 d~~YP~tK~~wiPd~~g~~pdlLATs~--D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne~dp~~igtSSi 171 (364)
T KOG0290|consen 94 DHPYPVTKLMWIPDSKGVYPDLLATSS--DFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSI 171 (364)
T ss_pred CCCCCccceEecCCccccCcchhhccc--CeEEEEeccCcCCceehhhhhccCcccccCCcccccccccCCcceeEeecc
Confidence 5899999999999873 566654 689999987532211111111 2345689999999989999999999
Q ss_pred CCeEEEEECCCCe----eeeeeeecCCeeEEEECCCC-CeEEEEcCCCcEEEEEcCCCeee---eeeec-CceeeEEEEC
Q 026765 88 DKTVRLWDARSGK----CSQQAELSGENINITYKPDG-THIAVGNRDDELTILDVRKFKPI---HRRKF-GYEVNEIAWN 158 (233)
Q Consensus 88 d~~i~iwd~~~~~----~~~~~~~~~~~~~~~~~~~~-~~l~~~~~d~~i~i~d~~~~~~~---~~~~~-~~~~~~~~~~ 158 (233)
|-+..|||+.++. ..+...+..++..++|...+ ..+++.+.||.+++||+|..+.- ..-.. ..+...++|+
T Consensus 172 DTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE~p~~~~pLlRLswn 251 (364)
T KOG0290|consen 172 DTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYEDPSPSTPLLRLSWN 251 (364)
T ss_pred cCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEecCCCCCCcceeeccC
Confidence 9999999999873 23444567889999998865 46789999999999999875422 22112 3456778898
Q ss_pred CCCCEE-EEE-eCCCeEEEEecCC-ceeeeEEeeecCceeEEEECCCC-CEEEEeeCCCcEEEEecCCc
Q 026765 159 MTGEMF-FLT-TGNGTVEVLTYPS-LRPLDTVVAHTAGCYCIAIDPMG-RYFAVGSADSLVSLWDISEM 223 (233)
Q Consensus 159 ~~~~~~-~~~-~~~~~v~~~~~~~-~~~~~~~~~~~~~v~~i~~~p~~-~~las~s~dg~v~iwd~~~~ 223 (233)
+....+ ++- -....|.+.|.+. ..++..+.+|.+.|+.|+|.|.. .+|++|+.|..+-|||+.+.
T Consensus 252 kqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~ 320 (364)
T KOG0290|consen 252 KQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQM 320 (364)
T ss_pred cCCchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecCCcceEEEEecccc
Confidence 766544 333 3456788889875 45778899999999999999965 58999999999999999865
No 148
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.84 E-value=2.1e-19 Score=148.03 Aligned_cols=162 Identities=14% Similarity=0.239 Sum_probs=138.6
Q ss_pred CcEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeee----eecCCeeEEEECCCCCeEEEEcCCCcEEEEEcCCCee
Q 026765 67 DSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQA----ELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKP 142 (233)
Q Consensus 67 ~~v~~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~----~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~ 142 (233)
..+++++.++- +++.+.|...|.|-+||+++|-....+ ...+++..++.+.-++.+++++.+|-+.+||..+...
T Consensus 449 ~~~~av~vs~C-GNF~~IG~S~G~Id~fNmQSGi~r~sf~~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~l 527 (910)
T KOG1539|consen 449 INATAVCVSFC-GNFVFIGYSKGTIDRFNMQSGIHRKSFGDSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKVL 527 (910)
T ss_pred cceEEEEEecc-CceEEEeccCCeEEEEEcccCeeecccccCccccCceeEEEecCCCceEEEccCcceEEEEecCCcce
Confidence 34566666654 467777888888888888887655544 3456677788877778899999999999999988888
Q ss_pred eeeeecCceeeEEEECCCCCEEEEEeCCCeEEEEecCCceeeeEEeeecCceeEEEECCCCCEEEEeeCCCcEEEEecCC
Q 026765 143 IHRRKFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISE 222 (233)
Q Consensus 143 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~las~s~dg~v~iwd~~~ 222 (233)
......+..+..+..+.....++++..+-.|.++|..+.+..+.|.+|+..|++++|||+|++|++++.|++|++||+.+
T Consensus 528 ~~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nritd~~FS~DgrWlisasmD~tIr~wDlpt 607 (910)
T KOG1539|consen 528 KKSLRLGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRITDMTFSPDGRWLISASMDSTIRTWDLPT 607 (910)
T ss_pred eeeeccCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhccccceeeeEeCCCCcEEEEeecCCcEEEEeccC
Confidence 88888888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEEee
Q 026765 223 MLCVRTF 229 (233)
Q Consensus 223 ~~~i~~~ 229 (233)
+.+|--|
T Consensus 608 ~~lID~~ 614 (910)
T KOG1539|consen 608 GTLIDGL 614 (910)
T ss_pred cceeeeE
Confidence 9876543
No 149
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.84 E-value=9.7e-19 Score=145.43 Aligned_cols=192 Identities=20% Similarity=0.353 Sum_probs=150.9
Q ss_pred eeCccccEEEEEECcCCCEEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCCeEEEEE
Q 026765 16 YTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWD 95 (233)
Q Consensus 16 ~~~H~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~iwd 95 (233)
+...+-++++++|+.+|+++|.||.|-.||+-+..... ....+++|..+|.++.|+|.+ ++||+.+.||.|++||
T Consensus 92 L~Rftlp~r~~~v~g~g~~iaagsdD~~vK~~~~~D~s----~~~~lrgh~apVl~l~~~p~~-~fLAvss~dG~v~iw~ 166 (933)
T KOG1274|consen 92 LARFTLPIRDLAVSGSGKMIAAGSDDTAVKLLNLDDSS----QEKVLRGHDAPVLQLSYDPKG-NFLAVSSCDGKVQIWD 166 (933)
T ss_pred eeeeeccceEEEEecCCcEEEeecCceeEEEEeccccc----hheeecccCCceeeeeEcCCC-CEEEEEecCceEEEEE
Confidence 34567899999999999999999999999998876533 334688999999999999985 7999999999999999
Q ss_pred CCCCeeeeeeee---------cCCeeEEEECCCCCeEEEEcCCCcEEEEEcCCCeeeeeeec---CceeeEEEECCCCCE
Q 026765 96 ARSGKCSQQAEL---------SGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKF---GYEVNEIAWNMTGEM 163 (233)
Q Consensus 96 ~~~~~~~~~~~~---------~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~---~~~~~~~~~~~~~~~ 163 (233)
+.++.+...+.. ......++|+|++..+++...|+.|.+|+...+.....+.. ......+.|+|.|+|
T Consensus 167 ~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPnG~Y 246 (933)
T KOG1274|consen 167 LQDGILSKTLTGVDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSPNGKY 246 (933)
T ss_pred cccchhhhhcccCCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeecccccccceEEEEEcCCCcE
Confidence 998876544321 11223489999998999999999999999888776655442 234788999999999
Q ss_pred EEEEeCCCeEEEEecCCceeeeEEeeecCceeEEEECCCCCEEEEeeCCCcEE
Q 026765 164 FFLTTGNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVS 216 (233)
Q Consensus 164 ~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~las~s~dg~v~ 216 (233)
+++++-+|.|.+||.++.+. ......|.+++|-|+.+-+-.-...|..-
T Consensus 247 iAAs~~~g~I~vWnv~t~~~----~~~~~~Vc~~aw~p~~n~it~~~~~g~~~ 295 (933)
T KOG1274|consen 247 IAASTLDGQILVWNVDTHER----HEFKRAVCCEAWKPNANAITLITALGTLG 295 (933)
T ss_pred EeeeccCCcEEEEecccchh----ccccceeEEEecCCCCCeeEEEeeccccc
Confidence 99999999999999876222 12235688999999887655444444433
No 150
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.83 E-value=8.5e-19 Score=130.38 Aligned_cols=213 Identities=16% Similarity=0.289 Sum_probs=157.6
Q ss_pred ceeeeCccccEEEEEECcCCCEEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCCeEE
Q 026765 13 SREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVR 92 (233)
Q Consensus 13 ~~~~~~H~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~ 92 (233)
.+.+.+|..+|++++||++|..|+|+|.|..|++||+.... ...++.+ ..+|..+.|+|...+.++..--+..-.
T Consensus 58 ar~lsaH~~pi~sl~WS~dgr~LltsS~D~si~lwDl~~gs--~l~rirf---~spv~~~q~hp~k~n~~va~~~~~sp~ 132 (405)
T KOG1273|consen 58 ARMLSAHVRPITSLCWSRDGRKLLTSSRDWSIKLWDLLKGS--PLKRIRF---DSPVWGAQWHPRKRNKCVATIMEESPV 132 (405)
T ss_pred hhhhhccccceeEEEecCCCCEeeeecCCceeEEEeccCCC--ceeEEEc---cCccceeeeccccCCeEEEEEecCCcE
Confidence 46789999999999999999999999999999999997543 3444444 478999999998887776666666555
Q ss_pred EEECCCCeeeeeeeec---CCee---EEEECCCCCeEEEEcCCCcEEEEEcCCCeeeeeeecC--ceeeEEEECCCCCEE
Q 026765 93 LWDARSGKCSQQAELS---GENI---NITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFG--YEVNEIAWNMTGEMF 164 (233)
Q Consensus 93 iwd~~~~~~~~~~~~~---~~~~---~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~--~~~~~~~~~~~~~~~ 164 (233)
+-++..+.- ..+... .... ...|.+.|+++++|...|.+.++|..+.+.+...+.. ..+..+.++..|+++
T Consensus 133 vi~~s~~~h-~~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~t~e~vas~rits~~~IK~I~~s~~g~~l 211 (405)
T KOG1273|consen 133 VIDFSDPKH-SVLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAETLECVASFRITSVQAIKQIIVSRKGRFL 211 (405)
T ss_pred EEEecCCce-eeccCCCccccccccccccccCCCCEEEEecCcceEEEEecchheeeeeeeechheeeeEEEEeccCcEE
Confidence 555544221 111111 1111 2458999999999999999999999988877665532 467888999999999
Q ss_pred EEEeCCCeEEEEecCCc---------eeeeEEeee--cCceeEEEECCCCCEEEEeeC-CCcEEEEecCCcEEEEeeec
Q 026765 165 FLTTGNGTVEVLTYPSL---------RPLDTVVAH--TAGCYCIAIDPMGRYFAVGSA-DSLVSLWDISEMLCVRTFTK 231 (233)
Q Consensus 165 ~~~~~~~~v~~~~~~~~---------~~~~~~~~~--~~~v~~i~~~p~~~~las~s~-dg~v~iwd~~~~~~i~~~~~ 231 (233)
+..+.|..|+.|+.+.. ++..++..- ...=.++.|+.+|.|+.+|+. ...++||.-..|..|+.+.+
T Consensus 212 iiNtsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~GsLVKILhG 290 (405)
T KOG1273|consen 212 IINTSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGDGEYVCAGSARAHALYIWEKSIGSLVKILHG 290 (405)
T ss_pred EEecCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhheeecCCccEEEeccccceeEEEEecCCcceeeeecC
Confidence 99999999999987521 111111110 111247889999999987774 46799999999999988764
No 151
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.83 E-value=2.4e-19 Score=137.55 Aligned_cols=193 Identities=24% Similarity=0.349 Sum_probs=145.6
Q ss_pred EEEEECcCCCEEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeee
Q 026765 24 HSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQ 103 (233)
Q Consensus 24 ~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~ 103 (233)
.+++|+++|..|++|+.||++|||+...- ....+...|...|.++.|+|++ ++|++-+.| ..+||+.+++-+..
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~----~t~l~e~~~~~eV~DL~FS~dg-k~lasig~d-~~~VW~~~~g~~~a 221 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSM----LTILEEIAHHAEVKDLDFSPDG-KFLASIGAD-SARVWSVNTGAALA 221 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcc----hhhhhhHhhcCccccceeCCCC-cEEEEecCC-ceEEEEeccCchhh
Confidence 68999999999999999999999995321 1233456788999999999985 688899999 99999999986555
Q ss_pred eeeecCCe---eEEEECCCC---C-eE-EEEcCCCcEEEEEcCCCeee---ee---eecCceeeEEEECCCCCEEEEEeC
Q 026765 104 QAELSGEN---INITYKPDG---T-HI-AVGNRDDELTILDVRKFKPI---HR---RKFGYEVNEIAWNMTGEMFFLTTG 169 (233)
Q Consensus 104 ~~~~~~~~---~~~~~~~~~---~-~l-~~~~~d~~i~i~d~~~~~~~---~~---~~~~~~~~~~~~~~~~~~~~~~~~ 169 (233)
........ ..+.|..++ . ++ +.-...+.+..+|+.....- .. ..-...+.+++.+.+|+++++|+.
T Consensus 222 ~~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~ 301 (398)
T KOG0771|consen 222 RKTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTM 301 (398)
T ss_pred hcCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEecc
Confidence 44422222 236676665 2 22 23334466777776433221 10 111236899999999999999999
Q ss_pred CCeEEEEecCCceeeeEE-eeecCceeEEEECCCCCEEEEeeCCCcEEEEecCC
Q 026765 170 NGTVEVLTYPSLRPLDTV-VAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISE 222 (233)
Q Consensus 170 ~~~v~~~~~~~~~~~~~~-~~~~~~v~~i~~~p~~~~las~s~dg~v~iwd~~~ 222 (233)
+|.|.+++..+.+...-+ ..|..-|+.+.|+|+.+++++-+.|..+.|..+..
T Consensus 302 dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~v 355 (398)
T KOG0771|consen 302 DGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLAV 355 (398)
T ss_pred CCcEEEEEeceeeeeEeehhhheeeeeeEEEcCCcCcccccccCCceeEEEEee
Confidence 999999999877665543 46999999999999999999999999999988765
No 152
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.81 E-value=1.3e-18 Score=134.74 Aligned_cols=208 Identities=17% Similarity=0.225 Sum_probs=150.7
Q ss_pred eeeeCccccEEEEEECcCC-CEEEEEeCCCCEEEEecccCCCC--------ce-----------------------e---
Q 026765 14 REYTGHKKKVHSVAWNCTG-TKLASGSVDQTARVWHIEPHGHG--------KV-----------------------K--- 58 (233)
Q Consensus 14 ~~~~~H~~~V~~~~~~~~~-~~l~s~~~D~~v~vW~~~~~~~~--------~~-----------------------~--- 58 (233)
..|..|.++|.++.|+|.+ .++.+.|+||++|+=|++..-.. .. .
T Consensus 228 ~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~~~vl~~~~~G~f~~iD 307 (498)
T KOG4328|consen 228 YLFTPHSGPVSGLKFSPANTSQIYSSSYDGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAESRSVLFGDNVGNFNVID 307 (498)
T ss_pred EEeccCCccccceEecCCChhheeeeccCceeeeeeecchhhHHHhhcCccceeeeeccccCCCccEEEeecccceEEEE
Confidence 3467899999999999976 68999999999999886431100 00 0
Q ss_pred -------eEEEecCcCcEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCee-----eeeeeecCCeeEEEECCCCCeEEEE
Q 026765 59 -------DIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKC-----SQQAELSGENINITYKPDGTHIAVG 126 (233)
Q Consensus 59 -------~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~-----~~~~~~~~~~~~~~~~~~~~~l~~~ 126 (233)
...+.-|...|..++++|..+.+|++|+.|++++|||++.-+. .....+...+.++.|+|++-.|++.
T Consensus 308 ~R~~~s~~~~~~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~gtl~TT 387 (498)
T KOG4328|consen 308 LRTDGSEYENLRLHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGGTLLTT 387 (498)
T ss_pred eecCCccchhhhhhhcccceeecCCCCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCCceEee
Confidence 0012347779999999999999999999999999999975332 2223334455678899998889999
Q ss_pred cCCCcEEEEEc----CCCeeeeeeecCc------eeeEEEECCCCCEEEEEeCCCeEEEEecCCceeeeEEeeec-Ccee
Q 026765 127 NRDDELTILDV----RKFKPIHRRKFGY------EVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAHT-AGCY 195 (233)
Q Consensus 127 ~~d~~i~i~d~----~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~-~~v~ 195 (233)
+.|..|+|||. ....+...+.+.. ......|.|+.++++++---..|-++|...++.+..+..-. ..|.
T Consensus 388 ~~D~~IRv~dss~~sa~~~p~~~I~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q~v~el~~P~~~tI~ 467 (498)
T KOG4328|consen 388 CQDNEIRVFDSSCISAKDEPLGTIPHNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQMVCELHDPESSTIP 467 (498)
T ss_pred ccCCceEEeecccccccCCccceeeccCcccccccchhheeCCCccEEEEeccCcceeEEcCCCCEEeeeccCccccccc
Confidence 99999999997 3334443444322 24456899999999999988899999987766555433222 2344
Q ss_pred E-EEECCCCC-EEEEeeCCCcEEEEecC
Q 026765 196 C-IAIDPMGR-YFAVGSADSLVSLWDIS 221 (233)
Q Consensus 196 ~-i~~~p~~~-~las~s~dg~v~iwd~~ 221 (233)
+ +.|+|.+. ++|.++..|.|.||--+
T Consensus 468 ~vn~~HP~~~~~~aG~~s~Gki~vft~k 495 (498)
T KOG4328|consen 468 SVNEFHPMRDTLAAGGNSSGKIYVFTNK 495 (498)
T ss_pred cceeecccccceeccCCccceEEEEecC
Confidence 4 57999988 44555567899998644
No 153
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.81 E-value=3.4e-18 Score=134.00 Aligned_cols=186 Identities=21% Similarity=0.279 Sum_probs=152.0
Q ss_pred eeeeCccccEEEEEECcCCCEEEEEeCCCCEEEEecccCCCCceeeEEEe-cCcCcEEEEEEcCCCCCEEEEEeCCCeEE
Q 026765 14 REYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELR-GHADSVDQLCWDPKHADLIATASGDKTVR 92 (233)
Q Consensus 14 ~~~~~H~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~~l~sg~~d~~i~ 92 (233)
+.+.+|+..|+++.++....+||+++..|.|.|..+.+.. + ..++. +....|+-+.|+|....+|.+++.+|.|.
T Consensus 115 r~lkdh~stvt~v~YN~~DeyiAsvs~gGdiiih~~~t~~--~--tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~Vt 190 (673)
T KOG4378|consen 115 RFLKDHQSTVTYVDYNNTDEYIASVSDGGDIIIHGTKTKQ--K--TTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVT 190 (673)
T ss_pred hhccCCcceeEEEEecCCcceeEEeccCCcEEEEecccCc--c--ccceecCCCCeEEEeecccccceeeEeeccCCeEE
Confidence 5678999999999999999999999999999999876422 1 11232 22456778999999888999999999999
Q ss_pred EEECCCCeeeeeee-ec-CCeeEEEECCCC-CeEEEEcCCCcEEEEEcCCCeeeeeeecCceeeEEEECCCCCEEEEEeC
Q 026765 93 LWDARSGKCSQQAE-LS-GENINITYKPDG-THIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTG 169 (233)
Q Consensus 93 iwd~~~~~~~~~~~-~~-~~~~~~~~~~~~-~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (233)
+||+........+. .+ .+...++|+|.. ..|++.+.|.+|.+||.+.......+....+...++|.++|-++++|..
T Consensus 191 lwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~y~~Plstvaf~~~G~~L~aG~s 270 (673)
T KOG4378|consen 191 LWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLTYSHPLSTVAFSECGTYLCAGNS 270 (673)
T ss_pred EEeccCCCcccchhhhccCCcCcceecCCccceEEEecccceEEEeecccccccceeeecCCcceeeecCCceEEEeecC
Confidence 99997665544332 22 333458999965 5677899999999999998777777777889999999999999999999
Q ss_pred CCeEEEEecCC-ceeeeEEeeecCceeEEEECCCC
Q 026765 170 NGTVEVLTYPS-LRPLDTVVAHTAGCYCIAIDPMG 203 (233)
Q Consensus 170 ~~~v~~~~~~~-~~~~~~~~~~~~~v~~i~~~p~~ 203 (233)
.|.+..||.+. ..++..+..|...|++++|-|.-
T Consensus 271 ~G~~i~YD~R~~k~Pv~v~sah~~sVt~vafq~s~ 305 (673)
T KOG4378|consen 271 KGELIAYDMRSTKAPVAVRSAHDASVTRVAFQPSP 305 (673)
T ss_pred CceEEEEecccCCCCceEeeecccceeEEEeeecc
Confidence 99999999974 46788888999999999998753
No 154
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.81 E-value=2.7e-17 Score=132.98 Aligned_cols=203 Identities=15% Similarity=0.262 Sum_probs=162.1
Q ss_pred eeeeCc-cccEEEEEECcCCCEEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCCeEE
Q 026765 14 REYTGH-KKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVR 92 (233)
Q Consensus 14 ~~~~~H-~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~ 92 (233)
.++.|+ ...|-+++|+ ++.+|+|.+.+|+|.=||+.... ..........+|-+++.+|.+ ..++.|+.||.+.
T Consensus 62 ~vi~g~~drsIE~L~W~-e~~RLFS~g~sg~i~EwDl~~lk----~~~~~d~~gg~IWsiai~p~~-~~l~IgcddGvl~ 135 (691)
T KOG2048|consen 62 PVIHGPEDRSIESLAWA-EGGRLFSSGLSGSITEWDLHTLK----QKYNIDSNGGAIWSIAINPEN-TILAIGCDDGVLY 135 (691)
T ss_pred EEEecCCCCceeeEEEc-cCCeEEeecCCceEEEEecccCc----eeEEecCCCcceeEEEeCCcc-ceEEeecCCceEE
Confidence 455565 5679999999 67888899999999999986422 233455667899999999986 5677889999777
Q ss_pred EEECCCCeeeeeee---ecCCeeEEEECCCCCeEEEEcCCCcEEEEEcCCCeeeeeeec-----Cc----eeeEEEECCC
Q 026765 93 LWDARSGKCSQQAE---LSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKF-----GY----EVNEIAWNMT 160 (233)
Q Consensus 93 iwd~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~-----~~----~~~~~~~~~~ 160 (233)
.+++..+....... ..+.+.++.|+|++..++.|+.||.|++||..+.+.++.... .. -+.++.+= .
T Consensus 136 ~~s~~p~~I~~~r~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~L-r 214 (691)
T KOG2048|consen 136 DFSIGPDKITYKRSLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFL-R 214 (691)
T ss_pred EEecCCceEEEEeecccccceEEEEEecCCccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEe-e
Confidence 78887776544322 246678999999999999999999999999988776652221 11 23444443 4
Q ss_pred CCEEEEEeCCCeEEEEecCCceeeeEEeeecCceeEEEECCCCCEEEEeeCCCcEEEEecCCc
Q 026765 161 GEMFFLTTGNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEM 223 (233)
Q Consensus 161 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~las~s~dg~v~iwd~~~~ 223 (233)
...+++|...|+|.+||...+..++.+..|.+.|.+++..+++.++.+++-|+.|.-|.....
T Consensus 215 d~tI~sgDS~G~V~FWd~~~gTLiqS~~~h~adVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~ 277 (691)
T KOG2048|consen 215 DSTIASGDSAGTVTFWDSIFGTLIQSHSCHDADVLALAVADNEDRVFSAGVDPKIIQYSLTTN 277 (691)
T ss_pred cCcEEEecCCceEEEEcccCcchhhhhhhhhcceeEEEEcCCCCeEEEccCCCceEEEEecCC
Confidence 568999999999999999999999999999999999999999999999999999988887655
No 155
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.81 E-value=1.8e-17 Score=135.58 Aligned_cols=209 Identities=17% Similarity=0.180 Sum_probs=138.9
Q ss_pred ceeeeCccccEEEEEECcCCCEEEEEeCC---CCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCC
Q 026765 13 SREYTGHKKKVHSVAWNCTGTKLASGSVD---QTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDK 89 (233)
Q Consensus 13 ~~~~~~H~~~V~~~~~~~~~~~l~s~~~D---~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~ 89 (233)
.+.+..|...+...+|+|+|++|+.++.+ ..|.+||+..... .....+.+| ...++|+|++..++++.+.++
T Consensus 196 ~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~--~~l~~~~g~---~~~~~wSPDG~~La~~~~~~g 270 (429)
T PRK01742 196 QFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGAR--KVVASFRGH---NGAPAFSPDGSRLAFASSKDG 270 (429)
T ss_pred ceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCce--EEEecCCCc---cCceeECCCCCEEEEEEecCC
Confidence 45667888899999999999999988754 3699999864221 111123333 346799998766655556788
Q ss_pred eEEEE--ECCCCeeeeeeeecCCeeEEEECCCCCeEEEEc-CCCcEEEEEcCCCe-eeeeeecCceeeEEEECCCCCEEE
Q 026765 90 TVRLW--DARSGKCSQQAELSGENINITYKPDGTHIAVGN-RDDELTILDVRKFK-PIHRRKFGYEVNEIAWNMTGEMFF 165 (233)
Q Consensus 90 ~i~iw--d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~d~~i~i~d~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 165 (233)
.+.|| |+.++................|+|||+.|+..+ .++...+|++.... ........ . ....|+|+|+.++
T Consensus 271 ~~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l~~~-~-~~~~~SpDG~~ia 348 (429)
T PRK01742 271 VLNIYVMGANGGTPSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLVGGR-G-YSAQISADGKTLV 348 (429)
T ss_pred cEEEEEEECCCCCeEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEecCC-C-CCccCCCCCCEEE
Confidence 76665 665555433222233445689999999877554 56778888764321 11111111 1 4567999999998
Q ss_pred EEeCCCeEEEEecCCceeeeEEeeecCceeEEEECCCCCEEEEeeCCCcEEEEec--CCcEEEEeeec
Q 026765 166 LTTGNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDI--SEMLCVRTFTK 231 (233)
Q Consensus 166 ~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~las~s~dg~v~iwd~--~~~~~i~~~~~ 231 (233)
..+.++ +..||..+++... +..+ ......+|+|+|++|+.++.++.+.+|++ .++.+++++..
T Consensus 349 ~~~~~~-i~~~Dl~~g~~~~-lt~~-~~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G~~~~~l~~ 413 (429)
T PRK01742 349 MINGDN-VVKQDLTSGSTEV-LSST-FLDESPSISPNGIMIIYSSTQGLGKVLQLVSADGRFKARLPG 413 (429)
T ss_pred EEcCCC-EEEEECCCCCeEE-ecCC-CCCCCceECCCCCEEEEEEcCCCceEEEEEECCCCceEEccC
Confidence 887765 5558887665432 2211 12356789999999999999999988886 35777777754
No 156
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.81 E-value=4.6e-18 Score=127.00 Aligned_cols=200 Identities=22% Similarity=0.340 Sum_probs=151.9
Q ss_pred CccccEEEEEECcC----CCEEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCCeEEE
Q 026765 18 GHKKKVHSVAWNCT----GTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRL 93 (233)
Q Consensus 18 ~H~~~V~~~~~~~~----~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~i 93 (233)
.|...-+.++|+.+ +.++|.||.-|.|||.|+.... ..-.+.+|...|+.+.++|..++++++|+.|..||+
T Consensus 87 d~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~----~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRl 162 (385)
T KOG1034|consen 87 DHDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQ----CSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRL 162 (385)
T ss_pred CCCcceEEEEEEecCCCCCeeEEeecceeEEEEEecchhh----hccceeccCccchhhhcCCCCCcEEEEecCCceEEE
Confidence 47888899999765 3478999999999999987532 223578999999999999999999999999999999
Q ss_pred EECCCCeeeeeeee----cCCeeEEEECCCCCeEEEEcCCCcEEEEEcCCCe------------------eeeeee----
Q 026765 94 WDARSGKCSQQAEL----SGENINITYKPDGTHIAVGNRDDELTILDVRKFK------------------PIHRRK---- 147 (233)
Q Consensus 94 wd~~~~~~~~~~~~----~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~------------------~~~~~~---- 147 (233)
||+++..|+..+.. -.++.++.|+++|.+|++++.|..+.+|++...+ +.....
T Consensus 163 wnI~~~~Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp 242 (385)
T KOG1034|consen 163 WNIQTDVCVAVFGGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFP 242 (385)
T ss_pred EeccCCeEEEEecccccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccc
Confidence 99999998876542 2467889999999999999999999999975110 000000
Q ss_pred -------cC------------------------------------------------------ceeeE--EEECCCCCEE
Q 026765 148 -------FG------------------------------------------------------YEVNE--IAWNMTGEMF 164 (233)
Q Consensus 148 -------~~------------------------------------------------------~~~~~--~~~~~~~~~~ 164 (233)
+. .++.. .++.+-.+.+
T Consensus 243 ~fst~diHrnyVDCvrw~gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~l 322 (385)
T KOG1034|consen 243 DFSTTDIHRNYVDCVRWFGDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKML 322 (385)
T ss_pred cccccccccchHHHHHHHhhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHH
Confidence 00 00111 1234445667
Q ss_pred EEEeCCCeEEEEecCCceee--eEEee--ecCceeEEEECCCCCEEEEeeCCCcEEEEecC
Q 026765 165 FLTTGNGTVEVLTYPSLRPL--DTVVA--HTAGCYCIAIDPMGRYFAVGSADSLVSLWDIS 221 (233)
Q Consensus 165 ~~~~~~~~v~~~~~~~~~~~--~~~~~--~~~~v~~i~~~p~~~~las~s~dg~v~iwd~~ 221 (233)
++|...|.+.+||++..++. .++.. ....|...+|+-++..|+....|++|--||..
T Consensus 323 a~gnq~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdrv 383 (385)
T KOG1034|consen 323 ALGNQSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDRV 383 (385)
T ss_pred hhccCCCcEEEEECCCCCCccCceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEEee
Confidence 88999999999999876653 22222 23457889999999999999999999999864
No 157
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.80 E-value=2.4e-18 Score=134.89 Aligned_cols=201 Identities=15% Similarity=0.288 Sum_probs=155.8
Q ss_pred EEEEECcCCCEEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeee
Q 026765 24 HSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQ 103 (233)
Q Consensus 24 ~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~ 103 (233)
.||+-....-++++||..++|+|||+.. +.....+++|.+.|+++.++-.+ .+|++++..|.|.|..+.++....
T Consensus 83 ~Cv~~~s~S~y~~sgG~~~~Vkiwdl~~----kl~hr~lkdh~stvt~v~YN~~D-eyiAsvs~gGdiiih~~~t~~~tt 157 (673)
T KOG4378|consen 83 FCVACASQSLYEISGGQSGCVKIWDLRA----KLIHRFLKDHQSTVTYVDYNNTD-EYIASVSDGGDIIIHGTKTKQKTT 157 (673)
T ss_pred HHHhhhhcceeeeccCcCceeeehhhHH----HHHhhhccCCcceeEEEEecCCc-ceeEEeccCCcEEEEecccCcccc
Confidence 3444445568999999999999999964 22333578999999999998665 578999999999999998887666
Q ss_pred eeeec-CCee-EEEECCCCCeEE-EEcCCCcEEEEEcCCCeeeeee--ecCceeeEEEECCCCCEEE-EEeCCCeEEEEe
Q 026765 104 QAELS-GENI-NITYKPDGTHIA-VGNRDDELTILDVRKFKPIHRR--KFGYEVNEIAWNMTGEMFF-LTTGNGTVEVLT 177 (233)
Q Consensus 104 ~~~~~-~~~~-~~~~~~~~~~l~-~~~~d~~i~i~d~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~-~~~~~~~v~~~~ 177 (233)
.+... +..+ -+.|+|..+.++ +++.+|.+.+||+....+.+.. .+..+...++|+|....++ +.+-|..+.+||
T Consensus 158 ~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD 237 (673)
T KOG4378|consen 158 TFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYD 237 (673)
T ss_pred ceecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccchhhhccCCcCcceecCCccceEEEecccceEEEee
Confidence 66554 3444 478999877655 6778899999999877776543 3456778899999876654 557799999999
Q ss_pred cCCceeeeEEeeecCceeEEEECCCCCEEEEeeCCCcEEEEecCCc-EEEEeee
Q 026765 178 YPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEM-LCVRTFT 230 (233)
Q Consensus 178 ~~~~~~~~~~~~~~~~v~~i~~~p~~~~las~s~dg~v~iwd~~~~-~~i~~~~ 230 (233)
....+....+. ...+..+++|+++|.+|++|+..|.|..||++.. .++.+..
T Consensus 238 ~~s~~s~~~l~-y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~s 290 (673)
T KOG4378|consen 238 IRSQASTDRLT-YSHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAPVAVRS 290 (673)
T ss_pred cccccccceee-ecCCcceeeecCCceEEEeecCCceEEEEecccCCCCceEee
Confidence 98776666655 3456789999999999999999999999999844 3454443
No 158
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.80 E-value=1.6e-18 Score=133.03 Aligned_cols=163 Identities=21% Similarity=0.223 Sum_probs=133.8
Q ss_pred EecCcCcEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCee---eeeeee-cCCeeEEEECCCCCeEEEEcCCCcEEEEEc
Q 026765 62 LRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKC---SQQAEL-SGENINITYKPDGTHIAVGNRDDELTILDV 137 (233)
Q Consensus 62 ~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~---~~~~~~-~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~ 137 (233)
+..|.+.|-.+.|+++| ++||||+.|.+..+|++..... ..+... ..++.-+.|+||.+++++|+.+..+.+||.
T Consensus 220 l~~htdEVWfl~FS~nG-kyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDdryLlaCg~~e~~~lwDv 298 (519)
T KOG0293|consen 220 LQDHTDEVWFLQFSHNG-KYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDDRYLLACGFDEVLSLWDV 298 (519)
T ss_pred HhhCCCcEEEEEEcCCC-eeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCCCeEEecCchHheeeccC
Confidence 56799999999999975 6889999999999998755432 333333 345566899999999999999999999999
Q ss_pred CCCeeeeeeecC--ceeeEEEECCCCCEEEEEeCCCeEEEEecCCceeeeEEee-ecCceeEEEECCCCCEEEEeeCCCc
Q 026765 138 RKFKPIHRRKFG--YEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVA-HTAGCYCIAIDPMGRYFAVGSADSL 214 (233)
Q Consensus 138 ~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~-~~~~v~~i~~~p~~~~las~s~dg~ 214 (233)
.++...+.+..+ ..+.+++|.|||..+++|+.|+.+..|+++.. ......+ ....|.+++.++||+++.+-..|..
T Consensus 299 ~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn-~~~~W~gvr~~~v~dlait~Dgk~vl~v~~d~~ 377 (519)
T KOG0293|consen 299 DTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGN-ILGNWEGVRDPKVHDLAITYDGKYVLLVTVDKK 377 (519)
T ss_pred CcchhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCCcc-hhhcccccccceeEEEEEcCCCcEEEEEecccc
Confidence 998887776655 67899999999999999999999999998643 2333322 2356899999999999999999999
Q ss_pred EEEEecCCcEEE
Q 026765 215 VSLWDISEMLCV 226 (233)
Q Consensus 215 v~iwd~~~~~~i 226 (233)
|++++.....++
T Consensus 378 i~l~~~e~~~dr 389 (519)
T KOG0293|consen 378 IRLYNREARVDR 389 (519)
T ss_pred eeeechhhhhhh
Confidence 999999876654
No 159
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.80 E-value=3.5e-18 Score=138.37 Aligned_cols=202 Identities=21% Similarity=0.334 Sum_probs=150.2
Q ss_pred eeeCccccEEEEEECcCCCEEEEEeCCC-----CEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCC
Q 026765 15 EYTGHKKKVHSVAWNCTGTKLASGSVDQ-----TARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDK 89 (233)
Q Consensus 15 ~~~~H~~~V~~~~~~~~~~~l~s~~~D~-----~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~ 89 (233)
.+-||-..|++++-+|+++.+||++... -|++|+... ..+..++.+|.-.|+.++|+|++ ++|++.+.|.
T Consensus 520 KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~----W~~~~~L~~HsLTVT~l~FSpdg-~~LLsvsRDR 594 (764)
T KOG1063|consen 520 KLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTAN----WLQVQELEGHSLTVTRLAFSPDG-RYLLSVSRDR 594 (764)
T ss_pred HhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccc----hhhhheecccceEEEEEEECCCC-cEEEEeecCc
Confidence 4569999999999999999999998654 378998653 22333688999999999999986 5778999999
Q ss_pred eEEEEECCCCeeee-e---eeec-CCeeEEEECCCCCeEEEEcCCCcEEEEEcCCC--eeee---eeecCceeeEEEECC
Q 026765 90 TVRLWDARSGKCSQ-Q---AELS-GENINITYKPDGTHIAVGNRDDELTILDVRKF--KPIH---RRKFGYEVNEIAWNM 159 (233)
Q Consensus 90 ~i~iwd~~~~~~~~-~---~~~~-~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~--~~~~---~~~~~~~~~~~~~~~ 159 (233)
++.+|......... . ...+ ..+.++.|+|+++++++++.|+++.+|..... +.+. ..+++..++.+++.+
T Consensus 595 t~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK~VkVW~~~~~~d~~i~~~a~~~~~~aVTAv~~~~ 674 (764)
T KOG1063|consen 595 TVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDKKVKVWEEPDLRDKYISRFACLKFSLAVTAVAYLP 674 (764)
T ss_pred eEEeeeeecccchhhhhccccccceEEEEcccCcccceeEEecCCceEEEEeccCchhhhhhhhchhccCCceeeEEeec
Confidence 99999875432111 1 1112 23457899999999999999999999987654 3222 234566788887755
Q ss_pred C-----CCEEEEEeCCCeEEEEecCCc---------ee---eeEEeeecCceeEEEECCCC----------CEEEEeeCC
Q 026765 160 T-----GEMFFLTTGNGTVEVLTYPSL---------RP---LDTVVAHTAGCYCIAIDPMG----------RYFAVGSAD 212 (233)
Q Consensus 160 ~-----~~~~~~~~~~~~v~~~~~~~~---------~~---~~~~~~~~~~v~~i~~~p~~----------~~las~s~d 212 (233)
- +..+++|-..|.+.+|..+.- .. .....+|...|+-+.|.|.. ..|++|+.|
T Consensus 675 ~~~~e~~~~vavGle~GeI~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~aV~rl~w~p~~~~~~~~~~~~l~la~~g~D 754 (764)
T KOG1063|consen 675 VDHNEKGDVVAVGLEKGEIVLWRRKREHRQVTVGTFNLDTRLCATIGPDSAVNRLLWRPTCSDDWVEDKEWLNLAVGGDD 754 (764)
T ss_pred cccccccceEEEEecccEEEEEecccccccccceeeeeccccccccChHHhhheeEeccccccccccccceeEEeeeccc
Confidence 3 336788999999999986410 00 11123467788999999762 357999999
Q ss_pred CcEEEEecC
Q 026765 213 SLVSLWDIS 221 (233)
Q Consensus 213 g~v~iwd~~ 221 (233)
..++|++++
T Consensus 755 ~~vri~nv~ 763 (764)
T KOG1063|consen 755 ESVRIFNVD 763 (764)
T ss_pred ceeEEeecc
Confidence 999999976
No 160
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.79 E-value=1.3e-17 Score=127.54 Aligned_cols=210 Identities=23% Similarity=0.336 Sum_probs=143.5
Q ss_pred ceeeeCccccEEEEEECcCCCEEEEEeCCCCEEEEeccc------C------CCCceeeEEEecCcCcEEEEEEcCCCCC
Q 026765 13 SREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEP------H------GHGKVKDIELRGHADSVDQLCWDPKHAD 80 (233)
Q Consensus 13 ~~~~~~H~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~------~------~~~~~~~~~~~~h~~~v~~~~~~~~~~~ 80 (233)
...+.+|..+|+++.|+|+|+.||||+.+|.|.+|.... . ...+.....+.+|...|+.++|+|++ .
T Consensus 58 ~s~Ls~H~~aVN~vRf~p~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~-~ 136 (434)
T KOG1009|consen 58 LSSLSRHTRAVNVVRFSPDGELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDS-N 136 (434)
T ss_pred eecccCCcceeEEEEEcCCcCeeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCC-c
Confidence 356789999999999999999999999999999997651 0 11233445678999999999999985 6
Q ss_pred EEEEEeCCCeEEEEECCCCeeeeeeeec-CCeeEEEECCCCCeEEEEcCCCcEEEEEcCCCeeeeeee------------
Q 026765 81 LIATASGDKTVRLWDARSGKCSQQAELS-GENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRK------------ 147 (233)
Q Consensus 81 ~l~sg~~d~~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~------------ 147 (233)
++++|+-|..+++||+..|+.......+ .-+..++|.|-..++++-+.|...+.+.+...+.+....
T Consensus 137 ~l~s~s~dns~~l~Dv~~G~l~~~~~dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~ 216 (434)
T KOG1009|consen 137 FLVSGSVDNSVRLWDVHAGQLLAILDDHEHYVQGVAWDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNER 216 (434)
T ss_pred eeeeeeccceEEEEEeccceeEeeccccccccceeecchhhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCC
Confidence 7889999999999999999876654433 344568888888887776666644444322111110000
Q ss_pred --------cC----ceeeEEEECCCCCEE---------------------------------------------------
Q 026765 148 --------FG----YEVNEIAWNMTGEMF--------------------------------------------------- 164 (233)
Q Consensus 148 --------~~----~~~~~~~~~~~~~~~--------------------------------------------------- 164 (233)
+. .--..++|+|+|.++
T Consensus 217 e~~s~rLfhDeTlksFFrRlsfTPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~k~~lavr~~pVy~e 296 (434)
T KOG1009|consen 217 EGKSTRLFHDETLKSFFRRLSFTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAARLPSPKKPALAVRFSPVYYE 296 (434)
T ss_pred CcceeeeeecCchhhhhhhcccCCCCcEEEcccceeeeCCceeeceeEeeccccccCceeecCCCCcceEEEEeeeeEEE
Confidence 00 000112233333322
Q ss_pred ------------------EEEeCCCeEEEEecCCceeeeEEe-eecCceeEEEECCCCCEEEEeeCCCcEEEEecCCc
Q 026765 165 ------------------FLTTGNGTVEVLTYPSLRPLDTVV-AHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEM 223 (233)
Q Consensus 165 ------------------~~~~~~~~v~~~~~~~~~~~~~~~-~~~~~v~~i~~~p~~~~las~s~dg~v~iwd~~~~ 223 (233)
++....+.+.+||.++.+++.... .|-..++.++|+++|..|+..|.||..-+--++..
T Consensus 297 lrp~~~~~~~~~lpyrlvfaiAt~~svyvydtq~~~P~~~v~nihy~~iTDiaws~dg~~l~vSS~DGyCS~vtfe~~ 374 (434)
T KOG1009|consen 297 LRPLSSEKFLFVLPYRLVFAIATKNSVYVYDTQTLEPLAVVDNIHYSAITDIAWSDDGSVLLVSSTDGFCSLVTFEPW 374 (434)
T ss_pred eccccccccccccccceEEEEeecceEEEeccccccceEEEeeeeeeeecceeecCCCcEEEEeccCCceEEEEEcch
Confidence 222234467777777666665543 47788999999999999999999998766555433
No 161
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.79 E-value=4.8e-18 Score=134.74 Aligned_cols=214 Identities=21% Similarity=0.287 Sum_probs=149.0
Q ss_pred ceeeeCccccEEEEEECcCCCEEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCC-CCEEEEEeCCCeE
Q 026765 13 SREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKH-ADLIATASGDKTV 91 (233)
Q Consensus 13 ~~~~~~H~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~-~~~l~sg~~d~~i 91 (233)
-+++.||++-|+|+.|+.+|.+|+|||.|-.+.|||+... +.....-.||...|.++.|-|.. ..+++||+.|+.|
T Consensus 43 E~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~---KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i 119 (758)
T KOG1310|consen 43 EAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEY---KLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLI 119 (758)
T ss_pred hhhhccccceecceeecCCCCEEeecCCcceEEeecchhc---ceeeeeecccccceeEEeeeccCCCeEEEeccCcceE
Confidence 3678999999999999999999999999999999998632 22222346899999999998853 4577999999999
Q ss_pred EEEECCCCee----------eeeee-ecCCeeEEEECCCC-CeEEEEcCCCcEEEEEcCCCeeeee-e-----e-----c
Q 026765 92 RLWDARSGKC----------SQQAE-LSGENINITYKPDG-THIAVGNRDDELTILDVRKFKPIHR-R-----K-----F 148 (233)
Q Consensus 92 ~iwd~~~~~~----------~~~~~-~~~~~~~~~~~~~~-~~l~~~~~d~~i~i~d~~~~~~~~~-~-----~-----~ 148 (233)
+++|+...+. ...+. ....+..++..|++ +.+.++++||+++.+|++....-.. . . .
T Consensus 120 ~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~ 199 (758)
T KOG1310|consen 120 KLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQ 199 (758)
T ss_pred EEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchh
Confidence 9999974221 01111 11223457778887 7889999999999999975321100 0 0 0
Q ss_pred CceeeEEEECCCC-CEEEEEeCCCeEEEEecCCc------------------eeeeEEe-eec--------C---ceeEE
Q 026765 149 GYEVNEIAWNMTG-EMFFLTTGNGTVEVLTYPSL------------------RPLDTVV-AHT--------A---GCYCI 197 (233)
Q Consensus 149 ~~~~~~~~~~~~~-~~~~~~~~~~~v~~~~~~~~------------------~~~~~~~-~~~--------~---~v~~i 197 (233)
-.+..++..+|.. .++++|+.+-..++||.+.. +++..+. +|- . .++-+
T Consensus 200 lielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn~~gn~~~~~~~~t~v 279 (758)
T KOG1310|consen 200 LIELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKNSQGNLDRYITCCTYV 279 (758)
T ss_pred hheeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccCcccccccceeeeEEE
Confidence 1245677778765 56788889999999993210 0122222 121 1 13457
Q ss_pred EECCCCCEEEEeeCCCcEEEEecCCcEEEEee
Q 026765 198 AIDPMGRYFAVGSADSLVSLWDISEMLCVRTF 229 (233)
Q Consensus 198 ~~~p~~~~las~s~dg~v~iwd~~~~~~i~~~ 229 (233)
.|+|+|.-|...=..-.|+++|+..++....|
T Consensus 280 tfnpNGtElLvs~~gEhVYlfdvn~~~~~~~y 311 (758)
T KOG1310|consen 280 TFNPNGTELLVSWGGEHVYLFDVNEDKSPTPY 311 (758)
T ss_pred EECCCCcEEEEeeCCeEEEEEeecCCCCceee
Confidence 89999987666555667999999988765443
No 162
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.79 E-value=1.5e-17 Score=135.64 Aligned_cols=215 Identities=18% Similarity=0.249 Sum_probs=157.6
Q ss_pred eCccccEEEEEECcC-----------CCEEEEEeCCCCEEEEecccCCCCceee--------------------------
Q 026765 17 TGHKKKVHSVAWNCT-----------GTKLASGSVDQTARVWHIEPHGHGKVKD-------------------------- 59 (233)
Q Consensus 17 ~~H~~~V~~~~~~~~-----------~~~l~s~~~D~~v~vW~~~~~~~~~~~~-------------------------- 59 (233)
--|..-|+.+.--|- -..+.|++.|++||+|+++.-....+..
T Consensus 366 lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~ 445 (1080)
T KOG1408|consen 366 LYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASA 445 (1080)
T ss_pred eeccceeeeeccccccccCcccccCCccceeEecCCCcEEEeecccccccceeecccchhhhhcCccccCchhhhhhccC
Confidence 357777877765441 2358999999999999986411111100
Q ss_pred -------EEEecCcCcEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeeee-ecCCeeEEEECC---CCCeEEEEcC
Q 026765 60 -------IELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAE-LSGENINITYKP---DGTHIAVGNR 128 (233)
Q Consensus 60 -------~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~---~~~~l~~~~~ 128 (233)
...-+-...+++++.+|+++ .|++|..-|.++|||+.+-+..-..+ +..++.++.|+. ..+.|++++.
T Consensus 446 ~~fdka~~s~~d~r~G~R~~~vSp~gq-hLAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasr 524 (1080)
T KOG1408|consen 446 GIFDKALVSTCDSRFGFRALAVSPDGQ-HLASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASR 524 (1080)
T ss_pred CcccccchhhcCcccceEEEEECCCcc-eecccCccCceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhccC
Confidence 01112345789999999875 67899999999999998765444333 345677887763 2467889999
Q ss_pred CCcEEEEEcCCC-e----------eeeeeec----------------------------------------CceeeEEEE
Q 026765 129 DDELTILDVRKF-K----------PIHRRKF----------------------------------------GYEVNEIAW 157 (233)
Q Consensus 129 d~~i~i~d~~~~-~----------~~~~~~~----------------------------------------~~~~~~~~~ 157 (233)
|..|++||+... . .+...++ ...+..++.
T Consensus 525 dRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm~V 604 (1080)
T KOG1408|consen 525 DRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDMAV 604 (1080)
T ss_pred CceEEEEecccccchhhhhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEeee
Confidence 999999986311 0 0000000 113567788
Q ss_pred CCCCCEEEEEeCCCeEEEEecCCceeeeEEee---ecCceeEEEECCCCCEEEEeeCCCcEEEEecCCcEEEEeeecC
Q 026765 158 NMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVA---HTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKL 232 (233)
Q Consensus 158 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~---~~~~v~~i~~~p~~~~las~s~dg~v~iwd~~~~~~i~~~~~~ 232 (233)
.|+.+++++++.|.+|+||+...++..+.|.+ |.+....+..+|.|.|||+...|.++.++|.-+++|+.++-+|
T Consensus 605 dp~~k~v~t~cQDrnirif~i~sgKq~k~FKgs~~~eG~lIKv~lDPSgiY~atScsdktl~~~Df~sgEcvA~m~GH 682 (1080)
T KOG1408|consen 605 DPTSKLVVTVCQDRNIRIFDIESGKQVKSFKGSRDHEGDLIKVILDPSGIYLATSCSDKTLCFVDFVSGECVAQMTGH 682 (1080)
T ss_pred CCCcceEEEEecccceEEEeccccceeeeecccccCCCceEEEEECCCccEEEEeecCCceEEEEeccchhhhhhcCc
Confidence 89999999999999999999999998888875 6566778899999999999999999999999999999887665
No 163
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.78 E-value=1.7e-15 Score=122.10 Aligned_cols=209 Identities=28% Similarity=0.492 Sum_probs=159.9
Q ss_pred cceeeeCccccEEEEEECcCCCEEEEEeC-CCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCCe
Q 026765 12 HSREYTGHKKKVHSVAWNCTGTKLASGSV-DQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKT 90 (233)
Q Consensus 12 ~~~~~~~H~~~V~~~~~~~~~~~l~s~~~-D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~ 90 (233)
....+.+|...|.+++|+|++..+++++. |+.+++|++.... ....+.+|...|.+++|+|++..++++++.|+.
T Consensus 147 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~ 222 (466)
T COG2319 147 LIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGK----PLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGT 222 (466)
T ss_pred EEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCc----eEEeeccCCCceEEEEEcCCcceEEEEecCCCc
Confidence 34567899999999999999999999986 9999999986411 223456799999999999876546666699999
Q ss_pred EEEEECCCCeeee-eeeecCCeeEEEECCCCCeEEEEcCCCcEEEEEcCCCee-eeee-ecCceeeEEEECCCCCEEEEE
Q 026765 91 VRLWDARSGKCSQ-QAELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKP-IHRR-KFGYEVNEIAWNMTGEMFFLT 167 (233)
Q Consensus 91 i~iwd~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~ 167 (233)
|++||...+.... ....+.......|+|++..+++++.|+.+++|+++.... .... .+...+..+.|.|++..++++
T Consensus 223 i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 302 (466)
T COG2319 223 IRLWDLSTGKLLRSTLSGHSDSVVSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASG 302 (466)
T ss_pred EEEEECCCCcEEeeecCCCCcceeEeECCCCCEEEEecCCCcEEEeeecCCCcEEEEEecCCccEEEEEECCCCCEEEEe
Confidence 9999988666555 233332222127999998888999999999999986554 2222 234678888999988888888
Q ss_pred eCCCeEEEEecCCceeeeEEe--eecCceeEEEECCCCCEEEEe-eCCCcEEEEecCCcE
Q 026765 168 TGNGTVEVLTYPSLRPLDTVV--AHTAGCYCIAIDPMGRYFAVG-SADSLVSLWDISEML 224 (233)
Q Consensus 168 ~~~~~v~~~~~~~~~~~~~~~--~~~~~v~~i~~~p~~~~las~-s~dg~v~iwd~~~~~ 224 (233)
+.++.+.+|+........... .|...+..+.+.+++..++.+ ..|+.+.+|++....
T Consensus 303 ~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 362 (466)
T COG2319 303 SSDGTVRLWDLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGK 362 (466)
T ss_pred eCCCcEEEEEcCCCceEEEeeecccCCceEEEEECCCCCEEEEeecCCCcEEeeecCCCc
Confidence 888889999887766655555 787778899994332555555 688999999998776
No 164
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.77 E-value=2.3e-17 Score=121.44 Aligned_cols=210 Identities=20% Similarity=0.337 Sum_probs=149.2
Q ss_pred ccceeeeCccccEEEEEECcCCCE-EEEEeCC-------CCEEEEecccCC-CCceeeE----EEe-cCcCcEEEEEEcC
Q 026765 11 LHSREYTGHKKKVHSVAWNCTGTK-LASGSVD-------QTARVWHIEPHG-HGKVKDI----ELR-GHADSVDQLCWDP 76 (233)
Q Consensus 11 ~~~~~~~~H~~~V~~~~~~~~~~~-l~s~~~D-------~~v~vW~~~~~~-~~~~~~~----~~~-~h~~~v~~~~~~~ 76 (233)
+..+.|..|.+.|+.++-+|.... |+|+-.| -.+.||.+...- +.....+ .+. .+...|.++.|.|
T Consensus 54 l~skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE~v~~Ldteavg~i~cvew~P 133 (370)
T KOG1007|consen 54 LLSKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLECVASLDTEAVGKINCVEWEP 133 (370)
T ss_pred hhhhhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCccccchhhHhhcCCHHHhCceeeEEEcC
Confidence 344678889999999999997654 5555432 246899875321 1111111 122 3445899999999
Q ss_pred CCCCEEEEEeCCCeEEEEECCCCeee-eeeee------cCCeeEEEECC--CCCeEEEEcCCCcEEEEEcCCCeeeeeee
Q 026765 77 KHADLIATASGDKTVRLWDARSGKCS-QQAEL------SGENINITYKP--DGTHIAVGNRDDELTILDVRKFKPIHRRK 147 (233)
Q Consensus 77 ~~~~~l~sg~~d~~i~iwd~~~~~~~-~~~~~------~~~~~~~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~ 147 (233)
++.+ +++ -.|..|.+|++..+... ..... ......-+|+| +++.+++ ..|+++..||+|+.+....+.
T Consensus 134 ns~k-las-m~dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~t-t~d~tl~~~D~RT~~~~~sI~ 210 (370)
T KOG1007|consen 134 NSDK-LAS-MDDNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVAT-TSDSTLQFWDLRTMKKNNSIE 210 (370)
T ss_pred CCCe-eEE-eccCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEE-eCCCcEEEEEccchhhhcchh
Confidence 7654 444 45889999999877542 22111 11223467887 5666654 457899999999877655443
Q ss_pred --cCceeeEEEECCCCCEEEE-EeCCCeEEEEecCC-ceeeeEEeeecCceeEEEECCCC-CEEEEeeCCCcEEEEecCC
Q 026765 148 --FGYEVNEIAWNMTGEMFFL-TTGNGTVEVLTYPS-LRPLDTVVAHTAGCYCIAIDPMG-RYFAVGSADSLVSLWDISE 222 (233)
Q Consensus 148 --~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~~~~~-~~~~~~~~~~~~~v~~i~~~p~~-~~las~s~dg~v~iwd~~~ 222 (233)
++..+..+.|+|+.+.+++ ++.||.+++||.+. ..++..+.+|...|+++.|+|.. +++.+|+.|..|.+|.+.+
T Consensus 211 dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~s 290 (370)
T KOG1007|consen 211 DAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASS 290 (370)
T ss_pred hhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCccceEEEecCCCceeEEEeccc
Confidence 5667999999999887655 56689999999974 56888899999999999999964 5788999999999999865
Q ss_pred c
Q 026765 223 M 223 (233)
Q Consensus 223 ~ 223 (233)
.
T Consensus 291 v 291 (370)
T KOG1007|consen 291 V 291 (370)
T ss_pred c
Confidence 4
No 165
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.77 E-value=3.1e-17 Score=118.19 Aligned_cols=181 Identities=16% Similarity=0.187 Sum_probs=135.4
Q ss_pred ccEEEEEECcCCCEEEEEeCCCCEEEEecccC------CCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCCeEEEE
Q 026765 21 KKVHSVAWNCTGTKLASGSVDQTARVWHIEPH------GHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLW 94 (233)
Q Consensus 21 ~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~------~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~iw 94 (233)
..|.+-+++|.+++|+.|..+|+|.+..++.- ..++.......+|..+|+.++|+. .+|++|+ ||.|+=|
T Consensus 11 ~tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~d---~~Lls~g-dG~V~gw 86 (325)
T KOG0649|consen 11 NTVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFHD---DFLLSGG-DGLVYGW 86 (325)
T ss_pred HHHHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeeeh---hheeecc-CceEEEe
Confidence 35666689999999999999999999987531 122333344579999999999983 3566765 5999988
Q ss_pred ECCCCeeeeeeeecCCeeEEEECCCCCeEEEEcCCCcEEEEEcCCCeeeeeeecCceeeEEEECCCCCEEEEEeCCCeEE
Q 026765 95 DARSGKCSQQAELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNGTVE 174 (233)
Q Consensus 95 d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 174 (233)
..+.-... .+.-.+|.+.........+ -.+++.+...|..+.++.+++|+.++
T Consensus 87 ~W~E~~es--------------------------~~~K~lwe~~~P~~~~~~e-vPeINam~ldP~enSi~~AgGD~~~y 139 (325)
T KOG0649|consen 87 EWNEEEES--------------------------LATKRLWEVKIPMQVDAVE-VPEINAMWLDPSENSILFAGGDGVIY 139 (325)
T ss_pred eehhhhhh--------------------------ccchhhhhhcCccccCccc-CCccceeEeccCCCcEEEecCCeEEE
Confidence 76542110 0112234332211111111 13688899999988888888999999
Q ss_pred EEecCCceeeeEEeeecCceeEEEECCCCCEEEEeeCCCcEEEEecCCcEEEEeeecC
Q 026765 175 VLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKL 232 (233)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~las~s~dg~v~iwd~~~~~~i~~~~~~ 232 (233)
.||+++++....+.+|+.-|.++.--.....+.+|++||++||||.+++++++.++.+
T Consensus 140 ~~dlE~G~i~r~~rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~y 197 (325)
T KOG0649|consen 140 QVDLEDGRIQREYRGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEPY 197 (325)
T ss_pred EEEecCCEEEEEEcCCcceeeeeeecccCcceeecCCCccEEEEeccccceeEEeccc
Confidence 9999999999999999999999988555667899999999999999999999988754
No 166
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.77 E-value=6.9e-18 Score=136.00 Aligned_cols=204 Identities=25% Similarity=0.402 Sum_probs=148.1
Q ss_pred cccEEEEEECcC-CCEEEEEeCCCCEEEEecccCCCC---ceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCCeEEEEE
Q 026765 20 KKKVHSVAWNCT-GTKLASGSVDQTARVWHIEPHGHG---KVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWD 95 (233)
Q Consensus 20 ~~~V~~~~~~~~-~~~l~s~~~D~~v~vW~~~~~~~~---~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~iwd 95 (233)
...|+.+.|+|. ..+||.++.||.|++|.+...+.. ......+.+|.+.|+++.|+|--..+|+++++|.+|++||
T Consensus 627 gt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWD 706 (1012)
T KOG1445|consen 627 GTLVTDLHWDPFDDERLAVATDDGQINLWRLTANGLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWD 706 (1012)
T ss_pred CceeeecccCCCChHHeeecccCceEEEEEeccCCCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeee
Confidence 457999999994 578999999999999998754432 1233467899999999999998888999999999999999
Q ss_pred CCCCeeeeeee-ecCCeeEEEECCCCCeEEEEcCCCcEEEEEcCCCe-eeeeee--cCceeeEEEECCCCCEEEEEeCC-
Q 026765 96 ARSGKCSQQAE-LSGENINITYKPDGTHIAVGNRDDELTILDVRKFK-PIHRRK--FGYEVNEIAWNMTGEMFFLTTGN- 170 (233)
Q Consensus 96 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~-~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~- 170 (233)
+++.+....+. +.+.+..++|+|+|+.+++.+.|+++++|..++.+ ++...+ .+..-..+.|.-+|+++++.+-|
T Consensus 707 l~~~~~~~~l~gHtdqIf~~AWSpdGr~~AtVcKDg~~rVy~Prs~e~pv~Eg~gpvgtRgARi~wacdgr~viv~Gfdk 786 (1012)
T KOG1445|consen 707 LANAKLYSRLVGHTDQIFGIAWSPDGRRIATVCKDGTLRVYEPRSREQPVYEGKGPVGTRGARILWACDGRIVIVVGFDK 786 (1012)
T ss_pred hhhhhhhheeccCcCceeEEEECCCCcceeeeecCceEEEeCCCCCCCccccCCCCccCcceeEEEEecCcEEEEecccc
Confidence 99876544443 44678899999999999999999999999988643 333222 12234467788899998877644
Q ss_pred ---CeEEEEecCC--ceeeeEEeeecCc-eeEEEECCCCC-EEEEeeCCCcEEEEecCCc
Q 026765 171 ---GTVEVLTYPS--LRPLDTVVAHTAG-CYCIAIDPMGR-YFAVGSADSLVSLWDISEM 223 (233)
Q Consensus 171 ---~~v~~~~~~~--~~~~~~~~~~~~~-v~~i~~~p~~~-~las~s~dg~v~iwd~~~~ 223 (233)
..+.+|+... ..++.+......+ +.-=.+++|.. .|++|-.|..|.+|.+-.-
T Consensus 787 ~SeRQv~~Y~Aq~l~~~pl~t~~lDvaps~LvP~YD~Ds~~lfltGKGD~~v~~yEv~~e 846 (1012)
T KOG1445|consen 787 SSERQVQMYDAQTLDLRPLYTQVLDVAPSPLVPHYDYDSNVLFLTGKGDRFVNMYEVIYE 846 (1012)
T ss_pred cchhhhhhhhhhhccCCcceeeeecccCccccccccCCCceEEEecCCCceEEEEEecCC
Confidence 5677777643 2333332211111 11112556554 5788889999999987543
No 167
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.77 E-value=1e-16 Score=119.63 Aligned_cols=195 Identities=15% Similarity=0.253 Sum_probs=140.6
Q ss_pred eCccccEEEEEECcCCCEEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCCeEEEEEC
Q 026765 17 TGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDA 96 (233)
Q Consensus 17 ~~H~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~iwd~ 96 (233)
.-|.-.|-.+-....+++++|++.|.+|.+|++..+..+ .+......-+..+.+|+| +++++++.--.|++|.+
T Consensus 184 ~kh~v~~i~iGiA~~~k~imsas~dt~i~lw~lkGq~L~-----~idtnq~~n~~aavSP~G-RFia~~gFTpDVkVwE~ 257 (420)
T KOG2096|consen 184 RKHQVDIINIGIAGNAKYIMSASLDTKICLWDLKGQLLQ-----SIDTNQSSNYDAAVSPDG-RFIAVSGFTPDVKVWEP 257 (420)
T ss_pred hhcccceEEEeecCCceEEEEecCCCcEEEEecCCceee-----eeccccccccceeeCCCC-cEEEEecCCCCceEEEE
Confidence 357777777777778899999999999999998632111 112222334556789985 68889999999999986
Q ss_pred C---CCe---eeeeeeec---CCeeEEEECCCCCeEEEEcCCCcEEEEEcCCC-------eeeee-----eecCceeeEE
Q 026765 97 R---SGK---CSQQAELS---GENINITYKPDGTHIAVGNRDDELTILDVRKF-------KPIHR-----RKFGYEVNEI 155 (233)
Q Consensus 97 ~---~~~---~~~~~~~~---~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~-------~~~~~-----~~~~~~~~~~ 155 (233)
- .|. ..+.+.+. ..+..++|+++...+++.+.||++++||..-. ..+.. ...+.....+
T Consensus 258 ~f~kdG~fqev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL 337 (420)
T KOG2096|consen 258 IFTKDGTFQEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPVRL 337 (420)
T ss_pred EeccCcchhhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeeccceEecCCCchHhhcCCcchhhcCCCceEE
Confidence 3 222 12233333 34567899999999999999999999996421 11111 0112234478
Q ss_pred EECCCCCEEEEEeCCCeEEEEecCCceeeeEEe-eecCceeEEEECCCCCEEEEeeCCCcEEEEe
Q 026765 156 AWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVV-AHTAGCYCIAIDPMGRYFAVGSADSLVSLWD 219 (233)
Q Consensus 156 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~-~~~~~v~~i~~~p~~~~las~s~dg~v~iwd 219 (233)
..+|+|+.++++.+. .++++..++++....+. .|...|.+|+|+++|+++|+++ |+.++++-
T Consensus 338 ~lsP~g~~lA~s~gs-~l~~~~se~g~~~~~~e~~h~~~Is~is~~~~g~~~atcG-dr~vrv~~ 400 (420)
T KOG2096|consen 338 ELSPSGDSLAVSFGS-DLKVFASEDGKDYPELEDIHSTTISSISYSSDGKYIATCG-DRYVRVIR 400 (420)
T ss_pred EeCCCCcEEEeecCC-ceEEEEcccCccchhHHHhhcCceeeEEecCCCcEEeeec-ceeeeeec
Confidence 899999998887665 68888888877766654 5899999999999999999987 66777765
No 168
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.77 E-value=8.6e-18 Score=132.95 Aligned_cols=183 Identities=14% Similarity=0.282 Sum_probs=137.1
Q ss_pred eeeCccccEEEEEECcCCCEEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCCeEEEE
Q 026765 15 EYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLW 94 (233)
Q Consensus 15 ~~~~H~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~iw 94 (233)
....|.++|.|-.|+|||.-|+|+|.||.||+|.-. +... ..+-....+|+|++|.|+..+++++.+ +.+.|=
T Consensus 99 sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrs----GMLR-Stl~Q~~~~v~c~~W~p~S~~vl~c~g--~h~~IK 171 (737)
T KOG1524|consen 99 SISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRS----GMLR-STVVQNEESIRCARWAPNSNSIVFCQG--GHISIK 171 (737)
T ss_pred hhhhhhhhhhhcccCCCCceeeeecCCceEEEEecc----chHH-HHHhhcCceeEEEEECCCCCceEEecC--CeEEEe
Confidence 457899999999999999999999999999999742 1111 112234578999999999888877655 455555
Q ss_pred ECCCCe-eeeeeeecCCeeEEEECCCCCeEEEEcCCCcEEEEEcCCCeeeeeeecCceeeEEEECCCCCEEEEEeCCCeE
Q 026765 95 DARSGK-CSQQAELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNGTV 173 (233)
Q Consensus 95 d~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 173 (233)
.+.... ..+.-.+.+.+.++.|++..+.+++|++|-+.++||--.........+.+++++++|+|+ +.+++++-+ +.
T Consensus 172 pL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~G~~Lf~S~~~ey~ITSva~npd-~~~~v~S~n-t~ 249 (737)
T KOG1524|consen 172 PLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQGANLFTSAAEEYAITSVAFNPE-KDYLLWSYN-TA 249 (737)
T ss_pred ecccccceeEEeccCcEEEEeecCccccceeecCCceeEEeecccCcccccCChhccceeeeeeccc-cceeeeeee-ee
Confidence 554433 333334556778999999999999999999999999655444445567789999999999 666666543 22
Q ss_pred EEEecCCceeeeEEeeecCceeEEEECCCCCEEEEeeCCCcEEE
Q 026765 174 EVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSL 217 (233)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~las~s~dg~v~i 217 (233)
++ -....+.|+.++|||||..++.|...|.+.+
T Consensus 250 R~-----------~~p~~GSifnlsWS~DGTQ~a~gt~~G~v~~ 282 (737)
T KOG1524|consen 250 RF-----------SSPRVGSIFNLSWSADGTQATCGTSTGQLIV 282 (737)
T ss_pred ee-----------cCCCccceEEEEEcCCCceeeccccCceEEE
Confidence 21 1124567899999999999999999987654
No 169
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.76 E-value=1.3e-16 Score=119.21 Aligned_cols=207 Identities=20% Similarity=0.349 Sum_probs=148.3
Q ss_pred ccccEEEEEEC-------cCCCEEEEEeCCCCEEEEecccCCCCceeeEEEe--cCcC---cEEEEEEcCCCCCEEEEEe
Q 026765 19 HKKKVHSVAWN-------CTGTKLASGSVDQTARVWHIEPHGHGKVKDIELR--GHAD---SVDQLCWDPKHADLIATAS 86 (233)
Q Consensus 19 H~~~V~~~~~~-------~~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~--~h~~---~v~~~~~~~~~~~~l~sg~ 86 (233)
....|+..+|- |+..++|+.+.|.-|++||.-+... ...++ .|.+ +..+++|+|++.+++ ++
T Consensus 103 eg~tvydy~wYs~M~s~qP~t~l~a~ssr~~PIh~wdaftG~l----raSy~~ydh~de~taAhsL~Fs~DGeqlf--aG 176 (406)
T KOG2919|consen 103 EGETVYDYCWYSRMKSDQPSTNLFAVSSRDQPIHLWDAFTGKL----RASYRAYDHQDEYTAAHSLQFSPDGEQLF--AG 176 (406)
T ss_pred cCCEEEEEEeeeccccCCCccceeeeccccCceeeeecccccc----ccchhhhhhHHhhhhheeEEecCCCCeEe--ec
Confidence 35678888885 6778899999999999999865321 11222 2333 456899999986543 57
Q ss_pred CCCeEEEEEC-CCCeeee--------eeeecCCeeEEEECCCC-CeEEEEcCCCcEEEEEcCCCeeeeee-ecCceeeEE
Q 026765 87 GDKTVRLWDA-RSGKCSQ--------QAELSGENINITYKPDG-THIAVGNRDDELTILDVRKFKPIHRR-KFGYEVNEI 155 (233)
Q Consensus 87 ~d~~i~iwd~-~~~~~~~--------~~~~~~~~~~~~~~~~~-~~l~~~~~d~~i~i~d~~~~~~~~~~-~~~~~~~~~ 155 (233)
.+..|+++|+ +.|+-.. .+...+-..+++|+|-. ..+++|+....+-||.-...++.... .++..|+.+
T Consensus 177 ykrcirvFdt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~llggh~gGvThL 256 (406)
T KOG2919|consen 177 YKRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQLLGGHGGGVTHL 256 (406)
T ss_pred ccceEEEeeccCCCCCCcchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCceeeecccCCCeeeE
Confidence 8899999999 5554211 11123334568899955 47889998888888876666665443 345679999
Q ss_pred EECCCCCEEEEEeC-CCeEEEEecCCc-eeeeEEeeecCcee---EEEECCCCCEEEEeeCCCcEEEEecCC-cEEEEee
Q 026765 156 AWNMTGEMFFLTTG-NGTVEVLTYPSL-RPLDTVVAHTAGCY---CIAIDPMGRYFAVGSADSLVSLWDISE-MLCVRTF 229 (233)
Q Consensus 156 ~~~~~~~~~~~~~~-~~~v~~~~~~~~-~~~~~~~~~~~~v~---~i~~~p~~~~las~s~dg~v~iwd~~~-~~~i~~~ 229 (233)
.|+++|+.+.+|.. +..|..||++.. .++..+..|....+ -....|++++||+|+.||.|++||++. +..+..+
T Consensus 257 ~~~edGn~lfsGaRk~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~ 336 (406)
T KOG2919|consen 257 QWCEDGNKLFSGARKDDKILCWDIRYSRDPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVT 336 (406)
T ss_pred EeccCcCeecccccCCCeEEEEeehhccchhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCCccccc
Confidence 99999999998865 789999999754 45555666655222 355679999999999999999999987 6655554
Q ss_pred ec
Q 026765 230 TK 231 (233)
Q Consensus 230 ~~ 231 (233)
..
T Consensus 337 ~~ 338 (406)
T KOG2919|consen 337 GN 338 (406)
T ss_pred cc
Confidence 43
No 170
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.76 E-value=1.3e-15 Score=120.84 Aligned_cols=200 Identities=12% Similarity=0.155 Sum_probs=134.7
Q ss_pred ccEEEEEECcCCCEEEEEeC-CCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCCeEEEEECCCC
Q 026765 21 KKVHSVAWNCTGTKLASGSV-DQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSG 99 (233)
Q Consensus 21 ~~V~~~~~~~~~~~l~s~~~-D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~iwd~~~~ 99 (233)
+....++|+|++++|++++. ++.|.+|+++..+........+. +......++++|++..++++...++.|.+||+.+.
T Consensus 80 ~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~-~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~ 158 (330)
T PRK11028 80 GSPTHISTDHQGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIE-GLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDD 158 (330)
T ss_pred CCceEEEECCCCCEEEEEEcCCCeEEEEEECCCCCCCCceeecc-CCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCC
Confidence 34678999999999988774 89999999864221110111122 23345678899987666677778899999999763
Q ss_pred eeee-------eeeecCCeeEEEECCCCCeEEEEcC-CCcEEEEEcCC--C--eeeeeeec-C------ceeeEEEECCC
Q 026765 100 KCSQ-------QAELSGENINITYKPDGTHIAVGNR-DDELTILDVRK--F--KPIHRRKF-G------YEVNEIAWNMT 160 (233)
Q Consensus 100 ~~~~-------~~~~~~~~~~~~~~~~~~~l~~~~~-d~~i~i~d~~~--~--~~~~~~~~-~------~~~~~~~~~~~ 160 (233)
.... .......+..+.|+|+++++++... ++.+.+||+.. . +.+..... . .....+.++|+
T Consensus 159 g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pd 238 (330)
T PRK11028 159 GHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPD 238 (330)
T ss_pred CcccccCCCceecCCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCC
Confidence 2211 1112334456899999999988776 89999999863 1 22222211 0 11235789999
Q ss_pred CCEEEEEeC-CCeEEEEecCCceeeeEEeee---cCceeEEEECCCCCEEEEeeC-CCcEEEEecC
Q 026765 161 GEMFFLTTG-NGTVEVLTYPSLRPLDTVVAH---TAGCYCIAIDPMGRYFAVGSA-DSLVSLWDIS 221 (233)
Q Consensus 161 ~~~~~~~~~-~~~v~~~~~~~~~~~~~~~~~---~~~v~~i~~~p~~~~las~s~-dg~v~iwd~~ 221 (233)
+++++++.. ++.+.+|+........++.++ ......++++|+|++|+++.. +++|.||+++
T Consensus 239 g~~lyv~~~~~~~I~v~~i~~~~~~~~~~~~~~~~~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~ 304 (330)
T PRK11028 239 GRHLYACDRTASLISVFSVSEDGSVLSFEGHQPTETQPRGFNIDHSGKYLIAAGQKSHHISVYEID 304 (330)
T ss_pred CCEEEEecCCCCeEEEEEEeCCCCeEEEeEEEeccccCCceEECCCCCEEEEEEccCCcEEEEEEc
Confidence 999988864 789999998543222222222 224568999999999987775 8999999885
No 171
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.76 E-value=1.7e-17 Score=120.64 Aligned_cols=140 Identities=21% Similarity=0.333 Sum_probs=111.1
Q ss_pred EEEEEeCCCeEEEEECCCCeeeee-----------eeecCCeeEEEECCCCCeEEEEcCCCcEEEEEcCCC--eee--ee
Q 026765 81 LIATASGDKTVRLWDARSGKCSQQ-----------AELSGENINITYKPDGTHIAVGNRDDELTILDVRKF--KPI--HR 145 (233)
Q Consensus 81 ~l~sg~~d~~i~iwd~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~--~~~--~~ 145 (233)
++++|-.+|.+.+||+.++..... .....++.++.+.+....=++|+.+..+..|.+... ... ..
T Consensus 167 lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gslq~~~e 246 (323)
T KOG0322|consen 167 LLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGSLQIRKE 246 (323)
T ss_pred EEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcCCcCCCccccceeeeeccccCcccccce
Confidence 457778889999999988633221 223445667788776666678888888999887532 111 11
Q ss_pred e-ecCceeeEEEECCCCCEEEEEeCCCeEEEEecCCceeeeEEeeecCceeEEEECCCCCEEEEeeCCCcEEEEec
Q 026765 146 R-KFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDI 220 (233)
Q Consensus 146 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~las~s~dg~v~iwd~ 220 (233)
. ..+..+..+..-||++.+++++-|+.+++|.+++.+++..+.-|...|++++|+|+...+|+||.|+.|-+|++
T Consensus 247 ~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyHsagvn~vAfspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 247 ITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred EEecCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhhhhhhcceeEEEeCCCCchhhhccCCceEEeeec
Confidence 1 12346788899999999999999999999999999999999999999999999999999999999999999986
No 172
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.76 E-value=5.6e-17 Score=121.76 Aligned_cols=194 Identities=16% Similarity=0.209 Sum_probs=143.6
Q ss_pred CEEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCC-CCCEEEEEeCCCeEEEEECCCCeeeeeeeec--C
Q 026765 33 TKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPK-HADLIATASGDKTVRLWDARSGKCSQQAELS--G 109 (233)
Q Consensus 33 ~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~-~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~--~ 109 (233)
+.+|++.+.|+|++||..+.. ...+++++...++.+.|... +++.+.+|+.||+|++||+|........... .
T Consensus 41 ~~vav~lSngsv~lyd~~tg~----~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~ 116 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQ----LLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQS 116 (376)
T ss_pred eeEEEEecCCeEEEEeccchh----hhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCC
Confidence 468888899999999987522 12367888888888888654 6788999999999999999987544333222 2
Q ss_pred --CeeEEEECCCCCeEEEEcC----CCcEEEEEcCCCee-eeee--ecCceeeEEEECCCC-CEEEEEeCCCeEEEEecC
Q 026765 110 --ENINITYKPDGTHIAVGNR----DDELTILDVRKFKP-IHRR--KFGYEVNEIAWNMTG-EMFFLTTGNGTVEVLTYP 179 (233)
Q Consensus 110 --~~~~~~~~~~~~~l~~~~~----d~~i~i~d~~~~~~-~~~~--~~~~~~~~~~~~~~~-~~~~~~~~~~~v~~~~~~ 179 (233)
+..+++..-.++.+++|.+ +-.+.+||.|..+. +..+ .+...|+++.|+|.. +.+++|+.||-+.++|..
T Consensus 117 ~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~ 196 (376)
T KOG1188|consen 117 GTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTK 196 (376)
T ss_pred CCcceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecC
Confidence 3344555556777887764 45789999998765 3322 245679999999975 677888999999999985
Q ss_pred Cce---eeeEEeeecCceeEEEECCCC-CEEEEeeCCCcEEEEecCCcEEEEeee
Q 026765 180 SLR---PLDTVVAHTAGCYCIAIDPMG-RYFAVGSADSLVSLWDISEMLCVRTFT 230 (233)
Q Consensus 180 ~~~---~~~~~~~~~~~v~~i~~~p~~-~~las~s~dg~v~iwd~~~~~~i~~~~ 230 (233)
... .+.....|...|.++.|..++ +.|.+-+..++..+|+++.+.+...+.
T Consensus 197 ~d~EeDaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~ 251 (376)
T KOG1188|consen 197 KDNEEDALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLE 251 (376)
T ss_pred CCcchhhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhccc
Confidence 321 223333477889999998776 468888999999999999988765543
No 173
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.76 E-value=6.6e-17 Score=125.64 Aligned_cols=209 Identities=14% Similarity=0.222 Sum_probs=169.5
Q ss_pred ccccEEEEEECcCCC-EEEEEeCCCCEEEEecccCCCCceeeEEEecCc-CcEEEEEEcCCCCCEEEEEeCCCeEEEEEC
Q 026765 19 HKKKVHSVAWNCTGT-KLASGSVDQTARVWHIEPHGHGKVKDIELRGHA-DSVDQLCWDPKHADLIATASGDKTVRLWDA 96 (233)
Q Consensus 19 H~~~V~~~~~~~~~~-~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~-~~v~~~~~~~~~~~~l~sg~~d~~i~iwd~ 96 (233)
-.-+|.++.|.|+|. .+++++.-.-...||+......++. .+.++. ..+.....+|++ .+|+.+|..|.|.+--.
T Consensus 256 ~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~~k~~--~~~g~e~~~~e~FeVShd~-~fia~~G~~G~I~lLha 332 (514)
T KOG2055|consen 256 EKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKVTKLK--PPYGVEEKSMERFEVSHDS-NFIAIAGNNGHIHLLHA 332 (514)
T ss_pred ccCccceeeecCCCceEEEecccceEEEEeecccccccccc--CCCCcccchhheeEecCCC-CeEEEcccCceEEeehh
Confidence 366899999999998 8999999999999999765433322 223443 356677788875 58889999999999999
Q ss_pred CCCeeeeeeeecCCeeEEEECCCCCeEEEEcCCCcEEEEEcCCCeeeeeeecCc--eeeEEEECCCCCEEEEEeCCCeEE
Q 026765 97 RSGKCSQQAELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGY--EVNEIAWNMTGEMFFLTTGNGTVE 174 (233)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~v~ 174 (233)
.++.....+...+.+..+.|+.+++.|++++.+|.|.+||++....++...... .-++++.++++.++++|+..|.|.
T Consensus 333 kT~eli~s~KieG~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA~GS~~GiVN 412 (514)
T KOG2055|consen 333 KTKELITSFKIEGVVSDFTFSSDSKELLASGGTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLATGSDSGIVN 412 (514)
T ss_pred hhhhhhheeeeccEEeeEEEecCCcEEEEEcCCceEEEEecCCcceEEEEeecCccceeeeeecCCCceEEeccCcceEE
Confidence 999888888888888899999999999999999999999999887776654332 345677789999999999999999
Q ss_pred EEecC------CceeeeEEeeecCceeEEEECCCCCEEEEeeC--CCcEEEEecCCcEEEEeee
Q 026765 175 VLTYP------SLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSA--DSLVSLWDISEMLCVRTFT 230 (233)
Q Consensus 175 ~~~~~------~~~~~~~~~~~~~~v~~i~~~p~~~~las~s~--dg~v~iwd~~~~~~i~~~~ 230 (233)
|||.. ..+|+..+..-...|++++|+|+.+.||.+|. +..+|+--+.+......|+
T Consensus 413 IYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP 476 (514)
T KOG2055|consen 413 IYDGNSCFASTNPKPIKTVDNLTTAITSLQFNHDAQILAIASRVKKNALRLVHVPSCTVFSNFP 476 (514)
T ss_pred EeccchhhccCCCCchhhhhhhheeeeeeeeCcchhhhhhhhhccccceEEEeccceeeeccCC
Confidence 99964 35677777777788999999999999998885 5678888887776665554
No 174
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.76 E-value=6.2e-17 Score=120.89 Aligned_cols=190 Identities=18% Similarity=0.288 Sum_probs=141.3
Q ss_pred EEEEEECcCCCEEEEEeCCCCEEEEecccCCCC-ceeeEEE---ecCcCcEEEEEEcCCCCCEEEEEeCCCeEEEEECCC
Q 026765 23 VHSVAWNCTGTKLASGSVDQTARVWHIEPHGHG-KVKDIEL---RGHADSVDQLCWDPKHADLIATASGDKTVRLWDARS 98 (233)
Q Consensus 23 V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~-~~~~~~~---~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~iwd~~~ 98 (233)
-.+++|+|||.+|+.| ..++|||+|+...+.. ....... .+..+.+.+++|+|.+...++.|+.-..+-||.-..
T Consensus 161 AhsL~Fs~DGeqlfaG-ykrcirvFdt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~ 239 (406)
T KOG2919|consen 161 AHSLQFSPDGEQLFAG-YKRCIRVFDTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDG 239 (406)
T ss_pred heeEEecCCCCeEeec-ccceEEEeeccCCCCCCcchhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCC
Confidence 3489999999999765 5799999998432211 1111111 234678899999999998999999999999998877
Q ss_pred Ceeeeeee-ecCCeeEEEECCCCCeEEEEcC-CCcEEEEEcCCCe-eeeeeec--CceeeE--EEECCCCCEEEEEeCCC
Q 026765 99 GKCSQQAE-LSGENINITYKPDGTHIAVGNR-DDELTILDVRKFK-PIHRRKF--GYEVNE--IAWNMTGEMFFLTTGNG 171 (233)
Q Consensus 99 ~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~-d~~i~i~d~~~~~-~~~~~~~--~~~~~~--~~~~~~~~~~~~~~~~~ 171 (233)
+++...+. ..+.+.-++|.++|+.+.+|.. +.+|..||+|..+ ++..+.- +..-.. ....|.++.+++|+.+|
T Consensus 240 ~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG 319 (406)
T KOG2919|consen 240 RRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRDPVYALERHVGDTNQRILFDLDPKGEILASGDTDG 319 (406)
T ss_pred CCceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhccchhhhhhhhccCccceEEEecCCCCceeeccCCCc
Confidence 76655544 3455677999999999999886 6789999998643 2221111 101112 34568899999999999
Q ss_pred eEEEEecCC-ceeeeEEeeecCceeEEEECCCCCEEEEeeCCC
Q 026765 172 TVEVLTYPS-LRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADS 213 (233)
Q Consensus 172 ~v~~~~~~~-~~~~~~~~~~~~~v~~i~~~p~~~~las~s~dg 213 (233)
.|++||++. +.....+..|...++.++++|--.++|+++...
T Consensus 320 ~V~vwdlk~~gn~~sv~~~~sd~vNgvslnP~mpilatssGqr 362 (406)
T KOG2919|consen 320 SVRVWDLKDLGNEVSVTGNYSDTVNGVSLNPIMPILATSSGQR 362 (406)
T ss_pred cEEEEecCCCCCcccccccccccccceecCcccceeeeccCce
Confidence 999999986 565666777889999999999988899887554
No 175
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.76 E-value=7.6e-17 Score=123.43 Aligned_cols=212 Identities=17% Similarity=0.218 Sum_probs=153.8
Q ss_pred CccceeeeCccccEEEEEECcCCCEEEEEeCCCCEEEEecccCCCCce-eeEEEe--cCcCcEEEEEEcCCCCCEEEEEe
Q 026765 10 NLHSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKV-KDIELR--GHADSVDQLCWDPKHADLIATAS 86 (233)
Q Consensus 10 ~~~~~~~~~H~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~~~-~~~~~~--~h~~~v~~~~~~~~~~~~l~sg~ 86 (233)
.++.+.+.+|.+-|+++.|+..+.+||||+.|..++||.++..-..++ +.+.+. .|...|.+++|+.. ...+++|+
T Consensus 46 ~~~qKD~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~-N~~~~SG~ 124 (609)
T KOG4227|consen 46 PFCQKDVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLE-NRFLYSGE 124 (609)
T ss_pred chhhhhhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccC-CeeEecCC
Confidence 344566789999999999999999999999999999999864211111 222333 46789999999875 46788999
Q ss_pred CCCeEEEEECCCCeeeeeeeec---CCeeEEEECCCCCeEEEEcCCCcEEEEEcCCCe-eeee---eecCceeeEEEECC
Q 026765 87 GDKTVRLWDARSGKCSQQAELS---GENINITYKPDGTHIAVGNRDDELTILDVRKFK-PIHR---RKFGYEVNEIAWNM 159 (233)
Q Consensus 87 ~d~~i~iwd~~~~~~~~~~~~~---~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~-~~~~---~~~~~~~~~~~~~~ 159 (233)
.+++|.+.|+.+.+....+... +.++.+..+|..+.+++.+.++.+.+||.+..+ ++.. ...+.....+-|+|
T Consensus 125 ~~~~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~t~~~~V~~~D~Rd~~~~~~~~~~AN~~~~F~t~~F~P 204 (609)
T KOG4227|consen 125 RWGTVIKHDIETKQSIYVANENNNRGDVYHMDQHPTDNTLIVVTRAKLVSFIDNRDRQNPISLVLPANSGKNFYTAEFHP 204 (609)
T ss_pred CcceeEeeecccceeeeeecccCcccceeecccCCCCceEEEEecCceEEEEeccCCCCCCceeeecCCCccceeeeecC
Confidence 9999999999998876665543 367778899999999999999999999997644 2221 12233455677887
Q ss_pred CC-CEEEEEeCCCeEEEEecCCce-eeeEE---eeec---CceeEEEECCCCCEEEEeeCCCcEEEEecCC
Q 026765 160 TG-EMFFLTTGNGTVEVLTYPSLR-PLDTV---VAHT---AGCYCIAIDPMGRYFAVGSADSLVSLWDISE 222 (233)
Q Consensus 160 ~~-~~~~~~~~~~~v~~~~~~~~~-~~~~~---~~~~---~~v~~i~~~p~~~~las~s~dg~v~iwd~~~ 222 (233)
.. .++++....+-+.+||.+... ++... .+-. ..-.++.|+|+|+.|.+--....-.+||+.+
T Consensus 205 ~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S 275 (609)
T KOG4227|consen 205 ETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFIS 275 (609)
T ss_pred CCceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeeec
Confidence 65 456677888899999986432 22111 1111 1225688999999888776666677777765
No 176
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.75 E-value=7.1e-19 Score=145.17 Aligned_cols=208 Identities=22% Similarity=0.407 Sum_probs=154.5
Q ss_pred ceeeeCccccEEEEEECcCCCEEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCCeEE
Q 026765 13 SREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVR 92 (233)
Q Consensus 13 ~~~~~~H~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~ 92 (233)
++.+.||.++|+|+.|+..|.+++||+.|..||||..++.. +....+||...|+.++.+.+ ..++++++.|..|+
T Consensus 183 ikrLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~----~lAs~rGhs~ditdlavs~~-n~~iaaaS~D~vIr 257 (1113)
T KOG0644|consen 183 IKRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETAR----CLASCRGHSGDITDLAVSSN-NTMIAAASNDKVIR 257 (1113)
T ss_pred HHHHHhhhhheeeeeeccccceEeecCccceeeeeeccchh----hhccCCCCccccchhccchh-hhhhhhcccCceEE
Confidence 35678999999999999999999999999999999976432 33467899999999998765 45779999999999
Q ss_pred EEECCCCeeeeeee-ecCCeeEEEECCCCCeEEEEcCCCcEEEEEcCCCeeeee---------------eec--------
Q 026765 93 LWDARSGKCSQQAE-LSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHR---------------RKF-------- 148 (233)
Q Consensus 93 iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~---------------~~~-------- 148 (233)
+|-+..+..+..+. ..+.+.+++|+|-. +.+.||++++||-+- .+... ...
T Consensus 258 vWrl~~~~pvsvLrghtgavtaiafsP~~----sss~dgt~~~wd~r~-~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~ 332 (1113)
T KOG0644|consen 258 VWRLPDGAPVSVLRGHTGAVTAIAFSPRA----SSSDDGTCRIWDARL-EPRIYVPRPLKFTEKDLVDSILFENNGDRFL 332 (1113)
T ss_pred EEecCCCchHHHHhccccceeeeccCccc----cCCCCCceEeccccc-cccccCCCCCCcccccceeeeeccccccccc
Confidence 99999987665544 45678889999864 678899999999761 11000 000
Q ss_pred ---------CceeeEEEECCCCCEE-----------EEEeCCCeEEEEecCCceeeeEEeeecCceeEEEECCCCCEE-E
Q 026765 149 ---------GYEVNEIAWNMTGEMF-----------FLTTGNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYF-A 207 (233)
Q Consensus 149 ---------~~~~~~~~~~~~~~~~-----------~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~l-a 207 (233)
.++...++|....-.+ +++-.+..+.+|++.++.....+.+|...++.+.++|-+..+ .
T Consensus 333 Tgs~d~ea~n~e~~~l~~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l~H~l~ghsd~~yvLd~Hpfn~ri~m 412 (1113)
T KOG0644|consen 333 TGSRDGEARNHEFEQLAWRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQLLHNLMGHSDEVYVLDVHPFNPRIAM 412 (1113)
T ss_pred cccCCcccccchhhHhhhhccceEEEeccccccccceeeeeeeEeeeeecccchhhhhhcccccceeeeeecCCCcHhhh
Confidence 0111122222222122 222334556677777777777788899999999999987665 5
Q ss_pred EeeCCCcEEEEecCCcEEEEeee
Q 026765 208 VGSADSLVSLWDISEMLCVRTFT 230 (233)
Q Consensus 208 s~s~dg~v~iwd~~~~~~i~~~~ 230 (233)
+++.||...|||+..+.+++.|.
T Consensus 413 sag~dgst~iwdi~eg~pik~y~ 435 (1113)
T KOG0644|consen 413 SAGYDGSTIIWDIWEGIPIKHYF 435 (1113)
T ss_pred hccCCCceEeeecccCCcceeee
Confidence 89999999999999999988764
No 177
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.75 E-value=4.1e-17 Score=124.63 Aligned_cols=163 Identities=18% Similarity=0.277 Sum_probs=131.7
Q ss_pred EecCcCcEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeee-------eeeecC-CeeEEEECCCC-CeEEEEcCCCcE
Q 026765 62 LRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQ-------QAELSG-ENINITYKPDG-THIAVGNRDDEL 132 (233)
Q Consensus 62 ~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~-------~~~~~~-~~~~~~~~~~~-~~l~~~~~d~~i 132 (233)
..||+.+|..++|.|.+...|+|||.|.+|.||.+..+.... .+..+. .+.-++|+|.. +.|++++.|..+
T Consensus 77 v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn~v 156 (472)
T KOG0303|consen 77 VCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDNTV 156 (472)
T ss_pred ccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCceE
Confidence 569999999999999999999999999999999997664322 222222 23448899964 567899999999
Q ss_pred EEEEcCCCeeeeeeecCceeeEEEECCCCCEEEEEeCCCeEEEEecCCceeeeEEeeecCc-eeEEEECCCCCEEEEee-
Q 026765 133 TILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAHTAG-CYCIAIDPMGRYFAVGS- 210 (233)
Q Consensus 133 ~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~-v~~i~~~p~~~~las~s- 210 (233)
.+|++.+++.+..+.+...+.++.|+.+|.++++.+.|..+++||.++++.+..-.+|.+. ..-+-|-.++..+.||-
T Consensus 157 ~iWnv~tgeali~l~hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~v~e~~~heG~k~~Raifl~~g~i~tTGfs 236 (472)
T KOG0303|consen 157 SIWNVGTGEALITLDHPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTVVSEGVAHEGAKPARAIFLASGKIFTTGFS 236 (472)
T ss_pred EEEeccCCceeeecCCCCeEEEEEeccCCceeeeecccceeEEEcCCCCcEeeecccccCCCcceeEEeccCceeeeccc
Confidence 9999999988877778888999999999999999999999999999999888777777653 23345666777555554
Q ss_pred --CCCcEEEEecCCcE
Q 026765 211 --ADSLVSLWDISEML 224 (233)
Q Consensus 211 --~dg~v~iwd~~~~~ 224 (233)
.++.+-+||....+
T Consensus 237 r~seRq~aLwdp~nl~ 252 (472)
T KOG0303|consen 237 RMSERQIALWDPNNLE 252 (472)
T ss_pred cccccceeccCccccc
Confidence 57889999987654
No 178
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.75 E-value=2.1e-15 Score=114.47 Aligned_cols=201 Identities=16% Similarity=0.256 Sum_probs=150.0
Q ss_pred ccccEEEEEECcCCCEEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCC--CeEEEEEC
Q 026765 19 HKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGD--KTVRLWDA 96 (233)
Q Consensus 19 H~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d--~~i~iwd~ 96 (233)
-...++...|+.+...|..|+.||. +++..++... . .........|..+-|+. .+++-.+.+ +.+++.+.
T Consensus 4 ~~~ti~~~~~Nqd~~~lsvGs~~Gy-k~~~~~~~~k--~--~~~~~~~~~IvEmLFSS---SLvaiV~~~qpr~Lkv~~~ 75 (391)
T KOG2110|consen 4 KKPTINFIGFNQDSTLLSVGSKDGY-KIFSCSPFEK--C--FSKDTEGVSIVEMLFSS---SLVAIVSIKQPRKLKVVHF 75 (391)
T ss_pred CCcceeeeeeccceeEEEccCCCce-eEEecCchHH--h--hcccCCCeEEEEeeccc---ceeEEEecCCCceEEEEEc
Confidence 3556778889999999999999886 7777654321 1 01111223455566653 355444444 35899999
Q ss_pred CCCeeeeeeeecCCeeEEEECCCCCeEEEEcCCCcEEEEEcCCCeeeeeeecC--c--eeeEEEECCCCCEEEEEe--CC
Q 026765 97 RSGKCSQQAELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFG--Y--EVNEIAWNMTGEMFFLTT--GN 170 (233)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~--~--~~~~~~~~~~~~~~~~~~--~~ 170 (233)
+.+..+-...+..++.++.+.. ++|+++-++. |.|||++..+.++.+... . .+..++.+..+.+++.-+ ..
T Consensus 76 Kk~~~ICe~~fpt~IL~VrmNr--~RLvV~Lee~-IyIydI~~MklLhTI~t~~~n~~gl~AlS~n~~n~ylAyp~s~t~ 152 (391)
T KOG2110|consen 76 KKKTTICEIFFPTSILAVRMNR--KRLVVCLEES-IYIYDIKDMKLLHTIETTPPNPKGLCALSPNNANCYLAYPGSTTS 152 (391)
T ss_pred ccCceEEEEecCCceEEEEEcc--ceEEEEEccc-EEEEecccceeehhhhccCCCccceEeeccCCCCceEEecCCCCC
Confidence 8887777777778888887754 4677776665 999999999988876543 2 244445555556887754 46
Q ss_pred CeEEEEecCCceeeeEEeeecCceeEEEECCCCCEEEEeeCCCc-EEEEecCCcEEEEeee
Q 026765 171 GTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSL-VSLWDISEMLCVRTFT 230 (233)
Q Consensus 171 ~~v~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~las~s~dg~-v~iwd~~~~~~i~~~~ 230 (233)
|.|.+||..+.++...+..|.+.+-+++|+|+|.+|||||+.|+ ||||.+.+|+.+++|.
T Consensus 153 GdV~l~d~~nl~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~kl~eFR 213 (391)
T KOG2110|consen 153 GDVVLFDTINLQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQKLYEFR 213 (391)
T ss_pred ceEEEEEcccceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccEeeeee
Confidence 99999999999999999999999999999999999999999987 7999999999999885
No 179
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.74 E-value=5.5e-15 Score=117.20 Aligned_cols=202 Identities=15% Similarity=0.132 Sum_probs=134.4
Q ss_pred ccccEEEEEECcCCCEEEEEe-CCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCCeEEEEECC
Q 026765 19 HKKKVHSVAWNCTGTKLASGS-VDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDAR 97 (233)
Q Consensus 19 H~~~V~~~~~~~~~~~l~s~~-~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~iwd~~ 97 (233)
+.+....++++|++++|+.++ .++.|.+|+++.. +......-.........++++|++..++++.-.++.|.+|++.
T Consensus 33 ~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~--g~l~~~~~~~~~~~p~~i~~~~~g~~l~v~~~~~~~v~v~~~~ 110 (330)
T PRK11028 33 VPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADD--GALTFAAESPLPGSPTHISTDHQGRFLFSASYNANCVSVSPLD 110 (330)
T ss_pred cCCCCccEEECCCCCEEEEEECCCCcEEEEEECCC--CceEEeeeecCCCCceEEEECCCCCEEEEEEcCCCeEEEEEEC
Confidence 445677899999999986664 5899999998631 2222111111233456799999876555554558999999996
Q ss_pred CCe-e---eeeeeecCCeeEEEECCCCCeEEEEc-CCCcEEEEEcCCCeeee-------eeecCceeeEEEECCCCCEEE
Q 026765 98 SGK-C---SQQAELSGENINITYKPDGTHIAVGN-RDDELTILDVRKFKPIH-------RRKFGYEVNEIAWNMTGEMFF 165 (233)
Q Consensus 98 ~~~-~---~~~~~~~~~~~~~~~~~~~~~l~~~~-~d~~i~i~d~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~ 165 (233)
+.. . ............++++|++++++++. .++.|.+||+.+...+. ....+.....+.|+|++++++
T Consensus 111 ~~g~~~~~~~~~~~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~~pdg~~ly 190 (330)
T PRK11028 111 KDGIPVAPIQIIEGLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVFHPNQQYAY 190 (330)
T ss_pred CCCCCCCceeeccCCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCCceecCCCCCCceEEECCCCCEEE
Confidence 432 1 12111122345678999999886544 56899999997633221 112244567899999999998
Q ss_pred EEeC-CCeEEEEecCC----ceeeeEEeeec------CceeEEEECCCCCEEEEeeC-CCcEEEEecCC
Q 026765 166 LTTG-NGTVEVLTYPS----LRPLDTVVAHT------AGCYCIAIDPMGRYFAVGSA-DSLVSLWDISE 222 (233)
Q Consensus 166 ~~~~-~~~v~~~~~~~----~~~~~~~~~~~------~~v~~i~~~p~~~~las~s~-dg~v~iwd~~~ 222 (233)
+... ++.+.+|+++. .+.+..+..+. .....+.++|++++|+++.. ++.|.+|++++
T Consensus 191 v~~~~~~~v~v~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~ 259 (330)
T PRK11028 191 CVNELNSSVDVWQLKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSE 259 (330)
T ss_pred EEecCCCEEEEEEEeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeC
Confidence 8876 89999999863 23333333221 12336889999999888754 78999999854
No 180
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.74 E-value=4.2e-16 Score=114.89 Aligned_cols=202 Identities=21% Similarity=0.364 Sum_probs=144.6
Q ss_pred CccccEEEEEECcCCCEEEEEeCCCCEEEEecccCCCCceeeEE---EecCcCcEEEEEEcC-CCCCEEEEEeCCCeEEE
Q 026765 18 GHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIE---LRGHADSVDQLCWDP-KHADLIATASGDKTVRL 93 (233)
Q Consensus 18 ~H~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~---~~~h~~~v~~~~~~~-~~~~~l~sg~~d~~i~i 93 (233)
.|-+.|.|+.|.|++..+++-. |..|.+|+++.... ....+. -.+|....++-+|+| .+++.+ ....|++++.
T Consensus 121 eavg~i~cvew~Pns~klasm~-dn~i~l~~l~ess~-~vaev~ss~s~e~~~~ftsg~WspHHdgnqv-~tt~d~tl~~ 197 (370)
T KOG1007|consen 121 EAVGKINCVEWEPNSDKLASMD-DNNIVLWSLDESSK-IVAEVLSSESAEMRHSFTSGAWSPHHDGNQV-ATTSDSTLQF 197 (370)
T ss_pred HHhCceeeEEEcCCCCeeEEec-cCceEEEEcccCcc-hheeecccccccccceecccccCCCCccceE-EEeCCCcEEE
Confidence 5667999999999999998876 99999999875321 112111 123566788889998 344555 4467899999
Q ss_pred EECCCCeeeeeee--ecCCeeEEEECCCCCe-EEEEcCCCcEEEEEcCCCe-eeeeee-cCceeeEEEECCCCCE-EEEE
Q 026765 94 WDARSGKCSQQAE--LSGENINITYKPDGTH-IAVGNRDDELTILDVRKFK-PIHRRK-FGYEVNEIAWNMTGEM-FFLT 167 (233)
Q Consensus 94 wd~~~~~~~~~~~--~~~~~~~~~~~~~~~~-l~~~~~d~~i~i~d~~~~~-~~~~~~-~~~~~~~~~~~~~~~~-~~~~ 167 (233)
||+++..+...+. ....+..+.|.|+..+ |++|+.|+.+++||.|+.+ ++.... +.+=+.++.|+|.... ++++
T Consensus 198 ~D~RT~~~~~sI~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRfn~~hdqLiLs~ 277 (370)
T KOG1007|consen 198 WDLRTMKKNNSIEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRFNPEHDQLILSG 277 (370)
T ss_pred EEccchhhhcchhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEecCccceEEEec
Confidence 9999766544332 2234677999998764 6788999999999998754 333322 3455889999998765 5566
Q ss_pred eCCCeEEEEecCCc------------------------e-----eeeEEeeecCceeEEEECCCCCE-EEEeeCCCcEEE
Q 026765 168 TGNGTVEVLTYPSL------------------------R-----PLDTVVAHTAGCYCIAIDPMGRY-FAVGSADSLVSL 217 (233)
Q Consensus 168 ~~~~~v~~~~~~~~------------------------~-----~~~~~~~~~~~v~~i~~~p~~~~-las~s~dg~v~i 217 (233)
+.|..|.++..... + .+.++..|...|++++||.-..+ +|+-|.||.+.|
T Consensus 278 ~SDs~V~Lsca~svSSE~qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWiFASLSYDGRviI 357 (370)
T KOG1007|consen 278 GSDSAVNLSCASSVSSEQQIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWIFASLSYDGRVII 357 (370)
T ss_pred CCCceeEEEeccccccccccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCCeeEEEeccCceEEe
Confidence 77888887753210 0 12356678999999999987776 689999999998
Q ss_pred EecCC
Q 026765 218 WDISE 222 (233)
Q Consensus 218 wd~~~ 222 (233)
=++..
T Consensus 358 s~V~r 362 (370)
T KOG1007|consen 358 SSVPR 362 (370)
T ss_pred ecCCh
Confidence 77654
No 181
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.74 E-value=6.3e-16 Score=115.33 Aligned_cols=207 Identities=16% Similarity=0.256 Sum_probs=161.0
Q ss_pred eeeCccccEEEEEECcCCCEEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCCeEEEE
Q 026765 15 EYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLW 94 (233)
Q Consensus 15 ~~~~H~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~iw 94 (233)
.|.--.++|+|-+|++|...+|.+.....|.||...... .....-+++.|...|+.++|+|.. +.|++++.|..-.+|
T Consensus 5 ~~~~~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~-~w~~~htls~Hd~~vtgvdWap~s-nrIvtcs~drnayVw 82 (361)
T KOG1523|consen 5 VFHRLLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGAD-LWEPAHTLSEHDKIVTGVDWAPKS-NRIVTCSHDRNAYVW 82 (361)
T ss_pred EeeeccCceeeeeecCCCceEEeccCCceEEEEEecCCC-CceeceehhhhCcceeEEeecCCC-CceeEccCCCCcccc
Confidence 343447899999999999999999999999999876432 122334678899999999999985 457899999999999
Q ss_pred EC-CCCeeeee---eeecCCeeEEEECCCCCeEEEEcCCCcEEEEEcCCCeee-----eeeecCceeeEEEECCCCCEEE
Q 026765 95 DA-RSGKCSQQ---AELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPI-----HRRKFGYEVNEIAWNMTGEMFF 165 (233)
Q Consensus 95 d~-~~~~~~~~---~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~ 165 (233)
.. ..++...+ +.+.....++.|+|..+.+++|+.-..|.++-.+..+.- ........+++++|+|++-+++
T Consensus 83 ~~~~~~~WkptlvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLla 162 (361)
T KOG1523|consen 83 TQPSGGTWKPTLVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLA 162 (361)
T ss_pred ccCCCCeeccceeEEEeccceeeEeecCcCceEEeccCccEEEEEEEecccceehhhhhCCccccceeeeeccCCcceec
Confidence 98 44443333 334556778999999999999999999988877654322 2223456789999999999999
Q ss_pred EEeCCCeEEEEecC-----C-------------ceeeeEEeeecCceeEEEECCCCCEEEEeeCCCcEEEEecCCc
Q 026765 166 LTTGNGTVEVLTYP-----S-------------LRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEM 223 (233)
Q Consensus 166 ~~~~~~~v~~~~~~-----~-------------~~~~~~~~~~~~~v~~i~~~p~~~~las~s~dg~v~iwd~~~~ 223 (233)
+|+.|+..+++..- . ++.+..+....+.|..+.|+|+|..||=.+.|..+.+=|....
T Consensus 163 aGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p 238 (361)
T KOG1523|consen 163 AGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGP 238 (361)
T ss_pred ccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEeCCCCCEeeEecCCCceEEeecCCC
Confidence 99999999998631 0 1223333345678999999999999999999999999887644
No 182
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.73 E-value=7.1e-15 Score=120.21 Aligned_cols=209 Identities=14% Similarity=0.160 Sum_probs=134.2
Q ss_pred eeeeCccccEEEEEECcCCCEEEEEeC---CCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCC-
Q 026765 14 REYTGHKKKVHSVAWNCTGTKLASGSV---DQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDK- 89 (233)
Q Consensus 14 ~~~~~H~~~V~~~~~~~~~~~l~s~~~---D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~- 89 (233)
+.+..+...+.+.+|+|||+.|+..+. +..+.+|++.... .. .+......+....|+|++..++++.+.++
T Consensus 192 ~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~---~~--~l~~~~~~~~~~~~SPDG~~La~~~~~~g~ 266 (429)
T PRK03629 192 FVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGA---VR--QVASFPRHNGAPAFSPDGSKLAFALSKTGS 266 (429)
T ss_pred EEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCC---eE--EccCCCCCcCCeEECCCCCEEEEEEcCCCC
Confidence 445566778999999999999986543 3468888875421 11 12222333456899999876666655555
Q ss_pred -eEEEEECCCCeeeeeeeecCCeeEEEECCCCCeEEEEcCC-CcEEE--EEcCCCeeeeeeecCceeeEEEECCCCCEEE
Q 026765 90 -TVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRD-DELTI--LDVRKFKPIHRRKFGYEVNEIAWNMTGEMFF 165 (233)
Q Consensus 90 -~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d-~~i~i--~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (233)
.|.+||+.+++..+............|+|||+.|+..+.+ +...+ +|+.+.+...............|+|+|+.++
T Consensus 267 ~~I~~~d~~tg~~~~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~~~lt~~~~~~~~~~~SpDG~~Ia 346 (429)
T PRK03629 267 LNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAPQRITWEGSQNQDADVSSDGKFMV 346 (429)
T ss_pred cEEEEEECCCCCEEEccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCeEEeecCCCCccCEEECCCCCEEE
Confidence 5888999887654433333345678999999988766653 44444 4665543322222233345688999999988
Q ss_pred EEeCC---CeEEEEecCCceeeeEEeeecCceeEEEECCCCCEEEEeeCCCc---EEEEecCCcEEEEeee
Q 026765 166 LTTGN---GTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSL---VSLWDISEMLCVRTFT 230 (233)
Q Consensus 166 ~~~~~---~~v~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~las~s~dg~---v~iwd~~~~~~i~~~~ 230 (233)
....+ ..+.+|+..+++. ..+.. .......+|+|||++|+.++.++. +.+++++ +...+.+.
T Consensus 347 ~~~~~~g~~~I~~~dl~~g~~-~~Lt~-~~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~-G~~~~~l~ 414 (429)
T PRK03629 347 MVSSNGGQQHIAKQDLATGGV-QVLTD-TFLDETPSIAPNGTMVIYSSSQGMGSVLNLVSTD-GRFKARLP 414 (429)
T ss_pred EEEccCCCceEEEEECCCCCe-EEeCC-CCCCCCceECCCCCEEEEEEcCCCceEEEEEECC-CCCeEECc
Confidence 76543 3577788766543 23332 122346789999999999888764 6777774 44444443
No 183
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.73 E-value=9.4e-17 Score=128.49 Aligned_cols=196 Identities=18% Similarity=0.309 Sum_probs=151.2
Q ss_pred eCccccEEEEEECcCCCEEEEEeC---CCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCCeEEE
Q 026765 17 TGHKKKVHSVAWNCTGTKLASGSV---DQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRL 93 (233)
Q Consensus 17 ~~H~~~V~~~~~~~~~~~l~s~~~---D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~i 93 (233)
-.|...|+.+.|+..|.+|+|... ...|.|.++..+... .-++...+.|.++.|+|....+++ + ....|+|
T Consensus 518 I~~~k~i~~vtWHrkGDYlatV~~~~~~~~VliHQLSK~~sQ----~PF~kskG~vq~v~FHPs~p~lfV-a-Tq~~vRi 591 (733)
T KOG0650|consen 518 IKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLIHQLSKRKSQ----SPFRKSKGLVQRVKFHPSKPYLFV-A-TQRSVRI 591 (733)
T ss_pred EecCCccceeeeecCCceEEEeccCCCcceEEEEeccccccc----CchhhcCCceeEEEecCCCceEEE-E-eccceEE
Confidence 358999999999999999999865 457888888653321 234445577899999998765554 3 3468999
Q ss_pred EECCCCeeeeeeeec-CCeeEEEECCCCCeEEEEcCCCcEEEEEcCCC-eeeeeee-cCceeeEEEECCCCCEEEEEeCC
Q 026765 94 WDARSGKCSQQAELS-GENINITYKPDGTHIAVGNRDDELTILDVRKF-KPIHRRK-FGYEVNEIAWNMTGEMFFLTTGN 170 (233)
Q Consensus 94 wd~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 170 (233)
||+..+..+..+... ..+-.++.+|.|..|++|+.|+++.++|+... ++..... +...+..+++|+.-.++++++.|
T Consensus 592 YdL~kqelvKkL~tg~kwiS~msihp~GDnli~gs~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~ryPLfas~sdD 671 (733)
T KOG0650|consen 592 YDLSKQELVKKLLTGSKWISSMSIHPNGDNLILGSYDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRYPLFASGSDD 671 (733)
T ss_pred EehhHHHHHHHHhcCCeeeeeeeecCCCCeEEEecCCCeeEEEEcccCcchhHHhhhhhhhhhhhhhccccceeeeecCC
Confidence 999876554443332 23445899999999999999999999998653 3333322 44568999999999999999999
Q ss_pred CeEEEEecC---------CceeeeEEeeecCc----eeEEEECCCCCEEEEeeCCCcEEEE
Q 026765 171 GTVEVLTYP---------SLRPLDTVVAHTAG----CYCIAIDPMGRYFAVGSADSLVSLW 218 (233)
Q Consensus 171 ~~v~~~~~~---------~~~~~~~~~~~~~~----v~~i~~~p~~~~las~s~dg~v~iw 218 (233)
|++.++... .--+++.+.+|... |..+.|+|...+|.+++.||+|++|
T Consensus 672 gtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~~~~~~gVLd~~wHP~qpWLfsAGAd~tirlf 732 (733)
T KOG0650|consen 672 GTVIVFHGMVYNDLLQNPLIVPLKRLRGHEKTNDLGVLDTIWHPRQPWLFSAGADGTIRLF 732 (733)
T ss_pred CcEEEEeeeeehhhhcCCceEeeeeccCceeecccceEeecccCCCceEEecCCCceEEee
Confidence 999998642 12366778888754 8889999999999999999999998
No 184
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.73 E-value=1.7e-15 Score=115.72 Aligned_cols=202 Identities=15% Similarity=0.202 Sum_probs=151.9
Q ss_pred cccEEEEEECcCCCEEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCC--CeEEEEECC
Q 026765 20 KKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGD--KTVRLWDAR 97 (233)
Q Consensus 20 ~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d--~~i~iwd~~ 97 (233)
+++|-.++ ..+..|++|-.+|.+.+|.........-....+..+ ..+..+.-++..++++++||.. ..++|||+.
T Consensus 105 ~~~I~gl~--~~dg~Litc~~sG~l~~~~~k~~d~hss~l~~la~g-~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle 181 (412)
T KOG3881|consen 105 TKSIKGLK--LADGTLITCVSSGNLQVRHDKSGDLHSSKLIKLATG-PGLYDVRQTDTDPYIVATGGKENINELKIWDLE 181 (412)
T ss_pred cccccchh--hcCCEEEEEecCCcEEEEeccCCccccccceeeecC-CceeeeccCCCCCceEecCchhcccceeeeecc
Confidence 44444444 235578888899999999986432111122233333 5677777777778888999999 889999998
Q ss_pred CCeeeeeee-ec---------CCeeEEEECCC--CCeEEEEcCCCcEEEEEcCCC-eeeeeeec-CceeeEEEECCCCCE
Q 026765 98 SGKCSQQAE-LS---------GENINITYKPD--GTHIAVGNRDDELTILDVRKF-KPIHRRKF-GYEVNEIAWNMTGEM 163 (233)
Q Consensus 98 ~~~~~~~~~-~~---------~~~~~~~~~~~--~~~l~~~~~d~~i~i~d~~~~-~~~~~~~~-~~~~~~~~~~~~~~~ 163 (233)
..+.+.+.. +. -....+.|.+. ...+++++.-+.+++||.+.. +++..... ..++.++...|.+++
T Consensus 182 ~~~qiw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~ 261 (412)
T KOG3881|consen 182 QSKQIWSAKNVPNDRLGLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNF 261 (412)
T ss_pred cceeeeeccCCCCccccceeeeeeccceecCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCCcE
Confidence 874332211 11 11234678776 788999999999999999753 34444433 567899999999999
Q ss_pred EEEEeCCCeEEEEecCCceeeeE-EeeecCceeEEEECCCCCEEEEeeCCCcEEEEecCCcE
Q 026765 164 FFLTTGNGTVEVLTYPSLRPLDT-VVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEML 224 (233)
Q Consensus 164 ~~~~~~~~~v~~~~~~~~~~~~~-~~~~~~~v~~i~~~p~~~~las~s~dg~v~iwd~~~~~ 224 (233)
++++...+.+..+|.+.++.... +.+..+.|.+|-.+|..++||+++-|+.|||+|+++..
T Consensus 262 Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~ktrk 323 (412)
T KOG3881|consen 262 IYTGNTKGQLAKFDLRGGKLLGCGLKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRK 323 (412)
T ss_pred EEEecccchhheecccCceeeccccCCccCCcceEEEcCCCceEEeeccceeEEEeecccch
Confidence 99999999999999998887766 77788899999999999999999999999999999843
No 185
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.72 E-value=1.5e-15 Score=125.07 Aligned_cols=205 Identities=17% Similarity=0.220 Sum_probs=147.3
Q ss_pred ccccEEEEEECcCC-CEEEEEeCCCCEEEEecccCCCC--ceeeEEEecCcCcEEEEEEcCCCC-CEEEEEeCCCeEEEE
Q 026765 19 HKKKVHSVAWNCTG-TKLASGSVDQTARVWHIEPHGHG--KVKDIELRGHADSVDQLCWDPKHA-DLIATASGDKTVRLW 94 (233)
Q Consensus 19 H~~~V~~~~~~~~~-~~l~s~~~D~~v~vW~~~~~~~~--~~~~~~~~~h~~~v~~~~~~~~~~-~~l~sg~~d~~i~iw 94 (233)
-...|+|++|+|.. .++|.|..+|.|-+||+...... .........|..++..+.|..+-. .-++|++.||.|..|
T Consensus 241 ~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W 320 (555)
T KOG1587|consen 241 SPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSW 320 (555)
T ss_pred cCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCcccccccccCCcCeEEEEEeccCCCCceEEEecCCcEeee
Confidence 36789999999965 56788889999999999754331 112223456899999999965422 236799999999999
Q ss_pred ECCCCeeee------ee-------eecCCeeEEEECC-CCCeEEEEcCCCcEEEEEcCCCeeee---------eeecCce
Q 026765 95 DARSGKCSQ------QA-------ELSGENINITYKP-DGTHIAVGNRDDELTILDVRKFKPIH---------RRKFGYE 151 (233)
Q Consensus 95 d~~~~~~~~------~~-------~~~~~~~~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~---------~~~~~~~ 151 (233)
+++.-.... .. .......++.|.+ +...+++|+..|.|.--+-...+... -..+..+
T Consensus 321 ~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~ 400 (555)
T KOG1587|consen 321 DTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGP 400 (555)
T ss_pred eccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCcccccccccccccccccCcc
Confidence 876432211 00 1112345678876 45678899999987653322111111 1123457
Q ss_pred eeEEEECCCCCEEEEEeCCCeEEEEecC-CceeeeEEeeecCceeEEEECCCCC-EEEEeeCCCcEEEEecCCc
Q 026765 152 VNEIAWNMTGEMFFLTTGNGTVEVLTYP-SLRPLDTVVAHTAGCYCIAIDPMGR-YFAVGSADSLVSLWDISEM 223 (233)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~~~~~~~~~~v~~i~~~p~~~-~las~s~dg~v~iwd~~~~ 223 (233)
+..+.++|-+..+++.++|-++++|... ...++..+..+...|++++|||... .|+++..||.+.|||+...
T Consensus 401 v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~ 474 (555)
T KOG1587|consen 401 VYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLDSSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQD 474 (555)
T ss_pred eEeeecCCCccceeeeeccceeEeccccCCCCcchhhhhccceeeeeEEcCcCceEEEEEcCCCceehhhhhcc
Confidence 8899999999888888889999999987 6677777777888899999999774 6788889999999999744
No 186
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.72 E-value=2.3e-14 Score=115.56 Aligned_cols=207 Identities=27% Similarity=0.485 Sum_probs=157.6
Q ss_pred eeeCccccEEEEEECcCCCEEEEEeCCCCEEEEecccCCCCceeeEEEecCc-CcEEEEEE-cCCCCCEEEEEeC-CCeE
Q 026765 15 EYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHA-DSVDQLCW-DPKHADLIATASG-DKTV 91 (233)
Q Consensus 15 ~~~~H~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~-~~v~~~~~-~~~~~~~l~sg~~-d~~i 91 (233)
.+.+|...+.++.|.+.+..++.++.|+.+.+|+..... .....+.++. ..+..+.+ .+++...++..+. |+.+
T Consensus 60 ~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~ 136 (466)
T COG2319 60 LLRGHEDSITSIAFSPDGELLLSGSSDGTIKLWDLDNGE---KLIKSLEGLHDSSVSKLALSSPDGNSILLASSSLDGTV 136 (466)
T ss_pred eeeeccceEEEEEECCCCcEEEEecCCCcEEEEEcCCCc---eeEEEEeccCCCceeeEEEECCCcceEEeccCCCCccE
Confidence 456899999999999999999999999999999986532 1222344433 36776766 6665534544444 9999
Q ss_pred EEEECCC-Ceeeeeeeec-CCeeEEEECCCCCeEEEEcC-CCcEEEEEcCCCeeeeeee-cCceeeEEEECCCCCEEEEE
Q 026765 92 RLWDARS-GKCSQQAELS-GENINITYKPDGTHIAVGNR-DDELTILDVRKFKPIHRRK-FGYEVNEIAWNMTGEMFFLT 167 (233)
Q Consensus 92 ~iwd~~~-~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~-d~~i~i~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 167 (233)
.+||... .........+ ..+..+.|+|++..+++++. ++.+.+|++.....+.... +...+..+.|++++..++++
T Consensus 137 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 216 (466)
T COG2319 137 KLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIAS 216 (466)
T ss_pred EEEEecCCCeEEEEEecCcccEEEEEECCCCCEEEecCCCCCceEEEEcCCCceEEeeccCCCceEEEEEcCCcceEEEE
Confidence 9999987 4444444433 44556999999998888885 9999999998755555444 46679999999999844444
Q ss_pred -eCCCeEEEEecCCceeee-EEeeecCceeEEEECCCCCEEEEeeCCCcEEEEecCCcEE
Q 026765 168 -TGNGTVEVLTYPSLRPLD-TVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLC 225 (233)
Q Consensus 168 -~~~~~v~~~~~~~~~~~~-~~~~~~~~v~~i~~~p~~~~las~s~dg~v~iwd~~~~~~ 225 (233)
+.++.+.+|+......+. .+.+|...+ ...|+|++.++++++.|+.+++||+.....
T Consensus 217 ~~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~ 275 (466)
T COG2319 217 GSSDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSS 275 (466)
T ss_pred ecCCCcEEEEECCCCcEEeeecCCCCcce-eEeECCCCCEEEEecCCCcEEEeeecCCCc
Confidence 889999999887666666 577787775 448999998999999999999999986654
No 187
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.72 E-value=1.6e-15 Score=123.24 Aligned_cols=201 Identities=19% Similarity=0.303 Sum_probs=140.2
Q ss_pred cEEEEEECcCCCEEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCCeEEEEECCCC--
Q 026765 22 KVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSG-- 99 (233)
Q Consensus 22 ~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~iwd~~~~-- 99 (233)
.|+.++|-|||..|+-+. +..+.+||++.++ ....+++|++.|++++|+.+| +.++||+.|+.|.+|+-.-.
T Consensus 14 ci~d~afkPDGsqL~lAA-g~rlliyD~ndG~----llqtLKgHKDtVycVAys~dG-krFASG~aDK~VI~W~~klEG~ 87 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAA-GSRLLVYDTSDGT----LLQPLKGHKDTVYCVAYAKDG-KRFASGSADKSVIIWTSKLEGI 87 (1081)
T ss_pred chheeEECCCCceEEEec-CCEEEEEeCCCcc----cccccccccceEEEEEEccCC-ceeccCCCceeEEEecccccce
Confidence 899999999999987766 5678899987543 223689999999999999875 67899999999999985421
Q ss_pred ---------eeeeeeee---------------------------cCCeeEEEECCCCCeEEEEcCCCcEEEEEcCCCeee
Q 026765 100 ---------KCSQQAEL---------------------------SGENINITYKPDGTHIAVGNRDDELTILDVRKFKPI 143 (233)
Q Consensus 100 ---------~~~~~~~~---------------------------~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~ 143 (233)
+|+..... .....+++|..||.+++.|..+|+|.+=+-...+.+
T Consensus 88 LkYSH~D~IQCMsFNP~~h~LasCsLsdFglWS~~qK~V~K~kss~R~~~CsWtnDGqylalG~~nGTIsiRNk~gEek~ 167 (1081)
T KOG1538|consen 88 LKYSHNDAIQCMSFNPITHQLASCSLSDFGLWSPEQKSVSKHKSSSRIICCSWTNDGQYLALGMFNGTISIRNKNGEEKV 167 (1081)
T ss_pred eeeccCCeeeEeecCchHHHhhhcchhhccccChhhhhHHhhhhheeEEEeeecCCCcEEEEeccCceEEeecCCCCcce
Confidence 12111000 011345889999999999999999988764332222
Q ss_pred eeee---cCceeeEEEECCCC-----CEEEEEeCCCeEEEEecCCceeeeEEeeecCceeEEEECCCCCEEEEeeCCCcE
Q 026765 144 HRRK---FGYEVNEIAWNMTG-----EMFFLTTGNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLV 215 (233)
Q Consensus 144 ~~~~---~~~~~~~~~~~~~~-----~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~las~s~dg~v 215 (233)
.-.. .+.++.+++|+|.. +.+++..-+.++.++.+. ++.+..-..-.....|+++.|+|.++..|+.|+.+
T Consensus 168 ~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~Ls-G~~Igk~r~L~FdP~CisYf~NGEy~LiGGsdk~L 246 (1081)
T KOG1538|consen 168 KIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLS-GKQIGKDRALNFDPCCISYFTNGEYILLGGSDKQL 246 (1081)
T ss_pred EEeCCCCCCCCceEEEecCCCCCCccceEEEEeccceeEEEEec-ceeecccccCCCCchhheeccCCcEEEEccCCCce
Confidence 2222 24578999999864 345555556666666553 33333222233445799999999999999999999
Q ss_pred EEEecCCcEEEEeee
Q 026765 216 SLWDISEMLCVRTFT 230 (233)
Q Consensus 216 ~iwd~~~~~~i~~~~ 230 (233)
.+|-.+ |-.+-+..
T Consensus 247 ~~fTR~-GvrLGTvg 260 (1081)
T KOG1538|consen 247 SLFTRD-GVRLGTVG 260 (1081)
T ss_pred EEEeec-CeEEeecc
Confidence 999654 54444443
No 188
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.71 E-value=4.4e-15 Score=108.35 Aligned_cols=154 Identities=21% Similarity=0.347 Sum_probs=109.2
Q ss_pred EEEEcCCCCCEEEEEeC---------CCeEEEEECCCCe-eeeeeee--cCCeeEEEECCCCCeEEEE--cCCCcEEEEE
Q 026765 71 QLCWDPKHADLIATASG---------DKTVRLWDARSGK-CSQQAEL--SGENINITYKPDGTHIAVG--NRDDELTILD 136 (233)
Q Consensus 71 ~~~~~~~~~~~l~sg~~---------d~~i~iwd~~~~~-~~~~~~~--~~~~~~~~~~~~~~~l~~~--~~d~~i~i~d 136 (233)
.+.|+|.|..+++.... -+...+|-++... ....... .+++.+++|+|+++.+++. ..+..+.+||
T Consensus 10 ~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~WsP~g~~favi~g~~~~~v~lyd 89 (194)
T PF08662_consen 10 KLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAWSPNGNEFAVIYGSMPAKVTLYD 89 (194)
T ss_pred EEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEECcCCCEEEEEEccCCcccEEEc
Confidence 45677777666555441 1334555553322 2223333 3457889999999997654 3567899999
Q ss_pred cCCCeeeeeeecCceeeEEEECCCCCEEEEEeC---CCeEEEEecCCceeeeEEeeecCceeEEEECCCCCEEEEeeC--
Q 026765 137 VRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTG---NGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSA-- 211 (233)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~v~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~las~s~-- 211 (233)
++ .+.+.... ....+.+.|+|+|+++++++- .|.+.+||.++.+.+.... ...+..++|+|+|++|++++.
T Consensus 90 ~~-~~~i~~~~-~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~--~~~~t~~~WsPdGr~~~ta~t~~ 165 (194)
T PF08662_consen 90 VK-GKKIFSFG-TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFE--HSDATDVEWSPDGRYLATATTSP 165 (194)
T ss_pred Cc-ccEeEeec-CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccc--cCcEEEEEEcCCCCEEEEEEecc
Confidence 96 44444443 346788999999999998863 4789999999888876654 335789999999999998874
Q ss_pred ----CCcEEEEecCCcEEEEee
Q 026765 212 ----DSLVSLWDISEMLCVRTF 229 (233)
Q Consensus 212 ----dg~v~iwd~~~~~~i~~~ 229 (233)
|+.++||+.. |..+.+.
T Consensus 166 r~~~dng~~Iw~~~-G~~l~~~ 186 (194)
T PF08662_consen 166 RLRVDNGFKIWSFQ-GRLLYKK 186 (194)
T ss_pred ceeccccEEEEEec-CeEeEec
Confidence 7889999996 7666654
No 189
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.71 E-value=1.9e-14 Score=118.14 Aligned_cols=205 Identities=13% Similarity=0.124 Sum_probs=136.9
Q ss_pred ceeeeCccccEEEEEECcCCCEEEEEeC---CCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCC
Q 026765 13 SREYTGHKKKVHSVAWNCTGTKLASGSV---DQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDK 89 (233)
Q Consensus 13 ~~~~~~H~~~V~~~~~~~~~~~l~s~~~---D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~ 89 (233)
.+.+..|...+.+.+|+|||+.|+..+. +..|.+|++.... . ..+..+...+...+|+|++..++++.+.++
T Consensus 194 ~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~---~--~~l~~~~g~~~~~~~SPDG~~la~~~~~~g 268 (435)
T PRK05137 194 VRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQ---R--ELVGNFPGMTFAPRFSPDGRKVVMSLSQGG 268 (435)
T ss_pred cEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCc---E--EEeecCCCcccCcEECCCCCEEEEEEecCC
Confidence 3557788889999999999999988764 4679999986422 1 234455667778899999877777777766
Q ss_pred e--EEEEECCCCeeeeeeeecCCeeEEEECCCCCeEEEEcC-CC--cEEEEEcCCCeeeeeeecCceeeEEEECCCCCEE
Q 026765 90 T--VRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNR-DD--ELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMF 164 (233)
Q Consensus 90 ~--i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-d~--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (233)
. |.+||+.++................|+|||++|+..+. ++ .|.++|+...+...............|+|+|+.+
T Consensus 269 ~~~Iy~~d~~~~~~~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~~~lt~~~~~~~~~~~SpdG~~i 348 (435)
T PRK05137 269 NTDIYTMDLRSGTTTRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNPRRISFGGGRYSTPVWSPRGDLI 348 (435)
T ss_pred CceEEEEECCCCceEEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCeEEeecCCCcccCeEECCCCCEE
Confidence 5 66678887765443222233456899999998886653 33 5777887654433222223345567899999999
Q ss_pred EEEeCC---CeEEEEecCCceeeeEEeeecCceeEEEECCCCCEEEEeeCC------CcEEEEecCCcE
Q 026765 165 FLTTGN---GTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSAD------SLVSLWDISEML 224 (233)
Q Consensus 165 ~~~~~~---~~v~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~las~s~d------g~v~iwd~~~~~ 224 (233)
+....+ ..+.+++..... ...+. ....+...+|+|+|++|+..+.+ ..+.++|+..+.
T Consensus 349 a~~~~~~~~~~i~~~d~~~~~-~~~lt-~~~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~~ 415 (435)
T PRK05137 349 AFTKQGGGQFSIGVMKPDGSG-ERILT-SGFLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGRN 415 (435)
T ss_pred EEEEcCCCceEEEEEECCCCc-eEecc-CCCCCCCCeECCCCCEEEEEEccCCCCCcceEEEEECCCCc
Confidence 876543 356777764432 22222 22345678999999988765543 257788876543
No 190
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.71 E-value=1.2e-14 Score=119.21 Aligned_cols=204 Identities=15% Similarity=0.132 Sum_probs=135.1
Q ss_pred ceeeeCccccEEEEEECcCCCEEEEEeCC---CCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCC
Q 026765 13 SREYTGHKKKVHSVAWNCTGTKLASGSVD---QTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDK 89 (233)
Q Consensus 13 ~~~~~~H~~~V~~~~~~~~~~~l~s~~~D---~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~ 89 (233)
.+.+..|...+.+.+|+|||+.|+..+.+ ..|.+|++.... . ..+...........|+|++..++++.+.++
T Consensus 196 ~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~---~--~~l~~~~g~~~~~~~SpDG~~l~~~~s~~g 270 (433)
T PRK04922 196 PQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQ---R--ELVASFRGINGAPSFSPDGRRLALTLSRDG 270 (433)
T ss_pred ceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCC---E--EEeccCCCCccCceECCCCCEEEEEEeCCC
Confidence 34566778889999999999999888743 358888885422 1 123333444557899999877777766665
Q ss_pred --eEEEEECCCCeeeeeeeecCCeeEEEECCCCCeEEEEcC-CCc--EEEEEcCCCeeeeeeecCceeeEEEECCCCCEE
Q 026765 90 --TVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNR-DDE--LTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMF 164 (233)
Q Consensus 90 --~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-d~~--i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (233)
.|.+||+.+++...............|+|||++++..+. ++. +.++|+.+.+.......+......+|+|+|+.+
T Consensus 271 ~~~Iy~~d~~~g~~~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~~~lt~~g~~~~~~~~SpDG~~I 350 (433)
T PRK04922 271 NPEIYVMDLGSRQLTRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSAERLTFQGNYNARASVSPDGKKI 350 (433)
T ss_pred CceEEEEECCCCCeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCeEEeecCCCCccCEEECCCCCEE
Confidence 588999988765443222233456899999998886653 444 566666554332211222234467999999999
Q ss_pred EEEeCCC---eEEEEecCCceeeeEEeeecCceeEEEECCCCCEEEEeeCC---CcEEEEecCCc
Q 026765 165 FLTTGNG---TVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSAD---SLVSLWDISEM 223 (233)
Q Consensus 165 ~~~~~~~---~v~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~las~s~d---g~v~iwd~~~~ 223 (233)
+....++ .+.+|+..+++.. .+. +.......+|+|+|++|+..+.+ +.+.++++..+
T Consensus 351 a~~~~~~~~~~I~v~d~~~g~~~-~Lt-~~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~g~ 413 (433)
T PRK04922 351 AMVHGSGGQYRIAVMDLSTGSVR-TLT-PGSLDESPSFAPNGSMVLYATREGGRGVLAAVSTDGR 413 (433)
T ss_pred EEEECCCCceeEEEEECCCCCeE-ECC-CCCCCCCceECCCCCEEEEEEecCCceEEEEEECCCC
Confidence 8775433 6888898766543 332 33334567899999988776653 45788888643
No 191
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.71 E-value=1.1e-14 Score=105.15 Aligned_cols=190 Identities=13% Similarity=0.198 Sum_probs=133.5
Q ss_pred cccEEEEEECcCCCEEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCCeEEEEECCCC
Q 026765 20 KKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSG 99 (233)
Q Consensus 20 ~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~iwd~~~~ 99 (233)
-..|+++-..|..+-++.++.|+.+.-||++.. + ...+++||++.|.++.--...+. ++||+.||++|+||.+++
T Consensus 114 vPeINam~ldP~enSi~~AgGD~~~y~~dlE~G---~-i~r~~rGHtDYvH~vv~R~~~~q-ilsG~EDGtvRvWd~kt~ 188 (325)
T KOG0649|consen 114 VPEINAMWLDPSENSILFAGGDGVIYQVDLEDG---R-IQREYRGHTDYVHSVVGRNANGQ-ILSGAEDGTVRVWDTKTQ 188 (325)
T ss_pred CCccceeEeccCCCcEEEecCCeEEEEEEecCC---E-EEEEEcCCcceeeeeeecccCcc-eeecCCCccEEEEecccc
Confidence 456899999998887778888999999999853 3 34579999999999987333344 569999999999999999
Q ss_pred eeeeeeeecCCe---------eEEEECCCCCeEEEEcCCCcEEEEEcCCCeeeeeeecCceeeEEEECCCCCEEEEEeCC
Q 026765 100 KCSQQAELSGEN---------INITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGN 170 (233)
Q Consensus 100 ~~~~~~~~~~~~---------~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (233)
++++.+...... .-.+..-+..++++|+ ...+.+|.++..+++.......++..+.| ..+.+++++..
T Consensus 189 k~v~~ie~yk~~~~lRp~~g~wigala~~edWlvCGg-Gp~lslwhLrsse~t~vfpipa~v~~v~F--~~d~vl~~G~g 265 (325)
T KOG0649|consen 189 KHVSMIEPYKNPNLLRPDWGKWIGALAVNEDWLVCGG-GPKLSLWHLRSSESTCVFPIPARVHLVDF--VDDCVLIGGEG 265 (325)
T ss_pred ceeEEeccccChhhcCcccCceeEEEeccCceEEecC-CCceeEEeccCCCceEEEecccceeEeee--ecceEEEeccc
Confidence 987766543221 1244455566776554 56799999999988887777767777766 55678888888
Q ss_pred CeEEEEecCCceeeeEEeeecCceeEEEECCC-CCEEEEeeCCCcEEEE
Q 026765 171 GTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPM-GRYFAVGSADSLVSLW 218 (233)
Q Consensus 171 ~~v~~~~~~~~~~~~~~~~~~~~v~~i~~~p~-~~~las~s~dg~v~iw 218 (233)
+.+.-|.+. +.............++.+++-. -++|..++....+.|+
T Consensus 266 ~~v~~~~l~-Gvl~a~ip~~s~~c~s~s~~~~p~k~~s~ag~s~~~~i~ 313 (325)
T KOG0649|consen 266 NHVQSYTLN-GVLQANIPVESTACYSASWQTSPIKFISIAGFSNKLHIL 313 (325)
T ss_pred cceeeeeec-cEEEEeccCCccceeeecccCCceEEEEecccceeeeee
Confidence 888888764 2222222222223444444422 2566667777777665
No 192
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.70 E-value=4.3e-16 Score=117.06 Aligned_cols=209 Identities=18% Similarity=0.231 Sum_probs=140.2
Q ss_pred cceeeeCccccEEEEEECc--CCCEEEEEeCCCCEEEEecccCCC---------C-------------ceee--------
Q 026765 12 HSREYTGHKKKVHSVAWNC--TGTKLASGSVDQTARVWHIEPHGH---------G-------------KVKD-------- 59 (233)
Q Consensus 12 ~~~~~~~H~~~V~~~~~~~--~~~~l~s~~~D~~v~vW~~~~~~~---------~-------------~~~~-------- 59 (233)
..++|.+|.+.++.+.|.. ....+.||+.||+||+||+..+.. . .+..
T Consensus 62 ~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~a~~~~~~~~~~~f~~ld~nck~~ii~~GtE~~~s 141 (376)
T KOG1188|consen 62 LLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAESARISWTQQSGTPFICLDLNCKKNIIACGTELTRS 141 (376)
T ss_pred hhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhhhheeccCCCCCcceEeeccCcCCeEEeccccccC
Confidence 4567899999999999976 456789999999999999753210 0 0000
Q ss_pred ---E--------------EEecCcCcEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCe----eeeeeeecCCeeEEEECC
Q 026765 60 ---I--------------ELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGK----CSQQAELSGENINITYKP 118 (233)
Q Consensus 60 ---~--------------~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~----~~~~~~~~~~~~~~~~~~ 118 (233)
+ -...|.+-|+++.|+|.++++|+||+-||.|.+||+.... ....+.....+-.+.|..
T Consensus 142 ~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~EeDaL~~viN~~sSI~~igw~~ 221 (376)
T KOG1188|consen 142 DASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNEEDALLHVINHGSSIHLIGWLS 221 (376)
T ss_pred ceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCcchhhHHHhhcccceeeeeeeec
Confidence 0 0236899999999999999999999999999999997652 222333344456688876
Q ss_pred CC-CeEEEEcCCCcEEEEEcCCCeeeeeeecC--------------ceeeEEEECCCCCEEEEEeC-CCeEEEEecC---
Q 026765 119 DG-THIAVGNRDDELTILDVRKFKPIHRRKFG--------------YEVNEIAWNMTGEMFFLTTG-NGTVEVLTYP--- 179 (233)
Q Consensus 119 ~~-~~l~~~~~d~~i~i~d~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~--- 179 (233)
++ +.|.+-+-.....+|++............ .-|+... ..+...+++++. .+...++-+.
T Consensus 222 ~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~~~~d~r~~~~~dY~I~~~~-~~~~~~~~l~g~~~n~~~~~~~~~~~ 300 (376)
T KOG1188|consen 222 KKYKRIMCLTHMETFAIYELEDGSEETWLENPDVSADDLRKEDNCDYVINEHS-PGDKDTCALAGTDSNKGTIFPLVDTS 300 (376)
T ss_pred CCcceEEEEEccCceeEEEccCCChhhcccCccchhhhHHhhhhhhheeeccc-CCCcceEEEeccccCceeEEEeeecc
Confidence 65 45777777888999998765432221110 1122211 223445555544 4555555432
Q ss_pred Cc---eeeeEEee-ecCceeEEEECCCCCEEEEeeCCCcEEEEecC
Q 026765 180 SL---RPLDTVVA-HTAGCYCIAIDPMGRYFAVGSADSLVSLWDIS 221 (233)
Q Consensus 180 ~~---~~~~~~~~-~~~~v~~i~~~p~~~~las~s~dg~v~iwd~~ 221 (233)
++ .....+.+ |..-|.++.|.-.+..+.||++||.+++|...
T Consensus 301 s~~~~~~~a~l~g~~~eiVR~i~~~~~~~~l~TGGEDG~l~~Wk~~ 346 (376)
T KOG1188|consen 301 SGSLLTEPAILQGGHEEIVRDILFDVKNDVLYTGGEDGLLQAWKVE 346 (376)
T ss_pred cccccCccccccCCcHHHHHHHhhhcccceeeccCCCceEEEEecC
Confidence 11 22233444 66678889999889999999999999999853
No 193
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.70 E-value=7e-16 Score=118.24 Aligned_cols=185 Identities=18% Similarity=0.300 Sum_probs=138.8
Q ss_pred ccccEEEEEECcCCC-EEEEEeCCCCEEEEecccCCCCc----e-eeEEEecCcCcEEEEEEcCCCCCEEEEEeCCCeEE
Q 026765 19 HKKKVHSVAWNCTGT-KLASGSVDQTARVWHIEPHGHGK----V-KDIELRGHADSVDQLCWDPKHADLIATASGDKTVR 92 (233)
Q Consensus 19 H~~~V~~~~~~~~~~-~l~s~~~D~~v~vW~~~~~~~~~----~-~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~ 92 (233)
...+|+.+.|.+.+. .+|||+.|..||+|.++....+. + ....+..|..+|+.+.|+|++ .+|+||+.+|.|.
T Consensus 12 ~~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~g-elLASg~D~g~v~ 90 (434)
T KOG1009|consen 12 DHEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDG-ELLASGGDGGEVF 90 (434)
T ss_pred CCCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCc-CeeeecCCCceEE
Confidence 367899999998776 99999999999999987533222 1 122467899999999999985 6899999999999
Q ss_pred EEECCCCeeeeeeeecCCeeEEEECCCCCeEEEEcCCCcEEEEEcCCCeeeeeeecCceeeEEEECCCCCEEEEEeCCCe
Q 026765 93 LWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNGT 172 (233)
Q Consensus 93 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (233)
+|....-+. + .... .....+. .++ ++. ....+..++..++|+++++++++++.|+.
T Consensus 91 lWk~~~~~~---~--~~d~-e~~~~ke-~w~----------v~k-------~lr~h~~diydL~Ws~d~~~l~s~s~dns 146 (434)
T KOG1009|consen 91 LWKQGDVRI---F--DADT-EADLNKE-KWV----------VKK-------VLRGHRDDIYDLAWSPDSNFLVSGSVDNS 146 (434)
T ss_pred EEEecCcCC---c--cccc-hhhhCcc-ceE----------EEE-------EecccccchhhhhccCCCceeeeeeccce
Confidence 998654110 0 0000 0000000 011 111 01114457889999999999999999999
Q ss_pred EEEEecCCceeeeEEeeecCceeEEEECCCCCEEEEeeCCCcEEEEecCCcEEEEe
Q 026765 173 VEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRT 228 (233)
Q Consensus 173 v~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~las~s~dg~v~iwd~~~~~~i~~ 228 (233)
+++||...+.....+..|..-|..++|.|-++++++-+.|+..+++.+.....++.
T Consensus 147 ~~l~Dv~~G~l~~~~~dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~~~~~~ 202 (434)
T KOG1009|consen 147 VRLWDVHAGQLLAILDDHEHYVQGVAWDPLNQYVASKSSDRHPEGFSAKLKQVIKR 202 (434)
T ss_pred EEEEEeccceeEeeccccccccceeecchhhhhhhhhccCcccceeeeeeeeeeee
Confidence 99999999999999999999999999999999999999999988888876554443
No 194
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.70 E-value=1.2e-15 Score=120.88 Aligned_cols=195 Identities=20% Similarity=0.256 Sum_probs=141.0
Q ss_pred CCCEEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCe----------
Q 026765 31 TGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGK---------- 100 (233)
Q Consensus 31 ~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~---------- 100 (233)
.+--|+.|=.-|.|.+.|.......+....+..-.+..|+++.|-|.+..+++.+-.+|.+.+||.....
T Consensus 184 ~g~dllIGf~tGqvq~idp~~~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~ 263 (636)
T KOG2394|consen 184 KGLDLLIGFTTGQVQLIDPINFEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQAL 263 (636)
T ss_pred CCcceEEeeccCceEEecchhhHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCccccc
Confidence 4555667766778877776432211111101111346899999999888888889999999999763210
Q ss_pred ----e--------------eeeee-ecCCeeEEEECCCCCeEEEEcCCCcEEEEEcCCCeeeeeee-cCceeeEEEECCC
Q 026765 101 ----C--------------SQQAE-LSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRK-FGYEVNEIAWNMT 160 (233)
Q Consensus 101 ----~--------------~~~~~-~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~-~~~~~~~~~~~~~ 160 (233)
. ...+. ..+.+...+|+|||++||+.+.||.++|||..+.+.+-..+ .-....+++|+||
T Consensus 264 k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSPD 343 (636)
T KOG2394|consen 264 KDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSPD 343 (636)
T ss_pred CCCCeeEEeeeeccccCCccceeEeccccccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEcCC
Confidence 0 00000 11223457899999999999999999999987755443322 1235789999999
Q ss_pred CCEEEEEeCCCeEEEEecCCceeeeEEeeecCceeEEEECCC-----------------------------------C--
Q 026765 161 GEMFFLTTGNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPM-----------------------------------G-- 203 (233)
Q Consensus 161 ~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~i~~~p~-----------------------------------~-- 203 (233)
|++|++|++|.-|.+|.+...+.+..=.+|.+.|..|+|+|- +
T Consensus 344 GKyIvtGGEDDLVtVwSf~erRVVARGqGHkSWVs~VaFDpytt~~ee~~~~~~~~~~~~~~~~~~~~r~~~~~S~~~~~ 423 (636)
T KOG2394|consen 344 GKYIVTGGEDDLVTVWSFEERRVVARGQGHKSWVSVVAFDPYTTSTEEWNNFSGMDSTFSDVAHDFEIRANGTGSAEGCP 423 (636)
T ss_pred ccEEEecCCcceEEEEEeccceEEEeccccccceeeEeecccccccccccccccccccccchhcccccccCCCCCcCCCc
Confidence 999999999999999999999988888899999999999831 1
Q ss_pred -----------CEEEEeeCCCcEEEEecCCcEE
Q 026765 204 -----------RYFAVGSADSLVSLWDISEMLC 225 (233)
Q Consensus 204 -----------~~las~s~dg~v~iwd~~~~~~ 225 (233)
-.|.+.+.|..+.+||+.....
T Consensus 424 ~s~~~~~~~v~YRfGSVGqDTqlcLWDlteD~L 456 (636)
T KOG2394|consen 424 LSSFNRINSVTYRFGSVGQDTQLCLWDLTEDVL 456 (636)
T ss_pred ccccccccceEEEeecccccceEEEEecchhhc
Confidence 1477888999999999987654
No 195
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.69 E-value=5.2e-16 Score=123.34 Aligned_cols=213 Identities=10% Similarity=0.095 Sum_probs=143.5
Q ss_pred eeeCccccEEEEEECcCCCEEEEEeCCCCEEEEeccc---CC-CCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCCe
Q 026765 15 EYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEP---HG-HGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKT 90 (233)
Q Consensus 15 ~~~~H~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~---~~-~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~ 90 (233)
++..|...|+.++|.|....|++|+.|+++++|++.. .. ......+++++|..+|.|++..+++ ..+++|+-||+
T Consensus 289 tl~s~~d~ir~l~~~~sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gPVl~v~v~~n~-~~~ysgg~Dg~ 367 (577)
T KOG0642|consen 289 TLRSHDDCIRALAFHPSEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGPVLCVVVPSNG-EHCYSGGIDGT 367 (577)
T ss_pred eeecchhhhhhhhcCCCCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCceEEEEecCCc-eEEEeeccCce
Confidence 6778999999999999999999999999999999932 11 1123456789999999999998875 57789999999
Q ss_pred EEEEECCCCe----------eeeeee-ecCCeeEEEECCCCCeEEEEcCCCcEEEEEcCCCeee--eeeecCceeeEEEE
Q 026765 91 VRLWDARSGK----------CSQQAE-LSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPI--HRRKFGYEVNEIAW 157 (233)
Q Consensus 91 i~iwd~~~~~----------~~~~~~-~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~--~~~~~~~~~~~~~~ 157 (233)
|+.|++.... ....+. ....++.+++++....|++++.||+++.|+.....+. ...+......++++
T Consensus 368 I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs~DgTvr~w~~~~~~~~~f~~~~e~g~Plsvd~ 447 (577)
T KOG0642|consen 368 IRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCSSDGTVRLWEPTEESPCTFGEPKEHGYPLSVDR 447 (577)
T ss_pred eeeeccCCCCCcccccCcchhccceeccccceeeeeecccccceeeecCCceEEeeccCCcCccccCCccccCCcceEee
Confidence 9999775221 111122 2234557889999899999999999999997655541 11111112233333
Q ss_pred CCCCCEEEEEeCCCeEEEEe---cCCceeeeEEeee-------cCceeEEEECCCCCEEEEeeCCCcEEEEecCCcEEEE
Q 026765 158 NMTGEMFFLTTGNGTVEVLT---YPSLRPLDTVVAH-------TAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVR 227 (233)
Q Consensus 158 ~~~~~~~~~~~~~~~v~~~~---~~~~~~~~~~~~~-------~~~v~~i~~~p~~~~las~s~dg~v~iwd~~~~~~i~ 227 (233)
.... .+....+.....+. ......+..+... ...++-+-++|.+.+..++-.|+.|+++|...+.++.
T Consensus 448 ~ss~--~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~~l~ 525 (577)
T KOG0642|consen 448 TSSR--PAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTGKILH 525 (577)
T ss_pred ccch--hHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceecccccccccch
Confidence 2222 11122222233333 3222222222111 1235667888999999999999999999999998876
Q ss_pred eee
Q 026765 228 TFT 230 (233)
Q Consensus 228 ~~~ 230 (233)
...
T Consensus 526 s~~ 528 (577)
T KOG0642|consen 526 SMV 528 (577)
T ss_pred hee
Confidence 543
No 196
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.68 E-value=6.9e-15 Score=108.62 Aligned_cols=193 Identities=21% Similarity=0.313 Sum_probs=139.5
Q ss_pred eCccccEEEEEECcC-CCEEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCCeEEEEE
Q 026765 17 TGHKKKVHSVAWNCT-GTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWD 95 (233)
Q Consensus 17 ~~H~~~V~~~~~~~~-~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~iwd 95 (233)
+.|.+++++..|+.- =+++.+.|-|-+..|||++.+-... ...++-+|...|+.++|...+..+++|.|.||.+|+||
T Consensus 147 s~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~~~~-vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFD 225 (364)
T KOG0290|consen 147 SEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGVSGT-VKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFD 225 (364)
T ss_pred cccCCcccccccccCCcceeEeecccCeEEEEEEeeccccc-eeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEE
Confidence 457889999999874 4788999999999999998642222 23467789999999999987788999999999999999
Q ss_pred CCCCeeeeee-e--e-cCCeeEEEECCC-CCeEEEEcCC-CcEEEEEcCCCe-eeee-eecCceeeEEEECCCCCE-EEE
Q 026765 96 ARSGKCSQQA-E--L-SGENINITYKPD-GTHIAVGNRD-DELTILDVRKFK-PIHR-RKFGYEVNEIAWNMTGEM-FFL 166 (233)
Q Consensus 96 ~~~~~~~~~~-~--~-~~~~~~~~~~~~-~~~l~~~~~d-~~i~i~d~~~~~-~~~~-~~~~~~~~~~~~~~~~~~-~~~ 166 (233)
++.-.-.... + . +.+-..++|+++ .+++|+-..| ..+.|.|+|... ++.+ ..+...++.++|.|.... +++
T Consensus 226 LR~leHSTIIYE~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hict 305 (364)
T KOG0290|consen 226 LRSLEHSTIIYEDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICT 305 (364)
T ss_pred ecccccceEEecCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCCceeee
Confidence 9865321111 1 1 223345777664 5677766655 569999998643 3322 345678999999987654 666
Q ss_pred EeCCCeEEEEecCCc------eeeeEEeeecCceeEEEECCC-CCEEEEeeC
Q 026765 167 TTGNGTVEVLTYPSL------RPLDTVVAHTAGCYCIAIDPM-GRYFAVGSA 211 (233)
Q Consensus 167 ~~~~~~v~~~~~~~~------~~~~~~~~~~~~v~~i~~~p~-~~~las~s~ 211 (233)
++.|..+.+||+... .++..+. -++.|+.+.|++. ..+++.+..
T Consensus 306 aGDD~qaliWDl~q~~~~~~~dPilay~-a~~EVNqi~Ws~~~~Dwiai~~~ 356 (364)
T KOG0290|consen 306 AGDDCQALIWDLQQMPRENGEDPILAYT-AGGEVNQIQWSSSQPDWIAICFG 356 (364)
T ss_pred cCCcceEEEEecccccccCCCCchhhhh-ccceeeeeeecccCCCEEEEEec
Confidence 777899999998642 1233333 4668999999964 567777764
No 197
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.67 E-value=3.2e-15 Score=112.00 Aligned_cols=164 Identities=21% Similarity=0.366 Sum_probs=122.4
Q ss_pred CccceeeeCccccEEEEEECcCC-CEEEEEeCCCCEEEEecccCCCCceeeEE---EecCcCcEEEEEEcCCCCCEEEEE
Q 026765 10 NLHSREYTGHKKKVHSVAWNCTG-TKLASGSVDQTARVWHIEPHGHGKVKDIE---LRGHADSVDQLCWDPKHADLIATA 85 (233)
Q Consensus 10 ~~~~~~~~~H~~~V~~~~~~~~~-~~l~s~~~D~~v~vW~~~~~~~~~~~~~~---~~~h~~~v~~~~~~~~~~~~l~sg 85 (233)
.+..+.|.+|...|+.+.|.|+. ++++|||.|.+||+|+++.. .+... +.||.+.|.++.|++++. .|+|+
T Consensus 125 ~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~----~Cv~VfGG~egHrdeVLSvD~~~~gd-~i~Sc 199 (385)
T KOG1034|consen 125 GQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTD----VCVAVFGGVEGHRDEVLSVDFSLDGD-RIASC 199 (385)
T ss_pred hhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCC----eEEEEecccccccCcEEEEEEcCCCC-eeecc
Confidence 34456788999999999999987 67899999999999999753 23333 357999999999999865 78999
Q ss_pred eCCCeEEEEECCCCee------e----------------ee-----------------------------------eee-
Q 026765 86 SGDKTVRLWDARSGKC------S----------------QQ-----------------------------------AEL- 107 (233)
Q Consensus 86 ~~d~~i~iwd~~~~~~------~----------------~~-----------------------------------~~~- 107 (233)
+.|.++++|++...+. . .. +.+
T Consensus 200 GmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~gd~ilSkscenaI~~w~pg 279 (385)
T KOG1034|consen 200 GMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWFGDFILSKSCENAIVCWKPG 279 (385)
T ss_pred CCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHHhhheeecccCceEEEEecc
Confidence 9999999999872210 0 00 000
Q ss_pred --cCC-----------------------e--eEEEECCCCCeEEEEcCCCcEEEEEcCCCeeeeeee-----cCceeeEE
Q 026765 108 --SGE-----------------------N--INITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRK-----FGYEVNEI 155 (233)
Q Consensus 108 --~~~-----------------------~--~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~-----~~~~~~~~ 155 (233)
+.. + +..+|+|-.+.|+.|.+.|++.+|||+..++..... .+..+...
T Consensus 280 kl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~ 359 (385)
T KOG1034|consen 280 KLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQT 359 (385)
T ss_pred hhhhhhhccCCCccceeeeeEeccCccceEEEEEeecHHHHHHhhccCCCcEEEEECCCCCCccCceEEeccccceeeee
Confidence 000 0 012345556788999999999999998876632222 24568889
Q ss_pred EECCCCCEEEEEeCCCeEEEEec
Q 026765 156 AWNMTGEMFFLTTGNGTVEVLTY 178 (233)
Q Consensus 156 ~~~~~~~~~~~~~~~~~v~~~~~ 178 (233)
+|+.++..+++.+.+++|.-||.
T Consensus 360 sfS~dgs~lv~vcdd~~Vwrwdr 382 (385)
T KOG1034|consen 360 SFSRDGSILVLVCDDGTVWRWDR 382 (385)
T ss_pred eecccCcEEEEEeCCCcEEEEEe
Confidence 99999999999999999999985
No 198
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.66 E-value=1.1e-13 Score=113.22 Aligned_cols=206 Identities=16% Similarity=0.173 Sum_probs=129.5
Q ss_pred eeeeCccccEEEEEECcCCCEEEEEeCC---CCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCCe
Q 026765 14 REYTGHKKKVHSVAWNCTGTKLASGSVD---QTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKT 90 (233)
Q Consensus 14 ~~~~~H~~~V~~~~~~~~~~~l~s~~~D---~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~ 90 (233)
+.+..+...+.+.+|+|||+.|+..+.+ ..|.+||+.... .. .+......+...+|+|++..++++.+.++.
T Consensus 189 ~~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~---~~--~l~~~~g~~~~~~~SPDG~~la~~~~~~g~ 263 (427)
T PRK02889 189 QSALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGR---RR--VVANFKGSNSAPAWSPDGRTLAVALSRDGN 263 (427)
T ss_pred eEeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCC---EE--EeecCCCCccceEECCCCCEEEEEEccCCC
Confidence 3455678889999999999999887753 348888886422 11 233334456688999998777777888888
Q ss_pred EEEEEC--CCCeeeeeeeecCCeeEEEECCCCCeEEEEcC-CCcEEEEEc--CCCeeeeeeecCceeeEEEECCCCCEEE
Q 026765 91 VRLWDA--RSGKCSQQAELSGENINITYKPDGTHIAVGNR-DDELTILDV--RKFKPIHRRKFGYEVNEIAWNMTGEMFF 165 (233)
Q Consensus 91 i~iwd~--~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-d~~i~i~d~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (233)
..||.+ ..+................|+|||++++..+. ++...+|.+ .+.........+.......|+|+|++++
T Consensus 264 ~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~lt~~g~~~~~~~~SpDG~~Ia 343 (427)
T PRK02889 264 SQIYTVNADGSGLRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQRVTFTGSYNTSPRISPDGKLLA 343 (427)
T ss_pred ceEEEEECCCCCcEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEEEecCCCCcCceEECCCCCEEE
Confidence 777754 44432221111223345789999998875553 455666654 3332211111122234578999999998
Q ss_pred EEeCCC---eEEEEecCCceeeeEEeeecCceeEEEECCCCCEEEEeeCCC---cEEEEecCCcEEEE
Q 026765 166 LTTGNG---TVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADS---LVSLWDISEMLCVR 227 (233)
Q Consensus 166 ~~~~~~---~v~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~las~s~dg---~v~iwd~~~~~~i~ 227 (233)
..+.++ .+.+|+..+++.. .+.. .......+|+|+|++|+.++.++ .+.+-++. +...+
T Consensus 344 ~~s~~~g~~~I~v~d~~~g~~~-~lt~-~~~~~~p~~spdg~~l~~~~~~~g~~~l~~~~~~-g~~~~ 408 (427)
T PRK02889 344 YISRVGGAFKLYVQDLATGQVT-ALTD-TTRDESPSFAPNGRYILYATQQGGRSVLAAVSSD-GRIKQ 408 (427)
T ss_pred EEEccCCcEEEEEEECCCCCeE-EccC-CCCccCceECCCCCEEEEEEecCCCEEEEEEECC-CCceE
Confidence 776543 6889998766543 2322 22346789999999988777554 24555553 43333
No 199
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.66 E-value=4.9e-14 Score=121.18 Aligned_cols=221 Identities=16% Similarity=0.162 Sum_probs=152.4
Q ss_pred CCccceeeeCccccEEEEEECcCC-CEEEEEeCCCCEEEEecccCCCC-c--eeeEEEecCcCcEEEEEEcCCCCCEEEE
Q 026765 9 KNLHSREYTGHKKKVHSVAWNCTG-TKLASGSVDQTARVWHIEPHGHG-K--VKDIELRGHADSVDQLCWDPKHADLIAT 84 (233)
Q Consensus 9 ~~~~~~~~~~H~~~V~~~~~~~~~-~~l~s~~~D~~v~vW~~~~~~~~-~--~~~~~~~~h~~~v~~~~~~~~~~~~l~s 84 (233)
+...+..+..|...|..++.+++. .+++|||.||+||+|+...-... . .....+......+.++..-+.+ ..+|.
T Consensus 1037 ~G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~-~~~Av 1115 (1431)
T KOG1240|consen 1037 RGILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNG-DQFAV 1115 (1431)
T ss_pred cceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCC-CeEEE
Confidence 445566777899999999988765 99999999999999997531111 1 1222333345667777777665 46678
Q ss_pred EeCCCeEEEEECCCCe-------eeeeeee--cCCeeEE-EEC-CCCC-eEEEEcCCCcEEEEEcCCCeeeeeeec---C
Q 026765 85 ASGDKTVRLWDARSGK-------CSQQAEL--SGENINI-TYK-PDGT-HIAVGNRDDELTILDVRKFKPIHRRKF---G 149 (233)
Q Consensus 85 g~~d~~i~iwd~~~~~-------~~~~~~~--~~~~~~~-~~~-~~~~-~l~~~~~d~~i~i~d~~~~~~~~~~~~---~ 149 (233)
|+.||.|++.++.... +.+.... .+..+.+ ++. ..+. .++.+..-+.+..||+++...+...+. .
T Consensus 1116 ~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~h 1195 (1431)
T KOG1240|consen 1116 STKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRH 1195 (1431)
T ss_pred EcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCccc
Confidence 8999999999986521 1111111 1222222 221 2233 677788888999999998766554443 2
Q ss_pred ceeeEEEECCCCCEEEEEeCCCeEEEEecCCceeeeEEe-eecCceeEEEECCCC---CEEEE-ee-CCCcEEEEecCCc
Q 026765 150 YEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVV-AHTAGCYCIAIDPMG---RYFAV-GS-ADSLVSLWDISEM 223 (233)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~-~~~~~v~~i~~~p~~---~~las-~s-~dg~v~iwd~~~~ 223 (233)
..+++++.+|.++.++.|+..|.+.+||++-..++.... ++..++..+..+|-- ...++ ++ ..+.|-+||+..|
T Consensus 1196 G~vTSi~idp~~~WlviGts~G~l~lWDLRF~~~i~sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g 1275 (1431)
T KOG1240|consen 1196 GLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRVPILSWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETG 1275 (1431)
T ss_pred cceeEEEecCCceEEEEecCCceEEEEEeecCceeecccCcccCCcceEEeeccCCCCceEEEecccCCCceeeeecccC
Confidence 458999999999999999999999999998777766543 344667777766543 34444 44 5788999999999
Q ss_pred EEEEeee
Q 026765 224 LCVRTFT 230 (233)
Q Consensus 224 ~~i~~~~ 230 (233)
.|-++|-
T Consensus 1276 ~~~~vl~ 1282 (1431)
T KOG1240|consen 1276 LRQTVLW 1282 (1431)
T ss_pred cceEEEE
Confidence 8887764
No 200
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.66 E-value=1.8e-14 Score=122.34 Aligned_cols=206 Identities=17% Similarity=0.279 Sum_probs=137.2
Q ss_pred cccEEEEEECc--CCCEEEEEeCCCCEEEEecccCCCCceeeE----EEe----cCcCcEEEEEEcCCCCCEEEEEeCCC
Q 026765 20 KKKVHSVAWNC--TGTKLASGSVDQTARVWHIEPHGHGKVKDI----ELR----GHADSVDQLCWDPKHADLIATASGDK 89 (233)
Q Consensus 20 ~~~V~~~~~~~--~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~----~~~----~h~~~v~~~~~~~~~~~~l~sg~~d~ 89 (233)
...|+.+.+-. |..++++|+.||.||||+--....++.+.+ .+. +-.+.-.-++|.+..++++ ++|.-.
T Consensus 1109 ~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll-~tGd~r 1187 (1387)
T KOG1517|consen 1109 DTRVSDLELINEQDDALLLTASSDGVIRIWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLL-VTGDVR 1187 (1387)
T ss_pred CCccceeeeecccchhheeeeccCceEEEecccccccCCceeEEeeccccccCccCCCCCeeeehhhhCCeEE-ecCCee
Confidence 44588888743 456899999999999997533211111111 111 2222224568888776665 445578
Q ss_pred eEEEEECCCCeeeeeeeecCC--eeEEE-ECCCCCeEEEEcCCCcEEEEEcCCCee---eeeee-cCc--eeeEEEECCC
Q 026765 90 TVRLWDARSGKCSQQAELSGE--NINIT-YKPDGTHIAVGNRDDELTILDVRKFKP---IHRRK-FGY--EVNEIAWNMT 160 (233)
Q Consensus 90 ~i~iwd~~~~~~~~~~~~~~~--~~~~~-~~~~~~~l~~~~~d~~i~i~d~~~~~~---~~~~~-~~~--~~~~~~~~~~ 160 (233)
.|+|||....++......... +..+. -.+.|+.+++|..||.+++||.|...+ +...+ +.. +|..+.+.+.
T Consensus 1188 ~IRIWDa~~E~~~~diP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~ 1267 (1387)
T KOG1517|consen 1188 SIRIWDAHKEQVVADIPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQ 1267 (1387)
T ss_pred EEEEEecccceeEeecccCCCccceeecccccCCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecC
Confidence 999999987766554443322 22222 233578999999999999999886443 22222 222 3778888876
Q ss_pred CCE-EEEEeCCCeEEEEecCCce--eeeEEeeec--C-ceeEEEECCCCCEEEEeeCCCcEEEEecCCcEEEEe
Q 026765 161 GEM-FFLTTGNGTVEVLTYPSLR--PLDTVVAHT--A-GCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRT 228 (233)
Q Consensus 161 ~~~-~~~~~~~~~v~~~~~~~~~--~~~~~~~~~--~-~v~~i~~~p~~~~las~s~dg~v~iwd~~~~~~i~~ 228 (233)
|-. +++++.+|.|++||++... ...++..|. + ..+++..+++...+|+|+. +.|+||++. |+.+..
T Consensus 1268 G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy~~~-G~~l~~ 1339 (1387)
T KOG1517|consen 1268 GLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIASGSA-QLIKIYSLS-GEQLNI 1339 (1387)
T ss_pred CCcceeeeccCCeEEEEecccCcccccceeeeccccCccceeeeeccCCCeeeecCc-ceEEEEecC-hhhhcc
Confidence 655 8999999999999998632 223333443 3 4899999999999999999 999999987 444333
No 201
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.65 E-value=1.9e-14 Score=118.63 Aligned_cols=208 Identities=18% Similarity=0.217 Sum_probs=147.8
Q ss_pred eCccccEEEEEECcCC--CEEEEEeCCCCEEEEecccCCCC-ceeeEEEe-------cCcCcEEEEEEcCCCCCEEEEEe
Q 026765 17 TGHKKKVHSVAWNCTG--TKLASGSVDQTARVWHIEPHGHG-KVKDIELR-------GHADSVDQLCWDPKHADLIATAS 86 (233)
Q Consensus 17 ~~H~~~V~~~~~~~~~--~~l~s~~~D~~v~vW~~~~~~~~-~~~~~~~~-------~h~~~v~~~~~~~~~~~~l~sg~ 86 (233)
..|..+|+++.|..+- .-++|+|.||.|..|+++.-... .....+.. .-...+++++|.+..+..++.|.
T Consensus 288 ~sh~~~v~~vvW~~~~~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGT 367 (555)
T KOG1587|consen 288 VSHSEPVTAVVWLQNEHNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGT 367 (555)
T ss_pred ccCCcCeEEEEEeccCCCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEc
Confidence 4699999999997643 55999999999999987532110 00111111 12346889999999899999999
Q ss_pred CCCeEEEE---ECCCCe------eeeeeeecCCeeEEEECCCCCeEEEEcCCCcEEEEEcC-CCeeeeeeecCc-eeeEE
Q 026765 87 GDKTVRLW---DARSGK------CSQQAELSGENINITYKPDGTHIAVGNRDDELTILDVR-KFKPIHRRKFGY-EVNEI 155 (233)
Q Consensus 87 ~d~~i~iw---d~~~~~------~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~-~~~~~~~~~~~~-~~~~~ 155 (233)
.+|.|..= +.+... ......+.+.+.++.++|=+..++..+.|-.+++|... ...++....... .++.+
T Consensus 368 e~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~~~~~~v~~v 447 (555)
T KOG1587|consen 368 EEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLDSSPDYVTDV 447 (555)
T ss_pred CCcEEEEEeccCCcccccccccccccccccCcceEeeecCCCccceeeeeccceeEeccccCCCCcchhhhhccceeeee
Confidence 99998762 222222 01112234566778888866655544449999999976 555554444333 48999
Q ss_pred EECCCCCE-EEEEeCCCeEEEEecC--CceeeeEEeeecCceeEEEECCCCCEEEEeeCCCcEEEEecCCcE
Q 026765 156 AWNMTGEM-FFLTTGNGTVEVLTYP--SLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEML 224 (233)
Q Consensus 156 ~~~~~~~~-~~~~~~~~~v~~~~~~--~~~~~~~~~~~~~~v~~i~~~p~~~~las~s~dg~v~iwd~~~~~ 224 (233)
+|+|.... |+++..+|.+.+||+. ..+++.+...+....+.+.|+++|+.|++|...|.+.+|++.+..
T Consensus 448 aWSptrpavF~~~d~~G~l~iWDLl~~~~~Pv~s~~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~~l 519 (555)
T KOG1587|consen 448 AWSPTRPAVFATVDGDGNLDIWDLLQDDEEPVLSQKVCSPALTRVRWSPNGKLLAVGDANGTTHILKLSESL 519 (555)
T ss_pred EEcCcCceEEEEEcCCCceehhhhhccccCCcccccccccccceeecCCCCcEEEEecCCCcEEEEEcCchh
Confidence 99998765 5666779999999985 445666665566666789999999999999999999999997543
No 202
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.64 E-value=3.9e-14 Score=116.00 Aligned_cols=177 Identities=20% Similarity=0.281 Sum_probs=117.1
Q ss_pred CCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCC---CeEEEEECCCCeeeeeeeecCCeeEEEEC
Q 026765 41 DQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGD---KTVRLWDARSGKCSQQAELSGENINITYK 117 (233)
Q Consensus 41 D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d---~~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 117 (233)
+..|.+||.+... ...+..|...+....|+|++..+ +..+.+ ..|.+||+.+++........+....++|+
T Consensus 183 ~~~i~i~d~dg~~-----~~~lt~~~~~v~~p~wSPDG~~l-a~~s~~~~~~~i~i~dl~tg~~~~l~~~~g~~~~~~wS 256 (429)
T PRK01742 183 PYEVRVADYDGFN-----QFIVNRSSQPLMSPAWSPDGSKL-AYVSFENKKSQLVVHDLRSGARKVVASFRGHNGAPAFS 256 (429)
T ss_pred eEEEEEECCCCCC-----ceEeccCCCccccceEcCCCCEE-EEEEecCCCcEEEEEeCCCCceEEEecCCCccCceeEC
Confidence 5689999875422 12355677889999999997655 444432 47999999887643333334445568999
Q ss_pred CCCCeEEEEc-CCCcEEEE--EcCCCeeeeeeecCceeeEEEECCCCCEEEEEe-CCCeEEEEecCCceeeeEEeeecCc
Q 026765 118 PDGTHIAVGN-RDDELTIL--DVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTT-GNGTVEVLTYPSLRPLDTVVAHTAG 193 (233)
Q Consensus 118 ~~~~~l~~~~-~d~~i~i~--d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~ 193 (233)
|||+.|+.+. .++...+| |+.+.+..........+....|+|+|+.++..+ .++...+|+.+..........+..
T Consensus 257 PDG~~La~~~~~~g~~~Iy~~d~~~~~~~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~l~~~~- 335 (429)
T PRK01742 257 PDGSRLAFASSKDGVLNIYVMGANGGTPSQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGASLVGGRG- 335 (429)
T ss_pred CCCCEEEEEEecCCcEEEEEEECCCCCeEeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeEEecCCC-
Confidence 9999988765 57765555 655444332222334567889999999877654 577888887643211112223332
Q ss_pred eeEEEECCCCCEEEEeeCCCcEEEEecCCcEEE
Q 026765 194 CYCIAIDPMGRYFAVGSADSLVSLWDISEMLCV 226 (233)
Q Consensus 194 v~~i~~~p~~~~las~s~dg~v~iwd~~~~~~i 226 (233)
...+|+|+|++|+..+.++ +.+||+.++...
T Consensus 336 -~~~~~SpDG~~ia~~~~~~-i~~~Dl~~g~~~ 366 (429)
T PRK01742 336 -YSAQISADGKTLVMINGDN-VVKQDLTSGSTE 366 (429)
T ss_pred -CCccCCCCCCEEEEEcCCC-EEEEECCCCCeE
Confidence 4678999999998888766 555999887653
No 203
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.64 E-value=1.7e-13 Score=100.03 Aligned_cols=151 Identities=20% Similarity=0.407 Sum_probs=105.7
Q ss_pred EEEEECcCCCEEEEEeC---CC-------CEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEE-EEeCCCeEE
Q 026765 24 HSVAWNCTGTKLASGSV---DQ-------TARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIA-TASGDKTVR 92 (233)
Q Consensus 24 ~~~~~~~~~~~l~s~~~---D~-------~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~-sg~~d~~i~ 92 (233)
-.+.|+|+|+.|+.-.. |. ...+|.++... .....+++. ...+|.+++|+|++..+++ .|..++.|.
T Consensus 9 ~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~-~~~~~i~l~-~~~~I~~~~WsP~g~~favi~g~~~~~v~ 86 (194)
T PF08662_consen 9 AKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKN-IPVESIELK-KEGPIHDVAWSPNGNEFAVIYGSMPAKVT 86 (194)
T ss_pred EEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCC-Cccceeecc-CCCceEEEEECcCCCEEEEEEccCCcccE
Confidence 35789999987654322 33 35566664322 223333343 3356999999999877643 455678999
Q ss_pred EEECCCCeeeeeeeecCCeeEEEECCCCCeEEEEcCC---CcEEEEEcCCCeeeeeeecCceeeEEEECCCCCEEEEEeC
Q 026765 93 LWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRD---DELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTG 169 (233)
Q Consensus 93 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d---~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (233)
+||++ ++....+. ......+.|+|+|+++++++.+ |.+.+||+++.+.+....+. .+..+.|+|+|+++++++.
T Consensus 87 lyd~~-~~~i~~~~-~~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~~~-~~t~~~WsPdGr~~~ta~t 163 (194)
T PF08662_consen 87 LYDVK-GKKIFSFG-TQPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKISTFEHS-DATDVEWSPDGRYLATATT 163 (194)
T ss_pred EEcCc-ccEeEeec-CCCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEeeccccC-cEEEEEEcCCCCEEEEEEe
Confidence 99997 44333332 3344569999999999988754 56999999988887665554 4689999999999998864
Q ss_pred ------CCeEEEEecC
Q 026765 170 ------NGTVEVLTYP 179 (233)
Q Consensus 170 ------~~~v~~~~~~ 179 (233)
|+.++||++.
T Consensus 164 ~~r~~~dng~~Iw~~~ 179 (194)
T PF08662_consen 164 SPRLRVDNGFKIWSFQ 179 (194)
T ss_pred ccceeccccEEEEEec
Confidence 6778888874
No 204
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.63 E-value=4.1e-13 Score=109.84 Aligned_cols=208 Identities=15% Similarity=0.206 Sum_probs=135.3
Q ss_pred eeeeCccccEEEEEECcCCCEEEEEeCC---CCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCC-
Q 026765 14 REYTGHKKKVHSVAWNCTGTKLASGSVD---QTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDK- 89 (233)
Q Consensus 14 ~~~~~H~~~V~~~~~~~~~~~l~s~~~D---~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~- 89 (233)
+.+..+...+...+|+|+|++|+.++.+ ..|.+|++.... .. .+..+...+..++|+|++..++++.+.++
T Consensus 183 ~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~---~~--~~~~~~~~~~~~~~spDg~~l~~~~~~~~~ 257 (417)
T TIGR02800 183 QTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQ---RE--KVASFPGMNGAPAFSPDGSKLAVSLSKDGN 257 (417)
T ss_pred EEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCC---EE--EeecCCCCccceEECCCCCEEEEEECCCCC
Confidence 4566677789999999999999887654 478899886421 11 23345556677899999876766666554
Q ss_pred -eEEEEECCCCeeeeeeeecCCeeEEEECCCCCeEEEEcC-CC--cEEEEEcCCCeeeeeeecCceeeEEEECCCCCEEE
Q 026765 90 -TVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNR-DD--ELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFF 165 (233)
Q Consensus 90 -~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-d~--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (233)
.|.+||+.++................|+|++++|+..+. ++ .|.++|+.+.+...............|+|++++++
T Consensus 258 ~~i~~~d~~~~~~~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~~~l~~~~~~~~~~~~spdg~~i~ 337 (417)
T TIGR02800 258 PDIYVMDLDGKQLTRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEVRRLTFRGGYNASPSWSPDGDLIA 337 (417)
T ss_pred ccEEEEECCCCCEEECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCCCCccCeEECCCCCEEE
Confidence 588889887654433322233345789999998876554 33 57777876554332222334456778999999999
Q ss_pred EEeCCC---eEEEEecCCceeeeEEeeecCceeEEEECCCCCEEEEeeCCC---cEEEEecCCcEEEEee
Q 026765 166 LTTGNG---TVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADS---LVSLWDISEMLCVRTF 229 (233)
Q Consensus 166 ~~~~~~---~v~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~las~s~dg---~v~iwd~~~~~~i~~~ 229 (233)
....++ .+.+++..+... ..+.. .......+|+|++++|+..+.++ .+.+.+.. +...+.+
T Consensus 338 ~~~~~~~~~~i~~~d~~~~~~-~~l~~-~~~~~~p~~spdg~~l~~~~~~~~~~~l~~~~~~-g~~~~~~ 404 (417)
T TIGR02800 338 FVHREGGGFNIAVMDLDGGGE-RVLTD-TGLDESPSFAPNGRMILYATTRGGRGVLGLVSTD-GRFRARL 404 (417)
T ss_pred EEEccCCceEEEEEeCCCCCe-EEccC-CCCCCCceECCCCCEEEEEEeCCCcEEEEEEECC-CceeeEC
Confidence 887765 778888766432 22222 22234568999999988777654 35555544 4344433
No 205
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.62 E-value=1.5e-15 Score=118.33 Aligned_cols=199 Identities=19% Similarity=0.263 Sum_probs=156.8
Q ss_pred EEEEEECcCCCEEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeee
Q 026765 23 VHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCS 102 (233)
Q Consensus 23 V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~ 102 (233)
=+.+.++.+|.+|+-|+.-|.|..+|..+.. ...++. -...|.++.|-.+. .++ +..+.+.+.|||-. |...
T Consensus 132 PY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~----L~~Ei~-v~Etv~Dv~~LHne-q~~-AVAQK~y~yvYD~~-GtEl 203 (545)
T KOG1272|consen 132 PYHLDYTRNGRHLLLGGRKGHLAAFDWVTKK----LHFEIN-VMETVRDVTFLHNE-QFF-AVAQKKYVYVYDNN-GTEL 203 (545)
T ss_pred CeeeeecCCccEEEecCCccceeeeecccce----eeeeee-hhhhhhhhhhhcch-HHH-HhhhhceEEEecCC-CcEE
Confidence 3567889999999999999999998875421 112222 23578888887653 454 45678899999964 3434
Q ss_pred eeeeecCCeeEEEECCCCCeEEEEcCCCcEEEEEcCCCeeeeeeecC-ceeeEEEECCCCCEEEEEeCCCeEEEEecCCc
Q 026765 103 QQAELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFG-YEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSL 181 (233)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 181 (233)
+.+.....+..+.|.|---.|++++..|.++.-|+..++.+.....+ ..+..+.-+|-.-.+-+|..+|+|.+|.....
T Consensus 204 HClk~~~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~sk 283 (545)
T KOG1272|consen 204 HCLKRHIRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSK 283 (545)
T ss_pred eehhhcCchhhhcccchhheeeecccCCceEEEeechhhhhHHHHccCCccchhhcCCccceEEEcCCCceEEecCCCCc
Confidence 44444556677889998777888888999999999888877665543 35666777888888889999999999999999
Q ss_pred eeeeEEeeecCceeEEEECCCCCEEEEeeCCCcEEEEecCCcEEEEee
Q 026765 182 RPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTF 229 (233)
Q Consensus 182 ~~~~~~~~~~~~v~~i~~~p~~~~las~s~dg~v~iwd~~~~~~i~~~ 229 (233)
+++..+..|.++|.+|++.++|+|+||.+.|..++|||++.-..++++
T Consensus 284 ePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWDlR~~~ql~t~ 331 (545)
T KOG1272|consen 284 EPLVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWDLRNFYQLHTY 331 (545)
T ss_pred chHHHHHhcCCCcceEEECCCCcEEeecccccceeEeeecccccccee
Confidence 999999999999999999999999999999999999999876655543
No 206
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.62 E-value=2.8e-14 Score=121.13 Aligned_cols=195 Identities=21% Similarity=0.339 Sum_probs=137.8
Q ss_pred EEEEECcCCCEEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCee--
Q 026765 24 HSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKC-- 101 (233)
Q Consensus 24 ~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~-- 101 (233)
.-++|.....+|+++|.=+.|||||+..+. ....+ ..+-...|+++.-+...++++++|-.||.|++||.+....
T Consensus 1169 ~v~dWqQ~~G~Ll~tGd~r~IRIWDa~~E~--~~~di-P~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds 1245 (1387)
T KOG1517|consen 1169 LVVDWQQQSGHLLVTGDVRSIRIWDAHKEQ--VVADI-PYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDS 1245 (1387)
T ss_pred eeeehhhhCCeEEecCCeeEEEEEecccce--eEeec-ccCCCccceeecccccCCceEEEeecCCceEEeecccCCccc
Confidence 456777766666666667999999987522 12221 1234557888877666678999999999999999875432
Q ss_pred -eeee-eecC--CeeEEEECCCCCe-EEEEcCCCcEEEEEcCCCeeee--ee----ecCceeeEEEECCCCCEEEEEeCC
Q 026765 102 -SQQA-ELSG--ENINITYKPDGTH-IAVGNRDDELTILDVRKFKPIH--RR----KFGYEVNEIAWNMTGEMFFLTTGN 170 (233)
Q Consensus 102 -~~~~-~~~~--~~~~~~~~~~~~~-l~~~~~d~~i~i~d~~~~~~~~--~~----~~~~~~~~~~~~~~~~~~~~~~~~ 170 (233)
+... .+.. .+..+.+.+.|-. +++|+.+|.|.+||+|...... .. ..+...+++..|+....+++|+.
T Consensus 1246 ~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~- 1324 (1387)
T KOG1517|consen 1246 LVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIASGSA- 1324 (1387)
T ss_pred cceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccccceeeeccccCccceeeeeccCCCeeeecCc-
Confidence 1111 1222 2667888776654 9999999999999999842211 11 11345889999999999999988
Q ss_pred CeEEEEecCCceeeeEEe------e-ecCceeEEEECCCCCEEEEeeCCCcEEEEecCCc
Q 026765 171 GTVEVLTYPSLRPLDTVV------A-HTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEM 223 (233)
Q Consensus 171 ~~v~~~~~~~~~~~~~~~------~-~~~~v~~i~~~p~~~~las~s~dg~v~iwd~~~~ 223 (233)
+.++||+.. ++.+..+. + ....+.|++|+|...+||+|+.|.+|.||.....
T Consensus 1325 q~ikIy~~~-G~~l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs~~k~ 1383 (1387)
T KOG1517|consen 1325 QLIKIYSLS-GEQLNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSADSTVSIYSCEKP 1383 (1387)
T ss_pred ceEEEEecC-hhhhcccccCcccccCcCCCcceeeecchhHhhhhccCCceEEEeecCCc
Confidence 999999974 23222222 1 2345789999999999999999999999987654
No 207
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.62 E-value=1.2e-14 Score=109.16 Aligned_cols=188 Identities=15% Similarity=0.291 Sum_probs=122.6
Q ss_pred EEEEEECcCCCEE-EEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCee
Q 026765 23 VHSVAWNCTGTKL-ASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKC 101 (233)
Q Consensus 23 V~~~~~~~~~~~l-~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~ 101 (233)
|.-+.|..|..++ .....|+.|.+|++.... ..+ .+..-.+++..++|+|++.++|.+...|-.|.+|.+.+.++
T Consensus 51 i~yieW~ads~~ilC~~yk~~~vqvwsl~Qpe--w~c--kIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~ 126 (447)
T KOG4497|consen 51 IVYIEWKADSCHILCVAYKDPKVQVWSLVQPE--WYC--KIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKG 126 (447)
T ss_pred hhheeeeccceeeeeeeeccceEEEEEeecce--eEE--EeccCCCcceeeeECCCcceEeeeecceeEEEEEEecccee
Confidence 4445565555443 334567788888875422 222 34455678999999999999999999999999999998776
Q ss_pred eeeeeecCCeeEEEECCCCCeEEEEcCCCcEEEEEcC---CCeeeeeeec-CceeeEEEECCCCCEEEEEeCCCeEEEEe
Q 026765 102 SQQAELSGENINITYKPDGTHIAVGNRDDELTILDVR---KFKPIHRRKF-GYEVNEIAWNMTGEMFFLTTGNGTVEVLT 177 (233)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~---~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 177 (233)
...-........++|+|||++.+..+.......+.+. ........+. ....+.+.|+|||+.+++-..-=..++
T Consensus 127 ~~~~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Leykv-- 204 (447)
T KOG4497|consen 127 YLLPHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKV-- 204 (447)
T ss_pred EEecccccCceeEEECCCCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEEecchhhhee--
Confidence 5443334444668999999998877754332222211 1111111111 235678899999987765532111111
Q ss_pred cCCceeeeEEeee-cCceeEEEECCCCCEEEEeeCCCcEEEEecCCcEE
Q 026765 178 YPSLRPLDTVVAH-TAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLC 225 (233)
Q Consensus 178 ~~~~~~~~~~~~~-~~~v~~i~~~p~~~~las~s~dg~v~iwd~~~~~~ 225 (233)
+.-| +-++..++|+|.+++||.|+.|+.+||-|--+=+.
T Consensus 205 ---------~aYe~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~tWk~ 244 (447)
T KOG4497|consen 205 ---------YAYERGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWKP 244 (447)
T ss_pred ---------eeeeeccceeEEEeccccceEEeeccchhhhhhceeeeee
Confidence 1222 24678899999999999999999999977544333
No 208
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.62 E-value=2.7e-13 Score=113.02 Aligned_cols=120 Identities=20% Similarity=0.302 Sum_probs=96.1
Q ss_pred CccccEEEEEECcCCCEEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCCeEEEEECC
Q 026765 18 GHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDAR 97 (233)
Q Consensus 18 ~H~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~iwd~~ 97 (233)
.|...++|.+++|.+.++|+|..||.|.+|.-............+.-|.+.|.+++|+++|. +|+|||..+-+-+|.+.
T Consensus 203 ~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G~-~LlSGG~E~VLv~Wq~~ 281 (792)
T KOG1963|consen 203 HHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDGA-YLLSGGREGVLVLWQLE 281 (792)
T ss_pred hhcccceeEEeccccceEEEeccCCcEEEEeccccccccccceEEEecccccceeEEecCCc-eEeecccceEEEEEeec
Confidence 57888999999999999999999999999964321112223335667999999999999875 66799999999999999
Q ss_pred CCeeeeeeeecCCeeEEEECCCCCeEEEEcCCCcEEEEEcC
Q 026765 98 SGKCSQQAELSGENINITYKPDGTHIAVGNRDDELTILDVR 138 (233)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~ 138 (233)
+++....-...+.+..+.++||+...++..+|..|.+..+.
T Consensus 282 T~~kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~ 322 (792)
T KOG1963|consen 282 TGKKQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKAS 322 (792)
T ss_pred CCCcccccccCCeeEEEEEcCCCCeEEEEecCceEEEEecc
Confidence 88732222345667789999999999999999999988753
No 209
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.60 E-value=6.8e-15 Score=115.40 Aligned_cols=210 Identities=20% Similarity=0.245 Sum_probs=154.1
Q ss_pred eeeeCccccEEEEEECcCCCEEEEEeCCCCEEEEecccCCC--------------------------------Cce----
Q 026765 14 REYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGH--------------------------------GKV---- 57 (233)
Q Consensus 14 ~~~~~H~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~--------------------------------~~~---- 57 (233)
..+..|.+-|+.|.|+..|..|+|||.|..|.+||...... +.+
T Consensus 136 ~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~ 215 (559)
T KOG1334|consen 136 KKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSE 215 (559)
T ss_pred hcccCCCCccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCceeeee
Confidence 35789999999999999999999999999999998532110 000
Q ss_pred --------eeEEEecCcCcEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeeeee---c-C---CeeEEEECCCCC-
Q 026765 58 --------KDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAEL---S-G---ENINITYKPDGT- 121 (233)
Q Consensus 58 --------~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~---~-~---~~~~~~~~~~~~- 121 (233)
....+..|.++|..++..|..++-|.|++.|+.+.-.|++.+.....+.. . . ....++..|...
T Consensus 216 i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~nt~ 295 (559)
T KOG1334|consen 216 ILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPRNTN 295 (559)
T ss_pred eccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCCCcc
Confidence 01123468899999999999999999999999999999988754333221 1 1 123467777554
Q ss_pred eEEEEcCCCcEEEEEcCCCeee------eeee-------cCceeeEE---------------------------------
Q 026765 122 HIAVGNRDDELTILDVRKFKPI------HRRK-------FGYEVNEI--------------------------------- 155 (233)
Q Consensus 122 ~l~~~~~d~~i~i~d~~~~~~~------~~~~-------~~~~~~~~--------------------------------- 155 (233)
.+++++.|...++||.+..... .... ....|+++
T Consensus 296 ~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~p~~ 375 (559)
T KOG1334|consen 296 EFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDGSEPDP 375 (559)
T ss_pred ccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEecCCccceeeeecccceEEeccccccCCCCCC
Confidence 7889999988999886532111 0000 00011111
Q ss_pred -------------------------EECCCCCEEEEEeCCCeEEEEecCCceeeeEEeeecCceeEEEECCCCCEEEEee
Q 026765 156 -------------------------AWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGS 210 (233)
Q Consensus 156 -------------------------~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~las~s 210 (233)
-|.|..+++++|+.-|.|.+|+-.+.+.+..+.+...-|+|+.-+|.-..||+.+
T Consensus 376 ~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEyVvSGSDCGhIFiW~K~t~eii~~MegDr~VVNCLEpHP~~PvLAsSG 455 (559)
T KOG1334|consen 376 SSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEYVVSGSDCGHIFIWDKKTGEIIRFMEGDRHVVNCLEPHPHLPVLASSG 455 (559)
T ss_pred CcchhhccchhhcccccccccceeeeccCccceEEecCccceEEEEecchhHHHHHhhcccceEeccCCCCCCchhhccC
Confidence 2456667888999999999999988888888777666899999999999999999
Q ss_pred CCCcEEEEecCCc
Q 026765 211 ADSLVSLWDISEM 223 (233)
Q Consensus 211 ~dg~v~iwd~~~~ 223 (233)
-|.-||||-....
T Consensus 456 id~DVKIWTP~~~ 468 (559)
T KOG1334|consen 456 IDHDVKIWTPLTA 468 (559)
T ss_pred CccceeeecCCcc
Confidence 9999999987543
No 210
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.58 E-value=3.5e-12 Score=97.19 Aligned_cols=184 Identities=15% Similarity=0.278 Sum_probs=133.2
Q ss_pred CCEEEEEeCCC--CEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeeeeec-
Q 026765 32 GTKLASGSVDQ--TARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELS- 108 (233)
Q Consensus 32 ~~~l~s~~~D~--~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~- 108 (233)
..++|-.+.+. .+++.+...+ ..++.+.+ ...|.++.++.+ + |+..-.+ .|.|||+++-+...+....
T Consensus 56 SSLvaiV~~~qpr~Lkv~~~Kk~--~~ICe~~f---pt~IL~VrmNr~--R-LvV~Lee-~IyIydI~~MklLhTI~t~~ 126 (391)
T KOG2110|consen 56 SSLVAIVSIKQPRKLKVVHFKKK--TTICEIFF---PTSILAVRMNRK--R-LVVCLEE-SIYIYDIKDMKLLHTIETTP 126 (391)
T ss_pred cceeEEEecCCCceEEEEEcccC--ceEEEEec---CCceEEEEEccc--e-EEEEEcc-cEEEEecccceeehhhhccC
Confidence 44555555443 4777776532 23444433 467888888642 3 4455544 4999999988877766543
Q ss_pred -CCeeEEEECC--CCCeEEEEc--CCCcEEEEEcCCCeeeeeee-cCceeeEEEECCCCCEEEEEeCCCe-EEEEecCCc
Q 026765 109 -GENINITYKP--DGTHIAVGN--RDDELTILDVRKFKPIHRRK-FGYEVNEIAWNMTGEMFFLTTGNGT-VEVLTYPSL 181 (233)
Q Consensus 109 -~~~~~~~~~~--~~~~l~~~~--~d~~i~i~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-v~~~~~~~~ 181 (233)
.+..-++++| .+.+++.-+ ..|.+.+||+.+.+++..+. +..++.+++|+++|.+++++++.|+ |+++..+++
T Consensus 127 ~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~~v~~I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G 206 (391)
T KOG2110|consen 127 PNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTINLQPVNTINAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEG 206 (391)
T ss_pred CCccceEeeccCCCCceEEecCCCCCceEEEEEcccceeeeEEEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCc
Confidence 2222345554 455887533 35889999999888877655 5678999999999999999999886 578899999
Q ss_pred eeeeEEeeec--CceeEEEECCCCCEEEEeeCCCcEEEEecCCcE
Q 026765 182 RPLDTVVAHT--AGCYCIAIDPMGRYFAVGSADSLVSLWDISEML 224 (233)
Q Consensus 182 ~~~~~~~~~~--~~v~~i~~~p~~~~las~s~dg~v~iwd~~~~~ 224 (233)
+.+..|.-.. ..|.+++|+|++++|++.|+.++|.||.+.+..
T Consensus 207 ~kl~eFRRG~~~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL~~~~ 251 (391)
T KOG2110|consen 207 QKLYEFRRGTYPVSIYSLSFSPDSQFLAASSNTETVHIFKLEKVS 251 (391)
T ss_pred cEeeeeeCCceeeEEEEEEECCCCCeEEEecCCCeEEEEEecccc
Confidence 9888887443 457899999999999999999999999998653
No 211
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.57 E-value=6.1e-12 Score=103.34 Aligned_cols=202 Identities=13% Similarity=0.159 Sum_probs=126.7
Q ss_pred eeeeCccccEEEEEECcCCCEEEEEeCC---CCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCC-
Q 026765 14 REYTGHKKKVHSVAWNCTGTKLASGSVD---QTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDK- 89 (233)
Q Consensus 14 ~~~~~H~~~V~~~~~~~~~~~l~s~~~D---~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~- 89 (233)
+.+..|...+...+|+|||++|+..+.+ ..|.+|++.... .. .+......+....|+|++..++++...++
T Consensus 192 ~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~---~~--~l~~~~g~~~~~~~SpDG~~la~~~~~~g~ 266 (430)
T PRK00178 192 VTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGR---RE--QITNFEGLNGAPAWSPDGSKLAFVLSKDGN 266 (430)
T ss_pred eEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCC---EE--EccCCCCCcCCeEECCCCCEEEEEEccCCC
Confidence 4556677889999999999999877644 247777775422 11 22223334556899999877766666665
Q ss_pred -eEEEEECCCCeeeeeeeecCCeeEEEECCCCCeEEEEcC-CC--cEEEEEcCCCeeeeeeecCceeeEEEECCCCCEEE
Q 026765 90 -TVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNR-DD--ELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFF 165 (233)
Q Consensus 90 -~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-d~--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (233)
.|.+||+.++................|+||++.++..+. ++ .|.++|+.+.+.......+.......|+|+|+.++
T Consensus 267 ~~Iy~~d~~~~~~~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt~~~~~~~~~~~Spdg~~i~ 346 (430)
T PRK00178 267 PEIYVMDLASRQLSRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAERVTFVGNYNARPRLSADGKTLV 346 (430)
T ss_pred ceEEEEECCCCCeEEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecCCCCccceEECCCCCEEE
Confidence 577889988765432222233445789999998875543 33 46667776554322111122234568999999998
Q ss_pred EEeCC-C--eEEEEecCCceeeeEEeeecCceeEEEECCCCCEEEEeeCC---CcEEEEecCC
Q 026765 166 LTTGN-G--TVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSAD---SLVSLWDISE 222 (233)
Q Consensus 166 ~~~~~-~--~v~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~las~s~d---g~v~iwd~~~ 222 (233)
..... + .+.++|+.+++. ..+. +........|+|+|++++..+.+ ..+.+.+++.
T Consensus 347 ~~~~~~~~~~l~~~dl~tg~~-~~lt-~~~~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~g 407 (430)
T PRK00178 347 MVHRQDGNFHVAAQDLQRGSV-RILT-DTSLDESPSVAPNGTMLIYATRQQGRGVLMLVSING 407 (430)
T ss_pred EEEccCCceEEEEEECCCCCE-EEcc-CCCCCCCceECCCCCEEEEEEecCCceEEEEEECCC
Confidence 77643 3 467778766543 2222 22222356899999998776654 3467777753
No 212
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.56 E-value=7.4e-13 Score=100.76 Aligned_cols=202 Identities=18% Similarity=0.336 Sum_probs=132.1
Q ss_pred ccccEEEEEECcCC-CEEEEEeCCCCEEEEecccCCC----------CceeeEEEecCcCcEEEEEEcCCCCCEEEEEeC
Q 026765 19 HKKKVHSVAWNCTG-TKLASGSVDQTARVWHIEPHGH----------GKVKDIELRGHADSVDQLCWDPKHADLIATASG 87 (233)
Q Consensus 19 H~~~V~~~~~~~~~-~~l~s~~~D~~v~vW~~~~~~~----------~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~ 87 (233)
....|+|++|-|-+ +.|+.|+. +-|.+|..+.... ......+.+|| .+|+++.|++++.. +++++.
T Consensus 139 sQrnvtclawRPlsaselavgCr-~gIciW~~s~tln~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~-l~tAS~ 215 (445)
T KOG2139|consen 139 SQRNVTCLAWRPLSASELAVGCR-AGICIWSDSRTLNANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTI-LVTASF 215 (445)
T ss_pred hhcceeEEEeccCCcceeeeeec-ceeEEEEcCcccccccccccccccchhheeCCCC-ceeeEEEEcCCCCE-Eeeccc
Confidence 46789999999965 56666664 6688998754221 11222345666 78999999998754 556554
Q ss_pred -CCeEEEEECCCCeeeeeeeec-CCeeEEEECCCCCeEEEEcCCCcEEEEEcCC-CeeeeeeecCceeeEEEECCCCCEE
Q 026765 88 -DKTVRLWDARSGKCSQQAELS-GENINITYKPDGTHIAVGNRDDELTILDVRK-FKPIHRRKFGYEVNEIAWNMTGEMF 164 (233)
Q Consensus 88 -d~~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (233)
|..|.|||..++.+....... +....+.|+||+.+++++.-|+..++|.... .....-......+....|+|.|.++
T Consensus 216 gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd~lfaAt~davfrlw~e~q~wt~erw~lgsgrvqtacWspcGsfL 295 (445)
T KOG2139|consen 216 GSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGDVLFAATCDAVFRLWQENQSWTKERWILGSGRVQTACWSPCGSFL 295 (445)
T ss_pred CcceEEEEcCCCCCcccccccCCCceeeEEEcCCCCEEEEecccceeeeehhcccceecceeccCCceeeeeecCCCCEE
Confidence 668999999998765544333 3344689999999999999999999996432 2221111223378889999999988
Q ss_pred EEEeC-CCeEEEEecCC--ce-----eeeE------E------ee---ecCceeEEEECCCCCEEEEeeCCC--------
Q 026765 165 FLTTG-NGTVEVLTYPS--LR-----PLDT------V------VA---HTAGCYCIAIDPMGRYFAVGSADS-------- 213 (233)
Q Consensus 165 ~~~~~-~~~v~~~~~~~--~~-----~~~~------~------~~---~~~~v~~i~~~p~~~~las~s~dg-------- 213 (233)
+..+. ...++-..+.. .. .++. + .+ -.+++.+++|+|.|.+||+--..+
T Consensus 296 Lf~~sgsp~lysl~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~~~v~~~k~ 375 (445)
T KOG2139|consen 296 LFACSGSPRLYSLTFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQSFVLLCKL 375 (445)
T ss_pred EEEEcCCceEEEEeecCCCccccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEcCCchhhhhhh
Confidence 76643 33333333221 10 0000 0 00 145678999999999999865443
Q ss_pred cEEEEecCCc
Q 026765 214 LVSLWDISEM 223 (233)
Q Consensus 214 ~v~iwd~~~~ 223 (233)
.|.+||....
T Consensus 376 ~i~~fdtr~s 385 (445)
T KOG2139|consen 376 HISRFDTRKS 385 (445)
T ss_pred hhhhhccccc
Confidence 3667776643
No 213
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.56 E-value=1.1e-12 Score=109.51 Aligned_cols=205 Identities=13% Similarity=0.209 Sum_probs=153.0
Q ss_pred EEEEECcCCCEEEEEeCCCCEEEEecccCCCCceee-EEEecCcCcEEEEEEcCCCCCEEEEEeCCCeEEEEECCC--C-
Q 026765 24 HSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKD-IELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARS--G- 99 (233)
Q Consensus 24 ~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~~~~~-~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~iwd~~~--~- 99 (233)
.++.+++.|...+. -.+..+.+|.+..+. ..... ..-..|.-.+++.+++|.+ .++++|..||+|.+|.--. .
T Consensus 164 ~~I~~~~~ge~~~i-~~~~~~~~~~v~~~~-~~~~~~~~~~~Htf~~t~~~~spn~-~~~Aa~d~dGrI~vw~d~~~~~~ 240 (792)
T KOG1963|consen 164 KSIVDNNSGEFKGI-VHMCKIHIYFVPKHT-KHTSSRDITVHHTFNITCVALSPNE-RYLAAGDSDGRILVWRDFGSSDD 240 (792)
T ss_pred ccEEEcCCceEEEE-EEeeeEEEEEecccc-eeeccchhhhhhcccceeEEecccc-ceEEEeccCCcEEEEeccccccc
Confidence 46677777765544 346778888876533 11111 1112466778999999975 6889999999999995322 1
Q ss_pred --eeeeeeeecCCeeEEEECCCCCeEEEEcCCCcEEEEEcCCCeeeeeeecCceeeEEEECCCCCEEEEEeCCCeEEEEe
Q 026765 100 --KCSQQAELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNGTVEVLT 177 (233)
Q Consensus 100 --~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 177 (233)
.+....-++.++.+++|+++|.+|++|+..+-+.+|.+++.++...-..+.++..+.++|++.+.++..+|+.+.+..
T Consensus 241 ~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~ 320 (792)
T KOG1963|consen 241 SETCTLLHWHHDEVNSLSFSSDGAYLLSGGREGVLVLWQLETGKKQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIK 320 (792)
T ss_pred cccceEEEecccccceeEEecCCceEeecccceEEEEEeecCCCcccccccCCeeEEEEEcCCCCeEEEEecCceEEEEe
Confidence 122222345678899999999999999999999999999887554455678999999999999999999999999998
Q ss_pred cCCceeeeEEeee-----------cCceeEEEECCCCCEEEEeeCCCcEEEEecCCcEEEEeeec
Q 026765 178 YPSLRPLDTVVAH-----------TAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTK 231 (233)
Q Consensus 178 ~~~~~~~~~~~~~-----------~~~v~~i~~~p~~~~las~s~dg~v~iwd~~~~~~i~~~~~ 231 (233)
..+.+...++.+- .+-.+.++++|.-+.++-.+..|.|.+||+-+.+-++.|+.
T Consensus 321 ~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~~~vln~~~g~vQ~ydl~td~~i~~~~v 385 (792)
T KOG1963|consen 321 ASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTNSLVLNGHPGHVQFYDLYTDSTIYKLQV 385 (792)
T ss_pred ccchhhhhhccCccCCCccccccccccceeEEEcCCCCceeecCCCceEEEEeccccceeeeEEE
Confidence 8666544433321 22245688999778889999999999999998888887754
No 214
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.56 E-value=9.3e-14 Score=107.14 Aligned_cols=160 Identities=16% Similarity=0.291 Sum_probs=113.1
Q ss_pred EEEEEcCCCCCEEEEEeCCCeEEEEECCCCee-eeeeeecCCeeEEEECCCCCeEEEEcCCCcEEEEEcCCCeeeeeee-
Q 026765 70 DQLCWDPKHADLIATASGDKTVRLWDARSGKC-SQQAELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRK- 147 (233)
Q Consensus 70 ~~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~- 147 (233)
..++|++++ ..+++|+.||++|||+...-.. ......++++.++.|+|||+.|++.+.| ...||+.+++..+....
T Consensus 148 k~vaf~~~g-s~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dgk~lasig~d-~~~VW~~~~g~~~a~~t~ 225 (398)
T KOG0771|consen 148 KVVAFNGDG-SKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDGKFLASIGAD-SARVWSVNTGAALARKTP 225 (398)
T ss_pred eEEEEcCCC-CEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCCcEEEEecCC-ceEEEEeccCchhhhcCC
Confidence 467888875 4789999999999999654332 2333456778889999999999999999 89999998875443322
Q ss_pred c--CceeeEEEECCCC---CEEEE--EeCCCeEEEEecCCce-----eeeEEeeecCceeEEEECCCCCEEEEeeCCCcE
Q 026765 148 F--GYEVNEIAWNMTG---EMFFL--TTGNGTVEVLTYPSLR-----PLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLV 215 (233)
Q Consensus 148 ~--~~~~~~~~~~~~~---~~~~~--~~~~~~v~~~~~~~~~-----~~~~~~~~~~~v~~i~~~p~~~~las~s~dg~v 215 (233)
. ......+.|..++ .+.+. ....+.+..++..... ...+.....+.|.+++.+++|+++|.|+.||.|
T Consensus 226 ~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dGsV 305 (398)
T KOG0771|consen 226 FSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMDGSV 305 (398)
T ss_pred cccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeeccccccchhhhhhccCcceeEEEcCCCcEEEEeccCCcE
Confidence 1 1223455666555 33333 2344566665543211 122223344578999999999999999999999
Q ss_pred EEEecCCcEEEEeeec
Q 026765 216 SLWDISEMLCVRTFTK 231 (233)
Q Consensus 216 ~iwd~~~~~~i~~~~~ 231 (233)
-|++..++++++-+++
T Consensus 306 ai~~~~~lq~~~~vk~ 321 (398)
T KOG0771|consen 306 AIYDAKSLQRLQYVKE 321 (398)
T ss_pred EEEEeceeeeeEeehh
Confidence 9999999998886654
No 215
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.55 E-value=3.9e-13 Score=109.03 Aligned_cols=210 Identities=18% Similarity=0.297 Sum_probs=142.5
Q ss_pred eeeeCccccEEEEEECcCC-CEEEEEeCCCCEEEEecccCCCCce--eeEEEecCcCcEEEEEEcCCCCCEEEEEeCCCe
Q 026765 14 REYTGHKKKVHSVAWNCTG-TKLASGSVDQTARVWHIEPHGHGKV--KDIELRGHADSVDQLCWDPKHADLIATASGDKT 90 (233)
Q Consensus 14 ~~~~~H~~~V~~~~~~~~~-~~l~s~~~D~~v~vW~~~~~~~~~~--~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~ 90 (233)
..+.+|...|+.+.|+|.. .+|||||.|..||||.+...-...+ ..+.+.+....|-++.|+|....+++++ .-|.
T Consensus 73 ~~l~~H~d~VtDl~FspF~D~LLAT~S~D~~VKiW~lp~g~~q~LSape~~~g~~~~~vE~l~fHpTaDgil~s~-a~g~ 151 (1012)
T KOG1445|consen 73 GILAAHGDQVTDLGFSPFADELLATCSRDEPVKIWKLPRGHSQKLSAPEIDVGGGNVIVECLRFHPTADGILASG-AHGS 151 (1012)
T ss_pred ceeecccceeeccCccccchhhhhcccCCCeeEEEecCCCcccccCCcceeecCCceEEEEeecccCcCceEEec-cCce
Confidence 4577999999999999965 5789999999999999863211111 1223333345688999999877777665 5689
Q ss_pred EEEEECCCCeeeeeeeec-CCeeEEEECCCCCeEEEEcCCCcEEEEEcCC-Ceeeeeeec--CceeeEEEECCCCCEEEE
Q 026765 91 VRLWDARSGKCSQQAELS-GENINITYKPDGTHIAVGNRDDELTILDVRK-FKPIHRRKF--GYEVNEIAWNMTGEMFFL 166 (233)
Q Consensus 91 i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~-~~~~~~~~~--~~~~~~~~~~~~~~~~~~ 166 (233)
+.|||+.+++....+..+ ..+.+..|+.||..+++.+.|+.|+|||.+. .++++..+. +..-..+.|--+-..+++
T Consensus 152 v~i~D~stqk~~~el~~h~d~vQSa~WseDG~llatscKdkqirifDPRa~~~piQ~te~H~~~rdsRv~w~Gn~~rlis 231 (1012)
T KOG1445|consen 152 VYITDISTQKTAVELSGHTDKVQSADWSEDGKLLATSCKDKQIRIFDPRASMEPIQTTEGHGGMRDSRVLWAGNWERLIS 231 (1012)
T ss_pred EEEEEcccCceeecccCCchhhhccccccCCceEeeecCCcceEEeCCccCCCccccccccccchhheeeeccchhhhhh
Confidence 999999998876655544 3456789999999999999999999999875 444444322 122334555443334444
Q ss_pred EeC----CCeEEEEecCCc-eeeeEEeee-cCceeEEEECCCCCEEE-EeeCCCcEEEEecCCcE
Q 026765 167 TTG----NGTVEVLTYPSL-RPLDTVVAH-TAGCYCIAIDPMGRYFA-VGSADSLVSLWDISEML 224 (233)
Q Consensus 167 ~~~----~~~v~~~~~~~~-~~~~~~~~~-~~~v~~i~~~p~~~~la-s~s~dg~v~iwd~~~~~ 224 (233)
.+- -..+++||.+.. .+..++.-. ..+|.-=-|+||.++|. +|-.+.++..+.+.+..
T Consensus 232 TGF~~~R~reV~~~Dtr~f~~p~~tleld~stGvLiPl~DpDt~llfLaGKG~~~l~~lE~~d~q 296 (1012)
T KOG1445|consen 232 TGFTTKRIREVRAYDTRKFGAPVHTLELDSSTGVLIPLYDPDTRLLFLAGKGTNKLFMLEMQDRQ 296 (1012)
T ss_pred cccchhhheeeeeeeccccCCcceeEEeecccceEeeeecCCCceEEEecCCcceEEEEEecCCC
Confidence 332 367889987643 344444322 22344445889988765 45567888888887654
No 216
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.54 E-value=5.7e-12 Score=94.37 Aligned_cols=201 Identities=16% Similarity=0.289 Sum_probs=133.9
Q ss_pred cEEEEEECcCCCEEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCC------CeEEEEE
Q 026765 22 KVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGD------KTVRLWD 95 (233)
Q Consensus 22 ~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d------~~i~iwd 95 (233)
....++|+.|...++.|- |.-.|||+.++...... .++....-.+..+-|- ...+.+.||.+ ..+.|||
T Consensus 7 ~~lsvs~NQD~ScFava~-~~Gfriyn~~P~ke~~~--r~~~~~G~~~veMLfR--~N~laLVGGg~~pky~pNkviIWD 81 (346)
T KOG2111|consen 7 KTLSVSFNQDHSCFAVAT-DTGFRIYNCDPFKESAS--RQFIDGGFKIVEMLFR--SNYLALVGGGSRPKYPPNKVIIWD 81 (346)
T ss_pred ceeEEEEccCCceEEEEe-cCceEEEecCchhhhhh--hccccCchhhhhHhhh--hceEEEecCCCCCCCCCceEEEEe
Confidence 445599999999887766 55579999876322111 1111111222233332 12333455544 5789999
Q ss_pred CCCCeeeeeeeecCCeeEEEECCCCCeEEEEcCCCcEEEEEcC-CCeeeeeeecCc---eeeEEEECCCCCEEEEE-eCC
Q 026765 96 ARSGKCSQQAELSGENINITYKPDGTHIAVGNRDDELTILDVR-KFKPIHRRKFGY---EVNEIAWNMTGEMFFLT-TGN 170 (233)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~-~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~-~~~ 170 (233)
=...+++.++.+..++.++.+.++ .|++.. .++|.+|... +.+.++...... ...+++-+.+...++.. -.-
T Consensus 82 D~k~~~i~el~f~~~I~~V~l~r~--riVvvl-~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~~~k~~LafPg~k~ 158 (346)
T KOG2111|consen 82 DLKERCIIELSFNSEIKAVKLRRD--RIVVVL-ENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPTSNKSLLAFPGFKT 158 (346)
T ss_pred cccCcEEEEEEeccceeeEEEcCC--eEEEEe-cCeEEEEEcCCChhheeeeecccCCCceEeecCCCCceEEEcCCCcc
Confidence 777788888889999999998876 555444 4578999865 444444433221 22233323333334443 346
Q ss_pred CeEEEEecCCcee--eeEEeeecCceeEEEECCCCCEEEEeeCCCc-EEEEecCCcEEEEeee
Q 026765 171 GTVEVLTYPSLRP--LDTVVAHTAGCYCIAIDPMGRYFAVGSADSL-VSLWDISEMLCVRTFT 230 (233)
Q Consensus 171 ~~v~~~~~~~~~~--~~~~~~~~~~v~~i~~~p~~~~las~s~dg~-v~iwd~~~~~~i~~~~ 230 (233)
|.+++.|+...+. -..+.+|.+.|.|++++.+|..+||+|..|+ |||||..+|+.+++|.
T Consensus 159 GqvQi~dL~~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~R 221 (346)
T KOG2111|consen 159 GQVQIVDLASTKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELR 221 (346)
T ss_pred ceEEEEEhhhcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeee
Confidence 9999999865444 3567899999999999999999999999988 8999999999999875
No 217
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.54 E-value=5.9e-13 Score=99.66 Aligned_cols=197 Identities=15% Similarity=0.239 Sum_probs=137.4
Q ss_pred ceeeeCccccEEEEEECcCCCEEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCCeEE
Q 026765 13 SREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVR 92 (233)
Q Consensus 13 ~~~~~~H~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~ 92 (233)
..++..|...|+.|+|+|..+.|+||+.|+.-.||...... .......+..+..+++++.|+|.. +.+++|+.-+.|.
T Consensus 48 ~htls~Hd~~vtgvdWap~snrIvtcs~drnayVw~~~~~~-~WkptlvLlRiNrAAt~V~WsP~e-nkFAVgSgar~is 125 (361)
T KOG1523|consen 48 AHTLSEHDKIVTGVDWAPKSNRIVTCSHDRNAYVWTQPSGG-TWKPTLVLLRINRAATCVKWSPKE-NKFAVGSGARLIS 125 (361)
T ss_pred ceehhhhCcceeEEeecCCCCceeEccCCCCccccccCCCC-eeccceeEEEeccceeeEeecCcC-ceEEeccCccEEE
Confidence 45888999999999999999999999999999999874322 233445677789999999999985 6788999999999
Q ss_pred EEECCCCee--ee---eeeecCCeeEEEECCCCCeEEEEcCCCcEEEEEc-----CC-C------------eeeeee-ec
Q 026765 93 LWDARSGKC--SQ---QAELSGENINITYKPDGTHIAVGNRDDELTILDV-----RK-F------------KPIHRR-KF 148 (233)
Q Consensus 93 iwd~~~~~~--~~---~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~-----~~-~------------~~~~~~-~~ 148 (233)
||-.+...- +. .......+.++.|+|++-.++.|+-|++.+++.. +. . +..... ..
T Consensus 126 Vcy~E~ENdWWVsKhikkPirStv~sldWhpnnVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ 205 (361)
T KOG1523|consen 126 VCYYEQENDWWVSKHIKKPIRSTVTSLDWHPNNVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSS 205 (361)
T ss_pred EEEEecccceehhhhhCCccccceeeeeccCCcceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccC
Confidence 987654321 00 1112234578999999999999999999999863 10 0 001111 11
Q ss_pred CceeeEEEECCCCCEEEEEeCCCeEEEEecCCce-eeeEEeeecCceeEEEECCCCCEEEEeeCC
Q 026765 149 GYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLR-PLDTVVAHTAGCYCIAIDPMGRYFAVGSAD 212 (233)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~~~~~v~~i~~~p~~~~las~s~d 212 (233)
+.-+..+.|+++|+.++-.+.|..+.+-|....+ .......-.-+-.++.|-.. +.++.++.|
T Consensus 206 ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p~~~v~~~~~~~lP~ls~~~ise-~~vv~ag~~ 269 (361)
T KOG1523|consen 206 GGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGPSERVQSVATAQLPLLSVSWISE-NSVVAAGYD 269 (361)
T ss_pred CCceeeeEeCCCCCEeeEecCCCceEEeecCCCchhccchhhccCCceeeEeecC-CceeecCCC
Confidence 2347789999999999999999999999875443 22222222244455555432 334444444
No 218
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.54 E-value=7.7e-12 Score=102.90 Aligned_cols=207 Identities=13% Similarity=0.093 Sum_probs=123.3
Q ss_pred eeeCccccEEEEEECcCCCEEEEEeC-CCC--EEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCCe-
Q 026765 15 EYTGHKKKVHSVAWNCTGTKLASGSV-DQT--ARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKT- 90 (233)
Q Consensus 15 ~~~~H~~~V~~~~~~~~~~~l~s~~~-D~~--v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~- 90 (233)
.+..+...+.+..|+|||++|+..+. ++. |.+||+.... .. .+..........+|+|++..++++.+.++.
T Consensus 212 ~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~---~~--~lt~~~g~~~~~~wSPDG~~La~~~~~~g~~ 286 (448)
T PRK04792 212 MLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQV---RE--KVTSFPGINGAPRFSPDGKKLALVLSKDGQP 286 (448)
T ss_pred EeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCC---eE--EecCCCCCcCCeeECCCCCEEEEEEeCCCCe
Confidence 34445667789999999999887654 444 5566664321 11 122222334567999998777777777775
Q ss_pred -EEEEECCCCeeeeeeeecCCeeEEEECCCCCeEEEEcC-CC--cEEEEEcCCCeeeeeeecCceeeEEEECCCCCEEEE
Q 026765 91 -VRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNR-DD--ELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFL 166 (233)
Q Consensus 91 -i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-d~--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (233)
|.++|+.+++...............|+||+++++..+. ++ .+.++|+.+.+.......+.......|+|+|+.++.
T Consensus 287 ~Iy~~dl~tg~~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~Lt~~g~~~~~~~~SpDG~~l~~ 366 (448)
T PRK04792 287 EIYVVDIATKALTRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSRLTFEGEQNLGGSITPDGRSMIM 366 (448)
T ss_pred EEEEEECCCCCeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEEecCCCCCcCeeECCCCCEEEE
Confidence 66778877664433222233456889999998876543 33 466667765543221112222345689999999877
Q ss_pred EeC-CC--eEEEEecCCceeeeEEeeecCceeEEEECCCCCEEEEeeCC-Cc--EEEEecCCcEEEEee
Q 026765 167 TTG-NG--TVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSAD-SL--VSLWDISEMLCVRTF 229 (233)
Q Consensus 167 ~~~-~~--~v~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~las~s~d-g~--v~iwd~~~~~~i~~~ 229 (233)
... ++ .+.+++..+++.. .+... ......+|+|+|++|+..+.+ +. +.+++++ +...+.+
T Consensus 367 ~~~~~g~~~I~~~dl~~g~~~-~lt~~-~~d~~ps~spdG~~I~~~~~~~g~~~l~~~~~~-G~~~~~l 432 (448)
T PRK04792 367 VNRTNGKFNIARQDLETGAMQ-VLTST-RLDESPSVAPNGTMVIYSTTYQGKQVLAAVSID-GRFKARL 432 (448)
T ss_pred EEecCCceEEEEEECCCCCeE-EccCC-CCCCCceECCCCCEEEEEEecCCceEEEEEECC-CCceEEC
Confidence 654 34 4455666655432 22221 112245799999988765543 33 6777764 4444443
No 219
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.54 E-value=1.9e-14 Score=119.49 Aligned_cols=205 Identities=18% Similarity=0.242 Sum_probs=141.0
Q ss_pred eeeeCccccEEEEEECcCCCEEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCCeEEE
Q 026765 14 REYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRL 93 (233)
Q Consensus 14 ~~~~~H~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~i 93 (233)
....||.+.|+.++.+..+.+++++|.|+.|++|.+.... ....+.||+++|++++|+|. .+.+.||++++
T Consensus 226 As~rGhs~ditdlavs~~n~~iaaaS~D~vIrvWrl~~~~----pvsvLrghtgavtaiafsP~-----~sss~dgt~~~ 296 (1113)
T KOG0644|consen 226 ASCRGHSGDITDLAVSSNNTMIAAASNDKVIRVWRLPDGA----PVSVLRGHTGAVTAIAFSPR-----ASSSDDGTCRI 296 (1113)
T ss_pred ccCCCCccccchhccchhhhhhhhcccCceEEEEecCCCc----hHHHHhccccceeeeccCcc-----ccCCCCCceEe
Confidence 4567999999999999999999999999999999986432 12247899999999999995 27789999999
Q ss_pred EECC-CCeee--ee--eeecCCeeEEEECCCCCeEE-------------------------------------EEcCCCc
Q 026765 94 WDAR-SGKCS--QQ--AELSGENINITYKPDGTHIA-------------------------------------VGNRDDE 131 (233)
Q Consensus 94 wd~~-~~~~~--~~--~~~~~~~~~~~~~~~~~~l~-------------------------------------~~~~d~~ 131 (233)
||.+ ....- .. +........+.|...+..++ +.-.+-.
T Consensus 297 wd~r~~~~~y~prp~~~~~~~~~~s~~~~~~~~~f~Tgs~d~ea~n~e~~~l~~~~~~lif~t~ssd~~~~~~~ar~~~~ 376 (1113)
T KOG0644|consen 297 WDARLEPRIYVPRPLKFTEKDLVDSILFENNGDRFLTGSRDGEARNHEFEQLAWRSNLLIFVTRSSDLSSIVVTARNDHR 376 (1113)
T ss_pred ccccccccccCCCCCCcccccceeeeeccccccccccccCCcccccchhhHhhhhccceEEEeccccccccceeeeeeeE
Confidence 9987 11100 00 00001111112222222222 2223344
Q ss_pred EEEEEcCCCeeeeee-ecCceeeEEEECCCCCEEE-EEeCCCeEEEEecCCceeeeEEeeecCceeEEEECCCCCEEEEe
Q 026765 132 LTILDVRKFKPIHRR-KFGYEVNEIAWNMTGEMFF-LTTGNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVG 209 (233)
Q Consensus 132 i~i~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~las~ 209 (233)
+++|++..+...+.. -+..++..+.+||-...++ .++.||...|||.-.+.+++.+......+..-+||++|+.++..
T Consensus 377 ~~vwnl~~g~l~H~l~ghsd~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~pik~y~~gh~kl~d~kFSqdgts~~ls 456 (1113)
T KOG0644|consen 377 LCVWNLYTGQLLHNLMGHSDEVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIPIKHYFIGHGKLVDGKFSQDGTSIALS 456 (1113)
T ss_pred eeeeecccchhhhhhcccccceeeeeecCCCcHhhhhccCCCceEeeecccCCcceeeecccceeeccccCCCCceEecC
Confidence 566666665555442 2345677788888766554 56789999999998887776654334456677999999999998
Q ss_pred eCCCcEEEEecCCcEEEE
Q 026765 210 SADSLVSLWDISEMLCVR 227 (233)
Q Consensus 210 s~dg~v~iwd~~~~~~i~ 227 (233)
..-|.+.|....+++.++
T Consensus 457 d~hgql~i~g~gqs~s~k 474 (1113)
T KOG0644|consen 457 DDHGQLYILGTGQSKSQK 474 (1113)
T ss_pred CCCCceEEeccCCCcccc
Confidence 888999999988776543
No 220
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.53 E-value=1.8e-12 Score=98.72 Aligned_cols=183 Identities=15% Similarity=0.250 Sum_probs=130.5
Q ss_pred cccEEEEEECcCCCEEEEEeCCCCEEEEecccCCCCceeeEEEe-cCcCcEEEEEEcCCCCCEEEEEeCCCeEEEEECCC
Q 026765 20 KKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELR-GHADSVDQLCWDPKHADLIATASGDKTVRLWDARS 98 (233)
Q Consensus 20 ~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~-~h~~~v~~~~~~~~~~~~l~sg~~d~~i~iwd~~~ 98 (233)
+-.+..++|++.=..+|++..|-+||+|+-+.... . .++ .....|.+++|-|.+...|+.|+.. -|.+|....
T Consensus 98 ~~dlr~~aWhqH~~~fava~nddvVriy~ksst~p---t--~Lks~sQrnvtclawRPlsaselavgCr~-gIciW~~s~ 171 (445)
T KOG2139|consen 98 EIDLRGVAWHQHIIAFAVATNDDVVRIYDKSSTCP---T--KLKSVSQRNVTCLAWRPLSASELAVGCRA-GICIWSDSR 171 (445)
T ss_pred hcceeeEeechhhhhhhhhccCcEEEEeccCCCCC---c--eecchhhcceeEEEeccCCcceeeeeecc-eeEEEEcCc
Confidence 34577889999777889999999999998654211 1 222 2346799999999988888777765 488997642
Q ss_pred C----e--------eeeeeee--cCCeeEEEECCCCCeEEEEcC-CCcEEEEEcCCCeeeeeeec-CceeeEEEECCCCC
Q 026765 99 G----K--------CSQQAEL--SGENINITYKPDGTHIAVGNR-DDELTILDVRKFKPIHRRKF-GYEVNEIAWNMTGE 162 (233)
Q Consensus 99 ~----~--------~~~~~~~--~~~~~~~~~~~~~~~l~~~~~-d~~i~i~d~~~~~~~~~~~~-~~~~~~~~~~~~~~ 162 (233)
. + +.+.+.. +..+..++|.+||..+++++. |..|.|||..+...+..... ...+.-+.|+||+.
T Consensus 172 tln~~r~~~~~s~~~~qvl~~pgh~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~glgg~slLkwSPdgd 251 (445)
T KOG2139|consen 172 TLNANRNIRMMSTHHLQVLQDPGHNPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPLIPKGLGGFSLLKWSPDGD 251 (445)
T ss_pred ccccccccccccccchhheeCCCCceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccccccCCCceeeEEEcCCCC
Confidence 2 1 0111111 234567999999999998875 46799999988766554432 34577899999999
Q ss_pred EEEEEeCCCeEEEEecC-CceeeeEEeeecCceeEEEECCCCCEEEEe
Q 026765 163 MFFLTTGNGTVEVLTYP-SLRPLDTVVAHTAGCYCIAIDPMGRYFAVG 209 (233)
Q Consensus 163 ~~~~~~~~~~v~~~~~~-~~~~~~~~~~~~~~v~~i~~~p~~~~las~ 209 (233)
.+.++.-|+..++|+.. +....+...+ .+.|....|+|+|++|.-.
T Consensus 252 ~lfaAt~davfrlw~e~q~wt~erw~lg-sgrvqtacWspcGsfLLf~ 298 (445)
T KOG2139|consen 252 VLFAATCDAVFRLWQENQSWTKERWILG-SGRVQTACWSPCGSFLLFA 298 (445)
T ss_pred EEEEecccceeeeehhcccceecceecc-CCceeeeeecCCCCEEEEE
Confidence 99999999999999653 3333333333 3488899999999876543
No 221
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.52 E-value=1.9e-12 Score=99.70 Aligned_cols=197 Identities=17% Similarity=0.210 Sum_probs=138.8
Q ss_pred CccccEEEEEECcCCCEEEEEeCCCCEEEEecccCCCCceeeEEEecCcC---cEEEEEEcCCCCCEEEEEeCCCeEEEE
Q 026765 18 GHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHAD---SVDQLCWDPKHADLIATASGDKTVRLW 94 (233)
Q Consensus 18 ~H~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~---~v~~~~~~~~~~~~l~sg~~d~~i~iw 94 (233)
.|...|.|++|+..+..+.||+.+++|...|+++.. .+....|.+ .|+.+.-+|.+ +.+++.+.++.|.+|
T Consensus 103 ~H~SNIF~L~F~~~N~~~~SG~~~~~VI~HDiEt~q-----si~V~~~~~~~~~VY~m~~~P~D-N~~~~~t~~~~V~~~ 176 (609)
T KOG4227|consen 103 PHRSNIFSLEFDLENRFLYSGERWGTVIKHDIETKQ-----SIYVANENNNRGDVYHMDQHPTD-NTLIVVTRAKLVSFI 176 (609)
T ss_pred ccccceEEEEEccCCeeEecCCCcceeEeeecccce-----eeeeecccCcccceeecccCCCC-ceEEEEecCceEEEE
Confidence 467899999999999999999999999999997532 122334544 89999999985 678899999999999
Q ss_pred ECCCCeeee----eeeecCCeeEEEECCC-CCeEEEEcCCCcEEEEEcCCCee-eeeeec-------CceeeEEEECCCC
Q 026765 95 DARSGKCSQ----QAELSGENINITYKPD-GTHIAVGNRDDELTILDVRKFKP-IHRRKF-------GYEVNEIAWNMTG 161 (233)
Q Consensus 95 d~~~~~~~~----~~~~~~~~~~~~~~~~-~~~l~~~~~d~~i~i~d~~~~~~-~~~~~~-------~~~~~~~~~~~~~ 161 (233)
|.+..+... ..........+.|+|. ...|++....+.+.+||.+.... +.++.. ..+...+.|+++|
T Consensus 177 D~Rd~~~~~~~~~~AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~~~G 256 (609)
T KOG4227|consen 177 DNRDRQNPISLVLPANSGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWSPSG 256 (609)
T ss_pred eccCCCCCCceeeecCCCccceeeeecCCCceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeCCCC
Confidence 998765221 1122334456888885 45677888889999999876432 211111 1234678999999
Q ss_pred CEEEEEeCCCeEEEEecCCcee-eeEEeeecC-------ceeEEEECCCCCEEEEeeCCCcEEEEecCC
Q 026765 162 EMFFLTTGNGTVEVLTYPSLRP-LDTVVAHTA-------GCYCIAIDPMGRYFAVGSADSLVSLWDISE 222 (233)
Q Consensus 162 ~~~~~~~~~~~v~~~~~~~~~~-~~~~~~~~~-------~v~~i~~~p~~~~las~s~dg~v~iwd~~~ 222 (233)
+.+++.-....-.+||+-+.++ +.++ .|.. .+.++.|--+ .-+++||.+=.|.+|.+..
T Consensus 257 ~Q~msiRR~~~P~~~D~~S~R~~V~k~-D~N~~GY~N~~T~KS~~F~~D-~~v~tGSD~~~i~~WklP~ 323 (609)
T KOG4227|consen 257 NQFMSIRRGKCPLYFDFISQRCFVLKS-DHNPNGYCNIKTIKSMTFIDD-YTVATGSDHWGIHIWKLPR 323 (609)
T ss_pred CeehhhhccCCCEEeeeecccceeEec-cCCCCcceeeeeeeeeeeecc-eeeeccCcccceEEEecCC
Confidence 9988776665666677655333 2222 2222 2445666543 4599999999999999864
No 222
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.52 E-value=3.7e-13 Score=107.10 Aligned_cols=197 Identities=13% Similarity=0.181 Sum_probs=131.2
Q ss_pred CccccEEEEEECcCCCEEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEE-EEEEc------CCCCCEEEEEeCCCe
Q 026765 18 GHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVD-QLCWD------PKHADLIATASGDKT 90 (233)
Q Consensus 18 ~H~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~-~~~~~------~~~~~~l~sg~~d~~ 90 (233)
.|...|.|+.|......+.+++.+..++-|++........ .++ .+.+. .+-.. ..+...++.++.||.
T Consensus 12 r~~e~vc~v~w~~~eei~~~~dDh~~~~~~~~~~~s~~~~---~~p--~df~pt~~h~~~rs~~~g~~~d~~~i~s~DGk 86 (737)
T KOG1524|consen 12 RNSEKVCCVDWSSNEEIYFVSDDHQIFKWSDVSRDSVEVA---KLP--DDFVPTDMHLGGRSSGGGKGSDTLLICSNDGR 86 (737)
T ss_pred ccceeEEeecccccceEEEeccCceEEEeecccchhhhhh---hCC--cccCCccccccccccCCCCCcceEEEEcCCce
Confidence 6888888999987777776666555555566654332211 111 01110 01000 112345677889999
Q ss_pred EEEEECCCCeeeeeee-ecCCeeEEEECCCCCeEEEEcCCCcEEEEEcCCCeeeeeeecCceeeEEEECCCCCEEEEEeC
Q 026765 91 VRLWDARSGKCSQQAE-LSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTG 169 (233)
Q Consensus 91 i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 169 (233)
+.+-+-. ++...... +.+.+.+-.|+|+|.-+++.++||.|++|.-...-.....+.+.++.+++|.|+.+.++...
T Consensus 87 f~il~k~-~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSrsGMLRStl~Q~~~~v~c~~W~p~S~~vl~c~- 164 (737)
T KOG1524|consen 87 FVILNKS-ARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSRSGMLRSTVVQNEESIRCARWAPNSNSIVFCQ- 164 (737)
T ss_pred EEEeccc-chhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEeccchHHHHHhhcCceeEEEEECCCCCceEEec-
Confidence 9887643 23222222 23445567899999999999999999999843221111233456899999999988766543
Q ss_pred CCeEEEEecCCceeeeEEeeecCceeEEEECCCCCEEEEeeCCCcEEEEecC
Q 026765 170 NGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDIS 221 (233)
Q Consensus 170 ~~~v~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~las~s~dg~v~iwd~~ 221 (233)
.+.+.+-.+.....+....+|++-|.+++|+|.++.+++|++|-..+|||..
T Consensus 165 g~h~~IKpL~~n~k~i~WkAHDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~ 216 (737)
T KOG1524|consen 165 GGHISIKPLAANSKIIRWRAHDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQ 216 (737)
T ss_pred CCeEEEeecccccceeEEeccCcEEEEeecCccccceeecCCceeEEeeccc
Confidence 3456665555555555678899999999999999999999999999999975
No 223
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.51 E-value=5.1e-13 Score=97.65 Aligned_cols=160 Identities=14% Similarity=0.242 Sum_probs=118.9
Q ss_pred CccccEEEEEECcC-CC--EEEEEeCCCCEEEEecccCCC------CceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCC
Q 026765 18 GHKKKVHSVAWNCT-GT--KLASGSVDQTARVWHIEPHGH------GKVKDIELRGHADSVDQLCWDPKHADLIATASGD 88 (233)
Q Consensus 18 ~H~~~V~~~~~~~~-~~--~l~s~~~D~~v~vW~~~~~~~------~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d 88 (233)
+..+.|+|..+..+ ++ .|+.|-.+|.|.+||++.+.. ..........|..+|.++.+.+.... =++|+.+
T Consensus 148 ~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~qpvlsldyas~~~r-Gisgga~ 226 (323)
T KOG0322|consen 148 SKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHKQPVLSLDYASSCDR-GISGGAD 226 (323)
T ss_pred cccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhccCcceeeeechhhcC-CcCCCcc
Confidence 45778888887553 33 356667899999999976421 00111234569999999999875433 3588889
Q ss_pred CeEEEEECCCC--eee--eeeeecCC-eeEEEECCCCCeEEEEcCCCcEEEEEcCCCeeeeeee-cCceeeEEEECCCCC
Q 026765 89 KTVRLWDARSG--KCS--QQAELSGE-NINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRK-FGYEVNEIAWNMTGE 162 (233)
Q Consensus 89 ~~i~iwd~~~~--~~~--~~~~~~~~-~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~-~~~~~~~~~~~~~~~ 162 (233)
..+..|++... .+. .+.....+ +..+...||++.+++++.|+.|++|.-++.+++-..+ +...+++++|+|+.+
T Consensus 227 dkl~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~pLAVLkyHsagvn~vAfspd~~ 306 (323)
T KOG0322|consen 227 DKLVMYSLNHSTGSLQIRKEITLKNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNPLAVLKYHSAGVNAVAFSPDCE 306 (323)
T ss_pred ccceeeeeccccCcccccceEEecCCCccceEEccCCcEEeecccCCcEEEEEeccCCchhhhhhhhcceeEEEeCCCCc
Confidence 99999988643 221 12223322 3458889999999999999999999999988876655 456799999999999
Q ss_pred EEEEEeCCCeEEEEec
Q 026765 163 MFFLTTGNGTVEVLTY 178 (233)
Q Consensus 163 ~~~~~~~~~~v~~~~~ 178 (233)
.+++++.|+.|.+|++
T Consensus 307 lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 307 LMAAASKDARISLWKL 322 (323)
T ss_pred hhhhccCCceEEeeec
Confidence 9999999999999985
No 224
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.51 E-value=3.3e-12 Score=102.45 Aligned_cols=211 Identities=15% Similarity=0.176 Sum_probs=145.1
Q ss_pred CccccEEEEEECcCCCEE-EEEeCCCCEEEEecccCCC--------Cceee------------------EEEec----C-
Q 026765 18 GHKKKVHSVAWNCTGTKL-ASGSVDQTARVWHIEPHGH--------GKVKD------------------IELRG----H- 65 (233)
Q Consensus 18 ~H~~~V~~~~~~~~~~~l-~s~~~D~~v~vW~~~~~~~--------~~~~~------------------~~~~~----h- 65 (233)
+|...-+.+..+|||+++ |||-+--.|++||+..-.. ..+.. +++.. |
T Consensus 49 e~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLKFERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak~G~hy 128 (703)
T KOG2321|consen 49 EMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLKFERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAKYGRHY 128 (703)
T ss_pred CCccccceeEecCCCcEEEEecccCCceEEEEcccceeeeeecccccceeEEEeccchhhheEeecCceeeehhhcCeee
Confidence 588999999999999985 6777899999999753110 00000 01100 0
Q ss_pred ----cCcEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeeeeec-CCeeEEEECCCCCeEEEEcCCCcEEEEEcCCC
Q 026765 66 ----ADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELS-GENINITYKPDGTHIAVGNRDDELTILDVRKF 140 (233)
Q Consensus 66 ----~~~v~~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~ 140 (233)
...-.+++++.....+++ ++....|.=+++..|+....+... +....+..++-...|++|+.+|.+..||.+..
T Consensus 129 ~~RIP~~GRDm~y~~~scDly~-~gsg~evYRlNLEqGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~k 207 (703)
T KOG2321|consen 129 RTRIPKFGRDMKYHKPSCDLYL-VGSGSEVYRLNLEQGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDPRDK 207 (703)
T ss_pred eeecCcCCccccccCCCccEEE-eecCcceEEEEccccccccccccccccceeeeecCccceEEecccCceEEEecchhh
Confidence 011233444433344554 444455666789999887777665 55566888888889999999999999999876
Q ss_pred eeeeeeecC------------ceeeEEEECCCCCEEEEEeCCCeEEEEecCCceeeeEEeeec--CceeEEEECCCCC--
Q 026765 141 KPIHRRKFG------------YEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAHT--AGCYCIAIDPMGR-- 204 (233)
Q Consensus 141 ~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~--~~v~~i~~~p~~~-- 204 (233)
..+..+... ..++.+.|+-+|=.+++|+.+|.+.+||++..+++.. ..|. -+|..+.|.+.+.
T Consensus 208 srv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~-kdh~~e~pi~~l~~~~~~~q~ 286 (703)
T KOG2321|consen 208 SRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLV-KDHGYELPIKKLDWQDTDQQN 286 (703)
T ss_pred hhheeeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceee-cccCCccceeeecccccCCCc
Confidence 554433322 2488999998888899999999999999998887643 3344 4678899987643
Q ss_pred EEEEeeCCCcEEEEecCCcEEEEeeec
Q 026765 205 YFAVGSADSLVSLWDISEMLCVRTFTK 231 (233)
Q Consensus 205 ~las~s~dg~v~iwd~~~~~~i~~~~~ 231 (233)
.+++. ....++|||-.+|+.+..+..
T Consensus 287 ~v~S~-Dk~~~kiWd~~~Gk~~asiEp 312 (703)
T KOG2321|consen 287 KVVSM-DKRILKIWDECTGKPMASIEP 312 (703)
T ss_pred eEEec-chHHhhhcccccCCceeeccc
Confidence 34433 446799999999887665443
No 225
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.50 E-value=7.9e-14 Score=111.17 Aligned_cols=161 Identities=22% Similarity=0.399 Sum_probs=117.0
Q ss_pred EEEecCcCcEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeeeee--cCCeeEEEECC--CCCeEEEEcCCCcEEEE
Q 026765 60 IELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAEL--SGENINITYKP--DGTHIAVGNRDDELTIL 135 (233)
Q Consensus 60 ~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~--~~~~~~~~~~~--~~~~l~~~~~d~~i~i~ 135 (233)
.++.||+++|++++|+.+| .+|+||+.|-.+.|||.-..+....+.. ...++++.|-| +.+.+++|..|..|+++
T Consensus 44 ~eL~GH~GCVN~LeWn~dG-~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lf 122 (758)
T KOG1310|consen 44 AELTGHTGCVNCLEWNADG-ELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLF 122 (758)
T ss_pred hhhccccceecceeecCCC-CEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEEE
Confidence 4688999999999999875 7899999999999999877666555432 24567888877 45678899999999999
Q ss_pred EcCCCee----------eeeee-cCceeeEEEECCCC-CEEEEEeCCCeEEEEecCCceeee----------EEeeecCc
Q 026765 136 DVRKFKP----------IHRRK-FGYEVNEIAWNMTG-EMFFLTTGNGTVEVLTYPSLRPLD----------TVVAHTAG 193 (233)
Q Consensus 136 d~~~~~~----------~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~----------~~~~~~~~ 193 (233)
|+...+. ..... +...+-.++-.|++ +.+.++++||+++-+|++...... .+...--.
T Consensus 123 dl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~~~~~~~l~ny~~~lie 202 (758)
T KOG1310|consen 123 DLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPDEDCPSILVNYNPQLIE 202 (758)
T ss_pred ecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCccccccHHHHHhchhhhe
Confidence 9864211 00000 11235556667777 788999999999999997532111 11111123
Q ss_pred eeEEEECCCCC-EEEEeeCCCcEEEEecC
Q 026765 194 CYCIAIDPMGR-YFAVGSADSLVSLWDIS 221 (233)
Q Consensus 194 v~~i~~~p~~~-~las~s~dg~v~iwd~~ 221 (233)
..|+.++|... +||.|+.|-.+++||.+
T Consensus 203 lk~ltisp~rp~~laVGgsdpfarLYD~R 231 (758)
T KOG1310|consen 203 LKCLTISPSRPYYLAVGGSDPFARLYDRR 231 (758)
T ss_pred eeeeeecCCCCceEEecCCCchhhhhhhh
Confidence 56899999775 68999999999999953
No 226
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.50 E-value=1.7e-11 Score=100.40 Aligned_cols=177 Identities=14% Similarity=0.202 Sum_probs=116.1
Q ss_pred CEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEe--CCCeEEEEECCCCeeeeeeeecCCeeEEEECCCC
Q 026765 43 TARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATAS--GDKTVRLWDARSGKCSQQAELSGENINITYKPDG 120 (233)
Q Consensus 43 ~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (233)
.+.+||.+... . ..+..+...+...+|+|++..++++.. .+..+.+||+.+++........+......|+|||
T Consensus 180 ~l~~~d~dg~~---~--~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~~~~~~~~~~~SPDG 254 (429)
T PRK03629 180 ELRVSDYDGYN---Q--FVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHNGAPAFSPDG 254 (429)
T ss_pred eEEEEcCCCCC---C--EEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEccCCCCCcCCeEECCCC
Confidence 57777765321 1 123345678899999999866554432 3457899999887654443344445568999999
Q ss_pred CeEEEE-cCCC--cEEEEEcCCCeeeeeeecCceeeEEEECCCCCEEEEEeCC-CeEEEE--ecCCceeeeEEeeecCce
Q 026765 121 THIAVG-NRDD--ELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGN-GTVEVL--TYPSLRPLDTVVAHTAGC 194 (233)
Q Consensus 121 ~~l~~~-~~d~--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~--~~~~~~~~~~~~~~~~~v 194 (233)
+.|+.. ..++ .|.+||+.+.+..........+....|+|+|+.++..+.+ +...+| +...++. ..+..+....
T Consensus 255 ~~La~~~~~~g~~~I~~~d~~tg~~~~lt~~~~~~~~~~wSPDG~~I~f~s~~~g~~~Iy~~d~~~g~~-~~lt~~~~~~ 333 (429)
T PRK03629 255 SKLAFALSKTGSLNLYVMDLASGQIRQVTDGRSNNTEPTWFPDSQNLAYTSDQAGRPQVYKVNINGGAP-QRITWEGSQN 333 (429)
T ss_pred CEEEEEEcCCCCcEEEEEECCCCCEEEccCCCCCcCceEECCCCCEEEEEeCCCCCceEEEEECCCCCe-EEeecCCCCc
Confidence 988854 3344 4888998776543332233356788999999988776653 444455 5554433 3344344445
Q ss_pred eEEEECCCCCEEEEeeCC---CcEEEEecCCcEE
Q 026765 195 YCIAIDPMGRYFAVGSAD---SLVSLWDISEMLC 225 (233)
Q Consensus 195 ~~i~~~p~~~~las~s~d---g~v~iwd~~~~~~ 225 (233)
....|+|+|++|+..+.+ ..|.+||+.+++.
T Consensus 334 ~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~ 367 (429)
T PRK03629 334 QDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGV 367 (429)
T ss_pred cCEEECCCCCEEEEEEccCCCceEEEEECCCCCe
Confidence 678999999998876644 3588899987753
No 227
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.49 E-value=2.2e-11 Score=99.77 Aligned_cols=164 Identities=17% Similarity=0.189 Sum_probs=104.9
Q ss_pred EecCcCcEEEEEEcCCCCCEEEEEeCC--CeEEEEECCCCeeeeeeeecCCeeEEEECCCCCeEEE-EcCCCcEEEEE--
Q 026765 62 LRGHADSVDQLCWDPKHADLIATASGD--KTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAV-GNRDDELTILD-- 136 (233)
Q Consensus 62 ~~~h~~~v~~~~~~~~~~~~l~sg~~d--~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~d~~i~i~d-- 136 (233)
+..+...+.+.+|+|++..++++...+ ..|.+||+.+++........+......|+|||+.|+. ...++...+|.
T Consensus 191 l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d 270 (427)
T PRK02889 191 ALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRVVANFKGSNSAPAWSPDGRTLAVALSRDGNSQIYTVN 270 (427)
T ss_pred eccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEEeecCCCCccceEECCCCCEEEEEEccCCCceEEEEE
Confidence 445677889999999876554443222 4699999988876544334455567899999998874 56677666665
Q ss_pred cCCCeeeeeeecCceeeEEEECCCCCEEEEEeC-CCeEEEEec--CCceeeeEEeeecCceeEEEECCCCCEEEEeeCCC
Q 026765 137 VRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTG-NGTVEVLTY--PSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADS 213 (233)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~--~~~~~~~~~~~~~~~v~~i~~~p~~~~las~s~dg 213 (233)
+...................|+|+|+.++..+. ++...+|.. ...+. ..+..+.......+|+|+|++|+..+.++
T Consensus 271 ~~~~~~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~-~~lt~~g~~~~~~~~SpDG~~Ia~~s~~~ 349 (427)
T PRK02889 271 ADGSGLRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAA-QRVTFTGSYNTSPRISPDGKLLAYISRVG 349 (427)
T ss_pred CCCCCcEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCce-EEEecCCCCcCceEECCCCCEEEEEEccC
Confidence 433322111111223456789999998876553 456666654 33322 22222223344678999999998777654
Q ss_pred ---cEEEEecCCcEEE
Q 026765 214 ---LVSLWDISEMLCV 226 (233)
Q Consensus 214 ---~v~iwd~~~~~~i 226 (233)
.|.+||+..++..
T Consensus 350 g~~~I~v~d~~~g~~~ 365 (427)
T PRK02889 350 GAFKLYVQDLATGQVT 365 (427)
T ss_pred CcEEEEEEECCCCCeE
Confidence 5999999877643
No 228
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.49 E-value=1.1e-11 Score=101.73 Aligned_cols=178 Identities=16% Similarity=0.211 Sum_probs=114.9
Q ss_pred CCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeC---CCeEEEEECCCCeeeeeeeecCCeeEEEECC
Q 026765 42 QTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASG---DKTVRLWDARSGKCSQQAELSGENINITYKP 118 (233)
Q Consensus 42 ~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~---d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 118 (233)
..|.+||..... . ..+..+...+....|+|++..++ ..+. +..|.+||+.+++........+......|+|
T Consensus 184 ~~l~i~D~~g~~---~--~~lt~~~~~v~~p~wSpDg~~la-~~s~~~~~~~l~~~dl~~g~~~~l~~~~g~~~~~~~Sp 257 (433)
T PRK04922 184 YALQVADSDGYN---P--QTILRSAEPILSPAWSPDGKKLA-YVSFERGRSAIYVQDLATGQRELVASFRGINGAPSFSP 257 (433)
T ss_pred EEEEEECCCCCC---c--eEeecCCCccccccCCCCCCEEE-EEecCCCCcEEEEEECCCCCEEEeccCCCCccCceECC
Confidence 357788864321 1 23445677889999999876554 4442 3469999998876544333344455689999
Q ss_pred CCCeEEE-EcCCC--cEEEEEcCCCeeeeeeecCceeeEEEECCCCCEEEEEeC-CCe--EEEEecCCceeeeEEeeecC
Q 026765 119 DGTHIAV-GNRDD--ELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTG-NGT--VEVLTYPSLRPLDTVVAHTA 192 (233)
Q Consensus 119 ~~~~l~~-~~~d~--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~--v~~~~~~~~~~~~~~~~~~~ 192 (233)
||+.++. .+.++ .|.+||+.+.+...............|+|+|+.++..+. +|. +.+++..+++. ..+..+..
T Consensus 258 DG~~l~~~~s~~g~~~Iy~~d~~~g~~~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~~~iy~~dl~~g~~-~~lt~~g~ 336 (433)
T PRK04922 258 DGRRLALTLSRDGNPEIYVMDLGSRQLTRLTNHFGIDTEPTWAPDGKSIYFTSDRGGRPQIYRVAASGGSA-ERLTFQGN 336 (433)
T ss_pred CCCEEEEEEeCCCCceEEEEECCCCCeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCe-EEeecCCC
Confidence 9998764 34444 588899877654322222223456799999998887653 444 55556555432 23333333
Q ss_pred ceeEEEECCCCCEEEEeeCCC---cEEEEecCCcEEE
Q 026765 193 GCYCIAIDPMGRYFAVGSADS---LVSLWDISEMLCV 226 (233)
Q Consensus 193 ~v~~i~~~p~~~~las~s~dg---~v~iwd~~~~~~i 226 (233)
.....+|+|+|++|+..+.++ .|.+||+..+...
T Consensus 337 ~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~ 373 (433)
T PRK04922 337 YNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVR 373 (433)
T ss_pred CccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeE
Confidence 445689999999988765443 5999999877543
No 229
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.49 E-value=2.2e-10 Score=91.65 Aligned_cols=190 Identities=20% Similarity=0.261 Sum_probs=128.7
Q ss_pred EEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeeeeecCCeeEE
Q 026765 35 LASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINI 114 (233)
Q Consensus 35 l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~ 114 (233)
+++-..+++|.|.|..+. ..+. +++........+.++|++. +++.++.|+.|.++|+.+.+...+.........+
T Consensus 9 ~V~~~~~~~v~viD~~t~--~~~~--~i~~~~~~h~~~~~s~Dgr-~~yv~~rdg~vsviD~~~~~~v~~i~~G~~~~~i 83 (369)
T PF02239_consen 9 YVVERGSGSVAVIDGATN--KVVA--RIPTGGAPHAGLKFSPDGR-YLYVANRDGTVSVIDLATGKVVATIKVGGNPRGI 83 (369)
T ss_dssp EEEEGGGTEEEEEETTT---SEEE--EEE-STTEEEEEE-TT-SS-EEEEEETTSEEEEEETTSSSEEEEEE-SSEEEEE
T ss_pred EEEecCCCEEEEEECCCC--eEEE--EEcCCCCceeEEEecCCCC-EEEEEcCCCeEEEEECCcccEEEEEecCCCcceE
Confidence 355667899999987542 2222 3443334445577898764 5667789999999999999988888888888899
Q ss_pred EECCCCCeEEEEc-CCCcEEEEEcCCCeeeeeeecC--------ceeeEEEECCCCCEEEEEeC-CCeEEEEecCCceee
Q 026765 115 TYKPDGTHIAVGN-RDDELTILDVRKFKPIHRRKFG--------YEVNEIAWNMTGEMFFLTTG-NGTVEVLTYPSLRPL 184 (233)
Q Consensus 115 ~~~~~~~~l~~~~-~d~~i~i~d~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~ 184 (233)
++++||++++++. ..+.+.++|.++.+++...... ..+..+.-++....+++... .+.+.+.|+...+..
T Consensus 84 ~~s~DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~ 163 (369)
T PF02239_consen 84 AVSPDGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNL 163 (369)
T ss_dssp EE--TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCE
T ss_pred EEcCCCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEecccccc
Confidence 9999999998776 5789999999998888766543 23456667788886766655 588888888665433
Q ss_pred e-EEeeecCceeEEEECCCCCEEEEe-eCCCcEEEEecCCcEEEEee
Q 026765 185 D-TVVAHTAGCYCIAIDPMGRYFAVG-SADSLVSLWDISEMLCVRTF 229 (233)
Q Consensus 185 ~-~~~~~~~~v~~i~~~p~~~~las~-s~dg~v~iwd~~~~~~i~~~ 229 (233)
. ....-........|+|+++|++.+ ..+..|-++|.+++..+..+
T Consensus 164 ~~~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i 210 (369)
T PF02239_consen 164 KVTTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALI 210 (369)
T ss_dssp EEEEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEE
T ss_pred ceeeecccccccccccCcccceeeecccccceeEEEeeccceEEEEe
Confidence 2 222334456778999999987654 45678999999998876654
No 230
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.47 E-value=4.4e-12 Score=94.09 Aligned_cols=200 Identities=21% Similarity=0.204 Sum_probs=135.6
Q ss_pred EEEEEECcCCCEEEEEeCCCCEEEEecccCCCCceee-EEEecCcCcEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCe-
Q 026765 23 VHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKD-IELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGK- 100 (233)
Q Consensus 23 V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~~~~~-~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~- 100 (233)
..++.|++.+..++++..+|.+.+=+.. ...++. ..+++|.-..--+.|+...++++++|+.|+.+..||+|..+
T Consensus 124 ~lslD~~~~~~~i~vs~s~G~~~~v~~t---~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~ 200 (339)
T KOG0280|consen 124 ALSLDISTSGTKIFVSDSRGSISGVYET---EMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKT 200 (339)
T ss_pred eeEEEeeccCceEEEEcCCCcEEEEecc---eeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcc
Confidence 4477888999999999999998843321 112211 25678988888888988888999999999999999999432
Q ss_pred eeee--eeecCCeeEEEEC-CCCCeEEEEcCCCcEEEEEcCC-CeeeeeeecCceeeEEEECCCCC-EEEEEeCCCeEEE
Q 026765 101 CSQQ--AELSGENINITYK-PDGTHIAVGNRDDELTILDVRK-FKPIHRRKFGYEVNEIAWNMTGE-MFFLTTGNGTVEV 175 (233)
Q Consensus 101 ~~~~--~~~~~~~~~~~~~-~~~~~l~~~~~d~~i~i~d~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~v~~ 175 (233)
++.. ......+.++.-+ |.+.+|++|+.|..|++||.|+ .+++...+.+..|..+.++|... .+++++.-.-.++
T Consensus 201 ~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~~~~v~GGVWRi~~~p~~~~~lL~~CMh~G~ki 280 (339)
T KOG0280|consen 201 FIWHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLFKAKVGGGVWRIKHHPEIFHRLLAACMHNGAKI 280 (339)
T ss_pred eeeecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCccccCccccceEEEEecchhhhHHHHHHHhcCceE
Confidence 3222 1123344555544 4678999999999999999994 67777666677889999988654 2223333333444
Q ss_pred EecCC--ce---eeeEEeeecCceeEEEECCCCCEEEEee-CCCcEE-EEecCCcEE
Q 026765 176 LTYPS--LR---PLDTVVAHTAGCYCIAIDPMGRYFAVGS-ADSLVS-LWDISEMLC 225 (233)
Q Consensus 176 ~~~~~--~~---~~~~~~~~~~~v~~i~~~p~~~~las~s-~dg~v~-iwd~~~~~~ 225 (233)
.+... .+ .......|.+-++.-.|+.....|||++ .|+.++ +|-..++++
T Consensus 281 ~~~~~~~~e~~~~~~s~~~hdSl~YG~DWd~~~~~lATCsFYDk~~~~~Wl~~t~~~ 337 (339)
T KOG0280|consen 281 LDSSDKVLEFQIVLPSDKIHDSLCYGGDWDSKDSFLATCSFYDKKIRQLWLHITGEP 337 (339)
T ss_pred EEecccccchheeeeccccccceeeccccccccceeeeeeccccceeeeeeeccCCc
Confidence 44432 22 2233445776666677766566899987 677755 886665543
No 231
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.47 E-value=7.3e-11 Score=97.06 Aligned_cols=175 Identities=13% Similarity=0.163 Sum_probs=114.5
Q ss_pred CEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEe--CCCeEEEEECCCCeeeeeeeecCCeeEEEECCCC
Q 026765 43 TARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATAS--GDKTVRLWDARSGKCSQQAELSGENINITYKPDG 120 (233)
Q Consensus 43 ~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 120 (233)
.|.+||.+.. .. ..+..|...+...+|+|++..++++.. .+..|.+||+.+++........+......|+|||
T Consensus 183 ~l~~~d~dg~---~~--~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~~l~~~~g~~~~~~~SPDG 257 (435)
T PRK05137 183 RLAIMDQDGA---NV--RYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRELVGNFPGMTFAPRFSPDG 257 (435)
T ss_pred EEEEECCCCC---Cc--EEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEEEeecCCCcccCcEECCCC
Confidence 5666665421 11 235567789999999998765544432 3468999999888654433344555678999999
Q ss_pred CeEE-EEcCCCc--EEEEEcCCCeeeeeeecCceeeEEEECCCCCEEEEEeC-CC--eEEEEecCCceeeeEEeeecCce
Q 026765 121 THIA-VGNRDDE--LTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTG-NG--TVEVLTYPSLRPLDTVVAHTAGC 194 (233)
Q Consensus 121 ~~l~-~~~~d~~--i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~v~~~~~~~~~~~~~~~~~~~~v 194 (233)
+.|+ +...++. |.+||+.+.+...............|+|+|+.++..+. +| .+.+++....+. ..+..+...+
T Consensus 258 ~~la~~~~~~g~~~Iy~~d~~~~~~~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g~~~Iy~~d~~g~~~-~~lt~~~~~~ 336 (435)
T PRK05137 258 RKVVMSLSQGGNTDIYTMDLRSGTTTRLTDSPAIDTSPSYSPDGSQIVFESDRSGSPQLYVMNADGSNP-RRISFGGGRY 336 (435)
T ss_pred CEEEEEEecCCCceEEEEECCCCceEEccCCCCccCceeEcCCCCEEEEEECCCCCCeEEEEECCCCCe-EEeecCCCcc
Confidence 9876 4444544 67778876544322222233556899999998887653 33 577777655433 3344344556
Q ss_pred eEEEECCCCCEEEEeeCC---CcEEEEecCCc
Q 026765 195 YCIAIDPMGRYFAVGSAD---SLVSLWDISEM 223 (233)
Q Consensus 195 ~~i~~~p~~~~las~s~d---g~v~iwd~~~~ 223 (233)
....|+|+|++|+..+.+ ..|.+||+..+
T Consensus 337 ~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~ 368 (435)
T PRK05137 337 STPVWSPRGDLIAFTKQGGGQFSIGVMKPDGS 368 (435)
T ss_pred cCeEECCCCCEEEEEEcCCCceEEEEEECCCC
Confidence 678899999999877654 35888887544
No 232
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.44 E-value=3e-13 Score=108.39 Aligned_cols=216 Identities=20% Similarity=0.317 Sum_probs=152.0
Q ss_pred CCCCCCccceeeeCccccEEEEEECcCCCEEEEEeCCCCEEEEecccCCCCc---eeeEEEecCcCcEEEEEEcCCCCCE
Q 026765 5 SIPFKNLHSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGK---VKDIELRGHADSVDQLCWDPKHADL 81 (233)
Q Consensus 5 ~~~~~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~~---~~~~~~~~h~~~v~~~~~~~~~~~~ 81 (233)
+..|+......|.||...|++++--...+-++|++.|++||+|.+.+...+. .++..+..|+.+|.++.|-.+. +.
T Consensus 720 ~ln~~~irL~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~l-r~ 798 (1034)
T KOG4190|consen 720 NLNFDHIRLCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADL-RS 798 (1034)
T ss_pred ccccceeeeecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeecc-ce
Confidence 4457777777899999999998765566788999999999999998765443 2566788999999999997653 34
Q ss_pred EEEEeCCCeEEEEECCCCeeeeeee---ecCCeeEEEECC--CCCeEEE-EcCCCcEEEEEcCCCeeeeeeecC------
Q 026765 82 IATASGDKTVRLWDARSGKCSQQAE---LSGENINITYKP--DGTHIAV-GNRDDELTILDVRKFKPIHRRKFG------ 149 (233)
Q Consensus 82 l~sg~~d~~i~iwd~~~~~~~~~~~---~~~~~~~~~~~~--~~~~l~~-~~~d~~i~i~d~~~~~~~~~~~~~------ 149 (233)
+ ++.|+-|++||---++...... -++....+.-.| +...++. ++...+++++|.+..+.+...+..
T Consensus 799 i--~ScD~giHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pn 876 (1034)
T KOG4190|consen 799 I--ASCDGGIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPN 876 (1034)
T ss_pred e--eeccCcceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEEeccCCCCc
Confidence 4 4578999999976555433221 122222232223 3344444 467889999999987766555432
Q ss_pred ceeeEEEECCCCCEEEEEeCCCeEEEEecCCceeeeEEeeecCceeEEEECCCCCEEEEeeCCCcEEE-EecCCcE
Q 026765 150 YEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSL-WDISEML 224 (233)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~las~s~dg~v~i-wd~~~~~ 224 (233)
..+.+++..+.|+.++++-.+|.+.+.|.++++.+.......-....++ -|..+.|+....|..+.| |-..++.
T Consensus 877 a~~R~iaVa~~GN~lAa~LSnGci~~LDaR~G~vINswrpmecdllqla-apsdq~L~~saldHslaVnWhaldgi 951 (1034)
T KOG4190|consen 877 ALTRAIAVADKGNKLAAALSNGCIAILDARNGKVINSWRPMECDLLQLA-APSDQALAQSALDHSLAVNWHALDGI 951 (1034)
T ss_pred hheeEEEeccCcchhhHHhcCCcEEEEecCCCceeccCCcccchhhhhc-CchhHHHHhhcccceeEeeehhcCCe
Confidence 2367888999999999999999999999999887765544332222222 356667777777777777 7666553
No 233
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.42 E-value=2.1e-09 Score=85.84 Aligned_cols=201 Identities=18% Similarity=0.286 Sum_probs=133.4
Q ss_pred EEEEEECcCCCEEEEEeC-CCCEEEEecccCCCCceeeE--EE--e--------cCcCcEEEEEEcCCCCCEEEEEeCCC
Q 026765 23 VHSVAWNCTGTKLASGSV-DQTARVWHIEPHGHGKVKDI--EL--R--------GHADSVDQLCWDPKHADLIATASGDK 89 (233)
Q Consensus 23 V~~~~~~~~~~~l~s~~~-D~~v~vW~~~~~~~~~~~~~--~~--~--------~h~~~v~~~~~~~~~~~~l~sg~~d~ 89 (233)
-..++++|++++|+++.+ +++|.++++.... .+... .+ . .......++.++|++..++++--...
T Consensus 89 p~~i~~~~~g~~l~vany~~g~v~v~~l~~~g--~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D 166 (345)
T PF10282_consen 89 PCHIAVDPDGRFLYVANYGGGSVSVFPLDDDG--SLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGAD 166 (345)
T ss_dssp EEEEEECTTSSEEEEEETTTTEEEEEEECTTS--EEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTT
T ss_pred cEEEEEecCCCEEEEEEccCCeEEEEEccCCc--ccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCC
Confidence 346889999999988875 8999999997532 22111 11 1 11245778999999776666666667
Q ss_pred eEEEEECCCCe--eee--e--eeecCCeeEEEECCCCCeEEEEc-CCCcEEEEEcC--CCe--eeeeeec---C----ce
Q 026765 90 TVRLWDARSGK--CSQ--Q--AELSGENINITYKPDGTHIAVGN-RDDELTILDVR--KFK--PIHRRKF---G----YE 151 (233)
Q Consensus 90 ~i~iwd~~~~~--~~~--~--~~~~~~~~~~~~~~~~~~l~~~~-~d~~i~i~d~~--~~~--~~~~~~~---~----~~ 151 (233)
.|.+|++.... ... . ......+.-+.|+|+++++.+.. .++.|.++++. ... .+..... . ..
T Consensus 167 ~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 246 (345)
T PF10282_consen 167 RVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENA 246 (345)
T ss_dssp EEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSS
T ss_pred EEEEEEEeCCCceEEEeeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCC
Confidence 89999987654 322 1 12234456799999999886554 56789999887 322 2222221 1 14
Q ss_pred eeEEEECCCCCEEEEEe-CCCeEEEEecCC----ceeeeEEeeecCceeEEEECCCCCEEEEee-CCCcEEEEec--CCc
Q 026765 152 VNEIAWNMTGEMFFLTT-GNGTVEVLTYPS----LRPLDTVVAHTAGCYCIAIDPMGRYFAVGS-ADSLVSLWDI--SEM 223 (233)
Q Consensus 152 ~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~----~~~~~~~~~~~~~v~~i~~~p~~~~las~s-~dg~v~iwd~--~~~ 223 (233)
...+.++|+|+++.++. ..+.|.+|+++. .+.+..+.........++++|+|++|+++. .++.|.+|++ ++|
T Consensus 247 ~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~~tG 326 (345)
T PF10282_consen 247 PAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFDIDPDTG 326 (345)
T ss_dssp EEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTT
T ss_pred ceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEEEeCCCC
Confidence 66789999999988775 578899999832 244444444455678999999999998877 5678999987 455
Q ss_pred EE
Q 026765 224 LC 225 (233)
Q Consensus 224 ~~ 225 (233)
..
T Consensus 327 ~l 328 (345)
T PF10282_consen 327 KL 328 (345)
T ss_dssp EE
T ss_pred cE
Confidence 54
No 234
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.42 E-value=2e-11 Score=97.37 Aligned_cols=147 Identities=20% Similarity=0.335 Sum_probs=107.6
Q ss_pred EEEEeCCCeEEEEECCCCeeeeee-----eecCCeeEEEECCCC-CeEEEEcCCCcEEEEEcCCC---------------
Q 026765 82 IATASGDKTVRLWDARSGKCSQQA-----ELSGENINITYKPDG-THIAVGNRDDELTILDVRKF--------------- 140 (233)
Q Consensus 82 l~sg~~d~~i~iwd~~~~~~~~~~-----~~~~~~~~~~~~~~~-~~l~~~~~d~~i~i~d~~~~--------------- 140 (233)
++.|-.-|.+.+.|....+....+ .....+.++.|-|.+ ..+++...+|.+.+||..-.
T Consensus 188 llIGf~tGqvq~idp~~~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~~k~~~ 267 (636)
T KOG2394|consen 188 LLIGFTTGQVQLIDPINFEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQALKDGD 267 (636)
T ss_pred eEEeeccCceEEecchhhHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccccCCCC
Confidence 346777788888886553222111 123456788887754 45667788999999975310
Q ss_pred -------------eeeeeee-cCceeeEEEECCCCCEEEEEeCCCeEEEEecCCceeeeEEeeecCceeEEEECCCCCEE
Q 026765 141 -------------KPIHRRK-FGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYF 206 (233)
Q Consensus 141 -------------~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~l 206 (233)
.++.... ....++..+|++||+++++.+.||.++|+++.+.+....+...-+...|++|||||+||
T Consensus 268 ~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYFGGLLCvcWSPDGKyI 347 (636)
T KOG2394|consen 268 QFAILTSKSKKTRNPVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKSYFGGLLCVCWSPDGKYI 347 (636)
T ss_pred eeEEeeeeccccCCccceeEeccccccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHHhhccceEEEEEcCCccEE
Confidence 0000000 01246788999999999999999999999999877766655566778999999999999
Q ss_pred EEeeCCCcEEEEecCCcEEEEe
Q 026765 207 AVGSADSLVSLWDISEMLCVRT 228 (233)
Q Consensus 207 as~s~dg~v~iwd~~~~~~i~~ 228 (233)
++|++|-.|.||.+.+++.|..
T Consensus 348 vtGGEDDLVtVwSf~erRVVAR 369 (636)
T KOG2394|consen 348 VTGGEDDLVTVWSFEERRVVAR 369 (636)
T ss_pred EecCCcceEEEEEeccceEEEe
Confidence 9999999999999999988765
No 235
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.41 E-value=3.5e-10 Score=92.56 Aligned_cols=211 Identities=11% Similarity=0.080 Sum_probs=123.5
Q ss_pred eeeeCccccEEEEEECcCCCEE---EEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCC-
Q 026765 14 REYTGHKKKVHSVAWNCTGTKL---ASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDK- 89 (233)
Q Consensus 14 ~~~~~H~~~V~~~~~~~~~~~l---~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~- 89 (233)
+.++.....+..-.|+|||+.+ ++...++.-.||-.+..+.... .+...........|+|++..++++...++
T Consensus 178 ~~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~---~lt~~~g~~~~p~wSPDG~~Laf~s~~~g~ 254 (428)
T PRK01029 178 RPLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGK---KILALQGNQLMPTFSPRKKLLAFISDRYGN 254 (428)
T ss_pred eEcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCce---EeecCCCCccceEECCCCCEEEEEECCCCC
Confidence 3344455667788999999752 2444556655664433222211 22223344556799999877766654333
Q ss_pred ---eEEEEECCCC---eeeeeeeec-CCeeEEEECCCCCeEEEEc-CCCcEEEE--EcCC-Ceeeeeee-cCceeeEEEE
Q 026765 90 ---TVRLWDARSG---KCSQQAELS-GENINITYKPDGTHIAVGN-RDDELTIL--DVRK-FKPIHRRK-FGYEVNEIAW 157 (233)
Q Consensus 90 ---~i~iwd~~~~---~~~~~~~~~-~~~~~~~~~~~~~~l~~~~-~d~~i~i~--d~~~-~~~~~~~~-~~~~~~~~~~ 157 (233)
.+.+|++..+ ...+..... .......|+|||+.|+..+ .++...+| ++.. ........ ....+....|
T Consensus 255 ~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~~~~~p~w 334 (428)
T PRK01029 255 PDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYRNSSCPAW 334 (428)
T ss_pred cceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccccceEEeccCCCCccceeE
Confidence 3445776643 222222111 2234579999999887554 45554555 4432 11122221 2234567889
Q ss_pred CCCCCEEEEEeCC---CeEEEEecCCceeeeEEeeecCceeEEEECCCCCEEEEeeC---CCcEEEEecCCcEEEEe
Q 026765 158 NMTGEMFFLTTGN---GTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSA---DSLVSLWDISEMLCVRT 228 (233)
Q Consensus 158 ~~~~~~~~~~~~~---~~v~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~las~s~---dg~v~iwd~~~~~~i~~ 228 (233)
+|+|+.++....+ ..+.+||..+++.. .+......+....|+|+|++|+..+. ...|.++|+..++..+.
T Consensus 335 SPDG~~Laf~~~~~g~~~I~v~dl~~g~~~-~Lt~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~~~L 410 (428)
T PRK01029 335 SPDGKKIAFCSVIKGVRQICVYDLATGRDY-QLTTSPENKESPSWAIDSLHLVYSAGNSNESELYLISLITKKTRKI 410 (428)
T ss_pred CCCCCEEEEEEcCCCCcEEEEEECCCCCeE-EccCCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEe
Confidence 9999998876542 46888888776543 33333345677899999998775433 35688999987765433
No 236
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.41 E-value=2.3e-10 Score=93.70 Aligned_cols=163 Identities=15% Similarity=0.207 Sum_probs=109.2
Q ss_pred EecCcCcEEEEEEcCCCCCEEEEEeCC--CeEEEEECCCCeeeeeeeecCCeeEEEECCCCCeEEE-EcCCC--cEEEEE
Q 026765 62 LRGHADSVDQLCWDPKHADLIATASGD--KTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAV-GNRDD--ELTILD 136 (233)
Q Consensus 62 ~~~h~~~v~~~~~~~~~~~~l~sg~~d--~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~d~--~i~i~d 136 (233)
+..+...+...+|+|++..++++...+ ..|.+||+.+++........+....++|+||++.|+. ...++ .|.+||
T Consensus 185 l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d 264 (417)
T TIGR02800 185 ITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREKVASFPGMNGAPAFSPDGSKLAVSLSKDGNPDIYVMD 264 (417)
T ss_pred eecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEEeecCCCCccceEECCCCCEEEEEECCCCCccEEEEE
Confidence 445666788899999876554443222 4799999988765444444445566899999998764 34443 588888
Q ss_pred cCCCeeeeeeecCceeeEEEECCCCCEEEEEeC-CC--eEEEEecCCceeeeEEeeecCceeEEEECCCCCEEEEeeCCC
Q 026765 137 VRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTG-NG--TVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADS 213 (233)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~v~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~las~s~dg 213 (233)
+.+.................|+++++.++..+. .+ .+.+++....+. ..+..+...+....|+|+|++|+.++.++
T Consensus 265 ~~~~~~~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~~~iy~~d~~~~~~-~~l~~~~~~~~~~~~spdg~~i~~~~~~~ 343 (417)
T TIGR02800 265 LDGKQLTRLTNGPGIDTEPSWSPDGKSIAFTSDRGGSPQIYMMDADGGEV-RRLTFRGGYNASPSWSPDGDLIAFVHREG 343 (417)
T ss_pred CCCCCEEECCCCCCCCCCEEECCCCCEEEEEECCCCCceEEEEECCCCCE-EEeecCCCCccCeEECCCCCEEEEEEccC
Confidence 876543322222222345689999998876654 33 567777665443 34444555667889999999999888776
Q ss_pred ---cEEEEecCCcEE
Q 026765 214 ---LVSLWDISEMLC 225 (233)
Q Consensus 214 ---~v~iwd~~~~~~ 225 (233)
.|.+||+..+..
T Consensus 344 ~~~~i~~~d~~~~~~ 358 (417)
T TIGR02800 344 GGFNIAVMDLDGGGE 358 (417)
T ss_pred CceEEEEEeCCCCCe
Confidence 789999887543
No 237
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.40 E-value=1.5e-11 Score=93.15 Aligned_cols=213 Identities=16% Similarity=0.281 Sum_probs=134.3
Q ss_pred ccccEEEEEECcCCCEEEEEeCCCCEEEEecccCCCCce-eeEEEecC------------cCcEEEEEEcCCCC-CEEEE
Q 026765 19 HKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKV-KDIELRGH------------ADSVDQLCWDPKHA-DLIAT 84 (233)
Q Consensus 19 H~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~~~-~~~~~~~h------------~~~v~~~~~~~~~~-~~l~s 84 (233)
....|.++.|+..|++||||+.+|.|.++.-+....+.. -..++..| ...|..+.|.+++. ..++.
T Consensus 24 eadiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLl 103 (433)
T KOG1354|consen 24 EADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLL 103 (433)
T ss_pred hhcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEE
Confidence 466799999999999999999999999996543211100 01122223 23577888876542 34455
Q ss_pred EeCCCeEEEEECCCCeeee---------------eeee----------------------cCCeeEEEECCCCCeEEEEc
Q 026765 85 ASGDKTVRLWDARSGKCSQ---------------QAEL----------------------SGENINITYKPDGTHIAVGN 127 (233)
Q Consensus 85 g~~d~~i~iwd~~~~~~~~---------------~~~~----------------------~~~~~~~~~~~~~~~l~~~~ 127 (233)
...|++|++|.++...... .+.. .-.+.++.+..|...++++
T Consensus 104 stNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lSA- 182 (433)
T KOG1354|consen 104 STNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFLSA- 182 (433)
T ss_pred ecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEeec-
Confidence 6789999999886432111 0000 0012246666676666544
Q ss_pred CCCcEEEEEcCCCe----eeeeeecC-----ceeeEEEECCCC-CEEEEEeCCCeEEEEecCCceeee----EE------
Q 026765 128 RDDELTILDVRKFK----PIHRRKFG-----YEVNEIAWNMTG-EMFFLTTGNGTVEVLTYPSLRPLD----TV------ 187 (233)
Q Consensus 128 ~d~~i~i~d~~~~~----~~~~~~~~-----~~~~~~~~~~~~-~~~~~~~~~~~v~~~~~~~~~~~~----~~------ 187 (233)
.|-.|.+|+++-.. .+-..+.. .-+++..|+|.. +.++.++..|+|++.|.+...... .+
T Consensus 183 DdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEepedp 262 (433)
T KOG1354|consen 183 DDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEPEDP 262 (433)
T ss_pred cceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhccccCC
Confidence 46789999986422 22111111 236778888864 667888899999999987321110 01
Q ss_pred ------eeecCceeEEEECCCCCEEEEeeCCCcEEEEec-CCcEEEEeeecCC
Q 026765 188 ------VAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDI-SEMLCVRTFTKLE 233 (233)
Q Consensus 188 ------~~~~~~v~~i~~~p~~~~las~s~dg~v~iwd~-~~~~~i~~~~~~~ 233 (233)
..--..|..+.|+++|+|+++=+ =-+|+|||+ -+..++.+|+.|+
T Consensus 263 ~~rsffseiIsSISDvKFs~sGryilsRD-yltvk~wD~nme~~pv~t~~vh~ 314 (433)
T KOG1354|consen 263 SSRSFFSEIISSISDVKFSHSGRYILSRD-YLTVKLWDLNMEAKPVETYPVHE 314 (433)
T ss_pred cchhhHHHHhhhhhceEEccCCcEEEEec-cceeEEEeccccCCcceEEeehH
Confidence 11123467899999999988543 268999999 5777888888663
No 238
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.39 E-value=1.3e-09 Score=81.94 Aligned_cols=157 Identities=15% Similarity=0.219 Sum_probs=109.1
Q ss_pred ccccEEEEEECcCCCEEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEE-EEEeCCCeEEEEECC
Q 026765 19 HKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLI-ATASGDKTVRLWDAR 97 (233)
Q Consensus 19 H~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l-~sg~~d~~i~iwd~~ 97 (233)
.+.+|.+|.+.++ +++..- ++.|.||..... .......+.........+++-+.+ ..+| +-|-.-|+|+|-|+.
T Consensus 93 f~~~I~~V~l~r~--riVvvl-~~~I~VytF~~n-~k~l~~~et~~NPkGlC~~~~~~~-k~~LafPg~k~GqvQi~dL~ 167 (346)
T KOG2111|consen 93 FNSEIKAVKLRRD--RIVVVL-ENKIYVYTFPDN-PKLLHVIETRSNPKGLCSLCPTSN-KSLLAFPGFKTGQVQIVDLA 167 (346)
T ss_pred eccceeeEEEcCC--eEEEEe-cCeEEEEEcCCC-hhheeeeecccCCCceEeecCCCC-ceEEEcCCCccceEEEEEhh
Confidence 5667777777653 444433 688999987532 222333333333334433333222 2233 334556899999987
Q ss_pred CCee---eeeeeecCCeeEEEECCCCCeEEEEcCCCc-EEEEEcCCCeeeeeeecC---ceeeEEEECCCCCEEEEEeCC
Q 026765 98 SGKC---SQQAELSGENINITYKPDGTHIAVGNRDDE-LTILDVRKFKPIHRRKFG---YEVNEIAWNMTGEMFFLTTGN 170 (233)
Q Consensus 98 ~~~~---~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~-i~i~d~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~ 170 (233)
..+. .....+...+.+++.+.+|..+|+++..|+ |+|||.++++.+....-+ ..+.+++|+|+..++++++..
T Consensus 168 ~~~~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~~s~LavsSdK 247 (346)
T KOG2111|consen 168 STKPNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSPNSSWLAVSSDK 247 (346)
T ss_pred hcCcCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCCCccEEEEEcCC
Confidence 6554 223334566778999999999999999987 799999999888776543 469999999999999999999
Q ss_pred CeEEEEecCC
Q 026765 171 GTVEVLTYPS 180 (233)
Q Consensus 171 ~~v~~~~~~~ 180 (233)
|+++++.++.
T Consensus 248 gTlHiF~l~~ 257 (346)
T KOG2111|consen 248 GTLHIFSLRD 257 (346)
T ss_pred CeEEEEEeec
Confidence 9999998754
No 239
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.37 E-value=2.7e-09 Score=85.49 Aligned_cols=211 Identities=17% Similarity=0.207 Sum_probs=126.9
Q ss_pred eeeeCccccEEEEEECcCCCEEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCCeEEE
Q 026765 14 REYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRL 93 (233)
Q Consensus 14 ~~~~~H~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~i 93 (233)
.++....+.-..+.|+|||+++..++.|+.|.++|+.... .+.. ++. ......+++++++..++++...++.+.+
T Consensus 30 ~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~--~v~~--i~~-G~~~~~i~~s~DG~~~~v~n~~~~~v~v 104 (369)
T PF02239_consen 30 ARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGK--VVAT--IKV-GGNPRGIAVSPDGKYVYVANYEPGTVSV 104 (369)
T ss_dssp EEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSS--EEEE--EE--SSEEEEEEE--TTTEEEEEEEETTEEEE
T ss_pred EEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCccc--EEEE--Eec-CCCcceEEEcCCCCEEEEEecCCCceeE
Confidence 3454333333457899999999999999999999997532 2332 322 2346779999987666566667899999
Q ss_pred EECCCCeeeeeeeecC--------CeeEEEECCCCCeEEEEcC-CCcEEEEEcCCCeee--eeeecCceeeEEEECCCCC
Q 026765 94 WDARSGKCSQQAELSG--------ENINITYKPDGTHIAVGNR-DDELTILDVRKFKPI--HRRKFGYEVNEIAWNMTGE 162 (233)
Q Consensus 94 wd~~~~~~~~~~~~~~--------~~~~~~~~~~~~~l~~~~~-d~~i~i~d~~~~~~~--~~~~~~~~~~~~~~~~~~~ 162 (233)
+|.++.+........+ .+..+..+|....++..-. .+.+.+.|....+.. .....+.......|+++++
T Consensus 105 ~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~dpdgr 184 (369)
T PF02239_consen 105 IDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKVGRFPHDGGFDPDGR 184 (369)
T ss_dssp EETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEEEEEE--TTEEEEEE-TTSS
T ss_pred eccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccceeeecccccccccccCcccc
Confidence 9999887766554321 2334666777775555544 488888887665433 2333444566789999999
Q ss_pred EEEEE-eCCCeEEEEecCCceeeeEE------------------------------------------------------
Q 026765 163 MFFLT-TGNGTVEVLTYPSLRPLDTV------------------------------------------------------ 187 (233)
Q Consensus 163 ~~~~~-~~~~~v~~~~~~~~~~~~~~------------------------------------------------------ 187 (233)
+++++ ..++.+.++|..+.+....+
T Consensus 185 y~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~ 264 (369)
T PF02239_consen 185 YFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKVVKT 264 (369)
T ss_dssp EEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBTSEEEE
T ss_pred eeeecccccceeEEEeeccceEEEEeeccccccccccccccCCCcceEEeeccccceecccccCCccccchhhcCeEEEE
Confidence 88765 45567777776554322111
Q ss_pred -eeecCceeEEEECCCCCEEEEe----eCCCcEEEEecCCcEEEEeee
Q 026765 188 -VAHTAGCYCIAIDPMGRYFAVG----SADSLVSLWDISEMLCVRTFT 230 (233)
Q Consensus 188 -~~~~~~v~~i~~~p~~~~las~----s~dg~v~iwd~~~~~~i~~~~ 230 (233)
.....+ .-++.+|+++++... ...+.|.|+|.++.+.++++.
T Consensus 265 I~~~G~g-lFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~ 311 (369)
T PF02239_consen 265 IPTQGGG-LFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLKVVKTIT 311 (369)
T ss_dssp EE-SSSS---EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HH
T ss_pred EECCCCc-ceeecCCCCccEEeeccCCCCCceEEEEECcCcceeEEEe
Confidence 111112 346779999999887 455899999999998888764
No 240
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.36 E-value=5.1e-11 Score=103.12 Aligned_cols=170 Identities=18% Similarity=0.280 Sum_probs=120.4
Q ss_pred eEEEecCcCcEEEEEEcCCCCCEEEEEeCCCeEEEEECCCC-------eeeeeee-ecCCeeEEEECCCCCeEEEEcCCC
Q 026765 59 DIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSG-------KCSQQAE-LSGENINITYKPDGTHIAVGNRDD 130 (233)
Q Consensus 59 ~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~iwd~~~~-------~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~d~ 130 (233)
...+..|...+..++.++..+.+++|||.||+|++||.+.- ++..+.. .......+...+.++.+|+++.||
T Consensus 1041 VAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~t~DG 1120 (1431)
T KOG1240|consen 1041 VAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNGDQFAVSTKDG 1120 (1431)
T ss_pred eehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCCCeEEEEcCCC
Confidence 34566788889999998877789999999999999998642 1122222 234556678889999999999999
Q ss_pred cEEEEEcCCCee-----eeeee-----cCceeeEEEECCC-C-CEEEEEeCCCeEEEEecCCceeeeEE--eeecCceeE
Q 026765 131 ELTILDVRKFKP-----IHRRK-----FGYEVNEIAWNMT-G-EMFFLTTGNGTVEVLTYPSLRPLDTV--VAHTAGCYC 196 (233)
Q Consensus 131 ~i~i~d~~~~~~-----~~~~~-----~~~~~~~~~~~~~-~-~~~~~~~~~~~v~~~~~~~~~~~~~~--~~~~~~v~~ 196 (233)
.+.+.++...+. ..... .+.-+...++... . ..++.+...+.+..||.+.......+ ....+.|++
T Consensus 1121 ~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG~vTS 1200 (1431)
T KOG1240|consen 1121 SVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHGLVTS 1200 (1431)
T ss_pred eEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhHHhhhcCccccceeE
Confidence 999998865211 11111 1112222233222 2 36778888999999998765443332 234567999
Q ss_pred EEECCCCCEEEEeeCCCcEEEEecCCcEEEEe
Q 026765 197 IAIDPMGRYFAVGSADSLVSLWDISEMLCVRT 228 (233)
Q Consensus 197 i~~~p~~~~las~s~dg~v~iwd~~~~~~i~~ 228 (233)
++.+|.+.++++|+..|.+.+||++=+.++..
T Consensus 1201 i~idp~~~WlviGts~G~l~lWDLRF~~~i~s 1232 (1431)
T KOG1240|consen 1201 IVIDPWCNWLVIGTSRGQLVLWDLRFRVPILS 1232 (1431)
T ss_pred EEecCCceEEEEecCCceEEEEEeecCceeec
Confidence 99999999999999999999999987766654
No 241
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.36 E-value=7.1e-10 Score=88.99 Aligned_cols=198 Identities=21% Similarity=0.310 Sum_probs=136.1
Q ss_pred CccccEEEEEECcCC--CEEEE-----EeCCCCEEEEecccCCCCc-eeeEEEecCcCcEEEEEEcCCCCCEEEEEeCC-
Q 026765 18 GHKKKVHSVAWNCTG--TKLAS-----GSVDQTARVWHIEPHGHGK-VKDIELRGHADSVDQLCWDPKHADLIATASGD- 88 (233)
Q Consensus 18 ~H~~~V~~~~~~~~~--~~l~s-----~~~D~~v~vW~~~~~~~~~-~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d- 88 (233)
-|...|+.+.++|.. ..+|+ +|.-..||||......... +....+. ..+. ..+.|++.+..+|+-++.|
T Consensus 163 l~~~~i~~f~lSpgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFF-kadk-vqm~WN~~gt~LLvLastdV 240 (566)
T KOG2315|consen 163 LSVSGITMLSLSPGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFF-KADK-VQMKWNKLGTALLVLASTDV 240 (566)
T ss_pred eeccceeeEEecCCCCCceEEEEccCCCCCCcEEEEeccccccccchhhhcccc-ccce-eEEEeccCCceEEEEEEEee
Confidence 367788999999863 34443 5667789999875222111 1111111 1122 3467887776666544432
Q ss_pred ----------CeEEEEECCCCeeeeeeeecCCeeEEEECCCCCeEEEEc--CCCcEEEEEcCCCeeeeeeecCceeeEEE
Q 026765 89 ----------KTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGN--RDDELTILDVRKFKPIHRRKFGYEVNEIA 156 (233)
Q Consensus 89 ----------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~d~~i~i~d~~~~~~~~~~~~~~~~~~~~ 156 (233)
.++.+.++....+...+.-.+++.++.|+|+++.++++. .=.++.|+|++. .++..... .+-+.+.
T Consensus 241 Dktn~SYYGEq~Lyll~t~g~s~~V~L~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~-~~v~df~e-gpRN~~~ 318 (566)
T KOG2315|consen 241 DKTNASYYGEQTLYLLATQGESVSVPLLKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRG-KPVFDFPE-GPRNTAF 318 (566)
T ss_pred cCCCccccccceEEEEEecCceEEEecCCCCCceEEEECCCCCEEEEEEecccceEEEEcCCC-CEeEeCCC-CCccceE
Confidence 467777877555556666678899999999998876543 446799999874 44444333 3678899
Q ss_pred ECCCCCEEEEEeC---CCeEEEEecCCceeeeEEeeecCceeEEEECCCCCEEEEeeC------CCcEEEEecC
Q 026765 157 WNMTGEMFFLTTG---NGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSA------DSLVSLWDIS 221 (233)
Q Consensus 157 ~~~~~~~~~~~~~---~~~v~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~las~s~------dg~v~iwd~~ 221 (233)
|+|.|++++.++= .|.+.+||..+.+.+..+..-. .+-+.|+|||++|.|+.. |+.++||+..
T Consensus 319 fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a~~--tt~~eW~PdGe~flTATTaPRlrvdNg~Kiwhyt 390 (566)
T KOG2315|consen 319 FNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKFKAAN--TTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYT 390 (566)
T ss_pred ECCCCCEEEEeecCCCCCceEEEeccchhhccccccCC--ceEEEEcCCCcEEEEEeccccEEecCCeEEEEec
Confidence 9999999987753 5999999999888777765443 356789999999988773 6889999986
No 242
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.35 E-value=1.8e-10 Score=92.74 Aligned_cols=155 Identities=18% Similarity=0.188 Sum_probs=124.0
Q ss_pred CCCCEEEEEeCCCeEEEEECCCCeeeeeeee----cCCeeEEEE------C--------------CCCCeEEEEcCCCcE
Q 026765 77 KHADLIATASGDKTVRLWDARSGKCSQQAEL----SGENINITY------K--------------PDGTHIAVGNRDDEL 132 (233)
Q Consensus 77 ~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~----~~~~~~~~~------~--------------~~~~~l~~~~~d~~i 132 (233)
....++|....||.+++||...++..+.+.. .+...+..| + -+-..++.|...|.+
T Consensus 3 ~~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v 82 (541)
T KOG4547|consen 3 PALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSV 82 (541)
T ss_pred chhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccE
Confidence 3456788889999999999988876555443 122222211 1 233467889999999
Q ss_pred EEEEcCCCeeeeeee---cCceeeEEEECCCCCEEEEEeCCCeEEEEecCCceeeeEEeeecCceeEEEECCCCCEEEEe
Q 026765 133 TILDVRKFKPIHRRK---FGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVG 209 (233)
Q Consensus 133 ~i~d~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~las~ 209 (233)
.+|++..++...... +...++++.++.+-..+.++++|+.+..|+..+.+.+.........+.++.++||+..|++|
T Consensus 83 ~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~~~l~~a 162 (541)
T KOG4547|consen 83 LLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPDGKILLTA 162 (541)
T ss_pred EEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccCCCccceEEEcCCCCEEEec
Confidence 999998887765554 33468899999888999999999999999999888888888888889999999999999998
Q ss_pred eCCCcEEEEecCCcEEEEeeecCC
Q 026765 210 SADSLVSLWDISEMLCVRTFTKLE 233 (233)
Q Consensus 210 s~dg~v~iwd~~~~~~i~~~~~~~ 233 (233)
+ +.|++||+++++.+.+|.+|.
T Consensus 163 s--~~ik~~~~~~kevv~~ftgh~ 184 (541)
T KOG4547|consen 163 S--RQIKVLDIETKEVVITFTGHG 184 (541)
T ss_pred c--ceEEEEEccCceEEEEecCCC
Confidence 8 679999999999999999873
No 243
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.35 E-value=8.1e-11 Score=94.67 Aligned_cols=194 Identities=15% Similarity=0.306 Sum_probs=138.6
Q ss_pred EEEEECcCCCEEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeee
Q 026765 24 HSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQ 103 (233)
Q Consensus 24 ~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~ 103 (233)
..++++.-.--|..++....|.-.+++.+ +... .+.--..++.++..++.. .+|++|+.+|.|..||.+......
T Consensus 137 RDm~y~~~scDly~~gsg~evYRlNLEqG---rfL~-P~~~~~~~lN~v~in~~h-gLla~Gt~~g~VEfwDpR~ksrv~ 211 (703)
T KOG2321|consen 137 RDMKYHKPSCDLYLVGSGSEVYRLNLEQG---RFLN-PFETDSGELNVVSINEEH-GLLACGTEDGVVEFWDPRDKSRVG 211 (703)
T ss_pred ccccccCCCccEEEeecCcceEEEEcccc---cccc-ccccccccceeeeecCcc-ceEEecccCceEEEecchhhhhhe
Confidence 34455443333444554455555555432 2111 233344788899998875 588899999999999998876544
Q ss_pred eeeecC------------CeeEEEECCCCCeEEEEcCCCcEEEEEcCCCeeeeeeecC--ceeeEEEECCCCC-EEEEEe
Q 026765 104 QAELSG------------ENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFG--YEVNEIAWNMTGE-MFFLTT 168 (233)
Q Consensus 104 ~~~~~~------------~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~--~~~~~~~~~~~~~-~~~~~~ 168 (233)
.+.... .+.++.|+.+|-.+++|+.+|.+.|||++..+++....+. .++..+.|.+.+. --++..
T Consensus 212 ~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~~q~~v~S~ 291 (703)
T KOG2321|consen 212 TLDAASSVNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYELPIKKLDWQDTDQQNKVVSM 291 (703)
T ss_pred eeecccccCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecccCCccceeeecccccCCCceEEec
Confidence 433222 2567899999999999999999999999998888666554 5677888866543 345555
Q ss_pred CCCeEEEEecCCceeeeEEeeecCceeEEEECCCCCEEEEeeCCCcEEEEecCCc
Q 026765 169 GNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEM 223 (233)
Q Consensus 169 ~~~~v~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~las~s~dg~v~iwd~~~~ 223 (233)
....+++||..+++++..+..- ..++.+++-|++.++.+|-.++.+..|=+.+.
T Consensus 292 Dk~~~kiWd~~~Gk~~asiEpt-~~lND~C~~p~sGm~f~Ane~~~m~~yyiP~L 345 (703)
T KOG2321|consen 292 DKRILKIWDECTGKPMASIEPT-SDLNDFCFVPGSGMFFTANESSKMHTYYIPSL 345 (703)
T ss_pred chHHhhhcccccCCceeecccc-CCcCceeeecCCceEEEecCCCcceeEEcccc
Confidence 6678999999999888776643 34899999999999999999988877766543
No 244
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.34 E-value=3.7e-10 Score=91.00 Aligned_cols=188 Identities=14% Similarity=0.214 Sum_probs=136.7
Q ss_pred CcCCCEEEEEeCCCCEEEEecccCCCCceeeEEEe--cC-cCcEEEEEEc------C-------------CCCCEEEEEe
Q 026765 29 NCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELR--GH-ADSVDQLCWD------P-------------KHADLIATAS 86 (233)
Q Consensus 29 ~~~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~--~h-~~~v~~~~~~------~-------------~~~~~l~sg~ 86 (233)
.|...++|....||.+|||+..... ...++. .| ++...+..|. | .+...++=|.
T Consensus 2 ~~~~~~~A~~~~~g~l~iw~t~~~~----~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt 77 (541)
T KOG4547|consen 2 PPALDYFALSTGDGRLRIWDTAKNQ----LQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGT 77 (541)
T ss_pred CchhheEeecCCCCeEEEEEccCce----eeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeec
Confidence 4567889999999999999985422 111111 11 1222333332 1 2345677888
Q ss_pred CCCeEEEEECCCCeeeeeeee---cCCeeEEEECCCCCeEEEEcCCCcEEEEEcCCCeeeeeeec-CceeeEEEECCCCC
Q 026765 87 GDKTVRLWDARSGKCSQQAEL---SGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKF-GYEVNEIAWNMTGE 162 (233)
Q Consensus 87 ~d~~i~iwd~~~~~~~~~~~~---~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~-~~~~~~~~~~~~~~ 162 (233)
..|.|.+|++..++....+.. .+.+.++.++.+-..|.+++.|..+..|+....+.+...+. ...+..++.+||++
T Consensus 78 ~~g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~~~~sl~is~D~~ 157 (541)
T KOG4547|consen 78 PQGSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEKVIIRIWKEQKPLVSSLCISPDGK 157 (541)
T ss_pred CCccEEEEEecCCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEecccceeeeeeccCCCccceEEEcCCCC
Confidence 899999999999987776653 23445566677778899999999999999876665544332 34577889999998
Q ss_pred EEEEEeCCCeEEEEecCCceeeeEEeeecCceeEEEECCC-----CCE-EEEeeCCCcEEEEecCC
Q 026765 163 MFFLTTGNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPM-----GRY-FAVGSADSLVSLWDISE 222 (233)
Q Consensus 163 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~i~~~p~-----~~~-las~s~dg~v~iwd~~~ 222 (233)
.+++++ +++++|+.++.+.+..|.+|.++|.+++|.-+ |.+ |.++..+..+.+|-+..
T Consensus 158 ~l~~as--~~ik~~~~~~kevv~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 158 ILLTAS--RQIKVLDIETKEVVITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVVEK 221 (541)
T ss_pred EEEecc--ceEEEEEccCceEEEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEEEc
Confidence 877765 67999999999999999999999999998766 555 55666778899997653
No 245
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.31 E-value=1.5e-09 Score=89.23 Aligned_cols=163 Identities=15% Similarity=0.196 Sum_probs=104.5
Q ss_pred EecCcCcEEEEEEcCCCCCEEEEEeCC--CeEEEEECCCCeeeeeeeecCCeeEEEECCCCCeEEE-EcCCC--cEEEEE
Q 026765 62 LRGHADSVDQLCWDPKHADLIATASGD--KTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAV-GNRDD--ELTILD 136 (233)
Q Consensus 62 ~~~h~~~v~~~~~~~~~~~~l~sg~~d--~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~d~--~i~i~d 136 (233)
+..+...+....|+|++..++++...+ ..|.+||+.+++........+......|+|||+.++. ...++ .|.++|
T Consensus 194 l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~l~~~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d 273 (430)
T PRK00178 194 LLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQITNFEGLNGAPAWSPDGSKLAFVLSKDGNPEIYVMD 273 (430)
T ss_pred EecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEEccCCCCCcCCeEECCCCCEEEEEEccCCCceEEEEE
Confidence 445667889999999986555544333 3688899988765443333344456899999998874 44444 577889
Q ss_pred cCCCeeeeeeecCceeeEEEECCCCCEEEEEeC-CC--eEEEEecCCceeeeEEeeecCceeEEEECCCCCEEEEeeCC-
Q 026765 137 VRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTG-NG--TVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSAD- 212 (233)
Q Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~v~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~las~s~d- 212 (233)
+.+.+...............|+|+|+.++..+. ++ .+.+++..+++.. .+..........+|+|+|++|+..+.+
T Consensus 274 ~~~~~~~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~~~iy~~d~~~g~~~-~lt~~~~~~~~~~~Spdg~~i~~~~~~~ 352 (430)
T PRK00178 274 LASRQLSRVTNHPAIDTEPFWGKDGRTLYFTSDRGGKPQIYKVNVNGGRAE-RVTFVGNYNARPRLSADGKTLVMVHRQD 352 (430)
T ss_pred CCCCCeEEcccCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECCCCCEE-EeecCCCCccceEECCCCCEEEEEEccC
Confidence 876544322222223456789999998876653 33 5666666555432 222222223456899999998877643
Q ss_pred C--cEEEEecCCcEE
Q 026765 213 S--LVSLWDISEMLC 225 (233)
Q Consensus 213 g--~v~iwd~~~~~~ 225 (233)
+ .|.+||+.+++.
T Consensus 353 ~~~~l~~~dl~tg~~ 367 (430)
T PRK00178 353 GNFHVAAQDLQRGSV 367 (430)
T ss_pred CceEEEEEECCCCCE
Confidence 3 488899987654
No 246
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.29 E-value=3e-08 Score=79.22 Aligned_cols=199 Identities=18% Similarity=0.293 Sum_probs=126.3
Q ss_pred cEEEEEECcCCCEEEEEeC----CCCEEEEecccCCCCceeeE-EEecCcCcEEEEEEcCCCCCEEEEEeCCCeEEEEEC
Q 026765 22 KVHSVAWNCTGTKLASGSV----DQTARVWHIEPHGHGKVKDI-ELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDA 96 (233)
Q Consensus 22 ~V~~~~~~~~~~~l~s~~~----D~~v~vW~~~~~~~~~~~~~-~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~iwd~ 96 (233)
.-.-++++|++++|.+... ++.|..|.+.... +.+..+ +..........++++|++..++++--.++.|.++++
T Consensus 38 ~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~-g~L~~~~~~~~~g~~p~~i~~~~~g~~l~vany~~g~v~v~~l 116 (345)
T PF10282_consen 38 NPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDT-GTLTLLNSVPSGGSSPCHIAVDPDGRFLYVANYGGGSVSVFPL 116 (345)
T ss_dssp SECCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTT-TEEEEEEEEEESSSCEEEEEECTTSSEEEEEETTTTEEEEEEE
T ss_pred CCceEEEEeCCCEEEEEEccccCCCCEEEEEECCCc-ceeEEeeeeccCCCCcEEEEEecCCCEEEEEEccCCeEEEEEc
Confidence 3456778999999988866 5789999887642 222111 222233444568889987555444446899999999
Q ss_pred CC-Ceeeee---eee-----------cCCeeEEEECCCCCeEEEEc-CCCcEEEEEcCCCe--ee--e--eeecCceeeE
Q 026765 97 RS-GKCSQQ---AEL-----------SGENINITYKPDGTHIAVGN-RDDELTILDVRKFK--PI--H--RRKFGYEVNE 154 (233)
Q Consensus 97 ~~-~~~~~~---~~~-----------~~~~~~~~~~~~~~~l~~~~-~d~~i~i~d~~~~~--~~--~--~~~~~~~~~~ 154 (233)
.. +..... ... ....-.+.++|+++++++.. ....|.+|++.... .. . ....+.....
T Consensus 117 ~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh 196 (345)
T PF10282_consen 117 DDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRH 196 (345)
T ss_dssp CTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEE
T ss_pred cCCcccceeeeecccCCCCCcccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcE
Confidence 76 333221 111 12234689999999887754 34679999986543 21 1 2234566889
Q ss_pred EEECCCCCEEEEEeC-CCeEEEEecC--Cc--eeeeEEeee------cCceeEEEECCCCCEEEEee-CCCcEEEEecC
Q 026765 155 IAWNMTGEMFFLTTG-NGTVEVLTYP--SL--RPLDTVVAH------TAGCYCIAIDPMGRYFAVGS-ADSLVSLWDIS 221 (233)
Q Consensus 155 ~~~~~~~~~~~~~~~-~~~v~~~~~~--~~--~~~~~~~~~------~~~v~~i~~~p~~~~las~s-~dg~v~iwd~~ 221 (233)
+.|+|+++++.+..+ ++.|.++++. .+ +.+..+... ......|+++|+|++|.++. .+..|.+|+++
T Consensus 197 ~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d 275 (345)
T PF10282_consen 197 LAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLD 275 (345)
T ss_dssp EEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEEC
T ss_pred EEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEe
Confidence 999999998877765 7889999887 33 222222211 12467899999999876655 56789999993
No 247
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.28 E-value=2.3e-08 Score=78.83 Aligned_cols=200 Identities=13% Similarity=0.100 Sum_probs=130.5
Q ss_pred ECcCCCEEEEEeC----------CCCEEEEecccCCCCceeeEEEecC-----cCcEEEEEEcCCCCCEEEEEeC-CCeE
Q 026765 28 WNCTGTKLASGSV----------DQTARVWHIEPHGHGKVKDIELRGH-----ADSVDQLCWDPKHADLIATASG-DKTV 91 (233)
Q Consensus 28 ~~~~~~~l~s~~~----------D~~v~vW~~~~~~~~~~~~~~~~~h-----~~~v~~~~~~~~~~~~l~sg~~-d~~i 91 (233)
++||++.|..+.. +..|.|||+.+.. .+..+.++.. ...-..++++|++..++++--. +..|
T Consensus 53 ~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~--~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V 130 (352)
T TIGR02658 53 VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHL--PIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAV 130 (352)
T ss_pred ECCCCCEEEEEeccccccccCCCCCEEEEEECccCc--EEeEEccCCCchhhccCccceEEECCCCCEEEEecCCCCCEE
Confidence 8899998877765 7899999987532 2233333211 1223467889987544444424 7889
Q ss_pred EEEECCCCeeeeeeeecCC-------------------e-------------eE--E------------EECC-CCCeEE
Q 026765 92 RLWDARSGKCSQQAELSGE-------------------N-------------IN--I------------TYKP-DGTHIA 124 (233)
Q Consensus 92 ~iwd~~~~~~~~~~~~~~~-------------------~-------------~~--~------------~~~~-~~~~l~ 124 (233)
.+.|+.+++...+....+. . .. + .|.+ +++++.
T Consensus 131 ~VvD~~~~kvv~ei~vp~~~~vy~t~e~~~~~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~~~~ 210 (352)
T TIGR02658 131 GVVDLEGKAFVRMMDVPDCYHIFPTANDTFFMHCRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHPAYSNKSGRLVW 210 (352)
T ss_pred EEEECCCCcEEEEEeCCCCcEEEEecCCccEEEeecCceEEEEecCCCceEEeeeeeecCCccccccCCceEcCCCcEEE
Confidence 9999987764433221110 0 00 1 1122 677777
Q ss_pred EEcCCCcEEEEEcCCCee-----eeeeec--------CceeeEEEECCCCCEEEEEe----------CCCeEEEEecCCc
Q 026765 125 VGNRDDELTILDVRKFKP-----IHRRKF--------GYEVNEIAWNMTGEMFFLTT----------GNGTVEVLTYPSL 181 (233)
Q Consensus 125 ~~~~d~~i~i~d~~~~~~-----~~~~~~--------~~~~~~~~~~~~~~~~~~~~----------~~~~v~~~~~~~~ 181 (233)
+..+ |.+.+.|+..... ...... ...+..++++++++.+.+.. ..+.+.++|..+.
T Consensus 211 vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~ 289 (352)
T TIGR02658 211 PTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTG 289 (352)
T ss_pred EecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCC
Confidence 6666 8888888643221 111111 11233489999999888742 2358999999999
Q ss_pred eeeeEEeeecCceeEEEECCCCC-EEEEee-CCCcEEEEecCCcEEEEeeec
Q 026765 182 RPLDTVVAHTAGCYCIAIDPMGR-YFAVGS-ADSLVSLWDISEMLCVRTFTK 231 (233)
Q Consensus 182 ~~~~~~~~~~~~v~~i~~~p~~~-~las~s-~dg~v~iwd~~~~~~i~~~~~ 231 (233)
+.+..+.. ...+..++++||++ +|.+.. .++.|.|.|+.+++.++++.+
T Consensus 290 kvi~~i~v-G~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~i~~i~~ 340 (352)
T TIGR02658 290 KRLRKIEL-GHEIDSINVSQDAKPLLYALSTGDKTLYIFDAETGKELSSVNQ 340 (352)
T ss_pred eEEEEEeC-CCceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeEEeeecc
Confidence 98887764 45788999999999 777665 578899999999999998743
No 248
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.28 E-value=2.6e-09 Score=88.05 Aligned_cols=162 Identities=14% Similarity=0.218 Sum_probs=102.2
Q ss_pred ecCcCcEEEEEEcCCCCCEEEEEeCCC--eEEEEECCCCeeeeeeeecCCeeEEEECCCCCeEEE-EcCCCc--EEEEEc
Q 026765 63 RGHADSVDQLCWDPKHADLIATASGDK--TVRLWDARSGKCSQQAELSGENINITYKPDGTHIAV-GNRDDE--LTILDV 137 (233)
Q Consensus 63 ~~h~~~v~~~~~~~~~~~~l~sg~~d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~d~~--i~i~d~ 137 (233)
..+...+....|+|++..++++...++ .|.+||+.+++........+......|+|||+.|+. ...++. |.++|+
T Consensus 214 ~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~~dl 293 (448)
T PRK04792 214 LRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREKVTSFPGINGAPRFSPDGKKLALVLSKDGQPEIYVVDI 293 (448)
T ss_pred ecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEEecCCCCCcCCeeECCCCCEEEEEEeCCCCeEEEEEEC
Confidence 345667888999999876655544443 578889987765433333444456899999998875 445554 777787
Q ss_pred CCCeeeeeeecCceeeEEEECCCCCEEEEEeC-CC--eEEEEecCCceeeeEEeeecCceeEEEECCCCCEEEEeeC-CC
Q 026765 138 RKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTG-NG--TVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSA-DS 213 (233)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~v~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~las~s~-dg 213 (233)
.+.+...............|+|+|+.++..+. ++ .+.+++..+++. ..+..........+|+|+|++|+..+. ++
T Consensus 294 ~tg~~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~-~~Lt~~g~~~~~~~~SpDG~~l~~~~~~~g 372 (448)
T PRK04792 294 ATKALTRITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKV-SRLTFEGEQNLGGSITPDGRSMIMVNRTNG 372 (448)
T ss_pred CCCCeEECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCE-EEEecCCCCCcCeeECCCCCEEEEEEecCC
Confidence 76544322222234566789999998876653 33 455556655543 223222223345789999999877655 34
Q ss_pred --cEEEEecCCcEE
Q 026765 214 --LVSLWDISEMLC 225 (233)
Q Consensus 214 --~v~iwd~~~~~~ 225 (233)
.|.++|+.++..
T Consensus 373 ~~~I~~~dl~~g~~ 386 (448)
T PRK04792 373 KFNIARQDLETGAM 386 (448)
T ss_pred ceEEEEEECCCCCe
Confidence 355577776653
No 249
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.28 E-value=5e-10 Score=85.14 Aligned_cols=201 Identities=13% Similarity=0.299 Sum_probs=136.2
Q ss_pred cccEEEEEECcCCC--EEEEEeCCCCEEEEecccCCCCc-------------eeeE-------------------EEecC
Q 026765 20 KKKVHSVAWNCTGT--KLASGSVDQTARVWHIEPHGHGK-------------VKDI-------------------ELRGH 65 (233)
Q Consensus 20 ~~~V~~~~~~~~~~--~l~s~~~D~~v~vW~~~~~~~~~-------------~~~~-------------------~~~~h 65 (233)
...|+.+.|.++++ .++....|++|++|-+....... +..+ --.+|
T Consensus 84 eEKinkIrw~~~~n~a~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaH 163 (433)
T KOG1354|consen 84 EEKINKIRWLDDGNLAEFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAH 163 (433)
T ss_pred hhhhhhceecCCCCccEEEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccc
Confidence 56789999998764 46666789999999875322111 0000 01368
Q ss_pred cCcEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeee-eecC--------CeeEEEECCCC-CeEEEEcCCCcEEEE
Q 026765 66 ADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQA-ELSG--------ENINITYKPDG-THIAVGNRDDELTIL 135 (233)
Q Consensus 66 ~~~v~~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~-~~~~--------~~~~~~~~~~~-~~l~~~~~d~~i~i~ 135 (233)
+..|.++.++.+.. .++| +.|=.|.+|++.-....... .... -+.+..|+|.. +.++-.+..|.|++-
T Consensus 164 tyhiNSIS~NsD~E-t~lS-ADdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLc 241 (433)
T KOG1354|consen 164 TYHINSISVNSDKE-TFLS-ADDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLC 241 (433)
T ss_pred eeEeeeeeecCccc-eEee-ccceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEe
Confidence 88899999987754 4445 46778999998644321111 1111 12346788864 566677788999999
Q ss_pred EcCCCee------eeeeec-----------CceeeEEEECCCCCEEEEEeCCCeEEEEec-CCceeeeEEeeec------
Q 026765 136 DVRKFKP------IHRRKF-----------GYEVNEIAWNMTGEMFFLTTGNGTVEVLTY-PSLRPLDTVVAHT------ 191 (233)
Q Consensus 136 d~~~~~~------~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~~~~~~~~------ 191 (233)
|||.... +...+. -..|..+.|+.+|+++++-+-- ++++||. ...+++.++..|.
T Consensus 242 DmR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRDyl-tvk~wD~nme~~pv~t~~vh~~lr~kL 320 (433)
T KOG1354|consen 242 DMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDYL-TVKLWDLNMEAKPVETYPVHEYLRSKL 320 (433)
T ss_pred echhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEeccc-eeEEEeccccCCcceEEeehHhHHHHH
Confidence 9984221 100000 0246788999999998877544 8999998 4567777777664
Q ss_pred ------Cce---eEEEECCCCCEEEEeeCCCcEEEEecCCc
Q 026765 192 ------AGC---YCIAIDPMGRYFAVGSADSLVSLWDISEM 223 (233)
Q Consensus 192 ------~~v---~~i~~~p~~~~las~s~dg~v~iwd~~~~ 223 (233)
..| ..++|+.++.+++|||.....++|+++.|
T Consensus 321 c~lYEnD~IfdKFec~~sg~~~~v~TGsy~n~frvf~~~~g 361 (433)
T KOG1354|consen 321 CSLYENDAIFDKFECSWSGNDSYVMTGSYNNVFRVFNLARG 361 (433)
T ss_pred HHHhhccchhheeEEEEcCCcceEecccccceEEEecCCCC
Confidence 223 46899999999999999999999997766
No 250
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.27 E-value=7.5e-09 Score=93.06 Aligned_cols=199 Identities=16% Similarity=0.230 Sum_probs=132.8
Q ss_pred EEEEEECcCCCEEEEEe-CCCCEEEEecccCCCCceeeEEEecC---------------cCcEEEEEEcCCCCCEEEEEe
Q 026765 23 VHSVAWNCTGTKLASGS-VDQTARVWHIEPHGHGKVKDIELRGH---------------ADSVDQLCWDPKHADLIATAS 86 (233)
Q Consensus 23 V~~~~~~~~~~~l~s~~-~D~~v~vW~~~~~~~~~~~~~~~~~h---------------~~~v~~~~~~~~~~~~l~sg~ 86 (233)
-..++++++++.|..+. ..+.|+++|.... .+..+.-.+. -..-..++++|+++.++++..
T Consensus 626 P~GIavd~~gn~LYVaDt~n~~Ir~id~~~~---~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~ 702 (1057)
T PLN02919 626 PQGLAYNAKKNLLYVADTENHALREIDFVNE---TVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMA 702 (1057)
T ss_pred CcEEEEeCCCCEEEEEeCCCceEEEEecCCC---EEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEEC
Confidence 46788888888665554 4567888886431 1111100000 012357899997677888888
Q ss_pred CCCeEEEEECCCCeeeeeee------e---------cCCeeEEEECCCCCeEE-EEcCCCcEEEEEcCCCeeeeee----
Q 026765 87 GDKTVRLWDARSGKCSQQAE------L---------SGENINITYKPDGTHIA-VGNRDDELTILDVRKFKPIHRR---- 146 (233)
Q Consensus 87 ~d~~i~iwd~~~~~~~~~~~------~---------~~~~~~~~~~~~~~~l~-~~~~d~~i~i~d~~~~~~~~~~---- 146 (233)
.++.|++||..++....... . -..+..++++|++.+|+ +...++.|++||+.+.......
T Consensus 703 ~~~~I~v~d~~~g~v~~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~ 782 (1057)
T PLN02919 703 GQHQIWEYNISDGVTRVFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDP 782 (1057)
T ss_pred CCCeEEEEECCCCeEEEEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEeccc
Confidence 89999999987765421100 0 01234588999998554 5566789999998764321100
Q ss_pred -------ec-----------CceeeEEEECCCCCEEEEEeCCCeEEEEecCCceeeeEEeee--------------cCce
Q 026765 147 -------KF-----------GYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAH--------------TAGC 194 (233)
Q Consensus 147 -------~~-----------~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~--------------~~~v 194 (233)
.. ......++++++|+.+++-..++.|++||..++... .+.+. -...
T Consensus 783 ~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~-tiaG~G~~G~~dG~~~~a~l~~P 861 (1057)
T PLN02919 783 TFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVT-TLAGTGKAGFKDGKALKAQLSEP 861 (1057)
T ss_pred ccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEE-EEeccCCcCCCCCcccccccCCc
Confidence 00 012457889999998888899999999998765443 22221 1246
Q ss_pred eEEEECCCCCEEEEeeCCCcEEEEecCCcEE
Q 026765 195 YCIAIDPMGRYFAVGSADSLVSLWDISEMLC 225 (233)
Q Consensus 195 ~~i~~~p~~~~las~s~dg~v~iwd~~~~~~ 225 (233)
..++++++|+.+++-+.++.|++||++++..
T Consensus 862 ~GIavd~dG~lyVaDt~Nn~Irvid~~~~~~ 892 (1057)
T PLN02919 862 AGLALGENGRLFVADTNNSLIRYLDLNKGEA 892 (1057)
T ss_pred eEEEEeCCCCEEEEECCCCEEEEEECCCCcc
Confidence 7899999999999999999999999998765
No 251
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.24 E-value=3.1e-10 Score=96.80 Aligned_cols=190 Identities=15% Similarity=0.128 Sum_probs=136.2
Q ss_pred EEECcCCCEEEEEeCCCCEEEEecccCCCCceeeEEEecCcC----cEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCee
Q 026765 26 VAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHAD----SVDQLCWDPKHADLIATASGDKTVRLWDARSGKC 101 (233)
Q Consensus 26 ~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~----~v~~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~ 101 (233)
..+..+.++++.+..++.+-+||..... +.. ++.+... ...-+-++++ .-.+++|+--+.|.+|+......
T Consensus 93 ~~l~~e~k~i~l~~~~ns~~i~d~~~~~---~~~-~i~~~er~~l~~~~~~g~s~~-~~~i~~gsv~~~iivW~~~~dn~ 167 (967)
T KOG0974|consen 93 AKLFEENKKIALVTSRNSLLIRDSKNSS---VLS-KIQSDERCTLYSSLIIGDSAE-ELYIASGSVFGEIIVWKPHEDNK 167 (967)
T ss_pred cchhhhcceEEEEEcCceEEEEecccCc---eeh-hcCCCceEEEEeEEEEeccCc-EEEEEeccccccEEEEeccccCC
Confidence 4455567889999999999999975321 111 1111111 1111122332 34678999999999999874333
Q ss_pred ee-eeeecCCeeEEEECCCCCeEEEEcCCCcEEEEEcCCCeeeeee--ecCceeeEEEECCCCCEEEEEeCCCeEEEEec
Q 026765 102 SQ-QAELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRR--KFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTY 178 (233)
Q Consensus 102 ~~-~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 178 (233)
.. ..-+.+.++.+.++.||+++++.+.|..+++|++++.+..... .+...+..+.+.++ .+++++.|.+.++|+.
T Consensus 168 p~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~~~fgHsaRvw~~~~~~n--~i~t~gedctcrvW~~ 245 (967)
T KOG0974|consen 168 PIRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGCTGFGHSARVWACCFLPN--RIITVGEDCTCRVWGV 245 (967)
T ss_pred cceecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCcccccccceeEEEEeccc--eeEEeccceEEEEEec
Confidence 22 3334567788999999999999999999999999887655422 23445677777776 9999999999999976
Q ss_pred CCceeeeEEeeec-CceeEEEECCCCCEEEEeeCCCcEEEEecCCc
Q 026765 179 PSLRPLDTVVAHT-AGCYCIAIDPMGRYFAVGSADSLVSLWDISEM 223 (233)
Q Consensus 179 ~~~~~~~~~~~~~-~~v~~i~~~p~~~~las~s~dg~v~iwd~~~~ 223 (233)
.. +....+..|. ..+..++..+....++|++.|+.+++|++...
T Consensus 246 ~~-~~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~r 290 (967)
T KOG0974|consen 246 NG-TQLEVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNGR 290 (967)
T ss_pred cc-ceehhhhhhhhcceeEEEEcCCceEEEeeccCcchhhhhhhcc
Confidence 43 3334666675 46889999999899999999999999998743
No 252
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.24 E-value=7.6e-11 Score=105.48 Aligned_cols=197 Identities=16% Similarity=0.250 Sum_probs=138.8
Q ss_pred eeCccccEEEEEECcCCCEEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCCeEEEEE
Q 026765 16 YTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWD 95 (233)
Q Consensus 16 ~~~H~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~iwd 95 (233)
...|-..|.++.=+|...+-+||+.||.|++|..... ..+......|. ..|+.+.|+.+|.+ +..+..||.+.+|.
T Consensus 2204 ~k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~--~~v~~~rt~g~-s~vtr~~f~~qGnk-~~i~d~dg~l~l~q 2279 (2439)
T KOG1064|consen 2204 IKHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHG--QQVVCFRTAGN-SRVTRSRFNHQGNK-FGIVDGDGDLSLWQ 2279 (2439)
T ss_pred eecccCceeeecCCCCCceEEecCCCceEEEEeccCC--CeEEEeeccCc-chhhhhhhcccCCc-eeeeccCCceeecc
Confidence 3445667888888888899999999999999986432 22333334444 77888999888765 45678899999998
Q ss_pred CCCCeeeeeeeec-CCeeEEEECCCCCeEEEEc---CCCcEEEEEcCC---CeeeeeeecCceeeEEEECCCCCEEEEEe
Q 026765 96 ARSGKCSQQAELS-GENINITYKPDGTHIAVGN---RDDELTILDVRK---FKPIHRRKFGYEVNEIAWNMTGEMFFLTT 168 (233)
Q Consensus 96 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~---~d~~i~i~d~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (233)
... +.......+ .....+.|-. ..+++.+ .++.+.+||... ...++ ..+...++++++-|..+.+++|+
T Consensus 2280 ~~p-k~~~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~v~-~~H~~gaT~l~~~P~~qllisgg 2355 (2439)
T KOG1064|consen 2280 ASP-KPYTSWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSLVH-TCHDGGATVLAYAPKHQLLISGG 2355 (2439)
T ss_pred cCC-cceeccccCCccccceeeee--hhhhccccCCCCCcccchhcccCcccceee-eecCCCceEEEEcCcceEEEecC
Confidence 862 222222222 1122344432 3444443 357899999532 12233 44566789999999999999999
Q ss_pred CCCeEEEEecCCceeeeEEeeecCceeEEEECCCCCEEEEeeCCCcEEEEecCCcEEEEeee
Q 026765 169 GNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFT 230 (233)
Q Consensus 169 ~~~~v~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~las~s~dg~v~iwd~~~~~~i~~~~ 230 (233)
.+|.+.+||.+..+....+.. ++ ...++++|+..|.++||++.+-..+++|+
T Consensus 2356 r~G~v~l~D~rqrql~h~~~~---------~~-~~~~f~~~ss~g~ikIw~~s~~~ll~~~p 2407 (2439)
T KOG1064|consen 2356 RKGEVCLFDIRQRQLRHTFQA---------LD-TREYFVTGSSEGNIKIWRLSEFGLLHTFP 2407 (2439)
T ss_pred CcCcEEEeehHHHHHHHHhhh---------hh-hhheeeccCcccceEEEEccccchhhcCc
Confidence 999999999987665544332 44 56789999999999999999887787775
No 253
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=99.23 E-value=3.1e-10 Score=87.60 Aligned_cols=156 Identities=16% Similarity=0.207 Sum_probs=106.6
Q ss_pred EEcCCCCCEEEEEeCCCeEEEEECCCCee----eeeeeecCCeeEEEECCCCCeEEEEcCC---CcEEEEEcCCCeeeee
Q 026765 73 CWDPKHADLIATASGDKTVRLWDARSGKC----SQQAELSGENINITYKPDGTHIAVGNRD---DELTILDVRKFKPIHR 145 (233)
Q Consensus 73 ~~~~~~~~~l~sg~~d~~i~iwd~~~~~~----~~~~~~~~~~~~~~~~~~~~~l~~~~~d---~~i~i~d~~~~~~~~~ 145 (233)
..++ ++.+++.+..++...+++.+.... .....+......+.+..+.....++..- ..+.+|....+.....
T Consensus 69 ~~s~-~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~~~~~~~~~ 147 (390)
T KOG3914|consen 69 LTSD-SGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCVPKRPTAISFIREDTSVLVADKAGDVYSFDILSADSGRCEPI 147 (390)
T ss_pred ccCC-CceEEEEEeCCCceEEEEEecCCCcceeeeEeecccCcceeeeeeccceEEEEeecCCceeeeeecccccCcchh
Confidence 3444 467888888888877777654432 2222333334455555555554444333 3344444433333222
Q ss_pred eecCceeeEEEECCCCCEEEEEeCCCeEEEEecCCceeeeEE-eeecCceeEEEECCCCCEEEEeeCCCcEEEEecCCcE
Q 026765 146 RKFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTV-VAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEML 224 (233)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~~~~~~v~~i~~~p~~~~las~s~dg~v~iwd~~~~~ 224 (233)
.-+-..+..++|+||++.++++..|..|++-.++..-.+..+ .||..-|..++.-++ +.|++||.|+++++||+.+|.
T Consensus 148 lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~-~~LlS~sGD~tlr~Wd~~sgk 226 (390)
T KOG3914|consen 148 LGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDN-YLLLSGSGDKTLRLWDITSGK 226 (390)
T ss_pred hhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccC-ceeeecCCCCcEEEEecccCC
Confidence 223345789999999999999999999999988765555554 479999999999764 568999999999999999999
Q ss_pred EEEeee
Q 026765 225 CVRTFT 230 (233)
Q Consensus 225 ~i~~~~ 230 (233)
++.+|.
T Consensus 227 ~L~t~d 232 (390)
T KOG3914|consen 227 LLDTCD 232 (390)
T ss_pred cccccc
Confidence 887764
No 254
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.22 E-value=5e-09 Score=85.85 Aligned_cols=183 Identities=11% Similarity=0.137 Sum_probs=107.0
Q ss_pred ccccEEEEEECcCCCEEEEEeC-CC----CEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCCeEEE
Q 026765 19 HKKKVHSVAWNCTGTKLASGSV-DQ----TARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRL 93 (233)
Q Consensus 19 H~~~V~~~~~~~~~~~l~s~~~-D~----~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~i 93 (233)
..+.....+|+|||++|+..+. ++ .+.+|++.....+....+ ..++.......+|+|++..++++...++...+
T Consensus 229 ~~g~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~l-t~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~l 307 (428)
T PRK01029 229 LQGNQLMPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRL-LNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRI 307 (428)
T ss_pred CCCCccceEECCCCCEEEEEECCCCCcceeEEEeecccCCCCcceEe-ecCCCCCcCCeEECCCCCEEEEEECCCCCceE
Confidence 3445567899999998876542 23 344466543211121211 22222344567999998766666656776666
Q ss_pred EE--CCC-Ceeeeeeee-cCCeeEEEECCCCCeEEEEcCC---CcEEEEEcCCCeeeeeeecCceeeEEEECCCCCEEEE
Q 026765 94 WD--ARS-GKCSQQAEL-SGENINITYKPDGTHIAVGNRD---DELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFL 166 (233)
Q Consensus 94 wd--~~~-~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~d---~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (233)
|. +.. +.....+.. ........|+|||++|+....+ ..|.+||+.+.+..........+....|+|+|+.++.
T Consensus 308 y~~~~~~~g~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~Lt~~~~~~~~p~wSpDG~~L~f 387 (428)
T PRK01029 308 YIMQIDPEGQSPRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQLTTSPENKESPSWAIDSLHLVY 387 (428)
T ss_pred EEEECcccccceEEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEEccCCCCCccceEECCCCCEEEE
Confidence 64 432 222222222 2334568899999998865543 3588999877654332222234567899999998876
Q ss_pred EeC---CCeEEEEecCCceeeeEEeeecCceeEEEECCCC
Q 026765 167 TTG---NGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMG 203 (233)
Q Consensus 167 ~~~---~~~v~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~ 203 (233)
... ...+.+++...++.. .+....+.+...+|+|..
T Consensus 388 ~~~~~g~~~L~~vdl~~g~~~-~Lt~~~g~~~~p~Ws~~~ 426 (428)
T PRK01029 388 SAGNSNESELYLISLITKKTR-KIVIGSGEKRFPSWGAFP 426 (428)
T ss_pred EECCCCCceEEEEECCCCCEE-EeecCCCcccCceecCCC
Confidence 543 356777777665443 333334445667788753
No 255
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.21 E-value=1e-10 Score=104.72 Aligned_cols=167 Identities=18% Similarity=0.299 Sum_probs=122.5
Q ss_pred EEecCcCcEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeeeeecC--CeeEEEECCCCCeEEEEcCCCcEEEEEcC
Q 026765 61 ELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSG--ENINITYKPDGTHIAVGNRDDELTILDVR 138 (233)
Q Consensus 61 ~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~d~~i~i~d~~ 138 (233)
.++.+...|.++.-||..+.+ ++|+.||.+++|....++.+..+...+ .+..+.|+.+|+.+..+..||.+.+|...
T Consensus 2203 ~~k~~v~~v~r~~sHp~~~~Y-ltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~l~l~q~~ 2281 (2439)
T KOG1064|consen 2203 MIKHPVENVRRMTSHPSDPYY-LTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGDLSLWQAS 2281 (2439)
T ss_pred EeecccCceeeecCCCCCceE-EecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccCCceeeeccCCceeecccC
Confidence 455567788888889987755 599999999999988877666555433 34457899999999999999999999875
Q ss_pred CCeeeeeee-cCceeeEEEECCCCCEEEEEe---CCCeEEEEecC--CceeeeEEeeecCceeEEEECCCCCEEEEeeCC
Q 026765 139 KFKPIHRRK-FGYEVNEIAWNMTGEMFFLTT---GNGTVEVLTYP--SLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSAD 212 (233)
Q Consensus 139 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~---~~~~v~~~~~~--~~~~~~~~~~~~~~v~~i~~~p~~~~las~s~d 212 (233)
.++....+ +......+.| -+..++.++ .++.+.+||.. .....-. ..|.++++++++-|..+.|++|+.+
T Consensus 2282 -pk~~~s~qchnk~~~Df~F--i~s~~~tag~s~d~~n~~lwDtl~~~~~s~v~-~~H~~gaT~l~~~P~~qllisggr~ 2357 (2439)
T KOG1064|consen 2282 -PKPYTSWQCHNKALSDFRF--IGSLLATAGRSSDNRNVCLWDTLLPPMNSLVH-TCHDGGATVLAYAPKHQLLISGGRK 2357 (2439)
T ss_pred -CcceeccccCCccccceee--eehhhhccccCCCCCcccchhcccCcccceee-eecCCCceEEEEcCcceEEEecCCc
Confidence 23322222 2222333333 223344332 47889999863 2222222 7899999999999999999999999
Q ss_pred CcEEEEecCCcEEEEeeecC
Q 026765 213 SLVSLWDISEMLCVRTFTKL 232 (233)
Q Consensus 213 g~v~iwd~~~~~~i~~~~~~ 232 (233)
|.|++||+++...+++|+.+
T Consensus 2358 G~v~l~D~rqrql~h~~~~~ 2377 (2439)
T KOG1064|consen 2358 GEVCLFDIRQRQLRHTFQAL 2377 (2439)
T ss_pred CcEEEeehHHHHHHHHhhhh
Confidence 99999999999988888764
No 256
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.20 E-value=1.9e-10 Score=97.97 Aligned_cols=118 Identities=24% Similarity=0.313 Sum_probs=96.3
Q ss_pred eeeCccccEEEEEECcCCCEEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCCeEEEE
Q 026765 15 EYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLW 94 (233)
Q Consensus 15 ~~~~H~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~iw 94 (233)
.+.||.+.|..+.|+.+|.+++|.|.|+++|+|+++...... ....+|+..|-.++|+|+ .+++++.|.+.++|
T Consensus 170 ~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~---~~~fgHsaRvw~~~~~~n---~i~t~gedctcrvW 243 (967)
T KOG0974|consen 170 RLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLG---CTGFGHSARVWACCFLPN---RIITVGEDCTCRVW 243 (967)
T ss_pred eecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccC---cccccccceeEEEEeccc---eeEEeccceEEEEE
Confidence 578999999999999999999999999999999998654332 235589999999999986 68899999999999
Q ss_pred ECCCCeeeeeee-ecCCeeEEEECCCCCeEEEEcCCCcEEEEEcC
Q 026765 95 DARSGKCSQQAE-LSGENINITYKPDGTHIAVGNRDDELTILDVR 138 (233)
Q Consensus 95 d~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~ 138 (233)
+....+...... .......++..++...+++++.|+.+++||+.
T Consensus 244 ~~~~~~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~ 288 (967)
T KOG0974|consen 244 GVNGTQLEVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLN 288 (967)
T ss_pred ecccceehhhhhhhhcceeEEEEcCCceEEEeeccCcchhhhhhh
Confidence 765544331111 22456678888888899999999999999864
No 257
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=99.19 E-value=6.7e-11 Score=62.95 Aligned_cols=37 Identities=46% Similarity=0.832 Sum_probs=34.9
Q ss_pred cceeeeCccccEEEEEECcCCCEEEEEeCCCCEEEEe
Q 026765 12 HSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWH 48 (233)
Q Consensus 12 ~~~~~~~H~~~V~~~~~~~~~~~l~s~~~D~~v~vW~ 48 (233)
..+++.+|.+.|++|+|+|++.+|+||+.|++|++||
T Consensus 3 ~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 3 CVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred EEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 3578999999999999999999999999999999997
No 258
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.18 E-value=2.3e-09 Score=81.48 Aligned_cols=204 Identities=15% Similarity=0.209 Sum_probs=139.3
Q ss_pred ceeeeCccccEEEEEECcCCCEEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCCeEE
Q 026765 13 SREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVR 92 (233)
Q Consensus 13 ~~~~~~H~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~ 92 (233)
.+.++||.+.|++...-|-.+-+.+.+.|.+||||--....+-. .-...-...+++++++.++ ...|+.|-.+|++.
T Consensus 17 l~~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~w--psI~~~mP~~~~~~~y~~e-~~~L~vg~~ngtvt 93 (404)
T KOG1409|consen 17 LSKIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYW--PSIYHYMPSPCSAMEYVSE-SRRLYVGQDNGTVT 93 (404)
T ss_pred hhhhcCchhhhhhheeccCCCCeEEccccceeeeEEeccccccC--chhhhhCCCCceEeeeecc-ceEEEEEEecceEE
Confidence 35678999999999988989999999999999999533211111 1111224568899999886 45677888889888
Q ss_pred EEECCCCe----eeee-eeecCCeeEEEECCCCCeEEEEcCCCcEEEEEcCCCeeeeeeecCceeeEEEECCCCCEEEEE
Q 026765 93 LWDARSGK----CSQQ-AELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLT 167 (233)
Q Consensus 93 iwd~~~~~----~~~~-~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (233)
-+.+...- ..+. ......+..+.|+....++++.+.|..+..--.+....+..+.+......+.+... +-..|
T Consensus 94 efs~sedfnkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~~~~hc~e~~~~lg~Y~~~~~~t~~~~d~~--~~fvG 171 (404)
T KOG1409|consen 94 EFALSEDFNKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQFAWHCTESGNRLGGYNFETPASALQFDAL--YAFVG 171 (404)
T ss_pred EEEhhhhhhhcchhhhhhhhhcceeeEEecCCceeEEEeccccceEEEeeccCCcccceEeeccCCCCceeeE--EEEec
Confidence 77654321 1111 11233455677888888999999998766544444444433332222222222222 44566
Q ss_pred eCCCeEEEEecC--CceeeeEEeeecCceeEEEECCCCCEEEEeeCCCcEEEEecC
Q 026765 168 TGNGTVEVLTYP--SLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDIS 221 (233)
Q Consensus 168 ~~~~~v~~~~~~--~~~~~~~~~~~~~~v~~i~~~p~~~~las~s~dg~v~iwd~~ 221 (233)
...|.+....+. ...++.++.+|...+.+.+|.|..+.|.+|..|..+.+||+-
T Consensus 172 d~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdig 227 (404)
T KOG1409|consen 172 DHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIG 227 (404)
T ss_pred ccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEEecc
Confidence 666777666553 345778889999999999999999999999999999999986
No 259
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.18 E-value=3.8e-11 Score=94.21 Aligned_cols=189 Identities=17% Similarity=0.193 Sum_probs=136.3
Q ss_pred cccEEEEEECcCCCEEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCCeEEEEECCCC
Q 026765 20 KKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSG 99 (233)
Q Consensus 20 ~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~iwd~~~~ 99 (233)
...|..+.|-+...++|. ...+-+.|||-. +.+ .-.++.| ..|..+.|-|.. .+|++++..|.++.-|+..|
T Consensus 170 ~Etv~Dv~~LHneq~~AV-AQK~y~yvYD~~--GtE---lHClk~~-~~v~rLeFLPyH-fLL~~~~~~G~L~Y~DVS~G 241 (545)
T KOG1272|consen 170 METVRDVTFLHNEQFFAV-AQKKYVYVYDNN--GTE---LHCLKRH-IRVARLEFLPYH-FLLVAASEAGFLKYQDVSTG 241 (545)
T ss_pred hhhhhhhhhhcchHHHHh-hhhceEEEecCC--CcE---Eeehhhc-Cchhhhcccchh-heeeecccCCceEEEeechh
Confidence 344555666544444444 456778888743 111 1112222 568889998863 67889999999999999999
Q ss_pred eeeeeeeec-CCeeEEEECCCCCeEEEEcCCCcEEEEEcCCCeeeee-eecCceeeEEEECCCCCEEEEEeCCCeEEEEe
Q 026765 100 KCSQQAELS-GENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHR-RKFGYEVNEIAWNMTGEMFFLTTGNGTVEVLT 177 (233)
Q Consensus 100 ~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 177 (233)
+.+..+... +....+.-+|-...+-+|...|.+.+|...+.+++-. ..+..++.++++.++|+++++++.|..++|||
T Consensus 242 klVa~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~skePLvKiLcH~g~V~siAv~~~G~YMaTtG~Dr~~kIWD 321 (545)
T KOG1272|consen 242 KLVASIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSKEPLVKILCHRGPVSSIAVDRGGRYMATTGLDRKVKIWD 321 (545)
T ss_pred hhhHHHHccCCccchhhcCCccceEEEcCCCceEEecCCCCcchHHHHHhcCCCcceEEECCCCcEEeecccccceeEee
Confidence 877665544 3444567788888888999999999999988777654 34567899999999999999999999999999
Q ss_pred cCCceeeeEEeeecCceeEEEECCCCCEEEEeeCCCcEEEEe
Q 026765 178 YPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWD 219 (233)
Q Consensus 178 ~~~~~~~~~~~~~~~~v~~i~~~p~~~~las~s~dg~v~iwd 219 (233)
++......++.. ..+...+++|.. -+.+.|....|.||.
T Consensus 322 lR~~~ql~t~~t-p~~a~~ls~Sqk--glLA~~~G~~v~iw~ 360 (545)
T KOG1272|consen 322 LRNFYQLHTYRT-PHPASNLSLSQK--GLLALSYGDHVQIWK 360 (545)
T ss_pred eccccccceeec-CCCccccccccc--cceeeecCCeeeeeh
Confidence 988775555443 334566777754 344556667799995
No 260
>PRK04043 tolB translocation protein TolB; Provisional
Probab=99.17 E-value=1.1e-07 Score=77.67 Aligned_cols=192 Identities=9% Similarity=0.026 Sum_probs=115.1
Q ss_pred cEEEEEECcCCCE-EEEEeCC---CCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCC--CeEEEEE
Q 026765 22 KVHSVAWNCTGTK-LASGSVD---QTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGD--KTVRLWD 95 (233)
Q Consensus 22 ~V~~~~~~~~~~~-l~s~~~D---~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d--~~i~iwd 95 (233)
.+....|+|||+. ++..+.+ ..|.++|+... ... .+...........|+|++..++++.+.+ ..|.++|
T Consensus 189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg---~~~--~lt~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d 263 (419)
T PRK04043 189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTG---KKE--KIASSQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYD 263 (419)
T ss_pred CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCC---cEE--EEecCCCcEEeeEECCCCCEEEEEEccCCCcEEEEEE
Confidence 6678999999985 6655554 33555555332 222 2222344556678999987777766555 4577778
Q ss_pred CCCCeeeeeeeecCCeeEEEECCCCCeEEEEcC-CC--cEEEEEcCCCeeeeeeecCceeeEEEECCCCCEEEEEeCC--
Q 026765 96 ARSGKCSQQAELSGENINITYKPDGTHIAVGNR-DD--ELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGN-- 170 (233)
Q Consensus 96 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-d~--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 170 (233)
+.++...+............|+|||+.|+-.+. .+ .|.++|+.+.+.......+. ....|+|+|+.++.....
T Consensus 264 l~~g~~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt~~g~--~~~~~SPDG~~Ia~~~~~~~ 341 (419)
T PRK04043 264 TNTKTLTQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVVFHGK--NNSSVSTYKNYIVYSSRETN 341 (419)
T ss_pred CCCCcEEEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCccCCC--cCceECCCCCEEEEEEcCCC
Confidence 877764433222222345689999998775543 33 46777776554322111121 124899999998877643
Q ss_pred -------CeEEEEecCCceeeeEEeeecCceeEEEECCCCCEEEEeeCC-C--cEEEEecCC
Q 026765 171 -------GTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSAD-S--LVSLWDISE 222 (233)
Q Consensus 171 -------~~v~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~las~s~d-g--~v~iwd~~~ 222 (233)
..+.+.+...++. ..+... ......+|+|||+.++-.+.+ + .+.+.+++-
T Consensus 342 ~~~~~~~~~I~v~d~~~g~~-~~LT~~-~~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~g 401 (419)
T PRK04043 342 NEFGKNTFNLYLISTNSDYI-RRLTAN-GVNQFPRFSSDGGSIMFIKYLGNQSALGIIRLNY 401 (419)
T ss_pred cccCCCCcEEEEEECCCCCe-EECCCC-CCcCCeEECCCCCEEEEEEccCCcEEEEEEecCC
Confidence 3677777766543 333322 222357899999987665543 3 356666653
No 261
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.15 E-value=2.5e-10 Score=89.55 Aligned_cols=215 Identities=15% Similarity=0.119 Sum_probs=144.9
Q ss_pred eeeeCccccEEEEEECcCCCEEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeC-CCeEE
Q 026765 14 REYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASG-DKTVR 92 (233)
Q Consensus 14 ~~~~~H~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~-d~~i~ 92 (233)
+.|. |++.|+-+.-+ -.+++.+++.||.+|-|-...- .+.-....+..|...+.+++.+-++ .++.|.+. |+.++
T Consensus 4 ksym-hrd~i~hv~~t-ka~fiiqASlDGh~KFWkKs~i-sGvEfVKhFraHL~~I~sl~~S~dg-~L~~Sv~d~Dhs~K 79 (558)
T KOG0882|consen 4 KSYM-HRDVITHVFPT-KAKFIIQASLDGHKKFWKKSRI-SGVEFVKHFRAHLGVILSLAVSYDG-WLFRSVEDPDHSVK 79 (558)
T ss_pred hhhc-ccceeeeEeee-hhheEEeeecchhhhhcCCCCc-cceeehhhhHHHHHHHHhhhccccc-eeEeeccCccccee
Confidence 4454 88888877633 4689999999999999975431 1111112356677788888877654 56778777 99999
Q ss_pred EEECCCCeeeeeeeecCCe--eEEEECCCC--CeEEEEc-CCCcEEEEEcCCCe--eeee-eecCceeeEEEECCCCCEE
Q 026765 93 LWDARSGKCSQQAELSGEN--INITYKPDG--THIAVGN-RDDELTILDVRKFK--PIHR-RKFGYEVNEIAWNMTGEMF 164 (233)
Q Consensus 93 iwd~~~~~~~~~~~~~~~~--~~~~~~~~~--~~l~~~~-~d~~i~i~d~~~~~--~~~~-~~~~~~~~~~~~~~~~~~~ 164 (233)
++|+.+-..+.-......+ .++..+|.. ..++++. .++.+.++|-+... .... ..+..++..+...+.++.+
T Consensus 80 vfDvEn~DminmiKL~~lPg~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~ 159 (558)
T KOG0882|consen 80 VFDVENFDMINMIKLVDLPGFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSA 159 (558)
T ss_pred EEEeeccchhhhcccccCCCceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCccceecccccCceEEEEeeccccce
Confidence 9998765443222222111 122223321 1344443 46889999975432 2222 2244678889999999999
Q ss_pred EEEeCCCeEEEEecCC-cee--------------eeEEeeecCceeEEEECCCCCEEEEeeCCCcEEEEecCCcEEEEee
Q 026765 165 FLTTGNGTVEVLTYPS-LRP--------------LDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTF 229 (233)
Q Consensus 165 ~~~~~~~~v~~~~~~~-~~~--------------~~~~~~~~~~v~~i~~~p~~~~las~s~dg~v~iwd~~~~~~i~~~ 229 (233)
++....|.|..|..+. .+. +..+........++.|+|++..+++-+.|.+|++++.+.+..+++|
T Consensus 160 vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqei 239 (558)
T KOG0882|consen 160 VSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEI 239 (558)
T ss_pred eeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEccccCcccccCcccEEEEEEeccchhhhhh
Confidence 9999999999998762 111 0111122344678999999999999999999999999999999988
Q ss_pred ecC
Q 026765 230 TKL 232 (233)
Q Consensus 230 ~~~ 232 (233)
++.
T Consensus 240 DE~ 242 (558)
T KOG0882|consen 240 DEV 242 (558)
T ss_pred hcc
Confidence 764
No 262
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=99.14 E-value=2.1e-10 Score=61.00 Aligned_cols=38 Identities=32% Similarity=0.625 Sum_probs=36.1
Q ss_pred eeeeEEeeecCceeEEEECCCCCEEEEeeCCCcEEEEe
Q 026765 182 RPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWD 219 (233)
Q Consensus 182 ~~~~~~~~~~~~v~~i~~~p~~~~las~s~dg~v~iwd 219 (233)
+++..+.+|...|++++|+|++++|++|+.|+.|+|||
T Consensus 2 ~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 2 KCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred eEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 56788999999999999999999999999999999997
No 263
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.11 E-value=2.9e-08 Score=75.37 Aligned_cols=201 Identities=18% Similarity=0.246 Sum_probs=124.5
Q ss_pred ccccEEEEEECcCCCE-EEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeC-C--------
Q 026765 19 HKKKVHSVAWNCTGTK-LASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASG-D-------- 88 (233)
Q Consensus 19 H~~~V~~~~~~~~~~~-l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~-d-------- 88 (233)
-.+++.++.|||||.. |.+...|-.|.||.+.+... .-++--+..+..++|+|+++ +.+-++. |
T Consensus 90 g~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~-----~~~~~pK~~~kg~~f~~dg~-f~ai~sRrDCkdyv~i~ 163 (447)
T KOG4497|consen 90 GQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKG-----YLLPHPKTNVKGYAFHPDGQ-FCAILSRRDCKDYVQIS 163 (447)
T ss_pred CCCcceeeeECCCcceEeeeecceeEEEEEEecccee-----EEecccccCceeEEECCCCc-eeeeeecccHHHHHHHH
Confidence 4678899999999955 56666799999999875321 11222234556778888754 3332222 1
Q ss_pred ---------------------------CeEEEEECCCCeeeeeeeecCCeeEEEECCCCCeEEEEcCCCcEEEEEcCCCe
Q 026765 89 ---------------------------KTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRDDELTILDVRKFK 141 (233)
Q Consensus 89 ---------------------------~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~ 141 (233)
.-+.+||---.-.+...+-.-....++|+|.++.+++|+.|+++++.+--+.+
T Consensus 164 ~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Leykv~aYe~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~tWk 243 (447)
T KOG4497|consen 164 SCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKVYAYERGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWK 243 (447)
T ss_pred hhHHHHHHHhcCCCcccccCceECCCCcEEEEecchhhheeeeeeeccceeEEEeccccceEEeeccchhhhhhceeeee
Confidence 12333332111011111112234458899999999999999998885411100
Q ss_pred ------------------------------------------------------------eeeeee-------cCceeeE
Q 026765 142 ------------------------------------------------------------PIHRRK-------FGYEVNE 154 (233)
Q Consensus 142 ------------------------------------------------------------~~~~~~-------~~~~~~~ 154 (233)
.++..+ ....+..
T Consensus 244 ~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~ 323 (447)
T KOG4497|consen 244 PFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGK 323 (447)
T ss_pred ehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCccccCccccchhhhhhhhcceeeecccCCCCCCCcccccce
Confidence 000000 0012456
Q ss_pred EEECCCCCEEEEEeCC--CeEEEEecCCceeeeEEeeecCceeEEEECCCCCEEEEeeCCCcEEEEecCCcEEE
Q 026765 155 IAWNMTGEMFFLTTGN--GTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCV 226 (233)
Q Consensus 155 ~~~~~~~~~~~~~~~~--~~v~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~las~s~dg~v~iwd~~~~~~i 226 (233)
++|++|..++++-..+ +.+-+||++..+... +.....+|....|+|....|+.+.....+++|-..--.++
T Consensus 324 lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~l~a-vLiQk~piraf~WdP~~prL~vctg~srLY~W~psg~~~V 396 (447)
T KOG4497|consen 324 LAFSCDSTYAATRNDKYPNALWLWDLQNLKLHA-VLIQKHPIRAFEWDPGRPRLVVCTGKSRLYFWAPSGPRVV 396 (447)
T ss_pred eeecCCceEEeeecCCCCceEEEEechhhhhhh-hhhhccceeEEEeCCCCceEEEEcCCceEEEEcCCCceEE
Confidence 8899999888877654 678888987654432 2235668899999999988888887778999987654444
No 264
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=99.11 E-value=1.4e-07 Score=70.40 Aligned_cols=196 Identities=16% Similarity=0.225 Sum_probs=111.1
Q ss_pred EEEEEECcCCCEEEEEeCCCCEEEEecccCCCCceee-EEEec-CcCcEEEEEEcCCC-----CCEEEEEeCCCeEEEEE
Q 026765 23 VHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKD-IELRG-HADSVDQLCWDPKH-----ADLIATASGDKTVRLWD 95 (233)
Q Consensus 23 V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~~~~~-~~~~~-h~~~v~~~~~~~~~-----~~~l~sg~~d~~i~iwd 95 (233)
=+-++||||+..||.+...|+|+++|+.....-.+.. ....+ -..+|..+.|-+.. ...|+.-..+|.++=|-
T Consensus 46 WRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~ 125 (282)
T PF15492_consen 46 WRKLAWSPDCTLLAYAESTGTIRVFDLMGSELFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYL 125 (282)
T ss_pred heEEEECCCCcEEEEEcCCCeEEEEecccceeEEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEE
Confidence 4578999999999999999999999985311000000 01111 23567777774432 22455667888888776
Q ss_pred CCC-----Ceeeeeeee----cCCeeEEEECCCCCeEEEEcCCCc-----------EEEEEcCCCeeeeeeecCceeeEE
Q 026765 96 ARS-----GKCSQQAEL----SGENINITYKPDGTHIAVGNRDDE-----------LTILDVRKFKPIHRRKFGYEVNEI 155 (233)
Q Consensus 96 ~~~-----~~~~~~~~~----~~~~~~~~~~~~~~~l~~~~~d~~-----------i~i~d~~~~~~~~~~~~~~~~~~~ 155 (233)
+.. .+....+.+ ...+.++.++|..+.|++|+.... +..|.+-+..+-.. .
T Consensus 126 vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk---------~ 196 (282)
T PF15492_consen 126 VSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYK---------Q 196 (282)
T ss_pred EEcccCCcceeeEEEEecccCCCceeEEEEcCCCCEEEEeccCCCCCccccccccCceEEEEcCCCCcEE---------E
Confidence 532 223344443 234567889999888887775321 22232222111110 0
Q ss_pred EECCCCCEEEEEeCCCeEEEEecCCceeeeEEeeecCceeEEEECCCCCEEEEeeCCCcEEEEecCCcEEEEeee
Q 026765 156 AWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFT 230 (233)
Q Consensus 156 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~las~s~dg~v~iwd~~~~~~i~~~~ 230 (233)
......+........+ ++...+.+...........|..++.||||+.||+...+|.|.+|++.+...++++.
T Consensus 197 v~~~~~~~~~~~~~~~---~~~~~~~~~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~~~~W~ 268 (282)
T PF15492_consen 197 VTSSEDDITASSKRRG---LLRIPSFKFFSRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLRLQRSWK 268 (282)
T ss_pred ccccCccccccccccc---eeeccceeeeeccccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcchhhcccc
Confidence 0000111111111111 22222222211112245679999999999999999999999999999887776654
No 265
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.06 E-value=1.7e-06 Score=66.61 Aligned_cols=204 Identities=19% Similarity=0.279 Sum_probs=134.7
Q ss_pred eeCccccEEEEEECcCCCEEEEEeC---CCCEEEEecccCCCCcee---eEEEecCcCcEEEEEEcCCCCCEEEEEeC-C
Q 026765 16 YTGHKKKVHSVAWNCTGTKLASGSV---DQTARVWHIEPHGHGKVK---DIELRGHADSVDQLCWDPKHADLIATASG-D 88 (233)
Q Consensus 16 ~~~H~~~V~~~~~~~~~~~l~s~~~---D~~v~vW~~~~~~~~~~~---~~~~~~h~~~v~~~~~~~~~~~~l~sg~~-d 88 (233)
+-.+.+..+=|+|+|+++.|.++-. +|.|..|.++... +... ...+.++ +-.-++++++++ +++++.. -
T Consensus 35 ~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~-G~Lt~ln~~~~~g~--~p~yvsvd~~g~-~vf~AnY~~ 110 (346)
T COG2706 35 LVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDD-GRLTFLNRQTLPGS--PPCYVSVDEDGR-FVFVANYHS 110 (346)
T ss_pred hccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCC-CeEEEeeccccCCC--CCeEEEECCCCC-EEEEEEccC
Confidence 3456778889999999999988754 5888888887531 2221 1122232 336678888764 5666655 5
Q ss_pred CeEEEEECCC-Cee---eeeeeecCC----------eeEEEECCCCCeEEEEcC-CCcEEEEEcCCCeeee----eeecC
Q 026765 89 KTVRLWDARS-GKC---SQQAELSGE----------NINITYKPDGTHIAVGNR-DDELTILDVRKFKPIH----RRKFG 149 (233)
Q Consensus 89 ~~i~iwd~~~-~~~---~~~~~~~~~----------~~~~~~~~~~~~l~~~~~-d~~i~i~d~~~~~~~~----~~~~~ 149 (233)
+.|.++-++. |.. ++.....+. .-...+.|+++++++... -.+|.+|++..+.... ..+.+
T Consensus 111 g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G 190 (346)
T COG2706 111 GSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKPG 190 (346)
T ss_pred ceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEcccCccccccccccCCC
Confidence 7899998865 322 122222111 234778999999887764 3679999987544322 22445
Q ss_pred ceeeEEEECCCCCEEEEEeC-CCeEEEEecCCc-eeeeEEee---------ecCceeEEEECCCCCEEEEeeC-CCcEEE
Q 026765 150 YEVNEIAWNMTGEMFFLTTG-NGTVEVLTYPSL-RPLDTVVA---------HTAGCYCIAIDPMGRYFAVGSA-DSLVSL 217 (233)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~-~~~~~~~~---------~~~~v~~i~~~p~~~~las~s~-dg~v~i 217 (233)
.....+.|+|++++..+.++ +++|.+|.+... ..+..+.. ...+.-.|.++|+|++|.++.+ ...|-+
T Consensus 191 ~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~ 270 (346)
T COG2706 191 AGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAV 270 (346)
T ss_pred CCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEE
Confidence 67889999999999888876 899999988652 22222221 1234567889999999887664 357888
Q ss_pred EecCCc
Q 026765 218 WDISEM 223 (233)
Q Consensus 218 wd~~~~ 223 (233)
|.+...
T Consensus 271 f~V~~~ 276 (346)
T COG2706 271 FSVDPD 276 (346)
T ss_pred EEEcCC
Confidence 887644
No 266
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.06 E-value=3.9e-08 Score=76.03 Aligned_cols=207 Identities=16% Similarity=0.203 Sum_probs=139.9
Q ss_pred ccccEEEEEECcCC--CEEEEEeCCCCEEEEecccCCCCcee-e-EEEecCcCcEEEEEEcCCCCCEEEEEeCCCeEEEE
Q 026765 19 HKKKVHSVAWNCTG--TKLASGSVDQTARVWHIEPHGHGKVK-D-IELRGHADSVDQLCWDPKHADLIATASGDKTVRLW 94 (233)
Q Consensus 19 H~~~V~~~~~~~~~--~~l~s~~~D~~v~vW~~~~~~~~~~~-~-~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~iw 94 (233)
-...|+.++|.-++ +.+...+.|..+.............. . ......+.+|..++.. + ..|++|-.+|.+.+|
T Consensus 54 ~~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~~--d-g~Litc~~sG~l~~~ 130 (412)
T KOG3881|consen 54 ELDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKLA--D-GTLITCVSSGNLQVR 130 (412)
T ss_pred hhhhhhhheeecCCceeEeeccccCcccccccccCCccccccccccccccccccccchhhc--C-CEEEEEecCCcEEEE
Confidence 35567788887655 34555557888777766432211100 0 0122334566666543 2 356788999999999
Q ss_pred ECCCCee----eeeeeecCCeeEEEECCCCCe-EEEEcCC--CcEEEEEcCCCeeeeeeec------C--ce--eeEEEE
Q 026765 95 DARSGKC----SQQAELSGENINITYKPDGTH-IAVGNRD--DELTILDVRKFKPIHRRKF------G--YE--VNEIAW 157 (233)
Q Consensus 95 d~~~~~~----~~~~~~~~~~~~~~~~~~~~~-l~~~~~d--~~i~i~d~~~~~~~~~~~~------~--~~--~~~~~~ 157 (233)
....+.. ...+........+.-++...+ +++|+.. ..+.+||+...+++..-+- + .+ ++.+.|
T Consensus 131 ~~k~~d~hss~l~~la~g~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~LrVPvW~tdi~F 210 (412)
T KOG3881|consen 131 HDKSGDLHSSKLIKLATGPGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWSAKNVPNDRLGLRVPVWITDIRF 210 (412)
T ss_pred eccCCccccccceeeecCCceeeeccCCCCCceEecCchhcccceeeeecccceeeeeccCCCCccccceeeeeecccee
Confidence 9874431 122223333444555565555 4558887 7899999988766644321 1 12 345566
Q ss_pred CCC--CCEEEEEeCCCeEEEEecCC-ceeeeEEeeecCceeEEEECCCCCEEEEeeCCCcEEEEecCCcEEEEe
Q 026765 158 NMT--GEMFFLTTGNGTVEVLTYPS-LRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRT 228 (233)
Q Consensus 158 ~~~--~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~~~~~v~~i~~~p~~~~las~s~dg~v~iwd~~~~~~i~~ 228 (233)
-+. ...+++++.-+.+++||.+. .+|+..+.-...++.++...|+++++.+|..-|.+..||++.+.....
T Consensus 211 l~g~~~~~fat~T~~hqvR~YDt~~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl~g~ 284 (412)
T KOG3881|consen 211 LEGSPNYKFATITRYHQVRLYDTRHQRRPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKLLGC 284 (412)
T ss_pred cCCCCCceEEEEecceeEEEecCcccCcceeEeccccCcceeeeecCCCcEEEEecccchhheecccCceeecc
Confidence 655 67789999999999999875 468888888888999999999999999999999999999999876554
No 267
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.05 E-value=8.8e-07 Score=68.18 Aligned_cols=197 Identities=13% Similarity=0.225 Sum_probs=129.6
Q ss_pred EEEEECcCCCEEEEEeC-CCCEEEEecccCCCCceeeEEEecCcCc----------EEEEEEcCCCCCEEEEEeCCCeEE
Q 026765 24 HSVAWNCTGTKLASGSV-DQTARVWHIEPHGHGKVKDIELRGHADS----------VDQLCWDPKHADLIATASGDKTVR 92 (233)
Q Consensus 24 ~~~~~~~~~~~l~s~~~-D~~v~vW~~~~~~~~~~~~~~~~~h~~~----------v~~~~~~~~~~~~l~sg~~d~~i~ 92 (233)
.-++++++|++++++.+ -+.|.|+-+...+.-. .....-.|... +....+.|++..+++.--.-..|.
T Consensus 92 ~yvsvd~~g~~vf~AnY~~g~v~v~p~~~dG~l~-~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~ 170 (346)
T COG2706 92 CYVSVDEDGRFVFVANYHSGSVSVYPLQADGSLQ-PVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIF 170 (346)
T ss_pred eEEEECCCCCEEEEEEccCceEEEEEcccCCccc-cceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEE
Confidence 67888999999999875 6889999876533211 11122234443 788899998765555555556799
Q ss_pred EEECCCCeeeee----eeecCCeeEEEECCCCCeEEEEc-CCCcEEEEEcCCC-eeeeeee------c----CceeeEEE
Q 026765 93 LWDARSGKCSQQ----AELSGENINITYKPDGTHIAVGN-RDDELTILDVRKF-KPIHRRK------F----GYEVNEIA 156 (233)
Q Consensus 93 iwd~~~~~~~~~----~~~~~~~~~~~~~~~~~~l~~~~-~d~~i~i~d~~~~-~~~~~~~------~----~~~~~~~~ 156 (233)
+|++..++.... ........-+.|+|++++..+.. -+++|.+|..... ..+..++ . ......+.
T Consensus 171 ~y~~~dg~L~~~~~~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIh 250 (346)
T COG2706 171 LYDLDDGKLTPADPAEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIH 250 (346)
T ss_pred EEEcccCccccccccccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEE
Confidence 999998765332 12223445699999999887655 4788999987552 2222211 1 12355788
Q ss_pred ECCCCCEEEEEeC-CCeEEEEecCC--ce--eeeEEeeecCceeEEEECCCCCEEEEeeCC-CcEEEEecC
Q 026765 157 WNMTGEMFFLTTG-NGTVEVLTYPS--LR--PLDTVVAHTAGCYCIAIDPMGRYFAVGSAD-SLVSLWDIS 221 (233)
Q Consensus 157 ~~~~~~~~~~~~~-~~~v~~~~~~~--~~--~~~~~~~~~~~v~~i~~~p~~~~las~s~d-g~v~iwd~~ 221 (233)
.+++|+++.++.. ...|.++.... ++ .......+........++|.+++|+++..+ ..|.+|..+
T Consensus 251 is~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d 321 (346)
T COG2706 251 ISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINPSGRFLIAANQKSDNITVFERD 321 (346)
T ss_pred ECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCCCCCEEEEEccCCCcEEEEEEc
Confidence 8999999988764 45666666543 22 111122344446789999999999988876 569999875
No 268
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.04 E-value=7.2e-09 Score=78.10 Aligned_cols=210 Identities=14% Similarity=0.242 Sum_probs=126.2
Q ss_pred ccccEEEEEECcCCCEEEEEeCCCCEEEEecccCC-CCceeeEEEecCc------------CcEEEEEEcC-CCCCEEEE
Q 026765 19 HKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHG-HGKVKDIELRGHA------------DSVDQLCWDP-KHADLIAT 84 (233)
Q Consensus 19 H~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~-~~~~~~~~~~~h~------------~~v~~~~~~~-~~~~~l~s 84 (233)
....|+++.|...|.+|++|...|.|.++.-+... .+-.-..++.+|. ..|..+.|.. .+...++-
T Consensus 25 ead~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLl 104 (460)
T COG5170 25 EADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLL 104 (460)
T ss_pred ccceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEE
Confidence 46679999999999999999999999998643211 0000011233443 3466777743 33334445
Q ss_pred EeCCCeEEEEECCCCeee--e-------------------------eeeecC-----------------CeeEEEECCCC
Q 026765 85 ASGDKTVRLWDARSGKCS--Q-------------------------QAELSG-----------------ENINITYKPDG 120 (233)
Q Consensus 85 g~~d~~i~iwd~~~~~~~--~-------------------------~~~~~~-----------------~~~~~~~~~~~ 120 (233)
.+.|++|++|.+...... . ....+. ...++.+..|.
T Consensus 105 stNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD~ 184 (460)
T COG5170 105 STNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSDK 184 (460)
T ss_pred ecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCch
Confidence 678999999988654110 0 000000 01134555555
Q ss_pred CeEEEEcCCCcEEEEEcCCCe----eeeeeecC-----ceeeEEEECCC-CCEEEEEeCCCeEEEEecCCce------ee
Q 026765 121 THIAVGNRDDELTILDVRKFK----PIHRRKFG-----YEVNEIAWNMT-GEMFFLTTGNGTVEVLTYPSLR------PL 184 (233)
Q Consensus 121 ~~l~~~~~d~~i~i~d~~~~~----~~~~~~~~-----~~~~~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~------~~ 184 (233)
..++ ...|-+|.+|++.... .+...++. ..+++..|+|. .+.+..++..|.+++.|++... .+
T Consensus 185 et~l-SaDdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcdn~~kl 263 (460)
T COG5170 185 ETLL-SADDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCDNSKKL 263 (460)
T ss_pred heee-eccceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhccCchhh
Confidence 4444 3456678999875422 11111111 23677788876 4567788889999999987321 11
Q ss_pred eE----------EeeecCceeEEEECCCCCEEEEeeCCCcEEEEecC-CcEEEEeee
Q 026765 185 DT----------VVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDIS-EMLCVRTFT 230 (233)
Q Consensus 185 ~~----------~~~~~~~v~~i~~~p~~~~las~s~dg~v~iwd~~-~~~~i~~~~ 230 (233)
.. +..-...|..+.|+++|+++++-+ --+|+|||++ ...|+++.+
T Consensus 264 fe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRd-yltvkiwDvnm~k~pikTi~ 319 (460)
T COG5170 264 FELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRD-YLTVKIWDVNMAKNPIKTIP 319 (460)
T ss_pred hhhccCcccchhHHHHhhhhcceEEcCCCcEEEEec-cceEEEEecccccCCceeec
Confidence 11 111224567789999999988544 3579999997 445777764
No 269
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.04 E-value=8e-09 Score=85.73 Aligned_cols=199 Identities=17% Similarity=0.239 Sum_probs=140.4
Q ss_pred ccccEEEEEECcCCCEEEEEeCCCCEEEEecccCCCC-----------ceeeEEEecCcCcEEEEEEcCCCCCEEEEEeC
Q 026765 19 HKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHG-----------KVKDIELRGHADSVDQLCWDPKHADLIATASG 87 (233)
Q Consensus 19 H~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~-----------~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~ 87 (233)
.+....|+.|+....++|.||.||.+||-.+.+.... -.....+.||...|.-+.|+.+.++ |-+...
T Consensus 13 nnvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QK-LTtSDt 91 (1189)
T KOG2041|consen 13 NNVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQK-LTTSDT 91 (1189)
T ss_pred CCceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEecccccc-ccccCC
Confidence 3556789999999999999999999999877543211 0112357899999999999987654 568888
Q ss_pred CCeEEEEECCCCeeeeeee---ecCCeeEEEECCCCCeEEEEcCCCcEEEEEcCCCeeeeeeecCceeeEEEECCCCCEE
Q 026765 88 DKTVRLWDARSGKCSQQAE---LSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMF 164 (233)
Q Consensus 88 d~~i~iwd~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 164 (233)
+|.|.+|=+-.+....... -.+-+.+++|..+|..++..-+||.+.+=.+...+.-.....+.....+.|++|.+.+
T Consensus 92 ~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG~kIcIvYeDGavIVGsvdGNRIwgKeLkg~~l~hv~ws~D~~~~ 171 (1189)
T KOG2041|consen 92 SGLIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDGTKICIVYEDGAVIVGSVDGNRIWGKELKGQLLAHVLWSEDLEQA 171 (1189)
T ss_pred CceEEEEeeecccHHHHHhhCcCccEEEEEEEcCCCcEEEEEEccCCEEEEeeccceecchhcchheccceeecccHHHH
Confidence 9999999987776433221 2234567999999999999999999888766544332222233456688999999999
Q ss_pred EEEeCCCeEEEEecCCc-----e--eeeEEee----ecCceeEEEE--------CCCCCEEEEeeCCCcEEEE
Q 026765 165 FLTTGNGTVEVLTYPSL-----R--PLDTVVA----HTAGCYCIAI--------DPMGRYFAVGSADSLVSLW 218 (233)
Q Consensus 165 ~~~~~~~~v~~~~~~~~-----~--~~~~~~~----~~~~v~~i~~--------~p~~~~las~s~dg~v~iw 218 (233)
+.+-.+|.++++|.... + +.....+ ....+..+.| -|+...||.+-.+|.+.|-
T Consensus 172 Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiM 244 (1189)
T KOG2041|consen 172 LFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIM 244 (1189)
T ss_pred HhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccccCCCCCCEEEEEEcCceehhh
Confidence 99999999999986421 0 1111111 1122344444 3577789999888887664
No 270
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=99.02 E-value=1.6e-09 Score=82.44 Aligned_cols=147 Identities=11% Similarity=0.131 Sum_probs=114.0
Q ss_pred EEEeCCCeEEEEECCCCeeeeeeeecCCeeEEEECCCCCeEEEEcCCCcEEEEEcCCC-----eeeeeeecCceeeEEEE
Q 026765 83 ATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRDDELTILDVRKF-----KPIHRRKFGYEVNEIAW 157 (233)
Q Consensus 83 ~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~-----~~~~~~~~~~~~~~~~~ 157 (233)
++.+.+..+-+-|+.++-. +.+...+.+.++.|...++.+..|..+|.|..+|+|.. .+.+..-++..++++..
T Consensus 228 fs~G~sqqv~L~nvetg~~-qsf~sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rlyh~Ssvtslq~ 306 (425)
T KOG2695|consen 228 FSVGLSQQVLLTNVETGHQ-QSFQSKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLYHDSSVTSLQI 306 (425)
T ss_pred ecccccceeEEEEeecccc-cccccchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEEEcCcchhhhhh
Confidence 5677788888889887643 34445667788889988899999999999999999854 34555666777777754
Q ss_pred C-CCCCEEEEEeCCCeEEEEecCCcee---eeEEeeecCceeE--EEECCCCCEEEEeeCCCcEEEEecCCcEEEEeee
Q 026765 158 N-MTGEMFFLTTGNGTVEVLTYPSLRP---LDTVVAHTAGCYC--IAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFT 230 (233)
Q Consensus 158 ~-~~~~~~~~~~~~~~v~~~~~~~~~~---~~~~~~~~~~v~~--i~~~p~~~~las~s~dg~v~iwd~~~~~~i~~~~ 230 (233)
= .+++++++.+.+|+|++||.+--+. +.++.+|...-.- +-..+....+++++.|...|||.++++..+.+++
T Consensus 307 Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~tip 385 (425)
T KOG2695|consen 307 LQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLCTIP 385 (425)
T ss_pred hccccceEeeccCcCceeEeeehhhhcccceeeeecccccccccccccccccceEEEccCeeEEEEEecccCceeeccC
Confidence 3 3788999999999999999976555 7778888653322 3345667789999999999999999998887753
No 271
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.00 E-value=1.1e-09 Score=88.25 Aligned_cols=170 Identities=16% Similarity=0.213 Sum_probs=116.3
Q ss_pred eEEEecCcCcEEEEEEcCCCCCEEEEEeCCCeEEEEECCCC-------eeeeeeee-cCCeeEEEECCCCCeEEEEcCCC
Q 026765 59 DIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSG-------KCSQQAEL-SGENINITYKPDGTHIAVGNRDD 130 (233)
Q Consensus 59 ~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~iwd~~~~-------~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~d~ 130 (233)
...+.||...|+.++--. +.+-+++++.|++|++|.++.. .|..+... ..++-.+.|..+-++++++ |+
T Consensus 728 L~nf~GH~~~iRai~Aid-NENSFiSASkDKTVKLWSik~EgD~~~tsaCQfTY~aHkk~i~~igfL~~lr~i~Sc--D~ 804 (1034)
T KOG4190|consen 728 LCNFTGHQEKIRAIAAID-NENSFISASKDKTVKLWSIKPEGDEIGTSACQFTYQAHKKPIHDIGFLADLRSIASC--DG 804 (1034)
T ss_pred eecccCcHHHhHHHHhcc-cccceeeccCCceEEEEEeccccCccccceeeeEhhhccCcccceeeeeccceeeec--cC
Confidence 345678998888775443 3456789999999999998642 13333322 2344567787777777654 78
Q ss_pred cEEEEEcCCCeeeeeeec----C--ceeeEEEECCCCCEEEEE-eCCCeEEEEecCCceeeeEEeee-----cCceeEEE
Q 026765 131 ELTILDVRKFKPIHRRKF----G--YEVNEIAWNMTGEMFFLT-TGNGTVEVLTYPSLRPLDTVVAH-----TAGCYCIA 198 (233)
Q Consensus 131 ~i~i~d~~~~~~~~~~~~----~--~~~~~~~~~~~~~~~~~~-~~~~~v~~~~~~~~~~~~~~~~~-----~~~v~~i~ 198 (233)
.+++||.--++++.+... + ..+.++ -+-+...++++ +...+++++|.+..+....+... ..-+.+++
T Consensus 805 giHlWDPFigr~Laq~~dapk~~a~~~ikcl-~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~kVcna~~Pna~~R~ia 883 (1034)
T KOG4190|consen 805 GIHLWDPFIGRLLAQMEDAPKEGAGGNIKCL-ENVDRHILIAGCSAESTVKLFDARSCEWTCELKVCNAPGPNALTRAIA 883 (1034)
T ss_pred cceeecccccchhHhhhcCcccCCCceeEec-ccCcchheeeeccchhhheeeecccccceeeEEeccCCCCchheeEEE
Confidence 899999765554432221 1 112222 12234455555 56889999999877665555432 34578999
Q ss_pred ECCCCCEEEEeeCCCcEEEEecCCcEEEEeeecC
Q 026765 199 IDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKL 232 (233)
Q Consensus 199 ~~p~~~~las~s~dg~v~iwd~~~~~~i~~~~~~ 232 (233)
.-|.|+++|.|-.+|+|.+.|.+.|+.|.....+
T Consensus 884 Va~~GN~lAa~LSnGci~~LDaR~G~vINswrpm 917 (1034)
T KOG4190|consen 884 VADKGNKLAAALSNGCIAILDARNGKVINSWRPM 917 (1034)
T ss_pred eccCcchhhHHhcCCcEEEEecCCCceeccCCcc
Confidence 9999999999999999999999999988876554
No 272
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.98 E-value=3.1e-07 Score=68.04 Aligned_cols=200 Identities=11% Similarity=0.055 Sum_probs=127.1
Q ss_pred EEEECcC-----CCEEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCCeEEEEECCCC
Q 026765 25 SVAWNCT-----GTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSG 99 (233)
Q Consensus 25 ~~~~~~~-----~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~iwd~~~~ 99 (233)
.+.|.|- ..+||.||+-|...+|...+.. .... ....|...|.-+.=.-+...-+.-++.|.++++.++..+
T Consensus 72 g~~F~p~s~~~kc~~la~gG~~g~fd~~~~~tn~-~h~~--~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~ 148 (344)
T KOG4532|consen 72 GMTFTPGSFINKCVTLADGGASGQFDLFACNTND-GHLY--QCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGD 148 (344)
T ss_pred cccccchHhhccccEEEeccccceeeeecccCcc-ccee--eecccccchhhhhhhcccccceeeccCCcceeEEEEecC
Confidence 4566663 3578999999999999876422 1111 122233322211100011122445788999999988654
Q ss_pred eeeeeeeec-CCeeEEEECCCCCeEEEEcCCCcEEEEEcCCCe-eeee-e--ecCceeeEEEECCCCCEEEEEeCCCeEE
Q 026765 100 KCSQQAELS-GENINITYKPDGTHIAVGNRDDELTILDVRKFK-PIHR-R--KFGYEVNEIAWNMTGEMFFLTTGNGTVE 174 (233)
Q Consensus 100 ~~~~~~~~~-~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~-~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 174 (233)
......... -....+.++++++++++.+....+..|.+.... -+.. . .....-.+..|+.....++++..||.+.
T Consensus 149 s~~~~~h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~ 228 (344)
T KOG4532|consen 149 SNKFAVHNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEYIENIYEAPTSDHGFYNSFSENDLQFAVVFQDGTCA 228 (344)
T ss_pred cccceeeccccceeeeEEcCCCceEEEecCCCcceEEEeCCccceeeeeEecccCCCceeeeeccCcceEEEEecCCcEE
Confidence 322222111 124568899999999999999999999875422 2211 1 1223345778999999999999999999
Q ss_pred EEecCCce-eeeEE----eeecCceeEEEECCCCC--EEEEeeCCCcEEEEecCCcEEEE
Q 026765 175 VLTYPSLR-PLDTV----VAHTAGCYCIAIDPMGR--YFAVGSADSLVSLWDISEMLCVR 227 (233)
Q Consensus 175 ~~~~~~~~-~~~~~----~~~~~~v~~i~~~p~~~--~las~s~dg~v~iwd~~~~~~i~ 227 (233)
|||.+... ++... ..|.+.+..+.|+|.|. +|...-.=+.+.+-|++.+...+
T Consensus 229 I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q 288 (344)
T KOG4532|consen 229 IYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQ 288 (344)
T ss_pred EEEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceee
Confidence 99987532 22222 23778899999998774 34444455789999998775443
No 273
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=98.97 E-value=1.1e-08 Score=84.91 Aligned_cols=196 Identities=16% Similarity=0.239 Sum_probs=132.5
Q ss_pred ccceeeeCccccEEEEEECcCCCEEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCCe
Q 026765 11 LHSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKT 90 (233)
Q Consensus 11 ~~~~~~~~H~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~ 90 (233)
...+++.||++.|..+.|+.....|-|...+|.|.||-+-.+ ++...+.-...+..|.+++|+.+|+++ +..-.||.
T Consensus 62 smNQtLeGH~~sV~vvTWNe~~QKLTtSDt~GlIiVWmlykg--sW~EEMiNnRnKSvV~SmsWn~dG~kI-cIvYeDGa 138 (1189)
T KOG2041|consen 62 SMNQTLEGHNASVMVVTWNENNQKLTTSDTSGLIIVWMLYKG--SWCEEMINNRNKSVVVSMSWNLDGTKI-CIVYEDGA 138 (1189)
T ss_pred chhhhhccCcceEEEEEeccccccccccCCCceEEEEeeecc--cHHHHHhhCcCccEEEEEEEcCCCcEE-EEEEccCC
Confidence 345789999999999999999999999999999999987532 232222223355678999999987654 45678888
Q ss_pred EEEEECCCCeeeeeeeecCC-eeEEEECCCCCeEEEEcCCCcEEEEEcCCCee--------ee----eeecCceeeEEEE
Q 026765 91 VRLWDARSGKCSQQAELSGE-NINITYKPDGTHIAVGNRDDELTILDVRKFKP--------IH----RRKFGYEVNEIAW 157 (233)
Q Consensus 91 i~iwd~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~--------~~----~~~~~~~~~~~~~ 157 (233)
|.+=.+...+. .--.+.+. ..-+.|++|.+.++.+-..|.+.++|....-. +. ....+..+..+.|
T Consensus 139 vIVGsvdGNRI-wgKeLkg~~l~hv~ws~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w 217 (1189)
T KOG2041|consen 139 VIVGSVDGNRI-WGKELKGQLLAHVLWSEDLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEW 217 (1189)
T ss_pred EEEEeecccee-cchhcchheccceeecccHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceee
Confidence 87665544321 11111111 22478999998888888899999999643110 00 0011223445555
Q ss_pred --------CCCCCEEEEEeCCCeEEEEecC-CceeeeEEeeecCceeEEEECCCCCEEEEeeCC
Q 026765 158 --------NMTGEMFFLTTGNGTVEVLTYP-SLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSAD 212 (233)
Q Consensus 158 --------~~~~~~~~~~~~~~~v~~~~~~-~~~~~~~~~~~~~~v~~i~~~p~~~~las~s~d 212 (233)
.|+-..+++.-.+|.+.+.... +.+|... ..+-.+..+.|+++|..||.++.|
T Consensus 218 ~~g~~~~v~pdrP~lavcy~nGr~QiMR~eND~~Pvv~--dtgm~~vgakWnh~G~vLAvcG~~ 279 (1189)
T KOG2041|consen 218 NTGPYQPVPPDRPRLAVCYANGRMQIMRSENDPEPVVV--DTGMKIVGAKWNHNGAVLAVCGND 279 (1189)
T ss_pred ccCccccCCCCCCEEEEEEcCceehhhhhcCCCCCeEE--ecccEeecceecCCCcEEEEccCc
Confidence 3567788899999999887653 3334322 223467789999999999999865
No 274
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=98.96 E-value=1.8e-06 Score=78.16 Aligned_cols=198 Identities=8% Similarity=0.021 Sum_probs=125.5
Q ss_pred EEEEECcC-CCEEEEEeCCCCEEEEecccCCCCceeeEEEec--------------CcCcEEEEEEcCCCCCEEEEEeCC
Q 026765 24 HSVAWNCT-GTKLASGSVDQTARVWHIEPHGHGKVKDIELRG--------------HADSVDQLCWDPKHADLIATASGD 88 (233)
Q Consensus 24 ~~~~~~~~-~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~--------------h~~~v~~~~~~~~~~~~l~sg~~d 88 (233)
..+++++. +...++-..++.|++||... ... ..+.+ +-..-..+++++++..++++-..+
T Consensus 571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~G----~~i-~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n 645 (1057)
T PLN02919 571 GKLAIDLLNNRLFISDSNHNRIVVTDLDG----NFI-VQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTEN 645 (1057)
T ss_pred ceEEEECCCCeEEEEECCCCeEEEEeCCC----CEE-EEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCC
Confidence 35788775 55667777788999998742 111 11111 112346788888755455555566
Q ss_pred CeEEEEECCCCeeeeeeee-----------------cCCeeEEEECC-CCCeEEEEcCCCcEEEEEcCCCeeeeeee---
Q 026765 89 KTVRLWDARSGKCSQQAEL-----------------SGENINITYKP-DGTHIAVGNRDDELTILDVRKFKPIHRRK--- 147 (233)
Q Consensus 89 ~~i~iwd~~~~~~~~~~~~-----------------~~~~~~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~~~~~~--- 147 (233)
+.|+++|..++........ -..+..++++| ++..+++...++.|.+||...........
T Consensus 646 ~~Ir~id~~~~~V~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~~~G~G~ 725 (1057)
T PLN02919 646 HALREIDFVNETVRTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRVFSGDGY 725 (1057)
T ss_pred ceEEEEecCCCEEEEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEEEEecCCc
Confidence 7899999877643211100 01235689999 45566677778899999986543211000
Q ss_pred ------------cCceeeEEEECCCCCE-EEEEeCCCeEEEEecCCceeeeEE-------------ee--------ecCc
Q 026765 148 ------------FGYEVNEIAWNMTGEM-FFLTTGNGTVEVLTYPSLRPLDTV-------------VA--------HTAG 193 (233)
Q Consensus 148 ------------~~~~~~~~~~~~~~~~-~~~~~~~~~v~~~~~~~~~~~~~~-------------~~--------~~~~ 193 (233)
.......++++++++. +++...++.|++||..++...... -. .-..
T Consensus 726 ~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~ 805 (1057)
T PLN02919 726 ERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQH 805 (1057)
T ss_pred cccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccC
Confidence 0123457899999985 455567899999998765421100 00 0112
Q ss_pred eeEEEECCCCCEEEEeeCCCcEEEEecCCcEEE
Q 026765 194 CYCIAIDPMGRYFAVGSADSLVSLWDISEMLCV 226 (233)
Q Consensus 194 v~~i~~~p~~~~las~s~dg~v~iwd~~~~~~i 226 (233)
...++++++|+.+++-+.++.|++||...+...
T Consensus 806 P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~ 838 (1057)
T PLN02919 806 PLGVLCAKDGQIYVADSYNHKIKKLDPATKRVT 838 (1057)
T ss_pred CceeeEeCCCcEEEEECCCCEEEEEECCCCeEE
Confidence 458899999999999999999999999877654
No 275
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=98.92 E-value=1.3e-06 Score=69.80 Aligned_cols=192 Identities=13% Similarity=0.076 Sum_probs=124.5
Q ss_pred CcCCCEEEEEeCCCCEEEEecccCCCCceeeEEEe-----c-----CcCcEEEEE-EcCCCCCEEEEEeCCCeEEEEECC
Q 026765 29 NCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELR-----G-----HADSVDQLC-WDPKHADLIATASGDKTVRLWDAR 97 (233)
Q Consensus 29 ~~~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~-----~-----h~~~v~~~~-~~~~~~~~l~sg~~d~~i~iwd~~ 97 (233)
+.||+.++- +.-|.|.++|.++.... .+++. . ...+.--+. |++.++.+++..|. |+..|.+.-
T Consensus 275 nsDGkrIvF-q~~GdIylydP~td~le---kldI~lpl~rk~k~~k~~~pskyledfa~~~Gd~ia~VSR-GkaFi~~~~ 349 (668)
T COG4946 275 NSDGKRIVF-QNAGDIYLYDPETDSLE---KLDIGLPLDRKKKQPKFVNPSKYLEDFAVVNGDYIALVSR-GKAFIMRPW 349 (668)
T ss_pred CCCCcEEEE-ecCCcEEEeCCCcCcce---eeecCCccccccccccccCHHHhhhhhccCCCcEEEEEec-CcEEEECCC
Confidence 346666544 23477888887654322 22221 0 011111222 55566677766554 556665544
Q ss_pred CCeeeeeeeecCCeeEEEECCCCCeEEEEcCCC-cEEEEEcCCCeeeeeeecCceeeEEEECCCCCEEEEEeCCCeEEEE
Q 026765 98 SGKCSQQAELSGENINITYKPDGTHIAVGNRDD-ELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNGTVEVL 176 (233)
Q Consensus 98 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~-~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 176 (233)
.+-.++ ....+.+.-..+..+++-++.|..|| .+-++|.++.+.-...+--..+..+..+++|+.++++.....+.++
T Consensus 350 ~~~~iq-v~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~kr~e~~lg~I~av~vs~dGK~~vvaNdr~el~vi 428 (668)
T COG4946 350 DGYSIQ-VGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEVKRIEKDLGNIEAVKVSPDGKKVVVANDRFELWVI 428 (668)
T ss_pred CCeeEE-cCCCCceEEEEEccCCcceEEeccCCceEEEEecCCceEEEeeCCccceEEEEEcCCCcEEEEEcCceEEEEE
Confidence 433222 12223333345555666788899988 8999999876643333333468899999999999999999999999
Q ss_pred ecCCceeeeEEeeecCceeEEEECCCCCEEEEeeCCC----cEEEEecCCcEEE
Q 026765 177 TYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADS----LVSLWDISEMLCV 226 (233)
Q Consensus 177 ~~~~~~~~~~~~~~~~~v~~i~~~p~~~~las~s~dg----~v~iwd~~~~~~i 226 (233)
|.+++....--....+-|+.+.|+|+++++|-+-.+| .|+++|+..++..
T Consensus 429 didngnv~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy 482 (668)
T COG4946 429 DIDNGNVRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIY 482 (668)
T ss_pred EecCCCeeEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEE
Confidence 9988765433334456789999999999999888776 5899999987653
No 276
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.92 E-value=5.3e-08 Score=75.53 Aligned_cols=161 Identities=16% Similarity=0.191 Sum_probs=101.0
Q ss_pred EEEEEECcCCCEEEEEeCCCCEEEEecccCCCCceeeE---EEecCcCcEEEEEEcCCCCCEEEEEeCCCeEEEEECCCC
Q 026765 23 VHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDI---ELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSG 99 (233)
Q Consensus 23 V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~---~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~iwd~~~~ 99 (233)
...+.+++++.++|.+-.++...++++..... ..... ..+.....++.+..... ..+.-.++....+.+|....+
T Consensus 65 ~~~~~~s~~~~llAv~~~~K~~~~f~~~~~~~-~~kl~~~~~v~~~~~ai~~~~~~~s-v~v~dkagD~~~~di~s~~~~ 142 (390)
T KOG3914|consen 65 PALVLTSDSGRLVAVATSSKQRAVFDYRENPK-GAKLLDVSCVPKRPTAISFIREDTS-VLVADKAGDVYSFDILSADSG 142 (390)
T ss_pred ccccccCCCceEEEEEeCCCceEEEEEecCCC-cceeeeEeecccCcceeeeeeccce-EEEEeecCCceeeeeeccccc
Confidence 34455677888888888878776776643221 11111 11222233444443321 122234455666777777665
Q ss_pred eeeeeeeecCCeeEEEECCCCCeEEEEcCCCcEEEEEcCCCeeeeeeecCc--eeeEEEECCCCCEEEEEeCCCeEEEEe
Q 026765 100 KCSQQAELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGY--EVNEIAWNMTGEMFFLTTGNGTVEVLT 177 (233)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~v~~~~ 177 (233)
.+...+-+-.....++++||+++|+++..|..|++-.......+.....++ -|..++.. ++..++++++|+++++||
T Consensus 143 ~~~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~-~~~~LlS~sGD~tlr~Wd 221 (390)
T KOG3914|consen 143 RCEPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLT-DNYLLLSGSGDKTLRLWD 221 (390)
T ss_pred CcchhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeec-cCceeeecCCCCcEEEEe
Confidence 544433333455679999999999999999999997766555555544433 35566664 345589999999999999
Q ss_pred cCCceeeeE
Q 026765 178 YPSLRPLDT 186 (233)
Q Consensus 178 ~~~~~~~~~ 186 (233)
+.+++.+.+
T Consensus 222 ~~sgk~L~t 230 (390)
T KOG3914|consen 222 ITSGKLLDT 230 (390)
T ss_pred cccCCcccc
Confidence 988775543
No 277
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=98.91 E-value=1.4e-07 Score=72.01 Aligned_cols=201 Identities=11% Similarity=0.173 Sum_probs=137.8
Q ss_pred cccEEEEEECcCCCEEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCCeEEEEECCCC
Q 026765 20 KKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSG 99 (233)
Q Consensus 20 ~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~iwd~~~~ 99 (233)
..+++++.+.++...|+.|=..|+|.-+.+...-...........|...|..+-|+.. ...+++.+.|+.+.---.+.+
T Consensus 68 P~~~~~~~y~~e~~~L~vg~~ngtvtefs~sedfnkm~~~r~~~~h~~~v~~~if~~~-~e~V~s~~~dk~~~~hc~e~~ 146 (404)
T KOG1409|consen 68 PSPCSAMEYVSESRRLYVGQDNGTVTEFALSEDFNKMTFLKDYLAHQARVSAIVFSLT-HEWVLSTGKDKQFAWHCTESG 146 (404)
T ss_pred CCCceEeeeeccceEEEEEEecceEEEEEhhhhhhhcchhhhhhhhhcceeeEEecCC-ceeEEEeccccceEEEeeccC
Confidence 6678999999999999999899998887664211111111234579999999999865 567889999987765444444
Q ss_pred eeeeeeeecCCeeEEEECCCCCeEEEEcCCCcEEEEEcCC--Ceeeeee-ecCceeeEEEECCCCCEEEEEeCCCeEEEE
Q 026765 100 KCSQQAELSGENINITYKPDGTHIAVGNRDDELTILDVRK--FKPIHRR-KFGYEVNEIAWNMTGEMFFLTTGNGTVEVL 176 (233)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~--~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~ 176 (233)
.......+.....++.+.-. +..+|...+.+.+..+.. ..++... .+...+.++.|.+....+.++..|..+.+|
T Consensus 147 ~~lg~Y~~~~~~t~~~~d~~--~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~w 224 (404)
T KOG1409|consen 147 NRLGGYNFETPASALQFDAL--YAFVGDHSGQITMLKLEQNGCQLITTFNGHTGEVTCLKWDPGQRLLFSGASDHSVIMW 224 (404)
T ss_pred CcccceEeeccCCCCceeeE--EEEecccccceEEEEEeecCCceEEEEcCcccceEEEEEcCCCcEEEeccccCceEEE
Confidence 33222222211122222111 445566667776665433 2333332 244678999999999999999999999999
Q ss_pred ecCCce-eeeEEeeecCceeEEEECCCCCEEEEeeCCCcEEEEecCCc
Q 026765 177 TYPSLR-PLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEM 223 (233)
Q Consensus 177 ~~~~~~-~~~~~~~~~~~v~~i~~~p~~~~las~s~dg~v~iwd~~~~ 223 (233)
|+.-.+ ....+.+|...|..+..-+.-+.|.+++.||.|.+||++-.
T Consensus 225 digg~~g~~~el~gh~~kV~~l~~~~~t~~l~S~~edg~i~~w~mn~~ 272 (404)
T KOG1409|consen 225 DIGGRKGTAYELQGHNDKVQALSYAQHTRQLISCGEDGGIVVWNMNVK 272 (404)
T ss_pred eccCCcceeeeeccchhhhhhhhhhhhheeeeeccCCCeEEEEeccce
Confidence 986433 33456688889998888888889999999999999999844
No 278
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=98.90 E-value=1.4e-06 Score=65.45 Aligned_cols=181 Identities=15% Similarity=0.238 Sum_probs=112.5
Q ss_pred CCEEEEecccCCCCceeeEEEecCcCcEEEEEEcC--CCCC-EEEEEeCCCeEEEEECCCCeeeeeee-ecC------Ce
Q 026765 42 QTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDP--KHAD-LIATASGDKTVRLWDARSGKCSQQAE-LSG------EN 111 (233)
Q Consensus 42 ~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~--~~~~-~l~sg~~d~~i~iwd~~~~~~~~~~~-~~~------~~ 111 (233)
|.+.++++..-.....-.++-. -...+..+.|.. .++. .++-+-.+|.|.++..........+. ++. ..
T Consensus 46 Gkl~Lys~~d~~~~~l~~~q~~-dts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ls~~ki~~~~~ 124 (339)
T KOG0280|consen 46 GKLHLYSLEDMKLSPLDTLQCT-DTSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRGLSSKKISVVEA 124 (339)
T ss_pred cceEEEeecccccCccceeeee-cccccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecccchhhhhheee
Confidence 4567777653221111111111 224455666632 2233 45567778899998765443322222 111 23
Q ss_pred eEEEECCCCCeEEEEcCCCcEEEEEcCCCeeee--e-eecCceeeEEEECCC-CCEEEEEeCCCeEEEEecCC-ceeeeE
Q 026765 112 INITYKPDGTHIAVGNRDDELTILDVRKFKPIH--R-RKFGYEVNEIAWNMT-GEMFFLTTGNGTVEVLTYPS-LRPLDT 186 (233)
Q Consensus 112 ~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~--~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~v~~~~~~~-~~~~~~ 186 (233)
.++.|++.+..++++..+|.+.+.+........ . ..+..+.....|+.. .+.+.+|+.|+.+..||.+. .+.+..
T Consensus 125 lslD~~~~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~ 204 (339)
T KOG0280|consen 125 LSLDISTSGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWH 204 (339)
T ss_pred eEEEeeccCceEEEEcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCcceeee
Confidence 457788999999999999998855433222211 2 123456666666543 36778899999999999983 333322
Q ss_pred -EeeecCceeEEEECC-CCCEEEEeeCCCcEEEEecCCc
Q 026765 187 -VVAHTAGCYCIAIDP-MGRYFAVGSADSLVSLWDISEM 223 (233)
Q Consensus 187 -~~~~~~~v~~i~~~p-~~~~las~s~dg~v~iwd~~~~ 223 (233)
...|..+|.+|.-+| ...++++|+.|-.|++||.+.+
T Consensus 205 n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm 243 (339)
T KOG0280|consen 205 NSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNM 243 (339)
T ss_pred cceeeecceEEEecCCCCCceEEEeccccceeeeehhcc
Confidence 456899999999886 5679999999999999999843
No 279
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=98.88 E-value=3.9e-06 Score=67.09 Aligned_cols=119 Identities=14% Similarity=0.191 Sum_probs=89.0
Q ss_pred eCccccEEEEEECcCCCEEEEEeCCC-CEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCCeEEEEE
Q 026765 17 TGHKKKVHSVAWNCTGTKLASGSVDQ-TARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWD 95 (233)
Q Consensus 17 ~~H~~~V~~~~~~~~~~~l~s~~~D~-~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~iwd 95 (233)
-+|.+.|.-..+.-+++-++.|-.|| .+-|++.... ..+ .+.+.-+.|.++..+|++ +.++.+.....+.+.|
T Consensus 356 v~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~---e~k--r~e~~lg~I~av~vs~dG-K~~vvaNdr~el~vid 429 (668)
T COG4946 356 VGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGG---EVK--RIEKDLGNIEAVKVSPDG-KKVVVANDRFELWVID 429 (668)
T ss_pred cCCCCceEEEEEccCCcceEEeccCCceEEEEecCCc---eEE--EeeCCccceEEEEEcCCC-cEEEEEcCceEEEEEE
Confidence 36888898888888888899999999 8999987642 222 344556789999999985 5667788888899999
Q ss_pred CCCCeeeeeee-ecCCeeEEEECCCCCeEEEEcCCC----cEEEEEcCCCe
Q 026765 96 ARSGKCSQQAE-LSGENINITYKPDGTHIAVGNRDD----ELTILDVRKFK 141 (233)
Q Consensus 96 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~d~----~i~i~d~~~~~ 141 (233)
+.++.....-. -.+.+....|+|+++++|-+--+| .|+++|+...+
T Consensus 430 idngnv~~idkS~~~lItdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~K 480 (668)
T COG4946 430 IDNGNVRLIDKSEYGLITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGK 480 (668)
T ss_pred ecCCCeeEecccccceeEEEEEcCCceeEEEecCcceeeeeEEEEecCCCe
Confidence 99987533221 224566789999999999877665 58889886544
No 280
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.87 E-value=3.7e-06 Score=68.83 Aligned_cols=155 Identities=12% Similarity=0.056 Sum_probs=97.3
Q ss_pred cEEEEEEcCCCCCEEEEEeC---CCeEEEEECCCCeeeeeeeecCCeeEEEECCCCCeEEEEc-CC--CcEEEEEcCCCe
Q 026765 68 SVDQLCWDPKHADLIATASG---DKTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGN-RD--DELTILDVRKFK 141 (233)
Q Consensus 68 ~v~~~~~~~~~~~~l~sg~~---d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~d--~~i~i~d~~~~~ 141 (233)
......|+|++..+++..+. +..|.++|+.+++........+......|+|||+.++... .+ ..|.++|+.+.+
T Consensus 189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g~ 268 (419)
T PRK04043 189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIASSQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTKT 268 (419)
T ss_pred CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEecCCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCCc
Confidence 67788999998764443223 3568889998887655444455555678999998876433 23 457777876654
Q ss_pred eeeeeecCceeeEEEECCCCCEEEEEeC-CC--eEEEEecCCceeeeEEeeecCceeEEEECCCCCEEEEeeCC------
Q 026765 142 PIHRRKFGYEVNEIAWNMTGEMFFLTTG-NG--TVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSAD------ 212 (233)
Q Consensus 142 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~v~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~las~s~d------ 212 (233)
.............-.|+|||+.++..+. .+ .+.+++...++... +..... ....|+|+|++|+-.+..
T Consensus 269 ~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~r-lt~~g~--~~~~~SPDG~~Ia~~~~~~~~~~~ 345 (419)
T PRK04043 269 LTQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQ-VVFHGK--NNSSVSTYKNYIVYSSRETNNEFG 345 (419)
T ss_pred EEEcccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEe-CccCCC--cCceECCCCCEEEEEEcCCCcccC
Confidence 3322222212334579999998877653 33 56666776554422 221111 124899999998766643
Q ss_pred ---CcEEEEecCCcEE
Q 026765 213 ---SLVSLWDISEMLC 225 (233)
Q Consensus 213 ---g~v~iwd~~~~~~ 225 (233)
..|.+.|+..+..
T Consensus 346 ~~~~~I~v~d~~~g~~ 361 (419)
T PRK04043 346 KNTFNLYLISTNSDYI 361 (419)
T ss_pred CCCcEEEEEECCCCCe
Confidence 2678888877653
No 281
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.86 E-value=2.8e-08 Score=82.79 Aligned_cols=204 Identities=19% Similarity=0.275 Sum_probs=130.9
Q ss_pred eeeCccccEEEEEECcCC-CEEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCCeEEE
Q 026765 15 EYTGHKKKVHSVAWNCTG-TKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRL 93 (233)
Q Consensus 15 ~~~~H~~~V~~~~~~~~~-~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~i 93 (233)
.+-||..+|+.+.|+|+. ..+++++.|-.|..||+..... ....+..-......++|+-.+++.+++ +..+.|++
T Consensus 109 ~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~---p~ys~~~w~s~asqVkwnyk~p~vlas-shg~~i~v 184 (1081)
T KOG0309|consen 109 VLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHR---PFYSTSSWRSAASQVKWNYKDPNVLAS-SHGNDIFV 184 (1081)
T ss_pred EEecCccceeccccCCCCCcceeeccccccceeeeccCCCc---ceeeeecccccCceeeecccCcchhhh-ccCCceEE
Confidence 457999999999999987 5789999999999999864221 122222333456778998888887754 55667999
Q ss_pred EECCCCeeee-eeeec-CCeeEEEECC-CCCeEEEEcCCCcEEEEEcCCCee--eeeeecCceeeEEEECCCCCEEEEE-
Q 026765 94 WDARSGKCSQ-QAELS-GENINITYKP-DGTHIAVGNRDDELTILDVRKFKP--IHRRKFGYEVNEIAWNMTGEMFFLT- 167 (233)
Q Consensus 94 wd~~~~~~~~-~~~~~-~~~~~~~~~~-~~~~l~~~~~d~~i~i~d~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~- 167 (233)
||++.+.... ....+ ..+..+.|.. .-..+.+++.|++++.||-.+... -+......++..-.+-|-|+-.++.
T Consensus 185 wd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt~~piw~~r~~Pfg~g~~~mp 264 (1081)
T KOG0309|consen 185 WDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTVTTNFPIWRGRYLPFGEGYCIMP 264 (1081)
T ss_pred EeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccccccccceeccccCcceeccccccCceeEecc
Confidence 9999875332 22111 1112233322 223567889999999999764322 2233334555555555555443332
Q ss_pred -eCCCeEEEEecC----------CceeeeEEeeecCceeEEEEC--------CCCC--EEEEeeCCCcEEEEecCC
Q 026765 168 -TGNGTVEVLTYP----------SLRPLDTVVAHTAGCYCIAID--------PMGR--YFAVGSADSLVSLWDISE 222 (233)
Q Consensus 168 -~~~~~v~~~~~~----------~~~~~~~~~~~~~~v~~i~~~--------p~~~--~las~s~dg~v~iwd~~~ 222 (233)
.++..+.+++.+ ..+++..|.||...|...-|- .+.+ .|+|-|.|..+++|-+.+
T Consensus 265 ~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlWpI~~ 340 (1081)
T KOG0309|consen 265 MVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHDDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLRLWPIDS 340 (1081)
T ss_pred ccCCeeeeeccccchhhhhccccCCcceeeecCcchHHHHHhhhhcccccCCCCccceeEEEeecCCceEeeeccH
Confidence 233344444322 246788999999887655442 2222 699999999999998864
No 282
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.86 E-value=1e-08 Score=78.15 Aligned_cols=132 Identities=17% Similarity=0.124 Sum_probs=100.0
Q ss_pred ccccEEEEEECcCCCEEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCCeEEEEECCC
Q 026765 19 HKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARS 98 (233)
Q Consensus 19 H~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~iwd~~~ 98 (233)
-+..|.+++|...++++..|+..|.|.+.|+....++......---|...|+++..-...+..|++.+-+|.|++||++.
T Consensus 251 sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~rlyh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~ 330 (425)
T KOG2695|consen 251 SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQRLYHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRA 330 (425)
T ss_pred cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceEEEEcCcchhhhhhhccccceEeeccCcCceeEeeehh
Confidence 36678899998889999999999999999998776655544444468899999887653445667778999999999998
Q ss_pred Cee---eeeeeecCC---eeEEEECCCCCeEEEEcCCCcEEEEEcCCCeeeeeeecCc
Q 026765 99 GKC---SQQAELSGE---NINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGY 150 (233)
Q Consensus 99 ~~~---~~~~~~~~~---~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~ 150 (233)
.++ +++.+.+.. ...+-..+....+++++.|-..+||.++.+......+...
T Consensus 331 ~K~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~tipf~~ 388 (425)
T KOG2695|consen 331 TKCKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLCTIPFPY 388 (425)
T ss_pred hhcccceeeeecccccccccccccccccceEEEccCeeEEEEEecccCceeeccCCCC
Confidence 777 444443321 1224456667788889999999999999888877766543
No 283
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.84 E-value=1.9e-09 Score=91.21 Aligned_cols=201 Identities=15% Similarity=0.255 Sum_probs=137.4
Q ss_pred eeeeCccccEEEEEECcCCCEEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCC-eEE
Q 026765 14 REYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDK-TVR 92 (233)
Q Consensus 14 ~~~~~H~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~-~i~ 92 (233)
++|..|+..-+|++|+-+.++|+.|+..|.|+++++..+. ..-...+|..+|+-+.=+.++..+|.++++.. ...
T Consensus 1095 ~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~----~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~Plsa 1170 (1516)
T KOG1832|consen 1095 RSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGS----MEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSA 1170 (1516)
T ss_pred hhhhccccceeeEEeecCCceEEeeeccceEEEEEccCcc----ccccccccccccccccccCCcceeeeeccccCchHH
Confidence 5778899999999999999999999999999999997533 22245789999999987777776666665555 567
Q ss_pred EEECCCC-eeeeeeeecCCeeEEEECCCCCeEEEEcCCCcEEEEEcCCCeeeeeeec-----CceeeEEEECCCCCEEEE
Q 026765 93 LWDARSG-KCSQQAELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKF-----GYEVNEIAWNMTGEMFFL 166 (233)
Q Consensus 93 iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~ 166 (233)
+|++... ...+.+. +--++.|+.....-+.|+......+||+.+..+...+.. .+.-+...|+|+..+++-
T Consensus 1171 LW~~~s~~~~~Hsf~---ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LIln 1247 (1516)
T KOG1832|consen 1171 LWDASSTGGPRHSFD---EDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLILN 1247 (1516)
T ss_pred HhccccccCcccccc---ccceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcceEee
Confidence 9998642 2222221 223466766544445666667789999988776554322 234577889998887653
Q ss_pred EeCCCeEEEEecCCceeeeEEeeecCceeEEEECCCCCEEEEeeCCCcEEEEecCCcEEEEeeecC
Q 026765 167 TTGNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKL 232 (233)
Q Consensus 167 ~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~las~s~dg~v~iwd~~~~~~i~~~~~~ 232 (233)
|| .+||.+..+.+..|...... ..=.|+|.|..++..+ .|||+++-..+++.+.|
T Consensus 1248 ---dG--vLWDvR~~~aIh~FD~ft~~-~~G~FHP~g~eVIINS-----EIwD~RTF~lLh~VP~L 1302 (1516)
T KOG1832|consen 1248 ---DG--VLWDVRIPEAIHRFDQFTDY-GGGGFHPSGNEVIINS-----EIWDMRTFKLLHSVPSL 1302 (1516)
T ss_pred ---Cc--eeeeeccHHHHhhhhhheec-ccccccCCCceEEeec-----hhhhhHHHHHHhcCccc
Confidence 33 57888766655544332211 1224899999888776 48998876655554443
No 284
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=98.81 E-value=1.2e-06 Score=70.96 Aligned_cols=111 Identities=18% Similarity=0.364 Sum_probs=83.1
Q ss_pred CcCcEEEEEEcCCCCCEEEEEeC-CCeEEEEECCCCeeeeeee-ecCCeeEEEECCCCCeEEEEcCC---CcEEEEEcCC
Q 026765 65 HADSVDQLCWDPKHADLIATASG-DKTVRLWDARSGKCSQQAE-LSGENINITYKPDGTHIAVGNRD---DELTILDVRK 139 (233)
Q Consensus 65 h~~~v~~~~~~~~~~~~l~sg~~-d~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~d---~~i~i~d~~~ 139 (233)
..++|.++.|+|.+..+.+.-|. -..+.|||++-. ..+. ..++..++-|+|.|++++.++.+ |.+.+||+.+
T Consensus 269 k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~~---~v~df~egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n 345 (566)
T KOG2315|consen 269 KEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRGK---PVFDFPEGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPN 345 (566)
T ss_pred CCCCceEEEECCCCCEEEEEEecccceEEEEcCCCC---EeEeCCCCCccceEECCCCCEEEEeecCCCCCceEEEeccc
Confidence 46899999999998777655444 567899998743 2223 34555678999999999887765 7899999988
Q ss_pred CeeeeeeecCceeeEEEECCCCCEEEEEeC------CCeEEEEecC
Q 026765 140 FKPIHRRKFGYEVNEIAWNMTGEMFFLTTG------NGTVEVLTYP 179 (233)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~v~~~~~~ 179 (233)
.+.+..... ...+-+.|+|+|+++++++. |+.++||++.
T Consensus 346 ~K~i~~~~a-~~tt~~eW~PdGe~flTATTaPRlrvdNg~Kiwhyt 390 (566)
T KOG2315|consen 346 RKLIAKFKA-ANTTVFEWSPDGEYFLTATTAPRLRVDNGIKIWHYT 390 (566)
T ss_pred hhhcccccc-CCceEEEEcCCCcEEEEEeccccEEecCCeEEEEec
Confidence 666654433 23456789999999998875 6788999874
No 285
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.80 E-value=2.4e-05 Score=59.55 Aligned_cols=195 Identities=15% Similarity=0.160 Sum_probs=119.3
Q ss_pred EEEECc-CCCEEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeee
Q 026765 25 SVAWNC-TGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQ 103 (233)
Q Consensus 25 ~~~~~~-~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~ 103 (233)
++.|.+ ++.++++--..+.|..|+.... ......+. . ...+++...++.++ .+...+ +.++|..+++...
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~---~~~~~~~~---~-~~G~~~~~~~g~l~-v~~~~~-~~~~d~~~g~~~~ 74 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTG---EVEVIDLP---G-PNGMAFDRPDGRLY-VADSGG-IAVVDPDTGKVTV 74 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTT---EEEEEESS---S-EEEEEEECTTSEEE-EEETTC-EEEEETTTTEEEE
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCC---eEEEEecC---C-CceEEEEccCCEEE-EEEcCc-eEEEecCCCcEEE
Confidence 567888 6666777667888888887532 22222222 2 66677773334444 455544 5555998886554
Q ss_pred eeeec--C----CeeEEEECCCCCeEEEEcCC--------CcEEEEEcCCCeeeeeeecCceeeEEEECCCCCEEE-EEe
Q 026765 104 QAELS--G----ENINITYKPDGTHIAVGNRD--------DELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFF-LTT 168 (233)
Q Consensus 104 ~~~~~--~----~~~~~~~~~~~~~l~~~~~d--------~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 168 (233)
..... . ....+++.|+|+..++.... +.+..++.. .+.......-...+.++|+++++.++ +-+
T Consensus 75 ~~~~~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~~~~~~~~pNGi~~s~dg~~lyv~ds 153 (246)
T PF08450_consen 75 LADLPDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTVVADGLGFPNGIAFSPDGKTLYVADS 153 (246)
T ss_dssp EEEEETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEEEEEEESSEEEEEEETTSSEEEEEET
T ss_pred EeeccCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEEEecCcccccceEECCcchheeeccc
Confidence 44431 1 22458999999977665543 346666655 33222222223478999999999776 456
Q ss_pred CCCeEEEEecCCc-e-e--eeEEe---eecCceeEEEECCCCCEEEEeeCCCcEEEEecCCcEEEEeee
Q 026765 169 GNGTVEVLTYPSL-R-P--LDTVV---AHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFT 230 (233)
Q Consensus 169 ~~~~v~~~~~~~~-~-~--~~~~~---~~~~~v~~i~~~p~~~~las~s~dg~v~iwd~~~~~~i~~~~ 230 (233)
..+.+..+++... . . ...+. ......-.++++.+|+++++.-..+.|.++|.+ |+.+.++.
T Consensus 154 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~~~~i~ 221 (246)
T PF08450_consen 154 FNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKLLREIE 221 (246)
T ss_dssp TTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCEEEEEE
T ss_pred ccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccEEEEEc
Confidence 7888888887421 1 1 11221 111236689999999998888889999999988 87776654
No 286
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.77 E-value=2.2e-07 Score=73.41 Aligned_cols=211 Identities=13% Similarity=0.162 Sum_probs=144.2
Q ss_pred eeeeCccccEEEEEECcCCCEEEEEeC-CCCEEEEecccCCCCc-eeeEEEecCcCcEEEEEEcCCCC----CEEEEEeC
Q 026765 14 REYTGHKKKVHSVAWNCTGTKLASGSV-DQTARVWHIEPHGHGK-VKDIELRGHADSVDQLCWDPKHA----DLIATASG 87 (233)
Q Consensus 14 ~~~~~H~~~V~~~~~~~~~~~l~s~~~-D~~v~vW~~~~~~~~~-~~~~~~~~h~~~v~~~~~~~~~~----~~l~sg~~ 87 (233)
+.+..|.+.|.+++.+-++..+.|.+. |..+|++|++....-. +...-++ .. +.|....+ .+.++.-.
T Consensus 47 KhFraHL~~I~sl~~S~dg~L~~Sv~d~Dhs~KvfDvEn~DminmiKL~~lP---g~---a~wv~skGd~~s~IAVs~~~ 120 (558)
T KOG0882|consen 47 KHFRAHLGVILSLAVSYDGWLFRSVEDPDHSVKVFDVENFDMINMIKLVDLP---GF---AEWVTSKGDKISLIAVSLFK 120 (558)
T ss_pred hhhHHHHHHHHhhhccccceeEeeccCcccceeEEEeeccchhhhcccccCC---Cc---eEEecCCCCeeeeEEeeccc
Confidence 456789999999999999999999887 9999999997543211 1111122 12 22221111 23345566
Q ss_pred CCeEEEEECCCCeeeeee---eecCCeeEEEECCCCCeEEEEcCCCcEEEEEcCC-Ce-----eeeeeec----------
Q 026765 88 DKTVRLWDARSGKCSQQA---ELSGENINITYKPDGTHIAVGNRDDELTILDVRK-FK-----PIHRRKF---------- 148 (233)
Q Consensus 88 d~~i~iwd~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~-~~-----~~~~~~~---------- 148 (233)
++.+.++|-....|.... .+..++..+.+.|.+..+++....|.|.-|.... .+ ....+++
T Consensus 121 sg~i~VvD~~~d~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~ 200 (558)
T KOG0882|consen 121 SGKIFVVDGFGDFCQDGYFKKLHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKA 200 (558)
T ss_pred CCCcEEECCcCCcCccceecccccCceEEEEeeccccceeeccccceeEeecCCCcccCccccccccccccchhhccccc
Confidence 788999998765432211 1234567788899999999999999999998762 11 1111111
Q ss_pred CceeeEEEECCCCCEEEEEeCCCeEEEEecCCceeeeEE--------------------------------eeecCc-ee
Q 026765 149 GYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTV--------------------------------VAHTAG-CY 195 (233)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~--------------------------------~~~~~~-v~ 195 (233)
.....++.++|++..+..-..|..|+++.+.+++.++.+ ..|... -.
T Consensus 201 Kt~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqeiDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~ 280 (558)
T KOG0882|consen 201 KTEPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGT 280 (558)
T ss_pred ccCccceEEccccCcccccCcccEEEEEEeccchhhhhhhccchhhhhccccccccceeehhhhhhHHhhHhhhcCcccc
Confidence 234678899999999999999999999998766433221 112221 23
Q ss_pred EEEECCCCCEEEEeeCCCcEEEEecCCcEEEEeeec
Q 026765 196 CIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTK 231 (233)
Q Consensus 196 ~i~~~p~~~~las~s~dg~v~iwd~~~~~~i~~~~~ 231 (233)
-+.|+..+++|.-|+-=| |+|.++.++++++.+.+
T Consensus 281 ~~~fdes~~flly~t~~g-ikvin~~tn~v~ri~gk 315 (558)
T KOG0882|consen 281 NAVFDESGNFLLYGTILG-IKVINLDTNTVVRILGK 315 (558)
T ss_pred eeEEcCCCCEEEeeccee-EEEEEeecCeEEEEecc
Confidence 467888899998887666 99999999999999875
No 287
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.76 E-value=9.8e-08 Score=79.65 Aligned_cols=209 Identities=21% Similarity=0.336 Sum_probs=127.2
Q ss_pred EEEEEECcCCC---EEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCCeEEEEECCCC
Q 026765 23 VHSVAWNCTGT---KLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSG 99 (233)
Q Consensus 23 V~~~~~~~~~~---~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~iwd~~~~ 99 (233)
|-.++|+|... ++++-+. ..-.+|++..... ......+.||..+|+.+-|+|..+.++++++-|-.+..||++..
T Consensus 70 vad~qws~h~a~~~wiVsts~-qkaiiwnlA~ss~-~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp 147 (1081)
T KOG0309|consen 70 VADVQWSPHPAKPYWIVSTSN-QKAIIWNLAKSSS-NAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSP 147 (1081)
T ss_pred hcceecccCCCCceeEEecCc-chhhhhhhhcCCc-cceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCC
Confidence 66788888643 5666664 4446898865333 33345678999999999999999999999999999999999987
Q ss_pred eeeee-ee-ecCCeeEEEECCCCCeEEEEcCCCcEEEEEcCCCe-eeeeeec-CceeeEEEECCC-CCEEEEEeCCCeEE
Q 026765 100 KCSQQ-AE-LSGENINITYKPDGTHIAVGNRDDELTILDVRKFK-PIHRRKF-GYEVNEIAWNMT-GEMFFLTTGNGTVE 174 (233)
Q Consensus 100 ~~~~~-~~-~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~-~~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~v~ 174 (233)
..... +. -......+.|+.....+.+.+....+.+||++.+. ++...+. -..++.+.|..- ...++..+.|++++
T Consensus 148 ~~p~ys~~~w~s~asqVkwnyk~p~vlasshg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvk 227 (1081)
T KOG0309|consen 148 HRPFYSTSSWRSAASQVKWNYKDPNVLASSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVK 227 (1081)
T ss_pred CcceeeeecccccCceeeecccCcchhhhccCCceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCcee
Confidence 53221 11 12233457776544444555556679999998643 4444332 234555555432 33567778899999
Q ss_pred EEecCCceeeeE-EeeecCceeEEEECCCCC-----------EEEEeeCCCcEEEEecCCc-EEEEeeecCC
Q 026765 175 VLTYPSLRPLDT-VVAHTAGCYCIAIDPMGR-----------YFAVGSADSLVSLWDISEM-LCVRTFTKLE 233 (233)
Q Consensus 175 ~~~~~~~~~~~~-~~~~~~~v~~i~~~p~~~-----------~las~s~dg~v~iwd~~~~-~~i~~~~~~~ 233 (233)
.|+......... ......+|+--.+-|-|. .+----.+..-..||..++ .+|++|.+|+
T Consensus 228 fw~y~kSt~e~~~~vtt~~piw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~ 299 (1081)
T KOG0309|consen 228 FWDYSKSTTESKRTVTTNFPIWRGRYLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNVFDLNTPVHTFVGHD 299 (1081)
T ss_pred eecccccccccceeccccCcceeccccccCceeEeccccCCeeeeeccccchhhhhccccCCcceeeecCcc
Confidence 999864322111 111233444444444433 1111112223344554333 5789998874
No 288
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=98.75 E-value=5.2e-08 Score=77.42 Aligned_cols=162 Identities=22% Similarity=0.353 Sum_probs=115.5
Q ss_pred EEecCcCcEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeeeeecC--CeeEEEECC--CCCeEEEEcCCCcEEEEE
Q 026765 61 ELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSG--ENINITYKP--DGTHIAVGNRDDELTILD 136 (233)
Q Consensus 61 ~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~--~~~~~~~~~--~~~~l~~~~~d~~i~i~d 136 (233)
.|.+|.++|..+.|+..+ ..|+||+.|.+|.+||...+.....+.... .+.-..|-| +...+++++.||.+++-.
T Consensus 137 kL~~H~GcVntV~FN~~G-d~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~s~ 215 (559)
T KOG1334|consen 137 KLNKHKGCVNTVHFNQRG-DVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRVSE 215 (559)
T ss_pred cccCCCCccceeeecccC-ceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCceeeee
Confidence 467899999999999875 678999999999999987776544433221 122234555 346788999999998876
Q ss_pred cCCCeeee----eeecCceeeEEEECCCCC-EEEEEeCCCeEEEEecCCceeeeEEee---ecC---ceeEEEECCCCC-
Q 026765 137 VRKFKPIH----RRKFGYEVNEIAWNMTGE-MFFLTTGNGTVEVLTYPSLRPLDTVVA---HTA---GCYCIAIDPMGR- 204 (233)
Q Consensus 137 ~~~~~~~~----~~~~~~~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~~~~~---~~~---~v~~i~~~p~~~- 204 (233)
+....... ..++..++..++.-|... -+.+.++|+.+.-+|++...+...+.. +.. ..++|+.+|...
T Consensus 216 i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~cr~~~~~~~v~L~~Ia~~P~nt~ 295 (559)
T KOG1334|consen 216 ILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFVCREADEKERVGLYTIAVDPRNTN 295 (559)
T ss_pred eccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceeeeeccCCccceeeeeEecCCCCcc
Confidence 54322221 123445677788777654 467778899999999887665544432 333 457899999776
Q ss_pred EEEEeeCCCcEEEEecCCc
Q 026765 205 YFAVGSADSLVSLWDISEM 223 (233)
Q Consensus 205 ~las~s~dg~v~iwd~~~~ 223 (233)
.+|+|+.|..++|||....
T Consensus 296 ~faVgG~dqf~RvYD~R~~ 314 (559)
T KOG1334|consen 296 EFAVGGSDQFARVYDQRRI 314 (559)
T ss_pred ccccCChhhhhhhhcccch
Confidence 7999999999999998643
No 289
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=98.74 E-value=4.4e-06 Score=70.50 Aligned_cols=206 Identities=17% Similarity=0.176 Sum_probs=138.2
Q ss_pred ceeeeCccccEEEEEECcCC------------CEEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCC---
Q 026765 13 SREYTGHKKKVHSVAWNCTG------------TKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPK--- 77 (233)
Q Consensus 13 ~~~~~~H~~~V~~~~~~~~~------------~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--- 77 (233)
++.+.-|...|+.+.|.|.. -.||++.-.|.|.+||..... ....+..|.+++..++|-+.
T Consensus 48 iqsie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s----~~~~l~~~~~~~qdl~W~~~rd~ 123 (1062)
T KOG1912|consen 48 IQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLAS----VINWLSHSNDSVQDLCWVPARDD 123 (1062)
T ss_pred hhccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhhh----hhhhhcCCCcchhheeeeeccCc
Confidence 45677899999999998731 257888889999999986422 22356678889999998653
Q ss_pred CCCEEEEEeCCCeEEEEECCCCeeeeeeeecCCee-EEEECC-CCCeEEEEcCCCcEEEEEcCCC----eeeeee--ecC
Q 026765 78 HADLIATASGDKTVRLWDARSGKCSQQAELSGENI-NITYKP-DGTHIAVGNRDDELTILDVRKF----KPIHRR--KFG 149 (233)
Q Consensus 78 ~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~-~~~~~~-~~~~l~~~~~d~~i~i~d~~~~----~~~~~~--~~~ 149 (233)
...+|+.-....++.+|+..+|+..........+. ++.++| |.+.+..-+..|.+.+.+.-.. .+.+.. ...
T Consensus 124 Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk~~qI~sd 203 (1062)
T KOG1912|consen 124 SRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGKEFQITSD 203 (1062)
T ss_pred chheeEEecCCcEEEEEEccCCceeeccccCCcceeeeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCceeEEEecC
Confidence 23567777778899999999998655444444433 466777 5566766666676666653211 011111 100
Q ss_pred c------------------e---------eeEEEECCCCCEEEEEeCCCeEEEEecCCceeeeEEeeecCceeEEEECCC
Q 026765 150 Y------------------E---------VNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPM 202 (233)
Q Consensus 150 ~------------------~---------~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~i~~~p~ 202 (233)
+ . ...++|+|.-+.++...-...+.++|++-..++....-..+.+.-+.+-|+
T Consensus 204 ~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~prellv~dle~~~~l~vvpier~~akfv~vlP~ 283 (1062)
T KOG1912|consen 204 HSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFITFPRELLVFDLEYECCLAVVPIERGGAKFVDVLPD 283 (1062)
T ss_pred ccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEEEEeccceEEEcchhhceeEEEEeccCCcceeEeccC
Confidence 0 0 112456777666777777778899998766666665555555566777776
Q ss_pred C--CEEEEeeCCCcEEEEecCC
Q 026765 203 G--RYFAVGSADSLVSLWDISE 222 (233)
Q Consensus 203 ~--~~las~s~dg~v~iwd~~~ 222 (233)
. ..|.+.-.||.+.||-.+.
T Consensus 284 ~~rd~LfclH~nG~ltirvrk~ 305 (1062)
T KOG1912|consen 284 PRRDALFCLHSNGRLTIRVRKE 305 (1062)
T ss_pred CCcceEEEEecCCeEEEEEeec
Confidence 6 4688999999999997665
No 290
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.74 E-value=2.5e-05 Score=58.88 Aligned_cols=186 Identities=18% Similarity=0.188 Sum_probs=114.9
Q ss_pred cCCCEEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeee-eec
Q 026765 30 CTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQA-ELS 108 (233)
Q Consensus 30 ~~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~-~~~ 108 (233)
+++..+++++.++.+..||..+.. ......+.+...... .. .+ ..++.+..++.+..+|..+++..... ...
T Consensus 34 ~~~~~v~~~~~~~~l~~~d~~tG~--~~W~~~~~~~~~~~~--~~--~~-~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~ 106 (238)
T PF13360_consen 34 PDGGRVYVASGDGNLYALDAKTGK--VLWRFDLPGPISGAP--VV--DG-GRVYVGTSDGSLYALDAKTGKVLWSIYLTS 106 (238)
T ss_dssp EETTEEEEEETTSEEEEEETTTSE--EEEEEECSSCGGSGE--EE--ET-TEEEEEETTSEEEEEETTTSCEEEEEEE-S
T ss_pred EeCCEEEEEcCCCEEEEEECCCCC--EEEEeecccccccee--ee--cc-cccccccceeeeEecccCCcceeeeecccc
Confidence 357778888899999999986432 222233322211111 11 22 34566778889999999999876653 221
Q ss_pred CC----eeEEEECCCCCeEEEEcCCCcEEEEEcCCCeeeeeeecCcee------------eEEEECCCCCEEEEEeCCCe
Q 026765 109 GE----NINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEV------------NEIAWNMTGEMFFLTTGNGT 172 (233)
Q Consensus 109 ~~----~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~ 172 (233)
.+ .........+..++++..++.+..+|+++++.+.......+. ..+.+. ++ .+.+...++.
T Consensus 107 ~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~v~~~~~~g~ 184 (238)
T PF13360_consen 107 SPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVIS-DG-RVYVSSGDGR 184 (238)
T ss_dssp SCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEECC-TT-EEEEECCTSS
T ss_pred ccccccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEeecCCCCCCcceeeecccccceEEE-CC-EEEEEcCCCe
Confidence 11 111222233778888888999999999999887666542211 122222 33 7777777775
Q ss_pred EEEEecCCceeeeEEeeecCceeEEEECCCCCEEEEeeCCCcEEEEecCCcEEEE
Q 026765 173 VEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVR 227 (233)
Q Consensus 173 v~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~las~s~dg~v~iwd~~~~~~i~ 227 (233)
+..+|..+++..-... ...+..+ ..+.+..|+.++.++.|..||+++++.+=
T Consensus 185 ~~~~d~~tg~~~w~~~--~~~~~~~-~~~~~~~l~~~~~~~~l~~~d~~tG~~~W 236 (238)
T PF13360_consen 185 VVAVDLATGEKLWSKP--ISGIYSL-PSVDGGTLYVTSSDGRLYALDLKTGKVVW 236 (238)
T ss_dssp EEEEETTTTEEEEEEC--SS-ECEC-EECCCTEEEEEETTTEEEEEETTTTEEEE
T ss_pred EEEEECCCCCEEEEec--CCCccCC-ceeeCCEEEEEeCCCEEEEEECCCCCEEe
Confidence 4444988887553221 2222221 44677888888899999999999998764
No 291
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=98.72 E-value=5.8e-06 Score=73.73 Aligned_cols=199 Identities=16% Similarity=0.219 Sum_probs=125.9
Q ss_pred ccccEEEEEECcCCCEEEEEeCCCCEEEEecccCCCCceeeEEEec-CcCcEEEEEEcCCCCCEEEEEeCCCeEEEEECC
Q 026765 19 HKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRG-HADSVDQLCWDPKHADLIATASGDKTVRLWDAR 97 (233)
Q Consensus 19 H~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~-h~~~v~~~~~~~~~~~~l~sg~~d~~i~iwd~~ 97 (233)
..+.|.++.|-++...++.+..+|.|.+...+..... ...+.-| -...|.+++|+|++ .+|+....++++.+-+-.
T Consensus 74 ~~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~--~~~E~VG~vd~GI~a~~WSPD~-Ella~vT~~~~l~~mt~~ 150 (928)
T PF04762_consen 74 PNDKIVSFQYLADSESLCIALASGDIILVREDPDPDE--DEIEIVGSVDSGILAASWSPDE-ELLALVTGEGNLLLMTRD 150 (928)
T ss_pred CCCcEEEEEeccCCCcEEEEECCceEEEEEccCCCCC--ceeEEEEEEcCcEEEEEECCCc-CEEEEEeCCCEEEEEecc
Confidence 3567999999999999999999999999833221111 1122222 45689999999985 567677777777654221
Q ss_pred ---------------CCeee--------eee-------------------------eecCCeeEEEECCCCCeEEEEcC-
Q 026765 98 ---------------SGKCS--------QQA-------------------------ELSGENINITYKPDGTHIAVGNR- 128 (233)
Q Consensus 98 ---------------~~~~~--------~~~-------------------------~~~~~~~~~~~~~~~~~l~~~~~- 128 (233)
..+.+ .++ ........++|..||.++|+.+-
T Consensus 151 fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s~dd~~~~ISWRGDG~yFAVss~~ 230 (928)
T PF04762_consen 151 FDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLSWDDGRVRISWRGDGEYFAVSSVE 230 (928)
T ss_pred ceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccccCCCceEEEECCCCcEEEEEEEE
Confidence 00000 000 01112345889999999997764
Q ss_pred --C---CcEEEEEcCCCeeeeeee-cCceeeEEEECCCCCEEEEEeC--CCeEEEEecCCceeeeEEe----eecCceeE
Q 026765 129 --D---DELTILDVRKFKPIHRRK-FGYEVNEIAWNMTGEMFFLTTG--NGTVEVLTYPSLRPLDTVV----AHTAGCYC 196 (233)
Q Consensus 129 --d---~~i~i~d~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~--~~~v~~~~~~~~~~~~~~~----~~~~~v~~ 196 (233)
. ..+++|+-+ +....... ...--..++|.|.|+++++... +...-++-.+++.....|. .....|..
T Consensus 231 ~~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfErNGLrhgeF~l~~~~~~~~v~~ 309 (928)
T PF04762_consen 231 PETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFERNGLRHGEFTLRFDPEEEKVIE 309 (928)
T ss_pred cCCCceeEEEEECCC-ceEEeccccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEecCCcEeeeEecCCCCCCceeeE
Confidence 2 468899854 33322211 1222356899999999988764 2222233334444444433 34567899
Q ss_pred EEECCCCCEEEEeeCCCcEEEEecCC
Q 026765 197 IAIDPMGRYFAVGSADSLVSLWDISE 222 (233)
Q Consensus 197 i~~~p~~~~las~s~dg~v~iwd~~~ 222 (233)
++|++++..||.--.|. |.+|-...
T Consensus 310 l~Wn~ds~iLAv~~~~~-vqLWt~~N 334 (928)
T PF04762_consen 310 LAWNSDSEILAVWLEDR-VQLWTRSN 334 (928)
T ss_pred EEECCCCCEEEEEecCC-ceEEEeeC
Confidence 99999999999988666 99997653
No 292
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.72 E-value=5e-06 Score=70.78 Aligned_cols=201 Identities=10% Similarity=0.156 Sum_probs=128.3
Q ss_pred cEEEEEECcCCCEEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCCe-----EEEEEC
Q 026765 22 KVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKT-----VRLWDA 96 (233)
Q Consensus 22 ~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~-----i~iwd~ 96 (233)
.|+| |++.+..+|-|+.||.|.+.+-.. . ....+..+...+...-+..++..+|++-+.|+. ++|||+
T Consensus 27 ~isc--~~s~~~~vvigt~~G~V~~Ln~s~----~-~~~~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~l 99 (933)
T KOG2114|consen 27 AISC--CSSSTGSVVIGTADGRVVILNSSF----Q-LIRGFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDL 99 (933)
T ss_pred ceeE--EcCCCceEEEeeccccEEEecccc----e-eeehheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecc
Confidence 5555 458899999999999987765321 1 112345555553333344455678888777654 899998
Q ss_pred CCC------eeee---eeee-----cCCeeEEEECCCCCeEEEEcCCCcEEEEEc---CC--CeeeeeeecCceeeEEEE
Q 026765 97 RSG------KCSQ---QAEL-----SGENINITYKPDGTHIAVGNRDDELTILDV---RK--FKPIHRRKFGYEVNEIAW 157 (233)
Q Consensus 97 ~~~------~~~~---~~~~-----~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~---~~--~~~~~~~~~~~~~~~~~~ 157 (233)
..- .+.. .... +.+...++.+.+-+.+++|-.+|.|..+.- |. .+.......+.+|+.+.+
T Consensus 100 ek~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~ 179 (933)
T KOG2114|consen 100 EKVDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLAL 179 (933)
T ss_pred cccCCCCCcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEE
Confidence 532 2331 1111 122345788888889999999999988852 11 111112223568999999
Q ss_pred CCCCCEEEEEeCCCeEEEEecCCcee-eeEEeeecCceeEEEECCCCCEEEEeeCCCcEEEEecCCcEEEEeee
Q 026765 158 NMTGEMFFLTTGNGTVEVLTYPSLRP-LDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFT 230 (233)
Q Consensus 158 ~~~~~~~~~~~~~~~v~~~~~~~~~~-~~~~~~~~~~v~~i~~~p~~~~las~s~dg~v~iwd~~~~~~i~~~~ 230 (233)
..+++..+-......|..|......+ ...+..|+.+.+|.++++....+++|+ +..+.+|+.....+.-+|.
T Consensus 180 ~~d~~s~lFv~Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t~qfIca~-~e~l~fY~sd~~~~cfaf~ 252 (933)
T KOG2114|consen 180 RSDGKSVLFVATTEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGTYQFICAG-SEFLYFYDSDGRGPCFAFE 252 (933)
T ss_pred ecCCceeEEEEecceeEEEEecCCCcceeeeccCCccceeeecCCCCccEEEec-CceEEEEcCCCcceeeeec
Confidence 98888844444455688887763222 333667888899999987655455444 4569999998776666665
No 293
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=98.72 E-value=1.3e-05 Score=71.52 Aligned_cols=199 Identities=17% Similarity=0.281 Sum_probs=122.1
Q ss_pred ccccEEEEEECcCCCEEEEEeCCCCEEEEe----ccc------CCCC--c-------eeeEEEec---------------
Q 026765 19 HKKKVHSVAWNCTGTKLASGSVDQTARVWH----IEP------HGHG--K-------VKDIELRG--------------- 64 (233)
Q Consensus 19 H~~~V~~~~~~~~~~~l~s~~~D~~v~vW~----~~~------~~~~--~-------~~~~~~~~--------------- 64 (233)
-...|.|++||||+..|+-+..++++.+-. +-. ...+ . .+..++.|
T Consensus 119 vd~GI~a~~WSPD~Ella~vT~~~~l~~mt~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~ 198 (928)
T PF04762_consen 119 VDSGILAASWSPDEELLALVTGEGNLLLMTRDFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTV 198 (928)
T ss_pred EcCcEEEEEECCCcCEEEEEeCCCEEEEEeccceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCC
Confidence 467899999999999998888888876643 210 0000 0 00011111
Q ss_pred ---------CcCcEEEEEEcCCCCCEEEEEeC---C---CeEEEEECCCCeeeeeee-ecCCeeEEEECCCCCeEEEEcC
Q 026765 65 ---------HADSVDQLCWDPKHADLIATASG---D---KTVRLWDARSGKCSQQAE-LSGENINITYKPDGTHIAVGNR 128 (233)
Q Consensus 65 ---------h~~~v~~~~~~~~~~~~l~sg~~---d---~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~ 128 (233)
+.+.-..++|-.+|. ++|..+- . ..+|||+-. |......+ ..+-...++|.|.|+.||+...
T Consensus 199 ~~~d~~~~s~dd~~~~ISWRGDG~-yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE~v~gLe~~l~WrPsG~lIA~~q~ 276 (928)
T PF04762_consen 199 PKVDEGKLSWDDGRVRISWRGDGE-YFAVSSVEPETGSRRVIRVYSRE-GELQSTSEPVDGLEGALSWRPSGNLIASSQR 276 (928)
T ss_pred CccccCccccCCCceEEEECCCCc-EEEEEEEEcCCCceeEEEEECCC-ceEEeccccCCCccCCccCCCCCCEEEEEEE
Confidence 223455788988764 5544432 2 578999965 54433222 2333456899999999998765
Q ss_pred ---CCcEEEEEcCCCeeeeeee-----cCceeeEEEECCCCCEEEEEeCCCeEEEEecCCce-eeeEEe--eecCceeEE
Q 026765 129 ---DDELTILDVRKFKPIHRRK-----FGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLR-PLDTVV--AHTAGCYCI 197 (233)
Q Consensus 129 ---d~~i~i~d~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~--~~~~~v~~i 197 (233)
...|.+|.- ++-...... ....+..+.|+.++..+++...+. +++|...+.. .++... .....+..+
T Consensus 277 ~~~~~~VvFfEr-NGLrhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~~~~~~~~ 354 (928)
T PF04762_consen 277 LPDRHDVVFFER-NGLRHGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQEIRFSSSESVNFV 354 (928)
T ss_pred cCCCcEEEEEec-CCcEeeeEecCCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCEEEEEEEEEccCCCCCCce
Confidence 234666663 222222222 234688999999999999988665 9999876644 222211 122334559
Q ss_pred EECCCCC-EEEEeeCCCcEEEEecC
Q 026765 198 AIDPMGR-YFAVGSADSLVSLWDIS 221 (233)
Q Consensus 198 ~~~p~~~-~las~s~dg~v~iwd~~ 221 (233)
.|+|... .|...+.+|.+..++..
T Consensus 355 ~Wdpe~p~~L~v~t~~g~~~~~~~~ 379 (928)
T PF04762_consen 355 KWDPEKPLRLHVLTSNGQYEIYDFA 379 (928)
T ss_pred EECCCCCCEEEEEecCCcEEEEEEE
Confidence 9999654 47777777777666643
No 294
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.70 E-value=5.3e-09 Score=85.61 Aligned_cols=201 Identities=19% Similarity=0.277 Sum_probs=129.2
Q ss_pred ccccEEEEEECcCCC--EEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeC----CCeEE
Q 026765 19 HKKKVHSVAWNCTGT--KLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASG----DKTVR 92 (233)
Q Consensus 19 H~~~V~~~~~~~~~~--~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~----d~~i~ 92 (233)
...-+.|++++.+.+ .++.|..+|.|-+=.+...-.. .....++|...+++++|++-+.+.||.|-. |..+.
T Consensus 55 dtqy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdS--s~E~tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~ 132 (783)
T KOG1008|consen 55 DTQYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDS--SAEVTPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLK 132 (783)
T ss_pred cCCCceeehhhcCCchhhhhhccccCceEEeecCCcccc--cceecccccccccccccccccHHHHHhhhhhhcccCCcc
Confidence 355678888876554 6788889999988765321111 112357888999999999987788877633 56789
Q ss_pred EEECCCC--eeeeeeeecC----CeeEEEECCCCCeEEEEcCCCcEEEEEcCCCeeeeeeecCceeeEEEECC-CCCEEE
Q 026765 93 LWDARSG--KCSQQAELSG----ENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNM-TGEMFF 165 (233)
Q Consensus 93 iwd~~~~--~~~~~~~~~~----~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 165 (233)
|||+.++ .+.....+.+ ....++|..+.+.+.+|....++.++|+|........-....+..+...| .+++++
T Consensus 133 Iwdi~s~ltvPke~~~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRqs~~~~~svnTk~vqG~tVdp~~~nY~c 212 (783)
T KOG1008|consen 133 IWDINSLLTVPKESPLFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQSLDSVSSVNTKYVQGITVDPFSPNYFC 212 (783)
T ss_pred ceecccccCCCccccccccccccCccccccccCcchhhcccccchhhhhhhhhhhhhhhhhhhhhcccceecCCCCCcee
Confidence 9999776 2222222211 12357777787888889989999999998422111111112345566677 566666
Q ss_pred EEeCCCeEEEEe-cCCce-eeeEEe----eecCceeEEEECCCCC-EEEEeeCC-CcEEEEecCC
Q 026765 166 LTTGNGTVEVLT-YPSLR-PLDTVV----AHTAGCYCIAIDPMGR-YFAVGSAD-SLVSLWDISE 222 (233)
Q Consensus 166 ~~~~~~~v~~~~-~~~~~-~~~~~~----~~~~~v~~i~~~p~~~-~las~s~d-g~v~iwd~~~ 222 (233)
... +|.+.+|| ....+ ++..+. .....+..++|.|..+ .+++.+.| ++|+.+|+..
T Consensus 213 s~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtglla~l~RdS~tIrlydi~~ 276 (783)
T KOG1008|consen 213 SNS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGLLAVLSRDSITIRLYDICV 276 (783)
T ss_pred ccc-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcchhhhhccCcceEEEecccc
Confidence 655 99999999 33322 221111 1223488999999654 56777765 7899999863
No 295
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.68 E-value=9.9e-07 Score=75.35 Aligned_cols=179 Identities=15% Similarity=0.214 Sum_probs=123.0
Q ss_pred CCEEEEEeCCCCEEEEecccCCCCceeeEEEecC-cCcEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeeeeecCC
Q 026765 32 GTKLASGSVDQTARVWHIEPHGHGKVKDIELRGH-ADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGE 110 (233)
Q Consensus 32 ~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h-~~~v~~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~ 110 (233)
...++-|+.-..+...|+.... ..+.... ...|.-+.. +.+++++|...|+|.+-|.++-+..+++..+..
T Consensus 147 ~~~~i~Gg~Q~~li~~Dl~~~~-----e~r~~~v~a~~v~imR~---Nnr~lf~G~t~G~V~LrD~~s~~~iht~~aHs~ 218 (1118)
T KOG1275|consen 147 PSTLIMGGLQEKLIHIDLNTEK-----ETRTTNVSASGVTIMRY---NNRNLFCGDTRGTVFLRDPNSFETIHTFDAHSG 218 (1118)
T ss_pred Ccceeecchhhheeeeecccce-----eeeeeeccCCceEEEEe---cCcEEEeecccceEEeecCCcCceeeeeecccc
Confidence 3455566666666666665321 1111111 123555554 346788999999999999998887777655433
Q ss_pred eeEEEECCCCCeEEEEcC---------CCcEEEEEcCCCeeeeeeecCceeeEEEECCCC-CEEEEEeCCCeEEEEec--
Q 026765 111 NINITYKPDGTHIAVGNR---------DDELTILDVRKFKPIHRRKFGYEVNEIAWNMTG-EMFFLTTGNGTVEVLTY-- 178 (233)
Q Consensus 111 ~~~~~~~~~~~~l~~~~~---------d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~v~~~~~-- 178 (233)
. -..|+-.|+.|++++. |.-+++||+|+.+.+.-+.+.....-+.|+|.- ..+++.+..|...+.|.
T Consensus 219 s-iSDfDv~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P~flrf~Psl~t~~~V~S~sGq~q~vd~~~ 297 (1118)
T KOG1275|consen 219 S-ISDFDVQGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGPQFLRFHPSLTTRLAVTSQSGQFQFVDTAT 297 (1118)
T ss_pred c-eeeeeccCCeEEEeecccccccccccchhhhhhhhhhhccCCcccccCchhhhhcccccceEEEEecccceeeccccc
Confidence 2 2456778899998876 445789999998877666665555667777764 45677888899999883
Q ss_pred -CCc-eeeeEEeeecCceeEEEECCCCCEEEEeeCCCcEEEEe
Q 026765 179 -PSL-RPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWD 219 (233)
Q Consensus 179 -~~~-~~~~~~~~~~~~v~~i~~~p~~~~las~s~dg~v~iwd 219 (233)
.+. ..+..+...+..+..+.++++++.||.|..+|.|.+|-
T Consensus 298 lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 298 LSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWA 340 (1118)
T ss_pred cCCCccceeEEccCCCcceeEEecCCCceEEEecccCcEeeec
Confidence 222 22333344456688999999999999999999999997
No 296
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=98.64 E-value=1.5e-05 Score=59.30 Aligned_cols=182 Identities=13% Similarity=0.135 Sum_probs=118.4
Q ss_pred EEEEEeCCCCEEEEecccCCCCceeeEEEecCcCc--EEEEEEcCCCCCEEEEEeCCCeEEEEECCCCee----eeeeee
Q 026765 34 KLASGSVDQTARVWHIEPHGHGKVKDIELRGHADS--VDQLCWDPKHADLIATASGDKTVRLWDARSGKC----SQQAEL 107 (233)
Q Consensus 34 ~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~--v~~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~----~~~~~~ 107 (233)
.+.-++.|.++|+.+++-..... .-|... +..++++++ +.++++.+....|..|.+..... ......
T Consensus 130 ~~~i~sndht~k~~~~~~~s~~~------~~h~~~~~~ns~~~snd-~~~~~~Vgds~~Vf~y~id~~sey~~~~~~a~t 202 (344)
T KOG4532|consen 130 PLNIASNDHTGKTMVVSGDSNKF------AVHNQNLTQNSLHYSND-PSWGSSVGDSRRVFRYAIDDESEYIENIYEAPT 202 (344)
T ss_pred ceeeccCCcceeEEEEecCcccc------eeeccccceeeeEEcCC-CceEEEecCCCcceEEEeCCccceeeeeEeccc
Confidence 46778889999999886432211 123332 778899987 46888888889999998865432 122223
Q ss_pred cCCeeEEEECCCCCeEEEEcCCCcEEEEEcCCCeeeeeee------cCceeeEEEECCCCC--EEEEEeCCCeEEEEecC
Q 026765 108 SGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRK------FGYEVNEIAWNMTGE--MFFLTTGNGTVEVLTYP 179 (233)
Q Consensus 108 ~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~------~~~~~~~~~~~~~~~--~~~~~~~~~~v~~~~~~ 179 (233)
.....+..|+.....+|++..||.+.|||+|.....+... +...+..+.|++-|. ++...-.-+.+++.|.+
T Consensus 203 ~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R 282 (344)
T KOG4532|consen 203 SDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTR 282 (344)
T ss_pred CCCceeeeeccCcceEEEEecCCcEEEEEecccccchhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcc
Confidence 4556789999999999999999999999998654322211 234577888887553 45556667889999988
Q ss_pred CceeeeEEee-------ecC-ceeEEEECCCCCEEEEeeCCCcEEEEecCCc
Q 026765 180 SLRPLDTVVA-------HTA-GCYCIAIDPMGRYFAVGSADSLVSLWDISEM 223 (233)
Q Consensus 180 ~~~~~~~~~~-------~~~-~v~~i~~~p~~~~las~s~dg~v~iwd~~~~ 223 (233)
+.+-...+.. |.. .|+.-.|+.++.-..+.+++. +.=|++.+.
T Consensus 283 ~~~~~q~I~i~~d~~~~~~tq~ifgt~f~~~n~s~~v~~e~~-~ae~ni~sr 333 (344)
T KOG4532|consen 283 NYVNHQVIVIPDDVERKHNTQHIFGTNFNNENESNDVKNELQ-GAEYNILSR 333 (344)
T ss_pred cCceeeEEecCccccccccccccccccccCCCcccccccchh-hheeecccc
Confidence 7654433322 222 255566666665544444332 344555543
No 297
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.64 E-value=3.1e-06 Score=66.15 Aligned_cols=81 Identities=15% Similarity=0.239 Sum_probs=67.6
Q ss_pred eeeCccccEEEEEECcCCC-EEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCCeEEE
Q 026765 15 EYTGHKKKVHSVAWNCTGT-KLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRL 93 (233)
Q Consensus 15 ~~~~H~~~V~~~~~~~~~~-~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~i 93 (233)
.+.+|...|..++|+|..+ ++..++.+.+|+|.|+++.. ....+..+ ..+-+++|..+..++|+.|..+|.|.|
T Consensus 188 ~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~----~vssy~a~-~~~wSC~wDlde~h~IYaGl~nG~Vlv 262 (463)
T KOG1645|consen 188 ILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSC----VVSSYIAY-NQIWSCCWDLDERHVIYAGLQNGMVLV 262 (463)
T ss_pred cccccchhhhhhccCccccceeeeeccCceEEEEecccce----eeeheecc-CCceeeeeccCCcceeEEeccCceEEE
Confidence 4568899999999999987 78889999999999997633 12233345 788999999999999999999999999
Q ss_pred EECCCCe
Q 026765 94 WDARSGK 100 (233)
Q Consensus 94 wd~~~~~ 100 (233)
||++..+
T Consensus 263 yD~R~~~ 269 (463)
T KOG1645|consen 263 YDMRQPE 269 (463)
T ss_pred EEccCCC
Confidence 9998764
No 298
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.63 E-value=9e-05 Score=56.38 Aligned_cols=178 Identities=19% Similarity=0.206 Sum_probs=109.1
Q ss_pred EEEEEEC-cCCCEEEEEeCCCCEEEEecccCCCCceeeEEEe--c-CcCcEEEEEEcCCCCCEEEEEeCC--------Ce
Q 026765 23 VHSVAWN-CTGTKLASGSVDQTARVWHIEPHGHGKVKDIELR--G-HADSVDQLCWDPKHADLIATASGD--------KT 90 (233)
Q Consensus 23 V~~~~~~-~~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~--~-h~~~v~~~~~~~~~~~~l~sg~~d--------~~ 90 (233)
...+++. +++ .|+.+..++ +.++|+..... ....... . .....+.+++.|++ ++.++-... +.
T Consensus 42 ~~G~~~~~~~g-~l~v~~~~~-~~~~d~~~g~~--~~~~~~~~~~~~~~~~ND~~vd~~G-~ly~t~~~~~~~~~~~~g~ 116 (246)
T PF08450_consen 42 PNGMAFDRPDG-RLYVADSGG-IAVVDPDTGKV--TVLADLPDGGVPFNRPNDVAVDPDG-NLYVTDSGGGGASGIDPGS 116 (246)
T ss_dssp EEEEEEECTTS-EEEEEETTC-EEEEETTTTEE--EEEEEEETTCSCTEEEEEEEE-TTS--EEEEEECCBCTTCGGSEE
T ss_pred CceEEEEccCC-EEEEEEcCc-eEEEecCCCcE--EEEeeccCCCcccCCCceEEEcCCC-CEEEEecCCCccccccccc
Confidence 5566776 554 444445444 45557654221 1112221 1 23467899999986 466665543 45
Q ss_pred EEEEECCCCeeeeeeeecCCeeEEEECCCCCeEE-EEcCCCcEEEEEcCCCee-ee------eeecCc-eeeEEEECCCC
Q 026765 91 VRLWDARSGKCSQQAELSGENINITYKPDGTHIA-VGNRDDELTILDVRKFKP-IH------RRKFGY-EVNEIAWNMTG 161 (233)
Q Consensus 91 i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~d~~i~i~d~~~~~~-~~------~~~~~~-~~~~~~~~~~~ 161 (233)
|..++.. ++.......-.....++|+|+++.|. +-+..+.|..+++..... +. ...... ....+++..+|
T Consensus 117 v~~~~~~-~~~~~~~~~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G 195 (246)
T PF08450_consen 117 VYRIDPD-GKVTVVADGLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDG 195 (246)
T ss_dssp EEEEETT-SEEEEEEEEESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS
T ss_pred eEEECCC-CeEEEEecCcccccceEECCcchheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCC
Confidence 6666766 44433333334456799999998775 566778888888853221 11 111111 36789999999
Q ss_pred CEEEEEeCCCeEEEEecCCceeeeEEeeecCceeEEEE-CCCCCEEE
Q 026765 162 EMFFLTTGNGTVEVLTYPSLRPLDTVVAHTAGCYCIAI-DPMGRYFA 207 (233)
Q Consensus 162 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~i~~-~p~~~~la 207 (233)
+++++....+.|.+++.+ ++.+..+......+++++| .|+.+.|.
T Consensus 196 ~l~va~~~~~~I~~~~p~-G~~~~~i~~p~~~~t~~~fgg~~~~~L~ 241 (246)
T PF08450_consen 196 NLWVADWGGGRIVVFDPD-GKLLREIELPVPRPTNCAFGGPDGKTLY 241 (246)
T ss_dssp -EEEEEETTTEEEEEETT-SCEEEEEE-SSSSEEEEEEESTTSSEEE
T ss_pred CEEEEEcCCCEEEEECCC-ccEEEEEcCCCCCEEEEEEECCCCCEEE
Confidence 999988899999999976 7777777665568899999 46655543
No 299
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=98.61 E-value=1.2e-05 Score=65.06 Aligned_cols=145 Identities=14% Similarity=0.165 Sum_probs=94.4
Q ss_pred EEEEEeCCCeEEEEECCCCeeeeeeeecCCe--------eEEEECC--CCCeEEEEcCCCcEEEEEcCCCeeeeeeecCc
Q 026765 81 LIATASGDKTVRLWDARSGKCSQQAELSGEN--------INITYKP--DGTHIAVGNRDDELTILDVRKFKPIHRRKFGY 150 (233)
Q Consensus 81 ~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~--------~~~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~ 150 (233)
.++.+..++.+..+|.++++........... ..+.-+| .+..+.+++.++.+..+|+.+++.+.......
T Consensus 192 ~v~~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG~~~W~~~~~~ 271 (377)
T TIGR03300 192 GVLVGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRSGRVLWKRDASS 271 (377)
T ss_pred EEEEECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEECCCCcEEEeeccCC
Confidence 5667888899999999888754432221100 0000011 34577778889999999998877665544221
Q ss_pred eeeEEEECCCCCEEEEEeCCCeEEEEecCCceeeeEEeeecCc-eeEEEECCCCCEEEEeeCCCcEEEEecCCcEEEEee
Q 026765 151 EVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAHTAG-CYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTF 229 (233)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~-v~~i~~~p~~~~las~s~dg~v~iwd~~~~~~i~~~ 229 (233)
. .. ....++.+++++.+|.+..+|..+++.+-........ ..+... .+..|.+++.||.|.++|..+++.+.++
T Consensus 272 ~-~~--p~~~~~~vyv~~~~G~l~~~d~~tG~~~W~~~~~~~~~~ssp~i--~g~~l~~~~~~G~l~~~d~~tG~~~~~~ 346 (377)
T TIGR03300 272 Y-QG--PAVDDNRLYVTDADGVVVALDRRSGSELWKNDELKYRQLTAPAV--VGGYLVVGDFEGYLHWLSREDGSFVARL 346 (377)
T ss_pred c-cC--ceEeCCEEEEECCCCeEEEEECCCCcEEEccccccCCccccCEE--ECCEEEEEeCCCEEEEEECCCCCEEEEE
Confidence 1 11 1235677888889999999999888766443221111 111122 3568899999999999999999988776
Q ss_pred e
Q 026765 230 T 230 (233)
Q Consensus 230 ~ 230 (233)
+
T Consensus 347 ~ 347 (377)
T TIGR03300 347 K 347 (377)
T ss_pred E
Confidence 5
No 300
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.61 E-value=2.2e-06 Score=72.32 Aligned_cols=151 Identities=13% Similarity=0.104 Sum_probs=109.1
Q ss_pred cCcEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeeeeecCCeeEEEECCCCCeEEEEcCCCcEEEEEcCCCeeeee
Q 026765 66 ADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHR 145 (233)
Q Consensus 66 ~~~v~~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~ 145 (233)
.+.+++++++ .++++-|.-+|.|.+++....- .....+.+. ..+|.++++|+.||++.|..+.+.+..+.
T Consensus 39 ~D~is~~av~---~~~~~~GtH~g~v~~~~~~~~~--~~~~~~s~~-----~~~Gey~asCS~DGkv~I~sl~~~~~~~~ 108 (846)
T KOG2066|consen 39 NDAISCCAVH---DKFFALGTHRGAVYLTTCQGNP--KTNFDHSSS-----ILEGEYVASCSDDGKVVIGSLFTDDEITQ 108 (846)
T ss_pred hhHHHHHHhh---cceeeeccccceEEEEecCCcc--ccccccccc-----ccCCceEEEecCCCcEEEeeccCCcccee
Confidence 3456677765 3678899999999999875432 111111111 56899999999999999999988888888
Q ss_pred eecCceeeEEEECCC-----CCEEEEEeCCCeEEEEecCC--ceeeeEEeeecCceeEEEECCCCCEEEEeeCCCcEEEE
Q 026765 146 RKFGYEVNEIAWNMT-----GEMFFLTTGNGTVEVLTYPS--LRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLW 218 (233)
Q Consensus 146 ~~~~~~~~~~~~~~~-----~~~~~~~~~~~~v~~~~~~~--~~~~~~~~~~~~~v~~i~~~p~~~~las~s~dg~v~iw 218 (233)
..+..++.+++++|+ .+.+++|+..| +.++.-.= .+.-..+....++|.+|.|. |+++|=++.+| |+||
T Consensus 109 ~df~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W~--g~lIAWand~G-v~vy 184 (846)
T KOG2066|consen 109 YDFKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKWR--GNLIAWANDDG-VKVY 184 (846)
T ss_pred EecCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEEec--CcEEEEecCCC-cEEE
Confidence 888889999999998 56788888888 55553211 11111344456789999995 66888777666 9999
Q ss_pred ecCCcEEEEeee
Q 026765 219 DISEMLCVRTFT 230 (233)
Q Consensus 219 d~~~~~~i~~~~ 230 (233)
|......+...+
T Consensus 185 d~~~~~~l~~i~ 196 (846)
T KOG2066|consen 185 DTPTRQRLTNIP 196 (846)
T ss_pred eccccceeeccC
Confidence 999887765543
No 301
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=98.60 E-value=0.00014 Score=57.70 Aligned_cols=171 Identities=12% Similarity=0.043 Sum_probs=97.5
Q ss_pred CCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEe---------CCCeEEEEECCCCeeeeeeeecCCe-
Q 026765 42 QTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATAS---------GDKTVRLWDARSGKCSQQAELSGEN- 111 (233)
Q Consensus 42 ~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~---------~d~~i~iwd~~~~~~~~~~~~~~~~- 111 (233)
++|.|.|..... .+. .++.-..+- .+ ++|++..+.++.+ .+..|.+||..+.+..........+
T Consensus 27 ~~v~ViD~~~~~--v~g--~i~~G~~P~-~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~p~ 100 (352)
T TIGR02658 27 TQVYTIDGEAGR--VLG--MTDGGFLPN-PV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEGPR 100 (352)
T ss_pred ceEEEEECCCCE--EEE--EEEccCCCc-ee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCCch
Confidence 788888876421 111 122111222 24 8898877666777 6899999999999887776654332
Q ss_pred -------eEEEECCCCCeEEEEcC--CCcEEEEEcCCCeeeeeeecCceeeEEEECCCCCEEEEEeCCCeEEEEecCC-c
Q 026765 112 -------INITYKPDGTHIAVGNR--DDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPS-L 181 (233)
Q Consensus 112 -------~~~~~~~~~~~l~~~~~--d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~ 181 (233)
..++++|||+++++... +..+.+.|+.+.+.+.....+....-...+.+. +.+.+.||......+.. +
T Consensus 101 ~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~~~~vy~t~e~~--~~~~~~Dg~~~~v~~d~~g 178 (352)
T TIGR02658 101 FLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPDCYHIFPTANDT--FFMHCRDGSLAKVGYGTKG 178 (352)
T ss_pred hhccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCCCcEEEEecCCc--cEEEeecCceEEEEecCCC
Confidence 26889999999987763 578999999998887766653221111121111 12223444433332221 1
Q ss_pred eee-eEEe-eec--CceeEE-EECC-CCCEEEEeeCCCcEEEEecC
Q 026765 182 RPL-DTVV-AHT--AGCYCI-AIDP-MGRYFAVGSADSLVSLWDIS 221 (233)
Q Consensus 182 ~~~-~~~~-~~~--~~v~~i-~~~p-~~~~las~s~dg~v~iwd~~ 221 (233)
+.. .... -+. ..+..- .+.+ +|+++....+ |+|.+-|+.
T Consensus 179 ~~~~~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~e-G~V~~id~~ 223 (352)
T TIGR02658 179 NPKIKPTEVFHPEDEYLINHPAYSNKSGRLVWPTYT-GKIFQIDLS 223 (352)
T ss_pred ceEEeeeeeecCCccccccCCceEcCCCcEEEEecC-CeEEEEecC
Confidence 110 1100 011 111000 3455 7887776666 999999953
No 302
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=98.58 E-value=2.8e-05 Score=62.67 Aligned_cols=194 Identities=15% Similarity=0.206 Sum_probs=122.2
Q ss_pred ccEEEEEECcCCC--EEEE-----EeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEe-------
Q 026765 21 KKVHSVAWNCTGT--KLAS-----GSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATAS------- 86 (233)
Q Consensus 21 ~~V~~~~~~~~~~--~l~s-----~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~------- 86 (233)
..|....|+|.++ .||. .+.++++++|.+.... .+....+.. ..-..+.|++.+..+++-.-
T Consensus 174 ~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s--~l~tk~lfk--~~~~qLkW~~~g~~ll~l~~t~~ksnK 249 (561)
T COG5354 174 VGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNS--VLVTKNLFK--VSGVQLKWQVLGKYLLVLVMTHTKSNK 249 (561)
T ss_pred cceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCC--eeeeeeeEe--ecccEEEEecCCceEEEEEEEeeeccc
Confidence 4567778888743 3443 4678899999886322 222222211 11124667766554433211
Q ss_pred ---CCCeEEEEECCCCeeeeeeeecCCeeEEEECCCCCeEEEEc--CCCcEEEEEcCCCeeeeeeecCceeeEEEECCCC
Q 026765 87 ---GDKTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGN--RDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTG 161 (233)
Q Consensus 87 ---~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (233)
....+.+++++...+.......+++...+|.|.++.+++.+ ....+.++|++.. +........-+.+.|+|.+
T Consensus 250 syfgesnLyl~~~~e~~i~V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N--l~~~~Pe~~rNT~~fsp~~ 327 (561)
T COG5354 250 SYFGESNLYLLRITERSIPVEKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN--LRFYFPEQKRNTIFFSPHE 327 (561)
T ss_pred ceeccceEEEEeecccccceeccccccceeeeecccCCceeEEecccccceeecccccc--eEEecCCcccccccccCcc
Confidence 12456777777554444435567788899999998877544 6778999998865 2222333456778899999
Q ss_pred CEEEEEeC---CCeEEEEecCCc-eeeeEEeeecCceeEEEECCCCCEEEEee------CCCcEEEEecCC
Q 026765 162 EMFFLTTG---NGTVEVLTYPSL-RPLDTVVAHTAGCYCIAIDPMGRYFAVGS------ADSLVSLWDISE 222 (233)
Q Consensus 162 ~~~~~~~~---~~~v~~~~~~~~-~~~~~~~~~~~~v~~i~~~p~~~~las~s------~dg~v~iwd~~~ 222 (233)
++++.++= .|.+.+|+.... ..+..+.+- ...-+.|+|+++++.+.. .|..|+|||+..
T Consensus 328 r~il~agF~nl~gni~i~~~~~rf~~~~~~~~~--n~s~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v~g 396 (561)
T COG5354 328 RYILFAGFDNLQGNIEIFDPAGRFKVAGAFNGL--NTSYCDWSPDGQFYDTDTTSEKLRVDNSIKLWDVYG 396 (561)
T ss_pred cEEEEecCCccccceEEeccCCceEEEEEeecC--CceEeeccCCceEEEecCCCcccccCcceEEEEecC
Confidence 99988653 588999987543 233244332 224468999999876654 478899999864
No 303
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.54 E-value=1.3e-05 Score=65.75 Aligned_cols=109 Identities=16% Similarity=0.251 Sum_probs=79.7
Q ss_pred EEEEEcCCCCCEEEEE----eCCCeE----EEEECCCCeee----eeeeecCCeeEEEECCCCCeEEEEcCCCcEEEEEc
Q 026765 70 DQLCWDPKHADLIATA----SGDKTV----RLWDARSGKCS----QQAELSGENINITYKPDGTHIAVGNRDDELTILDV 137 (233)
Q Consensus 70 ~~~~~~~~~~~~l~sg----~~d~~i----~iwd~~~~~~~----~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~ 137 (233)
.++.|+...++.+.+- +.+|.+ .+|+...++.. ........+.+++++|+...++.|+.||.+.+||.
T Consensus 209 l~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~ 288 (545)
T PF11768_consen 209 LDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSIPLPSQVICCARSPSEDKLVLGCEDGSIILYDT 288 (545)
T ss_pred EEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEEecCCcceEEecCcccceEEEEecCCeEEEEEc
Confidence 4566766555554432 344443 45776554322 23445667889999999999999999999999997
Q ss_pred CCCeeeeeeecCceeeEEEECCCCCEEEEEeCCCeEEEEecC
Q 026765 138 RKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYP 179 (233)
Q Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 179 (233)
.... ....+....++.++|||+|..+++++..|.+.+||..
T Consensus 289 ~~~~-t~~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~A 329 (545)
T PF11768_consen 289 TRGV-TLLAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMA 329 (545)
T ss_pred CCCe-eeeeeecccceEEEEcCCCcEEEEEcCCceEEEEEee
Confidence 6543 2233555678899999999999999999999999963
No 304
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.53 E-value=1.9e-05 Score=66.82 Aligned_cols=154 Identities=14% Similarity=0.165 Sum_probs=97.0
Q ss_pred eeeCccccEEEEEECc-------------CCCEEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCC----
Q 026765 15 EYTGHKKKVHSVAWNC-------------TGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPK---- 77 (233)
Q Consensus 15 ~~~~H~~~V~~~~~~~-------------~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~---- 77 (233)
.|..|.+.|+-..+.- +|++++|||.||+|.|-.+.+.. ...... -..++.+++++|+
T Consensus 53 ~~GtH~g~v~~~~~~~~~~~~~~~s~~~~~Gey~asCS~DGkv~I~sl~~~~--~~~~~d---f~rpiksial~Pd~~~~ 127 (846)
T KOG2066|consen 53 ALGTHRGAVYLTTCQGNPKTNFDHSSSILEGEYVASCSDDGKVVIGSLFTDD--EITQYD---FKRPIKSIALHPDFSRQ 127 (846)
T ss_pred eeccccceEEEEecCCcccccccccccccCCceEEEecCCCcEEEeeccCCc--cceeEe---cCCcceeEEeccchhhh
Confidence 3556888877766544 49999999999999998765422 122222 3468889999987
Q ss_pred CCCEEEEEeCCCeEEEEEC---CCCeeeeeeeecCCeeEEEECCCCCeEEEEcCCCcEEEEEcCCCeeeeeeecCc----
Q 026765 78 HADLIATASGDKTVRLWDA---RSGKCSQQAELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGY---- 150 (233)
Q Consensus 78 ~~~~l~sg~~d~~i~iwd~---~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~---- 150 (233)
..+.+++||..| +.++.- .....+......+.+.++.|. |+++|=+. |-.+++||+...+.+...+...
T Consensus 128 ~sk~fv~GG~ag-lvL~er~wlgnk~~v~l~~~eG~I~~i~W~--g~lIAWan-d~Gv~vyd~~~~~~l~~i~~p~~~~R 203 (846)
T KOG2066|consen 128 QSKQFVSGGMAG-LVLSERNWLGNKDSVVLSEGEGPIHSIKWR--GNLIAWAN-DDGVKVYDTPTRQRLTNIPPPSQSVR 203 (846)
T ss_pred hhhheeecCcce-EEEehhhhhcCccceeeecCccceEEEEec--CcEEEEec-CCCcEEEeccccceeeccCCCCCCCC
Confidence 345678999888 666642 122222223345677888885 45666555 4458999998877776655432
Q ss_pred ---eeeEEEECCCCCEEEEEeCCCeEEEEecC
Q 026765 151 ---EVNEIAWNMTGEMFFLTTGNGTVEVLTYP 179 (233)
Q Consensus 151 ---~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 179 (233)
-...+.|.++.+.++.-+ .+|++...+
T Consensus 204 ~e~fpphl~W~~~~~LVIGW~--d~v~i~~I~ 233 (846)
T KOG2066|consen 204 PELFPPHLHWQDEDRLVIGWG--DSVKICSIK 233 (846)
T ss_pred cccCCCceEecCCCeEEEecC--CeEEEEEEe
Confidence 134677766554443333 245555443
No 305
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.53 E-value=1e-06 Score=65.06 Aligned_cols=73 Identities=26% Similarity=0.451 Sum_probs=57.8
Q ss_pred CcEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeee-e-ecCCeeEEEECC-CCCeEEEEcCCCcEEEEEcCC
Q 026765 67 DSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQA-E-LSGENINITYKP-DGTHIAVGNRDDELTILDVRK 139 (233)
Q Consensus 67 ~~v~~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~-~-~~~~~~~~~~~~-~~~~l~~~~~d~~i~i~d~~~ 139 (233)
+.|.+++-+|..++++++|+.||.+-+||.+........ . .+.+...+-|+| ++..|+++++||.+.-||-.+
T Consensus 180 ~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 180 DAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST 255 (319)
T ss_pred ccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCC
Confidence 359999999999999999999999999999886432221 1 234456688988 568899999999999999653
No 306
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=98.52 E-value=1.8e-05 Score=63.79 Aligned_cols=140 Identities=16% Similarity=0.262 Sum_probs=95.6
Q ss_pred cCcCcEEEEEEcCCCCCEE-EEEeCCCeEEEEECCCCeeeeeeeecCCeeEEEECCCCCeEEEEcCC---CcEEEEEcCC
Q 026765 64 GHADSVDQLCWDPKHADLI-ATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRD---DELTILDVRK 139 (233)
Q Consensus 64 ~h~~~v~~~~~~~~~~~~l-~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d---~~i~i~d~~~ 139 (233)
.-.++|...+|.|.+..+. ++|-.+..+.++|++.. ............+.|+|.+++++.++-| |.+.+||...
T Consensus 272 ~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N--l~~~~Pe~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~ 349 (561)
T COG5354 272 DLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN--LRFYFPEQKRNTIFFSPHERYILFAGFDNLQGNIEIFDPAG 349 (561)
T ss_pred cccccceeeeecccCCceeEEecccccceeecccccc--eEEecCCcccccccccCcccEEEEecCCccccceEEeccCC
Confidence 4578999999999877654 45567888999999876 2323334445568899999999987766 6789999765
Q ss_pred CeeeeeeecCceeeEEEECCCCCEEEEEeC------CCeEEEEecCCceeeeEEeeecCceeEEEECCCCCEEEEeeCCC
Q 026765 140 FKPIHRRKFGYEVNEIAWNMTGEMFFLTTG------NGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADS 213 (233)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~v~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~las~s~dg 213 (233)
....-....+....-+.|+|+++++.+... |..+.+|+....... ..+-+.|.|.+++..+.|.+.
T Consensus 350 rf~~~~~~~~~n~s~~~wspd~qF~~~~~ts~k~~~Dn~i~l~~v~g~~~f--------el~~~~W~p~~~~~ttsSs~~ 421 (561)
T COG5354 350 RFKVAGAFNGLNTSYCDWSPDGQFYDTDTTSEKLRVDNSIKLWDVYGAKVF--------ELTNITWDPSGQYVTTSSSCP 421 (561)
T ss_pred ceEEEEEeecCCceEeeccCCceEEEecCCCcccccCcceEEEEecCchhh--------hhhhccccCCcccceeeccCC
Confidence 433322222334555789999999988754 677888886432211 334567777777766655544
No 307
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.50 E-value=1.7e-05 Score=65.03 Aligned_cols=114 Identities=15% Similarity=0.157 Sum_probs=79.4
Q ss_pred cCCeeEEEECC-CCCeEEEE----cCCCc----EEEEEcCCCe--e--eeeeecCceeeEEEECCCCCEEEEEeCCCeEE
Q 026765 108 SGENINITYKP-DGTHIAVG----NRDDE----LTILDVRKFK--P--IHRRKFGYEVNEIAWNMTGEMFFLTTGNGTVE 174 (233)
Q Consensus 108 ~~~~~~~~~~~-~~~~l~~~----~~d~~----i~i~d~~~~~--~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 174 (233)
...+.++.|+. ++..+.+. +.++. -.+|+....+ . +.....+..+.+++++|+.+.++.|+.||.+.
T Consensus 205 E~dPl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~klqrvsvtsipL~s~v~~ca~sp~E~kLvlGC~DgSii 284 (545)
T PF11768_consen 205 ENDPLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNKLQRVSVTSIPLPSQVICCARSPSEDKLVLGCEDGSII 284 (545)
T ss_pred cCCcEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCceeEEEEEEEecCCcceEEecCcccceEEEEecCCeEE
Confidence 33455666765 33334332 22332 3456654322 2 23344566788999999999999999999999
Q ss_pred EEecCCceeeeEEeeecCceeEEEECCCCCEEEEeeCCCcEEEEecCCc
Q 026765 175 VLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEM 223 (233)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~las~s~dg~v~iwd~~~~ 223 (233)
+||..... ..+....-.++.++|+|+|..+++|+.-|.+.+||+.-.
T Consensus 285 LyD~~~~~--t~~~ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~ALs 331 (545)
T PF11768_consen 285 LYDTTRGV--TLLAKAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMALS 331 (545)
T ss_pred EEEcCCCe--eeeeeecccceEEEEcCCCcEEEEEcCCceEEEEEeecC
Confidence 99986542 233344556789999999999999999999999999744
No 308
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=98.48 E-value=2.3e-05 Score=63.89 Aligned_cols=177 Identities=18% Similarity=0.314 Sum_probs=112.8
Q ss_pred EEEEEECcCCCEEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeC-----------CCeE
Q 026765 23 VHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASG-----------DKTV 91 (233)
Q Consensus 23 V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~-----------d~~i 91 (233)
-+-+.|||-|.+|+|==. .-|.+|-=.. ..++. ++ .|. .|..+.|+|.. ++|++=+. ...+
T Consensus 213 etyv~wSP~GTYL~t~Hk-~GI~lWGG~~--f~r~~--RF-~Hp-~Vq~idfSP~E-kYLVT~s~~p~~~~~~d~e~~~l 284 (698)
T KOG2314|consen 213 ETYVRWSPKGTYLVTFHK-QGIALWGGES--FDRIQ--RF-YHP-GVQFIDFSPNE-KYLVTYSPEPIIVEEDDNEGQQL 284 (698)
T ss_pred eeeEEecCCceEEEEEec-cceeeecCcc--HHHHH--hc-cCC-CceeeecCCcc-ceEEEecCCccccCcccCCCceE
Confidence 467899999999998654 4577884321 11111 12 353 47778999975 56666533 2578
Q ss_pred EEEECCCCeeeeeeeecCC---ee-EEEECCCCCeEEEEcCCCcEEEEEcCCCeeeeeeecC-ceeeEEEECCCCCEEEE
Q 026765 92 RLWDARSGKCSQQAELSGE---NI-NITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFG-YEVNEIAWNMTGEMFFL 166 (233)
Q Consensus 92 ~iwd~~~~~~~~~~~~~~~---~~-~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 166 (233)
+|||+++|...+.+..... .. -..|+.|++++|.-.. ..|.||+..+..++...... ..|....|+|.++.++.
T Consensus 285 ~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~-~sisIyEtpsf~lld~Kslki~gIr~FswsP~~~llAY 363 (698)
T KOG2314|consen 285 IIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTG-NSISIYETPSFMLLDKKSLKISGIRDFSWSPTSNLLAY 363 (698)
T ss_pred EEEEccccchhcceeccCCCccccceEEeccCCceeEEecc-ceEEEEecCceeeecccccCCccccCcccCCCcceEEE
Confidence 9999999988777665211 12 3689999999986665 46889987765554332221 35778899999998886
Q ss_pred EeCC-----CeEEEEecCCceeeeEEeeecCceeEEEECCCCCEEEE
Q 026765 167 TTGN-----GTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAV 208 (233)
Q Consensus 167 ~~~~-----~~v~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~las 208 (233)
-+.. ..+.+...++.+.+++-..|.-.=-.+-|..+|.+|+.
T Consensus 364 wtpe~~~~parvtL~evPs~~~iRt~nlfnVsDckLhWQk~gdyLcv 410 (698)
T KOG2314|consen 364 WTPETNNIPARVTLMEVPSKREIRTKNLFNVSDCKLHWQKSGDYLCV 410 (698)
T ss_pred EcccccCCcceEEEEecCccceeeeccceeeeccEEEeccCCcEEEE
Confidence 6542 34556666666666554433211113456677777764
No 309
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.48 E-value=1.4e-06 Score=64.45 Aligned_cols=74 Identities=19% Similarity=0.324 Sum_probs=60.4
Q ss_pred cEEEEEECcCC-CEEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCCeEEEEECCC
Q 026765 22 KVHSVAWNCTG-TKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARS 98 (233)
Q Consensus 22 ~V~~~~~~~~~-~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~iwd~~~ 98 (233)
.|++++-+|.. ..++.|+.||.+-+||..... .. .-.++.|+.++..+-|+|.++..|++++.||.+..||..+
T Consensus 181 ~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~--~p-~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~ 255 (319)
T KOG4714|consen 181 AVTALCSHPAQQHLVCCGTDDGIVGLWDARNVA--MP-VSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDAST 255 (319)
T ss_pred cchhhhCCcccccEEEEecCCCeEEEEEccccc--ch-HHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCC
Confidence 39999998865 566778889999999986431 11 1136789999999999999999999999999999999865
No 310
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.47 E-value=2e-05 Score=66.14 Aligned_cols=135 Identities=18% Similarity=0.144 Sum_probs=95.2
Q ss_pred CCCeEEEEECCCCeeeeeeeecCCeeEEEECCCCCeEEEEcC--------------------------------------
Q 026765 87 GDKTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNR-------------------------------------- 128 (233)
Q Consensus 87 ~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-------------------------------------- 128 (233)
..+.+.+.|..+.+...+....+....+.++|+|+++++.+.
T Consensus 213 y~~~vSvID~etmeV~~qV~Vdgnpd~v~~spdGk~afvTsyNsE~G~tl~em~a~e~d~~vvfni~~iea~vkdGK~~~ 292 (635)
T PRK02888 213 YRSLFTAVDAETMEVAWQVMVDGNLDNVDTDYDGKYAFSTCYNSEEGVTLAEMMAAERDWVVVFNIARIEEAVKAGKFKT 292 (635)
T ss_pred eeEEEEEEECccceEEEEEEeCCCcccceECCCCCEEEEeccCcccCcceeeeccccCceEEEEchHHHHHhhhCCCEEE
Confidence 345566667766555555555555556788888888876651
Q ss_pred --CCcEEEEEcCC-----CeeeeeeecCceeeEEEECCCCCEEEEEeC-CCeEEEEecCCcee------------eeEEe
Q 026765 129 --DDELTILDVRK-----FKPIHRRKFGYEVNEIAWNMTGEMFFLTTG-NGTVEVLTYPSLRP------------LDTVV 188 (233)
Q Consensus 129 --d~~i~i~d~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~------------~~~~~ 188 (233)
++.+.++|.++ ...+..+..+.....+.++|||+++++++. ++++.++|....+. ..+..
T Consensus 293 V~gn~V~VID~~t~~~~~~~v~~yIPVGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaeve 372 (635)
T PRK02888 293 IGGSKVPVVDGRKAANAGSALTRYVPVPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPE 372 (635)
T ss_pred ECCCEEEEEECCccccCCcceEEEEECCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeec
Confidence 23466777666 344445556667788999999999988765 89999999876442 22222
Q ss_pred eecCceeEEEECCCCCEEEEeeCCCcEEEEecCC
Q 026765 189 AHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISE 222 (233)
Q Consensus 189 ~~~~~v~~i~~~p~~~~las~s~dg~v~iwd~~~ 222 (233)
. +......+|+++|..+.|---|..|..||+..
T Consensus 373 v-GlGPLHTaFDg~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 373 L-GLGPLHTAFDGRGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred c-CCCcceEEECCCCCEEEeEeecceeEEEehHH
Confidence 2 33445789999999889999999999999986
No 311
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=98.44 E-value=0.00014 Score=59.02 Aligned_cols=187 Identities=17% Similarity=0.104 Sum_probs=105.2
Q ss_pred CCCEEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeeeeecCC
Q 026765 31 TGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGE 110 (233)
Q Consensus 31 ~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~ 110 (233)
.+..++.++.++.|..+|..+.. .+....+.+. ....... .+ ..++.++.++.+..+|..+++........+.
T Consensus 64 ~~~~v~v~~~~g~v~a~d~~tG~--~~W~~~~~~~--~~~~p~v--~~-~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~ 136 (377)
T TIGR03300 64 AGGKVYAADADGTVVALDAETGK--RLWRVDLDER--LSGGVGA--DG-GLVFVGTEKGEVIALDAEDGKELWRAKLSSE 136 (377)
T ss_pred ECCEEEEECCCCeEEEEEccCCc--EeeeecCCCC--cccceEE--cC-CEEEEEcCCCEEEEEECCCCcEeeeeccCce
Confidence 36788888889999888875432 2222222221 1112222 22 4566788899999999999887655444433
Q ss_pred eeE-EEECCCCCeEEEEcCCCcEEEEEcCCCeeeeeeecCceee------EEEECCCCCEEEEEeCCCeEEEEecCCcee
Q 026765 111 NIN-ITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVN------EIAWNMTGEMFFLTTGNGTVEVLTYPSLRP 183 (233)
Q Consensus 111 ~~~-~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 183 (233)
... ... .+..++.+..++.+..+|.++++.+...+...+.. .... .+..++.+..++.+..+|..+++.
T Consensus 137 ~~~~p~v--~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~--~~~~v~~~~~~g~v~ald~~tG~~ 212 (377)
T TIGR03300 137 VLSPPLV--ANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVI--ADGGVLVGFAGGKLVALDLQTGQP 212 (377)
T ss_pred eecCCEE--ECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEE--ECCEEEEECCCCEEEEEEccCCCE
Confidence 221 111 24567778889999999998887765544322111 0011 134667777888888888877655
Q ss_pred eeEEeee-cC------ceeEEEECC--CCCEEEEeeCCCcEEEEecCCcEEEEe
Q 026765 184 LDTVVAH-TA------GCYCIAIDP--MGRYFAVGSADSLVSLWDISEMLCVRT 228 (233)
Q Consensus 184 ~~~~~~~-~~------~v~~i~~~p--~~~~las~s~dg~v~iwd~~~~~~i~~ 228 (233)
+-..... .. ....+.-+| .+..+..++.+|.+..||+++++.+-+
T Consensus 213 ~W~~~~~~~~g~~~~~~~~~~~~~p~~~~~~vy~~~~~g~l~a~d~~tG~~~W~ 266 (377)
T TIGR03300 213 LWEQRVALPKGRTELERLVDVDGDPVVDGGQVYAVSYQGRVAALDLRSGRVLWK 266 (377)
T ss_pred eeeeccccCCCCCchhhhhccCCccEEECCEEEEEEcCCEEEEEECCCCcEEEe
Confidence 4322110 00 000000011 234555566667777777766655443
No 312
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.41 E-value=2.8e-05 Score=58.62 Aligned_cols=142 Identities=19% Similarity=0.198 Sum_probs=95.1
Q ss_pred CCeEEEEECCCCeeeeeeeecCCee-EE-EECCCCCeEEEEcCCCcEEEEEcCCCeeeeeeecCceeeEEEECCCCCEEE
Q 026765 88 DKTVRLWDARSGKCSQQAELSGENI-NI-TYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFF 165 (233)
Q Consensus 88 d~~i~iwd~~~~~~~~~~~~~~~~~-~~-~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (233)
+++|..||.++++............ .+ ...+++.+++++..++.+..||..+++.+.......++...- ...+..++
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~-~~~~~~v~ 80 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDLGPGIGGPVATAVPDGGRVYVASGDGNLYALDAKTGKVLWRFDLPGPISGAP-VVDGGRVY 80 (238)
T ss_dssp TSEEEEEETTTTEEEEEEECSSSCSSEEETEEEETTEEEEEETTSEEEEEETTTSEEEEEEECSSCGGSGE-EEETTEEE
T ss_pred CCEEEEEECCCCCEEEEEECCCCCCCccceEEEeCCEEEEEcCCCEEEEEECCCCCEEEEeecccccccee-eecccccc
Confidence 6889999999998776665422111 12 123356677778899999999998888876665433221111 22456677
Q ss_pred EEeCCCeEEEEecCCceeeeEE-eeecC---ceeEEEECCCCCEEEEeeCCCcEEEEecCCcEEEEeee
Q 026765 166 LTTGNGTVEVLTYPSLRPLDTV-VAHTA---GCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFT 230 (233)
Q Consensus 166 ~~~~~~~v~~~~~~~~~~~~~~-~~~~~---~v~~i~~~p~~~~las~s~dg~v~iwd~~~~~~i~~~~ 230 (233)
+++.++.+..+|..+++.+-.. ..... ..........+..++.+..++.|..+|+++|+.+-.++
T Consensus 81 v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~d~~tG~~~w~~~ 149 (238)
T PF13360_consen 81 VGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPAVDGDRLYVGTSSGKLVALDPKTGKLLWKYP 149 (238)
T ss_dssp EEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEEEETTEEEEEETCSEEEEEETTTTEEEEEEE
T ss_pred cccceeeeEecccCCcceeeeeccccccccccccccCceEecCEEEEEeccCcEEEEecCCCcEEEEee
Confidence 7778889999999898887763 32211 11122233337788888889999999999999877664
No 313
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.40 E-value=0.00047 Score=53.27 Aligned_cols=201 Identities=20% Similarity=0.192 Sum_probs=112.5
Q ss_pred EEEEEECc-CCCEEEEEeCCCCE-EEEecccCCCCce----eeEEEecCcCcEEEEEEcCCCCCEEEE----EeCCCeEE
Q 026765 23 VHSVAWNC-TGTKLASGSVDQTA-RVWHIEPHGHGKV----KDIELRGHADSVDQLCWDPKHADLIAT----ASGDKTVR 92 (233)
Q Consensus 23 V~~~~~~~-~~~~l~s~~~D~~v-~vW~~~~~~~~~~----~~~~~~~h~~~v~~~~~~~~~~~~l~s----g~~d~~i~ 92 (233)
...++.+| ....++-+-.-|+- .+||......... ....|.|| -.|++++..++++ ....|.|-
T Consensus 7 gH~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGH------g~fs~dG~~LytTEnd~~~g~G~Ig 80 (305)
T PF07433_consen 7 GHGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGH------GVFSPDGRLLYTTENDYETGRGVIG 80 (305)
T ss_pred ccceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecC------EEEcCCCCEEEEeccccCCCcEEEE
Confidence 34566666 34445555555543 4566543211000 00124455 3688887544433 24468999
Q ss_pred EEECC-CCeeeeeeeecC-CeeEEEECCCCCeEEEEcC------------------CCcEEEEEcCCCeeeeeeec----
Q 026765 93 LWDAR-SGKCSQQAELSG-ENINITYKPDGTHIAVGNR------------------DDELTILDVRKFKPIHRRKF---- 148 (233)
Q Consensus 93 iwd~~-~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~------------------d~~i~i~d~~~~~~~~~~~~---- 148 (233)
|||.. .-+.+.++...+ .+-.+.+.||++.|+++.. +..+...|.++++.+.+...
T Consensus 81 Vyd~~~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~ 160 (305)
T PF07433_consen 81 VYDAARGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDL 160 (305)
T ss_pred EEECcCCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCccc
Confidence 99998 333334443322 1234778999977766532 22455566666666655333
Q ss_pred -CceeeEEEECCCCCEEEEEeCCCeE-----EEEecCCceeeeEEe-------eecCceeEEEECCCCCEEEEee-CCCc
Q 026765 149 -GYEVNEIAWNMTGEMFFLTTGNGTV-----EVLTYPSLRPLDTVV-------AHTAGCYCIAIDPMGRYFAVGS-ADSL 214 (233)
Q Consensus 149 -~~~~~~~~~~~~~~~~~~~~~~~~v-----~~~~~~~~~~~~~~~-------~~~~~v~~i~~~p~~~~las~s-~dg~ 214 (233)
...+..+++..+|..++..-..|.- .+...+..+.+..+. ....-+-+|++++++.++++.| ..+.
T Consensus 161 ~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~g~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~ 240 (305)
T PF07433_consen 161 HQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRRGGALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGR 240 (305)
T ss_pred cccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcCCCcceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCE
Confidence 2357888888887665544332211 111111222222111 1234577999999998876555 6788
Q ss_pred EEEEecCCcEEEEee
Q 026765 215 VSLWDISEMLCVRTF 229 (233)
Q Consensus 215 v~iwd~~~~~~i~~~ 229 (233)
+.+||..+++.+...
T Consensus 241 ~~~~d~~tg~~~~~~ 255 (305)
T PF07433_consen 241 VAVWDAATGRLLGSV 255 (305)
T ss_pred EEEEECCCCCEeecc
Confidence 999999999887654
No 314
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=98.38 E-value=6e-06 Score=62.70 Aligned_cols=161 Identities=17% Similarity=0.317 Sum_probs=107.4
Q ss_pred eee-eCccccEEEEEECcCCCEEEEEeCCCCEEEEecccCCCCceeeEEEecCc-----CcEEEEEEcCCCCCEEEEEeC
Q 026765 14 REY-TGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHA-----DSVDQLCWDPKHADLIATASG 87 (233)
Q Consensus 14 ~~~-~~H~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~-----~~v~~~~~~~~~~~~l~sg~~ 87 (233)
+.| ..|.--|+++.|+.|...++|+. |=.|-+|+++--. +....+.++.|. ..|++..|+|....++.-.+.
T Consensus 165 rvyaNaH~yhiNSiS~NsD~et~lSaD-dLrINLWnl~i~D-~sFnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsS 242 (460)
T COG5170 165 RVYANAHPYHINSISFNSDKETLLSAD-DLRINLWNLEIID-GSFNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSS 242 (460)
T ss_pred eeccccceeEeeeeeecCchheeeecc-ceeeeeccccccC-CceEEEeccCccHHHHHHHHhhcccCHhHcceEEEecC
Confidence 345 57999999999999999998876 7889999886422 223334455553 468899999988777777788
Q ss_pred CCeEEEEECCCCee------eeeeeec-----------CCeeEEEECCCCCeEEEEcCCCcEEEEEcCCCe-eeeeeecC
Q 026765 88 DKTVRLWDARSGKC------SQQAELS-----------GENINITYKPDGTHIAVGNRDDELTILDVRKFK-PIHRRKFG 149 (233)
Q Consensus 88 d~~i~iwd~~~~~~------~~~~~~~-----------~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~-~~~~~~~~ 149 (233)
.|.|++-|++.... ....... ..+..+.|+++|+++++-.. -++++||.+..+ ++......
T Consensus 243 kG~Ikl~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~k~pikTi~~h 321 (460)
T COG5170 243 KGEIKLNDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMAKNPIKTIPMH 321 (460)
T ss_pred CCcEEehhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEecccccCCceeechH
Confidence 99999999985421 0111111 12335889999999875443 479999987643 33333221
Q ss_pred ----------------ceeeEEEECCCCCEEEEEeCCCeEEEEe
Q 026765 150 ----------------YEVNEIAWNMTGEMFFLTTGNGTVEVLT 177 (233)
Q Consensus 150 ----------------~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 177 (233)
..-..+.|+.+.+.+++|+-++..-++-
T Consensus 322 ~~l~~~l~d~YEnDaifdkFeisfSgd~~~v~sgsy~NNfgiyp 365 (460)
T COG5170 322 CDLMDELNDVYENDAIFDKFEISFSGDDKHVLSGSYSNNFGIYP 365 (460)
T ss_pred HHHHHHHHhhhhccceeeeEEEEecCCcccccccccccceeeec
Confidence 1234567777777777777666555554
No 315
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=98.38 E-value=0.00073 Score=54.87 Aligned_cols=202 Identities=20% Similarity=0.224 Sum_probs=138.3
Q ss_pred EEEEECcCCCE-EEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEe--CCCeEEEEECCCCe
Q 026765 24 HSVAWNCTGTK-LASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATAS--GDKTVRLWDARSGK 100 (233)
Q Consensus 24 ~~~~~~~~~~~-l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~--~d~~i~iwd~~~~~ 100 (233)
..++.++.++. .++...+..|.+.|..... .......+. .-..++++|++..+.++-. .++++.+.|-.+.+
T Consensus 77 ~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~---~~~~~~vG~--~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~ 151 (381)
T COG3391 77 AGVAVNPAGNKVYVTTGDSNTVSVIDTATNT---VLGSIPVGL--GPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNK 151 (381)
T ss_pred cceeeCCCCCeEEEecCCCCeEEEEcCcccc---eeeEeeecc--CCceEEECCCCCEEEEEecccCCceEEEEeCCCCe
Confidence 35677788874 4555567899998854321 111112222 5567889998876666666 47899999988888
Q ss_pred eeeeeeecCCeeEEEECCCCCeEEEEc-CCCcEEEEEcCCCeeee-----eeecCceeeEEEECCCCCEEEEEeCC---C
Q 026765 101 CSQQAELSGENINITYKPDGTHIAVGN-RDDELTILDVRKFKPIH-----RRKFGYEVNEIAWNMTGEMFFLTTGN---G 171 (233)
Q Consensus 101 ~~~~~~~~~~~~~~~~~~~~~~l~~~~-~d~~i~i~d~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~---~ 171 (233)
.............++++|+|..+.+.. .++.+.+.|........ ..........+.++++++.+.+.... +
T Consensus 152 ~~~~~~vG~~P~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~ 231 (381)
T COG3391 152 VTATIPVGNTPTGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSN 231 (381)
T ss_pred EEEEEecCCCcceEEECCCCCeEEEEecCCCeEEEEeCCCcceeccccccccccCCCCceEEECCCCCEEEEEeccCCCc
Confidence 777744444457899999999776655 67889999976554442 12233445678899999987776554 5
Q ss_pred eEEEEecCCceeeeE-Ee-eecCceeEEEECCCCCEEEEee-CCCcEEEEecCCcEEEEeeec
Q 026765 172 TVEVLTYPSLRPLDT-VV-AHTAGCYCIAIDPMGRYFAVGS-ADSLVSLWDISEMLCVRTFTK 231 (233)
Q Consensus 172 ~v~~~~~~~~~~~~~-~~-~~~~~v~~i~~~p~~~~las~s-~dg~v~iwd~~~~~~i~~~~~ 231 (233)
.+...|..+...... .. +.. ....+..+|+|.++.... ..+.+.+-|......+.++..
T Consensus 232 ~v~~id~~~~~v~~~~~~~~~~-~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~v~~~~~~ 293 (381)
T COG3391 232 NVLKIDTATGNVTATDLPVGSG-APRGVAVDPAGKAAYVANSQGGTVSVIDGATDRVVKTGPT 293 (381)
T ss_pred eEEEEeCCCceEEEeccccccC-CCCceeECCCCCEEEEEecCCCeEEEEeCCCCceeeeecc
Confidence 888888877665544 11 222 456789999999887774 458899999988777766543
No 316
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=98.34 E-value=1.4e-06 Score=45.00 Aligned_cols=37 Identities=38% Similarity=0.539 Sum_probs=33.4
Q ss_pred cceeeeCccccEEEEEECcCCCEEEEEeCCCCEEEEe
Q 026765 12 HSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWH 48 (233)
Q Consensus 12 ~~~~~~~H~~~V~~~~~~~~~~~l~s~~~D~~v~vW~ 48 (233)
....+..|...|+++.|++.+..+++++.|+.+++|+
T Consensus 4 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 4 LLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 3456778999999999999999999999999999995
No 317
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.33 E-value=1.8e-05 Score=67.96 Aligned_cols=146 Identities=15% Similarity=0.238 Sum_probs=105.1
Q ss_pred EEEEEECcCCCEEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeC---------CCeEEE
Q 026765 23 VHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASG---------DKTVRL 93 (233)
Q Consensus 23 V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~---------d~~i~i 93 (233)
|+-+. ..++.+.+|...|+|.+-|.+... ..-++.+|++.+.++... +++|+++|. |..|+|
T Consensus 180 v~imR--~Nnr~lf~G~t~G~V~LrD~~s~~----~iht~~aHs~siSDfDv~---GNlLitCG~S~R~~~l~~D~FvkV 250 (1118)
T KOG1275|consen 180 VTIMR--YNNRNLFCGDTRGTVFLRDPNSFE----TIHTFDAHSGSISDFDVQ---GNLLITCGYSMRRYNLAMDPFVKV 250 (1118)
T ss_pred eEEEE--ecCcEEEeecccceEEeecCCcCc----eeeeeeccccceeeeecc---CCeEEEeecccccccccccchhhh
Confidence 44444 346889999999999998876432 223678999999987764 357777765 567899
Q ss_pred EECCCCeeeeeeeecCCeeEEEECCC-CCeEEEEcCCCcEEEEEcCCC-eee----eeeecCceeeEEEECCCCCEEEEE
Q 026765 94 WDARSGKCSQQAELSGENINITYKPD-GTHIAVGNRDDELTILDVRKF-KPI----HRRKFGYEVNEIAWNMTGEMFFLT 167 (233)
Q Consensus 94 wd~~~~~~~~~~~~~~~~~~~~~~~~-~~~l~~~~~d~~i~i~d~~~~-~~~----~~~~~~~~~~~~~~~~~~~~~~~~ 167 (233)
||+|.-+......++....-+.|.|. ...+++++..|...+-|..+. ++. +....+..+..++++++++.++.+
T Consensus 251 YDLRmmral~PI~~~~~P~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafg 330 (1118)
T KOG1275|consen 251 YDLRMMRALSPIQFPYGPQFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFG 330 (1118)
T ss_pred hhhhhhhccCCcccccCchhhhhcccccceEEEEecccceeeccccccCCCccceeEEccCCCcceeEEecCCCceEEEe
Confidence 99998766555555544445777776 356888899999999884321 111 111223447889999999999999
Q ss_pred eCCCeEEEEe
Q 026765 168 TGNGTVEVLT 177 (233)
Q Consensus 168 ~~~~~v~~~~ 177 (233)
..+|.+.+|.
T Consensus 331 d~~g~v~~wa 340 (1118)
T KOG1275|consen 331 DHEGHVNLWA 340 (1118)
T ss_pred cccCcEeeec
Confidence 9999999997
No 318
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.31 E-value=0.00012 Score=64.89 Aligned_cols=193 Identities=15% Similarity=0.220 Sum_probs=121.3
Q ss_pred ccEEEEEECcCCCEEEEEeCCCCEEEEecccCCCCceeeEEEec-CcCcEEEEEEcCCCCCEEEEEeCCCeEEEEE----
Q 026765 21 KKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRG-HADSVDQLCWDPKHADLIATASGDKTVRLWD---- 95 (233)
Q Consensus 21 ~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~-h~~~v~~~~~~~~~~~~l~sg~~d~~i~iwd---- 95 (233)
+.|.++.|-.+...++.+..+|.|.+-|.+.. .+++-| ....|.+++|+|+. .+++-...++++.+-+
T Consensus 69 ~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~------~~eivg~vd~GI~aaswS~De-e~l~liT~~~tll~mT~~f~ 141 (1265)
T KOG1920|consen 69 DEIVSVQFLADTNSICVITALGDIILVDPETL------ELEIVGNVDNGISAASWSPDE-ELLALITGRQTLLFMTKDFE 141 (1265)
T ss_pred cceEEEEEecccceEEEEecCCcEEEEccccc------ceeeeeeccCceEEEeecCCC-cEEEEEeCCcEEEEEecccc
Confidence 57999999999999999999999998776532 122323 45789999999985 5666666666665422
Q ss_pred CCCC-------------------eeeeeee----------------------ecCCeeEEEECCCCCeEEEEc----CC-
Q 026765 96 ARSG-------------------KCSQQAE----------------------LSGENINITYKPDGTHIAVGN----RD- 129 (233)
Q Consensus 96 ~~~~-------------------~~~~~~~----------------------~~~~~~~~~~~~~~~~l~~~~----~d- 129 (233)
.-.. +....+. .+.....+.|.-||.++++.. .+
T Consensus 142 ~i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~ 221 (1265)
T KOG1920|consen 142 PIAEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGT 221 (1265)
T ss_pred chhccccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCc
Confidence 1100 0000011 111234588999999998732 23
Q ss_pred CcEEEEEcCCCeeee-eeecCceeeEEEECCCCCEEEEEeC---CCeEEEEecCCceeee----EEeeecCceeEEEECC
Q 026765 130 DELTILDVRKFKPIH-RRKFGYEVNEIAWNMTGEMFFLTTG---NGTVEVLTYPSLRPLD----TVVAHTAGCYCIAIDP 201 (233)
Q Consensus 130 ~~i~i~d~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~---~~~v~~~~~~~~~~~~----~~~~~~~~v~~i~~~p 201 (233)
.++++||-+ +..-. ..+....-.+++|-|.|..+++... ++.|.++-- ++..-. .+......|..++|+-
T Consensus 222 RkirV~drE-g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffEr-NGL~hg~f~l~~p~de~~ve~L~Wns 299 (1265)
T KOG1920|consen 222 RKIRVYDRE-GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFER-NGLRHGEFVLPFPLDEKEVEELAWNS 299 (1265)
T ss_pred eeEEEeccc-chhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEec-CCccccccccCCcccccchheeeecC
Confidence 789999965 21111 1122234567899999998887643 455666542 222211 1222334488999999
Q ss_pred CCCEEEE---eeCCCcEEEEecCC
Q 026765 202 MGRYFAV---GSADSLVSLWDISE 222 (233)
Q Consensus 202 ~~~~las---~s~dg~v~iwd~~~ 222 (233)
++..||. ......|++|-...
T Consensus 300 ~sdiLAv~~~~~e~~~v~lwt~~N 323 (1265)
T KOG1920|consen 300 NSDILAVVTSNLENSLVQLWTTGN 323 (1265)
T ss_pred CCCceeeeecccccceEEEEEecC
Confidence 9999998 55566699997653
No 319
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.29 E-value=9.2e-05 Score=62.27 Aligned_cols=123 Identities=13% Similarity=0.185 Sum_probs=85.9
Q ss_pred CCeEEEEECCC-----CeeeeeeeecCCeeEEEECCCCCeEEEEc-CCCcEEEEEcCCCee------------eeeeecC
Q 026765 88 DKTVRLWDARS-----GKCSQQAELSGENINITYKPDGTHIAVGN-RDDELTILDVRKFKP------------IHRRKFG 149 (233)
Q Consensus 88 d~~i~iwd~~~-----~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~d~~i~i~d~~~~~~------------~~~~~~~ 149 (233)
++.|.+.|.++ .+..........+..+.++|||+++++++ .+..+.++|+.+.+. +.+.+.+
T Consensus 295 gn~V~VID~~t~~~~~~~v~~yIPVGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevevG 374 (635)
T PRK02888 295 GSKVPVVDGRKAANAGSALTRYVPVPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPELG 374 (635)
T ss_pred CCEEEEEECCccccCCcceEEEEECCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeeccC
Confidence 57899999987 35556666677777899999999987665 478999999987553 3344455
Q ss_pred ceeeEEEECCCCCEEEEEeCCCeEEEEecCC----------ceeeeEEeeecCce-----eEEEECCCCCEEEEee
Q 026765 150 YEVNEIAWNMTGEMFFLTTGNGTVEVLTYPS----------LRPLDTVVAHTAGC-----YCIAIDPMGRYFAVGS 210 (233)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~----------~~~~~~~~~~~~~v-----~~i~~~p~~~~las~s 210 (233)
.......|..+|+.+.+-.-|..+..|++.. ...+..+..|-.+. ..=.-.|+|++|++..
T Consensus 375 lGPLHTaFDg~G~aytslf~dsqv~kwn~~~a~~~~~g~~~~~v~~k~dV~y~pgh~~~~~g~t~~~dgk~l~~~n 450 (635)
T PRK02888 375 LGPLHTAFDGRGNAYTTLFLDSQIVKWNIEAAIRAYKGEKVDPIVQKLDVHYQPGHNHASMGETKEADGKWLVSLN 450 (635)
T ss_pred CCcceEEECCCCCEEEeEeecceeEEEehHHHHHHhccccCCcceecccCCCccceeeecCCCcCCCCCCEEEEcc
Confidence 5667889999998888888899999999764 22333333332221 1122467888887754
No 320
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=98.27 E-value=4.4e-06 Score=42.97 Aligned_cols=38 Identities=37% Similarity=0.664 Sum_probs=33.5
Q ss_pred eeeeEEeeecCceeEEEECCCCCEEEEeeCCCcEEEEe
Q 026765 182 RPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWD 219 (233)
Q Consensus 182 ~~~~~~~~~~~~v~~i~~~p~~~~las~s~dg~v~iwd 219 (233)
+++..+..|...|.++.|+|.+.++++++.|+.+++||
T Consensus 3 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 3 ELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 44556677888999999999999999999999999996
No 321
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=98.23 E-value=0.00016 Score=59.14 Aligned_cols=156 Identities=17% Similarity=0.255 Sum_probs=96.8
Q ss_pred CcEEEEEEcCCCCCEEEEEeCC---CeEEEEECCCCeeeeeeeecCCeeEEEECCCCCeEEE-EcCCCc--EEEEEcCCC
Q 026765 67 DSVDQLCWDPKHADLIATASGD---KTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAV-GNRDDE--LTILDVRKF 140 (233)
Q Consensus 67 ~~v~~~~~~~~~~~~l~sg~~d---~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~d~~--i~i~d~~~~ 140 (233)
..+..-+|+|++..+....-.. ..+.++|+.+++........+....-+|+|||++++- ...|+. |.++|+...
T Consensus 193 ~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~~~g~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~ 272 (425)
T COG0823 193 SLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILNFNGNNGAPAFSPDGSKLAFSSSRDGSPDIYLMDLDGK 272 (425)
T ss_pred cceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeeccCCccCCccCCCCCCEEEEEECCCCCccEEEEcCCCC
Confidence 4555667888877654432222 4588999999887777666677777899999998874 445565 556677655
Q ss_pred eeeeeeecCc-eeeEEEECCCCCEEEEEe-CCCeEEEE--ecCCceeeeEEeeecCceeEEEECCCCCEEEEeeCC-Cc-
Q 026765 141 KPIHRRKFGY-EVNEIAWNMTGEMFFLTT-GNGTVEVL--TYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSAD-SL- 214 (233)
Q Consensus 141 ~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-~~~~v~~~--~~~~~~~~~~~~~~~~~v~~i~~~p~~~~las~s~d-g~- 214 (233)
+.. ...... .-..=.|+|+|+.++-.+ ..|.-.+| +.+.... ..+......-..-.|+|+|++|+..+.. |.
T Consensus 273 ~~~-~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~-~riT~~~~~~~~p~~SpdG~~i~~~~~~~g~~ 350 (425)
T COG0823 273 NLP-RLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQV-TRLTFSGGGNSNPVWSPDGDKIVFESSSGGQW 350 (425)
T ss_pred cce-ecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCce-eEeeccCCCCcCccCCCCCCEEEEEeccCCce
Confidence 422 222211 222457899999988664 44544444 4443333 3333333222356799999998877743 44
Q ss_pred -EEEEecCCcE
Q 026765 215 -VSLWDISEML 224 (233)
Q Consensus 215 -v~iwd~~~~~ 224 (233)
|.+.|+.++.
T Consensus 351 ~i~~~~~~~~~ 361 (425)
T COG0823 351 DIDKNDLASGG 361 (425)
T ss_pred eeEEeccCCCC
Confidence 6677665554
No 322
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=98.19 E-value=0.00018 Score=58.95 Aligned_cols=186 Identities=17% Similarity=0.251 Sum_probs=103.9
Q ss_pred eeCccccEEEEEECcCCCEEEEEe--CC--CCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCCeE
Q 026765 16 YTGHKKKVHSVAWNCTGTKLASGS--VD--QTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTV 91 (233)
Q Consensus 16 ~~~H~~~V~~~~~~~~~~~l~s~~--~D--~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i 91 (233)
+..-...+..-+|+|++..++--+ .. ..+.+++++......+ ..+.++. ..-.|+|++.+++++...|+..
T Consensus 188 l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i--~~~~g~~---~~P~fspDG~~l~f~~~rdg~~ 262 (425)
T COG0823 188 LTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVI--LNFNGNN---GAPAFSPDGSKLAFSSSRDGSP 262 (425)
T ss_pred ecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCcccee--eccCCcc---CCccCCCCCCEEEEEECCCCCc
Confidence 333355566778999988765543 22 2477777765443322 2344443 3458999999999999999876
Q ss_pred EEE--ECCCCeeeeeeeecCCeeEEEECCCCCeEEEEc-CCCc--EEEEEcCCCeeeeeeecCceeeEEEECCCCCEEEE
Q 026765 92 RLW--DARSGKCSQQAELSGENINITYKPDGTHIAVGN-RDDE--LTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFL 166 (233)
Q Consensus 92 ~iw--d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-~d~~--i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 166 (233)
.|| |+..+...+.....+....-.|+|||++++-.+ ..|. |.++++..............-..-.|+|+|++++.
T Consensus 263 ~iy~~dl~~~~~~~Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~~riT~~~~~~~~p~~SpdG~~i~~ 342 (425)
T COG0823 263 DIYLMDLDGKNLPRLTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQVTRLTFSGGGNSNPVWSPDGDKIVF 342 (425)
T ss_pred cEEEEcCCCCcceecccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCceeEeeccCCCCcCccCCCCCCEEEE
Confidence 655 676665433222233334567899999987444 4454 55556555443221111112225678999999987
Q ss_pred EeCC-Ce--EEEEecCCceeeeEEeeecCceeEEEECCCCCEEE
Q 026765 167 TTGN-GT--VEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFA 207 (233)
Q Consensus 167 ~~~~-~~--v~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~la 207 (233)
.+.. |. +.+.+..+......+. +......-++.|+++.+.
T Consensus 343 ~~~~~g~~~i~~~~~~~~~~~~~lt-~~~~~e~ps~~~ng~~i~ 385 (425)
T COG0823 343 ESSSGGQWDIDKNDLASGGKIRILT-STYLNESPSWAPNGRMIM 385 (425)
T ss_pred EeccCCceeeEEeccCCCCcEEEcc-ccccCCCCCcCCCCceEE
Confidence 7643 44 4444443333222221 222222344566665544
No 323
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=98.13 E-value=5.9e-05 Score=61.57 Aligned_cols=156 Identities=19% Similarity=0.247 Sum_probs=101.6
Q ss_pred EEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeeeeecCCeeEEEECCCCCeEEEEcC-----------CCcEEEEEc
Q 026765 69 VDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNR-----------DDELTILDV 137 (233)
Q Consensus 69 v~~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-----------d~~i~i~d~ 137 (233)
-+-+.|+|.|. +|+|--.. -|.+|--.+-...+.+.+ ..+.-+.|+|..+||++-+. ...+.|||+
T Consensus 213 etyv~wSP~GT-YL~t~Hk~-GI~lWGG~~f~r~~RF~H-p~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI 289 (698)
T KOG2314|consen 213 ETYVRWSPKGT-YLVTFHKQ-GIALWGGESFDRIQRFYH-PGVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDI 289 (698)
T ss_pred eeeEEecCCce-EEEEEecc-ceeeecCccHHHHHhccC-CCceeeecCCccceEEEecCCccccCcccCCCceEEEEEc
Confidence 35678999864 66665544 478886544443444432 33456889999999987653 246999999
Q ss_pred CCCeeeeeeec---C-ceeeEEEECCCCCEEEEEeCCCeEEEEecCCceeeeEEeeecCceeEEEECCCCCEEEEeeCC-
Q 026765 138 RKFKPIHRRKF---G-YEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSAD- 212 (233)
Q Consensus 138 ~~~~~~~~~~~---~-~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~las~s~d- 212 (233)
+++........ . ....-..|+.|+++++....+ .+.||..+...++..-...-.+|....|+|.++.||--...
T Consensus 290 ~tG~lkrsF~~~~~~~~~WP~frWS~DdKy~Arm~~~-sisIyEtpsf~lld~Kslki~gIr~FswsP~~~llAYwtpe~ 368 (698)
T KOG2314|consen 290 ATGLLKRSFPVIKSPYLKWPIFRWSHDDKYFARMTGN-SISIYETPSFMLLDKKSLKISGIRDFSWSPTSNLLAYWTPET 368 (698)
T ss_pred cccchhcceeccCCCccccceEEeccCCceeEEeccc-eEEEEecCceeeecccccCCccccCcccCCCcceEEEEcccc
Confidence 98765544332 1 234567899999999988874 68899877655543333345667888899998888754432
Q ss_pred ----CcEEEEecCCcEEEEe
Q 026765 213 ----SLVSLWDISEMLCVRT 228 (233)
Q Consensus 213 ----g~v~iwd~~~~~~i~~ 228 (233)
..+.+-.+.++..|++
T Consensus 369 ~~~parvtL~evPs~~~iRt 388 (698)
T KOG2314|consen 369 NNIPARVTLMEVPSKREIRT 388 (698)
T ss_pred cCCcceEEEEecCccceeee
Confidence 2345555555544443
No 324
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=98.12 E-value=0.0031 Score=51.33 Aligned_cols=207 Identities=11% Similarity=0.141 Sum_probs=116.7
Q ss_pred cEEEEEECcCCCEEEEEeCCCCEEEEecccCCCC-----------------------cee----------------eEEE
Q 026765 22 KVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHG-----------------------KVK----------------DIEL 62 (233)
Q Consensus 22 ~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~-----------------------~~~----------------~~~~ 62 (233)
.|+.+.|.++...|+.|-..|.|.||........ .+. ..-+
T Consensus 3 ~v~~vs~a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l~ 82 (395)
T PF08596_consen 3 SVTHVSFAPETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTLL 82 (395)
T ss_dssp -EEEEEEETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEEE
T ss_pred eEEEEEecCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhhe
Confidence 5889999999999999999999999865321100 000 0112
Q ss_pred ecCcCcEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeeeeecC---------CeeEEEEC-----CCC---CeEEE
Q 026765 63 RGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSG---------ENINITYK-----PDG---THIAV 125 (233)
Q Consensus 63 ~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~---------~~~~~~~~-----~~~---~~l~~ 125 (233)
....++|++++.+.- .+++.|..+|.+.|.|+|....+....... .+.++.|. .|+ -.+++
T Consensus 83 ~~~~g~vtal~~S~i--GFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~v 160 (395)
T PF08596_consen 83 DAKQGPVTALKNSDI--GFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLLV 160 (395)
T ss_dssp ---S-SEEEEEE-BT--SEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEEE
T ss_pred eccCCcEeEEecCCC--cEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEEE
Confidence 345678999998643 588999999999999999887665433322 22334442 333 36788
Q ss_pred EcCCCcEEEEEcCC-Cee------eeee-ecCceeeEEE-ECCC--------------------CCEEEEEeCCCeEEEE
Q 026765 126 GNRDDELTILDVRK-FKP------IHRR-KFGYEVNEIA-WNMT--------------------GEMFFLTTGNGTVEVL 176 (233)
Q Consensus 126 ~~~d~~i~i~d~~~-~~~------~~~~-~~~~~~~~~~-~~~~--------------------~~~~~~~~~~~~v~~~ 176 (233)
|...|.+.+|.+.. ... .... ....++..+. ++.+ -+.+++.+.+..++++
T Consensus 161 GTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~irv~ 240 (395)
T PF08596_consen 161 GTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESDIRVF 240 (395)
T ss_dssp EETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSEEEEE
T ss_pred EeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccceEEE
Confidence 99999999998641 110 1111 1111111111 2111 1235666777889999
Q ss_pred ecCCceeeeEEeeecCceeEEEE-----CCCCCEEEEeeCCCcEEEEecCCcEEEEeee
Q 026765 177 TYPSLRPLDTVVAHTAGCYCIAI-----DPMGRYFAVGSADSLVSLWDISEMLCVRTFT 230 (233)
Q Consensus 177 ~~~~~~~~~~~~~~~~~v~~i~~-----~p~~~~las~s~dg~v~iwd~~~~~~i~~~~ 230 (233)
...+.+...+..........+.+ ...+..|++-..+|.|++|.+-..+.+..++
T Consensus 241 ~~~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~ 299 (395)
T PF08596_consen 241 KPPKSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVS 299 (395)
T ss_dssp -TT---EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE
T ss_pred eCCCCcccceeeccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhccc
Confidence 88766654443322112223334 2355678888999999999999988887654
No 325
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=98.10 E-value=0.0021 Score=48.71 Aligned_cols=168 Identities=16% Similarity=0.215 Sum_probs=100.4
Q ss_pred EEEecCcCcEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeeeeecC--CeeEEEECCCCCeEEEEcCCCcEEEEEc
Q 026765 60 IELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSG--ENINITYKPDGTHIAVGNRDDELTILDV 137 (233)
Q Consensus 60 ~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~d~~i~i~d~ 137 (233)
..+++-...++.++|+|+...+++.....+.|..++.. |+..+...+.+ ....+++..++.++++.-.++.+.++++
T Consensus 15 ~~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~-G~vlr~i~l~g~~D~EgI~y~g~~~~vl~~Er~~~L~~~~~ 93 (248)
T PF06977_consen 15 KPLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSLD-GKVLRRIPLDGFGDYEGITYLGNGRYVLSEERDQRLYIFTI 93 (248)
T ss_dssp EE-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEETT---EEEEEE-SS-SSEEEEEE-STTEEEEEETTTTEEEEEEE
T ss_pred eECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcCC-CCEEEEEeCCCCCCceeEEEECCCEEEEEEcCCCcEEEEEE
Confidence 35666667799999999877788888888899888874 66666665543 4556888888877777767888988887
Q ss_pred CCCe----e--eeeeec------CceeeEEEECCCCCEEEEEeCCCeEEEEecCC---ceeeeE--Ee------eecCce
Q 026765 138 RKFK----P--IHRRKF------GYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPS---LRPLDT--VV------AHTAGC 194 (233)
Q Consensus 138 ~~~~----~--~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~~~~~--~~------~~~~~v 194 (233)
.... . ...... +.....++|++.++.++++-+..-..++..+. ...+.. .. .....+
T Consensus 94 ~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~ 173 (248)
T PF06977_consen 94 DDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKLFVRDL 173 (248)
T ss_dssp ----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT--SS--
T ss_pred eccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccceeccc
Confidence 3211 1 112222 23478899999988888887776666665532 111111 00 123346
Q ss_pred eEEEECCCCC-EEEEeeCCCcEEEEecCCcEEEEee
Q 026765 195 YCIAIDPMGR-YFAVGSADSLVSLWDISEMLCVRTF 229 (233)
Q Consensus 195 ~~i~~~p~~~-~las~s~dg~v~iwd~~~~~~i~~~ 229 (233)
.+++++|... +++....+..|.++| .+|..+..+
T Consensus 174 S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~ 208 (248)
T PF06977_consen 174 SGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSL 208 (248)
T ss_dssp -EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEE
T ss_pred cceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEE
Confidence 7889998754 566667788899999 567766554
No 326
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=98.06 E-value=0.0024 Score=51.89 Aligned_cols=159 Identities=18% Similarity=0.240 Sum_probs=115.0
Q ss_pred EEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeeeeecCCeeEEEECCCCCeEEEEcC---CCcEEEEEcCCCeeeee
Q 026765 69 VDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNR---DDELTILDVRKFKPIHR 145 (233)
Q Consensus 69 v~~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~---d~~i~i~d~~~~~~~~~ 145 (233)
-..++.++.+.+..+....+..|.+.|....+.............++++|+++.+.++.. ++.+.+.|..+...+..
T Consensus 76 p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~ 155 (381)
T COG3391 76 PAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGLGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTAT 155 (381)
T ss_pred ccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeEeeeccCCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEE
Confidence 345677777777777777789999999888777777666667778999999988776655 67888999887777766
Q ss_pred eecCceeeEEEECCCCCEEEEEe-CCCeEEEEecCCceeee-E---EeeecCceeEEEECCCCCEEEEeeCC---CcEEE
Q 026765 146 RKFGYEVNEIAWNMTGEMFFLTT-GNGTVEVLTYPSLRPLD-T---VVAHTAGCYCIAIDPMGRYFAVGSAD---SLVSL 217 (233)
Q Consensus 146 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~~~~~-~---~~~~~~~v~~i~~~p~~~~las~s~d---g~v~i 217 (233)
...+.....++++|+|+.++... .++.+.+++........ . ...-......+.++|+|.++...-.. +.+.+
T Consensus 156 ~~vG~~P~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~ 235 (381)
T COG3391 156 IPVGNTPTGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVRGSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLK 235 (381)
T ss_pred EecCCCcceEEECCCCCeEEEEecCCCeEEEEeCCCcceeccccccccccCCCCceEEECCCCCEEEEEeccCCCceEEE
Confidence 55554448899999999766665 78999999976544332 1 11122334678999999865443332 68999
Q ss_pred EecCCcEEEE
Q 026765 218 WDISEMLCVR 227 (233)
Q Consensus 218 wd~~~~~~i~ 227 (233)
.|...+....
T Consensus 236 id~~~~~v~~ 245 (381)
T COG3391 236 IDTATGNVTA 245 (381)
T ss_pred EeCCCceEEE
Confidence 9988776544
No 327
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.04 E-value=2.7e-05 Score=64.33 Aligned_cols=79 Identities=19% Similarity=0.274 Sum_probs=69.6
Q ss_pred CceeeEEEECCCCCEEEEEeCCCeEEEEecCCceeeeEEeeecCcee-EEEECCCCCEEEEeeCCCcEEEEecCCcEEEE
Q 026765 149 GYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAHTAGCY-CIAIDPMGRYFAVGSADSLVSLWDISEMLCVR 227 (233)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~-~i~~~p~~~~las~s~dg~v~iwd~~~~~~i~ 227 (233)
+..+..+.|+|.-.+++.+..+|.+.+..+. .+.+-++.-++..++ +++|.|||+.||.|-.||+|++-|+.++..+.
T Consensus 20 ~~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DGkllaVg~kdG~I~L~Dve~~~~l~ 98 (665)
T KOG4640|consen 20 PINIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDGKLLAVGFKDGTIRLHDVEKGGRLV 98 (665)
T ss_pred ccceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCCCEEEEEecCCeEEEEEccCCCcee
Confidence 4567788999999999999999999988876 666777776777777 99999999999999999999999999998877
Q ss_pred e
Q 026765 228 T 228 (233)
Q Consensus 228 ~ 228 (233)
.
T Consensus 99 ~ 99 (665)
T KOG4640|consen 99 S 99 (665)
T ss_pred c
Confidence 6
No 328
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=98.04 E-value=0.00099 Score=54.87 Aligned_cols=145 Identities=12% Similarity=0.177 Sum_probs=79.8
Q ss_pred cCcCcEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeeeeecCCeeEEEECCCCCeEEEEcCCCcEEEEEcCCCeee
Q 026765 64 GHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPI 143 (233)
Q Consensus 64 ~h~~~v~~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~ 143 (233)
........+.++|++. +++. +.||...|+.....+... .+.....+|.+.++ +++-.....|.++.--..+..
T Consensus 30 ~~~~~p~~ls~npngr-~v~V-~g~geY~iyt~~~~r~k~----~G~g~~~vw~~~n~-yAv~~~~~~I~I~kn~~~~~~ 102 (443)
T PF04053_consen 30 SCEIYPQSLSHNPNGR-FVLV-CGDGEYEIYTALAWRNKA----FGSGLSFVWSSRNR-YAVLESSSTIKIYKNFKNEVV 102 (443)
T ss_dssp E-SS--SEEEE-TTSS-EEEE-EETTEEEEEETTTTEEEE----EEE-SEEEE-TSSE-EEEE-TTS-EEEEETTEE-TT
T ss_pred CCCcCCeeEEECCCCC-EEEE-EcCCEEEEEEccCCcccc----cCceeEEEEecCcc-EEEEECCCeEEEEEcCccccc
Confidence 3444578899999864 4444 678888888854433222 23345678888554 565555788998742222222
Q ss_pred eeeecCceeeEEEECCCCCEEEEEeCCCeEEEEecCCceeeeEEeeecCceeEEEECCCCCEEEEeeCCCcEEEEecCC
Q 026765 144 HRRKFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISE 222 (233)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~las~s~dg~v~iwd~~~ 222 (233)
...+.+..+..+-. |..+...+.+ .+.+||+.+.+.+..+... +|..+.|++++.++|..+.+ .+.|++.+.
T Consensus 103 k~i~~~~~~~~If~---G~LL~~~~~~-~i~~yDw~~~~~i~~i~v~--~vk~V~Ws~~g~~val~t~~-~i~il~~~~ 174 (443)
T PF04053_consen 103 KSIKLPFSVEKIFG---GNLLGVKSSD-FICFYDWETGKLIRRIDVS--AVKYVIWSDDGELVALVTKD-SIYILKYNL 174 (443)
T ss_dssp -----SS-EEEEE----SSSEEEEETT-EEEEE-TTT--EEEEESS---E-EEEEE-TTSSEEEEE-S--SEEEEEE-H
T ss_pred eEEcCCcccceEEc---CcEEEEECCC-CEEEEEhhHcceeeEEecC--CCcEEEEECCCCEEEEEeCC-eEEEEEecc
Confidence 23333334444433 7777666555 8999999999888877633 48899999999999988866 566666543
No 329
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=98.03 E-value=0.00014 Score=61.75 Aligned_cols=116 Identities=19% Similarity=0.206 Sum_probs=78.7
Q ss_pred CccccEEEEEECc-----------CCC-------EEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCC
Q 026765 18 GHKKKVHSVAWNC-----------TGT-------KLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHA 79 (233)
Q Consensus 18 ~H~~~V~~~~~~~-----------~~~-------~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~ 79 (233)
+|+..+++....| .++ .+|.|-..|+|-|.|+.+.. ....+.-|+..|.++.|-..
T Consensus 405 ~h~sGs~~~~~~p~p~~t~~~~~p~~n~~~~~~pLvAvGT~sGTV~vvdvst~~----v~~~fsvht~~VkgleW~g~-- 478 (1062)
T KOG1912|consen 405 SHSSGSTCVRMRPMPELTKVENDPGGNTPAGTVPLVAVGTNSGTVDVVDVSTNA----VAASFSVHTSLVKGLEWLGN-- 478 (1062)
T ss_pred CCCCCceeeecccCcccceeecCCCCCccceeeeeEEeecCCceEEEEEecchh----hhhhhcccccceeeeeeccc--
Confidence 5777777766544 122 46778889999999996532 12246678888988888654
Q ss_pred CEEEEEe----------CCCeEEEEECCCCeeeeeee----ecCCeeEEEECCCCCeEEEEcCCCcEEEEEcCC
Q 026765 80 DLIATAS----------GDKTVRLWDARSGKCSQQAE----LSGENINITYKPDGTHIAVGNRDDELTILDVRK 139 (233)
Q Consensus 80 ~~l~sg~----------~d~~i~iwd~~~~~~~~~~~----~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~ 139 (233)
.-++|.+ .-+.+.+-|+++|.....-. -..++..+..+..++|++..-.+.-+.+||+++
T Consensus 479 sslvSfsys~~n~~sg~vrN~l~vtdLrtGlsk~fR~l~~~despI~~irvS~~~~yLai~Fr~~plEiwd~kt 552 (1062)
T KOG1912|consen 479 SSLVSFSYSHVNSASGGVRNDLVVTDLRTGLSKRFRGLQKPDESPIRAIRVSSSGRYLAILFRREPLEIWDLKT 552 (1062)
T ss_pred eeEEEeeeccccccccceeeeEEEEEcccccccccccCCCCCcCcceeeeecccCceEEEEecccchHHHhhcc
Confidence 2333433 23456788899886433221 123455678888999999999999999999854
No 330
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.02 E-value=0.0028 Score=49.05 Aligned_cols=140 Identities=19% Similarity=0.247 Sum_probs=95.7
Q ss_pred EEEEEcCCCCCEEEEEeCCCe-EEEEECCCCeeeeeeeec-CCee--EEEECCCCCeEEEEcC-----CCcEEEEEcC-C
Q 026765 70 DQLCWDPKHADLIATASGDKT-VRLWDARSGKCSQQAELS-GENI--NITYKPDGTHIAVGNR-----DDELTILDVR-K 139 (233)
Q Consensus 70 ~~~~~~~~~~~~l~sg~~d~~-i~iwd~~~~~~~~~~~~~-~~~~--~~~~~~~~~~l~~~~~-----d~~i~i~d~~-~ 139 (233)
..++.+|.....++.+-.-|+ ..+||.++++....+... +..+ -..|++||++|++.-. .|.|-+||.. .
T Consensus 8 H~~a~~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs~dG~~LytTEnd~~~g~G~IgVyd~~~~ 87 (305)
T PF07433_consen 8 HGVAAHPTRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFSPDGRLLYTTENDYETGRGVIGVYDAARG 87 (305)
T ss_pred cceeeCCCCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEcCCCCEEEEeccccCCCcEEEEEEECcCC
Confidence 356778877788888888886 568999998876654332 2222 2689999999987654 3679999998 5
Q ss_pred Ceeeeeee-cCceeeEEEECCCCCEEEEEeC------------------CCeEEEEecCCceeeeE--E--eeecCceeE
Q 026765 140 FKPIHRRK-FGYEVNEIAWNMTGEMFFLTTG------------------NGTVEVLTYPSLRPLDT--V--VAHTAGCYC 196 (233)
Q Consensus 140 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~------------------~~~v~~~~~~~~~~~~~--~--~~~~~~v~~ 196 (233)
.+.+.... .+...-.+.+.|+|+.++++.+ +.++.+.|..+++.+.+ + .-|...+..
T Consensus 88 ~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRH 167 (305)
T PF07433_consen 88 YRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQLSIRH 167 (305)
T ss_pred cEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCceecChhhcCCceEEEecCCCceeeeeecCccccccceee
Confidence 55555443 3445567788999988877653 23444555566665555 3 226667888
Q ss_pred EEECCCCCEEEEe
Q 026765 197 IAIDPMGRYFAVG 209 (233)
Q Consensus 197 i~~~p~~~~las~ 209 (233)
++++++|..+...
T Consensus 168 La~~~~G~V~~a~ 180 (305)
T PF07433_consen 168 LAVDGDGTVAFAM 180 (305)
T ss_pred EEecCCCcEEEEE
Confidence 9998888765543
No 331
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.00 E-value=2.5e-05 Score=61.30 Aligned_cols=81 Identities=16% Similarity=0.225 Sum_probs=69.6
Q ss_pred EEecCcCcEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeeeeecCCeeEEEECCCC-CeEEEEcCCCcEEEEEcCC
Q 026765 61 ELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDG-THIAVGNRDDELTILDVRK 139 (233)
Q Consensus 61 ~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~d~~i~i~d~~~ 139 (233)
-+++|...|.+++|+|....++..++.+..|+|.|+++..++........+++++|+-|. ++|..|...|.+.+||++.
T Consensus 188 ~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~~~~wSC~wDlde~h~IYaGl~nG~VlvyD~R~ 267 (463)
T KOG1645|consen 188 ILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAYNQIWSCCWDLDERHVIYAGLQNGMVLVYDMRQ 267 (463)
T ss_pred cccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheeccCCceeeeeccCCcceeEEeccCceEEEEEccC
Confidence 356788899999999987778899999999999999999888888888888999997765 5677888899999999986
Q ss_pred Ce
Q 026765 140 FK 141 (233)
Q Consensus 140 ~~ 141 (233)
.+
T Consensus 268 ~~ 269 (463)
T KOG1645|consen 268 PE 269 (463)
T ss_pred CC
Confidence 43
No 332
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=97.98 E-value=0.0018 Score=53.40 Aligned_cols=148 Identities=18% Similarity=0.244 Sum_probs=80.1
Q ss_pred ceeeeCccccEEEEEECcCCCEEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCCeEE
Q 026765 13 SREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVR 92 (233)
Q Consensus 13 ~~~~~~H~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~ 92 (233)
.+.+....-....+.++|.|+.++.++ ||.-.|+.... ... .. .+....++|.+. ..+|.-.....|.
T Consensus 25 ~k~lg~~~~~p~~ls~npngr~v~V~g-~geY~iyt~~~----~r~--k~---~G~g~~~vw~~~--n~yAv~~~~~~I~ 92 (443)
T PF04053_consen 25 VKELGSCEIYPQSLSHNPNGRFVLVCG-DGEYEIYTALA----WRN--KA---FGSGLSFVWSSR--NRYAVLESSSTIK 92 (443)
T ss_dssp -EEEEE-SS--SEEEE-TTSSEEEEEE-TTEEEEEETTT----TEE--EE---EEE-SEEEE-TS--SEEEEE-TTS-EE
T ss_pred eccCCCCCcCCeeEEECCCCCEEEEEc-CCEEEEEEccC----Ccc--cc---cCceeEEEEecC--ccEEEEECCCeEE
Confidence 345544555678999999999988844 78777776321 111 11 133456778774 3456666688899
Q ss_pred EE-ECCCCeeeeeeeecCCeeEEEECCCCCeEEEEcCCCcEEEEEcCCCeeeeeeecCceeeEEEECCCCCEEEEEeCCC
Q 026765 93 LW-DARSGKCSQQAELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNG 171 (233)
Q Consensus 93 iw-d~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 171 (233)
|+ ++.. .....+..+.....+.. |..|+..+.+ .+.+||..+.+.+.+.... ++..+.|++++++++..+.+
T Consensus 93 I~kn~~~-~~~k~i~~~~~~~~If~---G~LL~~~~~~-~i~~yDw~~~~~i~~i~v~-~vk~V~Ws~~g~~val~t~~- 165 (443)
T PF04053_consen 93 IYKNFKN-EVVKSIKLPFSVEKIFG---GNLLGVKSSD-FICFYDWETGKLIRRIDVS-AVKYVIWSDDGELVALVTKD- 165 (443)
T ss_dssp EEETTEE--TT-----SS-EEEEE----SSSEEEEETT-EEEEE-TTT--EEEEESS--E-EEEEE-TTSSEEEEE-S--
T ss_pred EEEcCcc-ccceEEcCCcccceEEc---CcEEEEECCC-CEEEEEhhHcceeeEEecC-CCcEEEEECCCCEEEEEeCC-
Confidence 96 3322 21112222222222222 7777766555 7999999998888777754 37899999999999988766
Q ss_pred eEEEEecC
Q 026765 172 TVEVLTYP 179 (233)
Q Consensus 172 ~v~~~~~~ 179 (233)
.+.+++..
T Consensus 166 ~i~il~~~ 173 (443)
T PF04053_consen 166 SIYILKYN 173 (443)
T ss_dssp SEEEEEE-
T ss_pred eEEEEEec
Confidence 56676653
No 333
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=97.97 E-value=0.00037 Score=60.68 Aligned_cols=141 Identities=13% Similarity=0.147 Sum_probs=95.4
Q ss_pred CCCEEE-EEeCCCeEEEEECCCCeeeeeeeecCCeeEEEECCC-------CCeEEEEcCCCcEEEEEcCCCe--eee---
Q 026765 78 HADLIA-TASGDKTVRLWDARSGKCSQQAELSGENINITYKPD-------GTHIAVGNRDDELTILDVRKFK--PIH--- 144 (233)
Q Consensus 78 ~~~~l~-sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~-------~~~l~~~~~d~~i~i~d~~~~~--~~~--- 144 (233)
+..+|+ .......|.-.|+..|+.+..+..+....-..+.|+ ....++|-.+..+..||+|... .+.
T Consensus 492 d~~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~~~~ 571 (794)
T PF08553_consen 492 DRNMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVDSQS 571 (794)
T ss_pred ccceEeecCCCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceeeccc
Confidence 344544 444567888899999999998887765534455553 2345678888999999998532 221
Q ss_pred -eeecCceeeEEEECCCCCEEEEEeCCCeEEEEecCCceeeeE-EeeecCceeEEEECCCCCEEEEeeCCCcEEEEecC
Q 026765 145 -RRKFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDT-VVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDIS 221 (233)
Q Consensus 145 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~~~~~~~v~~i~~~p~~~~las~s~dg~v~iwd~~ 221 (233)
.+..+....+++-+.+ .++++|+.+|.|++||-. ++..++ +.+-+.+|..|..+.||+++++. .+..+.+.+..
T Consensus 572 k~Y~~~~~Fs~~aTt~~-G~iavgs~~G~IRLyd~~-g~~AKT~lp~lG~pI~~iDvt~DGkwilaT-c~tyLlLi~t~ 647 (794)
T PF08553_consen 572 KQYSSKNNFSCFATTED-GYIAVGSNKGDIRLYDRL-GKRAKTALPGLGDPIIGIDVTADGKWILAT-CKTYLLLIDTL 647 (794)
T ss_pred cccccCCCceEEEecCC-ceEEEEeCCCcEEeeccc-chhhhhcCCCCCCCeeEEEecCCCcEEEEe-ecceEEEEEEe
Confidence 1122233455554444 478999999999999943 333333 44668899999999999997644 35667777753
No 334
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=97.94 E-value=2.2e-06 Score=70.75 Aligned_cols=162 Identities=19% Similarity=0.281 Sum_probs=100.9
Q ss_pred eeCccccEEEEEECc-CCCEEEEE----eCCCCEEEEecccCCCCceeeEEEec-CcCcEEEEEEcCCCCCEEEEEeCCC
Q 026765 16 YTGHKKKVHSVAWNC-TGTKLASG----SVDQTARVWHIEPHGHGKVKDIELRG-HADSVDQLCWDPKHADLIATASGDK 89 (233)
Q Consensus 16 ~~~H~~~V~~~~~~~-~~~~l~s~----~~D~~v~vW~~~~~~~~~~~~~~~~~-h~~~v~~~~~~~~~~~~l~sg~~d~ 89 (233)
..+|....++++|++ |.++||.| -.|-.++|||+...-........+.+ ......+++|.. +.+++.+|...+
T Consensus 98 tp~~ar~Ct~lAwneLDtn~LAagldkhrnds~~~Iwdi~s~ltvPke~~~fs~~~l~gqns~cwlr-d~klvlaGm~sr 176 (783)
T KOG1008|consen 98 TPGYARPCTSLAWNELDTNHLAAGLDKHRNDSSLKIWDINSLLTVPKESPLFSSSTLDGQNSVCWLR-DTKLVLAGMTSR 176 (783)
T ss_pred cccccccccccccccccHHHHHhhhhhhcccCCccceecccccCCCccccccccccccCcccccccc-Ccchhhcccccc
Confidence 357888999999997 45677776 34678999998753111111222333 445666889984 567888999999
Q ss_pred eEEEEECCCCeeeeeeeecCCeeEEEECC-CCCeEEEEcCCCcEEEEE-cCCCee-eeeee-----cCceeeEEEECCCC
Q 026765 90 TVRLWDARSGKCSQQAELSGENINITYKP-DGTHIAVGNRDDELTILD-VRKFKP-IHRRK-----FGYEVNEIAWNMTG 161 (233)
Q Consensus 90 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~d~~i~i~d-~~~~~~-~~~~~-----~~~~~~~~~~~~~~ 161 (233)
.++++|++.............+..+..+| .+.++++-. |+.+.+|| .++.+. +.... ....+..++|.|..
T Consensus 177 ~~~ifdlRqs~~~~~svnTk~vqG~tVdp~~~nY~cs~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtr 255 (783)
T KOG1008|consen 177 SVHIFDLRQSLDSVSSVNTKYVQGITVDPFSPNYFCSNS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTR 255 (783)
T ss_pred hhhhhhhhhhhhhhhhhhhhhcccceecCCCCCceeccc-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCC
Confidence 99999998542211111122333456677 667877655 89999999 444321 11111 12247788898865
Q ss_pred CEE--EEEeCCCeEEEEecC
Q 026765 162 EMF--FLTTGNGTVEVLTYP 179 (233)
Q Consensus 162 ~~~--~~~~~~~~v~~~~~~ 179 (233)
.-+ ++.-..++++.++..
T Consensus 256 tglla~l~RdS~tIrlydi~ 275 (783)
T KOG1008|consen 256 TGLLAVLSRDSITIRLYDIC 275 (783)
T ss_pred cchhhhhccCcceEEEeccc
Confidence 433 333456788888763
No 335
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=97.93 E-value=0.0018 Score=42.15 Aligned_cols=97 Identities=15% Similarity=0.235 Sum_probs=63.7
Q ss_pred EEcCCCCCEEEEEeCCCeEEEEECCCCeeeeeeeecCCeeEEEECCCCCeEEEEcCCCcEEEEEcCCCeeeeeeecCcee
Q 026765 73 CWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEV 152 (233)
Q Consensus 73 ~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~ 152 (233)
.|..++.+-|+.|+.|..||+|+-. ....+......+..+.-... ..++.+..+|+|-+|+.. +...+.+....+
T Consensus 9 d~d~dg~~eLlvGs~D~~IRvf~~~--e~~~Ei~e~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~~--~RlWRiKSK~~~ 83 (111)
T PF14783_consen 9 DFDGDGENELLVGSDDFEIRVFKGD--EIVAEITETDKVTSLCSLGG-GRFAYALANGTVGVYDRS--QRLWRIKSKNQV 83 (111)
T ss_pred ecCCCCcceEEEecCCcEEEEEeCC--cEEEEEecccceEEEEEcCC-CEEEEEecCCEEEEEeCc--ceeeeeccCCCe
Confidence 3444556778899999999999854 45555555666677665555 578899999999999853 334444444445
Q ss_pred eEEEE-CCC--C-CEEEEEeCCCeEE
Q 026765 153 NEIAW-NMT--G-EMFFLTTGNGTVE 174 (233)
Q Consensus 153 ~~~~~-~~~--~-~~~~~~~~~~~v~ 174 (233)
.++.+ ..+ | ..+++|-.+|.+.
T Consensus 84 ~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 84 TSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred EEEEEEcCCCCCceEEEEEecCCeEE
Confidence 55543 222 2 2467777777664
No 336
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=97.93 E-value=8e-06 Score=70.08 Aligned_cols=162 Identities=14% Similarity=0.203 Sum_probs=113.2
Q ss_pred EecCcCcEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeeeeecC-CeeEEEECCCCCeEEEEcCC--CcEEEEEcC
Q 026765 62 LRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSG-ENINITYKPDGTHIAVGNRD--DELTILDVR 138 (233)
Q Consensus 62 ~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~d--~~i~i~d~~ 138 (233)
++.|....++++|+.. .+.|+.|+..|.|+++++.+|........++ .+..+.-+.+|..+++.+.- .-..+|++.
T Consensus 1097 frd~~~~fTc~afs~~-~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaLW~~~ 1175 (1516)
T KOG1832|consen 1097 FRDETALFTCIAFSGG-TNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSALWDAS 1175 (1516)
T ss_pred hhccccceeeEEeecC-CceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchHHHhccc
Confidence 5667888999999975 5678899999999999999887655444443 33345556677776654433 246789875
Q ss_pred C-CeeeeeeecCceeeEEEECCCCCEEEEEeCCCeEEEEecCCceeeeEE-eee---cCceeEEEECCCCCEEEEeeCCC
Q 026765 139 K-FKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTV-VAH---TAGCYCIAIDPMGRYFAVGSADS 213 (233)
Q Consensus 139 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~-~~~---~~~v~~i~~~p~~~~las~s~dg 213 (233)
. +.+.+.+. +-.++.|+...+.-++|+......+||..+..++.++ .+- .-.-++..|+|+.+.+. .||
T Consensus 1176 s~~~~~Hsf~---ed~~vkFsn~~q~r~~gt~~d~a~~YDvqT~~~l~tylt~~~~~~y~~n~a~FsP~D~LIl---ndG 1249 (1516)
T KOG1832|consen 1176 STGGPRHSFD---EDKAVKFSNSLQFRALGTEADDALLYDVQTCSPLQTYLTDTVTSSYSNNLAHFSPCDTLIL---NDG 1249 (1516)
T ss_pred cccCcccccc---ccceeehhhhHHHHHhcccccceEEEecccCcHHHHhcCcchhhhhhccccccCCCcceEe---eCc
Confidence 4 33333322 3446677777777788888889999999988776663 221 11236788999988766 455
Q ss_pred cEEEEecCCcEEEEeeecC
Q 026765 214 LVSLWDISEMLCVRTFTKL 232 (233)
Q Consensus 214 ~v~iwd~~~~~~i~~~~~~ 232 (233)
.+||++..+-|+.|.++
T Consensus 1250 --vLWDvR~~~aIh~FD~f 1266 (1516)
T KOG1832|consen 1250 --VLWDVRIPEAIHRFDQF 1266 (1516)
T ss_pred --eeeeeccHHHHhhhhhh
Confidence 47999988888888765
No 337
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=97.90 E-value=0.0073 Score=47.91 Aligned_cols=131 Identities=13% Similarity=0.148 Sum_probs=81.6
Q ss_pred CeEEEEECCCC-----ee--eeeeeecCCeeEEEECCCCCeEEEEcCCCcEEEEEcCCCe-eeeeeecCceeeEEEECCC
Q 026765 89 KTVRLWDARSG-----KC--SQQAELSGENINITYKPDGTHIAVGNRDDELTILDVRKFK-PIHRRKFGYEVNEIAWNMT 160 (233)
Q Consensus 89 ~~i~iwd~~~~-----~~--~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~-~~~~~~~~~~~~~~~~~~~ 160 (233)
|.|.++++... +. .......+.+.+++-- ++ +++++. ++.+.+|++...+ .........+...+.....
T Consensus 62 Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~-~~-~lv~~~-g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~~ 138 (321)
T PF03178_consen 62 GRILVFEISESPENNFKLKLIHSTEVKGPVTAICSF-NG-RLVVAV-GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSVF 138 (321)
T ss_dssp EEEEEEEECSS-----EEEEEEEEEESS-EEEEEEE-TT-EEEEEE-TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEEE
T ss_pred cEEEEEEEEcccccceEEEEEEEEeecCcceEhhhh-CC-EEEEee-cCEEEEEEccCcccchhhheecceEEEEEEecc
Confidence 89999999884 22 3344556777776544 34 444333 4789999987766 3333333222233333334
Q ss_pred CCEEEEEeCCCeEEEEecCC-ceeeeEEee--ecCceeEEEECCCCCEEEEeeCCCcEEEEecCC
Q 026765 161 GEMFFLTTGNGTVEVLTYPS-LRPLDTVVA--HTAGCYCIAIDPMGRYFAVGSADSLVSLWDISE 222 (233)
Q Consensus 161 ~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~--~~~~v~~i~~~p~~~~las~s~dg~v~iwd~~~ 222 (233)
++++++++....+.++.++. ...+..+.. ....++++.+-++++.++.+..+|.+.++....
T Consensus 139 ~~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~ 203 (321)
T PF03178_consen 139 KNYILVGDAMKSVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNP 203 (321)
T ss_dssp TTEEEEEESSSSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-S
T ss_pred ccEEEEEEcccCEEEEEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEECC
Confidence 67999999988888886543 333333333 234577788876667999999999999998873
No 338
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.88 E-value=0.00064 Score=57.24 Aligned_cols=117 Identities=10% Similarity=0.174 Sum_probs=81.1
Q ss_pred ccccEEEEEECcCCCEEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCCeEEEEECCC
Q 026765 19 HKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARS 98 (233)
Q Consensus 19 H~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~iwd~~~ 98 (233)
|...|.--+++..+++++-|++-|.|.+|+-... ........+-...+.....++. .+++|.|+..|.|.++-+..
T Consensus 32 ~~~~v~lTc~dst~~~l~~GsS~G~lyl~~R~~~---~~~~~~~~~~~~~~~~~~vs~~-e~lvAagt~~g~V~v~ql~~ 107 (726)
T KOG3621|consen 32 FPARVKLTCVDATEEYLAMGSSAGSVYLYNRHTG---EMRKLKNEGATGITCVRSVSSV-EYLVAAGTASGRVSVFQLNK 107 (726)
T ss_pred CcceEEEEEeecCCceEEEecccceEEEEecCch---hhhcccccCccceEEEEEecch-hHhhhhhcCCceEEeehhhc
Confidence 5666666677788999999999999999874321 1111122233345555667765 46888899999999998766
Q ss_pred Ceeeeee-----ee--cCCeeEEEECCCCCeEEEEcCCCcEEEEEcCC
Q 026765 99 GKCSQQA-----EL--SGENINITYKPDGTHIAVGNRDDELTILDVRK 139 (233)
Q Consensus 99 ~~~~~~~-----~~--~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~ 139 (233)
+...... .. +..+.+++|++++..+.+|...|++..-.+..
T Consensus 108 ~~p~~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s 155 (726)
T KOG3621|consen 108 ELPRDLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDS 155 (726)
T ss_pred cCCCcceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEech
Confidence 4322111 11 33467899999999999999999988876654
No 339
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.86 E-value=0.0044 Score=53.62 Aligned_cols=177 Identities=10% Similarity=0.120 Sum_probs=107.4
Q ss_pred eeeCcccc-EEEEEECcCCCEEEEEeCCCC-----EEEEecccCCCCc-eeeE---EEec-----CcCcEEEEEEcCCCC
Q 026765 15 EYTGHKKK-VHSVAWNCTGTKLASGSVDQT-----ARVWHIEPHGHGK-VKDI---ELRG-----HADSVDQLCWDPKHA 79 (233)
Q Consensus 15 ~~~~H~~~-V~~~~~~~~~~~l~s~~~D~~-----v~vW~~~~~~~~~-~~~~---~~~~-----h~~~v~~~~~~~~~~ 79 (233)
.|..+... |..+....+.+.|+|-+.|+. |+||+++...... ...+ .... ...++.+++.+.+ -
T Consensus 59 ~fqa~~~siv~~L~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~-l 137 (933)
T KOG2114|consen 59 GFQAYEQSIVQFLYILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSED-L 137 (933)
T ss_pred hheecchhhhhHhhcccCceEEEEEeecCCCCceEEEEecccccCCCCCcceeeeeeeeccCCCCCCCcceEEEEEcc-c
Confidence 44445444 554444445578999887764 8999997542211 1111 2222 3456888888865 5
Q ss_pred CEEEEEeCCCeEEEEEC---CCC--eeeeeeeecCCeeEEEECCCCCe-EEEEcCCCcEEEEEcCCCeeeee--eecCce
Q 026765 80 DLIATASGDKTVRLWDA---RSG--KCSQQAELSGENINITYKPDGTH-IAVGNRDDELTILDVRKFKPIHR--RKFGYE 151 (233)
Q Consensus 80 ~~l~sg~~d~~i~iwd~---~~~--~~~~~~~~~~~~~~~~~~~~~~~-l~~~~~d~~i~i~d~~~~~~~~~--~~~~~~ 151 (233)
+.+|.|-.+|.|..+.- +.. +.........++..+++..++.- +.+++ ...+.+|.+....+... -..+..
T Consensus 138 ~~Iv~Gf~nG~V~~~~GDi~RDrgsr~~~~~~~~~pITgL~~~~d~~s~lFv~T-t~~V~~y~l~gr~p~~~~ld~~G~~ 216 (933)
T KOG2114|consen 138 KTIVCGFTNGLVICYKGDILRDRGSRQDYSHRGKEPITGLALRSDGKSVLFVAT-TEQVMLYSLSGRTPSLKVLDNNGIS 216 (933)
T ss_pred cEEEEEecCcEEEEEcCcchhccccceeeeccCCCCceeeEEecCCceeEEEEe-cceeEEEEecCCCcceeeeccCCcc
Confidence 68899999999998842 111 12222334456777888777765 22222 34588888864332222 234667
Q ss_pred eeEEEECCCCCEEEEEeCCCeEEEEecCCceeeeEEe-eecCce
Q 026765 152 VNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVV-AHTAGC 194 (233)
Q Consensus 152 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~-~~~~~v 194 (233)
.++..+++....++++... .+.+|+.+...+...+. +|....
T Consensus 217 lnCss~~~~t~qfIca~~e-~l~fY~sd~~~~cfaf~~g~kk~~ 259 (933)
T KOG2114|consen 217 LNCSSFSDGTYQFICAGSE-FLYFYDSDGRGPCFAFEVGEKKEM 259 (933)
T ss_pred ceeeecCCCCccEEEecCc-eEEEEcCCCcceeeeecCCCeEEE
Confidence 8888888766656666544 68888887766666666 555433
No 340
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.84 E-value=0.0013 Score=49.20 Aligned_cols=108 Identities=18% Similarity=0.118 Sum_probs=80.3
Q ss_pred CeEEEEcCCCcEEEEEcCCCeeeeeeecCceeeEEEECCCCCEEEEEeCCCeEEEEecCCceeeeEEeeecCceeEEEEC
Q 026765 121 THIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAHTAGCYCIAID 200 (233)
Q Consensus 121 ~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~i~~~ 200 (233)
.+++.|+..+.+.-.|..+++.......+..+.+-+.- -|+++++|+.+|.+++.+..+++.+..+..-+.--......
T Consensus 24 T~v~igSHs~~~~avd~~sG~~~We~ilg~RiE~sa~v-vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~~a~~d 102 (354)
T KOG4649|consen 24 TLVVIGSHSGIVIAVDPQSGNLIWEAILGVRIECSAIV-VGDFVVLGCYSGGLYFLCVKTGSQIWNFVILETVKVRAQCD 102 (354)
T ss_pred eEEEEecCCceEEEecCCCCcEEeehhhCceeeeeeEE-ECCEEEEEEccCcEEEEEecchhheeeeeehhhhccceEEc
Confidence 45667777788888888777766655555444433221 57889999999999999999997777665433322234567
Q ss_pred CCCCEEEEeeCCCcEEEEecCCcEEEEee
Q 026765 201 PMGRYFAVGSADSLVSLWDISEMLCVRTF 229 (233)
Q Consensus 201 p~~~~las~s~dg~v~iwd~~~~~~i~~~ 229 (233)
+++..+..|+.|++.+.-|..+-.|++..
T Consensus 103 ~~~glIycgshd~~~yalD~~~~~cVyks 131 (354)
T KOG4649|consen 103 FDGGLIYCGSHDGNFYALDPKTYGCVYKS 131 (354)
T ss_pred CCCceEEEecCCCcEEEecccccceEEec
Confidence 89999999999999999999988888763
No 341
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=97.82 E-value=0.0046 Score=50.53 Aligned_cols=145 Identities=15% Similarity=0.159 Sum_probs=89.4
Q ss_pred EEEEEeCCCeEEEEECCCCeeeeeeeecCCe--------eEEEECC--CCCeEEEEcCCCcEEEEEcCCCeeeeeeecCc
Q 026765 81 LIATASGDKTVRLWDARSGKCSQQAELSGEN--------INITYKP--DGTHIAVGNRDDELTILDVRKFKPIHRRKFGY 150 (233)
Q Consensus 81 ~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~--------~~~~~~~--~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~ 150 (233)
.++.++.++.+...|..+++........... ..+..+| .+..+++++.++.+..+|+.+++.+.......
T Consensus 207 ~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~sP~v~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~ 286 (394)
T PRK11138 207 GAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTTPVVVGGVVYALAYNGNLVALDLRSGQIVWKREYGS 286 (394)
T ss_pred EEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCCcEEECCEEEEEEcCCeEEEEECCCCCEEEeecCCC
Confidence 3556778888988898888654333221110 0011122 24566777788999999998887765544332
Q ss_pred eeeEEEECCCCCEEEEEeCCCeEEEEecCCceeeeEEeeecCc-eeEEEECCCCCEEEEeeCCCcEEEEecCCcEEEEee
Q 026765 151 EVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAHTAG-CYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTF 229 (233)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~-v~~i~~~p~~~~las~s~dg~v~iwd~~~~~~i~~~ 229 (233)
.. .+ ...+..+++.+.+|.+..++..+++.+-....-... ..+... .+.+|..++.||.+...|.++|+.+-++
T Consensus 287 ~~-~~--~~~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~sp~v--~~g~l~v~~~~G~l~~ld~~tG~~~~~~ 361 (394)
T PRK11138 287 VN-DF--AVDGGRIYLVDQNDRVYALDTRGGVELWSQSDLLHRLLTAPVL--YNGYLVVGDSEGYLHWINREDGRFVAQQ 361 (394)
T ss_pred cc-Cc--EEECCEEEEEcCCCeEEEEECCCCcEEEcccccCCCcccCCEE--ECCEEEEEeCCCEEEEEECCCCCEEEEE
Confidence 11 11 124667788888999999998877654322211111 111111 2567788999999999999999887665
Q ss_pred e
Q 026765 230 T 230 (233)
Q Consensus 230 ~ 230 (233)
.
T Consensus 362 ~ 362 (394)
T PRK11138 362 K 362 (394)
T ss_pred E
Confidence 3
No 342
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=97.82 E-value=4.9e-05 Score=65.14 Aligned_cols=112 Identities=15% Similarity=0.195 Sum_probs=87.3
Q ss_pred EEECCCCCeEEEEc----CCCcEEEEEcCCCeeeeeeecCceeeEEEECCCCCEEEEEeCCCeEEEEecCCceeeeEEee
Q 026765 114 ITYKPDGTHIAVGN----RDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVA 189 (233)
Q Consensus 114 ~~~~~~~~~l~~~~----~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 189 (233)
..|+|....+++++ ..|.+.||- .++++......+..+++++|+|..-.++.+=+-|.+.+|...+.+.......
T Consensus 21 ~SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr~Vt~P~hatSLCWHpe~~vLa~gwe~g~~~v~~~~~~e~htv~~t 99 (1416)
T KOG3617|consen 21 SSWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQRDVTYPVHATSLCWHPEEFVLAQGWEMGVSDVQKTNTTETHTVVET 99 (1416)
T ss_pred cccCCCCceeEEEEecCCCCceEEEEe-cCCCCCcccccceehhhhccChHHHHHhhccccceeEEEecCCceeeeeccC
Confidence 45667666666554 346788774 4555555555556788899999887788888899999999877666656668
Q ss_pred ecCceeEEEECCCCCEEEEeeCCCcEEEEecCCcEEE
Q 026765 190 HTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCV 226 (233)
Q Consensus 190 ~~~~v~~i~~~p~~~~las~s~dg~v~iwd~~~~~~i 226 (233)
|..+|..+.|||+|..|.++..-|.|.+|.......+
T Consensus 100 h~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d~~g~~ 136 (1416)
T KOG3617|consen 100 HPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYDVIGEI 136 (1416)
T ss_pred CCCCceeEEecCCCCeEEEcCCCceeEEEEeeecccc
Confidence 9999999999999999999999999999998754433
No 343
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=97.75 E-value=0.0053 Score=55.03 Aligned_cols=153 Identities=15% Similarity=0.172 Sum_probs=98.3
Q ss_pred CcEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeeeeecCCeeEEEECCCCCeEEEEcCCCcEEEEEc----CCCee
Q 026765 67 DSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRDDELTILDV----RKFKP 142 (233)
Q Consensus 67 ~~v~~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~----~~~~~ 142 (233)
+.|.++.|..+. +-++.+...|.|.+-|..+......-.....+.+++|+||...++..+.++++.+..- -..++
T Consensus 69 ~~i~s~~fl~d~-~~i~v~~~~G~iilvd~et~~~eivg~vd~GI~aaswS~Dee~l~liT~~~tll~mT~~f~~i~E~~ 147 (1265)
T KOG1920|consen 69 DEIVSVQFLADT-NSICVITALGDIILVDPETLELEIVGNVDNGISAASWSPDEELLALITGRQTLLFMTKDFEPIAEKP 147 (1265)
T ss_pred cceEEEEEeccc-ceEEEEecCCcEEEEcccccceeeeeeccCceEEEeecCCCcEEEEEeCCcEEEEEeccccchhccc
Confidence 578888888765 4455677888888888877655444455677788999999999998888777766431 00010
Q ss_pred e-------------------eeee----------------------cCceeeEEEECCCCCEEEEEe-----CCCeEEEE
Q 026765 143 I-------------------HRRK----------------------FGYEVNEIAWNMTGEMFFLTT-----GNGTVEVL 176 (233)
Q Consensus 143 ~-------------------~~~~----------------------~~~~~~~~~~~~~~~~~~~~~-----~~~~v~~~ 176 (233)
+ .+.. ....-..+.|--||+++++.. +...+++|
T Consensus 148 L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~RkirV~ 227 (1265)
T KOG1920|consen 148 LDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRKIRVY 227 (1265)
T ss_pred cccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCceeEEEe
Confidence 0 0000 001123488999999998842 33799999
Q ss_pred ecCCceeeeEEeeecCceeEEEECCCCCEEEEee---CCCcEEEEecC
Q 026765 177 TYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGS---ADSLVSLWDIS 221 (233)
Q Consensus 177 ~~~~~~~~~~~~~~~~~v~~i~~~p~~~~las~s---~dg~v~iwd~~ 221 (233)
+.+ +.....-..-...=.+++|-|.|..+|+-- +|+.|.+|..+
T Consensus 228 drE-g~Lns~se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErN 274 (1265)
T KOG1920|consen 228 DRE-GALNSTSEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERN 274 (1265)
T ss_pred ccc-chhhcccCcccccccceeecCCCCeEeeeeecCCCCcEEEEecC
Confidence 965 221111111112224799999999988744 45678888765
No 344
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=97.75 E-value=0.013 Score=46.40 Aligned_cols=172 Identities=15% Similarity=0.146 Sum_probs=97.2
Q ss_pred CCEEEEecccCC--CCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCe-eeeeeeecCCeeEEEECC
Q 026765 42 QTARVWHIEPHG--HGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGK-CSQQAELSGENINITYKP 118 (233)
Q Consensus 42 ~~v~vW~~~~~~--~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~ 118 (233)
|.|.++++.... ..++..+.-....++|++++-. ++.++ .| ..+.|.+|++...+ ..................
T Consensus 62 Gri~v~~i~~~~~~~~~l~~i~~~~~~g~V~ai~~~--~~~lv-~~-~g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~ 137 (321)
T PF03178_consen 62 GRILVFEISESPENNFKLKLIHSTEVKGPVTAICSF--NGRLV-VA-VGNKLYVYDLDNSKTLLKKAFYDSPFYITSLSV 137 (321)
T ss_dssp EEEEEEEECSS-----EEEEEEEEEESS-EEEEEEE--TTEEE-EE-ETTEEEEEEEETTSSEEEEEEE-BSSSEEEEEE
T ss_pred cEEEEEEEEcccccceEEEEEEEEeecCcceEhhhh--CCEEE-Ee-ecCEEEEEEccCcccchhhheecceEEEEEEec
Confidence 889999987521 1122222223356789988765 23444 33 34889999998877 555444444434444444
Q ss_pred CCCeEEEEcCCCcEEEEEcCC-Ce---eeeeeecCceeeEEEECCCCCEEEEEeCCCeEEEEecCC-------ce-eeeE
Q 026765 119 DGTHIAVGNRDDELTILDVRK-FK---PIHRRKFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPS-------LR-PLDT 186 (233)
Q Consensus 119 ~~~~l~~~~~d~~i~i~d~~~-~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-------~~-~~~~ 186 (233)
.++++++|.....+.++.... .. .+..-.....+.++.+=++++.+++++.+|.+.++..+. .. .+..
T Consensus 138 ~~~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~~~~~~~~~~~~L~~ 217 (321)
T PF03178_consen 138 FKNYILVGDAMKSVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNPEIPNSRDGDPKLER 217 (321)
T ss_dssp ETTEEEEEESSSSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-SS-SSTTTTTTBEEE
T ss_pred cccEEEEEEcccCEEEEEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEECCCCccccccccccee
Confidence 466999998888888774432 12 222222234567777765667999999999999998752 11 1211
Q ss_pred E-ee-ecCceeEE---EECCC--CC------EEEEeeCCCcEEE
Q 026765 187 V-VA-HTAGCYCI---AIDPM--GR------YFAVGSADSLVSL 217 (233)
Q Consensus 187 ~-~~-~~~~v~~i---~~~p~--~~------~las~s~dg~v~i 217 (233)
. .- .+..|+++ ++.|. +. .++-++.+|.|-+
T Consensus 218 ~~~f~lg~~v~~~~~~~l~~~~~~~~~~~~~~i~~~T~~G~Ig~ 261 (321)
T PF03178_consen 218 ISSFHLGDIVNSFRRGSLIPRSGSSESPNRPQILYGTVDGSIGV 261 (321)
T ss_dssp EEEEE-SS-EEEEEE--SS--SSSS-TTEEEEEEEEETTS-EEE
T ss_pred EEEEECCCccceEEEEEeeecCCCCcccccceEEEEecCCEEEE
Confidence 1 11 24567776 44552 22 3777888888873
No 345
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.74 E-value=0.017 Score=47.49 Aligned_cols=171 Identities=14% Similarity=0.204 Sum_probs=88.5
Q ss_pred CEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeeeeecCC-----eeEE---
Q 026765 43 TARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGE-----NINI--- 114 (233)
Q Consensus 43 ~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~-----~~~~--- 114 (233)
.|+||+... ..+..+.+.. +.+.++.|..+ ..|+.-..||.+++||+.... .+..... +...
T Consensus 62 ~I~iys~sG---~ll~~i~w~~--~~iv~~~wt~~--e~LvvV~~dG~v~vy~~~G~~---~fsl~~~i~~~~v~e~~i~ 131 (410)
T PF04841_consen 62 SIQIYSSSG---KLLSSIPWDS--GRIVGMGWTDD--EELVVVQSDGTVRVYDLFGEF---QFSLGEEIEEEKVLECRIF 131 (410)
T ss_pred EEEEECCCC---CEeEEEEECC--CCEEEEEECCC--CeEEEEEcCCEEEEEeCCCce---eechhhhccccCccccccc
Confidence 477776532 2234445544 78999999864 344566799999999986433 2211111 1111
Q ss_pred --EECCCCCeEEEEcCCCcEEEEEcCCCe-eeeee-ec-C----c----eeeE-EEECCCCCEEEEEeCCCeEEEEecCC
Q 026765 115 --TYKPDGTHIAVGNRDDELTILDVRKFK-PIHRR-KF-G----Y----EVNE-IAWNMTGEMFFLTTGNGTVEVLTYPS 180 (233)
Q Consensus 115 --~~~~~~~~l~~~~~d~~i~i~d~~~~~-~~~~~-~~-~----~----~~~~-~~~~~~~~~~~~~~~~~~v~~~~~~~ 180 (233)
.+..+| +++-..++.+.+..-.... ..... .. . . .... ..++.+....+....++.+.+.+...
T Consensus 132 ~~~~~~~G--ivvLt~~~~~~~v~n~~~~~~~~~~~~~p~~~~~~~~~~~~~~i~~l~~~~~~~i~~~~g~~i~~i~~~~ 209 (410)
T PF04841_consen 132 AIWFYKNG--IVVLTGNNRFYVVNNIDEPVKLRRLPEIPGLWTKFHWWPSWTVIPLLSSDRVVEILLANGETIYIIDENS 209 (410)
T ss_pred ccccCCCC--EEEECCCCeEEEEeCccccchhhccccCCCcccccccccccccceEeecCcceEEEEecCCEEEEEEccc
Confidence 222234 2222334444333211111 00000 00 0 0 0000 12333444444444455555444332
Q ss_pred ceeeeEEeeecCceeEEEECCCCCEEEEeeCCCcEEEEecCCcEEEEee
Q 026765 181 LRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTF 229 (233)
Q Consensus 181 ~~~~~~~~~~~~~v~~i~~~p~~~~las~s~dg~v~iwd~~~~~~i~~~ 229 (233)
.+. + ...+++..+++||+++++|.-..+|.+.|...+-.+++.+|
T Consensus 210 ~~~---i-~~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e~ 254 (410)
T PF04841_consen 210 FKQ---I-DSDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCEF 254 (410)
T ss_pred ccc---c-cCCCCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEEe
Confidence 211 1 12357899999999999999999999999887655555544
No 346
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.64 E-value=0.0004 Score=58.39 Aligned_cols=112 Identities=17% Similarity=0.302 Sum_probs=79.1
Q ss_pred cEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeeee-e-cCCeeEEEECCCCCeEEEEcCCCcEEEEEcCCCeeeee
Q 026765 68 SVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAE-L-SGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHR 145 (233)
Q Consensus 68 ~v~~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~-~-~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~ 145 (233)
.|.--+++.. .++++-|+.-|.+.+|+-..+.....-. . ++.......+++..++|.|+..+.|.++-+....+-..
T Consensus 35 ~v~lTc~dst-~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~~~ 113 (726)
T KOG3621|consen 35 RVKLTCVDAT-EEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPRDL 113 (726)
T ss_pred eEEEEEeecC-CceEEEecccceEEEEecCchhhhcccccCccceEEEEEecchhHhhhhhcCCceEEeehhhccCCCcc
Confidence 3333344443 4678899999999999987665322211 1 22334467788888899999999999987755332211
Q ss_pred -------eecCceeeEEEECCCCCEEEEEeCCCeEEEEecCC
Q 026765 146 -------RKFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPS 180 (233)
Q Consensus 146 -------~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 180 (233)
..++..|+++.|++++..+.+|...|+|....+..
T Consensus 114 ~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s 155 (726)
T KOG3621|consen 114 DYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDS 155 (726)
T ss_pred eeeccccccCCceEEEEEecccccEEeecCCCceEEEEEech
Confidence 11356799999999999999999999999887765
No 347
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.64 E-value=0.0084 Score=45.08 Aligned_cols=111 Identities=16% Similarity=0.104 Sum_probs=79.0
Q ss_pred CCCCEEEEEeCCCeEEEEECCCCeeeeeeeecCCeeEEEECCCCCeEEEEcCCCcEEEEEcCCCeeeeeeecCceee-EE
Q 026765 77 KHADLIATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVN-EI 155 (233)
Q Consensus 77 ~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~-~~ 155 (233)
+...+++.|+-.+.+.--|..+|....+........+-+.- -|+.++.|...+.+.+.+..++...........+. ..
T Consensus 21 dskT~v~igSHs~~~~avd~~sG~~~We~ilg~RiE~sa~v-vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~~a 99 (354)
T KOG4649|consen 21 DSKTLVVIGSHSGIVIAVDPQSGNLIWEAILGVRIECSAIV-VGDFVVLGCYSGGLYFLCVKTGSQIWNFVILETVKVRA 99 (354)
T ss_pred CCceEEEEecCCceEEEecCCCCcEEeehhhCceeeeeeEE-ECCEEEEEEccCcEEEEEecchhheeeeeehhhhccce
Confidence 34567778888888888888888766555444433321111 35679999999999999998887665544332332 23
Q ss_pred EECCCCCEEEEEeCCCeEEEEecCCceeeeEEe
Q 026765 156 AWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVV 188 (233)
Q Consensus 156 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 188 (233)
...+++..+..++.|++.+..|.++...+.+..
T Consensus 100 ~~d~~~glIycgshd~~~yalD~~~~~cVyksk 132 (354)
T KOG4649|consen 100 QCDFDGGLIYCGSHDGNFYALDPKTYGCVYKSK 132 (354)
T ss_pred EEcCCCceEEEecCCCcEEEecccccceEEecc
Confidence 457899999999999999999998877766543
No 348
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=97.61 E-value=0.0019 Score=55.86 Aligned_cols=111 Identities=14% Similarity=0.349 Sum_probs=63.3
Q ss_pred eCccccEEEEEECcCCCEEEEEeCCCCEEEEecccCCCCceeeEEEecC--cCcEEEEEE--cCCCCC-----EEEEEeC
Q 026765 17 TGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGH--ADSVDQLCW--DPKHAD-----LIATASG 87 (233)
Q Consensus 17 ~~H~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h--~~~v~~~~~--~~~~~~-----~l~sg~~ 87 (233)
..|+.+|..+.|||+|..|+|+..-|.|.+|.....+ .+....+..| .+.++-++| ++++.. ..+..+.
T Consensus 98 ~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d~~g--~~q~~~~~~hel~~~ltl~cfRL~~~~Ee~~~laKaaVtgD 175 (1416)
T KOG3617|consen 98 ETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYDVIG--EIQTSNIMQHELNDQLTLWCFRLSYDREEKFKLAKAAVTGD 175 (1416)
T ss_pred cCCCCCceeEEecCCCCeEEEcCCCceeEEEEeeecc--ccccchhhhhHhhceeeEEEEecCCChHHhhhhhhhhccCc
Confidence 4699999999999999999999999999999876321 1111111122 123333333 332111 1233344
Q ss_pred CCeEE-EEECCCCeeeeeeeecCCeeEEEECCCCCeEEEEcCCCcEEEEE
Q 026765 88 DKTVR-LWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRDDELTILD 136 (233)
Q Consensus 88 d~~i~-iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d 136 (233)
++.+- .++.+.....+.... .-.|+|..+..++.+|.+...|
T Consensus 176 e~alD~~fnwk~~~a~rs~~k-------sgv~~g~~F~~~~~~GtVyyvd 218 (1416)
T KOG3617|consen 176 ESALDEPFNWKESLAERSDEK-------SGVPKGTEFLFAGKSGTVYYVD 218 (1416)
T ss_pred hhhhcccccCccchhhccccc-------cCCCCCcEEEEEcCCceEEEEc
Confidence 44433 444332211111111 1246777888888888887777
No 349
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=97.61 E-value=0.003 Score=51.62 Aligned_cols=133 Identities=13% Similarity=0.108 Sum_probs=84.8
Q ss_pred EEEEEeCCCeEEEEECCCCeeeeeeeecCCeeEEEECCCCCeEEEEcCCCcEEEEEcCCCeeeeeeec-C-ceeeEEEEC
Q 026765 81 LIATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKF-G-YEVNEIAWN 158 (233)
Q Consensus 81 ~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~-~-~~~~~~~~~ 158 (233)
.++.++.++.+..+|..+++..-....... ..+. ..+..+..++.++.+..+|..+++.+..... . ........
T Consensus 258 ~vy~~~~~g~l~ald~~tG~~~W~~~~~~~-~~~~--~~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~sp~v- 333 (394)
T PRK11138 258 VVYALAYNGNLVALDLRSGQIVWKREYGSV-NDFA--VDGGRIYLVDQNDRVYALDTRGGVELWSQSDLLHRLLTAPVL- 333 (394)
T ss_pred EEEEEEcCCeEEEEECCCCCEEEeecCCCc-cCcE--EECCEEEEEcCCCeEEEEECCCCcEEEcccccCCCcccCCEE-
Confidence 455677889999999998875443332221 1111 2456777788899999999987766543221 1 11111111
Q ss_pred CCCCEEEEEeCCCeEEEEecCCceeeeEEeeecCceeE-EEECCCCCEEEEeeCCCcEEEEec
Q 026765 159 MTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAHTAGCYC-IAIDPMGRYFAVGSADSLVSLWDI 220 (233)
Q Consensus 159 ~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~-i~~~p~~~~las~s~dg~v~iwd~ 220 (233)
.+..+++++.+|.+..+|..+++.+.........+.+ -.+ .+..|..++.||.|..+++
T Consensus 334 -~~g~l~v~~~~G~l~~ld~~tG~~~~~~~~~~~~~~s~P~~--~~~~l~v~t~~G~l~~~~~ 393 (394)
T PRK11138 334 -YNGYLVVGDSEGYLHWINREDGRFVAQQKVDSSGFLSEPVV--ADDKLLIQARDGTVYAITR 393 (394)
T ss_pred -ECCEEEEEeCCCEEEEEECCCCCEEEEEEcCCCcceeCCEE--ECCEEEEEeCCceEEEEeC
Confidence 3567888899999999999998877665443333332 111 3457888899999988764
No 350
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=97.60 E-value=0.00018 Score=52.54 Aligned_cols=140 Identities=15% Similarity=0.179 Sum_probs=89.6
Q ss_pred EEEEeCCCeEEEEECCCCeeeee-eeecCCeeEEEECCCCCeEEEEcCCCcEEEEEcCCCeeeeeee-cC--ceeeEEEE
Q 026765 82 IATASGDKTVRLWDARSGKCSQQ-AELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRK-FG--YEVNEIAW 157 (233)
Q Consensus 82 l~sg~~d~~i~iwd~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~-~~--~~~~~~~~ 157 (233)
+..-+.|+.|+-++++.-+.... ....... .....-+..+++|+.++.+.+|.......+.... .. .-...+.-
T Consensus 33 l~~~sa~~~v~~~~~~k~k~s~rse~~~~e~--~~v~~~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~~~Ip~ 110 (238)
T KOG2444|consen 33 LRATSADGLVRERKVRKHKESCRSERFIDEG--QRVVTASAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESIDLGIPN 110 (238)
T ss_pred hccccCCcccccchhhhhhhhhhhhhhhhcc--eeecccCceEEeecccceEEEecCCccchHHHhhhcccccceecccc
Confidence 34557788888888765432111 1111111 1222345678899999999999865322222111 11 11222233
Q ss_pred CCCCCEEEEEeCCCeEEEEecCCceeeeEEeeec-CceeEEEECCCCCEEEEe--eCCCcEEEEecCCc
Q 026765 158 NMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAHT-AGCYCIAIDPMGRYFAVG--SADSLVSLWDISEM 223 (233)
Q Consensus 158 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~-~~v~~i~~~p~~~~las~--s~dg~v~iwd~~~~ 223 (233)
..++.+.++++.+|.++.++....+.......|. .++.....+..+++++.+ |.|..++.||+.+.
T Consensus 111 ~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~~ 179 (238)
T KOG2444|consen 111 GRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVEKI 179 (238)
T ss_pred ccccceeEEeccCCceeeeccccCceeeeeccccCCCcceeEEecCCceEEeeccccchhhhhcchhhh
Confidence 3456678899999999999998877766666677 566667777778888888 89999999998754
No 351
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.59 E-value=0.00073 Score=56.25 Aligned_cols=92 Identities=17% Similarity=0.315 Sum_probs=69.4
Q ss_pred cccEEEEEECcCCCEEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEE-EEEEcCCCCCEEEEEeCCCeEEEEECCC
Q 026765 20 KKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVD-QLCWDPKHADLIATASGDKTVRLWDARS 98 (233)
Q Consensus 20 ~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~-~~~~~~~~~~~l~sg~~d~~i~iwd~~~ 98 (233)
.-.|.-+.|+|.-..+|.+-.+|.|.+..++- .++ +.++-|...++ +++|.|+ +++|+.|-.||+|++-|+.+
T Consensus 20 ~~~i~~~ewnP~~dLiA~~t~~gelli~R~n~---qRl--wtip~p~~~v~~sL~W~~D-GkllaVg~kdG~I~L~Dve~ 93 (665)
T KOG4640|consen 20 PINIKRIEWNPKMDLIATRTEKGELLIHRLNW---QRL--WTIPIPGENVTASLCWRPD-GKLLAVGFKDGTIRLHDVEK 93 (665)
T ss_pred ccceEEEEEcCccchhheeccCCcEEEEEecc---cee--EeccCCCCccceeeeecCC-CCEEEEEecCCeEEEEEccC
Confidence 55688899999999999999999999988762 222 34554555565 9999998 57999999999999999998
Q ss_pred Ceeeee--eeecCCeeEEEEC
Q 026765 99 GKCSQQ--AELSGENINITYK 117 (233)
Q Consensus 99 ~~~~~~--~~~~~~~~~~~~~ 117 (233)
+..... +.....+.++-|+
T Consensus 94 ~~~l~~~~~s~e~~is~~~w~ 114 (665)
T KOG4640|consen 94 GGRLVSFLFSVETDISKGIWD 114 (665)
T ss_pred CCceeccccccccchheeecc
Confidence 876655 3333344444454
No 352
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=97.50 E-value=0.031 Score=44.06 Aligned_cols=156 Identities=14% Similarity=0.155 Sum_probs=88.4
Q ss_pred CCCCCEEEEEeCCCeEEEEECC-CCeeeeee--eecC---Cee-EEEECCCCCeEEEEcCCCcEEEEEcCCCeeeeeeec
Q 026765 76 PKHADLIATASGDKTVRLWDAR-SGKCSQQA--ELSG---ENI-NITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKF 148 (233)
Q Consensus 76 ~~~~~~l~sg~~d~~i~iwd~~-~~~~~~~~--~~~~---~~~-~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~ 148 (233)
|.++.-+.+-+.||.+.-..+. .|+..+.. .+.. +.. .-++...+..++=.+.+|.+.-.|+...........
T Consensus 144 P~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~~~~~~~ 223 (342)
T PF06433_consen 144 PSGNRGFSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSRDGGRLYFVSYEGNVYSADLSGDSAKFGKPW 223 (342)
T ss_dssp EEETTEEEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S--EEETTTTEEEEEBTTSEEEEEEETTSSEEEEEEE
T ss_pred ecCCCceEEEecCCceEEEEECCCCCEeEeeccccCCCCcccccccceECCCCeEEEEecCCEEEEEeccCCcccccCcc
Confidence 4444567788999999988886 34433221 1111 111 123333444444467788888888765442221111
Q ss_pred C-------------ceeeEEEECCCCCEE-EEEe-------CCC--eEEEEecCCceeeeEEeeecCceeEEEECCCCC-
Q 026765 149 G-------------YEVNEIAWNMTGEMF-FLTT-------GNG--TVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGR- 204 (233)
Q Consensus 149 ~-------------~~~~~~~~~~~~~~~-~~~~-------~~~--~v~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~- 204 (233)
. ....-+++++..+.+ ++.. .++ .|.++|..+.+.+..+.. ...+.+|+.+.+.+
T Consensus 224 ~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l-~~~~~Si~Vsqd~~P 302 (342)
T PF06433_consen 224 SLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPL-EHPIDSIAVSQDDKP 302 (342)
T ss_dssp ESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEE-EEEESEEEEESSSS-
T ss_pred cccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeC-CCccceEEEccCCCc
Confidence 0 123346777655444 3332 122 455667888888887764 23577999998776
Q ss_pred EEEEe-eCCCcEEEEecCCcEEEEeeecC
Q 026765 205 YFAVG-SADSLVSLWDISEMLCVRTFTKL 232 (233)
Q Consensus 205 ~las~-s~dg~v~iwd~~~~~~i~~~~~~ 232 (233)
+|.+. ..++.+.|||..+|+.+++.+++
T Consensus 303 ~L~~~~~~~~~l~v~D~~tGk~~~~~~~l 331 (342)
T PF06433_consen 303 LLYALSAGDGTLDVYDAATGKLVRSIEQL 331 (342)
T ss_dssp EEEEEETTTTEEEEEETTT--EEEEE---
T ss_pred EEEEEcCCCCeEEEEeCcCCcEEeehhcc
Confidence 55444 45899999999999999998765
No 353
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=97.43 E-value=0.00054 Score=37.43 Aligned_cols=34 Identities=18% Similarity=0.325 Sum_probs=29.5
Q ss_pred cCceeEEEECCCCCEEEEeeCCCcEEEEecCCcEE
Q 026765 191 TAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLC 225 (233)
Q Consensus 191 ~~~v~~i~~~p~~~~las~s~dg~v~iwd~~~~~~ 225 (233)
...|.+++|+|...+||.|+.||.|.|+.+ +++.
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qr 44 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQR 44 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCcC
Confidence 346889999999999999999999999998 4443
No 354
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.43 E-value=0.0041 Score=51.12 Aligned_cols=137 Identities=12% Similarity=0.152 Sum_probs=92.2
Q ss_pred EEEEEeCCCeEEEEECCCCeeeeeeeecCCeeEEEECCCCC-------eEEEEcCCCcEEEEEcCCCee--e-----eee
Q 026765 81 LIATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDGT-------HIAVGNRDDELTILDVRKFKP--I-----HRR 146 (233)
Q Consensus 81 ~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~-------~l~~~~~d~~i~i~d~~~~~~--~-----~~~ 146 (233)
++.++.....+.--|+..|+.+..+.++..+.-+.+.|+.+ .-++|-.+..+.-||+|-... + +++
T Consensus 348 il~~~~~~~~l~klDIE~GKIVeEWk~~~di~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~kqy 427 (644)
T KOG2395|consen 348 ILMDGGEQDKLYKLDIERGKIVEEWKFEDDINMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSKQY 427 (644)
T ss_pred EeeCCCCcCcceeeecccceeeeEeeccCCcceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeecccc
Confidence 45677777778888999999998888877655566666543 235677888999999874222 1 111
Q ss_pred ecCceeeEEEECCCCCEEEEEeCCCeEEEEecCCceeeeE-EeeecCceeEEEECCCCCEEEEeeCCCcEEEEec
Q 026765 147 KFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDT-VVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDI 220 (233)
Q Consensus 147 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~-~~~~~~~v~~i~~~p~~~~las~s~dg~v~iwd~ 220 (233)
..+..-.|.+-+ ...++++|+.+|.|++||- .++..++ +.+-+.+|..|..+.+|++|++. .+..+.+-++
T Consensus 428 ~~k~nFsc~aTT-~sG~IvvgS~~GdIRLYdr-i~~~AKTAlPgLG~~I~hVdvtadGKwil~T-c~tyLlLi~t 499 (644)
T KOG2395|consen 428 STKNNFSCFATT-ESGYIVVGSLKGDIRLYDR-IGRRAKTALPGLGDAIKHVDVTADGKWILAT-CKTYLLLIDT 499 (644)
T ss_pred ccccccceeeec-CCceEEEeecCCcEEeehh-hhhhhhhcccccCCceeeEEeeccCcEEEEe-cccEEEEEEE
Confidence 111122333323 3458999999999999996 4443333 56778899999999999987644 3555655554
No 355
>PRK13616 lipoprotein LpqB; Provisional
Probab=97.43 E-value=0.012 Score=50.60 Aligned_cols=149 Identities=11% Similarity=0.064 Sum_probs=84.1
Q ss_pred CcEEEEEEcCCCCCEEEEEe-----CCC--eEEEEECCCCeeeeeeeecCCeeEEEECCCCCeEEEEcCC----------
Q 026765 67 DSVDQLCWDPKHADLIATAS-----GDK--TVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRD---------- 129 (233)
Q Consensus 67 ~~v~~~~~~~~~~~~l~sg~-----~d~--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d---------- 129 (233)
..+...+++|++..+.+... .|. .|.+++... . ...+........-.|+|+|..++.....
T Consensus 350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg-~-~~~lt~g~~~t~PsWspDG~~lw~v~dg~~~~~v~~~~ 427 (591)
T PRK13616 350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGG-V-AVQVLEGHSLTRPSWSLDADAVWVVVDGNTVVRVIRDP 427 (591)
T ss_pred cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCC-c-ceeeecCCCCCCceECCCCCceEEEecCcceEEEeccC
Confidence 45778889998876655542 243 444445422 2 2322222234557899998877665432
Q ss_pred --CcEEEEEcCCCeeeeeeecCceeeEEEECCCCCEEEEEeCCCeEEE---EecCCcee-e---eEEe-eecCceeEEEE
Q 026765 130 --DELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNGTVEV---LTYPSLRP-L---DTVV-AHTAGCYCIAI 199 (233)
Q Consensus 130 --~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~---~~~~~~~~-~---~~~~-~~~~~v~~i~~ 199 (233)
+.+.+.++....... .....+..+.|++||..++... ++.+.+ -....++. + ..+. .-...+.+++|
T Consensus 428 ~~gql~~~~vd~ge~~~--~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~~~l~W 504 (591)
T PRK13616 428 ATGQLARTPVDASAVAS--RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQYALTNPREVGPGLGDTAVSLDW 504 (591)
T ss_pred CCceEEEEeccCchhhh--ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCceeecccEEeecccCCccccceE
Confidence 223333443322221 2345699999999999988776 467766 33333331 1 1122 12233578999
Q ss_pred CCCCCEEEEeeCCCcEEEEecC
Q 026765 200 DPMGRYFAVGSADSLVSLWDIS 221 (233)
Q Consensus 200 ~p~~~~las~s~dg~v~iwd~~ 221 (233)
.+++.++ .+..++...+|.+.
T Consensus 505 ~~~~~L~-V~~~~~~~~v~~v~ 525 (591)
T PRK13616 505 RTGDSLV-VGRSDPEHPVWYVN 525 (591)
T ss_pred ecCCEEE-EEecCCCCceEEEe
Confidence 9988854 55656655666653
No 356
>PHA02713 hypothetical protein; Provisional
Probab=97.29 E-value=0.011 Score=50.60 Aligned_cols=143 Identities=8% Similarity=0.040 Sum_probs=75.8
Q ss_pred CCEEEEEeCCC-----eEEEEECCCCeeeeeeeecCCe--eEEEECCCCCeEEEEcCCC---------------------
Q 026765 79 ADLIATASGDK-----TVRLWDARSGKCSQQAELSGEN--INITYKPDGTHIAVGNRDD--------------------- 130 (233)
Q Consensus 79 ~~~l~sg~~d~-----~i~iwd~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~d~--------------------- 130 (233)
+++.+.||.++ .+..||..+.+........... ..++ .-++...+.|+.++
T Consensus 352 g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~~~mp~~r~~~~~~-~~~g~IYviGG~~~~~~~~~~~~~~~~~~~~~~~~ 430 (557)
T PHA02713 352 DTIYAIGGQNGTNVERTIECYTMGDDKWKMLPDMPIALSSYGMC-VLDQYIYIIGGRTEHIDYTSVHHMNSIDMEEDTHS 430 (557)
T ss_pred CEEEEECCcCCCCCCceEEEEECCCCeEEECCCCCcccccccEE-EECCEEEEEeCCCcccccccccccccccccccccc
Confidence 46667787754 4778998876654322222111 1122 22566667777542
Q ss_pred --cEEEEEcCCCeeeeeeecCce-eeEEEECCCCCEEEEEeCC------CeEEEEecCC---ceeeeEEeeecCceeEEE
Q 026765 131 --ELTILDVRKFKPIHRRKFGYE-VNEIAWNMTGEMFFLTTGN------GTVEVLTYPS---LRPLDTVVAHTAGCYCIA 198 (233)
Q Consensus 131 --~i~i~d~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~------~~v~~~~~~~---~~~~~~~~~~~~~v~~i~ 198 (233)
.+..||+++.+......+..+ ........+++..+.|+.+ ..+..||..+ .+.+..+...-.....+.
T Consensus 431 ~~~ve~YDP~td~W~~v~~m~~~r~~~~~~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~~~ 510 (557)
T PHA02713 431 SNKVIRYDTVNNIWETLPNFWTGTIRPGVVSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALHTIL 510 (557)
T ss_pred cceEEEECCCCCeEeecCCCCcccccCcEEEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccceeEE
Confidence 366788776544322221111 1111122356777777643 2456787664 333333332222222333
Q ss_pred ECCCCCEEEEeeCCC--cEEEEecCCcE
Q 026765 199 IDPMGRYFAVGSADS--LVSLWDISEML 224 (233)
Q Consensus 199 ~~p~~~~las~s~dg--~v~iwd~~~~~ 224 (233)
+ +++..++|+.|+ .+..||..+.+
T Consensus 511 ~--~~~iyv~Gg~~~~~~~e~yd~~~~~ 536 (557)
T PHA02713 511 H--DNTIMMLHCYESYMLQDTFNVYTYE 536 (557)
T ss_pred E--CCEEEEEeeecceeehhhcCccccc
Confidence 3 678899999888 67778877653
No 357
>PRK13616 lipoprotein LpqB; Provisional
Probab=97.28 E-value=0.089 Score=45.33 Aligned_cols=185 Identities=14% Similarity=0.213 Sum_probs=96.9
Q ss_pred ccEEEEEECcCCCEEEEEe------CCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeC-------
Q 026765 21 KKVHSVAWNCTGTKLASGS------VDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASG------- 87 (233)
Q Consensus 21 ~~V~~~~~~~~~~~l~s~~------~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~------- 87 (233)
..+...+.+|+|+.+|..- .|..-.+|-....... ..+ ..+. ....-.|+|++..+.+....
T Consensus 350 ~~vsspaiSpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~~--~~l-t~g~--~~t~PsWspDG~~lw~v~dg~~~~~v~ 424 (591)
T PRK13616 350 GNITSAALSRSGRQVAAVVTLGRGAPDPASSLWVGPLGGVA--VQV-LEGH--SLTRPSWSLDADAVWVVVDGNTVVRVI 424 (591)
T ss_pred cCcccceECCCCCEEEEEEeecCCCCCcceEEEEEeCCCcc--eee-ecCC--CCCCceECCCCCceEEEecCcceEEEe
Confidence 4577889999999876554 3555567755432211 111 2332 36677899986544333211
Q ss_pred ----CCeEEEEECCCCeeeeeeeecCCeeEEEECCCCCeEEEEcCCCcEEE---EEcCCCe-ee-e--eee--cCceeeE
Q 026765 88 ----DKTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRDDELTI---LDVRKFK-PI-H--RRK--FGYEVNE 154 (233)
Q Consensus 88 ----d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i---~d~~~~~-~~-~--~~~--~~~~~~~ 154 (233)
.+.+.+.++..+.... .+.+.+..+.|+|||.+++... ++.+.+ -....+. .+ . ... ....+..
T Consensus 425 ~~~~~gql~~~~vd~ge~~~--~~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~~~l~~~~~l~~~l~~~~~~ 501 (591)
T PRK13616 425 RDPATGQLARTPVDASAVAS--RVPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQYALTNPREVGPGLGDTAVS 501 (591)
T ss_pred ccCCCceEEEEeccCchhhh--ccCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCceeecccEEeecccCCcccc
Confidence 2233333444333222 3345677899999999988655 456665 3322222 11 0 011 1123577
Q ss_pred EEECCCCCEEEEEeCCCeEEEEecCC-ceeeeEEee--ecCceeEEEECCCCCEEEEeeCCCcEE
Q 026765 155 IAWNMTGEMFFLTTGNGTVEVLTYPS-LRPLDTVVA--HTAGCYCIAIDPMGRYFAVGSADSLVS 216 (233)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~~~~~~--~~~~v~~i~~~p~~~~las~s~dg~v~ 216 (233)
+.|..++.++ ++..++...+|...- +.....+.. ...++.+|+-++. .+.....+|.+.
T Consensus 502 l~W~~~~~L~-V~~~~~~~~v~~v~vDG~~~~~~~~~n~~~~v~~vaa~~~--~iyv~~~~g~~~ 563 (591)
T PRK13616 502 LDWRTGDSLV-VGRSDPEHPVWYVNLDGSNSDALPSRNLSAPVVAVAASPS--TVYVTDARAVLQ 563 (591)
T ss_pred ceEecCCEEE-EEecCCCCceEEEecCCccccccCCCCccCceEEEecCCc--eEEEEcCCceEE
Confidence 8999888865 444444444554321 211111122 2456677777763 344445566443
No 358
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=97.23 E-value=0.055 Score=41.18 Aligned_cols=168 Identities=13% Similarity=0.122 Sum_probs=84.4
Q ss_pred cccEEEEEECcC------CCEEEEEeCCCCEEEEecccCCC---CceeeEEEec-CcCcEEEEEEcCCCCCEEEEEeCCC
Q 026765 20 KKKVHSVAWNCT------GTKLASGSVDQTARVWHIEPHGH---GKVKDIELRG-HADSVDQLCWDPKHADLIATASGDK 89 (233)
Q Consensus 20 ~~~V~~~~~~~~------~~~l~s~~~D~~v~vW~~~~~~~---~~~~~~~~~~-h~~~v~~~~~~~~~~~~l~sg~~d~ 89 (233)
..+|-.+.|-+- ...|+.-.++|.++=+-+..... .......+.. +...|.++.++|..+-+++.|+...
T Consensus 91 ~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~ 170 (282)
T PF15492_consen 91 SDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQN 170 (282)
T ss_pred ccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEEEecccCCCceeEEEEcCCCCEEEEeccCCC
Confidence 456666767432 12466667788888877643211 1122233433 4778999999998654445544433
Q ss_pred eEEEEECCCCeeeeeeeecCCeeEE-EECCCCCeEEEEcCCCcEEEEEcCCCeeeee-eecCceeeEEEECCCCCEEEEE
Q 026765 90 TVRLWDARSGKCSQQAELSGENINI-TYKPDGTHIAVGNRDDELTILDVRKFKPIHR-RKFGYEVNEIAWNMTGEMFFLT 167 (233)
Q Consensus 90 ~i~iwd~~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 167 (233)
.-..+....-....--...+.+... ....+...-... .+..++.+-+.+.... ......+..|..+|+|+.+++.
T Consensus 171 ~~~~s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~---~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSPdg~~La~i 247 (282)
T PF15492_consen 171 QDGMSKASSCGLTAWRILSDSPYYKQVTSSEDDITASS---KRRGLLRIPSFKFFSRQGQEQDGIFKMSLSPDGSLLACI 247 (282)
T ss_pred CCccccccccCceEEEEcCCCCcEEEccccCccccccc---cccceeeccceeeeeccccCCCceEEEEECCCCCEEEEE
Confidence 2111110000000000111111111 111111111011 1122333322221111 1223468899999999999999
Q ss_pred eCCCeEEEEecCCceeeeEEeee
Q 026765 168 TGNGTVEVLTYPSLRPLDTVVAH 190 (233)
Q Consensus 168 ~~~~~v~~~~~~~~~~~~~~~~~ 190 (233)
.-+|.+.+|+++..+.......+
T Consensus 248 h~sG~lsLW~iPsL~~~~~W~~~ 270 (282)
T PF15492_consen 248 HFSGSLSLWEIPSLRLQRSWKQD 270 (282)
T ss_pred EcCCeEEEEecCcchhhcccchh
Confidence 99999999999887766655433
No 359
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=97.20 E-value=0.089 Score=42.98 Aligned_cols=192 Identities=14% Similarity=0.153 Sum_probs=99.8
Q ss_pred eCccccEEEEEECcCCCEEEEEeCCCCEEEEecccCCCCceeeEEEec------CcCcEEEEEEcC---C-C---CCEEE
Q 026765 17 TGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRG------HADSVDQLCWDP---K-H---ADLIA 83 (233)
Q Consensus 17 ~~H~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~------h~~~v~~~~~~~---~-~---~~~l~ 83 (233)
....++|++++.| +=-++|.|..||++.|-|+. +...+....+.. ....++++.|.. . + +-+++
T Consensus 83 ~~~~g~vtal~~S-~iGFvaigy~~G~l~viD~R--GPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~ 159 (395)
T PF08596_consen 83 DAKQGPVTALKNS-DIGFVAIGYESGSLVVIDLR--GPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLL 159 (395)
T ss_dssp ---S-SEEEEEE--BTSEEEEEETTSEEEEEETT--TTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEE
T ss_pred eccCCcEeEEecC-CCcEEEEEecCCcEEEEECC--CCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEE
Confidence 4458999999986 55689999999999999984 222232222222 234577787751 1 1 13567
Q ss_pred EEeCCCeEEEEECCC---Ceeeeee-----eecCCeeEEE-ECCC--------------------CCeEEEEcCCCcEEE
Q 026765 84 TASGDKTVRLWDARS---GKCSQQA-----ELSGENINIT-YKPD--------------------GTHIAVGNRDDELTI 134 (233)
Q Consensus 84 sg~~d~~i~iwd~~~---~~~~~~~-----~~~~~~~~~~-~~~~--------------------~~~l~~~~~d~~i~i 134 (233)
.|...|.+.+|.+.- ++....+ ...+.+..+. ++.+ -.-+++...+..+++
T Consensus 160 vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~irv 239 (395)
T PF08596_consen 160 VGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVSESDIRV 239 (395)
T ss_dssp EEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE-SSEEEE
T ss_pred EEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEcccceEE
Confidence 889999999998742 2111111 1112222221 2111 112344445667999
Q ss_pred EEcCCCeeeeeeecC-ceeeEEEE-----CCCCCEEEEEeCCCeEEEEecCCceeeeEEeeec----CceeEEEECCCCC
Q 026765 135 LDVRKFKPIHRRKFG-YEVNEIAW-----NMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAHT----AGCYCIAIDPMGR 204 (233)
Q Consensus 135 ~d~~~~~~~~~~~~~-~~~~~~~~-----~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~----~~v~~i~~~p~~~ 204 (233)
+.+.+.+..+..... .....+.+ ...+..+++-..+|.++++.++..+.+..+.... ..+....++++|.
T Consensus 240 ~~~~~~k~~~K~~~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP~Lkei~~~~l~~~~d~~~~~~ssis~~Gd 319 (395)
T PF08596_consen 240 FKPPKSKGAHKSFDDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLPSLKEIKSVSLPPPLDSRRLSSSSISRNGD 319 (395)
T ss_dssp E-TT---EEEEE-SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETTT--EEEEEE-SS---HHHHTT-EE-TTS-
T ss_pred EeCCCCcccceeeccccccceEEEEeecccCCceEEEEEECCCcEEEEECCCchHhhcccCCCccccccccccEECCCCC
Confidence 998776666544321 22223333 2245567778899999999999988887765432 2234566788888
Q ss_pred EEEEeeC
Q 026765 205 YFAVGSA 211 (233)
Q Consensus 205 ~las~s~ 211 (233)
.+.-.+.
T Consensus 320 i~~~~gp 326 (395)
T PF08596_consen 320 IFYWTGP 326 (395)
T ss_dssp EEEE-SS
T ss_pred EEEEeCc
Confidence 7665543
No 360
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=97.12 E-value=0.0019 Score=35.28 Aligned_cols=31 Identities=23% Similarity=0.399 Sum_probs=28.4
Q ss_pred cccEEEEEECcCCCEEEEEeCCCCEEEEecc
Q 026765 20 KKKVHSVAWNCTGTKLASGSVDQTARVWHIE 50 (233)
Q Consensus 20 ~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~ 50 (233)
...|.+++|+|..+++|.|..||.|.|+.++
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~ 41 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRLN 41 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEECC
Confidence 4569999999999999999999999999874
No 361
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=97.12 E-value=0.13 Score=43.38 Aligned_cols=195 Identities=12% Similarity=0.066 Sum_probs=107.9
Q ss_pred CCEEEEEeCCCCEEEEecccCCCCceeeEEEecC----cCcE--EEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeee
Q 026765 32 GTKLASGSVDQTARVWHIEPHGHGKVKDIELRGH----ADSV--DQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQA 105 (233)
Q Consensus 32 ~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h----~~~v--~~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~ 105 (233)
+..+..++.|+.|.-.|..+... ......... ...+ ..+... ++..++.++.++.|.-+|.++++..-..
T Consensus 61 ~g~vy~~~~~g~l~AlD~~tG~~--~W~~~~~~~~~~~~~~~~~~g~~~~--~~~~V~v~~~~g~v~AlD~~TG~~~W~~ 136 (488)
T cd00216 61 DGDMYFTTSHSALFALDAATGKV--LWRYDPKLPADRGCCDVVNRGVAYW--DPRKVFFGTFDGRLVALDAETGKQVWKF 136 (488)
T ss_pred CCEEEEeCCCCcEEEEECCCChh--hceeCCCCCccccccccccCCcEEc--cCCeEEEecCCCeEEEEECCCCCEeeee
Confidence 45666777788888887754321 111111110 0000 011111 2135667888999999999999876555
Q ss_pred eecCCe---eEEEECC--CCCeEEEEc---------CCCcEEEEEcCCCeeeeeeecCce--------------------
Q 026765 106 ELSGEN---INITYKP--DGTHIAVGN---------RDDELTILDVRKFKPIHRRKFGYE-------------------- 151 (233)
Q Consensus 106 ~~~~~~---~~~~~~~--~~~~l~~~~---------~d~~i~i~d~~~~~~~~~~~~~~~-------------------- 151 (233)
...... ..+.-+| .+..+++++ .++.+..+|..+++.........+
T Consensus 137 ~~~~~~~~~~~i~ssP~v~~~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~~~~~~~~~~~~~~~~~~g~ 216 (488)
T cd00216 137 GNNDQVPPGYTMTGAPTIVKKLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPDPNAFPTWGPDRQMWGPGGG 216 (488)
T ss_pred cCCCCcCcceEecCCCEEECCEEEEeccccccccCCCCcEEEEEECCCCceeeEeeccCCCcCCCCCCCCCcceecCCCC
Confidence 443321 0111111 123444443 357788889888877665543210
Q ss_pred --eeEEEECCCCCEEEEEeCCC------------------eEEEEecCCceeeeEEee--ecC----cee--EE-EE-CC
Q 026765 152 --VNEIAWNMTGEMFFLTTGNG------------------TVEVLTYPSLRPLDTVVA--HTA----GCY--CI-AI-DP 201 (233)
Q Consensus 152 --~~~~~~~~~~~~~~~~~~~~------------------~v~~~~~~~~~~~~~~~~--~~~----~v~--~i-~~-~p 201 (233)
.......+.+..+++++.++ .+..+|..+++..-.+.. |.. ... .+ .. .-
T Consensus 217 ~vw~~pa~d~~~g~V~vg~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~~~~~~~~s~p~~~~~~~~ 296 (488)
T cd00216 217 TSWASPTYDPKTNLVYVGTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTPHDLWDYDGPNQPSLADIKPK 296 (488)
T ss_pred CccCCeeEeCCCCEEEEECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCCCCCcccccCCCCeEEecccc
Confidence 01223334566778887665 688888888877655431 110 000 00 01 01
Q ss_pred CCC---EEEEeeCCCcEEEEecCCcEEEEeee
Q 026765 202 MGR---YFAVGSADSLVSLWDISEMLCVRTFT 230 (233)
Q Consensus 202 ~~~---~las~s~dg~v~iwd~~~~~~i~~~~ 230 (233)
++. .++.++.+|.+.-.|+++|+.+-.++
T Consensus 297 ~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~ 328 (488)
T cd00216 297 DGKPVPAIVHAPKNGFFYVLDRTTGKLISARP 328 (488)
T ss_pred CCCeeEEEEEECCCceEEEEECCCCcEeeEeE
Confidence 232 57788899999999999999876553
No 362
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=97.02 E-value=0.1 Score=40.33 Aligned_cols=199 Identities=12% Similarity=0.097 Sum_probs=108.4
Q ss_pred cccEEEEEECcCCCEEEEEeCCCCEEEEecccCCCCceee----------EEEecCcCcEEEEE--EcCCCCCEEEEEeC
Q 026765 20 KKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKD----------IELRGHADSVDQLC--WDPKHADLIATASG 87 (233)
Q Consensus 20 ~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~~~~~----------~~~~~h~~~v~~~~--~~~~~~~~l~sg~~ 87 (233)
...|..+..-|+-+.|+.-+ |+.+.++++..-....... .........+...+ -.+.+...|+ ...
T Consensus 35 ~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~-va~ 112 (275)
T PF00780_consen 35 LSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEPVSTSAPLAFPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLC-VAV 112 (275)
T ss_pred cceEEEEEEecccCEEEEEc-CCccEEEEchhhccccccccccccccccccccccccCCeeEEeeccccccceEEE-EEE
Confidence 34499999988877776654 6999999985322111000 00011223444444 1223334444 445
Q ss_pred CCeEEEEECCCC-----eeeeeeeecCCeeEEEECCCCCeEEEEcCCCcEEEEEcCCCeeeeeeecC-------------
Q 026765 88 DKTVRLWDARSG-----KCSQQAELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFG------------- 149 (233)
Q Consensus 88 d~~i~iwd~~~~-----~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~------------- 149 (233)
.+.|.+|..... +....+.....+..++|. ++.++.|..+ ...+.|+.+.....-....
T Consensus 113 kk~i~i~~~~~~~~~f~~~~ke~~lp~~~~~i~~~--~~~i~v~~~~-~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~ 189 (275)
T PF00780_consen 113 KKKILIYEWNDPRNSFSKLLKEISLPDPPSSIAFL--GNKICVGTSK-GFYLIDLNTGSPSELLDPSDSSSSFKSRNSSS 189 (275)
T ss_pred CCEEEEEEEECCcccccceeEEEEcCCCcEEEEEe--CCEEEEEeCC-ceEEEecCCCCceEEeCccCCcchhhhcccCC
Confidence 568888876543 344566677778888887 4577777654 4778888754432221110
Q ss_pred ceeeEEEECCCCCEEEEEeCCCeEEEEecCCceeee--EEeeecCceeEEEECCCCCEEEEeeCCCcEEEEecCCcEEEE
Q 026765 150 YEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLD--TVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVR 227 (233)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~--~~~~~~~~v~~i~~~p~~~~las~s~dg~v~iwd~~~~~~i~ 227 (233)
.++..+... +++++++- +....+.+. .+++.+ .+.- ...+.++++. ..||.+-+. +.|.||++.+++.++
T Consensus 190 ~~~~~~~~~-~~e~Ll~~--~~~g~fv~~-~G~~~r~~~i~W-~~~p~~~~~~--~pyli~~~~-~~iEV~~~~~~~lvQ 261 (275)
T PF00780_consen 190 KPLGIFQLS-DNEFLLCY--DNIGVFVNK-NGEPSRKSTIQW-SSAPQSVAYS--SPYLIAFSS-NSIEVRSLETGELVQ 261 (275)
T ss_pred CceEEEEeC-CceEEEEe--cceEEEEcC-CCCcCcccEEEc-CCchhEEEEE--CCEEEEECC-CEEEEEECcCCcEEE
Confidence 122222322 34444432 222333333 333332 2221 2234556663 357776665 449999999999999
Q ss_pred eeec
Q 026765 228 TFTK 231 (233)
Q Consensus 228 ~~~~ 231 (233)
++..
T Consensus 262 ~i~~ 265 (275)
T PF00780_consen 262 TIPL 265 (275)
T ss_pred EEEC
Confidence 8864
No 363
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.97 E-value=0.0049 Score=54.68 Aligned_cols=100 Identities=17% Similarity=0.341 Sum_probs=74.3
Q ss_pred CCCeEEEEcCCCcEEEEEcCC-Ceeee-eeecCceeeEEEECCCCCEEEEEeCCCeEEEEecCCceeeeEEeeecCceeE
Q 026765 119 DGTHIAVGNRDDELTILDVRK-FKPIH-RRKFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAHTAGCYC 196 (233)
Q Consensus 119 ~~~~l~~~~~d~~i~i~d~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~ 196 (233)
.+..++.|+..|.+-..|+.. ..+.+ ......++.+++|+.+|..++.|-++|.|.+||....++++.+.-|+.+...
T Consensus 98 ~~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~ 177 (1206)
T KOG2079|consen 98 VVVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTG 177 (1206)
T ss_pred eeeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccce
Confidence 345678888888888888765 23222 3344568999999999999999999999999999988888888777666444
Q ss_pred ---EEECCCCCEEEEeeCCCcEEEEec
Q 026765 197 ---IAIDPMGRYFAVGSADSLVSLWDI 220 (233)
Q Consensus 197 ---i~~~p~~~~las~s~dg~v~iwd~ 220 (233)
+.+..++..+.++...|. +|++
T Consensus 178 vi~v~~t~~nS~llt~D~~Gs--f~~l 202 (1206)
T KOG2079|consen 178 VIFVGRTSQNSKLLTSDTGGS--FWKL 202 (1206)
T ss_pred EEEEEEeCCCcEEEEccCCCc--eEEE
Confidence 445555566777777776 5654
No 364
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=96.89 E-value=0.056 Score=35.32 Aligned_cols=91 Identities=20% Similarity=0.189 Sum_probs=59.6
Q ss_pred CeEEEEcCCCcEEEEEcCCCeeeeeeecCceeeEEEECCCCCEEEEEeCCCeEEEEecCCceeeeEEeeecCceeEEEE-
Q 026765 121 THIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAHTAGCYCIAI- 199 (233)
Q Consensus 121 ~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~i~~- 199 (233)
+.|++|+.|..|++|+-. +.+........+..+.-... ..++.+..+|+|-+|+-.. .+-.... ...+.++.+
T Consensus 16 ~eLlvGs~D~~IRvf~~~--e~~~Ei~e~~~v~~L~~~~~-~~F~Y~l~NGTVGvY~~~~--RlWRiKS-K~~~~~~~~~ 89 (111)
T PF14783_consen 16 NELLVGSDDFEIRVFKGD--EIVAEITETDKVTSLCSLGG-GRFAYALANGTVGVYDRSQ--RLWRIKS-KNQVTSMAFY 89 (111)
T ss_pred ceEEEecCCcEEEEEeCC--cEEEEEecccceEEEEEcCC-CEEEEEecCCEEEEEeCcc--eeeeecc-CCCeEEEEEE
Confidence 578999999999999843 45555555556666665433 6799999999999997521 1222222 223555543
Q ss_pred CCC--C-CEEEEeeCCCcEEE
Q 026765 200 DPM--G-RYFAVGSADSLVSL 217 (233)
Q Consensus 200 ~p~--~-~~las~s~dg~v~i 217 (233)
+.+ | .-|++|=.+|.|-+
T Consensus 90 D~~gdG~~eLI~GwsnGkve~ 110 (111)
T PF14783_consen 90 DINGDGVPELIVGWSNGKVEV 110 (111)
T ss_pred cCCCCCceEEEEEecCCeEEe
Confidence 333 3 36888988888743
No 365
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=96.86 E-value=0.13 Score=39.12 Aligned_cols=198 Identities=13% Similarity=0.206 Sum_probs=102.4
Q ss_pred ceeeeCccccEEEEEECcCCCEEEE-EeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCCeE
Q 026765 13 SREYTGHKKKVHSVAWNCTGTKLAS-GSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTV 91 (233)
Q Consensus 13 ~~~~~~H~~~V~~~~~~~~~~~l~s-~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i 91 (233)
.+.+.+-...+..++|+|+.+.|++ ...++.|.-.+ ..+ ..+..+.+.+. .-.-.+++..+ ..++++--.++.+
T Consensus 14 ~~~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els--~~G-~vlr~i~l~g~-~D~EgI~y~g~-~~~vl~~Er~~~L 88 (248)
T PF06977_consen 14 AKPLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELS--LDG-KVLRRIPLDGF-GDYEGITYLGN-GRYVLSEERDQRL 88 (248)
T ss_dssp EEE-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEE--TT---EEEEEE-SS--SSEEEEEE-ST-TEEEEEETTTTEE
T ss_pred eeECCCccCCccccEEcCCCCeEEEEECCCCEEEEEc--CCC-CEEEEEeCCCC-CCceeEEEECC-CEEEEEEcCCCcE
Confidence 3566677778999999998775554 44555554444 322 23444455553 33456666544 3455555558889
Q ss_pred EEEECCCCe----e--eeeeee--c----CCeeEEEECCCCCeEEEEcCCCcEEEEEcCC---Ceeeeee---e------
Q 026765 92 RLWDARSGK----C--SQQAEL--S----GENINITYKPDGTHIAVGNRDDELTILDVRK---FKPIHRR---K------ 147 (233)
Q Consensus 92 ~iwd~~~~~----~--~~~~~~--~----~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~---~~~~~~~---~------ 147 (233)
.++++.... . ...+.. . .....++|+|.++.++++-+..-..+|.+.. ...+... .
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 168 (248)
T PF06977_consen 89 YIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVNGFPGGFDLFVSDDQDLDDDKL 168 (248)
T ss_dssp EEEEE----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEESTT-SS--EEEE-HHHH-HT-
T ss_pred EEEEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEccccCccceeeccccccccccc
Confidence 888873321 1 112221 1 1134699999988888887776666766543 1111110 0
Q ss_pred cCceeeEEEECCC-CCEEEEEeCCCeEEEEecCCceeeeEEeeec---------CceeEEEECCCCCEEEEeeCCCcEEE
Q 026765 148 FGYEVNEIAWNMT-GEMFFLTTGNGTVEVLTYPSLRPLDTVVAHT---------AGCYCIAIDPMGRYFAVGSADSLVSL 217 (233)
Q Consensus 148 ~~~~~~~~~~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~---------~~v~~i~~~p~~~~las~s~dg~v~i 217 (233)
.-..+..+.++|. +++++++..+..+..+| ..+++...+.-.. ...-.|+++++|+++++. +-+..++
T Consensus 169 ~~~d~S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~~gl~~~~~QpEGIa~d~~G~LYIvs-EpNlfy~ 246 (248)
T PF06977_consen 169 FVRDLSGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGFHGLSKDIPQPEGIAFDPDGNLYIVS-EPNLFYR 246 (248)
T ss_dssp -SS---EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTGGG-SS---SEEEEEE-TT--EEEEE-TTTEEEE
T ss_pred eeccccceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcccCcccccCCccEEEECCCCCEEEEc-CCceEEE
Confidence 1124567777765 56777788888888888 5666655443221 235689999998766554 4444443
No 366
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=96.86 E-value=0.1 Score=41.04 Aligned_cols=144 Identities=15% Similarity=0.178 Sum_probs=81.2
Q ss_pred EEcCCCCCEEEEEeCCCeEEEEECCCCeeeeeeeecCCeeE-EEECCCCCeEEEEcCCCcEEEEEcCCCee---eeeeec
Q 026765 73 CWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENIN-ITYKPDGTHIAVGNRDDELTILDVRKFKP---IHRRKF 148 (233)
Q Consensus 73 ~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~d~~i~i~d~~~~~~---~~~~~~ 148 (233)
.|.++.+.++.+--..+.|.-||..+++. ..+...+...+ ......+. |+++. . .+.+++...... +.....
T Consensus 31 ~w~~~~~~L~w~DI~~~~i~r~~~~~g~~-~~~~~p~~~~~~~~~d~~g~-Lv~~~-~-g~~~~~~~~~~~~t~~~~~~~ 106 (307)
T COG3386 31 VWDPDRGALLWVDILGGRIHRLDPETGKK-RVFPSPGGFSSGALIDAGGR-LIACE-H-GVRLLDPDTGGKITLLAEPED 106 (307)
T ss_pred cCcCCCCEEEEEeCCCCeEEEecCCcCce-EEEECCCCcccceeecCCCe-EEEEc-c-ccEEEeccCCceeEEeccccC
Confidence 46666666667777778888888876643 33333333333 33344443 33332 2 244555443332 111111
Q ss_pred ---CceeeEEEECCCCCEEEEEeC-----------CCeEEEEecCCceeeeEEeeecCceeEEEECCCCCEEEEee-CCC
Q 026765 149 ---GYEVNEIAWNMTGEMFFLTTG-----------NGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGS-ADS 213 (233)
Q Consensus 149 ---~~~~~~~~~~~~~~~~~~~~~-----------~~~v~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~las~s-~dg 213 (233)
....+.....++|.+.+.... .|.++.++. .+.....+..+-...+.|+||||++.|..+. ..+
T Consensus 107 ~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p-~g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~ 185 (307)
T COG3386 107 GLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDP-DGGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPAN 185 (307)
T ss_pred CCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcC-CCCEEEeecCcEEecCceEECCCCCEEEEEeCCCC
Confidence 124567788899888776544 143444443 3444444444455568899999997765555 457
Q ss_pred cEEEEecC
Q 026765 214 LVSLWDIS 221 (233)
Q Consensus 214 ~v~iwd~~ 221 (233)
.|.-|++.
T Consensus 186 ~i~r~~~d 193 (307)
T COG3386 186 RIHRYDLD 193 (307)
T ss_pred eEEEEecC
Confidence 78888776
No 367
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=96.85 E-value=0.2 Score=41.24 Aligned_cols=68 Identities=19% Similarity=0.162 Sum_probs=40.9
Q ss_pred ECCCCCeEEEEcCCCcEEEEEcCCCeeeeeeecCceeeEEEECCCCCEEEEEeCCCeEEEEecCCceeeeE
Q 026765 116 YKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDT 186 (233)
Q Consensus 116 ~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 186 (233)
++.+....+....++.+.+.+-...+. .....++..++.+|++++++.-..+|.+.+...+-.+.+..
T Consensus 186 l~~~~~~~i~~~~g~~i~~i~~~~~~~---i~~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~~e 253 (410)
T PF04841_consen 186 LSSDRVVEILLANGETIYIIDENSFKQ---IDSDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKLCE 253 (410)
T ss_pred eecCcceEEEEecCCEEEEEEcccccc---ccCCCCeEEEEECCCCCEEEEEECCCCEEEEECcccceeEE
Confidence 333444444444445555444322111 22234788999999999999999999998887544433333
No 368
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.82 E-value=0.019 Score=47.35 Aligned_cols=119 Identities=17% Similarity=0.209 Sum_probs=71.9
Q ss_pred eeeeCccccEEEEEECcCCC--EE-----EEEeCCCCEEEEecccCCCCceeeEEEecCcC--cEEEEEEcCCCCCEEEE
Q 026765 14 REYTGHKKKVHSVAWNCTGT--KL-----ASGSVDQTARVWHIEPHGHGKVKDIELRGHAD--SVDQLCWDPKHADLIAT 84 (233)
Q Consensus 14 ~~~~~H~~~V~~~~~~~~~~--~l-----~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~--~v~~~~~~~~~~~~l~s 84 (233)
.++.-|.. |+.+.+.|+.+ +| +.|-.|..|.-||+.-++..++...+.+.... ...|.+. .+...|+.
T Consensus 370 eEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~kqy~~k~nFsc~aT--T~sG~Ivv 446 (644)
T KOG2395|consen 370 EEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSKQYSTKNNFSCFAT--TESGYIVV 446 (644)
T ss_pred eEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCcceeeeeeccccccccccceeee--cCCceEEE
Confidence 34554554 88888988754 23 44667999999998654433322222222222 2334443 34557899
Q ss_pred EeCCCeEEEEECCCCeeeeeee--ecCCeeEEEECCCCCeEEEEcCCCcEEEEEc
Q 026765 85 ASGDKTVRLWDARSGKCSQQAE--LSGENINITYKPDGTHIAVGNRDDELTILDV 137 (233)
Q Consensus 85 g~~d~~i~iwd~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~ 137 (233)
||.+|.||+||- .++...+.. +..++.-+..+.+|++|+..+. ..+.+.++
T Consensus 447 gS~~GdIRLYdr-i~~~AKTAlPgLG~~I~hVdvtadGKwil~Tc~-tyLlLi~t 499 (644)
T KOG2395|consen 447 GSLKGDIRLYDR-IGRRAKTALPGLGDAIKHVDVTADGKWILATCK-TYLLLIDT 499 (644)
T ss_pred eecCCcEEeehh-hhhhhhhcccccCCceeeEEeeccCcEEEEecc-cEEEEEEE
Confidence 999999999997 343333322 2344555777889999876554 45555554
No 369
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=96.72 E-value=0.12 Score=45.69 Aligned_cols=93 Identities=16% Similarity=0.139 Sum_probs=61.2
Q ss_pred EEEEeCCCeEEEEECCCCe--eeeeee----ecCCeeEEEECCCCCeEEEEcCCCcEEEEEcCCCeeeee-e-ecCceee
Q 026765 82 IATASGDKTVRLWDARSGK--CSQQAE----LSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHR-R-KFGYEVN 153 (233)
Q Consensus 82 l~sg~~d~~i~iwd~~~~~--~~~~~~----~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~-~-~~~~~~~ 153 (233)
.+.|-.+..+.-||.|-.. ++.... ......+++-..+| +||+|+.+|.|++||-- +..... + ..+.+|.
T Consensus 545 tflGls~n~lfriDpR~~~~k~v~~~~k~Y~~~~~Fs~~aTt~~G-~iavgs~~G~IRLyd~~-g~~AKT~lp~lG~pI~ 622 (794)
T PF08553_consen 545 TFLGLSDNSLFRIDPRLSGNKLVDSQSKQYSSKNNFSCFATTEDG-YIAVGSNKGDIRLYDRL-GKRAKTALPGLGDPII 622 (794)
T ss_pred eEEEECCCceEEeccCCCCCceeeccccccccCCCceEEEecCCc-eEEEEeCCCcEEeeccc-chhhhhcCCCCCCCee
Confidence 3468888999999988643 221110 11122345656555 78999999999999943 222222 2 2467899
Q ss_pred EEEECCCCCEEEEEeCCCeEEEEe
Q 026765 154 EIAWNMTGEMFFLTTGNGTVEVLT 177 (233)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~v~~~~ 177 (233)
.+..+.||+++++.+..- +.+++
T Consensus 623 ~iDvt~DGkwilaTc~ty-LlLi~ 645 (794)
T PF08553_consen 623 GIDVTADGKWILATCKTY-LLLID 645 (794)
T ss_pred EEEecCCCcEEEEeecce-EEEEE
Confidence 999999999988877653 44444
No 370
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=96.67 E-value=0.28 Score=40.38 Aligned_cols=198 Identities=14% Similarity=0.196 Sum_probs=101.2
Q ss_pred cEEEEEECcCCCEEEEE-eCCC----CEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCC--------
Q 026765 22 KVHSVAWNCTGTKLASG-SVDQ----TARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGD-------- 88 (233)
Q Consensus 22 ~V~~~~~~~~~~~l~s~-~~D~----~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d-------- 88 (233)
.+...+++|+|+++|-+ +..| ++++.|+... ....-.+... ....+.|.+++..++++...+
T Consensus 125 ~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg---~~l~d~i~~~--~~~~~~W~~d~~~~~y~~~~~~~~~~~~~ 199 (414)
T PF02897_consen 125 SLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETG---KFLPDGIENP--KFSSVSWSDDGKGFFYTRFDEDQRTSDSG 199 (414)
T ss_dssp EEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTT---EEEEEEEEEE--ESEEEEECTTSSEEEEEECSTTTSS-CCG
T ss_pred EeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCC---cCcCCccccc--ccceEEEeCCCCEEEEEEeCcccccccCC
Confidence 44467899999988644 4444 4899998753 2111122211 112389999877666665333
Q ss_pred --CeEEEEECCCCeee--eeeeecC--C-eeEEEECCCCCeEEEEcCC----CcEEEEEcCCC-----eeeeeeecCcee
Q 026765 89 --KTVRLWDARSGKCS--QQAELSG--E-NINITYKPDGTHIAVGNRD----DELTILDVRKF-----KPIHRRKFGYEV 152 (233)
Q Consensus 89 --~~i~iwd~~~~~~~--~~~~~~~--~-~~~~~~~~~~~~l~~~~~d----~~i~i~d~~~~-----~~~~~~~~~~~~ 152 (233)
..|..|.+.+.... ..+.... . ...+..++++++++..... ..+.+.|+... ...........+
T Consensus 200 ~~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~ 279 (414)
T PF02897_consen 200 YPRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGV 279 (414)
T ss_dssp CCEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-
T ss_pred CCcEEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCce
Confidence 24778888766432 2222222 2 3467889999998754432 34677777653 111111111122
Q ss_pred -eEEEECCCCCEEEEEeC---CCeEEEEecCCcee---eeEEeeecCceeEEEECCCCCEEEE-eeCCC--cEEEEecCC
Q 026765 153 -NEIAWNMTGEMFFLTTG---NGTVEVLTYPSLRP---LDTVVAHTAGCYCIAIDPMGRYFAV-GSADS--LVSLWDISE 222 (233)
Q Consensus 153 -~~~~~~~~~~~~~~~~~---~~~v~~~~~~~~~~---~~~~~~~~~~v~~i~~~p~~~~las-~s~dg--~v~iwd~~~ 222 (233)
..+.. ..+.+++.... ++.+...++..... ...+..+...+.-..+...+.+|+. ...++ .|+++|+..
T Consensus 280 ~~~v~~-~~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l~~~~~~~~~Lvl~~~~~~~~~l~v~~~~~ 358 (414)
T PF02897_consen 280 EYYVDH-HGDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSLEDVSLFKDYLVLSYRENGSSRLRVYDLDD 358 (414)
T ss_dssp EEEEEE-ETTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEEEEEEEETTEEEEEEEETTEEEEEEEETT-
T ss_pred EEEEEc-cCCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeEEEEEEECCEEEEEEEECCccEEEEEECCC
Confidence 22222 24445544432 46666666655442 2244556654443444445555554 44454 488999883
Q ss_pred cEE
Q 026765 223 MLC 225 (233)
Q Consensus 223 ~~~ 225 (233)
+..
T Consensus 359 ~~~ 361 (414)
T PF02897_consen 359 GKE 361 (414)
T ss_dssp TEE
T ss_pred CcE
Confidence 333
No 371
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=96.51 E-value=0.26 Score=38.00 Aligned_cols=143 Identities=17% Similarity=0.198 Sum_probs=81.6
Q ss_pred cCCCEEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeee----
Q 026765 30 CTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQA---- 105 (233)
Q Consensus 30 ~~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~---- 105 (233)
..++.|+.|..+| +.+++... ...... . .+...|..+...|+-..+++ -.|+.+.++++..-......
T Consensus 5 ~~~~~L~vGt~~G-l~~~~~~~-~~~~~~---i-~~~~~I~ql~vl~~~~~llv--Lsd~~l~~~~L~~l~~~~~~~~~~ 76 (275)
T PF00780_consen 5 SWGDRLLVGTEDG-LYVYDLSD-PSKPTR---I-LKLSSITQLSVLPELNLLLV--LSDGQLYVYDLDSLEPVSTSAPLA 76 (275)
T ss_pred cCCCEEEEEECCC-EEEEEecC-Ccccee---E-eecceEEEEEEecccCEEEE--EcCCccEEEEchhhcccccccccc
Confidence 4578899998888 88888721 111111 1 12234888888876543333 34699999998653322210
Q ss_pred ---------ee--cCCeeEEE--ECCCCCeEEEEcCCCcEEEEEcCC----C-eeeeeeecCceeeEEEECCCCCEEEEE
Q 026765 106 ---------EL--SGENINIT--YKPDGTHIAVGNRDDELTILDVRK----F-KPIHRRKFGYEVNEIAWNMTGEMFFLT 167 (233)
Q Consensus 106 ---------~~--~~~~~~~~--~~~~~~~l~~~~~d~~i~i~d~~~----~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (233)
.. .......+ -.+.+...++.....++.+|.... . ...........+..+.|. ++.++++
T Consensus 77 ~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f~~~~ke~~lp~~~~~i~~~--~~~i~v~ 154 (275)
T PF00780_consen 77 FPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSFSKLLKEISLPDPPSSIAFL--GNKICVG 154 (275)
T ss_pred ccccccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccccceeEEEEcCCCcEEEEEe--CCEEEEE
Confidence 11 11111122 123344444455555888887644 2 344555556678888886 6677777
Q ss_pred eCCCeEEEEecCCcee
Q 026765 168 TGNGTVEVLTYPSLRP 183 (233)
Q Consensus 168 ~~~~~v~~~~~~~~~~ 183 (233)
..++ ..++|+.++..
T Consensus 155 ~~~~-f~~idl~~~~~ 169 (275)
T PF00780_consen 155 TSKG-FYLIDLNTGSP 169 (275)
T ss_pred eCCc-eEEEecCCCCc
Confidence 7554 67778775443
No 372
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=96.42 E-value=0.036 Score=44.61 Aligned_cols=90 Identities=10% Similarity=0.107 Sum_probs=54.0
Q ss_pred CcEEEEEcCCCeeeeeeecCceeeEEEECCCCCEEEEEeCCCeEEEEecCCceeee-EEee-------e---------cC
Q 026765 130 DELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLD-TVVA-------H---------TA 192 (233)
Q Consensus 130 ~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~~~~-------~---------~~ 192 (233)
+.+.++|+.+.+..........+....|+|+|+.++... ++.+.+.+..+.+... +..+ - -+
T Consensus 23 ~~y~i~d~~~~~~~~l~~~~~~~~~~~~sP~g~~~~~v~-~~nly~~~~~~~~~~~lT~dg~~~i~nG~~dwvyeEEv~~ 101 (353)
T PF00930_consen 23 GDYYIYDIETGEITPLTPPPPKLQDAKWSPDGKYIAFVR-DNNLYLRDLATGQETQLTTDGEPGIYNGVPDWVYEEEVFD 101 (353)
T ss_dssp EEEEEEETTTTEEEESS-EETTBSEEEE-SSSTEEEEEE-TTEEEEESSTTSEEEESES--TTTEEESB--HHHHHHTSS
T ss_pred eeEEEEecCCCceEECcCCccccccceeecCCCeeEEEe-cCceEEEECCCCCeEEeccccceeEEcCccceeccccccc
Confidence 467889998765443322234577889999999988776 4678888876553321 1111 0 01
Q ss_pred ceeEEEECCCCCEEEEeeC-CCcEEEEec
Q 026765 193 GCYCIAIDPMGRYFAVGSA-DSLVSLWDI 220 (233)
Q Consensus 193 ~v~~i~~~p~~~~las~s~-dg~v~iwd~ 220 (233)
.-..+-||||+++||.... +..|+.+.+
T Consensus 102 ~~~~~~WSpd~~~la~~~~d~~~v~~~~~ 130 (353)
T PF00930_consen 102 RRSAVWWSPDSKYLAFLRFDEREVPEYPL 130 (353)
T ss_dssp SSBSEEE-TTSSEEEEEEEE-TTS-EEEE
T ss_pred cccceEECCCCCEEEEEEECCcCCceEEe
Confidence 1246789999999987764 455555543
No 373
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.41 E-value=0.035 Score=49.58 Aligned_cols=93 Identities=17% Similarity=0.230 Sum_probs=64.5
Q ss_pred CEEEEEeCCCeEEEEECCCCee--eeeeeecCCeeEEEECCCCCeEEEEcCCCcEEEEEcCCCeeeeeeec-Cc---eee
Q 026765 80 DLIATASGDKTVRLWDARSGKC--SQQAELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKF-GY---EVN 153 (233)
Q Consensus 80 ~~l~sg~~d~~i~iwd~~~~~~--~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~-~~---~~~ 153 (233)
..++.|+..|.+-..|+...-+ .+-....+++.+++|+.+|+.++.|-.+|.|.+||+...++.+.... +. .+-
T Consensus 100 ~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~~ap~t~vi 179 (1206)
T KOG2079|consen 100 VPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEHGAPVTGVI 179 (1206)
T ss_pred eeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeecCCccceEE
Confidence 4577788888888888765322 22333456788999999999999999999999999987766655432 22 233
Q ss_pred EEEECCCCCEEEEEeCCCe
Q 026765 154 EIAWNMTGEMFFLTTGNGT 172 (233)
Q Consensus 154 ~~~~~~~~~~~~~~~~~~~ 172 (233)
.+.+...+..++++...|.
T Consensus 180 ~v~~t~~nS~llt~D~~Gs 198 (1206)
T KOG2079|consen 180 FVGRTSQNSKLLTSDTGGS 198 (1206)
T ss_pred EEEEeCCCcEEEEccCCCc
Confidence 4455555555666666664
No 374
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=96.39 E-value=0.44 Score=39.26 Aligned_cols=112 Identities=13% Similarity=0.195 Sum_probs=65.6
Q ss_pred EEEEEEcCCCCCEEEEEeCCC----eEEEEECCCCeeeeeeeecCCeeEEEECCCCCeEEEEcCCC-----------cEE
Q 026765 69 VDQLCWDPKHADLIATASGDK----TVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRDD-----------ELT 133 (233)
Q Consensus 69 v~~~~~~~~~~~~l~sg~~d~----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~-----------~i~ 133 (233)
+....++|++..++++-+..| .+++.|+.+++.............+.|.++++.++....+. .+.
T Consensus 126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~v~ 205 (414)
T PF02897_consen 126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENPKFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQVY 205 (414)
T ss_dssp EEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEEESEEEEECTTSSEEEEEECSTTTSS-CCGCCEEEE
T ss_pred eeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCcccccccceEEEeCCCCEEEEEEeCcccccccCCCCcEEE
Confidence 345788998766665544444 48999999987654321111112399999988876554332 266
Q ss_pred EEEcCCCee----eeeeecCce-eeEEEECCCCCEEEEEeCC----CeEEEEecCC
Q 026765 134 ILDVRKFKP----IHRRKFGYE-VNEIAWNMTGEMFFLTTGN----GTVEVLTYPS 180 (233)
Q Consensus 134 i~d~~~~~~----~~~~~~~~~-~~~~~~~~~~~~~~~~~~~----~~v~~~~~~~ 180 (233)
.|++.+... +........ ...+..+++++++++.... ..+.+.+...
T Consensus 206 ~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~ 261 (414)
T PF02897_consen 206 RHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDD 261 (414)
T ss_dssp EEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCC
T ss_pred EEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccc
Confidence 677665432 222222222 4567889999998765432 3456666654
No 375
>PHA02790 Kelch-like protein; Provisional
Probab=96.26 E-value=0.37 Score=40.63 Aligned_cols=140 Identities=11% Similarity=0.077 Sum_probs=69.0
Q ss_pred CCEEEEEeCC--CeEEEEECCCCeeeeeeeecCCeeE-EEECCCCCeEEEEcCCC---cEEEEEcCCCeeeeeeecCcee
Q 026765 79 ADLIATASGD--KTVRLWDARSGKCSQQAELSGENIN-ITYKPDGTHIAVGNRDD---ELTILDVRKFKPIHRRKFGYEV 152 (233)
Q Consensus 79 ~~~l~sg~~d--~~i~iwd~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~d~---~i~i~d~~~~~~~~~~~~~~~~ 152 (233)
+.+.+.||.+ ..+..||..+++............. ....-+++..+.|+.++ .+..||.++.+.........+.
T Consensus 319 ~~iYviGG~~~~~sve~ydp~~n~W~~~~~l~~~r~~~~~~~~~g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r 398 (480)
T PHA02790 319 NKLYVVGGLPNPTSVERWFHGDAAWVNMPSLLKPRCNPAVASINNVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPH 398 (480)
T ss_pred CEEEEECCcCCCCceEEEECCCCeEEECCCCCCCCcccEEEEECCEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCcc
Confidence 4566777754 3577888776654332222211111 11123566667777553 4677888765543322221111
Q ss_pred -eEEEECCCCCEEEEEeCCCeEEEEecCCc--eeeeEEeeecCceeEEEECCCCCEEEEeeCC-----CcEEEEecCCc
Q 026765 153 -NEIAWNMTGEMFFLTTGNGTVEVLTYPSL--RPLDTVVAHTAGCYCIAIDPMGRYFAVGSAD-----SLVSLWDISEM 223 (233)
Q Consensus 153 -~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~~~~~~~~~~v~~i~~~p~~~~las~s~d-----g~v~iwd~~~~ 223 (233)
.......+++..+.|+ .+.+||..+. +.+..+....... +++. .+++..+.|+.+ ..|..||..+.
T Consensus 399 ~~~~~~~~~~~IYv~GG---~~e~ydp~~~~W~~~~~m~~~r~~~-~~~v-~~~~IYviGG~~~~~~~~~ve~Yd~~~~ 472 (480)
T PHA02790 399 YKSCALVFGRRLFLVGR---NAEFYCESSNTWTLIDDPIYPRDNP-ELII-VDNKLLLIGGFYRGSYIDTIEVYNNRTY 472 (480)
T ss_pred ccceEEEECCEEEEECC---ceEEecCCCCcEeEcCCCCCCcccc-EEEE-ECCEEEEECCcCCCcccceEEEEECCCC
Confidence 1112223566666663 4677776542 2222221111111 2222 356788888865 35777777654
No 376
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=96.18 E-value=0.47 Score=41.00 Aligned_cols=97 Identities=15% Similarity=0.314 Sum_probs=62.8
Q ss_pred CEEEEEeCCCeEEEEECCCCeeeeeeee--cCCeeEEEE--CCCCCeEEEEcCCCcEEEEEcC---------CCeeeeee
Q 026765 80 DLIATASGDKTVRLWDARSGKCSQQAEL--SGENINITY--KPDGTHIAVGNRDDELTILDVR---------KFKPIHRR 146 (233)
Q Consensus 80 ~~l~sg~~d~~i~iwd~~~~~~~~~~~~--~~~~~~~~~--~~~~~~l~~~~~d~~i~i~d~~---------~~~~~~~~ 146 (233)
+..+.-+....+.|||.+.+.......+ .+.+..+.| .|++..+++.+....|.+|--. +..++...
T Consensus 42 k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~~~p~w~~i~~i 121 (631)
T PF12234_consen 42 KIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTNKGPSWAPIRKI 121 (631)
T ss_pred cEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhcCCcccceeEEE
Confidence 3434444456799999999886655555 566666766 6889999888888888887531 11222222
Q ss_pred e----cCceeeEEEECCCCCEEEEEeCCCeEEEEec
Q 026765 147 K----FGYEVNEIAWNMTGEMFFLTTGNGTVEVLTY 178 (233)
Q Consensus 147 ~----~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 178 (233)
. ..+++....|-++|.+++..+ +.+.+++-
T Consensus 122 ~i~~~T~h~Igds~Wl~~G~LvV~sG--Nqlfv~dk 155 (631)
T PF12234_consen 122 DISSHTPHPIGDSIWLKDGTLVVGSG--NQLFVFDK 155 (631)
T ss_pred EeecCCCCCccceeEecCCeEEEEeC--CEEEEECC
Confidence 1 236788899988886555443 35666653
No 377
>PHA03098 kelch-like protein; Provisional
Probab=96.10 E-value=0.34 Score=41.37 Aligned_cols=142 Identities=11% Similarity=0.109 Sum_probs=69.0
Q ss_pred CCEEEEEeCC-----CeEEEEECCCCeeeeeeeecCC--eeEEEECCCCCeEEEEcCC------CcEEEEEcCCCeeeee
Q 026765 79 ADLIATASGD-----KTVRLWDARSGKCSQQAELSGE--NINITYKPDGTHIAVGNRD------DELTILDVRKFKPIHR 145 (233)
Q Consensus 79 ~~~l~sg~~d-----~~i~iwd~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~d------~~i~i~d~~~~~~~~~ 145 (233)
+.+++.||.+ ..+..||..+.+.........+ ..+++. -+++..+.|+.+ ..+..||+.+.+....
T Consensus 343 ~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~~~lp~~r~~~~~~~-~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~ 421 (534)
T PHA03098 343 NRIYVIGGIYNSISLNTVESWKPGESKWREEPPLIFPRYNPCVVN-VNNLIYVIGGISKNDELLKTVECFSLNTNKWSKG 421 (534)
T ss_pred CEEEEEeCCCCCEecceEEEEcCCCCceeeCCCcCcCCccceEEE-ECCEEEEECCcCCCCcccceEEEEeCCCCeeeec
Confidence 4577777765 3466788877654432222111 112222 345566666632 3477888876544322
Q ss_pred eecCcee-eEEEECCCCCEEEEEeCC--------CeEEEEecCCc--eeeeEEeeecCceeEEEECCCCCEEEEeeCC--
Q 026765 146 RKFGYEV-NEIAWNMTGEMFFLTTGN--------GTVEVLTYPSL--RPLDTVVAHTAGCYCIAIDPMGRYFAVGSAD-- 212 (233)
Q Consensus 146 ~~~~~~~-~~~~~~~~~~~~~~~~~~--------~~v~~~~~~~~--~~~~~~~~~~~~v~~i~~~p~~~~las~s~d-- 212 (233)
.....+. ...+...+++.++.|+.+ ..+.+||..+. ..+..+.........+.+ +++.++.|+.+
T Consensus 422 ~~~p~~r~~~~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~r~~~~~~~~--~~~iyv~GG~~~~ 499 (534)
T PHA03098 422 SPLPISHYGGCAIYHDGKIYVIGGISYIDNIKVYNIVESYNPVTNKWTELSSLNFPRINASLCIF--NNKIYVVGGDKYE 499 (534)
T ss_pred CCCCccccCceEEEECCEEEEECCccCCCCCcccceEEEecCCCCceeeCCCCCcccccceEEEE--CCEEEEEcCCcCC
Confidence 1111110 111122355666666542 23677776543 222211111111112223 56777777764
Q ss_pred ---CcEEEEecCCc
Q 026765 213 ---SLVSLWDISEM 223 (233)
Q Consensus 213 ---g~v~iwd~~~~ 223 (233)
..|.+||..+.
T Consensus 500 ~~~~~v~~yd~~~~ 513 (534)
T PHA03098 500 YYINEIEVYDDKTN 513 (534)
T ss_pred cccceeEEEeCCCC
Confidence 46888888765
No 378
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=96.07 E-value=0.047 Score=28.98 Aligned_cols=33 Identities=30% Similarity=0.384 Sum_probs=27.7
Q ss_pred CcEEEEEEcCCCC--CEEEEEeCCCeEEEEECCCC
Q 026765 67 DSVDQLCWDPKHA--DLIATASGDKTVRLWDARSG 99 (233)
Q Consensus 67 ~~v~~~~~~~~~~--~~l~sg~~d~~i~iwd~~~~ 99 (233)
++|.++.|+|... .+|+.+-.-+.|.|+|++++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~~ 35 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRSN 35 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEcccC
Confidence 3688999998766 78888888899999999853
No 379
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=96.06 E-value=0.031 Score=41.26 Aligned_cols=104 Identities=15% Similarity=0.186 Sum_probs=54.6
Q ss_pred CCEEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeeeeecC--
Q 026765 32 GTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSG-- 109 (233)
Q Consensus 32 ~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~-- 109 (233)
+..++.|..||.|.+|..+..+. .... ...-...|.++--..+.+.+..++++|+.|+.|++.-.+.......+.
T Consensus 70 ~~~~~vG~~dg~v~~~n~n~~g~--~~d~-~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~g~h~~~ 146 (238)
T KOG2444|consen 70 SAKLMVGTSDGAVYVFNWNLEGA--HSDR-VCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYVGQHNFE 146 (238)
T ss_pred CceEEeecccceEEEecCCccch--HHHh-hhcccccceeccccccccceeEEeccCCceeeeccccCceeeeeccccCC
Confidence 45678888999999998753221 1100 111112333222222333478899999999999998766544333222
Q ss_pred CeeEEEECCCCCeEEEE--cCCCcEEEEEcC
Q 026765 110 ENINITYKPDGTHIAVG--NRDDELTILDVR 138 (233)
Q Consensus 110 ~~~~~~~~~~~~~l~~~--~~d~~i~i~d~~ 138 (233)
+.........++.+... +.|..++.|++.
T Consensus 147 ~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve 177 (238)
T KOG2444|consen 147 SGEELIVVGSDEFLKIADTSHDRVLKKWNVE 177 (238)
T ss_pred CcceeEEecCCceEEeeccccchhhhhcchh
Confidence 11122222333344443 444455555554
No 380
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=96.06 E-value=0.34 Score=41.78 Aligned_cols=186 Identities=17% Similarity=0.218 Sum_probs=95.5
Q ss_pred cCCCEEEEEeCCC------CEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCC------CeEEEEECC
Q 026765 30 CTGTKLASGSVDQ------TARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGD------KTVRLWDAR 97 (233)
Q Consensus 30 ~~~~~l~s~~~D~------~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d------~~i~iwd~~ 97 (233)
..+..++.||.++ +|..+|...+ .+.....++ +...-.+++... +.+.++||.| ..+-.||.+
T Consensus 283 ~~~~l~~vGG~~~~~~~~~~ve~yd~~~~--~w~~~a~m~-~~r~~~~~~~~~--~~lYv~GG~~~~~~~l~~ve~YD~~ 357 (571)
T KOG4441|consen 283 VSGKLVAVGGYNRQGQSLRSVECYDPKTN--EWSSLAPMP-SPRCRVGVAVLN--GKLYVVGGYDSGSDRLSSVERYDPR 357 (571)
T ss_pred CCCeEEEECCCCCCCcccceeEEecCCcC--cEeecCCCC-cccccccEEEEC--CEEEEEccccCCCcccceEEEecCC
Confidence 3456677888773 5677776542 122211222 233344455543 3677899998 355678888
Q ss_pred CCeeeeeeeecCCe--eEEEECCCCCeEEEEcCCCc-----EEEEEcCCCeeeeeeecCce-eeEEEECCCCCEEEEEeC
Q 026765 98 SGKCSQQAELSGEN--INITYKPDGTHIAVGNRDDE-----LTILDVRKFKPIHRRKFGYE-VNEIAWNMTGEMFFLTTG 169 (233)
Q Consensus 98 ~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~~d~~-----i~i~d~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 169 (233)
..+........... ..++. -+|...++|+.||. +..||.++.+....-.+... -..-....+|+..++|+.
T Consensus 358 ~~~W~~~a~M~~~R~~~~v~~-l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~r~~~gv~~~~g~iYi~GG~ 436 (571)
T KOG4441|consen 358 TNQWTPVAPMNTKRSDFGVAV-LDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTRRSGHGVAVLGGKLYIIGGG 436 (571)
T ss_pred CCceeccCCccCccccceeEE-ECCEEEEEeccccccccccEEEecCCCCcccccCCCCcceeeeEEEEECCEEEEEcCc
Confidence 77654422222211 12222 26677888988863 66788766443322222111 111122346777788775
Q ss_pred CC------eEEEEecCCc--eeeeEEeeecCceeEEEECCCCCEEEEeeCCCc-----EEEEecCCc
Q 026765 170 NG------TVEVLTYPSL--RPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSL-----VSLWDISEM 223 (233)
Q Consensus 170 ~~------~v~~~~~~~~--~~~~~~~~~~~~v~~i~~~p~~~~las~s~dg~-----v~iwd~~~~ 223 (233)
++ .+..||..+. +.+..+..-... ..++ .-++.+++.|+.|+. |..||..+.
T Consensus 437 ~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~-~g~a-~~~~~iYvvGG~~~~~~~~~VE~ydp~~~ 501 (571)
T KOG4441|consen 437 DGSSNCLNSVECYDPETNTWTLIAPMNTRRSG-FGVA-VLNGKIYVVGGFDGTSALSSVERYDPETN 501 (571)
T ss_pred CCCccccceEEEEcCCCCceeecCCccccccc-ceEE-EECCEEEEECCccCCCccceEEEEcCCCC
Confidence 43 4566665432 222111111111 1122 235678888887763 666776654
No 381
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=96.06 E-value=0.76 Score=38.87 Aligned_cols=105 Identities=16% Similarity=0.205 Sum_probs=66.8
Q ss_pred EEEEEeCCCeEEEEECCCCeeeeeeeecCCeeEEEECCCCCeEEEE------------------cCCCcEEEEEcCCCee
Q 026765 81 LIATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVG------------------NRDDELTILDVRKFKP 142 (233)
Q Consensus 81 ~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~------------------~~d~~i~i~d~~~~~~ 142 (233)
+++.++.+|.+...|.++++..-...... ..++.+| ..+..+ ..++.+.-+|+.+++.
T Consensus 303 ~V~~g~~~G~l~ald~~tG~~~W~~~~~~--~~~~~~~--~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~AlD~~tG~~ 378 (488)
T cd00216 303 AIVHAPKNGFFYVLDRTTGKLISARPEVE--QPMAYDP--GLVYLGAFHIPLGLPPQKKKRCKKPGKGGLAALDPKTGKV 378 (488)
T ss_pred EEEEECCCceEEEEECCCCcEeeEeEeec--cccccCC--ceEEEccccccccCcccccCCCCCCCceEEEEEeCCCCcE
Confidence 56788899999999999998665443321 1123333 222222 2356788888888877
Q ss_pred eeeeecC---------ceeeEEEECCCCCEEEEEeCCCeEEEEecCCceeeeEEee
Q 026765 143 IHRRKFG---------YEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVA 189 (233)
Q Consensus 143 ~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 189 (233)
+.+.... .+...-.....++.+++++.+|.++.+|.++++.+-++..
T Consensus 379 ~W~~~~~~~~~~~~~g~~~~~~~~~~~g~~v~~g~~dG~l~ald~~tG~~lW~~~~ 434 (488)
T cd00216 379 VWEKREGTIRDSWNIGFPHWGGSLATAGNLVFAGAADGYFRAFDATTGKELWKFRT 434 (488)
T ss_pred eeEeeCCccccccccCCcccCcceEecCCeEEEECCCCeEEEEECCCCceeeEEEC
Confidence 6655543 1111001112567888889999999999999988776553
No 382
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=96.06 E-value=0.54 Score=37.10 Aligned_cols=194 Identities=12% Similarity=0.035 Sum_probs=102.3
Q ss_pred EECcCCCEE-EEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeee-
Q 026765 27 AWNCTGTKL-ASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQ- 104 (233)
Q Consensus 27 ~~~~~~~~l-~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~- 104 (233)
.|.++...| .+--..+.|.-|+.... ...... +...+.++..-..+ ..|+++ . .-+.+++...+.....
T Consensus 31 ~w~~~~~~L~w~DI~~~~i~r~~~~~g---~~~~~~---~p~~~~~~~~~d~~-g~Lv~~-~-~g~~~~~~~~~~~~t~~ 101 (307)
T COG3386 31 VWDPDRGALLWVDILGGRIHRLDPETG---KKRVFP---SPGGFSSGALIDAG-GRLIAC-E-HGVRLLDPDTGGKITLL 101 (307)
T ss_pred cCcCCCCEEEEEeCCCCeEEEecCCcC---ceEEEE---CCCCcccceeecCC-CeEEEE-c-cccEEEeccCCceeEEe
Confidence 466766644 34345677777776421 222222 22333333332233 344443 2 3466667655544221
Q ss_pred eeec-C----CeeEEEECCCCCeEEEEcC-----C----CcEEEEEcC-CCeeeeeeec-CceeeEEEECCCCCEEEEEe
Q 026765 105 AELS-G----ENINITYKPDGTHIAVGNR-----D----DELTILDVR-KFKPIHRRKF-GYEVNEIAWNMTGEMFFLTT 168 (233)
Q Consensus 105 ~~~~-~----~~~~~~~~~~~~~l~~~~~-----d----~~i~i~d~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 168 (233)
.... + ....+...|+|.+.+.... . ..-.+|-+. ....+..... -...+.++|+|+++.+..+.
T Consensus 102 ~~~~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~g~~~~l~~~~~~~~NGla~SpDg~tly~aD 181 (307)
T COG3386 102 AEPEDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPDGGVVRLLDDDLTIPNGLAFSPDGKTLYVAD 181 (307)
T ss_pred ccccCCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCCCCEEEeecCcEEecCceEECCCCCEEEEEe
Confidence 1111 1 1234777888887665444 1 112344433 2222222221 23468899999998887775
Q ss_pred C-CCeEEEEecCC--ceeee-----EEeeecCceeEEEECCCCCEEEEeeCCC-cEEEEecCCcEEEEeee
Q 026765 169 G-NGTVEVLTYPS--LRPLD-----TVVAHTAGCYCIAIDPMGRYFAVGSADS-LVSLWDISEMLCVRTFT 230 (233)
Q Consensus 169 ~-~~~v~~~~~~~--~~~~~-----~~~~~~~~v~~i~~~p~~~~las~s~dg-~v~iwd~~~~~~i~~~~ 230 (233)
. .+.+..+++.. +.... .+....+..-.++...+|.+.+++-.+| .|.+|+.+ ++.+.++.
T Consensus 182 T~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~g~~v~~~~pd-G~l~~~i~ 251 (307)
T COG3386 182 TPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADGNLWVAAVWGGGRVVRFNPD-GKLLGEIK 251 (307)
T ss_pred CCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCCCEEEecccCCceEEEECCC-CcEEEEEE
Confidence 4 58888887752 11111 1111223445677888888886555554 89999999 87777653
No 383
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=96.03 E-value=0.48 Score=36.26 Aligned_cols=157 Identities=14% Similarity=0.092 Sum_probs=98.0
Q ss_pred cEEEEEEcCCCCCEEEEEeCCC--eEEEEECCCCeeeeeeeecCCee--EEEECCCCCeEEEEcCCCcEEEEEcCCCeee
Q 026765 68 SVDQLCWDPKHADLIATASGDK--TVRLWDARSGKCSQQAELSGENI--NITYKPDGTHIAVGNRDDELTILDVRKFKPI 143 (233)
Q Consensus 68 ~v~~~~~~~~~~~~l~sg~~d~--~i~iwd~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~ 143 (233)
-...+.|..+ +.++-|.+.-| .|+.+|+.+++......+....+ .+.... ++.....=.++...+||..+.+.+
T Consensus 46 FTQGL~~~~~-g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~-d~l~qLTWk~~~~f~yd~~tl~~~ 123 (264)
T PF05096_consen 46 FTQGLEFLDD-GTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITILG-DKLYQLTWKEGTGFVYDPNTLKKI 123 (264)
T ss_dssp EEEEEEEEET-TEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEET-TEEEEEESSSSEEEEEETTTTEEE
T ss_pred cCccEEecCC-CEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEEC-CEEEEEEecCCeEEEEccccceEE
Confidence 3557777444 35666766655 68899999998776666554433 244332 234445556788999999999888
Q ss_pred eeeecCceeeEEEECCCCCEEEEEeCCCeEEEEecCCceeeeEEeeecC-----ceeEEEECCCCCEEEEeeCCCcEEEE
Q 026765 144 HRRKFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAHTA-----GCYCIAIDPMGRYFAVGSADSLVSLW 218 (233)
Q Consensus 144 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~-----~v~~i~~~p~~~~las~s~dg~v~iw 218 (233)
.......+-..++ .+++.++.+.+...+.++|..+.+..+.+..... .++.+.+- +|...|=-=....|..-
T Consensus 124 ~~~~y~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i-~G~IyANVW~td~I~~I 200 (264)
T PF05096_consen 124 GTFPYPGEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI-NGKIYANVWQTDRIVRI 200 (264)
T ss_dssp EEEE-SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE-TTEEEEEETTSSEEEEE
T ss_pred EEEecCCcceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE-cCEEEEEeCCCCeEEEE
Confidence 7776655555555 5788999999999999999888877766654321 34455554 45555544455667777
Q ss_pred ecCCcEEEEee
Q 026765 219 DISEMLCVRTF 229 (233)
Q Consensus 219 d~~~~~~i~~~ 229 (233)
|..+|.++..+
T Consensus 201 dp~tG~V~~~i 211 (264)
T PF05096_consen 201 DPETGKVVGWI 211 (264)
T ss_dssp ETTT-BEEEEE
T ss_pred eCCCCeEEEEE
Confidence 88888776554
No 384
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=96.03 E-value=0.74 Score=39.85 Aligned_cols=101 Identities=18% Similarity=0.143 Sum_probs=66.0
Q ss_pred CCCCeEEEEcCCCcEEEEEcCCCeeeeeeec--CceeeEEEE--CCCCCEEEEEeCCCeEEEEecC---------Cceee
Q 026765 118 PDGTHIAVGNRDDELTILDVRKFKPIHRRKF--GYEVNEIAW--NMTGEMFFLTTGNGTVEVLTYP---------SLRPL 184 (233)
Q Consensus 118 ~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~--~~~~~~~~~--~~~~~~~~~~~~~~~v~~~~~~---------~~~~~ 184 (233)
.-++..++......+.|||.+.........+ ...|..+.| .|+++.+++.+-...|.+|.-. ...++
T Consensus 39 s~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l~~Q~R~dy~~~~p~w~~i 118 (631)
T PF12234_consen 39 SIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLLYTQLRYDYTNKGPSWAPI 118 (631)
T ss_pred ccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCCCEEEEEEcCcEEEEEEccchhhhcCCccccee
Confidence 3333333444446799999988775544444 557888888 4778888888888888888531 22334
Q ss_pred eEE--eeec-CceeEEEECCCCCEEEEeeCCCcEEEEec
Q 026765 185 DTV--VAHT-AGCYCIAIDPMGRYFAVGSADSLVSLWDI 220 (233)
Q Consensus 185 ~~~--~~~~-~~v~~i~~~p~~~~las~s~dg~v~iwd~ 220 (233)
+.+ ..|+ .+|.+..|.++|..++.++ +.+.|+|-
T Consensus 119 ~~i~i~~~T~h~Igds~Wl~~G~LvV~sG--Nqlfv~dk 155 (631)
T PF12234_consen 119 RKIDISSHTPHPIGDSIWLKDGTLVVGSG--NQLFVFDK 155 (631)
T ss_pred EEEEeecCCCCCccceeEecCCeEEEEeC--CEEEEECC
Confidence 443 2344 5788899999987766443 55777764
No 385
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=95.87 E-value=0.57 Score=35.87 Aligned_cols=146 Identities=14% Similarity=0.170 Sum_probs=81.5
Q ss_pred cEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeeeeecCCeeEEEECCCCCeEEEEcCCCcEEEEE-cCCCe--eee
Q 026765 68 SVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRDDELTILD-VRKFK--PIH 144 (233)
Q Consensus 68 ~v~~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d-~~~~~--~~~ 144 (233)
.+.+.+++++++.+.+....++.-.+|-...+..............-.|++++...+....+....++. ..... .+.
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~~~~~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~~~~ 104 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPVRPVLTGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGEPVE 104 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcceeeccCCccccccccCCCCEEEEEcCCCceEEEEecCCCcceeEE
Confidence 577888999876655544333333444333333222222222344567888977666666555555553 22221 111
Q ss_pred ee-e-cCceeeEEEECCCCCEEEEEe---CCCeEEEEecC---Cc------eeeeEEeeecCceeEEEECCCCCEEEEee
Q 026765 145 RR-K-FGYEVNEIAWNMTGEMFFLTT---GNGTVEVLTYP---SL------RPLDTVVAHTAGCYCIAIDPMGRYFAVGS 210 (233)
Q Consensus 145 ~~-~-~~~~~~~~~~~~~~~~~~~~~---~~~~v~~~~~~---~~------~~~~~~~~~~~~v~~i~~~p~~~~las~s 210 (233)
.. . ....|..+.++|||..++... .++.+.+--.. .+ .+..........+..++|.+++.+++.+.
T Consensus 105 v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~L~V~~~ 184 (253)
T PF10647_consen 105 VDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDSTLVVLGR 184 (253)
T ss_pred ecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCCEEEEEeC
Confidence 11 1 112799999999999988766 34666665432 22 11111112345788999999998877666
Q ss_pred CCC
Q 026765 211 ADS 213 (233)
Q Consensus 211 ~dg 213 (233)
..+
T Consensus 185 ~~~ 187 (253)
T PF10647_consen 185 SAG 187 (253)
T ss_pred CCC
Confidence 443
No 386
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=95.85 E-value=0.83 Score=37.59 Aligned_cols=41 Identities=27% Similarity=0.324 Sum_probs=34.1
Q ss_pred CceeEEEECCCCCEEEEeeCCCcEEEEecCCcEEEEeeecC
Q 026765 192 AGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFTKL 232 (233)
Q Consensus 192 ~~v~~i~~~p~~~~las~s~dg~v~iwd~~~~~~i~~~~~~ 232 (233)
..+.+|..+|.+++.|+...=|.|.++|+..+..++-++++
T Consensus 308 R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGY 348 (415)
T PF14655_consen 308 REGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGY 348 (415)
T ss_pred ceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccC
Confidence 34678999999988888777799999999999888876654
No 387
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=95.78 E-value=0.63 Score=35.63 Aligned_cols=180 Identities=17% Similarity=0.180 Sum_probs=103.7
Q ss_pred cEEEEEECcCCCEEEEEeCCC--CEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCCeEEEEECCCC
Q 026765 22 KVHSVAWNCTGTKLASGSVDQ--TARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSG 99 (233)
Q Consensus 22 ~V~~~~~~~~~~~l~s~~~D~--~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~iwd~~~~ 99 (233)
..-.+.|..+|.++-|.|.-| .|+.+|+.+.. ......++. .----.++.. +.++..---.++...+||..+-
T Consensus 46 FTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~--~~~~~~l~~-~~FgEGit~~--~d~l~qLTWk~~~~f~yd~~tl 120 (264)
T PF05096_consen 46 FTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGK--VLQSVPLPP-RYFGEGITIL--GDKLYQLTWKEGTGFVYDPNTL 120 (264)
T ss_dssp EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSS--EEEEEE-TT-T--EEEEEEE--TTEEEEEESSSSEEEEEETTTT
T ss_pred cCccEEecCCCEEEEeCCCCCcEEEEEEECCCCc--EEEEEECCc-cccceeEEEE--CCEEEEEEecCCeEEEEccccc
Confidence 345778877888888888666 67777776422 222233322 1111223332 2234444466788899999988
Q ss_pred eeeeeeeecCCeeEEEECCCCCeEEEEcCCCcEEEEEcCCCeeeeeeec---Cc---eeeEEEECCCCCEEEEEeCCCeE
Q 026765 100 KCSQQAELSGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKF---GY---EVNEIAWNMTGEMFFLTTGNGTV 173 (233)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~---~~---~~~~~~~~~~~~~~~~~~~~~~v 173 (233)
+...++...++...++ .++..|+....+..+..+|..+.+....... +. .++.+.+- +|...+=.=....|
T Consensus 121 ~~~~~~~y~~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~~~i~V~~~g~pv~~LNELE~i-~G~IyANVW~td~I 197 (264)
T PF05096_consen 121 KKIGTFPYPGEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEVRTIQVTDNGRPVSNLNELEYI-NGKIYANVWQTDRI 197 (264)
T ss_dssp EEEEEEE-SSS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEEEEEE-EETTEE---EEEEEEE-TTEEEEEETTSSEE
T ss_pred eEEEEEecCCcceEEE--cCCCEEEEECCccceEEECCcccceEEEEEEEECCEECCCcEeEEEE-cCEEEEEeCCCCeE
Confidence 8888888778888777 4566777777778899999888776655443 22 24555553 44433333345667
Q ss_pred EEEecCCceeeeEEee---------------ecCceeEEEECCCCCE-EEEe
Q 026765 174 EVLTYPSLRPLDTVVA---------------HTAGCYCIAIDPMGRY-FAVG 209 (233)
Q Consensus 174 ~~~~~~~~~~~~~~~~---------------~~~~v~~i~~~p~~~~-las~ 209 (233)
..+|..+++....+.. ...-.+.||++|.... ++||
T Consensus 198 ~~Idp~tG~V~~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~~~~~l~vTG 249 (264)
T PF05096_consen 198 VRIDPETGKVVGWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDPETDRLFVTG 249 (264)
T ss_dssp EEEETTT-BEEEEEE-HHHHHHHTSTTST--TTS-EEEEEEETTTTEEEEEE
T ss_pred EEEeCCCCeEEEEEEhhHhhhcccccccccccCCeeEeEeEeCCCCEEEEEe
Confidence 7777777766554421 0233689999987654 5565
No 388
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=95.78 E-value=0.64 Score=40.10 Aligned_cols=142 Identities=16% Similarity=0.176 Sum_probs=72.9
Q ss_pred CCEEEEEeCCCe-----EEEEECCCCeeeeeeeecCCeeEEE-ECCCCCeEEEEcCCC------cEEEEEcCCCeeeeee
Q 026765 79 ADLIATASGDKT-----VRLWDARSGKCSQQAELSGENINIT-YKPDGTHIAVGNRDD------ELTILDVRKFKPIHRR 146 (233)
Q Consensus 79 ~~~l~sg~~d~~-----i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~d~------~i~i~d~~~~~~~~~~ 146 (233)
+.+.+.||.||. +-.||..+.+..............+ ..-+|...++|+.++ .+..||..+.......
T Consensus 381 g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m~~~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~ 460 (571)
T KOG4441|consen 381 GKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPMLTRRSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIA 460 (571)
T ss_pred CEEEEEeccccccccccEEEecCCCCcccccCCCCcceeeeEEEEECCEEEEEcCcCCCccccceEEEEcCCCCceeecC
Confidence 467788988864 5667777665433222211111111 123666777787554 4667887765443322
Q ss_pred ecCc--eeeEEEECCCCCEEEEEeCCC-----eEEEEecCCce--eeeEEeeecCceeEEEECCCCCEEEEeeCCC----
Q 026765 147 KFGY--EVNEIAWNMTGEMFFLTTGNG-----TVEVLTYPSLR--PLDTVVAHTAGCYCIAIDPMGRYFAVGSADS---- 213 (233)
Q Consensus 147 ~~~~--~~~~~~~~~~~~~~~~~~~~~-----~v~~~~~~~~~--~~~~~~~~~~~v~~i~~~p~~~~las~s~dg---- 213 (233)
.+.. .-..++ .-++..+++|+.++ ++..||..+.+ .+..+......+-.+.+ +++..+.|+.||
T Consensus 461 ~M~~~R~~~g~a-~~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~~rs~~g~~~~--~~~ly~vGG~~~~~~l 537 (571)
T KOG4441|consen 461 PMNTRRSGFGVA-VLNGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPMTSPRSAVGVVVL--GGKLYAVGGFDGNNNL 537 (571)
T ss_pred CcccccccceEE-EECCEEEEECCccCCCccceEEEEcCCCCceeEcccCccccccccEEEE--CCEEEEEecccCcccc
Confidence 2211 111111 23667777777665 36667765432 22111112222222233 456788888776
Q ss_pred -cEEEEecCCc
Q 026765 214 -LVSLWDISEM 223 (233)
Q Consensus 214 -~v~iwd~~~~ 223 (233)
+|..||..+.
T Consensus 538 ~~ve~ydp~~d 548 (571)
T KOG4441|consen 538 NTVECYDPETD 548 (571)
T ss_pred ceeEEcCCCCC
Confidence 4666766554
No 389
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=95.76 E-value=0.91 Score=38.56 Aligned_cols=149 Identities=11% Similarity=0.202 Sum_probs=83.6
Q ss_pred cEEEEEEcCCCCCEEEEEe--CCCeEEEEECCCCeeeeeeeecCCeeEEEECCCC----CeEEEEcCCCcEEEEEcCC--
Q 026765 68 SVDQLCWDPKHADLIATAS--GDKTVRLWDARSGKCSQQAELSGENINITYKPDG----THIAVGNRDDELTILDVRK-- 139 (233)
Q Consensus 68 ~v~~~~~~~~~~~~l~sg~--~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~----~~l~~~~~d~~i~i~d~~~-- 139 (233)
++..++|. +|..++++.- .+|.+++=| .+.+..+ ..+..+.|.|-+ .-+++....+.+.+|-+..
T Consensus 21 PvhGlaWT-DGkqVvLT~L~l~~gE~kfGd---s~viGqF---EhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~ 93 (671)
T PF15390_consen 21 PVHGLAWT-DGKQVVLTDLQLHNGEPKFGD---SKVIGQF---EHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPST 93 (671)
T ss_pred cccceEec-CCCEEEEEeeeeeCCccccCC---ccEeecc---ceeeeeeecCcccCCCCceEEEeccceEEEEEeccCc
Confidence 67788886 4555555543 223333221 1122222 235568887742 2344555566799998742
Q ss_pred ---Ceeeeee--ec--Cce--eeEEEECCCCCEEEEEeCCCeEEEEecC-CceeeeEEeeecCceeEEEECCCCCEEEEe
Q 026765 140 ---FKPIHRR--KF--GYE--VNEIAWNMTGEMFFLTTGNGTVEVLTYP-SLRPLDTVVAHTAGCYCIAIDPMGRYFAVG 209 (233)
Q Consensus 140 ---~~~~~~~--~~--~~~--~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~~~~~~~~~~v~~i~~~p~~~~las~ 209 (233)
.+.+... .. ..+ ...+.|||....+++-.....-.+++.. +...++.=....+.|.|..|.+||+.|+.+
T Consensus 94 ~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~srVkaDi~~~G~IhCACWT~DG~RLVVA 173 (671)
T PF15390_consen 94 TERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSSRVKADIKTSGLIHCACWTKDGQRLVVA 173 (671)
T ss_pred cccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEeeeeeeCCceEEEeccCCceEEEEEecCcCCEEEEE
Confidence 2222111 11 112 3467899999988887776655555543 222222222345678999999999987654
Q ss_pred e-CCCcEEEEecCCc
Q 026765 210 S-ADSLVSLWDISEM 223 (233)
Q Consensus 210 s-~dg~v~iwd~~~~ 223 (233)
- ..=.-+|||-.+.
T Consensus 174 vGSsLHSyiWd~~qK 188 (671)
T PF15390_consen 174 VGSSLHSYIWDSAQK 188 (671)
T ss_pred eCCeEEEEEecCchh
Confidence 3 3345789986543
No 390
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=95.55 E-value=1.3 Score=37.81 Aligned_cols=190 Identities=13% Similarity=0.096 Sum_probs=103.5
Q ss_pred CCEEEEEeCCCCEEEEecccCCCCceeeEEEecCcC--cE-------EEEEEcCCCCCEEEEEeCCCeEEEEECCCCeee
Q 026765 32 GTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHAD--SV-------DQLCWDPKHADLIATASGDKTVRLWDARSGKCS 102 (233)
Q Consensus 32 ~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~--~v-------~~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~ 102 (233)
+..++.++.++.|.-.|..+.. .+.......... .. ..+++. + ..++.++.|+.+.-.|..+++..
T Consensus 69 ~g~vyv~s~~g~v~AlDa~TGk--~lW~~~~~~~~~~~~~~~~~~~~rg~av~--~-~~v~v~t~dg~l~ALDa~TGk~~ 143 (527)
T TIGR03075 69 DGVMYVTTSYSRVYALDAKTGK--ELWKYDPKLPDDVIPVMCCDVVNRGVALY--D-GKVFFGTLDARLVALDAKTGKVV 143 (527)
T ss_pred CCEEEEECCCCcEEEEECCCCc--eeeEecCCCCcccccccccccccccceEE--C-CEEEEEcCCCEEEEEECCCCCEE
Confidence 4567777777877777765422 111111111100 00 112222 2 24567788999999999999876
Q ss_pred eeeeecCCe--eEEEECC---CCCeEEEEc------CCCcEEEEEcCCCeeeeeeecCc---------------------
Q 026765 103 QQAELSGEN--INITYKP---DGTHIAVGN------RDDELTILDVRKFKPIHRRKFGY--------------------- 150 (233)
Q Consensus 103 ~~~~~~~~~--~~~~~~~---~~~~l~~~~------~d~~i~i~d~~~~~~~~~~~~~~--------------------- 150 (233)
-........ ..+.-+| ++ .++++. .++.+..+|.++++.+.......
T Consensus 144 W~~~~~~~~~~~~~tssP~v~~g-~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~~p~~~~~~~~~~~~~~~~~~~~t 222 (527)
T TIGR03075 144 WSKKNGDYKAGYTITAAPLVVKG-KVITGISGGEFGVRGYVTAYDAKTGKLVWRRYTVPGDMGYLDKADKPVGGEPGAKT 222 (527)
T ss_pred eecccccccccccccCCcEEECC-EEEEeecccccCCCcEEEEEECCCCceeEeccCcCCCcccccccccccccccccCC
Confidence 544322111 1111111 33 444443 25788888988777654422110
Q ss_pred ------------eeeEEEECCCCCEEEEEeCC-----C-----------eEEEEecCCceeeeEEee--ec-------Cc
Q 026765 151 ------------EVNEIAWNMTGEMFFLTTGN-----G-----------TVEVLTYPSLRPLDTVVA--HT-------AG 193 (233)
Q Consensus 151 ------------~~~~~~~~~~~~~~~~~~~~-----~-----------~v~~~~~~~~~~~~~~~~--~~-------~~ 193 (233)
......+.+..+++..+.++ + .+.-.|.++++..-.+.. |+ ..
T Consensus 223 w~~~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG~~~W~~Q~~~~D~wD~d~~~~ 302 (527)
T TIGR03075 223 WPGDAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTGKIKWHYQTTPHDEWDYDGVNE 302 (527)
T ss_pred CCCCccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccccCCEEEeeeCCCCCCccccCCCC
Confidence 01123555556677776644 1 455566677766544332 22 11
Q ss_pred eeEEEECCCCC---EEEEeeCCCcEEEEecCCcEEEE
Q 026765 194 CYCIAIDPMGR---YFAVGSADSLVSLWDISEMLCVR 227 (233)
Q Consensus 194 v~~i~~~p~~~---~las~s~dg~v~iwd~~~~~~i~ 227 (233)
..-+.+..+|+ .++.+..+|.+.+.|.++|+.+.
T Consensus 303 p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~i~ 339 (527)
T TIGR03075 303 MILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGKLLS 339 (527)
T ss_pred cEEEEeccCCcEEEEEEEeCCCceEEEEECCCCceec
Confidence 12233445665 78899999999999999999873
No 391
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.50 E-value=0.86 Score=35.30 Aligned_cols=159 Identities=13% Similarity=0.250 Sum_probs=99.3
Q ss_pred EecCcCcEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeeeeecC--CeeEEEECCCCCeEEEEcCCCcEEEEEcCC
Q 026765 62 LRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSG--ENINITYKPDGTHIAVGNRDDELTILDVRK 139 (233)
Q Consensus 62 ~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~ 139 (233)
+.|-...+.++.|+|+...++ +-.....-.|+=..+|+..+.....+ ....+.+..++.+.++--.+..+.++.+..
T Consensus 81 i~g~~~nvS~LTynp~~rtLF-av~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n~fvi~dER~~~l~~~~vd~ 159 (316)
T COG3204 81 ILGETANVSSLTYNPDTRTLF-AVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGNQFVIVDERDRALYLFTVDA 159 (316)
T ss_pred cccccccccceeeCCCcceEE-EecCCCceEEEEecCCceEEEecccccCChhHeEEecCCEEEEEehhcceEEEEEEcC
Confidence 345556699999999875554 44455555555455677777665543 334577777777777777788888776644
Q ss_pred Ceeee-----eeec------CceeeEEEECCCCCEEEEEeCCCeEEEEecCCceeeeE---Eeeec-------CceeEEE
Q 026765 140 FKPIH-----RRKF------GYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDT---VVAHT-------AGCYCIA 198 (233)
Q Consensus 140 ~~~~~-----~~~~------~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~---~~~~~-------~~v~~i~ 198 (233)
...+. ..+. +..-..++|.+..+.++.+-+..-+.+|.......-.. ...+. ..|.++.
T Consensus 160 ~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvSgl~ 239 (316)
T COG3204 160 DTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVSGLE 239 (316)
T ss_pred CccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeeccccce
Confidence 32111 1111 23456899999999999998888888887643221100 11111 2355677
Q ss_pred ECCCC-CEEEEeeCCCcEEEEecC
Q 026765 199 IDPMG-RYFAVGSADSLVSLWDIS 221 (233)
Q Consensus 199 ~~p~~-~~las~s~dg~v~iwd~~ 221 (233)
|++.. ..|+.+.+++.+.-.|..
T Consensus 240 ~~~~~~~LLVLS~ESr~l~Evd~~ 263 (316)
T COG3204 240 FNAITNSLLVLSDESRRLLEVDLS 263 (316)
T ss_pred ecCCCCcEEEEecCCceEEEEecC
Confidence 88644 556667677877777765
No 392
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=95.28 E-value=1.6 Score=37.14 Aligned_cols=146 Identities=18% Similarity=0.292 Sum_probs=86.5
Q ss_pred cccEEEEEECcCCCEE-EEEe--CCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCC----CCEEEEEeCCCeEE
Q 026765 20 KKKVHSVAWNCTGTKL-ASGS--VDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKH----ADLIATASGDKTVR 92 (233)
Q Consensus 20 ~~~V~~~~~~~~~~~l-~s~~--~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~----~~~l~sg~~d~~i~ 92 (233)
--+|+.++|. ||+++ +|.- .+|.++.=| .. .-|.-..|..++|.|-+ +.+| +-.-.+.|.
T Consensus 19 iHPvhGlaWT-DGkqVvLT~L~l~~gE~kfGd------s~-----viGqFEhV~GlsW~P~~~~~~paLL-AVQHkkhVt 85 (671)
T PF15390_consen 19 IHPVHGLAWT-DGKQVVLTDLQLHNGEPKFGD------SK-----VIGQFEHVHGLSWAPPCTADTPALL-AVQHKKHVT 85 (671)
T ss_pred hccccceEec-CCCEEEEEeeeeeCCccccCC------cc-----EeeccceeeeeeecCcccCCCCceE-EEeccceEE
Confidence 3478899996 66654 4432 233333211 11 12344578999998853 3455 456778999
Q ss_pred EEECCCC-----ee--eeeeeec----CCeeEEEECCCCCeEEEEcCCCcEEEEEcCCC--eeeeeeecCceeeEEEECC
Q 026765 93 LWDARSG-----KC--SQQAELS----GENINITYKPDGTHIAVGNRDDELTILDVRKF--KPIHRRKFGYEVNEIAWNM 159 (233)
Q Consensus 93 iwd~~~~-----~~--~~~~~~~----~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~--~~~~~~~~~~~~~~~~~~~ 159 (233)
||-+... +. .++.+.. --...+.|+|....+++=.....-.+++++.. +..-.++....|.+.+|.+
T Consensus 86 VWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~srVkaDi~~~G~IhCACWT~ 165 (671)
T PF15390_consen 86 VWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSSRVKADIKTSGLIHCACWTK 165 (671)
T ss_pred EEEeccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEeeeeeeCCceEEEeccCCceEEEEEecC
Confidence 9987522 11 1222221 12345789999888876555544445555432 2222344456789999999
Q ss_pred CCCEEEEEeCC-CeEEEEec
Q 026765 160 TGEMFFLTTGN-GTVEVLTY 178 (233)
Q Consensus 160 ~~~~~~~~~~~-~~v~~~~~ 178 (233)
||+.++++.++ =.-++||-
T Consensus 166 DG~RLVVAvGSsLHSyiWd~ 185 (671)
T PF15390_consen 166 DGQRLVVAVGSSLHSYIWDS 185 (671)
T ss_pred cCCEEEEEeCCeEEEEEecC
Confidence 99999888765 23445553
No 393
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=95.24 E-value=0.16 Score=43.55 Aligned_cols=73 Identities=12% Similarity=0.170 Sum_probs=46.0
Q ss_pred CCCCEEEEEeCCCeEEEEecCC----ceeeeEE--eee--------------------cCceeEEEECC----CCCEEEE
Q 026765 159 MTGEMFFLTTGNGTVEVLTYPS----LRPLDTV--VAH--------------------TAGCYCIAIDP----MGRYFAV 208 (233)
Q Consensus 159 ~~~~~~~~~~~~~~v~~~~~~~----~~~~~~~--~~~--------------------~~~v~~i~~~p----~~~~las 208 (233)
.+...++++..||.+..+.... +...... ..+ ...+..+++++ +..+|++
T Consensus 156 ~~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t 235 (547)
T PF11715_consen 156 DSEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFT 235 (547)
T ss_dssp -SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEE
T ss_pred cCCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEE
Confidence 4667788888888888776643 1111100 000 12345566666 6789999
Q ss_pred eeCCCcEEEEecCCcEEEEeeec
Q 026765 209 GSADSLVSLWDISEMLCVRTFTK 231 (233)
Q Consensus 209 ~s~dg~v~iwd~~~~~~i~~~~~ 231 (233)
-+.|+++|+||+.++.|++++.-
T Consensus 236 l~~D~~LRiW~l~t~~~~~~~~~ 258 (547)
T PF11715_consen 236 LSRDHTLRIWSLETGQCLATIDL 258 (547)
T ss_dssp EETTSEEEEEETTTTCEEEEEET
T ss_pred EeCCCeEEEEECCCCeEEEEecc
Confidence 99999999999999999888753
No 394
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=95.22 E-value=1.2 Score=39.47 Aligned_cols=82 Identities=22% Similarity=0.225 Sum_probs=55.6
Q ss_pred cCceeeEEEECCCCCEEEEEeCCCeEEEEecCCc---------e---eeeEEe--------eecCceeEEEECCCC---C
Q 026765 148 FGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSL---------R---PLDTVV--------AHTAGCYCIAIDPMG---R 204 (233)
Q Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---------~---~~~~~~--------~~~~~v~~i~~~p~~---~ 204 (233)
..++|..+..+++|..+++.+..|-..+.-.+.. + ..+++. .+...|..+.|+|.+ .
T Consensus 83 ~~f~v~~i~~n~~g~~lal~G~~~v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~ 162 (717)
T PF10168_consen 83 PLFEVHQISLNPTGSLLALVGPRGVVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDS 162 (717)
T ss_pred CceeEEEEEECCCCCEEEEEcCCcEEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCC
Confidence 3468999999999999999988765544432211 0 011111 123467789999974 7
Q ss_pred EEEEeeCCCcEEEEecCCc-EEEEee
Q 026765 205 YFAVGSADSLVSLWDISEM-LCVRTF 229 (233)
Q Consensus 205 ~las~s~dg~v~iwd~~~~-~~i~~~ 229 (233)
+|+.=..|+++|+||+.+. .+.+++
T Consensus 163 ~l~vLtsdn~lR~y~~~~~~~p~~v~ 188 (717)
T PF10168_consen 163 HLVVLTSDNTLRLYDISDPQHPWQVL 188 (717)
T ss_pred eEEEEecCCEEEEEecCCCCCCeEEE
Confidence 9999999999999999753 344433
No 395
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=95.06 E-value=0.14 Score=27.25 Aligned_cols=32 Identities=16% Similarity=0.231 Sum_probs=26.0
Q ss_pred ceeEEEECCCC---CEEEEeeCCCcEEEEecCCcE
Q 026765 193 GCYCIAIDPMG---RYFAVGSADSLVSLWDISEML 224 (233)
Q Consensus 193 ~v~~i~~~p~~---~~las~s~dg~v~iwd~~~~~ 224 (233)
.+.+++|+|.. .+|+-+-.-|.|.|+|++++.
T Consensus 2 AvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~~f 36 (43)
T PF10313_consen 2 AVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRSNF 36 (43)
T ss_pred CeEEEEeCCCCCcccEEEEEccCCeEEEEEcccCc
Confidence 57899999854 478888788999999999643
No 396
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=94.99 E-value=1.4 Score=34.98 Aligned_cols=156 Identities=15% Similarity=0.169 Sum_probs=89.6
Q ss_pred CEEEEEeCCCCEEEEecccCCCCceeeEE-EecCcCcEE-EEEEcCCCCCEEEEEeCCCeEEEEECCCCeee--eeeeec
Q 026765 33 TKLASGSVDQTARVWHIEPHGHGKVKDIE-LRGHADSVD-QLCWDPKHADLIATASGDKTVRLWDARSGKCS--QQAELS 108 (233)
Q Consensus 33 ~~l~s~~~D~~v~vW~~~~~~~~~~~~~~-~~~h~~~v~-~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~--~~~~~~ 108 (233)
..+.+-|.||++....++..+.......+ +....+++. .-++...+ ..++--+.+|.|.--|+...... ..+..-
T Consensus 148 ~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~~~~~-~~~~F~Sy~G~v~~~dlsg~~~~~~~~~~~~ 226 (342)
T PF06433_consen 148 RGFSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAYSRDG-GRLYFVSYEGNVYSADLSGDSAKFGKPWSLL 226 (342)
T ss_dssp TEEEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S--EEETTT-TEEEEEBTTSEEEEEEETTSSEEEEEEEESS
T ss_pred CceEEEecCCceEEEEECCCCCEeEeeccccCCCCcccccccceECCC-CeEEEEecCCEEEEEeccCCcccccCccccc
Confidence 45777888999888877654432211111 111122221 11222222 23444678888888887655422 122210
Q ss_pred -----------CCeeEEEECCCCCeEEEEcC--------CC--cEEEEEcCCCeeeeeeecCceeeEEEECCCCCEEEEE
Q 026765 109 -----------GENINITYKPDGTHIAVGNR--------DD--ELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLT 167 (233)
Q Consensus 109 -----------~~~~~~~~~~~~~~l~~~~~--------d~--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (233)
+.-.-+++++..++|.+-.. |+ .|.++|+.+.+.+.+.....++.++..+.+.+-++.+
T Consensus 227 t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv~Ri~l~~~~~Si~Vsqd~~P~L~~ 306 (342)
T PF06433_consen 227 TDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRVARIPLEHPIDSIAVSQDDKPLLYA 306 (342)
T ss_dssp -HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEEEEEEEEEEESEEEEESSSS-EEEE
T ss_pred CccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCCeEEEEEeCCCccceEEEccCCCcEEEE
Confidence 11123677766555544221 21 4777899999999988888889999999988755433
Q ss_pred --eCCCeEEEEecCCceeeeEEee
Q 026765 168 --TGNGTVEVLTYPSLRPLDTVVA 189 (233)
Q Consensus 168 --~~~~~v~~~~~~~~~~~~~~~~ 189 (233)
..++.+.++|..+++.+.++..
T Consensus 307 ~~~~~~~l~v~D~~tGk~~~~~~~ 330 (342)
T PF06433_consen 307 LSAGDGTLDVYDAATGKLVRSIEQ 330 (342)
T ss_dssp EETTTTEEEEEETTT--EEEEE--
T ss_pred EcCCCCeEEEEeCcCCcEEeehhc
Confidence 4578999999999998887764
No 397
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=94.79 E-value=1.3 Score=33.34 Aligned_cols=77 Identities=18% Similarity=0.248 Sum_probs=53.5
Q ss_pred EEEEEcCCCeeeeeeecCceeeEEEECCCCCEEEEEeCCCeEEEEecCCceeeeEEeeecCceeEEEECCC--CCEEEEe
Q 026765 132 LTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPM--GRYFAVG 209 (233)
Q Consensus 132 i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~i~~~p~--~~~las~ 209 (233)
=.++|+++.++... .....++...+|+++++.-..+++.-.|..+++.+.++.-....|+|++|.-. .-+.+|+
T Consensus 198 ~~i~dlrk~~~~e~----~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~qitsccFgGkn~d~~yvT~ 273 (310)
T KOG4499|consen 198 KVIFDLRKSQPFES----LEPDGMTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLPTPQITSCCFGGKNLDILYVTT 273 (310)
T ss_pred ceeEEeccCCCcCC----CCCCcceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEcCCCceEEEEecCCCccEEEEEe
Confidence 34677766433321 12234444668888888888999999999999999998888889999999643 2344555
Q ss_pred eCC
Q 026765 210 SAD 212 (233)
Q Consensus 210 s~d 212 (233)
..+
T Consensus 274 aa~ 276 (310)
T KOG4499|consen 274 AAK 276 (310)
T ss_pred hhc
Confidence 443
No 398
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=94.70 E-value=1.5 Score=36.72 Aligned_cols=142 Identities=14% Similarity=0.135 Sum_probs=86.0
Q ss_pred CCCCEE-EEEeCCCeEEEEECCCCeeeeeeeecCCeeEEEECCCCC-------eEEEEcCCCcEEEEEcCCCe-eeeeee
Q 026765 77 KHADLI-ATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDGT-------HIAVGNRDDELTILDVRKFK-PIHRRK 147 (233)
Q Consensus 77 ~~~~~l-~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~-------~l~~~~~d~~i~i~d~~~~~-~~~~~~ 147 (233)
+++.+| ..|+....+.--|+..|+.+..+..+..+ -+.|.|..+ .-++|-.+..+.-.|.|-.. .+....
T Consensus 477 ~dssli~~dg~~~~kLykmDIErGkvveeW~~~ddv-vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~v~e 555 (776)
T COG5167 477 NDSSLIYLDGGERDKLYKMDIERGKVVEEWDLKDDV-VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIKVVE 555 (776)
T ss_pred CCcceEEecCCCcccceeeecccceeeeEeecCCcc-eeecCCchhHHhcCccceEEeecccceEEecccccCCceeeee
Confidence 344444 45666667777788888888888776655 566766432 33566677766666765322 221111
Q ss_pred cCceee----EEEECCCCCEEEEEeCCCeEEEEecCCceeeeEEeeecCceeEEEECCCCCEEEEeeCCCcEEEEec
Q 026765 148 FGYEVN----EIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVSLWDI 220 (233)
Q Consensus 148 ~~~~~~----~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~las~s~dg~v~iwd~ 220 (233)
...-.+ +........++++++..|.+++||.-.-+.-..+.+-+..|..|..+.+|+++.+.+. ..+.+-|+
T Consensus 556 sKdY~tKn~Fss~~tTesGyIa~as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTCk-~yllL~d~ 631 (776)
T COG5167 556 SKDYKTKNKFSSGMTTESGYIAAASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATCK-NYLLLTDV 631 (776)
T ss_pred ehhccccccccccccccCceEEEecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEeec-ceEEEEec
Confidence 111111 1122334568999999999999995432222334566778889999999998655443 34555554
No 399
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=94.64 E-value=0.0036 Score=51.01 Aligned_cols=142 Identities=15% Similarity=0.272 Sum_probs=96.3
Q ss_pred EEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeeeeecCCeeEEEECCCCCeEEE-EcCCCcEEEEEcCCCeeeeeeec-
Q 026765 71 QLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAV-GNRDDELTILDVRKFKPIHRRKF- 148 (233)
Q Consensus 71 ~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~d~~i~i~d~~~~~~~~~~~~- 148 (233)
...|-|.+.+ ++.++.+-.+..||-.. +.......++...+++|+.++..+++ +...+.+.+||+.+.... +...
T Consensus 39 ~~~w~~e~~n-lavaca~tiv~~YD~ag-q~~le~n~tg~aldm~wDkegdvlavlAek~~piylwd~n~eytq-qLE~g 115 (615)
T KOG2247|consen 39 IHRWRPEGHN-LAVACANTIVIYYDKAG-QVILELNPTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQ-QLESG 115 (615)
T ss_pred eeeEecCCCc-eehhhhhhHHHhhhhhc-ceecccCCchhHhhhhhccccchhhhhhhcCCCeeechhhhhhHH-HHhcc
Confidence 3467777766 55677888889998643 33334445556667888888877664 455688999998643211 1111
Q ss_pred -CceeeEEEECCCCCEEEEEeCCCeEEEEecCCceeeeEEeeecCceeEEEECCCCCEEEEeeCCCcEE
Q 026765 149 -GYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVS 216 (233)
Q Consensus 149 -~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~las~s~dg~v~ 216 (233)
.....-+.|++.....+.+.-.|.+.+++..+.+.+...-.|...+.++++.+.+ +.+.++.|..+.
T Consensus 116 g~~s~sll~wsKg~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~lEd-~vil~dcd~~L~ 183 (615)
T KOG2247|consen 116 GTSSKSLLAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTLED-YVILCDCDNTLS 183 (615)
T ss_pred CcchHHHHhhccCCccccccccccceEEEeccchhhhhhhcccccceeEEEecccc-eeeecCcHHHHH
Confidence 1122236788888899999899999999988776655544488899999999965 455566565443
No 400
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=94.48 E-value=2.4 Score=35.07 Aligned_cols=146 Identities=14% Similarity=0.111 Sum_probs=78.5
Q ss_pred CCEEEEEeCCCCEEEEecccCCCCc-eeeEEEecCcCcEEEEEEc---CCCCCEEEEEeCCCeEEEEECCCC--e-----
Q 026765 32 GTKLASGSVDQTARVWHIEPHGHGK-VKDIELRGHADSVDQLCWD---PKHADLIATASGDKTVRLWDARSG--K----- 100 (233)
Q Consensus 32 ~~~l~s~~~D~~v~vW~~~~~~~~~-~~~~~~~~h~~~v~~~~~~---~~~~~~l~sg~~d~~i~iwd~~~~--~----- 100 (233)
...++.||..|.+||+++....... -..++. .-..+|..++.- +......++--.-+.+.||.+... .
T Consensus 37 ~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~-~l~~PILqv~~G~F~s~~~~~~LaVLhP~kl~vY~v~~~~g~~~~g~ 115 (418)
T PF14727_consen 37 SDKIIVGSYSGILRIYDPSGNEFQPEDLLLET-QLKDPILQVECGKFVSGSEDLQLAVLHPRKLSVYSVSLVDGTVEHGN 115 (418)
T ss_pred ccEEEEeccccEEEEEccCCCCCCCccEEEEE-ecCCcEEEEEeccccCCCCcceEEEecCCEEEEEEEEecCCCcccCc
Confidence 4689999999999999985433211 111111 234677777653 222222334466677888877221 1
Q ss_pred -----eeeeeeecCCeeEEEEC----CC-CCeEEEEcCCCcEEEEEcCCCeeeeeeecCceeeEEEECCCCCEEEEEeCC
Q 026765 101 -----CSQQAELSGENINITYK----PD-GTHIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGN 170 (233)
Q Consensus 101 -----~~~~~~~~~~~~~~~~~----~~-~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (233)
......++....+++.- .. ...+++=+.||.+.+|+-+..--......-.-...+.+.+.-+.+++.+.+
T Consensus 116 ~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~~llPgPl~Y~~~tDsfvt~sss 195 (418)
T PF14727_consen 116 QYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPDFLLPGPLCYCPRTDSFVTASSS 195 (418)
T ss_pred EEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCCCCCCcCeEEeecCCEEEEecCc
Confidence 11122223333344332 12 357788899999999996543211111111123345555666666666666
Q ss_pred CeEEEEec
Q 026765 171 GTVEVLTY 178 (233)
Q Consensus 171 ~~v~~~~~ 178 (233)
..+..|.+
T Consensus 196 ~~l~~Yky 203 (418)
T PF14727_consen 196 WTLECYKY 203 (418)
T ss_pred eeEEEecH
Confidence 55655543
No 401
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=94.46 E-value=1.7 Score=33.31 Aligned_cols=108 Identities=19% Similarity=0.213 Sum_probs=63.3
Q ss_pred eeEEEECCCCCeEEEEc--C-CCcEEEEEcCCCeeeeeeecCceeeEEEECCCCCEEEEEeCCCeEEEEe-cCCceeee-
Q 026765 111 NINITYKPDGTHIAVGN--R-DDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNGTVEVLT-YPSLRPLD- 185 (233)
Q Consensus 111 ~~~~~~~~~~~~l~~~~--~-d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~-~~~~~~~~- 185 (233)
....++++++..++... . ...+.++... ........+..+..-.|++++..+.+...+....++. ...++...
T Consensus 26 ~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~--~~~~~~~~g~~l~~PS~d~~g~~W~v~~~~~~~~~~~~~~~g~~~~~ 103 (253)
T PF10647_consen 26 VTSPAVSPDGSRVAAVSEGDGGRSLYVGPAG--GPVRPVLTGGSLTRPSWDPDGWVWTVDDGSGGVRVVRDSASGTGEPV 103 (253)
T ss_pred ccceEECCCCCeEEEEEEcCCCCEEEEEcCC--CcceeeccCCccccccccCCCCEEEEEcCCCceEEEEecCCCcceeE
Confidence 45678899998776554 2 2334444432 2222222334566668899988888877777766664 22222111
Q ss_pred EEee-ec-CceeEEEECCCCCEEEEee---CCCcEEEEec
Q 026765 186 TVVA-HT-AGCYCIAIDPMGRYFAVGS---ADSLVSLWDI 220 (233)
Q Consensus 186 ~~~~-~~-~~v~~i~~~p~~~~las~s---~dg~v~iwd~ 220 (233)
.+.. .. ..|..+++||||..+|.-. .++.|.|=-+
T Consensus 104 ~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V 143 (253)
T PF10647_consen 104 EVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGV 143 (253)
T ss_pred EecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEE
Confidence 1111 11 2799999999999877655 3455655443
No 402
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=94.32 E-value=2.6 Score=34.86 Aligned_cols=146 Identities=10% Similarity=0.080 Sum_probs=79.7
Q ss_pred cCCCCCEEEEEeCCCeEEEEECCCCe-----eeeeeeecCCeeEEE---ECC-CCCeEEEEcCCCcEEEEEcCCCe----
Q 026765 75 DPKHADLIATASGDKTVRLWDARSGK-----CSQQAELSGENINIT---YKP-DGTHIAVGNRDDELTILDVRKFK---- 141 (233)
Q Consensus 75 ~~~~~~~l~sg~~d~~i~iwd~~~~~-----~~~~~~~~~~~~~~~---~~~-~~~~l~~~~~d~~i~i~d~~~~~---- 141 (233)
++++...|+.|+..|.++||+-..+. ..-+.....++..+. |.+ .....++.-.-.++.+|.+....
T Consensus 33 ~~~~~d~IivGS~~G~LrIy~P~~~~~~~~~lllE~~l~~PILqv~~G~F~s~~~~~~LaVLhP~kl~vY~v~~~~g~~~ 112 (418)
T PF14727_consen 33 SPSGSDKIIVGSYSGILRIYDPSGNEFQPEDLLLETQLKDPILQVECGKFVSGSEDLQLAVLHPRKLSVYSVSLVDGTVE 112 (418)
T ss_pred CCCCccEEEEeccccEEEEEccCCCCCCCccEEEEEecCCcEEEEEeccccCCCCcceEEEecCCEEEEEEEEecCCCcc
Confidence 34456788999999999999875433 222233344454443 212 12222223444567777762211
Q ss_pred ------eeeeeec--CceeeEEEECC----C-CCEEEEEeCCCeEEEEecCCceeeeEEeeecCceeEEEECCCCCEEEE
Q 026765 142 ------PIHRRKF--GYEVNEIAWNM----T-GEMFFLTTGNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAV 208 (233)
Q Consensus 142 ------~~~~~~~--~~~~~~~~~~~----~-~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~las 208 (233)
....+.+ ......+...+ . ..++++-+-||.+.+++-+.......+.. ---.-.+.|.|....|++
T Consensus 113 ~g~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~~lp~-~llPgPl~Y~~~tDsfvt 191 (418)
T PF14727_consen 113 HGNQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSRFLPD-FLLPGPLCYCPRTDSFVT 191 (418)
T ss_pred cCcEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEEEcCC-CCCCcCeEEeecCCEEEE
Confidence 0111111 11222233222 2 36788889999999998765332222222 212235677787788888
Q ss_pred eeCCCcEEEEecC
Q 026765 209 GSADSLVSLWDIS 221 (233)
Q Consensus 209 ~s~dg~v~iwd~~ 221 (233)
++.+..+.-|...
T Consensus 192 ~sss~~l~~Yky~ 204 (418)
T PF14727_consen 192 ASSSWTLECYKYQ 204 (418)
T ss_pred ecCceeEEEecHH
Confidence 8888777777653
No 403
>PHA02713 hypothetical protein; Provisional
Probab=94.29 E-value=2.5 Score=36.50 Aligned_cols=91 Identities=8% Similarity=0.059 Sum_probs=45.8
Q ss_pred CCEEEEEeCC------CeEEEEECCCCeeeeeeeecCC--eeEEEECCCCCeEEEEcCCC-----cEEEEEcCCCeeeee
Q 026765 79 ADLIATASGD------KTVRLWDARSGKCSQQAELSGE--NINITYKPDGTHIAVGNRDD-----ELTILDVRKFKPIHR 145 (233)
Q Consensus 79 ~~~l~sg~~d------~~i~iwd~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~d~-----~i~i~d~~~~~~~~~ 145 (233)
+.+++.||.+ ..+..||..+............ ...++ .-+++..+.||.++ .+..||..+.+....
T Consensus 304 ~~IYviGG~~~~~~~~~~v~~Yd~~~n~W~~~~~m~~~R~~~~~~-~~~g~IYviGG~~~~~~~~sve~Ydp~~~~W~~~ 382 (557)
T PHA02713 304 NEIIIAGGYNFNNPSLNKVYKINIENKIHVELPPMIKNRCRFSLA-VIDDTIYAIGGQNGTNVERTIECYTMGDDKWKML 382 (557)
T ss_pred CEEEEEcCCCCCCCccceEEEEECCCCeEeeCCCCcchhhceeEE-EECCEEEEECCcCCCCCCceEEEEECCCCeEEEC
Confidence 4567777754 3467888877654322211111 11222 23566777777653 477899876544322
Q ss_pred eecCceee-EEEECCCCCEEEEEeCC
Q 026765 146 RKFGYEVN-EIAWNMTGEMFFLTTGN 170 (233)
Q Consensus 146 ~~~~~~~~-~~~~~~~~~~~~~~~~~ 170 (233)
.....+.. ......+++..+.|+.+
T Consensus 383 ~~mp~~r~~~~~~~~~g~IYviGG~~ 408 (557)
T PHA02713 383 PDMPIALSSYGMCVLDQYIYIIGGRT 408 (557)
T ss_pred CCCCcccccccEEEECCEEEEEeCCC
Confidence 22211111 11112367777777654
No 404
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=94.17 E-value=3.3 Score=35.51 Aligned_cols=59 Identities=15% Similarity=0.085 Sum_probs=37.1
Q ss_pred cEEEEEcCCCeeeeeeecCceeeEEEECCCCCEEEEEeCCCeEEEEecCCceeeeEEee
Q 026765 131 ELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVA 189 (233)
Q Consensus 131 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 189 (233)
.+.-+|+.+++.....+...+...-.....+..++.++.+|.++.+|.++++.+-.+..
T Consensus 442 ~l~AiD~~tGk~~W~~~~~~p~~~~~l~t~g~lvf~g~~~G~l~a~D~~TGe~lw~~~~ 500 (527)
T TIGR03075 442 SLIAWDPITGKIVWEHKEDFPLWGGVLATAGDLVFYGTLEGYFKAFDAKTGEELWKFKT 500 (527)
T ss_pred eEEEEeCCCCceeeEecCCCCCCCcceEECCcEEEEECCCCeEEEEECCCCCEeEEEeC
Confidence 45566766666555444332211111112455777788899999999999998877654
No 405
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=94.14 E-value=0.37 Score=25.07 Aligned_cols=41 Identities=24% Similarity=0.366 Sum_probs=27.2
Q ss_pred CCCCCEEEEEeCCCeEEEEECCCCeeeeeeeecCCeeEEEE
Q 026765 76 PKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINITY 116 (233)
Q Consensus 76 ~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~ 116 (233)
|++..++++.-.++.|.++|..+++..........+..+.|
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~vg~~P~~i~~ 41 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPVGGYPFGVAV 41 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEEECCCCCceEEe
Confidence 34555666666788999999988877666655444444443
No 406
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=94.10 E-value=2.6 Score=34.02 Aligned_cols=142 Identities=18% Similarity=0.324 Sum_probs=67.9
Q ss_pred cEEEEEEcCCCCCEE-EEEeCCC---eEEEEECCCCeeeeeeeecCC-----eeEEEEC-CCCCeE-EEEcCCCcEE--E
Q 026765 68 SVDQLCWDPKHADLI-ATASGDK---TVRLWDARSGKCSQQAELSGE-----NINITYK-PDGTHI-AVGNRDDELT--I 134 (233)
Q Consensus 68 ~v~~~~~~~~~~~~l-~sg~~d~---~i~iwd~~~~~~~~~~~~~~~-----~~~~~~~-~~~~~l-~~~~~d~~i~--i 134 (233)
.+..+.|.+++..++ ...+.+. .+.+.|..++.+......... .....+. +++..+ .....+|--+ +
T Consensus 185 yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~ 264 (353)
T PF00930_consen 185 YLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISERDGYRHLYL 264 (353)
T ss_dssp EEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEE
T ss_pred CcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeecccccccCCCCEEEEEEEcCCCcEEEE
Confidence 355667776654233 2333332 234556666544322221111 1134443 555544 4444666544 4
Q ss_pred EEcCCCeeeeeeecCceee-EEEECCCCCEEE-EEeCC----CeEEEEecCCceeeeEEeeecCceeEEEECCCCCEEEE
Q 026765 135 LDVRKFKPIHRRKFGYEVN-EIAWNMTGEMFF-LTTGN----GTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAV 208 (233)
Q Consensus 135 ~d~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-~~~~~----~~v~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~las 208 (233)
++...............+. .+.++++++.+. .+..+ ..+...++........+......-..++|||++++++-
T Consensus 265 ~~~~~~~~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~~~~LT~~~~~~~~~~~Spdg~y~v~ 344 (353)
T PF00930_consen 265 YDLDGGKPRQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGGEPKCLTCEDGDHYSASFSPDGKYYVD 344 (353)
T ss_dssp EETTSSEEEESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETTEEEESSTTSSTTEEEEE-TTSSEEEE
T ss_pred EcccccceeccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCCCeEeccCCCCCceEEEECCCCCEEEE
Confidence 5555444332222334564 467788877655 44432 24444455512333444433333368999999998764
Q ss_pred e
Q 026765 209 G 209 (233)
Q Consensus 209 ~ 209 (233)
.
T Consensus 345 ~ 345 (353)
T PF00930_consen 345 T 345 (353)
T ss_dssp E
T ss_pred E
Confidence 3
No 407
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=93.73 E-value=0.55 Score=42.82 Aligned_cols=144 Identities=13% Similarity=0.192 Sum_probs=87.2
Q ss_pred EEEEEECcCCCEE--EEEeCCCCEEEEecccCCCCceee-EEEecC------cCcEEEEEEcCCCCCEEEEEeCCCeEEE
Q 026765 23 VHSVAWNCTGTKL--ASGSVDQTARVWHIEPHGHGKVKD-IELRGH------ADSVDQLCWDPKHADLIATASGDKTVRL 93 (233)
Q Consensus 23 V~~~~~~~~~~~l--~s~~~D~~v~vW~~~~~~~~~~~~-~~~~~h------~~~v~~~~~~~~~~~~l~sg~~d~~i~i 93 (233)
+..+..++|++.. +..+.+-.|..+|+.......... .-+..| ..-..++.|+|.-....+....|+.|++
T Consensus 103 i~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~V 182 (1405)
T KOG3630|consen 103 IVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLRV 182 (1405)
T ss_pred ceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchhh
Confidence 4444445676543 333445578889986433222111 111111 1235677898876666677888999998
Q ss_pred EECCCCe-eeeeeeecCCeeEEEECCCCCeEEEEcCCCcEEEEEcCCC--eeeeee--ecCceeeEEEECCCCCEEEE
Q 026765 94 WDARSGK-CSQQAELSGENINITYKPDGTHIAVGNRDDELTILDVRKF--KPIHRR--KFGYEVNEIAWNMTGEMFFL 166 (233)
Q Consensus 94 wd~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~--~~~~~~--~~~~~~~~~~~~~~~~~~~~ 166 (233)
..+.... ....+.+.....+++|+|.|+.+++|-..|++..|..... ..++.. ...+.+.++.|=..-.++++
T Consensus 183 ~~~~~~~~~v~s~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~leik~~ip~Pp~~e~yrvl~v~Wl~t~eflvv 260 (1405)
T KOG3630|consen 183 KSTKQLAQNVTSFPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSLEIKSEIPEPPVEENYRVLSVTWLSTQEFLVV 260 (1405)
T ss_pred hhhhhhhhhhcccCcccceeeEEeccccceeeEecCCCeEEEeecccceeecccCCCcCCCcceeEEEEecceeEEEE
Confidence 8765432 2233445556678999999999999999999998875432 111111 11356888888666555543
No 408
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=93.72 E-value=2.6 Score=32.73 Aligned_cols=100 Identities=16% Similarity=0.283 Sum_probs=65.0
Q ss_pred EEEEEcCCCCCEEEEEeCCCeE-EEEECCCCeeeeeeee-cCCe-e-EEEECCCCCeEEEEcCC-----CcEEEEEcCCC
Q 026765 70 DQLCWDPKHADLIATASGDKTV-RLWDARSGKCSQQAEL-SGEN-I-NITYKPDGTHIAVGNRD-----DELTILDVRKF 140 (233)
Q Consensus 70 ~~~~~~~~~~~~l~sg~~d~~i-~iwd~~~~~~~~~~~~-~~~~-~-~~~~~~~~~~l~~~~~d-----~~i~i~d~~~~ 140 (233)
..++|+|..+.-++.+-.-|+. .++|....+....... ++.. + --.|+|||.+|...-.| |.|-+||.+..
T Consensus 71 Hgi~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd~r~~ 150 (366)
T COG3490 71 HGIAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYDAREG 150 (366)
T ss_pred CCeecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCCCCCCceEEEEecccc
Confidence 3577888877777778777765 5788877665443321 1111 1 14789999999876543 56899998632
Q ss_pred -eeeeee-ecCceeeEEEECCCCCEEEEEeC
Q 026765 141 -KPIHRR-KFGYEVNEIAWNMTGEMFFLTTG 169 (233)
Q Consensus 141 -~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~ 169 (233)
+.+-.. .++...-.+.|.+||+.++.+.+
T Consensus 151 fqrvgE~~t~GiGpHev~lm~DGrtlvvanG 181 (366)
T COG3490 151 FQRVGEFSTHGIGPHEVTLMADGRTLVVANG 181 (366)
T ss_pred cceecccccCCcCcceeEEecCCcEEEEeCC
Confidence 222222 23445567888899999988765
No 409
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=93.42 E-value=1.8 Score=36.41 Aligned_cols=77 Identities=16% Similarity=0.134 Sum_probs=51.7
Q ss_pred CceeeEEEECCCCCEEEEEeCCCeEEEEecC---------Cceee---eEE-------ee-ecCceeEEEECCCC---CE
Q 026765 149 GYEVNEIAWNMTGEMFFLTTGNGTVEVLTYP---------SLRPL---DTV-------VA-HTAGCYCIAIDPMG---RY 205 (233)
Q Consensus 149 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~---------~~~~~---~~~-------~~-~~~~v~~i~~~p~~---~~ 205 (233)
..++..+..++.|..++..+.+|.+..+-.+ ++++. +++ .. ..-.+..++|+|+. .+
T Consensus 103 ~feV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~h 182 (741)
T KOG4460|consen 103 LFEVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDPH 182 (741)
T ss_pred eEEEEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCce
Confidence 4567788888999999888888877665422 22211 111 00 01124467899986 68
Q ss_pred EEEeeCCCcEEEEecCCcEE
Q 026765 206 FAVGSADSLVSLWDISEMLC 225 (233)
Q Consensus 206 las~s~dg~v~iwd~~~~~~ 225 (233)
|..-+.|.++||||+.+...
T Consensus 183 L~iL~sdnviRiy~lS~~te 202 (741)
T KOG4460|consen 183 LVLLTSDNVIRIYSLSEPTE 202 (741)
T ss_pred EEEEecCcEEEEEecCCcch
Confidence 88899999999999986543
No 410
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=93.36 E-value=2.8 Score=34.62 Aligned_cols=90 Identities=12% Similarity=0.065 Sum_probs=57.6
Q ss_pred eeeeCccccEEEEEECcCCCEEEEEeCCCCEEEEecccCCCCceeeEEEecCcCc-EEEEEEcCCC--------------
Q 026765 14 REYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADS-VDQLCWDPKH-------------- 78 (233)
Q Consensus 14 ~~~~~H~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~-v~~~~~~~~~-------------- 78 (233)
..+......+.+++.+|.+.+.|....=|.|.++|+.... ....++|..++ +..+......
T Consensus 301 ~~l~D~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~----vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~ 376 (415)
T PF14655_consen 301 FGLPDSKREGESICLSPSGRLAAVTDSLGRVLLIDVARGI----VVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSS 376 (415)
T ss_pred EeeccCCceEEEEEECCCCCEEEEEcCCCcEEEEECCCCh----hhhhhccCccceEEEEEeecccccccccccccCCCC
Confidence 4566677889999999999999888888999999986421 11124454432 1111111110
Q ss_pred ---CCEEEEEeCCCeEEEEECCCCeeeeeeee
Q 026765 79 ---ADLIATASGDKTVRLWDARSGKCSQQAEL 107 (233)
Q Consensus 79 ---~~~l~sg~~d~~i~iwd~~~~~~~~~~~~ 107 (233)
.-+++-+-.-|.|.||.++.+..+..+..
T Consensus 377 ~~~l~LvIyaprRg~lEvW~~~~g~Rv~a~~v 408 (415)
T PF14655_consen 377 RFALFLVIYAPRRGILEVWSMRQGPRVAAFNV 408 (415)
T ss_pred cceEEEEEEeccCCeEEEEecCCCCEEEEEEe
Confidence 11345567788999999998876665543
No 411
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=93.14 E-value=2 Score=39.47 Aligned_cols=126 Identities=14% Similarity=0.156 Sum_probs=75.8
Q ss_pred EEeCCCeEEEEECCCCeeee---e---------eeecCCeeEEEECCCCC-eEEEEcCCCcEEEEEcCCCee-eeeeecC
Q 026765 84 TASGDKTVRLWDARSGKCSQ---Q---------AELSGENINITYKPDGT-HIAVGNRDDELTILDVRKFKP-IHRRKFG 149 (233)
Q Consensus 84 sg~~d~~i~iwd~~~~~~~~---~---------~~~~~~~~~~~~~~~~~-~l~~~~~d~~i~i~d~~~~~~-~~~~~~~ 149 (233)
..+.+-.|..||+++-.... . ........++.|.|.-. ..+++..|+.|.+..+..... .......
T Consensus 119 ~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl~V~~~~~~~~~v~s~p~t 198 (1405)
T KOG3630|consen 119 STSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSLRVKSTKQLAQNVTSFPVT 198 (1405)
T ss_pred EecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccchhhhhhhhhhhhhcccCcc
Confidence 33444578889986532111 0 01112234577777533 346677788888776543222 2223455
Q ss_pred ceeeEEEECCCCCEEEEEeCCCeEEEEecCCceeeeEEee----ecCceeEEEECCCCCEEEEee
Q 026765 150 YEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVA----HTAGCYCIAIDPMGRYFAVGS 210 (233)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~----~~~~v~~i~~~p~~~~las~s 210 (233)
...++++|+|.|+.+++|-.+|++.-|... .+....+.. -...|.+|.|-....+++.-+
T Consensus 199 ~~~Tav~WSprGKQl~iG~nnGt~vQy~P~-leik~~ip~Pp~~e~yrvl~v~Wl~t~eflvvy~ 262 (1405)
T KOG3630|consen 199 NSQTAVLWSPRGKQLFIGRNNGTEVQYEPS-LEIKSEIPEPPVEENYRVLSVTWLSTQEFLVVYG 262 (1405)
T ss_pred cceeeEEeccccceeeEecCCCeEEEeecc-cceeecccCCCcCCCcceeEEEEecceeEEEEec
Confidence 678999999999999999999999887643 222222211 124688899877666666543
No 412
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=93.12 E-value=4 Score=33.15 Aligned_cols=145 Identities=13% Similarity=0.074 Sum_probs=71.9
Q ss_pred ccEEEEEECcCCCEEEEEe-----------CCC-CEEEEecccCCCCceee-EEEecCcCcEEEEEEcCCCCCEEEEEeC
Q 026765 21 KKVHSVAWNCTGTKLASGS-----------VDQ-TARVWHIEPHGHGKVKD-IELRGHADSVDQLCWDPKHADLIATASG 87 (233)
Q Consensus 21 ~~V~~~~~~~~~~~l~s~~-----------~D~-~v~vW~~~~~~~~~~~~-~~~~~h~~~v~~~~~~~~~~~~l~sg~~ 87 (233)
....+++|.++|.+.++-. ..+ .|.+++-.. ..++... ..+.........+++.+++ +++ +..
T Consensus 14 ~~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~d-gdG~~d~~~vfa~~l~~p~Gi~~~~~G--lyV-~~~ 89 (367)
T TIGR02604 14 RNPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDAD-GDGKYDKSNVFAEELSMVTGLAVAVGG--VYV-ATP 89 (367)
T ss_pred CCCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCC-CCCCcceeEEeecCCCCccceeEecCC--EEE-eCC
Confidence 4566889999999887753 122 565554221 1222111 1222223345778887764 554 444
Q ss_pred CCeEEEEECCCC-----eeeee---eee-----cCCeeEEEECCCCCeEEEEcCC-------------------CcEEEE
Q 026765 88 DKTVRLWDARSG-----KCSQQ---AEL-----SGENINITYKPDGTHIAVGNRD-------------------DELTIL 135 (233)
Q Consensus 88 d~~i~iwd~~~~-----~~~~~---~~~-----~~~~~~~~~~~~~~~l~~~~~d-------------------~~i~i~ 135 (233)
....++.|.... +.... +.. +.....+.+.|||...++-+.. +.+.-+
T Consensus 90 ~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~ 169 (367)
T TIGR02604 90 PDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRY 169 (367)
T ss_pred CeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEE
Confidence 444445454321 11111 111 1123358899998766644421 223333
Q ss_pred EcCCCeeeeeeecC-ceeeEEEECCCCCEEEEEeCC
Q 026765 136 DVRKFKPIHRRKFG-YEVNEIAWNMTGEMFFLTTGN 170 (233)
Q Consensus 136 d~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 170 (233)
+....+ ......+ .....++|+++|+++++-..+
T Consensus 170 ~pdg~~-~e~~a~G~rnp~Gl~~d~~G~l~~tdn~~ 204 (367)
T TIGR02604 170 NPDGGK-LRVVAHGFQNPYGHSVDSWGDVFFCDNDD 204 (367)
T ss_pred ecCCCe-EEEEecCcCCCccceECCCCCEEEEccCC
Confidence 433322 1112222 235678999999887765433
No 413
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=92.98 E-value=6.6 Score=35.31 Aligned_cols=152 Identities=15% Similarity=0.156 Sum_probs=85.1
Q ss_pred CEEEEEeCCCeEEEEECCCCeeeeeeeecCCe-------------eEEEECC--CCCeEEEEcC----------CCcEEE
Q 026765 80 DLIATASGDKTVRLWDARSGKCSQQAELSGEN-------------INITYKP--DGTHIAVGNR----------DDELTI 134 (233)
Q Consensus 80 ~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~-------------~~~~~~~--~~~~l~~~~~----------d~~i~i 134 (233)
..++.++.|+.+.-.|.++|+....+...+.+ ....-.| .+..+++|+. +|.|+-
T Consensus 261 ~rV~~~T~Dg~LiALDA~TGk~~W~fg~~G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A 340 (764)
T TIGR03074 261 RRIILPTSDARLIALDADTGKLCEDFGNNGTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRA 340 (764)
T ss_pred CEEEEecCCCeEEEEECCCCCEEEEecCCCceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEE
Confidence 35677888999999999998866543322111 0011111 1235555542 577999
Q ss_pred EEcCCCeeeeeeecCce-------------------eeEEEECCCCCEEEEEeC------------------CCeEEEEe
Q 026765 135 LDVRKFKPIHRRKFGYE-------------------VNEIAWNMTGEMFFLTTG------------------NGTVEVLT 177 (233)
Q Consensus 135 ~d~~~~~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~~------------------~~~v~~~~ 177 (233)
+|.++++.+.......+ ....++.+....+..+.+ .+.+.-.|
T Consensus 341 ~Da~TGkl~W~~~~g~p~~~~~~~~g~~~~~gg~n~W~~~s~D~~~glvy~ptGn~~pd~~g~~r~~~~n~y~~slvALD 420 (764)
T TIGR03074 341 FDVNTGALVWAWDPGNPDPTAPPAPGETYTRNTPNSWSVASYDEKLGLVYLPMGNQTPDQWGGDRTPADEKYSSSLVALD 420 (764)
T ss_pred EECCCCcEeeEEecCCCCcccCCCCCCEeccCCCCccCceEEcCCCCeEEEeCCCccccccCCccccCcccccceEEEEe
Confidence 99998887655432100 012333444444444332 23444455
Q ss_pred cCCceeeeEEee--ec-------CceeEEEECC-CCC---EEEEeeCCCcEEEEecCCcEEEEeeec
Q 026765 178 YPSLRPLDTVVA--HT-------AGCYCIAIDP-MGR---YFAVGSADSLVSLWDISEMLCVRTFTK 231 (233)
Q Consensus 178 ~~~~~~~~~~~~--~~-------~~v~~i~~~p-~~~---~las~s~dg~v~iwd~~~~~~i~~~~~ 231 (233)
.++++..-.+.. |+ ....-+.+.- +|+ .++.++.+|.+.+.|.++|+.+...++
T Consensus 421 ~~TGk~~W~~Q~~~hD~WD~D~~~~p~L~d~~~~~G~~~~~v~~~~K~G~~~vlDr~tG~~l~~~~e 487 (764)
T TIGR03074 421 ATTGKERWVFQTVHHDLWDMDVPAQPSLVDLPDADGTTVPALVAPTKQGQIYVLDRRTGEPIVPVEE 487 (764)
T ss_pred CCCCceEEEecccCCccccccccCCceEEeeecCCCcEeeEEEEECCCCEEEEEECCCCCEEeecee
Confidence 556555433332 11 0111122322 553 788999999999999999998876544
No 414
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=92.51 E-value=1.4 Score=32.96 Aligned_cols=66 Identities=9% Similarity=0.040 Sum_probs=49.3
Q ss_pred ECCCCCEEEEEeCCCeEEEEecCCceeeeEE------e--------eecCceeEEEECCCCCEEEEeeCCCcEEEEecCC
Q 026765 157 WNMTGEMFFLTTGNGTVEVLTYPSLRPLDTV------V--------AHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISE 222 (233)
Q Consensus 157 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~------~--------~~~~~v~~i~~~p~~~~las~s~dg~v~iwd~~~ 222 (233)
+...++++++-+.+|.+++||+...+.+..- . .....|..+.++.+|.-+++-+ +|..+.||.+-
T Consensus 18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~~~L 96 (219)
T PF07569_consen 18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYSPDL 96 (219)
T ss_pred EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEecccc
Confidence 3457889999999999999999876543221 1 2445688889998888777665 57889999875
Q ss_pred c
Q 026765 223 M 223 (233)
Q Consensus 223 ~ 223 (233)
+
T Consensus 97 ~ 97 (219)
T PF07569_consen 97 G 97 (219)
T ss_pred c
Confidence 4
No 415
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=92.45 E-value=1.8 Score=37.19 Aligned_cols=76 Identities=16% Similarity=0.236 Sum_probs=42.3
Q ss_pred cCCCEEEEEeCCCCEEEEecccCC-CC-ceeeEEEec--------------------CcCcEEEEEEcC---CCCCEEEE
Q 026765 30 CTGTKLASGSVDQTARVWHIEPHG-HG-KVKDIELRG--------------------HADSVDQLCWDP---KHADLIAT 84 (233)
Q Consensus 30 ~~~~~l~s~~~D~~v~vW~~~~~~-~~-~~~~~~~~~--------------------h~~~v~~~~~~~---~~~~~l~s 84 (233)
++...++.+..||.+......... .+ ......+.. -...+..++.++ ++..++++
T Consensus 156 ~~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t 235 (547)
T PF11715_consen 156 DSEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFT 235 (547)
T ss_dssp -SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEE
T ss_pred cCCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEE
Confidence 466777888888888776654311 11 111111110 112345555554 24578889
Q ss_pred EeCCCeEEEEECCCCeeeeee
Q 026765 85 ASGDKTVRLWDARSGKCSQQA 105 (233)
Q Consensus 85 g~~d~~i~iwd~~~~~~~~~~ 105 (233)
-+.|+.+|+||+.++++....
T Consensus 236 l~~D~~LRiW~l~t~~~~~~~ 256 (547)
T PF11715_consen 236 LSRDHTLRIWSLETGQCLATI 256 (547)
T ss_dssp EETTSEEEEEETTTTCEEEEE
T ss_pred EeCCCeEEEEECCCCeEEEEe
Confidence 999999999999999985543
No 416
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=92.07 E-value=5 Score=31.68 Aligned_cols=102 Identities=22% Similarity=0.401 Sum_probs=57.7
Q ss_pred CCeeEEEECCCCCeEEEEcCCCcEEEEEcCC--CeeeeeeecCceeeEEEECCCCCEEEEEeCCCeEEEEecC-Cceeee
Q 026765 109 GENINITYKPDGTHIAVGNRDDELTILDVRK--FKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYP-SLRPLD 185 (233)
Q Consensus 109 ~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~~~ 185 (233)
+....+..+++|++++++....-+.-||... .++ +.......+..+.|.+++.+++++ ..|.++.=+.. ..+.-.
T Consensus 145 gs~~~~~r~~dG~~vavs~~G~~~~s~~~G~~~w~~-~~r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~~~~~w~ 222 (302)
T PF14870_consen 145 GSINDITRSSDGRYVAVSSRGNFYSSWDPGQTTWQP-HNRNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDPDDGETWS 222 (302)
T ss_dssp --EEEEEE-TTS-EEEEETTSSEEEEE-TT-SS-EE-EE--SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-TTEEEEE-
T ss_pred ceeEeEEECCCCcEEEEECcccEEEEecCCCccceE-EccCccceehhceecCCCCEEEEe-CCcEEEEccCCCCccccc
Confidence 3455677789999999887777777888643 233 333345679999999998877765 77888776622 222111
Q ss_pred E----EeeecCceeEEEECCCCCEEEEeeCC
Q 026765 186 T----VVAHTAGCYCIAIDPMGRYFAVGSAD 212 (233)
Q Consensus 186 ~----~~~~~~~v~~i~~~p~~~~las~s~d 212 (233)
. +....-.+..++|.+++...|+|+..
T Consensus 223 ~~~~~~~~~~~~~ld~a~~~~~~~wa~gg~G 253 (302)
T PF14870_consen 223 EPIIPIKTNGYGILDLAYRPPNEIWAVGGSG 253 (302)
T ss_dssp --B-TTSS--S-EEEEEESSSS-EEEEESTT
T ss_pred cccCCcccCceeeEEEEecCCCCEEEEeCCc
Confidence 1 11123347889999988888877654
No 417
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=92.02 E-value=1.7 Score=32.46 Aligned_cols=63 Identities=11% Similarity=0.089 Sum_probs=43.3
Q ss_pred ECCCCCeEEEEcCCCcEEEEEcCCCeeeeee---------------ecCceeeEEEECCCCCEEEEEeCCCeEEEEecC
Q 026765 116 YKPDGTHIAVGNRDDELTILDVRKFKPIHRR---------------KFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYP 179 (233)
Q Consensus 116 ~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 179 (233)
+..+++++++.+.+|.+.+||+.+.+.+... .....+..+..+.+|.-++. -.+|..+.|+.+
T Consensus 18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~-lsng~~y~y~~~ 95 (219)
T PF07569_consen 18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVT-LSNGDSYSYSPD 95 (219)
T ss_pred EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCCCEEEE-EeCCCEEEeccc
Confidence 4457889999999999999999876644322 12234666777777766554 345677777753
No 418
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=91.99 E-value=0.12 Score=45.62 Aligned_cols=130 Identities=15% Similarity=0.204 Sum_probs=72.5
Q ss_pred CCeEEEEECCCCeeee--eeeecCCeeEEEECC-CCCeEEEEcCCCcEEEEEcCC--Ceeeeee------ecCceeeEEE
Q 026765 88 DKTVRLWDARSGKCSQ--QAELSGENINITYKP-DGTHIAVGNRDDELTILDVRK--FKPIHRR------KFGYEVNEIA 156 (233)
Q Consensus 88 d~~i~iwd~~~~~~~~--~~~~~~~~~~~~~~~-~~~~l~~~~~d~~i~i~d~~~--~~~~~~~------~~~~~~~~~~ 156 (233)
.+-+++=+........ .-.+.+.+..+.|.. +...+. -.=|.+.+||+.. ++....+ +.+..+.-+.
T Consensus 110 ~~~vrvaN~~~sm~~~~l~kgf~G~v~dl~fah~~~pk~~--~~vg~lfVy~vd~l~G~iq~~l~v~~~~p~gs~~~~V~ 187 (1283)
T KOG1916|consen 110 ENGVRVANQEPSMRHNELAKGFPGGVGDLQFAHTKCPKGR--RLVGELFVYDVDVLQGEIQPQLEVTPITPYGSDPQLVS 187 (1283)
T ss_pred hhhhhhccCcchhHHHHHHhcCCCCcccccccccCChHHH--HHhhhhheeehHhhccccccceEEeecCcCCCCcceee
Confidence 3456665554332100 112345555566632 111111 1225678898753 2222111 2233445556
Q ss_pred ECC---CCCEEEEEeCCCeEEEEecCCceeeeEEeeecCceeEE-----------EECCCCCEEEEeeCCCcEEEEec
Q 026765 157 WNM---TGEMFFLTTGNGTVEVLTYPSLRPLDTVVAHTAGCYCI-----------AIDPMGRYFAVGSADSLVSLWDI 220 (233)
Q Consensus 157 ~~~---~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~i-----------~~~p~~~~las~s~dg~v~iwd~ 220 (233)
|.| +.-++..+..++.+++....+... .-+.+|..++..+ .+||||+.+|.++.||.++.|-+
T Consensus 188 wcp~~~~~~~ic~~~~~~~i~lL~~~ra~~-~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qi 264 (1283)
T KOG1916|consen 188 WCPIAVNKVYICYGLKGGEIRLLNINRALR-SLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQI 264 (1283)
T ss_pred ecccccccceeeeccCCCceeEeeechHHH-HHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceeee
Confidence 654 446677788889999888754322 3345576655443 37999999999999999888764
No 419
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=91.93 E-value=5.9 Score=32.20 Aligned_cols=61 Identities=20% Similarity=0.300 Sum_probs=35.6
Q ss_pred eeeEEEECCCCCEEEEEeCC-------------------CeEEEEecCCceeeeEEeeecCceeEEEECCCCCEEEEeeC
Q 026765 151 EVNEIAWNMTGEMFFLTTGN-------------------GTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSA 211 (233)
Q Consensus 151 ~~~~~~~~~~~~~~~~~~~~-------------------~~v~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~las~s~ 211 (233)
....+.|.|+|.+.++-+.. |.+..++.+..+. ..+.......+.++|+|+|+++++-..
T Consensus 125 ~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~g~i~r~~pdg~~~-e~~a~G~rnp~Gl~~d~~G~l~~tdn~ 203 (367)
T TIGR02604 125 SLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLGGGLFRYNPDGGKL-RVVAHGFQNPYGHSVDSWGDVFFCDND 203 (367)
T ss_pred cccCceECCCCCEEEecccCCCceeccCCCccCcccccCceEEEEecCCCeE-EEEecCcCCCccceECCCCCEEEEccC
Confidence 36688999999877654421 3344444433322 222222233568999999988876443
Q ss_pred C
Q 026765 212 D 212 (233)
Q Consensus 212 d 212 (233)
+
T Consensus 204 ~ 204 (367)
T TIGR02604 204 D 204 (367)
T ss_pred C
Confidence 3
No 420
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=91.88 E-value=3 Score=36.73 Aligned_cols=103 Identities=11% Similarity=0.129 Sum_probs=68.4
Q ss_pred CCCCeEEEEcCCCcEEEEEcCC-------C-------------eeeeeeecCceeeEEEEC--CCCCEEEEEeCCCeEEE
Q 026765 118 PDGTHIAVGNRDDELTILDVRK-------F-------------KPIHRRKFGYEVNEIAWN--MTGEMFFLTTGNGTVEV 175 (233)
Q Consensus 118 ~~~~~l~~~~~d~~i~i~d~~~-------~-------------~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~v~~ 175 (233)
-+...|+++..||.+.+|.++. . ++......+....+++++ ...+++++++....|.+
T Consensus 112 g~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~~rlIAVSsNs~~VTV 191 (717)
T PF08728_consen 112 GGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKKSRLIAVSSNSQEVTV 191 (717)
T ss_pred CCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecCcceEEEEecCCceEEE
Confidence 3556788899999999997521 0 011122234456778887 77888888888888888
Q ss_pred EecCCc--e-eeeEEeeecCceeEEEECCCC---C---EEEEeeCCCcEEEEec
Q 026765 176 LTYPSL--R-PLDTVVAHTAGCYCIAIDPMG---R---YFAVGSADSLVSLWDI 220 (233)
Q Consensus 176 ~~~~~~--~-~~~~~~~~~~~v~~i~~~p~~---~---~las~s~dg~v~iwd~ 220 (233)
+-+... + ....-..|..-|.+|+|-++. . ++++++-.|.+-+|++
T Consensus 192 Faf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 192 FAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred EEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 865431 1 111111255568899986644 2 7888999999999887
No 421
>PHA03098 kelch-like protein; Provisional
Probab=91.87 E-value=4 Score=34.97 Aligned_cols=143 Identities=14% Similarity=0.134 Sum_probs=66.6
Q ss_pred CCEEEEEeCCC------eEEEEECCCCeeeeeeeecCC--eeEEEECCCCCeEEEEcCC-----CcEEEEEcCCCeeeee
Q 026765 79 ADLIATASGDK------TVRLWDARSGKCSQQAELSGE--NINITYKPDGTHIAVGNRD-----DELTILDVRKFKPIHR 145 (233)
Q Consensus 79 ~~~l~sg~~d~------~i~iwd~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~d-----~~i~i~d~~~~~~~~~ 145 (233)
..+++.||.++ .+..||..+.+....-....+ ...++ .-++..++.||.+ ..+..||..+.+....
T Consensus 295 ~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~~~~-~~~~~lyv~GG~~~~~~~~~v~~yd~~~~~W~~~ 373 (534)
T PHA03098 295 NVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNPGVT-VFNNRIYVIGGIYNSISLNTVESWKPGESKWREE 373 (534)
T ss_pred CEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccceEE-EECCEEEEEeCCCCCEecceEEEEcCCCCceeeC
Confidence 35666776543 467788877665332111111 11122 2256666777765 2466788765443321
Q ss_pred eecCcee-eEEEECCCCCEEEEEeCC------CeEEEEecCCc--eeeeEEeeecCceeEEEECCCCCEEEEeeCCC---
Q 026765 146 RKFGYEV-NEIAWNMTGEMFFLTTGN------GTVEVLTYPSL--RPLDTVVAHTAGCYCIAIDPMGRYFAVGSADS--- 213 (233)
Q Consensus 146 ~~~~~~~-~~~~~~~~~~~~~~~~~~------~~v~~~~~~~~--~~~~~~~~~~~~v~~i~~~p~~~~las~s~dg--- 213 (233)
.....+. .......+++.++.|+.+ ..+..||..+. .....+...... .++ ...++..++.|+.+.
T Consensus 374 ~~lp~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~-~~~-~~~~~~iyv~GG~~~~~~ 451 (534)
T PHA03098 374 PPLIFPRYNPCVVNVNNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYG-GCA-IYHDGKIYVIGGISYIDN 451 (534)
T ss_pred CCcCcCCccceEEEECCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccC-ceE-EEECCEEEEECCccCCCC
Confidence 1111111 111112356666666531 35677776542 222111100011 111 223456667776432
Q ss_pred -----cEEEEecCCcE
Q 026765 214 -----LVSLWDISEML 224 (233)
Q Consensus 214 -----~v~iwd~~~~~ 224 (233)
.+.+||..+.+
T Consensus 452 ~~~~~~v~~yd~~~~~ 467 (534)
T PHA03098 452 IKVYNIVESYNPVTNK 467 (534)
T ss_pred CcccceEEEecCCCCc
Confidence 37888877553
No 422
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=91.56 E-value=2 Score=36.17 Aligned_cols=81 Identities=15% Similarity=0.182 Sum_probs=51.5
Q ss_pred cccEEEEEECcCCCEEEEEeCCCCEEEEecccCC--------CCceeeEE--------EecCcCcEEEEEEcCCC--CCE
Q 026765 20 KKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHG--------HGKVKDIE--------LRGHADSVDQLCWDPKH--ADL 81 (233)
Q Consensus 20 ~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~--------~~~~~~~~--------~~~h~~~v~~~~~~~~~--~~~ 81 (233)
.-.|..+..++.|..++-+|.||.+.++=....+ ...+.+.. .+...-.+..++|+|+. ...
T Consensus 103 ~feV~~vl~s~~GS~VaL~G~~Gi~vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~h 182 (741)
T KOG4460|consen 103 LFEVYQVLLSPTGSHVALIGIKGLMVMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDPH 182 (741)
T ss_pred eEEEEEEEecCCCceEEEecCCeeEEEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCce
Confidence 4468889999999999999999998876422111 11111111 11111235677899975 334
Q ss_pred EEEEeCCCeEEEEECCCCe
Q 026765 82 IATASGDKTVRLWDARSGK 100 (233)
Q Consensus 82 l~sg~~d~~i~iwd~~~~~ 100 (233)
|..-..|..||+||+...+
T Consensus 183 L~iL~sdnviRiy~lS~~t 201 (741)
T KOG4460|consen 183 LVLLTSDNVIRIYSLSEPT 201 (741)
T ss_pred EEEEecCcEEEEEecCCcc
Confidence 4556789999999986543
No 423
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=91.52 E-value=2.3 Score=30.42 Aligned_cols=31 Identities=23% Similarity=0.277 Sum_probs=26.1
Q ss_pred CceeEEEECCCC------CEEEEeeCCCcEEEEecCC
Q 026765 192 AGCYCIAIDPMG------RYFAVGSADSLVSLWDISE 222 (233)
Q Consensus 192 ~~v~~i~~~p~~------~~las~s~dg~v~iwd~~~ 222 (233)
..+..++|||.| -+||+-..++.|.||....
T Consensus 86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~ 122 (173)
T PF12657_consen 86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG 122 (173)
T ss_pred ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence 368899999966 2799999999999998764
No 424
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=91.46 E-value=4.5 Score=29.98 Aligned_cols=103 Identities=15% Similarity=0.241 Sum_probs=62.0
Q ss_pred CeEEEEcCCCcEEEEEcCC--CeeeeeeecCceeeEEEECCCCCEEEEEeCC---C---eEEEE-ecCCc----eeee-E
Q 026765 121 THIAVGNRDDELTILDVRK--FKPIHRRKFGYEVNEIAWNMTGEMFFLTTGN---G---TVEVL-TYPSL----RPLD-T 186 (233)
Q Consensus 121 ~~l~~~~~d~~i~i~d~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~---~v~~~-~~~~~----~~~~-~ 186 (233)
..|.++....+|.+|++.. .+.......-..+..+..+..|+++++--.+ . .+++| +++.. .++. .
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~v~vR 108 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLLCTFSTVGRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSPVRVR 108 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCceeEEEcchhheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcccCCcEEEE
Confidence 4555556677899999873 3334444444578899999999999876432 2 55666 33211 2222 2
Q ss_pred Eeee---------------------cCceeEEEECCCCCEEEEeeCCCcEEEEecCCcE
Q 026765 187 VVAH---------------------TAGCYCIAIDPMGRYFAVGSADSLVSLWDISEML 224 (233)
Q Consensus 187 ~~~~---------------------~~~v~~i~~~p~~~~las~s~dg~v~iwd~~~~~ 224 (233)
+.|| ..++.+++..|-..-|+.|+ ++++.||.+....
T Consensus 109 iaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~-~~~l~lf~l~~~~ 166 (215)
T PF14761_consen 109 IAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGC-GNKLVLFTLKYQT 166 (215)
T ss_pred EcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEc-CCEEEEEEEEEEE
Confidence 2232 23567888887554555554 5678888876543
No 425
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.10 E-value=10 Score=33.60 Aligned_cols=39 Identities=15% Similarity=0.229 Sum_probs=30.8
Q ss_pred CceeEEEECCCCCEEEEeeCCCcEEEEecCCcEEEEeee
Q 026765 192 AGCYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFT 230 (233)
Q Consensus 192 ~~v~~i~~~p~~~~las~s~dg~v~iwd~~~~~~i~~~~ 230 (233)
+.+..+..||+.++||--...|.|.+-.++..++..+|.
T Consensus 217 ~~~~ki~VS~n~~~laLyt~~G~i~~vs~D~~~~lce~~ 255 (829)
T KOG2280|consen 217 SSVVKISVSPNRRFLALYTETGKIWVVSIDLSQILCEFN 255 (829)
T ss_pred ceEEEEEEcCCcceEEEEecCCcEEEEecchhhhhhccC
Confidence 345678899999999999999999998887666555543
No 426
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=91.01 E-value=3.6 Score=28.02 Aligned_cols=110 Identities=16% Similarity=0.217 Sum_probs=61.2
Q ss_pred EEcCCCCCEEEEEeCCCeEEEEECCCC--------eeeeeeeecCCeeEEE---ECC--CCCeEEEEcCCCcEEEEEcCC
Q 026765 73 CWDPKHADLIATASGDKTVRLWDARSG--------KCSQQAELSGENINIT---YKP--DGTHIAVGNRDDELTILDVRK 139 (233)
Q Consensus 73 ~~~~~~~~~l~sg~~d~~i~iwd~~~~--------~~~~~~~~~~~~~~~~---~~~--~~~~l~~~~~d~~i~i~d~~~ 139 (233)
.|....+ .|+.+..-+.|.|++.... ..+..+.....+.+++ +.| +...|+.|+ ...+..||+..
T Consensus 5 kfDG~~p-cL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LNin~~italaaG~l~~~~~~D~LliGt-~t~llaYDV~~ 82 (136)
T PF14781_consen 5 KFDGVHP-CLACATTGGKVFIHNPHERGQRTGRQDSDISFLNINQEITALAAGRLKPDDGRDCLLIGT-QTSLLAYDVEN 82 (136)
T ss_pred EeCCCce-eEEEEecCCEEEEECCCccccccccccCceeEEECCCceEEEEEEecCCCCCcCEEEEec-cceEEEEEccc
Confidence 3444333 4566667778888876432 1234444555555543 433 234555555 44689999987
Q ss_pred CeeeeeeecCceeeEEEECC---CCCEEEEEeCCCeEEEEecCCceee
Q 026765 140 FKPIHRRKFGYEVNEIAWNM---TGEMFFLTTGNGTVEVLTYPSLRPL 184 (233)
Q Consensus 140 ~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~v~~~~~~~~~~~ 184 (233)
...+.-......++++.+.. ....++..+++..+.-+|.+-.+.+
T Consensus 83 N~d~Fyke~~DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G~e~f 130 (136)
T PF14781_consen 83 NSDLFYKEVPDGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEGNEIF 130 (136)
T ss_pred CchhhhhhCccceeEEEEEecCCCCCcEEEECceEEEEEeCCCCcEEE
Confidence 65554444445566665532 2334566666667777665544433
No 427
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=91.00 E-value=1.2 Score=22.71 Aligned_cols=29 Identities=17% Similarity=0.243 Sum_probs=18.9
Q ss_pred ecCceeEEEECCCCCEEEEee-CC--CcEEEE
Q 026765 190 HTAGCYCIAIDPMGRYFAVGS-AD--SLVSLW 218 (233)
Q Consensus 190 ~~~~v~~i~~~p~~~~las~s-~d--g~v~iw 218 (233)
....-...+|+|||++|+-.+ .+ |.-.||
T Consensus 7 ~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 7 SPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred CCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 334456789999999877554 45 666665
No 428
>PHA02790 Kelch-like protein; Provisional
Probab=90.95 E-value=7.6 Score=32.88 Aligned_cols=62 Identities=5% Similarity=-0.118 Sum_probs=32.1
Q ss_pred CCEEEEEeCCC---eEEEEECCCCeeeeeeeecCCee-EEEECCCCCeEEEEcCCCcEEEEEcCCCeee
Q 026765 79 ADLIATASGDK---TVRLWDARSGKCSQQAELSGENI-NITYKPDGTHIAVGNRDDELTILDVRKFKPI 143 (233)
Q Consensus 79 ~~~l~sg~~d~---~i~iwd~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~ 143 (233)
+++.+.||.++ .+..||.++.+.........+.. ..+..-+++..+.|+ ...+||.++.+..
T Consensus 363 g~IYviGG~~~~~~~ve~ydp~~~~W~~~~~m~~~r~~~~~~~~~~~IYv~GG---~~e~ydp~~~~W~ 428 (480)
T PHA02790 363 NVIYVIGGHSETDTTTEYLLPNHDQWQFGPSTYYPHYKSCALVFGRRLFLVGR---NAEFYCESSNTWT 428 (480)
T ss_pred CEEEEecCcCCCCccEEEEeCCCCEEEeCCCCCCccccceEEEECCEEEEECC---ceEEecCCCCcEe
Confidence 45667777653 46678887766543222111111 111123455555553 4677888765443
No 429
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=90.50 E-value=1.5 Score=22.68 Aligned_cols=39 Identities=28% Similarity=0.359 Sum_probs=25.4
Q ss_pred CCCCeEEEEc-CCCcEEEEEcCCCeeeeeeecCceeeEEE
Q 026765 118 PDGTHIAVGN-RDDELTILDVRKFKPIHRRKFGYEVNEIA 156 (233)
Q Consensus 118 ~~~~~l~~~~-~d~~i~i~d~~~~~~~~~~~~~~~~~~~~ 156 (233)
|+++++.++. .++.+.++|..+.+.+.....+.....+.
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~vg~~P~~i~ 40 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPVGGYPFGVA 40 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEEECCCCCceEE
Confidence 5667666544 56889999998777766665544343433
No 430
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=90.49 E-value=0.033 Score=45.69 Aligned_cols=134 Identities=19% Similarity=0.277 Sum_probs=85.4
Q ss_pred EEEEECcCCCEEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeee
Q 026765 24 HSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQ 103 (233)
Q Consensus 24 ~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~ 103 (233)
....|-|.+.-|+.++.+-.|+.||-.. + ... +. ..+.....++|+.++..+++-+-..+.+.+||+.+.. .+
T Consensus 38 i~~~w~~e~~nlavaca~tiv~~YD~ag--q-~~l--e~-n~tg~aldm~wDkegdvlavlAek~~piylwd~n~ey-tq 110 (615)
T KOG2247|consen 38 IIHRWRPEGHNLAVACANTIVIYYDKAG--Q-VIL--EL-NPTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEY-TQ 110 (615)
T ss_pred ceeeEecCCCceehhhhhhHHHhhhhhc--c-eec--cc-CCchhHhhhhhccccchhhhhhhcCCCeeechhhhhh-HH
Confidence 3456778887799999999999998432 1 111 11 2344566788888777777778888999999997543 22
Q ss_pred eeeecCCee--EEEECCCCCeEEEEcCCCcEEEEEcCCCeeeeee-ecCceeeEEEECCCCCEE
Q 026765 104 QAELSGENI--NITYKPDGTHIAVGNRDDELTILDVRKFKPIHRR-KFGYEVNEIAWNMTGEMF 164 (233)
Q Consensus 104 ~~~~~~~~~--~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 164 (233)
+++..+... -+.|++....++.+...+.+.+++.+..+.+... ++...+.+.+|.+.+..+
T Consensus 111 qLE~gg~~s~sll~wsKg~~el~ig~~~gn~viynhgtsR~iiv~Gkh~RRgtq~av~lEd~vi 174 (615)
T KOG2247|consen 111 QLESGGTSSKSLLAWSKGTPELVIGNNAGNIVIYNHGTSRRIIVMGKHQRRGTQIAVTLEDYVI 174 (615)
T ss_pred HHhccCcchHHHHhhccCCccccccccccceEEEeccchhhhhhhcccccceeEEEecccceee
Confidence 222222111 1567888888888888888999987654443222 233455666666655433
No 431
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=90.18 E-value=7 Score=33.03 Aligned_cols=118 Identities=20% Similarity=0.222 Sum_probs=63.4
Q ss_pred eeeeCccccEEEEEECcCCC-------EEEEEeCCCCEEEEecccCCCCceeeEEEecCc--CcEEEEEEcCCCCCEEEE
Q 026765 14 REYTGHKKKVHSVAWNCTGT-------KLASGSVDQTARVWHIEPHGHGKVKDIELRGHA--DSVDQLCWDPKHADLIAT 84 (233)
Q Consensus 14 ~~~~~H~~~V~~~~~~~~~~-------~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~--~~v~~~~~~~~~~~~l~s 84 (233)
.++.-|... -+.|+|..+ .-+.|-+|..|---|+...+ .++...+.+... ....+... ..+.+++.
T Consensus 504 eeW~~~ddv--vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~g-NKi~v~esKdY~tKn~Fss~~t--TesGyIa~ 578 (776)
T COG5167 504 EEWDLKDDV--VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARG-NKIKVVESKDYKTKNKFSSGMT--TESGYIAA 578 (776)
T ss_pred eEeecCCcc--eeecCCchhHHhcCccceEEeecccceEEecccccC-Cceeeeeehhcccccccccccc--ccCceEEE
Confidence 345555444 678888643 33456567766444443322 233333333221 12222222 22457899
Q ss_pred EeCCCeEEEEECCCCeeeeeee-ecCCeeEEEECCCCCeEEEEcCCCcEEEEEc
Q 026765 85 ASGDKTVRLWDARSGKCSQQAE-LSGENINITYKPDGTHIAVGNRDDELTILDV 137 (233)
Q Consensus 85 g~~d~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~ 137 (233)
|+..|.|++||--..+....+. +...+.-+....+|+++++.+.. .+.+.|+
T Consensus 579 as~kGDirLyDRig~rAKtalP~lG~aIk~idvta~Gk~ilaTCk~-yllL~d~ 631 (776)
T COG5167 579 ASRKGDIRLYDRIGKRAKTALPGLGDAIKHIDVTANGKHILATCKN-YLLLTDV 631 (776)
T ss_pred ecCCCceeeehhhcchhhhcCcccccceeeeEeecCCcEEEEeecc-eEEEEec
Confidence 9999999999954332211111 23344557778899988766644 4666665
No 432
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=90.03 E-value=9.3 Score=31.17 Aligned_cols=147 Identities=13% Similarity=0.170 Sum_probs=71.9
Q ss_pred EEcCCCCCEEEEEeCCCeE--EEEECCCCeeeeeeeecCC-eeEEEECCCCCeEEEEcCCCcEEEEEcCCCeeeeeeecC
Q 026765 73 CWDPKHADLIATASGDKTV--RLWDARSGKCSQQAELSGE-NINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFG 149 (233)
Q Consensus 73 ~~~~~~~~~l~sg~~d~~i--~iwd~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~ 149 (233)
+|.+++.++|+++..|+.- .+-|+.+++..+.....+. .....++|+++.++-......+.-.|+++.+....+...
T Consensus 42 ~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vdL~T~e~~~vy~~p 121 (386)
T PF14583_consen 42 CFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDDRALYYVKNGRSLRRVDLDTLEERVVYEVP 121 (386)
T ss_dssp -B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTSSEEEEEETTTEEEEEETTT--EEEEEE--
T ss_pred CcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCCCeEEEEECCCeEEEEECCcCcEEEEEECC
Confidence 6777887888888777754 4557888776554443322 224566788887765555567888898876543333322
Q ss_pred ce-eeEEEE--CCCCCEEEEEeC-----------------------CCeEEEEecCCceeeeEEeeecCceeEEEECCCC
Q 026765 150 YE-VNEIAW--NMTGEMFFLTTG-----------------------NGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMG 203 (233)
Q Consensus 150 ~~-~~~~~~--~~~~~~~~~~~~-----------------------~~~v~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~ 203 (233)
.. .....| +.++..++ +.. ...+..+++.+++.. .+..-...+..+.|+|..
T Consensus 122 ~~~~g~gt~v~n~d~t~~~-g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~-~v~~~~~wlgH~~fsP~d 199 (386)
T PF14583_consen 122 DDWKGYGTWVANSDCTKLV-GIEISREDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERK-VVFEDTDWLGHVQFSPTD 199 (386)
T ss_dssp TTEEEEEEEEE-TTSSEEE-EEEEEGGG-----SHHHHHHHHHC---EEEEEEETTT--EE-EEEEESS-EEEEEEETTE
T ss_pred cccccccceeeCCCccEEE-EEEEeehhccCccccHHHHHHHhhCCCceEEEEECCCCcee-EEEecCccccCcccCCCC
Confidence 11 111222 33444432 211 123444455555432 222234566788999988
Q ss_pred CEEEEeeCCC----c-EEEEecC
Q 026765 204 RYFAVGSADS----L-VSLWDIS 221 (233)
Q Consensus 204 ~~las~s~dg----~-v~iwd~~ 221 (233)
..+++=+..| . -|||-++
T Consensus 200 p~li~fCHEGpw~~Vd~RiW~i~ 222 (386)
T PF14583_consen 200 PTLIMFCHEGPWDLVDQRIWTIN 222 (386)
T ss_dssp EEEEEEEE-S-TTTSS-SEEEEE
T ss_pred CCEEEEeccCCcceeceEEEEEE
Confidence 7777665444 2 4788775
No 433
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=89.93 E-value=14 Score=33.07 Aligned_cols=80 Identities=20% Similarity=0.276 Sum_probs=52.3
Q ss_pred ccEEEEEECcCCCEEEEEeCCCCEEEEecccCC--------CCceeeEEE--------ecCcCcEEEEEEcCCC--CCEE
Q 026765 21 KKVHSVAWNCTGTKLASGSVDQTARVWHIEPHG--------HGKVKDIEL--------RGHADSVDQLCWDPKH--ADLI 82 (233)
Q Consensus 21 ~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~--------~~~~~~~~~--------~~h~~~v~~~~~~~~~--~~~l 82 (233)
-.|..|..||.|++||-.|..+.+.+.=....+ ...+.+..+ ..+...|..+.|+|.+ ...|
T Consensus 85 f~v~~i~~n~~g~~lal~G~~~v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~l 164 (717)
T PF10168_consen 85 FEVHQISLNPTGSLLALVGPRGVVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSHL 164 (717)
T ss_pred eeEEEEEECCCCCEEEEEcCCcEEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCeE
Confidence 468999999999999999886655553221100 011111111 2344578999999974 3455
Q ss_pred EEEeCCCeEEEEECCCCe
Q 026765 83 ATASGDKTVRLWDARSGK 100 (233)
Q Consensus 83 ~sg~~d~~i~iwd~~~~~ 100 (233)
+.=..|+++|+||+...+
T Consensus 165 ~vLtsdn~lR~y~~~~~~ 182 (717)
T PF10168_consen 165 VVLTSDNTLRLYDISDPQ 182 (717)
T ss_pred EEEecCCEEEEEecCCCC
Confidence 667889999999997543
No 434
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=89.93 E-value=15 Score=33.56 Aligned_cols=149 Identities=6% Similarity=0.054 Sum_probs=86.6
Q ss_pred EEEEEEcCCCCCEEEEEeC----------CCeEEEEECCC-Ce--eeeeeeecCCeeEEEECCCCCeEEEEcCCCcEEEE
Q 026765 69 VDQLCWDPKHADLIATASG----------DKTVRLWDARS-GK--CSQQAELSGENINITYKPDGTHIAVGNRDDELTIL 135 (233)
Q Consensus 69 v~~~~~~~~~~~~l~sg~~----------d~~i~iwd~~~-~~--~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~ 135 (233)
+.++.|..+...+++.|.. .|.|.++.... ++ ........+.+.++.. -+|+++| +-...+++|
T Consensus 777 i~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e~~~L~~v~e~~v~Gav~aL~~-fngkllA--~In~~vrLy 853 (1096)
T KOG1897|consen 777 IISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEELNSLELVAETVVKGAVYALVE-FNGKLLA--GINQSVRLY 853 (1096)
T ss_pred eeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEecCCceeeeeeeeeccceeehhh-hCCeEEE--ecCcEEEEE
Confidence 4445576554455555532 46777776655 22 2233334444444332 2566665 345679999
Q ss_pred EcCCCeeeee-eecCceeeEEEECCCCCEEEEEeCCCeEEEEecCCceeee-EEe--eecCceeEEEECCCCCEEEEeeC
Q 026765 136 DVRKFKPIHR-RKFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLD-TVV--AHTAGCYCIAIDPMGRYFAVGSA 211 (233)
Q Consensus 136 d~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~-~~~--~~~~~v~~i~~~p~~~~las~s~ 211 (233)
+....+.++. .....++..+...-.++.+++|.--+.+.+..++..+-.. .+. .+..+.+++.+= ++..++.+-.
T Consensus 854 e~t~~~eLr~e~~~~~~~~aL~l~v~gdeI~VgDlm~Sitll~y~~~eg~f~evArD~~p~Wmtaveil-~~d~ylgae~ 932 (1096)
T KOG1897|consen 854 EWTTERELRIECNISNPIIALDLQVKGDEIAVGDLMRSITLLQYKGDEGNFEEVARDYNPNWMTAVEIL-DDDTYLGAEN 932 (1096)
T ss_pred EccccceehhhhcccCCeEEEEEEecCcEEEEeeccceEEEEEEeccCCceEEeehhhCccceeeEEEe-cCceEEeecc
Confidence 9876643322 2233466777777789999999988888888776544211 111 245556666654 3455556667
Q ss_pred CCcEEEEecC
Q 026765 212 DSLVSLWDIS 221 (233)
Q Consensus 212 dg~v~iwd~~ 221 (233)
+|.+.+-..+
T Consensus 933 ~gNlf~v~~d 942 (1096)
T KOG1897|consen 933 SGNLFTVRKD 942 (1096)
T ss_pred cccEEEEEec
Confidence 7777666554
No 435
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=89.76 E-value=4.8 Score=27.45 Aligned_cols=114 Identities=10% Similarity=0.072 Sum_probs=62.2
Q ss_pred EEEEECcCCCEEEEEeCCCCEEEEecccCCCC---ceeeEEEecCcCcEEEEEEcC----CCCCEEEEEeCCCeEEEEEC
Q 026765 24 HSVAWNCTGTKLASGSVDQTARVWHIEPHGHG---KVKDIELRGHADSVDQLCWDP----KHADLIATASGDKTVRLWDA 96 (233)
Q Consensus 24 ~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~---~~~~~~~~~h~~~v~~~~~~~----~~~~~l~sg~~d~~i~iwd~ 96 (233)
..-.|+.....|+.+..-++|.|.+....... .-..+.+-.-...|++++-.+ ++...|+.|+ ...+..||+
T Consensus 2 aiGkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LNin~~italaaG~l~~~~~~D~LliGt-~t~llaYDV 80 (136)
T PF14781_consen 2 AIGKFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLNINQEITALAAGRLKPDDGRDCLLIGT-QTSLLAYDV 80 (136)
T ss_pred eEEEeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEECCCceEEEEEEecCCCCCcCEEEEec-cceEEEEEc
Confidence 44567777778888888999999986532210 001112223445677775433 2345666654 567999999
Q ss_pred CCCeeeeeeeecCCeeEEEE---CCCCCeEEEEcCCCcEEEEEcC
Q 026765 97 RSGKCSQQAELSGENINITY---KPDGTHIAVGNRDDELTILDVR 138 (233)
Q Consensus 97 ~~~~~~~~~~~~~~~~~~~~---~~~~~~l~~~~~d~~i~i~d~~ 138 (233)
....-....+.+..+.++.+ .....-++..+.+-.|.-||..
T Consensus 81 ~~N~d~Fyke~~DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~ 125 (136)
T PF14781_consen 81 ENNSDLFYKEVPDGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYE 125 (136)
T ss_pred ccCchhhhhhCccceeEEEEEecCCCCCcEEEECceEEEEEeCCC
Confidence 87654444344444444433 2222233333434455556544
No 436
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.52 E-value=4.8 Score=33.45 Aligned_cols=85 Identities=13% Similarity=0.268 Sum_probs=53.1
Q ss_pred CCccceeeeCccccEEEEEECcCCCEEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCC
Q 026765 9 KNLHSREYTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGD 88 (233)
Q Consensus 9 ~~~~~~~~~~H~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d 88 (233)
.+..+..-....++|.++.|++|.+.||.--.|++|...+..+.........+.+..+..|....|..+ ..+ +--. +
T Consensus 55 dDVpiSfdm~d~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~~s-~e~-A~i~-~ 131 (657)
T KOG2377|consen 55 DDVPISFDMDDKGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCWTSS-TEI-AFIT-D 131 (657)
T ss_pred CCCCceeeecCCCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHhccCcceeEEEEEecC-eeE-EEEe-c
Confidence 344444445678899999999999999999999999999874422211111122233456888888754 333 2222 3
Q ss_pred CeEEEEEC
Q 026765 89 KTVRLWDA 96 (233)
Q Consensus 89 ~~i~iwd~ 96 (233)
.-+-+|-.
T Consensus 132 ~G~e~y~v 139 (657)
T KOG2377|consen 132 QGIEFYQV 139 (657)
T ss_pred CCeEEEEE
Confidence 33566654
No 437
>PF12341 DUF3639: Protein of unknown function (DUF3639) ; InterPro: IPR022100 This domain family is found in eukaryotes, and is approximately 30 amino acids in length. The family is found in association with PF00400 from PFAM. There are two completely conserved residues (E and R) that may be functionally important.
Probab=89.14 E-value=1.4 Score=20.77 Aligned_cols=26 Identities=15% Similarity=0.289 Sum_probs=21.0
Q ss_pred CceeEEEECCCCCEEEEeeCCCcEEEEe
Q 026765 192 AGCYCIAIDPMGRYFAVGSADSLVSLWD 219 (233)
Q Consensus 192 ~~v~~i~~~p~~~~las~s~dg~v~iwd 219 (233)
+.|.+++.++ .+++.+..-+.+|||.
T Consensus 2 E~i~aia~g~--~~vavaTS~~~lRifs 27 (27)
T PF12341_consen 2 EEIEAIAAGD--SWVAVATSAGYLRIFS 27 (27)
T ss_pred ceEEEEEccC--CEEEEEeCCCeEEecC
Confidence 4577888876 4999999999999984
No 438
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=88.96 E-value=17 Score=32.90 Aligned_cols=110 Identities=12% Similarity=0.183 Sum_probs=65.2
Q ss_pred CCeEEEEcCCCcEEEEEcCCCeeeeeeecCcee---------eEEEEC----------------CCCCEEEEEeCCCeEE
Q 026765 120 GTHIAVGNRDDELTILDVRKFKPIHRRKFGYEV---------NEIAWN----------------MTGEMFFLTTGNGTVE 174 (233)
Q Consensus 120 ~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~---------~~~~~~----------------~~~~~~~~~~~~~~v~ 174 (233)
+..+..++.++.+.-+|.++++.+......... ..+.+. ..++.++.++.|+.+.
T Consensus 194 gg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~Li 273 (764)
T TIGR03074 194 GDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARLI 273 (764)
T ss_pred CCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeEE
Confidence 345666666777777777776665554432211 111111 1345788888999999
Q ss_pred EEecCCceeeeEEeeecCce-------------eEEEECC--CCCEEEEeeC----------CCcEEEEecCCcEEEEee
Q 026765 175 VLTYPSLRPLDTVVAHTAGC-------------YCIAIDP--MGRYFAVGSA----------DSLVSLWDISEMLCVRTF 229 (233)
Q Consensus 175 ~~~~~~~~~~~~~~~~~~~v-------------~~i~~~p--~~~~las~s~----------dg~v~iwd~~~~~~i~~~ 229 (233)
-+|.++++..-.+... ..| ..+.-.| .+..++.|+. +|.|+-+|+++|+.+=+|
T Consensus 274 ALDA~TGk~~W~fg~~-G~vdl~~~~g~~~~g~~~~ts~P~V~~g~VIvG~~v~d~~~~~~~~G~I~A~Da~TGkl~W~~ 352 (764)
T TIGR03074 274 ALDADTGKLCEDFGNN-GTVDLTAGMGTTPPGYYYPTSPPLVAGTTVVIGGRVADNYSTDEPSGVIRAFDVNTGALVWAW 352 (764)
T ss_pred EEECCCCCEEEEecCC-CceeeecccCcCCCcccccccCCEEECCEEEEEecccccccccCCCcEEEEEECCCCcEeeEE
Confidence 9999998887654321 111 0111112 1235555542 688999999999987665
Q ss_pred e
Q 026765 230 T 230 (233)
Q Consensus 230 ~ 230 (233)
.
T Consensus 353 ~ 353 (764)
T TIGR03074 353 D 353 (764)
T ss_pred e
Confidence 4
No 439
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=88.93 E-value=3.8 Score=30.38 Aligned_cols=49 Identities=16% Similarity=0.205 Sum_probs=35.8
Q ss_pred CEEEEEeCCCeEEEEecC--CceeeeEEeeecCceeEEEECCCCCEEEEeeC
Q 026765 162 EMFFLTTGNGTVEVLTYP--SLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSA 211 (233)
Q Consensus 162 ~~~~~~~~~~~v~~~~~~--~~~~~~~~~~~~~~v~~i~~~p~~~~las~s~ 211 (233)
+.+.++.+.+.|.+|++. ..++...|..- +.|..+.++..|+||+|-=.
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv-~~V~~l~y~~~GDYlvTlE~ 79 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLLCTFSTV-GRVLQLVYSEAGDYLVTLEE 79 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCceeEEEcch-hheeEEEeccccceEEEEEe
Confidence 455555778889999987 33444455433 67889999999999998543
No 440
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=88.42 E-value=10 Score=29.57 Aligned_cols=97 Identities=14% Similarity=0.206 Sum_probs=59.8
Q ss_pred EEECCCCCe-EEEEcCCCc-EEEEEcCCCeeeeee---ecCceeeEEEECCCCCEEEEEeC-----CCeEEEEecCC-ce
Q 026765 114 ITYKPDGTH-IAVGNRDDE-LTILDVRKFKPIHRR---KFGYEVNEIAWNMTGEMFFLTTG-----NGTVEVLTYPS-LR 182 (233)
Q Consensus 114 ~~~~~~~~~-l~~~~~d~~-i~i~d~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~-----~~~v~~~~~~~-~~ 182 (233)
+.++|.... ++.+-.=|+ ..++|....+..... +..+--..=.|+++|.++.+.-. .|.|-+||.+. .+
T Consensus 73 i~~~p~~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGvfs~dG~~LYATEndfd~~rGViGvYd~r~~fq 152 (366)
T COG3490 73 IAFHPALPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGVFSPDGRLLYATENDFDPNRGVIGVYDAREGFQ 152 (366)
T ss_pred eecCCCCcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccccCCCCcEEEeecCCCCCCCceEEEEecccccc
Confidence 455554333 222222233 456776544332221 11122334468999999887644 37899999863 34
Q ss_pred eeeEEeeecCceeEEEECCCCCEEEEee
Q 026765 183 PLDTVVAHTAGCYCIAIDPMGRYFAVGS 210 (233)
Q Consensus 183 ~~~~~~~~~~~v~~i~~~p~~~~las~s 210 (233)
.+..+..|.-....+.+.+||+.|+.+.
T Consensus 153 rvgE~~t~GiGpHev~lm~DGrtlvvan 180 (366)
T COG3490 153 RVGEFSTHGIGPHEVTLMADGRTLVVAN 180 (366)
T ss_pred eecccccCCcCcceeEEecCCcEEEEeC
Confidence 5666778888888999999999988764
No 441
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=87.67 E-value=9.6 Score=28.32 Aligned_cols=106 Identities=12% Similarity=0.139 Sum_probs=59.8
Q ss_pred CCEEEEEeCC--CeEEEEECCCCeeeeeeeecC-CeeEEEECCCCCeEE-EEcCCCcEEEEEcCCCeeeeeeecCceeeE
Q 026765 79 ADLIATASGD--KTVRLWDARSGKCSQQAELSG-ENINITYKPDGTHIA-VGNRDDELTILDVRKFKPIHRRKFGYEVNE 154 (233)
Q Consensus 79 ~~~l~sg~~d--~~i~iwd~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~-~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~ 154 (233)
++++.+.+.- ..|++||+.+++......... ....--...-+.++. ..=.++....+|.++.+.+.......+-
T Consensus 56 g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~~~FgEGit~~gd~~y~LTw~egvaf~~d~~t~~~lg~~~y~GeG-- 133 (262)
T COG3823 56 GHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPDTVFGEGITKLGDYFYQLTWKEGVAFKYDADTLEELGRFSYEGEG-- 133 (262)
T ss_pred CEEEEeccccccceeEEEeccCceEEEEeecCCccccccceeeccceEEEEEeccceeEEEChHHhhhhcccccCCcc--
Confidence 4666666553 468999999888665544331 111100111122332 2334566677887776665544433332
Q ss_pred EEECCCCCEEEEEeCCCeEEEEecCCceeeeE
Q 026765 155 IAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDT 186 (233)
Q Consensus 155 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 186 (233)
.....+++.++.+.+..+++.-|.++...+.+
T Consensus 134 WgLt~d~~~LimsdGsatL~frdP~tfa~~~~ 165 (262)
T COG3823 134 WGLTSDDKNLIMSDGSATLQFRDPKTFAELDT 165 (262)
T ss_pred eeeecCCcceEeeCCceEEEecCHHHhhhcce
Confidence 33345777788888888888777665544443
No 442
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=86.57 E-value=17 Score=30.19 Aligned_cols=121 Identities=14% Similarity=0.202 Sum_probs=58.9
Q ss_pred CCeEEEEECCCCeeeeeeeecCC---eeEEEEC--CCCCeEEEEc-CCCcEEEE-EcCCCee----eeeeec--------
Q 026765 88 DKTVRLWDARSGKCSQQAELSGE---NINITYK--PDGTHIAVGN-RDDELTIL-DVRKFKP----IHRRKF-------- 148 (233)
Q Consensus 88 d~~i~iwd~~~~~~~~~~~~~~~---~~~~~~~--~~~~~l~~~~-~d~~i~i~-d~~~~~~----~~~~~~-------- 148 (233)
-.++.+||+.+.+..+.+.+... +..+.|. |+..+=++++ ...+|..| .....+. +..+..
T Consensus 221 G~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~l 300 (461)
T PF05694_consen 221 GHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWIL 300 (461)
T ss_dssp --EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS--
T ss_pred cCeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccc
Confidence 36899999999999888887643 3456664 5555544333 33444433 3232221 111110
Q ss_pred ----------CceeeEEEECCCCCEEEEEe-CCCeEEEEecCCc---eeeeEEeee----------------cCceeEEE
Q 026765 149 ----------GYEVNEIAWNMTGEMFFLTT-GNGTVEVLTYPSL---RPLDTVVAH----------------TAGCYCIA 198 (233)
Q Consensus 149 ----------~~~~~~~~~~~~~~~~~~~~-~~~~v~~~~~~~~---~~~~~~~~~----------------~~~v~~i~ 198 (233)
..-++.+..+.|++++.+.+ ..|.++.||..+. +...++... .+...-+.
T Consensus 301 p~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~l~GgPqMvq 380 (461)
T PF05694_consen 301 PEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKRLRGGPQMVQ 380 (461)
T ss_dssp -GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS------S----EE
T ss_pred cccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccccCCCCCeEE
Confidence 12257888999999998886 5899999998642 222222110 11235678
Q ss_pred ECCCCCEEEE
Q 026765 199 IDPMGRYFAV 208 (233)
Q Consensus 199 ~~p~~~~las 208 (233)
.|.||+.|..
T Consensus 381 lS~DGkRlYv 390 (461)
T PF05694_consen 381 LSLDGKRLYV 390 (461)
T ss_dssp E-TTSSEEEE
T ss_pred EccCCeEEEE
Confidence 8889987643
No 443
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=86.43 E-value=15 Score=29.37 Aligned_cols=103 Identities=16% Similarity=0.199 Sum_probs=51.7
Q ss_pred CeeEEEECCCCCeEEEEcCCCcEEEEEcCCCe--eeeeee-----cCceeeEEEECCC----CCEEEEEeCC--------
Q 026765 110 ENINITYKPDGTHIAVGNRDDELTILDVRKFK--PIHRRK-----FGYEVNEIAWNMT----GEMFFLTTGN-------- 170 (233)
Q Consensus 110 ~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~--~~~~~~-----~~~~~~~~~~~~~----~~~~~~~~~~-------- 170 (233)
.+..++|.|+++.+++ ...|.|.+++..... .+.... .......++++|+ +.+.+..+..
T Consensus 3 ~P~~~a~~pdG~l~v~-e~~G~i~~~~~~g~~~~~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~~~~~~~~ 81 (331)
T PF07995_consen 3 NPRSMAFLPDGRLLVA-ERSGRIWVVDKDGSLKTPVADLPEVFADGERGLLGIAFHPDFASNGYLYVYYTNADEDGGDND 81 (331)
T ss_dssp SEEEEEEETTSCEEEE-ETTTEEEEEETTTEECEEEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-TSSSSEE
T ss_pred CceEEEEeCCCcEEEE-eCCceEEEEeCCCcCcceecccccccccccCCcccceeccccCCCCEEEEEEEcccCCCCCcc
Confidence 3567999999877665 458999999832221 122221 1234678889884 3344443421
Q ss_pred CeEEEEecCCc-------eeee-EEee---ecCceeEEEECCCCCEEEEeeCCC
Q 026765 171 GTVEVLTYPSL-------RPLD-TVVA---HTAGCYCIAIDPMGRYFAVGSADS 213 (233)
Q Consensus 171 ~~v~~~~~~~~-------~~~~-~~~~---~~~~v~~i~~~p~~~~las~s~dg 213 (233)
..+.-|..... +.+. .+.. .......++|.|+|.++++.+..+
T Consensus 82 ~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~~ 135 (331)
T PF07995_consen 82 NRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDGG 135 (331)
T ss_dssp EEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-TT
T ss_pred eeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCCC
Confidence 23333333222 1111 1111 122345799999997666555443
No 444
>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins. RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.
Probab=86.41 E-value=18 Score=30.06 Aligned_cols=31 Identities=23% Similarity=0.490 Sum_probs=25.3
Q ss_pred CceeEEEECCCCCEEEEeeCCCcEEEEecCC
Q 026765 192 AGCYCIAIDPMGRYFAVGSADSLVSLWDISE 222 (233)
Q Consensus 192 ~~v~~i~~~p~~~~las~s~dg~v~iwd~~~ 222 (233)
..|.+++..+..+.|.+.+.+|.|.+|++..
T Consensus 190 ~~I~~v~~d~~r~~ly~l~~~~~Iq~w~l~~ 220 (422)
T PF08801_consen 190 PKIVQVAVDPSRRLLYTLTSDGSIQVWDLGP 220 (422)
T ss_dssp --EEEEEEETTTTEEEEEESSE-EEEEEE-S
T ss_pred hceeeEEecCCcCEEEEEeCCCcEEEEEEeC
Confidence 3488999999989999999999999999974
No 445
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=85.98 E-value=4.4 Score=33.66 Aligned_cols=154 Identities=17% Similarity=0.135 Sum_probs=84.5
Q ss_pred cEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeeeeecC-Ce--e-----EEEECCCCCeEEEEcCCCcEEEE-EcC
Q 026765 68 SVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSG-EN--I-----NITYKPDGTHIAVGNRDDELTIL-DVR 138 (233)
Q Consensus 68 ~v~~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~-~~--~-----~~~~~~~~~~l~~~~~d~~i~i~-d~~ 138 (233)
.|..+-..|++. .++.-+. .++.++++.+.........+. +. . .+.....|.-+.++..||.+.-| |.+
T Consensus 222 ~v~qllL~Pdg~-~LYv~~g-~~~~v~~L~~r~l~~rkl~~dspg~~~~~Vte~l~lL~Gg~SLLv~~~dG~vsQWFdvr 299 (733)
T COG4590 222 DVSQLLLTPDGK-TLYVRTG-SELVVALLDKRSLQIRKLVDDSPGDSRHQVTEQLYLLSGGFSLLVVHEDGLVSQWFDVR 299 (733)
T ss_pred chHhhEECCCCC-EEEEecC-CeEEEEeecccccchhhhhhcCCCchHHHHHHHHHHHhCceeEEEEcCCCceeeeeeee
Confidence 455566778764 4433332 678888887654322111111 11 0 11122345667888889887665 554
Q ss_pred CCe-e----eeeeec-CceeeEEEECCCCCEEEEEeCCCeEEEEecCCceeeeEEeeecCceeEEEECCCCCEEEEeeCC
Q 026765 139 KFK-P----IHRRKF-GYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSAD 212 (233)
Q Consensus 139 ~~~-~----~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~las~s~d 212 (233)
... + +...+. +.++..+.-..+-+-+++-..+|++..+.....+.+.. ..--..+.-+++||.+.+|++- +.
T Consensus 300 ~~~~p~l~h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~lL~-~~~~~~~~~~~~Sp~~~~Ll~e-~~ 377 (733)
T COG4590 300 RDGQPHLNHIRNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLLLF-ERAYQAPQLVAMSPNQAYLLSE-DQ 377 (733)
T ss_pred cCCCCcceeeeccccCcccceeeccccccceEEEEcCCCceeeeecccCcceeh-hhhhcCcceeeeCcccchheee-cC
Confidence 321 1 111121 12333343334455677778888888876543333222 2122345678999999998854 45
Q ss_pred CcEEEEecCCcEE
Q 026765 213 SLVSLWDISEMLC 225 (233)
Q Consensus 213 g~v~iwd~~~~~~ 225 (233)
|+++++.++...+
T Consensus 378 gki~~~~l~Nr~P 390 (733)
T COG4590 378 GKIRLAQLENRNP 390 (733)
T ss_pred CceEEEEecCCCC
Confidence 7799998876543
No 446
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=85.81 E-value=15 Score=28.75 Aligned_cols=188 Identities=16% Similarity=0.258 Sum_probs=104.2
Q ss_pred eeCccccEEEEEECcCCCEEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCCeEEEEE
Q 026765 16 YTGHKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWD 95 (233)
Q Consensus 16 ~~~H~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~iwd 95 (233)
..|-++.|.++.|+|+.+.|++......-.||=- ..+ ..+..+.+.+-.++ -.+++... +.+.++-=.+..+.++-
T Consensus 81 i~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt-~~G-dlirtiPL~g~~Dp-E~Ieyig~-n~fvi~dER~~~l~~~~ 156 (316)
T COG3204 81 ILGETANVSSLTYNPDTRTLFAVTNKPAAIVELT-KEG-DLIRTIPLTGFSDP-ETIEYIGG-NQFVIVDERDRALYLFT 156 (316)
T ss_pred cccccccccceeeCCCcceEEEecCCCceEEEEe-cCC-ceEEEecccccCCh-hHeEEecC-CEEEEEehhcceEEEEE
Confidence 3455667999999999999988877777667632 211 12333344443222 22344433 34445555566666665
Q ss_pred CCCCeeee-----eeeecC------CeeEEEECCCCCeEEEEcCCCcEEEEEcCCCe-ee--eeee--------cCceee
Q 026765 96 ARSGKCSQ-----QAELSG------ENINITYKPDGTHIAVGNRDDELTILDVRKFK-PI--HRRK--------FGYEVN 153 (233)
Q Consensus 96 ~~~~~~~~-----~~~~~~------~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~-~~--~~~~--------~~~~~~ 153 (233)
+....... .+.+.. ....++|+|..+.+...-+..-+.||...... .. +... .-..+.
T Consensus 157 vd~~t~~~~~~~~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~~~~~l~~~~~~~~~~~~~~f~~DvS 236 (316)
T COG3204 157 VDADTTVISAKVQKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQSPSSLSVHASLDPTADRDLFVLDVS 236 (316)
T ss_pred EcCCccEEeccceEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEecCCcccccccccCcccccceEeeccc
Confidence 54432111 111111 12358999999999888888777777654221 11 0000 012355
Q ss_pred EEEECC-CCCEEEEEeCCCeEEEEecCCceeeeEEeeec---------CceeEEEECCCCCEEEE
Q 026765 154 EIAWNM-TGEMFFLTTGNGTVEVLTYPSLRPLDTVVAHT---------AGCYCIAIDPMGRYFAV 208 (233)
Q Consensus 154 ~~~~~~-~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~---------~~v~~i~~~p~~~~las 208 (233)
++.+++ .+.+++.+.+++.+.-.+.. ++++..+.-+. ...-.|+..++|...++
T Consensus 237 gl~~~~~~~~LLVLS~ESr~l~Evd~~-G~~~~~lsL~~g~~gL~~dipqaEGiamDd~g~lYIv 300 (316)
T COG3204 237 GLEFNAITNSLLVLSDESRRLLEVDLS-GEVIELLSLTKGNHGLSSDIPQAEGIAMDDDGNLYIV 300 (316)
T ss_pred cceecCCCCcEEEEecCCceEEEEecC-CCeeeeEEeccCCCCCcccCCCcceeEECCCCCEEEE
Confidence 666764 46677778888888777754 44443333221 12235777777765443
No 447
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=85.50 E-value=20 Score=29.98 Aligned_cols=113 Identities=14% Similarity=0.181 Sum_probs=69.6
Q ss_pred cCCeeEEEECCCCCeEEEEcCCCcEEEEEcCCCeeee----eeecC-ceeeEEEECCCCCEEEEEeCCCeEEEEecC-Cc
Q 026765 108 SGENINITYKPDGTHIAVGNRDDELTILDVRKFKPIH----RRKFG-YEVNEIAWNMTGEMFFLTTGNGTVEVLTYP-SL 181 (233)
Q Consensus 108 ~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~----~~~~~-~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~-~~ 181 (233)
.+++.++.|++|.+.+|+-..+..+.+++....++.. ..+.+ ..+....|+.+ .-++.....| +.+|... ..
T Consensus 66 ~G~I~SIkFSlDnkilAVQR~~~~v~f~nf~~d~~~l~~~~~ck~k~~~IlGF~W~~s-~e~A~i~~~G-~e~y~v~pek 143 (657)
T KOG2377|consen 66 KGEIKSIKFSLDNKILAVQRTSKTVDFCNFIPDNSQLEYTQECKTKNANILGFCWTSS-TEIAFITDQG-IEFYQVLPEK 143 (657)
T ss_pred CCceeEEEeccCcceEEEEecCceEEEEecCCCchhhHHHHHhccCcceeEEEEEecC-eeEEEEecCC-eEEEEEchhh
Confidence 3567789999999999999999999998864333221 12222 23777888765 3344433333 4555443 23
Q ss_pred eeeeEEeeecCceeEEEECCCCCEE--EEeeCCCcEEEEecCC
Q 026765 182 RPLDTVVAHTAGCYCIAIDPMGRYF--AVGSADSLVSLWDISE 222 (233)
Q Consensus 182 ~~~~~~~~~~~~v~~i~~~p~~~~l--as~s~dg~v~iwd~~~ 222 (233)
+.++....|...|+--.|.|+.+.+ +++-..++..=+-+++
T Consensus 144 rslRlVks~~~nvnWy~yc~et~v~LL~t~~~~n~lnpf~~~~ 186 (657)
T KOG2377|consen 144 RSLRLVKSHNLNVNWYMYCPETAVILLSTTVLENVLNPFHFRA 186 (657)
T ss_pred hhhhhhhhcccCccEEEEccccceEeeeccccccccccEEEee
Confidence 4455556678888888898887753 3332444444444443
No 448
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=85.35 E-value=19 Score=32.09 Aligned_cols=155 Identities=9% Similarity=0.088 Sum_probs=87.8
Q ss_pred cccEEEEEECcCCCEEEEEeCCCCEEEEecccCCCCce----eeEEEe--------------cCcCcEEEEEEcC-CCCC
Q 026765 20 KKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKV----KDIELR--------------GHADSVDQLCWDP-KHAD 80 (233)
Q Consensus 20 ~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~~~----~~~~~~--------------~h~~~v~~~~~~~-~~~~ 80 (233)
++..+++. +.++++.|. .+.|.||++..-..... ...... ...-.|+.+...- .+..
T Consensus 40 KNNLtals---q~n~LFiA~-~s~I~Vy~~d~l~~~p~~~p~~~~~t~p~~~~~~D~~~s~~p~PHtIN~i~v~~lg~~E 115 (717)
T PF08728_consen 40 KNNLTALS---QRNLLFIAY-QSEIYVYDPDGLTQLPSRKPCLRFDTKPEFTSTPDRLISTWPFPHTINFIKVGDLGGEE 115 (717)
T ss_pred ccceeEEe---cCCEEEEEE-CCEEEEEecCCcccccccccccccccCccccccccccccCCCCCceeeEEEecccCCee
Confidence 34444444 267777765 79999999753221100 000000 0111233333211 2346
Q ss_pred EEEEEeCCCeEEEEECCC-------C----e---------eeeeeeecCCeeEEEEC--CCCCeEEEEcCCCcEEEEEcC
Q 026765 81 LIATASGDKTVRLWDARS-------G----K---------CSQQAELSGENINITYK--PDGTHIAVGNRDDELTILDVR 138 (233)
Q Consensus 81 ~l~sg~~d~~i~iwd~~~-------~----~---------~~~~~~~~~~~~~~~~~--~~~~~l~~~~~d~~i~i~d~~ 138 (233)
+|+.+..||.|.+|.+.. . . +-..+......+.++++ ...+.||+++....|.+|-..
T Consensus 116 VLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~~rlIAVSsNs~~VTVFaf~ 195 (717)
T PF08728_consen 116 VLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKKSRLIAVSSNSQEVTVFAFA 195 (717)
T ss_pred EEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecCcceEEEEecCCceEEEEEEe
Confidence 788999999999996521 0 0 11122234455678887 778888999888888887543
Q ss_pred C--Ceeee--eeecCceeeEEEECCCC-----C-EEEEEeCCCeEEEEec
Q 026765 139 K--FKPIH--RRKFGYEVNEIAWNMTG-----E-MFFLTTGNGTVEVLTY 178 (233)
Q Consensus 139 ~--~~~~~--~~~~~~~~~~~~~~~~~-----~-~~~~~~~~~~v~~~~~ 178 (233)
. .+... .....+.|.+++|-++. . .+++.+-.|.+.+|++
T Consensus 196 l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 196 LVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred ccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 3 11111 22345567788774432 2 5667778899888876
No 449
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=84.66 E-value=22 Score=29.63 Aligned_cols=190 Identities=15% Similarity=0.133 Sum_probs=85.4
Q ss_pred CCCEEEEEe-CCCCEEEEecccCCCC-ceee-EEE---e---cCcCcEEEEEEcCCCCCEEEEEeC------CCeEEEEE
Q 026765 31 TGTKLASGS-VDQTARVWHIEPHGHG-KVKD-IEL---R---GHADSVDQLCWDPKHADLIATASG------DKTVRLWD 95 (233)
Q Consensus 31 ~~~~l~s~~-~D~~v~vW~~~~~~~~-~~~~-~~~---~---~h~~~v~~~~~~~~~~~~l~sg~~------d~~i~iwd 95 (233)
+.++|+..+ ....|.|.|+.+.... ++.. ++- . +-..+-+.-+ -|+ +.+++|+-. .|-+.+.|
T Consensus 86 ~Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hc-lp~-G~imIS~lGd~~G~g~Ggf~llD 163 (461)
T PF05694_consen 86 ERRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHC-LPD-GRIMISALGDADGNGPGGFVLLD 163 (461)
T ss_dssp -S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE--SS---EEEEEEEETTS-S--EEEEE-
T ss_pred cCCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeee-cCC-ccEEEEeccCCCCCCCCcEEEEc
Confidence 356776666 6788999988643221 2211 110 0 1111212222 233 456666632 25567777
Q ss_pred CCCCeeeeeeeecC----CeeEEEECCCCCeEEEEcC--------------------CCcEEEEEcCCCeeeeeeecC--
Q 026765 96 ARSGKCSQQAELSG----ENINITYKPDGTHIAVGNR--------------------DDELTILDVRKFKPIHRRKFG-- 149 (233)
Q Consensus 96 ~~~~~~~~~~~~~~----~~~~~~~~~~~~~l~~~~~--------------------d~~i~i~d~~~~~~~~~~~~~-- 149 (233)
-++-.....++... ..+.+.+.|..+.+++... ..++.+||+.+.+.++.+..+
T Consensus 164 ~~tf~v~g~We~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg~~ 243 (461)
T PF05694_consen 164 GETFEVKGRWEKDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLGEE 243 (461)
T ss_dssp TTT--EEEE--SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-TT
T ss_pred CccccccceeccCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecCCC
Confidence 76655555444322 2345777887777777654 347999999999988887765
Q ss_pred -ceeeEEEE--CCCCCEEEEEeC-CCeEEEEec-CCce----eeeEEee-----------------ecCceeEEEECCCC
Q 026765 150 -YEVNEIAW--NMTGEMFFLTTG-NGTVEVLTY-PSLR----PLDTVVA-----------------HTAGCYCIAIDPMG 203 (233)
Q Consensus 150 -~~~~~~~~--~~~~~~~~~~~~-~~~v~~~~~-~~~~----~~~~~~~-----------------~~~~v~~i~~~p~~ 203 (233)
.-...+.| .|+..+=.+++. ..+|..|-- +.++ .+..+.. -..-|+.|.+|.|+
T Consensus 244 g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDD 323 (461)
T PF05694_consen 244 GQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDD 323 (461)
T ss_dssp EEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--SS---GGGGGG-EE------EEE-TTS
T ss_pred CCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccCcccccccccccccCCCceEeEEEccCC
Confidence 23445555 444444333332 333433322 2221 1111111 12346889999999
Q ss_pred CEEEEee-CCCcEEEEecCC
Q 026765 204 RYFAVGS-ADSLVSLWDISE 222 (233)
Q Consensus 204 ~~las~s-~dg~v~iwd~~~ 222 (233)
++|.... -+|.|+-||+.+
T Consensus 324 rfLYvs~W~~GdvrqYDISD 343 (461)
T PF05694_consen 324 RFLYVSNWLHGDVRQYDISD 343 (461)
T ss_dssp -EEEEEETTTTEEEEEE-SS
T ss_pred CEEEEEcccCCcEEEEecCC
Confidence 9987655 689999999975
No 450
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=84.58 E-value=33 Score=31.60 Aligned_cols=155 Identities=13% Similarity=0.118 Sum_probs=82.3
Q ss_pred ccEEEEEECcCCCEEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCC--CCC---EEEEEeCCCeEEEEE
Q 026765 21 KKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPK--HAD---LIATASGDKTVRLWD 95 (233)
Q Consensus 21 ~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~--~~~---~l~sg~~d~~i~iwd 95 (233)
+.++..+-+.+..+++.++.++.+..-++.... +....-......|.|+.++|. +++ +++.|.++..+.+--
T Consensus 488 ~~~ti~~~~~n~sqVvvA~~~~~l~y~~i~~~~---l~e~~~~~~e~evaCLDisp~~d~~~~s~~~aVG~Ws~~~~~l~ 564 (1096)
T KOG1897|consen 488 GKITIGVVSANASQVVVAGGGLALFYLEIEDGG---LREVSHKEFEYEVACLDISPLGDAPNKSRLLAVGLWSDISMILT 564 (1096)
T ss_pred CceEEEEEeecceEEEEecCccEEEEEEeeccc---eeeeeeheecceeEEEecccCCCCCCcceEEEEEeecceEEEEE
Confidence 334444444445566666666655555554322 111111123457889999875 445 889999988776543
Q ss_pred C-CCCeeeeeeeecCC-----eeEEEECCCCCeEEEEcCCCcEEEEEc--CCCeeeeee--ecC-ceeeEEEECCCCCEE
Q 026765 96 A-RSGKCSQQAELSGE-----NINITYKPDGTHIAVGNRDDELTILDV--RKFKPIHRR--KFG-YEVNEIAWNMTGEMF 164 (233)
Q Consensus 96 ~-~~~~~~~~~~~~~~-----~~~~~~~~~~~~l~~~~~d~~i~i~d~--~~~~~~~~~--~~~-~~~~~~~~~~~~~~~ 164 (233)
. .............+ +.-..+-.|..+|.++..||.+..|.+ .++...... ..+ .++.--.|+..++..
T Consensus 565 ~~pd~~~~~~~~l~~~~iPRSIl~~~~e~d~~yLlvalgdG~l~~fv~d~~tg~lsd~Kk~~lGt~P~~Lr~f~sk~~t~ 644 (1096)
T KOG1897|consen 565 FLPDLILITHEQLSGEIIPRSILLTTFEGDIHYLLVALGDGALLYFVLDINTGQLSDRKKVTLGTQPISLRTFSSKSRTA 644 (1096)
T ss_pred ECCCcceeeeeccCCCccchheeeEEeeccceEEEEEcCCceEEEEEEEcccceEccccccccCCCCcEEEEEeeCCceE
Confidence 3 23222222222222 222445556889999999999876654 333322222 122 233333455555555
Q ss_pred EEEeCCCeEEEEec
Q 026765 165 FLTTGNGTVEVLTY 178 (233)
Q Consensus 165 ~~~~~~~~v~~~~~ 178 (233)
+.+..|.-..+|..
T Consensus 645 vfa~sdrP~viY~~ 658 (1096)
T KOG1897|consen 645 VFALSDRPTVIYSS 658 (1096)
T ss_pred EEEeCCCCEEEEec
Confidence 66666655555554
No 451
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=84.46 E-value=3.1 Score=36.78 Aligned_cols=69 Identities=13% Similarity=0.252 Sum_probs=46.0
Q ss_pred ccccEEEEEECcCCCEEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCCeEEEEE
Q 026765 19 HKKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWD 95 (233)
Q Consensus 19 H~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~iwd 95 (233)
....++++.-+|.+.-++++..||++++++..+..+++++.... +-..+.|.. +-|+++..|..+.-|.
T Consensus 13 ~~e~~~aiqshp~~~s~v~~~~d~si~lfn~~~r~qski~~~~~-----p~~nlv~tn---hgl~~~tsdrr~la~~ 81 (1636)
T KOG3616|consen 13 EDEFTTAIQSHPGGQSFVLAHQDGSIILFNFIPRRQSKICEEAK-----PKENLVFTN---HGLVTATSDRRALAWK 81 (1636)
T ss_pred ccceeeeeeecCCCceEEEEecCCcEEEEeecccchhhhhhhcC-----Cccceeeec---cceEEEeccchhheee
Confidence 45668889989999999999999999999988766655543221 122233321 1245666666666664
No 452
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=84.31 E-value=13 Score=26.61 Aligned_cols=31 Identities=19% Similarity=0.408 Sum_probs=22.9
Q ss_pred cEEEEEEcCCC-----CCEEEEEeCCCeEEEEECCC
Q 026765 68 SVDQLCWDPKH-----ADLIATASGDKTVRLWDARS 98 (233)
Q Consensus 68 ~v~~~~~~~~~-----~~~l~sg~~d~~i~iwd~~~ 98 (233)
.+..++|+|.| +=+|+.-..++.|.||.-..
T Consensus 87 ~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~ 122 (173)
T PF12657_consen 87 QVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG 122 (173)
T ss_pred cEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence 68889999854 22567778888999987653
No 453
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=83.66 E-value=20 Score=28.36 Aligned_cols=152 Identities=15% Similarity=0.232 Sum_probs=69.7
Q ss_pred EecCcCcEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeee-eeecCCeeEEEECCCCCeEEEEcCCCcEEEEEc-CC
Q 026765 62 LRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQ-AELSGENINITYKPDGTHIAVGNRDDELTILDV-RK 139 (233)
Q Consensus 62 ~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~-~~ 139 (233)
...-...+..+.-.+++ .+++.++.-..+.-||-........ ......+.++.|.|++...+++ ..+.+..=+. ..
T Consensus 140 ~~~~~gs~~~~~r~~dG-~~vavs~~G~~~~s~~~G~~~w~~~~r~~~~riq~~gf~~~~~lw~~~-~Gg~~~~s~~~~~ 217 (302)
T PF14870_consen 140 VSETSGSINDITRSSDG-RYVAVSSRGNFYSSWDPGQTTWQPHNRNSSRRIQSMGFSPDGNLWMLA-RGGQIQFSDDPDD 217 (302)
T ss_dssp E-S----EEEEEE-TTS--EEEEETTSSEEEEE-TT-SS-EEEE--SSS-EEEEEE-TTS-EEEEE-TTTEEEEEE-TTE
T ss_pred ccCCcceeEeEEECCCC-cEEEEECcccEEEEecCCCccceEEccCccceehhceecCCCCEEEEe-CCcEEEEccCCCC
Confidence 34445677888877765 5665555444556787544322222 2234456679999998766644 7788887762 11
Q ss_pred Ceeeee----e-ecCceeeEEEECCCCCEEEEEeCCCeEEEEecCCc---eeeeEEeeecCceeEEEECCCCCEEEEeeC
Q 026765 140 FKPIHR----R-KFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSL---RPLDTVVAHTAGCYCIAIDPMGRYFAVGSA 211 (233)
Q Consensus 140 ~~~~~~----~-~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~~~~~~~~~~~~v~~i~~~p~~~~las~s~ 211 (233)
.+.-.. . .....+..++|.++++.+++++ +|.+.. ..+.+ +.......-....+.|.|.+..+-++.| .
T Consensus 218 ~~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg-~G~l~~-S~DgGktW~~~~~~~~~~~n~~~i~f~~~~~gf~lG-~ 294 (302)
T PF14870_consen 218 GETWSEPIIPIKTNGYGILDLAYRPPNEIWAVGG-SGTLLV-STDGGKTWQKDRVGENVPSNLYRIVFVNPDKGFVLG-Q 294 (302)
T ss_dssp EEEE---B-TTSS--S-EEEEEESSSS-EEEEES-TT-EEE-ESSTTSS-EE-GGGTTSSS---EEEEEETTEEEEE--S
T ss_pred ccccccccCCcccCceeeEEEEecCCCCEEEEeC-CccEEE-eCCCCccceECccccCCCCceEEEEEcCCCceEEEC-C
Confidence 111111 1 1234578889998876666554 443322 22222 2222111123345678887655556555 6
Q ss_pred CCcEEEE
Q 026765 212 DSLVSLW 218 (233)
Q Consensus 212 dg~v~iw 218 (233)
+|.+--|
T Consensus 295 ~G~ll~~ 301 (302)
T PF14870_consen 295 DGVLLRY 301 (302)
T ss_dssp TTEEEEE
T ss_pred CcEEEEe
Confidence 7766544
No 454
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=83.16 E-value=18 Score=27.55 Aligned_cols=139 Identities=15% Similarity=0.203 Sum_probs=75.1
Q ss_pred EEEEECCCCeeeeeeeecCCeeE--EEECCCCCeEEEEcCC---CcEEEEEcCC----Ceeeee---eecCceeeEEEEC
Q 026765 91 VRLWDARSGKCSQQAELSGENIN--ITYKPDGTHIAVGNRD---DELTILDVRK----FKPIHR---RKFGYEVNEIAWN 158 (233)
Q Consensus 91 i~iwd~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~d---~~i~i~d~~~----~~~~~~---~~~~~~~~~~~~~ 158 (233)
-.+||+.+++.. .+.......| -.+.+||+.+.+|+.. ..+++++... ...... ...+.=-....-=
T Consensus 48 s~~yD~~tn~~r-pl~v~td~FCSgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~~~L 126 (243)
T PF07250_consen 48 SVEYDPNTNTFR-PLTVQTDTFCSGGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTATTL 126 (243)
T ss_pred EEEEecCCCcEE-eccCCCCCcccCcCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECcccccCCCccccceEC
Confidence 357998887542 2333333343 3577999999988753 3477777543 111110 0000000112223
Q ss_pred CCCCEEEEEeCCC-eEEEEecCC--ceeee-EEeeec---Cc---eeEEEECCCCCEEEEeeCCCcEEEEecCCcEEEEe
Q 026765 159 MTGEMFFLTTGNG-TVEVLTYPS--LRPLD-TVVAHT---AG---CYCIAIDPMGRYFAVGSADSLVSLWDISEMLCVRT 228 (233)
Q Consensus 159 ~~~~~~~~~~~~~-~v~~~~~~~--~~~~~-~~~~~~---~~---v~~i~~~p~~~~las~s~dg~v~iwd~~~~~~i~~ 228 (233)
+||+.+++|+... +..+|.... ..... .+.... .. =.-+-..|+|+.++.+..+ -.|||....+.+++
T Consensus 127 ~DG~vlIvGG~~~~t~E~~P~~~~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~~--s~i~d~~~n~v~~~ 204 (243)
T PF07250_consen 127 PDGRVLIVGGSNNPTYEFWPPKGPGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANRG--SIIYDYKTNTVVRT 204 (243)
T ss_pred CCCCEEEEeCcCCCcccccCCccCCCCceeeecchhhhccCccccCceEEEcCCCCEEEEEcCC--cEEEeCCCCeEEee
Confidence 6899888887764 344444311 11111 111110 11 1145678999999888765 56679888888888
Q ss_pred eecC
Q 026765 229 FTKL 232 (233)
Q Consensus 229 ~~~~ 232 (233)
|+.+
T Consensus 205 lP~l 208 (243)
T PF07250_consen 205 LPDL 208 (243)
T ss_pred CCCC
Confidence 7754
No 455
>smart00564 PQQ beta-propeller repeat. Beta-propeller repeat occurring in enzymes with pyrrolo-quinoline quinone (PQQ) as cofactor, in Ire1p-like Ser/Thr kinases, and in prokaryotic dehydrogenases.
Probab=83.08 E-value=3.6 Score=19.88 Aligned_cols=25 Identities=24% Similarity=0.201 Sum_probs=20.6
Q ss_pred EEEEeeCCCcEEEEecCCcEEEEee
Q 026765 205 YFAVGSADSLVSLWDISEMLCVRTF 229 (233)
Q Consensus 205 ~las~s~dg~v~iwd~~~~~~i~~~ 229 (233)
.+..++.+|.+..+|.++|+.+-++
T Consensus 8 ~v~~~~~~g~l~a~d~~~G~~~W~~ 32 (33)
T smart00564 8 TVYVGSTDGTLYALDAKTGEILWTY 32 (33)
T ss_pred EEEEEcCCCEEEEEEcccCcEEEEc
Confidence 5777888999999999999876554
No 456
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=83.03 E-value=41 Score=31.53 Aligned_cols=30 Identities=17% Similarity=0.224 Sum_probs=25.7
Q ss_pred cccEEEEEECcCCCEEEEEeCCCCEEEEec
Q 026765 20 KKKVHSVAWNCTGTKLASGSVDQTARVWHI 49 (233)
Q Consensus 20 ~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~ 49 (233)
...-..++|+|....+|-|..+|.|+++-.
T Consensus 35 ~~~~~~~afD~~q~llai~t~tg~i~~yg~ 64 (993)
T KOG1983|consen 35 PSTPSALAFDPTQGLLAIGTRTGAIKIYGQ 64 (993)
T ss_pred CCCCcceeeccccceEEEEEecccEEEecc
Confidence 345668899999999999999999999864
No 457
>PRK14131 N-acetylneuraminic acid mutarotase; Provisional
Probab=82.92 E-value=24 Score=28.76 Aligned_cols=51 Identities=12% Similarity=0.138 Sum_probs=25.4
Q ss_pred CCEEEEEeCCC-----------eEEEEECCCCeeeeeeee-cCCee-EEEEC-CCCCeEEEEcCC
Q 026765 79 ADLIATASGDK-----------TVRLWDARSGKCSQQAEL-SGENI-NITYK-PDGTHIAVGNRD 129 (233)
Q Consensus 79 ~~~l~sg~~d~-----------~i~iwd~~~~~~~~~~~~-~~~~~-~~~~~-~~~~~l~~~~~d 129 (233)
..+.+.|+.+. .+..||..+.+....... ..... ..+.. .+++..+.|+.+
T Consensus 85 ~~IYV~GG~~~~~~~~~~~~~~~v~~YD~~~n~W~~~~~~~p~~~~~~~~~~~~~~~IYv~GG~~ 149 (376)
T PRK14131 85 GKLYVFGGIGKTNSEGSPQVFDDVYKYDPKTNSWQKLDTRSPVGLAGHVAVSLHNGKAYITGGVN 149 (376)
T ss_pred CEEEEEcCCCCCCCCCceeEcccEEEEeCCCCEEEeCCCCCCCcccceEEEEeeCCEEEEECCCC
Confidence 45666776542 466788877655442211 11111 11122 456666777753
No 458
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=82.68 E-value=18 Score=27.00 Aligned_cols=102 Identities=16% Similarity=0.184 Sum_probs=55.0
Q ss_pred CCCEEEEEeC--CCCEEEEecccCCCCceeeEEEec---CcCcEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeee
Q 026765 31 TGTKLASGSV--DQTARVWHIEPHGHGKVKDIELRG---HADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQA 105 (233)
Q Consensus 31 ~~~~l~s~~~--D~~v~vW~~~~~~~~~~~~~~~~~---h~~~v~~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~ 105 (233)
+|.++.|.+. ...|++||+.... .+....+.. ....++.+ +..+..-.-.+|...++|.++-++...+
T Consensus 55 ~g~i~esTG~yg~S~ir~~~L~~gq--~~~s~~l~~~~~FgEGit~~-----gd~~y~LTw~egvaf~~d~~t~~~lg~~ 127 (262)
T COG3823 55 DGHILESTGLYGFSKIRVSDLTTGQ--EIFSEKLAPDTVFGEGITKL-----GDYFYQLTWKEGVAFKYDADTLEELGRF 127 (262)
T ss_pred CCEEEEeccccccceeEEEeccCce--EEEEeecCCccccccceeec-----cceEEEEEeccceeEEEChHHhhhhccc
Confidence 4567777764 4568899986421 111111210 00112111 1222233345677778888877777777
Q ss_pred eecCCeeEEEECCCCCeEEEEcCCCcEEEEEcCCCe
Q 026765 106 ELSGENINITYKPDGTHIAVGNRDDELTILDVRKFK 141 (233)
Q Consensus 106 ~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~ 141 (233)
...++.+.++. |+..++.+.....+..-|.++..
T Consensus 128 ~y~GeGWgLt~--d~~~LimsdGsatL~frdP~tfa 161 (262)
T COG3823 128 SYEGEGWGLTS--DDKNLIMSDGSATLQFRDPKTFA 161 (262)
T ss_pred ccCCcceeeec--CCcceEeeCCceEEEecCHHHhh
Confidence 77777766653 45556655555566666665543
No 459
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=82.49 E-value=23 Score=28.32 Aligned_cols=51 Identities=10% Similarity=0.102 Sum_probs=25.8
Q ss_pred CCEEEEEeCC-----------CeEEEEECCCCeeeeeee-ecCCeeE-EEE-CCCCCeEEEEcCC
Q 026765 79 ADLIATASGD-----------KTVRLWDARSGKCSQQAE-LSGENIN-ITY-KPDGTHIAVGNRD 129 (233)
Q Consensus 79 ~~~l~sg~~d-----------~~i~iwd~~~~~~~~~~~-~~~~~~~-~~~-~~~~~~l~~~~~d 129 (233)
.++.+.|+.+ ..+..||..+.+...... ....... .+. .-+++..+.|+.+
T Consensus 64 ~~iYv~GG~~~~~~~~~~~~~~~v~~Yd~~~~~W~~~~~~~p~~~~~~~~~~~~~g~IYviGG~~ 128 (346)
T TIGR03547 64 GKLYVFGGIGKANSEGSPQVFDDVYRYDPKKNSWQKLDTRSPVGLLGASGFSLHNGQAYFTGGVN 128 (346)
T ss_pred CEEEEEeCCCCCCCCCcceecccEEEEECCCCEEecCCCCCCCcccceeEEEEeCCEEEEEcCcC
Confidence 4566777653 246678887766543221 1111111 111 2466677777754
No 460
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=82.34 E-value=4.9 Score=20.38 Aligned_cols=29 Identities=10% Similarity=0.315 Sum_probs=20.7
Q ss_pred cCcEEEEEEcCCCCCEEEEEeCC--CeEEEE
Q 026765 66 ADSVDQLCWDPKHADLIATASGD--KTVRLW 94 (233)
Q Consensus 66 ~~~v~~~~~~~~~~~~l~sg~~d--~~i~iw 94 (233)
...-....|+|++..+++++..+ |...||
T Consensus 8 ~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 8 PGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp SSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred CccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 34566778999988888888777 666665
No 461
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=81.51 E-value=1.4 Score=39.52 Aligned_cols=41 Identities=15% Similarity=0.192 Sum_probs=22.0
Q ss_pred CCCEEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEEEEEEcC
Q 026765 31 TGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVDQLCWDP 76 (233)
Q Consensus 31 ~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~ 76 (233)
..-++.-+-.+++|++-..++... ..+.+|...+..++|..
T Consensus 194 ~~~~ic~~~~~~~i~lL~~~ra~~-----~l~rsHs~~~~d~a~~~ 234 (1283)
T KOG1916|consen 194 NKVYICYGLKGGEIRLLNINRALR-----SLFRSHSQRVTDMAFFA 234 (1283)
T ss_pred ccceeeeccCCCceeEeeechHHH-----HHHHhcCCCcccHHHHh
Confidence 345556666677777755443211 12345766666665543
No 462
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=81.04 E-value=52 Score=31.37 Aligned_cols=155 Identities=22% Similarity=0.234 Sum_probs=83.2
Q ss_pred CcCcEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeee-eecCCeeEEE--------ECCCCCeEEEEcCCCcEEEE
Q 026765 65 HADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQA-ELSGENINIT--------YKPDGTHIAVGNRDDELTIL 135 (233)
Q Consensus 65 h~~~v~~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~-~~~~~~~~~~--------~~~~~~~l~~~~~d~~i~i~ 135 (233)
|...-..+-+.|.=++.. .+-|+.+.+|+..++...... ..+..+..|. |-|.=+++++-+---.+.++
T Consensus 77 ~~~~~~~mGiFpeI~RaW--iTiDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~il 154 (1311)
T KOG1900|consen 77 NIECKTDMGIFPEIGRAW--ITIDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVIL 154 (1311)
T ss_pred CcceeeeeccchhhcceE--EEeCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEE
Confidence 444444555555434433 457889999999885432222 2222233322 22332333333222233333
Q ss_pred Ec----CCCeee-----eeee-cCceeeEEEECCCCCEEEEEeCCCeEEEEecC--Cc---e-----------------e
Q 026765 136 DV----RKFKPI-----HRRK-FGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYP--SL---R-----------------P 183 (233)
Q Consensus 136 d~----~~~~~~-----~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~---~-----------------~ 183 (233)
-+ .+.... .... .+..++++....+|+.+++|-.+ .+.-.-+. ++ + .
T Consensus 155 gV~~~~~~~~~~~f~~~~~i~~dg~~V~~I~~t~nGRIF~~G~dg-~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs 233 (1311)
T KOG1900|consen 155 GVSFDEFTGELSIFNTSFKISVDGVSVNCITYTENGRIFFAGRDG-NLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPS 233 (1311)
T ss_pred EEEeccccCcccccccceeeecCCceEEEEEeccCCcEEEeecCC-CEEEEEEeccCchhhcccccccCchhHHHHhhhh
Confidence 22 111110 1111 25568888877777766665444 44322221 10 0 0
Q ss_pred eeEEe-eecCceeEEEECCCCCEEEEeeCCCcEEEEecCC
Q 026765 184 LDTVV-AHTAGCYCIAIDPMGRYFAVGSADSLVSLWDISE 222 (233)
Q Consensus 184 ~~~~~-~~~~~v~~i~~~p~~~~las~s~dg~v~iwd~~~ 222 (233)
+..+. .+.++|..++.+.....|.+=++.|+|.+||+..
T Consensus 234 ~~~~~~~~~dpI~qi~ID~SR~IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 234 LLSVPGSSKDPIRQITIDNSRNILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred hhcCCCCCCCcceeeEeccccceeeeeccCceEEEEEccC
Confidence 12222 4567899999998888999999999999999976
No 463
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=80.91 E-value=24 Score=31.66 Aligned_cols=68 Identities=13% Similarity=0.173 Sum_probs=43.8
Q ss_pred cCcEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeeeeecCCeeEEEECCCCCeEEEEcCCCcEEEEE
Q 026765 66 ADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNRDDELTILD 136 (233)
Q Consensus 66 ~~~v~~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d 136 (233)
...++++.-+|.++ -+++|..||.|++|+....+.........+..++.|...| +++...|....-|.
T Consensus 14 ~e~~~aiqshp~~~-s~v~~~~d~si~lfn~~~r~qski~~~~~p~~nlv~tnhg--l~~~tsdrr~la~~ 81 (1636)
T KOG3616|consen 14 DEFTTAIQSHPGGQ-SFVLAHQDGSIILFNFIPRRQSKICEEAKPKENLVFTNHG--LVTATSDRRALAWK 81 (1636)
T ss_pred cceeeeeeecCCCc-eEEEEecCCcEEEEeecccchhhhhhhcCCccceeeeccc--eEEEeccchhheee
Confidence 34567778788654 5679999999999998766554444444555566665443 44455555555554
No 464
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=80.90 E-value=22 Score=27.00 Aligned_cols=79 Identities=16% Similarity=0.228 Sum_probs=52.0
Q ss_pred eeEEEECCCCCEEEEE-eCCCeEEEEec--CCc-----eeeeEEee---ecC-ceeEEEECCCCCEEEEeeCCCcEEEEe
Q 026765 152 VNEIAWNMTGEMFFLT-TGNGTVEVLTY--PSL-----RPLDTVVA---HTA-GCYCIAIDPMGRYFAVGSADSLVSLWD 219 (233)
Q Consensus 152 ~~~~~~~~~~~~~~~~-~~~~~v~~~~~--~~~-----~~~~~~~~---~~~-~v~~i~~~p~~~~las~s~dg~v~iwd 219 (233)
.+.++|+.+.+.+... +-+-.+.-||+ +++ +.+..+.. ... ..-.++++..|.+.++.-+.++|...|
T Consensus 160 sNgl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~d 239 (310)
T KOG4499|consen 160 SNGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRKSQPFESLEPDGMTIDTEGNLYVATFNGGTVQKVD 239 (310)
T ss_pred CccccccccCcEEEEEccCceEEeeeecCCCcccccCcceeEEeccCCCcCCCCCCcceEccCCcEEEEEecCcEEEEEC
Confidence 3678898887776655 45667777774 332 22322222 111 112345566888888888899999999
Q ss_pred cCCcEEEEeee
Q 026765 220 ISEMLCVRTFT 230 (233)
Q Consensus 220 ~~~~~~i~~~~ 230 (233)
..+|+.+++|.
T Consensus 240 p~tGK~L~eik 250 (310)
T KOG4499|consen 240 PTTGKILLEIK 250 (310)
T ss_pred CCCCcEEEEEE
Confidence 99999998874
No 465
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=80.54 E-value=27 Score=27.71 Aligned_cols=101 Identities=13% Similarity=0.146 Sum_probs=47.6
Q ss_pred CCEEEEEeCC-----CeEEEEECCCCeee----eeeeecCC--eeEEEECCCCCeEEEEcC-----CCcEEEEEcCCCee
Q 026765 79 ADLIATASGD-----KTVRLWDARSGKCS----QQAELSGE--NINITYKPDGTHIAVGNR-----DDELTILDVRKFKP 142 (233)
Q Consensus 79 ~~~l~sg~~d-----~~i~iwd~~~~~~~----~~~~~~~~--~~~~~~~~~~~~l~~~~~-----d~~i~i~d~~~~~~ 142 (233)
..+++.|+.+ ..+..+|+.+.+.. ..-..... ...++. -+++..+.|+. ...+..||+.+.+.
T Consensus 73 ~~lyviGG~~~~~~~~~v~~~d~~~~~w~~~~~~~~~lp~~~~~~~~~~-~~~~iYv~GG~~~~~~~~~v~~yd~~~~~W 151 (323)
T TIGR03548 73 NGIYYIGGSNSSERFSSVYRITLDESKEELICETIGNLPFTFENGSACY-KDGTLYVGGGNRNGKPSNKSYLFNLETQEW 151 (323)
T ss_pred CEEEEEcCCCCCCCceeEEEEEEcCCceeeeeeEcCCCCcCccCceEEE-ECCEEEEEeCcCCCccCceEEEEcCCCCCe
Confidence 3566677754 34666777665531 11111111 112222 24555566664 23577888876543
Q ss_pred eeeeecC--ceeeEEEECCCCCEEEEEeCCC----eEEEEecCC
Q 026765 143 IHRRKFG--YEVNEIAWNMTGEMFFLTTGNG----TVEVLTYPS 180 (233)
Q Consensus 143 ~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~----~v~~~~~~~ 180 (233)
....... ..........+++.++.|+.++ .+..||..+
T Consensus 152 ~~~~~~p~~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~ 195 (323)
T TIGR03548 152 FELPDFPGEPRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKK 195 (323)
T ss_pred eECCCCCCCCCCcceEEEECCEEEEEcCCCCccccceEEEecCC
Confidence 3221111 1111222234567777776543 245677654
No 466
>PF01731 Arylesterase: Arylesterase; InterPro: IPR002640 The serum paraoxonases/arylesterases are enzymes that catalyse the hydrolysis of the toxic metabolites of a variety of organophosphorus insecticides. The enzymes hydrolyse a broad spectrum of organophosphate substrates, including paraoxon and a number of aromatic carboxylic acid esters (e.g., phenyl acetate), and hence confer resistance to organophosphate toxicity []. Mammals have 3 distinct paraoxonase types, termed PON1-3 [, ]. In mice and humans, the PON genes are found on the same chromosome in close proximity. PON activity has been found in variety of tissues, with highest levels in liver and serum - the source of serum PON is thought to be the liver. Unlike mammals, fish and avian species lack paraoxonase activity. Human and rabbit PONs appear to have two distinct Ca2+ binding sites, one required for stability and one required for catalytic activity. The Ca2+ dependency of PONs suggests a mechanism of hydrolysis where Ca2+ acts as the electrophillic catalyst, like that proposed for phospholipase A2. The paraoxonase enzymes, PON1 and PON3, are high density lipoprotein (HDL)- associated proteins capable of preventing oxidative modification of low density lipoproteins (LPL) []. Although PON2 has oxidative properties, the enzyme does not associate with HDL. Within a given species, PON1, PON2 and PON3 share ~60% amino acid sequence identity, whereas between mammalian species particular PONs (1,2 or 3) share 79-90% identity at the amino acid level. Human PON1 and PON3 share numerous conserved phosphorylation and N-glycosylation sites; however, it is not known whether the PON proteins are modified at these sites, or whether modification at these sites is required for activity in vivo []. This family consists of arylesterases (Also known as serum paraoxonase) 3.1.1.2 from EC. These enzymes hydrolyse organophosphorus esters such as paraoxon and are found in the liver and blood. They confer resistance to organophosphate toxicity []. Human arylesterase (PON1) P27169 from SWISSPROT is associated with HDL and may protect against LDL oxidation [].; GO: 0004064 arylesterase activity
Probab=80.18 E-value=12 Score=23.40 Aligned_cols=31 Identities=23% Similarity=0.301 Sum_probs=24.2
Q ss_pred CceeEEEECCCCCEEEEee-CCCcEEEEecCC
Q 026765 192 AGCYCIAIDPMGRYFAVGS-ADSLVSLWDISE 222 (233)
Q Consensus 192 ~~v~~i~~~p~~~~las~s-~dg~v~iwd~~~ 222 (233)
...+.|.++|++++|..++ ..+.|.+|...+
T Consensus 54 ~~aNGI~~s~~~k~lyVa~~~~~~I~vy~~~~ 85 (86)
T PF01731_consen 54 SFANGIAISPDKKYLYVASSLAHSIHVYKRHK 85 (86)
T ss_pred CCCceEEEcCCCCEEEEEeccCCeEEEEEecC
Confidence 4457899999999876555 578899998764
No 467
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=79.76 E-value=5 Score=18.86 Aligned_cols=25 Identities=20% Similarity=0.355 Sum_probs=16.2
Q ss_pred eeEEEECCCCCEEEEeeCCCcEEEE
Q 026765 194 CYCIAIDPMGRYFAVGSADSLVSLW 218 (233)
Q Consensus 194 v~~i~~~p~~~~las~s~dg~v~iw 218 (233)
...++++++|+.+++=+....|++|
T Consensus 4 P~gvav~~~g~i~VaD~~n~rV~vf 28 (28)
T PF01436_consen 4 PHGVAVDSDGNIYVADSGNHRVQVF 28 (28)
T ss_dssp EEEEEEETTSEEEEEECCCTEEEEE
T ss_pred CcEEEEeCCCCEEEEECCCCEEEEC
Confidence 3466777777777766666666654
No 468
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=79.40 E-value=29 Score=27.38 Aligned_cols=147 Identities=16% Similarity=0.230 Sum_probs=84.2
Q ss_pred cEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeeee-ecCCeeEEEECCCCCeEEEEcCCCcEEEEEcCCCee---e
Q 026765 68 SVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAE-LSGENINITYKPDGTHIAVGNRDDELTILDVRKFKP---I 143 (233)
Q Consensus 68 ~v~~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~---~ 143 (233)
-+..+.++. ++...+.++.-++|.|+.+........ .....+.-.+.-.|++..++..|..+.+.|+...+. .
T Consensus 88 l~~Dv~vse---~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~gyaygv~vsGn~aYVadlddgfLivdvsdpssP~la 164 (370)
T COG5276 88 LFADVRVSE---EYVYVADWSSGLRIVDISTPDSPTLIGFLNTDGYAYGVYVSGNYAYVADLDDGFLIVDVSDPSSPQLA 164 (370)
T ss_pred hhheeEecc---cEEEEEcCCCceEEEeccCCCCcceeccccCCceEEEEEecCCEEEEeeccCcEEEEECCCCCCceee
Confidence 445566653 356667788889999998765433222 111133334455688888888787888899865332 1
Q ss_pred eeeecC-ceeeEEEECCCCCEEEEEeCCCeEEEEecCCc-eeeeEEeeec-CceeEEEECCCCCEEEEeeCCCcEEEEec
Q 026765 144 HRRKFG-YEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSL-RPLDTVVAHT-AGCYCIAIDPMGRYFAVGSADSLVSLWDI 220 (233)
Q Consensus 144 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~~~~~~~~-~~v~~i~~~p~~~~las~s~dg~v~iwd~ 220 (233)
-+.... .....++ -.|++-..+..++-+.+.|.... ++...-.-.. ..+.++..+++..+++... .-+-+-|.
T Consensus 165 grya~~~~d~~~v~--ISGn~AYvA~~d~GL~ivDVSnp~sPvli~~~n~g~g~~sv~vsdnr~y~vvy~--egvlivd~ 240 (370)
T COG5276 165 GRYALPGGDTHDVA--ISGNYAYVAWRDGGLTIVDVSNPHSPVLIGSYNTGPGTYSVSVSDNRAYLVVYD--EGVLIVDV 240 (370)
T ss_pred eeeccCCCCceeEE--EecCeEEEEEeCCCeEEEEccCCCCCeEEEEEecCCceEEEEecCCeeEEEEcc--cceEEEec
Confidence 111111 1112222 35778888888888999987543 2221111122 3678888888766655443 22444444
Q ss_pred C
Q 026765 221 S 221 (233)
Q Consensus 221 ~ 221 (233)
.
T Consensus 241 s 241 (370)
T COG5276 241 S 241 (370)
T ss_pred C
Confidence 4
No 469
>PRK10115 protease 2; Provisional
Probab=77.23 E-value=54 Score=29.37 Aligned_cols=191 Identities=9% Similarity=0.012 Sum_probs=91.3
Q ss_pred ccEEEEEECcCCCEEEEEe-CCC----CEEEEecccCCCCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCC-----Ce
Q 026765 21 KKVHSVAWNCTGTKLASGS-VDQ----TARVWHIEPHGHGKVKDIELRGHADSVDQLCWDPKHADLIATASGD-----KT 90 (233)
Q Consensus 21 ~~V~~~~~~~~~~~l~s~~-~D~----~v~vW~~~~~~~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d-----~~ 90 (233)
-.+..+.|+|+|++|+-+- .+| .+++-|+... ......+.+ .-..++|.+++..++++...+ ..
T Consensus 127 ~~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg---~~l~~~i~~---~~~~~~w~~D~~~~~y~~~~~~~~~~~~ 200 (686)
T PRK10115 127 YTLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETG---NWYPELLDN---VEPSFVWANDSWTFYYVRKHPVTLLPYQ 200 (686)
T ss_pred EEEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCC---CCCCccccC---cceEEEEeeCCCEEEEEEecCCCCCCCE
Confidence 3466788999999876553 233 3556666432 111111211 125689998877777765533 35
Q ss_pred EEEEECCCCe--eeeeeeec-CCee-EEEECCCCCeEEEEcC---CCcEEEEEcC--CCeeeeeee--cCceeeEEEECC
Q 026765 91 VRLWDARSGK--CSQQAELS-GENI-NITYKPDGTHIAVGNR---DDELTILDVR--KFKPIHRRK--FGYEVNEIAWNM 159 (233)
Q Consensus 91 i~iwd~~~~~--~~~~~~~~-~~~~-~~~~~~~~~~l~~~~~---d~~i~i~d~~--~~~~~~~~~--~~~~~~~~~~~~ 159 (233)
|..+++.++. -...+... .... ....+.++++++.... ++.+.+++.. ......... .+...... +.
T Consensus 201 v~~h~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~~~l~i~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~ 278 (686)
T PRK10115 201 VWRHTIGTPASQDELVYEEKDDTFYVSLHKTTSKHYVVIHLASATTSEVLLLDAELADAEPFVFLPRRKDHEYSLD--HY 278 (686)
T ss_pred EEEEECCCChhHCeEEEeeCCCCEEEEEEEcCCCCEEEEEEECCccccEEEEECcCCCCCceEEEECCCCCEEEEE--eC
Confidence 7778887773 22222211 1122 2334557777665443 3467888842 222111111 12222222 22
Q ss_pred CCCEEEEEeC-CCeEEEE--ecCCceeeeEEeeec--CceeEEEECCCCCEEEEeeCCCcEEEEec
Q 026765 160 TGEMFFLTTG-NGTVEVL--TYPSLRPLDTVVAHT--AGCYCIAIDPMGRYFAVGSADSLVSLWDI 220 (233)
Q Consensus 160 ~~~~~~~~~~-~~~v~~~--~~~~~~~~~~~~~~~--~~v~~i~~~p~~~~las~s~dg~v~iwd~ 220 (233)
.+.+++.... ....++. ++........+..+. ..+..+.++ .+..+++...+|.-+++-+
T Consensus 279 ~~~ly~~tn~~~~~~~l~~~~~~~~~~~~~l~~~~~~~~i~~~~~~-~~~l~~~~~~~g~~~l~~~ 343 (686)
T PRK10115 279 QHRFYLRSNRHGKNFGLYRTRVRDEQQWEELIPPRENIMLEGFTLF-TDWLVVEERQRGLTSLRQI 343 (686)
T ss_pred CCEEEEEEcCCCCCceEEEecCCCcccCeEEECCCCCCEEEEEEEE-CCEEEEEEEeCCEEEEEEE
Confidence 3333333332 2233333 333112223344442 256667776 3345556666776555444
No 470
>PLN02193 nitrile-specifier protein
Probab=75.96 E-value=48 Score=28.08 Aligned_cols=145 Identities=10% Similarity=0.025 Sum_probs=68.2
Q ss_pred CCEEEEEeCC-----CeEEEEECCCCeeeeeeeec---CCe--eEEEECCCCCeEEEEcCCC-----cEEEEEcCCCeee
Q 026765 79 ADLIATASGD-----KTVRLWDARSGKCSQQAELS---GEN--INITYKPDGTHIAVGNRDD-----ELTILDVRKFKPI 143 (233)
Q Consensus 79 ~~~l~sg~~d-----~~i~iwd~~~~~~~~~~~~~---~~~--~~~~~~~~~~~l~~~~~d~-----~i~i~d~~~~~~~ 143 (233)
..+++.|+.+ ..+..||+.+.+........ .+. ..++. -+++.++.|+.++ .+..||+.+.+..
T Consensus 229 ~~lYvfGG~~~~~~~ndv~~yD~~t~~W~~l~~~~~~P~~R~~h~~~~-~~~~iYv~GG~~~~~~~~~~~~yd~~t~~W~ 307 (470)
T PLN02193 229 STLYVFGGRDASRQYNGFYSFDTTTNEWKLLTPVEEGPTPRSFHSMAA-DEENVYVFGGVSATARLKTLDSYNIVDKKWF 307 (470)
T ss_pred CEEEEECCCCCCCCCccEEEEECCCCEEEEcCcCCCCCCCccceEEEE-ECCEEEEECCCCCCCCcceEEEEECCCCEEE
Confidence 4566777765 35778898877654422211 111 11222 2445555666542 3667887665433
Q ss_pred eeeecC----ceeeEEEECCCCCEEEEEeCC----CeEEEEecCCce--eeeEEe-eecCceeEEEECCCCCEEEEeeCC
Q 026765 144 HRRKFG----YEVNEIAWNMTGEMFFLTTGN----GTVEVLTYPSLR--PLDTVV-AHTAGCYCIAIDPMGRYFAVGSAD 212 (233)
Q Consensus 144 ~~~~~~----~~~~~~~~~~~~~~~~~~~~~----~~v~~~~~~~~~--~~~~~~-~~~~~v~~i~~~p~~~~las~s~d 212 (233)
...... ..........+++.++.++.+ ..+.+||..+.+ .+...- .........+...++++++.|+.+
T Consensus 308 ~~~~~~~~~~~R~~~~~~~~~gkiyviGG~~g~~~~dv~~yD~~t~~W~~~~~~g~~P~~R~~~~~~~~~~~iyv~GG~~ 387 (470)
T PLN02193 308 HCSTPGDSFSIRGGAGLEVVQGKVWVVYGFNGCEVDDVHYYDPVQDKWTQVETFGVRPSERSVFASAAVGKHIVIFGGEI 387 (470)
T ss_pred eCCCCCCCCCCCCCcEEEEECCcEEEEECCCCCccCceEEEECCCCEEEEeccCCCCCCCcceeEEEEECCEEEEECCcc
Confidence 211100 000111112356677776644 457788876532 221110 000111111122246677777753
Q ss_pred --------------CcEEEEecCCcE
Q 026765 213 --------------SLVSLWDISEML 224 (233)
Q Consensus 213 --------------g~v~iwd~~~~~ 224 (233)
..+.+||+.+.+
T Consensus 388 ~~~~~~~~~~~~~~ndv~~~D~~t~~ 413 (470)
T PLN02193 388 AMDPLAHVGPGQLTDGTFALDTETLQ 413 (470)
T ss_pred CCccccccCccceeccEEEEEcCcCE
Confidence 247788887653
No 471
>TIGR03032 conserved hypothetical protein TIGR03032. This protein family is uncharacterized. A number of motifs are conserved perfectly among all member sequences. The function of this protein is unknown.
Probab=74.47 E-value=42 Score=26.75 Aligned_cols=47 Identities=26% Similarity=0.306 Sum_probs=32.8
Q ss_pred CEEEEEeCCCeEEEEECCCCeeeeeeeecCCeeEEEECCCCCeEEEEcC
Q 026765 80 DLIATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVGNR 128 (233)
Q Consensus 80 ~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 128 (233)
++.++=+..|.+.-+|..+|+........+....++|. |++++++.+
T Consensus 214 rLwvldsgtGev~~vD~~~G~~e~Va~vpG~~rGL~f~--G~llvVgmS 260 (335)
T TIGR03032 214 KLWLLNSGRGELGYVDPQAGKFQPVAFLPGFTRGLAFA--GDFAFVGLS 260 (335)
T ss_pred eEEEEECCCCEEEEEcCCCCcEEEEEECCCCCccccee--CCEEEEEec
Confidence 45666677778888887777666656666666677776 777776654
No 472
>PF14779 BBS1: Ciliary BBSome complex subunit 1
Probab=73.45 E-value=20 Score=27.50 Aligned_cols=56 Identities=14% Similarity=0.247 Sum_probs=37.8
Q ss_pred CeEEEEcCCCcEEEEEcCCCeeeeeeecCceeeEEEE--CC--CCCEEEEEeCCCeEEEE
Q 026765 121 THIAVGNRDDELTILDVRKFKPIHRRKFGYEVNEIAW--NM--TGEMFFLTTGNGTVEVL 176 (233)
Q Consensus 121 ~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~--~~--~~~~~~~~~~~~~v~~~ 176 (233)
..++.|++++.+.+.|..........+.......+.. .. -+-.+++++.||.|+..
T Consensus 196 scLViGTE~~~i~iLd~~af~il~~~~lpsvPv~i~~~G~~devdyRI~Va~Rdg~iy~i 255 (257)
T PF14779_consen 196 SCLVIGTESGEIYILDPQAFTILKQVQLPSVPVFISVSGQYDEVDYRIVVACRDGKIYTI 255 (257)
T ss_pred ceEEEEecCCeEEEECchhheeEEEEecCCCceEEEEEeeeeccceEEEEEeCCCEEEEE
Confidence 4789999999999999888877776665432222211 12 22357788889888764
No 473
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=72.96 E-value=53 Score=27.21 Aligned_cols=150 Identities=11% Similarity=0.147 Sum_probs=0.0
Q ss_pred cCcEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCe-eeeeeeecCCeeEEEECCCCCeEEEEcCCCcEEEEEcC------
Q 026765 66 ADSVDQLCWDPKHADLIATASGDKTVRLWDARSGK-CSQQAELSGENINITYKPDGTHIAVGNRDDELTILDVR------ 138 (233)
Q Consensus 66 ~~~v~~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~------ 138 (233)
......+...++ +.+++.+..-..++-||-.... .............+.+.+++..++++...+.+.--|-.
T Consensus 238 ~Gsf~~v~~~~d-G~~~~vg~~G~~~~s~d~G~~~W~~~~~~~~~~l~~v~~~~dg~l~l~g~~G~l~~S~d~G~~~~~~ 316 (398)
T PLN00033 238 TGTFSTVNRSPD-GDYVAVSSRGNFYLTWEPGQPYWQPHNRASARRIQNMGWRADGGLWLLTRGGGLYVSKGTGLTEEDF 316 (398)
T ss_pred ccceeeEEEcCC-CCEEEEECCccEEEecCCCCcceEEecCCCccceeeeeEcCCCCEEEEeCCceEEEecCCCCccccc
Q ss_pred CCeeeeeeecCceeeEEEECCCCCEEEEEeCCCeEEEEec-CCceeeeEEeeecCceeEEEECCCCCEEEEeeCCCcEE
Q 026765 139 KFKPIHRRKFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTY-PSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSADSLVS 216 (233)
Q Consensus 139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~~~~~~~~~~~v~~i~~~p~~~~las~s~dg~v~ 216 (233)
.............+..+.+..++..+++|...-..+--|- .+.+....-..-....+.+.|.++++.+++|...-.++
T Consensus 317 ~f~~~~~~~~~~~l~~v~~~~d~~~~a~G~~G~v~~s~D~G~tW~~~~~~~~~~~~ly~v~f~~~~~g~~~G~~G~il~ 395 (398)
T PLN00033 317 DFEEADIKSRGFGILDVGYRSKKEAWAAGGSGILLRSTDGGKSWKRDKGADNIAANLYSVKFFDDKKGFVLGNDGVLLR 395 (398)
T ss_pred ceeecccCCCCcceEEEEEcCCCcEEEEECCCcEEEeCCCCcceeEccccCCCCcceeEEEEcCCCceEEEeCCcEEEE
No 474
>COG5290 IkappaB kinase complex, IKAP component [Transcription]
Probab=72.93 E-value=75 Score=28.93 Aligned_cols=29 Identities=3% Similarity=0.213 Sum_probs=19.5
Q ss_pred cccEEEEEECcCCCEEEEEeCCCCEEEEe
Q 026765 20 KKKVHSVAWNCTGTKLASGSVDQTARVWH 48 (233)
Q Consensus 20 ~~~V~~~~~~~~~~~l~s~~~D~~v~vW~ 48 (233)
.+.|-+.+||.|.+.++..-.++.|-+.+
T Consensus 112 ~nGIvaa~wS~DE~~~cvvt~~r~il~~~ 140 (1243)
T COG5290 112 SNGIVAASWSADEKTWCVVTSTREILLFD 140 (1243)
T ss_pred cCceEEEeeccCCceEEEEEcCceEEEEe
Confidence 45566777888877665555567776665
No 475
>PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast). It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex [].
Probab=71.89 E-value=72 Score=28.33 Aligned_cols=154 Identities=13% Similarity=0.180 Sum_probs=80.0
Q ss_pred cccEEEEEECcCCCEEEEEeCCCCEEEEecccCCCCceeeEEEecCcC-cEEEEEEcC-----CCCCEEEEEeC---C-C
Q 026765 20 KKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHAD-SVDQLCWDP-----KHADLIATASG---D-K 89 (233)
Q Consensus 20 ~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~-~v~~~~~~~-----~~~~~l~sg~~---d-~ 89 (233)
.+.|-.+.|.++++.++..-.+|.|.+|+.+......+..... .+.. -++. .|.+ ++..++++-+. + -
T Consensus 129 ~~kvv~Ik~~~~~~~I~vvl~nG~i~~~d~~~~~l~~~~~l~~-~~~~~v~ys-~fv~~~~~~~~~~~ll~v~~~~~~k~ 206 (670)
T PF10395_consen 129 DDKVVGIKFSSDGKIIYVVLENGSIQIYDFSENSLEKVPQLKL-KSSINVSYS-KFVNDFELENGKDLLLTVSQLSNSKL 206 (670)
T ss_pred ccceEEEEEecCCCEEEEEEcCCcEEEEecccccccccccccc-ccccceehh-hhhcccccccCCceEEEEEEcCCCcE
Confidence 6678899999999999999999999999983222221111111 1222 1221 2221 22344444333 2 2
Q ss_pred eEEEEEC--CCCeeeeee--eecC---CeeEEEECCCCCeEEEEcCCCcEEEEEcCCCeeeeeeecCcee-----eEEEE
Q 026765 90 TVRLWDA--RSGKCSQQA--ELSG---ENINITYKPDGTHIAVGNRDDELTILDVRKFKPIHRRKFGYEV-----NEIAW 157 (233)
Q Consensus 90 ~i~iwd~--~~~~~~~~~--~~~~---~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~~~~-----~~~~~ 157 (233)
.++++.+ ....+.... .... .....++. +|....- .++.+.+|++...+.........-+ ..+++
T Consensus 207 ~ykL~~l~~~~~~~~El~s~~~e~~~~~~s~f~Y~-~G~LY~l--~~~~i~~ysip~f~~~~tI~l~~ii~~~~~~~vSl 283 (670)
T PF10395_consen 207 SYKLISLSNESSSIFELSSTILENFGLEDSKFCYQ-FGKLYQL--SKKTISSYSIPNFQIQKTISLPSIIDKESDDLVSL 283 (670)
T ss_pred EEEEEEeccCCcceEEeehheeccCCcccceEEEe-CCEEEEE--eCCEEEEEEcCCceEEEEEEechhhccccccceEe
Confidence 4677887 222221110 1111 11123332 4443322 6678999998877766555443111 12233
Q ss_pred -CCCCCEEEEEeCCCeEEEEecC
Q 026765 158 -NMTGEMFFLTTGNGTVEVLTYP 179 (233)
Q Consensus 158 -~~~~~~~~~~~~~~~v~~~~~~ 179 (233)
.|..+.++.+. ++.++++|+.
T Consensus 284 ~~~s~nRvLLs~-~nkIyLld~~ 305 (670)
T PF10395_consen 284 KPPSPNRVLLSV-NNKIYLLDLK 305 (670)
T ss_pred ecCCCCeEEEEc-CCEEEEEeeh
Confidence 34455555554 5588888864
No 476
>PLN02153 epithiospecifier protein
Probab=71.70 E-value=50 Score=26.42 Aligned_cols=24 Identities=13% Similarity=0.250 Sum_probs=15.4
Q ss_pred CCEEEEEeCC-----------CeEEEEECCCCeee
Q 026765 79 ADLIATASGD-----------KTVRLWDARSGKCS 102 (233)
Q Consensus 79 ~~~l~sg~~d-----------~~i~iwd~~~~~~~ 102 (233)
.++++.|+.+ ..+.+||..+.+..
T Consensus 138 ~~iyv~GG~~~~~~~~~~~~~~~v~~yd~~~~~W~ 172 (341)
T PLN02153 138 NHVYVFGGVSKGGLMKTPERFRTIEAYNIADGKWV 172 (341)
T ss_pred CEEEEECCccCCCccCCCcccceEEEEECCCCeEe
Confidence 3566777754 24678898876554
No 477
>PF11635 Med16: Mediator complex subunit 16; InterPro: IPR021665 Mediator is a large complex of up to 33 proteins that is conserved from plants through fungi to humans - the number and representation of individual subunits varying with species [],[]. It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Med16 is one of the subunits of the Tail portion of the Mediator complex and is required for lipopolysaccharide gene-expression []. Several members including the human protein, Q9Y2X0 from SWISSPROT, have one or more WD40 domains on them, PF00400 from PFAM.
Probab=71.19 E-value=82 Score=28.65 Aligned_cols=67 Identities=12% Similarity=0.081 Sum_probs=48.1
Q ss_pred ceeeEEEECCCCCEEEEEeCCCeEEEEecCCceeeeEE----e-----------e----ecCceeEEEECCCCCEEEEee
Q 026765 150 YEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTV----V-----------A----HTAGCYCIAIDPMGRYFAVGS 210 (233)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~----~-----------~----~~~~v~~i~~~p~~~~las~s 210 (233)
..|..+.-..-+..++..-.||+|.++|..+.+.+... . | +...+..++|||.+..++.-.
T Consensus 260 ~~V~si~~~~~~~~v~~~~~DGsI~~~dr~t~~~~~~~~~~~~~~~~v~s~~~~Gf~fp~~~~~~~vafSPt~c~~v~~~ 339 (753)
T PF11635_consen 260 KRVVSITSPELDIVVAFAFSDGSIEFRDRNTMKELNETRTNGEPPNTVTSLFQAGFHFPCIQPPLHVAFSPTMCSLVQID 339 (753)
T ss_pred CeEEEEEecccCcEEEEEEcCCeEEEEecCcchhhcccccccCCccccccccccccccccCCCCceEEECcccceEEEEe
Confidence 34666666667778999999999999998776544332 0 0 011233588999999999999
Q ss_pred CCCcEE
Q 026765 211 ADSLVS 216 (233)
Q Consensus 211 ~dg~v~ 216 (233)
.+|.+.
T Consensus 340 ~~~~~~ 345 (753)
T PF11635_consen 340 EDGKTK 345 (753)
T ss_pred cCCCce
Confidence 999866
No 478
>PF14779 BBS1: Ciliary BBSome complex subunit 1
Probab=71.04 E-value=34 Score=26.36 Aligned_cols=57 Identities=14% Similarity=0.179 Sum_probs=37.7
Q ss_pred CEEEEEeCCCeEEEEecCCceeeeEEeeecCceeEEE---ECCCCCEEEEeeCCCcEEEE
Q 026765 162 EMFFLTTGNGTVEVLTYPSLRPLDTVVAHTAGCYCIA---IDPMGRYFAVGSADSLVSLW 218 (233)
Q Consensus 162 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~v~~i~---~~p~~~~las~s~dg~v~iw 218 (233)
..+++|+++|.+.+.|......+.++.-..-++.-.+ |.--+-.|+.+++||.|++-
T Consensus 196 scLViGTE~~~i~iLd~~af~il~~~~lpsvPv~i~~~G~~devdyRI~Va~Rdg~iy~i 255 (257)
T PF14779_consen 196 SCLVIGTESGEIYILDPQAFTILKQVQLPSVPVFISVSGQYDEVDYRIVVACRDGKIYTI 255 (257)
T ss_pred ceEEEEecCCeEEEECchhheeEEEEecCCCceEEEEEeeeeccceEEEEEeCCCEEEEE
Confidence 4689999999999999877766666554444442222 21112357788899988764
No 479
>PF14269 Arylsulfotran_2: Arylsulfotransferase (ASST)
Probab=70.80 E-value=32 Score=27.15 Aligned_cols=71 Identities=11% Similarity=0.202 Sum_probs=45.4
Q ss_pred ceeeEEEECCCCCEEEEEeCCCeEEEEecCCceeeeEEeeecCc-----eeEEEECCCCCEEEEeeCCCcEEEEec
Q 026765 150 YEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAHTAG-----CYCIAIDPMGRYFAVGSADSLVSLWDI 220 (233)
Q Consensus 150 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~-----v~~i~~~p~~~~las~s~dg~v~iwd~ 220 (233)
..++++....+|+++++.-.-..|.+++.++++.+-.+.+.... -...++-.+-+++-.+..++.|.|+|=
T Consensus 144 ~HiNsV~~~~~G~yLiS~R~~~~i~~I~~~tG~I~W~lgG~~~~df~~~~~~f~~QHdar~~~~~~~~~~IslFDN 219 (299)
T PF14269_consen 144 FHINSVDKDDDGDYLISSRNTSTIYKIDPSTGKIIWRLGGKRNSDFTLPATNFSWQHDARFLNESNDDGTISLFDN 219 (299)
T ss_pred cEeeeeeecCCccEEEEecccCEEEEEECCCCcEEEEeCCCCCCcccccCCcEeeccCCEEeccCCCCCEEEEEcC
Confidence 35788888889999988888888988888887776665443111 011333334344444456666666664
No 480
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=69.98 E-value=67 Score=27.14 Aligned_cols=108 Identities=11% Similarity=0.107 Sum_probs=56.0
Q ss_pred CCEEEEEeCCCCEEEE-ecccCCCCceeeEEEecC-cCcEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCeeeeeeeecC
Q 026765 32 GTKLASGSVDQTARVW-HIEPHGHGKVKDIELRGH-ADSVDQLCWDPKHADLIATASGDKTVRLWDARSGKCSQQAELSG 109 (233)
Q Consensus 32 ~~~l~s~~~D~~v~vW-~~~~~~~~~~~~~~~~~h-~~~v~~~~~~~~~~~~l~sg~~d~~i~iwd~~~~~~~~~~~~~~ 109 (233)
|.-|..++.||-|.-| |+...........+...- ...+..+.-. +..+-+++-..+|++.++.....+..-....-.
T Consensus 280 g~SLLv~~~dG~vsQWFdvr~~~~p~l~h~R~f~l~pa~~~~l~pe-~~rkgF~~l~~~G~L~~f~st~~~~lL~~~~~~ 358 (733)
T COG4590 280 GFSLLVVHEDGLVSQWFDVRRDGQPHLNHIRNFKLAPAEVQFLLPE-TNRKGFYSLYRNGTLQSFYSTSEKLLLFERAYQ 358 (733)
T ss_pred ceeEEEEcCCCceeeeeeeecCCCCcceeeeccccCcccceeeccc-cccceEEEEcCCCceeeeecccCcceehhhhhc
Confidence 3457778889999888 443322222211111111 1222222211 223455666777887776544333221111112
Q ss_pred CeeEEEECCCCCeEEEEcCCCcEEEEEcCCCe
Q 026765 110 ENINITYKPDGTHIAVGNRDDELTILDVRKFK 141 (233)
Q Consensus 110 ~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~ 141 (233)
...-++++|.+.++++-. .++++++.+++..
T Consensus 359 ~~~~~~~Sp~~~~Ll~e~-~gki~~~~l~Nr~ 389 (733)
T COG4590 359 APQLVAMSPNQAYLLSED-QGKIRLAQLENRN 389 (733)
T ss_pred CcceeeeCcccchheeec-CCceEEEEecCCC
Confidence 233478899999887654 4578888876543
No 481
>TIGR03547 muta_rot_YjhT mutatrotase, YjhT family. Members of this protein family contain multiple copies of the beta-propeller-forming Kelch repeat. All are full-length homologs to YjhT of Escherichia coli, which has been identified as a mutarotase for sialic acid. This protein improves bacterial ability to obtain host sialic acid, and thus serves as a virulence factor. Some bacteria carry what appears to be a cyclically permuted homolog of this protein.
Probab=68.52 E-value=60 Score=26.00 Aligned_cols=40 Identities=13% Similarity=0.099 Sum_probs=20.4
Q ss_pred CeEEEEECCCCeeeeeeeecC-C--eeEEEECCCCCeEEEEcCC
Q 026765 89 KTVRLWDARSGKCSQQAELSG-E--NINITYKPDGTHIAVGNRD 129 (233)
Q Consensus 89 ~~i~iwd~~~~~~~~~~~~~~-~--~~~~~~~~~~~~l~~~~~d 129 (233)
..+.+||..+.+......... . ...++ ..+++..+.|+.+
T Consensus 168 ~~v~~YDp~t~~W~~~~~~p~~~r~~~~~~-~~~~~iyv~GG~~ 210 (346)
T TIGR03547 168 KNVLSYDPSTNQWRNLGENPFLGTAGSAIV-HKGNKLLLINGEI 210 (346)
T ss_pred ceEEEEECCCCceeECccCCCCcCCCceEE-EECCEEEEEeeee
Confidence 467889988776544322221 1 11222 2355666666653
No 482
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=68.08 E-value=47 Score=30.99 Aligned_cols=71 Identities=17% Similarity=0.340 Sum_probs=46.2
Q ss_pred CCCEEEEEeCCCeEEEEecCCceeeeEEe---eecCceeEEEECCCC------CEEEEeeCCCcEEEEecCCcEEEEeee
Q 026765 160 TGEMFFLTTGNGTVEVLTYPSLRPLDTVV---AHTAGCYCIAIDPMG------RYFAVGSADSLVSLWDISEMLCVRTFT 230 (233)
Q Consensus 160 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~---~~~~~v~~i~~~p~~------~~las~s~dg~v~iwd~~~~~~i~~~~ 230 (233)
+...++++..+|.+..+-....-....+. .....|.|+++.++. ++++.|+.|+++++..+..-.++..+.
T Consensus 548 nr~qiVvalSngelvyfe~d~sgql~E~~er~tl~~~vac~ai~~~~~g~krsrfla~a~~d~~vriisL~p~d~l~~ls 627 (1205)
T KOG1898|consen 548 NRRQIVVALSNGELVYFEGDVSGQLNEFTERVTLSTDVACLAIGQDPEGEKRSRFLALASVDNMVRIISLDPSDCLQPLS 627 (1205)
T ss_pred cceEEEEEccCCeEEEEEeccCccceeeeeeeeeceeehhhccCCCCcchhhcceeeeeccccceeEEEecCcceEEEcc
Confidence 34456666666666655443222222222 123457788888765 579999999999999998777776654
No 483
>PLN02153 epithiospecifier protein
Probab=67.98 E-value=61 Score=25.93 Aligned_cols=24 Identities=13% Similarity=0.167 Sum_probs=15.7
Q ss_pred CCEEEEEeCC-----CeEEEEECCCCeee
Q 026765 79 ADLIATASGD-----KTVRLWDARSGKCS 102 (233)
Q Consensus 79 ~~~l~sg~~d-----~~i~iwd~~~~~~~ 102 (233)
.++++.|+.+ ..+.+||..+.+..
T Consensus 86 ~~iyv~GG~~~~~~~~~v~~yd~~t~~W~ 114 (341)
T PLN02153 86 TKLYIFGGRDEKREFSDFYSYDTVKNEWT 114 (341)
T ss_pred CEEEEECCCCCCCccCcEEEEECCCCEEE
Confidence 4566777753 34678898876554
No 484
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=67.18 E-value=1e+02 Score=28.14 Aligned_cols=169 Identities=17% Similarity=0.187 Sum_probs=0.0
Q ss_pred CCCCCccceeeeCccccEEEEEECc-CCCEEEEEeCCCCEEEEecccCCCCceeeEEEecCcCcEE-----------EEE
Q 026765 6 IPFKNLHSREYTGHKKKVHSVAWNC-TGTKLASGSVDQTARVWHIEPHGHGKVKDIELRGHADSVD-----------QLC 73 (233)
Q Consensus 6 ~~~~~~~~~~~~~H~~~V~~~~~~~-~~~~l~s~~~D~~v~vW~~~~~~~~~~~~~~~~~h~~~v~-----------~~~ 73 (233)
.|...+......|+ +.-.++|+| +..+||.....|..-||++..........+.+..+...-. .+.
T Consensus 133 ~~l~~i~~~~tgg~--~~aDv~FnP~~~~q~AiVD~~G~Wsvw~i~~~~~~~~~~~~~~~~~~gsi~~d~~e~s~w~rI~ 210 (765)
T PF10214_consen 133 NPLLTISSSDTGGF--PHADVAFNPWDQRQFAIVDEKGNWSVWDIKGRPKRKSSNLRLSRNISGSIIFDPEELSNWKRIL 210 (765)
T ss_pred ceeEEechhhcCCC--ccceEEeccCccceEEEEeccCcEEEEEeccccccCCcceeeccCCCccccCCCcccCcceeeE
Q ss_pred EcCCCCCEEEEEeCCCeEEEEECCCCee---eeeeeecCCeeEEEECCCCCeEEEEcCCCcEEEEEcCC----Ceeeeee
Q 026765 74 WDPKHADLIATASGDKTVRLWDARSGKC---SQQAELSGENINITYKPDGTHIAVGNRDDELTILDVRK----FKPIHRR 146 (233)
Q Consensus 74 ~~~~~~~~l~sg~~d~~i~iwd~~~~~~---~~~~~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~----~~~~~~~ 146 (233)
|.++...+|+. ....+.++|+.+... .........+..+.-+|.....+----...|.++++.. ..++-..
T Consensus 211 W~~~~~~lLv~--~r~~l~~~d~~~~~~~~~l~~~~~~~~IlDv~~~~~~~~~~FiLTs~eiiw~~~~~~~~~~~~llSw 288 (765)
T PF10214_consen 211 WVSDSNRLLVC--NRSKLMLIDFESNWQTEYLVTAKTWSWILDVKRSPDNPSHVFILTSKEIIWLDVKSSSEKLTRLLSW 288 (765)
T ss_pred ecCCCCEEEEE--cCCceEEEECCCCCccchhccCCChhheeeEEecCCccceEEEEecCeEEEEEccCCCCCeeeeeec
Q ss_pred ec-------CceeeEEEE-CCCCCEEEEEeCCCeEEEEec
Q 026765 147 KF-------GYEVNEIAW-NMTGEMFFLTTGNGTVEVLTY 178 (233)
Q Consensus 147 ~~-------~~~~~~~~~-~~~~~~~~~~~~~~~v~~~~~ 178 (233)
+| ......... ...--.++..-.+..+.+|.+
T Consensus 289 kH~~d~~D~tLrl~~~~~~~~~~~~~lyS~~~~~v~v~~f 328 (765)
T PF10214_consen 289 KHFRDPEDPTLRLSVQKVGDTDFVVFLYSRLNPLVYVYFF 328 (765)
T ss_pred ccccCCCCCceEEEEEEcCCCEEEEEEEcCCCCcEEEEEE
No 485
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=66.87 E-value=55 Score=25.01 Aligned_cols=114 Identities=18% Similarity=0.176 Sum_probs=54.4
Q ss_pred ECcCCCEEEEEeC-C--CCEEEEecccCC--CCceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCCeEEEEECCCC-ee
Q 026765 28 WNCTGTKLASGSV-D--QTARVWHIEPHG--HGKVKDIELRGHADSVDQLCWDPKHADLIATASGDKTVRLWDARSG-KC 101 (233)
Q Consensus 28 ~~~~~~~l~s~~~-D--~~v~vW~~~~~~--~~~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~~i~iwd~~~~-~~ 101 (233)
|-++|++|.+|+. | +.+|+++..... .........-.....=..+..-|++..+++.|.......+|.-+.. ..
T Consensus 74 ~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~~~L~DG~vlIvGG~~~~t~E~~P~~~~~~~ 153 (243)
T PF07250_consen 74 FLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTATTLPDGRVLIVGGSNNPTYEFWPPKGPGPG 153 (243)
T ss_pred CCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECcccccCCCccccceECCCCCEEEEeCcCCCcccccCCccCCCC
Confidence 3467888888875 3 457888754311 1111100000111222233345666544444444445666654321 11
Q ss_pred eeeee-ec----CCe---e-EEEECCCCCeEEEEcCCCcEEEEEcCCCeee
Q 026765 102 SQQAE-LS----GEN---I-NITYKPDGTHIAVGNRDDELTILDVRKFKPI 143 (233)
Q Consensus 102 ~~~~~-~~----~~~---~-~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~~ 143 (233)
...+. .. ... + -+...|+|+.++.+..+. .+||..+.+.+
T Consensus 154 ~~~~~~l~~~~~~~~~nlYP~~~llPdG~lFi~an~~s--~i~d~~~n~v~ 202 (243)
T PF07250_consen 154 PVTLPFLSQTSDTLPNNLYPFVHLLPDGNLFIFANRGS--IIYDYKTNTVV 202 (243)
T ss_pred ceeeecchhhhccCccccCceEEEcCCCCEEEEEcCCc--EEEeCCCCeEE
Confidence 11111 00 011 1 256689999988777654 56677665443
No 486
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=66.83 E-value=79 Score=26.76 Aligned_cols=52 Identities=6% Similarity=-0.011 Sum_probs=32.9
Q ss_pred CeeEEEECCCCCeEEEEcCCCcEEEEEcCCCee--eeeee------cCceeeEEEECCCC
Q 026765 110 ENINITYKPDGTHIAVGNRDDELTILDVRKFKP--IHRRK------FGYEVNEIAWNMTG 161 (233)
Q Consensus 110 ~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~~~~--~~~~~------~~~~~~~~~~~~~~ 161 (233)
....++|.|+++.+++--..|.|.+++...... +.... -......++++|+.
T Consensus 31 ~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF 90 (454)
T TIGR03606 31 KPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDF 90 (454)
T ss_pred CceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCc
Confidence 457799999997776665568898887644321 11111 12345778898875
No 487
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=66.34 E-value=30 Score=21.76 Aligned_cols=40 Identities=13% Similarity=-0.010 Sum_probs=25.0
Q ss_pred CCCcEEEEEcCCCeeeeeeecCceeeEEEECCCCCEEEEE
Q 026765 128 RDDELTILDVRKFKPIHRRKFGYEVNEIAWNMTGEMFFLT 167 (233)
Q Consensus 128 ~d~~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (233)
.+|.+.-||+.+.+......--.-.+.++.++++++++++
T Consensus 35 ~~GRll~ydp~t~~~~vl~~~L~fpNGVals~d~~~vlv~ 74 (89)
T PF03088_consen 35 PTGRLLRYDPSTKETTVLLDGLYFPNGVALSPDESFVLVA 74 (89)
T ss_dssp --EEEEEEETTTTEEEEEEEEESSEEEEEE-TTSSEEEEE
T ss_pred CCcCEEEEECCCCeEEEehhCCCccCeEEEcCCCCEEEEE
Confidence 3567788888776543222222357889999999977665
No 488
>PF03088 Str_synth: Strictosidine synthase; InterPro: IPR018119 This entry represents a conserved region found in strictosidine synthase (4.3.3.2 from EC), a key enzyme in alkaloid biosynthesis. It catalyses the Pictet-Spengler stereospecific condensation of tryptamine with secologanin to form strictosidine []. The structure of the native enzyme from the Indian medicinal plant Rauvolfia serpentina (Serpentwood) (Devilpepper) represents the first example of a six-bladed four-stranded beta-propeller fold from the plant kingdom [].; GO: 0016844 strictosidine synthase activity, 0009058 biosynthetic process; PDB: 2FPB_A 2V91_B 2FP8_A 3V1S_B 2FPC_A 2VAQ_A 2FP9_B.
Probab=65.52 E-value=31 Score=21.68 Aligned_cols=44 Identities=9% Similarity=0.064 Sum_probs=27.2
Q ss_pred EEEeCCCeEEEEECCCCeeeeeeeecCCeeEEEECCCCCeEEEE
Q 026765 83 ATASGDKTVRLWDARSGKCSQQAELSGENINITYKPDGTHIAVG 126 (233)
Q Consensus 83 ~sg~~d~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 126 (233)
+.+..+|.+..||..+++.......=..+..+++++|+..++++
T Consensus 31 le~~~~GRll~ydp~t~~~~vl~~~L~fpNGVals~d~~~vlv~ 74 (89)
T PF03088_consen 31 LEGRPTGRLLRYDPSTKETTVLLDGLYFPNGVALSPDESFVLVA 74 (89)
T ss_dssp HHT---EEEEEEETTTTEEEEEEEEESSEEEEEE-TTSSEEEEE
T ss_pred ecCCCCcCEEEEECCCCeEEEehhCCCccCeEEEcCCCCEEEEE
Confidence 34566788999999988754433322345669999999876644
No 489
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=65.28 E-value=42 Score=26.89 Aligned_cols=57 Identities=16% Similarity=0.257 Sum_probs=37.2
Q ss_pred CCCEEEEEeCCCeEEEEecCCceeeeE---Ee-eecCceeEEEECCCCCEEEEeeCCCcEE
Q 026765 160 TGEMFFLTTGNGTVEVLTYPSLRPLDT---VV-AHTAGCYCIAIDPMGRYFAVGSADSLVS 216 (233)
Q Consensus 160 ~~~~~~~~~~~~~v~~~~~~~~~~~~~---~~-~~~~~v~~i~~~p~~~~las~s~dg~v~ 216 (233)
.+++++..-..+.|..+.++....+.. +. .....+..+++.|||.++++-+.+|.|.
T Consensus 270 ~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~pDG~Lyv~~d~~G~iy 330 (331)
T PF07995_consen 270 RGDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGGRPRDVAQGPDGALYVSDDSDGKIY 330 (331)
T ss_dssp TTEEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS-EEEEEEETTSEEEEEE-TTTTEE
T ss_pred cCcEEEecCCCCEEEEEeeecCCCccceEEccccCCCCceEEEEcCCCeEEEEECCCCeEe
Confidence 355666666677888887764433222 11 2344788999999999888888888764
No 490
>PLN02193 nitrile-specifier protein
Probab=63.52 E-value=92 Score=26.40 Aligned_cols=64 Identities=11% Similarity=0.036 Sum_probs=34.5
Q ss_pred CCEEEEEeCCC-----eEEEEECCCCeeeeeeeecC-----CeeEEEECCCCCeEEEEcCC----CcEEEEEcCCCeee
Q 026765 79 ADLIATASGDK-----TVRLWDARSGKCSQQAELSG-----ENINITYKPDGTHIAVGNRD----DELTILDVRKFKPI 143 (233)
Q Consensus 79 ~~~l~sg~~d~-----~i~iwd~~~~~~~~~~~~~~-----~~~~~~~~~~~~~l~~~~~d----~~i~i~d~~~~~~~ 143 (233)
.++++.|+.++ .+..||+.+.+......... ....++. .+++.++.++.+ ..+.+||+.+.+..
T Consensus 279 ~~iYv~GG~~~~~~~~~~~~yd~~t~~W~~~~~~~~~~~~R~~~~~~~-~~gkiyviGG~~g~~~~dv~~yD~~t~~W~ 356 (470)
T PLN02193 279 ENVYVFGGVSATARLKTLDSYNIVDKKWFHCSTPGDSFSIRGGAGLEV-VQGKVWVVYGFNGCEVDDVHYYDPVQDKWT 356 (470)
T ss_pred CEEEEECCCCCCCCcceEEEEECCCCEEEeCCCCCCCCCCCCCcEEEE-ECCcEEEEECCCCCccCceEEEECCCCEEE
Confidence 45667777543 46678887765433211100 0111222 255666666654 45788998775543
No 491
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=62.63 E-value=76 Score=25.14 Aligned_cols=64 Identities=9% Similarity=0.103 Sum_probs=34.1
Q ss_pred CCEEEEEeC-----CCeEEEEECCCCeeeeeeeecC--CeeEEEECCCCCeEEEEcCCC----cEEEEEcCCCee
Q 026765 79 ADLIATASG-----DKTVRLWDARSGKCSQQAELSG--ENINITYKPDGTHIAVGNRDD----ELTILDVRKFKP 142 (233)
Q Consensus 79 ~~~l~sg~~-----d~~i~iwd~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~d~----~i~i~d~~~~~~ 142 (233)
.++.+.|+. ...+..||..+.+......... .....+...+++..+.|+.++ .+..||+.+.+.
T Consensus 124 ~~iYv~GG~~~~~~~~~v~~yd~~~~~W~~~~~~p~~~r~~~~~~~~~~~iYv~GG~~~~~~~~~~~yd~~~~~W 198 (323)
T TIGR03548 124 GTLYVGGGNRNGKPSNKSYLFNLETQEWFELPDFPGEPRVQPVCVKLQNELYVFGGGSNIAYTDGYKYSPKKNQW 198 (323)
T ss_pred CEEEEEeCcCCCccCceEEEEcCCCCCeeECCCCCCCCCCcceEEEECCEEEEEcCCCCccccceEEEecCCCee
Confidence 356666664 2357788988766543322211 111122233556667777653 246788876543
No 492
>PRK13684 Ycf48-like protein; Provisional
Probab=62.06 E-value=82 Score=25.31 Aligned_cols=147 Identities=16% Similarity=0.231 Sum_probs=69.7
Q ss_pred CcEEEEEEcCCCCCEEEEEeCCCeEEE-EECCCCeeeeee-eecCCeeEEEECCCCCeEEEEcCCCcEEEEEcCC---Ce
Q 026765 67 DSVDQLCWDPKHADLIATASGDKTVRL-WDARSGKCSQQA-ELSGENINITYKPDGTHIAVGNRDDELTILDVRK---FK 141 (233)
Q Consensus 67 ~~v~~~~~~~~~~~~l~sg~~d~~i~i-wd~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~d~~i~i~d~~~---~~ 141 (233)
..+..+.+.|++ .++ ..+..|.+.. +|-......... ........+.+.++++.++++ ..|.+.+-.... .+
T Consensus 173 g~~~~i~~~~~g-~~v-~~g~~G~i~~s~~~gg~tW~~~~~~~~~~l~~i~~~~~g~~~~vg-~~G~~~~~s~d~G~sW~ 249 (334)
T PRK13684 173 GVVRNLRRSPDG-KYV-AVSSRGNFYSTWEPGQTAWTPHQRNSSRRLQSMGFQPDGNLWMLA-RGGQIRFNDPDDLESWS 249 (334)
T ss_pred ceEEEEEECCCC-eEE-EEeCCceEEEEcCCCCCeEEEeeCCCcccceeeeEcCCCCEEEEe-cCCEEEEccCCCCCccc
Confidence 356777777753 344 4445554432 222111121111 112334567888888776655 455554321222 12
Q ss_pred eeee--eecCceeeEEEECCCCCEEEEEeCCCeEEEEecCCceeeeEE---eeecCceeEEEECCCCCEEEEeeCCCcEE
Q 026765 142 PIHR--RKFGYEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTV---VAHTAGCYCIAIDPMGRYFAVGSADSLVS 216 (233)
Q Consensus 142 ~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~---~~~~~~v~~i~~~p~~~~las~s~dg~v~ 216 (233)
.+.. ......+..+.+.+++..++++ .+|.+.. ..+.++.-... ..-....+.+.+-.+++.++ .+..|.|-
T Consensus 250 ~~~~~~~~~~~~l~~v~~~~~~~~~~~G-~~G~v~~-S~d~G~tW~~~~~~~~~~~~~~~~~~~~~~~~~~-~G~~G~il 326 (334)
T PRK13684 250 KPIIPEITNGYGYLDLAYRTPGEIWAGG-GNGTLLV-SKDGGKTWEKDPVGEEVPSNFYKIVFLDPEKGFV-LGQRGVLL 326 (334)
T ss_pred cccCCccccccceeeEEEcCCCCEEEEc-CCCeEEE-eCCCCCCCeECCcCCCCCcceEEEEEeCCCceEE-ECCCceEE
Confidence 1111 0012346677888877655544 5564443 22222222111 11122456677766666655 45677776
Q ss_pred EEe
Q 026765 217 LWD 219 (233)
Q Consensus 217 iwd 219 (233)
-|+
T Consensus 327 ~~~ 329 (334)
T PRK13684 327 RYV 329 (334)
T ss_pred Eec
Confidence 665
No 493
>TIGR02608 delta_60_rpt delta-60 repeat domain. This domain occurs in tandem repeats, as many as 13, in proteins from Bdellovibrio bacteriovorus, Azotobacter vinelandii, Geobacter sulfurreducens, Pirellula sp. 1, Myxococcus xanthus, and others, many of which are Deltaproteobacteria. The periodicity of the repeat ranges from about 57 to 61 amino acids, and a core region of about 54 is represented by this model and seed alignment.
Probab=61.83 E-value=27 Score=19.70 Aligned_cols=19 Identities=32% Similarity=0.415 Sum_probs=16.1
Q ss_pred cEEEEEECcCCCEEEEEeC
Q 026765 22 KVHSVAWNCTGTKLASGSV 40 (233)
Q Consensus 22 ~V~~~~~~~~~~~l~s~~~ 40 (233)
.+++++.-|||+.++.|..
T Consensus 2 ~~~~~~~q~DGkIlv~G~~ 20 (55)
T TIGR02608 2 RAYAVAVQSDGKILVAGYV 20 (55)
T ss_pred ceEEEEECCCCcEEEEEEe
Confidence 4678899999999999964
No 494
>KOG3611 consensus Semaphorins [Signal transduction mechanisms]
Probab=61.41 E-value=1.3e+02 Score=27.35 Aligned_cols=73 Identities=12% Similarity=0.183 Sum_probs=46.5
Q ss_pred cccEEEEEEC----cCCC--EEEEEeCCCCE-EEEecccC--CCC-ceeeEEEecCcCcEEEEEEcCCCCCEEEEEeCCC
Q 026765 20 KKKVHSVAWN----CTGT--KLASGSVDQTA-RVWHIEPH--GHG-KVKDIELRGHADSVDQLCWDPKHADLIATASGDK 89 (233)
Q Consensus 20 ~~~V~~~~~~----~~~~--~l~s~~~D~~v-~vW~~~~~--~~~-~~~~~~~~~h~~~v~~~~~~~~~~~~l~sg~~d~ 89 (233)
....+.|+.+ +++. .|..|..+|+| |+=.+... ..+ .+.++++..+..+|..|..++..+ .|+.|+..+
T Consensus 407 ~~~~t~I~Vd~~~~~~~~ydVlflGTd~G~vlKvV~~~~~~~~~~~llEElqvf~~~~pI~~m~Ls~~~~-~LyVgs~~g 485 (737)
T KOG3611|consen 407 DYRLTQIVVDRVAGLDGNYDVLFLGTDAGTVLKVVSPGKESGKSNVLLEELQVFPDAEPIRSMQLSSKRG-SLYVGSRSG 485 (737)
T ss_pred cceEEEEEEEEecCCCCcEEEEEEecCCCeEEEEEecCCccCccceeEEEEeecCCCCceeEEEecccCC-eEEEEccCc
Confidence 5666777766 4454 47888889987 34333221 111 244555666778999999998754 566788777
Q ss_pred eEEE
Q 026765 90 TVRL 93 (233)
Q Consensus 90 ~i~i 93 (233)
-++|
T Consensus 486 V~qv 489 (737)
T KOG3611|consen 486 VVQV 489 (737)
T ss_pred EEEe
Confidence 6654
No 495
>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.
Probab=61.26 E-value=18 Score=18.41 Aligned_cols=21 Identities=24% Similarity=0.287 Sum_probs=15.7
Q ss_pred CCCEEEEeeCCCcEEEEecCC
Q 026765 202 MGRYFAVGSADSLVSLWDISE 222 (233)
Q Consensus 202 ~~~~las~s~dg~v~iwd~~~ 222 (233)
.+..+..++.||.+.-+|+++
T Consensus 20 ~~g~vyv~~~dg~l~ald~~t 40 (40)
T PF13570_consen 20 AGGRVYVGTGDGNLYALDAAT 40 (40)
T ss_dssp CTSEEEEE-TTSEEEEEETT-
T ss_pred ECCEEEEEcCCCEEEEEeCCC
Confidence 356788889999999998764
No 496
>PF01011 PQQ: PQQ enzyme repeat family.; InterPro: IPR002372 Pyrrolo-quinoline quinone (PQQ) is a redox coenzyme, which serves as a cofactor for a number of enzymes (quinoproteins) and particularly for some bacterial dehydrogenases [, ]. A number of bacterial quinoproteins belong to this family. Enzymes in this group have repeats of a beta propeller.; PDB: 1H4I_C 1H4J_E 1W6S_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A 1G72_A ....
Probab=59.94 E-value=22 Score=17.97 Aligned_cols=25 Identities=20% Similarity=0.247 Sum_probs=20.0
Q ss_pred EEEeeCCCcEEEEecCCcEEEEeee
Q 026765 206 FAVGSADSLVSLWDISEMLCVRTFT 230 (233)
Q Consensus 206 las~s~dg~v~iwd~~~~~~i~~~~ 230 (233)
+..++.||.|.-.|+++|+.+=.|+
T Consensus 3 v~~~~~~g~l~AlD~~TG~~~W~~~ 27 (38)
T PF01011_consen 3 VYVGTPDGYLYALDAKTGKVLWKFQ 27 (38)
T ss_dssp EEEETTTSEEEEEETTTTSEEEEEE
T ss_pred EEEeCCCCEEEEEECCCCCEEEeee
Confidence 4455889999999999998876664
No 497
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=59.39 E-value=49 Score=31.56 Aligned_cols=75 Identities=16% Similarity=0.301 Sum_probs=50.9
Q ss_pred cccEEEEEECcCCCEEEEEeCCCCEEEEecccCCC----Cc----ee------------eEEEe-cCcCcEEEEEEcCCC
Q 026765 20 KKKVHSVAWNCTGTKLASGSVDQTARVWHIEPHGH----GK----VK------------DIELR-GHADSVDQLCWDPKH 78 (233)
Q Consensus 20 ~~~V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~----~~----~~------------~~~~~-~h~~~v~~~~~~~~~ 78 (233)
.-.|+|+....+|..+++|- || .+|.+.-+.. .+ ++ ...++ .+.++|..++... .
T Consensus 178 g~~V~~I~~t~nGRIF~~G~-dg--~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID~-S 253 (1311)
T KOG1900|consen 178 GVSVNCITYTENGRIFFAGR-DG--NLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITIDN-S 253 (1311)
T ss_pred CceEEEEEeccCCcEEEeec-CC--CEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEecc-c
Confidence 56688999777787777765 44 5676532110 00 00 11234 5778999999975 3
Q ss_pred CCEEEEEeCCCeEEEEECCC
Q 026765 79 ADLIATASGDKTVRLWDARS 98 (233)
Q Consensus 79 ~~~l~sg~~d~~i~iwd~~~ 98 (233)
..++.+=+..++|++||+..
T Consensus 254 R~IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 254 RNILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred cceeeeeccCceEEEEEccC
Confidence 67888889999999999976
No 498
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=57.43 E-value=97 Score=24.70 Aligned_cols=206 Identities=14% Similarity=0.180 Sum_probs=112.8
Q ss_pred EEEEEECcCCCEEEEEeCCCCEEEEecccCCCC---ceeeEEEec-----CcCcEEEEEEcCCC-----------CCEEE
Q 026765 23 VHSVAWNCTGTKLASGSVDQTARVWHIEPHGHG---KVKDIELRG-----HADSVDQLCWDPKH-----------ADLIA 83 (233)
Q Consensus 23 V~~~~~~~~~~~l~s~~~D~~v~vW~~~~~~~~---~~~~~~~~~-----h~~~v~~~~~~~~~-----------~~~l~ 83 (233)
-+.|+|+|.+.+-++...-++..+||.++..+. ....+.++. -....+.+.|+... ...++
T Consensus 25 ~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~Fi 104 (336)
T TIGR03118 25 AWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRFL 104 (336)
T ss_pred cceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeEE
Confidence 468999999988888777889999998733211 112233332 12345666665321 12356
Q ss_pred EEeCCCeEEEEECCCCee---eeeeee----cCCeeE-EEEC--CCCCeEEE-EcCCCcEEEEEcCCCeeeee-------
Q 026765 84 TASGDKTVRLWDARSGKC---SQQAEL----SGENIN-ITYK--PDGTHIAV-GNRDDELTILDVRKFKPIHR------- 145 (233)
Q Consensus 84 sg~~d~~i~iwd~~~~~~---~~~~~~----~~~~~~-~~~~--~~~~~l~~-~~~d~~i~i~d~~~~~~~~~------- 145 (233)
.++.||+|.=|.-.-... ...... .+.++. +++. ..+.+|.. --..++|.++|-. .+++..
T Consensus 105 f~tEdGTisaW~p~v~~t~~~~~~~~~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g~IDVFd~~-f~~~~~~g~F~DP 183 (336)
T TIGR03118 105 FVTEDGTLSGWAPALGTTRMTRAEIVVDASQQGNVYKGLAVGPTGGGDYLYAANFRQGRIDVFKGS-FRPPPLPGSFIDP 183 (336)
T ss_pred EEeCCceEEeecCcCCcccccccEEEEccCCCcceeeeeEEeecCCCceEEEeccCCCceEEecCc-cccccCCCCccCC
Confidence 778999999998432221 111111 122332 4443 33455544 3456889999842 222110
Q ss_pred -eecCc---e---------eeEEEECCCCCEEEEEeCCCeEEEEecCCceeeeEEee--ecCceeEEEECC------CCC
Q 026765 146 -RKFGY---E---------VNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVA--HTAGCYCIAIDP------MGR 204 (233)
Q Consensus 146 -~~~~~---~---------~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~--~~~~v~~i~~~p------~~~ 204 (233)
+..++ . |+-..-.++.+.-+.+-+.|.|.++|.. +..++.+.. .-...+.++.-| .+.
T Consensus 184 ~iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~-G~l~~r~as~g~LNaPWG~a~APa~FG~~sg~ 262 (336)
T TIGR03118 184 ALPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLN-GQLLRRVASSGRLNAPWGLAIAPESFGSLSGA 262 (336)
T ss_pred CCCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcCC-CcEEEEeccCCcccCCceeeeChhhhCCCCCC
Confidence 01111 0 1111112333333445556888898864 555555532 223345666533 456
Q ss_pred EEEEeeCCCcEEEEecCCcEEEEeee
Q 026765 205 YFAVGSADSLVSLWDISEMLCVRTFT 230 (233)
Q Consensus 205 ~las~s~dg~v~iwd~~~~~~i~~~~ 230 (233)
+|+--=-||+|..||..+++.+-.+.
T Consensus 263 lLVGNFGDG~InaFD~~sG~~~g~L~ 288 (336)
T TIGR03118 263 LLVGNFGDGTINAYDPQSGAQLGQLL 288 (336)
T ss_pred eEEeecCCceeEEecCCCCceeeeec
Confidence 67766679999999999887665543
No 499
>COG1520 FOG: WD40-like repeat [Function unknown]
Probab=57.20 E-value=1e+02 Score=24.96 Aligned_cols=109 Identities=10% Similarity=0.021 Sum_probs=0.0
Q ss_pred CCeEEEEcCCCcEEEEEcCCCeeeeeeecC---ceeeEEEECCCCCEEEEEeCCCeEEEEecCCceeeeEEeeec-Ccee
Q 026765 120 GTHIAVGNRDDELTILDVRKFKPIHRRKFG---YEVNEIAWNMTGEMFFLTTGNGTVEVLTYPSLRPLDTVVAHT-AGCY 195 (233)
Q Consensus 120 ~~~l~~~~~d~~i~i~d~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~-~~v~ 195 (233)
+..+.++..++.+.-+|..+...+...... ..+..-....+|+ +..++.++.+..+|.++++..-...... ..+.
T Consensus 68 dg~v~~~~~~G~i~A~d~~~g~~~W~~~~~~~~~~~~~~~~~~~G~-i~~g~~~g~~y~ld~~~G~~~W~~~~~~~~~~~ 146 (370)
T COG1520 68 DGTVYVGTRDGNIFALNPDTGLVKWSYPLLGAVAQLSGPILGSDGK-IYVGSWDGKLYALDASTGTLVWSRNVGGSPYYA 146 (370)
T ss_pred CCeEEEecCCCcEEEEeCCCCcEEecccCcCcceeccCceEEeCCe-EEEecccceEEEEECCCCcEEEEEecCCCeEEe
Q ss_pred EEEECCCCCEEEEeeCCCcEEEEecCCcEEEEeee
Q 026765 196 CIAIDPMGRYFAVGSADSLVSLWDISEMLCVRTFT 230 (233)
Q Consensus 196 ~i~~~p~~~~las~s~dg~v~iwd~~~~~~i~~~~ 230 (233)
.-..-.++..+... .++.+.-.|..+++.+=+++
T Consensus 147 ~~~v~~~~~v~~~s-~~g~~~al~~~tG~~~W~~~ 180 (370)
T COG1520 147 SPPVVGDGTVYVGT-DDGHLYALNADTGTLKWTYE 180 (370)
T ss_pred cCcEEcCcEEEEec-CCCeEEEEEccCCcEEEEEe
No 500
>KOG1520 consensus Predicted alkaloid synthase/Surface mucin Hemomucin [General function prediction only]
Probab=57.10 E-value=1.1e+02 Score=25.12 Aligned_cols=49 Identities=12% Similarity=0.171 Sum_probs=26.8
Q ss_pred CCCeEEEEecCCceeeeEEeeecCceeEEEECCCCCEEEEeeC--CCcEEEE
Q 026765 169 GNGTVEVLTYPSLRPLDTVVAHTAGCYCIAIDPMGRYFAVGSA--DSLVSLW 218 (233)
Q Consensus 169 ~~~~v~~~~~~~~~~~~~~~~~~~~v~~i~~~p~~~~las~s~--dg~v~iw 218 (233)
.+|.+.-||..+. ..+.+...-.-.+.++.||++.+++.+=. -+..+.|
T Consensus 197 ~~GRl~~YD~~tK-~~~VLld~L~F~NGlaLS~d~sfvl~~Et~~~ri~ryw 247 (376)
T KOG1520|consen 197 PTGRLFRYDPSTK-VTKVLLDGLYFPNGLALSPDGSFVLVAETTTARIKRYW 247 (376)
T ss_pred CccceEEecCccc-chhhhhhcccccccccCCCCCCEEEEEeeccceeeeeE
Confidence 4566666664432 22222222334578999999998765532 2344555
Done!