Query 026766
Match_columns 233
No_of_seqs 142 out of 244
Neff 5.6
Searched_HMMs 29240
Date Mon Mar 25 21:38:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026766.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/026766hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2dk5_A DNA-directed RNA polyme 99.9 1.3E-25 4.6E-30 170.9 10.1 84 5-90 7-90 (91)
2 2yu3_A DNA-directed RNA polyme 99.9 5E-23 1.7E-27 158.2 8.5 73 3-77 22-94 (95)
3 1sd4_A Penicillinase repressor 98.6 1.4E-06 5E-11 66.7 13.2 114 13-155 5-120 (126)
4 3eco_A MEPR; mutlidrug efflux 98.3 3.7E-06 1.3E-10 64.8 8.8 66 14-81 27-92 (139)
5 3bro_A Transcriptional regulat 98.2 5.9E-06 2E-10 63.5 9.3 65 14-80 30-94 (141)
6 1okr_A MECI, methicillin resis 98.2 3.2E-05 1.1E-09 58.8 12.5 61 13-80 5-69 (123)
7 2g9w_A Conserved hypothetical 98.1 2.6E-05 8.8E-10 61.5 11.2 62 13-80 4-69 (138)
8 2frh_A SARA, staphylococcal ac 98.1 8.1E-06 2.8E-10 63.2 7.1 65 14-80 33-97 (127)
9 3k0l_A Repressor protein; heli 98.0 1.5E-05 5.1E-10 63.4 8.4 65 14-82 42-106 (162)
10 3u2r_A Regulatory protein MARR 98.0 7.6E-06 2.6E-10 65.5 6.5 62 14-77 42-103 (168)
11 3bdd_A Regulatory protein MARR 98.0 2.8E-05 9.7E-10 59.5 9.0 64 15-82 28-91 (142)
12 1p6r_A Penicillinase repressor 98.0 3.2E-05 1.1E-09 55.5 8.6 57 13-71 4-62 (82)
13 1jgs_A Multiple antibiotic res 98.0 3E-05 1E-09 59.4 8.9 63 14-80 30-92 (138)
14 1lj9_A Transcriptional regulat 98.0 2.3E-05 8E-10 60.4 8.4 64 14-81 25-88 (144)
15 3bj6_A Transcriptional regulat 98.0 2.5E-05 8.5E-10 60.8 8.5 65 14-82 36-100 (152)
16 1sfx_A Conserved hypothetical 98.0 4E-05 1.4E-09 56.1 9.1 54 15-72 17-70 (109)
17 2nnn_A Probable transcriptiona 98.0 2E-05 6.7E-10 60.3 7.7 62 15-80 35-96 (140)
18 3ech_A MEXR, multidrug resista 98.0 1.1E-05 3.6E-10 62.6 6.2 63 14-80 33-95 (142)
19 2rdp_A Putative transcriptiona 98.0 2.8E-05 9.6E-10 60.4 8.6 63 14-80 38-100 (150)
20 3oop_A LIN2960 protein; protei 98.0 2.5E-05 8.5E-10 60.5 8.2 64 14-81 33-96 (143)
21 2vn2_A DNAD, chromosome replic 98.0 1.1E-05 3.9E-10 63.4 6.3 70 15-87 29-101 (128)
22 3nrv_A Putative transcriptiona 98.0 1.7E-05 5.9E-10 61.6 7.2 63 15-81 37-99 (148)
23 3e6m_A MARR family transcripti 98.0 2.1E-05 7.1E-10 62.5 7.7 63 15-81 50-112 (161)
24 3hsr_A HTH-type transcriptiona 98.0 1.2E-05 4.1E-10 62.5 6.1 65 14-82 32-96 (140)
25 3r0a_A Putative transcriptiona 98.0 3.5E-05 1.2E-09 60.0 8.8 71 14-87 22-92 (123)
26 3jw4_A Transcriptional regulat 98.0 6.1E-06 2.1E-10 64.5 4.3 64 14-79 37-100 (148)
27 3g3z_A NMB1585, transcriptiona 97.9 2.4E-05 8.1E-10 60.7 7.7 65 14-82 27-91 (145)
28 3cjn_A Transcriptional regulat 97.9 3.3E-05 1.1E-09 61.0 8.5 64 15-82 49-112 (162)
29 3bja_A Transcriptional regulat 97.9 2.6E-05 8.8E-10 59.6 7.3 64 14-81 29-92 (139)
30 2eth_A Transcriptional regulat 97.9 2.9E-05 1E-09 61.0 7.7 63 15-81 41-103 (154)
31 3nqo_A MARR-family transcripti 97.9 3.1E-05 1.1E-09 63.7 8.2 65 14-80 37-101 (189)
32 4b8x_A SCO5413, possible MARR- 97.9 3E-05 1E-09 61.4 7.7 66 14-81 31-96 (147)
33 4hbl_A Transcriptional regulat 97.9 2.7E-05 9.3E-10 61.0 7.3 64 14-81 37-100 (149)
34 2fbi_A Probable transcriptiona 97.9 3.2E-05 1.1E-09 59.2 7.4 62 15-80 33-94 (142)
35 2gxg_A 146AA long hypothetical 97.9 5E-05 1.7E-09 58.6 8.4 62 14-80 33-94 (146)
36 2bv6_A MGRA, HTH-type transcri 97.9 3.6E-05 1.2E-09 59.4 7.5 63 15-81 34-96 (142)
37 1z91_A Organic hydroperoxide r 97.9 2.8E-05 9.7E-10 60.1 6.9 64 14-81 36-99 (147)
38 3s2w_A Transcriptional regulat 97.9 3.9E-05 1.3E-09 60.7 7.8 64 14-81 46-109 (159)
39 2nyx_A Probable transcriptiona 97.9 5.4E-05 1.8E-09 60.7 8.7 62 15-80 42-103 (168)
40 2a61_A Transcriptional regulat 97.9 4.3E-05 1.5E-09 58.8 7.8 62 15-80 30-91 (145)
41 4aik_A Transcriptional regulat 97.9 7.1E-05 2.4E-09 59.7 9.3 64 14-80 27-90 (151)
42 1s3j_A YUSO protein; structura 97.9 5.7E-05 1.9E-09 58.9 8.5 63 14-80 33-95 (155)
43 3bpv_A Transcriptional regulat 97.9 4.5E-05 1.5E-09 58.2 7.8 58 14-75 25-82 (138)
44 2qww_A Transcriptional regulat 97.9 4.9E-05 1.7E-09 59.4 8.1 63 15-81 38-102 (154)
45 2fbh_A Transcriptional regulat 97.9 5.4E-05 1.8E-09 58.2 8.1 64 14-80 33-96 (146)
46 3tgn_A ADC operon repressor AD 97.8 5.3E-05 1.8E-09 58.5 7.9 65 13-82 33-97 (146)
47 3f3x_A Transcriptional regulat 97.8 4.3E-05 1.5E-09 59.2 7.2 62 15-81 34-95 (144)
48 3cdh_A Transcriptional regulat 97.8 3.4E-05 1.2E-09 60.5 6.6 64 14-81 39-102 (155)
49 2fa5_A Transcriptional regulat 97.8 4.3E-05 1.5E-09 60.2 7.2 62 15-80 46-107 (162)
50 1p4x_A Staphylococcal accessor 97.8 3.3E-05 1.1E-09 67.5 6.9 149 14-167 30-210 (250)
51 2pex_A Transcriptional regulat 97.8 7.1E-05 2.4E-09 58.5 7.9 64 14-81 43-106 (153)
52 3fm5_A Transcriptional regulat 97.8 4.3E-05 1.5E-09 59.7 6.7 64 14-80 35-98 (150)
53 3deu_A Transcriptional regulat 97.8 8.4E-05 2.9E-09 59.8 8.0 66 14-82 49-114 (166)
54 1ub9_A Hypothetical protein PH 97.7 0.00015 5.2E-09 52.7 8.1 62 17-82 15-76 (100)
55 1qgp_A Protein (double strande 97.7 6.8E-05 2.3E-09 54.4 6.0 50 19-70 15-65 (77)
56 2hr3_A Probable transcriptiona 97.7 5.8E-05 2E-09 58.3 6.0 64 14-80 31-94 (147)
57 1fx7_A Iron-dependent represso 97.7 0.00018 6.3E-09 61.3 9.6 118 13-156 1-121 (230)
58 3kp7_A Transcriptional regulat 97.7 4.9E-05 1.7E-09 59.4 5.4 59 15-78 35-95 (151)
59 3lmm_A Uncharacterized protein 97.7 6.4E-05 2.2E-09 73.2 7.0 127 14-164 426-563 (583)
60 2fxa_A Protease production reg 97.7 0.0001 3.4E-09 61.9 7.3 63 14-80 44-106 (207)
61 1ku9_A Hypothetical protein MJ 97.7 0.00019 6.6E-09 55.0 8.4 64 14-81 22-85 (152)
62 3boq_A Transcriptional regulat 97.6 5.6E-05 1.9E-09 59.4 5.4 63 15-80 44-106 (160)
63 1p4x_A Staphylococcal accessor 97.6 0.00012 4E-09 64.0 7.9 62 14-77 154-215 (250)
64 1tbx_A ORF F-93, hypothetical 97.6 9.1E-05 3.1E-09 54.6 6.1 55 14-72 4-62 (99)
65 2d1h_A ST1889, 109AA long hypo 97.6 0.00047 1.6E-08 50.3 9.9 58 14-74 17-74 (109)
66 2k4b_A Transcriptional regulat 97.6 7.9E-05 2.7E-09 56.7 5.7 63 13-80 30-94 (99)
67 2v79_A DNA replication protein 97.6 0.0001 3.5E-09 59.0 6.4 70 15-87 29-101 (135)
68 1hsj_A Fusion protein consisti 97.6 9.5E-05 3.3E-09 68.3 7.1 64 14-80 400-463 (487)
69 2fbk_A Transcriptional regulat 97.6 4.5E-05 1.6E-09 61.9 4.0 65 14-80 65-130 (181)
70 2qvo_A Uncharacterized protein 97.6 0.00014 4.9E-09 53.6 6.2 64 15-83 9-74 (95)
71 2x4h_A Hypothetical protein SS 97.5 0.0009 3.1E-08 51.7 10.6 113 13-155 8-125 (139)
72 1qbj_A Protein (double-strande 97.5 0.00036 1.2E-08 51.3 7.2 61 18-84 10-71 (81)
73 2w25_A Probable transcriptiona 97.4 0.00061 2.1E-08 53.9 8.8 58 15-76 4-61 (150)
74 3cuo_A Uncharacterized HTH-typ 97.4 0.00069 2.4E-08 49.1 8.4 58 18-82 24-81 (99)
75 2cfx_A HTH-type transcriptiona 97.4 0.00078 2.7E-08 53.1 8.6 57 15-75 2-58 (144)
76 4fx0_A Probable transcriptiona 97.3 0.0003 1E-08 55.8 5.9 58 14-74 29-89 (148)
77 2ia0_A Putative HTH-type trans 97.3 0.00094 3.2E-08 54.7 8.8 72 12-87 11-86 (171)
78 2fsw_A PG_0823 protein; alpha- 97.3 0.00088 3E-08 50.4 7.5 59 22-85 29-88 (107)
79 2p5v_A Transcriptional regulat 97.3 0.0014 4.9E-08 52.5 9.1 59 13-75 5-63 (162)
80 2qq9_A Diphtheria toxin repres 97.2 0.00083 2.8E-08 57.2 8.0 118 14-157 2-122 (226)
81 2dbb_A Putative HTH-type trans 97.2 0.00072 2.5E-08 53.5 6.6 58 14-75 5-62 (151)
82 2htj_A P fimbrial regulatory p 97.2 0.0014 4.7E-08 46.9 7.5 71 21-99 3-73 (81)
83 2f2e_A PA1607; transcription f 97.2 0.00096 3.3E-08 53.3 7.3 59 20-84 26-84 (146)
84 2oqg_A Possible transcriptiona 97.2 0.0017 5.7E-08 48.5 8.2 49 18-71 21-69 (114)
85 2xvc_A ESCRT-III, SSO0910; cel 97.1 0.001 3.5E-08 46.2 6.1 45 20-67 12-56 (59)
86 2obp_A Putative DNA-binding pr 97.1 0.0032 1.1E-07 47.8 9.0 61 14-78 12-76 (96)
87 2pn6_A ST1022, 150AA long hypo 97.0 0.001 3.5E-08 52.4 5.9 56 16-75 1-56 (150)
88 2cg4_A Regulatory protein ASNC 97.0 0.0025 8.6E-08 50.4 8.3 56 15-74 5-60 (152)
89 1xmk_A Double-stranded RNA-spe 97.0 0.001 3.5E-08 48.8 5.5 59 18-84 11-70 (79)
90 2jt1_A PEFI protein; solution 97.0 0.0033 1.1E-07 45.8 8.0 51 20-73 6-61 (77)
91 2cyy_A Putative HTH-type trans 97.0 0.0013 4.6E-08 52.1 6.3 57 15-75 4-60 (151)
92 2pg4_A Uncharacterized protein 97.0 0.0014 4.9E-08 47.9 6.0 54 22-80 19-73 (95)
93 2heo_A Z-DNA binding protein 1 97.0 0.0024 8.4E-08 44.7 6.8 51 15-68 7-57 (67)
94 2hzt_A Putative HTH-type trans 96.9 0.0033 1.1E-07 47.2 7.9 59 22-84 18-76 (107)
95 2wte_A CSA3; antiviral protein 96.9 0.0024 8.2E-08 55.6 8.1 51 15-69 149-199 (244)
96 1z7u_A Hypothetical protein EF 96.9 0.0034 1.2E-07 47.5 7.7 61 20-84 24-84 (112)
97 3jth_A Transcription activator 96.9 0.0029 1E-07 46.3 7.1 47 19-70 24-70 (98)
98 3i4p_A Transcriptional regulat 96.9 0.0033 1.1E-07 50.7 8.0 56 16-75 1-56 (162)
99 3k2z_A LEXA repressor; winged 96.9 0.0019 6.5E-08 53.6 6.7 53 15-69 2-57 (196)
100 2lnb_A Z-DNA-binding protein 1 96.9 0.0017 5.8E-08 47.8 5.6 62 17-87 18-79 (80)
101 1r1u_A CZRA, repressor protein 96.9 0.0041 1.4E-07 46.5 7.8 47 19-70 27-73 (106)
102 2e1c_A Putative HTH-type trans 96.9 0.0037 1.3E-07 51.2 8.2 57 15-75 24-80 (171)
103 1i1g_A Transcriptional regulat 96.9 0.0016 5.3E-08 50.6 5.6 58 16-77 2-59 (141)
104 1yyv_A Putative transcriptiona 96.8 0.0031 1.1E-07 49.6 6.8 50 32-83 46-96 (131)
105 3pqk_A Biofilm growth-associat 96.7 0.0065 2.2E-07 44.8 7.9 47 19-70 24-70 (102)
106 2lkp_A Transcriptional regulat 96.7 0.0075 2.6E-07 45.5 8.1 49 17-70 31-79 (119)
107 1u2w_A CADC repressor, cadmium 96.6 0.0061 2.1E-07 46.9 7.5 47 20-70 44-90 (122)
108 1y0u_A Arsenical resistance op 96.6 0.008 2.7E-07 44.0 7.4 47 18-70 31-77 (96)
109 2kko_A Possible transcriptiona 96.6 0.0063 2.2E-07 45.8 6.9 46 20-70 27-72 (108)
110 1xma_A Predicted transcription 96.5 0.0049 1.7E-07 49.5 6.6 63 19-84 42-112 (145)
111 2qlz_A Transcription factor PF 96.5 0.004 1.4E-07 53.9 6.5 47 18-69 12-58 (232)
112 2h09_A Transcriptional regulat 96.5 0.01 3.6E-07 46.6 8.1 42 25-70 47-88 (155)
113 2esh_A Conserved hypothetical 96.4 0.006 2.1E-07 46.8 6.2 63 19-84 14-84 (118)
114 2fu4_A Ferric uptake regulatio 96.4 0.012 4E-07 41.8 7.3 59 15-73 14-75 (83)
115 2pjp_A Selenocysteine-specific 96.4 0.021 7.2E-07 44.0 9.2 109 16-161 1-110 (121)
116 3f6o_A Probable transcriptiona 96.4 0.0096 3.3E-07 45.3 7.0 56 19-82 19-74 (118)
117 3df8_A Possible HXLR family tr 96.4 0.0074 2.5E-07 45.8 6.3 58 21-84 30-87 (111)
118 1q1h_A TFE, transcription fact 96.4 0.008 2.7E-07 44.9 6.4 51 18-71 18-68 (110)
119 2k02_A Ferrous iron transport 96.3 0.0084 2.9E-07 44.7 6.2 46 21-70 5-50 (87)
120 1xn7_A Hypothetical protein YH 96.3 0.0082 2.8E-07 43.7 5.9 45 21-69 5-49 (78)
121 3l7w_A Putative uncharacterize 96.3 0.01 3.5E-07 44.8 6.7 62 19-83 10-74 (108)
122 1on2_A Transcriptional regulat 96.3 0.0088 3E-07 46.2 6.3 36 33-70 21-56 (142)
123 4a5n_A Uncharacterized HTH-typ 96.2 0.016 5.5E-07 45.9 7.9 52 32-84 37-88 (131)
124 2jsc_A Transcriptional regulat 96.2 0.011 3.9E-07 45.1 6.8 52 14-70 16-68 (118)
125 1sfu_A 34L protein; protein/Z- 96.2 0.014 4.9E-07 42.5 6.9 51 19-71 13-64 (75)
126 3b73_A PHIH1 repressor-like pr 96.2 0.0098 3.4E-07 46.0 6.1 52 16-69 11-62 (111)
127 1uly_A Hypothetical protein PH 96.2 0.01 3.4E-07 49.7 6.6 51 16-71 18-68 (192)
128 2p4w_A Transcriptional regulat 96.1 0.022 7.6E-07 48.0 8.5 60 18-82 15-76 (202)
129 1r7j_A Conserved hypothetical 96.0 0.015 5.2E-07 43.4 6.4 46 21-69 8-53 (95)
130 1r1t_A Transcriptional repress 96.0 0.025 8.5E-07 43.6 7.8 44 22-70 50-93 (122)
131 1oyi_A Double-stranded RNA-bin 96.0 0.0067 2.3E-07 44.9 4.2 45 20-69 19-63 (82)
132 2co5_A Viral protein F93; vira 96.0 0.024 8.1E-07 42.8 7.3 68 14-84 5-75 (99)
133 3hrs_A Metalloregulator SCAR; 96.0 0.054 1.8E-06 45.6 10.3 109 21-157 9-118 (214)
134 1z6r_A MLC protein; transcript 95.9 0.011 3.9E-07 53.7 6.1 50 19-72 17-66 (406)
135 4esb_A Transcriptional regulat 95.8 0.021 7.3E-07 43.8 6.7 63 19-84 10-78 (115)
136 4g6q_A Putative uncharacterize 95.8 0.063 2.2E-06 44.2 10.0 115 22-155 27-154 (182)
137 2vxz_A Pyrsv_GP04; viral prote 95.7 0.086 2.9E-06 43.3 9.8 113 20-156 13-135 (165)
138 3f6v_A Possible transcriptiona 95.7 0.016 5.6E-07 46.6 5.6 56 19-82 59-114 (151)
139 2zkz_A Transcriptional repress 95.6 0.05 1.7E-06 40.1 7.8 47 19-70 28-74 (99)
140 3cta_A Riboflavin kinase; stru 95.6 0.032 1.1E-06 47.1 7.5 54 16-71 5-62 (230)
141 2hoe_A N-acetylglucosamine kin 95.5 0.01 3.4E-07 53.8 4.2 48 19-71 21-68 (380)
142 4esf_A PADR-like transcription 95.5 0.046 1.6E-06 42.1 7.3 62 20-84 13-80 (117)
143 1xn7_A Hypothetical protein YH 95.4 0.058 2E-06 39.1 7.3 46 112-165 5-50 (78)
144 3elk_A Putative transcriptiona 95.4 0.03 1E-06 43.2 6.1 62 19-83 15-82 (117)
145 2zcw_A TTHA1359, transcription 95.4 0.05 1.7E-06 43.6 7.7 51 16-68 117-178 (202)
146 2dql_A PEX protein; circadian 95.4 0.03 1E-06 43.0 6.0 63 22-84 26-93 (115)
147 1bja_A Transcription regulator 95.4 0.031 1.1E-06 42.3 5.9 50 14-67 12-62 (95)
148 3f8b_A Transcriptional regulat 95.4 0.047 1.6E-06 41.8 7.0 63 19-84 13-83 (116)
149 1z05_A Transcriptional regulat 95.3 0.032 1.1E-06 51.2 6.9 48 19-70 40-87 (429)
150 3ryp_A Catabolite gene activat 95.2 0.07 2.4E-06 42.6 7.9 51 16-68 138-199 (210)
151 3iwz_A CAP-like, catabolite ac 95.2 0.07 2.4E-06 43.3 8.0 51 16-68 158-219 (230)
152 1yg2_A Gene activator APHA; vi 95.2 0.051 1.7E-06 44.3 7.1 62 20-84 4-73 (179)
153 2e1n_A PEX, period extender; c 95.1 0.025 8.5E-07 45.1 4.9 69 16-84 32-105 (138)
154 2xzm_8 RPS25E,; ribosome, tran 95.1 0.045 1.5E-06 44.3 6.3 60 20-83 46-108 (143)
155 1zyb_A Transcription regulator 95.0 0.072 2.5E-06 43.8 7.6 54 13-68 159-218 (232)
156 3b02_A Transcriptional regulat 95.0 0.055 1.9E-06 43.2 6.7 53 14-68 108-171 (195)
157 2oz6_A Virulence factor regula 95.0 0.089 3E-06 41.9 7.9 51 16-68 135-196 (207)
158 3hhh_A Transcriptional regulat 94.9 0.055 1.9E-06 41.6 6.3 63 19-84 14-82 (116)
159 3ri2_A Transcriptional regulat 94.8 0.055 1.9E-06 42.2 6.1 61 20-84 23-87 (123)
160 3u1d_A Uncharacterized protein 94.8 0.15 5E-06 41.6 8.8 51 19-71 30-81 (151)
161 3t8r_A Staphylococcus aureus C 94.8 0.05 1.7E-06 43.2 5.8 65 20-92 13-78 (143)
162 1ft9_A Carbon monoxide oxidati 94.7 0.055 1.9E-06 44.0 6.2 62 16-85 133-206 (222)
163 3kcc_A Catabolite gene activat 94.7 0.11 3.8E-06 43.7 8.3 59 16-82 188-257 (260)
164 1jhf_A LEXA repressor; LEXA SO 94.6 0.051 1.8E-06 44.6 5.7 55 13-69 1-59 (202)
165 2k02_A Ferrous iron transport 94.5 0.095 3.3E-06 38.9 6.4 46 112-165 5-50 (87)
166 1mzb_A Ferric uptake regulatio 94.4 0.15 5.1E-06 39.8 7.7 66 15-82 15-83 (136)
167 3lwf_A LIN1550 protein, putati 94.4 0.16 5.5E-06 41.3 8.1 61 25-93 34-95 (159)
168 1k78_A Paired box protein PAX5 94.2 1.4 4.9E-05 33.9 13.7 108 14-153 31-140 (149)
169 2y75_A HTH-type transcriptiona 94.1 0.11 3.7E-06 39.8 6.3 63 22-92 13-76 (129)
170 2zfw_A PEX; five alpha-helices 94.1 0.058 2E-06 43.6 4.8 60 22-84 48-115 (148)
171 3dv8_A Transcriptional regulat 93.9 0.098 3.4E-06 42.0 5.9 51 16-68 146-201 (220)
172 2fe3_A Peroxide operon regulat 93.9 0.26 9E-06 38.8 8.3 64 15-81 19-85 (145)
173 3e6c_C CPRK, cyclic nucleotide 93.8 0.13 4.6E-06 42.5 6.8 60 15-82 146-217 (250)
174 3d0s_A Transcriptional regulat 93.8 0.094 3.2E-06 42.6 5.7 51 16-68 147-209 (227)
175 2w57_A Ferric uptake regulatio 93.7 0.27 9.2E-06 39.1 8.1 66 15-82 14-82 (150)
176 3la7_A Global nitrogen regulat 93.6 0.11 3.8E-06 43.1 5.9 51 16-68 163-225 (243)
177 2fmy_A COOA, carbon monoxide o 93.6 0.1 3.6E-06 42.2 5.6 50 17-68 138-199 (220)
178 3u5c_Z RP45, S31, YS23, 40S ri 93.6 0.074 2.5E-06 41.2 4.3 74 2-82 28-103 (108)
179 4ham_A LMO2241 protein; struct 93.5 0.98 3.4E-05 34.8 10.9 53 22-81 18-78 (134)
180 2gau_A Transcriptional regulat 93.5 0.22 7.5E-06 40.5 7.4 51 16-68 151-212 (232)
181 1mkm_A ICLR transcriptional re 93.5 0.15 5.3E-06 43.4 6.7 45 22-69 12-56 (249)
182 3iz6_V 40S ribosomal protein S 93.4 0.038 1.3E-06 42.9 2.5 46 33-82 59-104 (108)
183 2xrn_A HTH-type transcriptiona 93.4 0.15 5.1E-06 43.4 6.5 45 22-69 10-54 (241)
184 2k27_A Paired box protein PAX- 93.4 0.84 2.9E-05 35.7 10.5 113 14-158 24-138 (159)
185 2xig_A Ferric uptake regulatio 93.3 0.3 1E-05 38.8 7.8 64 15-81 24-90 (150)
186 3eyy_A Putative iron uptake re 93.3 0.25 8.5E-06 39.1 7.2 64 14-81 15-81 (145)
187 4ev0_A Transcription regulator 93.2 0.16 5.3E-06 40.7 6.0 50 17-68 141-195 (216)
188 3e97_A Transcriptional regulat 93.2 0.13 4.5E-06 41.8 5.6 32 35-68 176-207 (231)
189 1pdn_C Protein (PRD paired); p 93.0 1.2 4.2E-05 32.4 10.4 107 15-153 17-125 (128)
190 3ulq_B Transcriptional regulat 93.0 0.22 7.5E-06 36.5 6.0 47 11-63 25-71 (90)
191 2p8t_A Hypothetical protein PH 92.9 0.19 6.6E-06 42.7 6.4 52 16-70 13-64 (200)
192 2w48_A Sorbitol operon regulat 92.8 0.18 6.3E-06 44.4 6.4 49 19-69 6-55 (315)
193 1fse_A GERE; helix-turn-helix 92.8 0.33 1.1E-05 32.9 6.3 46 11-62 7-52 (74)
194 1bm9_A RTP, TER, replication t 92.7 0.55 1.9E-05 37.0 8.3 84 1-84 1-92 (122)
195 3dkw_A DNR protein; CRP-FNR, H 92.7 0.21 7.2E-06 40.2 6.2 50 17-68 152-210 (227)
196 3rkx_A Biotin-[acetyl-COA-carb 92.6 0.23 7.8E-06 44.6 6.7 48 16-65 1-48 (323)
197 2o0y_A Transcriptional regulat 92.6 0.059 2E-06 46.4 2.8 46 22-69 24-71 (260)
198 1tc3_C Protein (TC3 transposas 92.5 0.19 6.4E-06 30.8 4.4 45 14-64 4-49 (51)
199 3mwm_A ZUR, putative metal upt 92.4 0.31 1E-05 38.3 6.5 65 15-82 11-78 (139)
200 2o03_A Probable zinc uptake re 92.4 0.28 9.5E-06 38.0 6.2 57 16-73 9-68 (131)
201 1ylf_A RRF2 family protein; st 92.4 0.23 7.9E-06 39.3 5.8 63 23-94 19-81 (149)
202 4ets_A Ferric uptake regulatio 91.9 0.52 1.8E-05 38.0 7.5 56 15-71 30-90 (162)
203 1je8_A Nitrate/nitrite respons 91.9 0.3 1E-05 34.7 5.4 50 8-63 14-63 (82)
204 1stz_A Heat-inducible transcri 91.9 0.3 1E-05 44.1 6.7 51 16-68 15-70 (338)
205 3fx3_A Cyclic nucleotide-bindi 91.7 0.42 1.5E-05 38.9 6.8 51 13-65 149-207 (237)
206 2fu4_A Ferric uptake regulatio 91.7 0.56 1.9E-05 32.8 6.6 53 111-166 19-73 (83)
207 1lva_A Selenocysteine-specific 91.6 1.4 4.6E-05 38.0 10.3 105 32-165 85-191 (258)
208 1o5l_A Transcriptional regulat 91.6 0.036 1.2E-06 45.1 0.2 51 16-68 141-196 (213)
209 3eyi_A Z-DNA-binding protein 1 91.5 0.57 2E-05 33.6 6.4 61 15-84 6-68 (72)
210 2p7v_B Sigma-70, RNA polymeras 91.5 0.69 2.3E-05 31.3 6.7 48 12-61 2-50 (68)
211 1xd7_A YWNA; structural genomi 91.5 0.33 1.1E-05 38.2 5.8 62 22-94 13-74 (145)
212 2v9v_A Selenocysteine-specific 91.5 3.6 0.00012 31.1 13.3 111 20-163 4-121 (135)
213 2z99_A Putative uncharacterize 91.4 0.73 2.5E-05 39.7 8.2 60 14-80 96-155 (219)
214 3c57_A Two component transcrip 91.4 0.34 1.2E-05 35.4 5.3 46 11-62 23-68 (95)
215 3k69_A Putative transcription 91.3 0.29 1E-05 39.6 5.3 49 22-72 16-64 (162)
216 1ku3_A Sigma factor SIGA; heli 91.2 0.88 3E-05 31.2 7.1 50 10-61 5-59 (73)
217 2o0m_A Transcriptional regulat 90.5 0.049 1.7E-06 48.9 0.0 49 15-67 17-65 (345)
218 3lmm_A Uncharacterized protein 90.3 0.052 1.8E-06 52.7 0.0 62 19-87 517-578 (583)
219 3mq0_A Transcriptional repress 90.2 0.31 1.1E-05 42.4 4.9 45 22-69 34-78 (275)
220 2b0l_A GTP-sensing transcripti 90.0 0.41 1.4E-05 35.9 4.8 33 36-70 45-77 (102)
221 3nw0_A Non-structural maintena 90.0 1.6 5.6E-05 37.5 9.2 139 15-163 2-153 (238)
222 3neu_A LIN1836 protein; struct 90.0 0.83 2.9E-05 35.0 6.7 48 20-69 15-70 (125)
223 3tqn_A Transcriptional regulat 89.8 0.69 2.4E-05 34.8 6.0 47 21-69 12-66 (113)
224 2g7u_A Transcriptional regulat 89.8 0.25 8.7E-06 42.3 3.9 46 22-69 15-62 (257)
225 1p4w_A RCSB; solution structur 89.7 0.78 2.7E-05 34.2 6.1 44 13-62 32-75 (99)
226 1v4r_A Transcriptional repress 89.7 0.35 1.2E-05 35.5 4.2 48 20-69 13-68 (102)
227 3qph_A TRMB, A global transcri 89.6 0.0067 2.3E-07 55.1 -6.5 61 15-83 15-75 (342)
228 1xmk_A Double-stranded RNA-spe 89.5 0.57 1.9E-05 34.0 5.0 49 108-164 10-59 (79)
229 2qby_A CDC6 homolog 1, cell di 89.3 0.96 3.3E-05 39.0 7.3 70 13-85 281-363 (386)
230 3by6_A Predicted transcription 89.3 0.65 2.2E-05 35.8 5.6 48 20-69 13-68 (126)
231 2rnj_A Response regulator prot 89.2 0.36 1.2E-05 34.8 3.8 48 10-63 24-71 (91)
232 2ek5_A Predicted transcription 88.8 0.68 2.3E-05 35.9 5.4 46 22-69 8-61 (129)
233 1t6s_A Conserved hypothetical 88.8 0.35 1.2E-05 39.7 3.9 55 16-77 92-146 (162)
234 1lva_A Selenocysteine-specific 88.5 3.1 0.00011 35.7 10.0 111 15-163 134-248 (258)
235 2bgc_A PRFA; bacterial infecti 88.5 0.47 1.6E-05 38.9 4.6 33 34-68 169-202 (238)
236 2dk8_A DNA-directed RNA polyme 88.4 1.8 6E-05 31.7 7.0 66 18-88 14-79 (81)
237 1j5y_A Transcriptional regulat 88.4 0.89 3.1E-05 37.0 6.1 46 20-68 23-69 (187)
238 3r4k_A Transcriptional regulat 88.3 0.26 8.9E-06 42.4 2.9 35 32-68 19-53 (260)
239 2pi2_A Replication protein A 3 88.3 0.09 3.1E-06 46.0 0.0 52 15-68 204-257 (270)
240 2o8x_A Probable RNA polymerase 88.3 1.6 5.6E-05 28.9 6.5 46 11-61 11-56 (70)
241 1ldj_A Cullin homolog 1, CUL-1 87.7 0.86 3E-05 45.3 6.6 144 15-165 586-750 (760)
242 3u0k_A Rcamp; fluorescent prot 87.3 2.1 7.3E-05 40.3 8.7 120 13-158 293-423 (440)
243 1tty_A Sigma-A, RNA polymerase 87.0 1.4 4.8E-05 31.4 5.8 46 12-59 15-61 (87)
244 2ovk_B RLC, myosin regulatory 86.9 4.6 0.00016 30.0 9.0 120 8-155 2-130 (153)
245 2ia2_A Putative transcriptiona 86.4 1 3.6E-05 38.6 5.6 45 22-68 22-68 (265)
246 3mwm_A ZUR, putative metal upt 86.2 2.1 7.2E-05 33.3 6.9 55 109-166 14-69 (139)
247 3eyy_A Putative iron uptake re 86.0 1.3 4.3E-05 34.9 5.5 54 110-166 20-73 (145)
248 2xig_A Ferric uptake regulatio 85.3 3 0.0001 32.9 7.5 56 109-167 27-83 (150)
249 2o03_A Probable zinc uptake re 85.3 2.5 8.6E-05 32.4 6.9 57 108-167 10-67 (131)
250 1p2f_A Response regulator; DRR 85.3 1.7 5.9E-05 34.7 6.2 47 14-62 144-193 (220)
251 1x3u_A Transcriptional regulat 85.2 1.4 4.8E-05 30.1 4.8 45 13-63 14-58 (79)
252 3eqx_A FIC domain containing t 84.6 1.1 3.8E-05 40.9 5.2 55 21-82 300-354 (373)
253 2xub_A DNA-directed RNA polyme 84.5 16 0.00053 34.7 13.4 124 21-167 22-163 (534)
254 3l9f_A Putative uncharacterize 84.5 0.86 2.9E-05 38.4 4.1 62 20-84 38-107 (204)
255 3edp_A LIN2111 protein; APC883 84.5 1.6 5.4E-05 37.0 5.8 50 18-69 9-66 (236)
256 2htj_A P fimbrial regulatory p 83.7 2 6.8E-05 30.0 5.2 47 111-165 2-48 (81)
257 3t5x_A PCI domain-containing p 83.5 1.8 6.1E-05 36.2 5.6 68 96-167 108-183 (203)
258 3dpl_C Cullin-5; ubiquitin, NE 83.4 12 0.00041 34.0 11.6 144 16-165 197-372 (382)
259 2jt1_A PEFI protein; solution 83.4 1.7 5.7E-05 31.2 4.7 47 111-165 6-58 (77)
260 2fe3_A Peroxide operon regulat 83.4 3.6 0.00012 32.1 7.1 56 109-167 22-78 (145)
261 1oyi_A Double-stranded RNA-bin 83.2 0.72 2.4E-05 33.9 2.7 49 107-164 15-63 (82)
262 1qbj_A Protein (double-strande 83.1 2.7 9.3E-05 30.3 5.8 50 107-164 8-60 (81)
263 1p6r_A Penicillinase repressor 83.0 3.8 0.00013 28.3 6.5 53 110-166 10-62 (82)
264 4asn_A TUBR; transcription, tu 82.9 2.8 9.7E-05 31.1 5.8 65 13-81 9-77 (101)
265 3maj_A DNA processing chain A; 82.8 1.8 6.1E-05 40.1 5.8 52 14-70 324-375 (382)
266 3dtp_E RLC, myosin regulatory 82.7 9.7 0.00033 30.0 9.6 112 4-157 39-172 (196)
267 1ldd_A APC2WHB, anaphase promo 82.6 3.5 0.00012 29.6 6.1 54 111-164 10-66 (74)
268 1mzb_A Ferric uptake regulatio 82.6 3 0.0001 32.2 6.3 55 109-166 18-74 (136)
269 2qc0_A Uncharacterized protein 82.0 1.4 4.7E-05 40.1 4.7 54 21-81 300-353 (373)
270 3szt_A QCSR, quorum-sensing co 81.4 2.2 7.4E-05 35.8 5.4 45 13-63 173-217 (237)
271 3eet_A Putative GNTR-family tr 80.7 2.5 8.6E-05 36.6 5.8 47 22-70 33-87 (272)
272 3htu_A Vacuolar protein-sortin 80.0 5.3 0.00018 29.0 6.3 52 20-71 11-70 (79)
273 1u78_A TC3 transposase, transp 79.9 16 0.00054 27.0 11.4 99 14-155 5-103 (141)
274 3qao_A LMO0526 protein, MERR-l 79.9 16 0.00054 31.3 10.5 73 33-137 2-74 (249)
275 2v7f_A RPS19, RPS19E SSU ribos 79.6 2.1 7.2E-05 34.5 4.5 36 30-69 65-114 (150)
276 2w57_A Ferric uptake regulatio 79.4 3.5 0.00012 32.5 5.7 54 110-166 18-73 (150)
277 1w5s_A Origin recognition comp 79.3 6 0.0002 34.5 7.8 75 11-86 301-387 (412)
278 2gqq_A Leucine-responsive regu 79.3 0.31 1.1E-05 38.7 -0.5 50 15-68 10-59 (163)
279 3q9s_A DNA-binding response re 79.1 2.3 7.7E-05 35.4 4.8 56 15-70 182-247 (249)
280 2qlz_A Transcription factor PF 78.9 2 6.8E-05 36.9 4.4 36 33-70 177-212 (232)
281 1wdc_B Scallop myosin; calcium 78.7 17 0.00059 26.8 11.0 104 11-155 7-132 (156)
282 2wv0_A YVOA, HTH-type transcri 78.6 1.9 6.7E-05 36.5 4.3 32 36-69 36-67 (243)
283 1bia_A BIRA bifunctional prote 78.4 3.7 0.00013 36.3 6.2 48 17-68 4-51 (321)
284 1jhg_A Trp operon repressor; c 78.3 3.5 0.00012 31.2 5.2 43 16-61 36-83 (101)
285 1kgs_A DRRD, DNA binding respo 78.1 3.1 0.00011 33.1 5.2 47 14-62 150-201 (225)
286 2heo_A Z-DNA binding protein 1 77.9 2.6 8.8E-05 28.8 4.0 47 109-163 10-57 (67)
287 1hw1_A FADR, fatty acid metabo 77.6 3.6 0.00012 33.9 5.6 54 22-82 11-72 (239)
288 3cuq_B Vacuolar protein-sortin 77.2 24 0.00083 29.8 10.7 106 28-163 90-200 (218)
289 3hug_A RNA polymerase sigma fa 77.1 3.7 0.00013 29.2 4.8 42 13-59 35-76 (92)
290 1a04_A Nitrate/nitrite respons 77.1 4 0.00014 32.4 5.5 45 13-63 152-196 (215)
291 4ets_A Ferric uptake regulatio 76.6 5.3 0.00018 32.0 6.1 54 110-166 34-90 (162)
292 3t72_q RNA polymerase sigma fa 76.6 4.1 0.00014 30.3 5.1 48 12-61 16-68 (99)
293 2q0o_A Probable transcriptiona 76.5 4.6 0.00016 33.5 6.0 45 13-63 173-217 (236)
294 2jpc_A SSRB; DNA binding prote 76.3 3.1 0.00011 26.9 3.9 39 19-63 2-40 (61)
295 2elh_A CG11849-PA, LD40883P; s 76.3 7.5 0.00026 27.5 6.3 43 14-62 21-64 (87)
296 2mys_B Myosin; muscle protein, 76.3 22 0.00074 26.5 11.3 35 120-157 108-142 (166)
297 3klo_A Transcriptional regulat 76.0 4 0.00014 32.8 5.3 44 14-63 158-201 (225)
298 1l3l_A Transcriptional activat 75.7 5 0.00017 33.2 5.9 45 13-63 171-215 (234)
299 2hgc_A YJCQ protein; SR346, st 75.6 3.8 0.00013 31.2 4.6 57 22-89 9-65 (102)
300 2o3f_A Putative HTH-type trans 75.2 2.7 9.1E-05 31.7 3.7 51 13-65 16-68 (111)
301 1qgp_A Protein (double strande 74.8 4.1 0.00014 28.8 4.4 49 109-165 14-65 (77)
302 3bwg_A Uncharacterized HTH-typ 74.6 2.9 9.9E-05 35.3 4.2 32 36-69 31-62 (239)
303 2lhi_A Calmodulin, serine/thre 74.4 29 0.00098 27.1 10.7 120 14-156 3-130 (176)
304 3f8m_A GNTR-family protein tra 73.1 7.4 0.00025 33.0 6.5 33 36-71 38-70 (248)
305 1top_A Troponin C; contractIle 73.1 25 0.00085 25.8 9.0 36 120-158 109-144 (162)
306 1ys7_A Transcriptional regulat 73.1 4.4 0.00015 32.4 4.8 47 14-62 158-209 (233)
307 3qp6_A CVIR transcriptional re 73.0 9.2 0.00032 32.6 7.1 45 13-63 195-239 (265)
308 3sxy_A Transcriptional regulat 72.9 3.8 0.00013 33.6 4.5 46 22-69 16-68 (218)
309 3c3w_A Two component transcrip 72.3 8.5 0.00029 31.0 6.4 45 13-63 147-191 (225)
310 3c7j_A Transcriptional regulat 72.2 4.2 0.00014 34.2 4.6 48 21-70 29-83 (237)
311 2x8x_X TLR1789 protein, OMP85; 72.1 12 0.00041 30.2 7.3 60 30-89 13-77 (235)
312 1yio_A Response regulatory pro 71.8 7.5 0.00026 30.5 5.9 44 14-63 141-184 (208)
313 3i5g_B Myosin regulatory light 71.8 23 0.00078 27.1 8.6 112 10-154 4-129 (153)
314 1xb4_A VPS25, hypothetical 23. 71.1 6.4 0.00022 33.3 5.5 65 17-81 129-201 (202)
315 2vz4_A Tipal, HTH-type transcr 71.1 21 0.00073 26.2 7.9 71 34-136 1-71 (108)
316 3clo_A Transcriptional regulat 71.1 7.4 0.00025 32.8 6.0 42 13-60 195-236 (258)
317 2l02_A Uncharacterized protein 70.8 19 0.00065 26.3 7.3 54 20-81 10-63 (82)
318 4fp5_D LT-IIB, heat-labIle ent 70.1 2.9 0.0001 30.8 2.7 36 65-107 23-60 (98)
319 3fwb_A Cell division control p 70.1 29 0.001 25.3 12.1 121 1-158 1-144 (161)
320 1qb5_D Protein (heat labIle en 70.0 3.1 0.00011 30.7 2.9 37 64-107 22-60 (99)
321 3r0j_A Possible two component 70.0 13 0.00045 30.3 7.2 48 15-62 176-226 (250)
322 2esn_A Probable transcriptiona 69.9 10 0.00034 31.3 6.5 50 13-68 7-59 (310)
323 3p9c_A Caffeic acid O-methyltr 69.7 12 0.00039 33.3 7.2 49 20-70 42-95 (364)
324 1sfx_A Conserved hypothetical 69.3 13 0.00045 25.8 6.2 48 111-166 22-69 (109)
325 1iuf_A Centromere ABP1 protein 69.0 5.7 0.00019 30.9 4.5 52 1-61 4-61 (144)
326 3pfi_A Holliday junction ATP-d 68.9 11 0.00038 32.2 6.7 55 14-70 259-314 (338)
327 2hqr_A Putative transcriptiona 68.5 3.6 0.00012 32.8 3.3 46 14-61 142-192 (223)
328 1h8b_A ACT-EF34, alpha-actinin 68.4 7.7 0.00026 27.2 4.7 42 108-159 10-52 (75)
329 3gpv_A Transcriptional regulat 68.3 40 0.0014 26.3 9.4 70 34-135 16-85 (148)
330 3iwf_A Transcription regulator 68.1 6.3 0.00021 29.6 4.4 50 13-64 12-63 (107)
331 2xvc_A ESCRT-III, SSO0910; cel 67.9 7.1 0.00024 26.9 4.1 41 121-161 7-55 (59)
332 1q06_A Transcriptional regulat 67.9 39 0.0013 25.9 9.7 68 36-135 2-69 (135)
333 3ic7_A Putative transcriptiona 67.9 1.1 3.9E-05 34.3 0.1 32 36-69 37-68 (126)
334 3ke2_A Uncharacterized protein 67.2 18 0.0006 28.2 6.8 82 25-129 27-110 (117)
335 3qrx_A Centrin; calcium-bindin 66.8 36 0.0012 25.2 13.1 110 12-158 18-149 (169)
336 2hs5_A Putative transcriptiona 66.3 6.6 0.00023 32.9 4.6 48 21-70 31-85 (239)
337 3fzv_A Probable transcriptiona 66.3 7.9 0.00027 31.7 5.1 49 14-68 2-53 (306)
338 3ihu_A Transcriptional regulat 65.8 6.3 0.00021 32.3 4.3 46 22-69 20-72 (222)
339 1dtl_A Cardiac troponin C; hel 65.7 37 0.0013 24.8 8.9 117 6-159 2-144 (161)
340 1rp3_A RNA polymerase sigma fa 65.4 9.9 0.00034 30.5 5.4 40 13-57 185-224 (239)
341 2hye_C Cullin-4A, CUL-4A; beta 65.4 6.5 0.00022 39.0 5.0 142 15-165 590-749 (759)
342 2dg6_A Putative transcriptiona 65.1 46 0.0016 28.1 9.7 84 36-152 2-85 (222)
343 2kn2_A Calmodulin; S MAPK phos 64.6 19 0.00064 24.4 6.1 55 101-158 2-57 (92)
344 2ovk_B RLC, myosin regulatory 64.6 13 0.00046 27.3 5.7 57 100-161 8-65 (153)
345 2p5k_A Arginine repressor; DNA 64.2 26 0.00088 22.5 8.3 47 113-166 9-55 (64)
346 2x48_A CAG38821; archeal virus 64.0 7.9 0.00027 24.5 3.7 35 18-58 19-53 (55)
347 1ixc_A CBNR, LYSR-type regulat 64.0 15 0.0005 29.9 6.2 46 17-68 2-50 (294)
348 3mzy_A RNA polymerase sigma-H 63.7 14 0.00046 27.6 5.6 39 15-59 109-147 (164)
349 2oqr_A Sensory transduction pr 63.4 12 0.00041 29.8 5.5 49 14-62 155-206 (230)
350 1tw3_A COMT, carminomycin 4-O- 63.3 12 0.00041 32.5 5.9 42 23-69 44-85 (360)
351 1s7o_A Hypothetical UPF0122 pr 62.8 14 0.00049 27.7 5.5 43 14-61 21-63 (113)
352 2lv7_A Calcium-binding protein 62.8 8.3 0.00028 27.9 4.1 56 100-159 28-85 (100)
353 3bdn_A Lambda repressor; repre 62.7 9.1 0.00031 31.3 4.8 45 13-59 4-53 (236)
354 1r8d_A Transcription activator 62.3 43 0.0015 24.5 9.3 71 35-137 3-73 (109)
355 2ra5_A Putative transcriptiona 62.2 1.9 6.5E-05 36.6 0.5 47 21-69 19-73 (247)
356 3i53_A O-methyltransferase; CO 62.2 19 0.00063 31.0 6.9 45 20-69 27-71 (332)
357 1fnn_A CDC6P, cell division co 62.2 17 0.00057 31.3 6.6 59 13-71 283-353 (389)
358 3hhg_A Transcriptional regulat 61.8 17 0.00059 29.6 6.4 47 16-68 3-52 (306)
359 2gwr_A DNA-binding response re 61.1 17 0.0006 29.2 6.2 48 14-61 152-202 (238)
360 1jko_C HIN recombinase, DNA-in 61.1 5.3 0.00018 24.3 2.4 40 16-61 6-46 (52)
361 4a0z_A Transcription factor FA 61.1 6.3 0.00021 32.6 3.4 67 19-89 13-89 (190)
362 1xsv_A Hypothetical UPF0122 pr 61.1 15 0.00053 27.4 5.4 42 14-60 24-65 (113)
363 2di3_A Bacterial regulatory pr 60.9 6 0.00021 32.8 3.4 31 36-68 30-60 (239)
364 3szp_A Transcriptional regulat 60.8 18 0.00063 29.0 6.2 46 17-68 2-50 (291)
365 3dp7_A SAM-dependent methyltra 60.7 12 0.00042 32.9 5.5 43 23-68 40-82 (363)
366 4gyi_A RIO2 kinase; protein ki 60.6 8.2 0.00028 35.6 4.5 63 9-73 5-71 (397)
367 2xub_A DNA-directed RNA polyme 60.5 18 0.0006 34.3 6.9 47 19-69 361-407 (534)
368 1ub9_A Hypothetical protein PH 59.9 26 0.00088 24.2 6.2 52 107-166 14-65 (100)
369 2lmt_A Calmodulin-related prot 59.8 50 0.0017 24.4 12.2 120 13-158 1-131 (148)
370 1eh2_A EPS15; calcium binding, 59.5 17 0.00059 26.7 5.4 59 92-159 3-61 (106)
371 3ox6_A Calcium-binding protein 59.0 46 0.0016 23.8 8.3 56 100-158 3-59 (153)
372 1lmb_3 Protein (lambda repress 58.8 11 0.00037 26.1 3.9 26 31-58 27-52 (92)
373 2k4b_A Transcriptional regulat 58.6 6.8 0.00023 29.0 2.9 50 113-166 39-88 (99)
374 2qby_B CDC6 homolog 3, cell di 58.3 23 0.0008 30.4 6.8 58 13-71 279-341 (384)
375 1qzz_A RDMB, aclacinomycin-10- 58.2 15 0.00052 31.9 5.6 54 23-85 41-94 (374)
376 2cfx_A HTH-type transcriptiona 58.2 24 0.00083 26.8 6.2 49 109-165 5-53 (144)
377 1fp1_D Isoliquiritigenin 2'-O- 58.1 7.7 0.00026 34.2 3.7 45 23-69 49-101 (372)
378 2esh_A Conserved hypothetical 58.0 35 0.0012 25.2 7.0 72 108-186 12-84 (118)
379 3f8b_A Transcriptional regulat 57.8 55 0.0019 24.2 9.2 79 102-186 4-83 (116)
380 3cuo_A Uncharacterized HTH-typ 57.7 29 0.00098 24.0 6.1 48 110-165 25-72 (99)
381 2opo_A Polcalcin CHE A 3; calc 57.7 26 0.00088 23.3 5.7 54 101-158 4-58 (86)
382 3cuq_A Vacuolar-sorting protei 57.5 19 0.00064 31.1 5.9 52 13-68 149-200 (234)
383 2ijl_A AGR_C_4647P, molybdenum 57.1 19 0.00065 28.1 5.5 48 15-68 23-73 (135)
384 2fna_A Conserved hypothetical 56.9 14 0.00047 31.1 5.0 49 15-69 287-341 (357)
385 3gp4_A Transcriptional regulat 56.9 66 0.0023 24.9 9.1 70 34-135 2-71 (142)
386 1cf7_A Protein (transcription 56.8 26 0.00088 24.9 5.7 54 14-69 10-64 (76)
387 1okr_A MECI, methicillin resis 56.7 19 0.00065 26.1 5.2 52 111-166 12-63 (123)
388 2l1p_A DNA-binding protein SAT 56.7 9.7 0.00033 28.0 3.4 22 34-57 32-53 (83)
389 2v1u_A Cell division control p 56.7 33 0.0011 29.1 7.5 59 13-71 285-353 (387)
390 1yg2_A Gene activator APHA; vi 56.6 22 0.00074 28.3 5.9 71 110-186 3-73 (179)
391 2igp_A Retinoblastoma-associat 56.4 30 0.001 26.6 6.4 59 102-160 11-87 (120)
392 2ip2_A Probable phenazine-spec 56.0 19 0.00066 30.8 5.9 53 22-85 32-84 (334)
393 3k69_A Putative transcription 55.9 23 0.00079 28.1 5.9 57 101-165 6-62 (162)
394 3go5_A Multidomain protein wit 55.8 41 0.0014 29.4 8.0 55 13-69 219-278 (285)
395 3hh0_A Transcriptional regulat 55.8 70 0.0024 24.9 8.9 41 33-80 3-43 (146)
396 3lwf_A LIN1550 protein, putati 55.7 75 0.0026 25.2 9.0 62 96-165 16-78 (159)
397 2w25_A Probable transcriptiona 55.6 30 0.001 26.4 6.4 51 108-166 6-56 (150)
398 1avs_A Troponin C; muscle cont 55.6 41 0.0014 22.6 6.6 55 101-158 13-68 (90)
399 1b4a_A Arginine repressor; hel 55.6 29 0.00098 27.6 6.4 56 19-82 6-64 (149)
400 2r3s_A Uncharacterized protein 55.0 15 0.00052 31.2 5.0 42 22-68 30-71 (335)
401 3b73_A PHIH1 repressor-like pr 55.0 9.5 0.00033 28.9 3.3 53 106-164 10-62 (111)
402 1x19_A CRTF-related protein; m 54.9 17 0.00058 31.7 5.4 43 22-69 55-97 (359)
403 3cuq_C Vacuolar protein-sortin 54.8 19 0.00065 29.7 5.3 52 20-71 108-167 (176)
404 3bpv_A Transcriptional regulat 54.7 35 0.0012 24.7 6.4 47 112-166 32-78 (138)
405 3d5l_A Regulatory protein RECX 54.6 38 0.0013 28.3 7.3 59 98-162 42-109 (221)
406 2p5k_A Arginine repressor; DNA 54.3 40 0.0014 21.5 7.0 44 22-71 9-55 (64)
407 1hlv_A CENP-B, major centromer 54.3 30 0.001 25.5 6.0 45 14-62 6-51 (131)
408 1sd4_A Penicillinase repressor 54.1 33 0.0011 24.9 6.2 52 111-166 12-63 (126)
409 2rn7_A IS629 ORFA; helix, all 54.1 27 0.00092 25.1 5.6 49 15-65 6-59 (108)
410 3fwb_A Cell division control p 53.9 41 0.0014 24.4 6.8 57 99-158 14-71 (161)
411 1c07_A Protein (epidermal grow 53.8 32 0.0011 24.1 5.9 49 105-158 7-56 (95)
412 1fp2_A Isoflavone O-methyltran 53.7 22 0.00075 30.9 5.9 56 22-84 40-98 (352)
413 2p5v_A Transcriptional regulat 53.6 32 0.0011 26.6 6.4 50 108-165 9-58 (162)
414 3l4g_A Phenylalanyl-tRNA synth 53.5 2.8 9.5E-05 40.2 0.0 50 19-71 6-56 (508)
415 1ylf_A RRF2 family protein; st 52.8 44 0.0015 25.8 7.0 57 102-166 9-65 (149)
416 4a6d_A Hydroxyindole O-methylt 52.5 28 0.00096 30.6 6.5 59 20-84 30-88 (353)
417 3cuq_B Vacuolar protein-sortin 52.3 30 0.001 29.1 6.3 54 15-72 151-204 (218)
418 2pmy_A RAS and EF-hand domain- 52.1 24 0.00083 24.2 4.9 54 100-158 19-73 (91)
419 2ktg_A Calmodulin, putative; e 51.8 34 0.0012 22.5 5.5 55 101-158 7-62 (85)
420 2f2e_A PA1607; transcription f 51.8 79 0.0027 24.2 8.4 96 113-226 28-143 (146)
421 4ds7_A Calmodulin, CAM; protei 51.7 61 0.0021 23.0 10.9 105 15-156 4-130 (147)
422 1y0u_A Arsenical resistance op 51.7 31 0.001 24.3 5.5 46 110-165 32-77 (96)
423 3mcz_A O-methyltransferase; ad 51.6 16 0.00054 31.6 4.6 34 34-69 56-89 (352)
424 2l01_A Uncharacterized protein 51.2 35 0.0012 24.6 5.6 59 20-86 12-71 (77)
425 1zg3_A Isoflavanone 4'-O-methy 51.0 24 0.00082 30.7 5.7 47 20-69 32-81 (358)
426 2ve8_A FTSK, DNA translocase F 51.0 38 0.0013 24.1 5.7 54 22-81 14-67 (73)
427 1tbx_A ORF F-93, hypothetical 50.9 58 0.002 22.6 6.9 51 112-166 11-61 (99)
428 3ri2_A Transcriptional regulat 50.9 60 0.002 24.6 7.4 66 110-186 22-87 (123)
429 3isp_A HTH-type transcriptiona 50.6 19 0.00067 29.5 4.8 48 15-68 5-55 (303)
430 3jth_A Transcription activator 50.3 47 0.0016 23.2 6.3 46 111-165 25-70 (98)
431 3dtp_E RLC, myosin regulatory 49.8 14 0.00048 29.0 3.7 57 100-161 49-106 (196)
432 2dk8_A DNA-directed RNA polyme 49.8 68 0.0023 23.1 7.0 62 108-186 13-75 (81)
433 3rm1_A Protein S100-B; alpha-h 49.8 61 0.0021 22.4 7.0 50 106-158 7-64 (92)
434 1exr_A Calmodulin; high resolu 49.6 72 0.0024 23.1 12.7 35 120-157 96-130 (148)
435 3i5g_C Myosin catalytic light 49.3 29 0.00098 26.7 5.4 34 120-156 98-131 (159)
436 2dbb_A Putative HTH-type trans 49.3 28 0.00096 26.5 5.3 50 108-165 8-57 (151)
437 3ayh_A DNA-directed RNA polyme 49.2 43 0.0015 26.1 6.4 46 107-154 52-100 (136)
438 1k2h_A S100A1, S-100 protein, 49.2 56 0.0019 21.9 6.4 51 106-159 7-65 (93)
439 1uth_A LYSR-type regulatory pr 48.8 3.6 0.00012 34.6 0.0 72 1-80 1-78 (315)
440 2jn6_A Protein CGL2762, transp 48.7 44 0.0015 23.4 6.0 47 15-65 5-52 (97)
441 1neq_A DNA-binding protein NER 48.5 11 0.00037 26.2 2.5 38 14-58 7-44 (74)
442 1ufm_A COP9 complex subunit 4; 48.4 16 0.00056 26.2 3.5 55 100-165 10-64 (84)
443 1zar_A RIO2 kinase; serine kin 48.4 34 0.0012 28.8 6.2 56 11-68 5-62 (282)
444 1u5t_A Appears to BE functiona 48.3 25 0.00085 30.3 5.2 51 13-67 162-212 (233)
445 2y75_A HTH-type transcriptiona 48.3 33 0.0011 25.5 5.5 44 114-165 14-60 (129)
446 2jnf_A Troponin C; stretch act 48.2 76 0.0026 23.0 11.5 112 12-159 3-140 (158)
447 2vxz_A Pyrsv_GP04; viral prote 48.2 35 0.0012 27.9 5.7 52 106-166 8-59 (165)
448 3u5c_T 40S ribosomal protein S 48.0 14 0.00048 29.7 3.3 46 23-70 61-118 (144)
449 2xi8_A Putative transcription 47.4 15 0.00052 23.2 3.0 24 33-58 13-36 (66)
450 2joj_A Centrin protein; N-term 47.3 37 0.0013 21.8 5.0 52 104-158 3-55 (77)
451 3u1d_A Uncharacterized protein 47.0 74 0.0025 25.4 7.6 50 110-166 30-81 (151)
452 2w84_A Peroxisomal membrane pr 46.9 40 0.0014 23.9 5.2 41 109-154 16-58 (70)
453 1or7_A Sigma-24, RNA polymeras 46.8 35 0.0012 26.3 5.6 41 13-58 138-178 (194)
454 3b7h_A Prophage LP1 protein 11 46.5 29 0.001 22.7 4.4 26 30-57 16-41 (78)
455 1hqc_A RUVB; extended AAA-ATPa 46.4 49 0.0017 27.7 6.8 53 14-68 243-297 (324)
456 2ia0_A Putative HTH-type trans 46.4 47 0.0016 26.2 6.4 51 108-166 16-66 (171)
457 3k2z_A LEXA repressor; winged 46.2 37 0.0013 27.3 5.8 47 110-164 10-57 (196)
458 3mn2_A Probable ARAC family tr 46.2 51 0.0017 23.4 6.0 41 21-63 5-45 (108)
459 1wlz_A DJBP, CAP-binding prote 46.2 34 0.0012 23.7 5.0 33 121-156 38-70 (105)
460 3oop_A LIN2960 protein; protei 46.1 29 0.00099 25.6 4.8 46 113-166 41-86 (143)
461 2l0k_A Stage III sporulation p 45.9 32 0.0011 25.2 4.9 35 20-59 9-43 (93)
462 3fxq_A LYSR type regulator of 45.8 30 0.001 28.4 5.3 44 19-68 5-51 (305)
463 1on2_A Transcriptional regulat 45.8 54 0.0019 24.3 6.4 50 108-165 7-56 (142)
464 2oqg_A Possible transcriptiona 45.8 34 0.0011 24.4 5.0 47 111-166 23-69 (114)
465 3k0l_A Repressor protein; heli 45.8 40 0.0014 25.6 5.7 45 114-166 51-95 (162)
466 2rdp_A Putative transcriptiona 45.6 48 0.0016 24.4 6.0 46 113-166 46-91 (150)
467 2f2o_A Calmodulin fused with c 45.5 91 0.0031 23.2 11.8 101 21-158 14-132 (179)
468 1w7p_D VPS36P, YLR417W; ESCRT- 45.5 53 0.0018 31.8 7.6 105 35-163 435-547 (566)
469 3ff5_A PEX14P, peroxisomal bio 45.3 54 0.0019 22.0 5.4 41 108-153 10-52 (54)
470 3oou_A LIN2118 protein; protei 45.1 42 0.0014 24.0 5.4 42 21-64 8-49 (108)
471 1wwu_A Hypothetical protein FL 45.1 25 0.00084 26.6 4.1 31 123-153 23-67 (99)
472 3bro_A Transcriptional regulat 45.1 82 0.0028 22.7 7.2 45 114-166 39-85 (141)
473 2yuf_A NGFI-A-binding protein 45.0 58 0.002 25.9 6.4 45 93-137 1-45 (142)
474 4ds7_A Calmodulin, CAM; protei 44.7 56 0.0019 23.2 6.1 55 101-158 4-59 (147)
475 2w7n_A TRFB transcriptional re 44.7 21 0.00072 26.8 3.7 35 26-62 26-60 (101)
476 3tgn_A ADC operon repressor AD 44.4 46 0.0016 24.4 5.7 49 109-166 38-86 (146)
477 2jsc_A Transcriptional regulat 44.4 17 0.00059 26.9 3.2 48 109-165 21-68 (118)
478 2pi2_A Replication protein A 3 44.4 4.7 0.00016 35.0 0.0 52 107-165 205-259 (270)
479 2cg4_A Regulatory protein ASNC 44.4 42 0.0014 25.5 5.6 49 109-165 8-56 (152)
480 3akb_A Putative calcium bindin 44.2 53 0.0018 23.9 6.0 33 121-158 112-144 (166)
481 2fbh_A Transcriptional regulat 44.2 60 0.0021 23.6 6.3 44 114-165 42-86 (146)
482 2g9w_A Conserved hypothetical 44.1 41 0.0014 25.3 5.4 52 110-165 10-62 (138)
483 3lsg_A Two-component response 44.0 54 0.0019 23.1 5.8 43 20-64 4-47 (103)
484 1uxc_A FRUR (1-57), fructose r 44.0 20 0.0007 24.3 3.3 22 35-58 1-22 (65)
485 3oio_A Transcriptional regulat 43.7 43 0.0015 24.1 5.3 43 20-64 9-51 (113)
486 3sg6_A Gcamp2, myosin light ch 43.3 1.1E+02 0.0036 28.6 9.1 105 18-159 312-434 (450)
487 2dql_A PEX protein; circadian 43.2 98 0.0034 22.9 9.1 72 110-187 22-94 (115)
488 3efc_A OMP85, outer membrane p 43.1 89 0.003 27.7 8.3 96 31-126 84-221 (395)
489 2mys_B Myosin; muscle protein, 43.1 71 0.0024 23.5 6.7 57 101-161 18-75 (166)
490 2v9v_A Selenocysteine-specific 43.0 30 0.001 25.7 4.5 40 31-70 84-123 (135)
491 3l9f_A Putative uncharacterize 43.0 54 0.0018 27.1 6.4 71 110-186 37-107 (204)
492 3r0a_A Putative transcriptiona 43.0 33 0.0011 25.6 4.7 50 109-166 26-77 (123)
493 3g3z_A NMB1585, transcriptiona 42.8 38 0.0013 24.9 5.0 46 113-166 35-80 (145)
494 3bdd_A Regulatory protein MARR 42.7 62 0.0021 23.4 6.2 46 113-166 35-80 (142)
495 3s2w_A Transcriptional regulat 42.6 41 0.0014 25.3 5.3 45 114-166 55-99 (159)
496 2a05_A Cysteine-rich secretory 42.6 11 0.00036 25.8 1.6 27 202-232 1-27 (57)
497 3l09_A Putative transcriptiona 42.5 65 0.0022 28.0 7.1 58 21-82 26-88 (266)
498 2d1h_A ST1889, 109AA long hypo 42.2 62 0.0021 22.2 5.8 41 117-165 30-70 (109)
499 2obh_A Centrin-2; DNA repair c 42.0 95 0.0032 22.5 7.1 35 121-158 93-127 (143)
500 3qrx_A Centrin; calcium-bindin 41.8 75 0.0026 23.3 6.6 56 100-158 20-76 (169)
No 1
>2dk5_A DNA-directed RNA polymerase III 39 kDa polypeptide; structural genomics, winged helix domain, NPPSFA; NMR {Homo sapiens} SCOP: a.4.5.85
Probab=99.93 E-value=1.3e-25 Score=170.88 Aligned_cols=84 Identities=27% Similarity=0.492 Sum_probs=82.3
Q ss_pred CCCCCCCCCCCCChHHHHHHHHHHhhCCCcccHHHHHHHhhcCCChHHHHHHHHHHHhCCCceeeecccCCCeeeEEeec
Q 026766 5 KRPDSNAPSDSLTDHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVVNIHSKGKKHLMAVE 84 (233)
Q Consensus 5 ~~~~~~~~~~~L~~~e~lVy~~I~~aG~~GIw~~dik~~t~~~l~~~~v~k~LK~Le~k~lIK~vksV~~~~rK~Yml~~ 84 (233)
|+|+++.+..+|+++|.+||++|+++|++|||+++|++++ +|++++|+++||.||++||||+++++++++||+||||+
T Consensus 7 ~~~~~~~k~~~Lt~~q~~Vl~~I~~~g~~gi~qkeLa~~~--~l~~~tvt~iLk~LE~kglIkr~~~~~~~~rKvy~Ly~ 84 (91)
T 2dk5_A 7 GDSQNAGKMKGSDNQEKLVYQIIEDAGNKGIWSRDVRYKS--NLPLTEINKILKNLESKKLIKAVKSVAASKKKVYMLYN 84 (91)
T ss_dssp CCCCCCCCCCCSCSSHHHHHHHHHHHCTTCEEHHHHHHHT--TCCHHHHHHHHHHHHHTTSEEEECCSSCSSCCEEEESS
T ss_pred cCHHHHhhhcCCCHHHHHHHHHHHHcCCCCcCHHHHHHHH--CCCHHHHHHHHHHHHHCCCEEEecCCCCCCcEEEEEec
Confidence 5789999999999999999999999999999999999999 99999999999999999999999999999999999999
Q ss_pred cccCCC
Q 026766 85 FEPSKE 90 (233)
Q Consensus 85 lePs~e 90 (233)
|+||+|
T Consensus 85 l~Ps~e 90 (91)
T 2dk5_A 85 LSGPSS 90 (91)
T ss_dssp SCCCCC
T ss_pred cCcCCC
Confidence 999987
No 2
>2yu3_A DNA-directed RNA polymerase III 39 kDa polypeptide F variant; winged helix domain, RNA polymerase III C39 subunit, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.88 E-value=5e-23 Score=158.17 Aligned_cols=73 Identities=29% Similarity=0.551 Sum_probs=70.7
Q ss_pred CCCCCCCCCCCCCCChHHHHHHHHHHhhCCCcccHHHHHHHhhcCCChHHHHHHHHHHHhCCCceeeecccCCCe
Q 026766 3 KRKRPDSNAPSDSLTDHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVVNIHSKGK 77 (233)
Q Consensus 3 ~~~~~~~~~~~~~L~~~e~lVy~~I~~aG~~GIw~~dik~~t~~~l~~~~v~k~LK~Le~k~lIK~vksV~~~~r 77 (233)
+.++++.+.++++|+++|++||++|++|||+|||++||++++ |||+++|+|+||.||+++|||+|++|++++|
T Consensus 22 ~~~~~~~a~k~~~Lt~~E~lVy~~I~~aGn~GIw~kdL~~~t--nL~~~~vtkiLK~LE~k~lIK~Vksv~~~~~ 94 (95)
T 2yu3_A 22 RIKDSQNAGKMKGSDNQEKLVYQIIEDAGNKGIWSRDVRYKS--NLPLTEINKILKNLESKKLIKAVKSVSGPSS 94 (95)
T ss_dssp EECCSSSCCCCCSCSHHHHHHHHHHHHHTTSCEEHHHHHHHH--TCCHHHHHHHHHHHHHHTSEEEECCSCSSSC
T ss_pred EEeCHHHHhhhcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHh--CCCHHHHHHHHHHHHhCCCEEEecCccCCCC
Confidence 567899999999999999999999999999999999999999 9999999999999999999999999999876
No 3
>1sd4_A Penicillinase repressor; BLAI, MECI, methicillin, B-lactam, DNA binding PR; 2.00A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1xsd_A
Probab=98.57 E-value=1.4e-06 Score=66.69 Aligned_cols=114 Identities=16% Similarity=0.227 Sum_probs=77.0
Q ss_pred CCCCChHHHHHHHHHHhhCCCcccHHHHHHHhhc--CCChHHHHHHHHHHHhCCCceeeecccCCCeeeEEeeccccCCC
Q 026766 13 SDSLTDHERLIYDVIRSKQDMGIWTRDMKRELRV--NLPDNIVTKSIKSLQNKSLIKEVVNIHSKGKKHLMAVEFEPSKE 90 (233)
Q Consensus 13 ~~~L~~~e~lVy~~I~~aG~~GIw~~dik~~t~~--~l~~~~v~k~LK~Le~k~lIK~vksV~~~~rK~Yml~~lePs~e 90 (233)
..+||+.|..|+.+|-+.| |+.+++|...++. ++..++|++.|+.||+||||.+.++ .++++|.+.
T Consensus 5 ~~~Lt~~q~~vL~~L~~~~--~~t~~el~~~l~~~~~~~~~Tvt~~l~rLe~kGlv~R~~~---~r~~~~~~~------- 72 (126)
T 1sd4_A 5 QVEISMAEWDVMNIIWDKK--SVSANEIVVEIQKYKEVSDKTIRTLITRLYKKEIIKRYKS---ENIYFYSSN------- 72 (126)
T ss_dssp CCCCCHHHHHHHHHHHHSS--SEEHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTSEEEEEE---TTEEEEEEC-------
T ss_pred CCCCCHHHHHHHHHHHhcC--CCCHHHHHHHHhhcCCCChhhHHHHHHHHHHCCceEEEeC---CCeEEEEEe-------
Confidence 4579999999999999865 6999999999922 2689999999999999999999885 345555431
Q ss_pred cccCCcccCCCCCHHHHHHHHHHHHHHhhhCCCCCHHHHHHHHHHhCCcccccCHHHHHHHHHHH
Q 026766 91 ISGGAWYSEGSLDTEFIKVVKSQCLKQIIKLKVATLEGISDSIKRSGAFKVDLTKQQIEEIVRAL 155 (233)
Q Consensus 91 iTGG~wy~d~e~D~efI~~l~~~~~~~i~~~~~~T~~~I~~~I~~~~i~~~~Ls~~di~~il~~L 155 (233)
+|.| +.+.......+.+.-.-....+...+-+. ..||.+|++++.+.|
T Consensus 73 ~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~ls~ee~~~l~~~L 120 (126)
T 1sd4_A 73 IKED-------------DIKMKTAKTFLNKLYGGDMKSLVLNFAKN----EELNNKEIEELRDIL 120 (126)
T ss_dssp SCHH-------------HHHHHHHHHHHHHHHTTCHHHHHHHHHHT----TCSCHHHHHHHHHHH
T ss_pred cCHH-------------HHHHHHHHHHHHHHHCCCHHHHHHHHHhc----CCCCHHHHHHHHHHH
Confidence 1222 22333333333322122344444444332 258899998888776
No 4
>3eco_A MEPR; mutlidrug efflux pump regulator winged helix-turn-helix motif, DNA-binding, transcription, transcription regulation; 2.40A {Staphylococcus aureus} SCOP: a.4.5.0
Probab=98.27 E-value=3.7e-06 Score=64.79 Aligned_cols=66 Identities=18% Similarity=0.293 Sum_probs=58.0
Q ss_pred CCCChHHHHHHHHHHhhCCCcccHHHHHHHhhcCCChHHHHHHHHHHHhCCCceeeecccCCCeeeEE
Q 026766 14 DSLTDHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVVNIHSKGKKHLM 81 (233)
Q Consensus 14 ~~L~~~e~lVy~~I~~aG~~GIw~~dik~~t~~~l~~~~v~k~LK~Le~k~lIK~vksV~~~~rK~Ym 81 (233)
-+|+..|..|+.+|...|..|+..++|...+ +++..+++++|+.||++|||...++-.+++.+.+-
T Consensus 27 ~~lt~~~~~vL~~l~~~~~~~~t~~ela~~l--~~~~~tvs~~l~~Le~~Gli~r~~~~~D~R~~~~~ 92 (139)
T 3eco_A 27 FDITNEQGHTLGYLYAHQQDGLTQNDIAKAL--QRTGPTVSNLLRNLERKKLIYRYVDAQDTRRKNIG 92 (139)
T ss_dssp GTCCHHHHHHHHHHHHSTTTCEEHHHHHHHH--TCCHHHHHHHHHHHHHTTSEEEEECCC--CCEEEE
T ss_pred cCCCHHHHHHHHHHHhcCCCCcCHHHHHHHh--CCCcccHHHHHHHHHHCCCEeecCCCCCCCeeeeE
Confidence 4799999999999999988899999999999 99999999999999999999999888765554443
No 5
>3bro_A Transcriptional regulator; helix_TURN_helix, multiple antibiotic resistance protein (MA structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.04A {Oenococcus oeni} SCOP: a.4.5.28
Probab=98.23 E-value=5.9e-06 Score=63.50 Aligned_cols=65 Identities=20% Similarity=0.299 Sum_probs=57.9
Q ss_pred CCCChHHHHHHHHHHhhCCCcccHHHHHHHhhcCCChHHHHHHHHHHHhCCCceeeecccCCCeeeE
Q 026766 14 DSLTDHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVVNIHSKGKKHL 80 (233)
Q Consensus 14 ~~L~~~e~lVy~~I~~aG~~GIw~~dik~~t~~~l~~~~v~k~LK~Le~k~lIK~vksV~~~~rK~Y 80 (233)
-+|+..|..|+.+|...++.|+..++|.+.+ +++..+++++|+.||++|||...++-.+++.+.+
T Consensus 30 ~~lt~~~~~iL~~l~~~~~~~~~~~ela~~l--~~~~~tvs~~l~~Le~~Gli~r~~~~~d~R~~~i 94 (141)
T 3bro_A 30 YDLTGTQMTIIDYLSRNKNKEVLQRDLESEF--SIKSSTATVLLQRMEIKKLLYRKVSGKDSRQKCL 94 (141)
T ss_dssp TTCCHHHHHHHHHHHHTTTSCCBHHHHHHHH--TCCHHHHHHHHHHHHHTTSEEEEECSSCTTSEEE
T ss_pred cCCCHHHHHHHHHHHHCCCCCcCHHHHHHHH--CCCcchHHHHHHHHHHCCCEEeeCCCcCCCeeee
Confidence 4699999999999999987799999999999 9999999999999999999999888776544443
No 6
>1okr_A MECI, methicillin resistance regulatory protein MECI; bacterial antibiotic resistance, MECI protein, transcriptional regulatory element; 2.4A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1sax_A 1sd7_A 2d45_A 1sd6_A
Probab=98.19 E-value=3.2e-05 Score=58.82 Aligned_cols=61 Identities=13% Similarity=0.154 Sum_probs=53.5
Q ss_pred CCCCChHHHHHHHHHHhhCCCcccHHHHHHHhhcC----CChHHHHHHHHHHHhCCCceeeecccCCCeeeE
Q 026766 13 SDSLTDHERLIYDVIRSKQDMGIWTRDMKRELRVN----LPDNIVTKSIKSLQNKSLIKEVVNIHSKGKKHL 80 (233)
Q Consensus 13 ~~~L~~~e~lVy~~I~~aG~~GIw~~dik~~t~~~----l~~~~v~k~LK~Le~k~lIK~vksV~~~~rK~Y 80 (233)
+.+|++.|..|+.+|... .++.+++|...+ + ++.++|++.|+.|+++|||.+.++ .++.+|
T Consensus 5 ~~~lt~~~~~vL~~l~~~--~~~t~~ela~~l--~~~~~~s~~tv~~~l~~L~~~Glv~r~~~---~rr~~~ 69 (123)
T 1okr_A 5 TYEISSAEWEVMNIIWMK--KYASANNIIEEI--QMQKDWSPKTIRTLITRLYKKGFIDRKKD---NKIFQY 69 (123)
T ss_dssp CCCCCHHHHHHHHHHHHH--SSEEHHHHHHHH--HHHCCCCHHHHHHHHHHHHHHTSEEEEEE---TTEEEE
T ss_pred cccCCHHHHHHHHHHHhC--CCcCHHHHHHHH--hccCCCcHhhHHHHHHHHHHCCCeEEEec---CCeEEE
Confidence 678999999999999884 469999999999 6 889999999999999999999886 355555
No 7
>2g9w_A Conserved hypothetical protein; DNA-binding domain, bacterial transcription repressor, DNA B protein; 1.80A {Mycobacterium tuberculosis} SCOP: a.4.5.39
Probab=98.13 E-value=2.6e-05 Score=61.47 Aligned_cols=62 Identities=21% Similarity=0.282 Sum_probs=52.1
Q ss_pred CCCCChHHHHHHHHHHhhCCCcccHHHHHHHhhcC----CChHHHHHHHHHHHhCCCceeeecccCCCeeeE
Q 026766 13 SDSLTDHERLIYDVIRSKQDMGIWTRDMKRELRVN----LPDNIVTKSIKSLQNKSLIKEVVNIHSKGKKHL 80 (233)
Q Consensus 13 ~~~L~~~e~lVy~~I~~aG~~GIw~~dik~~t~~~----l~~~~v~k~LK~Le~k~lIK~vksV~~~~rK~Y 80 (233)
+.+||+.|..|+.+|-.. +.++.+++|...+ + ++.++|++.|+.||++|||.+.++ .++.+|
T Consensus 4 ~~~lt~~e~~vL~~L~~~-~~~~t~~el~~~l--~~~~~~~~~Tvt~~l~rLe~kGlv~r~~~---~r~~~~ 69 (138)
T 2g9w_A 4 LTRLGDLERAVMDHLWSR-TEPQTVRQVHEAL--SARRDLAYTTVMAVLQRLAKKNLVLQIRD---DRAHRY 69 (138)
T ss_dssp GGGCCHHHHHHHHHHHTC-SSCEEHHHHHHHH--TTTCCCCHHHHHHHHHHHHHTTSEEEEC------CCEE
T ss_pred cccCCHHHHHHHHHHHhc-CCCCCHHHHHHHH--hccCCCCHHHHHHHHHHHHHCCCEEEEec---CCeEEE
Confidence 568999999999999885 2479999999999 6 899999999999999999999874 344455
No 8
>2frh_A SARA, staphylococcal accessory regulator A; winged-helix protein, divalent metal binding, transcription; 2.50A {Staphylococcus aureus} SCOP: a.4.5.28 PDB: 2fnp_A 1fzp_D
Probab=98.07 E-value=8.1e-06 Score=63.22 Aligned_cols=65 Identities=18% Similarity=0.241 Sum_probs=57.4
Q ss_pred CCCChHHHHHHHHHHhhCCCcccHHHHHHHhhcCCChHHHHHHHHHHHhCCCceeeecccCCCeeeE
Q 026766 14 DSLTDHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVVNIHSKGKKHL 80 (233)
Q Consensus 14 ~~L~~~e~lVy~~I~~aG~~GIw~~dik~~t~~~l~~~~v~k~LK~Le~k~lIK~vksV~~~~rK~Y 80 (233)
-+|+..|..|+.+|...+..|+.+++|...+ +++..+++++|+.||++|||.+.++-.+++.+.+
T Consensus 33 ~~lt~~q~~vL~~l~~~~~~~~t~~eLa~~l--~~~~~tvs~~l~~Le~~Glv~r~~~~~D~R~~~i 97 (127)
T 2frh_A 33 FSISFEEFAVLTYISENKEKEYYLKDIINHL--NYKQPQVVKAVKILSQEDYFDKKRNEHDERTVLI 97 (127)
T ss_dssp TCCCHHHHHHHHHHHHTCCSEEEHHHHHHHS--SSHHHHHHHHHHHHHHTTSSCCBCCSSSSCCCEE
T ss_pred cCCCHHHHHHHHHHHhccCCCcCHHHHHHHH--CCCHHHHHHHHHHHHHCCCEEecCCCCCCCeeEE
Confidence 4799999999999998766789999999999 9999999999999999999999888776444433
No 9
>3k0l_A Repressor protein; helix-turn-helix, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.35A {Acinetobacter SP}
Probab=98.05 E-value=1.5e-05 Score=63.41 Aligned_cols=65 Identities=8% Similarity=0.063 Sum_probs=57.8
Q ss_pred CCCChHHHHHHHHHHhhCCCcccHHHHHHHhhcCCChHHHHHHHHHHHhCCCceeeecccCCCeeeEEe
Q 026766 14 DSLTDHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVVNIHSKGKKHLMA 82 (233)
Q Consensus 14 ~~L~~~e~lVy~~I~~aG~~GIw~~dik~~t~~~l~~~~v~k~LK~Le~k~lIK~vksV~~~~rK~Yml 82 (233)
-+|+..|..|+.+|...| |+.+++|...+ +++..+|+++|+.||++|||...++-.+++.+.+.|
T Consensus 42 ~glt~~q~~iL~~l~~~~--~~t~~eLa~~l--~~~~~tvs~~l~~Le~~Glv~r~~~~~DrR~~~l~L 106 (162)
T 3k0l_A 42 LEISLPQFTALSVLAAKP--NLSNAKLAERS--FIKPQSANKILQDLLANGWIEKAPDPTHGRRILVTV 106 (162)
T ss_dssp TTCCHHHHHHHHHHHHCT--TCCHHHHHHHH--TSCGGGHHHHHHHHHHTTSEEEEECCSSSCCEEEEE
T ss_pred cCCCHHHHHHHHHHHHCC--CCCHHHHHHHH--CCCHHHHHHHHHHHHHCcCeEecCCCCcCCeeEeEE
Confidence 479999999999998876 69999999999 999999999999999999999999988766555543
No 10
>3u2r_A Regulatory protein MARR; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, helix-turn-helix; 2.20A {Planctomyces limnophilus}
Probab=98.04 E-value=7.6e-06 Score=65.50 Aligned_cols=62 Identities=16% Similarity=0.175 Sum_probs=54.0
Q ss_pred CCCChHHHHHHHHHHhhCCCcccHHHHHHHhhcCCChHHHHHHHHHHHhCCCceeeecccCCCe
Q 026766 14 DSLTDHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVVNIHSKGK 77 (233)
Q Consensus 14 ~~L~~~e~lVy~~I~~aG~~GIw~~dik~~t~~~l~~~~v~k~LK~Le~k~lIK~vksV~~~~r 77 (233)
-+|+..|..|+.+|...|+.|+..++|...+ +++..+|+++|+.||++|||....+-.+++.
T Consensus 42 ~glt~~q~~vL~~l~~~~~~~~t~~eLa~~l--~~~~~tvs~~l~~Le~~Glv~r~~~~~DrR~ 103 (168)
T 3u2r_A 42 FELSAQQYNTLRLLRSVHPEGMATLQIADRL--ISRAPDITRLIDRLDDRGLVLRTRKPENRRV 103 (168)
T ss_dssp TTCCHHHHHHHHHHHHHTTSCEEHHHHHHHC-----CTHHHHHHHHHHHTTSEEEEEETTEEEE
T ss_pred cCCCHHHHHHHHHHHhcCCCCcCHHHHHHHH--CCChhhHHHHHHHHHHCCCEeecCCCCCCCe
Confidence 4799999999999999988999999999999 9999999999999999999999888776433
No 11
>3bdd_A Regulatory protein MARR; putative multiple antibiotic-resistance repressor, structura genomics, joint center for structural genomics, JCSG; 2.20A {Streptococcus suis}
Probab=98.01 E-value=2.8e-05 Score=59.54 Aligned_cols=64 Identities=13% Similarity=0.163 Sum_probs=56.7
Q ss_pred CCChHHHHHHHHHHhhCCCcccHHHHHHHhhcCCChHHHHHHHHHHHhCCCceeeecccCCCeeeEEe
Q 026766 15 SLTDHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVVNIHSKGKKHLMA 82 (233)
Q Consensus 15 ~L~~~e~lVy~~I~~aG~~GIw~~dik~~t~~~l~~~~v~k~LK~Le~k~lIK~vksV~~~~rK~Yml 82 (233)
+|+..+..|+..|...| ++..++|.+.+ ++++.+|++.|+.||++|+|...++-.+++.+.|.|
T Consensus 28 ~l~~~~~~iL~~l~~~~--~~~~~ela~~l--~is~~~vs~~l~~L~~~gli~~~~~~~d~r~~~~~l 91 (142)
T 3bdd_A 28 GISLTRYSILQTLLKDA--PLHQLALQERL--QIDRAAVTRHLKLLEESGYIIRKRNPDNQREVLVWP 91 (142)
T ss_dssp SSCHHHHHHHHHHHHHC--SBCHHHHHHHH--TCCHHHHHHHHHHHHHTTSEEEEECSSSTTCEEEEE
T ss_pred CCCHHHHHHHHHHHhCC--CCCHHHHHHHH--CCCHHHHHHHHHHHHHCCCEEecCCCCCCCeeEEEE
Confidence 68999999999998876 59999999999 999999999999999999999988877666655543
No 12
>1p6r_A Penicillinase repressor; transcription regulation, DNA-binding, winged helix protein, bacterial resistance to antibiotics; NMR {Bacillus licheniformis} SCOP: a.4.5.39 PDB: 2p7c_B
Probab=98.00 E-value=3.2e-05 Score=55.50 Aligned_cols=57 Identities=18% Similarity=0.210 Sum_probs=50.0
Q ss_pred CCCCChHHHHHHHHHHhhCCCcccHHHHHHHhhc--CCChHHHHHHHHHHHhCCCceeeec
Q 026766 13 SDSLTDHERLIYDVIRSKQDMGIWTRDMKRELRV--NLPDNIVTKSIKSLQNKSLIKEVVN 71 (233)
Q Consensus 13 ~~~L~~~e~lVy~~I~~aG~~GIw~~dik~~t~~--~l~~~~v~k~LK~Le~k~lIK~vks 71 (233)
+.+||+.|..|+.+|.+ +.++..++|...++. +++.++|++.|+.|+++|+|...++
T Consensus 4 ~~~lt~~e~~vL~~L~~--~~~~t~~ei~~~l~~~~~~s~~Tv~~~l~rL~~kGlv~r~~~ 62 (82)
T 1p6r_A 4 IPQISDAELEVMKVIWK--HSSINTNEVIKELSKTSTWSPKTIQTMLLRLIKKGALNHHKE 62 (82)
T ss_dssp CCCCCHHHHHHHHHHHT--SSSEEHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTSEEEEEE
T ss_pred cCCCCHHHHHHHHHHHc--CCCCCHHHHHHHHhhcCCccHHHHHHHHHHHHHCCCeEEEec
Confidence 56899999999999988 447999999999922 3789999999999999999998764
No 13
>1jgs_A Multiple antibiotic resistance protein MARR; transcription regulation, DNA-binding, repressor, transcription; HET: SAL; 2.30A {Escherichia coli} SCOP: a.4.5.28
Probab=98.00 E-value=3e-05 Score=59.39 Aligned_cols=63 Identities=17% Similarity=0.167 Sum_probs=55.0
Q ss_pred CCCChHHHHHHHHHHhhCCCcccHHHHHHHhhcCCChHHHHHHHHHHHhCCCceeeecccCCCeeeE
Q 026766 14 DSLTDHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVVNIHSKGKKHL 80 (233)
Q Consensus 14 ~~L~~~e~lVy~~I~~aG~~GIw~~dik~~t~~~l~~~~v~k~LK~Le~k~lIK~vksV~~~~rK~Y 80 (233)
.+|+..|..|+..|...| |+..++|...+ ++++.+++++|+.||++|||....+-.+++.+.+
T Consensus 30 ~~lt~~~~~iL~~l~~~~--~~~~~~la~~l--~~~~~tvs~~l~~L~~~gli~r~~~~~d~R~~~~ 92 (138)
T 1jgs_A 30 LDITAAQFKVLCSIRCAA--CITPVELKKVL--SVDLGALTRMLDRLVCKGWVERLPNPNDKRGVLV 92 (138)
T ss_dssp TTSCHHHHHHHHHHHHHS--SBCHHHHHHHH--TCCHHHHHHHHHHHHHTTSEEEEECTTCSSCEEE
T ss_pred cCCCHHHHHHHHHHHhcC--CCCHHHHHHHH--CCChHHHHHHHHHHHHCCCEEecCCcccCceeEe
Confidence 479999999999998765 69999999999 9999999999999999999999887776544444
No 14
>1lj9_A Transcriptional regulator SLYA; HTH DNA binding protein, structural genomics, PSI, protein structure initiative; 1.60A {Enterococcus faecalis} SCOP: a.4.5.28
Probab=98.00 E-value=2.3e-05 Score=60.41 Aligned_cols=64 Identities=19% Similarity=0.242 Sum_probs=56.0
Q ss_pred CCCChHHHHHHHHHHhhCCCcccHHHHHHHhhcCCChHHHHHHHHHHHhCCCceeeecccCCCeeeEE
Q 026766 14 DSLTDHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVVNIHSKGKKHLM 81 (233)
Q Consensus 14 ~~L~~~e~lVy~~I~~aG~~GIw~~dik~~t~~~l~~~~v~k~LK~Le~k~lIK~vksV~~~~rK~Ym 81 (233)
.+|+..+..|+..|...| |+..++|...+ ++++.+|+++|+.||++|+|...++-.+++.+.|-
T Consensus 25 ~~lt~~~~~iL~~l~~~~--~~t~~~la~~l--~~s~~~vs~~l~~Le~~gli~r~~~~~d~R~~~~~ 88 (144)
T 1lj9_A 25 LSLTRGQYLYLVRVCENP--GIIQEKIAELI--KVDRTTAARAIKRLEEQGFIYRQEDASNKKIKRIY 88 (144)
T ss_dssp GTCTTTHHHHHHHHHHST--TEEHHHHHHHH--TCCHHHHHHHHHHHHHTTSEEEEECSSCTTCEEEE
T ss_pred cCCCHHHHHHHHHHHHCc--CcCHHHHHHHH--CCCHhHHHHHHHHHHHCCCEEeecCCCCCceeeeE
Confidence 368999999999998865 79999999999 99999999999999999999998887765555443
No 15
>3bj6_A Transcriptional regulator, MARR family; helix-turn-helix, trasnscription regulator, STR genomics, PSI-2, protein structure initiative; 2.01A {Silicibacter pomeroyi dss-3}
Probab=97.99 E-value=2.5e-05 Score=60.81 Aligned_cols=65 Identities=14% Similarity=0.229 Sum_probs=56.5
Q ss_pred CCCChHHHHHHHHHHhhCCCcccHHHHHHHhhcCCChHHHHHHHHHHHhCCCceeeecccCCCeeeEEe
Q 026766 14 DSLTDHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVVNIHSKGKKHLMA 82 (233)
Q Consensus 14 ~~L~~~e~lVy~~I~~aG~~GIw~~dik~~t~~~l~~~~v~k~LK~Le~k~lIK~vksV~~~~rK~Yml 82 (233)
.+|+..|..|+.+|...| |+..++|.+.+ +++..+++++|+.||++|||....+-..++.+.+-|
T Consensus 36 ~~lt~~~~~iL~~l~~~~--~~t~~ela~~l--~~~~~~vs~~l~~Le~~Glv~r~~~~~d~R~~~~~l 100 (152)
T 3bj6_A 36 EGVTVGQRAILEGLSLTP--GATAPQLGAAL--QMKRQYISRILQEVQRAGLIERRTNPEHARSHRYWL 100 (152)
T ss_dssp TTCCHHHHHHHHHHHHST--TEEHHHHHHHH--TCCHHHHHHHHHHHHHTTSEEEECCSSSTTSCEEEE
T ss_pred cCCCHHHHHHHHHHHhCC--CCCHHHHHHHH--CCCHHHHHHHHHHHHHCCCeeecCCcccccceeeEE
Confidence 368999999999998866 79999999999 999999999999999999999988877655554433
No 16
>1sfx_A Conserved hypothetical protein AF2008; structural genomics, HTH MOT protein structure initiative, midwest center for structural genomics; 1.55A {Archaeoglobus fulgidus} SCOP: a.4.5.50
Probab=97.99 E-value=4e-05 Score=56.07 Aligned_cols=54 Identities=20% Similarity=0.432 Sum_probs=49.6
Q ss_pred CCChHHHHHHHHHHhhCCCcccHHHHHHHhhcCCChHHHHHHHHHHHhCCCceeeecc
Q 026766 15 SLTDHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVVNI 72 (233)
Q Consensus 15 ~L~~~e~lVy~~I~~aG~~GIw~~dik~~t~~~l~~~~v~k~LK~Le~k~lIK~vksV 72 (233)
+|++.+..|+.+|...| ++..++|.+.+ +++..+|+++|+.|+++|+|...+..
T Consensus 17 ~l~~~~~~il~~l~~~~--~~s~~ela~~l--~is~~tv~~~l~~L~~~glv~~~~~~ 70 (109)
T 1sfx_A 17 SFKPSDVRIYSLLLERG--GMRVSEIAREL--DLSARFVRDRLKVLLKRGFVRREIVE 70 (109)
T ss_dssp CCCHHHHHHHHHHHHHC--CBCHHHHHHHH--TCCHHHHHHHHHHHHHTTSEEEEEEE
T ss_pred CCCHHHHHHHHHHHHcC--CCCHHHHHHHH--CCCHHHHHHHHHHHHHCCCEEEEeec
Confidence 68899999999998765 49999999999 99999999999999999999998776
No 17
>2nnn_A Probable transcriptional regulator; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa}
Probab=97.98 E-value=2e-05 Score=60.30 Aligned_cols=62 Identities=10% Similarity=0.102 Sum_probs=54.5
Q ss_pred CCChHHHHHHHHHHhhCCCcccHHHHHHHhhcCCChHHHHHHHHHHHhCCCceeeecccCCCeeeE
Q 026766 15 SLTDHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVVNIHSKGKKHL 80 (233)
Q Consensus 15 ~L~~~e~lVy~~I~~aG~~GIw~~dik~~t~~~l~~~~v~k~LK~Le~k~lIK~vksV~~~~rK~Y 80 (233)
+|+..|..|+.+|...| |+..++|...+ +++..++++.|+.||++|+|....+-.+++.+.|
T Consensus 35 ~l~~~~~~iL~~l~~~~--~~t~~ela~~l--~~~~~tvs~~l~~L~~~glv~r~~~~~d~R~~~~ 96 (140)
T 2nnn_A 35 GLTPTQWAALVRLGETG--PCPQNQLGRLT--AMDAATIKGVVERLDKRGLIQRSADPDDGRRLLV 96 (140)
T ss_dssp CCCHHHHHHHHHHHHHS--SBCHHHHHHHT--TCCHHHHHHHHHHHHHTTCEEEEEETTEEEEEEE
T ss_pred CCCHHHHHHHHHHHHcC--CCCHHHHHHHH--CCCHHHHHHHHHHHHHCCCEEeeCCCCCCCeeee
Confidence 89999999999998877 79999999999 9999999999999999999999877665444333
No 18
>3ech_A MEXR, multidrug resistance operon repressor; winged helix, helix-turn-helix, protein-peptide complex; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28 PDB: 1lnw_A 3mex_A
Probab=97.98 E-value=1.1e-05 Score=62.64 Aligned_cols=63 Identities=19% Similarity=0.359 Sum_probs=46.3
Q ss_pred CCCChHHHHHHHHHHhhCCCcccHHHHHHHhhcCCChHHHHHHHHHHHhCCCceeeecccCCCeeeE
Q 026766 14 DSLTDHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVVNIHSKGKKHL 80 (233)
Q Consensus 14 ~~L~~~e~lVy~~I~~aG~~GIw~~dik~~t~~~l~~~~v~k~LK~Le~k~lIK~vksV~~~~rK~Y 80 (233)
-+|+..|..|+.+|...| |+..++|...+ ++++.++++.|+.||++|||...++-.+++.+.+
T Consensus 33 ~~lt~~~~~vL~~l~~~~--~~t~~eLa~~l--~~~~~tvs~~l~~L~~~Glv~r~~~~~DrR~~~~ 95 (142)
T 3ech_A 33 LDLTPPDVHVLKLIDEQR--GLNLQDLGRQM--CRDKALITRKIRELEGRNLVRRERNPSDQRSFQL 95 (142)
T ss_dssp CCCCHHHHHHHHHHHHTT--TCCHHHHHHHH--C---CHHHHHHHHHHHTTSEEC----------CC
T ss_pred CCCCHHHHHHHHHHHhCC--CcCHHHHHHHh--CCCHHHHHHHHHHHHHCCCEeeccCCCCCCeeee
Confidence 479999999999999876 69999999999 9999999999999999999999888776544443
No 19
>2rdp_A Putative transcriptional regulator MARR; PFAM PF01047, winged-helix binding motif, structural genomics, PSI-2; 2.30A {Geobacillus stearothermophilus}
Probab=97.98 E-value=2.8e-05 Score=60.37 Aligned_cols=63 Identities=10% Similarity=0.186 Sum_probs=53.6
Q ss_pred CCCChHHHHHHHHHHhhCCCcccHHHHHHHhhcCCChHHHHHHHHHHHhCCCceeeecccCCCeeeE
Q 026766 14 DSLTDHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVVNIHSKGKKHL 80 (233)
Q Consensus 14 ~~L~~~e~lVy~~I~~aG~~GIw~~dik~~t~~~l~~~~v~k~LK~Le~k~lIK~vksV~~~~rK~Y 80 (233)
.+|+..|..|+.+|...| ++..++|.+.+ +++..+|+++|+.||++|||...++-.+++.+.|
T Consensus 38 ~~l~~~~~~iL~~l~~~~--~~t~~ela~~l--~~~~~tvs~~l~~Le~~Glv~r~~~~~d~R~~~~ 100 (150)
T 2rdp_A 38 YPITPPQFVALQWLLEEG--DLTVGELSNKM--YLACSTTTDLVDRMERNGLVARVRDEHDRRVVRI 100 (150)
T ss_dssp SSSCHHHHHHHHHHHHHC--SBCHHHHHHHH--TCCHHHHHHHHHHHHHTTSEEEEECCC---CEEE
T ss_pred CCCCHHHHHHHHHHHHcC--CCCHHHHHHHH--CCCchhHHHHHHHHHHCCCeeecCCCCCcceeEe
Confidence 479999999999999876 69999999999 9999999999999999999999887765444433
No 20
>3oop_A LIN2960 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; 1.78A {Listeria innocua}
Probab=97.97 E-value=2.5e-05 Score=60.46 Aligned_cols=64 Identities=14% Similarity=0.151 Sum_probs=53.5
Q ss_pred CCCChHHHHHHHHHHhhCCCcccHHHHHHHhhcCCChHHHHHHHHHHHhCCCceeeecccCCCeeeEE
Q 026766 14 DSLTDHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVVNIHSKGKKHLM 81 (233)
Q Consensus 14 ~~L~~~e~lVy~~I~~aG~~GIw~~dik~~t~~~l~~~~v~k~LK~Le~k~lIK~vksV~~~~rK~Ym 81 (233)
.+|+..|..|+.+|...| |+..++|...+ +++..++++.|+.||++|||...++-.+++.+.+-
T Consensus 33 ~~lt~~~~~iL~~l~~~~--~~t~~eLa~~l--~~~~~~vs~~l~~L~~~Glv~r~~~~~D~R~~~~~ 96 (143)
T 3oop_A 33 YDVTPEQWSVLEGIEANE--PISQKEIALWT--KKDTPTVNRIVDVLLRKELIVREISTEDRRISLLS 96 (143)
T ss_dssp SSSCHHHHHHHHHHHHHS--SEEHHHHHHHH--TCCHHHHHHHHHHHHHTTSEEEEC----CCSCEEE
T ss_pred CCCCHHHHHHHHHHHHcC--CcCHHHHHHHH--CCCHhhHHHHHHHHHHCCCeeccCCCccCceeeee
Confidence 479999999999998874 69999999999 99999999999999999999999888765555553
No 21
>2vn2_A DNAD, chromosome replication initiation protein; DNA replication, primosome; 2.3A {Geobacillus kaustophilus HTA426}
Probab=97.97 E-value=1.1e-05 Score=63.43 Aligned_cols=70 Identities=11% Similarity=0.101 Sum_probs=54.0
Q ss_pred CCChHHHHHHHHHHhh---CCCcccHHHHHHHhhcCCChHHHHHHHHHHHhCCCceeeecccCCCeeeEEeecccc
Q 026766 15 SLTDHERLIYDVIRSK---QDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVVNIHSKGKKHLMAVEFEP 87 (233)
Q Consensus 15 ~L~~~e~lVy~~I~~a---G~~GIw~~dik~~t~~~l~~~~v~k~LK~Le~k~lIK~vksV~~~~rK~Yml~~leP 87 (233)
+|++.|..||-.|... |+.++...+|.+++ +++.++|+++|+.|+++|+|....+-... .++.-.|+|.|
T Consensus 29 gLt~~e~~vll~L~~~~~~~~~~ps~~~LA~~l--~~s~~~V~~~l~~Le~kGlI~~~~~~~~~-g~~~~~Ydl~p 101 (128)
T 2vn2_A 29 GLGEGELVLLLHMQSFFEEGVLFPTPAELAERM--TVSAAECMEMVRRLLQKGMIAIEEHTDEQ-GIRNEKYTLEP 101 (128)
T ss_dssp TCCHHHHHHHHHHHHHHTTTCSSCCHHHHHHTS--SSCHHHHHHHHHHHHHTTSSEECC-----------CEECHH
T ss_pred CCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHH--CcCHHHHHHHHHHHHHCCCEEEEeEECCC-CcEEEEEehHH
Confidence 7999999999999865 66779999999999 99999999999999999999987775543 44556677755
No 22
>3nrv_A Putative transcriptional regulator (MARR/EMRR FAM; PSI-2, protein structure initiati structural genomics; HET: MSE; 2.00A {Acinetobacter SP}
Probab=97.97 E-value=1.7e-05 Score=61.61 Aligned_cols=63 Identities=19% Similarity=0.205 Sum_probs=50.1
Q ss_pred CCChHHHHHHHHHHhhCCCcccHHHHHHHhhcCCChHHHHHHHHHHHhCCCceeeecccCCCeeeEE
Q 026766 15 SLTDHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVVNIHSKGKKHLM 81 (233)
Q Consensus 15 ~L~~~e~lVy~~I~~aG~~GIw~~dik~~t~~~l~~~~v~k~LK~Le~k~lIK~vksV~~~~rK~Ym 81 (233)
+|+..|..|+..|...| |+..++|...+ ++++.++++.|+.||++|||...++-.+++.+.+-
T Consensus 37 ~l~~~~~~iL~~l~~~~--~~t~~ela~~l--~~~~~tvs~~l~~Le~~Glv~r~~~~~D~R~~~~~ 99 (148)
T 3nrv_A 37 GIGMTEWRIISVLSSAS--DCSVQKISDIL--GLDKAAVSRTVKKLEEKKYIEVNGHSEDKRTYAIN 99 (148)
T ss_dssp TCCHHHHHHHHHHHHSS--SBCHHHHHHHH--TCCHHHHHHHHHHHHHTTSEEC---------CCBE
T ss_pred CCCHHHHHHHHHHHcCC--CCCHHHHHHHH--CCCHHHHHHHHHHHHHCCCEEeecCCCCcceeEeE
Confidence 79999999999999887 79999999999 99999999999999999999998887765555443
No 23
>3e6m_A MARR family transcriptional regulator; APC88769, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; 2.20A {Silicibacter pomeroyi}
Probab=97.96 E-value=2.1e-05 Score=62.47 Aligned_cols=63 Identities=6% Similarity=0.134 Sum_probs=53.9
Q ss_pred CCChHHHHHHHHHHhhCCCcccHHHHHHHhhcCCChHHHHHHHHHHHhCCCceeeecccCCCeeeEE
Q 026766 15 SLTDHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVVNIHSKGKKHLM 81 (233)
Q Consensus 15 ~L~~~e~lVy~~I~~aG~~GIw~~dik~~t~~~l~~~~v~k~LK~Le~k~lIK~vksV~~~~rK~Ym 81 (233)
+|+..|..|+.+|...| |+.+++|...+ +++..++++.|+.||++|||...++-.+++.+.+-
T Consensus 50 glt~~q~~vL~~l~~~~--~~t~~eLa~~l--~~~~~~vs~~l~~Le~~Glv~r~~~~~DrR~~~~~ 112 (161)
T 3e6m_A 50 KLPTPKLRLLSSLSAYG--ELTVGQLATLG--VMEQSTTSRTVDQLVDEGLAARSISDADQRKRTVV 112 (161)
T ss_dssp TCCHHHHHHHHHHHHHS--EEEHHHHHHHT--TCCHHHHHHHHHHHHHTTSEEECC---CCCSCEEE
T ss_pred CCCHHHHHHHHHHHhCC--CCCHHHHHHHH--CCCHHHHHHHHHHHHHCCCEEeeCCcccCCeeEee
Confidence 68999999999999877 79999999999 99999999999999999999998888765555443
No 24
>3hsr_A HTH-type transcriptional regulator SARZ; helix-turn-helix, cysteine disulfide, MARR-family transcript regulator, DNA-binding; 1.90A {Staphylococcus aureus subsp} PDB: 3hse_A 3hrm_A 4gxo_A
Probab=97.96 E-value=1.2e-05 Score=62.46 Aligned_cols=65 Identities=12% Similarity=0.146 Sum_probs=51.5
Q ss_pred CCCChHHHHHHHHHHhhCCCcccHHHHHHHhhcCCChHHHHHHHHHHHhCCCceeeecccCCCeeeEEe
Q 026766 14 DSLTDHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVVNIHSKGKKHLMA 82 (233)
Q Consensus 14 ~~L~~~e~lVy~~I~~aG~~GIw~~dik~~t~~~l~~~~v~k~LK~Le~k~lIK~vksV~~~~rK~Yml 82 (233)
-+|+..|..|+.+|... .|+..++|.+.+ +++..+++++|+.||++|||...++-.+++.+.+.|
T Consensus 32 ~glt~~q~~vL~~l~~~--~~~t~~eLa~~l--~~~~~tvs~~l~~L~~~Glv~r~~~~~D~R~~~~~L 96 (140)
T 3hsr_A 32 YDLTYTGYIVLMAIEND--EKLNIKKLGERV--FLDSGTLTPLLKKLEKKDYVVRTREEKDERNLQISL 96 (140)
T ss_dssp GTCCHHHHHHHHHSCTT--CEEEHHHHHHHH--TCCHHHHHHHHHHHHHTTSEEEEC-------CEEEE
T ss_pred cCCCHHHHHHHHHHHHc--CCcCHHHHHHHH--CCChhhHHHHHHHHHHCCCeEecCCCCCcceeeeeE
Confidence 37999999999999764 479999999999 999999999999999999999999888755555543
No 25
>3r0a_A Putative transcriptional regulator; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.31A {Methanosarcina mazei}
Probab=97.96 E-value=3.5e-05 Score=59.97 Aligned_cols=71 Identities=18% Similarity=0.184 Sum_probs=57.7
Q ss_pred CCCChHHHHHHHHHHhhCCCcccHHHHHHHhhcCCChHHHHHHHHHHHhCCCceeeecccCCCeeeEEeecccc
Q 026766 14 DSLTDHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVVNIHSKGKKHLMAVEFEP 87 (233)
Q Consensus 14 ~~L~~~e~lVy~~I~~aG~~GIw~~dik~~t~~~l~~~~v~k~LK~Le~k~lIK~vksV~~~~rK~Yml~~leP 87 (233)
-+|++.|..||.+|.+++...+...+|.+++ +++.++|.|+|+.|+++|+|.+.+....++...| .|...|
T Consensus 22 ~gLt~~e~~il~~L~~~~~~~~t~~eLa~~l--~~s~sTV~r~L~~L~~~GlV~r~~~~~d~~~~~~-~y~~~~ 92 (123)
T 3r0a_A 22 LNLTKADLNVMKSFLNEPDRWIDTDALSKSL--KLDVSTVQRSVKKLHEKEILQRSQQNLDGGGYVY-IYKIYS 92 (123)
T ss_dssp HTCCHHHHHHHHHHHHSTTCCEEHHHHHHHH--TSCHHHHHHHHHHHHHTTSEEEEEEECTTSCEEE-EEEECC
T ss_pred cCCCHHHHHHHHHHHHCCCCCcCHHHHHHHH--CcCHHHHHHHHHHHHHCCCEEeeCCccCCCcceE-EEecCC
Confidence 3789999999999988765449999999999 9999999999999999999999876665444333 344444
No 26
>3jw4_A Transcriptional regulator, MARR/EMRR family; DNA-binding protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.10A {Clostridium acetobutylicum} SCOP: a.4.5.0
Probab=97.95 E-value=6.1e-06 Score=64.49 Aligned_cols=64 Identities=17% Similarity=0.269 Sum_probs=46.3
Q ss_pred CCCChHHHHHHHHHHhhCCCcccHHHHHHHhhcCCChHHHHHHHHHHHhCCCceeeecccCCCeee
Q 026766 14 DSLTDHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVVNIHSKGKKH 79 (233)
Q Consensus 14 ~~L~~~e~lVy~~I~~aG~~GIw~~dik~~t~~~l~~~~v~k~LK~Le~k~lIK~vksV~~~~rK~ 79 (233)
-+|+..|..|+.+|...++.|+.+++|...+ +++..+++++|+.||++|||...++-.+++.+.
T Consensus 37 ~glt~~q~~vL~~l~~~~~~~~t~~eLa~~l--~~~~~~vs~~l~~L~~~Glv~r~~~~~DrR~~~ 100 (148)
T 3jw4_A 37 LGLNSQQGRMIGYIYENQESGIIQKDLAQFF--GRRGASITSMLQGLEKKGYIERRIPENNARQKN 100 (148)
T ss_dssp TTCCHHHHHHHHHHHHHTTTCCCHHHHHHC--------CHHHHHHHHHHTTSBCCC--------CC
T ss_pred CCCCHHHHHHHHHHHhCCCCCCCHHHHHHHH--CCChhHHHHHHHHHHHCCCEEeeCCCCCchhhe
Confidence 3799999999999999987899999999999 999999999999999999999988877644433
No 27
>3g3z_A NMB1585, transcriptional regulator, MARR family; transcription factor, structur genomics, oxford protein production facility; 2.10A {Neisseria meningitidis serogroup B}
Probab=97.95 E-value=2.4e-05 Score=60.72 Aligned_cols=65 Identities=15% Similarity=0.181 Sum_probs=57.0
Q ss_pred CCCChHHHHHHHHHHhhCCCcccHHHHHHHhhcCCChHHHHHHHHHHHhCCCceeeecccCCCeeeEEe
Q 026766 14 DSLTDHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVVNIHSKGKKHLMA 82 (233)
Q Consensus 14 ~~L~~~e~lVy~~I~~aG~~GIw~~dik~~t~~~l~~~~v~k~LK~Le~k~lIK~vksV~~~~rK~Yml 82 (233)
.+|+..|..|+.+|...|. +..++|...+ +++..++++.|+.||++|||....+-.+++.+.+-|
T Consensus 27 ~~lt~~q~~iL~~l~~~~~--~t~~eLa~~l--~~~~~tvs~~l~~Le~~Glv~r~~~~~D~R~~~~~L 91 (145)
T 3g3z_A 27 QDLNYNLFAVLYTLATEGS--RTQKHIGEKW--SLPKQTVSGVCKTLAGQGLIEWQEGEQDRRKRLLSL 91 (145)
T ss_dssp TTCCHHHHHHHHHHHHHCS--BCHHHHHHHH--TCCHHHHHHHHHHHHHTTSEEECCCSSCGGGSCEEE
T ss_pred cCCCHHHHHHHHHHHHCCC--CCHHHHHHHH--CCCHHHHHHHHHHHHHCCCEeeccCCCCCceeeeeE
Confidence 4799999999999988874 9999999999 999999999999999999999988877655555533
No 28
>3cjn_A Transcriptional regulator, MARR family; silicibacter pomeroy structural genomics, PSI-2, protein structure initiative; 1.95A {Silicibacter pomeroyi dss-3}
Probab=97.95 E-value=3.3e-05 Score=61.00 Aligned_cols=64 Identities=11% Similarity=0.222 Sum_probs=54.3
Q ss_pred CCChHHHHHHHHHHhhCCCcccHHHHHHHhhcCCChHHHHHHHHHHHhCCCceeeecccCCCeeeEEe
Q 026766 15 SLTDHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVVNIHSKGKKHLMA 82 (233)
Q Consensus 15 ~L~~~e~lVy~~I~~aG~~GIw~~dik~~t~~~l~~~~v~k~LK~Le~k~lIK~vksV~~~~rK~Yml 82 (233)
+|+..|..|+.+|...| |+..++|...+ +++..+|+++|+.||++|||...++-..++.+.|-|
T Consensus 49 ~lt~~~~~iL~~l~~~~--~~t~~ela~~l--~is~~tvs~~l~~Le~~Gli~r~~~~~d~R~~~~~l 112 (162)
T 3cjn_A 49 GLSTAKMRALAILSAKD--GLPIGTLGIFA--VVEQSTLSRALDGLQADGLVRREVDSDDQRSSRVYL 112 (162)
T ss_dssp TCCHHHHHHHHHHHHSC--SEEHHHHHHHH--TCCHHHHHHHHHHHHHTTSEEEEEC--CCSSEEEEE
T ss_pred CCCHHHHHHHHHHHHCC--CCCHHHHHHHH--CCChhHHHHHHHHHHHCCCEEecCCCCCCCeeEEEE
Confidence 68999999999998765 69999999999 999999999999999999999988877655554443
No 29
>3bja_A Transcriptional regulator, MARR family, putative; NP_978771.1, putative MARR-like transcription regulator, MAR structural genomics; 2.38A {Bacillus cereus}
Probab=97.92 E-value=2.6e-05 Score=59.55 Aligned_cols=64 Identities=6% Similarity=0.070 Sum_probs=55.6
Q ss_pred CCCChHHHHHHHHHHhhCCCcccHHHHHHHhhcCCChHHHHHHHHHHHhCCCceeeecccCCCeeeEE
Q 026766 14 DSLTDHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVVNIHSKGKKHLM 81 (233)
Q Consensus 14 ~~L~~~e~lVy~~I~~aG~~GIw~~dik~~t~~~l~~~~v~k~LK~Le~k~lIK~vksV~~~~rK~Ym 81 (233)
-+|+..|..|+.+|...| ++..++|.+.+ ++++.+++++|+.||++|+|...++-.+++.+.|-
T Consensus 29 ~~l~~~~~~iL~~l~~~~--~~~~~ela~~l--~~~~~tvs~~l~~L~~~gli~r~~~~~d~r~~~~~ 92 (139)
T 3bja_A 29 YDISYVQFGVIQVLAKSG--KVSMSKLIENM--GCVPSNMTTMIQRMKRDGYVMTEKNPNDQRETLVY 92 (139)
T ss_dssp GTCCHHHHHHHHHHHHSC--SEEHHHHHHHC--SSCCTTHHHHHHHHHHTTSEEEEECSSCTTCEEEE
T ss_pred cCCCHHHHHHHHHHHHcC--CcCHHHHHHHH--CCChhHHHHHHHHHHHCCCeeeccCCCCCceeEEE
Confidence 369999999999998755 69999999999 99999999999999999999998887765555443
No 30
>2eth_A Transcriptional regulator, putative, MAR family; MARR family, structural genomics, joint center for structura genomics, JCSG; 2.30A {Thermotoga maritima} SCOP: a.4.5.28
Probab=97.91 E-value=2.9e-05 Score=61.04 Aligned_cols=63 Identities=11% Similarity=0.143 Sum_probs=55.6
Q ss_pred CCChHHHHHHHHHHhhCCCcccHHHHHHHhhcCCChHHHHHHHHHHHhCCCceeeecccCCCeeeEE
Q 026766 15 SLTDHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVVNIHSKGKKHLM 81 (233)
Q Consensus 15 ~L~~~e~lVy~~I~~aG~~GIw~~dik~~t~~~l~~~~v~k~LK~Le~k~lIK~vksV~~~~rK~Ym 81 (233)
+|+..|..|+.+|...| ++..++|.+.+ ++++.+++++|+.||++|||...++-.+++.+.|-
T Consensus 41 ~lt~~~~~iL~~l~~~~--~~t~~ela~~l--~is~~tvs~~l~~Le~~Gli~r~~~~~d~R~~~~~ 103 (154)
T 2eth_A 41 DMKTTELYAFLYVALFG--PKKMKEIAEFL--STTKSNVTNVVDSLEKRGLVVREMDPVDRRTYRVV 103 (154)
T ss_dssp HSBHHHHHHHHHHHHHC--CBCHHHHHHHT--TSCHHHHHHHHHHHHHTTSEEEEECTTTSSCEEEE
T ss_pred CCCHHHHHHHHHHHHcC--CCCHHHHHHHH--CCCHHHHHHHHHHHHHCCCEEeeCCCCCcceeEEE
Confidence 68899999999998877 69999999999 99999999999999999999998887765554443
No 31
>3nqo_A MARR-family transcriptional regulator; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE PG4; 2.20A {Clostridium difficile}
Probab=97.91 E-value=3.1e-05 Score=63.68 Aligned_cols=65 Identities=11% Similarity=0.173 Sum_probs=58.1
Q ss_pred CCCChHHHHHHHHHHhhCCCcccHHHHHHHhhcCCChHHHHHHHHHHHhCCCceeeecccCCCeeeE
Q 026766 14 DSLTDHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVVNIHSKGKKHL 80 (233)
Q Consensus 14 ~~L~~~e~lVy~~I~~aG~~GIw~~dik~~t~~~l~~~~v~k~LK~Le~k~lIK~vksV~~~~rK~Y 80 (233)
.+||..|..|+.+|....+.|+..++|...+ +++..+++++|+.||++|||...++-.+++.+.+
T Consensus 37 ~~lt~~q~~vL~~L~~~~~~~~t~~eLa~~l--~is~~tvs~~l~~Le~~GlV~r~~~~~DrR~~~l 101 (189)
T 3nqo_A 37 GILTSRQYMTILSILHLPEEETTLNNIARKM--GTSKQNINRLVANLEKNGYVDVIPSPHDKRAINV 101 (189)
T ss_dssp CSSCHHHHHHHHHHHHSCGGGCCHHHHHHHH--TSCHHHHHHHHHHHHHTTSEEEEECSSCSSCEEE
T ss_pred ccCCHHHHHHHHHHHhccCCCcCHHHHHHHH--CCCHHHHHHHHHHHHHCCCEEeccCCCCCCeeEE
Confidence 3699999999999998777889999999999 9999999999999999999999988886554444
No 32
>4b8x_A SCO5413, possible MARR-transcriptional regulator; winged helix motif; HET: CME; 1.25A {Streptomyces coelicolor}
Probab=97.91 E-value=3e-05 Score=61.39 Aligned_cols=66 Identities=12% Similarity=0.031 Sum_probs=55.8
Q ss_pred CCCChHHHHHHHHHHhhCCCcccHHHHHHHhhcCCChHHHHHHHHHHHhCCCceeeecccCCCeeeEE
Q 026766 14 DSLTDHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVVNIHSKGKKHLM 81 (233)
Q Consensus 14 ~~L~~~e~lVy~~I~~aG~~GIw~~dik~~t~~~l~~~~v~k~LK~Le~k~lIK~vksV~~~~rK~Ym 81 (233)
-+||..|..|+.+|..+.+.++.+++|...+ +++..+++++|+.||++|||.+.++-.+++.+...
T Consensus 31 ~gLt~~q~~vL~~L~~~~~~~~t~~eLa~~l--~~~~~tvs~~v~~Le~~Glv~r~~~~~DrR~~~l~ 96 (147)
T 4b8x_A 31 YGLTFARYEALVLLTFSKSGELPMSKIGERL--MVHPTSVTNTVDRLVRSGLVAKRPNPNDGRGTLAT 96 (147)
T ss_dssp GTCCHHHHHHHHHHHTSGGGEEEHHHHHHHH--TCCHHHHHHHHHHHHHTTSEEEEECC----CEEEE
T ss_pred cCCCHHHHHHHHHHHHCCCCCcCHHHHHHHH--CCCHHHHHHHHHHHHhCCCEEEeecCCcCceeEEE
Confidence 3799999999999988877789999999999 99999999999999999999999998875554443
No 33
>4hbl_A Transcriptional regulator, MARR family; HTH, transcription factor, DNA binding; 2.50A {Staphylococcus epidermidis}
Probab=97.90 E-value=2.7e-05 Score=61.02 Aligned_cols=64 Identities=17% Similarity=0.171 Sum_probs=49.6
Q ss_pred CCCChHHHHHHHHHHhhCCCcccHHHHHHHhhcCCChHHHHHHHHHHHhCCCceeeecccCCCeeeEE
Q 026766 14 DSLTDHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVVNIHSKGKKHLM 81 (233)
Q Consensus 14 ~~L~~~e~lVy~~I~~aG~~GIw~~dik~~t~~~l~~~~v~k~LK~Le~k~lIK~vksV~~~~rK~Ym 81 (233)
.+|+..|..|+.+|... .|+.+++|...+ +++..+|+++|+.||++|||...++-.+++.+.+.
T Consensus 37 ~~lt~~q~~iL~~l~~~--~~~~~~eLa~~l--~~~~~~vs~~l~~L~~~Glv~r~~~~~D~R~~~~~ 100 (149)
T 4hbl_A 37 FGITYSQYLVMLTLWEE--NPQTLNSIGRHL--DLSSNTLTPMLKRLEQSGWVKRERQQSDKRQLIIT 100 (149)
T ss_dssp TTCCHHHHHHHHHHHHS--SSEEHHHHHHHH--TCCHHHHHHHHHHHHHHTSEEC---------CEEE
T ss_pred cCCCHHHHHHHHHHHHC--CCCCHHHHHHHH--CCCHHHHHHHHHHHHHCCCEeeCCCCCCcceeeee
Confidence 46899999999999876 469999999999 99999999999999999999999888765555443
No 34
>2fbi_A Probable transcriptional regulator; MARR, APC5816, structural genomic protein structure initiative; 2.10A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=97.89 E-value=3.2e-05 Score=59.22 Aligned_cols=62 Identities=8% Similarity=0.185 Sum_probs=54.0
Q ss_pred CCChHHHHHHHHHHhhCCCcccHHHHHHHhhcCCChHHHHHHHHHHHhCCCceeeecccCCCeeeE
Q 026766 15 SLTDHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVVNIHSKGKKHL 80 (233)
Q Consensus 15 ~L~~~e~lVy~~I~~aG~~GIw~~dik~~t~~~l~~~~v~k~LK~Le~k~lIK~vksV~~~~rK~Y 80 (233)
+|+..|..|+..|...| |+..++|...+ +++..+|+++|+.||++|+|....+-.+++.+.|
T Consensus 33 ~lt~~~~~iL~~l~~~~--~~t~~ela~~l--~~s~~~vs~~l~~Le~~glv~r~~~~~d~R~~~~ 94 (142)
T 2fbi_A 33 GLTEQQWRVIRILRQQG--EMESYQLANQA--CILRPSMTGVLARLERDGIVRRWKAPKDQRRVYV 94 (142)
T ss_dssp TCCHHHHHHHHHHHHHC--SEEHHHHHHHT--TCCHHHHHHHHHHHHHTTSEEEEEETTEEEEEEE
T ss_pred CCCHHHHHHHHHHHHcC--CCCHHHHHHHH--CCCHhHHHHHHHHHHHCCCEEeecCCCCCCeeEE
Confidence 68999999999998876 59999999999 9999999999999999999999887665433333
No 35
>2gxg_A 146AA long hypothetical transcriptional regulator; winged helix; 1.45A {Sulfolobus tokodaii} PDB: 2eb7_A 2yr2_A 3gez_A 3gf2_A* 3gfi_A 3gfm_A 3gfj_A 3gfl_A
Probab=97.88 E-value=5e-05 Score=58.55 Aligned_cols=62 Identities=15% Similarity=0.134 Sum_probs=54.3
Q ss_pred CCCChHHHHHHHHHHhhCCCcccHHHHHHHhhcCCChHHHHHHHHHHHhCCCceeeecccCCCeeeE
Q 026766 14 DSLTDHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVVNIHSKGKKHL 80 (233)
Q Consensus 14 ~~L~~~e~lVy~~I~~aG~~GIw~~dik~~t~~~l~~~~v~k~LK~Le~k~lIK~vksV~~~~rK~Y 80 (233)
.+|+..|..|+.+|. +.|+..++|...+ +++..+|+++|+.||++|||...++-.+++.+.|
T Consensus 33 ~~l~~~~~~iL~~l~---~~~~~~~ela~~l--~~s~~tvs~~l~~Le~~glv~r~~~~~d~r~~~~ 94 (146)
T 2gxg_A 33 LNLSYLDFLVLRATS---DGPKTMAYLANRY--FVTQSAITASVDKLEEMGLVVRVRDREDRRKILI 94 (146)
T ss_dssp TTCCHHHHHHHHHHT---TSCBCHHHHHHHT--TCCHHHHHHHHHHHHHTTSEEEEECSSCTTCEEE
T ss_pred cCCCHHHHHHHHHHh---cCCcCHHHHHHHh--CCCchhHHHHHHHHHHCCCEEeecCCCCCceEEE
Confidence 368999999999997 5679999999999 9999999999999999999999888776555444
No 36
>2bv6_A MGRA, HTH-type transcriptional regulator MGRA; multidrug resistance regulator, virulence determinant, transcriptional factors; 2.8A {Staphylococcus aureus} SCOP: a.4.5.28
Probab=97.88 E-value=3.6e-05 Score=59.37 Aligned_cols=63 Identities=17% Similarity=0.236 Sum_probs=54.8
Q ss_pred CCChHHHHHHHHHHhhCCCcccHHHHHHHhhcCCChHHHHHHHHHHHhCCCceeeecccCCCeeeEE
Q 026766 15 SLTDHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVVNIHSKGKKHLM 81 (233)
Q Consensus 15 ~L~~~e~lVy~~I~~aG~~GIw~~dik~~t~~~l~~~~v~k~LK~Le~k~lIK~vksV~~~~rK~Ym 81 (233)
+|+..|..|+.+|...| ++..++|...+ +++..+|+++|+.||++|||...++-..++.+.|-
T Consensus 34 ~l~~~~~~iL~~l~~~~--~~~~~ela~~l--~~~~~tvs~~l~~L~~~gli~r~~~~~d~R~~~~~ 96 (142)
T 2bv6_A 34 NLTYPQFLVLTILWDES--PVNVKKVVTEL--ALDTGTVSPLLKRMEQVDLIKRERSEVDQREVFIH 96 (142)
T ss_dssp TCCHHHHHHHHHHHHSS--EEEHHHHHHHT--TCCTTTHHHHHHHHHHTTSEEEEECSSSTTCEEEE
T ss_pred CCCHHHHHHHHHHHHcC--CcCHHHHHHHH--CCChhhHHHHHHHHHHCCCEEeecCCCCcceEEEE
Confidence 68999999999998866 59999999999 99999999999999999999998876655444443
No 37
>1z91_A Organic hydroperoxide resistance transcriptional; OHRR, MARR family, bacterial transcription factor, DNA bindi protein; 2.50A {Bacillus subtilis} SCOP: a.4.5.28 PDB: 1z9c_A*
Probab=97.88 E-value=2.8e-05 Score=60.14 Aligned_cols=64 Identities=14% Similarity=0.174 Sum_probs=56.1
Q ss_pred CCCChHHHHHHHHHHhhCCCcccHHHHHHHhhcCCChHHHHHHHHHHHhCCCceeeecccCCCeeeEE
Q 026766 14 DSLTDHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVVNIHSKGKKHLM 81 (233)
Q Consensus 14 ~~L~~~e~lVy~~I~~aG~~GIw~~dik~~t~~~l~~~~v~k~LK~Le~k~lIK~vksV~~~~rK~Ym 81 (233)
.+|+..|..|+..|...| ++..++|...+ ++++.+|+++|+.||++|||...++-.+++.+.+.
T Consensus 36 ~~l~~~~~~iL~~l~~~~--~~~~~~la~~l--~~~~~tvs~~l~~L~~~glv~r~~~~~d~R~~~~~ 99 (147)
T 1z91_A 36 LNITYPQYLALLLLWEHE--TLTVKKMGEQL--YLDSGTLTPMLKRMEQQGLITRKRSEEDERSVLIS 99 (147)
T ss_dssp TCCCHHHHHHHHHHHHHS--EEEHHHHHHTT--TCCHHHHHHHHHHHHHHTSEECCBCSSCTTSBEEE
T ss_pred cCCCHHHHHHHHHHHHCC--CCCHHHHHHHH--CCCcCcHHHHHHHHHHCCCEEeccCCCCCCeeEEE
Confidence 479999999999999877 79999999999 99999999999999999999998877665555444
No 38
>3s2w_A Transcriptional regulator, MARR family; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 2.45A {Methanosarcina mazei}
Probab=97.88 E-value=3.9e-05 Score=60.66 Aligned_cols=64 Identities=8% Similarity=0.116 Sum_probs=53.9
Q ss_pred CCCChHHHHHHHHHHhhCCCcccHHHHHHHhhcCCChHHHHHHHHHHHhCCCceeeecccCCCeeeEE
Q 026766 14 DSLTDHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVVNIHSKGKKHLM 81 (233)
Q Consensus 14 ~~L~~~e~lVy~~I~~aG~~GIw~~dik~~t~~~l~~~~v~k~LK~Le~k~lIK~vksV~~~~rK~Ym 81 (233)
-+|+..|..|+.+|... .|+..++|...+ +++..+++++|+.||++|||...++-.+++.+.+-
T Consensus 46 ~~lt~~q~~vL~~l~~~--~~~t~~eLa~~l--~~~~~tvs~~l~~Le~~Glv~r~~~~~DrR~~~l~ 109 (159)
T 3s2w_A 46 YGIGSGQFPFLMRLYRE--DGINQESLSDYL--KIDKGTTARAIQKLVDEGYVFRQRDEKDRRSYRVF 109 (159)
T ss_dssp GTCCTTTHHHHHHHHHS--CSEEHHHHHHHH--TCCHHHHHHHHHHHHHTTSEEEEECC---CCEEEE
T ss_pred cCCCHHHHHHHHHHHHC--CCCCHHHHHHHH--CCCHHHHHHHHHHHHHCCCEEEecCCCCCCeeEEE
Confidence 37899999999999876 569999999999 99999999999999999999999888875555443
No 39
>2nyx_A Probable transcriptional regulatory protein, RV14; alpha/beta, structural genomics, PSI-2; 2.30A {Mycobacterium tuberculosis}
Probab=97.87 E-value=5.4e-05 Score=60.70 Aligned_cols=62 Identities=11% Similarity=0.085 Sum_probs=55.0
Q ss_pred CCChHHHHHHHHHHhhCCCcccHHHHHHHhhcCCChHHHHHHHHHHHhCCCceeeecccCCCeeeE
Q 026766 15 SLTDHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVVNIHSKGKKHL 80 (233)
Q Consensus 15 ~L~~~e~lVy~~I~~aG~~GIw~~dik~~t~~~l~~~~v~k~LK~Le~k~lIK~vksV~~~~rK~Y 80 (233)
+|+..|..|+.+|...| |+..++|...+ +++..+++++|+.||++|||...++-.+++.+.+
T Consensus 42 ~lt~~~~~iL~~L~~~~--~~t~~eLa~~l--~is~~tvs~~l~~Le~~GlV~r~~~~~DrR~~~~ 103 (168)
T 2nyx_A 42 NITIPQFRTLVILSNHG--PINLATLATLL--GVQPSATGRMVDRLVGAELIDRLPHPTSRRELLA 103 (168)
T ss_dssp SCCHHHHHHHHHHHHHC--SEEHHHHHHHH--TSCHHHHHHHHHHHHHTTSEEEEECSSCSSCEEE
T ss_pred CCCHHHHHHHHHHHHcC--CCCHHHHHHHh--CCCHHHHHHHHHHHHHCCCEEeccCCCCCCeeEE
Confidence 79999999999998876 69999999999 9999999999999999999999888776444443
No 40
>2a61_A Transcriptional regulator TM0710; APC4350, MCSG, midwest center for structural genomics, PSI, protein structure initiative, MARR; 1.80A {Thermotoga maritima} SCOP: a.4.5.28
Probab=97.87 E-value=4.3e-05 Score=58.84 Aligned_cols=62 Identities=15% Similarity=0.123 Sum_probs=53.9
Q ss_pred CCChHHHHHHHHHHhhCCCcccHHHHHHHhhcCCChHHHHHHHHHHHhCCCceeeecccCCCeeeE
Q 026766 15 SLTDHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVVNIHSKGKKHL 80 (233)
Q Consensus 15 ~L~~~e~lVy~~I~~aG~~GIw~~dik~~t~~~l~~~~v~k~LK~Le~k~lIK~vksV~~~~rK~Y 80 (233)
+|+..|..|+.+|...| |+..++|.+.+ +++..+++++|+.||++|+|...++-.+++.+.|
T Consensus 30 ~l~~~~~~iL~~l~~~~--~~~~~~la~~l--~~s~~tvs~~l~~L~~~glv~r~~~~~d~r~~~~ 91 (145)
T 2a61_A 30 GITPAQFDILQKIYFEG--PKRPGELSVLL--GVAKSTVTGLVKRLEADGYLTRTPDPADRRAYFL 91 (145)
T ss_dssp TCCHHHHHHHHHHHHHC--CBCHHHHHHHH--TCCHHHHHHHHHHHHHTTSEEEEEETTEEEEEEE
T ss_pred CCCHHHHHHHHHHHHcC--CCCHHHHHHHH--CCCchhHHHHHHHHHHCCCeeecCCCCCCceEEE
Confidence 68999999999998865 69999999999 9999999999999999999999887665433333
No 41
>4aik_A Transcriptional regulator SLYA; transcription, transcription factor; 1.85A {Yersinia pseudotuberculosis} PDB: 4aih_A 4aij_A 3qpt_A* 3q5f_A*
Probab=97.87 E-value=7.1e-05 Score=59.69 Aligned_cols=64 Identities=13% Similarity=0.193 Sum_probs=55.9
Q ss_pred CCCChHHHHHHHHHHhhCCCcccHHHHHHHhhcCCChHHHHHHHHHHHhCCCceeeecccCCCeeeE
Q 026766 14 DSLTDHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVVNIHSKGKKHL 80 (233)
Q Consensus 14 ~~L~~~e~lVy~~I~~aG~~GIw~~dik~~t~~~l~~~~v~k~LK~Le~k~lIK~vksV~~~~rK~Y 80 (233)
-+||..|..|+..|...|. |+.+++|...+ +++..+++++|+.||++|||.+.++-.+++.+..
T Consensus 27 ~gLt~~q~~vL~~L~~~~~-~~~~~eLa~~l--~~~~~tvs~~v~~Le~~GlV~R~~~~~DrR~~~l 90 (151)
T 4aik_A 27 LELTQTHWVTLYNINRLPP-EQSQIQLAKAI--GIEQPSLVRTLDQLEEKGLITRHTSANDRRAKRI 90 (151)
T ss_dssp GCCCHHHHHHHHHHHHSCT-TSCHHHHHHHH--TSCHHHHHHHHHHHHHTTSEEEEECSSCTTCEEE
T ss_pred cCCCHHHHHHHHHHHHcCC-CCcHHHHHHHH--CcCHHHHHHHHHHHHhCCCeEeecCCCCCcchhh
Confidence 3799999999999987654 78899999999 9999999999999999999999999887555444
No 42
>1s3j_A YUSO protein; structural genomics, MARR transcriptional regulator family, PSI, protein structure initiative; HET: MSE; 2.25A {Bacillus subtilis} SCOP: a.4.5.28
Probab=97.86 E-value=5.7e-05 Score=58.92 Aligned_cols=63 Identities=14% Similarity=0.250 Sum_probs=55.2
Q ss_pred CCCChHHHHHHHHHHhhCCCcccHHHHHHHhhcCCChHHHHHHHHHHHhCCCceeeecccCCCeeeE
Q 026766 14 DSLTDHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVVNIHSKGKKHL 80 (233)
Q Consensus 14 ~~L~~~e~lVy~~I~~aG~~GIw~~dik~~t~~~l~~~~v~k~LK~Le~k~lIK~vksV~~~~rK~Y 80 (233)
.+|+..|..|+.+|...| |+..++|.+.+ +++..+|+++|+.||++|||....+-.+++.+.|
T Consensus 33 ~~l~~~~~~iL~~l~~~~--~~t~~ela~~l--~~s~~tvs~~l~~Le~~glv~r~~~~~d~R~~~~ 95 (155)
T 1s3j_A 33 QGVTPAQLFVLASLKKHG--SLKVSEIAERM--EVKPSAVTLMADRLEQKNLIARTHNTKDRRVIDL 95 (155)
T ss_dssp TTCCHHHHHHHHHHHHHS--EEEHHHHHHHH--TSCHHHHHHHHHHHHHTTSEEEEECSSCTTSEEE
T ss_pred cCCCHHHHHHHHHHHHcC--CCCHHHHHHHH--CCCHHHHHHHHHHHHHCCCEeecCCCCCCceEEE
Confidence 478999999999998865 69999999999 9999999999999999999999887766554444
No 43
>3bpv_A Transcriptional regulator; MARR, DNA binding, transcription factor, winged helix motif, DNA-binding; 1.40A {Methanobacterium thermoautotrophicum} PDB: 3bpx_A*
Probab=97.86 E-value=4.5e-05 Score=58.23 Aligned_cols=58 Identities=14% Similarity=0.245 Sum_probs=52.2
Q ss_pred CCCChHHHHHHHHHHhhCCCcccHHHHHHHhhcCCChHHHHHHHHHHHhCCCceeeecccCC
Q 026766 14 DSLTDHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVVNIHSK 75 (233)
Q Consensus 14 ~~L~~~e~lVy~~I~~aG~~GIw~~dik~~t~~~l~~~~v~k~LK~Le~k~lIK~vksV~~~ 75 (233)
.+|++.|..|+.+|... .|+..++|.+.+ +++..+++++|+.||++|+|...++-.++
T Consensus 25 ~~l~~~~~~iL~~l~~~--~~~~~~ela~~l--~~s~~tvs~~l~~L~~~glv~~~~~~~d~ 82 (138)
T 3bpv_A 25 LNLTDAQVACLLRIHRE--PGIKQDELATFF--HVDKGTIARTLRRLEESGFIEREQDPENR 82 (138)
T ss_dssp GTCCHHHHHHHHHHHHS--TTCBHHHHHHHH--TCCHHHHHHHHHHHHHTTSEEEEEETTEE
T ss_pred cCCCHHHHHHHHHHHHc--CCCCHHHHHHHH--CCCHHHHHHHHHHHHHCCCEEeecCCCCc
Confidence 37899999999999885 469999999999 99999999999999999999998876653
No 44
>2qww_A Transcriptional regulator, MARR family; YP_013417.1, multiple antibiotic-resistance repressor (MARR) structural genomics; HET: MSE; 2.07A {Listeria monocytogenes str}
Probab=97.86 E-value=4.9e-05 Score=59.36 Aligned_cols=63 Identities=19% Similarity=0.213 Sum_probs=53.5
Q ss_pred CCChHHHHHHHHHHhhCCCcccHHHHHHHhhcCCChHHHHHHHHHHHhCCCcee--eecccCCCeeeEE
Q 026766 15 SLTDHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKE--VVNIHSKGKKHLM 81 (233)
Q Consensus 15 ~L~~~e~lVy~~I~~aG~~GIw~~dik~~t~~~l~~~~v~k~LK~Le~k~lIK~--vksV~~~~rK~Ym 81 (233)
+|+..|..|+.+|...| |+..++|.+.+ ++++.+++++|+.||++|||.. .++-..++.+.+-
T Consensus 38 ~lt~~~~~iL~~l~~~~--~~t~~eLa~~l--~~~~~tvs~~l~~Le~~Glv~r~~~~~~~d~R~~~~~ 102 (154)
T 2qww_A 38 GLTIQQLAMINVIYSTP--GISVADLTKRL--IITGSSAAANVDGLISLGLVVKLNKTIPNDSMDLTLK 102 (154)
T ss_dssp TCCHHHHHHHHHHHHST--TEEHHHHHHHH--TCCHHHHHHHHHHHHHTTSEEESCC--CTTCTTCEEE
T ss_pred CCCHHHHHHHHHHHHCC--CCCHHHHHHHH--CCCHHHHHHHHHHHHHCCCEEecCcCCCCCCceeEeE
Confidence 68999999999998865 59999999999 9999999999999999999999 8777765554443
No 45
>2fbh_A Transcriptional regulator PA3341; MARR, transcription regulator, APC5857, structural genomics, protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=97.85 E-value=5.4e-05 Score=58.23 Aligned_cols=64 Identities=11% Similarity=0.253 Sum_probs=53.6
Q ss_pred CCCChHHHHHHHHHHhhCCCcccHHHHHHHhhcCCChHHHHHHHHHHHhCCCceeeecccCCCeeeE
Q 026766 14 DSLTDHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVVNIHSKGKKHL 80 (233)
Q Consensus 14 ~~L~~~e~lVy~~I~~aG~~GIw~~dik~~t~~~l~~~~v~k~LK~Le~k~lIK~vksV~~~~rK~Y 80 (233)
.+|+..|..|+.+|.. .+.++..++|...+ ++++.+++++|+.||++|||...++-.+++.+.+
T Consensus 33 ~~l~~~~~~iL~~l~~-~~~~~t~~~la~~l--~~s~~~vs~~l~~L~~~glv~r~~~~~d~R~~~~ 96 (146)
T 2fbh_A 33 LGLSQARWLVLLHLAR-HRDSPTQRELAQSV--GVEGPTLARLLDGLESQGLVRRLAVAEDRRAKHI 96 (146)
T ss_dssp GCCTTTHHHHHHHHHH-CSSCCBHHHHHHHH--TCCHHHHHHHHHHHHHTTSEEEECCBTTBCSCEE
T ss_pred CCCCHHHHHHHHHHHH-cCCCCCHHHHHHHh--CCChhhHHHHHHHHHHCCCeeecCCCcccCeeee
Confidence 3689999999999932 34479999999999 9999999999999999999999887765444444
No 46
>3tgn_A ADC operon repressor ADCR; helix-turn-helix, transcriptional regulator, transcription; 2.00A {Streptococcus pneumoniae}
Probab=97.84 E-value=5.3e-05 Score=58.50 Aligned_cols=65 Identities=20% Similarity=0.289 Sum_probs=49.2
Q ss_pred CCCCChHHHHHHHHHHhhCCCcccHHHHHHHhhcCCChHHHHHHHHHHHhCCCceeeecccCCCeeeEEe
Q 026766 13 SDSLTDHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVVNIHSKGKKHLMA 82 (233)
Q Consensus 13 ~~~L~~~e~lVy~~I~~aG~~GIw~~dik~~t~~~l~~~~v~k~LK~Le~k~lIK~vksV~~~~rK~Yml 82 (233)
--+|++.|..|+.+|...| +..++|...+ +++..+|+++|+.||++|||...++-.+++.+.|-|
T Consensus 33 ~~~lt~~~~~iL~~l~~~~---~t~~eLa~~l--~~s~~tvs~~l~~L~~~Glv~r~~~~~d~R~~~~~l 97 (146)
T 3tgn_A 33 EVALTNTQEHILMLLSEES---LTNSELARRL--NVSQAAVTKAIKSLVKEGMLETSKDSKDARVIFYQL 97 (146)
T ss_dssp SSCCCHHHHHHHHHHTTCC---CCHHHHHHHH--TCCHHHHHHHHHHHHHTTSEEC----------CCEE
T ss_pred ccCCCHHHHHHHHHHHhCC---CCHHHHHHHH--CCCHHHHHHHHHHHHHCCCeEeccCCCCCceeEEEE
Confidence 3478999999999997765 9999999999 999999999999999999999988877655554433
No 47
>3f3x_A Transcriptional regulator, MARR family, putative; DNA binding protein, DNA-binding, transcription regulation; 1.90A {Sulfolobus solfataricus}
Probab=97.83 E-value=4.3e-05 Score=59.18 Aligned_cols=62 Identities=10% Similarity=0.138 Sum_probs=54.1
Q ss_pred CCChHHHHHHHHHHhhCCCcccHHHHHHHhhcCCChHHHHHHHHHHHhCCCceeeecccCCCeeeEE
Q 026766 15 SLTDHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVVNIHSKGKKHLM 81 (233)
Q Consensus 15 ~L~~~e~lVy~~I~~aG~~GIw~~dik~~t~~~l~~~~v~k~LK~Le~k~lIK~vksV~~~~rK~Ym 81 (233)
+|+..|..|+..|...+. ..++|...+ ++++.++++.|+.||++|||...++-.+++.+.+-
T Consensus 34 ~lt~~~~~iL~~l~~~~~---~~~~la~~l--~~~~~tvs~~l~~Le~~Glv~r~~~~~D~R~~~~~ 95 (144)
T 3f3x_A 34 NLSYLDFSILKATSEEPR---SMVYLANRY--FVTQSAITAAVDKLEAKGLVRRIRDSKDRRIVIVE 95 (144)
T ss_dssp SCCHHHHHHHHHHHHSCE---EHHHHHHHH--TCCHHHHHHHHHHHHHTTSEEEEEETTEEEEEEEE
T ss_pred CCCHHHHHHHHHHHHCCC---CHHHHHHHH--CCChhHHHHHHHHHHHCCCEEeccCCCCCceEEEE
Confidence 789999999999987664 999999999 99999999999999999999998887764444443
No 48
>3cdh_A Transcriptional regulator, MARR family; helix-turn-hleix, structura genomics, PSI-2, protein structure initiative; 2.69A {Silicibacter pomeroyi dss-3}
Probab=97.82 E-value=3.4e-05 Score=60.45 Aligned_cols=64 Identities=9% Similarity=0.207 Sum_probs=51.1
Q ss_pred CCCChHHHHHHHHHHhhCCCcccHHHHHHHhhcCCChHHHHHHHHHHHhCCCceeeecccCCCeeeEE
Q 026766 14 DSLTDHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVVNIHSKGKKHLM 81 (233)
Q Consensus 14 ~~L~~~e~lVy~~I~~aG~~GIw~~dik~~t~~~l~~~~v~k~LK~Le~k~lIK~vksV~~~~rK~Ym 81 (233)
.+|+..|..|+.+|...| |+..++|...+ +++..+++++|+.||++|||....+-.+++.+.|-
T Consensus 39 ~~lt~~~~~iL~~l~~~~--~~t~~ela~~l--~i~~~tvs~~l~~Le~~Glv~r~~~~~d~R~~~~~ 102 (155)
T 3cdh_A 39 QGLRVPEWRVLACLVDND--AMMITRLAKLS--LMEQSRMTRIVDQMDARGLVTRVADAKDKRRVRVR 102 (155)
T ss_dssp TTCCHHHHHHHHHHSSCS--CBCHHHHHHHT--TCCHHHHHHHHHHHHHTTSEEECC------CCCEE
T ss_pred cCCCHHHHHHHHHHHHCC--CcCHHHHHHHH--CCCHHHHHHHHHHHHHCCCEEeccCCCcCCeeEeE
Confidence 368999999999997654 69999999999 99999999999999999999998777665444443
No 49
>2fa5_A Transcriptional regulator MARR/EMRR family; multiple antibiotics resistance repressor, XCC structural genomics, X-RAY diffraction; 1.80A {Xanthomonas campestris}
Probab=97.82 E-value=4.3e-05 Score=60.19 Aligned_cols=62 Identities=10% Similarity=0.195 Sum_probs=48.4
Q ss_pred CCChHHHHHHHHHHhhCCCcccHHHHHHHhhcCCChHHHHHHHHHHHhCCCceeeecccCCCeeeE
Q 026766 15 SLTDHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVVNIHSKGKKHL 80 (233)
Q Consensus 15 ~L~~~e~lVy~~I~~aG~~GIw~~dik~~t~~~l~~~~v~k~LK~Le~k~lIK~vksV~~~~rK~Y 80 (233)
+|+..|..|+.+|...| |+..++|...+ +++..+|+++|+.||++|||...++-..++.+.|
T Consensus 46 ~lt~~~~~iL~~l~~~~--~~t~~ela~~l--~is~~tvs~~l~~Le~~glv~r~~~~~d~R~~~~ 107 (162)
T 2fa5_A 46 GMAIPEWRVITILALYP--GSSASEVSDRT--AMDKVAVSRAVARLLERGFIRRETHGDDRRRSML 107 (162)
T ss_dssp CCCHHHHHHHHHHHHST--TCCHHHHHHHH--TCCHHHHHHHHHHHHHTTSEEC---------CCC
T ss_pred CCCHHHHHHHHHHHhCC--CCCHHHHHHHH--CCCHHHHHHHHHHHHHCCCEeeecCCCCCCeeEE
Confidence 68999999999998854 79999999999 9999999999999999999998887766544444
No 50
>1p4x_A Staphylococcal accessory regulator A homologue; winged-helix protein, transcription; 2.20A {Staphylococcus aureus} SCOP: a.4.5.28 a.4.5.28
Probab=97.80 E-value=3.3e-05 Score=67.48 Aligned_cols=149 Identities=13% Similarity=0.069 Sum_probs=99.3
Q ss_pred CCCChHHHHHHHHHHhhCCCcccHHHHHHHhhcCCChHHHHHHHHHHHhCCCceeeecccCCCeeeEE-eec--------
Q 026766 14 DSLTDHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVVNIHSKGKKHLM-AVE-------- 84 (233)
Q Consensus 14 ~~L~~~e~lVy~~I~~aG~~GIw~~dik~~t~~~l~~~~v~k~LK~Le~k~lIK~vksV~~~~rK~Ym-l~~-------- 84 (233)
-+||..|..|+..|.+.++.|+.+++|..++ ++.+.+++++|+.||++|||.+..+-++. |.+++ |.+
T Consensus 30 ~~lt~~q~~vL~~L~~~~~~~~~~~el~~~l--~~~~~t~t~~l~rLe~~G~i~R~~~~~Dr-R~~~i~LT~~G~~~~~~ 106 (250)
T 1p4x_A 30 VDMTIKEFILLTYLFHQQENTLPFKKIVSDL--CYKQSDLVQHIKVLVKHSYISKVRSKIDE-RNTYISISEEQREKIAE 106 (250)
T ss_dssp CSSCHHHHHHHHHHHSCSCSEEEHHHHHHHS--SSCGGGTHHHHHHHHHTTSCEEEECSSST-TSEEEECCHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHhcCCCCcCHHHHHHHH--CCCHhhHHHHHHHHHHCCCEEecCCCCCC-CeEEEEECHHHHHHHHH
Confidence 3799999999999999888899999999999 99999999999999999999999999864 33432 221
Q ss_pred cccCCCcccCCcccCCCCC---------HHHH---HHHHHHHHHHhhhCCCCCHHH--HHHHHHHhC---Ccc------c
Q 026766 85 FEPSKEISGGAWYSEGSLD---------TEFI---KVVKSQCLKQIIKLKVATLEG--ISDSIKRSG---AFK------V 141 (233)
Q Consensus 85 lePs~eiTGG~wy~d~e~D---------~efI---~~l~~~~~~~i~~~~~~T~~~--I~~~I~~~~---i~~------~ 141 (233)
+.|..+-.=..|+.+ +|| ..|. ..+.+..-.++... ..|..+ |+.+|...+ ++. .
T Consensus 107 ~~~~~~~~~eq~s~E-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-gLt~~q~~vL~~L~~~~~~~~t~~eLa~~l 184 (250)
T 1p4x_A 107 RVTLFDQIIKQFNLA-DQSESQMIPKDSKEFLNLMMYTMYFKNIIKKHL-TLSFVEFTILAIITSQNKNIVLLKDLIETI 184 (250)
T ss_dssp HHHHHHHHHHHHHHH-TTCCSSCSCCSHHHHHHHHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHTTTTCCEEHHHHHHHS
T ss_pred HHHHHHHHHHHHhcc-cccccccchHHHHHHHHHHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHhCCCCCcCHHHHHHHH
Confidence 111110000223333 333 1111 11122222222223 355554 566776553 222 3
Q ss_pred ccCHHHHHHHHHHHhcCCeEEEEeeC
Q 026766 142 DLTKQQIEEIVRALVLDNQIMEVKSN 167 (233)
Q Consensus 142 ~Ls~~di~~il~~Lv~Dg~ie~v~~~ 167 (233)
.++..-|-.+|+.|+=.|.|++.++.
T Consensus 185 ~i~~~tvt~~v~rLe~~GlV~R~~~~ 210 (250)
T 1p4x_A 185 HHKYPQTVRALNNLKKQGYLIKERST 210 (250)
T ss_dssp SSCHHHHHHHHHHHHHHTSSEEEECS
T ss_pred CCChhhHHHHHHHHHHCCCEEeeCCC
Confidence 57889999999999999999998743
No 51
>2pex_A Transcriptional regulator OHRR; transcription regulator; 1.90A {Xanthomonas campestris} PDB: 2pfb_A
Probab=97.79 E-value=7.1e-05 Score=58.50 Aligned_cols=64 Identities=17% Similarity=0.158 Sum_probs=50.9
Q ss_pred CCCChHHHHHHHHHHhhCCCcccHHHHHHHhhcCCChHHHHHHHHHHHhCCCceeeecccCCCeeeEE
Q 026766 14 DSLTDHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVVNIHSKGKKHLM 81 (233)
Q Consensus 14 ~~L~~~e~lVy~~I~~aG~~GIw~~dik~~t~~~l~~~~v~k~LK~Le~k~lIK~vksV~~~~rK~Ym 81 (233)
-+|+..|..|+.+|...| ++..++|.+.+ +++..+|+++|+.||++|||...++-.+++.+.+.
T Consensus 43 ~~l~~~~~~iL~~l~~~~--~~t~~ela~~l--~~s~~tvs~~l~~Le~~glv~r~~~~~d~R~~~~~ 106 (153)
T 2pex_A 43 LDLTYPQYLVMLVLWETD--ERSVSEIGERL--YLDSATLTPLLKRLQAAGLVTRTRAASDERQVIIA 106 (153)
T ss_dssp TTCCHHHHHHHHHHHHSC--SEEHHHHHHHH--TCCHHHHHHHHHHHHHTTSEEEEC-------CEEE
T ss_pred CCCCHHHHHHHHHHHhCC--CcCHHHHHHHh--CCCcccHHHHHHHHHHCCCEeecCCcccCCeeEee
Confidence 478999999999998754 69999999999 99999999999999999999998876654444443
No 52
>3fm5_A Transcriptional regulator; MCSG, PF04017, PSI, MARR, structu genomics, protein structure initiative, midwest center for structural genomics; HET: GOL; 2.00A {Rhodococcus jostii}
Probab=97.79 E-value=4.3e-05 Score=59.66 Aligned_cols=64 Identities=11% Similarity=0.212 Sum_probs=47.8
Q ss_pred CCCChHHHHHHHHHHhhCCCcccHHHHHHHhhcCCChHHHHHHHHHHHhCCCceeeecccCCCeeeE
Q 026766 14 DSLTDHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVVNIHSKGKKHL 80 (233)
Q Consensus 14 ~~L~~~e~lVy~~I~~aG~~GIw~~dik~~t~~~l~~~~v~k~LK~Le~k~lIK~vksV~~~~rK~Y 80 (233)
.+|+..|..|+.+|...+ .++.+++|...+ +++..++++.|+.||++|||.+.++-.+++.+.+
T Consensus 35 ~glt~~q~~vL~~l~~~~-~~~t~~eLa~~l--~i~~~tvs~~l~~Le~~Glv~r~~~~~D~R~~~~ 98 (150)
T 3fm5_A 35 TGLRVRSYSVLVLACEQA-EGVNQRGVAATM--GLDPSQIVGLVDELEERGLVVRTLDPSDRRNKLI 98 (150)
T ss_dssp GTCCHHHHHHHHHHHHST-TCCCSHHHHHHH--TCCHHHHHHHHHHHHTTTSEEC-----------C
T ss_pred cCCCHHHHHHHHHHHhCC-CCcCHHHHHHHH--CCCHhHHHHHHHHHHHCCCEEeeCCccccchhee
Confidence 368999999999997654 359999999999 9999999999999999999999888776554444
No 53
>3deu_A Transcriptional regulator SLYA; MARR, WING-helix, transcription regulator, activator, DNA-binding, repressor; HET: SAL; 2.30A {Salmonella typhimurium} SCOP: a.4.5.28
Probab=97.75 E-value=8.4e-05 Score=59.76 Aligned_cols=66 Identities=12% Similarity=0.178 Sum_probs=51.2
Q ss_pred CCCChHHHHHHHHHHhhCCCcccHHHHHHHhhcCCChHHHHHHHHHHHhCCCceeeecccCCCeeeEEe
Q 026766 14 DSLTDHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVVNIHSKGKKHLMA 82 (233)
Q Consensus 14 ~~L~~~e~lVy~~I~~aG~~GIw~~dik~~t~~~l~~~~v~k~LK~Le~k~lIK~vksV~~~~rK~Yml 82 (233)
.+|+..|..|+.+|...+ .|+..++|...+ +++..+|++.|+.||++|||.+.++-.+++.+.+.|
T Consensus 49 ~glt~~q~~vL~~L~~~~-~~~t~~eLa~~l--~i~~~tvs~~l~~Le~~GlV~r~~~~~DrR~~~l~L 114 (166)
T 3deu_A 49 LELTQTHWVTLHNIHQLP-PDQSQIQLAKAI--GIEQPSLVRTLDQLEDKGLISRQTCASDRRAKRIKL 114 (166)
T ss_dssp TTCCHHHHHHHHHHHHSC-SSEEHHHHHHHH--TSCHHHHHHHHHHHHHTTSEEEC--------CEEEE
T ss_pred cCCCHHHHHHHHHHHHcC-CCCCHHHHHHHH--CCCHhhHHHHHHHHHHCCCEEeeCCCCCCCeeEEEE
Confidence 479999999999998743 469999999999 999999999999999999999998887655555544
No 54
>1ub9_A Hypothetical protein PH1061; helix-turn-helix motif, winged helix motif, structural genom transcription; 2.05A {Pyrococcus horikoshii} SCOP: a.4.5.28
Probab=97.70 E-value=0.00015 Score=52.66 Aligned_cols=62 Identities=13% Similarity=0.136 Sum_probs=50.0
Q ss_pred ChHHHHHHHHHHhhCCCcccHHHHHHHhhcCCChHHHHHHHHHHHhCCCceeeecccCCCeeeEEe
Q 026766 17 TDHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVVNIHSKGKKHLMA 82 (233)
Q Consensus 17 ~~~e~lVy~~I~~aG~~GIw~~dik~~t~~~l~~~~v~k~LK~Le~k~lIK~vksV~~~~rK~Yml 82 (233)
++....|+.++...| ++..++|.+.+ ++++.+|++.|+.||++|+|...+....++++.|-|
T Consensus 15 ~~~~~~iL~~L~~~~--~~~~~ela~~l--~is~~tvs~~l~~L~~~gli~~~~~~~~~r~~~~~l 76 (100)
T 1ub9_A 15 NPVRLGIMIFLLPRR--KAPFSQIQKVL--DLTPGNLDSHIRVLERNGLVKTYKVIADRPRTVVEI 76 (100)
T ss_dssp SHHHHHHHHHHHHHS--EEEHHHHHHHT--TCCHHHHHHHHHHHHHTTSEEEEEECSSSCEEEEEE
T ss_pred ChHHHHHHHHHHhcC--CcCHHHHHHHH--CcCHHHHHHHHHHHHHCCCEEEEecCCCcceEEEEE
Confidence 345667888887655 59999999999 999999999999999999999877665545555543
No 55
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=97.70 E-value=6.8e-05 Score=54.45 Aligned_cols=50 Identities=16% Similarity=0.271 Sum_probs=46.3
Q ss_pred HHHHHHHHHHhhC-CCcccHHHHHHHhhcCCChHHHHHHHHHHHhCCCceeee
Q 026766 19 HERLIYDVIRSKQ-DMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVV 70 (233)
Q Consensus 19 ~e~lVy~~I~~aG-~~GIw~~dik~~t~~~l~~~~v~k~LK~Le~k~lIK~vk 70 (233)
.++.|+.++.+.| .+++..++|.+++ +++.++|++.|++||++|+|+.+-
T Consensus 15 ~~~~IL~~L~~~~~~~~~t~~eLA~~L--gvs~~tV~~~L~~L~~~G~I~~~g 65 (77)
T 1qgp_A 15 QEQRILKFLEELGEGKATTAHDLSGKL--GTPKKEINRVLYSLAKKGKLQKEA 65 (77)
T ss_dssp HHHHHHHHHHHHCSSSCEEHHHHHHHH--CCCHHHHHHHHHHHHHHTSEEEEC
T ss_pred HHHHHHHHHHHcCCCCCcCHHHHHHHH--CcCHHHHHHHHHHHHHCCCEEecC
Confidence 4688999999999 7789999999999 999999999999999999998864
No 56
>2hr3_A Probable transcriptional regulator; MCSG, structural genomics, PSI-2, protein structure initiati midwest center for structural genomics; 2.40A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=97.70 E-value=5.8e-05 Score=58.34 Aligned_cols=64 Identities=8% Similarity=0.143 Sum_probs=50.6
Q ss_pred CCCChHHHHHHHHHHhhCCCcccHHHHHHHhhcCCChHHHHHHHHHHHhCCCceeeecccCCCeeeE
Q 026766 14 DSLTDHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVVNIHSKGKKHL 80 (233)
Q Consensus 14 ~~L~~~e~lVy~~I~~aG~~GIw~~dik~~t~~~l~~~~v~k~LK~Le~k~lIK~vksV~~~~rK~Y 80 (233)
.+|+..+..|+..|..+ +.|+..++|...+ ++++.+|+++|+.||++|||....+-.+++.+.+
T Consensus 31 ~~l~~~~~~iL~~l~~~-~~~~~~~~la~~l--~i~~~~vs~~l~~Le~~glv~r~~~~~d~R~~~~ 94 (147)
T 2hr3_A 31 DPVQFSQLVVLGAIDRL-GGDVTPSELAAAE--RMRSSNLAALLRELERGGLIVRHADPQDGRRTRV 94 (147)
T ss_dssp CHHHHHHHHHHHHHHHT-TSCBCHHHHHHHT--TCCHHHHHHHHHHHHHTTSEEEEC------CCEE
T ss_pred cCCCHHHHHHHHHHHHc-CCCCCHHHHHHHh--CCChhhHHHHHHHHHHCCCEeeCCCCCCCCceee
Confidence 46788999999999873 3469999999999 9999999999999999999999887776544444
No 57
>1fx7_A Iron-dependent repressor IDER; DTXR, iron-dependent regulator, signaling protein; 2.00A {Mycobacterium tuberculosis} SCOP: a.4.5.24 a.76.1.1 b.34.1.2 PDB: 1u8r_A
Probab=97.69 E-value=0.00018 Score=61.28 Aligned_cols=118 Identities=11% Similarity=0.166 Sum_probs=83.0
Q ss_pred CCCCChHHHHHHHHHHhhCCCcccH--HHHHHHhhcCCChHHHHHHHHHHHhCCCceeeecccCCCeeeEEeeccccCCC
Q 026766 13 SDSLTDHERLIYDVIRSKQDMGIWT--RDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVVNIHSKGKKHLMAVEFEPSKE 90 (233)
Q Consensus 13 ~~~L~~~e~lVy~~I~~aG~~GIw~--~dik~~t~~~l~~~~v~k~LK~Le~k~lIK~vksV~~~~rK~Yml~~lePs~e 90 (233)
|++|++.+..++.+|...+..|+.+ ++|.+.+ +++..+++++|+.||++|||...++ +.++
T Consensus 1 m~~lt~~~e~~L~~L~~l~~~~~~~~~~~La~~l--~vs~~tvs~~l~~Le~~GlV~r~~~-----~~v~---------- 63 (230)
T 1fx7_A 1 MNELVDTTEMYLRTIYDLEEEGVTPLRARIAERL--DQSGPTVSQTVSRMERDGLLRVAGD-----RHLE---------- 63 (230)
T ss_dssp CCTTSSHHHHHHHHHHHHHHHTSCCCHHHHHHHH--TCCHHHHHHHHHHHHHTTSEEECTT-----SCEE----------
T ss_pred CCCCCHHHHHHHHHHHHHhhcCCCCcHHHHHHHH--CcCHHHHHHHHHHHHHCCCEEEeCC-----ccEE----------
Confidence 3578888888888887665568888 9999999 9999999999999999999988653 2122
Q ss_pred cccCCcccC-CCCCHHHHHHHHHHHHHHhhhCCCCCHHHHHHHHHHhCCcccccCHHHHHHHHHHHh
Q 026766 91 ISGGAWYSE-GSLDTEFIKVVKSQCLKQIIKLKVATLEGISDSIKRSGAFKVDLTKQQIEEIVRALV 156 (233)
Q Consensus 91 iTGG~wy~d-~e~D~efI~~l~~~~~~~i~~~~~~T~~~I~~~I~~~~i~~~~Ls~~di~~il~~Lv 156 (233)
.|+ |.=-.+-+....+....|+...-..+.+++++...... -.+|.+++++|.+.|-
T Consensus 64 ------LT~~G~~~~~~~~~~~~~~e~~l~~~lg~~~~~~~~~a~~le---~~ls~e~~~~L~~~L~ 121 (230)
T 1fx7_A 64 ------LTEKGRALAIAVMRKHRLAERLLVDVIGLPWEEVHAEACRWE---HVMSEDVERRLVKVLN 121 (230)
T ss_dssp ------ECHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHT---TTCCHHHHHHHHHHTT
T ss_pred ------ECHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHH---hcCCHHHHHHHHHHhC
Confidence 232 11111222233344566776665677888887755432 1489999999998874
No 58
>3kp7_A Transcriptional regulator TCAR; multiple drug resistance, biofilm, transcription regulation, binding, transcription regulator; 2.30A {Staphylococcus epidermidis RP62A} PDB: 3kp3_A* 3kp4_A* 3kp5_A* 3kp2_A* 3kp6_A
Probab=97.68 E-value=4.9e-05 Score=59.43 Aligned_cols=59 Identities=14% Similarity=0.212 Sum_probs=46.2
Q ss_pred CCChHHHHHHHHHHhhCCCcccHHHHHHHhhcCCChHHHHHHHHHHHhCCCceeee--cccCCCee
Q 026766 15 SLTDHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVV--NIHSKGKK 78 (233)
Q Consensus 15 ~L~~~e~lVy~~I~~aG~~GIw~~dik~~t~~~l~~~~v~k~LK~Le~k~lIK~vk--sV~~~~rK 78 (233)
+|+..|..|+.+| . +.|+..++|...+ ++++.+++++|+.||++|||...+ +-.+++.+
T Consensus 35 ~lt~~q~~iL~~l-~--~~~~t~~eLa~~l--~~~~~~vs~~l~~Le~~Glv~r~~~~~~~D~R~~ 95 (151)
T 3kp7_A 35 GISAEQSHVLNML-S--IEALTVGQITEKQ--GVNKAAVSRRVKKLLNAELVKLEKPDSNTDQRLK 95 (151)
T ss_dssp TCCHHHHHHHHHH-H--HSCBCHHHHHHHH--CSCSSHHHHHHHHHHHTTSEEC-----------C
T ss_pred CCCHHHHHHHHHH-H--cCCcCHHHHHHHH--CCCHHHHHHHHHHHHHCCCEEeeCCCCCCCCCee
Confidence 6899999999999 4 4569999999999 999999999999999999999855 66654333
No 59
>3lmm_A Uncharacterized protein; multi-domained alpha-beta protein, structural genomics, PSI- 2, protein structure initiative; 3.00A {Corynebacterium diphtheriae}
Probab=97.66 E-value=6.4e-05 Score=73.15 Aligned_cols=127 Identities=9% Similarity=0.063 Sum_probs=52.6
Q ss_pred CCCChHHHHHHHHHHhhCCCcccHHHHHHHhhcCCChHHHHHHHHHHHh-----CCCceeeecccCCCeeeEEeec----
Q 026766 14 DSLTDHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQN-----KSLIKEVVNIHSKGKKHLMAVE---- 84 (233)
Q Consensus 14 ~~L~~~e~lVy~~I~~aG~~GIw~~dik~~t~~~l~~~~v~k~LK~Le~-----k~lIK~vksV~~~~rK~Yml~~---- 84 (233)
..++..+.+|+.+|.+.+. |..++|...+ +++.+++++.|++|.+ +|||.... ..|+|..
T Consensus 426 ~~~~~~~~~iL~~l~~~~~--it~~~la~~l--~~s~~~~~~~L~~L~~~~~~~~glie~~g-------~~y~L~~~~~~ 494 (583)
T 3lmm_A 426 RQDDYRIAIVLYLLFQRPF--ITIDVVARGL--QSGKEAARNALEAARQTTVAGAPLIIAHD-------GVWLLGNACRE 494 (583)
T ss_dssp GTTCHHHHHHHHHHHHSSS--BCHHHHHHHH--TSCHHHHHHHHHHHHTCEETTEESEEEET-------TEEEECHHHHH
T ss_pred cccchhHHHHHHHHHHCCC--cCHHHHHHHh--CcCHHHHHHHHHHHHhhhccccceEEEeC-------CEEEECHHHHH
Confidence 3466788999999999887 9999999999 9999999999999999 88998863 3577754
Q ss_pred -cccCCCcccC-CcccCCCCCHHHHHHHHHHHHHHhhhCCCCCHHHHHHHHHHhCCcccccCHHHHHHHHHHHhcCCeEE
Q 026766 85 -FEPSKEISGG-AWYSEGSLDTEFIKVVKSQCLKQIIKLKVATLEGISDSIKRSGAFKVDLTKQQIEEIVRALVLDNQIM 162 (233)
Q Consensus 85 -lePs~eiTGG-~wy~d~e~D~efI~~l~~~~~~~i~~~~~~T~~~I~~~I~~~~i~~~~Ls~~di~~il~~Lv~Dg~ie 162 (233)
+.+..+...- .+|.. +|. +.+.+.+++||+.++.+|..||.+.+. ||..++..+|+.|+-+|+|+
T Consensus 495 ~~~~~~~~~~~~~~~~~--~~~---~~~~~~I~~~l~~~g~it~~di~~l~~--------ls~~qa~~~L~~Lv~~G~l~ 561 (583)
T 3lmm_A 495 ILRKVEPSPFSPVRYLS--TDQ---AELTNAAMLWLSEVGDLATSDLMAMCG--------VSRGTAKACVDGLVDEERVV 561 (583)
T ss_dssp HHTSCC--------------------------------------------------------------------------
T ss_pred Hhccccccccccccccc--CCh---hHHHHHHHHHHHHcCCcCHHHHHHHHC--------CCHHHHHHHHHHHHHCCcEE
Confidence 1111110000 12321 222 356678899999988888888887544 78888999999999999997
Q ss_pred EE
Q 026766 163 EV 164 (233)
Q Consensus 163 ~v 164 (233)
.+
T Consensus 562 ~~ 563 (583)
T 3lmm_A 562 AV 563 (583)
T ss_dssp --
T ss_pred Ee
Confidence 75
No 60
>2fxa_A Protease production regulatory protein HPR; protease porduction, regulation, STR genomics, PSI, protein structure initiative; HET: PGE P6G 1PE; 2.40A {Bacillus subtilis} SCOP: a.4.5.28
Probab=97.65 E-value=0.0001 Score=61.94 Aligned_cols=63 Identities=11% Similarity=0.062 Sum_probs=52.0
Q ss_pred CCCChHHHHHHHHHHhhCCCcccHHHHHHHhhcCCChHHHHHHHHHHHhCCCceeeecccCCCeeeE
Q 026766 14 DSLTDHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVVNIHSKGKKHL 80 (233)
Q Consensus 14 ~~L~~~e~lVy~~I~~aG~~GIw~~dik~~t~~~l~~~~v~k~LK~Le~k~lIK~vksV~~~~rK~Y 80 (233)
.+|+..|..|+.+|...| |+.+++|...+ +++..+++++|+.||++|||.+.++-.+++.+.+
T Consensus 44 ~gLt~~q~~iL~~L~~~~--~~t~~eLa~~l--~i~~stvs~~l~~Le~~GlV~r~~~~~DrR~~~l 106 (207)
T 2fxa_A 44 YDLNINEHHILWIAYQLN--GASISEIAKFG--VMHVSTAFNFSKKLEERGYLRFSKRLNDKRNTYV 106 (207)
T ss_dssp GTCCHHHHHHHHHHHHHT--SEEHHHHHHHT--TCCHHHHHHHHHHHHHHTSEEEECC------CEE
T ss_pred cCCCHHHHHHHHHHHHCC--CcCHHHHHHHH--CCCHHHHHHHHHHHHHCCCEEEecCCCCCceEEE
Confidence 479999999999998876 69999999999 9999999999999999999999988776444433
No 61
>1ku9_A Hypothetical protein MJ223; putative transcription factor, homodimeric winged-helix fold, structural genomics, PSI; 2.80A {Methanocaldococcus jannaschii} SCOP: a.4.5.36
Probab=97.65 E-value=0.00019 Score=55.01 Aligned_cols=64 Identities=19% Similarity=0.259 Sum_probs=52.8
Q ss_pred CCCChHHHHHHHHHHhhCCCcccHHHHHHHhhcCCChHHHHHHHHHHHhCCCceeeecccCCCeeeEE
Q 026766 14 DSLTDHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVVNIHSKGKKHLM 81 (233)
Q Consensus 14 ~~L~~~e~lVy~~I~~aG~~GIw~~dik~~t~~~l~~~~v~k~LK~Le~k~lIK~vksV~~~~rK~Ym 81 (233)
-+|++.+..|+.+|..+ +.++..++|.+.+ +++.+++++.|+.|+++|+|...++-.. +|.+|+
T Consensus 22 ~gl~~~~~~il~~L~~~-~~~~t~~ela~~l--~~~~stvs~~l~~L~~~G~v~r~~~~~d-~r~~~~ 85 (152)
T 1ku9_A 22 HGLNKSVGAVYAILYLS-DKPLTISDIMEEL--KISKGNVSMSLKKLEELGFVRKVWIKGE-RKNYYE 85 (152)
T ss_dssp TTCCHHHHHHHHHHHHC-SSCEEHHHHHHHH--TCCHHHHHHHHHHHHHTTSEEEECCTTC-SSCEEE
T ss_pred cCCChhHHHHHHHHHHc-CCCCCHHHHHHHH--CcCHHHHHHHHHHHHHCCCEEEEecCCC-ceEEEe
Confidence 36899999999999533 3579999999999 9999999999999999999998776553 344444
No 62
>3boq_A Transcriptional regulator, MARR family; MARR famil structural genomics, PSI-2, protein structure initiative; 2.39A {Silicibacter pomeroyi dss-3}
Probab=97.65 E-value=5.6e-05 Score=59.39 Aligned_cols=63 Identities=8% Similarity=0.104 Sum_probs=48.4
Q ss_pred CCChHHHHHHHHHHhhCCCcccHHHHHHHhhcCCChHHHHHHHHHHHhCCCceeeecccCCCeeeE
Q 026766 15 SLTDHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVVNIHSKGKKHL 80 (233)
Q Consensus 15 ~L~~~e~lVy~~I~~aG~~GIw~~dik~~t~~~l~~~~v~k~LK~Le~k~lIK~vksV~~~~rK~Y 80 (233)
+|+..|..|+.+|... +.|+..++|.+.+ +++..++++.|+.||++|||...++-.+++.+.+
T Consensus 44 ~l~~~~~~iL~~L~~~-~~~~~~~ela~~l--~i~~~tvs~~l~~Le~~Gli~r~~~~~d~R~~~~ 106 (160)
T 3boq_A 44 GLSLAKFDAMAQLARN-PDGLSMGKLSGAL--KVTNGNVSGLVNRLIKDGMVVKAMSADDRRSFSA 106 (160)
T ss_dssp SCCHHHHHHHHHHHHC-TTCEEHHHHHHHC--SSCCSCHHHHHHHHHHHTSEEEC--------CEE
T ss_pred CCCHHHHHHHHHHHHc-CCCCCHHHHHHHH--CCChhhHHHHHHHHHHCCCEEeecCCCCCCeEEE
Confidence 6899999999999432 3479999999999 9999999999999999999999887775444443
No 63
>1p4x_A Staphylococcal accessory regulator A homologue; winged-helix protein, transcription; 2.20A {Staphylococcus aureus} SCOP: a.4.5.28 a.4.5.28
Probab=97.65 E-value=0.00012 Score=64.01 Aligned_cols=62 Identities=13% Similarity=0.157 Sum_probs=56.9
Q ss_pred CCCChHHHHHHHHHHhhCCCcccHHHHHHHhhcCCChHHHHHHHHHHHhCCCceeeecccCCCe
Q 026766 14 DSLTDHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVVNIHSKGK 77 (233)
Q Consensus 14 ~~L~~~e~lVy~~I~~aG~~GIw~~dik~~t~~~l~~~~v~k~LK~Le~k~lIK~vksV~~~~r 77 (233)
-+|+..|..|+..|..+++.++.+++|...+ ++++.+++++|+.||++|||.+..+-..++.
T Consensus 154 ~gLt~~q~~vL~~L~~~~~~~~t~~eLa~~l--~i~~~tvt~~v~rLe~~GlV~R~~~~~DrR~ 215 (250)
T 1p4x_A 154 LTLSFVEFTILAIITSQNKNIVLLKDLIETI--HHKYPQTVRALNNLKKQGYLIKERSTEDERK 215 (250)
T ss_dssp CSSCHHHHHHHHHHHTTTTCCEEHHHHHHHS--SSCHHHHHHHHHHHHHHTSSEEEECSSSTTC
T ss_pred CCCCHHHHHHHHHHHhCCCCCcCHHHHHHHH--CCChhhHHHHHHHHHHCCCEEeeCCCCCCCe
Confidence 3799999999999998887789999999999 9999999999999999999999999886433
No 64
>1tbx_A ORF F-93, hypothetical 11.0 kDa protein; sulfolobus spindle virus, winged helix, fusellovirus; 2.70A {Sulfolobus virus 1} SCOP: a.4.5.48
Probab=97.64 E-value=9.1e-05 Score=54.56 Aligned_cols=55 Identities=18% Similarity=0.219 Sum_probs=48.2
Q ss_pred CCCChHHHHHHHHHHhhCCCcccHHHH----HHHhhcCCChHHHHHHHHHHHhCCCceeeecc
Q 026766 14 DSLTDHERLIYDVIRSKQDMGIWTRDM----KRELRVNLPDNIVTKSIKSLQNKSLIKEVVNI 72 (233)
Q Consensus 14 ~~L~~~e~lVy~~I~~aG~~GIw~~di----k~~t~~~l~~~~v~k~LK~Le~k~lIK~vksV 72 (233)
.+|+..|..|+..|... .|+..++| ...+ ++++.+|++.|+.||++|||.+..+-
T Consensus 4 ~~lt~~q~~iL~~l~~~--~~~~~~el~~~la~~l--~is~~tvs~~l~~Le~~gli~r~~~~ 62 (99)
T 1tbx_A 4 TPFFYPEAIVLAYLYDN--EGIATYDLYKKVNAEF--PMSTATFYDAKKFLIQEGFVKERQER 62 (99)
T ss_dssp CSSBCHHHHHHHHHTTC--TTCBHHHHHHHHHTTS--CCCHHHHHHHHHHHHHTTSEEEEEET
T ss_pred CCCCHHHHHHHHHHHHc--CCcCHHHHHHHHHHHc--CCCHHHHHHHHHHHHHCCCEEEEecC
Confidence 36889999999999764 46999999 8888 99999999999999999999887653
No 65
>2d1h_A ST1889, 109AA long hypothetical transcriptional regulator; helix-turn-helix, intermolecular and intramolecular S-S bond structural genomics; 2.05A {Sulfolobus tokodaii} SCOP: a.4.5.50
Probab=97.63 E-value=0.00047 Score=50.34 Aligned_cols=58 Identities=16% Similarity=0.166 Sum_probs=46.6
Q ss_pred CCCChHHHHHHHHHHhhCCCcccHHHHHHHhhcCCChHHHHHHHHHHHhCCCceeeecccC
Q 026766 14 DSLTDHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVVNIHS 74 (233)
Q Consensus 14 ~~L~~~e~lVy~~I~~aG~~GIw~~dik~~t~~~l~~~~v~k~LK~Le~k~lIK~vksV~~ 74 (233)
.+|++.+..++..+... +.++...+|.+.+ +++..+|+++|+.|+++|+|.....-..
T Consensus 17 ~~l~~~~~~~l~~l~~~-~~~~t~~ela~~l--~is~~tv~~~l~~L~~~g~v~~~~~~~~ 74 (109)
T 2d1h_A 17 YKITDTDVAVLLKMVEI-EKPITSEELADIF--KLSKTTVENSLKKLIELGLVVRTKTEGK 74 (109)
T ss_dssp HTCCHHHHHHHHHHHHH-CSCEEHHHHHHHH--TCCHHHHHHHHHHHHHTTSEEEEEC---
T ss_pred hcCCHHHHHHHHHHHHc-CCCCCHHHHHHHH--CcCHHHHHHHHHHHHHCCCeEeeccccC
Confidence 46888877776655542 4579999999999 9999999999999999999999876443
No 66
>2k4b_A Transcriptional regulator; DNA binding protein, winged helix; NMR {Lactococcus lactis subsp}
Probab=97.63 E-value=7.9e-05 Score=56.70 Aligned_cols=63 Identities=13% Similarity=0.099 Sum_probs=51.6
Q ss_pred CCCCChHHHHHHHHHHhhCCCcccHHHHHHHhhc--CCChHHHHHHHHHHHhCCCceeeecccCCCeeeE
Q 026766 13 SDSLTDHERLIYDVIRSKQDMGIWTRDMKRELRV--NLPDNIVTKSIKSLQNKSLIKEVVNIHSKGKKHL 80 (233)
Q Consensus 13 ~~~L~~~e~lVy~~I~~aG~~GIw~~dik~~t~~--~l~~~~v~k~LK~Le~k~lIK~vksV~~~~rK~Y 80 (233)
..+|++.|..|+.+|-+.| ++.++||.++++. ++..++|++.|+.||+||||++.++ .+..+|
T Consensus 30 ~~~LT~~e~~VL~~L~~~~--~~t~~eL~~~l~~~~~~s~sTVt~~L~rLe~KGlV~R~~~---gR~~~Y 94 (99)
T 2k4b_A 30 EFNVSNAELIVMRVIWSLG--EARVDEIYAQIPQELEWSLATVKTLLGRLVKKEMLSTEKE---GRKFVY 94 (99)
T ss_dssp -CCCCCSCSHHHHHHHHHS--CEEHHHHHHTCCGGGCCCHHHHHHHHHHHHHTTSCEEEEE---TTEEEE
T ss_pred CCCCCHHHHHHHHHHHhCC--CCCHHHHHHHHhcccCCCHhhHHHHHHHHHHCCCEEEEeC---CCEEEE
Confidence 3469999999999999855 7999999999922 3678999999999999999999764 344455
No 67
>2v79_A DNA replication protein DNAD; primosome, DNA-binding protein; HET: DNA; 2.00A {Bacillus subtilis}
Probab=97.61 E-value=0.0001 Score=58.96 Aligned_cols=70 Identities=10% Similarity=0.112 Sum_probs=57.6
Q ss_pred CCChHHHHHHHHHHh---hCCCcccHHHHHHHhhcCCChHHHHHHHHHHHhCCCceeeecccCCCeeeEEeecccc
Q 026766 15 SLTDHERLIYDVIRS---KQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVVNIHSKGKKHLMAVEFEP 87 (233)
Q Consensus 15 ~L~~~e~lVy~~I~~---aG~~GIw~~dik~~t~~~l~~~~v~k~LK~Le~k~lIK~vksV~~~~rK~Yml~~leP 87 (233)
+||+.|.+|+-.|.. .|+.+....+|.+++ +++.++|.++|..|++||+|........ +-+..-.|+|+|
T Consensus 29 gLs~~E~~lLl~L~~~~~~g~~~ps~~~LA~~~--~~s~~~v~~~L~~L~~KGlI~i~~~~d~-~g~~~~~ydL~p 101 (135)
T 2v79_A 29 GLNETELILLLKIKMHLEKGSYFPTPNQLQEGM--SISVEECTNRLRMFIQKGFLFIEECEDQ-NGIKFEKYSLQP 101 (135)
T ss_dssp TCCHHHHHHHHHHHHHHTTTCCSCCHHHHHTTS--SSCHHHHHHHHHHHHHHTSCEEEEEECT-TCCEEEEEECHH
T ss_pred CCCHHHHHHHHHHHHHHhcCCCCCCHHHHHHHH--CcCHHHHHHHHHHHHHCCCEEEEeEecC-CCceEEEeeHHH
Confidence 689999998888876 477889999999999 9999999999999999999987544333 244556677766
No 68
>1hsj_A Fusion protein consisting of staphylococcus accessary regulator protein R and maltose...; novel fold for DNA binding; HET: GLC; 2.30A {Escherichia coli} SCOP: a.4.5.28 c.94.1.1
Probab=97.61 E-value=9.5e-05 Score=68.32 Aligned_cols=64 Identities=14% Similarity=0.225 Sum_probs=57.7
Q ss_pred CCCChHHHHHHHHHHhhCCCcccHHHHHHHhhcCCChHHHHHHHHHHHhCCCceeeecccCCCeeeE
Q 026766 14 DSLTDHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVVNIHSKGKKHL 80 (233)
Q Consensus 14 ~~L~~~e~lVy~~I~~aG~~GIw~~dik~~t~~~l~~~~v~k~LK~Le~k~lIK~vksV~~~~rK~Y 80 (233)
-+||..|..|+.+|.+....|+.+++|.+++ ++...+|+++|++||++|||.+.++-+. +|.++
T Consensus 400 ~~lt~~q~~vl~~l~~~~~~~~~~~~l~~~~--~~~~~~~t~~~~~le~~g~v~r~~~~~D-~R~~~ 463 (487)
T 1hsj_A 400 FNLNYEEIYILNHILRSESNEISSKEIAKCS--EFKPYYLTKALQKLKDLKLLSKKRSLQD-ERTVI 463 (487)
T ss_dssp CCCCHHHHHHHHHHHTCSCSEEEHHHHHHSS--CCCHHHHHHHHHHHHTTTTSCCEECCSS-SSCCE
T ss_pred cCCCHHHHHHHHHHHhCCCCCcCHHHHHHHH--CCCHHHHHHHHHHHHHCCCEeecCCCCC-CCeEE
Confidence 4799999999999988766789999999999 9999999999999999999999999886 44444
No 69
>2fbk_A Transcriptional regulator, MARR family; winged-helix-turn-helix; 2.30A {Deinococcus radiodurans} SCOP: a.4.5.28
Probab=97.58 E-value=4.5e-05 Score=61.86 Aligned_cols=65 Identities=11% Similarity=0.131 Sum_probs=52.3
Q ss_pred CCCChHHHHHHHHHHhhCC-CcccHHHHHHHhhcCCChHHHHHHHHHHHhCCCceeeecccCCCeeeE
Q 026766 14 DSLTDHERLIYDVIRSKQD-MGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVVNIHSKGKKHL 80 (233)
Q Consensus 14 ~~L~~~e~lVy~~I~~aG~-~GIw~~dik~~t~~~l~~~~v~k~LK~Le~k~lIK~vksV~~~~rK~Y 80 (233)
.+|+..|..|+.+|...|. .|+..++|...+ +++..+|++.|+.||++|||...++-..++.+.+
T Consensus 65 ~glt~~~~~iL~~L~~~~~~~~~t~~eLa~~l--~is~~tvs~~l~~Le~~GlV~r~~~~~DrR~~~~ 130 (181)
T 2fbk_A 65 SGLNAAGWDLLLTLYRSAPPEGLRPTELSALA--AISGPSTSNRIVRLLEKGLIERREDERDRRSASI 130 (181)
T ss_dssp TTCCHHHHHHHHHHHHHCCSSCBCHHHHHHHC--SCCSGGGSSHHHHHHHHTSEECCC-------CCB
T ss_pred cCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHH--CCCHHHHHHHHHHHHHCcCEEecCCCCCCCeeEE
Confidence 3699999999999998875 489999999999 9999999999999999999999877665444433
No 70
>2qvo_A Uncharacterized protein AF_1382; PSI, structural genomics, southeast collaboratory for structural genomics; 1.85A {Archaeoglobus fulgidus dsm 4304} PDB: 3o3k_A 3ov8_A
Probab=97.56 E-value=0.00014 Score=53.58 Aligned_cols=64 Identities=13% Similarity=0.118 Sum_probs=48.2
Q ss_pred CCChHHHHHHHHHHhh--CCCcccHHHHHHHhhcCCChHHHHHHHHHHHhCCCceeeecccCCCeeeEEee
Q 026766 15 SLTDHERLIYDVIRSK--QDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVVNIHSKGKKHLMAV 83 (233)
Q Consensus 15 ~L~~~e~lVy~~I~~a--G~~GIw~~dik~~t~~~l~~~~v~k~LK~Le~k~lIK~vksV~~~~rK~Yml~ 83 (233)
.|+..+..|+..|... ++.++.+++|...+ +++..+++++|+.||++||| .+-.+++.+.|-|.
T Consensus 9 ~l~~~~~~iL~~l~~~~~~~~~~t~~eLa~~l--~i~~~tvs~~l~~Le~~Glv---~~~~d~R~~~v~LT 74 (95)
T 2qvo_A 9 LFKEKALEILMTIYYESLGGNDVYIQYIASKV--NSPHSYVWLIIKKFEEAKMV---ECELEGRTKIIRLT 74 (95)
T ss_dssp HSCHHHHHHHHHHHHHHHTTCCEEHHHHHHHS--SSCHHHHHHHHHHHHHTTSE---EEEEETTEEEEEEC
T ss_pred CCchhHHHHHHHHHHccCCCCCcCHHHHHHHH--CcCHHHHHHHHHHHHHCcCc---cCCCCCCeEEEEEC
Confidence 5777777776666443 33349999999999 99999999999999999999 33444455555443
No 71
>2x4h_A Hypothetical protein SSO2273; transcription; 2.30A {Sulfolobus solfataricus}
Probab=97.52 E-value=0.0009 Score=51.67 Aligned_cols=113 Identities=14% Similarity=0.160 Sum_probs=71.6
Q ss_pred CCCCChHHHHHHHHHHh--hCCCcccHHHHHHHhhcCCChHHHHHHHHHHHhCCCceeeecccCCCeeeEEeeccccCCC
Q 026766 13 SDSLTDHERLIYDVIRS--KQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVVNIHSKGKKHLMAVEFEPSKE 90 (233)
Q Consensus 13 ~~~L~~~e~lVy~~I~~--aG~~GIw~~dik~~t~~~l~~~~v~k~LK~Le~k~lIK~vksV~~~~rK~Yml~~lePs~e 90 (233)
+.+|++.+..++..|.. ..+.++..++|.+++ +++..+|+++|+.||++|||...+ + .|.| .|.
T Consensus 8 ~~~lt~~~~~~L~~l~~l~~~~~~~s~~ela~~l--~is~~tv~~~l~~Le~~Gli~r~~------~-~~~L---t~~-- 73 (139)
T 2x4h_A 8 MSNLSRREFSYLLTIKRYNDSGEGAKINRIAKDL--KIAPSSVFEEVSHLEEKGLVKKKE------D-GVWI---TNN-- 73 (139)
T ss_dssp ---CCHHHHHHHHHHHHHHTTTSCBCHHHHHHHH--TCCHHHHHHHHHHHHHTTSEEEET------T-EEEE---CHH--
T ss_pred HhhcCHHHHHHHHHHHHHHhcCCCcCHHHHHHHh--CCChHHHHHHHHHHHHCCCEEecC------C-eEEE---Chh--
Confidence 45788877777777764 235679999999999 999999999999999999998754 2 2222 221
Q ss_pred cccCCcccCCCCCHHHHHHHH---HHHHHHhhhCCCCCHHHHHHHHHHhCCcccccCHHHHHHHHHHH
Q 026766 91 ISGGAWYSEGSLDTEFIKVVK---SQCLKQIIKLKVATLEGISDSIKRSGAFKVDLTKQQIEEIVRAL 155 (233)
Q Consensus 91 iTGG~wy~d~e~D~efI~~l~---~~~~~~i~~~~~~T~~~I~~~I~~~~i~~~~Ls~~di~~il~~L 155 (233)
| .++...+. +....++.. ...+.+++..+..... -.++.+.++.|.+.|
T Consensus 74 --g----------~~~~~~~~~~~~~~~~~~~~-~~~~~~e~~~~~~~l~---~~~~~~~~~~L~~~l 125 (139)
T 2x4h_A 74 --G----------TRSINYLIKAHRVIEILLVN-IGIDKQTACEYSKQFD---YLIPEEIIDKLYNYL 125 (139)
T ss_dssp --H----------HHHHHHHHHHHHHHHHHHHH-HTCCHHHHHHHHHHHG---GGSCHHHHHHHHHHT
T ss_pred --H----------HHHHHHHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHH---hcCCHHHHHHHHHHh
Confidence 1 11222222 233444444 2356777766655433 236777777776665
No 72
>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A
Probab=97.47 E-value=0.00036 Score=51.33 Aligned_cols=61 Identities=15% Similarity=0.194 Sum_probs=50.2
Q ss_pred hHHHHHHHHHHhhC-CCcccHHHHHHHhhcCCChHHHHHHHHHHHhCCCceeeecccCCCeeeEEeec
Q 026766 18 DHERLIYDVIRSKQ-DMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVVNIHSKGKKHLMAVE 84 (233)
Q Consensus 18 ~~e~lVy~~I~~aG-~~GIw~~dik~~t~~~l~~~~v~k~LK~Le~k~lIK~vksV~~~~rK~Yml~~ 84 (233)
+-++.|+.+|.+.| .+++..++|.+++ +++.++|++.|++|++.|+|+.+. .++-.|.+..
T Consensus 10 ~~~~~IL~~L~~~~pg~~~t~~eLA~~L--gvsr~tV~~~L~~Le~~G~I~~~g----~~~~~W~i~~ 71 (81)
T 1qbj_A 10 DQEQRILKFLEELGEGKATTAHDLSGKL--GTPKKEINRVLYSLAKKGKLQKEA----GTPPLWKIAV 71 (81)
T ss_dssp HHHHHHHHHHHHHCTTCCBCHHHHHHHH--TCCHHHHHHHHHHHHHTTSEEEES----SSSCEEEEC-
T ss_pred HHHHHHHHHHHHcCCCCCcCHHHHHHHH--CcCHHHHHHHHHHHHHCCCEEecC----CCCCeeEEeC
Confidence 35788999999888 6779999999999 999999999999999999998763 2234555543
No 73
>2w25_A Probable transcriptional regulatory protein; transcription regulation, mutant, RV3291C, Glu104Ala, DNA-binding; 2.15A {Mycobacterium tuberculosis} PDB: 2vbw_A* 2vbx_A* 2vby_A* 2vbz_A* 2vc0_A 2vc1_A 2w24_A 2ivm_A 2w29_A 2qz8_A
Probab=97.44 E-value=0.00061 Score=53.93 Aligned_cols=58 Identities=10% Similarity=0.213 Sum_probs=51.5
Q ss_pred CCChHHHHHHHHHHhhCCCcccHHHHHHHhhcCCChHHHHHHHHHHHhCCCceeeecccCCC
Q 026766 15 SLTDHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVVNIHSKG 76 (233)
Q Consensus 15 ~L~~~e~lVy~~I~~aG~~GIw~~dik~~t~~~l~~~~v~k~LK~Le~k~lIK~vksV~~~~ 76 (233)
.|++.+..|+.++...|. +..++|.+++ +++..++++.|+.|+++|+|+.....-++.
T Consensus 4 ~ld~~~~~iL~~L~~~~~--~s~~ela~~l--g~s~~tv~~~l~~L~~~G~i~~~~~~~d~~ 61 (150)
T 2w25_A 4 ALDDIDRILVRELAADGR--ATLSELATRA--GLSVSAVQSRVRRLESRGVVQGYSARINPE 61 (150)
T ss_dssp CCCHHHHHHHHHHHHCTT--CCHHHHHHHH--TSCHHHHHHHHHHHHHTTSEEEEEEEECTG
T ss_pred ccCHHHHHHHHHHHHcCC--CCHHHHHHHH--CcCHHHHHHHHHHHHHCCCEEEEEeccChh
Confidence 488989999999987664 9999999999 999999999999999999999888766544
No 74
>3cuo_A Uncharacterized HTH-type transcriptional regulato; DNA-binding transcriptional regulator, structural genomics, MCSG; 2.00A {Escherichia coli K12}
Probab=97.43 E-value=0.00069 Score=49.11 Aligned_cols=58 Identities=12% Similarity=0.200 Sum_probs=46.3
Q ss_pred hHHHHHHHHHHhhCCCcccHHHHHHHhhcCCChHHHHHHHHHHHhCCCceeeecccCCCeeeEEe
Q 026766 18 DHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVVNIHSKGKKHLMA 82 (233)
Q Consensus 18 ~~e~lVy~~I~~aG~~GIw~~dik~~t~~~l~~~~v~k~LK~Le~k~lIK~vksV~~~~rK~Yml 82 (233)
+.+..|+.+|.+ +.++..++|.+.+ ++++.++++.|+.|++.|+|...+. .+++.|-+
T Consensus 24 ~~~~~il~~l~~--~~~~s~~ela~~l--~is~~tvs~~l~~L~~~glv~~~~~---~r~~~y~l 81 (99)
T 3cuo_A 24 PKRLLILCMLSG--SPGTSAGELTRIT--GLSASATSQHLARMRDEGLIDSQRD---AQRILYSI 81 (99)
T ss_dssp HHHHHHHHHHTT--CCSEEHHHHHHHH--CCCHHHHHHHHHHHHHTTSEEEEEC---SSCEEEEE
T ss_pred hHHHHHHHHHHh--CCCcCHHHHHHHH--CcCHHHHHHHHHHHHHCCCEEEEec---CCEEEEEE
Confidence 456678888854 3469999999999 9999999999999999999988762 34445543
No 75
>2cfx_A HTH-type transcriptional regulator LRPC; transcriptional regulation, DNA binding, FFRP; 2.4A {Bacillus subtilis} SCOP: a.4.5.32 d.58.4.2
Probab=97.36 E-value=0.00078 Score=53.12 Aligned_cols=57 Identities=18% Similarity=0.296 Sum_probs=50.3
Q ss_pred CCChHHHHHHHHHHhhCCCcccHHHHHHHhhcCCChHHHHHHHHHHHhCCCceeeecccCC
Q 026766 15 SLTDHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVVNIHSK 75 (233)
Q Consensus 15 ~L~~~e~lVy~~I~~aG~~GIw~~dik~~t~~~l~~~~v~k~LK~Le~k~lIK~vksV~~~ 75 (233)
.|++-++.|+.++.+.|. +..++|.+++ |++..++++.|+.|+++|+|+.....-++
T Consensus 2 ~ld~~d~~il~~L~~~~~--~s~~ela~~l--g~s~~tv~~~l~~L~~~G~i~~~~~~~d~ 58 (144)
T 2cfx_A 2 KLDQIDLNIIEELKKDSR--LSMRELGRKI--KLSPPSVTERVRQLESFGIIKQYTLEVDQ 58 (144)
T ss_dssp CCCHHHHHHHHHHHHCSC--CCHHHHHHHH--TCCHHHHHHHHHHHHHTTSEEEEEEEECT
T ss_pred CCCHHHHHHHHHHHHcCC--CCHHHHHHHH--CcCHHHHHHHHHHHHHCCCeEEEecccCh
Confidence 388889999999987765 9999999999 99999999999999999999987655443
No 76
>4fx0_A Probable transcriptional repressor protein; helix-turn-helix, DNA binding, transcription regulator; 2.70A {Mycobacterium tuberculosis} PDB: 4fx4_A*
Probab=97.34 E-value=0.0003 Score=55.78 Aligned_cols=58 Identities=12% Similarity=0.264 Sum_probs=43.2
Q ss_pred CCCChHHHHHHHHHHhhC---CCcccHHHHHHHhhcCCChHHHHHHHHHHHhCCCceeeecccC
Q 026766 14 DSLTDHERLIYDVIRSKQ---DMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVVNIHS 74 (233)
Q Consensus 14 ~~L~~~e~lVy~~I~~aG---~~GIw~~dik~~t~~~l~~~~v~k~LK~Le~k~lIK~vksV~~ 74 (233)
-+||..|..|+.+|...+ +.++.+++|.+.+ +++..++++.|+.||++||| +..+-.+
T Consensus 29 ~gLt~~q~~vL~~l~~~~~~~~~~~t~~eLa~~l--~~~~~tvsr~v~~Le~~glV-r~~~~~D 89 (148)
T 4fx0_A 29 SGLTNTQFSTLAVISLSEGSAGIDLTMSELAARI--GVERTTLTRNLEVMRRDGLV-RVMAGAD 89 (148)
T ss_dssp GTCCHHHHHHHHHHHC---------CHHHHHHHH--TCCHHHHHHHHHHHHHTTSB-C------
T ss_pred cCCCHHHHHHHHHHHHhcCCCCCCcCHHHHHHHH--CCChhhHHHHHHHHHHCCCE-EeeCCCC
Confidence 379999999999998654 3569999999999 99999999999999999999 5566443
No 77
>2ia0_A Putative HTH-type transcriptional regulator PF086; ASNC, PSI, structural genomics, southeast collaboratory for structural genomics; 2.37A {Pyrococcus furiosus}
Probab=97.32 E-value=0.00094 Score=54.70 Aligned_cols=72 Identities=19% Similarity=0.314 Sum_probs=56.9
Q ss_pred CCCCCChHHHHHHHHHHhhCCCcccHHHHHHHhhcCCChHHHHHHHHHHHhCCCceeeecccCCCe----eeEEeecccc
Q 026766 12 PSDSLTDHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVVNIHSKGK----KHLMAVEFEP 87 (233)
Q Consensus 12 ~~~~L~~~e~lVy~~I~~aG~~GIw~~dik~~t~~~l~~~~v~k~LK~Le~k~lIK~vksV~~~~r----K~Yml~~leP 87 (233)
....|++.++.|+.++...|. +..++|.+++ +++..++++.|+.|+++|+|+.+..+-++.+ ..|+...++|
T Consensus 11 ~~~~ld~~d~~IL~~L~~~~~--~s~~eLA~~l--glS~~tv~~~l~~L~~~G~I~~~~~~~d~~~lG~~~a~v~v~~~~ 86 (171)
T 2ia0_A 11 SEIHLDDLDRNILRLLKKDAR--LTISELSEQL--KKPESTIHFRIKKLQERGVIERYTIILGEQLKPKHLALIVLEVGK 86 (171)
T ss_dssp ---CCCHHHHHHHHHHHHCTT--CCHHHHHHHH--TSCHHHHHHHHHHHHHTTSEEEEEEEECTTTSCSEEEEEEEEESC
T ss_pred CcCCCCHHHHHHHHHHHHcCC--CCHHHHHHHH--CcCHHHHHHHHHHHHHCCCEEeecccCCHHHhhcceEEEEEEECC
Confidence 455689999999999988764 9999999999 9999999999999999999998776554432 3455445554
No 78
>2fsw_A PG_0823 protein; alpha-beta structure, helix-turn-helix, winged-helix-turn-HE structural genomics, PSI, protein structure initiative; HET: MSE; 2.16A {Porphyromonas gingivalis} SCOP: a.4.5.69
Probab=97.26 E-value=0.00088 Score=50.37 Aligned_cols=59 Identities=20% Similarity=0.208 Sum_probs=48.6
Q ss_pred HHHHHHHhhCCCcccHHHHHHHhhcC-CChHHHHHHHHHHHhCCCceeeecccCCCeeeEEeecc
Q 026766 22 LIYDVIRSKQDMGIWTRDMKRELRVN-LPDNIVTKSIKSLQNKSLIKEVVNIHSKGKKHLMAVEF 85 (233)
Q Consensus 22 lVy~~I~~aG~~GIw~~dik~~t~~~-l~~~~v~k~LK~Le~k~lIK~vksV~~~~rK~Yml~~l 85 (233)
.|+..+. +.++...+|.+.+ + +++.+|++.|+.||++|||.+...-..+.+..|-|.+.
T Consensus 29 ~IL~~L~---~~~~~~~eL~~~l--~gis~~~ls~~L~~Le~~GlV~r~~~~~d~r~~~y~LT~~ 88 (107)
T 2fsw_A 29 LIIFQIN---RRIIRYGELKRAI--PGISEKMLIDELKFLCGKGLIKKKQYPEVPPRVEYSLTPL 88 (107)
T ss_dssp HHHHHHT---TSCEEHHHHHHHS--TTCCHHHHHHHHHHHHHTTSEEEEEECSSSCEEEEEECHH
T ss_pred HHHHHHH---hCCcCHHHHHHHc--ccCCHHHHHHHHHHHHHCCCEEEeecCCCCCeeEEEECcc
Confidence 3555553 4469999999999 8 99999999999999999999988877777777766653
No 79
>2p5v_A Transcriptional regulator, LRP/ASNC family; NMB0573, structu genomics; 1.99A {Neisseria meningitidis} PDB: 2p6s_A 2p6t_A
Probab=97.25 E-value=0.0014 Score=52.52 Aligned_cols=59 Identities=12% Similarity=0.267 Sum_probs=52.1
Q ss_pred CCCCChHHHHHHHHHHhhCCCcccHHHHHHHhhcCCChHHHHHHHHHHHhCCCceeeecccCC
Q 026766 13 SDSLTDHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVVNIHSK 75 (233)
Q Consensus 13 ~~~L~~~e~lVy~~I~~aG~~GIw~~dik~~t~~~l~~~~v~k~LK~Le~k~lIK~vksV~~~ 75 (233)
+..|++-++.|+.++...|. +..++|.+++ |++..++++.|+.|+++|+|+....+-++
T Consensus 5 ~~~ld~~~~~il~~L~~~~~--~s~~ela~~l--g~s~~tv~~~l~~L~~~G~i~~~~~~~d~ 63 (162)
T 2p5v_A 5 QLTLDKTDIKILQVLQENGR--LTNVELSERV--ALSPSPCLRRLKQLEDAGIVRQYAALLSP 63 (162)
T ss_dssp CCCCCHHHHHHHHHHHHCTT--CCHHHHHHHH--TSCHHHHHHHHHHHHHTTSEEEEEEEECT
T ss_pred ccCCCHHHHHHHHHHHHcCC--CCHHHHHHHH--CcCHHHHHHHHHHHHHCCCEeeecccCCh
Confidence 34589999999999988776 8999999999 99999999999999999999987765544
No 80
>2qq9_A Diphtheria toxin repressor; regulator, DTXR, helix-turn-helix, metal ION, ACT DNA-binding, ferrous iron, transcription; 1.71A {Corynebacterium diphtheriae} PDB: 2tdx_A 1ddn_A 1g3t_A 1g3s_A 1g3w_A 2qqa_A 2qqb_A 2dtr_A 1bi0_A 1bi2_A 1bi3_A 1dpr_A 1bi1_A 1fwz_A 1g3y_A 1c0w_A* 3glx_A 1p92_A 1xcv_A 1f5t_A ...
Probab=97.25 E-value=0.00083 Score=57.18 Aligned_cols=118 Identities=9% Similarity=0.135 Sum_probs=79.4
Q ss_pred CCCChHHHHHHHHHHhhCCCcccH--HHHHHHhhcCCChHHHHHHHHHHHhCCCceeeecccCCCeeeEEeeccccCCCc
Q 026766 14 DSLTDHERLIYDVIRSKQDMGIWT--RDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVVNIHSKGKKHLMAVEFEPSKEI 91 (233)
Q Consensus 14 ~~L~~~e~lVy~~I~~aG~~GIw~--~dik~~t~~~l~~~~v~k~LK~Le~k~lIK~vksV~~~~rK~Yml~~lePs~ei 91 (233)
.+||+.+..++..|...+..|+.+ ++|.+.+ ++.+.+++++|+.||++|||...++
T Consensus 2 ~~lt~~~e~yL~~i~~l~~~~~~~~~~~la~~l--~vs~~tvs~~l~~Le~~GlV~r~~~-------------------- 59 (226)
T 2qq9_A 2 KDLVATTEMYLRTIYELEEEGVTPLRARIAERL--EQSGPTVSQTVARMERDGLVVVASD-------------------- 59 (226)
T ss_dssp -CHHHHHHHHHHHHHHHHHHTCCCBHHHHHHHH--TCCHHHHHHHHHHHHHTTSEEECTT--------------------
T ss_pred CCCCHHHHHHHHHHHHHhhcCCCccHHHHHHHH--CCCHHHHHHHHHHHHHCCCEEEeCC--------------------
Confidence 467887777777777665567777 9999999 9999999999999999999987543
Q ss_pred ccCCcccC-CCCCHHHHHHHHHHHHHHhhhCCCCCHHHHHHHHHHhCCcccccCHHHHHHHHHHHhc
Q 026766 92 SGGAWYSE-GSLDTEFIKVVKSQCLKQIIKLKVATLEGISDSIKRSGAFKVDLTKQQIEEIVRALVL 157 (233)
Q Consensus 92 TGG~wy~d-~e~D~efI~~l~~~~~~~i~~~~~~T~~~I~~~I~~~~i~~~~Ls~~di~~il~~Lv~ 157 (233)
++..-|+ |.--.+-+....+....|+...-..+.+++++...... -.+|.+-++.|.+.|-+
T Consensus 60 -~~v~LT~~G~~~~~~~~~~~~~~e~~l~~~lgl~~ee~~~~a~~le---h~~s~~~~~~l~~~l~~ 122 (226)
T 2qq9_A 60 -RSLQMTPTGRTLATAVMRKHRLAERLLTDIIGLDINKVHDEADRWE---HVMSDEVERRLVKVLKD 122 (226)
T ss_dssp -SBEEECHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHT---TTCCHHHHHHHHHHSSC
T ss_pred -CCeEECHHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHH---hhCCHHHHHHHHHHhCC
Confidence 1222232 21112222223345556665533577888888777655 13677777777776643
No 81
>2dbb_A Putative HTH-type transcriptional regulator PH006; ASNC family, helix-turn-helix (HTH) domain, structural genom NPPSFA; 2.00A {Pyrococcus horikoshii}
Probab=97.19 E-value=0.00072 Score=53.48 Aligned_cols=58 Identities=14% Similarity=0.250 Sum_probs=50.5
Q ss_pred CCCChHHHHHHHHHHhhCCCcccHHHHHHHhhcCCChHHHHHHHHHHHhCCCceeeecccCC
Q 026766 14 DSLTDHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVVNIHSK 75 (233)
Q Consensus 14 ~~L~~~e~lVy~~I~~aG~~GIw~~dik~~t~~~l~~~~v~k~LK~Le~k~lIK~vksV~~~ 75 (233)
..|++-++.|+.++...|. +..++|.+++ |++..++++.|+.|+++|+|+.+..+-++
T Consensus 5 ~~ld~~d~~il~~L~~~~~--~s~~ela~~l--g~s~~tv~~~l~~L~~~G~i~~~~~~~~~ 62 (151)
T 2dbb_A 5 RKLDRVDMQLVKILSENSR--LTYRELADIL--NTTRQRIARRIDKLKKLGIIRKFTIIPDI 62 (151)
T ss_dssp -CCCHHHHHHHHHHHHCTT--CCHHHHHHHT--TSCHHHHHHHHHHHHHHTSEEEEEEEECT
T ss_pred hhCCHHHHHHHHHHHHcCC--CCHHHHHHHH--CcCHHHHHHHHHHHHHCCCEEEEEecCCh
Confidence 3589989999999987765 9999999999 99999999999999999999987665443
No 82
>2htj_A P fimbrial regulatory protein KS71A; winged helix-turn-helix, PAP PILI, transcription activator; NMR {Escherichia coli} SCOP: a.4.5.73
Probab=97.19 E-value=0.0014 Score=46.94 Aligned_cols=71 Identities=10% Similarity=0.071 Sum_probs=50.8
Q ss_pred HHHHHHHHhhCCCcccHHHHHHHhhcCCChHHHHHHHHHHHhCCCceeeecccCCCeeeEEeeccccCCCcccCCcccC
Q 026766 21 RLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVVNIHSKGKKHLMAVEFEPSKEISGGAWYSE 99 (233)
Q Consensus 21 ~lVy~~I~~aG~~GIw~~dik~~t~~~l~~~~v~k~LK~Le~k~lIK~vksV~~~~rK~Yml~~lePs~eiTGG~wy~d 99 (233)
..|+.+|.+.| ++..++|.+.+ +++.++|++.|+.|++.|+|..... .......|.+. +.....=.++|+.
T Consensus 3 ~~Il~~L~~~~--~~s~~eLa~~l--gvs~~tv~r~L~~L~~~GlI~~~~~-~~gr~~~y~l~---~~~~~~~~~~~~~ 73 (81)
T 2htj_A 3 NEILEFLNRHN--GGKTAEIAEAL--AVTDYQARYYLLLLEKAGMVQRSPL-RRGMATYWFLK---GEKQAGQSCSSTT 73 (81)
T ss_dssp HHHHHHHHHSC--CCCHHHHHHHH--TSCHHHHHHHHHHHHHHTSEEEECC-SSSSSCEEEES---SCSSSSCGGGGCS
T ss_pred HHHHHHHHHcC--CCCHHHHHHHH--CcCHHHHHHHHHHHHHCCCEEEecc-CCCCcEEEEEC---hhhhccHHHHHhH
Confidence 46788887765 49999999999 9999999999999999999986543 22233344443 2222223567764
No 83
>2f2e_A PA1607; transcription factor, helix-TRUN-helix, APC5613, structural genomics, PSI, protein structure initiative; HET: GLC; 1.85A {Pseudomonas aeruginosa} SCOP: a.4.5.69
Probab=97.18 E-value=0.00096 Score=53.27 Aligned_cols=59 Identities=14% Similarity=0.170 Sum_probs=48.4
Q ss_pred HHHHHHHHHhhCCCcccHHHHHHHhhcCCChHHHHHHHHHHHhCCCceeeecccCCCeeeEEeec
Q 026766 20 ERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVVNIHSKGKKHLMAVE 84 (233)
Q Consensus 20 e~lVy~~I~~aG~~GIw~~dik~~t~~~l~~~~v~k~LK~Le~k~lIK~vksV~~~~rK~Yml~~ 84 (233)
..+|+..+. +.++...+|.+.+ ++++++|++.|+.||++|||.+...-..+ +..|-|.+
T Consensus 26 ~l~IL~~L~---~g~~~~~eLa~~l--gis~~tls~~L~~Le~~GlI~r~~~~~d~-~~~y~LT~ 84 (146)
T 2f2e_A 26 SMLIVRDAF---EGLTRFGEFQKSL--GLAKNILAARLRNLVEHGVMVAVPAESGS-HQEYRLTD 84 (146)
T ss_dssp HHHHHHHHH---TTCCSHHHHHHHH--CCCHHHHHHHHHHHHHTTSEEEEECSSSS-CEEEEECH
T ss_pred HHHHHHHHH---hCCCCHHHHHHHh--CCCHHHHHHHHHHHHHCCCEEEEecCCCC-eEEEEECc
Confidence 344555664 3359999999999 99999999999999999999998887777 77776654
No 84
>2oqg_A Possible transcriptional regulator, ARSR family P; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 1.54A {Rhodococcus SP}
Probab=97.18 E-value=0.0017 Score=48.46 Aligned_cols=49 Identities=14% Similarity=0.226 Sum_probs=42.0
Q ss_pred hHHHHHHHHHHhhCCCcccHHHHHHHhhcCCChHHHHHHHHHHHhCCCceeeec
Q 026766 18 DHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVVN 71 (233)
Q Consensus 18 ~~e~lVy~~I~~aG~~GIw~~dik~~t~~~l~~~~v~k~LK~Le~k~lIK~vks 71 (233)
+-...|+.+| ..| ++..++|.+.+ ++++.+|++.|+.|+++|+|...+.
T Consensus 21 ~~r~~IL~~L-~~~--~~~~~ela~~l--~is~~tv~~~l~~L~~~gli~~~~~ 69 (114)
T 2oqg_A 21 ETRWEILTEL-GRA--DQSASSLATRL--PVSRQAIAKHLNALQACGLVESVKV 69 (114)
T ss_dssp HHHHHHHHHH-HHS--CBCHHHHHHHS--SSCHHHHHHHHHHHHHTTSEEEEEE
T ss_pred hHHHHHHHHH-HcC--CCCHHHHHHHH--CcCHHHHHHHHHHHHHCCCeeEEec
Confidence 3456688888 444 49999999999 9999999999999999999988664
No 85
>2xvc_A ESCRT-III, SSO0910; cell cycle, cell division, cytokinesis, winged-helix; 2.15A {Sulfolobus solfataricus}
Probab=97.15 E-value=0.001 Score=46.21 Aligned_cols=45 Identities=24% Similarity=0.299 Sum_probs=40.7
Q ss_pred HHHHHHHHHhhCCCcccHHHHHHHhhcCCChHHHHHHHHHHHhCCCce
Q 026766 20 ERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIK 67 (233)
Q Consensus 20 e~lVy~~I~~aG~~GIw~~dik~~t~~~l~~~~v~k~LK~Le~k~lIK 67 (233)
|..||++|+++|. =+..++..++. +.+...|-++|++|++||||+
T Consensus 12 e~~lL~yIr~sGG-ildI~~~a~ky--gV~kdeV~~~LrrLe~KGLI~ 56 (59)
T 2xvc_A 12 ERELLDYIVNNGG-FLDIEHFSKVY--GVEKQEVVKLLEALKNKGLIA 56 (59)
T ss_dssp HHHHHHHHHHTTS-EEEHHHHHHHH--CCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHHcCC-EEeHHHHHHHh--CCCHHHHHHHHHHHHHCCCee
Confidence 5689999998876 36789999999 999999999999999999997
No 86
>2obp_A Putative DNA-binding protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.70A {Ralstonia eutropha} SCOP: a.4.5.71
Probab=97.10 E-value=0.0032 Score=47.82 Aligned_cols=61 Identities=16% Similarity=0.229 Sum_probs=52.2
Q ss_pred CCCChHHHHHHHHHHhh----CCCcccHHHHHHHhhcCCChHHHHHHHHHHHhCCCceeeecccCCCee
Q 026766 14 DSLTDHERLIYDVIRSK----QDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVVNIHSKGKK 78 (233)
Q Consensus 14 ~~L~~~e~lVy~~I~~a----G~~GIw~~dik~~t~~~l~~~~v~k~LK~Le~k~lIK~vksV~~~~rK 78 (233)
.+|++-+..||..+..+ ....+...+|.+.+ .|++.+++|.|+.||.+|||...++ .. +|.
T Consensus 12 ~gl~~~q~~vL~~L~~~~~~~~g~~~s~~eLa~~l--~l~~stLsR~l~rLe~~GLV~r~~~-~D-~R~ 76 (96)
T 2obp_A 12 DGIDPAIVEVLLVLREAGIENGATPWSLPKIAKRA--QLPMSVLRRVLTQLQAAGLADVSVE-AD-GRG 76 (96)
T ss_dssp -CCCHHHHHHHHHHHHHTSSTTCCCCBHHHHHHHH--TCCHHHHHHHHHHHHHTTSEEEEEC-TT-SCE
T ss_pred cCCCHHHHHHHHHHHHHHhhCCCCCcCHHHHHHHh--CCchhhHHHHHHHHHHCCCEEeecC-CC-Cce
Confidence 46999999999988766 44558999999999 9999999999999999999998777 54 454
No 87
>2pn6_A ST1022, 150AA long hypothetical transcriptional regulator; LRP/ASNC family Gln binding, structural genomics, NPPSFA; HET: GLN; 1.44A {Sulfolobus tokodaii} PDB: 2efn_A* 2e7x_A* 2e7w_A* 2yx4_A* 2efq_A* 2pmh_A* 2yx7_A* 2efp_A* 2efo_A*
Probab=97.02 E-value=0.001 Score=52.45 Aligned_cols=56 Identities=16% Similarity=0.302 Sum_probs=48.5
Q ss_pred CChHHHHHHHHHHhhCCCcccHHHHHHHhhcCCChHHHHHHHHHHHhCCCceeeecccCC
Q 026766 16 LTDHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVVNIHSK 75 (233)
Q Consensus 16 L~~~e~lVy~~I~~aG~~GIw~~dik~~t~~~l~~~~v~k~LK~Le~k~lIK~vksV~~~ 75 (233)
|++-+..|+.++...| ++..++|.+++ |+++.++++.|+.|+++|+|+....+-++
T Consensus 1 ld~~~~~il~~L~~~~--~~~~~ela~~l--g~s~~tv~~~l~~L~~~G~i~~~~~~~d~ 56 (150)
T 2pn6_A 1 MDEIDLRILKILQYNA--KYSLDEIAREI--RIPKATLSYRIKKLEKDGVIKGYYAYINP 56 (150)
T ss_dssp CCHHHHHHHHHHTTCT--TSCHHHHHHHH--TSCHHHHHHHHHHHHHTTSSCCCCCCCCG
T ss_pred CChHHHHHHHHHHHcC--CCCHHHHHHHH--CcCHHHHHHHHHHHHHCCcEEEEEeecCH
Confidence 5677888999997766 49999999999 99999999999999999999987665443
No 88
>2cg4_A Regulatory protein ASNC; DNA binding, FFRP, LRP family, transcription, DNA- binding, transcription regulation; 2.4A {Escherichia coli} SCOP: a.4.5.32 d.58.4.2
Probab=97.02 E-value=0.0025 Score=50.42 Aligned_cols=56 Identities=7% Similarity=0.167 Sum_probs=49.8
Q ss_pred CCChHHHHHHHHHHhhCCCcccHHHHHHHhhcCCChHHHHHHHHHHHhCCCceeeecccC
Q 026766 15 SLTDHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVVNIHS 74 (233)
Q Consensus 15 ~L~~~e~lVy~~I~~aG~~GIw~~dik~~t~~~l~~~~v~k~LK~Le~k~lIK~vksV~~ 74 (233)
.|++-++.|+.++.+.|. +..++|.+++ |++..++.+.|+.|+++|+|+....+-+
T Consensus 5 ~ld~~d~~il~~L~~~~~--~s~~ela~~l--g~s~~tv~~~l~~L~~~G~i~~~~~~~~ 60 (152)
T 2cg4_A 5 LIDNLDRGILEALMGNAR--TAYAELAKQF--GVSPETIHVRVEKMKQAGIITGARIDVS 60 (152)
T ss_dssp CCCHHHHHHHHHHHHCTT--SCHHHHHHHH--TSCHHHHHHHHHHHHHHTSEEEEEEEEC
T ss_pred ccCHHHHHHHHHHHHcCC--CCHHHHHHHH--CcCHHHHHHHHHHHHHcCCcceEEEecC
Confidence 488888999999988765 9999999999 9999999999999999999998775433
No 89
>1xmk_A Double-stranded RNA-specific adenosine deaminase; winged helix-turn-helix, RNA editing, interferon, ADAR1, hydrolase; 0.97A {Homo sapiens} SCOP: a.4.5.19
Probab=97.02 E-value=0.001 Score=48.84 Aligned_cols=59 Identities=7% Similarity=0.101 Sum_probs=49.7
Q ss_pred hHHHHHHHHHHhhCCCcccHHHHHHHhhcCCChH-HHHHHHHHHHhCCCceeeecccCCCeeeEEeec
Q 026766 18 DHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDN-IVTKSIKSLQNKSLIKEVVNIHSKGKKHLMAVE 84 (233)
Q Consensus 18 ~~e~lVy~~I~~aG~~GIw~~dik~~t~~~l~~~-~v~k~LK~Le~k~lIK~vksV~~~~rK~Yml~~ 84 (233)
+-...|+.++...|. ...++|.+.+ +++.. .|++.|..||+.|||... ..+|.+|-|++
T Consensus 11 ~~~~~IL~~Lk~~g~--~ta~eiA~~L--git~~~aVr~hL~~Le~eGlV~~~----~~gRP~w~LT~ 70 (79)
T 1xmk_A 11 EIKEKICDYLFNVSD--SSALNLAKNI--GLTKARDINAVLIDMERQGDVYRQ----GTTPPIWHLTD 70 (79)
T ss_dssp HHHHHHHHHHHHTCC--EEHHHHHHHH--CGGGHHHHHHHHHHHHHTTSEEEE----CSSSCEEEECH
T ss_pred hHHHHHHHHHHHcCC--cCHHHHHHHc--CCCcHHHHHHHHHHHHHCCCEEec----CCCCCCeEeCH
Confidence 456788999999995 9999999999 99999 999999999999999853 24556776653
No 90
>2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2}
Probab=96.99 E-value=0.0033 Score=45.77 Aligned_cols=51 Identities=16% Similarity=0.202 Sum_probs=44.6
Q ss_pred HHHHHHHHHhh-----CCCcccHHHHHHHhhcCCChHHHHHHHHHHHhCCCceeeeccc
Q 026766 20 ERLIYDVIRSK-----QDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVVNIH 73 (233)
Q Consensus 20 e~lVy~~I~~a-----G~~GIw~~dik~~t~~~l~~~~v~k~LK~Le~k~lIK~vksV~ 73 (233)
.+.|+++|.+. |. -+..+||...+ ++...+|.+-|+.||++|+|+....-.
T Consensus 6 ~~~IL~~I~~~i~~~~g~-~psv~EIa~~l--gvS~~TVrr~L~~Le~kG~I~R~~ggr 61 (77)
T 2jt1_A 6 VTKIISIVQERQNMDDGA-PVKTRDIADAA--GLSIYQVRLYLEQLHDVGVLEKVNAGK 61 (77)
T ss_dssp HHHHHHHHHHHHHHHTTS-CEEHHHHHHHH--TCCHHHHHHHHHHHHHTTSEEEESCSS
T ss_pred HHHHHHHHHHHHhhccCC-CcCHHHHHHHH--CCCHHHHHHHHHHHHHCCcEEecCCCC
Confidence 56789999887 33 39999999999 999999999999999999999987544
No 91
>2cyy_A Putative HTH-type transcriptional regulator PH151; structural genomics, pyrococcus horikosii OT3, NPPSFA; HET: MSE GLN; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2
Probab=96.97 E-value=0.0013 Score=52.08 Aligned_cols=57 Identities=16% Similarity=0.345 Sum_probs=50.5
Q ss_pred CCChHHHHHHHHHHhhCCCcccHHHHHHHhhcCCChHHHHHHHHHHHhCCCceeeecccCC
Q 026766 15 SLTDHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVVNIHSK 75 (233)
Q Consensus 15 ~L~~~e~lVy~~I~~aG~~GIw~~dik~~t~~~l~~~~v~k~LK~Le~k~lIK~vksV~~~ 75 (233)
.|++.++.|+.++...|. +..++|.+++ |++..++++.|+.|+++|+|+.+..+-++
T Consensus 4 ~ld~~~~~il~~L~~~~~--~s~~ela~~l--g~s~~tv~~~l~~L~~~G~i~~~~~~~d~ 60 (151)
T 2cyy_A 4 PLDEIDKKIIKILQNDGK--APLREISKIT--GLAESTIHERIRKLRESGVIKKFTAIIDP 60 (151)
T ss_dssp CCCHHHHHHHHHHHHCTT--CCHHHHHHHH--CSCHHHHHHHHHHHHHHTSSCCCCCCCCG
T ss_pred CcCHHHHHHHHHHHHcCC--CCHHHHHHHH--CcCHHHHHHHHHHHHHCCCeEEEEEEECH
Confidence 488989999999988764 9999999999 99999999999999999999987655433
No 92
>2pg4_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, DNA binding protein; HET: MSE CIT; 2.21A {Aeropyrum pernix} SCOP: a.4.5.48
Probab=96.97 E-value=0.0014 Score=47.89 Aligned_cols=54 Identities=13% Similarity=0.025 Sum_probs=41.4
Q ss_pred HHHHHHHhhCCCcccHHHHHHHhhcCCChHH-HHHHHHHHHhCCCceeeecccCCCeeeE
Q 026766 22 LIYDVIRSKQDMGIWTRDMKRELRVNLPDNI-VTKSIKSLQNKSLIKEVVNIHSKGKKHL 80 (233)
Q Consensus 22 lVy~~I~~aG~~GIw~~dik~~t~~~l~~~~-v~k~LK~Le~k~lIK~vksV~~~~rK~Y 80 (233)
.++.+|...| .|+..++|.+.+ ++++.+ +++.|+.||++|||. .+-.+++.+.+
T Consensus 19 ~~L~~l~~~~-~~~t~~eLa~~l--~is~~t~vs~~l~~Le~~Glv~--~~~~drR~~~~ 73 (95)
T 2pg4_A 19 PTLLEFEKKG-YEPSLAEIVKAS--GVSEKTFFMGLKDRLIRAGLVK--EETLSYRVKTL 73 (95)
T ss_dssp HHHHHHHHTT-CCCCHHHHHHHH--CCCHHHHHTTHHHHHHHTTSEE--EEEEETTEEEE
T ss_pred HHHHHHHhcC-CCCCHHHHHHHH--CCCchHHHHHHHHHHHHCCCee--cCCCCCCeEEE
Confidence 3444555543 369999999999 999999 999999999999999 44444444444
No 93
>2heo_A Z-DNA binding protein 1; protein DLM1-Z-DNA complex, immune system-DNA complex; 1.70A {Mus musculus} PDB: 1j75_A
Probab=96.96 E-value=0.0024 Score=44.65 Aligned_cols=51 Identities=10% Similarity=0.195 Sum_probs=43.1
Q ss_pred CCChHHHHHHHHHHhhCCCcccHHHHHHHhhcCCChHHHHHHHHHHHhCCCcee
Q 026766 15 SLTDHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKE 68 (233)
Q Consensus 15 ~L~~~e~lVy~~I~~aG~~GIw~~dik~~t~~~l~~~~v~k~LK~Le~k~lIK~ 68 (233)
.|++-...|+.++.+.+ ..+...+|.+++ +++..+|.|.|+.|++.|+|.+
T Consensus 7 ~m~~~~~~IL~~L~~~~-~~~s~~eLA~~l--glsr~tv~~~l~~L~~~G~I~~ 57 (67)
T 2heo_A 7 TGDNLEQKILQVLSDDG-GPVAIFQLVKKC--QVPKKTLNQVLYRLKKEDRVSS 57 (67)
T ss_dssp --CHHHHHHHHHHHHHC-SCEEHHHHHHHH--CSCHHHHHHHHHHHHHTTSEEE
T ss_pred cccHHHHHHHHHHHHcC-CCcCHHHHHHHH--CcCHHHHHHHHHHHHHCCcEec
Confidence 46666678999998754 459999999999 9999999999999999999854
No 94
>2hzt_A Putative HTH-type transcriptional regulator YTCD; DNA-binding protein, HTH-type transcription regulators, structural genomics, PSI-2; HET: CSU MSE; 2.00A {Bacillus subtilis} SCOP: a.4.5.69
Probab=96.94 E-value=0.0033 Score=47.21 Aligned_cols=59 Identities=19% Similarity=0.286 Sum_probs=47.5
Q ss_pred HHHHHHHhhCCCcccHHHHHHHhhcCCChHHHHHHHHHHHhCCCceeeecccCCCeeeEEeec
Q 026766 22 LIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVVNIHSKGKKHLMAVE 84 (233)
Q Consensus 22 lVy~~I~~aG~~GIw~~dik~~t~~~l~~~~v~k~LK~Le~k~lIK~vksV~~~~rK~Yml~~ 84 (233)
.|+..+. +.++...+|.+.+ .++++.+|++.|+.||++|||.+...-..+.+..|-|.+
T Consensus 18 ~IL~~L~---~~~~~~~eLa~~l-~~is~~tls~~L~~Le~~GlI~r~~~~~d~r~~~y~LT~ 76 (107)
T 2hzt_A 18 VILXHLT---HGKKRTSELKRLM-PNITQKMLTQQLRELEADGVINRIVYNQVPPKVEYELSE 76 (107)
T ss_dssp HHHHHHT---TCCBCHHHHHHHC-TTSCHHHHHHHHHHHHHTTSEEEEEECSSSCEEEEEECT
T ss_pred HHHHHHH---hCCCCHHHHHHHh-cCCCHHHHHHHHHHHHHCCCEEEeecCCCCCeEEEEECc
Confidence 4555553 3459999999884 289999999999999999999998887777777776654
No 95
>2wte_A CSA3; antiviral protein, viral resistance, winged helix-turn-helix prnai nucleotide-binding domain; HET: MSE; 1.80A {Sulfolobus solfataricus}
Probab=96.94 E-value=0.0024 Score=55.58 Aligned_cols=51 Identities=12% Similarity=0.279 Sum_probs=47.2
Q ss_pred CCChHHHHHHHHHHhhCCCcccHHHHHHHhhcCCChHHHHHHHHHHHhCCCceee
Q 026766 15 SLTDHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEV 69 (233)
Q Consensus 15 ~L~~~e~lVy~~I~~aG~~GIw~~dik~~t~~~l~~~~v~k~LK~Le~k~lIK~v 69 (233)
+|++.+..|+..|.+.| |+..++|.+++ +++.++++|.|+.|+++|+|...
T Consensus 149 ~L~~~~~~IL~~L~~~~--~~s~~eLA~~l--glsksTv~r~L~~Le~~GlV~r~ 199 (244)
T 2wte_A 149 DYSREEMKLLNVLYETK--GTGITELAKML--DKSEKTLINKIAELKKFGILTQK 199 (244)
T ss_dssp CCCHHHHHHHHHHHHHT--CBCHHHHHHHH--TCCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCCHHHHHHHHHHHHcC--CCCHHHHHHHH--CcCHHHHHHHHHHHHHCCCEEEe
Confidence 78999999999997665 69999999999 99999999999999999999886
No 96
>1z7u_A Hypothetical protein EF0647; winged-helix-turn-helix, MARR, structural genomics, PSI, Pro structure initiative; 2.20A {Enterococcus faecalis} SCOP: a.4.5.69
Probab=96.90 E-value=0.0034 Score=47.54 Aligned_cols=61 Identities=8% Similarity=0.135 Sum_probs=50.1
Q ss_pred HHHHHHHHHhhCCCcccHHHHHHHhhcCCChHHHHHHHHHHHhCCCceeeecccCCCeeeEEeec
Q 026766 20 ERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVVNIHSKGKKHLMAVE 84 (233)
Q Consensus 20 e~lVy~~I~~aG~~GIw~~dik~~t~~~l~~~~v~k~LK~Le~k~lIK~vksV~~~~rK~Yml~~ 84 (233)
...|+..|.. | ++...+|.+.+ +++++.+|++.|+.||++|||.+..+-..++++.|-|.+
T Consensus 24 ~~~IL~~L~~-~--~~~~~eLa~~l-~~is~~tvs~~L~~Le~~GlI~r~~~~~d~r~~~~~LT~ 84 (112)
T 1z7u_A 24 KLSLMDELFQ-G--TKRNGELMRAL-DGITQRVLTDRLREMEKDGLVHRESFNELPPRVEYTLTP 84 (112)
T ss_dssp HHHHHHHHHH-S--CBCHHHHHHHS-TTCCHHHHHHHHHHHHHHTSEEEEEECCSSCEEEEEECH
T ss_pred HHHHHHHHHh-C--CCCHHHHHHHh-ccCCHHHHHHHHHHHHHCCCEEEeecCCCCCeEEEEECH
Confidence 4467777763 4 59999999886 379999999999999999999999888877777776654
No 97
>3jth_A Transcription activator HLYU; transcription factor, RTXA, DNA-binding, transcription regulation; 2.00A {Vibrio vulnificus}
Probab=96.89 E-value=0.0029 Score=46.28 Aligned_cols=47 Identities=11% Similarity=0.199 Sum_probs=39.8
Q ss_pred HHHHHHHHHHhhCCCcccHHHHHHHhhcCCChHHHHHHHHHHHhCCCceeee
Q 026766 19 HERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVV 70 (233)
Q Consensus 19 ~e~lVy~~I~~aG~~GIw~~dik~~t~~~l~~~~v~k~LK~Le~k~lIK~vk 70 (233)
....|+.++.+ .++...+|.+.+ ++++++|++.|+.|++.|||...+
T Consensus 24 ~r~~Il~~L~~---~~~~~~ela~~l--~is~~tvs~~L~~L~~~Glv~~~~ 70 (98)
T 3jth_A 24 RRLQILCMLHN---QELSVGELCAKL--QLSQSALSQHLAWLRRDGLVTTRK 70 (98)
T ss_dssp HHHHHHHHTTT---SCEEHHHHHHHH--TCCHHHHHHHHHHHHHTTSEEEEC
T ss_pred HHHHHHHHHhc---CCCCHHHHHHHH--CcCHHHHHHHHHHHHHCCCeEEEE
Confidence 34456666654 469999999999 999999999999999999998753
No 98
>3i4p_A Transcriptional regulator, ASNC family; PSI, structural genom protein structure initiative, midwest center for structural genomics; 2.30A {Agrobacterium tumefaciens str}
Probab=96.89 E-value=0.0033 Score=50.67 Aligned_cols=56 Identities=13% Similarity=0.321 Sum_probs=50.0
Q ss_pred CChHHHHHHHHHHhhCCCcccHHHHHHHhhcCCChHHHHHHHHHHHhCCCceeeecccCC
Q 026766 16 LTDHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVVNIHSK 75 (233)
Q Consensus 16 L~~~e~lVy~~I~~aG~~GIw~~dik~~t~~~l~~~~v~k~LK~Le~k~lIK~vksV~~~ 75 (233)
|++-++.|+.++.+.|. +..++|.+++ |++..++.+.|+.|++.|+|+.+..+-++
T Consensus 1 lD~~d~~il~~L~~~~~--~s~~~la~~l--g~s~~tv~~rl~~L~~~g~i~~~~a~~~~ 56 (162)
T 3i4p_A 1 MDRLDRKILRILQEDST--LAVADLAKKV--GLSTTPCWRRIQKMEEDGVIRRRVALLDP 56 (162)
T ss_dssp CCHHHHHHHHHHTTCSC--SCHHHHHHHH--TCCHHHHHHHHHHHHHTTSSCCCCCCCCT
T ss_pred CCHHHHHHHHHHHHCCC--CCHHHHHHHH--CcCHHHHHHHHHHHHHCCCeeeceeeeCH
Confidence 57788899999998877 8999999999 99999999999999999999987665444
No 99
>3k2z_A LEXA repressor; winged helix-turn-helix, SOS system, autoca cleavage, DNA damage, DNA repair, DNA replication, DNA-BIND hydrolase; 1.37A {Thermotoga maritima}
Probab=96.89 E-value=0.0019 Score=53.58 Aligned_cols=53 Identities=17% Similarity=0.224 Sum_probs=47.2
Q ss_pred CCChHHHHHHHHHHhh---CCCcccHHHHHHHhhcCCChHHHHHHHHHHHhCCCceee
Q 026766 15 SLTDHERLIYDVIRSK---QDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEV 69 (233)
Q Consensus 15 ~L~~~e~lVy~~I~~a---G~~GIw~~dik~~t~~~l~~~~v~k~LK~Le~k~lIK~v 69 (233)
+||+-|+.||.+|.+. .......++|.+.+ +|++.++.+.|+.||++|+|..-
T Consensus 2 ~lt~~q~~il~~I~~~~~~~g~~~s~~eia~~l--gl~~~tv~~~l~~Le~~G~i~~~ 57 (196)
T 3k2z_A 2 DLTERQRKVLLFIEEFIEKNGYPPSVREIARRF--RITPRGALLHLIALEKKGYIERK 57 (196)
T ss_dssp CCCHHHHHHHHHHHHHHHHHSSCCCHHHHHHHH--TSCHHHHHHHHHHHHHTTSEECC
T ss_pred CcCHHHHHHHHHHHHHHHHhCCCCCHHHHHHHc--CCCcHHHHHHHHHHHHCCCEEec
Confidence 6899999999999764 33468999999999 99999999999999999999765
No 100
>2lnb_A Z-DNA-binding protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, immune system; NMR {Homo sapiens}
Probab=96.88 E-value=0.0017 Score=47.77 Aligned_cols=62 Identities=10% Similarity=0.135 Sum_probs=52.5
Q ss_pred ChHHHHHHHHHHhhCCCcccHHHHHHHhhcCCChHHHHHHHHHHHhCCCceeeecccCCCeeeEEeecccc
Q 026766 17 TDHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVVNIHSKGKKHLMAVEFEP 87 (233)
Q Consensus 17 ~~~e~lVy~~I~~aG~~GIw~~dik~~t~~~l~~~~v~k~LK~Le~k~lIK~vksV~~~~rK~Yml~~leP 87 (233)
++.+..|++.+.+||. =+-..+|.+++ +++...|+|+|+.|.+.+.|-+ |.|=.|-+.+-.|
T Consensus 18 ~d~eekVLe~LkeaG~-PlkageIae~~--GvdKKeVdKaik~LKkEgkI~S------PkRCyw~~~~~~~ 79 (80)
T 2lnb_A 18 GHLEQRILQVLTEAGS-PVKLAQLVKEC--QAPKRELNQVLYRMKKELKVSL------TSPATWCLGGTDP 79 (80)
T ss_dssp HHHHHHHHHHHHHHTS-CEEHHHHHHHH--TSCHHHHHHHHHHHHHTTSEEE------EETTEEEESSSSC
T ss_pred chHHHHHHHHHHHcCC-CCCHHHHHHHH--CCCHHHHHHHHHHHHHcCCccC------CCCceeeCCCCCC
Confidence 4458899999999987 79999999999 9999999999999999999866 5666776654333
No 101
>1r1u_A CZRA, repressor protein; zinc, DNA binding, transcriptional regulation, winged HTH protein, transcription repressor; 2.00A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 1r1v_A 2kjb_A 2kjc_A
Probab=96.86 E-value=0.0041 Score=46.49 Aligned_cols=47 Identities=19% Similarity=0.258 Sum_probs=40.7
Q ss_pred HHHHHHHHHHhhCCCcccHHHHHHHhhcCCChHHHHHHHHHHHhCCCceeee
Q 026766 19 HERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVV 70 (233)
Q Consensus 19 ~e~lVy~~I~~aG~~GIw~~dik~~t~~~l~~~~v~k~LK~Le~k~lIK~vk 70 (233)
....|+.+|. . .++...+|.+.+ ++++++|++.|+.|++.|+|...+
T Consensus 27 ~r~~IL~~L~-~--~~~~~~ela~~l--~is~stvs~~L~~L~~~Glv~~~~ 73 (106)
T 1r1u_A 27 NRIRIMELLS-V--SEASVGHISHQL--NLSQSNVSHQLKLLKSVHLVKAKR 73 (106)
T ss_dssp HHHHHHHHHH-H--CCBCHHHHHHHH--TCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHH-h--CCCCHHHHHHHH--CcCHHHHHHHHHHHHHCCCeEEEE
Confidence 4556777776 3 458999999999 999999999999999999998876
No 102
>2e1c_A Putative HTH-type transcriptional regulator PH151; DNA-binding, transcriptional regulatory protein, archaeal; HET: DNA; 2.10A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2 PDB: 1ri7_A* 2zny_A* 2znz_A*
Probab=96.86 E-value=0.0037 Score=51.17 Aligned_cols=57 Identities=16% Similarity=0.345 Sum_probs=50.9
Q ss_pred CCChHHHHHHHHHHhhCCCcccHHHHHHHhhcCCChHHHHHHHHHHHhCCCceeeecccCC
Q 026766 15 SLTDHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVVNIHSK 75 (233)
Q Consensus 15 ~L~~~e~lVy~~I~~aG~~GIw~~dik~~t~~~l~~~~v~k~LK~Le~k~lIK~vksV~~~ 75 (233)
.|++.++.|+.++...|. +..++|.+++ |++..++.+.|+.|+++|+|+.+..+-++
T Consensus 24 ~ld~~d~~IL~~L~~~~~--~s~~eLA~~l--glS~~tv~~rl~~L~~~G~I~~~~a~vd~ 80 (171)
T 2e1c_A 24 PLDEIDKKIIKILQNDGK--APLREISKIT--GLAESTIHERIRKLRESGVIKKFTAIIDP 80 (171)
T ss_dssp CCCHHHHHHHHHHHHCTT--CCHHHHHHHH--TSCHHHHHHHHHHHHHTTSSCCCCCCCCG
T ss_pred CCCHHHHHHHHHHHHcCC--CCHHHHHHHH--CcCHHHHHHHHHHHHHCCCeEeeeEEECH
Confidence 689999999999998775 9999999999 99999999999999999999987655443
No 103
>1i1g_A Transcriptional regulator LRPA; helix-turn-helix, LRP/ASNC family; 2.90A {Pyrococcus furiosus} SCOP: a.4.5.32 d.58.4.2
Probab=96.85 E-value=0.0016 Score=50.62 Aligned_cols=58 Identities=16% Similarity=0.365 Sum_probs=49.0
Q ss_pred CChHHHHHHHHHHhhCCCcccHHHHHHHhhcCCChHHHHHHHHHHHhCCCceeeecccCCCe
Q 026766 16 LTDHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVVNIHSKGK 77 (233)
Q Consensus 16 L~~~e~lVy~~I~~aG~~GIw~~dik~~t~~~l~~~~v~k~LK~Le~k~lIK~vksV~~~~r 77 (233)
|++.+..|+..+...|. +..++|.+++ +++.+++++.|+.|++.|+|+.....-++.+
T Consensus 2 ld~~~~~il~~L~~~~~--~~~~ela~~l--g~s~~tv~~~l~~L~~~G~i~~~~~~~~~~~ 59 (141)
T 1i1g_A 2 IDERDKIILEILEKDAR--TPFTEIAKKL--GISETAVRKRVKALEEKGIIEGYTIKINPKK 59 (141)
T ss_dssp CCSHHHHHHHHHHHCTT--CCHHHHHHHH--TSCHHHHHHHHHHHHHHTSSCCCCCCCCSGG
T ss_pred CCHHHHHHHHHHHHcCC--CCHHHHHHHH--CcCHHHHHHHHHHHHHCCCEeccccccChHH
Confidence 67778889999887654 8999999999 9999999999999999999987765444443
No 104
>1yyv_A Putative transcriptional regulator; reductive methylation, D lysine, structural genomics, PSI; HET: MLY; 2.35A {Salmonella typhimurium} SCOP: a.4.5.69
Probab=96.76 E-value=0.0031 Score=49.56 Aligned_cols=50 Identities=12% Similarity=0.230 Sum_probs=43.7
Q ss_pred CCcccHHHHHHHhhcC-CChHHHHHHHHHHHhCCCceeeecccCCCeeeEEee
Q 026766 32 DMGIWTRDMKRELRVN-LPDNIVTKSIKSLQNKSLIKEVVNIHSKGKKHLMAV 83 (233)
Q Consensus 32 ~~GIw~~dik~~t~~~-l~~~~v~k~LK~Le~k~lIK~vksV~~~~rK~Yml~ 83 (233)
+.++...+|.+.+ . +++.+|++.|+.||++|||.+...-..+.++.|-|.
T Consensus 46 ~g~~~~~eLa~~l--~gis~~tls~~L~~Le~~GlV~r~~~~~d~r~~~y~LT 96 (131)
T 1yyv_A 46 DGTHRFSDLRRXM--GGVSEXMLAQSLQALEQDGFLNRVSYPVVPPHVEYSLT 96 (131)
T ss_dssp GCCEEHHHHHHHS--TTCCHHHHHHHHHHHHHHTCEEEEEECSSSCEEEEEEC
T ss_pred cCCCCHHHHHHHh--ccCCHHHHHHHHHHHHHCCcEEEEecCCCCCeEEEEEC
Confidence 4469999999998 7 999999999999999999999888777777777665
No 105
>3pqk_A Biofilm growth-associated repressor; helix-turn-helix motif, winged-helix fold, transcriptional R DNA binding, transcription; 2.09A {Xylella fastidiosa} PDB: 3pqj_A
Probab=96.72 E-value=0.0065 Score=44.80 Aligned_cols=47 Identities=2% Similarity=0.163 Sum_probs=39.7
Q ss_pred HHHHHHHHHHhhCCCcccHHHHHHHhhcCCChHHHHHHHHHHHhCCCceeee
Q 026766 19 HERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVV 70 (233)
Q Consensus 19 ~e~lVy~~I~~aG~~GIw~~dik~~t~~~l~~~~v~k~LK~Le~k~lIK~vk 70 (233)
--..|+.++.. | .+...+|...+ ++++.+|++.|+.|++.|||...+
T Consensus 24 ~r~~Il~~L~~-~--~~~~~ela~~l--~is~~tvs~~L~~L~~~Glv~~~~ 70 (102)
T 3pqk_A 24 VRLMLVCTLVE-G--EFSVGELEQQI--GIGQPTLSQQLGVLRESGIVETRR 70 (102)
T ss_dssp HHHHHHHHHHT-C--CBCHHHHHHHH--TCCTTHHHHHHHHHHHTTSEEEEC
T ss_pred HHHHHHHHHHh-C--CCCHHHHHHHH--CcCHHHHHHHHHHHHHCCCeEEEE
Confidence 34557777743 4 38999999999 999999999999999999998755
No 106
>2lkp_A Transcriptional regulator, ARSR family; symmetric homodimer, NI(II) binding protein, DNA binding Pro transcription regulator; NMR {Mycobacterium tuberculosis}
Probab=96.66 E-value=0.0075 Score=45.51 Aligned_cols=49 Identities=16% Similarity=0.274 Sum_probs=42.1
Q ss_pred ChHHHHHHHHHHhhCCCcccHHHHHHHhhcCCChHHHHHHHHHHHhCCCceeee
Q 026766 17 TDHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVV 70 (233)
Q Consensus 17 ~~~e~lVy~~I~~aG~~GIw~~dik~~t~~~l~~~~v~k~LK~Le~k~lIK~vk 70 (233)
++.+..|+.+|.+ | ++...+|.+.+ ++++.+|++.|+.||+.|+|...+
T Consensus 31 ~~~~~~il~~L~~-~--~~s~~ela~~l--~is~stvsr~l~~Le~~Glv~~~~ 79 (119)
T 2lkp_A 31 TPSRLMILTQLRN-G--PLPVTDLAEAI--GMEQSAVSHQLRVLRNLGLVVGDR 79 (119)
T ss_dssp CHHHHHHHHHHHH-C--CCCHHHHHHHH--SSCHHHHHHHHHHHHHHCSEEEEE
T ss_pred CHHHHHHHHHHHH-C--CCCHHHHHHHH--CcCHHHHHHHHHHHHHCCCEEEEe
Confidence 3456677888876 3 58999999999 999999999999999999998765
No 107
>1u2w_A CADC repressor, cadmium efflux system accessory protein; LEAD, SOFT metal ION resistance, ARSR/SM family, DNA binding protein; 1.90A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 3f72_A
Probab=96.64 E-value=0.0061 Score=46.86 Aligned_cols=47 Identities=9% Similarity=0.107 Sum_probs=39.6
Q ss_pred HHHHHHHHHhhCCCcccHHHHHHHhhcCCChHHHHHHHHHHHhCCCceeee
Q 026766 20 ERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVV 70 (233)
Q Consensus 20 e~lVy~~I~~aG~~GIw~~dik~~t~~~l~~~~v~k~LK~Le~k~lIK~vk 70 (233)
...|+.++...| ++...+|...+ ++++.+|++.|+.|++.|+|...+
T Consensus 44 rl~IL~~L~~~~--~~s~~eLa~~l--~is~stvs~~L~~L~~~Glv~~~~ 90 (122)
T 1u2w_A 44 RAKITYALCQDE--ELCVCDIANIL--GVTIANASHHLRTLYKQGVVNFRK 90 (122)
T ss_dssp HHHHHHHHHHSS--CEEHHHHHHHH--TCCHHHHHHHHHHHHHTTSEEEC-
T ss_pred HHHHHHHHHHCC--CcCHHHHHHHH--CcCHHHHHHHHHHHHHCCCeEEEE
Confidence 445777776544 58999999999 999999999999999999998753
No 108
>1y0u_A Arsenical resistance operon repressor, putative; structural genomics, protein structure initiative, PSI; HET: MSE; 1.60A {Archaeoglobus fulgidus} SCOP: a.4.5.5
Probab=96.56 E-value=0.008 Score=43.98 Aligned_cols=47 Identities=19% Similarity=0.255 Sum_probs=40.2
Q ss_pred hHHHHHHHHHHhhCCCcccHHHHHHHhhcCCChHHHHHHHHHHHhCCCceeee
Q 026766 18 DHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVV 70 (233)
Q Consensus 18 ~~e~lVy~~I~~aG~~GIw~~dik~~t~~~l~~~~v~k~LK~Le~k~lIK~vk 70 (233)
+....|+.+| .| ++...+|.+.+ ++++.+|++.|+.|++.|+|...+
T Consensus 31 ~~r~~Il~~L--~~--~~~~~eLa~~l--~is~~tv~~~L~~L~~~Glv~~~~ 77 (96)
T 1y0u_A 31 PVRRKILRML--DK--GRSEEEIMQTL--SLSKKQLDYHLKVLEAGFCIERVG 77 (96)
T ss_dssp HHHHHHHHHH--HT--TCCHHHHHHHH--TCCHHHHHHHHHHHHHTTSEEEET
T ss_pred HHHHHHHHHH--cC--CCCHHHHHHHH--CcCHHHHHHHHHHHHHCCCEEEEC
Confidence 3455677777 33 49999999999 999999999999999999998765
No 109
>2kko_A Possible transcriptional regulatory protein (possibly ARSR-family); NESG, DNA-binding, transcription regulation, WHTH, homodimer; NMR {Mycobacterium bovis} PDB: 3gw2_A
Probab=96.55 E-value=0.0063 Score=45.80 Aligned_cols=46 Identities=9% Similarity=0.115 Sum_probs=39.3
Q ss_pred HHHHHHHHHhhCCCcccHHHHHHHhhcCCChHHHHHHHHHHHhCCCceeee
Q 026766 20 ERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVV 70 (233)
Q Consensus 20 e~lVy~~I~~aG~~GIw~~dik~~t~~~l~~~~v~k~LK~Le~k~lIK~vk 70 (233)
...|+.+|.. .++..++|.+.+ ++++++|++.|+.|++.|||...+
T Consensus 27 r~~IL~~L~~---~~~s~~eLa~~l--gis~stvs~~L~~L~~~GlV~~~~ 72 (108)
T 2kko_A 27 RLQILDLLAQ---GERAVEAIATAT--GMNLTTASANLQALKSGGLVEARR 72 (108)
T ss_dssp THHHHHHHTT---CCEEHHHHHHHH--TCCHHHHHHHHHHHHHHTSEEEEE
T ss_pred HHHHHHHHHc---CCcCHHHHHHHH--CcCHHHHHHHHHHHHHCCCeEEEE
Confidence 3456666653 468999999999 999999999999999999998765
No 110
>1xma_A Predicted transcriptional regulator; southea collaboratory for structural genomics, secsg, protein struc initiative, PSI; 2.30A {Clostridium thermocellum} SCOP: a.4.5.61
Probab=96.54 E-value=0.0049 Score=49.45 Aligned_cols=63 Identities=11% Similarity=0.238 Sum_probs=47.7
Q ss_pred HHHHHHHHHHhhCCCcccHHHHHHHhh------cCCChHHHHHHHHHHHhCCCceeeecc--cCCCeeeEEeec
Q 026766 19 HERLIYDVIRSKQDMGIWTRDMKRELR------VNLPDNIVTKSIKSLQNKSLIKEVVNI--HSKGKKHLMAVE 84 (233)
Q Consensus 19 ~e~lVy~~I~~aG~~GIw~~dik~~t~------~~l~~~~v~k~LK~Le~k~lIK~vksV--~~~~rK~Yml~~ 84 (233)
-+..|+.+|.+ |. +.-.+|.+.++ .++...+|+.+|+.||++|||.+.... ..+.|++|-|.+
T Consensus 42 ~~~~IL~~L~~-~~--~~gyeI~~~l~~~~~~~~~is~gtLy~~L~rLE~~GlI~~~~~~~~~~~~rk~Y~LT~ 112 (145)
T 1xma_A 42 VDTIILSLLIE-GD--SYGYEISKNIRIKTDELYVIKETTLYSAFARLEKNGYIKSYYGEETQGKRRTYYRITP 112 (145)
T ss_dssp HHHHHHHHHHH-CC--EEHHHHHHHHHHHHTTSCCCCHHHHHHHHHHHHHTTSEEEEEEEEC--CEEEEEEECH
T ss_pred HHHHHHHHHHh-CC--CCHHHHHHHHHHhhCCccCcChhHHHHHHHHHHHCCCEEEEEeccCCCCCeEEEEECH
Confidence 57788888864 33 77777777762 159999999999999999999988764 456788885554
No 111
>2qlz_A Transcription factor PF0095; 2.50A {Pyrococcus furiosus} PDB: 2quf_A
Probab=96.54 E-value=0.004 Score=53.94 Aligned_cols=47 Identities=9% Similarity=0.216 Sum_probs=40.4
Q ss_pred hHHHHHHHHHHhhCCCcccHHHHHHHhhcCCChHHHHHHHHHHHhCCCceee
Q 026766 18 DHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEV 69 (233)
Q Consensus 18 ~~e~lVy~~I~~aG~~GIw~~dik~~t~~~l~~~~v~k~LK~Le~k~lIK~v 69 (233)
+....|+.+|.. | .+...+|...+ ++++.+|++.|+.|++.|||...
T Consensus 12 ~~R~~IL~~L~~-g--~~s~~ELa~~l--glS~stVs~hL~~Le~aGLV~~~ 58 (232)
T 2qlz_A 12 KVRRDLLSHLTC-M--ECYFSLLSSKV--SVSSTAVAKHLKIMEREGVLQSY 58 (232)
T ss_dssp HHHHHHHHHHTT-T--TTCSSSSCTTC--CCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHHh-C--CCCHHHHHHHH--CcCHHHHHHHHHHHHHCCCEEEe
Confidence 345668888863 4 48889999999 99999999999999999999884
No 112
>2h09_A Transcriptional regulator MNTR; transcription regulator, diphtheria toxin, manganese transport, structural genomics, NPPSFA; 2.10A {Escherichia coli}
Probab=96.49 E-value=0.01 Score=46.58 Aligned_cols=42 Identities=29% Similarity=0.361 Sum_probs=36.2
Q ss_pred HHHHhhCCCcccHHHHHHHhhcCCChHHHHHHHHHHHhCCCceeee
Q 026766 25 DVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVV 70 (233)
Q Consensus 25 ~~I~~aG~~GIw~~dik~~t~~~l~~~~v~k~LK~Le~k~lIK~vk 70 (233)
.+|...| ++..++|...+ ++++.+|+++|+.||++|||...+
T Consensus 47 ~~l~~~~--~~~~~~la~~l--~vs~~tvs~~l~~Le~~Glv~r~~ 88 (155)
T 2h09_A 47 DLIREVG--EARQVDMAARL--GVSQPTVAKMLKRLATMGLIEMIP 88 (155)
T ss_dssp HHHHHHS--CCCHHHHHHHH--TSCHHHHHHHHHHHHHTTCEEEET
T ss_pred HHHHhCC--CcCHHHHHHHh--CcCHHHHHHHHHHHHHCCCEEEec
Confidence 3555554 48999999999 999999999999999999997754
No 113
>2esh_A Conserved hypothetical protein TM0937; APC5794, structural genomics, PSI, protein structure initiative; 2.30A {Thermotoga maritima} SCOP: a.4.5.61
Probab=96.43 E-value=0.006 Score=46.79 Aligned_cols=63 Identities=8% Similarity=0.075 Sum_probs=48.3
Q ss_pred HHHHHHHHHHhhCCCcccHHHHHHHhhc----C--CCh-HHHHHHHHHHHhCCCceeeecc-cCCCeeeEEeec
Q 026766 19 HERLIYDVIRSKQDMGIWTRDMKRELRV----N--LPD-NIVTKSIKSLQNKSLIKEVVNI-HSKGKKHLMAVE 84 (233)
Q Consensus 19 ~e~lVy~~I~~aG~~GIw~~dik~~t~~----~--l~~-~~v~k~LK~Le~k~lIK~vksV-~~~~rK~Yml~~ 84 (233)
-+..|+.+|.. +. +.-.+|.+.+.. . +++ .+|+.+|+.||++|||.+.... ..+.|++|-|.+
T Consensus 14 ~~~~IL~~L~~-~~--~~gyel~~~l~~~g~~~~~is~~~tly~~L~~Le~~GlI~~~~~~~~~~~r~~Y~LT~ 84 (118)
T 2esh_A 14 LASTILLLVAE-KP--SHGYELAERLAEFGIEIPGIGHMGNIYRVLADLEESGFLSTEWDTTVSPPRKIYRITP 84 (118)
T ss_dssp HHHHHHHHHHH-SC--BCHHHHHHHHHTTCCSSTTCCCCCCHHHHHHHHHHTTSEEEEEECSSSSCEEEEEECH
T ss_pred HHHHHHHHHHc-CC--CCHHHHHHHHHHhCCcccCCCCcchHHHHHHHHHHCCCeEEEeecCCCCCceEEEECh
Confidence 56778888865 33 777888888721 2 889 9999999999999999988754 446788886554
No 114
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=96.41 E-value=0.012 Score=41.82 Aligned_cols=59 Identities=10% Similarity=0.133 Sum_probs=49.8
Q ss_pred CCChHHHHHHHHHHhhCCCcccHHHHHHHhh---cCCChHHHHHHHHHHHhCCCceeeeccc
Q 026766 15 SLTDHERLIYDVIRSKQDMGIWTRDMKRELR---VNLPDNIVTKSIKSLQNKSLIKEVVNIH 73 (233)
Q Consensus 15 ~L~~~e~lVy~~I~~aG~~GIw~~dik~~t~---~~l~~~~v~k~LK~Le~k~lIK~vksV~ 73 (233)
.+++....|+.++.+.+...+...+|...++ ++++..+|.|.|+.|+++|+|.++..-.
T Consensus 14 ~~t~~r~~IL~~l~~~~~~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~Glv~~~~~~~ 75 (83)
T 2fu4_A 14 KVTLPRLKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIVTRHNFEG 75 (83)
T ss_dssp CCCHHHHHHHHHHTSGGGSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSEEEEECGG
T ss_pred CcCHHHHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCeEEEeeCC
Confidence 4788889999999876435799999999983 3799999999999999999999876543
No 115
>2pjp_A Selenocysteine-specific elongation factor; SELB, protein-RNA complex, elongation factor, winged- helix, bulge, translation/RNA complex; 2.30A {Escherichia coli}
Probab=96.39 E-value=0.021 Score=43.99 Aligned_cols=109 Identities=11% Similarity=0.193 Sum_probs=82.0
Q ss_pred CChHHHHHHHHHHhh-CCCcccHHHHHHHhhcCCChHHHHHHHHHHHhCCCceeeecccCCCeeeEEeeccccCCCcccC
Q 026766 16 LTDHERLIYDVIRSK-QDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVVNIHSKGKKHLMAVEFEPSKEISGG 94 (233)
Q Consensus 16 L~~~e~lVy~~I~~a-G~~GIw~~dik~~t~~~l~~~~v~k~LK~Le~k~lIK~vksV~~~~rK~Yml~~lePs~eiTGG 94 (233)
+++++..+.+-|..+ +..|.|.+|+...+ +++...+.+.|+.|...|.|.++..
T Consensus 1 ~~~~~~~l~~~i~~~~~~~p~~~~~la~~~--~~~~~~~~~~l~~l~~~G~l~~i~~----------------------- 55 (121)
T 2pjp_A 1 FSEEQQAIWQKAEPLFGDEPWWVRDLAKET--GTDEQAMRLTLRQAAQQGIITAIVK----------------------- 55 (121)
T ss_dssp CCHHHHHHHHHHGGGCSSSCEEHHHHHHHT--TCCHHHHHHHHHHHHHTTSEEEEET-----------------------
T ss_pred CCHHHHHHHHHHHHHHHhCCCCHHHHHHHh--CCCHHHHHHHHHHHHHCCCEEEecC-----------------------
Confidence 355555555555443 34889999999999 9999999999999999999977541
Q ss_pred CcccCCCCCHHHHHHHHHHHHHHhhhCCCCCHHHHHHHHHHhCCcccccCHHHHHHHHHHHhcCCeE
Q 026766 95 AWYSEGSLDTEFIKVVKSQCLKQIIKLKVATLEGISDSIKRSGAFKVDLTKQQIEEIVRALVLDNQI 161 (233)
Q Consensus 95 ~wy~d~e~D~efI~~l~~~~~~~i~~~~~~T~~~I~~~I~~~~i~~~~Ls~~di~~il~~Lv~Dg~i 161 (233)
|.-|..+.++.+.+.+..++..++..|+.+..+.+ | +|-.=.-.||+-|=-.|..
T Consensus 56 ----~~~~~~~~~~~~~~~l~~~~~~~~~it~ae~Rd~l---g-----~sRK~ai~lLE~~Dr~g~T 110 (121)
T 2pjp_A 56 ----DRYYRNDRIVEFANMIRDLDQECGSTCAADFRDRL---G-----VGRKLAIQILEYFDRIGFT 110 (121)
T ss_dssp ----TEEEEHHHHHHHHHHHHHHHHHHSSEEHHHHHHHH---T-----SCHHHHHHHHHHHHHHTSE
T ss_pred ----CceECHHHHHHHHHHHHHHHHHCCCccHHHHHHHH---C-----CcHHHHHHHHHHHhhcCCe
Confidence 22356788999999999999999999999998887 4 4444444566665444443
No 116
>3f6o_A Probable transcriptional regulator, ARSR family protein; transcriptional regulator,RHA00566,MCSG, structural genomics, PSI-2; 1.90A {Rhodococcus SP}
Probab=96.36 E-value=0.0096 Score=45.32 Aligned_cols=56 Identities=9% Similarity=0.101 Sum_probs=44.4
Q ss_pred HHHHHHHHHHhhCCCcccHHHHHHHhhcCCChHHHHHHHHHHHhCCCceeeecccCCCeeeEEe
Q 026766 19 HERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVVNIHSKGKKHLMA 82 (233)
Q Consensus 19 ~e~lVy~~I~~aG~~GIw~~dik~~t~~~l~~~~v~k~LK~Le~k~lIK~vksV~~~~rK~Yml 82 (233)
.-..|+.++. +.++...+|...+ ++++.+|++.|+.|++.|||...+. .+.++|-|
T Consensus 19 ~R~~Il~~L~---~~~~~~~eLa~~l--~is~~tvs~hL~~L~~~GlV~~~~~---gr~~~y~l 74 (118)
T 3f6o_A 19 TRRAVLGRLS---RGPATVSELAKPF--DMALPSFMKHIHFLEDSGWIRTHKQ---GRVRTCAI 74 (118)
T ss_dssp HHHHHHHHHH---TCCEEHHHHHTTC--CSCHHHHHHHHHHHHHTTSEEEEEE---TTEEEEEE
T ss_pred HHHHHHHHHH---hCCCCHHHHHHHh--CcCHHHHHHHHHHHHHCCCeEEEec---CCEEEEEE
Confidence 4456777776 2458999999999 9999999999999999999988665 34455543
No 117
>3df8_A Possible HXLR family transcriptional factor; APC89000, structural genomics, midwest center for structural genomics, MCSG; 1.65A {Thermoplasma volcanium} SCOP: a.4.5.0
Probab=96.36 E-value=0.0074 Score=45.84 Aligned_cols=58 Identities=17% Similarity=0.260 Sum_probs=43.0
Q ss_pred HHHHHHHHhhCCCcccHHHHHHHhhcCCChHHHHHHHHHHHhCCCceeeecccCCCeeeEEeec
Q 026766 21 RLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVVNIHSKGKKHLMAVE 84 (233)
Q Consensus 21 ~lVy~~I~~aG~~GIw~~dik~~t~~~l~~~~v~k~LK~Le~k~lIK~vksV~~~~rK~Yml~~ 84 (233)
..|+..+. .|...+...+|.+.+ +++++++|++.|+.||+.|||.+... .+..|-|.+
T Consensus 30 l~IL~~L~-~g~~~~~~~eL~~~l-~gis~~~ls~~L~~Le~~GlV~r~~~----r~~~y~LT~ 87 (111)
T 3df8_A 30 MLIISVLG-NGSTRQNFNDIRSSI-PGISSTILSRRIKDLIDSGLVERRSG----QITTYALTE 87 (111)
T ss_dssp HHHHHHHT-SSSSCBCHHHHHHTS-TTCCHHHHHHHHHHHHHTTSEEEEES----SSEEEEECH
T ss_pred HHHHHHHh-cCCCCCCHHHHHHHc-cCCCHHHHHHHHHHHHHCCCEEEeec----CcEEEEECc
Confidence 34565664 455434499999988 24999999999999999999998766 455665443
No 118
>1q1h_A TFE, transcription factor E, TFE; TFIIE, transcription initiation, preinitiation complex, RNA polymerase II, transcription bubble; 2.90A {Sulfolobus solfataricus} SCOP: a.4.5.41
Probab=96.36 E-value=0.008 Score=44.90 Aligned_cols=51 Identities=16% Similarity=0.218 Sum_probs=41.9
Q ss_pred hHHHHHHHHHHhhCCCcccHHHHHHHhhcCCChHHHHHHHHHHHhCCCceeeec
Q 026766 18 DHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVVN 71 (233)
Q Consensus 18 ~~e~lVy~~I~~aG~~GIw~~dik~~t~~~l~~~~v~k~LK~Le~k~lIK~vks 71 (233)
+....|+..+...|.. +...+|...+ |++.++|+++|+.|++.|+|...+.
T Consensus 18 ~~~l~Il~~l~~~g~~-~s~~eLa~~l--gvs~~tV~~~L~~L~~~GlV~~~~~ 68 (110)
T 1q1h_A 18 DDVIDVLRILLDKGTE-MTDEEIANQL--NIKVNDVRKKLNLLEEQGFVSYRKT 68 (110)
T ss_dssp STTHHHHHHHHHHCSC-BCHHHHHHTT--TSCHHHHHHHHHHHHHHTSCEEEEE
T ss_pred hHHHHHHHHHHHcCCC-CCHHHHHHHH--CcCHHHHHHHHHHHHHCCCEEEEec
Confidence 3445566666566643 9999999999 9999999999999999999987643
No 119
>2k02_A Ferrous iron transport protein C; FEOC, iron-sulfur, metal-binding, metal binding protein; NMR {Klebsiella pneumoniae subsp}
Probab=96.30 E-value=0.0084 Score=44.69 Aligned_cols=46 Identities=7% Similarity=0.237 Sum_probs=43.0
Q ss_pred HHHHHHHHhhCCCcccHHHHHHHhhcCCChHHHHHHHHHHHhCCCceeee
Q 026766 21 RLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVV 70 (233)
Q Consensus 21 ~lVy~~I~~aG~~GIw~~dik~~t~~~l~~~~v~k~LK~Le~k~lIK~vk 70 (233)
..|+++|.+.|. +..+||.+.+ +++..+|++-|..||++|+|+++.
T Consensus 5 ~~Il~~L~~~g~--vsv~eLA~~l--~VS~~TIRrDL~~Le~~G~l~R~~ 50 (87)
T 2k02_A 5 MEVRDMLALQGR--MEAKQLSARL--QTPQPLIDAMLERMEAMGKVVRIS 50 (87)
T ss_dssp HHHHHHHHHSCS--EEHHHHHHHT--TCCHHHHHHHHHHHHTTCCSEEEE
T ss_pred HHHHHHHHHcCC--CcHHHHHHHH--CcCHHHHHHHHHHHHHCCCEEEEe
Confidence 368889999888 9999999999 999999999999999999999985
No 120
>1xn7_A Hypothetical protein YHGG; alpha+beta, GFT structural genomics, protein structure initiative, PSI, NESG; NMR {Escherichia coli} SCOP: a.4.5.62
Probab=96.30 E-value=0.0082 Score=43.69 Aligned_cols=45 Identities=11% Similarity=0.267 Sum_probs=42.3
Q ss_pred HHHHHHHHhhCCCcccHHHHHHHhhcCCChHHHHHHHHHHHhCCCceee
Q 026766 21 RLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEV 69 (233)
Q Consensus 21 ~lVy~~I~~aG~~GIw~~dik~~t~~~l~~~~v~k~LK~Le~k~lIK~v 69 (233)
..|+++|.+.|. +..+||.+.+ +++..+|++-|..||++|+|+++
T Consensus 5 ~~Il~~L~~~g~--vsv~eLa~~l--~VS~~TIRrdL~~Le~~G~l~R~ 49 (78)
T 1xn7_A 5 IQVRDLLALRGR--MEAAQISQTL--NTPQPMINAMLQQLESMGKAVRI 49 (78)
T ss_dssp HHHHHHHHHSCS--BCHHHHHHHT--TCCHHHHHHHHHHHHHHTSEEEE
T ss_pred HHHHHHHHHcCC--CcHHHHHHHH--CcCHHHHHHHHHHHHHCCCEEEe
Confidence 368889999888 9999999999 99999999999999999999987
No 121
>3l7w_A Putative uncharacterized protein SMU.1704; PADR, transcriptional factor, transcription; HET: MSE; 2.20A {Streptococcus mutans} SCOP: a.4.5.0
Probab=96.28 E-value=0.01 Score=44.84 Aligned_cols=62 Identities=15% Similarity=0.314 Sum_probs=45.1
Q ss_pred HHHHHHHHHHhhCCCcccHHHHHHHhh--cCCChHHHHHHHHHHHhCCCceeeeccc-CCCeeeEEee
Q 026766 19 HERLIYDVIRSKQDMGIWTRDMKRELR--VNLPDNIVTKSIKSLQNKSLIKEVVNIH-SKGKKHLMAV 83 (233)
Q Consensus 19 ~e~lVy~~I~~aG~~GIw~~dik~~t~--~~l~~~~v~k~LK~Le~k~lIK~vksV~-~~~rK~Yml~ 83 (233)
-+..|+.++.. |. ..--+|.+.+. .+++..+|..+|+.||++|||.+..... .+.|++|-|.
T Consensus 10 l~~~IL~~L~~-~~--~~gyel~~~l~~~~~i~~~tly~~L~~Le~~GlI~~~~~~~~~r~r~~y~LT 74 (108)
T 3l7w_A 10 IEYLILAIVSK-HD--SYGYDISQTIKLIASIKESTLYPILKKLEKAGYLSTYTQEHQGRRRKYYHLT 74 (108)
T ss_dssp HHHHHHHHHHH-SC--EEHHHHHHHHTTTCCCCHHHHHHHHHHHHHTTSEEEEEEEETTEEEEEEEEC
T ss_pred HHHHHHHHHHc-CC--CcHHHHHHHHHHHhCCCcChHHHHHHHHHHCCCeEEEeecCCCCcceEEEEC
Confidence 46678888876 33 55566666631 1899999999999999999999887643 3446677544
No 122
>1on2_A Transcriptional regulator MNTR; helix-turn-helix, DNA-binding protein, metalloregulatory protein; 1.61A {Bacillus subtilis} SCOP: a.4.5.24 a.76.1.1 PDB: 2ev0_A 1on1_A 2ev5_A 2ev6_A* 2f5c_A 2f5d_A 2f5e_A 2f5f_A 2hyf_A* 2hyg_D 3r60_A* 3r61_A*
Probab=96.25 E-value=0.0088 Score=46.24 Aligned_cols=36 Identities=17% Similarity=0.123 Sum_probs=33.4
Q ss_pred CcccHHHHHHHhhcCCChHHHHHHHHHHHhCCCceeee
Q 026766 33 MGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVV 70 (233)
Q Consensus 33 ~GIw~~dik~~t~~~l~~~~v~k~LK~Le~k~lIK~vk 70 (233)
.++..++|.+.+ +++..+|+++|+.|+++|||...+
T Consensus 21 ~~~~~~ela~~l--~vs~~tvs~~l~~Le~~Glv~r~~ 56 (142)
T 1on2_A 21 GYARVSDIAEAL--AVHPSSVTKMVQKLDKDEYLIYEK 56 (142)
T ss_dssp SSCCHHHHHHHH--TSCHHHHHHHHHHHHHTTSEEEET
T ss_pred CCCCHHHHHHHh--CCCHHHHHHHHHHHHHCCCEEEee
Confidence 469999999999 999999999999999999998753
No 123
>4a5n_A Uncharacterized HTH-type transcriptional regulato; activator, DNA binding, MARR-like; 1.81A {Bacillus subtilis} PDB: 4a5m_A
Probab=96.24 E-value=0.016 Score=45.89 Aligned_cols=52 Identities=13% Similarity=0.180 Sum_probs=43.5
Q ss_pred CCcccHHHHHHHhhcCCChHHHHHHHHHHHhCCCceeeecccCCCeeeEEeec
Q 026766 32 DMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVVNIHSKGKKHLMAVE 84 (233)
Q Consensus 32 ~~GIw~~dik~~t~~~l~~~~v~k~LK~Le~k~lIK~vksV~~~~rK~Yml~~ 84 (233)
...+...+|.+.+ +++++++|++.|+.||+.|||.+...-..+.+..|-|.+
T Consensus 37 ~g~~rf~eL~~~l-~gIs~~~Ls~~L~~Le~~GLV~R~~~~~d~r~v~y~LT~ 88 (131)
T 4a5n_A 37 DGKKRFNEFRRIC-PSITQRMLTLQLRELEADGIVHREVYHQVPPKVEYSLTE 88 (131)
T ss_dssp TSCBCHHHHHHHC-TTSCHHHHHHHHHHHHHTTSEEEEEECSSSCEEEEEECT
T ss_pred cCCcCHHHHHHHh-cccCHHHHHHHHHHHHHCCCEEEEecCCCCCeEEEEECH
Confidence 3458999999886 379999999999999999999998877777777776654
No 124
>2jsc_A Transcriptional regulator RV1994C/MT2050; cadmium, transcriptional repressor, solution structure, STRU genomics; NMR {Mycobacterium tuberculosis}
Probab=96.23 E-value=0.011 Score=45.07 Aligned_cols=52 Identities=15% Similarity=0.204 Sum_probs=41.9
Q ss_pred CCCCh-HHHHHHHHHHhhCCCcccHHHHHHHhhcCCChHHHHHHHHHHHhCCCceeee
Q 026766 14 DSLTD-HERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVV 70 (233)
Q Consensus 14 ~~L~~-~e~lVy~~I~~aG~~GIw~~dik~~t~~~l~~~~v~k~LK~Le~k~lIK~vk 70 (233)
+.|.+ ....|+.++. .| ++...+|.+.+ ++++.+|++.|+.|++.|||...+
T Consensus 16 ~aL~~~~r~~IL~~L~-~~--~~~~~eLa~~l--gis~stvs~~L~~L~~~GlV~~~~ 68 (118)
T 2jsc_A 16 RALADPTRCRILVALL-DG--VCYPGQLAAHL--GLTRSNVSNHLSCLRGCGLVVATY 68 (118)
T ss_dssp HHHSSHHHHHHHHHHH-TT--CCSTTTHHHHH--SSCHHHHHHHHHHHTTTTSEEEEE
T ss_pred HHhCCHHHHHHHHHHH-cC--CCCHHHHHHHH--CcCHHHHHHHHHHHHHCCceEEEE
Confidence 33433 4556777776 33 47889999999 999999999999999999998765
No 125
>1sfu_A 34L protein; protein/Z-DNA complex, DNA binding protein/DNA complex; 2.00A {Yaba-like disease virus} SCOP: a.4.5.19
Probab=96.23 E-value=0.014 Score=42.47 Aligned_cols=51 Identities=14% Similarity=0.145 Sum_probs=45.3
Q ss_pred HHHHHHHHHHhhCCCc-ccHHHHHHHhhcCCChHHHHHHHHHHHhCCCceeeec
Q 026766 19 HERLIYDVIRSKQDMG-IWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVVN 71 (233)
Q Consensus 19 ~e~lVy~~I~~aG~~G-Iw~~dik~~t~~~l~~~~v~k~LK~Le~k~lIK~vks 71 (233)
...+|.++|..-+..+ +...+|.+++ |++.+.|+|+|=.|+++|+|..+.+
T Consensus 13 ~~~~v~~~i~~L~~~~~~Ta~~IAkkL--g~sK~~vNr~LY~L~kkG~V~~~~~ 64 (75)
T 1sfu_A 13 IFSLVKKEVLSLNTNDYTTAISLSNRL--KINKKKINQQLYKLQKEDTVKMVPS 64 (75)
T ss_dssp HHHHHHHHHHTSCTTCEECHHHHHHHT--TCCHHHHHHHHHHHHHTTSEEEECC
T ss_pred HHHHHHHHHHhCCCCcchHHHHHHHHH--CCCHHHHHHHHHHHHHCCCEecCCC
Confidence 3457777788888887 9999999999 9999999999999999999988765
No 126
>3b73_A PHIH1 repressor-like protein; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 2.12A {Haloarcula marismortui atcc 43049}
Probab=96.16 E-value=0.0098 Score=46.02 Aligned_cols=52 Identities=13% Similarity=0.338 Sum_probs=46.3
Q ss_pred CChHHHHHHHHHHhhCCCcccHHHHHHHhhcCCChHHHHHHHHHHHhCCCceee
Q 026766 16 LTDHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEV 69 (233)
Q Consensus 16 L~~~e~lVy~~I~~aG~~GIw~~dik~~t~~~l~~~~v~k~LK~Le~k~lIK~v 69 (233)
|++-++.|+.++.+.|. +..++|...++.+++...|++.|+.|++.|||...
T Consensus 11 md~~d~~IL~~L~~~g~--~s~~eLA~~l~~giS~~aVs~rL~~Le~~GLV~~~ 62 (111)
T 3b73_A 11 MTIWDDRILEIIHEEGN--GSPKELEDRDEIRISKSSVSRRLKKLADHDLLQPL 62 (111)
T ss_dssp CCHHHHHHHHHHHHHSC--BCHHHHHTSTTCCSCHHHHHHHHHHHHHTTSEEEC
T ss_pred cCHHHHHHHHHHHHcCC--CCHHHHHHHHhcCCCHHHHHHHHHHHHHCCCEEec
Confidence 78888999999998885 99999999884467999999999999999999874
No 127
>1uly_A Hypothetical protein PH1932; helix-turn-helix, structural genomics, DNA binding protein; 2.50A {Pyrococcus horikoshii} SCOP: a.4.5.58 PDB: 2cwe_A
Probab=96.16 E-value=0.01 Score=49.67 Aligned_cols=51 Identities=18% Similarity=0.293 Sum_probs=44.8
Q ss_pred CChHHHHHHHHHHhhCCCcccHHHHHHHhhcCCChHHHHHHHHHHHhCCCceeeec
Q 026766 16 LTDHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVVN 71 (233)
Q Consensus 16 L~~~e~lVy~~I~~aG~~GIw~~dik~~t~~~l~~~~v~k~LK~Le~k~lIK~vks 71 (233)
+++.+..|+.++. .| ++..++|..++ ++++.++++.|+.|++.|+|+...+
T Consensus 18 ~d~~~~~IL~~L~-~~--~~s~~eLA~~l--glS~stv~~~l~~Le~~GlI~~~~~ 68 (192)
T 1uly_A 18 LEDTRRKILKLLR-NK--EMTISQLSEIL--GKTPQTIYHHIEKLKEAGLVEVKRT 68 (192)
T ss_dssp HSHHHHHHHHHHT-TC--CBCHHHHHHHH--TCCHHHHHHHHHHHHHTTSEEEEEE
T ss_pred CCHHHHHHHHHHH-cC--CCCHHHHHHHH--CcCHHHHHHHHHHHHHCCCEEEEec
Confidence 3667778898887 34 59999999999 9999999999999999999999843
No 128
>2p4w_A Transcriptional regulatory protein ARSR family; archaea, PHR, heat shock, transcriptional regulation, winged DNA binding; 2.60A {Pyrococcus furiosus} SCOP: a.4.5.64
Probab=96.10 E-value=0.022 Score=48.01 Aligned_cols=60 Identities=22% Similarity=0.372 Sum_probs=47.3
Q ss_pred hHHHHHHHHHHhhCCCcccHHHHHHHhhcCCChHHHHHHHHHHHhCCCceeeecc--cCCCeeeEEe
Q 026766 18 DHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVVNI--HSKGKKHLMA 82 (233)
Q Consensus 18 ~~e~lVy~~I~~aG~~GIw~~dik~~t~~~l~~~~v~k~LK~Le~k~lIK~vksV--~~~~rK~Yml 82 (233)
+....|+.++. .| ++...+|.+.+ ++++.+|++.|+.|++.|||...+.- ..+.+++|-+
T Consensus 15 ~~rl~IL~~L~-~~--~~s~~eLa~~l--~is~stvs~hLk~Le~~GLV~~~~~~~~~g~~~~~Y~L 76 (202)
T 2p4w_A 15 ETRRRILFLLT-KR--PYFVSELSREL--GVGQKAVLEHLRILEEAGLIESRVEKIPRGRPRKYYMI 76 (202)
T ss_dssp HHHHHHHHHHH-HS--CEEHHHHHHHH--TCCHHHHHHHHHHHHHTTSEEEEECCBTTBCCCEEEEE
T ss_pred HHHHHHHHHHH-hC--CCCHHHHHHHH--CcCHHHHHHHHHHHHHCCceEEEeeccCCCCceEEEEE
Confidence 45667888884 33 59999999999 99999999999999999999987653 2245555544
No 129
>1r7j_A Conserved hypothetical protein SSO10A; winged helix-turn-helix, two-stranded antiparallel coiled CO structural genomics, PSI; 1.47A {Sulfolobus solfataricus} SCOP: a.4.5.49 PDB: 1xsx_A
Probab=96.04 E-value=0.015 Score=43.37 Aligned_cols=46 Identities=17% Similarity=0.252 Sum_probs=41.5
Q ss_pred HHHHHHHHhhCCCcccHHHHHHHhhcCCChHHHHHHHHHHHhCCCceee
Q 026766 21 RLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEV 69 (233)
Q Consensus 21 ~lVy~~I~~aG~~GIw~~dik~~t~~~l~~~~v~k~LK~Le~k~lIK~v 69 (233)
..||.+++.-.+ |+..++|...+ ||+.+.+++.|..|+++|||...
T Consensus 8 eIi~~IL~~i~~-~~~~t~La~~~--~ls~~~~~~~l~~L~~~GLI~~~ 53 (95)
T 1r7j_A 8 EIIQAILEACKS-GSPKTRIMYGA--NLSYALTGRYIKMLMDLEIIRQE 53 (95)
T ss_dssp HHHHHHHHHHTT-CBCHHHHHHHH--TCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHHc-CCCHHHHHHHh--CcCHHHHHHHHHHHHHCCCeEEE
Confidence 378888887764 49999999999 99999999999999999999875
No 130
>1r1t_A Transcriptional repressor SMTB; zinc, transcriptional regulation, winged HTH protein, DNA binding, transcription repressor; 1.70A {Synechococcus elongatus pcc 7942} SCOP: a.4.5.5 PDB: 1r23_A 1smt_A 1r22_A
Probab=96.02 E-value=0.025 Score=43.64 Aligned_cols=44 Identities=14% Similarity=0.315 Sum_probs=37.2
Q ss_pred HHHHHHHhhCCCcccHHHHHHHhhcCCChHHHHHHHHHHHhCCCceeee
Q 026766 22 LIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVV 70 (233)
Q Consensus 22 lVy~~I~~aG~~GIw~~dik~~t~~~l~~~~v~k~LK~Le~k~lIK~vk 70 (233)
.|+.++. +.++...+|.+.+ ++++.+|++.|+.|++.|+|...+
T Consensus 50 ~IL~~L~---~~~~s~~ela~~l--gis~stvs~~L~~Le~~Glv~~~~ 93 (122)
T 1r1t_A 50 RLLSLLA---RSELCVGDLAQAI--GVSESAVSHQLRSLRNLRLVSYRK 93 (122)
T ss_dssp HHHHHHT---TCCBCHHHHHHHH--TCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHH---cCCCCHHHHHHHH--CcCHHHHHHHHHHHHHCCCeEEEE
Confidence 3555553 3468999999999 999999999999999999998765
No 131
>1oyi_A Double-stranded RNA-binding protein; (alpha+beta) helix-turn-helix, viral protein; NMR {Vaccinia virus} SCOP: a.4.5.19
Probab=95.99 E-value=0.0067 Score=44.88 Aligned_cols=45 Identities=20% Similarity=0.243 Sum_probs=38.3
Q ss_pred HHHHHHHHHhhCCCcccHHHHHHHhhcCCChHHHHHHHHHHHhCCCceee
Q 026766 20 ERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEV 69 (233)
Q Consensus 20 e~lVy~~I~~aG~~GIw~~dik~~t~~~l~~~~v~k~LK~Le~k~lIK~v 69 (233)
-+.|+.++.. .|+..++|.+++ +++...|++.|+.||+.|+|...
T Consensus 19 ~~~IL~lL~~---~g~sa~eLAk~L--giSk~aVr~~L~~Le~eG~I~~~ 63 (82)
T 1oyi_A 19 VCEAIKTIGI---EGATAAQLTRQL--NMEKREVNKALYDLQRSAMVYSS 63 (82)
T ss_dssp HHHHHHHHSS---STEEHHHHHHHS--SSCHHHHHHHHHHHHHHTSSEEC
T ss_pred HHHHHHHHHH---cCCCHHHHHHHH--CcCHHHHHHHHHHHHHCCCEEeC
Confidence 3455566664 459999999999 99999999999999999999874
No 132
>2co5_A Viral protein F93; viral protein-winged helix complex, winged helix, DNA-bindin WHTH, disulfide bond, STIV; 2.2A {Sulfolobus turreted icosahedral virus} SCOP: a.4.5.48
Probab=95.96 E-value=0.024 Score=42.84 Aligned_cols=68 Identities=15% Similarity=0.236 Sum_probs=50.0
Q ss_pred CCCChHHHHHHHHHHhhCC--Cc-ccHHHHHHHhhcCCChHHHHHHHHHHHhCCCceeeecccCCCeeeEEeec
Q 026766 14 DSLTDHERLIYDVIRSKQD--MG-IWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVVNIHSKGKKHLMAVE 84 (233)
Q Consensus 14 ~~L~~~e~lVy~~I~~aG~--~G-Iw~~dik~~t~~~l~~~~v~k~LK~Le~k~lIK~vksV~~~~rK~Yml~~ 84 (233)
+-|+.....|+.++...+. .| =..++|.++.+.++...+|..+|+.||++|+|.+.. .+.||+|-+.+
T Consensus 5 ~~~~~~~~~IL~lL~~~~~~~~g~~i~~ei~~~~~~~is~GtlYp~L~rLe~~GlI~~~~---~~~rk~Y~iT~ 75 (99)
T 2co5_A 5 KYMRINYYIILKVLVINGSRLEKKRLRSEILKRFDIDISDGVLYPLIDSLIDDKILREEE---APDGKVLFLTE 75 (99)
T ss_dssp CCCHHHHHHHHHHHHHTTTEEEGGGHHHHHHHHHCCBCCHHHHHHHHHHHHHTTSEEEEC---CTTSCEEEECH
T ss_pred HhhcccHHHHHHHHHhcCCCCcHHHHHHHHHHHhCCCCCCCcHHHHHHHHHHCCCEEEee---CCCcEEEEECH
Confidence 3466678889998865421 22 233566666633699999999999999999999876 67899996654
No 133
>3hrs_A Metalloregulator SCAR; DTXR/MNTR family member, transcription; 2.70A {Streptococcus gordonii} PDB: 3hrt_A 3hru_A
Probab=95.96 E-value=0.054 Score=45.57 Aligned_cols=109 Identities=13% Similarity=0.124 Sum_probs=72.4
Q ss_pred HHHHHHHHhhCCCcccHHHHHHHhhcCCChHHHHHHHHHHHhCCCceeeecccCCCeeeEEeeccccCCCcccCCcccC-
Q 026766 21 RLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVVNIHSKGKKHLMAVEFEPSKEISGGAWYSE- 99 (233)
Q Consensus 21 ~lVy~~I~~aG~~GIw~~dik~~t~~~l~~~~v~k~LK~Le~k~lIK~vksV~~~~rK~Yml~~lePs~eiTGG~wy~d- 99 (233)
+.||.+.+ .+.++.+++|.+.+ ++++.+|+++|++||++|||...++ ++..-|+
T Consensus 9 ~~I~~l~~--~~~~~~~~~lA~~l--~vs~~tvs~~l~~Le~~GlV~r~~~---------------------~~i~LT~~ 63 (214)
T 3hrs_A 9 KCLYELGT--RHNKITNKEIAQLM--QVSPPAVTEMMKKLLAEELLIKDKK---------------------AGYLLTDL 63 (214)
T ss_dssp HHHHHTTS--SCSCCCHHHHHHHH--TCCHHHHHHHHHHHHHTTSEEEETT---------------------TEEEECHH
T ss_pred HHHHHHHh--cCCCcCHHHHHHHH--CCChhHHHHHHHHHHHCCCEEEecC---------------------CCeEECHH
Confidence 45565544 35579999999999 9999999999999999999987653 1222232
Q ss_pred CCCCHHHHHHHHHHHHHHhhhCCCCCHHHHHHHHHHhCCcccccCHHHHHHHHHHHhc
Q 026766 100 GSLDTEFIKVVKSQCLKQIIKLKVATLEGISDSIKRSGAFKVDLTKQQIEEIVRALVL 157 (233)
Q Consensus 100 ~e~D~efI~~l~~~~~~~i~~~~~~T~~~I~~~I~~~~i~~~~Ls~~di~~il~~Lv~ 157 (233)
|.=-.+.+-...+....|+...-..+.+++++.-.... -.+|++-++.|-..|-+
T Consensus 64 G~~~~~~~~~~h~~~e~~l~~~lg~~~~e~~~~a~~lE---h~~s~~~~~~l~~~l~~ 118 (214)
T 3hrs_A 64 GLKLVSDLYRKHRLIEVFLVHHLGYTTEEIHEEAEVLE---HTVSDHFVERLDQLLDY 118 (214)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHH---TTSCHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHh---ccCCHHHHHHHHHHhCC
Confidence 22112222233346667776544566777777666444 24788888888777654
No 134
>1z6r_A MLC protein; transcriptional repressor, ROK family protein, DNA binding P helix-turn-helix, phosphotransferase system; 2.70A {Escherichia coli} SCOP: a.4.5.63 c.55.1.10 c.55.1.10 PDB: 3bp8_A
Probab=95.88 E-value=0.011 Score=53.65 Aligned_cols=50 Identities=18% Similarity=0.260 Sum_probs=44.2
Q ss_pred HHHHHHHHHHhhCCCcccHHHHHHHhhcCCChHHHHHHHHHHHhCCCceeeecc
Q 026766 19 HERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVVNI 72 (233)
Q Consensus 19 ~e~lVy~~I~~aG~~GIw~~dik~~t~~~l~~~~v~k~LK~Le~k~lIK~vksV 72 (233)
.++.|+++|...|. +.+++|.+++ +|+..+|+++++.|++.|+|++....
T Consensus 17 n~~~il~~l~~~~~--~sr~~la~~~--~ls~~tv~~~v~~L~~~g~i~~~~~~ 66 (406)
T 1z6r_A 17 NAGAVYRLIDQLGP--VSRIDLSRLA--QLAPASITKIVHEMLEAHLVQELEIK 66 (406)
T ss_dssp HHHHHHHHHHSSCS--CCHHHHHHHT--TCCHHHHHHHHHHHHHHTSEEEC---
T ss_pred HHHHHHHHHHHcCC--cCHHHHHHHH--CCCHHHHHHHHHHHHHCCcEEeeccc
Confidence 56789999998876 9999999999 99999999999999999999996543
No 135
>4esb_A Transcriptional regulator, PADR family; DNA binding protein, HTH fold; 2.50A {Bacillus cereus}
Probab=95.85 E-value=0.021 Score=43.83 Aligned_cols=63 Identities=13% Similarity=0.242 Sum_probs=47.1
Q ss_pred HHHHHHHHHHhhCCCcccHHHHHHHhh---c-CCChHHHHHHHHHHHhCCCceeeecc--cCCCeeeEEeec
Q 026766 19 HERLIYDVIRSKQDMGIWTRDMKRELR---V-NLPDNIVTKSIKSLQNKSLIKEVVNI--HSKGKKHLMAVE 84 (233)
Q Consensus 19 ~e~lVy~~I~~aG~~GIw~~dik~~t~---~-~l~~~~v~k~LK~Le~k~lIK~vksV--~~~~rK~Yml~~ 84 (233)
-+.+|+.+|.. +. ..--+|.+.+. . ++++.+|..+|+.||++|||.+.... ..+.||+|-|.+
T Consensus 10 l~~~IL~~L~~-~~--~~Gyei~~~l~~~~~~~is~gtlY~~L~rLe~~GlI~~~~~~~~~g~~rk~Y~LT~ 78 (115)
T 4esb_A 10 LEGCILYIISQ-EE--VYGYELSTKLNKHGFTFVSEGSIYPLLLRMQKEKLIEGTLKASSLGPKRKYYHITD 78 (115)
T ss_dssp HHHHHHHHHHH-SC--EEHHHHHHHHHHTTCTTCCHHHHHHHHHHHHHTTSEEEEEEECTTSCEEEEEEECH
T ss_pred HHHHHHHHHHc-CC--CCHHHHHHHHHHcCCCCCCcChHHHHHHHHHHCCCeEEEeeecCCCCCcEEEEECH
Confidence 46788888874 33 56667777762 1 58999999999999999999987643 346788886543
No 136
>4g6q_A Putative uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; 2.08A {Kribbella flavida}
Probab=95.84 E-value=0.063 Score=44.19 Aligned_cols=115 Identities=10% Similarity=0.135 Sum_probs=69.4
Q ss_pred HHHHHHHhhCCCcccHHHHHHHhhcC-CChHHHHHHHHHHHhCCCceeeec--ccCCCeeeEEeeccccCCCcccCCccc
Q 026766 22 LIYDVIRSKQDMGIWTRDMKRELRVN-LPDNIVTKSIKSLQNKSLIKEVVN--IHSKGKKHLMAVEFEPSKEISGGAWYS 98 (233)
Q Consensus 22 lVy~~I~~aG~~GIw~~dik~~t~~~-l~~~~v~k~LK~Le~k~lIK~vks--V~~~~rK~Yml~~lePs~eiTGG~wy~ 98 (233)
.|+.++. ..+....+|...+ + +++.+|++.|+.|++-|||+.++- +.....|.|-+..- +.+..
T Consensus 27 ~il~~L~---~~~~~~~~l~~~l--~~~~~~~~s~Hl~~L~~aglv~~~~e~~~~g~~er~y~~~~~--------~~~~~ 93 (182)
T 4g6q_A 27 RITQLLI---GRSLTTRELAELL--PDVATTTLYRQVGILVKAGVLMVTAEHQVRGAVERTYTLNTQ--------AGDAD 93 (182)
T ss_dssp HHHHHTT---TSCEEHHHHHHHC--TTBCHHHHHHHHHHHHHHTSEEEEEEEEETTEEEEEEEECTT--------TTTSS
T ss_pred HHHHHHH---hCCCCHHHHHHHh--cCCCHHHHHHHHHHHHHCCCeEEEEeecccCcceeEEEeccc--------cccCC
Confidence 4555553 4568999999998 8 999999999999999999987764 44445678865431 12222
Q ss_pred CCCCCHH--------HHHHHHHHHHHHhhhCCCCCHHHHHHHHHHhCCc--ccccCHHHHHHHHHHH
Q 026766 99 EGSLDTE--------FIKVVKSQCLKQIIKLKVATLEGISDSIKRSGAF--KVDLTKQQIEEIVRAL 155 (233)
Q Consensus 99 d~e~D~e--------fI~~l~~~~~~~i~~~~~~T~~~I~~~I~~~~i~--~~~Ls~~di~~il~~L 155 (233)
...++.+ |...+.+....|+.+.. ... +-...+++ .+.||.++..++.+.|
T Consensus 94 ~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~-~~~-----~~~~~~~s~~~l~Lt~ee~~el~~el 154 (182)
T 4g6q_A 94 HDGVDADRLRTMFTVFVAGVGGHLDQYLEREQ-IDP-----LADGIAFRQTALNLSDEELAEFLTAF 154 (182)
T ss_dssp CSSCCHHHHHHHHHHHHHHHHHHHHHHTTSSS-CCH-----HHHTCCCCCCCCCCCHHHHHHHHHHH
T ss_pred ccccchHHHHHHHHHHHHHHHHHHHHHHhhcc-cch-----hhhhhcceeeeEECCHHHHHHHHHHH
Confidence 3334433 22233333334443322 111 11223333 3678999988876655
No 137
>2vxz_A Pyrsv_GP04; viral protein, SSPF, ORF165A; 1.7A {Pyrobaculum spherical virus}
Probab=95.66 E-value=0.086 Score=43.33 Aligned_cols=113 Identities=12% Similarity=0.079 Sum_probs=86.0
Q ss_pred HHHHHHHHHhhCCCcccHHHHHHHhhcCCChHHHHHHHHHHHhCCCceeeecccCCCeeeEEeeccccCCCcccCCcccC
Q 026766 20 ERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVVNIHSKGKKHLMAVEFEPSKEISGGAWYSE 99 (233)
Q Consensus 20 e~lVy~~I~~aG~~GIw~~dik~~t~~~l~~~~v~k~LK~Le~k~lIK~vksV~~~~rK~Yml~~lePs~eiTGG~wy~d 99 (233)
-+.|+.++. .|- ..+..|.+++ ||+-.++..+|+.||..|+|++|+. .++.+++|.+- .|-.
T Consensus 13 k~~ILE~Lk-~G~--~~t~~Iak~L--GlShg~aq~~Ly~LeREG~V~~Vk~---GK~ayw~L~~s---------~y~~- 74 (165)
T 2vxz_A 13 LRDILALLA-DGC--KTTSLIQQRL--GLSHGRAKALIYVLEKEGRVTRVAF---GNVALVCLSMD---------QYRQ- 74 (165)
T ss_dssp HHHHHHHHT-TCC--EEHHHHHHHH--TCCHHHHHHHHHHHHHTTSCEEEEE---TTEEEEESCHH---------HHHH-
T ss_pred HHHHHHHHH-hCC--ccHHHHHHHh--CCcHHHHHHHHHHHHhcCceEEEEE---ccEEEEEecHH---------HHHH-
Confidence 356888888 777 9999999999 9999999999999999999988764 34566676221 2221
Q ss_pred CCCCHHHHHHHHHHHHHHhhhC--CCCCHHHHHHHHHHh--------CCcccccCHHHHHHHHHHHh
Q 026766 100 GSLDTEFIKVVKSQCLKQIIKL--KVATLEGISDSIKRS--------GAFKVDLTKQQIEEIVRALV 156 (233)
Q Consensus 100 ~e~D~efI~~l~~~~~~~i~~~--~~~T~~~I~~~I~~~--------~i~~~~Ls~~di~~il~~Lv 156 (233)
.|+.+.+-+..+|... .++|+.++++.|.+- .+..+..+-..+-..|+-+.
T Consensus 75 ------kV~dilrel~~~l~s~gvk~i~p~~l~~li~~d~~~~~~~a~~v~v~~~~~~~l~fl~~~l 135 (165)
T 2vxz_A 75 ------LVDGMIREVERLVTTNKLKFISPPRLHDLIIKDPQARKFFSSIIPIAHRTAIILSFLNHLL 135 (165)
T ss_dssp ------HHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHSHHHHHHHHTTSCCSSCCHHHHHHHHHHH
T ss_pred ------HHHHHHHHHHHHHHHcCCeeeCcHHHHHHHHhCHHHHHHHHHhcCcccchhHHHHHHHHHH
Confidence 6777777777777754 689999999998864 45567777777777776543
No 138
>3f6v_A Possible transcriptional regulator, ARSR family protein; probable transcriptional repressor ARSR family, structural genomics, PSI-2; 1.48A {Rhodococcus SP}
Probab=95.66 E-value=0.016 Score=46.57 Aligned_cols=56 Identities=5% Similarity=0.099 Sum_probs=44.1
Q ss_pred HHHHHHHHHHhhCCCcccHHHHHHHhhcCCChHHHHHHHHHHHhCCCceeeecccCCCeeeEEe
Q 026766 19 HERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVVNIHSKGKKHLMA 82 (233)
Q Consensus 19 ~e~lVy~~I~~aG~~GIw~~dik~~t~~~l~~~~v~k~LK~Le~k~lIK~vksV~~~~rK~Yml 82 (233)
--..|+.+|. +.++...+|...+ ++++.+|++.|+.|++.|||...+ ..+.++|-|
T Consensus 59 ~R~~IL~~L~---~~~~t~~eLa~~l--gls~stvs~hL~~L~~aGlV~~~~---~Gr~~~y~l 114 (151)
T 3f6v_A 59 TRRRLVQLLT---SGEQTVNNLAAHF--PASRSAISQHLRVLTEAGLVTPRK---DGRFRYYRL 114 (151)
T ss_dssp HHHHHHHHGG---GCCEEHHHHHTTS--SSCHHHHHHHHHHHHHTTSEEEEE---ETTEEEEEE
T ss_pred HHHHHHHHHH---hCCCCHHHHHHHH--CcCHHHHHHHHHHHHHCCCEEEEe---cCCEEEEEE
Confidence 3456677775 3459999999999 999999999999999999998865 334455543
No 139
>2zkz_A Transcriptional repressor PAGR; protein-DNA, HTH motif, dimer, DN binding, transcription regulation; 2.00A {Bacillus anthracis}
Probab=95.62 E-value=0.05 Score=40.11 Aligned_cols=47 Identities=15% Similarity=0.261 Sum_probs=38.6
Q ss_pred HHHHHHHHHHhhCCCcccHHHHHHHhhcCCChHHHHHHHHHHHhCCCceeee
Q 026766 19 HERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVV 70 (233)
Q Consensus 19 ~e~lVy~~I~~aG~~GIw~~dik~~t~~~l~~~~v~k~LK~Le~k~lIK~vk 70 (233)
....|+..+...| +....+|.+.+ ++++.++++.|+.|++. +|...+
T Consensus 28 ~Rl~IL~~l~~~~--~~~~~ela~~l--~is~stvs~hL~~L~~~-lv~~~~ 74 (99)
T 2zkz_A 28 MRLKIVNELYKHK--ALNVTQIIQIL--KLPQSTVSQHLCKMRGK-VLKRNR 74 (99)
T ss_dssp HHHHHHHHHHHHS--CEEHHHHHHHH--TCCHHHHHHHHHHHBTT-TBEEEE
T ss_pred HHHHHHHHHHHCC--CcCHHHHHHHH--CcCHHHHHHHHHHHHHH-hhhheE
Confidence 3445665555555 48999999999 99999999999999999 998765
No 140
>3cta_A Riboflavin kinase; structural genomics, transferase, PSI-2, protein structure initiative; 2.20A {Thermoplasma acidophilum dsm 1728} SCOP: a.4.5.28 b.43.5.2
Probab=95.61 E-value=0.032 Score=47.06 Aligned_cols=54 Identities=13% Similarity=0.182 Sum_probs=45.7
Q ss_pred CChHHHHHHHHHHhhCC----CcccHHHHHHHhhcCCChHHHHHHHHHHHhCCCceeeec
Q 026766 16 LTDHERLIYDVIRSKQD----MGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVVN 71 (233)
Q Consensus 16 L~~~e~lVy~~I~~aG~----~GIw~~dik~~t~~~l~~~~v~k~LK~Le~k~lIK~vks 71 (233)
+.+.+..++..|...|+ .|+...++.+++ ++++..|++.|+.||+++||.+.++
T Consensus 5 ~~~~~l~~l~~l~~~~~l~~~~~~s~s~aA~~L--~isq~avSr~I~~LE~~~L~~R~~~ 62 (230)
T 3cta_A 5 TDDQYYRAIKKIKEAAEASNRAYLTSSKLADML--GISQQSASRIIIDLEKNGYITRTVT 62 (230)
T ss_dssp --CHHHHHHHHHHHHTTTSSEEECCHHHHHHHH--TSCHHHHHHHHHHHHHTTSEEEEEE
T ss_pred cHHHHHHHHHHHHHhcccccCCCcCHHHHHHHH--CCCHHHHHHHHHHHHHCCCEEEEEc
Confidence 34577788888877665 678899999999 9999999999999999999988754
No 141
>2hoe_A N-acetylglucosamine kinase; TM1224, structural genomics, PSI-2, protein structure initiative, joint center structural genomics, JCSG; 2.46A {Thermotoga maritima} SCOP: a.4.5.63 c.55.1.10 c.55.1.10
Probab=95.48 E-value=0.01 Score=53.78 Aligned_cols=48 Identities=21% Similarity=0.230 Sum_probs=43.1
Q ss_pred HHHHHHHHHHhhCCCcccHHHHHHHhhcCCChHHHHHHHHHHHhCCCceeeec
Q 026766 19 HERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVVN 71 (233)
Q Consensus 19 ~e~lVy~~I~~aG~~GIw~~dik~~t~~~l~~~~v~k~LK~Le~k~lIK~vks 71 (233)
.++.|+++|. .|. +.+.||.++| +|+..+|+++++.|++.|+|++...
T Consensus 21 ~~~~il~~l~-~~~--~sr~~la~~~--gls~~tv~~~v~~L~~~gli~~~~~ 68 (380)
T 2hoe_A 21 NISRILKRIM-KSP--VSRVELAEEL--GLTKTTVGEIAKIFLEKGIVVEEKD 68 (380)
T ss_dssp -CCCSHHHHH-HSC--BCHHHHHHHH--TCCHHHHHHHHHHHHHHTSEEEEEC
T ss_pred HHHHHHHHHH-cCC--cCHHHHHHHH--CcCHHHHHHHHHHHHHCCCEEeecC
Confidence 4557999999 766 9999999999 9999999999999999999999764
No 142
>4esf_A PADR-like transcriptional regulator; PADR family, DNA binding protein, HTH fold; 2.20A {Bacillus cereus}
Probab=95.47 E-value=0.046 Score=42.12 Aligned_cols=62 Identities=16% Similarity=0.256 Sum_probs=43.9
Q ss_pred HHHHHHHHHhhCCCcccHHHHHHHh---hc-CCChHHHHHHHHHHHhCCCceeeecc--cCCCeeeEEeec
Q 026766 20 ERLIYDVIRSKQDMGIWTRDMKREL---RV-NLPDNIVTKSIKSLQNKSLIKEVVNI--HSKGKKHLMAVE 84 (233)
Q Consensus 20 e~lVy~~I~~aG~~GIw~~dik~~t---~~-~l~~~~v~k~LK~Le~k~lIK~vksV--~~~~rK~Yml~~ 84 (233)
+.+|+.+|.... ..--+|.+.+ +. +++..+|..+|+.||++|||.+.... ..+.||+|-|.+
T Consensus 13 ~~~IL~lL~~~p---~~Gyei~~~l~~~g~~~is~gtlY~~L~rLe~~GlI~~~~~~~~~g~~rk~Y~LT~ 80 (117)
T 4esf_A 13 EGCVLEIISRRE---TYGYEITRHLNDLGFTEVVEGTVYTILVRLEKKKLVNIEKKPSDMGPPRKFYSLNE 80 (117)
T ss_dssp HHHHHHHHHHSC---BCHHHHHHHHHHHTCTTCCHHHHHHHHHHHHHTTCEEEEEEC-----CEEEEEECH
T ss_pred HHHHHHHHHcCC---CCHHHHHHHHHHcCCCCCCccHHHHHHHHHHHCCCEEEEeecCCCCCCceEEEECH
Confidence 567888887533 4445555554 22 68999999999999999999987643 346788886544
No 143
>1xn7_A Hypothetical protein YHGG; alpha+beta, GFT structural genomics, protein structure initiative, PSI, NESG; NMR {Escherichia coli} SCOP: a.4.5.62
Probab=95.43 E-value=0.058 Score=39.10 Aligned_cols=46 Identities=11% Similarity=0.126 Sum_probs=36.7
Q ss_pred HHHHHHhhhCCCCCHHHHHHHHHHhCCcccccCHHHHHHHHHHHhcCCeEEEEe
Q 026766 112 SQCLKQIIKLKVATLEGISDSIKRSGAFKVDLTKQQIEEIVRALVLDNQIMEVK 165 (233)
Q Consensus 112 ~~~~~~i~~~~~~T~~~I~~~I~~~~i~~~~Ls~~di~~il~~Lv~Dg~ie~v~ 165 (233)
+.++++|+.++.+|++|+++.+ .+|+.-|+.-|+.|+-.|+|++++
T Consensus 5 ~~Il~~L~~~g~vsv~eLa~~l--------~VS~~TIRrdL~~Le~~G~l~R~~ 50 (78)
T 1xn7_A 5 IQVRDLLALRGRMEAAQISQTL--------NTPQPMINAMLQQLESMGKAVRIQ 50 (78)
T ss_dssp HHHHHHHHHSCSBCHHHHHHHT--------TCCHHHHHHHHHHHHHHTSEEEEC
T ss_pred HHHHHHHHHcCCCcHHHHHHHH--------CcCHHHHHHHHHHHHHCCCEEEec
Confidence 4566777777777777777654 378899999999999999999874
No 144
>3elk_A Putative transcriptional regulator TA0346; structural genomics, PSI-2, prote structure initiative; 1.70A {Thermoplasma acidophilum}
Probab=95.41 E-value=0.03 Score=43.20 Aligned_cols=62 Identities=6% Similarity=0.132 Sum_probs=44.6
Q ss_pred HHHHHHHHHHhhCCCcccHHHHHHHhh----cCCChHHHHHHHHHHHhCCCceeeec--ccCCCeeeEEee
Q 026766 19 HERLIYDVIRSKQDMGIWTRDMKRELR----VNLPDNIVTKSIKSLQNKSLIKEVVN--IHSKGKKHLMAV 83 (233)
Q Consensus 19 ~e~lVy~~I~~aG~~GIw~~dik~~t~----~~l~~~~v~k~LK~Le~k~lIK~vks--V~~~~rK~Yml~ 83 (233)
-+..|+.++.. |. ..--+|.+.+. ..+++.+|..+|+.||+.|||.+... -..+.||+|-|.
T Consensus 15 l~~~IL~lL~~-~p--~~gyel~~~l~~~~~~~i~~gtly~~L~~Le~~GlI~~~~~~~~~~~~rk~Y~lT 82 (117)
T 3elk_A 15 ITLYILKELVK-RP--MHGYELQKSMFETTGQALPQGSIYILLKTMKERGFVISESSVNEKGQQLTVYHIT 82 (117)
T ss_dssp HHHHHHHHHHH-SC--EEHHHHHHHHHHHHSCCCCTTHHHHHHHHHHHHTSEEEEEEEC-CCCEEEEEEEC
T ss_pred HHHHHHHHHHc-CC--CCHHHHHHHHHHHhCCCCCcchHHHHHHHHHHCCCEEEEeeecCCCCCceEEEEC
Confidence 35678888865 33 55556666651 13899999999999999999998764 244678888544
No 145
>2zcw_A TTHA1359, transcriptional regulator, FNR/CRP family; stationary phase, DNA-binding, transcription regulation; 1.50A {Thermus thermophilus}
Probab=95.40 E-value=0.05 Score=43.63 Aligned_cols=51 Identities=14% Similarity=0.130 Sum_probs=42.5
Q ss_pred CChHHHHHHHHHHhhCCCc-----------ccHHHHHHHhhcCCChHHHHHHHHHHHhCCCcee
Q 026766 16 LTDHERLIYDVIRSKQDMG-----------IWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKE 68 (233)
Q Consensus 16 L~~~e~lVy~~I~~aG~~G-----------Iw~~dik~~t~~~l~~~~v~k~LK~Le~k~lIK~ 68 (233)
.+.++++..-+++-+...| +.+.+|..-+ |++..+|+|+|+.|+++|+|+.
T Consensus 117 ~~~~~Rl~~~L~~l~~~~~~~~~~~~~~~~~t~~~lA~~l--g~sr~tvsR~l~~L~~~g~I~~ 178 (202)
T 2zcw_A 117 QRLKNRMAAALLELSETPLAHEEEGKVVLKATHDELAAAV--GSVRETVTKVIGELAREGYIRS 178 (202)
T ss_dssp CCHHHHHHHHHHHHTTSTTEEEETTEEEEECCHHHHHHHH--TCCHHHHHHHHHHHHHTTSEEE
T ss_pred CCHHHHHHHHHHHHHHhcCCCCCCcEEccCCCHHHHHHHh--CCCHHHHHHHHHHHHHCCCEEe
Confidence 4667877776766554443 6899999999 9999999999999999999974
No 146
>2dql_A PEX protein; circadian clock associated protein, circadian clock protein; 1.70A {Anabaena SP}
Probab=95.39 E-value=0.03 Score=42.96 Aligned_cols=63 Identities=16% Similarity=0.222 Sum_probs=44.0
Q ss_pred HHHHHHHhhCCCcccH-HHHHHHhhc-CCChHHHHHHHHHHHhCCCceeeecc---cCCCeeeEEeec
Q 026766 22 LIYDVIRSKQDMGIWT-RDMKRELRV-NLPDNIVTKSIKSLQNKSLIKEVVNI---HSKGKKHLMAVE 84 (233)
Q Consensus 22 lVy~~I~~aG~~GIw~-~dik~~t~~-~l~~~~v~k~LK~Le~k~lIK~vksV---~~~~rK~Yml~~ 84 (233)
+|+.+|.+....|-.. +.|...++. +++..+|..+|+.||++|||.+.... ..+.||+|-|.+
T Consensus 26 ~IL~lL~~~~~~Gyei~~~l~~~~~~~~is~gtLY~~L~rLe~~GlI~~~~~~~~~~~~~rk~Y~LT~ 93 (115)
T 2dql_A 26 YILYVLLQGESYGTELIQQLETEHPTYRLSDTVLYSAIKFLEDNRAITGYWKKLEGRGRPRRMYQVSP 93 (115)
T ss_dssp HHHHHHTTSCBCHHHHHHHHHHHCTTEECCHHHHHHHHHHHHHTTSEEEEEECCTTCSSCEEEEEECG
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHcCCCCCCcchHHHHHHHHHHCCCEEEEeeecCCCCCCcEEEEECH
Confidence 3788887644444432 334433322 69999999999999999999987654 256788887654
No 147
>1bja_A Transcription regulatory protein MOTA; activation domain, middle mode transcription, alpha helical structure, transcription regulation; 2.19A {Enterobacteria phage T4} SCOP: a.4.5.9 PDB: 1i1s_A
Probab=95.37 E-value=0.031 Score=42.34 Aligned_cols=50 Identities=24% Similarity=0.330 Sum_probs=47.1
Q ss_pred CCCChHHHHHHHHHHhhCCCcccHHHHHH-HhhcCCChHHHHHHHHHHHhCCCce
Q 026766 14 DSLTDHERLIYDVIRSKQDMGIWTRDMKR-ELRVNLPDNIVTKSIKSLQNKSLIK 67 (233)
Q Consensus 14 ~~L~~~e~lVy~~I~~aG~~GIw~~dik~-~t~~~l~~~~v~k~LK~Le~k~lIK 67 (233)
.+|+.-|.-++-.|...+ .+..++|.. .. .|..++|+|.|+.|+++|||.
T Consensus 12 ~~L~~~QfsiL~~L~~~~--~~t~~~Lae~~l--~~drstvsrnl~~L~r~GlVe 62 (95)
T 1bja_A 12 DVLNEKTATILITIAKKD--FITAAEVREVHP--DLGNAVVNSNIGVLIKKGLVE 62 (95)
T ss_dssp TSSCHHHHHHHHHHHHST--TBCHHHHHHTCT--TSCHHHHHHHHHHHHTTTSEE
T ss_pred cCCCHHHHHHHHHHHHCC--CCCHHHHHHHHh--cccHHHHHHHHHHHHHCCCee
Confidence 579999999999998887 799999999 88 999999999999999999997
No 148
>3f8b_A Transcriptional regulator, PADR-like family; winged helix turn helix, transcription regulator; 2.00A {Lactococcus lactis subsp} SCOP: a.4.5.0 PDB: 3f8c_A* 3f8f_A*
Probab=95.37 E-value=0.047 Score=41.83 Aligned_cols=63 Identities=11% Similarity=0.232 Sum_probs=43.9
Q ss_pred HHHHHHHHHHhhCCCcccHHHHHHHhh-----c-CCChHHHHHHHHHHHhCCCceeeec--ccCCCeeeEEeec
Q 026766 19 HERLIYDVIRSKQDMGIWTRDMKRELR-----V-NLPDNIVTKSIKSLQNKSLIKEVVN--IHSKGKKHLMAVE 84 (233)
Q Consensus 19 ~e~lVy~~I~~aG~~GIw~~dik~~t~-----~-~l~~~~v~k~LK~Le~k~lIK~vks--V~~~~rK~Yml~~ 84 (233)
-+..|+.+|.+.- ..--+|.+.+. . ++++.+|..+|+.||++|||.+... ...+.||+|-|.+
T Consensus 13 l~~~IL~~L~~~~---~~Gyei~~~l~~~~~~~~~i~~gtly~~L~rLe~~GlI~~~~~~~~~~~~rk~Y~LT~ 83 (116)
T 3f8b_A 13 TNVILLNVLKQGD---NYVYGIIKQVKEASNGEMELNEATLYTIFKRLEKDGIISSYWGDESQGGRRKYYRLTE 83 (116)
T ss_dssp HHHHHHHHHHHCC---BCHHHHHHHHHHHTTTCCCCCHHHHHHHHHHHHHTTSEEEEEEC----CCEEEEEECH
T ss_pred HHHHHHHHHHhCC---CCHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHCCCEEEEeeccCCCCCceEEEECH
Confidence 3567888887633 34445555441 1 7999999999999999999998763 3557888886543
No 149
>1z05_A Transcriptional regulator, ROK family; structural genomics, protein structure initiative, midwest center for structural genomics; 2.00A {Vibrio cholerae o1 biovar eltor} SCOP: a.4.5.63 c.55.1.10 c.55.1.10
Probab=95.27 E-value=0.032 Score=51.24 Aligned_cols=48 Identities=27% Similarity=0.377 Sum_probs=45.0
Q ss_pred HHHHHHHHHHhhCCCcccHHHHHHHhhcCCChHHHHHHHHHHHhCCCceeee
Q 026766 19 HERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVV 70 (233)
Q Consensus 19 ~e~lVy~~I~~aG~~GIw~~dik~~t~~~l~~~~v~k~LK~Le~k~lIK~vk 70 (233)
.++.|+++|...|. +.+.+|.+.+ +|+..+|+++++.|++.|+|++..
T Consensus 40 n~~~il~~l~~~~~--~sr~ela~~~--gls~~tv~~~v~~L~~~gli~~~~ 87 (429)
T 1z05_A 40 NAGRVYKLIDQKGP--ISRIDLSKES--ELAPASITKITRELIDAHLIHETT 87 (429)
T ss_dssp HHHHHHHHHHHHCS--BCHHHHHHHH--TCCHHHHHHHHHHHHHTTSEEEEC
T ss_pred HHHHHHHHHHHcCC--cCHHHHHHHH--CCCHHHHHHHHHHHHHCCCEEecc
Confidence 56789999999886 9999999999 999999999999999999999975
No 150
>3ryp_A Catabolite gene activator; CAMP receptor protein (CRP), allostery, DNA binding cyclic A transcription regulator; HET: CMP; 1.60A {Escherichia coli} PDB: 2cgp_A* 3hif_A 1g6n_A* 3ryr_A* 1i5z_A* 1j59_A* 1lb2_A* 1run_A* 1zrc_A* 1zrd_A* 1zre_A* 1zrf_A* 2gzw_A* 2wc2_A 3iyd_G* 3n4m_A* 3qop_A* 3rdi_A* 3rou_A* 3rpq_A* ...
Probab=95.20 E-value=0.07 Score=42.62 Aligned_cols=51 Identities=16% Similarity=0.252 Sum_probs=41.3
Q ss_pred CChHHHHHHHHHHhhCCC-----------cccHHHHHHHhhcCCChHHHHHHHHHHHhCCCcee
Q 026766 16 LTDHERLIYDVIRSKQDM-----------GIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKE 68 (233)
Q Consensus 16 L~~~e~lVy~~I~~aG~~-----------GIw~~dik~~t~~~l~~~~v~k~LK~Le~k~lIK~ 68 (233)
.+..+++..-+++-+... -+.+.+|..-+ |++..+|+|+|+.|+++|+|+.
T Consensus 138 ~~~~~Rl~~~L~~l~~~~~~~~~~~~~~~~~t~~~iA~~l--g~sr~tvsR~l~~L~~~g~I~~ 199 (210)
T 3ryp_A 138 LDVTGRIAQTLLNLAKQPDAMTHPDGMQIKITRQEIGQIV--GCSRETVGRILKMLEDQNLISA 199 (210)
T ss_dssp SCHHHHHHHHHHHHTTSTTCEEETTEEEEECCHHHHHHHH--TCCHHHHHHHHHHHHHTTSEEE
T ss_pred CCHHHHHHHHHHHHHHhcCcCCCCCceEeccCHHHHHHHh--CCcHHHHHHHHHHHHHCCcEEe
Confidence 456777776666654332 25789999999 9999999999999999999975
No 151
>3iwz_A CAP-like, catabolite activation-like protein; XCC, pathogenicity, CRP, CLP, C-DI-GMP receptor, quorum SENS binding, transcription; 2.30A {Xanthomonas campestris PV}
Probab=95.18 E-value=0.07 Score=43.25 Aligned_cols=51 Identities=14% Similarity=0.292 Sum_probs=41.5
Q ss_pred CChHHHHHHHHHHhhCCCc-----------ccHHHHHHHhhcCCChHHHHHHHHHHHhCCCcee
Q 026766 16 LTDHERLIYDVIRSKQDMG-----------IWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKE 68 (233)
Q Consensus 16 L~~~e~lVy~~I~~aG~~G-----------Iw~~dik~~t~~~l~~~~v~k~LK~Le~k~lIK~ 68 (233)
.+..+++..-+++-+...| +.+.+|..-+ |++..+|+|+|+.|+++|+|+.
T Consensus 158 ~~~~~Rl~~~L~~l~~~~~~~~~~~~~~~~lt~~~lA~~l--g~sr~tvsR~l~~L~~~g~I~~ 219 (230)
T 3iwz_A 158 LDVTDRIVRTLHDLSKEPEAMSHPQGTQLRVSRQELARLV--GCSREMAGRVLKKLQADGLLHA 219 (230)
T ss_dssp CCHHHHHHHHHHHHTTSTTCEEETTEEEEECCHHHHHHHH--TCCHHHHHHHHHHHHHTTSEEE
T ss_pred CCHHHHHHHHHHHHHHhhCCCCCCCceecCCCHHHHHHHh--CCcHHHHHHHHHHHHHCCCEEE
Confidence 4567777666666544322 6899999999 9999999999999999999975
No 152
>1yg2_A Gene activator APHA; virulence factor, winged helix, transcripti factor, transcription; 2.20A {Vibrio cholerae} SCOP: a.4.5.61
Probab=95.15 E-value=0.051 Score=44.32 Aligned_cols=62 Identities=15% Similarity=0.280 Sum_probs=43.3
Q ss_pred HHHHHHHHHhhCCCcccHHHHHHHhhc------CCChHHHHHHHHHHHhCCCceeeeccc--CCCeeeEEeec
Q 026766 20 ERLIYDVIRSKQDMGIWTRDMKRELRV------NLPDNIVTKSIKSLQNKSLIKEVVNIH--SKGKKHLMAVE 84 (233)
Q Consensus 20 e~lVy~~I~~aG~~GIw~~dik~~t~~------~l~~~~v~k~LK~Le~k~lIK~vksV~--~~~rK~Yml~~ 84 (233)
+..|+.++.. |. +.--+|++.... +++..+|.++|+.||++|||.+..... .+.||+|-|.+
T Consensus 4 ~~~iL~lL~~-~~--~~gyel~~~l~~~~~~~~~~s~~~ly~~L~~Le~~GlI~~~~~~~~~~~~r~~Y~lT~ 73 (179)
T 1yg2_A 4 PHVILTVLST-RD--ATGYDITKEFSASIGYFWKASHQQVYRELNKMGEQGLVTCVLEPQEGKPDRKVYSITQ 73 (179)
T ss_dssp HHHHHHHHHH-CC--BCHHHHHHHHTTGGGGTCCCCHHHHHHHHHHHHHTTSEEECCC---------CEEECH
T ss_pred HHHHHHHHhc-CC--CCHHHHHHHHHHHhCCccCCCcCcHHHHHHHHHHCCCeEEEeecCCCCCCceEEEeCh
Confidence 4578888875 43 777888887721 589999999999999999999866543 35789996554
No 153
>2e1n_A PEX, period extender; circadian clock, DNA binding protein, circadian clock protei; 1.80A {Synechococcus elongatus pcc 7942}
Probab=95.10 E-value=0.025 Score=45.12 Aligned_cols=69 Identities=12% Similarity=0.200 Sum_probs=46.7
Q ss_pred CChHHHHHHHHHHhhCCCcccH-HHHHHHhhc-CCChHHHHHHHHHHHhCCCceeeecc---cCCCeeeEEeec
Q 026766 16 LTDHERLIYDVIRSKQDMGIWT-RDMKRELRV-NLPDNIVTKSIKSLQNKSLIKEVVNI---HSKGKKHLMAVE 84 (233)
Q Consensus 16 L~~~e~lVy~~I~~aG~~GIw~-~dik~~t~~-~l~~~~v~k~LK~Le~k~lIK~vksV---~~~~rK~Yml~~ 84 (233)
++..+.+|+.+|.+....|-.. +.|...++. +++..+|..+|+.||++|||.+.... ..+.||+|-|.+
T Consensus 32 ~~~~~~~IL~lL~~~~~~Gyei~k~l~~~~~~~~is~gtLYp~L~rLe~~GlI~~~~~~~~~~g~~rk~Y~LT~ 105 (138)
T 2e1n_A 32 KELAVCYVLAVLRHEDSYGTELIQHLETHWPNYRLSDTVLYTALKFLEDEQIISGYWKKVEGRGRPRRMYQLAQ 105 (138)
T ss_dssp HHHHHHHHHHHHTTSCEEHHHHHHHHHHHSTTEECCHHHHHHHHHHHHHTTSEEEEEECCTTCSSCEEEEEESC
T ss_pred chHHHHHHHHHHHhCCCcHHHHHHHHHHHcCCCCCCccHHHHHHHHHHHCCCEEEEeecccCCCCCcEEEEECH
Confidence 4456667888887533333322 234433312 69999999999999999999987654 356788886544
No 154
>2xzm_8 RPS25E,; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_8
Probab=95.08 E-value=0.045 Score=44.31 Aligned_cols=60 Identities=8% Similarity=0.192 Sum_probs=48.2
Q ss_pred HHHHHHHHH-hhCC--CcccHHHHHHHhhcCCChHHHHHHHHHHHhCCCceeeecccCCCeeeEEee
Q 026766 20 ERLIYDVIR-SKQD--MGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVVNIHSKGKKHLMAV 83 (233)
Q Consensus 20 e~lVy~~I~-~aG~--~GIw~~dik~~t~~~l~~~~v~k~LK~Le~k~lIK~vksV~~~~rK~Yml~ 83 (233)
+.-.|+-|. +--+ +=|+...|..++ ++.-+.-+++|+.|+++|+|+.| ++|.+..||.-.
T Consensus 46 Dk~tydKL~KEVpk~gKlITpsvlseRl--kI~gSLARkaLreL~~kGlIk~V--~kh~~q~IYTra 108 (143)
T 2xzm_8 46 EKKNVESIINNPSKVGKVLTVSTVVEKL--KVNGSLARQLMRTMADRKLVEKV--AKNGNQWVYSVI 108 (143)
T ss_dssp CHHHHHHHHTCCTTSCSEECHHHHHHHH--CBCHHHHHHHHHHHHHTTSEEEE--EEETTEEEEEET
T ss_pred cHHHHHHHHHHhcccceeecHHHHHHHh--cchHHHHHHHHHHHHHCCCEEEE--ecCCCeEEEecC
Confidence 345566555 3333 469999999999 99999999999999999999998 356688999544
No 155
>1zyb_A Transcription regulator, CRP family; NP_813211.1, structural genomics, joint center for structura genomics, JCSG; 2.15A {Bacteroides thetaiotaomicron} SCOP: a.4.5.4 b.82.3.2
Probab=94.99 E-value=0.072 Score=43.83 Aligned_cols=54 Identities=19% Similarity=0.229 Sum_probs=44.4
Q ss_pred CCCCChHHHHHHHHHHhhCCCc------ccHHHHHHHhhcCCChHHHHHHHHHHHhCCCcee
Q 026766 13 SDSLTDHERLIYDVIRSKQDMG------IWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKE 68 (233)
Q Consensus 13 ~~~L~~~e~lVy~~I~~aG~~G------Iw~~dik~~t~~~l~~~~v~k~LK~Le~k~lIK~ 68 (233)
+...+.++++..-+++-+...| +.+.+|..-+ |++..+|+|+|+.|+++|+|+.
T Consensus 159 l~~~~~~~Rl~~~L~~l~~~~~~~~~~~~t~~~lA~~l--G~sr~tvsR~l~~l~~~glI~~ 218 (232)
T 1zyb_A 159 EPTLDLKSKIIRFFLSHCEKPQGEKTFKVKMDDLARCL--DDTRLNISKTLNELQDNGLIEL 218 (232)
T ss_dssp CCCCSHHHHHHHHHHTTCSSSSSCEEEECCHHHHHHHH--TSCHHHHHHHHHHHHHTTSCEE
T ss_pred HhhcCHHHHHHHHHHHHHhhcCCeEEecCCHHHHHHHh--CCChhHHHHHHHHHHHCCCEEe
Confidence 4456778887776666554433 7899999999 9999999999999999999974
No 156
>3b02_A Transcriptional regulator, CRP family; structural genomics, riken structural genomics/proteomics in RSGI; 1.92A {Thermus thermophilus} PDB: 2zdb_A
Probab=94.99 E-value=0.055 Score=43.21 Aligned_cols=53 Identities=11% Similarity=0.074 Sum_probs=43.0
Q ss_pred CCCChHHHHHHHHHHhhCCCc-----------ccHHHHHHHhhcCCChHHHHHHHHHHHhCCCcee
Q 026766 14 DSLTDHERLIYDVIRSKQDMG-----------IWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKE 68 (233)
Q Consensus 14 ~~L~~~e~lVy~~I~~aG~~G-----------Iw~~dik~~t~~~l~~~~v~k~LK~Le~k~lIK~ 68 (233)
...+.++++..-+++-+...| +.+.+|..-+ |++..+|+|+|+.|+++|+|+.
T Consensus 108 ~~~~~~~Rl~~~L~~l~~~~~~~~~~~~~~~~~t~~~lA~~l--g~sr~tvsR~l~~L~~~g~I~~ 171 (195)
T 3b02_A 108 QTGELRARIARYLLFLADTPLSARDRQGIYVTVSHEEIADAT--ASIRESVSKVLADLRREGLIAT 171 (195)
T ss_dssp TSSCHHHHHHHHHHHHTTSTTEEEETTEEEEECCHHHHHHTT--TSCHHHHHHHHHHHHHHTSEEE
T ss_pred hcCCHHHHHHHHHHHHHHHcCCCCCCCeeeccCCHHHHHHHh--CCCHHHHHHHHHHHHHCCCEEe
Confidence 345678877776666443333 6899999999 9999999999999999999975
No 157
>2oz6_A Virulence factor regulator; winged helix, helix-turn-helix, transcription factor, CAMP-B proteins, CAMP receptor protein; HET: CMP; 2.80A {Pseudomonas aeruginosa} SCOP: a.4.5.4 b.82.3.2
Probab=94.97 E-value=0.089 Score=41.88 Aligned_cols=51 Identities=20% Similarity=0.272 Sum_probs=39.6
Q ss_pred CChHHHHHHHHHHhhCC-------C----cccHHHHHHHhhcCCChHHHHHHHHHHHhCCCcee
Q 026766 16 LTDHERLIYDVIRSKQD-------M----GIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKE 68 (233)
Q Consensus 16 L~~~e~lVy~~I~~aG~-------~----GIw~~dik~~t~~~l~~~~v~k~LK~Le~k~lIK~ 68 (233)
.+..+++..-+++-+.. . -+.+++|..-+ |++..+|+|+|+.|+++|+|+.
T Consensus 135 ~~~~~Rl~~~L~~l~~~~~~~~~~~~~~~~~t~~~lA~~l--g~sr~tvsR~l~~l~~~g~I~~ 196 (207)
T 2oz6_A 135 LDVTGRVARTLLDLCQQPDAMTHPDGMQIKITRQEIGRIV--GCSREMVGRVLKSLEEQGLVHV 196 (207)
T ss_dssp CCHHHHHHHHHHHHTTSTTCEEETTEEEEECCHHHHHHHH--TSCHHHHHHHHHHHHHTTSEEE
T ss_pred CCHHHHHHHHHHHHHHhcCCCCCCCceecccCHHHHHHHh--CCCHHHHHHHHHHHHHCCCEEe
Confidence 45677765545443321 1 26899999999 9999999999999999999975
No 158
>3hhh_A Transcriptional regulator, PADR family; PF03551, structural PSI-2, protein structure initiative, midwest center for STR genomics, MCSG; 2.70A {Enterococcus faecalis} SCOP: a.4.5.0
Probab=94.95 E-value=0.055 Score=41.63 Aligned_cols=63 Identities=13% Similarity=0.204 Sum_probs=45.1
Q ss_pred HHHHHHHHHHhhCCCcccHHHHHHHhh---c-CCChHHHHHHHHHHHhCCCceeeecc--cCCCeeeEEeec
Q 026766 19 HERLIYDVIRSKQDMGIWTRDMKRELR---V-NLPDNIVTKSIKSLQNKSLIKEVVNI--HSKGKKHLMAVE 84 (233)
Q Consensus 19 ~e~lVy~~I~~aG~~GIw~~dik~~t~---~-~l~~~~v~k~LK~Le~k~lIK~vksV--~~~~rK~Yml~~ 84 (233)
-+.+|+.+|.+.- ..--+|.+.+. . ++++.+|..+|+.||++|||.+.... ..+.||+|-|.+
T Consensus 14 l~~~IL~lL~~~p---~~Gyei~~~l~~~g~~~is~gtlY~~L~rLe~~GlI~~~~~~~~~g~~rk~Y~lT~ 82 (116)
T 3hhh_A 14 LEGLVLAIIQRKE---TYGYEITKILNDQGFTEIVEGTVYTILLRLEKNQWVIAEKKPSEKGPMRKFYRLTS 82 (116)
T ss_dssp HHHHHHHHHHHSC---BCHHHHHHHHHTTSCSSCCHHHHHHHHHHHHHTTSEEEEEEECC--CEEEEEEECH
T ss_pred HHHHHHHHHhcCC---CCHHHHHHHHHHcCCCCCCccHHHHHHHHHHHCCCEEEEeeecCCCCCceEEEECH
Confidence 3667888887533 44456666652 2 68999999999999999999987642 346788886543
No 159
>3ri2_A Transcriptional regulator, PADR-like family; PSI-biology, midwest center for structural genomics, MCSG, transcription regulator; 2.10A {Eggerthella lenta} PDB: 4ejo_A
Probab=94.82 E-value=0.055 Score=42.20 Aligned_cols=61 Identities=15% Similarity=0.250 Sum_probs=42.7
Q ss_pred HHHHHHHHHhhCCCcccHHHHHHHh---hcCCChHHHHHHHHHHHhCCCceeeecc-cCCCeeeEEeec
Q 026766 20 ERLIYDVIRSKQDMGIWTRDMKREL---RVNLPDNIVTKSIKSLQNKSLIKEVVNI-HSKGKKHLMAVE 84 (233)
Q Consensus 20 e~lVy~~I~~aG~~GIw~~dik~~t---~~~l~~~~v~k~LK~Le~k~lIK~vksV-~~~~rK~Yml~~ 84 (233)
+..|+.++. +. ..--+|.+.+ +.++++.+|..+|++||++|||.+.... ..+.||+|-|.+
T Consensus 23 ~~~IL~lL~--~p--~~GYei~~~l~~~~~~is~gtlY~~L~rLe~~GlI~~~~~~~~~~~rk~Y~LT~ 87 (123)
T 3ri2_A 23 VMLVLSQLR--EP--AYGYALVKSLADHGIPIEANTLYPLMRRLESQGLLASEWDNGGSKPRKYYRTTD 87 (123)
T ss_dssp HHHHHHHTT--SC--EEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSEEEEEEECSSCEEEEEEECH
T ss_pred HHHHHHHHc--CC--CCHHHHHHHHHHhCCCCCcchHHHHHHHHHHCCCEEEEeccCCCCCceEEEECH
Confidence 445666665 32 4444555553 1389999999999999999999987643 347788886543
No 160
>3u1d_A Uncharacterized protein; GNTR-superfamily, structural genomics, PSI-biology, midwest for structural genomics, MCSG; 1.80A {Halomicrobium mukohataei}
Probab=94.81 E-value=0.15 Score=41.60 Aligned_cols=51 Identities=6% Similarity=0.075 Sum_probs=42.5
Q ss_pred HHHHHHHHHHhhCCCcccHHHHHHHhhcC-CChHHHHHHHHHHHhCCCceeeec
Q 026766 19 HERLIYDVIRSKQDMGIWTRDMKRELRVN-LPDNIVTKSIKSLQNKSLIKEVVN 71 (233)
Q Consensus 19 ~e~lVy~~I~~aG~~GIw~~dik~~t~~~-l~~~~v~k~LK~Le~k~lIK~vks 71 (233)
....|+.++......-....+|.... . |.+.+|.+.|+.|++.|||+.+..
T Consensus 30 tR~~IL~~Ll~~p~~~~ta~eL~~~l--~~lS~aTVyrhL~~L~eaGLV~~~~~ 81 (151)
T 3u1d_A 30 TRLDVLHQILAQPDGVLSVEELLYRN--PDETEANLRYHVDELVDRGIVEKIPV 81 (151)
T ss_dssp HHHHHHHHHHHSTTSCBCHHHHHHHC--TTSCHHHHHHHHHHHHHTTSEEEEEC
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHhc--CCCCHHHHHHHHHHHHHCCCeEEeec
Confidence 45567888877754447889999888 7 999999999999999999998753
No 161
>3t8r_A Staphylococcus aureus CYMR; transcriptional regulator protein, dimer, sulfenic acid, UNK function; 1.70A {Staphylococcus aureus} PDB: 3t8t_A
Probab=94.78 E-value=0.05 Score=43.19 Aligned_cols=65 Identities=23% Similarity=0.245 Sum_probs=47.7
Q ss_pred HHHHHHHHHhhC-CCcccHHHHHHHhhcCCChHHHHHHHHHHHhCCCceeeecccCCCeeeEEeeccccCCCcc
Q 026766 20 ERLIYDVIRSKQ-DMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVVNIHSKGKKHLMAVEFEPSKEIS 92 (233)
Q Consensus 20 e~lVy~~I~~aG-~~GIw~~dik~~t~~~l~~~~v~k~LK~Le~k~lIK~vksV~~~~rK~Yml~~lePs~eiT 92 (233)
.-.++-+|.... +.-+..++|..+. +++.+.|.|+|..|.+.|||++++..+ -=|.|. .|.++||
T Consensus 13 Al~~L~~La~~~~~~~~s~~~IA~~~--~i~~~~l~kil~~L~~aGlv~s~rG~~----GGy~La--r~p~~It 78 (143)
T 3t8r_A 13 GLTLMISLAKKEGQGCISLKSIAEEN--NLSDLYLEQLVGPLRNAGLIRSVRGAK----GGYQLR--VPAEEIS 78 (143)
T ss_dssp HHHHHHHHHTTTTSCCEEHHHHHHHT--TCCHHHHHHHHHHHHHTTSEEECSSSS----SEEEES--SCGGGCB
T ss_pred HHHHHHHHHhCCCCCCcCHHHHHHHH--CcCHHHHHHHHHHHHHCCEEEecCCCC----CCeeec--CCcccCC
Confidence 334444555443 3459999999999 999999999999999999998765443 147665 4666666
No 162
>1ft9_A Carbon monoxide oxidation system transcription regulator; heme sensor, catabolite gene activator protein; HET: HEM; 2.60A {Rhodospirillum rubrum} SCOP: a.4.5.4 b.82.3.1
Probab=94.74 E-value=0.055 Score=44.03 Aligned_cols=62 Identities=13% Similarity=0.212 Sum_probs=46.2
Q ss_pred CChHHHHHHHHHHhhCCCc------------ccHHHHHHHhhcCCChHHHHHHHHHHHhCCCceeeecccCCCeeeEEee
Q 026766 16 LTDHERLIYDVIRSKQDMG------------IWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVVNIHSKGKKHLMAV 83 (233)
Q Consensus 16 L~~~e~lVy~~I~~aG~~G------------Iw~~dik~~t~~~l~~~~v~k~LK~Le~k~lIK~vksV~~~~rK~Yml~ 83 (233)
.+..+++..-+++-+...| +.+.+|..-+ |++..+|+|+|+.|++.|+|+. .+++++.+-
T Consensus 133 ~~~~~Rl~~~L~~l~~~~~~~~~~~~~~~~~~t~~~lA~~l--G~sr~tvsR~l~~L~~~g~I~~------~~~~i~~i~ 204 (222)
T 1ft9_A 133 HDIKQRIAGFFIDHANTTGRQTQGGVIVSVDFTVEEIANLI--GSSRQTTSTALNSLIKEGYISR------QGRGHYTIP 204 (222)
T ss_dssp HHHHHHHHHHHHHTCBCCCSCC--CCCCEECCCHHHHHHHH--CSCHHHHHHHHHHHHHTTSSEE------CSTTCEECS
T ss_pred CCHHHHHHHHHHHHHHHhCCCCCCcEEEeccCCHHHHHHHh--CCcHHHHHHHHHHHHHCCcEEE------cCCceEEEc
Confidence 3456766666666553333 7899999999 9999999999999999999975 344545444
Q ss_pred cc
Q 026766 84 EF 85 (233)
Q Consensus 84 ~l 85 (233)
|.
T Consensus 205 d~ 206 (222)
T 1ft9_A 205 NL 206 (222)
T ss_dssp SH
T ss_pred CH
Confidence 43
No 163
>3kcc_A Catabolite gene activator; helix-turn-helix, CAMP, CAMP-binding, DNA-binding nucleotide-binding, transcription, transcription regulation; HET: CMP; 1.66A {Escherichia coli}
Probab=94.74 E-value=0.11 Score=43.71 Aligned_cols=59 Identities=17% Similarity=0.264 Sum_probs=44.9
Q ss_pred CChHHHHHHHHHHhhCCC-----------cccHHHHHHHhhcCCChHHHHHHHHHHHhCCCceeeecccCCCeeeEEe
Q 026766 16 LTDHERLIYDVIRSKQDM-----------GIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVVNIHSKGKKHLMA 82 (233)
Q Consensus 16 L~~~e~lVy~~I~~aG~~-----------GIw~~dik~~t~~~l~~~~v~k~LK~Le~k~lIK~vksV~~~~rK~Yml 82 (233)
.+..+++..-+++-+... -+.+.+|..-+ |++..+|+|+|+.|+++|+|+. .++++.++
T Consensus 188 ~~~~~Rla~~Ll~l~~~~~~~~~~~~~~l~lt~~~lA~~l--G~sr~tvsR~l~~L~~~GlI~~------~~~~i~I~ 257 (260)
T 3kcc_A 188 LLVTGRIAQTLLNLAKQPDAMTHPDGMQIKITRQEIGQIV--GCSRETVGRILKMLEDQNLISA------HGKTIVVY 257 (260)
T ss_dssp CCHHHHHHHHHHHHHTSTTCEEETTEEEEECCHHHHHHHH--TCCHHHHHHHHHHHHHTTSEEE------CSSEEEEC
T ss_pred CCHHHHHHHHHHHHHHhcCCCCCCCceeecCCHHHHHHHh--CCCHHHHHHHHHHHHHCCCEEE------cCCEEEEE
Confidence 456777766666544332 25789999999 9999999999999999999975 34566553
No 164
>1jhf_A LEXA repressor; LEXA SOS repressor, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.2 b.87.1.1 PDB: 1jhh_A 3jso_A* 3jsp_A* 3k3r_E* 1jhc_A 1jhe_A 1lea_A 1leb_A
Probab=94.61 E-value=0.051 Score=44.64 Aligned_cols=55 Identities=24% Similarity=0.457 Sum_probs=47.6
Q ss_pred CCCCChHHHHHHHHHHhh-CCCcc--cHHHHHHHhhcCCC-hHHHHHHHHHHHhCCCceee
Q 026766 13 SDSLTDHERLIYDVIRSK-QDMGI--WTRDMKRELRVNLP-DNIVTKSIKSLQNKSLIKEV 69 (233)
Q Consensus 13 ~~~L~~~e~lVy~~I~~a-G~~GI--w~~dik~~t~~~l~-~~~v~k~LK~Le~k~lIK~v 69 (233)
|+.||+.|+.+++.|.++ ...|+ .+++|.+++ |+. ++++++.++.|+++++|..-
T Consensus 1 m~~lt~~q~~i~~~i~~~~~~~g~~ps~~elA~~l--giss~~tv~~~~~~l~~~~~l~~~ 59 (202)
T 1jhf_A 1 MKALTARQQEVFDLIRDHISQTGMPPTRAEIAQRL--GFRSPNAAEEHLKALARKGVIEIV 59 (202)
T ss_dssp -CCCCHHHHHHHHHHHHHHHHHSSCCCHHHHHHHT--TCSSHHHHHHHHHHHHHTTSEEEC
T ss_pred CCccCHHHHHHHHHHHHHHHHhCCCccHHHHHHHh--CCCChHHHHHHHHHHHHCCCceeC
Confidence 357999999999999876 45588 999999999 999 89999999999999988753
No 165
>2k02_A Ferrous iron transport protein C; FEOC, iron-sulfur, metal-binding, metal binding protein; NMR {Klebsiella pneumoniae subsp}
Probab=94.51 E-value=0.095 Score=38.90 Aligned_cols=46 Identities=4% Similarity=0.114 Sum_probs=35.3
Q ss_pred HHHHHHhhhCCCCCHHHHHHHHHHhCCcccccCHHHHHHHHHHHhcCCeEEEEe
Q 026766 112 SQCLKQIIKLKVATLEGISDSIKRSGAFKVDLTKQQIEEIVRALVLDNQIMEVK 165 (233)
Q Consensus 112 ~~~~~~i~~~~~~T~~~I~~~I~~~~i~~~~Ls~~di~~il~~Lv~Dg~ie~v~ 165 (233)
+.++++|++++.+|++|+++.+ .+|+.-|+..|+.|+-.|+|.+++
T Consensus 5 ~~Il~~L~~~g~vsv~eLA~~l--------~VS~~TIRrDL~~Le~~G~l~R~~ 50 (87)
T 2k02_A 5 MEVRDMLALQGRMEAKQLSARL--------QTPQPLIDAMLERMEAMGKVVRIS 50 (87)
T ss_dssp HHHHHHHHHSCSEEHHHHHHHT--------TCCHHHHHHHHHHHHTTCCSEEEE
T ss_pred HHHHHHHHHcCCCcHHHHHHHH--------CcCHHHHHHHHHHHHHCCCEEEEe
Confidence 3456666666666666666544 478899999999999999999986
No 166
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=94.40 E-value=0.15 Score=39.80 Aligned_cols=66 Identities=12% Similarity=0.091 Sum_probs=52.9
Q ss_pred CCChHHHHHHHHHHhhCCCcccHHHHHHHhh---cCCChHHHHHHHHHHHhCCCceeeecccCCCeeeEEe
Q 026766 15 SLTDHERLIYDVIRSKQDMGIWTRDMKRELR---VNLPDNIVTKSIKSLQNKSLIKEVVNIHSKGKKHLMA 82 (233)
Q Consensus 15 ~L~~~e~lVy~~I~~aG~~GIw~~dik~~t~---~~l~~~~v~k~LK~Le~k~lIK~vksV~~~~rK~Yml 82 (233)
.+|+.-..|++++.+++..-+...+|-..++ ++++..+|.|.|+.|++.|+|.++..-. +...|-+
T Consensus 15 r~T~qR~~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~~~~~~~--~~~~Y~~ 83 (136)
T 1mzb_A 15 KVTLPRVKILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAGLVVRHNFDG--GHAVFEL 83 (136)
T ss_dssp CCCHHHHHHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSEEEECSSS--SSCEEEE
T ss_pred CCCHHHHHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCcEEEEEeCC--CceEEEe
Confidence 5788999999999976535689999988873 4799999999999999999999876544 3445644
No 167
>3lwf_A LIN1550 protein, putative transcriptional regulator; structural genomics, JOI for structural genomics, JCSG; HET: SO4; 2.06A {Listeria innocua}
Probab=94.38 E-value=0.16 Score=41.25 Aligned_cols=61 Identities=18% Similarity=0.286 Sum_probs=46.1
Q ss_pred HHHHhh-CCCcccHHHHHHHhhcCCChHHHHHHHHHHHhCCCceeeecccCCCeeeEEeeccccCCCccc
Q 026766 25 DVIRSK-QDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVVNIHSKGKKHLMAVEFEPSKEISG 93 (233)
Q Consensus 25 ~~I~~a-G~~GIw~~dik~~t~~~l~~~~v~k~LK~Le~k~lIK~vksV~~~~rK~Yml~~lePs~eiTG 93 (233)
-.|... ++.-+..++|..+. +++.+.|.|+|..|.+.|||.+++-.+- =|.|+ .|.++||=
T Consensus 34 ~~LA~~~~~~~~s~~eIA~~~--~i~~~~l~kil~~L~~aGlv~s~rG~~G----Gy~La--r~p~eItL 95 (159)
T 3lwf_A 34 LELAKRIGDGPISLRSIAQDK--NLSEHYLEQLIGPLRNAGIVKSIRGAHG----GYVLN--GDPEKITA 95 (159)
T ss_dssp HHHHHTTTSCCBCHHHHHHHH--TCCHHHHHHHHHHHHHTTSEEEECSTTC----EEEEC--SCTTTCBH
T ss_pred HHHHhcCCCCCcCHHHHHHHH--CcCHHHHHHHHHHHHHCCeEEEecCCCC----ceEec--CCHHHCCH
Confidence 334433 34458999999999 9999999999999999999988755432 37665 46667663
No 168
>1k78_A Paired box protein PAX5; paired domain, ETS domain, transcription factor, transcription/DNA complex; 2.25A {Homo sapiens} SCOP: a.4.1.5 a.4.1.5 PDB: 1mdm_A 6pax_A
Probab=94.24 E-value=1.4 Score=33.88 Aligned_cols=108 Identities=17% Similarity=0.204 Sum_probs=70.7
Q ss_pred CCCChHHHHHHHHHHhhCCCcccHHHHHHHhhcCCChHHHHHHHHHHHhCCCceeeecccCCCeeeEEeeccccCCCccc
Q 026766 14 DSLTDHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVVNIHSKGKKHLMAVEFEPSKEISG 93 (233)
Q Consensus 14 ~~L~~~e~lVy~~I~~aG~~GIw~~dik~~t~~~l~~~~v~k~LK~Le~k~lIK~vksV~~~~rK~Yml~~lePs~eiTG 93 (233)
+.++.+++. .++... ..|...++|.+.+ +++.++|.+-++..++.|.... .| .+
T Consensus 31 ~~~s~e~r~--~iv~~~-~~G~s~~~iA~~l--gis~~TV~rw~~~~~~~G~~~~-----------------~~----r~ 84 (149)
T 1k78_A 31 RPLPDVVRQ--RIVELA-HQGVRPCDISRQL--RVSHGCVSKILGRYYETGSIKP-----------------GV----IG 84 (149)
T ss_dssp SCCCHHHHH--HHHHHH-HTTCCHHHHHHHH--TCCHHHHHHHHHHHHHHSCCCC-----------------CC----CC
T ss_pred CCCCHHHHH--HHHHHH-HcCCCHHHHHHHH--CcCHHHHHHHHHHHHHcCCCCc-----------------cC----CC
Confidence 457777653 233333 2578999999999 9999999999999988775321 00 11
Q ss_pred CCcccCCCCCHHHHHHHHHHHHHHhhhCCCCCHHHHHHHHHHhCCc--ccccCHHHHHHHHH
Q 026766 94 GAWYSEGSLDTEFIKVVKSQCLKQIIKLKVATLEGISDSIKRSGAF--KVDLTKQQIEEIVR 153 (233)
Q Consensus 94 G~wy~d~e~D~efI~~l~~~~~~~i~~~~~~T~~~I~~~I~~~~i~--~~~Ls~~di~~il~ 153 (233)
|. ....++.++.+.|. .++......|+.+|...+...++. .+.+|..-|..+|.
T Consensus 85 gr--~~~~~~~~~~~~I~----~~~~~~~~~s~~~i~~~l~~~~~~~~g~~~S~sTV~r~L~ 140 (149)
T 1k78_A 85 GS--KPKVATPKVVEKIA----EYKRQNPTMFAWEIRDRLLAERVCDNDTVPSVSSINRIIR 140 (149)
T ss_dssp CC--CCSSSCHHHHHHHH----HHHHHCTTCCHHHHHHHHHHTTSSCTTTSCCHHHHHHHHH
T ss_pred CC--CCCCCCHHHHHHHH----HHHHhCcchhHHHHHHHHHHhcccccCCCcCHHHHHHHHH
Confidence 20 12245666555544 444555678899999999776421 23578888877775
No 169
>2y75_A HTH-type transcriptional regulator CYMR; DNA binding protein; 2.00A {Bacillus subtilis}
Probab=94.15 E-value=0.11 Score=39.84 Aligned_cols=63 Identities=14% Similarity=0.174 Sum_probs=44.6
Q ss_pred HHHHHHHhh-CCCcccHHHHHHHhhcCCChHHHHHHHHHHHhCCCceeeecccCCCeeeEEeeccccCCCcc
Q 026766 22 LIYDVIRSK-QDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVVNIHSKGKKHLMAVEFEPSKEIS 92 (233)
Q Consensus 22 lVy~~I~~a-G~~GIw~~dik~~t~~~l~~~~v~k~LK~Le~k~lIK~vksV~~~~rK~Yml~~lePs~eiT 92 (233)
.|+.+|..+ ++..+..++|..++ +++.+.|.|+|+.|++.|+|.+.+.. ..-|.|. .|..+||
T Consensus 13 ~iL~~la~~~~~~~~s~~ela~~~--~i~~~~v~~il~~L~~~Glv~~~~g~----~ggy~L~--~~~~~it 76 (129)
T 2y75_A 13 TIMIELAKKHGEGPTSLKSIAQTN--NLSEHYLEQLVSPLRNAGLVKSIRGA----YGGYVLG--SEPDAIT 76 (129)
T ss_dssp HHHHHHHHTTTSCCBCHHHHHHHT--TSCHHHHHHHHHHHHHTTSEEEC--------CCEEES--SCGGGCB
T ss_pred HHHHHHHhCCCCCcCCHHHHHHHH--CcCHHHHHHHHHHHHHCCceEecCCC----CCceEeC--CCHHHCc
Confidence 445555554 35669999999999 99999999999999999999765421 1346654 2445555
No 170
>2zfw_A PEX; five alpha-helices + one beta-sheet, circadian clock protein; 2.90A {Synechococcus SP}
Probab=94.07 E-value=0.058 Score=43.56 Aligned_cols=60 Identities=13% Similarity=0.300 Sum_probs=42.5
Q ss_pred HHHHHHHhhCCCcccHHHHHHHh----hc-CCChHHHHHHHHHHHhCCCceeeeccc---CCCeeeEEeec
Q 026766 22 LIYDVIRSKQDMGIWTRDMKREL----RV-NLPDNIVTKSIKSLQNKSLIKEVVNIH---SKGKKHLMAVE 84 (233)
Q Consensus 22 lVy~~I~~aG~~GIw~~dik~~t----~~-~l~~~~v~k~LK~Le~k~lIK~vksV~---~~~rK~Yml~~ 84 (233)
+|+.+|.+.. ..--+|.+.+ +. +++..+|..+|++||++|||.+..... .+.||+|-|.+
T Consensus 48 ~IL~lL~~~p---~~GYeI~k~l~~~~~~~~is~gtLYp~L~rLE~~GlI~~~~~~~~~~g~~rk~Y~LT~ 115 (148)
T 2zfw_A 48 YVLAVLRHED---SYGTELIQHLETHWPNYRLSDTVLYTALKFLEDEQIISGYWKKVEGRGRPRRMYQLAQ 115 (148)
T ss_dssp HHHHHHTTCC---EEHHHHHHHHHHHCTTEECCSHHHHHHHHHHHHTSSEEEECCCCTTSSCCCCEEEESS
T ss_pred HHHHHHHhCC---CcHHHHHHHHHHHcCCCCCChhHHHHHHHHHHHCCCEEEEeeccCCCCCCcEEEEECH
Confidence 4788886533 4434444443 11 699999999999999999999876542 46788886654
No 171
>3dv8_A Transcriptional regulator, CRP/FNR family; cyclic nucleotide-binding domain, structural genomics, joint for structural genomics; 2.55A {Eubacterium rectale atcc 33656}
Probab=93.91 E-value=0.098 Score=42.04 Aligned_cols=51 Identities=14% Similarity=0.199 Sum_probs=40.4
Q ss_pred CChHHHHHHHHHHhhCC-----CcccHHHHHHHhhcCCChHHHHHHHHHHHhCCCcee
Q 026766 16 LTDHERLIYDVIRSKQD-----MGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKE 68 (233)
Q Consensus 16 L~~~e~lVy~~I~~aG~-----~GIw~~dik~~t~~~l~~~~v~k~LK~Le~k~lIK~ 68 (233)
.+..+++..-+++.+.. --+.+.+|..-+ |++..+|+|+|+.|+++|+|+.
T Consensus 146 ~~~~~Rl~~~L~~~~~~~~~~~~~~t~~~lA~~l--g~sr~tvsR~l~~L~~~g~I~~ 201 (220)
T 3dv8_A 146 KSLDKRVASFLLEETSIEGTNELKITHETIANHL--GSHREVITRMLRYFQVEGLVKL 201 (220)
T ss_dssp SCHHHHHHHHHHHHHHHHTSSEECCCHHHHHHHH--TCCHHHHHHHHHHHHHTTSEEE
T ss_pred CCHHHHHHHHHHHhhhhcCCceecCCHHHHHHHh--CCCHHHHHHHHHHHHHCCCEEe
Confidence 45566666655554432 248999999999 9999999999999999999964
No 172
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=93.90 E-value=0.26 Score=38.81 Aligned_cols=64 Identities=14% Similarity=0.203 Sum_probs=52.7
Q ss_pred CCChHHHHHHHHHHhhCCCcccHHHHHHHhh---cCCChHHHHHHHHHHHhCCCceeeecccCCCeeeEE
Q 026766 15 SLTDHERLIYDVIRSKQDMGIWTRDMKRELR---VNLPDNIVTKSIKSLQNKSLIKEVVNIHSKGKKHLM 81 (233)
Q Consensus 15 ~L~~~e~lVy~~I~~aG~~GIw~~dik~~t~---~~l~~~~v~k~LK~Le~k~lIK~vksV~~~~rK~Ym 81 (233)
.+|+.-..|++++.++ +.-+...+|-..++ ++++..+|.|.|+.|++.|||.++..-. +...|-
T Consensus 19 r~T~qR~~Il~~L~~~-~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~~~~~~~--~~~~Y~ 85 (145)
T 2fe3_A 19 RITPQRHAILEYLVNS-MAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESGLVKELTYGD--ASSRFD 85 (145)
T ss_dssp CCCHHHHHHHHHHHHC-SSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTSEEEECCTT--SCCEEE
T ss_pred CCCHHHHHHHHHHHhC-CCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCCCEEEEeeCC--CceEEE
Confidence 5788999999999875 44699999999883 3799999999999999999999887644 344564
No 173
>3e6c_C CPRK, cyclic nucleotide-binding protein; CPRK, halorespiration; HET: DNA 3C4; 1.80A {Desulfitobacterium hafniense} SCOP: a.4.5.4 b.82.3.2 PDB: 3e6b_A* 3e5u_C* 3e6d_A 3e5x_A* 3e5q_A 2h6b_A* 2h6c_A
Probab=93.82 E-value=0.13 Score=42.55 Aligned_cols=60 Identities=12% Similarity=0.198 Sum_probs=45.8
Q ss_pred CCChHHHHHHHHHHh---hC---------CCcccHHHHHHHhhcCCChHHHHHHHHHHHhCCCceeeecccCCCeeeEEe
Q 026766 15 SLTDHERLIYDVIRS---KQ---------DMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVVNIHSKGKKHLMA 82 (233)
Q Consensus 15 ~L~~~e~lVy~~I~~---aG---------~~GIw~~dik~~t~~~l~~~~v~k~LK~Le~k~lIK~vksV~~~~rK~Yml 82 (233)
..+.++++..-+++- .| .--+.+.+|..-+ |++..+|+|+|+.|+++|+|+. .++++.++
T Consensus 146 ~~~~~~Rl~~~L~~l~~~~~~~~~~~~~i~~~~t~~~iA~~l--G~sr~tvsR~l~~L~~~g~I~~------~~~~i~i~ 217 (250)
T 3e6c_C 146 TYNPTIRILRLFYELCSSQGKRVGDTYEITMPLSQKSIGEIT--GVHHVTVSRVLASLKRENILDK------KKNKIIVY 217 (250)
T ss_dssp TSCHHHHHHHHHHHHHHHHCEEETTEEEEECCCCHHHHHHHH--TCCHHHHHHHHHHHHHTTSEEE------CSSEEEES
T ss_pred cCCHHHHHHHHHHHHHHHhCCCCCCCcEecCCCCHHHHHHHh--CCcHHHHHHHHHHHHHCCCeEe------CCCEEEEe
Confidence 456677766555543 33 1246899999999 9999999999999999999976 35666665
No 174
>3d0s_A Transcriptional regulatory protein; CAMP receptor protein (CRP), dimer, inactive(APO, unliganded allostery, DNA binding, cyclic AMP; 2.00A {Mycobacterium tuberculosis} PDB: 3i54_A* 3i59_A* 3mzh_A* 3h3u_A* 3r6s_A*
Probab=93.79 E-value=0.094 Score=42.57 Aligned_cols=51 Identities=8% Similarity=0.150 Sum_probs=39.6
Q ss_pred CChHHHHHHHHHHhh---CC---C------cccHHHHHHHhhcCCChHHHHHHHHHHHhCCCcee
Q 026766 16 LTDHERLIYDVIRSK---QD---M------GIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKE 68 (233)
Q Consensus 16 L~~~e~lVy~~I~~a---G~---~------GIw~~dik~~t~~~l~~~~v~k~LK~Le~k~lIK~ 68 (233)
.+..+++..-+++-+ |. . -+.+.+|..-+ |++..+|+|+|+.|+++|+|+.
T Consensus 147 ~~~~~Rl~~~L~~l~~~~~~~~~~~~~i~~~~t~~~lA~~l--g~sr~tvsR~l~~l~~~g~I~~ 209 (227)
T 3d0s_A 147 TDVPGRVAKQLLQLAQRFGTQEGGALRVTHDLTQEEIAQLV--GASRETVNKALADFAHRGWIRL 209 (227)
T ss_dssp SCHHHHHHHHHHHHHHHHEEEETTEEEEECCCCHHHHHHHH--TSCHHHHHHHHHHHHHTTSEEE
T ss_pred CCHHHHHHHHHHHHHHHhCCcCCCceEEcCCCCHHHHHHHh--CCcHHHHHHHHHHHHHCCCEEe
Confidence 456676655454432 21 1 26899999999 9999999999999999999975
No 175
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=93.68 E-value=0.27 Score=39.08 Aligned_cols=66 Identities=12% Similarity=0.130 Sum_probs=53.2
Q ss_pred CCChHHHHHHHHHHhhCCCcccHHHHHHHhh---cCCChHHHHHHHHHHHhCCCceeeecccCCCeeeEEe
Q 026766 15 SLTDHERLIYDVIRSKQDMGIWTRDMKRELR---VNLPDNIVTKSIKSLQNKSLIKEVVNIHSKGKKHLMA 82 (233)
Q Consensus 15 ~L~~~e~lVy~~I~~aG~~GIw~~dik~~t~---~~l~~~~v~k~LK~Le~k~lIK~vksV~~~~rK~Yml 82 (233)
.+|+.-..|+.+|.+++..-+...+|-..++ +++...+|.|.|+.|++.|+|.++..-. +...|-+
T Consensus 14 r~T~qR~~Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~~~~~~~--~~~~Y~~ 82 (150)
T 2w57_A 14 KVTLPRLKILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAGIVTRHHFEG--GKSVFEL 82 (150)
T ss_dssp CCCHHHHHHHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSEEEEECGG--GCEEEEE
T ss_pred CCCHHHHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCcEEEEEeCC--CceEEEe
Confidence 5788999999999877535689999998873 4899999999999999999999886544 3445643
No 176
>3la7_A Global nitrogen regulator; activator, DNA-binding, transcription, transcription regulation; HET: BOG; 1.90A {Anabaena} PDB: 3la2_A* 3la3_A* 2xko_A* 2xgx_A* 2xhk_A* 2xkp_A*
Probab=93.63 E-value=0.11 Score=43.10 Aligned_cols=51 Identities=14% Similarity=0.151 Sum_probs=40.2
Q ss_pred CChHHHHHHHHHHhhC------C------CcccHHHHHHHhhcCCChHHHHHHHHHHHhCCCcee
Q 026766 16 LTDHERLIYDVIRSKQ------D------MGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKE 68 (233)
Q Consensus 16 L~~~e~lVy~~I~~aG------~------~GIw~~dik~~t~~~l~~~~v~k~LK~Le~k~lIK~ 68 (233)
.+.++++..-+++-+. . --+.+.+|..-+ |++..+|+|+|+.|+++|+|+.
T Consensus 163 ~~~~~Rla~~L~~l~~~~g~~~~~~~~i~~~lt~~~lA~~l--G~sr~tvsR~l~~L~~~GlI~~ 225 (243)
T 3la7_A 163 RDMGSRLVSFLLILCRDFGVPCADGITIDLKLSHQAIAEAI--GSTRVTVTRLLGDLREKKMISI 225 (243)
T ss_dssp SSHHHHHHHHHHHHHHHHEEECSSSEEECSCCCHHHHHHHH--TCCHHHHHHHHHHHHHTTSEEE
T ss_pred CCHHHHHHHHHHHHHHHhCCCCCCCeEEeccCCHHHHHHHH--CCcHHHHHHHHHHHHHCCCEEE
Confidence 4567776655554332 1 236899999999 9999999999999999999975
No 177
>2fmy_A COOA, carbon monoxide oxidation system transcription RE COOA-1; DNA transcription regulator, DNA binding protein; HET: HEM; 2.20A {Carboxydothermus hydrogenoformans} PDB: 2hkx_A*
Probab=93.61 E-value=0.1 Score=42.19 Aligned_cols=50 Identities=12% Similarity=0.209 Sum_probs=39.3
Q ss_pred ChHHHHHHHHHHhh---CC---------CcccHHHHHHHhhcCCChHHHHHHHHHHHhCCCcee
Q 026766 17 TDHERLIYDVIRSK---QD---------MGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKE 68 (233)
Q Consensus 17 ~~~e~lVy~~I~~a---G~---------~GIw~~dik~~t~~~l~~~~v~k~LK~Le~k~lIK~ 68 (233)
+.++++..-+++.+ |. -.+.+.+|..-+ |++..+|+|+|+.|+++|+|+.
T Consensus 138 ~~~~Rl~~~L~~l~~~~g~~~~~~~~~~~~~t~~~lA~~l--g~sr~tvsR~l~~l~~~g~I~~ 199 (220)
T 2fmy_A 138 DARLRLAEFLVQAAMDTGLKVPQGIKLELGLNTEEIALML--GTTRQTVSVLLNDFKKMGILER 199 (220)
T ss_dssp HHHHHHHHHHHHHHHHHCEEETTEEEEECSSCHHHHHHHH--TSCHHHHHHHHHHHHHTTSEEE
T ss_pred CHHHHHHHHHHHHHHHhCCCCCCcEEEeccCCHHHHHHHh--CCcHHHHHHHHHHHHHCCCEEE
Confidence 45666655554433 21 247899999999 9999999999999999999975
No 178
>3u5c_Z RP45, S31, YS23, 40S ribosomal protein S25-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_V 3o30_Q 3o2z_Q 3u5g_Z
Probab=93.56 E-value=0.074 Score=41.23 Aligned_cols=74 Identities=15% Similarity=0.167 Sum_probs=48.8
Q ss_pred CCCCCCCCCCCCCCCChHHHHHHHHHH--hhCCCcccHHHHHHHhhcCCChHHHHHHHHHHHhCCCceeeecccCCCeee
Q 026766 2 SKRKRPDSNAPSDSLTDHERLIYDVIR--SKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVVNIHSKGKKH 79 (233)
Q Consensus 2 ~~~~~~~~~~~~~~L~~~e~lVy~~I~--~aG~~GIw~~dik~~t~~~l~~~~v~k~LK~Le~k~lIK~vksV~~~~rK~ 79 (233)
||-|..|...-.--++ .-.|+-|. --..+=|+...|..++ ++.-+.-+++|+.|+++|+|+.|. +|.+..+
T Consensus 28 sKgk~kdK~nn~VlfD---k~t~dkl~KEVpk~KlITpsvlseRl--kI~gSLAR~aLreL~~kGlIk~V~--kh~~q~I 100 (108)
T 3u5c_Z 28 SKKSMKDRAQHAVILD---QEKYDRILKEVPTYRYVSVSVLVDRL--KIGGSLARIALRHLEKEGIIKPIS--KHSKQAI 100 (108)
T ss_dssp --------CCSCSSCT---THHHHHHHHHCSSCSSBSHHHHHHTT--CCCTTHHHHHHHHHSSSSSCEEEE--CCSSCCE
T ss_pred ccccHHHHhhcceeeC---HHHHHHHHHHccCCeEEeHHHhhhhh--hhhHHHHHHHHHHHHHCCCEEEEe--cCCCEEE
Confidence 3444444433333333 34454443 2334569999999999 999999999999999999999984 6678889
Q ss_pred EEe
Q 026766 80 LMA 82 (233)
Q Consensus 80 Yml 82 (233)
|--
T Consensus 101 YTr 103 (108)
T 3u5c_Z 101 YTR 103 (108)
T ss_dssp EEC
T ss_pred Eec
Confidence 953
No 179
>4ham_A LMO2241 protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, winged helix-turn-helix, four helix bundle; 1.91A {Listeria monocytogenes}
Probab=93.51 E-value=0.98 Score=34.84 Aligned_cols=53 Identities=25% Similarity=0.365 Sum_probs=40.2
Q ss_pred HHHHHHHhhCC-------Ccc-cHHHHHHHhhcCCChHHHHHHHHHHHhCCCceeeecccCCCeeeEE
Q 026766 22 LIYDVIRSKQD-------MGI-WTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVVNIHSKGKKHLM 81 (233)
Q Consensus 22 lVy~~I~~aG~-------~GI-w~~dik~~t~~~l~~~~v~k~LK~Le~k~lIK~vksV~~~~rK~Ym 81 (233)
.||+.|...=. .=+ ..++|..+. ++..++|+++|+.|+..|||... +++-+|+
T Consensus 18 QI~~~i~~~I~~G~l~pG~~LPser~La~~~--gVSr~tVReAl~~L~~eGlv~~~-----~g~G~~V 78 (134)
T 4ham_A 18 QIVQKIKEQVVKGVLQEGEKILSIREFASRI--GVNPNTVSKAYQELERQEVIITV-----KGKGTFI 78 (134)
T ss_dssp HHHHHHHHHHHHTSSCTTCEECCHHHHHHHH--TCCHHHHHHHHHHHHHTTSEEEE-----TTTEEEE
T ss_pred HHHHHHHHHHHcCCCCCCCCCccHHHHHHHH--CCCHHHHHHHHHHHHHCCcEEEE-----cCcEEEE
Confidence 56777765311 124 678999999 99999999999999999999764 3455555
No 180
>2gau_A Transcriptional regulator, CRP/FNR family; structural genomics, porphyromona gingivalis, PSI, protein structure initiative; 1.90A {Porphyromonas gingivalis} SCOP: a.4.5.4 b.82.3.2
Probab=93.48 E-value=0.22 Score=40.49 Aligned_cols=51 Identities=6% Similarity=0.081 Sum_probs=40.5
Q ss_pred CChHHHHHHHHHH---hhC--------CCcccHHHHHHHhhcCCChHHHHHHHHHHHhCCCcee
Q 026766 16 LTDHERLIYDVIR---SKQ--------DMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKE 68 (233)
Q Consensus 16 L~~~e~lVy~~I~---~aG--------~~GIw~~dik~~t~~~l~~~~v~k~LK~Le~k~lIK~ 68 (233)
.+..+++..-+++ ..| .--+.+++|..-+ |++..+|+|+|+.|+++|+|+.
T Consensus 151 ~~~~~Rl~~~L~~l~~~~~~~~~~~~~~~~~t~~~lA~~l--g~sr~tvsR~l~~l~~~g~I~~ 212 (232)
T 2gau_A 151 KHVRGRLAETLLILKENFGFENDGATLSIYLSREELATLS--NMTVSNAIRTLSTFVSERMLAL 212 (232)
T ss_dssp SCHHHHHHHHHHHHHHHHCBCTTSSBBSCCCCHHHHHHHT--TSCHHHHHHHHHHHHHTTSEEE
T ss_pred CCHHHHHHHHHHHHHHHcCCCCCCcEEEcccCHHHHHHHh--CCCHHHHHHHHHHHHHCCCEee
Confidence 4567776655544 333 1347899999999 9999999999999999999975
No 181
>1mkm_A ICLR transcriptional regulator; structural genomics, winged helix-turn-helix, PSI, protein structure initiative; 2.20A {Thermotoga maritima} SCOP: a.4.5.33 d.110.2.2
Probab=93.48 E-value=0.15 Score=43.36 Aligned_cols=45 Identities=16% Similarity=0.200 Sum_probs=38.6
Q ss_pred HHHHHHHhhCCCcccHHHHHHHhhcCCChHHHHHHHHHHHhCCCceee
Q 026766 22 LIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEV 69 (233)
Q Consensus 22 lVy~~I~~aG~~GIw~~dik~~t~~~l~~~~v~k~LK~Le~k~lIK~v 69 (233)
.|+.++.+.+ .++...||.+++ +|+.+++.|.|+.|++.|+|...
T Consensus 12 ~iL~~l~~~~-~~~~~~ela~~~--gl~~stv~r~l~~L~~~G~v~~~ 56 (249)
T 1mkm_A 12 EILDFIVKNP-GDVSVSEIAEKF--NMSVSNAYKYMVVLEEKGFVLRK 56 (249)
T ss_dssp HHHHHHHHCS-SCBCHHHHHHHT--TCCHHHHHHHHHHHHHTTSEEEC
T ss_pred HHHHHHHhCC-CCCCHHHHHHHH--CcCHHHHHHHHHHHHHCCcEEEC
Confidence 4666666543 479999999999 99999999999999999999764
No 182
>3iz6_V 40S ribosomal protein S25 (S25E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=93.44 E-value=0.038 Score=42.89 Aligned_cols=46 Identities=15% Similarity=0.206 Sum_probs=41.0
Q ss_pred CcccHHHHHHHhhcCCChHHHHHHHHHHHhCCCceeeecccCCCeeeEEe
Q 026766 33 MGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVVNIHSKGKKHLMA 82 (233)
Q Consensus 33 ~GIw~~dik~~t~~~l~~~~v~k~LK~Le~k~lIK~vksV~~~~rK~Yml 82 (233)
+=|+...|..++ ++.-+.-+++|+.|+++|+|+.| ++|.+..+|--
T Consensus 59 KlITpsvlseRl--kI~gSLAR~aLreL~~kGlIk~V--~kh~~q~IYTr 104 (108)
T 3iz6_V 59 KQITPSVLSERL--RINGSLARQAIKDLESRGAIRVV--SVHSSQLIYTR 104 (108)
T ss_dssp SSEEEHHHHHHH--HTCCHHHHHHHHHHHHHHTSCEE--CCCTTSCCEEE
T ss_pred eEEeHHHHHhhh--cccHHHHHHHHHHHHHCCCEEEE--ecCCCEEEEec
Confidence 458999999999 99999999999999999999998 46778889953
No 183
>2xrn_A HTH-type transcriptional regulator TTGV; DNA-binding protein, tetramer gene regulator, cooperative DN binding, multidrug binding protein; 2.90A {Pseudomonas putida} PDB: 2xro_A
Probab=93.44 E-value=0.15 Score=43.38 Aligned_cols=45 Identities=20% Similarity=0.360 Sum_probs=38.2
Q ss_pred HHHHHHHhhCCCcccHHHHHHHhhcCCChHHHHHHHHHHHhCCCceee
Q 026766 22 LIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEV 69 (233)
Q Consensus 22 lVy~~I~~aG~~GIw~~dik~~t~~~l~~~~v~k~LK~Le~k~lIK~v 69 (233)
.|+.++.+.+ .++...+|.+++ +|+.+++.|.|+.|++.|+|...
T Consensus 10 ~iL~~l~~~~-~~~s~~ela~~~--gl~~stv~r~l~~L~~~G~v~~~ 54 (241)
T 2xrn_A 10 SIMRALGSHP-HGLSLAAIAQLV--GLPRSTVQRIINALEEEFLVEAL 54 (241)
T ss_dssp HHHHHHHTCT-TCEEHHHHHHHT--TSCHHHHHHHHHHHHTTTSEEEC
T ss_pred HHHHHHHhCC-CCCCHHHHHHHH--CcCHHHHHHHHHHHHHCCCEEEe
Confidence 3556665443 479999999999 99999999999999999999774
No 184
>2k27_A Paired box protein PAX-8; paired domain, solution structure, triple frequency, 3D NMR, induced FIT, alternative splicing, developmental protein; NMR {Homo sapiens}
Probab=93.41 E-value=0.84 Score=35.74 Aligned_cols=113 Identities=16% Similarity=0.191 Sum_probs=72.7
Q ss_pred CCCChHHHHHHHHHHhhCCCcccHHHHHHHhhcCCChHHHHHHHHHHHhCCCceeeecccCCCeeeEEeeccccCCCccc
Q 026766 14 DSLTDHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVVNIHSKGKKHLMAVEFEPSKEISG 93 (233)
Q Consensus 14 ~~L~~~e~lVy~~I~~aG~~GIw~~dik~~t~~~l~~~~v~k~LK~Le~k~lIK~vksV~~~~rK~Yml~~lePs~eiTG 93 (233)
+.++.+++.- ++... ..|...++|.+.+ +++.++|.+-++..++.|.... .| .+
T Consensus 24 ~~~s~e~r~~--ii~l~-~~G~s~~~IA~~l--gis~~TV~rwl~r~~~~G~~~~-----------------~~----r~ 77 (159)
T 2k27_A 24 RPLPEVVRQR--IVDLA-HQGVRPCDISRQL--RVSHGCVSKILGRYYETGSIRP-----------------GV----IG 77 (159)
T ss_dssp CSSCHHHHHH--HHHHH-HHTCCHHHHHHHH--TCCSHHHHHHHCCSSTTSCCCC-----------------CC----CC
T ss_pred CCCCHHHHHH--HHHHH-HcCCCHHHHHHHH--CcCHHHHHHHHHHHHhcCCccC-----------------CC----CC
Confidence 3567766532 22222 2578999999999 9999999999998776665321 00 02
Q ss_pred CCcccCCCCCHHHHHHHHHHHHHHhhhCCCCCHHHHHHHHHHhCCc--ccccCHHHHHHHHHHHhcC
Q 026766 94 GAWYSEGSLDTEFIKVVKSQCLKQIIKLKVATLEGISDSIKRSGAF--KVDLTKQQIEEIVRALVLD 158 (233)
Q Consensus 94 G~wy~d~e~D~efI~~l~~~~~~~i~~~~~~T~~~I~~~I~~~~i~--~~~Ls~~di~~il~~Lv~D 158 (233)
|. ....++.++.+.| ..++......|+.+|.+.+.+.++. .+.+|..-|..+|....-.
T Consensus 78 gr--~~~~~~~~~~~~I----~~~~~~~~~~s~~~i~~~l~~~~~~~~~~~~S~sTV~r~L~~~~~~ 138 (159)
T 2k27_A 78 GS--KPKVATPKVVEKI----GDYKRQNPTMFAWEIRDRLLAEGVCDNDTVPSVSSINRIIRTKVQQ 138 (159)
T ss_dssp CC--CCCCCCTTHHHHH----HHHHHHCSSSCHHHHHHHHHHHTCSCTTTSCCHHHHHHHHHHHSCC
T ss_pred CC--CCCCCCHHHHHHH----HHHHHHCccchHHHHHHHHHHhcccccCCccCHHHHHHHHHHHhCC
Confidence 20 0123344444443 3444556678999999999877642 2468999999999876543
No 185
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=93.32 E-value=0.3 Score=38.77 Aligned_cols=64 Identities=9% Similarity=0.151 Sum_probs=51.9
Q ss_pred CCChHHHHHHHHHHhhCCCcccHHHHHHHhh---cCCChHHHHHHHHHHHhCCCceeeecccCCCeeeEE
Q 026766 15 SLTDHERLIYDVIRSKQDMGIWTRDMKRELR---VNLPDNIVTKSIKSLQNKSLIKEVVNIHSKGKKHLM 81 (233)
Q Consensus 15 ~L~~~e~lVy~~I~~aG~~GIw~~dik~~t~---~~l~~~~v~k~LK~Le~k~lIK~vksV~~~~rK~Ym 81 (233)
.+|+.-..|++++.+++. -+...+|-..++ ++++..+|-|.|+.|++.|+|.++..-. +...|-
T Consensus 24 r~T~qR~~IL~~l~~~~~-~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~~~~~~~--~~~~Y~ 90 (150)
T 2xig_A 24 KNSKQREEVVSVLYRSGT-HLSPEEITHSIRQKDKNTSISSVYRILNFLEKENFISVLETSK--SGRRYE 90 (150)
T ss_dssp -CHHHHHHHHHHHHHCSS-CBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTTSEEEEEETT--TEEEEE
T ss_pred CCCHHHHHHHHHHHhCCC-CCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCcEEEEEeCC--CceEEE
Confidence 467888899999988743 789999988873 4899999999999999999999887655 445564
No 186
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=93.29 E-value=0.25 Score=39.09 Aligned_cols=64 Identities=17% Similarity=0.244 Sum_probs=52.4
Q ss_pred CCCChHHHHHHHHHHhhCCCcccHHHHHHHhh---cCCChHHHHHHHHHHHhCCCceeeecccCCCeeeEE
Q 026766 14 DSLTDHERLIYDVIRSKQDMGIWTRDMKRELR---VNLPDNIVTKSIKSLQNKSLIKEVVNIHSKGKKHLM 81 (233)
Q Consensus 14 ~~L~~~e~lVy~~I~~aG~~GIw~~dik~~t~---~~l~~~~v~k~LK~Le~k~lIK~vksV~~~~rK~Ym 81 (233)
-.+|+.-+.|++++.+++ -+...+|-.+++ +++...+|-|.|+.|++.|+|.++..-. +...|-
T Consensus 15 ~r~T~qR~~Il~~l~~~~--h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Glv~~i~~~~--~~~~Y~ 81 (145)
T 3eyy_A 15 YRLTPQRQLVLEAVDTLE--HATPDDILGEVRKTASGINISTVYRTLELLEELGLVSHAHLGH--GAPTYH 81 (145)
T ss_dssp CCCCHHHHHHHHHHHHHS--SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHTSEEEEECGG--GCEEEE
T ss_pred CCcCHHHHHHHHHHHhcC--CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCCcEEEEEeCC--CceEEE
Confidence 357888899999999886 699999988773 3789999999999999999999987644 334453
No 187
>4ev0_A Transcription regulator, CRP family; CAMP binding, winged helix-turn-helix motif, DNA binding, transcription activator; HET: CMP; 2.40A {Thermus thermophilus}
Probab=93.21 E-value=0.16 Score=40.71 Aligned_cols=50 Identities=10% Similarity=0.254 Sum_probs=38.4
Q ss_pred ChHHHHHHHHHHhh--C---CCcccHHHHHHHhhcCCChHHHHHHHHHHHhCCCcee
Q 026766 17 TDHERLIYDVIRSK--Q---DMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKE 68 (233)
Q Consensus 17 ~~~e~lVy~~I~~a--G---~~GIw~~dik~~t~~~l~~~~v~k~LK~Le~k~lIK~ 68 (233)
+..+++..-+++-+ | .--+.+++|..-+ |++..+|+|+|+.|+++|+|+.
T Consensus 141 ~~~~Rl~~~L~~~~~~~~~~~~~~t~~~lA~~l--g~sr~tvsR~l~~l~~~g~I~~ 195 (216)
T 4ev0_A 141 EARNRVAYALLKLLRQGLGPLFQIRHHELAALA--GTSRETVSRVLHALAEEGVVRL 195 (216)
T ss_dssp HHHHHHHHHHHHHHHTTCCSEEECCHHHHHHHH--TSCHHHHHHHHHHHHHTTSEEE
T ss_pred CHHHHHHHHHHHHhhcCCccCCCCCHHHHHHHh--CCCHHHHHHHHHHHHHCCCEEe
Confidence 34555555554432 2 2336899999999 9999999999999999999974
No 188
>3e97_A Transcriptional regulator, CRP/FNR family; YP_604437.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.86A {Deinococcus geothermalis dsm 11300}
Probab=93.19 E-value=0.13 Score=41.77 Aligned_cols=32 Identities=16% Similarity=0.319 Sum_probs=30.5
Q ss_pred ccHHHHHHHhhcCCChHHHHHHHHHHHhCCCcee
Q 026766 35 IWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKE 68 (233)
Q Consensus 35 Iw~~dik~~t~~~l~~~~v~k~LK~Le~k~lIK~ 68 (233)
+.+++|..-+ |++..+|+|+|+.|+++|+|+.
T Consensus 176 ~t~~~iA~~l--g~sr~tvsR~l~~L~~~g~I~~ 207 (231)
T 3e97_A 176 LGTQDIMART--SSSRETVSRVLKRLEAHNILEV 207 (231)
T ss_dssp CCHHHHHHHH--TCCHHHHHHHHHHHHHTTSEEE
T ss_pred CCHHHHHHHh--CCcHHHHHHHHHHHHHCCcEEe
Confidence 6899999999 9999999999999999999975
No 189
>1pdn_C Protein (PRD paired); protein-DNA complex, double helix, PAX, paired domain, DNA-binding protein, gene regulation/DNA complex; HET: DNA; 2.50A {Drosophila melanogaster} SCOP: a.4.1.5
Probab=93.02 E-value=1.2 Score=32.44 Aligned_cols=107 Identities=19% Similarity=0.200 Sum_probs=67.5
Q ss_pred CCChHHHHHHHHHHhhCCCcccHHHHHHHhhcCCChHHHHHHHHHHHhCCCceeeecccCCCeeeEEeeccccCCCcccC
Q 026766 15 SLTDHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVVNIHSKGKKHLMAVEFEPSKEISGG 94 (233)
Q Consensus 15 ~L~~~e~lVy~~I~~aG~~GIw~~dik~~t~~~l~~~~v~k~LK~Le~k~lIK~vksV~~~~rK~Yml~~lePs~eiTGG 94 (233)
.++.+++.- ++... ..|...++|.+.+ +++.++|.+.++...+.|....- | .+|
T Consensus 17 ~~s~~~r~~--i~~~~-~~g~s~~~ia~~l--gis~~Tv~~w~~~~~~~g~~~~~-----------------~----~~g 70 (128)
T 1pdn_C 17 PLPNNIRLK--IVEMA-ADGIRPCVISRQL--RVSHGCVSKILNRYQETGSIRPG-----------------V----IGG 70 (128)
T ss_dssp CCCHHHHHH--HHHHH-HTTCCHHHHHHHH--TCCHHHHHHHHHHHHHHCCSSCC-----------------C----CSC
T ss_pred cCCHHHHHH--HHHHH-HcCCCHHHHHHHH--CcCHHHHHHHHHHHHhhCCcccc-----------------c----CCC
Confidence 577766532 23322 2578999999999 99999999999999887753210 0 011
Q ss_pred CcccCCCCCHHHHHHHHHHHHHHhhhCCCCCHHHHHHHHHHhCCc--ccccCHHHHHHHHH
Q 026766 95 AWYSEGSLDTEFIKVVKSQCLKQIIKLKVATLEGISDSIKRSGAF--KVDLTKQQIEEIVR 153 (233)
Q Consensus 95 ~wy~d~e~D~efI~~l~~~~~~~i~~~~~~T~~~I~~~I~~~~i~--~~~Ls~~di~~il~ 153 (233)
. ....++.++.+ .+..++...+..|+.+|...+.+.|+. ....|..-|..+|.
T Consensus 71 ~--~~~~l~~~~~~----~i~~~~~~~~~~s~~~i~~~l~~~g~~~~~~~~s~~tv~r~l~ 125 (128)
T 1pdn_C 71 S--KPRIATPEIEN----RIEEYKRSSPGMFSWEIREKLIREGVCDRSTAPSVSAISRLVR 125 (128)
T ss_dssp C--CCCSSCSTHHH----HHHHTTTTCTTCCHHHHHHHHHHTSSSCSTTCCCHHHHHHHC-
T ss_pred C--CCCcCCHHHHH----HHHHHHHhCcchHHHHHHHHHHHcCCccccCCcCHHHHHHHHH
Confidence 0 01233433333 344555566678999999999877752 11467777776664
No 190
>3ulq_B Transcriptional regulatory protein COMA; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} PDB: 2krf_A
Probab=92.98 E-value=0.22 Score=36.45 Aligned_cols=47 Identities=28% Similarity=0.388 Sum_probs=38.9
Q ss_pred CCCCCCChHHHHHHHHHHhhCCCcccHHHHHHHhhcCCChHHHHHHHHHHHhC
Q 026766 11 APSDSLTDHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNK 63 (233)
Q Consensus 11 ~~~~~L~~~e~lVy~~I~~aG~~GIw~~dik~~t~~~l~~~~v~k~LK~Le~k 63 (233)
.....||+.|+.|+.++. .|...++|...+ +++.++|...++.+-.|
T Consensus 25 ~~~~~Lt~rE~~Vl~l~~----~G~s~~eIA~~L--~iS~~TV~~~~~~i~~K 71 (90)
T 3ulq_B 25 KEQDVLTPRECLILQEVE----KGFTNQEIADAL--HLSKRSIEYSLTSIFNK 71 (90)
T ss_dssp ----CCCHHHHHHHHHHH----TTCCHHHHHHHH--TCCHHHHHHHHHHHHHH
T ss_pred ccccCCCHHHHHHHHHHH----cCCCHHHHHHHH--CcCHHHHHHHHHHHHHH
Confidence 356789999999999986 689999999999 99999999999887653
No 191
>2p8t_A Hypothetical protein PH0730; pyrococcus horikoshii OT3, STR genomics, PSI, protein structure initiative; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.72 d.74.4.2
Probab=92.93 E-value=0.19 Score=42.68 Aligned_cols=52 Identities=13% Similarity=0.130 Sum_probs=39.4
Q ss_pred CChHHHHHHHHHHhhCCCcccHHHHHHHhhcCCChHHHHHHHHHHHhCCCceeee
Q 026766 16 LTDHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVV 70 (233)
Q Consensus 16 L~~~e~lVy~~I~~aG~~GIw~~dik~~t~~~l~~~~v~k~LK~Le~k~lIK~vk 70 (233)
++....-.+.+|... +..+-+++|.+++ ++..++|+..||.|+++|||..-+
T Consensus 13 ls~s~EdYLk~I~~L-~~~V~~~~LA~~L--gvS~~SV~~~lkkL~e~GLV~~~~ 64 (200)
T 2p8t_A 13 PEYTVEDVLAVIFLL-KEPLGRKQISERL--ELGEGSVRTLLRKLSHLDIIRSKQ 64 (200)
T ss_dssp -CCCHHHHHHHHHHT-TSCBCHHHHHHHH--TCCHHHHHHHHHHHHHTTSEEEC-
T ss_pred CCCCHHHHHHHHHHH-cCCccHHHHHHHh--CCCHHHHHHHHHHHHHCCCEEEeC
Confidence 444333344445544 4679999999999 999999999999999999996633
No 192
>2w48_A Sorbitol operon regulator; SORC, activator, repressor, DNA-binding, transcription, transcription regulator, transcription regulation; 3.20A {Klebsiella pneumoniae}
Probab=92.82 E-value=0.18 Score=44.45 Aligned_cols=49 Identities=14% Similarity=0.293 Sum_probs=43.1
Q ss_pred HHHHHHHHHHhhCCCcccHHHHHHHhhcCCChHHHHHHHHHHHhCCCce-ee
Q 026766 19 HERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIK-EV 69 (233)
Q Consensus 19 ~e~lVy~~I~~aG~~GIw~~dik~~t~~~l~~~~v~k~LK~Le~k~lIK-~v 69 (233)
+++++..+..-.-..|+.+++|.+++ +++..+|+|-|+.|+++|+|+ ++
T Consensus 6 ~~~~~~~ia~l~~~~~~~~~ela~~l--~vS~~tIrRdL~~l~~~G~v~iri 55 (315)
T 2w48_A 6 DIRLIVKIAQLYYEQDMTQAQIAREL--GIYRTTISRLLKRGREQGIVTIAI 55 (315)
T ss_dssp HHHHHHHHHHHHHTSCCCHHHHHHHT--TCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHH--CcCHHHHHHHHHHHHHCCcEEEEe
Confidence 56677777776777889999999999 999999999999999999997 55
No 193
>1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2
Probab=92.76 E-value=0.33 Score=32.85 Aligned_cols=46 Identities=20% Similarity=0.323 Sum_probs=39.3
Q ss_pred CCCCCCChHHHHHHHHHHhhCCCcccHHHHHHHhhcCCChHHHHHHHHHHHh
Q 026766 11 APSDSLTDHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQN 62 (233)
Q Consensus 11 ~~~~~L~~~e~lVy~~I~~aG~~GIw~~dik~~t~~~l~~~~v~k~LK~Le~ 62 (233)
.....||+.|+.|+.++ ..|...++|...+ |++.++|.+.++.+..
T Consensus 7 ~~~~~L~~~e~~il~~~----~~g~s~~eIA~~l--~is~~tV~~~~~~~~~ 52 (74)
T 1fse_A 7 QSKPLLTKREREVFELL----VQDKTTKEIASEL--FISEKTVRNHISNAMQ 52 (74)
T ss_dssp -CCCCCCHHHHHHHHHH----TTTCCHHHHHHHH--TSCHHHHHHHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHH----HcCCCHHHHHHHH--CCCHHHHHHHHHHHHH
Confidence 35778999999999886 3578999999999 9999999999988664
No 194
>1bm9_A RTP, TER, replication terminator protein; DNA-binding protein, contrahelicase; 2.00A {Bacillus subtilis} SCOP: a.4.5.7 PDB: 1f4k_A 1j0r_A 2dpd_A 2dpu_A 2efw_A* 2dqr_A
Probab=92.74 E-value=0.55 Score=36.96 Aligned_cols=84 Identities=11% Similarity=0.105 Sum_probs=60.2
Q ss_pred CCCCCCCCCCCCCCCCChHHHHHHHHHHhhCCCcccHHH-HHHH-h--hcCCChHHHHHHHHHHHhCCCceeeecc-cCC
Q 026766 1 MSKRKRPDSNAPSDSLTDHERLIYDVIRSKQDMGIWTRD-MKRE-L--RVNLPDNIVTKSIKSLQNKSLIKEVVNI-HSK 75 (233)
Q Consensus 1 ~~~~~~~~~~~~~~~L~~~e~lVy~~I~~aG~~GIw~~d-ik~~-t--~~~l~~~~v~k~LK~Le~k~lIK~vksV-~~~ 75 (233)
|-++||...+=-++.+.=-...|+.++.+.---|-|..+ |+.+ + +-.+++.+|-.+|..||++|++++.... ..+
T Consensus 1 ~~~~~~~~~~~~~~~~~fl~l~IL~ll~~~p~YGYeI~~~L~e~~~~~~~~is~gtlYp~L~rLe~~Gll~~~~~~~~g~ 80 (122)
T 1bm9_A 1 MKEEKRSSTGFLVKQRAFLKLYMITMTEQERLYGLKLLEVLRSEFKEIGFKPNHTEVYRSLHELLDDGILKQIKVKKEGA 80 (122)
T ss_dssp --CCSCCCCSSSCCHHHHHHHHHHHHHHTTCCBSTTHHHHHHHHHTTTTCCCCHHHHHHHHHHHHHTTSEEEEEEECTTS
T ss_pred CcccccCCchhHHHHHHHHHHHHHHHHccCCchHHHHHHHHHHhhccCcccCCcccHHHHHHHHHHCCCeEEEEeecCCC
Confidence 445666666655555555678899999988888888765 4443 2 3389999999999999999999998874 233
Q ss_pred Ce---eeEEeec
Q 026766 76 GK---KHLMAVE 84 (233)
Q Consensus 76 ~r---K~Yml~~ 84 (233)
.+ |+|-+.+
T Consensus 81 ~r~~rkyY~lT~ 92 (122)
T 1bm9_A 81 KLQEVVLYQFKD 92 (122)
T ss_dssp TTCEEEEEEESC
T ss_pred CCCceeEEEECh
Confidence 33 7776554
No 195
>3dkw_A DNR protein; CRP-FNR, HTH, beta barrel, dimerization helix, homodimer, transcription regulator; 3.60A {Pseudomonas aeruginosa}
Probab=92.73 E-value=0.21 Score=40.25 Aligned_cols=50 Identities=8% Similarity=0.201 Sum_probs=39.0
Q ss_pred ChHHHHHHHHHHhhCC---------CcccHHHHHHHhhcCCChHHHHHHHHHHHhCCCcee
Q 026766 17 TDHERLIYDVIRSKQD---------MGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKE 68 (233)
Q Consensus 17 ~~~e~lVy~~I~~aG~---------~GIw~~dik~~t~~~l~~~~v~k~LK~Le~k~lIK~ 68 (233)
+..+++..-+++.+.. --+.+++|..-+ |++..+|+|+|+.|+++|+|+.
T Consensus 152 ~~~~Rl~~~L~~~~~~~~~~~~~~~~~~t~~~lA~~l--g~sr~tvsR~l~~l~~~g~I~~ 210 (227)
T 3dkw_A 152 NATHRVVRYLLTLAAHAPGENCRVEIPVAKQLVAGHL--SIQPETFSRIMHRLGDEGIIHL 210 (227)
T ss_dssp HHHHHHHHHHHHHHCSSSSSCCCCCCCSCTHHHHHHT--TSCHHHHHHHHHHHHHHTSEEE
T ss_pred CHHHHHHHHHHHhhhhcCCCCeEEEecCCHHHHHHHh--CCCHHHHHHHHHHHHHCCcEEe
Confidence 3456665555554432 246789999999 9999999999999999999975
No 196
>3rkx_A Biotin-[acetyl-COA-carboxylase] ligase; biotin protein ligase, 3 domains, enzyme DNA binding, biotin coupling domains; 2.10A {Staphylococcus aureus} PDB: 3rir_A* 3rkw_A 3rky_A* 3v7c_A* 3v7s_A* 3v8j_A 3v7r_A 3v8k_A* 3v8l_A* 4dq2_A*
Probab=92.61 E-value=0.23 Score=44.62 Aligned_cols=48 Identities=15% Similarity=0.212 Sum_probs=42.3
Q ss_pred CChHHHHHHHHHHhhCCCcccHHHHHHHhhcCCChHHHHHHHHHHHhCCC
Q 026766 16 LTDHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSL 65 (233)
Q Consensus 16 L~~~e~lVy~~I~~aG~~GIw~~dik~~t~~~l~~~~v~k~LK~Le~k~l 65 (233)
|++-.+.|++++.++.+.-+.-.+|..++ +++.+.|.|.++.|++.|+
T Consensus 1 M~~~~~~iL~~L~~~~g~~~Sg~eLa~~l--gvSr~aV~k~i~~L~~~G~ 48 (323)
T 3rkx_A 1 MSKYSQDVLQLLYKNKPNYISGQSIAESL--NISRTAVKKVIDQLKLEGC 48 (323)
T ss_dssp --CHHHHHHHHHHHHTTSCBCHHHHHHHH--TSCHHHHHHHHHHHHHTTC
T ss_pred CchHHHHHHHHHHhCCCCccCHHHHHHHH--CCCHHHHHHHHHHHHhcCC
Confidence 44566789999988777779999999999 9999999999999999999
No 197
>2o0y_A Transcriptional regulator; ICLR-family, structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 2.00A {Rhodococcus SP}
Probab=92.60 E-value=0.059 Score=46.45 Aligned_cols=46 Identities=11% Similarity=0.204 Sum_probs=38.5
Q ss_pred HHHHHHHhh--CCCcccHHHHHHHhhcCCChHHHHHHHHHHHhCCCceee
Q 026766 22 LIYDVIRSK--QDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEV 69 (233)
Q Consensus 22 lVy~~I~~a--G~~GIw~~dik~~t~~~l~~~~v~k~LK~Le~k~lIK~v 69 (233)
..+.+++.- .+.++...||.+++ +|+..++.|.|+.|++.|+|...
T Consensus 24 r~l~iL~~l~~~~~~~~~~eia~~~--gl~kstv~r~l~tL~~~G~v~~~ 71 (260)
T 2o0y_A 24 RVIDLLELFDAAHPTRSLKELVEGT--KLPKTTVVRLVATMCARSVLTSR 71 (260)
T ss_dssp HHHHHHTTCBTTBSSBCHHHHHHHH--CCCHHHHHHHHHHHHHTTSEEEC
T ss_pred HHHHHHHHHhhCCCCcCHHHHHHHH--CcCHHHHHHHHHHHHHCCCEEEC
Confidence 455565542 34689999999999 99999999999999999999763
No 198
>1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2
Probab=92.46 E-value=0.19 Score=30.79 Aligned_cols=45 Identities=16% Similarity=0.217 Sum_probs=34.6
Q ss_pred CCCChHHH-HHHHHHHhhCCCcccHHHHHHHhhcCCChHHHHHHHHHHHhCC
Q 026766 14 DSLTDHER-LIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKS 64 (233)
Q Consensus 14 ~~L~~~e~-lVy~~I~~aG~~GIw~~dik~~t~~~l~~~~v~k~LK~Le~k~ 64 (233)
..|+++++ .|+.+. ..|+..++|.+.+ +++.++|.+.++..++.|
T Consensus 4 ~~l~~~~~~~i~~~~----~~g~s~~~IA~~l--gis~~Tv~~~~~~~~~~g 49 (51)
T 1tc3_C 4 SALSDTERAQLDVMK----LLNVSLHEMSRKI--SRSRHCIRVYLKDPVSYG 49 (51)
T ss_dssp CCCCHHHHHHHHHHH----HTTCCHHHHHHHH--TCCHHHHHHHHHCSTTTT
T ss_pred CCCCHHHHHHHHHHH----HcCCCHHHHHHHH--CcCHHHHHHHHhhHHhcC
Confidence 35777776 444443 3578999999999 999999999998776554
No 199
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=92.40 E-value=0.31 Score=38.28 Aligned_cols=65 Identities=9% Similarity=0.125 Sum_probs=52.3
Q ss_pred CCChHHHHHHHHHHhhCCCcccHHHHHHHhh---cCCChHHHHHHHHHHHhCCCceeeecccCCCeeeEEe
Q 026766 15 SLTDHERLIYDVIRSKQDMGIWTRDMKRELR---VNLPDNIVTKSIKSLQNKSLIKEVVNIHSKGKKHLMA 82 (233)
Q Consensus 15 ~L~~~e~lVy~~I~~aG~~GIw~~dik~~t~---~~l~~~~v~k~LK~Le~k~lIK~vksV~~~~rK~Yml 82 (233)
.+|+.-+.|++++.+++. -+...+|-..++ +++...+|-|.|+.|++.|+|.++..-. +...|-+
T Consensus 11 r~T~qR~~Il~~L~~~~~-h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~Glv~~~~~~~--g~~~Y~~ 78 (139)
T 3mwm_A 11 RATRQRAAVSAALQEVEE-FRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAGEVDVLRTAE--GESVYRR 78 (139)
T ss_dssp HHHHHHHHHHHHHTTCSS-CEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSSEEEECTT--SCEEEEC
T ss_pred ccCHHHHHHHHHHHhCCC-CCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCCEEEEEcCC--CceEEEE
Confidence 467788899999988754 799999988873 4799999999999999999999887633 4455643
No 200
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=92.40 E-value=0.28 Score=37.95 Aligned_cols=57 Identities=18% Similarity=0.214 Sum_probs=48.2
Q ss_pred CChHHHHHHHHHHhhCCCcccHHHHHHHhh---cCCChHHHHHHHHHHHhCCCceeeeccc
Q 026766 16 LTDHERLIYDVIRSKQDMGIWTRDMKRELR---VNLPDNIVTKSIKSLQNKSLIKEVVNIH 73 (233)
Q Consensus 16 L~~~e~lVy~~I~~aG~~GIw~~dik~~t~---~~l~~~~v~k~LK~Le~k~lIK~vksV~ 73 (233)
+|+.-..|++++.++ +.-+...+|-..++ ++++..+|-|.|+.|++.|+|.++..-.
T Consensus 9 ~T~qR~~Il~~l~~~-~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~Glv~~~~~~~ 68 (131)
T 2o03_A 9 STRQRAAISTLLETL-DDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSGLVDTLHTDT 68 (131)
T ss_dssp HHHHHHHHHHHHHHC-CSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTTSEEEEECTT
T ss_pred CCHHHHHHHHHHHhC-CCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCEEEEEeCC
Confidence 567778899999875 44689999988873 4899999999999999999999887654
No 201
>1ylf_A RRF2 family protein; structural genomics, transcription regulator, P protein structure initiative; 2.50A {Bacillus cereus atcc 14579} SCOP: a.4.5.55
Probab=92.39 E-value=0.23 Score=39.26 Aligned_cols=63 Identities=11% Similarity=0.062 Sum_probs=45.3
Q ss_pred HHHHHHhhCCCcccHHHHHHHhhcCCChHHHHHHHHHHHhCCCceeeecccCCCeeeEEeeccccCCCcccC
Q 026766 23 IYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVVNIHSKGKKHLMAVEFEPSKEISGG 94 (233)
Q Consensus 23 Vy~~I~~aG~~GIw~~dik~~t~~~l~~~~v~k~LK~Le~k~lIK~vksV~~~~rK~Yml~~lePs~eiTGG 94 (233)
++-+|...++.-+..++|..++ +++.+.|.|+|..|.+.|||.+++- + --|.|. .|.++||=|
T Consensus 19 ~L~~La~~~~~~~~~~~iA~~~--~i~~~~l~kil~~L~~~Glv~s~rG-~----GGy~L~--~~p~~Itl~ 81 (149)
T 1ylf_A 19 ILSILKNNPSSLCTSDYMAESV--NTNPVVIRKIMSYLKQAGFVYVNRG-P----GGAGLL--KDLHEITLL 81 (149)
T ss_dssp HHHHHHHSCGGGCCHHHHHHHH--TSCHHHHHHHHHHHHHTTSEEEC--------CCEEES--SCGGGCBHH
T ss_pred HHHHHHhCCCCCcCHHHHHHHH--CcCHHHHHHHHHHHHHCCcEEEccC-C----CceEeC--CChhhCcHH
Confidence 3334444344458999999999 9999999999999999999987665 2 246664 456677744
No 202
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=91.92 E-value=0.52 Score=38.04 Aligned_cols=56 Identities=9% Similarity=0.191 Sum_probs=47.6
Q ss_pred CCChHHHHHHHHHHhhCCCcccHHHHHHHh-----hcCCChHHHHHHHHHHHhCCCceeeec
Q 026766 15 SLTDHERLIYDVIRSKQDMGIWTRDMKREL-----RVNLPDNIVTKSIKSLQNKSLIKEVVN 71 (233)
Q Consensus 15 ~L~~~e~lVy~~I~~aG~~GIw~~dik~~t-----~~~l~~~~v~k~LK~Le~k~lIK~vks 71 (233)
.+|+.-+.|++++.+++ .-+...+|-..+ ++++...+|-|.|+.|++.|+|.++..
T Consensus 30 r~T~qR~~IL~~L~~~~-~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Glv~~i~~ 90 (162)
T 4ets_A 30 KYTKQREVLLKTLYHSD-THYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEMVTSISF 90 (162)
T ss_dssp CCCHHHHHHHHHHHSCC-SCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTSEEECC-
T ss_pred CCCHHHHHHHHHHHhCC-CCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCEEEEEe
Confidence 57888899999999875 578899887765 347999999999999999999988754
No 203
>1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A
Probab=91.88 E-value=0.3 Score=34.72 Aligned_cols=50 Identities=24% Similarity=0.395 Sum_probs=40.2
Q ss_pred CCCCCCCCCChHHHHHHHHHHhhCCCcccHHHHHHHhhcCCChHHHHHHHHHHHhC
Q 026766 8 DSNAPSDSLTDHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNK 63 (233)
Q Consensus 8 ~~~~~~~~L~~~e~lVy~~I~~aG~~GIw~~dik~~t~~~l~~~~v~k~LK~Le~k 63 (233)
.....+..||+.|+.|+.++ -.|...++|...+ +++.++|.+.++.+.+|
T Consensus 14 ~~~~~~~~Lt~~e~~vl~l~----~~g~s~~eIA~~l--~is~~tV~~~l~r~~~k 63 (82)
T 1je8_A 14 TTERDVNQLTPRERDILKLI----AQGLPNKMIARRL--DITESTVKVHVKHMLKK 63 (82)
T ss_dssp ---CCGGGSCHHHHHHHHHH----TTTCCHHHHHHHH--TSCHHHHHHHHHHHHHH
T ss_pred HHHHHHccCCHHHHHHHHHH----HcCCCHHHHHHHH--CcCHHHHHHHHHHHHHH
Confidence 34456778999999999885 3679999999999 99999999888876543
No 204
>1stz_A Heat-inducible transcription repressor HRCA homol; circe element, structural genomics, BSGC structure FUN NIH, protein structure initiative; 2.20A {Thermotoga maritima} SCOP: a.4.5.51 d.110.2.3
Probab=91.87 E-value=0.3 Score=44.14 Aligned_cols=51 Identities=16% Similarity=0.286 Sum_probs=45.5
Q ss_pred CChHHHHHHH-----HHHhhCCCcccHHHHHHHhhcCCChHHHHHHHHHHHhCCCcee
Q 026766 16 LTDHERLIYD-----VIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKE 68 (233)
Q Consensus 16 L~~~e~lVy~-----~I~~aG~~GIw~~dik~~t~~~l~~~~v~k~LK~Le~k~lIK~ 68 (233)
|++-++.|++ +|+.++. +-.++|.++.+.++++.+|++-|+.||++|+|++
T Consensus 15 l~eR~~~IL~~i~~~yl~~~~p--V~s~~La~~~~l~VS~aTIRrDL~~LE~~GlL~r 70 (338)
T 1stz_A 15 LNDRQRKVLYCIVREYIENKKP--VSSQRVLEVSNIEFSSATIRNDMKKLEYLGYIYQ 70 (338)
T ss_dssp CCHHHHHHHHHHHHHHHHHCSC--BCHHHHHHHSCCCSCHHHHHHHHHHHHHTTSEEC
T ss_pred HHHHHHHHHHHHHHHHHHcCCC--ccHHHHHHHhCCCCCHHHHHHHHHHHHHCCCEEE
Confidence 7888889999 7888888 9999999987447789999999999999999976
No 205
>3fx3_A Cyclic nucleotide-binding protein; helix_TURN_helix, CAMP regulatory protein, structural genomi 2, protein structure initiative; 2.20A {Ruegeria pomeroyi} PDB: 3h3z_A*
Probab=91.65 E-value=0.42 Score=38.85 Aligned_cols=51 Identities=8% Similarity=0.026 Sum_probs=40.3
Q ss_pred CCCCChHHHHHHHHHHhhCCCc--------ccHHHHHHHhhcCCChHHHHHHHHHHHhCCC
Q 026766 13 SDSLTDHERLIYDVIRSKQDMG--------IWTRDMKRELRVNLPDNIVTKSIKSLQNKSL 65 (233)
Q Consensus 13 ~~~L~~~e~lVy~~I~~aG~~G--------Iw~~dik~~t~~~l~~~~v~k~LK~Le~k~l 65 (233)
+...+..+++..-+++-+...| +.+++|..-+ |++..+|+|+|+.|++.|+
T Consensus 149 l~~~~~~~Rl~~~L~~~~~~~~~~~~~~l~~t~~~iA~~l--g~sr~tvsR~l~~L~~~gi 207 (237)
T 3fx3_A 149 LKAQTGAQRVAEFLLELCDCDTGACEVTLPYDKMLIAGRL--GMKPESLSRAFSRLKAAGV 207 (237)
T ss_dssp CCCCCHHHHHHHHHHHHCCC-----EEECCSCTHHHHHHT--TCCHHHHHHHHHHHGGGTE
T ss_pred HhcCCHHHHHHHHHHHHhhhcCCCeEEEecCCHHHHHHHh--CCCHHHHHHHHHHHHHCCe
Confidence 3456778888777776554332 5589999999 9999999999999999994
No 206
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=91.65 E-value=0.56 Score=32.84 Aligned_cols=53 Identities=6% Similarity=0.091 Sum_probs=45.2
Q ss_pred HHHHHHHhhhC--CCCCHHHHHHHHHHhCCcccccCHHHHHHHHHHHhcCCeEEEEee
Q 026766 111 KSQCLKQIIKL--KVATLEGISDSIKRSGAFKVDLTKQQIEEIVRALVLDNQIMEVKS 166 (233)
Q Consensus 111 ~~~~~~~i~~~--~~~T~~~I~~~I~~~~i~~~~Ls~~di~~il~~Lv~Dg~ie~v~~ 166 (233)
+..++.+|... +.+|++||++.+++.+. .++..=|...|+.|+-.|.|.++..
T Consensus 19 r~~IL~~l~~~~~~~~s~~el~~~l~~~~~---~is~~TVyR~L~~L~~~Glv~~~~~ 73 (83)
T 2fu4_A 19 RLKILEVLQEPDNHHVSAEDLYKRLIDMGE---EIGLATVYRVLNQFDDAGIVTRHNF 73 (83)
T ss_dssp HHHHHHHHTSGGGSSBCHHHHHHHHHHTTC---CCCHHHHHHHHHHHHHHTSEEEEEC
T ss_pred HHHHHHHHHhCCCCCCCHHHHHHHHHHhCC---CCCHhhHHHHHHHHHHCCCeEEEee
Confidence 45688888765 68999999999988762 5889999999999999999998863
No 207
>1lva_A Selenocysteine-specific elongation factor; winged-helix, translation; 2.12A {Moorella thermoacetica} SCOP: a.4.5.35 a.4.5.35 a.4.5.35 a.4.5.35 PDB: 2uwm_A 2ply_A 1wsu_A
Probab=91.65 E-value=1.4 Score=38.00 Aligned_cols=105 Identities=12% Similarity=0.232 Sum_probs=75.5
Q ss_pred CCcccHHHHHHHhhcCCChHHHHHHHHHHHhCCCceeeecccCCCeeeEEeeccccCCCcccCCcccCCCCCHHHHHHHH
Q 026766 32 DMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVVNIHSKGKKHLMAVEFEPSKEISGGAWYSEGSLDTEFIKVVK 111 (233)
Q Consensus 32 ~~GIw~~dik~~t~~~l~~~~v~k~LK~Le~k~lIK~vksV~~~~rK~Yml~~lePs~eiTGG~wy~d~e~D~efI~~l~ 111 (233)
..||...+|+.+....++...+...|..|++.|.|+.... .+-+.+.+ -.|+.+. +.+.
T Consensus 85 ~~G~~~~~L~~~~~~~~~~~l~~~ll~~l~~~g~l~~~~~-------~v~l~~h~-------------~~~~~~~-~~~~ 143 (258)
T 1lva_A 85 RPGLAREELRSRYFSRLPARVYQALLEEWSREGRLQLAAN-------TVALAGFT-------------PSFSETQ-KKLL 143 (258)
T ss_dssp SSCEEHHHHHHHHCTTSCHHHHHHHHHHHHHTTSEEEETT-------EEEETTCC-------------CCCCHHH-HHHH
T ss_pred ccCCCHHHHHHhccccCCHHHHHHHHHHHHHCCCEEecCC-------EEeCCCCc-------------cCCCHHH-HHHH
Confidence 4789999999998435899999999999999999865322 11111111 2455544 5666
Q ss_pred HHHHHHhhhCC--CCCHHHHHHHHHHhCCcccccCHHHHHHHHHHHhcCCeEEEEe
Q 026766 112 SQCLKQIIKLK--VATLEGISDSIKRSGAFKVDLTKQQIEEIVRALVLDNQIMEVK 165 (233)
Q Consensus 112 ~~~~~~i~~~~--~~T~~~I~~~I~~~~i~~~~Ls~~di~~il~~Lv~Dg~ie~v~ 165 (233)
+.+...+.+.+ .|++.|+.+- . .+..++++.+|+.|+-.|.|.++.
T Consensus 144 ~~i~~~~~~~g~~pp~~~dl~~~---l-----~~~~~~~~~~l~~l~~~g~lv~l~ 191 (258)
T 1lva_A 144 KDLEDKYRVSRWQPPSFKEVAGS---F-----NLDPSELEELLHYLVREGVLVKIN 191 (258)
T ss_dssp HHHHHHHHHHTTSCCBHHHHHHH---T-----TCCHHHHHHHHHHHHHTTSEEESS
T ss_pred HHHHHHHHHCCCCCCCHHHHHhH---h-----CCCHHHHHHHHHHHHHCCCEEEec
Confidence 67777676655 5677776643 2 378899999999999999998875
No 208
>1o5l_A Transcriptional regulator, CRP family; TM1171, structural GE JCSG, PSI, protein structure initiative, joint center for S genomics; 2.30A {Thermotoga maritima} SCOP: b.82.3.2
Probab=91.56 E-value=0.036 Score=45.06 Aligned_cols=51 Identities=14% Similarity=0.263 Sum_probs=0.4
Q ss_pred CChHHHHHHHHHHhhCCCc-----ccHHHHHHHhhcCCChHHHHHHHHHHHhCCCcee
Q 026766 16 LTDHERLIYDVIRSKQDMG-----IWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKE 68 (233)
Q Consensus 16 L~~~e~lVy~~I~~aG~~G-----Iw~~dik~~t~~~l~~~~v~k~LK~Le~k~lIK~ 68 (233)
.+.++++..-+++.+...| +.+.+|..-+ |++..+|+|+|+.|+++|+|+.
T Consensus 141 ~~~~~Rl~~~L~~~~~~~g~~~~~~t~~~lA~~l--g~sr~tvsR~l~~L~~~G~I~~ 196 (213)
T 1o5l_A 141 KTLREKLMNFLVRHMNEKRELTLPVTLEELSRLF--GCARPALSRVFQELEREGYIEK 196 (213)
T ss_dssp C---------------------------------------------------------
T ss_pred CCHHHHHHHHHHHHhccCCcccCCCCHHHHHHHh--CCCHHHHHHHHHHHHHCCeEEE
Confidence 4556666665555554433 7899999999 9999999999999999999965
No 209
>3eyi_A Z-DNA-binding protein 1; alternative splicing, DNA-binding, polymorphism, DNA binding protein/Z-DNA complex, DNA binding protein/DNA complex; 1.45A {Homo sapiens} PDB: 2l4m_A
Probab=91.55 E-value=0.57 Score=33.60 Aligned_cols=61 Identities=11% Similarity=0.237 Sum_probs=48.6
Q ss_pred CCChH-HHHHHHHHHhhCCCcccHHHHHHHhhcCCChHH-HHHHHHHHHhCCCceeeecccCCCeeeEEeec
Q 026766 15 SLTDH-ERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNI-VTKSIKSLQNKSLIKEVVNIHSKGKKHLMAVE 84 (233)
Q Consensus 15 ~L~~~-e~lVy~~I~~aG~~GIw~~dik~~t~~~l~~~~-v~k~LK~Le~k~lIK~vksV~~~~rK~Yml~~ 84 (233)
.|++. |..||++++++|. -..-.|.+.+ ||-... |+..|=.|++++|+.- +.+.++|.+|.
T Consensus 6 qls~~~ee~I~~fL~~~Gp--~~AL~IAK~L--GlktAK~VNp~LY~m~~~~lL~~-----Dek~~~W~iy~ 68 (72)
T 3eyi_A 6 QFSQQREEDIYRFLKDNGP--QRALVIAQAL--GMRTAKDVNRDLYRMKSRHLLDM-----DEQSKAWTIYR 68 (72)
T ss_dssp CCSSHHHHHHHHHHHHHCS--EEHHHHHHHT--TCCSGGGTHHHHHHHHHTTSEEE-----CTTTCEEEEC-
T ss_pred hhhhhhHHHHHHHHHHcCC--chHHHHHHHh--CcchhhhcCHHHHHHHHccCcCC-----CCCCCceeEEE
Confidence 46664 7899999999998 6677899999 998775 9999999999999932 34566777664
No 210
>2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2
Probab=91.50 E-value=0.69 Score=31.29 Aligned_cols=48 Identities=6% Similarity=0.042 Sum_probs=38.9
Q ss_pred CCCCCChHHHHHHHHHH-hhCCCcccHHHHHHHhhcCCChHHHHHHHHHHH
Q 026766 12 PSDSLTDHERLIYDVIR-SKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQ 61 (233)
Q Consensus 12 ~~~~L~~~e~lVy~~I~-~aG~~GIw~~dik~~t~~~l~~~~v~k~LK~Le 61 (233)
.+..||+.|+.|+.+.. -.|-.|...++|...+ |++..+|.+.+...-
T Consensus 2 ~l~~L~~~er~il~l~~~l~~~~g~s~~eIA~~l--gis~~tV~~~~~ra~ 50 (68)
T 2p7v_B 2 VLAGLTAREAKVLRMRFGIDMNTDYTLEEVGKQF--DVTRERIRQIEAKAL 50 (68)
T ss_dssp CSCCCCHHHHHHHHHHTTTTSSSCCCHHHHHHHH--TCCHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHccCCCCCCCHHHHHHHH--CcCHHHHHHHHHHHH
Confidence 36789999999988776 3445799999999999 999998887666543
No 211
>1xd7_A YWNA; structural genomics, protein structure initiative, winged HE binding, hypothetical protein, PSI; 2.30A {Bacillus subtilis subsp} SCOP: a.4.5.55
Probab=91.49 E-value=0.33 Score=38.17 Aligned_cols=62 Identities=13% Similarity=0.095 Sum_probs=46.1
Q ss_pred HHHHHHHhhCCCcccHHHHHHHhhcCCChHHHHHHHHHHHhCCCceeeecccCCCeeeEEeeccccCCCcccC
Q 026766 22 LIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVVNIHSKGKKHLMAVEFEPSKEISGG 94 (233)
Q Consensus 22 lVy~~I~~aG~~GIw~~dik~~t~~~l~~~~v~k~LK~Le~k~lIK~vksV~~~~rK~Yml~~lePs~eiTGG 94 (233)
.++-+|....+ + ..++|..+. ++|.+.|.|+|..|.+.|||.+++- + . =|.|+ .|.++||=|
T Consensus 13 ~~L~~La~~~~-~-s~~~IA~~~--~i~~~~l~kIl~~L~~aGlv~s~rG-~-G---Gy~La--r~p~~Itl~ 74 (145)
T 1xd7_A 13 HILSLISMDEK-T-SSEIIADSV--NTNPVVVRRMISLLKKADILTSRAG-V-P---GASLK--KDPADISLL 74 (145)
T ss_dssp HHHHHHHTCSC-C-CHHHHHHHH--TSCHHHHHHHHHHHHHTTSEECCSS-S-S---SCEES--SCGGGCBHH
T ss_pred HHHHHHHhCCC-C-CHHHHHHHH--CcCHHHHHHHHHHHHHCCceEeecC-C-C---Cceec--CCHHHCCHH
Confidence 34444554444 5 999999999 9999999999999999999988765 3 2 36664 456666633
No 212
>2v9v_A Selenocysteine-specific elongation factor; transcription, protein conformational change, transcription elongation factor SELB; 1.10A {Moorella thermoacetica} SCOP: a.4.5.35 a.4.5.35
Probab=91.46 E-value=3.6 Score=31.11 Aligned_cols=111 Identities=8% Similarity=0.073 Sum_probs=82.5
Q ss_pred HHHHHHHHHhhCCCcccHHHHHHHhhcCCChHHHHHHHHHHHhCCCceeeecccCCCeeeEEeeccccCCCcccCCcccC
Q 026766 20 ERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVVNIHSKGKKHLMAVEFEPSKEISGGAWYSE 99 (233)
Q Consensus 20 e~lVy~~I~~aG~~GIw~~dik~~t~~~l~~~~v~k~LK~Le~k~lIK~vksV~~~~rK~Yml~~lePs~eiTGG~wy~d 99 (233)
+..|-.++..++.. +...+|...+ +++..++...|..|...+-|..+.. .....|
T Consensus 4 ~~~l~~~L~~~~~~-~~~~~l~~~~--~l~~~~l~~~l~~l~~~~~~~~~~~---~~~~~~------------------- 58 (135)
T 2v9v_A 4 EKILAQIIQEHREG-LDWQEAATRA--SLSLEETRKLLQSMAAAGQVTLLRV---ENDLYA------------------- 58 (135)
T ss_dssp HHHHHHHHHHCSSC-EEHHHHHHHH--TCCHHHHHHHHHHHHHTTCEEEEEE---TTEEEE-------------------
T ss_pred HHHHHHHHHHcCcC-CCHHHHHHHh--CCCHHHHHHHHHHHHhCCcEEEEec---CCCeEE-------------------
Confidence 34567778777765 5559999999 9999999999999998777655432 011112
Q ss_pred CCCCHHHHHHHHHHHHHHhhh-------CCCCCHHHHHHHHHHhCCcccccCHHHHHHHHHHHhcCCeEEE
Q 026766 100 GSLDTEFIKVVKSQCLKQIIK-------LKVATLEGISDSIKRSGAFKVDLTKQQIEEIVRALVLDNQIME 163 (233)
Q Consensus 100 ~e~D~efI~~l~~~~~~~i~~-------~~~~T~~~I~~~I~~~~i~~~~Ls~~di~~il~~Lv~Dg~ie~ 163 (233)
+..+..+.+++.+...|.. +..+.-+++...+- -.+...-+..+|+.|+-+|.|..
T Consensus 59 --~~~~~~~~l~~~l~~~L~~yH~~~P~~~G~~keeLr~~~~------~~~~~~~~~~ll~~l~~~g~l~~ 121 (135)
T 2v9v_A 59 --ISTERYQAWWQAVTRALEEFHSRYPLRPGLAREELRSRYF------SRLPARVYQALLEEWSREGRLQL 121 (135)
T ss_dssp --EEHHHHHHHHHHHHHHHHHHHHHCTTSSCEEHHHHHHHHC------TTSCHHHHHHHHHHHHHTTSEEE
T ss_pred --ecHHHHHHHHHHHHHHHHHHHHhCCCccCCCHHHHHHHhc------ccCCHHHHHHHHHHHHHCCCEEe
Confidence 4567888888888888873 34666888776652 13588889999999999999865
No 213
>2z99_A Putative uncharacterized protein; winged helix domain, cell cycle, cell division, chromosome partition, cytoplasm; 2.30A {Mycobacterium tuberculosis}
Probab=91.39 E-value=0.73 Score=39.65 Aligned_cols=60 Identities=17% Similarity=0.153 Sum_probs=49.4
Q ss_pred CCCChHHHHHHHHHHhhCCCcccHHHHHHHhhcCCChHHHHHHHHHHHhCCCceeeecccCCCeeeE
Q 026766 14 DSLTDHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVVNIHSKGKKHL 80 (233)
Q Consensus 14 ~~L~~~e~lVy~~I~~aG~~GIw~~dik~~t~~~l~~~~v~k~LK~Le~k~lIK~vksV~~~~rK~Y 80 (233)
..|+.-...+|.+|...+. |.+.+|.+.. |+.. +++++.|.++|||+++..-..++..+|
T Consensus 96 ~~Ls~aaLEtLaiIAy~QP--ITR~eI~~ir--Gv~~---~~~v~~Lle~gLI~e~Gr~~~~Gp~ly 155 (219)
T 2z99_A 96 TKLTRAALETLAVVAYRQP--VTRARVSAVR--GVNV---DAVMRTLLARGLITEVGTDADTGAVTF 155 (219)
T ss_dssp CCCCHHHHHHHHHHHHHCS--EEHHHHHHHH--TSCC---HHHHHHHHHTTSEEEEEECTTTCCEEE
T ss_pred CccCHHHHHHHHHHHHcCC--cCHHHHHHHH--CCCH---HHHHHHHHHCCCEEEccccCCCCCeEE
Confidence 4588888889999999876 9999999999 8776 789999999999999865444444444
No 214
>3c57_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 1.70A {Mycobacterium tuberculosis} PDB: 1zlk_A 1zlj_A
Probab=91.38 E-value=0.34 Score=35.43 Aligned_cols=46 Identities=22% Similarity=0.422 Sum_probs=36.0
Q ss_pred CCCCCCChHHHHHHHHHHhhCCCcccHHHHHHHhhcCCChHHHHHHHHHHHh
Q 026766 11 APSDSLTDHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQN 62 (233)
Q Consensus 11 ~~~~~L~~~e~lVy~~I~~aG~~GIw~~dik~~t~~~l~~~~v~k~LK~Le~ 62 (233)
..+..||+.|+.|+.++ -.|...++|...+ +++.++|.+.++.+.+
T Consensus 23 ~~l~~Lt~~e~~vl~l~----~~g~s~~eIA~~l--~is~~tV~~~l~r~~~ 68 (95)
T 3c57_A 23 DPLSGLTDQERTLLGLL----SEGLTNKQIADRM--FLAEKTVKNYVSRLLA 68 (95)
T ss_dssp ----CCCHHHHHHHHHH----HTTCCHHHHHHHH--TCCHHHHHHHHHHHHH
T ss_pred HHHhcCCHHHHHHHHHH----HcCCCHHHHHHHH--CcCHHHHHHHHHHHHH
Confidence 45778999999999996 4679999999999 9999988877766554
No 215
>3k69_A Putative transcription regulator; putative transcriptional regulator, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 1.95A {Lactobacillus plantarum} SCOP: a.4.5.0
Probab=91.25 E-value=0.29 Score=39.59 Aligned_cols=49 Identities=12% Similarity=0.229 Sum_probs=39.5
Q ss_pred HHHHHHHhhCCCcccHHHHHHHhhcCCChHHHHHHHHHHHhCCCceeeecc
Q 026766 22 LIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVVNI 72 (233)
Q Consensus 22 lVy~~I~~aG~~GIw~~dik~~t~~~l~~~~v~k~LK~Le~k~lIK~vksV 72 (233)
.++-++....+.-+..++|..+. +++.+.|.|+|+.|.+.|||.+++..
T Consensus 16 r~l~~La~~~~~~~s~~~IA~~~--~is~~~l~kil~~L~~aGlv~s~rG~ 64 (162)
T 3k69_A 16 HSILYLDAHRDSKVASRELAQSL--HLNPVMIRNILSVLHKHGYLTGTVGK 64 (162)
T ss_dssp HHHHHHHTTTTSCBCHHHHHHHH--TSCGGGTHHHHHHHHHTTSSEEECST
T ss_pred HHHHHHHhCCCCCcCHHHHHHHH--CcCHHHHHHHHHHHHHCCCEEeecCC
Confidence 34444554444558999999999 99999999999999999999876554
No 216
>1ku3_A Sigma factor SIGA; helix-turn-helix, transcription; 1.80A {Thermus aquaticus} SCOP: a.4.13.2 PDB: 1ku7_A 1rio_H 3n97_A*
Probab=91.17 E-value=0.88 Score=31.17 Aligned_cols=50 Identities=6% Similarity=0.176 Sum_probs=40.9
Q ss_pred CCCCCCCChHHHHHHHHHH-hhCCCcccHHHHHHHhhcCCChHHHHH----HHHHHH
Q 026766 10 NAPSDSLTDHERLIYDVIR-SKQDMGIWTRDMKRELRVNLPDNIVTK----SIKSLQ 61 (233)
Q Consensus 10 ~~~~~~L~~~e~lVy~~I~-~aG~~GIw~~dik~~t~~~l~~~~v~k----~LK~Le 61 (233)
...+..||+.|+.|+.+.. -.|..|...++|...+ |++.++|.+ ++++|.
T Consensus 5 ~~~l~~L~~~er~il~l~~~l~~~~~~s~~eIA~~l--~is~~tV~~~~~ra~~kLr 59 (73)
T 1ku3_A 5 EKALSKLSEREAMVLKMRKGLIDGREHTLEEVGAYF--GVTRERIRQIENKALRKLK 59 (73)
T ss_dssp SSSTTTSCHHHHHHHHHHHTTTTSSCCCHHHHHHHH--TCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHhcccCCCCCHHHHHHHH--CCCHHHHHHHHHHHHHHHH
Confidence 3457889999999998877 3566899999999999 999888766 566665
No 217
>2o0m_A Transcriptional regulator, SORC family; structural genomics, protein structure initiative, midwest center for structural genomics, MCSG; 1.60A {Enterococcus faecalis} SCOP: c.124.1.8
Probab=90.51 E-value=0.049 Score=48.94 Aligned_cols=49 Identities=16% Similarity=0.229 Sum_probs=0.0
Q ss_pred CCChHHHHHHHHHHhhCCCcccHHHHHHHhhcCCChHHHHHHHHHHHhCCCce
Q 026766 15 SLTDHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIK 67 (233)
Q Consensus 15 ~L~~~e~lVy~~I~~aG~~GIw~~dik~~t~~~l~~~~v~k~LK~Le~k~lIK 67 (233)
.+++.+..|+..|...+ |+.+++|.+++ +++..+|+|.|+.||++|+|+
T Consensus 17 ~~~~r~~~iL~~l~~~~--~~t~~eLa~~l--~vs~~Tv~r~l~~Le~~Glv~ 65 (345)
T 2o0m_A 17 DVLQERFQILRNIYWMQ--PIGRRSLSETM--GITERVLRTETDVLKQLNLIE 65 (345)
T ss_dssp -----------------------------------------------------
T ss_pred HhhHHHHHHHHHHHHcC--CCCHHHHHHHH--CcCHHHHHHHHHHHHHCCCEE
Confidence 46667778888887754 69999999999 999999999999999999997
No 218
>3lmm_A Uncharacterized protein; multi-domained alpha-beta protein, structural genomics, PSI- 2, protein structure initiative; 3.00A {Corynebacterium diphtheriae}
Probab=90.33 E-value=0.052 Score=52.69 Aligned_cols=62 Identities=13% Similarity=0.117 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhhCCCcccHHHHHHHhhcCCChHHHHHHHHHHHhCCCceeeecccCCCeeeEEeecccc
Q 026766 19 HERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVVNIHSKGKKHLMAVEFEP 87 (233)
Q Consensus 19 ~e~lVy~~I~~aG~~GIw~~dik~~t~~~l~~~~v~k~LK~Le~k~lIK~vksV~~~~rK~Yml~~leP 87 (233)
-+.+|++++++.|. |.++||..-+ +++..+++++|+.|+++|+|+.+ -..+--.|.+.+||-
T Consensus 517 ~~~~I~~~l~~~g~--it~~di~~l~--~ls~~qa~~~L~~Lv~~G~l~~~---G~gr~t~Y~~~~~~~ 578 (583)
T 3lmm_A 517 LTNAAMLWLSEVGD--LATSDLMAMC--GVSRGTAKACVDGLVDEERVVAV---GGGRSRRYRLVELEH 578 (583)
T ss_dssp ---------------------------------------------------------------------
T ss_pred HHHHHHHHHHHcCC--cCHHHHHHHH--CCCHHHHHHHHHHHHHCCcEEEe---CCCCceEEEEeeccc
Confidence 45789999999988 9999999999 99999999999999999999664 334556788888764
No 219
>3mq0_A Transcriptional repressor of the blcabc operon; helix-turn-helix, GAF fold, transcription repressor; 1.79A {Agrobacterium tumefaciens}
Probab=90.20 E-value=0.31 Score=42.37 Aligned_cols=45 Identities=16% Similarity=0.287 Sum_probs=36.6
Q ss_pred HHHHHHHhhCCCcccHHHHHHHhhcCCChHHHHHHHHHHHhCCCceee
Q 026766 22 LIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEV 69 (233)
Q Consensus 22 lVy~~I~~aG~~GIw~~dik~~t~~~l~~~~v~k~LK~Le~k~lIK~v 69 (233)
.|+.++.+++ .++...||.+++ +||.+++.|.|+.|++.|++..-
T Consensus 34 ~IL~~l~~~~-~~ltl~eia~~l--gl~ksTv~RlL~tL~~~G~v~~~ 78 (275)
T 3mq0_A 34 RILDLVAGSP-RDLTAAELTRFL--DLPKSSAHGLLAVMTELDLLARS 78 (275)
T ss_dssp HHHHHHHHCS-SCEEHHHHHHHH--TCC--CHHHHHHHHHHTTSEEEC
T ss_pred HHHHHHhhCC-CCCCHHHHHHHH--CcCHHHHHHHHHHHHHCCCEEEC
Confidence 3566666554 589999999999 99999999999999999999763
No 220
>2b0l_A GTP-sensing transcriptional pleiotropic repressor; CODY, DNA-binding, nucleotide-binding, transcript regulation, winged HTH motif.; 2.90A {Bacillus subtilis} SCOP: a.4.5.66
Probab=90.05 E-value=0.41 Score=35.87 Aligned_cols=33 Identities=6% Similarity=0.312 Sum_probs=30.9
Q ss_pred cHHHHHHHhhcCCChHHHHHHHHHHHhCCCceeee
Q 026766 36 WTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVV 70 (233)
Q Consensus 36 w~~dik~~t~~~l~~~~v~k~LK~Le~k~lIK~vk 70 (233)
..++|.++. ++...+|+++|+.|++.|+|...+
T Consensus 45 s~~eLa~~l--gVSr~tVr~al~~L~~~GlI~~~~ 77 (102)
T 2b0l_A 45 VASKIADRV--GITRSVIVNALRKLESAGVIESRS 77 (102)
T ss_dssp CHHHHHHHH--TCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred CHHHHHHHH--CcCHHHHHHHHHHHHHCCCEEEEe
Confidence 899999999 999999999999999999997754
No 221
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=89.97 E-value=1.6 Score=37.54 Aligned_cols=139 Identities=14% Similarity=0.181 Sum_probs=91.7
Q ss_pred CCChHHHHHHHHHHhhCCCcccHHHHHHHhhc-------CCC----hHHHHHHHHHHHhCCC-ceeeecccCCCeeeEEe
Q 026766 15 SLTDHERLIYDVIRSKQDMGIWTRDMKRELRV-------NLP----DNIVTKSIKSLQNKSL-IKEVVNIHSKGKKHLMA 82 (233)
Q Consensus 15 ~L~~~e~lVy~~I~~aG~~GIw~~dik~~t~~-------~l~----~~~v~k~LK~Le~k~l-IK~vksV~~~~rK~Yml 82 (233)
.+++..|..++.|-+.|- +.-.++++-... ... ...|+.+=++|..-++ |+.+++ +..++.+|.+
T Consensus 2 ~y~d~hR~fLQa~msrg~--l~~~~~~~l~~~~~~~~~~~~~~~~l~~~I~~IN~~L~~l~~~Ir~~~~-q~~g~~~y~l 78 (238)
T 3nw0_A 2 VMTDVHRRFLQLLMTHGV--LEEWDVKRLQTHCYKVHDRNATVDKLEDFINNINSVLESLYIEIKRGVT-EDDGRPIYAL 78 (238)
T ss_dssp CCCHHHHHHHHHHHHSSE--EEHHHHHHHHHHHHHHC--CCCCCCHHHHHHHHHHHHGGGTEEEEEEEC-TTTCCEEEEE
T ss_pred CcchHHHHHHHHHHcCCC--CCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHhhhcCcEEEEeec-CCCCCEEEEE
Confidence 467888999999998877 777776655411 111 2244444455555444 444443 3468999999
Q ss_pred eccccCCCcccCCcccCCCCCHHHHHHHHHHHHHHhhh-CCCCCHHHHHHHHHHhCCcccccCHHHHHHHHHHHhcCCeE
Q 026766 83 VEFEPSKEISGGAWYSEGSLDTEFIKVVKSQCLKQIIK-LKVATLEGISDSIKRSGAFKVDLTKQQIEEIVRALVLDNQI 161 (233)
Q Consensus 83 ~~lePs~eiTGG~wy~d~e~D~efI~~l~~~~~~~i~~-~~~~T~~~I~~~I~~~~i~~~~Ls~~di~~il~~Lv~Dg~i 161 (233)
.++.+++..-=++ .|..+-|+-++..+-..+.. .+..+.-++.+-.. .+....|+..+.+++|+.||-||=+
T Consensus 79 VN~~~d~~~klaT-----~yt~~Ei~~fk~lle~i~~s~~~~~s~~~~lnl~~--~~~~k~l~~~eae~lL~~lv~~gWl 151 (238)
T 3nw0_A 79 VNLATTSISKMAT-----DFAENELDLFRKALELIIDSETGFASSTNILNLVD--QLKGKKMRKKEAEQVLQKFVQNKWL 151 (238)
T ss_dssp EESSSCTTHHHHT-----TSCHHHHHHHHHHHHHHHHSSSSCEEHHHHHGGGT--TCSSSCCCHHHHHHHHHHHHHTTSE
T ss_pred EeCCCCHHHhhcc-----CCCHHHHHHHHHHHHHHHhCCCCceeHHHHHHHHh--hcccCCCCHHHHHHHHHHHHHhcch
Confidence 9999988766544 55566666666666666653 34555545443322 2233579999999999999999999
Q ss_pred EE
Q 026766 162 ME 163 (233)
Q Consensus 162 e~ 163 (233)
+.
T Consensus 152 ~~ 153 (238)
T 3nw0_A 152 IE 153 (238)
T ss_dssp EE
T ss_pred hh
Confidence 86
No 222
>3neu_A LIN1836 protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG, unknown function; 1.58A {Listeria innocua}
Probab=89.96 E-value=0.83 Score=35.01 Aligned_cols=48 Identities=21% Similarity=0.279 Sum_probs=37.9
Q ss_pred HHHHHHHHHhhCCCc-------c-cHHHHHHHhhcCCChHHHHHHHHHHHhCCCceee
Q 026766 20 ERLIYDVIRSKQDMG-------I-WTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEV 69 (233)
Q Consensus 20 e~lVy~~I~~aG~~G-------I-w~~dik~~t~~~l~~~~v~k~LK~Le~k~lIK~v 69 (233)
-..||+.|...=..| + ..++|..+. +++.++|+++|+.|+..|+|...
T Consensus 15 ~~~i~~~i~~~I~~g~~~~g~~Lps~~~La~~~--~vSr~tvr~Al~~L~~~G~i~~~ 70 (125)
T 3neu_A 15 YSQISDWMKKQMITGEWKGEDKLPSVREMGVKL--AVNPNTVSRAYQELERAGYIYAK 70 (125)
T ss_dssp HHHHHHHHHHHHHTTSSCTTCBCCCHHHHHHHH--TCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHHHHhCCCCCCCCCCCHHHHHHHH--CcCHHHHHHHHHHHHHCCeEEEe
Confidence 345677776543222 3 489999999 99999999999999999999764
No 223
>3tqn_A Transcriptional regulator, GNTR family; regulatory functions; 2.80A {Coxiella burnetii}
Probab=89.78 E-value=0.69 Score=34.79 Aligned_cols=47 Identities=21% Similarity=0.197 Sum_probs=36.6
Q ss_pred HHHHHHHHhhCCC-------cc-cHHHHHHHhhcCCChHHHHHHHHHHHhCCCceee
Q 026766 21 RLIYDVIRSKQDM-------GI-WTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEV 69 (233)
Q Consensus 21 ~lVy~~I~~aG~~-------GI-w~~dik~~t~~~l~~~~v~k~LK~Le~k~lIK~v 69 (233)
..||+.|...=.. -+ ..++|..+. +++.++|+++|+.|++.|+|...
T Consensus 12 ~~i~~~i~~~I~~g~~~~G~~lPs~~~La~~~--~vSr~tvr~al~~L~~~Gli~~~ 66 (113)
T 3tqn_A 12 QQLRDKIVEAIIDGSYVEGEMIPSIRKISTEY--QINPLTVSKAYQSLLDDNVIEKR 66 (113)
T ss_dssp HHHHHHHHHHHHHTSSCTTCEECCHHHHHHHH--TCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHHHcCCCCCCCcCcCHHHHHHHH--CcCHHHHHHHHHHHHHCCCEEEe
Confidence 4566666543222 23 688999999 99999999999999999999664
No 224
>2g7u_A Transcriptional regulator; ICLR family, structural genomics, PSI, protein structure initiative, midwest center for struc genomics; 2.30A {Rhodococcus SP}
Probab=89.78 E-value=0.25 Score=42.26 Aligned_cols=46 Identities=15% Similarity=0.114 Sum_probs=38.1
Q ss_pred HHHHHHHhh--CCCcccHHHHHHHhhcCCChHHHHHHHHHHHhCCCceee
Q 026766 22 LIYDVIRSK--QDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEV 69 (233)
Q Consensus 22 lVy~~I~~a--G~~GIw~~dik~~t~~~l~~~~v~k~LK~Le~k~lIK~v 69 (233)
..+.+++.- .+.++..+||.+++ +|+..++.|.|+.|++.|+|..-
T Consensus 15 r~l~iL~~l~~~~~~~~~~eia~~~--gl~~stv~r~l~~L~~~G~v~~~ 62 (257)
T 2g7u_A 15 RGFAVLLAFDAQRPNPTLAELATEA--GLSRPAVRRILLTLQKLGYVAGS 62 (257)
T ss_dssp HHHHHHHTCSSSCSSCBHHHHHHHH--TCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHhCCCCCCHHHHHHHH--CcCHHHHHHHHHHHHHCCCEEeC
Confidence 344555532 34689999999999 99999999999999999999763
No 225
>1p4w_A RCSB; solution structure, DNA binding domain, DNA binding protein; NMR {Erwinia amylovora} SCOP: a.4.6.2
Probab=89.71 E-value=0.78 Score=34.16 Aligned_cols=44 Identities=16% Similarity=0.240 Sum_probs=38.0
Q ss_pred CCCCChHHHHHHHHHHhhCCCcccHHHHHHHhhcCCChHHHHHHHHHHHh
Q 026766 13 SDSLTDHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQN 62 (233)
Q Consensus 13 ~~~L~~~e~lVy~~I~~aG~~GIw~~dik~~t~~~l~~~~v~k~LK~Le~ 62 (233)
...||+.|+.|+.++. .|...++|...+ +++.++|...++.+.+
T Consensus 32 ~~~Lt~re~~Vl~l~~----~G~s~~EIA~~L--~iS~~TV~~~l~ri~~ 75 (99)
T 1p4w_A 32 DKRLSPKESEVLRLFA----EGFLVTEIAKKL--NRSIKTISSQKKSAMM 75 (99)
T ss_dssp SSSCCHHHHHHHHHHH----HTCCHHHHHHHH--TSCHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHH----cCCCHHHHHHHH--CcCHHHHHHHHHHHHH
Confidence 5779999999998874 589999999999 9999998888777654
No 226
>1v4r_A Transcriptional repressor; helix-turn-helix, winged-helix, gene regulation; NMR {Streptomyces} SCOP: a.4.5.6
Probab=89.70 E-value=0.35 Score=35.48 Aligned_cols=48 Identities=13% Similarity=0.268 Sum_probs=37.4
Q ss_pred HHHHHHHHHhhCCCc-------c-cHHHHHHHhhcCCChHHHHHHHHHHHhCCCceee
Q 026766 20 ERLIYDVIRSKQDMG-------I-WTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEV 69 (233)
Q Consensus 20 e~lVy~~I~~aG~~G-------I-w~~dik~~t~~~l~~~~v~k~LK~Le~k~lIK~v 69 (233)
...||+.|...=-.| + ..++|..++ +++..+|+++|+.|++.|+|...
T Consensus 13 ~~~l~~~i~~~I~~~~l~~g~~lps~~eLa~~~--~vSr~tvr~al~~L~~~Gli~~~ 68 (102)
T 1v4r_A 13 YADVATHFRTLIKSGELAPGDTLPSVADIRAQF--GVAAKTVSRALAVLKSEGLVSSR 68 (102)
T ss_dssp HHHHHHHHHHHTTTTSCCTTSBCCCHHHHHHHS--SSCTTHHHHHTTTTTTSSCCEEE
T ss_pred HHHHHHHHHHHHHhCCCCCcCCCcCHHHHHHHH--CcCHHHHHHHHHHHHHCCCEEEe
Confidence 345666665433222 3 689999999 99999999999999999999764
No 227
>3qph_A TRMB, A global transcription regulator; transcriptional regulator; HET: SUC; 2.99A {Pyrococcus furiosus}
Probab=89.62 E-value=0.0067 Score=55.07 Aligned_cols=61 Identities=21% Similarity=0.232 Sum_probs=51.1
Q ss_pred CCChHHHHHHHHHHhhCCCcccHHHHHHHhhcCCChHHHHHHHHHHHhCCCceeeecccCCCeeeEEee
Q 026766 15 SLTDHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVVNIHSKGKKHLMAV 83 (233)
Q Consensus 15 ~L~~~e~lVy~~I~~aG~~GIw~~dik~~t~~~l~~~~v~k~LK~Le~k~lIK~vksV~~~~rK~Yml~ 83 (233)
+|++.|..||..+-..|. ....+|.+.+ ++|++.|..+|+.|+++|||.... .+.+.|...
T Consensus 15 Gls~~ea~vY~~Ll~~g~--~t~~eia~~~--gv~~~~Vy~~L~~L~~~GlV~~~~----g~p~~y~av 75 (342)
T 3qph_A 15 GFTKYEILTYWTLLVYGP--STAKEISTKS--GIPYNRVYDTISSLKLRGFVTEIE----GTPKVYAAY 75 (342)
T ss_dssp HHHHHTTSCSHHHHHHHH--HHHSCCSSST--TSSSCSCCHHHHHHHHHTSEEEEC----CTTCEEEEC
T ss_pred CCCHHHHHHHHHHHHcCC--CCHHHHHHHH--CcCHHHHHHHHHHHHHCCCEEEEc----CceeEEEEc
Confidence 578888899999988876 7889999999 999999999999999999998763 234556543
No 228
>1xmk_A Double-stranded RNA-specific adenosine deaminase; winged helix-turn-helix, RNA editing, interferon, ADAR1, hydrolase; 0.97A {Homo sapiens} SCOP: a.4.5.19
Probab=89.47 E-value=0.57 Score=34.01 Aligned_cols=49 Identities=12% Similarity=0.226 Sum_probs=43.6
Q ss_pred HHHHHHHHHHhhhCCCCCHHHHHHHHHHhCCcccccCHH-HHHHHHHHHhcCCeEEEE
Q 026766 108 KVVKSQCLKQIIKLKVATLEGISDSIKRSGAFKVDLTKQ-QIEEIVRALVLDNQIMEV 164 (233)
Q Consensus 108 ~~l~~~~~~~i~~~~~~T~~~I~~~I~~~~i~~~~Ls~~-di~~il~~Lv~Dg~ie~v 164 (233)
...++.++.||.+++..|+.+|++.+. +|.. .|.+.|..|.-||.|+..
T Consensus 10 ~~~~~~IL~~Lk~~g~~ta~eiA~~Lg--------it~~~aVr~hL~~Le~eGlV~~~ 59 (79)
T 1xmk_A 10 AEIKEKICDYLFNVSDSSALNLAKNIG--------LTKARDINAVLIDMERQGDVYRQ 59 (79)
T ss_dssp HHHHHHHHHHHHHTCCEEHHHHHHHHC--------GGGHHHHHHHHHHHHHTTSEEEE
T ss_pred hhHHHHHHHHHHHcCCcCHHHHHHHcC--------CCcHHHHHHHHHHHHHCCCEEec
Confidence 477899999999999999999998763 7778 999999999999999954
No 229
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=89.31 E-value=0.96 Score=39.00 Aligned_cols=70 Identities=14% Similarity=0.156 Sum_probs=45.8
Q ss_pred CCCCChHHHHHHHHHHh---hCCCcccH-------HHHHHHhhcCCCh---HHHHHHHHHHHhCCCceeeecccCCCeee
Q 026766 13 SDSLTDHERLIYDVIRS---KQDMGIWT-------RDMKRELRVNLPD---NIVTKSIKSLQNKSLIKEVVNIHSKGKKH 79 (233)
Q Consensus 13 ~~~L~~~e~lVy~~I~~---aG~~GIw~-------~dik~~t~~~l~~---~~v~k~LK~Le~k~lIK~vksV~~~~rK~ 79 (233)
+.+|++.++.++..|.. .|+..+.. ++|...+ +..+ +.+..+|+.|+..|+|..... ...++..
T Consensus 281 ~~~l~~~~~~il~ai~~~~~~g~~~~~~~~l~~~~~~~~~~~--g~~~~~~~~~~~~l~~L~~~gli~~~~~-~~~~~g~ 357 (386)
T 2qby_A 281 ILTLPFHSKLVLMAVVSISSEENVVSTTGAVYETYLNICKKL--GVEAVTQRRVSDIINELDMVGILTAKVV-NRGRYGK 357 (386)
T ss_dssp HHTSCHHHHHHHHHHHHHC-----CEEHHHHHHHHHHHHHHH--TCCCCCHHHHHHHHHHHHHHTSEEEEEC-CCTTSCC
T ss_pred HHcCCHHHHHHHHHHHHHHhcCCCceeHHHHHHHHHHHHHhc--CCCCCCHHHHHHHHHHHHhCCCEEEEee-cCCCCCC
Confidence 35788999999988875 45554556 5556667 5544 999999999999999987543 2123334
Q ss_pred EEeecc
Q 026766 80 LMAVEF 85 (233)
Q Consensus 80 Yml~~l 85 (233)
|.++.|
T Consensus 358 y~~~~l 363 (386)
T 2qby_A 358 TKEIGL 363 (386)
T ss_dssp CEEEEE
T ss_pred eEEEEe
Confidence 544444
No 230
>3by6_A Predicted transcriptional regulator; structural genomics, PSI-2, MCSG, structure initiative, midwest center for structural genomic binding; 2.20A {Oenococcus oeni}
Probab=89.25 E-value=0.65 Score=35.78 Aligned_cols=48 Identities=19% Similarity=0.291 Sum_probs=38.4
Q ss_pred HHHHHHHHHhhCCCc-------c-cHHHHHHHhhcCCChHHHHHHHHHHHhCCCceee
Q 026766 20 ERLIYDVIRSKQDMG-------I-WTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEV 69 (233)
Q Consensus 20 e~lVy~~I~~aG~~G-------I-w~~dik~~t~~~l~~~~v~k~LK~Le~k~lIK~v 69 (233)
-..||..|...=..| + ..++|..+. +++.++|+++|+.|+..|+|...
T Consensus 13 ~~~i~~~l~~~I~~g~~~~G~~lPse~~La~~~--~vSr~tvr~Al~~L~~~Gli~~~ 68 (126)
T 3by6_A 13 YLQLVDRIKNEVATDVLSANDQLPSVRETALQE--KINPNTVAKAYKELEAQKVIRTI 68 (126)
T ss_dssp HHHHHHHHHHHHHTTSSCTTCEECCHHHHHHHH--TCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHHHHHHHHHhCCCCCCCcCcCHHHHHHHH--CcCHHHHHHHHHHHHHCCCEEEe
Confidence 345777776543333 3 689999999 99999999999999999999664
No 231
>2rnj_A Response regulator protein VRAR; HTH LUXR-type domain, DNA binding domain, activator, antibiotic resistance, cytoplasm, DNA-binding; NMR {Staphylococcus aureus}
Probab=89.15 E-value=0.36 Score=34.76 Aligned_cols=48 Identities=17% Similarity=0.212 Sum_probs=39.8
Q ss_pred CCCCCCCChHHHHHHHHHHhhCCCcccHHHHHHHhhcCCChHHHHHHHHHHHhC
Q 026766 10 NAPSDSLTDHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNK 63 (233)
Q Consensus 10 ~~~~~~L~~~e~lVy~~I~~aG~~GIw~~dik~~t~~~l~~~~v~k~LK~Le~k 63 (233)
...+..||+.|+.|+.++ -.|...++|...+ +++.++|.+.++.+.+|
T Consensus 24 ~~~l~~Lt~~e~~vl~l~----~~g~s~~eIA~~l--~is~~tV~~~l~r~~~k 71 (91)
T 2rnj_A 24 AELYEMLTEREMEILLLI----AKGYSNQEIASAS--HITIKTVKTHVSNILSK 71 (91)
T ss_dssp -CTGGGCCSHHHHHHHHH----HTTCCTTHHHHHH--TCCHHHHHHHHHHHHHH
T ss_pred HHHHhcCCHHHHHHHHHH----HcCCCHHHHHHHH--CcCHHHHHHHHHHHHHH
Confidence 345678999999999886 3689999999999 99999998888776543
No 232
>2ek5_A Predicted transcriptional regulators; helix-turn-helix, interwined alpha helices; 2.20A {Corynebacterium glutamicum atcc 13032} PDB: 2du9_A
Probab=88.83 E-value=0.68 Score=35.93 Aligned_cols=46 Identities=11% Similarity=0.122 Sum_probs=36.3
Q ss_pred HHHHHHHhhCCCc-------c-cHHHHHHHhhcCCChHHHHHHHHHHHhCCCceee
Q 026766 22 LIYDVIRSKQDMG-------I-WTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEV 69 (233)
Q Consensus 22 lVy~~I~~aG~~G-------I-w~~dik~~t~~~l~~~~v~k~LK~Le~k~lIK~v 69 (233)
.||+.|...=..| + ..++|..+. +++.++|+++|+.|+..|+|...
T Consensus 8 ~i~~~i~~~I~~g~l~~G~~LPse~~La~~~--gvSr~tVr~Al~~L~~~Gli~~~ 61 (129)
T 2ek5_A 8 QIASLIEDSIVDGTLSIDQRVPSTNELAAFH--RINPATARNGLTLLVEAGILYKK 61 (129)
T ss_dssp HHHHHHHHHHHTTSSCTTSCBCCHHHHHHHT--TCCHHHHHHHHHHHHTTTSEEEE
T ss_pred HHHHHHHHHHHhCCCCCCCcCcCHHHHHHHH--CcCHHHHHHHHHHHHHCCcEEEe
Confidence 5666665432222 3 688999999 99999999999999999999764
No 233
>1t6s_A Conserved hypothetical protein; A winged helix-turn-helix, structural genomics, BSGC structu by NIH, protein structure initiative, PSI; 1.95A {Chlorobium tepidum tls} SCOP: a.4.5.60 a.4.5.60
Probab=88.82 E-value=0.35 Score=39.73 Aligned_cols=55 Identities=18% Similarity=0.173 Sum_probs=46.9
Q ss_pred CChHHHHHHHHHHhhCCCcccHHHHHHHhhcCCChHHHHHHHHHHHhCCCceeeecccCCCe
Q 026766 16 LTDHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVVNIHSKGK 77 (233)
Q Consensus 16 L~~~e~lVy~~I~~aG~~GIw~~dik~~t~~~l~~~~v~k~LK~Le~k~lIK~vksV~~~~r 77 (233)
||.-...+|.+|...+. |.+.+|.+.. |+. ++.+++.|.++|||+++..-..++|
T Consensus 92 LS~aaLEtLaiIay~qP--iTR~eI~~ir--Gv~---~~~~v~~L~e~glI~e~g~~~~~GR 146 (162)
T 1t6s_A 92 LSRSMLEVLAVVAWHQP--VTKGEIQQIR--GAS---PDYSIDRLLARGLIEVRGRADSPGR 146 (162)
T ss_dssp HHHHHHHHHHHHHHHCS--EEHHHHHHHH--TCC---CCSHHHHHHHTTSEEEEEECSSTTC
T ss_pred cCHHHHHHHHHHHHcCC--cCHHHHHHHH--CCC---HHHHHHHHHHCCCEEEccccCCCCC
Confidence 55555669999999876 9999999999 887 8889999999999999876665676
No 234
>1lva_A Selenocysteine-specific elongation factor; winged-helix, translation; 2.12A {Moorella thermoacetica} SCOP: a.4.5.35 a.4.5.35 a.4.5.35 a.4.5.35 PDB: 2uwm_A 2ply_A 1wsu_A
Probab=88.54 E-value=3.1 Score=35.69 Aligned_cols=111 Identities=8% Similarity=0.090 Sum_probs=81.3
Q ss_pred CCChHHHHHHH----HHHhhCCCcccHHHHHHHhhcCCChHHHHHHHHHHHhCCCceeeecccCCCeeeEEeeccccCCC
Q 026766 15 SLTDHERLIYD----VIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVVNIHSKGKKHLMAVEFEPSKE 90 (233)
Q Consensus 15 ~L~~~e~lVy~----~I~~aG~~GIw~~dik~~t~~~l~~~~v~k~LK~Le~k~lIK~vksV~~~~rK~Yml~~lePs~e 90 (233)
.+++++..+.+ .+.++|=.--|.+||-..+ +++...+..+|+.|...|.|-++. .-+|
T Consensus 134 ~~~~~~~~~~~~i~~~~~~~g~~pp~~~dl~~~l--~~~~~~~~~~l~~l~~~g~lv~l~------~~~~---------- 195 (258)
T 1lva_A 134 SFSETQKKLLKDLEDKYRVSRWQPPSFKEVAGSF--NLDPSELEELLHYLVREGVLVKIN------DEFY---------- 195 (258)
T ss_dssp CCCHHHHHHHHHHHHHHHHHTTSCCBHHHHHHHT--TCCHHHHHHHHHHHHHTTSEEESS------SSBE----------
T ss_pred CCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHhHh--CCCHHHHHHHHHHHHHCCCEEEec------CCeE----------
Confidence 46665544443 3445554446999999999 999999999999999999886643 1233
Q ss_pred cccCCcccCCCCCHHHHHHHHHHHHHHhhhCCCCCHHHHHHHHHHhCCcccccCHHHHHHHHHHHhcCCeEEE
Q 026766 91 ISGGAWYSEGSLDTEFIKVVKSQCLKQIIKLKVATLEGISDSIKRSGAFKVDLTKQQIEEIVRALVLDNQIME 163 (233)
Q Consensus 91 iTGG~wy~d~e~D~efI~~l~~~~~~~i~~~~~~T~~~I~~~I~~~~i~~~~Ls~~di~~il~~Lv~Dg~ie~ 163 (233)
|+.+.++.+.+.+..++ .++..|+.+..+-+ | +|=.=.-.||+-|=-.|...+
T Consensus 196 -----------~~~~~~~~~~~~l~~~~-~~~~it~a~~Rd~l---g-----~SRK~aIplLE~~Dr~g~TrR 248 (258)
T 1lva_A 196 -----------WHRQALGEAREVIKNLA-STGPFGLAEARDAL---G-----SSRKYVLPLLEYLDQVKFTRR 248 (258)
T ss_dssp -----------EEHHHHHHHHHHHHHHH-TTSCBCHHHHHHHH---T-----CCHHHHHHHHHHHHHTTSEEE
T ss_pred -----------EcHHHHHHHHHHHHHHH-hcCCcCHHHHHHHh---C-----CcHHHHHHHHHHHhhcCceee
Confidence 46788999999999999 99999999988776 3 333444566776655565544
No 235
>2bgc_A PRFA; bacterial infection, human pathogen, transcriptional regulat transcription; HET: PR3; 2.3A {Listeria monocytogenes} SCOP: a.4.5.4 b.82.3.3 PDB: 2beo_A* 1omi_A
Probab=88.51 E-value=0.47 Score=38.94 Aligned_cols=33 Identities=12% Similarity=0.246 Sum_probs=30.8
Q ss_pred cccHHHHHHHhhcCCCh-HHHHHHHHHHHhCCCcee
Q 026766 34 GIWTRDMKRELRVNLPD-NIVTKSIKSLQNKSLIKE 68 (233)
Q Consensus 34 GIw~~dik~~t~~~l~~-~~v~k~LK~Le~k~lIK~ 68 (233)
-+.+.+|..-+ |++. .+|+|+|+.|+++|+|+.
T Consensus 169 ~~t~~~lA~~l--G~sr~etvsR~l~~l~~~glI~~ 202 (238)
T 2bgc_A 169 NLTMQELGYSS--GIAHSSAVSRIISKLKQEKVIVY 202 (238)
T ss_dssp CCCHHHHHHHT--TCCCHHHHHHHHHHHHHTTSEEE
T ss_pred cCCHHHHHHHh--CCChHHHHHHHHHHHHHCCCEEe
Confidence 57899999999 9999 599999999999999976
No 236
>2dk8_A DNA-directed RNA polymerase III 39 kDa polypeptide; structural genomics, RNA_POL_RPC34 domain, RNA polymerase III C39 subunit, NPPSFA; NMR {Mus musculus} SCOP: a.4.5.85
Probab=88.38 E-value=1.8 Score=31.72 Aligned_cols=66 Identities=15% Similarity=0.136 Sum_probs=54.3
Q ss_pred hHHHHHHHHHHhhCCCcccHHHHHHHhhcCCChHHHHHHHHHHHhCCCceeeecccCCCeeeEEeeccccC
Q 026766 18 DHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVVNIHSKGKKHLMAVEFEPS 88 (233)
Q Consensus 18 ~~e~lVy~~I~~aG~~GIw~~dik~~t~~~l~~~~v~k~LK~Le~k~lIK~vksV~~~~rK~Yml~~lePs 88 (233)
+-|..|+.+++..- +||...+|...+ ++|+..+.-.+|..|-+.|-|.-.+ .++.-+|-+.+-.||
T Consensus 14 ~ie~~IL~l~~~~P-~GItd~~L~~~~-p~~~~~~r~~aIN~LL~~gkiel~K---~~~~liYr~k~~~~~ 79 (81)
T 2dk8_A 14 EIENRIIELCHQFP-HGITDQVIQNEM-PHIEAQQRAVAINRLLSMGQLDLLR---SNTGLLYRIKDSGPS 79 (81)
T ss_dssp HHHHHHHHHHHHCS-SCEEHHHHHHHC-TTSCHHHHHHHHHHHHHHTSEEEEE---CSSSEEEEECCCCCC
T ss_pred HHHHHHHHHHHhCC-CCCCHHHHHHHC-CCCCHHHHHHHHHHHHHcCCeEEEe---cCCeEEEEecccccC
Confidence 34677999998874 899999999998 5789999999999999999997554 456778888775544
No 237
>1j5y_A Transcriptional regulator, biotin repressor famil; structural genomics, TM1602, BIOT repressor family, JCSG, conserved hypothetical protein; 2.30A {Thermotoga maritima} SCOP: a.4.5.1 d.94.2.1
Probab=88.36 E-value=0.89 Score=37.03 Aligned_cols=46 Identities=13% Similarity=0.250 Sum_probs=39.2
Q ss_pred HHHHHHHHHhhCCCcccHHHHHHHhhcCCChHHHHHHHHHHHhCCC-cee
Q 026766 20 ERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSL-IKE 68 (233)
Q Consensus 20 e~lVy~~I~~aG~~GIw~~dik~~t~~~l~~~~v~k~LK~Le~k~l-IK~ 68 (233)
...|+.++.+.+ ..+..++|.+++ +++.++|.+-|+.|++.|+ |..
T Consensus 23 ~~~Il~~L~~~~-~~~s~~eLa~~l--~vS~~Ti~rdi~~L~~~G~~I~~ 69 (187)
T 1j5y_A 23 LKSIVRILERSK-EPVSGAQLAEEL--SVSRQVIVQDIAYLRSLGYNIVA 69 (187)
T ss_dssp HHHHHHHHHHCS-SCBCHHHHHHHH--TSCHHHHHHHHHHHHHHTCCCEE
T ss_pred HHHHHHHHHHcC-CCcCHHHHHHHH--CcCHHHHHHHHHHHHHCCCeEEE
Confidence 456777777543 359999999999 9999999999999999999 865
No 238
>3r4k_A Transcriptional regulator, ICLR family; DNA/RNA-binding 3-helical bundle, profilin-like, structural joint center for structural genomics, JCSG; 2.46A {Ruegeria SP}
Probab=88.30 E-value=0.26 Score=42.40 Aligned_cols=35 Identities=17% Similarity=0.287 Sum_probs=33.1
Q ss_pred CCcccHHHHHHHhhcCCChHHHHHHHHHHHhCCCcee
Q 026766 32 DMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKE 68 (233)
Q Consensus 32 ~~GIw~~dik~~t~~~l~~~~v~k~LK~Le~k~lIK~ 68 (233)
+.++..+||.+++ +|+.+++.|.|+.|++.|+|..
T Consensus 19 ~~~lsl~eia~~l--gl~ksT~~RlL~tL~~~G~v~~ 53 (260)
T 3r4k_A 19 RLEIGLSDLTRLS--GMNKATVYRLMSELQEAGFVEQ 53 (260)
T ss_dssp BSEEEHHHHHHHH--CSCHHHHHHHHHHHHHTTSEEE
T ss_pred CCCCCHHHHHHHH--CcCHHHHHHHHHHHHHCCCEEE
Confidence 4789999999999 9999999999999999999965
No 239
>2pi2_A Replication protein A 32 kDa subunit; FULL-length RPA14/32, ssDNA binding protein, OB-fold, dioxan replication, DNA binding protein; 2.00A {Homo sapiens} SCOP: b.40.4.3 PDB: 2z6k_A 1dpu_A 1z1d_A
Probab=88.30 E-value=0.09 Score=46.05 Aligned_cols=52 Identities=19% Similarity=0.341 Sum_probs=0.0
Q ss_pred CCChHHHHHHHHHHhh-CCCcccHHHHHHHhhcC-CChHHHHHHHHHHHhCCCcee
Q 026766 15 SLTDHERLIYDVIRSK-QDMGIWTRDMKRELRVN-LPDNIVTKSIKSLQNKSLIKE 68 (233)
Q Consensus 15 ~L~~~e~lVy~~I~~a-G~~GIw~~dik~~t~~~-l~~~~v~k~LK~Le~k~lIK~ 68 (233)
+|++-++.||++|++. .++||-..+|.+++ + ++..+|+++|..|.+.|+|=+
T Consensus 204 ~~~~~~~~Vl~~i~~~~~~~Gi~~~~I~~~l--~~~~~~~v~~al~~L~~eG~IYs 257 (270)
T 2pi2_A 204 GLTVAQNQVLNLIKACPRPEGLNFQDLKNQL--KHMSVSSIKQAVDFLSNEGHIYS 257 (270)
T ss_dssp --------------------------------------------------------
T ss_pred CCCHHHHHHHHHHHhCCCccCCCHHHHHHHh--cCCCHHHHHHHHHHHHhCCEEec
Confidence 5777889999999985 56899999999998 5 999999999999999999943
No 240
>2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis}
Probab=88.26 E-value=1.6 Score=28.87 Aligned_cols=46 Identities=13% Similarity=0.118 Sum_probs=37.2
Q ss_pred CCCCCCChHHHHHHHHHHhhCCCcccHHHHHHHhhcCCChHHHHHHHHHHH
Q 026766 11 APSDSLTDHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQ 61 (233)
Q Consensus 11 ~~~~~L~~~e~lVy~~I~~aG~~GIw~~dik~~t~~~l~~~~v~k~LK~Le 61 (233)
..+..||+.++.|+.+.. -.|...++|...+ |++.++|.+.++...
T Consensus 11 ~~l~~L~~~~r~il~l~~---~~g~s~~eIA~~l--gis~~tv~~~~~ra~ 56 (70)
T 2o8x_A 11 TMIADLTTDQREALLLTQ---LLGLSYADAAAVC--GCPVGTIRSRVARAR 56 (70)
T ss_dssp TTTTSSCHHHHHHHHHHH---TSCCCHHHHHHHH--TSCHHHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHH---HcCCCHHHHHHHH--CcCHHHHHHHHHHHH
Confidence 357789999999987765 3568999999999 999998877766543
No 241
>1ldj_A Cullin homolog 1, CUL-1; cullin, ROC1, HRT1, zinc ring finger, ligase, ubiquitin, ubiquitination, SCF; 3.00A {Homo sapiens} SCOP: a.4.5.34 a.118.17.1 e.40.1.1 PDB: 1u6g_A 1ldk_A 1ldk_B 3rtr_A
Probab=87.66 E-value=0.86 Score=45.33 Aligned_cols=144 Identities=8% Similarity=0.096 Sum_probs=92.3
Q ss_pred CCChHHHHHHHHHHhhCCCcccHHHHHHHhhcCCChHHHHHHHHHHHhCCCceeee--------cccCCCeeeEEeeccc
Q 026766 15 SLTDHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVV--------NIHSKGKKHLMAVEFE 86 (233)
Q Consensus 15 ~L~~~e~lVy~~I~~aG~~GIw~~dik~~t~~~l~~~~v~k~LK~Le~k~lIK~vk--------sV~~~~rK~Yml~~le 86 (233)
.+|.-|..|+-+..+. ..+...+|...| +|+...+.++|..|...|++...+ .|. ++-...+=.++.
T Consensus 586 ~vs~~Qa~iLllFn~~--~~~t~~ei~~~t--~i~~~~l~r~L~~l~k~~iL~~~~~~~~~~~~~~~-~~~~f~lN~~F~ 660 (760)
T 1ldj_A 586 QASTFQMAILLQYNTE--DAYTVQQLTDST--QIKMDILAQVLQILLKSKLLVLEDENANVDEVELK-PDTLIKLYLGYK 660 (760)
T ss_dssp ECCHHHHHHHHGGGSS--SEEEHHHHHHHT--CCCHHHHHHHHHHHHHTTTEECSCTTCCTTTCCCC-TTCEEEECSSCC
T ss_pred EEcHHHHHHHHHhcCC--CCcCHHHHHHHH--CcCHHHHHHHHHHHHHCCcceeCCCccccccCCCC-CCCEEEeecccc
Confidence 4677888888666654 458899999999 999999999999999999886321 011 111111111111
Q ss_pred cCC---CcccCCccc---------CCCCCHHHHHHHHHHHHHHhhhCCCCCHHHHHHHHHH-hCCcccccCHHHHHHHHH
Q 026766 87 PSK---EISGGAWYS---------EGSLDTEFIKVVKSQCLKQIIKLKVATLEGISDSIKR-SGAFKVDLTKQQIEEIVR 153 (233)
Q Consensus 87 Ps~---eiTGG~wy~---------d~e~D~efI~~l~~~~~~~i~~~~~~T~~~I~~~I~~-~~i~~~~Ls~~di~~il~ 153 (233)
... .|.. +.=. ..+.+.+=...|..+|.+.++.+...+-+++..-+.+ .. .+...++.+|+.-|+
T Consensus 661 ~k~~ri~i~~-~~~~e~~~e~~~~~~~v~~dR~~~i~AaIVRIMK~rK~l~h~~Lv~ev~~ql~-~rF~p~~~~IKk~Ie 738 (760)
T 1ldj_A 661 NKKLRVNINV-PMKTEQKQEQETTHKNIEEDRKLLIQAAIVRIMKMRKVLKHQQLLGEVLTQLS-SRFKPRVPVIKKCID 738 (760)
T ss_dssp CSSSSBCCCC-CCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSEEEHHHHHHHHHHHHT-TTCCCCHHHHHHHHH
T ss_pred CCceEEEecC-ccccccchhhhhHHHHHHHHHHhHheeeehhhhhccCCCcHHHHHHHHHHHHh-ccCCCCHHHHHHHHH
Confidence 100 0000 0000 0111222223677778888888888888888775543 32 345689999999999
Q ss_pred HHhcCCeEEEEe
Q 026766 154 ALVLDNQIMEVK 165 (233)
Q Consensus 154 ~Lv~Dg~ie~v~ 165 (233)
.|+=-+-|++..
T Consensus 739 ~LIereYl~R~~ 750 (760)
T 1ldj_A 739 ILIEKEYLERVD 750 (760)
T ss_dssp HHHHTTSEEECS
T ss_pred HHhhccceeeCC
Confidence 999999999853
No 242
>3u0k_A Rcamp; fluorescent protein, calcium binding, EF-hand, genetically E calcium indicator; HET: NFA CRK; 2.10A {Entacmaea quadricolor}
Probab=87.27 E-value=2.1 Score=40.35 Aligned_cols=120 Identities=13% Similarity=0.244 Sum_probs=74.3
Q ss_pred CCCCChHH----HHHHHHHHhhCCCcccHHHHHHHh---hcCCChHHHHHHHHHHHhC--CCceeeecccCCCeeeEEee
Q 026766 13 SDSLTDHE----RLIYDVIRSKQDMGIWTRDMKREL---RVNLPDNIVTKSIKSLQNK--SLIKEVVNIHSKGKKHLMAV 83 (233)
Q Consensus 13 ~~~L~~~e----~lVy~~I~~aG~~GIw~~dik~~t---~~~l~~~~v~k~LK~Le~k--~lIK~vksV~~~~rK~Yml~ 83 (233)
...|+++| +.+++.++..|+-=|...||+.-+ +.+++...+.+.++.+-.. |.|-- .-.- -++.
T Consensus 293 ~E~Lt~EEI~ELREaF~~fDkDgdG~IS~eELk~aLrsLG~~~TeeEI~~Lf~~~D~DgDG~IdF-eEFl------~lms 365 (440)
T 3u0k_A 293 RDQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGDGTIDF-PEFL------IMMA 365 (440)
T ss_dssp CBCCCHHHHHHHHHHHHHHCTTCSSEECHHHHHHHHHHTTCCCCHHHHHHHHHHHCSSCSSSEEH-HHHH------HHHH
T ss_pred HhhhhHHHHHHHHHHHHHHcCCCCCEECHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCCCCcCcH-HHHH------HHHH
Confidence 56788876 456777777888889999998765 4467788888888877432 22210 0000 0000
Q ss_pred ccccCCCcccCCcccCCCCCHHHHHHHHHHHHHHhh--hCCCCCHHHHHHHHHHhCCcccccCHHHHHHHHHHHhcC
Q 026766 84 EFEPSKEISGGAWYSEGSLDTEFIKVVKSQCLKQII--KLKVATLEGISDSIKRSGAFKVDLTKQQIEEIVRALVLD 158 (233)
Q Consensus 84 ~lePs~eiTGG~wy~d~e~D~efI~~l~~~~~~~i~--~~~~~T~~~I~~~I~~~~i~~~~Ls~~di~~il~~Lv~D 158 (233)
. ...+..-+ +.|++ +++.+. ..+++|.+|+.+.+++.|. .|+.++++.+++.+=.|
T Consensus 366 ~-----------~lk~~d~e----eeLre-AFk~fDkDgdG~IS~eELr~vL~~lGe---~LSdeEIdeLfke~D~D 423 (440)
T 3u0k_A 366 R-----------KMKDTDSE----EEIRE-AFRVFDKDGNGYISAAELRHVMTNLGE---KLTDEEVDEMIREADID 423 (440)
T ss_dssp T-----------C------C----HHHHH-HHHHHCTTCSSEECHHHHHHHHHHHTC---CCCHHHHHHHHHHHCTT
T ss_pred H-----------HhcCCChH----HHHHH-HHHHHCCCCcCcCCHHHHHHHHHHhCC---CCCHHHHHHHHHHhCCC
Confidence 0 00000011 22333 234443 4689999999999999884 69999999999987544
No 243
>1tty_A Sigma-A, RNA polymerase sigma factor RPOD; helix-turn-helix, transcription; NMR {Thermotoga maritima} SCOP: a.4.13.2
Probab=86.98 E-value=1.4 Score=31.36 Aligned_cols=46 Identities=7% Similarity=0.042 Sum_probs=37.8
Q ss_pred CCCCCChHHHHHHHHHHh-hCCCcccHHHHHHHhhcCCChHHHHHHHHH
Q 026766 12 PSDSLTDHERLIYDVIRS-KQDMGIWTRDMKRELRVNLPDNIVTKSIKS 59 (233)
Q Consensus 12 ~~~~L~~~e~lVy~~I~~-aG~~GIw~~dik~~t~~~l~~~~v~k~LK~ 59 (233)
.+..||+.|+.|+.+..- .++.|...++|...+ |++..+|.+.+..
T Consensus 15 ~l~~L~~~er~vl~l~~~l~~~~~~s~~EIA~~l--gis~~tV~~~~~r 61 (87)
T 1tty_A 15 VLKTLSPREAMVLRMRYGLLDGKPKTLEEVGQYF--NVTRERIRQIEVK 61 (87)
T ss_dssp HHTTSCHHHHHHHHHHHTTTTSSCCCHHHHHHHH--TCCHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHccCCCCCCCHHHHHHHH--CCCHHHHHHHHHH
Confidence 456899999999988763 677899999999999 9998887665543
No 244
>2ovk_B RLC, myosin regulatory light chain LC-2, mantle muscle; rigor-like, squid, contractIle protein; 2.60A {Todarodes pacificus} PDB: 2ekv_B 2ekw_B 2oy6_B* 3i5f_B* 3i5g_B 3i5h_B 3i5i_B
Probab=86.91 E-value=4.6 Score=29.96 Aligned_cols=120 Identities=12% Similarity=0.153 Sum_probs=67.2
Q ss_pred CCCCCCCCCChHHH----HHHHHHHhhCCCcccHHHHHHHh---hcCCChHHHHHHHHHHHhCCCceeeecccCCCeeeE
Q 026766 8 DSNAPSDSLTDHER----LIYDVIRSKQDMGIWTRDMKREL---RVNLPDNIVTKSIKSLQNKSLIKEVVNIHSKGKKHL 80 (233)
Q Consensus 8 ~~~~~~~~L~~~e~----lVy~~I~~aG~~GIw~~dik~~t---~~~l~~~~v~k~LK~Le~k~lIK~vksV~~~~rK~Y 80 (233)
+.+.....|++++. .++..+...|+--|...+++.-+ |.+++...+...++.. .|.|----=+.
T Consensus 2 e~~~~~~~l~~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~~~--~g~i~~~eF~~------- 72 (153)
T 2ovk_B 2 EEAPRRVKLSQRQMQELKEAFTMIDQDRDGFIGMEDLKDMFSSLGRVPPDDELNAMLKEC--PGQLNFTAFLT------- 72 (153)
T ss_dssp -----CTTCCHHHHHHHHHHHHHHCCSTTTCCCHHHHHHHTTTTTSCCCHHHHHHHHHHS--SSCCCSHHHHH-------
T ss_pred CCCcccCCCCHHHHHHHHHHHHHhCCCCCCeECHHHHHHHHHHhCCCCCHHHHHHHHHHc--CCCCCHHHHHH-------
Confidence 34455677888653 34555556677679999999876 2356777777777765 22221000000
Q ss_pred EeeccccCCCcccCCcccCCCCCHHHHHHHHHHHHHHhh--hCCCCCHHHHHHHHHHhCCcccccCHHHHHHHHHHH
Q 026766 81 MAVEFEPSKEISGGAWYSEGSLDTEFIKVVKSQCLKQII--KLKVATLEGISDSIKRSGAFKVDLTKQQIEEIVRAL 155 (233)
Q Consensus 81 ml~~lePs~eiTGG~wy~d~e~D~efI~~l~~~~~~~i~--~~~~~T~~~I~~~I~~~~i~~~~Ls~~di~~il~~L 155 (233)
++....+ ...-. +.++. +++.+. ..+++|.+|+..+++..|. .++.++++.+++.+
T Consensus 73 ~~~~~~~-----------~~~~~----~~l~~-~F~~~D~d~~G~I~~~el~~~l~~~g~---~~~~~~~~~~~~~~ 130 (153)
T 2ovk_B 73 LFGEKVS-----------GTDPE----DALRN-AFSMFDEDGQGFIPEDYLKDLLENMGD---NFSKEEIKNVWKDA 130 (153)
T ss_dssp TTTTTTT-----------TCCCT----THHHH-HHHTTCSSCSSCCCHHHHHHHHHHSSS---CCCHHHHHHHHHHC
T ss_pred HHHHHhc-----------cCChH----HHHHH-HHHHHCCCCCCeEcHHHHHHHHHHcCC---CCCHHHHHHHHHHc
Confidence 0000000 00000 12222 233332 4689999999999999874 69999999998864
No 245
>2ia2_A Putative transcriptional regulator; SAD, PSI-2, structural genomics, structure initiative, midwest center for structural genomic transcription; 2.10A {Rhodococcus SP}
Probab=86.37 E-value=1 Score=38.61 Aligned_cols=45 Identities=16% Similarity=0.127 Sum_probs=38.2
Q ss_pred HHHHHHHhh--CCCcccHHHHHHHhhcCCChHHHHHHHHHHHhCCCcee
Q 026766 22 LIYDVIRSK--QDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKE 68 (233)
Q Consensus 22 lVy~~I~~a--G~~GIw~~dik~~t~~~l~~~~v~k~LK~Le~k~lIK~ 68 (233)
..+.+++.- ...++..+||.+++ +|+.+++.|.|+.|++.|+|..
T Consensus 22 r~l~iL~~l~~~~~~~~~~eia~~~--gl~~stv~r~l~tL~~~G~v~~ 68 (265)
T 2ia2_A 22 RGLAVIRCFDHRNQRRTLSDVARAT--DLTRATARRFLLTLVELGYVAT 68 (265)
T ss_dssp HHHHHHHTCCSSCSSEEHHHHHHHH--TCCHHHHHHHHHHHHHHTSEEE
T ss_pred HHHHHHHHHHhCCCCCCHHHHHHHH--CcCHHHHHHHHHHHHHCCCEEe
Confidence 455566542 34789999999999 9999999999999999999976
No 246
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=86.19 E-value=2.1 Score=33.33 Aligned_cols=55 Identities=7% Similarity=0.163 Sum_probs=47.4
Q ss_pred HHHHHHHHHhhh-CCCCCHHHHHHHHHHhCCcccccCHHHHHHHHHHHhcCCeEEEEee
Q 026766 109 VVKSQCLKQIIK-LKVATLEGISDSIKRSGAFKVDLTKQQIEEIVRALVLDNQIMEVKS 166 (233)
Q Consensus 109 ~l~~~~~~~i~~-~~~~T~~~I~~~I~~~~i~~~~Ls~~di~~il~~Lv~Dg~ie~v~~ 166 (233)
.-|..++++|.. .+.+|++||++.+++.+- .++..-|...|+.|+-.|.|.++..
T Consensus 14 ~qR~~Il~~L~~~~~h~sa~eI~~~l~~~~~---~is~aTVYR~L~~L~e~Glv~~~~~ 69 (139)
T 3mwm_A 14 RQRAAVSAALQEVEEFRSAQELHDMLKHKGD---AVGLTTVYRTLQSLADAGEVDVLRT 69 (139)
T ss_dssp HHHHHHHHHHTTCSSCEEHHHHHHHHHHTTC---CCCHHHHHHHHHHHHHTTSSEEEEC
T ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHhCC---CCCHHHHHHHHHHHHHCCCEEEEEc
Confidence 457788998876 468999999999998762 5899999999999999999999875
No 247
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=85.96 E-value=1.3 Score=34.91 Aligned_cols=54 Identities=11% Similarity=0.151 Sum_probs=46.5
Q ss_pred HHHHHHHHhhhCCCCCHHHHHHHHHHhCCcccccCHHHHHHHHHHHhcCCeEEEEee
Q 026766 110 VKSQCLKQIIKLKVATLEGISDSIKRSGAFKVDLTKQQIEEIVRALVLDNQIMEVKS 166 (233)
Q Consensus 110 l~~~~~~~i~~~~~~T~~~I~~~I~~~~i~~~~Ls~~di~~il~~Lv~Dg~ie~v~~ 166 (233)
-|..++++|...+.+|++||++.+++.+- .++..-|...|+.|+=.|.|.++..
T Consensus 20 qR~~Il~~l~~~~h~ta~ei~~~l~~~~~---~is~~TVYR~L~~L~e~Glv~~i~~ 73 (145)
T 3eyy_A 20 QRQLVLEAVDTLEHATPDDILGEVRKTAS---GINISTVYRTLELLEELGLVSHAHL 73 (145)
T ss_dssp HHHHHHHHHHHHSSBCHHHHHHHHHTTCT---TCCHHHHHHHHHHHHHHTSEEEEEC
T ss_pred HHHHHHHHHHhcCCCCHHHHHHHHHhhCC---CCCHhHHHHHHHHHHHCCcEEEEEe
Confidence 35678888876668999999999998763 5889999999999999999999874
No 248
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=85.30 E-value=3 Score=32.90 Aligned_cols=56 Identities=14% Similarity=0.209 Sum_probs=47.3
Q ss_pred HHHHHHHHHhhhC-CCCCHHHHHHHHHHhCCcccccCHHHHHHHHHHHhcCCeEEEEeeC
Q 026766 109 VVKSQCLKQIIKL-KVATLEGISDSIKRSGAFKVDLTKQQIEEIVRALVLDNQIMEVKSN 167 (233)
Q Consensus 109 ~l~~~~~~~i~~~-~~~T~~~I~~~I~~~~i~~~~Ls~~di~~il~~Lv~Dg~ie~v~~~ 167 (233)
.-|..++.+|... ..+|++||++.+++.+- .++..=|-..|+.|+-.|.|.++...
T Consensus 27 ~qR~~IL~~l~~~~~~~sa~ei~~~l~~~~~---~is~aTVYR~L~~L~e~Glv~~~~~~ 83 (150)
T 2xig_A 27 KQREEVVSVLYRSGTHLSPEEITHSIRQKDK---NTSISSVYRILNFLEKENFISVLETS 83 (150)
T ss_dssp HHHHHHHHHHHHCSSCBCHHHHHHHHHHHST---TCCHHHHHHHHHHHHHTTSEEEEEET
T ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHhCC---CCCHhhHHHHHHHHHHCCcEEEEEeC
Confidence 4566788888754 68999999999998763 57899999999999999999998754
No 249
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=85.27 E-value=2.5 Score=32.38 Aligned_cols=57 Identities=7% Similarity=0.222 Sum_probs=47.7
Q ss_pred HHHHHHHHHHhhhC-CCCCHHHHHHHHHHhCCcccccCHHHHHHHHHHHhcCCeEEEEeeC
Q 026766 108 KVVKSQCLKQIIKL-KVATLEGISDSIKRSGAFKVDLTKQQIEEIVRALVLDNQIMEVKSN 167 (233)
Q Consensus 108 ~~l~~~~~~~i~~~-~~~T~~~I~~~I~~~~i~~~~Ls~~di~~il~~Lv~Dg~ie~v~~~ 167 (233)
..-|..++++|.+. +.+|++||++.+++.+- .++..=|-..|+.|+-.|.|.++...
T Consensus 10 T~qR~~Il~~l~~~~~~~sa~ei~~~l~~~~~---~is~~TVYR~L~~L~e~Glv~~~~~~ 67 (131)
T 2o03_A 10 TRQRAAISTLLETLDDFRSAQELHDELRRRGE---NIGLTTVYRTLQSMASSGLVDTLHTD 67 (131)
T ss_dssp HHHHHHHHHHHHHCCSCEEHHHHHHHHHHTTC---CCCHHHHHHHHHHHHTTTSEEEEECT
T ss_pred CHHHHHHHHHHHhCCCCCCHHHHHHHHHHhCC---CCCHhhHHHHHHHHHHCCCEEEEEeC
Confidence 34567788888754 57999999999998762 58899999999999999999998753
No 250
>1p2f_A Response regulator; DRRB, OMPR/PHOB, transcription; HET: MSE; 1.80A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1 PDB: 3nns_A*
Probab=85.27 E-value=1.7 Score=34.68 Aligned_cols=47 Identities=13% Similarity=0.119 Sum_probs=41.8
Q ss_pred CCCChHHHHHHHHHHhhCCCcccHHHHHHHhhcC---CChHHHHHHHHHHHh
Q 026766 14 DSLTDHERLIYDVIRSKQDMGIWTRDMKRELRVN---LPDNIVTKSIKSLQN 62 (233)
Q Consensus 14 ~~L~~~e~lVy~~I~~aG~~GIw~~dik~~t~~~---l~~~~v~k~LK~Le~ 62 (233)
..||+-|..|+.++.+..++++..++|..++ + +..++|...++.|-+
T Consensus 144 ~~Lt~rE~~vl~~l~~~~~~~~s~~~Ia~~l--~~~~~s~~tv~~~i~~l~~ 193 (220)
T 1p2f_A 144 IHLPKKEFEILLFLAENAGKVVTREKLLETF--WEDPVSPRVVDTVIKRIRK 193 (220)
T ss_dssp CCCCHHHHHHHHHHHHTTTSCEEHHHHHHHH--CSSCCCTHHHHHHHHHHHH
T ss_pred EecCHHHHHHHHHHHHCCCceEcHHHHHHHH--hCCCCCcchHHHHHHHHHH
Confidence 4699999999999999999999999999999 8 999988877776654
No 251
>1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti}
Probab=85.16 E-value=1.4 Score=30.12 Aligned_cols=45 Identities=16% Similarity=0.310 Sum_probs=37.6
Q ss_pred CCCCChHHHHHHHHHHhhCCCcccHHHHHHHhhcCCChHHHHHHHHHHHhC
Q 026766 13 SDSLTDHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNK 63 (233)
Q Consensus 13 ~~~L~~~e~lVy~~I~~aG~~GIw~~dik~~t~~~l~~~~v~k~LK~Le~k 63 (233)
+..||+.|+.|+.++ -.|...++|...+ +++.++|.+.++...++
T Consensus 14 l~~L~~~e~~vl~l~----~~g~s~~eIA~~l--~is~~tV~~~~~r~~~k 58 (79)
T 1x3u_A 14 LQTLSERERQVLSAV----VAGLPNKSIAYDL--DISPRTVEVHRANVMAK 58 (79)
T ss_dssp HHHHCHHHHHHHHHH----TTTCCHHHHHHHT--TSCHHHHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHH----HcCCCHHHHHHHH--CcCHHHHHHHHHHHHHH
Confidence 346899999999885 3689999999999 99999999888776543
No 252
>3eqx_A FIC domain containing transcriptional regulator; FIC family protein, structural genomics, joint center for ST genomics, JCSG; HET: MSE PGE; 1.60A {Shewanella oneidensis}
Probab=84.55 E-value=1.1 Score=40.94 Aligned_cols=55 Identities=13% Similarity=0.109 Sum_probs=42.9
Q ss_pred HHHHHHHHhhCCCcccHHHHHHHhhcCCChHHHHHHHHHHHhCCCceeeecccCCCeeeEEe
Q 026766 21 RLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVVNIHSKGKKHLMA 82 (233)
Q Consensus 21 ~lVy~~I~~aG~~GIw~~dik~~t~~~l~~~~v~k~LK~Le~k~lIK~vksV~~~~rK~Yml 82 (233)
..+++++.+.+- +..+++.+.+ +.+.+++++.|+.|+++|+|++++. .+.++|+.
T Consensus 300 ~~ll~~l~~~p~--~t~~~~~~~~--~~S~~TA~r~L~~L~e~GiL~~~~~---gR~~~y~~ 354 (373)
T 3eqx_A 300 HELVQVIFEQPY--CRIQNLVESG--LAKRQTASVYLKQLCDIGVLEEVQS---GKEKLFVH 354 (373)
T ss_dssp HHHHHHHHHCSE--EEHHHHHHTS--SSCHHHHHHHHHHHHHTTSCEEC-----CCSCEEEC
T ss_pred HHHHHHHHHCCC--ccHHHHHHHh--CcCHHHHHHHHHHHHHCCcEEEeCC---CCceEeeh
Confidence 356667766554 7889999999 9999999999999999999998764 34567754
No 253
>2xub_A DNA-directed RNA polymerase III subunit RPC3; transcription, winged helix; 2.80A {Homo sapiens} PDB: 2xv4_S
Probab=84.53 E-value=16 Score=34.69 Aligned_cols=124 Identities=11% Similarity=0.053 Sum_probs=84.9
Q ss_pred HHHHHHHHhhCCCcccHHHHHHHhhcCCChHHHHHHHHHHHhCCCceeeecccCCCeeeEEeeccccCCCcccCCcccCC
Q 026766 21 RLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVVNIHSKGKKHLMAVEFEPSKEISGGAWYSEG 100 (233)
Q Consensus 21 ~lVy~~I~~aG~~GIw~~dik~~t~~~l~~~~v~k~LK~Le~k~lIK~vksV~~~~rK~Yml~~lePs~eiTGG~wy~d~ 100 (233)
..|+.++-..|. ..-++|...| +|+.++|..+|-.|.+.++|.-... + +|-+.|.-.
T Consensus 22 ~~V~~~Ll~~G~--ltL~~I~~~t--~L~~~~Vk~~L~vLIQh~lV~~~~~---------------~----~~~~~Y~~~ 78 (534)
T 2xub_A 22 EKIGVHLIRTGS--QPLRVIAHDT--GTSLDQVKKALCVLVQHNLVSYQVH---------------K----RGVVEYEAQ 78 (534)
T ss_dssp HHHHHHHHHHCS--EEHHHHHHHH--TCCHHHHHHHHHHHHHTTSEEEEEE---------------T----TTEEEEEEC
T ss_pred HHHHHHHHhcCC--cCHHHHHHHh--CCCHHHHHHHHHHHHhcCCeeEEeC---------------C----CCcEEEEEC
Confidence 467777888888 9999999999 9999999999999999999942211 1 123444311
Q ss_pred C-------CCHHHHHHHH-------HHHHHHhhhCCCCCHHHHHHHHHHhC----CcccccCHHHHHHHHHHHhcCCeEE
Q 026766 101 S-------LDTEFIKVVK-------SQCLKQIIKLKVATLEGISDSIKRSG----AFKVDLTKQQIEEIVRALVLDNQIM 162 (233)
Q Consensus 101 e-------~D~efI~~l~-------~~~~~~i~~~~~~T~~~I~~~I~~~~----i~~~~Ls~~di~~il~~Lv~Dg~ie 162 (233)
. .=.-|+..++ ..++..|-.+|..|++++..-+.... -....-+.++++..+..|+-+|-|+
T Consensus 79 ~~~il~~lR~pk~l~~i~~~~G~~a~~I~~~ll~~G~~t~~~ll~~~~~~~~~~~~~~~~~~~~~l~~~f~~Lv~~~fI~ 158 (534)
T 2xub_A 79 CSRVLRMLRYPRYIYTTKTLYSDTGELIVEELLLNGKLTMSAVVKKVADRLTETMEDGKTMDYAEVSNTFVRLADTHFVQ 158 (534)
T ss_dssp HHHHHGGGGHHHHHHHHHHHHHHHHHHHHHHHHHHCCBCHHHHHHHHHHHHHHTSSSSCCCCHHHHHHHHHHHHHTTSEE
T ss_pred hhhHHHHHhhHHHHHHHHHHhcHHHHHHHHHHHHcCCccHHHHHHHHHhhcccccccccccCHHHHHHHHHHHHhCCCEE
Confidence 0 0011222222 23444445678999999987776431 0112247899999999999999999
Q ss_pred EEeeC
Q 026766 163 EVKSN 167 (233)
Q Consensus 163 ~v~~~ 167 (233)
++.+.
T Consensus 159 rv~~~ 163 (534)
T 2xub_A 159 RCPSV 163 (534)
T ss_dssp ECCCC
T ss_pred eCCCC
Confidence 98753
No 254
>3l9f_A Putative uncharacterized protein SMU.1604C; PADR, transcription regulator; 1.80A {Streptococcus mutans}
Probab=84.50 E-value=0.86 Score=38.36 Aligned_cols=62 Identities=13% Similarity=0.228 Sum_probs=44.6
Q ss_pred HHHHHHHHHhhCCCcccHHHHHHHhh-----c-CCChHHHHHHHHHHHhCCCceeeeccc--CCCeeeEEeec
Q 026766 20 ERLIYDVIRSKQDMGIWTRDMKRELR-----V-NLPDNIVTKSIKSLQNKSLIKEVVNIH--SKGKKHLMAVE 84 (233)
Q Consensus 20 e~lVy~~I~~aG~~GIw~~dik~~t~-----~-~l~~~~v~k~LK~Le~k~lIK~vksV~--~~~rK~Yml~~ 84 (233)
...|+.++.+ |. ..--+|++... . +++..+|..+|++||+.|||....... .+.||+|-+.+
T Consensus 38 r~~IL~lL~~-~p--~~GYeL~~~l~~~~~~~~~~s~g~lY~~L~rLe~~GlI~~~~~~~~~~p~rk~Y~iT~ 107 (204)
T 3l9f_A 38 KDIILGILSK-KE--RSGYEINDILQNQLSYFYDGTYGMIYPTLRKLEKDGKITKEVVIQDGRPNKNIYAITE 107 (204)
T ss_dssp HHHHHHHTSS-CC--EEHHHHHHHHHHTSTTTEECCTTCHHHHHHHHHHTTSEEEEEECCTTSCCEEEEEECH
T ss_pred HHHHHHHHHc-CC--CCHHHHHHHHHHHhCCccCCCcchHHHHHHHHHHCCCeEEEeeccCCCCCceEEEECh
Confidence 4578888853 32 55556666651 1 589999999999999999998865432 35689997654
No 255
>3edp_A LIN2111 protein; APC88337, listeria innocua CLIP11262, structural GE PSI-2, protein structure initiative, midwest center for STR genomics, MCSG; 2.09A {Listeria innocua}
Probab=84.49 E-value=1.6 Score=36.98 Aligned_cols=50 Identities=8% Similarity=0.097 Sum_probs=37.5
Q ss_pred hHHHHHHHHHHhhCCC-------cc-cHHHHHHHhhcCCChHHHHHHHHHHHhCCCceee
Q 026766 18 DHERLIYDVIRSKQDM-------GI-WTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEV 69 (233)
Q Consensus 18 ~~e~lVy~~I~~aG~~-------GI-w~~dik~~t~~~l~~~~v~k~LK~Le~k~lIK~v 69 (233)
+--..||+.|.+.=.. -+ ..++|..+. +.+..+|+++|+.|++.|+|...
T Consensus 9 ~~~~~i~~~l~~~I~~g~~~~g~~lPse~~La~~~--~vSr~tvr~Al~~L~~~G~i~~~ 66 (236)
T 3edp_A 9 PLFEVIASKIKDSINRDEYKTGMLMPNETALQEIY--SSSRTTIRRAVDLLVEEGLVVRK 66 (236)
T ss_dssp CHHHHHHHHHHHHHHTTSSCCCC--CCHHHHHHHT--TCCHHHHHHHHHHHHHTTSEEEE
T ss_pred CHHHHHHHHHHHHHHhCCCCCcCCCcCHHHHHHHH--CcCHHHHHHHHHHHHHCCCEEEE
Confidence 3334566666543222 24 588999999 99999999999999999999774
No 256
>2htj_A P fimbrial regulatory protein KS71A; winged helix-turn-helix, PAP PILI, transcription activator; NMR {Escherichia coli} SCOP: a.4.5.73
Probab=83.75 E-value=2 Score=29.98 Aligned_cols=47 Identities=13% Similarity=0.121 Sum_probs=39.9
Q ss_pred HHHHHHHhhhCCCCCHHHHHHHHHHhCCcccccCHHHHHHHHHHHhcCCeEEEEe
Q 026766 111 KSQCLKQIIKLKVATLEGISDSIKRSGAFKVDLTKQQIEEIVRALVLDNQIMEVK 165 (233)
Q Consensus 111 ~~~~~~~i~~~~~~T~~~I~~~I~~~~i~~~~Ls~~di~~il~~Lv~Dg~ie~v~ 165 (233)
+..++.+|...+.+|..||++.+ | +|..-|...|+.|+-+|.|+...
T Consensus 2 r~~Il~~L~~~~~~s~~eLa~~l---g-----vs~~tv~r~L~~L~~~GlI~~~~ 48 (81)
T 2htj_A 2 KNEILEFLNRHNGGKTAEIAEAL---A-----VTDYQARYYLLLLEKAGMVQRSP 48 (81)
T ss_dssp HHHHHHHHHHSCCCCHHHHHHHH---T-----SCHHHHHHHHHHHHHHTSEEEEC
T ss_pred HHHHHHHHHHcCCCCHHHHHHHH---C-----cCHHHHHHHHHHHHHCCCEEEec
Confidence 56788888888889999999876 3 67888999999999999998653
No 257
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}
Probab=83.47 E-value=1.8 Score=36.16 Aligned_cols=68 Identities=13% Similarity=0.217 Sum_probs=51.4
Q ss_pred ccc-CCCCCHHHHHHHHHHHHHHhhh-------CCCCCHHHHHHHHHHhCCcccccCHHHHHHHHHHHhcCCeEEEEeeC
Q 026766 96 WYS-EGSLDTEFIKVVKSQCLKQIIK-------LKVATLEGISDSIKRSGAFKVDLTKQQIEEIVRALVLDNQIMEVKSN 167 (233)
Q Consensus 96 wy~-d~e~D~efI~~l~~~~~~~i~~-------~~~~T~~~I~~~I~~~~i~~~~Ls~~di~~il~~Lv~Dg~ie~v~~~ 167 (233)
||- ++-+ ..++.|+..|++-+-+ ..-.++++|+.-++-+|. -.++++|+|.||-.|++||.|.-..+.
T Consensus 108 ~f~~~~~~--lll~rlr~~v~r~l~rkv~~~~~~~rI~l~~i~~~l~~~~~--~~~~~~evE~ila~lI~~G~Ikg~I~~ 183 (203)
T 3t5x_A 108 FFIRCGIF--LILEKLKIITYRNLFKKVYLLLKTHQLSLDAFLVALKFMQV--EDVDIDEVQCILANLIYMGHVKGYISH 183 (203)
T ss_dssp HHHHHTCH--HHHHTHHHHHHHHHHHHHHHHHCCSEEEHHHHHHHHHHTTC--TTCCHHHHHHHHHHHHHHTSSCEEEET
T ss_pred HHHHCChH--HHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHhcCC--CCCCHHHHHHHHHHHHHcCceEEEEcc
Confidence 554 4544 4578888877766543 456789999999987763 357999999999999999999876543
No 258
>3dpl_C Cullin-5; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} PDB: 3dqv_C
Probab=83.43 E-value=12 Score=34.02 Aligned_cols=144 Identities=13% Similarity=0.079 Sum_probs=89.6
Q ss_pred CChHHHHHHHHHHhhCCCcccHHHHHHHhhcCCChHHHHHHHHHHHh----C-CCceeeec------ccCCCeeeEEeec
Q 026766 16 LTDHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQN----K-SLIKEVVN------IHSKGKKHLMAVE 84 (233)
Q Consensus 16 L~~~e~lVy~~I~~aG~~GIw~~dik~~t~~~l~~~~v~k~LK~Le~----k-~lIK~vks------V~~~~rK~Yml~~ 84 (233)
.|..|..|+-+..+.++..+.-.+|...| +|+...|.++|..|.. | +++...+. |. ++-...+=.+
T Consensus 197 vs~~Qa~ILllFn~~~~~~lt~~ei~~~t--~i~~~~L~r~L~sL~~~~k~k~~iL~~~~~~~~~~~~~-~~d~f~~N~~ 273 (382)
T 3dpl_C 197 VTTFQLAVLFAWNQRPREKISFENLKLAT--ELPDAELRRTLWSLVAFPKLKRQVLLYEPQVNSPKDFT-EGTLFSVNQE 273 (382)
T ss_dssp EEHHHHHHHGGGTTCTTCCEEHHHHHHHH--CCCHHHHHHHHHHHHCCTTCSSCSEEESSCCSSGGGCC-TTCEEEECTT
T ss_pred EcHHHHHHHHHhccCCCCcCcHHHHHHHH--CcCHHHHHHHHHHHhcccchhcceeeecCCccccCcCC-CCCEEEEcCC
Confidence 46677777766666555789999999999 9999999999999964 2 34432111 11 0111111111
Q ss_pred cc----------------cCCCcccCCcccC-----CCCCHHHHHHHHHHHHHHhhhCCCCCHHHHHHHHHHhCCccccc
Q 026766 85 FE----------------PSKEISGGAWYSE-----GSLDTEFIKVVKSQCLKQIIKLKVATLEGISDSIKRSGAFKVDL 143 (233)
Q Consensus 85 le----------------Ps~eiTGG~wy~d-----~e~D~efI~~l~~~~~~~i~~~~~~T~~~I~~~I~~~~i~~~~L 143 (233)
+. +...+. + ..+ .+.+.+=-..|..+|.+.+..+...+-+++..-+.+.=-.+...
T Consensus 274 F~~~k~~k~~~r~ki~~~~~~q~~--~-~~e~~~~~~~v~edR~~~i~AaIVRIMK~rK~l~h~~Lv~ev~~ql~~rF~p 350 (382)
T 3dpl_C 274 FSLIKNAKVQKRGKINLIGRLQLT--T-ERMREEENEGIVQLRILRTQEAIIQIMKMRKKISNAQLQTELVEILKNMFLP 350 (382)
T ss_dssp CCEESSSSEESEEEEECCTTTTSC--C-HHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSEECHHHHHHHHHHHTTTTCCC
T ss_pred CcCCcccccceeEEEecccccccc--c-chhhhhhHHHHHHHhhheeeEEEehhhhccCcccHHHHHHHHHHHHHhcCCC
Confidence 11 100000 0 001 11222223345566777787788888888777766542235678
Q ss_pred CHHHHHHHHHHHhcCCeEEEEe
Q 026766 144 TKQQIEEIVRALVLDNQIMEVK 165 (233)
Q Consensus 144 s~~di~~il~~Lv~Dg~ie~v~ 165 (233)
+..+|..-|+.|+=-+-||+..
T Consensus 351 ~~~~IKk~Ie~LIereYleR~~ 372 (382)
T 3dpl_C 351 QKKMIKEQIEWLIEHKYIRRDE 372 (382)
T ss_dssp CHHHHHHHHHHHHHTTSEEEET
T ss_pred CHHHHHHHHHHHHhhhhhccCC
Confidence 8999999999999999999853
No 259
>2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2}
Probab=83.41 E-value=1.7 Score=31.18 Aligned_cols=47 Identities=15% Similarity=0.157 Sum_probs=36.7
Q ss_pred HHHHHHHhhhC------CCCCHHHHHHHHHHhCCcccccCHHHHHHHHHHHhcCCeEEEEe
Q 026766 111 KSQCLKQIIKL------KVATLEGISDSIKRSGAFKVDLTKQQIEEIVRALVLDNQIMEVK 165 (233)
Q Consensus 111 ~~~~~~~i~~~------~~~T~~~I~~~I~~~~i~~~~Ls~~di~~il~~Lv~Dg~ie~v~ 165 (233)
.+.|+.||+.. ..||+.||++.+ | +|..-|+.-|+.|+=.|.|....
T Consensus 6 ~~~IL~~I~~~i~~~~g~~psv~EIa~~l---g-----vS~~TVrr~L~~Le~kG~I~R~~ 58 (77)
T 2jt1_A 6 VTKIISIVQERQNMDDGAPVKTRDIADAA---G-----LSIYQVRLYLEQLHDVGVLEKVN 58 (77)
T ss_dssp HHHHHHHHHHHHHHHTTSCEEHHHHHHHH---T-----CCHHHHHHHHHHHHHTTSEEEES
T ss_pred HHHHHHHHHHHHhhccCCCcCHHHHHHHH---C-----CCHHHHHHHHHHHHHCCcEEecC
Confidence 34556666554 778999999876 3 46677999999999999999875
No 260
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=83.40 E-value=3.6 Score=32.13 Aligned_cols=56 Identities=9% Similarity=0.161 Sum_probs=46.8
Q ss_pred HHHHHHHHHhhh-CCCCCHHHHHHHHHHhCCcccccCHHHHHHHHHHHhcCCeEEEEeeC
Q 026766 109 VVKSQCLKQIIK-LKVATLEGISDSIKRSGAFKVDLTKQQIEEIVRALVLDNQIMEVKSN 167 (233)
Q Consensus 109 ~l~~~~~~~i~~-~~~~T~~~I~~~I~~~~i~~~~Ls~~di~~il~~Lv~Dg~ie~v~~~ 167 (233)
.-|..++.+|.. ...+|++||++.+++.+- .++..=|-..|+.|+-.|.|.++...
T Consensus 22 ~qR~~Il~~L~~~~~~~sa~ei~~~l~~~~~---~is~aTVYR~L~~L~e~Glv~~~~~~ 78 (145)
T 2fe3_A 22 PQRHAILEYLVNSMAHPTADDIYKALEGKFP---NMSVATVYNNLRVFRESGLVKELTYG 78 (145)
T ss_dssp HHHHHHHHHHHHCSSCCCHHHHHHHHGGGCT---TCCHHHHHHHHHHHHHTTSEEEECCT
T ss_pred HHHHHHHHHHHhCCCCCCHHHHHHHHHHhCC---CCChhhHHHHHHHHHHCCCEEEEeeC
Confidence 346678888875 467999999999998762 58899999999999999999998643
No 261
>1oyi_A Double-stranded RNA-binding protein; (alpha+beta) helix-turn-helix, viral protein; NMR {Vaccinia virus} SCOP: a.4.5.19
Probab=83.15 E-value=0.72 Score=33.85 Aligned_cols=49 Identities=12% Similarity=0.171 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHhhhCCCCCHHHHHHHHHHhCCcccccCHHHHHHHHHHHhcCCeEEEE
Q 026766 107 IKVVKSQCLKQIIKLKVATLEGISDSIKRSGAFKVDLTKQQIEEIVRALVLDNQIMEV 164 (233)
Q Consensus 107 I~~l~~~~~~~i~~~~~~T~~~I~~~I~~~~i~~~~Ls~~di~~il~~Lv~Dg~ie~v 164 (233)
+..+.+.++.+|++.+ .|+.||++-+ .+|...|++.|..|+-+|.|...
T Consensus 15 ~~~~~~~IL~lL~~~g-~sa~eLAk~L--------giSk~aVr~~L~~Le~eG~I~~~ 63 (82)
T 1oyi_A 15 NAEIVCEAIKTIGIEG-ATAAQLTRQL--------NMEKREVNKALYDLQRSAMVYSS 63 (82)
T ss_dssp SHHHHHHHHHHHSSST-EEHHHHHHHS--------SSCHHHHHHHHHHHHHHTSSEEC
T ss_pred hHHHHHHHHHHHHHcC-CCHHHHHHHH--------CcCHHHHHHHHHHHHHCCCEEeC
Confidence 3577888889998776 8899988754 38889999999999999999875
No 262
>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A
Probab=83.12 E-value=2.7 Score=30.26 Aligned_cols=50 Identities=16% Similarity=0.246 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHhhhCC---CCCHHHHHHHHHHhCCcccccCHHHHHHHHHHHhcCCeEEEE
Q 026766 107 IKVVKSQCLKQIIKLK---VATLEGISDSIKRSGAFKVDLTKQQIEEIVRALVLDNQIMEV 164 (233)
Q Consensus 107 I~~l~~~~~~~i~~~~---~~T~~~I~~~I~~~~i~~~~Ls~~di~~il~~Lv~Dg~ie~v 164 (233)
-+.+.+.++.+|...+ ..|+.+|++-+. ++...|+..|..|.=+|.|+.+
T Consensus 8 ~~~~~~~IL~~L~~~~pg~~~t~~eLA~~Lg--------vsr~tV~~~L~~Le~~G~I~~~ 60 (81)
T 1qbj_A 8 YQDQEQRILKFLEELGEGKATTAHDLSGKLG--------TPKKEINRVLYSLAKKGKLQKE 60 (81)
T ss_dssp HHHHHHHHHHHHHHHCTTCCBCHHHHHHHHT--------CCHHHHHHHHHHHHHTTSEEEE
T ss_pred chHHHHHHHHHHHHcCCCCCcCHHHHHHHHC--------cCHHHHHHHHHHHHHCCCEEec
Confidence 3567788999999888 899999998764 6677899999999999999876
No 263
>1p6r_A Penicillinase repressor; transcription regulation, DNA-binding, winged helix protein, bacterial resistance to antibiotics; NMR {Bacillus licheniformis} SCOP: a.4.5.39 PDB: 2p7c_B
Probab=83.02 E-value=3.8 Score=28.34 Aligned_cols=53 Identities=11% Similarity=0.209 Sum_probs=44.8
Q ss_pred HHHHHHHHhhhCCCCCHHHHHHHHHHhCCcccccCHHHHHHHHHHHhcCCeEEEEee
Q 026766 110 VKSQCLKQIIKLKVATLEGISDSIKRSGAFKVDLTKQQIEEIVRALVLDNQIMEVKS 166 (233)
Q Consensus 110 l~~~~~~~i~~~~~~T~~~I~~~I~~~~i~~~~Ls~~di~~il~~Lv~Dg~ie~v~~ 166 (233)
.+..++.+|...+.+|..||++.+.... .++..-|..+|+.|+-.|.|+..+.
T Consensus 10 ~e~~vL~~L~~~~~~t~~ei~~~l~~~~----~~s~~Tv~~~l~rL~~kGlv~r~~~ 62 (82)
T 1p6r_A 10 AELEVMKVIWKHSSINTNEVIKELSKTS----TWSPKTIQTMLLRLIKKGALNHHKE 62 (82)
T ss_dssp HHHHHHHHHHTSSSEEHHHHHHHHHHHS----CCCHHHHHHHHHHHHHTTSEEEEEE
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHhhcC----CccHHHHHHHHHHHHHCCCeEEEec
Confidence 4566788888888899999999998642 4788999999999999999998764
No 264
>4asn_A TUBR; transcription, tubulin, FTSZ, segregation, partition; 3.50A {Bacillus megaterium}
Probab=82.93 E-value=2.8 Score=31.09 Aligned_cols=65 Identities=17% Similarity=0.162 Sum_probs=55.2
Q ss_pred CCCCChHHHHHHHHHHhhCC----CcccHHHHHHHhhcCCChHHHHHHHHHHHhCCCceeeecccCCCeeeEE
Q 026766 13 SDSLTDHERLIYDVIRSKQD----MGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVVNIHSKGKKHLM 81 (233)
Q Consensus 13 ~~~L~~~e~lVy~~I~~aG~----~GIw~~dik~~t~~~l~~~~v~k~LK~Le~k~lIK~vksV~~~~rK~Ym 81 (233)
+++|+-++.-|+..+.+.|. +.|...+|+..+ ......++|.|-+||.-.+||-|..-+ .-|+|+
T Consensus 9 ~~~L~~~D~SIL~~L~~~~A~~~~KAI~K~~I~D~i--E~~TA~~RKsL~rLEAi~FI~~V~G~r--~HK~~L 77 (101)
T 4asn_A 9 MRKLTIEDVSILGWLFQNEANAVFKAIKKSSIADEL--EYSTANFRKTLNKLEAIHFIGTVTGGK--EHKLYL 77 (101)
T ss_dssp HHTCCHHHHHHHHHHHHTTCCSGGGCEEHHHHHTTS--CCCSHHHHHHHHHHHHTTCEEEECSSS--SCEEEE
T ss_pred HHhCChhHHHHHHHHHhcCccceeeeecHhhHHHHH--HHhHHHHHHHHHHHHHHHHhhhcccCc--cceeeh
Confidence 46788899999999998776 468889999999 999999999999999999999887655 356764
No 265
>3maj_A DNA processing chain A; MCSG, PSI-2, structural genomics, protein structure initiati midwest center for structural genomics; HET: DNA; 2.05A {Rhodopseudomonas palustris}
Probab=82.75 E-value=1.8 Score=40.10 Aligned_cols=52 Identities=12% Similarity=0.097 Sum_probs=46.0
Q ss_pred CCCChHHHHHHHHHHhhCCCcccHHHHHHHhhcCCChHHHHHHHHHHHhCCCceeee
Q 026766 14 DSLTDHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVV 70 (233)
Q Consensus 14 ~~L~~~e~lVy~~I~~aG~~GIw~~dik~~t~~~l~~~~v~k~LK~Le~k~lIK~vk 70 (233)
..|+++|..||+.+. ...+..-+|..++ +|+...|..+|-.||=+|+|+++.
T Consensus 324 ~~l~~~~~~vl~~l~---~~~~~~D~l~~~~--gl~~~~v~~~L~~LEl~G~v~~~~ 375 (382)
T 3maj_A 324 EPDTGDRTRILALLG---PSPVGIDDLIRLS--GISPAVVRTILLELELAGRLERHG 375 (382)
T ss_dssp CCCTTHHHHHHHHCC---SSCEEHHHHHHHH--CCCHHHHHHHHHHHHHTTCCEECT
T ss_pred CCCChHHHHHHHhhC---CCCCCHHHHHHHH--CcCHHHHHHHHHHHHhCCcEEeCC
Confidence 358889999999884 3568999999999 999999999999999999998753
No 266
>3dtp_E RLC, myosin regulatory light chain; muscle protein, smooth muscle, myosin subfragment 2, heavy meromyosin, essential light chain; 20.00A {Avicularia avicularia}
Probab=82.70 E-value=9.7 Score=30.00 Aligned_cols=112 Identities=11% Similarity=0.169 Sum_probs=68.9
Q ss_pred CCCCCCCCCCCCCChHHH----HHHHHHHhhCCCcccHHHHHHHhh---cCCChHHHHHHHHHHHhCCCceeeecccCCC
Q 026766 4 RKRPDSNAPSDSLTDHER----LIYDVIRSKQDMGIWTRDMKRELR---VNLPDNIVTKSIKSLQNKSLIKEVVNIHSKG 76 (233)
Q Consensus 4 ~~~~~~~~~~~~L~~~e~----lVy~~I~~aG~~GIw~~dik~~t~---~~l~~~~v~k~LK~Le~k~lIK~vksV~~~~ 76 (233)
|...........|++++. .++..+...|+--|...+++.-++ .+++...+...+..+
T Consensus 39 r~~~~~~~~~~~ls~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~lg~~~~~~~~~~l~~~~---------------- 102 (196)
T 3dtp_E 39 RAQRSGSNVFAMFTQHQVQEFKEAFQLIDQDKDGFISKNDIRATFDSLGRLCTEQELDSMVAEA---------------- 102 (196)
T ss_dssp GCCCCCCCSSCSSCTTTHHHHHHHHHHHCCSCSSBCCHHHHHHHHHTTSCCCCHHHHHHHHTTS----------------
T ss_pred cccccchhhhhhCCHHHHHHHHHHHHHHCCCCCCcCCHHHHHHHHHHhCCCCCHHHHHHHHHHc----------------
Confidence 444444556677887543 455556666666688888887652 245555555544432
Q ss_pred eeeEEeeccccCCCcccCCcccCCCCC-HHHHHHHHH------------HHHHHhh--hCCCCCHHHHHHHHHHhCCccc
Q 026766 77 KKHLMAVEFEPSKEISGGAWYSEGSLD-TEFIKVVKS------------QCLKQII--KLKVATLEGISDSIKRSGAFKV 141 (233)
Q Consensus 77 rK~Yml~~lePs~eiTGG~wy~d~e~D-~efI~~l~~------------~~~~~i~--~~~~~T~~~I~~~I~~~~i~~~ 141 (233)
+|.+| .||+..+.. .+++.+. ..+++|.+++..++ ..|.
T Consensus 103 ----------------------~g~i~~~eF~~~~~~~~~~~~~~~~l~~~F~~~D~d~~G~Is~~El~~~l-~~g~--- 156 (196)
T 3dtp_E 103 ----------------------PGPINFTMFLTIFGDRIAGTDEEDVIVNAFNLFDEGDGKCKEETLKRSLT-TWGE--- 156 (196)
T ss_dssp ----------------------SSCCBHHHHHHHHHHCCCSSCCHHHHHHHHHTTCSSSSCCBHHHHHHHHH-HSSS---
T ss_pred ----------------------cCCCcHHHHHHHHHHHhcCCCcHHHHHHHHHHHCCCCCCcCcHHHHHHHH-HcCC---
Confidence 22233 345554432 1222222 35899999999999 8873
Q ss_pred ccCHHHHHHHHHHHhc
Q 026766 142 DLTKQQIEEIVRALVL 157 (233)
Q Consensus 142 ~Ls~~di~~il~~Lv~ 157 (233)
.++.++++.+++.+-.
T Consensus 157 ~~~~~~~~~l~~~~D~ 172 (196)
T 3dtp_E 157 KFSQDEVDQALSEAPI 172 (196)
T ss_dssp CCCHHHHHHHHHSSCE
T ss_pred CCCHHHHHHHHHHcCC
Confidence 6999999999887643
No 267
>1ldd_A APC2WHB, anaphase promoting complex; ubiquitin, ligase, ubiquitination, ring finger, winged-helix; 2.00A {Saccharomyces cerevisiae} SCOP: a.4.5.34
Probab=82.59 E-value=3.5 Score=29.57 Aligned_cols=54 Identities=17% Similarity=0.122 Sum_probs=40.8
Q ss_pred HHHHHHHhhhCCCCCHHHHHHHHHHhCCcc---cccCHHHHHHHHHHHhcCCeEEEE
Q 026766 111 KSQCLKQIIKLKVATLEGISDSIKRSGAFK---VDLTKQQIEEIVRALVLDNQIMEV 164 (233)
Q Consensus 111 ~~~~~~~i~~~~~~T~~~I~~~I~~~~i~~---~~Ls~~di~~il~~Lv~Dg~ie~v 164 (233)
-..|.-.|.+.+...++.||..++=--... ...|.+++++.|+.||-|++++.+
T Consensus 10 w~yI~GMLtN~~slpl~RIh~mLkmf~~~~~~~~~it~~eL~~fL~~~v~e~kL~~~ 66 (74)
T 1ldd_A 10 LPFIEGMLTNLGAMKLHKIHSFLKITVPKDWGYNRITLQQLEGYLNTLADEGRLKYI 66 (74)
T ss_dssp HHHHHHHHHHHCSEEHHHHHHHHHHHSCGGGCCTTCCHHHHHHHHHHHHHTTSEECC
T ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCCCCcCCHHHHHHHHHHHHhCCeEEEe
Confidence 334444455788888999999999554222 235889999999999999999854
No 268
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=82.58 E-value=3 Score=32.17 Aligned_cols=55 Identities=7% Similarity=0.170 Sum_probs=46.8
Q ss_pred HHHHHHHHHhhhC--CCCCHHHHHHHHHHhCCcccccCHHHHHHHHHHHhcCCeEEEEee
Q 026766 109 VVKSQCLKQIIKL--KVATLEGISDSIKRSGAFKVDLTKQQIEEIVRALVLDNQIMEVKS 166 (233)
Q Consensus 109 ~l~~~~~~~i~~~--~~~T~~~I~~~I~~~~i~~~~Ls~~di~~il~~Lv~Dg~ie~v~~ 166 (233)
.-|..++++|... ..+|++||.+.+++.+- .++..-|-..|+.|+-.|.|.++..
T Consensus 18 ~qR~~Il~~L~~~~~~~~sa~ei~~~l~~~~~---~is~aTVYR~L~~L~e~Glv~~~~~ 74 (136)
T 1mzb_A 18 LPRVKILQMLDSAEQRHMSAEDVYKALMEAGE---DVGLATVYRVLTQFEAAGLVVRHNF 74 (136)
T ss_dssp HHHHHHHHHHHCC-CCSBCHHHHHHHHHHTTC---CCCHHHHHHHHHHHHHHTSEEEECS
T ss_pred HHHHHHHHHHHhCCCCCCCHHHHHHHHHhhCC---CCCHHHHHHHHHHHHHCCcEEEEEe
Confidence 3467788888754 58999999999998763 5889999999999999999999864
No 269
>2qc0_A Uncharacterized protein; NP_719793.1, uncharacterized protein, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.60A {Shewanella oneidensis} PDB: 3eqx_A*
Probab=81.95 E-value=1.4 Score=40.09 Aligned_cols=54 Identities=13% Similarity=0.108 Sum_probs=40.9
Q ss_pred HHHHHHHHhhCCCcccHHHHHHHhhcCCChHHHHHHHHHHHhCCCceeeecccCCCeeeEE
Q 026766 21 RLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVVNIHSKGKKHLM 81 (233)
Q Consensus 21 ~lVy~~I~~aG~~GIw~~dik~~t~~~l~~~~v~k~LK~Le~k~lIK~vksV~~~~rK~Ym 81 (233)
..|++.+.... -+...++.+.+ +++.++++|.|+.|++.|+|+++.. .+.++|+
T Consensus 300 ~~ll~~l~~~p--~~t~~~~~~~~--gvS~~Ta~r~L~~L~e~GiL~~~~~---gR~~~y~ 353 (373)
T 2qc0_A 300 HELVQVIFEQP--YCRIQNLVESG--LAKRQTASVYLKQLCDIGVLEEVQS---GKEKLFV 353 (373)
T ss_dssp HHHHHHHHHCS--EEEHHHHHHTS--SSCHHHHHHHHHHHHHTTSCEEC-----CCSCEEE
T ss_pred HHHHHHHHhCC--cccHHHHHHHh--CCCHHHHHHHHHHHHHCCcEEEecC---CCceEEe
Confidence 45566666433 36778899999 9999999999999999999998753 2346775
No 270
>3szt_A QCSR, quorum-sensing control repressor; quorum sensing acyl-homoserine lactone, helix-turn-helix, transcription factor, 3-OXO-C12 HSL; HET: OHN; 2.55A {Pseudomonas aeruginosa}
Probab=81.39 E-value=2.2 Score=35.82 Aligned_cols=45 Identities=18% Similarity=0.116 Sum_probs=40.2
Q ss_pred CCCCChHHHHHHHHHHhhCCCcccHHHHHHHhhcCCChHHHHHHHHHHHhC
Q 026766 13 SDSLTDHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNK 63 (233)
Q Consensus 13 ~~~L~~~e~lVy~~I~~aG~~GIw~~dik~~t~~~l~~~~v~k~LK~Le~k 63 (233)
...||+.|+.|+.++. .|...++|..++ +++.++|+..++.+-+|
T Consensus 173 ~~~Lt~re~~vl~~~~----~G~s~~eIa~~l--~is~~tV~~~~~~~~~k 217 (237)
T 3szt_A 173 NVRLTARETEMLKWTA----VGKTYGEIGLIL--SIDQRTVKFHIVNAMRK 217 (237)
T ss_dssp GCCCCHHHHHHHHHHH----TTCCHHHHHHHH--TSCHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHH----cCCCHHHHHHHH--CCCHHHHHHHHHHHHHH
Confidence 4679999999999983 679999999999 99999999999988764
No 271
>3eet_A Putative GNTR-family transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 1.97A {Streptomyces avermitilis}
Probab=80.75 E-value=2.5 Score=36.56 Aligned_cols=47 Identities=15% Similarity=0.188 Sum_probs=36.9
Q ss_pred HHHHHHHhhCCC-------cc-cHHHHHHHhhcCCChHHHHHHHHHHHhCCCceeee
Q 026766 22 LIYDVIRSKQDM-------GI-WTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVV 70 (233)
Q Consensus 22 lVy~~I~~aG~~-------GI-w~~dik~~t~~~l~~~~v~k~LK~Le~k~lIK~vk 70 (233)
.||+.|.+.=.. -+ ..++|.++. ++...+|+++|..|++.|+|...+
T Consensus 33 ~i~~~l~~~I~~g~~~~g~~lPse~~La~~~--~vSr~tvr~Al~~L~~~G~i~~~~ 87 (272)
T 3eet_A 33 RVAGDLRKKIVDGSLPPHTRLPSQARIREEY--GVSDTVALEARKVLMAEGLVEGRS 87 (272)
T ss_dssp HHHHHHHHHHHHTSSCTTSBCCCHHHHHHHH--TCCHHHHHHHHHHHHHTTSEEECC
T ss_pred HHHHHHHHHHHcCCCCCcCCCcCHHHHHHHH--CCCHHHHHHHHHHHHHCCCEEEec
Confidence 566666543222 24 689999999 999999999999999999997653
No 272
>3htu_A Vacuolar protein-sorting-associated protein 25; ESCRT-II, ESCRT-III, VPS20, VPS25, MVB, cytoplasm, nucleus, polymorphism, protein transport; 2.00A {Homo sapiens}
Probab=79.95 E-value=5.3 Score=29.02 Aligned_cols=52 Identities=12% Similarity=0.236 Sum_probs=41.0
Q ss_pred HHHHHHHHHhhCCCc--ccHHHHHH--Hh-hc---CCChHHHHHHHHHHHhCCCceeeec
Q 026766 20 ERLIYDVIRSKQDMG--IWTRDMKR--EL-RV---NLPDNIVTKSIKSLQNKSLIKEVVN 71 (233)
Q Consensus 20 e~lVy~~I~~aG~~G--Iw~~dik~--~t-~~---~l~~~~v~k~LK~Le~k~lIK~vks 71 (233)
-.+||+-+++.|..| ++.-+|.. .+ +. ||+...+.|+|+.|+++|--.-+++
T Consensus 11 a~~Iy~Wv~~~G~~~sV~TlyEL~~Gd~t~~~ef~gmd~~~L~kaL~~L~k~gkA~i~~~ 70 (79)
T 3htu_A 11 GKLIYQWVSRSGQNNSVFTLYELTNGEDTEDEEFHGLDEATLLRALQALQQEHKAEIITV 70 (79)
T ss_dssp HHHHHHHHHTTCCSCSEECHHHHHHSSTTTTSTTTTCCHHHHHHHHHHHHHTTSEEEECC
T ss_pred HHHHHHHHHHcCCCCceEEEeeeccCCCCCCCcccCCCHHHHHHHHHHHHHcCCEEEEec
Confidence 468999999999876 56677776 33 22 8999999999999999997655553
No 273
>1u78_A TC3 transposase, transposable element TC3 transposase; transposon DNA, bipartite DNA-binding, HTH- motif, DNA binding protein/DNA complex; 2.69A {Caenorhabditis elegans} SCOP: a.4.1.2 a.4.1.2
Probab=79.92 E-value=16 Score=26.99 Aligned_cols=99 Identities=16% Similarity=0.203 Sum_probs=64.1
Q ss_pred CCCChHHHHHHHHHHhhCCCcccHHHHHHHhhcCCChHHHHHHHHHHHhCCCceeeecccCCCeeeEEeeccccCCCccc
Q 026766 14 DSLTDHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVVNIHSKGKKHLMAVEFEPSKEISG 93 (233)
Q Consensus 14 ~~L~~~e~lVy~~I~~aG~~GIw~~dik~~t~~~l~~~~v~k~LK~Le~k~lIK~vksV~~~~rK~Yml~~lePs~eiTG 93 (233)
..|+.+++...-... ..|...++|.+.+ +++.++|.+.++.....|..+ + .|
T Consensus 5 ~~~s~~~r~~i~~~~---~~G~s~~~ia~~l--gis~~Tv~r~~~~~~~~g~~~-------------------~----~g 56 (141)
T 1u78_A 5 SALSDTERAQLDVMK---LLNVSLHEMSRKI--SRSRHCIRVYLKDPVSYGTSK-------------------R----AP 56 (141)
T ss_dssp CCCCHHHHHHHHHHH---HTTCCHHHHHHHH--TCCHHHHHHHHHSGGGTTCCC-------------------C----CC
T ss_pred ccCCHHHHHHHHHHH---HcCCCHHHHHHHH--CcCHHHHHHHHHcccccCCcC-------------------C----CC
Confidence 357777654322222 3578999999999 999999999999876654321 0 22
Q ss_pred CCcccCCCCCHHHHHHHHHHHHHHhhhCCCCCHHHHHHHHHHhCCcccccCHHHHHHHHHHH
Q 026766 94 GAWYSEGSLDTEFIKVVKSQCLKQIIKLKVATLEGISDSIKRSGAFKVDLTKQQIEEIVRAL 155 (233)
Q Consensus 94 G~wy~d~e~D~efI~~l~~~~~~~i~~~~~~T~~~I~~~I~~~~i~~~~Ls~~di~~il~~L 155 (233)
. ...++.++...+.+. ...+..|+.+|...+ |+ .+|..-|..+|..+
T Consensus 57 r----~~~l~~~~~~~i~~~-----~~~~~~s~~~i~~~l---g~---~~s~~tV~r~l~~~ 103 (141)
T 1u78_A 57 R----RKALSVRDERNVIRA-----ASNSCKTARDIRNEL---QL---SASKRTILNVIKRS 103 (141)
T ss_dssp C----CCSSCHHHHHHHHHH-----HHHCCCCHHHHHHHT---TC---CSCHHHHHHHHHHT
T ss_pred C----CCcCCHHHHHHHHHH-----HhCCCCCHHHHHHHH---CC---CccHHHHHHHHHHC
Confidence 2 234666665544433 234457888888877 43 57888888877753
No 274
>3qao_A LMO0526 protein, MERR-like transcriptional regulator; structural genomics, the center for structural genomics of I diseases, csgid; 1.87A {Listeria monocytogenes}
Probab=79.87 E-value=16 Score=31.30 Aligned_cols=73 Identities=7% Similarity=0.067 Sum_probs=51.9
Q ss_pred CcccHHHHHHHhhcCCChHHHHHHHHHHHhCCCceeeecccCCCeeeEEeeccccCCCcccCCcccCCCCCHHHHHHHHH
Q 026766 33 MGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVVNIHSKGKKHLMAVEFEPSKEISGGAWYSEGSLDTEFIKVVKS 112 (233)
Q Consensus 33 ~GIw~~dik~~t~~~l~~~~v~k~LK~Le~k~lIK~vksV~~~~rK~Yml~~lePs~eiTGG~wy~d~e~D~efI~~l~~ 112 (233)
..+.++++.+.+ |++.++|+ .-|+.|||++.+. ...+.+.| +.+=|+.|+.
T Consensus 2 ~~~tI~evA~~~--gvs~~TLR----yYe~~GLL~p~~~-~~~GyR~Y----------------------~~~dl~~L~~ 52 (249)
T 3qao_A 2 NAMQIKELAELT--GVSVRTLH----HYDKIGLLVPQKD-DWNGYRIY----------------------SEKDVDKLQQ 52 (249)
T ss_dssp CCBCHHHHHHHH--CCCHHHHH----HHHHTTSSCCEEC-TTTCCEEB----------------------CHHHHHHHHH
T ss_pred CCCCHHHHHHHH--CcCHHHHH----HHHHCCCCCCceE-CCCCCeee----------------------CHHHHHHHHH
Confidence 457889999999 99998875 5788999987652 23345544 5555666665
Q ss_pred HHHHHhhhCCCCCHHHHHHHHHHhC
Q 026766 113 QCLKQIIKLKVATLEGISDSIKRSG 137 (233)
Q Consensus 113 ~~~~~i~~~~~~T~~~I~~~I~~~~ 137 (233)
+. +++..+ .|+++|.+++....
T Consensus 53 I~--~lr~~G-~sL~eIk~~l~~~~ 74 (249)
T 3qao_A 53 IL--FFKELD-FPLKKIQQILDDPL 74 (249)
T ss_dssp HH--HHHHTT-CCHHHHHHHHHCTT
T ss_pred HH--HHHHCC-CCHHHHHHHhccCc
Confidence 44 455565 56999999998544
No 275
>2v7f_A RPS19, RPS19E SSU ribosomal protein S19E; diamond blackfan anemia small ribosomal subunit; 1.15A {Pyrococcus abyssi} SCOP: a.4.5.84
Probab=79.64 E-value=2.1 Score=34.47 Aligned_cols=36 Identities=17% Similarity=0.411 Sum_probs=32.0
Q ss_pred hCCCcccHHHHHHHhhcC--------------CChHHHHHHHHHHHhCCCceee
Q 026766 30 KQDMGIWTRDMKRELRVN--------------LPDNIVTKSIKSLQNKSLIKEV 69 (233)
Q Consensus 30 aG~~GIw~~dik~~t~~~--------------l~~~~v~k~LK~Le~k~lIK~v 69 (233)
.|.-|. ++|.+.. + .+.++|+++|+.||+.|||...
T Consensus 65 ~g~~G~--~~La~~~--gg~k~~g~~p~~~~~vSr~tVR~AL~~Le~~GlV~~~ 114 (150)
T 2v7f_A 65 DGPVGI--ERLRTYY--GGRKNRGHAPERFYKAGGSIIRKALQQLEAAGFVEKV 114 (150)
T ss_dssp HCSBCH--HHHHHHH--CC----CCCTTSCCCHHHHHHHHHHHHHHHTTSEEEE
T ss_pred hCCCCH--HHHHHHH--CCCccCCcCCccccccchHHHHHHHHHHHHCCCEEEe
Confidence 456676 9999999 8 9999999999999999999764
No 276
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=79.37 E-value=3.5 Score=32.47 Aligned_cols=54 Identities=6% Similarity=0.071 Sum_probs=46.1
Q ss_pred HHHHHHHHhhhC--CCCCHHHHHHHHHHhCCcccccCHHHHHHHHHHHhcCCeEEEEee
Q 026766 110 VKSQCLKQIIKL--KVATLEGISDSIKRSGAFKVDLTKQQIEEIVRALVLDNQIMEVKS 166 (233)
Q Consensus 110 l~~~~~~~i~~~--~~~T~~~I~~~I~~~~i~~~~Ls~~di~~il~~Lv~Dg~ie~v~~ 166 (233)
-|..++.+|... ..+|++||++.+++.+- .++..=|...|+.|+-.|.|.++..
T Consensus 18 qR~~Il~~L~~~~~~h~sa~ei~~~l~~~~~---~is~aTVYR~L~~L~e~Glv~~~~~ 73 (150)
T 2w57_A 18 PRLKILEVLQQPECQHISAEELYKKLIDLGE---EIGLATVYRVLNQFDDAGIVTRHHF 73 (150)
T ss_dssp HHHHHHHHHTSGGGSSEEHHHHHHHHHHTTC---CCCHHHHHHHHHHHHHTTSEEEEEC
T ss_pred HHHHHHHHHHhCCCCCCCHHHHHHHHHHhCC---CCCHHHHHHHHHHHHHCCcEEEEEe
Confidence 456788888654 58999999999998763 5889999999999999999999864
No 277
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=79.31 E-value=6 Score=34.54 Aligned_cols=75 Identities=13% Similarity=0.016 Sum_probs=47.1
Q ss_pred CCCCCCChHHHHHHHHHHhh---CCCcccHHH-------HH-HHhhc-CCChHHHHHHHHHHHhCCCceeeecccCCCee
Q 026766 11 APSDSLTDHERLIYDVIRSK---QDMGIWTRD-------MK-RELRV-NLPDNIVTKSIKSLQNKSLIKEVVNIHSKGKK 78 (233)
Q Consensus 11 ~~~~~L~~~e~lVy~~I~~a---G~~GIw~~d-------ik-~~t~~-~l~~~~v~k~LK~Le~k~lIK~vksV~~~~rK 78 (233)
..+..|++.++.++..|... |+..+...+ +. ..++. .++.+.+...|..|+..|||..... ...++.
T Consensus 301 ~~l~~l~~~~~~~l~aia~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~~gli~~~~~-~~~~~g 379 (412)
T 1w5s_A 301 HELEALSIHELIILRLIAEATLGGMEWINAGLLRQRYEDASLTMYNVKPRGYTQYHIYLKHLTSLGLVDAKPS-GRGMRG 379 (412)
T ss_dssp CSSSSSCHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHHHHHSCCCCCCHHHHHHHHHHHHHTTSEEEECC-------
T ss_pred HHHHcCCHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHhCCCEEeecc-cCCCCC
Confidence 35678999999999877652 445555544 44 55511 2567899999999999999976532 112233
Q ss_pred eEEeeccc
Q 026766 79 HLMAVEFE 86 (233)
Q Consensus 79 ~Yml~~le 86 (233)
.|.++.|.
T Consensus 380 ~~~~~~l~ 387 (412)
T 1w5s_A 380 RTTLFRLA 387 (412)
T ss_dssp -CCEEEEC
T ss_pred ceeEEEeC
Confidence 45555554
No 278
>2gqq_A Leucine-responsive regulatory protein; helix-turn-helix, transcription; 3.20A {Escherichia coli} PDB: 2l4a_A
Probab=79.30 E-value=0.31 Score=38.73 Aligned_cols=50 Identities=14% Similarity=0.307 Sum_probs=41.6
Q ss_pred CCChHHHHHHHHHHhhCCCcccHHHHHHHhhcCCChHHHHHHHHHHHhCCCcee
Q 026766 15 SLTDHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKE 68 (233)
Q Consensus 15 ~L~~~e~lVy~~I~~aG~~GIw~~dik~~t~~~l~~~~v~k~LK~Le~k~lIK~ 68 (233)
.++.-+..|+..+...+. +..++|.+++ |++.+.|+++|+.|++.|+|+.
T Consensus 10 ~~d~l~~~Il~~l~~~~~--ls~~eLa~~l--gvSr~~vr~al~~L~~~Gli~~ 59 (163)
T 2gqq_A 10 DLDRIDRNILNELQKDGR--ISNVELSKRV--GLSPTPCLERVRRLERQGFIQG 59 (163)
T ss_dssp -CCSHHHHHHHHHHHCSS--CCTTGGGTSS--SCCTTTSSSTHHHHHHHTSEEE
T ss_pred chhHHHHHHHHHHHhCCC--CCHHHHHHHH--CcCHHHHHHHHHHHHHCCcEEE
Confidence 366667777776655444 7899999999 9999999999999999999986
No 279
>3q9s_A DNA-binding response regulator; DNA binding protein; 2.40A {Deinococcus radiodurans}
Probab=79.13 E-value=2.3 Score=35.39 Aligned_cols=56 Identities=16% Similarity=0.193 Sum_probs=40.6
Q ss_pred CCChHHHHHHHHHHhhCCCcccHHHHHHHh-h--cCCChHHHHH----HHHHHHhC---CCceeee
Q 026766 15 SLTDHERLIYDVIRSKQDMGIWTRDMKREL-R--VNLPDNIVTK----SIKSLQNK---SLIKEVV 70 (233)
Q Consensus 15 ~L~~~e~lVy~~I~~aG~~GIw~~dik~~t-~--~~l~~~~v~k----~LK~Le~k---~lIK~vk 70 (233)
.||+-|..|+.++.+..+++...++|..++ + .++..++|.. +.++|... .+|+.|.
T Consensus 182 ~LT~rE~evL~ll~~g~~~~~s~~eIa~~l~~~~l~~s~~TV~~hi~~lr~KL~~~~~~~~I~tvr 247 (249)
T 3q9s_A 182 RLSPKEFDILALLIRQPGRVYSRQEIGQEIWQGRLPEGSNVVDVHMANLRAKLRDLDGYGLLRTVR 247 (249)
T ss_dssp CCCHHHHHHHHHHHHSTTCCCCHHHHHHHHHTTCSCTTCSHHHHHHHHHHHHHCCCSCCCSSCCC-
T ss_pred ecCHHHHHHHHHHHHCCCceEcHHHHHHHhcCCCCCCCccCHHHHHHHHHHHhhcCCCCCeEEecc
Confidence 599999999999999999999999999963 1 0667677655 45555533 3555443
No 280
>2qlz_A Transcription factor PF0095; 2.50A {Pyrococcus furiosus} PDB: 2quf_A
Probab=78.90 E-value=2 Score=36.85 Aligned_cols=36 Identities=17% Similarity=0.172 Sum_probs=32.9
Q ss_pred CcccHHHHHHHhhcCCChHHHHHHHHHHHhCCCceeee
Q 026766 33 MGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVV 70 (233)
Q Consensus 33 ~GIw~~dik~~t~~~l~~~~v~k~LK~Le~k~lIK~vk 70 (233)
.+....+|..++ |++.++|+..|+.|.+.|+|+..+
T Consensus 177 ~~~t~~~la~~~--~l~~~~V~~~l~~L~~~~~v~~~~ 212 (232)
T 2qlz_A 177 GRATVEELSDRL--NLKEREVREKISEMARFVPVKIIN 212 (232)
T ss_dssp SEEEHHHHHHHH--TCCHHHHHHHHHHHTTTSCEEEET
T ss_pred CCCCHHHHHHHh--CcCHHHHHHHHHHHHhcCCeEEec
Confidence 458899999999 999999999999999999998654
No 281
>1wdc_B Scallop myosin; calcium binding protein, muscle protein; 2.00A {Argopecten irradians} SCOP: a.39.1.5 PDB: 1kk7_Y 1kqm_B* 1kwo_B* 1l2o_B* 1qvi_Y* 1s5g_Y* 1sr6_B 1b7t_Y 3jtd_B 3jvt_B 1scm_B 1kk8_B* 1dfk_Y 1dfl_Y* 2w4t_Y 2w4v_Y 2w4w_Y 2otg_B* 2os8_B* 3pn7_B ...
Probab=78.73 E-value=17 Score=26.76 Aligned_cols=104 Identities=16% Similarity=0.229 Sum_probs=62.6
Q ss_pred CCCCCCChHHH----HHHHHHHhhCCCcccHHHHHHHh---hcCCChHHHHHHHHHHHhCCCceeeecccCCCeeeEEee
Q 026766 11 APSDSLTDHER----LIYDVIRSKQDMGIWTRDMKREL---RVNLPDNIVTKSIKSLQNKSLIKEVVNIHSKGKKHLMAV 83 (233)
Q Consensus 11 ~~~~~L~~~e~----lVy~~I~~aG~~GIw~~dik~~t---~~~l~~~~v~k~LK~Le~k~lIK~vksV~~~~rK~Yml~ 83 (233)
.....|++++. .++..+...|+--|...+++.-+ |.+++...+...++.
T Consensus 7 ~~~~~l~~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~g~~~~~~~~~~~~~~------------------------ 62 (156)
T 1wdc_B 7 GVLTKLPQKQIQEMKEAFSMIDVDRDGFVSKEDIKAISEQLGRAPDDKELTAMLKE------------------------ 62 (156)
T ss_dssp -----CCHHHHHHHHHHHHHHCTTCSSSCCHHHHHHHHHHHSSCCCHHHHHHHHTT------------------------
T ss_pred chhccCCHHHHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHh------------------------
Confidence 34667887653 45666666676668888887654 224555555444420
Q ss_pred ccccCCCcccCCcccCCCCCH-HHHHHHHHH------------HHHHhh--hCCCCCHHHHHHHHHHhCCcccccCHHHH
Q 026766 84 EFEPSKEISGGAWYSEGSLDT-EFIKVVKSQ------------CLKQII--KLKVATLEGISDSIKRSGAFKVDLTKQQI 148 (233)
Q Consensus 84 ~lePs~eiTGG~wy~d~e~D~-efI~~l~~~------------~~~~i~--~~~~~T~~~I~~~I~~~~i~~~~Ls~~di 148 (233)
.||.+|- ||+..+... +++.+. ..+++|.+|+..++...|. .++.+++
T Consensus 63 --------------~~g~i~~~eF~~~~~~~~~~~~~~~~l~~~F~~~D~d~~G~I~~~el~~~l~~~g~---~~~~~~~ 125 (156)
T 1wdc_B 63 --------------APGPLNFTMFLSIFSDKLSGTDSEETIRNAFAMFDEQETKKLNIEYIKDLLENMGD---NFNKDEM 125 (156)
T ss_dssp --------------SSSCCCHHHHHHHHHHHTCSCCCHHHHHHHHHTTCTTCCSCEEHHHHHHHHHHSSS---CCCHHHH
T ss_pred --------------CCCcCcHHHHHHHHHHHhcCCChHHHHHHHHHHHCcCCCCccCHHHHHHHHHHhCC---CCCHHHH
Confidence 1344443 455554432 122221 3578999999999998874 5999999
Q ss_pred HHHHHHH
Q 026766 149 EEIVRAL 155 (233)
Q Consensus 149 ~~il~~L 155 (233)
+.+++.+
T Consensus 126 ~~~~~~~ 132 (156)
T 1wdc_B 126 RMTFKEA 132 (156)
T ss_dssp HHHHHHC
T ss_pred HHHHHhc
Confidence 9999875
No 282
>2wv0_A YVOA, HTH-type transcriptional repressor YVOA; DNA-binding, transcription regulation, transcriptional regulator, GNTR/HUTC family; 2.40A {Bacillus subtilis}
Probab=78.61 E-value=1.9 Score=36.50 Aligned_cols=32 Identities=16% Similarity=0.339 Sum_probs=29.7
Q ss_pred cHHHHHHHhhcCCChHHHHHHHHHHHhCCCceee
Q 026766 36 WTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEV 69 (233)
Q Consensus 36 w~~dik~~t~~~l~~~~v~k~LK~Le~k~lIK~v 69 (233)
..++|..+. +++..+|+++|+.|++.|+|...
T Consensus 36 se~~La~~~--~vSr~tvr~Al~~L~~~G~i~~~ 67 (243)
T 2wv0_A 36 SEREYAEQF--GISRMTVRQALSNLVNEGLLYRL 67 (243)
T ss_dssp CHHHHHHHH--TCCHHHHHHHHHHHHHTTSEEEC
T ss_pred CHHHHHHHH--CcCHHHHHHHHHHHHHCCcEEEe
Confidence 579999999 99999999999999999999753
No 283
>1bia_A BIRA bifunctional protein; transcription regulation; 2.30A {Escherichia coli} SCOP: a.4.5.1 b.34.1.1 d.104.1.2 PDB: 1bib_A* 1hxd_A* 2ewn_A*
Probab=78.40 E-value=3.7 Score=36.30 Aligned_cols=48 Identities=8% Similarity=0.048 Sum_probs=39.9
Q ss_pred ChHHHHHHHHHHhhCCCcccHHHHHHHhhcCCChHHHHHHHHHHHhCCCcee
Q 026766 17 TDHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKE 68 (233)
Q Consensus 17 ~~~e~lVy~~I~~aG~~GIw~~dik~~t~~~l~~~~v~k~LK~Le~k~lIK~ 68 (233)
.+-...|+.++. .+.-+...+|..++ +++.++|.|.|+.|++.|++..
T Consensus 4 ~~r~~~Il~~L~--~~~~~s~~eLa~~l--~vS~~ti~r~l~~L~~~G~~i~ 51 (321)
T 1bia_A 4 NTVPLKLIALLA--NGEFHSGEQLGETL--GMSRAAINKHIQTLRDWGVDVF 51 (321)
T ss_dssp CHHHHHHHHHHT--TSSCBCHHHHHHHH--TSCHHHHHHHHHHHHHTTCCCE
T ss_pred chHHHHHHHHHH--cCCCcCHHHHHHHH--CCCHHHHHHHHHHHHhCCCcEE
Confidence 344566788884 33459999999999 9999999999999999999853
No 284
>1jhg_A Trp operon repressor; complex (regulatory protein-peptide), DNA-binding regulatory complex (regulatory protein-peptide) complex; HET: TRP; 1.30A {Escherichia coli} SCOP: a.4.12.1 PDB: 1co0_A* 1mi7_R 1p6z_R 1wrp_R* 1zt9_A* 2oz9_R* 3ssw_R 3wrp_A 1rcs_A* 1wrs_R* 1wrt_R 2xdi_A 3ssx_R* 1trr_A* 1tro_A*
Probab=78.33 E-value=3.5 Score=31.18 Aligned_cols=43 Identities=30% Similarity=0.367 Sum_probs=31.0
Q ss_pred CChHHHHH----HHHHHhhCCCc-ccHHHHHHHhhcCCChHHHHHHHHHHH
Q 026766 16 LTDHERLI----YDVIRSKQDMG-IWTRDMKRELRVNLPDNIVTKSIKSLQ 61 (233)
Q Consensus 16 L~~~e~lV----y~~I~~aG~~G-Iw~~dik~~t~~~l~~~~v~k~LK~Le 61 (233)
||+.|+.+ |.+...-. .| ..+++|.+++ |.+..+|+|+=+.|.
T Consensus 36 LT~~Er~~l~~R~~l~~~L~-~ge~TQREIA~~l--GiS~stISRi~r~L~ 83 (101)
T 1jhg_A 36 LTPDEREALGTRVRIIEELL-RGEMSQRELKNEL--GAGIATITRGSNSLK 83 (101)
T ss_dssp SCHHHHHHHHHHHHHHHHHH-HCCSCHHHHHHHH--CCCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHH-cCCcCHHHHHHHH--CCChhhhhHHHHHHH
Confidence 67877755 33332222 34 9999999999 999999999866664
No 285
>1kgs_A DRRD, DNA binding response regulator D; DNA-binding protein, ALPH-beta sandwich, winged-helix, helix helix, DNA binding protein; HET: DNA MSE; 1.50A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1 PDB: 3nnn_A*
Probab=78.14 E-value=3.1 Score=33.10 Aligned_cols=47 Identities=17% Similarity=0.264 Sum_probs=38.8
Q ss_pred CCCChHHHHHHHHHHhhCCCcccHHHHHHHhhcC-----CChHHHHHHHHHHHh
Q 026766 14 DSLTDHERLIYDVIRSKQDMGIWTRDMKRELRVN-----LPDNIVTKSIKSLQN 62 (233)
Q Consensus 14 ~~L~~~e~lVy~~I~~aG~~GIw~~dik~~t~~~-----l~~~~v~k~LK~Le~ 62 (233)
..||+-|..|+.++.+..++.+..++|..++ + +..++|...++.|-+
T Consensus 150 ~~Lt~rE~~vL~~l~~~~~~~~s~~eIa~~l--~~~~~~~s~~tv~~hi~~l~~ 201 (225)
T 1kgs_A 150 IDLTKKEYQILEYLVMNKNRVVTKEELQEHL--WSFDDEVFSDVLRSHIKNLRK 201 (225)
T ss_dssp ECCCHHHHHHHHHHHHTTTSCEEHHHHHHHC--C-----CHHHHHHHHHHHHHH
T ss_pred EecCHHHHHHHHHHHhCCCcccCHHHHHHHh--cCCCCCCCcchHHHHHHHHHH
Confidence 3699999999999999988999999999999 7 777777666555443
No 286
>2heo_A Z-DNA binding protein 1; protein DLM1-Z-DNA complex, immune system-DNA complex; 1.70A {Mus musculus} PDB: 1j75_A
Probab=77.87 E-value=2.6 Score=28.84 Aligned_cols=47 Identities=6% Similarity=0.157 Sum_probs=38.5
Q ss_pred HHHHHHHHHhhhC-CCCCHHHHHHHHHHhCCcccccCHHHHHHHHHHHhcCCeEEE
Q 026766 109 VVKSQCLKQIIKL-KVATLEGISDSIKRSGAFKVDLTKQQIEEIVRALVLDNQIME 163 (233)
Q Consensus 109 ~l~~~~~~~i~~~-~~~T~~~I~~~I~~~~i~~~~Ls~~di~~il~~Lv~Dg~ie~ 163 (233)
..++.++.+|... ...|..||++.+ | ++..-|..+|++|.-+|.|+.
T Consensus 10 ~~~~~IL~~L~~~~~~~s~~eLA~~l---g-----lsr~tv~~~l~~L~~~G~I~~ 57 (67)
T 2heo_A 10 NLEQKILQVLSDDGGPVAIFQLVKKC---Q-----VPKKTLNQVLYRLKKEDRVSS 57 (67)
T ss_dssp HHHHHHHHHHHHHCSCEEHHHHHHHH---C-----SCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHHHHHHHHHcCCCcCHHHHHHHH---C-----cCHHHHHHHHHHHHHCCcEec
Confidence 4577788888765 468999988765 3 778999999999999999876
No 287
>1hw1_A FADR, fatty acid metabolism regulator protein; helix-turn-helix, helix bundle, transcription; 1.50A {Escherichia coli} SCOP: a.4.5.6 a.78.1.1 PDB: 1hw2_A 1e2x_A 1h9g_A* 1h9t_A
Probab=77.60 E-value=3.6 Score=33.95 Aligned_cols=54 Identities=9% Similarity=0.153 Sum_probs=41.1
Q ss_pred HHHHHHHhhC-------CCcc-cHHHHHHHhhcCCChHHHHHHHHHHHhCCCceeeecccCCCeeeEEe
Q 026766 22 LIYDVIRSKQ-------DMGI-WTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVVNIHSKGKKHLMA 82 (233)
Q Consensus 22 lVy~~I~~aG-------~~GI-w~~dik~~t~~~l~~~~v~k~LK~Le~k~lIK~vksV~~~~rK~Yml 82 (233)
.||+.|.+.= +.=+ .-++|..+. |...++|+.+|+.|+..|||... +++-+|+.
T Consensus 11 ~v~~~l~~~I~~g~l~pG~~LPsE~eLa~~~--gVSR~tVReAL~~L~~eGlv~~~-----~g~G~~V~ 72 (239)
T 1hw1_A 11 FAEEYIIESIWNNRFPPGTILPAERELSELI--GVTRTTLREVLQRLARDGWLTIQ-----HGKPTKVN 72 (239)
T ss_dssp HHHHHHHHHHHTTSSCTTSBCCCHHHHHHHH--TCCHHHHHHHHHHHHHTTSEEEE-----TTEEEEEC
T ss_pred HHHHHHHHHHHcCCCCCCCCCCCHHHHHHHH--CCCHHHHHHHHHHHHHCCcEEEe-----cCCCcEee
Confidence 5666666432 2234 579999999 99999999999999999999764 35556653
No 288
>3cuq_B Vacuolar protein-sorting-associated protein 36; ESCRT, MBV, VPS, nucleus, protein transport, transc transcription regulation, transport, endosome; 2.61A {Homo sapiens} PDB: 2zme_B
Probab=77.23 E-value=24 Score=29.77 Aligned_cols=106 Identities=8% Similarity=0.030 Sum_probs=71.4
Q ss_pred HhhCCCcccHHHHHHHhhc--C---CChHHHHHHHHHHHhCCCceeeecccCCCeeeEEeeccccCCCcccCCcccCCCC
Q 026766 28 RSKQDMGIWTRDMKRELRV--N---LPDNIVTKSIKSLQNKSLIKEVVNIHSKGKKHLMAVEFEPSKEISGGAWYSEGSL 102 (233)
Q Consensus 28 ~~aG~~GIw~~dik~~t~~--~---l~~~~v~k~LK~Le~k~lIK~vksV~~~~rK~Yml~~lePs~eiTGG~wy~d~e~ 102 (233)
..+|.. |.-.|++....+ + +++..+.++++.|+..|+==++..+. +.++++ ... +.++
T Consensus 90 ~~~GG~-I~L~dl~~~~nraRG~~lVSp~Dl~~A~~~l~~Lg~~~~l~~~~--sg~~vv-qs~-------------~~~~ 152 (218)
T 3cuq_B 90 EERGGI-MSLTEVYCLVNRARGMELLSPEDLVNACKMLEALKLPLRLRVFD--SGVMVI-ELQ-------------SHKE 152 (218)
T ss_dssp HHTTSE-EEHHHHHHHHHHTCSSSCCCHHHHHHHHHTTTTTTCSEEEEECT--TSBEEE-EET-------------TCCG
T ss_pred HhCCCe-EEHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHHcCCCEEEEEEC--CCcEEE-EcC-------------CCch
Confidence 344544 788888888711 2 89999999999999988754555554 223232 111 1122
Q ss_pred CHHHHHHHHHHHHHHhhhCCCCCHHHHHHHHHHhCCcccccCHHHHHHHHHHHhcCCeEEE
Q 026766 103 DTEFIKVVKSQCLKQIIKLKVATLEGISDSIKRSGAFKVDLTKQQIEEIVRALVLDNQIME 163 (233)
Q Consensus 103 D~efI~~l~~~~~~~i~~~~~~T~~~I~~~I~~~~i~~~~Ls~~di~~il~~Lv~Dg~ie~ 163 (233)
+.....++.+++..+++|+.++.+-+ | .+..=.++.|+.|+-+|.+-.
T Consensus 153 -----~~~~~~il~~~~~~g~vt~~~la~~l---~-----ws~~~a~e~L~~~e~~G~l~~ 200 (218)
T 3cuq_B 153 -----EEMVASALETVSEKGSLTSEEFAKLV---G-----MSVLLAKERLLLAEKMGHLCR 200 (218)
T ss_dssp -----GGGHHHHHHHHHHTSCBCHHHHHHHH---T-----CCHHHHHHHHHHHHHTTSEEE
T ss_pred -----HHHHHHHHHHHHHCCCcCHHHHHHHh---C-----CCHHHHHHHHHHHHHcCCEEE
Confidence 12334445556678999999999766 3 667778888999999999864
No 289
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=77.14 E-value=3.7 Score=29.18 Aligned_cols=42 Identities=14% Similarity=0.195 Sum_probs=33.9
Q ss_pred CCCCChHHHHHHHHHHhhCCCcccHHHHHHHhhcCCChHHHHHHHHH
Q 026766 13 SDSLTDHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKS 59 (233)
Q Consensus 13 ~~~L~~~e~lVy~~I~~aG~~GIw~~dik~~t~~~l~~~~v~k~LK~ 59 (233)
+..|++.++.|+.+.. -.|...++|...+ |++.++|.+.+..
T Consensus 35 l~~L~~~~r~vl~l~~---~~g~s~~eIA~~l--gis~~tV~~~l~r 76 (92)
T 3hug_A 35 LAQLSAEHRAVIQRSY---YRGWSTAQIATDL--GIAEGTVKSRLHY 76 (92)
T ss_dssp HHTSCHHHHHHHHHHH---TSCCCHHHHHHHH--TSCHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHH---HcCCCHHHHHHHH--CcCHHHHHHHHHH
Confidence 4579999999887754 4578999999999 9999888665544
No 290
>1a04_A Nitrate/nitrite response regulator protein NARL; signal transduction protein, response regulators, two- component systems; 2.20A {Escherichia coli} SCOP: a.4.6.2 c.23.1.1 PDB: 1rnl_A
Probab=77.06 E-value=4 Score=32.37 Aligned_cols=45 Identities=27% Similarity=0.437 Sum_probs=38.6
Q ss_pred CCCCChHHHHHHHHHHhhCCCcccHHHHHHHhhcCCChHHHHHHHHHHHhC
Q 026766 13 SDSLTDHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNK 63 (233)
Q Consensus 13 ~~~L~~~e~lVy~~I~~aG~~GIw~~dik~~t~~~l~~~~v~k~LK~Le~k 63 (233)
...||+-|..|+.++.+ |...++|..++ ++..++|...++.|-+|
T Consensus 152 ~~~Lt~rE~~vl~~l~~----g~s~~~Ia~~l--~is~~TV~~hi~~i~~K 196 (215)
T 1a04_A 152 VNQLTPRERDILKLIAQ----GLPNKMIARRL--DITESTVKVHVKHMLKK 196 (215)
T ss_dssp GGGSCHHHHHHHHHHHT----TCCHHHHHHHH--TCCHHHHHHHHHHHHHH
T ss_pred ccCCCHHHHHHHHHHHc----CCCHHHHHHHH--CCCHHHHHHHHHHHHHH
Confidence 45699999999999975 46899999999 99999999888887664
No 291
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=76.61 E-value=5.3 Score=31.95 Aligned_cols=54 Identities=13% Similarity=0.124 Sum_probs=44.6
Q ss_pred HHHHHHHHhhhC-CCCCHHHHHHHHHHh--CCcccccCHHHHHHHHHHHhcCCeEEEEee
Q 026766 110 VKSQCLKQIIKL-KVATLEGISDSIKRS--GAFKVDLTKQQIEEIVRALVLDNQIMEVKS 166 (233)
Q Consensus 110 l~~~~~~~i~~~-~~~T~~~I~~~I~~~--~i~~~~Ls~~di~~il~~Lv~Dg~ie~v~~ 166 (233)
-|..++++|.+. ..+|++||++.+++. + -.+|..-|-..|+.|+=.|.|.++..
T Consensus 34 qR~~IL~~L~~~~~h~sA~eI~~~l~~~~~~---~~is~aTVYRtL~~L~e~Glv~~i~~ 90 (162)
T 4ets_A 34 QREVLLKTLYHSDTHYTPESLYMEIKQAEPD---LNVGIATVYRTLNLLEEAEMVTSISF 90 (162)
T ss_dssp HHHHHHHHHHSCCSCBCHHHHHHHHHHHCGG---GCCCHHHHHHHHHHHHHTTSEEECC-
T ss_pred HHHHHHHHHHhCCCCCCHHHHHHHHHhhcCC---CCCCHHHHHHHHHHHHHCCCEEEEEe
Confidence 356678888654 689999999999987 5 24789999999999999999999853
No 292
>3t72_q RNA polymerase sigma factor RPOD, DNA-directed RN polymerase subunit beta; winged-helix motif, transcription activation, DNA-binding; 4.33A {Escherichia coli} PDB: 1tlh_B
Probab=76.59 E-value=4.1 Score=30.29 Aligned_cols=48 Identities=8% Similarity=0.194 Sum_probs=37.4
Q ss_pred CCCCCChHHHHHHHHHHh-hCCCcccHHHHHHHhhcCCChHHHHH----HHHHHH
Q 026766 12 PSDSLTDHERLIYDVIRS-KQDMGIWTRDMKRELRVNLPDNIVTK----SIKSLQ 61 (233)
Q Consensus 12 ~~~~L~~~e~lVy~~I~~-aG~~GIw~~dik~~t~~~l~~~~v~k----~LK~Le 61 (233)
.+..||+.|+.|+.+-.- .|..|...++|...+ |++..+|.. ++++|.
T Consensus 16 aL~~Lp~reR~Vi~Lry~l~~~e~~s~~EIA~~l--giS~~tVr~~~~rAlkkLR 68 (99)
T 3t72_q 16 VLAGLTAREAKVLRMRFGIDMNTDYTLEEVGKQF--DVTRERIRQIEAKALRKLR 68 (99)
T ss_pred HHHcCCHHHHHHHHHHHhcCCCCCCCHHHHHHHH--CcCHHHHHHHHHHHHHHHH
Confidence 356899999999988653 456899999999999 999877654 455554
No 293
>2q0o_A Probable transcriptional activator protein TRAR; helix-turn-helix, two-helix coiled coil; HET: LAE; 2.00A {Rhizobium SP}
Probab=76.54 E-value=4.6 Score=33.51 Aligned_cols=45 Identities=13% Similarity=0.047 Sum_probs=38.6
Q ss_pred CCCCChHHHHHHHHHHhhCCCcccHHHHHHHhhcCCChHHHHHHHHHHHhC
Q 026766 13 SDSLTDHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNK 63 (233)
Q Consensus 13 ~~~L~~~e~lVy~~I~~aG~~GIw~~dik~~t~~~l~~~~v~k~LK~Le~k 63 (233)
...||+.|+.|+.++. +|...++|...+ +++.++|+..++.+.+|
T Consensus 173 ~~~Lt~~e~~vl~~~~----~g~s~~eIa~~l--~is~~tV~~~~~~~~~k 217 (236)
T 2q0o_A 173 KQMLSPREMLCLVWAS----KGKTASVTANLT--GINARTVQHYLDKARAK 217 (236)
T ss_dssp GGSCCHHHHHHHHHHH----TTCCHHHHHHHH--CCCHHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHH----cCCCHHHHHHHH--CcCHHHHHHHHHHHHHH
Confidence 4569999999998863 689999999999 99999999888877653
No 294
>2jpc_A SSRB; DNA binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium}
Probab=76.26 E-value=3.1 Score=26.89 Aligned_cols=39 Identities=21% Similarity=0.323 Sum_probs=31.0
Q ss_pred HHHHHHHHHHhhCCCcccHHHHHHHhhcCCChHHHHHHHHHHHhC
Q 026766 19 HERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNK 63 (233)
Q Consensus 19 ~e~lVy~~I~~aG~~GIw~~dik~~t~~~l~~~~v~k~LK~Le~k 63 (233)
.|+.|+.++ ..|...++|...+ +++.++|...++.+.+|
T Consensus 2 re~~vl~l~----~~g~s~~eIA~~l--~is~~tV~~~~~~~~~k 40 (61)
T 2jpc_A 2 RERQVLKLI----DEGYTNHGISEKL--HISIKTVETHRMNMMRK 40 (61)
T ss_dssp HHHHHHHHH----HTSCCSHHHHHHT--CSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH----HcCCCHHHHHHHh--CCCHHHHHHHHHHHHHH
Confidence 466677664 3478999999999 99999999888776543
No 295
>2elh_A CG11849-PA, LD40883P; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Drosophila melanogaster}
Probab=76.26 E-value=7.5 Score=27.51 Aligned_cols=43 Identities=19% Similarity=0.269 Sum_probs=32.1
Q ss_pred CCCChHHH-HHHHHHHhhCCCcccHHHHHHHhhcCCChHHHHHHHHHHHh
Q 026766 14 DSLTDHER-LIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQN 62 (233)
Q Consensus 14 ~~L~~~e~-lVy~~I~~aG~~GIw~~dik~~t~~~l~~~~v~k~LK~Le~ 62 (233)
...+++.+ .+..++ ..|...++|.+++ +++..+|.+-++..+.
T Consensus 21 ~~ys~e~k~~~v~~~----~~g~s~~~iA~~~--gIs~sTl~rW~k~~~~ 64 (87)
T 2elh_A 21 RSLTPRDKIHAIQRI----HDGESKASVARDI--GVPESTLRGWCKNEDK 64 (87)
T ss_dssp SSCCHHHHHHHHHHH----HHTCCHHHHHHHH--TCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHH----HCCCCHHHHHHHH--CcCHHHHHHHHHHHHh
Confidence 35677664 333333 2468899999999 9999999999987764
No 296
>2mys_B Myosin; muscle protein, motor protein; HET: MLY; 2.80A {Gallus gallus} SCOP: a.39.1.5 PDB: 1i84_U* 1m8q_B* 1mvw_B* 1o18_E* 1o19_B* 1o1a_B* 1o1b_B* 1o1c_B* 1o1d_B* 1o1e_B* 1o1f_B* 1o1g_B* 2w4a_B 2w4g_B 2w4h_B
Probab=76.25 E-value=22 Score=26.53 Aligned_cols=35 Identities=11% Similarity=0.130 Sum_probs=29.4
Q ss_pred hCCCCCHHHHHHHHHHhCCcccccCHHHHHHHHHHHhc
Q 026766 120 KLKVATLEGISDSIKRSGAFKVDLTKQQIEEIVRALVL 157 (233)
Q Consensus 120 ~~~~~T~~~I~~~I~~~~i~~~~Ls~~di~~il~~Lv~ 157 (233)
..+++|.+|+..++...|. .++.++++.+++.+=.
T Consensus 108 ~~G~I~~~el~~~l~~~g~---~~~~~~~~~~~~~~D~ 142 (166)
T 2mys_B 108 GKGSIKKSFLEELLTTGGG---RFTPEEIKNMWAAFPP 142 (166)
T ss_pred CCcceeHHHHHHHHHHcCC---CCCHHHHHHHHHhcCC
Confidence 3589999999999998873 5999999999987633
No 297
>3klo_A Transcriptional regulator VPST; REC domain, HTH domain, DNA-binding, transcription regulation; HET: C2E TAR; 2.80A {Vibrio cholerae} PDB: 3kln_A*
Probab=75.97 E-value=4 Score=32.83 Aligned_cols=44 Identities=23% Similarity=0.355 Sum_probs=39.1
Q ss_pred CCCChHHHHHHHHHHhhCCCcccHHHHHHHhhcCCChHHHHHHHHHHHhC
Q 026766 14 DSLTDHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNK 63 (233)
Q Consensus 14 ~~L~~~e~lVy~~I~~aG~~GIw~~dik~~t~~~l~~~~v~k~LK~Le~k 63 (233)
..||+-|..|+.++.+ |...++|..++ +++.++|...++.|-+|
T Consensus 158 ~~Lt~rE~~vL~~l~~----g~s~~~Ia~~l--~~s~~Tv~~~i~~l~~K 201 (225)
T 3klo_A 158 AKLTKREQQIIKLLGS----GASNIEIADKL--FVSENTVKTHLHNVFKK 201 (225)
T ss_dssp HTSCHHHHHHHHHHTT----TCCHHHHHHHT--TCCHHHHHHHHHHHTTT
T ss_pred ccCCHHHHHHHHHHHc----CCCHHHHHHHh--CCCHHHHHHHHHHHHHH
Confidence 4699999999999864 78999999999 99999999999998765
No 298
>1l3l_A Transcriptional activator protein TRAR; helix-turn-helix DNA binding motif, alpha/beta/alpha sandwich; HET: LAE; 1.66A {Agrobacterium tumefaciens} SCOP: a.4.6.2 d.110.5.1 PDB: 1h0m_A*
Probab=75.68 E-value=5 Score=33.25 Aligned_cols=45 Identities=13% Similarity=0.111 Sum_probs=38.5
Q ss_pred CCCCChHHHHHHHHHHhhCCCcccHHHHHHHhhcCCChHHHHHHHHHHHhC
Q 026766 13 SDSLTDHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNK 63 (233)
Q Consensus 13 ~~~L~~~e~lVy~~I~~aG~~GIw~~dik~~t~~~l~~~~v~k~LK~Le~k 63 (233)
...||+.|+.|+.++ + .|...++|...+ +++.++|+..++.+.+|
T Consensus 171 ~~~Lt~~e~~vl~~~--~--~g~s~~eIa~~l--~is~~tV~~~~~~~~~k 215 (234)
T 1l3l_A 171 AAWLDPKEATYLRWI--A--VGKTMEEIADVE--GVKYNSVRVKLREAMKR 215 (234)
T ss_dssp CCCCCHHHHHHHHHH--T--TTCCHHHHHHHH--TCCHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHH--H--cCCCHHHHHHHH--CcCHHHHHHHHHHHHHH
Confidence 457999999999886 2 689999999999 99999999888876543
No 299
>2hgc_A YJCQ protein; SR346, structure, autostructure, NESG, PSI-2, northeast structural genomics consortium, protein structure initiative; NMR {Bacillus subtilis} SCOP: a.4.5.77
Probab=75.55 E-value=3.8 Score=31.16 Aligned_cols=57 Identities=11% Similarity=0.153 Sum_probs=40.8
Q ss_pred HHHHHHHhhCCCcccHHHHHHHhhcCCChHHHHHHHHHHHhCCCceeeecccCCCeeeEEeeccccCC
Q 026766 22 LIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVVNIHSKGKKHLMAVEFEPSK 89 (233)
Q Consensus 22 lVy~~I~~aG~~GIw~~dik~~t~~~l~~~~v~k~LK~Le~k~lIK~vksV~~~~rK~Yml~~lePs~ 89 (233)
.|+..+.+.+.. |+ ...+ +++.....++|+.|.+.|||+-+.-... -+.++++.|..
T Consensus 9 kIL~~L~~~~~~--is---~e~l--~Ise~~~~~il~~L~d~GyI~Gv~~~~~----~~~i~~~~~~I 65 (102)
T 2hgc_A 9 AILKEIFEGNTP--LS---ENDI--GVTEDQFDDAVNFLKREGYIIGVHYSDD----RPHLYKLGPEL 65 (102)
T ss_dssp HHHHHHHHHCSC--CC---HHHH--TSCHHHHHHHHHHHHHHTSEECCEESSS----SEECCSSCCEE
T ss_pred HHHHHHHhCCCc--CC---HHhc--CCCHHHHHHHHHHHHHCCCccceEEEeC----cceeeccCceE
Confidence 455556664433 33 3567 9999999999999999999988765554 46777776443
No 300
>2o3f_A Putative HTH-type transcriptional regulator YBBH; APC85504, putative transcriptional regulator YBBH; HET: MLY; 1.75A {Bacillus subtilis} SCOP: a.4.1.20
Probab=75.15 E-value=2.7 Score=31.72 Aligned_cols=51 Identities=22% Similarity=0.176 Sum_probs=43.4
Q ss_pred CCCCChHHHHHHHHHHhhCCC--cccHHHHHHHhhcCCChHHHHHHHHHHHhCCC
Q 026766 13 SDSLTDHERLIYDVIRSKQDM--GIWTRDMKRELRVNLPDNIVTKSIKSLQNKSL 65 (233)
Q Consensus 13 ~~~L~~~e~lVy~~I~~aG~~--GIw~~dik~~t~~~l~~~~v~k~LK~Le~k~l 65 (233)
..+|++.|+.|.++|.+.... .+..++|.+++ +..+.+|.|-.|+|-=+|+
T Consensus 16 ~~~ls~~e~~ia~yil~~~~~~~~~si~elA~~~--~vS~aTv~Rf~kklG~~gf 68 (111)
T 2o3f_A 16 XHXLPPSERKLADYILAHPHXAIESTVNEISALA--NSSDAAVIRLCXSLGLKGF 68 (111)
T ss_dssp GGGSCHHHHHHHHHHHHCHHHHHTCCHHHHHHHT--TCCHHHHHHHHHHTTCSSH
T ss_pred hccCCHHHHHHHHHHHHChHHHHhcCHHHHHHHH--CCCHHHHHHHHHHcCCCCH
Confidence 357999999999999976543 58999999999 9999999999998865554
No 301
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=74.81 E-value=4.1 Score=28.78 Aligned_cols=49 Identities=16% Similarity=0.243 Sum_probs=41.6
Q ss_pred HHHHHHHHHhhhCC---CCCHHHHHHHHHHhCCcccccCHHHHHHHHHHHhcCCeEEEEe
Q 026766 109 VVKSQCLKQIIKLK---VATLEGISDSIKRSGAFKVDLTKQQIEEIVRALVLDNQIMEVK 165 (233)
Q Consensus 109 ~l~~~~~~~i~~~~---~~T~~~I~~~I~~~~i~~~~Ls~~di~~il~~Lv~Dg~ie~v~ 165 (233)
.+.+.++.+|...+ ..|+.||++-+. ++...|+..|..|.=+|.|+.+.
T Consensus 14 ~~~~~IL~~L~~~~~~~~~t~~eLA~~Lg--------vs~~tV~~~L~~L~~~G~I~~~g 65 (77)
T 1qgp_A 14 DQEQRILKFLEELGEGKATTAHDLSGKLG--------TPKKEINRVLYSLAKKGKLQKEA 65 (77)
T ss_dssp HHHHHHHHHHHHHCSSSCEEHHHHHHHHC--------CCHHHHHHHHHHHHHHTSEEEEC
T ss_pred HHHHHHHHHHHHcCCCCCcCHHHHHHHHC--------cCHHHHHHHHHHHHHCCCEEecC
Confidence 44677889999888 899999998764 66778999999999999998863
No 302
>3bwg_A Uncharacterized HTH-type transcriptional regulato; APC85486, YYDK, transcriptional regulator, structural genomi 2; 2.09A {Bacillus subtilis subsp} SCOP: a.4.5.6 d.190.1.2
Probab=74.63 E-value=2.9 Score=35.26 Aligned_cols=32 Identities=22% Similarity=0.339 Sum_probs=30.1
Q ss_pred cHHHHHHHhhcCCChHHHHHHHHHHHhCCCceee
Q 026766 36 WTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEV 69 (233)
Q Consensus 36 w~~dik~~t~~~l~~~~v~k~LK~Le~k~lIK~v 69 (233)
.-++|.++. +.+..+|+++|+.|++.|+|...
T Consensus 31 se~~La~~~--~vSr~tvr~Al~~L~~~g~i~~~ 62 (239)
T 3bwg_A 31 VLETLMAQF--EVSKSTITKSLELLEQKGAIFQV 62 (239)
T ss_dssp CHHHHHHHT--TCCHHHHHHHHHHHHHTTSEEEE
T ss_pred CHHHHHHHH--CCCHHHHHHHHHHHHHCCcEEEe
Confidence 688999999 99999999999999999999774
No 303
>2lhi_A Calmodulin, serine/threonine-protein phosphatase catalytic subunit A1; yeast calmodulin, CNA1, metal binding protein; NMR {Saccharomyces cerevisiae}
Probab=74.44 E-value=29 Score=27.09 Aligned_cols=120 Identities=10% Similarity=0.179 Sum_probs=67.7
Q ss_pred CCCChHH----HHHHHHHHhhCCCcccHHHHHHHh---hcCCChHHHHHHHHHHHhCCCceeeecccCCCeeeEEeeccc
Q 026766 14 DSLTDHE----RLIYDVIRSKQDMGIWTRDMKREL---RVNLPDNIVTKSIKSLQNKSLIKEVVNIHSKGKKHLMAVEFE 86 (233)
Q Consensus 14 ~~L~~~e----~lVy~~I~~aG~~GIw~~dik~~t---~~~l~~~~v~k~LK~Le~k~lIK~vksV~~~~rK~Yml~~le 86 (233)
.+||++| +.+++.++..|+--|...+|+.-+ |.+++...+...++.+-..+ .+.--|- ++
T Consensus 3 ~~Lt~eqi~elk~~F~~~D~d~dG~I~~~El~~~l~~lg~~~~~~~~~~~~~~~d~d~----------~~~i~~~--ef- 69 (176)
T 2lhi_A 3 SNLTEEQIAEFKEAFALFDKDNNGSISSSELATVMRSLGLSPSEAEVNDLMNEIDVDG----------NHQIEFS--EF- 69 (176)
T ss_dssp CCCCTTGGGHHHHHHHTTCSSCSSCBCHHHHHHHHHHHTCCCCHHHHHHHHTTTCSSC----------SSSBCTT--HH-
T ss_pred CcCCHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHcCCChhHHHHHHHHHHhCcCC----------CccchHH--HH-
Confidence 4677765 456777777787778888887765 33556666666554432211 0000000 00
Q ss_pred cCCCcccCCcccCCCCCHHHHHHHHHHHHHH-hhhCCCCCHHHHHHHHHHhCCcccccCHHHHHHHHHHHh
Q 026766 87 PSKEISGGAWYSEGSLDTEFIKVVKSQCLKQ-IIKLKVATLEGISDSIKRSGAFKVDLTKQQIEEIVRALV 156 (233)
Q Consensus 87 Ps~eiTGG~wy~d~e~D~efI~~l~~~~~~~-i~~~~~~T~~~I~~~I~~~~i~~~~Ls~~di~~il~~Lv 156 (233)
+ .++.......+--+.|+.+.-.| ....|+.|.+|+.+.+...|. .++.++++.+++..-
T Consensus 70 ----~---~~~~~~~~~~~~~~~l~~aF~~fD~d~~G~I~~~el~~~l~~~g~---~~~~~ei~~l~~~~d 130 (176)
T 2lhi_A 70 ----L---ALMSRQLKSNDSEQELLEAFKVFDKNGDGLISAAELKHVLTSIGE---KLTDAEVDDMLREVS 130 (176)
T ss_dssp ----H---HHHTSSCCSSHHHHHHHHHHHHHCSSCSSSBCHHHHHHHHHTTTC---CCCHHHHHHHHHHHH
T ss_pred ----H---HHHHHhcccCCcHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHcCc---ccchHHHHHHHHhhc
Confidence 0 00000000111123344333222 124689999999999998774 699999999998764
No 304
>3f8m_A GNTR-family protein transcriptional regulator; PHNF, HUTC, winged helix-TUR UTRA, DNA-binding, transcription regulation; 1.80A {Mycobacterium smegmatis}
Probab=73.11 E-value=7.4 Score=32.98 Aligned_cols=33 Identities=9% Similarity=0.262 Sum_probs=30.6
Q ss_pred cHHHHHHHhhcCCChHHHHHHHHHHHhCCCceeeec
Q 026766 36 WTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVVN 71 (233)
Q Consensus 36 w~~dik~~t~~~l~~~~v~k~LK~Le~k~lIK~vks 71 (233)
..++|.++. +....+|+++|+.|++.|+|.. +.
T Consensus 38 se~~La~~~--~vSr~tvr~Al~~L~~~G~i~~-~g 70 (248)
T 3f8m_A 38 AEREIAEQF--EVARETVRQALRELLIDGRVER-RG 70 (248)
T ss_dssp CHHHHHHHT--TCCHHHHHHHHHHHHHTTSEEE-ET
T ss_pred CHHHHHHHH--CcCHHHHHHHHHHHHHCCCEEe-CC
Confidence 689999999 9999999999999999999977 53
No 305
>1top_A Troponin C; contractIle system protein; 1.78A {Gallus gallus} SCOP: a.39.1.5 PDB: 1ncy_A 1ncz_A 1ncx_A 1ytz_C* 1yv0_C 1tnw_A 1tnx_A 5tnc_A 2w49_0 2w4u_0 4tnc_A 1a2x_A 1tcf_A 1tn4_A 2tn4_A 1aj4_A 1jc2_A 1fi5_A 1sbj_A 1scv_A ...
Probab=73.11 E-value=25 Score=25.76 Aligned_cols=36 Identities=14% Similarity=0.328 Sum_probs=30.6
Q ss_pred hCCCCCHHHHHHHHHHhCCcccccCHHHHHHHHHHHhcC
Q 026766 120 KLKVATLEGISDSIKRSGAFKVDLTKQQIEEIVRALVLD 158 (233)
Q Consensus 120 ~~~~~T~~~I~~~I~~~~i~~~~Ls~~di~~il~~Lv~D 158 (233)
..+++|.+|+.+++...| ..++.++++.+++.+-.|
T Consensus 109 ~~G~I~~~e~~~~l~~~g---~~~~~~~~~~~~~~~d~~ 144 (162)
T 1top_A 109 ADGFIDIEELGEILRATG---EHVTEEDIEDLMKDSDKN 144 (162)
T ss_dssp CSSCBCHHHHHHHHHTTT---CCCCHHHHHHHHHHHCTT
T ss_pred CCCcCcHHHHHHHHHHhC---CCCCHHHHHHHHHHhCCC
Confidence 358999999999999887 368999999999988544
No 306
>1ys7_A Transcriptional regulatory protein PRRA; response regulator, DNA binding domain, phosphorylation; 1.58A {Mycobacterium tuberculosis} SCOP: a.4.6.1 c.23.1.1 PDB: 1ys6_A
Probab=73.10 E-value=4.4 Score=32.38 Aligned_cols=47 Identities=17% Similarity=0.107 Sum_probs=37.7
Q ss_pred CCCChHHHHHHHHHHhhCCCcccHHHHHHHhhcC-----CChHHHHHHHHHHHh
Q 026766 14 DSLTDHERLIYDVIRSKQDMGIWTRDMKRELRVN-----LPDNIVTKSIKSLQN 62 (233)
Q Consensus 14 ~~L~~~e~lVy~~I~~aG~~GIw~~dik~~t~~~-----l~~~~v~k~LK~Le~ 62 (233)
..||+-|..|+.++.+..++-+..++|..++ . +..++|...++.|-+
T Consensus 158 ~~Lt~rE~~vL~~l~~g~~~~~s~~~Ia~~l--~~~~~~~s~~tv~~hi~~l~~ 209 (233)
T 1ys7_A 158 VDLTKREFDLLAVLAEHKTAVLSRAQLLELV--WGYDFAADTNVVDVFIGYLRR 209 (233)
T ss_dssp CCCCHHHHHHHHHHHHTTTCCBCHHHHHHHH--HCCCCC-CCCHHHHHHHHHHH
T ss_pred eccCHHHHHHHHHHHhCCCCeEcHHHHHHHh--cCcccCCCccCHHHHHHHHHH
Confidence 4699999999999999888889999999999 6 777776655555443
No 307
>3qp6_A CVIR transcriptional regulator; quorum sensing, agonist, antagonist, LUXR, acylated homoseri lactone, transcription factor; HET: HL6; 2.00A {Chromobacterium violaceum} PDB: 3qp5_A*
Probab=72.98 E-value=9.2 Score=32.65 Aligned_cols=45 Identities=18% Similarity=0.245 Sum_probs=39.8
Q ss_pred CCCCChHHHHHHHHHHhhCCCcccHHHHHHHhhcCCChHHHHHHHHHHHhC
Q 026766 13 SDSLTDHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNK 63 (233)
Q Consensus 13 ~~~L~~~e~lVy~~I~~aG~~GIw~~dik~~t~~~l~~~~v~k~LK~Le~k 63 (233)
...||+.|+.|+.++. +|...++|...+ +++.++|+..++.+-+|
T Consensus 195 ~~~Lt~re~~vl~~~~----~G~s~~eIA~~l--~is~~TV~~~~~~~~~k 239 (265)
T 3qp6_A 195 NMPLSQREYDIFHWMS----RGKTNWEIATIL--NISERTVKFHVANVIRK 239 (265)
T ss_dssp CCCCCHHHHHHHHHHH----TTCCHHHHHHHH--TSCHHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHH----cCCCHHHHHHHH--CcCHHHHHHHHHHHHHH
Confidence 4579999999999983 689999999999 99999999999887654
No 308
>3sxy_A Transcriptional regulator, GNTR family; transcription factor, metal-binding, structur genomics, PSI-2, protein structure initiative; 1.65A {Thermotoga maritima} PDB: 3dbw_A 3fms_A*
Probab=72.89 E-value=3.8 Score=33.58 Aligned_cols=46 Identities=17% Similarity=0.317 Sum_probs=37.2
Q ss_pred HHHHHHHhhCC-------CcccHHHHHHHhhcCCChHHHHHHHHHHHhCCCceee
Q 026766 22 LIYDVIRSKQD-------MGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEV 69 (233)
Q Consensus 22 lVy~~I~~aG~-------~GIw~~dik~~t~~~l~~~~v~k~LK~Le~k~lIK~v 69 (233)
.||..|.+.=- .=+..++|..+. |+..+.|+.+|+.|+..|||...
T Consensus 16 ~v~~~l~~~I~~g~l~pG~~L~e~~La~~l--gVSRtpVREAL~~L~~eGlv~~~ 68 (218)
T 3sxy_A 16 KVYNLLKEMILNHELKLGEKLNVRELSEKL--GISFTPVRDALLQLATEGLVKVV 68 (218)
T ss_dssp HHHHHHHHHHHTTSSCTTCEECHHHHHHHH--TCCHHHHHHHHHHHHHHTSEEEE
T ss_pred HHHHHHHHHHHhCCCCCCCEeCHHHHHHHH--CCCHHHHHHHHHHHHHCCCEEEe
Confidence 56776664322 235789999999 99999999999999999999764
No 309
>3c3w_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 2.20A {Mycobacterium tuberculosis}
Probab=72.28 E-value=8.5 Score=30.99 Aligned_cols=45 Identities=22% Similarity=0.412 Sum_probs=38.7
Q ss_pred CCCCChHHHHHHHHHHhhCCCcccHHHHHHHhhcCCChHHHHHHHHHHHhC
Q 026766 13 SDSLTDHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNK 63 (233)
Q Consensus 13 ~~~L~~~e~lVy~~I~~aG~~GIw~~dik~~t~~~l~~~~v~k~LK~Le~k 63 (233)
...||+-|..|+.++.+ |...++|..++ ++..++|...++.|-+|
T Consensus 147 ~~~LT~rE~~vL~~l~~----g~s~~eIa~~l--~is~~TV~~hi~~l~~K 191 (225)
T 3c3w_A 147 LSGLTDQERTLLGLLSE----GLTNKQIADRM--FLAEKTVKNYVSRLLAK 191 (225)
T ss_dssp TTTSCHHHHHHHHHHHT----TCCHHHHHHHH--TCCHHHHHHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHC----CCCHHHHHHHh--CCCHHHHHHHHHHHHHH
Confidence 45799999999999964 58999999999 99999988888877654
No 310
>3c7j_A Transcriptional regulator, GNTR family; structural genomics, PSI-2, protein structure initiative, midwest center for STR genomics; HET: MSE; 2.10A {Pseudomonas syringae PV}
Probab=72.19 E-value=4.2 Score=34.22 Aligned_cols=48 Identities=13% Similarity=0.296 Sum_probs=38.9
Q ss_pred HHHHHHHHhh-------CCCcccHHHHHHHhhcCCChHHHHHHHHHHHhCCCceeee
Q 026766 21 RLIYDVIRSK-------QDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVV 70 (233)
Q Consensus 21 ~lVy~~I~~a-------G~~GIw~~dik~~t~~~l~~~~v~k~LK~Le~k~lIK~vk 70 (233)
..||..|... -+.=+..++|..++ |...+.|+.+|+.|+..|||...+
T Consensus 29 ~~v~~~L~~~I~~g~l~pG~~L~e~~La~~l--gVSr~~VReAL~~L~~~Glv~~~~ 83 (237)
T 3c7j_A 29 TVIEEKLRNAIIDGSLPSGTALRQQELATLF--GVSRMPVREALRQLEAQSLLRVET 83 (237)
T ss_dssp HHHHHHHHHHHHTSSSCTTCBCCHHHHHHHH--TSCHHHHHHHHHHHHHTTSEEEET
T ss_pred HHHHHHHHHHHHhCCCCCcCeeCHHHHHHHH--CCCHHHHHHHHHHHHHCCCEEEeC
Confidence 3488877743 22336889999999 999999999999999999997653
No 311
>2x8x_X TLR1789 protein, OMP85; chaperone, TOC75, protein targeting; 1.97A {Thermosynechococcus elongatus}
Probab=72.10 E-value=12 Score=30.18 Aligned_cols=60 Identities=3% Similarity=-0.012 Sum_probs=39.5
Q ss_pred hCCCcccHHHHHHHhhc----CCChHHHHHHHHHHHhCCCceeee-cccCCCeeeEEeeccccCC
Q 026766 30 KQDMGIWTRDMKRELRV----NLPDNIVTKSIKSLQNKSLIKEVV-NIHSKGKKHLMAVEFEPSK 89 (233)
Q Consensus 30 aG~~GIw~~dik~~t~~----~l~~~~v~k~LK~Le~k~lIK~vk-sV~~~~rK~Yml~~lePs~ 89 (233)
.||+++....|+..++. .+.+..+...++.|.+.|+-..+. .......++.+.+.++|..
T Consensus 13 ~G~~~~~~~~i~~~l~~~~g~~~~~~~~~~~~~~L~~~Gyf~~~~v~~~~~~~~~~l~~~v~eg~ 77 (235)
T 2x8x_X 13 EGATPELEQLVYQVISTRPGSTTTRTQLQQDTNAIFATGFFADVNAVPRDTPLGVRITFVVRPYP 77 (235)
T ss_dssp ESCCHHHHHHHHHHCCCCTTCEECHHHHHHHHHHHHTTSCEEEEEEEEEEETTEEEEEEEEEECC
T ss_pred ECCCccCHHHHHHhhccCCCCccCHHHHHHHHHHHHHCCCcEEEEEEEecCCCcEEEEEEEEecc
Confidence 46777777777766511 367889999999999999832221 1111234577778888765
No 312
>1yio_A Response regulatory protein; transcription regulation, DNA binding protein; 2.20A {Pseudomonas fluorescens} SCOP: a.4.6.2 c.23.1.1 PDB: 1zn2_A
Probab=71.80 E-value=7.5 Score=30.46 Aligned_cols=44 Identities=20% Similarity=0.346 Sum_probs=36.0
Q ss_pred CCCChHHHHHHHHHHhhCCCcccHHHHHHHhhcCCChHHHHHHHHHHHhC
Q 026766 14 DSLTDHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNK 63 (233)
Q Consensus 14 ~~L~~~e~lVy~~I~~aG~~GIw~~dik~~t~~~l~~~~v~k~LK~Le~k 63 (233)
..||+-|+.|+.++. +|...++|...+ +++.++|...++.+-+|
T Consensus 141 ~~Lt~rE~~vl~~l~----~g~s~~~Ia~~l--~is~~TV~~~~~~i~~K 184 (208)
T 1yio_A 141 SSLTGREQQVLQLTI----RGLMNKQIAGEL--GIAEVTVKVHRHNIMQK 184 (208)
T ss_dssp HTSCHHHHHHHHHHT----TTCCHHHHHHHH--TCCHHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHH----cCCcHHHHHHHc--CCCHHHHHHHHHHHHHH
Confidence 359999999999983 468999999999 99999997666666543
No 313
>3i5g_B Myosin regulatory light chain LC-2, mantle muscle; rigor-like, squid, muscle myosin, contractIle protein; 2.60A {Todarodes pacificus} PDB: 3i5f_B 3i5h_B 3i5i_B
Probab=71.76 E-value=23 Score=27.07 Aligned_cols=112 Identities=14% Similarity=0.214 Sum_probs=64.3
Q ss_pred CCCCCCCChHHH----HHHHHHHhhCCCcccHHHHHHHhh---cCCChHHHHHHHHHHHhCCCceeeecccCCCeeeEEe
Q 026766 10 NAPSDSLTDHER----LIYDVIRSKQDMGIWTRDMKRELR---VNLPDNIVTKSIKSLQNKSLIKEVVNIHSKGKKHLMA 82 (233)
Q Consensus 10 ~~~~~~L~~~e~----lVy~~I~~aG~~GIw~~dik~~t~---~~l~~~~v~k~LK~Le~k~lIK~vksV~~~~rK~Yml 82 (233)
+.+...||++|. .+++++...|+--|...+|+.-++ .+++...+...+...
T Consensus 4 ~~~~~~Lt~~qi~elk~~F~~~D~d~dG~I~~~El~~~l~~lg~~~~~~~~~~~~~~~---------------------- 61 (153)
T 3i5g_B 4 APRRVKLSQRQMQELKEAFTMIDQDRDGFIGMEDLKDMFSSLGRVPPDDELNAMLKEC---------------------- 61 (153)
T ss_dssp ---CTTCCHHHHHHHHHHHHHHCCSTTSCCCHHHHHHHHHHTTSCCCHHHHHHHHHTS----------------------
T ss_pred cccccCCCHHHHHHHHHHHHHHCCCCCCeEcHHHHHHHHHHcCCCccHHHHHHHHHhc----------------------
Confidence 344567998764 467778777777789999887652 345555555444210
Q ss_pred eccccCCCcccCCccc---C--CCCCHHHHHHHHHHHHHHh--hhCCCCCHHHHHHHHHHhCCcccccCHHHHHHHHHH
Q 026766 83 VEFEPSKEISGGAWYS---E--GSLDTEFIKVVKSQCLKQI--IKLKVATLEGISDSIKRSGAFKVDLTKQQIEEIVRA 154 (233)
Q Consensus 83 ~~lePs~eiTGG~wy~---d--~e~D~efI~~l~~~~~~~i--~~~~~~T~~~I~~~I~~~~i~~~~Ls~~di~~il~~ 154 (233)
+..|+.-.|.. . ...|. -+.|+++ ++.+ ...|+.|.+++...+...|. .||.++|+.+++.
T Consensus 62 -----~~~i~f~ef~~~~~~~~~~~~~--~~~l~~a-F~~fD~d~~G~I~~~el~~~l~~~g~---~ls~~ei~~~~~~ 129 (153)
T 3i5g_B 62 -----PGQLNFTAFLTLFGEKVSGTDP--EDALRNA-FSMFDEDGQGFIPEDYLKDLLENMGD---NFSKEEIKNVWKD 129 (153)
T ss_dssp -----SSCCCSHHHHHTTTTTTTTCCC--HHHHHHH-HHTTCSSCSSCCCHHHHHHHHHSSSS---CCCHHHHHHHHTT
T ss_pred -----cCCccHHHHHHHHHhhhccccc--HHHHHHH-HhccccCCCCeEeHHHHHHHHHHcCC---cCCHHHHHHHHHH
Confidence 00111111100 0 00011 1233332 3333 24689999999999998884 6999999999874
No 314
>1xb4_A VPS25, hypothetical 23.6 kDa protein in YUH1-URA8 intergenic region; winged helix, unknown function; 3.10A {Saccharomyces cerevisiae} SCOP: a.4.5.54 a.4.5.54 PDB: 1w7p_B 1u5t_C
Probab=71.09 E-value=6.4 Score=33.32 Aligned_cols=65 Identities=11% Similarity=0.139 Sum_probs=46.4
Q ss_pred ChHHHHHHHHHHhhCCCc--ccHHHHHHHh---hc---CCChHHHHHHHHHHHhCCCceeeecccCCCeeeEE
Q 026766 17 TDHERLIYDVIRSKQDMG--IWTRDMKREL---RV---NLPDNIVTKSIKSLQNKSLIKEVVNIHSKGKKHLM 81 (233)
Q Consensus 17 ~~~e~lVy~~I~~aG~~G--Iw~~dik~~t---~~---~l~~~~v~k~LK~Le~k~lIK~vksV~~~~rK~Ym 81 (233)
.+=..+||+.+++.|..| ++.-+|..-- +. ||+...+.|+|+.|+++|-..-++.=.+.+-|.++
T Consensus 129 ~EWa~~I~~Wv~~tG~~~sV~TlyEL~~Gd~t~~~ef~gmd~~vL~kaL~~L~k~GKaqi~~~~~~~GVKF~~ 201 (202)
T 1xb4_A 129 DSWASLILQWFEDSGKLNQVITLYELSEGDETVNWEFHRMPESLLYYCLKPLCDRNRATMLKDENDKVIAIKV 201 (202)
T ss_dssp HHHHHHHHHHHHTTSCTTSCEEHHHHC--CCSCCSTTTTCCHHHHHHHHHHHHGGGCCEEEECTTSCEEEEEC
T ss_pred HHHHHHHHHHHHhcCCcCcEEEeehcccCCCCCCccccCCCHHHHHHHHHHHHHcCCEEEeecCCCCeEEEEe
Confidence 344679999999999765 4555776641 11 79999999999999999987776654444555543
No 315
>2vz4_A Tipal, HTH-type transcriptional activator TIPA; transcription, resistance, antibiotic; 2.90A {Streptomyces lividans}
Probab=71.06 E-value=21 Score=26.21 Aligned_cols=71 Identities=7% Similarity=0.062 Sum_probs=46.4
Q ss_pred cccHHHHHHHhhcCCChHHHHHHHHHHHhCCCceeeecccCCCeeeEEeeccccCCCcccCCcccCCCCCHHHHHHHHHH
Q 026766 34 GIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVVNIHSKGKKHLMAVEFEPSKEISGGAWYSEGSLDTEFIKVVKSQ 113 (233)
Q Consensus 34 GIw~~dik~~t~~~l~~~~v~k~LK~Le~k~lIK~vksV~~~~rK~Yml~~lePs~eiTGG~wy~d~e~D~efI~~l~~~ 113 (233)
++.+.++.+.+ |++.++|.. -|+.|||++...-. .+.+. |+.+-|+.|+.+
T Consensus 1 ~~~i~e~A~~~--gvs~~tLR~----ye~~Gll~p~~r~~-~g~R~----------------------Y~~~dl~~l~~I 51 (108)
T 2vz4_A 1 SYSVGQVAGFA--GVTVRTLHH----YDDIGLLVPSERSH-AGHRR----------------------YSDADLDRLQQI 51 (108)
T ss_dssp CBCHHHHHHHH--TCCHHHHHH----HHHHTSSCCSEECS-SCCEE----------------------BCHHHHHHHHHH
T ss_pred CCCHHHHHHHH--CcCHHHHHH----HHHCCCCCCCccCC-CCCee----------------------cCHHHHHHHHHH
Confidence 36788999999 999988765 57789996644111 23333 345555666544
Q ss_pred HHHHhhhCCCCCHHHHHHHHHHh
Q 026766 114 CLKQIIKLKVATLEGISDSIKRS 136 (233)
Q Consensus 114 ~~~~i~~~~~~T~~~I~~~I~~~ 136 (233)
. +++.. ..|+++|.+++...
T Consensus 52 ~--~lr~~-G~sl~~I~~~l~~~ 71 (108)
T 2vz4_A 52 L--FYREL-GFPLDEVAALLDDP 71 (108)
T ss_dssp H--HHHHT-TCCHHHHHHHHTC-
T ss_pred H--HHHHC-CCCHHHHHHHHhCC
Confidence 3 34455 46799999999743
No 316
>3clo_A Transcriptional regulator; NP_811094.1, bacterial regulatory proteins, LUXR family, structural genomics; 2.04A {Bacteroides thetaiotaomicron vpi-5482}
Probab=71.05 E-value=7.4 Score=32.80 Aligned_cols=42 Identities=19% Similarity=0.407 Sum_probs=35.1
Q ss_pred CCCCChHHHHHHHHHHhhCCCcccHHHHHHHhhcCCChHHHHHHHHHH
Q 026766 13 SDSLTDHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSL 60 (233)
Q Consensus 13 ~~~L~~~e~lVy~~I~~aG~~GIw~~dik~~t~~~l~~~~v~k~LK~L 60 (233)
+..||+.|+.|+.+. . +|...++|...+ +++.++|...+...
T Consensus 195 ~~~L~~~erevl~L~--~--~G~s~~EIA~~L--~iS~~TVk~~l~ra 236 (258)
T 3clo_A 195 RNILSEREKEILRCI--R--KGLSSKEIAATL--YISVNTVNRHRQNI 236 (258)
T ss_dssp TTSSCHHHHHHHHHH--H--TTCCHHHHHHHH--TCCHHHHHHHHHHH
T ss_pred HccCCHHHHHHHHHH--H--cCCCHHHHHHHH--CcCHHHHHHHHHHH
Confidence 568999999999885 3 789999999999 99998877655443
No 317
>2l02_A Uncharacterized protein; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Bacteroides thetaiotaomicron}
Probab=70.84 E-value=19 Score=26.30 Aligned_cols=54 Identities=11% Similarity=0.151 Sum_probs=44.8
Q ss_pred HHHHHHHHHhhCCCcccHHHHHHHhhcCCChHHHHHHHHHHHhCCCceeeecccCCCeeeEE
Q 026766 20 ERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVVNIHSKGKKHLM 81 (233)
Q Consensus 20 e~lVy~~I~~aG~~GIw~~dik~~t~~~l~~~~v~k~LK~Le~k~lIK~vksV~~~~rK~Ym 81 (233)
.-.||+++.+.| .+..++|++++ +|++..+.-+|==|-..+-|.-.+. ++.+|+
T Consensus 10 AG~VW~~L~~~~--~~s~~el~k~t--~l~d~el~lAIGWLaREdKI~~~~~----~~~l~v 63 (82)
T 2l02_A 10 AGKVWHALNEAD--GISIPELARKV--NLSVESTALAVGWLARENKVVIERK----NGLIEI 63 (82)
T ss_dssp HHHHHHHHHHCC--SBCHHHHHHHH--TCCHHHHHHHHHHHHTTTSEEEEEE----TTEEEE
T ss_pred HHHHHHHHhccC--CCCHHHHHHHh--CCCHHHHHHHHHHHhccCceeEEee----CCEEEE
Confidence 347999999976 69999999999 9999999999999999888866552 445553
No 318
>4fp5_D LT-IIB, heat-labIle enterotoxin IIB, B chain; B pentamer LT-IIB S74A mutant; 1.40A {Escherichia coli} PDB: 1qb5_D 1qcb_D 1tii_D 4fnf_D 4fo2_D
Probab=70.06 E-value=2.9 Score=30.76 Aligned_cols=36 Identities=17% Similarity=0.380 Sum_probs=26.7
Q ss_pred CceeeecccCCCeeeEEeeccccCCCcccCCcccCC--CCCHHHH
Q 026766 65 LIKEVVNIHSKGKKHLMAVEFEPSKEISGGAWYSEG--SLDTEFI 107 (233)
Q Consensus 65 lIK~vksV~~~~rK~Yml~~lePs~eiTGG~wy~d~--e~D~efI 107 (233)
|-|-+..|++.++-+|...+ |||.||-.+ ++-..|.
T Consensus 23 l~kyi~din~nt~g~yvvs~-------tggvw~i~~~~dypdn~~ 60 (98)
T 4fp5_D 23 LTKYISDINNNTDGMYVVSS-------TGGVWRISRAKDYPDNVM 60 (98)
T ss_dssp EEEEEEECSTTTCEEEEEET-------TCCEEEECCCSSTTHHHH
T ss_pred hhhhhhhccCCCccEEEEec-------CCcEEEecCCCCCChhhh
Confidence 44566789999999998754 999999744 5555554
No 319
>3fwb_A Cell division control protein 31; gene gating, complex, cell cycle, cell division, mitosis, MR transport, nuclear pore complex, nucleus, phosphoprotein; 2.50A {Saccharomyces cerevisiae} SCOP: a.39.1.5 PDB: 2gv5_A 2doq_A 3fwc_A
Probab=70.06 E-value=29 Score=25.32 Aligned_cols=121 Identities=15% Similarity=0.262 Sum_probs=71.7
Q ss_pred CCCC-CCCCCCCCCCCCChHHHHH----HHHHHhhCCCcccHHHHHHHh---hcCCChHHHHHHHHHHHhCCCceeeecc
Q 026766 1 MSKR-KRPDSNAPSDSLTDHERLI----YDVIRSKQDMGIWTRDMKREL---RVNLPDNIVTKSIKSLQNKSLIKEVVNI 72 (233)
Q Consensus 1 ~~~~-~~~~~~~~~~~L~~~e~lV----y~~I~~aG~~GIw~~dik~~t---~~~l~~~~v~k~LK~Le~k~lIK~vksV 72 (233)
||.+ +..........|++++..- +..++..|+--|...+++.-+ +.+++...+...++.+-..+
T Consensus 1 M~~~~~~~~~~~~~~~l~~~~~~~l~~~F~~~D~~~~G~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~-------- 72 (161)
T 3fwb_A 1 MSKNRSSLQSGPLNSELLEEQKQEIYEAFSLFDMNNDGFLDYHELKVAMKALGFELPKREILDLIDEYDSEG-------- 72 (161)
T ss_dssp --------CTTTTTTTSCHHHHHHHHHHHHHHCTTSSSEECHHHHHHHHHHTTCCCCHHHHHHHHHHHCTTS--------
T ss_pred CCCCccccccCCCCCCCCHHHHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHcCCCCCHHHHHHHHHHhCcCC--------
Confidence 4433 3333444566788865543 344445666668888887765 23567777777777653211
Q ss_pred cCCCeeeEEeeccccCCCcccCCcccCCCCC-HHHHHHHHHH------------HHHHhh--hCCCCCHHHHHHHHHHhC
Q 026766 73 HSKGKKHLMAVEFEPSKEISGGAWYSEGSLD-TEFIKVVKSQ------------CLKQII--KLKVATLEGISDSIKRSG 137 (233)
Q Consensus 73 ~~~~rK~Yml~~lePs~eiTGG~wy~d~e~D-~efI~~l~~~------------~~~~i~--~~~~~T~~~I~~~I~~~~ 137 (233)
+|.++ .||+..+... +++.+. ..+++|.+|+.++++..|
T Consensus 73 --------------------------~g~i~~~eF~~~~~~~~~~~~~~~~~~~~F~~~D~d~~G~i~~~el~~~l~~~~ 126 (161)
T 3fwb_A 73 --------------------------RHLMKYDDFYIVMGEKILKRDPLDEIKRAFQLFDDDHTGKISIKNLRRVAKELG 126 (161)
T ss_dssp --------------------------SSCEEHHHHHHHHHHHHHTCCHHHHHHHHHHHHCTTCSSEECHHHHHHHHHHTT
T ss_pred --------------------------CCeEeHHHHHHHHHHHHhcCCcHHHHHHHHHHHcCCCCCeEeHHHHHHHHHHhC
Confidence 12222 2444444322 222222 357899999999999888
Q ss_pred CcccccCHHHHHHHHHHHhcC
Q 026766 138 AFKVDLTKQQIEEIVRALVLD 158 (233)
Q Consensus 138 i~~~~Ls~~di~~il~~Lv~D 158 (233)
. .++.++++.+++.+-.|
T Consensus 127 ~---~~~~~~~~~~~~~~d~~ 144 (161)
T 3fwb_A 127 E---TLTDEELRAMIEEFDLD 144 (161)
T ss_dssp C---CCCHHHHHHHHHTTCSS
T ss_pred C---CCCHHHHHHHHHHhCCC
Confidence 4 69999999999877543
No 320
>1qb5_D Protein (heat labIle enterotoxin type IIB B- pentamer); 1.90A {Escherichia coli} SCOP: b.40.2.1 PDB: 1qcb_D 1tii_D
Probab=70.03 E-value=3.1 Score=30.66 Aligned_cols=37 Identities=16% Similarity=0.372 Sum_probs=27.5
Q ss_pred CCceeeecccCCCeeeEEeeccccCCCcccCCcccCC--CCCHHHH
Q 026766 64 SLIKEVVNIHSKGKKHLMAVEFEPSKEISGGAWYSEG--SLDTEFI 107 (233)
Q Consensus 64 ~lIK~vksV~~~~rK~Yml~~lePs~eiTGG~wy~d~--e~D~efI 107 (233)
.|-|-+..|++.++-+|...+ |||.||-.+ ++-..|.
T Consensus 22 ~l~kyi~din~nt~g~yvvs~-------tggvw~i~~~~dypdn~~ 60 (99)
T 1qb5_D 22 ELTKYISDINNNTDGMYVVSS-------TGGVWRISRAKDYPDNVM 60 (99)
T ss_dssp CEEEEEEECSTTTCEEEEEET-------TSCEEEECCCSSTTHHHH
T ss_pred hhhhhhhhccCCCccEEEEec-------CCcEEEecCCCCCChhhh
Confidence 455666889999999998754 999999744 5555554
No 321
>3r0j_A Possible two component system response transcript positive regulator PHOP; beta-alpha fold, winged helix-turn-helix; 2.50A {Mycobacterium tuberculosis}
Probab=70.01 E-value=13 Score=30.30 Aligned_cols=48 Identities=15% Similarity=0.101 Sum_probs=38.7
Q ss_pred CCChHHHHHHHHHHhhCCCcccHHHHHHHh-hc--CCChHHHHHHHHHHHh
Q 026766 15 SLTDHERLIYDVIRSKQDMGIWTRDMKREL-RV--NLPDNIVTKSIKSLQN 62 (233)
Q Consensus 15 ~L~~~e~lVy~~I~~aG~~GIw~~dik~~t-~~--~l~~~~v~k~LK~Le~ 62 (233)
.||+-|..|+.++-...++++..++|..++ +. +...++|...++.|-+
T Consensus 176 ~LT~rE~~iL~~l~~~~~~~~s~~~i~~~lw~~~~~~~~~tv~~~i~~lr~ 226 (250)
T 3r0j_A 176 SLSPTEFTLLRYFVINAGTVLSKPKILDHVWRYDFGGDVNVVESYVSYLRR 226 (250)
T ss_dssp CCCHHHHHHHHHHHHTTTCCBCHHHHHHHHTTTSCCSCTHHHHHHHHHHHH
T ss_pred ecCHHHHHHHHHHHHCCCceEcHHHHHHHHcCCCCCCCccCHHHHHHHHHH
Confidence 699999999999999999999999999987 21 4577777666655543
No 322
>2esn_A Probable transcriptional regulator; PA0477, APC5828,transcription, PSI, protein struc initiative, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: a.4.5.37 c.94.1.1
Probab=69.86 E-value=10 Score=31.32 Aligned_cols=50 Identities=16% Similarity=0.278 Sum_probs=40.1
Q ss_pred CCCCChHHHHHHHHHHhhCCCcccHHHHHHHhhcCCChHHHHHHHHHHHh---CCCcee
Q 026766 13 SDSLTDHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQN---KSLIKE 68 (233)
Q Consensus 13 ~~~L~~~e~lVy~~I~~aG~~GIw~~dik~~t~~~l~~~~v~k~LK~Le~---k~lIK~ 68 (233)
+..|+-.+-.++..+.+.|+ +..+ .+++ +++|..|++.||+||+ -.|..+
T Consensus 7 ~~~m~l~~L~~f~~v~~~gs--~s~A--A~~L--~isq~avS~~I~~LE~~lg~~Lf~R 59 (310)
T 2esn_A 7 LRRLDLNLLLVFDALYRHRN--VGTA--ASEL--AISASAFSHALGRLRQGLDDELFLR 59 (310)
T ss_dssp TTTSCTTHHHHHHHHHHHSS--HHHH--HHHH--TCCHHHHHHHHHHHHHHHTSCCEEE
T ss_pred hhhcCHHHHHHHHHHHHcCC--HHHH--HHHh--CCChHHHHHHHHHHHHhhCCcceee
Confidence 45677788888889999988 4443 5778 9999999999999997 467755
No 323
>3p9c_A Caffeic acid O-methyltransferase; S-adenosylmethionine dependent O-methyltransferase; HET: SAH; 1.80A {Lolium perenne} PDB: 3p9i_A* 3p9k_A*
Probab=69.67 E-value=12 Score=33.27 Aligned_cols=49 Identities=10% Similarity=0.207 Sum_probs=42.2
Q ss_pred HHHHHHHHHhhCCCcccHHHHHHHhhcCC--ChH---HHHHHHHHHHhCCCceeee
Q 026766 20 ERLIYDVIRSKQDMGIWTRDMKRELRVNL--PDN---IVTKSIKSLQNKSLIKEVV 70 (233)
Q Consensus 20 e~lVy~~I~~aG~~GIw~~dik~~t~~~l--~~~---~v~k~LK~Le~k~lIK~vk 70 (233)
+.-|+.+|.++|+..+...+|..++ ++ +++ .+.|.|+.|...|++.+..
T Consensus 42 ~Lgifd~L~~~g~~~~t~~eLA~~~--g~~~~~~~~~~l~rlLr~L~~~g~l~~~~ 95 (364)
T 3p9c_A 42 ELGLLEILVAAGGKSLTPTEVAAKL--PSAANPEAPDMVDRILRLLASYNVVTCLV 95 (364)
T ss_dssp HHTHHHHHHHTTTCCBCHHHHHHTT--TCTTCTTHHHHHHHHHHHHHHTTSEEEEE
T ss_pred HCChHHHHhhcCCCCCCHHHHHHhc--CCCCCccchhhHHHHHHHHHhCCCEEEec
Confidence 4457888988876679999999999 97 766 8999999999999998864
No 324
>1sfx_A Conserved hypothetical protein AF2008; structural genomics, HTH MOT protein structure initiative, midwest center for structural genomics; 1.55A {Archaeoglobus fulgidus} SCOP: a.4.5.50
Probab=69.27 E-value=13 Score=25.83 Aligned_cols=48 Identities=8% Similarity=0.153 Sum_probs=39.1
Q ss_pred HHHHHHHhhhCCCCCHHHHHHHHHHhCCcccccCHHHHHHHHHHHhcCCeEEEEee
Q 026766 111 KSQCLKQIIKLKVATLEGISDSIKRSGAFKVDLTKQQIEEIVRALVLDNQIMEVKS 166 (233)
Q Consensus 111 ~~~~~~~i~~~~~~T~~~I~~~I~~~~i~~~~Ls~~di~~il~~Lv~Dg~ie~v~~ 166 (233)
+..++.+|...+..|..+|++.+ .++..-|..+|+.|+-.|.|+....
T Consensus 22 ~~~il~~l~~~~~~s~~ela~~l--------~is~~tv~~~l~~L~~~glv~~~~~ 69 (109)
T 1sfx_A 22 DVRIYSLLLERGGMRVSEIAREL--------DLSARFVRDRLKVLLKRGFVRREIV 69 (109)
T ss_dssp HHHHHHHHHHHCCBCHHHHHHHH--------TCCHHHHHHHHHHHHHTTSEEEEEE
T ss_pred HHHHHHHHHHcCCCCHHHHHHHH--------CCCHHHHHHHHHHHHHCCCEEEEee
Confidence 44566777666778899998877 3788999999999999999998754
No 325
>1iuf_A Centromere ABP1 protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Schizosaccharomyces pombe} SCOP: a.4.1.7 a.4.1.7
Probab=69.00 E-value=5.7 Score=30.94 Aligned_cols=52 Identities=19% Similarity=0.215 Sum_probs=36.5
Q ss_pred CCCCCCCCCCCCCCCCChHHHHHHHHHHhh--CCCcccHHHHHH----HhhcCCChHHHHHHHHHHH
Q 026766 1 MSKRKRPDSNAPSDSLTDHERLIYDVIRSK--QDMGIWTRDMKR----ELRVNLPDNIVTKSIKSLQ 61 (233)
Q Consensus 1 ~~~~~~~~~~~~~~~L~~~e~lVy~~I~~a--G~~GIw~~dik~----~t~~~l~~~~v~k~LK~Le 61 (233)
|++|+|. .||.+|++- +|+.+ -+-++.+++|.+ +-+.+++..+|+++||.=+
T Consensus 4 m~~~~R~-------~lT~~qK~~--i~~~~~~~~~~~~q~~la~wa~~~f~~~is~stis~ilk~k~ 61 (144)
T 1iuf_A 4 MGKIKRR-------AITEHEKRA--LRHYFFQLQNRSGQQDLIEWFREKFGKDISQPSVSQILSSKY 61 (144)
T ss_dssp CCCCSSS-------CCCSHHHHH--HHHHHHSSSSCCCHHHHHHHHHHHHSSCCSSSSTTHHHHHHH
T ss_pred CCCCcCc-------cCCHHHHHH--HHHHHHHhCCCCCHHHHHHHHHHHHCCCCcHHHHHHHHhhHH
Confidence 6665554 488888753 34444 456689999988 6533678889999999844
No 326
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=68.92 E-value=11 Score=32.25 Aligned_cols=55 Identities=11% Similarity=0.146 Sum_probs=44.9
Q ss_pred CCCChHHHHHHHHHHhhCCCcccHHHHHHHhhcCCChHHHHHHHH-HHHhCCCceeee
Q 026766 14 DSLTDHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIK-SLQNKSLIKEVV 70 (233)
Q Consensus 14 ~~L~~~e~lVy~~I~~aG~~GIw~~dik~~t~~~l~~~~v~k~LK-~Le~k~lIK~vk 70 (233)
..++..|+.+...+...+...+...++.+.+ +++.+++.+.|+ .|.+.|+|....
T Consensus 259 ~~l~~~e~~~l~~l~~~~~~~~~~~~~a~~l--g~~~~tl~~~l~~~l~~~gli~~~~ 314 (338)
T 3pfi_A 259 LGFDAMDLRYLELLTAAKQKPIGLASIAAAL--SEDENTIEDVIEPYLLANGYIERTA 314 (338)
T ss_dssp TCCCHHHHHHHHHHHHSCSCCBCHHHHHHHT--TCCHHHHHHTTHHHHHHTTSEEEET
T ss_pred cCCCHHHHHHHHHHHHhcCCCchHHHHHHHh--CCCHHHHHHHHhHHHHHcCceecCC
Confidence 4577766666666665577778899999999 999999999999 999999997653
No 327
>2hqr_A Putative transcriptional regulator; phosporylation-independent response regulator, H. pylori, SY dimer, signaling protein; NMR {Helicobacter pylori}
Probab=68.55 E-value=3.6 Score=32.81 Aligned_cols=46 Identities=7% Similarity=0.135 Sum_probs=38.3
Q ss_pred CCCChHHHHHHHHHHhhCCCcccHHHHHHHhhcC-----CChHHHHHHHHHHH
Q 026766 14 DSLTDHERLIYDVIRSKQDMGIWTRDMKRELRVN-----LPDNIVTKSIKSLQ 61 (233)
Q Consensus 14 ~~L~~~e~lVy~~I~~aG~~GIw~~dik~~t~~~-----l~~~~v~k~LK~Le 61 (233)
..||+-|..|+.++.+..++-+..++|..++ . +..++|...++.|-
T Consensus 142 ~~Lt~rE~~vL~~l~~~~~~~~s~~~Ia~~l--~~~~~~~s~~tv~~~i~~lr 192 (223)
T 2hqr_A 142 VEVKGKPFEVLTHLARHRDQIVSKEQLLDAI--WEEPEMVTPNVIEVAINQIR 192 (223)
T ss_dssp ECCCSTTTHHHHHHHHTCSEEEEHHHHHHHH--CCSSCSCGGGTHHHHHHHHH
T ss_pred EecCHHHHHHHHHHHhCCCCcCCHHHHHHHh--cCCccCCCCcCHHHHHHHHH
Confidence 3599999999999998888889999999999 7 88887766555544
No 328
>1h8b_A ACT-EF34, alpha-actinin 2, skeletal muscle isoform; structural protein, Z-DISK structural complex; NMR {Homo sapiens} SCOP: a.39.1.7
Probab=68.36 E-value=7.7 Score=27.23 Aligned_cols=42 Identities=10% Similarity=0.046 Sum_probs=33.8
Q ss_pred HHHHHHHHHHhhhCCCCCHHHHHHHHHHhCCcccccCHHHHHHHHHHHh-cCC
Q 026766 108 KVVKSQCLKQIIKLKVATLEGISDSIKRSGAFKVDLTKQQIEEIVRALV-LDN 159 (233)
Q Consensus 108 ~~l~~~~~~~i~~~~~~T~~~I~~~I~~~~i~~~~Ls~~di~~il~~Lv-~Dg 159 (233)
+.|+++..-|-...+|+|.+++.. .||.++|+.+++.+- +||
T Consensus 10 eel~eAFr~f~dg~G~It~~eLr~----------~lt~eevd~~i~~~d~~dg 52 (75)
T 1h8b_A 10 EQVIASFRILASDKPYILAEELRR----------ELPPDQAQYCIKRMPAYSG 52 (75)
T ss_dssp HHHHHHHHHHTTSCSSBCHHHHHH----------HSCHHHHHHHHHHSCSCCC
T ss_pred HHHHHHHHHHhcCCCCcCHHHHHh----------cCCHHHHHHHHHhcCcccC
Confidence 566666666633578999999998 499999999999987 664
No 329
>3gpv_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.90A {Bacillus thuringiensis serovarkonkukian}
Probab=68.33 E-value=40 Score=26.27 Aligned_cols=70 Identities=11% Similarity=0.080 Sum_probs=47.3
Q ss_pred cccHHHHHHHhhcCCChHHHHHHHHHHHhCCCceeeecccCCCeeeEEeeccccCCCcccCCcccCCCCCHHHHHHHHHH
Q 026766 34 GIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVVNIHSKGKKHLMAVEFEPSKEISGGAWYSEGSLDTEFIKVVKSQ 113 (233)
Q Consensus 34 GIw~~dik~~t~~~l~~~~v~k~LK~Le~k~lIK~vksV~~~~rK~Yml~~lePs~eiTGG~wy~d~e~D~efI~~l~~~ 113 (233)
-+.++++.+.+ |++.++|+ .-|+.|||.+...-. .+.+.| +.+=|+.|+.+
T Consensus 16 ~~~I~evA~~~--gvs~~tLR----~Ye~~Gll~p~~r~~-~g~R~Y----------------------~~~dl~~l~~I 66 (148)
T 3gpv_A 16 YYTIGQVAKMQ--HLTISQIR----YYDKQGLFPFLQRNE-KGDRIF----------------------NEEALKYLEMI 66 (148)
T ss_dssp CBCHHHHHHHT--TCCHHHHH----HHHHTTCCTTCEECT-TCCEEB----------------------CHHHHHHHHHH
T ss_pred ceeHHHHHHHH--CcCHHHHH----HHHHCCCCCCCcCCC-CCCeec----------------------CHHHHHHHHHH
Confidence 47899999999 99998876 569999996433222 344444 44555555543
Q ss_pred HHHHhhhCCCCCHHHHHHHHHH
Q 026766 114 CLKQIIKLKVATLEGISDSIKR 135 (233)
Q Consensus 114 ~~~~i~~~~~~T~~~I~~~I~~ 135 (233)
.+++.. ..|+++|.+++..
T Consensus 67 --~~lr~~-G~sL~eIk~~l~~ 85 (148)
T 3gpv_A 67 --LCLKNT-GMPIQKIKQFIDW 85 (148)
T ss_dssp --HHHHTT-TCCHHHHHHHHHH
T ss_pred --HHHHHc-CCCHHHHHHHHHh
Confidence 334444 5679999999983
No 330
>3iwf_A Transcription regulator RPIR family; transcriptional, N-terminal, PSI, MCSG, structural genomics, midwest center structural genomics; 1.40A {Staphylococcus epidermidis}
Probab=68.08 E-value=6.3 Score=29.59 Aligned_cols=50 Identities=12% Similarity=0.191 Sum_probs=42.6
Q ss_pred CCCCChHHHHHHHHHHhhCC--CcccHHHHHHHhhcCCChHHHHHHHHHHHhCC
Q 026766 13 SDSLTDHERLIYDVIRSKQD--MGIWTRDMKRELRVNLPDNIVTKSIKSLQNKS 64 (233)
Q Consensus 13 ~~~L~~~e~lVy~~I~~aG~--~GIw~~dik~~t~~~l~~~~v~k~LK~Le~k~ 64 (233)
..+||+.|+.|.++|.+... .-+..++|.+++ +..+.+|.|-.|+|-=+|
T Consensus 12 ~~~lt~~e~~ia~yil~~~~~~~~~si~elA~~~--~vS~aTv~Rf~kkLGf~g 63 (107)
T 3iwf_A 12 YPYFTKNEKKIAQFILNYPHKVVNMTSQEIANQL--ETSSTSIIRLSKKVTPGG 63 (107)
T ss_dssp GGGSCHHHHHHHHHHHHCHHHHTTCCHHHHHHHH--TSCHHHHHHHHHHHSTTH
T ss_pred HHhcCHHHHHHHHHHHhCHHHHHHCCHHHHHHHH--CCCHHHHHHHHHHhCCCC
Confidence 35799999999999987654 358999999999 999999999999986444
No 331
>2xvc_A ESCRT-III, SSO0910; cell cycle, cell division, cytokinesis, winged-helix; 2.15A {Sulfolobus solfataricus}
Probab=67.91 E-value=7.1 Score=26.89 Aligned_cols=41 Identities=22% Similarity=0.272 Sum_probs=33.7
Q ss_pred CCCCCHHHHHHHHHHhC-Ccc-------cccCHHHHHHHHHHHhcCCeE
Q 026766 121 LKVATLEGISDSIKRSG-AFK-------VDLTKQQIEEIVRALVLDNQI 161 (233)
Q Consensus 121 ~~~~T~~~I~~~I~~~~-i~~-------~~Ls~~di~~il~~Lv~Dg~i 161 (233)
+...|-+++.+||+++| |.. -..+.++|..+|+.|.--|.|
T Consensus 7 ~~~~~e~~lL~yIr~sGGildI~~~a~kygV~kdeV~~~LrrLe~KGLI 55 (59)
T 2xvc_A 7 HHMITERELLDYIVNNGGFLDIEHFSKVYGVEKQEVVKLLEALKNKGLI 55 (59)
T ss_dssp SCCCCHHHHHHHHHHTTSEEEHHHHHHHHCCCHHHHHHHHHHHHHTTSE
T ss_pred hhhccHHHHHHHHHHcCCEEeHHHHHHHhCCCHHHHHHHHHHHHHCCCe
Confidence 35688999999999987 222 358999999999999988877
No 332
>1q06_A Transcriptional regulator CUER; MERR family transcriptional regulator, copper efflux regulator; 2.07A {Escherichia coli} SCOP: a.6.1.3 PDB: 1q05_A 1q07_A
Probab=67.90 E-value=39 Score=25.91 Aligned_cols=68 Identities=12% Similarity=0.146 Sum_probs=44.3
Q ss_pred cHHHHHHHhhcCCChHHHHHHHHHHHhCCCceeeecccCCCeeeEEeeccccCCCcccCCcccCCCCCHHHHHHHHHHHH
Q 026766 36 WTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVVNIHSKGKKHLMAVEFEPSKEISGGAWYSEGSLDTEFIKVVKSQCL 115 (233)
Q Consensus 36 w~~dik~~t~~~l~~~~v~k~LK~Le~k~lIK~vksV~~~~rK~Yml~~lePs~eiTGG~wy~d~e~D~efI~~l~~~~~ 115 (233)
.+.++.+.+ |++.++|+ .-|+.|||++...-. .+.+.| +.+-|+.|+.+.
T Consensus 2 ~I~e~A~~~--gvs~~tLR----~ye~~Gll~p~~r~~-~g~R~Y----------------------~~~dl~~l~~I~- 51 (135)
T 1q06_A 2 NISDVAKIT--GLTSKAIR----FYEEKGLVTPPMRSE-NGYRTY----------------------TQQHLNELTLLR- 51 (135)
T ss_dssp CHHHHHHHH--TCCHHHHH----HHHHTTCSCCCEECT-TSCEEC----------------------CHHHHHHHHHHH-
T ss_pred CHHHHHHHH--CcCHHHHH----HHHHCCCCCCCccCC-CCCeee----------------------CHHHHHHHHHHH-
Confidence 567889999 99988876 468899997642212 233333 445555555433
Q ss_pred HHhhhCCCCCHHHHHHHHHH
Q 026766 116 KQIIKLKVATLEGISDSIKR 135 (233)
Q Consensus 116 ~~i~~~~~~T~~~I~~~I~~ 135 (233)
+++.. ..|+++|.+++..
T Consensus 52 -~lr~~-G~sl~eI~~~l~~ 69 (135)
T 1q06_A 52 -QARQV-GFNLEESGELVNL 69 (135)
T ss_dssp -HHHHT-TCCHHHHHHHHHH
T ss_pred -HHHHC-CCCHHHHHHHHHh
Confidence 34455 4679999999974
No 333
>3ic7_A Putative transcriptional regulator; helix-turn-helix, structural genomics, PSI-2, protein struct initiative; 2.82A {Bacteroides thetaiotaomicron}
Probab=67.87 E-value=1.1 Score=34.34 Aligned_cols=32 Identities=22% Similarity=0.268 Sum_probs=28.4
Q ss_pred cHHHHHHHhhcCCChHHHHHHHHHHHhCCCceee
Q 026766 36 WTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEV 69 (233)
Q Consensus 36 w~~dik~~t~~~l~~~~v~k~LK~Le~k~lIK~v 69 (233)
..++|..+. +++.++|+++|+.|++.|+|...
T Consensus 37 s~~~La~~~--~vSr~tvr~Al~~L~~~G~i~~~ 68 (126)
T 3ic7_A 37 SVREYASIV--EVNANTVMRSYEYLQSQEVIYNK 68 (126)
T ss_dssp CTTTTTTCC---CCSGGGHHHHHHHHTTTSEEEE
T ss_pred CHHHHHHHH--CcCHHHHHHHHHHHHHCCcEEEE
Confidence 577899999 99999999999999999999764
No 334
>3ke2_A Uncharacterized protein YP_928783.1; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 2.50A {Shewanella amazonensis SB2B}
Probab=67.23 E-value=18 Score=28.19 Aligned_cols=82 Identities=10% Similarity=0.154 Sum_probs=57.5
Q ss_pred HHHHhhCCCcccHHHHHHHhhcCCChHHHHHHHHHHHhCCCceeee--cccCCCeeeEEeeccccCCCcccCCcccCCCC
Q 026766 25 DVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVV--NIHSKGKKHLMAVEFEPSKEISGGAWYSEGSL 102 (233)
Q Consensus 25 ~~I~~aG~~GIw~~dik~~t~~~l~~~~v~k~LK~Le~k~lIK~vk--sV~~~~rK~Yml~~lePs~eiTGG~wy~d~e~ 102 (233)
-+|++ +.- .-..|.+.| |||.+++...|++|.+-+..-.+. ...+ +.-.|++.+- |-+
T Consensus 27 ~lId~-~~~--nvp~L~~~T--GmPRRTiQd~I~aL~elgI~~~FvQ~G~R~-n~GyY~I~dW--------------G~i 86 (117)
T 3ke2_A 27 HLMDD-ARH--NLLSLGKLT--GMPRRTLQDAIASFADIGIEVEFVQDGERH-NAGYYRIRTW--------------GPI 86 (117)
T ss_dssp HHHHH-SCC--CHHHHHHHH--CCCHHHHHHHHHTGGGGTCEEEEECCTTCC-SCCEEEEEEC--------------TTB
T ss_pred HHHhc-CCC--CHHHHHHHH--CCCHhHHHHHHHHhhhCCeEEEEEeccccC-CCccEEEeec--------------Ccc
Confidence 35666 553 889999999 999999999999999888765544 2332 3346766542 678
Q ss_pred CHHHHHHHHHHHHHHhhhCCCCCHHHH
Q 026766 103 DTEFIKVVKSQCLKQIIKLKVATLEGI 129 (233)
Q Consensus 103 D~efI~~l~~~~~~~i~~~~~~T~~~I 129 (233)
|.+-|..=.+.+..-| +||...+-
T Consensus 87 dk~Wv~~~~~~i~~~L---~~~~~~~~ 110 (117)
T 3ke2_A 87 SSAWMDTHVDEVKSLL---GVDDAVGQ 110 (117)
T ss_dssp CHHHHHHHHHHHHHHH---TCCCHHHH
T ss_pred CHHHHHHHHHHHHHHh---CCCCccch
Confidence 8888876655555544 66665543
No 335
>3qrx_A Centrin; calcium-binding, EF-hand, cell division, calcium binding, ME binding protein-toxin complex; 2.20A {Chlamydomonas reinhardtii} PDB: 2ggm_A 2ami_A 1zmz_A
Probab=66.79 E-value=36 Score=25.16 Aligned_cols=110 Identities=15% Similarity=0.318 Sum_probs=70.0
Q ss_pred CCCCCChHHH----HHHHHHHhhCCCcccHHHHHHHh---hcCCChHHHHHHHHHHHhCCCceeeecccCCCeeeEEeec
Q 026766 12 PSDSLTDHER----LIYDVIRSKQDMGIWTRDMKREL---RVNLPDNIVTKSIKSLQNKSLIKEVVNIHSKGKKHLMAVE 84 (233)
Q Consensus 12 ~~~~L~~~e~----lVy~~I~~aG~~GIw~~dik~~t---~~~l~~~~v~k~LK~Le~k~lIK~vksV~~~~rK~Yml~~ 84 (233)
...+|++++. .++..++..|+--|...+++.-+ +.+++...+...++.+-..+
T Consensus 18 ~~~~l~~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~~~~~~~~~~~~~~~~~d~~~-------------------- 77 (169)
T 3qrx_A 18 GRVGLTEEQKQEIREAFDLFDTDGSGTIDAKELKVAMRALGFEPKKEEIKKMISEIDKDG-------------------- 77 (169)
T ss_dssp --CCCCHHHHHHHHHHHHHHCTTCCSEECHHHHHHHHHHTSCCCCHHHHHHHHHHHCSSS--------------------
T ss_pred cCCCCCHHHHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCC--------------------
Confidence 3567887653 34555666677668888888665 22456667766666552211
Q ss_pred cccCCCcccCCcccCCCCC-HHHHHHHHHHH------------HHHhh--hCCCCCHHHHHHHHHHhCCcccccCHHHHH
Q 026766 85 FEPSKEISGGAWYSEGSLD-TEFIKVVKSQC------------LKQII--KLKVATLEGISDSIKRSGAFKVDLTKQQIE 149 (233)
Q Consensus 85 lePs~eiTGG~wy~d~e~D-~efI~~l~~~~------------~~~i~--~~~~~T~~~I~~~I~~~~i~~~~Ls~~di~ 149 (233)
||.++ .||+..+.... ++.+. ..+++|.+|+..+++..| ..++.++++
T Consensus 78 --------------~g~i~~~eF~~~~~~~~~~~~~~~~~~~~F~~~D~d~~G~i~~~el~~~l~~~g---~~~~~~~~~ 140 (169)
T 3qrx_A 78 --------------SGTIDFEEFLTMMTAKMGERDSREEILKAFRLFDDDNSGTITIKDLRRVAKELG---ENLTEEELQ 140 (169)
T ss_dssp --------------SSSEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCSSSBCHHHHHHHHHHTT---CCCCHHHHH
T ss_pred --------------CCcCCHHHHHHHHHHHhcccCcHHHHHHHHHHhCCCCCCcCCHHHHHHHHHHcC---CCCCHHHHH
Confidence 22232 35665554432 22221 358999999999999888 469999999
Q ss_pred HHHHHHhcC
Q 026766 150 EIVRALVLD 158 (233)
Q Consensus 150 ~il~~Lv~D 158 (233)
.+++.+-.|
T Consensus 141 ~~~~~~D~~ 149 (169)
T 3qrx_A 141 EMIAEADRN 149 (169)
T ss_dssp HHHHHHCCS
T ss_pred HHHHHhCCC
Confidence 999987544
No 336
>2hs5_A Putative transcriptional regulator GNTR; APC6050, rhodococcus SP. RH structural genomics, PSI-2, protein structure initiative; 2.20A {Rhodococcus SP} SCOP: a.4.5.6 a.78.1.1
Probab=66.34 E-value=6.6 Score=32.90 Aligned_cols=48 Identities=15% Similarity=0.263 Sum_probs=38.4
Q ss_pred HHHHHHHHhh-------CCCcccHHHHHHHhhcCCChHHHHHHHHHHHhCCCceeee
Q 026766 21 RLIYDVIRSK-------QDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVV 70 (233)
Q Consensus 21 ~lVy~~I~~a-------G~~GIw~~dik~~t~~~l~~~~v~k~LK~Le~k~lIK~vk 70 (233)
..||+.|.+. -+.=+..++|..+. |+..+.|+.+|+.|+..|||...+
T Consensus 31 ~~v~~~l~~~I~~g~l~pG~~L~e~~La~~l--gVSRtpVREAL~~L~~eGlv~~~~ 85 (239)
T 2hs5_A 31 TRVAGILRDAIIDGTFRPGARLSEPDICAAL--DVSRNTVREAFQILIEDRLVAHEL 85 (239)
T ss_dssp HHHHHHHHHHHHHTSSCTTCEECHHHHHHHH--TCCHHHHHHHHHHHHHTTSEEEET
T ss_pred HHHHHHHHHHHHcCCCCCcCEeCHHHHHHHH--CCCHHHHHHHHHHHHHCCCEEEeC
Confidence 3577776632 12336889999999 999999999999999999997653
No 337
>3fzv_A Probable transcriptional regulator; LYSR, structural genomics, PSI-2, structure initiative; 2.71A {Pseudomonas aeruginosa PA01}
Probab=66.30 E-value=7.9 Score=31.74 Aligned_cols=49 Identities=14% Similarity=0.163 Sum_probs=35.5
Q ss_pred CCCChHHHHHHHHHHhhCCCcccHHHHHHHhhcCCChHHHHHHHHHHHh---CCCcee
Q 026766 14 DSLTDHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQN---KSLIKE 68 (233)
Q Consensus 14 ~~L~~~e~lVy~~I~~aG~~GIw~~dik~~t~~~l~~~~v~k~LK~Le~---k~lIK~ 68 (233)
.+|+-.+-.++..|.+.|+ +.. =.+++ ++++..|++.|++||+ -.|..+
T Consensus 2 ~~~~l~~l~~f~~v~~~~s--~s~--AA~~L--~isq~avS~~i~~LE~~lg~~Lf~R 53 (306)
T 3fzv_A 2 ASYTLRQLKYFVTTVECGS--VAE--ASRKL--YIAQPSISTAVKGLEESFGVQLFIR 53 (306)
T ss_dssp --CCHHHHHHHHHHHHSSS--HHH--HHHHH--TCCC-CHHHHHHHHHHHC-CCCC--
T ss_pred CCCCHHHHHHHHHHHHhCC--HHH--HHHHh--CCCchHHHHHHHHHHHHhCCeeEee
Confidence 4577788888888989888 433 35678 9999999999999996 356544
No 338
>3ihu_A Transcriptional regulator, GNTR family; YP_298823.1, DNA binding protein, structural genomics, joint for structural genomics, JCSG; HET: MSE; 1.92A {Ralstonia eutropha}
Probab=65.80 E-value=6.3 Score=32.35 Aligned_cols=46 Identities=13% Similarity=0.198 Sum_probs=37.4
Q ss_pred HHHHHHHhh-------CCCcccHHHHHHHhhcCCChHHHHHHHHHHHhCCCceee
Q 026766 22 LIYDVIRSK-------QDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEV 69 (233)
Q Consensus 22 lVy~~I~~a-------G~~GIw~~dik~~t~~~l~~~~v~k~LK~Le~k~lIK~v 69 (233)
.||+.|.+. -+.=+..++|..+. |+..+.|+.+|+.|+..|||...
T Consensus 20 ~v~~~l~~~I~~g~l~pG~~L~E~~La~~l--gVSRtpVREAl~~L~~eGlv~~~ 72 (222)
T 3ihu_A 20 TVFFGIMSGLELGTFVPGQRLVETDLVAHF--GVGRNSVREALQRLAAEGIVDLQ 72 (222)
T ss_dssp HHHHHHHHHHHHTSSCTTCEECHHHHHHHH--TCCHHHHHHHHHHHHHTTSEEEC
T ss_pred HHHHHHHHHHHhCCCCCCCccCHHHHHHHH--CCCHHHHHHHHHHHHHCCCEEEe
Confidence 577777643 12335589999999 99999999999999999999764
No 339
>1dtl_A Cardiac troponin C; helix-turn-helix, structural protein; HET: BEP; 2.15A {Gallus gallus} SCOP: a.39.1.5 PDB: 1j1d_A 1j1e_A 2jt3_A 2jt0_A 1la0_A 2jtz_A* 2jt8_A* 2kfx_T* 1wrk_A* 1wrl_A* 1ap4_A 1lxf_C* 1mxl_C 1spy_A 2krd_C* 2l1r_A* 3rv5_A* 2ctn_A 2kgb_C 2jxl_A ...
Probab=65.65 E-value=37 Score=24.82 Aligned_cols=117 Identities=19% Similarity=0.303 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCChHH----HHHHHHHHhhC-CCcccHHHHHHHh---hcCCChHHHHHHHHHHHhCCCceeeecccCCCe
Q 026766 6 RPDSNAPSDSLTDHE----RLIYDVIRSKQ-DMGIWTRDMKREL---RVNLPDNIVTKSIKSLQNKSLIKEVVNIHSKGK 77 (233)
Q Consensus 6 ~~~~~~~~~~L~~~e----~lVy~~I~~aG-~~GIw~~dik~~t---~~~l~~~~v~k~LK~Le~k~lIK~vksV~~~~r 77 (233)
.+........|++++ +.++..+...| +--|...+++.-+ +.+++...+.+.++.+-..+
T Consensus 2 ~~~~~~~~~~l~~~~~~~l~~~F~~~D~~~~~G~i~~~e~~~~l~~~~~~~~~~~~~~~~~~~D~~~------------- 68 (161)
T 1dtl_A 2 DDIYKAAVEQLTEEQKNEFKAAFDIFVLGAEDGSISTKELGKVMRMLGQNPTPEELQEMIDEVDEDG------------- 68 (161)
T ss_dssp ---CTTGGGGSCHHHHHHHHHHHHHHTTTCGGGSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHCTTS-------------
T ss_pred cHHHHHHHhhCCHHHHHHHHHHHHHHcCCCCCCcCcHHHHHHHHHHcCCCCCHHHHHHHHHHhCCCC-------------
Q ss_pred eeEEeeccccCCCcccCCcccCCCCCH-HHHHHHHHHH-----------HHHhh------hCCCCCHHHHHHHHHHhCCc
Q 026766 78 KHLMAVEFEPSKEISGGAWYSEGSLDT-EFIKVVKSQC-----------LKQII------KLKVATLEGISDSIKRSGAF 139 (233)
Q Consensus 78 K~Yml~~lePs~eiTGG~wy~d~e~D~-efI~~l~~~~-----------~~~i~------~~~~~T~~~I~~~I~~~~i~ 139 (233)
+|.++- ||+..+.... +..+. ..+++|.+|+..+++..|
T Consensus 69 ---------------------~g~i~~~eF~~~~~~~~~~~~~~~~~~~~~~~F~~~D~d~~G~i~~~El~~~l~~~g-- 125 (161)
T 1dtl_A 69 ---------------------SGTVDFDEFLVMMVRSMKDDSKGKSEEELSDLFRMFDKNADGYIDLEELKIMLQATG-- 125 (161)
T ss_dssp ---------------------SSSBCHHHHHHHHHHHHC-----CHHHHHHHHHHHHCTTCSSEEEHHHHGGGGTTC---
T ss_pred ---------------------CCeEcHHHHHHHHHHHhcccccchHHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHhC--
Q ss_pred ccccCHHHHHHHHHHHhcCC
Q 026766 140 KVDLTKQQIEEIVRALVLDN 159 (233)
Q Consensus 140 ~~~Ls~~di~~il~~Lv~Dg 159 (233)
..++.++++.+++.+-.|+
T Consensus 126 -~~~~~~~~~~~~~~~D~d~ 144 (161)
T 1dtl_A 126 -ETITEDDIEELMKDGDKNN 144 (161)
T ss_dssp --CCCHHHHHHHHHHHCTTS
T ss_pred -CCCCHHHHHHHHHHhCCCC
No 340
>1rp3_A RNA polymerase sigma factor sigma-28 (FLIA); transcription; 2.30A {Aquifex aeolicus} SCOP: a.4.13.1 a.4.13.2 a.177.1.1 PDB: 1sc5_A
Probab=65.40 E-value=9.9 Score=30.45 Aligned_cols=40 Identities=15% Similarity=0.205 Sum_probs=33.3
Q ss_pred CCCCChHHHHHHHHHHhhCCCcccHHHHHHHhhcCCChHHHHHHH
Q 026766 13 SDSLTDHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSI 57 (233)
Q Consensus 13 ~~~L~~~e~lVy~~I~~aG~~GIw~~dik~~t~~~l~~~~v~k~L 57 (233)
+..|++.++.|+.+.. -.|...++|...+ |++..+|.+.+
T Consensus 185 l~~L~~~~r~vl~l~~---~~g~s~~EIA~~l--gis~~~V~~~~ 224 (239)
T 1rp3_A 185 VSKLPEREKLVIQLIF---YEELPAKEVAKIL--ETSVSRVSQLK 224 (239)
T ss_dssp HTTSCHHHHHHHHHHH---TSCCCHHHHHHHT--TSCHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHH---hcCCCHHHHHHHh--CCCHHHHHHHH
Confidence 5689999998887765 3689999999999 99988887555
No 341
>2hye_C Cullin-4A, CUL-4A; beta propeller, ring finger, zinc finger, propeller cluster, helical repeats, cullin repeats, protein binding; HET: DNA; 3.10A {Homo sapiens} SCOP: a.4.5.34 a.118.17.1 e.40.1.1 PDB: 4a0k_A* 4a0c_C 4a0l_E*
Probab=65.38 E-value=6.5 Score=39.01 Aligned_cols=142 Identities=10% Similarity=0.135 Sum_probs=87.3
Q ss_pred CCChHHHHHHHHHHhhCCCcccHHHHHHHhhcCCChHHHHHHHHHHH--hCCCceeee---cccCCCeeeEEeeccccCC
Q 026766 15 SLTDHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQ--NKSLIKEVV---NIHSKGKKHLMAVEFEPSK 89 (233)
Q Consensus 15 ~L~~~e~lVy~~I~~aG~~GIw~~dik~~t~~~l~~~~v~k~LK~Le--~k~lIK~vk---sV~~~~rK~Yml~~lePs~ 89 (233)
..|.-|..|+-+..+ ...+...+|...| +|+...|.++|..|. ..+++...+ .|. ++-...+-.++....
T Consensus 590 ~vs~~Qa~iLllFn~--~~~lt~~ei~~~t--~i~~~~l~r~L~sL~~~k~~vL~~~p~~~~v~-~~d~f~lN~~f~~~~ 664 (759)
T 2hye_C 590 QVSLFQTLVLLMFNE--GDGFSFEEIKMAT--GIEDSELRRTLQSLACGKARVLIKSPKGKEVE-DGDKFIFNGEFKHKL 664 (759)
T ss_dssp EEEHHHHHHHHHTTS--CCCEEHHHHHHHT--CCCHHHHHHHHHTTTTTTTCSEEETTCSSSCC-SSCEEEECCCCCCSC
T ss_pred EEcHHHHHHHHHhcC--CCCcCHHHHHHHH--CcCHHHHHHHHHHHHccCCceeecCCCCCCCC-CCCEEEeeccccCCc
Confidence 356778888766655 4569999999999 999999999999998 455654321 121 111122222222110
Q ss_pred -Cc----ccCCcccC-------CCCCHHHHHHHHHHHHHHhhhCCCCCHHHHHHHHH-HhCCcccccCHHHHHHHHHHHh
Q 026766 90 -EI----SGGAWYSE-------GSLDTEFIKVVKSQCLKQIIKLKVATLEGISDSIK-RSGAFKVDLTKQQIEEIVRALV 156 (233)
Q Consensus 90 -ei----TGG~wy~d-------~e~D~efI~~l~~~~~~~i~~~~~~T~~~I~~~I~-~~~i~~~~Ls~~di~~il~~Lv 156 (233)
.+ .... -+. .+.+.+=...|..+|.+.++.+...+-+++..-+. ... ...+..+|+.-|+.|+
T Consensus 665 ~riki~~i~~~-e~~~e~~~t~~~v~~dR~~~i~AaIVRIMK~rK~l~h~~Lv~ev~~ql~---F~p~~~~IKk~Ie~LI 740 (759)
T 2hye_C 665 FRIKINQIQMK-ETVEEQVSTTERVFQDRQYQIDAAIVRIMKMRKTLGHNLLVSELYNQLK---FPVKPGDLKKRIESLI 740 (759)
T ss_dssp SSEECGGGGGC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSEEETHHHHHHHHHHSS---SCCCHHHHHHHHHHHH
T ss_pred eEEEecccccc-ccchhhhhhHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHcC---CCCCHHHHHHHHHHHh
Confidence 00 0000 000 11112222256777888888887777777654444 333 5689999999999999
Q ss_pred cCCeEEEEe
Q 026766 157 LDNQIMEVK 165 (233)
Q Consensus 157 ~Dg~ie~v~ 165 (233)
=-+-|++..
T Consensus 741 ereYleR~~ 749 (759)
T 2hye_C 741 DRDYMERDK 749 (759)
T ss_dssp HTTSCBCCS
T ss_pred cccceecCC
Confidence 999998753
No 342
>2dg6_A Putative transcriptional regulator; winged-helix motif, MERR family, gene regulation; 2.20A {Streptomyces coelicolor}
Probab=65.14 E-value=46 Score=28.06 Aligned_cols=84 Identities=6% Similarity=0.127 Sum_probs=49.2
Q ss_pred cHHHHHHHhhcCCChHHHHHHHHHHHhCCCceeeecccCCCeeeEEeeccccCCCcccCCcccCCCCCHHHHHHHHHHHH
Q 026766 36 WTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVVNIHSKGKKHLMAVEFEPSKEISGGAWYSEGSLDTEFIKVVKSQCL 115 (233)
Q Consensus 36 w~~dik~~t~~~l~~~~v~k~LK~Le~k~lIK~vksV~~~~rK~Yml~~lePs~eiTGG~wy~d~e~D~efI~~l~~~~~ 115 (233)
.++++.+.+ |++.++|+ ..|++|||++.+--. .+.+. |+.+=|+.|+.+
T Consensus 2 ~IgevA~~~--Gvs~~TLR----yYE~~GLl~p~~R~~-~gyR~----------------------Y~~~dl~~L~~I-- 50 (222)
T 2dg6_A 2 RLADLSKRS--GVSTATIK----YYLREGLLPPGRQVN-ATTAE----------------------YDEDHLRRLRLV-- 50 (222)
T ss_dssp CHHHHHHHH--TCCHHHHH----HHHHHTSSCCC--------------------------------CCHHHHHHHHHH--
T ss_pred CHHHHHHHH--CcCHHHHH----HHHHCCCCCCCeeCC-CCcee----------------------eCHHHHHHHHHH--
Confidence 568899999 99998875 568899996633211 12222 345555555543
Q ss_pred HHhhhCCCCCHHHHHHHHHHhCCcccccCHHHHHHHH
Q 026766 116 KQIIKLKVATLEGISDSIKRSGAFKVDLTKQQIEEIV 152 (233)
Q Consensus 116 ~~i~~~~~~T~~~I~~~I~~~~i~~~~Ls~~di~~il 152 (233)
..+++....|+++|.+++....- ..-+..++..++
T Consensus 51 ~~lr~~~G~sL~eIk~~l~~~~~--~~~~~~~~l~~~ 85 (222)
T 2dg6_A 51 RALIQVGKVPVATAREVLGHVDD--DSLGRTVRLGAA 85 (222)
T ss_dssp HHHHHTTCCCHHHHHHHHHHHTC--CSSCHHHHHHHH
T ss_pred HHHHHcCCCCHHHHHHHHHhhhc--CCCCHHHHHHHH
Confidence 34555546779999999986541 123444444443
No 343
>2kn2_A Calmodulin; S MAPK phosphatase 1, NTMKP1, tobacco MKP1, metal binding Pro; NMR {Glycine max}
Probab=64.60 E-value=19 Score=24.38 Aligned_cols=55 Identities=16% Similarity=0.204 Sum_probs=40.8
Q ss_pred CCCHHHHHHHHHHHHHHhh-hCCCCCHHHHHHHHHHhCCcccccCHHHHHHHHHHHhcC
Q 026766 101 SLDTEFIKVVKSQCLKQII-KLKVATLEGISDSIKRSGAFKVDLTKQQIEEIVRALVLD 158 (233)
Q Consensus 101 e~D~efI~~l~~~~~~~i~-~~~~~T~~~I~~~I~~~~i~~~~Ls~~di~~il~~Lv~D 158 (233)
..+.+-.+.|++....|=. ..++.|.+|+...++..|. .++.++++.+++.+-.|
T Consensus 2 ~~~~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~g~---~~~~~~~~~l~~~~d~~ 57 (92)
T 2kn2_A 2 HMDTDAEEELKEAFKVFDKDQNGYISASELRHVMINLGE---KLTDEEVEQMIKEADLD 57 (92)
T ss_dssp CCCCHHHHHHHHHHHHHCTTCSSEECHHHHHHHHHHTTC---CCCHHHHHHHHHHHCSS
T ss_pred CCCccHHHHHHHHHHHHCCCCCCeEcHHHHHHHHHHhCC---CCCHHHHHHHHHHhCCC
Confidence 4555666677665544432 3578999999999999884 58999999999987544
No 344
>2ovk_B RLC, myosin regulatory light chain LC-2, mantle muscle; rigor-like, squid, contractIle protein; 2.60A {Todarodes pacificus} PDB: 2ekv_B 2ekw_B 2oy6_B* 3i5f_B* 3i5g_B 3i5h_B 3i5i_B
Probab=64.58 E-value=13 Score=27.31 Aligned_cols=57 Identities=11% Similarity=0.113 Sum_probs=45.3
Q ss_pred CCCCHHHHHHHHHHHHHHh-hhCCCCCHHHHHHHHHHhCCcccccCHHHHHHHHHHHhcCCeE
Q 026766 100 GSLDTEFIKVVKSQCLKQI-IKLKVATLEGISDSIKRSGAFKVDLTKQQIEEIVRALVLDNQI 161 (233)
Q Consensus 100 ~e~D~efI~~l~~~~~~~i-~~~~~~T~~~I~~~I~~~~i~~~~Ls~~di~~il~~Lv~Dg~i 161 (233)
..|..+-++.|++....|= ...+.+|.+|+..+++..|. .++.++++.+++.. ||.|
T Consensus 8 ~~l~~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~g~---~~~~~~~~~~~~~~--~g~i 65 (153)
T 2ovk_B 8 VKLSQRQMQELKEAFTMIDQDRDGFIGMEDLKDMFSSLGR---VPPDDELNAMLKEC--PGQL 65 (153)
T ss_dssp TTCCHHHHHHHHHHHHHHCCSTTTCCCHHHHHHHTTTTTS---CCCHHHHHHHHHHS--SSCC
T ss_pred CCCCHHHHHHHHHHHHHhCCCCCCeECHHHHHHHHHHhCC---CCCHHHHHHHHHHc--CCCC
Confidence 4577778888887665552 34689999999999998885 68999999999987 7765
No 345
>2p5k_A Arginine repressor; DNA-binding domain, winged helix-turn-helix (WHTH), DNA binding protein; 1.00A {Bacillus subtilis} SCOP: a.4.5.3 PDB: 2p5l_C*
Probab=64.22 E-value=26 Score=22.52 Aligned_cols=47 Identities=17% Similarity=0.332 Sum_probs=35.8
Q ss_pred HHHHHhhhCCCCCHHHHHHHHHHhCCcccccCHHHHHHHHHHHhcCCeEEEEee
Q 026766 113 QCLKQIIKLKVATLEGISDSIKRSGAFKVDLTKQQIEEIVRALVLDNQIMEVKS 166 (233)
Q Consensus 113 ~~~~~i~~~~~~T~~~I~~~I~~~~i~~~~Ls~~di~~il~~Lv~Dg~ie~v~~ 166 (233)
.+..++...+.+|++||++.+++.|. .+|..=|..-|+.| |.| ++..
T Consensus 9 ~i~~ll~~~~~~t~~el~~~l~~~~~---~vs~~Tv~R~L~~l---g~v-~~~~ 55 (64)
T 2p5k_A 9 KIREIITSNEIETQDELVDMLKQDGY---KVTQATVSRDIKEL---HLV-KVPT 55 (64)
T ss_dssp HHHHHHHHSCCCSHHHHHHHHHHTTC---CCCHHHHHHHHHHH---TCE-EEEE
T ss_pred HHHHHHHcCCCCCHHHHHHHHHHhCC---CcCHHHHHHHHHHc---CCE-EEec
Confidence 35567777889999999999998873 47777788888744 667 6653
No 346
>2x48_A CAG38821; archeal virus, viral protein; 2.60A {Sulfolobus islandicus rod-shaped virusorganism_taxid}
Probab=64.00 E-value=7.9 Score=24.51 Aligned_cols=35 Identities=14% Similarity=0.294 Sum_probs=26.7
Q ss_pred hHHHHHHHHHHhhCCCcccHHHHHHHhhcCCChHHHHHHHH
Q 026766 18 DHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIK 58 (233)
Q Consensus 18 ~~e~lVy~~I~~aG~~GIw~~dik~~t~~~l~~~~v~k~LK 58 (233)
+....|..+. ..|...++|.+.+ |++.++|.+.++
T Consensus 19 ~~~~~i~~l~----~~g~s~~eIA~~l--gis~~TV~~~l~ 53 (55)
T 2x48_A 19 DLVSVAHELA----KMGYTVQQIANAL--GVSERKVRRYLE 53 (55)
T ss_dssp HHHHHHHHHH----HTTCCHHHHHHHH--TSCHHHHHHHHT
T ss_pred HHHHHHHHHH----HcCCCHHHHHHHH--CcCHHHHHHHHH
Confidence 3444455442 3578999999999 999999999875
No 347
>1ixc_A CBNR, LYSR-type regulatory protein; long alpha helix connecting DNA binding and regulatory domai binding protein; 2.20A {Cupriavidus necator} SCOP: a.4.5.37 c.94.1.1 PDB: 1iz1_A
Probab=63.99 E-value=15 Score=29.90 Aligned_cols=46 Identities=9% Similarity=0.218 Sum_probs=33.9
Q ss_pred ChHHHHHHHHHHhhCCCcccHHHHHHHhhcCCChHHHHHHHHHHHhC---CCcee
Q 026766 17 TDHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNK---SLIKE 68 (233)
Q Consensus 17 ~~~e~lVy~~I~~aG~~GIw~~dik~~t~~~l~~~~v~k~LK~Le~k---~lIK~ 68 (233)
+-.+-.++..|.+.|+ +. .=.+++ +++|..|++.||+||+. .|..+
T Consensus 2 ~l~~l~~f~~v~~~gs--~s--~AA~~L--~isq~avS~~i~~LE~~lg~~Lf~R 50 (294)
T 1ixc_A 2 EFRQLKYFIAVAEAGN--MA--AAAKRL--HVSQPPITRQMQALEADLGVVLLER 50 (294)
T ss_dssp CHHHHHHHHHHHHHSS--HH--HHHHHH--TCCHHHHHHHHHHHHHHHTSCCBC-
T ss_pred cHHHHHHHHHHHHcCC--HH--HHHHHh--CCCcchHHHHHHHHHHHHCCEEEEe
Confidence 3455667777888887 33 335778 99999999999999973 66644
No 348
>3mzy_A RNA polymerase sigma-H factor; PSI, MCSG, structural genomics, midwest center for structura genomics, protein structure initiative; 2.50A {Fusobacterium nucleatum subsp}
Probab=63.73 E-value=14 Score=27.65 Aligned_cols=39 Identities=13% Similarity=0.160 Sum_probs=31.1
Q ss_pred CCChHHHHHHHHHHhhCCCcccHHHHHHHhhcCCChHHHHHHHHH
Q 026766 15 SLTDHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKS 59 (233)
Q Consensus 15 ~L~~~e~lVy~~I~~aG~~GIw~~dik~~t~~~l~~~~v~k~LK~ 59 (233)
.|++.++.|+. . --.|...++|...+ |++..+|.+.+..
T Consensus 109 ~L~~~~r~v~~-~---~~~g~s~~EIA~~l--gis~~tV~~~~~r 147 (164)
T 3mzy_A 109 NFSKFEKEVLT-Y---LIRGYSYREIATIL--SKNLKSIDNTIQR 147 (164)
T ss_dssp HSCHHHHHHHH-H---HTTTCCHHHHHHHH--TCCHHHHHHHHHH
T ss_pred hCCHHHHHHHH-H---HHcCCCHHHHHHHH--CCCHHHHHHHHHH
Confidence 68888888876 2 23689999999999 9999888665543
No 349
>2oqr_A Sensory transduction protein REGX3; response regulator, winged-helix-turn-helix, DNA-binding, 3D swapping, two component system; 2.03A {Mycobacterium tuberculosis H37RV}
Probab=63.43 E-value=12 Score=29.75 Aligned_cols=49 Identities=8% Similarity=0.017 Sum_probs=38.8
Q ss_pred CCCChHHHHHHHHHHhhCCCcccHHHHHHHh-hc--CCChHHHHHHHHHHHh
Q 026766 14 DSLTDHERLIYDVIRSKQDMGIWTRDMKREL-RV--NLPDNIVTKSIKSLQN 62 (233)
Q Consensus 14 ~~L~~~e~lVy~~I~~aG~~GIw~~dik~~t-~~--~l~~~~v~k~LK~Le~ 62 (233)
..||+-|..|+.++.+..++++..++|..++ +. ++..++|...++.|-+
T Consensus 155 ~~Lt~rE~~vL~~l~~~~~~~~s~~~Ia~~lw~~~~~~s~~tv~~hi~~i~~ 206 (230)
T 2oqr_A 155 ITLPLKEFDLLEYLMRNSGRVLTRGQLIDRVWGADYVGDTKTLDVHVKRLRS 206 (230)
T ss_dssp CCCCHHHHHHHHHHHHTTTSCEEHHHHHHHHTSSCCTTHHHHHHHHHHHHHH
T ss_pred eecCHHHHHHHHHHHhCCCceEcHHHHHHHhcCCCCCCCCcCHHHHHHHHHH
Confidence 4699999999999999999999999999987 22 4566777666555543
No 350
>1tw3_A COMT, carminomycin 4-O-methyltransferase; anthracycline, methylate, tailoring enzyme, polyketide, S-adenosyl-L-homocystein; HET: SAH ERT; 2.35A {Streptomyces peucetius} SCOP: a.4.5.29 c.66.1.12 PDB: 1tw2_A*
Probab=63.28 E-value=12 Score=32.48 Aligned_cols=42 Identities=14% Similarity=0.152 Sum_probs=36.0
Q ss_pred HHHHHHhhCCCcccHHHHHHHhhcCCChHHHHHHHHHHHhCCCceee
Q 026766 23 IYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEV 69 (233)
Q Consensus 23 Vy~~I~~aG~~GIw~~dik~~t~~~l~~~~v~k~LK~Le~k~lIK~v 69 (233)
|+++|. .| .+...+|..++ ++++..+++.|+.|...|++.+.
T Consensus 44 i~~~l~-~~--~~t~~ela~~~--~~~~~~l~r~L~~L~~~g~~~~~ 85 (360)
T 1tw3_A 44 LVDHIL-AG--ARTVKALAART--DTRPEALLRLIRHLVAIGLLEED 85 (360)
T ss_dssp HHHHHH-TT--CCBHHHHHHHH--TCCHHHHHHHHHHHHHTTSEEEE
T ss_pred HHHHHh-CC--CCCHHHHHHHh--CcCHHHHHHHHHHHHHCCCEEec
Confidence 455663 23 48999999999 99999999999999999999875
No 351
>1s7o_A Hypothetical UPF0122 protein SPY1201/SPYM3_0842/SPS1042/SPYM18_1152; putative DNA binding protein, structural genomics; 2.31A {Streptococcus pyogenes serotype M3} SCOP: a.4.13.3
Probab=62.81 E-value=14 Score=27.69 Aligned_cols=43 Identities=16% Similarity=0.172 Sum_probs=35.1
Q ss_pred CCCChHHHHHHHHHHhhCCCcccHHHHHHHhhcCCChHHHHHHHHHHH
Q 026766 14 DSLTDHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQ 61 (233)
Q Consensus 14 ~~L~~~e~lVy~~I~~aG~~GIw~~dik~~t~~~l~~~~v~k~LK~Le 61 (233)
..||+.++.|+.+... .|...++|...+ |++.++|.+.+....
T Consensus 21 ~~L~~~~r~vl~l~y~---~g~s~~EIA~~l--giS~~tV~~~l~ra~ 63 (113)
T 1s7o_A 21 ALLTDKQMNYIELYYA---DDYSLAEIADEF--GVSRQAVYDNIKRTE 63 (113)
T ss_dssp GGSCHHHHHHHHHHHH---TCCCHHHHHHHH--TCCHHHHHHHHHHHH
T ss_pred hcCCHHHHHHHHHHHH---cCCCHHHHHHHH--CcCHHHHHHHHHHHH
Confidence 5699999998877654 468999999999 999998887766544
No 352
>2lv7_A Calcium-binding protein 7; metal binding protein; NMR {Homo sapiens}
Probab=62.75 E-value=8.3 Score=27.95 Aligned_cols=56 Identities=11% Similarity=0.169 Sum_probs=43.3
Q ss_pred CCCCHHHHHHHHHHHHHHhh--hCCCCCHHHHHHHHHHhCCcccccCHHHHHHHHHHHhcCC
Q 026766 100 GSLDTEFIKVVKSQCLKQII--KLKVATLEGISDSIKRSGAFKVDLTKQQIEEIVRALVLDN 159 (233)
Q Consensus 100 ~e~D~efI~~l~~~~~~~i~--~~~~~T~~~I~~~I~~~~i~~~~Ls~~di~~il~~Lv~Dg 159 (233)
.++..+-++.|+++- +.+. +.|+.|.+|+...++..|+ .+|.++|+.+++.+=.||
T Consensus 28 ~~l~~~~~~el~~~F-~~~D~d~~G~I~~~El~~~l~~lg~---~~~~~ei~~l~~~~D~d~ 85 (100)
T 2lv7_A 28 VDIPEDELEEIREAF-KVFDRDGNGFISKQELGTAMRSLGY---MPNEVELEVIIQRLDMDG 85 (100)
T ss_dssp CCCCGGGHHHHHHHH-HHTCSSCSSCBCHHHHHHHHHHHTC---CCCTTTHHHHHHHHCSSC
T ss_pred ccCCHHHHHHHHHHH-HHHcCCCCCcCCHHHHHHHHHHhCC---CCCHHHHHHHHHHHCCCC
Confidence 356677778887754 4443 4689999999999999985 589999999999865443
No 353
>3bdn_A Lambda repressor; repressor, allostery; HET: DNA; 3.91A {Enterobacteria phage lambda}
Probab=62.67 E-value=9.1 Score=31.32 Aligned_cols=45 Identities=11% Similarity=0.236 Sum_probs=35.4
Q ss_pred CCCCChHHH----HHHHHHHhh-CCCcccHHHHHHHhhcCCChHHHHHHHHH
Q 026766 13 SDSLTDHER----LIYDVIRSK-QDMGIWTRDMKRELRVNLPDNIVTKSIKS 59 (233)
Q Consensus 13 ~~~L~~~e~----lVy~~I~~a-G~~GIw~~dik~~t~~~l~~~~v~k~LK~ 59 (233)
++.|++.++ .+.+.|++. ...|+.+++|.+++ ++++++|++.++.
T Consensus 4 ~~~lt~~~~~~~~~~~~~l~~~r~~~g~t~~~lA~~~--gis~~~i~~~~~g 53 (236)
T 3bdn_A 4 KKPLTQEQLEDARRLKAIYEKKKNELGLSQESVADKM--GMGQSGVGALFNG 53 (236)
T ss_dssp SCCCCSHHHHHHHHHHHHHHHHTTTTTCCSHHHHHHH--TSCHHHHHHHTTT
T ss_pred cccCCHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHH--CcCHHHHHHHHcC
Confidence 455777776 577777655 46799999999999 9999999987653
No 354
>1r8d_A Transcription activator MTAN; protein-DNA complex, transcription/DNA complex; 2.70A {Bacillus subtilis} SCOP: a.6.1.3 PDB: 1jbg_A
Probab=62.33 E-value=43 Score=24.47 Aligned_cols=71 Identities=7% Similarity=0.082 Sum_probs=47.1
Q ss_pred ccHHHHHHHhhcCCChHHHHHHHHHHHhCCCceeeecccCCCeeeEEeeccccCCCcccCCcccCCCCCHHHHHHHHHHH
Q 026766 35 IWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVVNIHSKGKKHLMAVEFEPSKEISGGAWYSEGSLDTEFIKVVKSQC 114 (233)
Q Consensus 35 Iw~~dik~~t~~~l~~~~v~k~LK~Le~k~lIK~vksV~~~~rK~Yml~~lePs~eiTGG~wy~d~e~D~efI~~l~~~~ 114 (233)
+.++++.+.+ |++.++|.. -|+.||+++...- ..+.+. |+.+-|+.|..+.
T Consensus 3 ~~i~e~A~~~--gvs~~tLR~----ye~~Gll~p~~~~-~~g~R~----------------------Y~~~dl~~l~~I~ 53 (109)
T 1r8d_A 3 YQVKQVAEIS--GVSIRTLHH----YDNIELLNPSALT-DAGYRL----------------------YSDADLERLQQIL 53 (109)
T ss_dssp BCHHHHHHHH--SCCHHHHHH----HHHTTSSCCSEEC-TTCCEE----------------------BCHHHHHHHHHHH
T ss_pred ccHHHHHHHH--CcCHHHHHH----HHHCCCCCCCeEC-CCCCee----------------------eCHHHHHHHHHHH
Confidence 5678899999 999888764 6788999654311 123333 3555566666543
Q ss_pred HHHhhhCCCCCHHHHHHHHHHhC
Q 026766 115 LKQIIKLKVATLEGISDSIKRSG 137 (233)
Q Consensus 115 ~~~i~~~~~~T~~~I~~~I~~~~ 137 (233)
+++.. ..++++|.+++....
T Consensus 54 --~l~~~-G~~l~~I~~~l~~~~ 73 (109)
T 1r8d_A 54 --FFKEI-GFRLDEIKEMLDHPN 73 (109)
T ss_dssp --HHHHT-TCCHHHHHHHHHCTT
T ss_pred --HHHHC-CCCHHHHHHHHhCCC
Confidence 34555 467999999997543
No 355
>2ra5_A Putative transcriptional regulator; beta structure, UTRA domain, structural genomics, PSI-2, protein structure initiative; HET: SRT; 2.40A {Streptomyces coelicolor A3} SCOP: d.190.1.2
Probab=62.24 E-value=1.9 Score=36.65 Aligned_cols=47 Identities=19% Similarity=0.256 Sum_probs=4.9
Q ss_pred HHHHHHHHhhCCCcc--------cHHHHHHHhhcCCChHHHHHHHHHHHhCCCceee
Q 026766 21 RLIYDVIRSKQDMGI--------WTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEV 69 (233)
Q Consensus 21 ~lVy~~I~~aG~~GI--------w~~dik~~t~~~l~~~~v~k~LK~Le~k~lIK~v 69 (233)
..||+.|.+.=..|. ..++|..+. +++..+|+++|+.|++.|+|...
T Consensus 19 ~~i~~~l~~~I~~g~~~~g~~lPse~~La~~~--~vSr~tvr~Al~~L~~~G~i~~~ 73 (247)
T 2ra5_A 19 FQLSQQLEAAIEHGALTPGSLLGNEIELAARL--GLSRPTVRQAIQSLVDKGLLVRR 73 (247)
T ss_dssp ---------------------------------------------------CEEEEE
T ss_pred HHHHHHHHHHHHhCCCCCCCCCcCHHHHHHHH--CcCHHHHHHHHHHHHHCCCEEEE
Confidence 356666654433333 467899999 99999999999999999999764
No 356
>3i53_A O-methyltransferase; CO-complex, rossmann-like fold; HET: SAH; 2.08A {Streptomyces carzinostaticus subsp} PDB: 3i58_A* 3i5u_A* 3i64_A*
Probab=62.20 E-value=19 Score=30.98 Aligned_cols=45 Identities=9% Similarity=0.062 Sum_probs=39.0
Q ss_pred HHHHHHHHHhhCCCcccHHHHHHHhhcCCChHHHHHHHHHHHhCCCceee
Q 026766 20 ERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEV 69 (233)
Q Consensus 20 e~lVy~~I~~aG~~GIw~~dik~~t~~~l~~~~v~k~LK~Le~k~lIK~v 69 (233)
+.-|+++|.+ | ++...+|..++ +++.+.+.+.|..|...|++.+.
T Consensus 27 ~lglf~~l~~-g--~~t~~elA~~~--~~~~~~l~rlLr~l~~~gl~~~~ 71 (332)
T 3i53_A 27 TLRVADHIAA-G--HRTAAEIASAA--GAHADSLDRLLRHLVAVGLFTRD 71 (332)
T ss_dssp HHTHHHHHHT-T--CCBHHHHHHHH--TCCHHHHHHHHHHHHHTTSEEEC
T ss_pred HcChHHHHhc-C--CCCHHHHHHHH--CcCHHHHHHHHHHHHhCCcEEec
Confidence 4457778854 3 69999999999 99999999999999999999874
No 357
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=62.17 E-value=17 Score=31.30 Aligned_cols=59 Identities=17% Similarity=0.084 Sum_probs=42.6
Q ss_pred CCCCChHHHHHHHHHHhhC----CCcccHHHHHHH-------hhc-CCChHHHHHHHHHHHhCCCceeeec
Q 026766 13 SDSLTDHERLIYDVIRSKQ----DMGIWTRDMKRE-------LRV-NLPDNIVTKSIKSLQNKSLIKEVVN 71 (233)
Q Consensus 13 ~~~L~~~e~lVy~~I~~aG----~~GIw~~dik~~-------t~~-~l~~~~v~k~LK~Le~k~lIK~vks 71 (233)
+.+|++.++.++..|.... ...+...+|... .+. .+..+.+.++|+.|+.+|+|.....
T Consensus 283 l~~l~~~~~~~L~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~~gli~~~~~ 353 (389)
T 1fnn_A 283 LIGLPLHEKLFLLAIVRSLKISHTPYITFGDAEESYKIVCEEYGERPRVHSQLWSYLNDLREKGIVETRQN 353 (389)
T ss_dssp HHHSCHHHHHHHHHHHHHHHHHCSSCEEHHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHTTSSEEEEC
T ss_pred HHcCCHHHHHHHHHHHHHHhhccCCCccHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhCCCeEEeee
Confidence 4578888888888777532 115777777543 211 4577999999999999999988654
No 358
>3hhg_A Transcriptional regulator, LYSR family; transcription factor, structur genomics, oxford protein production facility, OPPF; 3.20A {Neisseria meningitidis serogroup B}
Probab=61.85 E-value=17 Score=29.62 Aligned_cols=47 Identities=13% Similarity=0.272 Sum_probs=36.1
Q ss_pred CChHHHHHHHHHHhhCCCcccHHHHHHHhhcCCChHHHHHHHHHHHh---CCCcee
Q 026766 16 LTDHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQN---KSLIKE 68 (233)
Q Consensus 16 L~~~e~lVy~~I~~aG~~GIw~~dik~~t~~~l~~~~v~k~LK~Le~---k~lIK~ 68 (233)
|+-.+-.++..|.+.|+ +. .=.+++ +++|..|++.|++||+ -.|..+
T Consensus 3 ~~l~~l~~f~~v~~~gs--~t--~AA~~L--~isq~avS~~i~~LE~~lg~~Lf~R 52 (306)
T 3hhg_A 3 TNSEELTVFVQVVESGS--FS--RAAEQL--AMANSAVSRIVKRLEEKLGVNLLNR 52 (306)
T ss_dssp CCHHHHHHHHHHHHSSS--HH--HHHHHH--TCCHHHHHHHHHHHHHHHTSCCEET
T ss_pred ccHHHHHHHHHHHHcCC--HH--HHHHHh--CCCHHHHHHHHHHHHHHhCCeeEee
Confidence 56677778888888887 33 335678 9999999999999996 455544
No 359
>2gwr_A DNA-binding response regulator MTRA; two-component regulatory system, transcription regulation, phosphorylation, OMPR family; 2.10A {Mycobacterium tuberculosis} PDB: 3nhz_A
Probab=61.14 E-value=17 Score=29.21 Aligned_cols=48 Identities=15% Similarity=0.057 Sum_probs=37.3
Q ss_pred CCCChHHHHHHHHHHhhCCCcccHHHHHHHh-hc--CCChHHHHHHHHHHH
Q 026766 14 DSLTDHERLIYDVIRSKQDMGIWTRDMKREL-RV--NLPDNIVTKSIKSLQ 61 (233)
Q Consensus 14 ~~L~~~e~lVy~~I~~aG~~GIw~~dik~~t-~~--~l~~~~v~k~LK~Le 61 (233)
..||+-|..|+.++.+..++++..++|..++ +. ++..++|...++.|-
T Consensus 152 ~~LT~rE~~vL~~l~~~~~~~~s~~eIa~~lw~~~~~~s~~tV~~hi~~lr 202 (238)
T 2gwr_A 152 ISLTPLEFDLLVALARKPRQVFTRDVLLEQVWGYRHPADTRLVNVHVQRLR 202 (238)
T ss_dssp ECCCHHHHHHHHHHHHSTTCCBCHHHHHHHHTCCC--CCTHHHHHHHHHHH
T ss_pred cccCHHHHHHHHHHHHCCCceecHHHHHHHHcCCCCCCCcccHHHHHHHHH
Confidence 3599999999999999989999999999987 22 567777655554443
No 360
>1jko_C HIN recombinase, DNA-invertase HIN; water-mediated recognition, protein-DNA complex, A10G mutant, DNA binding protein/DNA complex; 2.24A {Synthetic} SCOP: a.4.1.2 PDB: 1ijw_C* 1jj6_C* 1jj8_C* 1hcr_A 1jkp_C 1jkq_C 1jkr_C
Probab=61.11 E-value=5.3 Score=24.28 Aligned_cols=40 Identities=10% Similarity=0.150 Sum_probs=29.3
Q ss_pred CChHH-HHHHHHHHhhCCCcccHHHHHHHhhcCCChHHHHHHHHHHH
Q 026766 16 LTDHE-RLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQ 61 (233)
Q Consensus 16 L~~~e-~lVy~~I~~aG~~GIw~~dik~~t~~~l~~~~v~k~LK~Le 61 (233)
+++++ ..|..++. .|+..++|.+.+ +++.++|.+.|+.+.
T Consensus 6 ~~~~~~~~i~~l~~----~g~s~~~ia~~l--gvs~~Tv~r~l~~~~ 46 (52)
T 1jko_C 6 INKHEQEQISRLLE----KGHPRQQLAIIF--GIGVSTLYRYFPASS 46 (52)
T ss_dssp SCTTHHHHHHHHHH----TTCCHHHHHHTT--SCCHHHHHHHSCTTC
T ss_pred CCHHHHHHHHHHHH----cCCCHHHHHHHH--CCCHHHHHHHHHHcc
Confidence 44443 34555543 368999999999 999999999887644
No 361
>4a0z_A Transcription factor FAPR; lipid homeostasis; HET: MLC; 1.90A {Staphylococcus aureus} PDB: 4a0y_A 4a0x_A* 4a12_A
Probab=61.08 E-value=6.3 Score=32.57 Aligned_cols=67 Identities=12% Similarity=0.068 Sum_probs=53.5
Q ss_pred HHHHHHHHHHhhCCCcccHHHHHHHhhcCCChHHHHHHHHHHHhCCCceeeecccC----------CCeeeEEeeccccC
Q 026766 19 HERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVVNIHS----------KGKKHLMAVEFEPS 88 (233)
Q Consensus 19 ~e~lVy~~I~~aG~~GIw~~dik~~t~~~l~~~~v~k~LK~Le~k~lIK~vksV~~----------~~rK~Yml~~lePs 88 (233)
-+..|++++++.|. +...||...+ +.+..+++|=|..|...+|.++++.+-. ....+.-|-+++|.
T Consensus 13 R~~~i~~~l~~~~~--~~~~~la~~~--~vs~~TiRrDl~eL~~~~l~~r~~~~A~~~~~~~~s~~~~e~vgelv~~~~g 88 (190)
T 4a0z_A 13 RREAIRQQIDSNPF--ITDHELSDLF--QVSIQTIRLDRTYLNIPELRKRIKLVAEKNYDQISSIEEQEFIGDLIQVNPN 88 (190)
T ss_dssp HHHHHHHHHHHCTT--CCHHHHHHHH--TSCHHHHHHHHHHHTCCCHHHHHHHHHHHHHTTCCSSCGGGCCSEEEEEETT
T ss_pred HHHHHHHHHHHCCC--EeHHHHHHHH--CCCHHHHHHHHHHhcCcchhhHhhhhhhccchhhcccchhhhhhhhhhccCC
Confidence 35688999999887 9999999999 9999999999999999999998876521 12234456666776
Q ss_pred C
Q 026766 89 K 89 (233)
Q Consensus 89 ~ 89 (233)
.
T Consensus 89 ~ 89 (190)
T 4a0z_A 89 V 89 (190)
T ss_dssp T
T ss_pred c
Confidence 4
No 362
>1xsv_A Hypothetical UPF0122 protein SAV1236; helix-turn-helix, putative DNA-binding protein, signal recognition particle, unknown function; 1.70A {Staphylococcus aureus subsp} SCOP: a.4.13.3
Probab=61.06 E-value=15 Score=27.38 Aligned_cols=42 Identities=14% Similarity=0.198 Sum_probs=33.6
Q ss_pred CCCChHHHHHHHHHHhhCCCcccHHHHHHHhhcCCChHHHHHHHHHH
Q 026766 14 DSLTDHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSL 60 (233)
Q Consensus 14 ~~L~~~e~lVy~~I~~aG~~GIw~~dik~~t~~~l~~~~v~k~LK~L 60 (233)
..||+.++.|+.+... .|...++|...+ |++.++|.+.+...
T Consensus 24 ~~L~~~~r~vl~l~~~---~g~s~~EIA~~l--giS~~tV~~~l~ra 65 (113)
T 1xsv_A 24 SLLTNKQRNYLELFYL---EDYSLSEIADTF--NVSRQAVYDNIRRT 65 (113)
T ss_dssp GGSCHHHHHHHHHHHT---SCCCHHHHHHHT--TCCHHHHHHHHHHH
T ss_pred hcCCHHHHHHHHHHHH---cCCCHHHHHHHH--CcCHHHHHHHHHHH
Confidence 5799999998877653 568999999999 99988877655443
No 363
>2di3_A Bacterial regulatory proteins, GNTR family; helix-turn-helix, transcription; 2.05A {Corynebacterium glutamicum}
Probab=60.94 E-value=6 Score=32.84 Aligned_cols=31 Identities=13% Similarity=0.264 Sum_probs=28.9
Q ss_pred cHHHHHHHhhcCCChHHHHHHHHHHHhCCCcee
Q 026766 36 WTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKE 68 (233)
Q Consensus 36 w~~dik~~t~~~l~~~~v~k~LK~Le~k~lIK~ 68 (233)
..++|.++. |+..+.|+.+|+.|+..|||..
T Consensus 30 sE~~La~~l--gVSRtpVREAL~~L~~~GlV~~ 60 (239)
T 2di3_A 30 SERALSETL--GVSRSSLREALRVLEALGTIST 60 (239)
T ss_dssp CHHHHHHHH--TCCHHHHHHHHHHHHHHTSEEC
T ss_pred CHHHHHHHH--CCCHHHHHHHHHHHHHCCCeEe
Confidence 467999999 9999999999999999999965
No 364
>3szp_A Transcriptional regulator, LYSR family; winged helix-turn helix, DNA-binding, transcription factor; 2.20A {Vibrio cholerae} PDB: 3t1b_B
Probab=60.77 E-value=18 Score=28.98 Aligned_cols=46 Identities=11% Similarity=0.270 Sum_probs=34.4
Q ss_pred ChHHHHHHHHHHhhCCCcccHHHHHHHhhcCCChHHHHHHHHHHHh---CCCcee
Q 026766 17 TDHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQN---KSLIKE 68 (233)
Q Consensus 17 ~~~e~lVy~~I~~aG~~GIw~~dik~~t~~~l~~~~v~k~LK~Le~---k~lIK~ 68 (233)
+-.+-.++..|.+.|+ +.. =.+++ +++|..|++.||+||+ -.|..+
T Consensus 2 ~l~~l~~f~~v~~~~s--~t~--AA~~L--~isq~avS~~i~~LE~~lg~~Lf~R 50 (291)
T 3szp_A 2 KLDDLNLFRLVVENGS--YTS--TSKKT--MIPVATITRRIQALEDSLNLRLLNR 50 (291)
T ss_dssp CHHHHHHHHHHHHHSS--HHH--HHHHH--TCCHHHHHHHHHHHHHHHTCCCEEE
T ss_pred CHHHHHHHHHHHhcCC--HHH--HHHHh--CCCHHHHHHHHHHHHHHhCCceEee
Confidence 4455667777778877 333 35668 9999999999999996 567665
No 365
>3dp7_A SAM-dependent methyltransferase; structural genomics, protein structure initiative, NEW YORK structural genomix research; 2.33A {Bacteroides vulgatus}
Probab=60.71 E-value=12 Score=32.91 Aligned_cols=43 Identities=12% Similarity=0.156 Sum_probs=36.6
Q ss_pred HHHHHHhhCCCcccHHHHHHHhhcCCChHHHHHHHHHHHhCCCcee
Q 026766 23 IYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKE 68 (233)
Q Consensus 23 Vy~~I~~aG~~GIw~~dik~~t~~~l~~~~v~k~LK~Le~k~lIK~ 68 (233)
|+++|.+++ .++...+|..++ +++.+.+.+.|..|...|++.+
T Consensus 40 ifd~L~~~~-~~~t~~eLA~~~--g~~~~~l~rlLr~l~~~g~l~~ 82 (363)
T 3dp7_A 40 IFQLLSGKR-EGYTLQEISGRT--GLTRYAAQVLLEASLTIGTILL 82 (363)
T ss_dssp HHHHHHTCT-TCBCHHHHHHHH--TCCHHHHHHHHHHHHHHTSEEE
T ss_pred HHHHHHhcC-CCCCHHHHHHHh--CcCHHHHHHHHHHHhhCCCeEe
Confidence 455555533 469999999999 9999999999999999999976
No 366
>4gyi_A RIO2 kinase; protein kinase, ADP complex, phosphoaspartate, acyl-phosphat ribosome biogenesis, Ser/Thr protein kinase; HET: PHD ADP; 2.20A {Chaetomium thermophilum} PDB: 4gyg_A
Probab=60.56 E-value=8.2 Score=35.60 Aligned_cols=63 Identities=17% Similarity=0.149 Sum_probs=48.7
Q ss_pred CCCCCCCCChHHHHHHHHHHhhCCC--cccHHHHHHHhhcCCC--hHHHHHHHHHHHhCCCceeeeccc
Q 026766 9 SNAPSDSLTDHERLIYDVIRSKQDM--GIWTRDMKRELRVNLP--DNIVTKSIKSLQNKSLIKEVVNIH 73 (233)
Q Consensus 9 ~~~~~~~L~~~e~lVy~~I~~aG~~--GIw~~dik~~t~~~l~--~~~v~k~LK~Le~k~lIK~vksV~ 73 (233)
.++.++.|++++..|+..||..-.. =+-...|.+-+ +|. ..-+.++|+.|...+||...++..
T Consensus 5 ~~~~~r~l~~~d~rvL~ave~g~~~he~vp~~~i~~~~--~l~~~~~~~~~~l~~l~~~~lv~~~~~~~ 71 (397)
T 4gyi_A 5 DTRAMRHLTAEDWRVLTAVEMGSKNHEIVPTPLIEKIA--RLRGGSSGVHKSIATLAKAGLIARMKEAK 71 (397)
T ss_dssp CCSGGGTCCHHHHHHHHHHHHHTTTCSSEEHHHHHHHH--CSSSCCCSHHHHHHHHHHTTSEEEEECSS
T ss_pred CHHHHhhcCHHHHHHHHHHHhccCCcccccHHHHHHHh--CCCCchHhHHHHHHhhhhcCceeeccCCC
Confidence 4567899999999999999854221 23346688888 885 457999999999999998876543
No 367
>2xub_A DNA-directed RNA polymerase III subunit RPC3; transcription, winged helix; 2.80A {Homo sapiens} PDB: 2xv4_S
Probab=60.45 E-value=18 Score=34.32 Aligned_cols=47 Identities=9% Similarity=0.164 Sum_probs=37.6
Q ss_pred HHHHHHHHHHhhCCCcccHHHHHHHhhcCCChHHHHHHHHHHHhCCCceee
Q 026766 19 HERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEV 69 (233)
Q Consensus 19 ~e~lVy~~I~~aG~~GIw~~dik~~t~~~l~~~~v~k~LK~Le~k~lIK~v 69 (233)
.-..|+.+|...|. +..++|.+.+ .|+.+.++++|=+|-+.|+|.-.
T Consensus 361 ~a~RI~r~L~~~~~--l~d~~ia~~a--~i~~k~vR~~Ly~L~~~g~v~~q 407 (534)
T 2xub_A 361 RCARIFRLVLQKKH--IEQKQVEDFA--MIPAKEAKDMLYKMLSENFMSLQ 407 (534)
T ss_dssp HHHHHHHHHHHC-----CHHHHHHHH--CSCHHHHHHHHHHHHHTTCC---
T ss_pred HHHHHHHHHHHcCC--CCHHHHHHHh--CCCHHHHHHHHHHHHHCCCeEEE
Confidence 44568888888886 9999999999 99999999999999999998543
No 368
>1ub9_A Hypothetical protein PH1061; helix-turn-helix motif, winged helix motif, structural genom transcription; 2.05A {Pyrococcus horikoshii} SCOP: a.4.5.28
Probab=59.86 E-value=26 Score=24.20 Aligned_cols=52 Identities=17% Similarity=0.218 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHhhhCCCCCHHHHHHHHHHhCCcccccCHHHHHHHHHHHhcCCeEEEEee
Q 026766 107 IKVVKSQCLKQIIKLKVATLEGISDSIKRSGAFKVDLTKQQIEEIVRALVLDNQIMEVKS 166 (233)
Q Consensus 107 I~~l~~~~~~~i~~~~~~T~~~I~~~I~~~~i~~~~Ls~~di~~il~~Lv~Dg~ie~v~~ 166 (233)
-+..+-.++.+|...+..|..+|.+.+ .++..-|-..|+.|+-.|.|+....
T Consensus 14 ~~~~~~~iL~~L~~~~~~~~~ela~~l--------~is~~tvs~~l~~L~~~gli~~~~~ 65 (100)
T 1ub9_A 14 GNPVRLGIMIFLLPRRKAPFSQIQKVL--------DLTPGNLDSHIRVLERNGLVKTYKV 65 (100)
T ss_dssp HSHHHHHHHHHHHHHSEEEHHHHHHHT--------TCCHHHHHHHHHHHHHTTSEEEEEE
T ss_pred CChHHHHHHHHHHhcCCcCHHHHHHHH--------CcCHHHHHHHHHHHHHCCCEEEEec
Confidence 344566678888766778899998866 3778889999999999999997653
No 369
>2lmt_A Calmodulin-related protein 97A; spermatogenesis, metal binding protein; NMR {Drosophila melanogaster} PDB: 2lmu_A 2lmv_A
Probab=59.80 E-value=50 Score=24.37 Aligned_cols=120 Identities=13% Similarity=0.132 Sum_probs=73.6
Q ss_pred CCCCChHHH----HHHHHHHhhCCCcccHHHHHHHh---hcCCChHHHHHHHHHHHhCCCceeeecccCCCeeeEE--ee
Q 026766 13 SDSLTDHER----LIYDVIRSKQDMGIWTRDMKREL---RVNLPDNIVTKSIKSLQNKSLIKEVVNIHSKGKKHLM--AV 83 (233)
Q Consensus 13 ~~~L~~~e~----lVy~~I~~aG~~GIw~~dik~~t---~~~l~~~~v~k~LK~Le~k~lIK~vksV~~~~rK~Ym--l~ 83 (233)
|..||++|. .+++.+...|+--|...+++.-. +.++....+...+..+-..+- +.--|- +.
T Consensus 1 Ms~lt~eqi~el~~~F~~~D~d~~G~I~~~El~~~l~~~~~~~~~~~~~~~~~~~d~~~~----------g~i~~~ef~~ 70 (148)
T 2lmt_A 1 MSELTEEQIAEFKDAFVQFDKEGTGKIATRELGTLMRTLGQNPTEAELQDLIAEAENNNN----------GQLNFTEFCG 70 (148)
T ss_dssp CCSCCSHHHHHHHHHHHHHHCSSCCEEEGGGHHHHHHHHTCCCCHHHHHHHHHHHHTTST----------TEEEHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHcCCCCCeECHHHHHHHHHhcCCCchHHHHHHHHHhcccCCC----------CcccHHHHHH
Confidence 456887664 46788888888889999988664 346777788877777654321 111110 00
Q ss_pred ccccCCCcccCCcccCCCCCHHHHHHHHHHHHHHhh--hCCCCCHHHHHHHHHHhCCcccccCHHHHHHHHHHHhcC
Q 026766 84 EFEPSKEISGGAWYSEGSLDTEFIKVVKSQCLKQII--KLKVATLEGISDSIKRSGAFKVDLTKQQIEEIVRALVLD 158 (233)
Q Consensus 84 ~lePs~eiTGG~wy~d~e~D~efI~~l~~~~~~~i~--~~~~~T~~~I~~~I~~~~i~~~~Ls~~di~~il~~Lv~D 158 (233)
-+.. ........ +.|+. +++.+. ..|+.|.+|+...+...|. .++.++++.+++.+=.|
T Consensus 71 ~~~~---------~~~~~~~~---~~l~~-aF~~~D~d~~G~I~~~El~~~l~~~g~---~~~~~e~~~l~~~~D~d 131 (148)
T 2lmt_A 71 IMAK---------QMRETDTE---EEMRE-AFKIFDRDGDGFISPAELRFVMINLGE---KVTDEEIDEMIREADFD 131 (148)
T ss_dssp HHHH---------TTTTTTTH---HHHHH-HHHHHHSSCSSEECHHHHHHHHHHHTC---CCCHHHHHHHHHHHCCS
T ss_pred HHHH---------HhcccCcH---HHHHH-HHHHHCCCCcCcCcHHHHHHHHHHcCc---cccHHHHHHHHHHhCCC
Confidence 0000 00000001 22333 344443 4689999999999999884 68999999999887554
No 370
>1eh2_A EPS15; calcium binding, signaling domain, NPF binding, EF-hand, EH domain; NMR {Homo sapiens} SCOP: a.39.1.6 PDB: 2jxc_A 1f8h_A 1ff1_A
Probab=59.52 E-value=17 Score=26.73 Aligned_cols=59 Identities=10% Similarity=0.024 Sum_probs=39.9
Q ss_pred ccCCcccCCCCCHHHHHHHHHHHHHHhhhCCCCCHHHHHHHHHHhCCcccccCHHHHHHHHHHHhcCC
Q 026766 92 SGGAWYSEGSLDTEFIKVVKSQCLKQIIKLKVATLEGISDSIKRSGAFKVDLTKQQIEEIVRALVLDN 159 (233)
Q Consensus 92 TGG~wy~d~e~D~efI~~l~~~~~~~i~~~~~~T~~~I~~~I~~~~i~~~~Ls~~di~~il~~Lv~Dg 159 (233)
.|++|- +..+-++.++++-..|=...+++|.+|+...++++| |+.+++++|++..=.||
T Consensus 3 ~~~~w~----ls~~e~~~~~~~F~~~D~~dG~Is~~el~~~l~~~g-----l~~~el~~i~~~~D~d~ 61 (106)
T 1eh2_A 3 WGSPWA----VKPEDKAKYDAIFDSLSPVNGFLSGDKVKPVLLNSK-----LPVDILGRVWELSDIDH 61 (106)
T ss_dssp ---CCS----SCHHHHHHHHHHHTTSCCSSSCCBHHHHHHHHHTTT-----CCHHHHHHHHHHHCSSC
T ss_pred cCCCCC----CCHHHHHHHHHHHHHhCCCCCeEcHHHHHHHHHHcC-----CCHHHHHHHHHHHcCCC
Confidence 356666 344555566555433323568999999999999876 77999999998765543
No 371
>3ox6_A Calcium-binding protein 1; EF-hand, calcium-sensor; 2.40A {Homo sapiens} PDB: 3ox5_A 2lan_A 2lap_A 2k7b_A 2k7c_A 2k7d_A
Probab=59.03 E-value=46 Score=23.78 Aligned_cols=56 Identities=14% Similarity=0.128 Sum_probs=43.9
Q ss_pred CCCCHHHHHHHHHHHHHHh-hhCCCCCHHHHHHHHHHhCCcccccCHHHHHHHHHHHhcC
Q 026766 100 GSLDTEFIKVVKSQCLKQI-IKLKVATLEGISDSIKRSGAFKVDLTKQQIEEIVRALVLD 158 (233)
Q Consensus 100 ~e~D~efI~~l~~~~~~~i-~~~~~~T~~~I~~~I~~~~i~~~~Ls~~di~~il~~Lv~D 158 (233)
..|..+-+..|++....+= ...+..|.+|+..+++..|. .++.++++.+++.+--|
T Consensus 3 ~~l~~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~~~---~~~~~~~~~l~~~~d~~ 59 (153)
T 3ox6_A 3 RSLRPEEIEELREAFREFDKDKDGYINCRDLGNCMRTMGY---MPTEMELIELSQQINMN 59 (153)
T ss_dssp SCCCHHHHHHHHHHHHHHHHHCSSSCCHHHHHHHHHHTTC---CCCHHHHHHHHHHHHTT
T ss_pred ccCCHHHHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHcCC---CCCHHHHHHHHHHhCCC
Confidence 3567777888877766653 35689999999999999885 58899999999887654
No 372
>1lmb_3 Protein (lambda repressor); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 1.80A {Enterobacteria phage lambda} SCOP: a.35.1.2 PDB: 1lrp_A 1rio_A 1lli_A*
Probab=58.79 E-value=11 Score=26.10 Aligned_cols=26 Identities=8% Similarity=0.240 Sum_probs=22.1
Q ss_pred CCCcccHHHHHHHhhcCCChHHHHHHHH
Q 026766 31 QDMGIWTRDMKRELRVNLPDNIVTKSIK 58 (233)
Q Consensus 31 G~~GIw~~dik~~t~~~l~~~~v~k~LK 58 (233)
...|+.++++.+++ |+++.+|++..+
T Consensus 27 ~~~glsq~~lA~~~--gis~~~is~~e~ 52 (92)
T 1lmb_3 27 NELGLSQESVADKM--GMGQSGVGALFN 52 (92)
T ss_dssp HHHTCCHHHHHHHH--TSCHHHHHHHHT
T ss_pred HHcCCCHHHHHHHH--CcCHHHHHHHHc
Confidence 45689999999999 999999887654
No 373
>2k4b_A Transcriptional regulator; DNA binding protein, winged helix; NMR {Lactococcus lactis subsp}
Probab=58.57 E-value=6.8 Score=29.03 Aligned_cols=50 Identities=16% Similarity=0.249 Sum_probs=40.8
Q ss_pred HHHHHhhhCCCCCHHHHHHHHHHhCCcccccCHHHHHHHHHHHhcCCeEEEEee
Q 026766 113 QCLKQIIKLKVATLEGISDSIKRSGAFKVDLTKQQIEEIVRALVLDNQIMEVKS 166 (233)
Q Consensus 113 ~~~~~i~~~~~~T~~~I~~~I~~~~i~~~~Ls~~di~~il~~Lv~Dg~ie~v~~ 166 (233)
.++.+|.+.+.+|..||.+.+... ..++..-|..+|+.|+=.|.|++.+.
T Consensus 39 ~VL~~L~~~~~~t~~eL~~~l~~~----~~~s~sTVt~~L~rLe~KGlV~R~~~ 88 (99)
T 2k4b_A 39 IVMRVIWSLGEARVDEIYAQIPQE----LEWSLATVKTLLGRLVKKEMLSTEKE 88 (99)
T ss_dssp HHHHHHHHHSCEEHHHHHHTCCGG----GCCCHHHHHHHHHHHHHTTSCEEEEE
T ss_pred HHHHHHHhCCCCCHHHHHHHHhcc----cCCCHhhHHHHHHHHHHCCCEEEEeC
Confidence 456666667789999999988643 25788999999999999999998764
No 374
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=58.30 E-value=23 Score=30.40 Aligned_cols=58 Identities=14% Similarity=0.107 Sum_probs=40.6
Q ss_pred CCCCChHHHHHHHHHHhhCCC-c-c--cHHHHHHHhhc-CCChHHHHHHHHHHHhCCCceeeec
Q 026766 13 SDSLTDHERLIYDVIRSKQDM-G-I--WTRDMKRELRV-NLPDNIVTKSIKSLQNKSLIKEVVN 71 (233)
Q Consensus 13 ~~~L~~~e~lVy~~I~~aG~~-G-I--w~~dik~~t~~-~l~~~~v~k~LK~Le~k~lIK~vks 71 (233)
+.+|++.|+.++..|.. +.. | + -...+.+..|. .++.+.+.++|+.|+.+|+|.....
T Consensus 279 ~~~l~~~~~~~l~al~~-~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~l~~L~~~gli~~~~~ 341 (384)
T 2qby_B 279 VKALPFHYKLALRSLIE-SEDVMSAHKMYTDLCNKFKQKPLSYRRFSDIISELDMFGIVKIRII 341 (384)
T ss_dssp HHSSCHHHHHHHHHHHT-CCBHHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHTTSEEEEEE
T ss_pred HHcCCHHHHHHHHHHHH-hcccChHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhCCCEEEEec
Confidence 35789999999888876 333 2 2 12344445521 3677999999999999999987543
No 375
>1qzz_A RDMB, aclacinomycin-10-hydroxylase; anthracycline, methyltransferase, polyketide, tailoring enzymes, structural proteomics in E spine; HET: SAM; 2.10A {Streptomyces purpurascens} SCOP: a.4.5.29 c.66.1.12 PDB: 1r00_A* 1xds_A* 1xdu_A*
Probab=58.24 E-value=15 Score=31.93 Aligned_cols=54 Identities=7% Similarity=0.081 Sum_probs=40.5
Q ss_pred HHHHHHhhCCCcccHHHHHHHhhcCCChHHHHHHHHHHHhCCCceeeecccCCCeeeEEeecc
Q 026766 23 IYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVVNIHSKGKKHLMAVEF 85 (233)
Q Consensus 23 Vy~~I~~aG~~GIw~~dik~~t~~~l~~~~v~k~LK~Le~k~lIK~vksV~~~~rK~Yml~~l 85 (233)
|+++|. .| .+...+|..++ ++++..+.+.|+.|...|++.+.. .+...|-+..+
T Consensus 41 i~~~l~-~~--~~t~~eLA~~~--g~~~~~l~r~Lr~L~~~Gll~~~~----~~~~~y~~t~~ 94 (374)
T 1qzz_A 41 LVDHLL-AG--ADTLAGLADRT--DTHPQALSRLVRHLTVVGVLEGGE----KQGRPLRPTRL 94 (374)
T ss_dssp HHHHHH-TT--CCSHHHHHHHH--TCCHHHHHHHHHHHHHTTSEECCC----C-CCCCEECTT
T ss_pred hHHHHh-CC--CCCHHHHHHHh--CcCHHHHHHHHHHHhhCCCEEEeC----CCCeEEEEChH
Confidence 445552 23 48999999999 999999999999999999998732 12125666654
No 376
>2cfx_A HTH-type transcriptional regulator LRPC; transcriptional regulation, DNA binding, FFRP; 2.4A {Bacillus subtilis} SCOP: a.4.5.32 d.58.4.2
Probab=58.22 E-value=24 Score=26.80 Aligned_cols=49 Identities=18% Similarity=0.209 Sum_probs=42.2
Q ss_pred HHHHHHHHHhhhCCCCCHHHHHHHHHHhCCcccccCHHHHHHHHHHHhcCCeEEEEe
Q 026766 109 VVKSQCLKQIIKLKVATLEGISDSIKRSGAFKVDLTKQQIEEIVRALVLDNQIMEVK 165 (233)
Q Consensus 109 ~l~~~~~~~i~~~~~~T~~~I~~~I~~~~i~~~~Ls~~di~~il~~Lv~Dg~ie~v~ 165 (233)
.+...++..|+..+..|..||++.+. +|..-|...|+.|.-.|.|....
T Consensus 5 ~~d~~il~~L~~~~~~s~~ela~~lg--------~s~~tv~~~l~~L~~~G~i~~~~ 53 (144)
T 2cfx_A 5 QIDLNIIEELKKDSRLSMRELGRKIK--------LSPPSVTERVRQLESFGIIKQYT 53 (144)
T ss_dssp HHHHHHHHHHHHCSCCCHHHHHHHHT--------CCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHC--------cCHHHHHHHHHHHHHCCCeEEEe
Confidence 45667888998888999999998763 78899999999999999998764
No 377
>1fp1_D Isoliquiritigenin 2'-O-methyltransferase; protein-substrate, protein-product complex; HET: SAH HCC; 1.82A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpq_A*
Probab=58.12 E-value=7.7 Score=34.21 Aligned_cols=45 Identities=13% Similarity=0.310 Sum_probs=36.1
Q ss_pred HHHHHHhhCCCc--ccHHHHHHHhhcCC------ChHHHHHHHHHHHhCCCceee
Q 026766 23 IYDVIRSKQDMG--IWTRDMKRELRVNL------PDNIVTKSIKSLQNKSLIKEV 69 (233)
Q Consensus 23 Vy~~I~~aG~~G--Iw~~dik~~t~~~l------~~~~v~k~LK~Le~k~lIK~v 69 (233)
|+++|.++|+.| +...+|..++ ++ +++.+.|.|+.|...|++++.
T Consensus 49 if~~L~~~g~pg~~~t~~eLA~~~--~~~~~~~~~~~~l~rlLr~L~~~gll~~~ 101 (372)
T 1fp1_D 49 LFEIIAKATPPGAFMSPSEIASKL--PASTQHSDLPNRLDRMLRLLASYSVLTST 101 (372)
T ss_dssp HHHHHHTCSSTTCCBCHHHHHTTS--CGGGCCTTHHHHHHHHHHHHHHTTSEEEE
T ss_pred hHHHHHhcCCCCCCcCHHHHHHhc--CCCCCCCcChHHHHHHHHHHhhCCceEec
Confidence 345555544223 9999999999 99 678999999999999999875
No 378
>2esh_A Conserved hypothetical protein TM0937; APC5794, structural genomics, PSI, protein structure initiative; 2.30A {Thermotoga maritima} SCOP: a.4.5.61
Probab=58.03 E-value=35 Score=25.22 Aligned_cols=72 Identities=10% Similarity=0.022 Sum_probs=52.3
Q ss_pred HHHHHHHHHHhhhCCCCCHHHHHHHHHHhCCcccccCH-HHHHHHHHHHhcCCeEEEEeeCCCCCcccccCcceeeeccc
Q 026766 108 KVVKSQCLKQIIKLKVATLEGISDSIKRSGAFKVDLTK-QQIEEIVRALVLDNQIMEVKSNGSGEFTNIPVGKVCYKNVS 186 (233)
Q Consensus 108 ~~l~~~~~~~i~~~~~~T~~~I~~~I~~~~i~~~~Ls~-~di~~il~~Lv~Dg~ie~v~~~~~g~f~~~~~g~~~Yr~~~ 186 (233)
..++-.++..|.. +..+.-+|.+.|.+.|.....++. ..|-.+|+.|+-+|.|+.......+ ..+..|+++.
T Consensus 12 ~~~~~~IL~~L~~-~~~~gyel~~~l~~~g~~~~~is~~~tly~~L~~Le~~GlI~~~~~~~~~------~~r~~Y~LT~ 84 (118)
T 2esh_A 12 WWLASTILLLVAE-KPSHGYELAERLAEFGIEIPGIGHMGNIYRVLADLEESGFLSTEWDTTVS------PPRKIYRITP 84 (118)
T ss_dssp HHHHHHHHHHHHH-SCBCHHHHHHHHHTTCCSSTTCCCCCCHHHHHHHHHHTTSEEEEEECSSS------SCEEEEEECH
T ss_pred chHHHHHHHHHHc-CCCCHHHHHHHHHHhCCcccCCCCcchHHHHHHHHHHCCCeEEEeecCCC------CCceEEEECh
Confidence 3466677888866 568899999999886643334788 8899999999999999987532111 2346687654
No 379
>3f8b_A Transcriptional regulator, PADR-like family; winged helix turn helix, transcription regulator; 2.00A {Lactococcus lactis subsp} SCOP: a.4.5.0 PDB: 3f8c_A* 3f8f_A*
Probab=57.80 E-value=55 Score=24.24 Aligned_cols=79 Identities=15% Similarity=0.187 Sum_probs=54.9
Q ss_pred CCHHHHHH-HHHHHHHHhhhCCCCCHHHHHHHHHHhCCcccccCHHHHHHHHHHHhcCCeEEEEeeCCCCCcccccCcce
Q 026766 102 LDTEFIKV-VKSQCLKQIIKLKVATLEGISDSIKRSGAFKVDLTKQQIEEIVRALVLDNQIMEVKSNGSGEFTNIPVGKV 180 (233)
Q Consensus 102 ~D~efI~~-l~~~~~~~i~~~~~~T~~~I~~~I~~~~i~~~~Ls~~di~~il~~Lv~Dg~ie~v~~~~~g~f~~~~~g~~ 180 (233)
.+.+|+.. |.-.++..|.. +..+--+|.+.|.+.......++..-|-.+|+.|+-+|.|+.......+ ...+.
T Consensus 4 ~~~~~~~g~l~~~IL~~L~~-~~~~Gyei~~~l~~~~~~~~~i~~gtly~~L~rLe~~GlI~~~~~~~~~-----~~~rk 77 (116)
T 3f8b_A 4 IPKEMLRAQTNVILLNVLKQ-GDNYVYGIIKQVKEASNGEMELNEATLYTIFKRLEKDGIISSYWGDESQ-----GGRRK 77 (116)
T ss_dssp -CHHHHHHHHHHHHHHHHHH-CCBCHHHHHHHHHHHTTTCCCCCHHHHHHHHHHHHHTTSEEEEEEC---------CCEE
T ss_pred cHHHHHhchHHHHHHHHHHh-CCCCHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHCCCEEEEeeccCC-----CCCce
Confidence 35556544 45556777765 5678899999999866445689999999999999999999986421100 12356
Q ss_pred eeeccc
Q 026766 181 CYKNVS 186 (233)
Q Consensus 181 ~Yr~~~ 186 (233)
.|+++.
T Consensus 78 ~Y~LT~ 83 (116)
T 3f8b_A 78 YYRLTE 83 (116)
T ss_dssp EEEECH
T ss_pred EEEECH
Confidence 788654
No 380
>3cuo_A Uncharacterized HTH-type transcriptional regulato; DNA-binding transcriptional regulator, structural genomics, MCSG; 2.00A {Escherichia coli K12}
Probab=57.73 E-value=29 Score=23.96 Aligned_cols=48 Identities=8% Similarity=0.025 Sum_probs=38.7
Q ss_pred HHHHHHHHhhhCCCCCHHHHHHHHHHhCCcccccCHHHHHHHHHHHhcCCeEEEEe
Q 026766 110 VKSQCLKQIIKLKVATLEGISDSIKRSGAFKVDLTKQQIEEIVRALVLDNQIMEVK 165 (233)
Q Consensus 110 l~~~~~~~i~~~~~~T~~~I~~~I~~~~i~~~~Ls~~di~~il~~Lv~Dg~ie~v~ 165 (233)
.+..++.+|...+..|..||.+.+ | ++..-|...|+.|+-.|.|+..+
T Consensus 25 ~~~~il~~l~~~~~~s~~ela~~l---~-----is~~tvs~~l~~L~~~glv~~~~ 72 (99)
T 3cuo_A 25 KRLLILCMLSGSPGTSAGELTRIT---G-----LSASATSQHLARMRDEGLIDSQR 72 (99)
T ss_dssp HHHHHHHHHTTCCSEEHHHHHHHH---C-----CCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHHHHHHHHhCCCcCHHHHHHHH---C-----cCHHHHHHHHHHHHHCCCEEEEe
Confidence 345577777776678899988876 3 67888999999999999999875
No 381
>2opo_A Polcalcin CHE A 3; calcium-binding protein, dimer, domain-swapping, EF-hand; 1.75A {Chenopodium album} SCOP: a.39.1.10 PDB: 1h4b_A
Probab=57.66 E-value=26 Score=23.30 Aligned_cols=54 Identities=11% Similarity=0.070 Sum_probs=39.6
Q ss_pred CCCHHHHHHHHHHHHHHhh-hCCCCCHHHHHHHHHHhCCcccccCHHHHHHHHHHHhcC
Q 026766 101 SLDTEFIKVVKSQCLKQII-KLKVATLEGISDSIKRSGAFKVDLTKQQIEEIVRALVLD 158 (233)
Q Consensus 101 e~D~efI~~l~~~~~~~i~-~~~~~T~~~I~~~I~~~~i~~~~Ls~~di~~il~~Lv~D 158 (233)
.+..+-++.|+.....|=. ..++.|.+|+...++..| .++.++++.+++.+=.|
T Consensus 4 ~~~~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~g----~~~~~~~~~~~~~~D~~ 58 (86)
T 2opo_A 4 EDTPQDIADRERIFKRFDTNGDGKISSSELGDALKTLG----SVTPDEVRRMMAEIDTD 58 (86)
T ss_dssp --CHHHHHHHHHHHHHHCTTCSSEEEHHHHHHHHHTTT----TCCHHHHHHHHHHHCTT
T ss_pred cCCHhhHHHHHHHHHHHCCCCCCCcCHHHHHHHHHHcC----CCCHHHHHHHHHHhCCC
Confidence 4556666777665544432 357899999999999887 68999999999987544
No 382
>3cuq_A Vacuolar-sorting protein SNF8; ESCRT, MBV, VPS, nucleus, protein transport, transc transcription regulation, transport, endosome; 2.61A {Homo sapiens} PDB: 2zme_A
Probab=57.48 E-value=19 Score=31.08 Aligned_cols=52 Identities=10% Similarity=0.136 Sum_probs=45.9
Q ss_pred CCCCChHHHHHHHHHHhhCCCcccHHHHHHHhhcCCChHHHHHHHHHHHhCCCcee
Q 026766 13 SDSLTDHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKE 68 (233)
Q Consensus 13 ~~~L~~~e~lVy~~I~~aG~~GIw~~dik~~t~~~l~~~~v~k~LK~Le~k~lIK~ 68 (233)
...|+.++..|+++++..| .+...+|+..+ +.+......+|..|+..|+.=.
T Consensus 149 p~el~~D~~~vLela~~~g--~vt~~~L~~~l--~W~~~Ra~~~L~~l~~~Gllwv 200 (234)
T 3cuq_A 149 PAELNMDHTVVLQLAEKNG--YVTVSEIKASL--KWETERARQVLEHLLKEGLAWL 200 (234)
T ss_dssp CCCCCHHHHHHHHHHTTTS--EECHHHHHHHH--TCCHHHHHHHHHHHHHHTSCEE
T ss_pred CCccchHHHHHHHHHHhcC--cCcHHHHHHHh--CCCHHHHHHHHHHHHhCCCEEE
Confidence 3469999999999997555 59999999999 9999999999999999999743
No 383
>2ijl_A AGR_C_4647P, molybdenum-binding transcriptional repressor; structural GE DNA-binding protein, PSI-2, PROT structure initiative; 2.30A {Agrobacterium tumefaciens str}
Probab=57.10 E-value=19 Score=28.13 Aligned_cols=48 Identities=13% Similarity=0.130 Sum_probs=38.5
Q ss_pred CCChHHHHHHHHHHhhCCCcccHHHHHHHhhcCCChHHHHHHHHHHHhC---CCcee
Q 026766 15 SLTDHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNK---SLIKE 68 (233)
Q Consensus 15 ~L~~~e~lVy~~I~~aG~~GIw~~dik~~t~~~l~~~~v~k~LK~Le~k---~lIK~ 68 (233)
.|+..+..++..|.+.|+ +. .-.+++ ++++..|++.|+.||+. .|+.+
T Consensus 23 ~~~~~~L~~f~av~e~gS--~s--~AA~~L--~iSqsavS~~I~~LE~~lG~~Lf~R 73 (135)
T 2ijl_A 23 RLGHGKVELMQLIAETGS--IS--AAGRAM--DMSYRRAWLLVDALNHMFRQPVICS 73 (135)
T ss_dssp EESHHHHHHHHHHHHHSC--HH--HHHHHT--TCCHHHHHHHHHHHHHHBSSCSEEE
T ss_pred cCCHHHHHHHHHHHHhCC--HH--HHHHHH--CcCHHHHHHHHHHHHHHHCCeeEEe
Confidence 356678888899999988 44 445678 99999999999999985 67755
No 384
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=56.94 E-value=14 Score=31.15 Aligned_cols=49 Identities=18% Similarity=0.135 Sum_probs=39.9
Q ss_pred CCChHHHHHHHHHHhhCCCcccHHHHHH----HhhcC--CChHHHHHHHHHHHhCCCceee
Q 026766 15 SLTDHERLIYDVIRSKQDMGIWTRDMKR----ELRVN--LPDNIVTKSIKSLQNKSLIKEV 69 (233)
Q Consensus 15 ~L~~~e~lVy~~I~~aG~~GIw~~dik~----~t~~~--l~~~~v~k~LK~Le~k~lIK~v 69 (233)
.|++.++.|+..+.. |. ...+|.+ .+ + ++...+.+.|..|++.+||...
T Consensus 287 ~l~~~~~~~l~~la~-g~---~~~~l~~~~~~~~--g~~~~~~~~~~~L~~L~~~gli~~~ 341 (357)
T 2fna_A 287 IARKRYLNIMRTLSK-CG---KWSDVKRALELEE--GIEISDSEIYNYLTQLTKHSWIIKE 341 (357)
T ss_dssp GGHHHHHHHHHHHTT-CB---CHHHHHHHHHHHH--CSCCCHHHHHHHHHHHHHTTSEEES
T ss_pred cccHHHHHHHHHHHc-CC---CHHHHHHHHHHhc--CCCCCHHHHHHHHHHHHhCCCEEec
Confidence 578888999988876 53 5677763 56 6 8999999999999999999763
No 385
>3gp4_A Transcriptional regulator, MERR family; structural genomics, DNA-BI transcription regulator, PSI-2; 1.85A {Listeria monocytogenes str}
Probab=56.90 E-value=66 Score=24.90 Aligned_cols=70 Identities=10% Similarity=0.195 Sum_probs=45.5
Q ss_pred cccHHHHHHHhhcCCChHHHHHHHHHHHhCCCceeeecccCCCeeeEEeeccccCCCcccCCcccCCCCCHHHHHHHHHH
Q 026766 34 GIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVVNIHSKGKKHLMAVEFEPSKEISGGAWYSEGSLDTEFIKVVKSQ 113 (233)
Q Consensus 34 GIw~~dik~~t~~~l~~~~v~k~LK~Le~k~lIK~vksV~~~~rK~Yml~~lePs~eiTGG~wy~d~e~D~efI~~l~~~ 113 (233)
.+.+.++.+.+ |++.++|+ .-|+.|||+++.--. .+.+.| +.+=|+.|+.+
T Consensus 2 ~~~I~e~A~~~--gvs~~tLR----~Ye~~GLl~p~~r~~-~g~R~Y----------------------~~~dl~~l~~I 52 (142)
T 3gp4_A 2 SLNIKEASEKS--GVSADTIR----YYERIGLIPPIHRNE-SGVRKF----------------------GAEDLRWILFT 52 (142)
T ss_dssp CBCHHHHHHHH--TSCHHHHH----HHHHHTSSCCCCBCT-TSCBCB----------------------CHHHHHHHHHH
T ss_pred CCcHHHHHHHH--CcCHHHHH----HHHHCCCCCCCcCCC-CCCeee----------------------CHHHHHHHHHH
Confidence 46788999999 99998876 468889996632211 233333 44555555443
Q ss_pred HHHHhhhCCCCCHHHHHHHHHH
Q 026766 114 CLKQIIKLKVATLEGISDSIKR 135 (233)
Q Consensus 114 ~~~~i~~~~~~T~~~I~~~I~~ 135 (233)
.+++.. ..|+++|.+++..
T Consensus 53 --~~lr~~-G~sL~eIk~~l~~ 71 (142)
T 3gp4_A 53 --RQMRRA-GLSIEALIDYLAL 71 (142)
T ss_dssp --HHHHHT-TCCHHHHHHHHHH
T ss_pred --HHHHHc-CCCHHHHHHHHHH
Confidence 334455 4669999999874
No 386
>1cf7_A Protein (transcription factor E2F-4); E2F, winged-helix, DNA-binding domain, cell cycle, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: a.4.5.17
Probab=56.76 E-value=26 Score=24.90 Aligned_cols=54 Identities=13% Similarity=0.079 Sum_probs=48.6
Q ss_pred CCCChHHHHHHHHHHhhCCCcccHHHHHHHhhcCC-ChHHHHHHHHHHHhCCCceee
Q 026766 14 DSLTDHERLIYDVIRSKQDMGIWTRDMKRELRVNL-PDNIVTKSIKSLQNKSLIKEV 69 (233)
Q Consensus 14 ~~L~~~e~lVy~~I~~aG~~GIw~~dik~~t~~~l-~~~~v~k~LK~Le~k~lIK~v 69 (233)
++|..--+.+.+++.++.+.-|.-.++..++ +. ..+.+--++.-||.-|||...
T Consensus 10 ~SL~~lt~kFi~l~~~~~~~~i~l~~aa~~L--~v~~kRRiYDI~NVLe~igli~K~ 64 (76)
T 1cf7_A 10 KSLGLLTTKFVSLLQEAKDGVLDLKLAADTL--AVRQKRRIYDITNVLEGIGLIEKK 64 (76)
T ss_dssp TCHHHHHHHHHHHHHHSSTTEEEHHHHHHHT--TTCCTHHHHHHHHHHHHHTSEEEE
T ss_pred CcHHHHHHHHHHHHHhCCCCcCcHHHHHHHh--CCccceehhhHHHHHhHhcceeec
Confidence 4577777788899999988889999999999 99 999999999999999999874
No 387
>1okr_A MECI, methicillin resistance regulatory protein MECI; bacterial antibiotic resistance, MECI protein, transcriptional regulatory element; 2.4A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1sax_A 1sd7_A 2d45_A 1sd6_A
Probab=56.75 E-value=19 Score=26.13 Aligned_cols=52 Identities=19% Similarity=0.206 Sum_probs=42.9
Q ss_pred HHHHHHHhhhCCCCCHHHHHHHHHHhCCcccccCHHHHHHHHHHHhcCCeEEEEee
Q 026766 111 KSQCLKQIIKLKVATLEGISDSIKRSGAFKVDLTKQQIEEIVRALVLDNQIMEVKS 166 (233)
Q Consensus 111 ~~~~~~~i~~~~~~T~~~I~~~I~~~~i~~~~Ls~~di~~il~~Lv~Dg~ie~v~~ 166 (233)
+..++.+|...+.+|..+|++.+... ..++..-|-.+|+.|+=.|.|+....
T Consensus 12 ~~~vL~~l~~~~~~t~~ela~~l~~~----~~~s~~tv~~~l~~L~~~Glv~r~~~ 63 (123)
T 1okr_A 12 EWEVMNIIWMKKYASANNIIEEIQMQ----KDWSPKTIRTLITRLYKKGFIDRKKD 63 (123)
T ss_dssp HHHHHHHHHHHSSEEHHHHHHHHHHH----CCCCHHHHHHHHHHHHHHTSEEEEEE
T ss_pred HHHHHHHHHhCCCcCHHHHHHHHhcc----CCCcHhhHHHHHHHHHHCCCeEEEec
Confidence 34567777777889999999999753 24788999999999999999998764
No 388
>2l1p_A DNA-binding protein SATB1; PSI-biology, NESG, structural genomics, protein structure in northeast structural genomics consortium; NMR {Homo sapiens} PDB: 3nzl_A*
Probab=56.71 E-value=9.7 Score=27.97 Aligned_cols=22 Identities=9% Similarity=0.309 Sum_probs=20.2
Q ss_pred cccHHHHHHHhhcCCChHHHHHHH
Q 026766 34 GIWTRDMKRELRVNLPDNIVTKSI 57 (233)
Q Consensus 34 GIw~~dik~~t~~~l~~~~v~k~L 57 (233)
||.|++|.+++ |+++.+|+.+.
T Consensus 32 GikQ~eLAK~i--GIsqsTLSaIe 53 (83)
T 2l1p_A 32 DMNQSSLAKEC--PLSQSMISSIV 53 (83)
T ss_dssp TSCHHHHHHHS--SSCHHHHHHHH
T ss_pred hcCHHHHHHHc--CCCHHHHHHHH
Confidence 99999999999 99999998754
No 389
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=56.69 E-value=33 Score=29.15 Aligned_cols=59 Identities=19% Similarity=0.156 Sum_probs=42.1
Q ss_pred CCCCChHHHHHHHHHHh--hCCCcccHHHHHHH-------hhc-CCChHHHHHHHHHHHhCCCceeeec
Q 026766 13 SDSLTDHERLIYDVIRS--KQDMGIWTRDMKRE-------LRV-NLPDNIVTKSIKSLQNKSLIKEVVN 71 (233)
Q Consensus 13 ~~~L~~~e~lVy~~I~~--aG~~GIw~~dik~~-------t~~-~l~~~~v~k~LK~Le~k~lIK~vks 71 (233)
+.+|++.++.++..|.. .|+..+..+++-+. .+. .+..+.+..+|+.|+..|+|.....
T Consensus 285 ~~~l~~~~~~~l~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~L~~~gli~~~~~ 353 (387)
T 2v1u_A 285 VRTLPLHAKLVLLSIMMLEDGGRPASTGEIYERYKELTSTLGLEHVTLRRVSGIISELDMLGIVKSRVV 353 (387)
T ss_dssp HHSSCHHHHHHHHHHHHHSSSSCCEEHHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHHTTSEEEEEE
T ss_pred HHcCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCeEEEee
Confidence 46789988888876653 26667777744333 311 3466899999999999999988653
No 390
>1yg2_A Gene activator APHA; virulence factor, winged helix, transcripti factor, transcription; 2.20A {Vibrio cholerae} SCOP: a.4.5.61
Probab=56.55 E-value=22 Score=28.35 Aligned_cols=71 Identities=13% Similarity=0.029 Sum_probs=48.8
Q ss_pred HHHHHHHHhhhCCCCCHHHHHHHHHHhCCcccccCHHHHHHHHHHHhcCCeEEEEeeCCCCCcccccCcceeeeccc
Q 026766 110 VKSQCLKQIIKLKVATLEGISDSIKRSGAFKVDLTKQQIEEIVRALVLDNQIMEVKSNGSGEFTNIPVGKVCYKNVS 186 (233)
Q Consensus 110 l~~~~~~~i~~~~~~T~~~I~~~I~~~~i~~~~Ls~~di~~il~~Lv~Dg~ie~v~~~~~g~f~~~~~g~~~Yr~~~ 186 (233)
|+-.++..|.. +..+.-||.+.+....-....++...|-..|+.|+-+|.|+....... .++.+..|+++.
T Consensus 3 l~~~iL~lL~~-~~~~gyel~~~l~~~~~~~~~~s~~~ly~~L~~Le~~GlI~~~~~~~~-----~~~~r~~Y~lT~ 73 (179)
T 1yg2_A 3 LPHVILTVLST-RDATGYDITKEFSASIGYFWKASHQQVYRELNKMGEQGLVTCVLEPQE-----GKPDRKVYSITQ 73 (179)
T ss_dssp HHHHHHHHHHH-CCBCHHHHHHHHTTGGGGTCCCCHHHHHHHHHHHHHTTSEEECCC--------------CEEECH
T ss_pred hHHHHHHHHhc-CCCCHHHHHHHHHHHhCCccCCCcCcHHHHHHHHHHCCCeEEEeecCC-----CCCCceEEEeCh
Confidence 56677888876 678999999999754322347999999999999999999987543211 123456788765
No 391
>2igp_A Retinoblastoma-associated protein HEC; calponin homology (CH) domain, alpha helices, cell cycle; 1.80A {Homo sapiens}
Probab=56.43 E-value=30 Score=26.59 Aligned_cols=59 Identities=14% Similarity=0.093 Sum_probs=38.6
Q ss_pred CCHHHHHHHHHHHHHHhhhCCC-----------CCHHH---HHHHHHHhCCcccccC----HHHHHHHHHHHhcCCe
Q 026766 102 LDTEFIKVVKSQCLKQIIKLKV-----------ATLEG---ISDSIKRSGAFKVDLT----KQQIEEIVRALVLDNQ 160 (233)
Q Consensus 102 ~D~efI~~l~~~~~~~i~~~~~-----------~T~~~---I~~~I~~~~i~~~~Ls----~~di~~il~~Lv~Dg~ 160 (233)
=|.+|+....+.+..||..+++ ||..| |.+||-+.=-.+..++ +|||-.+++.|-|=..
T Consensus 11 ~Dk~~q~~~~~~i~~fL~~~~~~~~is~k~L~~Pt~kdF~~if~fL~~~idp~~~~~~~~~eeev~~~lK~L~YP~~ 87 (120)
T 2igp_A 11 NDKAFIQQCIRQLCEFLTENGYAHNVSMKSLQAPSVKDFLKIFTFLYGFLCPSYELPDTKFEEEVPRIFKDLGYPFA 87 (120)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCSSCCCTTTTSSCCHHHHHHHHHHHHTTTCTTCCCCCTTHHHHHHHHHHHTTCCSC
T ss_pred CCHHHHHHHHHHHHHHHHHcCCCCCCCccccCCCCHHHHHHHHHHHHHhcCCCCccCCCChHHHHHHHHHHcCCCce
Confidence 3889999999999999987543 44443 4445543211123342 6778888888877664
No 392
>2ip2_A Probable phenazine-specific methyltransferase; pyocyanin, phenazine-1-carboxy PHZM; 1.80A {Pseudomonas aeruginosa}
Probab=56.03 E-value=19 Score=30.79 Aligned_cols=53 Identities=8% Similarity=0.014 Sum_probs=41.5
Q ss_pred HHHHHHHhhCCCcccHHHHHHHhhcCCChHHHHHHHHHHHhCCCceeeecccCCCeeeEEeecc
Q 026766 22 LIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVVNIHSKGKKHLMAVEF 85 (233)
Q Consensus 22 lVy~~I~~aG~~GIw~~dik~~t~~~l~~~~v~k~LK~Le~k~lIK~vksV~~~~rK~Yml~~l 85 (233)
-|+++|.+ | ++...+|..++ +++++.+.+.|+.|...|++.+.. ...|-+..+
T Consensus 32 gi~~~l~~-~--~~t~~ela~~~--~~~~~~l~r~Lr~L~~~g~l~~~~------~~~y~~t~~ 84 (334)
T 2ip2_A 32 GLADLIES-G--IDSDETLAAAV--GSDAERIHRLMRLLVAFEIFQGDT------RDGYANTPT 84 (334)
T ss_dssp THHHHHHT-T--CCSHHHHHHHH--TCCHHHHHHHHHHHHHTTSEEEET------TTEEEECHH
T ss_pred CcHHHHhC-C--CCCHHHHHHHh--CcCHHHHHHHHHHHHhCCceEecC------CCeEecCHH
Confidence 45666643 3 58999999999 999999999999999999998742 135666543
No 393
>3k69_A Putative transcription regulator; putative transcriptional regulator, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 1.95A {Lactobacillus plantarum} SCOP: a.4.5.0
Probab=55.86 E-value=23 Score=28.14 Aligned_cols=57 Identities=14% Similarity=0.146 Sum_probs=40.0
Q ss_pred CCCHHHHHHHHHHHHHHhhhCCCCCHHHHHHHHHHhCCcccccCHHHHHHHHHHHhcCCeEEEEe
Q 026766 101 SLDTEFIKVVKSQCLKQIIKLKVATLEGISDSIKRSGAFKVDLTKQQIEEIVRALVLDNQIMEVK 165 (233)
Q Consensus 101 e~D~efI~~l~~~~~~~i~~~~~~T~~~I~~~I~~~~i~~~~Ls~~di~~il~~Lv~Dg~ie~v~ 165 (233)
.+.+.|--.|+-.++--......+|.++|++.+. ++..-+++|+..|.-.|.|+.++
T Consensus 6 kis~k~~yAlr~l~~La~~~~~~~s~~~IA~~~~--------is~~~l~kil~~L~~aGlv~s~r 62 (162)
T 3k69_A 6 NMKLDFSVAVHSILYLDAHRDSKVASRELAQSLH--------LNPVMIRNILSVLHKHGYLTGTV 62 (162)
T ss_dssp -CTHHHHHHHHHHHHHHTTTTSCBCHHHHHHHHT--------SCGGGTHHHHHHHHHTTSSEEEC
T ss_pred cccHHHHHHHHHHHHHHhCCCCCcCHHHHHHHHC--------cCHHHHHHHHHHHHHCCCEEeec
Confidence 4566666666544332222345789999998663 56677899999999999998876
No 394
>3go5_A Multidomain protein with S1 RNA-binding domains; structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.40A {Streptococcus pneumoniae}
Probab=55.81 E-value=41 Score=29.42 Aligned_cols=55 Identities=16% Similarity=0.224 Sum_probs=46.8
Q ss_pred CCCCChHHHHHHHHHHhhCC-----CcccHHHHHHHhhcCCChHHHHHHHHHHHhCCCceee
Q 026766 13 SDSLTDHERLIYDVIRSKQD-----MGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEV 69 (233)
Q Consensus 13 ~~~L~~~e~lVy~~I~~aG~-----~GIw~~dik~~t~~~l~~~~v~k~LK~Le~k~lIK~v 69 (233)
...++++...|+++++++|. +=-.-.+|++.. +|+...-.|||=.|-+.++|.--
T Consensus 219 ~~~~~~~a~~il~~L~~~~G~l~~~DkS~pe~I~~~f--~~SK~~FKrAiG~L~K~~~I~~~ 278 (285)
T 3go5_A 219 FEMLENDAQMILTYLESNGGFMTLNDKSSPDDIKATF--GISKGQFKKALGGLMKAGKIKQD 278 (285)
T ss_dssp CCCCCHHHHHHHHHHHHTTTEESCCTTSCHHHHHHHH--SSCHHHHHHHHHHHHHTTCEEEE
T ss_pred hhccchHHHHHHHHHHhcCCeeccCCCCCHHHHHHHh--CcCHHHHHHHHHHHhhCCcEEEc
Confidence 45788999999999998762 234568999999 99999999999999999999753
No 395
>3hh0_A Transcriptional regulator, MERR family; protein structure initiative II(PSI II), NYSGXRC, 11183J, structural genomics; 2.67A {Bacillus cereus atcc 14579}
Probab=55.76 E-value=70 Score=24.86 Aligned_cols=41 Identities=7% Similarity=0.077 Sum_probs=29.7
Q ss_pred CcccHHHHHHHhhcCCChHHHHHHHHHHHhCCCceeeecccCCCeeeE
Q 026766 33 MGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVVNIHSKGKKHL 80 (233)
Q Consensus 33 ~GIw~~dik~~t~~~l~~~~v~k~LK~Le~k~lIK~vksV~~~~rK~Y 80 (233)
+.+.++++.+.+ |++.++|+ .-|+.|||+++.--. .+.+.|
T Consensus 3 ~~~tI~evA~~~--Gvs~~tLR----~ye~~GLl~p~~r~~-~g~R~Y 43 (146)
T 3hh0_A 3 LAWLISEFASVG--DVTVRALR----YYDKINLLKPSDYTE-GGHRLY 43 (146)
T ss_dssp CCBCHHHHHHHH--TCCHHHHH----HHHHTTSSCCSEECT-TSCEEB
T ss_pred CCCcHHHHHHHH--CcCHHHHH----HHHHCCCCCCCeECC-CCCEee
Confidence 357789999999 99998775 579999997753322 345554
No 396
>3lwf_A LIN1550 protein, putative transcriptional regulator; structural genomics, JOI for structural genomics, JCSG; HET: SO4; 2.06A {Listeria innocua}
Probab=55.75 E-value=75 Score=25.15 Aligned_cols=62 Identities=10% Similarity=0.084 Sum_probs=46.8
Q ss_pred cccCCCCCHHHHHHHHHHHHHHhhh-CCCCCHHHHHHHHHHhCCcccccCHHHHHHHHHHHhcCCeEEEEe
Q 026766 96 WYSEGSLDTEFIKVVKSQCLKQIIK-LKVATLEGISDSIKRSGAFKVDLTKQQIEEIVRALVLDNQIMEVK 165 (233)
Q Consensus 96 wy~d~e~D~efI~~l~~~~~~~i~~-~~~~T~~~I~~~I~~~~i~~~~Ls~~di~~il~~Lv~Dg~ie~v~ 165 (233)
+|..-.+.+.+--.|+-.++--... .+.+|.++|++.+ .++..-+++|+..|.--|.|+..+
T Consensus 16 ~~~~M~lS~~~~yAlr~L~~LA~~~~~~~~s~~eIA~~~--------~i~~~~l~kil~~L~~aGlv~s~r 78 (159)
T 3lwf_A 16 YFQGMKITTKGRYGLTITLELAKRIGDGPISLRSIAQDK--------NLSEHYLEQLIGPLRNAGIVKSIR 78 (159)
T ss_dssp CCCSSCCCHHHHHHHHHHHHHHHTTTSCCBCHHHHHHHH--------TCCHHHHHHHHHHHHHTTSEEEEC
T ss_pred eeeeeeCchHHHHHHHHHHHHHhcCCCCCcCHHHHHHHH--------CcCHHHHHHHHHHHHHCCeEEEec
Confidence 4566677787777776655433322 3468999998765 378899999999999999999876
No 397
>2w25_A Probable transcriptional regulatory protein; transcription regulation, mutant, RV3291C, Glu104Ala, DNA-binding; 2.15A {Mycobacterium tuberculosis} PDB: 2vbw_A* 2vbx_A* 2vby_A* 2vbz_A* 2vc0_A 2vc1_A 2w24_A 2ivm_A 2w29_A 2qz8_A
Probab=55.60 E-value=30 Score=26.36 Aligned_cols=51 Identities=14% Similarity=0.156 Sum_probs=43.2
Q ss_pred HHHHHHHHHHhhhCCCCCHHHHHHHHHHhCCcccccCHHHHHHHHHHHhcCCeEEEEee
Q 026766 108 KVVKSQCLKQIIKLKVATLEGISDSIKRSGAFKVDLTKQQIEEIVRALVLDNQIMEVKS 166 (233)
Q Consensus 108 ~~l~~~~~~~i~~~~~~T~~~I~~~I~~~~i~~~~Ls~~di~~il~~Lv~Dg~ie~v~~ 166 (233)
+.....++..|+..+..|..||++.+ .+|..-|...|+.|.-.|.|.....
T Consensus 6 d~~~~~iL~~L~~~~~~s~~ela~~l--------g~s~~tv~~~l~~L~~~G~i~~~~~ 56 (150)
T 2w25_A 6 DDIDRILVRELAADGRATLSELATRA--------GLSVSAVQSRVRRLESRGVVQGYSA 56 (150)
T ss_dssp CHHHHHHHHHHHHCTTCCHHHHHHHH--------TSCHHHHHHHHHHHHHTTSEEEEEE
T ss_pred CHHHHHHHHHHHHcCCCCHHHHHHHH--------CcCHHHHHHHHHHHHHCCCEEEEEe
Confidence 34566788889888889999999876 3788999999999999999988753
No 398
>1avs_A Troponin C; muscle contraction, calcium-activated, E-F hand calcium-binding protein; 1.75A {Gallus gallus} SCOP: a.39.1.5 PDB: 1blq_A 1skt_A 1tnp_A 1tnq_A 1zac_A 1smg_A 1npq_A 1trf_A
Probab=55.59 E-value=41 Score=22.59 Aligned_cols=55 Identities=16% Similarity=0.138 Sum_probs=41.5
Q ss_pred CCCHHHHHHHHHHHHHHhh-hCCCCCHHHHHHHHHHhCCcccccCHHHHHHHHHHHhcC
Q 026766 101 SLDTEFIKVVKSQCLKQII-KLKVATLEGISDSIKRSGAFKVDLTKQQIEEIVRALVLD 158 (233)
Q Consensus 101 e~D~efI~~l~~~~~~~i~-~~~~~T~~~I~~~I~~~~i~~~~Ls~~di~~il~~Lv~D 158 (233)
.+..+-++.++.....|=. ..+++|.+|+...++..|. .++.++++.+++.+-.|
T Consensus 13 ~l~~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~g~---~~~~~~~~~l~~~~D~~ 68 (90)
T 1avs_A 13 FLSEEMIAEFKAAFDMFDADGGGDISTKELGTVMRMLGQ---NPTKEELDAIIEEVDED 68 (90)
T ss_dssp HBCHHHHHHHHHHHHHHCTTCSSEECHHHHHHHHHHTTC---CCCHHHHHHHHHHHCTT
T ss_pred hCCHHHHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHhCC---CCCHHHHHHHHHHhCCC
Confidence 3566667777766554432 3578999999999999884 68999999999987544
No 399
>1b4a_A Arginine repressor; helix turn helix; 2.50A {Geobacillus stearothermophilus} SCOP: a.4.5.3 d.74.2.1 PDB: 1f9n_A
Probab=55.57 E-value=29 Score=27.65 Aligned_cols=56 Identities=20% Similarity=0.258 Sum_probs=44.6
Q ss_pred HHHHHHHHHHhhCCCcccHHHHHHHh---hcCCChHHHHHHHHHHHhCCCceeeecccCCCeeeEEe
Q 026766 19 HERLIYDVIRSKQDMGIWTRDMKREL---RVNLPDNIVTKSIKSLQNKSLIKEVVNIHSKGKKHLMA 82 (233)
Q Consensus 19 ~e~lVy~~I~~aG~~GIw~~dik~~t---~~~l~~~~v~k~LK~Le~k~lIK~vksV~~~~rK~Yml 82 (233)
-+..|..+|.+.+. ..+.+|...+ |.+.++.+|+|-|+.| +++|. ++ ..++.+|.+
T Consensus 6 R~~~I~~li~~~~~--~tq~eL~~~L~~~G~~VtqaTisRDL~eL---~~vKv-~~--~~g~~~Y~l 64 (149)
T 1b4a_A 6 RHIKIREIIMSNDI--ETQDELVDRLREAGFNVTQATVSRDIKEM---QLVKV-PM--ANGRYKYSL 64 (149)
T ss_dssp HHHHHHHHHHHSCC--CSHHHHHHHHHHTTCCCCHHHHHHHHHHT---TCEEE-EC--SSSCEEEEC
T ss_pred HHHHHHHHHHHCCC--ccHHHHHHHHHHcCCCcCHHHHHHHHHHc---CCeEE-EC--CCCCEEEEe
Confidence 45688899998888 9999999998 6689999999999988 55654 33 347778877
No 400
>2r3s_A Uncharacterized protein; methyltransferase domain, structural genomics, joint center structural genomics, JCSG, protein structure initiative; HET: MSE; 2.15A {Nostoc punctiforme}
Probab=55.04 E-value=15 Score=31.22 Aligned_cols=42 Identities=5% Similarity=0.002 Sum_probs=36.0
Q ss_pred HHHHHHHhhCCCcccHHHHHHHhhcCCChHHHHHHHHHHHhCCCcee
Q 026766 22 LIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKE 68 (233)
Q Consensus 22 lVy~~I~~aG~~GIw~~dik~~t~~~l~~~~v~k~LK~Le~k~lIK~ 68 (233)
-|+++|.+ ..+...+|..++ +++++.+.+.|+.|...|++.+
T Consensus 30 ~i~~~l~~---~~~t~~ela~~~--~~~~~~l~r~L~~L~~~g~l~~ 71 (335)
T 2r3s_A 30 NVFTAISQ---GIESSQSLAQKC--QTSERGMRMLCDYLVIIGFMTK 71 (335)
T ss_dssp THHHHHTT---SEECHHHHHHHH--TCCHHHHHHHHHHHHHTTSEEE
T ss_pred ChHHHHhc---CCCCHHHHHHHh--CCCchHHHHHHHHHHhcCCeEe
Confidence 35566653 358999999999 9999999999999999999975
No 401
>3b73_A PHIH1 repressor-like protein; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 2.12A {Haloarcula marismortui atcc 43049}
Probab=55.04 E-value=9.5 Score=28.95 Aligned_cols=53 Identities=9% Similarity=0.213 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHhhhCCCCCHHHHHHHHHHhCCcccccCHHHHHHHHHHHhcCCeEEEE
Q 026766 106 FIKVVKSQCLKQIIKLKVATLEGISDSIKRSGAFKVDLTKQQIEEIVRALVLDNQIMEV 164 (233)
Q Consensus 106 fI~~l~~~~~~~i~~~~~~T~~~I~~~I~~~~i~~~~Ls~~di~~il~~Lv~Dg~ie~v 164 (233)
+.+...+.++.+|.+.+..|+.+|++.+ .+.+|..-|.+-|+.|+-.|.|+..
T Consensus 10 ~md~~d~~IL~~L~~~g~~s~~eLA~~l------~~giS~~aVs~rL~~Le~~GLV~~~ 62 (111)
T 3b73_A 10 WMTIWDDRILEIIHEEGNGSPKELEDRD------EIRISKSSVSRRLKKLADHDLLQPL 62 (111)
T ss_dssp TCCHHHHHHHHHHHHHSCBCHHHHHTST------TCCSCHHHHHHHHHHHHHTTSEEEC
T ss_pred hcCHHHHHHHHHHHHcCCCCHHHHHHHH------hcCCCHHHHHHHHHHHHHCCCEEec
Confidence 3456678899999888899999998733 2368999999999999999999874
No 402
>1x19_A CRTF-related protein; methyltransferase, bacteriochllochlorophyll, BCHU, SAM, SAH, adenosylmethyonine, S-adenosylhomocysteine, ADO-Met; 2.27A {Chlorobium tepidum} PDB: 1x1a_A* 1x1b_A* 1x1c_A* 1x1d_A*
Probab=54.88 E-value=17 Score=31.68 Aligned_cols=43 Identities=5% Similarity=-0.028 Sum_probs=36.3
Q ss_pred HHHHHHHhhCCCcccHHHHHHHhhcCCChHHHHHHHHHHHhCCCceee
Q 026766 22 LIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEV 69 (233)
Q Consensus 22 lVy~~I~~aG~~GIw~~dik~~t~~~l~~~~v~k~LK~Le~k~lIK~v 69 (233)
-|+++|.+ .++...+|..++ +++++.+.+.|+.|...|++.+.
T Consensus 55 gif~~L~~---~~~t~~eLA~~~--g~~~~~l~rlLr~L~~~gll~~~ 97 (359)
T 1x19_A 55 DLFSHMAE---GPKDLATLAADT--GSVPPRLEMLLETLRQMRVINLE 97 (359)
T ss_dssp THHHHHTT---CCBCHHHHHHHH--TCCHHHHHHHHHHHHHTTSEEEE
T ss_pred CcHHHHcC---CCCCHHHHHHHh--CcChHHHHHHHHHHHhCCCeEee
Confidence 34555543 469999999999 99999999999999999999874
No 403
>3cuq_C Vacuolar protein-sorting-associated protein 25; ESCRT, MBV, VPS, nucleus, protein transport, transc transcription regulation, transport, endosome; 2.61A {Homo sapiens} PDB: 2zme_C
Probab=54.83 E-value=19 Score=29.69 Aligned_cols=52 Identities=12% Similarity=0.204 Sum_probs=39.9
Q ss_pred HHHHHHHHHhhCCCc--ccHHHHHHHh---hc---CCChHHHHHHHHHHHhCCCceeeec
Q 026766 20 ERLIYDVIRSKQDMG--IWTRDMKREL---RV---NLPDNIVTKSIKSLQNKSLIKEVVN 71 (233)
Q Consensus 20 e~lVy~~I~~aG~~G--Iw~~dik~~t---~~---~l~~~~v~k~LK~Le~k~lIK~vks 71 (233)
-.+||+.+++.|..| ++.-+|..-- +. ||+...+.|+|+.|+++|-..-+++
T Consensus 108 a~~iy~wv~~~G~~~sV~TlyEL~~Gd~t~~~ef~gld~~vL~kaL~~L~~~gKaql~~~ 167 (176)
T 3cuq_C 108 GKLIYQWVSRSGQNNSVFTLYELTNGEDTEDEEFHGLDEATLLRALQALQQEHKAEIITV 167 (176)
T ss_dssp HHHHHHHHHTTTCCSCEEEHHHHHHCTTTTTSTTTTCCHHHHHHHHHHHHHHTSEEECCT
T ss_pred HHHHHHHHHhcCCcCcEEEEeeeccCCCCCCCcccCCCHHHHHHHHHHHHHcCCeEEeec
Confidence 468999999999765 4555776541 11 7999999999999999997766553
No 404
>3bpv_A Transcriptional regulator; MARR, DNA binding, transcription factor, winged helix motif, DNA-binding; 1.40A {Methanobacterium thermoautotrophicum} PDB: 3bpx_A*
Probab=54.66 E-value=35 Score=24.73 Aligned_cols=47 Identities=17% Similarity=0.196 Sum_probs=37.7
Q ss_pred HHHHHHhhhCCCCCHHHHHHHHHHhCCcccccCHHHHHHHHHHHhcCCeEEEEee
Q 026766 112 SQCLKQIIKLKVATLEGISDSIKRSGAFKVDLTKQQIEEIVRALVLDNQIMEVKS 166 (233)
Q Consensus 112 ~~~~~~i~~~~~~T~~~I~~~I~~~~i~~~~Ls~~di~~il~~Lv~Dg~ie~v~~ 166 (233)
-.++.+|...+..|..+|++.+ .++..-|-.+|+.|+-.|.|+....
T Consensus 32 ~~iL~~l~~~~~~~~~ela~~l--------~~s~~tvs~~l~~L~~~glv~~~~~ 78 (138)
T 3bpv_A 32 VACLLRIHREPGIKQDELATFF--------HVDKGTIARTLRRLEESGFIEREQD 78 (138)
T ss_dssp HHHHHHHHHSTTCBHHHHHHHH--------TCCHHHHHHHHHHHHHTTSEEEEEE
T ss_pred HHHHHHHHHcCCCCHHHHHHHH--------CCCHHHHHHHHHHHHHCCCEEeecC
Confidence 3456666667778888888876 3678899999999999999998754
No 405
>3d5l_A Regulatory protein RECX; PSI-II, NYSGXRC, DNA repair, 10123K, structural genomi protein structure initiative; 2.35A {Lactobacillus reuteri}
Probab=54.59 E-value=38 Score=28.25 Aligned_cols=59 Identities=20% Similarity=0.206 Sum_probs=48.0
Q ss_pred cCCCCCHHHHHHHH---------HHHHHHhhhCCCCCHHHHHHHHHHhCCcccccCHHHHHHHHHHHhcCCeEE
Q 026766 98 SEGSLDTEFIKVVK---------SQCLKQIIKLKVATLEGISDSIKRSGAFKVDLTKQQIEEIVRALVLDNQIM 162 (233)
Q Consensus 98 ~d~e~D~efI~~l~---------~~~~~~i~~~~~~T~~~I~~~I~~~~i~~~~Ls~~di~~il~~Lv~Dg~ie 162 (233)
-+.++|.+.++.|. ..++.||..+ .-|..|+.+.+.+.| ++.+.|+.+|+-|.-.|.|.
T Consensus 42 kg~el~~e~~~~i~~~~~~~~a~~~Al~~Ls~r-~~S~~EL~~KL~~kg-----~~~e~i~~vl~~L~~~g~ld 109 (221)
T 3d5l_A 42 KGTELDEKQIAAIATADQQAKAYSRMLDYLSYQ-MRTESDIVKKLKEID-----TPEEFVEPILKKLRGQQLID 109 (221)
T ss_dssp TTCEECHHHHHHHHHHHHHHHHHHHHHHHHTTS-CCCHHHHHHHHHHTT-----CCHHHHHHHHHHHHHTTCCC
T ss_pred CCCCCCHHHHHHHHHhHHHHHHHHHHHHHhccc-cccHHHHHHHHHhcC-----CCHHHHHHHHHHHHHcCCCC
Confidence 45789988887765 4467777666 467999999999987 58899999999999988874
No 406
>2p5k_A Arginine repressor; DNA-binding domain, winged helix-turn-helix (WHTH), DNA binding protein; 1.00A {Bacillus subtilis} SCOP: a.4.5.3 PDB: 2p5l_C*
Probab=54.33 E-value=40 Score=21.55 Aligned_cols=44 Identities=23% Similarity=0.271 Sum_probs=32.5
Q ss_pred HHHHHHHhhCCCcccHHHHHHHh---hcCCChHHHHHHHHHHHhCCCceeeec
Q 026766 22 LIYDVIRSKQDMGIWTRDMKREL---RVNLPDNIVTKSIKSLQNKSLIKEVVN 71 (233)
Q Consensus 22 lVy~~I~~aG~~GIw~~dik~~t---~~~l~~~~v~k~LK~Le~k~lIK~vks 71 (233)
.+..++.+. ..+...+|...+ ++++..++|.|.|+.| |+| ++..
T Consensus 9 ~i~~ll~~~--~~~t~~el~~~l~~~~~~vs~~Tv~R~L~~l---g~v-~~~~ 55 (64)
T 2p5k_A 9 KIREIITSN--EIETQDELVDMLKQDGYKVTQATVSRDIKEL---HLV-KVPT 55 (64)
T ss_dssp HHHHHHHHS--CCCSHHHHHHHHHHTTCCCCHHHHHHHHHHH---TCE-EEEE
T ss_pred HHHHHHHcC--CCCCHHHHHHHHHHhCCCcCHHHHHHHHHHc---CCE-EEec
Confidence 355666554 359999999887 4489999999999944 778 5554
No 407
>1hlv_A CENP-B, major centromere autoantigen B; helix-turn-helix, protein-DNA complex, riken structural genomics/proteomics initiative, RSGI; 2.50A {Homo sapiens} SCOP: a.4.1.7 a.4.1.7 PDB: 1bw6_A
Probab=54.29 E-value=30 Score=25.54 Aligned_cols=45 Identities=20% Similarity=0.383 Sum_probs=33.1
Q ss_pred CCCChHHH-HHHHHHHhhCCCcccHHHHHHHhhcCCChHHHHHHHHHHHh
Q 026766 14 DSLTDHER-LIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQN 62 (233)
Q Consensus 14 ~~L~~~e~-lVy~~I~~aG~~GIw~~dik~~t~~~l~~~~v~k~LK~Le~ 62 (233)
+.+|.+++ .|..++++.|. ..++++.+.. +++.++|++.++.-+.
T Consensus 6 ~~~t~e~K~~iv~~~~~~g~--~~~~~~A~~~--gvs~stl~~~~~~~~~ 51 (131)
T 1hlv_A 6 RQLTFREKSRIIQEVEENPD--LRKGEIARRF--NIPPSTLSTILKNKRA 51 (131)
T ss_dssp CCCCHHHHHHHHHHHHHCTT--SCHHHHHHHH--TCCHHHHHHHHHTHHH
T ss_pred eeCCHHHHHHHHHHHHHCCC--CcHHHHHHHh--CCCHHHHHHHHhchhh
Confidence 46888876 45555554443 4556999999 9999999999987554
No 408
>1sd4_A Penicillinase repressor; BLAI, MECI, methicillin, B-lactam, DNA binding PR; 2.00A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1xsd_A
Probab=54.11 E-value=33 Score=24.91 Aligned_cols=52 Identities=17% Similarity=0.218 Sum_probs=43.4
Q ss_pred HHHHHHHhhhCCCCCHHHHHHHHHHhCCcccccCHHHHHHHHHHHhcCCeEEEEee
Q 026766 111 KSQCLKQIIKLKVATLEGISDSIKRSGAFKVDLTKQQIEEIVRALVLDNQIMEVKS 166 (233)
Q Consensus 111 ~~~~~~~i~~~~~~T~~~I~~~I~~~~i~~~~Ls~~di~~il~~Lv~Dg~ie~v~~ 166 (233)
.-.++.+|..++..|..||++.+... -.++..-|-.+|+.|+=.|.|++.+.
T Consensus 12 q~~vL~~L~~~~~~t~~el~~~l~~~----~~~~~~Tvt~~l~rLe~kGlv~R~~~ 63 (126)
T 1sd4_A 12 EWDVMNIIWDKKSVSANEIVVEIQKY----KEVSDKTIRTLITRLYKKEIIKRYKS 63 (126)
T ss_dssp HHHHHHHHHHSSSEEHHHHHHHHHTT----SCCCHHHHHHHHHHHHHTTSEEEEEE
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHhhc----CCCChhhHHHHHHHHHHCCceEEEeC
Confidence 45677888888889999999999743 14678899999999999999999764
No 409
>2rn7_A IS629 ORFA; helix, all alpha, unknown function, structural genomics, PSI-2, protein structure initiative; NMR {Shigella flexneri}
Probab=54.09 E-value=27 Score=25.08 Aligned_cols=49 Identities=4% Similarity=0.006 Sum_probs=36.2
Q ss_pred CCChHHHH-HHHHHHhhC----CCcccHHHHHHHhhcCCChHHHHHHHHHHHhCCC
Q 026766 15 SLTDHERL-IYDVIRSKQ----DMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSL 65 (233)
Q Consensus 15 ~L~~~e~l-Vy~~I~~aG----~~GIw~~dik~~t~~~l~~~~v~k~LK~Le~k~l 65 (233)
..|++.+. +...+.+.| ..|...+++..+. |++..+|.+-++.....+.
T Consensus 6 ~ys~e~K~~~v~~~~~~~~~~~s~g~s~~~va~~~--gIs~~tl~~W~~~~~~~~~ 59 (108)
T 2rn7_A 6 RFSPEVRQRAVRMVLESQGEYDSQWATICSIAPKI--GCTPETLRVWVRQHERDTG 59 (108)
T ss_dssp CCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH--TSCHHHHHHHHHHHHTTSC
T ss_pred CCCHHHHHHHHHHHHhcccccccccccHHHHHHHH--CcCHHHHHHHHHHHHhccc
Confidence 36676653 444444443 3358899999999 9999999999999887654
No 410
>3fwb_A Cell division control protein 31; gene gating, complex, cell cycle, cell division, mitosis, MR transport, nuclear pore complex, nucleus, phosphoprotein; 2.50A {Saccharomyces cerevisiae} SCOP: a.39.1.5 PDB: 2gv5_A 2doq_A 3fwc_A
Probab=53.93 E-value=41 Score=24.45 Aligned_cols=57 Identities=12% Similarity=0.090 Sum_probs=45.1
Q ss_pred CCCCCHHHHHHHHHHHHHHhh-hCCCCCHHHHHHHHHHhCCcccccCHHHHHHHHHHHhcC
Q 026766 99 EGSLDTEFIKVVKSQCLKQII-KLKVATLEGISDSIKRSGAFKVDLTKQQIEEIVRALVLD 158 (233)
Q Consensus 99 d~e~D~efI~~l~~~~~~~i~-~~~~~T~~~I~~~I~~~~i~~~~Ls~~di~~il~~Lv~D 158 (233)
...|..+-+..|++....+=. ..+.+|.+|+..+++..|. .++.++++.+++.+--|
T Consensus 14 ~~~l~~~~~~~l~~~F~~~D~~~~G~i~~~e~~~~l~~~~~---~~~~~~~~~l~~~~d~~ 71 (161)
T 3fwb_A 14 NSELLEEQKQEIYEAFSLFDMNNDGFLDYHELKVAMKALGF---ELPKREILDLIDEYDSE 71 (161)
T ss_dssp TTTSCHHHHHHHHHHHHHHCTTSSSEECHHHHHHHHHHTTC---CCCHHHHHHHHHHHCTT
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHcCC---CCCHHHHHHHHHHhCcC
Confidence 346888888888887666633 4689999999999999874 68999999999887443
No 411
>1c07_A Protein (epidermal growth factor receptor pathway substrate 15); calcium binding, signaling domain, NPF binding, FW binding, EF-hand, EH domain; NMR {Homo sapiens} SCOP: a.39.1.6
Probab=53.79 E-value=32 Score=24.08 Aligned_cols=49 Identities=10% Similarity=-0.067 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHh-hhCCCCCHHHHHHHHHHhCCcccccCHHHHHHHHHHHhcC
Q 026766 105 EFIKVVKSQCLKQI-IKLKVATLEGISDSIKRSGAFKVDLTKQQIEEIVRALVLD 158 (233)
Q Consensus 105 efI~~l~~~~~~~i-~~~~~~T~~~I~~~I~~~~i~~~~Ls~~di~~il~~Lv~D 158 (233)
+-++.++++...|= ...++.|.+|+...+++.| ++.+++++|++..=.|
T Consensus 7 ~~~~~~~~~F~~~D~d~dG~I~~~el~~~l~~~g-----~~~~~~~~i~~~~D~d 56 (95)
T 1c07_A 7 AEKAKYDEIFLKTDKDMDGFVSGLEVREIFLKTG-----LPSTLLAHIWSLCDTK 56 (95)
T ss_dssp HHHHHHHHHHHHHCTTCSSEECHHHHHHHHHTTT-----CCHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHhCCCCCCcEeHHHHHHHHHHcC-----CCHHHHHHHHHHHCCC
Confidence 44556665443332 2468899999999999876 6789999999876543
No 412
>1fp2_A Isoflavone O-methyltransferase; protein-product complex; HET: SAH HMO; 1.40A {Medicago sativa} SCOP: a.4.5.29 c.66.1.12 PDB: 1fpx_A* 2qyo_A*
Probab=53.67 E-value=22 Score=30.90 Aligned_cols=56 Identities=14% Similarity=0.195 Sum_probs=42.4
Q ss_pred HHHHHHHhhCCCcccHHHHHHHhhcCCC---hHHHHHHHHHHHhCCCceeeecccCCCeeeEEeec
Q 026766 22 LIYDVIRSKQDMGIWTRDMKRELRVNLP---DNIVTKSIKSLQNKSLIKEVVNIHSKGKKHLMAVE 84 (233)
Q Consensus 22 lVy~~I~~aG~~GIw~~dik~~t~~~l~---~~~v~k~LK~Le~k~lIK~vksV~~~~rK~Yml~~ 84 (233)
-|+.+|..+| ..+...+|..++ +++ .+.+.+.|+.|...|++++.. .+.-.|-+..
T Consensus 40 gif~~L~~~~-~~~t~~ela~~~--~~~~~~~~~l~rlLr~L~~~gll~~~~----~~~~~y~~t~ 98 (352)
T 1fp2_A 40 NIPNIIQNHG-KPISLSNLVSIL--QVPSSKIGNVRRLMRYLAHNGFFEIIT----KEEESYALTV 98 (352)
T ss_dssp THHHHHHHHT-SCEEHHHHHHHH--TCCGGGHHHHHHHHHHHHHTTSEEEEE----SSSEEEEECH
T ss_pred ChhhhhhhcC-CCccHHHHHHHh--CcCCCChHHHHHHHHHHHhCCeEEEec----CCCCeEeCCH
Confidence 4566776654 269999999999 995 779999999999999998852 1123565554
No 413
>2p5v_A Transcriptional regulator, LRP/ASNC family; NMB0573, structu genomics; 1.99A {Neisseria meningitidis} PDB: 2p6s_A 2p6t_A
Probab=53.64 E-value=32 Score=26.56 Aligned_cols=50 Identities=10% Similarity=0.041 Sum_probs=42.5
Q ss_pred HHHHHHHHHHhhhCCCCCHHHHHHHHHHhCCcccccCHHHHHHHHHHHhcCCeEEEEe
Q 026766 108 KVVKSQCLKQIIKLKVATLEGISDSIKRSGAFKVDLTKQQIEEIVRALVLDNQIMEVK 165 (233)
Q Consensus 108 ~~l~~~~~~~i~~~~~~T~~~I~~~I~~~~i~~~~Ls~~di~~il~~Lv~Dg~ie~v~ 165 (233)
+.....++..|+..+..|..||++.+ | +|..-|...|+.|.-.|.|....
T Consensus 9 d~~~~~il~~L~~~~~~s~~ela~~l---g-----~s~~tv~~~l~~L~~~G~i~~~~ 58 (162)
T 2p5v_A 9 DKTDIKILQVLQENGRLTNVELSERV---A-----LSPSPCLRRLKQLEDAGIVRQYA 58 (162)
T ss_dssp CHHHHHHHHHHHHCTTCCHHHHHHHH---T-----SCHHHHHHHHHHHHHTTSEEEEE
T ss_pred CHHHHHHHHHHHHcCCCCHHHHHHHH---C-----cCHHHHHHHHHHHHHCCCEeeec
Confidence 34566788899888889999999866 3 78899999999999999999765
No 414
>3l4g_A Phenylalanyl-tRNA synthetase alpha chain; aminoacylation, tRNA-binding, DNA-binding domain, four-helix acetylation, aminoacyl-tRNA synthetase; HET: PHE; 3.30A {Homo sapiens}
Probab=53.50 E-value=2.8 Score=40.20 Aligned_cols=50 Identities=20% Similarity=0.350 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhhCCCcccHHHHHHHhhcCCChHHHHHHHHHHHhCC-Cceeeec
Q 026766 19 HERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKS-LIKEVVN 71 (233)
Q Consensus 19 ~e~lVy~~I~~aG~~GIw~~dik~~t~~~l~~~~v~k~LK~Le~k~-lIK~vks 71 (233)
-+..|+..+++.+. .+.+.+|..++ +++...|..+++.|+++| ||+-...
T Consensus 6 ~~~~iL~~l~~~~~-~~~~~~~a~~~--~~~~~~v~~~~~~L~~~~~~v~~~~~ 56 (508)
T 3l4g_A 6 VAELLLRRLEASDG-GLDSAELAAEL--GMEHQAVVGAVKSLQALGEVIEAELR 56 (508)
T ss_dssp ------------------------------------------------------
T ss_pred HHHHHHHHHHhcCC-CcCHHHHHHHc--CCCHHHHHHHHHHHHhCCCeEEEEEE
Confidence 46778888876552 37889999999 999999999999999998 9875443
No 415
>1ylf_A RRF2 family protein; structural genomics, transcription regulator, P protein structure initiative; 2.50A {Bacillus cereus atcc 14579} SCOP: a.4.5.55
Probab=52.79 E-value=44 Score=25.75 Aligned_cols=57 Identities=12% Similarity=0.135 Sum_probs=37.9
Q ss_pred CCHHHHHHHHHHHHHHhhhCCCCCHHHHHHHHHHhCCcccccCHHHHHHHHHHHhcCCeEEEEee
Q 026766 102 LDTEFIKVVKSQCLKQIIKLKVATLEGISDSIKRSGAFKVDLTKQQIEEIVRALVLDNQIMEVKS 166 (233)
Q Consensus 102 ~D~efI~~l~~~~~~~i~~~~~~T~~~I~~~I~~~~i~~~~Ls~~di~~il~~Lv~Dg~ie~v~~ 166 (233)
+.+.|-..|+-.++-.....+.+|.++|++.+ .++..-+++|+..|+-.|.|+.++.
T Consensus 9 ls~~~~yAl~~L~~La~~~~~~~~~~~iA~~~--------~i~~~~l~kil~~L~~~Glv~s~rG 65 (149)
T 1ylf_A 9 ISSRFSIAVHILSILKNNPSSLCTSDYMAESV--------NTNPVVIRKIMSYLKQAGFVYVNRG 65 (149)
T ss_dssp CCHHHHHHHHHHHHHHHSCGGGCCHHHHHHHH--------TSCHHHHHHHHHHHHHTTSEEEC--
T ss_pred CChHHHHHHHHHHHHHhCCCCCcCHHHHHHHH--------CcCHHHHHHHHHHHHHCCcEEEccC
Confidence 34444444443332222223468999998865 3788999999999999999998763
No 416
>4a6d_A Hydroxyindole O-methyltransferase; melatonin, circadian clock; HET: SAM; 2.40A {Homo sapiens} PDB: 4a6e_A*
Probab=52.47 E-value=28 Score=30.55 Aligned_cols=59 Identities=12% Similarity=0.067 Sum_probs=45.0
Q ss_pred HHHHHHHHHhhCCCcccHHHHHHHhhcCCChHHHHHHHHHHHhCCCceeeecccCCCeeeEEeec
Q 026766 20 ERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVVNIHSKGKKHLMAVE 84 (233)
Q Consensus 20 e~lVy~~I~~aG~~GIw~~dik~~t~~~l~~~~v~k~LK~Le~k~lIK~vksV~~~~rK~Yml~~ 84 (233)
|--|+++|.++ ..++...+|..++ ++++..+.+.|+.|...|+++.... .+.-.|-+..
T Consensus 30 eLglfd~L~~~-~~p~t~~eLA~~~--g~~~~~l~rlLr~L~~~gll~~~~~---~~~~~y~~t~ 88 (353)
T 4a6d_A 30 ELGVFDLLAEA-PGPLDVAAVAAGV--RASAHGTELLLDICVSLKLLKVETR---GGKAFYRNTE 88 (353)
T ss_dssp HHTHHHHHHHS-SSCBCHHHHHHHH--TCCHHHHHHHHHHHHHTTSEEEEEE---TTEEEEEECH
T ss_pred HcCHHHHHhcC-CCCCCHHHHHHhh--CcCHHHHHHHHHHHHHCCCEEEecc---CccceeeCCH
Confidence 34467777664 3479999999999 9999999999999999999976432 2344565543
No 417
>3cuq_B Vacuolar protein-sorting-associated protein 36; ESCRT, MBV, VPS, nucleus, protein transport, transc transcription regulation, transport, endosome; 2.61A {Homo sapiens} PDB: 2zme_B
Probab=52.27 E-value=30 Score=29.15 Aligned_cols=54 Identities=2% Similarity=0.038 Sum_probs=46.0
Q ss_pred CCChHHHHHHHHHHhhCCCcccHHHHHHHhhcCCChHHHHHHHHHHHhCCCceeeecc
Q 026766 15 SLTDHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVVNI 72 (233)
Q Consensus 15 ~L~~~e~lVy~~I~~aG~~GIw~~dik~~t~~~l~~~~v~k~LK~Le~k~lIK~vksV 72 (233)
.++..+..|+++++..| |+...+|..+. +.+.....-.|..+|..|++=.=.++
T Consensus 151 ~~~~~~~~il~~~~~~g--~vt~~~la~~l--~ws~~~a~e~L~~~e~~G~l~~D~~~ 204 (218)
T 3cuq_B 151 KEEEMVASALETVSEKG--SLTSEEFAKLV--GMSVLLAKERLLLAEKMGHLCRDDSV 204 (218)
T ss_dssp CGGGGHHHHHHHHHHTS--CBCHHHHHHHH--TCCHHHHHHHHHHHHHTTSEEEEESS
T ss_pred chHHHHHHHHHHHHHCC--CcCHHHHHHHh--CCCHHHHHHHHHHHHHcCCEEEECCC
Confidence 45567888999988755 79999999999 99999999999999999999664433
No 418
>2pmy_A RAS and EF-hand domain-containing protein; rasef, calcium-binding domain, structural genomics, structural genomics consortium, SGC; 2.30A {Homo sapiens}
Probab=52.11 E-value=24 Score=24.20 Aligned_cols=54 Identities=13% Similarity=0.008 Sum_probs=41.2
Q ss_pred CCCCHHHHHHHHHHHHHHhh-hCCCCCHHHHHHHHHHhCCcccccCHHHHHHHHHHHhcC
Q 026766 100 GSLDTEFIKVVKSQCLKQII-KLKVATLEGISDSIKRSGAFKVDLTKQQIEEIVRALVLD 158 (233)
Q Consensus 100 ~e~D~efI~~l~~~~~~~i~-~~~~~T~~~I~~~I~~~~i~~~~Ls~~di~~il~~Lv~D 158 (233)
..+..+.++.|++....|=. ..++++.+|+...++..| ++.++++.+++.+-.|
T Consensus 19 ~~l~~~~~~~l~~~F~~~D~d~~G~I~~~El~~~l~~~g-----~~~~~~~~~~~~~D~d 73 (91)
T 2pmy_A 19 ADGDGEELARLRSVFAACDANRSGRLEREEFRALCTELR-----VRPADAEAVFQRLDAD 73 (91)
T ss_dssp CHHHHHHHHHHHHHHHHHCTTCSSSEEHHHHHHHHHHTT-----CCHHHHHHHHHHHCTT
T ss_pred ccCCHHHHHHHHHHHHHHCCCCCCCCcHHHHHHHHHHcC-----cCHHHHHHHHHHhCCC
Confidence 45667777777776554433 357899999999999887 6889999999987544
No 419
>2ktg_A Calmodulin, putative; ehcam, Ca-binding protein, partially structured protein, CAM-like; NMR {Entamoeba histolytica} PDB: 2lc5_A
Probab=51.84 E-value=34 Score=22.55 Aligned_cols=55 Identities=27% Similarity=0.182 Sum_probs=41.6
Q ss_pred CCCHHHHHHHHHHHHHHhh-hCCCCCHHHHHHHHHHhCCcccccCHHHHHHHHHHHhcC
Q 026766 101 SLDTEFIKVVKSQCLKQII-KLKVATLEGISDSIKRSGAFKVDLTKQQIEEIVRALVLD 158 (233)
Q Consensus 101 e~D~efI~~l~~~~~~~i~-~~~~~T~~~I~~~I~~~~i~~~~Ls~~di~~il~~Lv~D 158 (233)
+|..+-++.+++....|=. ..++.+.+|+...++..|. .++.++++.+++.+-.|
T Consensus 7 ~l~~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~g~---~~~~~~~~~~~~~~d~~ 62 (85)
T 2ktg_A 7 VLTAEEQQEYKEAFQLFDKDNDNKLTAEELGTVMRALGA---NPTKQKISEIVKDYDKD 62 (85)
T ss_dssp SSSHHHHHHHHHHHHHTCTTCCSEEEHHHHHHHHHTTSS---CCCHHHHHHHHHHHSSS
T ss_pred hCCHHHHHHHHHHHHHHCCCCCCcCcHHHHHHHHHHhCC---CCCHHHHHHHHHHhCCC
Confidence 5667777777765544422 3578999999999998874 68999999999987544
No 420
>2f2e_A PA1607; transcription factor, helix-TRUN-helix, APC5613, structural genomics, PSI, protein structure initiative; HET: GLC; 1.85A {Pseudomonas aeruginosa} SCOP: a.4.5.69
Probab=51.78 E-value=79 Score=24.22 Aligned_cols=96 Identities=15% Similarity=0.215 Sum_probs=60.9
Q ss_pred HHHHHhhhCCCCCHHHHHHHHHHhCCcccccCHHHHHHHHHHHhcCCeEEEEeeCCCCCcccccCcceeeecccCCCC--
Q 026766 113 QCLKQIIKLKVATLEGISDSIKRSGAFKVDLTKQQIEEIVRALVLDNQIMEVKSNGSGEFTNIPVGKVCYKNVSKGGG-- 190 (233)
Q Consensus 113 ~~~~~i~~~~~~T~~~I~~~I~~~~i~~~~Ls~~di~~il~~Lv~Dg~ie~v~~~~~g~f~~~~~g~~~Yr~~~~~~~-- 190 (233)
.++..|. .+..+..||.+.+ | ++..-+-+.|+.|+-+|.|++...... . +..|+++.++..
T Consensus 28 ~IL~~L~-~g~~~~~eLa~~l---g-----is~~tls~~L~~Le~~GlI~r~~~~~d-------~-~~~y~LT~~G~~l~ 90 (146)
T 2f2e_A 28 LIVRDAF-EGLTRFGEFQKSL---G-----LAKNILAARLRNLVEHGVMVAVPAESG-------S-HQEYRLTDKGRALF 90 (146)
T ss_dssp HHHHHHH-TTCCSHHHHHHHH---C-----CCHHHHHHHHHHHHHTTSEEEEECSSS-------S-CEEEEECHHHHTTH
T ss_pred HHHHHHH-hCCCCHHHHHHHh---C-----CCHHHHHHHHHHHHHCCCEEEEecCCC-------C-eEEEEECchHHHHH
Confidence 3555564 5678999998876 5 566677788999999999998753221 2 356776653210
Q ss_pred ---------------CCCCCCCCCCCCCCCCCCcc--ccCCC-CCccCcccccc
Q 026766 191 ---------------GGEPKTGSLASIPCGVCPQI--NICKP-DGVISPKTCVY 226 (233)
Q Consensus 191 ---------------~~~p~~~~l~~vPCg~CPv~--~~C~~-~G~IsP~~C~Y 226 (233)
........+...+||. |+- -.|.. |.+|+|....+
T Consensus 91 ~~l~~l~~w~~~~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~g~~~~~~~~~~ 143 (146)
T 2f2e_A 91 PLLVAIRQWGEDYFFAPDESHVRLVERDSGQ-PVPRLQVRAGDGSPLAAEDTRV 143 (146)
T ss_dssp HHHHHHHHHHHHHSSCTTCCCCEEEETTTCC-BCCCCCCBCTTSCBCCGGGEEE
T ss_pred HHHHHHHHHHHHhhccccCCcceeeeCCCCC-CCCceEEECCCcCCCCHHHeee
Confidence 0111123467889983 443 45665 56788887654
No 421
>4ds7_A Calmodulin, CAM; protein binding, metal binding, structura; 2.15A {Kluyveromyces lactis} PDB: 1lkj_A 2lhh_A 1f54_A 1f55_A
Probab=51.74 E-value=61 Score=22.98 Aligned_cols=105 Identities=12% Similarity=0.282 Sum_probs=66.7
Q ss_pred CCChHHH----HHHHHHHhhCCCcccHHHHHHHh---hcCCChHHHHHHHHHHHhCCCceeeecccCCCeeeEEeecccc
Q 026766 15 SLTDHER----LIYDVIRSKQDMGIWTRDMKREL---RVNLPDNIVTKSIKSLQNKSLIKEVVNIHSKGKKHLMAVEFEP 87 (233)
Q Consensus 15 ~L~~~e~----lVy~~I~~aG~~GIw~~dik~~t---~~~l~~~~v~k~LK~Le~k~lIK~vksV~~~~rK~Yml~~leP 87 (233)
.|++++. .++..+...|+--|...+++.-+ +.+++...+...++.+-..+
T Consensus 4 ~l~~~~~~~l~~~F~~~D~~~~G~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~d~~~----------------------- 60 (147)
T 4ds7_A 4 NLTEEQIAEFKEAFALFDKDNSGSISASELATVMRSLGLSPSEAEVADLMNEIDVDG----------------------- 60 (147)
T ss_dssp CCCHHHHHHHHHHHHHHCTTCSSEEEHHHHHHHHHHTTCCCCHHHHHHHHHHHCTTS-----------------------
T ss_pred cCCHHHHHHHHHHHHHHCCCCCCCcCHHHHHHHHHHhCCCCCHHHHHHHHHHhccCC-----------------------
Confidence 4666543 34555556677678899988665 23566667777776652110
Q ss_pred CCCcccCCcccCCCCC-HHHHHHHHHH------------HHHHh--hhCCCCCHHHHHHHHHHhCCcccccCHHHHHHHH
Q 026766 88 SKEISGGAWYSEGSLD-TEFIKVVKSQ------------CLKQI--IKLKVATLEGISDSIKRSGAFKVDLTKQQIEEIV 152 (233)
Q Consensus 88 s~eiTGG~wy~d~e~D-~efI~~l~~~------------~~~~i--~~~~~~T~~~I~~~I~~~~i~~~~Ls~~di~~il 152 (233)
+|.++ .||+..+... +++.+ ...+++|.+|+.++++..|. .++.++++.++
T Consensus 61 -----------~g~i~~~ef~~~~~~~~~~~~~~~~~~~~F~~~D~d~~G~i~~~e~~~~l~~~~~---~~~~~~~~~~~ 126 (147)
T 4ds7_A 61 -----------NHAIEFSEFLALMSRQLKCNDSEQELLEAFKVFDKNGDGLISAAELKHVLTSIGE---KLTDAEVDEML 126 (147)
T ss_dssp -----------SSEEEHHHHHHHHHHHHHTHHHHHHHHHHHHHHCTTCSSEECHHHHHHHHHHTTC---CCCHHHHHHHH
T ss_pred -----------CCcCcHHHHHHHHHHhccCCCcHHHHHHHHHHhCCCCCCeECHHHHHHHHHHcCC---CCCHHHHHHHH
Confidence 22222 2455444322 12222 13589999999999998873 69999999999
Q ss_pred HHHh
Q 026766 153 RALV 156 (233)
Q Consensus 153 ~~Lv 156 (233)
+.+-
T Consensus 127 ~~~d 130 (147)
T 4ds7_A 127 REVS 130 (147)
T ss_dssp HHHS
T ss_pred HHhc
Confidence 9874
No 422
>1y0u_A Arsenical resistance operon repressor, putative; structural genomics, protein structure initiative, PSI; HET: MSE; 1.60A {Archaeoglobus fulgidus} SCOP: a.4.5.5
Probab=51.70 E-value=31 Score=24.27 Aligned_cols=46 Identities=24% Similarity=0.278 Sum_probs=36.0
Q ss_pred HHHHHHHHhhhCCCCCHHHHHHHHHHhCCcccccCHHHHHHHHHHHhcCCeEEEEe
Q 026766 110 VKSQCLKQIIKLKVATLEGISDSIKRSGAFKVDLTKQQIEEIVRALVLDNQIMEVK 165 (233)
Q Consensus 110 l~~~~~~~i~~~~~~T~~~I~~~I~~~~i~~~~Ls~~di~~il~~Lv~Dg~ie~v~ 165 (233)
.+..++.+| .+..|+.||++.+ .+|..-|...|+.|+-.|.|+...
T Consensus 32 ~r~~Il~~L--~~~~~~~eLa~~l--------~is~~tv~~~L~~L~~~Glv~~~~ 77 (96)
T 1y0u_A 32 VRRKILRML--DKGRSEEEIMQTL--------SLSKKQLDYHLKVLEAGFCIERVG 77 (96)
T ss_dssp HHHHHHHHH--HTTCCHHHHHHHH--------TCCHHHHHHHHHHHHHTTSEEEET
T ss_pred HHHHHHHHH--cCCCCHHHHHHHH--------CcCHHHHHHHHHHHHHCCCEEEEC
Confidence 345677777 4568888888766 377888999999999999998754
No 423
>3mcz_A O-methyltransferase; adomet_mtases, S-adenosylmethionine-dependent methyltransfer structural genomics, PSI-2; HET: MSE; 1.90A {Burkholderia thailandensis}
Probab=51.57 E-value=16 Score=31.56 Aligned_cols=34 Identities=9% Similarity=0.170 Sum_probs=32.5
Q ss_pred cccHHHHHHHhhcCCChHHHHHHHHHHHhCCCceee
Q 026766 34 GIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEV 69 (233)
Q Consensus 34 GIw~~dik~~t~~~l~~~~v~k~LK~Le~k~lIK~v 69 (233)
++...+|..++ +++.+.+.+.|..|...|++.+.
T Consensus 56 ~~t~~elA~~~--~~~~~~l~rlLr~L~~~gll~~~ 89 (352)
T 3mcz_A 56 GRTPAEVAASF--GMVEGKAAILLHALAALGLLTKE 89 (352)
T ss_dssp CBCHHHHHHHH--TCCHHHHHHHHHHHHHTTSEEEE
T ss_pred CCCHHHHHHHh--CcChHHHHHHHHHHHHCCCeEec
Confidence 89999999999 99999999999999999999874
No 424
>2l01_A Uncharacterized protein; structural genomics, northeast structural genomics consortiu PSI-2, protein structure initiative; NMR {Bacteroides vulgatus}
Probab=51.24 E-value=35 Score=24.61 Aligned_cols=59 Identities=12% Similarity=0.224 Sum_probs=47.0
Q ss_pred HHHHHHHHHhhCCCcccHHHHHHHhhcCC-ChHHHHHHHHHHHhCCCceeeecccCCCeeeEEeeccc
Q 026766 20 ERLIYDVIRSKQDMGIWTRDMKRELRVNL-PDNIVTKSIKSLQNKSLIKEVVNIHSKGKKHLMAVEFE 86 (233)
Q Consensus 20 e~lVy~~I~~aG~~GIw~~dik~~t~~~l-~~~~v~k~LK~Le~k~lIK~vksV~~~~rK~Yml~~le 86 (233)
.-.||+++.+.| .+..++|++.+ +| ++..+.-+|==|-..+-|.- ...++-+|+--+|+
T Consensus 12 AG~VW~~L~~~~--~~s~~el~k~t--~l~~d~el~lAiGWLaREdKI~~----~~~~~~l~v~l~~~ 71 (77)
T 2l01_A 12 AGQIWEALNGTE--GLTQKQIKKAT--KLKADKDFFLGLGWLLREDKVVT----SEVEGEIFVKLVLE 71 (77)
T ss_dssp HHHHHHHHTTSS--CEEHHHHHHHH--TCSCHHHHHHHHHHHHHTTCEEE----EEETTEEEEEECSS
T ss_pred HHHHHHHHhcCC--CCCHHHHHHHH--CCCCHHHHHHHHHHHhhcCceEE----EeeCCEEEEEeecc
Confidence 347999999864 69999999999 99 99999999999998887743 22456677666555
No 425
>1zg3_A Isoflavanone 4'-O-methyltransferase; rossman fold, plant Pro transferase; HET: 2HI SAH; 2.35A {Medicago truncatula} PDB: 1zga_A* 1zhf_A* 1zgj_A*
Probab=51.03 E-value=24 Score=30.73 Aligned_cols=47 Identities=19% Similarity=0.260 Sum_probs=38.9
Q ss_pred HHHHHHHHHhhCCCcccHHHHHHHhhcCC---ChHHHHHHHHHHHhCCCceee
Q 026766 20 ERLIYDVIRSKQDMGIWTRDMKRELRVNL---PDNIVTKSIKSLQNKSLIKEV 69 (233)
Q Consensus 20 e~lVy~~I~~aG~~GIw~~dik~~t~~~l---~~~~v~k~LK~Le~k~lIK~v 69 (233)
+.-|+++|..+| ..+...+|..++ ++ ..+.+.|.|+.|...|++.+.
T Consensus 32 ~lgif~~L~~~~-~~~t~~eLA~~~--g~~~~~~~~l~rlLr~L~~~gll~~~ 81 (358)
T 1zg3_A 32 ELGIADAIHNHG-KPMTLSELASSL--KLHPSKVNILHRFLRLLTHNGFFAKT 81 (358)
T ss_dssp HHTHHHHHHHHT-SCEEHHHHHHHT--TCCTTTHHHHHHHHHHHHHTTSEEEE
T ss_pred HCChHhHHhhcC-CCcCHHHHHHhc--CCCCcchHHHHHHHHHHhhCCcEEEe
Confidence 344677777653 259999999999 99 488999999999999999885
No 426
>2ve8_A FTSK, DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA-binding, winged helix, bacterial cell division; HET: DNA; 1.4A {Pseudomonas aeruginosa} SCOP: a.4.5.67 PDB: 2ve9_A* 2j5o_A*
Probab=51.02 E-value=38 Score=24.12 Aligned_cols=54 Identities=7% Similarity=0.169 Sum_probs=44.0
Q ss_pred HHHHHHHhhCCCcccHHHHHHHhhcCCChHHHHHHHHHHHhCCCceeeecccCCCeeeEE
Q 026766 22 LIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVVNIHSKGKKHLM 81 (233)
Q Consensus 22 lVy~~I~~aG~~GIw~~dik~~t~~~l~~~~v~k~LK~Le~k~lIK~vksV~~~~rK~Ym 81 (233)
.+..+|-+.+. ..+.-|.+++ .+--+.-.+++-+||..|+|-+... ++.|++++
T Consensus 14 ~A~~~V~~~~~--aS~S~lQR~l--rIGYnRAArlid~lE~~GiVgp~~g--sk~ReVL~ 67 (73)
T 2ve8_A 14 EAVRFVTESRR--ASISAVQRKL--KIGYNRAARMIEAMEMAGVVTPMNT--NGSREVIA 67 (73)
T ss_dssp HHHHHHHHHCC--CCHHHHHHHH--TCCHHHHHHHHHHHHHTTSBCCCCT--TSCCCBCS
T ss_pred HHHHHHHhcCC--ccHHHHHHHH--ccChHHHHHHHHHHHHCCcCCcccC--CCCceEeC
Confidence 45567777777 8899999999 9999999999999999999976543 34677764
No 427
>1tbx_A ORF F-93, hypothetical 11.0 kDa protein; sulfolobus spindle virus, winged helix, fusellovirus; 2.70A {Sulfolobus virus 1} SCOP: a.4.5.48
Probab=50.93 E-value=58 Score=22.64 Aligned_cols=51 Identities=6% Similarity=0.094 Sum_probs=40.2
Q ss_pred HHHHHHhhhCCCCCHHHHHHHHHHhCCcccccCHHHHHHHHHHHhcCCeEEEEee
Q 026766 112 SQCLKQIIKLKVATLEGISDSIKRSGAFKVDLTKQQIEEIVRALVLDNQIMEVKS 166 (233)
Q Consensus 112 ~~~~~~i~~~~~~T~~~I~~~I~~~~i~~~~Ls~~di~~il~~Lv~Dg~ie~v~~ 166 (233)
-.++.+|...+..|..+|.+.+.+ ...++..-|-.+|+.|+-.|.|++...
T Consensus 11 ~~iL~~l~~~~~~~~~el~~~la~----~l~is~~tvs~~l~~Le~~gli~r~~~ 61 (99)
T 1tbx_A 11 AIVLAYLYDNEGIATYDLYKKVNA----EFPMSTATFYDAKKFLIQEGFVKERQE 61 (99)
T ss_dssp HHHHHHHTTCTTCBHHHHHHHHHT----TSCCCHHHHHHHHHHHHHTTSEEEEEE
T ss_pred HHHHHHHHHcCCcCHHHHHHHHHH----HcCCCHHHHHHHHHHHHHCCCEEEEec
Confidence 356777777888999999776632 234788889999999999999998753
No 428
>3ri2_A Transcriptional regulator, PADR-like family; PSI-biology, midwest center for structural genomics, MCSG, transcription regulator; 2.10A {Eggerthella lenta} PDB: 4ejo_A
Probab=50.88 E-value=60 Score=24.60 Aligned_cols=66 Identities=15% Similarity=0.209 Sum_probs=49.6
Q ss_pred HHHHHHHHhhhCCCCCHHHHHHHHHHhCCcccccCHHHHHHHHHHHhcCCeEEEEeeCCCCCcccccCcceeeeccc
Q 026766 110 VKSQCLKQIIKLKVATLEGISDSIKRSGAFKVDLTKQQIEEIVRALVLDNQIMEVKSNGSGEFTNIPVGKVCYKNVS 186 (233)
Q Consensus 110 l~~~~~~~i~~~~~~T~~~I~~~I~~~~i~~~~Ls~~di~~il~~Lv~Dg~ie~v~~~~~g~f~~~~~g~~~Yr~~~ 186 (233)
|.-.++..|. +..+--+|.+.|.+.+ ..++..-|-.+|+.|+-+|.|+.......+ +.+..|+++.
T Consensus 22 l~~~IL~lL~--~p~~GYei~~~l~~~~---~~is~gtlY~~L~rLe~~GlI~~~~~~~~~------~~rk~Y~LT~ 87 (123)
T 3ri2_A 22 LVMLVLSQLR--EPAYGYALVKSLADHG---IPIEANTLYPLMRRLESQGLLASEWDNGGS------KPRKYYRTTD 87 (123)
T ss_dssp HHHHHHHHTT--SCEEHHHHHHHHHHTT---CCCCHHHHHHHHHHHHHTTSEEEEEEECSS------CEEEEEEECH
T ss_pred HHHHHHHHHc--CCCCHHHHHHHHHHhC---CCCCcchHHHHHHHHHHCCCEEEEeccCCC------CCceEEEECH
Confidence 4444666666 5678889999999876 689999999999999999999976432111 2356788754
No 429
>3isp_A HTH-type transcriptional regulator RV1985C/MT2039; ROD shaped structure, DNA binding domain, regulatory domain, DNA-binding; 2.70A {Mycobacterium tuberculosis}
Probab=50.57 E-value=19 Score=29.50 Aligned_cols=48 Identities=17% Similarity=0.211 Sum_probs=36.8
Q ss_pred CCChHHHHHHHHHHhhCCCcccHHHHHHHhhcCCChHHHHHHHHHHHh---CCCcee
Q 026766 15 SLTDHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQN---KSLIKE 68 (233)
Q Consensus 15 ~L~~~e~lVy~~I~~aG~~GIw~~dik~~t~~~l~~~~v~k~LK~Le~---k~lIK~ 68 (233)
.|+-.+-.++..|.+.|+ +.. =.+++ +++|..|++.|++||+ -.|..+
T Consensus 5 ~m~l~~L~~f~~v~~~gs--~s~--AA~~L--~isq~avS~~i~~LE~~lg~~Lf~R 55 (303)
T 3isp_A 5 QLDGPQLAALAAVVELGS--FDA--AAERL--HVTPSAVSQRIKSLEQQVGQVLVVR 55 (303)
T ss_dssp CCCSHHHHHHHHHHHHTC--HHH--HHTTT--TCCHHHHHHHHHHHHHHHTSCCEEC
T ss_pred CCCHHHHHHHHHHHHcCC--HHH--HHHHh--CCChHHHHHHHHHHHHHhCCeeEEc
Confidence 466678888888988888 332 24556 9999999999999996 456644
No 430
>3jth_A Transcription activator HLYU; transcription factor, RTXA, DNA-binding, transcription regulation; 2.00A {Vibrio vulnificus}
Probab=50.34 E-value=47 Score=23.16 Aligned_cols=46 Identities=13% Similarity=0.164 Sum_probs=36.7
Q ss_pred HHHHHHHhhhCCCCCHHHHHHHHHHhCCcccccCHHHHHHHHHHHhcCCeEEEEe
Q 026766 111 KSQCLKQIIKLKVATLEGISDSIKRSGAFKVDLTKQQIEEIVRALVLDNQIMEVK 165 (233)
Q Consensus 111 ~~~~~~~i~~~~~~T~~~I~~~I~~~~i~~~~Ls~~di~~il~~Lv~Dg~ie~v~ 165 (233)
+..++.+|.+ +..|+.||++.+ | +|..-|..-|+.|.-.|.|+..+
T Consensus 25 r~~Il~~L~~-~~~~~~ela~~l---~-----is~~tvs~~L~~L~~~Glv~~~~ 70 (98)
T 3jth_A 25 RLQILCMLHN-QELSVGELCAKL---Q-----LSQSALSQHLAWLRRDGLVTTRK 70 (98)
T ss_dssp HHHHHHHTTT-SCEEHHHHHHHH---T-----CCHHHHHHHHHHHHHTTSEEEEC
T ss_pred HHHHHHHHhc-CCCCHHHHHHHH---C-----cCHHHHHHHHHHHHHCCCeEEEE
Confidence 4457777766 778899988877 4 56778889999999999998764
No 431
>3dtp_E RLC, myosin regulatory light chain; muscle protein, smooth muscle, myosin subfragment 2, heavy meromyosin, essential light chain; 20.00A {Avicularia avicularia}
Probab=49.82 E-value=14 Score=29.01 Aligned_cols=57 Identities=14% Similarity=0.089 Sum_probs=43.9
Q ss_pred CCCCHHHHHHHHHHHHHHh-hhCCCCCHHHHHHHHHHhCCcccccCHHHHHHHHHHHhcCCeE
Q 026766 100 GSLDTEFIKVVKSQCLKQI-IKLKVATLEGISDSIKRSGAFKVDLTKQQIEEIVRALVLDNQI 161 (233)
Q Consensus 100 ~e~D~efI~~l~~~~~~~i-~~~~~~T~~~I~~~I~~~~i~~~~Ls~~di~~il~~Lv~Dg~i 161 (233)
..|..+-+..|++....|= ...+.+|.+|+..+++..|. .++.++++.++..+ ||.|
T Consensus 49 ~~ls~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~lg~---~~~~~~~~~l~~~~--~g~i 106 (196)
T 3dtp_E 49 AMFTQHQVQEFKEAFQLIDQDKDGFISKNDIRATFDSLGR---LCTEQELDSMVAEA--PGPI 106 (196)
T ss_dssp CSSCTTTHHHHHHHHHHHCCSCSSBCCHHHHHHHHHTTSC---CCCHHHHHHHHTTS--SSCC
T ss_pred hhCCHHHHHHHHHHHHHHCCCCCCcCCHHHHHHHHHHhCC---CCCHHHHHHHHHHc--cCCC
Confidence 4566667778877766552 34689999999999999884 58999999998876 6655
No 432
>2dk8_A DNA-directed RNA polymerase III 39 kDa polypeptide; structural genomics, RNA_POL_RPC34 domain, RNA polymerase III C39 subunit, NPPSFA; NMR {Mus musculus} SCOP: a.4.5.85
Probab=49.80 E-value=68 Score=23.12 Aligned_cols=62 Identities=15% Similarity=0.147 Sum_probs=45.4
Q ss_pred HHHHHHHHHHhhhC-CCCCHHHHHHHHHHhCCcccccCHHHHHHHHHHHhcCCeEEEEeeCCCCCcccccCcceeeeccc
Q 026766 108 KVVKSQCLKQIIKL-KVATLEGISDSIKRSGAFKVDLTKQQIEEIVRALVLDNQIMEVKSNGSGEFTNIPVGKVCYKNVS 186 (233)
Q Consensus 108 ~~l~~~~~~~i~~~-~~~T~~~I~~~I~~~~i~~~~Ls~~di~~il~~Lv~Dg~ie~v~~~~~g~f~~~~~g~~~Yr~~~ 186 (233)
+.+...++.+++++ ..+|=+++...+ -.++.++.-..||.|.-.|+|+-.+.. |...||...
T Consensus 13 ~~ie~~IL~l~~~~P~GItd~~L~~~~-------p~~~~~~r~~aIN~LL~~gkiel~K~~----------~~liYr~k~ 75 (81)
T 2dk8_A 13 VEIENRIIELCHQFPHGITDQVIQNEM-------PHIEAQQRAVAINRLLSMGQLDLLRSN----------TGLLYRIKD 75 (81)
T ss_dssp HHHHHHHHHHHHHCSSCEEHHHHHHHC-------TTSCHHHHHHHHHHHHHHTSEEEEECS----------SSEEEEECC
T ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHC-------CCCCHHHHHHHHHHHHHcCCeEEEecC----------CeEEEEecc
Confidence 45566688888765 356666655544 268999999999999999999977643 235799754
No 433
>3rm1_A Protein S100-B; alpha-helical, EF hand, metal binding protein-protein bindin; 1.24A {Bos taurus} PDB: 3rlz_A 1cfp_A 3cr2_A 3cr4_X* 3cr5_X* 3gk1_A* 3gk2_A* 3gk4_X* 3iqo_A 3iqq_A 3lle_A* 1psb_A 3czt_X 2h61_A 3d0y_A* 3d10_A* 3hcm_A* 3lk1_A* 3lk0_A* 1b4c_A ...
Probab=49.80 E-value=61 Score=22.37 Aligned_cols=50 Identities=4% Similarity=-0.028 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHhhhCC---CCCHHHHHHHHHH-----hCCcccccCHHHHHHHHHHHhcC
Q 026766 106 FIKVVKSQCLKQIIKLK---VATLEGISDSIKR-----SGAFKVDLTKQQIEEIVRALVLD 158 (233)
Q Consensus 106 fI~~l~~~~~~~i~~~~---~~T~~~I~~~I~~-----~~i~~~~Ls~~di~~il~~Lv~D 158 (233)
-++.|+++...|=...+ +.|.+|+...++. .| ..++.++++++++.+=.|
T Consensus 7 ~~~~l~~~F~~~D~~dG~~g~Is~~EL~~~l~~~~~~~lg---~~~~~~~v~~~~~~~D~d 64 (92)
T 3rm1_A 7 AVVALIDVFHQYSGREGDKHKLKKSELKELINNELSHFLE---EIKEQEVVDKVMETLDSN 64 (92)
T ss_dssp HHHHHHHHHHHHHTSSSSTTSBCHHHHHHHHHHHCTTTSC---CCCSHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHccCCCCcCeECHHHHHHHHHHHhhhhcc---CcccHHHHHHHHHHHcCC
Confidence 45666666666653334 9999999999998 45 368999999999987554
No 434
>1exr_A Calmodulin; high resolution, disorder, metal transport; 1.00A {Paramecium tetraurelia} SCOP: a.39.1.5 PDB: 1n0y_A 1osa_A 1clm_A 1mxe_A 2bbm_A 2bbn_A 4cln_A 4djc_A 2wel_D* 2x51_B 2vas_B* 2bkh_B 3gn4_B 3l9i_C 2ygg_B* 2w73_A 1lvc_D* 1wrz_A 2bki_B 2r28_A ...
Probab=49.65 E-value=72 Score=23.13 Aligned_cols=35 Identities=14% Similarity=0.318 Sum_probs=29.9
Q ss_pred hCCCCCHHHHHHHHHHhCCcccccCHHHHHHHHHHHhc
Q 026766 120 KLKVATLEGISDSIKRSGAFKVDLTKQQIEEIVRALVL 157 (233)
Q Consensus 120 ~~~~~T~~~I~~~I~~~~i~~~~Ls~~di~~il~~Lv~ 157 (233)
..+++|.+|+.+++...|. .++.++++.+++.+--
T Consensus 96 ~~G~I~~~el~~~l~~~g~---~~~~~~~~~~~~~~d~ 130 (148)
T 1exr_A 96 GNGLISAAELRHVMTNLGE---KLTDDEVDEMIREADI 130 (148)
T ss_dssp CSSCBCHHHHHHHHHHTTC---CCCHHHHHHHHHHHCS
T ss_pred CCCcCCHHHHHHHHHHhCC---CCCHHHHHHHHHHhCC
Confidence 3589999999999998874 6999999999998644
No 435
>3i5g_C Myosin catalytic light chain LC-1, mantle muscle; rigor-like, squid, muscle myosin, contractIle protein; 2.60A {Todarodes pacificus} PDB: 3i5f_C 3i5h_C 3i5i_C
Probab=49.34 E-value=29 Score=26.66 Aligned_cols=34 Identities=18% Similarity=0.189 Sum_probs=29.6
Q ss_pred hCCCCCHHHHHHHHHHhCCcccccCHHHHHHHHHHHh
Q 026766 120 KLKVATLEGISDSIKRSGAFKVDLTKQQIEEIVRALV 156 (233)
Q Consensus 120 ~~~~~T~~~I~~~I~~~~i~~~~Ls~~di~~il~~Lv 156 (233)
..|++|.+++.+.++..|. .||.++++.+++.+-
T Consensus 98 ~~G~I~~~el~~~l~~~g~---~ls~~e~~~l~~~~D 131 (159)
T 3i5g_C 98 GQGLISSAEIRNVLKMLGE---RITEDQCNDIFTFCD 131 (159)
T ss_dssp SSSEECHHHHHHHHHHSSS---CCCHHHHHHHHHHTT
T ss_pred CCCcCcHHHHHHHHHHhCC---CCCHHHHHHHHHHhC
Confidence 4689999999999999884 699999999998664
No 436
>2dbb_A Putative HTH-type transcriptional regulator PH006; ASNC family, helix-turn-helix (HTH) domain, structural genom NPPSFA; 2.00A {Pyrococcus horikoshii}
Probab=49.31 E-value=28 Score=26.49 Aligned_cols=50 Identities=20% Similarity=0.177 Sum_probs=42.4
Q ss_pred HHHHHHHHHHhhhCCCCCHHHHHHHHHHhCCcccccCHHHHHHHHHHHhcCCeEEEEe
Q 026766 108 KVVKSQCLKQIIKLKVATLEGISDSIKRSGAFKVDLTKQQIEEIVRALVLDNQIMEVK 165 (233)
Q Consensus 108 ~~l~~~~~~~i~~~~~~T~~~I~~~I~~~~i~~~~Ls~~di~~il~~Lv~Dg~ie~v~ 165 (233)
+.+...++..|+..+..|..+|++.+ .+|..-|...|+.|.-.|.|..+.
T Consensus 8 d~~d~~il~~L~~~~~~s~~ela~~l--------g~s~~tv~~~l~~L~~~G~i~~~~ 57 (151)
T 2dbb_A 8 DRVDMQLVKILSENSRLTYRELADIL--------NTTRQRIARRIDKLKKLGIIRKFT 57 (151)
T ss_dssp CHHHHHHHHHHHHCTTCCHHHHHHHT--------TSCHHHHHHHHHHHHHHTSEEEEE
T ss_pred CHHHHHHHHHHHHcCCCCHHHHHHHH--------CcCHHHHHHHHHHHHHCCCEEEEE
Confidence 35566788899888899999999865 378899999999999999998765
No 437
>3ayh_A DNA-directed RNA polymerase III subunit RPC9; transcription; 2.19A {Schizosaccharomyces pombe}
Probab=49.20 E-value=43 Score=26.10 Aligned_cols=46 Identities=22% Similarity=0.243 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHhhhCCCCC---HHHHHHHHHHhCCcccccCHHHHHHHHHH
Q 026766 107 IKVVKSQCLKQIIKLKVAT---LEGISDSIKRSGAFKVDLTKQQIEEIVRA 154 (233)
Q Consensus 107 I~~l~~~~~~~i~~~~~~T---~~~I~~~I~~~~i~~~~Ls~~di~~il~~ 154 (233)
.+.+-..+++|+.+...++ .+.|.++++... ...|+..++-+|+|.
T Consensus 52 l~ti~~e~l~YL~~~p~~~~q~~e~i~~l~~~L~--~~~Ltk~E~LqivNl 100 (136)
T 3ayh_A 52 LRTIQFEILKYLSSQGNCEGLTKERFLDCIAIFN--EFELTKAEILVILNN 100 (136)
T ss_dssp HHHHHHHHHHHHHTTTCCTTCCHHHHHHHHHTTT--TTCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCccccCHHHHHHHHHHHH--hcCCCHHHHHHHhcc
Confidence 4566677899998876555 999999998755 567888888888875
No 438
>1k2h_A S100A1, S-100 protein, alpha chain; non-covalent homodimer, X-type four-helix bundle, metal binding protein; NMR {Rattus norvegicus} SCOP: a.39.1.2 PDB: 1zfs_A 2k2f_A 2kbm_A 2l0p_A 2jpt_A
Probab=49.17 E-value=56 Score=21.89 Aligned_cols=51 Identities=10% Similarity=0.103 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHh--hhCC-CCCHHHHHHHHHH-----hCCcccccCHHHHHHHHHHHhcCC
Q 026766 106 FIKVVKSQCLKQI--IKLK-VATLEGISDSIKR-----SGAFKVDLTKQQIEEIVRALVLDN 159 (233)
Q Consensus 106 fI~~l~~~~~~~i--~~~~-~~T~~~I~~~I~~-----~~i~~~~Ls~~di~~il~~Lv~Dg 159 (233)
.++.|+.....|= ...+ +++.+|+...++. .| ..++.++++.+++.+=.|+
T Consensus 7 ~~~~l~~~F~~~D~~d~~G~~I~~~el~~~l~~~~~~~~g---~~~~~~~~~~~~~~~D~d~ 65 (93)
T 1k2h_A 7 AMETLINVFHAHSGKEGDKYKLSKKELKDLLQTELSSFLD---VQKDADAVDKIMKELDENG 65 (93)
T ss_dssp HHHHHHHHHHHHHTTSSCCSSCCHHHHHHHHHHHTHHHHH---CCCCHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHcccCCCcCccCHHHHHHHHHHHHHHHhC---CCCCHHHHHHHHHHhCCCC
Confidence 3455665555552 3456 8999999999997 55 3689999999998876543
No 439
>1uth_A LYSR-type regulatory protein; transcription regulation, transcriptional regulator; 2.2A {Burkholderia SP} SCOP: c.94.1.1 PDB: 1utb_A 1utb_B 1uth_B 2uyf_A 2uye_A
Probab=48.83 E-value=3.6 Score=34.60 Aligned_cols=72 Identities=13% Similarity=0.136 Sum_probs=0.0
Q ss_pred CCCCCCCCCCCCCCCCChHHHHHHHHHHhhCCCcccHHHHHHHhhcCCChHHHHHHHHHHHhC---CCceeee-c--ccC
Q 026766 1 MSKRKRPDSNAPSDSLTDHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNK---SLIKEVV-N--IHS 74 (233)
Q Consensus 1 ~~~~~~~~~~~~~~~L~~~e~lVy~~I~~aG~~GIw~~dik~~t~~~l~~~~v~k~LK~Le~k---~lIK~vk-s--V~~ 74 (233)
||.++.-. ..++.|+-.+-.++..+.+.|+ +..+ .+++ +++|..|++.|++||+. .|..+-. . ...
T Consensus 1 ~~~~~~~~--m~~~~m~l~~L~~f~~v~~~gs--~t~A--A~~L--~isq~avS~~I~~LE~~lg~~Lf~R~~r~~~lT~ 72 (315)
T 1uth_A 1 MNNGEGEV--MDLRDIDLNLLVVFNQLLLDRS--VSTA--GEKL--GLTQPAVSNSLKRLRTALNDDLFLRTSKGMEPTP 72 (315)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CCcccccc--cccccCCHHHHHHHHHHHHcCC--HHHH--HHHh--CCCHHHHHHHHHHHHHHhCCcceeecCCCccCCH
Confidence 55555321 2345566677777778888877 4333 4667 99999999999999974 5665532 1 233
Q ss_pred CCeeeE
Q 026766 75 KGKKHL 80 (233)
Q Consensus 75 ~~rK~Y 80 (233)
.++.+|
T Consensus 73 ~G~~l~ 78 (315)
T 1uth_A 73 YALHLA 78 (315)
T ss_dssp ------
T ss_pred HHHHHH
Confidence 455555
No 440
>2jn6_A Protein CGL2762, transposase; GFT PSI-2, protein structure, structural genomics, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: a.4.1.19
Probab=48.75 E-value=44 Score=23.44 Aligned_cols=47 Identities=9% Similarity=0.137 Sum_probs=35.4
Q ss_pred CCChHHHHHHHHHHhhCCC-cccHHHHHHHhhcCCChHHHHHHHHHHHhCCC
Q 026766 15 SLTDHERLIYDVIRSKQDM-GIWTRDMKRELRVNLPDNIVTKSIKSLQNKSL 65 (233)
Q Consensus 15 ~L~~~e~lVy~~I~~aG~~-GIw~~dik~~t~~~l~~~~v~k~LK~Le~k~l 65 (233)
..|+++++ .++...-+. |...++|.++. |++.++|.+-++.....|.
T Consensus 5 ~ys~e~k~--~~v~~~~~~~g~s~~~ia~~~--gIs~~tl~rW~~~~~~~g~ 52 (97)
T 2jn6_A 5 TYSEEFKR--DAVALYENSDGASLQQIANDL--GINRVTLKNWIIKYGSNHN 52 (97)
T ss_dssp CCCHHHHH--HHHHHHTTGGGSCHHHHHHHH--TSCHHHHHHHHHHHCCCST
T ss_pred CCCHHHHH--HHHHHHHHcCCChHHHHHHHH--CcCHHHHHHHHHHHhhcCc
Confidence 45666543 344444334 78999999999 9999999999999887654
No 441
>1neq_A DNA-binding protein NER; NMR {Enterobacteria phage MU} SCOP: a.35.1.2 PDB: 1ner_A
Probab=48.51 E-value=11 Score=26.22 Aligned_cols=38 Identities=8% Similarity=0.197 Sum_probs=27.8
Q ss_pred CCCChHHHHHHHHHHhhCCCcccHHHHHHHhhcCCChHHHHHHHH
Q 026766 14 DSLTDHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIK 58 (233)
Q Consensus 14 ~~L~~~e~lVy~~I~~aG~~GIw~~dik~~t~~~l~~~~v~k~LK 58 (233)
.+++.+. ++..-..+|+.+++|.+++ |+++.+|++.++
T Consensus 7 ~~~~~~r-----i~~~l~~~glT~~~LA~~~--Gvs~stls~~~~ 44 (74)
T 1neq_A 7 RDWHRAD-----VIAGLKKRKLSLSALSRQF--GYAPTTLANALE 44 (74)
T ss_dssp SSCCHHH-----HHHHHHTTSCCHHHHHHHH--SSCHHHHHHTTT
T ss_pred CCCCHHH-----HHHHHHHcCCCHHHHHHHH--CcCHHHHHHHHc
Confidence 3566444 3333346789999999999 999999997643
No 442
>1ufm_A COP9 complex subunit 4; helix-turn-helix, structural genomics, riken structural genomics/proteomics initiative, RSGI, signaling protein; NMR {Mus musculus} SCOP: a.4.5.47
Probab=48.43 E-value=16 Score=26.24 Aligned_cols=55 Identities=13% Similarity=0.169 Sum_probs=40.2
Q ss_pred CCCCHHHHHHHHHHHHHHhhhCCCCCHHHHHHHHHHhCCcccccCHHHHHHHHHHHhcCCeEEEEe
Q 026766 100 GSLDTEFIKVVKSQCLKQIIKLKVATLEGISDSIKRSGAFKVDLTKQQIEEIVRALVLDNQIMEVK 165 (233)
Q Consensus 100 ~e~D~efI~~l~~~~~~~i~~~~~~T~~~I~~~I~~~~i~~~~Ls~~di~~il~~Lv~Dg~ie~v~ 165 (233)
..|...|++.-.+. +.+-...+|++.+++.+ .|++++++.+|-.|+.||+|....
T Consensus 10 ~~L~~~v~E~nl~~---is~~Y~~Isl~~La~ll--------~ls~~~vE~~ls~mI~~~~l~akI 64 (84)
T 1ufm_A 10 SILDRAVIEHNLLS---ASKLYNNITFEELGALL--------EIPAAKAEKIASQMITEGRMNGFI 64 (84)
T ss_dssp CCCCHHHHHHHHHH---HHHSCSEEEHHHHHHHT--------TSCHHHHHHHHHHHHHTTSSCEEE
T ss_pred HHHHHHHHHHHHHH---HHHhcCeeeHHHHHHHH--------CcCHHHHHHHHHHHHhCCcEEEEE
Confidence 46677777655543 33345567788877765 489999999999999999997543
No 443
>1zar_A RIO2 kinase; serine kinase, winged-helix, RIO domain, ADP-Mn complex, rRNA processing, transferase; HET: ADP; 1.75A {Archaeoglobus fulgidus} SCOP: a.4.5.56 d.144.1.9 PDB: 1tqi_A* 1tqp_A* 1tqm_A* 1zao_A*
Probab=48.39 E-value=34 Score=28.85 Aligned_cols=56 Identities=11% Similarity=0.084 Sum_probs=47.6
Q ss_pred CCCCCCChHHHHHHHHHHhhCCCccc--HHHHHHHhhcCCChHHHHHHHHHHHhCCCcee
Q 026766 11 APSDSLTDHERLIYDVIRSKQDMGIW--TRDMKRELRVNLPDNIVTKSIKSLQNKSLIKE 68 (233)
Q Consensus 11 ~~~~~L~~~e~lVy~~I~~aG~~GIw--~~dik~~t~~~l~~~~v~k~LK~Le~k~lIK~ 68 (233)
+.++.|++++..|+..|+..-..--| ...|.+.. +++...+.+.++.|.+.+++..
T Consensus 5 ~~~~~l~~~~~~~l~a~e~g~~~~~~v~~~~i~~~~--~l~~~~~~~~l~~l~~~~l~~~ 62 (282)
T 1zar_A 5 ELYGKMGKHSWRIMDAIFKNLWDYEYVPLQLISSHA--RIGEEKARNILKYLSDLRVVQN 62 (282)
T ss_dssp HHHHTCCHHHHHHHHHHHTTTTTCSSEEHHHHHHHH--TCCHHHHHHHHHHHHHTTSEEE
T ss_pred HHHHhCCHhhhhhhHHHhhCCcCceecCHHHHHHHh--CCChhhHHHHHHHHhhCCCccc
Confidence 34668999999999999987555554 78888889 9999999999999999999765
No 444
>1u5t_A Appears to BE functionally related to SNF7; SNF8P; ESCRT, endosomal, trafficking, protein complex, transport protein; 3.60A {Saccharomyces cerevisiae} SCOP: a.4.5.54 a.4.5.54 PDB: 1w7p_A
Probab=48.29 E-value=25 Score=30.27 Aligned_cols=51 Identities=12% Similarity=0.089 Sum_probs=45.3
Q ss_pred CCCCChHHHHHHHHHHhhCCCcccHHHHHHHhhcCCChHHHHHHHHHHHhCCCce
Q 026766 13 SDSLTDHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIK 67 (233)
Q Consensus 13 ~~~L~~~e~lVy~~I~~aG~~GIw~~dik~~t~~~l~~~~v~k~LK~Le~k~lIK 67 (233)
...|+.++..|+++++..| .+...+|+..+ +.+......+|..|+..|+.=
T Consensus 162 p~el~~D~~~vLe~a~~~g--~vt~~~L~~~l--gW~~~Ra~~~L~~l~~~G~lw 212 (233)
T 1u5t_A 162 PNELTSDQTKILEICSILG--YSSISLLKANL--GWEAVRSKSALDEMVANGLLW 212 (233)
T ss_dssp SSCCCTTHHHHHHTTTTTS--CCBHHHHHHHH--CCCSHHHHHHHHHHHHTTSSE
T ss_pred CCccchHHHHHHHHHHhcC--cCcHHHHHHHh--CCCHHHHHHHHHHHHHCCCEE
Confidence 4468999999999987655 59999999999 999999999999999999973
No 445
>2y75_A HTH-type transcriptional regulator CYMR; DNA binding protein; 2.00A {Bacillus subtilis}
Probab=48.27 E-value=33 Score=25.46 Aligned_cols=44 Identities=16% Similarity=0.314 Sum_probs=33.7
Q ss_pred HHHHhhh---CCCCCHHHHHHHHHHhCCcccccCHHHHHHHHHHHhcCCeEEEEe
Q 026766 114 CLKQIIK---LKVATLEGISDSIKRSGAFKVDLTKQQIEEIVRALVLDNQIMEVK 165 (233)
Q Consensus 114 ~~~~i~~---~~~~T~~~I~~~I~~~~i~~~~Ls~~di~~il~~Lv~Dg~ie~v~ 165 (233)
++.+|.. .+.+|.++|++.+ .++..-++++|+.|+-.|.|+..+
T Consensus 14 iL~~la~~~~~~~~s~~ela~~~--------~i~~~~v~~il~~L~~~Glv~~~~ 60 (129)
T 2y75_A 14 IMIELAKKHGEGPTSLKSIAQTN--------NLSEHYLEQLVSPLRNAGLVKSIR 60 (129)
T ss_dssp HHHHHHHTTTSCCBCHHHHHHHT--------TSCHHHHHHHHHHHHHTTSEEEC-
T ss_pred HHHHHHhCCCCCcCCHHHHHHHH--------CcCHHHHHHHHHHHHHCCceEecC
Confidence 3445544 3568899988755 478899999999999999998765
No 446
>2jnf_A Troponin C; stretch activated muscle contraction, EF-hand, metal binding protein; NMR {Lethocerus indicus} PDB: 2k2a_A
Probab=48.25 E-value=76 Score=23.01 Aligned_cols=112 Identities=7% Similarity=0.142 Sum_probs=0.0
Q ss_pred CCCCCChHH----HHHHHHHH-hhCCCcccHHHHHHHh---hcCCChHHHHHHHHHHHhCCCceeeecccCCCeeeEEee
Q 026766 12 PSDSLTDHE----RLIYDVIR-SKQDMGIWTRDMKREL---RVNLPDNIVTKSIKSLQNKSLIKEVVNIHSKGKKHLMAV 83 (233)
Q Consensus 12 ~~~~L~~~e----~lVy~~I~-~aG~~GIw~~dik~~t---~~~l~~~~v~k~LK~Le~k~lIK~vksV~~~~rK~Yml~ 83 (233)
.+..|++++ +.++..+. ..|+--|...+++.-+ +.+++...+...++.+ .....++--|
T Consensus 3 ~~~~l~~~~~~~l~~~F~~~D~~~~~G~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~----------D~~~~g~i~~--- 69 (158)
T 2jnf_A 3 DVSKLSSNQVKLLETAFRDFETPEGSGRVSTDQIGIILEVLGIQQTKSTIRQLIDEF----------DPFGNGDIDF--- 69 (158)
T ss_dssp CSTTSCHHHHHHHHHHHHHSBCSSSCSSEEHHHHHHHHHHTTCSCSHHHHHHHHHHH----------CTTCCSEECH---
T ss_pred chhhCCHHHHHHHHHHHHHhCCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHh----------CCCCCCcCcH---
Q ss_pred ccccCCCcccCCcccCCCCCHHHHHHH----------------HHHHHHHhh--hCCCCCHHHHHHHHHHhCCcccccCH
Q 026766 84 EFEPSKEISGGAWYSEGSLDTEFIKVV----------------KSQCLKQII--KLKVATLEGISDSIKRSGAFKVDLTK 145 (233)
Q Consensus 84 ~lePs~eiTGG~wy~d~e~D~efI~~l----------------~~~~~~~i~--~~~~~T~~~I~~~I~~~~i~~~~Ls~ 145 (233)
.||+..+ -+.+++.+. ..+++|.+|+..+++..| ..++.
T Consensus 70 --------------------~eF~~~~~~~~~~~~~~~~~~~~~~~~F~~~D~d~~G~I~~~el~~~l~~~g---~~~~~ 126 (158)
T 2jnf_A 70 --------------------DSFKIIGARFLGEEVNPEQMQQELREAFRLYDKEGNGYISTDVMREILAELD---ETLSS 126 (158)
T ss_dssp --------------------HHHHHHHHHHCCCCCCTTTTSSTHHHHHHHHCSSSSSSEEHHHHHHHHHHHC---TTCCH
T ss_pred --------------------HHHHHHHHHHhccccchhhHHHHHHHHHHHhCCCCCCeEcHHHHHHHHHHhC---CcCCH
Q ss_pred HHHHHHHHHHhcCC
Q 026766 146 QQIEEIVRALVLDN 159 (233)
Q Consensus 146 ~di~~il~~Lv~Dg 159 (233)
++++.+++.+-.|+
T Consensus 127 ~~~~~~~~~~D~d~ 140 (158)
T 2jnf_A 127 EDLDAMIDEIDADG 140 (158)
T ss_dssp HHHHHHHHHHCSSC
T ss_pred HHHHHHHHHhCCCC
No 447
>2vxz_A Pyrsv_GP04; viral protein, SSPF, ORF165A; 1.7A {Pyrobaculum spherical virus}
Probab=48.16 E-value=35 Score=27.86 Aligned_cols=52 Identities=15% Similarity=0.160 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHhhhCCCCCHHHHHHHHHHhCCcccccCHHHHHHHHHHHhcCCeEEEEee
Q 026766 106 FIKVVKSQCLKQIIKLKVATLEGISDSIKRSGAFKVDLTKQQIEEIVRALVLDNQIMEVKS 166 (233)
Q Consensus 106 fI~~l~~~~~~~i~~~~~~T~~~I~~~I~~~~i~~~~Ls~~di~~il~~Lv~Dg~ie~v~~ 166 (233)
-|-.-+..++.|+. .|-.|..+|++-+ | ||-..++=+|.+|.=||.|++++.
T Consensus 8 ~v~erk~~ILE~Lk-~G~~~t~~Iak~L---G-----lShg~aq~~Ly~LeREG~V~~Vk~ 59 (165)
T 2vxz_A 8 EVLVRLRDILALLA-DGCKTTSLIQQRL---G-----LSHGRAKALIYVLEKEGRVTRVAF 59 (165)
T ss_dssp HHHHHHHHHHHHHT-TCCEEHHHHHHHH---T-----CCHHHHHHHHHHHHHTTSCEEEEE
T ss_pred HHHHHHHHHHHHHH-hCCccHHHHHHHh---C-----CcHHHHHHHHHHHHhcCceEEEEE
Confidence 34566788899998 8888888877643 4 888999999999999999999974
No 448
>3u5c_T 40S ribosomal protein S19-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_S 3o30_M 3o2z_M 3u5g_T 3jyv_T*
Probab=47.97 E-value=14 Score=29.72 Aligned_cols=46 Identities=11% Similarity=0.224 Sum_probs=32.7
Q ss_pred HHHHHHhhCCCcccHHHHHHHhhc----C--------CChHHHHHHHHHHHhCCCceeee
Q 026766 23 IYDVIRSKQDMGIWTRDMKRELRV----N--------LPDNIVTKSIKSLQNKSLIKEVV 70 (233)
Q Consensus 23 Vy~~I~~aG~~GIw~~dik~~t~~----~--------l~~~~v~k~LK~Le~k~lIK~vk 70 (233)
|+..|--.|.-|+ ..|++.-|- + =+.+.++++|++||+.|||...+
T Consensus 61 i~R~lYl~g~vGV--~~lrk~YGg~krrG~~P~h~~~asg~iiR~~LQqLE~~g~vek~~ 118 (144)
T 3u5c_T 61 VARHIYMRKQVGV--GKLNKLYGGAKSRGVRPYKHIDASGSINRKVLQALEKIGIVEISP 118 (144)
T ss_dssp HHHHHHTSSBCCH--HHHHHHHCCEEEETTEEEEECCCCHHHHHHHHHHHHHTTSEECCS
T ss_pred HHHHHHhcCCCcH--HHHHHHHCCCCCCCCCCccccccCcHHHHHHHHHHHHCCCeeecC
Confidence 6666666676444 778777511 1 23589999999999999997644
No 449
>2xi8_A Putative transcription regulator; HTH DNA-binding motif; HET: GOL; 1.21A {Enterococcus faecalis} PDB: 2gzu_A 1utx_A* 2xj3_A 2xiu_A
Probab=47.44 E-value=15 Score=23.24 Aligned_cols=24 Identities=13% Similarity=0.110 Sum_probs=20.8
Q ss_pred CcccHHHHHHHhhcCCChHHHHHHHH
Q 026766 33 MGIWTRDMKRELRVNLPDNIVTKSIK 58 (233)
Q Consensus 33 ~GIw~~dik~~t~~~l~~~~v~k~LK 58 (233)
.|+.++++.+++ ++++++|++..+
T Consensus 13 ~g~s~~~lA~~~--gis~~~i~~~e~ 36 (66)
T 2xi8_A 13 KKISQSELAALL--EVSRQTINGIEK 36 (66)
T ss_dssp TTCCHHHHHHHH--TSCHHHHHHHHT
T ss_pred cCCCHHHHHHHH--CcCHHHHHHHHc
Confidence 579999999999 999999887653
No 450
>2joj_A Centrin protein; N-terminal domain, centrin solution structure, EF-hand calcium binding protein, cell cycle; NMR {Euplotes octocarinatus}
Probab=47.28 E-value=37 Score=21.82 Aligned_cols=52 Identities=15% Similarity=0.103 Sum_probs=37.4
Q ss_pred HHHHHHHHHHHHHHhh-hCCCCCHHHHHHHHHHhCCcccccCHHHHHHHHHHHhcC
Q 026766 104 TEFIKVVKSQCLKQII-KLKVATLEGISDSIKRSGAFKVDLTKQQIEEIVRALVLD 158 (233)
Q Consensus 104 ~efI~~l~~~~~~~i~-~~~~~T~~~I~~~I~~~~i~~~~Ls~~di~~il~~Lv~D 158 (233)
.+-++.+++....|=. ..++.|.+|+...++..|. .++.++++.+++.+-.|
T Consensus 3 ~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~g~---~~~~~~~~~~~~~~d~~ 55 (77)
T 2joj_A 3 EEQKQEIKEAFDLFDTNKTGSIDYHELKVAMRALGF---DVKKPEILELMNEYDRE 55 (77)
T ss_dssp HHHHHHHHHHHHHHCCSSSSEEEHHHHHHHHHHHTC---CCHHHHHHHHHHHHCCS
T ss_pred HHHHHHHHHHHHHhCCCCCCCCcHHHHHHHHHHhCC---CCCHHHHHHHHHHHCCC
Confidence 3445555555444322 3578999999999999884 58899999999987544
No 451
>3u1d_A Uncharacterized protein; GNTR-superfamily, structural genomics, PSI-biology, midwest for structural genomics, MCSG; 1.80A {Halomicrobium mukohataei}
Probab=46.99 E-value=74 Score=25.42 Aligned_cols=50 Identities=20% Similarity=0.181 Sum_probs=38.7
Q ss_pred HHHHHHHHhhhC--CCCCHHHHHHHHHHhCCcccccCHHHHHHHHHHHhcCCeEEEEee
Q 026766 110 VKSQCLKQIIKL--KVATLEGISDSIKRSGAFKVDLTKQQIEEIVRALVLDNQIMEVKS 166 (233)
Q Consensus 110 l~~~~~~~i~~~--~~~T~~~I~~~I~~~~i~~~~Ls~~di~~il~~Lv~Dg~ie~v~~ 166 (233)
-+..++.+|..+ +.+|+++|.+-+ -.||..=|..-|+.|+=.|.|+.+..
T Consensus 30 tR~~IL~~Ll~~p~~~~ta~eL~~~l-------~~lS~aTVyrhL~~L~eaGLV~~~~~ 81 (151)
T 3u1d_A 30 TRLDVLHQILAQPDGVLSVEELLYRN-------PDETEANLRYHVDELVDRGIVEKIPV 81 (151)
T ss_dssp HHHHHHHHHHHSTTSCBCHHHHHHHC-------TTSCHHHHHHHHHHHHHTTSEEEEEC
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHhc-------CCCCHHHHHHHHHHHHHCCCeEEeec
Confidence 455677777655 458999997531 13899999999999999999998864
No 452
>2w84_A Peroxisomal membrane protein PEX14; zellweger syndrome, alternative splicing, phosphoprotein, protein complex, disease mutation, peroxisome; NMR {Homo sapiens} PDB: 2w85_A
Probab=46.91 E-value=40 Score=23.85 Aligned_cols=41 Identities=17% Similarity=0.263 Sum_probs=31.3
Q ss_pred HHHHHHHHHhhhC--CCCCHHHHHHHHHHhCCcccccCHHHHHHHHHH
Q 026766 109 VVKSQCLKQIIKL--KVATLEGISDSIKRSGAFKVDLTKQQIEEIVRA 154 (233)
Q Consensus 109 ~l~~~~~~~i~~~--~~~T~~~I~~~I~~~~i~~~~Ls~~di~~il~~ 154 (233)
.|-+.-.+||+.. ..+.++.=.+|+++.| ||.+||+..++.
T Consensus 16 ~li~~Av~FLqdp~V~~sp~~~K~~FL~sKG-----Lt~eEI~~Al~r 58 (70)
T 2w84_A 16 PLIATAVKFLQNSRVRQSPLATRRAFLKKKG-----LTDEEIDMAFQQ 58 (70)
T ss_dssp HHHHHHHHHHCSTTGGGSCHHHHHHHHHHTT-----CCHHHHHHHHHH
T ss_pred HHHHHHHHHhCChhhhhCCHHHHHHHHHHcC-----CCHHHHHHHHHH
Confidence 3444556788754 2455888899999998 899999999876
No 453
>1or7_A Sigma-24, RNA polymerase sigma-E factor; regulation, DNA-binding, transmembrane, transcription; 2.00A {Escherichia coli} SCOP: a.4.13.2 a.177.1.1 PDB: 2h27_A
Probab=46.80 E-value=35 Score=26.32 Aligned_cols=41 Identities=17% Similarity=0.214 Sum_probs=30.3
Q ss_pred CCCCChHHHHHHHHHHhhCCCcccHHHHHHHhhcCCChHHHHHHHH
Q 026766 13 SDSLTDHERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIK 58 (233)
Q Consensus 13 ~~~L~~~e~lVy~~I~~aG~~GIw~~dik~~t~~~l~~~~v~k~LK 58 (233)
+..|++.++.|+.+-.- .|...++|...+ |++..+|.+.+.
T Consensus 138 l~~L~~~~r~vl~l~~~---~g~s~~EIA~~l--gis~~tV~~~l~ 178 (194)
T 1or7_A 138 IESLPEDLRMAITLREL---DGLSYEEIAAIM--DCPVGTVRSRIF 178 (194)
T ss_dssp HHHSCHHHHHHHHHHHT---TCCCHHHHHHHT--TSCHHHHHHHHH
T ss_pred HHhCCHHHHHHhHHHHH---cCCCHHHHHHHH--CCCHHHHHHHHH
Confidence 34677877777765443 579999999999 999887664443
No 454
>3b7h_A Prophage LP1 protein 11; structural genomics, PSI2, MCSG, protein structure initiative, midwest center for structural genomics; 2.00A {Lactobacillus plantarum WCFS1}
Probab=46.54 E-value=29 Score=22.75 Aligned_cols=26 Identities=8% Similarity=0.024 Sum_probs=22.0
Q ss_pred hCCCcccHHHHHHHhhcCCChHHHHHHH
Q 026766 30 KQDMGIWTRDMKRELRVNLPDNIVTKSI 57 (233)
Q Consensus 30 aG~~GIw~~dik~~t~~~l~~~~v~k~L 57 (233)
....|+.+++|.+++ ++++.++++..
T Consensus 16 r~~~g~sq~~lA~~~--gis~~~i~~~e 41 (78)
T 3b7h_A 16 ITQQNLTINRVATLA--GLNQSTVNAMF 41 (78)
T ss_dssp HHHTTCCHHHHHHHH--TCCHHHHHHHH
T ss_pred HHHcCCCHHHHHHHH--CcCHHHHHHHH
Confidence 344689999999999 99999998865
No 455
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=46.41 E-value=49 Score=27.69 Aligned_cols=53 Identities=15% Similarity=0.145 Sum_probs=41.1
Q ss_pred CCCChHHHHHHH-HHHhhCCCcccHHHHHHHhhcCCChHHHHHHHHH-HHhCCCcee
Q 026766 14 DSLTDHERLIYD-VIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKS-LQNKSLIKE 68 (233)
Q Consensus 14 ~~L~~~e~lVy~-~I~~aG~~GIw~~dik~~t~~~l~~~~v~k~LK~-Le~k~lIK~ 68 (233)
..|++.|+.++. +++..+.......++.+.+ +++.+++.+-|+. |...++|..
T Consensus 243 ~~l~~~e~~~i~~~~~~~~g~~~~~~~~a~~l--gi~~~tl~~~l~~~~i~~~li~~ 297 (324)
T 1hqc_A 243 LGLEKRDREILEVLILRFGGGPVGLATLATAL--SEDPGTLEEVHEPYLIRQGLLKR 297 (324)
T ss_dssp TCCCHHHHHHHHHHHHHSCSSCCCHHHHHHHT--TSCHHHHHHHTHHHHHHTTSEEE
T ss_pred cCCCHHHHHHHHHHHHHhcCCCchHHHHHHHh--CCCHHHHHHHHhHHHHHhcchhc
Confidence 357776655554 4555555677889999999 9999999998887 889999974
No 456
>2ia0_A Putative HTH-type transcriptional regulator PF086; ASNC, PSI, structural genomics, southeast collaboratory for structural genomics; 2.37A {Pyrococcus furiosus}
Probab=46.40 E-value=47 Score=26.24 Aligned_cols=51 Identities=14% Similarity=0.116 Sum_probs=42.7
Q ss_pred HHHHHHHHHHhhhCCCCCHHHHHHHHHHhCCcccccCHHHHHHHHHHHhcCCeEEEEee
Q 026766 108 KVVKSQCLKQIIKLKVATLEGISDSIKRSGAFKVDLTKQQIEEIVRALVLDNQIMEVKS 166 (233)
Q Consensus 108 ~~l~~~~~~~i~~~~~~T~~~I~~~I~~~~i~~~~Ls~~di~~il~~Lv~Dg~ie~v~~ 166 (233)
+.+...++..|++.+..|..||++-+ .+|..-|...|+.|.-.|.|.....
T Consensus 16 d~~d~~IL~~L~~~~~~s~~eLA~~l--------glS~~tv~~~l~~L~~~G~I~~~~~ 66 (171)
T 2ia0_A 16 DDLDRNILRLLKKDARLTISELSEQL--------KKPESTIHFRIKKLQERGVIERYTI 66 (171)
T ss_dssp CHHHHHHHHHHHHCTTCCHHHHHHHH--------TSCHHHHHHHHHHHHHTTSEEEEEE
T ss_pred CHHHHHHHHHHHHcCCCCHHHHHHHH--------CcCHHHHHHHHHHHHHCCCEEeecc
Confidence 34566788889888889999999866 3888999999999999999987653
No 457
>3k2z_A LEXA repressor; winged helix-turn-helix, SOS system, autoca cleavage, DNA damage, DNA repair, DNA replication, DNA-BIND hydrolase; 1.37A {Thermotoga maritima}
Probab=46.19 E-value=37 Score=27.26 Aligned_cols=47 Identities=17% Similarity=-0.026 Sum_probs=34.0
Q ss_pred HHHHHHHHhhhCC-CCCHHHHHHHHHHhCCcccccCHHHHHHHHHHHhcCCeEEEE
Q 026766 110 VKSQCLKQIIKLK-VATLEGISDSIKRSGAFKVDLTKQQIEEIVRALVLDNQIMEV 164 (233)
Q Consensus 110 l~~~~~~~i~~~~-~~T~~~I~~~I~~~~i~~~~Ls~~di~~il~~Lv~Dg~ie~v 164 (233)
+.+.+..++..++ .+|..||++.+ | |+..-+...|+.|+-+|.|+..
T Consensus 10 il~~I~~~~~~~g~~~s~~eia~~l---g-----l~~~tv~~~l~~Le~~G~i~~~ 57 (196)
T 3k2z_A 10 VLLFIEEFIEKNGYPPSVREIARRF---R-----ITPRGALLHLIALEKKGYIERK 57 (196)
T ss_dssp HHHHHHHHHHHHSSCCCHHHHHHHH---T-----SCHHHHHHHHHHHHHTTSEECC
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHc---C-----CCcHHHHHHHHHHHHCCCEEec
Confidence 3344455555555 58999999877 3 3344589999999999999764
No 458
>3mn2_A Probable ARAC family transcriptional regulator; structural genomics, PSI-2, protein structure initiative; 1.80A {Rhodopseudomonas palustris}
Probab=46.19 E-value=51 Score=23.42 Aligned_cols=41 Identities=10% Similarity=0.055 Sum_probs=35.4
Q ss_pred HHHHHHHHhhCCCcccHHHHHHHhhcCCChHHHHHHHHHHHhC
Q 026766 21 RLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNK 63 (233)
Q Consensus 21 ~lVy~~I~~aG~~GIw~~dik~~t~~~l~~~~v~k~LK~Le~k 63 (233)
..|.++|++.-...+...+|...+ +++.+.+++.+|..-..
T Consensus 5 ~~~~~~i~~~~~~~~~~~~lA~~~--~~s~~~l~r~fk~~~G~ 45 (108)
T 3mn2_A 5 RQVEEYIEANWMRPITIEKLTALT--GISSRGIFKAFQRSRGY 45 (108)
T ss_dssp HHHHHHHHHHTTSCCCHHHHHHHH--TCCHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHcccCCCCHHHHHHHH--CCCHHHHHHHHHHHhCc
Confidence 467788888877789999999999 99999999999986544
No 459
>1wlz_A DJBP, CAP-binding protein complex interacting protein 1 isoform A; EF-hand like, unknown function; 1.60A {Homo sapiens} SCOP: a.39.1.7
Probab=46.16 E-value=34 Score=23.67 Aligned_cols=33 Identities=15% Similarity=0.138 Sum_probs=28.0
Q ss_pred CCCCCHHHHHHHHHHhCCcccccCHHHHHHHHHHHh
Q 026766 121 LKVATLEGISDSIKRSGAFKVDLTKQQIEEIVRALV 156 (233)
Q Consensus 121 ~~~~T~~~I~~~I~~~~i~~~~Ls~~di~~il~~Lv 156 (233)
.++++.+|+...++..|. .++.++++.+++.+-
T Consensus 38 ~G~i~~~el~~~l~~~g~---~~~~~e~~~l~~~~d 70 (105)
T 1wlz_A 38 TNTISREEFRAICNRRVQ---ILTDEQFDRLWNEMP 70 (105)
T ss_dssp SSCBCHHHHHHHHHHHTC---CCCHHHHHHHHTTSC
T ss_pred CCcCcHHHHHHHHHHhCC---CCCHHHHHHHHHHcC
Confidence 589999999999999884 589999999887653
No 460
>3oop_A LIN2960 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; 1.78A {Listeria innocua}
Probab=46.07 E-value=29 Score=25.58 Aligned_cols=46 Identities=17% Similarity=0.117 Sum_probs=34.3
Q ss_pred HHHHHhhhCCCCCHHHHHHHHHHhCCcccccCHHHHHHHHHHHhcCCeEEEEee
Q 026766 113 QCLKQIIKLKVATLEGISDSIKRSGAFKVDLTKQQIEEIVRALVLDNQIMEVKS 166 (233)
Q Consensus 113 ~~~~~i~~~~~~T~~~I~~~I~~~~i~~~~Ls~~di~~il~~Lv~Dg~ie~v~~ 166 (233)
.++.+|...+..|..+|++.+ .++..-|-.+|+.|+-.|.|++...
T Consensus 41 ~iL~~l~~~~~~t~~eLa~~l--------~~~~~~vs~~l~~L~~~Glv~r~~~ 86 (143)
T 3oop_A 41 SVLEGIEANEPISQKEIALWT--------KKDTPTVNRIVDVLLRKELIVREIS 86 (143)
T ss_dssp HHHHHHHHHSSEEHHHHHHHH--------TCCHHHHHHHHHHHHHTTSEEEEC-
T ss_pred HHHHHHHHcCCcCHHHHHHHH--------CCCHhhHHHHHHHHHHCCCeeccCC
Confidence 345555555667777777665 3778889999999999999998753
No 461
>2l0k_A Stage III sporulation protein D; SPOIIID, solution structure, DNA binding, bacillus subti transcription factor, transcription; NMR {Bacillus subtilis}
Probab=45.92 E-value=32 Score=25.18 Aligned_cols=35 Identities=17% Similarity=0.178 Sum_probs=29.5
Q ss_pred HHHHHHHHHhhCCCcccHHHHHHHhhcCCChHHHHHHHHH
Q 026766 20 ERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKS 59 (233)
Q Consensus 20 e~lVy~~I~~aG~~GIw~~dik~~t~~~l~~~~v~k~LK~ 59 (233)
...|.+++...+ +..+||.+.+ |.+..+|++.|..
T Consensus 9 ~~~I~~~l~~~~---~ti~dlA~~~--gVS~~TVsR~L~~ 43 (93)
T 2l0k_A 9 TIKIGKYIVETK---KTVRVIAKEF--GVSKSTVHKDLTE 43 (93)
T ss_dssp HHHHHHHHHHHC---CCHHHHHHHH--TSCHHHHHHHHTT
T ss_pred HHHHHHHHHHcC---CCHHHHHHHH--CCCHHHHHHHHcC
Confidence 446777887765 8999999999 9999999999853
No 462
>3fxq_A LYSR type regulator of TSAMBCD; transcriptional regulator, LTTR, TSAR, WHTH, DNA- transcription, transcription regulation; 1.85A {Comamonas testosteroni} PDB: 3fxr_A* 3fxu_A* 3fzj_A 3n6t_A 3n6u_A*
Probab=45.85 E-value=30 Score=28.38 Aligned_cols=44 Identities=14% Similarity=0.202 Sum_probs=33.3
Q ss_pred HHHHHHHHHHhhCCCcccHHHHHHHhhcCCChHHHHHHHHHHHh---CCCcee
Q 026766 19 HERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQN---KSLIKE 68 (233)
Q Consensus 19 ~e~lVy~~I~~aG~~GIw~~dik~~t~~~l~~~~v~k~LK~Le~---k~lIK~ 68 (233)
.+-.++..+.+.|+ +.. =.+++ +++|..|++.|++||+ -.|..+
T Consensus 5 ~~L~~f~~v~~~gs--~t~--AA~~L--~isq~avS~~i~~LE~~lg~~Lf~R 51 (305)
T 3fxq_A 5 QTLQALICIEEVGS--LRA--AAQLL--HLSQPALSAAIQQLEDELKAPLLVR 51 (305)
T ss_dssp HHHHHHHHHHHHSC--HHH--HHHHT--TCCHHHHHHHHHHHHHHHTSCSEEE
T ss_pred HHHHHHHHHHHcCC--HHH--HHHHh--CCCHHHHHHHHHHHHHHhCCeeEEe
Confidence 45567777778877 433 35678 9999999999999996 566655
No 463
>1on2_A Transcriptional regulator MNTR; helix-turn-helix, DNA-binding protein, metalloregulatory protein; 1.61A {Bacillus subtilis} SCOP: a.4.5.24 a.76.1.1 PDB: 2ev0_A 1on1_A 2ev5_A 2ev6_A* 2f5c_A 2f5d_A 2f5e_A 2f5f_A 2hyf_A* 2hyg_D 3r60_A* 3r61_A*
Probab=45.81 E-value=54 Score=24.27 Aligned_cols=50 Identities=16% Similarity=0.212 Sum_probs=39.3
Q ss_pred HHHHHHHHHHhhhCCCCCHHHHHHHHHHhCCcccccCHHHHHHHHHHHhcCCeEEEEe
Q 026766 108 KVVKSQCLKQIIKLKVATLEGISDSIKRSGAFKVDLTKQQIEEIVRALVLDNQIMEVK 165 (233)
Q Consensus 108 ~~l~~~~~~~i~~~~~~T~~~I~~~I~~~~i~~~~Ls~~di~~il~~Lv~Dg~ie~v~ 165 (233)
+.....++.++...+.+|..+|++.+ .++..-|..+|+.|+-.|.|+..+
T Consensus 7 ~~~L~~i~~l~~~~~~~~~~ela~~l--------~vs~~tvs~~l~~Le~~Glv~r~~ 56 (142)
T 1on2_A 7 EMYIEQIYMLIEEKGYARVSDIAEAL--------AVHPSSVTKMVQKLDKDEYLIYEK 56 (142)
T ss_dssp HHHHHHHHHHHHHHSSCCHHHHHHHH--------TSCHHHHHHHHHHHHHTTSEEEET
T ss_pred HHHHHHHHHHHhhcCCCCHHHHHHHh--------CCCHHHHHHHHHHHHHCCCEEEee
Confidence 34445566666667789999999866 377888999999999999998863
No 464
>2oqg_A Possible transcriptional regulator, ARSR family P; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 1.54A {Rhodococcus SP}
Probab=45.79 E-value=34 Score=24.38 Aligned_cols=47 Identities=15% Similarity=0.203 Sum_probs=36.2
Q ss_pred HHHHHHHhhhCCCCCHHHHHHHHHHhCCcccccCHHHHHHHHHHHhcCCeEEEEee
Q 026766 111 KSQCLKQIIKLKVATLEGISDSIKRSGAFKVDLTKQQIEEIVRALVLDNQIMEVKS 166 (233)
Q Consensus 111 ~~~~~~~i~~~~~~T~~~I~~~I~~~~i~~~~Ls~~di~~il~~Lv~Dg~ie~v~~ 166 (233)
+..++.+| ..+..|+.||++.+ .++..-|...|+.|+-.|.|+....
T Consensus 23 r~~IL~~L-~~~~~~~~ela~~l--------~is~~tv~~~l~~L~~~gli~~~~~ 69 (114)
T 2oqg_A 23 RWEILTEL-GRADQSASSLATRL--------PVSRQAIAKHLNALQACGLVESVKV 69 (114)
T ss_dssp HHHHHHHH-HHSCBCHHHHHHHS--------SSCHHHHHHHHHHHHHTTSEEEEEE
T ss_pred HHHHHHHH-HcCCCCHHHHHHHH--------CcCHHHHHHHHHHHHHCCCeeEEec
Confidence 44566677 44567888887755 4788899999999999999998653
No 465
>3k0l_A Repressor protein; helix-turn-helix, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.35A {Acinetobacter SP}
Probab=45.78 E-value=40 Score=25.55 Aligned_cols=45 Identities=11% Similarity=0.130 Sum_probs=34.1
Q ss_pred HHHHhhhCCCCCHHHHHHHHHHhCCcccccCHHHHHHHHHHHhcCCeEEEEee
Q 026766 114 CLKQIIKLKVATLEGISDSIKRSGAFKVDLTKQQIEEIVRALVLDNQIMEVKS 166 (233)
Q Consensus 114 ~~~~i~~~~~~T~~~I~~~I~~~~i~~~~Ls~~di~~il~~Lv~Dg~ie~v~~ 166 (233)
++.+|...+..|..+|++.+ .++..-|-.+|+.|+-.|.|++...
T Consensus 51 iL~~l~~~~~~t~~eLa~~l--------~~~~~tvs~~l~~Le~~Glv~r~~~ 95 (162)
T 3k0l_A 51 ALSVLAAKPNLSNAKLAERS--------FIKPQSANKILQDLLANGWIEKAPD 95 (162)
T ss_dssp HHHHHHHCTTCCHHHHHHHH--------TSCGGGHHHHHHHHHHTTSEEEEEC
T ss_pred HHHHHHHCCCCCHHHHHHHH--------CCCHHHHHHHHHHHHHCcCeEecCC
Confidence 45555566677777777766 2666778899999999999998764
No 466
>2rdp_A Putative transcriptional regulator MARR; PFAM PF01047, winged-helix binding motif, structural genomics, PSI-2; 2.30A {Geobacillus stearothermophilus}
Probab=45.62 E-value=48 Score=24.41 Aligned_cols=46 Identities=13% Similarity=0.210 Sum_probs=34.6
Q ss_pred HHHHHhhhCCCCCHHHHHHHHHHhCCcccccCHHHHHHHHHHHhcCCeEEEEee
Q 026766 113 QCLKQIIKLKVATLEGISDSIKRSGAFKVDLTKQQIEEIVRALVLDNQIMEVKS 166 (233)
Q Consensus 113 ~~~~~i~~~~~~T~~~I~~~I~~~~i~~~~Ls~~di~~il~~Lv~Dg~ie~v~~ 166 (233)
.++.+|...+..|..+|++.+ .++..-|-.+|+.|+-.|.|+....
T Consensus 46 ~iL~~l~~~~~~t~~ela~~l--------~~~~~tvs~~l~~Le~~Glv~r~~~ 91 (150)
T 2rdp_A 46 VALQWLLEEGDLTVGELSNKM--------YLACSTTTDLVDRMERNGLVARVRD 91 (150)
T ss_dssp HHHHHHHHHCSBCHHHHHHHH--------TCCHHHHHHHHHHHHHTTSEEEEEC
T ss_pred HHHHHHHHcCCCCHHHHHHHH--------CCCchhHHHHHHHHHHCCCeeecCC
Confidence 344555555667777777665 4788889999999999999998753
No 467
>2f2o_A Calmodulin fused with calmodulin-binding domain of calcineurin; EF-hands, calcium, metal binding protein; 2.17A {Bos taurus} PDB: 2f2p_A
Probab=45.51 E-value=91 Score=23.16 Aligned_cols=101 Identities=15% Similarity=0.308 Sum_probs=62.8
Q ss_pred HHHHHHHHhhCCCcccHHHHHHHh---hcCCChHHHHHHHHHHHhCCCceeeecccCCCeeeEEeeccccCCCcccCCcc
Q 026766 21 RLIYDVIRSKQDMGIWTRDMKREL---RVNLPDNIVTKSIKSLQNKSLIKEVVNIHSKGKKHLMAVEFEPSKEISGGAWY 97 (233)
Q Consensus 21 ~lVy~~I~~aG~~GIw~~dik~~t---~~~l~~~~v~k~LK~Le~k~lIK~vksV~~~~rK~Yml~~lePs~eiTGG~wy 97 (233)
+.++..++..|+--|...+++.-+ +.+++...+...++.+-..
T Consensus 14 ~~~F~~~D~d~~G~i~~~e~~~~l~~~~~~~~~~~~~~l~~~~D~~---------------------------------- 59 (179)
T 2f2o_A 14 KEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDAD---------------------------------- 59 (179)
T ss_dssp HHHHHHHCTTCSSCBCHHHHHHHHHHTTCCCCHHHHHHHHHHHCTT----------------------------------
T ss_pred HHHHHHHCCCCCCcCcHHHHHHHHHHcCCCCCHHHHHHHHHHhccC----------------------------------
Confidence 356667777777678888887765 2244555555555544211
Q ss_pred cCCCCCH-HHHHHHHHHH------------HHHhh--hCCCCCHHHHHHHHHHhCCcccccCHHHHHHHHHHHhcC
Q 026766 98 SEGSLDT-EFIKVVKSQC------------LKQII--KLKVATLEGISDSIKRSGAFKVDLTKQQIEEIVRALVLD 158 (233)
Q Consensus 98 ~d~e~D~-efI~~l~~~~------------~~~i~--~~~~~T~~~I~~~I~~~~i~~~~Ls~~di~~il~~Lv~D 158 (233)
.||.++- ||+..+.... ++.+. ..+++|.+|+.+++...|. .++.++++.+++.+-.|
T Consensus 60 ~~g~i~~~EF~~~~~~~~~~~~~~~~~~~~F~~~D~d~~G~I~~~E~~~~l~~~g~---~~~~~~~~~~~~~~D~~ 132 (179)
T 2f2o_A 60 GNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGE---KLTDEEVDEMIREADID 132 (179)
T ss_dssp CSSSBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCSSEECHHHHHHHHHHC-----CCCHHHHHHHHHHHCTT
T ss_pred CCCCCcHHHHHHHHHHHccCcccHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHhCC---CCCHHHHHHHHHHcCCC
Confidence 1333442 4555544332 22221 3578999999999998873 58999999999987443
No 468
>1w7p_D VPS36P, YLR417W; ESCRT-II complex, endosomal protein sorting, protein transpo; 3.60A {Saccharomyces cerevisiae} SCOP: a.4.5.54 a.4.5.54
Probab=45.49 E-value=53 Score=31.80 Aligned_cols=105 Identities=14% Similarity=0.140 Sum_probs=72.8
Q ss_pred ccHHHHHHHh------hc-CCChHHHHHHHHHHHhCCCcee-eecccCCCeeeEEeeccccCCCcccCCcccCCCCCHHH
Q 026766 35 IWTRDMKREL------RV-NLPDNIVTKSIKSLQNKSLIKE-VVNIHSKGKKHLMAVEFEPSKEISGGAWYSEGSLDTEF 106 (233)
Q Consensus 35 Iw~~dik~~t------~~-~l~~~~v~k~LK~Le~k~lIK~-vksV~~~~rK~Yml~~lePs~eiTGG~wy~d~e~D~ef 106 (233)
|.-.||.... |. -+.+..+.++++.|+..|+=-. +..+.. +++.+ ..| . +
T Consensus 435 ItL~DL~~~~NRa~R~g~elISp~Dll~A~~~le~Lg~~~~~L~~~~s---gvlVv--s~~---~--------------~ 492 (566)
T 1w7p_D 435 ITLVDLYAMYNKSMRIGTGLISPMEMREACERFEHLGLNELKLVKVNK---RILCV--TSE---K--------------F 492 (566)
T ss_dssp EEHHHHHHHHHHHTTTTTCCCCHHHHHHHHTTGGGGTCTTCEEEECSS---SCEEE--ESS---C--------------H
T ss_pred EEHHHHHHHHHHhccCCCCccCHHHHHHHHHHHHHcCCCeEEEEEECC---EEEEE--cCC---C--------------c
Confidence 4556666654 12 5889999999999999887544 555542 23332 121 1 1
Q ss_pred HHHHHHHHHHHhhhCCCCCHHHHHHHHHHhCCcccccCHHHHHHHHHHHhcCCeEEE
Q 026766 107 IKVVKSQCLKQIIKLKVATLEGISDSIKRSGAFKVDLTKQQIEEIVRALVLDNQIME 163 (233)
Q Consensus 107 I~~l~~~~~~~i~~~~~~T~~~I~~~I~~~~i~~~~Ls~~di~~il~~Lv~Dg~ie~ 163 (233)
+.....++..++..+++|+.++++-+.... .+-..+..=.++.|+.|+-+|.+-.
T Consensus 493 -~~~~~~il~l~~~~g~vT~~~la~~lg~~~-~~~~Ws~~~A~e~L~~~e~eG~l~r 547 (566)
T 1w7p_D 493 -DVVKEKLVDLIGDNPGSDLLRLTQILSSNN-SKSNWTLGILMEVLQNCVDEGDLLI 547 (566)
T ss_dssp -HHHHHHHHHHHTTSTTCCHHHHHHHHSCSS-SCCCBCHHHHHHHHHHHHHTTSEEE
T ss_pred -hHHHHHHHHHHHhcCCcCHHHHHHHhCCcc-ccCcccHHHHHHHHHHHHHcCCEEE
Confidence 356667777788899999999998887222 2234778888899999999999864
No 469
>3ff5_A PEX14P, peroxisomal biogenesis factor 14; protein import, peroxin, 3 helices bundle, protein transport; HET: DPW; 1.80A {Rattus norvegicus}
Probab=45.25 E-value=54 Score=21.98 Aligned_cols=41 Identities=17% Similarity=0.268 Sum_probs=31.6
Q ss_pred HHHHHHHHHHhhhC--CCCCHHHHHHHHHHhCCcccccCHHHHHHHHH
Q 026766 108 KVVKSQCLKQIIKL--KVATLEGISDSIKRSGAFKVDLTKQQIEEIVR 153 (233)
Q Consensus 108 ~~l~~~~~~~i~~~--~~~T~~~I~~~I~~~~i~~~~Ls~~di~~il~ 153 (233)
+.|-+.-.+||+.. ..++++.=.+|+++.| ||.+||+..++
T Consensus 10 e~li~~Av~FL~dp~V~~sp~~~K~~FL~sKG-----Lt~~EI~~Al~ 52 (54)
T 3ff5_A 10 EPLIATAVKFLQNSRVRQSPLATRRAFLKKKG-----LTDEEIDLAFQ 52 (54)
T ss_dssp HHHHHHHHHHHHCTTGGGSCHHHHHHHHHHTT-----CCHHHHHHHHH
T ss_pred HHHHHHHHHHhCChhhhcCCHHHHHHHHHHcC-----CCHHHHHHHHH
Confidence 45556667888854 3456888899999998 89999998875
No 470
>3oou_A LIN2118 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; HET: BTB; 1.57A {Listeria innocua}
Probab=45.13 E-value=42 Score=23.96 Aligned_cols=42 Identities=5% Similarity=0.126 Sum_probs=36.2
Q ss_pred HHHHHHHHhhCCCcccHHHHHHHhhcCCChHHHHHHHHHHHhCC
Q 026766 21 RLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKS 64 (233)
Q Consensus 21 ~lVy~~I~~aG~~GIw~~dik~~t~~~l~~~~v~k~LK~Le~k~ 64 (233)
..+..+|++.=...+...+|...+ +++.+.+++.+|..-...
T Consensus 8 ~~~~~~i~~~~~~~~~~~~lA~~~--~~S~~~l~r~fk~~~G~s 49 (108)
T 3oou_A 8 QNVLSYITEHFSEGMSLKTLGNDF--HINAVYLGQLFQKEMGEH 49 (108)
T ss_dssp HHHHHHHHHHTTSCCCHHHHHHHH--TSCHHHHHHHHHHHHSSC
T ss_pred HHHHHHHHHHhcCCCCHHHHHHHH--CcCHHHHHHHHHHHHCcC
Confidence 467788888877789999999999 999999999999876543
No 471
>1wwu_A Hypothetical protein FLJ21935; structural genomics, protein regulation, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens}
Probab=45.09 E-value=25 Score=26.58 Aligned_cols=31 Identities=6% Similarity=0.133 Sum_probs=26.2
Q ss_pred CCCHHHHHHHHHHhCCccc--------------ccCHHHHHHHHH
Q 026766 123 VATLEGISDSIKRSGAFKV--------------DLTKQQIEEIVR 153 (233)
Q Consensus 123 ~~T~~~I~~~I~~~~i~~~--------------~Ls~~di~~il~ 153 (233)
..|++|+.+|++..|+++. .|+.+|+++|..
T Consensus 23 ~Ssp~EV~~WL~~kgFS~~tv~~Lg~ltGaqLf~Ltk~eL~~vCg 67 (99)
T 1wwu_A 23 ESGPDEVRAWLEAKAFSPRIVENLGILTGPQLFSLNKEELKKVCG 67 (99)
T ss_dssp TCCHHHHHHHHHHHTCCTTHHHHTTSSCHHHHHTCCHHHHHHHHT
T ss_pred CCCHHHHHHHHHHcCCCHHHHHHHcCCCHHHHHcCCHHHHHHHCc
Confidence 5789999999999998763 478999988874
No 472
>3bro_A Transcriptional regulator; helix_TURN_helix, multiple antibiotic resistance protein (MA structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.04A {Oenococcus oeni} SCOP: a.4.5.28
Probab=45.06 E-value=82 Score=22.71 Aligned_cols=45 Identities=4% Similarity=0.124 Sum_probs=34.0
Q ss_pred HHHHhhhCC--CCCHHHHHHHHHHhCCcccccCHHHHHHHHHHHhcCCeEEEEee
Q 026766 114 CLKQIIKLK--VATLEGISDSIKRSGAFKVDLTKQQIEEIVRALVLDNQIMEVKS 166 (233)
Q Consensus 114 ~~~~i~~~~--~~T~~~I~~~I~~~~i~~~~Ls~~di~~il~~Lv~Dg~ie~v~~ 166 (233)
++.+|...+ ..|..+|++.+ .++..-|-.+|+.|+-.|.|+....
T Consensus 39 iL~~l~~~~~~~~~~~ela~~l--------~~~~~tvs~~l~~Le~~Gli~r~~~ 85 (141)
T 3bro_A 39 IIDYLSRNKNKEVLQRDLESEF--------SIKSSTATVLLQRMEIKKLLYRKVS 85 (141)
T ss_dssp HHHHHHHTTTSCCBHHHHHHHH--------TCCHHHHHHHHHHHHHTTSEEEEEC
T ss_pred HHHHHHHCCCCCcCHHHHHHHH--------CCCcchHHHHHHHHHHCCCEEeeCC
Confidence 455555555 56777777665 3678899999999999999998763
No 473
>2yuf_A NGFI-A-binding protein 1; transcriptional repressor, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=45.02 E-value=58 Score=25.90 Aligned_cols=45 Identities=18% Similarity=0.148 Sum_probs=41.5
Q ss_pred cCCcccCCCCCHHHHHHHHHHHHHHhhhCCCCCHHHHHHHHHHhC
Q 026766 93 GGAWYSEGSLDTEFIKVVKSQCLKQIIKLKVATLEGISDSIKRSG 137 (233)
Q Consensus 93 GG~wy~d~e~D~efI~~l~~~~~~~i~~~~~~T~~~I~~~I~~~~ 137 (233)
||+|=....||.+-|..+.+.+.+.....+-..+.++.+.|+...
T Consensus 1 ~~~~~~~e~L~~~~v~~v~e~~erl~~tlP~~dp~e~~~~l~~~K 45 (142)
T 2yuf_A 1 GSSGSSGEALDAAAALSVAECVERMAPTLPKSDLNEVKELLKTNK 45 (142)
T ss_dssp CCCCCCCCCSCHHHHHHHHHHHHHHHHHSCCCCHHHHHHHHHHCS
T ss_pred CCCCCcccccCHHHHHHHHHHHHHHHhhCCCCCchHHHHHHHHhH
Confidence 899999999999999999999999999998889999999998665
No 474
>4ds7_A Calmodulin, CAM; protein binding, metal binding, structura; 2.15A {Kluyveromyces lactis} PDB: 1lkj_A 2lhh_A 1f54_A 1f55_A
Probab=44.67 E-value=56 Score=23.21 Aligned_cols=55 Identities=11% Similarity=0.149 Sum_probs=41.6
Q ss_pred CCCHHHHHHHHHHHHHHhh-hCCCCCHHHHHHHHHHhCCcccccCHHHHHHHHHHHhcC
Q 026766 101 SLDTEFIKVVKSQCLKQII-KLKVATLEGISDSIKRSGAFKVDLTKQQIEEIVRALVLD 158 (233)
Q Consensus 101 e~D~efI~~l~~~~~~~i~-~~~~~T~~~I~~~I~~~~i~~~~Ls~~di~~il~~Lv~D 158 (233)
.|..+-+..+++....+=. ..+..|.+|+..+++..|. .++.++++.+++.+-.|
T Consensus 4 ~l~~~~~~~l~~~F~~~D~~~~G~i~~~e~~~~l~~~~~---~~~~~~~~~l~~~~d~~ 59 (147)
T 4ds7_A 4 NLTEEQIAEFKEAFALFDKDNSGSISASELATVMRSLGL---SPSEAEVADLMNEIDVD 59 (147)
T ss_dssp CCCHHHHHHHHHHHHHHCTTCSSEEEHHHHHHHHHHTTC---CCCHHHHHHHHHHHCTT
T ss_pred cCCHHHHHHHHHHHHHHCCCCCCCcCHHHHHHHHHHhCC---CCCHHHHHHHHHHhccC
Confidence 4667777777776655533 4578999999999998874 57889999998887543
No 475
>2w7n_A TRFB transcriptional repressor protein; INCP, plasmid, repressor, DNA-binding, transcription/DNA; HET: BRU; 1.85A {Escherichia coli}
Probab=44.66 E-value=21 Score=26.76 Aligned_cols=35 Identities=14% Similarity=0.153 Sum_probs=28.0
Q ss_pred HHHhhCCCcccHHHHHHHhhcCCChHHHHHHHHHHHh
Q 026766 26 VIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQN 62 (233)
Q Consensus 26 ~I~~aG~~GIw~~dik~~t~~~l~~~~v~k~LK~Le~ 62 (233)
+-..-=.+|..+.+|.+++ |++...|+|.|+.-.+
T Consensus 26 ~A~lyYv~g~tQ~eIA~~l--GiSR~~VsrlL~~Ar~ 60 (101)
T 2w7n_A 26 IARGVLVDGKPQATFATSL--GLTRGAVSQAVHRVWA 60 (101)
T ss_dssp HHHHHHTTCCCHHHHHHHH--TCCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCCHHHHHHHH--CCCHHHHHHHHHHHHH
Confidence 3333345789999999999 9999999999987554
No 476
>3tgn_A ADC operon repressor ADCR; helix-turn-helix, transcriptional regulator, transcription; 2.00A {Streptococcus pneumoniae}
Probab=44.44 E-value=46 Score=24.37 Aligned_cols=49 Identities=10% Similarity=0.217 Sum_probs=38.4
Q ss_pred HHHHHHHHHhhhCCCCCHHHHHHHHHHhCCcccccCHHHHHHHHHHHhcCCeEEEEee
Q 026766 109 VVKSQCLKQIIKLKVATLEGISDSIKRSGAFKVDLTKQQIEEIVRALVLDNQIMEVKS 166 (233)
Q Consensus 109 ~l~~~~~~~i~~~~~~T~~~I~~~I~~~~i~~~~Ls~~di~~il~~Lv~Dg~ie~v~~ 166 (233)
.-+-.++.+|...+ .|..+|++.+ .++..-|-.+|+.|+-.|.|+....
T Consensus 38 ~~~~~iL~~l~~~~-~t~~eLa~~l--------~~s~~tvs~~l~~L~~~Glv~r~~~ 86 (146)
T 3tgn_A 38 NTQEHILMLLSEES-LTNSELARRL--------NVSQAAVTKAIKSLVKEGMLETSKD 86 (146)
T ss_dssp HHHHHHHHHHTTCC-CCHHHHHHHH--------TCCHHHHHHHHHHHHHTTSEEC---
T ss_pred HHHHHHHHHHHhCC-CCHHHHHHHH--------CCCHHHHHHHHHHHHHCCCeEeccC
Confidence 33455777888888 9999999987 2778889999999999999998653
No 477
>2jsc_A Transcriptional regulator RV1994C/MT2050; cadmium, transcriptional repressor, solution structure, STRU genomics; NMR {Mycobacterium tuberculosis}
Probab=44.39 E-value=17 Score=26.89 Aligned_cols=48 Identities=13% Similarity=0.205 Sum_probs=35.5
Q ss_pred HHHHHHHHHhhhCCCCCHHHHHHHHHHhCCcccccCHHHHHHHHHHHhcCCeEEEEe
Q 026766 109 VVKSQCLKQIIKLKVATLEGISDSIKRSGAFKVDLTKQQIEEIVRALVLDNQIMEVK 165 (233)
Q Consensus 109 ~l~~~~~~~i~~~~~~T~~~I~~~I~~~~i~~~~Ls~~di~~il~~Lv~Dg~ie~v~ 165 (233)
..+..++.+|.. +..|+.||.+.+ | ++..-|...|+.|+-.|.|+..+
T Consensus 21 ~~r~~IL~~L~~-~~~~~~eLa~~l---g-----is~stvs~~L~~L~~~GlV~~~~ 68 (118)
T 2jsc_A 21 PTRCRILVALLD-GVCYPGQLAAHL---G-----LTRSNVSNHLSCLRGCGLVVATY 68 (118)
T ss_dssp HHHHHHHHHHHT-TCCSTTTHHHHH---S-----SCHHHHHHHHHHHTTTTSEEEEE
T ss_pred HHHHHHHHHHHc-CCCCHHHHHHHH---C-----cCHHHHHHHHHHHHHCCceEEEE
Confidence 445566667763 456777777654 3 67888999999999999998765
No 478
>2pi2_A Replication protein A 32 kDa subunit; FULL-length RPA14/32, ssDNA binding protein, OB-fold, dioxan replication, DNA binding protein; 2.00A {Homo sapiens} SCOP: b.40.4.3 PDB: 2z6k_A 1dpu_A 1z1d_A
Probab=44.37 E-value=4.7 Score=34.97 Aligned_cols=52 Identities=17% Similarity=0.283 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHhhhC---CCCCHHHHHHHHHHhCCcccccCHHHHHHHHHHHhcCCeEEEEe
Q 026766 107 IKVVKSQCLKQIIKL---KVATLEGISDSIKRSGAFKVDLTKQQIEEIVRALVLDNQIMEVK 165 (233)
Q Consensus 107 I~~l~~~~~~~i~~~---~~~T~~~I~~~I~~~~i~~~~Ls~~di~~il~~Lv~Dg~ie~v~ 165 (233)
...+++.++++|+.. ..++.++|.+-++ .+++++|+++|+.|+-+|.|....
T Consensus 205 ~~~~~~~Vl~~i~~~~~~~Gi~~~~I~~~l~-------~~~~~~v~~al~~L~~eG~IYsTi 259 (270)
T 2pi2_A 205 LTVAQNQVLNLIKACPRPEGLNFQDLKNQLK-------HMSVSSIKQAVDFLSNEGHIYSTV 259 (270)
T ss_dssp --------------------------------------------------------------
T ss_pred CCHHHHHHHHHHHhCCCccCCCHHHHHHHhc-------CCCHHHHHHHHHHHHhCCEEeccc
Confidence 345788899999865 3455555555444 378899999999999999997643
No 479
>2cg4_A Regulatory protein ASNC; DNA binding, FFRP, LRP family, transcription, DNA- binding, transcription regulation; 2.4A {Escherichia coli} SCOP: a.4.5.32 d.58.4.2
Probab=44.35 E-value=42 Score=25.52 Aligned_cols=49 Identities=8% Similarity=0.129 Sum_probs=42.1
Q ss_pred HHHHHHHHHhhhCCCCCHHHHHHHHHHhCCcccccCHHHHHHHHHHHhcCCeEEEEe
Q 026766 109 VVKSQCLKQIIKLKVATLEGISDSIKRSGAFKVDLTKQQIEEIVRALVLDNQIMEVK 165 (233)
Q Consensus 109 ~l~~~~~~~i~~~~~~T~~~I~~~I~~~~i~~~~Ls~~di~~il~~Lv~Dg~ie~v~ 165 (233)
.+...++..|+..+..|..||++-+ .+|..-|...|+.|.-.|.|....
T Consensus 8 ~~d~~il~~L~~~~~~s~~ela~~l--------g~s~~tv~~~l~~L~~~G~i~~~~ 56 (152)
T 2cg4_A 8 NLDRGILEALMGNARTAYAELAKQF--------GVSPETIHVRVEKMKQAGIITGAR 56 (152)
T ss_dssp HHHHHHHHHHHHCTTSCHHHHHHHH--------TSCHHHHHHHHHHHHHHTSEEEEE
T ss_pred HHHHHHHHHHHHcCCCCHHHHHHHH--------CcCHHHHHHHHHHHHHcCCcceEE
Confidence 4566788889888899999999876 378999999999999999999764
No 480
>3akb_A Putative calcium binding protein; EF-hand, metal binding protein; 1.50A {Streptomyces coelicolor} PDB: 3aka_A
Probab=44.18 E-value=53 Score=23.90 Aligned_cols=33 Identities=15% Similarity=0.166 Sum_probs=28.5
Q ss_pred CCCCCHHHHHHHHHHhCCcccccCHHHHHHHHHHHhcC
Q 026766 121 LKVATLEGISDSIKRSGAFKVDLTKQQIEEIVRALVLD 158 (233)
Q Consensus 121 ~~~~T~~~I~~~I~~~~i~~~~Ls~~di~~il~~Lv~D 158 (233)
.+++|.+|+..++...| ++.++++.+++.+--|
T Consensus 112 ~G~i~~~E~~~~l~~~~-----~~~~~~~~~~~~~D~d 144 (166)
T 3akb_A 112 DGAVTVADTARALTAFG-----VPEDLARQAAAALDTD 144 (166)
T ss_dssp SSCCBHHHHHHHHHHTT-----CCHHHHHHHHHHHCTT
T ss_pred CCcCCHHHHHHHHHHhC-----CCHHHHHHHHHHhCCC
Confidence 57999999999999887 8999999999986443
No 481
>2fbh_A Transcriptional regulator PA3341; MARR, transcription regulator, APC5857, structural genomics, protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=44.18 E-value=60 Score=23.56 Aligned_cols=44 Identities=9% Similarity=0.182 Sum_probs=33.2
Q ss_pred HHHHh-hhCCCCCHHHHHHHHHHhCCcccccCHHHHHHHHHHHhcCCeEEEEe
Q 026766 114 CLKQI-IKLKVATLEGISDSIKRSGAFKVDLTKQQIEEIVRALVLDNQIMEVK 165 (233)
Q Consensus 114 ~~~~i-~~~~~~T~~~I~~~I~~~~i~~~~Ls~~di~~il~~Lv~Dg~ie~v~ 165 (233)
++.+| ...+..|..+|++.+ .++..-|-.+|+.|+-.|.|+...
T Consensus 42 iL~~l~~~~~~~t~~~la~~l--------~~s~~~vs~~l~~L~~~glv~r~~ 86 (146)
T 2fbh_A 42 VLLHLARHRDSPTQRELAQSV--------GVEGPTLARLLDGLESQGLVRRLA 86 (146)
T ss_dssp HHHHHHHCSSCCBHHHHHHHH--------TCCHHHHHHHHHHHHHTTSEEEEC
T ss_pred HHHHHHHcCCCCCHHHHHHHh--------CCChhhHHHHHHHHHHCCCeeecC
Confidence 44455 445566777777655 378889999999999999999865
No 482
>2g9w_A Conserved hypothetical protein; DNA-binding domain, bacterial transcription repressor, DNA B protein; 1.80A {Mycobacterium tuberculosis} SCOP: a.4.5.39
Probab=44.14 E-value=41 Score=25.34 Aligned_cols=52 Identities=10% Similarity=0.314 Sum_probs=43.3
Q ss_pred HHHHHHHHhhh-CCCCCHHHHHHHHHHhCCcccccCHHHHHHHHHHHhcCCeEEEEe
Q 026766 110 VKSQCLKQIIK-LKVATLEGISDSIKRSGAFKVDLTKQQIEEIVRALVLDNQIMEVK 165 (233)
Q Consensus 110 l~~~~~~~i~~-~~~~T~~~I~~~I~~~~i~~~~Ls~~di~~il~~Lv~Dg~ie~v~ 165 (233)
.+-.++.+|.. .+.+|..||++.+... ..++..-|-.+|+.|+-.|.|++.+
T Consensus 10 ~e~~vL~~L~~~~~~~t~~el~~~l~~~----~~~~~~Tvt~~l~rLe~kGlv~r~~ 62 (138)
T 2g9w_A 10 LERAVMDHLWSRTEPQTVRQVHEALSAR----RDLAYTTVMAVLQRLAKKNLVLQIR 62 (138)
T ss_dssp HHHHHHHHHHTCSSCEEHHHHHHHHTTT----CCCCHHHHHHHHHHHHHTTSEEEEC
T ss_pred HHHHHHHHHHhcCCCCCHHHHHHHHhcc----CCCCHHHHHHHHHHHHHCCCEEEEe
Confidence 35567888887 5889999999999743 2478889999999999999999875
No 483
>3lsg_A Two-component response regulator YESN; structural genomics, PSI-2, protein structure initiative, MCSG; 2.05A {Fusobacterium nucleatum}
Probab=44.02 E-value=54 Score=23.05 Aligned_cols=43 Identities=14% Similarity=0.140 Sum_probs=35.8
Q ss_pred HHHHHHHHHhhCCC-cccHHHHHHHhhcCCChHHHHHHHHHHHhCC
Q 026766 20 ERLIYDVIRSKQDM-GIWTRDMKRELRVNLPDNIVTKSIKSLQNKS 64 (233)
Q Consensus 20 e~lVy~~I~~aG~~-GIw~~dik~~t~~~l~~~~v~k~LK~Le~k~ 64 (233)
-..|..+|++.=.+ .+...+|...+ +++.+.+++.+|..-...
T Consensus 4 ~~~i~~~i~~~~~~~~~~~~~lA~~~--~~S~~~l~r~fk~~~g~s 47 (103)
T 3lsg_A 4 KELIQNIIEESYTDSQFTLSVLSEKL--DLSSGYLSIMFKKNFGIP 47 (103)
T ss_dssp HHHHHHHHHHHTTCTTCCHHHHHHHT--TCCHHHHHHHHHHHHSSC
T ss_pred HHHHHHHHHHHccCCCCCHHHHHHHH--CcCHHHHHHHHHHHHCcC
Confidence 34677888887655 79999999999 999999999999876543
No 484
>1uxc_A FRUR (1-57), fructose repressor; DNA-binding protein, LACI family, transc regulation; NMR {Escherichia coli} SCOP: a.35.1.5 PDB: 1uxd_A
Probab=43.99 E-value=20 Score=24.31 Aligned_cols=22 Identities=9% Similarity=0.130 Sum_probs=18.3
Q ss_pred ccHHHHHHHhhcCCChHHHHHHHH
Q 026766 35 IWTRDMKRELRVNLPDNIVTKSIK 58 (233)
Q Consensus 35 Iw~~dik~~t~~~l~~~~v~k~LK 58 (233)
+.++||.+++ |++..+|+++|.
T Consensus 1 ~T~~diA~~a--GVS~sTVSrvLn 22 (65)
T 1uxc_A 1 MKLDEIARLA--GVSRTTASYVIN 22 (65)
T ss_dssp CCHHHHHHHH--TSCHHHHHHHHH
T ss_pred CCHHHHHHHH--CcCHHHHHHHHc
Confidence 4578888899 999999998875
No 485
>3oio_A Transcriptional regulator (ARAC-type DNA-binding containing proteins); PSI-2, midwest center for structural genomics; 1.65A {Chromobacterium violaceum}
Probab=43.68 E-value=43 Score=24.11 Aligned_cols=43 Identities=7% Similarity=0.062 Sum_probs=36.3
Q ss_pred HHHHHHHHHhhCCCcccHHHHHHHhhcCCChHHHHHHHHHHHhCC
Q 026766 20 ERLIYDVIRSKQDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKS 64 (233)
Q Consensus 20 e~lVy~~I~~aG~~GIw~~dik~~t~~~l~~~~v~k~LK~Le~k~ 64 (233)
=..+..+|++.=...+...+|...+ +++.+.+++.+|..-...
T Consensus 9 i~~~~~~i~~~~~~~~~~~~lA~~~--~~S~~~l~r~fk~~~G~s 51 (113)
T 3oio_A 9 LTEAVSLMEANIEEPLSTDDIAYYV--GVSRRQLERLFKQYLGTV 51 (113)
T ss_dssp HHHHHHHHHTCSSSCCCHHHHHHHH--TSCHHHHHHHHHHHTSSC
T ss_pred HHHHHHHHHhhhcCCCCHHHHHHHH--CcCHHHHHHHHHHHHCcC
Confidence 3467788888877779999999999 999999999999875543
No 486
>3sg6_A Gcamp2, myosin light chain kinase, green fluorescent PROT calmodulin chimera; calcium sensor, fluorescent protein; HET: CRO; 1.70A {Gallus gallus} PDB: 3evu_A* 3ek4_A* 3ek7_A* 3evv_A* 3ek8_A* 3ekh_A* 3sg2_A* 3sg3_A* 3sg7_A* 3ekj_A* 3sg4_A* 3sg5_A* 3evr_A* 3o78_A* 3o77_A* 1trf_A
Probab=43.27 E-value=1.1e+02 Score=28.58 Aligned_cols=105 Identities=14% Similarity=0.297 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHhhCCCcccHHHHHHHh---hcCCChHHHHHHHHHHHhCCCceeeecccCCCeeeEEeeccccCCCcccC
Q 026766 18 DHERLIYDVIRSKQDMGIWTRDMKREL---RVNLPDNIVTKSIKSLQNKSLIKEVVNIHSKGKKHLMAVEFEPSKEISGG 94 (233)
Q Consensus 18 ~~e~lVy~~I~~aG~~GIw~~dik~~t---~~~l~~~~v~k~LK~Le~k~lIK~vksV~~~~rK~Yml~~lePs~eiTGG 94 (233)
.+-+.+++.++..++--|...+++.-+ +.+++...+...++.+-..+
T Consensus 312 ~el~~~F~~fD~D~dG~Is~~EL~~~L~~lg~~~s~eel~~Lf~~~D~Dg------------------------------ 361 (450)
T 3sg6_A 312 AEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADG------------------------------ 361 (450)
T ss_dssp HHHHHHHHHHCTTCSSEECHHHHHHHHHHTTCCCCHHHHHHHHHTTCTTS------------------------------
T ss_pred HHHHHHHHHHCCCCCCcCcHHHHHHHHHHhCCCCCHHHHHHHHHHhccCC------------------------------
Q ss_pred CcccCCCCC-HHHHHHHHHH------------HHHHhh--hCCCCCHHHHHHHHHHhCCcccccCHHHHHHHHHHHhcCC
Q 026766 95 AWYSEGSLD-TEFIKVVKSQ------------CLKQII--KLKVATLEGISDSIKRSGAFKVDLTKQQIEEIVRALVLDN 159 (233)
Q Consensus 95 ~wy~d~e~D-~efI~~l~~~------------~~~~i~--~~~~~T~~~I~~~I~~~~i~~~~Ls~~di~~il~~Lv~Dg 159 (233)
||.+| .||+..+... +++.+. +.++.|.+|+.++++..|. .++.++++.+++.+-.|+
T Consensus 362 ----dG~IsfeEFl~ll~~~~~~~~~~e~l~~aFk~fD~D~dG~Is~eELr~~L~~lG~---~ls~eei~~Lf~~~D~D~ 434 (450)
T 3sg6_A 362 ----NGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGE---KLTDEEVDEMIREADIDG 434 (450)
T ss_dssp ----SSSEEHHHHHHHHHC------CHHHHHHHHHHHCTTCSSEECHHHHHHHHHHHTC---CCCHHHHHHHHHHHCTTS
T ss_pred ----CCcccHHHHHHHHHhhccccchhhHHHHHHHHhCCCCCCeEeHHHHHHHHHHhCC---CCCHHHHHHHHHHhCCCC
No 487
>2dql_A PEX protein; circadian clock associated protein, circadian clock protein; 1.70A {Anabaena SP}
Probab=43.17 E-value=98 Score=22.86 Aligned_cols=72 Identities=10% Similarity=0.025 Sum_probs=51.1
Q ss_pred HHHH-HHHHhhhCCCCCHHHHHHHHHHhCCcccccCHHHHHHHHHHHhcCCeEEEEeeCCCCCcccccCcceeeecccC
Q 026766 110 VKSQ-CLKQIIKLKVATLEGISDSIKRSGAFKVDLTKQQIEEIVRALVLDNQIMEVKSNGSGEFTNIPVGKVCYKNVSK 187 (233)
Q Consensus 110 l~~~-~~~~i~~~~~~T~~~I~~~I~~~~i~~~~Ls~~di~~il~~Lv~Dg~ie~v~~~~~g~f~~~~~g~~~Yr~~~~ 187 (233)
|.-. ++..|.. +..+--+|.+.|.+.. ....++..-|-.+|+.|+-+|.|+.......+ -...+..|+++..
T Consensus 22 l~~~~IL~lL~~-~~~~Gyei~~~l~~~~-~~~~is~gtLY~~L~rLe~~GlI~~~~~~~~~----~~~~rk~Y~LT~~ 94 (115)
T 2dql_A 22 VAICYILYVLLQ-GESYGTELIQQLETEH-PTYRLSDTVLYSAIKFLEDNRAITGYWKKLEG----RGRPRRMYQVSPE 94 (115)
T ss_dssp HHHHHHHHHHTT-SCBCHHHHHHHHHHHC-TTEECCHHHHHHHHHHHHHTTSEEEEEECCTT----CSSCEEEEEECGG
T ss_pred HHHHHHHHHHHh-CCCCHHHHHHHHHHHc-CCCCCCcchHHHHHHHHHHCCCEEEEeeecCC----CCCCcEEEEECHH
Confidence 4444 6666654 5677899999998764 35689999999999999999999986532100 0123577887653
No 488
>3efc_A OMP85, outer membrane protein assembly factor YAET; potra fold, cell membrane, cell outer membrane, ME protein; 3.30A {Escherichia coli}
Probab=43.08 E-value=89 Score=27.66 Aligned_cols=96 Identities=8% Similarity=0.026 Sum_probs=0.0
Q ss_pred CCCcccHHHHHHHh-------hcCCChHHHHHHHHHH----HhCCCceeeeccc---CCCeeeEEeeccccCCC------
Q 026766 31 QDMGIWTRDMKREL-------RVNLPDNIVTKSIKSL----QNKSLIKEVVNIH---SKGKKHLMAVEFEPSKE------ 90 (233)
Q Consensus 31 G~~GIw~~dik~~t-------~~~l~~~~v~k~LK~L----e~k~lIK~vksV~---~~~rK~Yml~~lePs~e------ 90 (233)
||+-+...+|++.+ |.-+.+..+.++.+.| .++|+..+...+. .++.++.+.+.+++...
T Consensus 84 Gn~~~~~~~l~~~l~~~~~~~g~~~~~~~~~~~~~~l~~~y~~~Gy~~a~V~~~~~~~~~~~v~l~~~V~eG~~~~I~~I 163 (395)
T 3efc_A 84 GNKSVKDDMLKQNLEASGVRVGESLDRTTIADIEKGLEDFYYSVGKYSASVKAVVTPLPRNRVDLKLVFQEGVSAEIQQI 163 (395)
T ss_dssp SCTTSCHHHHHHHHHHHTCCSSSCCCGGGHHHHHHHHHHHHHTTTCCSCEEEEECCBCTTSEEEEEEEEECCCCCCCCCC
T ss_pred CCccCCHHHHHHHHHhcCCCCCCccCHHHHHHHHHHHHHHHHHcCccceEEEEEEEECCCCEEEEEEEEecCCeEEEEEE
Q ss_pred ------------------cccC----CcccCCCCCHHHHHHHHHHHHHHhhhCCCCCH
Q 026766 91 ------------------ISGG----AWYSEGSLDTEFIKVVKSQCLKQIIKLKVATL 126 (233)
Q Consensus 91 ------------------iTGG----~wy~d~e~D~efI~~l~~~~~~~i~~~~~~T~ 126 (233)
+.-| .|+.++.||.+-++.-.+.+.++..++||..+
T Consensus 164 ~~~Gn~~~~~~~L~~~~~~~~g~~~~~~~~~~~~~~~~l~~d~~~l~~~y~~~GY~~a 221 (395)
T 3efc_A 164 NIVGNHAFTTDELISHFQLRDEVPWWNVVGDRKYQKQKLAGDLETLRSYYLDRGYARF 221 (395)
T ss_dssp EEESCCSSCTTTTGGGCCCCSSCCSCCSCTTTHHHHHHHHHHHHHHHHHHHHTTCTTC
T ss_pred EEECCcccCHHHHHHHHhCCCCccchhhccCCccCHHHHHhHHHHHHHHHHhCCCceE
No 489
>2mys_B Myosin; muscle protein, motor protein; HET: MLY; 2.80A {Gallus gallus} SCOP: a.39.1.5 PDB: 1i84_U* 1m8q_B* 1mvw_B* 1o18_E* 1o19_B* 1o1a_B* 1o1b_B* 1o1c_B* 1o1d_B* 1o1e_B* 1o1f_B* 1o1g_B* 2w4a_B 2w4g_B 2w4h_B
Probab=43.07 E-value=71 Score=23.51 Aligned_cols=57 Identities=9% Similarity=0.189 Sum_probs=40.2
Q ss_pred CCCHHHHHHHHHHHHHHhh-hCCCCCHHHHHHHHHHhCCcccccCHHHHHHHHHHHhcCCeE
Q 026766 101 SLDTEFIKVVKSQCLKQII-KLKVATLEGISDSIKRSGAFKVDLTKQQIEEIVRALVLDNQI 161 (233)
Q Consensus 101 e~D~efI~~l~~~~~~~i~-~~~~~T~~~I~~~I~~~~i~~~~Ls~~di~~il~~Lv~Dg~i 161 (233)
.|..+-++.|++....|=. ..+.+|.+|+..+++..|.. .++.++++.+++. .||.|
T Consensus 18 ~l~~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~g~~--~~~~~~~~~l~~~--~dg~i 75 (166)
T 2mys_B 18 MFDETEIEDFKEAFTVIDQNADGIIDKDDLRETFAAMGRL--NVKNEELDAMIKE--ASGPI 75 (166)
T ss_pred hCCHHHHHHHHHHHHHHCCCCCCcCCHHHHHHHHHHhCCC--CCCHHHHHHHHHH--CCCCc
Confidence 4556667777666544422 35789999999999988852 5788888888875 36654
No 490
>2v9v_A Selenocysteine-specific elongation factor; transcription, protein conformational change, transcription elongation factor SELB; 1.10A {Moorella thermoacetica} SCOP: a.4.5.35 a.4.5.35
Probab=43.02 E-value=30 Score=25.75 Aligned_cols=40 Identities=8% Similarity=0.189 Sum_probs=34.5
Q ss_pred CCCcccHHHHHHHhhcCCChHHHHHHHHHHHhCCCceeee
Q 026766 31 QDMGIWTRDMKRELRVNLPDNIVTKSIKSLQNKSLIKEVV 70 (233)
Q Consensus 31 G~~GIw~~dik~~t~~~l~~~~v~k~LK~Le~k~lIK~vk 70 (233)
-..||-..+|+.+..+++++..+...|..|++.|.|+.-.
T Consensus 84 ~~~G~~keeLr~~~~~~~~~~~~~~ll~~l~~~g~l~~~~ 123 (135)
T 2v9v_A 84 LRPGLAREELRSRYFSRLPARVYQALLEEWSREGRLQLAA 123 (135)
T ss_dssp TSSCEEHHHHHHHHCTTSCHHHHHHHHHHHHHTTSEEECS
T ss_pred CccCCCHHHHHHHhcccCCHHHHHHHHHHHHHCCCEEecC
Confidence 4579999999999744689999999999999999998743
No 491
>3l9f_A Putative uncharacterized protein SMU.1604C; PADR, transcription regulator; 1.80A {Streptococcus mutans}
Probab=42.99 E-value=54 Score=27.14 Aligned_cols=71 Identities=21% Similarity=0.091 Sum_probs=52.6
Q ss_pred HHHHHHHHhhhCCCCCHHHHHHHHHHhCCcccccCHHHHHHHHHHHhcCCeEEEEeeCCCCCcccccCcceeeeccc
Q 026766 110 VKSQCLKQIIKLKVATLEGISDSIKRSGAFKVDLTKQQIEEIVRALVLDNQIMEVKSNGSGEFTNIPVGKVCYKNVS 186 (233)
Q Consensus 110 l~~~~~~~i~~~~~~T~~~I~~~I~~~~i~~~~Ls~~di~~il~~Lv~Dg~ie~v~~~~~g~f~~~~~g~~~Yr~~~ 186 (233)
++..++..|. .+..+--||.+.|.+..-.-..++...|...|+.|+-+|.|+.......+ ++.+..|+++.
T Consensus 37 ~r~~IL~lL~-~~p~~GYeL~~~l~~~~~~~~~~s~g~lY~~L~rLe~~GlI~~~~~~~~~-----~p~rk~Y~iT~ 107 (204)
T 3l9f_A 37 GKDIILGILS-KKERSGYEINDILQNQLSYFYDGTYGMIYPTLRKLEKDGKITKEVVIQDG-----RPNKNIYAITE 107 (204)
T ss_dssp HHHHHHHHTS-SCCEEHHHHHHHHHHTSTTTEECCTTCHHHHHHHHHHTTSEEEEEECCTT-----SCCEEEEEECH
T ss_pred HHHHHHHHHH-cCCCCHHHHHHHHHHHhCCccCCCcchHHHHHHHHHHCCCeEEEeeccCC-----CCCceEEEECh
Confidence 4667888886 45688999999999764334578999999999999999999875432111 23467798765
No 492
>3r0a_A Putative transcriptional regulator; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.31A {Methanosarcina mazei}
Probab=42.98 E-value=33 Score=25.62 Aligned_cols=50 Identities=14% Similarity=0.202 Sum_probs=40.9
Q ss_pred HHHHHHHHHhhhCCC--CCHHHHHHHHHHhCCcccccCHHHHHHHHHHHhcCCeEEEEee
Q 026766 109 VVKSQCLKQIIKLKV--ATLEGISDSIKRSGAFKVDLTKQQIEEIVRALVLDNQIMEVKS 166 (233)
Q Consensus 109 ~l~~~~~~~i~~~~~--~T~~~I~~~I~~~~i~~~~Ls~~di~~il~~Lv~Dg~ie~v~~ 166 (233)
..+..++.+|.+.+. +|+.||++.+. ++..-|...|+.|+-.|.|++...
T Consensus 26 ~~e~~il~~L~~~~~~~~t~~eLa~~l~--------~s~sTV~r~L~~L~~~GlV~r~~~ 77 (123)
T 3r0a_A 26 KADLNVMKSFLNEPDRWIDTDALSKSLK--------LDVSTVQRSVKKLHEKEILQRSQQ 77 (123)
T ss_dssp HHHHHHHHHHHHSTTCCEEHHHHHHHHT--------SCHHHHHHHHHHHHHTTSEEEEEE
T ss_pred HHHHHHHHHHHHCCCCCcCHHHHHHHHC--------cCHHHHHHHHHHHHHCCCEEeeCC
Confidence 345567888877766 79999998874 788999999999999999998653
No 493
>3g3z_A NMB1585, transcriptional regulator, MARR family; transcription factor, structur genomics, oxford protein production facility; 2.10A {Neisseria meningitidis serogroup B}
Probab=42.81 E-value=38 Score=24.94 Aligned_cols=46 Identities=17% Similarity=0.154 Sum_probs=34.4
Q ss_pred HHHHHhhhCCCCCHHHHHHHHHHhCCcccccCHHHHHHHHHHHhcCCeEEEEee
Q 026766 113 QCLKQIIKLKVATLEGISDSIKRSGAFKVDLTKQQIEEIVRALVLDNQIMEVKS 166 (233)
Q Consensus 113 ~~~~~i~~~~~~T~~~I~~~I~~~~i~~~~Ls~~di~~il~~Lv~Dg~ie~v~~ 166 (233)
.++.+|...+..|..+|++.+ .++..-|-.+|+.|+-.|.|+....
T Consensus 35 ~iL~~l~~~~~~t~~eLa~~l--------~~~~~tvs~~l~~Le~~Glv~r~~~ 80 (145)
T 3g3z_A 35 AVLYTLATEGSRTQKHIGEKW--------SLPKQTVSGVCKTLAGQGLIEWQEG 80 (145)
T ss_dssp HHHHHHHHHCSBCHHHHHHHH--------TCCHHHHHHHHHHHHHTTSEEECCC
T ss_pred HHHHHHHHCCCCCHHHHHHHH--------CCCHHHHHHHHHHHHHCCCEeeccC
Confidence 345555555667777777665 3778889999999999999998643
No 494
>3bdd_A Regulatory protein MARR; putative multiple antibiotic-resistance repressor, structura genomics, joint center for structural genomics, JCSG; 2.20A {Streptococcus suis}
Probab=42.74 E-value=62 Score=23.35 Aligned_cols=46 Identities=9% Similarity=0.204 Sum_probs=36.6
Q ss_pred HHHHHhhhCCCCCHHHHHHHHHHhCCcccccCHHHHHHHHHHHhcCCeEEEEee
Q 026766 113 QCLKQIIKLKVATLEGISDSIKRSGAFKVDLTKQQIEEIVRALVLDNQIMEVKS 166 (233)
Q Consensus 113 ~~~~~i~~~~~~T~~~I~~~I~~~~i~~~~Ls~~di~~il~~Lv~Dg~ie~v~~ 166 (233)
.++.+|...+..|..+|++.+ .++..-|-.+|+.|+-.|.|+....
T Consensus 35 ~iL~~l~~~~~~~~~ela~~l--------~is~~~vs~~l~~L~~~gli~~~~~ 80 (142)
T 3bdd_A 35 SILQTLLKDAPLHQLALQERL--------QIDRAAVTRHLKLLEESGYIIRKRN 80 (142)
T ss_dssp HHHHHHHHHCSBCHHHHHHHH--------TCCHHHHHHHHHHHHHTTSEEEEEC
T ss_pred HHHHHHHhCCCCCHHHHHHHH--------CCCHHHHHHHHHHHHHCCCEEecCC
Confidence 456666666678888888865 3788889999999999999998754
No 495
>3s2w_A Transcriptional regulator, MARR family; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 2.45A {Methanosarcina mazei}
Probab=42.65 E-value=41 Score=25.29 Aligned_cols=45 Identities=16% Similarity=0.265 Sum_probs=33.1
Q ss_pred HHHHhhhCCCCCHHHHHHHHHHhCCcccccCHHHHHHHHHHHhcCCeEEEEee
Q 026766 114 CLKQIIKLKVATLEGISDSIKRSGAFKVDLTKQQIEEIVRALVLDNQIMEVKS 166 (233)
Q Consensus 114 ~~~~i~~~~~~T~~~I~~~I~~~~i~~~~Ls~~di~~il~~Lv~Dg~ie~v~~ 166 (233)
++.+|...+..|..+|++.+ .++..-|-.+|+.|+-.|.|+....
T Consensus 55 vL~~l~~~~~~t~~eLa~~l--------~~~~~tvs~~l~~Le~~Glv~r~~~ 99 (159)
T 3s2w_A 55 FLMRLYREDGINQESLSDYL--------KIDKGTTARAIQKLVDEGYVFRQRD 99 (159)
T ss_dssp HHHHHHHSCSEEHHHHHHHH--------TCCHHHHHHHHHHHHHTTSEEEEEC
T ss_pred HHHHHHHCCCCCHHHHHHHH--------CCCHHHHHHHHHHHHHCCCEEEecC
Confidence 34444445556666666655 4788899999999999999998764
No 496
>2a05_A Cysteine-rich secretory protein-2; alpha helices, 5 disulphide bonds, 2 domains, signaling protein; NMR {Mus musculus}
Probab=42.59 E-value=11 Score=25.85 Aligned_cols=27 Identities=19% Similarity=0.598 Sum_probs=18.3
Q ss_pred CCCCCCCccccCCCCCccCcccccchHhhhc
Q 026766 202 IPCGVCPQINICKPDGVISPKTCVYYTKWLD 232 (233)
Q Consensus 202 vPCg~CPv~~~C~~~G~IsP~~C~Y~~~WL~ 232 (233)
.|||-||- .|..| . .=-.|.|.++|-+
T Consensus 1 ~pC~dCP~--~Cdng-L-CTNpC~y~D~~sN 27 (57)
T 2a05_A 1 GSCASCPN--NCENG-L-CTNSCDFEDLLSN 27 (57)
T ss_dssp CTTSSCTT--CCSSS-S-CSCCCSCCCSSTT
T ss_pred Cchhhcch--hhcCC-c-cCCCCcCcccccc
Confidence 39999996 78643 2 3344888887753
No 497
>3l09_A Putative transcriptional regulator; structural genomics, JOI for structural genomics, JCSG, protein structure initiative transcription regulator; 2.81A {Jannaschia SP}
Probab=42.52 E-value=65 Score=28.03 Aligned_cols=58 Identities=5% Similarity=0.062 Sum_probs=40.9
Q ss_pred HHHHHHH----HhhCCCcccHHHHHHHhhc-CCChHHHHHHHHHHHhCCCceeeecccCCCeeeEEe
Q 026766 21 RLIYDVI----RSKQDMGIWTRDMKRELRV-NLPDNIVTKSIKSLQNKSLIKEVVNIHSKGKKHLMA 82 (233)
Q Consensus 21 ~lVy~~I----~~aG~~GIw~~dik~~t~~-~l~~~~v~k~LK~Le~k~lIK~vksV~~~~rK~Yml 82 (233)
.+|..+. ...| ..||.++|-.-... ++..+.|+-+|..|+++|+|.+. ...++-.|-|
T Consensus 26 Sli~tl~Gd~~~~~g-~~i~~~~Li~l~~~~Gi~~~avR~Al~RL~~~G~l~~~---~~Gr~~~Y~L 88 (266)
T 3l09_A 26 SVLVTCLGDVSRDGV-IEVSGVALSSFVERMGLQPQAMRVALHRLKRDGWVESR---RLGRVGFHRL 88 (266)
T ss_dssp HHHHHHHHHHHHTTC-CCEEHHHHHHHHHHTTCCHHHHHHHHHHHHHTTSEEEE---EETTEEEEEE
T ss_pred HHHHHHHHHHhccCC-CcccHHHHHHHHHHcCCCchHHHHHHHHHHHCCCeeee---ecCCcceEEE
Confidence 3555554 3443 37999997665533 99999999999999999999776 3333444543
No 498
>2d1h_A ST1889, 109AA long hypothetical transcriptional regulator; helix-turn-helix, intermolecular and intramolecular S-S bond structural genomics; 2.05A {Sulfolobus tokodaii} SCOP: a.4.5.50
Probab=42.17 E-value=62 Score=22.23 Aligned_cols=41 Identities=22% Similarity=0.267 Sum_probs=33.4
Q ss_pred HhhhCCCCCHHHHHHHHHHhCCcccccCHHHHHHHHHHHhcCCeEEEEe
Q 026766 117 QIIKLKVATLEGISDSIKRSGAFKVDLTKQQIEEIVRALVLDNQIMEVK 165 (233)
Q Consensus 117 ~i~~~~~~T~~~I~~~I~~~~i~~~~Ls~~di~~il~~Lv~Dg~ie~v~ 165 (233)
.+...+.+|..||++.+ .++..-|..+|+.|+-.|.|+...
T Consensus 30 l~~~~~~~t~~ela~~l--------~is~~tv~~~l~~L~~~g~v~~~~ 70 (109)
T 2d1h_A 30 MVEIEKPITSEELADIF--------KLSKTTVENSLKKLIELGLVVRTK 70 (109)
T ss_dssp HHHHCSCEEHHHHHHHH--------TCCHHHHHHHHHHHHHTTSEEEEE
T ss_pred HHHcCCCCCHHHHHHHH--------CcCHHHHHHHHHHHHHCCCeEeec
Confidence 33346778999999766 378888999999999999999875
No 499
>2obh_A Centrin-2; DNA repair complex EF hand superfamily protein-peptide compl cycle; 1.80A {Homo sapiens} SCOP: a.39.1.5 PDB: 3kf9_A 1m39_A 2a4j_A 2k2i_A 1oqp_A
Probab=41.95 E-value=95 Score=22.47 Aligned_cols=35 Identities=17% Similarity=0.321 Sum_probs=29.5
Q ss_pred CCCCCHHHHHHHHHHhCCcccccCHHHHHHHHHHHhcC
Q 026766 121 LKVATLEGISDSIKRSGAFKVDLTKQQIEEIVRALVLD 158 (233)
Q Consensus 121 ~~~~T~~~I~~~I~~~~i~~~~Ls~~di~~il~~Lv~D 158 (233)
.+++|.+|+.++++..|. .++.++++.+++.+=-|
T Consensus 93 ~G~I~~~el~~~l~~~g~---~~~~~~~~~~~~~~D~d 127 (143)
T 2obh_A 93 TGKISFKNLKRVAKELGE---NLTDEELQEMIDEADRD 127 (143)
T ss_dssp SSSBCHHHHHHHHHHTTC---CCCHHHHHHHHHHHCTT
T ss_pred CCcCcHHHHHHHHHHhCC---CCCHHHHHHHHHHhCCC
Confidence 589999999999998873 58999999999876443
No 500
>3qrx_A Centrin; calcium-binding, EF-hand, cell division, calcium binding, ME binding protein-toxin complex; 2.20A {Chlamydomonas reinhardtii} PDB: 2ggm_A 2ami_A 1zmz_A
Probab=41.76 E-value=75 Score=23.33 Aligned_cols=56 Identities=11% Similarity=0.090 Sum_probs=43.1
Q ss_pred CCCCHHHHHHHHHHHHHH-hhhCCCCCHHHHHHHHHHhCCcccccCHHHHHHHHHHHhcC
Q 026766 100 GSLDTEFIKVVKSQCLKQ-IIKLKVATLEGISDSIKRSGAFKVDLTKQQIEEIVRALVLD 158 (233)
Q Consensus 100 ~e~D~efI~~l~~~~~~~-i~~~~~~T~~~I~~~I~~~~i~~~~Ls~~di~~il~~Lv~D 158 (233)
..|..+-++.|++....+ ....+.+|.+|+..+++..|+ .++.++++.+++.+--|
T Consensus 20 ~~l~~~~~~~l~~~F~~~D~d~~G~i~~~el~~~l~~~~~---~~~~~~~~~~~~~~d~~ 76 (169)
T 3qrx_A 20 VGLTEEQKQEIREAFDLFDTDGSGTIDAKELKVAMRALGF---EPKKEEIKKMISEIDKD 76 (169)
T ss_dssp CCCCHHHHHHHHHHHHHHCTTCCSEECHHHHHHHHHHTSC---CCCHHHHHHHHHHHCSS
T ss_pred CCCCHHHHHHHHHHHHHhCCCCCCcCcHHHHHHHHHHcCC---CCCHHHHHHHHHHhcCC
Confidence 356777788887776655 234689999999999998884 57889999998887443
Done!