BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 026766
(233 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|255536881|ref|XP_002509507.1| DNA-directed RNA polymerase III subunit F, putative [Ricinus
communis]
gi|223549406|gb|EEF50894.1| DNA-directed RNA polymerase III subunit F, putative [Ricinus
communis]
Length = 236
Score = 352 bits (904), Expect = 6e-95, Method: Compositional matrix adjust.
Identities = 165/231 (71%), Positives = 199/231 (86%), Gaps = 2/231 (0%)
Query: 3 KRKRPDSNAPSDSLTDHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQN 62
KRK+P+S++P+ SLT+HE +Y+VI SKQDMGIWTRDMKRE NLPDN+V KS+K LQ
Sbjct: 8 KRKQPESSSPAQSLTEHECTLYNVIWSKQDMGIWTRDMKRE--TNLPDNVVNKSLKVLQA 65
Query: 63 KSLIKEVVNIHSKGKKHLMAVEFEPSKEISGGAWYSEGSLDTEFIKVVKSQCLKQIIKLK 122
K+LIKEVVNI +KG+KH MA EFEPSKEI+GGAWY EG+LDTEFIK++K C KQ++KLK
Sbjct: 66 KNLIKEVVNIQNKGRKHYMATEFEPSKEITGGAWYVEGNLDTEFIKLLKEVCTKQVLKLK 125
Query: 123 VATLEGISDSIKRSGAFKVDLTKQQIEEIVRALVLDNQIMEVKSNGSGEFTNIPVGKVCY 182
VATLEGI+DSIKRSG F +LTKQQIEEIV+ALVLDN ++EVKSNG EF+ IP+GKVCY
Sbjct: 126 VATLEGITDSIKRSGIFNTELTKQQIEEIVKALVLDNALIEVKSNGMLEFSFIPIGKVCY 185
Query: 183 KNVSKGGGGGEPKTGSLASIPCGVCPQINICKPDGVISPKTCVYYTKWLDF 233
K V KG GEP+ G++ASIPCGVCP+I+ C PDG+ISP+TCVYY+KWLDF
Sbjct: 186 KCVGKGSTAGEPRIGAMASIPCGVCPRISQCTPDGIISPQTCVYYSKWLDF 236
>gi|224142730|ref|XP_002324707.1| predicted protein [Populus trichocarpa]
gi|222866141|gb|EEF03272.1| predicted protein [Populus trichocarpa]
Length = 239
Score = 347 bits (891), Expect = 2e-93, Method: Compositional matrix adjust.
Identities = 165/231 (71%), Positives = 194/231 (83%), Gaps = 2/231 (0%)
Query: 3 KRKRPDSNAPSDSLTDHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQN 62
KRKRP+ N+P+ SLT+HERL+YDVIRSKQD+GIWTRDMK+E + LPDN+V KS+K+LQ
Sbjct: 11 KRKRPEVNSPAQSLTEHERLLYDVIRSKQDIGIWTRDMKKEAK--LPDNVVNKSLKALQV 68
Query: 63 KSLIKEVVNIHSKGKKHLMAVEFEPSKEISGGAWYSEGSLDTEFIKVVKSQCLKQIIKLK 122
K LIKEVVNI +KG+KH MA EFEPSKEISGGAWY EGSLDTEFI+ +K C +QI +
Sbjct: 69 KKLIKEVVNIQNKGRKHFMATEFEPSKEISGGAWYLEGSLDTEFIESLKQLCKRQIERRG 128
Query: 123 VATLEGISDSIKRSGAFKVDLTKQQIEEIVRALVLDNQIMEVKSNGSGEFTNIPVGKVCY 182
VATLE ++DSI AF VD+TKQQIEEI+R L+LDN IMEVKSNG GEF +IP G+VCY
Sbjct: 129 VATLEEVTDSINSYPAFNVDVTKQQIEEILRTLILDNVIMEVKSNGMGEFASIPFGEVCY 188
Query: 183 KNVSKGGGGGEPKTGSLASIPCGVCPQINICKPDGVISPKTCVYYTKWLDF 233
K +SK G GGEPK G+LASIPCGVCP+I+ C PDG+ISPKTCVYY KWLDF
Sbjct: 189 KYISKVGLGGEPKAGALASIPCGVCPRISQCTPDGIISPKTCVYYQKWLDF 239
>gi|224052869|ref|XP_002297621.1| predicted protein [Populus trichocarpa]
gi|222844879|gb|EEE82426.1| predicted protein [Populus trichocarpa]
Length = 239
Score = 346 bits (887), Expect = 5e-93, Method: Compositional matrix adjust.
Identities = 163/231 (70%), Positives = 194/231 (83%), Gaps = 2/231 (0%)
Query: 3 KRKRPDSNAPSDSLTDHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQN 62
KRKRP+ N+P SLT+HER++YDVIRSKQD+GIWTRDMK+E + LPDN+V KS+K+L+
Sbjct: 11 KRKRPELNSPVQSLTEHERILYDVIRSKQDIGIWTRDMKKEAK--LPDNVVNKSLKALRV 68
Query: 63 KSLIKEVVNIHSKGKKHLMAVEFEPSKEISGGAWYSEGSLDTEFIKVVKSQCLKQIIKLK 122
K+LIKEVVNI +KG+KH MA EFEPSKEISGGAWY EGSLDTEFI+ ++ C +QI K
Sbjct: 69 KNLIKEVVNIQNKGRKHFMATEFEPSKEISGGAWYLEGSLDTEFIESLRQLCKRQIEKKG 128
Query: 123 VATLEGISDSIKRSGAFKVDLTKQQIEEIVRALVLDNQIMEVKSNGSGEFTNIPVGKVCY 182
VATLE ++DSI AF VD+TKQQIEEI+R L+LDN IMEVKSNG GEF +IP GKVCY
Sbjct: 129 VATLEEVTDSINSYPAFNVDVTKQQIEEILRTLILDNAIMEVKSNGMGEFASIPFGKVCY 188
Query: 183 KNVSKGGGGGEPKTGSLASIPCGVCPQINICKPDGVISPKTCVYYTKWLDF 233
+ +SKG GGEPK G+LASIPCGVCP+I+ C PDG+ISPKTCVYY KWLDF
Sbjct: 189 RYISKGALGGEPKAGALASIPCGVCPRISHCTPDGIISPKTCVYYQKWLDF 239
>gi|317106726|dbj|BAJ53222.1| JHL06P13.1 [Jatropha curcas]
Length = 235
Score = 328 bits (841), Expect = 1e-87, Method: Compositional matrix adjust.
Identities = 155/231 (67%), Positives = 191/231 (82%), Gaps = 3/231 (1%)
Query: 3 KRKRPDSNAPSDSLTDHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQN 62
KRK+P+SN+ + SLT+HE+ +Y+ IRSKQDMGIWTRDMKRE NLPD +V KS+K LQ
Sbjct: 8 KRKQPESNSSAQSLTEHEQALYNAIRSKQDMGIWTRDMKRE--TNLPDTVVNKSLKVLQA 65
Query: 63 KSLIKEVVNIHSKGKKHLMAVEFEPSKEISGGAWYSEGSLDTEFIKVVKSQCLKQIIKLK 122
K+LIKEVVNI +KG+K+ MA EFEPSKEI+GG WY EG+LDT FI V+K QC KQI KLK
Sbjct: 66 KNLIKEVVNIQNKGRKYYMATEFEPSKEITGGTWYVEGNLDTMFIGVLKDQCKKQIEKLK 125
Query: 123 VATLEGISDSIKRSGAFKVDLTKQQIEEIVRALVLDNQIMEVKSNGSGEFTNIPVGKVCY 182
VAT+E ++D I R+G V LTKQQIEEI++ALVLDN++ EVKSNG GEF +IPVGKVCY
Sbjct: 126 VATVEAVTDFINRTGVSTVHLTKQQIEEILKALVLDNKVTEVKSNGMGEFASIPVGKVCY 185
Query: 183 KNVSKGGGGGEPKTGSLASIPCGVCPQINICKPDGVISPKTCVYYTKWLDF 233
K++ K G G+PK G++ASIPCGVCP+I C P+G+ISP+TCVYY KWL+F
Sbjct: 186 KSIGK-GSSGDPKIGAMASIPCGVCPRIKHCTPNGIISPQTCVYYGKWLEF 235
>gi|225442989|ref|XP_002266428.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC6-like [Vitis
vinifera]
Length = 239
Score = 328 bits (840), Expect = 1e-87, Method: Compositional matrix adjust.
Identities = 158/232 (68%), Positives = 194/232 (83%), Gaps = 3/232 (1%)
Query: 3 KRKRPDSNAPSDSLTDHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQN 62
KRKRPD+NA S L D ER++YD+IRSK+DMGIWTRDMKRE NLPDN+VTKS+K+LQ
Sbjct: 10 KRKRPDTNAASQPLLDAERVLYDLIRSKEDMGIWTRDMKRE--TNLPDNVVTKSLKALQV 67
Query: 63 KSLIKEVVNIHSKGKKHLMAVEFEPSKEISGGAWYSEGSLDTEFIKVVKSQCLKQIIKLK 122
K LIKEVVNI SKG+KH MAVEFEPSKE++GGAWY EG+LDTE+IK++K C+K + KLK
Sbjct: 68 KKLIKEVVNIQSKGRKHYMAVEFEPSKELTGGAWYVEGNLDTEYIKILKETCVKVLSKLK 127
Query: 123 VATLEGISDSIKRSGAFKVDLTKQQIEEIVRALVLDNQIMEVKSNGSGEFTNIPVGKVCY 182
VAT EGIS+SI ++G + + QQI EI+RALVLDN+IMEV+S+GSGEF++IP+G VCY
Sbjct: 128 VATAEGISESINKTGLCATECSTQQIAEILRALVLDNEIMEVRSSGSGEFSSIPIGAVCY 187
Query: 183 KNVSK-GGGGGEPKTGSLASIPCGVCPQINICKPDGVISPKTCVYYTKWLDF 233
+ +K G GGG PK G++ASIPCGVCP+I C PDG+ISPK+C YY KWLDF
Sbjct: 188 RCTNKGGLGGGGPKIGAMASIPCGVCPRITQCTPDGIISPKSCAYYAKWLDF 239
>gi|359497031|ref|XP_003635403.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC6-like [Vitis
vinifera]
Length = 239
Score = 327 bits (837), Expect = 3e-87, Method: Compositional matrix adjust.
Identities = 157/232 (67%), Positives = 193/232 (83%), Gaps = 3/232 (1%)
Query: 3 KRKRPDSNAPSDSLTDHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQN 62
KRKRPD+N S L D ER++YD+IRSK+DMGIWTRDMKRE NLPDN+VTKS+K+LQ
Sbjct: 10 KRKRPDTNTASQPLLDAERVLYDLIRSKEDMGIWTRDMKRE--TNLPDNVVTKSLKALQV 67
Query: 63 KSLIKEVVNIHSKGKKHLMAVEFEPSKEISGGAWYSEGSLDTEFIKVVKSQCLKQIIKLK 122
K LIKEVVNI SKG+KH MAVEFEPSKE++GGAWY EG+LDTE+IK++K C++ + KLK
Sbjct: 68 KKLIKEVVNIQSKGRKHYMAVEFEPSKELTGGAWYVEGNLDTEYIKILKETCVRVLSKLK 127
Query: 123 VATLEGISDSIKRSGAFKVDLTKQQIEEIVRALVLDNQIMEVKSNGSGEFTNIPVGKVCY 182
VAT EGIS+SI ++G + + QQI EI+RALVLDN+IMEV+S+GSGEF++IP+G VCY
Sbjct: 128 VATAEGISESINKTGLCATECSTQQIAEILRALVLDNEIMEVRSSGSGEFSSIPIGAVCY 187
Query: 183 KNVSK-GGGGGEPKTGSLASIPCGVCPQINICKPDGVISPKTCVYYTKWLDF 233
+ +K G GGG P G++ASIPCGVCP+I C PDG+ISPKTC YYTKWLDF
Sbjct: 188 RCTNKGGLGGGGPTIGAMASIPCGVCPRITQCTPDGIISPKTCAYYTKWLDF 239
>gi|359497533|ref|XP_003635557.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC6-like [Vitis
vinifera]
Length = 239
Score = 327 bits (837), Expect = 3e-87, Method: Compositional matrix adjust.
Identities = 157/232 (67%), Positives = 193/232 (83%), Gaps = 3/232 (1%)
Query: 3 KRKRPDSNAPSDSLTDHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQN 62
KRKRPD+N S L D ER++YD+IRSK+DMGIWTRDMKRE NLPDN+VTKS+K+LQ
Sbjct: 10 KRKRPDTNTASQPLLDAERVLYDLIRSKEDMGIWTRDMKRE--TNLPDNVVTKSLKALQV 67
Query: 63 KSLIKEVVNIHSKGKKHLMAVEFEPSKEISGGAWYSEGSLDTEFIKVVKSQCLKQIIKLK 122
K LIKEVVNI SKG+KH MAVEFEPSKE++GGAWY EG+LDTE+IK++K C++ + KLK
Sbjct: 68 KKLIKEVVNIQSKGRKHYMAVEFEPSKELTGGAWYVEGNLDTEYIKILKKTCVRVLSKLK 127
Query: 123 VATLEGISDSIKRSGAFKVDLTKQQIEEIVRALVLDNQIMEVKSNGSGEFTNIPVGKVCY 182
VAT EGIS+SI ++G + + QQI EI+RALVLDN+IMEV+S+GSGEF++IP+G VCY
Sbjct: 128 VATAEGISESINKTGLCATECSTQQIAEILRALVLDNEIMEVRSSGSGEFSSIPIGAVCY 187
Query: 183 KNVSK-GGGGGEPKTGSLASIPCGVCPQINICKPDGVISPKTCVYYTKWLDF 233
+ +K G GGG P G++ASIPCGVCP+I C PDG+ISPKTC YYTKWLDF
Sbjct: 188 RCTNKGGLGGGGPTIGAMASIPCGVCPRITQCTPDGIISPKTCAYYTKWLDF 239
>gi|296087021|emb|CBI33284.3| unnamed protein product [Vitis vinifera]
Length = 300
Score = 327 bits (837), Expect = 3e-87, Method: Compositional matrix adjust.
Identities = 157/232 (67%), Positives = 193/232 (83%), Gaps = 3/232 (1%)
Query: 3 KRKRPDSNAPSDSLTDHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQN 62
KRKRPD+N S L D ER++YD+IRSK+DMGIWTRDMKRE NLPDN+VTKS+K+LQ
Sbjct: 71 KRKRPDTNTASQPLLDAERVLYDLIRSKEDMGIWTRDMKRE--TNLPDNVVTKSLKALQV 128
Query: 63 KSLIKEVVNIHSKGKKHLMAVEFEPSKEISGGAWYSEGSLDTEFIKVVKSQCLKQIIKLK 122
K LIKEVVNI SKG+KH MAVEFEPSKE++GGAWY EG+LDTE+IK++K C++ + KLK
Sbjct: 129 KKLIKEVVNIQSKGRKHYMAVEFEPSKELTGGAWYVEGNLDTEYIKILKKTCVRVLSKLK 188
Query: 123 VATLEGISDSIKRSGAFKVDLTKQQIEEIVRALVLDNQIMEVKSNGSGEFTNIPVGKVCY 182
VAT EGIS+SI ++G + + QQI EI+RALVLDN+IMEV+S+GSGEF++IP+G VCY
Sbjct: 189 VATAEGISESINKTGLCATECSTQQIAEILRALVLDNEIMEVRSSGSGEFSSIPIGAVCY 248
Query: 183 KNVSK-GGGGGEPKTGSLASIPCGVCPQINICKPDGVISPKTCVYYTKWLDF 233
+ +K G GGG P G++ASIPCGVCP+I C PDG+ISPKTC YYTKWLDF
Sbjct: 249 RCTNKGGLGGGGPTIGAMASIPCGVCPRITQCTPDGIISPKTCAYYTKWLDF 300
>gi|356567166|ref|XP_003551792.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC6-like
[Glycine max]
Length = 239
Score = 310 bits (794), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 145/231 (62%), Positives = 187/231 (80%), Gaps = 2/231 (0%)
Query: 3 KRKRPDSNAPSDSLTDHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQN 62
KRKR D + SLTD ER++Y++I SK+DMGIWT DMKRE NLPD+IV KS+K LQ+
Sbjct: 11 KRKRQDLALVTGSLTDGERVLYNLIHSKKDMGIWTGDMKRE--TNLPDSIVKKSLKLLQS 68
Query: 63 KSLIKEVVNIHSKGKKHLMAVEFEPSKEISGGAWYSEGSLDTEFIKVVKSQCLKQIIKLK 122
K+LIKEVVNI +KG+KH MA EFEPSKEI+GG WY++G LDT+FI +VK CLK I + K
Sbjct: 69 KNLIKEVVNIQNKGRKHYMAAEFEPSKEITGGVWYNQGRLDTDFINLVKDVCLKYIFRQK 128
Query: 123 VATLEGISDSIKRSGAFKVDLTKQQIEEIVRALVLDNQIMEVKSNGSGEFTNIPVGKVCY 182
VAT +G+ + ++SG F V++T QQI+EI+R LVLD++I+EVKS G G+F+++PVG++CY
Sbjct: 129 VATRDGVMEWSRKSGVFNVEVTTQQIDEILRTLVLDDEIVEVKSTGFGDFSSVPVGRICY 188
Query: 183 KNVSKGGGGGEPKTGSLASIPCGVCPQINICKPDGVISPKTCVYYTKWLDF 233
+ SKGG GE K G++ASIPCGVCP+IN C PDG+ISP+TCVYY KWLDF
Sbjct: 189 RCKSKGGNRGEQKPGAMASIPCGVCPRINFCTPDGIISPRTCVYYQKWLDF 239
>gi|297743442|emb|CBI36309.3| unnamed protein product [Vitis vinifera]
Length = 493
Score = 309 bits (791), Expect = 6e-82, Method: Compositional matrix adjust.
Identities = 152/226 (67%), Positives = 189/226 (83%), Gaps = 3/226 (1%)
Query: 3 KRKRPDSNAPSDSLTDHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQN 62
KRKRPD+NA S L D ER++YD+IRSK+DMGIWTRDMKRE NLPDN+VTKS+K+LQ
Sbjct: 100 KRKRPDTNAASQPLLDAERVLYDLIRSKEDMGIWTRDMKRE--TNLPDNVVTKSLKALQV 157
Query: 63 KSLIKEVVNIHSKGKKHLMAVEFEPSKEISGGAWYSEGSLDTEFIKVVKSQCLKQIIKLK 122
K LIKEVVNI SKG+KH MAVEFEPSKE++GGAWY EG+LDTE+IK++K C+K + KLK
Sbjct: 158 KKLIKEVVNIQSKGRKHYMAVEFEPSKELTGGAWYVEGNLDTEYIKILKETCVKVLSKLK 217
Query: 123 VATLEGISDSIKRSGAFKVDLTKQQIEEIVRALVLDNQIMEVKSNGSGEFTNIPVGKVCY 182
VAT EGIS+SI ++G + + QQI EI+RALVLDN+IMEV+S+GSGEF++IP+G VCY
Sbjct: 218 VATAEGISESINKTGLCATECSTQQIAEILRALVLDNEIMEVRSSGSGEFSSIPIGAVCY 277
Query: 183 KNVSK-GGGGGEPKTGSLASIPCGVCPQINICKPDGVISPKTCVYY 227
+ +K G GGG PK G++ASIPCGVCP+I C PDG+ISPK+ V+Y
Sbjct: 278 RCTNKGGLGGGGPKIGAMASIPCGVCPRITQCTPDGIISPKSSVHY 323
>gi|449461094|ref|XP_004148278.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC6-like
[Cucumis sativus]
gi|449506569|ref|XP_004162785.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC6-like
[Cucumis sativus]
Length = 243
Score = 282 bits (721), Expect = 9e-74, Method: Compositional matrix adjust.
Identities = 136/235 (57%), Positives = 180/235 (76%), Gaps = 6/235 (2%)
Query: 3 KRKRPD---SNAPSDSLTDHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKS 59
KRKRPD N+ +L E+++YD+I SKQ MGI T DMKRE + +++VTKS+KS
Sbjct: 11 KRKRPDLGTKNSSGGALIGQEKVLYDLICSKQSMGICTFDMKRETK--FAESVVTKSLKS 68
Query: 60 LQNKSLIKEVVNIHSKGKKHLMAVEFEPSKEISGGAWYSEGSLDTEFIKVVKSQCLKQII 119
LQ K LIK V + +KGKK ++ +FEP+KE++GG WY +G LD ++I +K C + I
Sbjct: 69 LQTKGLIKIVQHYQNKGKKFYLSNDFEPAKELTGGNWYRDGELDKDYINTLKQVCARMIQ 128
Query: 120 KLKVATLEGISDSIKRSGAFKVDLTKQQIEEIVRALVLDNQIMEVKSNGSGEFTNIPVGK 179
+ K+ T+EGI +S K+SGAFKV+L+++QIEEIV ALVLDNQ+MEVKS+G GEF IP+GK
Sbjct: 129 RKKLMTIEGIVESFKQSGAFKVELSREQIEEIVNALVLDNQVMEVKSSGFGEFEFIPIGK 188
Query: 180 VCYKNVSKGGG-GGEPKTGSLASIPCGVCPQINICKPDGVISPKTCVYYTKWLDF 233
+CYK ++GGG GEPKTG++ASIPCGVCP+I C P+G+ISP TCVYYTKWLDF
Sbjct: 189 ICYKYCTQGGGLKGEPKTGAMASIPCGVCPRITYCTPNGIISPATCVYYTKWLDF 243
>gi|388504992|gb|AFK40562.1| unknown [Lotus japonicus]
Length = 232
Score = 268 bits (685), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 132/233 (56%), Positives = 173/233 (74%), Gaps = 13/233 (5%)
Query: 3 KRKRPDSNAPSDSLTDHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQN 62
KRKRPD LTD E ++Y +I SK++MGIW D+KRE + +PDN+V K IKSLQ+
Sbjct: 11 KRKRPD-------LTDGEDVVYKLIHSKENMGIWIADIKRETK--MPDNMVKKCIKSLQD 61
Query: 63 KSLIKEVVNIHSKGKKHLMAVEFEPSKEISGGAWYSEGSLDTEFIKVVKSQCLKQIIKLK 122
K+L+KEVVNI S+GKK MAV+FEPSKE++GG WY++G DT+FI K LK + K K
Sbjct: 62 KNLVKEVVNIQSRGKKRYMAVDFEPSKELTGGDWYTDGKFDTDFINAAKDVFLKYVFKQK 121
Query: 123 VATLEGISDSIKRSGAFKVDLTKQQIEEIVRALVLDNQIMEVKSNGSGEFTNIPVGKVCY 182
VAT +G+ + +++ F VD+T QQ+EEI+RALVLD++I+EV+S G EF ++P GK+CY
Sbjct: 122 VATCDGVLEWTRKNAVFSVDVTAQQVEEILRALVLDDEIIEVESTGKEEFASVPKGKICY 181
Query: 183 KNVSKGGGGGEPKTGSLASIPCGVCPQINICKP--DGVISPKTCVYYTKWLDF 233
K SKGG GE K G++ASIPCGVCP+I C P DG ISP+TC Y+ KWLDF
Sbjct: 182 K--SKGGVRGEKKAGAMASIPCGVCPRIIKCAPDADGFISPRTCDYFEKWLDF 232
>gi|356530565|ref|XP_003533851.1| PREDICTED: probable DNA-directed RNA polymerase III subunit
RPC6-like [Glycine max]
Length = 237
Score = 252 bits (643), Expect = 9e-65, Method: Compositional matrix adjust.
Identities = 119/233 (51%), Positives = 169/233 (72%), Gaps = 6/233 (2%)
Query: 3 KRKRPDSNAPSDSLTDHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQN 62
KR+ ++ S S+ + ER +Y +IR +++MGIW D+KRE +++PD+++ K++K L
Sbjct: 9 KRQVLLASTQSSSMNNEERAVYTIIRERKEMGIWQGDIKREKNIHIPDSLLKKTLKMLIT 68
Query: 63 KSLIKEVVNIHSKGKKHLMAVEFEPSKEISGGAWYSEGSLDTEFIKVVKSQCLKQIIKLK 122
K+LIKEVVN+H+K KK LMA +FEPSKEISGG WY++G DTEFI + CL I + K
Sbjct: 69 KNLIKEVVNVHNKSKKLLMATDFEPSKEISGGEWYTDGKFDTEFIGALSDACLSNIRRRK 128
Query: 123 VATLEGISDSIKRSGA--FKVDLTKQQIEEIVRALVLDNQIMEVKSNGSGEFTNIPVGKV 180
VAT +GI I++ G+ F ++K Q+E+I++ LV++N++ EV S G G+F ++PVG+V
Sbjct: 129 VATCDGIVGWIRKVGSDVFPGGVSKGQVEQILKNLVMENKVQEVTSTGFGDFESVPVGEV 188
Query: 181 CYKNVSKGGGGGEPKTGSLASIPCGVCPQINICKPDGVISPKTCVYYTKWLDF 233
CY+ V KG GG G++ASIPCGVCP+I+ C PDGVISP TC YY KWLDF
Sbjct: 189 CYRLVKKGAGG----VGAMASIPCGVCPRIHSCTPDGVISPMTCQYYQKWLDF 237
>gi|356522416|ref|XP_003529842.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC6-like
[Glycine max]
Length = 229
Score = 249 bits (637), Expect = 5e-64, Method: Compositional matrix adjust.
Identities = 122/232 (52%), Positives = 168/232 (72%), Gaps = 11/232 (4%)
Query: 3 KRKRPD-SNAPSDSLTDHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQ 61
KRKR D ++ S S+ + E +Y++IR +++MGIW D+KRE N+PD+++ KSIK L
Sbjct: 8 KRKRQDLASRLSASMNNEEGRVYNIIRGRKEMGIWQGDIKRE--ANIPDSLLKKSIKMLI 65
Query: 62 NKSLIKEVVNIHSKGKKHLMAVEFEPSKEISGGAWYSEGSLDTEFIKVVKSQCLKQIIKL 121
K L+KEVVN+ ++ KK LMA +FEPS EISGG WY+EG LDTEFI + C I +L
Sbjct: 66 TKKLVKEVVNVQNRSKKLLMASDFEPSNEISGGEWYTEGKLDTEFIDKLSEACFSSIRRL 125
Query: 122 KVATLEGISDSIKRSGAFKVDLTKQQIEEIVRALVLDNQIMEVKSNGSGEFTNIPVGKVC 181
KVAT EGI + I+++G ++K Q+E+I++ LV++N++ EV S+GSG+F ++PVG+VC
Sbjct: 126 KVATCEGILEWIRKAGG---GVSKGQMEQILKKLVMENKVQEVTSDGSGDFESVPVGEVC 182
Query: 182 YKNVSKGGGGGEPKTGSLASIPCGVCPQINICKPDGVISPKTCVYYTKWLDF 233
Y+ V K G G++ASIPCGVCP+IN C PDGVISP TC YY KWLDF
Sbjct: 183 YRLVKKAAG-----VGAMASIPCGVCPRINSCTPDGVISPTTCQYYQKWLDF 229
>gi|15237811|ref|NP_197760.1| DNA binding / DNA-directed RNA polymerase [Arabidopsis thaliana]
gi|8809689|dbj|BAA97230.1| unnamed protein product [Arabidopsis thaliana]
gi|37202026|gb|AAQ89628.1| At5g23710 [Arabidopsis thaliana]
gi|332005818|gb|AED93201.1| DNA binding / DNA-directed RNA polymerase [Arabidopsis thaliana]
Length = 230
Score = 223 bits (569), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 115/236 (48%), Positives = 156/236 (66%), Gaps = 9/236 (3%)
Query: 1 MSKRKRPDSNAPSDSLTD-HERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKS 59
MSKRKRPD + L + HE+ + D+IR Q G ++KRE +P IVT+ I S
Sbjct: 1 MSKRKRPDPKSSGGDLNEPHEKKLLDLIRINQGRGATMFELKRE--KTIPATIVTRLIAS 58
Query: 60 LQNKSLIKEVVNIHSKGKKHLMAVEFEPSKEISGGAWYSEGSLDTEFIKVVKSQCLKQI- 118
L+ K+LIKEV N+++KG KH +A+EFEP E++GG WY++G+LD I+ +K++C+ +
Sbjct: 59 LRKKNLIKEVANMNNKGVKHYLAMEFEPCSELTGGEWYTDGALDLSKIEDLKAKCVMILE 118
Query: 119 -IKLKVATLEGISDSIKRSGAFKVDLTKQQIEEIVRALVLDNQIMEVKSNGSGEFTNIPV 177
+ +V TLE + + VD TK EI++ L+LDN IMEVKSNG EF + +
Sbjct: 119 RHRQRVVTLEVLCGYFVKEEKLSVDQTK----EILKNLILDNLIMEVKSNGMNEFASTRI 174
Query: 178 GKVCYKNVSKGGGGGEPKTGSLASIPCGVCPQINICKPDGVISPKTCVYYTKWLDF 233
G+VCY+ K G GEP+ G+ ASIPCGVCP I IC PDGVISP TCVY+ KWLDF
Sbjct: 175 GEVCYRLTGKKFGNGEPRAGAFASIPCGVCPHIAICSPDGVISPTTCVYFQKWLDF 230
>gi|110739405|dbj|BAF01613.1| hypothetical protein [Arabidopsis thaliana]
Length = 230
Score = 223 bits (568), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 114/236 (48%), Positives = 156/236 (66%), Gaps = 9/236 (3%)
Query: 1 MSKRKRPDSNAPSDSLTD-HERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKS 59
MSKRKRPD + L + HE+ + D+IR Q G ++KRE +P IVT+ I S
Sbjct: 1 MSKRKRPDPKSSGGDLNEPHEKKLLDLIRINQGRGATMFELKRE--KTIPATIVTRLIAS 58
Query: 60 LQNKSLIKEVVNIHSKGKKHLMAVEFEPSKEISGGAWYSEGSLDTEFIKVVKSQCLKQI- 118
L+ K+LIKEV N+++KG KH +A+EFEP E++GG WY++G+LD I+ +K++C+ +
Sbjct: 59 LRKKNLIKEVANMNNKGVKHYLAMEFEPCSELTGGEWYTDGALDLSKIEDLKAKCVMILE 118
Query: 119 -IKLKVATLEGISDSIKRSGAFKVDLTKQQIEEIVRALVLDNQIMEVKSNGSGEFTNIPV 177
+ +V TLE + + VD TK EI++ L+LDN IMEVKSNG EF + +
Sbjct: 119 RHRQRVVTLEVLCGYFVKEEKLSVDQTK----EILKNLILDNLIMEVKSNGMNEFASTRI 174
Query: 178 GKVCYKNVSKGGGGGEPKTGSLASIPCGVCPQINICKPDGVISPKTCVYYTKWLDF 233
G+VCY+ K G GEP+ G+ ASIPCGVCP I IC PDGVISP TCVY+ +WLDF
Sbjct: 175 GEVCYRLTGKKFGNGEPRAGAFASIPCGVCPHIAICSPDGVISPTTCVYFQRWLDF 230
>gi|297812521|ref|XP_002874144.1| DNA binding protein [Arabidopsis lyrata subsp. lyrata]
gi|297319981|gb|EFH50403.1| DNA binding protein [Arabidopsis lyrata subsp. lyrata]
Length = 230
Score = 214 bits (545), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 107/236 (45%), Positives = 156/236 (66%), Gaps = 9/236 (3%)
Query: 1 MSKRKRPDSNAPSDSLTD-HERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKS 59
MSKRKRPD + +L + HE+L+ ++IRS Q+ G ++KR+ +P ++T+ S
Sbjct: 1 MSKRKRPDPKSSGSNLNEPHEKLLLNLIRSSQEKGATMNELKRD--KTIPATMITRLTTS 58
Query: 60 LQNKSLIKEVVNIHSKGKKHLMAVEFEPSKEISGGAWYSEGSLDTEFIKVVKSQCLKQI- 118
L+ K+LIKEV +++++G KH +A+EFEP KE++GG WY +G+L+ I+ +K +C+ +
Sbjct: 59 LKKKNLIKEVASMNNRGVKHFLAMEFEPGKELTGGEWYIDGTLNLSKIEDLKVKCVMILE 118
Query: 119 -IKLKVATLEGISDSIKRSGAFKVDLTKQQIEEIVRALVLDNQIMEVKSNGSGEFTNIPV 177
+ +V TLE + + V+ TK EI++ LVLDN IMEVKSNG EF + +
Sbjct: 119 RHRHRVVTLEVMCGYFVKEEKLSVEQTK----EILKNLVLDNVIMEVKSNGLNEFASTRI 174
Query: 178 GKVCYKNVSKGGGGGEPKTGSLASIPCGVCPQINICKPDGVISPKTCVYYTKWLDF 233
G+VCYK K G GE + G+ AS+PCG CP I +C PDGVISP TCVY+ KWLDF
Sbjct: 175 GEVCYKLTGKKSGNGEARAGAFASVPCGACPHIGLCSPDGVISPSTCVYFQKWLDF 230
>gi|148908665|gb|ABR17440.1| unknown [Picea sitchensis]
Length = 262
Score = 205 bits (521), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 97/231 (41%), Positives = 150/231 (64%), Gaps = 6/231 (2%)
Query: 3 KRKRPDSNAPSDSLTDHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQN 62
K++ + + L+ + LIY I++ +MGIWT+DMKRE + P V K++K+L+
Sbjct: 38 KQQTKEESVRFKGLSSEDMLIYQAIKNAGNMGIWTKDMKRETNLQQPQ--VNKALKNLEA 95
Query: 63 KSLIKEVVNIHSKGKKHLMAVEFEPSKEISGGAWYSEGSLDTEFIKVVKSQCLKQIIKLK 122
+ LIK V + ++ KK M E PSKEI+GGAWY+ + DTEF +VK QCL+ +++
Sbjct: 96 RGLIKGVKCVSNQAKKVYMLAELTPSKEITGGAWYTGQNFDTEFTNIVKQQCLQFVLQQG 155
Query: 123 VATLEGISDSIKRSGAFKVDLTKQQIEEIVRALVLDNQIMEVKSNGSGEFTNIPVGKVCY 182
VAT+E ++D +++SG KV+L +++++I+ LVLD + EV S G+G+F IP+ K+CY
Sbjct: 156 VATIESVADFVRKSGISKVELKVEELKQILDMLVLDGDVEEVISTGTGDFAAIPINKLCY 215
Query: 183 KNVSKGGGGGEPKTGSLASIPCGVCPQINICKPDGVISPKTCVYYTKWLDF 233
+G ++ + +IPCGVCP + C DG+ISPKTC+YY KWL F
Sbjct: 216 ----RGSQARIQESSAFTNIPCGVCPVLRECTDDGLISPKTCIYYKKWLTF 262
>gi|357502651|ref|XP_003621614.1| DNA-directed RNA polymerase III subunit RPC6 [Medicago truncatula]
gi|355496629|gb|AES77832.1| DNA-directed RNA polymerase III subunit RPC6 [Medicago truncatula]
Length = 456
Score = 204 bits (520), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 104/217 (47%), Positives = 145/217 (66%), Gaps = 6/217 (2%)
Query: 15 SLTDHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVVNIHS 74
+L ER++YD+I SK++ GI DM+RE NLP + K +K+L NKS++KE+ +I +
Sbjct: 21 ALPTEERILYDLILSKENSGISKTDMRRE--TNLPIAALNKHMKALMNKSMVKELPSIKN 78
Query: 75 KGKKHLMAVEFEPSKEISGGAWYSEGSLDTEFIKVVKSQCLKQIIKLKVATLEGISDSIK 134
KG K M EFEPSK+I+GG +YSEGSLDT FI +K CL+ I +V+T +G + +K
Sbjct: 79 KGIKIYMGTEFEPSKDITGGHFYSEGSLDTVFIDALKQTCLQCISLERVSTCDGCLEWVK 138
Query: 135 RSGAFKVDLTKQQIEEIVRALVLDNQIMEVKSNGSGEFTNIPVGKVCYKNVSKGGGGGEP 194
RSG F +T +QIEEI++ LVLD++IM++ S G G+F +IPVGK CY SK GE
Sbjct: 139 RSGVFTTQVTGEQIEEILQTLVLDDEIMQMTSTGYGDFASIPVGKTCYICKSK----GEK 194
Query: 195 KTGSLASIPCGVCPQINICKPDGVISPKTCVYYTKWL 231
K+ PC C +++ C DGV+SP TCVY+ KW
Sbjct: 195 KSADSTPFPCFSCQRMSFCSSDGVVSPTTCVYFQKWF 231
>gi|357511407|ref|XP_003625992.1| DNA-directed RNA polymerase III subunit rpc6 [Medicago truncatula]
gi|355501007|gb|AES82210.1| DNA-directed RNA polymerase III subunit rpc6 [Medicago truncatula]
Length = 338
Score = 196 bits (498), Expect = 7e-48, Method: Compositional matrix adjust.
Identities = 98/193 (50%), Positives = 132/193 (68%), Gaps = 3/193 (1%)
Query: 39 DMKRELRVNLPDNIVTKSIKSLQNK-SLIKEVVNIHSKGKKHLMAVEFEPSKEISGGAWY 97
DM RE +NLP ++ KS+K+L K S++KEV NI ++ KH MA E EPS++I+GG +Y
Sbjct: 52 DMNRE--INLPTTVLNKSLKALVEKYSMVKEVPNIQNEDIKHYMAAELEPSEDITGGHFY 109
Query: 98 SEGSLDTEFIKVVKSQCLKQIIKLKVATLEGISDSIKRSGAFKVDLTKQQIEEIVRALVL 157
S+G LDT FI +K CLK I KV+T +G + IK+S F ++T +QIEEI++ LVL
Sbjct: 110 SDGKLDTGFIDALKKVCLKCIFMHKVSTCDGCLEWIKKSEIFNTEVTGKQIEEILQTLVL 169
Query: 158 DNQIMEVKSNGSGEFTNIPVGKVCYKNVSKGGGGGEPKTGSLASIPCGVCPQINICKPDG 217
D++IM++ S G G+F IPVGK CY SKGG GE K+G S PC C +++ C PDG
Sbjct: 170 DDEIMQMTSAGYGDFAFIPVGKTCYICKSKGGVIGEKKSGYFTSFPCFSCERMSFCSPDG 229
Query: 218 VISPKTCVYYTKW 230
V+SP CVYY KW
Sbjct: 230 VVSPGACVYYQKW 242
>gi|242096318|ref|XP_002438649.1| hypothetical protein SORBIDRAFT_10g023580 [Sorghum bicolor]
gi|241916872|gb|EER90016.1| hypothetical protein SORBIDRAFT_10g023580 [Sorghum bicolor]
Length = 260
Score = 184 bits (468), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 95/235 (40%), Positives = 141/235 (60%), Gaps = 16/235 (6%)
Query: 7 PDSNAPSDSLT------DHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSL 60
PDS P+ S T ERL Y +I + G+W D++++L + NI TK +++L
Sbjct: 34 PDSEQPTISATILAQLPTQERLAYKLIFEAGNKGMWMLDIRKKLLMG--PNIATKVVRTL 91
Query: 61 QNKSLIKEVVNIHSKGKKHLMAVEFEPSKEISGGAWYSEGSLDTEFIKVVKSQCLKQIIK 120
+ L+KEV ++ + +K MA +F+PS EI+GG WY +G LDT+ + + C Q+ +
Sbjct: 92 VGRGLLKEVSDVRHRSRKIFMATDFQPSAEITGGTWYHDGRLDTDAVSTARRCCQAQVER 151
Query: 121 LKVATLEGISDSIKRSGAFKVDLTKQQIEEIVRALVLDNQIMEVKSNGSGEFTNIPVGKV 180
L AT + I + I + V T +I +I++ +VLD + EVKS G+GEFT + G +
Sbjct: 152 LGAATAQMIHNGILKDDPRAV-YTIDKIRDIIKTMVLDKVLEEVKSTGTGEFTAVRAGTM 210
Query: 181 CYKNVSKGGGGGEPKTGSLASIPCGVCPQINICKPDGVISPKTCVYYTKWL--DF 233
CY+ V+ G P+ G + IPCGVCP+I+ C P+GVISP TCVYY KWL DF
Sbjct: 211 CYRLVT-----GAPQGGMMEGIPCGVCPRIDECSPEGVISPSTCVYYKKWLQMDF 260
>gi|51090893|dbj|BAD35466.1| unknown protein [Oryza sativa Japonica Group]
gi|125597789|gb|EAZ37569.1| hypothetical protein OsJ_21900 [Oryza sativa Japonica Group]
gi|215717140|dbj|BAG95503.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215765565|dbj|BAG87262.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 260
Score = 183 bits (464), Expect = 5e-44, Method: Compositional matrix adjust.
Identities = 88/221 (39%), Positives = 139/221 (62%), Gaps = 11/221 (4%)
Query: 15 SLTDHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVVNIHS 74
+L+ HER IY ++ + D G+ +++ ++ +P + +TK ++ L +K ++K V ++H
Sbjct: 49 ALSQHERPIYKLVFAGGDKGMSQTEIR--IKTGMPTSTLTKHLRGLTSKGVLKVVNSVHK 106
Query: 75 KGKKHLMAVEFEPSKEISGGAWYSEGSLDTEFIKVVKSQCLKQIIKLKVATLEGISDSIK 134
+ +K M V +PS EI+GG WY G LD++ + + +CL QI KL VAT E I + I
Sbjct: 107 RAEKIYMDVRIDPSPEITGGTWYRNGQLDSDAVASARRRCLDQIDKLGVATAESIHEGIS 166
Query: 135 RSGAFKVDLTKQQIEEIVRALVLDNQIMEVKSNGSGEFTNIPVGKVCYKNVSKGGGGGEP 194
R + + + +Q+ +I+R + LD ++ EV+S G+GEF ++ G+VCY+ GG
Sbjct: 167 RECS-NLAYSTEQVRDILRTMALDREVEEVRSTGAGEFGDLRAGRVCYRR------GGPV 219
Query: 195 KTGSLASIPCGVCPQINICKPDGVISPKTCVYYTKWL--DF 233
+ G + IPCGVCP+I+ C PDGVISP TCVYY KWL DF
Sbjct: 220 QGGMMERIPCGVCPRIDECSPDGVISPSTCVYYKKWLQMDF 260
>gi|357123938|ref|XP_003563664.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc6-like
[Brachypodium distachyon]
Length = 258
Score = 182 bits (463), Expect = 8e-44, Method: Compositional matrix adjust.
Identities = 91/232 (39%), Positives = 138/232 (59%), Gaps = 17/232 (7%)
Query: 7 PDSNAPSDSLTDHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLI 66
P S A ++L ER +Y + + + GIW++D++ +++ P VTK ++L + ++
Sbjct: 39 PISAAILNNLPGPEREVYKRVYAAGNKGIWSQDLRHSMQLAAP--TVTKLTRALVQRGIL 96
Query: 67 KEVVNIHSKGKKHLMAVEFEPSKEISGGAWYSEGSLDTEFIKVVKSQCLKQIIKLKVATL 126
KEV ++ +GKK M EP+ EI+GG WY G LDTE + V+ +CL QI +L AT
Sbjct: 97 KEVTDVRHRGKKVFMDSRMEPAPEITGGTWYHNGQLDTEAVAAVRRRCLDQIDRLGAATP 156
Query: 127 EGISDSIKRS---GAFKVDLTKQQIEEIVRALVLDNQIMEVKSNGSGEFTNIPVGKVCYK 183
+ + ++R + +D QI +I++ + LD + E +S G GEF+ + G+VCY+
Sbjct: 157 DMVHKGVEREDPRAGYMID----QIRDILKTMALDRVLEECRSTGEGEFSAVRSGRVCYR 212
Query: 184 NVSKGGGGGEPKTGSLASIPCGVCPQINICKPDGVISPKTCVYYTKWL--DF 233
GG P+ G + IPCGVCP+I+ C PDGVISP TCVYY KWL DF
Sbjct: 213 R------GGAPQGGMIEGIPCGVCPRIDECSPDGVISPTTCVYYKKWLQMDF 258
>gi|223975579|gb|ACN31977.1| unknown [Zea mays]
gi|413935838|gb|AFW70389.1| RNA polymerase Rpc34 subunit family protein [Zea mays]
gi|413954528|gb|AFW87177.1| RNA polymerase Rpc34 subunit family protein [Zea mays]
Length = 260
Score = 181 bits (458), Expect = 3e-43, Method: Compositional matrix adjust.
Identities = 92/235 (39%), Positives = 140/235 (59%), Gaps = 16/235 (6%)
Query: 7 PDSNAPSDS------LTDHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSL 60
PDS P S L ERL Y +I + G+W D++++L + NI TK +++L
Sbjct: 34 PDSEQPIISAAILAQLPPQERLAYKLIFEAGNKGMWMLDIRKKLLMG--PNIATKVVRTL 91
Query: 61 QNKSLIKEVVNIHSKGKKHLMAVEFEPSKEISGGAWYSEGSLDTEFIKVVKSQCLKQIIK 120
+ L+KEV ++ + +K MA +F+PS EI+GG WY +G LDT+ + + C Q+ +
Sbjct: 92 VTRRLLKEVSDVRHRSRKIFMATDFQPSAEITGGTWYHDGRLDTDAVTTARRCCQAQVER 151
Query: 121 LKVATLEGISDSIKRSGAFKVDLTKQQIEEIVRALVLDNQIMEVKSNGSGEFTNIPVGKV 180
L AT++ I I + + T +I +I++ +VLD + EVKS G+GEF ++ G +
Sbjct: 152 LGAATVQMIHHGILKDDP-RAGYTIDKIRDIIKTMVLDKVLEEVKSTGTGEFRDVRAGTM 210
Query: 181 CYKNVSKGGGGGEPKTGSLASIPCGVCPQINICKPDGVISPKTCVYYTKWL--DF 233
CY+ V+ G P+ G + IPCGVCP+I+ C P+G+ISP TCVYY KWL DF
Sbjct: 211 CYRLVT-----GAPQGGMMEGIPCGVCPRIDECSPEGIISPSTCVYYKKWLQMDF 260
>gi|226530096|ref|NP_001151058.1| RNA polymerase Rpc34 subunit family protein [Zea mays]
gi|195643984|gb|ACG41460.1| RNA polymerase Rpc34 subunit family protein [Zea mays]
Length = 260
Score = 180 bits (456), Expect = 5e-43, Method: Compositional matrix adjust.
Identities = 91/235 (38%), Positives = 140/235 (59%), Gaps = 16/235 (6%)
Query: 7 PDSNAPSDS------LTDHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSL 60
PDS P S L ERL Y +I + G+W D++++L + NI TK +++L
Sbjct: 34 PDSEQPIISAAILAQLPPQERLAYKLIFEAGNKGMWMLDIRKKLLMG--PNIATKVVRTL 91
Query: 61 QNKSLIKEVVNIHSKGKKHLMAVEFEPSKEISGGAWYSEGSLDTEFIKVVKSQCLKQIIK 120
+ L+KEV ++ + +K MA +F+PS EI+GG WY +G LDT+ + + C Q+ +
Sbjct: 92 VTRRLLKEVSDVRHRSRKIFMATDFQPSAEITGGTWYHDGRLDTDAVTTARRCCQAQVER 151
Query: 121 LKVATLEGISDSIKRSGAFKVDLTKQQIEEIVRALVLDNQIMEVKSNGSGEFTNIPVGKV 180
L AT++ I I + + T +I +I++ +VLD + EVKS G+GEF ++ G +
Sbjct: 152 LGAATVQMIHHGILKDDP-RAGYTIDKIRDIIKTMVLDKVLEEVKSTGTGEFRDVRAGTM 210
Query: 181 CYKNVSKGGGGGEPKTGSLASIPCGVCPQINICKPDGVISPKTCVYYTKWL--DF 233
CY+ V+ G P+ G++ IPCGVCP+I+ C P+G+ISP TCVYY WL DF
Sbjct: 211 CYRLVT-----GAPQGGTMEGIPCGVCPRIDECSPEGIISPSTCVYYKNWLQMDF 260
>gi|326504832|dbj|BAK06707.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326519883|dbj|BAK03866.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 267
Score = 179 bits (453), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 86/222 (38%), Positives = 133/222 (59%), Gaps = 11/222 (4%)
Query: 14 DSLTDHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVVNIH 73
++L ER +Y I + G+W++D++ +++ P +TK ++L + ++KEV ++
Sbjct: 55 NNLPGPEREVYKRIYEAGNKGMWSQDIRYTMKLAAP--TLTKLTRALVQRGILKEVTDVR 112
Query: 74 SKGKKHLMAVEFEPSKEISGGAWYSEGSLDTEFIKVVKSQCLKQIIKLKVATLEGISDSI 133
+GKK M EPS EI+GG WY G LDT+ + V+ +CL QI +L AT + + +
Sbjct: 113 HRGKKVFMDARIEPSPEITGGTWYHNGQLDTDAVAAVRRRCLDQIDRLGAATPDMVHKGV 172
Query: 134 KRSGAFKVDLTKQQIEEIVRALVLDNQIMEVKSNGSGEFTNIPVGKVCYKNVSKGGGGGE 193
+R + + QI +I++ + LD + E +S G GEF+ + G+VCY+ GG
Sbjct: 173 EREDP-RAGYSIDQIRDILQTMALDRVLEECRSTGEGEFSAVRAGRVCYRR------GGA 225
Query: 194 PKTGSLASIPCGVCPQINICKPDGVISPKTCVYYTKWL--DF 233
P+ G + IPCGVCP+I+ C PDGVISP TCVYY KWL DF
Sbjct: 226 PQGGMIEGIPCGVCPRIDECSPDGVISPPTCVYYKKWLQMDF 267
>gi|168002808|ref|XP_001754105.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162694659|gb|EDQ81006.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 361
Score = 177 bits (450), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 88/231 (38%), Positives = 144/231 (62%), Gaps = 11/231 (4%)
Query: 3 KRKRPDSNAPSDSLTDHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQN 62
K + D L+ + L+Y I + + GIWT D+KR R NL + K++K+L+
Sbjct: 142 KEQSADVAVKFKGLSSEDMLVYQSIEAAANQGIWTADLKR--RTNLQQPQINKALKNLEG 199
Query: 63 KSLIKEVVNIHSKGKKHLMAVEFEPSKEISGGAWYSEGSLDTEFIKVVKSQCLKQIIKLK 122
+SL+K V + +K +K M + PS+E++GGAWY+E D EF+ VVK QCL+ I +
Sbjct: 200 RSLVKAVKTVTNKNRKVYMLFDLTPSREVTGGAWYTEQDYDAEFVDVVKQQCLQFITRQG 259
Query: 123 VATLEGISDSIKRSGAFKVDLTKQQIEEIVRALVLDNQIMEVKSNGSGEFTNIPVGKVCY 182
+A LE I+D+IK+SG +V+L ++ ++I+ LVLD + E + G G +++ +CY
Sbjct: 260 LADLEAIADAIKKSGITQVELGLEEFKQIMDTLVLDGDVEE--TMGGGTYSS---DTLCY 314
Query: 183 KNVSKGGGGGEPKTGSLASIPCGVCPQINICKPDGVISPKTCVYYTKWLDF 233
+ V+K P+T +L ++PCG+CP ++ C+P G++SP+TCVY+ WL F
Sbjct: 315 R-VAK---ARIPETSALTNVPCGICPVLHECQPGGLVSPETCVYFNDWLSF 361
>gi|226494183|ref|NP_001147652.1| LOC100281261 [Zea mays]
gi|194702730|gb|ACF85449.1| unknown [Zea mays]
gi|195612858|gb|ACG28259.1| RNA polymerase Rpc34 subunit family protein [Zea mays]
Length = 257
Score = 177 bits (449), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 84/220 (38%), Positives = 135/220 (61%), Gaps = 10/220 (4%)
Query: 16 LTDHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVVNIHSK 75
L + ERL+Y +I + G+W D++++L + N+ TK +++L L+KEV ++ +
Sbjct: 46 LPNQERLVYKLIFEAGNKGMWMLDIRKKLL--MAPNVATKVVRTLVASGLLKEVSDVRHR 103
Query: 76 GKKHLMAVEFEPSKEISGGAWYSEGSLDTEFIKVVKSQCLKQIIKLKVATLEGISDSIKR 135
+K MA +F+PS EI+GG WY +G LDT+ + + C Q+ +L AT + I I +
Sbjct: 104 SRKIFMATDFQPSAEITGGTWYHDGRLDTDAVTTARRCCQAQVQRLGAATAQMIHQGILK 163
Query: 136 SGAFKVDLTKQQIEEIVRALVLDNQIMEVKSNGSGEFTNIPVGKVCYKNVSKGGGGGEPK 195
+ T ++ +I++ +VLD + EVKS G+G+F+ + G +CY+ V+ G P+
Sbjct: 164 EDP-RAGYTIDKVRDIIKTMVLDKVLEEVKSTGAGDFSAVRAGTMCYRLVT-----GAPQ 217
Query: 196 TGSLASIPCGVCPQINICKPDGVISPKTCVYYTKWL--DF 233
G + IPCGVCP+I+ C P+G+ISP TCVYY KWL DF
Sbjct: 218 GGMMEGIPCGVCPRIHECSPEGIISPSTCVYYKKWLQMDF 257
>gi|413943766|gb|AFW76415.1| RNA polymerase Rpc34 subunit family protein [Zea mays]
Length = 193
Score = 164 bits (416), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 77/201 (38%), Positives = 124/201 (61%), Gaps = 10/201 (4%)
Query: 35 IWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVVNIHSKGKKHLMAVEFEPSKEISGG 94
+W D++++L + N+ TK +++L L+KEV ++ + +K MA +F+PS EI+GG
Sbjct: 1 MWMLDIRKKLL--MAPNVATKVVRTLVASGLLKEVSDVRHRSRKIFMATDFQPSAEITGG 58
Query: 95 AWYSEGSLDTEFIKVVKSQCLKQIIKLKVATLEGISDSIKRSGAFKVDLTKQQIEEIVRA 154
WY +G LDT+ + + C Q+ +L AT + I I + + T ++ +I++
Sbjct: 59 TWYHDGRLDTDAVTTARRCCQAQVQRLGAATAQMIHQGILKEDP-RAGYTIDKVRDIIKT 117
Query: 155 LVLDNQIMEVKSNGSGEFTNIPVGKVCYKNVSKGGGGGEPKTGSLASIPCGVCPQINICK 214
+VLD + EVKS G+G+F+ + G +CY+ V+ G P+ G + IPCGVCP+I+ C
Sbjct: 118 MVLDKVLEEVKSTGAGDFSAVRAGTMCYRLVT-----GAPQGGMMEGIPCGVCPRIHECS 172
Query: 215 PDGVISPKTCVYYTKWL--DF 233
P+G+ISP TCVYY KWL DF
Sbjct: 173 PEGIISPSTCVYYKKWLQMDF 193
>gi|145356015|ref|XP_001422238.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144582478|gb|ABP00555.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 259
Score = 162 bits (411), Expect = 7e-38, Method: Compositional matrix adjust.
Identities = 82/230 (35%), Positives = 130/230 (56%), Gaps = 2/230 (0%)
Query: 4 RKRPDSNAPSDSLTDHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNK 63
R R A L+ + L+Y +I+ + G+WT+++K+ R NLP +TK K+L+ +
Sbjct: 32 RVREAQAAKFKGLSTEDMLVYQIIQHAGNAGMWTKELKQ--RSNLPVPQITKIFKTLEAR 89
Query: 64 SLIKEVVNIHSKGKKHLMAVEFEPSKEISGGAWYSEGSLDTEFIKVVKSQCLKQIIKLKV 123
LIK V ++ + +K M E EPS+EI+GGAWY+E D EFI V++ QC+K I +
Sbjct: 90 KLIKSVKHVAQQNRKVYMLYELEPSREITGGAWYTEQEYDAEFISVLREQCVKFIYSRER 149
Query: 124 ATLEGISDSIKRSGAFKVDLTKQQIEEIVRALVLDNQIMEVKSNGSGEFTNIPVGKVCYK 183
TL+ +SD ++ S ++DL + ++ +IV LV D ++ E+K +
Sbjct: 150 VTLKEVSDFVRASELSRIDLGQDEVLQIVNTLVYDGKVDEIKDESQDDGMGKADEDFQPI 209
Query: 184 NVSKGGGGGEPKTGSLASIPCGVCPQINICKPDGVISPKTCVYYTKWLDF 233
P++ + IPCGVCP IN C+PDG+I+P +C Y T WL+F
Sbjct: 210 TFYTRAALPVPESNAYTDIPCGVCPVINECRPDGLINPSSCEYMTAWLNF 259
>gi|159485518|ref|XP_001700791.1| hypothetical protein CHLREDRAFT_155892 [Chlamydomonas reinhardtii]
gi|158281290|gb|EDP07045.1| predicted protein [Chlamydomonas reinhardtii]
Length = 285
Score = 161 bits (408), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 84/224 (37%), Positives = 124/224 (55%), Gaps = 24/224 (10%)
Query: 16 LTDHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVVNIHSK 75
L+ E LIY I++ + G+WT+DM+ +R NL +TK +K L+ + L+K V N++S
Sbjct: 80 LSPEELLIYQCIKTAGNTGVWTKDMR--IRTNLAQPQITKILKVLEGRKLVKAVKNVNSP 137
Query: 76 GKKHLMAVEFEPSKEISGGAWYSEGSLDTEFIKVVKSQCLKQIIKLKVATLEGISDSIKR 135
+K M E EPS+E++GGAWY+E D+EFI V++ C I + +L ++ I+
Sbjct: 138 SRKVYMLAELEPSRELTGGAWYTENQFDSEFINVLREACFSYISRQGDVSLSAVAAFIRA 197
Query: 136 SGAFKVDLTKQQIEEIVRALVLDNQIMEVKSNGSGEFTN------IPVGKVCYKNVSKGG 189
G KV+L + I+ IV LV D ++ EV+ G + + +PV
Sbjct: 198 KGFSKVELRTEDIQTIVMTLVYDGRVDEVEPEGEDDNDDHYRPAVLPV------------ 245
Query: 190 GGGEPKTGSLASIPCGVCPQINICKPDGVISPKTCVYYTKWLDF 233
P + L +PCGVCP C GVISPKTCVYY KWL+F
Sbjct: 246 ----PDSTPLTDVPCGVCPVAGQCHDGGVISPKTCVYYDKWLEF 285
>gi|255080198|ref|XP_002503679.1| RNA polymerase [Micromonas sp. RCC299]
gi|226518946|gb|ACO64937.1| RNA polymerase [Micromonas sp. RCC299]
Length = 307
Score = 158 bits (400), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 85/229 (37%), Positives = 131/229 (57%), Gaps = 15/229 (6%)
Query: 16 LTDHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVVNIHSK 75
L + L+Y +I+ + GIWT+++K+ R NL +TK KSL+++ LIK V ++ +
Sbjct: 72 LASEDLLVYQIIQQSGNSGIWTKELKQ--RSNLAQAQITKIFKSLESRKLIKAVKSVSQQ 129
Query: 76 GKKHLMAVEFEPSKEISGGAWYSEGSLDTEFIKVVKSQCLKQIIKLKVATLEGISDSIKR 135
+K M E EPS+EI+GGAWY+E D EFI V++ QC K I+ TL+ +SD +K+
Sbjct: 130 NRKVYMLYELEPSREITGGAWYTEHEYDAEFINVLREQCEKFIVGQGKVTLDQVSDFVKK 189
Query: 136 SGAFKVDLTKQQIEEIVRALVLDNQIMEVKSNGSGE-FTNIPVGKVCYKNVSKGGGGGE- 193
+ V+L K+++ +IV LV D ++ + + GE + G N + G GE
Sbjct: 190 TKLSHVELGKEEVLQIVNTLVYDGKVDQFDEHEKGEGDADDAKGDGDVGNDERDYGDGEK 249
Query: 194 -----------PKTGSLASIPCGVCPQINICKPDGVISPKTCVYYTKWL 231
P+ + S+PCGVCP N C+P G+ISP+TCVY +WL
Sbjct: 250 VTYYVPAAYPVPEKSAFTSVPCGVCPVFNECRPGGLISPETCVYMEEWL 298
>gi|308813722|ref|XP_003084167.1| RNA polymerase III, subunit C34 (ISS) [Ostreococcus tauri]
gi|116056050|emb|CAL58583.1| RNA polymerase III, subunit C34 (ISS) [Ostreococcus tauri]
Length = 371
Score = 157 bits (398), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 84/232 (36%), Positives = 130/232 (56%), Gaps = 6/232 (2%)
Query: 4 RKRPDSNAPSDSLTDHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNK 63
R R + A L+ + L+Y +I+ + G+WT+++K+ R NLP +TK K+L+ +
Sbjct: 144 RVREERAAKFKGLSTEDMLVYQIIQHAGNAGMWTKELKQ--RSNLPVPQITKIFKTLEAR 201
Query: 64 SLIKEVVNIHSKGKKHLMAVEFEPSKEISGGAWYSEGSLDTEFIKVVKSQCLKQIIKLKV 123
LIK V ++ + +K M E EPS+EI+GGAWY+EG+ D EFI V++ QC+K I
Sbjct: 202 KLIKAVKHVTQQNRKVYMLYELEPSREITGGAWYTEGTHDDEFINVLREQCVKFIYSRDR 261
Query: 124 ATLEGISDSIKRSGAFKVDLTKQQIEEIVRALVLDNQIMEVKSNGSGEFTNIPVGKVCYK 183
TL +S+ ++ S V+L ++ +IV LV D ++ E + + + V +K
Sbjct: 262 VTLSEVSEFVRSSKLSHVELGTDEVLQIVNTLVFDGKVDENEDESQDD--GMTVADEDFK 319
Query: 184 NVSKGGGGG--EPKTGSLASIPCGVCPQINICKPDGVISPKTCVYYTKWLDF 233
V P + IPCGVCP IN C+PDG+I+P C Y T WL+F
Sbjct: 320 AVKYYSRAALPVPDSNPYTDIPCGVCPVINECRPDGLINPIDCEYMTAWLNF 371
>gi|303272183|ref|XP_003055453.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226463427|gb|EEH60705.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 294
Score = 152 bits (384), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 83/224 (37%), Positives = 125/224 (55%), Gaps = 14/224 (6%)
Query: 16 LTDHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVVNIHSK 75
L+ + L+Y +I+S + GIWT+++K+ + NLP +TK K L+ + LIK V N+ +
Sbjct: 72 LSSEDLLVYQIIQSSGNTGIWTKELKQ--KSNLPQTQITKIFKVLEARKLIKSVKNVAQQ 129
Query: 76 GKKHLMAVEFEPSKEISGGAWYSEGSLDTEFIKVVKSQCLKQIIKLKVATLEGISDSIKR 135
+K M E EPS+EI+GGAWY+E D EFI V++ QC K I ATL+ + D +KR
Sbjct: 130 NRKVYMLFELEPSREITGGAWYTEHEYDAEFISVLREQCDKFINSRGKATLDDVWDFVKR 189
Query: 136 SGAFKVDLTKQQIEEIVRALVLDNQIMEVKSNGSGEFTNIPVGKVCYKNVSKGGGGGE-- 193
+ VDL K+++ +IV LV D +I ++ G K++ G G +
Sbjct: 190 AKLSNVDLGKEEVLQIVNTLVYDGKIDAIEVPDPNFKPTAKKG----KDIDAGHEGEDYS 245
Query: 194 ------PKTGSLASIPCGVCPQINICKPDGVISPKTCVYYTKWL 231
P +L ++PCG+CP C P G+ISP+TC Y WL
Sbjct: 246 PAAIPIPSESALTNVPCGLCPVFEECVPGGLISPETCEYMDAWL 289
>gi|384251133|gb|EIE24611.1| RNA polymerase Rpc34 [Coccomyxa subellipsoidea C-169]
Length = 275
Score = 151 bits (382), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 83/218 (38%), Positives = 119/218 (54%), Gaps = 16/218 (7%)
Query: 16 LTDHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVVNIHSK 75
L+ + L+Y I D GIWT+D+K R NL +TK +K+L +SL+K V ++ +
Sbjct: 74 LSAEDLLVYQHIAQAGDTGIWTKDLKN--RTNLQQPQITKILKNLDQRSLVKSVKSVINP 131
Query: 76 GKKHLMAVEFEPSKEISGGAWYSEGSLDTEFIKVVKSQCLKQIIKLKVATLEGISDSIKR 135
+K + E EP++E++GGAWY+ D EFI+V++ C K I VATLE ++D ++
Sbjct: 132 SRKVYILFELEPARELTGGAWYTGQDFDAEFIQVLQQACHKYIENEGVATLEEVADFVRT 191
Query: 136 SGAFKVDLTKQQIEEIVRALVLDNQIMEVKSNGSGEFTNIPVGKVCYKNVSKGGGGGEPK 195
G +V+L + I+R L D ++E + GE V + PK
Sbjct: 192 KGFSRVELRDADVLCILRTLEFDG-LVESSLSDDGE-------------VYRPARHVVPK 237
Query: 196 TGSLASIPCGVCPQINICKPDGVISPKTCVYYTKWLDF 233
T S+PCGVCP IN C GVISP TC YY WLDF
Sbjct: 238 TSPFTSMPCGVCPVINECSDGGVISPSTCTYYQTWLDF 275
>gi|307109209|gb|EFN57447.1| hypothetical protein CHLNCDRAFT_59631 [Chlorella variabilis]
Length = 281
Score = 144 bits (364), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 78/218 (35%), Positives = 119/218 (54%), Gaps = 14/218 (6%)
Query: 16 LTDHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVVNIHSK 75
LT + L+Y I+ +MGIWTRDMK+ R NL + K +K+L+ + L+K + ++ +
Sbjct: 78 LTAEDMLVYQCIQGAGNMGIWTRDMKQ--RTNLQQPKINKILKTLEERCLVKSIKSVQNA 135
Query: 76 GKKHLMAVEFEPSKEISGGAWYSEGSLDTEFIKVVKSQCLKQIIKLKVATLEGISDSIKR 135
+K M E EP+KE++GG WY + D+EFI V++ + I ATL I IK
Sbjct: 136 SRKVYMLYELEPAKELTGGPWYGPDAFDSEFITVLQEATMSYINTKGDATLADIVRFIKE 195
Query: 136 SGAFKVDLTKQQIEEIVRALVLDNQIMEVKSNGSGEFTNIPVGKVCYKNVSKGGGGGEPK 195
+G K L + +E I+ L D +I V+ + G +P ++ ++ P+
Sbjct: 196 TGISKQALQEDDVERIINTLECDGKIEGVEGDEDG----LPHYRLPLMSI--------PE 243
Query: 196 TGSLASIPCGVCPQINICKPDGVISPKTCVYYTKWLDF 233
SIPCGVCP N C G ISP+TC+Y+ +WLDF
Sbjct: 244 ATPFTSIPCGVCPVFNECVEGGKISPQTCIYFDQWLDF 281
>gi|299473570|emb|CBN77965.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 300
Score = 144 bits (364), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 81/218 (37%), Positives = 120/218 (55%), Gaps = 8/218 (3%)
Query: 16 LTDHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVVNIHSK 75
LT + +IY VI + GIWTRD+K VN N +TK++KSL+ + L+K ++ SK
Sbjct: 84 LTPEQMMIYQVIEKAGNKGIWTRDIKTATNVN--QNTMTKTLKSLEGRHLVKTAKSVTSK 141
Query: 76 GKKHLMAVEFEPSKEISGGAWYSEGSLDTEFIKVVKSQCLKQIIKLKVATLEGISDSIKR 135
KK M E P+KEI+GG WY++ D EF+K + S L + + + L+ I+ +IK
Sbjct: 142 SKKLYMLYELTPAKEITGGPWYTDQEFDYEFVKHLSSYVLSYVKEQETPPLKDIAAAIKV 201
Query: 136 SGAFKVDLTKQQIEEIVRALVLDNQIMEVKSNGSGEFTNIPVGKVCYKNVSKGGGGGEPK 195
SG K+DL+ ++++ IV LV D + EV+ S + G V YK
Sbjct: 202 SGISKIDLSMEEVKLIVSTLVYDGLLEEVRGAASRFNRDAGDGPV-YKM-----APAVEV 255
Query: 196 TGSLASIPCGVCPQINICKPDGVISPKTCVYYTKWLDF 233
+ +PCG C + C DGV+SPKTCVY +WL+
Sbjct: 256 VNAFTEVPCGTCKVMKHCSEDGVVSPKTCVYLAEWLNL 293
>gi|224134951|ref|XP_002327530.1| predicted protein [Populus trichocarpa]
gi|222836084|gb|EEE74505.1| predicted protein [Populus trichocarpa]
Length = 127
Score = 142 bits (359), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 67/96 (69%), Positives = 82/96 (85%), Gaps = 2/96 (2%)
Query: 3 KRKRPDSNAPSDSLTDHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQN 62
KRKRP ++PS SLTDHER +YDVIRSK+DMGIWTRDMK+E NLPDN+V KS+K+L
Sbjct: 12 KRKRPGLSSPSQSLTDHERKLYDVIRSKKDMGIWTRDMKKE--TNLPDNVVNKSLKALHA 69
Query: 63 KSLIKEVVNIHSKGKKHLMAVEFEPSKEISGGAWYS 98
K+LIKEVVNI +KG+KH MA EF+PSKE++GG+W S
Sbjct: 70 KNLIKEVVNIQNKGRKHYMATEFQPSKELTGGSWIS 105
Score = 53.5 bits (127), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 20/24 (83%), Positives = 23/24 (95%)
Query: 210 INICKPDGVISPKTCVYYTKWLDF 233
I++C PDGVISP+TCVYYTKWLDF
Sbjct: 104 ISLCTPDGVISPRTCVYYTKWLDF 127
>gi|293332023|ref|NP_001168568.1| uncharacterized protein LOC100382351 [Zea mays]
gi|223949221|gb|ACN28694.1| unknown [Zea mays]
gi|413950365|gb|AFW83014.1| hypothetical protein ZEAMMB73_193969 [Zea mays]
Length = 187
Score = 140 bits (353), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 68/191 (35%), Positives = 113/191 (59%), Gaps = 12/191 (6%)
Query: 45 RVNLPDNIVTKSIKSLQNKSLIKEVVNIHSKGKKHLMAVEFEPSKEISGGAWYSEGSLDT 104
++ + NI TK +++L L+KEV ++ + +K MA +F+ EI+GG WY +G LDT
Sbjct: 7 KLLMAPNIATKVVRTLVASGLLKEVSDVRHRSRKIFMATDFQSFAEITGGTWYHDGRLDT 66
Query: 105 EFIKVVKSQCLKQIIKLKVATLEGISDSIKRSGAFKVDLTKQQIEEIVRALVLDNQIMEV 164
+ + + C Q+ +L AT + I I + + T ++++I++ +VL+ EV
Sbjct: 67 DAVSTARRCCQAQVERLGAATAQMIHHDILKEDP-RAGYTIDKVKDIIKTMVLE----EV 121
Query: 165 KSNGSGEFTNIPVGKVCYKNVSKGGGGGEPKTGSLASIPCGVCPQINICKPDGVISPKTC 224
KS G+ +F+ + G +CY+ V+ G P+ G + I CG+CP+ + C P+G+ISP TC
Sbjct: 122 KSTGTRDFSAVMAGTMCYRLVT-----GAPQGGMMEGIHCGICPRTHECSPEGIISPSTC 176
Query: 225 VYYTKWL--DF 233
VYY KWL DF
Sbjct: 177 VYYKKWLQMDF 187
>gi|301121919|ref|XP_002908686.1| DNA-directed RNA polymerase III subunit RPC6, putative
[Phytophthora infestans T30-4]
gi|262099448|gb|EEY57500.1| DNA-directed RNA polymerase III subunit RPC6, putative
[Phytophthora infestans T30-4]
Length = 297
Score = 135 bits (341), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 81/216 (37%), Positives = 119/216 (55%), Gaps = 10/216 (4%)
Query: 16 LTDHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVVNIHSK 75
LT +RL+ I + GIWTRD+K N+P IVTK+++ L+ + L+K V +I SK
Sbjct: 85 LTLEQRLVLQEIERAGNKGIWTRDIKS--HTNIPQQIVTKTLRLLETRRLVKSVKSISSK 142
Query: 76 GKKHLMAVEFEPSKEISGGAWYSEGSLDTEFIKVVKSQCLKQIIKLKVATLEGISDSIKR 135
KK M + PS EI+GG WY+E D FI + + + I ++TL I+D +
Sbjct: 143 NKKLYMLFDLVPSTEITGGPWYNEQEFDHVFIDTLSTFVYEVIKASGMSTLNAITDKVHA 202
Query: 136 SGAFKVDLTKQQIEEIVRALVLDNQIMEVKSNGSGEFTNIPVGKVCYKNVSKGGGGGEPK 195
SG KV L ++I I++ L+ D ++ EV+S T +V YK VS+
Sbjct: 203 SGISKVALGPEEIRSIIQTLMYDGRVEEVRSV---RLTPGASHEVKYK-VSQ----QITT 254
Query: 196 TGSLASIPCGVCPQINICKPDGVISPKTCVYYTKWL 231
L+ PCGVCP + C+ VISP++C+Y TKWL
Sbjct: 255 FNYLSETPCGVCPVFDQCQEGNVISPRSCLYMTKWL 290
>gi|348684826|gb|EGZ24641.1| hypothetical protein PHYSODRAFT_554736 [Phytophthora sojae]
Length = 301
Score = 135 bits (340), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 81/216 (37%), Positives = 119/216 (55%), Gaps = 10/216 (4%)
Query: 16 LTDHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVVNIHSK 75
LT +RL+ I + GIWTRD+K N+P IVTK+++ L+ + L+K V +I SK
Sbjct: 89 LTLEQRLVLQEIERAGNKGIWTRDIKS--HTNIPQQIVTKTLRLLETRRLVKSVKSISSK 146
Query: 76 GKKHLMAVEFEPSKEISGGAWYSEGSLDTEFIKVVKSQCLKQIIKLKVATLEGISDSIKR 135
KK M + PS EI+GG WY+E D FI + + + I ++TL I+D +
Sbjct: 147 NKKLYMLFDLVPSTEITGGPWYNEQEFDHVFIDTLSTFVYEVIKASGMSTLNAITDKVHA 206
Query: 136 SGAFKVDLTKQQIEEIVRALVLDNQIMEVKSNGSGEFTNIPVGKVCYKNVSKGGGGGEPK 195
SG KV L ++I I++ L+ D ++ EV+S T +V YK VS+
Sbjct: 207 SGISKVALGPEEIRSIIQTLMYDGRVEEVRSV---RLTPGASHEVKYK-VSQ----QITT 258
Query: 196 TGSLASIPCGVCPQINICKPDGVISPKTCVYYTKWL 231
L+ PCGVCP + C+ VISP++C+Y TKWL
Sbjct: 259 FNYLSETPCGVCPVFDQCQEGNVISPRSCLYMTKWL 294
>gi|302845389|ref|XP_002954233.1| hypothetical protein VOLCADRAFT_118667 [Volvox carteri f.
nagariensis]
gi|300260438|gb|EFJ44657.1| hypothetical protein VOLCADRAFT_118667 [Volvox carteri f.
nagariensis]
Length = 271
Score = 130 bits (327), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 77/220 (35%), Positives = 119/220 (54%), Gaps = 28/220 (12%)
Query: 16 LTDHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVVNIHSK 75
L+ E L+Y I++ + G +P +TK +K L+++ L+K V N+++
Sbjct: 78 LSTEELLLYQCIKAAGNTG-------------MPG--ITKILKVLESRRLVKSVKNVNNP 122
Query: 76 GKKHLMAVEFEPSKEISGGAWYSEGSLDTEFIKVVKSQCLKQI-IKLKVATLEG-ISDSI 133
+K M E EPS+E++GGAWY+E D+EFI V++ C I K KV++ G I+ I
Sbjct: 123 SRKVYMLSELEPSRELTGGAWYTENQFDSEFINVLREACYSYIKRKDKVSSSLGEIAAFI 182
Query: 134 KRSGAFKVDLTKQQIEEIVRALVLDNQIMEVKSNGSGEFTNIPVGKVCYKNVSKGGGGGE 193
+ G KV+L + I I+ LV D ++ EV+ G + + + + G
Sbjct: 183 RSRGFSKVELRIEDIHTIIMTLVYDGRVDEVEPEGDEDEDHYRLAVL-----------GI 231
Query: 194 PKTGSLASIPCGVCPQINICKPDGVISPKTCVYYTKWLDF 233
P + SL +PCGVCP C GVISP+TC+YY KWL+F
Sbjct: 232 PDSTSLTDVPCGVCPVAGECAEGGVISPQTCIYYDKWLEF 271
>gi|410917566|ref|XP_003972257.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC6-like
[Takifugu rubripes]
Length = 316
Score = 127 bits (320), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 77/234 (32%), Positives = 125/234 (53%), Gaps = 25/234 (10%)
Query: 18 DHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVVNIHSKGK 77
+ E+L+Y +I + GIW+RD++ + NLP + K +K+L++K LIK V ++ + K
Sbjct: 90 NQEKLVYQIIEDAGNKGIWSRDIR--FKSNLPLTEINKILKNLESKKLIKAVKSVAASKK 147
Query: 78 KHLMAVEFEPSKEISGGAWYSEGSLDTEFIKVVKSQCLKQI-IKLKVATLEGISDSIKRS 136
K M +P + ++GGAWYS+ ++EF++V+ QC K + K + A S ++R+
Sbjct: 148 KVYMLYNLQPDRSVTGGAWYSDQDFESEFVEVLNQQCFKFLQSKAEAARDSKHSPMVQRN 207
Query: 137 GAF----------------KVDLTKQQIEEIVRALVLDNQI-MEVKSNGSGEFTNIPVGK 179
+F KVDL+ IE I+ L+ D ++ M V + G ++ G+
Sbjct: 208 SSFATSHEVWKYICELGISKVDLSMDDIETILNTLIYDGKVEMTVIAAKEGTVGSVD-GQ 266
Query: 180 VCYKNVSKGGGGGEPKTGSLASIPCGVCPQINICKPDGVISPKTCVYYTKWLDF 233
V + +G TG L PCG+CP + C G ISP TC+Y T+WLDF
Sbjct: 267 V---KLYRGVNAVIQPTG-LIRTPCGLCPVFDDCHEGGEISPSTCIYLTEWLDF 316
>gi|405973850|gb|EKC38540.1| DNA-directed RNA polymerase III subunit RPC6 [Crassostrea gigas]
Length = 312
Score = 127 bits (318), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 83/250 (33%), Positives = 130/250 (52%), Gaps = 27/250 (10%)
Query: 1 MSKRKRPDSNAPSDSLTDHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSL 60
+ + K PDS + E+L+Y +I+ + GIW RD++ + NL V K +K+L
Sbjct: 71 LYRLKDPDSARQVKGGDNQEKLVYQIIKDAGNKGIWIRDIR--FKCNLLLTQVNKILKNL 128
Query: 61 QNKSLIKEVVNIHSKGKKHLMAVEFEPSKEISGGAWYSEGSLDTEFIKVVKSQCLKQIIK 120
+ K LIK V ++ + KK M EP + ++GGAWYS+ ++EF++V+ QC K + +
Sbjct: 129 ETKKLIKAVKSVAASKKKVYMLYNLEPDRSVTGGAWYSDQDFESEFVEVLNQQCFKYLEQ 188
Query: 121 LKVATLEGISDSI-KRSGAF----------------KVDLTKQQIEEIVRALVLDNQIME 163
A E SD I +R+ +F KV L+K+ IE I+ L+ D ++
Sbjct: 189 RAAAAREAKSDPIAQRNASFTPLEDVWKYISDLGISKVQLSKEDIETILNTLIYDGKVE- 247
Query: 164 VKSNGSGEFTNIPVGKV-CYKNVSKGGGGGEPKTGSLASIPCGVCPQINICKPDGVISPK 222
+S +G+ T G V Y++V P TG L +PCG CP + C G +SP
Sbjct: 248 -RSLVAGQATASGDGYVKLYRSVQPLI----PTTG-LMRMPCGACPVFDQCYEGGAVSPT 301
Query: 223 TCVYYTKWLD 232
TCVY +WL+
Sbjct: 302 TCVYMKEWLE 311
>gi|348538120|ref|XP_003456540.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC6-like
[Oreochromis niloticus]
Length = 316
Score = 126 bits (317), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 76/234 (32%), Positives = 125/234 (53%), Gaps = 25/234 (10%)
Query: 18 DHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVVNIHSKGK 77
+ E+L+Y +I + GIW+RD++ + NLP + K +K+L++K LIK V ++ + K
Sbjct: 90 NQEKLVYQIIEDAGNKGIWSRDIR--FKSNLPLTEINKILKNLESKKLIKAVKSVAASKK 147
Query: 78 KHLMAVEFEPSKEISGGAWYSEGSLDTEFIKVVKSQCLKQI-IKLKVATLEGISDSIKRS 136
K M +P + ++GGAWYS+ ++EF++V+ QC K + K + A S ++R+
Sbjct: 148 KVYMLYNLQPDRSVTGGAWYSDQDFESEFVEVLNQQCFKFLQSKAEAARDSKQSPMVQRN 207
Query: 137 GAF----------------KVDLTKQQIEEIVRALVLDNQI-MEVKSNGSGEFTNIPVGK 179
+F KVDL+ IE I+ L+ D ++ M V + G ++
Sbjct: 208 SSFATSHEVWKYICELGISKVDLSMDDIETILNTLIYDGKVEMTVIAAKEGTVGSVDGQM 267
Query: 180 VCYKNVSKGGGGGEPKTGSLASIPCGVCPQINICKPDGVISPKTCVYYTKWLDF 233
Y+ V+ +P TG L PCG+CP + C G ISP TC+Y ++WLDF
Sbjct: 268 KLYRGVN---AIIQP-TG-LVKTPCGLCPVFDDCHEGGEISPSTCIYMSEWLDF 316
>gi|45361485|ref|NP_989319.1| polymerase (RNA) III (DNA directed) polypeptide F, 39 kDa [Xenopus
(Silurana) tropicalis]
gi|39794390|gb|AAH64209.1| polymerase (RNA) III (DNA directed) polypeptide F, 39 kDa [Xenopus
(Silurana) tropicalis]
Length = 314
Score = 126 bits (316), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 75/253 (29%), Positives = 127/253 (50%), Gaps = 29/253 (11%)
Query: 1 MSKRKRPDSNAPSDSLTDHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSL 60
+ + K P + + E+L+Y +I + GIW+RD++ + NLP + K +K+L
Sbjct: 71 LYRLKDPQTAGKMKGSDNQEKLVYQIIEDADNKGIWSRDIR--YKSNLPLTEINKILKNL 128
Query: 61 QNKSLIKEVVNIHSKGKKHLMAVEFEPSKEISGGAWYSEGSLDTEFIKVVKSQCLKQI-I 119
++K LIK V ++ + KK M +P + ++GGAWYS+ ++EF++V+ QC K +
Sbjct: 129 ESKKLIKAVKSVAASKKKVYMLYNLQPDRSVTGGAWYSDQDFESEFVEVLNQQCFKFLQT 188
Query: 120 KLKVATLEGISDSIKRSGAF----------------KVDLTKQQIEEIVRALVLDNQI-M 162
K + A + I+R+ +F KV+L+ + IE I+ L+ D ++ M
Sbjct: 189 KAEAARDSKQNPMIQRNSSFASSHEVWKYICELGISKVELSMEDIETILNTLIYDGKVEM 248
Query: 163 EVKSNGSGEFTNIPVGKVCYKNVSKGGGGGEPKT--GSLASIPCGVCPQINICKPDGVIS 220
+ + G ++ Y+ V+ P T L PCG+CP + C G IS
Sbjct: 249 TIIAAKEGTVGSVDGQMKLYRGVN-------PITQPAGLVRTPCGLCPVFDDCHEGGEIS 301
Query: 221 PKTCVYYTKWLDF 233
P C+Y T WLDF
Sbjct: 302 PSNCIYMTDWLDF 314
>gi|426240919|ref|XP_004014341.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC6 [Ovis
aries]
gi|296481393|tpg|DAA23508.1| TPA: DNA-directed RNA polymerase III subunit RPC6 [Bos taurus]
gi|440911603|gb|ELR61252.1| DNA-directed RNA polymerase III subunit RPC6 [Bos grunniens mutus]
Length = 316
Score = 125 bits (314), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 74/234 (31%), Positives = 124/234 (52%), Gaps = 25/234 (10%)
Query: 18 DHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVVNIHSKGK 77
+ E+L+Y +I + GIW+RD++ + NLP + K +K+L++K LIK V ++ + K
Sbjct: 90 NQEKLVYQIIEDAGNKGIWSRDIR--YKSNLPLTEINKILKNLESKKLIKAVKSVAASKK 147
Query: 78 KHLMAVEFEPSKEISGGAWYSEGSLDTEFIKVVKSQCLKQI-IKLKVATLEGISDSIKRS 136
K M +P + ++GGAWYS+ ++EF++V+ QC K + K + A + I+R+
Sbjct: 148 KVYMLYNLQPDRSVTGGAWYSDQDFESEFVEVLNQQCFKFLQTKAETARESKQNPMIQRN 207
Query: 137 GAF----------------KVDLTKQQIEEIVRALVLDNQI-MEVKSNGSGEFTNIPVGK 179
+F KV+L+ + IE I+ L+ D ++ M + + G ++
Sbjct: 208 SSFASSHEVWKYICELGISKVELSMEDIETILNTLIYDGKVEMTIIAAKEGTVGSVDGHM 267
Query: 180 VCYKNVSKGGGGGEPKTGSLASIPCGVCPQINICKPDGVISPKTCVYYTKWLDF 233
Y+ VS P TG L PCG+CP + C G ISP C+Y T+WL+F
Sbjct: 268 KLYRAVSPII----PPTG-LVRAPCGLCPVFDDCHEGGEISPSNCIYMTEWLEF 316
>gi|156371113|ref|XP_001628610.1| predicted protein [Nematostella vectensis]
gi|156215591|gb|EDO36547.1| predicted protein [Nematostella vectensis]
Length = 315
Score = 125 bits (314), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 76/241 (31%), Positives = 117/241 (48%), Gaps = 23/241 (9%)
Query: 9 SNAPSDSLTDHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKE 68
+N + E+L+Y I + GIW RD++ + NL + + IK+L++K LIK
Sbjct: 82 TNQKTKGFELEEKLVYQTIEESSNKGIWIRDIR--YKCNLQMTQLNRIIKTLESKKLIKA 139
Query: 69 VVNIHSKGKKHLMAVEFEPSKEISGGAWYSEGSLDTEFIKVVKSQCLKQIIK-------- 120
V ++ + KK M EP + ++GGAWYS+ + EF++V+ QC K + +
Sbjct: 140 VKSVAASKKKVYMLFNLEPDESVTGGAWYSDQDFEAEFVEVLNQQCFKYLEQKAEKLHAD 199
Query: 121 ------LKVATLEGISDSIKRSGAFKVDLTKQQIEEIVRALVLDNQIME--VKSNGSGEF 172
A E + I + G KV L+ IE I+ L+ D ++ V + S
Sbjct: 200 PVARRNASYAPAEDVWKYITQLGISKVQLSVHDIETILSTLIFDGRVETTIVSAGTSTSR 259
Query: 173 TNIPVGKVCYKNVSKGGGGGEPKTGSLASIPCGVCPQINICKPDGVISPKTCVYYTKWLD 232
T + K Y+ + P TG + S PCGVCP I+ C+ ISPKTC+Y WLD
Sbjct: 260 TAVSGQKTLYRAIFPIV----PSTGLMTS-PCGVCPVIDHCRDGAAISPKTCIYMKDWLD 314
Query: 233 F 233
Sbjct: 315 L 315
>gi|47210380|emb|CAF95575.1| unnamed protein product [Tetraodon nigroviridis]
Length = 275
Score = 125 bits (313), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 76/234 (32%), Positives = 122/234 (52%), Gaps = 25/234 (10%)
Query: 18 DHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVVNIHSKGK 77
+ E+L+Y +I + GIW+RD++ + NLP + K +K+L+ K LIK V ++ + K
Sbjct: 49 NQEKLVYQIIEDAGNKGIWSRDIR--FKSNLPLTEINKILKNLEGKKLIKAVKSVAASKK 106
Query: 78 KHLMAVEFEPSKEISGGAWYSEGSLDTEFIKVVKSQCLKQIIKLKVATLEG-ISDSIKRS 136
K M +P + ++GGAWYS+ ++EF++V+ QC K + A+ E S ++R+
Sbjct: 107 KVYMLYNLQPDRSVTGGAWYSDQDFESEFVEVLNQQCFKFLQSKAEASREAKHSPMVQRN 166
Query: 137 GAF----------------KVDLTKQQIEEIVRALVLDNQI-MEVKSNGSGEFTNIPVGK 179
+F KVDL+ IE I+ L+ D + M V + G ++ G+
Sbjct: 167 SSFATSHEVWKYICELGISKVDLSMDDIETILNTLIYDGKAEMTVIAAKEGTVGSVD-GQ 225
Query: 180 VCYKNVSKGGGGGEPKTGSLASIPCGVCPQINICKPDGVISPKTCVYYTKWLDF 233
V + +G TG L PCG+CP + C G ISP TC+Y +WLDF
Sbjct: 226 V---KLYRGVNAVLQPTG-LVRTPCGLCPVFDDCHQGGEISPSTCIYVAEWLDF 275
>gi|348581574|ref|XP_003476552.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC6-like [Cavia
porcellus]
Length = 316
Score = 125 bits (313), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 74/234 (31%), Positives = 124/234 (52%), Gaps = 25/234 (10%)
Query: 18 DHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVVNIHSKGK 77
+ E+L+Y +I + GIW+RD++ + NLP + K +K+L++K LIK V ++ + K
Sbjct: 90 NQEKLVYQIIEDAGNKGIWSRDIR--YKSNLPLTEINKILKNLESKKLIKAVKSVAASKK 147
Query: 78 KHLMAVEFEPSKEISGGAWYSEGSLDTEFIKVVKSQCLKQI-IKLKVATLEGISDSIKRS 136
K M +P + ++GGAWYS+ ++EF++V+ QC K + K + A + I+R+
Sbjct: 148 KVYMLYNLQPDRSVTGGAWYSDQDFESEFVEVLNQQCFKFLQSKAETARESKQNPMIQRN 207
Query: 137 GAF----------------KVDLTKQQIEEIVRALVLDNQI-MEVKSNGSGEFTNIPVGK 179
+F KV+L+ + IE I+ L+ D ++ M + + G ++
Sbjct: 208 SSFASSHEVWKYICELGISKVELSMEDIETILNTLIYDGKVEMTIIAAKEGTVGSVDGHM 267
Query: 180 VCYKNVSKGGGGGEPKTGSLASIPCGVCPQINICKPDGVISPKTCVYYTKWLDF 233
Y+ VS P TG L PCG+CP + C G ISP C+Y T+WL+F
Sbjct: 268 KLYRAVSP----ILPPTG-LVRAPCGLCPVFDDCHEGGEISPSNCIYMTEWLEF 316
>gi|291388976|ref|XP_002710999.1| PREDICTED: DNA-directed RNA polymerase III 39 kDa polypeptide F
[Oryctolagus cuniculus]
Length = 316
Score = 124 bits (312), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 74/234 (31%), Positives = 124/234 (52%), Gaps = 25/234 (10%)
Query: 18 DHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVVNIHSKGK 77
+ E+L+Y +I + GIW+RD++ + NLP + K +K+L++K LIK V ++ + K
Sbjct: 90 NQEKLVYQIIEDAGNKGIWSRDIR--YKSNLPLTEINKILKNLESKKLIKAVKSVAASKK 147
Query: 78 KHLMAVEFEPSKEISGGAWYSEGSLDTEFIKVVKSQCLKQI-IKLKVATLEGISDSIKRS 136
K M +P + ++GGAWYS+ ++EF++V+ QC K + K + A + I+R+
Sbjct: 148 KVYMLYNLQPDRSVTGGAWYSDQDFESEFVEVLNQQCFKFLQSKAETARESKQNPMIQRN 207
Query: 137 GAF----------------KVDLTKQQIEEIVRALVLDNQI-MEVKSNGSGEFTNIPVGK 179
+F KV+L+ + IE I+ L+ D ++ M + + G ++
Sbjct: 208 SSFASSHEVWKYICELGISKVELSMEDIETILNTLIYDGKVEMTIIAAKEGTVGSVDGHM 267
Query: 180 VCYKNVSKGGGGGEPKTGSLASIPCGVCPQINICKPDGVISPKTCVYYTKWLDF 233
Y+ VS P TG L PCG+CP + C G ISP C+Y T+WL+F
Sbjct: 268 KLYRAVSPII----PPTG-LVRAPCGLCPVFDDCHEGGEISPSNCIYMTEWLEF 316
>gi|344280110|ref|XP_003411828.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC6-like
[Loxodonta africana]
Length = 316
Score = 124 bits (312), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 74/234 (31%), Positives = 123/234 (52%), Gaps = 25/234 (10%)
Query: 18 DHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVVNIHSKGK 77
+ E+L+Y +I + GIW+RD++ + NLP + K +K+L++K LIK V ++ + K
Sbjct: 90 NQEKLVYQIIEDAGNKGIWSRDIR--YKSNLPLTEINKILKNLESKKLIKAVKSVAASKK 147
Query: 78 KHLMAVEFEPSKEISGGAWYSEGSLDTEFIKVVKSQCLKQI-IKLKVATLEGISDSIKRS 136
K M +P + ++GGAWYS+ ++EF++V+ QC K + K + A + I+R+
Sbjct: 148 KVYMLYNLQPDRSVTGGAWYSDQDFESEFVEVLNQQCFKFLQTKAETARESKQNPMIQRN 207
Query: 137 GAF----------------KVDLTKQQIEEIVRALVLDNQI-MEVKSNGSGEFTNIPVGK 179
+F KV+L+ + IE I+ L+ D ++ M + + G ++
Sbjct: 208 SSFASSHEVWKYICELGISKVELSMEDIETILNTLIYDGKVEMTIIAAKEGTVGSVDGHM 267
Query: 180 VCYKNVSKGGGGGEPKTGSLASIPCGVCPQINICKPDGVISPKTCVYYTKWLDF 233
Y+ VS P TG L PCG+CP + C G ISP C+Y T+WL F
Sbjct: 268 KLYRAVSPII----PPTG-LVRAPCGLCPVFDDCHEGGEISPSNCIYMTEWLQF 316
>gi|386781237|ref|NP_001247594.1| DNA-directed RNA polymerase III subunit RPC6 [Macaca mulatta]
gi|402883312|ref|XP_003905166.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC6 [Papio
anubis]
gi|355563390|gb|EHH19952.1| DNA-directed RNA polymerase III subunit RPC6 [Macaca mulatta]
gi|355784723|gb|EHH65574.1| DNA-directed RNA polymerase III subunit RPC6 [Macaca fascicularis]
gi|380783835|gb|AFE63793.1| DNA-directed RNA polymerase III subunit RPC6 [Macaca mulatta]
gi|383410145|gb|AFH28286.1| DNA-directed RNA polymerase III subunit RPC6 [Macaca mulatta]
Length = 316
Score = 124 bits (312), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 74/234 (31%), Positives = 124/234 (52%), Gaps = 25/234 (10%)
Query: 18 DHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVVNIHSKGK 77
+ E+L+Y +I + GIW+RD++ + NLP + K +K+L++K LIK V ++ + K
Sbjct: 90 NQEKLVYQIIEDAGNKGIWSRDIR--YKSNLPLTEINKILKNLESKKLIKAVKSVAASKK 147
Query: 78 KHLMAVEFEPSKEISGGAWYSEGSLDTEFIKVVKSQCLKQI-IKLKVATLEGISDSIKRS 136
K M +P + ++GGAWYS+ ++EF++V+ QC K + K + A + I+R+
Sbjct: 148 KVYMLYNLQPDRSVTGGAWYSDQDFESEFVEVLNQQCFKFLQSKAETARESKQNPMIQRN 207
Query: 137 GAF----------------KVDLTKQQIEEIVRALVLDNQI-MEVKSNGSGEFTNIPVGK 179
+F KV+L+ + IE I+ L+ D ++ M + + G ++
Sbjct: 208 SSFASSHEVWKYICELGISKVELSMEDIETILNTLIYDGKVEMTIIAAKEGTVGSVDGHM 267
Query: 180 VCYKNVSKGGGGGEPKTGSLASIPCGVCPQINICKPDGVISPKTCVYYTKWLDF 233
Y+ VS P TG L PCG+CP + C G ISP C+Y T+WL+F
Sbjct: 268 KLYRAVSPII----PPTG-LVRAPCGLCPVFDDCHEGGEISPSNCIYMTEWLEF 316
>gi|84000271|ref|NP_001033237.1| DNA-directed RNA polymerase III subunit RPC6 [Bos taurus]
gi|110816413|sp|Q2T9S3.1|RPC6_BOVIN RecName: Full=DNA-directed RNA polymerase III subunit RPC6;
Short=RNA polymerase III subunit C6; AltName:
Full=DNA-directed RNA polymerase III subunit F
gi|83405748|gb|AAI11293.1| Polymerase (RNA) III (DNA directed) polypeptide F, 39 kDa [Bos
taurus]
Length = 316
Score = 124 bits (312), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 74/234 (31%), Positives = 124/234 (52%), Gaps = 25/234 (10%)
Query: 18 DHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVVNIHSKGK 77
+ E+L+Y +I + GIW+RD++ + NLP + K +K+L++K LIK V ++ + K
Sbjct: 90 NQEKLVYQIIEDAGNKGIWSRDIR--YKSNLPLTEINKILKNLESKKLIKAVKSVAASKK 147
Query: 78 KHLMAVEFEPSKEISGGAWYSEGSLDTEFIKVVKSQCLKQII-KLKVATLEGISDSIKRS 136
K M +P + ++GGAWYS+ ++EF++V+ QC K + K + A + I+R+
Sbjct: 148 KVYMLYNLQPDRSVTGGAWYSDQDFESEFVEVLNQQCFKFLQNKAETARESKQNPMIQRN 207
Query: 137 GAF----------------KVDLTKQQIEEIVRALVLDNQI-MEVKSNGSGEFTNIPVGK 179
+F KV+L+ + IE I+ L+ D ++ M + + G ++
Sbjct: 208 SSFASSHEVWKYICELGISKVELSMEDIETILNTLIYDGKVEMTIIAAKEGTVGSVDGHM 267
Query: 180 VCYKNVSKGGGGGEPKTGSLASIPCGVCPQINICKPDGVISPKTCVYYTKWLDF 233
Y+ VS P TG L PCG+CP + C G ISP C+Y T+WL+F
Sbjct: 268 KLYRAVSPII----PPTG-LVRAPCGLCPVFDDCHEGGEISPSNCIYMTEWLEF 316
>gi|42542458|gb|AAH66497.1| Polr3f protein [Danio rerio]
Length = 314
Score = 124 bits (311), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 73/236 (30%), Positives = 122/236 (51%), Gaps = 29/236 (12%)
Query: 18 DHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVVNIHSKGK 77
+ E+L+Y +I + GIW+RD++ + NLP + K +K+L++K LIK V ++ + K
Sbjct: 88 NQEKLVYQIIEDAGNKGIWSRDIR--YKSNLPLTEINKILKNLESKKLIKAVKSVAASKK 145
Query: 78 KHLMAVEFEPSKEISGGAWYSEGSLDTEFIKVVKSQCLKQI-IKLKVATLEGISDSIKRS 136
K M +P + ++GGAWYS+ ++EF++V+ QC K + K + A S ++R+
Sbjct: 146 KVYMLYNLQPDRSVTGGAWYSDQDFESEFVEVLNQQCFKFLQSKAETARDSKQSPMVQRN 205
Query: 137 GAF----------------KVDLTKQQIEEIVRALVLDNQI-MEVKSNGSGEFTNIPVGK 179
+F KVDL+ + IE I+ L+ D ++ M + + G ++
Sbjct: 206 SSFATSHEVWKYICELGISKVDLSMEDIETILNTLIFDGKVEMTIIAAKEGTVGSVDGQM 265
Query: 180 VCYKNVSKGGGGGEP--KTGSLASIPCGVCPQINICKPDGVISPKTCVYYTKWLDF 233
Y+ V+ P + L PCG+CP + C G ISP CVY +WLDF
Sbjct: 266 KLYRGVN-------PIIQPTGLVKTPCGLCPVFDDCHEGGEISPSNCVYMAEWLDF 314
>gi|328769882|gb|EGF79925.1| hypothetical protein BATDEDRAFT_12133 [Batrachochytrium
dendrobatidis JAM81]
Length = 233
Score = 124 bits (311), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 71/233 (30%), Positives = 117/233 (50%), Gaps = 24/233 (10%)
Query: 15 SLTDHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVVNIHS 74
S++D+ER++Y I++ + G W +D+K ++ L IVT+ IK+L+ K LIK V ++ +
Sbjct: 11 SMSDNERIVYQFIKASGNKGTWIKDIK--VKSGLHAQIVTQMIKNLEKKVLIKAVKSVKT 68
Query: 75 KGKKHLMAVEFEPSKEISGGAWYSEGSLDTEFIKVVKSQCLKQIIKLKV----------- 123
KK M E +PS E++GGAWY++ LD EFI + Q K I
Sbjct: 69 PTKKVYMLSELDPSVELTGGAWYTDQELDVEFIDQLAHQIYKYICSKSFPPNTNSIFPSS 128
Query: 124 ---ATLEGISDSIKRSGAFKVDLTKQQIEEIVRALVLDNQIMEVKSNGSGEFTNIPVGKV 180
T + I +SG V L+ ++ ++ L+ D ++ +++S +G +I +
Sbjct: 129 HPYPTCNDLHKWISKSGITTVQLSHTDVQSLIDRLIFDGKVEQIQSIHTGSNEDIWAYRA 188
Query: 181 CYKNVSKGGGGGEPKTGSLASIPCGVCPQINICKPDGVISPKTCVYYTKWLDF 233
+V G +PCG CP + C+ G +SP CVY+ KWL F
Sbjct: 189 TRSSVLNG--------SVWTDVPCGRCPVFSFCEEGGPVSPSGCVYFKKWLSF 233
>gi|345790127|ref|XP_857138.2| PREDICTED: DNA-directed RNA polymerase III subunit RPC6 isoform 2
[Canis lupus familiaris]
Length = 316
Score = 124 bits (311), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 73/234 (31%), Positives = 124/234 (52%), Gaps = 25/234 (10%)
Query: 18 DHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVVNIHSKGK 77
+ E+L+Y +I + GIW+RD++ + NLP + K +K+L++K LIK V ++ + K
Sbjct: 90 NQEKLVYQIIEDAGNKGIWSRDIR--YKSNLPLTEINKILKNLESKKLIKAVKSVAASKK 147
Query: 78 KHLMAVEFEPSKEISGGAWYSEGSLDTEFIKVVKSQCLKQI-IKLKVATLEGISDSIKRS 136
K M +P + ++GGAWYS+ ++EF++V+ QC K + K + A + I+R+
Sbjct: 148 KVYMLYNLQPDRSVTGGAWYSDQDFESEFVEVLNQQCFKFLQTKAETARESKQNPMIQRN 207
Query: 137 GAF----------------KVDLTKQQIEEIVRALVLDNQI-MEVKSNGSGEFTNIPVGK 179
+F KV+L+ + IE I+ L+ D ++ M + + G ++
Sbjct: 208 SSFASSHEVWKYICELGISKVELSMEDIETILNTLIYDGKVEMTIIAAKEGTVGSVDGHM 267
Query: 180 VCYKNVSKGGGGGEPKTGSLASIPCGVCPQINICKPDGVISPKTCVYYTKWLDF 233
Y+ V+ P TG L PCG+CP + C G ISP C+Y T+WL+F
Sbjct: 268 KLYRAVNPII----PPTG-LVRAPCGLCPVFDDCHEGGEISPSNCIYMTEWLEF 316
>gi|354468114|ref|XP_003496512.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC6-like
[Cricetulus griseus]
Length = 316
Score = 124 bits (311), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 73/234 (31%), Positives = 124/234 (52%), Gaps = 25/234 (10%)
Query: 18 DHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVVNIHSKGK 77
+ E+L+Y +I + GIW+RD++ + NLP + K +K+L++K LIK V ++ + K
Sbjct: 90 NQEKLVYQIIEDAGNKGIWSRDIR--YKSNLPLTEINKILKNLESKKLIKAVKSVAASKK 147
Query: 78 KHLMAVEFEPSKEISGGAWYSEGSLDTEFIKVVKSQCLKQI-IKLKVATLEGISDSIKRS 136
K M +P + ++GGAWYS+ ++EF++V+ QC K + K + A + I+R+
Sbjct: 148 KVYMLYNLQPDRSVTGGAWYSDQDFESEFVEVLNQQCFKFLQTKAETARESKQNPMIQRN 207
Query: 137 GAF----------------KVDLTKQQIEEIVRALVLDNQI-MEVKSNGSGEFTNIPVGK 179
+F KV+L+ + IE I+ L+ D ++ M + + G ++
Sbjct: 208 SSFASSHEVWKYICELGISKVELSMEDIETILNTLIYDGKVEMTIIAAKEGTVGSVDGHM 267
Query: 180 VCYKNVSKGGGGGEPKTGSLASIPCGVCPQINICKPDGVISPKTCVYYTKWLDF 233
Y+ V+ P TG L PCG+CP + C G ISP C+Y T+WL+F
Sbjct: 268 KLYRAVNPIL----PPTG-LVRAPCGLCPVFDDCHEGGEISPSNCIYMTEWLEF 316
>gi|417398858|gb|JAA46462.1| Putative rna polymerase iii subunit c34 [Desmodus rotundus]
Length = 316
Score = 124 bits (311), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 73/234 (31%), Positives = 124/234 (52%), Gaps = 25/234 (10%)
Query: 18 DHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVVNIHSKGK 77
+ E+L+Y +I + GIW+RD++ + NLP + K +K+L++K LIK V ++ + K
Sbjct: 90 NQEKLVYQIIEDAGNKGIWSRDIR--YKSNLPLTEINKILKNLESKKLIKAVKSVAASKK 147
Query: 78 KHLMAVEFEPSKEISGGAWYSEGSLDTEFIKVVKSQCLKQI-IKLKVATLEGISDSIKRS 136
K M +P + ++GGAWYS+ ++EF++V+ QC K + K + A + I+R+
Sbjct: 148 KVYMLYNLQPDRSVTGGAWYSDQDFESEFVEVLNQQCFKFLQTKAETARESKQNPMIQRN 207
Query: 137 GAF----------------KVDLTKQQIEEIVRALVLDNQI-MEVKSNGSGEFTNIPVGK 179
+F KV+L+ + IE I+ L+ D ++ M + + G ++
Sbjct: 208 SSFASSHEVWKYICELGISKVELSMEDIETILNTLIYDGKVEMTIIAAKEGTVGSVDGHM 267
Query: 180 VCYKNVSKGGGGGEPKTGSLASIPCGVCPQINICKPDGVISPKTCVYYTKWLDF 233
Y+ V+ P TG L PCG+CP + C G ISP C+Y T+WL+F
Sbjct: 268 KLYRAVNPII----PPTG-LVRAPCGLCPVFDDCHEGGEISPSNCIYMTEWLEF 316
>gi|431894136|gb|ELK03936.1| DNA-directed RNA polymerase III subunit RPC6 [Pteropus alecto]
Length = 316
Score = 124 bits (311), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 73/234 (31%), Positives = 124/234 (52%), Gaps = 25/234 (10%)
Query: 18 DHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVVNIHSKGK 77
+ E+L+Y +I + GIW+RD++ + NLP + K +K+L++K LIK V ++ + K
Sbjct: 90 NQEKLVYQIIEDAGNKGIWSRDIR--YKSNLPLTEINKILKNLESKKLIKAVKSVAASKK 147
Query: 78 KHLMAVEFEPSKEISGGAWYSEGSLDTEFIKVVKSQCLKQI-IKLKVATLEGISDSIKRS 136
K M +P + ++GGAWYS+ ++EF++V+ QC K + K + A + I+R+
Sbjct: 148 KVYMLYNLQPDRSVTGGAWYSDQDFESEFVEVLNQQCFKFLQTKAETARESKQNPMIQRN 207
Query: 137 GAF----------------KVDLTKQQIEEIVRALVLDNQI-MEVKSNGSGEFTNIPVGK 179
+F KV+L+ + IE I+ L+ D ++ M + + G ++
Sbjct: 208 SSFASSHEVWKYICELGISKVELSMEDIETILNTLIYDGKVEMTIITAKEGTVGSVDGHM 267
Query: 180 VCYKNVSKGGGGGEPKTGSLASIPCGVCPQINICKPDGVISPKTCVYYTKWLDF 233
Y+ V+ P TG L PCG+CP + C G ISP C+Y T+WL+F
Sbjct: 268 KLYRAVNPII----PPTG-LVRAPCGLCPVFDDCHEGGEISPSNCIYMTEWLEF 316
>gi|301780510|ref|XP_002925671.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC6-like
[Ailuropoda melanoleuca]
gi|410954415|ref|XP_003983860.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC6 [Felis
catus]
Length = 316
Score = 124 bits (311), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 73/234 (31%), Positives = 124/234 (52%), Gaps = 25/234 (10%)
Query: 18 DHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVVNIHSKGK 77
+ E+L+Y +I + GIW+RD++ + NLP + K +K+L++K LIK V ++ + K
Sbjct: 90 NQEKLVYQIIEDAGNKGIWSRDIR--YKSNLPLTEINKILKNLESKKLIKAVKSVAASKK 147
Query: 78 KHLMAVEFEPSKEISGGAWYSEGSLDTEFIKVVKSQCLKQI-IKLKVATLEGISDSIKRS 136
K M +P + ++GGAWYS+ ++EF++V+ QC K + K + A + I+R+
Sbjct: 148 KVYMLYNLQPDRSVTGGAWYSDQDFESEFVEVLNQQCFKFLQTKAETARESKQNPMIQRN 207
Query: 137 GAF----------------KVDLTKQQIEEIVRALVLDNQI-MEVKSNGSGEFTNIPVGK 179
+F KV+L+ + IE I+ L+ D ++ M + + G ++
Sbjct: 208 SSFASSHEVWKYICELGISKVELSMEDIETILNTLIYDGKVEMTIIAAKEGTVGSVDGHM 267
Query: 180 VCYKNVSKGGGGGEPKTGSLASIPCGVCPQINICKPDGVISPKTCVYYTKWLDF 233
Y+ V+ P TG L PCG+CP + C G ISP C+Y T+WL+F
Sbjct: 268 KLYRAVNPII----PPTG-LVRAPCGLCPVFDDCHEGGEISPSNCIYMTEWLEF 316
>gi|281352669|gb|EFB28253.1| hypothetical protein PANDA_015203 [Ailuropoda melanoleuca]
Length = 296
Score = 124 bits (310), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 73/234 (31%), Positives = 124/234 (52%), Gaps = 25/234 (10%)
Query: 18 DHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVVNIHSKGK 77
+ E+L+Y +I + GIW+RD++ + NLP + K +K+L++K LIK V ++ + K
Sbjct: 70 NQEKLVYQIIEDAGNKGIWSRDIR--YKSNLPLTEINKILKNLESKKLIKAVKSVAASKK 127
Query: 78 KHLMAVEFEPSKEISGGAWYSEGSLDTEFIKVVKSQCLKQI-IKLKVATLEGISDSIKRS 136
K M +P + ++GGAWYS+ ++EF++V+ QC K + K + A + I+R+
Sbjct: 128 KVYMLYNLQPDRSVTGGAWYSDQDFESEFVEVLNQQCFKFLQTKAETARESKQNPMIQRN 187
Query: 137 GAF----------------KVDLTKQQIEEIVRALVLDNQI-MEVKSNGSGEFTNIPVGK 179
+F KV+L+ + IE I+ L+ D ++ M + + G ++
Sbjct: 188 SSFASSHEVWKYICELGISKVELSMEDIETILNTLIYDGKVEMTIIAAKEGTVGSVDGHM 247
Query: 180 VCYKNVSKGGGGGEPKTGSLASIPCGVCPQINICKPDGVISPKTCVYYTKWLDF 233
Y+ V+ P TG L PCG+CP + C G ISP C+Y T+WL+F
Sbjct: 248 KLYRAVNPII----PPTG-LVRAPCGLCPVFDDCHEGGEISPSNCIYMTEWLEF 296
>gi|296200276|ref|XP_002747521.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC6 [Callithrix
jacchus]
gi|403283636|ref|XP_003933219.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC6 [Saimiri
boliviensis boliviensis]
Length = 316
Score = 124 bits (310), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 73/234 (31%), Positives = 123/234 (52%), Gaps = 25/234 (10%)
Query: 18 DHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVVNIHSKGK 77
+ E+L+Y +I + GIW+RD++ + NLP + K +K+L++K LIK V ++ + K
Sbjct: 90 NQEKLVYQIIEDAGNKGIWSRDIR--YKSNLPLTEINKILKNLESKKLIKAVKSVAASKK 147
Query: 78 KHLMAVEFEPSKEISGGAWYSEGSLDTEFIKVVKSQCLKQIIKLKVATLEGISDS-IKRS 136
K M +P + ++GGAWYS+ ++EF++V+ QC K + A E + I+R+
Sbjct: 148 KVYMLYNLQPDRSVTGGAWYSDQDFESEFVEVLNQQCFKFLQSKAEAARESKQNPMIQRN 207
Query: 137 GAF----------------KVDLTKQQIEEIVRALVLDNQI-MEVKSNGSGEFTNIPVGK 179
+F KV+L+ + IE I+ L+ D ++ M + + G ++
Sbjct: 208 SSFASSHEVWKYICELGISKVELSMEDIETILNTLIYDGKVEMTIIAAKEGTVGSVDGHM 267
Query: 180 VCYKNVSKGGGGGEPKTGSLASIPCGVCPQINICKPDGVISPKTCVYYTKWLDF 233
Y+ V+ P TG L PCG+CP + C G ISP C+Y T+WL+F
Sbjct: 268 KLYRAVNPII----PPTG-LVRAPCGLCPVFDDCHEGGEISPSNCIYMTEWLEF 316
>gi|114681157|ref|XP_001141875.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC6 isoform 2
[Pan troglodytes]
gi|395751982|ref|XP_003779338.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC6 isoform 2
[Pongo abelii]
gi|397478658|ref|XP_003810659.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC6 isoform 2
[Pan paniscus]
gi|426391057|ref|XP_004061903.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC6 isoform 2
[Gorilla gorilla gorilla]
gi|116284007|gb|AAH16761.1| POLR3F protein [Homo sapiens]
gi|119630646|gb|EAX10241.1| polymerase (RNA) III (DNA directed) polypeptide F, 39 kDa, isoform
CRA_c [Homo sapiens]
Length = 275
Score = 124 bits (310), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 73/234 (31%), Positives = 124/234 (52%), Gaps = 25/234 (10%)
Query: 18 DHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVVNIHSKGK 77
+ E+L+Y +I + GIW+RD++ + NLP + K +K+L++K LIK V ++ + K
Sbjct: 49 NQEKLVYQIIEDAGNKGIWSRDIR--YKSNLPLTEINKILKNLESKKLIKAVKSVAASKK 106
Query: 78 KHLMAVEFEPSKEISGGAWYSEGSLDTEFIKVVKSQCLKQI-IKLKVATLEGISDSIKRS 136
K M +P + ++GGAWYS+ ++EF++V+ QC K + K + A + I+R+
Sbjct: 107 KVYMLYNLQPDRSVTGGAWYSDQDFESEFVEVLNQQCFKFLQSKAETARESKQNPMIQRN 166
Query: 137 GAF----------------KVDLTKQQIEEIVRALVLDNQI-MEVKSNGSGEFTNIPVGK 179
+F KV+L+ + IE I+ L+ D ++ M + + G ++
Sbjct: 167 SSFASSHEVWKYICELGISKVELSMEDIETILNTLIYDGKVEMTIIAAKEGTVGSVDGHM 226
Query: 180 VCYKNVSKGGGGGEPKTGSLASIPCGVCPQINICKPDGVISPKTCVYYTKWLDF 233
Y+ V+ P TG L PCG+CP + C G ISP C+Y T+WL+F
Sbjct: 227 KLYRAVNPII----PPTG-LVRAPCGLCPVFDDCHEGGEISPSNCIYMTEWLEF 275
>gi|157821329|ref|NP_001101254.1| DNA-directed RNA polymerase III subunit RPC6 [Rattus norvegicus]
gi|149041225|gb|EDL95158.1| polymerase (RNA) III (DNA directed) polypeptide F (predicted),
isoform CRA_a [Rattus norvegicus]
Length = 371
Score = 123 bits (309), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 73/234 (31%), Positives = 124/234 (52%), Gaps = 25/234 (10%)
Query: 18 DHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVVNIHSKGK 77
+ E+L+Y +I + GIW+RD++ + NLP + K +K+L++K LIK V ++ + K
Sbjct: 145 NQEKLVYQIIEDAGNKGIWSRDIR--YKSNLPLTEINKILKNLESKKLIKAVKSVAASKK 202
Query: 78 KHLMAVEFEPSKEISGGAWYSEGSLDTEFIKVVKSQCLKQI-IKLKVATLEGISDSIKRS 136
K M +P + ++GGAWYS+ ++EF++V+ QC K + K + A + I+R+
Sbjct: 203 KVYMLYNLQPDRSVTGGAWYSDQDFESEFVEVLNQQCFKFLQSKAETARESKQNPVIQRN 262
Query: 137 GAF----------------KVDLTKQQIEEIVRALVLDNQI-MEVKSNGSGEFTNIPVGK 179
+F KV+L+ + IE I+ L+ D ++ M + + G ++
Sbjct: 263 SSFASSHEVWKYICELGISKVELSMEDIETILNTLIYDGKVDMTIIAAKEGTVGSVDGHM 322
Query: 180 VCYKNVSKGGGGGEPKTGSLASIPCGVCPQINICKPDGVISPKTCVYYTKWLDF 233
Y+ V+ P TG L PCG+CP + C G ISP C+Y T+WL+F
Sbjct: 323 KLYRAVNP----ILPPTG-LVRAPCGLCPVFDDCHEGGEISPSNCIYMTEWLEF 371
>gi|291222494|ref|XP_002731250.1| PREDICTED: Polr3f protein-like [Saccoglossus kowalevskii]
Length = 309
Score = 123 bits (309), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 76/248 (30%), Positives = 126/248 (50%), Gaps = 29/248 (11%)
Query: 3 KRKRPDSNAPSDSLTDHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQN 62
K K P +++ + E+LIY +I + GIW RD++ + NL V+K +++L++
Sbjct: 74 KLKDPQTSSKMKGSDNQEKLIYQIIEEAGNKGIWIRDIR--YKSNLLMTQVSKILRNLES 131
Query: 63 KSLIKEVVNIHSKGKKHLMAVEFEPSKEISGGAWYSEGSLDTEFIKVVKSQCLKQIIKLK 122
K LIK + ++ + KK M +P + ++GGAWYS+ ++EF++V+ QC+K + + +
Sbjct: 132 KKLIKAIKSVGASKKKVYMLYNIDPDRSVTGGAWYSDQDFESEFVEVLNQQCMKFLHQTR 191
Query: 123 VATLEGISDSI-KRSGAF----------------KVDLTKQQIEEIVRALVLDNQIMEVK 165
V D I KR+ ++ KV L+ + IE I+ L+ DN++ EV
Sbjct: 192 VNAENSKHDPITKRNASYASSNEVWKFISELGISKVQLSVEDIETILNTLIYDNKV-EVT 250
Query: 166 SNGSGEFTNIPVGKVCYKNVSKGGGGGEPKTGSLASIPCGVCPQINICKPDGVISPKTCV 225
S E I + + + G L CGVCP N C+ G ISP TC+
Sbjct: 251 VVASVESGQIKLYRSIELLIEPTG---------LMRTACGVCPVFNECQEGGTISPTTCI 301
Query: 226 YYTKWLDF 233
Y +WLD+
Sbjct: 302 YMKEWLDY 309
>gi|33598952|ref|NP_006457.2| DNA-directed RNA polymerase III subunit RPC6 [Homo sapiens]
gi|297706431|ref|XP_002830042.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC6 isoform 1
[Pongo abelii]
gi|332238168|ref|XP_003268274.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC6 [Nomascus
leucogenys]
gi|332858027|ref|XP_003316891.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC6 [Pan
troglodytes]
gi|397478656|ref|XP_003810658.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC6 isoform 1
[Pan paniscus]
gi|426391055|ref|XP_004061902.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC6 isoform 1
[Gorilla gorilla gorilla]
gi|20139728|sp|Q9H1D9.1|RPC6_HUMAN RecName: Full=DNA-directed RNA polymerase III subunit RPC6;
Short=RNA polymerase III subunit C6; AltName:
Full=DNA-directed RNA polymerase III subunit F; AltName:
Full=RNA polymerase III 39 kDa subunit; Short=RPC39
gi|15214899|gb|AAH12588.1| Polymerase (RNA) III (DNA directed) polypeptide F, 39 kDa [Homo
sapiens]
gi|119630645|gb|EAX10240.1| polymerase (RNA) III (DNA directed) polypeptide F, 39 kDa, isoform
CRA_b [Homo sapiens]
gi|123984551|gb|ABM83621.1| polymerase (RNA) III (DNA directed) polypeptide F, 39 kDa
[synthetic construct]
gi|123999175|gb|ABM87168.1| polymerase (RNA) III (DNA directed) polypeptide F, 39 kDa
[synthetic construct]
gi|158255220|dbj|BAF83581.1| unnamed protein product [Homo sapiens]
gi|208967094|dbj|BAG73561.1| polymerase (RNA) III (DNA directed) polypeptide F, 39 kDa
[synthetic construct]
gi|410211180|gb|JAA02809.1| polymerase (RNA) III (DNA directed) polypeptide F, 39 kDa [Pan
troglodytes]
gi|410261662|gb|JAA18797.1| polymerase (RNA) III (DNA directed) polypeptide F, 39 kDa [Pan
troglodytes]
gi|410293744|gb|JAA25472.1| polymerase (RNA) III (DNA directed) polypeptide F, 39 kDa [Pan
troglodytes]
gi|410330073|gb|JAA33983.1| polymerase (RNA) III (DNA directed) polypeptide F, 39 kDa [Pan
troglodytes]
Length = 316
Score = 123 bits (309), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 73/234 (31%), Positives = 124/234 (52%), Gaps = 25/234 (10%)
Query: 18 DHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVVNIHSKGK 77
+ E+L+Y +I + GIW+RD++ + NLP + K +K+L++K LIK V ++ + K
Sbjct: 90 NQEKLVYQIIEDAGNKGIWSRDIR--YKSNLPLTEINKILKNLESKKLIKAVKSVAASKK 147
Query: 78 KHLMAVEFEPSKEISGGAWYSEGSLDTEFIKVVKSQCLKQI-IKLKVATLEGISDSIKRS 136
K M +P + ++GGAWYS+ ++EF++V+ QC K + K + A + I+R+
Sbjct: 148 KVYMLYNLQPDRSVTGGAWYSDQDFESEFVEVLNQQCFKFLQSKAETARESKQNPMIQRN 207
Query: 137 GAF----------------KVDLTKQQIEEIVRALVLDNQI-MEVKSNGSGEFTNIPVGK 179
+F KV+L+ + IE I+ L+ D ++ M + + G ++
Sbjct: 208 SSFASSHEVWKYICELGISKVELSMEDIETILNTLIYDGKVEMTIIAAKEGTVGSVDGHM 267
Query: 180 VCYKNVSKGGGGGEPKTGSLASIPCGVCPQINICKPDGVISPKTCVYYTKWLDF 233
Y+ V+ P TG L PCG+CP + C G ISP C+Y T+WL+F
Sbjct: 268 KLYRAVNPII----PPTG-LVRAPCGLCPVFDDCHEGGEISPSNCIYMTEWLEF 316
>gi|194224116|ref|XP_001490686.2| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase III
subunit RPC6-like [Equus caballus]
Length = 316
Score = 123 bits (309), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 73/234 (31%), Positives = 124/234 (52%), Gaps = 25/234 (10%)
Query: 18 DHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVVNIHSKGK 77
+ E+L+Y +I + GIW+RD++ + NLP + K +K+L++K LIK V ++ + K
Sbjct: 90 NQEKLVYQIIEDAGNKGIWSRDIR--YKSNLPLTEINKILKNLESKKLIKAVKSVAASKK 147
Query: 78 KHLMAVEFEPSKEISGGAWYSEGSLDTEFIKVVKSQCLKQI-IKLKVATLEGISDSIKRS 136
K M +P + ++GGAWYS+ ++EF++V+ QC K + K + A + I+R+
Sbjct: 148 KVYMLYNLQPDRSVTGGAWYSDQDFESEFVEVLNQQCFKFLQSKAETARESKQNPMIQRN 207
Query: 137 GAF----------------KVDLTKQQIEEIVRALVLDNQI-MEVKSNGSGEFTNIPVGK 179
+F KV+L+ + IE I+ L+ D ++ M + + G ++
Sbjct: 208 SSFASSHEVWKYICELGISKVELSMEDIETILNTLIYDGKVEMTIIAAKEGTVGSVDGHM 267
Query: 180 VCYKNVSKGGGGGEPKTGSLASIPCGVCPQINICKPDGVISPKTCVYYTKWLDF 233
Y+ V+ P TG L PCG+CP + C G ISP C+Y T+WL+F
Sbjct: 268 KLYRAVNPII----PPTG-LVRAPCGLCPVFDDCHEGGEISPSNCIYMTEWLEF 316
>gi|62898157|dbj|BAD97018.1| DNA-directed RNA polymerase III 39 kDa polypeptide F variant [Homo
sapiens]
Length = 316
Score = 123 bits (309), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 73/234 (31%), Positives = 124/234 (52%), Gaps = 25/234 (10%)
Query: 18 DHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVVNIHSKGK 77
+ E+L+Y +I + GIW+RD++ + NLP + K +K+L++K LIK V ++ + K
Sbjct: 90 NQEKLVYQIIEDAGNKGIWSRDVR--YKSNLPLTEINKILKNLESKKLIKAVKSVAASKK 147
Query: 78 KHLMAVEFEPSKEISGGAWYSEGSLDTEFIKVVKSQCLKQI-IKLKVATLEGISDSIKRS 136
K M +P + ++GGAWYS+ ++EF++V+ QC K + K + A + I+R+
Sbjct: 148 KVYMLYNLQPDRSVTGGAWYSDQDFESEFVEVLNQQCFKFLQSKAETARESKQNPMIQRN 207
Query: 137 GAF----------------KVDLTKQQIEEIVRALVLDNQI-MEVKSNGSGEFTNIPVGK 179
+F KV+L+ + IE I+ L+ D ++ M + + G ++
Sbjct: 208 SSFASSHEVWKYICELGISKVELSMEDIETILNTLIYDGKVEMTIIAAKEGTVGSVDGHM 267
Query: 180 VCYKNVSKGGGGGEPKTGSLASIPCGVCPQINICKPDGVISPKTCVYYTKWLDF 233
Y+ V+ P TG L PCG+CP + C G ISP C+Y T+WL+F
Sbjct: 268 KLYRAVNPII----PPTG-LVRAPCGLCPVFDDCHEGGEISPSNCIYMTEWLEF 316
>gi|318037614|ref|NP_001188039.1| DNA-directed RNA polymerase III subunit rpc6 [Ictalurus punctatus]
gi|308324663|gb|ADO29466.1| DNA-directed RNA polymerase III subunit rpc6 [Ictalurus punctatus]
Length = 314
Score = 123 bits (308), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 75/234 (32%), Positives = 124/234 (52%), Gaps = 25/234 (10%)
Query: 18 DHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVVNIHSKGK 77
+ E+L+Y +I + GIW+RD++ + NLP + K +K+L++K LIK V ++ + K
Sbjct: 88 NQEKLVYQIIEDAGNKGIWSRDIR--YKSNLPLTEINKILKNLESKKLIKAVKSVAASKK 145
Query: 78 KHLMAVEFEPSKEISGGAWYSEGSLDTEFIKVVKSQCLKQI-IKLKVATLEGISDSIKRS 136
K M +P + ++GGAWYS+ ++EF++V+ QC K + K + A S ++R+
Sbjct: 146 KVYMLYNLQPDRSVTGGAWYSDQDFESEFVEVLNQQCFKFLQSKAEAARDSKQSPMVQRN 205
Query: 137 GAF----------------KVDLTKQQIEEIVRALVLDNQI-MEVKSNGSGEFTNIPVGK 179
+F KVDL+ + IE I+ L+ D ++ M + + G +
Sbjct: 206 SSFATSYEVWKYICELGISKVDLSMEDIETILNTLIYDGKVEMTIIAAKEGTVGCVDGQM 265
Query: 180 VCYKNVSKGGGGGEPKTGSLASIPCGVCPQINICKPDGVISPKTCVYYTKWLDF 233
Y+ V+ +P TG L PCG+CP + C G ISP TC+Y +WLDF
Sbjct: 266 KLYRGVN---SIIQP-TG-LVKTPCGLCPVFDDCHEGGEISPSTCIYMGEWLDF 314
>gi|335775487|gb|AEH58588.1| DNA-directed RNA polymerase III subunit RPC-like protein [Equus
caballus]
Length = 230
Score = 123 bits (308), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 73/234 (31%), Positives = 124/234 (52%), Gaps = 25/234 (10%)
Query: 18 DHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVVNIHSKGK 77
+ E+L+Y +I + GIW+RD++ + NLP + K +K+L++K LIK V ++ + K
Sbjct: 4 NQEKLVYQIIEDAGNKGIWSRDIR--YKSNLPLTEINKILKNLESKKLIKAVKSVAASKK 61
Query: 78 KHLMAVEFEPSKEISGGAWYSEGSLDTEFIKVVKSQCLKQI-IKLKVATLEGISDSIKRS 136
K M +P + ++GGAWYS+ ++EF++V+ QC K + K + A + I+R+
Sbjct: 62 KVYMLYNLQPDRSVTGGAWYSDQDFESEFVEVLNQQCFKFLQSKAETARESKQNPMIQRN 121
Query: 137 GAF----------------KVDLTKQQIEEIVRALVLDNQI-MEVKSNGSGEFTNIPVGK 179
+F KV+L+ + IE I+ L+ D ++ M + + G ++
Sbjct: 122 SSFASSHEVWKYICELGISKVELSMEDIETILNTLIYDGKVEMTIIAAKEGTVGSVDGHM 181
Query: 180 VCYKNVSKGGGGGEPKTGSLASIPCGVCPQINICKPDGVISPKTCVYYTKWLDF 233
Y+ V+ P TG L PCG+CP + C G ISP C+Y T+WL+F
Sbjct: 182 KLYRAVNPII----PPTG-LVRAPCGLCPVFDDCHEGGEISPSNCIYMTEWLEF 230
>gi|390339281|ref|XP_785983.3| PREDICTED: DNA-directed RNA polymerase III subunit RPC6-like
isoform 1 [Strongylocentrotus purpuratus]
Length = 311
Score = 123 bits (308), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 75/234 (32%), Positives = 124/234 (52%), Gaps = 27/234 (11%)
Query: 18 DHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVVNIHSKGK 77
+ ERL+Y +I + GIWTRD++ L+ NL + K +K+L+++ LIK V ++ + K
Sbjct: 87 NQERLVYQIIEQSGNKGIWTRDIR--LKSNLQLTQLNKILKNLESRKLIKAVKSVGAARK 144
Query: 78 KHLMAVEFEPSKEISGGAWYSEGSLDTEFIKVVKSQCLKQIIKLKVATLEGISDS--IKR 135
K M P ++GG WYS+ ++EF++V+ QC K ++ KV ++ + +KR
Sbjct: 145 KAYMLFNLTPDPSVTGGTWYSDQEFESEFVEVLNHQCFK-FLQQKVESVSALQLDPLLKR 203
Query: 136 SGAF----------------KVDLTKQQIEEIVRALVLDNQIMEVKSNGSGEFTNIPVGK 179
+ +F KVDL+ I I+ L+ D ++ S G+G ++ K
Sbjct: 204 NRSFVSPEEVWKFITELRISKVDLSVDDINTILNTLIYDGKVEMTISAGAGTSSSDSSSK 263
Query: 180 VCYKNVSKGGGGGEPKTGSLASIPCGVCPQINICKPDGVISPKTCVYYTKWLDF 233
+ Y+ + +P TG + S PCGVCP N C G ISP TC+Y +W+D+
Sbjct: 264 L-YRAIQP---LTQP-TGLMRS-PCGVCPVFNQCYEGGAISPSTCIYMKEWMDY 311
>gi|49618979|gb|AAT68074.1| RNA polymerase III 39kDa subunit [Danio rerio]
Length = 314
Score = 123 bits (308), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 72/236 (30%), Positives = 122/236 (51%), Gaps = 29/236 (12%)
Query: 18 DHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVVNIHSKGK 77
+ E+L+Y +I + GIW+RD++ + N+P + K +K+L++K LIK V ++ + K
Sbjct: 88 NQEKLVYQIIEDAGNKGIWSRDIR--YKSNVPLTEINKILKNLESKKLIKAVKSVAASKK 145
Query: 78 KHLMAVEFEPSKEISGGAWYSEGSLDTEFIKVVKSQCLKQI-IKLKVATLEGISDSIKRS 136
K M +P + ++GGAWYS+ ++EF++V+ QC K + K + A S ++R+
Sbjct: 146 KVYMLYNLQPDRSVTGGAWYSDQDFESEFVEVLNQQCFKFLQSKAETARDSKQSPMVQRN 205
Query: 137 GAF----------------KVDLTKQQIEEIVRALVLDNQI-MEVKSNGSGEFTNIPVGK 179
+F KVDL+ + IE I+ L+ D ++ M + + G ++
Sbjct: 206 SSFATSHEVWKYICELGISKVDLSMEDIETILNTLIFDGKVEMTIIAAKEGTVGSVDGQM 265
Query: 180 VCYKNVSKGGGGGEP--KTGSLASIPCGVCPQINICKPDGVISPKTCVYYTKWLDF 233
Y+ V+ P + L PCG+CP + C G ISP CVY +WLDF
Sbjct: 266 KLYRGVN-------PIIQPTGLVKTPCGLCPVFDDCHEGGEISPSNCVYMAEWLDF 314
>gi|41055399|ref|NP_957481.1| DNA-directed RNA polymerase III subunit RPC6 [Danio rerio]
gi|30353810|gb|AAH51782.1| Polymerase (RNA) III (DNA directed) polypeptide F [Danio rerio]
Length = 314
Score = 123 bits (308), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 72/236 (30%), Positives = 121/236 (51%), Gaps = 29/236 (12%)
Query: 18 DHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVVNIHSKGK 77
+ E+L+Y +I + GIW+RD++ + NLP + K +K+L++K LIK V ++ + K
Sbjct: 88 NQEKLVYQIIEDAGNKGIWSRDIR--YKSNLPLTEINKILKNLESKKLIKAVKSVAASKK 145
Query: 78 KHLMAVEFEPSKEISGGAWYSEGSLDTEFIKVVKSQCLKQI-IKLKVATLEGISDSIKRS 136
K M +P + ++GGAWYS+ ++EF++ + QC K + K + A S ++R+
Sbjct: 146 KVYMLYNLQPDRSVTGGAWYSDQDFESEFVEALNQQCFKFLQSKAETARDSKQSPMVQRN 205
Query: 137 GAF----------------KVDLTKQQIEEIVRALVLDNQI-MEVKSNGSGEFTNIPVGK 179
+F KVDL+ + IE I+ L+ D ++ M + + G ++
Sbjct: 206 SSFATSHEVWKYICELGISKVDLSMEDIETILNTLIFDGKVEMTIIAAKEGTVGSVDGQM 265
Query: 180 VCYKNVSKGGGGGEP--KTGSLASIPCGVCPQINICKPDGVISPKTCVYYTKWLDF 233
Y+ V+ P + L PCG+CP + C G ISP CVY +WLDF
Sbjct: 266 KLYRGVN-------PIIQPTGLVKTPCGLCPVFDDCHEGGEISPSNCVYMAEWLDF 314
>gi|226442700|ref|NP_001139930.1| DNA-directed RNA polymerase III subunit RPC6 [Salmo salar]
gi|221220164|gb|ACM08743.1| DNA-directed RNA polymerase III subunit RPC6 [Salmo salar]
Length = 314
Score = 122 bits (307), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 76/235 (32%), Positives = 124/235 (52%), Gaps = 27/235 (11%)
Query: 18 DHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVVNIHSKGK 77
+ E+L+Y VI + GIW+RD++ + NLP + K +K+L++K LIK V ++ + K
Sbjct: 88 NQEKLVYQVIEDAGNKGIWSRDIR--YKSNLPLTEINKILKNLESKKLIKAVKSVAASKK 145
Query: 78 KHLMAVEFEPSKEISGGAWYSEGSLDTEFIKVVKSQCLKQI-IKLKVATLEGISDSIKRS 136
K M +P + ++GGAWYS+ ++EF++V+ QC K + K +VA + ++R+
Sbjct: 146 KVYMLYNLQPDRSVTGGAWYSDQDFESEFVEVLNQQCFKFLQSKAEVARDSKQNPMVQRN 205
Query: 137 GAF----------------KVDLTKQQIEEIVRALVLDNQI-MEVKSNGSGEFTNIP-VG 178
+F KVDL+ + IE I+ L+ D ++ M + + G ++
Sbjct: 206 SSFATSHEVWKYICELGISKVDLSMEDIETILNTLIYDGKVEMTIIAAKEGTVGSVDGQM 265
Query: 179 KVCYKNVSKGGGGGEPKTGSLASIPCGVCPQINICKPDGVISPKTCVYYTKWLDF 233
K+C +G TG L PCG+CP + C G ISP CVY +WLDF
Sbjct: 266 KLC-----RGVNPIIQPTG-LVKAPCGLCPVFDDCHEGGEISPSNCVYMAEWLDF 314
>gi|395851941|ref|XP_003798506.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC6 [Otolemur
garnettii]
Length = 316
Score = 122 bits (307), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 72/234 (30%), Positives = 124/234 (52%), Gaps = 25/234 (10%)
Query: 18 DHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVVNIHSKGK 77
+ E+L+Y +I + GIW+RD++ + NLP + K +K+L++K LIK V ++ + K
Sbjct: 90 NQEKLVYQIIEDAGNKGIWSRDIR--YKSNLPLTEINKILKNLESKKLIKAVKSVAASKK 147
Query: 78 KHLMAVEFEPSKEISGGAWYSEGSLDTEFIKVVKSQCLKQI-IKLKVATLEGISDSIKRS 136
K M +P + ++GGAWYS+ ++EF++V+ QC K + K + A + I+R+
Sbjct: 148 KVYMLYNMQPDRSVTGGAWYSDHDFESEFVEVLNQQCFKFLQTKAETARESKQNPVIQRN 207
Query: 137 GAF----------------KVDLTKQQIEEIVRALVLDNQI-MEVKSNGSGEFTNIPVGK 179
+F KV+L+ + IE I+ L+ D ++ M + + G ++
Sbjct: 208 SSFASSHEVWKYICELGISKVELSMEDIETILNTLIYDGKVEMTIIAAKEGTVGSVDGHM 267
Query: 180 VCYKNVSKGGGGGEPKTGSLASIPCGVCPQINICKPDGVISPKTCVYYTKWLDF 233
Y+ V+ P TG L PCG+CP + C G ISP C+Y T+WL++
Sbjct: 268 KLYRAVNPII----PPTG-LVRAPCGLCPVFDDCHEGGEISPSNCIYMTEWLEY 316
>gi|326914992|ref|XP_003203806.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC6-like
[Meleagris gallopavo]
Length = 314
Score = 122 bits (306), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 72/236 (30%), Positives = 122/236 (51%), Gaps = 29/236 (12%)
Query: 18 DHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVVNIHSKGK 77
+ E+L+Y +I + GIW+RD++ + NLP + K +K+L++K LIK V ++ + K
Sbjct: 88 NQEKLVYQIIEDAGNKGIWSRDIR--YKSNLPLTEINKILKNLESKKLIKAVKSVAASKK 145
Query: 78 KHLMAVEFEPSKEISGGAWYSEGSLDTEFIKVVKSQCLKQIIKLKVATLEGISDS-IKRS 136
K M +P + ++GGAWYS+ ++EF++V+ QC K + A E + I+R+
Sbjct: 146 KVYMLYNLQPDRSVTGGAWYSDQDFESEFVEVLNQQCFKFLQSKAEAARESKQNPMIQRN 205
Query: 137 GAF----------------KVDLTKQQIEEIVRALVLDNQI-MEVKSNGSGEFTNIPVGK 179
+F KV+L+ + IE I+ L+ D ++ M + + G ++
Sbjct: 206 SSFASSHEVWKYICELGISKVELSMEDIETILNTLIYDGKVEMTIIAAKEGTVGSVDGQM 265
Query: 180 VCYKNVSKGGGGGEP--KTGSLASIPCGVCPQINICKPDGVISPKTCVYYTKWLDF 233
Y+ VS P + L PCG+CP + C G ISP C+Y T+WL+F
Sbjct: 266 KLYRAVS-------PLIQPTGLVRTPCGLCPVFDDCHEGGEISPSNCIYMTEWLEF 314
>gi|313661432|ref|NP_001186330.1| DNA-directed RNA polymerase III subunit RPC6 [Gallus gallus]
Length = 314
Score = 122 bits (306), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 72/236 (30%), Positives = 122/236 (51%), Gaps = 29/236 (12%)
Query: 18 DHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVVNIHSKGK 77
+ E+L+Y +I + GIW+RD++ + NLP + K +K+L++K LIK V ++ + K
Sbjct: 88 NQEKLVYQIIEDAGNKGIWSRDIR--YKSNLPLTEINKILKNLESKKLIKAVKSVAASKK 145
Query: 78 KHLMAVEFEPSKEISGGAWYSEGSLDTEFIKVVKSQCLKQIIKLKVATLEGISDS-IKRS 136
K M +P + ++GGAWYS+ ++EF++V+ QC K + A E + I+R+
Sbjct: 146 KVYMLYNLQPDRSVTGGAWYSDQDFESEFVEVLNQQCFKFLQSKAEAARESKQNPMIQRN 205
Query: 137 GAF----------------KVDLTKQQIEEIVRALVLDNQI-MEVKSNGSGEFTNIPVGK 179
+F KV+L+ + IE I+ L+ D ++ M + + G ++
Sbjct: 206 SSFASSHEVWKYICELGISKVELSMEDIETILNTLIYDGKVEMTIIAAKEGTVGSVDGQM 265
Query: 180 VCYKNVSKGGGGGEP--KTGSLASIPCGVCPQINICKPDGVISPKTCVYYTKWLDF 233
Y+ VS P + L PCG+CP + C G ISP C+Y T+WL+F
Sbjct: 266 KLYRAVS-------PLIQPTGLVRTPCGLCPVFDDCHEGGEISPSNCIYMTEWLEF 314
>gi|449275236|gb|EMC84159.1| DNA-directed RNA polymerase III subunit RPC6 [Columba livia]
Length = 314
Score = 122 bits (306), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 72/236 (30%), Positives = 122/236 (51%), Gaps = 29/236 (12%)
Query: 18 DHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVVNIHSKGK 77
+ E+L+Y +I + GIW+RD++ + NLP + K +K+L++K LIK V ++ + K
Sbjct: 88 NQEKLVYQIIEDAGNKGIWSRDIR--YKSNLPLTEINKILKNLESKKLIKAVKSVAASKK 145
Query: 78 KHLMAVEFEPSKEISGGAWYSEGSLDTEFIKVVKSQCLKQIIKLKVATLEGISDS-IKRS 136
K M +P + ++GGAWYS+ ++EF++V+ QC K + A E + I+R+
Sbjct: 146 KVYMLYNLQPDRSVTGGAWYSDQDFESEFVEVLNQQCFKFLQSKAEAARESKQNPMIQRN 205
Query: 137 GAF----------------KVDLTKQQIEEIVRALVLDNQI-MEVKSNGSGEFTNIPVGK 179
+F KV+L+ + IE I+ L+ D ++ M + + G ++
Sbjct: 206 SSFASSHEVWKYICELGISKVELSMEDIETILNTLIYDGKVEMTIIAAKEGTVGSVDGQM 265
Query: 180 VCYKNVSKGGGGGEP--KTGSLASIPCGVCPQINICKPDGVISPKTCVYYTKWLDF 233
Y+ VS P + L PCG+CP + C G ISP C+Y T+WL+F
Sbjct: 266 KLYRAVS-------PLIQPTGLVRTPCGLCPVFDDCHEGGEISPSNCIYMTEWLEF 314
>gi|224047392|ref|XP_002198916.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC6
[Taeniopygia guttata]
Length = 314
Score = 122 bits (305), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 72/236 (30%), Positives = 123/236 (52%), Gaps = 29/236 (12%)
Query: 18 DHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVVNIHSKGK 77
+ E+L+Y +I + GIW+RD++ + NLP + K +K+L++K LIK V ++ + K
Sbjct: 88 NQEKLVYQIIEDAGNKGIWSRDIR--YKSNLPLTEINKILKNLESKKLIKAVKSVAASKK 145
Query: 78 KHLMAVEFEPSKEISGGAWYSEGSLDTEFIKVVKSQCLKQI-IKLKVATLEGISDSIKRS 136
K M +P + ++GGAWYS+ ++EF++V+ QC K + K + A + I+R+
Sbjct: 146 KVYMLYNLQPDRSVTGGAWYSDQDFESEFVEVLNQQCFKFLQSKAEAARDSKQNPMIQRN 205
Query: 137 GAF----------------KVDLTKQQIEEIVRALVLDNQI-MEVKSNGSGEFTNIPVGK 179
+F KV+L+ + IE I+ L+ D ++ M + + G ++
Sbjct: 206 SSFASSHEVWKYICELGISKVELSMEDIETILNTLIYDGKVEMTIIAAKEGTVGSVDGQM 265
Query: 180 VCYKNVSKGGGGGEP--KTGSLASIPCGVCPQINICKPDGVISPKTCVYYTKWLDF 233
Y+ VS P + L PCG+CP + C G ISP C+Y T+WL+F
Sbjct: 266 RLYRAVS-------PLIQPTGLVRTPCGLCPVFDDCHEGGEISPSNCIYMTEWLEF 314
>gi|126303656|ref|XP_001374149.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC6-like
[Monodelphis domestica]
Length = 316
Score = 122 bits (305), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 72/236 (30%), Positives = 123/236 (52%), Gaps = 29/236 (12%)
Query: 18 DHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVVNIHSKGK 77
+ E+L+Y +I + GIW+RD++ + NLP + K +K+L++K LIK V ++ + K
Sbjct: 90 NQEKLVYQIIEDAGNKGIWSRDIR--YKSNLPLTEINKILKNLESKKLIKAVKSVAASKK 147
Query: 78 KHLMAVEFEPSKEISGGAWYSEGSLDTEFIKVVKSQCLKQI-IKLKVATLEGISDSIKRS 136
K M +P + ++GGAWYS+ ++EF++V+ QC K + K + A + I+R+
Sbjct: 148 KVYMLYNLQPDRSVTGGAWYSDQDFESEFVEVLNQQCFKFLQSKAETARESKQNPMIQRN 207
Query: 137 GAF----------------KVDLTKQQIEEIVRALVLDNQI-MEVKSNGSGEFTNIPVGK 179
+F KV+L+ + IE I+ L+ D ++ M + + G ++
Sbjct: 208 SSFASSHEVWKYICELGISKVELSMEDIETILNTLIYDGKVEMTIIAAKEGTVGSVDGHM 267
Query: 180 VCYKNVSKGGGGGEP--KTGSLASIPCGVCPQINICKPDGVISPKTCVYYTKWLDF 233
Y+ VS P + L PCG+CP + C G ISP C+Y T+WL+F
Sbjct: 268 KLYRAVS-------PIIQPTGLVRAPCGLCPVFDDCHEGGEISPSNCIYMTEWLEF 316
>gi|27754160|ref|NP_084039.2| DNA-directed RNA polymerase III subunit RPC6 [Mus musculus]
gi|20139517|sp|Q921X6.1|RPC6_MOUSE RecName: Full=DNA-directed RNA polymerase III subunit RPC6;
Short=RNA polymerase III subunit C6; AltName:
Full=DNA-directed RNA polymerase III subunit F
gi|14318737|gb|AAH09159.1| Polymerase (RNA) III (DNA directed) polypeptide F [Mus musculus]
gi|26331194|dbj|BAC29327.1| unnamed protein product [Mus musculus]
gi|26345468|dbj|BAC36385.1| unnamed protein product [Mus musculus]
gi|74194833|dbj|BAE26008.1| unnamed protein product [Mus musculus]
gi|126035615|gb|ABN72532.1| DNA-directed RNA polymerase III polypeptide F [Mus spretus]
gi|148696514|gb|EDL28461.1| polymerase (RNA) III (DNA directed) polypeptide F, isoform CRA_a
[Mus musculus]
Length = 316
Score = 121 bits (304), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 72/234 (30%), Positives = 124/234 (52%), Gaps = 25/234 (10%)
Query: 18 DHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVVNIHSKGK 77
+ E+L+Y +I + GIW+RD++ + NLP + K +K+L++K LIK V ++ + K
Sbjct: 90 NQEKLVYQIIEDAGNKGIWSRDIR--YKSNLPLTEINKILKNLESKKLIKAVKSVAASKK 147
Query: 78 KHLMAVEFEPSKEISGGAWYSEGSLDTEFIKVVKSQCLKQI-IKLKVATLEGISDSIKRS 136
K M +P + ++GGAWYS+ ++EF++V+ QC K + K + A + I+R+
Sbjct: 148 KVYMLYNLQPDRSVTGGAWYSDQDFESEFVEVLNQQCFKFLQSKAETARESKQNPVIQRN 207
Query: 137 GAF----------------KVDLTKQQIEEIVRALVLDNQI-MEVKSNGSGEFTNIPVGK 179
+F KV+L+ + IE I+ L+ D ++ M + + G ++
Sbjct: 208 SSFASSHEVWKYICELGISKVELSMEDIETILNTLIYDGKVEMTIIAAKEGTVGSVDGHM 267
Query: 180 VCYKNVSKGGGGGEPKTGSLASIPCGVCPQINICKPDGVISPKTCVYYTKWLDF 233
Y+ V+ P TG + + PCG+CP C G ISP C+Y T+WL+F
Sbjct: 268 KLYRAVNPIL----PPTGVVRA-PCGLCPVFEDCHEGGEISPSNCIYMTEWLEF 316
>gi|26325236|dbj|BAC26372.1| unnamed protein product [Mus musculus]
Length = 316
Score = 121 bits (304), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 72/234 (30%), Positives = 124/234 (52%), Gaps = 25/234 (10%)
Query: 18 DHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVVNIHSKGK 77
+ E+L+Y +I + GIW+RD++ + NLP + K +K+L++K LIK V ++ + K
Sbjct: 90 NQEKLVYQIIEDAGNKGIWSRDIR--YKSNLPLTEINKILKNLESKKLIKAVKSVAASKK 147
Query: 78 KHLMAVEFEPSKEISGGAWYSEGSLDTEFIKVVKSQCLKQI-IKLKVATLEGISDSIKRS 136
K M +P + ++GGAWYS+ ++EF++V+ QC K + K + A + I+R+
Sbjct: 148 KVYMLYNLQPDRSVTGGAWYSDQDFESEFVEVLNQQCFKFLQSKAETARESKQNPVIQRN 207
Query: 137 GAF----------------KVDLTKQQIEEIVRALVLDNQI-MEVKSNGSGEFTNIPVGK 179
+F KV+L+ + IE I+ L+ D ++ M + + G ++
Sbjct: 208 SSFASSHEVWKYICELGISKVELSMEDIETILNTLIYDGKVEMTIIAAKEGTVGSVDGHM 267
Query: 180 VCYKNVSKGGGGGEPKTGSLASIPCGVCPQINICKPDGVISPKTCVYYTKWLDF 233
Y+ V+ P TG + + PCG+CP C G ISP C+Y T+WL+F
Sbjct: 268 KLYRAVNPIL----PPTGVVRA-PCGLCPVFEDCHEGGEISPSNCIYMTEWLEF 316
>gi|351715903|gb|EHB18822.1| DNA-directed RNA polymerase III subunit RPC6 [Heterocephalus
glaber]
Length = 316
Score = 121 bits (303), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 73/234 (31%), Positives = 124/234 (52%), Gaps = 25/234 (10%)
Query: 18 DHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVVNIHSKGK 77
+ E+L+Y +I + GIW+RD++ + NLP + K +K+L++K LIK V ++ + K
Sbjct: 90 NQEKLVYQIIEDAGNKGIWSRDIR--YKSNLPLTEINKILKNLESKKLIKAVKSVAASKK 147
Query: 78 KHLMAVEFEPSKEISGGAWYSEGSLDTEFIKVVKSQCLKQI-IKLKVATLEGISDSIKRS 136
K M +P + ++GGAWYS+ ++EF++V+ QC K + K + A + I+R+
Sbjct: 148 KVYMLYNLQPDRSVTGGAWYSDQDFESEFVEVLNQQCFKFLQSKAETARESKQNPVIQRN 207
Query: 137 GAF----------------KVDLTKQQIEEIVRALVLDNQI-MEVKSNGSGEFTNIPVGK 179
+F KV+L+ + IE I+ L+ D ++ M + + G ++
Sbjct: 208 SSFASSHEVWKYICELGISKVELSMEDIETILNTLIYDGKVEMTIIAAKEGTVGSVDGHM 267
Query: 180 VCYKNVSKGGGGGEPKTGSLASIPCGVCPQINICKPDGVISPKTCVYYTKWLDF 233
Y+ VS TG + S PCG+CP + C G ISP C+Y T+WL+F
Sbjct: 268 KLYRAVSPIIA----PTGLVRS-PCGLCPVFDDCHEGGEISPSNCIYMTEWLEF 316
>gi|327270311|ref|XP_003219933.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC6-like
[Anolis carolinensis]
Length = 310
Score = 121 bits (303), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 77/244 (31%), Positives = 120/244 (49%), Gaps = 45/244 (18%)
Query: 18 DHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVVNIHSKGK 77
+ E+L+Y +I + GIWTRD++ + NLP + K +K+L++K LIK V ++ + K
Sbjct: 84 NQEKLVYQIIEDAGNKGIWTRDIR--YKSNLPLTEINKILKNLESKKLIKAVKSVAASKK 141
Query: 78 KHLMAVEFEPSKEISGGAWYSEGSLDTEFIKVVKSQCLKQI-IKLKVATLEGISDSIKRS 136
K M +P + ++GGAWYS+ ++EF++V+ QC K + K + A + I+R+
Sbjct: 142 KVYMLYNLQPDRSVTGGAWYSDQDFESEFVEVLNQQCFKFLQTKAEAARDSKQNPMIQRN 201
Query: 137 GAF----------------KVDLTKQQIEEIVRALVLDNQIMEVKSNGSGEFTNIPVGKV 180
+F KV+L+ + IE I+ L+ D G E T I
Sbjct: 202 SSFASSHEVWKYISELGVSKVELSMEDIETILNTLIYD---------GKVEMTIIAA--- 249
Query: 181 CYKNVSKGGGGGEPK-----------TGSLASIPCGVCPQINICKPDGVISPKTCVYYTK 229
K + G G K TG L +PCG+CP + C G ISP C+Y T+
Sbjct: 250 --KEATAGSVDGRMKLYRAVNPIIQPTG-LIRVPCGLCPVFDDCHEGGEISPSNCIYMTE 306
Query: 230 WLDF 233
WL F
Sbjct: 307 WLQF 310
>gi|350594676|ref|XP_003483946.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC6 isoform 1
[Sus scrofa]
Length = 316
Score = 121 bits (303), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 72/234 (30%), Positives = 123/234 (52%), Gaps = 25/234 (10%)
Query: 18 DHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVVNIHSKGK 77
+ E+L+Y +I + GIW+RD++ + NLP + K +K+L++K LIK V ++ + K
Sbjct: 90 NQEKLVYQIIEDAGNKGIWSRDIR--YKSNLPLTEINKILKNLESKKLIKAVKSVAASKK 147
Query: 78 KHLMAVEFEPSKEISGGAWYSEGSLDTEFIKVVKSQCLKQI-IKLKVATLEGISDSIKRS 136
K M +P + ++GGAWYS+ ++EF++V+ QC K + K + A + I+R+
Sbjct: 148 KVYMLYNLQPDRSVTGGAWYSDQDFESEFVEVLNQQCFKFLQTKAETARESKQNPVIQRN 207
Query: 137 GAF----------------KVDLTKQQIEEIVRALVLDNQI-MEVKSNGSGEFTNIPVGK 179
+F KV+L+ + IE I+ L+ D ++ M + + G ++
Sbjct: 208 SSFASSHEVWKYICELGISKVELSMEDIETILNTLIYDGKVEMTIIAAKEGTVGSVDGHM 267
Query: 180 VCYKNVSKGGGGGEPKTGSLASIPCGVCPQINICKPDGVISPKTCVYYTKWLDF 233
Y+ V+ TG L PCG+CP + C G ISP C+Y T+WL+F
Sbjct: 268 KLYRAVNPIIS----PTG-LVRAPCGLCPVFDDCHEGGEISPSNCIYMTEWLEF 316
>gi|294948682|ref|XP_002785842.1| DNA-directed RNA polymerases iii 39 Kd polypeptide, putative
[Perkinsus marinus ATCC 50983]
gi|239899950|gb|EER17638.1| DNA-directed RNA polymerases iii 39 Kd polypeptide, putative
[Perkinsus marinus ATCC 50983]
Length = 316
Score = 121 bits (303), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 73/218 (33%), Positives = 115/218 (52%), Gaps = 14/218 (6%)
Query: 21 RLIYDVIRSKQDMGIWTRDMKRELRVNLPDNI----VTKSIKSLQNKSLIKEVVNIHSKG 76
R+IY +I+ GIW +D+ R N+ I VTK L+ + LIK+V ++ K
Sbjct: 80 RMIYKLIKMAGTQGIWNKDLA--TRANMEHRIASGSVTKICSQLEARRLIKKVTSVQHKS 137
Query: 77 KKHLMAVEFEPSKEISGGAWYSEGSLDTEFIKVVKSQCLKQII-KLKVATLEGISDSIKR 135
+K M E EPSKE+SGG WY +G LDT+ I+ ++ CL I + + T E + +
Sbjct: 138 RKVWMLYELEPSKEVSGGNWYRDGRLDTDLIERLRQCCLDYITNQNRAVTCEDVHRYVVS 197
Query: 136 SGAFKVDLTKQQIEEIVRALVLDNQIMEVKSNGSGEFTNIPVGKVCYKNVSKGGGGGEPK 195
G + + ++I +++R+L LD IM V S +GE + K CY VS+ G
Sbjct: 198 QGVSHITHSVEEIGDVLRSLELDRVIMVVPST-AGE----SIAKQCY--VSRPANLGLDY 250
Query: 196 TGSLASIPCGVCPQINICKPDGVISPKTCVYYTKWLDF 233
+ +PC CP + C G ++P+ C+Y +KWL+
Sbjct: 251 ITRIVDVPCIACPVSSECVVGGRVNPEECLYLSKWLNL 288
>gi|387915870|gb|AFK11544.1| DNA-directed RNA polymerase III subunit RPC6 [Callorhinchus milii]
Length = 314
Score = 120 bits (302), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 74/233 (31%), Positives = 122/233 (52%), Gaps = 23/233 (9%)
Query: 18 DHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVVNIHSKGK 77
+ E+L+Y +I + GIW+RD++ + NLP + K +K++++K LIK V ++ + K
Sbjct: 88 NQEKLVYQIIEDAGNKGIWSRDIR--YKSNLPLTEINKILKNMESKKLIKAVKSVAASKK 145
Query: 78 KHLMAVEFEPSKEISGGAWYSEGSLDTEFIKVVKSQCLKQII-KLKVATLEGISDSIKRS 136
K M +P + ++GGAWYS+ ++EF++V+ QC K + K +VA S ++R+
Sbjct: 146 KVYMLYNLQPDRSVTGGAWYSDQDFESEFVEVLNQQCFKFLQNKAEVARESKQSPMVQRN 205
Query: 137 GAF----------------KVDLTKQQIEEIVRALVLDNQIMEVKSNGSGEFTNIPVGKV 180
+F KV+L+ + IE I+ L+ D ++ EV + E T VG V
Sbjct: 206 SSFASSHEVWKYICELGISKVELSMEDIETILNTLIYDGKV-EVTIIAAKEGT---VGSV 261
Query: 181 CYKNVSKGGGGGEPKTGSLASIPCGVCPQINICKPDGVISPKTCVYYTKWLDF 233
+ + L PCG+CP + C G ISP TC+Y T+WL F
Sbjct: 262 DGQMKLFRAVNPIIQPTGLVRTPCGMCPVFDDCHEGGDISPATCIYMTEWLQF 314
>gi|350594678|ref|XP_003483947.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC6 isoform 2
[Sus scrofa]
Length = 323
Score = 120 bits (302), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 72/234 (30%), Positives = 123/234 (52%), Gaps = 25/234 (10%)
Query: 18 DHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVVNIHSKGK 77
+ E+L+Y +I + GIW+RD++ + NLP + K +K+L++K LIK V ++ + K
Sbjct: 97 NQEKLVYQIIEDAGNKGIWSRDIR--YKSNLPLTEINKILKNLESKKLIKAVKSVAASKK 154
Query: 78 KHLMAVEFEPSKEISGGAWYSEGSLDTEFIKVVKSQCLKQI-IKLKVATLEGISDSIKRS 136
K M +P + ++GGAWYS+ ++EF++V+ QC K + K + A + I+R+
Sbjct: 155 KVYMLYNLQPDRSVTGGAWYSDQDFESEFVEVLNQQCFKFLQTKAETARESKQNPVIQRN 214
Query: 137 GAF----------------KVDLTKQQIEEIVRALVLDNQI-MEVKSNGSGEFTNIPVGK 179
+F KV+L+ + IE I+ L+ D ++ M + + G ++
Sbjct: 215 SSFASSHEVWKYICELGISKVELSMEDIETILNTLIYDGKVEMTIIAAKEGTVGSVDGHM 274
Query: 180 VCYKNVSKGGGGGEPKTGSLASIPCGVCPQINICKPDGVISPKTCVYYTKWLDF 233
Y+ V+ TG L PCG+CP + C G ISP C+Y T+WL+F
Sbjct: 275 KLYRAVNPIIS----PTG-LVRAPCGLCPVFDDCHEGGEISPSNCIYMTEWLEF 323
>gi|198424749|ref|XP_002126762.1| PREDICTED: similar to Polr3f protein [Ciona intestinalis]
Length = 310
Score = 120 bits (302), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 71/249 (28%), Positives = 126/249 (50%), Gaps = 34/249 (13%)
Query: 5 KRPDSNAPSDSLTDHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKS 64
K P + + + E+L+Y +I S + GIWTR+++ + NL V K +K+L++K
Sbjct: 76 KTPSAVGSISGVDNQEKLVYQIIESAGNKGIWTREIR--YKCNLMLTEVNKILKNLESKK 133
Query: 65 LIKEVVNIHSKGKKHLMAVEFEPSKEISGGAWYSEGSLDTEFIKVVKSQCLKQIIK---- 120
+IK V ++ + +K M +P + ++GGAWYS+ ++EF++V+ QC K + +
Sbjct: 134 IIKAVKSVAAAKRKVYMLYNLQPDRSVTGGAWYSDQDFESEFVEVLNQQCFKFLQQKCEN 193
Query: 121 --------------LKVATLEGISDSIKRSGAFKVDLTKQQIEEIVRALVLDNQIMEVKS 166
A+ E + + I + G KV L+ + IE I+ L+ D ++ +
Sbjct: 194 AEKETTLSPTATNASSFASSEEVLEFISKLGISKVTLSPEDIETILNTLIYDGKVQQ--- 250
Query: 167 NGSGEFTNIPVGKVCYKNVSKGGGGGEP--KTGSLASIPCGVCPQINICKPDGVISPKTC 224
T +PV K + K +P +T A PC +CP N C+P G ISP+ C
Sbjct: 251 ------TVVPVANGESKKLFK---ALKPLIETTDFARTPCSLCPVFNECQPGGEISPENC 301
Query: 225 VYYTKWLDF 233
+Y +W+++
Sbjct: 302 LYMDEWMEY 310
>gi|294889371|ref|XP_002772779.1| DNA-directed RNA polymerases iii 39 Kd polypeptide, putative
[Perkinsus marinus ATCC 50983]
gi|239877329|gb|EER04595.1| DNA-directed RNA polymerases iii 39 Kd polypeptide, putative
[Perkinsus marinus ATCC 50983]
Length = 438
Score = 120 bits (302), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 73/218 (33%), Positives = 115/218 (52%), Gaps = 14/218 (6%)
Query: 21 RLIYDVIRSKQDMGIWTRDMKRELRVNLPDNI----VTKSIKSLQNKSLIKEVVNIHSKG 76
R+IY +I+ GIW +D+ R N+ I VTK L+ + LIK+V ++ K
Sbjct: 80 RMIYKLIKMAGTQGIWNKDLA--TRANMEHRIASGSVTKICSQLEARRLIKKVTSVQHKS 137
Query: 77 KKHLMAVEFEPSKEISGGAWYSEGSLDTEFIKVVKSQCLKQII-KLKVATLEGISDSIKR 135
+K M E EPSKE+SGG WY +G LDT+ I+ ++ CL I + + T E + +
Sbjct: 138 RKVWMLYELEPSKEVSGGNWYRDGRLDTDLIERLRQCCLDYITNQNRAVTCEDVHRYVVS 197
Query: 136 SGAFKVDLTKQQIEEIVRALVLDNQIMEVKSNGSGEFTNIPVGKVCYKNVSKGGGGGEPK 195
G + + ++I +++R+L LD IM V S +GE + K CY VS+ G
Sbjct: 198 QGVSHITHSVEEIGDVLRSLELDRVIMVVPST-AGE----SIAKQCY--VSRPANLGLDY 250
Query: 196 TGSLASIPCGVCPQINICKPDGVISPKTCVYYTKWLDF 233
+ +PC CP + C G ++P+ C+Y +KWL+
Sbjct: 251 ITRIVDVPCIACPVSSECVVGGRVNPEECLYLSKWLNL 288
>gi|345329112|ref|XP_001515545.2| PREDICTED: DNA-directed RNA polymerase III subunit RPC6
[Ornithorhynchus anatinus]
Length = 316
Score = 120 bits (301), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 71/236 (30%), Positives = 122/236 (51%), Gaps = 29/236 (12%)
Query: 18 DHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVVNIHSKGK 77
+ E+L+Y +I + GIW+RD++ + NLP + K +K+L++K LIK V ++ + K
Sbjct: 90 NQEKLVYQIIEDAGNKGIWSRDIR--YKSNLPLTEINKILKNLESKKLIKAVKSVAASKK 147
Query: 78 KHLMAVEFEPSKEISGGAWYSEGSLDTEFIKVVKSQCLKQIIKLKVATLEGISDS-IKRS 136
K M +P + ++GGAWYS+ ++EF++V+ QC K + A E + I+R+
Sbjct: 148 KVYMLYNLQPDRSVTGGAWYSDQDFESEFVEVLNQQCFKFLQSKAEAARESKQNPMIQRN 207
Query: 137 GAF----------------KVDLTKQQIEEIVRALVLDNQI-MEVKSNGSGEFTNIPVGK 179
+F KV+L+ + IE I+ L+ D ++ M + + G ++
Sbjct: 208 SSFASSHEVWKYICELGISKVELSMEDIETILNTLIYDGKVEMTIIAAKEGTVGSVDGHM 267
Query: 180 VCYKNVSKGGGGGEP--KTGSLASIPCGVCPQINICKPDGVISPKTCVYYTKWLDF 233
Y+ V+ P + L PCG+CP + C G ISP C+Y T+WL+F
Sbjct: 268 KLYRAVN-------PIIQPTGLVRAPCGLCPVFDDCHEGGEISPSNCIYITEWLEF 316
>gi|157138209|ref|XP_001664177.1| DNA-directed RNA polymerase III, 34kD-subunit, putative [Aedes
aegypti]
gi|108880662|gb|EAT44887.1| AAEL003786-PA [Aedes aegypti]
Length = 328
Score = 120 bits (301), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 74/241 (30%), Positives = 115/241 (47%), Gaps = 34/241 (14%)
Query: 9 SNAPSDSLTDHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKE 68
S AP D + + E++IY++I + GIW RD++ ++ NL + K +K L+NK LIK
Sbjct: 105 STAPKD-IDNEEKIIYNIIEEGGNKGIWIRDIR--VKSNLIMTQLNKVLKQLENKKLIKA 161
Query: 69 VVNIHSKGKKHLMAVEFEPSKEISGGAWYSEGSLDTEFIKVVKSQCLK------------ 116
V ++++ KK M EP + I+GGAWY + + EF+ V+ QCL+
Sbjct: 162 VKSVNASKKKVYMLYNLEPDRSITGGAWYQDQDFEAEFVDVLNQQCLRFLRMKRESAKEC 221
Query: 117 -----QIIKLKVATLEGISDSIKRSGAFKVDLTKQQIEEIVRALVLDNQIMEVKSNGSGE 171
+ KL ++ + I G K+ L + +E I++ +V D G E
Sbjct: 222 RDGPLAVQKLSYCSVGDVHKFISDLGISKISLDEDDLETILKTVVYD---------GKAE 272
Query: 172 FTNIPVGKVCYKNVSKGGGGGEPKTGSLASIPCGVCPQINICKPDGVISPKTCVYYTKWL 231
GK YK + + L +PCG+CP I C G I+PK C Y +WL
Sbjct: 273 SIPTAEGKYLYKAIE-----APLSSPGLVQMPCGICPVIRNCSDCGAITPKLCSYINEWL 327
Query: 232 D 232
D
Sbjct: 328 D 328
>gi|443693096|gb|ELT94539.1| hypothetical protein CAPTEDRAFT_19562 [Capitella teleta]
Length = 314
Score = 120 bits (300), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 81/250 (32%), Positives = 124/250 (49%), Gaps = 31/250 (12%)
Query: 3 KRKRPDSNAPSDSLTDHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQN 62
K K PD + E+++Y +I + GIW RD++ + NLP V K +KSL++
Sbjct: 75 KLKDPDVGNKTKGGDTQEQIMYQIIEDAGNKGIWIRDIRT--KSNLPMTAVNKLVKSLES 132
Query: 63 KSLIKEVVNIHSKGKKHLMAVEFEPSKEISGGAWYSEGSLDTEFIKVVKSQC---LKQII 119
K +IK V ++ + KK M EP + ++GGAWYS+ ++EF++V+ QC L+Q +
Sbjct: 133 KKVIKAVKSVSASKKKVYMLASLEPDRSVTGGAWYSDQDFESEFVEVLNQQCFNYLEQRV 192
Query: 120 KL-----------KVATLEGISDS---IKRSGAFKVDLTKQQIEEIVRALVLDNQIMEVK 165
KL + A+ SD I G KV L + IE I+ L+ D ++ +
Sbjct: 193 KLARESNSEPMTQRNASFASSSDVWKFITELGISKVSLAVEDIETILDTLIYDGKVEKSI 252
Query: 166 SNGSGEFTNIPVGKVCYKNVSKGGGGGEP---KTGSLASIPCGVCPQINICKPDGVISPK 222
G G K+ Y+ ++ P TG + S PCGVCP C G++SP
Sbjct: 253 VAGGGAADGESQVKL-YRAIT-------PVIINTGLMRS-PCGVCPVFRECHEAGIVSPS 303
Query: 223 TCVYYTKWLD 232
TC+Y WLD
Sbjct: 304 TCLYMKDWLD 313
>gi|170064626|ref|XP_001867603.1| DNA-directed RNA polymerase III subunit F [Culex quinquefasciatus]
gi|167881952|gb|EDS45335.1| DNA-directed RNA polymerase III subunit F [Culex quinquefasciatus]
Length = 305
Score = 119 bits (297), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 75/241 (31%), Positives = 114/241 (47%), Gaps = 34/241 (14%)
Query: 9 SNAPSDSLTDHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKE 68
S AP D + + E++IY +I + GIW RD++ ++ NL + K +K L+NK LIK
Sbjct: 82 STAPKD-IDNEEKIIYAIIEEGGNRGIWIRDIR--VKSNLIMTQLNKVLKQLENKKLIKA 138
Query: 69 VVNIHSKGKKHLMAVEFEPSKEISGGAWYSEGSLDTEFIKVVKSQCLK------------ 116
V ++++ KK M EP + I+GGAWY + + EF+ V+ QCL+
Sbjct: 139 VKSVNASKKKVYMLYNLEPDRSITGGAWYQDQDFEAEFVDVLNQQCLRFLRMKKEMAKEC 198
Query: 117 -----QIIKLKVATLEGISDSIKRSGAFKVDLTKQQIEEIVRALVLDNQIMEVKSNGSGE 171
+ KL ++ + I G K+ L + +E I++ +V D G E
Sbjct: 199 RDGPLAVQKLAYCSVADVHKFISDLGISKISLDEDDLETILKTVVYD---------GKAE 249
Query: 172 FTNIPVGKVCYKNVSKGGGGGEPKTGSLASIPCGVCPQINICKPDGVISPKTCVYYTKWL 231
GK YK V + L +PCG+CP I C G I+PK C Y +WL
Sbjct: 250 SMPTVEGKNLYKAVE-----APLASPGLVQMPCGICPVIKNCSDFGEITPKLCSYINEWL 304
Query: 232 D 232
D
Sbjct: 305 D 305
>gi|440800559|gb|ELR21595.1| DNA-directed RNA polymerase III 34kD-subunit family protein,
putative [Acanthamoeba castellanii str. Neff]
Length = 230
Score = 118 bits (296), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 68/218 (31%), Positives = 112/218 (51%), Gaps = 39/218 (17%)
Query: 16 LTDHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVVNIHSK 75
LT ERL+Y +I + +MG+WTRDMK R NL + K +K+LQN+ LIK V +I +
Sbjct: 48 LTQEERLVYSLIEKEGNMGLWTRDMK--FRSNLQQTTINKILKTLQNRKLIKAVKSIAGR 105
Query: 76 GKKHLMAVEFEPSKEISGGAWYS-EGSLDTEFIKVVKSQCLKQIIKLKVATLEGISDSIK 134
+K M + EPS ++ G A+Y+ +G D+EF+ V+ C + I + TLE ++ ++
Sbjct: 106 NRKVYMLYDLEPSVKVKGNAFYTPDGVFDSEFVNVLNKHCYRYIEQEGSVTLESMASFVR 165
Query: 135 RSGAFKVDLTKQQIEEIVRALVLDNQIMEVKSNGSGEFTNIPVGKVCYKNVSKGGGGGEP 194
SG V+L + +++I+ L+ D ++ +VK G +IPV
Sbjct: 166 NSGMSNVELKDEDVQQILDTLIYDGKVDKVKDAG----ISIPV----------------- 204
Query: 195 KTGSLASIPCGVCPQINICKPDGVISPKTCVYYTKWLD 232
+C+ +G ++P C Y T+WLD
Sbjct: 205 ---------------FYMCEDEGDVTPAKCPYLTQWLD 227
>gi|325190908|emb|CCA25394.1| DNAdirected RNA polymerase III subunit RPC6 putative [Albugo
laibachii Nc14]
gi|325190983|emb|CCA25467.1| DNAdirected RNA polymerase III subunit RPC6 putative [Albugo
laibachii Nc14]
Length = 312
Score = 117 bits (294), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 74/233 (31%), Positives = 119/233 (51%), Gaps = 29/233 (12%)
Query: 19 HERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVVNIHSKGK- 77
+R++ I + GIWTRD+K ++ N+ +V K+++ L+++ LIK V +I SK K
Sbjct: 86 EQRVVLSEIERAGNKGIWTRDIK--MQSNIAQQVVVKTLRLLESRQLIKSVKSISSKNKI 143
Query: 78 -----------KHLMAVEFE------PSKEISGGAWYSEGSLDTEFIKVVKSQCLKQIIK 120
KH + V + PS E++GG WY+E D FI + + + I
Sbjct: 144 LYMLFDLGTSCKHNLEVFIDITFLSVPSTEVTGGPWYNEQEFDHVFINTLCTFVYEVIKA 203
Query: 121 LKVATLEGISDSIKRSGAFKVDLTKQQIEEIVRALVLDNQIMEVKSNGSGEFTNIPVGKV 180
++TL+ I+D + SG KV L ++I I++ L+ D +I +V+S N +V
Sbjct: 204 SGMSTLKAITDKVHASGISKVALGSEEIRSILQTLMYDGRIEQVRSVSLKPMNN----EV 259
Query: 181 CYKNVSKGGGGGEPKTGSLASIPCGVCPQINICKPDGVISPKTCVYYTKWLDF 233
YK + L+ PCG+CP C+ VISP++C+Y TKWLD
Sbjct: 260 NYKVTQQI-----TTMNYLSETPCGICPVFEQCREGNVISPRSCLYITKWLDL 307
>gi|449666947|ref|XP_002169336.2| PREDICTED: DNA-directed RNA polymerase III subunit RPC6-like [Hydra
magnipapillata]
Length = 517
Score = 117 bits (292), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 77/217 (35%), Positives = 114/217 (52%), Gaps = 24/217 (11%)
Query: 34 GIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVVNIHSKGKKHLMAVEFEPSKEISG 93
GIW RD++ + NLP V K +K+L++K LIK V ++ KK M P ++G
Sbjct: 307 GIWIRDIR--FKCNLPMTQVNKVLKNLESKKLIKSVTSVGVSEKKVYMLYNMVPDTSVTG 364
Query: 94 GAWYSEGSLDTEFIKVVKSQCLKQII-KLKVATLEGISDSIKRSGAF------------- 139
GAWYS+ + EF+ ++ QC K ++ KL+ A I ++R+ ++
Sbjct: 365 GAWYSDQDFEAEFVDILNQQCHKFLLQKLQQAQEMKIDPLLQRNRSYASSHEVWKYISDL 424
Query: 140 ---KVDLTKQQIEEIVRALVLDNQI-MEVKSNGSGEFTNIPVGKVCYKNVSKGGGGGEPK 195
KV LT + IE I+ L+ D M + S+ S + NI G V K + + P
Sbjct: 425 GISKVSLTIKDIETILSTLLYDGMAEMIIVSDSSMD--NIESG-VIQKKLYRAVKPLLPV 481
Query: 196 TGSLASIPCGVCPQINICKPDGVISPKTCVYYTKWLD 232
TG L IPCGVCP + C P G++SP+TCVY +WLD
Sbjct: 482 TG-LMRIPCGVCPVVKNCYPGGLVSPQTCVYIKEWLD 517
>gi|118792885|ref|XP_320558.3| AGAP011973-PA [Anopheles gambiae str. PEST]
gi|116117113|gb|EAA00356.3| AGAP011973-PA [Anopheles gambiae str. PEST]
Length = 295
Score = 115 bits (288), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 70/241 (29%), Positives = 115/241 (47%), Gaps = 34/241 (14%)
Query: 9 SNAPSDSLTDHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKE 68
S+AP D + + ER+IY+++ + GIW RD++ ++ NL + K +K L+NK LIK
Sbjct: 72 SSAPKD-IDNEERVIYNIVEEGGNKGIWIRDIR--VKSNLVMTQLNKVLKQLENKKLIKA 128
Query: 69 VVNIHSKGKKHLMAVEFEPSKEISGGAWYSEGSLDTEFIKVVKSQCLK------------ 116
V ++++ KK M EP + I+GGAWY + + EF+ V+ QCL+
Sbjct: 129 VKSVNASKKKVYMLYNLEPDRSITGGAWYQDQDFEAEFVDVLNQQCLRFLRQKREVAKGS 188
Query: 117 -----QIIKLKVATLEGISDSIKRSGAFKVDLTKQQIEEIVRALVLDNQIMEVKSNGSGE 171
+ KL ++ + I G K+ L + +E I++ +V D G E
Sbjct: 189 GEGPLAVQKLSECSVADVHRFISDLGISKISLDEDDLETILKTVVYD---------GKAE 239
Query: 172 FTNIPVGKVCYKNVSKGGGGGEPKTGSLASIPCGVCPQINICKPDGVISPKTCVYYTKWL 231
G Y+ + L +PCG+CP + C G I+P+ C Y ++WL
Sbjct: 240 RVAQISGGFLYRAIETPIAA-----PGLVQMPCGICPVVKNCADCGEITPQLCTYISEWL 294
Query: 232 D 232
D
Sbjct: 295 D 295
>gi|357612377|gb|EHJ67947.1| putative DNA-directed RNA polymerase III 39 kDa polypeptide [Danaus
plexippus]
Length = 269
Score = 115 bits (287), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 72/232 (31%), Positives = 114/232 (49%), Gaps = 33/232 (14%)
Query: 18 DHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVVNIHSKGK 77
+ E+++Y++I + GIW RD++ +R NL + +TK +KSL+ K +IK V +++ K
Sbjct: 53 NEEKVVYNLIEEAGNKGIWIRDIR--IRSNLANTQLTKVLKSLEGKKVIKAVKCVNASKK 110
Query: 78 KHLMAVEFEPSKEISGGAWYSEGSLDTEFIKVVKSQCLK----QIIKLK----------- 122
K M EP + +SGGAWY + ++EF+ ++ QCL+ + K+K
Sbjct: 111 KVYMLFNLEPDRSVSGGAWYQDQDFESEFVDILNRQCLRFLQQRADKIKNNPRGPIVGRT 170
Query: 123 --VATLEGISDSIKRSGAFKVDLTKQQIEEIVRALVLDNQIMEVKSNGSGEFTNIPVGKV 180
AT + I G KV L + + I+ LV D G E P G
Sbjct: 171 QSYATAAEVQKYITDLGISKVKLEVEDVITILNTLVYD---------GKAESNVYPDGNR 221
Query: 181 CYKNVSKGGGGGEPKTGSLASIPCGVCPQINICKPDGVISPKTCVYYTKWLD 232
Y+ + P G L +PCGVCP I+ C G+I+P+ C Y +WL+
Sbjct: 222 VYRAIE----SLLPPPG-LVQVPCGVCPLIHKCNSTGLITPQDCKYMDEWLE 268
>gi|427788023|gb|JAA59463.1| Putative dna-directed rna polymerase iii subunit rpc6
[Rhipicephalus pulchellus]
Length = 335
Score = 114 bits (286), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 72/252 (28%), Positives = 124/252 (49%), Gaps = 23/252 (9%)
Query: 1 MSKRKRPDSNAPSDSLTDHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSL 60
+ + K D+++ E+++Y ++ + GIW RD++ ++ L + K +K+L
Sbjct: 72 LYRLKNTDADSKCKGSDREEKVVYKIVEEAGNKGIWIRDIR--IKSGLVLTALNKILKNL 129
Query: 61 QNKSLIKEVVNIHSKGKKHLMAVEFEPSKEISGGAWYSEGSLDTEFIKVVKSQCLKQIIK 120
++K LIK V ++ + KK M EP + ++GGAWYSE ++EF++V+ QC + +IK
Sbjct: 130 ESKKLIKAVKSVSASKKKVYMLFNLEPDRSVTGGAWYSEQEFESEFVEVLNQQCHRFLIK 189
Query: 121 ------------------LKVATLEGISDSIKRSGAFKVDLTKQQIEEIVRALVLDNQIM 162
A+ + + + IK+ G KV L+ + IE I+ L+ D ++
Sbjct: 190 KLTVAKDTSAGDPLLEKNASFASSKEVWEFIKKLGISKVQLSVEDIEMILSTLIYDGKVE 249
Query: 163 EVKSNG-SGEFTNIPVGKVCYKNVSKGGGGGEPKTGS--LASIPCGVCPQINICKPDGVI 219
+ G ++ +++ EP S L IPCG CP IN C G +
Sbjct: 250 KTVVCGSGSSLSSSSRSASSSEDLVNLYRAVEPLIDSTGLMRIPCGTCPVINNCYEGGAV 309
Query: 220 SPKTCVYYTKWL 231
SP TC Y+ KWL
Sbjct: 310 SPSTCQYFKKWL 321
>gi|452825669|gb|EME32664.1| DNA-directed RNA polymerase III subunit C34 [Galdieria sulphuraria]
Length = 288
Score = 113 bits (283), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 68/216 (31%), Positives = 106/216 (49%), Gaps = 13/216 (6%)
Query: 16 LTDHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVVNIHSK 75
L+ ERL+Y + + GIWTRD++ R L +TK +K+L+ K L+K ++ SK
Sbjct: 79 LSTEERLVYSHVEEAGNKGIWTRDLRNISR--LQQTQLTKILKNLELKKLVKPFKSVKSK 136
Query: 76 GKKHLMAVEFEPSKEISGGAWYSEGSLDTEFIKVVKSQCLKQIIKLKVA-TLEGISDSIK 134
KK M + EPS +++GG WY D EF V+ Q L+ I +E +++ I
Sbjct: 137 NKKLYMLFDLEPSIDVTGGPWYYNQEFDAEFFDVLYQQSLRFIRGSSTGVAVEEVANYIT 196
Query: 135 RSGAFKVDLTKQQIEEIVRALVLDNQIMEVKSNGSGEFTNIPVGKVCYKNVSKGGGGGEP 194
G K L + E +++ ++ D ++E G+ + V + C+
Sbjct: 197 SLGISKEKLEIKDFESLLQTMIYDG-VIERICKGTDLEKSTTVYRYCHHT---------S 246
Query: 195 KTGSLASIPCGVCPQINICKPDGVISPKTCVYYTKW 230
+L +PCG+CP C DGVISP CVY KW
Sbjct: 247 PFATLGEVPCGICPVYKSCSIDGVISPVNCVYLRKW 282
>gi|260831248|ref|XP_002610571.1| hypothetical protein BRAFLDRAFT_117854 [Branchiostoma floridae]
gi|229295938|gb|EEN66581.1| hypothetical protein BRAFLDRAFT_117854 [Branchiostoma floridae]
Length = 317
Score = 113 bits (282), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 69/236 (29%), Positives = 112/236 (47%), Gaps = 31/236 (13%)
Query: 18 DHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVVNIHSKGK 77
+ E+L+Y +I + GIW RD++ R N+ + K +++L++K LIK V ++ + K
Sbjct: 93 NQEKLVYQIITDAGNKGIWIRDIR--YRCNIMITQLNKILRNLESKKLIKSVKSVAASKK 150
Query: 78 KHLMAVEFEPSKEISGGAWYSEGSLDTEFIKVVKSQCLKQIIKLKVATLEG--------- 128
K M EP + ++GGAW+S+ ++EF++V+ QC K + + E
Sbjct: 151 KVYMLFNLEPDQSVTGGAWFSDQDFESEFVEVLNQQCFKFLQQKATTAKEAKQGPIAQRN 210
Query: 129 --------ISDSIKRSGAFKVDLTKQQIEEIVRALVLDNQI-MEV--KSNGSGEFTNIPV 177
+ I G KV L+ IE I+ L+ D ++ M V + S E + +
Sbjct: 211 ASYASSKEVCKFITELGISKVQLSVADIETILNTLIYDGKVEMTVVASQSSSTEDSQTKL 270
Query: 178 GKVCYKNVSKGGGGGEPKTGSLASIPCGVCPQINICKPDGVISPKTCVYYTKWLDF 233
+ + G L IPCGVCP + C G +SP TCVY WL+F
Sbjct: 271 FRAVAPIMQPAG---------LMRIPCGVCPVFDRCHEGGAVSPSTCVYMKDWLEF 317
>gi|346468447|gb|AEO34068.1| hypothetical protein [Amblyomma maculatum]
Length = 333
Score = 113 bits (282), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 73/254 (28%), Positives = 120/254 (47%), Gaps = 23/254 (9%)
Query: 1 MSKRKRPDSNAPSDSLTDHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSL 60
+ + K D++ E+++Y ++ + GIW RD++ + + L + K +KSL
Sbjct: 72 LYRLKDSDADKKCKGSDREEKVVYKIVEEAGNKGIWIRDIRNKSGLVLTS--LNKILKSL 129
Query: 61 QNKSLIKEVVNIHSKGKKHLMAVEFEPSKEISGGAWYSEGSLDTEFIKVVKSQCLKQIIK 120
++K LIK V ++ + KK M EP + +SGGAWY++ ++EF++V+ QC + ++K
Sbjct: 130 ESKKLIKAVKSVSASKKKVYMLYNLEPDRSVSGGAWYNDQEFESEFVEVLNQQCHRFLLK 189
Query: 121 LKVATLEGISDS-----------------IKRSGAFKVDLTKQQIEEIVRALVLDNQIME 163
E SD IK+ G KV L+ + IE I+ L+ D + +
Sbjct: 190 KLTVAKETSSDPVLEKNASFASSKEVWEFIKKLGISKVQLSLEDIETILNTLIYDGKAEK 249
Query: 164 VKSNGSGEFTNIPVGKVCYKNVSKGGGGGEP--KTGSLASIPCGVCPQINICKPDGVISP 221
GS + + EP ++ L +PCG CP C GV+SP
Sbjct: 250 TVVCGSSVLGGSSKNSSSSEELLNLYRAIEPLVESAGLMRMPCGTCPVKQNCYEGGVVSP 309
Query: 222 KTCVYYTKWL--DF 233
TC Y+ KWL DF
Sbjct: 310 STCQYFKKWLSEDF 323
>gi|326473190|gb|EGD97199.1| DNA-directed RNA polymerase III subunit Rpc34 [Trichophyton
tonsurans CBS 112818]
Length = 348
Score = 112 bits (281), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 68/249 (27%), Positives = 116/249 (46%), Gaps = 34/249 (13%)
Query: 15 SLTDHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVVNIHS 74
+L ERL+Y+VI S GIWT+ +K R NL I+ + +KSL+ K+ +K V N+
Sbjct: 95 NLNGEERLVYNVIHSTGRNGIWTKIIK--TRTNLHQTIMNRCLKSLEAKNYVKSVRNVKY 152
Query: 75 KGKKHLMAVEFEPSKEISGGAWYSEGSLDTEFIKVVKS---------------------- 112
+K M +PS+EI+GGAW+++G LD +FI+ +
Sbjct: 153 PSRKIYMLSGLQPSEEITGGAWFTDGVLDADFIRGLSGWIEHWVSARSWNSPGAEDQPNR 212
Query: 113 ----QCLKQIIKLKVATLEGISDSIKRSGAFKVDLTKQQIEEIVRALVLDNQIMEVKSNG 168
C I K T I+ +I SG V + + I ++++ L D +++ ++
Sbjct: 213 DRSESCRPTIRKHSHPTTADITKAINGSGLTPVTMDEGSISQLLQMLCYDGRLVSLRDGA 272
Query: 169 SGEFTNIPVGKVCYKNVSKGGGGGEPKTGS------LASIPCGVCPQINICKPDGVISPK 222
+ P +++ G G GS + PCG CP ++C+P G ++ +
Sbjct: 273 AYRSVKKPNEISLQRDLGLQGPDGGANEGSALGSNGMTEAPCGQCPVFSLCRPGGPVNAE 332
Query: 223 TCVYYTKWL 231
C Y+ +WL
Sbjct: 333 NCEYFDEWL 341
>gi|281202585|gb|EFA76787.1| RNA polymerase III subunit [Polysphondylium pallidum PN500]
Length = 301
Score = 112 bits (279), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 77/234 (32%), Positives = 117/234 (50%), Gaps = 31/234 (13%)
Query: 16 LTDHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVVNIH-- 73
LT + L+Y +I D G WT++++ + NL VTK +K L+ ++LIK V I+
Sbjct: 76 LTADDMLVYQLIEQSNDKGTWTKEIRTQ--TNLQQTQVTKILKVLETRNLIKAVKTINMD 133
Query: 74 ----------SKGKKHLMAVEFEPSKEISGGAWYS-EGSLDTEFIKVVKSQCLKQIIKLK 122
+ KK MA EPS+E++GG+ Y SLD E I +K C I
Sbjct: 134 INIINDRKAIAGRKKVYMAYNVEPSREVTGGSLYGGSQSLDEELISAMKLSCNSFISNKG 193
Query: 123 VATLEGISDSIKRSGAFKVDLTKQQIEEIVRALVLDNQIMEVKSNGSGEFTNIPVGKVCY 182
A L I + +K++G + DLT + I+ +V +L+ D I E++ S +G V Y
Sbjct: 194 AADLTEIMNYMKKTG--EQDLTMEDIQTLVNSLIYDGLIEEMRDTRSTNMYGRRMG-VIY 250
Query: 183 KNVSKGGGGGEPKT----GSLASIPCGVCPQINICKPDGVISPKTCVYYTKWLD 232
K KT +PCGVCP ++C +G I+PK CVY+ +WL+
Sbjct: 251 K---------PTKTIIPENHFTKMPCGVCPVFSLCADEGEITPKKCVYFQQWLN 295
>gi|196007462|ref|XP_002113597.1| hypothetical protein TRIADDRAFT_26289 [Trichoplax adhaerens]
gi|190584001|gb|EDV24071.1| hypothetical protein TRIADDRAFT_26289 [Trichoplax adhaerens]
Length = 307
Score = 110 bits (275), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 71/234 (30%), Positives = 118/234 (50%), Gaps = 34/234 (14%)
Query: 19 HERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVVNIHSKGKK 78
E+L+Y VI + GIW+RD++ L+ NL + K +++L++K LIK V ++ + KK
Sbjct: 87 QEKLVYQVIGDAGNKGIWSRDIR--LKCNLQMTQLNKILRNLESKKLIKAVKSVTASKKK 144
Query: 79 HLMAVEFEPSKEISGGAWYSEGSLDTEFIKVVKSQCLKQIIKL----------------- 121
M +P ++GGAWYS+ ++EF++V+ QC + +++
Sbjct: 145 LYMLFNLDPDISVTGGAWYSDQDFESEFVEVLNQQCYRCLVQKVEESLNLCVNQPRISLN 204
Query: 122 -KVATLEGISDSIKRSGAFKVDLTKQQIEEIVRALVLDNQI-MEVKSNGSGEFTNIPVGK 179
A+ E + I KV LT IE I+ L+ D + M+++S+ G+ +
Sbjct: 205 NSFASSEEVWKIITNLKISKVTLTVTDIETILNTLIYDGKAEMKIESDPDGQEFKL---- 260
Query: 180 VCYKNVSK-GGGGGEPKTGSLASIPCGVCPQINICKPDGVISPKTCVYYTKWLD 232
Y+ V G KT PCG+CP I+ C +G ISP TC+Y +WL+
Sbjct: 261 --YRAVKPIIDASGLEKT------PCGICPVIDQCYENGAISPATCIYMKEWLE 306
>gi|242776068|ref|XP_002478769.1| DNA-directed RNA polymerase III subunit Rpc34, putative
[Talaromyces stipitatus ATCC 10500]
gi|218722388|gb|EED21806.1| DNA-directed RNA polymerase III subunit Rpc34, putative
[Talaromyces stipitatus ATCC 10500]
Length = 353
Score = 110 bits (275), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 75/272 (27%), Positives = 122/272 (44%), Gaps = 64/272 (23%)
Query: 15 SLTDHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVVNIHS 74
SL D E+L+Y+VI S GIW R + + R +L + K++KSL+ K+ IK +VN+
Sbjct: 85 SLNDTEKLVYNVIHSTGRTGIWIRQLGK--RTDLHKTSLDKALKSLEGKNFIKSIVNVKH 142
Query: 75 KGKKHLMAVEFEPSKEISGGAWYSEGSLDTEFIK------------------VVKS---- 112
GKK M E P+++++GGAW+++G LD EFI VVKS
Sbjct: 143 PGKKVYMLAELTPAEDVTGGAWFTDGVLDAEFIGVLSEFIEITVSKRTWYEIVVKSGTSG 202
Query: 113 ----------QCLKQIIKLK-----------VATLEGISDSIKRSGAFKVDLTKQQIEEI 151
+ +KQ K K T+ I+ + ++G V L + I ++
Sbjct: 203 SNKRQKLNTGEVVKQDEKEKRYIPYPADYKYYPTVGEITTEVNKTGITPVKLDEGSISQL 262
Query: 152 VRALVLDNQIMEVKSNGSGEFTNIP------------VGKVCYKNVSKGGGGGEPKTGSL 199
+R + D +++ + + + + P +V K G G +
Sbjct: 263 LRMMCFDGRLVSLNDHANYKAVRRPDEIIKARADADRTPEVQQKIFYNGKNG-------M 315
Query: 200 ASIPCGVCPQINICKPDGVISPKTCVYYTKWL 231
PCG CP IC+P G +SP+ C Y+ +W
Sbjct: 316 TEAPCGQCPVFKICQPGGTVSPENCEYFDEWF 347
>gi|321463825|gb|EFX74838.1| hypothetical protein DAPPUDRAFT_56706 [Daphnia pulex]
Length = 322
Score = 110 bits (274), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 67/233 (28%), Positives = 116/233 (49%), Gaps = 33/233 (14%)
Query: 19 HERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVVNIHSKGKK 78
E ++ +I + GI +D++ + +NL + K +K+L+ K+LIK V++I K
Sbjct: 104 EENVVMRIIEEAGNKGILNKDIRDQSGLNL--TTINKILKALEGKNLIKSVLSISVAKIK 161
Query: 79 HLMAVEFEPSKEISGGAWYSEGSLDTEFIKVVKSQCLKQI-IKLKVATLEGISDS-IKRS 136
M + +P + ++GG+WY++G ++E + +V QC + + K + A L+ + I R+
Sbjct: 162 VYMLFDLQPDRSVTGGSWYTDGEFESELVDIVNQQCYRMLQQKAEAAKLKAMDGPLIVRN 221
Query: 137 GAF----------------KVDLTKQQIEEIVRALVLDNQI-MEVKSNGSGEFTNIPVGK 179
+F K +LT ++IE I+ LV D +I M + S+G + +
Sbjct: 222 ASFLSSKEICQMISDMNIVKFNLTVEEIEAILETLVYDGKIEMRMVSDGDERIKTYRIVE 281
Query: 180 VCYKNVSKGGGGGEPKTGSLASIPCGVCPQINICKPDGVISPKTCVYYTKWLD 232
+ ++ IPCGVCP I IC G + PK CVYY +WLD
Sbjct: 282 TLL------------SSAAIVRIPCGVCPVIKICGTAGEVQPKNCVYYDQWLD 322
>gi|312377801|gb|EFR24541.1| hypothetical protein AND_10775 [Anopheles darlingi]
Length = 318
Score = 109 bits (273), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 79/264 (29%), Positives = 120/264 (45%), Gaps = 57/264 (21%)
Query: 9 SNAPSDSLTDHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKE 68
SN P D + ER+IY ++ + GIW RD++ ++ NL +TK +K L+NK LIK
Sbjct: 72 SNVPKD-IDAEERVIYTIVEEGGNKGIWIRDIR--VKSNLVMTQLTKVLKQLENKKLIKA 128
Query: 69 V--VNIHSKG---------------------KKHLMAVEFEPSKEISGGAWYSEGSLDTE 105
V VN+ S+ KK M EP + I+GGAWY + + E
Sbjct: 129 VKSVNVSSESLSWPSALVTNHVPLYNRQASKKKVYMLYNLEPDRSITGGAWYQDQDFEAE 188
Query: 106 FIKVVKSQCLK-----------------QIIKLKVATLEGISDSIKRSGAFKVDLTKQQI 148
F+ V+ QCL+ + KL V ++ + I G K+ L + +
Sbjct: 189 FVDVLNQQCLRFLRMKRETARNSGEGPLAVQKLSVCSVADVHRFISDLGISKISLDEDDL 248
Query: 149 EEIVRALVLDNQIMEVKSNGSGEFTNIPVGKVCYKNVSKGGGGGEPKTGSLASIPCGVCP 208
E I++ +V D + + +N G F Y+ + EP L +PCG+CP
Sbjct: 249 ETILKTVVYDGKAERI-ANMDGGF--------LYRAIE---SPLEPP--GLVQMPCGICP 294
Query: 209 QINICKPDGVISPKTCVYYTKWLD 232
I C G I+PK C Y ++WLD
Sbjct: 295 VIKNCSDCGEITPKLCTYISEWLD 318
>gi|395507808|ref|XP_003758211.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC6
[Sarcophilus harrisii]
Length = 255
Score = 108 bits (271), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 68/219 (31%), Positives = 113/219 (51%), Gaps = 29/219 (13%)
Query: 35 IWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVVNIHSKGKKHLMAVEFEPSKEISGG 94
IW+RD++ + NLP + K +K+L++K LIK V ++ + KK M +P + ++GG
Sbjct: 46 IWSRDIR--YKSNLPLTEINKILKNLESKKLIKAVKSVAASKKKVYMLYNLQPDRSVTGG 103
Query: 95 AWYSEGSLDTEFIKVVKSQCLKQI-IKLKVATLEGISDSIKRSGAF-------------- 139
AWYS+ ++EF++V+ QC K + K + A + I+R+ +F
Sbjct: 104 AWYSDQDFESEFVEVLNQQCFKFLQSKAETARESKQNPMIQRNSSFASSHEVWKYICELG 163
Query: 140 --KVDLTKQQIEEIVRALVLDNQI-MEVKSNGSGEFTNIPVGKVCYKNVSKGGGGGEP-- 194
KV+L+ + IE I+ L+ D ++ M + + G ++ Y+ VS P
Sbjct: 164 ISKVELSMEDIETILNTLIYDGKVEMTIIAAKEGTVGSVDGHMKLYRAVS-------PII 216
Query: 195 KTGSLASIPCGVCPQINICKPDGVISPKTCVYYTKWLDF 233
+ L PCG+CP + C G ISP CVY T+WL+F
Sbjct: 217 QPTGLVRAPCGLCPVFDDCHEGGEISPSNCVYMTEWLEF 255
>gi|289740045|gb|ADD18770.1| putative E3 ubiquitin ligase [Glossina morsitans morsitans]
Length = 294
Score = 108 bits (271), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 69/247 (27%), Positives = 113/247 (45%), Gaps = 33/247 (13%)
Query: 3 KRKRPDSNAPSDSLTDHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQN 62
+ K P + + E+++Y +I + GIW RD++ L+ NL + K +K+L+
Sbjct: 64 RSKEPKKSVLPKDADNEEKIVYGIIEEGGNKGIWIRDIR--LQSNLNMTQLNKILKNLET 121
Query: 63 KSLIKEVVNIHSKGKKHLMAVEFEPSKEISGGAWYSEGSLDTEFIKVVKSQCLK------ 116
K LIK V ++++ KK M EP + +SGGAWY + + EF+ V+ QCL+
Sbjct: 122 KKLIKAVKSVNASKKKVYMLYNLEPDRSVSGGAWYQDQDFEAEFVDVLNQQCLRFLQEKR 181
Query: 117 -----------QIIKLKVATLEGISDSIKRSGAFKVDLTKQQIEEIVRALVLDNQIMEVK 165
+ +L +++ + I G KV+L + +E I++ +V D
Sbjct: 182 KKAEERRDGPLAVRQLSCCSVKEVHKYISDVGISKVNLDEDDLETILKTVVYD------- 234
Query: 166 SNGSGEFTNIPVGKVCYKNVSKGGGGGEPKTGSLASIPCGVCPQINICKPDGVISPKTCV 225
G E + G Y+ + P G L +PCG CP I C G ++P C
Sbjct: 235 --GKAERILVSDGAYVYRAIE----SPLPPAG-LIQMPCGRCPVIKNCSKIGAVTPVKCQ 287
Query: 226 YYTKWLD 232
Y WLD
Sbjct: 288 YMKDWLD 294
>gi|91094199|ref|XP_971496.1| PREDICTED: similar to AGAP011973-PA [Tribolium castaneum]
gi|270011207|gb|EFA07655.1| hypothetical protein TcasGA2_TC030601 [Tribolium castaneum]
Length = 301
Score = 108 bits (270), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 67/233 (28%), Positives = 112/233 (48%), Gaps = 35/233 (15%)
Query: 18 DHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVVNIHSKGK 77
+ E++++ +I + GIW RD++ + NL + K +KSL+ K +IK V ++ + K
Sbjct: 86 NEEKVVFKIIEEAGNKGIWIRDIR--FKSNLNMTQLNKVLKSLETKKIIKAVKSVSASKK 143
Query: 78 KHLMAVEFEPSKEISGGAWYSEGSLDTEFIKVVKSQCLKQIIK----------------- 120
K M + E ++GGAWY + ++EF+ V+ QC + + +
Sbjct: 144 KVYMLYDLEADSSVTGGAWYQDQDFESEFVDVLSQQCCRYLRQKWEDANSMGGGPLLARN 203
Query: 121 LKVATLEGISDSIKRSGAFKVDLTKQQIEEIVRALVLDNQIME-VKSNGSGEFTNIPVGK 179
AT + + I G K+ L+ IE I+ +VLDN V +NGS
Sbjct: 204 RSYATAQDVHKFISELGISKISLSVDDIESILYTVVLDNNAERIVATNGS---------- 253
Query: 180 VCYKNVSKGGGGGEPKTGSLASIPCGVCPQINICKPDGVISPKTCVYYTKWLD 232
Y+ V+K +T + + CGVCP + C G I+PK C Y+T+WL+
Sbjct: 254 FLYRAVNKF-----MQTPGIVTTTCGVCPIASRCADTGFINPKVCNYFTEWLE 301
>gi|320168667|gb|EFW45566.1| polymerase III polypeptide F [Capsaspora owczarzaki ATCC 30864]
Length = 349
Score = 108 bits (269), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 72/240 (30%), Positives = 116/240 (48%), Gaps = 32/240 (13%)
Query: 20 ERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVVNIHSKGKKH 79
ERLIY I S ++ GIWTRD++ + N+ + K++K + LIK V ++ + KK
Sbjct: 98 ERLIYQTIESVKNRGIWTRDLRH--KTNIGIGQLNKTLKKFETAKLIKAVKSVAASKKKV 155
Query: 80 LMAVEFEPSKEISGGAWYSEGSLDTEFIKVVKSQCLKQIIKL------------KVATLE 127
M + EP K +SGGAWYSE D+EF + ++ L+ + + E
Sbjct: 156 YMLYDLEPDKTLSGGAWYSEQEFDSEFAQQIQHAVLRYLKSRYESCSAERKYIDSFVSCE 215
Query: 128 GISDSIKRSGAFKVDLTKQQIEEIVRALVLDNQIMEVKSN--GSGEFTNIPVGKVCY--- 182
++ I + L+ Q+I E++ +LV ++ VKS+ + N P Y
Sbjct: 216 EVTQHIADIKLATIALSFQEIHEVLISLVYGGALI-VKSHPLPFTRYDNAPDPDAHYLSY 274
Query: 183 -----KNVSKGGGGGE------PKTGSLASIPCGVCPQINICKPDGVISPKTCVYYTKWL 231
++V G P T +A++PCGVCP +C+ G+ISP+TC Y +W
Sbjct: 275 FVMQQEDVDPGLQLFAWKELRLPPT-PMATVPCGVCPVFQLCEDGGIISPETCQYMDEWF 333
>gi|125775055|ref|XP_001358779.1| GA18836 [Drosophila pseudoobscura pseudoobscura]
gi|195145010|ref|XP_002013489.1| GL24167 [Drosophila persimilis]
gi|54638520|gb|EAL27922.1| GA18836 [Drosophila pseudoobscura pseudoobscura]
gi|194102432|gb|EDW24475.1| GL24167 [Drosophila persimilis]
Length = 293
Score = 107 bits (267), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 68/244 (27%), Positives = 116/244 (47%), Gaps = 40/244 (16%)
Query: 9 SNAPSDSLTDHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKE 68
S P D+ + E+++Y ++ + GIW RD++ ++ NL + K +K+L+ K LIK
Sbjct: 70 SALPKDA-DNEEKIVYGIVEEGSNKGIWIRDIR--MKSNLNMTQLNKILKNLETKKLIKA 126
Query: 69 VVNIHSKGKKHLMAVEFEPSKEISGGAWYSEGSLDTEFIKVVKSQCLK------------ 116
V ++++ KK M EP + I+GGAWY + + EF+ V+ QCL+
Sbjct: 127 VKSVNASKKKVYMLYNLEPDRSITGGAWYQDQDFEVEFVDVLNQQCLRFLQMKRENAEKK 186
Query: 117 -----QIIKLKVATLEGISDSIKRSGAFKVDLTKQQIEEIVRALVLD---NQIMEVKSNG 168
+ ++ T+ + I G KV+L + +E I++ +V D +IM+ +
Sbjct: 187 RDGPLALKQMSCCTVSDVHKFISDLGISKVNLDEDDLETILKTVVYDGNAERIMQQDGSY 246
Query: 169 SGEFTNIPVGKVCYKNVSKGGGGGEPKTGSLASIPCGVCPQINICKPDGVISPKTCVYYT 228
N+P+ P TG L +PCG+CP I C G ++ C Y
Sbjct: 247 VYRAVNLPL----------------PPTG-LVQMPCGICPVIKNCSNCGDVTAIKCQYMK 289
Query: 229 KWLD 232
+WLD
Sbjct: 290 EWLD 293
>gi|195330977|ref|XP_002032179.1| GM23658 [Drosophila sechellia]
gi|194121122|gb|EDW43165.1| GM23658 [Drosophila sechellia]
Length = 293
Score = 107 bits (267), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 69/241 (28%), Positives = 113/241 (46%), Gaps = 34/241 (14%)
Query: 9 SNAPSDSLTDHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKE 68
S P D+ + E+++Y ++ + GIW RD++ + +N+ + K +K+L+ K LIK
Sbjct: 70 SALPKDA-DNEEKVVYGIVEEGGNKGIWIRDIRMKSNLNMIQ--LNKILKNLETKKLIKA 126
Query: 69 VVNIHSKGKKHLMAVEFEPSKEISGGAWYSEGSLDTEFIKVVKSQCLK------------ 116
V ++++ KK M EP I+GGAWY + + EF+ V+ QCL+
Sbjct: 127 VKSVNASKKKVYMLYNLEPDLSITGGAWYQDQDFEVEFVDVLNQQCLRFLQMKRDSAEKK 186
Query: 117 -----QIIKLKVATLEGISDSIKRSGAFKVDLTKQQIEEIVRALVLDNQIMEVKSNGSGE 171
++ T+ + I G KV+L + +E I++ +V D G+ E
Sbjct: 187 REGPLAFKQMSCCTVHEVQKFISDLGISKVNLAEADLETILKTVVYD---------GNAE 237
Query: 172 FTNIPVGKVCYKNVSKGGGGGEPKTGSLASIPCGVCPQINICKPDGVISPKTCVYYTKWL 231
G Y+ V+ P TG L +PCG+CP I C G ++ TC Y WL
Sbjct: 238 RVRQQDGSFVYRAVN----APLPPTG-LVQMPCGICPVIKNCSNCGDVTAITCEYMRDWL 292
Query: 232 D 232
D
Sbjct: 293 D 293
>gi|24648960|ref|NP_651029.1| CG5380, isoform A [Drosophila melanogaster]
gi|386766236|ref|NP_001247237.1| CG5380, isoform B [Drosophila melanogaster]
gi|20139853|sp|Q9VD25.1|RPC6_DROME RecName: Full=Probable DNA-directed RNA polymerase III subunit
RPC6; Short=DNA-directed RNA polymerase III subunit F;
Short=RNA polymerase III subunit C6
gi|7300836|gb|AAF55978.1| CG5380, isoform A [Drosophila melanogaster]
gi|21430846|gb|AAM51101.1| SD19581p [Drosophila melanogaster]
gi|220950288|gb|ACL87687.1| CG5380-PA [synthetic construct]
gi|220959240|gb|ACL92163.1| CG5380-PA [synthetic construct]
gi|295293321|gb|ADF87926.1| MIP22258p [Drosophila melanogaster]
gi|383292866|gb|AFH06555.1| CG5380, isoform B [Drosophila melanogaster]
Length = 293
Score = 107 bits (266), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 69/241 (28%), Positives = 113/241 (46%), Gaps = 34/241 (14%)
Query: 9 SNAPSDSLTDHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKE 68
S P D+ + E+++Y ++ + GIW RD++ + +N+ + K +K+L+ K LIK
Sbjct: 70 SALPKDA-DNEEKVVYGIVEEGGNKGIWIRDIRMKSNLNMIQ--LNKILKNLETKKLIKA 126
Query: 69 VVNIHSKGKKHLMAVEFEPSKEISGGAWYSEGSLDTEFIKVVKSQCLK------------ 116
V ++++ KK M EP I+GGAWY + + EF+ V+ QCL+
Sbjct: 127 VKSVNASKKKVYMLYNLEPDLSITGGAWYQDQDFEVEFVDVLNQQCLRFLQMKRDSAEKK 186
Query: 117 -----QIIKLKVATLEGISDSIKRSGAFKVDLTKQQIEEIVRALVLDNQIMEVKSNGSGE 171
++ T+ + I G KV+L + +E I++ +V D G+ E
Sbjct: 187 REGPLAFKQMSCCTVNEVQKFISDLGISKVNLAEADLETILKTVVYD---------GNAE 237
Query: 172 FTNIPVGKVCYKNVSKGGGGGEPKTGSLASIPCGVCPQINICKPDGVISPKTCVYYTKWL 231
G Y+ V+ P TG L +PCG+CP I C G ++ TC Y WL
Sbjct: 238 RVRQQDGSFVYRAVN----APLPPTG-LVQMPCGICPVIKNCSNCGDVTAITCEYMRDWL 292
Query: 232 D 232
D
Sbjct: 293 D 293
>gi|194911143|ref|XP_001982296.1| GG12523 [Drosophila erecta]
gi|190656934|gb|EDV54166.1| GG12523 [Drosophila erecta]
Length = 293
Score = 106 bits (265), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 69/241 (28%), Positives = 113/241 (46%), Gaps = 34/241 (14%)
Query: 9 SNAPSDSLTDHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKE 68
S P D+ + E+++Y ++ + GIW RD++ + +N+ + K +K+L+ K LIK
Sbjct: 70 SALPKDA-DNEEKVVYGIVEEGGNKGIWIRDIRMKSNLNMIQ--LNKILKNLETKKLIKA 126
Query: 69 VVNIHSKGKKHLMAVEFEPSKEISGGAWYSEGSLDTEFIKVVKSQCLK------------ 116
V ++++ KK M EP I+GGAWY + + EF+ V+ QCL+
Sbjct: 127 VKSVNASKKKVYMLYNLEPDLSITGGAWYQDQDFEVEFVDVLNQQCLRFLQMKRDSAEKK 186
Query: 117 -----QIIKLKVATLEGISDSIKRSGAFKVDLTKQQIEEIVRALVLDNQIMEVKSNGSGE 171
++ T+ + I G KV+L + +E I++ +V D G+ E
Sbjct: 187 REGPLAFKQMSCCTVNEVQKFISDLGISKVNLAEADLETILKTVVYD---------GNAE 237
Query: 172 FTNIPVGKVCYKNVSKGGGGGEPKTGSLASIPCGVCPQINICKPDGVISPKTCVYYTKWL 231
G Y+ V+ P TG L +PCG+CP I C G ++ TC Y WL
Sbjct: 238 RVRQQDGSFVYRAVN----SPLPPTG-LVQMPCGICPVIKNCSNCGDVTAITCEYMRDWL 292
Query: 232 D 232
D
Sbjct: 293 D 293
>gi|2228752|gb|AAB63677.1| RNA polymerase III subunit [Homo sapiens]
Length = 317
Score = 106 bits (265), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 68/237 (28%), Positives = 117/237 (49%), Gaps = 30/237 (12%)
Query: 18 DHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVVNIHSKGK 77
+ E+L+Y +I + GIW+RD++ + NLP + K +K+L++K LIK V ++ + K
Sbjct: 90 NQEKLVYQIIEDAGNKGIWSRDIR--YKSNLPLTEINKILKNLESKKLIKAVKSVAASKK 147
Query: 78 KHLMAVEFEPSKEISGGAWYSEGSLDTEFIKVVKSQCLKQI-IKLKVATLEGISDSIKRS 136
K M +P + ++GGAWYS+ ++EF++V+ QC K + K + A + I+R+
Sbjct: 148 KVYMLYNLQPDRSVTGGAWYSDQDFESEFVEVLNQQCFKFLQSKAETARESKQNPMIQRN 207
Query: 137 GAF----------------KVDLTKQQIEEIVRALVLDNQ----IMEVKSNGSGEFTNIP 176
+F KV+L+ + IE I+ L+ D + I+ K S +
Sbjct: 208 SSFASSHEVWKYICELGISKVELSMEDIETILNTLIYDGKVEMTIIACKRRHSWQ----- 262
Query: 177 VGKVCYKNVSKGGGGGEPKTGSLASIPCGVCPQINICKPDGVISPKTCVYYTKWLDF 233
+ ++ V +G P P P + C G ISP C+Y T+WL+F
Sbjct: 263 -CRWTHETV-QGSQSNHPSHRFGPGHPVDSAPVFDDCHEGGEISPSNCIYMTEWLEF 317
>gi|119489044|ref|XP_001262822.1| DNA-directed RNA polymerase III subunit Rpc34, putative
[Neosartorya fischeri NRRL 181]
gi|119410980|gb|EAW20925.1| DNA-directed RNA polymerase III subunit Rpc34, putative
[Neosartorya fischeri NRRL 181]
Length = 352
Score = 106 bits (265), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 71/260 (27%), Positives = 115/260 (44%), Gaps = 45/260 (17%)
Query: 15 SLTDHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVVNIHS 74
+L+ E L+Y+VI S GIW R ++ R NL +I+ + +KSL+ KS IK V N+
Sbjct: 89 NLSPDESLVYNVIHSTGRNGIWVRAIQN--RTNLHKSILDRCLKSLEGKSYIKSVHNVKF 146
Query: 75 KGKKHLMAVEFEPSKEISGGAWYSEGSLDTEFIKVVKSQCLKQII-------------KL 121
+K M PS++++GGAW+++G LD FI V + +L
Sbjct: 147 PSRKMYMLAGLAPSEDVTGGAWFTDGVLDANFISTVAGFIEYTVSRKSWYEVPATGNKRL 206
Query: 122 KVA--------------------------TLEGISDSIKRSGAFKVDLTKQQIEEIVRAL 155
K A T+ I+ ++ SG V L ++ I +++ L
Sbjct: 207 KTADGRASVKQESGEKKYLPYPAGYQGYPTVAMITAAVNESGITPVRLGEESIIQLLEML 266
Query: 156 VLDNQIMEVKSNGSGEFTNIPVGKVCYKNVSKGGG----GGEPKTGSLASIPCGVCPQIN 211
D +++ + + + P KN G G + T + +PCG CP
Sbjct: 267 CYDKKLVALNNGQFYKSVKNPAAVKMEKNRKPEGDVEDVGDKLVTNGMTEVPCGPCPVFK 326
Query: 212 ICKPDGVISPKTCVYYTKWL 231
+C P G +SP+TC Y+ WL
Sbjct: 327 LCVPGGAVSPETCEYFDPWL 346
>gi|321463822|gb|EFX74835.1| hypothetical protein DAPPUDRAFT_199715 [Daphnia pulex]
Length = 322
Score = 106 bits (264), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 66/233 (28%), Positives = 115/233 (49%), Gaps = 33/233 (14%)
Query: 19 HERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVVNIHSKGKK 78
E ++ +I + GI +D++ + +NL + K +K+L+ K+LIK V++I K
Sbjct: 104 EENVVMRIIEEAGNKGILNKDIRDQSGLNL--TTINKILKALEGKNLIKSVLSISVAKIK 161
Query: 79 HLMAVEFEPSKEISGGAWYSEGSLDTEFIKVVKSQCLKQI-IKLKVATLEGISDS-IKRS 136
M + +P + ++GG+WY++G ++E + +V QC + + K + A L+ + I R+
Sbjct: 162 VYMLFDLQPDRSVTGGSWYTDGEFESELVDIVNQQCYRMLQQKAEAAKLKAMDGPLIVRN 221
Query: 137 GAF----------------KVDLTKQQIEEIVRALVLDNQI-MEVKSNGSGEFTNIPVGK 179
+F K +LT ++IE I+ LV D +I M + S+G + +
Sbjct: 222 ASFLSSKEICQMISDMNIVKFNLTVEEIEAILETLVYDGKIEMRMVSDGDERIKTYRIVE 281
Query: 180 VCYKNVSKGGGGGEPKTGSLASIPCGVCPQINICKPDGVISPKTCVYYTKWLD 232
+ ++ IPCGVCP I C G + PK CVYY +WLD
Sbjct: 282 TLL------------SSAAIVRIPCGVCPVIVKCGTAGEVQPKNCVYYDQWLD 322
>gi|70982438|ref|XP_746747.1| DNA-directed RNA polymerase III subunit Rpc34 [Aspergillus
fumigatus Af293]
gi|66844371|gb|EAL84709.1| DNA-directed RNA polymerase III subunit Rpc34, putative
[Aspergillus fumigatus Af293]
gi|159123012|gb|EDP48132.1| DNA-directed RNA polymerase III subunit Rpc34, putative
[Aspergillus fumigatus A1163]
Length = 352
Score = 106 bits (264), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 71/260 (27%), Positives = 115/260 (44%), Gaps = 45/260 (17%)
Query: 15 SLTDHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVVNIHS 74
+L+ E L+Y+VI S GIW R ++ R NL +I+ + +KSL+ KS IK V N+
Sbjct: 89 NLSPDESLVYNVIHSTGRNGIWVRAIQS--RTNLHKSILDRCLKSLEGKSYIKSVHNVKF 146
Query: 75 KGKKHLMAVEFEPSKEISGGAWYSEGSLDTEFIKVVKSQCLKQII-------------KL 121
+K M PS++++GGAW+++G LD FI V + +L
Sbjct: 147 PSRKMYMLAGLAPSEDVTGGAWFTDGVLDANFISTVAGFIEYTVSRKSWYEVPATGNKRL 206
Query: 122 KVA--------------------------TLEGISDSIKRSGAFKVDLTKQQIEEIVRAL 155
K A T+ I+ ++ SG V L ++ I +++ L
Sbjct: 207 KTADGRASVKQESGEKKYLPYPAGYQGYPTVAMITAAVNESGITPVRLGEESIIQLLEML 266
Query: 156 VLDNQIMEVKSNGSGEFTNIPVGKVCYKNVSKGGG----GGEPKTGSLASIPCGVCPQIN 211
D +++ + + + P KN G G + T + +PCG CP
Sbjct: 267 CYDKKLVALNNGQFYKSVKNPAAVKMEKNRKPEGDVEDVGDKLVTNGMTEVPCGPCPVFK 326
Query: 212 ICKPDGVISPKTCVYYTKWL 231
+C P G +SP+TC Y+ WL
Sbjct: 327 LCVPGGAVSPETCEYFDPWL 346
>gi|212532631|ref|XP_002146472.1| DNA-directed RNA polymerase III subunit Rpc34, putative
[Talaromyces marneffei ATCC 18224]
gi|210071836|gb|EEA25925.1| DNA-directed RNA polymerase III subunit Rpc34, putative
[Talaromyces marneffei ATCC 18224]
Length = 359
Score = 105 bits (263), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 69/278 (24%), Positives = 116/278 (41%), Gaps = 70/278 (25%)
Query: 15 SLTDHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVVNIHS 74
SL D E+L+Y+VI S GIW R + + R +L + K++KSL+ K+ IK + N+
Sbjct: 85 SLNDTEKLVYNVIHSTGRTGIWIRQLGK--RTDLHKTSLDKALKSLEGKNFIKSIFNVKH 142
Query: 75 KGKKHLMAVEFEPSKEISGGAWYSEGSLDTEFIKVVKSQCLKQIIKLK------------ 122
GKK M E P+++++GGAW+++G LD EFI V+ Q+ K
Sbjct: 143 PGKKVYMLAELTPAEDVTGGAWFTDGVLDAEFIGVLSDYIEVQVSKRSWYEVIPKPAASS 202
Query: 123 -------------------------------------VATLEGISDSIKRSGAFKVDLTK 145
T+ I+ + ++G V L +
Sbjct: 203 SNNKRQKLNTGEIMKQNEPTATEKERKYYPYPADYKFYPTVGEITVEVNKTGITPVKLDE 262
Query: 146 QQIEEIVRALVLDNQIMEVKSNGSGEFTNIP------------VGKVCYKNVSKGGGGGE 193
I +++R + D +++ + + + + P +V K+ G G
Sbjct: 263 GSISQLLRMMCFDGRLIALNDHTNYKAVRRPNEIIKARADADRPPEVQQKSFFNGANG-- 320
Query: 194 PKTGSLASIPCGVCPQINICKPDGVISPKTCVYYTKWL 231
+ PCG CP IC+P G +SP+ C Y+ W
Sbjct: 321 -----MTEAPCGQCPVFKICQPGGTVSPENCEYFDDWF 353
>gi|195445244|ref|XP_002070239.1| GK11949 [Drosophila willistoni]
gi|194166324|gb|EDW81225.1| GK11949 [Drosophila willistoni]
Length = 295
Score = 105 bits (263), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 70/244 (28%), Positives = 116/244 (47%), Gaps = 40/244 (16%)
Query: 9 SNAPSDSLTDHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKE 68
S P D+ + E+++Y ++ + GIW RD++ ++ NL + K +K+L+ K LIK
Sbjct: 72 SALPKDA-DNEEKVVYGIVEEGGNKGIWIRDIR--MKSNLNMTQLNKILKNLETKKLIKA 128
Query: 69 VVNIHSKGKKHLMAVEFEPSKEISGGAWYSEGSLDTEFIKVVKSQCLK------------ 116
V ++++ KK M EP + ++GGAWY + + EF+ V+ QCL+
Sbjct: 129 VKSVNASKKKVYMLYNLEPDRTVTGGAWYQDQDFEVEFVDVLNQQCLRFLQMKRENAEKK 188
Query: 117 -----QIIKLKVATLEGISDSIKRSGAFKVDLTKQQIEEIVRALVLDNQIMEV-KSNGSG 170
+ ++ T+ + I G KV+L + +E I++ +V D V KS+GS
Sbjct: 189 REGPLVLREMSCCTVNEVHKFISDLGVSKVNLDEDDLETILKTVVYDGNAERVMKSDGSY 248
Query: 171 EF--TNIPVGKVCYKNVSKGGGGGEPKTGSLASIPCGVCPQINICKPDGVISPKTCVYYT 228
+ N P+ P TG L +PCG+CP I C G ++ C Y
Sbjct: 249 VYRAVNSPL----------------PPTG-LIQMPCGICPVIKNCSDCGDVTAINCQYMK 291
Query: 229 KWLD 232
WLD
Sbjct: 292 DWLD 295
>gi|307207698|gb|EFN85335.1| DNA-directed RNA polymerase III subunit RPC6 [Harpegnathos
saltator]
Length = 331
Score = 105 bits (263), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 67/235 (28%), Positives = 107/235 (45%), Gaps = 37/235 (15%)
Query: 18 DHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVVNIHSKGK 77
+ E+++Y +I + GIW RD++ + NL + K +KSL+ K IK V ++ + K
Sbjct: 110 NEEKIVYTIIEEAGNKGIWIRDIR--FKSNLAPTQLNKILKSLETKKCIKAVKSVAASKK 167
Query: 78 KHLMAVEFEPSKEISGGAWYSEGSLDTEFIKVVKSQCLKQI-----------------IK 120
K M EP + ++GGAWY + +TEF+ ++ C +
Sbjct: 168 KVYMLYSLEPDRSVTGGAWYQDQDFETEFVDILTQSCYTYLNAKATEAKNCKHGPIVTRN 227
Query: 121 LKVATLEGISDSIKRSGAFKVDLTKQQIEEIVRALVLDNQIMEVKSNGSGEFTNIPVGKV 180
+ + + + I SG KV L+ + IE ++ ALV D +I E T G
Sbjct: 228 MSFVSSKDVHKYITHSGVSKVVLSVEDIEMLLNALVYDGKI---------EKTATEEGNF 278
Query: 181 CYKNVSKGGGGGEPKTGS--LASIPCGVCPQINICKPDGVISPKTCVYYTKWLDF 233
Y+ + +P S L PCG+CP C G ++P C Y TKWL+F
Sbjct: 279 MYRAI-------QPLLSSPGLIKAPCGICPVRKNCSNVGEVTPIKCEYITKWLEF 326
>gi|225680490|gb|EEH18774.1| DNA-directed RNA polymerase III subunit RPC6 [Paracoccidioides
brasiliensis Pb03]
gi|226292874|gb|EEH48294.1| DNA-directed RNA polymerase III subunit RPC6 [Paracoccidioides
brasiliensis Pb18]
Length = 362
Score = 105 bits (262), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 67/264 (25%), Positives = 121/264 (45%), Gaps = 49/264 (18%)
Query: 15 SLTDHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVVNIHS 74
+L ERLIY V+ S G+WTR +K R NL IV +S+KSL+ K+ IK V N+
Sbjct: 95 NLNAEERLIYSVVESTGRGGVWTRTIKT--RTNLHQTIVNRSLKSLETKNYIKSVRNVKY 152
Query: 75 KGKKHLMAVEFEPSKEISGGAWYSEGSLDTEFIKVV---------------KSQCLKQII 119
+K M +PS++++GGAW+++G LD +FI+ + ++ +++
Sbjct: 153 PQRKMYMLSGLQPSEDVTGGAWFTDGVLDVDFIRGIGGWIEHWVSSRSWFDQAAAERKVK 212
Query: 120 KLKV---------------------ATLEGISDSIKRSGAFKVDLTKQQIEEIVRALVLD 158
+ KV T+ I+++I SG V L + I +++ L D
Sbjct: 213 RQKVRQDSSKGEPQYIPYLPSYSGYPTVTDITNAINNSGLTPVTLCESSISQLLEMLCFD 272
Query: 159 NQIMEVKSNGSGEFTNIPVGKVCYKNVS------KGGGGGEPKT-----GSLASIPCGVC 207
+++ ++ + + P +++ KGG + + + PCG C
Sbjct: 273 GKLISLRDGAAYKSVKKPNQISLQRDLGLQTGDKKGGNNADQDSLILGGNGMTEAPCGRC 332
Query: 208 PQINICKPDGVISPKTCVYYTKWL 231
P +C+ G ++ C Y+ +WL
Sbjct: 333 PVFTLCQEGGPVNATNCEYFDEWL 356
>gi|194743126|ref|XP_001954051.1| GF16937 [Drosophila ananassae]
gi|190627088|gb|EDV42612.1| GF16937 [Drosophila ananassae]
Length = 293
Score = 105 bits (262), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 68/241 (28%), Positives = 113/241 (46%), Gaps = 34/241 (14%)
Query: 9 SNAPSDSLTDHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKE 68
S P D+ + E+++Y ++ + GIW RD++ + +N+ + K +K+L+ K LIK
Sbjct: 70 SALPKDA-DNEEKVVYGIVEEGGNKGIWIRDIRMKSNLNMIQ--LNKILKNLETKKLIKA 126
Query: 69 VVNIHSKGKKHLMAVEFEPSKEISGGAWYSEGSLDTEFIKVVKSQCLK------------ 116
V ++++ KK M EP I+GGAWY + + EF+ V+ QCL+
Sbjct: 127 VKSVNASKKKVYMLYNLEPDLSITGGAWYQDQDFEVEFVDVLNQQCLRFLQMKRDGAEKK 186
Query: 117 -----QIIKLKVATLEGISDSIKRSGAFKVDLTKQQIEEIVRALVLDNQIMEVKSNGSGE 171
++ T+ + I G KV+L + +E I++ +V D G+ E
Sbjct: 187 REGPLAFKQMSCCTVNEVHKFISDLGISKVNLAEADLETILKTVVYD---------GNAE 237
Query: 172 FTNIPVGKVCYKNVSKGGGGGEPKTGSLASIPCGVCPQINICKPDGVISPKTCVYYTKWL 231
+ G Y+ V+ TG L +PCG+CP I C G ++ TC Y WL
Sbjct: 238 RVRLQDGSFVYRAVNSPLA----PTG-LVQMPCGICPVIKNCSNCGDVTAITCEYMRDWL 292
Query: 232 D 232
D
Sbjct: 293 D 293
>gi|395829733|ref|XP_003788000.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase III
subunit RPC6-like [Otolemur garnettii]
Length = 310
Score = 105 bits (261), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 66/237 (27%), Positives = 118/237 (49%), Gaps = 32/237 (13%)
Query: 18 DHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVVNIHSKGK 77
+ E+L+Y +I + GIW+RD++ + +LP V K +K+L++K LIK V ++ + K
Sbjct: 85 NQEKLVYQIIEDAGNKGIWSRDIR--YKSDLPLTEVNKILKNLESKKLIKAVKSVAASKK 142
Query: 78 KHLMAVEFEPSKEISGGAWYSEGSLDTEFIKVVKSQCLKQI-IKLKVATLEGISDSIKRS 136
K M +P + ++GGAWYS+ ++EF++V+ QC K + K + A + I+R+
Sbjct: 143 KVYMLYNMQPDRPVTGGAWYSDQDFESEFVEVLNHQCFKFLQTKAETAQESKKNPVIQRN 202
Query: 137 GAF----------------KVDLTKQQIEEIVRALVLDNQ----IMEVKSNGSGEFTNIP 176
+F +V+L+ + IE I+ L+ D + I+ K G ++
Sbjct: 203 SSFASSHKVWKYICELGISEVELSMEDIETILNTLIYDGKVKMTIIVAKEGTVGTDGHMK 262
Query: 177 VGKVCYKNVSKGGGGGEPKTGSLASIPCGVCPQINICKPDGVISPKTCVYYTKWLDF 233
+ + + G L PC + P + C G ISP C+Y T+WL++
Sbjct: 263 LYRAVSPIILPMG---------LIRAPCDLXPVFDECHEGGEISPSICIYMTEWLEY 310
>gi|302652784|ref|XP_003018234.1| hypothetical protein TRV_07755 [Trichophyton verrucosum HKI 0517]
gi|291181855|gb|EFE37589.1| hypothetical protein TRV_07755 [Trichophyton verrucosum HKI 0517]
Length = 365
Score = 105 bits (261), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 68/259 (26%), Positives = 120/259 (46%), Gaps = 43/259 (16%)
Query: 14 DSLTDHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVVNIH 73
++L ERL+Y+VI S GIWT+ +K R NL I+ + +KSL+ K+ +K V N+
Sbjct: 102 NNLNGEERLVYNVIHSTGRNGIWTKIIKT--RTNLHQTIMNRCLKSLEAKNYVKSVRNVK 159
Query: 74 SKGKKHLMAVEFEPSKEISGGAWYSEGSLDTEFIKVV------------------KSQCL 115
+K M +PS+EI+GGAW+++G LD +FI+ + + Q
Sbjct: 160 YPSRKIYMLSGLQPSEEITGGAWFTDGVLDADFIRGLSGWIEHWVSARSWNSPGAEDQPK 219
Query: 116 KQIIKLKV-----------------ATLEGISDSIKRSGAFKVDLTKQQIEEIVRALVLD 158
+ KL+ T I+ +I SG V + + I ++++ L D
Sbjct: 220 GKKRKLQADDSETQYIPYLPSYQGHPTTADITKAINGSGLTPVTMDEGSISQLLQMLCYD 279
Query: 159 NQIMEVKSNGSGEFTNIPVGKVCYKNVSKGGGGGEPKTGS------LASIPCGVCPQINI 212
+++ ++ + P +++ G G GS + PCG CP ++
Sbjct: 280 GRLISLRDGAAYRSVKKPNEISLQRDLGLQGPDGGANEGSALGSNGMTEAPCGQCPVFSL 339
Query: 213 CKPDGVISPKTCVYYTKWL 231
C+P G ++ + C Y+ +WL
Sbjct: 340 CRPGGPVNAENCEYFDEWL 358
>gi|327296369|ref|XP_003232879.1| DNA-directed RNA polymerase III subunit Rpc34 [Trichophyton rubrum
CBS 118892]
gi|326465190|gb|EGD90643.1| DNA-directed RNA polymerase III subunit Rpc34 [Trichophyton rubrum
CBS 118892]
Length = 357
Score = 105 bits (261), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 68/258 (26%), Positives = 122/258 (47%), Gaps = 43/258 (16%)
Query: 15 SLTDHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVVNIHS 74
+L ERL+Y+VI S GIWT+ +K R NL I+ + +KSL+ K+ +K V N+
Sbjct: 95 NLNGEERLVYNVIHSTGRNGIWTKVIKT--RTNLHQTIMNRCLKSLEAKNYVKSVRNVKY 152
Query: 75 KGKKHLMAVEFEPSKEISGGAWYSEGSLDTEFIKVV------------------------ 110
+K M +PS+EI+GGAW+++G LD +FI+ +
Sbjct: 153 PSRKIYMLSGLQPSEEITGGAWFTDGVLDADFIRGLSGWIEHWVSARSWNSPGAEDQPKG 212
Query: 111 ----------KSQCLKQIIKLK-VATLEGISDSIKRSGAFKVDLTKQQIEEIVRALVLDN 159
++Q + + + T I+ +I SG V + + I ++++ L D
Sbjct: 213 KKRKLPADDSETQYIPYLPSYQGHPTTADITKAINGSGLTPVTMDEGSISQLLQMLCYDG 272
Query: 160 QIMEVKSNGSGEFTNIPVGKVCYKNVS-KGGGGGEPKTGSLAS-----IPCGVCPQINIC 213
+++ ++ + P +++ +G GG + SL S PCG CP ++C
Sbjct: 273 RLVSLRDGAAYRSVKKPNEISLQRDLGLQGPDGGANEGSSLGSNGMTEAPCGQCPVFSLC 332
Query: 214 KPDGVISPKTCVYYTKWL 231
+P G ++ + C Y+ +WL
Sbjct: 333 RPGGPVNAENCEYFNEWL 350
>gi|195502543|ref|XP_002098270.1| GE24046 [Drosophila yakuba]
gi|194184371|gb|EDW97982.1| GE24046 [Drosophila yakuba]
Length = 293
Score = 104 bits (260), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 68/241 (28%), Positives = 112/241 (46%), Gaps = 34/241 (14%)
Query: 9 SNAPSDSLTDHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKE 68
S P D+ + E+++Y ++ + GIW RD++ + +N+ + K +K+L+ K LIK
Sbjct: 70 SALPKDA-DNEEKVVYGIVEEGGNKGIWIRDIRMKSNLNMIQ--LNKILKNLETKKLIKA 126
Query: 69 VVNIHSKGKKHLMAVEFEPSKEISGGAWYSEGSLDTEFIKVVKSQCLK------------ 116
V ++++ KK M EP I+GGAWY + + EF+ V+ QCL+
Sbjct: 127 VKSVNASKKKVYMLYNLEPDLSITGGAWYQDQDFEVEFVDVLNQQCLRFLQMKRDSAEKK 186
Query: 117 -----QIIKLKVATLEGISDSIKRSGAFKVDLTKQQIEEIVRALVLDNQIMEVKSNGSGE 171
++ T+ + I G KV+L + +E I++ +V D G+ E
Sbjct: 187 REGPLAFKQMSCCTVNEVQKFISDLGISKVNLAEADLETILKTVVYD---------GNAE 237
Query: 172 FTNIPVGKVCYKNVSKGGGGGEPKTGSLASIPCGVCPQINICKPDGVISPKTCVYYTKWL 231
G Y+ V+ P TG L +PCG+CP I C G ++ C Y WL
Sbjct: 238 RVRQQDGSFVYRAVN----SPLPPTG-LVQMPCGICPVIKNCSNCGDVTAINCEYMRDWL 292
Query: 232 D 232
D
Sbjct: 293 D 293
>gi|296810958|ref|XP_002845817.1| DNA-directed RNA polymerase III subunit RPC6 [Arthroderma otae CBS
113480]
gi|238843205|gb|EEQ32867.1| DNA-directed RNA polymerase III subunit RPC6 [Arthroderma otae CBS
113480]
Length = 358
Score = 104 bits (260), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 67/259 (25%), Positives = 120/259 (46%), Gaps = 44/259 (16%)
Query: 15 SLTDHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVVNIHS 74
+L ERL+Y+VI S GIWT+ +K R NL I+ + +KSL+ K+ +K V N+
Sbjct: 95 NLNGEERLVYNVIHSTGRNGIWTKIIKT--RTNLHQTIMNRCLKSLEAKNYVKSVRNVKY 152
Query: 75 KGKKHLMAVEFEPSKEISGGAWYSEGSLDTEFIKVV------------------------ 110
+K M +PS+EI+GGAW+++G LD +FI+ +
Sbjct: 153 PSRKIYMLSGLQPSEEITGGAWFTDGVLDADFIRGLSGWIEHWVSARSWNAPGGEDQLKG 212
Query: 111 ----------KSQCLKQIIKLK-VATLEGISDSIKRSGAFKVDLTKQQIEEIVRALVLDN 159
++Q + + + T I+ +I SG V + + I ++++ L D
Sbjct: 213 KKRKAQADDSETQYIPYLPSYQGHPTTADITKAINGSGLTPVTMDEGSISQLLQMLCYDG 272
Query: 160 QIMEVKSNGSGEFTNIPVGKVCYKNVS-----KGGGGGEPKTGS--LASIPCGVCPQINI 212
+++ ++ + P +++ G P GS + PCG CP ++
Sbjct: 273 RLVSLRDGAAYRSVKKPNEISLQRDLGLQGPDSGATNEGPSLGSNGMTEAPCGQCPVFSL 332
Query: 213 CKPDGVISPKTCVYYTKWL 231
C+P G ++P+ C Y+ +WL
Sbjct: 333 CRPGGPVNPENCEYFDEWL 351
>gi|425773182|gb|EKV11551.1| DNA-directed RNA polymerase III subunit Rpc34, putative
[Penicillium digitatum Pd1]
gi|425778785|gb|EKV16890.1| DNA-directed RNA polymerase III subunit Rpc34, putative
[Penicillium digitatum PHI26]
Length = 351
Score = 104 bits (259), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 71/266 (26%), Positives = 122/266 (45%), Gaps = 54/266 (20%)
Query: 15 SLTDHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVVNIHS 74
+LT E ++Y+VI S + GIW R + R NL +I+ + +K+L+ K+ IK + N+
Sbjct: 85 NLTPDEAMVYNVIHSTERTGIWVRHIGN--RTNLHKSILDRCLKALEGKNYIKSLHNVKY 142
Query: 75 KGKKHLMAVEFEPSKEISGGAWYSEGSLDTEFI--------------------------K 108
+K M PS+E++GGAW+++G LD FI K
Sbjct: 143 PSRKMYMLAGLAPSEEVTGGAWFTDGVLDANFINSVAGYIEYTVSRKSWYEVPASDRKNK 202
Query: 109 VVKSQCLKQIIK-------------LKVATLEGISDSIKRSGAFKVDLTKQQIEEIVRAL 155
+K+ K +K T+ I+ ++ SG V L ++ + +++ L
Sbjct: 203 RIKTASGKADVKSDEKTYLPYPHGYAGYPTVAQITSAVNESGITPVRLGEESVVQLLEML 262
Query: 156 VLDNQIMEVKSNGSGE-FTNIPVGKVCYKNVS-KGGGGGEPKTGS--------LASIPCG 205
DN+++ + G+GE + ++ + N S K GE + + + PCG
Sbjct: 263 CFDNKLVAL---GNGEWYRSLKSPEAVKANQSRKPPVDGEDLSAASKHLVKNGMTEAPCG 319
Query: 206 VCPQINICKPDGVISPKTCVYYTKWL 231
CP +C P G +SP+TC Y+ WL
Sbjct: 320 QCPVFRLCAPGGAVSPETCEYFDPWL 345
>gi|332372876|gb|AEE61580.1| unknown [Dendroctonus ponderosae]
Length = 305
Score = 104 bits (259), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 69/247 (27%), Positives = 112/247 (45%), Gaps = 33/247 (13%)
Query: 3 KRKRPDSNAPSDSLTDHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQN 62
K K P + + + E+++Y +I + GIW RD++ + N+ + + K +KSL+
Sbjct: 73 KFKDPTKKSANKGSDNEEKVVYKIIEEAGNKGIWIRDIR--FKSNINNTQLNKVLKSLEA 130
Query: 63 KSLIKEVVNIHSKGKKHLMAVEFEPSKEISGGAWYSEGSLDTEFIKVVKSQCLKQII-KL 121
K +IK V ++ + KK M + +P ++GGAWY + ++EF+ V+ QC + ++ +L
Sbjct: 131 KKIIKAVKSVAASKKKVYMLFDLDPDSSVTGGAWYQDQDFESEFVDVLNQQCHRYLVQRL 190
Query: 122 KVATLEG----------------ISDSIKRSGAFKVDLTKQQIEEIVRALVLDNQIMEVK 165
+ A +G + I G KV L+ IE I+ +VLDN V
Sbjct: 191 EDAVKQGGGPLMVRNRSYAASSEVQKFISDLGISKVSLSIADIESILYTVVLDNNAERVA 250
Query: 166 SNGSGEFTNIPVGKVCYKNVSKGGGGGEPKTGSLASIPCGVCPQINICKPDGVISPKTCV 225
+ G YK V+K L CGVC C G I+P +C
Sbjct: 251 AAN---------GTFLYKAVNKFLA-----VPGLVKTTCGVCLLAQQCGKTGSINPSSCE 296
Query: 226 YYTKWLD 232
Y WLD
Sbjct: 297 YLANWLD 303
>gi|302502965|ref|XP_003013443.1| hypothetical protein ARB_00261 [Arthroderma benhamiae CBS 112371]
gi|291177007|gb|EFE32803.1| hypothetical protein ARB_00261 [Arthroderma benhamiae CBS 112371]
Length = 357
Score = 104 bits (259), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 68/258 (26%), Positives = 119/258 (46%), Gaps = 43/258 (16%)
Query: 15 SLTDHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVVNIHS 74
+L ERL+Y+VI S GIWT+ +K R NL I+ + +KSL+ K+ +K V N+
Sbjct: 95 NLNGEERLVYNVIHSTGRNGIWTKIIKT--RTNLHQTIMNRCLKSLEAKNYVKSVRNVKY 152
Query: 75 KGKKHLMAVEFEPSKEISGGAWYSEGSLDTEFIKVV------------------KSQCLK 116
+K M +PS+EI+GGAW+++G LD +FI+ + + Q
Sbjct: 153 PSRKIYMLSGLQPSEEITGGAWFTDGVLDADFIRGLSGWIEHWVSARSWNSPGAEDQPKG 212
Query: 117 QIIKLKV-----------------ATLEGISDSIKRSGAFKVDLTKQQIEEIVRALVLDN 159
+ KL+ T I+ +I SG V + + I ++++ L D
Sbjct: 213 KKRKLQADDSETQYIPYLPSYQGHPTTADITKAINGSGLTPVTMDEGSISQLLQMLCYDG 272
Query: 160 QIMEVKSNGSGEFTNIPVGKVCYKNVSKGGGGGEPKTGS------LASIPCGVCPQINIC 213
+++ ++ + P +++ G G GS + PCG CP ++C
Sbjct: 273 RLVSLRDGAAYRSVKKPNEISLQRDLGLQGPDGGANEGSALGSNGMTEAPCGQCPVFSLC 332
Query: 214 KPDGVISPKTCVYYTKWL 231
+P G ++ + C Y+ +WL
Sbjct: 333 RPGGPVNAENCEYFDEWL 350
>gi|326477655|gb|EGE01665.1| DNA-directed RNA polymerase III subunit RPC6 [Trichophyton equinum
CBS 127.97]
Length = 357
Score = 104 bits (259), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 68/258 (26%), Positives = 119/258 (46%), Gaps = 43/258 (16%)
Query: 15 SLTDHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVVNIHS 74
+L ERL+Y+VI S GIWT+ +K R NL I+ + +KSL+ K+ +K V N+
Sbjct: 95 NLNGEERLVYNVIHSTGRNGIWTKIIKT--RTNLHQTIMNRCLKSLEAKNYVKSVRNVKY 152
Query: 75 KGKKHLMAVEFEPSKEISGGAWYSEGSLDTEFIKVV------------------KSQCLK 116
+K M +PS+EI+GGAW+++G LD +FI+ + + Q
Sbjct: 153 PSRKIYMLSGLQPSEEITGGAWFTDGVLDADFIRGLSGWIEHWVSARSWNSPGAEDQPKG 212
Query: 117 QIIKLKV-----------------ATLEGISDSIKRSGAFKVDLTKQQIEEIVRALVLDN 159
+ KL+ T I+ +I SG V + + I ++++ L D
Sbjct: 213 KKRKLQADDSETQYIPYLSSYQGHPTTADITKAINGSGLTPVTMDEGSISQLLQMLCYDG 272
Query: 160 QIMEVKSNGSGEFTNIPVGKVCYKNVSKGGGGGEPKTGS------LASIPCGVCPQINIC 213
+++ ++ + P +++ G G GS + PCG CP ++C
Sbjct: 273 RLVSLRDGAAYRSVKKPNEISLQRDLGLQGPDGGANEGSALGSNGMTEAPCGQCPVFSLC 332
Query: 214 KPDGVISPKTCVYYTKWL 231
+P G ++ + C Y+ +WL
Sbjct: 333 RPGGPVNAENCEYFDEWL 350
>gi|66824061|ref|XP_645385.1| RNA polymerase III subunit [Dictyostelium discoideum AX4]
gi|74861297|sp|Q86JM3.1|RPC6_DICDI RecName: Full=DNA-directed RNA polymerase III subunit rpc6;
Short=RNA polymerase III subunit C6; AltName:
Full=DNA-directed RNA polymerase III subunit F
gi|60473501|gb|EAL71445.1| RNA polymerase III subunit [Dictyostelium discoideum AX4]
Length = 293
Score = 103 bits (258), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 72/246 (29%), Positives = 116/246 (47%), Gaps = 38/246 (15%)
Query: 3 KRKRPDSNAPSDSLTDHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQN 62
K P+ A L + LIY +I + + G WTR++K +TK +K+L++
Sbjct: 62 KEVNPEDQAKFRGLGVEDFLIYQLIEASSNTGAWTRELKNS--SGYQQVQITKILKTLES 119
Query: 63 KSLIKEVVNIHSKGKKHLMAVEFEPSKEISGGAWYSEGSLDTEFIKVVKSQCLKQIIKLK 122
+ LIK V +I S KK M EPS+EI+GG YS+ S D ++I+++K +K + K
Sbjct: 120 RKLIKSVKSIQSGRKKVYMLYNMEPSREITGGQLYSDQSYDHQYIQIMKMH-IKTFVDNK 178
Query: 123 VAT-LEGISDSIKRSG--AFKVDLTKQQIEEIVRALVLDNQIMEVKSNGSGEF------- 172
A L I +++ A L + I+ +V ++ D I E++ G
Sbjct: 179 GAVDLADIITYLRKVAEEATSQSLGPEDIQALVNTVIYDGDIEEMRDTRMGAMLGRRSGI 238
Query: 173 ------TNIPVGKVCYKNVSKGGGGGEPKTGSLASIPCGVCPQINICKPDGVISPKTCVY 226
T IPV C ++PCG CP +IC +G++SPK CVY
Sbjct: 239 LYKPTKTPIPVNNFC-------------------NMPCGNCPVFDICSDNGLVSPKRCVY 279
Query: 227 YTKWLD 232
+ ++L+
Sbjct: 280 FKQYLE 285
>gi|321463805|gb|EFX74818.1| hypothetical protein DAPPUDRAFT_324023 [Daphnia pulex]
Length = 245
Score = 103 bits (258), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 64/233 (27%), Positives = 114/233 (48%), Gaps = 33/233 (14%)
Query: 19 HERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVVNIHSKGKK 78
E ++ +I + GI +D++ + +NL + K +K+L+ K+LIK V++I K
Sbjct: 27 EENVVMRIIEEAGNKGILNKDIRDQSGLNL--TTINKILKALEGKNLIKSVLSISVAKIK 84
Query: 79 HLMAVEFEPSKEISGGAWYSEGSLDTEFIKVVKSQCLKQI-IKLKVATLEGISDS-IKRS 136
M + +P + ++GG+WY++G ++E + ++ QC + + K + A L+ + I R+
Sbjct: 85 VYMLFDLQPDRSVTGGSWYTDGEFESELVDIMNQQCYRMLQQKAEAAKLKAMDGPLIVRN 144
Query: 137 GAF----------------KVDLTKQQIEEIVRALVLDNQI-MEVKSNGSGEFTNIPVGK 179
+F K +LT ++IE I+ LV D +I M + S+G + +
Sbjct: 145 ASFLSSKEICQMISDMNIVKFNLTVEEIEAILETLVYDGKIEMRMVSDGDERIKTYRIVE 204
Query: 180 VCYKNVSKGGGGGEPKTGSLASIPCGVCPQINICKPDGVISPKTCVYYTKWLD 232
+ ++ IPCGVCP I C G + PK C YY +WLD
Sbjct: 205 TLL------------SSAAIVRIPCGVCPVIEKCGTTGEVQPKNCAYYDQWLD 245
>gi|255955101|ref|XP_002568303.1| Pc21g12760 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211590014|emb|CAP96173.1| Pc21g12760 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 350
Score = 103 bits (257), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 72/275 (26%), Positives = 120/275 (43%), Gaps = 71/275 (25%)
Query: 15 SLTDHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVVNIHS 74
+LT E ++Y+VI S + GIW R + R NL +I+ + +KSL+ K+ IK + N+
Sbjct: 85 NLTPDEAMVYNVIHSTERTGIWVRHIGN--RTNLHKSILDRCLKSLEGKNYIKSLHNVKY 142
Query: 75 KGKKHLMAVEFEPSKEISGGAWYSEGSLDTEFIKVVKSQCLKQII--------------K 120
+K M PS+E++GGAW+++G LD FI V + +
Sbjct: 143 PSRKMYMLAGLAPSEEVTGGAWFTDGVLDANFINSVAGYIEYTVSRKSWYEVPASDRKKR 202
Query: 121 LKVA------------------------TLEGISDSIKRSGAFKVDLTKQQIEEIVRALV 156
+K A T+ I+ ++ SG V L ++ I +++ L
Sbjct: 203 IKTASGKAEVRSDEKTYLPYPHGYTGYPTVAQITSAVNDSGITPVRLGEESIVQLLEMLC 262
Query: 157 LDNQIMEVKSNGSGEFTN---------------IPVG----KVCYKNVSKGGGGGEPKTG 197
DN+++ + G+GE+ P+ V K++ K G
Sbjct: 263 YDNKLVAL---GNGEWYRSLKNPEAVKANQSRKAPIEGDDLSVANKHLVKNG-------- 311
Query: 198 SLASIPCGVCPQINICKPDGVISPKTCVYYTKWLD 232
+ PCG CP +C P G +SP+TC Y+ WL+
Sbjct: 312 -MTEAPCGQCPVFKLCAPGGAVSPETCEYFDPWLN 345
>gi|242022647|ref|XP_002431750.1| DNA-directed RNA polymerase III subunit F, putative [Pediculus
humanus corporis]
gi|212517075|gb|EEB19012.1| DNA-directed RNA polymerase III subunit F, putative [Pediculus
humanus corporis]
Length = 315
Score = 103 bits (257), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 66/234 (28%), Positives = 111/234 (47%), Gaps = 37/234 (15%)
Query: 18 DHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVVNIHSKGK 77
+ E+++Y ++ + + GIW RD++ + NL + K +K+L+NK LIK V ++ + K
Sbjct: 99 NEEKVVYSIVEAAGNKGIWIRDIR--YQSNLLPTQLNKILKALENKKLIKAVKSVSASKK 156
Query: 78 KHLMAVEFEPSKEISGGAWYSEGSLDTEFIKVVKSQCL-----------------KQIIK 120
K M EP K ++GGAWYS+ + EF+ V+ QC +Q
Sbjct: 157 KVYMLYNLEPDKSLTGGAWYSDQDFEAEFVGVLSQQCYRFLQQKQEKLKDFNGSPRQWKN 216
Query: 121 LKVATLEGISDSIKRSGAFKVDLTKQQIEEIVRALVLDNQIMEVKSNGSGEFTNIPVGKV 180
+ A+ + + I G +V L+ + IE I+ +V D ++ + ++ + K+
Sbjct: 217 MSYASSKEVWKFISELGISRVMLSVEDIETILDTIVYDGKVEKA--------VDVDLTKI 268
Query: 181 CYKNVSKGGGGGEP--KTGSLASIPCGVCPQINICKPDGVISPKTCVYYTKWLD 232
Y+ V EP + PCGVCP C G ++PK C Y WLD
Sbjct: 269 -YRAV-------EPLLPAPGIVQTPCGVCPVYQFCGDVGSVTPKKCEYLRNWLD 314
>gi|295661418|ref|XP_002791264.1| DNA-directed RNA polymerase III subunit RPC6 [Paracoccidioides sp.
'lutzii' Pb01]
gi|226280826|gb|EEH36392.1| DNA-directed RNA polymerase III subunit RPC6 [Paracoccidioides sp.
'lutzii' Pb01]
Length = 362
Score = 103 bits (256), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 67/264 (25%), Positives = 119/264 (45%), Gaps = 49/264 (18%)
Query: 15 SLTDHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVVNIHS 74
+L ERLIY V+ S +G+WTR +K R NL IV +S+KSL+ K+ IK V N+
Sbjct: 95 NLNAEERLIYSVVESTGRVGVWTRTIKT--RTNLHQTIVNRSLKSLETKNYIKSVRNVKY 152
Query: 75 KGKKHLMAVEFEPSKEISGGAWYSEGSLDTEFIKVV---------------KSQCLKQII 119
+K M +PS++++GGAW+++G LD +FI+ + ++ ++
Sbjct: 153 PQRKMYMLSGLQPSEDVTGGAWFTDGVLDVDFIRGIGGWIEHWVSSRSWFDQAAAERKAK 212
Query: 120 KLKV---------------------ATLEGISDSIKRSGAFKVDLTKQQIEEIVRALVLD 158
+ KV T+ I+++I SG V + + I +++ L D
Sbjct: 213 RQKVRQDSSKGEPQYIPYLPSYSGYPTVTDITNAINNSGLTPVTMGESSISQLLEMLCFD 272
Query: 159 NQIMEVKSNGSGEFTNIPVGKVCYK--NVSKGGGGGEPKT---------GSLASIPCGVC 207
+++ ++ + + P + + G GE + PCG C
Sbjct: 273 GKLISLRDGAAYKSVKKPNQISLQRELGLQTGDKTGENNADQDSLTLGGNGMTEAPCGRC 332
Query: 208 PQINICKPDGVISPKTCVYYTKWL 231
P +C+ G ++ K C Y+ +WL
Sbjct: 333 PVFTLCQEGGPVNAKNCEYFDEWL 356
>gi|315051752|ref|XP_003175250.1| DNA-directed RNA polymerase III subunit RPC6 [Arthroderma gypseum
CBS 118893]
gi|311340565|gb|EFQ99767.1| DNA-directed RNA polymerase III subunit RPC6 [Arthroderma gypseum
CBS 118893]
Length = 357
Score = 102 bits (255), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 66/258 (25%), Positives = 122/258 (47%), Gaps = 43/258 (16%)
Query: 15 SLTDHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVVNIHS 74
+L ERL+Y+VI S GIWT+ +K R NL I+ + +K+L+ K+ +K V N+
Sbjct: 95 NLNGEERLVYNVIHSTGRNGIWTKIIKT--RTNLHQTIMNRCLKTLEAKNYVKSVRNVKY 152
Query: 75 KGKKHLMAVEFEPSKEISGGAWYSEGSLDTEFIKVV------------------------ 110
+K M +PS+EI+GGAW+++G LD +FI+ +
Sbjct: 153 PSRKIYMLSGLQPSEEITGGAWFTDGVLDADFIRGLSGWIEHWVSARSWNSPGAEDQPKG 212
Query: 111 ----------KSQCLKQIIKLK-VATLEGISDSIKRSGAFKVDLTKQQIEEIVRALVLDN 159
++Q + + + T I+ +I SG V + + I ++++ L D
Sbjct: 213 KKRKAQADDSETQYIPYLPSYQGHPTTADITKAINGSGLTPVTMDEGSISQLLQMLCYDG 272
Query: 160 QIMEVKSNGSGEFTNIPVGKVCYKNVS-KGGGGGEPKTGSLAS-----IPCGVCPQINIC 213
+++ ++ + P +++ +G GG ++ +L S PCG CP ++C
Sbjct: 273 RLVSLRDGAAYRSVKKPNEISLQRDLGLQGPDGGAKESSTLGSNGMTDAPCGRCPVFSLC 332
Query: 214 KPDGVISPKTCVYYTKWL 231
P G ++ + C Y+ +WL
Sbjct: 333 HPGGPVNAENCEYFDEWL 350
>gi|307174837|gb|EFN65131.1| DNA-directed RNA polymerase III subunit RPC6 [Camponotus
floridanus]
Length = 311
Score = 102 bits (255), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 69/234 (29%), Positives = 112/234 (47%), Gaps = 37/234 (15%)
Query: 18 DHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVVNIHSKGK 77
+ E+++Y +I + GIWTRD++ + NL + K +KSL+ K IK V ++ + K
Sbjct: 96 NEEKVVYKIIEEAGNKGIWTRDIR--FKSNLMHTQLKKILKSLETKKFIKVVKSVAASKK 153
Query: 78 KHLMAVEFEPSKEISGGAWYSEGSLDTEFIKVVKSQCLKQIIK----------------- 120
K M EP + I+GGAWY + +TEF+ V+ QC + + +
Sbjct: 154 KVYMLYNLEPDESITGGAWYQDQDFETEFVDVLNQQCYRFLEQKKEKTKNCNIGPVAARN 213
Query: 121 LKVATLEGISDSIKRSGAFKVDLTKQQIEEIVRALVLDNQIMEVKSNGSGEFTNIPVGKV 180
+ A+ + + I G KV L+ IE I+ LV D ++ + +G+ +N+
Sbjct: 214 MTFASSKDVWKFISDLGISKVKLSVTNIEMILNTLVYDGKVERIL---AGDGSNL----- 265
Query: 181 CYKNVSKGGGGGEPKTGS--LASIPCGVCPQINICKPDGVISPKTCVYYTKWLD 232
Y+ + EP S L PCG+CP C DG ++P C Y +WLD
Sbjct: 266 -YRAI-------EPLVISPGLIRTPCGLCPVRKHCFDDGPVTPIKCQYIREWLD 311
>gi|399217542|emb|CCF74429.1| unnamed protein product [Babesia microti strain RI]
Length = 296
Score = 102 bits (255), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 70/222 (31%), Positives = 119/222 (53%), Gaps = 21/222 (9%)
Query: 14 DSLTDHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSL-QNKSLIKEVVNI 72
D L D + +Y I ++GIWT D+++ L + V K+IK L + K LIK V +I
Sbjct: 87 DKLDDVDYRVYCAIEQAGNVGIWTADIRK--FTGLLIHQVQKAIKMLAEEKGLIKPVKDI 144
Query: 73 HSKGKKHLMAVEFEPSKEISGGAWYSEGSLDTEFIKVVKSQCLKQIIKLKVATLEGISDS 132
H K +K M E +P+ EI+GG++YS G D ++ ++ Q + ++K + +T+E I+
Sbjct: 145 HHKNRKLYMLAEIDPAVEIAGGSFYSNGDFDESLVETLRDQISRFLMKFQGSTIEKITQY 204
Query: 133 IKRSGAFKVD-LTKQQIEEIVRALVLDNQIMEVKSNGSGEFTNIPVGKVCYKNVSKGGGG 191
IK F D ++++ IE+IV+ L+L+N K+ + N + C G
Sbjct: 205 IK---GFVCDKVSQEDIEKIVQILILEN-----KAYSAISANNTMIYIWC------GDAQ 250
Query: 192 GEPKTGSLASIPCGVCPQINICKPDGV--ISPKTCVYYTKWL 231
E T S ++PC CP ++ C+ D + ++P C+Y +WL
Sbjct: 251 LETLTYSY-NVPCFTCPLLDQCEIDRLYKVNPGDCIYLNEWL 291
>gi|358374565|dbj|GAA91156.1| DNA-directed RNA polymerase III subunit Rpc34 [Aspergillus kawachii
IFO 4308]
Length = 355
Score = 102 bits (254), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 72/275 (26%), Positives = 118/275 (42%), Gaps = 72/275 (26%)
Query: 16 LTDHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVVNIHSK 75
L+ E L+Y+VI S GIW R + R NL +I+ + +KSL+ KS IK V N+
Sbjct: 90 LSPDESLVYNVIHSTGRSGIWVRAIGN--RTNLHKSILDRCLKSLETKSYIKSVHNVKFP 147
Query: 76 GKKHLMAVEFEPSKEISGGAWYSEGSLDTEFIKVVKSQCLKQII---------------- 119
+K M PS++++GGAW+++G LD FI V +
Sbjct: 148 SRKMYMLANLAPSEDVTGGAWFTDGVLDENFINSVAGFIEYSVSRKSWYEAPSSDGPRNK 207
Query: 120 KLKVA--------------------------TLEGISDSIKRSGAFKVDLTKQQIEEIVR 153
++K A T+ ++ ++ SG V L ++ I +++
Sbjct: 208 RMKTADGGVAVKQEGAPKEYLPFPAGYQGYPTIPQLTAAVNESGITPVRLGEESITQLLE 267
Query: 154 ALVLDNQIMEVKSNGSGEFTNIPVGKVCYKNVS-----KGGGGGEPKT-----------G 197
L DN+++ + +GEF YK+V K +P+T
Sbjct: 268 MLCYDNKLVSLN---NGEF---------YKSVKNPEQVKSQQARKPRTDDAGIDDRLVKN 315
Query: 198 SLASIPCGVCPQINICKPDGVISPKTCVYYTKWLD 232
+ PCG CP +C P G +SP++C Y+ WL+
Sbjct: 316 GMTEAPCGNCPVFKLCAPGGAVSPESCEYFDPWLE 350
>gi|323447055|gb|EGB03019.1| hypothetical protein AURANDRAFT_34609 [Aureococcus anophagefferens]
gi|323454934|gb|EGB10803.1| hypothetical protein AURANDRAFT_77764 [Aureococcus anophagefferens]
Length = 297
Score = 102 bits (253), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 63/237 (26%), Positives = 120/237 (50%), Gaps = 20/237 (8%)
Query: 1 MSKRKRPDSNAPSDS-LTDHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKS 59
++ R R + A S LT+ + L+ V+ ++ G+W RD+K ++ + K++K
Sbjct: 61 LTYRLRDKAQAEKLSELTNEQLLVLQVVERAENAGVWLRDIKNA--TSMQQQTLNKALKV 118
Query: 60 LQNKSLIKEVVNIHSKGKKHLMAVEFEPSKEISGGAWYSEGSLDTEFIKVVKSQCLKQII 119
L+++ L+K V ++ K KK MA + P++E+SGG WY++ D EF+ +K +K +
Sbjct: 119 LESRKLVKTVKSVQQKTKKLYMAYDLVPTREVSGGPWYTDQEFDHEFVGAIKKIVVKYVQ 178
Query: 120 KLKVATLEGISDSIKRSGAFKVDLTKQQIEEIVRALVLDNQIMEVKSNGSGEFTNIPVG- 178
++ +TL+ I +++RSG V L+ ++ ++ L+ D+++ EFT +
Sbjct: 179 SVQTSTLDEIHGALERSGIATVPLSVADVKLVIDTLLCDSKL--------EEFTAVTAAS 230
Query: 179 KVCYKNVSKGGGGGEPKTGSLASIPCGVCPQI---NICKPDGVISPKTCVYYTKWLD 232
K ++K + +P G P+ C DG +P +C Y KWL+
Sbjct: 231 KASRYKIAKPA----VDVAWVGEVPAGCVPEAPGRRYC-ADGRHAPASCQYLQKWLE 282
>gi|213407148|ref|XP_002174345.1| DNA-directed RNA polymerase III subunit RPC6 [Schizosaccharomyces
japonicus yFS275]
gi|212002392|gb|EEB08052.1| DNA-directed RNA polymerase III subunit RPC6 [Schizosaccharomyces
japonicus yFS275]
Length = 301
Score = 102 bits (253), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 67/232 (28%), Positives = 114/232 (49%), Gaps = 38/232 (16%)
Query: 20 ERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVVNIHSKGKKH 79
E+++Y+ I+ + GIWT+ +K ++ NL +V + +KSL++K+L+K + ++ +K
Sbjct: 87 EQIVYNFIKGSGNEGIWTKTLK--MKTNLHMTVVNRCLKSLESKNLVKSIKSVKHPTRKI 144
Query: 80 LMAVEFEPSKEISGGAWYSEGSLDTEFIKVVKSQCLKQIIK--------------LKVAT 125
M + PS EI+GG W+++ LD EFI +K K I L
Sbjct: 145 YMLYDLAPSSEITGGPWFTDQELDIEFINNLKKVVYKYIHSKSYPSKKNHKGSDLLWSVD 204
Query: 126 LEG------ISDSIKRSGAFKVDLTKQQIEEIVRALVLDNQIMEVKSNGSGEFTNIPVGK 179
G I D ++ + +VDL+ + +V LV D ++ E + +G+
Sbjct: 205 YNGYPSAIQIHDWLRSTNITEVDLSLANVMSLVDVLVYDGKV-EKRPDGT---------- 253
Query: 180 VCYKNVSKGGGGGEPKTGSLASIPCGVCPQINICKPDGVISPKTCVYYTKWL 231
++ V + G + T S PCG CP ++C DG +SP TC Y+ KWL
Sbjct: 254 -TFRAVRQVEGTIDGYTES----PCGKCPLNDVCAVDGPVSPMTCEYFDKWL 300
>gi|156551159|ref|XP_001604309.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC6-like
[Nasonia vitripennis]
Length = 305
Score = 102 bits (253), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 71/253 (28%), Positives = 112/253 (44%), Gaps = 39/253 (15%)
Query: 1 MSKRKRPDSNAPSDSLTDHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSL 60
+ K K P + + ER++Y +I + GIWTRD++ + NL + K +KSL
Sbjct: 72 LYKLKDPTKARTAKGADNEERIVYTIIEEAGNKGIWTRDIR--FKSNLMPTQLNKILKSL 129
Query: 61 QNKSLIKEVVNIHSKGKKHLMAVEFEPSKEISGGAWYSEGSLDTEFIKVVKSQCLKQIIK 120
+ K +IK V ++ + KK M EP + ++GGAWY + + EF+ V+ QC + + +
Sbjct: 130 ETKKIIKAVKSVAASKKKVFMLYNLEPDRSVTGGAWYQDQDFEAEFVDVLNQQCYRFLEQ 189
Query: 121 LKVATLEGISDSIKRSGAF-----------------KVDLTKQQIEEIVRALVLDNQIME 163
+ +T I+ I A KV L+ + +E I+ L+ D ++
Sbjct: 190 KRESTKNYINGPIAEKNATFASSKEVWKFISDLGISKVKLSVEDLEMILNTLIYDGKVER 249
Query: 164 -VKSNGSGEFTNIPVGKVCYKNVSKGGGGGEPKTGS--LASIPCGVCPQINICKPDGVIS 220
V S+GS + I P S L CGVCP C G +
Sbjct: 250 TVSSDGSSLYRAI-----------------NPLLNSPGLVQSSCGVCPVRKNCCDFGDTT 292
Query: 221 PKTCVYYTKWLDF 233
P C Y T+WLD
Sbjct: 293 PLKCQYITEWLDM 305
>gi|296422853|ref|XP_002840973.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295637200|emb|CAZ85164.1| unnamed protein product [Tuber melanosporum]
Length = 303
Score = 102 bits (253), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 65/237 (27%), Positives = 103/237 (43%), Gaps = 38/237 (16%)
Query: 15 SLTDHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVVNIHS 74
++T E L+Y I+ GIWT+ +K ++ N+ V K++K L+ K IK + +++
Sbjct: 85 NMTPDEELLYGYIQESAREGIWTKQLK--IKSNMHSTAVNKALKGLERKKFIKSIKSVNH 142
Query: 75 KGKKHLMAVEFEPSKEISGGAWYSEGSLDTEFIK-----VVKSQCLKQIIKLKV------ 123
+ M E PS E++GG W+++ LD EF+ + K K KL
Sbjct: 143 PARNIYMLYELTPSIEVTGGPWFTDSELDKEFVNELLTAITKFMVSKSFPKLPARGVIGS 202
Query: 124 --------ATLEGISDSIKRSGAFKVDLTKQQIEEIVRALVLDNQIMEVKSNGSGEFTNI 175
TL + +K S +VDL + I ++ LV D +I V
Sbjct: 203 FPPGYTGYPTLNQVYLWVKSSNLTEVDLAEADIRSLLDVLVYDGKIERV----------- 251
Query: 176 PVGKVCYKNVSKGGGGGEPKTGSLASIPCGVCPQINICKPDGVISPKTCVYYTKWLD 232
VG + Y+ V + PCG CP +CK G +S CVY+ WL+
Sbjct: 252 -VGGMAYRAVRRPDS-----INGFTESPCGRCPVFTLCKEGGPVSASNCVYFEDWLN 302
>gi|330802412|ref|XP_003289211.1| hypothetical protein DICPUDRAFT_88404 [Dictyostelium purpureum]
gi|325080698|gb|EGC34242.1| hypothetical protein DICPUDRAFT_88404 [Dictyostelium purpureum]
Length = 293
Score = 102 bits (253), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 71/243 (29%), Positives = 115/243 (47%), Gaps = 39/243 (16%)
Query: 7 PDSNAPSDSLTDHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLI 66
P+ L + LIY +I + + G WTR++K++ +TK +K L+N+ LI
Sbjct: 66 PEDQMKFRGLGAEDFLIYQLIETSGNNGAWTRELKQQ--SGYQQVQITKILKILENRKLI 123
Query: 67 KEVVNIHSKGKKHLMAVEFEPSKEISGGAWYS-EGSLDTEFIKVVKSQCLKQIIKLKVAT 125
K V +I S KK M EPS++++GG Y + S D ++I+++K +K ++ K A
Sbjct: 124 KAVKSIQSGRKKVYMLYNMEPSRDVTGGTLYGGDQSYDHQYIQIMKMH-IKTFVENKGAV 182
Query: 126 -LEGISDSIKRSG--AFKVDLTKQQIEEIVRALVLDNQIMEVKSNGSGEF---------- 172
L I +++ A L + I+ +V ++ D I E++ G
Sbjct: 183 DLSDIMTYLRKVAEEATSQSLGPEDIQALVNTVIYDGDIEEMRDTRMGALMGRRSGILYK 242
Query: 173 ---TNIPVGKVCYKNVSKGGGGGEPKTGSLASIPCGVCPQINICKPDGVISPKTCVYYTK 229
T+IPV C ++PCG CP IC DG+ISPK CVY+ +
Sbjct: 243 PTKTSIPVNNFC-------------------NMPCGNCPVFEICSDDGIISPKKCVYFQQ 283
Query: 230 WLD 232
+LD
Sbjct: 284 FLD 286
>gi|258575987|ref|XP_002542175.1| conserved hypothetical protein [Uncinocarpus reesii 1704]
gi|237902441|gb|EEP76842.1| conserved hypothetical protein [Uncinocarpus reesii 1704]
Length = 361
Score = 101 bits (252), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 68/263 (25%), Positives = 118/263 (44%), Gaps = 48/263 (18%)
Query: 15 SLTDHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVVNIHS 74
+L ER++Y+VI S G+WT+ +K R NL I+ + +KSL+ K+ IK V N+
Sbjct: 95 NLNAEERMVYNVIHSTGRQGVWTKTIKA--RTNLHQTIMNRCLKSLEAKNYIKSVRNVKY 152
Query: 75 KGKKHLMAVEFEPSKEISGGAWYSEGSLDTEFIKVV-----------------KSQCLKQ 117
+K M +PS+E++GGAW+++G LD +FI + K+ K+
Sbjct: 153 PQRKIYMLAGLQPSEEVTGGAWFTDGILDADFIHSLGVWIERWISARSWHDTEKADRQKK 212
Query: 118 IIKLKVA-------------------TLEGISDSIKRSGAFKVDLTKQQIEEIVRALVLD 158
KL A T+ I+ +I SG V L + I +++ L D
Sbjct: 213 KRKLDEASKPTEPQYLPYLPTYTGYPTVTDITKAINASGLTPVTLGEGSIAQLLEMLCYD 272
Query: 159 NQIMEVKSNGSGEFTNIPVGKVCYKNVSKGGGGGEPKT----------GSLASIPCGVCP 208
+++ ++ + + P + + G G + T + +PCG CP
Sbjct: 273 GRLVSLRDGAAYKSVKKPNQISLQRELGFQGPGADKGTSDQDQLALGSNGMTEVPCGRCP 332
Query: 209 QINICKPDGVISPKTCVYYTKWL 231
++C G I+ + C Y+ +WL
Sbjct: 333 VFSLCHEGGPINAENCEYFQEWL 355
>gi|134079876|emb|CAK41008.1| unnamed protein product [Aspergillus niger]
Length = 366
Score = 101 bits (252), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 73/276 (26%), Positives = 119/276 (43%), Gaps = 73/276 (26%)
Query: 16 LTDHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVVNIHSK 75
L+ E L+Y+VI S GIW R + R NL +I+ + +KSL+++S IK V N+
Sbjct: 100 LSPDESLVYNVIHSTGRSGIWVRAIGN--RTNLHKSILDRCLKSLESRSYIKSVHNVKFP 157
Query: 76 GKKHLMAVEFEPSKEISGGAWYSEGSLDTEFIKVVK------------------------ 111
+K M PS++++GGAW+++G LD FI V
Sbjct: 158 SRKMYMLANLAPSEDVTGGAWFTDGVLDENFINSVAGFIEYSVSRKSWYEAPSSSDGPRN 217
Query: 112 --------SQCLKQIIKLK-----------VATLEGISDSIKRSGAFKVDLTKQQIEEIV 152
S +KQ K T+ ++ ++ SG V L ++ I +++
Sbjct: 218 KRMKTADGSLAVKQEGAPKEYLPFPAGYQGYPTIPMLTAAVNESGITPVRLGEESITQLL 277
Query: 153 RALVLDNQIMEVKSNGSGEFTNIPVGKVCYKNVS-----KGGGGGEPKT----------- 196
L DN+++ + +GEF YK+V K +P+T
Sbjct: 278 EMLCYDNKLVSLN---NGEF---------YKSVKNPEQVKSQQARKPRTDDAGIDDRLVK 325
Query: 197 GSLASIPCGVCPQINICKPDGVISPKTCVYYTKWLD 232
+ PCG CP +C P G +SP++C Y+ WL+
Sbjct: 326 NGMTEAPCGNCPVFKLCAPGGAVSPESCEYFDPWLE 361
>gi|317033273|ref|XP_001395167.2| DNA-directed RNA polymerase III subunit Rpc34 [Aspergillus niger
CBS 513.88]
gi|350637586|gb|EHA25943.1| hypothetical protein ASPNIDRAFT_190142 [Aspergillus niger ATCC
1015]
Length = 356
Score = 101 bits (252), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 73/276 (26%), Positives = 119/276 (43%), Gaps = 73/276 (26%)
Query: 16 LTDHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVVNIHSK 75
L+ E L+Y+VI S GIW R + R NL +I+ + +KSL+++S IK V N+
Sbjct: 90 LSPDESLVYNVIHSTGRSGIWVRAIGN--RTNLHKSILDRCLKSLESRSYIKSVHNVKFP 147
Query: 76 GKKHLMAVEFEPSKEISGGAWYSEGSLDTEFIKVVK------------------------ 111
+K M PS++++GGAW+++G LD FI V
Sbjct: 148 SRKMYMLANLAPSEDVTGGAWFTDGVLDENFINSVAGFIEYSVSRKSWYEAPSSSDGPRN 207
Query: 112 --------SQCLKQIIKLK-----------VATLEGISDSIKRSGAFKVDLTKQQIEEIV 152
S +KQ K T+ ++ ++ SG V L ++ I +++
Sbjct: 208 KRMKTADGSLAVKQEGAPKEYLPFPAGYQGYPTIPMLTAAVNESGITPVRLGEESITQLL 267
Query: 153 RALVLDNQIMEVKSNGSGEFTNIPVGKVCYKNVS-----KGGGGGEPKT----------- 196
L DN+++ + +GEF YK+V K +P+T
Sbjct: 268 EMLCYDNKLVSLN---NGEF---------YKSVKNPEQVKSQQARKPRTDDAGIDDRLVK 315
Query: 197 GSLASIPCGVCPQINICKPDGVISPKTCVYYTKWLD 232
+ PCG CP +C P G +SP++C Y+ WL+
Sbjct: 316 NGMTEAPCGNCPVFKLCAPGGAVSPESCEYFDPWLE 351
>gi|169782002|ref|XP_001825464.1| DNA-directed RNA polymerase III subunit Rpc34 [Aspergillus oryzae
RIB40]
gi|83774206|dbj|BAE64331.1| unnamed protein product [Aspergillus oryzae RIB40]
Length = 355
Score = 101 bits (251), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 71/267 (26%), Positives = 113/267 (42%), Gaps = 54/267 (20%)
Query: 15 SLTDHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVVNIHS 74
+L+ E L+Y+VI S GIW R + R L +I+ + +KSL+ K+ IK V N+
Sbjct: 89 NLSPDESLVYNVIHSTGRNGIWVRAIGT--RTGLHKSILDRCLKSLEGKNYIKSVHNVKF 146
Query: 75 KGKKHLMAVEFEPSKEISGGAWYSEGSLDTEFIKVVK----------------------- 111
+K M PS++++GGAW+++G LD FI V
Sbjct: 147 PSRKMYMLAGLAPSEDVTGGAWFTDGVLDENFINTVAGYIEYTVSRKSWVEVPSADAHRT 206
Query: 112 --------SQCLKQIIKLKV-----------ATLEGISDSIKRSGAFKVDLTKQQIEEIV 152
S +KQ K T+ ++D++ SG V L ++ I +++
Sbjct: 207 KRIKTSDGSVSVKQEAGQKTFIPFPAGYRGYPTVSMLTDAVNESGITPVRLGEESITQLL 266
Query: 153 RALVLDNQIMEVKSNGSGEFTNIPVGKVCYKNVSKGGGGGEPK-------TGSLASIPCG 205
L D +++ + SGE K GE K T + PCG
Sbjct: 267 DMLCYDGKLVALN---SGEMYKSVKNPEAVKQSQARKPAGEDKGIDDRLVTNGMTEAPCG 323
Query: 206 VCPQINICKPDGVISPKTCVYYTKWLD 232
CP +C P G +SP++C Y+ WL+
Sbjct: 324 TCPVFKLCAPGGAVSPESCEYFDPWLE 350
>gi|238498852|ref|XP_002380661.1| DNA-directed RNA polymerase III subunit Rpc34, putative
[Aspergillus flavus NRRL3357]
gi|220693935|gb|EED50280.1| DNA-directed RNA polymerase III subunit Rpc34, putative
[Aspergillus flavus NRRL3357]
gi|391868106|gb|EIT77329.1| RNA polymerase III, subunit C34 [Aspergillus oryzae 3.042]
Length = 355
Score = 101 bits (251), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 71/267 (26%), Positives = 113/267 (42%), Gaps = 54/267 (20%)
Query: 15 SLTDHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVVNIHS 74
+L+ E L+Y+VI S GIW R + R L +I+ + +KSL+ K+ IK V N+
Sbjct: 89 NLSPDESLVYNVIHSTGRNGIWVRAIGT--RTGLHKSILDRCLKSLEGKNYIKSVHNVKF 146
Query: 75 KGKKHLMAVEFEPSKEISGGAWYSEGSLDTEFIKVVK----------------------- 111
+K M PS++++GGAW+++G LD FI V
Sbjct: 147 PSRKMYMLAGLAPSEDVTGGAWFTDGVLDENFINTVAGYIEYTVSRKSWFEVPSADAHRT 206
Query: 112 --------SQCLKQIIKLKV-----------ATLEGISDSIKRSGAFKVDLTKQQIEEIV 152
S +KQ K T+ ++D++ SG V L ++ I +++
Sbjct: 207 KRIKTSDGSVSVKQEAGQKTFIPFPAGYRGYPTVSMLTDAVNESGITPVRLGEESITQLL 266
Query: 153 RALVLDNQIMEVKSNGSGEFTNIPVGKVCYKNVSKGGGGGEPK-------TGSLASIPCG 205
L D +++ + S GE K GE K T + PCG
Sbjct: 267 DMLCYDGKLVALNS---GEMYKSVKNPEAVKQSQARKPAGEDKGIDDRLVTNGMTEAPCG 323
Query: 206 VCPQINICKPDGVISPKTCVYYTKWLD 232
CP +C P G +SP++C Y+ WL+
Sbjct: 324 TCPVFKLCAPGGAVSPESCEYFDPWLE 350
>gi|195053568|ref|XP_001993698.1| GH19703 [Drosophila grimshawi]
gi|193895568|gb|EDV94434.1| GH19703 [Drosophila grimshawi]
Length = 294
Score = 101 bits (251), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 66/251 (26%), Positives = 118/251 (47%), Gaps = 40/251 (15%)
Query: 2 SKRKRPDSNAPSDSLTDHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQ 61
+K + S P D+ + E+++Y ++ + GIW RD++ ++ NL + K +K+L+
Sbjct: 64 AKDPQKKSALPKDA-DNEEKIVYSIVEEGGNKGIWIRDIR--IKSNLNMTQLNKILKNLE 120
Query: 62 NKSLIKEVVNIHSKGKKHLMAVEFEPSKEISGGAWYSEGSLDTEFIKVVKSQCLK----- 116
K LIK V ++++ KK M E + ++GGAWY + + EF+ V+ QCL+
Sbjct: 121 TKKLIKAVKSVNASKKKVYMLYNMEADRSVTGGAWYQDQDFEVEFVDVLNQQCLRFLQMK 180
Query: 117 ------------QIIKLKVATLEGISDSIKRSGAFKVDLTKQQIEEIVRALVLDNQIMEV 164
++ T++ + I G KV+L + +E I++ +V D +
Sbjct: 181 REGAEKKRDGPLAFKQMSCCTVKEVHKFISDLGISKVNLDEDDLETILKTVVYDGNAERI 240
Query: 165 -KSNGSGEF--TNIPVGKVCYKNVSKGGGGGEPKTGSLASIPCGVCPQINICKPDGVISP 221
+S+G+ + N+P+ P G L +PCG+CP I C G ++
Sbjct: 241 LQSDGTYVYRAVNLPL----------------PAPG-LVQMPCGICPVIKNCSNCGDVTA 283
Query: 222 KTCVYYTKWLD 232
C Y WLD
Sbjct: 284 INCQYMNDWLD 294
>gi|345565560|gb|EGX48509.1| hypothetical protein AOL_s00080g138 [Arthrobotrys oligospora ATCC
24927]
Length = 300
Score = 100 bits (250), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 64/238 (26%), Positives = 110/238 (46%), Gaps = 38/238 (15%)
Query: 15 SLTDHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVVNIHS 74
+LT E L+Y I S GIW++ +K R NL ++T+ +K+L+ IK + ++
Sbjct: 77 NLTPDEALVYQHIESAAREGIWSKTLKA--RTNLHPTVLTRCLKTLETHRYIKSIKSVKF 134
Query: 75 KGKKHLMAVEFEPSKEISGGAWYSEGSLDTEFIKVV----------------KSQCLKQI 118
+K M + P+ E++GG W+++ LD +FI + K +
Sbjct: 135 PTRKIYMLWDLTPTIEVTGGPWFTDAELDADFINALLVAIERFVTARSFPKQKPGVAGMV 194
Query: 119 IKLKVA-----TLEGISDSIKRSGAFKVDLTKQQIEEIVRALVLDNQIMEVKSNGSGEFT 173
+ + TL I+ +K S +V+L++ I+ ++ L+ D ++ V
Sbjct: 195 VVFEAGYTGYPTLSDITQWVKNSNLTEVELSEADIKALLEVLIYDGKLERV--------- 245
Query: 174 NIPVGKVCYKNVSKGGGGGEPKTGSLASIPCGVCPQINICKPDGVISPKTCVYYTKWL 231
+G YK + K G K G + PCG CP ++C DG I+ CVY+ KWL
Sbjct: 246 ---IGGTAYKAIRKVEGA--VKQG-VTEAPCGRCPVFDLCNEDGPINAANCVYFEKWL 297
>gi|195112652|ref|XP_002000886.1| GI22278 [Drosophila mojavensis]
gi|193917480|gb|EDW16347.1| GI22278 [Drosophila mojavensis]
Length = 293
Score = 100 bits (249), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 64/244 (26%), Positives = 115/244 (47%), Gaps = 40/244 (16%)
Query: 9 SNAPSDSLTDHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKE 68
S P D+ + E+++Y ++ + GIW RD++ ++ NL + K +K+L+ K LIK
Sbjct: 70 SALPKDA-DNEEKVVYSIVEEGGNKGIWIRDIR--MKSNLNMTQLNKILKNLETKKLIKA 126
Query: 69 VVNIHSKGKKHLMAVEFEPSKEISGGAWYSEGSLDTEFIKVVKSQCLK------------ 116
V ++++ KK M E + ++GGAWY + + EF+ V+ QCL+
Sbjct: 127 VKSVNASKKKVYMLYNLEADRSVTGGAWYQDQDFEVEFVDVLNQQCLRFLQMKRESAEKK 186
Query: 117 -----QIIKLKVATLEGISDSIKRSGAFKVDLTKQQIEEIVRALVLDNQIMEV-KSNGSG 170
++ T++ + I G KV+L + +E I++ +V D + +S+G+
Sbjct: 187 RDGPLAFKQMSCCTVKEVHKFISDLGISKVNLDEDDLETILKTVVYDGNAERILQSDGTY 246
Query: 171 EF--TNIPVGKVCYKNVSKGGGGGEPKTGSLASIPCGVCPQINICKPDGVISPKTCVYYT 228
+ N+P+ P G +PCG+CP I C G ++ C Y
Sbjct: 247 VYRAVNLPL----------------PAPG-FVQMPCGICPVIKNCSNCGDVTAINCQYMN 289
Query: 229 KWLD 232
+WLD
Sbjct: 290 EWLD 293
>gi|195390233|ref|XP_002053773.1| GJ24071 [Drosophila virilis]
gi|194151859|gb|EDW67293.1| GJ24071 [Drosophila virilis]
Length = 293
Score = 99.8 bits (247), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 67/248 (27%), Positives = 115/248 (46%), Gaps = 34/248 (13%)
Query: 2 SKRKRPDSNAPSDSLTDHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQ 61
+K + S P D+ + E+++Y ++ + GIW RD++ ++ NL + K +K+L+
Sbjct: 63 AKDPQKKSALPKDA-DNEEKIVYSIVEEGGNKGIWIRDIR--MKSNLNMTQLNKILKNLE 119
Query: 62 NKSLIKEVVNIHSKGKKHLMAVEFEPSKEISGGAWYSEGSLDTEFIKVVKSQCLK----- 116
K LIK V ++++ KK M E + ++GGAWY + + EF+ V+ QCL+
Sbjct: 120 TKKLIKAVKSVNASKKKVYMLYNMEADRSVTGGAWYQDQDFEVEFVDVLNQQCLRFLQMK 179
Query: 117 ------------QIIKLKVATLEGISDSIKRSGAFKVDLTKQQIEEIVRALVLDNQIMEV 164
++ T++ + I G KV+L + +E I++ +V D
Sbjct: 180 REGAEKKRDGPLAFKQMSCCTVKEVHKFISDLGISKVNLDEDDLETILKTVVYD------ 233
Query: 165 KSNGSGEFTNIPVGKVCYKNVSKGGGGGEPKTGSLASIPCGVCPQINICKPDGVISPKTC 224
GS E G Y+ V+ P G L +PCG+CP I C G ++ C
Sbjct: 234 ---GSAERILQSDGTYVYRAVNL----PLPAPG-LVQMPCGICPVIKNCSNCGDVTAINC 285
Query: 225 VYYTKWLD 232
Y WL+
Sbjct: 286 QYMNDWLE 293
>gi|225562662|gb|EEH10941.1| conserved hypothetical protein [Ajellomyces capsulatus G186AR]
Length = 363
Score = 99.4 bits (246), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 66/272 (24%), Positives = 117/272 (43%), Gaps = 64/272 (23%)
Query: 15 SLTDHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVVNIHS 74
+L ERLIY V+ S G+WTR +K R NL IV + +KSL+ K+ IK V N+
Sbjct: 95 NLNAEERLIYSVVESTGRSGVWTRTIKS--RTNLHQTIVNRCLKSLETKNYIKSVRNVKY 152
Query: 75 KGKKHLMAVEFEPSKEISGGAWYSEGSLDTEFIK-------------------VVKSQCL 115
+K M +PS++++GGAW+++G LD++FI+ + +
Sbjct: 153 PQRKMYMLSGLQPSEDVTGGAWFTDGVLDSDFIRGLGGWIEHWVSSRSWYDRGAAERKAK 212
Query: 116 KQIIKLK------------------VATLEGISDSIKRSGAFKVDLTKQQIEEIVRALVL 157
+Q I+ T+ I+++I SG V + + I +++ L
Sbjct: 213 RQKIRPDNNTKGEPQYLPYLPSYNGYPTVSDITNAINNSGLTPVTMGESSIAQLLEMLCF 272
Query: 158 DNQIMEVKSNGSGEFTNIP------------------VGKVCYKNVSKGGGGGEPKTGSL 199
D +++ ++ + + P K N++ GG G +
Sbjct: 273 DGKLISLRDGAAYKSVKKPHQISLQRDLGLQTSDQTDQDKADQDNLTLGGNG-------M 325
Query: 200 ASIPCGVCPQINICKPDGVISPKTCVYYTKWL 231
PCG CP +C+ G ++ + C Y+ W+
Sbjct: 326 TEAPCGRCPVFALCEEGGPVNAENCEYFDAWI 357
>gi|154279638|ref|XP_001540632.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
gi|150412575|gb|EDN07962.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
Length = 363
Score = 99.4 bits (246), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 66/272 (24%), Positives = 117/272 (43%), Gaps = 64/272 (23%)
Query: 15 SLTDHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVVNIHS 74
+L ERLIY V+ S G+WTR +K R NL IV + +KSL+ K+ IK V N+
Sbjct: 95 NLNAEERLIYSVVESTGRSGVWTRTIKS--RTNLHQTIVNRCLKSLETKNYIKSVRNVKY 152
Query: 75 KGKKHLMAVEFEPSKEISGGAWYSEGSLDTEFIK-------------------VVKSQCL 115
+K M +PS++++GGAW+++G LD++FI+ + +
Sbjct: 153 PQRKMYMLSGLQPSEDVTGGAWFTDGVLDSDFIRGLGGWIEHWVSSRSWYDRGAAERKAK 212
Query: 116 KQIIKLK------------------VATLEGISDSIKRSGAFKVDLTKQQIEEIVRALVL 157
+Q I+ T+ I+++I SG V + + I +++ L
Sbjct: 213 RQKIRPDNNTKGEPQYLPYLPSYNGYPTVSDITNAINNSGLTPVTMGESSIAQLLEMLCF 272
Query: 158 DNQIMEVKSNGSGEFTNIP------------------VGKVCYKNVSKGGGGGEPKTGSL 199
D +++ ++ + + P K N++ GG G +
Sbjct: 273 DGKLISLRDGAAYKSVKKPNQISLQRDLGLQTGDQTDQDKADQDNLTLGGNG-------M 325
Query: 200 ASIPCGVCPQINICKPDGVISPKTCVYYTKWL 231
PCG CP +C+ G ++ + C Y+ W+
Sbjct: 326 TEAPCGRCPVFALCEEGGPVNAENCEYFDAWI 357
>gi|67904276|ref|XP_682394.1| hypothetical protein AN9125.2 [Aspergillus nidulans FGSC A4]
gi|40742768|gb|EAA61958.1| hypothetical protein AN9125.2 [Aspergillus nidulans FGSC A4]
gi|259485459|tpe|CBF82499.1| TPA: DNA-directed RNA polymerase III subunit Rpc34, putative
(AFU_orthologue; AFUA_7G01850) [Aspergillus nidulans
FGSC A4]
Length = 359
Score = 99.4 bits (246), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 66/268 (24%), Positives = 116/268 (43%), Gaps = 56/268 (20%)
Query: 15 SLTDHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVVNIHS 74
+L+ E L+Y+VI S GIW R ++ R NL +I+ + +KSL+ K+ IK V N+
Sbjct: 89 NLSPDESLVYNVIHSTGRSGIWVRAIQN--RTNLHKSILDRCLKSLEGKNYIKSVHNVKF 146
Query: 75 KGKKHLMAVEFEPSKEISGGAWYSEGSLDTEFIKVVKSQCLKQIIK-------------- 120
+K M PS++++GGAW+++G LD FI VV + K
Sbjct: 147 PSRKMYMLAGLAPSEDVTGGAWFTDGVLDENFIGVVSGFIEFSVSKKSWYEVPASDKSRH 206
Query: 121 --LKVA----------------------------TLEGISDSIKRSGAFKVDLTKQQIEE 150
LK A T+ ++ ++ +SG V L ++ + +
Sbjct: 207 KRLKTADGSAATTVKKEGSQKEYLPYPPGYTGYPTIAMLTAAVNQSGITPVRLGEESVTQ 266
Query: 151 IVRALVLDNQIMEVKSNGSGEF-------TNIPVGKVCYKNVSKGGGGGEPKTGSLASIP 203
++ L DN+++ + +GE+ + + + + +P
Sbjct: 267 LLEMLCYDNKLVALN---NGEYYKSLKNPEEVKARQARKPDEELAAADDRLVRNGMTEVP 323
Query: 204 CGVCPQINICKPDGVISPKTCVYYTKWL 231
CG CP N+C P G +SP+ C Y+ W+
Sbjct: 324 CGNCPVFNLCVPGGAVSPENCEYFETWI 351
>gi|325092598|gb|EGC45908.1| DNA-directed RNA polymerase III [Ajellomyces capsulatus H88]
Length = 363
Score = 99.4 bits (246), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 66/272 (24%), Positives = 117/272 (43%), Gaps = 64/272 (23%)
Query: 15 SLTDHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVVNIHS 74
+L ERLIY V+ S G+WTR +K R NL IV + +KSL+ K+ IK V N+
Sbjct: 95 NLNAEERLIYSVVESTGRSGVWTRTIKS--RTNLHQTIVNRCLKSLETKNYIKSVRNVKY 152
Query: 75 KGKKHLMAVEFEPSKEISGGAWYSEGSLDTEFIK-------------------VVKSQCL 115
+K M +PS++++GGAW+++G LD++FI+ + +
Sbjct: 153 PQRKMYMLSGLQPSEDVTGGAWFTDGVLDSDFIRGLGGWIEHWVSSRSWYDRGAAERKAK 212
Query: 116 KQIIKLK------------------VATLEGISDSIKRSGAFKVDLTKQQIEEIVRALVL 157
+Q I+ T+ I+++I SG V + + I +++ L
Sbjct: 213 RQKIRPDNNTKGEPQYLPYLPSYNGYPTVSDITNAINNSGLTPVTMGESSIAQLLEMLCF 272
Query: 158 DNQIMEVKSNGSGEFTNIP------------------VGKVCYKNVSKGGGGGEPKTGSL 199
D +++ ++ + + P K N++ GG G +
Sbjct: 273 DGKLISLRDGAAYKSVKKPHQISLQRDLGLQTGDQTDQDKADQDNLTLGGNG-------M 325
Query: 200 ASIPCGVCPQINICKPDGVISPKTCVYYTKWL 231
PCG CP +C+ G ++ + C Y+ W+
Sbjct: 326 TEAPCGRCPVFALCEEGGPVNAENCEYFDAWI 357
>gi|322791297|gb|EFZ15814.1| hypothetical protein SINV_06955 [Solenopsis invicta]
Length = 306
Score = 99.4 bits (246), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 67/234 (28%), Positives = 111/234 (47%), Gaps = 37/234 (15%)
Query: 18 DHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVVNIHSKGK 77
+ E+++Y +I + GIWTRD++ + NL + K +KSL+ K IK V + + K
Sbjct: 91 NEEKIVYRIIEEAGNKGIWTRDIR--FKSNLMHTQLQKILKSLETKKFIKVVKPVAASKK 148
Query: 78 KHLMAVEFEPSKEISGGAWYSEGSLDTEFIKVVKSQCLKQIIK----------------- 120
K M EP + ++GGAWY + +TEF+ V+ QC + + +
Sbjct: 149 KVYMLYNLEPDESVTGGAWYQDQDFETEFVDVLNQQCYRFLEQKKERVKNCNAGPIAARN 208
Query: 121 LKVATLEGISDSIKRSGAFKVDLTKQQIEEIVRALVLDNQIMEVKSNGSGEFTNIPVGKV 180
+ A+ + + I G KV L+ +E I+ LV D + V+ +G+ +N+
Sbjct: 209 MTFASSKEVWKFISDLGISKVKLSITNMEMILNTLVYDGK---VERTLAGDGSNL----- 260
Query: 181 CYKNVSKGGGGGEPKTGS--LASIPCGVCPQINICKPDGVISPKTCVYYTKWLD 232
YK + +P S L PCG+CP C +G I+P C Y +WL+
Sbjct: 261 -YKAI-------QPLLNSPGLIRTPCGLCPVKRQCHDEGSITPIKCQYIKEWLE 306
>gi|121709264|ref|XP_001272362.1| DNA-directed RNA polymerase III subunit Rpc34, putative
[Aspergillus clavatus NRRL 1]
gi|119400511|gb|EAW10936.1| DNA-directed RNA polymerase III subunit Rpc34, putative
[Aspergillus clavatus NRRL 1]
Length = 355
Score = 99.0 bits (245), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 69/266 (25%), Positives = 120/266 (45%), Gaps = 52/266 (19%)
Query: 15 SLTDHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVVNIHS 74
+L+ E L+Y+VI S GIW R + R L +I+ + +KSL+ K+ IK V N+
Sbjct: 89 NLSPDESLVYNVIHSTGRNGIWVRQIVT--RTGLHKSILDRCLKSLEGKNYIKSVHNVKF 146
Query: 75 KGKKHLMAVEFEPSKEISGGAWYSEGSLDTEFIKVV----------------------KS 112
+K M PS++++GGAW+++G LD FI V ++
Sbjct: 147 PSRKMYMLAGLAPSEDVTGGAWFTDGVLDANFISTVAGFIEYTVSRKSWYEVPAADAQRN 206
Query: 113 QCLKQI-----IKLK---------------VATLEGISDSIKRSGAFKVDLTKQQIEEIV 152
+ LK + +K + T+ I+ ++ SG V L ++ I +++
Sbjct: 207 KRLKTVNGHAAVKSEPGEKRYLPFPAGYQGYPTVGMITAAVNESGITPVRLGEESIVQLL 266
Query: 153 RALVLDNQIMEVKSNGSGEFTNIPVGKVCYKNVSKGGGGGEPKTG------SLASIPCGV 206
L DN+++ + N + ++ + S+ G E + G + PCG
Sbjct: 267 EMLCYDNKLVAL--NNGELYKSVKNPATVKLDKSRKPEGDEAEVGDSLVKNGMTEAPCGQ 324
Query: 207 CPQINICKPDGVISPKTCVYYTKWLD 232
CP +C P G +SP++C Y+ WLD
Sbjct: 325 CPVFKLCAPGGAVSPESCEYFDPWLD 350
>gi|240279468|gb|EER42973.1| RNA polymerase III subunit Rpc34 [Ajellomyces capsulatus H143]
Length = 363
Score = 99.0 bits (245), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 66/272 (24%), Positives = 117/272 (43%), Gaps = 64/272 (23%)
Query: 15 SLTDHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVVNIHS 74
+L ERLIY V+ S G+WTR +K R NL IV + +KSL+ K+ IK V N+
Sbjct: 95 NLNAEERLIYSVVESTGRSGVWTRTIKS--RTNLHQTIVNRCLKSLETKNYIKSVRNVKY 152
Query: 75 KGKKHLMAVEFEPSKEISGGAWYSEGSLDTEFIK-------------------VVKSQCL 115
+K M +PS++++GGAW+++G LD++FI+ + +
Sbjct: 153 PQRKMYMLSGLQPSEDVTGGAWFTDGVLDSDFIRGLGGWIEHWVSSRSWYDRGAAERKAK 212
Query: 116 KQIIKLK------------------VATLEGISDSIKRSGAFKVDLTKQQIEEIVRALVL 157
+Q I+ T+ I+++I SG V + + I +++ L
Sbjct: 213 RQKIRPDNNTKGEPQYLPYLPSYNGYPTVSDITNAINSSGLTPVTMGESSIAQLLEMLCF 272
Query: 158 DNQIMEVKSNGSGEFTNIP------------------VGKVCYKNVSKGGGGGEPKTGSL 199
D +++ ++ + + P K N++ GG G +
Sbjct: 273 DGKLISLRDGAAYKSVKKPHQISLQRDLGLQTGDQTDQDKADQDNLTLGGNG-------M 325
Query: 200 ASIPCGVCPQINICKPDGVISPKTCVYYTKWL 231
PCG CP +C+ G ++ + C Y+ W+
Sbjct: 326 TEAPCGRCPVFALCEEGGPVNAENCEYFDAWI 357
>gi|424513015|emb|CCO66599.1| DNA-directed RNA polymerase III subunit RPC6 [Bathycoccus prasinos]
Length = 463
Score = 99.0 bits (245), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 49/146 (33%), Positives = 88/146 (60%), Gaps = 2/146 (1%)
Query: 16 LTDHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVVNIHSK 75
L+ +RL+ VI + + G+WT+++K+ + N P VTK K+L+ + LIK V ++ +
Sbjct: 118 LSSEDRLVLQVIETAGNSGMWTKEVKQ--KTNFPQVKVTKIFKTLEQRKLIKSVKHVAQQ 175
Query: 76 GKKHLMAVEFEPSKEISGGAWYSEGSLDTEFIKVVKSQCLKQIIKLKVATLEGISDSIKR 135
+K M + EPS+EI+GGAW+++ D +F+K+++ C I K K TL+ + + I +
Sbjct: 176 NRKVYMKYDLEPSREITGGAWFTDQEFDAKFVKIMRDVCRDFIRKEKRVTLQDVYEHIVK 235
Query: 136 SGAFKVDLTKQQIEEIVRALVLDNQI 161
S V+L K+ +++IV L D +
Sbjct: 236 SKISNVNLRKEDVKQIVDTLFYDGDV 261
Score = 44.3 bits (103), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 22/33 (66%)
Query: 199 LASIPCGVCPQINICKPDGVISPKTCVYYTKWL 231
L+ +PCG+C C+P G+ISP+ C Y +W+
Sbjct: 403 LSYVPCGICTVYQECEPGGLISPEKCPYMDRWI 435
>gi|384493398|gb|EIE83889.1| hypothetical protein RO3G_08594 [Rhizopus delemar RA 99-880]
Length = 304
Score = 99.0 bits (245), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 70/242 (28%), Positives = 106/242 (43%), Gaps = 41/242 (16%)
Query: 16 LTDHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVVNIHSK 75
L D RL+Y+ IRS + GIWT+D+K+ NL ++ +++K L+ K IK V ++
Sbjct: 80 LNDDARLVYNAIRSSGNTGIWTKDLKKA--TNLHTIVLNRTLKQLEQKREIKSVKHVKYP 137
Query: 76 GKKHLMAVEFEPSKEISGGAWYSEGSLDTEFIKVVKSQCLKQIIKLKVATLEGISDS--- 132
+K M PS E++GGA +K+ CLK I EGI D+
Sbjct: 138 TRKIYMLFNLTPSSEVTGGA-------------CLKAACLKYITSRSFPRAEGIPDAVFG 184
Query: 133 ---------------IKRSGAFKVDLTKQQIEEIVRALVLDNQI------MEVKSNGSGE 171
I S ++L+ + IE I+ LV D + M + S +
Sbjct: 185 AEHEHYPTASEVKRFITESRISSIELSVKDIESILNILVYDGDVEKKMPFMADMEDFSDD 244
Query: 172 FTNIPVGKVCYKNVSKGGGGGEPKTGSLASIPCGVCPQINICKPDGVISPKTCVYYTKWL 231
+ + + YK + K +T PCG CP + C DG ISP C YY WL
Sbjct: 245 EEDNGLVQWSYKAIKKAVNRLSAET--FTETPCGKCPVFSFCVEDGPISPMNCEYYKVWL 302
Query: 232 DF 233
++
Sbjct: 303 NW 304
>gi|389612872|dbj|BAM19835.1| DNA-directed RNA polymerase III, 34kD-subunit, partial [Papilio
xuthus]
Length = 286
Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 64/220 (29%), Positives = 113/220 (51%), Gaps = 31/220 (14%)
Query: 18 DHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVVNIHSKGK 77
+ E+++Y++I + GIW RD++ LR N+ + +TK +K+L++K +IK V +++ K
Sbjct: 82 NEEKVVYNLIEDAGNKGIWIRDIR--LRSNIANTQLTKVLKNLESKKVIKAVKCVNASKK 139
Query: 78 KHLMAVEFEPSKEISGGAWYSEGSLDTEFIKVVKSQCLKQIIKLKVATLEGISDSIKRS- 136
K M EP + ISGGAWY + ++EF+ ++ QCL+ L+ +D IK +
Sbjct: 140 KVYMLYNLEPDRSISGGAWYQDQDFESEFVDILNRQCLR--------FLQQRADKIKNNP 191
Query: 137 -----GAFKVDLTKQQIEEIVRALVLDNQIMEVKS----------NGSGEFTNIPVGKVC 181
G + + ++++ + L + N +EV+ +G E + +P G
Sbjct: 192 KGPVVGRTQSFASAVEVQKYITDLGISNVKLEVEDVITILNTLVYDGKAESSVLPDGTKV 251
Query: 182 YKNVSKGGGGGEPKTGSLASIPCGVCPQINICKPDGVISP 221
Y+ + P G L +PCGVCP I C G+I+P
Sbjct: 252 YRAIE----SLIPPPG-LVQVPCGVCPLILKCCSTGLITP 286
>gi|320035104|gb|EFW17046.1| DNA-directed RNA polymerase III subunit Rpc34 [Coccidioides
posadasii str. Silveira]
Length = 362
Score = 98.2 bits (243), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 67/264 (25%), Positives = 116/264 (43%), Gaps = 49/264 (18%)
Query: 15 SLTDHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVVNIHS 74
+L ERL+Y+VI S G+WT+ +K R NL I+ + +KSL+ K+ IK V N+
Sbjct: 95 NLNAEERLVYNVIHSTGRQGVWTKTIKA--RTNLHQTIMNRCLKSLEAKNYIKSVRNVKY 152
Query: 75 KGKKHLMAVEFEPSKEISGGAWYSEGSLDTEFIKVV-----------------KSQCLKQ 117
+K M +PS+E++GGAW+++G LD +FI + K+ K+
Sbjct: 153 PQRKIYMLAGLQPSEEVTGGAWFTDGVLDADFIHSLGVWIERWVSARSWYDTEKADRQKK 212
Query: 118 IIKLKVATLEG--------------------ISDSIKRSGAFKVDLTKQQIEEIVRALVL 157
KL+ TL+ I+ +I SG V L + I +++ L
Sbjct: 213 KRKLENDTLKSTESQYIPYLPSYGGYPTVIDITKAINASGLTPVTLGEGSIAQLLEMLCY 272
Query: 158 DNQIMEVKSNGSGEFTNIPVGKVCYKNVSKGGGGGEPKT----------GSLASIPCGVC 207
D +++ ++ + + P + + G T + +PCG C
Sbjct: 273 DGRLISLRDGAAYKSVKKPNQISLQRELGLQAPGAGKDTSDQDQLTLGSNGMTEVPCGRC 332
Query: 208 PQINICKPDGVISPKTCVYYTKWL 231
P ++C G ++ + C Y+ WL
Sbjct: 333 PVFSLCNEGGPVNAENCEYFQDWL 356
>gi|328873437|gb|EGG21804.1| RNA polymerase III subunit [Dictyostelium fasciculatum]
Length = 279
Score = 98.2 bits (243), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 65/208 (31%), Positives = 107/208 (51%), Gaps = 12/208 (5%)
Query: 16 LTDHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVVNIHSK 75
L+ E LIY +I +D G WT+DM+ + NL +TK IK+L+ + LIK V I +
Sbjct: 76 LSADEMLIYQIIEDSKDKGAWTKDMRGQ--TNLQQVQITKIIKTLETRKLIKAVKTIDAG 133
Query: 76 GKKHLMAVEFEPSKEISGGAWYSEG-SLDTEFIKVVKSQCLKQIIKLKVATLEGISDSIK 134
KK M+ EPS++++GG+ YS G +LD E I +K C I A + + + +K
Sbjct: 134 KKKVYMSYSMEPSRDLTGGSLYSGGQTLDQELINAMKWSCSSFISNKGAADISEVMNYLK 193
Query: 135 RSGAFKVDLTKQQIEEIVRALVLDNQIMEVKSNGSGE-FTNIPVGKVCYKNVSKGGGGGE 193
+ G + DLT++ I ++ +L+ D + E++ + + P G + YK +
Sbjct: 194 KQG--EKDLTEEDILTLLNSLIYDGLVEEMRDTRAKHVLSRKPTG-IIYKPTKT-----K 245
Query: 194 PKTGSLASIPCGVCPQINICKPDGVISP 221
+PCG CP ++C G I+P
Sbjct: 246 IPENHFTKMPCGNCPVFHLCSEVGEITP 273
>gi|384496643|gb|EIE87134.1| hypothetical protein RO3G_11845 [Rhizopus delemar RA 99-880]
Length = 296
Score = 97.8 bits (242), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 57/164 (34%), Positives = 85/164 (51%), Gaps = 20/164 (12%)
Query: 16 LTDHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVVNIHSK 75
L D RL+Y+ IR+ + GIWT+D+K+ NL ++ +++K L+ K IK V ++
Sbjct: 84 LNDDARLVYNTIRAAGNNGIWTKDLKK--TTNLHTIVLNRTLKQLEQKQEIKAVKHVKYP 141
Query: 76 GKKHLMAVEFEPSKEISGGAWYSEGSLDTEFIKVVKSQCLKQIIKLKVATLEGISDS--- 132
+K M PS E++GGAWY++ LDTEFI +K+ CLK I +EGI D+
Sbjct: 142 TRKIYMLFNLTPSSEVTGGAWYTDQELDTEFIDSLKAACLKYIASRSFPRIEGIPDAVFG 201
Query: 133 ---------------IKRSGAFKVDLTKQQIEEIVRALVLDNQI 161
I S +DL+ + IE I+ LV D I
Sbjct: 202 ADHEHYATASEVRRFITESRISSIDLSVKDIESILDILVYDGDI 245
>gi|355712768|gb|AES04459.1| polymerase III polypeptide F, 39 kDa [Mustela putorius furo]
Length = 298
Score = 97.8 bits (242), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 62/209 (29%), Positives = 109/209 (52%), Gaps = 25/209 (11%)
Query: 18 DHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVVNIHSKGK 77
+ E+L+Y +I + GIW+RD++ + NLP + K +K+L++K LIK V ++ + K
Sbjct: 97 NQEKLVYQIIEDAGNKGIWSRDIR--YKSNLPLTEINKILKNLESKKLIKAVKSVAASKK 154
Query: 78 KHLMAVEFEPSKEISGGAWYSEGSLDTEFIKVVKSQCLKQI-IKLKVATLEGISDSIKRS 136
K M +P + ++GGAWYS+ ++EF++V+ QC K + K + A + I+R+
Sbjct: 155 KVYMLYNLQPDRSVTGGAWYSDQDFESEFVEVLNQQCFKFLQTKAETARESKQNPMIQRN 214
Query: 137 GAF----------------KVDLTKQQIEEIVRALVLDNQI-MEVKSNGSGEFTNIPVGK 179
+F KV+L+ + IE I+ L+ D ++ M + + G ++
Sbjct: 215 SSFASSHEVWKYICELGISKVELSMEDIETILNTLIYDGKVEMTIIAAKEGTVGSVDGHM 274
Query: 180 VCYKNVSKGGGGGEPKTGSLASIPCGVCP 208
Y+ V+ P TG L PCG+CP
Sbjct: 275 KLYRAVNPII----PPTG-LVRAPCGLCP 298
>gi|291001191|ref|XP_002683162.1| predicted protein [Naegleria gruberi]
gi|284096791|gb|EFC50418.1| predicted protein [Naegleria gruberi]
Length = 245
Score = 97.4 bits (241), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 63/220 (28%), Positives = 112/220 (50%), Gaps = 14/220 (6%)
Query: 16 LTDHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVVNIHSK 75
LTD + IY +I + GIW + + ++ + N D + K +K+L++K LI+++ +I K
Sbjct: 38 LTDEQIGIYQMIELSGNKGIWKKSISKKAKKNEKD--LEKILKALESKQLIRKISDITQK 95
Query: 76 GKKHL--MAVEFEPSKEISGGAWYSEGSLDTEFIKVVKSQCLKQIIKLKVATLEGISDSI 133
+ +A EPSKEI+GG WY +G ++E + ++++ + + K T E +
Sbjct: 96 KGTQIVYIASHIEPSKEITGGIWYIDGKFNSELVDKLRTETITYLEKKPKRTHEVLEHIK 155
Query: 134 KRSGAFKVDLTKQQIEEIVRALVLDNQIMEVKSNGSGEFTNIPVGKVCYKNVSKGGGGGE 193
+ VDL +++++ LV D + ++ N + N + +V +VS
Sbjct: 156 SLAIIDHVDLGSDDMQQVIDTLVFDGFLEKIIDNNN--VGNQSLYRVALSSVST------ 207
Query: 194 PKTGSLASIPCGVCPQINICKPDGVISPKTCVYYTKWLDF 233
+ IPC CP + C +G I+PKTC Y KW+DF
Sbjct: 208 --ENAFVDIPCSTCPVFDQCTENGDITPKTCPYLKKWMDF 245
>gi|261196936|ref|XP_002624871.1| DNA-directed RNA polymerase III subunit Rpc34 [Ajellomyces
dermatitidis SLH14081]
gi|239596116|gb|EEQ78697.1| DNA-directed RNA polymerase III subunit Rpc34 [Ajellomyces
dermatitidis SLH14081]
Length = 363
Score = 97.4 bits (241), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 66/272 (24%), Positives = 116/272 (42%), Gaps = 64/272 (23%)
Query: 15 SLTDHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVVNIHS 74
+L ERLIY V+ S G+WTR +K R NL IV + +KSL+ K+ IK V N+
Sbjct: 95 NLNAEERLIYSVVESTGRSGVWTRTIKS--RTNLHQTIVNRCLKSLETKNYIKSVRNVKY 152
Query: 75 KGKKHLMAVEFEPSKEISGGAWYSEGSLDTEFIKVV------------------------ 110
+K M +PS+E++GGAW+++G LD +FI+ +
Sbjct: 153 PQRKMYMLSGLQPSEEVTGGAWFTDGVLDADFIRGLGGWIEHWVSARSWYDRAAAERKAA 212
Query: 111 ------------KSQCLKQIIKLK-VATLEGISDSIKRSGAFKVDLTKQQIEEIVRALVL 157
+ Q L + T+ I+++I SG V + + I +++ L
Sbjct: 213 KRQKIRPDNAKEEPQYLPYLPSYNGYPTVTDITNAINNSGLTPVTMGESSIAQLLEMLCF 272
Query: 158 DNQIMEVKSNGSGEFTNIP------------------VGKVCYKNVSKGGGGGEPKTGSL 199
D +++ ++ + + P K +++ GG G +
Sbjct: 273 DGRLISLRDGAAYKSVKKPNQISLQRDLGLQTSDQTDQDKTDQDSLTLGGNG-------M 325
Query: 200 ASIPCGVCPQINICKPDGVISPKTCVYYTKWL 231
PCG CP +C+ G ++ + C Y+ +W+
Sbjct: 326 TEAPCGRCPVFALCQEGGPVNAENCEYFDEWI 357
>gi|392867939|gb|EAS33659.2| DNA-directed RNA polymerase III subunit Rpc34 [Coccidioides immitis
RS]
Length = 362
Score = 97.1 bits (240), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 66/264 (25%), Positives = 115/264 (43%), Gaps = 49/264 (18%)
Query: 15 SLTDHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVVNIHS 74
+L ERL+Y+VI S G+WT+ +K R NL I+ + +KSL+ K+ IK V N+
Sbjct: 95 NLNAEERLVYNVIHSTGRQGVWTKTIKA--RTNLHQTIMNRCLKSLEAKNYIKSVRNVKY 152
Query: 75 KGKKHLMAVEFEPSKEISGGAWYSEGSLDTEFIKVV-----------------KSQCLKQ 117
+K M +PS+E++GGAW+++G LD +FI + K+ K+
Sbjct: 153 PQRKIYMLAGLQPSEEVTGGAWFTDGVLDADFIHSLGVWIERWVSARSWYDTEKADRQKK 212
Query: 118 IIKLK--------------------VATLEGISDSIKRSGAFKVDLTKQQIEEIVRALVL 157
KL+ T+ I+ +I SG V L + I +++ L
Sbjct: 213 KRKLENDIPKSTESQYIPYLPSYGGYPTVMDITKAINASGLTPVTLGEGSIAQLLEMLCY 272
Query: 158 DNQIMEVKSNGSGEFTNIPVGKVCYKNVSKGGGGGEPKT----------GSLASIPCGVC 207
D +++ ++ + + P + + G T + +PCG C
Sbjct: 273 DGRLISLRDGAAYKSVKKPNQISLQRELGLQAPGAGKDTSDQDQLTLGSNGMTEVPCGRC 332
Query: 208 PQINICKPDGVISPKTCVYYTKWL 231
P ++C G ++ + C Y+ WL
Sbjct: 333 PVFSLCNEGGPVNAENCEYFQDWL 356
>gi|303323527|ref|XP_003071755.1| RNA polymerase Rpc34 subunit family protein [Coccidioides posadasii
C735 delta SOWgp]
gi|240111457|gb|EER29610.1| RNA polymerase Rpc34 subunit family protein [Coccidioides posadasii
C735 delta SOWgp]
Length = 362
Score = 96.7 bits (239), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 66/264 (25%), Positives = 115/264 (43%), Gaps = 49/264 (18%)
Query: 15 SLTDHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVVNIHS 74
+L ERL+Y+VI S G+WT+ +K R NL I+ + +KSL+ K+ IK V N+
Sbjct: 95 NLNAEERLVYNVIHSTGRQGVWTKTIKA--RTNLHQTIMNRCLKSLEAKNYIKSVRNVKY 152
Query: 75 KGKKHLMAVEFEPSKEISGGAWYSEGSLDTEFIKVV-----------------KSQCLKQ 117
+K M +PS+E++GGAW+++G LD +FI + K+ K+
Sbjct: 153 PQRKIYMLAGLQPSEEVTGGAWFTDGVLDADFIHSLGVWIERWVSARSWYDTEKADRQKK 212
Query: 118 IIKLK--------------------VATLEGISDSIKRSGAFKVDLTKQQIEEIVRALVL 157
KL+ T+ I+ +I SG V L + I +++ L
Sbjct: 213 KRKLENDTPKSTESQYIPYLPSYGGYPTVIDITKAINASGLTPVTLGEGSIAQLLEMLCY 272
Query: 158 DNQIMEVKSNGSGEFTNIPVGKVCYKNVSKGGGGGEPKT----------GSLASIPCGVC 207
D +++ ++ + + P + + G T + +PCG C
Sbjct: 273 DGRLISLRDGAAYKSVKKPNQISLQRELGLQAPGAGKDTSDQDQLTLGSNGMTEVPCGRC 332
Query: 208 PQINICKPDGVISPKTCVYYTKWL 231
P ++C G ++ + C Y+ WL
Sbjct: 333 PVFSLCNEGGPVNAENCEYFQDWL 356
>gi|407919972|gb|EKG13191.1| RNA polymerase Rpc34 [Macrophomina phaseolina MS6]
Length = 267
Score = 96.7 bits (239), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 68/275 (24%), Positives = 120/275 (43%), Gaps = 71/275 (25%)
Query: 16 LTDHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVVNIHSK 75
+ +ERL+Y I S +D G+WTR +K + N ++ K++KSL+ K L+K + ++
Sbjct: 1 MDPNERLVYSHISSAEDQGMWTRTIK--AKTNFHQTVINKALKSLEGKRLVKSITSVKHP 58
Query: 76 GKKHLMAVEFEPSKEISGGAWYSEGSLDTEFIKVVKSQCLKQIIK----------LKVAT 125
G+K M PS+E+SGG W+++G LD E I+ + + L + + + A
Sbjct: 59 GRKIYMLAHLTPSEEVSGGPWHTDGELDIELIEQISTVILNFVEQNSWVEQKPQHVSKAD 118
Query: 126 LEGISDSIKRSGA--------------------------FKVDLTKQQIEE--------- 150
+ + ++RSGA ++ T I E
Sbjct: 119 IRRKKEQVQRSGANNTPEPPKYRPALGRNGGPLLPHAPGYRNYPTATSILEFIEKSGVIE 178
Query: 151 --IVRALVLDNQIMEVKSNGSGEFTNIPVGKVCYKN------------VSKGGGGGEPKT 196
++R + L + + + +G E +G + Y++ V++G G G
Sbjct: 179 GVVIREMDLRSLLENMVFDGKLER----IGAMGYRSVRGAMDAATDAEVAEGYGNG---- 230
Query: 197 GSLASIPCGVCPQINICKPDGVISPKTCVYYTKWL 231
L PCG CP N+C+ G +S C Y+ +WL
Sbjct: 231 --LTQAPCGRCPVFNLCEEGGPVSASNCAYFDEWL 263
>gi|332027979|gb|EGI68030.1| DNA-directed RNA polymerase III subunit RPC6 [Acromyrmex
echinatior]
Length = 306
Score = 96.3 bits (238), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 63/234 (26%), Positives = 106/234 (45%), Gaps = 37/234 (15%)
Query: 18 DHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVVNIHSKGK 77
+ E+++Y +I + GIW RD+K + NL + + K +KSL+ +K V + + K
Sbjct: 91 NEEKIVYKIIEEAGNQGIWIRDIKT--KSNLMNKPLEKILKSLETSKYVKVVKPVEASKK 148
Query: 78 KHLMAVEFEPSKEISGGAWYSEGSLDTEFIKVVKSQCLKQIIK----------------- 120
K M EP++ ++GGAWY + +TEF+ V+ QC + + +
Sbjct: 149 KVYMLYNLEPAESVTGGAWYQDQDFETEFVDVLNQQCYRFLEQKREKTKNCNTGPIAARN 208
Query: 121 LKVATLEGISDSIKRSGAFKVDLTKQQIEEIVRALVLDNQIMEVKSNGSGEFTNIPVGKV 180
+ A+ + + I G KV LT IE I+ L+ D +I + +N G
Sbjct: 209 MTYASSKDVLKYISDLGVSKVKLTVTDIEVILNTLICDGKIEQTLTND---------GNH 259
Query: 181 CYKNVSKGGGGGEPKTG--SLASIPCGVCPQINICKPDGVISPKTCVYYTKWLD 232
Y+ + +P L PCG+CP C +G ++P C Y WL+
Sbjct: 260 LYRAI-------QPLLNPMGLVKTPCGLCPVRKQCHNEGPVTPIKCHYIKDWLE 306
>gi|239609703|gb|EEQ86690.1| DNA-directed RNA polymerase III subunit Rpc34 [Ajellomyces
dermatitidis ER-3]
gi|327355362|gb|EGE84219.1| DNA-directed RNA polymerase III subunit Rpc34 [Ajellomyces
dermatitidis ATCC 18188]
Length = 363
Score = 95.9 bits (237), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 65/272 (23%), Positives = 116/272 (42%), Gaps = 64/272 (23%)
Query: 15 SLTDHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVVNIHS 74
+L ERLIY V+ S G+WTR +K R NL IV + +KSL+ K+ IK V N+
Sbjct: 95 NLNAEERLIYSVVESTGRSGVWTRTIKS--RTNLHQTIVNRCLKSLETKNYIKSVRNVKY 152
Query: 75 KGKKHLMAVEFEPSKEISGGAWYSEGSLDTEFIKVV------------------------ 110
+K M +PS++++GGAW+++G LD +FI+ +
Sbjct: 153 PQRKMYMLSGLQPSEDVTGGAWFTDGVLDADFIRGLGGWIEHWVSARSWYDRAAAERKAA 212
Query: 111 ------------KSQCLKQIIKLK-VATLEGISDSIKRSGAFKVDLTKQQIEEIVRALVL 157
+ Q L + T+ I+++I SG V + + I +++ L
Sbjct: 213 KRQKIRPDNAKEEPQYLPYLPSYNGYPTVTDITNAINNSGLTPVTMGESSIAQLLEMLCF 272
Query: 158 DNQIMEVKSNGSGEFTNIP------------------VGKVCYKNVSKGGGGGEPKTGSL 199
D +++ ++ + + P K +++ GG G +
Sbjct: 273 DGRLISLRDGAAYKSVKKPNQISLQRDLGLQTSDQTDQDKTDQDSLTLGGNG-------M 325
Query: 200 ASIPCGVCPQINICKPDGVISPKTCVYYTKWL 231
PCG CP +C+ G ++ + C Y+ +W+
Sbjct: 326 TEAPCGRCPVFALCQEGGPVNAENCEYFDEWI 357
>gi|344239296|gb|EGV95399.1| Protein transport protein Sec23B [Cricetulus griseus]
Length = 630
Score = 95.1 bits (235), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 57/194 (29%), Positives = 100/194 (51%), Gaps = 27/194 (13%)
Query: 18 DHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVVNIHSKGK 77
+ E+L+Y +I + GIW+RD++ + NLP + K +K+L++K LIK V ++ + K
Sbjct: 28 NQEKLVYQIIEDAGNKGIWSRDIR--YKSNLPLTEINKILKNLESKKLIKAVKSVAASKK 85
Query: 78 KHLMAVEFEPSKEISGGAWYSEGSLDTEFIKVVKSQCLKQIIKLKVATLEGISDSIKRSG 137
K M +P + ++GGAWYS+ ++EF++V+ QC K +
Sbjct: 86 KVYMLYNLQPDRSVTGGAWYSDQDFESEFVEVLNQQCFKFL------------------- 126
Query: 138 AFKVDLTKQQIEEIVRALVLDNQI-MEVKSNGSGEFTNIPVGKVCYKNVSKGGGGGEPKT 196
KV+L+ + IE I+ L+ D ++ M + + G ++ Y+ V+ P T
Sbjct: 127 QTKVELSMEDIETILNTLIYDGKVEMTIIAAKEGTVGSVDGHMKLYRAVNP----ILPPT 182
Query: 197 GSLASIPCGVCPQI 210
G L PCG+CP +
Sbjct: 183 G-LVRAPCGLCPDM 195
>gi|380025937|ref|XP_003696719.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase III
subunit RPC6-like [Apis florea]
Length = 311
Score = 94.7 bits (234), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 70/251 (27%), Positives = 111/251 (44%), Gaps = 37/251 (14%)
Query: 1 MSKRKRPDSNAPSDSLTDHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSL 60
+ + K P + + E+++Y +I + GIW RD++ + NL + K +KSL
Sbjct: 79 LYRLKDPSKAKIAKGADNEEKIVYTIIEEAGNKGIWIRDIR--FKSNLMPTQLNKILKSL 136
Query: 61 QNKSLIKEVVNIHSKGKKHLMAVEFEPSKEISGGAWYSEGSLDTEFIKVVKSQCLKQIIK 120
+ K IK V ++ + KK M EP ++GGAWY + + EF+ V+ QC + + K
Sbjct: 137 ETKKFIKAVKSVAASKKKVYMLYNLEPDTSVTGGAWYQDQDFEAEFVDVLNQQCYRFLEK 196
Query: 121 LK-----------------VATLEGISDSIKRSGAFKVDLTKQQIEEIVRALVLDNQIME 163
K A+ + + I G KV L+ + +E I+ LV D +
Sbjct: 197 KKSKXNSCGGGPIMARNVTFASSKEVWKFISDLGISKVKLSVEDLEMILNTLVYDGK--- 253
Query: 164 VKSNGSGEFTNIPVGKVCYKNVSKGGGGGEP--KTGSLASIPCGVCPQINICKPDGVISP 221
V+ SG+ G Y+ V EP L CGVCP C G ++P
Sbjct: 254 VERTLSGD------GNTLYRAV-------EPLLNPPGLIKSTCGVCPVRKNCCDVGDVTP 300
Query: 222 KTCVYYTKWLD 232
C Y T+WL+
Sbjct: 301 TKCQYITEWLE 311
>gi|66509068|ref|XP_624984.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC6-like [Apis
mellifera]
Length = 311
Score = 94.7 bits (234), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 70/251 (27%), Positives = 111/251 (44%), Gaps = 37/251 (14%)
Query: 1 MSKRKRPDSNAPSDSLTDHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSL 60
+ + K P + + E+++Y +I + GIW RD++ + NL + K +KSL
Sbjct: 79 LYRLKDPSKAKIAKGADNEEKIVYTIIEEAGNKGIWIRDIR--FKSNLMPTQLNKILKSL 136
Query: 61 QNKSLIKEVVNIHSKGKKHLMAVEFEPSKEISGGAWYSEGSLDTEFIKVVKSQCLKQIIK 120
+ K IK V ++ + KK M EP ++GGAWY + + EF+ V+ QC + + K
Sbjct: 137 ETKKFIKAVKSVAASKKKVYMLYNLEPDTSVTGGAWYQDQDFEAEFVDVLNQQCYRFLEK 196
Query: 121 LK-----------------VATLEGISDSIKRSGAFKVDLTKQQIEEIVRALVLDNQIME 163
K A+ + + I G KV L+ + +E I+ LV D +
Sbjct: 197 KKEQMNSCGGGPIMARNVTFASSKEVWKFISDLGISKVKLSVEDLEMILNTLVYDGK--- 253
Query: 164 VKSNGSGEFTNIPVGKVCYKNVSKGGGGGEPKTG--SLASIPCGVCPQINICKPDGVISP 221
V+ SG+ G Y+ V EP L CGVCP C G ++P
Sbjct: 254 VERTLSGD------GNTLYRAV-------EPLLNPPGLIKSTCGVCPVRKNCCDVGDVTP 300
Query: 222 KTCVYYTKWLD 232
C Y T+WL+
Sbjct: 301 TKCQYITEWLE 311
>gi|383863773|ref|XP_003707354.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC6-like
[Megachile rotundata]
Length = 310
Score = 94.0 bits (232), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 69/251 (27%), Positives = 112/251 (44%), Gaps = 37/251 (14%)
Query: 1 MSKRKRPDSNAPSDSLTDHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSL 60
+ + K P + + E+++Y +I + GIW RD++ + NL + K +KSL
Sbjct: 78 LYRLKDPSKAKVAKGADNEEKIVYTIIEEAGNKGIWIRDIR--FKSNLMPTQLNKILKSL 135
Query: 61 QNKSLIKEVVNIHSKGKKHLMAVEFEPSKEISGGAWYSEGSLDTEFIKVVKSQCLKQIIK 120
+ K IK V ++ + KK M EP ++GGAWY + + EF+ V+ QC + + K
Sbjct: 136 ETKKFIKAVKSVAASKKKVYMLYNLEPDTSVTGGAWYQDQDFEAEFVDVLNQQCYRFLEK 195
Query: 121 -----------------LKVATLEGISDSIKRSGAFKVDLTKQQIEEIVRALVLDNQIME 163
+ A+ + + I G KV L+ +E I+ LV D +
Sbjct: 196 KREQINSSKGGPIIARNVTFASSKEVWKFISDLGISKVKLSVDDLEMILNTLVYDGK--- 252
Query: 164 VKSNGSGEFTNIPVGKVCYKNVSKGGGGGEPKTG--SLASIPCGVCPQINICKPDGVISP 221
V+ SG+ +N+ Y+ V EP L CGVCP C G ++P
Sbjct: 253 VERTLSGDGSNL------YRAV-------EPLLNPPGLIKSTCGVCPVRKNCCDVGDVTP 299
Query: 222 KTCVYYTKWLD 232
C Y T+WL+
Sbjct: 300 TKCQYITEWLE 310
>gi|56756084|gb|AAW26220.1| SJCHGC02354 protein [Schistosoma japonicum]
Length = 305
Score = 92.8 bits (229), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 75/242 (30%), Positives = 127/242 (52%), Gaps = 37/242 (15%)
Query: 15 SLTD-HERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEV-VNI 72
SL+D ERL+Y+ IR+ + + + E + LP N + + +KSL +K +IKEV + I
Sbjct: 78 SLSDLEERLVYNAIRNAGEEAASLKLISSETK--LPQNRIPRILKSLISKKMIKEVPMAI 135
Query: 73 HSKGKKHLMAVEFEPSKEISGGAWYS-EGSLDTEFIKVVKSQCLKQIIKLKVATLEGISD 131
K K +L+ +E EPS++++ ++ E +D EFI ++++ CLK ++ K + I+D
Sbjct: 136 GHKQKVYLL-MELEPSEKLAANTLFAGESGVDAEFISILRAACLK-YLQDKANSASHIAD 193
Query: 132 SIKRSGAFKVDLTKQQIEEIVRAL-----------VLDNQ-IMEVKSNGSGEFTNIPVGK 179
++R A V EEI R + V D Q +++V G GE +
Sbjct: 194 PLERRQASYVS-----CEEIHRFITNTKICTVAMTVQDVQCVLDVLKFG-GELET----R 243
Query: 180 VCYKNVSKGGGGG--------EPKTGSLASIPCGVCPQINICKPDGVISPKTCVYYTKWL 231
+C + + +G G P +LASIPC VC C+PDG I+P++C + ++L
Sbjct: 244 ICSETLDQGTSFGMLYRLATQTPCVANLASIPCTVCLCRKDCRPDGPINPQSCKLFQEFL 303
Query: 232 DF 233
+F
Sbjct: 304 EF 305
>gi|340518110|gb|EGR48352.1| predicted protein [Trichoderma reesei QM6a]
Length = 352
Score = 92.4 bits (228), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 65/253 (25%), Positives = 108/253 (42%), Gaps = 43/253 (16%)
Query: 17 TDHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVVNIHSKG 76
TD + ++Y +I GIWT+ +++ R+N+ D+++ +IK LQ K LI N+
Sbjct: 99 TDEQVMVYSLIDDSGGDGIWTQTLQK--RLNMHDSVLKNAIKQLQAKGLIAPFKNVEHPN 156
Query: 77 KKHLMAVEFEPSKEISGGAWYSEGSLDTEFIK--------VVKSQCLKQ----------- 117
KK + PS +GG WY++ LD FI+ +K Q
Sbjct: 157 KKMYIKASIRPSDRATGGPWYTDQDLDEAFIEDLQRVVFDFIKRQSTYHSTHGGASRAAS 216
Query: 118 ----IIKLKVA-----TLEGISDSIKRSG-AFKVDLTKQQIEEIVRALVLDNQIMEVKSN 167
++ L T+ I+ + SG L++ ++++V LV DN + VK
Sbjct: 217 SKPALLPLPAGYTAYPTVRDIARLLSSSGITNNTILSEGDVKKLVDVLVWDNLVEPVKVA 276
Query: 168 GSGEFTNIPVGKVCYKNVSKGGGGGEPK---------TGSLASIPCGVCPQINICKPDGV 218
G + V ++ ++V G +P L PCG CP +C+ G
Sbjct: 277 GRVGYR---VSRIARQSVESWAGRDDPTGRAGGPELYVSPLTEAPCGRCPVFELCEEGGP 333
Query: 219 ISPKTCVYYTKWL 231
+ P C Y+ KWL
Sbjct: 334 VGPSNCEYFQKWL 346
>gi|19075898|ref|NP_588398.1| DNA-directed RNA polymerase III complex subunit Rpc34 (predicted)
[Schizosaccharomyces pombe 972h-]
gi|9297041|sp|O94553.1|RPC6_SCHPO RecName: Full=Probable DNA-directed RNA polymerase III subunit
rpc6; Short=RNA polymerase III subunit C6; AltName:
Full=DNA-directed RNA polymerase III 34 kDa polypeptide;
AltName: Full=RNA polymerase III subunit C34
gi|4176538|emb|CAA22872.1| DNA-directed RNA polymerase III complex subunit Rpc34 (predicted)
[Schizosaccharomyces pombe]
gi|76782161|gb|ABA54851.1| RNA polymerase III subunit Rpc34 [Schizosaccharomyces pombe]
Length = 301
Score = 92.0 bits (227), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 62/247 (25%), Positives = 116/247 (46%), Gaps = 38/247 (15%)
Query: 6 RPDSNAPSDSLTDHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSL 65
R D ++ E+++Y I++ + GIW + + LR NL ++V + +KSL++K+L
Sbjct: 73 RLDEAKTVSTMEGDEQIVYSFIKNSGNEGIWRKTLT--LRTNLHVSVVDRCLKSLESKNL 130
Query: 66 IKEVVNIHSKGKKHLMAVEFEPSKEISGGAWYSEGSLDTEFIKVVKSQCLKQIIKLKVA- 124
+K + ++ + +K M + PS E++GG W+++ LD EFI+ +K + +
Sbjct: 131 VKSIKSVKNPTRKIYMLYDLVPSTELTGGPWFTDQELDVEFIENLKKVIYRYVHSKSFPP 190
Query: 125 -------------------TLEGISDSIKRSGAFKVDLTKQQIEEIVRALVLDNQIMEVK 165
T I + ++ + KVDL+ + +V L+ D ++ E +
Sbjct: 191 KKAAMGPDLVWGPEYNGYPTALQIHNWLRSTNITKVDLSLANVISLVDVLIYDGKV-EKR 249
Query: 166 SNGSGEFTNIPVGKVCYKNVSKGGGGGEPKTGSLASIPCGVCPQINICKPDGVISPKTCV 225
S+G+ Y+ + + T S PCG CP +IC + ++P TC
Sbjct: 250 SDGAS-----------YRAIRVNNENIDAFTES----PCGNCPVSDICDANSRVNPITCE 294
Query: 226 YYTKWLD 232
Y KWL+
Sbjct: 295 YLDKWLN 301
>gi|123487163|ref|XP_001324886.1| RNA polymerase Rpc34 subunit family protein [Trichomonas vaginalis
G3]
gi|121907776|gb|EAY12663.1| RNA polymerase Rpc34 subunit family protein [Trichomonas vaginalis
G3]
Length = 285
Score = 91.7 bits (226), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 56/212 (26%), Positives = 105/212 (49%), Gaps = 21/212 (9%)
Query: 18 DHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVVNIHSKGK 77
DH R IYD+I + GIW RD+++ D ++ +K L+ + LIK + +IH K
Sbjct: 90 DHHR-IYDLIDKAGNKGIWRRDIRKA--GGCADKTLSNVLKELETRCLIKSITSIHEKKL 146
Query: 78 KHLMAVEFEPSKEISGGAWYSEGSLDTEFIKVVKSQCLKQIIKLKVATLEGISDSIKRSG 137
K + + PS+EI+GG WY +G+ +T F++ + + + + T++ + + IK +
Sbjct: 147 KLYLLYDMPPSEEITGGVWYLDGTFNTTFVEQLIANSVNIVQVSGGITVKDMIEKIKLNT 206
Query: 138 AFKVDLTKQQIEEIVRALVLDNQIMEVKSNGSGEFTNIPVGKVCYKNVSKGGGGGEPKTG 197
+T ++ E+++ A+V ++ +K++G+ I C
Sbjct: 207 LAAAHITDKEAEQVITAMVHSKRV--IKTSGAMLRPGILEVPPC---------------- 248
Query: 198 SLASIPCGVCPQINICKPDGVISPKTCVYYTK 229
++ +PC CP C P G I+P++C Y K
Sbjct: 249 PISEVPCCGCPVFTQCYPGGPINPRSCPYLQK 280
>gi|50555584|ref|XP_505200.1| YALI0F09295p [Yarrowia lipolytica]
gi|49651070|emb|CAG78007.1| YALI0F09295p [Yarrowia lipolytica CLIB122]
Length = 282
Score = 91.7 bits (226), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 66/229 (28%), Positives = 105/229 (45%), Gaps = 31/229 (13%)
Query: 16 LTDHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVVNIHSK 75
LT E ++Y+ I + GIW R + R NL N+V + +KSL+ + +IK V ++ K
Sbjct: 73 LTSDEYIVYNYIAESERDGIWVRTITA--RSNLHINVVHRCLKSLEQQHIIKMVKSVQQK 130
Query: 76 GKKHLMAVEFEPSKEISGGAWYSEGSLDTEFI----KVVKSQCLKQIIKLKVAT------ 125
+K M +PS E++GG W+S+ LD+EF+ VV C ++ L +
Sbjct: 131 TRKMYMLYNLQPSAELTGGPWFSDAELDSEFVDLLLDVVYHYC-EENTNLALGANAPPVH 189
Query: 126 LEGISDSIKRSGAFKVDLTKQQIEEIVRALVLDNQIMEVKSNGSGEFTNIPVGKVCYKNV 185
+ I I +V+L + I + LV D+++ K+ YK
Sbjct: 190 VTDIKQFIVDQEVSRVELDEGHIRILCEVLVYDDRLERCKAG--------------YKAT 235
Query: 186 SKGGGGGE--PKTGSLASIPCGVCPQINICKPDGVISPKTCVYYTKWLD 232
G E PK S+ CG CP N+C G + + C Y+ +WLD
Sbjct: 236 LNGDLPDEELPKDAYTESV-CGQCPVFNVCSAGGPVDVE-CSYFDEWLD 282
>gi|224073136|ref|XP_002303989.1| predicted protein [Populus trichocarpa]
gi|222841421|gb|EEE78968.1| predicted protein [Populus trichocarpa]
Length = 89
Score = 91.3 bits (225), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 50/87 (57%), Positives = 58/87 (66%)
Query: 114 CLKQIIKLKVATLEGISDSIKRSGAFKVDLTKQQIEEIVRALVLDNQIMEVKSNGSGEFT 173
C QI KLKVAT E ++ I VD+TKQ IEEIVR LVLD IMEVKSNG EF
Sbjct: 3 CTNQIKKLKVATEEEVAGLINSCQDSDVDVTKQHIEEIVRTLVLDYAIMEVKSNGMAEFA 62
Query: 174 NIPVGKVCYKNVSKGGGGGEPKTGSLA 200
+IP+GKVC K +SK G G+PK + A
Sbjct: 63 SIPIGKVCCKCISKEGLEGKPKAETEA 89
>gi|350410921|ref|XP_003489178.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC6-like
[Bombus impatiens]
Length = 311
Score = 90.9 bits (224), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 67/251 (26%), Positives = 110/251 (43%), Gaps = 37/251 (14%)
Query: 1 MSKRKRPDSNAPSDSLTDHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSL 60
+ + K P + + E+++Y +I + GIW RD++ + NL + K +KSL
Sbjct: 79 LYRLKDPSKAKIAKGADNEEKIVYTIIEEAGNKGIWIRDIR--FKSNLMPTQLNKILKSL 136
Query: 61 QNKSLIKEVVNIHSKGKKHLMAVEFEPSKEISGGAWYSEGSLDTEFIKVVKSQCLKQI-- 118
+ K IK V ++ + KK M EP ++GGAWY + + EF+ V+ QC + +
Sbjct: 137 EIKKFIKAVKSVAASKKKVYMLYNLEPDTSVTGGAWYQDQDFEAEFVDVLNQQCYRFLEN 196
Query: 119 ---------------IKLKVATLEGISDSIKRSGAFKVDLTKQQIEEIVRALVLDNQIME 163
+ A+ + + I G KV L+ + +E I+ LV D +
Sbjct: 197 KREQMNSCRGGPIMARNVTFASSKEVWKFISDLGISKVKLSVEDLEMILNTLVYDGK--- 253
Query: 164 VKSNGSGEFTNIPVGKVCYKNVSKGGGGGEPKTG--SLASIPCGVCPQINICKPDGVISP 221
V+ SG+ G Y+ V EP L CG+CP C G ++P
Sbjct: 254 VERTLSGD------GSTLYRAV-------EPLLSPPGLIKSTCGICPVRKNCCDVGDVTP 300
Query: 222 KTCVYYTKWLD 232
C Y T+WL+
Sbjct: 301 TKCQYITEWLE 311
>gi|340714612|ref|XP_003395820.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC6-like
[Bombus terrestris]
Length = 311
Score = 90.9 bits (224), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 67/251 (26%), Positives = 110/251 (43%), Gaps = 37/251 (14%)
Query: 1 MSKRKRPDSNAPSDSLTDHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSL 60
+ + K P + + E+++Y +I + GIW RD++ + NL + K +KSL
Sbjct: 79 LYRLKDPSKAKIAKGADNEEKIVYTIIEEAGNKGIWIRDIR--FKSNLMPTQLNKILKSL 136
Query: 61 QNKSLIKEVVNIHSKGKKHLMAVEFEPSKEISGGAWYSEGSLDTEFIKVVKSQCLKQI-- 118
+ K IK V ++ + KK M EP ++GGAWY + + EF+ V+ QC + +
Sbjct: 137 EIKKFIKAVKSVAASKKKVYMLYNLEPDTSVTGGAWYQDQDFEAEFVDVLNQQCYRFLEN 196
Query: 119 ---------------IKLKVATLEGISDSIKRSGAFKVDLTKQQIEEIVRALVLDNQIME 163
+ A+ + + I G KV L+ + +E I+ LV D +
Sbjct: 197 KREQMNSCRGGPIMARNVTFASSKEVWKFISDLGISKVKLSVEDLEMILNTLVYDGK--- 253
Query: 164 VKSNGSGEFTNIPVGKVCYKNVSKGGGGGEPKTG--SLASIPCGVCPQINICKPDGVISP 221
V+ SG+ G Y+ V EP L CG+CP C G ++P
Sbjct: 254 VERTLSGD------GNTLYRAV-------EPLLSPPGLIKSTCGICPVRKNCCDVGDVTP 300
Query: 222 KTCVYYTKWLD 232
C Y T+WL+
Sbjct: 301 TKCQYITEWLE 311
>gi|391335259|ref|XP_003742013.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC6-like
[Metaseiulus occidentalis]
Length = 355
Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 68/232 (29%), Positives = 111/232 (47%), Gaps = 31/232 (13%)
Query: 20 ERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVVNIHSKGKKH 79
ER+++ VI + GIW RD++ + L ++K +KSL+ K LIK V ++ + KK
Sbjct: 108 ERVVFQVIERAGNKGIWIRDIR--IFSGLVLAQLSKVLKSLEVKKLIKSVKSVSAAKKKV 165
Query: 80 LMAVEFEPSKEISGGAWYSEGSLDTEFIKVVKSQCLKQII-KLK---------------- 122
M E EP + I+GGAWYS ++EF+ +++ QCL+ ++ K K
Sbjct: 166 YMLYELEPDRSITGGAWYSGQDFESEFVDILQQQCLRFLVHKAKTASEKFQDDFINMRNN 225
Query: 123 -VATLEGISDSIKRSGAFKVDLTKQQIEEIVRALVLDNQIME-VKSNGSGEFTNIPVGKV 180
VA+ E + + IK+ G KV L IE I+ L +++ + S G+ +
Sbjct: 226 AVASTEDVWNFIKQLGISKVQLDVGDIEVILNTLHYQGKVVRSISSEKIGDSND------ 279
Query: 181 CYKNVSKGGGGGEPKTG-SLASIPCGVCPQINICKPDGVISPKTCVYYTKWL 231
++S T ++ +IPCG C + C GV P +C Y L
Sbjct: 280 ---HLSLWASLDHSTTSMAICNIPCGKCMVRHDCSVSGVRRPSSCAYVKDLL 328
>gi|256086074|ref|XP_002579231.1| rna polymerase III (DNA directed) 39kD subunit-related [Schistosoma
mansoni]
gi|353228962|emb|CCD75133.1| rna polymerase III (DNA directed), 39kD subunit-related
[Schistosoma mansoni]
Length = 305
Score = 89.0 bits (219), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 71/244 (29%), Positives = 122/244 (50%), Gaps = 27/244 (11%)
Query: 8 DSNAPSDSLTD-HERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLI 66
DS SL+D ERL+Y+ IR+ + + + E + LP N + + +KSL +K +I
Sbjct: 71 DSTEKLKSLSDLEERLVYNAIRNAGEDAASLKLISSETK--LPQNRIPRILKSLISKKMI 128
Query: 67 KEVVNIHSKGKKHLMAVEFEPSKEISGGAWYS-EGSLDTEFIKVVKSQCLKQIIKLKVAT 125
KEV +K + +E EPS++++ ++ + +D EFI ++++ CLK ++ K +
Sbjct: 129 KEVPMAVGHKQKVYLLMELEPSEKLAANTLFAGDSGVDAEFISILRTACLK-YLQDKAIS 187
Query: 126 LEGISDSIKRSGAFKVDLTKQQIEEIVRAL-----------VLDNQ-IMEVKSNGSGEFT 173
I+D ++R A V EEI R + V D Q ++EV G GE
Sbjct: 188 ASHIADPLERRQASYVS-----CEEIHRFITNTKICTVSMTVQDVQCVLEVLKFG-GELE 241
Query: 174 NIPVGKVCYKNVSKG----GGGGEPKTGSLASIPCGVCPQINICKPDGVISPKTCVYYTK 229
+ ++ S G P +LA+IPC +C C+PDG I+P++C + +
Sbjct: 242 TRITSETSEQSTSFGILYRLATQTPSVANLANIPCTICLCRKDCRPDGPINPQSCKLFQE 301
Query: 230 WLDF 233
+L+F
Sbjct: 302 FLEF 305
>gi|343428974|emb|CBQ72519.1| related to RPC34-DNA-directed RNA polymerase III, 34 KD subunit
[Sporisorium reilianum SRZ2]
Length = 369
Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 63/250 (25%), Positives = 104/250 (41%), Gaps = 52/250 (20%)
Query: 16 LTDHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVVNIHSK 75
L ++E L+Y I+ ++ GIWT+ +K R L I+ + +KSL+ K L+K V ++
Sbjct: 92 LDENETLVYSHIKDARNEGIWTKQLKA--RTGLHQTIINRCLKSLEQKQLVKAVKSVKYP 149
Query: 76 GKKHLMAVEFEPSKEISGGAWYSEGSLDTEFIKVVKSQCLKQIIKLK------------- 122
+K M PS E+SGG WY++ LDT FI + S + ++ K
Sbjct: 150 TRKIYMLFGLTPSIELSGGPWYTDNELDTGFINEL-SMAILNFVRSKSFPKNGQSRALFP 208
Query: 123 ------VATLEGISDSIKRSGAFKVDLTKQQIEEIVRALVLDNQIMEVKSNGSGEFTNIP 176
+ + I ++ SG + +L + + ++ LV D QI IP
Sbjct: 209 TSHTSQLPSANSIHSYLQSSGLTETELEVEHVVSLLDILVYDEQI-----------EKIP 257
Query: 177 VGKVCYKNV-------------------SKGGGGGEPKTGSLASIPCGVCPQINICKPDG 217
V + + S G G + + PCG CP + C G
Sbjct: 258 VLPFSFGGMGGGMNGFDEDDQDYSDSGRSTDGSGSDSDSVGWTETPCGHCPVFDFCDDTG 317
Query: 218 VISPKTCVYY 227
++ +TC YY
Sbjct: 318 PVNAETCQYY 327
>gi|209882502|ref|XP_002142687.1| DNA-directed RNA polymerase III subunit RPC6 [Cryptosporidium muris
RN66]
gi|209558293|gb|EEA08338.1| DNA-directed RNA polymerase III subunit RPC6, putative
[Cryptosporidium muris RN66]
Length = 312
Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 62/231 (26%), Positives = 113/231 (48%), Gaps = 26/231 (11%)
Query: 14 DSLTDHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNK-SLIKEVVNI 72
+ LT E +Y I + + GIWT D+++ L +IV +++K L N+ +LIK + +I
Sbjct: 85 NKLTPDEYQVYCCIENAGNQGIWTADIRK--VTGLQTHIVQRAVKLLCNELNLIKPIKSI 142
Query: 73 HSKGKKHLMAVEFEPSKEISGGAWYSEGSLDTEFIKVVKSQCLKQIIKLKVATLEGISDS 132
H K +K + EPSKEI+GG +Y G D F+ ++ + + ++ + AT+ I D
Sbjct: 143 HVKNRKVYILASLEPSKEIAGGTFYDNGEFDMTFVDYIQDKIIAILMSKRRATINEILDF 202
Query: 133 IKRSGAFKVDLTKQQI-----EEIVRALVLDNQIMEVKSNGSGEFTNIPVGKVCYKNVSK 187
I + +++ I E ++ L+++++I+ K N +GE+ + + + +
Sbjct: 203 INSESSVDTCSSRRSISLSDLESVLNMLIIESKILCFKINNTGEWLYMCIY---WPSCLS 259
Query: 188 GGGGGEPKTGSLASIPCGVCPQINICKPDGVIS------PKTCVYYTKWLD 232
G E +PC CP N C G+ + P+ C+Y LD
Sbjct: 260 TNIGVE-------DVPCLSCPVFNTC--SGLFNTPILPCPQECIYLNFLLD 301
>gi|398408736|ref|XP_003855833.1| hypothetical protein MYCGRDRAFT_64857 [Zymoseptoria tritici IPO323]
gi|339475718|gb|EGP90809.1| hypothetical protein MYCGRDRAFT_64857 [Zymoseptoria tritici IPO323]
Length = 349
Score = 88.2 bits (217), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 59/255 (23%), Positives = 109/255 (42%), Gaps = 40/255 (15%)
Query: 15 SLTDHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVVNIHS 74
+L E+ IY++I GIWTRD+K+ + ++ N+V K++ ++ +LIK V ++ +
Sbjct: 95 NLDRDEKTIYEIIEEAHTTGIWTRDLKK--KTSIAQNVVQKALSKMEKGNLIKSVKSVKA 152
Query: 75 KGKKHLMAVEFEPSKEISGGAWYSEGSLDTEF---------------------------- 106
++ M PS++++G +++ G LD F
Sbjct: 153 PAQRTYMLSHLSPSEDVTGNSFFDAGDLDESFRDELLNLIVFWVRTDIEDIASSTRPKYR 212
Query: 107 -----IKVVKSQCLKQIIKLKVATLEGISDSIKRSGAFK----VDLTKQQIEEIVRALVL 157
++ +Q L + T E I + S A K LT +I+ + L+
Sbjct: 213 SLRPDLETDHTQLLYRAGTHSYPTAEEIHQFLTTSSAIKPTKAASLTVAEIQGCIDVLIW 272
Query: 158 DNQIMEVKSNGSGEFTNIPVGKVCYKNVSKGGGGGEPKTGS-LASIPCGVCPQINICKPD 216
D+++ ++ + + V V +K E G+ L PCG CP ++C
Sbjct: 273 DDKLEPIRRHDGAGWGYRTVRGVSFKPPGSVFEEFEEAVGTGLTQAPCGHCPVFDLCHDS 332
Query: 217 GVISPKTCVYYTKWL 231
G I+ CVY+ +WL
Sbjct: 333 GPINAAECVYFEQWL 347
>gi|427797839|gb|JAA64371.1| Putative dna-directed rna polymerase iii subunit rpc6, partial
[Rhipicephalus pulchellus]
Length = 329
Score = 87.8 bits (216), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 60/213 (28%), Positives = 104/213 (48%), Gaps = 23/213 (10%)
Query: 22 LIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVVNIHSKGKKHLM 81
++Y ++ + GIW RD++ ++ L + K +K+L++K LIK V ++ + KK M
Sbjct: 118 VVYKIVEEAGNKGIWIRDIR--IKSGLVLTALNKILKNLESKKLIKAVKSVSASKKKVYM 175
Query: 82 AVEFEPSKEISGGAWYSEGSLDTEFIKVVKSQCLKQIIK------------------LKV 123
EP + ++GGAWYSE ++EF++V+ QC + +IK
Sbjct: 176 LFNLEPDRSVTGGAWYSEQEFESEFVEVLNQQCHRFLIKKLTVAKDTSAGDPLLEKNASF 235
Query: 124 ATLEGISDSIKRSGAFKVDLTKQQIEEIVRALVLDNQIMEVKSNG-SGEFTNIPVGKVCY 182
A+ + + + IK+ G KV L+ + IE I+ L+ D ++ + G ++
Sbjct: 236 ASSKEVWEFIKKLGISKVQLSVEDIEMILSTLIYDGKVEKTVVCGSGSSLSSSSRSASSS 295
Query: 183 KNVSKGGGGGEPKTGS--LASIPCGVCPQINIC 213
+++ EP S L IPCG CP IN C
Sbjct: 296 EDLVNLYRAVEPLIDSTGLMRIPCGTCPVINNC 328
>gi|449015431|dbj|BAM78833.1| RNA polymerase III subunit C34 [Cyanidioschyzon merolae strain 10D]
Length = 371
Score = 87.4 bits (215), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 43/144 (29%), Positives = 83/144 (57%), Gaps = 3/144 (2%)
Query: 16 LTDHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVVNIHSK 75
LT+ ER +Y+ IR+ + GIW R ++ R+ LP V +++K LQ + L+K+V +I +K
Sbjct: 111 LTNTERAVYEQIRAAGEHGIWVRHIRG--RLGLPLADVNRTLKELQRRELVKQVQSIRNK 168
Query: 76 GKKHLMAVEFEPSKEISGGAWY-SEGSLDTEFIKVVKSQCLKQIIKLKVATLEGISDSIK 134
+K M E EPS+E++GG +Y EG+ D EFI ++ ++++ + ++ +
Sbjct: 169 TRKLYMLAELEPSREVTGGPFYDEEGTFDHEFIHRLRELVWRRLLHTPWTSALELTQFLN 228
Query: 135 RSGAFKVDLTKQQIEEIVRALVLD 158
+S + L +E++++ + D
Sbjct: 229 QSNVLRFSLEVADLEQVLQTMCWD 252
>gi|193613196|ref|XP_001944559.1| PREDICTED: probable DNA-directed RNA polymerase III subunit
RPC6-like [Acyrthosiphon pisum]
Length = 318
Score = 87.4 bits (215), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 68/247 (27%), Positives = 116/247 (46%), Gaps = 36/247 (14%)
Query: 3 KRKRPDSNAPSDSLTDHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQN 62
K K P ++ P D+ T+ E +++++IR GIW RD++ + + LP + K +KSL+
Sbjct: 86 KYKGPTASTPGDANTE-ELVVFNLIRDSGRKGIWIRDVRIKSNLGLPR--LKKILKSLET 142
Query: 63 KSLIKEVVNIHSKGKKHLMAVEFEPSKEISGGAWYSEGSLDTEFIKVV-----------K 111
K IK V ++ + K M + EP I+GGAWYS ++EFI+++ K
Sbjct: 143 KKAIKAVKSVAAARKIVYMLFDLEPDSSITGGAWYSNQEFESEFIEILTKHSYKFLEAKK 202
Query: 112 SQCLKQ------IIKLKV--ATLEGISDSIKRSGAFKVDLTKQQIEEIVRALVLDNQIME 163
S+ LK ++K AT + + + I ++G KV LT + I I+ LV D +
Sbjct: 203 SKALKNTTIRSPLVKYNTSYATADRVLEFISKTGISKVRLTVEDIISILDLLVYDG-LAA 261
Query: 164 VKSNGSGEFTNIPVGKVCYKNVSKGGGGGEPKTGSLASIPCGVCPQINICKPDGVISPKT 223
+ N G+ + +N +++ +PCG CP I C ++
Sbjct: 262 KRVNSEGKLEYRSTKTLLSRN-------------AVSFLPCGSCPVIKRCSDANQLNCLN 308
Query: 224 CVYYTKW 230
C + W
Sbjct: 309 CKHMKIW 315
>gi|170095840|ref|XP_001879140.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164645508|gb|EDR09755.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 462
Score = 87.0 bits (214), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 53/183 (28%), Positives = 91/183 (49%), Gaps = 22/183 (12%)
Query: 16 LTDHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVVNIHSK 75
LT E L+ I+ GIWT+ +K + NL ++ + +K+L K LIK V ++
Sbjct: 79 LTGEENLVLSHIKIAATEGIWTKHLK--AKTNLHQTVIDRCLKTLVQKRLIKRVPSVQHP 136
Query: 76 GKKHLMAVEFEPSKEISGGAWYSEGSLDTEFIKVVKSQCLKQIIKL-------------- 121
+K M EPS ++GG WY++ LDTEFI+ + C K I L
Sbjct: 137 TRKIYMLEGLEPSIALTGGPWYTDNELDTEFIQNLTEACFKFISDLSFPKRKEGAPGALY 196
Query: 122 ------KVATLEGISDSIKRSGAFKVDLTKQQIEEIVRALVLDNQIMEVKSNGSGEFTNI 175
+ T + I +S++++ + DLT + +E ++ LVLD +I ++ + GS + +
Sbjct: 197 PISNAPQYPTAQHIRNSLRKAQLTETDLTVEHVEMLLNVLVLDGKIEKLPAFGSALWDSS 256
Query: 176 PVG 178
+G
Sbjct: 257 AIG 259
Score = 45.1 bits (105), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 18/29 (62%)
Query: 203 PCGVCPQINICKPDGVISPKTCVYYTKWL 231
PC +CP CK G ++P+ CVYY WL
Sbjct: 422 PCALCPSFEFCKDGGPVNPRECVYYGDWL 450
>gi|397640426|gb|EJK74113.1| hypothetical protein THAOC_04229 [Thalassiosira oceanica]
Length = 301
Score = 87.0 bits (214), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 43/159 (27%), Positives = 91/159 (57%), Gaps = 5/159 (3%)
Query: 16 LTDHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVVNIHSK 75
L +++Y V+ + + GIWT D++ + +P + + K K+L+N+ LIK + ++ +K
Sbjct: 125 LDGQAKMVYQVVEASGNKGIWTVDVRSQ--TGIPQSNLAKIFKALENRRLIKPIKSVTAK 182
Query: 76 GKKHLMAVEFEPSKEISGGAWYSEGSLDTEFIKVVKS---QCLKQIIKLKVATLEGISDS 132
KK M + PSK+I+GG WY+E D EFI +++ C++++ + TL+ I++
Sbjct: 183 TKKLYMLFDLTPSKDITGGPWYTEYEFDHEFIAELRNFILMCVRRMNRGDGVTLKQIANK 242
Query: 133 IKRSGAFKVDLTKQQIEEIVRALVLDNQIMEVKSNGSGE 171
+ ++ +V L+ +++++++ L D + + GE
Sbjct: 243 MIQANVSRVQLSLDEVQQVLQTLAFDYLVEQRSVTADGE 281
>gi|449546101|gb|EMD37071.1| hypothetical protein CERSUDRAFT_155527 [Ceriporiopsis subvermispora
B]
Length = 481
Score = 87.0 bits (214), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 53/179 (29%), Positives = 86/179 (48%), Gaps = 27/179 (15%)
Query: 16 LTDHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVVNIHSK 75
LTD E L+ I+S + GIWT+ +K + L ++ +S+KSL K LIK V ++
Sbjct: 78 LTDEESLVLSYIQSAGNEGIWTKHLKA--KTELHQTVIDRSLKSLTQKQLIKAVKSVKFP 135
Query: 76 GKKHLMAVEFEPSKEISGGAWYSEGSLDTEFIKVVKSQCLKQIIKLKVATLEGISDSIKR 135
+K M EPS E++GG WY++ LDTEFIK++ S CL+ I + D+ R
Sbjct: 136 TRKIYMLSHLEPSVEMTGGPWYTDNELDTEFIKLLCSACLRFIRDRSTPKTKASEDAPAR 195
Query: 136 SGAF-------------------------KVDLTKQQIEEIVRALVLDNQIMEVKSNGS 169
+ + L + +E ++ LVLD ++ +V + G+
Sbjct: 196 TQPLFSISAAPSYPTAQQILTFLGKSRITETQLAIEHVESLLNVLVLDGEVEKVPAFGA 254
Score = 45.8 bits (107), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 20/33 (60%)
Query: 199 LASIPCGVCPQINICKPDGVISPKTCVYYTKWL 231
LA PC CP CK G ++P+ CVYY +WL
Sbjct: 441 LAQAPCTRCPTFEFCKVGGPVNPQECVYYGEWL 473
>gi|393221910|gb|EJD07394.1| hypothetical protein FOMMEDRAFT_164375 [Fomitiporia mediterranea
MF3/22]
Length = 417
Score = 86.3 bits (212), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 51/172 (29%), Positives = 87/172 (50%), Gaps = 19/172 (11%)
Query: 16 LTDHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVVNIHSK 75
L E L+ + I++ + GIWT+ +K + L ++ + +KSL +K LIK + NI
Sbjct: 81 LAGEELLVLNHIQAASNEGIWTKHLK--TKTELHQTVIDRCLKSLVHKQLIKSITNIKYP 138
Query: 76 GKKHLMAVEFEPSKEISGGAWYSEGSLDTEFIKVVKSQCLKQIIKLKV------------ 123
+K M EPS I+GG WY++ LDTEFIK++ CLK I +
Sbjct: 139 TRKTYMLYHLEPSSSITGGPWYTDSELDTEFIKLLMDACLKFIREKSFPRGKGDALFPIS 198
Query: 124 -----ATLEGISDSIKRSGAFKVDLTKQQIEEIVRALVLDNQIMEVKSNGSG 170
T + I ++++ + +LT++ IE ++ L+ D QI + + G+
Sbjct: 199 SAPAYPTTKQIRTFLQKTRITETELTEEHIEMLLNVLITDGQIERLPAFGAA 250
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 39/78 (50%), Gaps = 10/78 (12%)
Query: 158 DNQIMEVKSNGSGEFTNIPVGKV----CYKNVSKGGGGGEPKTGSLASIPCGVCPQINIC 213
D++ + K N +GE + + VG Y+ + + E + PCG CPQI+ C
Sbjct: 338 DDKEADAKHNAAGEVS-LDVGDFGGTYVYRAIRQ-----ERVVLGWSEAPCGRCPQIDFC 391
Query: 214 KPDGVISPKTCVYYTKWL 231
K G ++P+ C Y+ WL
Sbjct: 392 KDGGPVNPRECQYFGDWL 409
>gi|156087256|ref|XP_001611035.1| RNA polymerase rpc34 subunit containing protein [Babesia bovis
T2Bo]
gi|154798288|gb|EDO07467.1| RNA polymerase rpc34 subunit containing protein [Babesia bovis]
Length = 293
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 55/219 (25%), Positives = 104/219 (47%), Gaps = 17/219 (7%)
Query: 16 LTDHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSL-QNKSLIKEVVNIHS 74
L D E ++ I + D GIWT D+K+ + N +T+S+K L + L+K+V N+H
Sbjct: 88 LHDLEYAVFCAIETAGDRGIWTADIKKICEI--TGNQLTRSLKVLLEQHGLVKQVTNVHQ 145
Query: 75 KGKKHLMAVEFEPSKEISGGAWYSEGSLDTEFIKVVKSQCLKQIIKLKVATLEGISDSIK 134
K +K M +P++E++GG++Y G + ++ ++ Q + K + ++L I++ +K
Sbjct: 146 KSRKLYMLFNVKPARELTGGSFYFNGEFNEMLVEHIQEQVGAYLAKYQGSSLSQITNFLK 205
Query: 135 RSGAFKVDLTKQQIEEIVRALVLDNQIMEVKSNGSGEFTNIPVGKVCYKNVSKGGGGGEP 194
S ++ ++ + I++ L+L+ ++ + SG+ I G SK G
Sbjct: 206 TSDKISGEVLEEDVLSIIQILILEEKVYSAPT-ASGDSIYIWAGSANVNFASKAFGA--- 261
Query: 195 KTGSLASIPCGVCPQINICK--PDGVISPKTCVYYTKWL 231
PC C C + + P C Y +WL
Sbjct: 262 --------PCFKCDVAMSCHLGKENELCPSKCTYLNQWL 292
>gi|268564211|ref|XP_002639044.1| Hypothetical protein CBG22296 [Caenorhabditis briggsae]
Length = 296
Score = 85.9 bits (211), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 64/233 (27%), Positives = 104/233 (44%), Gaps = 39/233 (16%)
Query: 17 TDHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVVNIHSKG 76
T+ E+ IY +I ++ GIW ++++ +N + K++KSL+ K LIK + + S
Sbjct: 82 TEEEQAIYTLIEESKNRGIWIKELREGTGLNQLQ--LRKTLKSLETKKLIKTIKAVGSTK 139
Query: 77 KKHLMAVEFEPSKEISGGAWYSEGSLDTEFIKVVKSQCLKQIIKLKVATLEG-------- 128
K +++ + EP ++GG +YS+ LD+E I + S + LE
Sbjct: 140 KCYIL-FDLEPDMALTGGTFYSDQQLDSELINTLISVSGSYAASRRKLALEEYPNNIQMQ 198
Query: 129 ----------ISDSIKRSGAFKVDLTKQQIEEIVRALVLDNQIMEVKSNGSGEFTNIPVG 178
I+ I V LT + +E I+ VLD I E +++G
Sbjct: 199 RETSYIRPQEIAQFITEKRLLNVPLTIEDLERILEVAVLDGTI-ERRADGKI-------- 249
Query: 179 KVCYKNVSKGGGGGEPKTGSLASIPCGVCPQINICKPDGVISPKTCVYYTKWL 231
+ C S L S+PC VCP + C+P VISP++C Y WL
Sbjct: 250 RACAPRSS---------ISPLVSVPCAVCPVVEDCRPGYVISPQSCDYMKNWL 293
>gi|308497993|ref|XP_003111183.1| hypothetical protein CRE_03668 [Caenorhabditis remanei]
gi|308240731|gb|EFO84683.1| hypothetical protein CRE_03668 [Caenorhabditis remanei]
Length = 296
Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 63/233 (27%), Positives = 104/233 (44%), Gaps = 39/233 (16%)
Query: 17 TDHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVVNIHSKG 76
T+ E++IY +I + GIW ++++ +N + K++KSL+ K LIK + + +
Sbjct: 82 TEEEQVIYGLIEESKTRGIWIKELRDGSGLNQLQ--LRKTLKSLETKKLIKTIKAVGTT- 138
Query: 77 KKHLMAVEFEPSKEISGGAWYSEGSLDTEFIKVVKSQCLKQIIKLKVATLEG-------- 128
KK + + EP ++GG +YS+ LD+E I + S C + +E
Sbjct: 139 KKCYIVFDLEPDMSLTGGTFYSDQQLDSELINTLISVCGSYASSRRKHAIESNPNNIQMQ 198
Query: 129 ----------ISDSIKRSGAFKVDLTKQQIEEIVRALVLDNQIMEVKSNGSGEFTNIPVG 178
I+ I V L+ + +E I+ VLD I E +++G
Sbjct: 199 RESSYIRPQEIAQFITEKRVLNVPLSLEDLERILEVAVLDGTI-ERRADGKI-------- 249
Query: 179 KVCYKNVSKGGGGGEPKTGSLASIPCGVCPQINICKPDGVISPKTCVYYTKWL 231
+ C S L S+PC VCP + C+P VISP++C Y WL
Sbjct: 250 RACAPRSS---------ISPLVSVPCAVCPVVEDCRPGYVISPQSCDYMKNWL 293
>gi|328849993|gb|EGF99164.1| hypothetical protein MELLADRAFT_94867 [Melampsora larici-populina
98AG31]
Length = 511
Score = 85.1 bits (209), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 47/116 (40%), Positives = 72/116 (62%), Gaps = 10/116 (8%)
Query: 4 RKRPDSNAPSDSLTDHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNK 63
++R +SN +D E+L+YD I S + G+WT+ +K R N+ + + K +KSL+NK
Sbjct: 104 QQRANSNMTAD-----EKLVYDSIASSGNTGMWTKTLKA--RTNIHQSNINKFLKSLENK 156
Query: 64 SLIKEVVNIHSKGKKHLMAVEFEPSKEISGGAWYSEGSLDTEFIKVVK---SQCLK 116
+LIK V ++ +K M E +PS E+SGG WY++ LDTEFI V+ QCL+
Sbjct: 157 NLIKSVKSVKFPTRKIYMLSELQPSIELSGGPWYTDNELDTEFITVLLRSIHQCLQ 212
>gi|428176636|gb|EKX45520.1| DNA-directed RNA polymerase III subunit RPC34 [Guillardia theta
CCMP2712]
Length = 162
Score = 84.3 bits (207), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 51/173 (29%), Positives = 85/173 (49%), Gaps = 19/173 (10%)
Query: 63 KSLIKEVVNIHSKGKKHLMAVEFEPSKEISGGAWYSEGSLDTEFIKVVK--SQCLKQIIK 120
+ LIK+ ++H+ KK + E EPS E++GG WY+ G LDTE ++ + C + +
Sbjct: 3 RKLIKDFTSVHTGKKKMYILNELEPSAELTGGNWYTSGELDTEMVESSAQIALCFFNMRQ 62
Query: 121 LKVATLEGISDSIKRSGAFKVDLTKQQIEEIVRALVLDNQIMEVKSNGSGEFTNIPVGKV 180
K ++ + D +K K DLT +++ ++V L+ D Q+ V+S N+ G+
Sbjct: 63 RKGGSVAEVRDFLKAKDVIKCDLTMEEVFQLVETLLYDGQVERVRSE------NVSPGEA 116
Query: 181 CYKNVSKGGGGGEPKTG--SLASIPCGVCPQINICKPDGVISPKTCVYYTKWL 231
++ V++ PK L+SIP +CP P P C Y WL
Sbjct: 117 TFRVVNR------PKVSLDHLSSIPTSICPTAQSSFPP---KPSDCPYVDYWL 160
>gi|341883104|gb|EGT39039.1| hypothetical protein CAEBREN_20869 [Caenorhabditis brenneri]
Length = 296
Score = 84.3 bits (207), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 61/233 (26%), Positives = 105/233 (45%), Gaps = 39/233 (16%)
Query: 17 TDHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVVNIHSKG 76
T+ E++IY +I + GIW ++++ +N + K++KSL+ K LIK + + +
Sbjct: 82 TEEEQVIYGLIEESKTRGIWIKELRDGSGLNQLQ--LRKTLKSLETKKLIKTIKAVGTTK 139
Query: 77 KKHLMAVEFEPSKEISGGAWYSEGSLDTEFIKVVKSQCLKQIIKLKVATLEG-------- 128
K +++ + EP ++GG +YS+ LD+E I + S C + +E
Sbjct: 140 KCYIL-FDMEPDMSLTGGTFYSDQQLDSELINTLISICGSYAASRRKHAIEANPNNIQLQ 198
Query: 129 ----------ISDSIKRSGAFKVDLTKQQIEEIVRALVLDNQIMEVKSNGSGEFTNIPVG 178
I+ I V L+ + ++ I+ VLD I E +++G
Sbjct: 199 REESYIRPQEIAQFITEKRILNVPLSVEDLDRILEVAVLDGSI-ERRADGKI-------- 249
Query: 179 KVCYKNVSKGGGGGEPKTGSLASIPCGVCPQINICKPDGVISPKTCVYYTKWL 231
+ C S L S+PC VCP + C+P VISP++C Y WL
Sbjct: 250 RACAPRSS---------ISPLVSVPCAVCPVVEDCRPGYVISPQSCDYMKNWL 293
>gi|237844055|ref|XP_002371325.1| DNA-directed RNA polymerases III, 39 kDa polypeptide, putative
[Toxoplasma gondii ME49]
gi|211968989|gb|EEB04185.1| DNA-directed RNA polymerases III, 39 kDa polypeptide, putative
[Toxoplasma gondii ME49]
gi|221485540|gb|EEE23821.1| DNA-directed RNA polymerases III, 39 kDa polypeptide, putative
[Toxoplasma gondii GT1]
gi|221506390|gb|EEE32025.1| DNA-directed RNA polymerases III, 39 kDa polypeptide, putative
[Toxoplasma gondii VEG]
Length = 325
Score = 84.0 bits (206), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 56/217 (25%), Positives = 101/217 (46%), Gaps = 24/217 (11%)
Query: 23 IYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQN-KSLIKEVVNIHSKGKKHLM 81
+Y I G+WT D+++ L +I+ +S+K L + LIK V +IH K +K +
Sbjct: 105 VYCAIEQAGTTGVWTADLRKS--TGLQTHIIQRSVKQLCDFLKLIKPVKSIHVKNRKMYI 162
Query: 82 AVEFEPSKEISGGAWYSEGSLDTEFIKVVKSQCLKQIIKLKVATLEGISDSIKRSGAFK- 140
EP+KEI+GG++YS G + ++ ++ Q + A+ + ++ + SG
Sbjct: 163 LAHLEPAKEIAGGSFYSNGEFNEHLVEHLRDQTRTFLQNAGTASFQALAAYTRSSGERNG 222
Query: 141 VDLTKQQIEEIVRALVLDNQIMEVKSNGSGEFTNIPVGKVCYKNVSKGGGGGEPKTGSLA 200
+ + +E+++ L + +I V + G F SK +P +
Sbjct: 223 ATFSDEDLEKVLNTLEFEQKICRVPTLGQPTFV-----------WSKFPALYDP-----S 266
Query: 201 SIPCGVCPQINIC--KPDGVISPKTCVYYTKW--LDF 233
++PC CP + C + + ISP C Y + W LDF
Sbjct: 267 AVPCSTCPVKSSCYSREENKISPANCEYLSSWLGLDF 303
>gi|401412778|ref|XP_003885836.1| putative DNA-directed RNA polymerases III, 39 kDa polypeptide
[Neospora caninum Liverpool]
gi|325120256|emb|CBZ55810.1| putative DNA-directed RNA polymerases III, 39 kDa polypeptide
[Neospora caninum Liverpool]
Length = 311
Score = 83.6 bits (205), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 56/217 (25%), Positives = 101/217 (46%), Gaps = 24/217 (11%)
Query: 23 IYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQN-KSLIKEVVNIHSKGKKHLM 81
+Y I G+WT D+++ L +I+ +S+K L + LIK V +IH K +K +
Sbjct: 97 VYCAIEQAGTTGVWTADLRKS--TGLQTHIIQRSVKQLCDFLKLIKPVKSIHVKNRKMYI 154
Query: 82 AVEFEPSKEISGGAWYSEGSLDTEFIKVVKSQCLKQIIKLKVATLEGISDSIKRSGAFK- 140
EP+KEI+GG++YS G + ++ ++ Q + A+ + ++ + SG
Sbjct: 155 LAHLEPAKEIAGGSFYSNGEFNEHLVEHLREQTRTFLQNAGTASFQALAAYTRSSGERNG 214
Query: 141 VDLTKQQIEEIVRALVLDNQIMEVKSNGSGEFTNIPVGKVCYKNVSKGGGGGEPKTGSLA 200
+ + +E+++ +L + +I V + G F SK +P +
Sbjct: 215 ATFSDEDLEKVLNSLEFEQKICRVPTLGQPTFV-----------WSKFPALYDP-----S 258
Query: 201 SIPCGVCPQINIC--KPDGVISPKTCVYYTKW--LDF 233
+PC CP + C + + ISP C Y + W LDF
Sbjct: 259 GLPCSTCPVKSSCYSREENKISPANCEYLSSWLGLDF 295
>gi|403161593|ref|XP_003321906.2| hypothetical protein PGTG_03443 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|375171846|gb|EFP77487.2| hypothetical protein PGTG_03443 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 525
Score = 83.6 bits (205), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 43/102 (42%), Positives = 65/102 (63%), Gaps = 2/102 (1%)
Query: 15 SLTDHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVVNIHS 74
S++ E+L+YD I + + GIWT+ +K +R N+ +TK IK+L+NK+LIK V ++
Sbjct: 113 SMSTDEKLVYDNISNAGNTGIWTKTLK--MRTNIHQTNLTKCIKALENKNLIKAVKSVKF 170
Query: 75 KGKKHLMAVEFEPSKEISGGAWYSEGSLDTEFIKVVKSQCLK 116
+K + E +PS E SGG WY++ LDTEFI V+ LK
Sbjct: 171 PTRKIYILSELQPSVEHSGGPWYTDNELDTEFIGVLLQSILK 212
>gi|189208642|ref|XP_001940654.1| DNA-directed rna polymerase III subunit [Pyrenophora
tritici-repentis Pt-1C-BFP]
gi|187976747|gb|EDU43373.1| DNA-directed rna polymerase III subunit [Pyrenophora
tritici-repentis Pt-1C-BFP]
Length = 362
Score = 83.2 bits (204), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 64/276 (23%), Positives = 118/276 (42%), Gaps = 76/276 (27%)
Query: 16 LTDHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVVNIHSK 75
LT ERL+Y I Q GIW++ ++ + N+ +TK +KSL++K L++ V+++
Sbjct: 98 LTPDERLLYHHIDQVQADGIWSKALRN--KTNVTQQTLTKCLKSLESKDLVQSVMSVKYP 155
Query: 76 GKKHLMAVEFEPSKEISGGAWYSEGSLDTEFIKVV---------KSQCLK---------- 116
+K + +PS++I+GG W ++G DT I+ + C+K
Sbjct: 156 NRKMYLLKHLKPSEDIAGGPWQTDGEFDTALIETISGAVAQYVEHETCIKVPGNWNDYDR 215
Query: 117 --QIIKLKVATLEGISD-----------SIKRSGAFKV---------------------- 141
I + K + L+ + D + AF++
Sbjct: 216 SVAIAQKKASALDAVRDIEEAPAVRSYKPPRDPNAFRIVHRHKPHYPTAASVAEWLNGKE 275
Query: 142 -----DLTKQQIEEIVRALVLDNQIMEVKSNGSGEFTNIPVGKVCYKNVSKGGGGGEPKT 196
+ ++ +E+++ +V ++++ K++G+ T V K V G
Sbjct: 276 LIKAKTVREEDMEQLLEMMVAEDRLE--KTSGTNYRT---VLKATNTKVYNG-------- 322
Query: 197 GSLASIPCGVCPQINICKPDGVISPKTCVYYTKWLD 232
PCG CP + C +G IS +TCVY+ +WLD
Sbjct: 323 --FVDAPCGNCPVFDQCGDEGEISARTCVYFGQWLD 356
>gi|17509641|ref|NP_491427.1| Protein W09C3.4 [Caenorhabditis elegans]
gi|20139429|sp|P91529.1|RPC6_CAEEL RecName: Full=Probable DNA-directed RNA polymerase III subunit
RPC6; Short=RNA polymerase III subunit C6; AltName:
Full=DNA-directed RNA polymerase III subunit F
gi|373218920|emb|CCD64234.1| Protein W09C3.4 [Caenorhabditis elegans]
Length = 296
Score = 82.8 bits (203), Expect = 9e-14, Method: Compositional matrix adjust.
Identities = 59/235 (25%), Positives = 104/235 (44%), Gaps = 43/235 (18%)
Query: 17 TDHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVVNIHSKG 76
T+ E++IY +I + GIW ++++ +N + K++KSL+ K LIK + + +
Sbjct: 82 TEEEQVIYSLIEESKTRGIWIKELREGSGLNQLQ--LRKTLKSLETKKLIKTIKAVGTTR 139
Query: 77 KKHLMAVEFEPSKEISGGAWYSEGSLDTEFIKVVKSQC------------------LKQI 118
K +++ EP ++GG +YS+ LD+E I + S C ++
Sbjct: 140 KCYIL-FSIEPDMSLTGGTFYSDQQLDSELINTLISVCGSYAASRRKHAIDENPNNIQMQ 198
Query: 119 IKLKVATLEGISDSIKRSGAFKVDLTKQQIEEIVRALVLDNQIMEVKSNGSGEFTNIPVG 178
+ + I+ I V L+ + +E I+ VLD I + G+ P
Sbjct: 199 REASYIRPQEIAQFITEKRVLNVPLSLEDLERILEVAVLDGTI---ERRADGKIRACP-- 253
Query: 179 KVCYKNVSKGGGGGEPKTG--SLASIPCGVCPQINICKPDGVISPKTCVYYTKWL 231
P++ L S+PC +CP + C+P VISP++C Y WL
Sbjct: 254 ---------------PRSSISPLVSVPCAICPVVEDCRPGYVISPQSCDYMKNWL 293
>gi|149041226|gb|EDL95159.1| polymerase (RNA) III (DNA directed) polypeptide F (predicted),
isoform CRA_b [Rattus norvegicus]
Length = 293
Score = 82.8 bits (203), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 41/123 (33%), Positives = 74/123 (60%), Gaps = 3/123 (2%)
Query: 18 DHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVVNIHSKGK 77
+ E+L+Y +I + GIW+RD++ + NLP + K +K+L++K LIK V ++ + K
Sbjct: 145 NQEKLVYQIIEDAGNKGIWSRDIR--YKSNLPLTEINKILKNLESKKLIKAVKSVAASKK 202
Query: 78 KHLMAVEFEPSKEISGGAWYSEGSLDTEFIKVVKSQCLKQI-IKLKVATLEGISDSIKRS 136
K M +P + ++GGAWYS+ ++EF++V+ QC K + K + A + I+R+
Sbjct: 203 KVYMLYNLQPDRSVTGGAWYSDQDFESEFVEVLNQQCFKFLQSKAETARESKQNPVIQRN 262
Query: 137 GAF 139
+F
Sbjct: 263 SSF 265
>gi|258597706|ref|XP_001348381.2| RNA polymerase subunit, putative [Plasmodium falciparum 3D7]
gi|255528800|gb|AAN36820.2| RNA polymerase subunit, putative [Plasmodium falciparum 3D7]
Length = 311
Score = 82.8 bits (203), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 53/219 (24%), Positives = 105/219 (47%), Gaps = 19/219 (8%)
Query: 16 LTDHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVVNIHSK 75
L+D + LI+ + + Q+ GIWT D++++ ++ + V K +K L LIK+V NIH K
Sbjct: 83 LSDIDFLIFTKVENSQNNGIWTADLRKQTKLLIHQ--VQKGVKLLCENKLIKQVNNIHVK 140
Query: 76 GKKHLMAVEFEPSKEISGGAWYSEGSLDTEFIKVVKSQCLKQIIKLKVATLEGISDSIKR 135
+K + + E S+++ GG++Y++G + + + ++ + +++ + + IK+
Sbjct: 141 NRKMYILYDLEASEKVIGGSFYTDGEFNKKVVDYIRENICFYLYNNNNSSVPSVINYIKK 200
Query: 136 SGAFKVDLTKQQIEEIVRALVLDNQIMEVKSNGSGEFTNIPVGKVCYKNVSKGGGGGEPK 195
++ I +++ L + +I KSN E + Y N K
Sbjct: 201 LNNSVDYFSENDIYRVIKTLSYEERINIYKSNNDEEL-------IYYYN--------NEK 245
Query: 196 TGSLASIPCGVCPQINICKPD--GVISPKTCVYYTKWLD 232
L + PC C N C D I+P++C+Y +L+
Sbjct: 246 KNFLYNFPCFSCNLFNKCNSDINTTINPRSCMYLNFYLN 284
>gi|326430685|gb|EGD76255.1| hypothetical protein PTSG_11665 [Salpingoeca sp. ATCC 50818]
Length = 320
Score = 82.4 bits (202), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 60/235 (25%), Positives = 99/235 (42%), Gaps = 35/235 (14%)
Query: 16 LTDHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSI-KSLQNKSLIKEVVNIHS 74
L ER IY + + GIW K + PD K + + L +LIKE +++
Sbjct: 104 LEPDERAIYSAVEAAGTAGIWNARFKSLI----PDRKRLKRVLQQLTRDNLIKEFKPVNN 159
Query: 75 KGKKHLMAVEFEPSKEISGGAWYSEGSLDTEFIKVVKSQCLKQI---------------- 118
K H + + EP + +SGG +Y D EFI ++ L +
Sbjct: 160 SKKPHYILYDLEPDESVSGGVFYDGDEFDREFINNLRMVILLFLKKRFKEAAKEENPYLR 219
Query: 119 IKLKVATLEGISDSIKRSGAFKVDLTKQQIEEIVRALVLDNQIMEVKSNGSGEFTNIPVG 178
K T + I+ + S K+ L+ E+++ LV D ++ N P+
Sbjct: 220 FKHSYITPDEIASKLNASKVIKITLSPADCEKVLSTLVTDRLVI----------ANDPLS 269
Query: 179 KVCYKNVSKGGGGGEPKTGSLASIPCGVCPQINICKPDGVISPKTCVYYTKWLDF 233
+ SK + +L+++PCG+CP + C DGV++P C Y +WL F
Sbjct: 270 SIKAYRFSKL----DRHPSALSAVPCGICPVRHNCTLDGVVNPVGCKYLDEWLAF 320
>gi|148696517|gb|EDL28464.1| polymerase (RNA) III (DNA directed) polypeptide F, isoform CRA_d
[Mus musculus]
Length = 287
Score = 82.4 bits (202), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 41/123 (33%), Positives = 74/123 (60%), Gaps = 3/123 (2%)
Query: 18 DHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVVNIHSKGK 77
+ E+L+Y +I + GIW+RD++ + NLP + K +K+L++K LIK V ++ + K
Sbjct: 125 NQEKLVYQIIEDAGNKGIWSRDIR--YKSNLPLTEINKILKNLESKKLIKAVKSVAASKK 182
Query: 78 KHLMAVEFEPSKEISGGAWYSEGSLDTEFIKVVKSQCLKQI-IKLKVATLEGISDSIKRS 136
K M +P + ++GGAWYS+ ++EF++V+ QC K + K + A + I+R+
Sbjct: 183 KVYMLYNLQPDRSVTGGAWYSDQDFESEFVEVLNQQCFKFLQSKAETARESKQNPVIQRN 242
Query: 137 GAF 139
+F
Sbjct: 243 SSF 245
>gi|432948705|ref|XP_004084130.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC6-like,
partial [Oryzias latipes]
Length = 191
Score = 82.4 bits (202), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 36/99 (36%), Positives = 63/99 (63%), Gaps = 2/99 (2%)
Query: 18 DHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVVNIHSKGK 77
+ E+L+Y +I + GIW+RD++ + NLP + K +K+L++K LIK V ++ + K
Sbjct: 90 NQEKLVYQIIEDAGNKGIWSRDIR--FKSNLPLTEINKILKNLESKKLIKAVKSVAASKK 147
Query: 78 KHLMAVEFEPSKEISGGAWYSEGSLDTEFIKVVKSQCLK 116
K M +P + ++GGAWYS+ ++EF++V+ QC K
Sbjct: 148 KVYMLYNVQPDRSVTGGAWYSDQDFESEFVEVLNQQCFK 186
>gi|119630644|gb|EAX10239.1| polymerase (RNA) III (DNA directed) polypeptide F, 39 kDa, isoform
CRA_a [Homo sapiens]
Length = 153
Score = 82.4 bits (202), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 41/123 (33%), Positives = 74/123 (60%), Gaps = 3/123 (2%)
Query: 18 DHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVVNIHSKGK 77
+ E+L+Y +I + GIW+RD++ + NLP + K +K+L++K LIK V ++ + K
Sbjct: 6 NQEKLVYQIIEDAGNKGIWSRDIR--YKSNLPLTEINKILKNLESKKLIKAVKSVAASKK 63
Query: 78 KHLMAVEFEPSKEISGGAWYSEGSLDTEFIKVVKSQCLKQI-IKLKVATLEGISDSIKRS 136
K M +P + ++GGAWYS+ ++EF++V+ QC K + K + A + I+R+
Sbjct: 64 KVYMLYNLQPDRSVTGGAWYSDQDFESEFVEVLNQQCFKFLQSKAETARESKQNPMIQRN 123
Query: 137 GAF 139
+F
Sbjct: 124 SSF 126
>gi|148696516|gb|EDL28463.1| polymerase (RNA) III (DNA directed) polypeptide F, isoform CRA_c
[Mus musculus]
Length = 238
Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 36/99 (36%), Positives = 63/99 (63%), Gaps = 2/99 (2%)
Query: 18 DHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVVNIHSKGK 77
+ E+L+Y +I + GIW+RD++ + NLP + K +K+L++K LIK V ++ + K
Sbjct: 90 NQEKLVYQIIEDAGNKGIWSRDIR--YKSNLPLTEINKILKNLESKKLIKAVKSVAASKK 147
Query: 78 KHLMAVEFEPSKEISGGAWYSEGSLDTEFIKVVKSQCLK 116
K M +P + ++GGAWYS+ ++EF++V+ QC K
Sbjct: 148 KVYMLYNLQPDRSVTGGAWYSDQDFESEFVEVLNQQCFK 186
>gi|430813513|emb|CCJ29148.1| unnamed protein product [Pneumocystis jirovecii]
Length = 322
Score = 81.6 bits (200), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 58/215 (26%), Positives = 100/215 (46%), Gaps = 32/215 (14%)
Query: 33 MGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVVNIHSKGKKHLMAVEFEPSKEIS 92
+GIW+R +K ++ NL ++ +++KSL++K LIK V ++ + +K M + PS E++
Sbjct: 122 LGIWSRTIK--IKTNLHTTVLNRALKSLESKQLIKAVKSVKNPTRKIFMIYDLVPSIELT 179
Query: 93 GGAWYSEGSLDTEFIKVVKSQCLKQIIKLK---------------VATLEGISDSIKRSG 137
GG W+++ +D EFI+ ++ K I+ T E I +K SG
Sbjct: 180 GGPWFTDQEMDLEFIERLQGALYKYILSHSYPKSQDTLFSPSYSGYLTAEQIHSWLKNSG 239
Query: 138 AFKVDLTKQQIEEIVRALVLDNQIMEVKSNGSGEFTNIPVGKVCYKNVSKGGGGGEPKTG 197
+VDL + ++ LV D +I E NG+ F + +V +KN+
Sbjct: 240 ITQVDLELSDVVNLLNVLVYDRKI-EYCQNGTA-FK--ALRRVNHKNIH----------- 284
Query: 198 SLASIPCGVCPQINICKPDGVISPKTCVYYTKWLD 232
C C N+ + S C+Y+ WLD
Sbjct: 285 DFTETACESCLINNLFFKEKNTSNNFCIYFRSWLD 319
>gi|426198093|gb|EKV48019.1| hypothetical protein AGABI2DRAFT_202311 [Agaricus bisporus var.
bisporus H97]
Length = 464
Score = 81.6 bits (200), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 48/181 (26%), Positives = 90/181 (49%), Gaps = 23/181 (12%)
Query: 16 LTDHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVVNIHSK 75
L E L++ I++ GIWT+ +K + NL I+ +S+K+L K L+K V ++
Sbjct: 79 LNGEENLVFSHIKAAGSEGIWTKHLK--TKTNLHQTIIDRSLKTLTQKRLVKRVPSVQHP 136
Query: 76 GKKHLMAVEFEPSKEISGGAWYSEGSLDTEFIKVVKSQCLKQIIKL-------------- 121
+K M EPS ++GG WY++ LDTEFI+ + C K +
Sbjct: 137 TRKIYMLEGLEPSISLTGGPWYTDNELDTEFIQHLTEVCYKFVRDTTFPKRKEGGGEGVL 196
Query: 122 -------KVATLEGISDSIKRSGAFKVDLTKQQIEEIVRALVLDNQIMEVKSNGSGEFTN 174
+ T + I S+K++ + +L+ + +E ++ L+LD +I ++ + G+ + +
Sbjct: 197 YAISNPPRYPTAQDIRSSLKKAKLTETELSVEHVEMLLNVLILDGKIEKLPAFGTSMWDS 256
Query: 175 I 175
I
Sbjct: 257 I 257
Score = 46.2 bits (108), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 20/29 (68%)
Query: 203 PCGVCPQINICKPDGVISPKTCVYYTKWL 231
PC +CP + CK G ++PK CVYY +WL
Sbjct: 424 PCTLCPSFDFCKGGGPVNPKDCVYYGEWL 452
>gi|409080140|gb|EKM80501.1| hypothetical protein AGABI1DRAFT_58346 [Agaricus bisporus var.
burnettii JB137-S8]
Length = 464
Score = 81.6 bits (200), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 48/181 (26%), Positives = 90/181 (49%), Gaps = 23/181 (12%)
Query: 16 LTDHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVVNIHSK 75
L E L++ I++ GIWT+ +K + NL I+ +S+K+L K L+K V ++
Sbjct: 79 LNGEENLVFSHIKAAGSEGIWTKHLK--TKTNLHQTIIDRSLKTLTQKRLVKRVPSVQHP 136
Query: 76 GKKHLMAVEFEPSKEISGGAWYSEGSLDTEFIKVVKSQCLKQIIKL-------------- 121
+K M EPS ++GG WY++ LDTEFI+ + C K +
Sbjct: 137 TRKIYMLEGLEPSISLTGGPWYTDNELDTEFIQHLTEVCYKFVRDTTFPKRKEGGGEGVL 196
Query: 122 -------KVATLEGISDSIKRSGAFKVDLTKQQIEEIVRALVLDNQIMEVKSNGSGEFTN 174
+ T + I S+K++ + +L+ + +E ++ L+LD +I ++ + G+ + +
Sbjct: 197 YAISNPPRYPTAQDIRSSLKKAKLTETELSVEHVEMLLNVLILDGKIEKLPAFGTSMWDS 256
Query: 175 I 175
I
Sbjct: 257 I 257
Score = 46.2 bits (108), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 20/29 (68%)
Query: 203 PCGVCPQINICKPDGVISPKTCVYYTKWL 231
PC +CP + CK G ++PK CVYY +WL
Sbjct: 424 PCTLCPSFDFCKGGGPVNPKDCVYYGEWL 452
>gi|403367656|gb|EJY83651.1| DNA-directed RNA polymerase III, subunit C34 [Oxytricha trifallax]
Length = 289
Score = 81.3 bits (199), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 60/222 (27%), Positives = 111/222 (50%), Gaps = 16/222 (7%)
Query: 16 LTDHERLIYDVIRSKQDMGIWTRDMKRELRVN-LPDNIVTKSIKSLQNKSLIKEVVNIHS 74
L + L+Y +I D G +D+K +L I+TK +K ++ K LIK++ +++
Sbjct: 76 LLPEDVLVYQMIEESGDNGTQIQDLKIKLTPQGFNSVILTKILKKIEKKGLIKKIKSLNK 135
Query: 75 KGKKHLMAVEFEPSKEISGGAWYSEGSLDTEFIKVVKSQCLKQIIKLKVATLEGISDSIK 134
++ M +E EPS ++GG E + D + I++++ + L+ + K + +S IK
Sbjct: 136 NNRQVWMLMEIEPSINVTGGLIGQE-NFDLDSIEIIQERLLEYLRKQGPTSYRELSLHIK 194
Query: 135 RSGAFK--VDLTKQQIEEIVRALVLDNQIMEVKSN-GS--GEFTNIPVGKVCYKNVSKGG 189
+ G + + + I++I++ LV D +I ++++ GS G NI V K
Sbjct: 195 QCGVIQKGSEFRDEDIKQIIQVLVYDQKIEQIQTGLGSMIGGADNI---------VYKLS 245
Query: 190 GGGEPKTGSLASIPCGVCPQINICKPDGVISPKTCVYYTKWL 231
P+ IPC CP C P+ +++PK+C Y +WL
Sbjct: 246 NNKYPQQVYYTQIPCAHCPVRKECGPNNLVNPKSCQYINEWL 287
>gi|299747323|ref|XP_001836956.2| RNA polymerase III subunit Rpc34 [Coprinopsis cinerea okayama7#130]
gi|298407467|gb|EAU84573.2| RNA polymerase III subunit Rpc34 [Coprinopsis cinerea okayama7#130]
Length = 478
Score = 80.5 bits (197), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 48/174 (27%), Positives = 87/174 (50%), Gaps = 22/174 (12%)
Query: 16 LTDHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVVNIHSK 75
L+ E L+ I++ + GIWT+ +K + NL I+ + +K+L K LIK V ++
Sbjct: 81 LSGEENLVLSHIKNSGNEGIWTKHLK--AKTNLHQTIIDRCLKTLIQKRLIKRVPSVQHP 138
Query: 76 GKKHLMAVEFEPSKEISGGAWYSEGSLDTEFIKVVKSQCLKQIIKLKV------------ 123
+K M EPS ++GG WY++ LDTEFI+ + C K I +
Sbjct: 139 TRKIYMLEGLEPSIALTGGPWYTDNELDTEFIQHLMDACYKFISDISFPKRRDAPEGALF 198
Query: 124 --------ATLEGISDSIKRSGAFKVDLTKQQIEEIVRALVLDNQIMEVKSNGS 169
+ + I +S++++ + DL+ + +E ++ LVLD +I + + G+
Sbjct: 199 PISNAPDYPSAQHIRNSLRKARLTETDLSVEHVESLLNVLVLDGKIEALPAFGT 252
Score = 46.6 bits (109), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 21/32 (65%)
Query: 200 ASIPCGVCPQINICKPDGVISPKTCVYYTKWL 231
A PC +CP + CK +G ++P+ C YY +WL
Sbjct: 432 AQAPCALCPSFDFCKAEGPVNPQECDYYDEWL 463
>gi|392560402|gb|EIW53585.1| hypothetical protein TRAVEDRAFT_134281 [Trametes versicolor
FP-101664 SS1]
Length = 498
Score = 80.1 bits (196), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 51/179 (28%), Positives = 87/179 (48%), Gaps = 27/179 (15%)
Query: 16 LTDHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVVNIHSK 75
++ E +I I++ GIWT+ +K + L ++ + +KSL K+LIK V ++
Sbjct: 79 MSGEESMILSYIQAAATEGIWTKHLKA--KTELHQTVIDRCLKSLTQKALIKAVKSVKFP 136
Query: 76 GKKHLMAVEFEPSKEISGGAWYSEGSLDTEFIKVVKSQCLKQIIKLKVATLEGISDS--- 132
+K M EPS E++GG WY++ LDTEFIK++ S CL+ I+ K A + DS
Sbjct: 137 TRKIYMLAHLEPSVEMTGGPWYTDNELDTEFIKLLCSACLR-FIRDKSAPKQKGGDSESS 195
Query: 133 ---------------------IKRSGAFKVDLTKQQIEEIVRALVLDNQIMEVKSNGSG 170
+ +S + L+ + +E ++ LVLD + V + G+
Sbjct: 196 NLLYPISASPSYPTAQQLLAFLSKSRITETQLSVEHVEMLLNVLVLDGDVERVPAFGAA 254
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 21/36 (58%)
Query: 196 TGSLASIPCGVCPQINICKPDGVISPKTCVYYTKWL 231
G L+ PC CP + CKP G ++P+ C YY WL
Sbjct: 455 AGGLSQTPCVRCPAADFCKPGGPVNPQECTYYDTWL 490
>gi|119188853|ref|XP_001245033.1| hypothetical protein CIMG_04474 [Coccidioides immitis RS]
Length = 289
Score = 79.7 bits (195), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 38/93 (40%), Positives = 59/93 (63%), Gaps = 2/93 (2%)
Query: 15 SLTDHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVVNIHS 74
+L ERL+Y+VI S G+WT+ +K R NL I+ + +KSL+ K+ IK V N+
Sbjct: 95 NLNAEERLVYNVIHSTGRQGVWTKTIK--ARTNLHQTIMNRCLKSLEAKNYIKSVRNVKY 152
Query: 75 KGKKHLMAVEFEPSKEISGGAWYSEGSLDTEFI 107
+K M +PS+E++GGAW+++G LD +FI
Sbjct: 153 PQRKIYMLAGLQPSEEVTGGAWFTDGVLDADFI 185
>gi|219115902|ref|XP_002178746.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217409513|gb|EEC49444.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 330
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 40/141 (28%), Positives = 81/141 (57%), Gaps = 5/141 (3%)
Query: 21 RLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVVNIHSKGKKHL 80
R++Y I +MGIWT+D++ ++ ++ + K K+L+++ LIK V ++++K KK
Sbjct: 131 RMVYQYIERAGNMGIWTKDLR--VQTSIQQQALNKIFKTLESRQLIKPVKSVNAKSKKLY 188
Query: 81 MAVEFEPSKEISGGAWYSEGSLDTEFIKVVKS---QCLKQIIKLKVATLEGISDSIKRSG 137
M + PS E++GG WYS+ D EFI +++ C++++ TL + + + +
Sbjct: 189 MLYDLTPSTELTGGVWYSDMEFDHEFISELRNFLLSCVRRMNGGNGVTLPEVREKMIQGK 248
Query: 138 AFKVDLTKQQIEEIVRALVLD 158
+V L ++ ++++ LV D
Sbjct: 249 VSRVQLAINELRQLMQTLVYD 269
>gi|118352502|ref|XP_001009522.1| RNA polymerase Rpc34 subunit family protein [Tetrahymena
thermophila]
gi|89291289|gb|EAR89277.1| RNA polymerase Rpc34 subunit family protein [Tetrahymena
thermophila SB210]
Length = 286
Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 62/230 (26%), Positives = 108/230 (46%), Gaps = 24/230 (10%)
Query: 10 NAPSDSLTDHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEV 69
N + L E +Y +I ++ GI +D+ + + +TK + L+ K+ IK V
Sbjct: 72 NVAASDLPQQEFQVYKIIFQAKNKGIDRKDIGN--KTGIATGTLTKILNQLKKKNWIKSV 129
Query: 70 VNIHSKGKKHLMAVEFEPSKEISGGAWYSEGSLDTEFIKVVKSQCLKQIIKLKVATLEGI 129
+S GK E S+ ISGG WY +G L+ + I + S+ + + T E I
Sbjct: 130 KGANSTGK--------ELSESISGGIWYKDGVLNKDLIDELCSKIENHMNHNPIMTEEQI 181
Query: 130 SDSIKRSGAFKVDLTKQQIEEIVRALVLDNQIMEVKSNGSGEF---------TNIPVGKV 180
++ + + ++L ++ + +I+ L+ D++I +VK+ + + I ++
Sbjct: 182 IQLLRVNSS--INLEQRHVLQIINLLLFDDKIEKVKTITTSTNSSTAQKQGTSQIQKYRL 239
Query: 181 CYKNVSKGGGGGEPKTGSLASIPCGVCPQINICKPDGVISPKTCVYYTKW 230
N SK P +L PCG CP IN C P G ISP+ C+Y+ W
Sbjct: 240 SNWNKSKDHISTIP---ALTKTPCGHCPLINECVPGGKISPENCIYFNDW 286
>gi|357155005|ref|XP_003576976.1| PREDICTED: DNA-directed RNA polymerase III subunit rpc6-like
[Brachypodium distachyon]
Length = 296
Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 57/213 (26%), Positives = 95/213 (44%), Gaps = 15/213 (7%)
Query: 34 GIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVVNIHSKGKKH------LMAVEFEP 87
G+ + D++ L +L VT+ +L ++K+V + S ++ M EP
Sbjct: 84 GMSSGDLQAAL--DLTPATVTRLTNALVVLGVLKKVPAVRSPRFRNRQAPVVFMDARVEP 141
Query: 88 SKEISGGA-WY-SEGSLDTEFIKVVKSQCLKQIIKL----KVATLEGISDSIKRSGAFKV 141
S EI+GG W+ +G +D + + + CL QI +L ++ + G
Sbjct: 142 SAEITGGGRWHHGDGKVDAPAVALARRACLDQIDRLPGPAATPSMVHAGLVGRGGGGPAG 201
Query: 142 DLTKQQIEEIVRALVLDNQIMEVKSNGSGEFTNIPVGKVCYKNVSKGGGGGEPKTGSLAS 201
L+ + E++RA+ L + E ++N E G G++
Sbjct: 202 VLSVGHVAEVLRAMALGGVLEECRNNTGEEEGEFGGLGQGRCATGARRAGAPAWAGAMEE 261
Query: 202 IPCGVCPQINICKPD-GVISPKTCVYYTKWLDF 233
PCGVCP I C PD G++SP TCVY+ KWL+
Sbjct: 262 FPCGVCPVIGQCSPDGGLVSPATCVYFNKWLEM 294
>gi|224012371|ref|XP_002294838.1| RPC6, dna-directed RNA polymerases III 39 kDa polypeptide
[Thalassiosira pseudonana CCMP1335]
gi|220969277|gb|EED87618.1| RPC6, dna-directed RNA polymerases III 39 kDa polypeptide
[Thalassiosira pseudonana CCMP1335]
Length = 237
Score = 79.0 bits (193), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 45/161 (27%), Positives = 87/161 (54%), Gaps = 11/161 (6%)
Query: 21 RLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVVNIHSKGKKHL 80
+++Y V+ + GIWT D++ ++ N+ +TK K L+ + LIK + + +K KK
Sbjct: 35 KMVYQVVEGAGNKGIWTVDVR--VQTNIQQATLTKIFKQLETRRLIKPIKAVTAKTKKLY 92
Query: 81 MAVEFEPSKEISGGAWYSEGSLDTEFIKVVKS---QCLKQI----IKLKVATLEGISDSI 133
M + P+KEI+GG WY+E D EFI +++ C++++ TL+ I + +
Sbjct: 93 MLYDLTPAKEITGGPWYTEYEFDHEFIAELRNFILMCVRRMNGGLGVGNGVTLKQIYEKM 152
Query: 134 KRSGAFKVDLTKQQIEEIVRALVLDNQIME--VKSNGSGEF 172
++ +V L+ +++++V+ L D I + V +G F
Sbjct: 153 VQANVSRVQLSLDEVQQLVQTLAFDYMIEQRGVTEDGEALF 193
>gi|302697035|ref|XP_003038196.1| hypothetical protein SCHCODRAFT_46068 [Schizophyllum commune H4-8]
gi|300111893|gb|EFJ03294.1| hypothetical protein SCHCODRAFT_46068 [Schizophyllum commune H4-8]
Length = 483
Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 51/183 (27%), Positives = 85/183 (46%), Gaps = 33/183 (18%)
Query: 16 LTDHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVVNIHSK 75
LT E L+ I++ ++ GIWT+ +K + NL ++ K +K L K LIK V ++
Sbjct: 79 LTAEEGLVLSHIKASKNEGIWTKHLK--AKTNLAQALIDKCLKVLTQKKLIKRVQSVQHP 136
Query: 76 GKKHLMAVEFEPSKEISGGAWYSEGSLDTEFIKVVKSQCLKQIIKL-------------- 121
+K M EPS ++GG WY++ LD FI + CLK + +
Sbjct: 137 TRKIYMLEGVEPSVALTGGPWYTDNELDVAFINTLIRACLKIVRDMSSPRQSADKQGALF 196
Query: 122 ------KVATLEGISDSIKRSGAFKVDLTKQQIEEIVRALVLDNQIMEVKSNGSGEFTNI 175
+ T + I +++R+ DL+++ +E ++ L+LD GE I
Sbjct: 197 PIGYQPEYPTAQKIRSALQRAHLTDTDLSEEHVESLLNVLILD-----------GEIERI 245
Query: 176 PVG 178
PVG
Sbjct: 246 PVG 248
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 15/29 (51%), Positives = 18/29 (62%)
Query: 203 PCGVCPQINICKPDGVISPKTCVYYTKWL 231
PC +CP CK G ++P CVYYT WL
Sbjct: 441 PCSICPSFQFCKEGGPVNPTECVYYTDWL 469
>gi|68071909|ref|XP_677868.1| RNA polymerase subunit [Plasmodium berghei strain ANKA]
gi|56498146|emb|CAH99452.1| RNA polymerase subunit, putative [Plasmodium berghei]
Length = 280
Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 53/219 (24%), Positives = 103/219 (47%), Gaps = 19/219 (8%)
Query: 16 LTDHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVVNIHSK 75
L+D + LI+ + + Q GIWT D++++ ++ + V K +K L LIK+V NIH K
Sbjct: 76 LSDIDFLIFTKVENSQTNGIWTADLRKQTKLLIHQ--VQKGLKLLCECKLIKQVNNIHVK 133
Query: 76 GKKHLMAVEFEPSKEISGGAWYSEGSLDTEFIKVVKSQCLKQIIKLKVATLEGISDSIKR 135
+K + + E S+++ GG++Y +G + + + ++ + + + + + IK+
Sbjct: 134 NRKMYILYDIEASEKVIGGSFYKDGEFNKKVVDYIRENICFYLYNNNNSNVTSVINYIKK 193
Query: 136 SGAFKVDLTKQQIEEIVRALVLDNQIMEVKSNGSGEFTNIPVGKVCYKNVSKGGGGGEPK 195
+ I +++ L+ +++I K+N + E + Y N K
Sbjct: 194 LNNSVGYFSDNDIYRVIKTLLFEDRIKIYKNNDNEEL-------IYYYN--------NEK 238
Query: 196 TGSLASIPCGVCPQINICKPD--GVISPKTCVYYTKWLD 232
L PC C N C D I+PK+C+Y +L+
Sbjct: 239 KKILNQFPCFSCDIFNKCNFDTKTTINPKSCLYLNVYLN 277
>gi|66475946|ref|XP_627789.1| RNA polymerase III C34 subunit; rpc34p ortholog [Cryptosporidium
parvum Iowa II]
gi|32399034|emb|CAD98274.1| DNA-directed RNA polymerases iii 39 Kd polypeptide, possible
[Cryptosporidium parvum]
gi|46229200|gb|EAK90049.1| RNA polymerase III C34 subunit; rpc34p ortholog [Cryptosporidium
parvum Iowa II]
gi|323508939|dbj|BAJ77362.1| cgd6_4580 [Cryptosporidium parvum]
gi|323510447|dbj|BAJ78117.1| cgd6_4580 [Cryptosporidium parvum]
Length = 319
Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 58/230 (25%), Positives = 108/230 (46%), Gaps = 24/230 (10%)
Query: 14 DSLTDHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNK-SLIKEVVNI 72
+ L++ E L++ I + GIWT D+++ L ++V +++K L N +LI+ V +I
Sbjct: 93 NKLSNEEYLVFCSIEDAGNQGIWTADIRK--NTGLQTHVVQRAVKVLCNDWNLIRPVKSI 150
Query: 73 HSKGKKHLMAVEFEPSKEISGGAWYSEGSLDTEFIKVVKSQCLKQIIKLKVATLEGISDS 132
H K +K + EPSKE+SGG +Y G D F+ +K + + I + TL+ I +
Sbjct: 151 HVKNRKVYILASLEPSKELSGGTFYENGEFDMAFVDSIKEKIISFIDSKRKCTLQEILEF 210
Query: 133 IKR-----SGAFKVDLTKQQIEEIVRALVLDNQIMEVKSNGSGEFTNIPVGKVCYKNVSK 187
I S + + +++ ++ ++ L+++ +I+ VK S N +C K
Sbjct: 211 INYDMNMDSSSARKNISLSDLQSVINMLIVELKIICVKGGNSNSNENF---FMCLK---- 263
Query: 188 GGGGGEPKTGSLA----SIPCGVCPQINICKPDGVISPKTCVYYTKWLDF 233
P++ S+ +PC CP C C K++D+
Sbjct: 264 -----WPESLSVTPEAEDVPCLACPVFETCSWSFESQILPCPQLCKYIDY 308
>gi|255732355|ref|XP_002551101.1| hypothetical protein CTRG_05399 [Candida tropicalis MYA-3404]
gi|240131387|gb|EER30947.1| hypothetical protein CTRG_05399 [Candida tropicalis MYA-3404]
Length = 331
Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 55/187 (29%), Positives = 85/187 (45%), Gaps = 31/187 (16%)
Query: 15 SLTDHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVVNIHS 74
S+TD E +IY I + GIWT+ +K + NL +IV K +KSL+N IK + ++
Sbjct: 79 SMTDDEAMIYSYIENSGREGIWTKTIKA--KTNLHQHIVQKCLKSLENNRYIKSIKSVKH 136
Query: 75 KGKKHLMAVEFEPSKEISGGAWYSEGSLDTEFIKVVKSQCLKQIIKLKV----------- 123
+K M +PS +++GG W+++ LDTEFI + C + I+ +
Sbjct: 137 PTRKIYMLYNLQPSIDVTGGPWFTDSELDTEFIDTLVEVCWRFIVAKTIYIQNPESEDYD 196
Query: 124 ----------------ATLEGISDSIKRSGAFKVDLTKQQIEEIVRALVLDNQIMEVKSN 167
L+ I D I S V+L I + L+ D++I EV N
Sbjct: 197 SSSNPLQTSHHNHHRGVDLDQIVDYINSSNITSVELGINDIRSLCDVLIYDDRIEEVGGN 256
Query: 168 --GSGEF 172
SG F
Sbjct: 257 QENSGIF 263
>gi|146332185|gb|ABQ22598.1| DNA-directed RNA polymerase III subunit F-like protein [Callithrix
jacchus]
Length = 156
Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 49/161 (30%), Positives = 80/161 (49%), Gaps = 23/161 (14%)
Query: 91 ISGGAWYSEGSLDTEFIKVVKSQCLKQIIKLKVATLEGISDS-IKRSGAF---------- 139
++GGAWYS+ ++EF++V+ QC K + A E + I+R+ +F
Sbjct: 1 VTGGAWYSDQDFESEFVEVLNQQCFKFLQSKAEAARESKQNPMIQRNSSFASSHEVWKYI 60
Query: 140 ------KVDLTKQQIEEIVRALVLDNQI-MEVKSNGSGEFTNIPVGKVCYKNVSKGGGGG 192
KV+L+ + IE I+ L+ D ++ M + + G ++ Y+ V+
Sbjct: 61 CELGISKVELSMEDIETILNTLIYDGKVEMTIIAAKEGTVGSVDGHMKLYRAVNPII--- 117
Query: 193 EPKTGSLASIPCGVCPQINICKPDGVISPKTCVYYTKWLDF 233
P TG L PCG+CP + C G ISP C+Y T+WL+F
Sbjct: 118 -PPTG-LVRAPCGLCPVFDDCHEGGEISPSNCIYMTEWLEF 156
>gi|354543012|emb|CCE39730.1| hypothetical protein CPAR2_601500 [Candida parapsilosis]
Length = 319
Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 36/96 (37%), Positives = 61/96 (63%), Gaps = 2/96 (2%)
Query: 15 SLTDHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVVNIHS 74
S+TD ER+IY I + Q GIWT+ +K + NL +IV+K +K+L+++ IK + ++
Sbjct: 78 SMTDDERMIYSYIEASQREGIWTKTLKA--KTNLHQHIVSKCLKNLEHQRYIKSIKSVKH 135
Query: 75 KGKKHLMAVEFEPSKEISGGAWYSEGSLDTEFIKVV 110
+K M +PS +++GG W+++ LDTEFI +
Sbjct: 136 PTRKIYMLYHLQPSIDVTGGPWFTDSELDTEFIDTI 171
>gi|393244532|gb|EJD52044.1| hypothetical protein AURDEDRAFT_111548 [Auricularia delicata
TFB-10046 SS5]
Length = 464
Score = 77.4 bits (189), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 35/99 (35%), Positives = 63/99 (63%), Gaps = 2/99 (2%)
Query: 20 ERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVVNIHSKGKKH 79
E L+ I++ ++ GIWT+ +K + +L I+T+ +KSL+ K LIK + ++ ++
Sbjct: 82 ENLVLQAIQAAKNDGIWTKHLKS--KTDLHQTIITRCLKSLEQKGLIKPIKSVKYPTRRL 139
Query: 80 LMAVEFEPSKEISGGAWYSEGSLDTEFIKVVKSQCLKQI 118
+ EPS E++GG WY++ LDTEFI+++ + CL+ I
Sbjct: 140 YILSHLEPSVEVTGGPWYTDHELDTEFIRMLLAACLRFI 178
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 16/32 (50%), Positives = 20/32 (62%)
Query: 200 ASIPCGVCPQINICKPDGVISPKTCVYYTKWL 231
A PC CPQ C P G ++P+ C YYT+WL
Sbjct: 426 AQAPCAQCPQFEFCDPGGPVNPRGCEYYTQWL 457
>gi|67623655|ref|XP_668110.1| DNA-directed RNA polymerases iii 39 Kd polypeptide [Cryptosporidium
hominis TU502]
gi|54659309|gb|EAL37892.1| DNA-directed RNA polymerases iii 39 Kd polypeptide [Cryptosporidium
hominis]
Length = 319
Score = 77.0 bits (188), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 57/230 (24%), Positives = 108/230 (46%), Gaps = 24/230 (10%)
Query: 14 DSLTDHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNK-SLIKEVVNI 72
+ L++ E +++ I + GIWT D+++ L ++V +++K L N +LI+ V +I
Sbjct: 93 NKLSNEEYIVFCSIEDAGNQGIWTADIRK--NTGLQTHVVQRAVKLLCNDWNLIRPVKSI 150
Query: 73 HSKGKKHLMAVEFEPSKEISGGAWYSEGSLDTEFIKVVKSQCLKQIIKLKVATLEGISDS 132
H K +K + EPSKE+SGG +Y G D F+ +K + + I + TL+ I +
Sbjct: 151 HVKNRKVYILASLEPSKELSGGTFYENGEFDMAFVDSIKEKIISFIDSKRKCTLQEILEF 210
Query: 133 IKR-----SGAFKVDLTKQQIEEIVRALVLDNQIMEVKSNGSGEFTNIPVGKVCYKNVSK 187
I S + + +++ ++ ++ L+++ +I+ VK S N +C K
Sbjct: 211 INYDMNMDSSSARKNISLSDLQSVINMLIVELKIICVKGGNSNSNENF---FMCLK---- 263
Query: 188 GGGGGEPKTGSLA----SIPCGVCPQINICKPDGVISPKTCVYYTKWLDF 233
P++ S+ +PC CP C C K++D+
Sbjct: 264 -----WPESLSVTPEAEDVPCLACPVFETCSWSFESQILPCPQLCKYIDY 308
>gi|71033063|ref|XP_766173.1| RNA polymerase subunit [Theileria parva strain Muguga]
gi|68353130|gb|EAN33890.1| RNA polymerase subunit, putative [Theileria parva]
Length = 295
Score = 76.6 bits (187), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 51/220 (23%), Positives = 109/220 (49%), Gaps = 16/220 (7%)
Query: 16 LTDHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSL-QNKSLIKEVVNIHS 74
L D + I+ I + + GIWT D+++ L +++ N V + +K L ++ LI+ + +++
Sbjct: 87 LKDIDYKIFCTIETAGNKGIWTADIRKILGLHI--NQVQRGVKYLYESNRLIRPITDVNY 144
Query: 75 KGKKHLMAVEFEPSKEISGGAWYSEGSLDTEFIKVVKSQCLKQIIKLKVATLEGISDSIK 134
K +K + EPS +++GG++Y G + ++ ++ Q + + + ++ I+ +K
Sbjct: 145 KSRKLFILSTLEPSTQVTGGSFYDNGEFNELLVEKLQEQICSFLSNNQGSNIQDITTFLK 204
Query: 135 RSGAFKVDLTKQQIEEIVRALVLDNQIMEVKSNGSGEFTNIPVGKVCYKNVSKGGGGGEP 194
+ + +L + + I++ L+L+N+I + +F I G K +
Sbjct: 205 ETNIIRGELLETDVNRIIKLLLLENKIFNSPLE-NNQFIYIWCGDNNLKFIE-------- 255
Query: 195 KTGSLASIPCGVCPQINICK-PDGVISPKTCVYYTKWLDF 233
++PC C + C D ++PK C Y T+WLD+
Sbjct: 256 ---DCFNVPCFGCNISDSCNFNDDHVNPKNCNYLTQWLDY 292
>gi|402590744|gb|EJW84674.1| RNA polymerase Rpc34 subunit family protein [Wuchereria bancrofti]
Length = 296
Score = 76.6 bits (187), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 56/233 (24%), Positives = 99/233 (42%), Gaps = 39/233 (16%)
Query: 17 TDHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVVNIHSKG 76
T E+LIY +I GIW RD++ R L + K +K L+ + L+K + + +
Sbjct: 83 THEEQLIYSLIEESGKKGIWIRDIRD--RTGLSQTQMRKVLKVLEQRKLVKSIKAVGTT- 139
Query: 77 KKHLMAVEFEPSKEISGGAWYSEGSLDTEFIKVVKSQCLKQII----------------- 119
KK M + + ++GG +YS+ LD++F++ + C+ +
Sbjct: 140 KKCYMLYDMVADESLTGGTFYSDQQLDSQFVETLAHICVAMLQSKRKLSEDNHKNDPSAA 199
Query: 120 -KLKVATLEGISDSIKRSGAFKVDLTKQQIEEIVRALVLDNQIMEVKSNGSGEFTNIPVG 178
+ ++ I+ G +V L+ IE I+ +LD +E +++G
Sbjct: 200 REFAFVRSTEVAQFIREKGVCRVQLSVVDIESILSVALLDG-FIERRADGM--------- 249
Query: 179 KVCYKNVSKGGGGGEPKTGSLASIPCGVCPQINICKPDGVISPKTCVYYTKWL 231
Y+ ++ P PC CP CKP +ISP+ C Y+ WL
Sbjct: 250 ---YRALTAKMTRCAPSL-----CPCIHCPIQADCKPGHIISPQNCEYFVNWL 294
>gi|389746352|gb|EIM87532.1| hypothetical protein STEHIDRAFT_168250 [Stereum hirsutum FP-91666
SS1]
Length = 544
Score = 76.6 bits (187), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 49/181 (27%), Positives = 89/181 (49%), Gaps = 28/181 (15%)
Query: 16 LTDHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVVN-IHS 74
++ E ++ I++ ++GIWT+ +K + L ++ + +KSL K +IK +
Sbjct: 81 MSGEEDMVLSHIQAAGNLGIWTKHLK--AKTELHQTVIDRCLKSLTQKQIIKPFTGAVKY 138
Query: 75 KGKKHLMAVEFEPSKEISGGAWYSEGSLDTEFIKVVKSQCLKQI-------------IKL 121
+K M EPS E++GG WY++G LDTEFIK++ S CL+ I +
Sbjct: 139 PTRKLYMMAHLEPSVELTGGPWYTDGELDTEFIKLLCSACLRFIRDRSFPKQKRSEDMPE 198
Query: 122 KVATLEGISDS------------IKRSGAFKVDLTKQQIEEIVRALVLDNQIMEVKSNGS 169
L IS+S +++S + LT+ +E ++ LVLD + ++ + G+
Sbjct: 199 SSQPLFSISNSPSYPSSKHVLSFLEKSRITETQLTEAHVESLLNVLVLDGDVEKLPAFGA 258
Query: 170 G 170
Sbjct: 259 A 259
Score = 43.5 bits (101), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 17/29 (58%)
Query: 203 PCGVCPQINICKPDGVISPKTCVYYTKWL 231
PCG CP CK G +P+ C YY +WL
Sbjct: 508 PCGRCPVFEFCKDGGPTNPRDCAYYGEWL 536
>gi|448533304|ref|XP_003870604.1| Rpc34 protein [Candida orthopsilosis Co 90-125]
gi|380354959|emb|CCG24475.1| Rpc34 protein [Candida orthopsilosis]
Length = 322
Score = 76.6 bits (187), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 35/96 (36%), Positives = 61/96 (63%), Gaps = 2/96 (2%)
Query: 15 SLTDHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVVNIHS 74
S++D ER+IY I + Q GIWT+ +K + NL +IV+K +K+L+++ IK + ++
Sbjct: 78 SMSDDERMIYSYIEASQREGIWTKTLKA--KTNLHQHIVSKCLKNLEHQRYIKSIKSVKH 135
Query: 75 KGKKHLMAVEFEPSKEISGGAWYSEGSLDTEFIKVV 110
+K M +PS +++GG W+++ LDTEFI +
Sbjct: 136 PTRKIYMLYHLQPSIDVTGGPWFTDSELDTEFIDTI 171
>gi|156102106|ref|XP_001616746.1| DNA-directed RNA polymerases III 39 kDa polypeptide [Plasmodium
vivax Sal-1]
gi|148805620|gb|EDL47019.1| DNA-directed RNA polymerases III 39 kDa polypeptide, putative
[Plasmodium vivax]
Length = 303
Score = 76.6 bits (187), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 53/220 (24%), Positives = 105/220 (47%), Gaps = 19/220 (8%)
Query: 16 LTDHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVVNIHSK 75
L+D + LI+ + + Q+ GIWT D++++ ++ + V K +K L LIK+V NIH K
Sbjct: 91 LSDIDFLIFTKVENSQNNGIWTADLRKQTKLLIHQ--VQKGVKLLCECKLIKQVNNIHVK 148
Query: 76 GKKHLMAVEFEPSKEISGGAWYSEGSLDTEFIKVVKSQCLKQIIKLKVATLEGISDSIKR 135
+K + + E S+++ GG++Y++G + + + ++ + + + + + IK
Sbjct: 149 NRKMYILYDLEASEKVIGGSFYTDGEFNKKVVDYIRENICFYLYNNNNSNVLSVINYIKN 208
Query: 136 SGAFKVDLTKQQIEEIVRALVLDNQIMEVKSNGSGEFTNIPVGKVCYKNVSKGGGGGEPK 195
+ + I +++ L+ + +I ++ NG+ E + Y N K
Sbjct: 209 LNSSIGYFSDNDIYRVIKTLLYEERI-KIYKNGNDEEI------IYYYN--------NEK 253
Query: 196 TGSLASIPCGVCPQINICKPD--GVISPKTCVYYTKWLDF 233
++ PC C N C D I+PK CVY +L+
Sbjct: 254 KSYFSNFPCFSCDIFNKCNSDTKTAINPKNCVYLNFYLNL 293
>gi|170592535|ref|XP_001901020.1| RNA polymerase Rpc34 subunit family protein [Brugia malayi]
gi|158591087|gb|EDP29700.1| RNA polymerase Rpc34 subunit family protein [Brugia malayi]
Length = 325
Score = 76.3 bits (186), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 56/233 (24%), Positives = 99/233 (42%), Gaps = 39/233 (16%)
Query: 17 TDHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVVNIHSKG 76
T E+LIY +I GIW RD++ R L + K +K L+ + L+K + + +
Sbjct: 112 THEEQLIYSLIEESGRKGIWIRDIRD--RTGLSQTQMRKVLKVLEQRKLVKSIKAVGTT- 168
Query: 77 KKHLMAVEFEPSKEISGGAWYSEGSLDTEFIKVVKSQCLKQII----------------- 119
KK M + + ++GG +YS+ LD++F++ + C+ +
Sbjct: 169 KKCYMLYDMVADESLTGGTFYSDQQLDSQFVETLAHICVAMLQSKRKLSEDNHKNDPSAA 228
Query: 120 -KLKVATLEGISDSIKRSGAFKVDLTKQQIEEIVRALVLDNQIMEVKSNGSGEFTNIPVG 178
+ ++ I+ G +V L+ IE I+ +LD +E +++G
Sbjct: 229 REFAFVRSTEVAQFIREKGVCRVQLSVVDIESILSVALLDG-FIERRADGM--------- 278
Query: 179 KVCYKNVSKGGGGGEPKTGSLASIPCGVCPQINICKPDGVISPKTCVYYTKWL 231
Y+ ++ P PC CP CKP +ISP+ C Y+ WL
Sbjct: 279 ---YRALTAKMTRCAPSL-----CPCIHCPIQADCKPGHIISPQNCEYFVTWL 323
>gi|388582803|gb|EIM23107.1| hypothetical protein WALSEDRAFT_44075 [Wallemia sebi CBS 633.66]
Length = 528
Score = 76.3 bits (186), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 47/163 (28%), Positives = 82/163 (50%), Gaps = 26/163 (15%)
Query: 20 ERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVVNIHSKGKKH 79
E+L Y I + + GIWT+ +K ++ NL +V + +KSL+++ IK V ++ +K
Sbjct: 87 EQLAYQYIDAAGNEGIWTKTLK--MKTNLHQTVVNRVLKSLESRGSIKAVKSVKHPTRKI 144
Query: 80 LMAVEFEPSKEISGGAWYSEGSLDTEFIKVVKSQCLKQIIKLKVATLEGISDSIK----- 134
M PS E++GG WY++ LDTEF+ +KS L + + T I D+IK
Sbjct: 145 YMLASISPSVELTGGPWYTDNELDTEFVGQLKSAVLSYV---RGCTYPKIKDNIKPIYAI 201
Query: 135 ----------------RSGAFKVDLTKQQIEEIVRALVLDNQI 161
+SG +V+L + I+ ++ L+ D ++
Sbjct: 202 SKVDYPNVRKVHKWLSKSGLTQVELGLEHIQSLLEVLMFDGEV 244
>gi|221060302|ref|XP_002260796.1| RNA polymerase subunit [Plasmodium knowlesi strain H]
gi|193810870|emb|CAQ42768.1| RNA polymerase subunit, putative [Plasmodium knowlesi strain H]
Length = 301
Score = 76.3 bits (186), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 52/220 (23%), Positives = 105/220 (47%), Gaps = 19/220 (8%)
Query: 16 LTDHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVVNIHSK 75
L+D + LI+ + + Q+ GIWT D++++ ++ + V K +K L LIK+V NIH K
Sbjct: 73 LSDIDFLIFTKVENSQNNGIWTADLRKQTKLLIHQ--VQKGVKLLCECKLIKQVNNIHVK 130
Query: 76 GKKHLMAVEFEPSKEISGGAWYSEGSLDTEFIKVVKSQCLKQIIKLKVATLEGISDSIKR 135
+K + + E S+++ GG++Y++G + + + ++ + + + + + IK
Sbjct: 131 NRKMYILYDLEASEKVIGGSFYTDGEFNKKVVDYIRENICFYLYNNNNSNVLSVINYIKN 190
Query: 136 SGAFKVDLTKQQIEEIVRALVLDNQIMEVKSNGSGEFTNIPVGKVCYKNVSKGGGGGEPK 195
+ + I +++ L+ + +I ++ NG+ E ++ Y K
Sbjct: 191 LNSSIGYFSDNDIYRVIKTLLYEERI-KIYKNGNDE-------EIIY-------YYNNEK 235
Query: 196 TGSLASIPCGVCPQINICKPD--GVISPKTCVYYTKWLDF 233
++ PC C N C D I+PK CVY +L+
Sbjct: 236 KNYFSNFPCFSCDIFNKCNSDTKTAINPKNCVYLNFYLNL 275
>gi|389585754|dbj|GAB68484.1| DNA-directed RNA polymerases III 39 kDa polypeptide, partial
[Plasmodium cynomolgi strain B]
Length = 286
Score = 76.3 bits (186), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 52/220 (23%), Positives = 105/220 (47%), Gaps = 19/220 (8%)
Query: 16 LTDHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVVNIHSK 75
L+D + LI+ + + Q+ GIWT D++++ ++ + V K +K L LIK+V NIH K
Sbjct: 83 LSDIDFLIFTKVENSQNNGIWTADLRKQTKLLIHQ--VQKGVKLLCECKLIKQVNNIHVK 140
Query: 76 GKKHLMAVEFEPSKEISGGAWYSEGSLDTEFIKVVKSQCLKQIIKLKVATLEGISDSIKR 135
+K + + E S+++ GG++Y++G + + + ++ + + + + + IK
Sbjct: 141 NRKMYILYDLEASEKVIGGSFYTDGEFNKKVVDYIRENICFYLYNNNNSNVLSVINYIKN 200
Query: 136 SGAFKVDLTKQQIEEIVRALVLDNQIMEVKSNGSGEFTNIPVGKVCYKNVSKGGGGGEPK 195
+ + I +++ L+ + +I ++ NG+ E ++ Y K
Sbjct: 201 LNSSIGYFSDNDIYRVIKTLLYEERI-KIYKNGNDE-------EIIY-------YYNNEK 245
Query: 196 TGSLASIPCGVCPQINICKPD--GVISPKTCVYYTKWLDF 233
++ PC C N C D I+PK CVY +L+
Sbjct: 246 KNYFSNFPCFSCDIFNKCNSDTKTAINPKNCVYLNFYLNL 285
>gi|390605124|gb|EIN14515.1| RNA polymerase Rpc34 [Punctularia strigosozonata HHB-11173 SS5]
Length = 242
Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 36/103 (34%), Positives = 61/103 (59%), Gaps = 2/103 (1%)
Query: 16 LTDHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVVNIHSK 75
++ E ++ I++ + GIWT+ +K + L ++ + +KSL K LIK + ++
Sbjct: 84 MSGEESMVLSHIQAAGNEGIWTKHIK--AKTELHQTVIDRCLKSLTQKQLIKSIKSVKHP 141
Query: 76 GKKHLMAVEFEPSKEISGGAWYSEGSLDTEFIKVVKSQCLKQI 118
+K M EPS E++GG WY++ LDTEFIK++ S CL+ I
Sbjct: 142 TRKLYMLYHLEPSVELTGGPWYTDNELDTEFIKLLSSACLRFI 184
>gi|164660610|ref|XP_001731428.1| hypothetical protein MGL_1611 [Malassezia globosa CBS 7966]
gi|159105328|gb|EDP44214.1| hypothetical protein MGL_1611 [Malassezia globosa CBS 7966]
Length = 507
Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 38/104 (36%), Positives = 63/104 (60%), Gaps = 2/104 (1%)
Query: 15 SLTDHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVVNIHS 74
S+ +E +IY+ I+ ++ GIWT+ +K R NL I+T+ +++L+ K L+K V ++
Sbjct: 85 SMDSNELIIYNHIKDARNEGIWTKLIK--ARTNLHQTIMTRCLRTLEQKQLVKSVKSVKF 142
Query: 75 KGKKHLMAVEFEPSKEISGGAWYSEGSLDTEFIKVVKSQCLKQI 118
+K M + PS E+SGG WY++ LDT FI + CL+ I
Sbjct: 143 PTRKIYMLYDLTPSIELSGGPWYTDNELDTGFIHELSMACLRFI 186
>gi|321451182|gb|EFX62917.1| hypothetical protein DAPPUDRAFT_130662 [Daphnia pulex]
Length = 298
Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 53/216 (24%), Positives = 103/216 (47%), Gaps = 25/216 (11%)
Query: 19 HERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVVNIHSKGKK 78
E+++ +I + GIW RD++ + +N + K +K+L+ K LIK V ++ + KK
Sbjct: 106 EEKIVMRIIEEAGNKGIWNRDIRTKSSLN--QTTLNKILKALEGKKLIKSVSSVSAAKKK 163
Query: 79 HLMAVEFEPSKEISGGAWYSEGSLDTEFIKVVKSQCLKQIIKLKVATLEGISDS--IKRS 136
M +P + ++GG+WYS+ ++E + ++ QC + + + A + D + R+
Sbjct: 164 VYMLFNLQPDRSVTGGSWYSDNEFESELVDILNQQCYRILQQKSEAAKQKSMDGPFVVRN 223
Query: 137 GAFKVDLTKQQIEEIVRALVLDNQIMEVKSNGSGEFTNIPVGKVCYKNVSKGGGGGEPKT 196
+F L+ ++I +I+ + + VK N + E + + Y G E
Sbjct: 224 SSF---LSSKEICQIISDMKI------VKFNLTVEDIETILDTLIY------DGKIE--- 265
Query: 197 GSLASIPCGVCPQINICKPDGVISPKTCVYYTKWLD 232
++ + C C + + PK CVYY +WLD
Sbjct: 266 --MSPVLCWNCSN-PLRSLSSAVQPKNCVYYDQWLD 298
>gi|402471876|gb|EJW05385.1| hypothetical protein EDEG_00049 [Edhazardia aedis USNM 41457]
Length = 234
Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 43/163 (26%), Positives = 87/163 (53%), Gaps = 12/163 (7%)
Query: 12 PSDSLTDHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVVN 71
P+ S D ER+IY +I G+W RD+K ++ N+P N++ K ++ ++NK +IK + +
Sbjct: 59 PASSF-DEERIIYQLIAETNGKGLWLRDIK--MKSNIPQNLINKILQQMENKKIIKSIKS 115
Query: 72 IHSKGKKHLMAVEFEPSKEISGGAWYSEGSLDTEF--------IKVVKSQCLKQIIKLKV 123
+ + K +++ + + ++++GG W+++G +D EF IK + +I
Sbjct: 116 VKNNRKIYVLYSD-KVCEDVTGGVWFNDGEIDDEFFNCVVKLVIKYLNDNYANEIYYKNF 174
Query: 124 ATLEGISDSIKRSGAFKVDLTKQQIEEIVRALVLDNQIMEVKS 166
+ E I I+R V L +E +++ +V D I E+++
Sbjct: 175 PSAEEIHKHIERCKISSVQLNLSDVESLLKVMVYDEYIQELET 217
>gi|238883048|gb|EEQ46686.1| hypothetical protein CAWG_05049 [Candida albicans WO-1]
Length = 330
Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 53/201 (26%), Positives = 92/201 (45%), Gaps = 31/201 (15%)
Query: 15 SLTDHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVVNIHS 74
S++D E +IY I + GIWT+ +K + NL +IV K +K+L+N IK + ++
Sbjct: 80 SMSDDEAMIYSYIEASGREGIWTKTIKA--KTNLHQHIVQKCLKNLENNRYIKSIKSVKH 137
Query: 75 KGKKHLMAVEFEPSKEISGGAWYSEGSLDTEFIKVVKSQCLKQIIKLKV----------- 123
+K M +PS +++GG W+++ LDTEFI+ + C + I+ +
Sbjct: 138 PTRKIYMLYNLQPSIDVTGGPWFTDSELDTEFIETLLEVCWRFIVGKTMYIKDEEADNED 197
Query: 124 --------------ATLEGISDSIKRSGAFKVDLTKQQIEEIVRALVLDNQIMEVKSNGS 169
L+ + + I S V+L I + L+ DN+I EV N
Sbjct: 198 INPLQTTYHNHHPGVNLDQLVEFINNSNITSVELGINDIRSLCDVLIYDNRIEEVGGNQE 257
Query: 170 GEFTNIPVGKVCYKNVSKGGG 190
N + KV ++++ G
Sbjct: 258 ----NSGIFKVTWQSIIDKGN 274
>gi|392558473|gb|EIW51661.1| hypothetical protein TRAVEDRAFT_137014 [Trametes versicolor
FP-101664 SS1]
Length = 423
Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 48/172 (27%), Positives = 85/172 (49%), Gaps = 25/172 (14%)
Query: 16 LTDHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVVNIHSK 75
L E L+ D IR+ GIWT+ +K + L +V + +KSL + LIK V ++
Sbjct: 79 LDSEEGLVLDRIRTAGVEGIWTKHIK--AKTQLHQTVVDRCLKSLTKRQLIKTVPDVRHP 136
Query: 76 GKKHLMAVEFEPSKEISGGAWYSEGSLDTEFIKVVKSQCLKQI-------IKLKVAT--- 125
+K + +P+ E++GG WY++ LDTEFIK++ CLK + +K + T
Sbjct: 137 TRKTYILASLQPATELTGGPWYTDKELDTEFIKLLSDVCLKIVQDRSFPRVKERQETEHR 196
Query: 126 -------------LEGISDSIKRSGAFKVDLTKQQIEEIVRALVLDNQIMEV 164
+ + +++S + LT + +E ++ LVLD +I ++
Sbjct: 197 PLYPCSHTAYATSQQHVQTFLQKSRVTETALTVEHVEMLLDVLVLDGKIEKI 248
Score = 42.0 bits (97), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 17/29 (58%)
Query: 203 PCGVCPQINICKPDGVISPKTCVYYTKWL 231
PC CP+ + C G ++PK C YY WL
Sbjct: 385 PCLRCPKFDFCSEQGSVNPKECAYYDPWL 413
>gi|353238962|emb|CCA70891.1| related to RPC34-DNA-directed RNA polymerase III, 34 KD subunit
[Piriformospora indica DSM 11827]
Length = 468
Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 44/167 (26%), Positives = 80/167 (47%), Gaps = 22/167 (13%)
Query: 15 SLTDHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVVNIHS 74
S+ + + +I ++ G+WT+ ++R R +LP +VT+S+K L+ + LIK + ++
Sbjct: 81 SMDKDTQAVLALIEEAKNEGVWTKTLER--RTDLPQKVVTRSLKQLEKQGLIKPIKSVKY 138
Query: 75 KGKKHLMAVEFEPSKEISGGAWYSEGSLDTEFIKVVKSQ----------------CLKQI 118
+K M PS E++GG WY E D EF+ ++ Q C + +
Sbjct: 139 PTRKMYMLFHLTPSSEVTGGVWYHEQEFDQEFVNIMLEQIYGFIASKSLPKPTPRCARPL 198
Query: 119 IKLKVA----TLEGISDSIKRSGAFKVDLTKQQIEEIVRALVLDNQI 161
A +L I+D I+++ V L + +E ++R L D I
Sbjct: 199 YPRSEAHRYPSLTRIADWIRKNPISDVKLKPEDVEPLLRVLEFDGLI 245
Score = 46.6 bits (109), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 16/33 (48%), Positives = 20/33 (60%)
Query: 200 ASIPCGVCPQINICKPDGVISPKTCVYYTKWLD 232
A PC CPQ++ C G ++ CVYYT WLD
Sbjct: 409 ADSPCTGCPQVDFCSETGPVNASECVYYTAWLD 441
>gi|385303565|gb|EIF47629.1| rna polymerase iii subunit c34 [Dekkera bruxellensis AWRI1499]
Length = 321
Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 55/207 (26%), Positives = 93/207 (44%), Gaps = 42/207 (20%)
Query: 16 LTDHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVVNIHSK 75
+++ E ++Y I + GIWT+ +K ++ NL ++V + +KSL+++S IK V ++
Sbjct: 53 MSNDEAMVYSYIEAAGREGIWTKTLK--VKTNLHQHVVLRCLKSLESQSYIKAVKSVKHP 110
Query: 76 GKKHLMAVEFEPSKEISGGAWYSEGSLDTEFI--------KVVKSQCLKQIIKLK----- 122
+K M PS E++GG W+++ LDT+FI K V S+ K K
Sbjct: 111 QRKIYMLYHLTPSIEVTGGPWFTDSELDTDFIDSLLIIVWKFVASKTFPMCFKGKGTIVG 170
Query: 123 ------------------VATLEGISDSIKRSGAFKVDLTKQQIEEIVRALVLDNQIMEV 164
+ TL I I SG V+LT ++ + LV D ++
Sbjct: 171 GHKQLSYPASMLSGMGGQLPTLARIGQFIASSGVTTVELTLDNVKSLCDVLVYDEKL--- 227
Query: 165 KSNGSGEFTNIPVGKVCYKNVSKGGGG 191
E N K +++V + GGG
Sbjct: 228 ------EXVNAHCYKATWQSVLEAGGG 248
>gi|448117225|ref|XP_004203204.1| Piso0_000805 [Millerozyma farinosa CBS 7064]
gi|359384072|emb|CCE78776.1| Piso0_000805 [Millerozyma farinosa CBS 7064]
Length = 322
Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 62/254 (24%), Positives = 109/254 (42%), Gaps = 47/254 (18%)
Query: 15 SLTDHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVVNIHS 74
S+++ E +IY I + GIWT+ +K + NL +IV + +KSL+ + IK + ++
Sbjct: 77 SMSEDEAMIYSYIEASGREGIWTKTLKA--KTNLHQHIVVRCLKSLEGQRYIKSIKSVKH 134
Query: 75 KGKKHLMAVEFEPSKEISGGAWYSEGSLDTEFI--------KVVKSQCLKQIIKLK---- 122
+K M +PS E++GG W+++ LDTEFI + + S+ + +
Sbjct: 135 PTRKIYMLYNLQPSIEVTGGPWFTDSELDTEFIDSLLKVVWRFIASKSYPTVFQAPSPNV 194
Query: 123 -------------VATLEGISDSIKRSGAFKVDLTKQQIEEIVRALVLDNQIMEVKSNGS 169
A+L I D I + VDL + + LV D++I ++
Sbjct: 195 NIVQASFPTTHNGFASLSSIVDFIANANITTVDLAINDVRSLCEVLVYDDKIEPIEH--- 251
Query: 170 GEFTNIPVGKVCYKNVSKGGGGGE-----------PKTGSLASIPCGVCPQINICKPDGV 218
I KV + ++ + G G + PK SLA+ P + D
Sbjct: 252 ----MIDSYKVTWSSILEAGYGRDYENPSNEAFVSPKLKSLAA-PKHFSIFDSYSVIDSA 306
Query: 219 IS-PKTCVYYTKWL 231
++ K VY+ W+
Sbjct: 307 LADDKDLVYFDSWI 320
>gi|409046766|gb|EKM56245.1| hypothetical protein PHACADRAFT_117896 [Phanerochaete carnosa
HHB-10118-sp]
Length = 501
Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 48/177 (27%), Positives = 85/177 (48%), Gaps = 25/177 (14%)
Query: 16 LTDHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVV-NIHS 74
L+ E L+ I++ + GIWT+ +K ++ L ++ + +KSL K L+K + ++
Sbjct: 79 LSGEESLVLSHIQAAGNEGIWTKHIK--VKTELHQTVIDRCLKSLTQKKLVKCISGSVQH 136
Query: 75 KGKKHLMAVEFEPSKEISGGAWYSEGSLDTEFIKVVKSQCLKQI---------------- 118
+K M EPS E++GG WY++ LDTEFIK++ + CLK I
Sbjct: 137 PTRKIYMLFHLEPSTEMTGGPWYTDKELDTEFIKLLTAACLKFIRDRSFPRSKTGESSQR 196
Query: 119 ------IKLKVATLEGISDSIKRSGAFKVDLTKQQIEEIVRALVLDNQIMEVKSNGS 169
T + + +S + LT + +E ++ LVLD + +V + G+
Sbjct: 197 LLYPISAAPSYPTAAQVQGFLNKSRITETQLTVEHVETLLNVLVLDGDVEKVPALGA 253
Score = 45.4 bits (106), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 21/33 (63%)
Query: 199 LASIPCGVCPQINICKPDGVISPKTCVYYTKWL 231
+A PCG CP + CK G ++P+ C++Y WL
Sbjct: 461 IAQAPCGRCPVFDFCKVGGSVNPQECIHYADWL 493
>gi|169595432|ref|XP_001791140.1| hypothetical protein SNOG_00455 [Phaeosphaeria nodorum SN15]
gi|111070830|gb|EAT91950.1| hypothetical protein SNOG_00455 [Phaeosphaeria nodorum SN15]
Length = 364
Score = 74.7 bits (182), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 36/103 (34%), Positives = 61/103 (59%), Gaps = 2/103 (1%)
Query: 16 LTDHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVVNIHSK 75
LT ERL+Y I Q GIW++ ++ +R N+ ++TK +KSL++K L++ V+++
Sbjct: 100 LTPDERLLYHHIDQVQAEGIWSKALR--MRTNVTQQVLTKCLKSLESKDLVQSVMSVKFP 157
Query: 76 GKKHLMAVEFEPSKEISGGAWYSEGSLDTEFIKVVKSQCLKQI 118
+K + +PS++I+GG W SEG DT I + S + I
Sbjct: 158 NRKMYLLKHLKPSEDIAGGPWQSEGDFDTALIDAISSVIAQHI 200
Score = 44.7 bits (104), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 22/30 (73%)
Query: 203 PCGVCPQINICKPDGVISPKTCVYYTKWLD 232
PCG CP ++C +G IS +TCVY+ +WL+
Sbjct: 329 PCGNCPVFDLCGDEGEISARTCVYFGQWLE 358
>gi|448119652|ref|XP_004203785.1| Piso0_000805 [Millerozyma farinosa CBS 7064]
gi|359384653|emb|CCE78188.1| Piso0_000805 [Millerozyma farinosa CBS 7064]
Length = 322
Score = 74.7 bits (182), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 63/254 (24%), Positives = 108/254 (42%), Gaps = 47/254 (18%)
Query: 15 SLTDHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVVNIHS 74
S+++ E +IY I + GIWT+ +K + NL +IV + +KSL+ + IK + ++
Sbjct: 77 SMSEDEAMIYSYIEASGREGIWTKTLKA--KTNLHQHIVVRCLKSLEGQRYIKSIKSVKH 134
Query: 75 KGKKHLMAVEFEPSKEISGGAWYSEGSLDTEFI--------KVVKSQCLKQIIKLK---- 122
+K M +PS E++GG W+++ LDTEFI + + S+ + +
Sbjct: 135 PTRKIYMLYNLQPSIEVTGGPWFTDSELDTEFIDSLLKVVWRFIASKSYPTVFQAPSSNV 194
Query: 123 -------------VATLEGISDSIKRSGAFKVDLTKQQIEEIVRALVLDNQIMEVKSNGS 169
A+L I D I + VDL + + LV D +I V+
Sbjct: 195 NIVQASFPTTHNGFASLASIVDFIANANITTVDLAINDVRSLCEVLVYDEKIEPVEH--- 251
Query: 170 GEFTNIPVGKVCYKNVSKGGGGGE-----------PKTGSLASIPCGVCPQINICKPDGV 218
I KV + ++ + G G + PK SLA+ P + D
Sbjct: 252 ----MIDSYKVTWSSILEAGYGRDYENPSNEAFISPKLKSLAA-PKHFSIFDSYSVIDSA 306
Query: 219 IS-PKTCVYYTKWL 231
++ K VY+ W+
Sbjct: 307 LADDKDLVYFDSWI 320
>gi|195572836|ref|XP_002104401.1| GD18467 [Drosophila simulans]
gi|194200328|gb|EDX13904.1| GD18467 [Drosophila simulans]
Length = 280
Score = 74.7 bits (182), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 36/108 (33%), Positives = 63/108 (58%), Gaps = 3/108 (2%)
Query: 9 SNAPSDSLTDHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKE 68
S P D+ + E+++Y ++ + GIW RD++ + +N+ + K +K+L+ K LIK
Sbjct: 70 SALPKDA-DNEEKVVYGIVEEGGNKGIWIRDIRMKSNLNMIQ--LNKILKNLETKKLIKA 126
Query: 69 VVNIHSKGKKHLMAVEFEPSKEISGGAWYSEGSLDTEFIKVVKSQCLK 116
V ++++ KK M EP I+GGAWY + + EF+ V+ QCL+
Sbjct: 127 VKSVNASKKKVYMLYNLEPDLSITGGAWYQDQDFEVEFVDVLNQQCLR 174
>gi|395329460|gb|EJF61847.1| hypothetical protein DICSQDRAFT_105558 [Dichomitus squalens
LYAD-421 SS1]
Length = 517
Score = 74.7 bits (182), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 49/183 (26%), Positives = 85/183 (46%), Gaps = 30/183 (16%)
Query: 16 LTDHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEV--VNIH 73
++ E +I I++ + GIWT+ +K + L ++ + +KSL K LIK V V +
Sbjct: 81 MSGEEGMILSYIQASGNEGIWTKHLK--AKTELHQTVIDRCLKSLVQKQLIKAVKSVQVG 138
Query: 74 SKGKKHLMAVEFEPSKEISGGAWYSEGSLDTEFIKVVKSQCLKQIIKLKVATLEGISDS- 132
+K M EPS E++GG WY++ LDTEFIK++ S CL+ I +G S
Sbjct: 139 YPTRKIYMLYHLEPSVEMTGGPWYTDNELDTEFIKLLCSACLRFIRDRSTPKPKGADPSS 198
Query: 133 -------------------------IKRSGAFKVDLTKQQIEEIVRALVLDNQIMEVKSN 167
+ +S + L + +E+++ L+LD +I + +
Sbjct: 199 SSANQPLHPISAAPAYPTAQQVLTFLSKSRITETQLATEHVEKLLNVLILDGEIERIPAF 258
Query: 168 GSG 170
G+
Sbjct: 259 GAA 261
Score = 42.4 bits (98), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 18/33 (54%)
Query: 199 LASIPCGVCPQINICKPDGVISPKTCVYYTKWL 231
LA PC CP CK G ++P+ C YY WL
Sbjct: 477 LAQTPCVRCPVFEFCKDGGPVNPRECEYYGNWL 509
>gi|336372678|gb|EGO01017.1| hypothetical protein SERLA73DRAFT_167202 [Serpula lacrymans var.
lacrymans S7.3]
Length = 481
Score = 74.3 bits (181), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 47/178 (26%), Positives = 85/178 (47%), Gaps = 25/178 (14%)
Query: 16 LTDHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVVNIHSK 75
+T E ++ I+ + GIWT+ +K + L ++ + +KSL K L+K + +
Sbjct: 79 MTGEEAMVLSHIQVSANEGIWTKHLK--AKTELHQTVIDRCLKSLVQKQLVKSIKAVRHP 136
Query: 76 GKKHLMAVEFEPSKEISGGAWYSEGSLDTEFIKVVKSQCLKQII--------KLKVATLE 127
+K M EPS E++GG WY++ LDTEFIK++ + CL I K + A +
Sbjct: 137 TRKIYMLAHLEPSVELTGGPWYTDNELDTEFIKLLSTACLHYIRDRSFPKSKKDRSAQDQ 196
Query: 128 ---------------GISDSIKRSGAFKVDLTKQQIEEIVRALVLDNQIMEVKSNGSG 170
I + +S + L + +E ++ LVLD ++ ++ + G+G
Sbjct: 197 PLYAIGAAPAYPNALQIQHFLSKSKITETQLNVEHVEMLLNVLVLDGEVEKIPAFGAG 254
Score = 45.1 bits (105), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 18/29 (62%)
Query: 203 PCGVCPQINICKPDGVISPKTCVYYTKWL 231
PCG CP + CK G +P+ C YY +WL
Sbjct: 445 PCGSCPVFDFCKEKGPTNPQECTYYEEWL 473
>gi|149236305|ref|XP_001524030.1| hypothetical protein LELG_04843 [Lodderomyces elongisporus NRRL
YB-4239]
gi|146452406|gb|EDK46662.1| hypothetical protein LELG_04843 [Lodderomyces elongisporus NRRL
YB-4239]
Length = 326
Score = 73.9 bits (180), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 48/180 (26%), Positives = 88/180 (48%), Gaps = 25/180 (13%)
Query: 15 SLTDHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVVNIHS 74
++T E +IY I + GIWT+ +K + NL +IV K +K+L+N+ IK + ++
Sbjct: 78 NMTTDEAMIYAHIEALGREGIWTKTLKS--KTNLHQHIVAKCLKNLENQRYIKSIKSVKY 135
Query: 75 KGKKHLMAVEFEPSKEISGGAWYSEGSLDTEFIKVVKSQCLKQIIKLKV----------- 123
+K M +PS E++GG W+++ LDTEFI V S + + + K
Sbjct: 136 PTRKIYMLYNLQPSLEVTGGPWFTDSELDTEFIDTV-SHIIWRFVVAKTFPKADMYDTNP 194
Query: 124 -----------ATLEGISDSIKRSGAFKVDLTKQQIEEIVRALVLDNQIMEVKSNGSGEF 172
A ++ I + + S +V+L ++ + LV D++I ++ ++ GE
Sbjct: 195 LQCNYTSSSPGANMDQIMEFLNTSNVSQVELELNDVQSLCNLLVYDDKIEQIGNDDKGEL 254
>gi|344232616|gb|EGV64489.1| RNA polymerase Rpc34 [Candida tenuis ATCC 10573]
Length = 321
Score = 73.9 bits (180), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 55/220 (25%), Positives = 100/220 (45%), Gaps = 34/220 (15%)
Query: 15 SLTDHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVVNIHS 74
S+++ E +IY I + GIWT+ +K + NL +IV + +K+L+N+ IK + ++
Sbjct: 82 SMSEDEAMIYSYIEASGREGIWTKTIKA--KTNLHQHIVVRCLKTLENQRYIKSIKSVKH 139
Query: 75 KGKKHLMAVEFEPSKEISGGAWYSEGSLDTEFI--------KVVKSQCLKQIIKLKVAT- 125
+K M +PS +++GG W+++ LD+EFI + V S+ + + A
Sbjct: 140 PTRKIYMLYNLQPSIDVTGGPWFTDSELDSEFIDNLLMVIWRFVASRTYPTVFQPPAANV 199
Query: 126 ----------------LEGISDSIKRSGAFKVDLTKQQIEEIVRALVLDNQIMEVKSNGS 169
L I D I +S +DL I + LV D++ +E+ N
Sbjct: 200 NILQASYPYNYTGYVDLNSIMDFIIKSEITNIDLAIHDIRALCDVLVFDDR-LEMVYNTV 258
Query: 170 GEFTNIPVGKVCYKNVSKGGGGGEPKTGSLASIPCGVCPQ 209
++ KV ++++ G G + K +I V Q
Sbjct: 259 DQY------KVTWQSILDAGYGIQYKEHMTPAIESVVNKQ 292
>gi|392590466|gb|EIW79795.1| hypothetical protein CONPUDRAFT_144945 [Coniophora puteana
RWD-64-598 SS2]
Length = 562
Score = 73.9 bits (180), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 34/103 (33%), Positives = 59/103 (57%), Gaps = 2/103 (1%)
Query: 16 LTDHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVVNIHSK 75
++ E ++ I++ + GIWT+ +K + L ++ + +KSL K L+K + +
Sbjct: 79 MSGEEAMVLGHIKAAANEGIWTKHLK--AKTELHQTVIDRCLKSLVQKQLVKSIKAVRFP 136
Query: 76 GKKHLMAVEFEPSKEISGGAWYSEGSLDTEFIKVVKSQCLKQI 118
+K M EPS E++GG WY++ LDTEFIK++ + CL I
Sbjct: 137 TRKIYMLAHLEPSVELTGGPWYTDNELDTEFIKLLSAACLHYI 179
Score = 42.0 bits (97), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 12/29 (41%), Positives = 16/29 (55%)
Query: 203 PCGVCPQINICKPDGVISPKTCVYYTKWL 231
PCG CP + C G +P C+YY +W
Sbjct: 512 PCGACPVFDFCHEKGPTNPVECIYYDEWF 540
>gi|443894276|dbj|GAC71625.1| RNA polymerase III, subunit C34 [Pseudozyma antarctica T-34]
Length = 516
Score = 73.9 bits (180), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 49/181 (27%), Positives = 84/181 (46%), Gaps = 24/181 (13%)
Query: 16 LTDHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVVNIHSK 75
L + E ++Y I+ ++ GIWT+ +K R L I+ + +KSL+ K L+K V ++
Sbjct: 89 LDETENMVYQHIKDSRNEGIWTKQLK--ARSGLHQTIINRCLKSLEQKQLVKAVKSVKYP 146
Query: 76 GKKHLMAVEFEPSKEISGGAWYSEGSLDTEFIKVVKSQCLKQI----------------- 118
+K M PS E+SGG WY++ LDT FI + CL I
Sbjct: 147 TRKIYMLYGLTPSIELSGGPWYTDNELDTGFINELSMACLNFIRSKSFPKNGQSRALFPT 206
Query: 119 -IKLKVATLEGISDSIKRSGAFKVDLTKQQIEEIVRALVLDNQIMEVK----SNGSGEFT 173
++ + + ++ SG + +L + + ++ LV D QI ++ + G G T
Sbjct: 207 THTSQLPSANTVHTYLRSSGLTETELELEHVVSLLDILVYDEQIEKIPVLPFAFGGGART 266
Query: 174 N 174
N
Sbjct: 267 N 267
>gi|241956760|ref|XP_002421100.1| DNA-directed RNA polymerase III subunit, putative [Candida
dubliniensis CD36]
gi|223644443|emb|CAX41258.1| DNA-directed RNA polymerase III subunit, putative [Candida
dubliniensis CD36]
Length = 330
Score = 73.6 bits (179), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 36/105 (34%), Positives = 62/105 (59%), Gaps = 2/105 (1%)
Query: 15 SLTDHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVVNIHS 74
S++D E +IY I + GIWT+ +K + NL +IV K +K+L+N IK + ++
Sbjct: 80 SMSDDEAMIYSYIEASGREGIWTKTIKA--KTNLHQHIVQKCLKNLENNRYIKSIKSVKH 137
Query: 75 KGKKHLMAVEFEPSKEISGGAWYSEGSLDTEFIKVVKSQCLKQII 119
+K M +PS +++GG W+++ LDTEFI+ + C + I+
Sbjct: 138 PTRKIYMLYNLQPSIDVTGGPWFTDSELDTEFIETLLEVCWRFIV 182
>gi|68473450|ref|XP_719283.1| hypothetical protein CaO19.13051 [Candida albicans SC5314]
gi|68473689|ref|XP_719169.1| hypothetical protein CaO19.5608 [Candida albicans SC5314]
gi|46440974|gb|EAL00275.1| hypothetical protein CaO19.5608 [Candida albicans SC5314]
gi|46441094|gb|EAL00394.1| hypothetical protein CaO19.13051 [Candida albicans SC5314]
Length = 330
Score = 73.6 bits (179), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 36/105 (34%), Positives = 62/105 (59%), Gaps = 2/105 (1%)
Query: 15 SLTDHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVVNIHS 74
S++D E +IY I + GIWT+ +K + NL +IV K +K+L+N IK + ++
Sbjct: 80 SMSDDEAMIYSYIEASGREGIWTKTIKA--KTNLHQHIVQKCLKNLENNRYIKSIKSVKH 137
Query: 75 KGKKHLMAVEFEPSKEISGGAWYSEGSLDTEFIKVVKSQCLKQII 119
+K M +PS +++GG W+++ LDTEFI+ + C + I+
Sbjct: 138 PTRKIYMLYNLQPSIDVTGGPWFTDSELDTEFIETLLEVCWRFIV 182
>gi|190345971|gb|EDK37952.2| hypothetical protein PGUG_02050 [Meyerozyma guilliermondii ATCC
6260]
Length = 306
Score = 73.6 bits (179), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 35/93 (37%), Positives = 57/93 (61%), Gaps = 2/93 (2%)
Query: 15 SLTDHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVVNIHS 74
S++D E +IY I + GIWT+ +K + NL +IV + +KSL+N+ IK + ++
Sbjct: 78 SMSDDEAMIYSYIEASGREGIWTKTIKA--KTNLHQHIVARCLKSLENQRYIKSIKSVKH 135
Query: 75 KGKKHLMAVEFEPSKEISGGAWYSEGSLDTEFI 107
+K M +PS E++GG W+++ LDTEFI
Sbjct: 136 PTRKIYMLYNLQPSIEVTGGPWFTDSELDTEFI 168
>gi|146420852|ref|XP_001486379.1| hypothetical protein PGUG_02050 [Meyerozyma guilliermondii ATCC
6260]
Length = 306
Score = 73.6 bits (179), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 35/93 (37%), Positives = 57/93 (61%), Gaps = 2/93 (2%)
Query: 15 SLTDHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVVNIHS 74
S++D E +IY I + GIWT+ +K + NL +IV + +KSL+N+ IK + ++
Sbjct: 78 SMSDDEAMIYSYIEASGREGIWTKTIKA--KTNLHQHIVARCLKSLENQRYIKSIKSVKH 135
Query: 75 KGKKHLMAVEFEPSKEISGGAWYSEGSLDTEFI 107
+K M +PS E++GG W+++ LDTEFI
Sbjct: 136 PTRKIYMLYNLQPSIEVTGGPWFTDSELDTEFI 168
>gi|344300161|gb|EGW30501.1| 34-kDa subunit of RNA polymerase III (C) [Spathaspora passalidarum
NRRL Y-27907]
Length = 317
Score = 73.2 bits (178), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 35/92 (38%), Positives = 55/92 (59%), Gaps = 2/92 (2%)
Query: 16 LTDHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVVNIHSK 75
+TD E ++Y I + GIWT+ +K R NL ++V K +KSL+ + IK + ++
Sbjct: 80 MTDEEAMVYSYIEASGREGIWTKTIKA--RTNLHQHVVAKCLKSLEGQRYIKSIKSVKHP 137
Query: 76 GKKHLMAVEFEPSKEISGGAWYSEGSLDTEFI 107
+K M +PS EI+GG W+++ LDTEFI
Sbjct: 138 TRKIYMLYNLQPSIEITGGPWFTDSELDTEFI 169
>gi|396459996|ref|XP_003834610.1| similar to DNA-directed RNA polymerase III subunit Rpc34
[Leptosphaeria maculans JN3]
gi|312211160|emb|CBX91245.1| similar to DNA-directed RNA polymerase III subunit Rpc34
[Leptosphaeria maculans JN3]
Length = 363
Score = 73.2 bits (178), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 35/95 (36%), Positives = 57/95 (60%), Gaps = 2/95 (2%)
Query: 16 LTDHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVVNIHSK 75
LT ERL+Y I Q GIW++ ++ R N+ ++TK +KSL++K L++ V+++
Sbjct: 97 LTADERLLYHHIDQVQAEGIWSKALRS--RTNVTQQVLTKCLKSLESKDLVQSVMSVKYP 154
Query: 76 GKKHLMAVEFEPSKEISGGAWYSEGSLDTEFIKVV 110
+K + +PS++I+GG W SEG DT I V
Sbjct: 155 NRKMYLLKHLQPSEDIAGGPWQSEGDFDTALIDTV 189
Score = 44.7 bits (104), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 22/30 (73%)
Query: 203 PCGVCPQINICKPDGVISPKTCVYYTKWLD 232
PCG CP ++C +G IS +TCVY+ +WL+
Sbjct: 328 PCGNCPVFDLCGNEGEISARTCVYFGQWLE 357
>gi|156054874|ref|XP_001593363.1| hypothetical protein SS1G_06285 [Sclerotinia sclerotiorum 1980]
gi|154704065|gb|EDO03804.1| hypothetical protein SS1G_06285 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 370
Score = 72.8 bits (177), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 38/111 (34%), Positives = 60/111 (54%), Gaps = 13/111 (11%)
Query: 125 TLEGISDSIKRSGAFKVDLTKQQIEEIVRALVLDNQIMEVKSNGSGEFTNIPVGKVCYKN 184
TL ++ I+ SGA + LT Q I++++ L+ DN+I +V + G VCY+
Sbjct: 269 TLNELTSFIENSGATAMTLTAQDIQQLLEILIFDNKIEKVLAGPEG---------VCYRA 319
Query: 185 VSKG---GGGGEPKTGSLASIPCGVCPQINICKPDGVISPKTCVYYTKWLD 232
V KG G P + +L +PCG CP ++C+ G + P TC Y+ WL+
Sbjct: 320 VRKGFREDQEGGP-SSALTDVPCGHCPVADLCEEGGPVGPSTCEYFQTWLN 369
Score = 70.5 bits (171), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 57/104 (54%), Gaps = 2/104 (1%)
Query: 15 SLTDHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVVNIHS 74
SL+ + ++Y +I + GIWT+ +K R NL D + ++K L+ K LI E+ ++ +
Sbjct: 94 SLSSEQEIVYALIDEAAEEGIWTKTIK--ARSNLHDAVFRTALKHLETKHLISEMKSVEN 151
Query: 75 KGKKHLMAVEFEPSKEISGGAWYSEGSLDTEFIKVVKSQCLKQI 118
+ +K + +PS +GGAWY++ LD EFI + I
Sbjct: 152 RNRKMYIKSSLQPSDRATGGAWYTDNELDEEFITQISHILFDHI 195
>gi|154320538|ref|XP_001559585.1| hypothetical protein BC1G_01741 [Botryotinia fuckeliana B05.10]
gi|347838876|emb|CCD53448.1| similar to DNA-directed RNA polymerase III subunit Rpc34
[Botryotinia fuckeliana]
Length = 370
Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 38/111 (34%), Positives = 60/111 (54%), Gaps = 13/111 (11%)
Query: 125 TLEGISDSIKRSGAFKVDLTKQQIEEIVRALVLDNQIMEVKSNGSGEFTNIPVGKVCYKN 184
TL ++ I+ SGA + LT Q I++++ L+ DN+I V + G VCY+
Sbjct: 269 TLNELTSFIENSGATAMTLTAQDIQQLLDILIFDNKIERVLAGPEG---------VCYRA 319
Query: 185 VSKG---GGGGEPKTGSLASIPCGVCPQINICKPDGVISPKTCVYYTKWLD 232
V KG G P + +L +PCG CP +++C+ G + P TC Y+ WL+
Sbjct: 320 VRKGFREEQEGGPFS-ALTDVPCGHCPVVDLCEEGGPVGPSTCEYFQTWLN 369
Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 56/104 (53%), Gaps = 2/104 (1%)
Query: 15 SLTDHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVVNIHS 74
SL+ + ++Y +I GIWT+ +K R NL D + ++K L+ K LI E+ ++ +
Sbjct: 94 SLSSEQEIVYALIDEAGQEGIWTKTIK--ARSNLHDAVFRTALKHLETKHLISEMKSVEA 151
Query: 75 KGKKHLMAVEFEPSKEISGGAWYSEGSLDTEFIKVVKSQCLKQI 118
+ +K + +PS +GGAWY++ LD EFI + I
Sbjct: 152 RNRKMYIKSSLQPSDRATGGAWYTDNELDEEFITQISHILFDHI 195
>gi|388857894|emb|CCF48559.1| related to RPC34-DNA-directed RNA polymerase III, 34 KD subunit
[Ustilago hordei]
Length = 533
Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 45/168 (26%), Positives = 81/168 (48%), Gaps = 22/168 (13%)
Query: 16 LTDHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVVNIHSK 75
L ++E ++Y I+ ++ GIWT+ +K +R L I+ + +KSL+ K L+K V ++
Sbjct: 91 LDENETMVYQHIKDSRNEGIWTKQLK--VRTGLHQTIINRCLKSLEQKQLVKAVKSVKYP 148
Query: 76 GKKHLMAVEFEPSKEISGGAWYSEGSLDTEFIKVVKSQCLKQIIKLK------------- 122
+K M PS E+SGG WY++ LDT FI + S + I+ K
Sbjct: 149 TRKIYMLYGLTPSIELSGGPWYTDNELDTGFINEL-SMAILNFIRSKSFPKNGQSRALFP 207
Query: 123 ------VATLEGISDSIKRSGAFKVDLTKQQIEEIVRALVLDNQIMEV 164
+ + + ++ SG + L + + ++ LV D QI ++
Sbjct: 208 TSHTSQLPSANAVHSYLRNSGLTETQLEVEHVVSLLDILVYDEQIEKI 255
>gi|312083987|ref|XP_003144089.1| RNA polymerase Rpc34 subunit family protein [Loa loa]
gi|307760747|gb|EFO19981.1| RNA polymerase Rpc34 subunit family protein [Loa loa]
Length = 294
Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 56/233 (24%), Positives = 98/233 (42%), Gaps = 39/233 (16%)
Query: 17 TDHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVVNIHSKG 76
T E+LIY +I GIW R+++ R L + K +K L+ + L+K + + +
Sbjct: 81 THEEQLIYSLIEESGKKGIWIREIRD--RTGLSQTQMRKVLKVLEQRKLVKSIKAVGTT- 137
Query: 77 KKHLMAVEFEPSKEISGGAWYSEGSLDTEFIKVVKSQCLKQII----------------- 119
KK M + ++GG +YS+ LD++F++ + C+ +
Sbjct: 138 KKCYMLYGAVADESLTGGTFYSDQQLDSQFVETLAHICVAMLQSKRKFSEDNHKNDPAAA 197
Query: 120 -KLKVATLEGISDSIKRSGAFKVDLTKQQIEEIVRALVLDNQIMEVKSNGSGEFTNIPVG 178
+ ++ I+ G +V L+ IE I+ +LD ++E +++G
Sbjct: 198 REFAFVRSTEVAQFIREKGVCRVQLSVADIESILSVALLDG-LIERRADGM--------- 247
Query: 179 KVCYKNVSKGGGGGEPKTGSLASIPCGVCPQINICKPDGVISPKTCVYYTKWL 231
Y+ + P PC CP CKP VISP+ C Y+ WL
Sbjct: 248 ---YRALISKITRCAPSL-----CPCIHCPIQADCKPGHVISPQNCEYFASWL 292
>gi|406606568|emb|CCH42067.1| DNA-directed RNA polymerase III subunit [Wickerhamomyces ciferrii]
Length = 300
Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 50/174 (28%), Positives = 84/174 (48%), Gaps = 25/174 (14%)
Query: 11 APSDSLTDHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVV 70
A ++T E +IY I + GIWT+ +K R NL ++V + +KSL+ + IK V
Sbjct: 75 AKRANMTSDESIIYSYIEASGREGIWTKTIKA--RTNLHQHVVLRCLKSLEGQRFIKSVK 132
Query: 71 NIHSKGKKHLMAVEFEPSKEISGGAWYSEGSLDTEFI--------KVVKSQCLKQII--- 119
++ +K M PS E++GG W+++G LD+EF+ + V ++ I
Sbjct: 133 SVKFPTRKIYMLYHLTPSIEVTGGPWFTDGELDSEFVDSLLTIVWRFVTNKTFPNIFNDD 192
Query: 120 ------KLKVA------TLEGISDSIKRSGAFKVDLTKQQIEEIVRALVLDNQI 161
+L A TLE I + I RS +L + I + + LV D+++
Sbjct: 193 ANLKKNQLYAANYKNYSTLEEILEFITRSQVTSEELIENDIRSLCQVLVYDDKL 246
>gi|115468826|ref|NP_001058012.1| Os06g0603400 [Oryza sativa Japonica Group]
gi|113596052|dbj|BAF19926.1| Os06g0603400 [Oryza sativa Japonica Group]
Length = 146
Score = 71.2 bits (173), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 33/65 (50%), Positives = 41/65 (63%), Gaps = 8/65 (12%)
Query: 171 EFTNIPVGKVCYKNVSKGGGGGEPKTGSLASIPCGVCPQINICKPDGVISPKTCVYYTKW 230
++ G+VCY+ GG + G + IPCGVCP+I+ C PDGVISP TCVYY KW
Sbjct: 88 HLRDLRAGRVCYRR------GGPVQGGMMERIPCGVCPRIDECSPDGVISPSTCVYYKKW 141
Query: 231 L--DF 233
L DF
Sbjct: 142 LQMDF 146
>gi|403221005|dbj|BAM39138.1| DNA-directed RNA polymerase III [Theileria orientalis strain
Shintoku]
Length = 260
Score = 71.2 bits (173), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 57/219 (26%), Positives = 101/219 (46%), Gaps = 18/219 (8%)
Query: 16 LTDHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSL-QNKSLIKEVVNIHS 74
L D E ++ I + + GIWT D+++ L + V +++K+L + LIK + +IH
Sbjct: 56 LQDFEYSVFCTIETAGNKGIWTADIRK--ITGLLIHQVQRAVKNLCEVARLIKPLTDIHH 113
Query: 75 KGKKHLMAVEFEPSKEISGGAWYSEGSLDTEFIKVVKSQCLKQIIKLKVATLEGISDSIK 134
K +K + EPS +I+GG++Y G + ++ ++ Q + K AT++ I +K
Sbjct: 114 KNRKLFILSTLEPSIDITGGSFYLNGEFNELLVEKLQEQIGLFLSKNIGATIDQILSYLK 173
Query: 135 RSGAFKVDLTKQQIEEIVRALVLDNQIMEVKSNGSGEFTNIPVGKVCYKNVSKGGGGGEP 194
S + +L ++ + +++ L+L+N++ N F C N K
Sbjct: 174 SSKLIQGELVEKDVYSVIKLLILENKVYTSVKNEQKIFI------WCGNNYIKFSEEA-- 225
Query: 195 KTGSLASIPCGVCPQINICKPDGV--ISPKTCVYYTKWL 231
+PC C I+ C V I P C Y T WL
Sbjct: 226 -----FEVPCFSCNLIDSCNFGLVHKICPSKCKYMTAWL 259
>gi|82793544|ref|XP_728084.1| DNA-directed RNA polymerase III 34 kDa polypeptide [Plasmodium
yoelii yoelii 17XNL]
gi|23484251|gb|EAA19649.1| probable DNA-directed RNA polymerase iii 34 kDa polypeptide
[Plasmodium yoelii yoelii]
Length = 299
Score = 71.2 bits (173), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 55/246 (22%), Positives = 107/246 (43%), Gaps = 31/246 (12%)
Query: 1 MSKRKRPDSNAPSDSLTDHERLIYDVIRSKQDMGIWTRDMKRELR--------VNLPDNI 52
++K + + L+D + LI+ + + Q GIWT D++++ + ++ P I
Sbjct: 68 ITKMRTEEVTKKLKELSDIDFLIFTKVENSQSNGIWTADLRKQTKLLVSKKKYISXPPRI 127
Query: 53 VTKSIKSLQNKS----LIKEVVNIHSKGKKHLMAVEFEPSKEISGGAWYSEGSLDTEFIK 108
T I S+ NK +V NIH K +K + + E S+++ GG++Y +G + + +
Sbjct: 128 YT--IFSIANKCCMFFFFFQVNNIHVKNRKMYILYDIEASEKVIGGSFYKDGEFNKKVVD 185
Query: 109 VVKSQCLKQIIKLKVATLEGISDSIKRSGAFKVDLTKQQIEEIVRALVLDNQIMEVKSNG 168
++ + + + + + IK+ + I +++ L+ + +I K+N
Sbjct: 186 YIRENICFYLYNNNNSNVTSVINYIKKLNNSVGYFSDNDIYRVIKTLLFEERIKIYKNND 245
Query: 169 SGEFTNIPVGKVCYKNVSKGGGGGEPKTGSLASIPCGVCPQINICKPD--GVISPKTCVY 226
+ E + Y N K L PC C N C D I+PKTC+Y
Sbjct: 246 NEEL-------IYYYN--------NEKKKILNQFPCFSCDIFNKCNFDTKTTINPKTCLY 290
Query: 227 YTKWLD 232
+L+
Sbjct: 291 LNVYLN 296
>gi|71024497|ref|XP_762478.1| hypothetical protein UM06331.1 [Ustilago maydis 521]
gi|46097727|gb|EAK82960.1| hypothetical protein UM06331.1 [Ustilago maydis 521]
Length = 540
Score = 71.2 bits (173), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 45/168 (26%), Positives = 81/168 (48%), Gaps = 22/168 (13%)
Query: 16 LTDHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVVNIHSK 75
L ++E L+Y I+ ++ GIWT+ +K R L I+ + +KSL+ K L+K V ++
Sbjct: 93 LDENETLVYSHIKDSRNEGIWTKQLK--ARTGLHQTIINRCLKSLEQKQLVKAVKSVKYP 150
Query: 76 GKKHLMAVEFEPSKEISGGAWYSEGSLDTEFIKVVKSQCLKQIIKLK------------- 122
+K M PS E+SGG WY++ LDT FI + S + ++ K
Sbjct: 151 TRKIFMLFGLTPSIELSGGPWYTDNELDTGFINEL-SMAILNFVRSKSFPKNGQSRALFP 209
Query: 123 ------VATLEGISDSIKRSGAFKVDLTKQQIEEIVRALVLDNQIMEV 164
+ + + I ++ S + +L + + ++ LV D QI ++
Sbjct: 210 TSHTSQLPSAKSIHSYLRSSNLTETELEVEHVASLLDILVYDEQIEKI 257
>gi|403217351|emb|CCK71845.1| hypothetical protein KNAG_0I00540 [Kazachstania naganishii CBS
8797]
Length = 335
Score = 70.9 bits (172), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 34/97 (35%), Positives = 57/97 (58%), Gaps = 2/97 (2%)
Query: 11 APSDSLTDHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVV 70
A +++ E L+Y I + GIW++ +K R NL ++V K +KSL+++ +K V
Sbjct: 94 AKKTAMSSEESLVYSYIEASGREGIWSKTIKA--RTNLHQHVVLKCLKSLESQRYVKSVK 151
Query: 71 NIHSKGKKHLMAVEFEPSKEISGGAWYSEGSLDTEFI 107
++ +K M +PS E++GG W++EG LD EFI
Sbjct: 152 SVKYPTRKIYMLYNLQPSVEVTGGPWFTEGELDVEFI 188
>gi|150865268|ref|XP_001384413.2| 34-kDa subunit of RNA polymerase III (C) [Scheffersomyces stipitis
CBS 6054]
gi|149386524|gb|ABN66384.2| 34-kDa subunit of RNA polymerase III (C) [Scheffersomyces stipitis
CBS 6054]
Length = 322
Score = 70.9 bits (172), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 56/92 (60%), Gaps = 2/92 (2%)
Query: 16 LTDHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVVNIHSK 75
+TD E ++Y I + GIWT+ +K + NL ++V + +K+L+N+ IK + ++
Sbjct: 79 MTDDEAMVYSYIEASGREGIWTKTIKA--KTNLHQHVVVRCLKALENQRYIKSIKSVKHP 136
Query: 76 GKKHLMAVEFEPSKEISGGAWYSEGSLDTEFI 107
+K M +PS E++GG W+++ LDTEFI
Sbjct: 137 TRKIYMLYNLQPSIEVTGGPWFTDSELDTEFI 168
>gi|410730683|ref|XP_003980162.1| hypothetical protein NDAI_0G05030 [Naumovozyma dairenensis CBS 421]
gi|401780339|emb|CCK73486.1| hypothetical protein NDAI_0G05030 [Naumovozyma dairenensis CBS 421]
Length = 330
Score = 70.9 bits (172), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 34/93 (36%), Positives = 56/93 (60%), Gaps = 2/93 (2%)
Query: 15 SLTDHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVVNIHS 74
S++ E L+Y I + GIW++ +K R NL ++V K +KSL+++ +K V ++
Sbjct: 82 SMSSEEALVYSYIEASGREGIWSKTIKA--RTNLHQHVVLKCLKSLESQRYVKSVKSVKF 139
Query: 75 KGKKHLMAVEFEPSKEISGGAWYSEGSLDTEFI 107
+K M +PS E++GG W++EG LD EFI
Sbjct: 140 PTRKIYMLYNLQPSIEVTGGPWFTEGELDVEFI 172
>gi|254574058|ref|XP_002494138.1| RNA polymerase III subunit C34 [Komagataella pastoris GS115]
gi|238033937|emb|CAY71959.1| RNA polymerase III subunit C34 [Komagataella pastoris GS115]
gi|328354043|emb|CCA40440.1| DNA-directed RNA polymerase III subunit C34 [Komagataella pastoris
CBS 7435]
Length = 317
Score = 70.9 bits (172), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 61/230 (26%), Positives = 105/230 (45%), Gaps = 36/230 (15%)
Query: 15 SLTDHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVVNIHS 74
+++ E +IY I GIWT+ +K + NL +IV + +KSL+N+S IK V ++
Sbjct: 85 NMSQDEAMIYSYIEGSGREGIWTKTIKA--KTNLHQHIVLRCLKSLENQSFIKSVKSVKH 142
Query: 75 KGKKHLMAVEFEPSKEISGGAWYSEGSLDTEFIKVV----------------------KS 112
+K M PS E++GG W+++ LDTEFI + K+
Sbjct: 143 PTRKIYMLYHLTPSIEVTGGPWFTDSELDTEFIDSLLIIIWRFIANKTYPNLFGTEGNKA 202
Query: 113 QCLKQIIKLKVA-TLEGISDSIKRSGAFKVDLTKQQIEEIVRALVLDNQIMEVKSNGSGE 171
Q + + L A + I+ I+ SG ++LT + + L + +I +++ +
Sbjct: 203 QLYEFSVGLNNAPDVAQINKFIRGSGITNIELTDDDVRSLCDVLCYEEKIEKLE-----K 257
Query: 172 FTNIPVGKVCYKNVSKGGGGGEPKTGSLASIPC-----GVCPQINICKPD 216
F + KV + +V + EP+ G +A I V I+I PD
Sbjct: 258 FGKVDSYKVTWHSVEEAVKLDEPE-GDVAPIFTFYDNHKVVNAIDIENPD 306
>gi|260940459|ref|XP_002614529.1| hypothetical protein CLUG_05307 [Clavispora lusitaniae ATCC 42720]
gi|238851715|gb|EEQ41179.1| hypothetical protein CLUG_05307 [Clavispora lusitaniae ATCC 42720]
Length = 322
Score = 70.9 bits (172), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 50/210 (23%), Positives = 90/210 (42%), Gaps = 34/210 (16%)
Query: 15 SLTDHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVVNIHS 74
S+ D E+LIY I + GIWT+ +K + N+ ++V + +K L+ + IK + ++
Sbjct: 77 SMNDDEQLIYSYIEASGREGIWTKTLKA--KTNMHQHVVMRCLKQLEGQRYIKSIKSVKH 134
Query: 75 KGKKHLMAVEFEPSKEISGGAWYSEGSLDTEFIKVVKS---------------------- 112
+K M +PS +++GG W+++ LDTEFI + +
Sbjct: 135 PTRKIYMLYNLQPSIDVTGGPWFTDSELDTEFIDSLLTVVWRFIASKTFPAAFQDPTPNT 194
Query: 113 ---QCLKQIIKLKVATLEGISDSIKRSGAFKVDLTKQQIEEIVRALVLDNQIMEVKSNGS 169
Q + ATLE I + + +DL I + L+ ++++ VK
Sbjct: 195 NILQSVYPATHTGFATLESIMEFLTEHKITNIDLAINDIRSLCEVLIFEDKVELVKDTTD 254
Query: 170 GEFTNIPVGKVCYKNVSKGGGGGEPKTGSL 199
V KV +++V G G + L
Sbjct: 255 -------VYKVSWQSVLDAGYGRQYNESHL 277
>gi|451850732|gb|EMD64033.1| hypothetical protein COCSADRAFT_116947 [Cochliobolus sativus
ND90Pr]
Length = 368
Score = 70.9 bits (172), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 34/95 (35%), Positives = 56/95 (58%), Gaps = 2/95 (2%)
Query: 16 LTDHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVVNIHSK 75
LT ERLIY I Q GIW++ ++ R N+ +TK +KSL++K L++ V+++ +
Sbjct: 100 LTPDERLIYSYIDQVQTEGIWSKALRS--RTNVTQQTLTKCLKSLESKDLVQSVMSVKNP 157
Query: 76 GKKHLMAVEFEPSKEISGGAWYSEGSLDTEFIKVV 110
+K + +PS++I+GG W SEG D I +
Sbjct: 158 NRKMYLLKHLKPSEDIAGGPWQSEGDFDMALIDTI 192
Score = 45.4 bits (106), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 45/85 (52%), Gaps = 15/85 (17%)
Query: 148 IEEIVRALVLDNQIMEVKSNGSGEFTNIPVGKVCYKNVSKGGGGGEPKTGSLASIPCGVC 207
+E+++ +VLD+++ ++ +G+ T V +V V G PCG C
Sbjct: 293 MEQLLEMMVLDDRLEKI--SGTNYRT---VLRVTDTKVYNG----------FVDAPCGNC 337
Query: 208 PQINICKPDGVISPKTCVYYTKWLD 232
P ++C +G IS +TCVY+ +WL+
Sbjct: 338 PVFDLCGDEGEISARTCVYFGQWLE 362
>gi|451995926|gb|EMD88393.1| hypothetical protein COCHEDRAFT_1181344 [Cochliobolus
heterostrophus C5]
Length = 370
Score = 70.5 bits (171), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 33/95 (34%), Positives = 55/95 (57%), Gaps = 2/95 (2%)
Query: 16 LTDHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVVNIHSK 75
LT ERLIY I Q G+W++ ++ R N+ +TK +KSL++K L++ V+++ +
Sbjct: 102 LTPDERLIYSYIDQAQTEGVWSKALRS--RANVTQQTLTKCLKSLESKDLVQSVMSVKNP 159
Query: 76 GKKHLMAVEFEPSKEISGGAWYSEGSLDTEFIKVV 110
+K + PS++I+GG W SEG D I +
Sbjct: 160 NRKMYLLKHLTPSEDIAGGPWQSEGDFDMALIDTI 194
Score = 44.3 bits (103), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 22/30 (73%)
Query: 203 PCGVCPQINICKPDGVISPKTCVYYTKWLD 232
PCG CP ++C +G IS +TCVY+ +WL+
Sbjct: 335 PCGNCPVFDLCGDEGEISARTCVYFGQWLE 364
>gi|366988061|ref|XP_003673797.1| hypothetical protein NCAS_0A08580 [Naumovozyma castellii CBS 4309]
gi|342299660|emb|CCC67416.1| hypothetical protein NCAS_0A08580 [Naumovozyma castellii CBS 4309]
Length = 339
Score = 70.5 bits (171), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 34/93 (36%), Positives = 56/93 (60%), Gaps = 2/93 (2%)
Query: 15 SLTDHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVVNIHS 74
S++ E L+Y I + GIW++ +K R NL ++V K +KSL+++ +K V ++
Sbjct: 103 SMSAEEALVYSYIEASGREGIWSKTIKA--RTNLHQHVVLKCLKSLESQRYVKSVKSVKF 160
Query: 75 KGKKHLMAVEFEPSKEISGGAWYSEGSLDTEFI 107
+K M +PS E++GG W++EG LD EFI
Sbjct: 161 PTRKIYMLYNLQPSIEVTGGPWFTEGELDVEFI 193
>gi|428672752|gb|EKX73665.1| DNA-directed RNA polymerase III, putative [Babesia equi]
Length = 295
Score = 70.1 bits (170), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 67/222 (30%), Positives = 106/222 (47%), Gaps = 22/222 (9%)
Query: 16 LTDHERLIYDVIRSKQDMGIWTRDMKR--ELRVNLPDNIVTKSIKSLQNKSLIKEVVNIH 73
L E +Y ++ + + IW+ D+KR L V+L +TK++ + LIK V +I
Sbjct: 86 LQPAEYSVYCLVETAGNKSIWSADIKRITGLSVSLMVQRITKNLS--EGLRLIKPVRSIR 143
Query: 74 SKGKKHLMAVEFEPSKEISGGAWYSEGSLDTEFIKVVKSQCLKQIIKLKVATLEGISDSI 133
K ++ + EP+ EISGGA+Y +G + ++ +K Q + K TL I+D +
Sbjct: 144 YKNRRLYVLSHIEPADEISGGAFYYDGEFNEVLVEGMKDQVAMYLSKNMGRTLTQITDYL 203
Query: 134 KRSGAFKVDLTKQQIEEIVRALVLDNQIMEVKSNGSGEFTNIPVGKVCYKNVSKGGGGGE 193
K S + DL ++ + +V LVL+N++ SG N GK Y G +
Sbjct: 204 KSSNTIQGDLLEENVLAVVNLLVLENKVF------SGILEN---GKCIY----IWSGASD 250
Query: 194 PKTGSLA-SIPCGVCPQINICKPDGV---ISPKTCVYYTKWL 231
PK A S PC C + C+ GV P C + +KWL
Sbjct: 251 PKFAEDAFSTPCFSCNLADECRL-GVQDKFCPSNCDFLSKWL 291
>gi|422293632|gb|EKU20932.1| DNA-directed RNA polymerase III subunit RPC6 [Nannochloropsis
gaditana CCMP526]
Length = 268
Score = 70.1 bits (170), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 51/173 (29%), Positives = 94/173 (54%), Gaps = 12/173 (6%)
Query: 7 PDSNAPSDSLTDHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLI 66
P+ +L + L+Y V+ + GIW +D++ + + P + K +K+L+++ L+
Sbjct: 84 PNLAEKMRNLGAEQLLVYQVVEKAGNKGIWHKDIRSQTSLQQP--ALKKILKNLESRQLV 141
Query: 67 KEVVNIHSKGKKHLMAVEFEPSKEISGGAWYSEGSLDTEFIKVVKSQCLKQIIK--LKVA 124
K +I SK +K + + EP+KEI+GG WY+E D EFI+ + S+ + IK K
Sbjct: 142 KSTSSISSKTRKLYLLYDLEPAKEITGGPWYTEHEFDHEFIEEL-SRAIYHFIKQQRKPP 200
Query: 125 TLEGISDSIKRSGAFK-------VDLTKQQIEEIVRALVLDNQIMEVKSNGSG 170
+L I+D ++ SG K V+L +++ I+ +L D +I V+++ G
Sbjct: 201 SLGIIADYVRNSGVSKVKSEIKNVELAPGEVQLIINSLAYDMKIEPVQNSLVG 253
>gi|294654533|ref|XP_456595.2| DEHA2A06248p [Debaryomyces hansenii CBS767]
gi|199428958|emb|CAG84551.2| DEHA2A06248p [Debaryomyces hansenii CBS767]
Length = 323
Score = 70.1 bits (170), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 57/93 (61%), Gaps = 2/93 (2%)
Query: 15 SLTDHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVVNIHS 74
S+++ E +IY I + GIWT+ +K + NL +IV + +K+L+N+ IK + ++
Sbjct: 78 SMSEDEAMIYSYIEASGREGIWTKTIKA--KTNLHQHIVVRCLKALENQRYIKSIKSVKH 135
Query: 75 KGKKHLMAVEFEPSKEISGGAWYSEGSLDTEFI 107
+K M +PS E++GG W+++ LDTEFI
Sbjct: 136 PTRKIYMLYNLQPSIEVTGGPWFTDSELDTEFI 168
>gi|402221227|gb|EJU01296.1| hypothetical protein DACRYDRAFT_52685 [Dacryopinax sp. DJM-731 SS1]
Length = 503
Score = 69.7 bits (169), Expect = 8e-10, Method: Compositional matrix adjust.
Identities = 45/175 (25%), Positives = 82/175 (46%), Gaps = 24/175 (13%)
Query: 15 SLTDHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVVNIHS 74
+L E ++Y IR+ GIWT+ +K + NL ++ + +K L+ + L+K V N+
Sbjct: 85 ALQGDESMVYTHIRNSGTEGIWTKSLK--AKTNLHATVINRCLKQLEQRQLVKSVKNVKF 142
Query: 75 KGKKHLMAVEFEPSKEISGGAWYSEGSLDTEFIKVVKSQCLKQIIKLKVATLEGISDS-- 132
+K M +PS E++GG W+++ LD FI+ + Q + I+ KV T + D
Sbjct: 143 PTRKTYMLFNLKPSVELTGGPWFNDNELDVGFIEGL-LQAVYTFIEKKVNTQTFVGDDYQ 201
Query: 133 -------------------IKRSGAFKVDLTKQQIEEIVRALVLDNQIMEVKSNG 168
+ SG +V L + ++ ++ LV D +I + +G
Sbjct: 202 VWPTSRTDKYPTLADVRRFVHGSGLTEVKLEDEHVKSLLDVLVYDGKIESLPGSG 256
Score = 43.9 bits (102), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 20/33 (60%)
Query: 199 LASIPCGVCPQINICKPDGVISPKTCVYYTKWL 231
L+ IPCG+C + C P G ++ + C YY WL
Sbjct: 404 LSEIPCGLCEVFDFCAPKGPVNARDCQYYDDWL 436
>gi|171695538|ref|XP_001912693.1| hypothetical protein [Podospora anserina S mat+]
gi|170948011|emb|CAP60175.1| unnamed protein product [Podospora anserina S mat+]
Length = 403
Score = 69.7 bits (169), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 35/115 (30%), Positives = 60/115 (52%), Gaps = 2/115 (1%)
Query: 4 RKRPDSNAPSDSLTDHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNK 63
R R D+ + + RL+Y I G+W R +K LR+N+ D + IK L++K
Sbjct: 81 RSREDAKKYTSLPDEPTRLVYGEIDQAGQDGVWIRHIK--LRINIQDATLKACIKFLESK 138
Query: 64 SLIKEVVNIHSKGKKHLMAVEFEPSKEISGGAWYSEGSLDTEFIKVVKSQCLKQI 118
I + N+ +K + + +PS+ +GG W+++G LD FIKV++ + I
Sbjct: 139 GFISSMTNVEMPNRKMYIRADLKPSERATGGPWFTDGELDEAFIKVIEGIIFEYI 193
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 25/41 (60%)
Query: 191 GGEPKTGSLASIPCGVCPQINICKPDGVISPKTCVYYTKWL 231
G P + ++ PCG CP +C+ G ++P TCVY+ +WL
Sbjct: 347 GPPPLSSAVTEAPCGKCPVFELCQEGGPVAPSTCVYFQEWL 387
>gi|320581571|gb|EFW95791.1| RNA polymerase III subunit C34 [Ogataea parapolymorpha DL-1]
Length = 326
Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 50/202 (24%), Positives = 96/202 (47%), Gaps = 36/202 (17%)
Query: 14 DSLTDHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVVNIH 73
++++ E ++Y I + GIWT+ +K + NL ++V + +KSL+++S IK V ++
Sbjct: 90 NNMSSDEAMVYSYIEAAGREGIWTKTIKA--KTNLHQHVVQRCLKSLESQSYIKSVKSVK 147
Query: 74 SKGKKHLMAVEFEPSKEISGGAWYSEGSLDTEFI--------KVVKSQCLKQIIK----- 120
+K M PS E++GG W+++ LD++FI + V S+ + K
Sbjct: 148 YPQRKIYMLYHLTPSIEVTGGPWFTDSELDSDFIDSLLIVIWRFVASKSYPKCFKKGGMD 207
Query: 121 -----------LKVATLEGISDSIKRSGAFKVDLTKQQIEEIVRALVLDNQIMEVKSNGS 169
+ +LE IS I SG V+L+ I + L + ++++V +
Sbjct: 208 VEQYSYPVSNNHNLPSLEEISRFIGSSGVTSVELSLSDIRSLCSVLEYEEKLVQVDN--- 264
Query: 170 GEFTNIPVGKVCYKNVSKGGGG 191
+ K +++V + GGG
Sbjct: 265 -------LYKATWQSVLEAGGG 279
>gi|410080596|ref|XP_003957878.1| hypothetical protein KAFR_0F01470 [Kazachstania africana CBS 2517]
gi|372464465|emb|CCF58743.1| hypothetical protein KAFR_0F01470 [Kazachstania africana CBS 2517]
Length = 310
Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 57/93 (61%), Gaps = 2/93 (2%)
Query: 15 SLTDHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVVNIHS 74
+++ E L+Y I + GIW++ +K +R NL ++V K +KSL+++ +K V ++
Sbjct: 85 AMSSEEALVYSYIEASGREGIWSKTIK--MRTNLHQHVVLKCLKSLESQRYVKSVKSVKF 142
Query: 75 KGKKHLMAVEFEPSKEISGGAWYSEGSLDTEFI 107
+K M +PS +++GG W++EG LD EFI
Sbjct: 143 PTRKIYMLYHLQPSVDVTGGPWFTEGELDVEFI 175
>gi|342321651|gb|EGU13583.1| Hypothetical Protein RTG_00013 [Rhodotorula glutinis ATCC 204091]
Length = 581
Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 32/97 (32%), Positives = 57/97 (58%), Gaps = 2/97 (2%)
Query: 15 SLTDHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVVNIHS 74
S+ E+L+ D I+ +MGIW+R + + LP V K++K L+ + IK V ++ +
Sbjct: 98 SMDSEEKLVLDHIKEAGNMGIWSRTLN--AKTGLPRATVEKALKVLEGRKTIKRVKSVKA 155
Query: 75 KGKKHLMAVEFEPSKEISGGAWYSEGSLDTEFIKVVK 111
+K M +PS E++GG W+++ LDTE ++ +K
Sbjct: 156 PTRKIYMLAGIQPSVELTGGPWFTDNELDTELVEQLK 192
>gi|269860596|ref|XP_002650018.1| DNA-directed RNA polymerase III, subunit 14 [Enterocytozoon
bieneusi H348]
gi|220066569|gb|EED44046.1| DNA-directed RNA polymerase III, subunit 14 [Enterocytozoon
bieneusi H348]
Length = 240
Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 44/170 (25%), Positives = 90/170 (52%), Gaps = 17/170 (10%)
Query: 17 TDHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVVNIHSKG 76
+++E LI ++ G+W +D++ ++ N+P N + K +K L+ + LIK V I++
Sbjct: 66 SNYENLILSLLEKSGPKGLWIKDIR--IKANIPYNFLVKILKKLEQEQLIKSVKGINTNK 123
Query: 77 KKHLMAVEFEPSKEISGGAWYSEGSLDTEFIK---------VVKSQCLKQ----IIKLK- 122
K +++ + EP KE++GG W++ +D F+ ++K Q L II L
Sbjct: 124 KTYILY-DIEPDKEVTGGIWFTNNDVDLSFVNNLMEIIYQYILKHQALNNNKTDIICLSD 182
Query: 123 VATLEGISDSIKRSGAFKVDLTKQQIEEIVRALVLDNQIMEVKSNGSGEF 172
+AT++ I + I S +V ++K +++ ++ L D +I + N ++
Sbjct: 183 LATIDTIYNFIITSNILEVKISKNEVKILLETLEYDGRIETINYNTEEKY 232
>gi|443918030|gb|ELU38618.1| RNA polymerase rpc34 subunit domain-containing protein [Rhizoctonia
solani AG-1 IA]
Length = 491
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/99 (31%), Positives = 58/99 (58%), Gaps = 3/99 (3%)
Query: 20 ERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVVNIHSKGKKH 79
E ++Y I+ ++ GIWT+ +K L +I+T+++KSL+ K L+K + ++ +K
Sbjct: 73 ESIVYKKIQEAKNEGIWTKHLKS---TELHQSIITRALKSLEKKGLVKSIKSVKHPTRKI 129
Query: 80 LMAVEFEPSKEISGGAWYSEGSLDTEFIKVVKSQCLKQI 118
+ +PS E+SGG WY+ ++EF++ + CL I
Sbjct: 130 YILANLQPSVEVSGGPWYNNSEFESEFVQTLCKACLNFI 168
Score = 44.7 bits (104), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 20/33 (60%)
Query: 200 ASIPCGVCPQINICKPDGVISPKTCVYYTKWLD 232
A PC CPQ + C DG ++ + C YY+ WL+
Sbjct: 452 AQSPCHTCPQFDFCHDDGPVNARECQYYSTWLN 484
>gi|167533399|ref|XP_001748379.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163773191|gb|EDQ86834.1| predicted protein [Monosiga brevicollis MX1]
Length = 412
Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 57/221 (25%), Positives = 100/221 (45%), Gaps = 42/221 (19%)
Query: 16 LTDHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVVNIHSK 75
L+ E+LIY +I G++ +D+K + +L + K IK L+++ IKE +I S
Sbjct: 125 LSTQEQLIYGIIEDAGTKGVFHQDLKP--KSHLDPRTINKIIKRLKSEKYIKEASSIKSG 182
Query: 76 GKKHLMAVEFEPSKEISGGAWYSEGSLDTEFIKVVKSQCLKQI--------------IKL 121
K+ + E E E SGG WY+ D +F+ +++ C+KQ+ +
Sbjct: 183 KKRLYILAELEVDTEHSGGPWYAGQDFDGQFVDIMRRICIKQLQERLNRPYDSPLHKYQS 242
Query: 122 KVATLEGISDSIKRSGAFKVDLTKQQIEEIVRALVLDNQIMEVKSNGSG----EFTNIPV 177
T + I D I S + DL+ +E+++ LV D M ++ +G T IP+
Sbjct: 243 SWLTAQEILDFIANSKIAQQDLSVGDMEKLLETLVYDR--MAIRGTRAGRRAYRLTKIPL 300
Query: 178 GKVCYKNVSKGGGGGEPKTGSLASIPCGVC---PQINICKP 215
P++ ++ + PCG C Q+ I +P
Sbjct: 301 ----------------PRS-AVHTAPCGHCKETKQVTIPQP 324
>gi|358058137|dbj|GAA96023.1| hypothetical protein E5Q_02683 [Mixia osmundae IAM 14324]
Length = 595
Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 30/96 (31%), Positives = 57/96 (59%), Gaps = 2/96 (2%)
Query: 15 SLTDHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVVNIHS 74
S+ +L+YD IR+ ++GIWT+ +K + NL ++++ +K L+ +K V ++ +
Sbjct: 142 SMPVENKLVYDTIRAAGNVGIWTKTLK--TKTNLHQTVISRVLKQLEKDKQVKCVKSVKT 199
Query: 75 KGKKHLMAVEFEPSKEISGGAWYSEGSLDTEFIKVV 110
++ M E PS E+SGG W+ + LD +FI ++
Sbjct: 200 PTRRIYMLAELTPSAELSGGPWFHDNELDLDFINML 235
>gi|151944532|gb|EDN62810.1| RNA polymerase C [Saccharomyces cerevisiae YJM789]
Length = 317
Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/93 (35%), Positives = 56/93 (60%), Gaps = 2/93 (2%)
Query: 15 SLTDHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVVNIHS 74
+++ E L+Y I + GIW++ +K R NL ++V K +KSL+++ +K V ++
Sbjct: 85 TMSAEEALVYSYIEASGREGIWSKTIKA--RTNLHQHVVLKCLKSLESQRYVKSVKSVKF 142
Query: 75 KGKKHLMAVEFEPSKEISGGAWYSEGSLDTEFI 107
+K M +PS EI+GG W+++G LD EFI
Sbjct: 143 PTRKIYMLYSLQPSVEITGGPWFTDGELDIEFI 175
>gi|340052857|emb|CCC47143.1| conserved hypothetical protein [Trypanosoma vivax Y486]
Length = 368
Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 65/280 (23%), Positives = 113/280 (40%), Gaps = 65/280 (23%)
Query: 14 DSLTDHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVVNIH 73
+S+ + L+ D IR+ + GI + ++R LP + V KSI+ L + IKE
Sbjct: 93 NSIPEGPSLVLDAIRASGNSGIDQAALCAKIR--LPKSEVIKSIQMLLAQKRIKERRCFS 150
Query: 74 SKGKKHLMAVEFEPSKEISGGAWYS---EGSLDTEFIKVVKSQCLKQIIKLKVATLEGIS 130
++ K+ + EFEPS E++GG +Y +D F+ ++ L + + + +LE I+
Sbjct: 151 NRAKRIYLLFEFEPSDEVTGGTFYGGEDSREMDVWFVDEMRRLILAFVAQRRSVSLEEIT 210
Query: 131 DSI-KRSGAFKVD---------------------------------LTKQQIEEIVRALV 156
+ + + A D ++ + + +V+ LV
Sbjct: 211 RYLCEPTSALASDTAPSDSSIVVVTVSTDGSSATSVGGNNRGTAKRISPRDAQLLVQTLV 270
Query: 157 LDNQI--------------MEVKSNGSGEFTNIPVGKVCYKNVSKGGGGGEPKTGSLAS- 201
LD + + N FT + G + G G P S AS
Sbjct: 271 LDGILDCVTLSDTAPAQYQLAFGRNAMRHFTAVSAGSGV--GTASDGAGRVPAHISRASA 328
Query: 202 -------IPCGVCPQINICKP--DGVISPKTCVYYTKWLD 232
+PC CPQ+ +C GVI+P+ C Y +WL+
Sbjct: 329 WAMPAVGLPCVGCPQLQVCSATGTGVINPRNCAYLNEWLN 368
>gi|366999516|ref|XP_003684494.1| hypothetical protein TPHA_0B03880 [Tetrapisispora phaffii CBS 4417]
gi|357522790|emb|CCE62060.1| hypothetical protein TPHA_0B03880 [Tetrapisispora phaffii CBS 4417]
Length = 360
Score = 67.8 bits (164), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 34/97 (35%), Positives = 56/97 (57%), Gaps = 2/97 (2%)
Query: 11 APSDSLTDHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVV 70
A ++T E L+Y I + GIWT+ +K R NL ++V K +KSL+++ +K V
Sbjct: 85 AKKSTMTAEESLVYSYIEASGREGIWTKTIKA--RTNLHQHVVLKCLKSLESQRYVKSVK 142
Query: 71 NIHSKGKKHLMAVEFEPSKEISGGAWYSEGSLDTEFI 107
++ +K M +PS +I+GG W+++ LD EFI
Sbjct: 143 SVKYPTRKIYMLYNLQPSIDITGGPWFTDSELDVEFI 179
>gi|255720276|ref|XP_002556418.1| KLTH0H12738p [Lachancea thermotolerans]
gi|238942384|emb|CAR30556.1| KLTH0H12738p [Lachancea thermotolerans CBS 6340]
Length = 310
Score = 67.8 bits (164), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 46/172 (26%), Positives = 81/172 (47%), Gaps = 24/172 (13%)
Query: 15 SLTDHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVVNIHS 74
++T E L+Y I + GIWT+ +K R NL +V+K +KSL+++ +K V ++
Sbjct: 85 AMTADEALVYSYIEASGREGIWTKTIKA--RTNLHTVVVSKCLKSLESQRYVKSVKSVKF 142
Query: 75 KGKKHLMAVEFEPSKEISGGAWYSEGSLDTEFIKVVKS---------------------- 112
+K M +PS E++GG W+++ LD EFI + +
Sbjct: 143 PTRKIYMLYNLQPSIEVTGGPWFTDSELDVEFINSLLTIVWRFVSERTYPNGFNNFTGGR 202
Query: 113 QCLKQIIKLKVATLEGISDSIKRSGAFKVDLTKQQIEEIVRALVLDNQIMEV 164
+ L AT + I + I + V+L+ I + + LV DN++ +V
Sbjct: 203 EVLYAAHVNNFATTDDILEFIISAKVANVELSTADIRSLCQVLVYDNKLEKV 254
>gi|256273367|gb|EEU08305.1| Rpc34p [Saccharomyces cerevisiae JAY291]
Length = 317
Score = 67.8 bits (164), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 52/215 (24%), Positives = 95/215 (44%), Gaps = 44/215 (20%)
Query: 15 SLTDHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVVNIHS 74
+++ E L+Y I + GIW++ +K R NL ++V K +KSL+++ +K V ++
Sbjct: 85 TMSAEEALVYSYIEASGREGIWSKTIKA--RTNLHQHVVLKCLKSLESQRYVKSVKSVKF 142
Query: 75 KGKKHLMAVEFEPSKEISGGAWYSEGSLDTEFIKVVKSQCLKQIIK-------------- 120
+K M +PS +I+GG W+++G LD EFI + + + I +
Sbjct: 143 PTRKIYMLYSLQPSVDITGGPWFTDGELDIEFINSLLTIVWRFISENTFPNGFKNFENGP 202
Query: 121 ----------LKVATLEGISDSIKRSGAFKVDLTKQQIEEIVRALVLDNQIMEVKSNGSG 170
+T + I + I + V+LT I + LV D+++ +V +
Sbjct: 203 KKNVFYAPNVKNYSTTQEILEFITAAQVANVELTPSNIRSLCEVLVYDDKLEKVTHD--- 259
Query: 171 EFTNIPVGKVCYKN-----VSKGGGGGEPKTGSLA 200
CY+ + G GEP+ G+ A
Sbjct: 260 ----------CYRATLESILQMNQGEGEPEAGNKA 284
>gi|313224681|emb|CBY20472.1| unnamed protein product [Oikopleura dioica]
Length = 301
Score = 67.4 bits (163), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 56/232 (24%), Positives = 101/232 (43%), Gaps = 42/232 (18%)
Query: 20 ERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVVNIHSKGKKH 79
E +Y +I ++MG+ ++ ++ V D +T+++ + K LIK+V K+
Sbjct: 94 EEPVYRLIAEGKNMGVLKSEIMAQVDVKKRD--LTRTLAEFERKKLIKKV----GSPKQK 147
Query: 80 LMAVEFEPSKEISGGAWYSEGSLDTEFI----KVVKSQCLKQII--------------KL 121
+ P ++GGA+Y D E + ++K L QI+ +
Sbjct: 148 YFLYDVTPDHTVTGGAFYDNDRFDKELVDGIMHILKPH-LTQIMDAQKQSDTHPSLLFRA 206
Query: 122 KVATLEGISDSIKRSGAFKVDLTKQQIEEIVRALVLDNQIMEVKSNGSGEFTNIPVGKVC 181
T I+D + K LT+ +++ ALVL+ + ++ P+
Sbjct: 207 ASVTPGQIADWLNEKRFVKFLLTETDCRQLLDALVLEGFADRRGDEYHAQLSDKPL---- 262
Query: 182 YKNVSKGGGGGEPKTGSLASIPCGVCPQINICKPDGVISPKTCVYYTKWLDF 233
V+ G L+ PCGVCP ++ C+P G ISP+TCVY + L++
Sbjct: 263 ---VASG----------LSFTPCGVCPLVDQCRPGGQISPQTCVYLDELLEW 301
>gi|323307394|gb|EGA60670.1| Rpc34p [Saccharomyces cerevisiae FostersO]
gi|323346740|gb|EGA81021.1| Rpc34p [Saccharomyces cerevisiae Lalvin QA23]
Length = 295
Score = 67.4 bits (163), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 52/215 (24%), Positives = 95/215 (44%), Gaps = 44/215 (20%)
Query: 15 SLTDHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVVNIHS 74
+++ E L+Y I + GIW++ +K R NL ++V K +KSL+++ +K V ++
Sbjct: 63 TMSAEEALVYSYIEASGREGIWSKTIKA--RTNLHQHVVLKCLKSLESQRYVKSVKSVKF 120
Query: 75 KGKKHLMAVEFEPSKEISGGAWYSEGSLDTEFIKVVKSQCLKQIIK-------------- 120
+K M +PS +I+GG W+++G LD EFI + + + I +
Sbjct: 121 PTRKIYMLYSLQPSVDITGGPWFTDGELDIEFINSLLTIVWRFISENTFPNGFKNFENGP 180
Query: 121 ----------LKVATLEGISDSIKRSGAFKVDLTKQQIEEIVRALVLDNQIMEVKSNGSG 170
+T + I + I + V+LT I + LV D+++ +V +
Sbjct: 181 KKNVFYAPNVKNYSTTQEILEFITAAQVANVELTPSNIRSLCEVLVYDDKLEKVTHD--- 237
Query: 171 EFTNIPVGKVCYKN-----VSKGGGGGEPKTGSLA 200
CY+ + G GEP+ G+ A
Sbjct: 238 ----------CYRVTLESILQMNQGEGEPEAGNKA 262
>gi|323303202|gb|EGA57001.1| Rpc34p [Saccharomyces cerevisiae FostersB]
Length = 241
Score = 67.4 bits (163), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 56/93 (60%), Gaps = 2/93 (2%)
Query: 15 SLTDHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVVNIHS 74
+++ E L+Y I + GIW++ +K R NL ++V K +KSL+++ +K V ++
Sbjct: 82 TMSAEEALVYSYIEASGREGIWSKTIKA--RTNLHQHVVLKCLKSLESQRYVKSVKSVKF 139
Query: 75 KGKKHLMAVEFEPSKEISGGAWYSEGSLDTEFI 107
+K M +PS +I+GG W+++G LD EFI
Sbjct: 140 PTRKIYMLYSLQPSVDITGGPWFTDGELDIEFI 172
>gi|322707597|gb|EFY99175.1| DNA-directed RNA polymerase III subunit RPC6 [Metarhizium
anisopliae ARSEF 23]
Length = 397
Score = 67.0 bits (162), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 46/189 (24%), Positives = 84/189 (44%), Gaps = 16/189 (8%)
Query: 17 TDHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVVNIHSKG 76
TD + ++Y +I GIW++ +++ R+N+ D+++ +IK LQ K LI N+
Sbjct: 101 TDEQVMVYSLIDDSGGDGIWSQTLQK--RLNMHDSVLKNAIKQLQTKGLIAPFKNVEHPN 158
Query: 77 KKHLMAVEFEPSKEISGGAWYSEGSLDTEFIKVVKSQCLKQIIKLKVATLEGISDSIKRS 136
KK + PS +GG WY++ +LD FI + L++++ V G +
Sbjct: 159 KKMYIKASIRPSDRATGGPWYTDQNLDEAFI-----EELQRVVFDFVKRQSGYRSTHGGG 213
Query: 137 GAFKVDLTKQQIEEIVRALVLDNQIMEVKSNGSGEFTNIPVGKVCYKNVSKGGGGGEPKT 196
GA ++ + +++ D K +GE + P K V G +
Sbjct: 214 GASASARSQVPTKGVIKGTAADKG----KKRDAGEMSKPPA-----KAVKASAGATPRRE 264
Query: 197 GSLASIPCG 205
+L +P G
Sbjct: 265 AALLPLPAG 273
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 44/95 (46%), Gaps = 6/95 (6%)
Query: 143 LTKQQIEEIVRALVLDNQIMEVKSNGSGEFTNIPVGKVCYKN------VSKGGGGGEPKT 196
L+++ ++++V LV DN I +K G + V K +N + GG EP
Sbjct: 298 LSEEDVKKLVDVLVWDNLIEPIKIAGRMGYRVSRVAKQSPQNWAGREDPTGRGGDPEPYL 357
Query: 197 GSLASIPCGVCPQINICKPDGVISPKTCVYYTKWL 231
PCG CP +C+ G + P C Y+ +WL
Sbjct: 358 SPYTEAPCGKCPVFELCEEGGPVGPSNCEYFKRWL 392
>gi|323352456|gb|EGA84957.1| Rpc34p [Saccharomyces cerevisiae VL3]
Length = 317
Score = 67.0 bits (162), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 52/215 (24%), Positives = 95/215 (44%), Gaps = 44/215 (20%)
Query: 15 SLTDHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVVNIHS 74
+++ E L+Y I + GIW++ +K R NL ++V K +KSL+++ +K V ++
Sbjct: 85 TMSAEEALVYSYIEASGREGIWSKTIKA--RTNLHQHVVLKCLKSLESQRYVKSVKSVKF 142
Query: 75 KGKKHLMAVEFEPSKEISGGAWYSEGSLDTEFIKVVKSQCLKQIIK-------------- 120
+K M +PS +I+GG W+++G LD EFI + + + I +
Sbjct: 143 PTRKIYMLYSLQPSVDITGGPWFTDGELDIEFINSLLTIVWRFISENTFPNGFKNFENGP 202
Query: 121 ----------LKVATLEGISDSIKRSGAFKVDLTKQQIEEIVRALVLDNQIMEVKSNGSG 170
+T + I + I + V+LT I + LV D+++ +V +
Sbjct: 203 KKNVFYAPNVKNYSTTQEILEFITAAQVANVELTPSNIRSLCEVLVYDDKLEKVTHD--- 259
Query: 171 EFTNIPVGKVCYKN-----VSKGGGGGEPKTGSLA 200
CY+ + G GEP+ G+ A
Sbjct: 260 ----------CYRVTLESILQMNQGEGEPEAGNKA 284
>gi|6324330|ref|NP_014400.1| Rpc34p [Saccharomyces cerevisiae S288c]
gi|417698|sp|P32910.1|RPC6_YEAST RecName: Full=DNA-directed RNA polymerase III subunit RPC6;
Short=RNA polymerase III subunit C6; AltName: Full=C34;
AltName: Full=DNA-directed RNA polymerase III 36 kDa
polypeptide
gi|4379|emb|CAA45278.1| DNA dependent RNA polymerase c(III) subunit c34 [Saccharomyces
cerevisiae]
gi|496721|emb|CAA54572.1| RNA polymerase III [Saccharomyces cerevisiae]
gi|1302473|emb|CAA96279.1| RPC34 [Saccharomyces cerevisiae]
gi|190408995|gb|EDV12260.1| RNA polymerase III 34 kDa subunit [Saccharomyces cerevisiae
RM11-1a]
gi|207341597|gb|EDZ69606.1| YNR003Cp-like protein [Saccharomyces cerevisiae AWRI1631]
gi|259148951|emb|CAY82195.1| Rpc34p [Saccharomyces cerevisiae EC1118]
gi|285814651|tpg|DAA10545.1| TPA: Rpc34p [Saccharomyces cerevisiae S288c]
gi|323331758|gb|EGA73171.1| Rpc34p [Saccharomyces cerevisiae AWRI796]
gi|323335724|gb|EGA77005.1| Rpc34p [Saccharomyces cerevisiae Vin13]
gi|349580938|dbj|GAA26097.1| K7_Rpc34p [Saccharomyces cerevisiae Kyokai no. 7]
gi|365763395|gb|EHN04924.1| Rpc34p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
gi|392296990|gb|EIW08091.1| Rpc34p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 317
Score = 67.0 bits (162), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 56/93 (60%), Gaps = 2/93 (2%)
Query: 15 SLTDHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVVNIHS 74
+++ E L+Y I + GIW++ +K R NL ++V K +KSL+++ +K V ++
Sbjct: 85 TMSAEEALVYSYIEASGREGIWSKTIKA--RTNLHQHVVLKCLKSLESQRYVKSVKSVKF 142
Query: 75 KGKKHLMAVEFEPSKEISGGAWYSEGSLDTEFI 107
+K M +PS +I+GG W+++G LD EFI
Sbjct: 143 PTRKIYMLYSLQPSVDITGGPWFTDGELDIEFI 175
>gi|401623803|gb|EJS41887.1| rpc34p [Saccharomyces arboricola H-6]
Length = 317
Score = 67.0 bits (162), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 56/93 (60%), Gaps = 2/93 (2%)
Query: 15 SLTDHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVVNIHS 74
+++ E L+Y I + GIW++ +K R NL ++V K +KSL+++ +K V ++
Sbjct: 85 TMSAEEALVYSYIEASGREGIWSKTIKA--RTNLHQHVVLKCLKSLESQRYVKSVKSVKF 142
Query: 75 KGKKHLMAVEFEPSKEISGGAWYSEGSLDTEFI 107
+K M +PS +I+GG W+++G LD EFI
Sbjct: 143 PTRKIYMLYSLQPSVDITGGPWFTDGELDIEFI 175
>gi|50294173|ref|XP_449498.1| hypothetical protein [Candida glabrata CBS 138]
gi|49528812|emb|CAG62474.1| unnamed protein product [Candida glabrata]
Length = 317
Score = 67.0 bits (162), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 55/93 (59%), Gaps = 2/93 (2%)
Query: 15 SLTDHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVVNIHS 74
+++ E L+Y I S GIW++ +K R NL ++V K +KSL+++ +K V ++
Sbjct: 85 TMSAEEALVYSYIESSGREGIWSKTIKA--RTNLHQHVVLKCLKSLESQRYVKSVKSVKH 142
Query: 75 KGKKHLMAVEFEPSKEISGGAWYSEGSLDTEFI 107
+K M +PS E++GG W+++ LD EFI
Sbjct: 143 PTRKIYMLYHLQPSIEVTGGPWFTDSELDVEFI 175
>gi|320591601|gb|EFX04040.1| DNA-directed RNA polymerase 3 subunit [Grosmannia clavigera kw1407]
Length = 453
Score = 66.6 bits (161), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 38/136 (27%), Positives = 73/136 (53%), Gaps = 4/136 (2%)
Query: 4 RKRPDSNAPS-DSLTDHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQN 62
R RP +A L + ++Y++I GIW R +K R+N+ D+++ + IK L+
Sbjct: 80 RYRPAVDAAKYKQLNQDQIMVYELIDDAGADGIWARSLKH--RLNMHDSVLKQCIKHLEV 137
Query: 63 KSLIKEVVNIHSKGKKHLMAVEFEPSKEISGGAWYSEGSLDTEFIKVVKSQCLKQIIKLK 122
K I+++ ++ + GKK + PS+ +GG WY++ + D FI ++ + + +I+ +
Sbjct: 138 KGYIRDMKSVENIGKKMYIKATLRPSERATGGPWYTDDTFDEAFIDQLQ-RVVFDLIRDR 196
Query: 123 VATLEGISDSIKRSGA 138
+ L +I R GA
Sbjct: 197 SSYLSRHGGAISRGGA 212
Score = 44.7 bits (104), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 20/29 (68%)
Query: 203 PCGVCPQINICKPDGVISPKTCVYYTKWL 231
PCG+CP ++C+ G +SP C Y+ +WL
Sbjct: 401 PCGLCPVFDLCEDGGPVSPANCEYFNRWL 429
>gi|401837479|gb|EJT41403.1| RPC34-like protein [Saccharomyces kudriavzevii IFO 1802]
Length = 317
Score = 66.6 bits (161), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 56/93 (60%), Gaps = 2/93 (2%)
Query: 15 SLTDHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVVNIHS 74
+++ E L+Y I + GIW++ +K R NL ++V K +KSL+++ +K V ++
Sbjct: 85 TMSAEESLVYSYIEASGREGIWSKTIKA--RTNLHQHVVLKCLKSLESQRYVKSVKSVKF 142
Query: 75 KGKKHLMAVEFEPSKEISGGAWYSEGSLDTEFI 107
+K M +PS +I+GG W+++G LD EFI
Sbjct: 143 PTRKIYMLYSLQPSVDITGGPWFTDGELDIEFI 175
>gi|324511218|gb|ADY44675.1| DNA-directed RNA polymerase III subunit RPC6 [Ascaris suum]
Length = 183
Score = 66.2 bits (160), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 34/100 (34%), Positives = 57/100 (57%), Gaps = 3/100 (3%)
Query: 19 HERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVVNIHSKGKK 78
E+LIY +I MGIW R+++ R LP V K++K L+ + L+K V + + KK
Sbjct: 83 EEQLIYSLIEESNKMGIWIREIRS--RTGLPQAQVRKALKVLEQRKLVKSVKAVGT-SKK 139
Query: 79 HLMAVEFEPSKEISGGAWYSEGSLDTEFIKVVKSQCLKQI 118
M E + ++GGA+YSE LD++F++ + C+ +
Sbjct: 140 CYMLYSVEADESLTGGAFYSEQQLDSQFVQTLVHLCVSML 179
>gi|380480792|emb|CCF42228.1| RNA polymerase Rpc34 subunit [Colletotrichum higginsianum]
Length = 394
Score = 66.2 bits (160), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 30/104 (28%), Positives = 56/104 (53%), Gaps = 2/104 (1%)
Query: 17 TDHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVVNIHSKG 76
TD +R++Y I GIW++ ++ R+N+ D+++ ++K LQ K LI N+
Sbjct: 102 TDEQRMVYGAIDEAGGDGIWSKSIQN--RLNMHDSVLKTALKQLQGKGLIAPFKNVEHPN 159
Query: 77 KKHLMAVEFEPSKEISGGAWYSEGSLDTEFIKVVKSQCLKQIIK 120
K+ + PS+ +GG W+++ +LD FI+ ++ I K
Sbjct: 160 KRMFIKASMRPSERATGGPWFTDSALDEAFIEELQRVIFDYIKK 203
Score = 42.4 bits (98), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 19/29 (65%)
Query: 203 PCGVCPQINICKPDGVISPKTCVYYTKWL 231
PCG CP ++C+ G +S CVY+ +WL
Sbjct: 363 PCGRCPVFDLCEEGGPVSASNCVYFNRWL 391
>gi|365758618|gb|EHN00452.1| Rpc34p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 232
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 55/92 (59%), Gaps = 2/92 (2%)
Query: 16 LTDHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVVNIHSK 75
++ E L+Y I + GIW++ +K R NL ++V K +KSL+++ +K V ++
Sbjct: 1 MSAEESLVYSYIEASGREGIWSKTIKA--RTNLHQHVVLKCLKSLESQRYVKSVKSVKFP 58
Query: 76 GKKHLMAVEFEPSKEISGGAWYSEGSLDTEFI 107
+K M +PS +I+GG W+++G LD EFI
Sbjct: 59 TRKIYMLYSLQPSVDITGGPWFTDGELDIEFI 90
>gi|358381396|gb|EHK19071.1| hypothetical protein TRIVIDRAFT_181834 [Trichoderma virens Gv29-8]
Length = 400
Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 51/92 (55%), Gaps = 2/92 (2%)
Query: 17 TDHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVVNIHSKG 76
TD + ++Y +I GIWT+ +++ R+N+ D+++ +IK LQ K LI N+
Sbjct: 101 TDEQVMVYSLIDDSGGDGIWTQTLQK--RLNMHDSVLKNAIKQLQAKGLIAPFKNVEHPN 158
Query: 77 KKHLMAVEFEPSKEISGGAWYSEGSLDTEFIK 108
KK + PS +GG WY++ LD FI+
Sbjct: 159 KKMYIKASIRPSDRATGGPWYTDQDLDEAFIE 190
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 44/95 (46%), Gaps = 6/95 (6%)
Query: 143 LTKQQIEEIVRALVLDNQIMEVKSNGSGEFTNIPVGK------VCYKNVSKGGGGGEPKT 196
L++ ++++V LV DN + +K G + V K ++ S GG E
Sbjct: 301 LSEGDVKKLVDVLVWDNLVEPIKVAGKVGYRVSRVAKQSVESWAGREDPSGRSGGPELYV 360
Query: 197 GSLASIPCGVCPQINICKPDGVISPKTCVYYTKWL 231
L PCG CP ++C+ G + P C Y+ KWL
Sbjct: 361 SPLTEAPCGRCPVFDLCEEGGPVGPSNCEYFKKWL 395
>gi|254582765|ref|XP_002499114.1| ZYRO0E04114p [Zygosaccharomyces rouxii]
gi|186703770|emb|CAQ43460.1| DNA-directed RNA polymerase III subunit RPC6 [Zygosaccharomyces
rouxii]
gi|238942688|emb|CAR30859.1| ZYRO0E04114p [Zygosaccharomyces rouxii]
Length = 312
Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 58/241 (24%), Positives = 102/241 (42%), Gaps = 38/241 (15%)
Query: 15 SLTDHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVVNIHS 74
+++ E L+Y I + GIWT+ +K + NL ++V K +KSL+++ +K V ++
Sbjct: 85 AMSAEESLVYSYIEASGREGIWTKTIKA--KTNLHQHVVLKCLKSLESQRYVKSVKSVKY 142
Query: 75 KGKKHLMAVEFEPSKEISGGAWYSEGSLDTEFIKVV------------------------ 110
+K M +PS +++GG W+++ LD EFI +
Sbjct: 143 PTRKIYMLYNLQPSIDVTGGPWFTDSELDVEFINSLLTIVWRFASDRTFPNGFKNFSGND 202
Query: 111 KSQCLKQIIKLKVATLEGISDSIKRSGAFKVDLTKQQIEEIVRALVLDNQIMEVKSNGSG 170
K + L +T++ I D I S V+LT I + LV D++ ME S+
Sbjct: 203 KKELLYAPNVKNYSTIQDILDFIVASQVVNVELTPANIRSLCDVLVYDDK-MEKISHDCY 261
Query: 171 EFTNIPVGKVCYKNVSKGGGGGEPKTGSLASIPCGVCPQINICKPDGVISPKTCVYYTKW 230
T V ++ GG G + + N+ P + K VY+ +W
Sbjct: 262 RVTLESVRQMT----QYGGLISNDDDGEFS-----IFDYFNLIAPSQ--NDKEAVYFDEW 310
Query: 231 L 231
+
Sbjct: 311 I 311
>gi|440632371|gb|ELR02290.1| hypothetical protein GMDG_05359 [Geomyces destructans 20631-21]
Length = 333
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 55/243 (22%), Positives = 98/243 (40%), Gaps = 52/243 (21%)
Query: 16 LTDHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVVNIHSK 75
LT + ++Y +I GIW++ +K + L ++++ ++K+L+ K LI ++ ++
Sbjct: 89 LTHEQEMVYSLIDESSTEGIWSKTIKN--KTALHESLMRSALKALETKRLISDMKSVEHP 146
Query: 76 GKKHLMAVEFEPSKEISGGAWYSEGSLDTEFIKVVKSQCLKQI----------------- 118
+K + PS++ +GGAWY++ LD FI+ + K I
Sbjct: 147 TRKMYIKSTLRPSEKATGGAWYTDNELDEAFIEGLTGVLYKYIEARSFYRSTSRRPLKRI 206
Query: 119 --------------IKL--------KVATLEGISDSIKRSGAFKVDLTKQQIEEIVRALV 156
I L +L ++ I+ S L+ I ++ LV
Sbjct: 207 AGRPTPKPAQGGDTITLLPLPPTYRGYPSLAELTLFIESSPITSTTLSADDISALLDVLV 266
Query: 157 LDNQIMEVKSNGSGEFTNIPVGKVCYKNVSKGGGGGEP--KTGSLASIPCGVCPQINICK 214
D +I +V + G V +K V K G E + L PCG CP +C+
Sbjct: 267 YDRRIEQVVAGPEG---------VAFKAVRKAIVGEEAVERGNGLTEAPCGRCPVFELCE 317
Query: 215 PDG 217
G
Sbjct: 318 EGG 320
>gi|358390496|gb|EHK39901.1| hypothetical protein TRIATDRAFT_295978 [Trichoderma atroviride IMI
206040]
Length = 407
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 51/92 (55%), Gaps = 2/92 (2%)
Query: 17 TDHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVVNIHSKG 76
TD + ++Y +I GIWT+ +++ R+N+ D+++ +IK LQ K LI N+
Sbjct: 101 TDEQVMVYSLIDDSGGDGIWTQTLQK--RLNMHDSVLKNAIKQLQAKGLIAPFKNVEHPN 158
Query: 77 KKHLMAVEFEPSKEISGGAWYSEGSLDTEFIK 108
KK + PS +GG WY++ LD FI+
Sbjct: 159 KKMYIKASIRPSDRATGGPWYTDQDLDEAFIE 190
Score = 53.1 bits (126), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 46/95 (48%), Gaps = 6/95 (6%)
Query: 143 LTKQQIEEIVRALVLDNQIMEVKSNGSGEFTNIPVGK------VCYKNVSKGGGGGEPKT 196
L++ ++++V LV DN I V+ G + + K ++ S GG E
Sbjct: 307 LSEGDVKKLVDVLVWDNLIEPVRIAGKVGYRVSRIAKQSVESWAGREDPSGRDGGPELYI 366
Query: 197 GSLASIPCGVCPQINICKPDGVISPKTCVYYTKWL 231
LA +PCG CP ++C+ G + P C Y+ KWL
Sbjct: 367 SPLAEVPCGRCPVFDLCEDGGPVGPSNCEYFKKWL 401
>gi|340924020|gb|EGS18923.1| DNA-directed RNA polymerase III-like protein [Chaetomium
thermophilum var. thermophilum DSM 1495]
Length = 400
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 54/101 (53%), Gaps = 2/101 (1%)
Query: 18 DHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVVNIHSKGK 77
D ++Y +I GIW R +K +L N+ +++V IK L++K I + N+ K
Sbjct: 95 DETMMVYSIIDEAGADGIWNRTIKNKL--NMHESVVKNCIKYLESKGYITAMKNVEHPNK 152
Query: 78 KHLMAVEFEPSKEISGGAWYSEGSLDTEFIKVVKSQCLKQI 118
K + PS+ +GG W++EG LDT FI+ ++ + I
Sbjct: 153 KMYIKASLRPSERATGGPWFTEGELDTAFIQELEGIVFEYI 193
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 21/43 (48%), Positives = 28/43 (65%)
Query: 191 GGEPKTGSLASIPCGVCPQINICKPDGVISPKTCVYYTKWLDF 233
G EP + +L PCG CP ++C+ G +SP CVY+TKWLD
Sbjct: 343 GAEPLSNALTEAPCGRCPVFDLCEEGGPVSPSNCVYFTKWLDL 385
>gi|322696633|gb|EFY88422.1| DNA-directed RNA polymerase III subunit Rpc34, putative
[Metarhizium acridum CQMa 102]
Length = 395
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 54/95 (56%), Gaps = 2/95 (2%)
Query: 17 TDHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVVNIHSKG 76
TD + ++Y +I GIW++ +++ R+N+ D+++ +IK LQ K LI N+
Sbjct: 101 TDEQVMVYSLIDDSGGDGIWSQTLQK--RLNMHDSVLKNAIKQLQAKGLIAPFKNVEHPN 158
Query: 77 KKHLMAVEFEPSKEISGGAWYSEGSLDTEFIKVVK 111
KK + PS +GG WY++ +LD FI+ ++
Sbjct: 159 KKMYIKASIRPSDRATGGPWYTDQNLDEAFIEELQ 193
Score = 53.1 bits (126), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 44/95 (46%), Gaps = 6/95 (6%)
Query: 143 LTKQQIEEIVRALVLDNQIMEVKSNGSGEFTNIPVGKVCYKNVSKG------GGGGEPKT 196
L+++ ++++V LV DN I +K G + V K +N + GG EP
Sbjct: 296 LSEEDVKKLVDVLVWDNLIEPIKIAGRMGYRVCRVAKQSPQNWAGREDPTGRGGDPEPYL 355
Query: 197 GSLASIPCGVCPQINICKPDGVISPKTCVYYTKWL 231
PCG CP +C+ G + P C Y+ +WL
Sbjct: 356 SPYTEAPCGKCPVFELCEEGGPVGPSNCEYFKRWL 390
>gi|444317567|ref|XP_004179441.1| hypothetical protein TBLA_0C01070 [Tetrapisispora blattae CBS 6284]
gi|387512482|emb|CCH59922.1| hypothetical protein TBLA_0C01070 [Tetrapisispora blattae CBS 6284]
Length = 334
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 55/93 (59%), Gaps = 2/93 (2%)
Query: 15 SLTDHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVVNIHS 74
+++ E L+Y I + GIW++ +K R NL +IV K +KSL+++ +K V ++
Sbjct: 84 TMSAEESLVYSYIEASGREGIWSKTIKA--RTNLHQHIVLKCLKSLESQRYVKSVKSVKF 141
Query: 75 KGKKHLMAVEFEPSKEISGGAWYSEGSLDTEFI 107
+K M +PS +++GG W+++ LD EFI
Sbjct: 142 PTRKIYMLYNLQPSTDVTGGPWFTDSELDVEFI 174
>gi|367053057|ref|XP_003656907.1| hypothetical protein THITE_2122199 [Thielavia terrestris NRRL 8126]
gi|347004172|gb|AEO70571.1| hypothetical protein THITE_2122199 [Thielavia terrestris NRRL 8126]
Length = 376
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 58/115 (50%), Gaps = 2/115 (1%)
Query: 4 RKRPDSNAPSDSLTDHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNK 63
R R ++ + D ++Y +I GIW R +K R+N+ + +V IK L++K
Sbjct: 81 RSREEAKKYTSLPNDETVMVYSIIDEAGADGIWNRTIKN--RLNMHEAVVKSCIKFLESK 138
Query: 64 SLIKEVVNIHSKGKKHLMAVEFEPSKEISGGAWYSEGSLDTEFIKVVKSQCLKQI 118
I + N+ KK + +PS+ +GG W++EG LDT FI ++ + I
Sbjct: 139 GYIASMKNVEHPNKKMYIKATLKPSERATGGPWFTEGELDTAFISELEGIVFEYI 193
Score = 46.2 bits (108), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 17/42 (40%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
Query: 193 EPKTGS-LASIPCGVCPQINICKPDGVISPKTCVYYTKWLDF 233
EP G+ L PCG CP ++C+ +SP CVY+ +WL+
Sbjct: 323 EPPLGNGLTEAPCGRCPVFDLCEEGAPVSPSNCVYFLQWLEL 364
>gi|310790201|gb|EFQ25734.1| RNA polymerase Rpc34 subunit [Glomerella graminicola M1.001]
Length = 396
Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 27/92 (29%), Positives = 51/92 (55%), Gaps = 2/92 (2%)
Query: 17 TDHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVVNIHSKG 76
TD +R++Y I GIW++ ++ R+N+ D+++ ++K LQ K LI N+
Sbjct: 102 TDEQRMVYGAIDEAGGDGIWSKSIQN--RLNMHDSVLKTALKQLQGKGLIAPFKNVEHPN 159
Query: 77 KKHLMAVEFEPSKEISGGAWYSEGSLDTEFIK 108
K+ + PS+ +GG W+++ + D FI+
Sbjct: 160 KRMFIKASMRPSERATGGPWFTDSAFDEAFIE 191
Score = 42.0 bits (97), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 19/29 (65%)
Query: 203 PCGVCPQINICKPDGVISPKTCVYYTKWL 231
PCG CP ++C+ G +S CVY+ +WL
Sbjct: 365 PCGRCPVFDLCEEGGPVSASNCVYFERWL 393
>gi|330927997|ref|XP_003302086.1| hypothetical protein PTT_13779 [Pyrenophora teres f. teres 0-1]
gi|311322744|gb|EFQ89810.1| hypothetical protein PTT_13779 [Pyrenophora teres f. teres 0-1]
Length = 400
Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 32/103 (31%), Positives = 57/103 (55%), Gaps = 2/103 (1%)
Query: 16 LTDHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVVNIHSK 75
LT ERL+Y I Q GIW++ ++ + N+ +TK +KSL+ K L++ V+++
Sbjct: 123 LTPDERLLYHHIDQVQADGIWSKALRN--KTNVTQQTLTKCLKSLEAKDLVQSVMSVKYP 180
Query: 76 GKKHLMAVEFEPSKEISGGAWYSEGSLDTEFIKVVKSQCLKQI 118
+K + +PS++I+GG W ++G D I+ + K I
Sbjct: 181 NRKMYLLKHLKPSEDIAGGIWQTDGEYDAALIEAISGAVAKYI 223
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
Query: 182 YKNVSKGGGGGEPKT-GSLASIPCGVCPQINICKPDGVISPKTCVYYTKWL 231
Y+ V + G E K PCG CP + C +G I+ +TCVY+ +WL
Sbjct: 343 YRTVLRNGESTESKVYNGFVDAPCGTCPVFDQCGDEGEITARTCVYFAEWL 393
>gi|378730779|gb|EHY57238.1| DNA-directed RNA polymerase III subunit C34 [Exophiala dermatitidis
NIH/UT8656]
Length = 453
Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 31/95 (32%), Positives = 56/95 (58%), Gaps = 2/95 (2%)
Query: 16 LTDHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVVNIHSK 75
LT E+++ ++ + G+WT+ +K R +L ++ + KSL+ K LIK + ++ +
Sbjct: 99 LTRDEKIVLFIVDAAGTAGVWTKTIK--FRSSLHGRVLDRVYKSLETKGLIKPMKHVKNP 156
Query: 76 GKKHLMAVEFEPSKEISGGAWYSEGSLDTEFIKVV 110
G+K + EPS+E SGGAW+S+G LD + +
Sbjct: 157 GRKMYILSGLEPSEEASGGAWFSDGRLDIGLVDTI 191
>gi|45190794|ref|NP_985048.1| AER191Wp [Ashbya gossypii ATCC 10895]
gi|44983836|gb|AAS52872.1| AER191Wp [Ashbya gossypii ATCC 10895]
gi|374108272|gb|AEY97179.1| FAER191Wp [Ashbya gossypii FDAG1]
Length = 314
Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 58/246 (23%), Positives = 99/246 (40%), Gaps = 50/246 (20%)
Query: 16 LTDHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVVNIHSK 75
++ E L+Y I + GIWT+ +K + NL ++V K +KSL+++ +K V ++
Sbjct: 86 MSSDEALVYSYIEASGREGIWTKTIKA--KTNLHQHVVLKCLKSLESQRYVKSVKSVKYP 143
Query: 76 GKKHLMAVEFEPSKEISGGAWYSEGSLDTEFIKVV------------------------- 110
+K M +PS +++GG W+++ LD EFI +
Sbjct: 144 TRKIYMLYNLQPSIDVTGGPWFTDSELDVEFINSLLTIVWRHTSERTYPNGFNNFGTGRD 203
Query: 111 KSQCLKQIIKLKVATLEGISDSIKRSGAFKVDLTKQQIEEIVRALVLDNQIMEVKSNGSG 170
K +K +T E I I + V+L+K I + LV D ++ +V +
Sbjct: 204 KEVLYTHTVK-NYSTTEEILKFISAARVSTVELSKSDIRSLCEVLVYDGKLEKVAFD--- 259
Query: 171 EFTNIPVGKVCYKNVSKG------GGGGEPKTGSLASIPCGVCPQINICKPDGVISPKTC 224
CY+ + GGEP G +A V ++ P K
Sbjct: 260 ----------CYRVTLQSVLQMTQPAGGEPGAG-VADQDFSVFDYASVISPSA--GDKEA 306
Query: 225 VYYTKW 230
VY +W
Sbjct: 307 VYIDEW 312
>gi|46107790|ref|XP_380954.1| hypothetical protein FG00778.1 [Gibberella zeae PH-1]
Length = 383
Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 51/91 (56%), Gaps = 2/91 (2%)
Query: 17 TDHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVVNIHSKG 76
TD + ++Y +I GIW++ +++ R+N+ D+++ ++K LQ K LI N+
Sbjct: 95 TDEQVMVYSLIDDSGGDGIWSQTLQK--RLNMHDSVLKNALKQLQTKGLIAPFKNVEHPN 152
Query: 77 KKHLMAVEFEPSKEISGGAWYSEGSLDTEFI 107
KK + PS +GG WY++ +LD FI
Sbjct: 153 KKMFIKASIRPSDRATGGPWYTDQNLDEAFI 183
Score = 50.4 bits (119), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 43/95 (45%), Gaps = 6/95 (6%)
Query: 143 LTKQQIEEIVRALVLDNQIMEVKSNGSGEFTNIPVGKVCYK------NVSKGGGGGEPKT 196
L++ ++++V LV DN + VK G + V K + + + GG E
Sbjct: 286 LSEHDVQKLVDVLVWDNLVESVKVAGKIGYRVSRVAKQSLESWAGRDDPTGREGGPESFV 345
Query: 197 GSLASIPCGVCPQINICKPDGVISPKTCVYYTKWL 231
+ PCG CP IC+ G + P C Y+ +WL
Sbjct: 346 SAFTEAPCGRCPVFEICEEGGPVGPSNCEYFKRWL 380
>gi|156841355|ref|XP_001644051.1| hypothetical protein Kpol_1014p11 [Vanderwaltozyma polyspora DSM
70294]
gi|156114685|gb|EDO16193.1| hypothetical protein Kpol_1014p11 [Vanderwaltozyma polyspora DSM
70294]
Length = 321
Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 31/93 (33%), Positives = 55/93 (59%), Gaps = 2/93 (2%)
Query: 15 SLTDHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVVNIHS 74
+++ E L+Y I + GIWT+ +K R NL ++V K +KSL+++ +K V ++
Sbjct: 87 TMSAEEALVYSHIEASGREGIWTKTIKA--RTNLHQHVVLKCLKSLESQRYVKSVKSVKY 144
Query: 75 KGKKHLMAVEFEPSKEISGGAWYSEGSLDTEFI 107
+K M +PS +++GG W+++ LD EFI
Sbjct: 145 PTRKIYMLYNLQPSIDVTGGPWFTDSELDVEFI 177
>gi|400602056|gb|EJP69681.1| RNA polymerase Rpc34 subunit [Beauveria bassiana ARSEF 2860]
Length = 383
Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 46/192 (23%), Positives = 83/192 (43%), Gaps = 26/192 (13%)
Query: 17 TDHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVVNIHSKG 76
TD + L+Y ++ GIW++ +++ R+N+ D+++ ++K LQ K LI N+
Sbjct: 95 TDEQVLVYSLVDDAGGDGIWSQTLQK--RLNMHDSVLKNALKQLQTKGLIAPFKNVEHPN 152
Query: 77 KKHLMAVEFEPSKEISGGAWYSEGSLDTEFIKVVKSQCLKQIIKLKVATLEGISDSIKRS 136
KK + PS +GG WY++ + D FI + L+++ + D IKR
Sbjct: 153 KKMYIKASIRPSDRATGGPWYTDQNFDDAFI-----EELQRV----------VFDFIKRQ 197
Query: 137 GAFKVDLTKQQIEEIVRAL---VLDNQIMEVKSNGSGEFTNIPVGKVCYKNVSKGGGGGE 193
++ +A V+ + K + E + P VSK G
Sbjct: 198 SSYHSTHAGSSSSARAQAPKKGVVQGGLERGKKRDAREMSKPP------SKVSKTAAGAT 251
Query: 194 PKTGSLASIPCG 205
P+ +L +P G
Sbjct: 252 PRKEALLPLPAG 263
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/94 (29%), Positives = 44/94 (46%), Gaps = 8/94 (8%)
Query: 143 LTKQQIEEIVRALVLDNQIMEVKSNGSGEFTNIPVGKVCYKNVSKGGG-----GGEPKTG 197
L+++ + +++ LV DN I V+ G + V +V ++ G G EP T
Sbjct: 288 LSEEDVRKLIDVLVWDNLIEPVRVAGKVGYR---VARVARQSTEPWAGREDPTGPEPYTS 344
Query: 198 SLASIPCGVCPQINICKPDGVISPKTCVYYTKWL 231
PCG CP +IC+ G + P C Y+ WL
Sbjct: 345 PYTEAPCGRCPVFDICEDGGPVGPSNCEYFKTWL 378
>gi|302927723|ref|XP_003054557.1| hypothetical protein NECHADRAFT_75405 [Nectria haematococca mpVI
77-13-4]
gi|256735498|gb|EEU48844.1| hypothetical protein NECHADRAFT_75405 [Nectria haematococca mpVI
77-13-4]
Length = 352
Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 52/92 (56%), Gaps = 2/92 (2%)
Query: 17 TDHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVVNIHSKG 76
TD + ++Y +I GIW++ +++ R+N+ D+++ ++K LQ K LI N+
Sbjct: 92 TDEQVMVYSLIDDSGGDGIWSQTLQK--RLNMHDSVLKNALKQLQTKGLIAPFKNVEHPN 149
Query: 77 KKHLMAVEFEPSKEISGGAWYSEGSLDTEFIK 108
KK + PS +GG WY++ +LD FI+
Sbjct: 150 KKMFIKASIRPSDRATGGPWYTDQNLDEAFIE 181
>gi|361124834|gb|EHK96901.1| putative DNA-directed RNA polymerase III subunit rpc6 [Glarea
lozoyensis 74030]
Length = 393
Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 55/95 (57%), Gaps = 2/95 (2%)
Query: 16 LTDHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVVNIHSK 75
L+ + L+Y +I + GIW + +K R+NL + +T +K LQ K L+ E+ ++ +
Sbjct: 119 LSADQELVYGLIDESEAEGIWHKTIK--ARLNLHETALTLCLKQLQQKGLVGEMKSVQNP 176
Query: 76 GKKHLMAVEFEPSKEISGGAWYSEGSLDTEFIKVV 110
+K + PS+ +GG+WY++G LD FI+ +
Sbjct: 177 SRKMWIKAHLRPSERATGGSWYTDGELDEVFIQQI 211
>gi|408391211|gb|EKJ70592.1| hypothetical protein FPSE_09237 [Fusarium pseudograminearum CS3096]
Length = 383
Score = 63.9 bits (154), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 51/91 (56%), Gaps = 2/91 (2%)
Query: 17 TDHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVVNIHSKG 76
TD + ++Y +I GIW++ +++ R+N+ D+++ ++K LQ K LI N+
Sbjct: 95 TDEQVMVYSLIDDSGGDGIWSQTLQK--RLNMHDSVLKNALKQLQAKGLIAPFKNVEHPN 152
Query: 77 KKHLMAVEFEPSKEISGGAWYSEGSLDTEFI 107
KK + PS +GG WY++ +LD FI
Sbjct: 153 KKMFIKASIRPSDRATGGPWYTDQNLDEAFI 183
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 43/95 (45%), Gaps = 6/95 (6%)
Query: 143 LTKQQIEEIVRALVLDNQIMEVKSNGSGEFTNIPVGKVCYKNVSKGG------GGGEPKT 196
L++ ++++V LV DN + VK G F V K ++ + GG E
Sbjct: 286 LSEHDVQKLVDVLVWDNLVESVKVAGKIGFRVSRVAKQSLESWAGRDDPTGREGGPESFV 345
Query: 197 GSLASIPCGVCPQINICKPDGVISPKTCVYYTKWL 231
+ PCG CP IC+ G + P C Y+ +WL
Sbjct: 346 SAFTEAPCGRCPVFEICEEGGPVGPSNCEYFKRWL 380
>gi|302404176|ref|XP_002999926.1| DNA-directed RNA polymerase III subunit RPC6 [Verticillium
albo-atrum VaMs.102]
gi|261361428|gb|EEY23856.1| DNA-directed RNA polymerase III subunit RPC6 [Verticillium
albo-atrum VaMs.102]
Length = 390
Score = 63.9 bits (154), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 60/113 (53%), Gaps = 4/113 (3%)
Query: 1 MSKRKRPDSNAPSDSL--TDHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIK 58
++ R RP + A L TD +R++Y +I GIW++ + L +N D ++ +IK
Sbjct: 85 LAWRWRPKAEAAKYKLCTTDEQRMVYGMIDDAGGDGIWSKTIINRLSMN--DTVMKAAIK 142
Query: 59 SLQNKSLIKEVVNIHSKGKKHLMAVEFEPSKEISGGAWYSEGSLDTEFIKVVK 111
L K LI N+ KK + +PS+ +GG W+++ +LD FI+ ++
Sbjct: 143 QLHIKGLIVPFKNVEHPNKKMYIKASMQPSERATGGPWFTDQTLDEAFIEELQ 195
Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 48/116 (41%), Gaps = 9/116 (7%)
Query: 125 TLEGISDSIKRSG-AFKVDLTKQQIEEIVRALVLDNQIMEVKSNGSGEFTNIPVGKVCYK 183
T+ I+ I ++G + L I+++V LV D + ++ G K
Sbjct: 272 TVRDIARFISQAGITTETTLGVDDIQKLVDVLVFDGLVEAIRVGGKHGLRVRRAAKQSLG 331
Query: 184 NVSKGG--------GGGEPKTGSLASIPCGVCPQINICKPDGVISPKTCVYYTKWL 231
N + G G EP PCG CP ++C+ G +S CVYY +WL
Sbjct: 332 NWAGQGADESGIERGAPEPYANGYTEAPCGRCPVFDLCEEGGPVSASNCVYYQRWL 387
>gi|367010832|ref|XP_003679917.1| hypothetical protein TDEL_0B05770 [Torulaspora delbrueckii]
gi|359747575|emb|CCE90706.1| hypothetical protein TDEL_0B05770 [Torulaspora delbrueckii]
Length = 309
Score = 63.9 bits (154), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 30/93 (32%), Positives = 55/93 (59%), Gaps = 2/93 (2%)
Query: 15 SLTDHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVVNIHS 74
+++ E L+Y I + GIWT+ +K + NL ++V K +KSL+++ +K V ++
Sbjct: 85 AMSAEEALVYSYIEASGREGIWTKTIKA--KTNLHQHVVLKCLKSLESQRYVKSVKSVKF 142
Query: 75 KGKKHLMAVEFEPSKEISGGAWYSEGSLDTEFI 107
+K M +PS +++GG W+++ LD EFI
Sbjct: 143 PTRKIYMLYNLQPSIDVTGGPWFTDSELDVEFI 175
>gi|116181350|ref|XP_001220524.1| hypothetical protein CHGG_01303 [Chaetomium globosum CBS 148.51]
gi|88185600|gb|EAQ93068.1| hypothetical protein CHGG_01303 [Chaetomium globosum CBS 148.51]
Length = 430
Score = 63.9 bits (154), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 34/115 (29%), Positives = 56/115 (48%), Gaps = 2/115 (1%)
Query: 4 RKRPDSNAPSDSLTDHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNK 63
R R ++ + D ++Y +I GIW R +K +L N+ + +V IK L+ K
Sbjct: 81 RSREEAKKYTSLPNDEAVMVYSIIDEAGADGIWNRTIKNKL--NMHEAVVKNCIKFLETK 138
Query: 64 SLIKEVVNIHSKGKKHLMAVEFEPSKEISGGAWYSEGSLDTEFIKVVKSQCLKQI 118
I + N+ KK + PS+ +GG W++EG LDT FI ++ + I
Sbjct: 139 GYIASMKNVEHPNKKMYIKATLRPSERATGGPWFTEGELDTAFISELEGIVFEYI 193
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 19/43 (44%), Positives = 25/43 (58%)
Query: 191 GGEPKTGSLASIPCGVCPQINICKPDGVISPKTCVYYTKWLDF 233
G EP L PCG CP ++C+ G +SP CVY+ +WLD
Sbjct: 361 GAEPLASGLTEAPCGRCPVFDLCEEGGPVSPSNCVYFLQWLDL 403
>gi|346971954|gb|EGY15406.1| DNA-directed RNA polymerase III subunit RPC6 [Verticillium dahliae
VdLs.17]
Length = 393
Score = 63.5 bits (153), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 60/113 (53%), Gaps = 4/113 (3%)
Query: 1 MSKRKRPDSNAPSDSL--TDHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIK 58
++ R RP + A L TD +R++Y +I GIW++ + L +N D ++ +IK
Sbjct: 85 LAWRWRPKAEAAKYKLCTTDEQRMVYGMIDDAGGDGIWSKTIINRLSMN--DTVMKAAIK 142
Query: 59 SLQNKSLIKEVVNIHSKGKKHLMAVEFEPSKEISGGAWYSEGSLDTEFIKVVK 111
L K LI N+ KK + +PS+ +GG W+++ +LD FI+ ++
Sbjct: 143 QLHIKGLIVPFKNVEHPNKKMYIKASMQPSERATGGPWFTDQTLDEAFIEELQ 195
Score = 50.1 bits (118), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 31/116 (26%), Positives = 48/116 (41%), Gaps = 9/116 (7%)
Query: 125 TLEGISDSIKRSG-AFKVDLTKQQIEEIVRALVLDNQIMEVKSNGSGEFTNIPVGKVCYK 183
T+ I+ I ++G + L I+++V LV D + ++ G K
Sbjct: 275 TVRDIARFISQAGITTETTLGVDDIQKLVDVLVFDGLVEPIRVGGKHGLRVRRAAKQSLG 334
Query: 184 NVSKGG--------GGGEPKTGSLASIPCGVCPQINICKPDGVISPKTCVYYTKWL 231
N + G G EP PCG CP ++C+ G +S CVYY +WL
Sbjct: 335 NWAGQGADESGIERGAPEPYANGYTEAPCGRCPVFDLCEEGGPVSASNCVYYQRWL 390
>gi|50306581|ref|XP_453264.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|49642398|emb|CAH00360.1| KLLA0D04532p [Kluyveromyces lactis]
Length = 363
Score = 63.5 bits (153), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 45/174 (25%), Positives = 79/174 (45%), Gaps = 28/174 (16%)
Query: 16 LTDHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVVNIHSK 75
++ E L+Y I + GIWT+ +K + NL ++V K +KSL+++ +K V ++
Sbjct: 137 MSSDEALVYSYIEASGREGIWTKTIKA--KTNLHQHVVLKCLKSLESQRYVKSVKSVKYP 194
Query: 76 GKKHLMAVEFEPSKEISGGAWYSEGSLDTEFIKVV------------------------- 110
+K M +PS +++GG W+++ LD EFI +
Sbjct: 195 TRKIYMLYNLQPSIDVTGGPWFTDSELDVEFINSLLTIVWRFTAERTYPNGFNNFSDENG 254
Query: 111 KSQCLKQIIKLKVATLEGISDSIKRSGAFKVDLTKQQIEEIVRALVLDNQIMEV 164
+ +K T+E I + I SG LTK I + LV D+++ +V
Sbjct: 255 RDALYSSNVK-SYTTIEEILEFISESGISTEQLTKPDIRSLCEVLVYDDKLEKV 307
>gi|342883338|gb|EGU83852.1| hypothetical protein FOXB_05634 [Fusarium oxysporum Fo5176]
Length = 383
Score = 63.5 bits (153), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 51/92 (55%), Gaps = 2/92 (2%)
Query: 17 TDHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVVNIHSKG 76
TD + ++Y +I GIW++ +++ R+N+ D+++ ++K LQ K LI N+
Sbjct: 95 TDEQVMVYSLIDDSGGDGIWSQTLQK--RLNMHDSVLKNALKQLQTKGLIAPFKNVEHPN 152
Query: 77 KKHLMAVEFEPSKEISGGAWYSEGSLDTEFIK 108
KK + PS +GG WY++ + D FI+
Sbjct: 153 KKMFIKASIRPSDRATGGPWYTDQNFDEAFIE 184
Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 44/95 (46%), Gaps = 6/95 (6%)
Query: 143 LTKQQIEEIVRALVLDNQIMEVKSNGSGEFTNIPVGKVCYKNVSKGG------GGGEPKT 196
L++ ++++V LV DN I VK G + + K ++ + GG EP
Sbjct: 286 LSEHDVQKLVDVLVWDNLIESVKVAGKIGYRVSRIAKQSLESWAGRDDPTGREGGPEPIV 345
Query: 197 GSLASIPCGVCPQINICKPDGVISPKTCVYYTKWL 231
+ PCG CP IC+ G + P C Y+ +WL
Sbjct: 346 SAFTEAPCGRCPVFEICEEGGPVGPNNCEYFKRWL 380
>gi|367019296|ref|XP_003658933.1| hypothetical protein MYCTH_2295366 [Myceliophthora thermophila ATCC
42464]
gi|347006200|gb|AEO53688.1| hypothetical protein MYCTH_2295366 [Myceliophthora thermophila ATCC
42464]
Length = 425
Score = 63.5 bits (153), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 33/104 (31%), Positives = 53/104 (50%), Gaps = 2/104 (1%)
Query: 4 RKRPDSNAPSDSLTDHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNK 63
R R ++ + D ++Y +I GIW R +K +L N+ + +V IK L++K
Sbjct: 81 RSREEAKKYTTLPNDETVMVYSIIDEAGADGIWNRTIKNKL--NMHEAVVKNCIKFLESK 138
Query: 64 SLIKEVVNIHSKGKKHLMAVEFEPSKEISGGAWYSEGSLDTEFI 107
I + N+ KK + PS+ +GG W++EG LDT FI
Sbjct: 139 GYIASMKNVEHPNKKMYIKANLRPSERATGGPWFTEGELDTAFI 182
Score = 53.1 bits (126), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 26/43 (60%)
Query: 191 GGEPKTGSLASIPCGVCPQINICKPDGVISPKTCVYYTKWLDF 233
G EP + L PCG CP ++C+ G +SP CVY+ +WL+
Sbjct: 367 GAEPLSNGLTEAPCGRCPVFDLCEEGGPVSPSNCVYFLQWLEL 409
>gi|346325877|gb|EGX95473.1| DNA-directed RNA polymerase III subunit Rpc34 [Cordyceps militaris
CM01]
Length = 383
Score = 63.5 bits (153), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 28/95 (29%), Positives = 53/95 (55%), Gaps = 2/95 (2%)
Query: 17 TDHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVVNIHSKG 76
TD + L+Y ++ GIW++ +++ R+N+ D+++ ++K LQ K LI N+
Sbjct: 95 TDEQVLVYSLVDDAGGDGIWSQTLQK--RLNMHDSVLKNALKQLQTKGLIAPFKNVEHPN 152
Query: 77 KKHLMAVEFEPSKEISGGAWYSEGSLDTEFIKVVK 111
KK + PS +GG WY++ + D FI+ ++
Sbjct: 153 KKMYIKASIRPSDRATGGPWYTDQNFDDAFIEELQ 187
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/94 (28%), Positives = 43/94 (45%), Gaps = 8/94 (8%)
Query: 143 LTKQQIEEIVRALVLDNQIMEVKSNGSGEFTNIPVGKVCYKNVSKGGG-----GGEPKTG 197
L++ + +++ LV DN I V+ G + V +V ++ G G EP T
Sbjct: 288 LSEDDVRKLIDVLVWDNLIEPVRVAGKIGYR---VARVVKQSTEPWAGREEPGGPEPYTS 344
Query: 198 SLASIPCGVCPQINICKPDGVISPKTCVYYTKWL 231
PCG CP ++C+ G + P C Y+ WL
Sbjct: 345 PYTEAPCGRCPVFDLCEDGGPVGPSNCEYFKTWL 378
>gi|363750075|ref|XP_003645255.1| hypothetical protein Ecym_2738 [Eremothecium cymbalariae
DBVPG#7215]
gi|356888888|gb|AET38438.1| Hypothetical protein Ecym_2738 [Eremothecium cymbalariae
DBVPG#7215]
Length = 315
Score = 63.5 bits (153), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 54/92 (58%), Gaps = 2/92 (2%)
Query: 16 LTDHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVVNIHSK 75
++ E L+Y I + GIWT+ +K + NL ++V K +KSL+++ +K V ++
Sbjct: 86 MSSDESLVYSYIEASGREGIWTKTIKA--KTNLHQHVVLKCLKSLESQRYVKSVKSVKYP 143
Query: 76 GKKHLMAVEFEPSKEISGGAWYSEGSLDTEFI 107
+K M +PS +++GG W+++ LD EFI
Sbjct: 144 TRKIYMLYNLQPSIDVTGGPWFTDSELDVEFI 175
>gi|452845009|gb|EME46943.1| hypothetical protein DOTSEDRAFT_70771 [Dothistroma septosporum
NZE10]
Length = 378
Score = 63.2 bits (152), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 53/91 (58%), Gaps = 2/91 (2%)
Query: 16 LTDHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVVNIHSK 75
L E+ +Y+ I + G+W RD+K+ + N+ D+ + K+I L+ +LIK + NI SK
Sbjct: 87 LDRDEKAVYEEIEAAHTDGVWVRDIKK--KTNIGDSGMKKAISKLEGTNLIKSITNIRSK 144
Query: 76 GKKHLMAVEFEPSKEISGGAWYSEGSLDTEF 106
+K + +PS+ ++G ++Y G LD F
Sbjct: 145 AQKTYILSHLKPSESVTGNSFYDAGDLDESF 175
Score = 57.0 bits (136), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 29/91 (31%), Positives = 48/91 (52%), Gaps = 2/91 (2%)
Query: 143 LTKQQIEEIVRALVLDNQIMEVKSNGSGEFTNIPVGKVCYKNVSKGGGGGEPKTG-SLAS 201
LT Q+I+ + L D ++ +V + GE+ V + +K G + G +L
Sbjct: 286 LTVQEIQGCIDVLCWDEKLEKVPTR-DGEWGYRTVRGITFKPPGSQYGDFDDNAGTALTQ 344
Query: 202 IPCGVCPQINICKPDGVISPKTCVYYTKWLD 232
PCG CP ++C G ++P+ CVY+T+WLD
Sbjct: 345 APCGKCPVFDLCHEGGPVNPQECVYFTQWLD 375
>gi|403418720|emb|CCM05420.1| predicted protein [Fibroporia radiculosa]
Length = 494
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/103 (33%), Positives = 56/103 (54%), Gaps = 3/103 (2%)
Query: 16 LTDHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVVNIHSK 75
++ E ++ I+ + G RD + L ++ + +KSL K LIK V ++
Sbjct: 79 MSGEESMVLSHIQVSGNEGKAPRD---HAKTELHQTVIDRCLKSLVQKQLIKAVKSVKYP 135
Query: 76 GKKHLMAVEFEPSKEISGGAWYSEGSLDTEFIKVVKSQCLKQI 118
+K M +PS E++GG WY++ LDTEFIK++ S CL+ I
Sbjct: 136 TRKIYMLYHLDPSVEMTGGPWYTDNELDTEFIKLLCSACLRFI 178
Score = 45.4 bits (106), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 21/33 (63%)
Query: 199 LASIPCGVCPQINICKPDGVISPKTCVYYTKWL 231
L+ PC CP + CK + ++PK CVYY +WL
Sbjct: 454 LSQAPCTRCPTFDFCKSNAPVNPKECVYYGEWL 486
>gi|299749618|ref|XP_001836233.2| hypothetical protein CC1G_06318 [Coprinopsis cinerea okayama7#130]
gi|298408519|gb|EAU85605.2| hypothetical protein CC1G_06318 [Coprinopsis cinerea okayama7#130]
Length = 207
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 56/94 (59%), Gaps = 3/94 (3%)
Query: 27 IRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVV-NIHSKGKKHLMAVEF 85
IR D G+ +R ++ L + KS+K+L N+ LIK + ++H+ ++ + +
Sbjct: 91 IRVAGDQGMSSRKLRTS--TGLHKAAMEKSVKTLVNRKLIKVIKGSLHNTRQRTFILYDL 148
Query: 86 EPSKEISGGAWYSEGSLDTEFIKVVKSQCLKQII 119
EP EI+GG+WY++ +D EFI VKS CL+ I+
Sbjct: 149 EPGVEITGGSWYTDKKIDVEFIDQVKSFCLRYIV 182
>gi|303390946|ref|XP_003073703.1| DNA-directed RNA polymerase III subunit C34 [Encephalitozoon
intestinalis ATCC 50506]
gi|303302851|gb|ADM12343.1| DNA-directed RNA polymerase III subunit C34 [Encephalitozoon
intestinalis ATCC 50506]
Length = 235
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 45/177 (25%), Positives = 91/177 (51%), Gaps = 15/177 (8%)
Query: 15 SLTDHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVVNIHS 74
++ D+E +IY+++ G+W + +K + N+P N+V K +++++ K +IK V + +
Sbjct: 62 NVDDYELMIYNLVNQSGSEGVWLKVIKD--KTNMPHNLVGKVLRNMETKRIIKSVKCLKN 119
Query: 75 KGKKHLMAVEFEPSKEISGGAWYSEGSLDT-------EFIKVVKSQCLKQIIKL----KV 123
K +++ + PS+EI+GG W+ + +D E I + + L ++L +
Sbjct: 120 NRKVYVLYDQV-PSEEITGGMWFQDNDVDVECVTKILEIILLFLEKRLGDRLELPEYEEN 178
Query: 124 ATLEGISDSIKRSGAFKVDLTKQQIEEIVRALVLDNQIMEVKSNGSGEFTNI-PVGK 179
LE I + +K G V L + +E +V LV D ++ ++ S + + P GK
Sbjct: 179 PKLEEIMNYVKDLGILSVPLRLEDLETLVDILVFDGRVEKLHSGPIVRYRALRPYGK 235
>gi|396082216|gb|AFN83826.1| DNA-directed RNA polymerase III subunit C34 [Encephalitozoon
romaleae SJ-2008]
Length = 235
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 43/175 (24%), Positives = 88/175 (50%), Gaps = 14/175 (8%)
Query: 15 SLTDHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVVNIHS 74
++ D+E IY+++ + G+W + +K + N+P N++ K ++S+++K +IK V + +
Sbjct: 62 NIDDYELTIYNLVSQSGNEGVWLKVIKD--KTNMPHNLIGKVLRSMESKRIIKSVKCLKN 119
Query: 75 KGKKHLMAVEFEPSKEISGGAWYSEGSLDT-------EFIKVVKSQCLKQIIKL----KV 123
K +++ E PS+EI+GG W+ + +D E I++ + L ++L
Sbjct: 120 NRKVYVLYDEV-PSEEITGGIWFQDNDVDAECVTRVLEIIQLFLEKRLNGNLELPEYEDN 178
Query: 124 ATLEGISDSIKRSGAFKVDLTKQQIEEIVRALVLDNQIMEVKSNGSGEFTNIPVG 178
LE I +K V L + +E +V LV D ++ ++ S + + G
Sbjct: 179 PALEEIMSYVKNLNILSVPLRAEDLETLVDILVFDGKVEKLHSGSVTRYRALRQG 233
>gi|336275631|ref|XP_003352569.1| hypothetical protein SMAC_01403 [Sordaria macrospora k-hell]
gi|380094459|emb|CCC07838.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 411
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/104 (30%), Positives = 52/104 (50%), Gaps = 2/104 (1%)
Query: 4 RKRPDSNAPSDSLTDHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNK 63
R R D+ + ++Y ++ GIW R +K +L N+ D+++ + IK L+ K
Sbjct: 74 RSREDAKKYTSLPNSDLMMVYAMVDEAGADGIWNRTIKNKL--NMADSLMKQCIKYLEQK 131
Query: 64 SLIKEVVNIHSKGKKHLMAVEFEPSKEISGGAWYSEGSLDTEFI 107
I + N+ KK + PS +GG W++EG LDT FI
Sbjct: 132 GYIASMKNVEHPNKKMYIKANLRPSDRATGGPWFTEGELDTAFI 175
Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 40/123 (32%), Positives = 59/123 (47%), Gaps = 15/123 (12%)
Query: 125 TLEGISDSIKRSG-AFKVDLTKQQIEEIVRALVLDNQIMEVKSNGSGEF--TNIPV--GK 179
T+ I+ I +G L++ I+++V L D + VK NG + T IP +
Sbjct: 278 TVSDIAKFIHHAGITNNTTLSEADIQQLVDVLYYDGLVEPVKVNGRKGYRVTRIPKQDTR 337
Query: 180 VCYK-----NVSKGG-----GGGEPKTGSLASIPCGVCPQINICKPDGVISPKTCVYYTK 229
C + + SKGG G EP L PCG CP ++C+ G +SP CVY+ +
Sbjct: 338 TCNQRRLDHDPSKGGIITSFMGVEPSASGLMEAPCGRCPVYDMCEEGGPVSPSNCVYFRQ 397
Query: 230 WLD 232
WLD
Sbjct: 398 WLD 400
>gi|85112653|ref|XP_964380.1| hypothetical protein NCU00727 [Neurospora crassa OR74A]
gi|28926160|gb|EAA35144.1| conserved hypothetical protein [Neurospora crassa OR74A]
Length = 410
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 46/86 (53%), Gaps = 2/86 (2%)
Query: 22 LIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVVNIHSKGKKHLM 81
++Y ++ GIW R +K +L N+ D+++ IK L+ K I + N+ KK +
Sbjct: 92 MVYAMVDEAGADGIWNRTIKNKL--NMADSLMKHCIKYLEQKGYIASMKNVEHPNKKMYI 149
Query: 82 AVEFEPSKEISGGAWYSEGSLDTEFI 107
PS +GG W++EG LDT FI
Sbjct: 150 KANLRPSDRATGGPWFTEGELDTAFI 175
Score = 60.1 bits (144), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 39/123 (31%), Positives = 59/123 (47%), Gaps = 15/123 (12%)
Query: 125 TLEGISDSIKRSG-AFKVDLTKQQIEEIVRALVLDNQIMEVKSNGSGEF--TNIPVG--K 179
T+ I+ I +G L++ I+++V L D + VK NG + T IP +
Sbjct: 277 TVSDIAKFIHHAGITNNTTLSEADIQQLVDVLYYDGLVEPVKVNGRKGYRVTRIPKQDPR 336
Query: 180 VCYK-----NVSKGG-----GGGEPKTGSLASIPCGVCPQINICKPDGVISPKTCVYYTK 229
C + + +KGG G EP L PCG CP ++C+ G +SP CVY+ +
Sbjct: 337 TCNQRRLDHDPTKGGIVTSFMGVEPSASGLMEAPCGRCPVYDMCEEGGPVSPSNCVYFRR 396
Query: 230 WLD 232
WLD
Sbjct: 397 WLD 399
>gi|350295771|gb|EGZ76748.1| RNA polymerase Rpc34 [Neurospora tetrasperma FGSC 2509]
Length = 399
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 46/86 (53%), Gaps = 2/86 (2%)
Query: 22 LIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVVNIHSKGKKHLM 81
++Y ++ GIW R +K +L N+ D+++ IK L+ K I + N+ KK +
Sbjct: 92 MVYAMVDEAGADGIWNRTIKNKL--NMADSLMKHCIKYLEQKGYIASMKNVEHPNKKMYI 149
Query: 82 AVEFEPSKEISGGAWYSEGSLDTEFI 107
PS +GG W++EG LDT FI
Sbjct: 150 KANLRPSDRATGGPWFTEGELDTAFI 175
Score = 59.7 bits (143), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 39/123 (31%), Positives = 59/123 (47%), Gaps = 15/123 (12%)
Query: 125 TLEGISDSIKRSG-AFKVDLTKQQIEEIVRALVLDNQIMEVKSNGSGEF--TNIPVG--K 179
T+ I+ I +G L++ I+++V L D + VK NG + T IP +
Sbjct: 266 TVSDIAKFIHHAGITNNTTLSEADIQQLVDVLYYDGLVEPVKVNGRKGYRVTRIPKQDPR 325
Query: 180 VCYK-----NVSKGG-----GGGEPKTGSLASIPCGVCPQINICKPDGVISPKTCVYYTK 229
C + + +KGG G EP L PCG CP ++C+ G +SP CVY+ +
Sbjct: 326 TCNQRRLDHDPTKGGIVTSFMGVEPSASGLMEAPCGRCPVYDMCEEGGPVSPSNCVYFRR 385
Query: 230 WLD 232
WLD
Sbjct: 386 WLD 388
>gi|336463706|gb|EGO51946.1| hypothetical protein NEUTE1DRAFT_89784 [Neurospora tetrasperma FGSC
2508]
Length = 398
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 46/86 (53%), Gaps = 2/86 (2%)
Query: 22 LIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVVNIHSKGKKHLM 81
++Y ++ GIW R +K +L N+ D+++ IK L+ K I + N+ KK +
Sbjct: 92 MVYAMVDEAGADGIWNRTIKNKL--NMADSLMKHCIKYLEQKGYIASMKNVEHPNKKMYI 149
Query: 82 AVEFEPSKEISGGAWYSEGSLDTEFI 107
PS +GG W++EG LDT FI
Sbjct: 150 KANLRPSDRATGGPWFTEGELDTAFI 175
Score = 60.1 bits (144), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 39/123 (31%), Positives = 59/123 (47%), Gaps = 15/123 (12%)
Query: 125 TLEGISDSIKRSG-AFKVDLTKQQIEEIVRALVLDNQIMEVKSNGSGEF--TNIPVG--K 179
T+ I+ I +G L++ I+++V L D + VK NG + T IP +
Sbjct: 265 TVSDIAKFIHHAGITNNTTLSEADIQQLVDVLYYDGLVEPVKVNGRKGYRVTRIPKQDPR 324
Query: 180 VCYK-----NVSKGG-----GGGEPKTGSLASIPCGVCPQINICKPDGVISPKTCVYYTK 229
C + + +KGG G EP L PCG CP ++C+ G +SP CVY+ +
Sbjct: 325 TCNQRRLDHDPTKGGIVTSFMGVEPSASGLMEAPCGRCPVYDMCEEGGPVSPSNCVYFRR 384
Query: 230 WLD 232
WLD
Sbjct: 385 WLD 387
>gi|72387117|ref|XP_843983.1| hypothetical protein [Trypanosoma brucei brucei strain 927/4
GUTat10.1]
gi|62175983|gb|AAX70106.1| hypothetical protein, conserved [Trypanosoma brucei]
gi|70800515|gb|AAZ10424.1| hypothetical protein, conserved [Trypanosoma brucei brucei strain
927/4 GUTat10.1]
gi|261327110|emb|CBH10086.1| hypothetical protein, conserved [Trypanosoma brucei gambiense
DAL972]
Length = 355
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 58/293 (19%), Positives = 116/293 (39%), Gaps = 85/293 (29%)
Query: 14 DSLTDHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVVNIH 73
+S+ + L+ D IR+ + GI + LR LP + KS++ L ++ IKE
Sbjct: 72 NSMPEGPSLVLDAIRASGNSGIDQAALCSSLR--LPKGEIIKSLQMLLSQKRIKERRCFS 129
Query: 74 SKGKKHLMAVEFEPSKEISGGAWYS---EGSLDTEFIKVVKSQCLKQIIKLKVATLEGIS 130
++ K+ + EFEPS E++GG +Y +D F+ ++ + + + + +LE I+
Sbjct: 130 NRAKRIYLLFEFEPSDEVTGGTFYGGEDSREMDIGFVDEMRRRIMLLVAQRHSVSLEQIT 189
Query: 131 DSIK--RSGAFKVD-------------------------------------------LTK 145
++ R G+ D +++
Sbjct: 190 QHLQEARGGSSSADVNATAGGTVVMTTSPNGTVATLLGDSTGSCSGGGSVGAGCVKRISQ 249
Query: 146 QQIEEIVRALVLDNQI--------------MEVKSNGSGEFTNIPVGKVCYKNVSKGGGG 191
+ + +V+ LVLD + + N F+ +P + G G
Sbjct: 250 RDAQLLVQTLVLDGLLDCVTPSPAVPAQYQLATGRNVMRHFSAVP--------TAAGAGS 301
Query: 192 G---------EPKTGSLASI--PCGVCPQINICKP--DGVISPKTCVYYTKWL 231
G +P ++ ++ PC C Q+++C +GV++P+ C Y +W+
Sbjct: 302 GTKWVPAPVSQPSAWAMPAVGLPCMGCAQLHVCTASGNGVVNPRNCAYLKEWM 354
>gi|71403489|ref|XP_804539.1| hypothetical protein [Trypanosoma cruzi strain CL Brener]
gi|70867566|gb|EAN82688.1| hypothetical protein, conserved [Trypanosoma cruzi]
Length = 363
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 69/298 (23%), Positives = 118/298 (39%), Gaps = 79/298 (26%)
Query: 11 APSDSLTDHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVV 70
A S+S+ + L+ D IRS + GI + RV LP N V KS++ L + IKE
Sbjct: 67 ALSNSMPEGPSLVLDAIRSSGNSGIDQATLCS--RVRLPKNEVIKSLQLLVAQKRIKERR 124
Query: 71 NIHSKGKKHLMAVEFEPSKEISGGAWYS---EGSLDTEFIKVVKSQCLKQIIKLKVATLE 127
++ K+ + EFEPS EI+GG +Y +D F+ ++ + + + +LE
Sbjct: 125 CFSNRAKRIYLLFEFEPSDEITGGTFYGGEDSREMDVWFVDGMRRLIVALVAQRHSVSLE 184
Query: 128 GISDSIKR---SGAF------KVD--------------------------LTKQQIEEIV 152
I+ + SGA VD ++++ + +V
Sbjct: 185 QITQHLHESHGSGAAGEATLGGVDAVVVMTALPSGSVVTSANDNKGGNKRISQRDAQLLV 244
Query: 153 RALVLDNQI--------------MEVKSNGSGEFTNIPV----------------GKVCY 182
+ LVLD + + N FT P G+ +
Sbjct: 245 QTLVLDGVLDCVTPSVGAPPQYQLATGKNVLRHFTATPAAAGGWPSNGVTTPLEDGREGH 304
Query: 183 KNVSKGG-----GGGEPKTGSLASI--PCGVCPQINIC--KPDGVISPKTCVYYTKWL 231
+V GG +P ++ ++ PC CPQ+++C + V++P C Y +WL
Sbjct: 305 GDVFAGGLWNPAPVAQPSAWAMPAVGLPCLGCPQLSVCFASSNSVVNPCNCAYLNEWL 362
>gi|407410700|gb|EKF33038.1| hypothetical protein MOQ_003101 [Trypanosoma cruzi marinkellei]
Length = 363
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 67/298 (22%), Positives = 117/298 (39%), Gaps = 79/298 (26%)
Query: 11 APSDSLTDHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVV 70
A S+S+ + L+ D IRS + GI + ++R LP N V KS++ L + IKE
Sbjct: 67 ALSNSMPEGPSLVLDAIRSSGNSGIDQATLCSKVR--LPKNEVIKSLQLLVAQKRIKERR 124
Query: 71 NIHSKGKKHLMAVEFEPSKEISGGAWYS---EGSLDTEFIKVVKSQCLKQIIKLKVATLE 127
++ K+ + EFEPS EI+GG +Y +D F+ ++ + + + +LE
Sbjct: 125 CFSNRAKRIYLLFEFEPSDEITGGTFYGGEDSREMDVWFVDGMRRLIVALVAQRHSVSLE 184
Query: 128 GISDSIKRS----GAFKVDL-------------------------------TKQQIEEIV 152
I+ + S A + L +++ + +V
Sbjct: 185 QITQHLHESHGGTAAGEATLGGGDAVVVMTALPSGSVVTSANDNKGGSKRISQRDAQLLV 244
Query: 153 RALVLDNQI--------------MEVKSNGSGEFTNIPV----------------GKVCY 182
+ LVLD + + N FT P G+ +
Sbjct: 245 QTLVLDGVLDCVTPSVGAPPQYQLATGKNVLRHFTATPAAVGGWPLNGVTTPLEDGRELH 304
Query: 183 KNVSKGG-----GGGEPKTGSLASI--PCGVCPQINICKPDG--VISPKTCVYYTKWL 231
+V GG +P ++ ++ PC CPQ+++C G V++P C Y +WL
Sbjct: 305 GDVFAGGLWNPAPVAQPSAWAMPAVGLPCLGCPQLSVCFASGNSVVNPCNCAYLNEWL 362
>gi|300123760|emb|CBK25032.2| unnamed protein product [Blastocystis hominis]
Length = 170
Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 32/99 (32%), Positives = 56/99 (56%), Gaps = 2/99 (2%)
Query: 14 DSLTDHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVVNIH 73
+ L + + ++Y I + D GIW RD+K ++ +L + + ++I+ + + LIK +I
Sbjct: 56 EKLGEQDMIVYQCIEAAGDQGIWIRDIK--VQTSLHASAINRAIEKMVKRKLIKSFKSIA 113
Query: 74 SKGKKHLMAVEFEPSKEISGGAWYSEGSLDTEFIKVVKS 112
SK K + + E K+I+GG WY E D EFI V+ +
Sbjct: 114 SKMKIMYILYDKELPKDITGGPWYVEQEFDLEFINVMST 152
>gi|389631391|ref|XP_003713348.1| DNA-directed RNA polymerase III subunit RPC6 [Magnaporthe oryzae
70-15]
gi|351645681|gb|EHA53541.1| DNA-directed RNA polymerase III subunit RPC6 [Magnaporthe oryzae
70-15]
gi|440474129|gb|ELQ42893.1| DNA-directed RNA polymerase III subunit RPC6 [Magnaporthe oryzae
Y34]
gi|440487009|gb|ELQ66821.1| DNA-directed RNA polymerase III subunit RPC6 [Magnaporthe oryzae
P131]
Length = 415
Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 35/129 (27%), Positives = 66/129 (51%), Gaps = 3/129 (2%)
Query: 4 RKRPDSNAPSDSLTDHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNK 63
R R D+ + + L+Y +I GIW+R + R R+ + D + +++K L++K
Sbjct: 86 RTREDAAKYATLPSSEAMLVYTLIDEAGADGIWSRAILR--RLGMHDATLKQALKQLESK 143
Query: 64 SLIKEVVNIHSKGKKHLMAVEFEPSKEISGGAWYSEGSLDTEFIKVVKSQCLKQIIKLKV 123
I E+ ++ KK + PS++ +GG WY++ +LD FI ++ + + I+K +
Sbjct: 144 GFISEMKSVEHPNKKMYIKANLRPSEKATGGPWYNDSTLDEAFIDELE-RVVFDIVKARS 202
Query: 124 ATLEGISDS 132
SDS
Sbjct: 203 TYRSHASDS 211
Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 18/41 (43%), Positives = 24/41 (58%)
Query: 191 GGEPKTGSLASIPCGVCPQINICKPDGVISPKTCVYYTKWL 231
G + L PCG CP +C+ G +SP+TC+YY KWL
Sbjct: 357 GPPARENGLTEAPCGRCPVFELCEEGGPVSPRTCIYYNKWL 397
>gi|406865342|gb|EKD18384.1| DNA-directed RNA polymerase III subunit RPC6 [Marssonina brunnea f.
sp. 'multigermtubi' MB_m1]
Length = 358
Score = 59.7 bits (143), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 31/103 (30%), Positives = 53/103 (51%), Gaps = 2/103 (1%)
Query: 16 LTDHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVVNIHSK 75
LT + ++Y I G W++ +K R NL D++ +IK L+ ++LI E+ ++
Sbjct: 91 LTAEQEIVYMQIDEAAADGAWSKIIKN--RSNLHDSLFQSAIKHLRARNLITEMKSVEHP 148
Query: 76 GKKHLMAVEFEPSKEISGGAWYSEGSLDTEFIKVVKSQCLKQI 118
+K + PS+ +GG WY++ LD EFI V + I
Sbjct: 149 TRKMFILSSLRPSERTTGGPWYTDSELDEEFINTVMRVLFEHI 191
Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 30/107 (28%), Positives = 49/107 (45%), Gaps = 10/107 (9%)
Query: 125 TLEGISDSIKRSGAFKVDLTKQQIEEIVRALVLDNQIMEVKSNGSGEFTNIPVGKVCYKN 184
TL ++ ++ AF L I++++ + D++I V S G G V YK
Sbjct: 260 TLAELTLWVENMNAFSQTLAANDIQQLLDIMCFDDRITRVIS-GEG---------VSYKA 309
Query: 185 VSKGGGGGEPKTGSLASIPCGVCPQINICKPDGVISPKTCVYYTKWL 231
+ + E T L +PCG CP ++C+ G + P C Y+ WL
Sbjct: 310 LRRSLRDEEECTSRLTEVPCGRCPVFDLCEEGGPVGPSNCEYFNDWL 356
>gi|402083524|gb|EJT78542.1| DNA-directed RNA polymerase III subunit RPC6 [Gaeumannomyces
graminis var. tritici R3-111a-1]
Length = 413
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 50/86 (58%), Gaps = 2/86 (2%)
Query: 22 LIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVVNIHSKGKKHLM 81
L+Y +I GIW+R + R R+ + D + +++K L++K I E+ ++ KK +
Sbjct: 103 LVYSIIDEAGADGIWSRAVLR--RLGMHDATLKQALKQLESKGFISEMKSVEHPNKKMYI 160
Query: 82 AVEFEPSKEISGGAWYSEGSLDTEFI 107
+PS++ +GG WY++ +LD FI
Sbjct: 161 KANLKPSEKATGGPWYNDSTLDEAFI 186
Score = 50.1 bits (118), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 17/41 (41%), Positives = 24/41 (58%)
Query: 191 GGEPKTGSLASIPCGVCPQINICKPDGVISPKTCVYYTKWL 231
G + L PCG CP +C+ G +SP+TC+YY +WL
Sbjct: 360 GPPARENGLTEAPCGNCPVFELCEEGGPVSPRTCIYYNRWL 400
>gi|401827607|ref|XP_003888096.1| DNA-directed RNA polymerase III subunit C34 [Encephalitozoon hellem
ATCC 50504]
gi|392999296|gb|AFM99115.1| DNA-directed RNA polymerase III subunit C34 [Encephalitozoon hellem
ATCC 50504]
Length = 236
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 41/175 (23%), Positives = 91/175 (52%), Gaps = 26/175 (14%)
Query: 15 SLTDHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVVNIHS 74
++ ++E IY+++ + G+W + +K + N+P N++ K ++++++K +IK V + +
Sbjct: 63 NVDNYELTIYNLVSQSGNEGVWLKVIKD--KTNMPHNLIGKVLRTMESKRIIKSVKCLKN 120
Query: 75 KGKKHLMAVEFEPSKEISGGAWYSEGSLDTE-FIKVVKSQCLKQIIKLKVA--------- 124
K +++ + PS+EI+GG W+ + +D E I+V+ +II+L +
Sbjct: 121 NRKVYVLYDQV-PSEEITGGMWFQDNDVDAECVIRVL------EIIQLFLQKSLSGKPGL 173
Query: 125 -------TLEGISDSIKRSGAFKVDLTKQQIEEIVRALVLDNQIMEVKSNGSGEF 172
TLE I + +K V L + ++ +V LV D ++ ++ S + +
Sbjct: 174 PEYEDNPTLEEIMNYVKNLNILSVPLRIEDLKTLVDILVFDGKVEKLHSGATTRY 228
>gi|19074630|ref|NP_586136.1| DNA-DIRECTED RNA POLYMERASE III 34kDa SUBUNIT [Encephalitozoon
cuniculi GB-M1]
gi|19069272|emb|CAD25740.1| DNA-DIRECTED RNA POLYMERASE III 34kDa SUBUNIT [Encephalitozoon
cuniculi GB-M1]
gi|449330226|gb|AGE96487.1| DNA-directed RNA polymerase III 34kDa subunit [Encephalitozoon
cuniculi]
Length = 236
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 38/164 (23%), Positives = 85/164 (51%), Gaps = 16/164 (9%)
Query: 15 SLTDHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVVNIHS 74
++ D+E IY+++ G+W + +K + N+P N+V K ++S+++K +IK V + +
Sbjct: 63 NVDDYELTIYNLVSQSGGEGVWLKVIKD--KTNMPHNLVGKVLRSMESKRIIKSVKCLKN 120
Query: 75 KGKKHLMAVEFEPSKEISGGAWYSEGSLDTEFIKVVKSQCLKQIIKLKVA---------- 124
K +++ + PS+EI+GG W+ + +D E + + + ++ ++ +A
Sbjct: 121 NRKVYVLYDQV-PSEEITGGTWFHDNDVDVECVARI-LEIIELFLEKNLAGREELPKYED 178
Query: 125 --TLEGISDSIKRSGAFKVDLTKQQIEEIVRALVLDNQIMEVKS 166
TLE I + ++ + L +E + LV D ++ ++ S
Sbjct: 179 NPTLEDIMNYVRNVNILSIPLRLDDLETLADILVFDGKVEKLHS 222
>gi|453086184|gb|EMF14226.1| RNA polymerase Rpc34 [Mycosphaerella populorum SO2202]
Length = 396
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/102 (30%), Positives = 57/102 (55%), Gaps = 2/102 (1%)
Query: 6 RPDSNAPS-DSLTDHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKS 64
RP A + +L ER++Y+VI + GIW + +K +L + +V K K+L+++
Sbjct: 83 RPREAAKAIKALDKDERMVYEVIEASHTTGIWLKSIKNKLN-GIAQPVVAKITKTLESQR 141
Query: 65 LIKEVVNIHSKGKKHLMAVEFEPSKEISGGAWYSEGSLDTEF 106
LIK V +I + ++ M PS++++G +++ G LD F
Sbjct: 142 LIKPVKSIKAPAQRVFMLFHLVPSEDVTGNSFFDAGDLDESF 183
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/103 (29%), Positives = 54/103 (52%), Gaps = 3/103 (2%)
Query: 130 SDSIKRSGAFKVDLTKQQIEEIVRALVLDNQIMEVKSNGSGEFTNIPVGKVCYKNVSKGG 189
SD+IK + + LT Q+++ + LV D+++ +V + G + V ++ +
Sbjct: 294 SDAIKATKS--ASLTVQEVQGCLDVLVWDDKLEKVWNVEDGNWGYRTRRGVTFRQPGQTF 351
Query: 190 GGGEPKTGS-LASIPCGVCPQINICKPDGVISPKTCVYYTKWL 231
E G+ L PCG CP ++C+ G ++P+TCVY+ WL
Sbjct: 352 DIEEDAVGTGLTQAPCGRCPVFDVCRDGGPVNPQTCVYFDAWL 394
>gi|440297421|gb|ELP90115.1| hypothetical protein EIN_405290 [Entamoeba invadens IP1]
Length = 169
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 35/140 (25%), Positives = 67/140 (47%), Gaps = 11/140 (7%)
Query: 96 WYSEGSLDTEFIKVVKSQCLKQIIKLKVATLEGISDSIKRSGAFKVDLTKQQIEEIVRAL 155
+Y++ LD +F+ + C ++ A++ + + ++ SG VD+ K++I ++ L
Sbjct: 26 FYTKTGLDGDFVDTISDHCYMFLLNKGGASVNDVYEYVRESGISTVDIKKEEILSLLNRL 85
Query: 156 VLDNQIMEVKSNGSGEFTNI-PVGKVCYKNVSKGGGGGEPKTGSLASIPCGVCPQINICK 214
V NGS E + + Y + +T L+ +PCG CP ++IC
Sbjct: 86 VF---------NGSAECSVVKSTNGSLYTSKIFKPSKMVAQTNPLSLVPCGNCPFLSICS 136
Query: 215 PDGV-ISPKTCVYYTKWLDF 233
P V +P+ C Y+++ L F
Sbjct: 137 PQNVSCNPRNCKYFSELLTF 156
>gi|300708286|ref|XP_002996325.1| hypothetical protein NCER_100585 [Nosema ceranae BRL01]
gi|239605618|gb|EEQ82654.1| hypothetical protein NCER_100585 [Nosema ceranae BRL01]
Length = 233
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/100 (29%), Positives = 60/100 (60%), Gaps = 3/100 (3%)
Query: 11 APSDSLTDHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVV 70
A ++ D+E LI ++I G+W ++++ + N+P N++ K + S++N+ +IK +
Sbjct: 58 AVVNASDDYETLIINLIAQSGTEGMWIKEIRE--KTNMPQNLILKILSSMENRRVIKSIK 115
Query: 71 NIHSKGKKHLMAVEFEPSKEISGGAWYSEGSLDTEFIKVV 110
NI + K +++ + PS I+GG W+++ +D E +K V
Sbjct: 116 NIKNNRKVYVLY-DIIPSDAITGGFWFNDNEVDVECVKNV 154
>gi|429961896|gb|ELA41440.1| hypothetical protein VICG_01545 [Vittaforma corneae ATCC 50505]
Length = 236
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 37/162 (22%), Positives = 80/162 (49%), Gaps = 13/162 (8%)
Query: 17 TDHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVVNIHSKG 76
+ +E L+ ++I G+W +D+K + N+P N++ K ++ L+ IK + ++ +
Sbjct: 64 SSYEALVLNLIAQSGSSGLWLKDIKN--KTNIPHNLILKILRVLEETRRIKSIKSVKNNR 121
Query: 77 KKHLMAVEFEPSKEISGGAWYSEGSLDTEFIKVVKSQCLKQIIKLK----------VATL 126
K +++ + +P ++ISGG W+S +D F+ + + + K + + L
Sbjct: 122 KIYVL-FDIKPDEDISGGVWFSNNDVDLVFVNKLMEIIYQYVRKPEGPFVLNKVDNLVKL 180
Query: 127 EGISDSIKRSGAFKVDLTKQQIEEIVRALVLDNQIMEVKSNG 168
+ + I SG +V LT + ++ LV D +I ++ G
Sbjct: 181 RMVREFISTSGISEVVLTVDDVNTLIDCLVYDGKIERIEVGG 222
>gi|429966147|gb|ELA48144.1| hypothetical protein VCUG_00382 [Vavraia culicis 'floridensis']
Length = 229
Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 39/164 (23%), Positives = 80/164 (48%), Gaps = 21/164 (12%)
Query: 18 DHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVVNIHSKGK 77
D ER + + ++ + G RD++ L LP N+V+K ++ +Q+ ++K KG+
Sbjct: 58 DDERSVLEQLKKATNQGCTIRDIR--LATKLPQNLVSKILRKMQDMKVVKAF-----KGQ 110
Query: 78 KH----LMAVEFEPSKEISGGAWYSEGSLDTEFIKVVKSQCLKQIIKLKVA--------- 124
K+ M E P E++GG W++ G +D EF+ + ++ + I+ K
Sbjct: 111 KNRQNIFMIFEETPDDEVTGGIWFNNGDVDAEFVNQL-TKLIYTFIRNKTRELIPYELNP 169
Query: 125 TLEGISDSIKRSGAFKVDLTKQQIEEIVRALVLDNQIMEVKSNG 168
T+E I I S + ++ +++I+ +V ++E++ G
Sbjct: 170 TIEDIKSFITESNVLSIHISTADLKKIINVMVYGQILLELQDGG 213
>gi|449303850|gb|EMC99857.1| hypothetical protein BAUCODRAFT_63420 [Baudoinia compniacensis UAMH
10762]
Length = 377
Score = 56.6 bits (135), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 26/98 (26%), Positives = 53/98 (54%), Gaps = 2/98 (2%)
Query: 15 SLTDHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVVNIHS 74
+L +R++Y+ + GIW RD+++ R + V K++ L+N L+K + N+ S
Sbjct: 72 ALGHPDRMLYEYVEDAHRKGIWLRDLRK--RSGIQGQSVDKAMNRLENARLVKVIRNVKS 129
Query: 75 KGKKHLMAVEFEPSKEISGGAWYSEGSLDTEFIKVVKS 112
+K + P+ +++GG+++ G LD I +K+
Sbjct: 130 PMQKTYLLSHLMPTDDVTGGSFFDSGDLDESLIDEIKN 167
Score = 41.6 bits (96), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 14/38 (36%), Positives = 22/38 (57%)
Query: 195 KTGSLASIPCGVCPQINICKPDGVISPKTCVYYTKWLD 232
K L PCG CP ++C+ G I+ +CVY+ W++
Sbjct: 337 KGNGLTEAPCGRCPVFDLCEEGGPINASSCVYWAAWIE 374
>gi|440491159|gb|ELQ73828.1| RNA polymerase III, subunit C34 [Trachipleistophora hominis]
Length = 235
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 41/160 (25%), Positives = 80/160 (50%), Gaps = 19/160 (11%)
Query: 18 DHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVVNIHSKGK 77
D E+ + DV++ + G RD++ L L N++TK ++ +Q+ ++K V KG+
Sbjct: 64 DDEKSVLDVLKKSKGQGCTIRDIR--LTTKLSQNLITKILRKMQDMKMVKAV-----KGQ 116
Query: 78 KH----LMAVEFEPSKEISGGAWYSEGSLDTEF----IKV----VKSQCLKQIIKLKVAT 125
K+ M E P E++GG W++ G +D EF IK+ V+++ I T
Sbjct: 117 KNRQNIFMVFEETPDDEVTGGIWFNNGDVDVEFTNQLIKLIYTFVRNKTRDLISYDHNPT 176
Query: 126 LEGISDSIKRSGAFKVDLTKQQIEEIVRALVLDNQIMEVK 165
+E I I S ++++ + +I+ +V ++E++
Sbjct: 177 IEDIKSFITESNVLSINISMADLRKIIDVMVYGQILLELR 216
>gi|387592799|gb|EIJ87823.1| hypothetical protein NEQG_01895 [Nematocida parisii ERTm3]
gi|387595420|gb|EIJ93044.1| hypothetical protein NEPG_02000 [Nematocida parisii ERTm1]
Length = 230
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/109 (32%), Positives = 61/109 (55%), Gaps = 4/109 (3%)
Query: 12 PSDSLTDHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVVN 71
P T E++IY +I+ GIW +D++ + L N+VTK +K+L+ + LIK V +
Sbjct: 62 PQSFSTPEEKIIYLLIKEVGVEGIWIKDIRT--KSGLHQNLVTKLLKTLEQRLLIKSVKS 119
Query: 72 IHSKGKKHLMAVEFEPSKEISGGAWYS-EGSLDTEFIKVVKSQCLKQII 119
I + +K M + PS ++ G W++ E LDT F+ +K+ + I+
Sbjct: 120 I-KQNRKVYMLYDAIPSDDLGDGPWFTQEAELDTGFVDAIKNVAYEWIL 167
>gi|253745965|gb|EET01547.1| Hypothetical protein GL50581_1196 [Giardia intestinalis ATCC 50581]
Length = 233
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 43/185 (23%), Positives = 85/185 (45%), Gaps = 20/185 (10%)
Query: 53 VTKSIKSLQNKSLIKEVVNIHSKGKKHLMAVEFEPSKEISGGAWYSEGSLDTEFIKVVKS 112
V S+K L+ + LI V++ K ++ + E + + + + S D E K+ S
Sbjct: 61 VADSLKKLETRQLI---VSVQEKQARYYLPKELSRASDATSSSLAGRFSED-ELAKL--S 114
Query: 113 QCLKQIIKLKVATLEGISDSIKRS--GAFKVDLTKQQIEEIVRALVLDNQIMEVKSNGSG 170
+ + I + I +++++ GA LT +++ I+ AL+ D +ME+ +N
Sbjct: 115 ALVYKAIGRAPVVFDDICKTVQKNEIGA----LTPEEVRVIIGALMADGAVMEMVTNMGT 170
Query: 171 EFTNIPVGKVCY---KNVSKGGGGGEPKTGSLASIPCGVCPQINICKPDGVISPKTCVYY 227
+ ++ Y + G G +++ PC CP + +C P ISP+ C+Y
Sbjct: 171 AYRSVSSDFYSYCPSYDYVPGHQGMH-----VSATPCCKCPHLYVCGPGSAISPEQCIYI 225
Query: 228 TKWLD 232
+WL+
Sbjct: 226 NQWLN 230
>gi|429856918|gb|ELA31807.1| DNA-directed RNA polymerase iii subunit rpc6 [Colletotrichum
gloeosporioides Nara gc5]
Length = 389
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 43/82 (52%)
Query: 37 TRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVVNIHSKGKKHLMAVEFEPSKEISGGAW 96
R K + R+N+ D+++ ++K LQ K LI N+ K+ + PS+ +GG W
Sbjct: 107 ARPKKTQHRLNMHDSVLKTALKQLQGKGLIAPFKNVEHPNKRMFIKASMRPSERATGGPW 166
Query: 97 YSEGSLDTEFIKVVKSQCLKQI 118
+++ + D FI+ ++ QI
Sbjct: 167 FTDSAFDEAFIEDLQRVIFDQI 188
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/101 (26%), Positives = 45/101 (44%), Gaps = 18/101 (17%)
Query: 143 LTKQQIEEIVRALVLDNQIMEVKSNGSGEFTNIPVGKVC---------YKNVSKGG---G 190
L ++ +++++ LV D + V+ G + +VC + +GG G
Sbjct: 292 LGEEDVQKLIDVLVFDGLVEPVRVAGRTGY------RVCRAPRQSLQGWAGRQEGGADEG 345
Query: 191 GGEPKTGSLASIPCGVCPQINICKPDGVISPKTCVYYTKWL 231
G EP PCG CP +C+ G +S CVY+ +WL
Sbjct: 346 GPEPHVNGFTEAPCGRCPVFELCEEGGPVSASNCVYFQRWL 386
>gi|426238798|ref|XP_004013331.1| PREDICTED: DNA-directed RNA polymerase III subunit RPC6-like [Ovis
aries]
Length = 185
Score = 53.5 bits (127), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 50/98 (51%), Gaps = 6/98 (6%)
Query: 137 GAFKVDLTKQQIEEIVRALVLDNQI-MEVKSNGSGEFTNIPVGKVCYKNVSKGGGGGEPK 195
G KV+L+ + IE I+ L+ D ++ M + + G ++ Y+ VS P
Sbjct: 93 GISKVELSMEDIETILNTLIYDGKVEMTIIAAKEGTVGSVDGHMKLYRAVSPII----PP 148
Query: 196 TGSLASIPCGVCPQINICKPDGVISPKTCVYYTKWLDF 233
TG L P G+CP + C G ISP C+Y T+WL+F
Sbjct: 149 TG-LVRAPRGLCPVFDDCHEGGEISPSNCIYMTEWLEF 185
>gi|71652514|ref|XP_814912.1| hypothetical protein [Trypanosoma cruzi strain CL Brener]
gi|70879926|gb|EAN93061.1| hypothetical protein, conserved [Trypanosoma cruzi]
Length = 363
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/129 (28%), Positives = 65/129 (50%), Gaps = 5/129 (3%)
Query: 11 APSDSLTDHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVV 70
A S+S+ + L+ D IRS + GI + ++R LP + V KS++ L + IKE
Sbjct: 67 ALSNSMPEGPSLVLDAIRSSGNSGIDQATLCSKVR--LPKSEVIKSLQLLVAQKRIKERR 124
Query: 71 NIHSKGKKHLMAVEFEPSKEISGGAWYS---EGSLDTEFIKVVKSQCLKQIIKLKVATLE 127
++ K+ + EFEPS EI+GG +Y +D F+ ++ + + + +LE
Sbjct: 125 CFSNRAKRIYLLFEFEPSDEITGGTFYGGEDSREMDVWFVDGMRRLIVALVAQRHSVSLE 184
Query: 128 GISDSIKRS 136
I+ + S
Sbjct: 185 QITQHLHES 193
>gi|407850126|gb|EKG04637.1| hypothetical protein TCSYLVIO_004301 [Trypanosoma cruzi]
Length = 363
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/129 (28%), Positives = 65/129 (50%), Gaps = 5/129 (3%)
Query: 11 APSDSLTDHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVV 70
A S+S+ + L+ D IRS + GI + ++R LP + V KS++ L + IKE
Sbjct: 67 ALSNSMPEGPSLVLDAIRSSGNSGIDQATLCSKVR--LPKSEVIKSLQLLVAQKRIKERR 124
Query: 71 NIHSKGKKHLMAVEFEPSKEISGGAWYS---EGSLDTEFIKVVKSQCLKQIIKLKVATLE 127
++ K+ + EFEPS EI+GG +Y +D F+ ++ + + + +LE
Sbjct: 125 CFSNRAKRIYLLFEFEPSDEITGGTFYGGEDSREMDVWFVDGMRRLIVALVAQRHSVSLE 184
Query: 128 GISDSIKRS 136
I+ + S
Sbjct: 185 QITQHLHES 193
>gi|84998828|ref|XP_954135.1| DNA-directed RNA polymerase III (-specific) subunit (RPC34 )
[Theileria annulata]
gi|65305133|emb|CAI73458.1| DNA-directed RNA polymerase III (-specific) subunit (RPC34
homologue), putative [Theileria annulata]
Length = 476
Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 45/179 (25%), Positives = 90/179 (50%), Gaps = 20/179 (11%)
Query: 16 LTDHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSL-QNKSLIKEVVNIHS 74
L D + I+ I + D G+WT D+++ L +++ N V + +K L ++ LI+ + +++
Sbjct: 87 LKDIDYKIFCTIETAGDKGLWTADIRKILGLHI--NQVQRGVKYLYESNRLIRPITDVNY 144
Query: 75 KGKKHLMAVEFEPSKEISGGAWYSEGSLDTEFIKVVKSQC-----------LKQIIKLKV 123
K +K + EPS +I+GG++Y+ G + ++ ++ Q L+QII
Sbjct: 145 KSRKLFILSSLEPSTQITGGSFYNNGEFNELLVEKLQEQICSFLSNNQGSNLQQIITFLK 204
Query: 124 AT--LEGISDSI--KRSGAFKVDLTKQQIEEIVRALVLDNQIMEVKSNGSGEFTNIPVG 178
T + G+ I R + +L + + I++ L+L+N+I S + +F I G
Sbjct: 205 ETNIIRGLYIHIYWNRDKILQ-ELLETDVNRIIKLLILENKIFNA-SLQNNQFIYIWCG 261
>gi|452983857|gb|EME83615.1| hypothetical protein MYCFIDRAFT_203692 [Pseudocercospora fijiensis
CIRAD86]
Length = 327
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 32/112 (28%), Positives = 53/112 (47%), Gaps = 6/112 (5%)
Query: 125 TLEGISDSIKRSGAFK----VDLTKQQIEEIVRALVLDNQIMEVKSNGSGEFTNIPVGKV 180
T E I + + S A K LT +I+ + L D ++ ++ NG G + V V
Sbjct: 214 TAEEIHNFLVTSNAIKPTKAASLTVHEIQGCIDVLCWDEKLEKI-MNGEGTWGYRTVRGV 272
Query: 181 CYKNVSKGGGGGEPKTGS-LASIPCGVCPQINICKPDGVISPKTCVYYTKWL 231
+K E G+ L PCG CP +++C G ++P+ C+Y+ +WL
Sbjct: 273 TFKPPGANYDDYEEVVGTGLTQAPCGRCPVLDLCHEGGPVNPQDCIYFEQWL 324
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/102 (25%), Positives = 51/102 (50%), Gaps = 2/102 (1%)
Query: 6 RPDSNAPSDSLTDH-ERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKS 64
RP A + D E+ +Y ++ D GIW +++K++ + V K++ ++ +
Sbjct: 27 RPQDAARQITALDRDEKAVYVIVEEAHDRGIWVKEIKKKA-TGVAQQTVQKAVNKMEKAN 85
Query: 65 LIKEVVNIHSKGKKHLMAVEFEPSKEISGGAWYSEGSLDTEF 106
LIK V ++ +K M PS+++ G +++ G LD F
Sbjct: 86 LIKSVKSVRHPTQKTYMLSHLVPSEDVIGNSFFDAGDLDESF 127
>gi|378754947|gb|EHY64975.1| hypothetical protein NERG_02031 [Nematocida sp. 1 ERTm2]
Length = 231
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 41/155 (26%), Positives = 81/155 (52%), Gaps = 13/155 (8%)
Query: 20 ERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVVNIHSKGKKH 79
E++IY +I+ GIW +D++ + L N+VTK +K+L+ + LIK V +I + +K
Sbjct: 70 EKIIYLLIKESGVDGIWIKDIRS--KSGLHQNLVTKILKTLEQRVLIKAVKSI-KQNRKV 126
Query: 80 LMAVEFEPSKEISGGAWYSE-GSLDTEFIKVVKSQCLKQIIKL------KVATLEGISDS 132
M + PS ++ G W+++ LD F++ +K + I+ L GI +
Sbjct: 127 YMLYDAVPSDDLGDGPWFTQDAELDVGFVEAIKGVAHEWIVNSIGKDMPAYEDLPGIKEV 186
Query: 133 ---IKRSGAFKVDLTKQQIEEIVRALVLDNQIMEV 164
+ R+ V L+ + ++ I+ LV + +I+++
Sbjct: 187 HSFLMRAEISSVHLSLEDVKRILDILVYERKIIQL 221
>gi|308158898|gb|EFO61458.1| RNA polymerase III subunit C34 [Giardia lamblia P15]
Length = 233
Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 44/183 (24%), Positives = 79/183 (43%), Gaps = 18/183 (9%)
Query: 53 VTKSIKSLQNKSLIKEVVNIHSKGKKHLMAVEFEPSKEISGGAWYSEGSLDTEFIKVVKS 112
V S+K L+ + LI V++ K ++ E + + + S D E K+ S
Sbjct: 61 VADSLKKLETRQLI---VSVQEKQARYYFPKELSRASDAVSSSLAGRFS-DDELSKL--S 114
Query: 113 QCLKQIIKLKVATLEGISDSIKRSGAFKVDLTKQQIEEIVRALVLDNQIMEVKSNGSGEF 172
+ + + + I +I+++ LT +++ IV AL+ D ++E+ +N +
Sbjct: 115 ALVYKAVGRAPVVFDDICKAIQKNEIGT--LTPEEVRVIVGALIADGAVVEMLTNMGPAY 172
Query: 173 --TNIPVGKVC--YKNVSKGGGGGEPKTGSLASIPCGVCPQINICKPDGVISPKTCVYYT 228
N C Y V G +A+ PC CP + +C P ISP+ C+Y
Sbjct: 173 RSVNSDFYSYCPSYDQVPGHQGM------HVAATPCCKCPHLYVCGPGSAISPEQCIYIN 226
Query: 229 KWL 231
+WL
Sbjct: 227 QWL 229
>gi|159109521|ref|XP_001705025.1| RNA polymerase III subunit C34 [Giardia lamblia ATCC 50803]
gi|159114554|ref|XP_001707501.1| Hypothetical protein GL50803_121061 [Giardia lamblia ATCC 50803]
gi|157433102|gb|EDO77351.1| RNA polymerase III subunit C34 [Giardia lamblia ATCC 50803]
gi|157435607|gb|EDO79827.1| hypothetical protein GL50803_121061 [Giardia lamblia ATCC 50803]
Length = 233
Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 44/183 (24%), Positives = 79/183 (43%), Gaps = 18/183 (9%)
Query: 53 VTKSIKSLQNKSLIKEVVNIHSKGKKHLMAVEFEPSKEISGGAWYSEGSLDTEFIKVVKS 112
V S+K L+ + LI V++ K ++ E + + + S D E K+ S
Sbjct: 61 VADSLKKLETRQLI---VSVQEKQARYYFPKELSRASDAVSSSLAGRFS-DDELSKL--S 114
Query: 113 QCLKQIIKLKVATLEGISDSIKRSGAFKVDLTKQQIEEIVRALVLDNQIMEVKSNGSGEF 172
+ + + + I +I+++ LT +++ IV AL+ D ++E+ +N +
Sbjct: 115 ALVYKAVGRAPVVFDDICKAIQKNEVGT--LTPEEVRVIVGALIADGAVVEMLTNMGPAY 172
Query: 173 --TNIPVGKVC--YKNVSKGGGGGEPKTGSLASIPCGVCPQINICKPDGVISPKTCVYYT 228
N C Y V G +A+ PC CP + +C P ISP+ C+Y
Sbjct: 173 RSVNSDFYSYCPSYDQVPGHQGM------HVAATPCCKCPHLYVCGPGSAISPEQCLYIN 226
Query: 229 KWL 231
+WL
Sbjct: 227 QWL 229
>gi|358332161|dbj|GAA50865.1| DNA-directed RNA polymerase III subunit RPC6 [Clonorchis sinensis]
Length = 1081
Score = 46.6 bits (109), Expect = 0.008, Method: Composition-based stats.
Identities = 32/121 (26%), Positives = 65/121 (53%), Gaps = 8/121 (6%)
Query: 53 VTKSIKSLQNKSLIKEVVNIHSKGKKHLMAVEFEPSKEISGGAWYS-EGSLDTEFIKVVK 111
+ + +KSL K LIKE+ + +K + ++ +PS++++ ++ E +D EF+ +++
Sbjct: 836 IPRILKSLIAKKLIKELPMSTGQKQKVYLLIDLQPSEKLAANTLFAGESGVDGEFVAILR 895
Query: 112 SQCLKQIIKLKVATLEGISDSIKRSGAFKVDLTKQQIEEIVRALVLDNQIMEVKSNGSGE 171
+ CLK ++ K I+D ++R A V +EEI R + + +I + NG E
Sbjct: 896 TACLK-YLQDKTNIAANIADPLERRNASYV-----SVEEIHR-FISNARICNKQPNGDVE 948
Query: 172 F 172
+
Sbjct: 949 Y 949
Score = 43.1 bits (100), Expect = 0.10, Method: Composition-based stats.
Identities = 30/107 (28%), Positives = 45/107 (42%), Gaps = 24/107 (22%)
Query: 139 FKVDLTKQQIEEIVRALVLDNQIMEVKSNGSGEFTNIPVGKVCYKNVSKGGGGGEP---- 194
KV +T Q ++ ++ AL E++S + E +N+S G P
Sbjct: 987 LKVTMTLQDVQCVLDALKYGG---ELESRITSEID---------RNISASSGSPSPMRTM 1034
Query: 195 --------KTGSLASIPCGVCPQINICKPDGVISPKTCVYYTKWLDF 233
T LA +PC VC C+P G ISP+ C + +LDF
Sbjct: 1035 YRLAPQTASTAGLAHLPCTVCMCRKDCRPGGSISPENCKLFNAFLDF 1081
>gi|146093093|ref|XP_001466658.1| conserved hypothetical protein [Leishmania infantum JPCM5]
gi|134071021|emb|CAM69700.1| conserved hypothetical protein [Leishmania infantum JPCM5]
Length = 448
Score = 46.6 bits (109), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 31/123 (25%), Positives = 61/123 (49%), Gaps = 8/123 (6%)
Query: 14 DSLTDHERLIYDVIRSKQDMGIWTRDMKREL-RVNLPDNIVTKSIKSLQNKSLIKEVVNI 72
+++ ++ L+ D +R+ GI D + L +V +P + K++ +L K+LIKE +
Sbjct: 72 NNINENLSLVLDAVRASGSSGI---DQTQLLSKVRMPKTELGKALAALTAKNLIKEHRSF 128
Query: 73 HSKGKKHLMAVEFEPSKEISGGAWYSEGSLDTEFIKVVKSQCLKQIIKLKVATLEGISDS 132
++ K+ +PS I+GGA Y LD F+ + + + + ++ + D
Sbjct: 129 TNRAKRIYTLFNIDPSTHITGGAMYCGEELDVAFVDEWRRELTRFVSTRRMVSF----DQ 184
Query: 133 IKR 135
IKR
Sbjct: 185 IKR 187
>gi|407039037|gb|EKE39429.1| hypothetical protein ENU1_128820 [Entamoeba nuttalli P19]
Length = 151
Score = 46.6 bits (109), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 37/139 (26%), Positives = 63/139 (45%), Gaps = 11/139 (7%)
Query: 95 AWYSEGSLDTEFIKVVKSQCLKQIIKLKVATLEGISDSIKRSGAFKVDLTKQQIEEIVRA 154
++++ LD +F+ + ++ AT+ D ++ SG VD+ K++I ++
Sbjct: 16 VFFTKTGLDADFVTTLSDHIFMFLLNKGGATVIETYDYVRESGISNVDIKKEEILSLLER 75
Query: 155 LV-LDNQIMEVKSNGSGEFTNIPVGKVCYKNVSKGGGGGEPKTGSLASIPCGVCPQINIC 213
LV L N + V NG+ G +K V K G P L+ +PC CP +IC
Sbjct: 76 LVYLGNAEVSVAKNGNSSL----YGSKVFKPV-KFMVGRCP----LSEVPCYNCPYSSIC 126
Query: 214 KPDGV-ISPKTCVYYTKWL 231
P V +P+ C + L
Sbjct: 127 SPTNVSCNPRNCKAFVDLL 145
>gi|398018787|ref|XP_003862558.1| hypothetical protein, conserved [Leishmania donovani]
gi|322500788|emb|CBZ35865.1| hypothetical protein, conserved [Leishmania donovani]
Length = 448
Score = 46.2 bits (108), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 31/123 (25%), Positives = 61/123 (49%), Gaps = 8/123 (6%)
Query: 14 DSLTDHERLIYDVIRSKQDMGIWTRDMKREL-RVNLPDNIVTKSIKSLQNKSLIKEVVNI 72
+++ ++ L+ D +R+ GI D + L +V +P + K++ +L K+LIKE +
Sbjct: 72 NNINENLSLVLDAVRASGSSGI---DQTQLLSKVRMPKTELGKALAALTAKNLIKEHRSF 128
Query: 73 HSKGKKHLMAVEFEPSKEISGGAWYSEGSLDTEFIKVVKSQCLKQIIKLKVATLEGISDS 132
++ K+ +PS I+GGA Y LD F+ + + + + ++ + D
Sbjct: 129 TNRAKRIYTLFNIDPSTHITGGAMYCGEELDVAFVDEWRRELTRFVSTRRMVSF----DQ 184
Query: 133 IKR 135
IKR
Sbjct: 185 IKR 187
>gi|167393313|ref|XP_001740524.1| hypothetical protein [Entamoeba dispar SAW760]
gi|165895355|gb|EDR23068.1| hypothetical protein EDI_143800 [Entamoeba dispar SAW760]
Length = 151
Score = 46.2 bits (108), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 37/139 (26%), Positives = 63/139 (45%), Gaps = 11/139 (7%)
Query: 95 AWYSEGSLDTEFIKVVKSQCLKQIIKLKVATLEGISDSIKRSGAFKVDLTKQQIEEIVRA 154
++++ LD +F+ + ++ AT+ D ++ SG VD+ K++I ++
Sbjct: 16 VFFTKTGLDADFVTTLSDHIFMFLLNKGGATVIETYDYVRESGISNVDIKKEEILSLLER 75
Query: 155 LV-LDNQIMEVKSNGSGEFTNIPVGKVCYKNVSKGGGGGEPKTGSLASIPCGVCPQINIC 213
LV L N + V NG+ G +K V K G P L+ +PC CP +IC
Sbjct: 76 LVYLGNAEVSVAKNGNSSL----YGSKIFKPV-KFMVGRCP----LSEVPCYNCPYSSIC 126
Query: 214 KPDGV-ISPKTCVYYTKWL 231
P V +P+ C + L
Sbjct: 127 SPTNVSCNPRNCKAFVDLL 145
>gi|401888712|gb|EJT52664.1| DNA-directed RNA polymerase iii 34 kda polypeptide [Trichosporon
asahii var. asahii CBS 2479]
gi|406696770|gb|EKD00046.1| DNA-directed RNA polymerase iii 34 kda polypeptide [Trichosporon
asahii var. asahii CBS 8904]
Length = 568
Score = 46.2 bits (108), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 15/30 (50%), Positives = 19/30 (63%)
Query: 203 PCGVCPQINICKPDGVISPKTCVYYTKWLD 232
PCG CPQ N C+ G ++ C Y+T WLD
Sbjct: 468 PCGPCPQFNFCQEGGPVNATDCKYFTSWLD 497
Score = 41.2 bits (95), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 40/178 (22%), Positives = 80/178 (44%), Gaps = 23/178 (12%)
Query: 14 DSLTDHERLIYDVIRSKQDMGIWTRDMKRELRVN-LPDNIVTKSIKSLQNKSLIKEVVNI 72
++LT+ ++ + ++ + GI + ++ +P + V K++++L+ L+K ++
Sbjct: 65 NTLTEEQQFVLSIVEKAGNKGISRPSISNQIPPEVMPRSQVNKALEALEKNMLVKTFKSV 124
Query: 73 HSKGKKHLMAVEFEPSKEISGGAWYSEG-SLDTEFIK-----VVKSQCLKQ----IIKL- 121
++ + +P ++++GG W+ E D+ F+ V + C K+ I KL
Sbjct: 125 NAPTMPLYILHHLQPPEDLAGGIWFDESKEYDSMFVDSLRRVVYRYVCAKKGKDSINKLC 184
Query: 122 --------KVATLEGISD---SIKRSGAFKVDLTKQQIEEIVRALVLDNQIMEVKSNG 168
K L +D I+ S LT + + EI RAL LD I +K G
Sbjct: 185 SNPIYPVSKTGALPTPADVLRHIQNSKVTTAQLTIKNVMEIARALELDGLIEAIKPIG 242
>gi|401415860|ref|XP_003872425.1| conserved hypothetical protein [Leishmania mexicana
MHOM/GT/2001/U1103]
gi|322488649|emb|CBZ23896.1| conserved hypothetical protein [Leishmania mexicana
MHOM/GT/2001/U1103]
Length = 448
Score = 46.2 bits (108), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 31/123 (25%), Positives = 61/123 (49%), Gaps = 8/123 (6%)
Query: 14 DSLTDHERLIYDVIRSKQDMGIWTRDMKREL-RVNLPDNIVTKSIKSLQNKSLIKEVVNI 72
+++ ++ L+ D +R+ GI D + L +V +P + K++ +L K+LIKE +
Sbjct: 72 NNINENLSLVLDAVRASGSSGI---DQTQLLSKVRMPKTELGKALAALTAKNLIKEHRSF 128
Query: 73 HSKGKKHLMAVEFEPSKEISGGAWYSEGSLDTEFIKVVKSQCLKQIIKLKVATLEGISDS 132
++ K+ +PS I+GGA Y LD F+ + + + + ++ + D
Sbjct: 129 TNRAKRIYTLFNIDPSTHITGGAMYCGEELDVAFVDEWRRELTRFVSTRRMVSF----DQ 184
Query: 133 IKR 135
IKR
Sbjct: 185 IKR 187
>gi|392573780|gb|EIW66918.1| hypothetical protein TREMEDRAFT_74612 [Tremella mesenterica DSM
1558]
Length = 583
Score = 45.8 bits (107), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 14/30 (46%), Positives = 20/30 (66%)
Query: 202 IPCGVCPQINICKPDGVISPKTCVYYTKWL 231
+PCG CPQ +C+ DG ++ + C YY WL
Sbjct: 504 VPCGNCPQFALCEDDGPVNARECEYYDDWL 533
Score = 40.4 bits (93), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 26/117 (22%), Positives = 55/117 (47%), Gaps = 2/117 (1%)
Query: 7 PDSNAPSDSLTDHERLIYDVIRSKQDMGIWTRDMKREL-RVNLPDNIVTKSIKSLQNKSL 65
PD LTD ++++ +VI+S + GI ++ ++ R +P + K++ L+
Sbjct: 69 PDDAKKKTILTDQQKVVLNVIKSAGNRGISQVTIRNQIGREAMPVVTLRKTLDQLEKDGH 128
Query: 66 IKEVVNIHSKGKKHLMAVEFEPSKEISGGAWYSEG-SLDTEFIKVVKSQCLKQIIKL 121
+K I + + P ++I+GG W+ + D E ++V+ K++ L
Sbjct: 129 VKTFKGISAPTLALYILPHLTPPEDIAGGVWFDQTKDYDAELVRVICELLFKRVESL 185
>gi|357511403|ref|XP_003625990.1| hypothetical protein MTR_7g109760 [Medicago truncatula]
gi|355501005|gb|AES82208.1| hypothetical protein MTR_7g109760 [Medicago truncatula]
Length = 111
Score = 45.4 bits (106), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 45/159 (28%), Positives = 69/159 (43%), Gaps = 57/159 (35%)
Query: 4 RKRPDSNAPSDSLTDHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNK 63
R+R S SLT+ E ++Y NL + +V K
Sbjct: 10 RQRKQQKV-SKSLTNEEHILY----------------------NLMNALVEKY------- 39
Query: 64 SLIKEVVNIHSKGKKHLMAVEFEPSKEISGGAWYSEGSLDTEFIKVVKSQCLKQIIKLKV 123
S++KEV NI +KG K+ + +K+ LK I KV
Sbjct: 40 SMVKEVPNIQNKGIKN---------------------------VYTLKNVYLKCIFMQKV 72
Query: 124 ATLEGISDSIKRSGAFKVDLTKQQIEEIVRALVLDNQIM 162
+T G + IK+SG F ++T +QIEEI++ LVLD++I+
Sbjct: 73 STCNGCLEWIKKSGIFNSEVTGKQIEEILQTLVLDDEIL 111
>gi|389593925|ref|XP_003722211.1| conserved hypothetical protein [Leishmania major strain Friedlin]
gi|321438709|emb|CBZ12469.1| conserved hypothetical protein [Leishmania major strain Friedlin]
Length = 448
Score = 45.1 bits (105), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 31/123 (25%), Positives = 60/123 (48%), Gaps = 8/123 (6%)
Query: 14 DSLTDHERLIYDVIRSKQDMGIWTRDMKREL-RVNLPDNIVTKSIKSLQNKSLIKEVVNI 72
+++ ++ L+ D +R GI D + L +V +P + K++ +L K+LIKE +
Sbjct: 72 NNINENLSLVLDAVRGSGSSGI---DQTQLLSKVRMPKTELGKALAALTAKNLIKEHRSF 128
Query: 73 HSKGKKHLMAVEFEPSKEISGGAWYSEGSLDTEFIKVVKSQCLKQIIKLKVATLEGISDS 132
++ K+ +PS I+GGA Y LD F+ + + + + ++ + D
Sbjct: 129 TNRAKRIYTLFNIDPSTHITGGAMYCGEELDVAFVDEWRRELTRFVSTRRMVSF----DQ 184
Query: 133 IKR 135
IKR
Sbjct: 185 IKR 187
>gi|159164165|pdb|2DK5|A Chain A, Solution Structure Of Winged-Helix Domain In Rna
Polymerase Iii 39kda Polypeptide
Length = 91
Score = 45.1 bits (105), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 40/64 (62%), Gaps = 2/64 (3%)
Query: 18 DHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVVNIHSKGK 77
+ E+L+Y +I + GIW+RD++ + NLP + K +K+L++K LIK V ++ + K
Sbjct: 20 NQEKLVYQIIEDAGNKGIWSRDVR--YKSNLPLTEINKILKNLESKKLIKAVKSVAASKK 77
Query: 78 KHLM 81
K M
Sbjct: 78 KVYM 81
>gi|154341062|ref|XP_001566484.1| conserved hypothetical protein [Leishmania braziliensis
MHOM/BR/75/M2904]
gi|134063807|emb|CAM39996.1| conserved hypothetical protein [Leishmania braziliensis
MHOM/BR/75/M2904]
Length = 447
Score = 45.1 bits (105), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 31/115 (26%), Positives = 56/115 (48%), Gaps = 8/115 (6%)
Query: 22 LIYDVIRSKQDMGIWTRDMKREL-RVNLPDNIVTKSIKSLQNKSLIKEVVNIHSKGKKHL 80
L+ D +R+ GI D + L +V +P + K++ +L K+LIKE + ++ K+
Sbjct: 80 LVLDAVRASGAGGI---DQTQLLSKVRMPKTELGKALTALTAKNLIKEHRSFTNRAKRIY 136
Query: 81 MAVEFEPSKEISGGAWYSEGSLDTEFIKVVKSQCLKQIIKLKVATLEGISDSIKR 135
+PS I+GGA Y LD F+ + + + + ++ + D IKR
Sbjct: 137 TLFNIDPSSHITGGAMYCGEELDVAFVDEWRRELTRFVSTRRMVSF----DQIKR 187
>gi|67467108|ref|XP_649674.1| hypothetical protein [Entamoeba histolytica HM-1:IMSS]
gi|56466173|gb|EAL44299.1| hypothetical protein EHI_147230 [Entamoeba histolytica HM-1:IMSS]
gi|449706461|gb|EMD46301.1| Hypothetical protein EHI5A_156760 [Entamoeba histolytica KU27]
Length = 151
Score = 44.3 bits (103), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 36/140 (25%), Positives = 62/140 (44%), Gaps = 11/140 (7%)
Query: 94 GAWYSEGSLDTEFIKVVKSQCLKQIIKLKVATLEGISDSIKRSGAFKVDLTKQQIEEIVR 153
++++ LD +F+ + ++ AT+ D ++ SG VD+ K++I ++
Sbjct: 15 NVFFTKTGLDADFVTTLSDHIFMFLLNKGGATVIETYDYVRESGISNVDIKKEEILSLLE 74
Query: 154 ALV-LDNQIMEVKSNGSGEFTNIPVGKVCYKNVSKGGGGGEPKTGSLASIPCGVCPQINI 212
LV L N + V N + G +K V K G P L+ +PC CP +I
Sbjct: 75 RLVYLGNAEVSVAKNSNSSL----YGSKVFKPV-KFMVGRCP----LSEVPCYNCPYSSI 125
Query: 213 CKPDGV-ISPKTCVYYTKWL 231
C P V +P+ C + L
Sbjct: 126 CSPTNVSCNPRNCKAFVDLL 145
>gi|58268956|ref|XP_571634.1| DNA-directed RNA polymerase iii 34 kda polypeptide [Cryptococcus
neoformans var. neoformans JEC21]
gi|134112798|ref|XP_774942.1| hypothetical protein CNBF1070 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50257590|gb|EAL20295.1| hypothetical protein CNBF1070 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|57227869|gb|AAW44327.1| DNA-directed RNA polymerase iii 34 kda polypeptide, putative
[Cryptococcus neoformans var. neoformans JEC21]
Length = 559
Score = 44.3 bits (103), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 19/29 (65%)
Query: 203 PCGVCPQINICKPDGVISPKTCVYYTKWL 231
PCG CP + C+ DG ++P C YY +WL
Sbjct: 484 PCGKCPVFHFCEEDGPVNPTGCEYYGEWL 512
Score = 42.0 bits (97), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 27/121 (22%), Positives = 66/121 (54%), Gaps = 5/121 (4%)
Query: 7 PDSNAPSDSLTDHERLIYDVIRSKQDMGIWTRDMKRELRVN-LPDNIVTKSIKSLQNKSL 65
P+ +LT + +I +IRS + GI + + R + + +P +++ K +K+L+++
Sbjct: 72 PEEAKQKATLTQEQSIILSIIRSAGNRGIASAQITRTIGTDTMPISMLRKVLKTLESEGH 131
Query: 66 IKEVVNIHSKGKKHLMAVEFEPSKEISGGAWYSEGSLDTEFIK-VVKSQCLKQIIKLKVA 124
IK+ +++ + + + +EISGG W+ + + E+ + +V++ C + +++ A
Sbjct: 132 IKQFKPVNAPTSVYYILAHLKLPEEISGGVWFDD---NKEYDQGLVETICAVLLNRVRTA 188
Query: 125 T 125
T
Sbjct: 189 T 189
>gi|321259858|ref|XP_003194649.1| DNA-directed RNA polymerase iii 34 kDa polypeptide [Cryptococcus
gattii WM276]
gi|317461121|gb|ADV22862.1| DNA-directed RNA polymerase iii 34 kDa polypeptide, putative
[Cryptococcus gattii WM276]
Length = 557
Score = 43.9 bits (102), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 14/29 (48%), Positives = 19/29 (65%)
Query: 203 PCGVCPQINICKPDGVISPKTCVYYTKWL 231
PCG CP + C+ DG ++P C YY +WL
Sbjct: 483 PCGKCPVFHFCEEDGPVNPTGCEYYGEWL 511
Score = 42.7 bits (99), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 31/132 (23%), Positives = 71/132 (53%), Gaps = 8/132 (6%)
Query: 7 PDSNAPSDSLTDHERLIYDVIRSKQDMGIWTRDMKRELRVN-LPDNIVTKSIKSLQNKSL 65
P+ +LT + +I +IRS + GI + + R + + +P +++ K +K+L+++
Sbjct: 72 PEEAKQKATLTQEQSIILSIIRSAGNRGIASAQITRTIGTDTMPISMLRKVLKTLESEGH 131
Query: 66 IKEVVNIHSKGKKHLMAVEFEPSKEISGGAWYSEGSLDTEFIK-VVKSQCLKQIIKLKVA 124
IK+ +++ + + + +EISGG W+ + + E+ + +V++ C + +++ A
Sbjct: 132 IKQFKPVNAPTSVYYILAHLKLPEEISGGVWFDD---NKEYDQGLVETICAVLLNRVRTA 188
Query: 125 TLEGISDSIKRS 136
T D+ KRS
Sbjct: 189 TY---VDNKKRS 197
>gi|405121157|gb|AFR95926.1| DNA-directed RNA polymerase III 34 kda polypeptide [Cryptococcus
neoformans var. grubii H99]
Length = 561
Score = 42.7 bits (99), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 27/123 (21%), Positives = 67/123 (54%), Gaps = 5/123 (4%)
Query: 5 KRPDSNAPSDSLTDHERLIYDVIRSKQDMGIWTRDMKRELRVN-LPDNIVTKSIKSLQNK 63
+ P+ +LT + +I +IRS + GI + + R + + +P +++ K +K+L+++
Sbjct: 70 QTPEEAKQKATLTQEQSIILSIIRSAGNRGIASAQITRTIGTDTMPISMLRKVLKTLESE 129
Query: 64 SLIKEVVNIHSKGKKHLMAVEFEPSKEISGGAWYSEGSLDTEFIK-VVKSQCLKQIIKLK 122
IK+ +++ + + + +EISGG W+ + + E+ + +V++ C + +++
Sbjct: 130 GHIKQFKPVNAPTSVYYILAHLKLPEEISGGVWFDD---NKEYDQGLVETICAVLLNRVR 186
Query: 123 VAT 125
AT
Sbjct: 187 TAT 189
Score = 41.6 bits (96), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 18/29 (62%)
Query: 203 PCGVCPQINICKPDGVISPKTCVYYTKWL 231
PCG CP + C+ G ++P C YY +WL
Sbjct: 486 PCGKCPVFHFCEESGPVNPAGCEYYGEWL 514
>gi|444520451|gb|ELV13003.1| Protein transport protein Sec23B [Tupaia chinensis]
Length = 630
Score = 42.0 bits (97), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 20/55 (36%), Positives = 36/55 (65%), Gaps = 2/55 (3%)
Query: 18 DHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVVNI 72
+ E+L+Y +I + GIW+RD++ + NLP + K +K+L++K LIK V ++
Sbjct: 69 NQEKLVYQIIEDAGNKGIWSRDIR--YKSNLPLTEINKILKNLESKKLIKAVKSV 121
>gi|156937008|ref|YP_001434804.1| hypothetical protein Igni_0213 [Ignicoccus hospitalis KIN4/I]
gi|156565992|gb|ABU81397.1| hypothetical protein Igni_0213 [Ignicoccus hospitalis KIN4/I]
Length = 161
Score = 41.6 bits (96), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 15/38 (39%), Positives = 19/38 (50%)
Query: 195 KTGSLASIPCGVCPQINICKPDGVISPKTCVYYTKWLD 232
+ G +A IPC CP N C P P TC +WL+
Sbjct: 107 RMGLVAKIPCTSCPHANRCGPGNFFDPATCTKLGQWLE 144
>gi|47197137|emb|CAF88729.1| unnamed protein product [Tetraodon nigroviridis]
Length = 123
Score = 41.2 bits (95), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 33/52 (63%), Gaps = 2/52 (3%)
Query: 18 DHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEV 69
+ E+L+Y +I + GIW+RD++ + NLP + K +K+L+ K LIK V
Sbjct: 70 NQEKLVYQIIEDAGNKGIWSRDIR--FKSNLPLTEINKILKNLEGKKLIKAV 119
>gi|159164846|pdb|2YU3|A Chain A, Solution Structure Of The Domain Swapped Wingedhelix In
Dna- Directed Rna Polymerase Iii 39 Kda Polypeptide
Length = 95
Score = 41.2 bits (95), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 20/52 (38%), Positives = 34/52 (65%), Gaps = 2/52 (3%)
Query: 18 DHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEV 69
+ E+L+Y +I + GIW+RD++ + NLP + K +K+L++K LIK V
Sbjct: 37 NQEKLVYQIIEDAGNKGIWSRDVR--YKSNLPLTEINKILKNLESKKLIKAV 86
>gi|342180343|emb|CCC89820.1| conserved hypothetical protein [Trypanosoma congolense IL3000]
Length = 192
Score = 40.8 bits (94), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 14/32 (43%), Positives = 23/32 (71%), Gaps = 2/32 (6%)
Query: 202 IPCGVCPQINICKPD--GVISPKTCVYYTKWL 231
+PC C Q+++C PD GV++P++C Y +WL
Sbjct: 160 LPCVGCAQLHVCTPDGNGVVNPRSCAYLKEWL 191
>gi|167044323|gb|ABZ09002.1| putative Late embryogenesis abundant protein [uncultured marine
crenarchaeote HF4000_APKG6B14]
Length = 406
Score = 40.8 bits (94), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 20/36 (55%)
Query: 196 TGSLASIPCGVCPQINICKPDGVISPKTCVYYTKWL 231
T S+ PC CP + C DG ISPKTC + W+
Sbjct: 365 TKSIEGAPCLTCPVQSKCSIDGEISPKTCQWIEDWV 400
>gi|145507762|ref|XP_001439836.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124407031|emb|CAK72439.1| unnamed protein product [Paramecium tetraurelia]
Length = 201
Score = 40.8 bits (94), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 14/28 (50%), Positives = 18/28 (64%)
Query: 199 LASIPCGVCPQINICKPDGVISPKTCVY 226
L+ +PC CP N CKP ISP+ CV+
Sbjct: 172 LSYLPCQTCPVFNQCKPGNTISPEKCVF 199
>gi|167042176|gb|ABZ06909.1| putative Late embryogenesis abundant protein [uncultured marine
crenarchaeote HF4000_ANIW93H17]
Length = 387
Score = 40.8 bits (94), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 16/36 (44%), Positives = 20/36 (55%)
Query: 196 TGSLASIPCGVCPQINICKPDGVISPKTCVYYTKWL 231
T S+ PC CP + C DG ISPKTC + W+
Sbjct: 346 TKSIEGAPCLTCPVQSKCSIDGEISPKTCQWIEDWV 381
>gi|307594883|ref|YP_003901200.1| MarR family transcriptional regulator [Vulcanisaeta distributa DSM
14429]
gi|307550084|gb|ADN50149.1| transcriptional regulator, MarR family [Vulcanisaeta distributa DSM
14429]
Length = 144
Score = 40.0 bits (92), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 15/33 (45%), Positives = 19/33 (57%)
Query: 199 LASIPCGVCPQINICKPDGVISPKTCVYYTKWL 231
L IPC CP I+IC I+P+ C Y KW+
Sbjct: 102 LTKIPCFYCPYIDICGTTDEITPEKCEYLNKWI 134
>gi|325969120|ref|YP_004245312.1| MarR family transcriptional regulator [Vulcanisaeta moutnovskia
768-28]
gi|323708323|gb|ADY01810.1| transcriptional regulator, MarR family [Vulcanisaeta moutnovskia
768-28]
Length = 144
Score = 39.3 bits (90), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 19/33 (57%)
Query: 199 LASIPCGVCPQINICKPDGVISPKTCVYYTKWL 231
L IPC CP I++C I+P+ C Y KW+
Sbjct: 102 LTKIPCFYCPYIDVCGTTDEITPEKCEYLNKWI 134
>gi|291236645|ref|XP_002738250.1| PREDICTED: GTF3C1 protein-like [Saccoglossus kowalevskii]
Length = 826
Score = 39.3 bits (90), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 24/50 (48%), Positives = 30/50 (60%), Gaps = 3/50 (6%)
Query: 23 IYDVIRSKQDMGIWTRDMKRE---LRVNLPDNIVTKSIKSLQNKSLIKEV 69
IY+VI SK++ GI TRDM + R + IV IK LQ+KSLI E
Sbjct: 585 IYNVIESKKEFGIATRDMYQHSVISRYGMSREIVETVIKLLQDKSLIIEA 634
>gi|118431194|ref|NP_147491.2| hypothetical protein APE_0784.1 [Aeropyrum pernix K1]
gi|116062518|dbj|BAA79762.2| conserved hypothetical protein [Aeropyrum pernix K1]
Length = 121
Score = 38.5 bits (88), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 21/35 (60%)
Query: 197 GSLASIPCGVCPQINICKPDGVISPKTCVYYTKWL 231
GS+ IPC VCP I+ C G SP++C +W+
Sbjct: 84 GSILDIPCVVCPYIDECGEGGFYSPESCRLIDEWV 118
>gi|118575757|ref|YP_875500.1| transcriptional regulator [Cenarchaeum symbiosum A]
gi|118194278|gb|ABK77196.1| transcriptional regulator [Cenarchaeum symbiosum A]
Length = 362
Score = 37.4 bits (85), Expect = 4.7, Method: Compositional matrix adjust.
Identities = 14/36 (38%), Positives = 21/36 (58%)
Query: 196 TGSLASIPCGVCPQINICKPDGVISPKTCVYYTKWL 231
T S+ + PC +CP C DG I+P+TC + W+
Sbjct: 316 TASIENSPCLICPVEQQCSADGEINPRTCQWILDWV 351
>gi|393795308|ref|ZP_10378672.1| hypothetical protein CNitlB_02953, partial [Candidatus
Nitrosoarchaeum limnia BG20]
Length = 166
Score = 37.0 bits (84), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 21/36 (58%)
Query: 196 TGSLASIPCGVCPQINICKPDGVISPKTCVYYTKWL 231
T S+ + PC VCP C +G ISP+TC + W+
Sbjct: 120 TLSIENAPCLVCPVEQKCSLEGEISPRTCQFIEDWV 155
>gi|329766422|ref|ZP_08257966.1| transcription regulator [Candidatus Nitrosoarchaeum limnia SFB1]
gi|329137021|gb|EGG41313.1| transcription regulator [Candidatus Nitrosoarchaeum limnia SFB1]
Length = 119
Score = 36.6 bits (83), Expect = 8.7, Method: Compositional matrix adjust.
Identities = 15/36 (41%), Positives = 21/36 (58%)
Query: 196 TGSLASIPCGVCPQINICKPDGVISPKTCVYYTKWL 231
T S+ + PC VCP C +G ISP+TC + W+
Sbjct: 73 TLSIENAPCLVCPVEQKCSLEGEISPRTCQFIEDWV 108
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.315 0.134 0.388
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,659,342,264
Number of Sequences: 23463169
Number of extensions: 146947674
Number of successful extensions: 300476
Number of sequences better than 100.0: 423
Number of HSP's better than 100.0 without gapping: 392
Number of HSP's successfully gapped in prelim test: 31
Number of HSP's that attempted gapping in prelim test: 299381
Number of HSP's gapped (non-prelim): 573
length of query: 233
length of database: 8,064,228,071
effective HSP length: 138
effective length of query: 95
effective length of database: 9,121,278,045
effective search space: 866521414275
effective search space used: 866521414275
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 74 (33.1 bits)