Your job contains 1 sequence.
>026766
MSKRKRPDSNAPSDSLTDHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSL
QNKSLIKEVVNIHSKGKKHLMAVEFEPSKEISGGAWYSEGSLDTEFIKVVKSQCLKQIIK
LKVATLEGISDSIKRSGAFKVDLTKQQIEEIVRALVLDNQIMEVKSNGSGEFTNIPVGKV
CYKNVSKGGGGGEPKTGSLASIPCGVCPQINICKPDGVISPKTCVYYTKWLDF
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 026766
(233 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2171671 - symbol:AT5G23710 species:3702 "Arabi... 557 7.0e-54 1
UNIPROTKB|F1MYX7 - symbol:POLR3F "DNA-directed RNA polyme... 299 1.5e-26 1
UNIPROTKB|E2RG78 - symbol:POLR3F "Uncharacterized protein... 298 1.9e-26 1
UNIPROTKB|Q2T9S3 - symbol:POLR3F "DNA-directed RNA polyme... 297 2.5e-26 1
UNIPROTKB|Q9H1D9 - symbol:POLR3F "DNA-directed RNA polyme... 297 2.5e-26 1
UNIPROTKB|J9P638 - symbol:POLR3F "Uncharacterized protein... 296 3.2e-26 1
RGD|1306428 - symbol:Polr3f "polymerase (RNA) III (DNA di... 293 6.6e-26 1
MGI|MGI:1924086 - symbol:Polr3f "polymerase (RNA) III (DN... 292 8.4e-26 1
UNIPROTKB|E1BU41 - symbol:POLR3F "Uncharacterized protein... 291 1.1e-25 1
UNIPROTKB|F1SBH4 - symbol:POLR3F "Uncharacterized protein... 290 1.4e-25 1
ZFIN|ZDB-GENE-040426-972 - symbol:polr3f "polymerase (RNA... 287 2.9e-25 1
DICTYBASE|DDB_G0272022 - symbol:rpc34 "RNA polymerase III... 283 7.6e-25 1
ASPGD|ASPL0000037589 - symbol:AN9125 species:162425 "Emer... 184 8.5e-25 2
FB|FBgn0038951 - symbol:CG5380 species:7227 "Drosophila m... 267 3.8e-23 1
POMBASE|SPCC290.02 - symbol:rpc34 "DNA-directed RNA polym... 221 2.8e-18 1
WB|WBGene00021112 - symbol:W09C3.4 species:6239 "Caenorha... 207 8.6e-17 1
GENEDB_PFALCIPARUM|PF14_0207 - symbol:PF14_0207 "RNA poly... 203 2.4e-16 1
UNIPROTKB|Q8ILN6 - symbol:PF14_0207 "RNA polymerase subun... 203 2.4e-16 1
CGD|CAL0000539 - symbol:orf19.5608 species:5476 "Candida ... 188 2.0e-14 1
SGD|S000005286 - symbol:RPC34 "RNA polymerase III subunit... 166 2.3e-14 2
UNIPROTKB|F1LW73 - symbol:F1LW73 "Uncharacterized protein... 105 1.4e-05 1
>TAIR|locus:2171671 [details] [associations]
symbol:AT5G23710 species:3702 "Arabidopsis thaliana"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003899 "DNA-directed
RNA polymerase activity" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0009507 "chloroplast" evidence=IDA]
InterPro:IPR007832 Pfam:PF05158 PIRSF:PIRSF028763 EMBL:CP002688
GO:GO:0009507 GO:GO:0003677 GO:GO:0006351 EMBL:AB025633
GO:GO:0003899 KO:K03025 InterPro:IPR016049 PANTHER:PTHR12780
EMBL:BT010606 IPI:IPI00518437 RefSeq:NP_197760.1 UniGene:At.30994
ProteinModelPortal:Q9LSZ5 STRING:Q9LSZ5 PRIDE:Q9LSZ5
EnsemblPlants:AT5G23710.1 GeneID:832436 KEGG:ath:AT5G23710
TAIR:At5g23710 InParanoid:Q9LSZ5 OMA:FASTRIG PhylomeDB:Q9LSZ5
ProtClustDB:CLSN2686296 Genevestigator:Q9LSZ5 Uniprot:Q9LSZ5
Length = 230
Score = 557 (201.1 bits), Expect = 7.0e-54, P = 7.0e-54
Identities = 113/236 (47%), Positives = 154/236 (65%)
Query: 1 MSKRKRPDSNAPSDSLTD-HERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKS 59
MSKRKRPD + L + HE+ + D+IR Q G ++KRE + P IVT+ I S
Sbjct: 1 MSKRKRPDPKSSGGDLNEPHEKKLLDLIRINQGRGATMFELKREKTI--PATIVTRLIAS 58
Query: 60 LQNKSLIKEVVNIHSKGKKHLMAVEFEPSKEISGGAWYSEGSLDTEFIKVVKSQCLKQII 119
L+ K+LIKEV N+++KG KH +A+EFEP E++GG WY++G+LD I+ +K++C+ +
Sbjct: 59 LRKKNLIKEVANMNNKGVKHYLAMEFEPCSELTGGEWYTDGALDLSKIEDLKAKCVMILE 118
Query: 120 K--LKVATLEGISDSIKRSGAFKVDLTKQQIEEIVRALVLDNQIMEVKSNGSGEFTNIPV 177
+ +V TLE + + VD TK EI++ L+LDN IMEVKSNG EF + +
Sbjct: 119 RHRQRVVTLEVLCGYFVKEEKLSVDQTK----EILKNLILDNLIMEVKSNGMNEFASTRI 174
Query: 178 GKVCYKNVSKXXXXXEPKTGSLASIPCGVCPQINICKPDGVISPKTCVYYTKWLDF 233
G+VCY+ K EP+ G+ ASIPCGVCP I IC PDGVISP TCVY+ KWLDF
Sbjct: 175 GEVCYRLTGKKFGNGEPRAGAFASIPCGVCPHIAICSPDGVISPTTCVYFQKWLDF 230
>UNIPROTKB|F1MYX7 [details] [associations]
symbol:POLR3F "DNA-directed RNA polymerase III subunit
RPC6" species:9913 "Bos taurus" [GO:0045089 "positive regulation of
innate immune response" evidence=IEA] [GO:0032728 "positive
regulation of interferon-beta production" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0003899
"DNA-directed RNA polymerase activity" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] InterPro:IPR007832 Pfam:PF05158
PIRSF:PIRSF028763 GO:GO:0003677 GO:GO:0006351 GO:GO:0045089
GO:GO:0003899 GO:GO:0032728 IPI:IPI00699294 UniGene:Bt.27185
InterPro:IPR016049 PANTHER:PTHR12780 GeneTree:ENSGT00390000009679
OMA:SITGGAW EMBL:DAAA02035728 EMBL:DAAA02035725 EMBL:DAAA02035726
EMBL:DAAA02035727 Ensembl:ENSBTAT00000011619 Uniprot:F1MYX7
Length = 316
Score = 299 (110.3 bits), Expect = 1.5e-26, P = 1.5e-26
Identities = 77/245 (31%), Positives = 126/245 (51%)
Query: 4 RKRPDSNAPSDSLTDH-ERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQN 62
R + NA +D+ E+L+Y +I + GIW+RD++ + NLP + K +K+L++
Sbjct: 75 RIKDSQNAGKMKGSDNQEKLVYQIIEDAGNKGIWSRDIR--YKSNLPLTEINKILKNLES 132
Query: 63 KSLIKEVVNIHSKGKKHLMAVEFEPSKEISGGAWYSEGSLDTEFIKVVKSQCLKQI-IKL 121
K LIK V ++ + KK M +P + ++GGAWYS+ ++EF++V+ QC K + K
Sbjct: 133 KKLIKAVKSVAASKKKVYMLYNLQPDRSVTGGAWYSDQDFESEFVEVLNQQCFKFLQTKA 192
Query: 122 KVATLEGISDSIKRSGAFKV--DLTKQQIEEIVRALVLDNQIMEVKSN-----GSGEFTN 174
+ A + I+R+ +F ++ K E + + L + +E N G E T
Sbjct: 193 ETARESKQNPMIQRNSSFASSHEVWKYICELGISKVELSMEDIETILNTLIYDGKVEMTI 252
Query: 175 IP-----VGKVC-YKNVSKXXXXXEPKTGSLASIPCGVCPQINICKPDGVISPKTCVYYT 228
I VG V + + + P TG L PCG+CP + C G ISP C+Y T
Sbjct: 253 IAAKEGTVGSVDGHMKLYRAVSPIIPPTG-LVRAPCGLCPVFDDCHEGGEISPSNCIYMT 311
Query: 229 KWLDF 233
+WL+F
Sbjct: 312 EWLEF 316
>UNIPROTKB|E2RG78 [details] [associations]
symbol:POLR3F "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR007832 Pfam:PF05158 PIRSF:PIRSF028763 GO:GO:0003677
GO:GO:0006351 GO:GO:0003899 CTD:10621 KO:K03025 InterPro:IPR016049
PANTHER:PTHR12780 GeneTree:ENSGT00390000009679 EMBL:AAEX03013766
RefSeq:XP_857138.2 Ensembl:ENSCAFT00000008718 GeneID:477143
KEGG:cfa:477143 NextBio:20852675 Uniprot:E2RG78
Length = 316
Score = 298 (110.0 bits), Expect = 1.9e-26, P = 1.9e-26
Identities = 77/245 (31%), Positives = 126/245 (51%)
Query: 4 RKRPDSNAPSDSLTDH-ERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQN 62
R + NA +D+ E+L+Y +I + GIW+RD++ + NLP + K +K+L++
Sbjct: 75 RIKDSQNAGKMKGSDNQEKLVYQIIEDAGNKGIWSRDIR--YKSNLPLTEINKILKNLES 132
Query: 63 KSLIKEVVNIHSKGKKHLMAVEFEPSKEISGGAWYSEGSLDTEFIKVVKSQCLKQI-IKL 121
K LIK V ++ + KK M +P + ++GGAWYS+ ++EF++V+ QC K + K
Sbjct: 133 KKLIKAVKSVAASKKKVYMLYNLQPDRSVTGGAWYSDQDFESEFVEVLNQQCFKFLQTKA 192
Query: 122 KVATLEGISDSIKRSGAFKV--DLTKQQIEEIVRALVLDNQIMEVKSN-----GSGEFTN 174
+ A + I+R+ +F ++ K E + + L + +E N G E T
Sbjct: 193 ETARESKQNPMIQRNSSFASSHEVWKYICELGISKVELSMEDIETILNTLIYDGKVEMTI 252
Query: 175 IP-----VGKVC-YKNVSKXXXXXEPKTGSLASIPCGVCPQINICKPDGVISPKTCVYYT 228
I VG V + + + P TG L PCG+CP + C G ISP C+Y T
Sbjct: 253 IAAKEGTVGSVDGHMKLYRAVNPIIPPTG-LVRAPCGLCPVFDDCHEGGEISPSNCIYMT 311
Query: 229 KWLDF 233
+WL+F
Sbjct: 312 EWLEF 316
>UNIPROTKB|Q2T9S3 [details] [associations]
symbol:POLR3F "DNA-directed RNA polymerase III subunit
RPC6" species:9913 "Bos taurus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0045089 "positive regulation of innate immune
response" evidence=ISS] [GO:0032728 "positive regulation of
interferon-beta production" evidence=ISS] [GO:0005634 "nucleus"
evidence=IEA] [GO:0051607 "defense response to virus" evidence=IEA]
[GO:0045087 "innate immune response" evidence=IEA] [GO:0003899
"DNA-directed RNA polymerase activity" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] InterPro:IPR007832
Pfam:PF05158 PIRSF:PIRSF028763 GO:GO:0005634 GO:GO:0003677
GO:GO:0045087 GO:GO:0006351 GO:GO:0051607 GO:GO:0045089
GO:GO:0003899 GO:GO:0032728 EMBL:BC111292 IPI:IPI00699294
RefSeq:NP_001033237.1 UniGene:Bt.27185 ProteinModelPortal:Q2T9S3
SMR:Q2T9S3 STRING:Q2T9S3 GeneID:529410 KEGG:bta:529410 CTD:10621
eggNOG:COG5111 HOGENOM:HOG000231688 HOVERGEN:HBG006817
InParanoid:Q2T9S3 KO:K03025 OrthoDB:EOG4VQ9PP NextBio:20875029
InterPro:IPR016049 PANTHER:PTHR12780 Uniprot:Q2T9S3
Length = 316
Score = 297 (109.6 bits), Expect = 2.5e-26, P = 2.5e-26
Identities = 77/245 (31%), Positives = 126/245 (51%)
Query: 4 RKRPDSNAPSDSLTDH-ERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQN 62
R + NA +D+ E+L+Y +I + GIW+RD++ + NLP + K +K+L++
Sbjct: 75 RIKDSQNAGKMKGSDNQEKLVYQIIEDAGNKGIWSRDIR--YKSNLPLTEINKILKNLES 132
Query: 63 KSLIKEVVNIHSKGKKHLMAVEFEPSKEISGGAWYSEGSLDTEFIKVVKSQCLKQII-KL 121
K LIK V ++ + KK M +P + ++GGAWYS+ ++EF++V+ QC K + K
Sbjct: 133 KKLIKAVKSVAASKKKVYMLYNLQPDRSVTGGAWYSDQDFESEFVEVLNQQCFKFLQNKA 192
Query: 122 KVATLEGISDSIKRSGAFKV--DLTKQQIEEIVRALVLDNQIMEVKSN-----GSGEFTN 174
+ A + I+R+ +F ++ K E + + L + +E N G E T
Sbjct: 193 ETARESKQNPMIQRNSSFASSHEVWKYICELGISKVELSMEDIETILNTLIYDGKVEMTI 252
Query: 175 IP-----VGKVC-YKNVSKXXXXXEPKTGSLASIPCGVCPQINICKPDGVISPKTCVYYT 228
I VG V + + + P TG L PCG+CP + C G ISP C+Y T
Sbjct: 253 IAAKEGTVGSVDGHMKLYRAVSPIIPPTG-LVRAPCGLCPVFDDCHEGGEISPSNCIYMT 311
Query: 229 KWLDF 233
+WL+F
Sbjct: 312 EWLEF 316
>UNIPROTKB|Q9H1D9 [details] [associations]
symbol:POLR3F "DNA-directed RNA polymerase III subunit
RPC6" species:9606 "Homo sapiens" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0045087 "innate immune response" evidence=IEA]
[GO:0051607 "defense response to virus" evidence=IEA] [GO:0005666
"DNA-directed RNA polymerase III complex" evidence=NAS] [GO:0006359
"regulation of transcription from RNA polymerase III promoter"
evidence=NAS] [GO:0032728 "positive regulation of interferon-beta
production" evidence=IMP] [GO:0045089 "positive regulation of
innate immune response" evidence=IMP] [GO:0003899 "DNA-directed RNA
polymerase activity" evidence=NAS] [GO:0005654 "nucleoplasm"
evidence=TAS] [GO:0006383 "transcription from RNA polymerase III
promoter" evidence=TAS] [GO:0006385 "transcription elongation from
RNA polymerase III promoter" evidence=TAS] [GO:0006386 "termination
of RNA polymerase III transcription" evidence=TAS] [GO:0010467
"gene expression" evidence=TAS] [GO:0005515 "protein binding"
evidence=IPI] Reactome:REACT_71 InterPro:IPR007832 Pfam:PF05158
PIRSF:PIRSF028763 EMBL:U93869 GO:GO:0003677 GO:GO:0045087
GO:GO:0051607 EMBL:CH471133 GO:GO:0045089 Reactome:REACT_1788
GO:GO:0006359 GO:GO:0005666 GO:GO:0003899 GO:GO:0032728
EMBL:AL121893 GO:GO:0006386 GO:GO:0006385 CTD:10621 eggNOG:COG5111
HOGENOM:HOG000231688 HOVERGEN:HBG006817 KO:K03025 OrthoDB:EOG4VQ9PP
InterPro:IPR016049 PANTHER:PTHR12780 OMA:SITGGAW EMBL:AK290892
EMBL:BC012588 IPI:IPI00100245 RefSeq:NP_006457.2 UniGene:Hs.472227
PDB:2DK5 PDB:2YU3 PDBsum:2DK5 PDBsum:2YU3 ProteinModelPortal:Q9H1D9
SMR:Q9H1D9 DIP:DIP-34646N IntAct:Q9H1D9 MINT:MINT-1377146
STRING:Q9H1D9 PhosphoSite:Q9H1D9 DMDM:20139728 PRIDE:Q9H1D9
DNASU:10621 Ensembl:ENST00000377603 GeneID:10621 KEGG:hsa:10621
UCSC:uc002wqv.3 GeneCards:GC20P018457 HGNC:HGNC:15763
neXtProt:NX_Q9H1D9 PharmGKB:PA33520 InParanoid:Q9H1D9
PhylomeDB:Q9H1D9 BindingDB:Q9H1D9 ChEMBL:CHEMBL2143
EvolutionaryTrace:Q9H1D9 GenomeRNAi:10621 NextBio:40356
ArrayExpress:Q9H1D9 Bgee:Q9H1D9 CleanEx:HS_POLR3F
Genevestigator:Q9H1D9 GermOnline:ENSG00000132664 Uniprot:Q9H1D9
Length = 316
Score = 297 (109.6 bits), Expect = 2.5e-26, P = 2.5e-26
Identities = 77/245 (31%), Positives = 126/245 (51%)
Query: 4 RKRPDSNAPSDSLTDH-ERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQN 62
R + NA +D+ E+L+Y +I + GIW+RD++ + NLP + K +K+L++
Sbjct: 75 RIKDSQNAGKMKGSDNQEKLVYQIIEDAGNKGIWSRDIR--YKSNLPLTEINKILKNLES 132
Query: 63 KSLIKEVVNIHSKGKKHLMAVEFEPSKEISGGAWYSEGSLDTEFIKVVKSQCLKQI-IKL 121
K LIK V ++ + KK M +P + ++GGAWYS+ ++EF++V+ QC K + K
Sbjct: 133 KKLIKAVKSVAASKKKVYMLYNLQPDRSVTGGAWYSDQDFESEFVEVLNQQCFKFLQSKA 192
Query: 122 KVATLEGISDSIKRSGAFKV--DLTKQQIEEIVRALVLDNQIMEVKSN-----GSGEFTN 174
+ A + I+R+ +F ++ K E + + L + +E N G E T
Sbjct: 193 ETARESKQNPMIQRNSSFASSHEVWKYICELGISKVELSMEDIETILNTLIYDGKVEMTI 252
Query: 175 IP-----VGKVC-YKNVSKXXXXXEPKTGSLASIPCGVCPQINICKPDGVISPKTCVYYT 228
I VG V + + + P TG L PCG+CP + C G ISP C+Y T
Sbjct: 253 IAAKEGTVGSVDGHMKLYRAVNPIIPPTG-LVRAPCGLCPVFDDCHEGGEISPSNCIYMT 311
Query: 229 KWLDF 233
+WL+F
Sbjct: 312 EWLEF 316
>UNIPROTKB|J9P638 [details] [associations]
symbol:POLR3F "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR007832 Pfam:PF05158 PIRSF:PIRSF028763 GO:GO:0003677
GO:GO:0006351 GO:GO:0003899 InterPro:IPR016049 PANTHER:PTHR12780
GeneTree:ENSGT00390000009679 OMA:SITGGAW EMBL:AAEX03013766
Ensembl:ENSCAFT00000043193 Uniprot:J9P638
Length = 323
Score = 296 (109.3 bits), Expect = 3.2e-26, P = 3.2e-26
Identities = 73/230 (31%), Positives = 120/230 (52%)
Query: 18 DHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVVNIHSKGK 77
+ E+L+Y +I + GIW+RD++ + NLP + K +K+L++K LIK V ++ + K
Sbjct: 97 NQEKLVYQIIEDAGNKGIWSRDIR--YKSNLPLTEINKILKNLESKKLIKAVKSVAASKK 154
Query: 78 KHLMAVEFEPSKEISGGAWYSEGSLDTEFIKVVKSQCLKQI-IKLKVATLEGISDSIKRS 136
K M +P + ++GGAWYS+ ++EF++V+ QC K + K + A + I+R+
Sbjct: 155 KVYMLYNLQPDRSVTGGAWYSDQDFESEFVEVLNQQCFKFLQTKAETARESKQNPMIQRN 214
Query: 137 GAFKV--DLTKQQIEEIVRALVLDNQIMEVKSN-----GSGEFTNIP-----VGKVC-YK 183
+F ++ K E + + L + +E N G E T I VG V +
Sbjct: 215 SSFASSHEVWKYICELGISKVELSMEDIETILNTLIYDGKVEMTIIAAKEGTVGSVDGHM 274
Query: 184 NVSKXXXXXEPKTGSLASIPCGVCPQINICKPDGVISPKTCVYYTKWLDF 233
+ + P TG L PCG+CP + C G ISP C+Y T+WL+F
Sbjct: 275 KLYRAVNPIIPPTG-LVRAPCGLCPVFDDCHEGGEISPSNCIYMTEWLEF 323
>RGD|1306428 [details] [associations]
symbol:Polr3f "polymerase (RNA) III (DNA directed) polypeptide
F" species:10116 "Rattus norvegicus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0032728 "positive regulation of interferon-beta
production" evidence=ISO] [GO:0045089 "positive regulation of
innate immune response" evidence=ISO] InterPro:IPR007832
Pfam:PF05158 PIRSF:PIRSF028763 RGD:1306428 GO:GO:0003677
GO:GO:0006351 GO:GO:0003899 EMBL:CH474026 CTD:10621 KO:K03025
OrthoDB:EOG4VQ9PP InterPro:IPR016049 PANTHER:PTHR12780
GeneTree:ENSGT00390000009679 IPI:IPI00195213 RefSeq:NP_001101254.1
UniGene:Rn.22329 Ensembl:ENSRNOT00000010468 GeneID:311487
KEGG:rno:311487 UCSC:RGD:1306428 NextBio:663707 Uniprot:D3ZQ56
Length = 371
Score = 293 (108.2 bits), Expect = 6.6e-26, P = 6.6e-26
Identities = 76/245 (31%), Positives = 126/245 (51%)
Query: 4 RKRPDSNAPSDSLTDH-ERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQN 62
R + NA +D+ E+L+Y +I + GIW+RD++ + NLP + K +K+L++
Sbjct: 130 RIKDSQNAGKMKGSDNQEKLVYQIIEDAGNKGIWSRDIR--YKSNLPLTEINKILKNLES 187
Query: 63 KSLIKEVVNIHSKGKKHLMAVEFEPSKEISGGAWYSEGSLDTEFIKVVKSQCLKQI-IKL 121
K LIK V ++ + KK M +P + ++GGAWYS+ ++EF++V+ QC K + K
Sbjct: 188 KKLIKAVKSVAASKKKVYMLYNLQPDRSVTGGAWYSDQDFESEFVEVLNQQCFKFLQSKA 247
Query: 122 KVATLEGISDSIKRSGAFKV--DLTKQQIEEIVRALVLDNQIMEVKSN-----GSGEFTN 174
+ A + I+R+ +F ++ K E + + L + +E N G + T
Sbjct: 248 ETARESKQNPVIQRNSSFASSHEVWKYICELGISKVELSMEDIETILNTLIYDGKVDMTI 307
Query: 175 IP-----VGKVC-YKNVSKXXXXXEPKTGSLASIPCGVCPQINICKPDGVISPKTCVYYT 228
I VG V + + + P TG L PCG+CP + C G ISP C+Y T
Sbjct: 308 IAAKEGTVGSVDGHMKLYRAVNPILPPTG-LVRAPCGLCPVFDDCHEGGEISPSNCIYMT 366
Query: 229 KWLDF 233
+WL+F
Sbjct: 367 EWLEF 371
>MGI|MGI:1924086 [details] [associations]
symbol:Polr3f "polymerase (RNA) III (DNA directed)
polypeptide F" species:10090 "Mus musculus" [GO:0003677 "DNA
binding" evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase
activity" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0032728 "positive regulation of interferon-beta production"
evidence=ISO] [GO:0045087 "innate immune response" evidence=IEA]
[GO:0045089 "positive regulation of innate immune response"
evidence=ISO] [GO:0051607 "defense response to virus" evidence=IEA]
InterPro:IPR007832 Pfam:PF05158 PIRSF:PIRSF028763 MGI:MGI:1924086
GO:GO:0005634 GO:GO:0003677 GO:GO:0045087 GO:GO:0006351
GO:GO:0051607 GO:GO:0045089 GO:GO:0003899 GO:GO:0032728 CTD:10621
eggNOG:COG5111 HOGENOM:HOG000231688 HOVERGEN:HBG006817 KO:K03025
OrthoDB:EOG4VQ9PP InterPro:IPR016049 PANTHER:PTHR12780
GeneTree:ENSGT00390000009679 OMA:SITGGAW EMBL:AK036166
EMBL:AK076538 EMBL:AK144679 EMBL:BC009159 IPI:IPI00122358
RefSeq:NP_084039.2 UniGene:Mm.389351 PDB:2DK8 PDBsum:2DK8
ProteinModelPortal:Q921X6 SMR:Q921X6 STRING:Q921X6
PhosphoSite:Q921X6 PRIDE:Q921X6 Ensembl:ENSMUST00000028914
GeneID:70408 KEGG:mmu:70408 InParanoid:Q921X6
EvolutionaryTrace:Q921X6 NextBio:331553 Bgee:Q921X6
CleanEx:MM_POLR3F Genevestigator:Q921X6
GermOnline:ENSMUSG00000027427 Uniprot:Q921X6
Length = 316
Score = 292 (107.8 bits), Expect = 8.4e-26, P = 8.4e-26
Identities = 76/245 (31%), Positives = 126/245 (51%)
Query: 4 RKRPDSNAPSDSLTDH-ERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQN 62
R + NA +D+ E+L+Y +I + GIW+RD++ + NLP + K +K+L++
Sbjct: 75 RIKDSQNAGKMKGSDNQEKLVYQIIEDAGNKGIWSRDIR--YKSNLPLTEINKILKNLES 132
Query: 63 KSLIKEVVNIHSKGKKHLMAVEFEPSKEISGGAWYSEGSLDTEFIKVVKSQCLKQI-IKL 121
K LIK V ++ + KK M +P + ++GGAWYS+ ++EF++V+ QC K + K
Sbjct: 133 KKLIKAVKSVAASKKKVYMLYNLQPDRSVTGGAWYSDQDFESEFVEVLNQQCFKFLQSKA 192
Query: 122 KVATLEGISDSIKRSGAFKV--DLTKQQIEEIVRALVLDNQIMEVKSN-----GSGEFTN 174
+ A + I+R+ +F ++ K E + + L + +E N G E T
Sbjct: 193 ETARESKQNPVIQRNSSFASSHEVWKYICELGISKVELSMEDIETILNTLIYDGKVEMTI 252
Query: 175 IP-----VGKVC-YKNVSKXXXXXEPKTGSLASIPCGVCPQINICKPDGVISPKTCVYYT 228
I VG V + + + P TG + + PCG+CP C G ISP C+Y T
Sbjct: 253 IAAKEGTVGSVDGHMKLYRAVNPILPPTGVVRA-PCGLCPVFEDCHEGGEISPSNCIYMT 311
Query: 229 KWLDF 233
+WL+F
Sbjct: 312 EWLEF 316
>UNIPROTKB|E1BU41 [details] [associations]
symbol:POLR3F "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0003899
"DNA-directed RNA polymerase activity" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0032728 "positive
regulation of interferon-beta production" evidence=IEA] [GO:0045089
"positive regulation of innate immune response" evidence=IEA]
InterPro:IPR007832 Pfam:PF05158 PIRSF:PIRSF028763 GO:GO:0003677
GO:GO:0006351 GO:GO:0045089 GO:GO:0003899 GO:GO:0032728 CTD:10621
KO:K03025 InterPro:IPR016049 PANTHER:PTHR12780
GeneTree:ENSGT00390000009679 OMA:SITGGAW EMBL:AADN02041178
IPI:IPI00578749 RefSeq:NP_001186330.1 UniGene:Gga.5581
Ensembl:ENSGALT00000014238 GeneID:416723 KEGG:gga:416723
NextBio:20820145 Uniprot:E1BU41
Length = 314
Score = 291 (107.5 bits), Expect = 1.1e-25, P = 1.1e-25
Identities = 76/245 (31%), Positives = 124/245 (50%)
Query: 4 RKRPDSNAPSDSLTDH-ERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQN 62
R + NA +D+ E+L+Y +I + GIW+RD++ + NLP + K +K+L++
Sbjct: 73 RIKESQNASKMKGSDNQEKLVYQIIEDAGNKGIWSRDIR--YKSNLPLTEINKILKNLES 130
Query: 63 KSLIKEVVNIHSKGKKHLMAVEFEPSKEISGGAWYSEGSLDTEFIKVVKSQCLKQI-IKL 121
K LIK V ++ + KK M +P + ++GGAWYS+ ++EF++V+ QC K + K
Sbjct: 131 KKLIKAVKSVAASKKKVYMLYNLQPDRSVTGGAWYSDQDFESEFVEVLNQQCFKFLQSKA 190
Query: 122 KVATLEGISDSIKRSGAFKV--DLTKQQIEEIVRALVLDNQIMEVKSN-----GSGEFTN 174
+ A + I+R+ +F ++ K E + + L + +E N G E T
Sbjct: 191 EAARESKQNPMIQRNSSFASSHEVWKYICELGISKVELSMEDIETILNTLIYDGKVEMTI 250
Query: 175 IPVGKVCYKNVS---KXXXXXEP---KTGSLASIPCGVCPQINICKPDGVISPKTCVYYT 228
I + +V K P TG L PCG+CP + C G ISP C+Y T
Sbjct: 251 IAAKEGTVGSVDGQMKLYRAVSPLIQPTG-LVRTPCGLCPVFDDCHEGGEISPSNCIYMT 309
Query: 229 KWLDF 233
+WL+F
Sbjct: 310 EWLEF 314
>UNIPROTKB|F1SBH4 [details] [associations]
symbol:POLR3F "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0045089 "positive regulation of innate immune response"
evidence=IEA] [GO:0032728 "positive regulation of interferon-beta
production" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0003899 "DNA-directed RNA
polymerase activity" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR007832 Pfam:PF05158 PIRSF:PIRSF028763
GO:GO:0003677 GO:GO:0006351 GO:GO:0045089 GO:GO:0003899
GO:GO:0032728 CTD:10621 KO:K03025 InterPro:IPR016049
PANTHER:PTHR12780 GeneTree:ENSGT00390000009679 OMA:SITGGAW
EMBL:CU914246 RefSeq:XP_003483946.1 Ensembl:ENSSSCT00000007767
GeneID:100738796 KEGG:ssc:100738796 Uniprot:F1SBH4
Length = 316
Score = 290 (107.1 bits), Expect = 1.4e-25, P = 1.4e-25
Identities = 76/245 (31%), Positives = 124/245 (50%)
Query: 4 RKRPDSNAPSDSLTDH-ERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQN 62
R + NA +D+ E+L+Y +I + GIW+RD++ + NLP + K +K+L++
Sbjct: 75 RIKDSQNAGKMKGSDNQEKLVYQIIEDAGNKGIWSRDIR--YKSNLPLTEINKILKNLES 132
Query: 63 KSLIKEVVNIHSKGKKHLMAVEFEPSKEISGGAWYSEGSLDTEFIKVVKSQCLKQI-IKL 121
K LIK V ++ + KK M +P + ++GGAWYS+ ++EF++V+ QC K + K
Sbjct: 133 KKLIKAVKSVAASKKKVYMLYNLQPDRSVTGGAWYSDQDFESEFVEVLNQQCFKFLQTKA 192
Query: 122 KVATLEGISDSIKRSGAFKV--DLTKQQIEEIVRALVLDNQIMEVKSN-----GSGEFTN 174
+ A + I+R+ +F ++ K E + + L + +E N G E T
Sbjct: 193 ETARESKQNPVIQRNSSFASSHEVWKYICELGISKVELSMEDIETILNTLIYDGKVEMTI 252
Query: 175 IPVGKVCYKNVS---KXXXXXEP---KTGSLASIPCGVCPQINICKPDGVISPKTCVYYT 228
I + +V K P TG L PCG+CP + C G ISP C+Y T
Sbjct: 253 IAAKEGTVGSVDGHMKLYRAVNPIISPTG-LVRAPCGLCPVFDDCHEGGEISPSNCIYMT 311
Query: 229 KWLDF 233
+WL+F
Sbjct: 312 EWLEF 316
>ZFIN|ZDB-GENE-040426-972 [details] [associations]
symbol:polr3f "polymerase (RNA) III (DNA directed)
polypeptide F" species:7955 "Danio rerio" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0060041 "retina development in camera-type eye"
evidence=IMP] InterPro:IPR007832 Pfam:PF05158 PIRSF:PIRSF028763
ZFIN:ZDB-GENE-040426-972 GO:GO:0003677 GO:GO:0006351 GO:GO:0060041
GO:GO:0003899 CTD:10621 HOVERGEN:HBG006817 KO:K03025
InterPro:IPR016049 PANTHER:PTHR12780 EMBL:BC051782 IPI:IPI00483706
RefSeq:NP_957481.1 UniGene:Dr.24983 ProteinModelPortal:Q7ZTZ0
SMR:Q7ZTZ0 STRING:Q7ZTZ0 GeneID:394162 KEGG:dre:394162
InParanoid:Q7ZTZ0 NextBio:20815110 ArrayExpress:Q7ZTZ0
Uniprot:Q7ZTZ0
Length = 314
Score = 287 (106.1 bits), Expect = 2.9e-25, P = 2.9e-25
Identities = 72/231 (31%), Positives = 116/231 (50%)
Query: 18 DHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVVNIHSKGK 77
+ E+L+Y +I + GIW+RD++ + NLP + K +K+L++K LIK V ++ + K
Sbjct: 88 NQEKLVYQIIEDAGNKGIWSRDIR--YKSNLPLTEINKILKNLESKKLIKAVKSVAASKK 145
Query: 78 KHLMAVEFEPSKEISGGAWYSEGSLDTEFIKVVKSQCLKQIIKLKVATLEGISDS--IKR 135
K M +P + ++GGAWYS+ ++EF++ + QC K ++ K T S ++R
Sbjct: 146 KVYMLYNLQPDRSVTGGAWYSDQDFESEFVEALNQQCFK-FLQSKAETARDSKQSPMVQR 204
Query: 136 SGAFKV--DLTKQQIEEIVRALVLDNQIMEVKSN-----GSGEFTNIPVGKVCYKNVS-- 186
+ +F ++ K E + + L + +E N G E T I + +V
Sbjct: 205 NSSFATSHEVWKYICELGISKVDLSMEDIETILNTLIFDGKVEMTIIAAKEGTVGSVDGQ 264
Query: 187 -KXXXXXEP---KTGSLASIPCGVCPQINICKPDGVISPKTCVYYTKWLDF 233
K P TG L PCG+CP + C G ISP CVY +WLDF
Sbjct: 265 MKLYRGVNPIIQPTG-LVKTPCGLCPVFDDCHEGGEISPSNCVYMAEWLDF 314
>DICTYBASE|DDB_G0272022 [details] [associations]
symbol:rpc34 "RNA polymerase III subunit"
species:44689 "Dictyostelium discoideum" [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0003899
"DNA-directed RNA polymerase activity" evidence=IEA;ISS]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0006383 "transcription
from RNA polymerase III promoter" evidence=ISS] [GO:0005666
"DNA-directed RNA polymerase III complex" evidence=ISS] [GO:0005634
"nucleus" evidence=IEA] [GO:0044351 "macropinocytosis"
evidence=RCA] InterPro:IPR007832 Pfam:PF05158 PIRSF:PIRSF028763
dictyBase:DDB_G0272022 GO:GO:0003677 GenomeReviews:CM000151_GR
EMBL:AAFI02000007 GO:GO:0006383 GO:GO:0005666 GO:GO:0003899
eggNOG:COG5111 KO:K03025 InterPro:IPR016049 PANTHER:PTHR12780
OMA:SITGGAW RefSeq:XP_645385.1 ProteinModelPortal:Q86JM3
STRING:Q86JM3 PRIDE:Q86JM3 EnsemblProtists:DDB0216315
GeneID:8618274 KEGG:ddi:DDB_G0272022 ProtClustDB:CLSZ2729252
Uniprot:Q86JM3
Length = 293
Score = 283 (104.7 bits), Expect = 7.6e-25, P = 7.6e-25
Identities = 71/233 (30%), Positives = 117/233 (50%)
Query: 3 KRKRPDSNAPSDSLTDHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQN 62
K P+ A L + LIY +I + + G WTR++K +TK +K+L++
Sbjct: 62 KEVNPEDQAKFRGLGVEDFLIYQLIEASSNTGAWTRELKNSSGYQQVQ--ITKILKTLES 119
Query: 63 KSLIKEVVNIHSKGKKHLMAVEFEPSKEISGGAWYSEGSLDTEFIKVVKSQCLKQIIKLK 122
+ LIK V +I S KK M EPS+EI+GG YS+ S D ++I+++K +K + K
Sbjct: 120 RKLIKSVKSIQSGRKKVYMLYNMEPSREITGGQLYSDQSYDHQYIQIMKMH-IKTFVDNK 178
Query: 123 VAT-LEGISDSIKRSG--AFKVDLTKQQIEEIVRALVLDNQIMEVKSNGSGEFTNIPVGK 179
A L I +++ A L + I+ +V ++ D I E++ G G
Sbjct: 179 GAVDLADIITYLRKVAEEATSQSLGPEDIQALVNTVIYDGDIEEMRDTRMGAMLGRRSG- 237
Query: 180 VCYKNVSKXXXXXEPKTGSLASIPCGVCPQINICKPDGVISPKTCVYYTKWLD 232
+ YK P + ++PCG CP +IC +G++SPK CVY+ ++L+
Sbjct: 238 ILYKPTKTPI----P-VNNFCNMPCGNCPVFDICSDNGLVSPKRCVYFKQYLE 285
>ASPGD|ASPL0000037589 [details] [associations]
symbol:AN9125 species:162425 "Emericella nidulans"
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003899 "DNA-directed
RNA polymerase activity" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
InterPro:IPR007832 Pfam:PF05158 PIRSF:PIRSF028763 GO:GO:0003677
EMBL:BN001306 GO:GO:0006351 GO:GO:0003899 EMBL:AACD01000169
eggNOG:COG5111 KO:K03025 InterPro:IPR016049 PANTHER:PTHR12780
HOGENOM:HOG000186563 OrthoDB:EOG4WQ4BZ RefSeq:XP_682394.1
ProteinModelPortal:Q5ARF5 STRING:Q5ARF5
EnsemblFungi:CADANIAT00009485 GeneID:2868020 KEGG:ani:AN9125.2
OMA:IDECSPE Uniprot:Q5ARF5
Length = 359
Score = 184 (69.8 bits), Expect = 8.5e-25, Sum P(2) = 8.5e-25
Identities = 38/96 (39%), Positives = 59/96 (61%)
Query: 15 SLTDHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVVNIHS 74
+L+ E L+Y+VI S GIW R ++ R NL +I+ + +KSL+ K+ IK V N+
Sbjct: 89 NLSPDESLVYNVIHSTGRSGIWVRAIQN--RTNLHKSILDRCLKSLEGKNYIKSVHNVKF 146
Query: 75 KGKKHLMAVEFEPSKEISGGAWYSEGSLDTEFIKVV 110
+K M PS++++GGAW+++G LD FI VV
Sbjct: 147 PSRKMYMLAGLAPSEDVTGGAWFTDGVLDENFIGVV 182
Score = 123 (48.4 bits), Expect = 8.5e-25, Sum P(2) = 8.5e-25
Identities = 26/112 (23%), Positives = 54/112 (48%)
Query: 125 TLEGISDSIKRSGAFKVDLTKQQIEEIVRALVLDNQIMEVKSNGS--GEFTNIPVGKVCY 182
T+ ++ ++ +SG V L ++ + +++ L DN+++ + +NG N K
Sbjct: 241 TIAMLTAAVNQSGITPVRLGEESVTQLLEMLCYDNKLVAL-NNGEYYKSLKNPEEVKARQ 299
Query: 183 -KNVSKXXXXXEPKT--GSLASIPCGVCPQINICKPDGVISPKTCVYYTKWL 231
+ + + + + +PCG CP N+C P G +SP+ C Y+ W+
Sbjct: 300 ARKPDEELAAADDRLVRNGMTEVPCGNCPVFNLCVPGGAVSPENCEYFETWI 351
>FB|FBgn0038951 [details] [associations]
symbol:CG5380 species:7227 "Drosophila melanogaster"
[GO:0003899 "DNA-directed RNA polymerase activity"
evidence=ISS;NAS] [GO:0005666 "DNA-directed RNA polymerase III
complex" evidence=ISS] [GO:0006383 "transcription from RNA
polymerase III promoter" evidence=NAS] [GO:0005634 "nucleus"
evidence=NAS] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0022008
"neurogenesis" evidence=IMP] InterPro:IPR007832 Pfam:PF05158
PIRSF:PIRSF028763 EMBL:AE014297 GO:GO:0005634 GO:GO:0022008
GO:GO:0003677 GO:GO:0006351 GO:GO:0003899 eggNOG:COG5111 KO:K03025
InterPro:IPR016049 PANTHER:PTHR12780 GeneTree:ENSGT00390000009679
OMA:SITGGAW EMBL:AY119241 RefSeq:NP_001247237.1 RefSeq:NP_651029.1
UniGene:Dm.13730 UniGene:Dm.38066 ProteinModelPortal:Q9VD25
SMR:Q9VD25 DIP:DIP-17810N IntAct:Q9VD25 MINT:MINT-299125
STRING:Q9VD25 PRIDE:Q9VD25 EnsemblMetazoa:FBtr0084236
EnsemblMetazoa:FBtr0305320 GeneID:42619 KEGG:dme:Dmel_CG5380
UCSC:CG5380-RA FlyBase:FBgn0038951 InParanoid:Q9VD25
OrthoDB:EOG4W3R3R PhylomeDB:Q9VD25 GenomeRNAi:42619 NextBio:829724
Bgee:Q9VD25 GermOnline:CG5380 Uniprot:Q9VD25
Length = 293
Score = 267 (99.0 bits), Expect = 3.8e-23, P = 3.8e-23
Identities = 68/241 (28%), Positives = 121/241 (50%)
Query: 3 KRKRPDSNA--PSDSLTDHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSL 60
+ K P+ + P D+ + E+++Y ++ + GIW RD++ + +N+ + K +K+L
Sbjct: 62 RAKDPEKKSALPKDA-DNEEKVVYGIVEEGGNKGIWIRDIRMKSNLNMIQ--LNKILKNL 118
Query: 61 QNKSLIKEVVNIHSKGKKHLMAVEFEPSKEISGGAWYSEGSLDTEFIKVVKSQCLKQIIK 120
+ K LIK V ++++ KK M EP I+GGAWY + + EF+ V+ QCL+ ++
Sbjct: 119 ETKKLIKAVKSVNASKKKVYMLYNLEPDLSITGGAWYQDQDFEVEFVDVLNQQCLR-FLQ 177
Query: 121 LKVATLEGISD---SIKRSGAFKVDLTKQQIEEIVRALV------LDNQIMEVKSNGSGE 171
+K + E + + K+ V+ ++ I ++ + V L+ + V +G+ E
Sbjct: 178 MKRDSAEKKREGPLAFKQMSCCTVNEVQKFISDLGISKVNLAEADLETILKTVVYDGNAE 237
Query: 172 FTNIPVGKVCYKNVSKXXXXXEPKTGSLASIPCGVCPQINICKPDGVISPKTCVYYTKWL 231
G Y+ V+ P TG L +PCG+CP I C G ++ TC Y WL
Sbjct: 238 RVRQQDGSFVYRAVNAPL----PPTG-LVQMPCGICPVIKNCSNCGDVTAITCEYMRDWL 292
Query: 232 D 232
D
Sbjct: 293 D 293
>POMBASE|SPCC290.02 [details] [associations]
symbol:rpc34 "DNA-directed RNA polymerase III complex
subunit Rpc34 (predicted)" species:4896 "Schizosaccharomyces pombe"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003899 "DNA-directed
RNA polymerase activity" evidence=ISO] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005666 "DNA-directed RNA polymerase III complex"
evidence=ISO] [GO:0005829 "cytosol" evidence=IDA] [GO:0006383
"transcription from RNA polymerase III promoter" evidence=ISO]
InterPro:IPR007832 Pfam:PF05158 PIRSF:PIRSF028763
PomBase:SPCC290.02 GO:GO:0005829 EMBL:CU329672
GenomeReviews:CU329672_GR GO:GO:0003677 GO:GO:0006383 GO:GO:0005666
GO:GO:0003899 eggNOG:COG5111 KO:K03025 InterPro:IPR016049
PANTHER:PTHR12780 OMA:SITGGAW EMBL:DQ156223 PIR:T41266
RefSeq:NP_588398.1 ProteinModelPortal:O94553 STRING:O94553
EnsemblFungi:SPCC290.02.1 GeneID:2538992 KEGG:spo:SPCC290.02
HOGENOM:HOG000186563 OrthoDB:EOG4WQ4BZ NextBio:20800167
Uniprot:O94553
Length = 301
Score = 221 (82.9 bits), Expect = 2.8e-18, P = 2.8e-18
Identities = 64/247 (25%), Positives = 120/247 (48%)
Query: 6 RPDSNAPSDSLTDHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSL 65
R D ++ E+++Y I++ + GIW + + LR NL ++V + +KSL++K+L
Sbjct: 73 RLDEAKTVSTMEGDEQIVYSFIKNSGNEGIWRKTLT--LRTNLHVSVVDRCLKSLESKNL 130
Query: 66 IKEVVNIHSKGKKHLMAVEFEPSKEISGGAWYSEGSLDTEFIKVVKSQCLKQI----IKL 121
+K + ++ + +K M + PS E++GG W+++ LD EFI+ +K + +
Sbjct: 131 VKSIKSVKNPTRKIYMLYDLVPSTELTGGPWFTDQELDVEFIENLKKVIYRYVHSKSFPP 190
Query: 122 KVATL----------EG------ISDSIKRSGAFKVDLTKQQIEEIVRALVLDNQIMEVK 165
K A + G I + ++ + KVDL+ + +V L+ D ++ E +
Sbjct: 191 KKAAMGPDLVWGPEYNGYPTALQIHNWLRSTNITKVDLSLANVISLVDVLIYDGKV-EKR 249
Query: 166 SNGSGEFTNIPVGKVCYKNVSKXXXXXEPKTGSLASIPCGVCPQINICKPDGVISPKTCV 225
S+G+ + I V +N+ + PCG CP +IC + ++P TC
Sbjct: 250 SDGAS-YRAIRVNN---ENID-----------AFTESPCGNCPVSDICDANSRVNPITCE 294
Query: 226 YYTKWLD 232
Y KWL+
Sbjct: 295 YLDKWLN 301
>WB|WBGene00021112 [details] [associations]
symbol:W09C3.4 species:6239 "Caenorhabditis elegans"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003899 "DNA-directed
RNA polymerase activity" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0000003 "reproduction"
evidence=IMP] InterPro:IPR007832 Pfam:PF05158 PIRSF:PIRSF028763
GO:GO:0005634 GO:GO:0003677 GO:GO:0000003 GO:GO:0006351
GO:GO:0003899 eggNOG:COG5111 HOGENOM:HOG000231688 KO:K03025
InterPro:IPR016049 PANTHER:PTHR12780 EMBL:FO080504 PIR:T34460
RefSeq:NP_491427.1 ProteinModelPortal:P91529 SMR:P91529
STRING:P91529 PaxDb:P91529 EnsemblMetazoa:W09C3.4 GeneID:172081
KEGG:cel:CELE_W09C3.4 UCSC:W09C3.4 CTD:172081 WormBase:W09C3.4
GeneTree:ENSGT00390000009679 InParanoid:P91529 OMA:SITGGAW
NextBio:873937 Uniprot:P91529
Length = 296
Score = 207 (77.9 bits), Expect = 8.6e-17, P = 8.6e-17
Identities = 53/219 (24%), Positives = 106/219 (48%)
Query: 17 TDHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVVNIHSKG 76
T+ E++IY +I + GIW ++++ +N + K++KSL+ K LIK + + +
Sbjct: 82 TEEEQVIYSLIEESKTRGIWIKELREGSGLNQLQ--LRKTLKSLETKKLIKTIKAVGTTR 139
Query: 77 KKHLMAVEFEPSKEISGGAWYSEGSLDTEFIKVVKSQCLKQIIKLKVATLEGISDSIK-- 134
K +++ EP ++GG +YS+ LD+E I + S C + ++ ++I+
Sbjct: 140 KCYIL-FSIEPDMSLTGGTFYSDQQLDSELINTLISVCGSYAASRRKHAIDENPNNIQMQ 198
Query: 135 RSGAFKVDLTKQQIEEIVRALVLDNQIMEVKSNGSGEFTNIPVGKVCYKNVSKXXXXXEP 194
R ++ + Q+I + + + N + ++ + G + + P
Sbjct: 199 REASY---IRPQEIAQFITEKRVLNVPLSLEDLERILEVAVLDGTI-ERRADGKIRACPP 254
Query: 195 KTG--SLASIPCGVCPQINICKPDGVISPKTCVYYTKWL 231
++ L S+PC +CP + C+P VISP++C Y WL
Sbjct: 255 RSSISPLVSVPCAICPVVEDCRPGYVISPQSCDYMKNWL 293
>GENEDB_PFALCIPARUM|PF14_0207 [details] [associations]
symbol:PF14_0207 "RNA polymerase subunit,
putative" species:5833 "Plasmodium falciparum" [GO:0006355
"regulation of transcription, DNA-dependent" evidence=ISS]
InterPro:IPR007832 Pfam:PF05158 PIRSF:PIRSF028763 GO:GO:0006355
GO:GO:0003677 GO:GO:0006351 EMBL:AE014187 GO:GO:0003899 KO:K03025
InterPro:IPR016049 PANTHER:PTHR12780 RefSeq:XP_001348381.2
ProteinModelPortal:Q8ILN6 PRIDE:Q8ILN6
EnsemblProtists:PF14_0207:mRNA GeneID:811789 KEGG:pfa:PF14_0207
EuPathDB:PlasmoDB:PF3D7_1421400 HOGENOM:HOG000281293
ProtClustDB:CLSZ2432693 Uniprot:Q8ILN6
Length = 311
Score = 203 (76.5 bits), Expect = 2.4e-16, P = 2.4e-16
Identities = 55/220 (25%), Positives = 107/220 (48%)
Query: 16 LTDHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVVNIHSK 75
L+D + LI+ + + Q+ GIWT D++++ ++ + V K +K L LIK+V NIH K
Sbjct: 83 LSDIDFLIFTKVENSQNNGIWTADLRKQTKLLIHQ--VQKGVKLLCENKLIKQVNNIHVK 140
Query: 76 GKKHLMAVEFEPSKEISGGAWYSEGSLDTEFIKVVKSQCLKQIIKLKVATLEGISDSIKR 135
+K + + E S+++ GG++Y++G + + + ++ + +++ + + IK+
Sbjct: 141 NRKMYILYDLEASEKVIGGSFYTDGEFNKKVVDYIRENICFYLYNNNNSSVPSVINYIKK 200
Query: 136 SGAFKVD-LTKQQIEEIVRALVLDNQIMEVKSNGSGEFTNIPVGKVCYKNVSKXXXXXEP 194
VD ++ I +++ L + +I KSN E + Y N
Sbjct: 201 LNN-SVDYFSENDIYRVIKTLSYEERINIYKSNNDEEL-------IYYYN--------NE 244
Query: 195 KTGSLASIPCGVCPQINICKPD--GVISPKTCVYYTKWLD 232
K L + PC C N C D I+P++C+Y +L+
Sbjct: 245 KKNFLYNFPCFSCNLFNKCNSDINTTINPRSCMYLNFYLN 284
>UNIPROTKB|Q8ILN6 [details] [associations]
symbol:PF14_0207 "RNA polymerase subunit, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0006355 "regulation
of transcription, DNA-dependent" evidence=ISS] InterPro:IPR007832
Pfam:PF05158 PIRSF:PIRSF028763 GO:GO:0006355 GO:GO:0003677
GO:GO:0006351 EMBL:AE014187 GO:GO:0003899 KO:K03025
InterPro:IPR016049 PANTHER:PTHR12780 RefSeq:XP_001348381.2
ProteinModelPortal:Q8ILN6 PRIDE:Q8ILN6
EnsemblProtists:PF14_0207:mRNA GeneID:811789 KEGG:pfa:PF14_0207
EuPathDB:PlasmoDB:PF3D7_1421400 HOGENOM:HOG000281293
ProtClustDB:CLSZ2432693 Uniprot:Q8ILN6
Length = 311
Score = 203 (76.5 bits), Expect = 2.4e-16, P = 2.4e-16
Identities = 55/220 (25%), Positives = 107/220 (48%)
Query: 16 LTDHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVVNIHSK 75
L+D + LI+ + + Q+ GIWT D++++ ++ + V K +K L LIK+V NIH K
Sbjct: 83 LSDIDFLIFTKVENSQNNGIWTADLRKQTKLLIHQ--VQKGVKLLCENKLIKQVNNIHVK 140
Query: 76 GKKHLMAVEFEPSKEISGGAWYSEGSLDTEFIKVVKSQCLKQIIKLKVATLEGISDSIKR 135
+K + + E S+++ GG++Y++G + + + ++ + +++ + + IK+
Sbjct: 141 NRKMYILYDLEASEKVIGGSFYTDGEFNKKVVDYIRENICFYLYNNNNSSVPSVINYIKK 200
Query: 136 SGAFKVD-LTKQQIEEIVRALVLDNQIMEVKSNGSGEFTNIPVGKVCYKNVSKXXXXXEP 194
VD ++ I +++ L + +I KSN E + Y N
Sbjct: 201 LNN-SVDYFSENDIYRVIKTLSYEERINIYKSNNDEEL-------IYYYN--------NE 244
Query: 195 KTGSLASIPCGVCPQINICKPD--GVISPKTCVYYTKWLD 232
K L + PC C N C D I+P++C+Y +L+
Sbjct: 245 KKNFLYNFPCFSCNLFNKCNSDINTTINPRSCMYLNFYLN 284
>CGD|CAL0000539 [details] [associations]
symbol:orf19.5608 species:5476 "Candida albicans" [GO:0005829
"cytosol" evidence=IEA] [GO:0005666 "DNA-directed RNA polymerase
III complex" evidence=IEA] [GO:0005739 "mitochondrion"
evidence=IEA] [GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA] [GO:0042797 "tRNA transcription from RNA polymerase
III promoter" evidence=IEA] InterPro:IPR007832 Pfam:PF05158
PIRSF:PIRSF028763 CGD:CAL0000539 GO:GO:0003677 GO:GO:0006351
EMBL:AACQ01000034 EMBL:AACQ01000033 GO:GO:0003899 eggNOG:COG5111
KO:K03025 InterPro:IPR016049 PANTHER:PTHR12780 RefSeq:XP_719169.1
RefSeq:XP_719283.1 ProteinModelPortal:Q5ABU2 STRING:Q5ABU2
GeneID:3639054 GeneID:3639178 KEGG:cal:CaO19.13051
KEGG:cal:CaO19.5608 Uniprot:Q5ABU2
Length = 330
Score = 188 (71.2 bits), Expect = 2.0e-14, P = 2.0e-14
Identities = 36/105 (34%), Positives = 62/105 (59%)
Query: 15 SLTDHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVVNIHS 74
S++D E +IY I + GIWT+ +K + NL +IV K +K+L+N IK + ++
Sbjct: 80 SMSDDEAMIYSYIEASGREGIWTKTIKA--KTNLHQHIVQKCLKNLENNRYIKSIKSVKH 137
Query: 75 KGKKHLMAVEFEPSKEISGGAWYSEGSLDTEFIKVVKSQCLKQII 119
+K M +PS +++GG W+++ LDTEFI+ + C + I+
Sbjct: 138 PTRKIYMLYNLQPSIDVTGGPWFTDSELDTEFIETLLEVCWRFIV 182
>SGD|S000005286 [details] [associations]
symbol:RPC34 "RNA polymerase III subunit C34" species:4932
"Saccharomyces cerevisiae" [GO:0042797 "tRNA transcription from RNA
polymerase III promoter" evidence=IDA;IMP] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA;IDA]
[GO:0003899 "DNA-directed RNA polymerase activity"
evidence=IEA;IDA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0005666 "DNA-directed RNA polymerase III complex"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0005739
"mitochondrion" evidence=IPI] InterPro:IPR007832 Pfam:PF05158
PIRSF:PIRSF028763 SGD:S000005286 GO:GO:0005739 GO:GO:0003677
EMBL:BK006947 Gene3D:1.10.10.10 InterPro:IPR011991 EMBL:X77395
EMBL:X63746 GO:GO:0005666 GO:GO:0003899 Reactome:REACT_83470
Reactome:REACT_87991 GO:GO:0042797 eggNOG:COG5111 KO:K03025
InterPro:IPR016049 PANTHER:PTHR12780 GeneTree:ENSGT00390000009679
HOGENOM:HOG000186563 OrthoDB:EOG4WQ4BZ EMBL:Z71618 PIR:A45107
RefSeq:NP_014400.1 ProteinModelPortal:P32910 SMR:P32910
DIP:DIP-202N IntAct:P32910 MINT:MINT-567632 STRING:P32910
PaxDb:P32910 PeptideAtlas:P32910 EnsemblFungi:YNR003C GeneID:855737
KEGG:sce:YNR003C CYGD:YNR003c OMA:WFTDSEL NextBio:980127
Genevestigator:P32910 GermOnline:YNR003C Uniprot:P32910
Length = 317
Score = 166 (63.5 bits), Expect = 2.3e-14, Sum P(2) = 2.3e-14
Identities = 32/93 (34%), Positives = 56/93 (60%)
Query: 15 SLTDHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVVNIHS 74
+++ E L+Y I + GIW++ +K R NL ++V K +KSL+++ +K V ++
Sbjct: 85 TMSAEEALVYSYIEASGREGIWSKTIKA--RTNLHQHVVLKCLKSLESQRYVKSVKSVKF 142
Query: 75 KGKKHLMAVEFEPSKEISGGAWYSEGSLDTEFI 107
+K M +PS +I+GG W+++G LD EFI
Sbjct: 143 PTRKIYMLYSLQPSVDITGGPWFTDGELDIEFI 175
Score = 45 (20.9 bits), Expect = 2.3e-14, Sum P(2) = 2.3e-14
Identities = 11/41 (26%), Positives = 21/41 (51%)
Query: 124 ATLEGISDSIKRSGAFKVDLTKQQIEEIVRALVLDNQIMEV 164
+T + I + I + V+LT I + LV D+++ +V
Sbjct: 216 STTQEILEFITAAQVANVELTPSNIRSLCEVLVYDDKLEKV 256
>UNIPROTKB|F1LW73 [details] [associations]
symbol:F1LW73 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003899 "DNA-directed RNA polymerase activity" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
InterPro:IPR007832 Pfam:PF05158 GO:GO:0003677 GO:GO:0006351
GO:GO:0003899 InterPro:IPR016049 PANTHER:PTHR12780
GeneTree:ENSGT00390000009679 IPI:IPI00776972
Ensembl:ENSRNOT00000058847 Uniprot:F1LW73
Length = 123
Score = 105 (42.0 bits), Expect = 1.4e-05, P = 1.4e-05
Identities = 34/136 (25%), Positives = 60/136 (44%)
Query: 103 DTEFIKVVKSQCLKQIIKLKVATLEGISDSIK-----RSGAFKVDLTKQQIEEIVRALVL 157
++EF+ ++ QC K +++K T E ++ ++ G V+L+ + IE I L+
Sbjct: 3 ESEFVYMLNQQCFK-FLQMKRET-ESLASPLEVWKYCELGISTVELSLEDIETISDTLIY 60
Query: 158 DNQIMEVKSNGSGEFTNIPVGKVCYKNVSKXXXXXEPKTGSLASIPCGVCPQINICKPDG 217
D ++ E I + Y V +P L PCG+ P ++C
Sbjct: 61 DGKV---------EIILIAMK---YGTVGSVDGPMKPYRTGLVQAPCGLFP-FDVCHEGS 107
Query: 218 VISPKTCVYYTKWLDF 233
+SP C+ T WL+F
Sbjct: 108 KLSPSNCICMTWWLEF 123
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.315 0.133 0.383 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 233 228 0.00081 113 3 11 22 0.44 33
32 0.41 36
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 21
No. of states in DFA: 598 (64 KB)
Total size of DFA: 180 KB (2105 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 21.59u 0.09s 21.68t Elapsed: 00:00:01
Total cpu time: 21.60u 0.09s 21.69t Elapsed: 00:00:01
Start: Sat May 11 05:05:07 2013 End: Sat May 11 05:05:08 2013