Query 026767
Match_columns 233
No_of_seqs 200 out of 1215
Neff 9.0
Searched_HMMs 46136
Date Fri Mar 29 12:24:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026767.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026767hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF14938 SNAP: Soluble NSF att 100.0 2.5E-30 5.4E-35 216.9 20.9 206 2-208 68-278 (282)
2 KOG1585 Protein required for f 100.0 5.5E-30 1.2E-34 202.5 21.4 222 2-223 64-289 (308)
3 KOG1586 Protein required for f 99.9 1.2E-25 2.6E-30 176.9 20.2 207 1-208 66-277 (288)
4 PF14938 SNAP: Soluble NSF att 99.9 3.3E-21 7.2E-26 161.7 22.1 202 4-205 30-239 (282)
5 KOG1130 Predicted G-alpha GTPa 99.8 1.6E-19 3.5E-24 152.7 8.2 197 2-198 88-310 (639)
6 KOG1130 Predicted G-alpha GTPa 99.8 5E-18 1.1E-22 143.7 11.2 190 2-191 128-341 (639)
7 KOG1586 Protein required for f 99.7 1.8E-15 3.9E-20 119.7 20.1 187 5-191 30-221 (288)
8 KOG4626 O-linked N-acetylgluco 99.7 2.7E-16 5.8E-21 138.9 16.4 159 10-191 321-482 (966)
9 KOG1840 Kinesin light chain [C 99.7 3.6E-15 7.7E-20 132.7 23.2 188 4-191 236-435 (508)
10 KOG1840 Kinesin light chain [C 99.7 1E-14 2.2E-19 129.8 23.0 189 3-191 277-476 (508)
11 COG3063 PilF Tfp pilus assembl 99.7 4.2E-15 9E-20 117.6 18.2 178 4-202 30-211 (250)
12 KOG4626 O-linked N-acetylgluco 99.7 1.3E-15 2.8E-20 134.7 15.9 188 9-213 252-473 (966)
13 KOG1585 Protein required for f 99.6 8.7E-13 1.9E-17 105.3 19.6 210 3-213 25-244 (308)
14 TIGR02521 type_IV_pilW type IV 99.5 1.2E-12 2.5E-17 104.6 18.9 168 4-191 26-195 (234)
15 TIGR00990 3a0801s09 mitochondr 99.5 2.3E-12 5E-17 119.2 18.9 164 6-191 328-493 (615)
16 TIGR00990 3a0801s09 mitochondr 99.4 8.9E-12 1.9E-16 115.3 18.4 132 8-157 364-496 (615)
17 TIGR02521 type_IV_pilW type IV 99.4 3.7E-11 8E-16 95.8 18.9 163 9-191 65-229 (234)
18 PRK11788 tetratricopeptide rep 99.4 1.2E-10 2.6E-15 101.5 20.5 91 91-191 217-308 (389)
19 PF13424 TPR_12: Tetratricopep 99.4 1.1E-11 2.3E-16 83.7 10.5 73 7-79 3-77 (78)
20 PRK04841 transcriptional regul 99.3 4.8E-10 1E-14 108.0 23.3 183 8-191 451-638 (903)
21 KOG1941 Acetylcholine receptor 99.3 8.4E-11 1.8E-15 98.9 15.2 167 10-176 123-296 (518)
22 PRK11788 tetratricopeptide rep 99.3 3.4E-10 7.4E-15 98.6 19.5 168 8-191 106-275 (389)
23 TIGR03302 OM_YfiO outer membra 99.3 8.2E-10 1.8E-14 89.9 20.4 179 6-191 30-229 (235)
24 PF13424 TPR_12: Tetratricopep 99.3 4.8E-11 1E-15 80.5 11.0 74 47-120 3-78 (78)
25 PRK11189 lipoprotein NlpI; Pro 99.3 3.9E-10 8.5E-15 95.4 18.5 168 5-191 60-262 (296)
26 PRK09782 bacteriophage N4 rece 99.3 3E-10 6.5E-15 109.3 18.7 113 62-191 590-703 (987)
27 KOG1155 Anaphase-promoting com 99.3 1.4E-10 3E-15 100.1 14.5 157 13-191 334-492 (559)
28 PRK09782 bacteriophage N4 rece 99.3 1.7E-10 3.6E-15 111.1 16.3 146 23-191 590-737 (987)
29 PRK12370 invasion protein regu 99.2 5.8E-10 1.3E-14 102.1 17.0 162 9-191 295-467 (553)
30 PRK04841 transcriptional regul 99.2 4.6E-09 9.9E-14 101.2 23.8 151 5-156 487-640 (903)
31 PRK15174 Vi polysaccharide exp 99.2 7.1E-10 1.5E-14 103.4 17.7 156 14-191 217-378 (656)
32 KOG1126 DNA-binding cell divis 99.2 2.9E-10 6.2E-15 101.7 13.3 161 9-185 421-611 (638)
33 PRK11447 cellulose synthase su 99.2 1.3E-09 2.9E-14 107.5 18.9 173 9-191 303-521 (1157)
34 PRK11447 cellulose synthase su 99.2 1.3E-09 2.9E-14 107.5 18.7 162 14-191 274-444 (1157)
35 PRK15174 Vi polysaccharide exp 99.2 3E-09 6.4E-14 99.2 20.0 119 57-191 220-344 (656)
36 PRK12370 invasion protein regu 99.2 2.2E-09 4.7E-14 98.3 18.3 131 9-156 338-469 (553)
37 KOG1126 DNA-binding cell divis 99.2 1.9E-10 4.1E-15 102.9 10.5 174 9-198 353-557 (638)
38 CHL00033 ycf3 photosystem I as 99.2 3.2E-09 6.9E-14 82.3 15.9 115 4-121 30-146 (168)
39 KOG1155 Anaphase-promoting com 99.1 4.8E-09 1E-13 90.8 17.8 182 8-207 363-550 (559)
40 KOG1941 Acetylcholine receptor 99.1 3.9E-09 8.4E-14 89.0 16.8 147 9-155 206-358 (518)
41 COG3063 PilF Tfp pilus assembl 99.1 1.5E-09 3.2E-14 86.4 13.4 151 43-207 29-183 (250)
42 COG2956 Predicted N-acetylgluc 99.1 1.2E-08 2.6E-13 84.8 18.3 183 6-199 66-285 (389)
43 TIGR02917 PEP_TPR_lipo putativ 99.1 4E-09 8.7E-14 99.8 17.6 160 8-191 702-863 (899)
44 KOG2003 TPR repeat-containing 99.1 1.2E-08 2.6E-13 88.3 18.5 142 2-155 517-687 (840)
45 TIGR02917 PEP_TPR_lipo putativ 99.1 9.3E-09 2E-13 97.4 19.2 137 8-156 55-221 (899)
46 PF13429 TPR_15: Tetratricopep 99.1 1.8E-09 3.9E-14 90.4 12.6 162 10-191 111-274 (280)
47 TIGR03302 OM_YfiO outer membra 99.1 1.2E-08 2.5E-13 83.1 16.9 142 8-155 69-230 (235)
48 PRK15359 type III secretion sy 99.1 3.1E-09 6.8E-14 80.4 12.3 107 30-157 14-121 (144)
49 KOG1173 Anaphase-promoting com 99.1 9.4E-09 2E-13 90.8 16.2 101 52-158 417-519 (611)
50 PRK15359 type III secretion sy 99.1 2.2E-09 4.7E-14 81.2 10.8 111 11-139 26-137 (144)
51 KOG1129 TPR repeat-containing 99.0 1.3E-09 2.7E-14 90.9 9.1 161 12-191 293-455 (478)
52 KOG1173 Anaphase-promoting com 99.0 4.7E-09 1E-13 92.6 13.0 179 9-204 346-529 (611)
53 PRK15179 Vi polysaccharide bio 99.0 1.1E-08 2.4E-13 95.3 16.1 137 4-158 81-218 (694)
54 PRK11189 lipoprotein NlpI; Pro 99.0 1.9E-08 4.2E-13 85.0 16.3 151 23-191 40-191 (296)
55 PF09976 TPR_21: Tetratricopep 99.0 7.3E-08 1.6E-12 72.8 17.8 135 7-155 10-145 (145)
56 PRK10370 formate-dependent nit 99.0 2.9E-08 6.3E-13 79.1 15.9 97 49-157 73-173 (198)
57 PRK02603 photosystem I assembl 99.0 3.5E-08 7.6E-13 76.7 14.2 107 4-119 30-144 (172)
58 PRK15179 Vi polysaccharide bio 98.9 7.4E-08 1.6E-12 89.8 18.1 154 18-191 58-214 (694)
59 CHL00033 ycf3 photosystem I as 98.9 4.6E-08 1E-12 75.7 13.0 110 43-155 29-140 (168)
60 KOG2003 TPR repeat-containing 98.9 6.4E-08 1.4E-12 84.0 14.6 173 13-207 494-670 (840)
61 PRK15363 pathogenicity island 98.9 1.8E-07 3.8E-12 71.0 14.6 110 37-158 22-133 (157)
62 cd05804 StaR_like StaR_like; a 98.8 2.1E-07 4.6E-12 80.1 16.4 175 8-191 5-212 (355)
63 PRK10370 formate-dependent nit 98.8 1.5E-07 3.3E-12 74.9 13.8 126 61-202 52-182 (198)
64 PRK02603 photosystem I assembl 98.8 3.9E-07 8.4E-12 70.8 15.5 98 41-147 27-125 (172)
65 PRK10049 pgaA outer membrane p 98.8 4.4E-07 9.6E-12 86.2 18.5 179 15-206 278-469 (765)
66 KOG2002 TPR-containing nuclear 98.8 1.3E-06 2.9E-11 81.6 20.3 186 8-199 306-565 (1018)
67 cd00189 TPR Tetratricopeptide 98.8 6.5E-08 1.4E-12 65.2 9.0 93 51-155 2-95 (100)
68 PRK10049 pgaA outer membrane p 98.8 4E-07 8.6E-12 86.6 17.1 152 17-191 23-176 (765)
69 PF13429 TPR_15: Tetratricopep 98.8 2.1E-07 4.5E-12 77.9 13.2 131 7-155 144-275 (280)
70 cd00189 TPR Tetratricopeptide 98.8 6.5E-08 1.4E-12 65.2 8.3 95 11-117 2-97 (100)
71 COG5010 TadD Flp pilus assembl 98.8 2.4E-07 5.2E-12 75.1 12.7 140 52-207 103-245 (257)
72 PF13525 YfiO: Outer membrane 98.7 4.8E-06 1E-10 66.6 19.9 172 6-185 2-198 (203)
73 KOG0553 TPR repeat-containing 98.7 1.4E-07 3E-12 77.9 11.1 100 47-158 79-179 (304)
74 PRK15363 pathogenicity island 98.7 8.1E-07 1.8E-11 67.4 14.2 100 8-119 34-134 (157)
75 cd05804 StaR_like StaR_like; a 98.7 2.1E-07 4.6E-12 80.1 12.5 138 11-156 45-214 (355)
76 PF12895 Apc3: Anaphase-promot 98.7 1.4E-07 3.1E-12 64.4 9.2 83 61-154 2-84 (84)
77 TIGR02552 LcrH_SycD type III s 98.7 3.7E-07 8.1E-12 67.6 11.8 99 47-157 15-114 (135)
78 TIGR02795 tol_pal_ybgF tol-pal 98.7 4.4E-07 9.6E-12 65.2 11.9 104 9-118 2-106 (119)
79 KOG0548 Molecular co-chaperone 98.7 8.2E-07 1.8E-11 78.3 15.4 154 7-177 296-471 (539)
80 PRK10866 outer membrane biogen 98.7 5.9E-06 1.3E-10 67.9 19.7 172 10-189 33-236 (243)
81 PF09976 TPR_21: Tetratricopep 98.7 3.1E-06 6.6E-11 63.9 16.7 128 53-191 16-144 (145)
82 TIGR02552 LcrH_SycD type III s 98.7 2.7E-07 6E-12 68.3 10.7 100 7-118 15-115 (135)
83 PF12688 TPR_5: Tetratrico pep 98.7 1.5E-06 3.3E-11 63.5 14.1 101 10-116 2-103 (120)
84 TIGR02795 tol_pal_ybgF tol-pal 98.7 5.5E-07 1.2E-11 64.7 11.6 102 50-157 3-105 (119)
85 PF13414 TPR_11: TPR repeat; P 98.7 1.9E-07 4.1E-12 61.1 8.2 63 88-156 3-66 (69)
86 KOG0543 FKBP-type peptidyl-pro 98.7 6.7E-07 1.4E-11 76.7 13.5 105 48-158 207-321 (397)
87 KOG1125 TPR repeat-containing 98.6 4.5E-07 9.7E-12 80.5 12.2 96 50-157 431-527 (579)
88 PLN03088 SGT1, suppressor of 98.6 3.3E-07 7.1E-12 79.5 11.1 90 56-157 9-99 (356)
89 PLN03088 SGT1, suppressor of 98.6 8.9E-07 1.9E-11 76.8 13.5 94 12-117 5-99 (356)
90 KOG0553 TPR repeat-containing 98.6 8.9E-07 1.9E-11 73.2 12.2 122 6-145 78-200 (304)
91 PF12688 TPR_5: Tetratrico pep 98.6 1.7E-06 3.8E-11 63.1 12.5 100 50-155 2-102 (120)
92 KOG1125 TPR repeat-containing 98.6 2.7E-07 5.9E-12 81.9 9.7 101 9-121 430-531 (579)
93 PF13414 TPR_11: TPR repeat; P 98.6 3.8E-07 8.3E-12 59.6 7.8 63 49-117 3-67 (69)
94 KOG1129 TPR repeat-containing 98.6 2.8E-07 6E-12 77.1 7.9 171 12-198 226-428 (478)
95 PF12895 Apc3: Anaphase-promot 98.5 9.7E-07 2.1E-11 60.2 9.1 83 21-114 1-84 (84)
96 KOG0550 Molecular chaperone (D 98.5 2.6E-06 5.5E-11 73.3 12.6 135 16-158 210-351 (486)
97 KOG2002 TPR-containing nuclear 98.5 3.7E-06 8.1E-11 78.7 14.6 173 10-191 271-478 (1018)
98 KOG0548 Molecular co-chaperone 98.5 1.9E-05 4.2E-10 69.8 18.2 173 8-191 223-452 (539)
99 COG5010 TadD Flp pilus assembl 98.5 7.5E-06 1.6E-10 66.5 14.4 162 35-213 53-219 (257)
100 COG2956 Predicted N-acetylgluc 98.5 3.1E-05 6.7E-10 64.9 18.2 142 5-158 137-279 (389)
101 KOG0547 Translocase of outer m 98.5 4.9E-06 1.1E-10 73.0 14.1 164 11-191 396-563 (606)
102 PRK14574 hmsH outer membrane p 98.5 1.3E-05 2.8E-10 76.3 17.4 158 11-191 36-195 (822)
103 PRK10803 tol-pal system protei 98.4 7.1E-06 1.5E-10 68.2 12.7 102 11-118 145-247 (263)
104 PRK10747 putative protoheme IX 98.4 0.00017 3.7E-09 63.6 21.4 194 8-218 83-317 (398)
105 KOG0547 Translocase of outer m 98.4 1.4E-05 3E-10 70.2 13.7 163 7-191 324-488 (606)
106 TIGR00540 hemY_coli hemY prote 98.4 3.3E-05 7.1E-10 68.3 16.6 58 129-191 336-396 (409)
107 PRK10747 putative protoheme IX 98.4 5.5E-05 1.2E-09 66.7 17.9 185 11-206 120-370 (398)
108 KOG4555 TPR repeat-containing 98.3 2.1E-05 4.6E-10 57.7 12.2 102 8-117 42-144 (175)
109 PRK10803 tol-pal system protei 98.3 1.7E-05 3.7E-10 65.9 13.2 100 50-155 143-244 (263)
110 KOG2076 RNA polymerase III tra 98.3 7.5E-05 1.6E-09 69.7 18.1 166 8-191 138-306 (895)
111 PRK14574 hmsH outer membrane p 98.3 3.3E-05 7E-10 73.7 16.3 162 14-198 73-238 (822)
112 PLN03218 maturation of RBCL 1; 98.3 8.9E-05 1.9E-09 72.6 19.2 94 90-191 686-780 (1060)
113 PLN03081 pentatricopeptide (PP 98.3 6.7E-05 1.5E-09 70.8 17.9 26 11-36 191-216 (697)
114 PLN03081 pentatricopeptide (PP 98.3 0.00016 3.5E-09 68.2 20.2 95 90-191 393-488 (697)
115 TIGR00540 hemY_coli hemY prote 98.3 8.9E-05 1.9E-09 65.6 17.3 130 9-155 84-214 (409)
116 KOG4555 TPR repeat-containing 98.2 3.3E-05 7.2E-10 56.7 11.3 102 49-158 43-145 (175)
117 PF13432 TPR_16: Tetratricopep 98.2 9.4E-06 2E-10 52.3 7.8 58 93-156 2-59 (65)
118 KOG0543 FKBP-type peptidyl-pro 98.2 3.3E-05 7.2E-10 66.5 13.1 139 5-155 204-353 (397)
119 PLN03218 maturation of RBCL 1; 98.2 0.00017 3.7E-09 70.6 19.4 59 130-191 651-710 (1060)
120 PRK14720 transcript cleavage f 98.2 5.6E-05 1.2E-09 72.0 14.1 134 7-155 29-176 (906)
121 PF12862 Apc5: Anaphase-promot 98.1 7.5E-05 1.6E-09 52.1 11.3 76 61-136 11-89 (94)
122 PLN03077 Protein ECB2; Provisi 98.1 0.00046 1E-08 66.7 20.2 95 90-191 556-651 (857)
123 PF12862 Apc5: Anaphase-promot 98.1 0.00014 3E-09 50.8 12.2 78 21-98 10-91 (94)
124 KOG2076 RNA polymerase III tra 98.1 0.0001 2.2E-09 68.8 14.5 135 45-190 410-551 (895)
125 KOG4162 Predicted calmodulin-b 98.1 0.00011 2.4E-09 67.6 13.9 132 9-158 650-784 (799)
126 PF13432 TPR_16: Tetratricopep 98.1 9.3E-06 2E-10 52.3 5.2 56 56-117 4-60 (65)
127 KOG0550 Molecular chaperone (D 98.1 6.7E-05 1.5E-09 64.7 11.4 164 16-191 176-347 (486)
128 PRK14720 transcript cleavage f 98.1 0.0001 2.2E-09 70.2 13.8 165 10-191 117-284 (906)
129 PF09295 ChAPs: ChAPs (Chs5p-A 98.0 0.00017 3.7E-09 63.2 14.0 117 17-154 177-294 (395)
130 KOG1128 Uncharacterized conser 98.0 9E-05 1.9E-09 67.9 12.1 123 53-191 489-613 (777)
131 PF10602 RPN7: 26S proteasome 98.0 0.00052 1.1E-08 53.7 14.8 128 25-155 12-140 (177)
132 KOG3060 Uncharacterized conser 98.0 0.00031 6.6E-09 57.2 13.5 104 43-158 115-221 (289)
133 PLN03098 LPA1 LOW PSII ACCUMUL 98.0 3.5E-05 7.5E-10 67.7 8.7 65 89-157 76-141 (453)
134 PLN03098 LPA1 LOW PSII ACCUMUL 98.0 2.6E-05 5.6E-10 68.5 7.8 68 7-77 73-141 (453)
135 PF12968 DUF3856: Domain of Un 98.0 0.0012 2.5E-08 47.7 14.3 107 49-155 7-127 (144)
136 PLN03077 Protein ECB2; Provisi 97.9 0.0011 2.3E-08 64.2 19.0 123 51-188 556-680 (857)
137 COG4783 Putative Zn-dependent 97.9 0.0011 2.4E-08 58.4 17.1 136 51-203 308-448 (484)
138 PF13176 TPR_7: Tetratricopept 97.9 3.2E-05 6.9E-10 43.9 4.5 31 90-120 1-31 (36)
139 PRK15331 chaperone protein Sic 97.9 0.00062 1.4E-08 52.1 12.6 105 42-158 30-135 (165)
140 PRK10153 DNA-binding transcrip 97.9 0.00074 1.6E-08 61.5 15.3 116 25-157 358-482 (517)
141 PLN02789 farnesyltranstransfer 97.9 0.00094 2E-08 57.2 15.1 126 14-157 42-171 (320)
142 PF13176 TPR_7: Tetratricopept 97.8 5.9E-05 1.3E-09 42.8 5.2 33 11-43 1-33 (36)
143 PRK10866 outer membrane biogen 97.8 0.0029 6.4E-08 52.0 17.2 141 7-153 67-237 (243)
144 PF13525 YfiO: Outer membrane 97.8 0.0038 8.3E-08 49.8 17.5 137 7-149 40-199 (203)
145 PF12569 NARP1: NMDA receptor- 97.8 0.0014 3.1E-08 59.5 16.3 133 8-156 193-333 (517)
146 KOG4234 TPR repeat-containing 97.8 0.00039 8.5E-09 54.8 10.8 106 47-159 93-200 (271)
147 PF09986 DUF2225: Uncharacteri 97.8 0.00066 1.4E-08 54.7 12.5 96 22-117 90-194 (214)
148 KOG1156 N-terminal acetyltrans 97.8 0.00071 1.5E-08 61.4 13.7 127 11-155 43-170 (700)
149 KOG3617 WD40 and TPR repeat-co 97.8 0.0026 5.7E-08 59.6 17.3 113 10-122 859-1007(1416)
150 PF10345 Cohesin_load: Cohesin 97.8 0.0085 1.8E-07 55.8 20.9 187 4-191 54-251 (608)
151 PF12968 DUF3856: Domain of Un 97.7 0.0046 9.9E-08 44.7 14.5 114 6-120 4-132 (144)
152 KOG1174 Anaphase-promoting com 97.7 0.0025 5.4E-08 55.4 15.5 164 10-191 302-497 (564)
153 KOG1127 TPR repeat-containing 97.7 0.00038 8.3E-09 65.9 11.3 137 7-155 490-657 (1238)
154 KOG1128 Uncharacterized conser 97.7 0.0011 2.3E-08 61.1 13.7 162 15-191 404-579 (777)
155 COG4783 Putative Zn-dependent 97.7 0.0028 6E-08 56.0 15.7 123 15-155 312-435 (484)
156 PF14559 TPR_19: Tetratricopep 97.7 0.00015 3.3E-09 46.9 5.9 53 98-156 1-53 (68)
157 PF13371 TPR_9: Tetratricopept 97.7 0.00016 3.5E-09 47.4 6.1 57 95-157 2-58 (73)
158 PF04190 DUF410: Protein of un 97.7 0.023 5.1E-07 47.2 20.4 192 3-195 4-223 (260)
159 PF09986 DUF2225: Uncharacteri 97.7 0.0017 3.6E-08 52.4 12.9 99 62-160 91-197 (214)
160 PF10602 RPN7: 26S proteasome 97.7 0.0032 6.9E-08 49.2 14.1 111 5-118 32-143 (177)
161 PLN02789 farnesyltranstransfer 97.6 0.0058 1.3E-07 52.3 16.5 96 9-116 71-170 (320)
162 KOG2376 Signal recognition par 97.6 0.0046 9.9E-08 55.8 16.1 87 88-174 175-270 (652)
163 COG1729 Uncharacterized protei 97.6 0.00077 1.7E-08 55.4 10.5 98 52-155 144-242 (262)
164 KOG1070 rRNA processing protei 97.6 0.0066 1.4E-07 59.7 17.9 192 3-213 1453-1651(1710)
165 PF03704 BTAD: Bacterial trans 97.6 0.0031 6.7E-08 47.3 13.1 113 14-155 11-123 (146)
166 PF09295 ChAPs: ChAPs (Chs5p-A 97.6 0.0027 5.8E-08 55.8 14.0 124 58-200 178-304 (395)
167 PRK15331 chaperone protein Sic 97.6 0.0018 4E-08 49.5 11.2 97 8-116 36-133 (165)
168 PF11817 Foie-gras_1: Foie gra 97.6 0.0018 3.9E-08 53.4 12.1 91 63-153 153-243 (247)
169 KOG1174 Anaphase-promoting com 97.6 0.0014 3E-08 56.9 11.6 134 11-157 336-500 (564)
170 PF13371 TPR_9: Tetratricopept 97.6 0.00033 7.1E-09 46.0 6.3 57 56-118 2-59 (73)
171 COG2976 Uncharacterized protei 97.6 0.024 5.2E-07 44.6 17.3 101 47-157 87-188 (207)
172 KOG0624 dsRNA-activated protei 97.5 0.013 2.9E-07 49.9 16.9 145 34-191 24-181 (504)
173 PF12569 NARP1: NMDA receptor- 97.5 0.003 6.6E-08 57.4 14.0 134 45-190 190-330 (517)
174 PF04733 Coatomer_E: Coatomer 97.5 0.0022 4.8E-08 54.1 12.0 151 12-191 105-262 (290)
175 PF03704 BTAD: Bacterial trans 97.5 0.0031 6.7E-08 47.3 11.7 107 56-191 13-122 (146)
176 COG2909 MalT ATP-dependent tra 97.5 0.025 5.4E-07 53.5 19.5 183 3-191 454-644 (894)
177 COG0457 NrfG FOG: TPR repeat [ 97.5 0.015 3.4E-07 44.4 15.9 87 61-155 143-229 (291)
178 PF11817 Foie-gras_1: Foie gra 97.5 0.0045 9.7E-08 51.0 13.0 93 23-115 152-245 (247)
179 KOG4340 Uncharacterized conser 97.5 0.0048 1E-07 51.7 13.0 181 11-198 46-277 (459)
180 KOG3617 WD40 and TPR repeat-co 97.5 0.007 1.5E-07 56.8 15.2 143 12-154 970-1171(1416)
181 PF14559 TPR_19: Tetratricopep 97.5 0.00019 4E-09 46.4 3.9 51 61-117 4-54 (68)
182 COG4700 Uncharacterized protei 97.4 0.0042 9.2E-08 48.6 11.8 132 13-160 60-193 (251)
183 COG4700 Uncharacterized protei 97.4 0.025 5.5E-07 44.4 15.9 116 62-191 70-186 (251)
184 COG0457 NrfG FOG: TPR repeat [ 97.4 0.034 7.3E-07 42.5 17.3 167 9-191 59-228 (291)
185 PRK10153 DNA-binding transcrip 97.4 0.014 3E-07 53.3 16.7 123 62-199 356-488 (517)
186 KOG3616 Selective LIM binding 97.4 0.0061 1.3E-07 56.7 14.1 131 9-154 661-817 (1636)
187 PF00515 TPR_1: Tetratricopept 97.4 0.00051 1.1E-08 38.0 4.8 30 9-38 1-30 (34)
188 COG2976 Uncharacterized protei 97.4 0.025 5.4E-07 44.5 15.5 104 83-194 84-188 (207)
189 KOG4162 Predicted calmodulin-b 97.4 0.014 3E-07 54.3 16.1 173 5-191 319-504 (799)
190 KOG4234 TPR repeat-containing 97.4 0.0025 5.5E-08 50.4 9.9 102 9-117 95-197 (271)
191 PF10300 DUF3808: Protein of u 97.4 0.0066 1.4E-07 54.7 14.0 119 24-155 248-374 (468)
192 PF13512 TPR_18: Tetratricopep 97.4 0.0039 8.6E-08 46.6 10.5 89 49-143 10-99 (142)
193 PF00515 TPR_1: Tetratricopept 97.3 0.00066 1.4E-08 37.5 4.7 29 89-117 2-30 (34)
194 COG1729 Uncharacterized protei 97.3 0.0038 8.3E-08 51.4 10.9 101 11-118 144-245 (262)
195 KOG0624 dsRNA-activated protei 97.3 0.036 7.9E-07 47.4 16.8 142 11-158 40-219 (504)
196 PF13374 TPR_10: Tetratricopep 97.3 0.00077 1.7E-08 38.9 5.0 34 9-42 2-35 (42)
197 PF13374 TPR_10: Tetratricopep 97.3 0.00068 1.5E-08 39.1 4.7 34 88-121 2-35 (42)
198 KOG1463 26S proteasome regulat 97.3 0.056 1.2E-06 46.1 17.3 189 10-199 49-245 (411)
199 KOG1156 N-terminal acetyltrans 97.2 0.016 3.4E-07 53.0 14.8 157 12-191 11-169 (700)
200 COG4235 Cytochrome c biogenesi 97.2 0.014 3E-07 48.7 13.5 93 51-155 158-254 (287)
201 PRK11906 transcriptional regul 97.2 0.024 5.1E-07 50.3 15.2 146 25-187 274-429 (458)
202 KOG2300 Uncharacterized conser 97.2 0.033 7.1E-07 49.6 15.9 178 11-191 325-511 (629)
203 PF07719 TPR_2: Tetratricopept 97.2 0.0012 2.6E-08 36.3 4.8 31 9-39 1-31 (34)
204 KOG0551 Hsp90 co-chaperone CNS 97.2 0.012 2.6E-07 49.9 12.4 113 35-155 67-180 (390)
205 COG3071 HemY Uncharacterized e 97.1 0.015 3.2E-07 50.3 12.7 117 18-155 272-388 (400)
206 KOG2376 Signal recognition par 97.1 0.094 2E-06 47.7 18.0 133 61-202 92-262 (652)
207 PF07719 TPR_2: Tetratricopept 97.1 0.0016 3.5E-08 35.8 4.7 29 89-117 2-30 (34)
208 KOG1127 TPR repeat-containing 97.1 0.02 4.3E-07 54.8 14.1 134 49-196 492-628 (1238)
209 PF10300 DUF3808: Protein of u 97.1 0.041 8.9E-07 49.7 15.9 170 21-205 200-382 (468)
210 KOG0551 Hsp90 co-chaperone CNS 97.0 0.0091 2E-07 50.6 10.6 108 3-118 75-183 (390)
211 PF08631 SPO22: Meiosis protei 97.0 0.15 3.3E-06 42.7 20.6 133 20-157 4-150 (278)
212 PF10345 Cohesin_load: Cohesin 97.0 0.076 1.7E-06 49.5 17.9 145 44-191 54-205 (608)
213 KOG3060 Uncharacterized conser 97.0 0.13 2.9E-06 42.2 16.6 157 13-191 56-217 (289)
214 PF13181 TPR_8: Tetratricopept 97.0 0.0025 5.5E-08 35.0 4.8 30 10-39 2-31 (34)
215 PF05843 Suf: Suppressor of fo 96.9 0.027 5.9E-07 47.3 12.4 131 11-156 3-135 (280)
216 PF13181 TPR_8: Tetratricopept 96.9 0.0034 7.3E-08 34.5 4.6 30 89-118 2-31 (34)
217 KOG2047 mRNA splicing factor [ 96.8 0.11 2.4E-06 47.8 16.4 187 5-191 244-451 (835)
218 KOG2300 Uncharacterized conser 96.8 0.33 7.1E-06 43.5 20.7 168 21-191 287-471 (629)
219 KOG2581 26S proteasome regulat 96.8 0.11 2.3E-06 45.4 15.5 175 8-191 168-343 (493)
220 PF04733 Coatomer_E: Coatomer 96.8 0.035 7.6E-07 46.9 12.2 125 11-155 133-263 (290)
221 COG4235 Cytochrome c biogenesi 96.8 0.018 4E-07 48.0 10.2 100 7-118 154-257 (287)
222 KOG1070 rRNA processing protei 96.8 0.16 3.4E-06 50.6 17.6 156 11-191 1502-1660(1710)
223 KOG1464 COP9 signalosome, subu 96.8 0.14 2.9E-06 42.7 14.9 182 10-191 66-329 (440)
224 KOG0495 HAT repeat protein [RN 96.8 0.036 7.8E-07 51.0 12.6 143 33-191 635-779 (913)
225 COG2909 MalT ATP-dependent tra 96.7 0.4 8.6E-06 45.8 19.3 181 6-190 494-684 (894)
226 KOG2796 Uncharacterized conser 96.7 0.062 1.3E-06 44.4 12.5 137 12-159 180-318 (366)
227 PF13512 TPR_18: Tetratricopep 96.7 0.074 1.6E-06 39.8 11.8 89 9-103 10-99 (142)
228 COG0790 FOG: TPR repeat, SEL1 96.6 0.087 1.9E-06 44.1 13.8 17 63-79 128-144 (292)
229 KOG4648 Uncharacterized conser 96.6 0.0093 2E-07 50.9 7.6 93 53-157 101-194 (536)
230 KOG3616 Selective LIM binding 96.6 0.065 1.4E-06 50.2 13.3 63 92-154 710-791 (1636)
231 KOG4340 Uncharacterized conser 96.6 0.025 5.4E-07 47.5 9.7 154 22-191 23-204 (459)
232 KOG0545 Aryl-hydrocarbon recep 96.6 0.15 3.4E-06 41.7 13.9 105 47-157 176-293 (329)
233 PF04184 ST7: ST7 protein; In 96.4 0.15 3.2E-06 45.7 14.1 125 20-155 179-322 (539)
234 KOG3081 Vesicle coat complex C 96.4 0.47 1E-05 39.3 16.1 111 62-191 151-268 (299)
235 PF08626 TRAPPC9-Trs120: Trans 96.4 0.17 3.7E-06 50.9 15.9 142 6-147 239-464 (1185)
236 PF13428 TPR_14: Tetratricopep 96.3 0.013 2.8E-07 34.5 4.9 28 90-117 3-30 (44)
237 KOG1464 COP9 signalosome, subu 96.3 0.085 1.8E-06 43.9 11.0 131 23-155 41-172 (440)
238 PF13431 TPR_17: Tetratricopep 96.3 0.0047 1E-07 34.4 2.6 33 110-148 1-33 (34)
239 KOG1839 Uncharacterized protei 96.3 0.058 1.3E-06 53.1 11.5 152 5-157 969-1128(1236)
240 COG4105 ComL DNA uptake lipopr 96.3 0.52 1.1E-05 38.8 20.6 171 10-187 35-226 (254)
241 PF13431 TPR_17: Tetratricopep 96.3 0.003 6.4E-08 35.2 1.8 34 70-109 1-34 (34)
242 COG3071 HemY Uncharacterized e 96.3 0.7 1.5E-05 40.2 17.0 129 9-154 84-213 (400)
243 PF04184 ST7: ST7 protein; In 96.1 0.45 9.8E-06 42.7 15.5 124 24-155 215-373 (539)
244 KOG4648 Uncharacterized conser 96.1 0.027 5.8E-07 48.2 7.6 97 9-117 97-194 (536)
245 PRK11906 transcriptional regul 96.1 0.33 7.2E-06 43.2 14.7 127 9-153 295-432 (458)
246 KOG4642 Chaperone-dependent E3 96.1 0.078 1.7E-06 43.2 9.9 93 17-121 18-111 (284)
247 KOG4642 Chaperone-dependent E3 96.1 0.034 7.5E-07 45.2 7.8 95 49-155 10-105 (284)
248 KOG4507 Uncharacterized conser 96.1 0.011 2.4E-07 53.6 5.5 115 32-157 589-705 (886)
249 KOG0495 HAT repeat protein [RN 96.1 0.91 2E-05 42.3 17.2 60 90-155 653-712 (913)
250 PF10579 Rapsyn_N: Rapsyn N-te 96.0 0.099 2.1E-06 34.9 8.4 70 52-124 9-79 (80)
251 PF02259 FAT: FAT domain; Int 96.0 0.56 1.2E-05 40.0 15.6 128 5-140 142-304 (352)
252 PF13174 TPR_6: Tetratricopept 95.9 0.019 4.2E-07 31.0 4.0 28 90-117 2-29 (33)
253 KOG1463 26S proteasome regulat 95.9 0.46 9.9E-06 40.7 13.6 176 14-191 133-310 (411)
254 KOG0687 26S proteasome regulat 95.9 0.82 1.8E-05 39.0 15.0 115 6-122 101-215 (393)
255 PF04190 DUF410: Protein of un 95.8 0.34 7.4E-06 40.2 12.8 114 22-154 3-116 (260)
256 KOG2471 TPR repeat-containing 95.8 0.025 5.4E-07 50.4 6.2 85 50-140 284-381 (696)
257 KOG3785 Uncharacterized conser 95.8 0.21 4.5E-06 43.1 11.4 129 14-155 62-212 (557)
258 PF08631 SPO22: Meiosis protei 95.6 0.83 1.8E-05 38.2 14.6 89 61-149 6-105 (278)
259 KOG4814 Uncharacterized conser 95.6 0.17 3.6E-06 46.6 10.6 98 52-155 358-455 (872)
260 PF10516 SHNi-TPR: SHNi-TPR; 95.5 0.035 7.6E-07 31.7 4.1 32 89-120 2-33 (38)
261 KOG1550 Extracellular protein 95.5 0.45 9.8E-06 43.9 13.6 114 25-155 228-355 (552)
262 KOG1839 Uncharacterized protei 95.5 0.32 7E-06 48.1 13.0 184 7-191 930-1125(1236)
263 PF06552 TOM20_plant: Plant sp 95.4 0.2 4.4E-06 39.0 9.3 68 88-155 25-100 (186)
264 KOG2471 TPR repeat-containing 95.4 0.052 1.1E-06 48.4 6.6 98 61-159 253-366 (696)
265 KOG2796 Uncharacterized conser 95.4 0.31 6.6E-06 40.5 10.5 101 11-117 214-315 (366)
266 COG0790 FOG: TPR repeat, SEL1 95.3 1.4 3.1E-05 36.7 18.7 95 50-155 110-218 (292)
267 COG4649 Uncharacterized protei 95.1 1.1 2.3E-05 35.0 12.1 149 19-174 49-215 (221)
268 KOG1550 Extracellular protein 95.0 0.49 1.1E-05 43.7 12.3 131 9-156 244-392 (552)
269 KOG0686 COP9 signalosome, subu 95.0 2.2 4.9E-05 37.5 16.1 177 28-207 129-315 (466)
270 COG4785 NlpI Lipoprotein NlpI, 95.0 0.31 6.7E-06 39.3 9.4 94 5-110 61-155 (297)
271 PF13428 TPR_14: Tetratricopep 95.0 0.071 1.5E-06 31.2 4.6 29 52-80 4-33 (44)
272 KOG3024 Uncharacterized conser 95.0 1.8 4E-05 36.1 20.5 194 2-195 19-265 (312)
273 COG5159 RPN6 26S proteasome re 94.9 2.1 4.5E-05 36.1 16.7 188 10-198 46-241 (421)
274 PF13174 TPR_6: Tetratricopept 94.8 0.042 9E-07 29.6 3.1 28 52-79 3-31 (33)
275 PF12739 TRAPPC-Trs85: ER-Golg 94.8 2.7 5.9E-05 37.3 16.3 107 11-117 210-329 (414)
276 smart00028 TPR Tetratricopepti 94.7 0.07 1.5E-06 27.4 3.8 28 90-117 3-30 (34)
277 KOG3785 Uncharacterized conser 94.6 0.53 1.2E-05 40.7 10.4 87 58-155 32-118 (557)
278 COG3118 Thioredoxin domain-con 94.5 2.5 5.5E-05 35.6 16.7 115 61-181 147-290 (304)
279 KOG0545 Aryl-hydrocarbon recep 94.4 0.79 1.7E-05 37.7 10.5 107 5-117 174-293 (329)
280 smart00028 TPR Tetratricopepti 94.3 0.07 1.5E-06 27.4 3.2 27 11-37 3-29 (34)
281 KOG2047 mRNA splicing factor [ 94.3 2 4.4E-05 40.0 14.0 142 8-156 424-578 (835)
282 PF07721 TPR_4: Tetratricopept 94.0 0.085 1.8E-06 27.2 2.9 23 130-152 3-25 (26)
283 PF10516 SHNi-TPR: SHNi-TPR; 94.0 0.17 3.6E-06 28.9 4.3 29 51-79 3-32 (38)
284 KOG2041 WD40 repeat protein [G 93.8 1.9 4.2E-05 40.5 12.8 33 83-115 791-823 (1189)
285 KOG1308 Hsp70-interacting prot 93.8 0.022 4.8E-07 48.5 0.6 90 55-156 121-210 (377)
286 COG4785 NlpI Lipoprotein NlpI, 93.7 0.2 4.4E-06 40.4 5.8 99 45-155 61-160 (297)
287 PF04781 DUF627: Protein of un 93.7 0.96 2.1E-05 32.4 8.6 93 16-116 3-106 (111)
288 PF08626 TRAPPC9-Trs120: Trans 93.6 2.4 5.2E-05 42.9 14.5 146 46-191 239-471 (1185)
289 PF13281 DUF4071: Domain of un 93.3 4.1 8.9E-05 35.7 13.7 134 12-157 182-334 (374)
290 KOG4322 Anaphase-promoting com 93.3 0.78 1.7E-05 40.4 9.2 141 15-155 279-426 (482)
291 KOG1915 Cell cycle control pro 93.3 6.1 0.00013 35.7 15.4 154 21-191 378-533 (677)
292 KOG2908 26S proteasome regulat 93.1 5.2 0.00011 34.4 17.6 170 18-191 84-259 (380)
293 PF05843 Suf: Suppressor of fo 92.9 4.9 0.00011 33.6 14.4 127 51-191 3-133 (280)
294 PF07721 TPR_4: Tetratricopept 92.8 0.18 4E-06 25.9 3.0 23 90-112 3-25 (26)
295 KOG2581 26S proteasome regulat 92.7 6.8 0.00015 34.6 14.7 147 9-158 124-278 (493)
296 PF14853 Fis1_TPR_C: Fis1 C-te 92.6 0.96 2.1E-05 27.8 6.5 28 90-117 3-30 (53)
297 KOG0687 26S proteasome regulat 92.4 6.4 0.00014 33.8 15.0 127 26-157 81-210 (393)
298 TIGR03504 FimV_Cterm FimV C-te 92.3 0.24 5.2E-06 29.3 3.4 23 133-155 4-26 (44)
299 PF11207 DUF2989: Protein of u 92.1 0.55 1.2E-05 37.3 6.2 57 49-107 141-197 (203)
300 PF06552 TOM20_plant: Plant sp 92.0 4.4 9.5E-05 31.7 10.8 67 49-121 25-106 (186)
301 KOG1538 Uncharacterized conser 91.9 2.5 5.4E-05 39.5 10.8 24 11-34 647-670 (1081)
302 KOG4507 Uncharacterized conser 91.8 0.2 4.4E-06 45.8 3.8 94 13-117 611-705 (886)
303 KOG1538 Uncharacterized conser 91.4 8.3 0.00018 36.2 13.6 73 32-111 648-726 (1081)
304 PRK13184 pknD serine/threonine 91.3 0.9 1.9E-05 44.4 7.9 92 61-155 488-579 (932)
305 PF11207 DUF2989: Protein of u 91.3 4.6 0.0001 32.1 10.6 119 27-148 59-198 (203)
306 KOG4014 Uncharacterized conser 91.1 5.7 0.00012 31.4 10.6 89 20-116 38-140 (248)
307 COG5159 RPN6 26S proteasome re 90.7 9.4 0.0002 32.3 14.0 174 15-191 131-308 (421)
308 cd02681 MIT_calpain7_1 MIT: do 90.7 3.5 7.6E-05 27.4 8.6 32 49-80 6-38 (76)
309 COG5187 RPN7 26S proteasome re 90.7 9.5 0.00021 32.3 15.2 117 5-124 111-228 (412)
310 PF10373 EST1_DNA_bind: Est1 D 90.6 0.78 1.7E-05 37.9 6.1 42 28-75 1-43 (278)
311 PF12739 TRAPPC-Trs85: ER-Golg 90.4 11 0.00023 33.6 13.5 105 51-155 210-327 (414)
312 KOG2114 Vacuolar assembly/sort 90.3 3.9 8.5E-05 39.1 10.7 50 30-79 348-399 (933)
313 PF04053 Coatomer_WDAD: Coatom 90.3 9.3 0.0002 34.4 13.0 40 72-115 335-374 (443)
314 KOG2041 WD40 repeat protein [G 90.3 4.8 0.0001 38.0 11.1 107 7-114 794-936 (1189)
315 cd02681 MIT_calpain7_1 MIT: do 90.3 3.1 6.7E-05 27.6 7.5 35 7-41 4-38 (76)
316 KOG2610 Uncharacterized conser 90.1 1.9 4.2E-05 37.1 7.9 93 16-116 182-275 (491)
317 PF14853 Fis1_TPR_C: Fis1 C-te 89.8 1.4 3.1E-05 27.1 5.2 43 130-174 3-45 (53)
318 PF10579 Rapsyn_N: Rapsyn N-te 89.7 4.5 9.7E-05 27.1 8.2 74 8-84 5-79 (80)
319 PF04212 MIT: MIT (microtubule 89.7 1.7 3.6E-05 28.1 5.9 31 50-80 6-37 (69)
320 TIGR03504 FimV_Cterm FimV C-te 89.5 0.72 1.6E-05 27.2 3.6 25 92-116 3-27 (44)
321 PF10952 DUF2753: Protein of u 89.4 3.9 8.4E-05 29.9 7.9 31 13-43 5-35 (140)
322 KOG4322 Anaphase-promoting com 89.2 4.4 9.6E-05 35.9 9.6 148 7-155 311-469 (482)
323 PRK10941 hypothetical protein; 89.2 7.7 0.00017 32.4 10.8 91 77-176 170-261 (269)
324 cd02679 MIT_spastin MIT: domai 89.2 1.5 3.3E-05 29.4 5.4 34 48-81 7-41 (79)
325 COG5091 SGT1 Suppressor of G2 89.1 1.6 3.4E-05 36.3 6.4 94 49-142 36-133 (368)
326 PF15015 NYD-SP12_N: Spermatog 89.1 3.8 8.2E-05 36.4 9.1 99 51-155 179-289 (569)
327 KOG0376 Serine-threonine phosp 89.0 0.45 9.8E-06 42.4 3.5 83 61-155 17-99 (476)
328 PF04212 MIT: MIT (microtubule 88.9 1.4 3E-05 28.5 5.0 22 99-120 16-37 (69)
329 cd02682 MIT_AAA_Arch MIT: doma 88.8 1.6 3.4E-05 29.0 5.2 34 8-41 5-38 (75)
330 PF05053 Menin: Menin; InterP 88.6 17 0.00036 33.6 13.0 102 24-126 252-356 (618)
331 KOG1308 Hsp70-interacting prot 88.5 0.32 7E-06 41.6 2.2 98 8-117 113-211 (377)
332 KOG1915 Cell cycle control pro 88.5 19 0.00041 32.7 17.5 159 20-191 333-497 (677)
333 smart00745 MIT Microtubule Int 88.1 2.3 5E-05 28.0 5.9 20 61-80 21-40 (77)
334 PF10952 DUF2753: Protein of u 88.1 8.5 0.00018 28.2 9.8 87 52-138 4-103 (140)
335 KOG0686 COP9 signalosome, subu 87.7 6.1 0.00013 34.8 9.4 87 69-158 131-217 (466)
336 PF15015 NYD-SP12_N: Spermatog 87.6 13 0.00029 33.1 11.4 105 11-122 179-296 (569)
337 cd02679 MIT_spastin MIT: domai 87.4 1.7 3.8E-05 29.1 4.8 35 5-39 4-38 (79)
338 COG4976 Predicted methyltransf 87.3 1.1 2.5E-05 36.4 4.5 56 97-158 4-59 (287)
339 PRK13184 pknD serine/threonine 87.1 3.5 7.6E-05 40.5 8.5 91 24-118 483-582 (932)
340 PF04053 Coatomer_WDAD: Coatom 86.9 13 0.00028 33.4 11.5 102 52-181 298-405 (443)
341 KOG3081 Vesicle coat complex C 86.7 13 0.00029 31.0 10.4 132 11-152 110-265 (299)
342 PF04910 Tcf25: Transcriptiona 86.7 21 0.00045 31.2 15.7 140 9-155 40-220 (360)
343 KOG0985 Vesicle coat protein c 86.6 20 0.00044 35.6 12.9 148 30-204 1062-1234(1666)
344 cd02682 MIT_AAA_Arch MIT: doma 86.2 2.7 5.7E-05 27.9 5.1 34 48-81 5-39 (75)
345 cd02678 MIT_VPS4 MIT: domain c 86.2 3.5 7.5E-05 27.2 5.8 20 61-80 19-38 (75)
346 KOG4814 Uncharacterized conser 85.9 31 0.00068 32.5 18.4 99 90-191 356-454 (872)
347 KOG2908 26S proteasome regulat 85.9 22 0.00048 30.7 19.2 160 62-221 89-261 (380)
348 PF14561 TPR_20: Tetratricopep 85.3 9.7 0.00021 26.1 9.2 57 125-181 19-76 (90)
349 PF10255 Paf67: RNA polymerase 85.1 6.9 0.00015 34.7 8.6 66 89-155 123-191 (404)
350 cd02683 MIT_1 MIT: domain cont 85.1 2.7 5.9E-05 27.9 4.9 30 51-80 8-38 (77)
351 COG2178 Predicted RNA-binding 85.0 17 0.00038 28.7 11.8 65 91-155 32-96 (204)
352 PF12854 PPR_1: PPR repeat 84.8 2 4.3E-05 23.5 3.5 25 89-113 8-32 (34)
353 cd02683 MIT_1 MIT: domain cont 84.4 3.7 8E-05 27.3 5.2 34 8-41 5-38 (77)
354 smart00671 SEL1 Sel1-like repe 84.2 2.2 4.8E-05 23.0 3.6 26 51-76 3-33 (36)
355 PF12854 PPR_1: PPR repeat 84.1 2.5 5.5E-05 23.1 3.7 26 128-153 7-32 (34)
356 smart00745 MIT Microtubule Int 84.0 3.4 7.3E-05 27.2 5.0 19 101-119 21-39 (77)
357 PF10373 EST1_DNA_bind: Est1 D 83.8 1.8 3.9E-05 35.7 4.4 49 7-61 14-62 (278)
358 cd02656 MIT MIT: domain contai 83.3 5.3 0.00011 26.1 5.7 19 62-80 20-38 (75)
359 KOG4521 Nuclear pore complex, 83.3 35 0.00076 34.4 12.9 108 15-151 926-1044(1480)
360 COG3898 Uncharacterized membra 82.8 34 0.00073 30.4 13.8 123 56-191 91-214 (531)
361 KOG3824 Huntingtin interacting 82.5 3.5 7.5E-05 35.2 5.5 67 7-80 115-182 (472)
362 COG5187 RPN7 26S proteasome re 81.8 32 0.00068 29.3 15.0 126 25-155 91-219 (412)
363 cd02678 MIT_VPS4 MIT: domain c 81.8 4.6 0.0001 26.6 4.9 22 99-120 17-38 (75)
364 COG3947 Response regulator con 81.7 7 0.00015 33.1 6.9 61 89-155 280-340 (361)
365 KOG3824 Huntingtin interacting 81.7 3.1 6.7E-05 35.5 4.9 65 48-118 116-180 (472)
366 KOG2561 Adaptor protein NUB1, 81.6 13 0.00029 33.1 8.9 105 51-155 165-294 (568)
367 cd02677 MIT_SNX15 MIT: domain 81.3 6 0.00013 26.2 5.3 20 61-80 19-38 (75)
368 cd02677 MIT_SNX15 MIT: domain 80.7 4.7 0.0001 26.7 4.6 21 100-120 18-38 (75)
369 KOG0376 Serine-threonine phosp 80.5 1.9 4.2E-05 38.5 3.5 97 9-117 4-101 (476)
370 PF02259 FAT: FAT domain; Int 79.7 36 0.00079 28.7 12.3 111 45-157 142-287 (352)
371 cd02656 MIT MIT: domain contai 79.6 5.7 0.00012 26.0 4.8 21 100-120 18-38 (75)
372 cd09240 BRO1_Alix Protein-inte 78.8 38 0.00082 29.3 11.0 37 5-41 115-160 (346)
373 cd02680 MIT_calpain7_2 MIT: do 78.8 16 0.00035 24.2 7.6 24 61-84 19-42 (75)
374 KOG3364 Membrane protein invol 78.4 26 0.00056 26.3 10.8 81 88-174 32-115 (149)
375 PF01535 PPR: PPR repeat; Int 78.4 4.1 8.8E-05 20.9 3.2 25 91-115 3-27 (31)
376 TIGR00756 PPR pentatricopeptid 76.4 6.1 0.00013 20.6 3.7 25 91-115 3-27 (35)
377 COG4105 ComL DNA uptake lipopr 76.3 43 0.00093 27.7 16.5 136 10-151 72-227 (254)
378 KOG1920 IkappaB kinase complex 75.9 26 0.00056 35.2 9.7 64 52-115 955-1026(1265)
379 cd09241 BRO1_ScRim20-like Prot 75.9 27 0.00059 30.3 9.3 37 5-41 102-147 (355)
380 cd02684 MIT_2 MIT: domain cont 75.7 9.6 0.00021 25.1 5.0 20 61-80 19-38 (75)
381 COG4976 Predicted methyltransf 75.5 5.6 0.00012 32.5 4.4 51 61-117 8-58 (287)
382 PF08238 Sel1: Sel1 repeat; I 75.2 9.5 0.00021 20.8 4.4 13 64-76 24-36 (39)
383 cd09247 BRO1_Alix_like_2 Prote 74.5 57 0.0012 28.3 13.1 38 4-41 108-152 (346)
384 cd09034 BRO1_Alix_like Protein 74.3 55 0.0012 28.1 11.8 37 5-41 107-153 (345)
385 PF13281 DUF4071: Domain of un 73.7 63 0.0014 28.4 16.3 174 12-199 144-339 (374)
386 PF12487 DUF3703: Protein of u 73.2 18 0.0004 25.9 6.2 87 132-222 13-100 (112)
387 cd02684 MIT_2 MIT: domain cont 73.0 15 0.00033 24.2 5.5 34 8-41 5-38 (75)
388 COG3629 DnrI DNA-binding trans 72.9 56 0.0012 27.5 12.6 61 89-155 154-214 (280)
389 PF13041 PPR_2: PPR repeat fam 72.8 17 0.00036 21.4 5.8 26 90-115 5-30 (50)
390 COG5091 SGT1 Suppressor of G2 72.5 17 0.00037 30.4 6.6 80 23-102 53-133 (368)
391 KOG2053 Mitochondrial inherita 72.2 49 0.0011 32.3 10.3 55 95-155 50-104 (932)
392 KOG2114 Vacuolar assembly/sort 72.0 22 0.00048 34.3 8.0 48 69-116 348-396 (933)
393 cd09239 BRO1_HD-PTP_like Prote 71.4 63 0.0014 28.2 10.4 37 5-41 110-155 (361)
394 PF13812 PPR_3: Pentatricopept 70.2 13 0.00028 19.4 4.0 26 90-115 3-28 (34)
395 PF10255 Paf67: RNA polymerase 70.2 32 0.00069 30.6 8.3 66 55-122 128-198 (404)
396 KOG0276 Vesicle coat complex C 70.2 11 0.00025 35.0 5.6 49 98-157 647-695 (794)
397 KOG3783 Uncharacterized conser 69.7 89 0.0019 28.8 11.0 115 30-154 250-372 (546)
398 PF07079 DUF1347: Protein of u 68.7 48 0.001 30.0 8.9 52 96-154 470-521 (549)
399 cd02680 MIT_calpain7_2 MIT: do 68.3 32 0.00069 22.8 8.7 34 9-42 6-39 (75)
400 cd09242 BRO1_ScBro1_like Prote 68.3 80 0.0017 27.4 12.8 37 5-41 103-148 (348)
401 PRK10941 hypothetical protein; 68.3 32 0.0007 28.7 7.6 73 41-119 173-246 (269)
402 KOG0546 HSP90 co-chaperone CPR 67.8 4.4 9.5E-05 35.0 2.4 101 51-157 224-338 (372)
403 PF14561 TPR_20: Tetratricopep 67.5 34 0.00073 23.3 6.4 52 89-144 23-74 (90)
404 KOG1497 COP9 signalosome, subu 67.5 82 0.0018 27.2 18.4 71 84-155 99-171 (399)
405 PF00244 14-3-3: 14-3-3 protei 67.2 48 0.001 27.1 8.4 54 65-119 143-200 (236)
406 KOG2053 Mitochondrial inherita 66.9 74 0.0016 31.1 10.3 27 90-116 79-105 (932)
407 cd09246 BRO1_Alix_like_1 Prote 66.4 88 0.0019 27.2 13.3 38 5-42 107-153 (353)
408 cd09243 BRO1_Brox_like Protein 66.3 90 0.002 27.2 13.4 36 5-40 105-152 (353)
409 PF13041 PPR_2: PPR repeat fam 66.2 11 0.00024 22.1 3.5 27 129-155 4-30 (50)
410 PF09670 Cas_Cas02710: CRISPR- 65.8 94 0.002 27.3 16.5 59 17-79 139-200 (379)
411 KOG1920 IkappaB kinase complex 65.3 1.6E+02 0.0036 29.9 13.3 67 92-158 956-1029(1265)
412 PF07079 DUF1347: Protein of u 64.7 1.1E+02 0.0024 27.8 19.1 50 137-191 471-521 (549)
413 KOG3024 Uncharacterized conser 64.2 89 0.0019 26.5 12.4 133 22-155 19-154 (312)
414 PF04781 DUF627: Protein of un 62.4 55 0.0012 23.4 10.5 98 57-157 4-107 (111)
415 PF03097 BRO1: BRO1-like domai 62.3 1.1E+02 0.0023 26.7 10.7 37 5-41 103-148 (377)
416 COG3629 DnrI DNA-binding trans 61.8 53 0.0012 27.6 7.7 64 48-117 152-216 (280)
417 KOG0276 Vesicle coat complex C 61.5 84 0.0018 29.6 9.3 65 90-154 668-747 (794)
418 PF04910 Tcf25: Transcriptiona 59.2 1.2E+02 0.0027 26.4 17.0 127 25-155 10-166 (360)
419 KOG4422 Uncharacterized conser 57.7 1.1E+02 0.0024 27.6 9.2 66 126-191 520-587 (625)
420 COG2178 Predicted RNA-binding 57.5 97 0.0021 24.7 10.7 52 61-112 42-93 (204)
421 PF05053 Menin: Menin; InterP 56.1 1.7E+02 0.0038 27.2 11.0 89 66-155 255-345 (618)
422 PF00244 14-3-3: 14-3-3 protei 54.9 72 0.0016 26.0 7.3 55 26-80 143-201 (236)
423 COG3118 Thioredoxin domain-con 54.8 1.3E+02 0.0029 25.5 11.8 113 19-142 144-286 (304)
424 PF03745 DUF309: Domain of unk 54.8 27 0.00058 22.1 3.8 57 95-151 6-62 (62)
425 KOG1914 mRNA cleavage and poly 54.8 1.8E+02 0.004 27.1 16.7 139 6-155 283-428 (656)
426 KOG1953 Targeting complex (TRA 54.3 8.5 0.00019 37.7 2.0 56 85-140 242-297 (1235)
427 PF07720 TPR_3: Tetratricopept 54.3 37 0.00079 18.9 4.7 22 12-33 4-25 (36)
428 KOG3364 Membrane protein invol 53.9 93 0.002 23.4 10.1 65 49-117 32-100 (149)
429 PF09613 HrpB1_HrpK: Bacterial 53.1 1E+02 0.0022 23.6 10.5 22 93-114 49-70 (160)
430 smart00101 14_3_3 14-3-3 homol 52.5 80 0.0017 26.0 7.2 51 26-76 145-199 (244)
431 KOG0985 Vesicle coat protein c 52.1 2.8E+02 0.006 28.3 15.4 93 12-119 1064-1164(1666)
432 KOG4014 Uncharacterized conser 50.6 1.3E+02 0.0028 24.0 7.8 89 100-191 39-138 (248)
433 PF12309 KBP_C: KIF-1 binding 49.8 1.8E+02 0.0039 25.5 14.8 128 27-154 149-328 (371)
434 KOG0890 Protein kinase of the 49.4 3.5E+02 0.0076 29.9 12.4 125 25-157 1645-1784(2382)
435 COG4649 Uncharacterized protei 49.2 1.3E+02 0.0028 23.8 14.6 153 33-191 17-193 (221)
436 KOG3783 Uncharacterized conser 47.1 2.4E+02 0.0052 26.1 12.9 76 83-158 444-521 (546)
437 cd09247 BRO1_Alix_like_2 Prote 46.4 2E+02 0.0042 25.0 13.4 50 106-155 214-280 (346)
438 PF09670 Cas_Cas02710: CRISPR- 46.1 2.1E+02 0.0045 25.2 10.2 22 99-120 252-273 (379)
439 PF04010 DUF357: Protein of un 45.1 43 0.00093 22.1 3.7 29 126-154 33-61 (75)
440 PHA02537 M terminase endonucle 43.8 66 0.0014 26.2 5.4 21 62-82 192-212 (230)
441 PF07219 HemY_N: HemY protein 42.7 88 0.0019 21.9 5.4 44 126-175 57-100 (108)
442 COG3947 Response regulator con 42.7 1.4E+02 0.003 25.6 7.1 61 53-119 283-344 (361)
443 TIGR02561 HrpB1_HrpK type III 41.9 1.5E+02 0.0033 22.5 12.8 109 89-207 11-119 (153)
444 PF04097 Nic96: Nup93/Nic96; 41.8 3.1E+02 0.0067 25.9 14.0 21 138-158 515-535 (613)
445 KOG2422 Uncharacterized conser 41.4 3.1E+02 0.0067 25.8 16.4 185 23-212 252-465 (665)
446 PF14689 SPOB_a: Sensor_kinase 40.9 91 0.002 19.5 4.9 25 131-155 26-50 (62)
447 COG1849 Uncharacterized protei 39.8 1.2E+02 0.0026 20.8 5.3 28 127-154 40-67 (90)
448 KOG2034 Vacuolar sorting prote 39.5 75 0.0016 31.0 5.7 57 14-79 363-420 (911)
449 PRK12798 chemotaxis protein; R 39.5 2.8E+02 0.0061 24.8 18.8 76 124-200 253-333 (421)
450 PF02064 MAS20: MAS20 protein 37.7 41 0.00089 24.5 3.0 27 92-118 67-93 (121)
451 KOG4521 Nuclear pore complex, 37.2 3.4E+02 0.0074 27.9 9.7 81 26-106 980-1072(1480)
452 KOG1310 WD40 repeat protein [G 37.0 2.1E+02 0.0045 26.8 7.7 89 58-155 384-472 (758)
453 PF11846 DUF3366: Domain of un 36.9 2E+02 0.0043 22.3 7.5 30 90-119 146-175 (193)
454 KOG2062 26S proteasome regulat 36.8 3.8E+02 0.0082 26.1 9.6 25 131-155 213-237 (929)
455 smart00101 14_3_3 14-3-3 homol 36.7 2.4E+02 0.0052 23.2 9.8 54 64-118 144-201 (244)
456 KOG1497 COP9 signalosome, subu 36.3 2.9E+02 0.0063 24.0 17.3 108 7-115 101-211 (399)
457 PF10607 CLTH: CTLH/CRA C-term 36.0 1.6E+02 0.0035 21.4 6.2 55 21-75 13-67 (145)
458 PF10938 YfdX: YfdX protein; 35.6 1.9E+02 0.0042 21.8 9.8 102 54-155 7-144 (155)
459 PF11846 DUF3366: Domain of un 35.5 2.1E+02 0.0045 22.1 7.3 55 100-158 120-174 (193)
460 KOG2709 Uncharacterized conser 35.1 64 0.0014 28.8 4.2 32 49-80 22-54 (560)
461 cd09245 BRO1_UmRIM23-like Prot 34.0 2E+02 0.0044 25.6 7.4 36 89-124 297-332 (413)
462 KOG0292 Vesicle coat complex C 33.9 4.8E+02 0.011 26.1 9.9 40 72-115 660-699 (1202)
463 KOG1953 Targeting complex (TRA 33.8 32 0.00069 34.0 2.4 49 48-96 244-293 (1235)
464 cd09243 BRO1_Brox_like Protein 33.4 2.4E+02 0.0052 24.6 7.6 14 66-79 212-225 (353)
465 KOG2034 Vacuolar sorting prote 33.3 90 0.002 30.5 5.2 51 57-116 366-417 (911)
466 PF02064 MAS20: MAS20 protein 33.2 94 0.002 22.6 4.3 26 55-80 69-95 (121)
467 KOG0739 AAA+-type ATPase [Post 32.6 83 0.0018 27.1 4.4 16 22-37 23-38 (439)
468 cd09245 BRO1_UmRIM23-like Prot 32.2 2.3E+02 0.0051 25.3 7.5 37 4-40 112-174 (413)
469 KOG4563 Cell cycle-regulated h 31.6 1.6E+02 0.0034 25.9 6.0 62 89-150 42-105 (400)
470 PF08311 Mad3_BUB1_I: Mad3/BUB 31.3 2E+02 0.0044 20.8 12.7 118 27-155 3-126 (126)
471 KOG0890 Protein kinase of the 31.2 6.5E+02 0.014 28.1 11.1 88 62-157 1643-1731(2382)
472 PF05470 eIF-3c_N: Eukaryotic 31.0 4.6E+02 0.01 24.8 13.6 123 68-190 369-525 (595)
473 COG3898 Uncharacterized membra 30.8 4E+02 0.0087 24.0 18.4 18 22-39 97-114 (531)
474 PF09613 HrpB1_HrpK: Bacterial 30.7 2.5E+02 0.0054 21.5 11.9 110 88-207 10-119 (160)
475 PHA02537 M terminase endonucle 30.5 3E+02 0.0065 22.5 10.9 97 62-159 97-209 (230)
476 KOG4563 Cell cycle-regulated h 30.5 2.8E+02 0.0061 24.4 7.3 28 11-38 43-70 (400)
477 KOG2709 Uncharacterized conser 30.4 81 0.0018 28.2 4.1 35 6-40 19-53 (560)
478 KOG1811 Predicted Zn2+-binding 30.2 2.3E+02 0.005 26.9 7.0 50 109-160 570-619 (1141)
479 KOG2610 Uncharacterized conser 30.0 3.9E+02 0.0084 23.6 16.6 98 55-160 110-207 (491)
480 cd09240 BRO1_Alix Protein-inte 29.8 2.5E+02 0.0055 24.3 7.2 12 68-79 219-230 (346)
481 PRK12798 chemotaxis protein; R 29.6 3.2E+02 0.0068 24.5 7.6 91 99-195 123-215 (421)
482 PF08969 USP8_dimer: USP8 dime 29.5 1.5E+02 0.0032 21.0 4.8 28 51-78 40-68 (115)
483 COG2912 Uncharacterized conser 29.3 3.2E+02 0.0068 22.9 7.2 67 86-158 179-246 (269)
484 TIGR02710 CRISPR-associated pr 29.1 4.1E+02 0.0088 23.5 14.8 54 18-72 139-195 (380)
485 COG1516 FliS Flagellin-specifi 28.9 2.3E+02 0.005 21.0 5.7 23 59-81 42-64 (132)
486 cd09034 BRO1_Alix_like Protein 28.7 3.7E+02 0.008 22.9 12.9 50 106-155 211-278 (345)
487 PF08969 USP8_dimer: USP8 dime 28.5 2.1E+02 0.0047 20.1 5.6 36 5-40 34-69 (115)
488 TIGR02561 HrpB1_HrpK type III 28.4 2.7E+02 0.0058 21.2 9.5 84 49-144 10-94 (153)
489 PF14716 HHH_8: Helix-hairpin- 27.1 86 0.0019 19.9 2.9 48 166-213 5-56 (68)
490 KOG2561 Adaptor protein NUB1, 27.0 4.9E+02 0.011 23.7 12.1 112 11-122 165-301 (568)
491 cd09244 BRO1_Rhophilin Protein 26.8 4.3E+02 0.0093 23.0 11.6 37 5-41 102-147 (350)
492 cd09242 BRO1_ScBro1_like Prote 26.1 4.3E+02 0.0094 22.8 13.8 33 47-79 105-147 (348)
493 PF12753 Nro1: Nuclear pore co 25.8 1.2E+02 0.0027 26.8 4.4 33 66-98 329-367 (404)
494 KOG0546 HSP90 co-chaperone CPR 25.8 76 0.0017 27.7 3.1 104 7-116 220-337 (372)
495 PRK09591 celC cellobiose phosp 25.8 2.4E+02 0.0053 19.8 5.3 16 22-37 33-48 (104)
496 COG5290 IkappaB kinase complex 25.8 6.4E+02 0.014 25.0 9.2 55 23-77 898-964 (1243)
497 PF07575 Nucleopor_Nup85: Nup8 25.6 1.9E+02 0.0042 26.8 6.1 46 71-116 408-453 (566)
498 PF02255 PTS_IIA: PTS system, 25.2 2.4E+02 0.0051 19.5 5.5 31 9-39 14-44 (96)
499 COG3014 Uncharacterized protei 25.1 4.8E+02 0.01 23.0 8.5 30 54-83 63-93 (449)
500 PRK10454 PTS system N,N'-diace 25.0 2.6E+02 0.0056 20.2 5.3 36 7-42 29-64 (115)
No 1
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=99.97 E-value=2.5e-30 Score=216.95 Aligned_cols=206 Identities=29% Similarity=0.371 Sum_probs=182.0
Q ss_pred CCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh-h-CCHHHHHHHHHHHHHHHH
Q 026767 2 LSSPWDAAKHMESAAALAKELHNWREVADFYRKASELYNECGRSQPASDALAKAARALE-D-AVPEDAIQLYTDACIMLE 79 (233)
Q Consensus 2 ~~~~~~~a~~~~~~g~~~~~~g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~-~-g~~~~A~~~~~~Al~~~~ 79 (233)
+++++.++++|.+++.+|+.. ++++|+.+|++|+.+|...|++..+|.++.++|.+|+ . |++++|+++|++|+++|+
T Consensus 68 ~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~ 146 (282)
T PF14938_consen 68 LGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREAGRFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYE 146 (282)
T ss_dssp TT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 578999999999999999976 9999999999999999999999999999999999999 7 899999999999999999
Q ss_pred hcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHccCcchHHH-hHHHHHHHHHhhCCHHHHHHHHHHhh-cC
Q 026767 80 EDDKEQMAFDLYRAATNVYIKLEKYADAATFLLRWGLAADKCNATNSQCK-AYLSAIIVYLYANDFKQAEKCYNDCS-QV 157 (233)
Q Consensus 80 ~~g~~~~~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~-~~~~lg~~~~~~gd~~~A~~~~~~al-~~ 157 (233)
..+....+..++.++|.++.++|+|++|++.|++.+..+.+.+.....++ .+++.++|++..||++.|.+.++++. ..
T Consensus 147 ~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~ 226 (282)
T PF14938_consen 147 QEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQD 226 (282)
T ss_dssp HTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTS
T ss_pred HCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 99999999999999999999999999999999999987766665554454 45899999999999999999999998 56
Q ss_pred CCCCCchHHHHHHHHHHHHhcCCHHHHHHHHhhc-ccccchHHHHHHhccCC
Q 026767 158 DAFLRSDQNRCATKLISAYTEGDVEEIKRVAQSS-AISNLDHVIIKLARKLP 208 (233)
Q Consensus 158 ~~~~~~~e~~~l~~L~~a~~~gd~~~a~~~~~~~-~~~~ld~~~~~l~~~l~ 208 (233)
++|.+++|+.++..|+++++.||.+.+.+++.++ .+++||+|.+.|+.+++
T Consensus 227 ~~F~~s~E~~~~~~l~~A~~~~D~e~f~~av~~~d~~~~ld~w~~~~l~~~k 278 (282)
T PF14938_consen 227 PSFASSREYKFLEDLLEAYEEGDVEAFTEAVAEYDSISRLDNWKTKMLLKIK 278 (282)
T ss_dssp TTSTTSHHHHHHHHHHHHHHTT-CCCHHHHCHHHTTSS---HHHHHHHHHHH
T ss_pred CCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHcccCccHHHHHHHHHHHH
Confidence 8999999999999999999999999999999999 99999999999987654
No 2
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=5.5e-30 Score=202.53 Aligned_cols=222 Identities=51% Similarity=0.815 Sum_probs=213.8
Q ss_pred CCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhCCHHHHHHHHHHHHHHHHhc
Q 026767 2 LSSPWDAAKHMESAAALAKELHNWREVADFYRKASELYNECGRSQPASDALAKAARALEDAVPEDAIQLYTDACIMLEED 81 (233)
Q Consensus 2 ~~~~~~~a~~~~~~g~~~~~~g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~~g~~~~A~~~~~~Al~~~~~~ 81 (233)
..++|++|++|++++.+.+....+.|++++|++|..+|.+.|++..++.++.+.|.+++..+|+.|++.|++++.++++.
T Consensus 64 nrslfhAAKayEqaamLake~~klsEvvdl~eKAs~lY~E~GspdtAAmaleKAak~lenv~Pd~AlqlYqralavve~~ 143 (308)
T KOG1585|consen 64 NRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVECGSPDTAAMALEKAAKALENVKPDDALQLYQRALAVVEED 143 (308)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhcc
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHccCcchHHHhHHHHHHHHHhhCCHHHHHHHHHHhhcCCCCC
Q 026767 82 DKEQMAFDLYRAATNVYIKLEKYADAATFLLRWGLAADKCNATNSQCKAYLSAIIVYLYANDFKQAEKCYNDCSQVDAFL 161 (233)
Q Consensus 82 g~~~~~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~gd~~~A~~~~~~al~~~~~~ 161 (233)
++.+++...+...+.++++..+|.+|...+.+-..+..+........+.+....++|+...||+.|.++++.+.+++.|.
T Consensus 144 dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~ 223 (308)
T KOG1585|consen 144 DRDQMAFELYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFL 223 (308)
T ss_pred chHHHHHHHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCcccc
Confidence 99999999999999999999999999999999999998988889999999999999999999999999999999999999
Q ss_pred CchHHHHHHHHHHHHhcCCHHHHHHHHhhcccccchHHHHHHhccC--CCCchh--hhhhhhcCCC
Q 026767 162 RSDQNRCATKLISAYTEGDVEEIKRVAQSSAISNLDHVIIKLARKL--PTGDVS--ALKKANAVQD 223 (233)
Q Consensus 162 ~~~e~~~l~~L~~a~~~gd~~~a~~~~~~~~~~~ld~~~~~l~~~l--~~~~~~--~~~~~~~~~~ 223 (233)
.+++++++++|+.+|..||.+.+...+..+.++.||+++.+|.+.| |.|+++ ++.+|+++|+
T Consensus 224 ~sed~r~lenLL~ayd~gD~E~~~kvl~sp~~r~MDneya~l~kdl~~P~gn~~~~~~~~~~~~~~ 289 (308)
T KOG1585|consen 224 KSEDSRSLENLLTAYDEGDIEEIKKVLSSPTVRNMDNEYAHLNKDLSNPNGNYVFLCFRMYLFCIM 289 (308)
T ss_pred ChHHHHHHHHHHHHhccCCHHHHHHHHcChHhhhhhHHHHHHhhccCCCCCCccccccchhhhhHH
Confidence 9999999999999999999999999999999999999999999876 777777 9999998886
No 3
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=1.2e-25 Score=176.89 Aligned_cols=207 Identities=24% Similarity=0.231 Sum_probs=191.1
Q ss_pred CCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh-h-CCHHHHHHHHHHHHHHH
Q 026767 1 MLSSPWDAAKHMESAAALAKELHNWREVADFYRKASELYNECGRSQPASDALAKAARALE-D-AVPEDAIQLYTDACIML 78 (233)
Q Consensus 1 ~~~~~~~~a~~~~~~g~~~~~~g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~-~-g~~~~A~~~~~~Al~~~ 78 (233)
+.++..++|+.|..++++|+ .+++.+|+.+.++|+++|...|++..+|+-+..||.+|+ . .++++||.+|++|.++|
T Consensus 66 k~~skhDaat~YveA~~cyk-k~~~~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~y 144 (288)
T KOG1586|consen 66 KAGSKHDAATTYVEAANCYK-KVDPEEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYY 144 (288)
T ss_pred hcCCchhHHHHHHHHHHHhh-ccChHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 35788999999999999999 569999999999999999999999999999999999999 5 89999999999999999
Q ss_pred HhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHccCcchHHHhH-HHHHHHHHhhCCHHHHHHHHHHhh-c
Q 026767 79 EEDDKEQMAFDLYRAATNVYIKLEKYADAATFLLRWGLAADKCNATNSQCKAY-LSAIIVYLYANDFKQAEKCYNDCS-Q 156 (233)
Q Consensus 79 ~~~g~~~~~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~-~~lg~~~~~~gd~~~A~~~~~~al-~ 156 (233)
........+..|+...+..-..+++|.+|+..|++...-....+....-++-| +..|+||+...|...+...++++. .
T Consensus 145 k~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~ 224 (288)
T KOG1586|consen 145 KGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQEL 224 (288)
T ss_pred cchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999987665555555555555 999999999999999999999998 6
Q ss_pred CCCCCCchHHHHHHHHHHHHhcCCHHHHHHHHhhc-ccccchHHHHHHhccCC
Q 026767 157 VDAFLRSDQNRCATKLISAYTEGDVEEIKRVAQSS-AISNLDHVIIKLARKLP 208 (233)
Q Consensus 157 ~~~~~~~~e~~~l~~L~~a~~~gd~~~a~~~~~~~-~~~~ld~~~~~l~~~l~ 208 (233)
.|.|.+++|+.+|..|.++++.+|.+.+.++++++ .+++||.|.+.|+.+++
T Consensus 225 dP~F~dsREckflk~L~~aieE~d~e~fte~vkefDsisrLD~W~ttiLlkiK 277 (288)
T KOG1586|consen 225 DPAFTDSRECKFLKDLLDAIEEQDIEKFTEVVKEFDSISRLDQWKTTILLKIK 277 (288)
T ss_pred CCcccccHHHHHHHHHHHHHhhhhHHHHHHHHHhhhccchHHHHHHHHHHHHH
Confidence 78999999999999999999999999999999999 99999999998888764
No 4
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=99.89 E-value=3.3e-21 Score=161.74 Aligned_cols=202 Identities=19% Similarity=0.262 Sum_probs=167.3
Q ss_pred ChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhCCHHHHHHHHHHHHHHHHhcCC
Q 026767 4 SPWDAAKHMESAAALAKELHNWREVADFYRKASELYNECGRSQPASDALAKAARALEDAVPEDAIQLYTDACIMLEEDDK 83 (233)
Q Consensus 4 ~~~~~a~~~~~~g~~~~~~g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~~g~~~~A~~~~~~Al~~~~~~g~ 83 (233)
++.+++..|..+|+.|+..+++++|.++|.+|.+++.+.+++..++.++.+++.+|..+++++|+.+|++|+++|...|+
T Consensus 30 ~~e~Aa~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~~~~~Ai~~~~~A~~~y~~~G~ 109 (282)
T PF14938_consen 30 DYEEAADLYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKGDPDEAIECYEKAIEIYREAGR 109 (282)
T ss_dssp HHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHCT-
T ss_pred CHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHhcCc
Confidence 56789999999999999999999999999999999999999999999999999999977999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHHHhHccCcchHHHhHHHHHHHHHhhCCHHHHHHHHHHhhcCCC---
Q 026767 84 EQMAFDLYRAATNVYIKL-EKYADAATFLLRWGLAADKCNATNSQCKAYLSAIIVYLYANDFKQAEKCYNDCSQVDA--- 159 (233)
Q Consensus 84 ~~~~~~~l~~lg~~~~~~-g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~gd~~~A~~~~~~al~~~~--- 159 (233)
+..++.++.++|.+|... |++++|+++|++|+++++..+.......++..++.++...|+|.+|.+.|++......
T Consensus 110 ~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~ 189 (282)
T PF14938_consen 110 FSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENN 189 (282)
T ss_dssp HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHC
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhccc
Confidence 999999999999999998 9999999999999999999998888899999999999999999999999999873322
Q ss_pred CCCchHHH-HHHHHHHHHhcCCHHHHHHHHhhc--c-cccchHHHHHHhc
Q 026767 160 FLRSDQNR-CATKLISAYTEGDVEEIKRVAQSS--A-ISNLDHVIIKLAR 205 (233)
Q Consensus 160 ~~~~~e~~-~l~~L~~a~~~gd~~~a~~~~~~~--~-~~~ld~~~~~l~~ 205 (233)
.....-.. .+..++-.+..||+..|...++++ . -++.+..-.+++.
T Consensus 190 l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~ 239 (282)
T PF14938_consen 190 LLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLE 239 (282)
T ss_dssp TTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHH
T ss_pred ccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHH
Confidence 11222323 344544444789999999999998 2 2444454344433
No 5
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=99.79 E-value=1.6e-19 Score=152.75 Aligned_cols=197 Identities=16% Similarity=0.119 Sum_probs=154.4
Q ss_pred CCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh-hCC-----------------
Q 026767 2 LSSPWDAAKHMESAAALAKELHNWREVADFYRKASELYNECGRSQPASDALAKAARALE-DAV----------------- 63 (233)
Q Consensus 2 ~~~~~~~a~~~~~~g~~~~~~g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~-~g~----------------- 63 (233)
+|+..+.|++--|+|++++.+|.|++|+.|..+-+++.++.||.-..+++|.|+|.||. .|.
T Consensus 88 lgdklGEAKssgNLGNtlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev 167 (639)
T KOG1130|consen 88 LGDKLGEAKSSGNLGNTLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEV 167 (639)
T ss_pred hcchhccccccccccchhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHH
Confidence 47788888888889999988899999999999999998999998888888888888877 542
Q ss_pred ---HHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHccCcchHHHhHHHHHHHHHh
Q 026767 64 ---PEDAIQLYTDACIMLEEDDKEQMAFDLYRAATNVYIKLEKYADAATFLLRWGLAADKCNATNSQCKAYLSAIIVYLY 140 (233)
Q Consensus 64 ---~~~A~~~~~~Al~~~~~~g~~~~~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~ 140 (233)
++.|.++|+.-+++.+..|+....+.++.++|..|.-+|+|+.|+.+-+.=+++.++.|++-.+-+++.+||.||.-
T Consensus 168 ~~al~~Av~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hif 247 (639)
T KOG1130|consen 168 TSALENAVKFYMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIF 247 (639)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhh
Confidence 35677778888888888888777778888888888888888888888888888888888887777888888888888
Q ss_pred hCCHHHHHHHHHHhhcCC--CCCCchHHHHHHHHHHHH-hcCCHHHHHHHHhhc--ccccchH
Q 026767 141 ANDFKQAEKCYNDCSQVD--AFLRSDQNRCATKLISAY-TEGDVEEIKRVAQSS--AISNLDH 198 (233)
Q Consensus 141 ~gd~~~A~~~~~~al~~~--~~~~~~e~~~l~~L~~a~-~~gd~~~a~~~~~~~--~~~~ld~ 198 (233)
.|+++.|.++|...+.+. -..+..|+..+..||.+| -..++..|.+++++. +.+.|.+
T Consensus 248 lg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~D 310 (639)
T KOG1130|consen 248 LGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELED 310 (639)
T ss_pred hcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888888776333 235667777778888777 566777777776665 4444443
No 6
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=99.76 E-value=5e-18 Score=143.75 Aligned_cols=190 Identities=13% Similarity=0.024 Sum_probs=172.9
Q ss_pred CCChHHHHHHHHHHHHHHHHcCC--------------------HHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh-
Q 026767 2 LSSPWDAAKHMESAAALAKELHN--------------------WREVADFYRKASELYNECGRSQPASDALAKAARALE- 60 (233)
Q Consensus 2 ~~~~~~~a~~~~~~g~~~~~~g~--------------------~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~- 60 (233)
|||.-..++++.|+|++|-..|+ ++.|+.+|++-+++.++.||...+++++.++|..|+
T Consensus 128 LgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYl 207 (639)
T KOG1130|consen 128 LGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLELSEKLGDRLAQGRAYGNLGNTYYL 207 (639)
T ss_pred HhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHHHHHHhhhHHhhcchhcccCceeee
Confidence 67888899999999999986665 356788888888888999999999999999999999
Q ss_pred hCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHccCcchHHHhHHHHHHHHHh
Q 026767 61 DAVPEDAIQLYTDACIMLEEDDKEQMAFDLYRAATNVYIKLEKYADAATFLLRWGLAADKCNATNSQCKAYLSAIIVYLY 140 (233)
Q Consensus 61 ~g~~~~A~~~~~~Al~~~~~~g~~~~~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~ 140 (233)
.|++++||.+.+.=++|.++.|++...-.++.|+|.+|+-+|+++.|+++|.+.+.+..+++++..++..-+++|.+|.-
T Consensus 208 LGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytl 287 (639)
T KOG1130|consen 208 LGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTL 287 (639)
T ss_pred eccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHH
Confidence 89999999999999999999999988889999999999999999999999999999999999999999999999999999
Q ss_pred hCCHHHHHHHHHHhhcCCCC--CCchHHHHHHHHHHHH-hcCCHHHHHHHHhhc
Q 026767 141 ANDFKQAEKCYNDCSQVDAF--LRSDQNRCATKLISAY-TEGDVEEIKRVAQSS 191 (233)
Q Consensus 141 ~gd~~~A~~~~~~al~~~~~--~~~~e~~~l~~L~~a~-~~gd~~~a~~~~~~~ 191 (233)
..++.+|+.++.+-+.|... ++.+|.+++-.||.+| ..|..++|..+....
T Consensus 288 l~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~h 341 (639)
T KOG1130|consen 288 LKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELH 341 (639)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 99999999999998877652 5789999999999999 789999988776665
No 7
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.72 E-value=1.8e-15 Score=119.73 Aligned_cols=187 Identities=19% Similarity=0.219 Sum_probs=165.1
Q ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhCCHHHHHHHHHHHHHHHHhcCCh
Q 026767 5 PWDAAKHMESAAALAKELHNWREVADFYRKASELYNECGRSQPASDALAKAARALEDAVPEDAIQLYTDACIMLEEDDKE 84 (233)
Q Consensus 5 ~~~~a~~~~~~g~~~~~~g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~~g~~~~A~~~~~~Al~~~~~~g~~ 84 (233)
...++..|..+|++|+..+++..|...|.+|.+++.+.|+.+.+|.++..++.+|..+++.+|+.++++|++||...|+.
T Consensus 30 ~eeAadl~~~Aan~yklaK~w~~AG~aflkaA~~h~k~~skhDaat~YveA~~cykk~~~~eAv~cL~~aieIyt~~Grf 109 (288)
T KOG1586|consen 30 YEEAAELYERAANMYKLAKNWSAAGDAFLKAADLHLKAGSKHDAATTYVEAANCYKKVDPEEAVNCLEKAIEIYTDMGRF 109 (288)
T ss_pred hHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHhhhHH
Confidence 56789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHH-hccHHHHHHHHHHHHHHHhHccCcchHHHhHHHHHHHHHhhCCHHHHHHHHHHhhcC--C-CC
Q 026767 85 QMAFDLYRAATNVYIK-LEKYADAATFLLRWGLAADKCNATNSQCKAYLSAIIVYLYANDFKQAEKCYNDCSQV--D-AF 160 (233)
Q Consensus 85 ~~~~~~l~~lg~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~gd~~~A~~~~~~al~~--~-~~ 160 (233)
..++.-...||++|-. +.++.+|+.+|+++.+.+..........++++..+..-...|+|.+|++.|++.... . ..
T Consensus 110 ~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~L 189 (288)
T KOG1586|consen 110 TMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNL 189 (288)
T ss_pred HHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchH
Confidence 9999999999999975 499999999999999999887777788889999999999999999999999997522 1 11
Q ss_pred CC-chHHHHHHHHHHHHhcCCHHHHHHHHhhc
Q 026767 161 LR-SDQNRCATKLISAYTEGDVEEIKRVAQSS 191 (233)
Q Consensus 161 ~~-~~e~~~l~~L~~a~~~gd~~~a~~~~~~~ 191 (233)
.. +-...++......+...|.-.+..+++.+
T Consensus 190 LKys~KdyflkAgLChl~~~D~v~a~~ALeky 221 (288)
T KOG1586|consen 190 LKYSAKDYFLKAGLCHLCKADEVNAQRALEKY 221 (288)
T ss_pred HHhHHHHHHHHHHHHhHhcccHHHHHHHHHHH
Confidence 12 33445665555555779999999999988
No 8
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.72 E-value=2.7e-16 Score=138.92 Aligned_cols=159 Identities=20% Similarity=0.225 Sum_probs=140.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCChHHHH
Q 026767 10 KHMESAAALAKELHNWREVADFYRKASELYNECGRSQPASDALAKAARALE-DAVPEDAIQLYTDACIMLEEDDKEQMAF 88 (233)
Q Consensus 10 ~~~~~~g~~~~~~g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~~~~~~ 88 (233)
.+|+|+|+.++..|+..||.+||.+|+.+. ..-+.+++|+|.+|. +|..++|..+|++|++.++.. +
T Consensus 321 ~Ay~NlanALkd~G~V~ea~~cYnkaL~l~------p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~~------a 388 (966)
T KOG4626|consen 321 DAYNNLANALKDKGSVTEAVDCYNKALRLC------PNHADAMNNLGNIYREQGKIEEATRLYLKALEVFPEF------A 388 (966)
T ss_pred HHHhHHHHHHHhccchHHHHHHHHHHHHhC------CccHHHHHHHHHHHHHhccchHHHHHHHHHHhhChhh------h
Confidence 578999999999999999999999998884 356788999999999 899999999999999999863 4
Q ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHccCcchHHHhHHHHHHHHHhhCCHHHHHHHHHHhhcC-CCCCCchHHH
Q 026767 89 DLYRAATNVYIKLEKYADAATFLLRWGLAADKCNATNSQCKAYLSAIIVYLYANDFKQAEKCYNDCSQV-DAFLRSDQNR 167 (233)
Q Consensus 89 ~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~gd~~~A~~~~~~al~~-~~~~~~~e~~ 167 (233)
.+.+|+|.+|.++|++++|+.+|++++.+ .+.-+.+|.++|.+|-.+||...|..+|.+++.+ +.| ++
T Consensus 389 aa~nNLa~i~kqqgnl~~Ai~~YkealrI------~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~-----Ae 457 (966)
T KOG4626|consen 389 AAHNNLASIYKQQGNLDDAIMCYKEALRI------KPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTF-----AE 457 (966)
T ss_pred hhhhhHHHHHHhcccHHHHHHHHHHHHhc------CchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHH-----HH
Confidence 58999999999999999999999999976 5667889999999999999999999999999855 445 77
Q ss_pred HHHHHHHHH-hcCCHHHHHHHHhhc
Q 026767 168 CATKLISAY-TEGDVEEIKRVAQSS 191 (233)
Q Consensus 168 ~l~~L~~a~-~~gd~~~a~~~~~~~ 191 (233)
+..+|+..| ..|+..+|....+.+
T Consensus 458 AhsNLasi~kDsGni~~AI~sY~~a 482 (966)
T KOG4626|consen 458 AHSNLASIYKDSGNIPEAIQSYRTA 482 (966)
T ss_pred HHhhHHHHhhccCCcHHHHHHHHHH
Confidence 889999999 799999999888887
No 9
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.71 E-value=3.6e-15 Score=132.66 Aligned_cols=188 Identities=15% Similarity=0.146 Sum_probs=162.1
Q ss_pred ChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc--CCchHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHh
Q 026767 4 SPWDAAKHMESAAALAKELHNWREVADFYRKASELYNEC--GRSQPASDALAKAARALE-DAVPEDAIQLYTDACIMLEE 80 (233)
Q Consensus 4 ~~~~~a~~~~~~g~~~~~~g~~~eA~~~~~~A~~l~~~~--g~~~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~ 80 (233)
.....+....++|.+|..++++++|+..|++|+.+++.. .+....|.+++|+|..|. .|++++|..++++|++|++.
T Consensus 236 ~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~ 315 (508)
T KOG1840|consen 236 KHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEK 315 (508)
T ss_pred cCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHH
Confidence 355677888899999999999999999999999999863 557788999999999999 89999999999999999998
Q ss_pred cC--ChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHc-cCc-chHHHhHHHHHHHHHhhCCHHHHHHHHHHhhc
Q 026767 81 DD--KEQMAFDLYRAATNVYIKLEKYADAATFLLRWGLAADKC-NAT-NSQCKAYLSAIIVYLYANDFKQAEKCYNDCSQ 156 (233)
Q Consensus 81 ~g--~~~~~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-~~~-~~~a~~~~~lg~~~~~~gd~~~A~~~~~~al~ 156 (233)
.- .....+..+.+++.++...+++++|..++++++.++... +.. ...+..+.++|.+|+.+|+|.+|++.|++++.
T Consensus 316 ~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~ 395 (508)
T KOG1840|consen 316 LLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQ 395 (508)
T ss_pred hhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 32 344455789999999999999999999999999998843 222 36788999999999999999999999999995
Q ss_pred CCC---C-CCchHHHHHHHHHHHH-hcCCHHHHHHHHhhc
Q 026767 157 VDA---F-LRSDQNRCATKLISAY-TEGDVEEIKRVAQSS 191 (233)
Q Consensus 157 ~~~---~-~~~~e~~~l~~L~~a~-~~gd~~~a~~~~~~~ 191 (233)
+.+ + .+...+.++.+|+.+| +.+....|.....++
T Consensus 396 ~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~ 435 (508)
T KOG1840|consen 396 ILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEA 435 (508)
T ss_pred HHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHH
Confidence 532 2 3678899999999999 778888788777777
No 10
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.69 E-value=1e-14 Score=129.78 Aligned_cols=189 Identities=15% Similarity=0.204 Sum_probs=164.5
Q ss_pred CChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH--cCCchHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHH
Q 026767 3 SSPWDAAKHMESAAALAKELHNWREVADFYRKASELYNE--CGRSQPASDALAKAARALE-DAVPEDAIQLYTDACIMLE 79 (233)
Q Consensus 3 ~~~~~~a~~~~~~g~~~~~~g~~~eA~~~~~~A~~l~~~--~g~~~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~ 79 (233)
.+.+.+|..++++|.+|...|+++||..|+++|++++.+ .-+....+..+.+++.++. .+++++|+.+|+++++++.
T Consensus 277 ~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~ 356 (508)
T KOG1840|consen 277 EDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYL 356 (508)
T ss_pred CCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHH
Confidence 567889999999999999999999999999999999987 2345567888999999999 8999999999999999999
Q ss_pred hcC--ChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHccC--cchHHHhHHHHHHHHHhhCCHHHHHHHHHHhh
Q 026767 80 EDD--KEQMAFDLYRAATNVYIKLEKYADAATFLLRWGLAADKCNA--TNSQCKAYLSAIIVYLYANDFKQAEKCYNDCS 155 (233)
Q Consensus 80 ~~g--~~~~~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~--~~~~a~~~~~lg~~~~~~gd~~~A~~~~~~al 155 (233)
..- +....+.+..++|.+|..+|+|.+|.++|++++.+.++... ....+..++.+|..|...+.+.+|...|.++.
T Consensus 357 ~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~ 436 (508)
T KOG1840|consen 357 DAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAK 436 (508)
T ss_pred hhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHH
Confidence 432 44467789999999999999999999999999999988765 56678889999999999999999999999998
Q ss_pred cCC-CC--CCchHHHHHHHHHHHH-hcCCHHHHHHHHhhc
Q 026767 156 QVD-AF--LRSDQNRCATKLISAY-TEGDVEEIKRVAQSS 191 (233)
Q Consensus 156 ~~~-~~--~~~~e~~~l~~L~~a~-~~gd~~~a~~~~~~~ 191 (233)
.+. .+ +.+.--..+.+|+.+| ..|+.+.|.+.....
T Consensus 437 ~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~ 476 (508)
T KOG1840|consen 437 DIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKV 476 (508)
T ss_pred HHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 543 22 3456667899999999 799999999887655
No 11
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.69 E-value=4.2e-15 Score=117.59 Aligned_cols=178 Identities=15% Similarity=0.007 Sum_probs=150.8
Q ss_pred ChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcC
Q 026767 4 SPWDAAKHMESAAALAKELHNWREVADFYRKASELYNECGRSQPASDALAKAARALE-DAVPEDAIQLYTDACIMLEEDD 82 (233)
Q Consensus 4 ~~~~~a~~~~~~g~~~~~~g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g 82 (233)
+...++++...+|.-|.+.|++..|..-+++|++.- | .-..++.-++.+|. .|+++.|-+.|++|+.+.+..|
T Consensus 30 ~~~~aa~arlqLal~YL~~gd~~~A~~nlekAL~~D-----P-s~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~G 103 (250)
T COG3063 30 DRNEAAKARLQLALGYLQQGDYAQAKKNLEKALEHD-----P-SYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNG 103 (250)
T ss_pred cHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-----c-ccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCcc
Confidence 466789999999999999999999999999999874 3 35677888999999 8999999999999999999877
Q ss_pred ChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHccCcchHHHhHHHHHHHHHhhCCHHHHHHHHHHhhc-CCCCC
Q 026767 83 KEQMAFDLYRAATNVYIKLEKYADAATFLLRWGLAADKCNATNSQCKAYLSAIIVYLYANDFKQAEKCYNDCSQ-VDAFL 161 (233)
Q Consensus 83 ~~~~~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~gd~~~A~~~~~~al~-~~~~~ 161 (233)
.++||.|.+++.+|+|++|...|++|+. .......+.++.|+|.|.++.|+++.|.++|++++. .+.+.
T Consensus 104 ------dVLNNYG~FLC~qg~~~eA~q~F~~Al~----~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~ 173 (250)
T COG3063 104 ------DVLNNYGAFLCAQGRPEEAMQQFERALA----DPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFP 173 (250)
T ss_pred ------chhhhhhHHHHhCCChHHHHHHHHHHHh----CCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCC
Confidence 5899999999999999999999999994 456677888999999999999999999999999994 45553
Q ss_pred CchHHHHHHHHHHHH-hcCCHHHHHHHHhhc-ccccchHHHHH
Q 026767 162 RSDQNRCATKLISAY-TEGDVEEIKRVAQSS-AISNLDHVIIK 202 (233)
Q Consensus 162 ~~~e~~~l~~L~~a~-~~gd~~~a~~~~~~~-~~~~ld~~~~~ 202 (233)
..+..+.+.+ ..||+..|+.+++.+ .-.....+...
T Consensus 174 -----~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~~~~~A~sL~ 211 (250)
T COG3063 174 -----PALLELARLHYKAGDYAPARLYLERYQQRGGAQAESLL 211 (250)
T ss_pred -----hHHHHHHHHHHhcccchHHHHHHHHHHhcccccHHHHH
Confidence 3444566655 899999999999988 33334444333
No 12
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.68 E-value=1.3e-15 Score=134.72 Aligned_cols=188 Identities=20% Similarity=0.239 Sum_probs=140.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--------------HHHcCCchHHHH--------------HHHHHHHHhh
Q 026767 9 AKHMESAAALAKELHNWREVADFYRKASEL--------------YNECGRSQPASD--------------ALAKAARALE 60 (233)
Q Consensus 9 a~~~~~~g~~~~~~g~~~eA~~~~~~A~~l--------------~~~~g~~~~~a~--------------~l~~lg~~~~ 60 (233)
..+|.|+|++|++.+.|++|+.+|.+|+.+ |.+.|..+-+.. +++|+|..+.
T Consensus 252 ~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALk 331 (966)
T KOG4626|consen 252 LDAYINLGNVYKEARIFDRAVSCYLRALNLRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALK 331 (966)
T ss_pred hHHHhhHHHHHHHHhcchHHHHHHHHHHhcCCcchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHH
Confidence 568999999999999999999999999986 233344333332 3444555555
Q ss_pred -hCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHccCcchHHHhHHHHHHHHH
Q 026767 61 -DAVPEDAIQLYTDACIMLEEDDKEQMAFDLYRAATNVYIKLEKYADAATFLLRWGLAADKCNATNSQCKAYLSAIIVYL 139 (233)
Q Consensus 61 -~g~~~~A~~~~~~Al~~~~~~g~~~~~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~ 139 (233)
.|+..+|..+|.+|+.+-.. -+.+++|+|.++.++|.++.|..+|+++++++ +.-+.++.+|+.+|.
T Consensus 332 d~G~V~ea~~cYnkaL~l~p~------hadam~NLgni~~E~~~~e~A~~ly~~al~v~------p~~aaa~nNLa~i~k 399 (966)
T KOG4626|consen 332 DKGSVTEAVDCYNKALRLCPN------HADAMNNLGNIYREQGKIEEATRLYLKALEVF------PEFAAAHNNLASIYK 399 (966)
T ss_pred hccchHHHHHHHHHHHHhCCc------cHHHHHHHHHHHHHhccchHHHHHHHHHHhhC------hhhhhhhhhHHHHHH
Confidence 45555566666655555442 24678899999999999999999999998874 344667899999999
Q ss_pred hhCCHHHHHHHHHHhhcC-CCCCCchHHHHHHHHHHHH-hcCCHHHHHHHHhhc-ccccchH-HHHHHhccC-CCCchh
Q 026767 140 YANDFKQAEKCYNDCSQV-DAFLRSDQNRCATKLISAY-TEGDVEEIKRVAQSS-AISNLDH-VIIKLARKL-PTGDVS 213 (233)
Q Consensus 140 ~~gd~~~A~~~~~~al~~-~~~~~~~e~~~l~~L~~a~-~~gd~~~a~~~~~~~-~~~~ld~-~~~~l~~~l-~~~~~~ 213 (233)
.+|++++|+.+|.+++.+ +.| +..+.++|..| +.||...|..++.++ .+..--. .+..|+--- ..|.|+
T Consensus 400 qqgnl~~Ai~~YkealrI~P~f-----Ada~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~ 473 (966)
T KOG4626|consen 400 QQGNLDDAIMCYKEALRIKPTF-----ADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIP 473 (966)
T ss_pred hcccHHHHHHHHHHHHhcCchH-----HHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcH
Confidence 999999999999999965 556 78999999999 899999999999999 5554322 345554433 346665
No 13
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.57 E-value=8.7e-13 Score=105.27 Aligned_cols=210 Identities=17% Similarity=0.110 Sum_probs=169.0
Q ss_pred CChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhc
Q 026767 3 SSPWDAAKHMESAAALAKELHNWREVADFYRKASELYNECGRSQPASDALAKAARALE-DAVPEDAIQLYTDACIMLEED 81 (233)
Q Consensus 3 ~~~~~~a~~~~~~g~~~~~~g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~ 81 (233)
.|+.++|..|..+++.|+...+|++|..+..+|++.|+.+.++..+|.++..++.+.. ...+.++..+|++|..+|.+.
T Consensus 25 ad~dgaas~yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~klsEvvdl~eKAs~lY~E~ 104 (308)
T KOG1585|consen 25 ADWDGAASLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVEC 104 (308)
T ss_pred CCchhhHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHh
Confidence 4688999999999999999999999999999999999999999999999999999999 799999999999999999999
Q ss_pred CChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHccCcchHHHhHHHHHHHHHhhCCHHHHHHHHHHhhcCC-CC
Q 026767 82 DKEQMAFDLYRAATNVYIKLEKYADAATFLLRWGLAADKCNATNSQCKAYLSAIIVYLYANDFKQAEKCYNDCSQVD-AF 160 (233)
Q Consensus 82 g~~~~~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~gd~~~A~~~~~~al~~~-~~ 160 (233)
|.+..++.++.+.|.+. +..+.++|+.+|++++.+++..+..+.....+-..+.++.+...+.+|-..+.+-..+. .+
T Consensus 105 GspdtAAmaleKAak~l-env~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~ 183 (308)
T KOG1585|consen 105 GSPDTAAMALEKAAKAL-ENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAATAFLKEGVAADKC 183 (308)
T ss_pred CCcchHHHHHHHHHHHh-hcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHH
Confidence 99999999999999875 67899999999999999998876666666667888999999999999988887643221 11
Q ss_pred C-CchHHHHHHHHHHHH-hcCCHHHHHHHHhhc--ccccchHHHHHHhccC----CCCchh
Q 026767 161 L-RSDQNRCATKLISAY-TEGDVEEIKRVAQSS--AISNLDHVIIKLARKL----PTGDVS 213 (233)
Q Consensus 161 ~-~~~e~~~l~~L~~a~-~~gd~~~a~~~~~~~--~~~~ld~~~~~l~~~l----~~~~~~ 213 (233)
. -...+......+-++ -..|+..+..+.+.. +=.+++++-.+.+.+| -.|++-
T Consensus 184 ~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ayd~gD~E 244 (308)
T KOG1585|consen 184 DAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAYDEGDIE 244 (308)
T ss_pred hhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHhccCCHH
Confidence 1 122333333333334 578999999998875 5556666544433332 445554
No 14
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.54 E-value=1.2e-12 Score=104.58 Aligned_cols=168 Identities=18% Similarity=0.079 Sum_probs=138.8
Q ss_pred ChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcC
Q 026767 4 SPWDAAKHMESAAALAKELHNWREVADFYRKASELYNECGRSQPASDALAKAARALE-DAVPEDAIQLYTDACIMLEEDD 82 (233)
Q Consensus 4 ~~~~~a~~~~~~g~~~~~~g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g 82 (233)
+....+..+.++|.+|...|++++|+.++++++... + ....++..+|.++. .|++++|+++|++++++.+...
T Consensus 26 ~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-----p-~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~ 99 (234)
T TIGR02521 26 DRNKAAKIRVQLALGYLEQGDLEVAKENLDKALEHD-----P-DDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNG 99 (234)
T ss_pred cCCcHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-----c-ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH
Confidence 445678899999999999999999999999998763 2 23578888999999 8999999999999999865422
Q ss_pred ChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHccCcchHHHhHHHHHHHHHhhCCHHHHHHHHHHhhcCCCCCC
Q 026767 83 KEQMAFDLYRAATNVYIKLEKYADAATFLLRWGLAADKCNATNSQCKAYLSAIIVYLYANDFKQAEKCYNDCSQVDAFLR 162 (233)
Q Consensus 83 ~~~~~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~gd~~~A~~~~~~al~~~~~~~ 162 (233)
.++.++|.++...|++++|+.+|++++... ........+.++|.++...|++.+|...+++++.....
T Consensus 100 ------~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-- 167 (234)
T TIGR02521 100 ------DVLNNYGTFLCQQGKYEQAMQQFEQAIEDP----LYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQ-- 167 (234)
T ss_pred ------HHHHHHHHHHHHcccHHHHHHHHHHHHhcc----ccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC--
Confidence 478899999999999999999999998631 22334556788999999999999999999999854321
Q ss_pred chHHHHHHHHHHHH-hcCCHHHHHHHHhhc
Q 026767 163 SDQNRCATKLISAY-TEGDVEEIKRVAQSS 191 (233)
Q Consensus 163 ~~e~~~l~~L~~a~-~~gd~~~a~~~~~~~ 191 (233)
.......++..+ ..|+.++|...++++
T Consensus 168 --~~~~~~~la~~~~~~~~~~~A~~~~~~~ 195 (234)
T TIGR02521 168 --RPESLLELAELYYLRGQYKDARAYLERY 195 (234)
T ss_pred --ChHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 234566788877 899999999999988
No 15
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.49 E-value=2.3e-12 Score=119.23 Aligned_cols=164 Identities=11% Similarity=0.017 Sum_probs=137.7
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCCh
Q 026767 6 WDAAKHMESAAALAKELHNWREVADFYRKASELYNECGRSQPASDALAKAARALE-DAVPEDAIQLYTDACIMLEEDDKE 84 (233)
Q Consensus 6 ~~~a~~~~~~g~~~~~~g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~~ 84 (233)
...+.++..+|.++..+|++++|+.+|++++.+. + ....++.++|.++. .|++++|+.+|++++++.+..
T Consensus 328 ~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~-----P-~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~--- 398 (615)
T TIGR00990 328 EKEAIALNLRGTFKCLKGKHLEALADLSKSIELD-----P-RVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSED--- 398 (615)
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-----C-CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC---
Confidence 3566788999999999999999999999999874 2 34567889999999 799999999999999884432
Q ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHccCcchHHHhHHHHHHHHHhhCCHHHHHHHHHHhhcCCCCCCch
Q 026767 85 QMAFDLYRAATNVYIKLEKYADAATFLLRWGLAADKCNATNSQCKAYLSAIIVYLYANDFKQAEKCYNDCSQVDAFLRSD 164 (233)
Q Consensus 85 ~~~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~gd~~~A~~~~~~al~~~~~~~~~ 164 (233)
..++..+|.++...|++++|+.+|++++.+. +.....+..+|.++..+|++++|+..|++++... ..
T Consensus 399 ---~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~------P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~----P~ 465 (615)
T TIGR00990 399 ---PDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD------PDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNF----PE 465 (615)
T ss_pred ---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC------ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC----CC
Confidence 3578999999999999999999999999762 2334568899999999999999999999998542 12
Q ss_pred HHHHHHHHHHHH-hcCCHHHHHHHHhhc
Q 026767 165 QNRCATKLISAY-TEGDVEEIKRVAQSS 191 (233)
Q Consensus 165 e~~~l~~L~~a~-~~gd~~~a~~~~~~~ 191 (233)
...+...+|.++ ..|+++.|...++++
T Consensus 466 ~~~~~~~lg~~~~~~g~~~~A~~~~~~A 493 (615)
T TIGR00990 466 APDVYNYYGELLLDQNKFDEAIEKFDTA 493 (615)
T ss_pred ChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 245777889888 799999999999988
No 16
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.44 E-value=8.9e-12 Score=115.35 Aligned_cols=132 Identities=14% Similarity=0.016 Sum_probs=93.5
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCChHH
Q 026767 8 AAKHMESAAALAKELHNWREVADFYRKASELYNECGRSQPASDALAKAARALE-DAVPEDAIQLYTDACIMLEEDDKEQM 86 (233)
Q Consensus 8 ~a~~~~~~g~~~~~~g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~~~~ 86 (233)
...++..+|.++...|++++|+.+|++++++. + .-..++..+|.++. .|++++|+.+|++++++.+..
T Consensus 364 ~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-----p-~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~----- 432 (615)
T TIGR00990 364 VTQSYIKRASMNLELGDPDKAEEDFDKALKLN-----S-EDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDF----- 432 (615)
T ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-----C-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccC-----
Confidence 35677888888888888888888888887762 2 22456777888877 688888888888888775532
Q ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHccCcchHHHhHHHHHHHHHhhCCHHHHHHHHHHhhcC
Q 026767 87 AFDLYRAATNVYIKLEKYADAATFLLRWGLAADKCNATNSQCKAYLSAIIVYLYANDFKQAEKCYNDCSQV 157 (233)
Q Consensus 87 ~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~gd~~~A~~~~~~al~~ 157 (233)
...+.++|.++..+|++++|+.+|++++... +....++..+|.++..+|++++|++.|++++.+
T Consensus 433 -~~~~~~la~~~~~~g~~~eA~~~~~~al~~~------P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l 496 (615)
T TIGR00990 433 -IFSHIQLGVTQYKEGSIASSMATFRRCKKNF------PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIEL 496 (615)
T ss_pred -HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC------CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 2356677777777777777777777777542 223446677777777777777777777777643
No 17
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.42 E-value=3.7e-11 Score=95.84 Aligned_cols=163 Identities=17% Similarity=0.109 Sum_probs=128.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCChHHH
Q 026767 9 AKHMESAAALAKELHNWREVADFYRKASELYNECGRSQPASDALAKAARALE-DAVPEDAIQLYTDACIMLEEDDKEQMA 87 (233)
Q Consensus 9 a~~~~~~g~~~~~~g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~~~~~ 87 (233)
..++..+|.+|...|++++|+.+|++++.+.. ....++.++|.++. .|++++|+.+|++++...... ..
T Consensus 65 ~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~------~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~----~~ 134 (234)
T TIGR02521 65 YLAYLALALYYQQLGELEKAEDSFRRALTLNP------NNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYP----QP 134 (234)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC------CCHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccc----cc
Confidence 56788899999999999999999999998742 22357889999999 799999999999999753211 12
Q ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHccCcchHHHhHHHHHHHHHhhCCHHHHHHHHHHhhcCCCCCCchHHH
Q 026767 88 FDLYRAATNVYIKLEKYADAATFLLRWGLAADKCNATNSQCKAYLSAIIVYLYANDFKQAEKCYNDCSQVDAFLRSDQNR 167 (233)
Q Consensus 88 ~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~gd~~~A~~~~~~al~~~~~~~~~e~~ 167 (233)
...+.++|.++...|++++|..+|++++.... .....+..++.++...|++++|...+++++.... ....
T Consensus 135 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~------~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~----~~~~ 204 (234)
T TIGR02521 135 ARSLENAGLCALKAGDFDKAEKYLTRALQIDP------QRPESLLELAELYYLRGQYKDARAYLERYQQTYN----QTAE 204 (234)
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC----CCHH
Confidence 34678899999999999999999999987521 2245678999999999999999999999986521 1233
Q ss_pred HHHHHHHHH-hcCCHHHHHHHHhhc
Q 026767 168 CATKLISAY-TEGDVEEIKRVAQSS 191 (233)
Q Consensus 168 ~l~~L~~a~-~~gd~~~a~~~~~~~ 191 (233)
.+..++..+ ..|+.+.+...++..
T Consensus 205 ~~~~~~~~~~~~~~~~~a~~~~~~~ 229 (234)
T TIGR02521 205 SLWLGIRIARALGDVAAAQRYGAQL 229 (234)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 344556666 689999998876654
No 18
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.38 E-value=1.2e-10 Score=101.54 Aligned_cols=91 Identities=10% Similarity=-0.002 Sum_probs=42.3
Q ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHHhHccCcchHHHhHHHHHHHHHhhCCHHHHHHHHHHhhcCCCCCCchHHHHHH
Q 026767 91 YRAATNVYIKLEKYADAATFLLRWGLAADKCNATNSQCKAYLSAIIVYLYANDFKQAEKCYNDCSQVDAFLRSDQNRCAT 170 (233)
Q Consensus 91 l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~gd~~~A~~~~~~al~~~~~~~~~e~~~l~ 170 (233)
+..+|.++...|++++|+.+|++++.. .+.....++..++.+|...|++++|...+++++.... ......
T Consensus 217 ~~~la~~~~~~g~~~~A~~~~~~~~~~-----~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p-----~~~~~~ 286 (389)
T PRK11788 217 SILLGDLALAQGDYAAAIEALERVEEQ-----DPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEYP-----GADLLL 286 (389)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHH-----ChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-----CchHHH
Confidence 334444444444444444444444432 1111122344455555555555555555555442210 011224
Q ss_pred HHHHHH-hcCCHHHHHHHHhhc
Q 026767 171 KLISAY-TEGDVEEIKRVAQSS 191 (233)
Q Consensus 171 ~L~~a~-~~gd~~~a~~~~~~~ 191 (233)
.++..+ ..|++++|...+++.
T Consensus 287 ~la~~~~~~g~~~~A~~~l~~~ 308 (389)
T PRK11788 287 ALAQLLEEQEGPEAAQALLREQ 308 (389)
T ss_pred HHHHHHHHhCCHHHHHHHHHHH
Confidence 555555 566666666666666
No 19
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=99.36 E-value=1.1e-11 Score=83.71 Aligned_cols=73 Identities=23% Similarity=0.373 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCch-HHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHH
Q 026767 7 DAAKHMESAAALAKELHNWREVADFYRKASELYNECGRSQ-PASDALAKAARALE-DAVPEDAIQLYTDACIMLE 79 (233)
Q Consensus 7 ~~a~~~~~~g~~~~~~g~~~eA~~~~~~A~~l~~~~g~~~-~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~ 79 (233)
..+.++.++|.+|..+|++++|+.+|++|+++....|+.. ..+.++.++|.++. .|++++|+++|++|+++++
T Consensus 3 ~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i~~ 77 (78)
T PF13424_consen 3 DTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDIFE 77 (78)
T ss_dssp HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhc
Confidence 4556666666666666666666666666666655566543 24666666666666 5666666666666666654
No 20
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.33 E-value=4.8e-10 Score=107.97 Aligned_cols=183 Identities=11% Similarity=0.005 Sum_probs=149.6
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCChHH
Q 026767 8 AAKHMESAAALAKELHNWREVADFYRKASELYNECGRSQPASDALAKAARALE-DAVPEDAIQLYTDACIMLEEDDKEQM 86 (233)
Q Consensus 8 ~a~~~~~~g~~~~~~g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~~~~ 86 (233)
.+......+.++...|++++|..++++++... ..++....+.++..+|.++. .|++++|..++++++.+++..|....
T Consensus 451 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~ 529 (903)
T PRK04841 451 QAEFNALRAQVAINDGDPEEAERLAELALAEL-PLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHY 529 (903)
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC-CCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHH
Confidence 44455567788888999999999999999863 23444456677888999988 89999999999999999999998888
Q ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHccCc--chHHHhHHHHHHHHHhhCCHHHHHHHHHHhhcCCC-CCCc
Q 026767 87 AFDLYRAATNVYIKLEKYADAATFLLRWGLAADKCNAT--NSQCKAYLSAIIVYLYANDFKQAEKCYNDCSQVDA-FLRS 163 (233)
Q Consensus 87 ~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~--~~~a~~~~~lg~~~~~~gd~~~A~~~~~~al~~~~-~~~~ 163 (233)
...++.++|.++...|++++|..++++++.+....+.. ...+..+..+|.++...|++++|...+++++.... ....
T Consensus 530 ~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~ 609 (903)
T PRK04841 530 ALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQ 609 (903)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCch
Confidence 77899999999999999999999999999998876543 22344567889999999999999999999985433 2333
Q ss_pred hHHHHHHHHHHHH-hcCCHHHHHHHHhhc
Q 026767 164 DQNRCATKLISAY-TEGDVEEIKRVAQSS 191 (233)
Q Consensus 164 ~e~~~l~~L~~a~-~~gd~~~a~~~~~~~ 191 (233)
.....+..++.++ ..||.+.|...+.+.
T Consensus 610 ~~~~~~~~la~~~~~~G~~~~A~~~l~~a 638 (903)
T PRK04841 610 QQLQCLAMLAKISLARGDLDNARRYLNRL 638 (903)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4455666677777 799999999988877
No 21
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=99.32 E-value=8.4e-11 Score=98.88 Aligned_cols=167 Identities=12% Similarity=-0.012 Sum_probs=145.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcC--C--h
Q 026767 10 KHMESAAALAKELHNWREVADFYRKASELYNECGRSQPASDALAKAARALE-DAVPEDAIQLYTDACIMLEEDD--K--E 84 (233)
Q Consensus 10 ~~~~~~g~~~~~~g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g--~--~ 84 (233)
...-.+|+.+.-++.+++++++|+.|+.+....+|+.-.-+++..+|.+|. ..|+++|+-+..+|.++.+..+ + .
T Consensus 123 q~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~ 202 (518)
T KOG1941|consen 123 QVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSL 202 (518)
T ss_pred hhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhH
Confidence 445568888888899999999999999999999999999999999999999 7999999999999999999887 2 2
Q ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHccCcchHHHhHHHHHHHHHhhCCHHHHHHHHHHhhcCCC--CCC
Q 026767 85 QMAFDLYRAATNVYIKLEKYADAATFLLRWGLAADKCNATNSQCKAYLSAIIVYLYANDFKQAEKCYNDCSQVDA--FLR 162 (233)
Q Consensus 85 ~~~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~gd~~~A~~~~~~al~~~~--~~~ 162 (233)
.....++..++..+..+|+...|.++++++..+....|++...++++..++.+|...||.+.|...|+++..+.. .++
T Consensus 203 kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~m~~~gdr 282 (518)
T KOG1941|consen 203 KYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAMGTMASLGDR 282 (518)
T ss_pred HHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHHHhhhhhh
Confidence 223457788888999999999999999999999999999999999999999999999999999999999985433 245
Q ss_pred chHHHHHHHHHHHH
Q 026767 163 SDQNRCATKLISAY 176 (233)
Q Consensus 163 ~~e~~~l~~L~~a~ 176 (233)
-++-.++...++..
T Consensus 283 mgqv~al~g~Akc~ 296 (518)
T KOG1941|consen 283 MGQVEALDGAAKCL 296 (518)
T ss_pred HHHHHHHHHHHHHH
Confidence 56667777766644
No 22
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.31 E-value=3.4e-10 Score=98.64 Aligned_cols=168 Identities=12% Similarity=0.047 Sum_probs=138.3
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCChHH
Q 026767 8 AAKHMESAAALAKELHNWREVADFYRKASELYNECGRSQPASDALAKAARALE-DAVPEDAIQLYTDACIMLEEDDKEQM 86 (233)
Q Consensus 8 ~a~~~~~~g~~~~~~g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~~~~ 86 (233)
....+..+|.+|...|++++|+.+|++++.. ++ ....++..++.++. .|++++|++.+++++...+..... .
T Consensus 106 ~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~-----~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~ 178 (389)
T PRK11788 106 RLLALQELGQDYLKAGLLDRAEELFLQLVDE-----GD-FAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRV-E 178 (389)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHcC-----Cc-chHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchH-H
Confidence 4568899999999999999999999999875 22 34567889999999 899999999999999988766543 3
Q ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHccCcchHHHhHHHHHHHHHhhCCHHHHHHHHHHhhcCCCCCCchHH
Q 026767 87 AFDLYRAATNVYIKLEKYADAATFLLRWGLAADKCNATNSQCKAYLSAIIVYLYANDFKQAEKCYNDCSQVDAFLRSDQN 166 (233)
Q Consensus 87 ~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~gd~~~A~~~~~~al~~~~~~~~~e~ 166 (233)
....+..+|.++.+.|++++|+.+|++++.... ....++..+|.++...|++++|.+.|++++.... ..-.
T Consensus 179 ~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p------~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p---~~~~ 249 (389)
T PRK11788 179 IAHFYCELAQQALARGDLDAARALLKKALAADP------QCVRASILLGDLALAQGDYAAAIEALERVEEQDP---EYLS 249 (389)
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCc------CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCh---hhHH
Confidence 345678899999999999999999999987532 2345778999999999999999999999984321 1123
Q ss_pred HHHHHHHHHH-hcCCHHHHHHHHhhc
Q 026767 167 RCATKLISAY-TEGDVEEIKRVAQSS 191 (233)
Q Consensus 167 ~~l~~L~~a~-~~gd~~~a~~~~~~~ 191 (233)
.++..++.++ ..|+.+.|...+++.
T Consensus 250 ~~~~~l~~~~~~~g~~~~A~~~l~~~ 275 (389)
T PRK11788 250 EVLPKLMECYQALGDEAEGLEFLRRA 275 (389)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4567788888 799999999999887
No 23
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.31 E-value=8.2e-10 Score=89.93 Aligned_cols=179 Identities=13% Similarity=0.013 Sum_probs=137.5
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCCh
Q 026767 6 WDAAKHMESAAALAKELHNWREVADFYRKASELYNECGRSQPASDALAKAARALE-DAVPEDAIQLYTDACIMLEEDDKE 84 (233)
Q Consensus 6 ~~~a~~~~~~g~~~~~~g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~~ 84 (233)
...+..+.+.|..+...|++++|+..|++++..+.. ......++..+|.++. .|++++|+..|+++++.++.....
T Consensus 30 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~---~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~ 106 (235)
T TIGR03302 30 EWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPF---SPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDA 106 (235)
T ss_pred cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC---chhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCch
Confidence 445678899999999999999999999999887631 1234567889999999 899999999999999999865543
Q ss_pred HHHHHHHHHHHHHHHHh--------ccHHHHHHHHHHHHHHHhHccCcc-----------hHHHhHHHHHHHHHhhCCHH
Q 026767 85 QMAFDLYRAATNVYIKL--------EKYADAATFLLRWGLAADKCNATN-----------SQCKAYLSAIIVYLYANDFK 145 (233)
Q Consensus 85 ~~~~~~l~~lg~~~~~~--------g~~~~A~~~~~~al~~~~~~~~~~-----------~~a~~~~~lg~~~~~~gd~~ 145 (233)
..++..+|.++... |++++|+..|++++.......... ........+|.+++..|++.
T Consensus 107 ---~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~ 183 (235)
T TIGR03302 107 ---DYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYV 183 (235)
T ss_pred ---HHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChH
Confidence 24678888888876 899999999999987543321111 01112357899999999999
Q ss_pred HHHHHHHHhhcCCCCCCchHHHHHHHHHHHH-hcCCHHHHHHHHhhc
Q 026767 146 QAEKCYNDCSQVDAFLRSDQNRCATKLISAY-TEGDVEEIKRVAQSS 191 (233)
Q Consensus 146 ~A~~~~~~al~~~~~~~~~e~~~l~~L~~a~-~~gd~~~a~~~~~~~ 191 (233)
+|+..|++++....- ......++..++.++ ..|+.++|..+.+..
T Consensus 184 ~A~~~~~~al~~~p~-~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l 229 (235)
T TIGR03302 184 AAINRFETVVENYPD-TPATEEALARLVEAYLKLGLKDLAQDAAAVL 229 (235)
T ss_pred HHHHHHHHHHHHCCC-CcchHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 999999999843211 233467788999999 799999999876654
No 24
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=99.31 E-value=4.8e-11 Score=80.49 Aligned_cols=74 Identities=16% Similarity=0.196 Sum_probs=63.4
Q ss_pred HHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCChH-HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhH
Q 026767 47 PASDALAKAARALE-DAVPEDAIQLYTDACIMLEEDDKEQ-MAFDLYRAATNVYIKLEKYADAATFLLRWGLAADK 120 (233)
Q Consensus 47 ~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~~~-~~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~ 120 (233)
..+.++.++|.+|. .|++++|+.+|++|+++.+..|+.. ..+.++.++|.++..+|++++|+++++++++++++
T Consensus 3 ~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i~~k 78 (78)
T PF13424_consen 3 DTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDIFEK 78 (78)
T ss_dssp HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcC
Confidence 46788999999999 7999999999999999988888655 45789999999999999999999999999988753
No 25
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.30 E-value=3.9e-10 Score=95.36 Aligned_cols=168 Identities=14% Similarity=0.015 Sum_probs=126.3
Q ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCC
Q 026767 5 PWDAAKHMESAAALAKELHNWREVADFYRKASELYNECGRSQPASDALAKAARALE-DAVPEDAIQLYTDACIMLEEDDK 83 (233)
Q Consensus 5 ~~~~a~~~~~~g~~~~~~g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~ 83 (233)
+...+..|.+.|.+|...|++++|+..|++|+.+. + .-+.++.++|.++. .|++++|+..|.+++++.+..
T Consensus 60 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-----P-~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~-- 131 (296)
T PRK11189 60 DEERAQLHYERGVLYDSLGLRALARNDFSQALALR-----P-DMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTY-- 131 (296)
T ss_pred cHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-----C-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC--
Confidence 45668889999999999999999999999999974 3 34678999999999 799999999999999987653
Q ss_pred hHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHccCcchHHHhHHHHHHHHHhhCCHHHHHHHHHHhhc-C-CCC-
Q 026767 84 EQMAFDLYRAATNVYIKLEKYADAATFLLRWGLAADKCNATNSQCKAYLSAIIVYLYANDFKQAEKCYNDCSQ-V-DAF- 160 (233)
Q Consensus 84 ~~~~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~gd~~~A~~~~~~al~-~-~~~- 160 (233)
..++.++|.++...|++++|++.|++++.+.... . ...+. ..+....+++++|...|++... . +..
T Consensus 132 ----~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~---~--~~~~~--~~l~~~~~~~~~A~~~l~~~~~~~~~~~~ 200 (296)
T PRK11189 132 ----NYAYLNRGIALYYGGRYELAQDDLLAFYQDDPND---P--YRALW--LYLAESKLDPKQAKENLKQRYEKLDKEQW 200 (296)
T ss_pred ----HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC---H--HHHHH--HHHHHccCCHHHHHHHHHHHHhhCCcccc
Confidence 2478999999999999999999999999753211 1 11111 1123456778888888866541 1 110
Q ss_pred ---------CCc---------------------hHHHHHHHHHHHH-hcCCHHHHHHHHhhc
Q 026767 161 ---------LRS---------------------DQNRCATKLISAY-TEGDVEEIKRVAQSS 191 (233)
Q Consensus 161 ---------~~~---------------------~e~~~l~~L~~a~-~~gd~~~a~~~~~~~ 191 (233)
... ..+.+...||.++ ..||.++|..+++++
T Consensus 201 ~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~A 262 (296)
T PRK11189 201 GWNIVEFYLGKISEETLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLA 262 (296)
T ss_pred HHHHHHHHccCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 011 1123455678888 799999999999998
No 26
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.28 E-value=3e-10 Score=109.29 Aligned_cols=113 Identities=13% Similarity=0.045 Sum_probs=66.9
Q ss_pred CCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHccCcchHHHhHHHHHHHHHhh
Q 026767 62 AVPEDAIQLYTDACIMLEEDDKEQMAFDLYRAATNVYIKLEKYADAATFLLRWGLAADKCNATNSQCKAYLSAIIVYLYA 141 (233)
Q Consensus 62 g~~~~A~~~~~~Al~~~~~~g~~~~~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~ 141 (233)
|++++|+.+|++++++.+. ...+.++|.++.++|++++|+..|++++.+ .+....++.++|.++...
T Consensus 590 Gr~~eAl~~~~~AL~l~P~-------~~a~~~LA~~l~~lG~~deA~~~l~~AL~l------~Pd~~~a~~nLG~aL~~~ 656 (987)
T PRK09782 590 GQPELALNDLTRSLNIAPS-------ANAYVARATIYRQRHNVPAAVSDLRAALEL------EPNNSNYQAALGYALWDS 656 (987)
T ss_pred CCHHHHHHHHHHHHHhCCC-------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHC
Confidence 6666666666666655541 135566666666666666666666666654 222334556666666666
Q ss_pred CCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHH-hcCCHHHHHHHHhhc
Q 026767 142 NDFKQAEKCYNDCSQVDAFLRSDQNRCATKLISAY-TEGDVEEIKRVAQSS 191 (233)
Q Consensus 142 gd~~~A~~~~~~al~~~~~~~~~e~~~l~~L~~a~-~~gd~~~a~~~~~~~ 191 (233)
|++++|+..|++++.+. +....+...++.++ ..||++.|..+++++
T Consensus 657 G~~eeAi~~l~~AL~l~----P~~~~a~~nLA~al~~lGd~~eA~~~l~~A 703 (987)
T PRK09782 657 GDIAQSREMLERAHKGL----PDDPALIRQLAYVNQRLDDMAATQHYARLV 703 (987)
T ss_pred CCHHHHHHHHHHHHHhC----CCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 66666666666666332 11234555666655 566666666666655
No 27
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.27 E-value=1.4e-10 Score=100.13 Aligned_cols=157 Identities=13% Similarity=0.127 Sum_probs=134.6
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCChHHHHHHH
Q 026767 13 ESAAALAKELHNWREVADFYRKASELYNECGRSQPASDALAKAARALE-DAVPEDAIQLYTDACIMLEEDDKEQMAFDLY 91 (233)
Q Consensus 13 ~~~g~~~~~~g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~~~~~~~~l 91 (233)
.-+|+-|...+++++|+.||++|+++-. +-..+|+-+|.=|. ..+.+.|++.|++|+++-+.. -.++
T Consensus 334 CiIaNYYSlr~eHEKAv~YFkRALkLNp------~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~D------yRAW 401 (559)
T KOG1155|consen 334 CIIANYYSLRSEHEKAVMYFKRALKLNP------KYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRD------YRAW 401 (559)
T ss_pred eeehhHHHHHHhHHHHHHHHHHHHhcCc------chhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchh------HHHH
Confidence 3467888888999999999999999842 45667888999888 799999999999999998763 2578
Q ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHHhHccCcchHHHhHHHHHHHHHhhCCHHHHHHHHHHhhcCCCCCCchHHHHHHH
Q 026767 92 RAATNVYIKLEKYADAATFLLRWGLAADKCNATNSQCKAYLSAIIVYLYANDFKQAEKCYNDCSQVDAFLRSDQNRCATK 171 (233)
Q Consensus 92 ~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~gd~~~A~~~~~~al~~~~~~~~~e~~~l~~ 171 (233)
..+|..|.-++-+-=|+-+|++|..+ .+.-.+.+..+|.||-++++.++|+++|.+++..... |+.++..
T Consensus 402 YGLGQaYeim~Mh~YaLyYfqkA~~~------kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dt----e~~~l~~ 471 (559)
T KOG1155|consen 402 YGLGQAYEIMKMHFYALYYFQKALEL------KPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDT----EGSALVR 471 (559)
T ss_pred hhhhHHHHHhcchHHHHHHHHHHHhc------CCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcccc----chHHHHH
Confidence 89999999999999999999999976 3445568899999999999999999999999854422 6789999
Q ss_pred HHHHH-hcCCHHHHHHHHhhc
Q 026767 172 LISAY-TEGDVEEIKRVAQSS 191 (233)
Q Consensus 172 L~~a~-~~gd~~~a~~~~~~~ 191 (233)
|+++| +.+|.++|..+.+.+
T Consensus 472 LakLye~l~d~~eAa~~yek~ 492 (559)
T KOG1155|consen 472 LAKLYEELKDLNEAAQYYEKY 492 (559)
T ss_pred HHHHHHHHHhHHHHHHHHHHH
Confidence 99999 789999999888887
No 28
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.27 E-value=1.7e-10 Score=111.05 Aligned_cols=146 Identities=8% Similarity=-0.064 Sum_probs=114.3
Q ss_pred CCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHh
Q 026767 23 HNWREVADFYRKASELYNECGRSQPASDALAKAARALE-DAVPEDAIQLYTDACIMLEEDDKEQMAFDLYRAATNVYIKL 101 (233)
Q Consensus 23 g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~~~~~~~~l~~lg~~~~~~ 101 (233)
|++++|+.+|++|+.+. |. +.++.++|.++. .|++++|+.+|++++.+.+... .++.++|.++...
T Consensus 590 Gr~~eAl~~~~~AL~l~-----P~--~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~------~a~~nLG~aL~~~ 656 (987)
T PRK09782 590 GQPELALNDLTRSLNIA-----PS--ANAYVARATIYRQRHNVPAAVSDLRAALELEPNNS------NYQAALGYALWDS 656 (987)
T ss_pred CCHHHHHHHHHHHHHhC-----CC--HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHC
Confidence 55555555555555442 22 456788899999 7999999999999999976532 5899999999999
Q ss_pred ccHHHHHHHHHHHHHHHhHccCcchHHHhHHHHHHHHHhhCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHH-hcCC
Q 026767 102 EKYADAATFLLRWGLAADKCNATNSQCKAYLSAIIVYLYANDFKQAEKCYNDCSQVDAFLRSDQNRCATKLISAY-TEGD 180 (233)
Q Consensus 102 g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~gd~~~A~~~~~~al~~~~~~~~~e~~~l~~L~~a~-~~gd 180 (233)
|++++|+.+|++++.+ .+....++.++|.++..+|++++|+.+|++++.+.. .-+.+....++.. ...+
T Consensus 657 G~~eeAi~~l~~AL~l------~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P----~~a~i~~~~g~~~~~~~~ 726 (987)
T PRK09782 657 GDIAQSREMLERAHKG------LPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDID----NQALITPLTPEQNQQRFN 726 (987)
T ss_pred CCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC----CCchhhhhhhHHHHHHHH
Confidence 9999999999999975 334456889999999999999999999999985431 2245555666666 5677
Q ss_pred HHHHHHHHhhc
Q 026767 181 VEEIKRVAQSS 191 (233)
Q Consensus 181 ~~~a~~~~~~~ 191 (233)
+..+.+.+++.
T Consensus 727 ~~~a~~~~~r~ 737 (987)
T PRK09782 727 FRRLHEEVGRR 737 (987)
T ss_pred HHHHHHHHHHH
Confidence 88888888877
No 29
>PRK12370 invasion protein regulator; Provisional
Probab=99.22 E-value=5.8e-10 Score=102.06 Aligned_cols=162 Identities=10% Similarity=0.004 Sum_probs=121.8
Q ss_pred HHHHHHHHHHHHH---------cCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHH
Q 026767 9 AKHMESAAALAKE---------LHNWREVADFYRKASELYNECGRSQPASDALAKAARALE-DAVPEDAIQLYTDACIML 78 (233)
Q Consensus 9 a~~~~~~g~~~~~---------~g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~ 78 (233)
+.++..+|.+|.. .+++++|+.++++|+++- + .-+.++..+|.++. .|++++|+.+|++|+++.
T Consensus 295 a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ld-----P-~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~ 368 (553)
T PRK12370 295 IAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELD-----H-NNPQALGLLGLINTIHSEYIVGSLLFKQANLLS 368 (553)
T ss_pred HHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcC-----C-CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 4566777776643 244789999999998873 3 23567788899988 799999999999999987
Q ss_pred HhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHccCcchHHHhHHHHHHHHHhhCCHHHHHHHHHHhhcCC
Q 026767 79 EEDDKEQMAFDLYRAATNVYIKLEKYADAATFLLRWGLAADKCNATNSQCKAYLSAIIVYLYANDFKQAEKCYNDCSQVD 158 (233)
Q Consensus 79 ~~~g~~~~~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~gd~~~A~~~~~~al~~~ 158 (233)
+.. ..++..+|.++...|++++|+..+++++.+. +.. ...+...+.+++..|++++|+..+++++...
T Consensus 369 P~~------~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~-----P~~-~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~ 436 (553)
T PRK12370 369 PIS------ADIKYYYGWNLFMAGQLEEALQTINECLKLD-----PTR-AAAGITKLWITYYHTGIDDAIRLGDELRSQH 436 (553)
T ss_pred CCC------HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-----CCC-hhhHHHHHHHHHhccCHHHHHHHHHHHHHhc
Confidence 642 2478899999999999999999999999762 111 1233445556777899999999999987332
Q ss_pred CCCCchHHHHHHHHHHHH-hcCCHHHHHHHHhhc
Q 026767 159 AFLRSDQNRCATKLISAY-TEGDVEEIKRVAQSS 191 (233)
Q Consensus 159 ~~~~~~e~~~l~~L~~a~-~~gd~~~a~~~~~~~ 191 (233)
. .........++.++ ..|+.++|...+++.
T Consensus 437 ~---p~~~~~~~~la~~l~~~G~~~eA~~~~~~~ 467 (553)
T PRK12370 437 L---QDNPILLSMQVMFLSLKGKHELARKLTKEI 467 (553)
T ss_pred c---ccCHHHHHHHHHHHHhCCCHHHHHHHHHHh
Confidence 1 11233556677777 789999999998876
No 30
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.22 E-value=4.6e-09 Score=101.23 Aligned_cols=151 Identities=11% Similarity=0.057 Sum_probs=129.8
Q ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCC
Q 026767 5 PWDAAKHMESAAALAKELHNWREVADFYRKASELYNECGRSQPASDALAKAARALE-DAVPEDAIQLYTDACIMLEEDDK 83 (233)
Q Consensus 5 ~~~~a~~~~~~g~~~~~~g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~ 83 (233)
.+..+.+...+|.++...|++++|..++++++..++..|+....+.++.++|.++. .|++++|..++++++++.+..+.
T Consensus 487 ~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~ 566 (903)
T PRK04841 487 YYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHL 566 (903)
T ss_pred HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcc
Confidence 34456677888999999999999999999999999999999999999999999999 89999999999999999998763
Q ss_pred h--HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHccCcchHHHhHHHHHHHHHhhCCHHHHHHHHHHhhc
Q 026767 84 E--QMAFDLYRAATNVYIKLEKYADAATFLLRWGLAADKCNATNSQCKAYLSAIIVYLYANDFKQAEKCYNDCSQ 156 (233)
Q Consensus 84 ~--~~~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~gd~~~A~~~~~~al~ 156 (233)
. .....++..+|.++...|++++|...+++++.+....+ ......++..++.++...|++.+|...++++..
T Consensus 567 ~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~-~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~ 640 (903)
T PRK04841 567 EQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQ-PQQQLQCLAMLAKISLARGDLDNARRYLNRLEN 640 (903)
T ss_pred ccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccC-chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 2 22334567889999999999999999999999887655 334556778899999999999999999988863
No 31
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.22 E-value=7.1e-10 Score=103.37 Aligned_cols=156 Identities=9% Similarity=0.011 Sum_probs=116.1
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh-hCCHHH----HHHHHHHHHHHHHhcCChHHHH
Q 026767 14 SAAALAKELHNWREVADFYRKASELYNECGRSQPASDALAKAARALE-DAVPED----AIQLYTDACIMLEEDDKEQMAF 88 (233)
Q Consensus 14 ~~g~~~~~~g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~-~g~~~~----A~~~~~~Al~~~~~~g~~~~~~ 88 (233)
.++.++...|++++|+..|++++.+. + ....++.++|.++. .|++++ |+.+|++++++.+.. .
T Consensus 217 ~l~~~l~~~g~~~eA~~~~~~al~~~-----p-~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~------~ 284 (656)
T PRK15174 217 LAVDTLCAVGKYQEAIQTGESALARG-----L-DGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDN------V 284 (656)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhcC-----C-CCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCC------H
Confidence 34566667778888888888777652 1 23567788898888 788875 789999998876642 3
Q ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHccCcchHHHhHHHHHHHHHhhCCHHHHHHHHHHhhcCCCCCCchHHHH
Q 026767 89 DLYRAATNVYIKLEKYADAATFLLRWGLAADKCNATNSQCKAYLSAIIVYLYANDFKQAEKCYNDCSQVDAFLRSDQNRC 168 (233)
Q Consensus 89 ~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~gd~~~A~~~~~~al~~~~~~~~~e~~~ 168 (233)
.++.++|.++...|++++|+.++++++.+. +....++..+|.++...|++++|+..|++++..... ....
T Consensus 285 ~a~~~lg~~l~~~g~~~eA~~~l~~al~l~------P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~----~~~~ 354 (656)
T PRK15174 285 RIVTLYADALIRTGQNEKAIPLLQQSLATH------PDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGV----TSKW 354 (656)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc----chHH
Confidence 578889999999999999999999988752 223456778899999999999999999988743211 1223
Q ss_pred HHHHHHHH-hcCCHHHHHHHHhhc
Q 026767 169 ATKLISAY-TEGDVEEIKRVAQSS 191 (233)
Q Consensus 169 l~~L~~a~-~~gd~~~a~~~~~~~ 191 (233)
...++.++ ..|+.++|...++++
T Consensus 355 ~~~~a~al~~~G~~deA~~~l~~a 378 (656)
T PRK15174 355 NRYAAAALLQAGKTSEAESVFEHY 378 (656)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHH
Confidence 34456666 789999999988887
No 32
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.20 E-value=2.9e-10 Score=101.70 Aligned_cols=161 Identities=8% Similarity=-0.009 Sum_probs=106.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH-------H---------------------cCCchHHHHHHHHHHHHhh
Q 026767 9 AKHMESAAALAKELHNWREVADFYRKASELYN-------E---------------------CGRSQPASDALAKAARALE 60 (233)
Q Consensus 9 a~~~~~~g~~~~~~g~~~eA~~~~~~A~~l~~-------~---------------------~g~~~~~a~~l~~lg~~~~ 60 (233)
-++|.-+|++|.-+++++.|+.+|++|+.+-. - .+--..--++|..+|.+|.
T Consensus 421 PesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~ 500 (638)
T KOG1126|consen 421 PESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRHYNAWYGLGTVYL 500 (638)
T ss_pred cHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchhhHHHHhhhhhee
Confidence 46789999999999999999999999998621 1 1111222345666677777
Q ss_pred -hCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHccCcchHHHhHHHHHHHHH
Q 026767 61 -DAVPEDAIQLYTDACIMLEEDDKEQMAFDLYRAATNVYIKLEKYADAATFLLRWGLAADKCNATNSQCKAYLSAIIVYL 139 (233)
Q Consensus 61 -~g~~~~A~~~~~~Al~~~~~~g~~~~~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~ 139 (233)
++.++.|.-+|++|+++-+.. ..++..+|.++.++|+.++|+.+|++|+.+ ++. ...+.+.-+.++.
T Consensus 501 Kqek~e~Ae~~fqkA~~INP~n------svi~~~~g~~~~~~k~~d~AL~~~~~A~~l-----d~k-n~l~~~~~~~il~ 568 (638)
T KOG1126|consen 501 KQEKLEFAEFHFQKAVEINPSN------SVILCHIGRIQHQLKRKDKALQLYEKAIHL-----DPK-NPLCKYHRASILF 568 (638)
T ss_pred ccchhhHHHHHHHhhhcCCccc------hhHHhhhhHHHHHhhhhhHHHHHHHHHHhc-----CCC-CchhHHHHHHHHH
Confidence 677777777777777766542 135566777777777777777777777754 111 1223456666777
Q ss_pred hhCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHH-hcCCHHHHH
Q 026767 140 YANDFKQAEKCYNDCSQVDAFLRSDQNRCATKLISAY-TEGDVEEIK 185 (233)
Q Consensus 140 ~~gd~~~A~~~~~~al~~~~~~~~~e~~~l~~L~~a~-~~gd~~~a~ 185 (233)
.++++++|+..+++...+. ..|.-++..||..| +.|....|.
T Consensus 569 ~~~~~~eal~~LEeLk~~v----P~es~v~~llgki~k~~~~~~~Al 611 (638)
T KOG1126|consen 569 SLGRYVEALQELEELKELV----PQESSVFALLGKIYKRLGNTDLAL 611 (638)
T ss_pred hhcchHHHHHHHHHHHHhC----cchHHHHHHHHHHHHHHccchHHH
Confidence 7777777777777665433 35666777777777 556555443
No 33
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.19 E-value=1.3e-09 Score=107.55 Aligned_cols=173 Identities=12% Similarity=0.035 Sum_probs=111.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCchH--------HHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHH
Q 026767 9 AKHMESAAALAKELHNWREVADFYRKASELYNECGRSQP--------ASDALAKAARALE-DAVPEDAIQLYTDACIMLE 79 (233)
Q Consensus 9 a~~~~~~g~~~~~~g~~~eA~~~~~~A~~l~~~~g~~~~--------~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~ 79 (233)
+.++..+|.+|...|++++|+.+|++++.+......... ....+...|.++. .|++++|+.+|++++++.+
T Consensus 303 ~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P 382 (1157)
T PRK11447 303 SEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVDN 382 (1157)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence 456677777777788888888888887776543322110 1123344566666 6888888888888887754
Q ss_pred hcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHccCc------------ch---------------------
Q 026767 80 EDDKEQMAFDLYRAATNVYIKLEKYADAATFLLRWGLAADKCNAT------------NS--------------------- 126 (233)
Q Consensus 80 ~~g~~~~~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~------------~~--------------------- 126 (233)
.. ..++..+|.++...|++++|+++|++++.+....... ..
T Consensus 383 ~~------~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~ 456 (1157)
T PRK11447 383 TD------SYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQSPEKALAFIASLSASQRRSIDDIE 456 (1157)
T ss_pred CC------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHH
Confidence 31 2467778888888888888888888887642211000 00
Q ss_pred ---HHHhHHHHHHHHHhhCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHH-hcCCHHHHHHHHhhc
Q 026767 127 ---QCKAYLSAIIVYLYANDFKQAEKCYNDCSQVDAFLRSDQNRCATKLISAY-TEGDVEEIKRVAQSS 191 (233)
Q Consensus 127 ---~a~~~~~lg~~~~~~gd~~~A~~~~~~al~~~~~~~~~e~~~l~~L~~a~-~~gd~~~a~~~~~~~ 191 (233)
....+..+|.++...|++.+|+..|++++.... ....+...++.++ ..|++++|...+++.
T Consensus 457 ~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P----~~~~~~~~LA~~~~~~G~~~~A~~~l~~a 521 (1157)
T PRK11447 457 RSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDP----GSVWLTYRLAQDLRQAGQRSQADALMRRL 521 (1157)
T ss_pred HHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC----CCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 011233456677778888888888888874421 1234566777777 788888888888877
No 34
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.19 E-value=1.3e-09 Score=107.53 Aligned_cols=162 Identities=15% Similarity=0.129 Sum_probs=126.7
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCChH-H-----
Q 026767 14 SAAALAKELHNWREVADFYRKASELYNECGRSQPASDALAKAARALE-DAVPEDAIQLYTDACIMLEEDDKEQ-M----- 86 (233)
Q Consensus 14 ~~g~~~~~~g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~~~-~----- 86 (233)
..|.++...|++++|+.+|++++.+.- .-..++..+|.++. .|++++|+.+|++++++.+...... .
T Consensus 274 ~~G~~~~~~g~~~~A~~~l~~aL~~~P------~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~ 347 (1157)
T PRK11447 274 AQGLAAVDSGQGGKAIPELQQAVRANP------KDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLK 347 (1157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCC------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHH
Confidence 347888889999999999999999742 23577899999999 8999999999999999887654321 0
Q ss_pred --HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHccCcchHHHhHHHHHHHHHhhCCHHHHHHHHHHhhcCCCCCCch
Q 026767 87 --AFDLYRAATNVYIKLEKYADAATFLLRWGLAADKCNATNSQCKAYLSAIIVYLYANDFKQAEKCYNDCSQVDAFLRSD 164 (233)
Q Consensus 87 --~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~gd~~~A~~~~~~al~~~~~~~~~ 164 (233)
....+...|.++...|++++|+.+|++++.+. +....++..+|.++...|++++|+++|++++.+...
T Consensus 348 ~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~------P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~---- 417 (1157)
T PRK11447 348 VNRYWLLIQQGDAALKANNLAQAERLYQQARQVD------NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPG---- 417 (1157)
T ss_pred hhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC----
Confidence 11234567889999999999999999999762 233457889999999999999999999999855321
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHhhc
Q 026767 165 QNRCATKLISAYTEGDVEEIKRVAQSS 191 (233)
Q Consensus 165 e~~~l~~L~~a~~~gd~~~a~~~~~~~ 191 (233)
...++..|+..+..++.++|...++..
T Consensus 418 ~~~a~~~L~~l~~~~~~~~A~~~l~~l 444 (1157)
T PRK11447 418 NTNAVRGLANLYRQQSPEKALAFIASL 444 (1157)
T ss_pred CHHHHHHHHHHHHhcCHHHHHHHHHhC
Confidence 134567777777666778887766543
No 35
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.19 E-value=3e-09 Score=99.24 Aligned_cols=119 Identities=12% Similarity=-0.040 Sum_probs=84.2
Q ss_pred HHhh-hCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHH----HHHHHHHHHHHHhHccCcchHHHhH
Q 026767 57 RALE-DAVPEDAIQLYTDACIMLEEDDKEQMAFDLYRAATNVYIKLEKYAD----AATFLLRWGLAADKCNATNSQCKAY 131 (233)
Q Consensus 57 ~~~~-~g~~~~A~~~~~~Al~~~~~~g~~~~~~~~l~~lg~~~~~~g~~~~----A~~~~~~al~~~~~~~~~~~~a~~~ 131 (233)
.++. .|++++|+..|++++++.+.. ..++.++|.++...|++++ |+..|++++.+. +....++
T Consensus 220 ~~l~~~g~~~eA~~~~~~al~~~p~~------~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~------P~~~~a~ 287 (656)
T PRK15174 220 DTLCAVGKYQEAIQTGESALARGLDG------AALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFN------SDNVRIV 287 (656)
T ss_pred HHHHHCCCHHHHHHHHHHHHhcCCCC------HHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhC------CCCHHHH
Confidence 3344 466666666666666543221 2467778888888888885 788888888652 2345678
Q ss_pred HHHHHHHHhhCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHH-hcCCHHHHHHHHhhc
Q 026767 132 LSAIIVYLYANDFKQAEKCYNDCSQVDAFLRSDQNRCATKLISAY-TEGDVEEIKRVAQSS 191 (233)
Q Consensus 132 ~~lg~~~~~~gd~~~A~~~~~~al~~~~~~~~~e~~~l~~L~~a~-~~gd~~~a~~~~~~~ 191 (233)
.++|.++..+|++++|+..+++++.... ....+...++.++ ..|++++|...+++.
T Consensus 288 ~~lg~~l~~~g~~~eA~~~l~~al~l~P----~~~~a~~~La~~l~~~G~~~eA~~~l~~a 344 (656)
T PRK15174 288 TLYADALIRTGQNEKAIPLLQQSLATHP----DLPYVRAMYARALRQVGQYTAASDEFVQL 344 (656)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCC----CCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 8889999999999999999999885421 1234566678888 789999998888877
No 36
>PRK12370 invasion protein regulator; Provisional
Probab=99.18 E-value=2.2e-09 Score=98.34 Aligned_cols=131 Identities=9% Similarity=-0.039 Sum_probs=105.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCChHHH
Q 026767 9 AKHMESAAALAKELHNWREVADFYRKASELYNECGRSQPASDALAKAARALE-DAVPEDAIQLYTDACIMLEEDDKEQMA 87 (233)
Q Consensus 9 a~~~~~~g~~~~~~g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~~~~~ 87 (233)
+.++..+|.++...|++++|+.+|++|+.+. | .-+.++..+|.++. .|++++|+.+|++|+++.+...
T Consensus 338 ~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-----P-~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~----- 406 (553)
T PRK12370 338 PQALGLLGLINTIHSEYIVGSLLFKQANLLS-----P-ISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRA----- 406 (553)
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-----C-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCh-----
Confidence 4567788999999999999999999999883 3 23557889999999 7999999999999999977532
Q ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHccCcchHHHhHHHHHHHHHhhCCHHHHHHHHHHhhc
Q 026767 88 FDLYRAATNVYIKLEKYADAATFLLRWGLAADKCNATNSQCKAYLSAIIVYLYANDFKQAEKCYNDCSQ 156 (233)
Q Consensus 88 ~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~gd~~~A~~~~~~al~ 156 (233)
.+...++.++...|++++|+..+++++... ++.....+..+|.++..+|++++|...+++...
T Consensus 407 -~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~-----~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~ 469 (553)
T PRK12370 407 -AAGITKLWITYYHTGIDDAIRLGDELRSQH-----LQDNPILLSMQVMFLSLKGKHELARKLTKEIST 469 (553)
T ss_pred -hhHHHHHHHHHhccCHHHHHHHHHHHHHhc-----cccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhh
Confidence 123345556777999999999999987531 223344678999999999999999999988753
No 37
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.17 E-value=1.9e-10 Score=102.87 Aligned_cols=174 Identities=9% Similarity=0.061 Sum_probs=137.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH---------------HcC-------------CchHHHHHHHHHHHHhh
Q 026767 9 AKHMESAAALAKELHNWREVADFYRKASELYN---------------ECG-------------RSQPASDALAKAARALE 60 (233)
Q Consensus 9 a~~~~~~g~~~~~~g~~~eA~~~~~~A~~l~~---------------~~g-------------~~~~~a~~l~~lg~~~~ 60 (233)
..++.++|..|.++++|++|..+|+.+-++.- -.. .-...-.+|--+|.+|.
T Consensus 353 ~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq~Li~~~~~sPesWca~GNcfS 432 (638)
T KOG1126|consen 353 GWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQDLIDTDPNSPESWCALGNCFS 432 (638)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHHHHHhhCCCCcHHHHHhcchhh
Confidence 36788999999999999999999998877521 000 00112245667799999
Q ss_pred -hCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHccCcchHHHhHHHHHHHHH
Q 026767 61 -DAVPEDAIQLYTDACIMLEEDDKEQMAFDLYRAATNVYIKLEKYADAATFLLRWGLAADKCNATNSQCKAYLSAIIVYL 139 (233)
Q Consensus 61 -~g~~~~A~~~~~~Al~~~~~~g~~~~~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~ 139 (233)
+++++.||++|+||+.+-+.. +.++.-+|.=++.+.+|++|..+|+.|+.+ .....++++.+|.||+
T Consensus 433 LQkdh~~Aik~f~RAiQldp~f------aYayTLlGhE~~~~ee~d~a~~~fr~Al~~------~~rhYnAwYGlG~vy~ 500 (638)
T KOG1126|consen 433 LQKDHDTAIKCFKRAIQLDPRF------AYAYTLLGHESIATEEFDKAMKSFRKALGV------DPRHYNAWYGLGTVYL 500 (638)
T ss_pred hhhHHHHHHHHHHHhhccCCcc------chhhhhcCChhhhhHHHHhHHHHHHhhhcC------CchhhHHHHhhhhhee
Confidence 899999999999999886642 357788888889999999999999999854 3445678999999999
Q ss_pred hhCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHH-hcCCHHHHHHHHhhc-ccccchH
Q 026767 140 YANDFKQAEKCYNDCSQVDAFLRSDQNRCATKLISAY-TEGDVEEIKRVAQSS-AISNLDH 198 (233)
Q Consensus 140 ~~gd~~~A~~~~~~al~~~~~~~~~e~~~l~~L~~a~-~~gd~~~a~~~~~~~-~~~~ld~ 198 (233)
+++.++.|+-+|++|+.+. .....++..+|..+ +.|+.++|...++++ .++..++
T Consensus 501 Kqek~e~Ae~~fqkA~~IN----P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~ 557 (638)
T KOG1126|consen 501 KQEKLEFAEFHFQKAVEIN----PSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNP 557 (638)
T ss_pred ccchhhHHHHHHHhhhcCC----ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCc
Confidence 9999999999999998764 23355777788777 789999999999999 6666655
No 38
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=99.16 E-value=3.2e-09 Score=82.26 Aligned_cols=115 Identities=12% Similarity=-0.076 Sum_probs=86.4
Q ss_pred ChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcC
Q 026767 4 SPWDAAKHMESAAALAKELHNWREVADFYRKASELYNECGRSQPASDALAKAARALE-DAVPEDAIQLYTDACIMLEEDD 82 (233)
Q Consensus 4 ~~~~~a~~~~~~g~~~~~~g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g 82 (233)
+....+..+.++|.++...|++++|+.+|++|+.+. .++...+.++.++|.++. .|++++|+.+|++|+.+.+..+
T Consensus 30 ~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~---~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~ 106 (168)
T CHL00033 30 SGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLE---IDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLP 106 (168)
T ss_pred chhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcc---ccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcH
Confidence 345567888999999988999999999999998874 234445678899999999 7999999999999998855443
Q ss_pred C-hHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHc
Q 026767 83 K-EQMAFDLYRAATNVYIKLEKYADAATFLLRWGLAADKC 121 (233)
Q Consensus 83 ~-~~~~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~ 121 (233)
. ....+.++.++|.++..+|++..|+..+.+++..+++.
T Consensus 107 ~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a 146 (168)
T CHL00033 107 QALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQA 146 (168)
T ss_pred HHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHH
Confidence 1 22234455555666668888888888888888776553
No 39
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.15 E-value=4.8e-09 Score=90.78 Aligned_cols=182 Identities=18% Similarity=0.144 Sum_probs=144.3
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCChHH
Q 026767 8 AAKHMESAAALAKELHNWREVADFYRKASELYNECGRSQPASDALAKAARALE-DAVPEDAIQLYTDACIMLEEDDKEQM 86 (233)
Q Consensus 8 ~a~~~~~~g~~~~~~g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~~~~ 86 (233)
-..++.-+|.=|.++++...|++.|++|+++-. .--++|..+|..|. .+.+.=|+-+|++|+++-+...
T Consensus 363 ~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p------~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDs---- 432 (559)
T KOG1155|consen 363 YLSAWTLMGHEYVEMKNTHAAIESYRRAVDINP------RDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDS---- 432 (559)
T ss_pred hhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCc------hhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCch----
Confidence 356778888889999999999999999999852 34567999999999 8999999999999999877543
Q ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHccCcchHHHhHHHHHHHHHhhCCHHHHHHHHHHhhcCC---CCCCc
Q 026767 87 AFDLYRAATNVYIKLEKYADAATFLLRWGLAADKCNATNSQCKAYLSAIIVYLYANDFKQAEKCYNDCSQVD---AFLRS 163 (233)
Q Consensus 87 ~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~gd~~~A~~~~~~al~~~---~~~~~ 163 (233)
..+..+|.+|.++++.++|+.+|.+++.. ++. ++.++..||.+|-.++|+.+|..+|++++... +....
T Consensus 433 --Rlw~aLG~CY~kl~~~~eAiKCykrai~~----~dt--e~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~ 504 (559)
T KOG1155|consen 433 --RLWVALGECYEKLNRLEEAIKCYKRAILL----GDT--EGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDD 504 (559)
T ss_pred --HHHHHHHHHHHHhccHHHHHHHHHHHHhc----ccc--chHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccch
Confidence 46778999999999999999999999965 343 56789999999999999999999999998532 22222
Q ss_pred hHHHHHHHHHHHH-hcCCHHHHHHHHhhc-ccccchHHHHHHhccC
Q 026767 164 DQNRCATKLISAY-TEGDVEEIKRVAQSS-AISNLDHVIIKLARKL 207 (233)
Q Consensus 164 ~e~~~l~~L~~a~-~~gd~~~a~~~~~~~-~~~~ld~~~~~l~~~l 207 (233)
.-..+..-|+.-+ ..+|.++|..++... .....-.+...|.+.+
T Consensus 505 ~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~~~e~eeak~LlRei 550 (559)
T KOG1155|consen 505 ETIKARLFLAEYFKKMKDFDEASYYATLVLKGETECEEAKALLREI 550 (559)
T ss_pred HHHHHHHHHHHHHHhhcchHHHHHHHHHHhcCCchHHHHHHHHHHH
Confidence 2333444477766 789999999988887 5544444555555543
No 40
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=99.15 E-value=3.9e-09 Score=88.99 Aligned_cols=147 Identities=15% Similarity=0.024 Sum_probs=136.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCChHHH
Q 026767 9 AKHMESAAALAKELHNWREVADFYRKASELYNECGRSQPASDALAKAARALE-DAVPEDAIQLYTDACIMLEEDDKEQMA 87 (233)
Q Consensus 9 a~~~~~~g~~~~~~g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~~~~~ 87 (233)
+-++..++..++.+|+...|.++.++|.++..+.||....++++.-+|.||. .|+.+.|-.-|++|..+....|++.+.
T Consensus 206 ~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~m~~~gdrmgq 285 (518)
T KOG1941|consen 206 AMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAMGTMASLGDRMGQ 285 (518)
T ss_pred HHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHHHhhhhhhHHH
Confidence 4456778899999999999999999999999999999999999999999999 899999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhccHHH-----HHHHHHHHHHHHhHccCcchHHHhHHHHHHHHHhhCCHHHHHHHHHHhh
Q 026767 88 FDLYRAATNVYIKLEKYAD-----AATFLLRWGLAADKCNATNSQCKAYLSAIIVYLYANDFKQAEKCYNDCS 155 (233)
Q Consensus 88 ~~~l~~lg~~~~~~g~~~~-----A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~gd~~~A~~~~~~al 155 (233)
..++...+..+....-.++ |+++-++.+++..++|.....-+.+..++.+|..+|+-++=..++.++.
T Consensus 286 v~al~g~Akc~~~~r~~~k~~~Crale~n~r~levA~~IG~K~~vlK~hcrla~iYrs~gl~d~~~~h~~ra~ 358 (518)
T KOG1941|consen 286 VEALDGAAKCLETLRLQNKICNCRALEFNTRLLEVASSIGAKLSVLKLHCRLASIYRSKGLQDELRAHVVRAH 358 (518)
T ss_pred HHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhccchhHHHHHHHHHH
Confidence 9999999999988877777 9999999999999999999999999999999999998888777777664
No 41
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.14 E-value=1.5e-09 Score=86.35 Aligned_cols=151 Identities=11% Similarity=-0.027 Sum_probs=126.5
Q ss_pred CCchHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHc
Q 026767 43 GRSQPASDALAKAARALE-DAVPEDAIQLYTDACIMLEEDDKEQMAFDLYRAATNVYIKLEKYADAATFLLRWGLAADKC 121 (233)
Q Consensus 43 g~~~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~~~~~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~ 121 (233)
-+...++.+...+|.-|. .|++..|...+++|+++-+.. ..++..++.+|...|+.+.|-+.|++|+.+
T Consensus 29 ~~~~~aa~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~------~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl---- 98 (250)
T COG3063 29 TDRNEAAKARLQLALGYLQQGDYAQAKKNLEKALEHDPSY------YLAHLVRAHYYQKLGENDLADESYRKALSL---- 98 (250)
T ss_pred ccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc------HHHHHHHHHHHHHcCChhhHHHHHHHHHhc----
Confidence 346678889999999999 799999999999999987753 357778999999999999999999999976
Q ss_pred cCcchHHHhHHHHHHHHHhhCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHH-hcCCHHHHHHHHhhc--ccccchH
Q 026767 122 NATNSQCKAYLSAIIVYLYANDFKQAEKCYNDCSQVDAFLRSDQNRCATKLISAY-TEGDVEEIKRVAQSS--AISNLDH 198 (233)
Q Consensus 122 ~~~~~~a~~~~~lg~~~~~~gd~~~A~~~~~~al~~~~~~~~~e~~~l~~L~~a~-~~gd~~~a~~~~~~~--~~~~ld~ 198 (233)
.+..+.+++|-|.-.+.+|++++|...|++|+..|.+. .....+.++|-+. ..|+.+.++..++++ +-...+.
T Consensus 99 --~p~~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~P~Y~--~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~ 174 (250)
T COG3063 99 --APNNGDVLNNYGAFLCAQGRPEEAMQQFERALADPAYG--EPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPP 174 (250)
T ss_pred --CCCccchhhhhhHHHHhCCChHHHHHHHHHHHhCCCCC--CcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCCh
Confidence 45566789999999999999999999999999888752 2244566777644 899999999999999 6666677
Q ss_pred HHHHHhccC
Q 026767 199 VIIKLARKL 207 (233)
Q Consensus 199 ~~~~l~~~l 207 (233)
....+++..
T Consensus 175 ~~l~~a~~~ 183 (250)
T COG3063 175 ALLELARLH 183 (250)
T ss_pred HHHHHHHHH
Confidence 777777654
No 42
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.12 E-value=1.2e-08 Score=84.82 Aligned_cols=183 Identities=13% Similarity=0.071 Sum_probs=137.1
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHH-------------------------------HHHHHHHHHHcCC-chHHHHHHH
Q 026767 6 WDAAKHMESAAALAKELHNWREVADF-------------------------------YRKASELYNECGR-SQPASDALA 53 (233)
Q Consensus 6 ~~~a~~~~~~g~~~~~~g~~~eA~~~-------------------------------~~~A~~l~~~~g~-~~~~a~~l~ 53 (233)
.+.-++...+|++|++.|..|.|+.. |++|-++|...-| +.-+-.++.
T Consensus 66 ~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRAE~~f~~L~de~efa~~Alq 145 (389)
T COG2956 66 PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRAEDIFNQLVDEGEFAEGALQ 145 (389)
T ss_pred chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhcchhhhHHHHH
Confidence 34456777899999999999998875 4455555555544 444555666
Q ss_pred HHHHHhh-hCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHccCcchHHHhHH
Q 026767 54 KAARALE-DAVPEDAIQLYTDACIMLEEDDKEQMAFDLYRAATNVYIKLEKYADAATFLLRWGLAADKCNATNSQCKAYL 132 (233)
Q Consensus 54 ~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~~~~~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~ 132 (233)
.+-.+|+ ..+.++||+.-++-..+-.+. .....+..+..++..+....+.++|+..+.+|+.. .+.-.++-.
T Consensus 146 qLl~IYQ~treW~KAId~A~~L~k~~~q~-~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa------~~~cvRAsi 218 (389)
T COG2956 146 QLLNIYQATREWEKAIDVAERLVKLGGQT-YRVEIAQFYCELAQQALASSDVDRARELLKKALQA------DKKCVRASI 218 (389)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHcCCcc-chhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhh------Cccceehhh
Confidence 6677777 577777777666555444433 34456678888888888889999999999999864 223345567
Q ss_pred HHHHHHHhhCCHHHHHHHHHHhh-cCCCCCCchHHHHHHHHHHHH-hcCCHHHHHHHHhhc--ccccchHH
Q 026767 133 SAIIVYLYANDFKQAEKCYNDCS-QVDAFLRSDQNRCATKLISAY-TEGDVEEIKRVAQSS--AISNLDHV 199 (233)
Q Consensus 133 ~lg~~~~~~gd~~~A~~~~~~al-~~~~~~~~~e~~~l~~L~~a~-~~gd~~~a~~~~~~~--~~~~ld~~ 199 (233)
.+|.+++..|+|.+|.+.++.++ +.+.+ -.+++..|..+| ..|+++.+..++.++ .+..++.+
T Consensus 219 ~lG~v~~~~g~y~~AV~~~e~v~eQn~~y----l~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~~~~ 285 (389)
T COG2956 219 ILGRVELAKGDYQKAVEALERVLEQNPEY----LSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTGADAE 285 (389)
T ss_pred hhhHHHHhccchHHHHHHHHHHHHhChHH----HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCccHH
Confidence 89999999999999999999988 55544 467999999999 799999999999999 55555554
No 43
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.11 E-value=4e-09 Score=99.84 Aligned_cols=160 Identities=16% Similarity=0.111 Sum_probs=108.6
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCChHH
Q 026767 8 AAKHMESAAALAKELHNWREVADFYRKASELYNECGRSQPASDALAKAARALE-DAVPEDAIQLYTDACIMLEEDDKEQM 86 (233)
Q Consensus 8 ~a~~~~~~g~~~~~~g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~~~~ 86 (233)
....+..+|.++...|++++|+.+|++++...... .++.+++.++. .|++++|++.++++++..+..
T Consensus 702 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~-------~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~~----- 769 (899)
T TIGR02917 702 AALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSS-------QNAIKLHRALLASGNTAEAVKTLEAWLKTHPND----- 769 (899)
T ss_pred ChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCc-------hHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC-----
Confidence 35667888999999999999999999998764211 44566777777 677777777777777654431
Q ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHccCcchHHHhHHHHHHHHHhhCCHHHHHHHHHHhhcCCCCCCchHH
Q 026767 87 AFDLYRAATNVYIKLEKYADAATFLLRWGLAADKCNATNSQCKAYLSAIIVYLYANDFKQAEKCYNDCSQVDAFLRSDQN 166 (233)
Q Consensus 87 ~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~gd~~~A~~~~~~al~~~~~~~~~e~ 166 (233)
..++..+|.++...|++++|+.+|++++... +....++.+++.++...|+ .+|+..+++++....- ..
T Consensus 770 -~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~------p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~----~~ 837 (899)
T TIGR02917 770 -AVLRTALAELYLAQKDYDKAIKHYRTVVKKA------PDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPN----IP 837 (899)
T ss_pred -HHHHHHHHHHHHHCcCHHHHHHHHHHHHHhC------CCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCC----Cc
Confidence 2466777777777777777777777777542 1234456677777777777 6677777777643211 12
Q ss_pred HHHHHHHHHH-hcCCHHHHHHHHhhc
Q 026767 167 RCATKLISAY-TEGDVEEIKRVAQSS 191 (233)
Q Consensus 167 ~~l~~L~~a~-~~gd~~~a~~~~~~~ 191 (233)
.++..++.++ ..|+++.|...++++
T Consensus 838 ~~~~~~~~~~~~~g~~~~A~~~~~~a 863 (899)
T TIGR02917 838 AILDTLGWLLVEKGEADRALPLLRKA 863 (899)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3445566665 677777777777777
No 44
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.11 E-value=1.2e-08 Score=88.34 Aligned_cols=142 Identities=19% Similarity=0.227 Sum_probs=113.5
Q ss_pred CCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh-hCCHHHHHHHHHHHH-----
Q 026767 2 LSSPWDAAKHMESAAALAKELHNWREVADFYRKASELYNECGRSQPASDALAKAARALE-DAVPEDAIQLYTDAC----- 75 (233)
Q Consensus 2 ~~~~~~~a~~~~~~g~~~~~~g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al----- 75 (233)
|++.-++.+++.|+|..+..+|+.++|+++|-+-..+.+ .-+.++..++.+|+ ..++.+||++|.++.
T Consensus 517 l~ndasc~ealfniglt~e~~~~ldeald~f~klh~il~------nn~evl~qianiye~led~aqaie~~~q~~slip~ 590 (840)
T KOG2003|consen 517 LNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAILL------NNAEVLVQIANIYELLEDPAQAIELLMQANSLIPN 590 (840)
T ss_pred HcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHH------hhHHHHHHHHHHHHHhhCHHHHHHHHHHhcccCCC
Confidence 355667888999999999999999999999998888764 46789999999999 899999999998775
Q ss_pred ---------HHHHhcCChHHHHHHH--------------HHHHHHHHHhccHHHHHHHHHHHHHHHhHccCcchHHHhHH
Q 026767 76 ---------IMLEEDDKEQMAFDLY--------------RAATNVYIKLEKYADAATFLLRWGLAADKCNATNSQCKAYL 132 (233)
Q Consensus 76 ---------~~~~~~g~~~~~~~~l--------------~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~ 132 (233)
++|.+.|+..++..|+ ..+|..|+...=+++|+.||+++.-+ .+.+.+...
T Consensus 591 dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaali------qp~~~kwql 664 (840)
T KOG2003|consen 591 DPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALI------QPNQSKWQL 664 (840)
T ss_pred CHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhc------CccHHHHHH
Confidence 4566667666665543 34566677777777888888877643 455666668
Q ss_pred HHHHHHHhhCCHHHHHHHHHHhh
Q 026767 133 SAIIVYLYANDFKQAEKCYNDCS 155 (233)
Q Consensus 133 ~lg~~~~~~gd~~~A~~~~~~al 155 (233)
.++.|+.+.|+|.+|...|....
T Consensus 665 miasc~rrsgnyqka~d~yk~~h 687 (840)
T KOG2003|consen 665 MIASCFRRSGNYQKAFDLYKDIH 687 (840)
T ss_pred HHHHHHHhcccHHHHHHHHHHHH
Confidence 89999999999999999998865
No 45
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.10 E-value=9.3e-09 Score=97.36 Aligned_cols=137 Identities=17% Similarity=0.084 Sum_probs=98.3
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--------------HHHcC---------------CchHHHHHHHHHHHH
Q 026767 8 AAKHMESAAALAKELHNWREVADFYRKASEL--------------YNECG---------------RSQPASDALAKAARA 58 (233)
Q Consensus 8 ~a~~~~~~g~~~~~~g~~~eA~~~~~~A~~l--------------~~~~g---------------~~~~~a~~l~~lg~~ 58 (233)
.+.++..+|.+|...|++++|+..+++++.. +...| +....+.++..+|.+
T Consensus 55 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (899)
T TIGR02917 55 DAEARFLLGKIYLALGDYAAAEKELRKALSLGYPKNQVLPLLARAYLLQGKFQQVLDELPGKTLLDDEGAAELLALRGLA 134 (899)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCChhhhHHHHHHHHHHCCCHHHHHHhhcccccCCchhhHHHHHHHHHH
Confidence 3456777899999999999999998888763 11222 333445566677888
Q ss_pred hh-hCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHccCcchHHHhHHHHHHH
Q 026767 59 LE-DAVPEDAIQLYTDACIMLEEDDKEQMAFDLYRAATNVYIKLEKYADAATFLLRWGLAADKCNATNSQCKAYLSAIIV 137 (233)
Q Consensus 59 ~~-~g~~~~A~~~~~~Al~~~~~~g~~~~~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~ 137 (233)
+. .|++++|+.+|+++++..+.. ..++..++.++...|++++|+..+++++... +....++..+|.+
T Consensus 135 ~~~~~~~~~A~~~~~~a~~~~~~~------~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~------~~~~~~~~~~~~~ 202 (899)
T TIGR02917 135 YLGLGQLELAQKSYEQALAIDPRS------LYAKLGLAQLALAENRFDEARALIDEVLTAD------PGNVDALLLKGDL 202 (899)
T ss_pred HHHcCCHHHHHHHHHHHHhcCCCC------hhhHHHHHHHHHHCCCHHHHHHHHHHHHHhC------CCChHHHHHHHHH
Confidence 88 789999999999888765532 2356778888888888888888888877541 1223456777778
Q ss_pred HHhhCCHHHHHHHHHHhhc
Q 026767 138 YLYANDFKQAEKCYNDCSQ 156 (233)
Q Consensus 138 ~~~~gd~~~A~~~~~~al~ 156 (233)
+...|++++|...|++++.
T Consensus 203 ~~~~g~~~~A~~~~~~a~~ 221 (899)
T TIGR02917 203 LLSLGNIELALAAYRKAIA 221 (899)
T ss_pred HHhcCCHHHHHHHHHHHHh
Confidence 8888888888888887763
No 46
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.09 E-value=1.8e-09 Score=90.42 Aligned_cols=162 Identities=19% Similarity=0.210 Sum_probs=103.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCChHHHH
Q 026767 10 KHMESAAALAKELHNWREVADFYRKASELYNECGRSQPASDALAKAARALE-DAVPEDAIQLYTDACIMLEEDDKEQMAF 88 (233)
Q Consensus 10 ~~~~~~g~~~~~~g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~~~~~~ 88 (233)
..+..+..++...++++++...++++.. ..........+...|.++. .|++++|++.|++|+++.+...
T Consensus 111 ~~l~~~l~~~~~~~~~~~~~~~l~~~~~----~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~------ 180 (280)
T PF13429_consen 111 RYLLSALQLYYRLGDYDEAEELLEKLEE----LPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALELDPDDP------ 180 (280)
T ss_dssp -------H-HHHTT-HHHHHHHHHHHHH-----T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-H------
T ss_pred chhhHHHHHHHHHhHHHHHHHHHHHHHh----ccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH------
Confidence 4455666777788888888888888663 3334466788889999999 7999999999999999988632
Q ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHccCcchHHHhHHHHHHHHHhhCCHHHHHHHHHHhhcCCCCCCchHHHH
Q 026767 89 DLYRAATNVYIKLEKYADAATFLLRWGLAADKCNATNSQCKAYLSAIIVYLYANDFKQAEKCYNDCSQVDAFLRSDQNRC 168 (233)
Q Consensus 89 ~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~gd~~~A~~~~~~al~~~~~~~~~e~~~ 168 (233)
.++..++.+++..|+++++.+.+......... + ...+..+|.++..+|++++|+..|++++... +....+
T Consensus 181 ~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~--~----~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~----p~d~~~ 250 (280)
T PF13429_consen 181 DARNALAWLLIDMGDYDEAREALKRLLKAAPD--D----PDLWDALAAAYLQLGRYEEALEYLEKALKLN----PDDPLW 250 (280)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HT--S----CCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS----TT-HHH
T ss_pred HHHHHHHHHHHHCCChHHHHHHHHHHHHHCcC--H----HHHHHHHHHHhcccccccccccccccccccc----cccccc
Confidence 46778999999999999988888776654311 1 1234678999999999999999999987432 234678
Q ss_pred HHHHHHHH-hcCCHHHHHHHHhhc
Q 026767 169 ATKLISAY-TEGDVEEIKRVAQSS 191 (233)
Q Consensus 169 l~~L~~a~-~~gd~~~a~~~~~~~ 191 (233)
+..+++++ ..|+.+.|....+++
T Consensus 251 ~~~~a~~l~~~g~~~~A~~~~~~~ 274 (280)
T PF13429_consen 251 LLAYADALEQAGRKDEALRLRRQA 274 (280)
T ss_dssp HHHHHHHHT---------------
T ss_pred cccccccccccccccccccccccc
Confidence 88999999 799999998887766
No 47
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.09 E-value=1.2e-08 Score=83.14 Aligned_cols=142 Identities=12% Similarity=-0.029 Sum_probs=112.3
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh-h--------CCHHHHHHHHHHHHHHH
Q 026767 8 AAKHMESAAALAKELHNWREVADFYRKASELYNECGRSQPASDALAKAARALE-D--------AVPEDAIQLYTDACIML 78 (233)
Q Consensus 8 ~a~~~~~~g~~~~~~g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~-~--------g~~~~A~~~~~~Al~~~ 78 (233)
...++..+|.+|...|++++|+..|++++..+.... ....++..+|.++. . |++++|++.|++++..+
T Consensus 69 ~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~---~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~ 145 (235)
T TIGR03302 69 AEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHP---DADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRY 145 (235)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCC---chHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHC
Confidence 346788899999999999999999999998875332 33456777888776 4 78999999999999988
Q ss_pred HhcCChHHHH-----------HHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHccCcchHHHhHHHHHHHHHhhCCHHHH
Q 026767 79 EEDDKEQMAF-----------DLYRAATNVYIKLEKYADAATFLLRWGLAADKCNATNSQCKAYLSAIIVYLYANDFKQA 147 (233)
Q Consensus 79 ~~~g~~~~~~-----------~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~gd~~~A 147 (233)
+.......+- .....+|.++...|++.+|+..|++++..+. +.+....+++.+|.++..+|++.+|
T Consensus 146 p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p---~~~~~~~a~~~l~~~~~~lg~~~~A 222 (235)
T TIGR03302 146 PNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAINRFETVVENYP---DTPATEEALARLVEAYLKLGLKDLA 222 (235)
T ss_pred CCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCC---CCcchHHHHHHHHHHHHHcCCHHHH
Confidence 8765322111 1124678999999999999999999997643 2344567899999999999999999
Q ss_pred HHHHHHhh
Q 026767 148 EKCYNDCS 155 (233)
Q Consensus 148 ~~~~~~al 155 (233)
..+++...
T Consensus 223 ~~~~~~l~ 230 (235)
T TIGR03302 223 QDAAAVLG 230 (235)
T ss_pred HHHHHHHH
Confidence 99888754
No 48
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.08 E-value=3.1e-09 Score=80.37 Aligned_cols=107 Identities=10% Similarity=0.068 Sum_probs=83.9
Q ss_pred HHHHHHHHHHHHcCCchHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHH
Q 026767 30 DFYRKASELYNECGRSQPASDALAKAARALE-DAVPEDAIQLYTDACIMLEEDDKEQMAFDLYRAATNVYIKLEKYADAA 108 (233)
Q Consensus 30 ~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~~~~~~~~l~~lg~~~~~~g~~~~A~ 108 (233)
.++++|+.+--. .+.+.|.++. .|++++|+.+|++++.+-+.. ..++.++|.++..+|++++|+
T Consensus 14 ~~~~~al~~~p~---------~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~------~~a~~~lg~~~~~~g~~~~A~ 78 (144)
T PRK15359 14 DILKQLLSVDPE---------TVYASGYASWQEGDYSRAVIDFSWLVMAQPWS------WRAHIALAGTWMMLKEYTTAI 78 (144)
T ss_pred HHHHHHHHcCHH---------HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc------HHHHHHHHHHHHHHhhHHHHH
Confidence 566777666422 1445677877 799999999999988775532 357889999999999999999
Q ss_pred HHHHHHHHHHhHccCcchHHHhHHHHHHHHHhhCCHHHHHHHHHHhhcC
Q 026767 109 TFLLRWGLAADKCNATNSQCKAYLSAIIVYLYANDFKQAEKCYNDCSQV 157 (233)
Q Consensus 109 ~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~gd~~~A~~~~~~al~~ 157 (233)
..|++++.+ .+..+.+++++|.++..+|++.+|+..|++++.+
T Consensus 79 ~~y~~Al~l------~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~ 121 (144)
T PRK15359 79 NFYGHALML------DASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKM 121 (144)
T ss_pred HHHHHHHhc------CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 999999865 3344567899999999999999999999999854
No 49
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.06 E-value=9.4e-09 Score=90.77 Aligned_cols=101 Identities=14% Similarity=0.151 Sum_probs=57.5
Q ss_pred HHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCChHH-HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHccCcchHHH
Q 026767 52 LAKAARALE-DAVPEDAIQLYTDACIMLEEDDKEQM-AFDLYRAATNVYIKLEKYADAATFLLRWGLAADKCNATNSQCK 129 (233)
Q Consensus 52 l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~~~~-~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~ 129 (233)
++.+|.+.. .+.+.+|+.+|+.+++..+..+.... -.-+++|||.++.++++|++|+.+|++++.+. +.-+.
T Consensus 417 ~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~------~k~~~ 490 (611)
T KOG1173|consen 417 LHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLS------PKDAS 490 (611)
T ss_pred hhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcC------CCchh
Confidence 444455555 45666666666666655555543321 23445666666666666666666666666542 12244
Q ss_pred hHHHHHHHHHhhCCHHHHHHHHHHhhcCC
Q 026767 130 AYLSAIIVYLYANDFKQAEKCYNDCSQVD 158 (233)
Q Consensus 130 ~~~~lg~~~~~~gd~~~A~~~~~~al~~~ 158 (233)
++.++|.+|..+|+++.|.++|.+++.+.
T Consensus 491 ~~asig~iy~llgnld~Aid~fhKaL~l~ 519 (611)
T KOG1173|consen 491 THASIGYIYHLLGNLDKAIDHFHKALALK 519 (611)
T ss_pred HHHHHHHHHHHhcChHHHHHHHHHHHhcC
Confidence 55666666666666666666666666444
No 50
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.06 E-value=2.2e-09 Score=81.25 Aligned_cols=111 Identities=6% Similarity=-0.158 Sum_probs=84.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCChHHHHH
Q 026767 11 HMESAAALAKELHNWREVADFYRKASELYNECGRSQPASDALAKAARALE-DAVPEDAIQLYTDACIMLEEDDKEQMAFD 89 (233)
Q Consensus 11 ~~~~~g~~~~~~g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~~~~~~~ 89 (233)
.+.+.|.++...|++++|+.+|++++.+- + .-..++.++|.++. .|++++|+.+|.+|+++.+.. ..
T Consensus 26 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~-----P-~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~------~~ 93 (144)
T PRK15359 26 TVYASGYASWQEGDYSRAVIDFSWLVMAQ-----P-WSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASH------PE 93 (144)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcC-----C-CcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCC------cH
Confidence 37778888889999999999999987662 2 35677888999888 799999999999999875543 25
Q ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHhHccCcchHHHhHHHHHHHHH
Q 026767 90 LYRAATNVYIKLEKYADAATFLLRWGLAADKCNATNSQCKAYLSAIIVYL 139 (233)
Q Consensus 90 ~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~ 139 (233)
.+.++|.++..+|++++|+..|++++.+. +.....+.+.+.+..
T Consensus 94 a~~~lg~~l~~~g~~~eAi~~~~~Al~~~------p~~~~~~~~~~~~~~ 137 (144)
T PRK15359 94 PVYQTGVCLKMMGEPGLAREAFQTAIKMS------YADASWSEIRQNAQI 137 (144)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC------CCChHHHHHHHHHHH
Confidence 78889999999999999999999988752 222334455555543
No 51
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.04 E-value=1.3e-09 Score=90.87 Aligned_cols=161 Identities=15% Similarity=0.194 Sum_probs=116.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCChHHHHHH
Q 026767 12 MESAAALAKELHNWREVADFYRKASELYNECGRSQPASDALAKAARALE-DAVPEDAIQLYTDACIMLEEDDKEQMAFDL 90 (233)
Q Consensus 12 ~~~~g~~~~~~g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~~~~~~~~ 90 (233)
+..++.++..+++.++|+++|..++++.- .-..+...+|.-|. .++++-|+.+|++.+.+-...+ +.
T Consensus 293 l~g~ARi~eam~~~~~a~~lYk~vlk~~~------~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~sp------eL 360 (478)
T KOG1129|consen 293 LLGQARIHEAMEQQEDALQLYKLVLKLHP------INVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSP------EL 360 (478)
T ss_pred hhhhHHHHHHHHhHHHHHHHHHHHHhcCC------ccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCCh------HH
Confidence 33444444445555555555555444321 11112223444555 6888888888888887755443 68
Q ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHHhHccCcchHHHhHHHHHHHHHhhCCHHHHHHHHHHhhcCCCCCCchHHHHHH
Q 026767 91 YRAATNVYIKLEKYADAATFLLRWGLAADKCNATNSQCKAYLSAIIVYLYANDFKQAEKCYNDCSQVDAFLRSDQNRCAT 170 (233)
Q Consensus 91 l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~gd~~~A~~~~~~al~~~~~~~~~e~~~l~ 170 (233)
+.|||.++..-++++-++..|++++..... +...+.+++|||.|....||+.-|.++|+-++... ...++.++
T Consensus 361 f~NigLCC~yaqQ~D~~L~sf~RAlstat~---~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d----~~h~ealn 433 (478)
T KOG1129|consen 361 FCNIGLCCLYAQQIDLVLPSFQRALSTATQ---PGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD----AQHGEALN 433 (478)
T ss_pred HhhHHHHHHhhcchhhhHHHHHHHHhhccC---cchhhhhhhccceeEEeccchHHHHHHHHHHhccC----cchHHHHH
Confidence 999999999999999999999999987653 34457789999999999999999999999988322 23477889
Q ss_pred HHHHHH-hcCCHHHHHHHHhhc
Q 026767 171 KLISAY-TEGDVEEIKRVAQSS 191 (233)
Q Consensus 171 ~L~~a~-~~gd~~~a~~~~~~~ 191 (233)
+|+-.- +.||.+.|+..++.+
T Consensus 434 NLavL~~r~G~i~~Arsll~~A 455 (478)
T KOG1129|consen 434 NLAVLAARSGDILGARSLLNAA 455 (478)
T ss_pred hHHHHHhhcCchHHHHHHHHHh
Confidence 998744 899999999999887
No 52
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.03 E-value=4.7e-09 Score=92.61 Aligned_cols=179 Identities=11% Similarity=0.039 Sum_probs=147.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCChHHH
Q 026767 9 AKHMESAAALAKELHNWREVADFYRKASELYNECGRSQPASDALAKAARALE-DAVPEDAIQLYTDACIMLEEDDKEQMA 87 (233)
Q Consensus 9 a~~~~~~g~~~~~~g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~~~~~ 87 (233)
+.+|...|.+|.-.+..++|+.+|..|.+++...--|. .=+|.-|. .+.+.-|-++|.+|+.+++...
T Consensus 346 gpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~------LYlgmey~~t~n~kLAe~Ff~~A~ai~P~Dp----- 414 (611)
T KOG1173|consen 346 GPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPS------LYLGMEYMRTNNLKLAEKFFKQALAIAPSDP----- 414 (611)
T ss_pred cHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchH------HHHHHHHHHhccHHHHHHHHHHHHhcCCCcc-----
Confidence 46788899999999999999999999999997666653 44788888 6999999999999999999754
Q ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHccCcch-HHHhHHHHHHHHHhhCCHHHHHHHHHHhhcC-CCCCCchH
Q 026767 88 FDLYRAATNVYIKLEKYADAATFLLRWGLAADKCNATNS-QCKAYLSAIIVYLYANDFKQAEKCYNDCSQV-DAFLRSDQ 165 (233)
Q Consensus 88 ~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~-~a~~~~~lg~~~~~~gd~~~A~~~~~~al~~-~~~~~~~e 165 (233)
-+++.+|.+....+.|.+|..+|+.++........... ....+.+||.++.+.+.+.+|+.+|++++.. +.+
T Consensus 415 -lv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~----- 488 (611)
T KOG1173|consen 415 -LVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKD----- 488 (611)
T ss_pred -hhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCc-----
Confidence 58899999999999999999999999988877665543 3456799999999999999999999999844 323
Q ss_pred HHHHHHHHHHH-hcCCHHHHHHHHhhc-ccccchHHHHHHh
Q 026767 166 NRCATKLISAY-TEGDVEEIKRVAQSS-AISNLDHVIIKLA 204 (233)
Q Consensus 166 ~~~l~~L~~a~-~~gd~~~a~~~~~~~-~~~~ld~~~~~l~ 204 (233)
......+|-.| -.|+.+.|.+++..+ .+++-+.-...|.
T Consensus 489 ~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL 529 (611)
T KOG1173|consen 489 ASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELL 529 (611)
T ss_pred hhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHH
Confidence 45566777777 689999999999999 4555443333333
No 53
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.03 E-value=1.1e-08 Score=95.28 Aligned_cols=137 Identities=9% Similarity=-0.054 Sum_probs=105.6
Q ss_pred ChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcC
Q 026767 4 SPWDAAKHMESAAALAKELHNWREVADFYRKASELYNECGRSQPASDALAKAARALE-DAVPEDAIQLYTDACIMLEEDD 82 (233)
Q Consensus 4 ~~~~~a~~~~~~g~~~~~~g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g 82 (233)
++..-+.++.++|.+....|++++|..+++.++++. | .-..+..+.+.++. .+++++|+..+++++..-+..
T Consensus 81 ~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~-----P-d~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~- 153 (694)
T PRK15179 81 RYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRF-----P-DSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSS- 153 (694)
T ss_pred hccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC-----C-CcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCC-
Confidence 344557788888888888888888888888888875 3 45566777788877 788888888888888776643
Q ss_pred ChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHccCcchHHHhHHHHHHHHHhhCCHHHHHHHHHHhhcCC
Q 026767 83 KEQMAFDLYRAATNVYIKLEKYADAATFLLRWGLAADKCNATNSQCKAYLSAIIVYLYANDFKQAEKCYNDCSQVD 158 (233)
Q Consensus 83 ~~~~~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~gd~~~A~~~~~~al~~~ 158 (233)
+..+..+|.++.++|+|++|+++|++++. ..+....++.+.|.++..+|+.++|...|++++...
T Consensus 154 -----~~~~~~~a~~l~~~g~~~~A~~~y~~~~~------~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~ 218 (694)
T PRK15179 154 -----AREILLEAKSWDEIGQSEQADACFERLSR------QHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAI 218 (694)
T ss_pred -----HHHHHHHHHHHHHhcchHHHHHHHHHHHh------cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence 35778888888888888888888888885 123445678888888888888888888888887544
No 54
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.03 E-value=1.9e-08 Score=85.02 Aligned_cols=151 Identities=11% Similarity=-0.045 Sum_probs=115.3
Q ss_pred CCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHh
Q 026767 23 HNWREVADFYRKASELYNECGRSQPASDALAKAARALE-DAVPEDAIQLYTDACIMLEEDDKEQMAFDLYRAATNVYIKL 101 (233)
Q Consensus 23 g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~~~~~~~~l~~lg~~~~~~ 101 (233)
+..+.++..+.+.+... .-++...+..+.+.|.++. .|++++|+..|++|+++.+.. ..+++++|.++...
T Consensus 40 ~~~e~~i~~~~~~l~~~--~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~------~~a~~~lg~~~~~~ 111 (296)
T PRK11189 40 LQQEVILARLNQILASR--DLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDM------ADAYNYLGIYLTQA 111 (296)
T ss_pred hHHHHHHHHHHHHHccc--cCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCC------HHHHHHHHHHHHHC
Confidence 44567777777766432 2445677889999999999 799999999999999986642 36899999999999
Q ss_pred ccHHHHHHHHHHHHHHHhHccCcchHHHhHHHHHHHHHhhCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHHhcCCH
Q 026767 102 EKYADAATFLLRWGLAADKCNATNSQCKAYLSAIIVYLYANDFKQAEKCYNDCSQVDAFLRSDQNRCATKLISAYTEGDV 181 (233)
Q Consensus 102 g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~gd~~~A~~~~~~al~~~~~~~~~e~~~l~~L~~a~~~gd~ 181 (233)
|++++|+..|++++++ .+....++.++|.++...|++++|.+.|++++.....+. .......+ ....++.
T Consensus 112 g~~~~A~~~~~~Al~l------~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~--~~~~~~~l--~~~~~~~ 181 (296)
T PRK11189 112 GNFDAAYEAFDSVLEL------DPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDP--YRALWLYL--AESKLDP 181 (296)
T ss_pred CCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH--HHHHHHHH--HHccCCH
Confidence 9999999999999976 233456789999999999999999999999985432211 11111111 1246788
Q ss_pred HHHHHHHhhc
Q 026767 182 EEIKRVAQSS 191 (233)
Q Consensus 182 ~~a~~~~~~~ 191 (233)
++|...+++.
T Consensus 182 ~~A~~~l~~~ 191 (296)
T PRK11189 182 KQAKENLKQR 191 (296)
T ss_pred HHHHHHHHHH
Confidence 8888888665
No 55
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=99.02 E-value=7.3e-08 Score=72.84 Aligned_cols=135 Identities=14% Similarity=0.060 Sum_probs=98.6
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCChH
Q 026767 7 DAAKHMESAAALAKELHNWREVADFYRKASELYNECGRSQPASDALAKAARALE-DAVPEDAIQLYTDACIMLEEDDKEQ 85 (233)
Q Consensus 7 ~~a~~~~~~g~~~~~~g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~~~ 85 (233)
.++..|..+-..+. .+++..+...+++-.. ..++..-+..+...+|.++. .|++++|+..|++++.-. .+..
T Consensus 10 ~a~~~y~~~~~~~~-~~~~~~~~~~~~~l~~---~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~---~d~~ 82 (145)
T PF09976_consen 10 QASALYEQALQALQ-AGDPAKAEAAAEQLAK---DYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANA---PDPE 82 (145)
T ss_pred HHHHHHHHHHHHHH-CCCHHHHHHHHHHHHH---HCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC---CCHH
Confidence 34555666655554 7788877665544433 34555566777888888888 799999999999988844 3334
Q ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHccCcchHHHhHHHHHHHHHhhCCHHHHHHHHHHhh
Q 026767 86 MAFDLYRAATNVYIKLEKYADAATFLLRWGLAADKCNATNSQCKAYLSAIIVYLYANDFKQAEKCYNDCS 155 (233)
Q Consensus 86 ~~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~gd~~~A~~~~~~al 155 (233)
....+..+++.+++..|+|++|+..++.. ......+.++...|.++...|++++|+..|++++
T Consensus 83 l~~~a~l~LA~~~~~~~~~d~Al~~L~~~-------~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 83 LKPLARLRLARILLQQGQYDEALATLQQI-------PDEAFKALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHhc-------cCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 44557788999999999999999988652 2334455677889999999999999999998874
No 56
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.01 E-value=2.9e-08 Score=79.10 Aligned_cols=97 Identities=14% Similarity=0.131 Sum_probs=70.2
Q ss_pred HHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHH-HHhcc--HHHHHHHHHHHHHHHhHccCc
Q 026767 49 SDALAKAARALE-DAVPEDAIQLYTDACIMLEEDDKEQMAFDLYRAATNVY-IKLEK--YADAATFLLRWGLAADKCNAT 124 (233)
Q Consensus 49 a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~~~~~~~~l~~lg~~~-~~~g~--~~~A~~~~~~al~~~~~~~~~ 124 (233)
+..|..+|.+|. .|++++|+..|++|+.+.... ..++.++|.++ ...|+ +++|...+++++.. .
T Consensus 73 ~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~------~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~------d 140 (198)
T PRK10370 73 SEQWALLGEYYLWRNDYDNALLAYRQALQLRGEN------AELYAALATVLYYQAGQHMTPQTREMIDKALAL------D 140 (198)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHh------C
Confidence 456777788887 688888888888888777643 24667777764 56666 47888888888764 2
Q ss_pred chHHHhHHHHHHHHHhhCCHHHHHHHHHHhhcC
Q 026767 125 NSQCKAYLSAIIVYLYANDFKQAEKCYNDCSQV 157 (233)
Q Consensus 125 ~~~a~~~~~lg~~~~~~gd~~~A~~~~~~al~~ 157 (233)
+....+++.+|.++...|++++|+.+|++++..
T Consensus 141 P~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l 173 (198)
T PRK10370 141 ANEVTALMLLASDAFMQADYAQAIELWQKVLDL 173 (198)
T ss_pred CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 334456788888888888888888888888744
No 57
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.96 E-value=3.5e-08 Score=76.74 Aligned_cols=107 Identities=13% Similarity=0.072 Sum_probs=80.1
Q ss_pred ChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcC
Q 026767 4 SPWDAAKHMESAAALAKELHNWREVADFYRKASELYNECGRSQPASDALAKAARALE-DAVPEDAIQLYTDACIMLEEDD 82 (233)
Q Consensus 4 ~~~~~a~~~~~~g~~~~~~g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g 82 (233)
.....+..+.+.|..+...|++++|+.+|++++.+... +...+.++.++|.++. .|++++|+.+|++++.+.+..
T Consensus 30 ~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~---~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~- 105 (172)
T PRK02603 30 KKAKEAFVYYRDGMSAQADGEYAEALENYEEALKLEED---PNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQ- 105 (172)
T ss_pred cHhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhc---cchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccc-
Confidence 45567788999999999999999999999999987543 2235678999999999 799999999999999986543
Q ss_pred ChHHHHHHHHHHHHHHHHhcc-------HHHHHHHHHHHHHHHh
Q 026767 83 KEQMAFDLYRAATNVYIKLEK-------YADAATFLLRWGLAAD 119 (233)
Q Consensus 83 ~~~~~~~~l~~lg~~~~~~g~-------~~~A~~~~~~al~~~~ 119 (233)
...+..+|.++...|+ +++|+..|++++..++
T Consensus 106 -----~~~~~~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~ 144 (172)
T PRK02603 106 -----PSALNNIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWK 144 (172)
T ss_pred -----HHHHHHHHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHH
Confidence 2345566777766555 5555555555554443
No 58
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.94 E-value=7.4e-08 Score=89.80 Aligned_cols=154 Identities=10% Similarity=0.070 Sum_probs=123.4
Q ss_pred HHHHcCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 026767 18 LAKELHNWREVADFYRKASELYNECGRSQPASDALAKAARALE-DAVPEDAIQLYTDACIMLEEDDKEQMAFDLYRAATN 96 (233)
Q Consensus 18 ~~~~~g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~~~~~~~~l~~lg~ 96 (233)
+....+....+.+..-+++.+.+ ++..-+.++.++|.+.. .|++++|..+++.++++.++. ..+..+++.
T Consensus 58 ~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~------~~a~~~~a~ 128 (694)
T PRK15179 58 VLERHAAVHKPAAALPELLDYVR---RYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDS------SEAFILMLR 128 (694)
T ss_pred HHHHhhhhcchHhhHHHHHHHHH---hccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCc------HHHHHHHHH
Confidence 33334444444444444444443 23344778999999999 799999999999999999863 358899999
Q ss_pred HHHHhccHHHHHHHHHHHHHHHhHccCcchHHHhHHHHHHHHHhhCCHHHHHHHHHHhhc-CCCCCCchHHHHHHHHHHH
Q 026767 97 VYIKLEKYADAATFLLRWGLAADKCNATNSQCKAYLSAIIVYLYANDFKQAEKCYNDCSQ-VDAFLRSDQNRCATKLISA 175 (233)
Q Consensus 97 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~gd~~~A~~~~~~al~-~~~~~~~~e~~~l~~L~~a 175 (233)
++.+.+++++|+..+++++.. .+..+.+++.+|.+..+.|+|++|...|++++. .+ ....++..++.+
T Consensus 129 ~L~~~~~~eeA~~~~~~~l~~------~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p-----~~~~~~~~~a~~ 197 (694)
T PRK15179 129 GVKRQQGIEAGRAEIELYFSG------GSSSAREILLEAKSWDEIGQSEQADACFERLSRQHP-----EFENGYVGWAQS 197 (694)
T ss_pred HHHHhccHHHHHHHHHHHhhc------CCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCC-----CcHHHHHHHHHH
Confidence 999999999999999999964 445567889999999999999999999999984 33 346788899998
Q ss_pred H-hcCCHHHHHHHHhhc
Q 026767 176 Y-TEGDVEEIKRVAQSS 191 (233)
Q Consensus 176 ~-~~gd~~~a~~~~~~~ 191 (233)
+ ..|+.++|..+++.+
T Consensus 198 l~~~G~~~~A~~~~~~a 214 (694)
T PRK15179 198 LTRRGALWRARDVLQAG 214 (694)
T ss_pred HHHcCCHHHHHHHHHHH
Confidence 8 799999999999988
No 59
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=98.90 E-value=4.6e-08 Score=75.73 Aligned_cols=110 Identities=8% Similarity=-0.044 Sum_probs=82.5
Q ss_pred CCchHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHc
Q 026767 43 GRSQPASDALAKAARALE-DAVPEDAIQLYTDACIMLEEDDKEQMAFDLYRAATNVYIKLEKYADAATFLLRWGLAADKC 121 (233)
Q Consensus 43 g~~~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~~~~~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~ 121 (233)
......+.++.++|.++. .|++++|+.+|++|+.+... ....+.++.++|.++...|++++|+.+|++++.+....
T Consensus 29 ~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~---~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~ 105 (168)
T CHL00033 29 TSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEID---PYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFL 105 (168)
T ss_pred CchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcccc---chhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc
Confidence 344568899999999999 79999999999999998643 22234589999999999999999999999999763222
Q ss_pred cC-cchHHHhHHHHHHHHHhhCCHHHHHHHHHHhh
Q 026767 122 NA-TNSQCKAYLSAIIVYLYANDFKQAEKCYNDCS 155 (233)
Q Consensus 122 ~~-~~~~a~~~~~lg~~~~~~gd~~~A~~~~~~al 155 (233)
.. ....+.++..+|..+..+|++..|+..+.+++
T Consensus 106 ~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~ 140 (168)
T CHL00033 106 PQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAA 140 (168)
T ss_pred HHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHH
Confidence 11 11223344444444448899998888887775
No 60
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.90 E-value=6.4e-08 Score=83.96 Aligned_cols=173 Identities=16% Similarity=0.132 Sum_probs=114.2
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCChHHHHHHH
Q 026767 13 ESAAALAKELHNWREVADFYRKASELYNECGRSQPASDALAKAARALE-DAVPEDAIQLYTDACIMLEEDDKEQMAFDLY 91 (233)
Q Consensus 13 ~~~g~~~~~~g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~~~~~~~~l 91 (233)
.|-|++-...|++++|.+.|.+|+. +-.....++.|+|..++ .|+.++|+.+|.+-..+... -+.++
T Consensus 494 ~nkgn~~f~ngd~dka~~~ykeal~------ndasc~ealfniglt~e~~~~ldeald~f~klh~il~n------n~evl 561 (840)
T KOG2003|consen 494 TNKGNIAFANGDLDKAAEFYKEALN------NDASCTEALFNIGLTAEALGNLDEALDCFLKLHAILLN------NAEVL 561 (840)
T ss_pred hcCCceeeecCcHHHHHHHHHHHHc------CchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHh------hHHHH
Confidence 3334444456777777777777753 33456778889999999 79999999999888887774 35788
Q ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHHhHccCcchHHHhHHHHHHHHHhhCCHHHHHHHHHHhhcCCCCCCchHHHHHHH
Q 026767 92 RAATNVYIKLEKYADAATFLLRWGLAADKCNATNSQCKAYLSAIIVYLYANDFKQAEKCYNDCSQVDAFLRSDQNRCATK 171 (233)
Q Consensus 92 ~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~gd~~~A~~~~~~al~~~~~~~~~e~~~l~~ 171 (233)
..++.+|-.+.+..+|+++|-++..+. +.-..++..++.+|-+.||-.+|..++-.+...+- -.-++.++
T Consensus 562 ~qianiye~led~aqaie~~~q~~sli------p~dp~ilskl~dlydqegdksqafq~~ydsyryfp----~nie~iew 631 (840)
T KOG2003|consen 562 VQIANIYELLEDPAQAIELLMQANSLI------PNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFP----CNIETIEW 631 (840)
T ss_pred HHHHHHHHHhhCHHHHHHHHHHhcccC------CCCHHHHHHHHHHhhcccchhhhhhhhhhcccccC----cchHHHHH
Confidence 889999999999999999988887542 22234667788888888888888777665432210 11234555
Q ss_pred HHHHH-hcCCHHHHHHHHhhc-ccccc-hHHHHHHhccC
Q 026767 172 LISAY-TEGDVEEIKRVAQSS-AISNL-DHVIIKLARKL 207 (233)
Q Consensus 172 L~~a~-~~gd~~~a~~~~~~~-~~~~l-d~~~~~l~~~l 207 (233)
|+..| +..=.+++..+++++ ++..- ..|...++..+
T Consensus 632 l~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~ 670 (840)
T KOG2003|consen 632 LAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCF 670 (840)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHH
Confidence 55555 444455555555555 33332 22555555443
No 61
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.87 E-value=1.8e-07 Score=70.97 Aligned_cols=110 Identities=15% Similarity=0.037 Sum_probs=87.6
Q ss_pred HHHHHcCCc-hHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Q 026767 37 ELYNECGRS-QPASDALAKAARALE-DAVPEDAIQLYTDACIMLEEDDKEQMAFDLYRAATNVYIKLEKYADAATFLLRW 114 (233)
Q Consensus 37 ~l~~~~g~~-~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~~~~~~~~l~~lg~~~~~~g~~~~A~~~~~~a 114 (233)
.+..-.+-. ...-..+..+|..+. .|++++|...|+-.+.+-... ..-+.++|.++..+|+|.+|++.|.++
T Consensus 22 sl~~l~~~~~~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~------~~y~~gLG~~~Q~~g~~~~AI~aY~~A 95 (157)
T PRK15363 22 SLRMLLDDDVTQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWS------FDYWFRLGECCQAQKHWGEAIYAYGRA 95 (157)
T ss_pred cHHHHHCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc------HHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 333333433 445556667777777 799999999999888776542 357889999999999999999999999
Q ss_pred HHHHhHccCcchHHHhHHHHHHHHHhhCCHHHHHHHHHHhhcCC
Q 026767 115 GLAADKCNATNSQCKAYLSAIIVYLYANDFKQAEKCYNDCSQVD 158 (233)
Q Consensus 115 l~~~~~~~~~~~~a~~~~~lg~~~~~~gd~~~A~~~~~~al~~~ 158 (233)
+.+- +.-...++++|.|++..|+.+.|++.|+.++...
T Consensus 96 ~~L~------~ddp~~~~~ag~c~L~lG~~~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 96 AQIK------IDAPQAPWAAAECYLACDNVCYAIKALKAVVRIC 133 (157)
T ss_pred HhcC------CCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 9762 3445678999999999999999999999998555
No 62
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.84 E-value=2.1e-07 Score=80.09 Aligned_cols=175 Identities=13% Similarity=-0.047 Sum_probs=108.6
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhc-----
Q 026767 8 AAKHMESAAALAKELHNWREVADFYRKASELYNECGRSQPASDALAKAARALE-DAVPEDAIQLYTDACIMLEED----- 81 (233)
Q Consensus 8 ~a~~~~~~g~~~~~~g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~----- 81 (233)
.+.++..+|.++...|+++++...+.++.......-+. .......+.++. .|++++|+..++++++..+..
T Consensus 5 ~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~ 81 (355)
T cd05804 5 FALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATE---RERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALK 81 (355)
T ss_pred cHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCH---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHH
Confidence 34556666666666666666666666666555433322 112223344444 566666666666655442211
Q ss_pred --------------------------CChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHccCcchHHHhHHHHH
Q 026767 82 --------------------------DKEQMAFDLYRAATNVYIKLEKYADAATFLLRWGLAADKCNATNSQCKAYLSAI 135 (233)
Q Consensus 82 --------------------------g~~~~~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg 135 (233)
+........+..+|.++...|++++|+..+++++.+.. ....++..+|
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p------~~~~~~~~la 155 (355)
T cd05804 82 LHLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNP------DDAWAVHAVA 155 (355)
T ss_pred HhHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC------CCcHHHHHHH
Confidence 11111123556778888899999999999999987632 2245678889
Q ss_pred HHHHhhCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHH-hcCCHHHHHHHHhhc
Q 026767 136 IVYLYANDFKQAEKCYNDCSQVDAFLRSDQNRCATKLISAY-TEGDVEEIKRVAQSS 191 (233)
Q Consensus 136 ~~~~~~gd~~~A~~~~~~al~~~~~~~~~e~~~l~~L~~a~-~~gd~~~a~~~~~~~ 191 (233)
.++...|++++|+.++++++................++..+ ..|+.++|...+++.
T Consensus 156 ~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~ 212 (355)
T cd05804 156 HVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTH 212 (355)
T ss_pred HHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 99999999999999999987443221122223344566666 789999999888886
No 63
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.82 E-value=1.5e-07 Score=74.93 Aligned_cols=126 Identities=13% Similarity=0.107 Sum_probs=99.2
Q ss_pred hCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHccCcchHHHhHHHHHHHH-H
Q 026767 61 DAVPEDAIQLYTDACIMLEEDDKEQMAFDLYRAATNVYIKLEKYADAATFLLRWGLAADKCNATNSQCKAYLSAIIVY-L 139 (233)
Q Consensus 61 ~g~~~~A~~~~~~Al~~~~~~g~~~~~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~-~ 139 (233)
.++.++++..+++++...+.. ...+..+|.+|...|++++|+..|++++.+. +.....+..+|.++ .
T Consensus 52 ~~~~~~~i~~l~~~L~~~P~~------~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~------P~~~~~~~~lA~aL~~ 119 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANPQN------SEQWALLGEYYLWRNDYDNALLAYRQALQLR------GENAELYAALATVLYY 119 (198)
T ss_pred chhHHHHHHHHHHHHHHCCCC------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC------CCCHHHHHHHHHHHHH
Confidence 477889999999999887654 2578899999999999999999999999762 34456788999875 6
Q ss_pred hhCC--HHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHH-hcCCHHHHHHHHhhc-ccccchHHHHH
Q 026767 140 YAND--FKQAEKCYNDCSQVDAFLRSDQNRCATKLISAY-TEGDVEEIKRVAQSS-AISNLDHVIIK 202 (233)
Q Consensus 140 ~~gd--~~~A~~~~~~al~~~~~~~~~e~~~l~~L~~a~-~~gd~~~a~~~~~~~-~~~~ld~~~~~ 202 (233)
..|+ +.+|...+++++.... .+..++..|+..+ +.||+++|..+|++. -...-+..+..
T Consensus 120 ~~g~~~~~~A~~~l~~al~~dP----~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~~~r~~ 182 (198)
T PRK10370 120 QAGQHMTPQTREMIDKALALDA----NEVTALMLLASDAFMQADYAQAIELWQKVLDLNSPRVNRTQ 182 (198)
T ss_pred hcCCCCcHHHHHHHHHHHHhCC----CChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHHH
Confidence 7787 5999999999984431 2356788888877 899999999999999 34443444333
No 64
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.81 E-value=3.9e-07 Score=70.85 Aligned_cols=98 Identities=10% Similarity=0.069 Sum_probs=77.3
Q ss_pred HcCCchHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHh
Q 026767 41 ECGRSQPASDALAKAARALE-DAVPEDAIQLYTDACIMLEEDDKEQMAFDLYRAATNVYIKLEKYADAATFLLRWGLAAD 119 (233)
Q Consensus 41 ~~g~~~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~~~~~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~ 119 (233)
........+.++.+.|.++. .|++++|+.+|++++.+.+.... ...++.++|.++...|++++|+.+|++++.+..
T Consensus 27 ~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~---~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 103 (172)
T PRK02603 27 PINKKAKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPND---RSYILYNMGIIYASNGEHDKALEYYHQALELNP 103 (172)
T ss_pred ccccHhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccch---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc
Confidence 34445678889999999999 79999999999999998765332 245899999999999999999999999997632
Q ss_pred HccCcchHHHhHHHHHHHHHhhCCHHHH
Q 026767 120 KCNATNSQCKAYLSAIIVYLYANDFKQA 147 (233)
Q Consensus 120 ~~~~~~~~a~~~~~lg~~~~~~gd~~~A 147 (233)
.....+..+|.++...|+...+
T Consensus 104 ------~~~~~~~~lg~~~~~~g~~~~a 125 (172)
T PRK02603 104 ------KQPSALNNIAVIYHKRGEKAEE 125 (172)
T ss_pred ------ccHHHHHHHHHHHHHcCChHhH
Confidence 2345567778888777664333
No 65
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=98.80 E-value=4.4e-07 Score=86.24 Aligned_cols=179 Identities=8% Similarity=-0.077 Sum_probs=117.6
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhc--------CChH
Q 026767 15 AAALAKELHNWREVADFYRKASELYNECGRSQPASDALAKAARALE-DAVPEDAIQLYTDACIMLEED--------DKEQ 85 (233)
Q Consensus 15 ~g~~~~~~g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~--------g~~~ 85 (233)
+|.+|...|++++|+.+|++++..- ..+.........+++.++. .|++++|+.+++++....+.. ..+.
T Consensus 278 la~~yl~~g~~e~A~~~l~~~l~~~--p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~ 355 (765)
T PRK10049 278 VASAYLKLHQPEKAQSILTELFYHP--ETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPN 355 (765)
T ss_pred HHHHHHhcCCcHHHHHHHHHHhhcC--CCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCC
Confidence 4666667777777777777765421 1111111233455555666 688899988888888765321 1111
Q ss_pred -HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHccCcchHHHhHHHHHHHHHhhCCHHHHHHHHHHhhcC-CCCCCc
Q 026767 86 -MAFDLYRAATNVYIKLEKYADAATFLLRWGLAADKCNATNSQCKAYLSAIIVYLYANDFKQAEKCYNDCSQV-DAFLRS 163 (233)
Q Consensus 86 -~~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~gd~~~A~~~~~~al~~-~~~~~~ 163 (233)
....++..++.++...|++++|++.+++++.. .+.....+..++.++...|++.+|++.+++++.+ |..
T Consensus 356 ~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~------~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~--- 426 (765)
T PRK10049 356 DDWLQGQSLLSQVAKYSNDLPQAEMRARELAYN------APGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRN--- 426 (765)
T ss_pred chHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCC---
Confidence 12246678889999999999999999998865 2333567899999999999999999999999854 322
Q ss_pred hHHHHHHHHHHHH-hcCCHHHHHHHHhhcccccchH-HHHHHhcc
Q 026767 164 DQNRCATKLISAY-TEGDVEEIKRVAQSSAISNLDH-VIIKLARK 206 (233)
Q Consensus 164 ~e~~~l~~L~~a~-~~gd~~~a~~~~~~~~~~~ld~-~~~~l~~~ 206 (233)
..+...++... ..|++++|...+++.+-...+. .+.++.+.
T Consensus 427 --~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~~~~~~~~~~ 469 (765)
T PRK10049 427 --INLEVEQAWTALDLQEWRQMDVLTDDVVAREPQDPGVQRLARA 469 (765)
T ss_pred --hHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 22444444444 7899999999998884444433 44444443
No 66
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=98.79 E-value=1.3e-06 Score=81.61 Aligned_cols=186 Identities=13% Similarity=0.134 Sum_probs=124.9
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH---------------HHHcCCchHHH-----------------------
Q 026767 8 AAKHMESAAALAKELHNWREVADFYRKASEL---------------YNECGRSQPAS----------------------- 49 (233)
Q Consensus 8 ~a~~~~~~g~~~~~~g~~~eA~~~~~~A~~l---------------~~~~g~~~~~a----------------------- 49 (233)
.+.+|.++|.+|..+|+|++|..||.+|+.. |...|+...+.
T Consensus 306 ~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~L 385 (1018)
T KOG2002|consen 306 KAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCL 385 (1018)
T ss_pred HHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhH
Confidence 4677899999999999999999999999873 11122222111
Q ss_pred -----------------------------HHHHHHHHHhhhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHH
Q 026767 50 -----------------------------DALAKAARALEDAVPEDAIQLYTDACIMLEEDDKEQMAFDLYRAATNVYIK 100 (233)
Q Consensus 50 -----------------------------~~l~~lg~~~~~g~~~~A~~~~~~Al~~~~~~g~~~~~~~~l~~lg~~~~~ 100 (233)
.+|..++.+++.+++-.++.+|.+|+.++...+... -..+++|+|..+..
T Consensus 386 ya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e~~d~~~sL~~~~~A~d~L~~~~~~i-p~E~LNNvaslhf~ 464 (1018)
T KOG2002|consen 386 YAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLLEQTDPWASLDAYGNALDILESKGKQI-PPEVLNNVASLHFR 464 (1018)
T ss_pred HHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHcCCCC-CHHHHHhHHHHHHH
Confidence 245555666667777777888888888888877663 34688888888888
Q ss_pred hccHHHHHHHHHHHHHHHhHccCc-c---hHHHhHHHHHHHHHhhCCHHHHHHHHHHhh-cCCCCCCchHHHHHHHHH-H
Q 026767 101 LEKYADAATFLLRWGLAADKCNAT-N---SQCKAYLSAIIVYLYANDFKQAEKCYNDCS-QVDAFLRSDQNRCATKLI-S 174 (233)
Q Consensus 101 ~g~~~~A~~~~~~al~~~~~~~~~-~---~~a~~~~~lg~~~~~~gd~~~A~~~~~~al-~~~~~~~~~e~~~l~~L~-~ 174 (233)
+|.+.+|..+|.+|+..+....+. . ......++++.|.-..++++.|.+.|...+ ..|++.+ .-..|| -
T Consensus 465 ~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~YId-----~ylRl~~m 539 (1018)
T KOG2002|consen 465 LGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPGYID-----AYLRLGCM 539 (1018)
T ss_pred hcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCchhHH-----HHHHhhHH
Confidence 888888888888888775532211 1 112234888888888888888888888877 5565522 222333 2
Q ss_pred HHhcCCHHHHHHHHhhc-ccccchHH
Q 026767 175 AYTEGDVEEIKRVAQSS-AISNLDHV 199 (233)
Q Consensus 175 a~~~gd~~~a~~~~~~~-~~~~ld~~ 199 (233)
+-..+....+...++.. .+....+.
T Consensus 540 a~~k~~~~ea~~~lk~~l~~d~~np~ 565 (1018)
T KOG2002|consen 540 ARDKNNLYEASLLLKDALNIDSSNPN 565 (1018)
T ss_pred HHhccCcHHHHHHHHHHHhcccCCcH
Confidence 22456666667777766 44444443
No 67
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.78 E-value=6.5e-08 Score=65.19 Aligned_cols=93 Identities=20% Similarity=0.238 Sum_probs=63.8
Q ss_pred HHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHccCcchHHH
Q 026767 51 ALAKAARALE-DAVPEDAIQLYTDACIMLEEDDKEQMAFDLYRAATNVYIKLEKYADAATFLLRWGLAADKCNATNSQCK 129 (233)
Q Consensus 51 ~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~~~~~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~ 129 (233)
++.++|.++. .|++++|+.++++++...+... .++..+|.++...+++++|+.+|++++.+.... ..
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~------~~ 69 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNA------DAYYNLAAAYYKLGKYEEALEDYEKALELDPDN------AK 69 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccH------HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcc------hh
Confidence 3566677776 6777777777777776654321 456677777777788888888777777543211 14
Q ss_pred hHHHHHHHHHhhCCHHHHHHHHHHhh
Q 026767 130 AYLSAIIVYLYANDFKQAEKCYNDCS 155 (233)
Q Consensus 130 ~~~~lg~~~~~~gd~~~A~~~~~~al 155 (233)
++..++.++...|++.+|...+.+++
T Consensus 70 ~~~~~~~~~~~~~~~~~a~~~~~~~~ 95 (100)
T cd00189 70 AYYNLGLAYYKLGKYEEALEAYEKAL 95 (100)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 56777777777788888877777765
No 68
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=98.77 E-value=4e-07 Score=86.57 Aligned_cols=152 Identities=14% Similarity=0.095 Sum_probs=119.1
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 026767 17 ALAKELHNWREVADFYRKASELYNECGRSQPASDALAKAARALE-DAVPEDAIQLYTDACIMLEEDDKEQMAFDLYRAAT 95 (233)
Q Consensus 17 ~~~~~~g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~~~~~~~~l~~lg 95 (233)
.+....|++++|+..+.++..+- ...+.++..+|.++. .|++++|++.|++++++.+... .+...++
T Consensus 23 ~ia~~~g~~~~A~~~~~~~~~~~------~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~------~a~~~la 90 (765)
T PRK10049 23 QIALWAGQDAEVITVYNRYRVHM------QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQND------DYQRGLI 90 (765)
T ss_pred HHHHHcCCHHHHHHHHHHHHhhC------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH------HHHHHHH
Confidence 44556899999998888876521 334677999999999 7999999999999998866432 3567899
Q ss_pred HHHHHhccHHHHHHHHHHHHHHHhHccCcchHHHhHHHHHHHHHhhCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHH
Q 026767 96 NVYIKLEKYADAATFLLRWGLAADKCNATNSQCKAYLSAIIVYLYANDFKQAEKCYNDCSQVDAFLRSDQNRCATKLISA 175 (233)
Q Consensus 96 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~gd~~~A~~~~~~al~~~~~~~~~e~~~l~~L~~a 175 (233)
.++...|++++|+.++++++... +.... +..+|.++...|++.+|+..+++++.... ....+...++.+
T Consensus 91 ~~l~~~g~~~eA~~~l~~~l~~~------P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P----~~~~~~~~la~~ 159 (765)
T PRK10049 91 LTLADAGQYDEALVKAKQLVSGA------PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAP----QTQQYPTEYVQA 159 (765)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC------CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCC----CCHHHHHHHHHH
Confidence 99999999999999999998752 22233 78899999999999999999999985431 124444556777
Q ss_pred H-hcCCHHHHHHHHhhc
Q 026767 176 Y-TEGDVEEIKRVAQSS 191 (233)
Q Consensus 176 ~-~~gd~~~a~~~~~~~ 191 (233)
+ ..+..+.|...++..
T Consensus 160 l~~~~~~e~Al~~l~~~ 176 (765)
T PRK10049 160 LRNNRLSAPALGAIDDA 176 (765)
T ss_pred HHHCCChHHHHHHHHhC
Confidence 7 678888888877765
No 69
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=98.76 E-value=2.1e-07 Score=77.93 Aligned_cols=131 Identities=20% Similarity=0.131 Sum_probs=88.1
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCChH
Q 026767 7 DAAKHMESAAALAKELHNWREVADFYRKASELYNECGRSQPASDALAKAARALE-DAVPEDAIQLYTDACIMLEEDDKEQ 85 (233)
Q Consensus 7 ~~a~~~~~~g~~~~~~g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~~~ 85 (233)
.....+...|.++.+.|++++|+.+|++|+.+.- .-..+...++.++. .|+++++.+.+.......+....
T Consensus 144 ~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P------~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~-- 215 (280)
T PF13429_consen 144 DSARFWLALAEIYEQLGDPDKALRDYRKALELDP------DDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPD-- 215 (280)
T ss_dssp T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-T------T-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCC--
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC------CCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHH--
Confidence 4567788999999999999999999999999862 23445677888888 79999977777776666644332
Q ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHccCcchHHHhHHHHHHHHHhhCCHHHHHHHHHHhh
Q 026767 86 MAFDLYRAATNVYIKLEKYADAATFLLRWGLAADKCNATNSQCKAYLSAIIVYLYANDFKQAEKCYNDCS 155 (233)
Q Consensus 86 ~~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~gd~~~A~~~~~~al 155 (233)
.+..+|.++..+|++++|+.+|++++.. .+.....+..++.++...|+.++|...+.+++
T Consensus 216 ----~~~~la~~~~~lg~~~~Al~~~~~~~~~------~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 216 ----LWDALAAAYLQLGRYEEALEYLEKALKL------NPDDPLWLLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp ----HCHHHHHHHHHHT-HHHHHHHHHHHHHH------STT-HHHHHHHHHHHT----------------
T ss_pred ----HHHHHHHHhccccccccccccccccccc------cccccccccccccccccccccccccccccccc
Confidence 4567899999999999999999998864 23344577899999999999999999999876
No 70
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.75 E-value=6.5e-08 Score=65.20 Aligned_cols=95 Identities=24% Similarity=0.235 Sum_probs=81.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCChHHHHH
Q 026767 11 HMESAAALAKELHNWREVADFYRKASELYNECGRSQPASDALAKAARALE-DAVPEDAIQLYTDACIMLEEDDKEQMAFD 89 (233)
Q Consensus 11 ~~~~~g~~~~~~g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~~~~~~~ 89 (233)
++.++|.++...|++++|+.++++++...... ..++..+|.++. .+++++|++++++++.+.+... .
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~------~ 69 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDN------ADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNA------K 69 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCcc------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcch------h
Confidence 57788999999999999999999998874322 267889999999 7999999999999998866543 5
Q ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHH
Q 026767 90 LYRAATNVYIKLEKYADAATFLLRWGLA 117 (233)
Q Consensus 90 ~l~~lg~~~~~~g~~~~A~~~~~~al~~ 117 (233)
++..+|.++...|++++|..++.+++..
T Consensus 70 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 97 (100)
T cd00189 70 AYYNLGLAYYKLGKYEEALEAYEKALEL 97 (100)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHcc
Confidence 7889999999999999999999988754
No 71
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.75 E-value=2.4e-07 Score=75.07 Aligned_cols=140 Identities=14% Similarity=0.093 Sum_probs=105.7
Q ss_pred HHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHccCcchHHHh
Q 026767 52 LAKAARALE-DAVPEDAIQLYTDACIMLEEDDKEQMAFDLYRAATNVYIKLEKYADAATFLLRWGLAADKCNATNSQCKA 130 (233)
Q Consensus 52 l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~~~~~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~ 130 (233)
+.-.|+... .|++.+|+..++++..+.+... ..++.+|-+|.+.|+++.|..-|.+++++.- .....
T Consensus 103 l~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~------~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~------~~p~~ 170 (257)
T COG5010 103 LAAQGKNQIRNGNFGEAVSVLRKAARLAPTDW------EAWNLLGAALDQLGRFDEARRAYRQALELAP------NEPSI 170 (257)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHHhccCCCCh------hhhhHHHHHHHHccChhHHHHHHHHHHHhcc------CCchh
Confidence 333677767 6999999999999998877643 5788899999999999999999999998742 33456
Q ss_pred HHHHHHHHHhhCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHH-hcCCHHHHHHHHhhc-ccccchHHHHHHhccC
Q 026767 131 YLSAIIVYLYANDFKQAEKCYNDCSQVDAFLRSDQNRCATKLISAY-TEGDVEEIKRVAQSS-AISNLDHVIIKLARKL 207 (233)
Q Consensus 131 ~~~lg~~~~~~gd~~~A~~~~~~al~~~~~~~~~e~~~l~~L~~a~-~~gd~~~a~~~~~~~-~~~~ld~~~~~l~~~l 207 (233)
+.|+|..+.-.||+..|+.++..+...+.- ...+..+|..+. ..||++.|+....+- .-..-++.+.-|..-.
T Consensus 171 ~nNlgms~~L~gd~~~A~~lll~a~l~~~a----d~~v~~NLAl~~~~~g~~~~A~~i~~~e~~~~~~~~~~~~l~~~~ 245 (257)
T COG5010 171 ANNLGMSLLLRGDLEDAETLLLPAYLSPAA----DSRVRQNLALVVGLQGDFREAEDIAVQELLSEQAANNVAALRAAA 245 (257)
T ss_pred hhhHHHHHHHcCCHHHHHHHHHHHHhCCCC----chHHHHHHHHHHhhcCChHHHHhhccccccchhHhhHHHHHHHhh
Confidence 789999999999999999999988754432 245677777777 789999998887766 4444455555444433
No 72
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=98.74 E-value=4.8e-06 Score=66.55 Aligned_cols=172 Identities=17% Similarity=0.074 Sum_probs=121.7
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCCh
Q 026767 6 WDAAKHMESAAALAKELHNWREVADFYRKASELYNECGRSQPASDALAKAARALE-DAVPEDAIQLYTDACIMLEEDDKE 84 (233)
Q Consensus 6 ~~~a~~~~~~g~~~~~~g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~~ 84 (233)
..-++.+-..|..+...|++.+|+..|++....|.. ...+..+...+|.++. .|++++|+..|++-+..++.....
T Consensus 2 ~~~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~---s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~ 78 (203)
T PF13525_consen 2 EDTAEALYQKALEALQQGDYEEAIKLFEKLIDRYPN---SPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKA 78 (203)
T ss_dssp ---HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT---STTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTH
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC---ChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcch
Confidence 345677888888888999999999999999988743 3356677889999999 899999999999999999987653
Q ss_pred HHHHHHHHHHHHHHHHhc-----------cHHHHHHHHHHHHHHHhHccC-----------cchHHHhHHHHHHHHHhhC
Q 026767 85 QMAFDLYRAATNVYIKLE-----------KYADAATFLLRWGLAADKCNA-----------TNSQCKAYLSAIIVYLYAN 142 (233)
Q Consensus 85 ~~~~~~l~~lg~~~~~~g-----------~~~~A~~~~~~al~~~~~~~~-----------~~~~a~~~~~lg~~~~~~g 142 (233)
..++..+|.++..+. ...+|+..|+..+..+-...- ....+..-+.+|..|...|
T Consensus 79 ---~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~~ 155 (203)
T PF13525_consen 79 ---DYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELYIARFYYKRG 155 (203)
T ss_dssp ---HHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred ---hhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence 356777777765543 345888888888765543321 2233444578899999999
Q ss_pred CHHHHHHHHHHhhcC-CCCCCchHHHHHHHHHHHH-hcCCHHHHH
Q 026767 143 DFKQAEKCYNDCSQV-DAFLRSDQNRCATKLISAY-TEGDVEEIK 185 (233)
Q Consensus 143 d~~~A~~~~~~al~~-~~~~~~~e~~~l~~L~~a~-~~gd~~~a~ 185 (233)
.|..|...++.++.. ++. .....++..|++++ ..|....+.
T Consensus 156 ~y~aA~~r~~~v~~~yp~t--~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 156 KYKAAIIRFQYVIENYPDT--PAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp -HHHHHHHHHHHHHHSTTS--HHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred cHHHHHHHHHHHHHHCCCC--chHHHHHHHHHHHHHHhCChHHHH
Confidence 999999999998733 332 22334788888988 788877544
No 73
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.74 E-value=1.4e-07 Score=77.87 Aligned_cols=100 Identities=21% Similarity=0.247 Sum_probs=82.7
Q ss_pred HHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHccCcc
Q 026767 47 PASDALAKAARALE-DAVPEDAIQLYTDACIMLEEDDKEQMAFDLYRAATNVYIKLEKYADAATFLLRWGLAADKCNATN 125 (233)
Q Consensus 47 ~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~~~~~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 125 (233)
..|..+.+=|.-+. .++|.+|+..|.+||++-+.. +..|.+-+.+|.++|.|+.|++-++.++.+ .+
T Consensus 79 ~~AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~n------AVyycNRAAAy~~Lg~~~~AVkDce~Al~i------Dp 146 (304)
T KOG0553|consen 79 ALAESLKNEGNKLMKNKDYQEAVDKYTEAIELDPTN------AVYYCNRAAAYSKLGEYEDAVKDCESALSI------DP 146 (304)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCc------chHHHHHHHHHHHhcchHHHHHHHHHHHhc------Ch
Confidence 34555666666666 689999999999999987653 247788999999999999999999999975 44
Q ss_pred hHHHhHHHHHHHHHhhCCHHHHHHHHHHhhcCC
Q 026767 126 SQCKAYLSAIIVYLYANDFKQAEKCYNDCSQVD 158 (233)
Q Consensus 126 ~~a~~~~~lg~~~~~~gd~~~A~~~~~~al~~~ 158 (233)
.-.++|..+|++|+.+|++.+|++.|.+++.+.
T Consensus 147 ~yskay~RLG~A~~~~gk~~~A~~aykKaLeld 179 (304)
T KOG0553|consen 147 HYSKAYGRLGLAYLALGKYEEAIEAYKKALELD 179 (304)
T ss_pred HHHHHHHHHHHHHHccCcHHHHHHHHHhhhccC
Confidence 557889999999999999999999999998653
No 74
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.73 E-value=8.1e-07 Score=67.39 Aligned_cols=100 Identities=13% Similarity=0.044 Sum_probs=85.9
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCChHH
Q 026767 8 AAKHMESAAALAKELHNWREVADFYRKASELYNECGRSQPASDALAKAARALE-DAVPEDAIQLYTDACIMLEEDDKEQM 86 (233)
Q Consensus 8 ~a~~~~~~g~~~~~~g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~~~~ 86 (233)
.-+.+..+|..+...|++++|...|+-...+- + ..+.-+.++|.++. .|++++|+..|.+|+.+-++..
T Consensus 34 ~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~D-----p-~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp---- 103 (157)
T PRK15363 34 PLNTLYRYAMQLMEVKEFAGAARLFQLLTIYD-----A-WSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAP---- 103 (157)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-----c-ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCc----
Confidence 34556667777788999999999999887763 3 46788999999999 8999999999999999986433
Q ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHh
Q 026767 87 AFDLYRAATNVYIKLEKYADAATFLLRWGLAAD 119 (233)
Q Consensus 87 ~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~ 119 (233)
.++.++|.++...|+.+.|...|+.++..+.
T Consensus 104 --~~~~~ag~c~L~lG~~~~A~~aF~~Ai~~~~ 134 (157)
T PRK15363 104 --QAPWAAAECYLACDNVCYAIKALKAVVRICG 134 (157)
T ss_pred --hHHHHHHHHHHHcCCHHHHHHHHHHHHHHhc
Confidence 4788999999999999999999999999883
No 75
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.72 E-value=2.1e-07 Score=80.13 Aligned_cols=138 Identities=15% Similarity=0.113 Sum_probs=104.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHH-------------H----cCCc--------------hHHHHHHHHHHHHh
Q 026767 11 HMESAAALAKELHNWREVADFYRKASELYN-------------E----CGRS--------------QPASDALAKAARAL 59 (233)
Q Consensus 11 ~~~~~g~~~~~~g~~~eA~~~~~~A~~l~~-------------~----~g~~--------------~~~a~~l~~lg~~~ 59 (233)
.....+.++...|++++|+.+++++++.+- . .|.. .....++..+|.++
T Consensus 45 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~ 124 (355)
T cd05804 45 RAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALKLHLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGL 124 (355)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHhHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHH
Confidence 344556777778999999999888776421 1 1111 22223445667788
Q ss_pred h-hCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHccCcchHHHhHHHHHHHH
Q 026767 60 E-DAVPEDAIQLYTDACIMLEEDDKEQMAFDLYRAATNVYIKLEKYADAATFLLRWGLAADKCNATNSQCKAYLSAIIVY 138 (233)
Q Consensus 60 ~-~g~~~~A~~~~~~Al~~~~~~g~~~~~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~ 138 (233)
. .|++++|+..+++++++.+.. ..++..+|.++...|++++|+.++++++..... ........+..++.++
T Consensus 125 ~~~G~~~~A~~~~~~al~~~p~~------~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~--~~~~~~~~~~~la~~~ 196 (355)
T cd05804 125 EEAGQYDRAEEAARRALELNPDD------AWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDC--SSMLRGHNWWHLALFY 196 (355)
T ss_pred HHcCCHHHHHHHHHHHHhhCCCC------cHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCC--CcchhHHHHHHHHHHH
Confidence 8 799999999999999987654 357888999999999999999999999976433 2233345678899999
Q ss_pred HhhCCHHHHHHHHHHhhc
Q 026767 139 LYANDFKQAEKCYNDCSQ 156 (233)
Q Consensus 139 ~~~gd~~~A~~~~~~al~ 156 (233)
+..|++++|...|++++.
T Consensus 197 ~~~G~~~~A~~~~~~~~~ 214 (355)
T cd05804 197 LERGDYEAALAIYDTHIA 214 (355)
T ss_pred HHCCCHHHHHHHHHHHhc
Confidence 999999999999999863
No 76
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.72 E-value=1.4e-07 Score=64.38 Aligned_cols=83 Identities=16% Similarity=0.148 Sum_probs=62.6
Q ss_pred hCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHccCcchHHHhHHHHHHHHHh
Q 026767 61 DAVPEDAIQLYTDACIMLEEDDKEQMAFDLYRAATNVYIKLEKYADAATFLLRWGLAADKCNATNSQCKAYLSAIIVYLY 140 (233)
Q Consensus 61 ~g~~~~A~~~~~~Al~~~~~~g~~~~~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~ 140 (233)
+|+++.|+.+|++.++..+. ++ ....+..+|.++.++|+|++|+.++++ ... +. ....+...+|.|++.
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~--~~--~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~----~~--~~~~~~~l~a~~~~~ 70 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPT--NP--NSAYLYNLAQCYFQQGKYEEAIELLQK-LKL----DP--SNPDIHYLLARCLLK 70 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCG--TH--HHHHHHHHHHHHHHTTHHHHHHHHHHC-HTH----HH--CHHHHHHHHHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCC--Ch--hHHHHHHHHHHHHHCCCHHHHHHHHHH-hCC----CC--CCHHHHHHHHHHHHH
Confidence 47899999999999988885 11 224677799999999999999999988 322 11 224455667999999
Q ss_pred hCCHHHHHHHHHHh
Q 026767 141 ANDFKQAEKCYNDC 154 (233)
Q Consensus 141 ~gd~~~A~~~~~~a 154 (233)
+|++++|+++|+++
T Consensus 71 l~~y~eAi~~l~~~ 84 (84)
T PF12895_consen 71 LGKYEEAIKALEKA 84 (84)
T ss_dssp TT-HHHHHHHHHHH
T ss_pred hCCHHHHHHHHhcC
Confidence 99999999999875
No 77
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.71 E-value=3.7e-07 Score=67.61 Aligned_cols=99 Identities=12% Similarity=0.083 Sum_probs=80.1
Q ss_pred HHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHccCcc
Q 026767 47 PASDALAKAARALE-DAVPEDAIQLYTDACIMLEEDDKEQMAFDLYRAATNVYIKLEKYADAATFLLRWGLAADKCNATN 125 (233)
Q Consensus 47 ~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~~~~~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 125 (233)
........+|..+. .|++++|++.+++++.+.+.. ..++.++|.++...|++++|+.+|++++.+. +
T Consensus 15 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~------~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~------p 82 (135)
T TIGR02552 15 EQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYN------SRYWLGLAACCQMLKEYEEAIDAYALAAALD------P 82 (135)
T ss_pred hhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCc------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC------C
Confidence 34566788888888 799999999999988875432 2577889999999999999999999988652 2
Q ss_pred hHHHhHHHHHHHHHhhCCHHHHHHHHHHhhcC
Q 026767 126 SQCKAYLSAIIVYLYANDFKQAEKCYNDCSQV 157 (233)
Q Consensus 126 ~~a~~~~~lg~~~~~~gd~~~A~~~~~~al~~ 157 (233)
.....+..+|.++...|++.+|...|++++..
T Consensus 83 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 114 (135)
T TIGR02552 83 DDPRPYFHAAECLLALGEPESALKALDLAIEI 114 (135)
T ss_pred CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 23556788999999999999999999998844
No 78
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.70 E-value=4.4e-07 Score=65.25 Aligned_cols=104 Identities=15% Similarity=0.039 Sum_probs=83.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCChHHH
Q 026767 9 AKHMESAAALAKELHNWREVADFYRKASELYNECGRSQPASDALAKAARALE-DAVPEDAIQLYTDACIMLEEDDKEQMA 87 (233)
Q Consensus 9 a~~~~~~g~~~~~~g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~~~~~ 87 (233)
++.+.+.|..+...|++++|+.+|.+++..+ .+......++..+|.++. .|++++|+.+|++++..++.... .
T Consensus 2 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~---~ 75 (119)
T TIGR02795 2 EEAYYDAALLVLKAGDYADAIQAFQAFLKKY---PKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPK---A 75 (119)
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC---CCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCc---c
Confidence 3567888899999999999999999998764 222234667888999999 79999999999999987754321 1
Q ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Q 026767 88 FDLYRAATNVYIKLEKYADAATFLLRWGLAA 118 (233)
Q Consensus 88 ~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~ 118 (233)
..++..+|.++..+|++++|+.++++++...
T Consensus 76 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~ 106 (119)
T TIGR02795 76 PDALLKLGMSLQELGDKEKAKATLQQVIKRY 106 (119)
T ss_pred cHHHHHHHHHHHHhCChHHHHHHHHHHHHHC
Confidence 2468889999999999999999999998764
No 79
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.70 E-value=8.2e-07 Score=78.29 Aligned_cols=154 Identities=16% Similarity=0.170 Sum_probs=119.4
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc---------------------CCchHHHHHHHHHHHHhh-hCCH
Q 026767 7 DAAKHMESAAALAKELHNWREVADFYRKASELYNEC---------------------GRSQPASDALAKAARALE-DAVP 64 (233)
Q Consensus 7 ~~a~~~~~~g~~~~~~g~~~eA~~~~~~A~~l~~~~---------------------g~~~~~a~~l~~lg~~~~-~g~~ 64 (233)
-.++++..+|+.|...++++.++.+|++++.-++.- -++.. +.-...-|.-+. .|+|
T Consensus 296 lIak~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~-A~e~r~kGne~Fk~gdy 374 (539)
T KOG0548|consen 296 LIAKALARLGNAYTKREDYEGAIKYYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEK-AEEEREKGNEAFKKGDY 374 (539)
T ss_pred HHHHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhH-HHHHHHHHHHHHhccCH
Confidence 367778889999999999999999999999877640 11111 222223355555 7999
Q ss_pred HHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHccCcchHHHhHHHHHHHHHhhCCH
Q 026767 65 EDAIQLYTDACIMLEEDDKEQMAFDLYRAATNVYIKLEKYADAATFLLRWGLAADKCNATNSQCKAYLSAIIVYLYANDF 144 (233)
Q Consensus 65 ~~A~~~~~~Al~~~~~~g~~~~~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~gd~ 144 (233)
..|+.+|.+|+..-+.. +..+.|.+.+|.++|.+..|+.-++.++++ .+...+.|+.-|.++..+.+|
T Consensus 375 ~~Av~~YteAIkr~P~D------a~lYsNRAac~~kL~~~~~aL~Da~~~ieL------~p~~~kgy~RKg~al~~mk~y 442 (539)
T KOG0548|consen 375 PEAVKHYTEAIKRDPED------ARLYSNRAACYLKLGEYPEALKDAKKCIEL------DPNFIKAYLRKGAALRAMKEY 442 (539)
T ss_pred HHHHHHHHHHHhcCCch------hHHHHHHHHHHHHHhhHHHHHHHHHHHHhc------CchHHHHHHHHHHHHHHHHHH
Confidence 99999999988776432 368999999999999999999999999876 444567788889999999999
Q ss_pred HHHHHHHHHhhcCCCCCCchHHHHHHHHHHHHh
Q 026767 145 KQAEKCYNDCSQVDAFLRSDQNRCATKLISAYT 177 (233)
Q Consensus 145 ~~A~~~~~~al~~~~~~~~~e~~~l~~L~~a~~ 177 (233)
++|.+.|++++... +...+++..+.++++
T Consensus 443 dkAleay~eale~d----p~~~e~~~~~~rc~~ 471 (539)
T KOG0548|consen 443 DKALEAYQEALELD----PSNAEAIDGYRRCVE 471 (539)
T ss_pred HHHHHHHHHHHhcC----chhHHHHHHHHHHHH
Confidence 99999999998543 344667777777663
No 80
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=98.70 E-value=5.9e-06 Score=67.93 Aligned_cols=172 Identities=10% Similarity=-0.031 Sum_probs=127.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCChHHHH
Q 026767 10 KHMESAAALAKELHNWREVADFYRKASELYNECGRSQPASDALAKAARALE-DAVPEDAIQLYTDACIMLEEDDKEQMAF 88 (233)
Q Consensus 10 ~~~~~~g~~~~~~g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~~~~~~ 88 (233)
..+...|..+...|++++|+..|++.+..+... .-...+...+|.++. .+++++|+.+|++.+..++...+. .
T Consensus 33 ~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s---~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~---~ 106 (243)
T PRK10866 33 SEIYATAQQKLQDGNWKQAITQLEALDNRYPFG---PYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNI---D 106 (243)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC---hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCch---H
Confidence 334455666667899999999999999977522 456667889999999 799999999999999999988754 3
Q ss_pred HHHHHHHHHHHHhc------------------cHHHHHHHHHHHHHHHhHcc-----------CcchHHHhHHHHHHHHH
Q 026767 89 DLYRAATNVYIKLE------------------KYADAATFLLRWGLAADKCN-----------ATNSQCKAYLSAIIVYL 139 (233)
Q Consensus 89 ~~l~~lg~~~~~~g------------------~~~~A~~~~~~al~~~~~~~-----------~~~~~a~~~~~lg~~~~ 139 (233)
.++..+|.++..++ ...+|+..|++.+..+-+.. .+...+.--+.+|.-|.
T Consensus 107 ~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~la~~e~~ia~~Y~ 186 (243)
T PRK10866 107 YVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYELSVAEYYT 186 (243)
T ss_pred HHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46777777654443 13467788888776553321 11223444478889999
Q ss_pred hhCCHHHHHHHHHHhhc-CCCCCCchHHHHHHHHHHHH-hcCCHHHHHHHHh
Q 026767 140 YANDFKQAEKCYNDCSQ-VDAFLRSDQNRCATKLISAY-TEGDVEEIKRVAQ 189 (233)
Q Consensus 140 ~~gd~~~A~~~~~~al~-~~~~~~~~e~~~l~~L~~a~-~~gd~~~a~~~~~ 189 (233)
+.|.|..|...++..+. -+.. ...-++|.-+.+++ ..|..+.+....+
T Consensus 187 ~~~~y~AA~~r~~~v~~~Yp~t--~~~~eal~~l~~ay~~lg~~~~a~~~~~ 236 (243)
T PRK10866 187 KRGAYVAVVNRVEQMLRDYPDT--QATRDALPLMENAYRQLQLNAQADKVAK 236 (243)
T ss_pred HcCchHHHHHHHHHHHHHCCCC--chHHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 99999999999999873 3332 23445788889999 7999999887664
No 81
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.70 E-value=3.1e-06 Score=63.92 Aligned_cols=128 Identities=16% Similarity=0.087 Sum_probs=93.1
Q ss_pred HHHHHHhhhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHccCcchHHHhHH
Q 026767 53 AKAARALEDAVPEDAIQLYTDACIMLEEDDKEQMAFDLYRAATNVYIKLEKYADAATFLLRWGLAADKCNATNSQCKAYL 132 (233)
Q Consensus 53 ~~lg~~~~~g~~~~A~~~~~~Al~~~~~~g~~~~~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~ 132 (233)
..+-..+..+++..+...+++-+.-+. +...+..+...+|.++...|++++|...|++++... .+......+.+
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~l~~~~~---~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~---~d~~l~~~a~l 89 (145)
T PF09976_consen 16 EQALQALQAGDPAKAEAAAEQLAKDYP---SSPYAALAALQLAKAAYEQGDYDEAKAALEKALANA---PDPELKPLARL 89 (145)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHCC---CChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC---CCHHHHHHHHH
Confidence 333333335666666554554444333 333455678889999999999999999999998742 34444556779
Q ss_pred HHHHHHHhhCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHH-hcCCHHHHHHHHhhc
Q 026767 133 SAIIVYLYANDFKQAEKCYNDCSQVDAFLRSDQNRCATKLISAY-TEGDVEEIKRVAQSS 191 (233)
Q Consensus 133 ~lg~~~~~~gd~~~A~~~~~~al~~~~~~~~~e~~~l~~L~~a~-~~gd~~~a~~~~~~~ 191 (233)
.++.+++..|++++|+..++... . ......+...+|+++ ..||.+.|+.+++.+
T Consensus 90 ~LA~~~~~~~~~d~Al~~L~~~~-~----~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 90 RLARILLQQGQYDEALATLQQIP-D----EAFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHHHcCCHHHHHHHHHhcc-C----cchHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 99999999999999999997632 1 223456777899988 899999999998875
No 82
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.69 E-value=2.7e-07 Score=68.34 Aligned_cols=100 Identities=15% Similarity=0.029 Sum_probs=85.8
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCChH
Q 026767 7 DAAKHMESAAALAKELHNWREVADFYRKASELYNECGRSQPASDALAKAARALE-DAVPEDAIQLYTDACIMLEEDDKEQ 85 (233)
Q Consensus 7 ~~a~~~~~~g~~~~~~g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~~~ 85 (233)
.....+...|..+...|++++|+.++++++.+. + ....++.++|.++. .|++++|+.+|++++.+.+..
T Consensus 15 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-----p-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~---- 84 (135)
T TIGR02552 15 EQLEQIYALAYNLYQQGRYDEALKLFQLLAAYD-----P-YNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDD---- 84 (135)
T ss_pred hhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC-----C-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC----
Confidence 345778899999999999999999999998863 2 24678889999998 899999999999999886442
Q ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Q 026767 86 MAFDLYRAATNVYIKLEKYADAATFLLRWGLAA 118 (233)
Q Consensus 86 ~~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~ 118 (233)
...+..+|.++...|++++|+..|++++.+.
T Consensus 85 --~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 115 (135)
T TIGR02552 85 --PRPYFHAAECLLALGEPESALKALDLAIEIC 115 (135)
T ss_pred --hHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 2577889999999999999999999999864
No 83
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.68 E-value=1.5e-06 Score=63.46 Aligned_cols=101 Identities=19% Similarity=0.133 Sum_probs=74.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCChHHHH
Q 026767 10 KHMESAAALAKELHNWREVADFYRKASELYNECGRSQPASDALAKAARALE-DAVPEDAIQLYTDACIMLEEDDKEQMAF 88 (233)
Q Consensus 10 ~~~~~~g~~~~~~g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~~~~~~ 88 (233)
++..+.|.++...|+.++|+.+|++|+..- . +......++.++|..+. .|++++|+..+++++.-++..+...
T Consensus 2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~g--L-~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~--- 75 (120)
T PF12688_consen 2 RALYELAWAHDSLGREEEAIPLYRRALAAG--L-SGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNA--- 75 (120)
T ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHcC--C-CchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccH---
Confidence 456778888888999999999999997731 1 12244568888899888 7999999999998887665533221
Q ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHH
Q 026767 89 DLYRAATNVYIKLEKYADAATFLLRWGL 116 (233)
Q Consensus 89 ~~l~~lg~~~~~~g~~~~A~~~~~~al~ 116 (233)
.+..-++.++...|++++|+..+-.++.
T Consensus 76 ~l~~f~Al~L~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 76 ALRVFLALALYNLGRPKEALEWLLEALA 103 (120)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 2334467788888999999988877764
No 84
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.67 E-value=5.5e-07 Score=64.73 Aligned_cols=102 Identities=20% Similarity=0.067 Sum_probs=82.1
Q ss_pred HHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHccCcchHH
Q 026767 50 DALAKAARALE-DAVPEDAIQLYTDACIMLEEDDKEQMAFDLYRAATNVYIKLEKYADAATFLLRWGLAADKCNATNSQC 128 (233)
Q Consensus 50 ~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~~~~~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a 128 (233)
..+...|..+. .|++++|+..|.+++..++... ....++..+|.++...|++++|+.+|++++.... ......
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p---~~~~~~ 76 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKST---YAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYP---KSPKAP 76 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcc---ccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCC---CCCccc
Confidence 56778888888 7999999999999997765322 1235788899999999999999999999986532 222234
Q ss_pred HhHHHHHHHHHhhCCHHHHHHHHHHhhcC
Q 026767 129 KAYLSAIIVYLYANDFKQAEKCYNDCSQV 157 (233)
Q Consensus 129 ~~~~~lg~~~~~~gd~~~A~~~~~~al~~ 157 (233)
.++..+|.++...|++.+|...+++++..
T Consensus 77 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 77 DALLKLGMSLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHHH
Confidence 56899999999999999999999998743
No 85
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=98.67 E-value=1.9e-07 Score=61.08 Aligned_cols=63 Identities=13% Similarity=0.283 Sum_probs=56.0
Q ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHccCcchHHHhHHHHHHHHHhhC-CHHHHHHHHHHhhc
Q 026767 88 FDLYRAATNVYIKLEKYADAATFLLRWGLAADKCNATNSQCKAYLSAIIVYLYAN-DFKQAEKCYNDCSQ 156 (233)
Q Consensus 88 ~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g-d~~~A~~~~~~al~ 156 (233)
+.++..+|.++...|+|++|+.+|++++.+ .+..+.++.++|.++..+| ++.+|++.+++++.
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~------~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIEL------DPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHH------STTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc------CCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 468899999999999999999999999986 3445678999999999999 79999999999874
No 86
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.67 E-value=6.7e-07 Score=76.69 Aligned_cols=105 Identities=17% Similarity=0.158 Sum_probs=83.2
Q ss_pred HHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcC---------ChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Q 026767 48 ASDALAKAARALE-DAVPEDAIQLYTDACIMLEEDD---------KEQMAFDLYRAATNVYIKLEKYADAATFLLRWGLA 117 (233)
Q Consensus 48 ~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g---------~~~~~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~ 117 (233)
+|.....-|..|. .|+|..|+..|++|+.++.... -......|+.|++.++.++++|.+|+..+.++|++
T Consensus 207 ~A~~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~ 286 (397)
T KOG0543|consen 207 AADRKKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLEL 286 (397)
T ss_pred HHHHHHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhc
Confidence 4445555566666 6788888888888887776322 11122358999999999999999999999999975
Q ss_pred HhHccCcchHHHhHHHHHHHHHhhCCHHHHHHHHHHhhcCC
Q 026767 118 ADKCNATNSQCKAYLSAIIVYLYANDFKQAEKCYNDCSQVD 158 (233)
Q Consensus 118 ~~~~~~~~~~a~~~~~lg~~~~~~gd~~~A~~~~~~al~~~ 158 (233)
.+...++++.-|.+++.+|+|+.|+..|++++.+.
T Consensus 287 ------~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~ 321 (397)
T KOG0543|consen 287 ------DPNNVKALYRRGQALLALGEYDLARDDFQKALKLE 321 (397)
T ss_pred ------CCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhC
Confidence 45667899999999999999999999999999654
No 87
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.65 E-value=4.5e-07 Score=80.51 Aligned_cols=96 Identities=11% Similarity=0.038 Sum_probs=72.5
Q ss_pred HHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHccCcchHH
Q 026767 50 DALAKAARALE-DAVPEDAIQLYTDACIMLEEDDKEQMAFDLYRAATNVYIKLEKYADAATFLLRWGLAADKCNATNSQC 128 (233)
Q Consensus 50 ~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~~~~~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a 128 (233)
.+..-+|.+|. .|+|++|+.+|+.||..-+... ..+++||-.+....++.+|+..|+||+.+ .++-.
T Consensus 431 dvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd~------~lWNRLGAtLAN~~~s~EAIsAY~rALqL------qP~yV 498 (579)
T KOG1125|consen 431 DVQSGLGVLYNLSGEFDRAVDCFEAALQVKPNDY------LLWNRLGATLANGNRSEEAISAYNRALQL------QPGYV 498 (579)
T ss_pred hHHhhhHHHHhcchHHHHHHHHHHHHHhcCCchH------HHHHHhhHHhcCCcccHHHHHHHHHHHhc------CCCee
Confidence 44555677777 6888888888888887655432 47788888888888888888888888865 44445
Q ss_pred HhHHHHHHHHHhhCCHHHHHHHHHHhhcC
Q 026767 129 KAYLSAIIVYLYANDFKQAEKCYNDCSQV 157 (233)
Q Consensus 129 ~~~~~lg~~~~~~gd~~~A~~~~~~al~~ 157 (233)
++..++|+.|.-+|.|.+|.++|-.++.+
T Consensus 499 R~RyNlgIS~mNlG~ykEA~~hlL~AL~m 527 (579)
T KOG1125|consen 499 RVRYNLGISCMNLGAYKEAVKHLLEALSM 527 (579)
T ss_pred eeehhhhhhhhhhhhHHHHHHHHHHHHHh
Confidence 66788888888888888888888888743
No 88
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.63 E-value=3.3e-07 Score=79.54 Aligned_cols=90 Identities=21% Similarity=0.211 Sum_probs=62.1
Q ss_pred HHHhh-hCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHccCcchHHHhHHHH
Q 026767 56 ARALE-DAVPEDAIQLYTDACIMLEEDDKEQMAFDLYRAATNVYIKLEKYADAATFLLRWGLAADKCNATNSQCKAYLSA 134 (233)
Q Consensus 56 g~~~~-~g~~~~A~~~~~~Al~~~~~~g~~~~~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~l 134 (233)
|.... .|++++|+.+|.+|+++.... ..++.++|.+|..+|++++|+..+++++.+. +....+++.+
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~~~P~~------~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~------P~~~~a~~~l 76 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAIDLDPNN------AELYADRAQANIKLGNFTEAVADANKAIELD------PSLAKAYLRK 76 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC------cCCHHHHHHH
Confidence 33333 677777777777777765532 2466777777777788888887777777652 2334567777
Q ss_pred HHHHHhhCCHHHHHHHHHHhhcC
Q 026767 135 IIVYLYANDFKQAEKCYNDCSQV 157 (233)
Q Consensus 135 g~~~~~~gd~~~A~~~~~~al~~ 157 (233)
|.++..+|++.+|+..|++++.+
T Consensus 77 g~~~~~lg~~~eA~~~~~~al~l 99 (356)
T PLN03088 77 GTACMKLEEYQTAKAALEKGASL 99 (356)
T ss_pred HHHHHHhCCHHHHHHHHHHHHHh
Confidence 77777778888888877777743
No 89
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.62 E-value=8.9e-07 Score=76.84 Aligned_cols=94 Identities=20% Similarity=0.116 Sum_probs=80.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCChHHHHHH
Q 026767 12 MESAAALAKELHNWREVADFYRKASELYNECGRSQPASDALAKAARALE-DAVPEDAIQLYTDACIMLEEDDKEQMAFDL 90 (233)
Q Consensus 12 ~~~~g~~~~~~g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~~~~~~~~ 90 (233)
+..-|......|++++|+.+|++|+.+.- ....++.++|.+|. .|++++|+..+++|+.+.+.. ..+
T Consensus 5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P------~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~------~~a 72 (356)
T PLN03088 5 LEDKAKEAFVDDDFALAVDLYTQAIDLDP------NNAELYADRAQANIKLGNFTEAVADANKAIELDPSL------AKA 72 (356)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCC------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCC------HHH
Confidence 44556666678999999999999998642 23567899999999 799999999999999987642 357
Q ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHH
Q 026767 91 YRAATNVYIKLEKYADAATFLLRWGLA 117 (233)
Q Consensus 91 l~~lg~~~~~~g~~~~A~~~~~~al~~ 117 (233)
+.++|.++..+|+|++|+.+|++++.+
T Consensus 73 ~~~lg~~~~~lg~~~eA~~~~~~al~l 99 (356)
T PLN03088 73 YLRKGTACMKLEEYQTAKAALEKGASL 99 (356)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 899999999999999999999999976
No 90
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.61 E-value=8.9e-07 Score=73.18 Aligned_cols=122 Identities=18% Similarity=0.085 Sum_probs=94.5
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCCh
Q 026767 6 WDAAKHMESAAALAKELHNWREVADFYRKASELYNECGRSQPASDALAKAARALE-DAVPEDAIQLYTDACIMLEEDDKE 84 (233)
Q Consensus 6 ~~~a~~~~~~g~~~~~~g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~~ 84 (233)
...|+.+..=|+-....++|.+|++.|.+|+.+- | .-|..|.|-+-+|. .|+++.|++-++.|+.+-+.
T Consensus 78 ~~~AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~-----P-~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~---- 147 (304)
T KOG0553|consen 78 KALAESLKNEGNKLMKNKDYQEAVDKYTEAIELD-----P-TNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPH---- 147 (304)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC-----C-CcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChH----
Confidence 3567778888888888999999999999999984 3 34566777777777 79999999999999988663
Q ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHccCcchHHHhHHHHHHHHHhhCCHH
Q 026767 85 QMAFDLYRAATNVYIKLEKYADAATFLLRWGLAADKCNATNSQCKAYLSAIIVYLYANDFK 145 (233)
Q Consensus 85 ~~~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~gd~~ 145 (233)
-..+|.++|.+|+.+|+|.+|++.|++++++- +.. .....+|..+...+++..
T Consensus 148 --yskay~RLG~A~~~~gk~~~A~~aykKaLeld-----P~N-e~~K~nL~~Ae~~l~e~~ 200 (304)
T KOG0553|consen 148 --YSKAYGRLGLAYLALGKYEEAIEAYKKALELD-----PDN-ESYKSNLKIAEQKLNEPK 200 (304)
T ss_pred --HHHHHHHHHHHHHccCcHHHHHHHHHhhhccC-----CCc-HHHHHHHHHHHHHhcCCC
Confidence 23689999999999999999999999999872 222 222355555555555443
No 91
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.60 E-value=1.7e-06 Score=63.13 Aligned_cols=100 Identities=16% Similarity=0.022 Sum_probs=77.6
Q ss_pred HHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHccCcchHH
Q 026767 50 DALAKAARALE-DAVPEDAIQLYTDACIMLEEDDKEQMAFDLYRAATNVYIKLEKYADAATFLLRWGLAADKCNATNSQC 128 (233)
Q Consensus 50 ~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~~~~~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a 128 (233)
.++.+.|.++. .|++++|+.+|++|++.-.. + .....++..+|..+..+|++++|+..+++++.-+ ++.....
T Consensus 2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~-~--~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~---p~~~~~~ 75 (120)
T PF12688_consen 2 RALYELAWAHDSLGREEEAIPLYRRALAAGLS-G--ADRRRALIQLASTLRNLGRYDEALALLEEALEEF---PDDELNA 75 (120)
T ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-c--hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC---CCccccH
Confidence 45778899999 89999999999999984211 2 2334688899999999999999999999988533 2222233
Q ss_pred HhHHHHHHHHHhhCCHHHHHHHHHHhh
Q 026767 129 KAYLSAIIVYLYANDFKQAEKCYNDCS 155 (233)
Q Consensus 129 ~~~~~lg~~~~~~gd~~~A~~~~~~al 155 (233)
.....++.+....|++.+|+..+-.++
T Consensus 76 ~l~~f~Al~L~~~gr~~eAl~~~l~~l 102 (120)
T PF12688_consen 76 ALRVFLALALYNLGRPKEALEWLLEAL 102 (120)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 344557788899999999999988876
No 92
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.60 E-value=2.7e-07 Score=81.89 Aligned_cols=101 Identities=15% Similarity=0.116 Sum_probs=88.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhh-CCHHHHHHHHHHHHHHHHhcCChHHH
Q 026767 9 AKHMESAAALAKELHNWREVADFYRKASELYNECGRSQPASDALAKAARALED-AVPEDAIQLYTDACIMLEEDDKEQMA 87 (233)
Q Consensus 9 a~~~~~~g~~~~~~g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~g~~~~~ 87 (233)
+....-+|.+|...|.|++|++||+.|+.. ...-...|+++|-.+.. .+.++||..|.+|+++.+.-
T Consensus 430 pdvQ~~LGVLy~ls~efdraiDcf~~AL~v------~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~y------ 497 (579)
T KOG1125|consen 430 PDVQSGLGVLYNLSGEFDRAVDCFEAALQV------KPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGY------ 497 (579)
T ss_pred hhHHhhhHHHHhcchHHHHHHHHHHHHHhc------CCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCe------
Confidence 456778999999999999999999999876 33567789999999994 78999999999999998853
Q ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHc
Q 026767 88 FDLYRAATNVYIKLEKYADAATFLLRWGLAADKC 121 (233)
Q Consensus 88 ~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~ 121 (233)
..+..|+|..++.+|.|.+|+.+|-.||.+.++.
T Consensus 498 VR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~ks 531 (579)
T KOG1125|consen 498 VRVRYNLGISCMNLGAYKEAVKHLLEALSMQRKS 531 (579)
T ss_pred eeeehhhhhhhhhhhhHHHHHHHHHHHHHhhhcc
Confidence 3578899999999999999999999999997764
No 93
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=98.58 E-value=3.8e-07 Score=59.62 Aligned_cols=63 Identities=17% Similarity=0.150 Sum_probs=42.9
Q ss_pred HHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhc-cHHHHHHHHHHHHHH
Q 026767 49 SDALAKAARALE-DAVPEDAIQLYTDACIMLEEDDKEQMAFDLYRAATNVYIKLE-KYADAATFLLRWGLA 117 (233)
Q Consensus 49 a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~~~~~~~~l~~lg~~~~~~g-~~~~A~~~~~~al~~ 117 (233)
|.++.+.|.++. .|++++|+.+|++|+++.+. -..++.++|.++..+| ++.+|+..+++++.+
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~------~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l 67 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPN------NAEAYYNLGLAYMKLGKDYEEAIEDFEKALKL 67 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTT------HHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC------CHHHHHHHHHHHHHhCccHHHHHHHHHHHHHc
Confidence 456677777777 67777777777777776432 1246777777777777 677777777777654
No 94
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.55 E-value=2.8e-07 Score=77.12 Aligned_cols=171 Identities=13% Similarity=0.072 Sum_probs=107.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCChHHHHHH
Q 026767 12 MESAAALAKELHNWREVADFYRKASELYNECGRSQPASDALAKAARALE-DAVPEDAIQLYTDACIMLEEDDKEQMAFDL 90 (233)
Q Consensus 12 ~~~~g~~~~~~g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~~~~~~~~ 90 (233)
-.++|.+|.++|-+.+|...++.+++-+. ....+.-++++|. ..++..|+..|.+.++.|+.. ...
T Consensus 226 k~Q~gkCylrLgm~r~AekqlqssL~q~~-------~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~------VT~ 292 (478)
T KOG1129|consen 226 KQQMGKCYLRLGMPRRAEKQLQSSLTQFP-------HPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFD------VTY 292 (478)
T ss_pred HHHHHHHHHHhcChhhhHHHHHHHhhcCC-------chhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCch------hhh
Confidence 36789999999999999998888887542 1223333444444 344445555554444444421 123
Q ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHH---------------------------h---HccCcchHHHhHHHHHHHHHh
Q 026767 91 YRAATNVYIKLEKYADAATFLLRWGLAA---------------------------D---KCNATNSQCKAYLSAIIVYLY 140 (233)
Q Consensus 91 l~~lg~~~~~~g~~~~A~~~~~~al~~~---------------------------~---~~~~~~~~a~~~~~lg~~~~~ 140 (233)
+..++.++..++++++|+++|+++++.. + +.|-. ....+.|||+|++.
T Consensus 293 l~g~ARi~eam~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~--speLf~NigLCC~y 370 (478)
T KOG1129|consen 293 LLGQARIHEAMEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ--SPELFCNIGLCCLY 370 (478)
T ss_pred hhhhHHHHHHHHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC--ChHHHhhHHHHHHh
Confidence 3444444444445555555444443311 0 11222 23467899999999
Q ss_pred hCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHH-hcCCHHHHHHHHhhcccccchH
Q 026767 141 ANDFKQAEKCYNDCSQVDAFLRSDQNRCATKLISAY-TEGDVEEIKRVAQSSAISNLDH 198 (233)
Q Consensus 141 ~gd~~~A~~~~~~al~~~~~~~~~e~~~l~~L~~a~-~~gd~~~a~~~~~~~~~~~ld~ 198 (233)
.+.++-++..|++++..... ....+.+..+|+... .-||+..|..+++-++...-++
T Consensus 371 aqQ~D~~L~sf~RAlstat~-~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h 428 (478)
T KOG1129|consen 371 AQQIDLVLPSFQRALSTATQ-PGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQH 428 (478)
T ss_pred hcchhhhHHHHHHHHhhccC-cchhhhhhhccceeEEeccchHHHHHHHHHHhccCcch
Confidence 99999999999999855432 234566888999866 7899999999999885554444
No 95
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.54 E-value=9.7e-07 Score=60.22 Aligned_cols=83 Identities=23% Similarity=0.247 Sum_probs=64.3
Q ss_pred HcCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHH
Q 026767 21 ELHNWREVADFYRKASELYNECGRSQPASDALAKAARALE-DAVPEDAIQLYTDACIMLEEDDKEQMAFDLYRAATNVYI 99 (233)
Q Consensus 21 ~~g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~~~~~~~~l~~lg~~~~ 99 (233)
+.|++++|+.+|++.+..... ++ ....+..+|.++. .|++++|+.++++ ..+-... ..+..-+|.++.
T Consensus 1 ~~~~y~~Ai~~~~k~~~~~~~--~~--~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~------~~~~~l~a~~~~ 69 (84)
T PF12895_consen 1 DQGNYENAIKYYEKLLELDPT--NP--NSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSN------PDIHYLLARCLL 69 (84)
T ss_dssp HTT-HHHHHHHHHHHHHHHCG--TH--HHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCH------HHHHHHHHHHHH
T ss_pred CCccHHHHHHHHHHHHHHCCC--Ch--hHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCC------HHHHHHHHHHHH
Confidence 368999999999999998754 22 4556777999999 7999999999999 3333321 245556799999
Q ss_pred HhccHHHHHHHHHHH
Q 026767 100 KLEKYADAATFLLRW 114 (233)
Q Consensus 100 ~~g~~~~A~~~~~~a 114 (233)
++|+|++|+.+|+++
T Consensus 70 ~l~~y~eAi~~l~~~ 84 (84)
T PF12895_consen 70 KLGKYEEAIKALEKA 84 (84)
T ss_dssp HTT-HHHHHHHHHHH
T ss_pred HhCCHHHHHHHHhcC
Confidence 999999999999875
No 96
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.51 E-value=2.6e-06 Score=73.26 Aligned_cols=135 Identities=16% Similarity=0.113 Sum_probs=105.9
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHcCC---chHHH---HHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCChHHHH
Q 026767 16 AALAKELHNWREVADFYRKASELYNECGR---SQPAS---DALAKAARALE-DAVPEDAIQLYTDACIMLEEDDKEQMAF 88 (233)
Q Consensus 16 g~~~~~~g~~~eA~~~~~~A~~l~~~~g~---~~~~a---~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~~~~~~ 88 (233)
|.++.-.++.+.|+.+|++++.+-...-+ ..... ..+.+-|.-.. .|.+..|.+.|..||.+-+..-+ ..+
T Consensus 210 g~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~--~na 287 (486)
T KOG0550|consen 210 GLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKK--TNA 287 (486)
T ss_pred ccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccc--hhH
Confidence 33444567889999999999998543322 22222 23344465555 79999999999999999888443 456
Q ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHccCcchHHHhHHHHHHHHHhhCCHHHHHHHHHHhhcCC
Q 026767 89 DLYRAATNVYIKLEKYADAATFLLRWGLAADKCNATNSQCKAYLSAIIVYLYANDFKQAEKCYNDCSQVD 158 (233)
Q Consensus 89 ~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~gd~~~A~~~~~~al~~~ 158 (233)
.+|.|.+.+.+++|+..+|+.-+..++.+ ...-.++|..-|.||+.++++++|.+.|+++++..
T Consensus 288 klY~nra~v~~rLgrl~eaisdc~~Al~i------D~syikall~ra~c~l~le~~e~AV~d~~~a~q~~ 351 (486)
T KOG0550|consen 288 KLYGNRALVNIRLGRLREAISDCNEALKI------DSSYIKALLRRANCHLALEKWEEAVEDYEKAMQLE 351 (486)
T ss_pred HHHHHhHhhhcccCCchhhhhhhhhhhhc------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 89999999999999999999999999976 33445788999999999999999999999998543
No 97
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=98.50 E-value=3.7e-06 Score=78.70 Aligned_cols=173 Identities=11% Similarity=0.049 Sum_probs=113.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCChHHHH
Q 026767 10 KHMESAAALAKELHNWREVADFYRKASELYNECGRSQPASDALAKAARALE-DAVPEDAIQLYTDACIMLEEDDKEQMAF 88 (233)
Q Consensus 10 ~~~~~~g~~~~~~g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~~~~~~ 88 (233)
-++..+++.|...|+|..+...+.-|+..- -.....+..+..+|..|. +|++++|-.||.+|+...+.. -.
T Consensus 271 ~~l~~LAn~fyfK~dy~~v~~la~~ai~~t---~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~-----~~ 342 (1018)
T KOG2002|consen 271 VALNHLANHFYFKKDYERVWHLAEHAIKNT---ENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDN-----FV 342 (1018)
T ss_pred HHHHHHHHHHhhcccHHHHHHHHHHHHHhh---hhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCC-----cc
Confidence 456777888888899999988888877654 233456788999999999 899999999999998776643 12
Q ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHc--------------------------------cCcchHHHhHHHHHH
Q 026767 89 DLYRAATNVYIKLEKYADAATFLLRWGLAADKC--------------------------------NATNSQCKAYLSAII 136 (233)
Q Consensus 89 ~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~--------------------------------~~~~~~a~~~~~lg~ 136 (233)
..+..+|.+++..|++..|..+|++.++..... ...+....++..++.
T Consensus 343 l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laq 422 (1018)
T KOG2002|consen 343 LPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQ 422 (1018)
T ss_pred ccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHH
Confidence 467889999999999999999999887532110 011112223334444
Q ss_pred HHHhhCCHHHHHHHHHHhhcCCC-CCCchHHHHHHHHHHHH-hcCCHHHHHHHHhhc
Q 026767 137 VYLYANDFKQAEKCYNDCSQVDA-FLRSDQNRCATKLISAY-TEGDVEEIKRVAQSS 191 (233)
Q Consensus 137 ~~~~~gd~~~A~~~~~~al~~~~-~~~~~e~~~l~~L~~a~-~~gd~~~a~~~~~~~ 191 (233)
++.. +|.-.++.+|..|+.+-. ....-.-++|+++|..+ ..|+++.|..++.++
T Consensus 423 l~e~-~d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A 478 (1018)
T KOG2002|consen 423 LLEQ-TDPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSA 478 (1018)
T ss_pred HHHh-cChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHH
Confidence 4332 344444555555552221 12224455666666655 666666666666666
No 98
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.50 E-value=1.9e-05 Score=69.79 Aligned_cols=173 Identities=18% Similarity=0.164 Sum_probs=100.6
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCchHHHH----------------------------------HHH
Q 026767 8 AAKHMESAAALAKELHNWREVADFYRKASELYNECGRSQPASD----------------------------------ALA 53 (233)
Q Consensus 8 ~a~~~~~~g~~~~~~g~~~eA~~~~~~A~~l~~~~g~~~~~a~----------------------------------~l~ 53 (233)
.+....++|+......++..|+++|.+++++....++....+. ++.
T Consensus 223 ~a~~ek~lgnaaykkk~f~~a~q~y~~a~el~~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~ 302 (539)
T KOG0548|consen 223 KAHKEKELGNAAYKKKDFETAIQHYAKALELATDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALA 302 (539)
T ss_pred hhhHHHHHHHHHHHhhhHHHHHHHHHHHHhHhhhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHH
Confidence 4666778888777788888888888888888755544443333 333
Q ss_pred HHHHHhh-hCCHHHHHHHHHHHHHHHHhcCCh--------------------HHHHHHHHHHHHHHHHhccHHHHHHHHH
Q 026767 54 KAARALE-DAVPEDAIQLYTDACIMLEEDDKE--------------------QMAFDLYRAATNVYIKLEKYADAATFLL 112 (233)
Q Consensus 54 ~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~~--------------------~~~~~~l~~lg~~~~~~g~~~~A~~~~~ 112 (233)
.+|..|. .++++.++.+|.+++.-++..+.. ...+.-...-|.-+.+.|+|..|+.+|.
T Consensus 303 r~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~Yt 382 (539)
T KOG0548|consen 303 RLGNAYTKREDYEGAIKYYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYT 382 (539)
T ss_pred HhhhhhhhHHhHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHH
Confidence 3444455 466666666666666666552210 0011112233445566666666666666
Q ss_pred HHHHHHhHccCcchHHHhHHHHHHHHHhhCCHHHHHHHHHHhhcC-CCCCCchHHHHHHHHHHHH-hcCCHHHHHHHHhh
Q 026767 113 RWGLAADKCNATNSQCKAYLSAIIVYLYANDFKQAEKCYNDCSQV-DAFLRSDQNRCATKLISAY-TEGDVEEIKRVAQS 190 (233)
Q Consensus 113 ~al~~~~~~~~~~~~a~~~~~lg~~~~~~gd~~~A~~~~~~al~~-~~~~~~~e~~~l~~L~~a~-~~gd~~~a~~~~~~ 190 (233)
+++.. .+.-++.|.|.+.||+.+|.+..|++..+.++.+ +.| ....+.. |.++ ...+++.|.+++++
T Consensus 383 eAIkr------~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~----~kgy~RK-g~al~~mk~ydkAleay~e 451 (539)
T KOG0548|consen 383 EAIKR------DPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNF----IKAYLRK-GAALRAMKEYDKALEAYQE 451 (539)
T ss_pred HHHhc------CCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchH----HHHHHHH-HHHHHHHHHHHHHHHHHHH
Confidence 66542 2445566677777777777777777776666643 222 1112222 3333 45667777777776
Q ss_pred c
Q 026767 191 S 191 (233)
Q Consensus 191 ~ 191 (233)
+
T Consensus 452 a 452 (539)
T KOG0548|consen 452 A 452 (539)
T ss_pred H
Confidence 6
No 99
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.49 E-value=7.5e-06 Score=66.51 Aligned_cols=162 Identities=19% Similarity=0.218 Sum_probs=117.0
Q ss_pred HHHHHHHcCCchHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHH
Q 026767 35 ASELYNECGRSQPASDALAKAARALE-DAVPEDAIQLYTDACIMLEEDDKEQMAFDLYRAATNVYIKLEKYADAATFLLR 113 (233)
Q Consensus 35 A~~l~~~~g~~~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~~~~~~~~l~~lg~~~~~~g~~~~A~~~~~~ 113 (233)
+..++.......+-..+ .+.+..+. .|+-+.++.+..+++..+.... ..+.-+|......|+|..|+..+++
T Consensus 53 ~~al~~~~~~~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~------~ll~~~gk~~~~~g~~~~A~~~~rk 125 (257)
T COG5010 53 AAALGAAVLRNPEDLSI-AKLATALYLRGDADSSLAVLQKSAIAYPKDR------ELLAAQGKNQIRNGNFGEAVSVLRK 125 (257)
T ss_pred HHHHHHHHhcCcchHHH-HHHHHHHHhcccccchHHHHhhhhccCcccH------HHHHHHHHHHHHhcchHHHHHHHHH
Confidence 33444444444444444 66666666 6888888887777665555422 3555699999999999999999999
Q ss_pred HHHHHhHccCcchHHHhHHHHHHHHHhhCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHH-hcCCHHHHHHHHhhcc
Q 026767 114 WGLAADKCNATNSQCKAYLSAIIVYLYANDFKQAEKCYNDCSQVDAFLRSDQNRCATKLISAY-TEGDVEEIKRVAQSSA 192 (233)
Q Consensus 114 al~~~~~~~~~~~~a~~~~~lg~~~~~~gd~~~A~~~~~~al~~~~~~~~~e~~~l~~L~~a~-~~gd~~~a~~~~~~~~ 192 (233)
+..+ .+..+..+..+|.+|...|+++.|+..|.+++.+.. .+..++.+|+-.+ -.||.+.|+..+.++.
T Consensus 126 A~~l------~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~----~~p~~~nNlgms~~L~gd~~~A~~lll~a~ 195 (257)
T COG5010 126 AARL------APTDWEAWNLLGAALDQLGRFDEARRAYRQALELAP----NEPSIANNLGMSLLLRGDLEDAETLLLPAY 195 (257)
T ss_pred Hhcc------CCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhcc----CCchhhhhHHHHHHHcCCHHHHHHHHHHHH
Confidence 9865 455677899999999999999999999999997652 3567888998877 7999999999999883
Q ss_pred cccc-hH-HHHHHhccC-CCCchh
Q 026767 193 ISNL-DH-VIIKLARKL-PTGDVS 213 (233)
Q Consensus 193 ~~~l-d~-~~~~l~~~l-~~~~~~ 213 (233)
...- |. -...++... ..|++.
T Consensus 196 l~~~ad~~v~~NLAl~~~~~g~~~ 219 (257)
T COG5010 196 LSPAADSRVRQNLALVVGLQGDFR 219 (257)
T ss_pred hCCCCchHHHHHHHHHHhhcCChH
Confidence 2222 22 234444433 345554
No 100
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=98.49 E-value=3.1e-05 Score=64.89 Aligned_cols=142 Identities=11% Similarity=0.001 Sum_probs=113.8
Q ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCC
Q 026767 5 PWDAAKHMESAAALAKELHNWREVADFYRKASELYNECGRSQPASDALAKAARALE-DAVPEDAIQLYTDACIMLEEDDK 83 (233)
Q Consensus 5 ~~~~a~~~~~~g~~~~~~g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~ 83 (233)
+.-+-.++..+-++|....+|.+|++..++-..+-.+..+ -..|..+-.++..+. ..+.+.|+.++.+|++-.+..-
T Consensus 137 ~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~-~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cv- 214 (389)
T COG2956 137 GEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYR-VEIAQFYCELAQQALASSDVDRARELLKKALQADKKCV- 214 (389)
T ss_pred hhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccch-hHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccce-
Confidence 3345567788888888888888888887776666443333 368888999999999 7999999999999997766432
Q ss_pred hHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHccCcchHHHhHHHHHHHHHhhCCHHHHHHHHHHhhcCC
Q 026767 84 EQMAFDLYRAATNVYIKLEKYADAATFLLRWGLAADKCNATNSQCKAYLSAIIVYLYANDFKQAEKCYNDCSQVD 158 (233)
Q Consensus 84 ~~~~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~gd~~~A~~~~~~al~~~ 158 (233)
.+-..+|.+....|+|.+|++.++++++ .++-....+...+-.||..+|+..+.+..+.++.+..
T Consensus 215 -----RAsi~lG~v~~~~g~y~~AV~~~e~v~e-----Qn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~ 279 (389)
T COG2956 215 -----RASIILGRVELAKGDYQKAVEALERVLE-----QNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETN 279 (389)
T ss_pred -----ehhhhhhHHHHhccchHHHHHHHHHHHH-----hChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcc
Confidence 3445689999999999999999998885 2455667778899999999999999999999998554
No 101
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.49 E-value=4.9e-06 Score=72.96 Aligned_cols=164 Identities=13% Similarity=0.137 Sum_probs=102.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCChHHHHH
Q 026767 11 HMESAAALAKELHNWREVADFYRKASELYNECGRSQPASDALAKAARALE-DAVPEDAIQLYTDACIMLEEDDKEQMAFD 89 (233)
Q Consensus 11 ~~~~~g~~~~~~g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~~~~~~~ 89 (233)
.|.+-|.++.-++++++|+.-|++|..+- ..-+-.+..++-..+ ++.++++...|+.+..-|+.. .+
T Consensus 396 vYyHRgQm~flL~q~e~A~aDF~Kai~L~------pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkFP~~------~E 463 (606)
T KOG0547|consen 396 VYYHRGQMRFLLQQYEEAIADFQKAISLD------PENAYAYIQLCCALYRQHKIAESMKTFEEAKKKFPNC------PE 463 (606)
T ss_pred hhHhHHHHHHHHHHHHHHHHHHHHHhhcC------hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC------ch
Confidence 34455555555555566666666555552 133444555555555 566666666666666666653 36
Q ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHhHccCcchHHHhH-HHHHHHHHhhCCHHHHHHHHHHhhcCCCCCCchHHH-
Q 026767 90 LYRAATNVYIKLEKYADAATFLLRWGLAADKCNATNSQCKAY-LSAIIVYLYANDFKQAEKCYNDCSQVDAFLRSDQNR- 167 (233)
Q Consensus 90 ~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~-~~lg~~~~~~gd~~~A~~~~~~al~~~~~~~~~e~~- 167 (233)
+++-.|.++..++++++|++.|..++++-.........+..+ .....+....+|+.+|.+.+++++.+.. +|+
T Consensus 464 vy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~qwk~d~~~a~~Ll~KA~e~Dp-----kce~ 538 (606)
T KOG0547|consen 464 VYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQWKEDINQAENLLRKAIELDP-----KCEQ 538 (606)
T ss_pred HHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhhhchhhhHHHHHHHHHHHHccCc-----hHHH
Confidence 788888888889999999999998887743322222122222 2333344466888889888888885431 222
Q ss_pred HHHHHHHHH-hcCCHHHHHHHHhhc
Q 026767 168 CATKLISAY-TEGDVEEIKRVAQSS 191 (233)
Q Consensus 168 ~l~~L~~a~-~~gd~~~a~~~~~~~ 191 (233)
+...|+..- ..|+.++|.+..+.+
T Consensus 539 A~~tlaq~~lQ~~~i~eAielFEks 563 (606)
T KOG0547|consen 539 AYETLAQFELQRGKIDEAIELFEKS 563 (606)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 445566654 788999999888887
No 102
>PRK14574 hmsH outer membrane protein; Provisional
Probab=98.45 E-value=1.3e-05 Score=76.32 Aligned_cols=158 Identities=8% Similarity=-0.024 Sum_probs=105.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCChHHHHH
Q 026767 11 HMESAAALAKELHNWREVADFYRKASELYNECGRSQPASDALAKAARALE-DAVPEDAIQLYTDACIMLEEDDKEQMAFD 89 (233)
Q Consensus 11 ~~~~~g~~~~~~g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~~~~~~~ 89 (233)
....-+.+..+.|++++|++.+++++... +.....++ .+..++. .|+.++|+.++++++ .+ ... ...
T Consensus 36 ~~y~~aii~~r~Gd~~~Al~~L~qaL~~~-----P~~~~av~-dll~l~~~~G~~~~A~~~~eka~--~p-~n~---~~~ 103 (822)
T PRK14574 36 TQYDSLIIRARAGDTAPVLDYLQEESKAG-----PLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQ--SS-MNI---SSR 103 (822)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHhhC-----ccchhhHH-HHHHHHHHcCCcHHHHHHHHHhc--cC-CCC---CHH
Confidence 34445566667999999999999998875 33222222 6666666 699999999999998 11 111 123
Q ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHhHccCcchHHHhHHHHHHHHHhhCCHHHHHHHHHHhhcCCCCCCchHHHHH
Q 026767 90 LYRAATNVYIKLEKYADAATFLLRWGLAADKCNATNSQCKAYLSAIIVYLYANDFKQAEKCYNDCSQVDAFLRSDQNRCA 169 (233)
Q Consensus 90 ~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~gd~~~A~~~~~~al~~~~~~~~~e~~~l 169 (233)
.+..+|.++...|+|++|+++|+++++.. +....++..++.++...+++++|++.++++...... ....
T Consensus 104 ~llalA~ly~~~gdyd~Aiely~kaL~~d------P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~-----~~~~ 172 (822)
T PRK14574 104 GLASAARAYRNEKRWDQALALWQSSLKKD------PTNPDLISGMIMTQADAGRGGVVLKQATELAERDPT-----VQNY 172 (822)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhC------CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcc-----hHHH
Confidence 55566889999999999999999998652 222455667788999999999999999998743221 1111
Q ss_pred HHHHHHH-hcCCHHHHHHHHhhc
Q 026767 170 TKLISAY-TEGDVEEIKRVAQSS 191 (233)
Q Consensus 170 ~~L~~a~-~~gd~~~a~~~~~~~ 191 (233)
..++..+ ..++...|.+.+++.
T Consensus 173 l~layL~~~~~~~~~AL~~~ekl 195 (822)
T PRK14574 173 MTLSYLNRATDRNYDALQASSEA 195 (822)
T ss_pred HHHHHHHHhcchHHHHHHHHHHH
Confidence 1222222 234554466666666
No 103
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=98.41 E-value=7.1e-06 Score=68.17 Aligned_cols=102 Identities=11% Similarity=0.012 Sum_probs=73.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCChHHHHH
Q 026767 11 HMESAAALAKELHNWREVADFYRKASELYNECGRSQPASDALAKAARALE-DAVPEDAIQLYTDACIMLEEDDKEQMAFD 89 (233)
Q Consensus 11 ~~~~~g~~~~~~g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~~~~~~~ 89 (233)
.|..+-..+...|++++|+..|++.+..|-.. .-...++..+|.+|. .|++++|+.+|++.+..|+..... ..
T Consensus 145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s---~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~---~d 218 (263)
T PRK10803 145 DYNAAIALVQDKSRQDDAIVAFQNFVKKYPDS---TYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKA---AD 218 (263)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCC---cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcch---hH
Confidence 34444444455688888888888888877432 234566778888888 788888888888888888765433 35
Q ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHH
Q 026767 90 LYRAATNVYIKLEKYADAATFLLRWGLAA 118 (233)
Q Consensus 90 ~l~~lg~~~~~~g~~~~A~~~~~~al~~~ 118 (233)
++..+|.++..+|++++|...|++.++.+
T Consensus 219 Al~klg~~~~~~g~~~~A~~~~~~vi~~y 247 (263)
T PRK10803 219 AMFKVGVIMQDKGDTAKAKAVYQQVIKKY 247 (263)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 67788888888888888888888877654
No 104
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=98.37 E-value=0.00017 Score=63.56 Aligned_cols=194 Identities=11% Similarity=0.063 Sum_probs=125.4
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCChHH
Q 026767 8 AAKHMESAAALAKELHNWREVADFYRKASELYNECGRSQPASDALAKAARALE-DAVPEDAIQLYTDACIMLEEDDKEQM 86 (233)
Q Consensus 8 ~a~~~~~~g~~~~~~g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~~~~ 86 (233)
.+.....-|.+....|++++|.....++.+. .+. -...+.-.+.+.. .|+++.|.++|++|.+..++.. .
T Consensus 83 ~~~~~~~~gl~a~~eGd~~~A~k~l~~~~~~----~~~--p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~---~ 153 (398)
T PRK10747 83 RARKQTEQALLKLAEGDYQQVEKLMTRNADH----AEQ--PVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQ---L 153 (398)
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc----ccc--hHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcch---H
Confidence 3444455666666679999888666654432 222 2333455566645 7999999999999986544322 1
Q ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHccCcchHHHhHHHHHHHHHhhCCHHHHHHHHHHhhcCCCCCC----
Q 026767 87 AFDLYRAATNVYIKLEKYADAATFLLRWGLAADKCNATNSQCKAYLSAIIVYLYANDFKQAEKCYNDCSQVDAFLR---- 162 (233)
Q Consensus 87 ~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~gd~~~A~~~~~~al~~~~~~~---- 162 (233)
. .....+.++...|++++|+..+++..+.. +....++..++.+|...||+++|.+.+.+.........
T Consensus 154 ~--~~l~~a~l~l~~g~~~~Al~~l~~~~~~~------P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~ 225 (398)
T PRK10747 154 P--VEITRVRIQLARNENHAARHGVDKLLEVA------PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRA 225 (398)
T ss_pred H--HHHHHHHHHHHCCCHHHHHHHHHHHHhcC------CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHH
Confidence 1 22234889999999999999999887642 33345678889999999999999977766552211100
Q ss_pred ----------------------------------chHHHHHHHHHHHH-hcCCHHHHHHHHhhcccccchHHHHHHhccC
Q 026767 163 ----------------------------------SDQNRCATKLISAY-TEGDVEEIKRVAQSSAISNLDHVIIKLARKL 207 (233)
Q Consensus 163 ----------------------------------~~e~~~l~~L~~a~-~~gd~~~a~~~~~~~~~~~ld~~~~~l~~~l 207 (233)
.....+...++.++ ..|+.++|...+++..-..-++....+-..+
T Consensus 226 ~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~~~~~~l~~l~~~l 305 (398)
T PRK10747 226 MLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKRQYDERLVLLIPRL 305 (398)
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHhhc
Confidence 00122334456666 6899999999998884355566666666666
Q ss_pred CCCchh-hhhhh
Q 026767 208 PTGDVS-ALKKA 218 (233)
Q Consensus 208 ~~~~~~-~~~~~ 218 (233)
..++.. .++..
T Consensus 306 ~~~~~~~al~~~ 317 (398)
T PRK10747 306 KTNNPEQLEKVL 317 (398)
T ss_pred cCCChHHHHHHH
Confidence 555533 44444
No 105
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.36 E-value=1.4e-05 Score=70.22 Aligned_cols=163 Identities=11% Similarity=0.092 Sum_probs=132.2
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCChH
Q 026767 7 DAAKHMESAAALAKELHNWREVADFYRKASELYNECGRSQPASDALAKAARALE-DAVPEDAIQLYTDACIMLEEDDKEQ 85 (233)
Q Consensus 7 ~~a~~~~~~g~~~~~~g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~~~ 85 (233)
-.|.++.--|..+...|++-.|.+-+++++.+.....++ |..+|.+|. ..+.++-...|.+|..+-++..
T Consensus 324 ~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~l~~~~~~l------yI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~--- 394 (606)
T KOG0547|consen 324 YMAEALLLRGTFHFLKGDSLGAQEDFDAAIKLDPAFNSL------YIKRAAAYADENQSEKMWKDFNKAEDLDPENP--- 394 (606)
T ss_pred HHHHHHHHhhhhhhhcCCchhhhhhHHHHHhcCcccchH------HHHHHHHHhhhhccHHHHHHHHHHHhcCCCCC---
Confidence 457888888999999999999999999999998776665 888999999 7999999999999999888754
Q ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHccCcchHHHhHHHHHHHHHhhCCHHHHHHHHHHhhcCCCCCCchH
Q 026767 86 MAFDLYRAATNVYIKLEKYADAATFLLRWGLAADKCNATNSQCKAYLSAIIVYLYANDFKQAEKCYNDCSQVDAFLRSDQ 165 (233)
Q Consensus 86 ~~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~gd~~~A~~~~~~al~~~~~~~~~e 165 (233)
.++..-|.++.-+++|++|+.-|++++.+ .+..+..|..++.+..+++.+.++...|+++. ..|....|
T Consensus 395 ---dvYyHRgQm~flL~q~e~A~aDF~Kai~L------~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~k--kkFP~~~E 463 (606)
T KOG0547|consen 395 ---DVYYHRGQMRFLLQQYEEAIADFQKAISL------DPENAYAYIQLCCALYRQHKIAESMKTFEEAK--KKFPNCPE 463 (606)
T ss_pred ---chhHhHHHHHHHHHHHHHHHHHHHHHhhc------ChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH--HhCCCCch
Confidence 47888899999999999999999999976 45556778889999999999999999999986 22222233
Q ss_pred HHHHHHHHHHH-hcCCHHHHHHHHhhc
Q 026767 166 NRCATKLISAY-TEGDVEEIKRVAQSS 191 (233)
Q Consensus 166 ~~~l~~L~~a~-~~gd~~~a~~~~~~~ 191 (233)
+-.-.++++ .+++++.|.+....+
T Consensus 464 --vy~~fAeiLtDqqqFd~A~k~YD~a 488 (606)
T KOG0547|consen 464 --VYNLFAEILTDQQQFDKAVKQYDKA 488 (606)
T ss_pred --HHHHHHHHHhhHHhHHHHHHHHHHH
Confidence 333445556 678777777776666
No 106
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=98.36 E-value=3.3e-05 Score=68.32 Aligned_cols=58 Identities=14% Similarity=0.158 Sum_probs=38.3
Q ss_pred HhHHHHHHHHHhhCCHHHHHHHHHH--hhcCCCCCCchHHHHHHHHHHHH-hcCCHHHHHHHHhhc
Q 026767 129 KAYLSAIIVYLYANDFKQAEKCYND--CSQVDAFLRSDQNRCATKLISAY-TEGDVEEIKRVAQSS 191 (233)
Q Consensus 129 ~~~~~lg~~~~~~gd~~~A~~~~~~--al~~~~~~~~~e~~~l~~L~~a~-~~gd~~~a~~~~~~~ 191 (233)
..+..+|.++...|++++|.++|++ ++... +. ......|++.+ ..|+.++|.++|+++
T Consensus 336 ~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~---p~--~~~~~~La~ll~~~g~~~~A~~~~~~~ 396 (409)
T TIGR00540 336 CINRALGQLLMKHGEFIEAADAFKNVAACKEQ---LD--ANDLAMAADAFDQAGDKAEAAAMRQDS 396 (409)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHhHHhhcC---CC--HHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4557778888888888888888884 33221 11 12234777777 678888888877765
No 107
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=98.36 E-value=5.5e-05 Score=66.66 Aligned_cols=185 Identities=15% Similarity=0.061 Sum_probs=125.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCChHHHHH
Q 026767 11 HMESAAALAKELHNWREVADFYRKASELYNECGRSQPASDALAKAARALE-DAVPEDAIQLYTDACIMLEEDDKEQMAFD 89 (233)
Q Consensus 11 ~~~~~g~~~~~~g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~~~~~~~ 89 (233)
.+..++.+....|++++|.+++.+|.+.. .+.. .+ .....+.++. .|++++|++.+++..+..+... .
T Consensus 120 ~~llaA~aA~~~g~~~~A~~~l~~A~~~~---~~~~-~~-~~l~~a~l~l~~g~~~~Al~~l~~~~~~~P~~~------~ 188 (398)
T PRK10747 120 NYLLAAEAAQQRGDEARANQHLERAAELA---DNDQ-LP-VEITRVRIQLARNENHAARHGVDKLLEVAPRHP------E 188 (398)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhcC---Ccch-HH-HHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCH------H
Confidence 35555666577999999999999997543 2211 12 2223377777 7999999999999988776532 4
Q ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHh-------------------H----------------c-cCcchHHHhHHH
Q 026767 90 LYRAATNVYIKLEKYADAATFLLRWGLAAD-------------------K----------------C-NATNSQCKAYLS 133 (233)
Q Consensus 90 ~l~~lg~~~~~~g~~~~A~~~~~~al~~~~-------------------~----------------~-~~~~~~a~~~~~ 133 (233)
++.-++.+|...|++++|++.+.+...... . . ...+........
T Consensus 189 al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~ 268 (398)
T PRK10747 189 VLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVA 268 (398)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHH
Confidence 778889999999999999977776552100 0 0 011123345677
Q ss_pred HHHHHHhhCCHHHHHHHHHHhhcCCC----------C--C---------------CchHHHHHHHHHHHH-hcCCHHHHH
Q 026767 134 AIIVYLYANDFKQAEKCYNDCSQVDA----------F--L---------------RSDQNRCATKLISAY-TEGDVEEIK 185 (233)
Q Consensus 134 lg~~~~~~gd~~~A~~~~~~al~~~~----------~--~---------------~~~e~~~l~~L~~a~-~~gd~~~a~ 185 (233)
++..+...|+..+|.+.+++++..+. . . .+.....+..+|+.+ ..+++++|+
T Consensus 269 ~A~~l~~~g~~~~A~~~L~~~l~~~~~~~l~~l~~~l~~~~~~~al~~~e~~lk~~P~~~~l~l~lgrl~~~~~~~~~A~ 348 (398)
T PRK10747 269 MAEHLIECDDHDTAQQIILDGLKRQYDERLVLLIPRLKTNNPEQLEKVLRQQIKQHGDTPLLWSTLGQLLMKHGEWQEAS 348 (398)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHhhccCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHH
Confidence 88999999999999999999873211 0 0 123344666778877 889999999
Q ss_pred HHHhhcccccchH-HHHHHhcc
Q 026767 186 RVAQSSAISNLDH-VIIKLARK 206 (233)
Q Consensus 186 ~~~~~~~~~~ld~-~~~~l~~~ 206 (233)
++++.++-...+. ....++..
T Consensus 349 ~~le~al~~~P~~~~~~~La~~ 370 (398)
T PRK10747 349 LAFRAALKQRPDAYDYAWLADA 370 (398)
T ss_pred HHHHHHHhcCCCHHHHHHHHHH
Confidence 9999994333333 33555543
No 108
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=98.34 E-value=2.1e-05 Score=57.67 Aligned_cols=102 Identities=17% Similarity=0.127 Sum_probs=55.7
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCChHH
Q 026767 8 AAKHMESAAALAKELHNWREVADFYRKASELYNECGRSQPASDALAKAARALE-DAVPEDAIQLYTDACIMLEEDDKEQM 86 (233)
Q Consensus 8 ~a~~~~~~g~~~~~~g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~~~~ 86 (233)
+.+.++.=|.+..+.|+.+.|++.|.+|+.+.- ..+.+|+|-+..+. +|+.++|+.-+.+|+++.-..+ +.
T Consensus 42 ~S~~LEl~~valaE~g~Ld~AlE~F~qal~l~P------~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~t--rt 113 (175)
T KOG4555|consen 42 ASRELELKAIALAEAGDLDGALELFGQALCLAP------ERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQT--RT 113 (175)
T ss_pred HHHHHHHHHHHHHhccchHHHHHHHHHHHHhcc------cchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccc--hH
Confidence 344455555555556666666666666655541 23455556666655 5666666666666665554332 23
Q ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Q 026767 87 AFDLYRAATNVYIKLEKYADAATFLLRWGLA 117 (233)
Q Consensus 87 ~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~ 117 (233)
+..++..-|.+|..+|+-+.|..-|+.+..+
T Consensus 114 acqa~vQRg~lyRl~g~dd~AR~DFe~AA~L 144 (175)
T KOG4555|consen 114 ACQAFVQRGLLYRLLGNDDAARADFEAAAQL 144 (175)
T ss_pred HHHHHHHHHHHHHHhCchHHHHHhHHHHHHh
Confidence 3344555555555566666666555555543
No 109
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=98.33 E-value=1.7e-05 Score=65.92 Aligned_cols=100 Identities=15% Similarity=0.091 Sum_probs=83.3
Q ss_pred HHHHHHHHHh-h-hCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHccCcchH
Q 026767 50 DALAKAARAL-E-DAVPEDAIQLYTDACIMLEEDDKEQMAFDLYRAATNVYIKLEKYADAATFLLRWGLAADKCNATNSQ 127 (233)
Q Consensus 50 ~~l~~lg~~~-~-~g~~~~A~~~~~~Al~~~~~~g~~~~~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 127 (233)
....+.|..+ . .|++++|+..|++.+..++.... ...++..+|.+|...|+|++|+..|++++..+. +....
T Consensus 143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~---a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP---~s~~~ 216 (263)
T PRK10803 143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTY---QPNANYWLGQLNYNKGKKDDAAYYFASVVKNYP---KSPKA 216 (263)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcc---hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC---CCcch
Confidence 4555565544 3 69999999999999999987643 335789999999999999999999999997653 34556
Q ss_pred HHhHHHHHHHHHhhCCHHHHHHHHHHhh
Q 026767 128 CKAYLSAIIVYLYANDFKQAEKCYNDCS 155 (233)
Q Consensus 128 a~~~~~lg~~~~~~gd~~~A~~~~~~al 155 (233)
..+++.+|.++..+|++.+|...|++.+
T Consensus 217 ~dAl~klg~~~~~~g~~~~A~~~~~~vi 244 (263)
T PRK10803 217 ADAMFKVGVIMQDKGDTAKAKAVYQQVI 244 (263)
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 6788999999999999999999999987
No 110
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=98.31 E-value=7.5e-05 Score=69.67 Aligned_cols=166 Identities=13% Similarity=0.106 Sum_probs=125.5
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCChHH
Q 026767 8 AAKHMESAAALAKELHNWREVADFYRKASELYNECGRSQPASDALAKAARALE-DAVPEDAIQLYTDACIMLEEDDKEQM 86 (233)
Q Consensus 8 ~a~~~~~~g~~~~~~g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~~~~ 86 (233)
....+...|+...-.|++++|...+.+.+..- .....+|.-+|.||+ +|+.++++.....|.-+-+..-
T Consensus 138 ~l~~ll~eAN~lfarg~~eeA~~i~~EvIkqd------p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~---- 207 (895)
T KOG2076|consen 138 ELRQLLGEANNLFARGDLEEAEEILMEVIKQD------PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDY---- 207 (895)
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC------ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCh----
Confidence 34556666676666799999999999987763 345677999999999 7999999999998887766543
Q ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHccCcchHHHhHHHHHHHHHhhCCHHHHHHHHHHhhcCCCCCCchHH
Q 026767 87 AFDLYRAATNVYIKLEKYADAATFLLRWGLAADKCNATNSQCKAYLSAIIVYLYANDFKQAEKCYNDCSQVDAFLRSDQN 166 (233)
Q Consensus 87 ~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~gd~~~A~~~~~~al~~~~~~~~~e~ 166 (233)
.-+..++....++|.+++|+-+|.+|+.. .+..-..+..-..+|..+|++..|...|.+.+......+....
T Consensus 208 --e~W~~ladls~~~~~i~qA~~cy~rAI~~------~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~ 279 (895)
T KOG2076|consen 208 --ELWKRLADLSEQLGNINQARYCYSRAIQA------NPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERI 279 (895)
T ss_pred --HHHHHHHHHHHhcccHHHHHHHHHHHHhc------CCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHH
Confidence 35678999999999999999999999964 2233455678889999999999999999998744332222222
Q ss_pred HHHHH-HHHHH-hcCCHHHHHHHHhhc
Q 026767 167 RCATK-LISAY-TEGDVEEIKRVAQSS 191 (233)
Q Consensus 167 ~~l~~-L~~a~-~~gd~~~a~~~~~~~ 191 (233)
..+.. .+..+ ..++.+.|...+..+
T Consensus 280 ~d~i~~~~~~~~~~~~~e~a~~~le~~ 306 (895)
T KOG2076|consen 280 EDLIRRVAHYFITHNERERAAKALEGA 306 (895)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 22222 24445 677788888888887
No 111
>PRK14574 hmsH outer membrane protein; Provisional
Probab=98.31 E-value=3.3e-05 Score=73.69 Aligned_cols=162 Identities=14% Similarity=0.091 Sum_probs=118.7
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCChHHHHHHHH
Q 026767 14 SAAALAKELHNWREVADFYRKASELYNECGRSQPASDALAKAARALE-DAVPEDAIQLYTDACIMLEEDDKEQMAFDLYR 92 (233)
Q Consensus 14 ~~g~~~~~~g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~~~~~~~~l~ 92 (233)
.+..++...|+.++|+.++++++ .........+..+|.++. .|++++|++.|+++++..+... .++.
T Consensus 73 dll~l~~~~G~~~~A~~~~eka~------~p~n~~~~~llalA~ly~~~gdyd~Aiely~kaL~~dP~n~------~~l~ 140 (822)
T PRK14574 73 DWLQIAGWAGRDQEVIDVYERYQ------SSMNISSRGLASAARAYRNEKRWDQALALWQSSLKKDPTNP------DLIS 140 (822)
T ss_pred HHHHHHHHcCCcHHHHHHHHHhc------cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH------HHHH
Confidence 55677777899999999999998 111234455666788999 7999999999999999888652 3556
Q ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHhHccCcchHHHhHHHHHHHHHhhCCHHHHHHHHHHhhcCCCCCCchHHHHHHHH
Q 026767 93 AATNVYIKLEKYADAATFLLRWGLAADKCNATNSQCKAYLSAIIVYLYANDFKQAEKCYNDCSQVDAFLRSDQNRCATKL 172 (233)
Q Consensus 93 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~gd~~~A~~~~~~al~~~~~~~~~e~~~l~~L 172 (233)
.++.++...+++++|++.++++..... . ...+..++.++...+++.+|++.+++++... +....++..+
T Consensus 141 gLa~~y~~~~q~~eAl~~l~~l~~~dp-----~--~~~~l~layL~~~~~~~~~AL~~~ekll~~~----P~n~e~~~~~ 209 (822)
T PRK14574 141 GMIMTQADAGRGGVVLKQATELAERDP-----T--VQNYMTLSYLNRATDRNYDALQASSEAVRLA----PTSEEVLKNH 209 (822)
T ss_pred HHHHHHhhcCCHHHHHHHHHHhcccCc-----c--hHHHHHHHHHHHhcchHHHHHHHHHHHHHhC----CCCHHHHHHH
Confidence 778999999999999999998886421 1 2233444555555778878999999998443 1234566666
Q ss_pred HHHH-hcCCHHHHHHHHhhc--ccccchH
Q 026767 173 ISAY-TEGDVEEIKRVAQSS--AISNLDH 198 (233)
Q Consensus 173 ~~a~-~~gd~~~a~~~~~~~--~~~~ld~ 198 (233)
..+. ..|-...|.+..++. .|+.-+.
T Consensus 210 ~~~l~~~~~~~~a~~l~~~~p~~f~~~~~ 238 (822)
T PRK14574 210 LEILQRNRIVEPALRLAKENPNLVSAEHY 238 (822)
T ss_pred HHHHHHcCCcHHHHHHHHhCccccCHHHH
Confidence 6666 678888888888776 6665553
No 112
>PLN03218 maturation of RBCL 1; Provisional
Probab=98.29 E-value=8.9e-05 Score=72.58 Aligned_cols=94 Identities=9% Similarity=0.072 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHhHccCcchHHHhHHHHHHHHHhhCCHHHHHHHHHHhhcCCCCCCchHHHHH
Q 026767 90 LYRAATNVYIKLEKYADAATFLLRWGLAADKCNATNSQCKAYLSAIIVYLYANDFKQAEKCYNDCSQVDAFLRSDQNRCA 169 (233)
Q Consensus 90 ~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~gd~~~A~~~~~~al~~~~~~~~~e~~~l 169 (233)
+++.+...|.+.|++++|..+|++... .+..+. ..+|+.+...|.+.|++++|.+.|++..... + .......
T Consensus 686 tynsLI~ay~k~G~~eeA~~lf~eM~~----~g~~Pd-vvtyN~LI~gy~k~G~~eeAlelf~eM~~~G-i--~Pd~~Ty 757 (1060)
T PLN03218 686 SYSSLMGACSNAKNWKKALELYEDIKS----IKLRPT-VSTMNALITALCEGNQLPKALEVLSEMKRLG-L--CPNTITY 757 (1060)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHH----cCCCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-C--CCCHHHH
Confidence 344444444444444444444443321 111111 2234555555555555555555555433110 0 0112233
Q ss_pred HHHHHHH-hcCCHHHHHHHHhhc
Q 026767 170 TKLISAY-TEGDVEEIKRVAQSS 191 (233)
Q Consensus 170 ~~L~~a~-~~gd~~~a~~~~~~~ 191 (233)
..|+.++ ..|+.+.|...+.+.
T Consensus 758 ~sLL~a~~k~G~le~A~~l~~~M 780 (1060)
T PLN03218 758 SILLVASERKDDADVGLDLLSQA 780 (1060)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHH
Confidence 4444445 456666666555555
No 113
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=98.29 E-value=6.7e-05 Score=70.75 Aligned_cols=26 Identities=15% Similarity=0.180 Sum_probs=17.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH
Q 026767 11 HMESAAALAKELHNWREVADFYRKAS 36 (233)
Q Consensus 11 ~~~~~g~~~~~~g~~~eA~~~~~~A~ 36 (233)
+|+.+...|.+.|++++|+..|++..
T Consensus 191 t~n~li~~~~~~g~~~~A~~lf~~M~ 216 (697)
T PLN03081 191 SWGTIIGGLVDAGNYREAFALFREMW 216 (697)
T ss_pred eHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 35666666777777777777777653
No 114
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=98.28 E-value=0.00016 Score=68.20 Aligned_cols=95 Identities=13% Similarity=0.097 Sum_probs=60.4
Q ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHhHccCcchHHHhHHHHHHHHHhhCCHHHHHHHHHHhhcCCCCCCchHHHHH
Q 026767 90 LYRAATNVYIKLEKYADAATFLLRWGLAADKCNATNSQCKAYLSAIIVYLYANDFKQAEKCYNDCSQVDAFLRSDQNRCA 169 (233)
Q Consensus 90 ~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~gd~~~A~~~~~~al~~~~~~~~~e~~~l 169 (233)
+++.+...|.+.|+.++|+++|++... .|..+. ..+|..+...+...|+.++|.+.|+.......... .....
T Consensus 393 t~n~lI~~y~~~G~~~~A~~lf~~M~~----~g~~Pd-~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p--~~~~y 465 (697)
T PLN03081 393 SWNALIAGYGNHGRGTKAVEMFERMIA----EGVAPN-HVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKP--RAMHY 465 (697)
T ss_pred eHHHHHHHHHHcCCHHHHHHHHHHHHH----hCCCCC-HHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCC--Cccch
Confidence 566677777777777777777776553 233333 33567777777777888888777777653222211 12234
Q ss_pred HHHHHHH-hcCCHHHHHHHHhhc
Q 026767 170 TKLISAY-TEGDVEEIKRVAQSS 191 (233)
Q Consensus 170 ~~L~~a~-~~gd~~~a~~~~~~~ 191 (233)
.-+++.+ +.|+.++|.+.+++.
T Consensus 466 ~~li~~l~r~G~~~eA~~~~~~~ 488 (697)
T PLN03081 466 ACMIELLGREGLLDEAYAMIRRA 488 (697)
T ss_pred HhHHHHHHhcCCHHHHHHHHHHC
Confidence 4566666 678888888887765
No 115
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=98.27 E-value=8.9e-05 Score=65.57 Aligned_cols=130 Identities=15% Similarity=0.088 Sum_probs=85.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCChHHH
Q 026767 9 AKHMESAAALAKELHNWREVADFYRKASELYNECGRSQPASDALAKAARALE-DAVPEDAIQLYTDACIMLEEDDKEQMA 87 (233)
Q Consensus 9 a~~~~~~g~~~~~~g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~~~~~ 87 (233)
+.....-|.+-...|+++.|.....++.+.. .+ -...+.-.|.+.. +|+++.|.+++.++.+.++..+-
T Consensus 84 ~~~~~~~glla~~~g~~~~A~~~l~~~~~~~---~~---~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l---- 153 (409)
T TIGR00540 84 AQKQTEEALLKLAEGDYAKAEKLIAKNADHA---AE---PVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNI---- 153 (409)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHhhcC---CC---CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCch----
Confidence 4444555666666888888888887766542 11 1233445567666 68888888888888765544321
Q ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHccCcchHHHhHHHHHHHHHhhCCHHHHHHHHHHhh
Q 026767 88 FDLYRAATNVYIKLEKYADAATFLLRWGLAADKCNATNSQCKAYLSAIIVYLYANDFKQAEKCYNDCS 155 (233)
Q Consensus 88 ~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~gd~~~A~~~~~~al 155 (233)
.+....+.++...|++++|...+++..+.. +....++..++.++...||+++|.+.+.+..
T Consensus 154 -~~~~~~a~l~l~~~~~~~Al~~l~~l~~~~------P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~ 214 (409)
T TIGR00540 154 -LVEIARTRILLAQNELHAARHGVDKLLEMA------PRHKEVLKLAEEAYIRSGAWQALDDIIDNMA 214 (409)
T ss_pred -HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC------CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 123334777888888888888888777541 2233567788888888888888877777665
No 116
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=98.24 E-value=3.3e-05 Score=56.70 Aligned_cols=102 Identities=19% Similarity=0.197 Sum_probs=86.5
Q ss_pred HHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHccCcchH
Q 026767 49 SDALAKAARALE-DAVPEDAIQLYTDACIMLEEDDKEQMAFDLYRAATNVYIKLEKYADAATFLLRWGLAADKCNATNSQ 127 (233)
Q Consensus 49 a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~~~~~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 127 (233)
...+..-|.++. -|+.+.|++.|.+|+.+.++. +.+|+|-+..+.-+|+.++|++-+.+++++.- +..+..
T Consensus 43 S~~LEl~~valaE~g~Ld~AlE~F~qal~l~P~r------aSayNNRAQa~RLq~~~e~ALdDLn~AleLag--~~trta 114 (175)
T KOG4555|consen 43 SRELELKAIALAEAGDLDGALELFGQALCLAPER------ASAYNNRAQALRLQGDDEEALDDLNKALELAG--DQTRTA 114 (175)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHHHhcccc------hHhhccHHHHHHHcCChHHHHHHHHHHHHhcC--ccchHH
Confidence 344555677777 699999999999999999763 46899999999999999999999999999853 345666
Q ss_pred HHhHHHHHHHHHhhCCHHHHHHHHHHhhcCC
Q 026767 128 CKAYLSAIIVYLYANDFKQAEKCYNDCSQVD 158 (233)
Q Consensus 128 a~~~~~lg~~~~~~gd~~~A~~~~~~al~~~ 158 (233)
..++..-|.+|..+|+-+.|+.-|+.+..+-
T Consensus 115 cqa~vQRg~lyRl~g~dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 115 CQAFVQRGLLYRLLGNDDAARADFEAAAQLG 145 (175)
T ss_pred HHHHHHHHHHHHHhCchHHHHHhHHHHHHhC
Confidence 7788999999999999999999999987553
No 117
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.23 E-value=9.4e-06 Score=52.31 Aligned_cols=58 Identities=10% Similarity=0.072 Sum_probs=50.4
Q ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHhHccCcchHHHhHHHHHHHHHhhCCHHHHHHHHHHhhc
Q 026767 93 AATNVYIKLEKYADAATFLLRWGLAADKCNATNSQCKAYLSAIIVYLYANDFKQAEKCYNDCSQ 156 (233)
Q Consensus 93 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~gd~~~A~~~~~~al~ 156 (233)
.+|..+...|+|++|+..|++++.. .+....+++.+|.++..+|++++|...|++++.
T Consensus 2 ~~a~~~~~~g~~~~A~~~~~~~l~~------~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~ 59 (65)
T PF13432_consen 2 ALARALYQQGDYDEAIAAFEQALKQ------DPDNPEAWYLLGRILYQQGRYDEALAYYERALE 59 (65)
T ss_dssp HHHHHHHHCTHHHHHHHHHHHHHCC------STTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred hHHHHHHHcCCHHHHHHHHHHHHHH------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 5788999999999999999999853 355677899999999999999999999999873
No 118
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.23 E-value=3.3e-05 Score=66.46 Aligned_cols=139 Identities=10% Similarity=0.027 Sum_probs=102.9
Q ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCc--h-------HHHHHHHHHHHHhh-hCCHHHHHHHHHHH
Q 026767 5 PWDAAKHMESAAALAKELHNWREVADFYRKASELYNECGRS--Q-------PASDALAKAARALE-DAVPEDAIQLYTDA 74 (233)
Q Consensus 5 ~~~~a~~~~~~g~~~~~~g~~~eA~~~~~~A~~l~~~~g~~--~-------~~a~~l~~lg~~~~-~g~~~~A~~~~~~A 74 (233)
...+|.-...-|+.|...|+|..|...|++|+......... . ---.++.|++.++. ..+|.+|+++..++
T Consensus 204 ~l~~A~~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kv 283 (397)
T KOG0543|consen 204 RLEAADRKKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKV 283 (397)
T ss_pred HHHHHHHHHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHH
Confidence 34677888889999999999999999999999987632221 1 11236889999999 79999999999999
Q ss_pred HHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHccCcchHHHhHHHHHHHHHhhCCHHH-HHHHHHH
Q 026767 75 CIMLEEDDKEQMAFDLYRAATNVYIKLEKYADAATFLLRWGLAADKCNATNSQCKAYLSAIIVYLYANDFKQ-AEKCYND 153 (233)
Q Consensus 75 l~~~~~~g~~~~~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~gd~~~-A~~~~~~ 153 (233)
|++-... ..+|.+-|.++..+|+|+.|+..|++++.+- +.+ -.+...|..|..+.-++.. ..+.|..
T Consensus 284 Le~~~~N------~KALyRrG~A~l~~~e~~~A~~df~ka~k~~-----P~N-ka~~~el~~l~~k~~~~~~kekk~y~~ 351 (397)
T KOG0543|consen 284 LELDPNN------VKALYRRGQALLALGEYDLARDDFQKALKLE-----PSN-KAARAELIKLKQKIREYEEKEKKMYAN 351 (397)
T ss_pred HhcCCCc------hhHHHHHHHHHHhhccHHHHHHHHHHHHHhC-----CCc-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9876542 3689999999999999999999999999862 222 2233444455444444433 3556665
Q ss_pred hh
Q 026767 154 CS 155 (233)
Q Consensus 154 al 155 (233)
..
T Consensus 352 mF 353 (397)
T KOG0543|consen 352 MF 353 (397)
T ss_pred Hh
Confidence 54
No 119
>PLN03218 maturation of RBCL 1; Provisional
Probab=98.22 E-value=0.00017 Score=70.64 Aligned_cols=59 Identities=12% Similarity=0.071 Sum_probs=26.9
Q ss_pred hHHHHHHHHHhhCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHH-hcCCHHHHHHHHhhc
Q 026767 130 AYLSAIIVYLYANDFKQAEKCYNDCSQVDAFLRSDQNRCATKLISAY-TEGDVEEIKRVAQSS 191 (233)
Q Consensus 130 ~~~~lg~~~~~~gd~~~A~~~~~~al~~~~~~~~~e~~~l~~L~~a~-~~gd~~~a~~~~~~~ 191 (233)
+|..+...+...|++++|.+.|++..... + .........|+.+| ..|+.+.|...+++-
T Consensus 651 TynsLI~a~~k~G~~eeA~~l~~eM~k~G-~--~pd~~tynsLI~ay~k~G~~eeA~~lf~eM 710 (1060)
T PLN03218 651 FFSALVDVAGHAGDLDKAFEILQDARKQG-I--KLGTVSYSSLMGACSNAKNWKKALELYEDI 710 (1060)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcC-C--CCCHHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 34444444444444444444444443110 0 01123445555555 556666665555543
No 120
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.15 E-value=5.6e-05 Score=72.02 Aligned_cols=134 Identities=13% Similarity=-0.007 Sum_probs=98.1
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCC--
Q 026767 7 DAAKHMESAAALAKELHNWREVADFYRKASELYNECGRSQPASDALAKAARALE-DAVPEDAIQLYTDACIMLEEDDK-- 83 (233)
Q Consensus 7 ~~a~~~~~~g~~~~~~g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~-- 83 (233)
+-..++..+..+|...+++++|++.++.+++.. ......+.-.|.++. .+++..+.-. +++.++....+
T Consensus 29 ~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~------P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~~~ 100 (906)
T PRK14720 29 SKFKELDDLIDAYKSENLTDEAKDICEEHLKEH------KKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQNLKWA 100 (906)
T ss_pred chHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC------CcceehHHHHHHHHHhhcchhhhhhh--hhhhhcccccchh
Confidence 446788999999989999999999999877753 223333444444444 4555444443 44444443321
Q ss_pred -----------hHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHccCcchHHHhHHHHHHHHHhhCCHHHHHHHHH
Q 026767 84 -----------EQMAFDLYRAATNVYIKLEKYADAATFLLRWGLAADKCNATNSQCKAYLSAIIVYLYANDFKQAEKCYN 152 (233)
Q Consensus 84 -----------~~~~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~gd~~~A~~~~~ 152 (233)
....-.++..+|.+|-++|++++|...|++++.+ .+..+.+++++|..+... ++++|+.++.
T Consensus 101 ~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~------D~~n~~aLNn~AY~~ae~-dL~KA~~m~~ 173 (906)
T PRK14720 101 IVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKA------DRDNPEIVKKLATSYEEE-DKEKAITYLK 173 (906)
T ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhc------CcccHHHHHHHHHHHHHh-hHHHHHHHHH
Confidence 1111247889999999999999999999999976 256677899999999999 9999999999
Q ss_pred Hhh
Q 026767 153 DCS 155 (233)
Q Consensus 153 ~al 155 (233)
+|+
T Consensus 174 KAV 176 (906)
T PRK14720 174 KAI 176 (906)
T ss_pred HHH
Confidence 987
No 121
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=98.14 E-value=7.5e-05 Score=52.12 Aligned_cols=76 Identities=8% Similarity=-0.087 Sum_probs=48.8
Q ss_pred hCCHHHHHHHHHHHHHHHHhcCChH---HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHccCcchHHHhHHHHHH
Q 026767 61 DAVPEDAIQLYTDACIMLEEDDKEQ---MAFDLYRAATNVYIKLEKYADAATFLLRWGLAADKCNATNSQCKAYLSAII 136 (233)
Q Consensus 61 ~g~~~~A~~~~~~Al~~~~~~g~~~---~~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~ 136 (233)
.|++.+|++.+.+..++....+... ....++.+++.++...|++++|+..+++++.+.++.++....+.++..+..
T Consensus 11 ~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are~~D~~~l~~al~~~~~ 89 (94)
T PF12862_consen 11 SGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLARENGDRRCLAYALSWLAN 89 (94)
T ss_pred cCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
Confidence 4667777777777776666665433 344456667777777777777777777777777777766666555544433
No 122
>PLN03077 Protein ECB2; Provisional
Probab=98.12 E-value=0.00046 Score=66.66 Aligned_cols=95 Identities=8% Similarity=0.056 Sum_probs=68.0
Q ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHhHccCcchHHHhHHHHHHHHHhhCCHHHHHHHHHHhhcCCCCCCchHHHHH
Q 026767 90 LYRAATNVYIKLEKYADAATFLLRWGLAADKCNATNSQCKAYLSAIIVYLYANDFKQAEKCYNDCSQVDAFLRSDQNRCA 169 (233)
Q Consensus 90 ~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~gd~~~A~~~~~~al~~~~~~~~~e~~~l 169 (233)
+++.+...|.+.|+.++|+++|++... .|..+. ..+|..+...+.+.|+.++|.++|++........+ .....
T Consensus 556 s~n~lI~~~~~~G~~~~A~~lf~~M~~----~g~~Pd-~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P--~~~~y 628 (857)
T PLN03077 556 SWNILLTGYVAHGKGSMAVELFNRMVE----SGVNPD-EVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITP--NLKHY 628 (857)
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHH----cCCCCC-cccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCC--chHHH
Confidence 577777888888888888888887663 233333 33577777788888999999999988753333222 22455
Q ss_pred HHHHHHH-hcCCHHHHHHHHhhc
Q 026767 170 TKLISAY-TEGDVEEIKRVAQSS 191 (233)
Q Consensus 170 ~~L~~a~-~~gd~~~a~~~~~~~ 191 (233)
.-+++++ +.|+.++|.+.+++-
T Consensus 629 ~~lv~~l~r~G~~~eA~~~~~~m 651 (857)
T PLN03077 629 ACVVDLLGRAGKLTEAYNFINKM 651 (857)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHC
Confidence 6777777 789999999988875
No 123
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=98.12 E-value=0.00014 Score=50.76 Aligned_cols=78 Identities=15% Similarity=0.093 Sum_probs=69.5
Q ss_pred HcCCHHHHHHHHHHHHHHHHHcCCch---HHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 026767 21 ELHNWREVADFYRKASELYNECGRSQ---PASDALAKAARALE-DAVPEDAIQLYTDACIMLEEDDKEQMAFDLYRAATN 96 (233)
Q Consensus 21 ~~g~~~eA~~~~~~A~~l~~~~g~~~---~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~~~~~~~~l~~lg~ 96 (233)
..|++.+|++.+.+..+.....+... ....++.++|.++. .|++++|+..+++|+.+.++.+|......++..+..
T Consensus 10 ~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are~~D~~~l~~al~~~~~ 89 (94)
T PF12862_consen 10 RSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLARENGDRRCLAYALSWLAN 89 (94)
T ss_pred HcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
Confidence 37999999999999999998888876 67778889999999 799999999999999999999999988888877766
Q ss_pred HH
Q 026767 97 VY 98 (233)
Q Consensus 97 ~~ 98 (233)
+.
T Consensus 90 l~ 91 (94)
T PF12862_consen 90 LL 91 (94)
T ss_pred Hh
Confidence 54
No 124
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=98.11 E-value=0.0001 Score=68.83 Aligned_cols=135 Identities=14% Similarity=0.122 Sum_probs=106.2
Q ss_pred chHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHccC
Q 026767 45 SQPASDALAKAARALE-DAVPEDAIQLYTDACIMLEEDDKEQMAFDLYRAATNVYIKLEKYADAATFLLRWGLAADKCNA 123 (233)
Q Consensus 45 ~~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~~~~~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~ 123 (233)
+......+.+++..|. .|.|.+|+.++........-.. +.++.++|.+|..+|.|++|+++|++++.+
T Consensus 410 ~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~-----~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~------ 478 (895)
T KOG2076|consen 410 VSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQN-----AFVWYKLARCYMELGEYEEAIEFYEKVLIL------ 478 (895)
T ss_pred hhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccc-----hhhhHHHHHHHHHHhhHHHHHHHHHHHHhc------
Confidence 6677888999999999 6999999999998876554332 458999999999999999999999999975
Q ss_pred cchHHHhHHHHHHHHHhhCCHHHHHHHHHHhh-cCCC---C-CCchHHHHHHHHHHHH-hcCCHHHHHHHHhh
Q 026767 124 TNSQCKAYLSAIIVYLYANDFKQAEKCYNDCS-QVDA---F-LRSDQNRCATKLISAY-TEGDVEEIKRVAQS 190 (233)
Q Consensus 124 ~~~~a~~~~~lg~~~~~~gd~~~A~~~~~~al-~~~~---~-~~~~e~~~l~~L~~a~-~~gd~~~a~~~~~~ 190 (233)
.+..-.+...|+.++..+|++++|.+.++.-. -.+. . .-+.+.+++....+.+ ..|+.+.+......
T Consensus 479 ~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi~t~~~ 551 (895)
T KOG2076|consen 479 APDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREEFINTAST 551 (895)
T ss_pred CCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 23334567899999999999999999998854 1211 1 2367777888888877 78998887655443
No 125
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.08 E-value=0.00011 Score=67.62 Aligned_cols=132 Identities=19% Similarity=0.085 Sum_probs=111.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCChHHH
Q 026767 9 AKHMESAAALAKELHNWREVADFYRKASELYNECGRSQPASDALAKAARALE-DAVPEDAIQLYTDACIMLEEDDKEQMA 87 (233)
Q Consensus 9 a~~~~~~g~~~~~~g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~~~~~ 87 (233)
-+.+..++..+...+..++|.-|..+|..++ ...++++...|.++. .|...+|.+.|..|+.+-++.
T Consensus 650 ~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~------~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~h------ 717 (799)
T KOG4162|consen 650 QKLWLLAADLFLLSGNDDEARSCLLEASKID------PLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDH------ 717 (799)
T ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHhcc------hhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCC------
Confidence 3456678888888999999999999998887 467889999999999 899999999999999887753
Q ss_pred HHHHHHHHHHHHHhccHHHHHH--HHHHHHHHHhHccCcchHHHhHHHHHHHHHhhCCHHHHHHHHHHhhcCC
Q 026767 88 FDLYRAATNVYIKLEKYADAAT--FLLRWGLAADKCNATNSQCKAYLSAIIVYLYANDFKQAEKCYNDCSQVD 158 (233)
Q Consensus 88 ~~~l~~lg~~~~~~g~~~~A~~--~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~gd~~~A~~~~~~al~~~ 158 (233)
..++..+|.++.+.|+..-|.. ++..++.+ .+....+++.+|.++..+||..+|.++|.-++++.
T Consensus 718 v~s~~Ala~~lle~G~~~la~~~~~L~dalr~------dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe 784 (799)
T KOG4162|consen 718 VPSMTALAELLLELGSPRLAEKRSLLSDALRL------DPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLE 784 (799)
T ss_pred cHHHHHHHHHHHHhCCcchHHHHHHHHHHHhh------CCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhc
Confidence 2578889999999997777776 88888764 44455689999999999999999999999998553
No 126
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.07 E-value=9.3e-06 Score=52.33 Aligned_cols=56 Identities=18% Similarity=0.158 Sum_probs=27.2
Q ss_pred HHHhh-hCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Q 026767 56 ARALE-DAVPEDAIQLYTDACIMLEEDDKEQMAFDLYRAATNVYIKLEKYADAATFLLRWGLA 117 (233)
Q Consensus 56 g~~~~-~g~~~~A~~~~~~Al~~~~~~g~~~~~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~ 117 (233)
|..+. .|++++|+..|+++++..+. -..++..+|.++..+|++++|+.+|++++.+
T Consensus 4 a~~~~~~g~~~~A~~~~~~~l~~~P~------~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 4 ARALYQQGDYDEAIAAFEQALKQDPD------NPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHHCTHHHHHHHHHHHHHCCSTT------HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 44444 45555555555555544432 1234555555555555555555555555443
No 127
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.06 E-value=6.7e-05 Score=64.72 Aligned_cols=164 Identities=15% Similarity=0.108 Sum_probs=112.9
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCChHHH------H
Q 026767 16 AALAKELHNWREVADFYRKASELYNECGRSQPASDALAKAARALE-DAVPEDAIQLYTDACIMLEEDDKEQMA------F 88 (233)
Q Consensus 16 g~~~~~~g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~~~~~------~ 88 (233)
+.++-..+++++|..---.-+.+ .. .-+.++.--|.++. .++.+.|+.+|++++.+-+...+...+ -
T Consensus 176 a~cl~~~~~~~~a~~ea~~ilkl----d~--~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~l 249 (486)
T KOG0550|consen 176 AECLAFLGDYDEAQSEAIDILKL----DA--TNAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKL 249 (486)
T ss_pred hhhhhhcccchhHHHHHHHHHhc----cc--chhHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHH
Confidence 34455677777776533322222 11 22344455577777 899999999999999988765532222 2
Q ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHccCcchHHHhHHHHHHHHHhhCCHHHHHHHHHHhhcCCCCCCchHHHH
Q 026767 89 DLYRAATNVYIKLEKYADAATFLLRWGLAADKCNATNSQCKAYLSAIIVYLYANDFKQAEKCYNDCSQVDAFLRSDQNRC 168 (233)
Q Consensus 89 ~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~gd~~~A~~~~~~al~~~~~~~~~e~~~ 168 (233)
.....-|.-..+.|+|.+|.++|.++|.+-. ......++.|.+.+.|..++|+..+|+.-.++++.+.. .--..
T Consensus 250 e~~k~~gN~~fk~G~y~~A~E~Yteal~idP--~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~----syika 323 (486)
T KOG0550|consen 250 EVKKERGNDAFKNGNYRKAYECYTEALNIDP--SNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDS----SYIKA 323 (486)
T ss_pred HHHHhhhhhHhhccchhHHHHHHHHhhcCCc--cccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCH----HHHHH
Confidence 3455668888999999999999999998743 35567789999999999999999999999999986642 11233
Q ss_pred HHHHHHHH-hcCCHHHHHHHHhhc
Q 026767 169 ATKLISAY-TEGDVEEIKRVAQSS 191 (233)
Q Consensus 169 l~~L~~a~-~~gd~~~a~~~~~~~ 191 (233)
+..-+.++ ..++++.|.+-++.+
T Consensus 324 ll~ra~c~l~le~~e~AV~d~~~a 347 (486)
T KOG0550|consen 324 LLRRANCHLALEKWEEAVEDYEKA 347 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444455 456666666555555
No 128
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.05 E-value=0.0001 Score=70.25 Aligned_cols=165 Identities=11% Similarity=0.065 Sum_probs=80.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCChHHHH
Q 026767 10 KHMESAAALAKELHNWREVADFYRKASELYNECGRSQPASDALAKAARALE-DAVPEDAIQLYTDACIMLEEDDKEQMAF 88 (233)
Q Consensus 10 ~~~~~~g~~~~~~g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~~~~~~ 88 (233)
.++..+|.+|..+|++++|...|++++++- ..-+.+++++|..|. . +.++|++++.+|+..+-........-
T Consensus 117 ~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D------~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~~i~~kq~~~~~ 189 (906)
T PRK14720 117 LALRTLAEAYAKLNENKKLKGVWERLVKAD------RDNPEIVKKLATSYEEE-DKEKAITYLKKAIYRFIKKKQYVGIE 189 (906)
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHhcC------cccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHhhhcchHHH
Confidence 355555555555555555555555555553 234455555555555 4 55555555555555544333222221
Q ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHccCcchHHHhHHHHHHHHHhhCCHHHHHHHHHHhhcCCCCCCchHHHH
Q 026767 89 DLYRAATNVYIKLEKYADAATFLLRWGLAADKCNATNSQCKAYLSAIIVYLYANDFKQAEKCYNDCSQVDAFLRSDQNRC 168 (233)
Q Consensus 89 ~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~gd~~~A~~~~~~al~~~~~~~~~e~~~ 168 (233)
..+..+-. ....+++.=....++.+. ..+ .......+.-+-.+|...++++++...+...+....- ...+
T Consensus 190 e~W~k~~~--~~~~d~d~f~~i~~ki~~---~~~-~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~----n~~a 259 (906)
T PRK14720 190 EIWSKLVH--YNSDDFDFFLRIERKVLG---HRE-FTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNK----NNKA 259 (906)
T ss_pred HHHHHHHh--cCcccchHHHHHHHHHHh---hhc-cchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCc----chhh
Confidence 11111111 011111111111111110 111 1111222344447788888899999999988855432 2344
Q ss_pred HHHHHHHHh--cCCHHHHHHHHhhc
Q 026767 169 ATKLISAYT--EGDVEEIKRVAQSS 191 (233)
Q Consensus 169 l~~L~~a~~--~gd~~~a~~~~~~~ 191 (233)
+..|++.|. -++...+.++++-.
T Consensus 260 ~~~l~~~y~~kY~~~~~~ee~l~~s 284 (906)
T PRK14720 260 REELIRFYKEKYKDHSLLEDYLKMS 284 (906)
T ss_pred HHHHHHHHHHHccCcchHHHHHHHh
Confidence 667777762 45666777777666
No 129
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.04 E-value=0.00017 Score=63.18 Aligned_cols=117 Identities=18% Similarity=0.194 Sum_probs=88.0
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 026767 17 ALAKELHNWREVADFYRKASELYNECGRSQPASDALAKAARALE-DAVPEDAIQLYTDACIMLEEDDKEQMAFDLYRAAT 95 (233)
Q Consensus 17 ~~~~~~g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~~~~~~~~l~~lg 95 (233)
..+...+++++|+..+++-..- ++. +..-++.++. .++..+|++.+.+++...++. +..+.-.+
T Consensus 177 ~~l~~t~~~~~ai~lle~L~~~-----~pe----v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d------~~LL~~Qa 241 (395)
T PF09295_consen 177 KYLSLTQRYDEAIELLEKLRER-----DPE----VAVLLARVYLLMNEEVEAIRLLNEALKENPQD------SELLNLQA 241 (395)
T ss_pred HHHhhcccHHHHHHHHHHHHhc-----CCc----HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCC------HHHHHHHH
Confidence 4445567777777777764332 232 3334788877 678889999999999554433 56888899
Q ss_pred HHHHHhccHHHHHHHHHHHHHHHhHccCcchHHHhHHHHHHHHHhhCCHHHHHHHHHHh
Q 026767 96 NVYIKLEKYADAATFLLRWGLAADKCNATNSQCKAYLSAIIVYLYANDFKQAEKCYNDC 154 (233)
Q Consensus 96 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~gd~~~A~~~~~~a 154 (233)
.+++..++|+.|+.+.+++..+ .+..-.++..|+.+|...|+++.|+-.++-+
T Consensus 242 ~fLl~k~~~~lAL~iAk~av~l------sP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~ 294 (395)
T PF09295_consen 242 EFLLSKKKYELALEIAKKAVEL------SPSEFETWYQLAECYIQLGDFENALLALNSC 294 (395)
T ss_pred HHHHhcCCHHHHHHHHHHHHHh------CchhHHHHHHHHHHHHhcCCHHHHHHHHhcC
Confidence 9999999999999999999876 4556678888999999999999998877754
No 130
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.02 E-value=9e-05 Score=67.89 Aligned_cols=123 Identities=11% Similarity=0.030 Sum_probs=92.3
Q ss_pred HHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHccCcchHHHhH
Q 026767 53 AKAARALE-DAVPEDAIQLYTDACIMLEEDDKEQMAFDLYRAATNVYIKLEKYADAATFLLRWGLAADKCNATNSQCKAY 131 (233)
Q Consensus 53 ~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~~~~~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~ 131 (233)
..+|.... ++++.++.++++.++++..-. -.++..+|.+..+++++..|.++|.+.+.+ .++.+.++
T Consensus 489 r~~~~~~~~~~~fs~~~~hle~sl~~nplq------~~~wf~~G~~ALqlek~q~av~aF~rcvtL------~Pd~~eaW 556 (777)
T KOG1128|consen 489 RSLALLILSNKDFSEADKHLERSLEINPLQ------LGTWFGLGCAALQLEKEQAAVKAFHRCVTL------EPDNAEAW 556 (777)
T ss_pred HhhccccccchhHHHHHHHHHHHhhcCccc------hhHHHhccHHHHHHhhhHHHHHHHHHHhhc------CCCchhhh
Confidence 33444444 589999999999999987742 358999999999999999999999999865 55667789
Q ss_pred HHHHHHHHhhCCHHHHHHHHHHhhcCCCCC-CchHHHHHHHHHHHHhcCCHHHHHHHHhhc
Q 026767 132 LSAIIVYLYANDFKQAEKCYNDCSQVDAFL-RSDQNRCATKLISAYTEGDVEEIKRVAQSS 191 (233)
Q Consensus 132 ~~lg~~~~~~gd~~~A~~~~~~al~~~~~~-~~~e~~~l~~L~~a~~~gd~~~a~~~~~~~ 191 (233)
+|+...|...|+..+|...+.+++.....+ ..+|...+. +..-|..+.|.+++.+-
T Consensus 557 nNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlv----svdvge~eda~~A~~rl 613 (777)
T KOG1128|consen 557 NNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLV----SVDVGEFEDAIKAYHRL 613 (777)
T ss_pred hhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhh----hhhcccHHHHHHHHHHH
Confidence 999999999999999999999998554221 122322211 22457777777666655
No 131
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=98.00 E-value=0.00052 Score=53.66 Aligned_cols=128 Identities=14% Similarity=0.075 Sum_probs=105.7
Q ss_pred HHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhcc
Q 026767 25 WREVADFYRKASELYNECGRSQPASDALAKAARALE-DAVPEDAIQLYTDACIMLEEDDKEQMAFDLYRAATNVYIKLEK 103 (233)
Q Consensus 25 ~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~~~~~~~~l~~lg~~~~~~g~ 103 (233)
.++-++-++.-++-++.+.--.....++..+|..|. .|+.+.|++.|.++.+.....+. ......++-.+.+..++
T Consensus 12 ~~~~~~~Le~elk~~~~n~~kesir~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~---~id~~l~~irv~i~~~d 88 (177)
T PF10602_consen 12 NAEELEKLEAELKDAKSNLGKESIRMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGH---KIDMCLNVIRVAIFFGD 88 (177)
T ss_pred HHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHH---HHHHHHHHHHHHHHhCC
Confidence 445566677777888877777788899999999999 79999999999998887555443 34577788888999999
Q ss_pred HHHHHHHHHHHHHHHhHccCcchHHHhHHHHHHHHHhhCCHHHHHHHHHHhh
Q 026767 104 YADAATFLLRWGLAADKCNATNSQCKAYLSAIIVYLYANDFKQAEKCYNDCS 155 (233)
Q Consensus 104 ~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~gd~~~A~~~~~~al 155 (233)
+.....+..++-.+....++.....+.-..-|+.++..++|.+|-+.|-.+.
T Consensus 89 ~~~v~~~i~ka~~~~~~~~d~~~~nrlk~~~gL~~l~~r~f~~AA~~fl~~~ 140 (177)
T PF10602_consen 89 WSHVEKYIEKAESLIEKGGDWERRNRLKVYEGLANLAQRDFKEAAELFLDSL 140 (177)
T ss_pred HHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhchHHHHHHHHHccC
Confidence 9999999999998887766655555666778888999999999999999986
No 132
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.99 E-value=0.00031 Score=57.19 Aligned_cols=104 Identities=13% Similarity=0.102 Sum_probs=71.3
Q ss_pred CCchHHHHHHHHHHHHhhhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHcc
Q 026767 43 GRSQPASDALAKAARALEDAVPEDAIQLYTDACIMLEEDDKEQMAFDLYRAATNVYIKLEKYADAATFLLRWGLAADKCN 122 (233)
Q Consensus 43 g~~~~~a~~l~~lg~~~~~g~~~~A~~~~~~Al~~~~~~g~~~~~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~ 122 (233)
.||...+.--.+++.+-.+|..-+||+..-.=++.|.... +++..++++|+..|+|.+|.-+|++.+-+
T Consensus 115 ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~------EAW~eLaeiY~~~~~f~kA~fClEE~ll~----- 183 (289)
T KOG3060|consen 115 DDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQ------EAWHELAEIYLSEGDFEKAAFCLEELLLI----- 183 (289)
T ss_pred cCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcH------HHHHHHHHHHHhHhHHHHHHHHHHHHHHc-----
Confidence 4455555545566666556776777777777777666432 56777888899999999999999888743
Q ss_pred CcchHHHhHHHHHHHHHhhC---CHHHHHHHHHHhhcCC
Q 026767 123 ATNSQCKAYLSAIIVYLYAN---DFKQAEKCYNDCSQVD 158 (233)
Q Consensus 123 ~~~~~a~~~~~lg~~~~~~g---d~~~A~~~~~~al~~~ 158 (233)
.+.....+..++.++.-+| ++.-|+++|.+++.+.
T Consensus 184 -~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~ 221 (289)
T KOG3060|consen 184 -QPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLN 221 (289)
T ss_pred -CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhC
Confidence 2333345566777766655 6778888998888654
No 133
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=97.99 E-value=3.5e-05 Score=67.68 Aligned_cols=65 Identities=12% Similarity=0.041 Sum_probs=46.1
Q ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHccCcchHH-HhHHHHHHHHHhhCCHHHHHHHHHHhhcC
Q 026767 89 DLYRAATNVYIKLEKYADAATFLLRWGLAADKCNATNSQC-KAYLSAIIVYLYANDFKQAEKCYNDCSQV 157 (233)
Q Consensus 89 ~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a-~~~~~lg~~~~~~gd~~~A~~~~~~al~~ 157 (233)
..++|+|.+|..+|+|++|+..|++++++. .....+ .+++++|.+|..+|++++|+.++++++.+
T Consensus 76 ~a~~NLG~AL~~lGryeEAIa~f~rALeL~----Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 76 EDAVNLGLSLFSKGRVKDALAQFETALELN----PNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC----CCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 567778888888888888888888877652 122222 45778888888888888888888887754
No 134
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=97.98 E-value=2.6e-05 Score=68.45 Aligned_cols=68 Identities=13% Similarity=-0.003 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHH
Q 026767 7 DAAKHMESAAALAKELHNWREVADFYRKASELYNECGRSQPASDALAKAARALE-DAVPEDAIQLYTDACIM 77 (233)
Q Consensus 7 ~~a~~~~~~g~~~~~~g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~ 77 (233)
.-+.++.|+|.+|...|++++|+.+|++|+++.- +...+..++.|+|.+|. .|++++|++++++|+++
T Consensus 73 ~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~P---d~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 73 KTAEDAVNLGLSLFSKGRVKDALAQFETALELNP---NPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC---CchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3467788888888888888888888888888741 12122367888888888 78888888888888876
No 135
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=97.95 E-value=0.0012 Score=47.73 Aligned_cols=107 Identities=13% Similarity=0.012 Sum_probs=79.1
Q ss_pred HHHHHHHHHH---hhhCCHHHHHHHHHHHHHHHHhcC------ChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHh
Q 026767 49 SDALAKAARA---LEDAVPEDAIQLYTDACIMLEEDD------KEQMAFDLYRAATNVYIKLEKYADAATFLLRWGLAAD 119 (233)
Q Consensus 49 a~~l~~lg~~---~~~g~~~~A~~~~~~Al~~~~~~g------~~~~~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~ 119 (233)
+.+|.-++.. +..|.|++|...|++|+++.+... ....-+.|+-.|+..+..+|+|++++..-.+++..+.
T Consensus 7 a~aY~aLs~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFN 86 (144)
T PF12968_consen 7 AMAYMALSDAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFN 86 (144)
T ss_dssp HHHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHh
Confidence 4444444443 335999999999999999988764 3444567999999999999999999999999999887
Q ss_pred HccCcc-hHH----HhHHHHHHHHHhhCCHHHHHHHHHHhh
Q 026767 120 KCNATN-SQC----KAYLSAIIVYLYANDFKQAEKCYNDCS 155 (233)
Q Consensus 120 ~~~~~~-~~a----~~~~~lg~~~~~~gd~~~A~~~~~~al 155 (233)
+-|..+ ..+ .+.++-+.....+|+.++|...|+.+-
T Consensus 87 RRGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~ag 127 (144)
T PF12968_consen 87 RRGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAG 127 (144)
T ss_dssp HH--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred hccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHH
Confidence 655432 222 234778888899999999999999985
No 136
>PLN03077 Protein ECB2; Provisional
Probab=97.95 E-value=0.0011 Score=64.15 Aligned_cols=123 Identities=11% Similarity=0.014 Sum_probs=81.5
Q ss_pred HHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHccCcchHHH
Q 026767 51 ALAKAARALE-DAVPEDAIQLYTDACIMLEEDDKEQMAFDLYRAATNVYIKLEKYADAATFLLRWGLAADKCNATNSQCK 129 (233)
Q Consensus 51 ~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~~~~~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~ 129 (233)
+|+.+...|. .|+.++|++.|++..+ .|-.... .++..+-..+.+.|++++|..+|++....+ +..+. ..
T Consensus 556 s~n~lI~~~~~~G~~~~A~~lf~~M~~----~g~~Pd~-~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~---gi~P~-~~ 626 (857)
T PLN03077 556 SWNILLTGYVAHGKGSMAVELFNRMVE----SGVNPDE-VTFISLLCACSRSGMVTQGLEYFHSMEEKY---SITPN-LK 626 (857)
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHH----cCCCCCc-ccHHHHHHHHhhcChHHHHHHHHHHHHHHh---CCCCc-hH
Confidence 3556666666 6888888888887553 2322222 367777778999999999999999876432 33333 35
Q ss_pred hHHHHHHHHHhhCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHH-hcCCHHHHHHHH
Q 026767 130 AYLSAIIVYLYANDFKQAEKCYNDCSQVDAFLRSDQNRCATKLISAY-TEGDVEEIKRVA 188 (233)
Q Consensus 130 ~~~~lg~~~~~~gd~~~A~~~~~~al~~~~~~~~~e~~~l~~L~~a~-~~gd~~~a~~~~ 188 (233)
.|..++.++.+.|++++|.+.+++.-..+ ...+...|..++ ..|+.+.++.+.
T Consensus 627 ~y~~lv~~l~r~G~~~eA~~~~~~m~~~p------d~~~~~aLl~ac~~~~~~e~~e~~a 680 (857)
T PLN03077 627 HYACVVDLLGRAGKLTEAYNFINKMPITP------DPAVWGALLNACRIHRHVELGELAA 680 (857)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHCCCCC------CHHHHHHHHHHHHHcCChHHHHHHH
Confidence 78999999999999999999998852111 133444455555 345555544443
No 137
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=97.94 E-value=0.0011 Score=58.36 Aligned_cols=136 Identities=15% Similarity=0.059 Sum_probs=98.9
Q ss_pred HHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHccCcchHHH
Q 026767 51 ALAKAARALE-DAVPEDAIQLYTDACIMLEEDDKEQMAFDLYRAATNVYIKLEKYADAATFLLRWGLAADKCNATNSQCK 129 (233)
Q Consensus 51 ~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~~~~~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~ 129 (233)
+....+..+. .|.+++|+..+..- .....+.. ..+.-.++++.+.+++++|.+.+++++.+ .+...-
T Consensus 308 a~YG~A~~~~~~~~~d~A~~~l~~L---~~~~P~N~---~~~~~~~~i~~~~nk~~~A~e~~~kal~l------~P~~~~ 375 (484)
T COG4783 308 AQYGRALQTYLAGQYDEALKLLQPL---IAAQPDNP---YYLELAGDILLEANKAKEAIERLKKALAL------DPNSPL 375 (484)
T ss_pred HHHHHHHHHHHhcccchHHHHHHHH---HHhCCCCH---HHHHHHHHHHHHcCChHHHHHHHHHHHhc------CCCccH
Confidence 3444455555 68888888888873 33333222 24567899999999999999999999975 233344
Q ss_pred hHHHHHHHHHhhCCHHHHHHHHHHhh-cCCCCCCchHHHHHHHHHHHH-hcCCHHHHHHHHhhc--ccccchHHHHHH
Q 026767 130 AYLSAIIVYLYANDFKQAEKCYNDCS-QVDAFLRSDQNRCATKLISAY-TEGDVEEIKRVAQSS--AISNLDHVIIKL 203 (233)
Q Consensus 130 ~~~~lg~~~~~~gd~~~A~~~~~~al-~~~~~~~~~e~~~l~~L~~a~-~~gd~~~a~~~~~~~--~~~~ld~~~~~l 203 (233)
...++|.+++..|++.+|+..+.+++ ..+.. .....-|+++| +.|+..++..+..+. ....+..++.-+
T Consensus 376 l~~~~a~all~~g~~~eai~~L~~~~~~~p~d-----p~~w~~LAqay~~~g~~~~a~~A~AE~~~~~G~~~~A~~~l 448 (484)
T COG4783 376 LQLNLAQALLKGGKPQEAIRILNRYLFNDPED-----PNGWDLLAQAYAELGNRAEALLARAEGYALAGRLEQAIIFL 448 (484)
T ss_pred HHHHHHHHHHhcCChHHHHHHHHHHhhcCCCC-----chHHHHHHHHHHHhCchHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 55899999999999999999999987 55544 34556788888 788888888888877 666666664433
No 138
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=97.88 E-value=3.2e-05 Score=43.88 Aligned_cols=31 Identities=13% Similarity=0.117 Sum_probs=21.4
Q ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHhH
Q 026767 90 LYRAATNVYIKLEKYADAATFLLRWGLAADK 120 (233)
Q Consensus 90 ~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~ 120 (233)
++.+||.+|.++|+|++|+++|++++.+..+
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l~~~ 31 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALALARD 31 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHhccc
Confidence 3567777777777777777777777766544
No 139
>PRK15331 chaperone protein SicA; Provisional
Probab=97.87 E-value=0.00062 Score=52.08 Aligned_cols=105 Identities=14% Similarity=0.077 Sum_probs=79.8
Q ss_pred cCCchHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhH
Q 026767 42 CGRSQPASDALAKAARALE-DAVPEDAIQLYTDACIMLEEDDKEQMAFDLYRAATNVYIKLEKYADAATFLLRWGLAADK 120 (233)
Q Consensus 42 ~g~~~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~~~~~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~ 120 (233)
.|=+...-......|.-+. .|++++|...|+--+.+-.- + ..-+..+|.++..+++|.+|+..|-.+..+-.
T Consensus 30 ~gis~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~--n----~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~- 102 (165)
T PRK15331 30 HGIPQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFY--N----PDYTMGLAAVCQLKKQFQKACDLYAVAFTLLK- 102 (165)
T ss_pred hCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcC--c----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-
Confidence 3444455555666666666 79999999998866553221 1 23578899999999999999999999987643
Q ss_pred ccCcchHHHhHHHHHHHHHhhCCHHHHHHHHHHhhcCC
Q 026767 121 CNATNSQCKAYLSAIIVYLYANDFKQAEKCYNDCSQVD 158 (233)
Q Consensus 121 ~~~~~~~a~~~~~lg~~~~~~gd~~~A~~~~~~al~~~ 158 (233)
++++ ..+..|.|++.+|+...|+.+|+.++..+
T Consensus 103 -~dp~----p~f~agqC~l~l~~~~~A~~~f~~a~~~~ 135 (165)
T PRK15331 103 -NDYR----PVFFTGQCQLLMRKAAKARQCFELVNERT 135 (165)
T ss_pred -CCCC----ccchHHHHHHHhCCHHHHHHHHHHHHhCc
Confidence 3332 36789999999999999999999998644
No 140
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.86 E-value=0.00074 Score=61.46 Aligned_cols=116 Identities=14% Similarity=-0.010 Sum_probs=75.7
Q ss_pred HHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh-h---C-----CHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 026767 25 WREVADFYRKASELYNECGRSQPASDALAKAARALE-D---A-----VPEDAIQLYTDACIMLEEDDKEQMAFDLYRAAT 95 (233)
Q Consensus 25 ~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~-~---g-----~~~~A~~~~~~Al~~~~~~g~~~~~~~~l~~lg 95 (233)
+.+|+++|++|+++-- .-+.++..++.++. . + +...+.+...+++.+-....+ ..++.-+|
T Consensus 358 ~~~A~~lle~Ai~ldP------~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~~~~~----~~~~~ala 427 (517)
T PRK10153 358 LNKASDLLEEILKSEP------DFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPELNVL----PRIYEILA 427 (517)
T ss_pred HHHHHHHHHHHHHhCC------CcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcccCcCC----hHHHHHHH
Confidence 6688888888888742 22444444444444 2 1 122333333333332111111 24667778
Q ss_pred HHHHHhccHHHHHHHHHHHHHHHhHccCcchHHHhHHHHHHHHHhhCCHHHHHHHHHHhhcC
Q 026767 96 NVYIKLEKYADAATFLLRWGLAADKCNATNSQCKAYLSAIIVYLYANDFKQAEKCYNDCSQV 157 (233)
Q Consensus 96 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~gd~~~A~~~~~~al~~ 157 (233)
.++...|++++|...+++|+.+- +. +.+|..+|.++...|++++|...|++|+.+
T Consensus 428 ~~~~~~g~~~~A~~~l~rAl~L~------ps-~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L 482 (517)
T PRK10153 428 VQALVKGKTDEAYQAINKAIDLE------MS-WLNYVLLGKVYELKGDNRLAADAYSTAFNL 482 (517)
T ss_pred HHHHhcCCHHHHHHHHHHHHHcC------CC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 88888899999999999998762 22 467899999999999999999999999854
No 141
>PLN02789 farnesyltranstransferase
Probab=97.86 E-value=0.00094 Score=57.15 Aligned_cols=126 Identities=10% Similarity=-0.011 Sum_probs=98.3
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh-hC-CHHHHHHHHHHHHHHHHhcCChHHHHHHH
Q 026767 14 SAAALAKELHNWREVADFYRKASELYNECGRSQPASDALAKAARALE-DA-VPEDAIQLYTDACIMLEEDDKEQMAFDLY 91 (233)
Q Consensus 14 ~~g~~~~~~g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~-~g-~~~~A~~~~~~Al~~~~~~g~~~~~~~~l 91 (233)
-+-.++...+++++|+..+.+++.+- ..-..++..-+.++. .| ++++++.++.+++...+.. ..++
T Consensus 42 ~~ra~l~~~e~serAL~lt~~aI~ln------P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npkn------yqaW 109 (320)
T PLN02789 42 YFRAVYASDERSPRALDLTADVIRLN------PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKN------YQIW 109 (320)
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHC------chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcc------hHHh
Confidence 33344666889999999999999873 234567888888888 66 6899999999999876643 2467
Q ss_pred HHHHHHHHHhccH--HHHHHHHHHHHHHHhHccCcchHHHhHHHHHHHHHhhCCHHHHHHHHHHhhcC
Q 026767 92 RAATNVYIKLEKY--ADAATFLLRWGLAADKCNATNSQCKAYLSAIIVYLYANDFKQAEKCYNDCSQV 157 (233)
Q Consensus 92 ~~lg~~~~~~g~~--~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~gd~~~A~~~~~~al~~ 157 (233)
+..+.++..+|+. .++++++.+++.+ .+....++...+.+....|++.+|++++.+++..
T Consensus 110 ~~R~~~l~~l~~~~~~~el~~~~kal~~------dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~ 171 (320)
T PLN02789 110 HHRRWLAEKLGPDAANKELEFTRKILSL------DAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEE 171 (320)
T ss_pred HHHHHHHHHcCchhhHHHHHHHHHHHHh------CcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 7788888888874 7889999888865 2344567888999999999999999999999843
No 142
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=97.84 E-value=5.9e-05 Score=42.76 Aligned_cols=33 Identities=9% Similarity=0.309 Sum_probs=21.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcC
Q 026767 11 HMESAAALAKELHNWREVADFYRKASELYNECG 43 (233)
Q Consensus 11 ~~~~~g~~~~~~g~~~eA~~~~~~A~~l~~~~g 43 (233)
++.++|.+|..+|++++|+++|++++.+....+
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l~~~~~ 33 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALALARDPE 33 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHHHHHCT
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHhccccc
Confidence 456677777777777777777777766655444
No 143
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.84 E-value=0.0029 Score=51.99 Aligned_cols=141 Identities=9% Similarity=-0.117 Sum_probs=107.0
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh-hC---------------C---HHHH
Q 026767 7 DAAKHMESAAALAKELHNWREVADFYRKASELYNECGRSQPASDALAKAARALE-DA---------------V---PEDA 67 (233)
Q Consensus 7 ~~a~~~~~~g~~~~~~g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~-~g---------------~---~~~A 67 (233)
-+..+...+|.+|.+.+++++|+.+|++.+..+-... ....++..+|.++. .+ | ..+|
T Consensus 67 ~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~---~~~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A 143 (243)
T PRK10866 67 YSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHP---NIDYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAA 143 (243)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCC---chHHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHH
Confidence 4456677899999999999999999999999985443 45677777777642 21 2 2468
Q ss_pred HHHHHHHHHHHHhcCChHHH-----------HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHccCcchHHHhHHHHHH
Q 026767 68 IQLYTDACIMLEEDDKEQMA-----------FDLYRAATNVYIKLEKYADAATFLLRWGLAADKCNATNSQCKAYLSAII 136 (233)
Q Consensus 68 ~~~~~~Al~~~~~~g~~~~~-----------~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~ 136 (233)
+..+++-++.|++..-...+ +.--..+|..|.+.|+|..|+.-++..++-+ .+......++..++.
T Consensus 144 ~~~~~~li~~yP~S~ya~~A~~rl~~l~~~la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Y---p~t~~~~eal~~l~~ 220 (243)
T PRK10866 144 FRDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYELSVAEYYTKRGAYVAVVNRVEQMLRDY---PDTQATRDALPLMEN 220 (243)
T ss_pred HHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHC---CCCchHHHHHHHHHH
Confidence 88999999988876522221 1222356788999999999999999888654 455666778899999
Q ss_pred HHHhhCCHHHHHHHHHH
Q 026767 137 VYLYANDFKQAEKCYND 153 (233)
Q Consensus 137 ~~~~~gd~~~A~~~~~~ 153 (233)
.|..+|..++|......
T Consensus 221 ay~~lg~~~~a~~~~~~ 237 (243)
T PRK10866 221 AYRQLQLNAQADKVAKI 237 (243)
T ss_pred HHHHcCChHHHHHHHHH
Confidence 99999999999887654
No 144
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.84 E-value=0.0038 Score=49.78 Aligned_cols=137 Identities=15% Similarity=0.040 Sum_probs=100.0
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh-h-----------CCHHHHHHHHHHH
Q 026767 7 DAAKHMESAAALAKELHNWREVADFYRKASELYNECGRSQPASDALAKAARALE-D-----------AVPEDAIQLYTDA 74 (233)
Q Consensus 7 ~~a~~~~~~g~~~~~~g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~-~-----------g~~~~A~~~~~~A 74 (233)
-+..+...+|.++...|++++|+..|++-+..|-..- ....++..+|.++. . +...+|+..|+.-
T Consensus 40 ~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~---~~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~l 116 (203)
T PF13525_consen 40 YAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSP---KADYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEEL 116 (203)
T ss_dssp THHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-T---THHHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCc---chhhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHH
Confidence 3567788899999999999999999999998885443 45566777777654 2 3356899999999
Q ss_pred HHHHHhcCChHHH-----------HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHccCcchHHHhHHHHHHHHHhhCC
Q 026767 75 CIMLEEDDKEQMA-----------FDLYRAATNVYIKLEKYADAATFLLRWGLAADKCNATNSQCKAYLSAIIVYLYAND 143 (233)
Q Consensus 75 l~~~~~~g~~~~~-----------~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~gd 143 (233)
+.-|++......+ +.--..+|..|.+.|.|..|+..++.+++-+ .+......++..++.+|..+|.
T Consensus 117 i~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~y---p~t~~~~~al~~l~~~y~~l~~ 193 (203)
T PF13525_consen 117 IKRYPNSEYAEEAKKRLAELRNRLAEHELYIARFYYKRGKYKAAIIRFQYVIENY---PDTPAAEEALARLAEAYYKLGL 193 (203)
T ss_dssp HHH-TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-HHHHHHHHHHHHHHS---TTSHHHHHHHHHHHHHHHHTT-
T ss_pred HHHCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC---CCCchHHHHHHHHHHHHHHhCC
Confidence 9999987743322 2223446889999999999999999888754 4455566788999999999999
Q ss_pred HHHHHH
Q 026767 144 FKQAEK 149 (233)
Q Consensus 144 ~~~A~~ 149 (233)
...|..
T Consensus 194 ~~~a~~ 199 (203)
T PF13525_consen 194 KQAADT 199 (203)
T ss_dssp HHHHHH
T ss_pred hHHHHH
Confidence 885543
No 145
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=97.82 E-value=0.0014 Score=59.52 Aligned_cols=133 Identities=14% Similarity=0.144 Sum_probs=104.7
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCChHH
Q 026767 8 AAKHMESAAALAKELHNWREVADFYRKASELYNECGRSQPASDALAKAARALE-DAVPEDAIQLYTDACIMLEEDDKEQM 86 (233)
Q Consensus 8 ~a~~~~~~g~~~~~~g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~~~~ 86 (233)
...++.-++..|...|++++|+++.++|+.. .......+.--|.++. .|++.+|.++++.|..+-.+..
T Consensus 193 ~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h------tPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DR---- 262 (517)
T PF12569_consen 193 LLWTLYFLAQHYDYLGDYEKALEYIDKAIEH------TPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADR---- 262 (517)
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc------CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhH----
Confidence 3457788899999999999999999999987 3456788999999999 7999999999999987766532
Q ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHcc-Cc-----chHHHhH-HHHHHHHHhhCCHHHHHHHHHHhhc
Q 026767 87 AFDLYRAATNVYIKLEKYADAATFLLRWGLAADKCN-AT-----NSQCKAY-LSAIIVYLYANDFKQAEKCYNDCSQ 156 (233)
Q Consensus 87 ~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~-~~-----~~~a~~~-~~lg~~~~~~gd~~~A~~~~~~al~ 156 (233)
.+-+..+..+++.|+.++|...+. +|.+.+ ++ ..++..| ...|.+|.+.|++..|++.|.....
T Consensus 263 --yiNsK~aKy~LRa~~~e~A~~~~~----~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k 333 (517)
T PF12569_consen 263 --YINSKCAKYLLRAGRIEEAEKTAS----LFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLK 333 (517)
T ss_pred --HHHHHHHHHHHHCCCHHHHHHHHH----hhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 355677888899999999998654 444433 11 1123333 7889999999999999999988763
No 146
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.81 E-value=0.00039 Score=54.82 Aligned_cols=106 Identities=21% Similarity=0.141 Sum_probs=85.6
Q ss_pred HHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHccCcc
Q 026767 47 PASDALAKAARALE-DAVPEDAIQLYTDACIMLEEDDKEQMAFDLYRAATNVYIKLEKYADAATFLLRWGLAADKCNATN 125 (233)
Q Consensus 47 ~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~~~~~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 125 (233)
..+..+..=|.-+. .|+|++|...|..|+++.+..-.... ..+|.|-|.++++++.+..|+.-+.+++++ +.
T Consensus 93 ~kad~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~r-sIly~Nraaa~iKl~k~e~aI~dcsKaiel----~p-- 165 (271)
T KOG4234|consen 93 EKADSLKKEGNELFKNGDYEEANSKYQEALESCPSTSTEER-SILYSNRAAALIKLRKWESAIEDCSKAIEL----NP-- 165 (271)
T ss_pred HHHHHHHHHHHHhhhcccHHHHHHHHHHHHHhCccccHHHH-HHHHhhhHHHHHHhhhHHHHHHHHHhhHhc----Cc--
Confidence 34555666676666 89999999999999999988765433 358999999999999999999999999976 22
Q ss_pred hHHHhHHHHHHHHHhhCCHHHHHHHHHHhh-cCCC
Q 026767 126 SQCKAYLSAIIVYLYANDFKQAEKCYNDCS-QVDA 159 (233)
Q Consensus 126 ~~a~~~~~lg~~~~~~gd~~~A~~~~~~al-~~~~ 159 (233)
.--+++..-+.+|-.+..|+.|++-|.+.+ .+|.
T Consensus 166 ty~kAl~RRAeayek~ek~eealeDyKki~E~dPs 200 (271)
T KOG4234|consen 166 TYEKALERRAEAYEKMEKYEEALEDYKKILESDPS 200 (271)
T ss_pred hhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCcc
Confidence 233566777889999999999999999987 4453
No 147
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=97.80 E-value=0.00066 Score=54.71 Aligned_cols=96 Identities=14% Similarity=0.038 Sum_probs=76.3
Q ss_pred cCCHHHHHHHHHHHHHHHHHcC-CchHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhc-------CChHHHHHHHH
Q 026767 22 LHNWREVADFYRKASELYNECG-RSQPASDALAKAARALE-DAVPEDAIQLYTDACIMLEED-------DKEQMAFDLYR 92 (233)
Q Consensus 22 ~g~~~eA~~~~~~A~~l~~~~g-~~~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~-------g~~~~~~~~l~ 92 (233)
...+++|++.|.-|+-.+.-.+ ++...|.++.++|-+|. .|+.+....++++|++.|.+. ........++.
T Consensus 90 ~Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~Y 169 (214)
T PF09986_consen 90 ERTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLY 169 (214)
T ss_pred CCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHH
Confidence 3457899999999999988655 67788999999999999 799888888888888887753 12233445778
Q ss_pred HHHHHHHHhccHHHHHHHHHHHHHH
Q 026767 93 AATNVYIKLEKYADAATFLLRWGLA 117 (233)
Q Consensus 93 ~lg~~~~~~g~~~~A~~~~~~al~~ 117 (233)
-+|.+..++|++++|..+|.+.+..
T Consensus 170 LigeL~rrlg~~~eA~~~fs~vi~~ 194 (214)
T PF09986_consen 170 LIGELNRRLGNYDEAKRWFSRVIGS 194 (214)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHcC
Confidence 8888999999999999988888753
No 148
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=97.80 E-value=0.00071 Score=61.43 Aligned_cols=127 Identities=12% Similarity=0.109 Sum_probs=96.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCChHHHHH
Q 026767 11 HMESAAALAKELHNWREVADFYRKASELYNECGRSQPASDALAKAARALE-DAVPEDAIQLYTDACIMLEEDDKEQMAFD 89 (233)
Q Consensus 11 ~~~~~g~~~~~~g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~~~~~~~ 89 (233)
++.--|..+..+|+.++|..+...++. +|+ ..-.||+-+|.++. ..+|++||++|+.|+.+-+.. -.
T Consensus 43 slAmkGL~L~~lg~~~ea~~~vr~glr-----~d~-~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN------~q 110 (700)
T KOG1156|consen 43 SLAMKGLTLNCLGKKEEAYELVRLGLR-----NDL-KSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKDN------LQ 110 (700)
T ss_pred hHHhccchhhcccchHHHHHHHHHHhc-----cCc-ccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCc------HH
Confidence 344455566668888888888888876 444 34568899999999 799999999999999876542 25
Q ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHhHccCcchHHHhHHHHHHHHHhhCCHHHHHHHHHHhh
Q 026767 90 LYRAATNVYIKLEKYADAATFLLRWGLAADKCNATNSQCKAYLSAIIVYLYANDFKQAEKCYNDCS 155 (233)
Q Consensus 90 ~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~gd~~~A~~~~~~al 155 (233)
++..++.+..++++|....+.=.+-+++ .++.-..++..++.+.-.|++..|....+...
T Consensus 111 ilrDlslLQ~QmRd~~~~~~tr~~LLql------~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~ 170 (700)
T KOG1156|consen 111 ILRDLSLLQIQMRDYEGYLETRNQLLQL------RPSQRASWIGFAVAQHLLGEYKMALEILEEFE 170 (700)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHh------hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7888888888888888888776666654 23333456888888888899999988887776
No 149
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=97.78 E-value=0.0026 Score=59.58 Aligned_cols=113 Identities=14% Similarity=0.106 Sum_probs=74.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHH----HHHHHcCCchHHHH----------HHHHHHHHhh-hCCHHHHHHHHHHH
Q 026767 10 KHMESAAALAKELHNWREVADFYRKAS----ELYNECGRSQPASD----------ALAKAARALE-DAVPEDAIQLYTDA 74 (233)
Q Consensus 10 ~~~~~~g~~~~~~g~~~eA~~~~~~A~----~l~~~~g~~~~~a~----------~l~~lg~~~~-~g~~~~A~~~~~~A 74 (233)
+.|.+.+.-+...+|...|++||+++- ++++-+.+..++.. .|.=.|..++ .|+.+.|+.+|..|
T Consensus 859 ~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A 938 (1416)
T KOG3617|consen 859 NTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSA 938 (1416)
T ss_pred hhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHh
Confidence 456666666666777777777777753 33333333333333 3334477788 79999999999988
Q ss_pred HHHHHhcC------ChHHHH---------HHHHHHHHHHHHhccHHHHHHHHHHH------HHHHhHcc
Q 026767 75 CIMLEEDD------KEQMAF---------DLYRAATNVYIKLEKYADAATFLLRW------GLAADKCN 122 (233)
Q Consensus 75 l~~~~~~g------~~~~~~---------~~l~~lg~~~~~~g~~~~A~~~~~~a------l~~~~~~~ 122 (233)
-++|.... +...++ .+-..+|+.|-..|+..+|+.+|.+| +.++.+.+
T Consensus 939 ~D~fs~VrI~C~qGk~~kAa~iA~esgd~AAcYhlaR~YEn~g~v~~Av~FfTrAqafsnAIRlcKEnd 1007 (1416)
T KOG3617|consen 939 KDYFSMVRIKCIQGKTDKAARIAEESGDKAACYHLARMYENDGDVVKAVKFFTRAQAFSNAIRLCKEND 1007 (1416)
T ss_pred hhhhhheeeEeeccCchHHHHHHHhcccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 87776542 111111 24457899999999999999999886 45555543
No 150
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=97.76 E-value=0.0085 Score=55.84 Aligned_cols=187 Identities=16% Similarity=0.105 Sum_probs=137.4
Q ss_pred ChHHHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhCCHHHHHHHHHHHHHHHHhcC
Q 026767 4 SPWDAAKHMESAAALAK-ELHNWREVADFYRKASELYNECGRSQPASDALAKAARALEDAVPEDAIQLYTDACIMLEEDD 82 (233)
Q Consensus 4 ~~~~~a~~~~~~g~~~~-~~g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~~g~~~~A~~~~~~Al~~~~~~g 82 (233)
.+...+.++..+|.++. .-.++++|..+.+++..+.++.+-.+-.-.+..-++.++.+.++..|.....++++.++..+
T Consensus 54 ~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~a~~~l~~~I~~~~~~~ 133 (608)
T PF10345_consen 54 SPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKAALKNLDKAIEDSETYG 133 (608)
T ss_pred CHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhccC
Confidence 35667888889998876 68899999999999999998844444344555556888886555559999999999999977
Q ss_pred ChHHHHHHHHHH-HHHHHHhccHHHHHHHHHHHHHHHhHccCcchHHHhHHHHHHHHHhhCCHHHHHHHHHHhhc-CC--
Q 026767 83 KEQMAFDLYRAA-TNVYIKLEKYADAATFLLRWGLAADKCNATNSQCKAYLSAIIVYLYANDFKQAEKCYNDCSQ-VD-- 158 (233)
Q Consensus 83 ~~~~~~~~l~~l-g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~gd~~~A~~~~~~al~-~~-- 158 (233)
...+.- ++.-+ ..++...+++..|++.++.........+++.....+...-+.+++..+....+.+..+++.. ..
T Consensus 134 ~~~w~~-~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~ 212 (608)
T PF10345_consen 134 HSAWYY-AFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDDVLELLQRAIAQARSL 212 (608)
T ss_pred chhHHH-HHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhc
Confidence 554432 33333 33333448999999999999999887788877777778888999999988888888888752 11
Q ss_pred CC---CCchHHHHHHHHHHHH---hcCCHHHHHHHHhhc
Q 026767 159 AF---LRSDQNRCATKLISAY---TEGDVEEIKRVAQSS 191 (233)
Q Consensus 159 ~~---~~~~e~~~l~~L~~a~---~~gd~~~a~~~~~~~ 191 (233)
.. .....-.++..+.+.+ ..|++..+...+++.
T Consensus 213 q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~l 251 (608)
T PF10345_consen 213 QLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQL 251 (608)
T ss_pred ccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 11 1333444555555533 689988888888776
No 151
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=97.74 E-value=0.0046 Score=44.71 Aligned_cols=114 Identities=13% Similarity=-0.002 Sum_probs=85.2
Q ss_pred HHHHHHHHHHHHHHHH--cCCHHHHHHHHHHHHHHHHHcCCc------hHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHH
Q 026767 6 WDAAKHMESAAALAKE--LHNWREVADFYRKASELYNECGRS------QPASDALAKAARALE-DAVPEDAIQLYTDACI 76 (233)
Q Consensus 6 ~~~a~~~~~~g~~~~~--~g~~~eA~~~~~~A~~l~~~~g~~------~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~ 76 (233)
..++.+|..++..-++ -|-|++|..-|.+|++..+..-.- .--|.|+..++..+. .|+|++++..-.+|+.
T Consensus 4 keVa~aY~aLs~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~ 83 (144)
T PF12968_consen 4 KEVAMAYMALSDAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALR 83 (144)
T ss_dssp HHHHHHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHH
Confidence 4567777777766553 678999999999999998654221 123567888888888 8999999999999999
Q ss_pred HHHhcCC------hHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhH
Q 026767 77 MLEEDDK------EQMAFDLYRAATNVYIKLEKYADAATFLLRWGLAADK 120 (233)
Q Consensus 77 ~~~~~g~------~~~~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~ 120 (233)
+|...|. ..+. .+..+-+..+..+|+.++|+..|+.+.++..+
T Consensus 84 YFNRRGEL~qdeGklWI-aaVfsra~Al~~~Gr~~eA~~~fr~agEMiaE 132 (144)
T PF12968_consen 84 YFNRRGELHQDEGKLWI-AAVFSRAVALEGLGRKEEALKEFRMAGEMIAE 132 (144)
T ss_dssp HHHHH--TTSTHHHHHH-HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH
T ss_pred HHhhccccccccchhHH-HHHHHHHHHHHhcCChHHHHHHHHHHHHHHHH
Confidence 9998773 2233 35667788888999999999999999987654
No 152
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.73 E-value=0.0025 Score=55.42 Aligned_cols=164 Identities=11% Similarity=0.061 Sum_probs=102.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCChHHHH
Q 026767 10 KHMESAAALAKELHNWREVADFYRKASELYNECGRSQPASDALAKAARALE-DAVPEDAIQLYTDACIMLEEDDKEQMAF 88 (233)
Q Consensus 10 ~~~~~~g~~~~~~g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~~~~~~ 88 (233)
..+..+...| ..+++..|+.+-++++++- ... ...|.--|.++. .+++++|+-.|+.|..+.+- .-
T Consensus 302 ~wfV~~~~l~-~~K~~~rAL~~~eK~I~~~----~r~--~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~------rL 368 (564)
T KOG1174|consen 302 HWFVHAQLLY-DEKKFERALNFVEKCIDSE----PRN--HEALILKGRLLIALERHTQAVIAFRTAQMLAPY------RL 368 (564)
T ss_pred hhhhhhhhhh-hhhhHHHHHHHHHHHhccC----ccc--chHHHhccHHHHhccchHHHHHHHHHHHhcchh------hH
Confidence 3344443333 3677888888888887652 122 223444466666 68889998888888877642 12
Q ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHc------------------------------cCcchHHHhHHHHHHHH
Q 026767 89 DLYRAATNVYIKLEKYADAATFLLRWGLAADKC------------------------------NATNSQCKAYLSAIIVY 138 (233)
Q Consensus 89 ~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~------------------------------~~~~~~a~~~~~lg~~~ 138 (233)
.++..+-..|...|++.+|......++..+... ...++-..+-+.++..+
T Consensus 369 ~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~ 448 (564)
T KOG1174|consen 369 EIYRGLFHSYLAQKRFKEANALANWTIRLFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELC 448 (564)
T ss_pred HHHHHHHHHHHhhchHHHHHHHHHHHHHHhhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHH
Confidence 577777788888888888877766655443211 11222233446667777
Q ss_pred HhhCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHH-hcCCHHHHHHHHhhc
Q 026767 139 LYANDFKQAEKCYNDCSQVDAFLRSDQNRCATKLISAY-TEGDVEEIKRVAQSS 191 (233)
Q Consensus 139 ~~~gd~~~A~~~~~~al~~~~~~~~~e~~~l~~L~~a~-~~gd~~~a~~~~~~~ 191 (233)
...|.+..++..+++++.+.. .+.....||+.+ ..+.+..+.++...+
T Consensus 449 ~~Eg~~~D~i~LLe~~L~~~~-----D~~LH~~Lgd~~~A~Ne~Q~am~~y~~A 497 (564)
T KOG1174|consen 449 QVEGPTKDIIKLLEKHLIIFP-----DVNLHNHLGDIMRAQNEPQKAMEYYYKA 497 (564)
T ss_pred HhhCccchHHHHHHHHHhhcc-----ccHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 777888888888887774432 244556677766 566666666666666
No 153
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=97.73 E-value=0.00038 Score=65.92 Aligned_cols=137 Identities=13% Similarity=0.127 Sum_probs=102.9
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--------------HHHcCCchHHH----------------HHHHHHH
Q 026767 7 DAAKHMESAAALAKELHNWREVADFYRKASEL--------------YNECGRSQPAS----------------DALAKAA 56 (233)
Q Consensus 7 ~~a~~~~~~g~~~~~~g~~~eA~~~~~~A~~l--------------~~~~g~~~~~a----------------~~l~~lg 56 (233)
.-|.+|..+|.+|+...+...|..+|++|.++ |-+..+...+- ..+...|
T Consensus 490 ~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG 569 (1238)
T KOG1127|consen 490 SLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRG 569 (1238)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhcc
Confidence 45788999999999988899999999999875 22222222111 2233334
Q ss_pred HHhh-hCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHccCcchHHHhHHHHH
Q 026767 57 RALE-DAVPEDAIQLYTDACIMLEEDDKEQMAFDLYRAATNVYIKLEKYADAATFLLRWGLAADKCNATNSQCKAYLSAI 135 (233)
Q Consensus 57 ~~~~-~g~~~~A~~~~~~Al~~~~~~g~~~~~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg 135 (233)
..|- .+++.+|+.+++.|+...+.. ..+...+|..|.+.|+|..|+..|.++..+ ++..-...+..+
T Consensus 570 ~yyLea~n~h~aV~~fQsALR~dPkD------~n~W~gLGeAY~~sGry~~AlKvF~kAs~L------rP~s~y~~fk~A 637 (1238)
T KOG1127|consen 570 PYYLEAHNLHGAVCEFQSALRTDPKD------YNLWLGLGEAYPESGRYSHALKVFTKASLL------RPLSKYGRFKEA 637 (1238)
T ss_pred ccccCccchhhHHHHHHHHhcCCchh------HHHHHHHHHHHHhcCceehHHHhhhhhHhc------CcHhHHHHHHHH
Confidence 4555 588999999999998776642 357889999999999999999999999865 233334457788
Q ss_pred HHHHhhCCHHHHHHHHHHhh
Q 026767 136 IVYLYANDFKQAEKCYNDCS 155 (233)
Q Consensus 136 ~~~~~~gd~~~A~~~~~~al 155 (233)
.+....|+|.+|+..+++.+
T Consensus 638 ~~ecd~GkYkeald~l~~ii 657 (1238)
T KOG1127|consen 638 VMECDNGKYKEALDALGLII 657 (1238)
T ss_pred HHHHHhhhHHHHHHHHHHHH
Confidence 88889999999999999876
No 154
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=97.72 E-value=0.0011 Score=61.11 Aligned_cols=162 Identities=15% Similarity=0.094 Sum_probs=113.5
Q ss_pred HHHHHHHcCCHHHHHHHHHH------HHHHHHHcCCchHHHHHHHHH------HHHhh-hCCHHHHHHHHHHHHHHHHhc
Q 026767 15 AAALAKELHNWREVADFYRK------ASELYNECGRSQPASDALAKA------ARALE-DAVPEDAIQLYTDACIMLEED 81 (233)
Q Consensus 15 ~g~~~~~~g~~~eA~~~~~~------A~~l~~~~g~~~~~a~~l~~l------g~~~~-~g~~~~A~~~~~~Al~~~~~~ 81 (233)
++.++...|=..+|+.-|++ -+..|...|+...+....... ...|. .||.-.=-.+|++|.+++...
T Consensus 404 laell~slGitksAl~I~Erlemw~~vi~CY~~lg~~~kaeei~~q~lek~~d~~lyc~LGDv~~d~s~yEkawElsn~~ 483 (777)
T KOG1128|consen 404 LAELLLSLGITKSALVIFERLEMWDPVILCYLLLGQHGKAEEINRQELEKDPDPRLYCLLGDVLHDPSLYEKAWELSNYI 483 (777)
T ss_pred HHHHHHHcchHHHHHHHHHhHHHHHHHHHHHHHhcccchHHHHHHHHhcCCCcchhHHHhhhhccChHHHHHHHHHhhhh
Confidence 44455555555555544433 334455566444443333222 33455 577666668899999998865
Q ss_pred CChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHccCcchHHHhHHHHHHHHHhhCCHHHHHHHHHHhhcCCCCC
Q 026767 82 DKEQMAFDLYRAATNVYIKLEKYADAATFLLRWGLAADKCNATNSQCKAYLSAIIVYLYANDFKQAEKCYNDCSQVDAFL 161 (233)
Q Consensus 82 g~~~~~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~gd~~~A~~~~~~al~~~~~~ 161 (233)
. +.+...+|......++|.++.+++++++++ .+..-.+++++|.|.++.+++..|.++|..++...
T Consensus 484 s-----arA~r~~~~~~~~~~~fs~~~~hle~sl~~------nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~--- 549 (777)
T KOG1128|consen 484 S-----ARAQRSLALLILSNKDFSEADKHLERSLEI------NPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLE--- 549 (777)
T ss_pred h-----HHHHHhhccccccchhHHHHHHHHHHHhhc------CccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcC---
Confidence 4 235566777788899999999999999986 34455689999999999999999999999998543
Q ss_pred CchHHHHHHHHHHHH-hcCCHHHHHHHHhhc
Q 026767 162 RSDQNRCATKLISAY-TEGDVEEIKRVAQSS 191 (233)
Q Consensus 162 ~~~e~~~l~~L~~a~-~~gd~~~a~~~~~~~ 191 (233)
...+...++|..+| ..++-.++...++++
T Consensus 550 -Pd~~eaWnNls~ayi~~~~k~ra~~~l~EA 579 (777)
T KOG1128|consen 550 -PDNAEAWNNLSTAYIRLKKKKRAFRKLKEA 579 (777)
T ss_pred -CCchhhhhhhhHHHHHHhhhHHHHHHHHHH
Confidence 22356777888888 778888888777777
No 155
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=97.71 E-value=0.0028 Score=56.00 Aligned_cols=123 Identities=14% Similarity=0.033 Sum_probs=92.3
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHH
Q 026767 15 AAALAKELHNWREVADFYRKASELYNECGRSQPASDALAKAARALE-DAVPEDAIQLYTDACIMLEEDDKEQMAFDLYRA 93 (233)
Q Consensus 15 ~g~~~~~~g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~~~~~~~~l~~ 93 (233)
.+..+...|.+++|...++. ++. +..+-...+.-.+.++. .++.++|++.+++++.+.+... ....+
T Consensus 312 ~A~~~~~~~~~d~A~~~l~~---L~~---~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~------~l~~~ 379 (484)
T COG4783 312 RALQTYLAGQYDEALKLLQP---LIA---AQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSP------LLQLN 379 (484)
T ss_pred HHHHHHHhcccchHHHHHHH---HHH---hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcc------HHHHH
Confidence 34445556777777777766 222 22244556667788888 7999999999999999988652 35678
Q ss_pred HHHHHHHhccHHHHHHHHHHHHHHHhHccCcchHHHhHHHHHHHHHhhCCHHHHHHHHHHhh
Q 026767 94 ATNVYIKLEKYADAATFLLRWGLAADKCNATNSQCKAYLSAIIVYLYANDFKQAEKCYNDCS 155 (233)
Q Consensus 94 lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~gd~~~A~~~~~~al 155 (233)
+|.++.+.|++.+|+..+.+.+. ..+.....|..++.+|-.+|+-.+|...+-+.+
T Consensus 380 ~a~all~~g~~~eai~~L~~~~~------~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~ 435 (484)
T COG4783 380 LAQALLKGGKPQEAIRILNRYLF------NDPEDPNGWDLLAQAYAELGNRAEALLARAEGY 435 (484)
T ss_pred HHHHHHhcCChHHHHHHHHHHhh------cCCCCchHHHHHHHHHHHhCchHHHHHHHHHHH
Confidence 99999999999999999988763 233444567888899999998888888777664
No 156
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.68 E-value=0.00015 Score=46.85 Aligned_cols=53 Identities=19% Similarity=0.194 Sum_probs=43.5
Q ss_pred HHHhccHHHHHHHHHHHHHHHhHccCcchHHHhHHHHHHHHHhhCCHHHHHHHHHHhhc
Q 026767 98 YIKLEKYADAATFLLRWGLAADKCNATNSQCKAYLSAIIVYLYANDFKQAEKCYNDCSQ 156 (233)
Q Consensus 98 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~gd~~~A~~~~~~al~ 156 (233)
++..|+|++|+.+|++++... +....++..++.|+...|++++|...+++++.
T Consensus 1 ll~~~~~~~A~~~~~~~l~~~------p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~ 53 (68)
T PF14559_consen 1 LLKQGDYDEAIELLEKALQRN------PDNPEARLLLAQCYLKQGQYDEAEELLERLLK 53 (68)
T ss_dssp HHHTTHHHHHHHHHHHHHHHT------TTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHG
T ss_pred ChhccCHHHHHHHHHHHHHHC------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 357899999999999998752 33455778999999999999999999999873
No 157
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.68 E-value=0.00016 Score=47.43 Aligned_cols=57 Identities=14% Similarity=0.195 Sum_probs=48.7
Q ss_pred HHHHHHhccHHHHHHHHHHHHHHHhHccCcchHHHhHHHHHHHHHhhCCHHHHHHHHHHhhcC
Q 026767 95 TNVYIKLEKYADAATFLLRWGLAADKCNATNSQCKAYLSAIIVYLYANDFKQAEKCYNDCSQV 157 (233)
Q Consensus 95 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~gd~~~A~~~~~~al~~ 157 (233)
..+|.+.++|++|++++++++.+. +.....+...|.++..+|++.+|.+.|++++..
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~------p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~ 58 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELD------PDDPELWLQRARCLFQLGRYEEALEDLERALEL 58 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhC------cccchhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 567889999999999999999762 334567889999999999999999999999844
No 158
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=97.67 E-value=0.023 Score=47.16 Aligned_cols=192 Identities=10% Similarity=0.036 Sum_probs=127.6
Q ss_pred CChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh-h-CCHHHHHHHHHHHHHHHHh
Q 026767 3 SSPWDAAKHMESAAALAKELHNWREVADFYRKASELYNECGRSQPASDALAKAARALE-D-AVPEDAIQLYTDACIMLEE 80 (233)
Q Consensus 3 ~~~~~~a~~~~~~g~~~~~~g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~-~-g~~~~A~~~~~~Al~~~~~ 80 (233)
+.+..+...+.+.+.++.+.+++.-|.++..--++.|.+.+....... ..++..++. . ..-++-..+..+|+.+.+.
T Consensus 4 kky~eAidLL~~Ga~~ll~~~Q~~sg~DL~~lliev~~~~~~~~~~~~-~~rl~~l~~~~~~~~p~r~~fi~~ai~WS~~ 82 (260)
T PF04190_consen 4 KKYDEAIDLLYSGALILLKHGQYGSGADLALLLIEVYEKSEDPVDEES-IARLIELISLFPPEEPERKKFIKAAIKWSKF 82 (260)
T ss_dssp T-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT---SHHH-HHHHHHHHHHS-TT-TTHHHHHHHHHHHHHT
T ss_pred ccHHHHHHHHHHHHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHH-HHHHHHHHHhCCCCcchHHHHHHHHHHHHcc
Confidence 345677777888888888888888888888888888888777765543 467777766 3 3333466788889999855
Q ss_pred cCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHH-----------HHHHhHccCcchHHHhHHHHHHHHHhhCCHHHHHH
Q 026767 81 DDKEQMAFDLYRAATNVYIKLEKYADAATFLLRW-----------GLAADKCNATNSQCKAYLSAIIVYLYANDFKQAEK 149 (233)
Q Consensus 81 ~g~~~~~~~~l~~lg~~~~~~g~~~~A~~~~~~a-----------l~~~~~~~~~~~~a~~~~~lg~~~~~~gd~~~A~~ 149 (233)
.+.+.+-...+..+|..+.+.|+|.+|..+|-.+ +......+.+.....-.....+-|+..++...|..
T Consensus 83 ~~~~~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~~~~~~~~ll~~~~~~~~~~e~dlfi~RaVL~yL~l~n~~~A~~ 162 (260)
T PF04190_consen 83 GSYKFGDPELHHLLAEKLWKEGNYYEAERHFLLGTDPSAFAYVMLLEEWSTKGYPSEADLFIARAVLQYLCLGNLRDANE 162 (260)
T ss_dssp SS-TT--HHHHHHHHHHHHHTT-HHHHHHHHHTS-HHHHHHHHHHHHHHHHHTSS--HHHHHHHHHHHHHHTTBHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHhcCChhHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhcCHHHHHH
Confidence 5566777789999999999999999999998442 11111223333333333677778899999999999
Q ss_pred HHHHhhcC-----CC--------CCCchHHHHHHHHHHHHhcCCHHHHHHHHhhc--cccc
Q 026767 150 CYNDCSQV-----DA--------FLRSDQNRCATKLISAYTEGDVEEIKRVAQSS--AISN 195 (233)
Q Consensus 150 ~~~~al~~-----~~--------~~~~~e~~~l~~L~~a~~~gd~~~a~~~~~~~--~~~~ 195 (233)
.+...... +. +....--.++.-|..+++.++.+.+...++.| .+++
T Consensus 163 ~~~~f~~~~~~~~p~~~~~~~~~~~~~PllnF~~lLl~t~e~~~~~~F~~L~~~Y~~~L~r 223 (260)
T PF04190_consen 163 LFDTFTSKLIESHPKLENSDIEYPPSYPLLNFLQLLLLTCERDNLPLFKKLCEKYKPSLKR 223 (260)
T ss_dssp HHHHHHHHHHHH---EEEEEEEEESS-HHHHHHHHHHHHHHHT-HHHHHHHHHHTHH---H
T ss_pred HHHHHHHHHhccCcchhccccCCCCCCchHHHHHHHHHHHhcCcHHHHHHHHHHhCccccc
Confidence 88777622 21 22345567888888899889999999999999 5544
No 159
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=97.67 E-value=0.0017 Score=52.37 Aligned_cols=99 Identities=12% Similarity=0.075 Sum_probs=81.5
Q ss_pred CCHHHHHHHHHHHHHHHHhcC-ChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHc----c---CcchHHHhHHH
Q 026767 62 AVPEDAIQLYTDACIMLEEDD-KEQMAFDLYRAATNVYIKLEKYADAATFLLRWGLAADKC----N---ATNSQCKAYLS 133 (233)
Q Consensus 62 g~~~~A~~~~~~Al~~~~~~g-~~~~~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~----~---~~~~~a~~~~~ 133 (233)
..+++|++.|.-|+-.+.-.+ +....+.+..+++++|..+|+.+.-..++++|++.+.+. . ..-.....++-
T Consensus 91 Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YL 170 (214)
T PF09986_consen 91 RTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYL 170 (214)
T ss_pred CCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHH
Confidence 478999999999999988666 566677899999999999999888888888888777643 1 22345677899
Q ss_pred HHHHHHhhCCHHHHHHHHHHhhcCCCC
Q 026767 134 AIIVYLYANDFKQAEKCYNDCSQVDAF 160 (233)
Q Consensus 134 lg~~~~~~gd~~~A~~~~~~al~~~~~ 160 (233)
+|.++.+.|++++|.+.|.+.+.....
T Consensus 171 igeL~rrlg~~~eA~~~fs~vi~~~~~ 197 (214)
T PF09986_consen 171 IGELNRRLGNYDEAKRWFSRVIGSKKA 197 (214)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHcCCCC
Confidence 999999999999999999999866544
No 160
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=97.66 E-value=0.0032 Score=49.24 Aligned_cols=111 Identities=13% Similarity=0.038 Sum_probs=90.2
Q ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCC
Q 026767 5 PWDAAKHMESAAALAKELHNWREVADFYRKASELYNECGRSQPASDALAKAARALE-DAVPEDAIQLYTDACIMLEEDDK 83 (233)
Q Consensus 5 ~~~~a~~~~~~g~~~~~~g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~ 83 (233)
..+...++..+|..|.+.|+.++|+.+|.++.+. .-.+......+.++-.+.. .+++.....+..+|-.+....|+
T Consensus 32 kesir~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~---~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d 108 (177)
T PF10602_consen 32 KESIRMALEDLADHYCKIGDLEEALKAYSRARDY---CTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGD 108 (177)
T ss_pred hHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhh---cCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccch
Confidence 3456788999999999999999999999997664 4445556666666666666 89999999999999999999887
Q ss_pred hHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Q 026767 84 EQMAFDLYRAATNVYIKLEKYADAATFLLRWGLAA 118 (233)
Q Consensus 84 ~~~~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~ 118 (233)
+......-.--|..++..++|.+|...|-.+..-+
T Consensus 109 ~~~~nrlk~~~gL~~l~~r~f~~AA~~fl~~~~t~ 143 (177)
T PF10602_consen 109 WERRNRLKVYEGLANLAQRDFKEAAELFLDSLSTF 143 (177)
T ss_pred HHHHHHHHHHHHHHHHHhchHHHHHHHHHccCcCC
Confidence 66666556666777888999999999998887554
No 161
>PLN02789 farnesyltranstransferase
Probab=97.64 E-value=0.0058 Score=52.33 Aligned_cols=96 Identities=9% Similarity=0.026 Sum_probs=50.5
Q ss_pred HHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh-hCCH--HHHHHHHHHHHHHHHhcCCh
Q 026767 9 AKHMESAAALAKELH-NWREVADFYRKASELYNECGRSQPASDALAKAARALE-DAVP--EDAIQLYTDACIMLEEDDKE 84 (233)
Q Consensus 9 a~~~~~~g~~~~~~g-~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~-~g~~--~~A~~~~~~Al~~~~~~g~~ 84 (233)
..++..-+.++..++ ++++++.++++++.... .-..+++..+.++. .|+. ++++.++.+++++....
T Consensus 71 ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~np------knyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~dpkN--- 141 (320)
T PLN02789 71 YTVWHFRRLCLEALDADLEEELDFAEDVAEDNP------KNYQIWHHRRWLAEKLGPDAANKELEFTRKILSLDAKN--- 141 (320)
T ss_pred HHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCC------cchHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhCccc---
Confidence 356777777777777 57888888888886521 11223444444444 3331 34455555554433321
Q ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Q 026767 85 QMAFDLYRAATNVYIKLEKYADAATFLLRWGL 116 (233)
Q Consensus 85 ~~~~~~l~~lg~~~~~~g~~~~A~~~~~~al~ 116 (233)
..++...+.++..+|+|++|++++.++++
T Consensus 142 ---y~AW~~R~w~l~~l~~~~eeL~~~~~~I~ 170 (320)
T PLN02789 142 ---YHAWSHRQWVLRTLGGWEDELEYCHQLLE 170 (320)
T ss_pred ---HHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 12444444555555555555555555444
No 162
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.63 E-value=0.0046 Score=55.84 Aligned_cols=87 Identities=15% Similarity=0.133 Sum_probs=62.9
Q ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHc---cCcc------hHHHhHHHHHHHHHhhCCHHHHHHHHHHhhcCC
Q 026767 88 FDLYRAATNVYIKLEKYADAATFLLRWGLAADKC---NATN------SQCKAYLSAIIVYLYANDFKQAEKCYNDCSQVD 158 (233)
Q Consensus 88 ~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~---~~~~------~~a~~~~~lg~~~~~~gd~~~A~~~~~~al~~~ 158 (233)
...++|.+.+++..|+|++|++.++.|+.++++. ++.. ....+..-++.|+..+|+..+|...|...+...
T Consensus 175 yel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~ 254 (652)
T KOG2376|consen 175 YELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRN 254 (652)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhc
Confidence 3578899999999999999999999999888753 2221 234556788899999999999999999887332
Q ss_pred CCCCchHHHHHHHHHH
Q 026767 159 AFLRSDQNRCATKLIS 174 (233)
Q Consensus 159 ~~~~~~e~~~l~~L~~ 174 (233)
--+.+-.+.+.++|..
T Consensus 255 ~~D~~~~Av~~NNLva 270 (652)
T KOG2376|consen 255 PADEPSLAVAVNNLVA 270 (652)
T ss_pred CCCchHHHHHhcchhh
Confidence 2222333444444443
No 163
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.63 E-value=0.00077 Score=55.43 Aligned_cols=98 Identities=15% Similarity=0.014 Sum_probs=73.4
Q ss_pred HHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHccCcchHHHh
Q 026767 52 LAKAARALE-DAVPEDAIQLYTDACIMLEEDDKEQMAFDLYRAATNVYIKLEKYADAATFLLRWGLAADKCNATNSQCKA 130 (233)
Q Consensus 52 l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~~~~~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~ 130 (233)
+.+.|.-+. .|+|..|..-|..=+.-|+..-. ...++..||.++..+|+|++|...|..+.. ..+..+....+
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~---~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k---~~P~s~KApda 217 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTY---TPNAYYWLGESLYAQGDYEDAAYIFARVVK---DYPKSPKAPDA 217 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcc---cchhHHHHHHHHHhcccchHHHHHHHHHHH---hCCCCCCChHH
Confidence 455555555 68888888888888777776543 345788888888888888888888887765 44445555567
Q ss_pred HHHHHHHHHhhCCHHHHHHHHHHhh
Q 026767 131 YLSAIIVYLYANDFKQAEKCYNDCS 155 (233)
Q Consensus 131 ~~~lg~~~~~~gd~~~A~~~~~~al 155 (233)
++.+|.+...+|+.++|...|++.+
T Consensus 218 llKlg~~~~~l~~~d~A~atl~qv~ 242 (262)
T COG1729 218 LLKLGVSLGRLGNTDEACATLQQVI 242 (262)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 8888888888888888888888876
No 164
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=97.61 E-value=0.0066 Score=59.74 Aligned_cols=192 Identities=16% Similarity=0.131 Sum_probs=135.8
Q ss_pred CChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH--HHcCCchHHHHHHHHHHHHhhhCCHHHHHHHHHHHHHHHHh
Q 026767 3 SSPWDAAKHMESAAALAKELHNWREVADFYRKASELY--NECGRSQPASDALAKAARALEDAVPEDAIQLYTDACIMLEE 80 (233)
Q Consensus 3 ~~~~~~a~~~~~~g~~~~~~g~~~eA~~~~~~A~~l~--~~~g~~~~~a~~l~~lg~~~~~g~~~~A~~~~~~Al~~~~~ 80 (233)
++|.++.....-++... +.++.++|....++|+... ++-........+|.|+=..| |.-+.-.+.|+||+.+...
T Consensus 1453 ssPNSSi~WI~YMaf~L-elsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~y--G~eesl~kVFeRAcqycd~ 1529 (1710)
T KOG1070|consen 1453 SSPNSSILWIRYMAFHL-ELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAY--GTEESLKKVFERACQYCDA 1529 (1710)
T ss_pred cCCCcchHHHHHHHHHh-hhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhh--CcHHHHHHHHHHHHHhcch
Confidence 34444444444454444 4889999999999998764 22222223333344433332 5556667889999888763
Q ss_pred cCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHccCcchHHHhHHHHHHHHHhhCCHHHHHHHHHHhh-cCCC
Q 026767 81 DDKEQMAFDLYRAATNVYIKLEKYADAATFLLRWGLAADKCNATNSQCKAYLSAIIVYLYANDFKQAEKCYNDCS-QVDA 159 (233)
Q Consensus 81 ~g~~~~~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~gd~~~A~~~~~~al-~~~~ 159 (233)
..++..|..+|...+++++|.++|++.++-++ ..-.+|...+...+.+.+-..|...+.+|+ .++.
T Consensus 1530 -------~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~------q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk 1596 (1710)
T KOG1070|consen 1530 -------YTVHLKLLGIYEKSEKNDEADELLRLMLKKFG------QTRKVWIMYADFLLRQNEAEAARELLKRALKSLPK 1596 (1710)
T ss_pred -------HHHHHHHHHHHHHhhcchhHHHHHHHHHHHhc------chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcch
Confidence 46889999999999999999999999887654 223567888889999999999999999998 4453
Q ss_pred CCCchHHHHHHHHHHHH-hcCCHHHHHHHHhhc---ccccchHHHHHHhccCCCCchh
Q 026767 160 FLRSDQNRCATKLISAY-TEGDVEEIKRVAQSS---AISNLDHVIIKLARKLPTGDVS 213 (233)
Q Consensus 160 ~~~~~e~~~l~~L~~a~-~~gd~~~a~~~~~~~---~~~~ld~~~~~l~~~l~~~~~~ 213 (233)
.+.-.++...+..- ..||.++.+..|+.- .=.+.|-|-+=|-.-++.|++.
T Consensus 1597 ---~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~ 1651 (1710)
T KOG1070|consen 1597 ---QEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIK 1651 (1710)
T ss_pred ---hhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHH
Confidence 23345667777654 889999999999988 3447888966666666666554
No 165
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.61 E-value=0.0031 Score=47.30 Aligned_cols=113 Identities=17% Similarity=0.161 Sum_probs=58.3
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHH
Q 026767 14 SAAALAKELHNWREVADFYRKASELYNECGRSQPASDALAKAARALEDAVPEDAIQLYTDACIMLEEDDKEQMAFDLYRA 93 (233)
Q Consensus 14 ~~g~~~~~~g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~~g~~~~A~~~~~~Al~~~~~~g~~~~~~~~l~~ 93 (233)
..|......++...+++.+++++.+|+ |++...... ..=.......+++. -..++..
T Consensus 11 ~~a~~~~~~~~~~~~~~~~~~al~ly~--G~~l~~~~~---------~~W~~~~r~~l~~~------------~~~~~~~ 67 (146)
T PF03704_consen 11 REARAAARAGDPEEAIELLEEALALYR--GDFLPDLDD---------EEWVEPERERLREL------------YLDALER 67 (146)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHTT----SSTTGGGTT---------STTHHHHHHHHHHH------------HHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHhC--CCCCCCCCc---------cHHHHHHHHHHHHH------------HHHHHHH
Confidence 335555567888889999999998886 444211000 00001111111111 1235556
Q ss_pred HHHHHHHhccHHHHHHHHHHHHHHHhHccCcchHHHhHHHHHHHHHhhCCHHHHHHHHHHhh
Q 026767 94 ATNVYIKLEKYADAATFLLRWGLAADKCNATNSQCKAYLSAIIVYLYANDFKQAEKCYNDCS 155 (233)
Q Consensus 94 lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~gd~~~A~~~~~~al 155 (233)
++..+...|++++|+..+++++.+ ++..+. .+..+..+|..+|++..|.+.|+++.
T Consensus 68 l~~~~~~~~~~~~a~~~~~~~l~~-----dP~~E~-~~~~lm~~~~~~g~~~~A~~~Y~~~~ 123 (146)
T PF03704_consen 68 LAEALLEAGDYEEALRLLQRALAL-----DPYDEE-AYRLLMRALAAQGRRAEALRVYERYR 123 (146)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHHH-----STT-HH-HHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHhccCHHHHHHHHHHHHhc-----CCCCHH-HHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 666666666666666666666654 333332 45566666666666666666666664
No 166
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.59 E-value=0.0027 Score=55.77 Aligned_cols=124 Identities=14% Similarity=0.091 Sum_probs=94.9
Q ss_pred Hhh-hCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHccCcchHHHhHHHHHH
Q 026767 58 ALE-DAVPEDAIQLYTDACIMLEEDDKEQMAFDLYRAATNVYIKLEKYADAATFLLRWGLAADKCNATNSQCKAYLSAII 136 (233)
Q Consensus 58 ~~~-~g~~~~A~~~~~~Al~~~~~~g~~~~~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~ 136 (233)
++. .++++.|++.+++-.+-.+ .+..-++.++...++..+|+..+.+++... +..+..+...+.
T Consensus 178 ~l~~t~~~~~ai~lle~L~~~~p---------ev~~~LA~v~l~~~~E~~AI~ll~~aL~~~------p~d~~LL~~Qa~ 242 (395)
T PF09295_consen 178 YLSLTQRYDEAIELLEKLRERDP---------EVAVLLARVYLLMNEEVEAIRLLNEALKEN------PQDSELLNLQAE 242 (395)
T ss_pred HHhhcccHHHHHHHHHHHHhcCC---------cHHHHHHHHHHhcCcHHHHHHHHHHHHHhC------CCCHHHHHHHHH
Confidence 344 4888888888887554432 234458999999999999999999999431 222566788889
Q ss_pred HHHhhCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHH-hcCCHHHHHHHHhhc-ccccchHHH
Q 026767 137 VYLYANDFKQAEKCYNDCSQVDAFLRSDQNRCATKLISAY-TEGDVEEIKRVAQSS-AISNLDHVI 200 (233)
Q Consensus 137 ~~~~~gd~~~A~~~~~~al~~~~~~~~~e~~~l~~L~~a~-~~gd~~~a~~~~~~~-~~~~ld~~~ 200 (233)
.++..++++.|++..++++.+. +.+......|+.+| ..||++.|..+++.. .+..-+...
T Consensus 243 fLl~k~~~~lAL~iAk~av~ls----P~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm~~~~~k~~ 304 (395)
T PF09295_consen 243 FLLSKKKYELALEIAKKAVELS----PSEFETWYQLAECYIQLGDFENALLALNSCPMLTYKDKYK 304 (395)
T ss_pred HHHhcCCHHHHHHHHHHHHHhC----chhHHHHHHHHHHHHhcCCHHHHHHHHhcCcCCCCccchh
Confidence 9999999999999999998554 34567778899999 899999999999987 654444333
No 167
>PRK15331 chaperone protein SicA; Provisional
Probab=97.58 E-value=0.0018 Score=49.53 Aligned_cols=97 Identities=15% Similarity=0.040 Sum_probs=76.2
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCChHH
Q 026767 8 AAKHMESAAALAKELHNWREVADFYRKASELYNECGRSQPASDALAKAARALE-DAVPEDAIQLYTDACIMLEEDDKEQM 86 (233)
Q Consensus 8 ~a~~~~~~g~~~~~~g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~~~~ 86 (233)
.-+.....|.-+.+.|++++|...|+-...+ |+. ..+-+..+|.++. .++|++|+..|..|..+-.....
T Consensus 36 ~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~-----d~~-n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~--- 106 (165)
T PRK15331 36 MMDGLYAHAYEFYNQGRLDEAETFFRFLCIY-----DFY-NPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYR--- 106 (165)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-----CcC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCC---
Confidence 3344555555566799999999988765542 121 2456889999999 89999999999999998765443
Q ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Q 026767 87 AFDLYRAATNVYIKLEKYADAATFLLRWGL 116 (233)
Q Consensus 87 ~~~~l~~lg~~~~~~g~~~~A~~~~~~al~ 116 (233)
.....|.+++.+|+...|..+|+.+++
T Consensus 107 ---p~f~agqC~l~l~~~~~A~~~f~~a~~ 133 (165)
T PRK15331 107 ---PVFFTGQCQLLMRKAAKARQCFELVNE 133 (165)
T ss_pred ---ccchHHHHHHHhCCHHHHHHHHHHHHh
Confidence 366899999999999999999999987
No 168
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=97.57 E-value=0.0018 Score=53.35 Aligned_cols=91 Identities=13% Similarity=0.040 Sum_probs=82.2
Q ss_pred CHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHccCcchHHHhHHHHHHHHHhhC
Q 026767 63 VPEDAIQLYTDACIMLEEDDKEQMAFDLYRAATNVYIKLEKYADAATFLLRWGLAADKCNATNSQCKAYLSAIIVYLYAN 142 (233)
Q Consensus 63 ~~~~A~~~~~~Al~~~~~~g~~~~~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g 142 (233)
.....|+.+.+|++.|...+..+....+...+|..|...|+|++|+.+|+.+...+++.|.......++..+..|+...|
T Consensus 153 hs~~iI~lL~~A~~~f~~~~~~R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~ 232 (247)
T PF11817_consen 153 HSKLIIELLEKAYEQFKKYGQNRMASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLG 232 (247)
T ss_pred hHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhC
Confidence 34567999999999999999999999999999999999999999999999999999999998888889999999999999
Q ss_pred CHHHHHHHHHH
Q 026767 143 DFKQAEKCYND 153 (233)
Q Consensus 143 d~~~A~~~~~~ 153 (233)
|.+......-+
T Consensus 233 ~~~~~l~~~le 243 (247)
T PF11817_consen 233 DVEDYLTTSLE 243 (247)
T ss_pred CHHHHHHHHHH
Confidence 99887765543
No 169
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.57 E-value=0.0014 Score=56.95 Aligned_cols=134 Identities=12% Similarity=-0.008 Sum_probs=90.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHH--------------HHcCCch--------------HHHHHHHHHH-HHhh-
Q 026767 11 HMESAAALAKELHNWREVADFYRKASELY--------------NECGRSQ--------------PASDALAKAA-RALE- 60 (233)
Q Consensus 11 ~~~~~g~~~~~~g~~~eA~~~~~~A~~l~--------------~~~g~~~--------------~~a~~l~~lg-~~~~- 60 (233)
+|.-=|+++.+.+++++|+-.|+.|..+. ...|+.. ..|+++.-+| .++.
T Consensus 336 alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~~sA~~LtL~g~~V~~~ 415 (564)
T KOG1174|consen 336 ALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRLFQNSARSLTLFGTLVLFP 415 (564)
T ss_pred HHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhhcchhhhhhhcceeecc
Confidence 44444566666667776666666665542 1222221 1233333343 2333
Q ss_pred h-CCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHccCcchHHHhHHHHHHHHH
Q 026767 61 D-AVPEDAIQLYTDACIMLEEDDKEQMAFDLYRAATNVYIKLEKYADAATFLLRWGLAADKCNATNSQCKAYLSAIIVYL 139 (233)
Q Consensus 61 ~-g~~~~A~~~~~~Al~~~~~~g~~~~~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~ 139 (233)
. .--++|-.+|++++.+-+. . ..+...+++++..-|++..++.++++.+..+-+ ...+..+|.+..
T Consensus 416 dp~~rEKAKkf~ek~L~~~P~-----Y-~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D-------~~LH~~Lgd~~~ 482 (564)
T KOG1174|consen 416 DPRMREKAKKFAEKSLKINPI-----Y-TPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPD-------VNLHNHLGDIMR 482 (564)
T ss_pred CchhHHHHHHHHHhhhccCCc-----c-HHHHHHHHHHHHhhCccchHHHHHHHHHhhccc-------cHHHHHHHHHHH
Confidence 2 3346778888888766542 1 236678999999999999999999999976533 235688999999
Q ss_pred hhCCHHHHHHHHHHhhcC
Q 026767 140 YANDFKQAEKCYNDCSQV 157 (233)
Q Consensus 140 ~~gd~~~A~~~~~~al~~ 157 (233)
+...+.+|..+|..++.+
T Consensus 483 A~Ne~Q~am~~y~~ALr~ 500 (564)
T KOG1174|consen 483 AQNEPQKAMEYYYKALRQ 500 (564)
T ss_pred HhhhHHHHHHHHHHHHhc
Confidence 999999999999999944
No 170
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.56 E-value=0.00033 Score=45.96 Aligned_cols=57 Identities=18% Similarity=0.156 Sum_probs=45.7
Q ss_pred HHHhh-hCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Q 026767 56 ARALE-DAVPEDAIQLYTDACIMLEEDDKEQMAFDLYRAATNVYIKLEKYADAATFLLRWGLAA 118 (233)
Q Consensus 56 g~~~~-~g~~~~A~~~~~~Al~~~~~~g~~~~~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~ 118 (233)
..+|. .+++++|++++++++.+.+.. ...+...|.++..+|++.+|+..|+++++..
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~------~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~ 59 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDD------PELWLQRARCLFQLGRYEEALEDLERALELS 59 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCccc------chhhHHHHHHHHHhccHHHHHHHHHHHHHHC
Confidence 34566 688999999999999887762 2467788999999999999999999988653
No 171
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.55 E-value=0.024 Score=44.61 Aligned_cols=101 Identities=14% Similarity=-0.026 Sum_probs=55.6
Q ss_pred HHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHccCcc
Q 026767 47 PASDALAKAARALE-DAVPEDAIQLYTDACIMLEEDDKEQMAFDLYRAATNVYIKLEKYADAATFLLRWGLAADKCNATN 125 (233)
Q Consensus 47 ~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~~~~~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 125 (233)
-+......++..+. .+++++|+..++.++..-.+. ..-..+-.+++.+.+.+|.+++|+..+.... ...
T Consensus 87 Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De---~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~-------~~~ 156 (207)
T COG2976 87 YAVLAALELAKAEVEANNLDKAEAQLKQALAQTKDE---NLKALAALRLARVQLQQKKADAALKTLDTIK-------EES 156 (207)
T ss_pred HHHHHHHHHHHHHHhhccHHHHHHHHHHHHccchhH---HHHHHHHHHHHHHHHHhhhHHHHHHHHhccc-------ccc
Confidence 33334444455555 466777766666666433322 2223344566677777777777666554322 222
Q ss_pred hHHHhHHHHHHHHHhhCCHHHHHHHHHHhhcC
Q 026767 126 SQCKAYLSAIIVYLYANDFKQAEKCYNDCSQV 157 (233)
Q Consensus 126 ~~a~~~~~lg~~~~~~gd~~~A~~~~~~al~~ 157 (233)
..+......|.+++..||-++|+..|++++..
T Consensus 157 w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~ 188 (207)
T COG2976 157 WAAIVAELRGDILLAKGDKQEARAAYEKALES 188 (207)
T ss_pred HHHHHHHHhhhHHHHcCchHHHHHHHHHHHHc
Confidence 23333455666777777777777777776633
No 172
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=97.54 E-value=0.013 Score=49.93 Aligned_cols=145 Identities=17% Similarity=0.078 Sum_probs=104.9
Q ss_pred HHHHHHHHcCCchHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHH
Q 026767 34 KASELYNECGRSQPASDALAKAARALE-DAVPEDAIQLYTDACIMLEEDDKEQMAFDLYRAATNVYIKLEKYADAATFLL 112 (233)
Q Consensus 34 ~A~~l~~~~g~~~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~~~~~~~~l~~lg~~~~~~g~~~~A~~~~~ 112 (233)
-.++.....+++. .+.-...+|.-+. .|++..|+.+|..|++.-+. -..++.+-|.+|+.+|+-.-|+.-+.
T Consensus 24 ~~~e~a~~~~~~a-dvekhlElGk~lla~~Q~sDALt~yHaAve~dp~------~Y~aifrRaT~yLAmGksk~al~Dl~ 96 (504)
T KOG0624|consen 24 LFLEGAESTASPA-DVEKHLELGKELLARGQLSDALTHYHAAVEGDPN------NYQAIFRRATVYLAMGKSKAALQDLS 96 (504)
T ss_pred HHHHHHHhcCCHH-HHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCch------hHHHHHHHHHHHhhhcCCccchhhHH
Confidence 3333344445543 4444667788777 89999999999999976553 23578888999999999999999999
Q ss_pred HHHHHHhHccCcchHHHhHHHHHHHHHhhCCHHHHHHHHHHhhcC-CCCC----------CchHHHHHH-HHHHHHhcCC
Q 026767 113 RWGLAADKCNATNSQCKAYLSAIIVYLYANDFKQAEKCYNDCSQV-DAFL----------RSDQNRCAT-KLISAYTEGD 180 (233)
Q Consensus 113 ~al~~~~~~~~~~~~a~~~~~lg~~~~~~gd~~~A~~~~~~al~~-~~~~----------~~~e~~~l~-~L~~a~~~gd 180 (233)
+.+++ .+.-..+...-|.+++++|++++|..-|...+.. +.-. ...|...+. .+..++..||
T Consensus 97 rVlel------KpDF~~ARiQRg~vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD 170 (504)
T KOG0624|consen 97 RVLEL------KPDFMAARIQRGVVLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGD 170 (504)
T ss_pred HHHhc------CccHHHHHHHhchhhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCc
Confidence 99875 3333445678899999999999999999999843 3221 234444444 4445668899
Q ss_pred HHHHHHHHhhc
Q 026767 181 VEEIKRVAQSS 191 (233)
Q Consensus 181 ~~~a~~~~~~~ 191 (233)
...+.+++..-
T Consensus 171 ~~~ai~~i~~l 181 (504)
T KOG0624|consen 171 CQNAIEMITHL 181 (504)
T ss_pred hhhHHHHHHHH
Confidence 99888887766
No 173
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=97.53 E-value=0.003 Score=57.41 Aligned_cols=134 Identities=15% Similarity=0.046 Sum_probs=102.0
Q ss_pred chHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHccC
Q 026767 45 SQPASDALAKAARALE-DAVPEDAIQLYTDACIMLEEDDKEQMAFDLYRAATNVYIKLEKYADAATFLLRWGLAADKCNA 123 (233)
Q Consensus 45 ~~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~~~~~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~ 123 (233)
+....+++.-++..|. .|++++|+++..+|++.-+. ..+.+..-|.++-..|++.+|.+.++.|..+ +..+
T Consensus 190 p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt------~~ely~~KarilKh~G~~~~Aa~~~~~Ar~L--D~~D 261 (517)
T PF12569_consen 190 PSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHTPT------LVELYMTKARILKHAGDLKEAAEAMDEAREL--DLAD 261 (517)
T ss_pred chHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC------cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhC--Chhh
Confidence 4445688899999998 89999999999999988653 3578899999999999999999999999876 3334
Q ss_pred cchHHHhHHHHHHHHHhhCCHHHHHHHHHHhhcCC-C-CC---CchHHHHHHHHHHHH-hcCCHHHHHHHHhh
Q 026767 124 TNSQCKAYLSAIIVYLYANDFKQAEKCYNDCSQVD-A-FL---RSDQNRCATKLISAY-TEGDVEEIKRVAQS 190 (233)
Q Consensus 124 ~~~~a~~~~~lg~~~~~~gd~~~A~~~~~~al~~~-~-~~---~~~e~~~l~~L~~a~-~~gd~~~a~~~~~~ 190 (233)
+... ...+..+++.|+.++|.+.+...-... . .. ..+=..++...|++| +.|+...|...+..
T Consensus 262 RyiN----sK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~ 330 (517)
T PF12569_consen 262 RYIN----SKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHA 330 (517)
T ss_pred HHHH----HHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 4322 456777889999999999988875222 1 11 123344778889999 78998887755443
No 174
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=97.50 E-value=0.0022 Score=54.11 Aligned_cols=151 Identities=18% Similarity=0.176 Sum_probs=93.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCChHHHHHH
Q 026767 12 MESAAALAKELHNWREVADFYRKASELYNECGRSQPASDALAKAARALE-DAVPEDAIQLYTDACIMLEEDDKEQMAFDL 90 (233)
Q Consensus 12 ~~~~g~~~~~~g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~~~~~~~~ 90 (233)
..-.|.++...|++++|+..+.+. ++.. +..-.-.++. .++++.|.+.++..-+ .++. .+
T Consensus 105 ~~~~A~i~~~~~~~~~AL~~l~~~-------~~lE----~~al~Vqi~L~~~R~dlA~k~l~~~~~----~~eD----~~ 165 (290)
T PF04733_consen 105 QLLAATILFHEGDYEEALKLLHKG-------GSLE----LLALAVQILLKMNRPDLAEKELKNMQQ----IDED----SI 165 (290)
T ss_dssp HHHHHHHHCCCCHHHHHHCCCTTT-------TCHH----HHHHHHHHHHHTT-HHHHHHHHHHHHC----CSCC----HH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHcc-------Cccc----HHHHHHHHHHHcCCHHHHHHHHHHHHh----cCCc----HH
Confidence 344556666678888777766542 2222 1112333455 6999999877766443 3332 24
Q ss_pred HHHHHHHHH--Hhc--cHHHHHHHHHHHHHHHhHccCcchHHHhHHHHHHHHHhhCCHHHHHHHHHHhhcCCCCCCchHH
Q 026767 91 YRAATNVYI--KLE--KYADAATFLLRWGLAADKCNATNSQCKAYLSAIIVYLYANDFKQAEKCYNDCSQVDAFLRSDQN 166 (233)
Q Consensus 91 l~~lg~~~~--~~g--~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~gd~~~A~~~~~~al~~~~~~~~~e~ 166 (233)
+.+++..++ ..| ++.+|...|++... +.+. ....++.++.|++.+|+|++|.+.+++++... +...
T Consensus 166 l~qLa~awv~l~~g~e~~~~A~y~f~El~~---~~~~---t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~----~~~~ 235 (290)
T PF04733_consen 166 LTQLAEAWVNLATGGEKYQDAFYIFEELSD---KFGS---TPKLLNGLAVCHLQLGHYEEAEELLEEALEKD----PNDP 235 (290)
T ss_dssp HHHHHHHHHHHHHTTTCCCHHHHHHHHHHC---CS-----SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-----CCHH
T ss_pred HHHHHHHHHHHHhCchhHHHHHHHHHHHHh---ccCC---CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc----cCCH
Confidence 445555443 344 69999999997432 2222 24567899999999999999999999987432 3356
Q ss_pred HHHHHHHHHH-hcCCH-HHHHHHHhhc
Q 026767 167 RCATKLISAY-TEGDV-EEIKRVAQSS 191 (233)
Q Consensus 167 ~~l~~L~~a~-~~gd~-~~a~~~~~~~ 191 (233)
.++.+++-+. ..|+. +.+.+.+.+-
T Consensus 236 d~LaNliv~~~~~gk~~~~~~~~l~qL 262 (290)
T PF04733_consen 236 DTLANLIVCSLHLGKPTEAAERYLSQL 262 (290)
T ss_dssp HHHHHHHHHHHHTT-TCHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhCCChhHHHHHHHHH
Confidence 6777887755 55665 6677777665
No 175
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=97.49 E-value=0.0031 Score=47.28 Aligned_cols=107 Identities=22% Similarity=0.248 Sum_probs=66.8
Q ss_pred HHHhh-hCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHH-HHHHHHHHHHHHHhHccCcchHHHhHHH
Q 026767 56 ARALE-DAVPEDAIQLYTDACIMLEEDDKEQMAFDLYRAATNVYIKLEKYA-DAATFLLRWGLAADKCNATNSQCKAYLS 133 (233)
Q Consensus 56 g~~~~-~g~~~~A~~~~~~Al~~~~~~g~~~~~~~~l~~lg~~~~~~g~~~-~A~~~~~~al~~~~~~~~~~~~a~~~~~ 133 (233)
|.... .++++.++..+++++.+++..--..... ..+- .....+++. ...++..
T Consensus 13 a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~-------------~~W~~~~r~~l~~~------------~~~~~~~ 67 (146)
T PF03704_consen 13 ARAAARAGDPEEAIELLEEALALYRGDFLPDLDD-------------EEWVEPERERLREL------------YLDALER 67 (146)
T ss_dssp HHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTT-------------STTHHHHHHHHHHH------------HHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCc-------------cHHHHHHHHHHHHH------------HHHHHHH
Confidence 44444 5889999999999999998432110000 0111 111222211 1235567
Q ss_pred HHHHHHhhCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHH-hcCCHHHHHHHHhhc
Q 026767 134 AIIVYLYANDFKQAEKCYNDCSQVDAFLRSDQNRCATKLISAY-TEGDVEEIKRVAQSS 191 (233)
Q Consensus 134 lg~~~~~~gd~~~A~~~~~~al~~~~~~~~~e~~~l~~L~~a~-~~gd~~~a~~~~~~~ 191 (233)
++..+...|++.+|...+++++....+ .-.+...|+.++ ..|+...|....++.
T Consensus 68 l~~~~~~~~~~~~a~~~~~~~l~~dP~----~E~~~~~lm~~~~~~g~~~~A~~~Y~~~ 122 (146)
T PF03704_consen 68 LAEALLEAGDYEEALRLLQRALALDPY----DEEAYRLLMRALAAQGRRAEALRVYERY 122 (146)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHHHSTT-----HHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHhccCHHHHHHHHHHHHhcCCC----CHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 888899999999999999999955433 235666778888 899999999999988
No 176
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=97.49 E-value=0.025 Score=53.54 Aligned_cols=183 Identities=14% Similarity=0.022 Sum_probs=119.7
Q ss_pred CChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhc
Q 026767 3 SSPWDAAKHMESAAALAKELHNWREVADFYRKASELYNECGRSQPASDALAKAARALE-DAVPEDAIQLYTDACIMLEED 81 (233)
Q Consensus 3 ~~~~~~a~~~~~~g~~~~~~g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~ 81 (233)
++......++.....++ .|++++|.++.+.++...-..-.. ..+.++..+|.+.. .|++++|+.+..++.++.+..
T Consensus 454 ~~l~ae~~aL~a~val~--~~~~e~a~~lar~al~~L~~~~~~-~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~ 530 (894)
T COG2909 454 GDLLAEFQALRAQVALN--RGDPEEAEDLARLALVQLPEAAYR-SRIVALSVLGEAAHIRGELTQALALMQQAEQMARQH 530 (894)
T ss_pred hhHHHHHHHHHHHHHHh--cCCHHHHHHHHHHHHHhcccccch-hhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHc
Confidence 34444555665555555 699999999999999877554444 56788999999999 899999999999999999999
Q ss_pred CChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHccCcchHH---HhHHHHHHHHHhhCCHHHHHHHHHHhhcCC
Q 026767 82 DKEQMAFDLYRAATNVYIKLEKYADAATFLLRWGLAADKCNATNSQC---KAYLSAIIVYLYANDFKQAEKCYNDCSQVD 158 (233)
Q Consensus 82 g~~~~~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a---~~~~~lg~~~~~~gd~~~A~~~~~~al~~~ 158 (233)
+.......+....+.++..+|+...|...-.....-.+.....+... ..+..+..++. +++.+.......+.+.
T Consensus 531 ~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ll~~~~---r~~~~~~ear~~~~~~ 607 (894)
T COG2909 531 DVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQLLRAWL---RLDLAEAEARLGIEVG 607 (894)
T ss_pred ccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHH---HHhhhhHHhhhcchhh
Confidence 99999888999999999999943333332222221111112222211 22223333333 3556655555554332
Q ss_pred CC---CCchHHHHHHHHHHHH-hcCCHHHHHHHHhhc
Q 026767 159 AF---LRSDQNRCATKLISAY-TEGDVEEIKRVAQSS 191 (233)
Q Consensus 159 ~~---~~~~e~~~l~~L~~a~-~~gd~~~a~~~~~~~ 191 (233)
.. .....+-.+..|++.. ..||.++|-..+.+-
T Consensus 608 ~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~ 644 (894)
T COG2909 608 SVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDEL 644 (894)
T ss_pred hhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 21 1222333445777766 799999998887766
No 177
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=97.48 E-value=0.015 Score=44.42 Aligned_cols=87 Identities=20% Similarity=0.188 Sum_probs=47.4
Q ss_pred hCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHccCcchHHHhHHHHHHHHHh
Q 026767 61 DAVPEDAIQLYTDACIMLEEDDKEQMAFDLYRAATNVYIKLEKYADAATFLLRWGLAADKCNATNSQCKAYLSAIIVYLY 140 (233)
Q Consensus 61 ~g~~~~A~~~~~~Al~~~~~~g~~~~~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~ 140 (233)
.|+++.|+..|.+++.+... .......+...+..+...+++..|+..+.+++...... ....+..++.++..
T Consensus 143 ~~~~~~a~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~ 214 (291)
T COG0457 143 LGDYEEALELYEKALELDPE---LNELAEALLALGALLEALGRYEEALELLEKALKLNPDD-----DAEALLNLGLLYLK 214 (291)
T ss_pred cCCHHHHHHHHHHHHhcCCC---ccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCccc-----chHHHHHhhHHHHH
Confidence 56666666666666331110 01112234444444556666666666666666543221 23445666666666
Q ss_pred hCCHHHHHHHHHHhh
Q 026767 141 ANDFKQAEKCYNDCS 155 (233)
Q Consensus 141 ~gd~~~A~~~~~~al 155 (233)
.+++..|...+..++
T Consensus 215 ~~~~~~a~~~~~~~~ 229 (291)
T COG0457 215 LGKYEEALEYYEKAL 229 (291)
T ss_pred cccHHHHHHHHHHHH
Confidence 666666666666665
No 178
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=97.45 E-value=0.0045 Score=51.02 Aligned_cols=93 Identities=15% Similarity=0.081 Sum_probs=84.6
Q ss_pred CCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHh
Q 026767 23 HNWREVADFYRKASELYNECGRSQPASDALAKAARALE-DAVPEDAIQLYTDACIMLEEDDKEQMAFDLYRAATNVYIKL 101 (233)
Q Consensus 23 g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~~~~~~~~l~~lg~~~~~~ 101 (233)
......++++.+|...|...|.......+...+|.-|. .|++++|+++|+.+...|+..|.......++..+-.++..+
T Consensus 152 ~hs~~iI~lL~~A~~~f~~~~~~R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~ 231 (247)
T PF11817_consen 152 DHSKLIIELLEKAYEQFKKYGQNRMASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRL 231 (247)
T ss_pred chHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHh
Confidence 34567899999999999999999999999999999999 79999999999999999999999999999999999999999
Q ss_pred ccHHHHHHHHHHHH
Q 026767 102 EKYADAATFLLRWG 115 (233)
Q Consensus 102 g~~~~A~~~~~~al 115 (233)
|+.+..+.+.-+.+
T Consensus 232 ~~~~~~l~~~leLl 245 (247)
T PF11817_consen 232 GDVEDYLTTSLELL 245 (247)
T ss_pred CCHHHHHHHHHHHh
Confidence 99999888765443
No 179
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.45 E-value=0.0048 Score=51.65 Aligned_cols=181 Identities=14% Similarity=0.027 Sum_probs=108.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCC-chHHHHHHHHHHH-------HhhhCCHHH---HHHHHHHHHHHH-
Q 026767 11 HMESAAALAKELHNWREVADFYRKASELYNECGR-SQPASDALAKAAR-------ALEDAVPED---AIQLYTDACIML- 78 (233)
Q Consensus 11 ~~~~~g~~~~~~g~~~eA~~~~~~A~~l~~~~g~-~~~~a~~l~~lg~-------~~~~g~~~~---A~~~~~~Al~~~- 78 (233)
.+..+|-+|....+|.+|.+||++-..++-+... ..-.|.++.+.+. +...+|.+. -.--++.|+.+-
T Consensus 46 gLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADALrV~~~~~D~~~L~~~~lqLqaAIkYse 125 (459)
T KOG4340|consen 46 GLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADALRVAFLLLDNPALHSRVLQLQAAIKYSE 125 (459)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHHHHHHHHhcCCHHHHHHHHHHHHHHhccc
Confidence 3556777888888899999999888877644322 2233444444321 111233111 001112222221
Q ss_pred ----------HhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHccCcchHHHhHHHHHHHHHhhCCHHHHH
Q 026767 79 ----------EEDDKEQMAFDLYRAATNVYIKLEKYADAATFLLRWGLAADKCNATNSQCKAYLSAIIVYLYANDFKQAE 148 (233)
Q Consensus 79 ----------~~~g~~~~~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~gd~~~A~ 148 (233)
++.... ..+.++++.|.+..+.|+|+.|++-|+.++.. .|-.+.. -.+++++|...|++..|+
T Consensus 126 ~Dl~g~rsLveQlp~e-n~Ad~~in~gCllykegqyEaAvqkFqaAlqv---sGyqpll---AYniALaHy~~~qyasAL 198 (459)
T KOG4340|consen 126 GDLPGSRSLVEQLPSE-NEADGQINLGCLLYKEGQYEAAVQKFQAALQV---SGYQPLL---AYNLALAHYSSRQYASAL 198 (459)
T ss_pred ccCcchHHHHHhccCC-CccchhccchheeeccccHHHHHHHHHHHHhh---cCCCchh---HHHHHHHHHhhhhHHHHH
Confidence 111111 23468899999999999999999999999865 2444433 378999999999999999
Q ss_pred HHHHHhh-----cCCCCC-------------CchHHHHHHHHHHH--------HhcCCHHHHHHHHhhc---ccccchH
Q 026767 149 KCYNDCS-----QVDAFL-------------RSDQNRCATKLISA--------YTEGDVEEIKRVAQSS---AISNLDH 198 (233)
Q Consensus 149 ~~~~~al-----~~~~~~-------------~~~e~~~l~~L~~a--------~~~gd~~~a~~~~~~~---~~~~ld~ 198 (233)
++..+.+ ..|.++ +...-.....|.++ |+.+|.+.|++++..- .=..+|+
T Consensus 199 k~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDP 277 (459)
T KOG4340|consen 199 KHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDP 277 (459)
T ss_pred HHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCc
Confidence 9988765 334332 11111122233332 2569999999988765 4445555
No 180
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=97.45 E-value=0.007 Score=56.84 Aligned_cols=143 Identities=17% Similarity=0.177 Sum_probs=89.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH------HHHHcCCchHHHHH--------HHHHHHHhh-h-CCHHHHHHHHHHH-
Q 026767 12 MESAAALAKELHNWREVADFYRKASE------LYNECGRSQPASDA--------LAKAARALE-D-AVPEDAIQLYTDA- 74 (233)
Q Consensus 12 ~~~~g~~~~~~g~~~eA~~~~~~A~~------l~~~~g~~~~~a~~--------l~~lg~~~~-~-g~~~~A~~~~~~A- 74 (233)
-..+|..|-+.|++.+|+.+|.+|-. +.++++-....++. +...+..|+ . |..+.|...|.+|
T Consensus 970 cYhlaR~YEn~g~v~~Av~FfTrAqafsnAIRlcKEnd~~d~L~nlal~s~~~d~v~aArYyEe~g~~~~~AVmLYHkAG 1049 (1416)
T KOG3617|consen 970 CYHLARMYENDGDVVKAVKFFTRAQAFSNAIRLCKENDMKDRLANLALMSGGSDLVSAARYYEELGGYAHKAVMLYHKAG 1049 (1416)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhhcCchhHHHHHHHHHHcchhhhHHHHHHHhhc
Confidence 44677888899999999999888654 44455444433332 233355566 4 4777787777654
Q ss_pred -----HHHHHhcC------------ChHHHHHHHHHHHHHHHHhccHHHHHHHHH------HHHHHHhHcc---------
Q 026767 75 -----CIMLEEDD------------KEQMAFDLYRAATNVYIKLEKYADAATFLL------RWGLAADKCN--------- 122 (233)
Q Consensus 75 -----l~~~~~~g------------~~~~~~~~l~~lg~~~~~~g~~~~A~~~~~------~al~~~~~~~--------- 122 (233)
+++.-... +...-...+++.++++....+|++|..++- +|+.+|...+
T Consensus 1050 m~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~RcadFF~~~~qyekAV~lL~~ar~~~~AlqlC~~~nv~vtee~aE 1129 (1416)
T KOG3617|consen 1050 MIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCADFFENNQQYEKAVNLLCLAREFSGALQLCKNRNVRVTEEFAE 1129 (1416)
T ss_pred chHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHH
Confidence 33322111 222223578889999999999999987654 4444443221
Q ss_pred --------Ccc--hHHHhHHHHHHHHHhhCCHHHHHHHHHHh
Q 026767 123 --------ATN--SQCKAYLSAIIVYLYANDFKQAEKCYNDC 154 (233)
Q Consensus 123 --------~~~--~~a~~~~~lg~~~~~~gd~~~A~~~~~~a 154 (233)
... ..-..+-.++.+++++|+|..|-+-|.++
T Consensus 1130 ~mTp~Kd~~~~e~~R~~vLeqvae~c~qQG~Yh~AtKKfTQA 1171 (1416)
T KOG3617|consen 1130 LMTPTKDDMPNEQERKQVLEQVAELCLQQGAYHAATKKFTQA 1171 (1416)
T ss_pred hcCcCcCCCccHHHHHHHHHHHHHHHHhccchHHHHHHHhhh
Confidence 111 23345677788888888887777777665
No 181
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.45 E-value=0.00019 Score=46.43 Aligned_cols=51 Identities=20% Similarity=0.201 Sum_probs=43.5
Q ss_pred hCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Q 026767 61 DAVPEDAIQLYTDACIMLEEDDKEQMAFDLYRAATNVYIKLEKYADAATFLLRWGLA 117 (233)
Q Consensus 61 ~g~~~~A~~~~~~Al~~~~~~g~~~~~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~ 117 (233)
.|++++|++.|++++...+.. ..+...++.++.+.|++++|...+++++..
T Consensus 4 ~~~~~~A~~~~~~~l~~~p~~------~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 54 (68)
T PF14559_consen 4 QGDYDEAIELLEKALQRNPDN------PEARLLLAQCYLKQGQYDEAEELLERLLKQ 54 (68)
T ss_dssp TTHHHHHHHHHHHHHHHTTTS------HHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred ccCHHHHHHHHHHHHHHCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 689999999999999888763 257778999999999999999999988853
No 182
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.45 E-value=0.0042 Score=48.60 Aligned_cols=132 Identities=9% Similarity=-0.030 Sum_probs=91.5
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCChHHHHHHH
Q 026767 13 ESAAALAKELHNWREVADFYRKASELYNECGRSQPASDALAKAARALE-DAVPEDAIQLYTDACIMLEEDDKEQMAFDLY 91 (233)
Q Consensus 13 ~~~g~~~~~~g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~~~~~~~~l 91 (233)
..++...++.=|++..+.-..+.++...-. .....+|..+. .|++.+|..+|++|+.-.-. .....+
T Consensus 60 ~~~~~a~~q~ldP~R~~Rea~~~~~~ApTv-------qnr~rLa~al~elGr~~EA~~hy~qalsG~fA-----~d~a~l 127 (251)
T COG4700 60 HTLLMALQQKLDPERHLREATEELAIAPTV-------QNRYRLANALAELGRYHEAVPHYQQALSGIFA-----HDAAML 127 (251)
T ss_pred HHHHHHHHHhcChhHHHHHHHHHHhhchhH-------HHHHHHHHHHHHhhhhhhhHHHHHHHhccccC-----CCHHHH
Confidence 445566666667776666555555543222 22345666666 68999999999999854332 223577
Q ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHHhHccCcchHHHhHHHHHHHHHhhCCHHHHHHHHHHhhcC-CCC
Q 026767 92 RAATNVYIKLEKYADAATFLLRWGLAADKCNATNSQCKAYLSAIIVYLYANDFKQAEKCYNDCSQV-DAF 160 (233)
Q Consensus 92 ~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~gd~~~A~~~~~~al~~-~~~ 160 (233)
..++......+++..|...++...+.. .........+.++.++..+|.+.+|+..|+.++.. +++
T Consensus 128 LglA~Aqfa~~~~A~a~~tLe~l~e~~----pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg~ 193 (251)
T COG4700 128 LGLAQAQFAIQEFAAAQQTLEDLMEYN----PAFRSPDGHLLFARTLAAQGKYADAESAFEVAISYYPGP 193 (251)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHhhcC----CccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhCCCH
Confidence 788889999999999999999887653 22223345677889999999999999999999855 444
No 183
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.43 E-value=0.025 Score=44.37 Aligned_cols=116 Identities=12% Similarity=0.128 Sum_probs=64.0
Q ss_pred CCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHccCcchHHHhHHHHHHHHHhh
Q 026767 62 AVPEDAIQLYTDACIMLEEDDKEQMAFDLYRAATNVYIKLEKYADAATFLLRWGLAADKCNATNSQCKAYLSAIIVYLYA 141 (233)
Q Consensus 62 g~~~~A~~~~~~Al~~~~~~g~~~~~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~ 141 (233)
=|++.++.-..+.+++.+.. .-...+|..+.++|+|.+|..+|++++. |.--.....++.++...+..
T Consensus 70 ldP~R~~Rea~~~~~~ApTv-------qnr~rLa~al~elGr~~EA~~hy~qals-----G~fA~d~a~lLglA~Aqfa~ 137 (251)
T COG4700 70 LDPERHLREATEELAIAPTV-------QNRYRLANALAELGRYHEAVPHYQQALS-----GIFAHDAAMLLGLAQAQFAI 137 (251)
T ss_pred cChhHHHHHHHHHHhhchhH-------HHHHHHHHHHHHhhhhhhhHHHHHHHhc-----cccCCCHHHHHHHHHHHHhh
Confidence 44554444444444444432 2334566666777777777777777763 33334445566777777777
Q ss_pred CCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHH-hcCCHHHHHHHHhhc
Q 026767 142 NDFKQAEKCYNDCSQVDAFLRSDQNRCATKLISAY-TEGDVEEIKRVAQSS 191 (233)
Q Consensus 142 gd~~~A~~~~~~al~~~~~~~~~e~~~l~~L~~a~-~~gd~~~a~~~~~~~ 191 (233)
+++..|...+++....+.-.++.... ..+++++ ..|.++.|+..++.+
T Consensus 138 ~~~A~a~~tLe~l~e~~pa~r~pd~~--Ll~aR~laa~g~~a~Aesafe~a 186 (251)
T COG4700 138 QEFAAAQQTLEDLMEYNPAFRSPDGH--LLFARTLAAQGKYADAESAFEVA 186 (251)
T ss_pred ccHHHHHHHHHHHhhcCCccCCCCch--HHHHHHHHhcCCchhHHHHHHHH
Confidence 77777777777665433211222222 2345555 456666666666655
No 184
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=97.41 E-value=0.034 Score=42.47 Aligned_cols=167 Identities=17% Similarity=0.091 Sum_probs=117.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCChHHH
Q 026767 9 AKHMESAAALAKELHNWREVADFYRKASELYNECGRSQPASDALAKAARALE-DAVPEDAIQLYTDACIMLEEDDKEQMA 87 (233)
Q Consensus 9 a~~~~~~g~~~~~~g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~~~~~ 87 (233)
...+...+..+...+++..+...+..+... .........+...+..+. .+.+..++..+.+++........
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 130 (291)
T COG0457 59 AGLLLLLALALLKLGRLEEALELLEKALEL----ELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDL---- 130 (291)
T ss_pred hHHHHHHHHHHHHcccHHHHHHHHHHHHhh----hhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcch----
Confidence 355666777777888888888888888776 234456677778888888 68888888888888876665421
Q ss_pred HHHHHHHHH-HHHHhccHHHHHHHHHHHHHHHhHccCcchHHHhHHHHHHHHHhhCCHHHHHHHHHHhhcCCCCCCchHH
Q 026767 88 FDLYRAATN-VYIKLEKYADAATFLLRWGLAADKCNATNSQCKAYLSAIIVYLYANDFKQAEKCYNDCSQVDAFLRSDQN 166 (233)
Q Consensus 88 ~~~l~~lg~-~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~gd~~~A~~~~~~al~~~~~~~~~e~ 166 (233)
.....+. ++...|++++|...|++++... . ........+...+..+...+++..|...+.+++...... ..
T Consensus 131 --~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~ 202 (291)
T COG0457 131 --AEALLALGALYELGDYEEALELYEKALELD-P--ELNELAEALLALGALLEALGRYEEALELLEKALKLNPDD---DA 202 (291)
T ss_pred --HHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-C--CccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCccc---ch
Confidence 1222333 8889999999999999995421 1 013444556677777888899999999999988443221 34
Q ss_pred HHHHHHHHHH-hcCCHHHHHHHHhhc
Q 026767 167 RCATKLISAY-TEGDVEEIKRVAQSS 191 (233)
Q Consensus 167 ~~l~~L~~a~-~~gd~~~a~~~~~~~ 191 (233)
.....++..+ ..++.+.+...+...
T Consensus 203 ~~~~~~~~~~~~~~~~~~a~~~~~~~ 228 (291)
T COG0457 203 EALLNLGLLYLKLGKYEEALEYYEKA 228 (291)
T ss_pred HHHHHhhHHHHHcccHHHHHHHHHHH
Confidence 4566666666 567777777777776
No 185
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.41 E-value=0.014 Score=53.30 Aligned_cols=123 Identities=13% Similarity=-0.013 Sum_probs=85.3
Q ss_pred CCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHh--------ccHHHHHHHHHHHHHHHhHccCcchHHHhHHH
Q 026767 62 AVPEDAIQLYTDACIMLEEDDKEQMAFDLYRAATNVYIKL--------EKYADAATFLLRWGLAADKCNATNSQCKAYLS 133 (233)
Q Consensus 62 g~~~~A~~~~~~Al~~~~~~g~~~~~~~~l~~lg~~~~~~--------g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~ 133 (233)
+++.+|+.+|++|+++-+... .++-.++.++... .+..++.+..++++.+ ........++..
T Consensus 356 ~~~~~A~~lle~Ai~ldP~~a------~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al----~~~~~~~~~~~a 425 (517)
T PRK10153 356 KSLNKASDLLEEILKSEPDFT------YAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVAL----PELNVLPRIYEI 425 (517)
T ss_pred HHHHHHHHHHHHHHHhCCCcH------HHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhc----ccCcCChHHHHH
Confidence 558899999999999888653 2333334443322 2234444444444332 222333567888
Q ss_pred HHHHHHhhCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHH-hcCCHHHHHHHHhhc-ccccchHH
Q 026767 134 AIIVYLYANDFKQAEKCYNDCSQVDAFLRSDQNRCATKLISAY-TEGDVEEIKRVAQSS-AISNLDHV 199 (233)
Q Consensus 134 lg~~~~~~gd~~~A~~~~~~al~~~~~~~~~e~~~l~~L~~a~-~~gd~~~a~~~~~~~-~~~~ld~~ 199 (233)
+|.++...|++++|..++++++.+.. + ......+|.++ ..|+.++|.+.++++ -++..++.
T Consensus 426 la~~~~~~g~~~~A~~~l~rAl~L~p---s--~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt 488 (517)
T PRK10153 426 LAVQALVKGKTDEAYQAINKAIDLEM---S--WLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENT 488 (517)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCC---C--HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch
Confidence 99999999999999999999996652 2 45677788888 699999999999999 56665554
No 186
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=97.40 E-value=0.0061 Score=56.65 Aligned_cols=131 Identities=18% Similarity=0.270 Sum_probs=70.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHH------HHHHHHcCCchHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHH----
Q 026767 9 AKHMESAAALAKELHNWREVADFYRKA------SELYNECGRSQPASDALAKAARALE-DAVPEDAIQLYTDACIM---- 77 (233)
Q Consensus 9 a~~~~~~g~~~~~~g~~~eA~~~~~~A------~~l~~~~g~~~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~---- 77 (233)
.+.|..+|.+|-...++++|++||.+. +++. +..-|......-...|.-+. .|+++.|+.+|-+|-.+
T Consensus 661 ~elydkagdlfeki~d~dkale~fkkgdaf~kaiela-rfafp~evv~lee~wg~hl~~~~q~daainhfiea~~~~kai 739 (1636)
T KOG3616|consen 661 GELYDKAGDLFEKIHDFDKALECFKKGDAFGKAIELA-RFAFPEEVVKLEEAWGDHLEQIGQLDAAINHFIEANCLIKAI 739 (1636)
T ss_pred hHHHHhhhhHHHHhhCHHHHHHHHHcccHHHHHHHHH-HhhCcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhhhHHHHH
Confidence 355777888888888888888887543 3322 12223333333334455666 58888888877544322
Q ss_pred ---------------HHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHccCcchHHHhHHHHHHHHHhhC
Q 026767 78 ---------------LEEDDKEQMAFDLYRAATNVYIKLEKYADAATFLLRWGLAADKCNATNSQCKAYLSAIIVYLYAN 142 (233)
Q Consensus 78 ---------------~~~~g~~~~~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g 142 (233)
.....++..+...+-.++.-|...|+|+.|.++|.++-. .......|-+.|
T Consensus 740 eaai~akew~kai~ildniqdqk~~s~yy~~iadhyan~~dfe~ae~lf~e~~~--------------~~dai~my~k~~ 805 (1636)
T KOG3616|consen 740 EAAIGAKEWKKAISILDNIQDQKTASGYYGEIADHYANKGDFEIAEELFTEADL--------------FKDAIDMYGKAG 805 (1636)
T ss_pred HHHhhhhhhhhhHhHHHHhhhhccccccchHHHHHhccchhHHHHHHHHHhcch--------------hHHHHHHHhccc
Confidence 222233333333344455556666666666665554321 122334455556
Q ss_pred CHHHHHHHHHHh
Q 026767 143 DFKQAEKCYNDC 154 (233)
Q Consensus 143 d~~~A~~~~~~a 154 (233)
++..|.+.-+++
T Consensus 806 kw~da~kla~e~ 817 (1636)
T KOG3616|consen 806 KWEDAFKLAEEC 817 (1636)
T ss_pred cHHHHHHHHHHh
Confidence 665555555554
No 187
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=97.40 E-value=0.00051 Score=38.00 Aligned_cols=30 Identities=23% Similarity=0.382 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 026767 9 AKHMESAAALAKELHNWREVADFYRKASEL 38 (233)
Q Consensus 9 a~~~~~~g~~~~~~g~~~eA~~~~~~A~~l 38 (233)
|++|.++|.+|..+|++++|+.+|++|+++
T Consensus 1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~ 30 (34)
T PF00515_consen 1 AEAYYNLGNAYFQLGDYEEALEYYQRALEL 30 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhCCchHHHHHHHHHHHH
Confidence 345556666666666666666666666554
No 188
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.39 E-value=0.025 Score=44.50 Aligned_cols=104 Identities=16% Similarity=0.008 Sum_probs=79.5
Q ss_pred ChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHccCcchHHHhHHHHHHHHHhhCCHHHHHHHHHHhhcCCCCCC
Q 026767 83 KEQMAFDLYRAATNVYIKLEKYADAATFLLRWGLAADKCNATNSQCKAYLSAIIVYLYANDFKQAEKCYNDCSQVDAFLR 162 (233)
Q Consensus 83 ~~~~~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~gd~~~A~~~~~~al~~~~~~~ 162 (233)
....+......++..++..+++++|...++.++... .+....+-+-.+|+.+.+.+|.+++|+..+.... ..
T Consensus 84 ~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t---~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~-----~~ 155 (207)
T COG2976 84 KTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQT---KDENLKALAALRLARVQLQQKKADAALKTLDTIK-----EE 155 (207)
T ss_pred ccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccc---hhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccc-----cc
Confidence 444444566677888999999999999999998542 2333344455899999999999999999887643 12
Q ss_pred chHHHHHHHHHHHH-hcCCHHHHHHHHhhcccc
Q 026767 163 SDQNRCATKLISAY-TEGDVEEIKRVAQSSAIS 194 (233)
Q Consensus 163 ~~e~~~l~~L~~a~-~~gd~~~a~~~~~~~~~~ 194 (233)
+.......--|+++ ..||..+|+..++.++..
T Consensus 156 ~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~ 188 (207)
T COG2976 156 SWAAIVAELRGDILLAKGDKQEARAAYEKALES 188 (207)
T ss_pred cHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHc
Confidence 34566677788988 899999999999999444
No 189
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=97.37 E-value=0.014 Score=54.29 Aligned_cols=173 Identities=12% Similarity=0.067 Sum_probs=103.1
Q ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCC
Q 026767 5 PWDAAKHMESAAALAKELHNWREVADFYRKASELYNECGRSQPASDALAKAARALE-DAVPEDAIQLYTDACIMLEEDDK 83 (233)
Q Consensus 5 ~~~~a~~~~~~g~~~~~~g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~ 83 (233)
....+..|..+.......|++..+.++|++++-..- +.-..|+..+..|. -|....|+...++.+...++..+
T Consensus 319 ~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~------~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~ 392 (799)
T KOG4162|consen 319 FQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSF------GEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSD 392 (799)
T ss_pred hcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhh------hhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCc
Confidence 345677888888888899999999999999987642 44555666677766 56666777777776666654433
Q ss_pred hHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHccCcchHHHhHHHHHHHHHhh-----------CCHHHHHHHHH
Q 026767 84 EQMAFDLYRAATNVYIKLEKYADAATFLLRWGLAADKCNATNSQCKAYLSAIIVYLYA-----------NDFKQAEKCYN 152 (233)
Q Consensus 84 ~~~~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~-----------gd~~~A~~~~~ 152 (233)
.. .++.-.-.+.-+.+.+.++++|.++++..+.. ......++++..+|++|-.+ --..+++..++
T Consensus 393 ~s---~~Lmasklc~e~l~~~eegldYA~kai~~~~~-~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale 468 (799)
T KOG4162|consen 393 IS---VLLMASKLCIERLKLVEEGLDYAQKAISLLGG-QRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALE 468 (799)
T ss_pred ch---HHHHHHHHHHhchhhhhhHHHHHHHHHHHhhh-hhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHH
Confidence 32 13333334444567777777777777775522 22233445566666666443 12344555555
Q ss_pred HhhcCCCCCCchHHHHHHHHHHHH-hcCCHHHHHHHHhhc
Q 026767 153 DCSQVDAFLRSDQNRCATKLISAY-TEGDVEEIKRVAQSS 191 (233)
Q Consensus 153 ~al~~~~~~~~~e~~~l~~L~~a~-~~gd~~~a~~~~~~~ 191 (233)
+|++...-+. .++-.|+--| ..++...|...++++
T Consensus 469 ~av~~d~~dp----~~if~lalq~A~~R~l~sAl~~~~ea 504 (799)
T KOG4162|consen 469 EAVQFDPTDP----LVIFYLALQYAEQRQLTSALDYAREA 504 (799)
T ss_pred HHHhcCCCCc----hHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 5553321111 3333344334 456666666666666
No 190
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.37 E-value=0.0025 Score=50.36 Aligned_cols=102 Identities=19% Similarity=0.110 Sum_probs=84.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCChHHH
Q 026767 9 AKHMESAAALAKELHNWREVADFYRKASELYNECGRSQPASDALAKAARALE-DAVPEDAIQLYTDACIMLEEDDKEQMA 87 (233)
Q Consensus 9 a~~~~~~g~~~~~~g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~~~~~ 87 (233)
+..+..=|+-+...|+|.+|..-|.+|+++....-. ...+.+|.|-|.++. .+..+.||.-..+|+++.+.-.
T Consensus 95 ad~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~-e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~----- 168 (271)
T KOG4234|consen 95 ADSLKKEGNELFKNGDYEEANSKYQEALESCPSTST-EERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYE----- 168 (271)
T ss_pred HHHHHHHHHHhhhcccHHHHHHHHHHHHHhCccccH-HHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhH-----
Confidence 445556677777799999999999999999866554 456778888888888 8999999999999999977432
Q ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Q 026767 88 FDLYRAATNVYIKLEKYADAATFLLRWGLA 117 (233)
Q Consensus 88 ~~~l~~lg~~~~~~g~~~~A~~~~~~al~~ 117 (233)
.++.+-+.+|-++..|++|++-|.+.+++
T Consensus 169 -kAl~RRAeayek~ek~eealeDyKki~E~ 197 (271)
T KOG4234|consen 169 -KALERRAEAYEKMEKYEEALEDYKKILES 197 (271)
T ss_pred -HHHHHHHHHHHhhhhHHHHHHHHHHHHHh
Confidence 46778899999999999999999998875
No 191
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=97.36 E-value=0.0066 Score=54.73 Aligned_cols=119 Identities=18% Similarity=0.123 Sum_probs=92.1
Q ss_pred CHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhc
Q 026767 24 NWREVADFYRKASELYNECGRSQPASDALAKAARALE-DAVPEDAIQLYTDACIMLEEDDKEQMAFDLYRAATNVYIKLE 102 (233)
Q Consensus 24 ~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~~~~~~~~l~~lg~~~~~~g 102 (233)
+.++|.+..++....| | ..+..+...|.++. .|+.++|++.|++|+..-.+ .+.....|+..++.++.-+.
T Consensus 248 ~~~~a~~lL~~~~~~y-----P-~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~--~~Ql~~l~~~El~w~~~~~~ 319 (468)
T PF10300_consen 248 PLEEAEELLEEMLKRY-----P-NSALFLFFEGRLERLKGNLEEAIESFERAIESQSE--WKQLHHLCYFELAWCHMFQH 319 (468)
T ss_pred CHHHHHHHHHHHHHhC-----C-CcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhh--HHhHHHHHHHHHHHHHHHHc
Confidence 3455666666655554 3 45566777889988 89999999999999843322 22234468999999999999
Q ss_pred cHHHHHHHHHHHHHHHhHccCcchHHHhHHHHHHHHHhhCCH-------HHHHHHHHHhh
Q 026767 103 KYADAATFLLRWGLAADKCNATNSQCKAYLSAIIVYLYANDF-------KQAEKCYNDCS 155 (233)
Q Consensus 103 ~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~gd~-------~~A~~~~~~al 155 (233)
+|.+|..++.+..+. ..++.+...+-.|.|+...|+. ++|.+.|.++-
T Consensus 320 ~w~~A~~~f~~L~~~-----s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp 374 (468)
T PF10300_consen 320 DWEEAAEYFLRLLKE-----SKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVP 374 (468)
T ss_pred hHHHHHHHHHHHHhc-----cccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHH
Confidence 999999999988753 4677777779999999999999 88888888775
No 192
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=97.36 E-value=0.0039 Score=46.63 Aligned_cols=89 Identities=15% Similarity=0.054 Sum_probs=66.0
Q ss_pred HHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHccCcchH
Q 026767 49 SDALAKAARALE-DAVPEDAIQLYTDACIMLEEDDKEQMAFDLYRAATNVYIKLEKYADAATFLLRWGLAADKCNATNSQ 127 (233)
Q Consensus 49 a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~~~~~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 127 (233)
+..+.+-|.-.. .|+|.+|++.++.-..-|+-..-. -.+...++.+|.+.++|++|+..+++-+.+.-. ....
T Consensus 10 ~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya---~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~---hp~v 83 (142)
T PF13512_consen 10 PQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYA---EQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPT---HPNV 83 (142)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCccc---HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC---CCCc
Confidence 444555555555 799999998888877777655432 356788999999999999999999998877532 3445
Q ss_pred HHhHHHHHHHHHhhCC
Q 026767 128 CKAYLSAIIVYLYAND 143 (233)
Q Consensus 128 a~~~~~lg~~~~~~gd 143 (233)
..++...|+++..+.+
T Consensus 84 dYa~Y~~gL~~~~~~~ 99 (142)
T PF13512_consen 84 DYAYYMRGLSYYEQDE 99 (142)
T ss_pred cHHHHHHHHHHHHHhh
Confidence 5678888888887765
No 193
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=97.33 E-value=0.00066 Score=37.54 Aligned_cols=29 Identities=24% Similarity=0.353 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHH
Q 026767 89 DLYRAATNVYIKLEKYADAATFLLRWGLA 117 (233)
Q Consensus 89 ~~l~~lg~~~~~~g~~~~A~~~~~~al~~ 117 (233)
.++.++|.++..+|++++|+.+|++++++
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~ 30 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHH
Confidence 45666777777777777777777777655
No 194
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.32 E-value=0.0038 Score=51.40 Aligned_cols=101 Identities=17% Similarity=0.069 Sum_probs=82.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCChHHHHH
Q 026767 11 HMESAAALAKELHNWREVADFYRKASELYNECGRSQPASDALAKAARALE-DAVPEDAIQLYTDACIMLEEDDKEQMAFD 89 (233)
Q Consensus 11 ~~~~~g~~~~~~g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~~~~~~~ 89 (233)
.|+.+-..|+ .|+|.+|.+.|..=++-|- +..-.++++.=+|.++. +|+++.|...|...+.-++...+ +-+
T Consensus 144 ~Y~~A~~~~k-sgdy~~A~~~F~~fi~~YP---~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~K---Apd 216 (262)
T COG1729 144 LYNAALDLYK-SGDYAEAEQAFQAFIKKYP---NSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPK---APD 216 (262)
T ss_pred HHHHHHHHHH-cCCHHHHHHHHHHHHHcCC---CCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCC---ChH
Confidence 4555555555 8899999999998887773 23346778888999999 89999999999999987776554 446
Q ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHH
Q 026767 90 LYRAATNVYIKLEKYADAATFLLRWGLAA 118 (233)
Q Consensus 90 ~l~~lg~~~~~~g~~~~A~~~~~~al~~~ 118 (233)
.+..+|.+..++|+.++|...|++.+.-|
T Consensus 217 allKlg~~~~~l~~~d~A~atl~qv~k~Y 245 (262)
T COG1729 217 ALLKLGVSLGRLGNTDEACATLQQVIKRY 245 (262)
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHC
Confidence 89999999999999999999999998654
No 195
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=97.31 E-value=0.036 Score=47.40 Aligned_cols=142 Identities=11% Similarity=-0.014 Sum_probs=94.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH--------------HHHcCCchHHHHH--------------HHHHHHHhh-h
Q 026767 11 HMESAAALAKELHNWREVADFYRKASEL--------------YNECGRSQPASDA--------------LAKAARALE-D 61 (233)
Q Consensus 11 ~~~~~g~~~~~~g~~~eA~~~~~~A~~l--------------~~~~g~~~~~a~~--------------l~~lg~~~~-~ 61 (233)
-...+|.-+...|++..|+..|..|++. |...|....+..- -..-|.++. +
T Consensus 40 khlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~vllK~ 119 (504)
T KOG0624|consen 40 KHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVVLLKQ 119 (504)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchhhhhc
Confidence 3456777777789999999999888863 3334443222211 122256666 7
Q ss_pred CCHHHHHHHHHHHHHHHHhcCChHH---------HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHccCcchHHHhHH
Q 026767 62 AVPEDAIQLYTDACIMLEEDDKEQM---------AFDLYRAATNVYIKLEKYADAATFLLRWGLAADKCNATNSQCKAYL 132 (233)
Q Consensus 62 g~~~~A~~~~~~Al~~~~~~g~~~~---------~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~ 132 (233)
|.+++|..-|.+-+..-...+.... .-..+.....-+...|++..|+++..+.+++ .+..+..+.
T Consensus 120 Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi------~~Wda~l~~ 193 (504)
T KOG0624|consen 120 GELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEI------QPWDASLRQ 193 (504)
T ss_pred ccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhc------CcchhHHHH
Confidence 8899998888888776654442111 1122333344455678999999998888876 234455677
Q ss_pred HHHHHHHhhCCHHHHHHHHHHhhcCC
Q 026767 133 SAIIVYLYANDFKQAEKCYNDCSQVD 158 (233)
Q Consensus 133 ~lg~~~~~~gd~~~A~~~~~~al~~~ 158 (233)
.-+.||.+.|+...|+.-+..+-.+.
T Consensus 194 ~Rakc~i~~~e~k~AI~Dlk~askLs 219 (504)
T KOG0624|consen 194 ARAKCYIAEGEPKKAIHDLKQASKLS 219 (504)
T ss_pred HHHHHHHhcCcHHHHHHHHHHHHhcc
Confidence 78899999999999999888875443
No 196
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=97.30 E-value=0.00077 Score=38.88 Aligned_cols=34 Identities=15% Similarity=0.216 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc
Q 026767 9 AKHMESAAALAKELHNWREVADFYRKASELYNEC 42 (233)
Q Consensus 9 a~~~~~~g~~~~~~g~~~eA~~~~~~A~~l~~~~ 42 (233)
+.++.++|.+|...|++++|..++++++.++++.
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 35 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALEIRERL 35 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHHHHHHH
Confidence 5677777777777777888888777777777654
No 197
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=97.29 E-value=0.00068 Score=39.11 Aligned_cols=34 Identities=15% Similarity=0.125 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHc
Q 026767 88 FDLYRAATNVYIKLEKYADAATFLLRWGLAADKC 121 (233)
Q Consensus 88 ~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~ 121 (233)
+.+++++|.+|..+|++++|..++++++.+.++.
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 35 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALEIRERL 35 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHHHHHHH
Confidence 3578899999999999999999999998887664
No 198
>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]
Probab=97.27 E-value=0.056 Score=46.07 Aligned_cols=189 Identities=11% Similarity=0.088 Sum_probs=140.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh--hCCHHHHHHHHHHHHHHHHhcCChHHH
Q 026767 10 KHMESAAALAKELHNWREVADFYRKASELYNECGRSQPASDALAKAARALE--DAVPEDAIQLYTDACIMLEEDDKEQMA 87 (233)
Q Consensus 10 ~~~~~~g~~~~~~g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~--~g~~~~A~~~~~~Al~~~~~~g~~~~~ 87 (233)
.+..++|.+|...|+..+-....+..-..+...+.. .++.....+-..+. .+..+.-+......+++.....+....
T Consensus 49 ~~Ilel~~ll~~~~~~~~lr~li~~~Rpf~~~v~Ka-kaaKlvR~Lvd~~~~~~~~~~~~i~l~~~cIeWA~~ekRtFLR 127 (411)
T KOG1463|consen 49 QSILELGDLLAKEGDAEELRDLITSLRPFLSSVSKA-KAAKLVRSLVDMFLKIDDGTGDQIELCTECIEWAKREKRTFLR 127 (411)
T ss_pred HHHHHHHHHHHhccchhHHHHHHHHHHHHHHHhhhH-HHHHHHHHHHHHHccCCCCcchHHHHHHHHHHHHHHHhHHHHH
Confidence 356678888988999988888888888888777766 46666666666655 467778999999999999998866555
Q ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHccCcchHHHhHHHHHHHHHhhCCHHHHHHHHHHhh--cCCCCCCchH
Q 026767 88 FDLYRAATNVYIKLEKYADAATFLLRWGLAADKCNATNSQCKAYLSAIIVYLYANDFKQAEKCYNDCS--QVDAFLRSDQ 165 (233)
Q Consensus 88 ~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~gd~~~A~~~~~~al--~~~~~~~~~e 165 (233)
-..-.++..+|...++|.+|+......+.-..+..+......++.--..+|....+..+|...+.-|- ...-++++.-
T Consensus 128 q~Learli~Ly~d~~~YteAlaL~~~L~rElKKlDDK~lLvev~llESK~y~~l~Nl~KakasLTsART~AnaiYcpPql 207 (411)
T KOG1463|consen 128 QSLEARLIRLYNDTKRYTEALALINDLLRELKKLDDKILLVEVHLLESKAYHALRNLPKAKASLTSARTTANAIYCPPQL 207 (411)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhcccccceeeehhhhhHHHHHHhcchhHHHHHHHHHHhhcccccCHHH
Confidence 55667899999999999999999999888888888877766677777788888889999999888776 2233554433
Q ss_pred HHHHHHH-HHHH-hcCCHHHHHHHHhhc--ccccchHH
Q 026767 166 NRCATKL-ISAY-TEGDVEEIKRVAQSS--AISNLDHV 199 (233)
Q Consensus 166 ~~~l~~L-~~a~-~~gd~~~a~~~~~~~--~~~~ld~~ 199 (233)
...+.-. |-.| +..|+..|-.++-++ -|..++..
T Consensus 208 Qa~lDLqSGIlha~ekDykTafSYFyEAfEgf~s~~~~ 245 (411)
T KOG1463|consen 208 QATLDLQSGILHAAEKDYKTAFSYFYEAFEGFDSLDDD 245 (411)
T ss_pred HHHHHHhccceeecccccchHHHHHHHHHccccccCCc
Confidence 3322222 1123 458888877777766 67777663
No 199
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=97.24 E-value=0.016 Score=53.02 Aligned_cols=157 Identities=11% Similarity=0.045 Sum_probs=111.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCChHHHHHH
Q 026767 12 MESAAALAKELHNWREVADFYRKASELYNECGRSQPASDALAKAARALE-DAVPEDAIQLYTDACIMLEEDDKEQMAFDL 90 (233)
Q Consensus 12 ~~~~g~~~~~~g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~~~~~~~~ 90 (233)
|..+-.+|- .++|...+...+.-+.-+-+. ..++.-.|..+. .|+-++|..+.+.++.. +...- -|
T Consensus 11 F~~~lk~yE-~kQYkkgLK~~~~iL~k~~eH------geslAmkGL~L~~lg~~~ea~~~vr~glr~-----d~~S~-vC 77 (700)
T KOG1156|consen 11 FRRALKCYE-TKQYKKGLKLIKQILKKFPEH------GESLAMKGLTLNCLGKKEEAYELVRLGLRN-----DLKSH-VC 77 (700)
T ss_pred HHHHHHHHH-HHHHHhHHHHHHHHHHhCCcc------chhHHhccchhhcccchHHHHHHHHHHhcc-----Ccccc-hh
Confidence 344444443 667777777777766643333 344555688888 79999999999999873 32222 49
Q ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHHhHccCcchHHHhHHHHHHHHHhhCCHHHHHHHHHHhhcCCCCCCchHHHHHH
Q 026767 91 YRAATNVYIKLEKYADAATFLLRWGLAADKCNATNSQCKAYLSAIIVYLYANDFKQAEKCYNDCSQVDAFLRSDQNRCAT 170 (233)
Q Consensus 91 l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~gd~~~A~~~~~~al~~~~~~~~~e~~~l~ 170 (233)
++.+|.++....+|++|+.+|+.|+.+ .+..-..+..++....+++++........+.+++.. .......
T Consensus 78 wHv~gl~~R~dK~Y~eaiKcy~nAl~~------~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~----~~ra~w~ 147 (700)
T KOG1156|consen 78 WHVLGLLQRSDKKYDEAIKCYRNALKI------EKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRP----SQRASWI 147 (700)
T ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHhc------CCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhh----hhHHHHH
Confidence 999999999999999999999999975 334456788999999999999988888777764431 1122222
Q ss_pred HHHHH-HhcCCHHHHHHHHhhc
Q 026767 171 KLISA-YTEGDVEEIKRVAQSS 191 (233)
Q Consensus 171 ~L~~a-~~~gd~~~a~~~~~~~ 191 (233)
.++-+ +..|+...|...++++
T Consensus 148 ~~Avs~~L~g~y~~A~~il~ef 169 (700)
T KOG1156|consen 148 GFAVAQHLLGEYKMALEILEEF 169 (700)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 23332 3678888888888877
No 200
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.24 E-value=0.014 Score=48.74 Aligned_cols=93 Identities=13% Similarity=0.084 Sum_probs=45.4
Q ss_pred HHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhc---cHHHHHHHHHHHHHHHhHccCcch
Q 026767 51 ALAKAARALE-DAVPEDAIQLYTDACIMLEEDDKEQMAFDLYRAATNVYIKLE---KYADAATFLLRWGLAADKCNATNS 126 (233)
Q Consensus 51 ~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~~~~~~~~l~~lg~~~~~~g---~~~~A~~~~~~al~~~~~~~~~~~ 126 (233)
-|.-+|.+|. .|++..|...|.+|+.+..+.. ..+..+|.++..+. .-.++...+.+++.+ .+.
T Consensus 158 gW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~------~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~------D~~ 225 (287)
T COG4235 158 GWDLLGRAYMALGRASDALLAYRNALRLAGDNP------EILLGLAEALYYQAGQQMTAKARALLRQALAL------DPA 225 (287)
T ss_pred hHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHhcCCcccHHHHHHHHHHHhc------CCc
Confidence 3444555555 4555555555555555544321 23334444443321 333455555555532 333
Q ss_pred HHHhHHHHHHHHHhhCCHHHHHHHHHHhh
Q 026767 127 QCKAYLSAIIVYLYANDFKQAEKCYNDCS 155 (233)
Q Consensus 127 ~a~~~~~lg~~~~~~gd~~~A~~~~~~al 155 (233)
..++++-++..++..|||.+|...|+..+
T Consensus 226 ~iral~lLA~~afe~g~~~~A~~~Wq~lL 254 (287)
T COG4235 226 NIRALSLLAFAAFEQGDYAEAAAAWQMLL 254 (287)
T ss_pred cHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 34445555555555555555555555554
No 201
>PRK11906 transcriptional regulator; Provisional
Probab=97.21 E-value=0.024 Score=50.30 Aligned_cols=146 Identities=7% Similarity=0.049 Sum_probs=98.8
Q ss_pred HHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh-h---------CCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 026767 25 WREVADFYRKASELYNECGRSQPASDALAKAARALE-D---------AVPEDAIQLYTDACIMLEEDDKEQMAFDLYRAA 94 (233)
Q Consensus 25 ~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~-~---------g~~~~A~~~~~~Al~~~~~~g~~~~~~~~l~~l 94 (233)
.+.|+.+|.+|+... ..|| .-+.++.-++.++. . .+..+|.++.++|+++-+.. +.++..+
T Consensus 274 ~~~Al~lf~ra~~~~--~ldp-~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~D------a~a~~~~ 344 (458)
T PRK11906 274 IYRAMTIFDRLQNKS--DIQT-LKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVD------GKILAIM 344 (458)
T ss_pred HHHHHHHHHHHhhcc--cCCc-ccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCC------HHHHHHH
Confidence 346777777776221 1122 22344444444433 1 23456777777887776543 3688899
Q ss_pred HHHHHHhccHHHHHHHHHHHHHHHhHccCcchHHHhHHHHHHHHHhhCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHH
Q 026767 95 TNVYIKLEKYADAATFLLRWGLAADKCNATNSQCKAYLSAIIVYLYANDFKQAEKCYNDCSQVDAFLRSDQNRCATKLIS 174 (233)
Q Consensus 95 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~gd~~~A~~~~~~al~~~~~~~~~e~~~l~~L~~ 174 (233)
|.++.-.++++.|+..|++|+.+ .++.+.++...|.++...|+.++|.+.+++++.+.-+ ...+.++....+
T Consensus 345 g~~~~~~~~~~~a~~~f~rA~~L------~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~--~~~~~~~~~~~~ 416 (458)
T PRK11906 345 GLITGLSGQAKVSHILFEQAKIH------STDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPR--RRKAVVIKECVD 416 (458)
T ss_pred HHHHHhhcchhhHHHHHHHHhhc------CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCch--hhHHHHHHHHHH
Confidence 99999999999999999999976 4566788999999999999999999999999865422 123445666666
Q ss_pred HHhcCCHHHHHHH
Q 026767 175 AYTEGDVEEIKRV 187 (233)
Q Consensus 175 a~~~gd~~~a~~~ 187 (233)
.|-..-.+.+...
T Consensus 417 ~~~~~~~~~~~~~ 429 (458)
T PRK11906 417 MYVPNPLKNNIKL 429 (458)
T ss_pred HHcCCchhhhHHH
Confidence 7733334444433
No 202
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.21 E-value=0.033 Score=49.57 Aligned_cols=178 Identities=10% Similarity=0.017 Sum_probs=124.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCc----hHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCChH
Q 026767 11 HMESAAALAKELHNWREVADFYRKASELYNECGRS----QPASDALAKAARALE-DAVPEDAIQLYTDACIMLEEDDKEQ 85 (233)
Q Consensus 11 ~~~~~g~~~~~~g~~~eA~~~~~~A~~l~~~~g~~----~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~~~ 85 (233)
.++++..+-.-.|++.+|++-.....+.+.+.-.+ ...+....-+|.... -+.++.|..+|..|...-...+-
T Consensus 325 ~LE~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl-- 402 (629)
T KOG2300|consen 325 LLEHIVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDL-- 402 (629)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHH--
Confidence 45666666566899999999999999988776552 345666666777666 58899999999999888776543
Q ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH-hHccCcchHHHhHHHHHHHHHhhCCHHHHHHHHHHhhcCCCCC--C
Q 026767 86 MAFDLYRAATNVYIKLEKYADAATFLLRWGLAA-DKCNATNSQCKAYLSAIIVYLYANDFKQAEKCYNDCSQVDAFL--R 162 (233)
Q Consensus 86 ~~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~a~~~~~lg~~~~~~gd~~~A~~~~~~al~~~~~~--~ 162 (233)
-+.+-.|++.+|++.|+-+.--+.++..-... .......-.+.+++.-|.....++++.+|...+.+.+.+..-. .
T Consensus 403 -~a~~nlnlAi~YL~~~~~ed~y~~ld~i~p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkmanaed~~ 481 (629)
T KOG2300|consen 403 -QAFCNLNLAISYLRIGDAEDLYKALDLIGPLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMANAEDLN 481 (629)
T ss_pred -HHHHHHhHHHHHHHhccHHHHHHHHHhcCCCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcchhhHH
Confidence 34578899999999886554433333221110 0011123456677888899999999999999999998665422 2
Q ss_pred chHHHHHHHHHHHH-hcCCHHHHHHHHhhc
Q 026767 163 SDQNRCATKLISAY-TEGDVEEIKRVAQSS 191 (233)
Q Consensus 163 ~~e~~~l~~L~~a~-~~gd~~~a~~~~~~~ 191 (233)
.-.+-.|.-|+..+ ..||..+++..++-+
T Consensus 482 rL~a~~LvLLs~v~lslgn~~es~nmvrpa 511 (629)
T KOG2300|consen 482 RLTACSLVLLSHVFLSLGNTVESRNMVRPA 511 (629)
T ss_pred HHHHHHHHHHHHHHHHhcchHHHHhccchH
Confidence 33344566677666 689999988887776
No 203
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=97.19 E-value=0.0012 Score=36.29 Aligned_cols=31 Identities=26% Similarity=0.302 Sum_probs=18.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 026767 9 AKHMESAAALAKELHNWREVADFYRKASELY 39 (233)
Q Consensus 9 a~~~~~~g~~~~~~g~~~eA~~~~~~A~~l~ 39 (233)
|+++..+|.+|...|++++|+.+|++|+.+.
T Consensus 1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~l~ 31 (34)
T PF07719_consen 1 AEAWYYLGQAYYQLGNYEEAIEYFEKALELD 31 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHC
Confidence 3455666666666666666666666666553
No 204
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=97.17 E-value=0.012 Score=49.91 Aligned_cols=113 Identities=15% Similarity=0.132 Sum_probs=73.7
Q ss_pred HHHHHHHcCCchHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHH
Q 026767 35 ASELYNECGRSQPASDALAKAARALE-DAVPEDAIQLYTDACIMLEEDDKEQMAFDLYRAATNVYIKLEKYADAATFLLR 113 (233)
Q Consensus 35 A~~l~~~~g~~~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~~~~~~~~l~~lg~~~~~~g~~~~A~~~~~~ 113 (233)
++..--.-|+++..|..+..=|.-|. ..+|..|+..|.+++.- ..+++...+.+|.|-+-+...+|+|..|+.-+.+
T Consensus 67 slK~da~E~ep~E~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~--kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~ 144 (390)
T KOG0551|consen 67 SLKADAEEGEPHEQAENYKEEGNEYFKEKRYKDAVESYTEGLKK--KCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSA 144 (390)
T ss_pred HhhhccccCChHHHHHHHHHHhHHHHHhhhHHHHHHHHHHHHhh--cCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 33333355677777777777777666 57777777777776643 4445555556777777777777777777777777
Q ss_pred HHHHHhHccCcchHHHhHHHHHHHHHhhCCHHHHHHHHHHhh
Q 026767 114 WGLAADKCNATNSQCKAYLSAIIVYLYANDFKQAEKCYNDCS 155 (233)
Q Consensus 114 al~~~~~~~~~~~~a~~~~~lg~~~~~~gd~~~A~~~~~~al 155 (233)
++.+ .+...+++..-+.|++.+.++..|..-.++.+
T Consensus 145 al~~------~P~h~Ka~~R~Akc~~eLe~~~~a~nw~ee~~ 180 (390)
T KOG0551|consen 145 ALKL------KPTHLKAYIRGAKCLLELERFAEAVNWCEEGL 180 (390)
T ss_pred HHhc------CcchhhhhhhhhHHHHHHHHHHHHHHHHhhhh
Confidence 7643 34445666666777777777666666666654
No 205
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=97.12 E-value=0.015 Score=50.29 Aligned_cols=117 Identities=15% Similarity=0.044 Sum_probs=68.4
Q ss_pred HHHHcCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Q 026767 18 LAKELHNWREVADFYRKASELYNECGRSQPASDALAKAARALEDAVPEDAIQLYTDACIMLEEDDKEQMAFDLYRAATNV 97 (233)
Q Consensus 18 ~~~~~g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~~g~~~~A~~~~~~Al~~~~~~g~~~~~~~~l~~lg~~ 97 (233)
-+-+.|++++|.....+++.- ..|+. +...-....-+++..=++..++.+....+.. ..+..+|.+
T Consensus 272 ~li~l~~~~~A~~~i~~~Lk~---~~D~~-----L~~~~~~l~~~d~~~l~k~~e~~l~~h~~~p------~L~~tLG~L 337 (400)
T COG3071 272 RLIRLGDHDEAQEIIEDALKR---QWDPR-----LCRLIPRLRPGDPEPLIKAAEKWLKQHPEDP------LLLSTLGRL 337 (400)
T ss_pred HHHHcCChHHHHHHHHHHHHh---ccChh-----HHHHHhhcCCCCchHHHHHHHHHHHhCCCCh------hHHHHHHHH
Confidence 344566666666666665543 33333 1111111222555555555555555444332 356677777
Q ss_pred HHHhccHHHHHHHHHHHHHHHhHccCcchHHHhHHHHHHHHHhhCCHHHHHHHHHHhh
Q 026767 98 YIKLEKYADAATFLLRWGLAADKCNATNSQCKAYLSAIIVYLYANDFKQAEKCYNDCS 155 (233)
Q Consensus 98 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~gd~~~A~~~~~~al 155 (233)
+.+.+.|.+|.++|+.|+.. ...+..+.-++.++.++|+..+|...+++++
T Consensus 338 ~~k~~~w~kA~~~leaAl~~-------~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L 388 (400)
T COG3071 338 ALKNKLWGKASEALEAALKL-------RPSASDYAELADALDQLGEPEEAEQVRREAL 388 (400)
T ss_pred HHHhhHHHHHHHHHHHHHhc-------CCChhhHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 77777777777777766643 2234456677777777777777777777776
No 206
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.10 E-value=0.094 Score=47.69 Aligned_cols=133 Identities=11% Similarity=0.135 Sum_probs=81.8
Q ss_pred hCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH----------------------
Q 026767 61 DAVPEDAIQLYTDACIMLEEDDKEQMAFDLYRAATNVYIKLEKYADAATFLLRWGLAA---------------------- 118 (233)
Q Consensus 61 ~g~~~~A~~~~~~Al~~~~~~g~~~~~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~---------------------- 118 (233)
.+..++|+..+. ...... -.++.--+.++.++|+|++|++.|+..+.-.
T Consensus 92 lnk~Dealk~~~----~~~~~~-----~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~ 162 (652)
T KOG2376|consen 92 LNKLDEALKTLK----GLDRLD-----DKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQ 162 (652)
T ss_pred cccHHHHHHHHh----cccccc-----hHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHH
Confidence 466666666665 111111 1366677899999999999999999864311
Q ss_pred --hHccCcc-hHHHhHHHHHHHHHhhCCHHHHHHHHHHhhcCCC--C---CCc-hHHH-----HHHHHHHHH-hcCCHHH
Q 026767 119 --DKCNATN-SQCKAYLSAIIVYLYANDFKQAEKCYNDCSQVDA--F---LRS-DQNR-----CATKLISAY-TEGDVEE 183 (233)
Q Consensus 119 --~~~~~~~-~~a~~~~~lg~~~~~~gd~~~A~~~~~~al~~~~--~---~~~-~e~~-----~l~~L~~a~-~~gd~~~ 183 (233)
....... +--..++|.+.++...|+|.+|++.++.++.+.+ + ... ++.. +-..|.-++ ..|+.++
T Consensus 163 ~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~e 242 (652)
T KOG2376|consen 163 LLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAE 242 (652)
T ss_pred HHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHH
Confidence 1111111 1223458999999999999999999999953321 1 111 2222 334455555 5899999
Q ss_pred HHHHHhhc-ccccchHHHHH
Q 026767 184 IKRVAQSS-AISNLDHVIIK 202 (233)
Q Consensus 184 a~~~~~~~-~~~~ld~~~~~ 202 (233)
+......- --...|.+...
T Consensus 243 a~~iy~~~i~~~~~D~~~~A 262 (652)
T KOG2376|consen 243 ASSIYVDIIKRNPADEPSLA 262 (652)
T ss_pred HHHHHHHHHHhcCCCchHHH
Confidence 98876666 33334444333
No 207
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=97.10 E-value=0.0016 Score=35.76 Aligned_cols=29 Identities=14% Similarity=0.228 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHH
Q 026767 89 DLYRAATNVYIKLEKYADAATFLLRWGLA 117 (233)
Q Consensus 89 ~~l~~lg~~~~~~g~~~~A~~~~~~al~~ 117 (233)
.++..+|.++..+|+|++|+.+|++++.+
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l 30 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 45667777777777777777777777765
No 208
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=97.07 E-value=0.02 Score=54.83 Aligned_cols=134 Identities=16% Similarity=0.145 Sum_probs=73.2
Q ss_pred HHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHccCcchH
Q 026767 49 SDALAKAARALE-DAVPEDAIQLYTDACIMLEEDDKEQMAFDLYRAATNVYIKLEKYADAATFLLRWGLAADKCNATNSQ 127 (233)
Q Consensus 49 a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~~~~~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 127 (233)
|-++.-+|.+|. -.|.-.|-++|.+|-++-... +.+-..++++|.+..+++.|...+.++.+... ....
T Consensus 492 apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatd------aeaaaa~adtyae~~~we~a~~I~l~~~qka~----a~~~ 561 (1238)
T KOG1127|consen 492 APAFAFLGQIYRDSDDMKRAKKCFDKAFELDATD------AEAAAASADTYAEESTWEEAFEICLRAAQKAP----AFAC 561 (1238)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchh------hhhHHHHHHHhhccccHHHHHHHHHHHhhhch----HHHH
Confidence 334444455554 234445555555554443211 12223344444555555554444322221110 0011
Q ss_pred HHhHHHHHHHHHhhCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHH-hcCCHHHHHHHHhhc-ccccc
Q 026767 128 CKAYLSAIIVYLYANDFKQAEKCYNDCSQVDAFLRSDQNRCATKLISAY-TEGDVEEIKRVAQSS-AISNL 196 (233)
Q Consensus 128 a~~~~~lg~~~~~~gd~~~A~~~~~~al~~~~~~~~~e~~~l~~L~~a~-~~gd~~~a~~~~~~~-~~~~l 196 (233)
-..+...|..|+..+++..|+..|+.++.+. +.......+||++| +.|....|.....++ ++++.
T Consensus 562 k~nW~~rG~yyLea~n~h~aV~~fQsALR~d----PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~ 628 (1238)
T KOG1127|consen 562 KENWVQRGPYYLEAHNLHGAVCEFQSALRTD----PKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPL 628 (1238)
T ss_pred HhhhhhccccccCccchhhHHHHHHHHhcCC----chhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcH
Confidence 1123347788888888888888888887332 23356777889999 889999988888888 44443
No 209
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=97.06 E-value=0.041 Score=49.67 Aligned_cols=170 Identities=12% Similarity=0.012 Sum_probs=113.2
Q ss_pred HcCCHHHHHHHHHHHHHHHHHcCCchHHHHHH----HHHHHHhh------hCCHHHHHHHHHHHHHHHHhcCChHHHHHH
Q 026767 21 ELHNWREVADFYRKASELYNECGRSQPASDAL----AKAARALE------DAVPEDAIQLYTDACIMLEEDDKEQMAFDL 90 (233)
Q Consensus 21 ~~g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l----~~lg~~~~------~g~~~~A~~~~~~Al~~~~~~g~~~~~~~~ 90 (233)
-.||-+.++.+..+|.+ .++..+.--.+ ........ ..+.+.|.+........|++. +--
T Consensus 200 F~gdR~~GL~~L~~~~~----~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~yP~s------~lf 269 (468)
T PF10300_consen 200 FSGDRELGLRLLWEASK----SENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRYPNS------ALF 269 (468)
T ss_pred cCCcHHHHHHHHHHHhc----cCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhCCCc------HHH
Confidence 36889999999998865 23332222111 11122111 135567777777777777752 246
Q ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHHhHccCcchHHHhHHHHHHHHHhhCCHHHHHHHHHHhhcCCCCCCchHHHHHH
Q 026767 91 YRAATNVYIKLEKYADAATFLLRWGLAADKCNATNSQCKAYLSAIIVYLYANDFKQAEKCYNDCSQVDAFLRSDQNRCAT 170 (233)
Q Consensus 91 l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~gd~~~A~~~~~~al~~~~~~~~~e~~~l~ 170 (233)
+...|.++...|+.++|++.|++++.. +...+....-+++.++.++..+.++.+|.++|.+..... .|..+-..-
T Consensus 270 l~~~gR~~~~~g~~~~Ai~~~~~a~~~--q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s---~WSka~Y~Y 344 (468)
T PF10300_consen 270 LFFEGRLERLKGNLEEAIESFERAIES--QSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES---KWSKAFYAY 344 (468)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHhccc--hhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc---ccHHHHHHH
Confidence 778899999999999999999999853 233445556778999999999999999999999987543 233333333
Q ss_pred HHHHHH-hcCCHHHHHHHHhhc--ccccchHHHHHHhc
Q 026767 171 KLISAY-TEGDVEEIKRVAQSS--AISNLDHVIIKLAR 205 (233)
Q Consensus 171 ~L~~a~-~~gd~~~a~~~~~~~--~~~~ld~~~~~l~~ 205 (233)
..+-.+ ..|+.+.+.+..+++ .|...+.-..++..
T Consensus 345 ~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l~~k~~g 382 (468)
T PF10300_consen 345 LAAACLLMLGREEEAKEHKKEAEELFRKVPKLKQKKAG 382 (468)
T ss_pred HHHHHHHhhccchhhhhhHHHHHHHHHHHHHHHhhhcc
Confidence 334444 677776666666666 66666665555444
No 210
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=97.04 E-value=0.0091 Score=50.57 Aligned_cols=108 Identities=12% Similarity=0.162 Sum_probs=94.7
Q ss_pred CChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhc
Q 026767 3 SSPWDAAKHMESAAALAKELHNWREVADFYRKASELYNECGRSQPASDALAKAARALE-DAVPEDAIQLYTDACIMLEED 81 (233)
Q Consensus 3 ~~~~~~a~~~~~~g~~~~~~g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~ 81 (233)
+++...|..|..=|+-|....+|..|+.+|.+++. .+.+|+.--+.+|.|-+-+.. .|+|..|+.-..+|+.+-+.
T Consensus 75 ~ep~E~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk--~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~- 151 (390)
T KOG0551|consen 75 GEPHEQAENYKEEGNEYFKEKRYKDAVESYTEGLK--KKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPT- 151 (390)
T ss_pred CChHHHHHHHHHHhHHHHHhhhHHHHHHHHHHHHh--hcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcc-
Confidence 57888999999999999999999999999999976 578999999999999988877 89999999999999877653
Q ss_pred CChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Q 026767 82 DKEQMAFDLYRAATNVYIKLEKYADAATFLLRWGLAA 118 (233)
Q Consensus 82 g~~~~~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~ 118 (233)
-..++.+-+.+++++.+++.|...++..+.+.
T Consensus 152 -----h~Ka~~R~Akc~~eLe~~~~a~nw~ee~~~~d 183 (390)
T KOG0551|consen 152 -----HLKAYIRGAKCLLELERFAEAVNWCEEGLQID 183 (390)
T ss_pred -----hhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhh
Confidence 23678888999999999999999999887553
No 211
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=97.03 E-value=0.15 Score=42.66 Aligned_cols=133 Identities=16% Similarity=0.201 Sum_probs=93.5
Q ss_pred HHcCCHHHHHHHHHHHHHHHHHcCCc---hHHHHHHHHHHHHhh-hC-CHHHHHHHHHHHHHHHHh-c--C-----ChHH
Q 026767 20 KELHNWREVADFYRKASELYNECGRS---QPASDALAKAARALE-DA-VPEDAIQLYTDACIMLEE-D--D-----KEQM 86 (233)
Q Consensus 20 ~~~g~~~eA~~~~~~A~~l~~~~g~~---~~~a~~l~~lg~~~~-~g-~~~~A~~~~~~Al~~~~~-~--g-----~~~~ 86 (233)
...||++.|..++.|+-.+.. ..++ ...+..+.++|.-.. .+ +++.|+.|+++|.++... . + -...
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~-~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~el 82 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLN-SLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSEL 82 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHh-cCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHH
Confidence 458999999999999999875 4444 456778999999888 78 999999999999999755 1 1 1134
Q ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhH-ccCcchHHHhHHHHHHHHHhhCCHHHHHHHHHHhhcC
Q 026767 87 AFDLYRAATNVYIKLEKYADAATFLLRWGLAADK-CNATNSQCKAYLSAIIVYLYANDFKQAEKCYNDCSQV 157 (233)
Q Consensus 87 ~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~a~~~~~lg~~~~~~gd~~~A~~~~~~al~~ 157 (233)
...++..++.+|...+.++.... ..+++..... .++++. .+.--..+....++.+.+.+.+.+.+..
T Consensus 83 r~~iL~~La~~~l~~~~~~~~~k-a~~~l~~l~~e~~~~~~---~~~L~l~il~~~~~~~~~~~~L~~mi~~ 150 (278)
T PF08631_consen 83 RLSILRLLANAYLEWDTYESVEK-ALNALRLLESEYGNKPE---VFLLKLEILLKSFDEEEYEEILMRMIRS 150 (278)
T ss_pred HHHHHHHHHHHHHcCCChHHHHH-HHHHHHHHHHhCCCCcH---HHHHHHHHHhccCChhHHHHHHHHHHHh
Confidence 45789999999999988864444 3344444433 233222 2222222333378999999999988733
No 212
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=97.03 E-value=0.076 Score=49.54 Aligned_cols=145 Identities=13% Similarity=0.086 Sum_probs=100.6
Q ss_pred CchHHHHHHHHHHHHhh-h-CCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHc
Q 026767 44 RSQPASDALAKAARALE-D-AVPEDAIQLYTDACIMLEEDDKEQMAFDLYRAATNVYIKLEKYADAATFLLRWGLAADKC 121 (233)
Q Consensus 44 ~~~~~a~~l~~lg~~~~-~-g~~~~A~~~~~~Al~~~~~~g~~~~~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~ 121 (233)
.+...+.+..++|.++. . .+++.|..+++|++.+.++.+-......+-.-++.++.+.+... |...+.+.++.++..
T Consensus 54 ~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~ 132 (608)
T PF10345_consen 54 SPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETY 132 (608)
T ss_pred CHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhcc
Confidence 36788999999999998 4 89999999999999999885533333455666799999888887 999999999988764
Q ss_pred cCcchHHHhHHHHHHH--HHhhCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHH---hcCCHHHHHHHHhhc
Q 026767 122 NATNSQCKAYLSAIIV--YLYANDFKQAEKCYNDCSQVDAFLRSDQNRCATKLISAY---TEGDVEEIKRVAQSS 191 (233)
Q Consensus 122 ~~~~~~a~~~~~lg~~--~~~~gd~~~A~~~~~~al~~~~~~~~~e~~~l~~L~~a~---~~gd~~~a~~~~~~~ 191 (233)
+..... ..+.+..+ ++..+|+..|.+.++.....+...+.....++-.+.++. ..+.++.+.+.+++.
T Consensus 133 ~~~~w~--~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~ 205 (608)
T PF10345_consen 133 GHSAWY--YAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDDVLELLQRA 205 (608)
T ss_pred CchhHH--HHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchhHHHHHHHH
Confidence 333221 12333322 222389999999999987666544445555555555533 355555555555544
No 213
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.01 E-value=0.13 Score=42.20 Aligned_cols=157 Identities=14% Similarity=0.089 Sum_probs=92.7
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCChHHHHHHH
Q 026767 13 ESAAALAKELHNWREVADFYRKASELYNECGRSQPASDALAKAARALE-DAVPEDAIQLYTDACIMLEEDDKEQMAFDLY 91 (233)
Q Consensus 13 ~~~g~~~~~~g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~~~~~~~~l 91 (233)
++...+....|+.+-|..|+.+-..-| - +.-++..--|..++ .|++++|+++|+.-++=- +...+ ++
T Consensus 56 EqV~IAAld~~~~~lAq~C~~~L~~~f--p----~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~dd-----pt~~v-~~ 123 (289)
T KOG3060|consen 56 EQVFIAALDTGRDDLAQKCINQLRDRF--P----GSKRVGKLKAMLLEATGNYKEAIEYYESLLEDD-----PTDTV-IR 123 (289)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHHhC--C----CChhHHHHHHHHHHHhhchhhHHHHHHHHhccC-----cchhH-HH
Confidence 333334444444445544444443333 1 11222333366666 677777777777655322 22222 33
Q ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHHhHccCcchHHHhHHHHHHHHHhhCCHHHHHHHHHHhhcCCCCCCchHHHHHHH
Q 026767 92 RAATNVYIKLEKYADAATFLLRWGLAADKCNATNSQCKAYLSAIIVYLYANDFKQAEKCYNDCSQVDAFLRSDQNRCATK 171 (233)
Q Consensus 92 ~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~gd~~~A~~~~~~al~~~~~~~~~e~~~l~~ 171 (233)
.+---+.-.+|+--+|++.+..-++.|-.+ ..++..++.+|+..|+|.+|.-|+++.+-+.-| .......
T Consensus 124 KRKlAilka~GK~l~aIk~ln~YL~~F~~D------~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~----n~l~f~r 193 (289)
T KOG3060|consen 124 KRKLAILKAQGKNLEAIKELNEYLDKFMND------QEAWHELAEIYLSEGDFEKAAFCLEELLLIQPF----NPLYFQR 193 (289)
T ss_pred HHHHHHHHHcCCcHHHHHHHHHHHHHhcCc------HHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCC----cHHHHHH
Confidence 333334445677777877777777665432 346778899999999999999999998855544 3456677
Q ss_pred HHHHH-h---cCCHHHHHHHHhhc
Q 026767 172 LISAY-T---EGDVEEIKRVAQSS 191 (233)
Q Consensus 172 L~~a~-~---~gd~~~a~~~~~~~ 191 (233)
+++.+ - ..+.+.+++++.++
T Consensus 194 lae~~Yt~gg~eN~~~arkyy~~a 217 (289)
T KOG3060|consen 194 LAEVLYTQGGAENLELARKYYERA 217 (289)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHH
Confidence 77754 3 34566677777777
No 214
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=96.97 E-value=0.0025 Score=35.03 Aligned_cols=30 Identities=20% Similarity=0.397 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 026767 10 KHMESAAALAKELHNWREVADFYRKASELY 39 (233)
Q Consensus 10 ~~~~~~g~~~~~~g~~~eA~~~~~~A~~l~ 39 (233)
+++..+|.+|..+|++++|+.+|++++++.
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~ 31 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELN 31 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 445555555555555555555555555543
No 215
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=96.89 E-value=0.027 Score=47.28 Aligned_cols=131 Identities=11% Similarity=0.096 Sum_probs=93.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHH-hh-hCCHHHHHHHHHHHHHHHHhcCChHHHH
Q 026767 11 HMESAAALAKELHNWREVADFYRKASELYNECGRSQPASDALAKAARA-LE-DAVPEDAIQLYTDACIMLEEDDKEQMAF 88 (233)
Q Consensus 11 ~~~~~g~~~~~~g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~-~~-~g~~~~A~~~~~~Al~~~~~~g~~~~~~ 88 (233)
+|....+..++.+..+.|...|.+|. +. ....-.+|...|.+ |. .++.+.|...|+++++.|....
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~----~~--~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~------ 70 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRAR----KD--KRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDP------ 70 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH----CC--CCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-H------
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHH----cC--CCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCH------
Confidence 56677788888888999999999995 22 22344678888888 44 4788889999999999998754
Q ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHccCcchHHHhHHHHHHHHHhhCCHHHHHHHHHHhhc
Q 026767 89 DLYRAATNVYIKLEKYADAATFLLRWGLAADKCNATNSQCKAYLSAIIVYLYANDFKQAEKCYNDCSQ 156 (233)
Q Consensus 89 ~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~gd~~~A~~~~~~al~ 156 (233)
..+..+...++..++.+.|..+|++++.. .......-..+.....--..-|+.+...+...++..
T Consensus 71 ~~~~~Y~~~l~~~~d~~~aR~lfer~i~~---l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~ 135 (280)
T PF05843_consen 71 DFWLEYLDFLIKLNDINNARALFERAISS---LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE 135 (280)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHCCT---SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHh---cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 35566778889999999999999999864 222221233556666666777999888888877763
No 216
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=96.85 E-value=0.0034 Score=34.53 Aligned_cols=30 Identities=17% Similarity=0.284 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Q 026767 89 DLYRAATNVYIKLEKYADAATFLLRWGLAA 118 (233)
Q Consensus 89 ~~l~~lg~~~~~~g~~~~A~~~~~~al~~~ 118 (233)
.++..+|.++..+|++++|+.+|++++++.
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~ 31 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELN 31 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 456677777777777777777777777653
No 217
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=96.85 E-value=0.11 Score=47.79 Aligned_cols=187 Identities=12% Similarity=-0.018 Sum_probs=121.5
Q ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHH---------HHHhhh-------CCHHHHH
Q 026767 5 PWDAAKHMESAAALAKELHNWREVADFYRKASELYNECGRSQPASDALAKA---------ARALED-------AVPEDAI 68 (233)
Q Consensus 5 ~~~~a~~~~~~g~~~~~~g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~l---------g~~~~~-------g~~~~A~ 68 (233)
+...+..+.++|.-|-+.|++++|.+.|++|+.--....|+...-+++... +..-.. .+.+-.+
T Consensus 244 tDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~ 323 (835)
T KOG2047|consen 244 TDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQTVMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHM 323 (835)
T ss_pred cHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhheehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHH
Confidence 356778899999999999999999999999999776666666555444332 210001 1334455
Q ss_pred HHHHHHHHHHHhcCChHHHH----HHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHccCcchHHHhHHHHHHHHHhhCCH
Q 026767 69 QLYTDACIMLEEDDKEQMAF----DLYRAATNVYIKLEKYADAATFLLRWGLAADKCNATNSQCKAYLSAIIVYLYANDF 144 (233)
Q Consensus 69 ~~~~~Al~~~~~~g~~~~~~----~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~gd~ 144 (233)
..|+..++...-.=+..... .+-.-+-.+-+..|++.+-+..|.+|+.-.......-.....+..++..|-..|+.
T Consensus 324 a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~l~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l 403 (835)
T KOG2047|consen 324 ARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVKLYEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDL 403 (835)
T ss_pred HHHHHHHhccchHHHHHHHhcCCccHHHHHhhhhhhcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcH
Confidence 55555554333211100000 12222334556678999999999999865433333334455678999999999999
Q ss_pred HHHHHHHHHhhcCCCCCCchHHHHHHHHHHHH-hcCCHHHHHHHHhhc
Q 026767 145 KQAEKCYNDCSQVDAFLRSDQNRCATKLISAY-TEGDVEEIKRVAQSS 191 (233)
Q Consensus 145 ~~A~~~~~~al~~~~~~~~~e~~~l~~L~~a~-~~gd~~~a~~~~~~~ 191 (233)
+.|+..|+++...+-.....-+.+...-++.- ...+++.|.+..+++
T Consensus 404 ~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A 451 (835)
T KOG2047|consen 404 DDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRA 451 (835)
T ss_pred HHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhh
Confidence 99999999998665433333344555555543 567888888888887
No 218
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.84 E-value=0.33 Score=43.47 Aligned_cols=168 Identities=11% Similarity=0.033 Sum_probs=120.1
Q ss_pred HcCCHHHHHHHHHHHHHHHHHcCCchHHHHHH--------HHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCC----hHHH
Q 026767 21 ELHNWREVADFYRKASELYNECGRSQPASDAL--------AKAARALE-DAVPEDAIQLYTDACIMLEEDDK----EQMA 87 (233)
Q Consensus 21 ~~g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l--------~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~----~~~~ 87 (233)
..|-+++|..+-++++....+....++...++ .++..+-. .|++.+|++-.....+++..... +...
T Consensus 287 ~~gy~~~~~K~tDe~i~q~eklkq~d~~srilsm~km~~LE~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~ 366 (629)
T KOG2300|consen 287 PAGYFKKAQKYTDEAIKQTEKLKQADLMSRILSMFKMILLEHIVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHE 366 (629)
T ss_pred hhHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhH
Confidence 46778999999999999988877776555544 34444444 59999999999999999998775 3445
Q ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHccCcchHHHhHHHHHHHHHhhCCHHHHHHHHHHhhcCCCCCC---ch
Q 026767 88 FDLYRAATNVYIKLEKYADAATFLLRWGLAADKCNATNSQCKAYLSAIIVYLYANDFKQAEKCYNDCSQVDAFLR---SD 164 (233)
Q Consensus 88 ~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~gd~~~A~~~~~~al~~~~~~~---~~ 164 (233)
+.+..-+|......+.|+.|...|..+..+..+. ...+.+-.+++.+|+..|+-+.-.+.++..--...+.- ..
T Consensus 367 ~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~---dl~a~~nlnlAi~YL~~~~~ed~y~~ld~i~p~nt~s~ssq~l 443 (629)
T KOG2300|consen 367 AQIHMLLGLYSHSVNCYENAEFHFIEATKLTESI---DLQAFCNLNLAISYLRIGDAEDLYKALDLIGPLNTNSLSSQRL 443 (629)
T ss_pred HHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHH---HHHHHHHHhHHHHHHHhccHHHHHHHHHhcCCCCCCcchHHHH
Confidence 5677778888888999999999999998765543 33667779999999998876555555544322222221 23
Q ss_pred HHHHHHHHH-HHHhcCCHHHHHHHHhhc
Q 026767 165 QNRCATKLI-SAYTEGDVEEIKRVAQSS 191 (233)
Q Consensus 165 e~~~l~~L~-~a~~~gd~~~a~~~~~~~ 191 (233)
++.++-.-| -++..+|..+|...+.+-
T Consensus 444 ~a~~~~v~glfaf~qn~lnEaK~~l~e~ 471 (629)
T KOG2300|consen 444 EASILYVYGLFAFKQNDLNEAKRFLRET 471 (629)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 333333333 356789999999888776
No 219
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=96.84 E-value=0.11 Score=45.38 Aligned_cols=175 Identities=13% Similarity=0.014 Sum_probs=110.9
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCChHH
Q 026767 8 AAKHMESAAALAKELHNWREVADFYRKASELYNECGRSQPASDALAKAARALE-DAVPEDAIQLYTDACIMLEEDDKEQM 86 (233)
Q Consensus 8 ~a~~~~~~g~~~~~~g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~~~~ 86 (233)
+|+.|.-+..+|...++...-...+..-+....-..|..+++...+-+=..|. .+.|++|-..-.++. |++......
T Consensus 168 ~ak~~fy~~l~~E~~~~l~~~rs~l~~~lrtAtLrhd~e~qavLiN~LLr~yL~n~lydqa~~lvsK~~--~pe~~snne 245 (493)
T KOG2581|consen 168 AAKLYFYLYLSYELEGRLADIRSFLHALLRTATLRHDEEGQAVLINLLLRNYLHNKLYDQADKLVSKSV--YPEAASNNE 245 (493)
T ss_pred HHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhhcCcchhHHHHHHHHHHHHhhhHHHHHHHHHhhccc--CccccccHH
Confidence 56666667777777777666655555555555545588888888888888888 788888888777664 333333334
Q ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHccCcchHHHhHHHHHHHHHhhCCHHHHHHHHHHhhcCCCCCCchHH
Q 026767 87 AFDLYRAATNVYIKLEKYADAATFLLRWGLAADKCNATNSQCKAYLSAIIVYLYANDFKQAEKCYNDCSQVDAFLRSDQN 166 (233)
Q Consensus 87 ~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~gd~~~A~~~~~~al~~~~~~~~~e~ 166 (233)
.+..+.-+|.+..-+++|..|.+++.+|+.........-..-.+..-+..+.+-+|++++=.-..+-.+ ..--
T Consensus 246 ~ARY~yY~GrIkaiqldYssA~~~~~qa~rkapq~~alGf~q~v~k~~ivv~ll~geiPers~F~Qp~~-------~ksL 318 (493)
T KOG2581|consen 246 WARYLYYLGRIKAIQLDYSSALEYFLQALRKAPQHAALGFRQQVNKLMIVVELLLGEIPERSVFRQPGM-------RKSL 318 (493)
T ss_pred HHHHHHHHhhHHHhhcchhHHHHHHHHHHHhCcchhhhhHHHHHHHHHHHHHHHcCCCcchhhhcCccH-------HHHH
Confidence 567888999999999999999999999987543211111112233344455556676553211111100 0011
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhhc
Q 026767 167 RCATKLISAYTEGDVEEIKRVAQSS 191 (233)
Q Consensus 167 ~~l~~L~~a~~~gd~~~a~~~~~~~ 191 (233)
...-.|..+.+.||...|.+.++++
T Consensus 319 ~~Yf~Lt~AVr~gdlkkF~~~leq~ 343 (493)
T KOG2581|consen 319 RPYFKLTQAVRLGDLKKFNETLEQF 343 (493)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 2334566677778888888887777
No 220
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=96.77 E-value=0.035 Score=46.89 Aligned_cols=125 Identities=12% Similarity=0.100 Sum_probs=82.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh---hC--CHHHHHHHHHHHHHHHHhcCChH
Q 026767 11 HMESAAALAKELHNWREVADFYRKASELYNECGRSQPASDALAKAARALE---DA--VPEDAIQLYTDACIMLEEDDKEQ 85 (233)
Q Consensus 11 ~~~~~g~~~~~~g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~---~g--~~~~A~~~~~~Al~~~~~~g~~~ 85 (233)
+..-.-.+|..++|++.|...++.. .+.++- .++.+++..+. .| .+.+|.-.|++-.+.+. .
T Consensus 133 ~~al~Vqi~L~~~R~dlA~k~l~~~----~~~~eD----~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~---~-- 199 (290)
T PF04733_consen 133 LLALAVQILLKMNRPDLAEKELKNM----QQIDED----SILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFG---S-- 199 (290)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHH----HCCSCC----HHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS-------
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHH----HhcCCc----HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccC---C--
Confidence 3334456777899999988777664 333333 23444544433 23 58888888888544332 1
Q ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHccCcchHHHhHHHHHHHHHhhCCH-HHHHHHHHHhh
Q 026767 86 MAFDLYRAATNVYIKLEKYADAATFLLRWGLAADKCNATNSQCKAYLSAIIVYLYANDF-KQAEKCYNDCS 155 (233)
Q Consensus 86 ~~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~gd~-~~A~~~~~~al 155 (233)
-..+++.++.+++.+|+|++|.+.+++++.. .+....++.|++.+...+|+. +.+.+++.+..
T Consensus 200 -t~~~lng~A~~~l~~~~~~eAe~~L~~al~~------~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~ 263 (290)
T PF04733_consen 200 -TPKLLNGLAVCHLQLGHYEEAEELLEEALEK------DPNDPDTLANLIVCSLHLGKPTEAAERYLSQLK 263 (290)
T ss_dssp -SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-------CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCH
T ss_pred -CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh------ccCCHHHHHHHHHHHHHhCCChhHHHHHHHHHH
Confidence 2357899999999999999999999998742 233456888999999999998 55666777654
No 221
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=96.77 E-value=0.018 Score=48.04 Aligned_cols=100 Identities=18% Similarity=0.072 Sum_probs=80.4
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh-h---CCHHHHHHHHHHHHHHHHhcC
Q 026767 7 DAAKHMESAAALAKELHNWREVADFYRKASELYNECGRSQPASDALAKAARALE-D---AVPEDAIQLYTDACIMLEEDD 82 (233)
Q Consensus 7 ~~a~~~~~~g~~~~~~g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~-~---g~~~~A~~~~~~Al~~~~~~g 82 (233)
+-++.|.-+|.+|...|+++.|...|.+|.++. |+. ...+..+|.++. . ....++...+.+++..-..
T Consensus 154 ~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~---g~n---~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~-- 225 (287)
T COG4235 154 GDAEGWDLLGRAYMALGRASDALLAYRNALRLA---GDN---PEILLGLAEALYYQAGQQMTAKARALLRQALALDPA-- 225 (287)
T ss_pred CCchhHHHHHHHHHHhcchhHHHHHHHHHHHhC---CCC---HHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCc--
Confidence 345678899999999999999999999999885 433 344566677766 3 3567899999999876543
Q ss_pred ChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Q 026767 83 KEQMAFDLYRAATNVYIKLEKYADAATFLLRWGLAA 118 (233)
Q Consensus 83 ~~~~~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~ 118 (233)
...++.-+|..+.+.|+|.+|+..++..+...
T Consensus 226 ----~iral~lLA~~afe~g~~~~A~~~Wq~lL~~l 257 (287)
T COG4235 226 ----NIRALSLLAFAAFEQGDYAEAAAAWQMLLDLL 257 (287)
T ss_pred ----cHHHHHHHHHHHHHcccHHHHHHHHHHHHhcC
Confidence 23578889999999999999999999998764
No 222
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=96.76 E-value=0.16 Score=50.59 Aligned_cols=156 Identities=9% Similarity=0.031 Sum_probs=115.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCChHHHHH
Q 026767 11 HMESAAALAKELHNWREVADFYRKASELYNECGRSQPASDALAKAARALE-DAVPEDAIQLYTDACIMLEEDDKEQMAFD 89 (233)
Q Consensus 11 ~~~~~g~~~~~~g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~~~~~~~ 89 (233)
+|.|+-++| |.-+.-..-|++|.+.. .+-.++..+..+|. -+.+++|.++|+.-++-|++. -.
T Consensus 1502 A~lNlEn~y---G~eesl~kVFeRAcqyc-------d~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~------~~ 1565 (1710)
T KOG1070|consen 1502 AYLNLENAY---GTEESLKKVFERACQYC-------DAYTVHLKLLGIYEKSEKNDEADELLRLMLKKFGQT------RK 1565 (1710)
T ss_pred HHHhHHHhh---CcHHHHHHHHHHHHHhc-------chHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcch------hh
Confidence 444554444 55556667778877664 45678899999999 699999999999999888842 25
Q ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHhHccCcchHHHhHHHHHHHHHhhCCHHHHHHHHHHhh-cCCCCCCchHHHH
Q 026767 90 LYRAATNVYIKLEKYADAATFLLRWGLAADKCNATNSQCKAYLSAIIVYLYANDFKQAEKCYNDCS-QVDAFLRSDQNRC 168 (233)
Q Consensus 90 ~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~gd~~~A~~~~~~al-~~~~~~~~~e~~~ 168 (233)
++..++..+++..+-..|...+.+|+....+ +.........+...++.||.++++..|+..+ ..|... .+
T Consensus 1566 vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk----~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRt-----Dl 1636 (1710)
T KOG1070|consen 1566 VWIMYADFLLRQNEAEAARELLKRALKSLPK----QEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPKRT-----DL 1636 (1710)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHhhcch----hhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCccch-----hH
Confidence 7888999999999999999999999976543 2223345677888899999999999999887 444332 22
Q ss_pred HHHHHHHH-hcCCHHHHHHHHhhc
Q 026767 169 ATKLISAY-TEGDVEEIKRVAQSS 191 (233)
Q Consensus 169 l~~L~~a~-~~gd~~~a~~~~~~~ 191 (233)
..-.++.- ..||..-++..+++.
T Consensus 1637 W~VYid~eik~~~~~~vR~lfeRv 1660 (1710)
T KOG1070|consen 1637 WSVYIDMEIKHGDIKYVRDLFERV 1660 (1710)
T ss_pred HHHHHHHHHccCCHHHHHHHHHHH
Confidence 33334433 578888888888877
No 223
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=96.75 E-value=0.14 Score=42.70 Aligned_cols=182 Identities=13% Similarity=0.177 Sum_probs=102.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCChHHHH
Q 026767 10 KHMESAAALAKELHNWREVADFYRKASELYNECGRSQPASDALAKAARALE-DAVPEDAIQLYTDACIMLEEDDKEQMAF 88 (233)
Q Consensus 10 ~~~~~~g~~~~~~g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~~~~~~ 88 (233)
+++.++-.++..++++++-.+.|.+-+...+..=...-.-.+.+++-.... ..+.+--.++|+..++..++..+.+.-.
T Consensus 66 KALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWF 145 (440)
T KOG1464|consen 66 KALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWF 145 (440)
T ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeee
Confidence 567777778888999999999999988876653322222233333333222 2344444455555555555444333222
Q ss_pred HHHHHHHHHHHHhccHHHHH----------------------------------------------HHHHHHHHHHhHcc
Q 026767 89 DLYRAATNVYIKLEKYADAA----------------------------------------------TFLLRWGLAADKCN 122 (233)
Q Consensus 89 ~~l~~lg~~~~~~g~~~~A~----------------------------------------------~~~~~al~~~~~~~ 122 (233)
.+-..+|.+|...|+|.+-. .+|++++.+-..+.
T Consensus 146 KTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIP 225 (440)
T KOG1464|consen 146 KTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIP 225 (440)
T ss_pred eccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCC
Confidence 33444555555444444433 33444444333333
Q ss_pred CcchHHHhHHHHHHHHHhhCCHHHHHHHHHHhhc---------------------------CCCC--------CCchHHH
Q 026767 123 ATNSQCKAYLSAIIVYLYANDFKQAEKCYNDCSQ---------------------------VDAF--------LRSDQNR 167 (233)
Q Consensus 123 ~~~~~a~~~~~lg~~~~~~gd~~~A~~~~~~al~---------------------------~~~~--------~~~~e~~ 167 (233)
.+...+...-.=|..|++.|++.+|-.-|=+|.. +..| ....|--
T Consensus 226 HPlImGvIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsGspRRttCLKYLVLANMLmkS~iNPFDsQEAKPyKNdPEIl 305 (440)
T KOG1464|consen 226 HPLIMGVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPRRTTCLKYLVLANMLMKSGINPFDSQEAKPYKNDPEIL 305 (440)
T ss_pred chHHHhHHHHcCCccccccchHHHHHhHHHHHHhcccccCCcchhHHHHHHHHHHHHHHcCCCCCcccccCCCCCCHHHH
Confidence 3333332223335567777888877654433320 1111 1346677
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhc
Q 026767 168 CATKLISAYTEGDVEEIKRVAQSS 191 (233)
Q Consensus 168 ~l~~L~~a~~~gd~~~a~~~~~~~ 191 (233)
++.+|..+|..+|..+|+..++..
T Consensus 306 AMTnlv~aYQ~NdI~eFE~Il~~~ 329 (440)
T KOG1464|consen 306 AMTNLVAAYQNNDIIEFERILKSN 329 (440)
T ss_pred HHHHHHHHHhcccHHHHHHHHHhh
Confidence 899999999999999999988866
No 224
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=96.75 E-value=0.036 Score=51.05 Aligned_cols=143 Identities=11% Similarity=0.059 Sum_probs=95.2
Q ss_pred HHHHHHHHHcCCchHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHH
Q 026767 33 RKASELYNECGRSQPASDALAKAARALE-DAVPEDAIQLYTDACIMLEEDDKEQMAFDLYRAATNVYIKLEKYADAATFL 111 (233)
Q Consensus 33 ~~A~~l~~~~g~~~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~~~~~~~~l~~lg~~~~~~g~~~~A~~~~ 111 (233)
++|-.++.+.-...+..+++.+-+.+.. ++..++|+++++++++.|+... ..+.-+|.++.++++.+.|.+.|
T Consensus 635 eraR~llakar~~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~fp~f~------Kl~lmlGQi~e~~~~ie~aR~aY 708 (913)
T KOG0495|consen 635 ERARDLLAKARSISGTERVWMKSANLERYLDNVEEALRLLEEALKSFPDFH------KLWLMLGQIEEQMENIEMAREAY 708 (913)
T ss_pred HHHHHHHHHHhccCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCchH------HHHHHHhHHHHHHHHHHHHHHHH
Confidence 3333344444445566777877777777 7899999999999999888654 45667888888899999998888
Q ss_pred HHHHHHHhHccCcchHHHhHHHHHHHHHhhCCHHHHHHHHHHhh-cCCCCCCchHHHHHHHHHHHHhcCCHHHHHHHHhh
Q 026767 112 LRWGLAADKCNATNSQCKAYLSAIIVYLYANDFKQAEKCYNDCS-QVDAFLRSDQNRCATKLISAYTEGDVEEIKRVAQS 190 (233)
Q Consensus 112 ~~al~~~~~~~~~~~~a~~~~~lg~~~~~~gd~~~A~~~~~~al-~~~~~~~~~e~~~l~~L~~a~~~gd~~~a~~~~~~ 190 (233)
...+..|-. -.-.+..++.+--..|...+|+..++++. ..+.. ..-.|..+---++.|..+.|.....+
T Consensus 709 ~~G~k~cP~------~ipLWllLakleEk~~~~~rAR~ildrarlkNPk~----~~lwle~Ir~ElR~gn~~~a~~lmak 778 (913)
T KOG0495|consen 709 LQGTKKCPN------SIPLWLLLAKLEEKDGQLVRARSILDRARLKNPKN----ALLWLESIRMELRAGNKEQAELLMAK 778 (913)
T ss_pred HhccccCCC------CchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCCc----chhHHHHHHHHHHcCCHHHHHHHHHH
Confidence 877755421 12245677777777788888888888875 33321 11122222222367777777766666
Q ss_pred c
Q 026767 191 S 191 (233)
Q Consensus 191 ~ 191 (233)
+
T Consensus 779 A 779 (913)
T KOG0495|consen 779 A 779 (913)
T ss_pred H
Confidence 5
No 225
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=96.70 E-value=0.4 Score=45.76 Aligned_cols=181 Identities=12% Similarity=0.014 Sum_probs=114.1
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhc--C
Q 026767 6 WDAAKHMESAAALAKELHNWREVADFYRKASELYNECGRSQPASDALAKAARALE-DAVPEDAIQLYTDACIMLEED--D 82 (233)
Q Consensus 6 ~~~a~~~~~~g~~~~~~g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~--g 82 (233)
..-+.++..+|.+..-.|++++|..+..++.++.++.+.+.-+.++....+.++. +|+...|. -+++-...+.. +
T Consensus 494 ~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~--~~~~~~~~~~q~l~ 571 (894)
T COG2909 494 RSRIVALSVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAE--QEKAFNLIREQHLE 571 (894)
T ss_pred hhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHH--HHHHHHHHHHHHhh
Confidence 3445667778888888999999999999999999999999999999999999999 89433332 23333222222 1
Q ss_pred -ChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHccCcchHH-HhHHHHHHHHHhhCCHHHHHHHHHHhhcCC--
Q 026767 83 -KEQMAFDLYRAATNVYIKLEKYADAATFLLRWGLAADKCNATNSQC-KAYLSAIIVYLYANDFKQAEKCYNDCSQVD-- 158 (233)
Q Consensus 83 -~~~~~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a-~~~~~lg~~~~~~gd~~~A~~~~~~al~~~-- 158 (233)
.+.... .+...+.++...-+++.+..-....+++........... -.+..++.+++..||+++|.....+.....
T Consensus 572 q~~~~~f-~~~~r~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~ 650 (894)
T COG2909 572 QKPRHEF-LVRIRAQLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLN 650 (894)
T ss_pred hcccchh-HHHHHHHHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcC
Confidence 122111 222223333323337888777777776654433332222 223589999999999999999998876221
Q ss_pred C-CCCchHHHHHHHHHHHH--hcCCHHHHHHHHhh
Q 026767 159 A-FLRSDQNRCATKLISAY--TEGDVEEIKRVAQS 190 (233)
Q Consensus 159 ~-~~~~~e~~~l~~L~~a~--~~gd~~~a~~~~~~ 190 (233)
. .....-+.+. ...-.+ .+||.+.+..-..+
T Consensus 651 ~~~~~~~~a~~~-~v~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 651 GQYHVDYLAAAY-KVKLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred CCCCchHHHHHH-HhhHHHhcccCCHHHHHHHHHh
Confidence 1 1212222211 111123 58998888877666
No 226
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.70 E-value=0.062 Score=44.45 Aligned_cols=137 Identities=15% Similarity=0.079 Sum_probs=92.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCChHHHHHH
Q 026767 12 MESAAALAKELHNWREVADFYRKASELYNECGRSQPASDALAKAARALE-DAVPEDAIQLYTDACIMLEEDDKEQMAFDL 90 (233)
Q Consensus 12 ~~~~g~~~~~~g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~~~~~~~~ 90 (233)
...+..++.-.|.|.-.++.+.+-.+ .++...-.....+|.+-. -||.+.|-.++++.-+-....+.-.+...+
T Consensus 180 my~~~~~llG~kEy~iS~d~~~~vi~-----~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V 254 (366)
T KOG2796|consen 180 MYSMANCLLGMKEYVLSVDAYHSVIK-----YYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMV 254 (366)
T ss_pred HHHHHHHHhcchhhhhhHHHHHHHHH-----hCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHH
Confidence 33444444445666666676666665 334455566777888877 488888888888655444444444445567
Q ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHHhHccCcchHHHhHHHHHHHHHhhCCHHHHHHHHHHhh-cCCC
Q 026767 91 YRAATNVYIKLEKYADAATFLLRWGLAADKCNATNSQCKAYLSAIIVYLYANDFKQAEKCYNDCS-QVDA 159 (233)
Q Consensus 91 l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~gd~~~A~~~~~~al-~~~~ 159 (233)
..+.+.+|+-..+|..|...|.+.+.. ....+.+-++-++|.+.+|+...|++..+.++ .+|+
T Consensus 255 ~~n~a~i~lg~nn~a~a~r~~~~i~~~------D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~ 318 (366)
T KOG2796|consen 255 LMNSAFLHLGQNNFAEAHRFFTEILRM------DPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPR 318 (366)
T ss_pred HhhhhhheecccchHHHHHHHhhcccc------CCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCc
Confidence 788888888888998888888877642 12223345777888888899999999998887 4453
No 227
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=96.65 E-value=0.074 Score=39.85 Aligned_cols=89 Identities=18% Similarity=0.116 Sum_probs=67.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCChHHH
Q 026767 9 AKHMESAAALAKELHNWREVADFYRKASELYNECGRSQPASDALAKAARALE-DAVPEDAIQLYTDACIMLEEDDKEQMA 87 (233)
Q Consensus 9 a~~~~~~g~~~~~~g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~~~~~ 87 (233)
+..+.+-|.-..+.|+|.+|+..++.-..-|-- |. -+-.+...++.+|. .+++++|+..+++=+++++...+..
T Consensus 10 ~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~-g~--ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vd-- 84 (142)
T PF13512_consen 10 PQELYQEAQEALQKGNYEEAIKQLEALDTRYPF-GE--YAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVD-- 84 (142)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC-Cc--ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCcc--
Confidence 344555566666689999999999887776632 22 23466788999999 7999999999999999999887643
Q ss_pred HHHHHHHHHHHHHhcc
Q 026767 88 FDLYRAATNVYIKLEK 103 (233)
Q Consensus 88 ~~~l~~lg~~~~~~g~ 103 (233)
.++...|.++..+..
T Consensus 85 -Ya~Y~~gL~~~~~~~ 99 (142)
T PF13512_consen 85 -YAYYMRGLSYYEQDE 99 (142)
T ss_pred -HHHHHHHHHHHHHhh
Confidence 367777777776655
No 228
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=96.64 E-value=0.087 Score=44.12 Aligned_cols=17 Identities=18% Similarity=0.167 Sum_probs=8.8
Q ss_pred CHHHHHHHHHHHHHHHH
Q 026767 63 VPEDAIQLYTDACIMLE 79 (233)
Q Consensus 63 ~~~~A~~~~~~Al~~~~ 79 (233)
++.+|..||++|.+.--
T Consensus 128 d~~~A~~~~~~Aa~~g~ 144 (292)
T COG0790 128 DLVKALKYYEKAAKLGN 144 (292)
T ss_pred CHHHHHHHHHHHHHcCC
Confidence 55555555555555533
No 229
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=96.64 E-value=0.0093 Score=50.88 Aligned_cols=93 Identities=15% Similarity=0.061 Sum_probs=68.4
Q ss_pred HHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHccCcchHHHhH
Q 026767 53 AKAARALE-DAVPEDAIQLYTDACIMLEEDDKEQMAFDLYRAATNVYIKLEKYADAATFLLRWGLAADKCNATNSQCKAY 131 (233)
Q Consensus 53 ~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~~~~~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~ 131 (233)
..-|.-|. +|.|++||.+|.+++..++-.. -.+.|-+..|.++.++..|..-|..|+.+- ..-.++|
T Consensus 101 KE~GN~yFKQgKy~EAIDCYs~~ia~~P~Np------V~~~NRA~AYlk~K~FA~AE~DC~~AiaLd------~~Y~KAY 168 (536)
T KOG4648|consen 101 KERGNTYFKQGKYEEAIDCYSTAIAVYPHNP------VYHINRALAYLKQKSFAQAEEDCEAAIALD------KLYVKAY 168 (536)
T ss_pred HHhhhhhhhccchhHHHHHhhhhhccCCCCc------cchhhHHHHHHHHHHHHHHHHhHHHHHHhh------HHHHHHH
Confidence 34455566 7888999999998888776322 256677888888888888888888888652 2334567
Q ss_pred HHHHHHHHhhCCHHHHHHHHHHhhcC
Q 026767 132 LSAIIVYLYANDFKQAEKCYNDCSQV 157 (233)
Q Consensus 132 ~~lg~~~~~~gd~~~A~~~~~~al~~ 157 (233)
..-+.+...+|...+|.+-++.++.+
T Consensus 169 SRR~~AR~~Lg~~~EAKkD~E~vL~L 194 (536)
T KOG4648|consen 169 SRRMQARESLGNNMEAKKDCETVLAL 194 (536)
T ss_pred HHHHHHHHHHhhHHHHHHhHHHHHhh
Confidence 77777788888888888888887744
No 230
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=96.60 E-value=0.065 Score=50.17 Aligned_cols=63 Identities=14% Similarity=0.138 Sum_probs=45.2
Q ss_pred HHHHHHHHHhccHHHHHHHHHHH-------------------HHHHhHccCcchHHHhHHHHHHHHHhhCCHHHHHHHHH
Q 026767 92 RAATNVYIKLEKYADAATFLLRW-------------------GLAADKCNATNSQCKAYLSAIIVYLYANDFKQAEKCYN 152 (233)
Q Consensus 92 ~~lg~~~~~~g~~~~A~~~~~~a-------------------l~~~~~~~~~~~~a~~~~~lg~~~~~~gd~~~A~~~~~ 152 (233)
..-|.-+...|+++.|+-+|-++ +.+...+.++.....-|-.++.-|...|+|+.|.+.|.
T Consensus 710 e~wg~hl~~~~q~daainhfiea~~~~kaieaai~akew~kai~ildniqdqk~~s~yy~~iadhyan~~dfe~ae~lf~ 789 (1636)
T KOG3616|consen 710 EAWGDHLEQIGQLDAAINHFIEANCLIKAIEAAIGAKEWKKAISILDNIQDQKTASGYYGEIADHYANKGDFEIAEELFT 789 (1636)
T ss_pred HHHhHHHHHHHhHHHHHHHHHHhhhHHHHHHHHhhhhhhhhhHhHHHHhhhhccccccchHHHHHhccchhHHHHHHHHH
Confidence 33466677788888888877553 33334445566666666778888889999999999887
Q ss_pred Hh
Q 026767 153 DC 154 (233)
Q Consensus 153 ~a 154 (233)
++
T Consensus 790 e~ 791 (1636)
T KOG3616|consen 790 EA 791 (1636)
T ss_pred hc
Confidence 76
No 231
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.60 E-value=0.025 Score=47.53 Aligned_cols=154 Identities=11% Similarity=0.005 Sum_probs=95.3
Q ss_pred cCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHH
Q 026767 22 LHNWREVADFYRKASELYNECGRSQPASDALAKAARALE-DAVPEDAIQLYTDACIMLEEDDKEQMAFDLYRAATNVYIK 100 (233)
Q Consensus 22 ~g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~~~~~~~~l~~lg~~~~~ 100 (233)
..+|..|+++..- +.+......+ .+.-+|.+|. ..++..|..+|++-..++++....+ .-.+..+.+
T Consensus 23 d~ry~DaI~~l~s----~~Er~p~~rA--gLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYr------lY~AQSLY~ 90 (459)
T KOG4340|consen 23 DARYADAIQLLGS----ELERSPRSRA--GLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYR------LYQAQSLYK 90 (459)
T ss_pred HhhHHHHHHHHHH----HHhcCccchH--HHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHH------HHHHHHHHH
Confidence 4456666655432 2222222222 3667899999 7999999999999998888754221 222333334
Q ss_pred hccHHHHHHHHHH----------------HHHHHhHc--------cCc--chHHHhHHHHHHHHHhhCCHHHHHHHHHHh
Q 026767 101 LEKYADAATFLLR----------------WGLAADKC--------NAT--NSQCKAYLSAIIVYLYANDFKQAEKCYNDC 154 (233)
Q Consensus 101 ~g~~~~A~~~~~~----------------al~~~~~~--------~~~--~~~a~~~~~lg~~~~~~gd~~~A~~~~~~a 154 (233)
.+.|..|+..... ++....+. ... .+.+.+..+.|.+..+.|.|+.|.+-|+.+
T Consensus 91 A~i~ADALrV~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqaA 170 (459)
T KOG4340|consen 91 ACIYADALRVAFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAA 170 (459)
T ss_pred hcccHHHHHHHHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHHHH
Confidence 4444444433322 11111100 111 245667889999999999999999999999
Q ss_pred hcCCCCCCchHHHHHHHHHHHH-hcCCHHHHHHHHhhc
Q 026767 155 SQVDAFLRSDQNRCATKLISAY-TEGDVEEIKRVAQSS 191 (233)
Q Consensus 155 l~~~~~~~~~e~~~l~~L~~a~-~~gd~~~a~~~~~~~ 191 (233)
++..+|.+ -+..+++-++ ..++...|.+++.+-
T Consensus 171 lqvsGyqp----llAYniALaHy~~~qyasALk~iSEI 204 (459)
T KOG4340|consen 171 LQVSGYQP----LLAYNLALAHYSSRQYASALKHISEI 204 (459)
T ss_pred HhhcCCCc----hhHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 98887743 2333455555 788888888777665
No 232
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.58 E-value=0.15 Score=41.70 Aligned_cols=105 Identities=16% Similarity=0.084 Sum_probs=83.0
Q ss_pred HHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhc------CChH------HHHHHHHHHHHHHHHhccHHHHHHHHHH
Q 026767 47 PASDALAKAARALE-DAVPEDAIQLYTDACIMLEED------DKEQ------MAFDLYRAATNVYIKLEKYADAATFLLR 113 (233)
Q Consensus 47 ~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~------g~~~------~~~~~l~~lg~~~~~~g~~~~A~~~~~~ 113 (233)
.+.-++..-|.-+. .|+|.+|...|+.|+...+.. |++. ...-.+.|+..+++..|+|-++++++..
T Consensus 176 kav~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~se 255 (329)
T KOG0545|consen 176 KAVPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSE 255 (329)
T ss_pred hhhHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHH
Confidence 34445666666666 799999999999999887754 2211 1224678999999999999999999998
Q ss_pred HHHHHhHccCcchHHHhHHHHHHHHHhhCCHHHHHHHHHHhhcC
Q 026767 114 WGLAADKCNATNSQCKAYLSAIIVYLYANDFKQAEKCYNDCSQV 157 (233)
Q Consensus 114 al~~~~~~~~~~~~a~~~~~lg~~~~~~gd~~~A~~~~~~al~~ 157 (233)
.+.. ..+..++|+.-+.++...=+..+|..-|..++.+
T Consensus 256 iL~~------~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~l 293 (329)
T KOG0545|consen 256 ILRH------HPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLEL 293 (329)
T ss_pred HHhc------CCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhc
Confidence 8864 4567789999999999999999999999999854
No 233
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=96.43 E-value=0.15 Score=45.70 Aligned_cols=125 Identities=13% Similarity=0.007 Sum_probs=88.3
Q ss_pred HHcCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhCCHHHHHHHHHHHHHHHHhc----------C-------
Q 026767 20 KELHNWREVADFYRKASELYNECGRSQPASDALAKAARALEDAVPEDAIQLYTDACIMLEED----------D------- 82 (233)
Q Consensus 20 ~~~g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~~g~~~~A~~~~~~Al~~~~~~----------g------- 82 (233)
++..+++.-+.+..+|++++. ..|.+|.-++.=- .....+|.++|++|++..+.. |
T Consensus 179 WRERnp~aRIkaA~eALei~p------dCAdAYILLAEEe-A~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~e~~~ 251 (539)
T PF04184_consen 179 WRERNPQARIKAAKEALEINP------DCADAYILLAEEE-ASTIVEAEELLRQAVKAGEASLGKSQFLQHHGHFWEAWH 251 (539)
T ss_pred HhcCCHHHHHHHHHHHHHhhh------hhhHHHhhccccc-ccCHHHHHHHHHHHHHHHHHhhchhhhhhcccchhhhhh
Confidence 346788888999999999873 2334333332200 134678888888888776532 1
Q ss_pred --ChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHccCcchHHHhHHHHHHHHHhhCCHHHHHHHHHHhh
Q 026767 83 --KEQMAFDLYRAATNVYIKLEKYADAATFLLRWGLAADKCNATNSQCKAYLSAIIVYLYANDFKQAEKCYNDCS 155 (233)
Q Consensus 83 --~~~~~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~gd~~~A~~~~~~al 155 (233)
+......+-..++.+.-++|+.++|++.++..+..+ .....-.++.++..+++.++.|.++...+.++-
T Consensus 252 ~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~----p~~~~l~IrenLie~LLelq~Yad~q~lL~kYd 322 (539)
T PF04184_consen 252 RRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEF----PNLDNLNIRENLIEALLELQAYADVQALLAKYD 322 (539)
T ss_pred ccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhC----CccchhhHHHHHHHHHHhcCCHHHHHHHHHHhc
Confidence 111113456789999999999999999999887543 223344578999999999999999999999874
No 234
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.36 E-value=0.47 Score=39.32 Aligned_cols=111 Identities=15% Similarity=0.064 Sum_probs=70.4
Q ss_pred CCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHH----hccHHHHHHHHHHHHHHHhHccCcchHHHhHHHHHHH
Q 026767 62 AVPEDAIQLYTDACIMLEEDDKEQMAFDLYRAATNVYIK----LEKYADAATFLLRWGLAADKCNATNSQCKAYLSAIIV 137 (233)
Q Consensus 62 g~~~~A~~~~~~Al~~~~~~g~~~~~~~~l~~lg~~~~~----~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~ 137 (233)
.+.+-|.+..++..++-.+ .++..++..++. .+++..|.-+|++.- .+.+. ....++..+.|
T Consensus 151 ~r~d~A~~~lk~mq~ided--------~tLtQLA~awv~la~ggek~qdAfyifeE~s---~k~~~---T~~llnG~Av~ 216 (299)
T KOG3081|consen 151 HRFDLAEKELKKMQQIDED--------ATLTQLAQAWVKLATGGEKIQDAFYIFEELS---EKTPP---TPLLLNGQAVC 216 (299)
T ss_pred HHHHHHHHHHHHHHccchH--------HHHHHHHHHHHHHhccchhhhhHHHHHHHHh---cccCC---ChHHHccHHHH
Confidence 4555555555555555443 467777777765 347788888887443 22222 33467889999
Q ss_pred HHhhCCHHHHHHHHHHhhc-CCCCCCchHHHHHHHHHH-HH-hcCCHHHHHHHHhhc
Q 026767 138 YLYANDFKQAEKCYNDCSQ-VDAFLRSDQNRCATKLIS-AY-TEGDVEEIKRVAQSS 191 (233)
Q Consensus 138 ~~~~gd~~~A~~~~~~al~-~~~~~~~~e~~~l~~L~~-a~-~~gd~~~a~~~~~~~ 191 (233)
++.+|+|++|...++.++. .+.. ..+|.++.- +. ...|.+.-.+.+.+-
T Consensus 217 ~l~~~~~eeAe~lL~eaL~kd~~d-----petL~Nliv~a~~~Gkd~~~~~r~l~QL 268 (299)
T KOG3081|consen 217 HLQLGRYEEAESLLEEALDKDAKD-----PETLANLIVLALHLGKDAEVTERNLSQL 268 (299)
T ss_pred HHHhcCHHHHHHHHHHHHhccCCC-----HHHHHHHHHHHHHhCCChHHHHHHHHHH
Confidence 9999999999999999983 3322 455656554 33 355645444444444
No 235
>PF08626 TRAPPC9-Trs120: Transport protein Trs120 or TRAPPC9, TRAPP II complex subunit; InterPro: IPR013935 The trafficking protein particle complex TRAPP is a multi-protein complex needed in the early stages of the secretory pathway. To date, two kinds of TRAPP complexes have been studied, TRAPPI and TRAPP II. These complexes differ in subunit composition []. TRAPP I binds vesicles derived from the endoplasmic reticulum bringing them closer to the acceptor membrane. Trs120 is a subunit specific to the TRAPP II complex [] along with Trs65p and Trs130p(TRAPPC10). It is suggested that Trs120p is required for the stability of the Trs130p subunit, suggesting that these two proteins might interact in some way []. It is likely that there is a complex function for TRAPP II in multiple pathways [].
Probab=96.36 E-value=0.17 Score=50.86 Aligned_cols=142 Identities=15% Similarity=0.075 Sum_probs=99.0
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh-h---C-------------------
Q 026767 6 WDAAKHMESAAALAKELHNWREVADFYRKASELYNECGRSQPASDALAKAARALE-D---A------------------- 62 (233)
Q Consensus 6 ~~~a~~~~~~g~~~~~~g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~-~---g------------------- 62 (233)
...++....+|..|...|++.+|+.+|.+|+++.+..+|.-=.|.++..++.+.. . |
T Consensus 239 r~~gR~~k~~gd~~LlaG~~~dAl~~y~~a~~~~k~~~D~lW~a~alEg~~~~~~l~~~~~~~~qip~i~~~~~~~~~~~ 318 (1185)
T PF08626_consen 239 RCKGRLQKVLGDLYLLAGRWPDALKEYTEAIEILKSSNDYLWLASALEGIAVCLLLLSWLGMDFQIPQICSPLCPISSST 318 (1185)
T ss_pred hhhhhhhhhhhhHHHHcCCHHHHHHHHHHHHHHHhhcCcHhhhHHHHHHHHHHHHHHhccCCCccccchhcccCCCCCcc
Confidence 3567788899999999999999999999999999999999878888877764422 1 1
Q ss_pred -----------------------------------------CHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHh
Q 026767 63 -----------------------------------------VPEDAIQLYTDACIMLEEDDKEQMAFDLYRAATNVYIKL 101 (233)
Q Consensus 63 -----------------------------------------~~~~A~~~~~~Al~~~~~~g~~~~~~~~l~~lg~~~~~~ 101 (233)
.+++++.+|.++.....+.--..-..++..+++.++...
T Consensus 319 ~~~s~~~~~~~~~~sP~~s~~~~~~~~~~~~~~~l~~~i~~~~~~~l~~Y~~~~~~~~~~~p~lv~~E~~lr~~~~l~~~ 398 (1185)
T PF08626_consen 319 SSSSPRNSSSSSTQSPRNSVSSSSSSNIDVNLVNLPNLIPDLYEKALSLYSRSTNDTSEYVPQLVYSEACLRFARFLVAQ 398 (1185)
T ss_pred CccCcccCCccCCCCCCccccCCCccccchhhccCHhhhhHHHHHHHHHHHHhhccccccCcchHHHHHHHHHHHHHHHh
Confidence 134455555555433333333334457888888888888
Q ss_pred c--------------------cHHHHHHHHHHHHHHHhHccCcchHHHhHHHHHHHHHhhCCHHHH
Q 026767 102 E--------------------KYADAATFLLRWGLAADKCNATNSQCKAYLSAIIVYLYANDFKQA 147 (233)
Q Consensus 102 g--------------------~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~gd~~~A 147 (233)
. .-.++.++..++..+....-........|..++.+|-..|-..+.
T Consensus 399 ~~~~~l~~iV~~~~~~~~~~~~~~eI~~~l~~~~~~~l~~l~~~dqi~i~~~lA~vy~~lG~~RK~ 464 (1185)
T PF08626_consen 399 HLSDNLDHIVKRPLTPTPNISSRSEIAEFLFKAFPLQLKDLSVEDQIRIYSGLASVYGSLGFHRKK 464 (1185)
T ss_pred hcccchhhhhccccccccCCCCHHHHHHHHHHhhhhhhhhCCHHHHHHHHHHHHHHHHhcchhHHH
Confidence 7 778888888888776544333445556667777777666654443
No 236
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=96.32 E-value=0.013 Score=34.48 Aligned_cols=28 Identities=21% Similarity=0.184 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHH
Q 026767 90 LYRAATNVYIKLEKYADAATFLLRWGLA 117 (233)
Q Consensus 90 ~l~~lg~~~~~~g~~~~A~~~~~~al~~ 117 (233)
++..+|.+|..+|++++|++.|++++..
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~ 30 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALAL 30 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 5677888888888888888888888865
No 237
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=96.29 E-value=0.085 Score=43.87 Aligned_cols=131 Identities=11% Similarity=0.025 Sum_probs=103.5
Q ss_pred CCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHh
Q 026767 23 HNWREVADFYRKASELYNECGRSQPASDALAKAARALE-DAVPEDAIQLYTDACIMLEEDDKEQMAFDLYRAATNVYIKL 101 (233)
Q Consensus 23 g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~~~~~~~~l~~lg~~~~~~ 101 (233)
..+++|+.-|++.+++--+.|+.. -.++..+-.+.. .+++++-++.|.+-+.+.+..-.+...-.+.+++-+.-.-.
T Consensus 41 ~~p~~Al~sF~kVlelEgEKgeWG--FKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS 118 (440)
T KOG1464|consen 41 DEPKEALSSFQKVLELEGEKGEWG--FKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTS 118 (440)
T ss_pred cCHHHHHHHHHHHHhcccccchhH--HHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhh
Confidence 478999999999999976666653 456788888888 89999999999999999886543333335777777766667
Q ss_pred ccHHHHHHHHHHHHHHHhHccCcchHHHhHHHHHHHHHhhCCHHHHHHHHHHhh
Q 026767 102 EKYADAATFLLRWGLAADKCNATNSQCKAYLSAIIVYLYANDFKQAEKCYNDCS 155 (233)
Q Consensus 102 g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~gd~~~A~~~~~~al 155 (233)
.+.+--.++|+.-+...++..+.+-.-++-..+|.+++..|+|.+-.+.+.+..
T Consensus 119 ~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh 172 (440)
T KOG1464|consen 119 KNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLH 172 (440)
T ss_pred hhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHH
Confidence 777777788888888877777776666777899999999999999888877765
No 238
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=96.26 E-value=0.0047 Score=34.38 Aligned_cols=33 Identities=18% Similarity=0.191 Sum_probs=26.5
Q ss_pred HHHHHHHHHhHccCcchHHHhHHHHHHHHHhhCCHHHHH
Q 026767 110 FLLRWGLAADKCNATNSQCKAYLSAIIVYLYANDFKQAE 148 (233)
Q Consensus 110 ~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~gd~~~A~ 148 (233)
+|++++++ .+..+.+++++|.++...|++++|+
T Consensus 1 ~y~kAie~------~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 1 CYKKAIEL------NPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred ChHHHHHH------CCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 36777765 4556778999999999999999886
No 239
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=96.26 E-value=0.058 Score=53.06 Aligned_cols=152 Identities=15% Similarity=0.039 Sum_probs=119.1
Q ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc--CCchHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhc
Q 026767 5 PWDAAKHMESAAALAKELHNWREVADFYRKASELYNEC--GRSQPASDALAKAARALE-DAVPEDAIQLYTDACIMLEED 81 (233)
Q Consensus 5 ~~~~a~~~~~~g~~~~~~g~~~eA~~~~~~A~~l~~~~--g~~~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~ 81 (233)
....++.|..++.++...++.++|+.+-.+|.-++.+. -|.......+.+++.... ......|+..+.++..+..=.
T Consensus 969 h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls 1048 (1236)
T KOG1839|consen 969 HPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYGNLALYEFAVKNLSGALKSLNRALKLKLLS 1048 (1236)
T ss_pred chhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHhhHHHHHHHhccCccchhhhHHHHHHhhccc
Confidence 34678899999999999999999999999999988763 345667788889987766 688889999999988775422
Q ss_pred ---CChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHccCcch--HHHhHHHHHHHHHhhCCHHHHHHHHHHhhc
Q 026767 82 ---DKEQMAFDLYRAATNVYIKLEKYADAATFLLRWGLAADKCNATNS--QCKAYLSAIIVYLYANDFKQAEKCYNDCSQ 156 (233)
Q Consensus 82 ---g~~~~~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~--~a~~~~~lg~~~~~~gd~~~A~~~~~~al~ 156 (233)
..+.. +.+..+++.++...++++.|+.+.+.|..+......+.. .+.++..++.++-.++++..|..+......
T Consensus 1049 ~ge~hP~~-a~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v~g~~~l~~~~~~~~~a~l~~s~~dfr~al~~ek~t~~ 1127 (1236)
T KOG1839|consen 1049 SGEDHPPT-ALSFINLELLLLGVEEADTALRYLESALAKNKKVLGPKELETALSYHALARLFESMKDFRNALEHEKVTYG 1127 (1236)
T ss_pred cCCCCCch-hhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcCccchhhhhHHHHHHHHHhhhHHHHHHHHHHhhHHH
Confidence 23333 457899999999999999999999999987766544322 344567778888888888888887776653
Q ss_pred C
Q 026767 157 V 157 (233)
Q Consensus 157 ~ 157 (233)
+
T Consensus 1128 i 1128 (1236)
T KOG1839|consen 1128 I 1128 (1236)
T ss_pred H
Confidence 3
No 240
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=96.26 E-value=0.52 Score=38.76 Aligned_cols=171 Identities=11% Similarity=0.082 Sum_probs=110.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCChHHHH
Q 026767 10 KHMESAAALAKELHNWREVADFYRKASELYNECGRSQPASDALAKAARALE-DAVPEDAIQLYTDACIMLEEDDKEQMAF 88 (233)
Q Consensus 10 ~~~~~~g~~~~~~g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~~~~~~ 88 (233)
.-+-+=|..-.+.|++++|+.+|+... .+--+++.. =.+...++..+. .+++++|+....+=+.+++...+-.-
T Consensus 35 ~~LY~~g~~~L~~gn~~~A~~~fe~l~--~~~p~s~~~-~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY-- 109 (254)
T COG4105 35 SELYNEGLTELQKGNYEEAIKYFEALD--SRHPFSPYS-EQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADY-- 109 (254)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHH--HcCCCCccc-HHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhH--
Confidence 334444555556899999999998877 333455543 566777888888 79999999999999999998776443
Q ss_pred HHHHHHHHHHHH-----hccHHHHHHHHHHHHHHHhHccCcc--------------hHHHhHHHHHHHHHhhCCHHHHHH
Q 026767 89 DLYRAATNVYIK-----LEKYADAATFLLRWGLAADKCNATN--------------SQCKAYLSAIIVYLYANDFKQAEK 149 (233)
Q Consensus 89 ~~l~~lg~~~~~-----~g~~~~A~~~~~~al~~~~~~~~~~--------------~~a~~~~~lg~~~~~~gd~~~A~~ 149 (233)
++.-.|..+.. ..|...+...+...-++..+-.+.+ ..+.--..+|..|++.|.+..|..
T Consensus 110 -~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~n 188 (254)
T COG4105 110 -AYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVAAIN 188 (254)
T ss_pred -HHHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHH
Confidence 34444444432 2344444444433333333332221 122223778999999999999999
Q ss_pred HHHHhhcCCCCCCchHHHHHHHHHHHH-hcCCHHHHHHH
Q 026767 150 CYNDCSQVDAFLRSDQNRCATKLISAY-TEGDVEEIKRV 187 (233)
Q Consensus 150 ~~~~al~~~~~~~~~e~~~l~~L~~a~-~~gd~~~a~~~ 187 (233)
.+++.+.... ..+.....|-.|.++| ..|-.+.|...
T Consensus 189 R~~~v~e~y~-~t~~~~eaL~~l~eaY~~lgl~~~a~~~ 226 (254)
T COG4105 189 RFEEVLENYP-DTSAVREALARLEEAYYALGLTDEAKKT 226 (254)
T ss_pred HHHHHHhccc-cccchHHHHHHHHHHHHHhCChHHHHHH
Confidence 9999884421 2234455777888888 66666555543
No 241
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=96.25 E-value=0.003 Score=35.20 Aligned_cols=34 Identities=21% Similarity=0.414 Sum_probs=27.2
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHH
Q 026767 70 LYTDACIMLEEDDKEQMAFDLYRAATNVYIKLEKYADAAT 109 (233)
Q Consensus 70 ~~~~Al~~~~~~g~~~~~~~~l~~lg~~~~~~g~~~~A~~ 109 (233)
+|++|+++.+.. ..+++++|.+|...|++++|++
T Consensus 1 ~y~kAie~~P~n------~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 1 CYKKAIELNPNN------AEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred ChHHHHHHCCCC------HHHHHHHHHHHHHCcCHHhhcC
Confidence 377888887753 3689999999999999999863
No 242
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=96.25 E-value=0.7 Score=40.22 Aligned_cols=129 Identities=13% Similarity=0.121 Sum_probs=90.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCChHHH
Q 026767 9 AKHMESAAALAKELHNWREVADFYRKASELYNECGRSQPASDALAKAARALE-DAVPEDAIQLYTDACIMLEEDDKEQMA 87 (233)
Q Consensus 9 a~~~~~~g~~~~~~g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~~~~~ 87 (233)
|....+-|.+-..-|+|.+|.....++.+. + ..-..++...+..-. .||.+.+-.|..++.+..... ..
T Consensus 84 a~~~~~egl~~l~eG~~~qAEkl~~rnae~----~--e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~---~l- 153 (400)
T COG3071 84 ARKALNEGLLKLFEGDFQQAEKLLRRNAEH----G--EQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDD---TL- 153 (400)
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHhhhc----C--cchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCc---hH-
Confidence 344444455555578898888888775432 2 234556667777777 799999999999887664432 22
Q ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHccCcchHHHhHHHHHHHHHhhCCHHHHHHHHHHh
Q 026767 88 FDLYRAATNVYIKLEKYADAATFLLRWGLAADKCNATNSQCKAYLSAIIVYLYANDFKQAEKCYNDC 154 (233)
Q Consensus 88 ~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~gd~~~A~~~~~~a 154 (233)
.+....+.+....|+|+.|..-..+.++. .+..-.++.-...+|+..|++.+......+.
T Consensus 154 -~v~ltrarlll~~~d~~aA~~~v~~ll~~------~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L 213 (400)
T COG3071 154 -AVELTRARLLLNRRDYPAARENVDQLLEM------TPRHPEVLRLALRAYIRLGAWQALLAILPKL 213 (400)
T ss_pred -HHHHHHHHHHHhCCCchhHHHHHHHHHHh------CcCChHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 25667788899999999999988888764 3333456677788899999988877766543
No 243
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=96.15 E-value=0.45 Score=42.72 Aligned_cols=124 Identities=17% Similarity=0.195 Sum_probs=86.0
Q ss_pred CHHHHHHHHHHHHHHHHHc----------CCc---------hHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCC
Q 026767 24 NWREVADFYRKASELYNEC----------GRS---------QPASDALAKAARALE-DAVPEDAIQLYTDACIMLEEDDK 83 (233)
Q Consensus 24 ~~~eA~~~~~~A~~l~~~~----------g~~---------~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~ 83 (233)
...||..+|++|++.-+.. |.. .-...+-.++|++.. .|+.++|++.++.-++.++..+.
T Consensus 215 Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~ 294 (539)
T PF04184_consen 215 TIVEAEELLRQAVKAGEASLGKSQFLQHHGHFWEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDN 294 (539)
T ss_pred CHHHHHHHHHHHHHHHHHhhchhhhhhcccchhhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccch
Confidence 4689999999999875431 111 111334567788888 79999999999998887764332
Q ss_pred hHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHccCcchHHHhHHHHHHHHHhhCCH---------------HHHH
Q 026767 84 EQMAFDLYRAATNVYIKLEKYADAATFLLRWGLAADKCNATNSQCKAYLSAIIVYLYANDF---------------KQAE 148 (233)
Q Consensus 84 ~~~~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~gd~---------------~~A~ 148 (233)
-.+..++...++.+++|.++..++.+ +.++..+...+-+|...-+-..+-+|- ..|.
T Consensus 295 ----l~IrenLie~LLelq~Yad~q~lL~k----YdDi~lpkSAti~YTaALLkaRav~d~fs~e~a~rRGls~ae~~av 366 (539)
T PF04184_consen 295 ----LNIRENLIEALLELQAYADVQALLAK----YDDISLPKSATICYTAALLKARAVGDKFSPEAASRRGLSPAEMNAV 366 (539)
T ss_pred ----hhHHHHHHHHHHhcCCHHHHHHHHHH----hccccCCchHHHHHHHHHHHHHhhccccCchhhhhcCCChhHHHHH
Confidence 24788999999999999999887776 345555667777776644444444442 2355
Q ss_pred HHHHHhh
Q 026767 149 KCYNDCS 155 (233)
Q Consensus 149 ~~~~~al 155 (233)
+.+.+|+
T Consensus 367 eAi~RAv 373 (539)
T PF04184_consen 367 EAIHRAV 373 (539)
T ss_pred HHHHHHH
Confidence 6677776
No 244
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=96.15 E-value=0.027 Score=48.17 Aligned_cols=97 Identities=13% Similarity=-0.001 Sum_probs=74.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCChHHH
Q 026767 9 AKHMESAAALAKELHNWREVADFYRKASELYNECGRSQPASDALAKAARALE-DAVPEDAIQLYTDACIMLEEDDKEQMA 87 (233)
Q Consensus 9 a~~~~~~g~~~~~~g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~~~~~ 87 (233)
+.-+..-|+-|..+|.|+||++||.+++.++- . -...+.|-+..|. ...+..|..-+..|+.+-+. -
T Consensus 97 ~SEiKE~GN~yFKQgKy~EAIDCYs~~ia~~P-----~-NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~------Y 164 (536)
T KOG4648|consen 97 ASEIKERGNTYFKQGKYEEAIDCYSTAIAVYP-----H-NPVYHINRALAYLKQKSFAQAEEDCEAAIALDKL------Y 164 (536)
T ss_pred hHHHHHhhhhhhhccchhHHHHHhhhhhccCC-----C-CccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHH------H
Confidence 33456778999999999999999999998863 2 2345667777777 68888888888888877653 2
Q ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Q 026767 88 FDLYRAATNVYIKLEKYADAATFLLRWGLA 117 (233)
Q Consensus 88 ~~~l~~lg~~~~~~g~~~~A~~~~~~al~~ 117 (233)
..+|.+-|.....+|...+|-+-|+.++++
T Consensus 165 ~KAYSRR~~AR~~Lg~~~EAKkD~E~vL~L 194 (536)
T KOG4648|consen 165 VKAYSRRMQARESLGNNMEAKKDCETVLAL 194 (536)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHhHHHHHhh
Confidence 356777777778888888888888888765
No 245
>PRK11906 transcriptional regulator; Provisional
Probab=96.14 E-value=0.33 Score=43.22 Aligned_cols=127 Identities=15% Similarity=0.092 Sum_probs=90.1
Q ss_pred HHHHHHHHHHHHHc---------CCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHH
Q 026767 9 AKHMESAAALAKEL---------HNWREVADFYRKASELYNECGRSQPASDALAKAARALE-DAVPEDAIQLYTDACIML 78 (233)
Q Consensus 9 a~~~~~~g~~~~~~---------g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~ 78 (233)
+.+|.-++.++... .+..+|+++.++|+++ +.. -+.++..+|.++. .++++.|+.++++|+.+.
T Consensus 295 a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAvel----d~~--Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~ 368 (458)
T PRK11906 295 TECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDI----TTV--DGKILAIMGLITGLSGQAKVSHILFEQAKIHS 368 (458)
T ss_pred HHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhc----CCC--CHHHHHHHHHHHHhhcchhhHHHHHHHHhhcC
Confidence 55666666665432 1234556666666555 333 3567888899888 788999999999999998
Q ss_pred HhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHccCcchHHHhHHHHHH-HHHhhCCHHHHHHHHHH
Q 026767 79 EEDDKEQMAFDLYRAATNVYIKLEKYADAATFLLRWGLAADKCNATNSQCKAYLSAII-VYLYANDFKQAEKCYND 153 (233)
Q Consensus 79 ~~~g~~~~~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~-~~~~~gd~~~A~~~~~~ 153 (233)
+. .+.++.-.|.++.-.|+.++|++..++++.+ ++...+.....+.. +|.. ...+.|++.|-+
T Consensus 369 Pn------~A~~~~~~~~~~~~~G~~~~a~~~i~~alrL-----sP~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 432 (458)
T PRK11906 369 TD------IASLYYYRALVHFHNEKIEEARICIDKSLQL-----EPRRRKAVVIKECVDMYVP-NPLKNNIKLYYK 432 (458)
T ss_pred Cc------cHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc-----CchhhHHHHHHHHHHHHcC-CchhhhHHHHhh
Confidence 85 3568888999999999999999999999976 34444444455555 5554 457788777654
No 246
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=96.14 E-value=0.078 Score=43.15 Aligned_cols=93 Identities=11% Similarity=-0.048 Sum_probs=43.6
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHH
Q 026767 17 ALAKELHNWREVADFYRKASELYNECGRSQPASDALAKAARALE-DAVPEDAIQLYTDACIMLEEDDKEQMAFDLYRAAT 95 (233)
Q Consensus 17 ~~~~~~g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~~~~~~~~l~~lg 95 (233)
+-|..-.+|+.|+.+|.+|+.+- | .-+.-+.|-+.+|. ..+++....-.++|+++..+ .+....-+|
T Consensus 18 nk~f~~k~y~~ai~~y~raI~~n-----P-~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N------~vk~h~flg 85 (284)
T KOG4642|consen 18 NKCFIPKRYDDAIDCYSRAICIN-----P-TVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPN------LVKAHYFLG 85 (284)
T ss_pred ccccchhhhchHHHHHHHHHhcC-----C-CcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChH------HHHHHHHHH
Confidence 33333444555555555554431 2 23334444445444 35555555555555554442 223444455
Q ss_pred HHHHHhccHHHHHHHHHHHHHHHhHc
Q 026767 96 NVYIKLEKYADAATFLLRWGLAADKC 121 (233)
Q Consensus 96 ~~~~~~g~~~~A~~~~~~al~~~~~~ 121 (233)
........|++|+..++++..+.+..
T Consensus 86 ~~~l~s~~~~eaI~~Lqra~sl~r~~ 111 (284)
T KOG4642|consen 86 QWLLQSKGYDEAIKVLQRAYSLLREQ 111 (284)
T ss_pred HHHHhhccccHHHHHHHHHHHHHhcC
Confidence 55555555555555555555444443
No 247
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=96.11 E-value=0.034 Score=45.15 Aligned_cols=95 Identities=16% Similarity=0.069 Sum_probs=80.2
Q ss_pred HHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHccCcchH
Q 026767 49 SDALAKAARALE-DAVPEDAIQLYTDACIMLEEDDKEQMAFDLYRAATNVYIKLEKYADAATFLLRWGLAADKCNATNSQ 127 (233)
Q Consensus 49 a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~~~~~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 127 (233)
+.-+..=|.-+. ...|+.|+.+|.+|+.+-+.. +..+.|-+.+|++..+++....-+.+++.+ .++.
T Consensus 10 a~qlkE~gnk~f~~k~y~~ai~~y~raI~~nP~~------~~Y~tnralchlk~~~~~~v~~dcrralql------~~N~ 77 (284)
T KOG4642|consen 10 AEQLKEQGNKCFIPKRYDDAIDCYSRAICINPTV------ASYYTNRALCHLKLKHWEPVEEDCRRALQL------DPNL 77 (284)
T ss_pred HHHHHhccccccchhhhchHHHHHHHHHhcCCCc------chhhhhHHHHHHHhhhhhhhhhhHHHHHhc------ChHH
Confidence 333444565666 688999999999999887742 346788899999999999999999999976 5667
Q ss_pred HHhHHHHHHHHHhhCCHHHHHHHHHHhh
Q 026767 128 CKAYLSAIIVYLYANDFKQAEKCYNDCS 155 (233)
Q Consensus 128 a~~~~~lg~~~~~~gd~~~A~~~~~~al 155 (233)
++.++.+|.+.+....|+.|+..++++.
T Consensus 78 vk~h~flg~~~l~s~~~~eaI~~Lqra~ 105 (284)
T KOG4642|consen 78 VKAHYFLGQWLLQSKGYDEAIKVLQRAY 105 (284)
T ss_pred HHHHHHHHHHHHhhccccHHHHHHHHHH
Confidence 8899999999999999999999999995
No 248
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=96.11 E-value=0.011 Score=53.61 Aligned_cols=115 Identities=16% Similarity=0.068 Sum_probs=89.3
Q ss_pred HHHHHHHHHHcCCchHHHHHHHHHHHHhh--hCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHH
Q 026767 32 YRKASELYNECGRSQPASDALAKAARALE--DAVPEDAIQLYTDACIMLEEDDKEQMAFDLYRAATNVYIKLEKYADAAT 109 (233)
Q Consensus 32 ~~~A~~l~~~~g~~~~~a~~l~~lg~~~~--~g~~~~A~~~~~~Al~~~~~~g~~~~~~~~l~~lg~~~~~~g~~~~A~~ 109 (233)
.+-+..++...+.+.+-.++-.|.+.+|. .|++..|+.++.+|+...+...+. .+.+++.++++.|-...|-.
T Consensus 589 ~e~~~~~~~~~~~~~~p~w~~ln~aglywr~~gn~~~a~~cl~~a~~~~p~~~~v-----~~v~la~~~~~~~~~~da~~ 663 (886)
T KOG4507|consen 589 EEIGSFLFHAINKPNAPIWLILNEAGLYWRAVGNSTFAIACLQRALNLAPLQQDV-----PLVNLANLLIHYGLHLDATK 663 (886)
T ss_pred HHHHHHHHHHhcCCCCCeEEEeecccceeeecCCcHHHHHHHHHHhccChhhhcc-----cHHHHHHHHHHhhhhccHHH
Confidence 34445555555555555555455555665 699999999999999887765543 56789999999999999999
Q ss_pred HHHHHHHHHhHccCcchHHHhHHHHHHHHHhhCCHHHHHHHHHHhhcC
Q 026767 110 FLLRWGLAADKCNATNSQCKAYLSAIIVYLYANDFKQAEKCYNDCSQV 157 (233)
Q Consensus 110 ~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~gd~~~A~~~~~~al~~ 157 (233)
++.+++.+. ..+.-.++.+|.+++.+.+.+.|+++|.+++..
T Consensus 664 ~l~q~l~~~------~sepl~~~~~g~~~l~l~~i~~a~~~~~~a~~~ 705 (886)
T KOG4507|consen 664 LLLQALAIN------SSEPLTFLSLGNAYLALKNISGALEAFRQALKL 705 (886)
T ss_pred HHHHHHhhc------ccCchHHHhcchhHHHHhhhHHHHHHHHHHHhc
Confidence 999999874 334456789999999999999999999999844
No 249
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=96.06 E-value=0.91 Score=42.28 Aligned_cols=60 Identities=13% Similarity=0.072 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHhHccCcchHHHhHHHHHHHHHhhCCHHHHHHHHHHhh
Q 026767 90 LYRAATNVYIKLEKYADAATFLLRWGLAADKCNATNSQCKAYLSAIIVYLYANDFKQAEKCYNDCS 155 (233)
Q Consensus 90 ~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~gd~~~A~~~~~~al 155 (233)
++...+.+.-.+++.++|+.++++++..|. .--+.|+.+|.++-.+++.+.|++.|..-+
T Consensus 653 v~mKs~~~er~ld~~eeA~rllEe~lk~fp------~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~ 712 (913)
T KOG0495|consen 653 VWMKSANLERYLDNVEEALRLLEEALKSFP------DFHKLWLMLGQIEEQMENIEMAREAYLQGT 712 (913)
T ss_pred hhHHHhHHHHHhhhHHHHHHHHHHHHHhCC------chHHHHHHHhHHHHHHHHHHHHHHHHHhcc
Confidence 344444444445555555555555554321 112344555555555555555555554443
No 250
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=96.03 E-value=0.099 Score=34.92 Aligned_cols=70 Identities=14% Similarity=0.173 Sum_probs=55.4
Q ss_pred HHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHccCc
Q 026767 52 LAKAARALE-DAVPEDAIQLYTDACIMLEEDDKEQMAFDLYRAATNVYIKLEKYADAATFLLRWGLAADKCNAT 124 (233)
Q Consensus 52 l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~~~~~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 124 (233)
...-|.-+. ..+.++|+..++++++-.....+ ...++..+..+|...|+|.+.+++..+-++++++..++
T Consensus 9 ~ie~GlkLY~~~~~~~Al~~W~~aL~k~~~~~~---rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~~A~eled~ 79 (80)
T PF10579_consen 9 QIEKGLKLYHQNETQQALQKWRKALEKITDRED---RFRVLGYLIQAHMEWGKYREMLAFALQQLEIAEELEDP 79 (80)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHhhcCChHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC
Confidence 333444444 57788999999999988877543 34578889999999999999999999999998887654
No 251
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=96.01 E-value=0.56 Score=40.02 Aligned_cols=128 Identities=15% Similarity=0.083 Sum_probs=91.1
Q ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHH-HHHhc-
Q 026767 5 PWDAAKHMESAAALAKELHNWREVADFYRKASELYNECGRSQPASDALAKAARALE-DAVPEDAIQLYTDACI-MLEED- 81 (233)
Q Consensus 5 ~~~~a~~~~~~g~~~~~~g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~-~~~~~- 81 (233)
+...+..+...+.+.+..|.++-|..++.++.......+.. ...+...-+.++. .|+..+|+..++..+. .....
T Consensus 142 ~~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~--~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~ 219 (352)
T PF02259_consen 142 PEELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESL--LPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNI 219 (352)
T ss_pred hhHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCC--CcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcc
Confidence 56778899999999999999999999988877765433332 2334445566666 7999999999988888 33322
Q ss_pred --------------------------CChHHHHHHHHHHHHHHHHh------ccHHHHHHHHHHHHHHHhHccCcchHHH
Q 026767 82 --------------------------DKEQMAFDLYRAATNVYIKL------EKYADAATFLLRWGLAADKCNATNSQCK 129 (233)
Q Consensus 82 --------------------------g~~~~~~~~l~~lg~~~~~~------g~~~~A~~~~~~al~~~~~~~~~~~~a~ 129 (233)
......+.++..+|...... +.+++++..|++++.+... ..+
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~------~~k 293 (352)
T PF02259_consen 220 DSISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPS------WEK 293 (352)
T ss_pred ccccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChh------HHH
Confidence 13455567888888888888 8899999999999876432 233
Q ss_pred hHHHHHHHHHh
Q 026767 130 AYLSAIIVYLY 140 (233)
Q Consensus 130 ~~~~lg~~~~~ 140 (233)
++...|..+..
T Consensus 294 ~~~~~a~~~~~ 304 (352)
T PF02259_consen 294 AWHSWALFNDK 304 (352)
T ss_pred HHHHHHHHHHH
Confidence 55555555443
No 252
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=95.89 E-value=0.019 Score=30.96 Aligned_cols=28 Identities=21% Similarity=0.288 Sum_probs=20.0
Q ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHH
Q 026767 90 LYRAATNVYIKLEKYADAATFLLRWGLA 117 (233)
Q Consensus 90 ~l~~lg~~~~~~g~~~~A~~~~~~al~~ 117 (233)
++.++|.++.+.|++++|+..|++.++.
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKR 29 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 4667777777777777777777777654
No 253
>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]
Probab=95.87 E-value=0.46 Score=40.69 Aligned_cols=176 Identities=7% Similarity=-0.009 Sum_probs=120.3
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcC-ChHHHHHHH
Q 026767 14 SAAALAKELHNWREVADFYRKASELYNECGRSQPASDALAKAARALE-DAVPEDAIQLYTDACIMLEEDD-KEQMAFDLY 91 (233)
Q Consensus 14 ~~g~~~~~~g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g-~~~~~~~~l 91 (233)
.+..+|...++|.+|+.....-+.=.++..|...-..++.-=..+|. ..+..+|...+.-|-......= .+...+..=
T Consensus 133 rli~Ly~d~~~YteAlaL~~~L~rElKKlDDK~lLvev~llESK~y~~l~Nl~KakasLTsART~AnaiYcpPqlQa~lD 212 (411)
T KOG1463|consen 133 RLIRLYNDTKRYTEALALINDLLRELKKLDDKILLVEVHLLESKAYHALRNLPKAKASLTSARTTANAIYCPPQLQATLD 212 (411)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHhcccccceeeehhhhhHHHHHHhcchhHHHHHHHHHHhhcccccCHHHHHHHH
Confidence 34566777888999999888888888888887766666666677777 6778888777776665555443 233333333
Q ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHHhHccCcchHHHhHHHHHHHHHhhCCHHHHHHHHHHhhcCCCCCCchHHHHHHH
Q 026767 92 RAATNVYIKLEKYADAATFLLRWGLAADKCNATNSQCKAYLSAIIVYLYANDFKQAEKCYNDCSQVDAFLRSDQNRCATK 171 (233)
Q Consensus 92 ~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~gd~~~A~~~~~~al~~~~~~~~~e~~~l~~ 171 (233)
..-|.+|+.-.+|..|..||-+|.+-|...++......++--+.+|-.-.+..++--..+.-=..+. ..++.-.++..
T Consensus 213 LqSGIlha~ekDykTafSYFyEAfEgf~s~~~~v~A~~sLKYMlLcKIMln~~ddv~~lls~K~~l~--y~g~~i~Amka 290 (411)
T KOG1463|consen 213 LQSGILHAAEKDYKTAFSYFYEAFEGFDSLDDDVKALTSLKYMLLCKIMLNLPDDVAALLSAKLALK--YAGRDIDAMKA 290 (411)
T ss_pred HhccceeecccccchHHHHHHHHHccccccCCcHHHHHHHHHHHHHHHHhcCHHHHHHHHhhHHHHh--ccCcchHHHHH
Confidence 4446677777899999999999999998888776666666555555555555554443332111111 22344567888
Q ss_pred HHHHHhcCCHHHHHHHHhhc
Q 026767 172 LISAYTEGDVEEIKRVAQSS 191 (233)
Q Consensus 172 L~~a~~~gd~~~a~~~~~~~ 191 (233)
+++++.+.+...|..++.+|
T Consensus 291 vAeA~~nRSLkdF~~AL~~y 310 (411)
T KOG1463|consen 291 VAEAFGNRSLKDFEKALADY 310 (411)
T ss_pred HHHHhcCCcHHHHHHHHHHh
Confidence 88888878888888887777
No 254
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=95.85 E-value=0.82 Score=38.98 Aligned_cols=115 Identities=11% Similarity=-0.010 Sum_probs=86.2
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhCCHHHHHHHHHHHHHHHHhcCChH
Q 026767 6 WDAAKHMESAAALAKELHNWREVADFYRKASELYNECGRSQPASDALAKAARALEDAVPEDAIQLYTDACIMLEEDDKEQ 85 (233)
Q Consensus 6 ~~~a~~~~~~g~~~~~~g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~~g~~~~A~~~~~~Al~~~~~~g~~~ 85 (233)
....+++.+.+..|.+.||.+.|.+.+.+..+--...|..-..-.+..++|..|. +.+---+..++|-.++++-||+.
T Consensus 101 ~ev~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~--D~~lV~~~iekak~liE~GgDWe 178 (393)
T KOG0687|consen 101 SEVREAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYL--DHDLVTESIEKAKSLIEEGGDWE 178 (393)
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhc--cHHHHHHHHHHHHHHHHhCCChh
Confidence 3467888899999999999999999999888877778887777777778887775 33334455677778888888665
Q ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHcc
Q 026767 86 MAFDLYRAATNVYIKLEKYADAATFLLRWGLAADKCN 122 (233)
Q Consensus 86 ~~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~ 122 (233)
-....-.-.|.......++.+|..+|-.++..+....
T Consensus 179 RrNRlKvY~Gly~msvR~Fk~Aa~Lfld~vsTFtS~E 215 (393)
T KOG0687|consen 179 RRNRLKVYQGLYCMSVRNFKEAADLFLDSVSTFTSYE 215 (393)
T ss_pred hhhhHHHHHHHHHHHHHhHHHHHHHHHHHccccccee
Confidence 5444444556667778899999999988877665543
No 255
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=95.81 E-value=0.34 Score=40.25 Aligned_cols=114 Identities=8% Similarity=-0.043 Sum_probs=69.0
Q ss_pred cCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHh
Q 026767 22 LHNWREVADFYRKASELYNECGRSQPASDALAKAARALEDAVPEDAIQLYTDACIMLEEDDKEQMAFDLYRAATNVYIKL 101 (233)
Q Consensus 22 ~g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~~g~~~~A~~~~~~Al~~~~~~g~~~~~~~~l~~lg~~~~~~ 101 (233)
++++++|++.....+..+.+.|....++..-.-+-.+|.....+-..+...+-++++...+..
T Consensus 3 ~kky~eAidLL~~Ga~~ll~~~Q~~sg~DL~~lliev~~~~~~~~~~~~~~rl~~l~~~~~~~----------------- 65 (260)
T PF04190_consen 3 QKKYDEAIDLLYSGALILLKHGQYGSGADLALLLIEVYEKSEDPVDEESIARLIELISLFPPE----------------- 65 (260)
T ss_dssp TT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT---SHHHHHHHHHHHHHS-TT-----------------
T ss_pred cccHHHHHHHHHHHHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCC-----------------
Confidence 678999999999999988888888777776666666666322211122223333333332211
Q ss_pred ccHHHHHHHHHHHHHHHhHccCcchHHHhHHHHHHHHHhhCCHHHHHHHHHHh
Q 026767 102 EKYADAATFLLRWGLAADKCNATNSQCKAYLSAIIVYLYANDFKQAEKCYNDC 154 (233)
Q Consensus 102 g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~gd~~~A~~~~~~a 154 (233)
-.+=..+..+++......+.+.+....+..+|.++...|++.+|+.+|-.+
T Consensus 66 --~p~r~~fi~~ai~WS~~~~~~~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~ 116 (260)
T PF04190_consen 66 --EPERKKFIKAAIKWSKFGSYKFGDPELHHLLAEKLWKEGNYYEAERHFLLG 116 (260)
T ss_dssp ---TTHHHHHHHHHHHHHTSS-TT--HHHHHHHHHHHHHTT-HHHHHHHHHTS
T ss_pred --cchHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHhc
Confidence 112345556666666444566677778899999999999999999988654
No 256
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=95.80 E-value=0.025 Score=50.38 Aligned_cols=85 Identities=6% Similarity=-0.085 Sum_probs=65.9
Q ss_pred HHHHHHHHHhh-hCCHHHHHHHHHHHHHHHH-hc--C---------ChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Q 026767 50 DALAKAARALE-DAVPEDAIQLYTDACIMLE-ED--D---------KEQMAFDLYRAATNVYIKLEKYADAATFLLRWGL 116 (233)
Q Consensus 50 ~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~-~~--g---------~~~~~~~~l~~lg~~~~~~g~~~~A~~~~~~al~ 116 (233)
..++|+|-|+. .|.|.-++.+|.+|+.-+. +. | ...-...++.|.|..|...|+.-.|.++|.++..
T Consensus 284 if~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~ 363 (696)
T KOG2471|consen 284 IFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVH 363 (696)
T ss_pred eeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHH
Confidence 45689999999 7999999999999996222 11 1 0111236899999999999999999999999999
Q ss_pred HHhHccCcchHHHhHHHHHHHHHh
Q 026767 117 AADKCNATNSQCKAYLSAIIVYLY 140 (233)
Q Consensus 117 ~~~~~~~~~~~a~~~~~lg~~~~~ 140 (233)
.|+.. .+.|+.++.|+..
T Consensus 364 vfh~n------PrlWLRlAEcCim 381 (696)
T KOG2471|consen 364 VFHRN------PRLWLRLAECCIM 381 (696)
T ss_pred HHhcC------cHHHHHHHHHHHH
Confidence 88753 2467788888765
No 257
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.77 E-value=0.21 Score=43.09 Aligned_cols=129 Identities=12% Similarity=0.021 Sum_probs=80.8
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHH----------HHHhcC
Q 026767 14 SAAALAKELHNWREVADFYRKASELYNECGRSQPASDALAKAARALE-DAVPEDAIQLYTDACI----------MLEEDD 82 (233)
Q Consensus 14 ~~g~~~~~~g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~----------~~~~~g 82 (233)
-+|.++..+|+|++|+.-|+-+.+ ..+. -+....+++-++. .|.|.+|...-.+|-+ +.-..+
T Consensus 62 Wia~C~fhLgdY~~Al~~Y~~~~~----~~~~--~~el~vnLAcc~FyLg~Y~eA~~~~~ka~k~pL~~RLlfhlahkln 135 (557)
T KOG3785|consen 62 WIAHCYFHLGDYEEALNVYTFLMN----KDDA--PAELGVNLACCKFYLGQYIEAKSIAEKAPKTPLCIRLLFHLAHKLN 135 (557)
T ss_pred HHHHHHHhhccHHHHHHHHHHHhc----cCCC--CcccchhHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhC
Confidence 366777788999999888876654 2333 3556778888877 7888888766554421 111222
Q ss_pred ChHHHH----------HHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHccCcchHHHhH-HHHHHHHHhhCCHHHHHHHH
Q 026767 83 KEQMAF----------DLYRAATNVYIKLEKYADAATFLLRWGLAADKCNATNSQCKAY-LSAIIVYLYANDFKQAEKCY 151 (233)
Q Consensus 83 ~~~~~~----------~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~-~~lg~~~~~~gd~~~A~~~~ 151 (233)
+..... +-..+++.++...--|.+|++.|.+.+.- ..+-.++ ..+++||.++.-|+-+.+.+
T Consensus 136 dEk~~~~fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~d-------n~ey~alNVy~ALCyyKlDYydvsqevl 208 (557)
T KOG3785|consen 136 DEKRILTFHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQD-------NPEYIALNVYMALCYYKLDYYDVSQEVL 208 (557)
T ss_pred cHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhc-------ChhhhhhHHHHHHHHHhcchhhhHHHHH
Confidence 221111 22334555666666778888888877631 1122223 67889999998888888877
Q ss_pred HHhh
Q 026767 152 NDCS 155 (233)
Q Consensus 152 ~~al 155 (233)
.-++
T Consensus 209 ~vYL 212 (557)
T KOG3785|consen 209 KVYL 212 (557)
T ss_pred HHHH
Confidence 7766
No 258
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=95.61 E-value=0.83 Score=38.23 Aligned_cols=89 Identities=17% Similarity=0.131 Sum_probs=69.4
Q ss_pred hCCHHHHHHHHHHHHHHHHhcC--ChHHHHHHHHHHHHHHHHhc-cHHHHHHHHHHHHHHHhH-c--cCc-----chHHH
Q 026767 61 DAVPEDAIQLYTDACIMLEEDD--KEQMAFDLYRAATNVYIKLE-KYADAATFLLRWGLAADK-C--NAT-----NSQCK 129 (233)
Q Consensus 61 ~g~~~~A~~~~~~Al~~~~~~g--~~~~~~~~l~~lg~~~~~~g-~~~~A~~~~~~al~~~~~-~--~~~-----~~~a~ 129 (233)
+|+++.|..+|.|+-.+..... .....+..+.++|.-....+ +|+.|+..++++.+++.. . ... .-...
T Consensus 6 ~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~~ 85 (278)
T PF08631_consen 6 QGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRLS 85 (278)
T ss_pred hCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHHH
Confidence 6999999999999998885222 33445678899999999999 999999999999999754 1 111 23567
Q ss_pred hHHHHHHHHHhhCCHHHHHH
Q 026767 130 AYLSAIIVYLYANDFKQAEK 149 (233)
Q Consensus 130 ~~~~lg~~~~~~gd~~~A~~ 149 (233)
++..++.+|+..+.++...+
T Consensus 86 iL~~La~~~l~~~~~~~~~k 105 (278)
T PF08631_consen 86 ILRLLANAYLEWDTYESVEK 105 (278)
T ss_pred HHHHHHHHHHcCCChHHHHH
Confidence 78999999999888765544
No 259
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.55 E-value=0.17 Score=46.65 Aligned_cols=98 Identities=15% Similarity=0.140 Sum_probs=75.0
Q ss_pred HHHHHHHhhhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHccCcchHHHhH
Q 026767 52 LAKAARALEDAVPEDAIQLYTDACIMLEEDDKEQMAFDLYRAATNVYIKLEKYADAATFLLRWGLAADKCNATNSQCKAY 131 (233)
Q Consensus 52 l~~lg~~~~~g~~~~A~~~~~~Al~~~~~~g~~~~~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~ 131 (233)
|+.++..+...+|..++++|..++..+........-+...+++..+|..+.+.|+|.+++++|-+.- +...-+-
T Consensus 358 Wn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d------~~~~l~q 431 (872)
T KOG4814|consen 358 WNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVD------RQSPLCQ 431 (872)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhc------cccHHHH
Confidence 4455666667899999999999999988776333337899999999999999999999999987541 1122233
Q ss_pred HHHHHHHHhhCCHHHHHHHHHHhh
Q 026767 132 LSAIIVYLYANDFKQAEKCYNDCS 155 (233)
Q Consensus 132 ~~lg~~~~~~gd~~~A~~~~~~al 155 (233)
+.+..+....|...+|+.+.....
T Consensus 432 ~~~~~~~~~E~~Se~AL~~~~~~~ 455 (872)
T KOG4814|consen 432 LLMLQSFLAEDKSEEALTCLQKIK 455 (872)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHH
Confidence 455566667789999999888765
No 260
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=95.51 E-value=0.035 Score=31.73 Aligned_cols=32 Identities=13% Similarity=0.137 Sum_probs=24.9
Q ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHhH
Q 026767 89 DLYRAATNVYIKLEKYADAATFLLRWGLAADK 120 (233)
Q Consensus 89 ~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~ 120 (233)
.++..+|++-+..++|++|+.-|++++++.++
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i~~~ 33 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALEIQEE 33 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 46777888888888888888888888877654
No 261
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=95.50 E-value=0.45 Score=43.91 Aligned_cols=114 Identities=17% Similarity=0.158 Sum_probs=78.1
Q ss_pred HHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhC------CHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHH
Q 026767 25 WREVADFYRKASELYNECGRSQPASDALAKAARALEDA------VPEDAIQLYTDACIMLEEDDKEQMAFDLYRAATNVY 98 (233)
Q Consensus 25 ~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~~g------~~~~A~~~~~~Al~~~~~~g~~~~~~~~l~~lg~~~ 98 (233)
..+|..+|+.+... +-..+...+|.+|..| |++.|+.+|+.|++-+...-... -..+...+|.+|
T Consensus 228 ~~~a~~~~~~~a~~--------g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~-~~~a~~~lg~~Y 298 (552)
T KOG1550|consen 228 LSEAFKYYREAAKL--------GHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG-LPPAQYGLGRLY 298 (552)
T ss_pred hhHHHHHHHHHHhh--------cchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc-CCccccHHHHHH
Confidence 45677777777654 3445566788887753 88999999999988422211100 112567888888
Q ss_pred HHhc-----cHHHHHHHHHHHHHHHhHccCcchHHHhHHHHHHHHHhhC---CHHHHHHHHHHhh
Q 026767 99 IKLE-----KYADAATFLLRWGLAADKCNATNSQCKAYLSAIIVYLYAN---DFKQAEKCYNDCS 155 (233)
Q Consensus 99 ~~~g-----~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g---d~~~A~~~~~~al 155 (233)
.+.. ++..|+.+|.++... +.+ .+.+.+|.++.... |+.+|.++|..|.
T Consensus 299 ~~g~~~~~~d~~~A~~~~~~aA~~----g~~----~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa 355 (552)
T KOG1550|consen 299 LQGLGVEKIDYEKALKLYTKAAEL----GNP----DAQYLLGVLYETGTKERDYRRAFEYYSLAA 355 (552)
T ss_pred hcCCCCccccHHHHHHHHHHHHhc----CCc----hHHHHHHHHHHcCCccccHHHHHHHHHHHH
Confidence 8743 788899999988753 333 35577888887765 5789999998885
No 262
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=95.50 E-value=0.32 Score=48.09 Aligned_cols=184 Identities=12% Similarity=0.052 Sum_probs=132.8
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH-HcCC-chHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcC-
Q 026767 7 DAAKHMESAAALAKELHNWREVADFYRKASELYN-ECGR-SQPASDALAKAARALE-DAVPEDAIQLYTDACIMLEEDD- 82 (233)
Q Consensus 7 ~~a~~~~~~g~~~~~~g~~~eA~~~~~~A~~l~~-~~g~-~~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g- 82 (233)
+.++.+...|......+.+.++.+ .-+++.++. ..|- ....+.+|.-++.++. .|++++|+.+-.+|+-+.+..-
T Consensus 930 ~~a~~~~e~gq~~~~e~~~~~~~~-~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g 1008 (1236)
T KOG1839|consen 930 SEAKDSPEQGQEALLEDGFSEAYE-LPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLG 1008 (1236)
T ss_pred chhhhhhhhhhhhhcccchhhhhh-hhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhcc
Confidence 345556666666666888999999 888888886 3333 4567889999999999 7999999999999998887653
Q ss_pred -ChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhH-cc-CcchHHHhHHHHHHHHHhhCCHHHHHHHHHHhhcCCC
Q 026767 83 -KEQMAFDLYRAATNVYIKLEKYADAATFLLRWGLAADK-CN-ATNSQCKAYLSAIIVYLYANDFKQAEKCYNDCSQVDA 159 (233)
Q Consensus 83 -~~~~~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~-~~-~~~~~a~~~~~lg~~~~~~gd~~~A~~~~~~al~~~~ 159 (233)
+...-...+.+++......+....|+..+.+++.+..= .+ +.+..+....+++.+++..++++.|.++.+.|.....
T Consensus 1009 ~ds~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~~~ 1088 (1236)
T KOG1839|consen 1009 KDSPNTKLAYGNLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALAKNK 1088 (1236)
T ss_pred CCCHHHHHHhhHHHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHHHh
Confidence 33333467888888888888999999999998875421 12 3455566678999999999999999999999984322
Q ss_pred --CC--CchHHHHHHHHHHHH-hcCCHHHHHHHHhhc
Q 026767 160 --FL--RSDQNRCATKLISAY-TEGDVEEIKRVAQSS 191 (233)
Q Consensus 160 --~~--~~~e~~~l~~L~~a~-~~gd~~~a~~~~~~~ 191 (233)
+. .-..+..-..+++.+ ..+|+..+..+.+..
T Consensus 1089 ~v~g~~~l~~~~~~~~~a~l~~s~~dfr~al~~ek~t 1125 (1236)
T KOG1839|consen 1089 KVLGPKELETALSYHALARLFESMKDFRNALEHEKVT 1125 (1236)
T ss_pred hhcCccchhhhhHHHHHHHHHhhhHHHHHHHHHHhhH
Confidence 21 123333444555566 466766666555544
No 263
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=95.42 E-value=0.2 Score=38.98 Aligned_cols=68 Identities=10% Similarity=0.113 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHHHhccH---HHHHHHHHHHHHHHhHc-cCcchHHHhHHHHHHHHHhhC----CHHHHHHHHHHhh
Q 026767 88 FDLYRAATNVYIKLEKY---ADAATFLLRWGLAADKC-NATNSQCKAYLSAIIVYLYAN----DFKQAEKCYNDCS 155 (233)
Q Consensus 88 ~~~l~~lg~~~~~~g~~---~~A~~~~~~al~~~~~~-~~~~~~a~~~~~lg~~~~~~g----d~~~A~~~~~~al 155 (233)
++.+++-|.++.++.++ .++.++++.|+.-+++. ...+....++.++|.+|...+ |..+|..+|++|.
T Consensus 25 adnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~ 100 (186)
T PF06552_consen 25 ADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKAT 100 (186)
T ss_dssp HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHH
Confidence 45777777777776554 34556666665544331 223445567888888887764 4445555555543
No 264
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=95.37 E-value=0.052 Score=48.41 Aligned_cols=98 Identities=12% Similarity=0.121 Sum_probs=68.8
Q ss_pred hCCHHHHHHHHHHHHHHHHhcC--ChHH--HHHHHHHHHHHHHHhccHHHHHHHHHHHHH-HHhHccCc-----------
Q 026767 61 DAVPEDAIQLYTDACIMLEEDD--KEQM--AFDLYRAATNVYIKLEKYADAATFLLRWGL-AADKCNAT----------- 124 (233)
Q Consensus 61 ~g~~~~A~~~~~~Al~~~~~~g--~~~~--~~~~l~~lg~~~~~~g~~~~A~~~~~~al~-~~~~~~~~----------- 124 (233)
.|++.+|.+.+..+ .+.+..| ...+ .....+|+|.++.++|.|.-++.+|.+|+. .+.+...-
T Consensus 253 ~gn~~kA~KlL~~s-ni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~ 331 (696)
T KOG2471|consen 253 HGNHPKAMKLLLVS-NIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQ 331 (696)
T ss_pred hcchHHHHHHHHhc-ccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhc
Confidence 68888877766543 3333333 1111 222348999999999999999999999994 44433211
Q ss_pred chHHHhHHHHHHHHHhhCCHHHHHHHHHHhhcCCC
Q 026767 125 NSQCKAYLSAIIVYLYANDFKQAEKCYNDCSQVDA 159 (233)
Q Consensus 125 ~~~a~~~~~lg~~~~~~gd~~~A~~~~~~al~~~~ 159 (233)
......+++.|+.|++.|++-.|.++|.+++..+.
T Consensus 332 nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh 366 (696)
T KOG2471|consen 332 NKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFH 366 (696)
T ss_pred ccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHh
Confidence 11234569999999999999999999999985543
No 265
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.35 E-value=0.31 Score=40.48 Aligned_cols=101 Identities=11% Similarity=0.061 Sum_probs=85.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCChHHHHH
Q 026767 11 HMESAAALAKELHNWREVADFYRKASELYNECGRSQPASDALAKAARALE-DAVPEDAIQLYTDACIMLEEDDKEQMAFD 89 (233)
Q Consensus 11 ~~~~~g~~~~~~g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~~~~~~~ 89 (233)
....+|.+-.+.||.+-|-.+|++.-..-...........++.+.+.+|. ..++..|...|.+.+..-.+. ..
T Consensus 214 L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~------~~ 287 (366)
T KOG2796|consen 214 LLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRN------AV 287 (366)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCc------hh
Confidence 34567888888999999999999888777778888888999999999999 899999999998877554321 24
Q ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHH
Q 026767 90 LYRAATNVYIKLEKYADAATFLLRWGLA 117 (233)
Q Consensus 90 ~l~~lg~~~~~~g~~~~A~~~~~~al~~ 117 (233)
+.++-+.++..+|+...|++..+.++..
T Consensus 288 a~NnKALcllYlg~l~DAiK~~e~~~~~ 315 (366)
T KOG2796|consen 288 ANNNKALCLLYLGKLKDALKQLEAMVQQ 315 (366)
T ss_pred hhchHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 6788999999999999999999988864
No 266
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=95.31 E-value=1.4 Score=36.69 Aligned_cols=95 Identities=14% Similarity=0.002 Sum_probs=49.4
Q ss_pred HHHHHHHHHhhhCCHHHHHHHHHHHHHHHHhc---CChHHHHHHHHHHHHHHHHhc-------cHHHHHHHHHHHHHHHh
Q 026767 50 DALAKAARALEDAVPEDAIQLYTDACIMLEED---DKEQMAFDLYRAATNVYIKLE-------KYADAATFLLRWGLAAD 119 (233)
Q Consensus 50 ~~l~~lg~~~~~g~~~~A~~~~~~Al~~~~~~---g~~~~~~~~l~~lg~~~~~~g-------~~~~A~~~~~~al~~~~ 119 (233)
....++|.+|..|+. ...-+.+|+.+++.. |+... +.+...+|..|..-. +...|+..|.++....
T Consensus 110 ~a~~~lg~~~~~G~g--v~~d~~~A~~~~~~Aa~~g~~~a-~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~- 185 (292)
T COG0790 110 EALFNLGLMYANGRG--VPLDLVKALKYYEKAAKLGNVEA-ALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG- 185 (292)
T ss_pred HHHHhHHHHHhcCCC--cccCHHHHHHHHHHHHHcCChhH-HHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc-
Confidence 344556666665442 223556666666543 22221 233556666655431 2225555555555432
Q ss_pred HccCcchHHHhHHHHHHHHHhh----CCHHHHHHHHHHhh
Q 026767 120 KCNATNSQCKAYLSAIIVYLYA----NDFKQAEKCYNDCS 155 (233)
Q Consensus 120 ~~~~~~~~a~~~~~lg~~~~~~----gd~~~A~~~~~~al 155 (233)
...+.+.+|.+|..- -|+.+|...|.++.
T Consensus 186 -------~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa 218 (292)
T COG0790 186 -------NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAA 218 (292)
T ss_pred -------CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHH
Confidence 234556667666442 26777777777765
No 267
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.07 E-value=1.1 Score=35.05 Aligned_cols=149 Identities=13% Similarity=0.054 Sum_probs=92.5
Q ss_pred HHHcCCHHHHHHHHHHHHHHHHHcCCchHH---------------HHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcC
Q 026767 19 AKELHNWREVADFYRKASELYNECGRSQPA---------------SDALAKAARALE-DAVPEDAIQLYTDACIMLEEDD 82 (233)
Q Consensus 19 ~~~~g~~~eA~~~~~~A~~l~~~~g~~~~~---------------a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g 82 (233)
|++.++-..+.+.|..|+++....+.-... ..+..++|.+.. .|+-..|+.+|..+..--.--.
T Consensus 49 yw~~s~as~sgd~flaAL~lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~ 128 (221)
T COG4649 49 YWQTSRASKSGDAFLAALKLAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQ 128 (221)
T ss_pred hhcccccccchHHHHHHHHHHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcc
Confidence 556667777777888888776654433221 223455566666 6999999998887653322111
Q ss_pred ChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHccCcchHHHhHHHHHHHHHhhCCHHHHHHHHHHhhcCCCC--
Q 026767 83 KEQMAFDLYRAATNVYIKLEKYADAATFLLRWGLAADKCNATNSQCKAYLSAIIVYLYANDFKQAEKCYNDCSQVDAF-- 160 (233)
Q Consensus 83 ~~~~~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~gd~~~A~~~~~~al~~~~~-- 160 (233)
-.+. .+..+.+.+++..|-|++-....+.. .- ...+....+.-.||+.-.+.||+..|...|.+......-
T Consensus 129 ~~rd--~ARlraa~lLvD~gsy~dV~srvepL---a~--d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~Da~apr 201 (221)
T COG4649 129 IGRD--LARLRAAYLLVDNGSYDDVSSRVEPL---AG--DGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIANDAQAPR 201 (221)
T ss_pred hhhH--HHHHHHHHHHhccccHHHHHHHhhhc---cC--CCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHccccCcH
Confidence 1111 34556677888899998876644422 11 122333445678999999999999999999998754332
Q ss_pred CCchHHHHHHHHHH
Q 026767 161 LRSDQNRCATKLIS 174 (233)
Q Consensus 161 ~~~~e~~~l~~L~~ 174 (233)
+-...+.++..|+.
T Consensus 202 nirqRAq~mldlI~ 215 (221)
T COG4649 202 NIRQRAQIMLDLID 215 (221)
T ss_pred HHHHHHHHHHHHHh
Confidence 22344555555543
No 268
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=95.04 E-value=0.49 Score=43.71 Aligned_cols=131 Identities=14% Similarity=0.137 Sum_probs=89.4
Q ss_pred HHHHHHHHHHHHH-----cCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhC------CHHHHHHHHHHHHHH
Q 026767 9 AKHMESAAALAKE-----LHNWREVADFYRKASELYNECGRSQPASDALAKAARALEDA------VPEDAIQLYTDACIM 77 (233)
Q Consensus 9 a~~~~~~g~~~~~-----~g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~~g------~~~~A~~~~~~Al~~ 77 (233)
..+...+|.+|.. ..|++.|+.++..|+.-+.+.-.. +-..+...+|.+|..| ++..|+.+|.+|.+.
T Consensus 244 ~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~-~~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~ 322 (552)
T KOG1550|consen 244 SEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATK-GLPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAEL 322 (552)
T ss_pred hHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhh-cCCccccHHHHHHhcCCCCccccHHHHHHHHHHHHhc
Confidence 3455566666653 357999999999998853221111 1223577889998853 567788888887654
Q ss_pred HHhcCChHHHHHHHHHHHHHHHHhc---cHHHHHHHHHHHHHHHhHccCcchHHHhHHHHHHHHHhh----CCHHHHHHH
Q 026767 78 LEEDDKEQMAFDLYRAATNVYIKLE---KYADAATFLLRWGLAADKCNATNSQCKAYLSAIIVYLYA----NDFKQAEKC 150 (233)
Q Consensus 78 ~~~~g~~~~~~~~l~~lg~~~~~~g---~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~----gd~~~A~~~ 150 (233)
|.+ .+...+|.++..-. ++.+|..+|..|.. .+...+...++.||..- -+...|..+
T Consensus 323 ----g~~----~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~--------~G~~~A~~~la~~y~~G~gv~r~~~~A~~~ 386 (552)
T KOG1550|consen 323 ----GNP----DAQYLLGVLYETGTKERDYRRAFEYYSLAAK--------AGHILAIYRLALCYELGLGVERNLELAFAY 386 (552)
T ss_pred ----CCc----hHHHHHHHHHHcCCccccHHHHHHHHHHHHH--------cCChHHHHHHHHHHHhCCCcCCCHHHHHHH
Confidence 222 46677888877544 67899999999884 34445677888887653 378899999
Q ss_pred HHHhhc
Q 026767 151 YNDCSQ 156 (233)
Q Consensus 151 ~~~al~ 156 (233)
+.++..
T Consensus 387 ~k~aA~ 392 (552)
T KOG1550|consen 387 YKKAAE 392 (552)
T ss_pred HHHHHH
Confidence 988863
No 269
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=95.04 E-value=2.2 Score=37.45 Aligned_cols=177 Identities=12% Similarity=0.096 Sum_probs=114.6
Q ss_pred HHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHH
Q 026767 28 VADFYRKASELYNECGRSQPASDALAKAARALE-DAVPEDAIQLYTDACIMLEEDDKEQMAFDLYRAATNVYIKLEKYAD 106 (233)
Q Consensus 28 A~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~~~~~~~~l~~lg~~~~~~g~~~~ 106 (233)
-.+-.+.=+..|+..+-....-.++..+|.-|. -|+.+.|++.|.|+-++....+. ......++-.|-+..|+|..
T Consensus 129 ~le~L~~eLk~yK~n~iKEsiRra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~kh---vInm~ln~i~VSI~~~nw~h 205 (466)
T KOG0686|consen 129 KLEKLDNELKSYKDNLIKESIRRALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKH---VINMCLNLILVSIYMGNWGH 205 (466)
T ss_pred HHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHH---HHHHHHHHHHHHHhhcchhh
Confidence 344455556667766666777788999999999 79999999999998888876653 34566677788888999988
Q ss_pred HHHHHHHHHHHHhH--ccCcchHHHhHHHHHHHHHhhCCHHHHHHHHHHhh-cCCCC--CCchHHHHHHHHHHHHhcCCH
Q 026767 107 AATFLLRWGLAADK--CNATNSQCKAYLSAIIVYLYANDFKQAEKCYNDCS-QVDAF--LRSDQNRCATKLISAYTEGDV 181 (233)
Q Consensus 107 A~~~~~~al~~~~~--~~~~~~~a~~~~~lg~~~~~~gd~~~A~~~~~~al-~~~~~--~~~~e~~~l~~L~~a~~~gd~ 181 (233)
-..+-.+|...... .-.+...++..-..|++++.+++|..|.++|-.+. ....+ .-+...........|++.-|.
T Consensus 206 v~sy~~~A~st~~~~~~~~q~v~~kl~C~agLa~L~lkkyk~aa~~fL~~~~~~~d~~~ivtpsdv~iYggLcALAtfdr 285 (466)
T KOG0686|consen 206 VLSYISKAESTPDANENLAQEVPAKLKCAAGLANLLLKKYKSAAKYFLLAEFDHCDYPEIVTPSDVAIYGGLCALATFDR 285 (466)
T ss_pred hhhHHHHHHhCchhhhhHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHhCCCCccCccceecchhhHHHHhhHhhccCCH
Confidence 88888777654200 00111123344566778888889999999998875 22222 123344455555556655555
Q ss_pred HHHHHHHhhc----ccccchHHHHHHhccC
Q 026767 182 EEIKRVAQSS----AISNLDHVIIKLARKL 207 (233)
Q Consensus 182 ~~a~~~~~~~----~~~~ld~~~~~l~~~l 207 (233)
......+-.. .|-.+++....|..+.
T Consensus 286 ~~Lk~~vi~n~~Fk~flel~Pqlr~il~~f 315 (466)
T KOG0686|consen 286 QDLKLNVIKNESFKLFLELEPQLREILFKF 315 (466)
T ss_pred HHHHHHHHcchhhhhHHhcChHHHHHHHHH
Confidence 5554332222 5555666655554443
No 270
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=95.01 E-value=0.31 Score=39.33 Aligned_cols=94 Identities=9% Similarity=-0.066 Sum_probs=66.2
Q ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCC
Q 026767 5 PWDAAKHMESAAALAKELHNWREVADFYRKASELYNECGRSQPASDALAKAARALE-DAVPEDAIQLYTDACIMLEEDDK 83 (233)
Q Consensus 5 ~~~~a~~~~~~g~~~~~~g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~ 83 (233)
+..-|..+..-|+.|-..|-++-|.--|.+++.+. ...+.+++-+|..+. .|+++.|.+.|..-+++-+.-+
T Consensus 61 ~eeRA~l~fERGvlYDSlGL~~LAR~DftQaLai~------P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~- 133 (297)
T COG4785 61 DEERAQLLFERGVLYDSLGLRALARNDFSQALAIR------PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYN- 133 (297)
T ss_pred hHHHHHHHHHhcchhhhhhHHHHHhhhhhhhhhcC------CCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcch-
Confidence 34567777888888888888888888888888885 356778899999888 7999999999888887755432
Q ss_pred hHHHHHHHHHHHHHHHHhccHHHHHHH
Q 026767 84 EQMAFDLYRAATNVYIKLEKYADAATF 110 (233)
Q Consensus 84 ~~~~~~~l~~lg~~~~~~g~~~~A~~~ 110 (233)
.+..|-|..+.--|+|.-|.+-
T Consensus 134 -----Ya~lNRgi~~YY~gR~~LAq~d 155 (297)
T COG4785 134 -----YAHLNRGIALYYGGRYKLAQDD 155 (297)
T ss_pred -----HHHhccceeeeecCchHhhHHH
Confidence 2333334444444555544443
No 271
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=95.01 E-value=0.071 Score=31.22 Aligned_cols=29 Identities=24% Similarity=0.234 Sum_probs=14.3
Q ss_pred HHHHHHHhh-hCCHHHHHHHHHHHHHHHHh
Q 026767 52 LAKAARALE-DAVPEDAIQLYTDACIMLEE 80 (233)
Q Consensus 52 l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~ 80 (233)
+..+|.+|. .|++++|++.|+++++..++
T Consensus 4 ~~~la~~~~~~G~~~~A~~~~~~~l~~~P~ 33 (44)
T PF13428_consen 4 WLALARAYRRLGQPDEAERLLRRALALDPD 33 (44)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence 344455555 45555555555555555443
No 272
>KOG3024 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.98 E-value=1.8 Score=36.14 Aligned_cols=194 Identities=10% Similarity=0.043 Sum_probs=132.7
Q ss_pred CCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhh--------------------
Q 026767 2 LSSPWDAAKHMESAAALAKELHNWREVADFYRKASELYNECGRSQPASDALAKAARALED-------------------- 61 (233)
Q Consensus 2 ~~~~~~~a~~~~~~g~~~~~~g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~~-------------------- 61 (233)
+|+++.+-.+|..+.+-|-.++.++.|++..-..+..+-+.+....++....-+..+++.
T Consensus 19 ~~d~Yeahqm~RTl~fR~~~~K~~~~aieL~~~ga~~ffk~~Q~~saaDl~~~~le~~eka~~ad~~~~~anl~~ll~e~ 98 (312)
T KOG3024|consen 19 LGDYYEAHQMYRTLVFRYTRQKAHEDAIELLYDGALCFFKLKQRGSAADLLVLVLEVLEKAEVADSLLKVANLAELLGEA 98 (312)
T ss_pred cccHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHhhHhHHHHHHHHHHHhhc
Confidence 468899999999999999999999999998877777777777666666655555444432
Q ss_pred -CCHHHHHHHHHHHHHHHHhcC-ChHHHHHHHHHHHHHHHHhccHHHHHHHHHHH----------HHHHhHccCcchHHH
Q 026767 62 -AVPEDAIQLYTDACIMLEEDD-KEQMAFDLYRAATNVYIKLEKYADAATFLLRW----------GLAADKCNATNSQCK 129 (233)
Q Consensus 62 -g~~~~A~~~~~~Al~~~~~~g-~~~~~~~~l~~lg~~~~~~g~~~~A~~~~~~a----------l~~~~~~~~~~~~a~ 129 (233)
..-.+=..+.++++++-.+.+ -+.+-...+.-+|..+..-+++.+|..+|-.+ ++.....+.....-.
T Consensus 99 ~~~eper~~~v~raikWS~~~~~~k~G~p~lH~~la~~l~~e~~~~~a~~HFll~~d~s~~a~~ll~y~~~r~f~~e~d~ 178 (312)
T KOG3024|consen 99 DPSEPERKTFVRRAIKWSKEFGEGKYGHPELHALLADKLWTEDNVEEARRHFLLSEDGSKFAYMLLEYSMSRGFKSEPDV 178 (312)
T ss_pred CCCccHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcccHHHHHhHhhhcCChHHHHHHHHHHHhhcccccCchH
Confidence 122234467788888888742 22233357788999999999999999888653 111111122221223
Q ss_pred hHHHHHHHHHhhCCHHHHHHHHHHhhcC-------------------CCCCCchHHHHHHHHHHHHhcCCHHHHHHHHhh
Q 026767 130 AYLSAIIVYLYANDFKQAEKCYNDCSQV-------------------DAFLRSDQNRCATKLISAYTEGDVEEIKRVAQS 190 (233)
Q Consensus 130 ~~~~lg~~~~~~gd~~~A~~~~~~al~~-------------------~~~~~~~e~~~l~~L~~a~~~gd~~~a~~~~~~ 190 (233)
.+.....=|+-..+...|...+..+... +-+.....-.++.-|...+..+|...+......
T Consensus 179 f~~~aVlq~L~len~~~A~~s~t~yt~~f~~k~~p~~e~~~~~~~k~~~~~~~pllNFl~~Ll~t~~~k~~~~f~~L~~~ 258 (312)
T KOG3024|consen 179 FYVQAVLQYLCLENDSSAARSFTTYTSMFNMKDFPMDEIKHKAGTKNPFPFEYPLLNFLHFLLETIQRKDLPLFLMLRVK 258 (312)
T ss_pred HHHHHHHHHHhhcchHHHHHHHHHHHHhhccccccchhhcccccccCCCccccchHHHHHHHHHHHhccccHHHHHHHHH
Confidence 3456666677788999999988887751 111223455678888888889999999999998
Q ss_pred c--cccc
Q 026767 191 S--AISN 195 (233)
Q Consensus 191 ~--~~~~ 195 (233)
| .+++
T Consensus 259 Y~~slkr 265 (312)
T KOG3024|consen 259 YQPSLKR 265 (312)
T ss_pred ccchhhh
Confidence 8 4444
No 273
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=94.86 E-value=2.1 Score=36.13 Aligned_cols=188 Identities=11% Similarity=0.091 Sum_probs=126.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh--hCCHHHHHHHHHHHHHHHHhcCChHHH
Q 026767 10 KHMESAAALAKELHNWREVADFYRKASELYNECGRSQPASDALAKAARALE--DAVPEDAIQLYTDACIMLEEDDKEQMA 87 (233)
Q Consensus 10 ~~~~~~g~~~~~~g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~--~g~~~~A~~~~~~Al~~~~~~g~~~~~ 87 (233)
.+..+++.+|-..|++..-.+.....-+.+...-.+ ..+.+...+-..+. ...++.-+......+++.....+....
T Consensus 46 ~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~-k~~KiirtLiekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr 124 (421)
T COG5159 46 ATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKP-KITKIIRTLIEKFPYSSDSLEDQIKVLTALIEWADREKRKFLR 124 (421)
T ss_pred HHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcch-hHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667777777787776666666666665554444 34555555555555 367889999999999999888766555
Q ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHccCcchHHHhHHHHHHHHHhhCCHHHHHHHHHHhh--cCCCCCCchH
Q 026767 88 FDLYRAATNVYIKLEKYADAATFLLRWGLAADKCNATNSQCKAYLSAIIVYLYANDFKQAEKCYNDCS--QVDAFLRSDQ 165 (233)
Q Consensus 88 ~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~gd~~~A~~~~~~al--~~~~~~~~~e 165 (233)
-..-..+..++.+.|.|.+|+....-.+.-+.+..+......++.--..+|....+..++...+.-|. ....++++.-
T Consensus 125 ~~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li~vhllESKvyh~irnv~KskaSLTaArt~Ans~YCPpql 204 (421)
T COG5159 125 LELECKLIYLLYKTGKYSDALALINPLLHELKKYDDKINLITVHLLESKVYHEIRNVSKSKASLTAARTLANSAYCPPQL 204 (421)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccceeehhhhhHHHHHHHHhhhhhhhHHHHHHHHhhccCCCHHH
Confidence 55667889999999999999999888887777777777766667777777777777777777776654 3333454333
Q ss_pred HHHHHHHHH-HH-hcCCHHHHHHHHhhc--ccccchH
Q 026767 166 NRCATKLIS-AY-TEGDVEEIKRVAQSS--AISNLDH 198 (233)
Q Consensus 166 ~~~l~~L~~-a~-~~gd~~~a~~~~~~~--~~~~ld~ 198 (233)
..-+.-+-- .+ +..|+..|-.++-++ -|..++.
T Consensus 205 qa~lDL~sGIlhcdd~dyktA~SYF~Ea~Egft~l~~ 241 (421)
T COG5159 205 QAQLDLLSGILHCDDRDYKTASSYFIEALEGFTLLKM 241 (421)
T ss_pred HHHHHHhccceeeccccchhHHHHHHHHHhccccccc
Confidence 222222221 22 567777777766655 4554443
No 274
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=94.83 E-value=0.042 Score=29.56 Aligned_cols=28 Identities=18% Similarity=0.126 Sum_probs=14.2
Q ss_pred HHHHHHHhh-hCCHHHHHHHHHHHHHHHH
Q 026767 52 LAKAARALE-DAVPEDAIQLYTDACIMLE 79 (233)
Q Consensus 52 l~~lg~~~~-~g~~~~A~~~~~~Al~~~~ 79 (233)
+.++|.++. .|++++|+..|++.++-|+
T Consensus 3 ~~~~a~~~~~~g~~~~A~~~~~~~~~~~P 31 (33)
T PF13174_consen 3 LYRLARCYYKLGDYDEAIEYFQRLIKRYP 31 (33)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHCc
Confidence 444555555 4555555555555554443
No 275
>PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex []. Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ].
Probab=94.82 E-value=2.7 Score=37.33 Aligned_cols=107 Identities=18% Similarity=0.137 Sum_probs=80.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh-hCC-------HHHHHHHHHHHHHHHHhc-
Q 026767 11 HMESAAALAKELHNWREVADFYRKASELYNECGRSQPASDALAKAARALE-DAV-------PEDAIQLYTDACIMLEED- 81 (233)
Q Consensus 11 ~~~~~g~~~~~~g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~-~g~-------~~~A~~~~~~Al~~~~~~- 81 (233)
-+..+|..+..++||+-|...|+-+..=|..-.-..-.|-++.=+|..+. .+. .+....+++.|+..|...
T Consensus 210 q~R~LAD~aFml~Dy~~A~s~Y~~~k~Df~~Dkaw~~~A~~~Em~alsl~~~~~~~~~k~~~~~~~~~le~A~~~Y~~~~ 289 (414)
T PF12739_consen 210 QMRRLADLAFMLRDYELAYSTYRLLKKDFKNDKAWKYLAGAQEMAALSLLMQGQSISAKIRKDEIEPYLENAYYTYLKSA 289 (414)
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHHHHhhchhHHHHHhHHHHHHHHHHhcCCCCccccccccHHHHHHHHHHHHHhhh
Confidence 35678888888999999999999999988765556666666766666655 332 247778888899888883
Q ss_pred ----CChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Q 026767 82 ----DKEQMAFDLYRAATNVYIKLEKYADAATFLLRWGLA 117 (233)
Q Consensus 82 ----g~~~~~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~ 117 (233)
.....+..+..-.+.++...|.|.+|...+-+....
T Consensus 290 ~~~~~~~~~a~R~~ll~~ell~~~~~~~~a~~~~~~~~~~ 329 (414)
T PF12739_consen 290 LPRCSLPYYALRCALLLAELLKSRGGYWEAADQLIRWTSE 329 (414)
T ss_pred ccccccccchHHHHHHHHHHHHhcCccHHHHHHHHHHHHH
Confidence 233456678888888888899998888877777654
No 276
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=94.69 E-value=0.07 Score=27.41 Aligned_cols=28 Identities=21% Similarity=0.241 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHH
Q 026767 90 LYRAATNVYIKLEKYADAATFLLRWGLA 117 (233)
Q Consensus 90 ~l~~lg~~~~~~g~~~~A~~~~~~al~~ 117 (233)
++.++|.++...+++++|+..|++++.+
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~ 30 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALEL 30 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHcc
Confidence 4566777777777777777777776643
No 277
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.60 E-value=0.53 Score=40.69 Aligned_cols=87 Identities=14% Similarity=0.098 Sum_probs=64.3
Q ss_pred HhhhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHccCcchHHHhHHHHHHH
Q 026767 58 ALEDAVPEDAIQLYTDACIMLEEDDKEQMAFDLYRAATNVYIKLEKYADAATFLLRWGLAADKCNATNSQCKAYLSAIIV 137 (233)
Q Consensus 58 ~~~~g~~~~A~~~~~~Al~~~~~~g~~~~~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~ 137 (233)
.+...||..|+..++-....-++.. ..+-.-+|.++..+|+|.+|+..|+-+.. ..+. .+....+++.|
T Consensus 32 fls~rDytGAislLefk~~~~~EEE-----~~~~lWia~C~fhLgdY~~Al~~Y~~~~~----~~~~--~~el~vnLAcc 100 (557)
T KOG3785|consen 32 FLSNRDYTGAISLLEFKLNLDREEE-----DSLQLWIAHCYFHLGDYEEALNVYTFLMN----KDDA--PAELGVNLACC 100 (557)
T ss_pred HHhcccchhHHHHHHHhhccchhhh-----HHHHHHHHHHHHhhccHHHHHHHHHHHhc----cCCC--CcccchhHHHH
Confidence 3445788888888877775544433 23556789999999999999999986653 1222 24456899999
Q ss_pred HHhhCCHHHHHHHHHHhh
Q 026767 138 YLYANDFKQAEKCYNDCS 155 (233)
Q Consensus 138 ~~~~gd~~~A~~~~~~al 155 (233)
++.+|.|.+|...-+++-
T Consensus 101 ~FyLg~Y~eA~~~~~ka~ 118 (557)
T KOG3785|consen 101 KFYLGQYIEAKSIAEKAP 118 (557)
T ss_pred HHHHHHHHHHHHHHhhCC
Confidence 999999999998888774
No 278
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=94.50 E-value=2.5 Score=35.56 Aligned_cols=115 Identities=12% Similarity=0.032 Sum_probs=74.2
Q ss_pred hCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHH---------------HHHHHhHc----
Q 026767 61 DAVPEDAIQLYTDACIMLEEDDKEQMAFDLYRAATNVYIKLEKYADAATFLLR---------------WGLAADKC---- 121 (233)
Q Consensus 61 ~g~~~~A~~~~~~Al~~~~~~g~~~~~~~~l~~lg~~~~~~g~~~~A~~~~~~---------------al~~~~~~---- 121 (233)
.|++.+|...+..++...++.+ .+...++++|+..|+.+.|...+.. -+++....
T Consensus 147 ~e~~~~a~~~~~~al~~~~~~~------~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~ 220 (304)
T COG3118 147 AEDFGEAAPLLKQALQAAPENS------EAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATP 220 (304)
T ss_pred ccchhhHHHHHHHHHHhCcccc------hHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCC
Confidence 4777777777777777666542 3455566667777766666555533 12222211
Q ss_pred ---------cCcchHHHhHHHHHHHHHhhCCHHHHHHHHHHhh-cCCCCCCchHHHHHHHHHHHHhcCCH
Q 026767 122 ---------NATNSQCKAYLSAIIVYLYANDFKQAEKCYNDCS-QVDAFLRSDQNRCATKLISAYTEGDV 181 (233)
Q Consensus 122 ---------~~~~~~a~~~~~lg~~~~~~gd~~~A~~~~~~al-~~~~~~~~~e~~~l~~L~~a~~~gd~ 181 (233)
...+......+.++..+...|+++.|.+.+-..+ ...++.+..-.+-+..+.+++..+|+
T Consensus 221 ~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~~Dp 290 (304)
T COG3118 221 EIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGPADP 290 (304)
T ss_pred CHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCCCCH
Confidence 1222334456889999999999999999888776 55566666666667777777767776
No 279
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=94.44 E-value=0.79 Score=37.71 Aligned_cols=107 Identities=12% Similarity=0.050 Sum_probs=83.9
Q ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc------CCch------HHHHHHHHHHHHhh-hCCHHHHHHHH
Q 026767 5 PWDAAKHMESAAALAKELHNWREVADFYRKASELYNEC------GRSQ------PASDALAKAARALE-DAVPEDAIQLY 71 (233)
Q Consensus 5 ~~~~a~~~~~~g~~~~~~g~~~eA~~~~~~A~~l~~~~------g~~~------~~a~~l~~lg~~~~-~g~~~~A~~~~ 71 (233)
+..+..++.+=|+-+...|+|.||...|..|+...+.+ |++. ...-.+.|...++. .|+|-+++++.
T Consensus 174 Kmkav~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~ 253 (329)
T KOG0545|consen 174 KMKAVPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHC 253 (329)
T ss_pred hhhhhHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHH
Confidence 34566778888988878999999999999999987643 4432 12235677788888 69999999998
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Q 026767 72 TDACIMLEEDDKEQMAFDLYRAATNVYIKLEKYADAATFLLRWGLA 117 (233)
Q Consensus 72 ~~Al~~~~~~g~~~~~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~ 117 (233)
...+...+. -..++..-|..+...=+.++|..-|.+++++
T Consensus 254 seiL~~~~~------nvKA~frRakAhaa~Wn~~eA~~D~~~vL~l 293 (329)
T KOG0545|consen 254 SEILRHHPG------NVKAYFRRAKAHAAVWNEAEAKADLQKVLEL 293 (329)
T ss_pred HHHHhcCCc------hHHHHHHHHHHHHhhcCHHHHHHHHHHHHhc
Confidence 888776653 2367888888888888999999999999875
No 280
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=94.34 E-value=0.07 Score=27.40 Aligned_cols=27 Identities=22% Similarity=0.361 Sum_probs=15.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 026767 11 HMESAAALAKELHNWREVADFYRKASE 37 (233)
Q Consensus 11 ~~~~~g~~~~~~g~~~eA~~~~~~A~~ 37 (233)
++.++|.++...+++++|+.+|++++.
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~ 29 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALE 29 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHc
Confidence 455556666666666666666665554
No 281
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=94.34 E-value=2 Score=39.96 Aligned_cols=142 Identities=10% Similarity=0.027 Sum_probs=83.2
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH------cCCchHHHHHHHHH------HHHhh-hCCHHHHHHHHHHH
Q 026767 8 AAKHMESAAALAKELHNWREVADFYRKASELYNE------CGRSQPASDALAKA------ARALE-DAVPEDAIQLYTDA 74 (233)
Q Consensus 8 ~a~~~~~~g~~~~~~g~~~eA~~~~~~A~~l~~~------~g~~~~~a~~l~~l------g~~~~-~g~~~~A~~~~~~A 74 (233)
.+..|.+-|.+-.+..+++.|+.+.++|..+=.. -|...-++++++.+ +..-+ .|-++.-...|.+.
T Consensus 424 La~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdri 503 (835)
T KOG2047|consen 424 LAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRI 503 (835)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 3555555555555555666666666665532110 12222334333322 22222 24444444555555
Q ss_pred HHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHccCcchHHHhHHHHHHHHHhhCCHHHHHHHHHHh
Q 026767 75 CIMLEEDDKEQMAFDLYRAATNVYIKLEKYADAATFLLRWGLAADKCNATNSQCKAYLSAIIVYLYANDFKQAEKCYNDC 154 (233)
Q Consensus 75 l~~~~~~g~~~~~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~gd~~~A~~~~~~a 154 (233)
+++--... .+..|.|.++.+..-+.+|.+.|++.+.++. -......-..|+.-..-....-..+.|+..|++|
T Consensus 504 idLriaTP------qii~NyAmfLEeh~yfeesFk~YErgI~LFk-~p~v~diW~tYLtkfi~rygg~klEraRdLFEqa 576 (835)
T KOG2047|consen 504 IDLRIATP------QIIINYAMFLEEHKYFEESFKAYERGISLFK-WPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQA 576 (835)
T ss_pred HHHhcCCH------HHHHHHHHHHHhhHHHHHHHHHHHcCCccCC-CccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 54443321 4677899999999999999999999998874 2233344455555555555555799999999999
Q ss_pred hc
Q 026767 155 SQ 156 (233)
Q Consensus 155 l~ 156 (233)
+.
T Consensus 577 L~ 578 (835)
T KOG2047|consen 577 LD 578 (835)
T ss_pred Hh
Confidence 94
No 282
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=94.02 E-value=0.085 Score=27.21 Aligned_cols=23 Identities=26% Similarity=0.205 Sum_probs=13.0
Q ss_pred hHHHHHHHHHhhCCHHHHHHHHH
Q 026767 130 AYLSAIIVYLYANDFKQAEKCYN 152 (233)
Q Consensus 130 ~~~~lg~~~~~~gd~~~A~~~~~ 152 (233)
++..+|.++..+||+++|+..++
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHh
Confidence 34555666666666666655544
No 283
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=93.98 E-value=0.17 Score=28.92 Aligned_cols=29 Identities=21% Similarity=0.087 Sum_probs=14.0
Q ss_pred HHHHHHHHhh-hCCHHHHHHHHHHHHHHHH
Q 026767 51 ALAKAARALE-DAVPEDAIQLYTDACIMLE 79 (233)
Q Consensus 51 ~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~ 79 (233)
++..+|.+-. .++|++|+.-|++|+++.+
T Consensus 3 v~~~Lgeisle~e~f~qA~~D~~~aL~i~~ 32 (38)
T PF10516_consen 3 VYDLLGEISLENENFEQAIEDYEKALEIQE 32 (38)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence 4444444444 4455555555555554443
No 284
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=93.79 E-value=1.9 Score=40.54 Aligned_cols=33 Identities=15% Similarity=0.356 Sum_probs=26.6
Q ss_pred ChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Q 026767 83 KEQMAFDLYRAATNVYIKLEKYADAATFLLRWG 115 (233)
Q Consensus 83 ~~~~~~~~l~~lg~~~~~~g~~~~A~~~~~~al 115 (233)
+..+.-.+.+++|..+..+..+.+|.++|.+..
T Consensus 791 dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~ 823 (1189)
T KOG2041|consen 791 DDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCG 823 (1189)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 344455788999999999999999999998764
No 285
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=93.78 E-value=0.022 Score=48.46 Aligned_cols=90 Identities=21% Similarity=0.126 Sum_probs=70.6
Q ss_pred HHHHhhhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHccCcchHHHhHHHH
Q 026767 55 AARALEDAVPEDAIQLYTDACIMLEEDDKEQMAFDLYRAATNVYIKLEKYADAATFLLRWGLAADKCNATNSQCKAYLSA 134 (233)
Q Consensus 55 lg~~~~~g~~~~A~~~~~~Al~~~~~~g~~~~~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~l 134 (233)
....+..|.++.|+++|.+|+++-.. .+..+.+-+.+++++++...|+.-|..++++ ....+.-|-.-
T Consensus 121 A~eAln~G~~~~ai~~~t~ai~lnp~------~a~l~~kr~sv~lkl~kp~~airD~d~A~ei------n~Dsa~~ykfr 188 (377)
T KOG1308|consen 121 ASEALNDGEFDTAIELFTSAIELNPP------LAILYAKRASVFLKLKKPNAAIRDCDFAIEI------NPDSAKGYKFR 188 (377)
T ss_pred HHHHhcCcchhhhhcccccccccCCc------hhhhcccccceeeeccCCchhhhhhhhhhcc------Ccccccccchh
Confidence 34445578899999999999887663 4567788889999999999999999988865 33445556667
Q ss_pred HHHHHhhCCHHHHHHHHHHhhc
Q 026767 135 IIVYLYANDFKQAEKCYNDCSQ 156 (233)
Q Consensus 135 g~~~~~~gd~~~A~~~~~~al~ 156 (233)
|..+..+|++++|.+.++.++.
T Consensus 189 g~A~rllg~~e~aa~dl~~a~k 210 (377)
T KOG1308|consen 189 GYAERLLGNWEEAAHDLALACK 210 (377)
T ss_pred hHHHHHhhchHHHHHHHHHHHh
Confidence 7888888999999999988873
No 286
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=93.69 E-value=0.2 Score=40.36 Aligned_cols=99 Identities=10% Similarity=-0.006 Sum_probs=80.6
Q ss_pred chHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHccC
Q 026767 45 SQPASDALAKAARALE-DAVPEDAIQLYTDACIMLEEDDKEQMAFDLYRAATNVYIKLEKYADAATFLLRWGLAADKCNA 123 (233)
Q Consensus 45 ~~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~~~~~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~ 123 (233)
....|..+..-|..|. .|=..-|.--|.+++.+.+.. ..+++-+|..+...|+|+.|.+.|.-.+++
T Consensus 61 ~eeRA~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m------~~vfNyLG~Yl~~a~~fdaa~eaFds~~EL------ 128 (297)
T COG4785 61 DEERAQLLFERGVLYDSLGLRALARNDFSQALAIRPDM------PEVFNYLGIYLTQAGNFDAAYEAFDSVLEL------ 128 (297)
T ss_pred hHHHHHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCc------HHHHHHHHHHHHhcccchHHHHHhhhHhcc------
Confidence 4566777778888888 688888888899999988864 368999999999999999999999988875
Q ss_pred cchHHHhHHHHHHHHHhhCCHHHHHHHHHHhh
Q 026767 124 TNSQCKAYLSAIIVYLYANDFKQAEKCYNDCS 155 (233)
Q Consensus 124 ~~~~a~~~~~lg~~~~~~gd~~~A~~~~~~al 155 (233)
.++--.+..|-|+....-|+|.-|.+-+.+..
T Consensus 129 Dp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fY 160 (297)
T COG4785 129 DPTYNYAHLNRGIALYYGGRYKLAQDDLLAFY 160 (297)
T ss_pred CCcchHHHhccceeeeecCchHhhHHHHHHHH
Confidence 23333466888888888899999988887765
No 287
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=93.68 E-value=0.96 Score=32.36 Aligned_cols=93 Identities=13% Similarity=0.019 Sum_probs=54.7
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHcCCc----hHHHHHHHHHHHHhhhCCHH-------HHHHHHHHHHHHHHhcCCh
Q 026767 16 AALAKELHNWREVADFYRKASELYNECGRS----QPASDALAKAARALEDAVPE-------DAIQLYTDACIMLEEDDKE 84 (233)
Q Consensus 16 g~~~~~~g~~~eA~~~~~~A~~l~~~~g~~----~~~a~~l~~lg~~~~~g~~~-------~A~~~~~~Al~~~~~~g~~ 84 (233)
+.-+...|++-+|++..+..+-......+. ..++.++..+|...+ +++ .|++.|.++..+.+.
T Consensus 3 A~~~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~te--n~d~k~~yLl~sve~~s~a~~Lsp~---- 76 (111)
T PF04781_consen 3 AKDYFARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKKTE--NPDVKFRYLLGSVECFSRAVELSPD---- 76 (111)
T ss_pred HHHHHHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHhcc--CchHHHHHHHHhHHHHHHHhccChh----
Confidence 445667899999999999988776554442 233334444444333 444 445555555554443
Q ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Q 026767 85 QMAFDLYRAATNVYIKLEKYADAATFLLRWGL 116 (233)
Q Consensus 85 ~~~~~~l~~lg~~~~~~g~~~~A~~~~~~al~ 116 (233)
.+..+..+|.-+-...-|.+++.-.++++.
T Consensus 77 --~A~~L~~la~~l~s~~~Ykk~v~kak~~Ls 106 (111)
T PF04781_consen 77 --SAHSLFELASQLGSVKYYKKAVKKAKRGLS 106 (111)
T ss_pred --HHHHHHHHHHHhhhHHHHHHHHHHHHHHhc
Confidence 255666666665555556666666665553
No 288
>PF08626 TRAPPC9-Trs120: Transport protein Trs120 or TRAPPC9, TRAPP II complex subunit; InterPro: IPR013935 The trafficking protein particle complex TRAPP is a multi-protein complex needed in the early stages of the secretory pathway. To date, two kinds of TRAPP complexes have been studied, TRAPPI and TRAPP II. These complexes differ in subunit composition []. TRAPP I binds vesicles derived from the endoplasmic reticulum bringing them closer to the acceptor membrane. Trs120 is a subunit specific to the TRAPP II complex [] along with Trs65p and Trs130p(TRAPPC10). It is suggested that Trs120p is required for the stability of the Trs130p subunit, suggesting that these two proteins might interact in some way []. It is likely that there is a complex function for TRAPP II in multiple pathways [].
Probab=93.62 E-value=2.4 Score=42.90 Aligned_cols=146 Identities=14% Similarity=0.044 Sum_probs=100.9
Q ss_pred hHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhc----------------------
Q 026767 46 QPASDALAKAARALE-DAVPEDAIQLYTDACIMLEEDDKEQMAFDLYRAATNVYIKLE---------------------- 102 (233)
Q Consensus 46 ~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~~~~~~~~l~~lg~~~~~~g---------------------- 102 (233)
...++....+|.++. .|++..|+++|..|+++.+..+|..+.+.++..++.+.+-.+
T Consensus 239 r~~gR~~k~~gd~~LlaG~~~dAl~~y~~a~~~~k~~~D~lW~a~alEg~~~~~~l~~~~~~~~qip~i~~~~~~~~~~~ 318 (1185)
T PF08626_consen 239 RCKGRLQKVLGDLYLLAGRWPDALKEYTEAIEILKSSNDYLWLASALEGIAVCLLLLSWLGMDFQIPQICSPLCPISSST 318 (1185)
T ss_pred hhhhhhhhhhhhHHHHcCCHHHHHHHHHHHHHHHhhcCcHhhhHHHHHHHHHHHHHHhccCCCccccchhcccCCCCCcc
Confidence 356778888899999 699999999999999999999999999999988876543111
Q ss_pred -----------------------------------------cHHHHHHHHHHHHHHHhHccCcchHHHhHHHHHHHHHhh
Q 026767 103 -----------------------------------------KYADAATFLLRWGLAADKCNATNSQCKAYLSAIIVYLYA 141 (233)
Q Consensus 103 -----------------------------------------~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~ 141 (233)
.+++|+.+|.++.....+--.......+...++..+...
T Consensus 319 ~~~s~~~~~~~~~~sP~~s~~~~~~~~~~~~~~~l~~~i~~~~~~~l~~Y~~~~~~~~~~~p~lv~~E~~lr~~~~l~~~ 398 (1185)
T PF08626_consen 319 SSSSPRNSSSSSTQSPRNSVSSSSSSNIDVNLVNLPNLIPDLYEKALSLYSRSTNDTSEYVPQLVYSEACLRFARFLVAQ 398 (1185)
T ss_pred CccCcccCCccCCCCCCccccCCCccccchhhccCHhhhhHHHHHHHHHHHHhhccccccCcchHHHHHHHHHHHHHHHh
Confidence 334455555554432222122233344455566665555
Q ss_pred C--------------------CHHHHHHHHHHhhcC--CCCCCchHHHHHHHHHHHH-hcCCHHHHHHHHhhc
Q 026767 142 N--------------------DFKQAEKCYNDCSQV--DAFLRSDQNRCATKLISAY-TEGDVEEIKRVAQSS 191 (233)
Q Consensus 142 g--------------------d~~~A~~~~~~al~~--~~~~~~~e~~~l~~L~~a~-~~gd~~~a~~~~~~~ 191 (233)
. .-.++.....+++.. ........+.++..|+..| .-|=..+..-.++..
T Consensus 399 ~~~~~l~~iV~~~~~~~~~~~~~~eI~~~l~~~~~~~l~~l~~~dqi~i~~~lA~vy~~lG~~RK~AFvlR~l 471 (1185)
T PF08626_consen 399 HLSDNLDHIVKRPLTPTPNISSRSEIAEFLFKAFPLQLKDLSVEDQIRIYSGLASVYGSLGFHRKKAFVLREL 471 (1185)
T ss_pred hcccchhhhhccccccccCCCCHHHHHHHHHHhhhhhhhhCCHHHHHHHHHHHHHHHHhcchhHHHHHHHHHH
Confidence 5 566777777777632 2234567788999999999 678777777777777
No 289
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=93.35 E-value=4.1 Score=35.67 Aligned_cols=134 Identities=11% Similarity=0.047 Sum_probs=75.6
Q ss_pred HHHHHHHHHH---cCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh-h---------CCHHHHHHHHHHHHHHH
Q 026767 12 MESAAALAKE---LHNWREVADFYRKASELYNECGRSQPASDALAKAARALE-D---------AVPEDAIQLYTDACIML 78 (233)
Q Consensus 12 ~~~~g~~~~~---~g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~-~---------g~~~~A~~~~~~Al~~~ 78 (233)
-...|.++.+ .|+.++|++.+..++.-- + ......+.-+|.+|. . ...++|+.+|.++-++-
T Consensus 182 ~~~yafALnRrn~~gdre~Al~il~~~l~~~---~--~~~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~ 256 (374)
T PF13281_consen 182 KFQYAFALNRRNKPGDREKALQILLPVLESD---E--NPDPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIE 256 (374)
T ss_pred HHHHHHHHhhcccCCCHHHHHHHHHHHHhcc---C--CCChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCC
Confidence 4466777776 889999998888873321 1 123345555666655 2 24688888888887766
Q ss_pred HhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH-HH---HhHccCcch--HHHhHHHHHHHHHhhCCHHHHHHHHH
Q 026767 79 EEDDKEQMAFDLYRAATNVYIKLEKYADAATFLLRWG-LA---ADKCNATNS--QCKAYLSAIIVYLYANDFKQAEKCYN 152 (233)
Q Consensus 79 ~~~g~~~~~~~~l~~lg~~~~~~g~~~~A~~~~~~al-~~---~~~~~~~~~--~a~~~~~lg~~~~~~gd~~~A~~~~~ 152 (233)
+. . ..=.|++.++.-.|.-.+...-.++.. .+ .-+.+.... ..-.+-.+..+..-.||+++|.+.++
T Consensus 257 ~~---~----Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e 329 (374)
T PF13281_consen 257 PD---Y----YSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKMQDYWDVATLLEASVLAGDYEKAIQAAE 329 (374)
T ss_pred cc---c----cchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 32 1 122355555555554333333333322 11 111121111 11223456666777889999999988
Q ss_pred HhhcC
Q 026767 153 DCSQV 157 (233)
Q Consensus 153 ~al~~ 157 (233)
++...
T Consensus 330 ~~~~l 334 (374)
T PF13281_consen 330 KAFKL 334 (374)
T ss_pred HHhhc
Confidence 88744
No 290
>KOG4322 consensus Anaphase-promoting complex (APC), subunit 5 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=93.31 E-value=0.78 Score=40.44 Aligned_cols=141 Identities=9% Similarity=-0.083 Sum_probs=75.4
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhh-CCHHHHHHHHHHHHHHHHhcCChHHHHHHHHH
Q 026767 15 AAALAKELHNWREVADFYRKASELYNECGRSQPASDALAKAARALED-AVPEDAIQLYTDACIMLEEDDKEQMAFDLYRA 93 (233)
Q Consensus 15 ~g~~~~~~g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~g~~~~~~~~l~~ 93 (233)
-+.++.....+..|.....+..--...-......+.++-.++.++.. +..-.+..+.-+++....+-......+.+-.+
T Consensus 279 ~A~il~A~~q~s~A~~ll~kL~vqc~k~~~~em~~sVLL~~ae~~~~g~~a~l~lplaL~~~~~~sey~ldyl~a~~~L~ 358 (482)
T KOG4322|consen 279 FAHILHADEQVSYAYALLNKLMVQCDKGCNEEMLHSVLLTIAEARESGDTACLNLPLALMFEFKRSEYSLDYLEANENLD 358 (482)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHHHHhccchhhhhchHH
Confidence 33333333344444444444433333333344455555556666663 44455666666666665555555555556666
Q ss_pred HHHHHHHhccHHHHHHHHHHHHHHHhHccCcchHHHhHHHHHHHHHh------hCCHHHHHHHHHHhh
Q 026767 94 ATNVYIKLEKYADAATFLLRWGLAADKCNATNSQCKAYLSAIIVYLY------ANDFKQAEKCYNDCS 155 (233)
Q Consensus 94 lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~------~gd~~~A~~~~~~al 155 (233)
++..+.-+|-..+|...+..++....-.|.....+++++..+.|+++ ..+.+.+.++++++.
T Consensus 359 LAl~~L~LG~pk~Al~lLh~a~h~Il~~GgL~drara~fvfanC~lA~a~s~~~e~ld~~~~~L~~A~ 426 (482)
T KOG4322|consen 359 LALEHLALGSPKAALPLLHTAVHLILVQGGLDDRARAIFVFANCTLAFALSCANESLDGFPRYLDLAQ 426 (482)
T ss_pred HHHHHHHcCChHHHHHHHHhhhhHHHhccchhhcceeEEEEEeeeecchhhhhhhhHHhhHHHHHHHH
Confidence 77777777777777777777776665555444444444333333332 334555555555554
No 291
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=93.26 E-value=6.1 Score=35.69 Aligned_cols=154 Identities=12% Similarity=0.106 Sum_probs=110.0
Q ss_pred HcCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHH
Q 026767 21 ELHNWREVADFYRKASELYNECGRSQPASDALAKAARALE-DAVPEDAIQLYTDACIMLEEDDKEQMAFDLYRAATNVYI 99 (233)
Q Consensus 21 ~~g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~~~~~~~~l~~lg~~~~ 99 (233)
...|.+.+.+.|+.++++.-. ....-|.++.-.|..-. +-+...|.+.+-.|+-..+.. .++...-.+-.
T Consensus 378 e~ed~ertr~vyq~~l~lIPH--kkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~-------KlFk~YIelEl 448 (677)
T KOG1915|consen 378 EAEDVERTRQVYQACLDLIPH--KKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKD-------KLFKGYIELEL 448 (677)
T ss_pred HhhhHHHHHHHHHHHHhhcCc--ccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCch-------hHHHHHHHHHH
Confidence 467888899999999997532 22345666665566555 678888988888888766642 46777778888
Q ss_pred HhccHHHHHHHHHHHHHHHhHccCcchHHHhHHHHHHHHHhhCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHH-Hhc
Q 026767 100 KLEKYADAATFLLRWGLAADKCNATNSQCKAYLSAIIVYLYANDFKQAEKCYNDCSQVDAFLRSDQNRCATKLISA-YTE 178 (233)
Q Consensus 100 ~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~gd~~~A~~~~~~al~~~~~~~~~e~~~l~~L~~a-~~~ 178 (233)
++++++....+|++-++. .+....++...+..-..+||.++|+..|+-|++-+..... | -+...-++- .+.
T Consensus 449 qL~efDRcRkLYEkfle~------~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmp-e-llwkaYIdFEi~~ 520 (677)
T KOG1915|consen 449 QLREFDRCRKLYEKFLEF------SPENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMP-E-LLWKAYIDFEIEE 520 (677)
T ss_pred HHhhHHHHHHHHHHHHhc------ChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccH-H-HHHHHhhhhhhhc
Confidence 899999999999998864 4455667788889999999999999999999876653221 1 112222221 156
Q ss_pred CCHHHHHHHHhhc
Q 026767 179 GDVEEIKRVAQSS 191 (233)
Q Consensus 179 gd~~~a~~~~~~~ 191 (233)
|.++.++...++.
T Consensus 521 ~E~ekaR~LYerl 533 (677)
T KOG1915|consen 521 GEFEKARALYERL 533 (677)
T ss_pred chHHHHHHHHHHH
Confidence 8888888777776
No 292
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=93.10 E-value=5.2 Score=34.41 Aligned_cols=170 Identities=14% Similarity=0.159 Sum_probs=109.0
Q ss_pred HHHHcCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCChHH-HHHHHHHHH
Q 026767 18 LAKELHNWREVADFYRKASELYNECGRSQPASDALAKAARALE-DAVPEDAIQLYTDACIMLEEDDKEQM-AFDLYRAAT 95 (233)
Q Consensus 18 ~~~~~g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~~~~-~~~~l~~lg 95 (233)
+..+.+|.++|+++.++-.+-......+.....+...+|.++. .||..++.+.....-.+....+.-.. .-..++.++
T Consensus 84 ~~~~~~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~~ld~~~~v~~~Vh~~fY~ls 163 (380)
T KOG2908|consen 84 VSEQISDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKSMLDSLDGVTSNVHSSFYSLS 163 (380)
T ss_pred HHHHhccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcccCCChhhhhhHHHHH
Confidence 4456779999999999999999999999889999999999988 79999999988888877776653222 333455555
Q ss_pred HHHH-HhccHHHHHHHHHHHHHHHhHccCcchHHHhH-HHHHHHHHhhCCHHHHHHHHHHhhcCCCCC--CchHHHHHHH
Q 026767 96 NVYI-KLEKYADAATFLLRWGLAADKCNATNSQCKAY-LSAIIVYLYANDFKQAEKCYNDCSQVDAFL--RSDQNRCATK 171 (233)
Q Consensus 96 ~~~~-~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~-~~lg~~~~~~gd~~~A~~~~~~al~~~~~~--~~~e~~~l~~ 171 (233)
.-|. ..|++.....+.-+-+.+..-...+..+-..+ +.++..-+ +|+ -.-.|-+.+..|.+. ..-+.+.|..
T Consensus 164 sqYyk~~~d~a~yYr~~L~YL~~~d~~~l~~se~~~lA~~L~~aAL-LGe---~iyNfGELL~HPilesL~gT~~eWL~d 239 (380)
T KOG2908|consen 164 SQYYKKIGDFASYYRHALLYLGCSDIDDLSESEKQDLAFDLSLAAL-LGE---NIYNFGELLAHPILESLKGTNREWLKD 239 (380)
T ss_pred HHHHHHHHhHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHH-hcc---ccccHHHHHhhHHHHHhcCCcHHHHHH
Confidence 5444 56777765555444443332111222221111 33333322 232 112333444444331 1244578889
Q ss_pred HHHHHhcCCHHHHHHHHhhc
Q 026767 172 LISAYTEGDVEEIKRVAQSS 191 (233)
Q Consensus 172 L~~a~~~gd~~~a~~~~~~~ 191 (233)
+..|+..||...+.+.....
T Consensus 240 ll~Afn~Gdl~~f~~l~~~~ 259 (380)
T KOG2908|consen 240 LLIAFNSGDLKRFESLKGVW 259 (380)
T ss_pred HHHHhccCCHHHHHHHHHHh
Confidence 99999999999999887765
No 293
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=92.92 E-value=4.9 Score=33.64 Aligned_cols=127 Identities=15% Similarity=0.132 Sum_probs=77.4
Q ss_pred HHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHH-hccHHHHHHHHHHHHHHHhHccCcchHH
Q 026767 51 ALAKAARALE-DAVPEDAIQLYTDACIMLEEDDKEQMAFDLYRAATNVYIK-LEKYADAATFLLRWGLAADKCNATNSQC 128 (233)
Q Consensus 51 ~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~~~~~~~~l~~lg~~~~~-~g~~~~A~~~~~~al~~~~~~~~~~~~a 128 (233)
+|........ .+..+.|...|.+|+ ..+.... .++...|.+-.. .++...|...|++++..+....+
T Consensus 3 v~i~~m~~~~r~~g~~~aR~vF~~a~----~~~~~~~--~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~----- 71 (280)
T PF05843_consen 3 VWIQYMRFMRRTEGIEAARKVFKRAR----KDKRCTY--HVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPD----- 71 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH----CCCCS-T--HHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HH-----
T ss_pred HHHHHHHHHHHhCChHHHHHHHHHHH----cCCCCCH--HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHH-----
Confidence 3444444444 355888999999996 2333222 467788888555 67777799999999987644322
Q ss_pred HhHHHHHHHHHhhCCHHHHHHHHHHhhcCCCCCCch-HHHHHHHHHHHH-hcCCHHHHHHHHhhc
Q 026767 129 KAYLSAIIVYLYANDFKQAEKCYNDCSQVDAFLRSD-QNRCATKLISAY-TEGDVEEIKRVAQSS 191 (233)
Q Consensus 129 ~~~~~lg~~~~~~gd~~~A~~~~~~al~~~~~~~~~-e~~~l~~L~~a~-~~gd~~~a~~~~~~~ 191 (233)
.+..-...+...||...|+..|++++.... ... -..+....++-= .-||.+......+++
T Consensus 72 -~~~~Y~~~l~~~~d~~~aR~lfer~i~~l~--~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~ 133 (280)
T PF05843_consen 72 -FWLEYLDFLIKLNDINNARALFERAISSLP--KEKQSKKIWKKFIEFESKYGDLESVRKVEKRA 133 (280)
T ss_dssp -HHHHHHHHHHHTT-HHHHHHHHHHHCCTSS--CHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHH
T ss_pred -HHHHHHHHHHHhCcHHHHHHHHHHHHHhcC--chhHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 233334555678999999999999984311 111 122444444422 468887777776666
No 294
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=92.79 E-value=0.18 Score=25.90 Aligned_cols=23 Identities=13% Similarity=0.043 Sum_probs=17.1
Q ss_pred HHHHHHHHHHHhccHHHHHHHHH
Q 026767 90 LYRAATNVYIKLEKYADAATFLL 112 (233)
Q Consensus 90 ~l~~lg~~~~~~g~~~~A~~~~~ 112 (233)
+...+|.++..+|++++|...++
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHh
Confidence 45677778888888888877665
No 295
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=92.68 E-value=6.8 Score=34.62 Aligned_cols=147 Identities=9% Similarity=-0.006 Sum_probs=102.9
Q ss_pred HHHHHHHHHH--HHHcCCHHHHHHHHHHHHHHHHHcCCc----hHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhc
Q 026767 9 AKHMESAAAL--AKELHNWREVADFYRKASELYNECGRS----QPASDALAKAARALE-DAVPEDAIQLYTDACIMLEED 81 (233)
Q Consensus 9 a~~~~~~g~~--~~~~g~~~eA~~~~~~A~~l~~~~g~~----~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~ 81 (233)
..+|..+-.. .+.++++.+|..+-+.-+.-. ..++. .-+|.+|.-+..+|+ .|+...-...+..-+....-.
T Consensus 124 i~aY~~lLv~Lfl~d~K~~kea~~~~~~~l~~i-~~~nrRtlD~i~ak~~fy~~l~~E~~~~l~~~rs~l~~~lrtAtLr 202 (493)
T KOG2581|consen 124 IEAYLYLLVLLFLIDQKEYKEADKISDALLASI-SIQNRRTLDLIAAKLYFYLYLSYELEGRLADIRSFLHALLRTATLR 202 (493)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH-HhcchhhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhhc
Confidence 3444444333 234678888888776655542 23332 236778888888999 688776666666666665555
Q ss_pred CChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHccCcchHHHhHHHHHHHHHhhCCHHHHHHHHHHhh-cCC
Q 026767 82 DKEQMAFDLYRAATNVYIKLEKYADAATFLLRWGLAADKCNATNSQCKAYLSAIIVYLYANDFKQAEKCYNDCS-QVD 158 (233)
Q Consensus 82 g~~~~~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~gd~~~A~~~~~~al-~~~ 158 (233)
.+..+.+...+-+-+.|+..+.|++|-..-.++.- -+.......++-++-+|.+..-++||..|.++|-+|+ ..|
T Consensus 203 hd~e~qavLiN~LLr~yL~n~lydqa~~lvsK~~~--pe~~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rkap 278 (493)
T KOG2581|consen 203 HDEEGQAVLINLLLRNYLHNKLYDQADKLVSKSVY--PEAASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRKAP 278 (493)
T ss_pred CcchhHHHHHHHHHHHHhhhHHHHHHHHHhhcccC--ccccccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhCc
Confidence 56666677888889999999999999887766541 1222233667778999999999999999999999998 344
No 296
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=92.62 E-value=0.96 Score=27.83 Aligned_cols=28 Identities=14% Similarity=-0.084 Sum_probs=18.7
Q ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHH
Q 026767 90 LYRAATNVYIKLEKYADAATFLLRWGLA 117 (233)
Q Consensus 90 ~l~~lg~~~~~~g~~~~A~~~~~~al~~ 117 (233)
|+..++..+.++|+|.+|..+.+..+.+
T Consensus 3 ~lY~lAig~ykl~~Y~~A~~~~~~lL~~ 30 (53)
T PF14853_consen 3 CLYYLAIGHYKLGEYEKARRYCDALLEI 30 (53)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHHhh
Confidence 5666677777777777777777776654
No 297
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=92.42 E-value=6.4 Score=33.75 Aligned_cols=127 Identities=10% Similarity=0.016 Sum_probs=89.8
Q ss_pred HHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccH
Q 026767 26 REVADFYRKASELYNECGRSQPASDALAKAARALE-DAVPEDAIQLYTDACIMLEEDDKEQMAFDLYRAATNVYIKLEKY 104 (233)
Q Consensus 26 ~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~~~~~~~~l~~lg~~~~~~g~~ 104 (233)
++=+.-++++++=..++---.....++.+.|..|- -||-+.|.+++.+..+-....|......-+...+|.+|....=.
T Consensus 81 eeki~eld~~iedaeenlGE~ev~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~~iRlglfy~D~~lV 160 (393)
T KOG0687|consen 81 EEKIKELDEKIEDAEENLGESEVREAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFYKIRLGLFYLDHDLV 160 (393)
T ss_pred HHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHhhccHHHH
Confidence 34455556666555555334567888999999999 59999999999999999999998888778888999988755444
Q ss_pred HHHHHHHHHHHHHHhHccC--cchHHHhHHHHHHHHHhhCCHHHHHHHHHHhhcC
Q 026767 105 ADAATFLLRWGLAADKCNA--TNSQCKAYLSAIIVYLYANDFKQAEKCYNDCSQV 157 (233)
Q Consensus 105 ~~A~~~~~~al~~~~~~~~--~~~~a~~~~~lg~~~~~~gd~~~A~~~~~~al~~ 157 (233)
.+- .+++-.+.++-|+ +++.-++ --|+-+...-++.+|-..|-.++..
T Consensus 161 ~~~---iekak~liE~GgDWeRrNRlKv--Y~Gly~msvR~Fk~Aa~Lfld~vsT 210 (393)
T KOG0687|consen 161 TES---IEKAKSLIEEGGDWERRNRLKV--YQGLYCMSVRNFKEAADLFLDSVST 210 (393)
T ss_pred HHH---HHHHHHHHHhCCChhhhhhHHH--HHHHHHHHHHhHHHHHHHHHHHccc
Confidence 443 3455555555543 2333344 3455556667999999999988643
No 298
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=92.33 E-value=0.24 Score=29.25 Aligned_cols=23 Identities=13% Similarity=0.219 Sum_probs=12.3
Q ss_pred HHHHHHHhhCCHHHHHHHHHHhh
Q 026767 133 SAIIVYLYANDFKQAEKCYNDCS 155 (233)
Q Consensus 133 ~lg~~~~~~gd~~~A~~~~~~al 155 (233)
.++.+|..+||++.|++.+++.+
T Consensus 4 dLA~ayie~Gd~e~Ar~lL~evl 26 (44)
T TIGR03504 4 DLARAYIEMGDLEGARELLEEVI 26 (44)
T ss_pred HHHHHHHHcCChHHHHHHHHHHH
Confidence 44555555555555555555554
No 299
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=92.15 E-value=0.55 Score=37.28 Aligned_cols=57 Identities=25% Similarity=0.342 Sum_probs=33.4
Q ss_pred HHHHHHHHHHhhhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHH
Q 026767 49 SDALAKAARALEDAVPEDAIQLYTDACIMLEEDDKEQMAFDLYRAATNVYIKLEKYADA 107 (233)
Q Consensus 49 a~~l~~lg~~~~~g~~~~A~~~~~~Al~~~~~~g~~~~~~~~l~~lg~~~~~~g~~~~A 107 (233)
+.....+|..|...++++++..|.+++++.....+... .++..|+.++.++|+++.|
T Consensus 141 ~elq~aLAtyY~krD~~Kt~~ll~~~L~l~~~~~~~n~--eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 141 AELQYALATYYTKRDPEKTIQLLLRALELSNPDDNFNP--EILKSLASIYQKLKNYEQA 197 (203)
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCCCCCH--HHHHHHHHHHHHhcchhhh
Confidence 44455555555566666666666666666665543322 4566666666666666655
No 300
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=91.97 E-value=4.4 Score=31.71 Aligned_cols=67 Identities=24% Similarity=0.213 Sum_probs=39.4
Q ss_pred HHHHHHHHHHhh-h---CC-------HHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhc----cHHHHHHHHHH
Q 026767 49 SDALAKAARALE-D---AV-------PEDAIQLYTDACIMLEEDDKEQMAFDLYRAATNVYIKLE----KYADAATFLLR 113 (233)
Q Consensus 49 a~~l~~lg~~~~-~---g~-------~~~A~~~~~~Al~~~~~~g~~~~~~~~l~~lg~~~~~~g----~~~~A~~~~~~ 113 (233)
+..|++-|.++. . .. +++|+.-|++|+.+-+.. ..++.++|.+|..++ +..+|-++|++
T Consensus 25 adnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~------hdAlw~lGnA~ts~A~l~~d~~~A~~~F~k 98 (186)
T PF06552_consen 25 ADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNK------HDALWCLGNAYTSLAFLTPDTAEAEEYFEK 98 (186)
T ss_dssp HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-------HHHHHHHHHHHHHHHHH---HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCch------HHHHHHHHHHHHHHHhhcCChHHHHHHHHH
Confidence 667777777665 3 33 344555555555554432 257788888887665 44566677777
Q ss_pred HHHHHhHc
Q 026767 114 WGLAADKC 121 (233)
Q Consensus 114 al~~~~~~ 121 (233)
|...+.+.
T Consensus 99 A~~~FqkA 106 (186)
T PF06552_consen 99 ATEYFQKA 106 (186)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 76666543
No 301
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=91.86 E-value=2.5 Score=39.47 Aligned_cols=24 Identities=21% Similarity=0.250 Sum_probs=15.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHH
Q 026767 11 HMESAAALAKELHNWREVADFYRK 34 (233)
Q Consensus 11 ~~~~~g~~~~~~g~~~eA~~~~~~ 34 (233)
-+..++.++++.|.-..|+++|..
T Consensus 647 KF~EAAklFk~~G~enRAlEmyTD 670 (1081)
T KOG1538|consen 647 KFHEAAKLFKRSGHENRALEMYTD 670 (1081)
T ss_pred hHHHHHHHHHHcCchhhHHHHHHH
Confidence 355666666666666666666544
No 302
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=91.78 E-value=0.2 Score=45.78 Aligned_cols=94 Identities=16% Similarity=0.080 Sum_probs=75.3
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCChHHHHHHH
Q 026767 13 ESAAALAKELHNWREVADFYRKASELYNECGRSQPASDALAKAARALE-DAVPEDAIQLYTDACIMLEEDDKEQMAFDLY 91 (233)
Q Consensus 13 ~~~g~~~~~~g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~~~~~~~~l 91 (233)
+.+|...+-.|+...|+.|...|+.+- +...-..+.+++.++. -|-.-.|-.++.+++.+.-... ..+
T Consensus 611 n~aglywr~~gn~~~a~~cl~~a~~~~-----p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sep------l~~ 679 (886)
T KOG4507|consen 611 NEAGLYWRAVGNSTFAIACLQRALNLA-----PLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEP------LTF 679 (886)
T ss_pred ecccceeeecCCcHHHHHHHHHHhccC-----hhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCc------hHH
Confidence 334444556899999999999998765 4455556888998888 6888889999999999883222 367
Q ss_pred HHHHHHHHHhccHHHHHHHHHHHHHH
Q 026767 92 RAATNVYIKLEKYADAATFLLRWGLA 117 (233)
Q Consensus 92 ~~lg~~~~~~g~~~~A~~~~~~al~~ 117 (233)
..+|..++.+.+.++|++.|++|+.+
T Consensus 680 ~~~g~~~l~l~~i~~a~~~~~~a~~~ 705 (886)
T KOG4507|consen 680 LSLGNAYLALKNISGALEAFRQALKL 705 (886)
T ss_pred HhcchhHHHHhhhHHHHHHHHHHHhc
Confidence 78999999999999999999999975
No 303
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=91.45 E-value=8.3 Score=36.20 Aligned_cols=73 Identities=12% Similarity=0.167 Sum_probs=49.7
Q ss_pred HHHHHHHHHHcCCchHHHHHHHHHHHH-----hh-hCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHH
Q 026767 32 YRKASELYNECGRSQPASDALAKAARA-----LE-DAVPEDAIQLYTDACIMLEEDDKEQMAFDLYRAATNVYIKLEKYA 105 (233)
Q Consensus 32 ~~~A~~l~~~~g~~~~~a~~l~~lg~~-----~~-~g~~~~A~~~~~~Al~~~~~~g~~~~~~~~l~~lg~~~~~~g~~~ 105 (233)
|.+|..+|.+.|....+-..+..+-+. +. .|..++--...++=.++.+....++-+++ +++..|+.+
T Consensus 648 F~EAAklFk~~G~enRAlEmyTDlRMFD~aQE~~~~g~~~eKKmL~RKRA~WAr~~kePkaAAE-------mLiSaGe~~ 720 (1081)
T KOG1538|consen 648 FHEAAKLFKRSGHENRALEMYTDLRMFDYAQEFLGSGDPKEKKMLIRKRADWARNIKEPKAAAE-------MLISAGEHV 720 (1081)
T ss_pred HHHHHHHHHHcCchhhHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHhhhcCCcHHHHH-------Hhhcccchh
Confidence 677788888888888777777766443 33 47777777777777788887777766554 344455555
Q ss_pred HHHHHH
Q 026767 106 DAATFL 111 (233)
Q Consensus 106 ~A~~~~ 111 (233)
+|+...
T Consensus 721 KAi~i~ 726 (1081)
T KOG1538|consen 721 KAIEIC 726 (1081)
T ss_pred hhhhhh
Confidence 665543
No 304
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=91.34 E-value=0.9 Score=44.42 Aligned_cols=92 Identities=8% Similarity=0.014 Sum_probs=63.6
Q ss_pred hCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHccCcchHHHhHHHHHHHHHh
Q 026767 61 DAVPEDAIQLYTDACIMLEEDDKEQMAFDLYRAATNVYIKLEKYADAATFLLRWGLAADKCNATNSQCKAYLSAIIVYLY 140 (233)
Q Consensus 61 ~g~~~~A~~~~~~Al~~~~~~g~~~~~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~ 140 (233)
...|++|+..|++..+-|+... ...+++..+|..+++.-.-..--+.|.+|+.-+.......+..--|+.-++||.+
T Consensus 488 ~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 564 (932)
T PRK13184 488 EKLYDQALIFYRRIRESFPGRK---EGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLHGGVGAPLEYLGKALVYQR 564 (932)
T ss_pred hHHHHHHHHHHHHHhhcCCCcc---cchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhcCCCCCchHHHhHHHHHHH
Confidence 3456666666666655554322 1235677888877654332222267777887777777777777778888999999
Q ss_pred hCCHHHHHHHHHHhh
Q 026767 141 ANDFKQAEKCYNDCS 155 (233)
Q Consensus 141 ~gd~~~A~~~~~~al 155 (233)
+|+|++=.++|.-++
T Consensus 565 ~~~~~~~~~~~~~~~ 579 (932)
T PRK13184 565 LGEYNEEIKSLLLAL 579 (932)
T ss_pred hhhHHHHHHHHHHHH
Confidence 999999999998886
No 305
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=91.32 E-value=4.6 Score=32.14 Aligned_cols=119 Identities=18% Similarity=0.150 Sum_probs=72.0
Q ss_pred HHHHHHHHHHHHHHHcC----------CchHHHHHHHHHHHHhh--hCCHHHHHHHH-------HHHHHHHHhcC--ChH
Q 026767 27 EVADFYRKASELYNECG----------RSQPASDALAKAARALE--DAVPEDAIQLY-------TDACIMLEEDD--KEQ 85 (233)
Q Consensus 27 eA~~~~~~A~~l~~~~g----------~~~~~a~~l~~lg~~~~--~g~~~~A~~~~-------~~Al~~~~~~g--~~~ 85 (233)
.+++-|.+++++.-... +......+..++..+.. .+..+.-+-+| +.|...|-+.. ...
T Consensus 59 ~~le~Y~kCielAa~Iq~i~~~e~k~~R~~a~~~s~~~l~~L~~~tk~S~dP~llYy~Wsr~~d~~A~~~fL~~E~~~~l 138 (203)
T PF11207_consen 59 EALEKYSKCIELAAQIQHIKQKERKTDRFRALLHSYQELERLQEETKNSQDPYLLYYHWSRFGDQEALRRFLQLEGTPEL 138 (203)
T ss_pred HHHHHHHHHHHHHhcCeeechHhHHHHHHHHHHHHHHHHHHHHHHHccCCCccHHHHHhhccCcHHHHHHHHHHcCCCCC
Confidence 46677888888764332 22333344445554443 12222222222 23444444322 111
Q ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHccCcchHHHhHHHHHHHHHhhCCHHHHH
Q 026767 86 MAFDLYRAATNVYIKLEKYADAATFLLRWGLAADKCNATNSQCKAYLSAIIVYLYANDFKQAE 148 (233)
Q Consensus 86 ~~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~gd~~~A~ 148 (233)
.-+.....+|..|. ..+.++|+.++-+++++..... ......+.+|+.++..+|+++.|-
T Consensus 139 ~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~--~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 139 ETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDD--NFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred CCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCC--CCCHHHHHHHHHHHHHhcchhhhh
Confidence 22457778888887 6789999999999999876532 334567899999999999998773
No 306
>KOG4014 consensus Uncharacterized conserved protein (contains TPR repeat) [Function unknown]
Probab=91.11 E-value=5.7 Score=31.38 Aligned_cols=89 Identities=13% Similarity=0.036 Sum_probs=68.0
Q ss_pred HHcCCHHHHHH-HHHHHHHHHHHcCCchHHHHHHHHHHHHhhh------CCHHHHHHHHHHHHHHHHhcCChHHHHHHHH
Q 026767 20 KELHNWREVAD-FYRKASELYNECGRSQPASDALAKAARALED------AVPEDAIQLYTDACIMLEEDDKEQMAFDLYR 92 (233)
Q Consensus 20 ~~~g~~~eA~~-~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~~------g~~~~A~~~~~~Al~~~~~~g~~~~~~~~l~ 92 (233)
..+|+|-|+|+ -|++|..+|..+=+-.+-+.+..+.|..+.. +++..|+++|..|.+.- . ..+-.
T Consensus 38 ~lLgdYlEgi~knF~~A~kv~K~nCden~y~kSCyKyG~y~~~GKgG~~~~l~~a~r~~~~aC~~n----~----~~aC~ 109 (248)
T KOG4014|consen 38 QLLGDYLEGIQKNFQAAVKVFKKNCDENSYPKSCYKYGMYMLAGKGGDDASLSKAIRPMKIACDAN----I----PQACR 109 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccccCCcHHHHHhhhhhhcccCCCccCHHHHHHHHHHHhccC----C----HHHHh
Confidence 35788888884 6999999999998888888888899887662 47899999999998722 1 13455
Q ss_pred HHHHHHHH-----hc--cHHHHHHHHHHHHH
Q 026767 93 AATNVYIK-----LE--KYADAATFLLRWGL 116 (233)
Q Consensus 93 ~lg~~~~~-----~g--~~~~A~~~~~~al~ 116 (233)
++|.++.. -+ +..+|.++++++-+
T Consensus 110 ~~gLl~~~g~~~r~~dpd~~Ka~~y~traCd 140 (248)
T KOG4014|consen 110 YLGLLHWNGEKDRKADPDSEKAERYMTRACD 140 (248)
T ss_pred hhhhhhccCcCCccCCCCcHHHHHHHHHhcc
Confidence 67777653 22 47899999998864
No 307
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=90.74 E-value=9.4 Score=32.34 Aligned_cols=174 Identities=6% Similarity=0.005 Sum_probs=110.9
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCChHH-HHHHHH
Q 026767 15 AAALAKELHNWREVADFYRKASELYNECGRSQPASDALAKAARALE-DAVPEDAIQLYTDACIMLEEDDKEQM-AFDLYR 92 (233)
Q Consensus 15 ~g~~~~~~g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~~~~-~~~~l~ 92 (233)
+..++.+.|.|.+|+....--+.-+.+..|......++.--..+|. -.+..++...+..|-......--+.+ .++.=.
T Consensus 131 li~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li~vhllESKvyh~irnv~KskaSLTaArt~Ans~YCPpqlqa~lDL 210 (421)
T COG5159 131 LIYLLYKTGKYSDALALINPLLHELKKYDDKINLITVHLLESKVYHEIRNVSKSKASLTAARTLANSAYCPPQLQAQLDL 210 (421)
T ss_pred HHHHHHhcccHHHHHHHHHHHHHHHHhhcCccceeehhhhhHHHHHHHHhhhhhhhHHHHHHHHhhccCCCHHHHHHHHH
Confidence 3345566888999999888888888888887777777776777777 57777777777777666665543332 333333
Q ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHhHccCcchHHHhH--HHHHHHHHhhCCHHHHHHHHHHhhcCCCCCCchHHHHHH
Q 026767 93 AATNVYIKLEKYADAATFLLRWGLAADKCNATNSQCKAY--LSAIIVYLYANDFKQAEKCYNDCSQVDAFLRSDQNRCAT 170 (233)
Q Consensus 93 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~--~~lg~~~~~~gd~~~A~~~~~~al~~~~~~~~~e~~~l~ 170 (233)
.-|.+++.-.+|..|..||-++++-+............+ .-+..+.+ ...++-...+..=..+. .-..+--+++.
T Consensus 211 ~sGIlhcdd~dyktA~SYF~Ea~Egft~l~~d~kAc~sLkYmlLSkIMl--N~~~evk~vl~~K~t~~-~y~~r~I~am~ 287 (421)
T COG5159 211 LSGILHCDDRDYKTASSYFIEALEGFTLLKMDVKACVSLKYMLLSKIML--NRREEVKAVLRNKNTLK-HYDDRMIRAML 287 (421)
T ss_pred hccceeeccccchhHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHH--hhHHHHHHHHccchhHh-hhhhhhHHHHH
Confidence 346677888899999999999998877655544333333 22333332 22222221111100011 01234456788
Q ss_pred HHHHHHhcCCHHHHHHHHhhc
Q 026767 171 KLISAYTEGDVEEIKRVAQSS 191 (233)
Q Consensus 171 ~L~~a~~~gd~~~a~~~~~~~ 191 (233)
...+++.+.+...+..++++|
T Consensus 288 avaea~~NRsL~df~~aL~qY 308 (421)
T COG5159 288 AVAEAFGNRSLKDFSDALAQY 308 (421)
T ss_pred HHHHHhCCCcHhhHHHHHHHh
Confidence 888888888888888888887
No 308
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=90.73 E-value=3.5 Score=27.40 Aligned_cols=32 Identities=19% Similarity=0.226 Sum_probs=21.5
Q ss_pred HHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHh
Q 026767 49 SDALAKAARALE-DAVPEDAIQLYTDACIMLEE 80 (233)
Q Consensus 49 a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~ 80 (233)
|..+...|.-.. .|+|++|+.+|..|++++..
T Consensus 6 Ai~~a~~Ave~D~~g~y~eA~~~Y~~aie~l~~ 38 (76)
T cd02681 6 AVQFARLAVQRDQEGRYSEAVFYYKEAAQLLIY 38 (76)
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Confidence 344444555555 58888888888888887765
No 309
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=90.67 E-value=9.5 Score=32.32 Aligned_cols=117 Identities=9% Similarity=-0.045 Sum_probs=80.9
Q ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCC
Q 026767 5 PWDAAKHMESAAALAKELHNWREVADFYRKASELYNECGRSQPASDALAKAARALE-DAVPEDAIQLYTDACIMLEEDDK 83 (233)
Q Consensus 5 ~~~~a~~~~~~g~~~~~~g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~ 83 (233)
....++++.|+|..|.+.++.+.+.++..+.+.-....|-.-..-.+-.++|.+|. +.-.. +..+.+=.+++.-|+
T Consensus 111 E~e~~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d~~vV~---e~lE~~~~~iEkGgD 187 (412)
T COG5187 111 ETEGSEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIYGDRKVVE---ESLEVADDIIEKGGD 187 (412)
T ss_pred chHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHhhccHHHHH---HHHHHHHHHHHhCCC
Confidence 34567888999999999999999999888888877777766666666667777776 32223 334455566666665
Q ss_pred hHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHccCc
Q 026767 84 EQMAFDLYRAATNVYIKLEKYADAATFLLRWGLAADKCNAT 124 (233)
Q Consensus 84 ~~~~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 124 (233)
+.-....-.-.|.......++.+|..++...+..+......
T Consensus 188 WeRrNRyK~Y~Gi~~m~~RnFkeAa~Ll~d~l~tF~S~El~ 228 (412)
T COG5187 188 WERRNRYKVYKGIFKMMRRNFKEAAILLSDILPTFESSELI 228 (412)
T ss_pred HHhhhhHHHHHHHHHHHHHhhHHHHHHHHHHhccccccccc
Confidence 54444333445666777788888888888887766655433
No 310
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=90.64 E-value=0.78 Score=37.88 Aligned_cols=42 Identities=21% Similarity=0.286 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh-hCCHHHHHHHHHHHH
Q 026767 28 VADFYRKASELYNECGRSQPASDALAKAARALE-DAVPEDAIQLYTDAC 75 (233)
Q Consensus 28 A~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al 75 (233)
|..||.+|..+.- ..+..++.+|.++. .|+.-.|+=+|-||+
T Consensus 1 A~~~Y~~A~~l~P------~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl 43 (278)
T PF10373_consen 1 AERYYRKAIRLLP------SNGNPYNQLAVLASYQGDDLDAVYYYIRSL 43 (278)
T ss_dssp HHHHHHHHHHH-T------TBSHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCC------CCCCcccchhhhhccccchHHHHHHHHHHH
Confidence 3445555555531 23455555555555 455555555555554
No 311
>PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex []. Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ].
Probab=90.42 E-value=11 Score=33.57 Aligned_cols=105 Identities=10% Similarity=-0.091 Sum_probs=80.4
Q ss_pred HHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccH-------HHHHHHHHHHHHHHhHc-
Q 026767 51 ALAKAARALE-DAVPEDAIQLYTDACIMLEEDDKEQMAFDLYRAATNVYIKLEKY-------ADAATFLLRWGLAADKC- 121 (233)
Q Consensus 51 ~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~~~~~~~~l~~lg~~~~~~g~~-------~~A~~~~~~al~~~~~~- 121 (233)
....+|.... .+||+-|...|+-...-|.........+.++.-+|..+...+.. +....+++.|...+...
T Consensus 210 q~R~LAD~aFml~Dy~~A~s~Y~~~k~Df~~Dkaw~~~A~~~Em~alsl~~~~~~~~~k~~~~~~~~~le~A~~~Y~~~~ 289 (414)
T PF12739_consen 210 QMRRLADLAFMLRDYELAYSTYRLLKKDFKNDKAWKYLAGAQEMAALSLLMQGQSISAKIRKDEIEPYLENAYYTYLKSA 289 (414)
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHHHHhhchhHHHHHhHHHHHHHHHHhcCCCCccccccccHHHHHHHHHHHHHhhh
Confidence 4567888888 79999999999999999998887777777888888877776643 47778888888888773
Q ss_pred ----cCcchHHHhHHHHHHHHHhhCCHHHHHHHHHHhh
Q 026767 122 ----NATNSQCKAYLSAIIVYLYANDFKQAEKCYNDCS 155 (233)
Q Consensus 122 ----~~~~~~a~~~~~lg~~~~~~gd~~~A~~~~~~al 155 (233)
.......++.+..+.++...|.+.+|...+-+..
T Consensus 290 ~~~~~~~~~a~R~~ll~~ell~~~~~~~~a~~~~~~~~ 327 (414)
T PF12739_consen 290 LPRCSLPYYALRCALLLAELLKSRGGYWEAADQLIRWT 327 (414)
T ss_pred ccccccccchHHHHHHHHHHHHhcCccHHHHHHHHHHH
Confidence 2334556777788888888888877766555543
No 312
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.34 E-value=3.9 Score=39.14 Aligned_cols=50 Identities=18% Similarity=0.182 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHcCC-chHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHH
Q 026767 30 DFYRKASELYNECGR-SQPASDALAKAARALE-DAVPEDAIQLYTDACIMLE 79 (233)
Q Consensus 30 ~~~~~A~~l~~~~g~-~~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~ 79 (233)
..|.-|+.+....+. ....+.+..+.|..+. +|++++|..+|-+++...+
T Consensus 348 ~ly~~Ai~LAk~~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~le 399 (933)
T KOG2114|consen 348 NLYKVAINLAKSQHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGFLE 399 (933)
T ss_pred hhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcccCC
Confidence 357777788776655 5567778888888877 8999999999998885443
No 313
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=90.34 E-value=9.3 Score=34.36 Aligned_cols=40 Identities=10% Similarity=0.013 Sum_probs=26.0
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Q 026767 72 TDACIMLEEDDKEQMAFDLYRAATNVYIKLEKYADAATFLLRWG 115 (233)
Q Consensus 72 ~~Al~~~~~~g~~~~~~~~l~~lg~~~~~~g~~~~A~~~~~~al 115 (233)
+.|+++..+.+++ ..+..+|...+.+|+++-|.++|+++-
T Consensus 335 ~~A~~~a~~~~~~----~~W~~Lg~~AL~~g~~~lAe~c~~k~~ 374 (443)
T PF04053_consen 335 DIALEIAKELDDP----EKWKQLGDEALRQGNIELAEECYQKAK 374 (443)
T ss_dssp HHHHHHCCCCSTH----HHHHHHHHHHHHTTBHHHHHHHHHHCT
T ss_pred HHHHHHHHhcCcH----HHHHHHHHHHHHcCCHHHHHHHHHhhc
Confidence 3444455554433 367777777778888887777777654
No 314
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=90.32 E-value=4.8 Score=38.04 Aligned_cols=107 Identities=13% Similarity=0.140 Sum_probs=56.3
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH---------HHcCCchHHHH-------HHHHHHHHhh-hCCHHHHHH
Q 026767 7 DAAKHMESAAALAKELHNWREVADFYRKASELY---------NECGRSQPASD-------ALAKAARALE-DAVPEDAIQ 69 (233)
Q Consensus 7 ~~a~~~~~~g~~~~~~g~~~eA~~~~~~A~~l~---------~~~g~~~~~a~-------~l~~lg~~~~-~g~~~~A~~ 69 (233)
+.-.+++++|..+.++..+.+|.+||.++-..- ..-|+....+. .+-.+|.++. .|.-++|.+
T Consensus 794 ~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~e~~~ecly~le~f~~LE~la~~Lpe~s~llp~~a~mf~svGMC~qAV~ 873 (1189)
T KOG2041|consen 794 GKEDAFRNIGETFAEMMEWEEAAKYYSYCGDTENQIECLYRLELFGELEVLARTLPEDSELLPVMADMFTSVGMCDQAVE 873 (1189)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHhHHHHHHHHHhhhhHHHHHHhcCcccchHHHHHHHHHhhchHHHHHH
Confidence 345678888888888888888888887653321 11122222221 2334455666 466666666
Q ss_pred HHH-------------------HHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Q 026767 70 LYT-------------------DACIMLEEDDKEQMAFDLYRAATNVYIKLEKYADAATFLLRW 114 (233)
Q Consensus 70 ~~~-------------------~Al~~~~~~g~~~~~~~~l~~lg~~~~~~g~~~~A~~~~~~a 114 (233)
.|. +|+++.....-+. ....+-+.+.-++.-++.-+|++.++++
T Consensus 874 a~Lr~s~pkaAv~tCv~LnQW~~avelaq~~~l~q-v~tliak~aaqll~~~~~~eaIe~~Rka 936 (1189)
T KOG2041|consen 874 AYLRRSLPKAAVHTCVELNQWGEAVELAQRFQLPQ-VQTLIAKQAAQLLADANHMEAIEKDRKA 936 (1189)
T ss_pred HHHhccCcHHHHHHHHHHHHHHHHHHHHHhccchh-HHHHHHHHHHHHHhhcchHHHHHHhhhc
Confidence 553 2333333322111 1112233334445566777777777765
No 315
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=90.28 E-value=3.1 Score=27.64 Aligned_cols=35 Identities=17% Similarity=0.228 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 026767 7 DAAKHMESAAALAKELHNWREVADFYRKASELYNE 41 (233)
Q Consensus 7 ~~a~~~~~~g~~~~~~g~~~eA~~~~~~A~~l~~~ 41 (233)
..|..+..-|.-+-..|++++|+.+|.+|++++..
T Consensus 4 ~~Ai~~a~~Ave~D~~g~y~eA~~~Y~~aie~l~~ 38 (76)
T cd02681 4 RDAVQFARLAVQRDQEGRYSEAVFYYKEAAQLLIY 38 (76)
T ss_pred HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Confidence 34566777777788899999999999999999865
No 316
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.14 E-value=1.9 Score=37.10 Aligned_cols=93 Identities=15% Similarity=0.013 Sum_probs=71.6
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 026767 16 AALAKELHNWREVADFYRKASELYNECGRSQPASDALAKAARALE-DAVPEDAIQLYTDACIMLEEDDKEQMAFDLYRAA 94 (233)
Q Consensus 16 g~~~~~~g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~~~~~~~~l~~l 94 (233)
+..+.+.|-+++|....++|+++- .. -+++..-.+.+++ .|++.++.++..+.-...++.. ..+..-+-.-
T Consensus 182 aFgL~E~g~y~dAEk~A~ralqiN----~~--D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~--mlasHNyWH~ 253 (491)
T KOG2610|consen 182 AFGLEECGIYDDAEKQADRALQIN----RF--DCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSW--MLASHNYWHT 253 (491)
T ss_pred HhhHHHhccchhHHHHHHhhccCC----Cc--chHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhh--HHHhhhhHHH
Confidence 444557889999999888888763 23 4677777888999 7999999999998888887322 2333455667
Q ss_pred HHHHHHhccHHHHHHHHHHHHH
Q 026767 95 TNVYIKLEKYADAATFLLRWGL 116 (233)
Q Consensus 95 g~~~~~~g~~~~A~~~~~~al~ 116 (233)
+.+|++.+.|+.|++.|.+-+-
T Consensus 254 Al~~iE~aeye~aleIyD~ei~ 275 (491)
T KOG2610|consen 254 ALFHIEGAEYEKALEIYDREIW 275 (491)
T ss_pred HHhhhcccchhHHHHHHHHHHH
Confidence 8889999999999999998664
No 317
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=89.85 E-value=1.4 Score=27.07 Aligned_cols=43 Identities=12% Similarity=0.203 Sum_probs=31.3
Q ss_pred hHHHHHHHHHhhCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHH
Q 026767 130 AYLSAIIVYLYANDFKQAEKCYNDCSQVDAFLRSDQNRCATKLIS 174 (233)
Q Consensus 130 ~~~~lg~~~~~~gd~~~A~~~~~~al~~~~~~~~~e~~~l~~L~~ 174 (233)
+++.++..+.+.|+|.+|+++.+..+.+.- ...++..|..+++
T Consensus 3 ~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP--~N~Qa~~L~~~i~ 45 (53)
T PF14853_consen 3 CLYYLAIGHYKLGEYEKARRYCDALLEIEP--DNRQAQSLKELIE 45 (53)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHTT--S-HHHHHHHHHHH
T ss_pred hHHHHHHHHHHhhhHHHHHHHHHHHHhhCC--CcHHHHHHHHHHH
Confidence 467888999999999999999999985431 2356666666654
No 318
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=89.74 E-value=4.5 Score=27.10 Aligned_cols=74 Identities=14% Similarity=0.026 Sum_probs=56.6
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCCh
Q 026767 8 AAKHMESAAALAKELHNWREVADFYRKASELYNECGRSQPASDALAKAARALE-DAVPEDAIQLYTDACIMLEEDDKE 84 (233)
Q Consensus 8 ~a~~~~~~g~~~~~~g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~~ 84 (233)
.++-...-|.-+....+.++|+...++++.-... +.+.-.++.-+..+|. .|.|.+.+++--+=+++.++.+++
T Consensus 5 ~ak~~ie~GlkLY~~~~~~~Al~~W~~aL~k~~~---~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~~A~eled~ 79 (80)
T PF10579_consen 5 QAKQQIEKGLKLYHQNETQQALQKWRKALEKITD---REDRFRVLGYLIQAHMEWGKYREMLAFALQQLEIAEELEDP 79 (80)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHHHhhcCC---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC
Confidence 3444455555555688899999999999987654 4455666777778888 699999999999999998887764
No 319
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=89.68 E-value=1.7 Score=28.08 Aligned_cols=31 Identities=29% Similarity=0.312 Sum_probs=16.3
Q ss_pred HHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHh
Q 026767 50 DALAKAARALE-DAVPEDAIQLYTDACIMLEE 80 (233)
Q Consensus 50 ~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~ 80 (233)
..+.+.|.-.. .|++++|+.+|.+|++.+..
T Consensus 6 ~~~~~~Av~~D~~g~~~~A~~~Y~~ai~~l~~ 37 (69)
T PF04212_consen 6 IELIKKAVEADEAGNYEEALELYKEAIEYLMQ 37 (69)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence 33444444445 45556666666666555543
No 320
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=89.54 E-value=0.72 Score=27.21 Aligned_cols=25 Identities=16% Similarity=0.113 Sum_probs=22.2
Q ss_pred HHHHHHHHHhccHHHHHHHHHHHHH
Q 026767 92 RAATNVYIKLEKYADAATFLLRWGL 116 (233)
Q Consensus 92 ~~lg~~~~~~g~~~~A~~~~~~al~ 116 (233)
.+++..|+.+|+++.|.+.+++.+.
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHH
Confidence 4688999999999999999998884
No 321
>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins.
Probab=89.36 E-value=3.9 Score=29.94 Aligned_cols=31 Identities=19% Similarity=0.005 Sum_probs=19.3
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHcC
Q 026767 13 ESAAALAKELHNWREVADFYRKASELYNECG 43 (233)
Q Consensus 13 ~~~g~~~~~~g~~~eA~~~~~~A~~l~~~~g 43 (233)
..+|+.....+++-.++-+|++|+.+..+..
T Consensus 5 tllAd~a~~~~~~l~si~hYQqAls~se~~~ 35 (140)
T PF10952_consen 5 TLLADQAFKEADPLRSILHYQQALSLSEEID 35 (140)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHHHHHHhc
Confidence 3455555556666677777777776666553
No 322
>KOG4322 consensus Anaphase-promoting complex (APC), subunit 5 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=89.21 E-value=4.4 Score=35.90 Aligned_cols=148 Identities=9% Similarity=-0.129 Sum_probs=103.9
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCChH
Q 026767 7 DAAKHMESAAALAKELHNWREVADFYRKASELYNECGRSQPASDALAKAARALE-DAVPEDAIQLYTDACIMLEEDDKEQ 85 (233)
Q Consensus 7 ~~a~~~~~~g~~~~~~g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~~~ 85 (233)
-.+.++-.++.+++..+..-.+..+.-.+.....+.....-.+..--+++..+. .|.+++|+.....|+.+.--.|--.
T Consensus 311 m~~sVLL~~ae~~~~g~~a~l~lplaL~~~~~~sey~ldyl~a~~~L~LAl~~L~LG~pk~Al~lLh~a~h~Il~~GgL~ 390 (482)
T KOG4322|consen 311 MLHSVLLTIAEARESGDTACLNLPLALMFEFKRSEYSLDYLEANENLDLALEHLALGSPKAALPLLHTAVHLILVQGGLD 390 (482)
T ss_pred HHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHHHHhccchhhhhchHHHHHHHHHcCChHHHHHHHHhhhhHHHhccchh
Confidence 345556667777776666677777777777776666666667776677777777 7999999999999998877766221
Q ss_pred HHH-------HHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHccCcchHHHhHHHHHHHHHhhCCHH---HHHHHHHHhh
Q 026767 86 MAF-------DLYRAATNVYIKLEKYADAATFLLRWGLAADKCNATNSQCKAYLSAIIVYLYANDFK---QAEKCYNDCS 155 (233)
Q Consensus 86 ~~~-------~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~gd~~---~A~~~~~~al 155 (233)
..+ .|+..-+..+ ...+.+.+.++++++-..+.+.+-.-....+..-.+..|-..||.+ ++...|+++.
T Consensus 391 drara~fvfanC~lA~a~s~-~~e~ld~~~~~L~~A~~~f~kL~~he~ildv~yf~A~~yn~lGd~~eRn~~AslFrk~~ 469 (482)
T KOG4322|consen 391 DRARAIFVFANCTLAFALSC-ANESLDGFPRYLDLAQSIFYKLGCHEKILDVTYFSAYQYNHLGDSPERNLLASLFRKAW 469 (482)
T ss_pred hcceeEEEEEeeeecchhhh-hhhhHHhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHH
Confidence 111 2222222222 6778899999999999999888877667777788888888888764 3444556654
No 323
>PRK10941 hypothetical protein; Provisional
Probab=89.17 E-value=7.7 Score=32.43 Aligned_cols=91 Identities=10% Similarity=-0.083 Sum_probs=66.9
Q ss_pred HHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHccCcchHHHhHHHHHHHHHhhCCHHHHHHHHHHhh-
Q 026767 77 MLEEDDKEQMAFDLYRAATNVYIKLEKYADAATFLLRWGLAADKCNATNSQCKAYLSAIIVYLYANDFKQAEKCYNDCS- 155 (233)
Q Consensus 77 ~~~~~g~~~~~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~gd~~~A~~~~~~al- 155 (233)
.+....+.......++++=.+|.+.++++.|+.+.++.+.+.- ....-+..-|.+|..+|.+..|..-++.++
T Consensus 170 ~L~~a~~~~il~Rml~nLK~~~~~~~~~~~AL~~~e~ll~l~P------~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~ 243 (269)
T PRK10941 170 DLDEADNIEVIRKLLDTLKAALMEEKQMELALRASEALLQFDP------EDPYEIRDRGLIYAQLDCEHVALSDLSYFVE 243 (269)
T ss_pred HcCCCCHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHhCC------CCHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 3444455666778899999999999999999999999997632 222345678999999999999999999988
Q ss_pred cCCCCCCchHHHHHHHHHHHH
Q 026767 156 QVDAFLRSDQNRCATKLISAY 176 (233)
Q Consensus 156 ~~~~~~~~~e~~~l~~L~~a~ 176 (233)
..+.- ..+..+......+
T Consensus 244 ~~P~d---p~a~~ik~ql~~l 261 (269)
T PRK10941 244 QCPED---PISEMIRAQIHSI 261 (269)
T ss_pred hCCCc---hhHHHHHHHHHHH
Confidence 44422 2344454444444
No 324
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=89.17 E-value=1.5 Score=29.39 Aligned_cols=34 Identities=21% Similarity=0.071 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhc
Q 026767 48 ASDALAKAARALE-DAVPEDAIQLYTDACIMLEED 81 (233)
Q Consensus 48 ~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~ 81 (233)
.|..+.+.|.-+. .|+.++|+.+|++++.+..+.
T Consensus 7 ~A~~~I~kaL~~dE~g~~e~Al~~Y~~gi~~l~eg 41 (79)
T cd02679 7 QAFEEISKALRADEWGDKEQALAHYRKGLRELEEG 41 (79)
T ss_pred HHHHHHHHHhhhhhcCCHHHHHHHHHHHHHHHHHH
Confidence 4444455555555 466667777777777666543
No 325
>COG5091 SGT1 Suppressor of G2 allele of skp1 and related proteins [General function prediction only]
Probab=89.13 E-value=1.6 Score=36.33 Aligned_cols=94 Identities=12% Similarity=-0.034 Sum_probs=74.8
Q ss_pred HHHHHHHHHHhh----hCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHccCc
Q 026767 49 SDALAKAARALE----DAVPEDAIQLYTDACIMLEEDDKEQMAFDLYRAATNVYIKLEKYADAATFLLRWGLAADKCNAT 124 (233)
Q Consensus 49 a~~l~~lg~~~~----~g~~~~A~~~~~~Al~~~~~~g~~~~~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 124 (233)
+.++..+-..+. .-.+..|.++...|+-..+..|++...+.|-...+..|....+|.-|..||..|+.++.+...+
T Consensus 36 a~~lEk~~~~Fs~~~s~~~~~n~~e~~d~ALm~Ae~r~D~~~IG~~~~~~~v~~~~ik~Ye~a~~~F~~A~~~~~~d~L~ 115 (368)
T COG5091 36 AACLEKLYFGFSDWHSDATMENAKELLDKALMTAEGRGDRSKIGLVNFRYFVHFFNIKDYELAQSYFKKAKNLYVDDTLP 115 (368)
T ss_pred hhhHHHHHhhhhhhhcccChhhHHHHHHHHHHhhhccCCcceeeeehhhhHHHhhhHHHHHHHHHHHHHHHHHhhcccch
Confidence 344555544444 2457889999999999999999999999999999999999999999999999999998877777
Q ss_pred chHHHhHHHHHHHHHhhC
Q 026767 125 NSQCKAYLSAIIVYLYAN 142 (233)
Q Consensus 125 ~~~a~~~~~lg~~~~~~g 142 (233)
..+.+.-..|-.++-++.
T Consensus 116 ~We~rLet~L~~~~kkQ~ 133 (368)
T COG5091 116 LWEDRLETKLNKKNKKQK 133 (368)
T ss_pred HHHHHHHHHHhHhhHhhc
Confidence 666665566666665554
No 326
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=89.12 E-value=3.8 Score=36.36 Aligned_cols=99 Identities=14% Similarity=0.059 Sum_probs=66.3
Q ss_pred HHHHHHHHhhhCCHHHHHHHHHHHHHHHHhcC-----------C-hHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Q 026767 51 ALAKAARALEDAVPEDAIQLYTDACIMLEEDD-----------K-EQMAFDLYRAATNVYIKLEKYADAATFLLRWGLAA 118 (233)
Q Consensus 51 ~l~~lg~~~~~g~~~~A~~~~~~Al~~~~~~g-----------~-~~~~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~ 118 (233)
+|......|.++.|..|+--|..|+++..... + ...+..+-..|..+|+++++.+-|+.+-.+++.+
T Consensus 179 AL~das~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI~l- 257 (569)
T PF15015_consen 179 ALKDASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSINL- 257 (569)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhhhc-
Confidence 34455555667777777777777777766432 1 2223345567888899999999999988888754
Q ss_pred hHccCcchHHHhHHHHHHHHHhhCCHHHHHHHHHHhh
Q 026767 119 DKCNATNSQCKAYLSAIIVYLYANDFKQAEKCYNDCS 155 (233)
Q Consensus 119 ~~~~~~~~~a~~~~~lg~~~~~~gd~~~A~~~~~~al 155 (233)
.+.--.-++.-+.|...+.+|.+|-+.+--+.
T Consensus 258 -----nP~~frnHLrqAavfR~LeRy~eAarSamia~ 289 (569)
T PF15015_consen 258 -----NPSYFRNHLRQAAVFRRLERYSEAARSAMIAD 289 (569)
T ss_pred -----CcchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22233345666778888888888877665543
No 327
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=88.98 E-value=0.45 Score=42.39 Aligned_cols=83 Identities=19% Similarity=0.149 Sum_probs=42.4
Q ss_pred hCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHccCcchHHHhHHHHHHHHHh
Q 026767 61 DAVPEDAIQLYTDACIMLEEDDKEQMAFDLYRAATNVYIKLEKYADAATFLLRWGLAADKCNATNSQCKAYLSAIIVYLY 140 (233)
Q Consensus 61 ~g~~~~A~~~~~~Al~~~~~~g~~~~~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~ 140 (233)
..+++.|+..|.+|+++-+..- ..+.+-+..+++.++|..|+.=+.+++++ .+...++|..-|.++.+
T Consensus 17 ~~~fd~avdlysKaI~ldpnca------~~~anRa~a~lK~e~~~~Al~Da~kaie~------dP~~~K~Y~rrg~a~m~ 84 (476)
T KOG0376|consen 17 DKVFDVAVDLYSKAIELDPNCA------IYFANRALAHLKVESFGGALHDALKAIEL------DPTYIKAYVRRGTAVMA 84 (476)
T ss_pred cchHHHHHHHHHHHHhcCCcce------eeechhhhhheeechhhhHHHHHHhhhhc------CchhhheeeeccHHHHh
Confidence 4555566666666655544321 12223334455555555555555555543 24444555555555555
Q ss_pred hCCHHHHHHHHHHhh
Q 026767 141 ANDFKQAEKCYNDCS 155 (233)
Q Consensus 141 ~gd~~~A~~~~~~al 155 (233)
.+++.+|...|+...
T Consensus 85 l~~~~~A~~~l~~~~ 99 (476)
T KOG0376|consen 85 LGEFKKALLDLEKVK 99 (476)
T ss_pred HHHHHHHHHHHHHhh
Confidence 555555555555544
No 328
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=88.90 E-value=1.4 Score=28.47 Aligned_cols=22 Identities=9% Similarity=-0.114 Sum_probs=13.7
Q ss_pred HHhccHHHHHHHHHHHHHHHhH
Q 026767 99 IKLEKYADAATFLLRWGLAADK 120 (233)
Q Consensus 99 ~~~g~~~~A~~~~~~al~~~~~ 120 (233)
=+.|+|.+|+.+|.++++.+..
T Consensus 16 D~~g~~~~A~~~Y~~ai~~l~~ 37 (69)
T PF04212_consen 16 DEAGNYEEALELYKEAIEYLMQ 37 (69)
T ss_dssp HHTTSHHHHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHHHHH
Confidence 3466666666666666665543
No 329
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=88.77 E-value=1.6 Score=29.00 Aligned_cols=34 Identities=24% Similarity=0.252 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 026767 8 AAKHMESAAALAKELHNWREVADFYRKASELYNE 41 (233)
Q Consensus 8 ~a~~~~~~g~~~~~~g~~~eA~~~~~~A~~l~~~ 41 (233)
-|..|..-|.-+-..|++.+|+.+|++|+++..+
T Consensus 5 ~A~~~a~~AVe~D~~gr~~eAi~~Y~~aIe~L~q 38 (75)
T cd02682 5 MARKYAINAVKAEKEGNAEDAITNYKKAIEVLSQ 38 (75)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence 3445555555555667777777777766666544
No 330
>PF05053 Menin: Menin; InterPro: IPR007747 MEN1, the gene responsible for multiple endocrine neoplasia type 1, is a tumour suppressor gene that encodes a protein called Menin which may be an atypical GTPase stimulated by nm23 [].; GO: 0005634 nucleus; PDB: 3RE2_A 3U84_B 3U86_A 3U88_B 3U85_A.
Probab=88.63 E-value=17 Score=33.56 Aligned_cols=102 Identities=17% Similarity=0.122 Sum_probs=76.4
Q ss_pred CHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh-h--CCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHH
Q 026767 24 NWREVADFYRKASELYNECGRSQPASDALAKAARALE-D--AVPEDAIQLYTDACIMLEEDDKEQMAFDLYRAATNVYIK 100 (233)
Q Consensus 24 ~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~-~--g~~~~A~~~~~~Al~~~~~~g~~~~~~~~l~~lg~~~~~ 100 (233)
+-.|-..+-++-+-+.-..|....--.++.++|.+-+ . ..-..+++.|.+|+...+..-+.... .-|.-+|-.|.+
T Consensus 252 d~~e~~~lqq~lLw~lyd~ghl~~YPmALg~LadLeEi~pt~~r~~~~~l~~~AI~sa~~~Y~n~Hv-YPYty~gg~~yR 330 (618)
T PF05053_consen 252 DSVELAQLQQDLLWLLYDMGHLARYPMALGNLADLEEIDPTPGRPTPLELFNEAISSARTYYNNHHV-YPYTYLGGYYYR 330 (618)
T ss_dssp EEHHHHHHHHHHHHHHHHTTTTTT-HHHHHHHHHHHHHS--TTS--HHHHHHHHHHHHHHHCTT--S-HHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHhcCchhhCchhhhhhHhHHhhccCCCCCCHHHHHHHHHHHHHHHhcCCcc-ccceehhhHHHH
Confidence 4457777888888888899999888899999999877 3 34466799999999988876543332 478889999999
Q ss_pred hccHHHHHHHHHHHHHHHhHccCcch
Q 026767 101 LEKYADAATFLLRWGLAADKCNATNS 126 (233)
Q Consensus 101 ~g~~~~A~~~~~~al~~~~~~~~~~~ 126 (233)
.++|.+|+.+.-.+..+.+.-+-.+.
T Consensus 331 ~~~~~eA~~~Wa~aa~Vi~~YnY~re 356 (618)
T PF05053_consen 331 HKRYREALRSWAEAADVIRKYNYSRE 356 (618)
T ss_dssp TT-HHHHHHHHHHHHHHHTTSB--GG
T ss_pred HHHHHHHHHHHHHHHHHHHHcccCcc
Confidence 99999999999999888776554433
No 331
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=88.54 E-value=0.32 Score=41.59 Aligned_cols=98 Identities=20% Similarity=0.105 Sum_probs=74.0
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCChHH
Q 026767 8 AAKHMESAAALAKELHNWREVADFYRKASELYNECGRSQPASDALAKAARALE-DAVPEDAIQLYTDACIMLEEDDKEQM 86 (233)
Q Consensus 8 ~a~~~~~~g~~~~~~g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~~~~ 86 (233)
.|+-..-.+.-....|.+++|++.|..|+.+ ....|..+.+-+.++. ...+..|++-|..|+++-.+...
T Consensus 113 qa~e~k~~A~eAln~G~~~~ai~~~t~ai~l------np~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~--- 183 (377)
T KOG1308|consen 113 QANDKKVQASEALNDGEFDTAIELFTSAIEL------NPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAK--- 183 (377)
T ss_pred HHHHHHHHHHHHhcCcchhhhhccccccccc------CCchhhhcccccceeeeccCCchhhhhhhhhhccCccccc---
Confidence 3444444444445589999999999999887 4567888888999998 79999999999999999876542
Q ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Q 026767 87 AFDLYRAATNVYIKLEKYADAATFLLRWGLA 117 (233)
Q Consensus 87 ~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~ 117 (233)
-+---|..+..+|++.+|...+..+..+
T Consensus 184 ---~ykfrg~A~rllg~~e~aa~dl~~a~kl 211 (377)
T KOG1308|consen 184 ---GYKFRGYAERLLGNWEEAAHDLALACKL 211 (377)
T ss_pred ---ccchhhHHHHHhhchHHHHHHHHHHHhc
Confidence 2223344455689999999999988754
No 332
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=88.45 E-value=19 Score=32.68 Aligned_cols=159 Identities=13% Similarity=0.059 Sum_probs=109.1
Q ss_pred HHcCCHHHHHHHHHHHHHHHHH---cCCchHHHHHHHHHHHHhh--hCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 026767 20 KELHNWREVADFYRKASELYNE---CGRSQPASDALAKAARALE--DAVPEDAIQLYTDACIMLEEDDKEQMAFDLYRAA 94 (233)
Q Consensus 20 ~~~g~~~eA~~~~~~A~~l~~~---~g~~~~~a~~l~~lg~~~~--~g~~~~A~~~~~~Al~~~~~~g~~~~~~~~l~~l 94 (233)
-..|+.+.-.+-|++|+.-..- ...-..-.-.+.|-+..-+ ..+.+.+.+.|+.++++.+.-. -.-+.+..-.
T Consensus 333 e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~lIPHkk--FtFaKiWlmy 410 (677)
T KOG1915|consen 333 ESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDLIPHKK--FTFAKIWLMY 410 (677)
T ss_pred HhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcCccc--chHHHHHHHH
Confidence 3468888888888888753211 0001111223444444433 2899999999999999877433 2334677888
Q ss_pred HHHHHHhccHHHHHHHHHHHHHHHhHccCcchHHHhHHHHHHHHHhhCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHH
Q 026767 95 TNVYIKLEKYADAATFLLRWGLAADKCNATNSQCKAYLSAIIVYLYANDFKQAEKCYNDCSQVDAFLRSDQNRCATKLIS 174 (233)
Q Consensus 95 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~gd~~~A~~~~~~al~~~~~~~~~e~~~l~~L~~ 174 (233)
+.+-+++.+...|...+-.|+-.|-+ .+.+-.-..+-++++++++.++.|++.+... ++.|..-...++
T Consensus 411 A~feIRq~~l~~ARkiLG~AIG~cPK-------~KlFk~YIelElqL~efDRcRkLYEkfle~~----Pe~c~~W~kyaE 479 (677)
T KOG1915|consen 411 AQFEIRQLNLTGARKILGNAIGKCPK-------DKLFKGYIELELQLREFDRCRKLYEKFLEFS----PENCYAWSKYAE 479 (677)
T ss_pred HHHHHHHcccHHHHHHHHHHhccCCc-------hhHHHHHHHHHHHHhhHHHHHHHHHHHHhcC----hHhhHHHHHHHH
Confidence 99999999999999999998866533 3445566677788899999999999998442 233455555555
Q ss_pred HH-hcCCHHHHHHHHhhc
Q 026767 175 AY-TEGDVEEIKRVAQSS 191 (233)
Q Consensus 175 a~-~~gd~~~a~~~~~~~ 191 (233)
.- ..||++.++...+-+
T Consensus 480 lE~~LgdtdRaRaifelA 497 (677)
T KOG1915|consen 480 LETSLGDTDRARAIFELA 497 (677)
T ss_pred HHHHhhhHHHHHHHHHHH
Confidence 44 468999988877666
No 333
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain.
Probab=88.09 E-value=2.3 Score=27.97 Aligned_cols=20 Identities=35% Similarity=0.385 Sum_probs=10.2
Q ss_pred hCCHHHHHHHHHHHHHHHHh
Q 026767 61 DAVPEDAIQLYTDACIMLEE 80 (233)
Q Consensus 61 ~g~~~~A~~~~~~Al~~~~~ 80 (233)
.|++++|+.+|.+|++.+..
T Consensus 21 ~g~~~eAl~~Y~~a~e~l~~ 40 (77)
T smart00745 21 AGDYEEALELYKKAIEYLLE 40 (77)
T ss_pred cCCHHHHHHHHHHHHHHHHH
Confidence 35555555555555555443
No 334
>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins.
Probab=88.08 E-value=8.5 Score=28.20 Aligned_cols=87 Identities=16% Similarity=0.066 Sum_probs=60.1
Q ss_pred HHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCC--------h-HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHc
Q 026767 52 LAKAARALE-DAVPEDAIQLYTDACIMLEEDDK--------E-QMAFDLYRAATNVYIKLEKYADAATFLLRWGLAADKC 121 (233)
Q Consensus 52 l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~--------~-~~~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~ 121 (233)
+..+|.... .+++-.++-+|++|+.+..+... . ........|++.++...|+.+=.+.|++-|-+.....
T Consensus 4 htllAd~a~~~~~~l~si~hYQqAls~se~~~~~~~~el~dll~i~VisCHNLA~FWR~~gd~~yELkYLqlASE~VltL 83 (140)
T PF10952_consen 4 HTLLADQAFKEADPLRSILHYQQALSLSEEIDESNEIELEDLLTISVISCHNLADFWRSQGDSDYELKYLQLASEKVLTL 83 (140)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHhhHHHHHHHcCChHHHHHHHHHHHHHHHHh
Confidence 455677666 79999999999999999888741 1 1112356799999999999999999998776654433
Q ss_pred c--CcchHHHhH-HHHHHHH
Q 026767 122 N--ATNSQCKAY-LSAIIVY 138 (233)
Q Consensus 122 ~--~~~~~a~~~-~~lg~~~ 138 (233)
- -+.....++ .++|.|.
T Consensus 84 iPQCp~~~C~afi~sLGCCk 103 (140)
T PF10952_consen 84 IPQCPNTECEAFIDSLGCCK 103 (140)
T ss_pred ccCCCCcchHHHHHhhhccH
Confidence 1 123333443 6666654
No 335
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=87.72 E-value=6.1 Score=34.85 Aligned_cols=87 Identities=8% Similarity=0.078 Sum_probs=67.4
Q ss_pred HHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHccCcchHHHhHHHHHHHHHhhCCHHHHH
Q 026767 69 QLYTDACIMLEEDDKEQMAFDLYRAATNVYIKLEKYADAATFLLRWGLAADKCNATNSQCKAYLSAIIVYLYANDFKQAE 148 (233)
Q Consensus 69 ~~~~~Al~~~~~~g~~~~~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~gd~~~A~ 148 (233)
+-++.=++-++...-....-..+..+|..|...|+.+.|+..|-|+...|... ......+.++..|-..+|++..-.
T Consensus 131 e~L~~eLk~yK~n~iKEsiRra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~---khvInm~ln~i~VSI~~~nw~hv~ 207 (466)
T KOG0686|consen 131 EKLDNELKSYKDNLIKESIRRALEDLGDHYLDCGQLDNALRCYSRARDYCTSA---KHVINMCLNLILVSIYMGNWGHVL 207 (466)
T ss_pred HHHHHHHHHhhcchhhHHHHHHHHHHHHHHHHhccHHHHHhhhhhhhhhhcch---HHHHHHHHHHHHHHHhhcchhhhh
Confidence 33444445555555444445689999999999999999999999999988753 345567899999999999999988
Q ss_pred HHHHHhhcCC
Q 026767 149 KCYNDCSQVD 158 (233)
Q Consensus 149 ~~~~~al~~~ 158 (233)
.+-.++.+.+
T Consensus 208 sy~~~A~st~ 217 (466)
T KOG0686|consen 208 SYISKAESTP 217 (466)
T ss_pred hHHHHHHhCc
Confidence 8888887554
No 336
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=87.60 E-value=13 Score=33.09 Aligned_cols=105 Identities=16% Similarity=0.067 Sum_probs=74.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH---c--------CCch-HHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHH
Q 026767 11 HMESAAALAKELHNWREVADFYRKASELYNE---C--------GRSQ-PASDALAKAARALE-DAVPEDAIQLYTDACIM 77 (233)
Q Consensus 11 ~~~~~g~~~~~~g~~~eA~~~~~~A~~l~~~---~--------g~~~-~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~ 77 (233)
++..+...|+ ++.|.-|.--|..|+++..+ . ||.. -+..+-.++..+|. .++++-|+.+-.+++.+
T Consensus 179 AL~das~~yr-qk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI~l 257 (569)
T PF15015_consen 179 ALKDASSCYR-QKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSINL 257 (569)
T ss_pred HHHHHHHHHh-hHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhhhc
Confidence 4555555555 78899999999999998754 2 2222 23345678888898 79999999999999987
Q ss_pred HHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHcc
Q 026767 78 LEEDDKEQMAFDLYRAATNVYIKLEKYADAATFLLRWGLAADKCN 122 (233)
Q Consensus 78 ~~~~g~~~~~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~ 122 (233)
.+..- .-+..-+.++..+.+|.+|...+--+.-++--.+
T Consensus 258 nP~~f------rnHLrqAavfR~LeRy~eAarSamia~ymywl~g 296 (569)
T PF15015_consen 258 NPSYF------RNHLRQAAVFRRLERYSEAARSAMIADYMYWLSG 296 (569)
T ss_pred Ccchh------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 66432 1233456677788999999988777766654443
No 337
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=87.36 E-value=1.7 Score=29.08 Aligned_cols=35 Identities=23% Similarity=0.119 Sum_probs=16.0
Q ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 026767 5 PWDAAKHMESAAALAKELHNWREVADFYRKASELY 39 (233)
Q Consensus 5 ~~~~a~~~~~~g~~~~~~g~~~eA~~~~~~A~~l~ 39 (233)
.+..|-.+.+-|.-+-+.|+.++|+.+|++++...
T Consensus 4 ~~~~A~~~I~kaL~~dE~g~~e~Al~~Y~~gi~~l 38 (79)
T cd02679 4 YYKQAFEEISKALRADEWGDKEQALAHYRKGLREL 38 (79)
T ss_pred HHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHHH
Confidence 34444444444444444444444444444444443
No 338
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=87.26 E-value=1.1 Score=36.40 Aligned_cols=56 Identities=14% Similarity=0.077 Sum_probs=43.8
Q ss_pred HHHHhccHHHHHHHHHHHHHHHhHccCcchHHHhHHHHHHHHHhhCCHHHHHHHHHHhhcCC
Q 026767 97 VYIKLEKYADAATFLLRWGLAADKCNATNSQCKAYLSAIIVYLYANDFKQAEKCYNDCSQVD 158 (233)
Q Consensus 97 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~gd~~~A~~~~~~al~~~ 158 (233)
...+.++++.|.+.|.+++++.- ..+..++.+|....+.|+++.|.+.|++.+.+.
T Consensus 4 ~~~~~~D~~aaaely~qal~lap------~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ld 59 (287)
T COG4976 4 MLAESGDAEAAAELYNQALELAP------EWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELD 59 (287)
T ss_pred hhcccCChHHHHHHHHHHhhcCc------hhhhhhhhcchhhhhcccHHHHHHHHHHHHcCC
Confidence 44567888999999999987642 234467888999999999999999999988553
No 339
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=87.07 E-value=3.5 Score=40.47 Aligned_cols=91 Identities=19% Similarity=0.080 Sum_probs=65.1
Q ss_pred CHHHHHHHHHHHHHHHHHcCCc-hH---HHHHHHHHHHHhh-h----CCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 026767 24 NWREVADFYRKASELYNECGRS-QP---ASDALAKAARALE-D----AVPEDAIQLYTDACIMLEEDDKEQMAFDLYRAA 94 (233)
Q Consensus 24 ~~~eA~~~~~~A~~l~~~~g~~-~~---~a~~l~~lg~~~~-~----g~~~~A~~~~~~Al~~~~~~g~~~~~~~~l~~l 94 (233)
|.=-|...|++|+..|++.+.. .| .-.+..++|..+. + |++ +.|.+|+.-|.......++-.=+..-
T Consensus 483 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~ 558 (932)
T PRK13184 483 DAFLAEKLYDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKASEQGDP----RDFTQALSEFSYLHGGVGAPLEYLGK 558 (932)
T ss_pred HHHHhhHHHHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHHhcCCh----HHHHHHHHHHHHhcCCCCCchHHHhH
Confidence 3345677888888888887653 22 2245667777655 3 444 77888888888877666655455666
Q ss_pred HHHHHHhccHHHHHHHHHHHHHHH
Q 026767 95 TNVYIKLEKYADAATFLLRWGLAA 118 (233)
Q Consensus 95 g~~~~~~g~~~~A~~~~~~al~~~ 118 (233)
+.||.++|+|++=+++|.-|+.-+
T Consensus 559 ~~~~~~~~~~~~~~~~~~~~~~~~ 582 (932)
T PRK13184 559 ALVYQRLGEYNEEIKSLLLALKRY 582 (932)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHhc
Confidence 778999999999999999988643
No 340
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=86.90 E-value=13 Score=33.43 Aligned_cols=102 Identities=21% Similarity=0.216 Sum_probs=58.0
Q ss_pred HHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHccCcchHHHh
Q 026767 52 LAKAARALE-DAVPEDAIQLYTDACIMLEEDDKEQMAFDLYRAATNVYIKLEKYADAATFLLRWGLAADKCNATNSQCKA 130 (233)
Q Consensus 52 l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~~~~~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~ 130 (233)
..+++..++ +|.++.|++.-+.--. .. ++.+++|+.+.|.+..+ +..+ ...
T Consensus 298 ~~~i~~fL~~~G~~e~AL~~~~D~~~--------------rF---eLAl~lg~L~~A~~~a~-------~~~~----~~~ 349 (443)
T PF04053_consen 298 GQSIARFLEKKGYPELALQFVTDPDH--------------RF---ELALQLGNLDIALEIAK-------ELDD----PEK 349 (443)
T ss_dssp HHHHHHHHHHTT-HHHHHHHSS-HHH--------------HH---HHHHHCT-HHHHHHHCC-------CCST----HHH
T ss_pred HHHHHHHHHHCCCHHHHHhhcCChHH--------------Hh---HHHHhcCCHHHHHHHHH-------hcCc----HHH
Confidence 455666666 6887777766432211 11 23456788877776443 2221 236
Q ss_pred HHHHHHHHHhhCCHHHHHHHHHHhhcCCC--C--CCchHHHHHHHHHHHH-hcCCH
Q 026767 131 YLSAIIVYLYANDFKQAEKCYNDCSQVDA--F--LRSDQNRCATKLISAY-TEGDV 181 (233)
Q Consensus 131 ~~~lg~~~~~~gd~~~A~~~~~~al~~~~--~--~~~~e~~~l~~L~~a~-~~gd~ 181 (233)
|..||.+.+.+|+++-|+++|+++-.... + .-++...-|..|+... ..|+.
T Consensus 350 W~~Lg~~AL~~g~~~lAe~c~~k~~d~~~L~lLy~~~g~~~~L~kl~~~a~~~~~~ 405 (443)
T PF04053_consen 350 WKQLGDEALRQGNIELAEECYQKAKDFSGLLLLYSSTGDREKLSKLAKIAEERGDI 405 (443)
T ss_dssp HHHHHHHHHHTTBHHHHHHHHHHCT-HHHHHHHHHHCT-HHHHHHHHHHHHHTT-H
T ss_pred HHHHHHHHHHcCCHHHHHHHHHhhcCccccHHHHHHhCCHHHHHHHHHHHHHccCH
Confidence 78899999999999999999998753322 1 1234445556665544 44543
No 341
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.74 E-value=13 Score=31.03 Aligned_cols=132 Identities=15% Similarity=0.064 Sum_probs=78.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH---------HHHcCCchHHH------------HHHHHHHHHhh-h-CCHHHH
Q 026767 11 HMESAAALAKELHNWREVADFYRKASEL---------YNECGRSQPAS------------DALAKAARALE-D-AVPEDA 67 (233)
Q Consensus 11 ~~~~~g~~~~~~g~~~eA~~~~~~A~~l---------~~~~g~~~~~a------------~~l~~lg~~~~-~-g~~~~A 67 (233)
...-.|.+|..-+++++|.....+...+ +.+.....-+- ..+..+|..+. . +--
T Consensus 110 ~~l~aa~i~~~~~~~deAl~~~~~~~~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~ided~tLtQLA~awv~la~gg--- 186 (299)
T KOG3081|consen 110 DLLLAAIIYMHDGDFDEALKALHLGENLEAAALNVQILLKMHRFDLAEKELKKMQQIDEDATLTQLAQAWVKLATGG--- 186 (299)
T ss_pred HHHHhhHHhhcCCChHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhccc---
Confidence 3455678888899999998876542221 11111111111 12334444443 1 111
Q ss_pred HHHHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHccCcchHHHhHHHHHHHHHhhCCHHH
Q 026767 68 IQLYTDACIMLEEDDK-EQMAFDLYRAATNVYIKLEKYADAATFLLRWGLAADKCNATNSQCKAYLSAIIVYLYANDFKQ 146 (233)
Q Consensus 68 ~~~~~~Al~~~~~~g~-~~~~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~gd~~~ 146 (233)
.-++.|.=+|++... ...--.+++..+.+++.+|+|++|...++.++.- ...-..++.|+..+-+..|...+
T Consensus 187 -ek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~k------d~~dpetL~Nliv~a~~~Gkd~~ 259 (299)
T KOG3081|consen 187 -EKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDK------DAKDPETLANLIVLALHLGKDAE 259 (299)
T ss_pred -hhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhc------cCCCHHHHHHHHHHHHHhCCChH
Confidence 113444445554432 2222357899999999999999999999999863 22235678888888888997766
Q ss_pred HHHHHH
Q 026767 147 AEKCYN 152 (233)
Q Consensus 147 A~~~~~ 152 (233)
+...+-
T Consensus 260 ~~~r~l 265 (299)
T KOG3081|consen 260 VTERNL 265 (299)
T ss_pred HHHHHH
Confidence 655443
No 342
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=86.66 E-value=21 Score=31.17 Aligned_cols=140 Identities=8% Similarity=0.005 Sum_probs=94.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcC----------CchHHH-------------HHHHHHHHHhh-hCCH
Q 026767 9 AKHMESAAALAKELHNWREVADFYRKASELYNECG----------RSQPAS-------------DALAKAARALE-DAVP 64 (233)
Q Consensus 9 a~~~~~~g~~~~~~g~~~eA~~~~~~A~~l~~~~g----------~~~~~a-------------~~l~~lg~~~~-~g~~ 64 (233)
..++.+++.+++.+|++..|.++.++|+=.+...= -..+.+ .++.+-...+. +|-+
T Consensus 40 idtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i~~L~~RG~~ 119 (360)
T PF04910_consen 40 IDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYIQSLGRRGCW 119 (360)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHHHHHHhcCcH
Confidence 35788899999999999999999999998876310 000111 23333344444 6899
Q ss_pred HHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH-HhH-ccCcchHHHhHHHHHHHHHhhC
Q 026767 65 EDAIQLYTDACIMLEEDDKEQMAFDLYRAATNVYIKLEKYADAATFLLRWGLA-ADK-CNATNSQCKAYLSAIIVYLYAN 142 (233)
Q Consensus 65 ~~A~~~~~~Al~~~~~~g~~~~~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~-~~~-~~~~~~~a~~~~~lg~~~~~~g 142 (233)
..|+++.+--+.+-... |+.+ ++.-|-...++.++|+==+++++..... .+. ....+ ..-++++++++..+
T Consensus 120 rTAlE~~KlLlsLdp~~-DP~g---~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~~lP---n~a~S~aLA~~~l~ 192 (360)
T PF04910_consen 120 RTALEWCKLLLSLDPDE-DPLG---VLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLSLLP---NFAFSIALAYFRLE 192 (360)
T ss_pred HHHHHHHHHHHhcCCCC-Ccch---hHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhhhCc---cHHHHHHHHHHHhc
Confidence 99999888777776654 4443 5556666777889998888888765542 111 11112 23477888888888
Q ss_pred CH---------------HHHHHHHHHhh
Q 026767 143 DF---------------KQAEKCYNDCS 155 (233)
Q Consensus 143 d~---------------~~A~~~~~~al 155 (233)
+- ++|...+.+|+
T Consensus 193 ~~~~~~~~~~~~~~~~~~~A~~~L~~Ai 220 (360)
T PF04910_consen 193 KEESSQSSAQSGRSENSESADEALQKAI 220 (360)
T ss_pred CccccccccccccccchhHHHHHHHHHH
Confidence 87 88888888886
No 343
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.65 E-value=20 Score=35.62 Aligned_cols=148 Identities=13% Similarity=0.134 Sum_probs=78.8
Q ss_pred HHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHH
Q 026767 30 DFYRKASELYNECGRSQPASDALAKAARALEDAVPEDAIQLYTDACIMLEEDDKEQMAFDLYRAATNVYIKLEKYADAAT 109 (233)
Q Consensus 30 ~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~~g~~~~A~~~~~~Al~~~~~~g~~~~~~~~l~~lg~~~~~~g~~~~A~~ 109 (233)
++|++|..+|++.+-...+.+++..= -+..+.|. +..+..+.+ .++..+|....+.|...+|++
T Consensus 1062 ~LyEEAF~ifkkf~~n~~A~~VLie~-----i~~ldRA~-------efAe~~n~p----~vWsqlakAQL~~~~v~dAie 1125 (1666)
T KOG0985|consen 1062 QLYEEAFAIFKKFDMNVSAIQVLIEN-----IGSLDRAY-------EFAERCNEP----AVWSQLAKAQLQGGLVKDAIE 1125 (1666)
T ss_pred hHHHHHHHHHHHhcccHHHHHHHHHH-----hhhHHHHH-------HHHHhhCCh----HHHHHHHHHHHhcCchHHHHH
Confidence 56777777777766655554433210 13333333 333333332 366777777777777777777
Q ss_pred HHHHHHHHHhHccCcchHHHhHHHHHHHHHhhCCHHHHHHHHHHhhcC-C----------------------CCCCchHH
Q 026767 110 FLLRWGLAADKCNATNSQCKAYLSAIIVYLYANDFKQAEKCYNDCSQV-D----------------------AFLRSDQN 166 (233)
Q Consensus 110 ~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~gd~~~A~~~~~~al~~-~----------------------~~~~~~e~ 166 (233)
.|-++= ++ ..|.....+.-..|.|++-.+++..+-.- . .|......
T Consensus 1126 Syikad-------Dp----s~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id~eLi~AyAkt~rl~elE~fi~gpN~ 1194 (1666)
T KOG0985|consen 1126 SYIKAD-------DP----SNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYIDSELIFAYAKTNRLTELEEFIAGPNV 1194 (1666)
T ss_pred HHHhcC-------Cc----HHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccchHHHHHHHHHhchHHHHHHHhcCCCc
Confidence 766542 11 24555666666667776666666665411 0 01001112
Q ss_pred HHHHHHHHHH-hcCCHHHHHHHHhhc-ccccchHHHHHHh
Q 026767 167 RCATKLISAY-TEGDVEEIKRVAQSS-AISNLDHVIIKLA 204 (233)
Q Consensus 167 ~~l~~L~~a~-~~gd~~~a~~~~~~~-~~~~ld~~~~~l~ 204 (233)
.-+...|+-+ +.+-+++|.-....- -|..|....+.|+
T Consensus 1195 A~i~~vGdrcf~~~~y~aAkl~y~~vSN~a~La~TLV~Lg 1234 (1666)
T KOG0985|consen 1195 ANIQQVGDRCFEEKMYEAAKLLYSNVSNFAKLASTLVYLG 1234 (1666)
T ss_pred hhHHHHhHHHhhhhhhHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 2345566544 677777666655544 4555555444443
No 344
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=86.24 E-value=2.7 Score=27.90 Aligned_cols=34 Identities=29% Similarity=0.255 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhc
Q 026767 48 ASDALAKAARALE-DAVPEDAIQLYTDACIMLEED 81 (233)
Q Consensus 48 ~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~ 81 (233)
.|..+...|.-+. .|++.+|+.+|++|++++.+.
T Consensus 5 ~A~~~a~~AVe~D~~gr~~eAi~~Y~~aIe~L~q~ 39 (75)
T cd02682 5 MARKYAINAVKAEKEGNAEDAITNYKKAIEVLSQI 39 (75)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHH
Confidence 3445555566666 688888888888888777653
No 345
>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
Probab=86.16 E-value=3.5 Score=27.17 Aligned_cols=20 Identities=25% Similarity=0.310 Sum_probs=10.8
Q ss_pred hCCHHHHHHHHHHHHHHHHh
Q 026767 61 DAVPEDAIQLYTDACIMLEE 80 (233)
Q Consensus 61 ~g~~~~A~~~~~~Al~~~~~ 80 (233)
.|++++|+.+|.+|++.+..
T Consensus 19 ~g~y~eA~~~Y~~aie~l~~ 38 (75)
T cd02678 19 AGNYEEALRLYQHALEYFMH 38 (75)
T ss_pred cCCHHHHHHHHHHHHHHHHH
Confidence 35555555555555555543
No 346
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=85.93 E-value=31 Score=32.49 Aligned_cols=99 Identities=21% Similarity=0.137 Sum_probs=69.0
Q ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHhHccCcchHHHhHHHHHHHHHhhCCHHHHHHHHHHhhcCCCCCCchHHHHH
Q 026767 90 LYRAATNVYIKLEKYADAATFLLRWGLAADKCNATNSQCKAYLSAIIVYLYANDFKQAEKCYNDCSQVDAFLRSDQNRCA 169 (233)
Q Consensus 90 ~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~gd~~~A~~~~~~al~~~~~~~~~e~~~l 169 (233)
++-+-+.-+.+..+|..+++.|..++..+........-++...++..||+.+...++|.+++++|-.........+..
T Consensus 356 iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~-- 433 (872)
T KOG4814|consen 356 LLWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLL-- 433 (872)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHH--
Confidence 444556677889999999999999998766555555558888999999999999999999999986433211111111
Q ss_pred HHHHHHHhcCCHHHHHHHHhhc
Q 026767 170 TKLISAYTEGDVEEIKRVAQSS 191 (233)
Q Consensus 170 ~~L~~a~~~gd~~~a~~~~~~~ 191 (233)
.+-.+...+..++|..++...
T Consensus 434 -~~~~~~~E~~Se~AL~~~~~~ 454 (872)
T KOG4814|consen 434 -MLQSFLAEDKSEEALTCLQKI 454 (872)
T ss_pred -HHHHHHHhcchHHHHHHHHHH
Confidence 111122456777777776655
No 347
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=85.86 E-value=22 Score=30.71 Aligned_cols=160 Identities=13% Similarity=0.135 Sum_probs=110.0
Q ss_pred CCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHccCcch-HHHhHHHHHH-HHH
Q 026767 62 AVPEDAIQLYTDACIMLEEDDKEQMAFDLYRAATNVYIKLEKYADAATFLLRWGLAADKCNATNS-QCKAYLSAII-VYL 139 (233)
Q Consensus 62 g~~~~A~~~~~~Al~~~~~~g~~~~~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~-~a~~~~~lg~-~~~ 139 (233)
+|.++|+++.++-.+-......+.....+...++.++...|+..++.+.+...-........-.. .-..|+.++- .|.
T Consensus 89 ~D~~~al~~Le~i~~~~~~~~e~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~~ld~~~~v~~~Vh~~fY~lssqYyk 168 (380)
T KOG2908|consen 89 SDKDEALEFLEKIIEKLKEYKEPDAVIYILTEIARLKLEINDLKEIKKLLDDLKSMLDSLDGVTSNVHSSFYSLSSQYYK 168 (380)
T ss_pred ccHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcccCCChhhhhhHHHHHHHHHH
Confidence 79999999999999999998887677788899999999999999999999888776655443333 3334555544 455
Q ss_pred hhCCHHHHHHHHHHhhcCCCC---CCchHHHHHHHHHHHHhcCC-HHHHHHHHhhcccccc----hHHHHHHhccCCCCc
Q 026767 140 YANDFKQAEKCYNDCSQVDAF---LRSDQNRCATKLISAYTEGD-VEEIKRVAQSSAISNL----DHVIIKLARKLPTGD 211 (233)
Q Consensus 140 ~~gd~~~A~~~~~~al~~~~~---~~~~e~~~l~~L~~a~~~gd-~~~a~~~~~~~~~~~l----d~~~~~l~~~l~~~~ 211 (233)
..||+...-++.-+++..... ..++.......|+.+--.|| .=-+-+.+-.+++..| -.|...+..-...|+
T Consensus 169 ~~~d~a~yYr~~L~YL~~~d~~~l~~se~~~lA~~L~~aALLGe~iyNfGELL~HPilesL~gT~~eWL~dll~Afn~Gd 248 (380)
T KOG2908|consen 169 KIGDFASYYRHALLYLGCSDIDDLSESEKQDLAFDLSLAALLGENIYNFGELLAHPILESLKGTNREWLKDLLIAFNSGD 248 (380)
T ss_pred HHHhHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHhccccccHHHHHhhHHHHHhcCCcHHHHHHHHHHhccCC
Confidence 668998888887777754432 23333334444444333344 4455566666644444 257888877778888
Q ss_pred hh---hhhhhhcC
Q 026767 212 VS---ALKKANAV 221 (233)
Q Consensus 212 ~~---~~~~~~~~ 221 (233)
++ ++.+..-+
T Consensus 249 l~~f~~l~~~~~~ 261 (380)
T KOG2908|consen 249 LKRFESLKGVWGK 261 (380)
T ss_pred HHHHHHHHHHhcc
Confidence 87 66655544
No 348
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=85.30 E-value=9.7 Score=26.06 Aligned_cols=57 Identities=12% Similarity=0.103 Sum_probs=37.8
Q ss_pred chHHHhHHHHHHHHHhhCCHHHHHHHHHHhh-cCCCCCCchHHHHHHHHHHHHhcCCH
Q 026767 125 NSQCKAYLSAIIVYLYANDFKQAEKCYNDCS-QVDAFLRSDQNRCATKLISAYTEGDV 181 (233)
Q Consensus 125 ~~~a~~~~~lg~~~~~~gd~~~A~~~~~~al-~~~~~~~~~e~~~l~~L~~a~~~gd~ 181 (233)
+.-..+.+.++..+...|++++|.+.+-+.+ ..+.+.+..-...+..+.+.+..+|+
T Consensus 19 P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~p 76 (90)
T PF14561_consen 19 PDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGDP 76 (90)
T ss_dssp TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-H
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCCh
Confidence 3344677899999999999999999999988 44555554444556666666544544
No 349
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=85.09 E-value=6.9 Score=34.69 Aligned_cols=66 Identities=15% Similarity=0.106 Sum_probs=48.6
Q ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHc---cCcchHHHhHHHHHHHHHhhCCHHHHHHHHHHhh
Q 026767 89 DLYRAATNVYIKLEKYADAATFLLRWGLAADKC---NATNSQCKAYLSAIIVYLYANDFKQAEKCYNDCS 155 (233)
Q Consensus 89 ~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~---~~~~~~a~~~~~lg~~~~~~gd~~~A~~~~~~al 155 (233)
-++..+.++++-+|||..|++.++-. ++-++. ..+.-...++.-+|-+|+-+++|..|.+.|...+
T Consensus 123 FSligLlRvh~LLGDY~~Alk~l~~i-dl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL 191 (404)
T PF10255_consen 123 FSLIGLLRVHCLLGDYYQALKVLENI-DLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQIL 191 (404)
T ss_pred HHHHHHHHHHHhccCHHHHHHHhhcc-CcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35666778899999999999987632 221110 1122334567899999999999999999999987
No 350
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=85.06 E-value=2.7 Score=27.95 Aligned_cols=30 Identities=20% Similarity=0.301 Sum_probs=19.9
Q ss_pred HHHHHHHHhh-hCCHHHHHHHHHHHHHHHHh
Q 026767 51 ALAKAARALE-DAVPEDAIQLYTDACIMLEE 80 (233)
Q Consensus 51 ~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~ 80 (233)
-+..-|.-.. .|++++|+.+|.+|++.|..
T Consensus 8 ~l~~~Ave~D~~g~y~eAl~~Y~~aie~l~~ 38 (77)
T cd02683 8 EVLKRAVELDQEGRFQEALVCYQEGIDLLMQ 38 (77)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 3344444444 47888888888888877765
No 351
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=84.99 E-value=17 Score=28.75 Aligned_cols=65 Identities=12% Similarity=0.053 Sum_probs=43.6
Q ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHHhHccCcchHHHhHHHHHHHHHhhCCHHHHHHHHHHhh
Q 026767 91 YRAATNVYIKLEKYADAATFLLRWGLAADKCNATNSQCKAYLSAIIVYLYANDFKQAEKCYNDCS 155 (233)
Q Consensus 91 l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~gd~~~A~~~~~~al 155 (233)
+...+...+..|++++|...++++.+...+.......-..+...|.|-..+-+|++|.-.|.-..
T Consensus 32 ~s~~aI~~~H~~~~eeA~~~l~~a~~~v~~Lk~~l~~~pel~~ag~~~~a~QEyvEA~~l~~~l~ 96 (204)
T COG2178 32 LSGEAIFLLHRGDFEEAEKKLKKASEAVEKLKRLLAGFPELYFAGFVTTALQEYVEATLLYSILK 96 (204)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhcchHHHHHHHHHHHHHHh
Confidence 34445556678889999999988888777665433333344555667666778888877776543
No 352
>PF12854 PPR_1: PPR repeat
Probab=84.83 E-value=2 Score=23.54 Aligned_cols=25 Identities=16% Similarity=0.187 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHhccHHHHHHHHHH
Q 026767 89 DLYRAATNVYIKLEKYADAATFLLR 113 (233)
Q Consensus 89 ~~l~~lg~~~~~~g~~~~A~~~~~~ 113 (233)
.+++.+-..|++.|+.++|+++|++
T Consensus 8 ~ty~~lI~~~Ck~G~~~~A~~l~~~ 32 (34)
T PF12854_consen 8 VTYNTLIDGYCKAGRVDEAFELFDE 32 (34)
T ss_pred hHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 3677788888888888888887765
No 353
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=84.40 E-value=3.7 Score=27.32 Aligned_cols=34 Identities=21% Similarity=0.225 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 026767 8 AAKHMESAAALAKELHNWREVADFYRKASELYNE 41 (233)
Q Consensus 8 ~a~~~~~~g~~~~~~g~~~eA~~~~~~A~~l~~~ 41 (233)
.|..+..-|+-+-..|++++|+.+|.+|++.+..
T Consensus 5 ~a~~l~~~Ave~D~~g~y~eAl~~Y~~aie~l~~ 38 (77)
T cd02683 5 AAKEVLKRAVELDQEGRFQEALVCYQEGIDLLMQ 38 (77)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 4555666667777899999999999999998864
No 354
>smart00671 SEL1 Sel1-like repeats. These represent a subfamily of TPR (tetratricopeptide repeat) sequences.
Probab=84.24 E-value=2.2 Score=23.02 Aligned_cols=26 Identities=23% Similarity=0.197 Sum_probs=16.2
Q ss_pred HHHHHHHHhhhC-----CHHHHHHHHHHHHH
Q 026767 51 ALAKAARALEDA-----VPEDAIQLYTDACI 76 (233)
Q Consensus 51 ~l~~lg~~~~~g-----~~~~A~~~~~~Al~ 76 (233)
+..++|.+|..| ++.+|+.+|++|.+
T Consensus 3 a~~~lg~~~~~G~g~~~d~~~A~~~~~~Aa~ 33 (36)
T smart00671 3 AQYNLGQMYEYGLGVKKDLEKALEYYKKAAE 33 (36)
T ss_pred HHHHHHHHHHcCCCCCcCHHHHHHHHHHHHH
Confidence 445566666632 66777777777664
No 355
>PF12854 PPR_1: PPR repeat
Probab=84.10 E-value=2.5 Score=23.09 Aligned_cols=26 Identities=19% Similarity=0.234 Sum_probs=23.1
Q ss_pred HHhHHHHHHHHHhhCCHHHHHHHHHH
Q 026767 128 CKAYLSAIIVYLYANDFKQAEKCYND 153 (233)
Q Consensus 128 a~~~~~lg~~~~~~gd~~~A~~~~~~ 153 (233)
..+|..+...+.+.|+.++|.+.|++
T Consensus 7 ~~ty~~lI~~~Ck~G~~~~A~~l~~~ 32 (34)
T PF12854_consen 7 VVTYNTLIDGYCKAGRVDEAFELFDE 32 (34)
T ss_pred HhHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 35789999999999999999999876
No 356
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain.
Probab=84.03 E-value=3.4 Score=27.17 Aligned_cols=19 Identities=11% Similarity=-0.095 Sum_probs=9.2
Q ss_pred hccHHHHHHHHHHHHHHHh
Q 026767 101 LEKYADAATFLLRWGLAAD 119 (233)
Q Consensus 101 ~g~~~~A~~~~~~al~~~~ 119 (233)
.|++++|+.+|.++++.+.
T Consensus 21 ~g~~~eAl~~Y~~a~e~l~ 39 (77)
T smart00745 21 AGDYEEALELYKKAIEYLL 39 (77)
T ss_pred cCCHHHHHHHHHHHHHHHH
Confidence 4445555555555544443
No 357
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=83.81 E-value=1.8 Score=35.69 Aligned_cols=49 Identities=12% Similarity=0.103 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhh
Q 026767 7 DAAKHMESAAALAKELHNWREVADFYRKASELYNECGRSQPASDALAKAARALED 61 (233)
Q Consensus 7 ~~a~~~~~~g~~~~~~g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~~ 61 (233)
+.++.|+++|.++...|+.-+|+-+|-+|+.. -.|. ..+..|+..++..
T Consensus 14 ~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~----~~Pf--~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 14 SNGNPYNQLAVLASYQGDDLDAVYYYIRSLAV----RIPF--PSARENLQKLFEK 62 (278)
T ss_dssp TBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSS----SB----HHHHHHHHHHHHH
T ss_pred CCCCcccchhhhhccccchHHHHHHHHHHHhc----CCCc--HHHHHHHHHHHHH
Confidence 34678899999999999999999889888743 2232 4455666666653
No 358
>cd02656 MIT MIT: domain contained within Microtubule Interacting and Trafficking molecules. The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar sorting proteins and others. The molecular function of the MIT domain is unclear.
Probab=83.34 E-value=5.3 Score=26.14 Aligned_cols=19 Identities=32% Similarity=0.401 Sum_probs=9.2
Q ss_pred CCHHHHHHHHHHHHHHHHh
Q 026767 62 AVPEDAIQLYTDACIMLEE 80 (233)
Q Consensus 62 g~~~~A~~~~~~Al~~~~~ 80 (233)
|++++|+.+|..|++.+..
T Consensus 20 g~~~~Al~~Y~~a~e~l~~ 38 (75)
T cd02656 20 GNYEEALELYKEALDYLLQ 38 (75)
T ss_pred CCHHHHHHHHHHHHHHHHH
Confidence 4445555555555544443
No 359
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=83.26 E-value=35 Score=34.37 Aligned_cols=108 Identities=15% Similarity=0.077 Sum_probs=60.4
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHh-------hhC----CHHHHHHHHHHHHHHHHhcCC
Q 026767 15 AAALAKELHNWREVADFYRKASELYNECGRSQPASDALAKAARAL-------EDA----VPEDAIQLYTDACIMLEEDDK 83 (233)
Q Consensus 15 ~g~~~~~~g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~-------~~g----~~~~A~~~~~~Al~~~~~~g~ 83 (233)
.|.+|...|...+|+.+|.+|+.-+ +..++|.++-.-. .+| ....|++||.+++.++++.+.
T Consensus 926 lg~~yl~tge~~kAl~cF~~a~Sg~-------ge~~aL~~lv~~~~p~~~sv~dG~t~s~e~t~lhYYlkv~rlle~hn~ 998 (1480)
T KOG4521|consen 926 LGIAYLGTGEPVKALNCFQSALSGF-------GEGNALRKLVYFLLPKRFSVADGKTPSEELTALHYYLKVVRLLEEHNH 998 (1480)
T ss_pred hheeeecCCchHHHHHHHHHHhhcc-------ccHHHHHHHHHHhcCCCCchhcCCCCCchHHHHHHHHHHHHHHHHhcc
Confidence 4555667788889999998887654 2333444443331 123 234578888888888887653
Q ss_pred hHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHccCcchHHHhHHHHHHHHHhhCCHHHHHHHH
Q 026767 84 EQMAFDLYRAATNVYIKLEKYADAATFLLRWGLAADKCNATNSQCKAYLSAIIVYLYANDFKQAEKCY 151 (233)
Q Consensus 84 ~~~~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~gd~~~A~~~~ 151 (233)
.. .++++...|++.... +.+..+..+..+-.-++.+|.+.+|.+.+
T Consensus 999 ~E--------------------~vcQlA~~AIe~l~d--d~ps~a~~~t~vFnhhldlgh~~qAy~ai 1044 (1480)
T KOG4521|consen 999 AE--------------------EVCQLAVKAIENLPD--DNPSVALISTTVFNHHLDLGHWFQAYKAI 1044 (1480)
T ss_pred HH--------------------HHHHHHHHHHHhCCC--cchhHHHHHHHHHHhhhchhhHHHHHHHH
Confidence 32 333333344432211 22334444455555666666666655443
No 360
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=82.84 E-value=34 Score=30.39 Aligned_cols=123 Identities=9% Similarity=-0.001 Sum_probs=78.3
Q ss_pred HHHhh-hCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHccCcchHHHhHHHH
Q 026767 56 ARALE-DAVPEDAIQLYTDACIMLEEDDKEQMAFDLYRAATNVYIKLEKYADAATFLLRWGLAADKCNATNSQCKAYLSA 134 (233)
Q Consensus 56 g~~~~-~g~~~~A~~~~~~Al~~~~~~g~~~~~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~l 134 (233)
|.+-. .||-..|.+.-.++-.+......+ .+..--+..-.--|+|+.|..-|+-.+. ++...---+..|
T Consensus 91 GliAagAGda~lARkmt~~~~~llssDqep----LIhlLeAQaal~eG~~~~Ar~kfeAMl~------dPEtRllGLRgL 160 (531)
T COG3898 91 GLIAAGAGDASLARKMTARASKLLSSDQEP----LIHLLEAQAALLEGDYEDARKKFEAMLD------DPETRLLGLRGL 160 (531)
T ss_pred hhhhhccCchHHHHHHHHHHHhhhhccchH----HHHHHHHHHHHhcCchHHHHHHHHHHhc------ChHHHHHhHHHH
Confidence 44555 589999999999988777665432 1222234444557999999999987663 222221122334
Q ss_pred HHHHHhhCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHHhcCCHHHHHHHHhhc
Q 026767 135 IIVYLYANDFKQAEKCYNDCSQVDAFLRSDQNRCATKLISAYTEGDVEEIKRVAQSS 191 (233)
Q Consensus 135 g~~~~~~gd~~~A~~~~~~al~~~~~~~~~e~~~l~~L~~a~~~gd~~~a~~~~~~~ 191 (233)
-+--.+.|+.+.|+.|-+++........+--...|. ..++.||.+.+...+...
T Consensus 161 yleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe---~r~~~gdWd~AlkLvd~~ 214 (531)
T COG3898 161 YLEAQRLGAREAARHYAERAAEKAPQLPWAARATLE---ARCAAGDWDGALKLVDAQ 214 (531)
T ss_pred HHHHHhcccHHHHHHHHHHHHhhccCCchHHHHHHH---HHHhcCChHHHHHHHHHH
Confidence 444456799999999999987544333332222222 234789999999888876
No 361
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=82.51 E-value=3.5 Score=35.18 Aligned_cols=67 Identities=16% Similarity=0.118 Sum_probs=51.9
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHh
Q 026767 7 DAAKHMESAAALAKELHNWREVADFYRKASELYNECGRSQPASDALAKAARALE-DAVPEDAIQLYTDACIMLEE 80 (233)
Q Consensus 7 ~~a~~~~~~g~~~~~~g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~ 80 (233)
.+.-++..++.+++ .|..++|...|+-|+.+.- .--.++..+|...+ ..+.-+|-++|-+|+.+.+.
T Consensus 115 EA~~Al~~A~~~~~-~Gk~ekA~~lfeHAlalaP------~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~ 182 (472)
T KOG3824|consen 115 EAILALKAAGRSRK-DGKLEKAMTLFEHALALAP------TNPQILIEMGQFREMHNEIVEADQCYVKALTISPG 182 (472)
T ss_pred HHHHHHHHHHHHHh-ccchHHHHHHHHHHHhcCC------CCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCC
Confidence 44556666777776 7899999999999988742 34567888999988 68888999999999877653
No 362
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=81.80 E-value=32 Score=29.32 Aligned_cols=126 Identities=12% Similarity=-0.030 Sum_probs=85.8
Q ss_pred HHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhcc
Q 026767 25 WREVADFYRKASELYNECGRSQPASDALAKAARALE-DAVPEDAIQLYTDACIMLEEDDKEQMAFDLYRAATNVYIKLEK 103 (233)
Q Consensus 25 ~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~~~~~~~~l~~lg~~~~~~g~ 103 (233)
.++-++-+.++++-.++.+--...+.++.|+|..|. -++.+.+.++..+.+.-.-..|-......|-..+|.+|..+.=
T Consensus 91 neeki~Elde~i~~~eedngE~e~~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d~~v 170 (412)
T COG5187 91 NEEKIEELDERIREKEEDNGETEGSEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIYGDRKV 170 (412)
T ss_pred hHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHhhccHHH
Confidence 345566666666655555545578899999999999 5999999999999998888888766666677888888866655
Q ss_pred HHHHHHHHHHHHHHHhHccC--cchHHHhHHHHHHHHHhhCCHHHHHHHHHHhh
Q 026767 104 YADAATFLLRWGLAADKCNA--TNSQCKAYLSAIIVYLYANDFKQAEKCYNDCS 155 (233)
Q Consensus 104 ~~~A~~~~~~al~~~~~~~~--~~~~a~~~~~lg~~~~~~gd~~~A~~~~~~al 155 (233)
..+.++... .+.++-|+ +++.-++|. |.-....-++.+|-..+..++
T Consensus 171 V~e~lE~~~---~~iEkGgDWeRrNRyK~Y~--Gi~~m~~RnFkeAa~Ll~d~l 219 (412)
T COG5187 171 VEESLEVAD---DIIEKGGDWERRNRYKVYK--GIFKMMRRNFKEAAILLSDIL 219 (412)
T ss_pred HHHHHHHHH---HHHHhCCCHHhhhhHHHHH--HHHHHHHHhhHHHHHHHHHHh
Confidence 555555444 33344332 233344444 344444457888888777765
No 363
>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
Probab=81.77 E-value=4.6 Score=26.56 Aligned_cols=22 Identities=9% Similarity=-0.139 Sum_probs=15.8
Q ss_pred HHhccHHHHHHHHHHHHHHHhH
Q 026767 99 IKLEKYADAATFLLRWGLAADK 120 (233)
Q Consensus 99 ~~~g~~~~A~~~~~~al~~~~~ 120 (233)
-..|+|.+|+.+|.++++.+..
T Consensus 17 D~~g~y~eA~~~Y~~aie~l~~ 38 (75)
T cd02678 17 DNAGNYEEALRLYQHALEYFMH 38 (75)
T ss_pred HHcCCHHHHHHHHHHHHHHHHH
Confidence 3467777788877777777654
No 364
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=81.72 E-value=7 Score=33.08 Aligned_cols=61 Identities=15% Similarity=0.046 Sum_probs=47.7
Q ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHccCcchHHHhHHHHHHHHHhhCCHHHHHHHHHHhh
Q 026767 89 DLYRAATNVYIKLEKYADAATFLLRWGLAADKCNATNSQCKAYLSAIIVYLYANDFKQAEKCYNDCS 155 (233)
Q Consensus 89 ~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~gd~~~A~~~~~~al 155 (233)
..+...+..|.+.|.+.+|+++.++++.+- +-.-..+..+..++..+||--.|.+.|++..
T Consensus 280 kllgkva~~yle~g~~neAi~l~qr~ltld------pL~e~~nk~lm~~la~~gD~is~~khyerya 340 (361)
T COG3947 280 KLLGKVARAYLEAGKPNEAIQLHQRALTLD------PLSEQDNKGLMASLATLGDEISAIKHYERYA 340 (361)
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHhhcC------hhhhHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence 345566777889999999999999999762 2223456777888889999999999998864
No 365
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=81.66 E-value=3.1 Score=35.48 Aligned_cols=65 Identities=17% Similarity=0.133 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHhhhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Q 026767 48 ASDALAKAARALEDAVPEDAIQLYTDACIMLEEDDKEQMAFDLYRAATNVYIKLEKYADAATFLLRWGLAA 118 (233)
Q Consensus 48 ~a~~l~~lg~~~~~g~~~~A~~~~~~Al~~~~~~g~~~~~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~ 118 (233)
+.-+++.++..+.+|..++|...|+.|+.+.+... +++..+|.+.-...+.-+|=.+|.+|+.+.
T Consensus 116 A~~Al~~A~~~~~~Gk~ekA~~lfeHAlalaP~~p------~~L~e~G~f~E~~~~iv~ADq~Y~~ALtis 180 (472)
T KOG3824|consen 116 AILALKAAGRSRKDGKLEKAMTLFEHALALAPTNP------QILIEMGQFREMHNEIVEADQCYVKALTIS 180 (472)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHHhcCCCCH------HHHHHHhHHHHhhhhhHhhhhhhheeeeeC
Confidence 44456666777778999999999999999987543 588899999988899999999999998753
No 366
>KOG2561 consensus Adaptor protein NUB1, contains UBA domain [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=81.62 E-value=13 Score=33.14 Aligned_cols=105 Identities=15% Similarity=0.056 Sum_probs=62.4
Q ss_pred HHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCChHHHH-----HHHHHHHHHHHHhcc----------HHHHHHHHHHH
Q 026767 51 ALAKAARALE-DAVPEDAIQLYTDACIMLEEDDKEQMAF-----DLYRAATNVYIKLEK----------YADAATFLLRW 114 (233)
Q Consensus 51 ~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~~~~~~-----~~l~~lg~~~~~~g~----------~~~A~~~~~~a 114 (233)
.+..-|.+.. ...|++|+..+-.|=+.|...+..-... ..-..+.++|..+.+ ...|...|.++
T Consensus 165 g~hekaRa~m~re~y~eAl~~LleADe~F~~Cd~klLe~VDNyallnLDIVWCYfrLknitcL~DAe~RL~ra~kgf~~s 244 (568)
T KOG2561|consen 165 GLHEKARAAMEREMYSEALLVLLEADESFSLCDSKLLELVDNYALLNLDIVWCYFRLKNITCLPDAEVRLVRARKGFERS 244 (568)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhHHHHHhhcchhhhhcchhheehhhcccccCChHHHHHHHHHHhhhhh
Confidence 3444455666 5789999999999888888776432211 122344556665542 33333333332
Q ss_pred H-----HHH-hHccCcchH---HHhHHHHHHHHHhhCCHHHHHHHHHHhh
Q 026767 115 G-----LAA-DKCNATNSQ---CKAYLSAIIVYLYANDFKQAEKCYNDCS 155 (233)
Q Consensus 115 l-----~~~-~~~~~~~~~---a~~~~~lg~~~~~~gd~~~A~~~~~~al 155 (233)
- .++ .+-+.-+.. -+.++--|.+.+++|.-++|.++++.+.
T Consensus 245 yGenl~Rl~~lKg~~spEraL~lRL~LLQGV~~yHqg~~deAye~le~a~ 294 (568)
T KOG2561|consen 245 YGENLSRLRSLKGGQSPERALILRLELLQGVVAYHQGQRDEAYEALESAH 294 (568)
T ss_pred hhhhhHhhhhccCCCChhHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHH
Confidence 1 010 011222222 2445677999999999999999999886
No 367
>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.
Probab=81.27 E-value=6 Score=26.16 Aligned_cols=20 Identities=20% Similarity=0.282 Sum_probs=13.0
Q ss_pred hCCHHHHHHHHHHHHHHHHh
Q 026767 61 DAVPEDAIQLYTDACIMLEE 80 (233)
Q Consensus 61 ~g~~~~A~~~~~~Al~~~~~ 80 (233)
.|+|++|..+|..+++.|..
T Consensus 19 ~~~y~eA~~~Y~~~i~~~~~ 38 (75)
T cd02677 19 EGDYEAAFEFYRAGVDLLLK 38 (75)
T ss_pred HhhHHHHHHHHHHHHHHHHH
Confidence 36666666666666666654
No 368
>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.
Probab=80.72 E-value=4.7 Score=26.68 Aligned_cols=21 Identities=19% Similarity=-0.072 Sum_probs=16.9
Q ss_pred HhccHHHHHHHHHHHHHHHhH
Q 026767 100 KLEKYADAATFLLRWGLAADK 120 (233)
Q Consensus 100 ~~g~~~~A~~~~~~al~~~~~ 120 (233)
..|+|.+|..+|..++..+..
T Consensus 18 ~~~~y~eA~~~Y~~~i~~~~~ 38 (75)
T cd02677 18 EEGDYEAAFEFYRAGVDLLLK 38 (75)
T ss_pred HHhhHHHHHHHHHHHHHHHHH
Confidence 348888888888888888765
No 369
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=80.52 E-value=1.9 Score=38.51 Aligned_cols=97 Identities=19% Similarity=0.064 Sum_probs=73.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCChHHH
Q 026767 9 AKHMESAAALAKELHNWREVADFYRKASELYNECGRSQPASDALAKAARALE-DAVPEDAIQLYTDACIMLEEDDKEQMA 87 (233)
Q Consensus 9 a~~~~~~g~~~~~~g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~~~~~ 87 (233)
|+-+-+=++-+...++|+.|+..|.+|+++-. ..|..+.+-+..+. .+++..|+.-..+|+++-+. -
T Consensus 4 a~e~k~ean~~l~~~~fd~avdlysKaI~ldp------nca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~------~ 71 (476)
T KOG0376|consen 4 AEELKNEANEALKDKVFDVAVDLYSKAIELDP------NCAIYFANRALAHLKVESFGGALHDALKAIELDPT------Y 71 (476)
T ss_pred hhhhhhHHhhhcccchHHHHHHHHHHHHhcCC------cceeeechhhhhheeechhhhHHHHHHhhhhcCch------h
Confidence 34444555555667899999999999999842 23444555555666 69999999999999988743 2
Q ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Q 026767 88 FDLYRAATNVYIKLEKYADAATFLLRWGLA 117 (233)
Q Consensus 88 ~~~l~~lg~~~~~~g~~~~A~~~~~~al~~ 117 (233)
..++..-|..+..++++.+|...|+....+
T Consensus 72 ~K~Y~rrg~a~m~l~~~~~A~~~l~~~~~l 101 (476)
T KOG0376|consen 72 IKAYVRRGTAVMALGEFKKALLDLEKVKKL 101 (476)
T ss_pred hheeeeccHHHHhHHHHHHHHHHHHHhhhc
Confidence 467888888899999999999999988765
No 370
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=79.70 E-value=36 Score=28.74 Aligned_cols=111 Identities=10% Similarity=0.027 Sum_probs=79.7
Q ss_pred chHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH-HHhHc-
Q 026767 45 SQPASDALAKAARALE-DAVPEDAIQLYTDACIMLEEDDKEQMAFDLYRAATNVYIKLEKYADAATFLLRWGL-AADKC- 121 (233)
Q Consensus 45 ~~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~~~~~~~~l~~lg~~~~~~g~~~~A~~~~~~al~-~~~~~- 121 (233)
+...+.++.+.+.+.. .|.++.|...+.++.......... ...+....+.++-..|+..+|+..++..+. .....
T Consensus 142 ~~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~--~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~ 219 (352)
T PF02259_consen 142 PEELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESL--LPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNI 219 (352)
T ss_pred hhHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCC--CcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcc
Confidence 6677788888888888 799999999888887766443321 123556677888889999999999988887 22211
Q ss_pred --------------------------cCcchHHHhHHHHHHHHHhh------CCHHHHHHHHHHhhcC
Q 026767 122 --------------------------NATNSQCKAYLSAIIVYLYA------NDFKQAEKCYNDCSQV 157 (233)
Q Consensus 122 --------------------------~~~~~~a~~~~~lg~~~~~~------gd~~~A~~~~~~al~~ 157 (233)
......++++..+|.-.... ++++.+.+.|.++...
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~ 287 (352)
T PF02259_consen 220 DSISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKL 287 (352)
T ss_pred ccccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHh
Confidence 11234566677777777666 7888888888888744
No 371
>cd02656 MIT MIT: domain contained within Microtubule Interacting and Trafficking molecules. The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar sorting proteins and others. The molecular function of the MIT domain is unclear.
Probab=79.65 E-value=5.7 Score=25.98 Aligned_cols=21 Identities=10% Similarity=-0.137 Sum_probs=14.8
Q ss_pred HhccHHHHHHHHHHHHHHHhH
Q 026767 100 KLEKYADAATFLLRWGLAADK 120 (233)
Q Consensus 100 ~~g~~~~A~~~~~~al~~~~~ 120 (233)
..|+|++|+.+|..+++.+..
T Consensus 18 ~~g~~~~Al~~Y~~a~e~l~~ 38 (75)
T cd02656 18 EDGNYEEALELYKEALDYLLQ 38 (75)
T ss_pred HcCCHHHHHHHHHHHHHHHHH
Confidence 347777777777777776655
No 372
>cd09240 BRO1_Alix Protein-interacting, N-terminal, Bro1-like domain of mammalian Alix and related domains. This family contains the N-terminal, Bro1-like domain of mammalian Alix (apoptosis-linked gene-2 interacting protein X), also called apoptosis-linked gene-2 interacting protein 1 (AIP1). It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, HD-PTP, Brox, Bro1, Rim20, and Rim23, interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Alix participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also f
Probab=78.84 E-value=38 Score=29.35 Aligned_cols=37 Identities=16% Similarity=0.346 Sum_probs=27.1
Q ss_pred hHHHHHHHHHHHHHHHHcCC---------HHHHHHHHHHHHHHHHH
Q 026767 5 PWDAAKHMESAAALAKELHN---------WREVADFYRKASELYNE 41 (233)
Q Consensus 5 ~~~~a~~~~~~g~~~~~~g~---------~~eA~~~~~~A~~l~~~ 41 (233)
.|..+..+.|+|.++.+.+- ..+|..+|++|.-+|.-
T Consensus 115 ~fEka~vlfNiaal~s~la~~~~~~~~eglK~A~~~fq~AAG~F~~ 160 (346)
T cd09240 115 GYEKVCVLFNIAALQSQIAAEQNLDTDEGLKLAAKLFQQAAGIFNH 160 (346)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHH
Confidence 56777888888887754332 47788899999888753
No 373
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=78.82 E-value=16 Score=24.16 Aligned_cols=24 Identities=33% Similarity=0.481 Sum_probs=19.6
Q ss_pred hCCHHHHHHHHHHHHHHHHhcCCh
Q 026767 61 DAVPEDAIQLYTDACIMLEEDDKE 84 (233)
Q Consensus 61 ~g~~~~A~~~~~~Al~~~~~~g~~ 84 (233)
.|++++|+++|..|+++|....++
T Consensus 19 ~gny~eA~~lY~~ale~~~~ekn~ 42 (75)
T cd02680 19 KGNAEEAIELYTEAVELCINTSNE 42 (75)
T ss_pred hhhHHHHHHHHHHHHHHHHHhcCh
Confidence 388999999999999998875443
No 374
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=78.45 E-value=26 Score=26.26 Aligned_cols=81 Identities=4% Similarity=-0.041 Sum_probs=57.1
Q ss_pred HHHHHHHHHHHHHhc---cHHHHHHHHHHHHHHHhHccCcchHHHhHHHHHHHHHhhCCHHHHHHHHHHhhcCCCCCCch
Q 026767 88 FDLYRAATNVYIKLE---KYADAATFLLRWGLAADKCNATNSQCKAYLSAIIVYLYANDFKQAEKCYNDCSQVDAFLRSD 164 (233)
Q Consensus 88 ~~~l~~lg~~~~~~g---~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~gd~~~A~~~~~~al~~~~~~~~~ 164 (233)
..+..++++++++.. +..+.+.+++..+. .. .+...-.+.+-|+.-|.+.++|+.++++....++.. .++.
T Consensus 32 ~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~--~~--~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e--~~n~ 105 (149)
T KOG3364|consen 32 KQSQFNLAWALVRSRDTEDVQEGIVILEDLLK--SA--HPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETE--PNNR 105 (149)
T ss_pred HHHHHHHHHHHHcccchHHHHHhHHHHHHHhh--hc--CcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhC--CCcH
Confidence 368899999998765 56678888887664 12 222233456778888889999999999999987443 2345
Q ss_pred HHHHHHHHHH
Q 026767 165 QNRCATKLIS 174 (233)
Q Consensus 165 e~~~l~~L~~ 174 (233)
++..|...++
T Consensus 106 Qa~~Lk~~ie 115 (149)
T KOG3364|consen 106 QALELKETIE 115 (149)
T ss_pred HHHHHHHHHH
Confidence 6766666654
No 375
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=78.39 E-value=4.1 Score=20.91 Aligned_cols=25 Identities=16% Similarity=0.319 Sum_probs=15.7
Q ss_pred HHHHHHHHHHhccHHHHHHHHHHHH
Q 026767 91 YRAATNVYIKLEKYADAATFLLRWG 115 (233)
Q Consensus 91 l~~lg~~~~~~g~~~~A~~~~~~al 115 (233)
++.+-..|.+.|++++|.+.|++..
T Consensus 3 y~~li~~~~~~~~~~~a~~~~~~M~ 27 (31)
T PF01535_consen 3 YNSLISGYCKMGQFEEALEVFDEMR 27 (31)
T ss_pred HHHHHHHHHccchHHHHHHHHHHHh
Confidence 4555666666666666666666543
No 376
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=76.44 E-value=6.1 Score=20.62 Aligned_cols=25 Identities=12% Similarity=0.112 Sum_probs=16.3
Q ss_pred HHHHHHHHHHhccHHHHHHHHHHHH
Q 026767 91 YRAATNVYIKLEKYADAATFLLRWG 115 (233)
Q Consensus 91 l~~lg~~~~~~g~~~~A~~~~~~al 115 (233)
++.+-..|.+.|++++|.++|.+..
T Consensus 3 ~n~li~~~~~~~~~~~a~~~~~~M~ 27 (35)
T TIGR00756 3 YNTLIDGLCKAGRVEEALELFKEML 27 (35)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 4555666677777777777776654
No 377
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=76.29 E-value=43 Score=27.72 Aligned_cols=136 Identities=12% Similarity=-0.018 Sum_probs=92.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh-h-----CCH---HHHHHHHHHHHHHHHh
Q 026767 10 KHMESAAALAKELHNWREVADFYRKASELYNECGRSQPASDALAKAARALE-D-----AVP---EDAIQLYTDACIMLEE 80 (233)
Q Consensus 10 ~~~~~~g~~~~~~g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~-~-----g~~---~~A~~~~~~Al~~~~~ 80 (233)
++...++-++...+++++|+.+.++=+.+|- ....+.-++.-.|.++. . .|. .+|+.-+..-+.-|+.
T Consensus 72 qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP---~~~n~dY~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPn 148 (254)
T COG4105 72 QAQLDLAYAYYKNGEYDLALAYIDRFIRLYP---THPNADYAYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPN 148 (254)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHhCC---CCCChhHHHHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCC
Confidence 4555667777789999999999999888874 34445555555555544 2 233 3455556666655555
Q ss_pred cCCh-----------HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHccCcchHHHhHHHHHHHHHhhCCHHHHHH
Q 026767 81 DDKE-----------QMAFDLYRAATNVYIKLEKYADAATFLLRWGLAADKCNATNSQCKAYLSAIIVYLYANDFKQAEK 149 (233)
Q Consensus 81 ~g~~-----------~~~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~gd~~~A~~ 149 (233)
..-. ...+.-=..+|..|.+.|.|-.|+-.+++.++-+. ++...-.++..+...|..+|-.++|.+
T Consensus 149 S~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~nR~~~v~e~y~---~t~~~~eaL~~l~eaY~~lgl~~~a~~ 225 (254)
T COG4105 149 SRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVAAINRFEEVLENYP---DTSAVREALARLEEAYYALGLTDEAKK 225 (254)
T ss_pred CcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHhccc---cccchHHHHHHHHHHHHHhCChHHHHH
Confidence 4411 11122234578899999999999999999887543 444555677888899999998888776
Q ss_pred HH
Q 026767 150 CY 151 (233)
Q Consensus 150 ~~ 151 (233)
.-
T Consensus 226 ~~ 227 (254)
T COG4105 226 TA 227 (254)
T ss_pred HH
Confidence 53
No 378
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=75.88 E-value=26 Score=35.19 Aligned_cols=64 Identities=19% Similarity=0.112 Sum_probs=33.2
Q ss_pred HHHHHHHhh-hCCHHHHHHHHHHHHHHH------HhcCChH-HHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Q 026767 52 LAKAARALE-DAVPEDAIQLYTDACIML------EEDDKEQ-MAFDLYRAATNVYIKLEKYADAATFLLRWG 115 (233)
Q Consensus 52 l~~lg~~~~-~g~~~~A~~~~~~Al~~~------~~~g~~~-~~~~~l~~lg~~~~~~g~~~~A~~~~~~al 115 (233)
+.++|.+|+ -|..++|+..|+.+..+- .+..... .....-..+..-+..++++-+|.+.....+
T Consensus 955 ~~~Aal~Ye~~GklekAl~a~~~~~dWr~~l~~a~ql~~~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~ 1026 (1265)
T KOG1920|consen 955 SDEAALMYERCGKLEKALKAYKECGDWREALSLAAQLSEGKDELVILAEELVSRLVEQRKHYEAAKILLEYL 1026 (1265)
T ss_pred ccHHHHHHHHhccHHHHHHHHHHhccHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHh
Confidence 445566666 577777777765544332 2211111 111112455555666777777766655544
No 379
>cd09241 BRO1_ScRim20-like Protein-interacting, N-terminal, Bro1-like domain of Saccharomyces cerevisiae Rim20 and related proteins. This family contains the N-terminal, Bro1-like domain of Saccharomyces cerevisiae Rim20 (also known as PalA) and related proteins. It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Brox, Saccharomyces cerevisiae Bro1, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, HD-PTP, Brox, Bro1, Rim20, and Rim23, interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Rim20 and Rim23 participate in the response to the external pH via the Rim101 pathway. Bro1-like domains are boomerang-shaped, and part of the domain is a tetratricopeptide repeat (TPR)-like structure. Bro1-like domains bind comp
Probab=75.88 E-value=27 Score=30.33 Aligned_cols=37 Identities=11% Similarity=0.308 Sum_probs=28.0
Q ss_pred hHHHHHHHHHHHHHHHHcC---------CHHHHHHHHHHHHHHHHH
Q 026767 5 PWDAAKHMESAAALAKELH---------NWREVADFYRKASELYNE 41 (233)
Q Consensus 5 ~~~~a~~~~~~g~~~~~~g---------~~~eA~~~~~~A~~l~~~ 41 (233)
.+..+..+.|+|.+|.+.+ ...+|..+|++|.-+|.-
T Consensus 102 ~fEka~VLfNigal~sq~a~~~~~~~~~glK~A~~~fq~AAG~F~~ 147 (355)
T cd09241 102 KFERANILYNLGALYSQLALSENRYTDEGLKRACSYFQASAGCFEY 147 (355)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHH
Confidence 4777888888888875432 367889999999888764
No 380
>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.
Probab=75.68 E-value=9.6 Score=25.15 Aligned_cols=20 Identities=20% Similarity=0.217 Sum_probs=14.5
Q ss_pred hCCHHHHHHHHHHHHHHHHh
Q 026767 61 DAVPEDAIQLYTDACIMLEE 80 (233)
Q Consensus 61 ~g~~~~A~~~~~~Al~~~~~ 80 (233)
.|++++|+.+|..|++.|..
T Consensus 19 ~g~y~eA~~lY~~ale~~~~ 38 (75)
T cd02684 19 RGDAAAALSLYCSALQYFVP 38 (75)
T ss_pred hccHHHHHHHHHHHHHHHHH
Confidence 37777777777777777664
No 381
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=75.48 E-value=5.6 Score=32.54 Aligned_cols=51 Identities=20% Similarity=0.052 Sum_probs=38.3
Q ss_pred hCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Q 026767 61 DAVPEDAIQLYTDACIMLEEDDKEQMAFDLYRAATNVYIKLEKYADAATFLLRWGLA 117 (233)
Q Consensus 61 ~g~~~~A~~~~~~Al~~~~~~g~~~~~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~ 117 (233)
.++.+.+.+.|.+|+++.++ ++ ..+.++|....+.|+.+.|...|++.+++
T Consensus 8 ~~D~~aaaely~qal~lap~-----w~-~gwfR~g~~~ekag~~daAa~a~~~~L~l 58 (287)
T COG4976 8 SGDAEAAAELYNQALELAPE-----WA-AGWFRLGEYTEKAGEFDAAAAAYEEVLEL 58 (287)
T ss_pred cCChHHHHHHHHHHhhcCch-----hh-hhhhhcchhhhhcccHHHHHHHHHHHHcC
Confidence 47788888888888887764 22 35677888888888888888888887764
No 382
>PF08238 Sel1: Sel1 repeat; InterPro: IPR006597 Sel1-like repeats are tetratricopeptide repeat sequences originally identified in a Caenorhabditis elegans receptor molecule which is a key negative regulator of the Notch pathway []. Mammalian homologues have since been identified although these mainly pancreatic proteins have yet to have a function assigned.; PDB: 2XM6_A 3RJV_A 1OUV_A 1KLX_A.
Probab=75.20 E-value=9.5 Score=20.82 Aligned_cols=13 Identities=31% Similarity=0.350 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHH
Q 026767 64 PEDAIQLYTDACI 76 (233)
Q Consensus 64 ~~~A~~~~~~Al~ 76 (233)
+++|+.||++|.+
T Consensus 24 ~~~A~~~~~~Aa~ 36 (39)
T PF08238_consen 24 YEKAFKWYEKAAE 36 (39)
T ss_dssp HHHHHHHHHHHHH
T ss_pred ccchHHHHHHHHH
Confidence 5667777776654
No 383
>cd09247 BRO1_Alix_like_2 Protein-interacting Bro1-like domain of an Uncharacterized family of the BRO1_Alix_like superfamily. This domain family is comprised of uncharacterized proteins. It belongs to the BRO1_Alix_like superfamily which includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, HD-PTP, Brox, Bro1, Rim20 and Rim23 interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Alix participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also functions in apoptosis. HD-PTP and Bro1 function in
Probab=74.52 E-value=57 Score=28.27 Aligned_cols=38 Identities=16% Similarity=0.231 Sum_probs=27.9
Q ss_pred ChHHHHHHHHHHHHHHHHcC-------CHHHHHHHHHHHHHHHHH
Q 026767 4 SPWDAAKHMESAAALAKELH-------NWREVADFYRKASELYNE 41 (233)
Q Consensus 4 ~~~~~a~~~~~~g~~~~~~g-------~~~eA~~~~~~A~~l~~~ 41 (233)
-.+..+.++.++|.++.+.+ ...+|..++++|.-+|.-
T Consensus 108 l~fE~~~vLfn~aa~~s~~A~~~~~~e~~K~A~~~l~~AAG~f~~ 152 (346)
T cd09247 108 LRFELGMVLFLYGAALRERASEVLPTEDFKEAATHLRRAAGVFEF 152 (346)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHH
Confidence 46777888888888775422 367888889998888754
No 384
>cd09034 BRO1_Alix_like Protein-interacting Bro1-like domain of mammalian Alix and related domains. This superfamily includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and Rhophilin-2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, and related domains. Alix, HD-PTP, Brox, Bro1 and Rim20 interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Alix, also known as apoptosis-linked gene-2 interacting protein 1 (AIP1), participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also functions in apoptosis. HD-PTP functions in cell migration and endosomal trafficking, Bro1 in endosomal trafficking, and Rim20 in the response to
Probab=74.35 E-value=55 Score=28.07 Aligned_cols=37 Identities=19% Similarity=0.281 Sum_probs=26.9
Q ss_pred hHHHHHHHHHHHHHHHHc----------CCHHHHHHHHHHHHHHHHH
Q 026767 5 PWDAAKHMESAAALAKEL----------HNWREVADFYRKASELYNE 41 (233)
Q Consensus 5 ~~~~a~~~~~~g~~~~~~----------g~~~eA~~~~~~A~~l~~~ 41 (233)
.+..+.++.|+|.+|..+ .....|..++++|.-+|.-
T Consensus 107 ~fE~~~vLfn~aa~~s~~a~~~~~~~~~~~~k~A~~~fq~AAG~F~~ 153 (345)
T cd09034 107 RYELLSILFNLAALASQLANEKLITGSEEDLKQAIKSLQKAAGYFEY 153 (345)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHH
Confidence 466777788888777532 3467888999999988764
No 385
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=73.68 E-value=63 Score=28.42 Aligned_cols=174 Identities=11% Similarity=0.037 Sum_probs=95.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh----hCCHHHHHHHHHHHHHHHHhcCChHHH
Q 026767 12 MESAAALAKELHNWREVADFYRKASELYNECGRSQPASDALAKAARALE----DAVPEDAIQLYTDACIMLEEDDKEQMA 87 (233)
Q Consensus 12 ~~~~g~~~~~~g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~----~g~~~~A~~~~~~Al~~~~~~g~~~~~ 87 (233)
..++=..|+...+|+.-+.+.+.--.+-... ....-.+-...|..+. .|+.++|++.+...+.--... .
T Consensus 144 v~~lllSyRdiqdydamI~Lve~l~~~p~~~--~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~-----~ 216 (374)
T PF13281_consen 144 VINLLLSYRDIQDYDAMIKLVETLEALPTCD--VANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENP-----D 216 (374)
T ss_pred HHHHHHHhhhhhhHHHHHHHHHHhhccCccc--hhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCC-----C
Confidence 3455566788888888888777665551100 1111222233344443 399999999998875432221 1
Q ss_pred HHHHHHHHHHHHH---------hccHHHHHHHHHHHHHHHhHccCcchHHHhHHHHHHHHHhhCCHHHHHHHHHHhh-cC
Q 026767 88 FDLYRAATNVYIK---------LEKYADAATFLLRWGLAADKCNATNSQCKAYLSAIIVYLYANDFKQAEKCYNDCS-QV 157 (233)
Q Consensus 88 ~~~l~~lg~~~~~---------~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~gd~~~A~~~~~~al-~~ 157 (233)
.+++.-+|.+|-. ....++|+..|.++-++- ++. ..-.|++.+....|.-.+.....++.. .+
T Consensus 217 ~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~---~~~----Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l 289 (374)
T PF13281_consen 217 PDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIE---PDY----YSGINAATLLMLAGHDFETSEELRKIGVKL 289 (374)
T ss_pred hHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCC---ccc----cchHHHHHHHHHcCCcccchHHHHHHHHHH
Confidence 2456666766542 335778888888777652 111 112455555555564333332222221 11
Q ss_pred ------CC-CCCchHHHHHHHHHHHH-hcCCHHHHHHHHhhcccccchHH
Q 026767 158 ------DA-FLRSDQNRCATKLISAY-TEGDVEEIKRVAQSSAISNLDHV 199 (233)
Q Consensus 158 ------~~-~~~~~e~~~l~~L~~a~-~~gd~~~a~~~~~~~~~~~ld~~ 199 (233)
.+ ...........-++++. -.||.+++..+.+++.--..+.|
T Consensus 290 ~~llg~kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~W 339 (374)
T PF13281_consen 290 SSLLGRKGSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPAW 339 (374)
T ss_pred HHHHHhhccccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcch
Confidence 11 12233344455566655 68999999999999832245566
No 386
>PF12487 DUF3703: Protein of unknown function (DUF3703) ; InterPro: IPR022172 This family of proteins is found in bacteria. Proteins in this family are typically between 113 and 135 amino acids in length.
Probab=73.19 E-value=18 Score=25.91 Aligned_cols=87 Identities=17% Similarity=0.079 Sum_probs=52.3
Q ss_pred HHHHHHHHhhCCHHHHHHHHHHhhcCCCCCCchHHHHHH-HHHHHHhcCCHHHHHHHHhhcccccchHHHHHHhccCCCC
Q 026767 132 LSAIIVYLYANDFKQAEKCYNDCSQVDAFLRSDQNRCAT-KLISAYTEGDVEEIKRVAQSSAISNLDHVIIKLARKLPTG 210 (233)
Q Consensus 132 ~~lg~~~~~~gd~~~A~~~~~~al~~~~~~~~~e~~~l~-~L~~a~~~gd~~~a~~~~~~~~~~~ld~~~~~l~~~l~~~ 210 (233)
+..+...+..|++..|..++|+|..+.......-..+-- .|.-+++.+|..++.--+ ++=+-.....+.+.+|.|
T Consensus 13 l~~a~~a~~~~~~~~aw~hLErAHIlgQ~~~~~H~~~H~~ML~~a~r~rd~rEv~GQ~----~Rl~~a~~gs~~G~~P~G 88 (112)
T PF12487_consen 13 LEAAREALAAGDLQQAWRHLERAHILGQPYPWLHTRVHWAMLRFALRQRDRREVLGQL----LRLIVAAPGSLVGRVPVG 88 (112)
T ss_pred HHHHHHHHHcCCHHHHHHHHHhhHHhcCCchhHHHHHHHHHHHHHHHccCHHHHHHHH----HHHHHHHHHHHhccCCCC
Confidence 344455566799999999999998554433222233222 333356778866554333 333334567777888999
Q ss_pred chhhhhhhhcCC
Q 026767 211 DVSALKKANAVQ 222 (233)
Q Consensus 211 ~~~~~~~~~~~~ 222 (233)
+++--+++.=+|
T Consensus 89 NtG~anV~~f~p 100 (112)
T PF12487_consen 89 NTGGANVSPFKP 100 (112)
T ss_pred CCCCCCCCCCCC
Confidence 888544444443
No 387
>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.
Probab=73.02 E-value=15 Score=24.16 Aligned_cols=34 Identities=12% Similarity=0.070 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 026767 8 AAKHMESAAALAKELHNWREVADFYRKASELYNE 41 (233)
Q Consensus 8 ~a~~~~~~g~~~~~~g~~~eA~~~~~~A~~l~~~ 41 (233)
.|..+..-|.-.-..|++++|+.+|.+|++.+..
T Consensus 5 ~Ai~lv~~Av~~D~~g~y~eA~~lY~~ale~~~~ 38 (75)
T cd02684 5 KAIALVVQAVKKDQRGDAAAALSLYCSALQYFVP 38 (75)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHH
Confidence 4445555566667789999999999999998854
No 388
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=72.91 E-value=56 Score=27.50 Aligned_cols=61 Identities=16% Similarity=0.120 Sum_probs=50.7
Q ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHccCcchHHHhHHHHHHHHHhhCCHHHHHHHHHHhh
Q 026767 89 DLYRAATNVYIKLEKYADAATFLLRWGLAADKCNATNSQCKAYLSAIIVYLYANDFKQAEKCYNDCS 155 (233)
Q Consensus 89 ~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~gd~~~A~~~~~~al 155 (233)
.++..++..+...|+++.++..+++.+++ .+..-..+..+...|...|+...|+..|++..
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~------dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~ 214 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIEL------DPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLK 214 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhc------CccchHHHHHHHHHHHHcCCchHHHHHHHHHH
Confidence 57888899999999999999999988865 22333467888899999999999999998875
No 389
>PF13041 PPR_2: PPR repeat family
Probab=72.84 E-value=17 Score=21.35 Aligned_cols=26 Identities=19% Similarity=0.304 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHhccHHHHHHHHHHHH
Q 026767 90 LYRAATNVYIKLEKYADAATFLLRWG 115 (233)
Q Consensus 90 ~l~~lg~~~~~~g~~~~A~~~~~~al 115 (233)
+++.+-..+.+.|++++|.++|++..
T Consensus 5 ~yn~li~~~~~~~~~~~a~~l~~~M~ 30 (50)
T PF13041_consen 5 TYNTLISGYCKAGKFEEALKLFKEMK 30 (50)
T ss_pred HHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 56677777778888888888887766
No 390
>COG5091 SGT1 Suppressor of G2 allele of skp1 and related proteins [General function prediction only]
Probab=72.54 E-value=17 Score=30.39 Aligned_cols=80 Identities=11% Similarity=-0.085 Sum_probs=64.7
Q ss_pred CCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHh
Q 026767 23 HNWREVADFYRKASELYNECGRSQPASDALAKAARALE-DAVPEDAIQLYTDACIMLEEDDKEQMAFDLYRAATNVYIKL 101 (233)
Q Consensus 23 g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~~~~~~~~l~~lg~~~~~~ 101 (233)
-...-|.++..+|+.+.+..||....+.+-..-+..|. ..+|+-|.-||.+|..++....-+.+....-..+-.+.-++
T Consensus 53 ~~~~n~~e~~d~ALm~Ae~r~D~~~IG~~~~~~~v~~~~ik~Ye~a~~~F~~A~~~~~~d~L~~We~rLet~L~~~~kkQ 132 (368)
T COG5091 53 ATMENAKELLDKALMTAEGRGDRSKIGLVNFRYFVHFFNIKDYELAQSYFKKAKNLYVDDTLPLWEDRLETKLNKKNKKQ 132 (368)
T ss_pred cChhhHHHHHHHHHHhhhccCCcceeeeehhhhHHHhhhHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHhHhhHhh
Confidence 34678999999999999999999988888888888888 69999999999999999998886666554444555555444
Q ss_pred c
Q 026767 102 E 102 (233)
Q Consensus 102 g 102 (233)
.
T Consensus 133 ~ 133 (368)
T COG5091 133 K 133 (368)
T ss_pred c
Confidence 3
No 391
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=72.19 E-value=49 Score=32.29 Aligned_cols=55 Identities=15% Similarity=0.053 Sum_probs=28.5
Q ss_pred HHHHHHhccHHHHHHHHHHHHHHHhHccCcchHHHhHHHHHHHHHhhCCHHHHHHHHHHhh
Q 026767 95 TNVYIKLEKYADAATFLLRWGLAADKCNATNSQCKAYLSAIIVYLYANDFKQAEKCYNDCS 155 (233)
Q Consensus 95 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~gd~~~A~~~~~~al 155 (233)
|.++.++|++++|..+++ ++... ...--.++..+-.||..+|.+++|..+|++++
T Consensus 50 aLsl~r~gk~~ea~~~Le-~~~~~-----~~~D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~ 104 (932)
T KOG2053|consen 50 ALSLFRLGKGDEALKLLE-ALYGL-----KGTDDLTLQFLQNVYRDLGKLDEAVHLYERAN 104 (932)
T ss_pred HHHHHHhcCchhHHHHHh-hhccC-----CCCchHHHHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 444556666666664444 22211 11122344555666666666666666666665
No 392
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=72.04 E-value=22 Score=34.33 Aligned_cols=48 Identities=13% Similarity=0.095 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHhcC-ChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Q 026767 69 QLYTDACIMLEEDD-KEQMAFDLYRAATNVYIKLEKYADAATFLLRWGL 116 (233)
Q Consensus 69 ~~~~~Al~~~~~~g-~~~~~~~~l~~lg~~~~~~g~~~~A~~~~~~al~ 116 (233)
..|.-|+.+....+ +....+.++..+|..+.+.|++++|...|-+.+.
T Consensus 348 ~ly~~Ai~LAk~~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~ 396 (933)
T KOG2114|consen 348 NLYKVAINLAKSQHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIG 396 (933)
T ss_pred hhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcc
Confidence 46777888888877 5666778999999999999999999999998763
No 393
>cd09239 BRO1_HD-PTP_like Protein-interacting, N-terminal, Bro1-like domain of mammalian His-Domain type N23 protein tyrosine phosphatase and related domains. This family contains the N-terminal, Bro1-like domain of mammalian His-Domain type N23 protein tyrosine phosphatase (HD-PTP) and related domains. It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), RhoA-binding proteins Rhophilin-1 and -2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, also known as apoptosis-linked gene-2 interacting protein 1 (AIP1), HD-PTP, Brox, Bro1, Rim20, and Rim23, interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. HD-PTP participates in cell migration and endosomal trafficking. Bro1-like domains are boomerang-shaped, and part of the domain is a tetratricopeptide repeat (TPR)-l
Probab=71.44 E-value=63 Score=28.24 Aligned_cols=37 Identities=14% Similarity=0.196 Sum_probs=27.3
Q ss_pred hHHHHHHHHHHHHHHHHcC---------CHHHHHHHHHHHHHHHHH
Q 026767 5 PWDAAKHMESAAALAKELH---------NWREVADFYRKASELYNE 41 (233)
Q Consensus 5 ~~~~a~~~~~~g~~~~~~g---------~~~eA~~~~~~A~~l~~~ 41 (233)
.+..+..+.|+|-+|.+.+ ...+|..+|++|.-.|.-
T Consensus 110 ~fEka~vlfNigal~sq~a~~~~r~~~~glK~A~~~fq~AAG~F~~ 155 (361)
T cd09239 110 KFEEASVLYNIGALHSQLGASDKRDSEEGMKVACTHFQCAAWAFAY 155 (361)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHH
Confidence 5677888888888886433 256788888888888753
No 394
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=70.22 E-value=13 Score=19.41 Aligned_cols=26 Identities=15% Similarity=0.045 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHhccHHHHHHHHHHHH
Q 026767 90 LYRAATNVYIKLEKYADAATFLLRWG 115 (233)
Q Consensus 90 ~l~~lg~~~~~~g~~~~A~~~~~~al 115 (233)
+++.+-..+.+.|+++.|..+|.+..
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~ 28 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMK 28 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 46666777777777777777777654
No 395
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=70.22 E-value=32 Score=30.57 Aligned_cols=66 Identities=15% Similarity=0.080 Sum_probs=44.9
Q ss_pred HHHHhh-hCCHHHHHHHHHHH----HHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHcc
Q 026767 55 AARALE-DAVPEDAIQLYTDA----CIMLEEDDKEQMAFDLYRAATNVYIKLEKYADAATFLLRWGLAADKCN 122 (233)
Q Consensus 55 lg~~~~-~g~~~~A~~~~~~A----l~~~~~~g~~~~~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~ 122 (233)
+..++- .|||..|++..+-- -.+|..+... -..++..+|-.|..++||.+|+..|...+....+..
T Consensus 128 LlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~--~is~~YyvGFaylMlrRY~DAir~f~~iL~yi~r~k 198 (404)
T PF10255_consen 128 LLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPAC--HISTYYYVGFAYLMLRRYADAIRTFSQILLYIQRTK 198 (404)
T ss_pred HHHHHHhccCHHHHHHHhhccCcccchhhccCcch--heehHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 345566 59999988775421 0123222221 124788899999999999999999999987665544
No 396
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=70.17 E-value=11 Score=34.95 Aligned_cols=49 Identities=14% Similarity=0.133 Sum_probs=33.5
Q ss_pred HHHhccHHHHHHHHHHHHHHHhHccCcchHHHhHHHHHHHHHhhCCHHHHHHHHHHhhcC
Q 026767 98 YIKLEKYADAATFLLRWGLAADKCNATNSQCKAYLSAIIVYLYANDFKQAEKCYNDCSQV 157 (233)
Q Consensus 98 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~gd~~~A~~~~~~al~~ 157 (233)
.+++|+++.|.++..++-.. .-+..||.+.+..|++..|.++|.++...
T Consensus 647 al~lgrl~iA~~la~e~~s~-----------~Kw~~Lg~~al~~~~l~lA~EC~~~a~d~ 695 (794)
T KOG0276|consen 647 ALKLGRLDIAFDLAVEANSE-----------VKWRQLGDAALSAGELPLASECFLRARDL 695 (794)
T ss_pred hhhcCcHHHHHHHHHhhcch-----------HHHHHHHHHHhhcccchhHHHHHHhhcch
Confidence 34677777777765544321 13567888888888888888888888643
No 397
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=69.69 E-value=89 Score=28.78 Aligned_cols=115 Identities=15% Similarity=-0.009 Sum_probs=73.5
Q ss_pred HHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHH
Q 026767 30 DFYRKASELYNECGRSQPASDALAKAARALEDAVPEDAIQLYTDACIMLEEDDKEQMAFDLYRAATNVYIKLEKYADAAT 109 (233)
Q Consensus 30 ~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~~g~~~~A~~~~~~Al~~~~~~g~~~~~~~~l~~lg~~~~~~g~~~~A~~ 109 (233)
....+++..++.. -|.++.+.+...+.+...|+.+.|+..++.+++ -+ .+.....|+..+|.+++-+.+|.+|..
T Consensus 250 ~~~~~~Ll~~~~~-~p~ga~wll~~ar~l~~~g~~eaa~~~~~~~v~-~~---~kQ~~~l~~fE~aw~~v~~~~~~~aad 324 (546)
T KOG3783|consen 250 EECEKALKKYRKR-YPKGALWLLMEARILSIKGNSEAAIDMESLSIP-IR---MKQVKSLMVFERAWLSVGQHQYSRAAD 324 (546)
T ss_pred HHHHHHhHHHHHh-CCCCccHHHHHHHHHHHcccHHHHHHHHHhccc-HH---HHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 3444444444433 355677777777766667778889999999988 11 222344688999999999999999999
Q ss_pred HHHHHHHHHhHccCcchHHHhHHHHHHHHHh--------hCCHHHHHHHHHHh
Q 026767 110 FLLRWGLAADKCNATNSQCKAYLSAIIVYLY--------ANDFKQAEKCYNDC 154 (233)
Q Consensus 110 ~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~--------~gd~~~A~~~~~~a 154 (233)
++...... ..|+.+.--+-.|.|++. .|+-+.|..+++..
T Consensus 325 ~~~~L~de-----sdWS~a~Y~Yfa~cc~l~~~~~~q~~~~ne~~a~~~~k~~ 372 (546)
T KOG3783|consen 325 SFDLLRDE-----SDWSHAFYTYFAGCCLLQNWEVNQGAGGNEEKAQLYFKVG 372 (546)
T ss_pred HHHHHHhh-----hhhhHHHHHHHHHHHHhccHHHHHhcccchhHHHHHHHHH
Confidence 98876654 345554322444444443 34555555555443
No 398
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=68.68 E-value=48 Score=29.99 Aligned_cols=52 Identities=10% Similarity=0.056 Sum_probs=31.5
Q ss_pred HHHHHhccHHHHHHHHHHHHHHHhHccCcchHHHhHHHHHHHHHhhCCHHHHHHHHHHh
Q 026767 96 NVYIKLEKYADAATFLLRWGLAADKCNATNSQCKAYLSAIIVYLYANDFKQAEKCYNDC 154 (233)
Q Consensus 96 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~gd~~~A~~~~~~a 154 (233)
..+...|+|+++.-+..-...+. + -..+|.-+|.|.....+|.+|+.++...
T Consensus 470 EyLysqgey~kc~~ys~WL~~ia-----P--S~~~~RLlGl~l~e~k~Y~eA~~~l~~L 521 (549)
T PF07079_consen 470 EYLYSQGEYHKCYLYSSWLTKIA-----P--SPQAYRLLGLCLMENKRYQEAWEYLQKL 521 (549)
T ss_pred HHHHhcccHHHHHHHHHHHHHhC-----C--cHHHHHHHHHHHHHHhhHHHHHHHHHhC
Confidence 34445677777666655544431 1 2345666777777777777777777665
No 399
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=68.30 E-value=32 Score=22.77 Aligned_cols=34 Identities=26% Similarity=0.246 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc
Q 026767 9 AKHMESAAALAKELHNWREVADFYRKASELYNEC 42 (233)
Q Consensus 9 a~~~~~~g~~~~~~g~~~eA~~~~~~A~~l~~~~ 42 (233)
|..+..=|.---..|++++|+++|..|++.|...
T Consensus 6 ai~Lv~~A~~eD~~gny~eA~~lY~~ale~~~~e 39 (75)
T cd02680 6 AHFLVTQAFDEDEKGNAEEAIELYTEAVELCINT 39 (75)
T ss_pred HHHHHHHHHHhhHhhhHHHHHHHHHHHHHHHHHh
Confidence 3344444455556899999999999999999773
No 400
>cd09242 BRO1_ScBro1_like Protein-interacting, N-terminal, Bro1-like domain of Saccharomyces cerevisiae Bro1 and related proteins. This family contains the N-terminal, Bro1-like domain of Saccharomyces cerevisiae Bro1 and related proteins. It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Brox, Saccharomyces cerevisiae Rim20 (also known as PalA), Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, HD-PTP, Brox, Bro1, Rim20, and Rim23, interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Bro1 participates in endosomal trafficking. Bro1-like domains are boomerang-shaped, and part of the domain is a tetratricopeptide repeat (TPR)-like structure. Bro1-like domains bind components of the ESCRT-III complex: Snf7 in the
Probab=68.29 E-value=80 Score=27.38 Aligned_cols=37 Identities=16% Similarity=0.251 Sum_probs=28.3
Q ss_pred hHHHHHHHHHHHHHHHHcC---------CHHHHHHHHHHHHHHHHH
Q 026767 5 PWDAAKHMESAAALAKELH---------NWREVADFYRKASELYNE 41 (233)
Q Consensus 5 ~~~~a~~~~~~g~~~~~~g---------~~~eA~~~~~~A~~l~~~ 41 (233)
.+..+.++.|+|.+|.+.+ ...+|..+|++|.-+|.-
T Consensus 103 ~fEka~VLfNiaal~s~~A~~~~~~~~~~~K~A~~~fq~AAG~f~~ 148 (348)
T cd09242 103 AFEKASVLFNIGALLSQLAAEKYREDEDDLKEAITNLQQAAGCFQY 148 (348)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHH
Confidence 5677888888888875432 367899999999998863
No 401
>PRK10941 hypothetical protein; Provisional
Probab=68.28 E-value=32 Score=28.73 Aligned_cols=73 Identities=18% Similarity=0.030 Sum_probs=59.3
Q ss_pred HcCCchHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHh
Q 026767 41 ECGRSQPASDALAKAARALE-DAVPEDAIQLYTDACIMLEEDDKEQMAFDLYRAATNVYIKLEKYADAATFLLRWGLAAD 119 (233)
Q Consensus 41 ~~g~~~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~~~~~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~ 119 (233)
...+..-..+.+.|+=.+|. .++++.|+.+.++.+.+.++.- .-...-|.+|.++|.+..|..-++.-++.+-
T Consensus 173 ~a~~~~il~Rml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp------~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P 246 (269)
T PRK10941 173 EADNIEVIRKLLDTLKAALMEEKQMELALRASEALLQFDPEDP------YEIRDRGLIYAQLDCEHVALSDLSYFVEQCP 246 (269)
T ss_pred CCCHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCH------HHHHHHHHHHHHcCCcHHHHHHHHHHHHhCC
Confidence 34444556778888888888 7999999999999999988643 2456788999999999999999998887653
No 402
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=67.78 E-value=4.4 Score=35.00 Aligned_cols=101 Identities=16% Similarity=0.084 Sum_probs=73.0
Q ss_pred HHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcC-------------ChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Q 026767 51 ALAKAARALE-DAVPEDAIQLYTDACIMLEEDD-------------KEQMAFDLYRAATNVYIKLEKYADAATFLLRWGL 116 (233)
Q Consensus 51 ~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g-------------~~~~~~~~l~~lg~~~~~~g~~~~A~~~~~~al~ 116 (233)
...+.|.-.. .++++.|..-|.+++....... -......+..+++.+-++.+.+..|+.....++.
T Consensus 224 ~~k~~~~~~~kk~~~~~a~~k~~k~~r~~~~~s~~~~~e~~~~~~~~~~~r~~~~~n~~~~~lk~~~~~~a~~~~~~~~~ 303 (372)
T KOG0546|consen 224 KKKNIGNKEFKKQRYREALAKYRKALRYLSEQSRDREKEQENRIPPLRELRFSIRRNLAAVGLKVKGRGGARFRTNEALR 303 (372)
T ss_pred hhhccchhhhhhccHhHHHHHHHHHhhhhcccccccccccccccccccccccccccchHHhcccccCCCcceeccccccc
Confidence 3344454444 5777777777777776655110 0112235677889999999999999988777765
Q ss_pred HHhHccCcchHHHhHHHHHHHHHhhCCHHHHHHHHHHhhcC
Q 026767 117 AADKCNATNSQCKAYLSAIIVYLYANDFKQAEKCYNDCSQV 157 (233)
Q Consensus 117 ~~~~~~~~~~~a~~~~~lg~~~~~~gd~~~A~~~~~~al~~ 157 (233)
..+....+++..+..+...-++++|++.++.+...
T Consensus 304 ------~~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~ 338 (372)
T KOG0546|consen 304 ------DERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQK 338 (372)
T ss_pred ------cChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhcc
Confidence 56677788999999999999999999999998743
No 403
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=67.54 E-value=34 Score=23.34 Aligned_cols=52 Identities=13% Similarity=0.070 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHccCcchHHHhHHHHHHHHHhhCCH
Q 026767 89 DLYRAATNVYIKLEKYADAATFLLRWGLAADKCNATNSQCKAYLSAIIVYLYANDF 144 (233)
Q Consensus 89 ~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~gd~ 144 (233)
.+...++..+...|++++|++.+-..+..-+. ..... +...+..++-..|.-
T Consensus 23 ~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~--~~~~~--ar~~ll~~f~~lg~~ 74 (90)
T PF14561_consen 23 DARYALADALLAAGDYEEALDQLLELVRRDRD--YEDDA--ARKRLLDIFELLGPG 74 (90)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TT--CCCCH--HHHHHHHHHHHH-TT
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc--ccccH--HHHHHHHHHHHcCCC
Confidence 57889999999999999999988877743222 22233 334444555555553
No 404
>KOG1497 consensus COP9 signalosome, subunit CSN4 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=67.50 E-value=82 Score=27.22 Aligned_cols=71 Identities=21% Similarity=0.196 Sum_probs=51.5
Q ss_pred hHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHh--HccCcchHHHhHHHHHHHHHhhCCHHHHHHHHHHhh
Q 026767 84 EQMAFDLYRAATNVYIKLEKYADAATFLLRWGLAAD--KCNATNSQCKAYLSAIIVYLYANDFKQAEKCYNDCS 155 (233)
Q Consensus 84 ~~~~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~--~~~~~~~~a~~~~~lg~~~~~~gd~~~A~~~~~~al 155 (233)
..+.+.+...++.+|-+.+++..|...+. ++.+-. ...+.......+..++..|+..+|.++|..+..++-
T Consensus 99 eEqv~~irl~LAsiYE~Eq~~~~aaq~L~-~I~~~tg~~~~d~~~kl~l~iriarlyLe~~d~veae~~inRaS 171 (399)
T KOG1497|consen 99 EEQVASIRLHLASIYEKEQNWRDAAQVLV-GIPLDTGQKAYDVEQKLLLCIRIARLYLEDDDKVEAEAYINRAS 171 (399)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHh-ccCcccchhhhhhHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 34556788899999999999999998776 232211 011112233456899999999999999999999874
No 405
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=67.22 E-value=48 Score=27.05 Aligned_cols=54 Identities=15% Similarity=-0.048 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHHHHh-cC--ChHHHHHHHHHHHHHH-HHhccHHHHHHHHHHHHHHHh
Q 026767 65 EDAIQLYTDACIMLEE-DD--KEQMAFDLYRAATNVY-IKLEKYADAATFLLRWGLAAD 119 (233)
Q Consensus 65 ~~A~~~~~~Al~~~~~-~g--~~~~~~~~l~~lg~~~-~~~g~~~~A~~~~~~al~~~~ 119 (233)
+.|.+.|++|+++... .. ++...+.++ |.+.+| --+|+.++|+...+++..-..
T Consensus 143 ~~a~~aY~~A~~~a~~~L~~~~p~rLgl~L-N~svF~yei~~~~~~A~~ia~~afd~a~ 200 (236)
T PF00244_consen 143 EKALEAYEEALEIAKKELPPTHPLRLGLAL-NYSVFYYEILNDPEKAIEIAKQAFDEAI 200 (236)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTSHHHHHHHH-HHHHHHHHTSS-HHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhhHHHHHhcccCCCCcHHHHHHH-HHHHHHHHHcCChHHHHHHHHHHHHHHH
Confidence 6788888888888887 33 444444344 444444 447888888888888776554
No 406
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=66.90 E-value=74 Score=31.12 Aligned_cols=27 Identities=26% Similarity=0.247 Sum_probs=16.9
Q ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHH
Q 026767 90 LYRAATNVYIKLEKYADAATFLLRWGL 116 (233)
Q Consensus 90 ~l~~lg~~~~~~g~~~~A~~~~~~al~ 116 (233)
++.-+-.+|.+++++++|..+|+++..
T Consensus 79 tLq~l~~~y~d~~~~d~~~~~Ye~~~~ 105 (932)
T KOG2053|consen 79 TLQFLQNVYRDLGKLDEAVHLYERANQ 105 (932)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHh
Confidence 455566666666666666666666653
No 407
>cd09246 BRO1_Alix_like_1 Protein-interacting, N-terminal, Bro1-like domain of an Uncharacterized family of the BRO1_Alix_like superfamily. This domain family is comprised of uncharacterized proteins. It belongs to the BRO1_Alix_like superfamily which includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, HD-PTP, Brox, Bro1, Rim20 and Rim23 interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Alix participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also functions in apoptosis. HD-PTP and Bro
Probab=66.40 E-value=88 Score=27.18 Aligned_cols=38 Identities=13% Similarity=0.255 Sum_probs=28.2
Q ss_pred hHHHHHHHHHHHHHHHHcC---------CHHHHHHHHHHHHHHHHHc
Q 026767 5 PWDAAKHMESAAALAKELH---------NWREVADFYRKASELYNEC 42 (233)
Q Consensus 5 ~~~~a~~~~~~g~~~~~~g---------~~~eA~~~~~~A~~l~~~~ 42 (233)
.+..+..+.|+|.+|.+.+ ...+|..+|++|.-+|.-.
T Consensus 107 ~fEka~vlfNiaal~s~~a~~~~~~~~~glK~A~~~fq~AAG~F~~l 153 (353)
T cd09246 107 HFEKAAVLFNLGALSSQLGLQQDRTTAEGIKQACHAFQAAAGAFAHL 153 (353)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHH
Confidence 5677788888888875422 2678999999999888643
No 408
>cd09243 BRO1_Brox_like Protein-interacting Bro1-like domain of human Brox1 and related proteins. This family contains the Bro1-like domain of a single-domain protein, human Brox, and related domains. It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, HD-PTP, Brox, Bro1, Rim20, and Rim23, interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Bro1-like domains are boomerang-shaped, and part of the domain is a tetratricopeptide repeat (TPR)-like structure. Bro1-like domains bind components of the ESCRT-III complex: CHMP4 in the case of Brox. Human Brox can bind to human immunodeficiency virus type 1 (
Probab=66.26 E-value=90 Score=27.23 Aligned_cols=36 Identities=17% Similarity=0.249 Sum_probs=27.3
Q ss_pred hHHHHHHHHHHHHHHHH----c--------CCHHHHHHHHHHHHHHHH
Q 026767 5 PWDAAKHMESAAALAKE----L--------HNWREVADFYRKASELYN 40 (233)
Q Consensus 5 ~~~~a~~~~~~g~~~~~----~--------g~~~eA~~~~~~A~~l~~ 40 (233)
.+..+.++.|+|.+|.+ + ....+|..+|++|.-+|.
T Consensus 105 ~fEk~sVLfNigal~s~~As~~~~~~~~s~e~~K~A~~~fq~AAG~F~ 152 (353)
T cd09243 105 IFELASMLFNVALWYTKHASKLAGKEDITEDEAKDVHKSLRTAAGIFQ 152 (353)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHHHHHHH
Confidence 67888999999999842 1 225678888999888875
No 409
>PF13041 PPR_2: PPR repeat family
Probab=66.19 E-value=11 Score=22.11 Aligned_cols=27 Identities=26% Similarity=0.364 Sum_probs=24.5
Q ss_pred HhHHHHHHHHHhhCCHHHHHHHHHHhh
Q 026767 129 KAYLSAIIVYLYANDFKQAEKCYNDCS 155 (233)
Q Consensus 129 ~~~~~lg~~~~~~gd~~~A~~~~~~al 155 (233)
.+|+.+...+.+.|++++|.+.|++-.
T Consensus 4 ~~yn~li~~~~~~~~~~~a~~l~~~M~ 30 (50)
T PF13041_consen 4 VTYNTLISGYCKAGKFEEALKLFKEMK 30 (50)
T ss_pred HHHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 468899999999999999999999976
No 410
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=65.80 E-value=94 Score=27.31 Aligned_cols=59 Identities=7% Similarity=-0.037 Sum_probs=43.0
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh-h--CCHHHHHHHHHHHHHHHH
Q 026767 17 ALAKELHNWREVADFYRKASELYNECGRSQPASDALAKAARALE-D--AVPEDAIQLYTDACIMLE 79 (233)
Q Consensus 17 ~~~~~~g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~-~--g~~~~A~~~~~~Al~~~~ 79 (233)
.-..+.++|..|...+.....- -.++.. ...+..+...|. . -++.+|.+++++.+....
T Consensus 139 ~~l~n~~~y~aA~~~l~~l~~r--l~~~~~--~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~~~ 200 (379)
T PF09670_consen 139 KELFNRYDYGAAARILEELLRR--LPGREE--YQRYKDLCEGYDAWDRFDHKEALEYLEKLLKRDK 200 (379)
T ss_pred HHHHhcCCHHHHHHHHHHHHHh--CCchhh--HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhh
Confidence 3344589999999999998764 122222 567888888777 3 899999999998776644
No 411
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=65.28 E-value=1.6e+02 Score=29.90 Aligned_cols=67 Identities=10% Similarity=-0.033 Sum_probs=36.7
Q ss_pred HHHHHHHHHhccHHHHHHHHHHH------HHHHhHccCcchHHHhH-HHHHHHHHhhCCHHHHHHHHHHhhcCC
Q 026767 92 RAATNVYIKLEKYADAATFLLRW------GLAADKCNATNSQCKAY-LSAIIVYLYANDFKQAEKCYNDCSQVD 158 (233)
Q Consensus 92 ~~lg~~~~~~g~~~~A~~~~~~a------l~~~~~~~~~~~~a~~~-~~lg~~~~~~gd~~~A~~~~~~al~~~ 158 (233)
...+.+|...|+.++|+..|+.+ +.+..+......+-..+ ..+.--...++++.+|-+...+++..+
T Consensus 956 ~~Aal~Ye~~GklekAl~a~~~~~dWr~~l~~a~ql~~~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd~ 1029 (1265)
T KOG1920|consen 956 DEAALMYERCGKLEKALKAYKECGDWREALSLAAQLSEGKDELVILAEELVSRLVEQRKHYEAAKILLEYLSDP 1029 (1265)
T ss_pred cHHHHHHHHhccHHHHHHHHHHhccHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHhcCH
Confidence 44455666677777777776553 33333333333332222 444455556677777777777666443
No 412
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=64.65 E-value=1.1e+02 Score=27.76 Aligned_cols=50 Identities=10% Similarity=-0.029 Sum_probs=24.9
Q ss_pred HHHhhCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHHH-hcCCHHHHHHHHhhc
Q 026767 137 VYLYANDFKQAEKCYNDCSQVDAFLRSDQNRCATKLISAY-TEGDVEEIKRVAQSS 191 (233)
Q Consensus 137 ~~~~~gd~~~A~~~~~~al~~~~~~~~~e~~~l~~L~~a~-~~gd~~~a~~~~~~~ 191 (233)
-...+|+|.++.-+-.....+. ++.++. .-+|-.. +..++.+|-+++..-
T Consensus 471 yLysqgey~kc~~ys~WL~~ia---PS~~~~--RLlGl~l~e~k~Y~eA~~~l~~L 521 (549)
T PF07079_consen 471 YLYSQGEYHKCYLYSSWLTKIA---PSPQAY--RLLGLCLMENKRYQEAWEYLQKL 521 (549)
T ss_pred HHHhcccHHHHHHHHHHHHHhC---CcHHHH--HHHHHHHHHHhhHHHHHHHHHhC
Confidence 3455677766665555443322 233332 2333333 566666666666554
No 413
>KOG3024 consensus Uncharacterized conserved protein [Function unknown]
Probab=64.25 E-value=89 Score=26.45 Aligned_cols=133 Identities=12% Similarity=0.028 Sum_probs=78.5
Q ss_pred cCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHH
Q 026767 22 LHNWREVADFYRKASELYNECGRSQPASDALAKAARALE-DAVPEDAIQLYTDACIMLEEDDKEQMAFDLYRAATNVYIK 100 (233)
Q Consensus 22 ~g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~~~~~~~~l~~lg~~~~~ 100 (233)
.|++=+|.+.|+.-...|........+...+..-+..+. .++..-|..+.-.-++.++........ .-.-|++.+...
T Consensus 19 ~~d~Yeahqm~RTl~fR~~~~K~~~~aieL~~~ga~~ffk~~Q~~saaDl~~~~le~~eka~~ad~~-~~~anl~~ll~e 97 (312)
T KOG3024|consen 19 LGDYYEAHQMYRTLVFRYTRQKAHEDAIELLYDGALCFFKLKQRGSAADLLVLVLEVLEKAEVADSL-LKVANLAELLGE 97 (312)
T ss_pred cccHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHhhHhH-HHHHHHHHHHhh
Confidence 567888888888777777766655555555555555544 444333433333333333321100000 011345555555
Q ss_pred hccHHHH-HHHHHHHHHHHhHc-cCcchHHHhHHHHHHHHHhhCCHHHHHHHHHHhh
Q 026767 101 LEKYADA-ATFLLRWGLAADKC-NATNSQCKAYLSAIIVYLYANDFKQAEKCYNDCS 155 (233)
Q Consensus 101 ~g~~~~A-~~~~~~al~~~~~~-~~~~~~a~~~~~lg~~~~~~gd~~~A~~~~~~al 155 (233)
.+--... ..+.+++++...+. +.+.+-...+..+|.....-+++.+|.++|-.+-
T Consensus 98 ~~~~eper~~~v~raikWS~~~~~~k~G~p~lH~~la~~l~~e~~~~~a~~HFll~~ 154 (312)
T KOG3024|consen 98 ADPSEPERKTFVRRAIKWSKEFGEGKYGHPELHALLADKLWTEDNVEEARRHFLLSE 154 (312)
T ss_pred cCCCccHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcccHHHHHhHhhhcC
Confidence 4433333 34556677776665 4556667778999999999999999999997653
No 414
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=62.36 E-value=55 Score=23.44 Aligned_cols=98 Identities=15% Similarity=0.078 Sum_probs=58.7
Q ss_pred HHhh-hCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHh----ccHHHHHHHHHHHHHHHhHc-cCcchHHHh
Q 026767 57 RALE-DAVPEDAIQLYTDACIMLEEDDKEQMAFDLYRAATNVYIKL----EKYADAATFLLRWGLAADKC-NATNSQCKA 130 (233)
Q Consensus 57 ~~~~-~g~~~~A~~~~~~Al~~~~~~g~~~~~~~~l~~lg~~~~~~----g~~~~A~~~~~~al~~~~~~-~~~~~~a~~ 130 (233)
.-+. +|++-+|++..+..+....+..+.+ ..+..-|.++.++ .+.+-=..++.-+++.+.+. ...+.-|..
T Consensus 4 ~~~~~rGnhiKAL~iied~i~~h~~~~~~~---~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~~A~~ 80 (111)
T PF04781_consen 4 KDYFARGNHIKALEIIEDLISRHGEDESSW---LLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPDSAHS 80 (111)
T ss_pred HHHHHccCHHHHHHHHHHHHHHccCCCchH---HHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChhHHHH
Confidence 3344 7999999999999988877766543 2455566666543 34444444444444444332 222333666
Q ss_pred HHHHHHHHHhhCCHHHHHHHHHHhhcC
Q 026767 131 YLSAIIVYLYANDFKQAEKCYNDCSQV 157 (233)
Q Consensus 131 ~~~lg~~~~~~gd~~~A~~~~~~al~~ 157 (233)
++.+|.-.-..-.|.++....++++.+
T Consensus 81 L~~la~~l~s~~~Ykk~v~kak~~Lsv 107 (111)
T PF04781_consen 81 LFELASQLGSVKYYKKAVKKAKRGLSV 107 (111)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHhcc
Confidence 666666655555677777777776644
No 415
>PF03097 BRO1: BRO1-like domain; InterPro: IPR004328 The BRO1 domain has about 390 residues and occurs in a number of eukaryotic proteins such as yeast BRO1 and human PDCD6IP/Alix that are involved in protein targeting to the vacuole or lysosome. The BRO1 domain of fungal and mammalian proteins binds with multivesicular body components (ESCRT-III proteins) such as yeast Snf7 and mammalian CHMP4b, and can function to target BRO1 domain-containing proteins to endosomes [, , ]. The BRO1 domain has a boomerang shape composed of 14 alpha-helices and 3 beta-sheets. It contains a TPR-like substructure in the central part []. The C terminus is less conserved. This domain is found in a number of signal transduction proteins. The Saccharomyces cerevisiae protein Bro1p is required for sorting endocytic cargo to the lumen of multivesicular bodies (MVBs). Alix appears to be the mammalian orthologue of Bro1p []. Alix is also involved in the ESCRT pathway, which facilitates membrane fission events during enveloped virus budding, multivesicular body formation, and cytokinesis. To promote HIV budding and cytokinesis, the ALIX protein must bind and recruit CHMP4 subunits of the ESCRT-III complex. The Bro1 domain of ALIX binds specifically to C-terminal residues of the human CHMP4 proteins [, ]. Likewise, the Homo sapiens Brox protein has a Bro1 domain. CHMP4 proteins are components of endosomal sorting complex required for transport III, via their Bro1 domains and to play roles in sorting of ubiquitinated cargoes []. Alix also binds to the nucleocapsid (NC) domain of HIV-1 Gag. Alix and the Bro1 domain can be specifically packaged into viral particles via the NC []. Myopic is the Drosophila homologue of the Bro1-domain tyrosine phosphatase HD-PTP, and it promotes the epidermal growth factor receptor (EGFR) signalling []. The Caenorhabditis elegans Bro1-domain protein, ALX-1, interacts with LIN-12/Notch. The EGO-2 protein also contains a Bro1 domain. Notch-type signalling mediates numerous inductive events during development [].; PDB: 2VSV_A 1ZB1_A 3UM3_A 3ULY_A 3R9M_A 3ZXP_A 3UM2_A 3UM0_A 3UM1_D 3RAU_B ....
Probab=62.34 E-value=1.1e+02 Score=26.68 Aligned_cols=37 Identities=19% Similarity=0.417 Sum_probs=26.6
Q ss_pred hHHHHHHHHHHHHHHHHcC---------CHHHHHHHHHHHHHHHHH
Q 026767 5 PWDAAKHMESAAALAKELH---------NWREVADFYRKASELYNE 41 (233)
Q Consensus 5 ~~~~a~~~~~~g~~~~~~g---------~~~eA~~~~~~A~~l~~~ 41 (233)
.+..+.++.|+|.+|.+.+ ...+|..+|++|.-+|.-
T Consensus 103 ~fE~a~vL~N~aa~~s~~a~~~~~~~~~~~k~A~~~fq~AAg~f~~ 148 (377)
T PF03097_consen 103 AFEKACVLFNIAALYSQLAASQNRSTDEGLKEACNYFQRAAGIFQY 148 (377)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHS-TTSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHHHH
Confidence 4667788888887775422 356888888888888753
No 416
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=61.77 E-value=53 Score=27.64 Aligned_cols=64 Identities=17% Similarity=0.084 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Q 026767 48 ASDALAKAARALE-DAVPEDAIQLYTDACIMLEEDDKEQMAFDLYRAATNVYIKLEKYADAATFLLRWGLA 117 (233)
Q Consensus 48 ~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~~~~~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~ 117 (233)
-..++..++..+. .|+++.++..+++-+++.+-.. ..+..+-..|...|+...|+..|++.-.+
T Consensus 152 ~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E------~~~~~lm~~y~~~g~~~~ai~~y~~l~~~ 216 (280)
T COG3629 152 FIKALTKLAEALIACGRADAVIEHLERLIELDPYDE------PAYLRLMEAYLVNGRQSAAIRAYRQLKKT 216 (280)
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccch------HHHHHHHHHHHHcCCchHHHHHHHHHHHH
Confidence 3567778888888 7999999999988887765433 36677888999999999999999998874
No 417
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=61.54 E-value=84 Score=29.58 Aligned_cols=65 Identities=11% Similarity=0.115 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHH------HhHccCcchHH---------HhHHHHHHHHHhhCCHHHHHHHHHHh
Q 026767 90 LYRAATNVYIKLEKYADAATFLLRWGLA------ADKCNATNSQC---------KAYLSAIIVYLYANDFKQAEKCYNDC 154 (233)
Q Consensus 90 ~l~~lg~~~~~~g~~~~A~~~~~~al~~------~~~~~~~~~~a---------~~~~~lg~~~~~~gd~~~A~~~~~~a 154 (233)
=+..||++....+++..|.+++.++..+ +...|+..+.. .-.+..-.+++..|++++..+.+...
T Consensus 668 Kw~~Lg~~al~~~~l~lA~EC~~~a~d~~~LlLl~t~~g~~~~l~~la~~~~~~g~~N~AF~~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 668 KWRQLGDAALSAGELPLASECFLRARDLGSLLLLYTSSGNAEGLAVLASLAKKQGKNNLAFLAYFLSGDYEECLELLIST 747 (794)
T ss_pred HHHHHHHHHhhcccchhHHHHHHhhcchhhhhhhhhhcCChhHHHHHHHHHHhhcccchHHHHHHHcCCHHHHHHHHHhc
Confidence 4678999999999999999999998542 22223322111 01122334555666666666665554
No 418
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=59.19 E-value=1.2e+02 Score=26.42 Aligned_cols=127 Identities=10% Similarity=0.005 Sum_probs=85.1
Q ss_pred HHHHHHHHHHHHHHH------HHcCCchHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhc--------------C-
Q 026767 25 WREVADFYRKASELY------NECGRSQPASDALAKAARALE-DAVPEDAIQLYTDACIMLEED--------------D- 82 (233)
Q Consensus 25 ~~eA~~~~~~A~~l~------~~~g~~~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~--------------g- 82 (233)
|.++...|..++..+ .-.....--..+|..++.++. +|+++.|-++.++|+=.++.. |
T Consensus 10 Y~~~q~~F~~~v~~~Dp~~l~~ll~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~ 89 (360)
T PF04910_consen 10 YQEAQEQFYAAVQSHDPNALINLLQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGN 89 (360)
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCc
Confidence 455555555555432 111222234567788999999 899999999999999776621 1
Q ss_pred --------ChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHccCcchHHHhHHHHHHHHHhhCCHHHHHHHHHHh
Q 026767 83 --------KEQMAFDLYRAATNVYIKLEKYADAATFLLRWGLAADKCNATNSQCKAYLSAIIVYLYANDFKQAEKCYNDC 154 (233)
Q Consensus 83 --------~~~~~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~gd~~~A~~~~~~a 154 (233)
..+.--.++.+....+.+.|-+..|+++++-.+.+ ........+++-|=...++.++|+--++.++..
T Consensus 90 ~rL~~~~~eNR~fflal~r~i~~L~~RG~~rTAlE~~KlLlsL----dp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~ 165 (360)
T PF04910_consen 90 CRLDYRRPENRQFFLALFRYIQSLGRRGCWRTALEWCKLLLSL----DPDEDPLGVLLFIDYYALRSRQYQWLIDFSESP 165 (360)
T ss_pred cccCCccccchHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhc----CCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhH
Confidence 12333457888888899999999999999876654 222133335566666667778888888877765
Q ss_pred h
Q 026767 155 S 155 (233)
Q Consensus 155 l 155 (233)
.
T Consensus 166 ~ 166 (360)
T PF04910_consen 166 L 166 (360)
T ss_pred h
Confidence 4
No 419
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=57.73 E-value=1.1e+02 Score=27.64 Aligned_cols=66 Identities=14% Similarity=0.047 Sum_probs=49.1
Q ss_pred hHHHhHHHHHHHHHhhCCHHHHHHHHHHhh-cCCCCCCchHHHHHHHHHHHH-hcCCHHHHHHHHhhc
Q 026767 126 SQCKAYLSAIIVYLYANDFKQAEKCYNDCS-QVDAFLRSDQNRCATKLISAY-TEGDVEEIKRVAQSS 191 (233)
Q Consensus 126 ~~a~~~~~lg~~~~~~gd~~~A~~~~~~al-~~~~~~~~~e~~~l~~L~~a~-~~gd~~~a~~~~~~~ 191 (233)
..+..+..++....+.|++.+|.+.+...+ .....-++.-..++..|.+.- ..+++-+|..+++=+
T Consensus 520 ~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a 587 (625)
T KOG4422|consen 520 WPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLA 587 (625)
T ss_pred CChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 345567788888999999999999998876 222333445555677777754 789999999998877
No 420
>COG2178 Predicted RNA-binding protein of the translin family [Translation, ribosomal structure and biogenesis]
Probab=57.47 E-value=97 Score=24.67 Aligned_cols=52 Identities=19% Similarity=0.111 Sum_probs=34.9
Q ss_pred hCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHH
Q 026767 61 DAVPEDAIQLYTDACIMLEEDDKEQMAFDLYRAATNVYIKLEKYADAATFLL 112 (233)
Q Consensus 61 ~g~~~~A~~~~~~Al~~~~~~g~~~~~~~~l~~lg~~~~~~g~~~~A~~~~~ 112 (233)
.|++++|...+.+|.+......+.-..---+...|.+-..+..|.+|..+|.
T Consensus 42 ~~~~eeA~~~l~~a~~~v~~Lk~~l~~~pel~~ag~~~~a~QEyvEA~~l~~ 93 (204)
T COG2178 42 RGDFEEAEKKLKKASEAVEKLKRLLAGFPELYFAGFVTTALQEYVEATLLYS 93 (204)
T ss_pred hccHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhcchHHHHHHHHHHHH
Confidence 6999999999999998888765322222233344555556677777777665
No 421
>PF05053 Menin: Menin; InterPro: IPR007747 MEN1, the gene responsible for multiple endocrine neoplasia type 1, is a tumour suppressor gene that encodes a protein called Menin which may be an atypical GTPase stimulated by nm23 [].; GO: 0005634 nucleus; PDB: 3RE2_A 3U84_B 3U86_A 3U88_B 3U85_A.
Probab=56.10 E-value=1.7e+02 Score=27.23 Aligned_cols=89 Identities=9% Similarity=-0.008 Sum_probs=52.8
Q ss_pred HHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHH--HhccHHHHHHHHHHHHHHHhHccCcchHHHhHHHHHHHHHhhCC
Q 026767 66 DAIQLYTDACIMLEEDDKEQMAFDLYRAATNVYI--KLEKYADAATFLLRWGLAADKCNATNSQCKAYLSAIIVYLYAND 143 (233)
Q Consensus 66 ~A~~~~~~Al~~~~~~g~~~~~~~~l~~lg~~~~--~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~gd 143 (233)
+-...-++-+-+.-+.|....=-.++.+||++-- ....-..++++|.+|+...+..-.. ....-|..+|-.|.+.++
T Consensus 255 e~~~lqq~lLw~lyd~ghl~~YPmALg~LadLeEi~pt~~r~~~~~l~~~AI~sa~~~Y~n-~HvYPYty~gg~~yR~~~ 333 (618)
T PF05053_consen 255 ELAQLQQDLLWLLYDMGHLARYPMALGNLADLEEIDPTPGRPTPLELFNEAISSARTYYNN-HHVYPYTYLGGYYYRHKR 333 (618)
T ss_dssp HHHHHHHHHHHHHHHTTTTTT-HHHHHHHHHHHHHS--TTS--HHHHHHHHHHHHHHHCTT---SHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHHHHhcCchhhCchhhhhhHhHHhhccCCCCCCHHHHHHHHHHHHHHHhcC-CccccceehhhHHHHHHH
Confidence 3334444455555555532222245666666533 2334456789999999877664322 223346889999999999
Q ss_pred HHHHHHHHHHhh
Q 026767 144 FKQAEKCYNDCS 155 (233)
Q Consensus 144 ~~~A~~~~~~al 155 (233)
|.+|+.+|-++-
T Consensus 334 ~~eA~~~Wa~aa 345 (618)
T PF05053_consen 334 YREALRSWAEAA 345 (618)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 999999999886
No 422
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=54.85 E-value=72 Score=26.01 Aligned_cols=55 Identities=20% Similarity=0.106 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHHHHHH-cC--CchHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHh
Q 026767 26 REVADFYRKASELYNE-CG--RSQPASDALAKAARALE-DAVPEDAIQLYTDACIMLEE 80 (233)
Q Consensus 26 ~eA~~~~~~A~~l~~~-~g--~~~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~ 80 (233)
++|...|++|..+... .. +|..-+.+|+-.-..|+ .|++++|++..++|.+-...
T Consensus 143 ~~a~~aY~~A~~~a~~~L~~~~p~rLgl~LN~svF~yei~~~~~~A~~ia~~afd~a~~ 201 (236)
T PF00244_consen 143 EKALEAYEEALEIAKKELPPTHPLRLGLALNYSVFYYEILNDPEKAIEIAKQAFDEAIS 201 (236)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhhHHHHHhcccCCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHh
Confidence 6889999999999887 33 24444555555545556 69999999999988766553
No 423
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=54.85 E-value=1.3e+02 Score=25.52 Aligned_cols=113 Identities=14% Similarity=0.072 Sum_probs=63.0
Q ss_pred HHHcCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh-hCCHHHHHHHH---------------HHHHHHHHhcC
Q 026767 19 AKELHNWREVADFYRKASELYNECGRSQPASDALAKAARALE-DAVPEDAIQLY---------------TDACIMLEEDD 82 (233)
Q Consensus 19 ~~~~g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~-~g~~~~A~~~~---------------~~Al~~~~~~g 82 (233)
....|++.+|...+..++....+.++ +...++.+|. .|+.+.|...+ +.-+++..+..
T Consensus 144 ~~~~e~~~~a~~~~~~al~~~~~~~~------~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa 217 (304)
T COG3118 144 LIEAEDFGEAAPLLKQALQAAPENSE------AKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAA 217 (304)
T ss_pred hhhccchhhHHHHHHHHHHhCcccch------HHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHh
Confidence 34589999999999999988765533 2222333333 23333222211 12233333321
Q ss_pred --------------ChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHccCcchHHHhHHHHHHHHHhhC
Q 026767 83 --------------KEQMAFDLYRAATNVYIKLEKYADAATFLLRWGLAADKCNATNSQCKAYLSAIIVYLYAN 142 (233)
Q Consensus 83 --------------~~~~~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g 142 (233)
++.. ...-..++..+...|+++.|++.+-..+.. ..+...+.++ ..+..++-..|
T Consensus 218 ~~~~~~~l~~~~aadPdd-~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~--d~~~~d~~~R--k~lle~f~~~g 286 (304)
T COG3118 218 ATPEIQDLQRRLAADPDD-VEAALALADQLHLVGRNEAALEHLLALLRR--DRGFEDGEAR--KTLLELFEAFG 286 (304)
T ss_pred cCCCHHHHHHHHHhCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--cccccCcHHH--HHHHHHHHhcC
Confidence 1111 246678999999999999999988766543 2333334333 33444444444
No 424
>PF03745 DUF309: Domain of unknown function (DUF309); InterPro: IPR005500 This family consists of eubacterial and archaebacterial proteins of unknown function. The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.; PDB: 2CXD_B 2CWY_A 2IJQ_B.
Probab=54.80 E-value=27 Score=22.07 Aligned_cols=57 Identities=14% Similarity=-0.012 Sum_probs=32.5
Q ss_pred HHHHHHhccHHHHHHHHHHHHHHHhHccCcchHHHhHHHHHHHHHhhCCHHHHHHHH
Q 026767 95 TNVYIKLEKYADAATFLLRWGLAADKCNATNSQCKAYLSAIIVYLYANDFKQAEKCY 151 (233)
Q Consensus 95 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~gd~~~A~~~~ 151 (233)
|.-+...|+|=+|-+.++..=............+-+....+..+.+.|+...|.+.+
T Consensus 6 ~~~l~n~g~f~EaHEvlE~~W~~~~~~~~~~lqglIq~A~a~~h~~~gn~~gA~~l~ 62 (62)
T PF03745_consen 6 GIELFNAGDFFEAHEVLEELWKAAPGPERDFLQGLIQLAVALYHLRRGNPRGARRLL 62 (62)
T ss_dssp HHHHHHTT-HHHHHHHHHHHCCCT-CCHHHHHHHHHHHHHHHHHHHCTSHHHHHHHH
T ss_pred HHHHHcCCCHHHhHHHHHHHHHHCCcchHHHHHHHHHHHHHHHHHHhCCHHHHHHhC
Confidence 344556788888888887553211111111223344466777788888888877653
No 425
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=54.79 E-value=1.8e+02 Score=27.06 Aligned_cols=139 Identities=14% Similarity=0.127 Sum_probs=74.6
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCch-HHHHHHHHHHHHhh--hC---CHHHHHHHHHHHHHHHH
Q 026767 6 WDAAKHMESAAALAKELHNWREVADFYRKASELYNECGRSQ-PASDALAKAARALE--DA---VPEDAIQLYTDACIMLE 79 (233)
Q Consensus 6 ~~~a~~~~~~g~~~~~~g~~~eA~~~~~~A~~l~~~~g~~~-~~a~~l~~lg~~~~--~g---~~~~A~~~~~~Al~~~~ 79 (233)
+..+.-+..++.++-..|+..+|-..-.++..+|+..-+.. ..-.++.-....++ .- .++..-.+|.+.+.+..
T Consensus 283 y~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~ 362 (656)
T KOG1914|consen 283 YDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIED 362 (656)
T ss_pred HHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhc
Confidence 44556666777777777776666666666666665432211 11111111111122 11 24455566666666655
Q ss_pred hcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHccCcchHHHhH-HHHHHHHHhhCCHHHHHHHHHHhh
Q 026767 80 EDDKEQMAFDLYRAATNVYIKLEKYADAATFLLRWGLAADKCNATNSQCKAY-LSAIIVYLYANDFKQAEKCYNDCS 155 (233)
Q Consensus 80 ~~g~~~~~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~-~~lg~~~~~~gd~~~A~~~~~~al 155 (233)
..-. .++.++-..-.+..-...|...|.++.+. +... -.+| .+.-.=|..++|..-|.+.|+--+
T Consensus 363 ~~~t-----Lv~~~~mn~irR~eGlkaaR~iF~kaR~~----~r~~--hhVfVa~A~mEy~cskD~~~AfrIFeLGL 428 (656)
T KOG1914|consen 363 IDLT-----LVYCQYMNFIRRAEGLKAARKIFKKARED----KRTR--HHVFVAAALMEYYCSKDKETAFRIFELGL 428 (656)
T ss_pred cCCc-----eehhHHHHHHHHhhhHHHHHHHHHHHhhc----cCCc--chhhHHHHHHHHHhcCChhHHHHHHHHHH
Confidence 4332 23444455555566666777777776643 2222 2333 223334566789999999998875
No 426
>KOG1953 consensus Targeting complex (TRAPP) subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=54.35 E-value=8.5 Score=37.70 Aligned_cols=56 Identities=9% Similarity=-0.110 Sum_probs=46.5
Q ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHccCcchHHHhHHHHHHHHHh
Q 026767 85 QMAFDLYRAATNVYIKLEKYADAATFLLRWGLAADKCNATNSQCKAYLSAIIVYLY 140 (233)
Q Consensus 85 ~~~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~ 140 (233)
...+.+...+|+.++-.|++..|+++|.-|+++.+..++....+.+|.....|.+.
T Consensus 242 ksLGR~~Kq~gdy~LLAGrpvdAl~~fs~AIe~lk~t~DyLWlg~AldG~tVC~Ll 297 (1235)
T KOG1953|consen 242 KSLGRIEKQFGDYYLLAGRPVDALKHFSTAIELLKATGDYLWLGLALDGFTVCLLL 297 (1235)
T ss_pred hhHHHHHHhhcceeeecCCchHHHHHHHHHHHHHHhhhhheeehhhccchhHHHHH
Confidence 34567888999999999999999999999999999999998888888655555443
No 427
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=54.30 E-value=37 Score=18.85 Aligned_cols=22 Identities=14% Similarity=0.181 Sum_probs=13.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHH
Q 026767 12 MESAAALAKELHNWREVADFYR 33 (233)
Q Consensus 12 ~~~~g~~~~~~g~~~eA~~~~~ 33 (233)
+..+|-.+.++|++++|++.|+
T Consensus 4 ~y~~a~~~y~~~ky~~A~~~~~ 25 (36)
T PF07720_consen 4 LYGLAYNFYQKGKYDEAIHFFQ 25 (36)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHH
Confidence 4445666666777777777733
No 428
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=53.85 E-value=93 Score=23.37 Aligned_cols=65 Identities=12% Similarity=0.058 Sum_probs=45.7
Q ss_pred HHHHHHHHHHhh---h-CCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Q 026767 49 SDALAKAARALE---D-AVPEDAIQLYTDACIMLEEDDKEQMAFDLYRAATNVYIKLEKYADAATFLLRWGLA 117 (233)
Q Consensus 49 a~~l~~lg~~~~---~-g~~~~A~~~~~~Al~~~~~~g~~~~~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~ 117 (233)
..+..+++.++- . .+..+.+..++..+. ... +...-.|+.-++.-+.++++|++++.+....++.
T Consensus 32 ~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~--~~~--~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~ 100 (149)
T KOG3364|consen 32 KQSQFNLAWALVRSRDTEDVQEGIVILEDLLK--SAH--PERRRECLYYLAVGHYRLKEYSKSLRYVDALLET 100 (149)
T ss_pred HHHHHHHHHHHHcccchHHHHHhHHHHHHHhh--hcC--cccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhh
Confidence 344555555544 2 567788888887776 222 2222368999999999999999999999877753
No 429
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=53.07 E-value=1e+02 Score=23.64 Aligned_cols=22 Identities=18% Similarity=0.080 Sum_probs=12.0
Q ss_pred HHHHHHHHhccHHHHHHHHHHH
Q 026767 93 AATNVYIKLEKYADAATFLLRW 114 (233)
Q Consensus 93 ~lg~~~~~~g~~~~A~~~~~~a 114 (233)
--|.+++..|++.+|+.+++..
T Consensus 49 ~~~~l~i~r~~w~dA~rlLr~l 70 (160)
T PF09613_consen 49 FDGWLHIVRGDWDDALRLLREL 70 (160)
T ss_pred HHHHHHHHhCCHHHHHHHHHHH
Confidence 3455555555555555555543
No 430
>smart00101 14_3_3 14-3-3 homologues. 14-3-3 homologues mediates signal transduction by binding to phosphoserine-containing proteins. They are involved in growth factor signalling and also interact with MEK kinases.
Probab=52.46 E-value=80 Score=26.00 Aligned_cols=51 Identities=18% Similarity=0.049 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHH---cCCchHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHH
Q 026767 26 REVADFYRKASELYNE---CGRSQPASDALAKAARALE-DAVPEDAIQLYTDACI 76 (233)
Q Consensus 26 ~eA~~~~~~A~~l~~~---~g~~~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~ 76 (233)
++|...|++|.++... -=+|-..+.+|+-.-..|+ .+++++|++..++|.+
T Consensus 145 ~~a~~aY~~A~e~a~~~L~pt~PirLgLaLN~SVF~yEI~~~~~~A~~lAk~afd 199 (244)
T smart00101 145 ENTLVAYKSAQDIALAELPPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFD 199 (244)
T ss_pred HHHHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3566666666666543 2223333334443333344 4666666655555543
No 431
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=52.08 E-value=2.8e+02 Score=28.30 Aligned_cols=93 Identities=24% Similarity=0.292 Sum_probs=59.3
Q ss_pred HHHHHHHHHHcCCHHHHHHH-------HHHHHHHHHHcCCchHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCC
Q 026767 12 MESAAALAKELHNWREVADF-------YRKASELYNECGRSQPASDALAKAARALE-DAVPEDAIQLYTDACIMLEEDDK 83 (233)
Q Consensus 12 ~~~~g~~~~~~g~~~eA~~~-------~~~A~~l~~~~g~~~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~ 83 (233)
|+.+-.+|+.-.-...|+.. .++|.+...+.+.+ .+|..+|..-. .|...+|++.|-+| ++
T Consensus 1064 yEEAF~ifkkf~~n~~A~~VLie~i~~ldRA~efAe~~n~p----~vWsqlakAQL~~~~v~dAieSyika-------dD 1132 (1666)
T KOG0985|consen 1064 YEEAFAIFKKFDMNVSAIQVLIENIGSLDRAYEFAERCNEP----AVWSQLAKAQLQGGLVKDAIESYIKA-------DD 1132 (1666)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHhhhHHHHHHHHHhhCCh----HHHHHHHHHHHhcCchHHHHHHHHhc-------CC
Confidence 44444455444444444433 23344444433333 47888999888 68999999988776 33
Q ss_pred hHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHh
Q 026767 84 EQMAFDLYRAATNVYIKLEKYADAATFLLRWGLAAD 119 (233)
Q Consensus 84 ~~~~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~ 119 (233)
+ ..+...-++..+.|.|++=+.++..+....+
T Consensus 1133 p----s~y~eVi~~a~~~~~~edLv~yL~MaRkk~~ 1164 (1666)
T KOG0985|consen 1133 P----SNYLEVIDVASRTGKYEDLVKYLLMARKKVR 1164 (1666)
T ss_pred c----HHHHHHHHHHHhcCcHHHHHHHHHHHHHhhc
Confidence 3 2456677777889999999999988765443
No 432
>KOG4014 consensus Uncharacterized conserved protein (contains TPR repeat) [Function unknown]
Probab=50.56 E-value=1.3e+02 Score=24.02 Aligned_cols=89 Identities=15% Similarity=0.041 Sum_probs=53.4
Q ss_pred HhccHHHHH-HHHHHHHHHHhHccCcchHHHhHHHHHHHHHh-----hCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHH
Q 026767 100 KLEKYADAA-TFLLRWGLAADKCNATNSQCKAYLSAIIVYLY-----ANDFKQAEKCYNDCSQVDAFLRSDQNRCATKLI 173 (233)
Q Consensus 100 ~~g~~~~A~-~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~-----~gd~~~A~~~~~~al~~~~~~~~~e~~~l~~L~ 173 (233)
.+|+|-++| .-|+.|..++...=+..+-+..-+..|.-++. .+++..|.+.+..+.... .+.-++-+.-|.
T Consensus 39 lLgdYlEgi~knF~~A~kv~K~nCden~y~kSCyKyG~y~~~GKgG~~~~l~~a~r~~~~aC~~n---~~~aC~~~gLl~ 115 (248)
T KOG4014|consen 39 LLGDYLEGIQKNFQAAVKVFKKNCDENSYPKSCYKYGMYMLAGKGGDDASLSKAIRPMKIACDAN---IPQACRYLGLLH 115 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccccCCcHHHHHhhhhhhcccCCCccCHHHHHHHHHHHhccC---CHHHHhhhhhhh
Confidence 456666666 45777777777666666666666777766654 357889999999886422 111222211111
Q ss_pred ---HHHhcC--CHHHHHHHHhhc
Q 026767 174 ---SAYTEG--DVEEIKRVAQSS 191 (233)
Q Consensus 174 ---~a~~~g--d~~~a~~~~~~~ 191 (233)
+.=+.+ |.+.++++..++
T Consensus 116 ~~g~~~r~~dpd~~Ka~~y~tra 138 (248)
T KOG4014|consen 116 WNGEKDRKADPDSEKAERYMTRA 138 (248)
T ss_pred ccCcCCccCCCCcHHHHHHHHHh
Confidence 111223 378888888887
No 433
>PF12309 KBP_C: KIF-1 binding protein C terminal; InterPro: IPR022083 This family of proteins is found in bacteria and eukaryotes. Proteins in this family are typically between 365 and 621 amino acids in length. There is a conserved LLP sequence motif. KBP is a binding partner for KIF1Balpha that is a regulator of its transport function and thus represents a type of kinesin interacting protein.
Probab=49.82 E-value=1.8e+02 Score=25.55 Aligned_cols=128 Identities=13% Similarity=0.100 Sum_probs=76.0
Q ss_pred HHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh-h----CCHHHHHHHHHHHHHHHHhcCC--------------hHHH
Q 026767 27 EVADFYRKASELYNECGRSQPASDALAKAARALE-D----AVPEDAIQLYTDACIMLEEDDK--------------EQMA 87 (233)
Q Consensus 27 eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~-~----g~~~~A~~~~~~Al~~~~~~g~--------------~~~~ 87 (233)
.+..++.+|.+.|.--|.......+...++.+|. . .+++.-+...++=+++.+..-+ ....
T Consensus 149 ~~~~~l~~A~~yf~ld~~~t~hv~I~qd~S~lYk~LafFE~~~~r~~kmhkRR~d~Le~~~~~Ln~~~y~~~~rql~fEl 228 (371)
T PF12309_consen 149 NGQKWLNKAKEYFVLDGFVTDHVQILQDISELYKYLAFFEEDPDRQIKMHKRRADLLEPLLKELNPQYYLNLCRQLWFEL 228 (371)
T ss_pred HHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHH
Confidence 3455667777777778888888889999988877 3 7888888888887777665321 1112
Q ss_pred HHHHHHHHHHHHHhcc--------------------HHHHHHHHHHHHHHHhHcc-----------CcchHHHhHHHHHH
Q 026767 88 FDLYRAATNVYIKLEK--------------------YADAATFLLRWGLAADKCN-----------ATNSQCKAYLSAII 136 (233)
Q Consensus 88 ~~~l~~lg~~~~~~g~--------------------~~~A~~~~~~al~~~~~~~-----------~~~~~a~~~~~lg~ 136 (233)
+.++..+-++.....+ ...|+.+|+.-+..+.... ..+..-.+++.+|.
T Consensus 229 ae~~~~i~dlk~~~~~~~~~~~~~~~~~~~~kin~l~~~ai~~y~~fl~s~~~~~~~~~~~~~~~d~~~~~l~a~f~~ar 308 (371)
T PF12309_consen 229 AEIYSEIMDLKLEKLDEPQNDNEPPDDHALKKINQLCSKAIKYYQKFLDSYKSPDSGKLPEKLDEDELRPYLYAYFHIAR 308 (371)
T ss_pred HHHHHHHHHHHHHHhhhhcccCCCCChHHHHHHHHHHHHHHHHHHHHHHHHcCCccccCCCCCcHHHHHHHHHHHHHHHH
Confidence 2333333333333222 2356777777776665321 12233456678888
Q ss_pred HHHhh--CCHHHHHHHHHHh
Q 026767 137 VYLYA--NDFKQAEKCYNDC 154 (233)
Q Consensus 137 ~~~~~--gd~~~A~~~~~~a 154 (233)
+|.+. ++..+=.+.++++
T Consensus 309 l~~K~~~~~~~~~~~~l~~s 328 (371)
T PF12309_consen 309 LYSKLITSDPKEQLENLEKS 328 (371)
T ss_pred HHccccCCChHHHHHHHHHH
Confidence 87665 3443333333333
No 434
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=49.42 E-value=3.5e+02 Score=29.93 Aligned_cols=125 Identities=13% Similarity=-0.032 Sum_probs=85.5
Q ss_pred HHHHHHHHHHHHHHHHHc-CCchHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhc
Q 026767 25 WREVADFYRKASELYNEC-GRSQPASDALAKAARALE-DAVPEDAIQLYTDACIMLEEDDKEQMAFDLYRAATNVYIKLE 102 (233)
Q Consensus 25 ~~eA~~~~~~A~~l~~~~-g~~~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~~~~~~~~l~~lg~~~~~~g 102 (233)
..+-+-.++++.-.-... +-..+.+.+|.+.|.+-. .|+++.|-.+.-.|.+... ..+...-+..+-..|
T Consensus 1645 ~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~nall~A~e~r~--------~~i~~E~AK~lW~~g 1716 (2382)
T KOG0890|consen 1645 IKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRAQNALLNAKESRL--------PEIVLERAKLLWQTG 1716 (2382)
T ss_pred HHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhhhccc--------chHHHHHHHHHHhhc
Confidence 455555666665554444 556788999999999999 7999999998888876542 356777888888999
Q ss_pred cHHHHHHHHHHHHHHHhHccCcc-----------hHHHhHHHHHHHHHhhCC--HHHHHHHHHHhhcC
Q 026767 103 KYADAATFLLRWGLAADKCNATN-----------SQCKAYLSAIIVYLYAND--FKQAEKCYNDCSQV 157 (233)
Q Consensus 103 ~~~~A~~~~~~al~~~~~~~~~~-----------~~a~~~~~lg~~~~~~gd--~~~A~~~~~~al~~ 157 (233)
+...|+..+++.++.+......+ ...++.+.++.-.-..|+ ...-.++|.++.++
T Consensus 1717 d~~~Al~~Lq~~l~~~~~~~~~~~~~~p~~~n~~i~~~~~L~~~~~~~es~n~~s~~ilk~Y~~~~ai 1784 (2382)
T KOG0890|consen 1717 DELNALSVLQEILSKNFPDLHTPYTDTPQSVNLLIFKKAKLKITKYLEESGNFESKDILKYYHDAKAI 1784 (2382)
T ss_pred cHHHHHHHHHHHHHhhcccccCCccccchhhhhhhhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHH
Confidence 99999999999998775541111 112233444444444454 34456677777644
No 435
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=49.25 E-value=1.3e+02 Score=23.76 Aligned_cols=153 Identities=12% Similarity=0.056 Sum_probs=94.3
Q ss_pred HHHHHHHHHcCCchHHHHHHHHHHHH------hh-hCCHHHHHHHHHHHHHHHHhcCCh---------------HHHHHH
Q 026767 33 RKASELYNECGRSQPASDALAKAARA------LE-DAVPEDAIQLYTDACIMLEEDDKE---------------QMAFDL 90 (233)
Q Consensus 33 ~~A~~l~~~~g~~~~~a~~l~~lg~~------~~-~g~~~~A~~~~~~Al~~~~~~g~~---------------~~~~~~ 90 (233)
+++-.++.+.|-.--.+.++.-+|.. |. .+.-.++=..|..|+.+....+.. ..-..+
T Consensus 17 Eq~~~lw~rfgp~v~giailvVlGtag~~gy~yw~~s~as~sgd~flaAL~lA~~~k~d~Alaaf~~lektg~g~YpvLA 96 (221)
T COG4649 17 EQAKTLWKRFGPAVIGIAILVVLGTAGYVGYTYWQTSRASKSGDAFLAALKLAQENKTDDALAAFTDLEKTGYGSYPVLA 96 (221)
T ss_pred HHHHHHHHHcccHHHHHHHHHHhccccceeeehhcccccccchHHHHHHHHHHHcCCchHHHHHHHHHHhcCCCcchHHH
Confidence 55666777777655555555555432 33 366666667777777776654311 111134
Q ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHHHhHccCc-chHHHhHHHHHHHHHhhCCHHHHHHHHHHhhcCCCCCCchHHHHH
Q 026767 91 YRAATNVYIKLEKYADAATFLLRWGLAADKCNAT-NSQCKAYLSAIIVYLYANDFKQAEKCYNDCSQVDAFLRSDQNRCA 169 (233)
Q Consensus 91 l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~-~~~a~~~~~lg~~~~~~gd~~~A~~~~~~al~~~~~~~~~e~~~l 169 (233)
....+.+..+.|+-..|+.+|.++... ...+ ...-.+.+..+.++...|-|+.-....+-.- .-..+-....-
T Consensus 97 ~mr~at~~a~kgdta~AV~aFdeia~d---t~~P~~~rd~ARlraa~lLvD~gsy~dV~srvepLa---~d~n~mR~sAr 170 (221)
T COG4649 97 RMRAATLLAQKGDTAAAVAAFDEIAAD---TSIPQIGRDLARLRAAYLLVDNGSYDDVSSRVEPLA---GDGNPMRHSAR 170 (221)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHhcc---CCCcchhhHHHHHHHHHHHhccccHHHHHHHhhhcc---CCCChhHHHHH
Confidence 567788889999999999999977642 2222 1222345677777888898888776666532 11222334455
Q ss_pred HHHHH-HHhcCCHHHHHHHHhhc
Q 026767 170 TKLIS-AYTEGDVEEIKRVAQSS 191 (233)
Q Consensus 170 ~~L~~-a~~~gd~~~a~~~~~~~ 191 (233)
+.||- ++..||+..|..-+.+-
T Consensus 171 EALglAa~kagd~a~A~~~F~qi 193 (221)
T COG4649 171 EALGLAAYKAGDFAKAKSWFVQI 193 (221)
T ss_pred HHHhHHHHhccchHHHHHHHHHH
Confidence 56665 45899999988776654
No 436
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=47.12 E-value=2.4e+02 Score=26.13 Aligned_cols=76 Identities=9% Similarity=-0.058 Sum_probs=61.8
Q ss_pred ChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH-HhHccCcchHHHhHHHHHHHHHhhCC-HHHHHHHHHHhhcCC
Q 026767 83 KEQMAFDLYRAATNVYIKLEKYADAATFLLRWGLA-ADKCNATNSQCKAYLSAIIVYLYAND-FKQAEKCYNDCSQVD 158 (233)
Q Consensus 83 ~~~~~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~-~~~~~~~~~~a~~~~~lg~~~~~~gd-~~~A~~~~~~al~~~ 158 (233)
+.....--..-+|.++..+|+...|..+|...++- .....+++....+++.++..+..+|. ..++..++.+|....
T Consensus 444 d~Dd~~lk~lL~g~~lR~Lg~~~~a~~~f~i~~~~e~~~~~d~w~~PfA~YElA~l~~~~~g~~~e~~~~L~kAr~~~ 521 (546)
T KOG3783|consen 444 DSDDEGLKYLLKGVILRNLGDSEVAPKCFKIQVEKESKRTEDLWAVPFALYELALLYWDLGGGLKEARALLLKAREYA 521 (546)
T ss_pred CchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhcccChHHHHHHHHHHHhhc
Confidence 45555555667799999999999999999988743 33456778888999999999999999 999999999987443
No 437
>cd09247 BRO1_Alix_like_2 Protein-interacting Bro1-like domain of an Uncharacterized family of the BRO1_Alix_like superfamily. This domain family is comprised of uncharacterized proteins. It belongs to the BRO1_Alix_like superfamily which includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, HD-PTP, Brox, Bro1, Rim20 and Rim23 interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Alix participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also functions in apoptosis. HD-PTP and Bro1 function in
Probab=46.43 E-value=2e+02 Score=24.95 Aligned_cols=50 Identities=12% Similarity=-0.021 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHHHhHccC-----------------cchHHHhHHHHHHHHHhhCCHHHHHHHHHHhh
Q 026767 106 DAATFLLRWGLAADKCNA-----------------TNSQCKAYLSAIIVYLYANDFKQAEKCYNDCS 155 (233)
Q Consensus 106 ~A~~~~~~al~~~~~~~~-----------------~~~~a~~~~~lg~~~~~~gd~~~A~~~~~~al 155 (233)
++.++|++|.......+. ....+.++...|......+++.+|+..++.+.
T Consensus 214 ~~~~~y~~A~~~l~~~~~~~~~i~~~~~~~l~~k~~~~~A~A~~~~a~~~~~~~k~GeaIa~L~~A~ 280 (346)
T cd09247 214 GATQFLEEAKNVLRSLATDLKDLDPRFLRFISSCIALHEARSQLYLARRLKEAGHIGVAVGVLREAL 280 (346)
T ss_pred HHHHHHHHHHHHHHccCcchhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHH
Confidence 566777777766554321 11244555666666767778888888888775
No 438
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=46.08 E-value=2.1e+02 Score=25.17 Aligned_cols=22 Identities=23% Similarity=0.122 Sum_probs=18.5
Q ss_pred HHhccHHHHHHHHHHHHHHHhH
Q 026767 99 IKLEKYADAATFLLRWGLAADK 120 (233)
Q Consensus 99 ~~~g~~~~A~~~~~~al~~~~~ 120 (233)
...|+|+.|+..+=|+++++-+
T Consensus 252 a~~gryddAvarlYR~lEl~~Q 273 (379)
T PF09670_consen 252 AAQGRYDDAVARLYRALELLAQ 273 (379)
T ss_pred HhcCCHHHHHHHHHHHHHHHHH
Confidence 4588999999999999988754
No 439
>PF04010 DUF357: Protein of unknown function (DUF357); InterPro: IPR023140 This domain is found in a family of proteins, which have no known function.; PDB: 2OO2_A 2PMR_A.
Probab=45.15 E-value=43 Score=22.11 Aligned_cols=29 Identities=21% Similarity=0.410 Sum_probs=21.8
Q ss_pred hHHHhHHHHHHHHHhhCCHHHHHHHHHHh
Q 026767 126 SQCKAYLSAIIVYLYANDFKQAEKCYNDC 154 (233)
Q Consensus 126 ~~a~~~~~lg~~~~~~gd~~~A~~~~~~a 154 (233)
..+..|.+=|.-++..||+..|..++.=+
T Consensus 33 ~mA~~Y~~D~~~fl~~gD~v~Ala~~sYa 61 (75)
T PF04010_consen 33 EMAESYLEDGKYFLEKGDYVNALACFSYA 61 (75)
T ss_dssp HHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 34567788888889999999998887654
No 440
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=43.76 E-value=66 Score=26.23 Aligned_cols=21 Identities=14% Similarity=0.072 Sum_probs=12.5
Q ss_pred CCHHHHHHHHHHHHHHHHhcC
Q 026767 62 AVPEDAIQLYTDACIMLEEDD 82 (233)
Q Consensus 62 g~~~~A~~~~~~Al~~~~~~g 82 (233)
+++..|+.++++|+.+....|
T Consensus 192 ~~l~~Al~~L~rA~~l~~k~G 212 (230)
T PHA02537 192 ETLQLALALLQRAFQLNDKCG 212 (230)
T ss_pred ccHHHHHHHHHHHHHhCCCCC
Confidence 455566666666666666555
No 441
>PF07219 HemY_N: HemY protein N-terminus; InterPro: IPR010817 This entry represents the N terminus (approximately 150 residues) of bacterial HemY porphyrin biosynthesis proteins. These are membrane protein involved in a late step of protoheme IX synthesis [].
Probab=42.74 E-value=88 Score=21.94 Aligned_cols=44 Identities=23% Similarity=0.319 Sum_probs=31.0
Q ss_pred hHHHhHHHHHHHHHhhCCHHHHHHHHHHhhcCCCCCCchHHHHHHHHHHH
Q 026767 126 SQCKAYLSAIIVYLYANDFKQAEKCYNDCSQVDAFLRSDQNRCATKLISA 175 (233)
Q Consensus 126 ~~a~~~~~lg~~~~~~gd~~~A~~~~~~al~~~~~~~~~e~~~l~~L~~a 175 (233)
..+...+.-|.+.+..||+.+|++...++.... +...+..|..+
T Consensus 57 ~ka~~al~~Gl~al~~G~~~~A~k~~~~a~~~~------~~~~l~~L~AA 100 (108)
T PF07219_consen 57 RKAQRALSRGLIALAEGDWQRAEKLLAKAAKLS------DNPLLNYLLAA 100 (108)
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC------CCHHHHHHHHH
Confidence 344556888899999999999999999985332 23455555543
No 442
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=42.71 E-value=1.4e+02 Score=25.59 Aligned_cols=61 Identities=21% Similarity=0.178 Sum_probs=45.5
Q ss_pred HHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHh
Q 026767 53 AKAARALE-DAVPEDAIQLYTDACIMLEEDDKEQMAFDLYRAATNVYIKLEKYADAATFLLRWGLAAD 119 (233)
Q Consensus 53 ~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~~~~~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~ 119 (233)
...+..|. .|.+.+|+++.++++.+.+-.. .....+-.++...|+--.++..|++..+..+
T Consensus 283 gkva~~yle~g~~neAi~l~qr~ltldpL~e------~~nk~lm~~la~~gD~is~~khyerya~vle 344 (361)
T COG3947 283 GKVARAYLEAGKPNEAIQLHQRALTLDPLSE------QDNKGLMASLATLGDEISAIKHYERYAEVLE 344 (361)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHhhcChhhh------HHHHHHHHHHHHhccchhhhhHHHHHHHHHH
Confidence 33455555 6999999999999998877433 3455566778889999999999988765543
No 443
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=41.95 E-value=1.5e+02 Score=22.48 Aligned_cols=109 Identities=12% Similarity=0.057 Sum_probs=63.3
Q ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHccCcchHHHhHHHHHHHHHhhCCHHHHHHHHHHhhcCCCCCCchHHHH
Q 026767 89 DLYRAATNVYIKLEKYADAATFLLRWGLAADKCNATNSQCKAYLSAIIVYLYANDFKQAEKCYNDCSQVDAFLRSDQNRC 168 (233)
Q Consensus 89 ~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~gd~~~A~~~~~~al~~~~~~~~~e~~~ 168 (233)
..+..+..+-...++.+++..++...- +. ++.....-.--|.+|...|++.+|+..|++...... .+.-+..
T Consensus 11 ~gLi~~~~~aL~~~d~~D~e~lLdALr-vL-----rP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~--~~p~~kA 82 (153)
T TIGR02561 11 GGLIEVLMYALRSADPYDAQAMLDALR-VL-----RPNLKELDMFDGWLLIARGNYDEAARILRELLSSAG--APPYGKA 82 (153)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHH-Hh-----CCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCC--CchHHHH
Confidence 455666666677899999888877443 32 233333456788999999999999999999753321 1233343
Q ss_pred HHHHHHHHhcCCHHHHHHHHhhcccccchHHHHHHhccC
Q 026767 169 ATKLISAYTEGDVEEIKRVAQSSAISNLDHVIIKLARKL 207 (233)
Q Consensus 169 l~~L~~a~~~gd~~~a~~~~~~~~~~~ld~~~~~l~~~l 207 (233)
|..+. .+..||.+ .+.+-.+.+-..-++....|.+.+
T Consensus 83 L~A~C-L~al~Dp~-Wr~~A~~~le~~~~~~a~~Lv~al 119 (153)
T TIGR02561 83 LLALC-LNAKGDAE-WHVHADEVLARDADADAVALVRAL 119 (153)
T ss_pred HHHHH-HHhcCChH-HHHHHHHHHHhCCCHhHHHHHHHH
Confidence 33322 11456542 222222223444455555555554
No 444
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=41.75 E-value=3.1e+02 Score=25.89 Aligned_cols=21 Identities=14% Similarity=0.161 Sum_probs=10.7
Q ss_pred HHhhCCHHHHHHHHHHhhcCC
Q 026767 138 YLYANDFKQAEKCYNDCSQVD 158 (233)
Q Consensus 138 ~~~~gd~~~A~~~~~~al~~~ 158 (233)
+...|++.+|++.+++.--+|
T Consensus 515 ~~~~g~~~~AL~~i~~L~liP 535 (613)
T PF04097_consen 515 LYHAGQYEQALDIIEKLDLIP 535 (613)
T ss_dssp HHHTT-HHHHHHHHHHTT-S-
T ss_pred HHHcCCHHHHHHHHHhCCCCC
Confidence 344566777766666654334
No 445
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=41.40 E-value=3.1e+02 Score=25.81 Aligned_cols=185 Identities=11% Similarity=0.052 Sum_probs=107.6
Q ss_pred CCHHHHHHHHHHHHHHHHHcC------CchHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhc---------C----
Q 026767 23 HNWREVADFYRKASELYNECG------RSQPASDALAKAARALE-DAVPEDAIQLYTDACIMLEED---------D---- 82 (233)
Q Consensus 23 g~~~eA~~~~~~A~~l~~~~g------~~~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~---------g---- 82 (233)
..|++|...|.-|...+.-.+ +..-....+..++.++. +|+.+.|....++++=.+... |
T Consensus 252 ~sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cRL 331 (665)
T KOG2422|consen 252 NSYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCRL 331 (665)
T ss_pred hHHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhccccccccccccC
Confidence 346677777777766654221 22345677888999999 899999999999998776642 1
Q ss_pred -----ChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHccCcchHHHhHHHHHHHHHhhCCHHHHHHHHHHhhcC
Q 026767 83 -----KEQMAFDLYRAATNVYIKLEKYADAATFLLRWGLAADKCNATNSQCKAYLSAIIVYLYANDFKQAEKCYNDCSQV 157 (233)
Q Consensus 83 -----~~~~~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~gd~~~A~~~~~~al~~ 157 (233)
..+.-..++...-..+.+.|-+..|.+++.-.+.+ .-..++.+ +.+-|=...++..+|.--++.++..-..
T Consensus 332 ~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsL-dp~eDPl~---~l~~ID~~ALrareYqwiI~~~~~~e~~ 407 (665)
T KOG2422|consen 332 PYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSL-DPSEDPLG---ILYLIDIYALRAREYQWIIELSNEPENM 407 (665)
T ss_pred cccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhc-CCcCCchh---HHHHHHHHHHHHHhHHHHHHHHHHHHhh
Confidence 12333457777777888899999999999876654 12223332 2333334446667888888877776322
Q ss_pred CCCCCchHHHHHHHHHHHHhcCCH----HHHHHHHhhcccccchHHHHHHhccCCCCch
Q 026767 158 DAFLRSDQNRCATKLISAYTEGDV----EEIKRVAQSSAISNLDHVIIKLARKLPTGDV 212 (233)
Q Consensus 158 ~~~~~~~e~~~l~~L~~a~~~gd~----~~a~~~~~~~~~~~ld~~~~~l~~~l~~~~~ 212 (233)
.........-.-..|+..|-.++. ..|...+.++ ++..+.-...|...+..++.
T Consensus 408 n~l~~~PN~~yS~AlA~f~l~~~~~~~rqsa~~~l~qA-l~~~P~vl~eLld~~~l~~d 465 (665)
T KOG2422|consen 408 NKLSQLPNFGYSLALARFFLRKNEEDDRQSALNALLQA-LKHHPLVLSELLDELLLGDD 465 (665)
T ss_pred ccHhhcCCchHHHHHHHHHHhcCChhhHHHHHHHHHHH-HHhCcHHHHHHHHhccCCch
Confidence 111111112233345555533333 3344444444 23333445556665555543
No 446
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=40.91 E-value=91 Score=19.53 Aligned_cols=25 Identities=20% Similarity=0.267 Sum_probs=15.6
Q ss_pred HHHHHHHHHhhCCHHHHHHHHHHhh
Q 026767 131 YLSAIIVYLYANDFKQAEKCYNDCS 155 (233)
Q Consensus 131 ~~~lg~~~~~~gd~~~A~~~~~~al 155 (233)
...+..-++.+|++++|.++..+..
T Consensus 26 hLqvI~gllqlg~~~~a~eYi~~~~ 50 (62)
T PF14689_consen 26 HLQVIYGLLQLGKYEEAKEYIKELS 50 (62)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 4555555667777777777776653
No 447
>COG1849 Uncharacterized protein conserved in archaea [Function unknown]
Probab=39.84 E-value=1.2e+02 Score=20.80 Aligned_cols=28 Identities=14% Similarity=0.230 Sum_probs=21.4
Q ss_pred HHHhHHHHHHHHHhhCCHHHHHHHHHHh
Q 026767 127 QCKAYLSAIIVYLYANDFKQAEKCYNDC 154 (233)
Q Consensus 127 ~a~~~~~lg~~~~~~gd~~~A~~~~~~a 154 (233)
.+..|+.=+.-++..||+..|..++.=+
T Consensus 40 ma~~Y~~Dakyf~ekGD~vtAfa~~sYa 67 (90)
T COG1849 40 MAESYFEDAKYFLEKGDYVTAFAALSYA 67 (90)
T ss_pred HHHHHHHHHHHHHHcCcHHHHHHHHHHH
Confidence 3455666777788899999999887755
No 448
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=39.48 E-value=75 Score=31.05 Aligned_cols=57 Identities=16% Similarity=0.128 Sum_probs=30.4
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHH
Q 026767 14 SAAALAKELHNWREVADFYRKASELYNECGRSQPASDALAKAARALE-DAVPEDAIQLYTDACIMLE 79 (233)
Q Consensus 14 ~~g~~~~~~g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~ 79 (233)
.+-.+|.+.|+|++|+++.... |...=.++..-|..+. .++|..|.++|-+.++-|+
T Consensus 363 ~vWk~yLd~g~y~kAL~~ar~~---------p~~le~Vl~~qAdf~f~~k~y~~AA~~yA~t~~~FE 420 (911)
T KOG2034|consen 363 DVWKTYLDKGEFDKALEIARTR---------PDALETVLLKQADFLFQDKEYLRAAEIYAETLSSFE 420 (911)
T ss_pred HHHHHHHhcchHHHHHHhccCC---------HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhHH
Confidence 3445566666666665543322 4444555555555555 4655555555555544444
No 449
>PRK12798 chemotaxis protein; Reviewed
Probab=39.47 E-value=2.8e+02 Score=24.82 Aligned_cols=76 Identities=13% Similarity=0.053 Sum_probs=45.6
Q ss_pred cchHHHhHHHHHHHHHhhCCHHHHHHHHHHhhcCCCCC--CchHHHHHHHHHHHHhcCCHHHHHHHHhhc---ccccchH
Q 026767 124 TNSQCKAYLSAIIVYLYANDFKQAEKCYNDCSQVDAFL--RSDQNRCATKLISAYTEGDVEEIKRVAQSS---AISNLDH 198 (233)
Q Consensus 124 ~~~~a~~~~~lg~~~~~~gd~~~A~~~~~~al~~~~~~--~~~e~~~l~~L~~a~~~gd~~~a~~~~~~~---~~~~ld~ 198 (233)
+..+-..|+.++..-+-.|+..-|.-.-++++.+..-. ....+.+....... -..+.+.+.+.+.+- .+..-|.
T Consensus 253 ~~~q~~lYL~iAR~Ali~Gk~~lA~~As~~A~~L~~~~~~~~~ra~LY~aaa~v-~s~~~~~al~~L~~I~~~~L~~~Dr 331 (421)
T PRK12798 253 PERQRELYLRIARAALIDGKTELARFASERALKLADPDSADAARARLYRGAALV-ASDDAESALEELSQIDRDKLSERDR 331 (421)
T ss_pred chhHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHhccCCCcchHHHHHHHHHHcc-CcccHHHHHHHHhcCChhhCChhhH
Confidence 34445577888888888899988888888888554322 22223233222222 356677777777765 4444455
Q ss_pred HH
Q 026767 199 VI 200 (233)
Q Consensus 199 ~~ 200 (233)
..
T Consensus 332 ~L 333 (421)
T PRK12798 332 AL 333 (421)
T ss_pred HH
Confidence 43
No 450
>PF02064 MAS20: MAS20 protein import receptor; InterPro: IPR002056 Virtually all mitochondrial precursors are imported via the same mechanism []: precursors first bind to receptors on the mitochondrial surface, then insert into the translocation channel in the outer membrane. Many outer-membrane proteins participate in the early stages of import, four of which (MAS20, MAS22, MAS37 and MAS70) are components of the receptor. MAS20, which forms a subcomplex with MAS22, seems to interact with most or all mitochondrial precursors, suggesting that the protein binds directly to mitochondrial targeting sequences. The MAS37 and MAS70 components also form a subcomplex, the two subcomplexes possibly binding via their trans- membrane (TM) regions - the TM region of MAS70 promotes oligomerisation of attatched protein domains and shares sequence similarity with the TM region of MAS20 []. MAS20 is also known as TOM20.; GO: 0006605 protein targeting, 0006886 intracellular protein transport, 0005742 mitochondrial outer membrane translocase complex; PDB: 3AX3_A 3AWR_B 2V1S_A 3AX5_C 3AX2_C 1OM2_A 2V1T_B.
Probab=37.70 E-value=41 Score=24.47 Aligned_cols=27 Identities=11% Similarity=0.043 Sum_probs=21.4
Q ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHH
Q 026767 92 RAATNVYIKLEKYADAATFLLRWGLAA 118 (233)
Q Consensus 92 ~~lg~~~~~~g~~~~A~~~~~~al~~~ 118 (233)
..+|+.++..|++++|..+|-.|+.+|
T Consensus 67 V~lGE~L~~~G~~~~aa~hf~nAl~V~ 93 (121)
T PF02064_consen 67 VQLGEQLLAQGDYEEAAEHFYNALKVC 93 (121)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHTS
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHhC
Confidence 457888888899999999998888765
No 451
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=37.15 E-value=3.4e+02 Score=27.89 Aligned_cols=81 Identities=17% Similarity=0.192 Sum_probs=48.8
Q ss_pred HHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhCCHHHH------------HHHHHHHHHHHHhcCChHHHHHHHHH
Q 026767 26 REVADFYRKASELYNECGRSQPASDALAKAARALEDAVPEDA------------IQLYTDACIMLEEDDKEQMAFDLYRA 93 (233)
Q Consensus 26 ~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~~g~~~~A------------~~~~~~Al~~~~~~g~~~~~~~~l~~ 93 (233)
..|++||.++++++++.|-+......-..+-......++..| +.++-+|.+...+..+....-.|+..
T Consensus 980 ~t~lhYYlkv~rlle~hn~~E~vcQlA~~AIe~l~dd~ps~a~~~t~vFnhhldlgh~~qAy~ai~~npdserrrdcLRq 1059 (1480)
T KOG4521|consen 980 LTALHYYLKVVRLLEEHNHAEEVCQLAVKAIENLPDDNPSVALISTTVFNHHLDLGHWFQAYKAILRNPDSERRRDCLRQ 1059 (1480)
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHhhhchhhHHHHHHHHHcCCcHHHHHHHHHH
Confidence 357899999999999888887666543333222221222222 24455555555555544444468888
Q ss_pred HHHHHHHhccHHH
Q 026767 94 ATNVYIKLEKYAD 106 (233)
Q Consensus 94 lg~~~~~~g~~~~ 106 (233)
+-.++.+.|+..-
T Consensus 1060 lvivLfecg~l~~ 1072 (1480)
T KOG4521|consen 1060 LVIVLFECGELEA 1072 (1480)
T ss_pred HHHHHHhccchHH
Confidence 8888887776643
No 452
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=36.96 E-value=2.1e+02 Score=26.76 Aligned_cols=89 Identities=17% Similarity=0.058 Sum_probs=0.0
Q ss_pred HhhhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHccCcchHHHhHHHHHHH
Q 026767 58 ALEDAVPEDAIQLYTDACIMLEEDDKEQMAFDLYRAATNVYIKLEKYADAATFLLRWGLAADKCNATNSQCKAYLSAIIV 137 (233)
Q Consensus 58 ~~~~g~~~~A~~~~~~Al~~~~~~g~~~~~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~ 137 (233)
.++.+....++..|.+++.... ....+|.+-+.++.+.+=...+...+. ............-++++.+..+
T Consensus 384 ~ly~~~~~~~i~~~s~a~q~~~------~~~~~l~nraa~lmkRkW~~d~~~Alr---Dch~Alrln~s~~kah~~la~a 454 (758)
T KOG1310|consen 384 GLYESIVSGAISHYSRAIQYVP------DAIYLLENRAAALMKRKWRGDSYLALR---DCHVALRLNPSIQKAHFRLARA 454 (758)
T ss_pred hhhhHHHHHHHHHHHHHhhhcc------chhHHHHhHHHHHHhhhccccHHHHHH---hHHhhccCChHHHHHHHHHHHH
Q ss_pred HHhhCCHHHHHHHHHHhh
Q 026767 138 YLYANDFKQAEKCYNDCS 155 (233)
Q Consensus 138 ~~~~gd~~~A~~~~~~al 155 (233)
...++++.+|+.+...+.
T Consensus 455 L~el~r~~eal~~~~alq 472 (758)
T KOG1310|consen 455 LNELTRYLEALSCHWALQ 472 (758)
T ss_pred HHHHhhHHHhhhhHHHHh
No 453
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=36.94 E-value=2e+02 Score=22.27 Aligned_cols=30 Identities=17% Similarity=0.096 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHh
Q 026767 90 LYRAATNVYIKLEKYADAATFLLRWGLAAD 119 (233)
Q Consensus 90 ~l~~lg~~~~~~g~~~~A~~~~~~al~~~~ 119 (233)
++.+++.++..+|+.++|....+++..++.
T Consensus 146 ~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP 175 (193)
T PF11846_consen 146 VYQRYALALALLGDPEEARQWLARARRLYP 175 (193)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 344455555555555555555555554444
No 454
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=36.80 E-value=3.8e+02 Score=26.14 Aligned_cols=25 Identities=16% Similarity=0.351 Sum_probs=17.0
Q ss_pred HHHHHHHHHhhCCHHHHHHHHHHhh
Q 026767 131 YLSAIIVYLYANDFKQAEKCYNDCS 155 (233)
Q Consensus 131 ~~~lg~~~~~~gd~~~A~~~~~~al 155 (233)
|++++.|+..+.|...+...+++.+
T Consensus 213 y~~vc~c~v~Ldd~~~va~ll~kL~ 237 (929)
T KOG2062|consen 213 YFSVCQCYVFLDDAEAVADLLEKLV 237 (929)
T ss_pred eeeeeeeeEEcCCHHHHHHHHHHHH
Confidence 4566666777777777777776654
No 455
>smart00101 14_3_3 14-3-3 homologues. 14-3-3 homologues mediates signal transduction by binding to phosphoserine-containing proteins. They are involved in growth factor signalling and also interact with MEK kinases.
Probab=36.71 E-value=2.4e+02 Score=23.21 Aligned_cols=54 Identities=13% Similarity=-0.095 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHHHHh-cC--ChHHHHHHHHHHHHHHH-HhccHHHHHHHHHHHHHHH
Q 026767 64 PEDAIQLYTDACIMLEE-DD--KEQMAFDLYRAATNVYI-KLEKYADAATFLLRWGLAA 118 (233)
Q Consensus 64 ~~~A~~~~~~Al~~~~~-~g--~~~~~~~~l~~lg~~~~-~~g~~~~A~~~~~~al~~~ 118 (233)
.+.|.+.|+.|.++... .. ++--.+.+ .|.+.+|. -+++.++|+...+++..-+
T Consensus 144 ~~~a~~aY~~A~e~a~~~L~pt~PirLgLa-LN~SVF~yEI~~~~~~A~~lAk~afd~A 201 (244)
T smart00101 144 AENTLVAYKSAQDIALAELPPTHPIRLGLA-LNFSVFYYEILNSPDRACNLAKQAFDEA 201 (244)
T ss_pred HHHHHHHHHHHHHHHHccCCCCCHHHHHHH-HHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 34778888888888665 22 44444433 34444444 4588888887777666543
No 456
>KOG1497 consensus COP9 signalosome, subunit CSN4 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=36.27 E-value=2.9e+02 Score=24.02 Aligned_cols=108 Identities=19% Similarity=0.153 Sum_probs=68.1
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH--HHcCCchHHHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCC
Q 026767 7 DAAKHMESAAALAKELHNWREVADFYRKASELY--NECGRSQPASDALAKAARALE-DAVPEDAIQLYTDACIMLEEDDK 83 (233)
Q Consensus 7 ~~a~~~~~~g~~~~~~g~~~eA~~~~~~A~~l~--~~~g~~~~~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~ 83 (233)
.++..-..++.+|-.-++|..|..... ++.+. ....|...-...+.++|.+|. .++..+|..+.-|+.-+.....+
T Consensus 101 qv~~irl~LAsiYE~Eq~~~~aaq~L~-~I~~~tg~~~~d~~~kl~l~iriarlyLe~~d~veae~~inRaSil~a~~~N 179 (399)
T KOG1497|consen 101 QVASIRLHLASIYEKEQNWRDAAQVLV-GIPLDTGQKAYDVEQKLLLCIRIARLYLEDDDKVEAEAYINRASILQAESSN 179 (399)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHh-ccCcccchhhhhhHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhhcccC
Confidence 345556677788877777777655432 11111 122333445556778899988 78899999988888766665555
Q ss_pred hHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Q 026767 84 EQMAFDLYRAATNVYIKLEKYADAATFLLRWG 115 (233)
Q Consensus 84 ~~~~~~~l~~lg~~~~~~g~~~~A~~~~~~al 115 (233)
.......-.-.++++-..+++-+|...|-+..
T Consensus 180 e~Lqie~kvc~ARvlD~krkFlEAAqrYyels 211 (399)
T KOG1497|consen 180 EQLQIEYKVCYARVLDYKRKFLEAAQRYYELS 211 (399)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44433333445666667788888777776543
No 457
>PF10607 CLTH: CTLH/CRA C-terminal to LisH motif domain; InterPro: IPR019589 This entry represents the CRA (or CT11-RanBPM) domain, which is a protein-protein interaction domain present in crown eukaryotes (plants, animals, fungi) and which is found in Ran-binding proteins such as Ran-binding protein 9 (RanBP9 or RanBPM) and RanBP10. RanBPM is a scaffolding protein important in regulating cellular function in both the immune system and the nervous system, and may act as an adapter protein to couple membrane receptors to intracellular signaling pathways. This domain is at the C terminus of the proteins and is the binding domain for the CRA motif, which is comprised of approximately 100 amino acids at the C-terminal of RanBPM. It was found to be important for the interaction of RanBPM with fragile X mental retardation protein (FMRP), but its functional significance has yet to be determined [].
Probab=35.97 E-value=1.6e+02 Score=21.43 Aligned_cols=55 Identities=7% Similarity=-0.086 Sum_probs=29.2
Q ss_pred HcCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhCCHHHHHHHHHHHH
Q 026767 21 ELHNWREVADFYRKASELYNECGRSQPASDALAKAARALEDAVPEDAIQLYTDAC 75 (233)
Q Consensus 21 ~~g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~~g~~~~A~~~~~~Al 75 (233)
..|+.++|+++.++--.-..+.+..-.----..+.-.+...|+..+|++|.++-+
T Consensus 13 ~~g~i~~Ai~w~~~~~~~l~~~~~~L~f~L~~q~fiell~~~~~~~Ai~y~r~~l 67 (145)
T PF10607_consen 13 LNGDIDPAIEWLNENFPELLKRNSSLEFELRCQQFIELLREGDIMEAIEYARKHL 67 (145)
T ss_pred HcCCHHHHHHHHHHcCHHHHhcCCchhHHHHHHHHHHHHHHHhHHHHHHHHHHHh
Confidence 3677777777776655544444433222222223333333466667776666633
No 458
>PF10938 YfdX: YfdX protein; InterPro: IPR021236 YfdX is a protein found in Proteobacteria of unknown function. The protein coding for this gene is regulated by EvgA in Escherichia coli []. ; PDB: 3DZA_C.
Probab=35.64 E-value=1.9e+02 Score=21.83 Aligned_cols=102 Identities=16% Similarity=0.067 Sum_probs=54.5
Q ss_pred HHHHHhh-hCCHHHHHHHHHHHHHHHHhcC-------------------------------C--hHHHHHHHHHHHHHHH
Q 026767 54 KAARALE-DAVPEDAIQLYTDACIMLEEDD-------------------------------K--EQMAFDLYRAATNVYI 99 (233)
Q Consensus 54 ~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g-------------------------------~--~~~~~~~l~~lg~~~~ 99 (233)
..+.... .|++++|.....+|...+.... . ...........+.-++
T Consensus 7 ~~Ar~aL~~g~~~~A~~~L~~A~~~l~~~~~~~p~~~~~~~~~~~~~~~~iPI~~~~~v~d~~~~~~~~~~ai~~a~~~l 86 (155)
T PF10938_consen 7 QKARLALFQGDTDEAKKLLEDAQGKLDAARADDPKLAKAEKILPPAKDDLIPIDAEVIVIDDYVPTPEKKAAIKTANELL 86 (155)
T ss_dssp HHHHHHHCTT-HHHHHHHHHHHHHHHTS-HHHHHCCB-TT-S--SSSS-EEEEEEEEEEE------HHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHhcChHhHhhhhccccCCCceEEEeeEEEEeeccCChHHHHHHHHHHHHHH
Confidence 3344444 5777777777777776665221 0 1222344555666677
Q ss_pred HhccHHHHHHHHHHHHHHH--hHccCcchHHHhHHHHHHHHHhhCCHHHHHHHHHHhh
Q 026767 100 KLEKYADAATFLLRWGLAA--DKCNATNSQCKAYLSAIIVYLYANDFKQAEKCYNDCS 155 (233)
Q Consensus 100 ~~g~~~~A~~~~~~al~~~--~~~~~~~~~a~~~~~lg~~~~~~gd~~~A~~~~~~al 155 (233)
+.|+...|.+.++-+..-. .....+-.........+..++..|++.+|...+..++
T Consensus 87 ~~g~~~~A~~~L~~~~~ei~~~~~~lPL~~~~~av~~A~~ll~~~k~~eA~~aL~~A~ 144 (155)
T PF10938_consen 87 KKGDKQAAREILKLAGSEIDITTALLPLAQTPAAVKQAAALLDEGKYYEANAALKQAL 144 (155)
T ss_dssp HTT-HHHHHHHHHHTT-EEEEEEEEEEHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred hCCCHHHHHHHHHHhcccceeeeeeCCHHhhHHHHHHHHHHHHCCCHHHHHHHHHHHh
Confidence 7777777777666443200 0001122233334566677777788888877777765
No 459
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=35.46 E-value=2.1e+02 Score=22.12 Aligned_cols=55 Identities=7% Similarity=-0.012 Sum_probs=38.4
Q ss_pred HhccHHHHHHHHHHHHHHHhHccCcchHHHhHHHHHHHHHhhCCHHHHHHHHHHhhcCC
Q 026767 100 KLEKYADAATFLLRWGLAADKCNATNSQCKAYLSAIIVYLYANDFKQAEKCYNDCSQVD 158 (233)
Q Consensus 100 ~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~gd~~~A~~~~~~al~~~ 158 (233)
...+-.....+.+.+....+...+.. ++.+.+.++...|+.++|....+++....
T Consensus 120 ~~~~~~~l~~~~~~a~~~l~~~P~~~----~~~~~a~~l~~~G~~~eA~~~~~~~~~ly 174 (193)
T PF11846_consen 120 LPPDPEMLEAYIEWAERLLRRRPDPN----VYQRYALALALLGDPEEARQWLARARRLY 174 (193)
T ss_pred CCCCHHHHHHHHHHHHHHHHhCCCHH----HHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 34444444444455555555566664 57788999999999999999999988543
No 460
>KOG2709 consensus Uncharacterized conserved protein [Function unknown]
Probab=35.09 E-value=64 Score=28.83 Aligned_cols=32 Identities=16% Similarity=0.162 Sum_probs=17.7
Q ss_pred HHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHh
Q 026767 49 SDALAKAARALE-DAVPEDAIQLYTDACIMLEE 80 (233)
Q Consensus 49 a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~ 80 (233)
|.+..+.|.+|. .++.++|+.+|++++.+..+
T Consensus 22 A~~~V~~gl~~dE~~~~e~a~~~Ye~gl~~i~~ 54 (560)
T KOG2709|consen 22 AYASVEQGLCYDEVNDWENALAMYEKGLNLIVE 54 (560)
T ss_pred HHHHHHhhcchhhhcCHHHHHHHHHHHHHHHHh
Confidence 344455555555 45555555555555555554
No 461
>cd09245 BRO1_UmRIM23-like Protein-interacting, Bro1-like domain of Ustilago maydis Rim23 (PalC), and related domains. This family contains the Bro1-like domain of Ustilago maydis Rim23 (also known as PalC), and related proteins. It belongs to the BRO1_Alix_like superfamily which includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, and related domains. Alix, HD-PTP, Brox, Bro1, Rim20, and Rim23 interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Rim20 and Rim23 participate in the response to the external pH via the Rim101 pathway. Through its Bro1-like domain, Rim23 allows the interaction between the endosomal and plasma membrane complexes. Bro1-like domains are boomerang-shape, and part of the domain is a tetratricop
Probab=33.95 E-value=2e+02 Score=25.64 Aligned_cols=36 Identities=8% Similarity=-0.148 Sum_probs=26.7
Q ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHccCc
Q 026767 89 DLYRAATNVYIKLEKYADAATFLLRWGLAADKCNAT 124 (233)
Q Consensus 89 ~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 124 (233)
.++..+|......+++.+|+..++.+..........
T Consensus 297 ~A~~~~g~d~~e~~k~GeaIa~L~~A~~~L~~~~~~ 332 (413)
T cd09245 297 LACKFLGIDAGENGKVGEAIGWLRAAKKELEDLKSP 332 (413)
T ss_pred HHHHHHHHhhHhcCCHHHHHHHHHHHHHHHHHhhhc
Confidence 456666777777888899999999988876555543
No 462
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=33.95 E-value=4.8e+02 Score=26.07 Aligned_cols=40 Identities=13% Similarity=0.004 Sum_probs=30.0
Q ss_pred HHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Q 026767 72 TDACIMLEEDDKEQMAFDLYRAATNVYIKLEKYADAATFLLRWG 115 (233)
Q Consensus 72 ~~Al~~~~~~g~~~~~~~~l~~lg~~~~~~g~~~~A~~~~~~al 115 (233)
+-|++.....++. .+...||..-+.+|+..=|..+|++-.
T Consensus 660 e~ale~akkldd~----d~w~rLge~Al~qgn~~IaEm~yQ~~k 699 (1202)
T KOG0292|consen 660 EVALEAAKKLDDK----DVWERLGEEALRQGNHQIAEMCYQRTK 699 (1202)
T ss_pred HHHHHHHHhcCcH----HHHHHHHHHHHHhcchHHHHHHHHHhh
Confidence 4555556666654 578889999999999988888888754
No 463
>KOG1953 consensus Targeting complex (TRAPP) subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=33.83 E-value=32 Score=34.02 Aligned_cols=49 Identities=12% Similarity=-0.012 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 026767 48 ASDALAKAARALE-DAVPEDAIQLYTDACIMLEEDDKEQMAFDLYRAATN 96 (233)
Q Consensus 48 ~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~~~~~~~~l~~lg~ 96 (233)
.+++.+.+|..+. .|++..|+++|.-|+++.+..||.-+.+.+|.....
T Consensus 244 LGR~~Kq~gdy~LLAGrpvdAl~~fs~AIe~lk~t~DyLWlg~AldG~tV 293 (1235)
T KOG1953|consen 244 LGRIEKQFGDYYLLAGRPVDALKHFSTAIELLKATGDYLWLGLALDGFTV 293 (1235)
T ss_pred HHHHHHhhcceeeecCCchHHHHHHHHHHHHHHhhhhheeehhhccchhH
Confidence 3455566677777 699999999999999999999988777766655333
No 464
>cd09243 BRO1_Brox_like Protein-interacting Bro1-like domain of human Brox1 and related proteins. This family contains the Bro1-like domain of a single-domain protein, human Brox, and related domains. It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, HD-PTP, Brox, Bro1, Rim20, and Rim23, interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Bro1-like domains are boomerang-shaped, and part of the domain is a tetratricopeptide repeat (TPR)-like structure. Bro1-like domains bind components of the ESCRT-III complex: CHMP4 in the case of Brox. Human Brox can bind to human immunodeficiency virus type 1 (
Probab=33.37 E-value=2.4e+02 Score=24.61 Aligned_cols=14 Identities=21% Similarity=0.283 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHH
Q 026767 66 DAIQLYTDACIMLE 79 (233)
Q Consensus 66 ~A~~~~~~Al~~~~ 79 (233)
++.++|++|.+...
T Consensus 212 q~a~~Y~~A~~~l~ 225 (353)
T cd09243 212 ETAKLFQKADDSLS 225 (353)
T ss_pred HHHHHHHHHHHHHH
Confidence 34445555555544
No 465
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=33.31 E-value=90 Score=30.54 Aligned_cols=51 Identities=8% Similarity=0.031 Sum_probs=27.4
Q ss_pred HHhh-hCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Q 026767 57 RALE-DAVPEDAIQLYTDACIMLEEDDKEQMAFDLYRAATNVYIKLEKYADAATFLLRWGL 116 (233)
Q Consensus 57 ~~~~-~g~~~~A~~~~~~Al~~~~~~g~~~~~~~~l~~lg~~~~~~g~~~~A~~~~~~al~ 116 (233)
.+|. .|+|++|+++.+.. +...-.++...|+.+.+.++|..|.++|-+...
T Consensus 366 k~yLd~g~y~kAL~~ar~~---------p~~le~Vl~~qAdf~f~~k~y~~AA~~yA~t~~ 417 (911)
T KOG2034|consen 366 KTYLDKGEFDKALEIARTR---------PDALETVLLKQADFLFQDKEYLRAAEIYAETLS 417 (911)
T ss_pred HHHHhcchHHHHHHhccCC---------HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhh
Confidence 4455 46655555544433 111224566666666666666666666655444
No 466
>PF02064 MAS20: MAS20 protein import receptor; InterPro: IPR002056 Virtually all mitochondrial precursors are imported via the same mechanism []: precursors first bind to receptors on the mitochondrial surface, then insert into the translocation channel in the outer membrane. Many outer-membrane proteins participate in the early stages of import, four of which (MAS20, MAS22, MAS37 and MAS70) are components of the receptor. MAS20, which forms a subcomplex with MAS22, seems to interact with most or all mitochondrial precursors, suggesting that the protein binds directly to mitochondrial targeting sequences. The MAS37 and MAS70 components also form a subcomplex, the two subcomplexes possibly binding via their trans- membrane (TM) regions - the TM region of MAS70 promotes oligomerisation of attatched protein domains and shares sequence similarity with the TM region of MAS20 []. MAS20 is also known as TOM20.; GO: 0006605 protein targeting, 0006886 intracellular protein transport, 0005742 mitochondrial outer membrane translocase complex; PDB: 3AX3_A 3AWR_B 2V1S_A 3AX5_C 3AX2_C 1OM2_A 2V1T_B.
Probab=33.16 E-value=94 Score=22.62 Aligned_cols=26 Identities=15% Similarity=0.121 Sum_probs=13.0
Q ss_pred HHHHhh-hCCHHHHHHHHHHHHHHHHh
Q 026767 55 AARALE-DAVPEDAIQLYTDACIMLEE 80 (233)
Q Consensus 55 lg~~~~-~g~~~~A~~~~~~Al~~~~~ 80 (233)
+|..+. .|++++|..+|-+|+..+.+
T Consensus 69 lGE~L~~~G~~~~aa~hf~nAl~V~~q 95 (121)
T PF02064_consen 69 LGEQLLAQGDYEEAAEHFYNALKVCPQ 95 (121)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHHTSSS
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHhCCC
Confidence 444444 45555555555555555543
No 467
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=32.64 E-value=83 Score=27.12 Aligned_cols=16 Identities=31% Similarity=0.540 Sum_probs=6.6
Q ss_pred cCCHHHHHHHHHHHHH
Q 026767 22 LHNWREVADFYRKASE 37 (233)
Q Consensus 22 ~g~~~eA~~~~~~A~~ 37 (233)
.++|.+|..+|+-|++
T Consensus 23 a~nY~eA~~lY~~ale 38 (439)
T KOG0739|consen 23 AKNYEEALRLYQNALE 38 (439)
T ss_pred hhchHHHHHHHHHHHH
Confidence 3344444444444433
No 468
>cd09245 BRO1_UmRIM23-like Protein-interacting, Bro1-like domain of Ustilago maydis Rim23 (PalC), and related domains. This family contains the Bro1-like domain of Ustilago maydis Rim23 (also known as PalC), and related proteins. It belongs to the BRO1_Alix_like superfamily which includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, and related domains. Alix, HD-PTP, Brox, Bro1, Rim20, and Rim23 interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Rim20 and Rim23 participate in the response to the external pH via the Rim101 pathway. Through its Bro1-like domain, Rim23 allows the interaction between the endosomal and plasma membrane complexes. Bro1-like domains are boomerang-shape, and part of the domain is a tetratricop
Probab=32.23 E-value=2.3e+02 Score=25.27 Aligned_cols=37 Identities=14% Similarity=0.183 Sum_probs=27.1
Q ss_pred ChHHHHHHHHHHHHHHHHcC--------------------------CHHHHHHHHHHHHHHHH
Q 026767 4 SPWDAAKHMESAAALAKELH--------------------------NWREVADFYRKASELYN 40 (233)
Q Consensus 4 ~~~~~a~~~~~~g~~~~~~g--------------------------~~~eA~~~~~~A~~l~~ 40 (233)
-.+..+.++.++|.+|.+.+ .+..|..++.+|.-+|.
T Consensus 112 l~fE~a~VLfnla~l~S~~A~~~l~~~~~~~~~~~is~~~~~~~~e~lK~A~~~l~~AAGvf~ 174 (413)
T cd09245 112 LHYELAFVLLTYAYALSNLARSILAPLGAYETDRSISDASRKQRDERLKAATKLLCKAAGIFD 174 (413)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccccccccchHHHHHHHHHHHHHHHHHH
Confidence 35777888888888774322 26688899999998875
No 469
>KOG4563 consensus Cell cycle-regulated histone H1-binding protein [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=31.59 E-value=1.6e+02 Score=25.91 Aligned_cols=62 Identities=10% Similarity=-0.119 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHcc-Ccc-hHHHhHHHHHHHHHhhCCHHHHHHH
Q 026767 89 DLYRAATNVYIKLEKYADAATFLLRWGLAADKCN-ATN-SQCKAYLSAIIVYLYANDFKQAEKC 150 (233)
Q Consensus 89 ~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~-~~~-~~a~~~~~lg~~~~~~gd~~~A~~~ 150 (233)
.-+...|.-++.+++|++|...|..|..++.+.- ... .-..+++.-|.+++..++.....-.
T Consensus 42 e~lv~~G~~~~~~~d~~~Avda~s~A~~l~~ei~Ge~~~e~~eal~~YGkslLela~~e~~VL~ 105 (400)
T KOG4563|consen 42 EELVQAGRRALCNNDIDKAVDALSEATELSDEIYGEKHLETFEALFLYGKSLLELAKEESQVLG 105 (400)
T ss_pred HHHHHhhhHHHhcccHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 3455667777778888888888888887776542 222 1234456666777666665554443
No 470
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=31.30 E-value=2e+02 Score=20.76 Aligned_cols=118 Identities=12% Similarity=0.086 Sum_probs=72.4
Q ss_pred HHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh-h-CCHHHHHHHHHHHHHHHHhcC----ChHHHHHHHHHHHHHHHH
Q 026767 27 EVADFYRKASELYNECGRSQPASDALAKAARALE-D-AVPEDAIQLYTDACIMLEEDD----KEQMAFDLYRAATNVYIK 100 (233)
Q Consensus 27 eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~-~-g~~~~A~~~~~~Al~~~~~~g----~~~~~~~~l~~lg~~~~~ 100 (233)
+-...|++.+..+....||-..-.-+.+--.-.. . +....=...+++++..|.... |.+.. .+... |..
T Consensus 3 ~~r~~~e~~i~~~~~~dDPL~~w~~yI~w~~~~~p~~~~~~~L~~lLer~~~~f~~~~~Y~nD~Ryl-kiWi~----ya~ 77 (126)
T PF08311_consen 3 QQRQEFEEQIRSYEEGDDPLDPWLRYIKWIEENYPSGGKQSGLLELLERCIRKFKDDERYKNDERYL-KIWIK----YAD 77 (126)
T ss_dssp HHHHHHHHHHHCCGGSS-CHHHHHHHHHHHHHHCTTCCCCHHHHHHHHHHHHHHTTSGGGTT-HHHH-HHHHH----HHT
T ss_pred HHHHHHHHHHHHccCCCCChHHHHHHHHHHHHHCCCCCchhHHHHHHHHHHHHHhhhHhhcCCHHHH-HHHHH----HHH
Confidence 3456677777777766677655444433333322 3 455566789999999998764 33332 23333 333
Q ss_pred hccHHHHHHHHHHHHHHHhHccCcchHHHhHHHHHHHHHhhCCHHHHHHHHHHhh
Q 026767 101 LEKYADAATFLLRWGLAADKCNATNSQCKAYLSAIIVYLYANDFKQAEKCYNDCS 155 (233)
Q Consensus 101 ~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~gd~~~A~~~~~~al 155 (233)
.-+ .+.+.|.....- .+| ...+.-|..-+..+...|++.+|.+.|+.++
T Consensus 78 ~~~--~~~~if~~l~~~--~IG--~~~A~fY~~wA~~le~~~~~~~A~~I~~~Gi 126 (126)
T PF08311_consen 78 LSS--DPREIFKFLYSK--GIG--TKLALFYEEWAEFLEKRGNFKKADEIYQLGI 126 (126)
T ss_dssp TBS--HHHHHHHHHHHH--TTS--TTBHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred Hcc--CHHHHHHHHHHc--Ccc--HHHHHHHHHHHHHHHHcCCHHHHHHHHHhhC
Confidence 323 777777755532 333 3445667888999999999999999998764
No 471
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=31.17 E-value=6.5e+02 Score=28.05 Aligned_cols=88 Identities=9% Similarity=-0.022 Sum_probs=69.4
Q ss_pred CCHHHHHHHHHHHHHHHHhc-CChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHccCcchHHHhHHHHHHHHHh
Q 026767 62 AVPEDAIQLYTDACIMLEED-DKEQMAFDLYRAATNVYIKLEKYADAATFLLRWGLAADKCNATNSQCKAYLSAIIVYLY 140 (233)
Q Consensus 62 g~~~~A~~~~~~Al~~~~~~-g~~~~~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~ 140 (233)
.+..+-|-.+++++-...+. +-....++|+.+.+++-...|.++.|..+.-.|.+. ....++...+.....
T Consensus 1643 ~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~nall~A~e~--------r~~~i~~E~AK~lW~ 1714 (2382)
T KOG0890|consen 1643 FRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRAQNALLNAKES--------RLPEIVLERAKLLWQ 1714 (2382)
T ss_pred HHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhhhc--------ccchHHHHHHHHHHh
Confidence 44556666677777665554 555667789999999999999999999988887753 145567888889999
Q ss_pred hCCHHHHHHHHHHhhcC
Q 026767 141 ANDFKQAEKCYNDCSQV 157 (233)
Q Consensus 141 ~gd~~~A~~~~~~al~~ 157 (233)
+||...|+..+++.+..
T Consensus 1715 ~gd~~~Al~~Lq~~l~~ 1731 (2382)
T KOG0890|consen 1715 TGDELNALSVLQEILSK 1731 (2382)
T ss_pred hccHHHHHHHHHHHHHh
Confidence 99999999999998843
No 472
>PF05470 eIF-3c_N: Eukaryotic translation initiation factor 3 subunit 8 N-terminus; InterPro: IPR008905 The largest of the mammalian translation initiation factors, eIF3, consists of at least eight subunits ranging in mass from 35 to 170 kDa. eIF3 binds to the 40 S ribosome in an early step of translation initiation and promotes the binding of methionyl-tRNAi and mRNA [].; GO: 0003743 translation initiation factor activity, 0006413 translational initiation, 0005852 eukaryotic translation initiation factor 3 complex
Probab=30.97 E-value=4.6e+02 Score=24.75 Aligned_cols=123 Identities=16% Similarity=0.126 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhcCChHHHH-HHHHHHHHHHHHhccHHH--------------------------HHHHHHHHHHHHhH
Q 026767 68 IQLYTDACIMLEEDDKEQMAF-DLYRAATNVYIKLEKYAD--------------------------AATFLLRWGLAADK 120 (233)
Q Consensus 68 ~~~~~~Al~~~~~~g~~~~~~-~~l~~lg~~~~~~g~~~~--------------------------A~~~~~~al~~~~~ 120 (233)
+....++..+++..+.....+ .++..+=.+|.+...... ......+.-...-+
T Consensus 369 ~~l~~~~q~Y~e~~~~~~~~~r~~lrrlehiYyK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~L~~~iy~ 448 (595)
T PF05470_consen 369 YNLIDRVQQYYERTGDEEALARVALRRLEHIYYKPDQVIKAEEWNAWKSQSSSKESVPSPPADEESPSELIDRLCKYIYK 448 (595)
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHHhhCCcHHHHhhhhhhccccccccccccCCCCccCCCHHHHHHHHHHHHHH
Q ss_pred ccCcchHHHhHHHHHHHHHhhCCHHHHHHHHHHhh---cCCCCCCchH---HHHHHHHHH-HHhcCCHHHHHHHHhh
Q 026767 121 CNATNSQCKAYLSAIIVYLYANDFKQAEKCYNDCS---QVDAFLRSDQ---NRCATKLIS-AYTEGDVEEIKRVAQS 190 (233)
Q Consensus 121 ~~~~~~~a~~~~~lg~~~~~~gd~~~A~~~~~~al---~~~~~~~~~e---~~~l~~L~~-a~~~gd~~~a~~~~~~ 190 (233)
.++.....++.+...--+.-.|+|.+|+..+-.+. .+...+.+-+ .+++.+||- |++.|...+|..++.+
T Consensus 449 ~~~~~~r~rA~Lc~IY~~AL~d~~~~ARDllLmShlqe~I~~~D~~tQILyNR~~vQLGLcAFR~G~I~eah~~L~e 525 (595)
T PF05470_consen 449 DGDERLRTRAMLCHIYHHALHDRYYEARDLLLMSHLQESIQHSDISTQILYNRAMVQLGLCAFRAGLIKEAHQCLSE 525 (595)
T ss_pred CCcHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHhHHHHhhhccCHHHHHHHhHHHHHHHHHHHHcCCHHHHHHHHHH
No 473
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=30.75 E-value=4e+02 Score=23.97 Aligned_cols=18 Identities=17% Similarity=0.087 Sum_probs=10.1
Q ss_pred cCCHHHHHHHHHHHHHHH
Q 026767 22 LHNWREVADFYRKASELY 39 (233)
Q Consensus 22 ~g~~~eA~~~~~~A~~l~ 39 (233)
.||-..|..+-.++..+.
T Consensus 97 AGda~lARkmt~~~~~ll 114 (531)
T COG3898 97 AGDASLARKMTARASKLL 114 (531)
T ss_pred cCchHHHHHHHHHHHhhh
Confidence 455556666666655443
No 474
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=30.70 E-value=2.5e+02 Score=21.55 Aligned_cols=110 Identities=17% Similarity=0.081 Sum_probs=65.5
Q ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHccCcchHHHhHHHHHHHHHhhCCHHHHHHHHHHhhcCCCCCCchHHH
Q 026767 88 FDLYRAATNVYIKLEKYADAATFLLRWGLAADKCNATNSQCKAYLSAIIVYLYANDFKQAEKCYNDCSQVDAFLRSDQNR 167 (233)
Q Consensus 88 ~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~gd~~~A~~~~~~al~~~~~~~~~e~~ 167 (233)
...+..+..+-...++.+++..++...- +. ++.....-..-|.++...|++.+|+..|+...... ..+.-+.
T Consensus 10 v~gLie~~~~al~~~~~~D~e~lL~ALr-vL-----RP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~--~~~p~~k 81 (160)
T PF09613_consen 10 VGGLIEVLSVALRLGDPDDAEALLDALR-VL-----RPEFPELDLFDGWLHIVRGDWDDALRLLRELEERA--PGFPYAK 81 (160)
T ss_pred HHHHHHHHHHHHccCChHHHHHHHHHHH-Hh-----CCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccC--CCChHHH
Confidence 3467777788888999999988887443 32 33444456788999999999999999999975332 1223344
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhhcccccchHHHHHHhccC
Q 026767 168 CATKLISAYTEGDVEEIKRVAQSSAISNLDHVIIKLARKL 207 (233)
Q Consensus 168 ~l~~L~~a~~~gd~~~a~~~~~~~~~~~ld~~~~~l~~~l 207 (233)
.|..+.- +..||+ ..+.+-.+.+-..-|+....|.+.+
T Consensus 82 ALlA~CL-~~~~D~-~Wr~~A~evle~~~d~~a~~Lv~~L 119 (160)
T PF09613_consen 82 ALLALCL-YALGDP-SWRRYADEVLESGADPDARALVRAL 119 (160)
T ss_pred HHHHHHH-HHcCCh-HHHHHHHHHHhcCCChHHHHHHHHH
Confidence 4433331 245554 2222222222223244445555443
No 475
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=30.55 E-value=3e+02 Score=22.46 Aligned_cols=97 Identities=12% Similarity=-0.006 Sum_probs=59.5
Q ss_pred CCHHHHHHHHHHHHHHHHhcCC------hHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHc-cCcchHHHhHHHH
Q 026767 62 AVPEDAIQLYTDACIMLEEDDK------EQMAFDLYRAATNVYIKLEKYADAATFLLRWGLAADKC-NATNSQCKAYLSA 134 (233)
Q Consensus 62 g~~~~A~~~~~~Al~~~~~~g~------~~~~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~-~~~~~~a~~~~~l 134 (233)
|+++.|+++..-|++.--...+ ....++-...-+......|..-+. .+++....+.... -.....++.|-.+
T Consensus 97 Gd~~~AL~ia~yAI~~~l~~Pd~f~R~~~t~vaeev~~~A~~~~~ag~~~e~-~~~~~~~~l~~~~dmpd~vrAKl~K~~ 175 (230)
T PHA02537 97 GDFDGALEIAEYALEHGLTMPDQFRRTLANFVAEEVANAALKAASAGESVEP-YFLRVFLDLTTEWDMPDEVRAKLYKAA 175 (230)
T ss_pred cCHHHHHHHHHHHHHcCCCCCccccCCchHHHHHHHHHHHHHHHHcCCCCCh-HHHHHHHHHHhcCCCChHHHHHHHHHH
Confidence 9999999999999987554432 222333333444444555542221 2333333343222 2234567778888
Q ss_pred HHHHH---------hhCCHHHHHHHHHHhhcCCC
Q 026767 135 IIVYL---------YANDFKQAEKCYNDCSQVDA 159 (233)
Q Consensus 135 g~~~~---------~~gd~~~A~~~~~~al~~~~ 159 (233)
|..++ ..++...|..++++|+.+..
T Consensus 176 G~~llr~~~g~~~~d~~~l~~Al~~L~rA~~l~~ 209 (230)
T PHA02537 176 GYLLLRNEKGEPIGDAETLQLALALLQRAFQLND 209 (230)
T ss_pred HHHHhhcccCCCccCcccHHHHHHHHHHHHHhCC
Confidence 99885 45688899999999986653
No 476
>KOG4563 consensus Cell cycle-regulated histone H1-binding protein [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=30.53 E-value=2.8e+02 Score=24.45 Aligned_cols=28 Identities=21% Similarity=0.163 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 026767 11 HMESAAALAKELHNWREVADFYRKASEL 38 (233)
Q Consensus 11 ~~~~~g~~~~~~g~~~eA~~~~~~A~~l 38 (233)
-+..+|+.+...+++++|...|.+|..+
T Consensus 43 ~lv~~G~~~~~~~d~~~Avda~s~A~~l 70 (400)
T KOG4563|consen 43 ELVQAGRRALCNNDIDKAVDALSEATEL 70 (400)
T ss_pred HHHHhhhHHHhcccHHHHHHHHHHHHHH
Confidence 3444444444444444444444444443
No 477
>KOG2709 consensus Uncharacterized conserved protein [Function unknown]
Probab=30.39 E-value=81 Score=28.22 Aligned_cols=35 Identities=17% Similarity=0.322 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 026767 6 WDAAKHMESAAALAKELHNWREVADFYRKASELYN 40 (233)
Q Consensus 6 ~~~a~~~~~~g~~~~~~g~~~eA~~~~~~A~~l~~ 40 (233)
+..|-+..+.|..|-+.+++++|+.+|++++.+..
T Consensus 19 yk~A~~~V~~gl~~dE~~~~e~a~~~Ye~gl~~i~ 53 (560)
T KOG2709|consen 19 YKGAYASVEQGLCYDEVNDWENALAMYEKGLNLIV 53 (560)
T ss_pred HHHHHHHHHhhcchhhhcCHHHHHHHHHHHHHHHH
Confidence 45555666677777777777777777777776653
No 478
>KOG1811 consensus Predicted Zn2+-binding protein, contains FYVE domain [General function prediction only]
Probab=30.17 E-value=2.3e+02 Score=26.93 Aligned_cols=50 Identities=12% Similarity=0.064 Sum_probs=37.9
Q ss_pred HHHHHHHHHHhHccCcchHHHhHHHHHHHHHhhCCHHHHHHHHHHhhcCCCC
Q 026767 109 TFLLRWGLAADKCNATNSQCKAYLSAIIVYLYANDFKQAEKCYNDCSQVDAF 160 (233)
Q Consensus 109 ~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~gd~~~A~~~~~~al~~~~~ 160 (233)
++|+-+++++.+.+.... .++..-|+++++.+++..|+.-|.++...++.
T Consensus 570 ErYqlaV~mckKc~iD~f--~aW~AWGlA~Lk~e~~aaAR~KFkqafklkge 619 (1141)
T KOG1811|consen 570 ERYQLAVEMCKKCGIDTF--GAWHAWGLACLKAENLAAAREKFKQAFKLKGE 619 (1141)
T ss_pred HHHHHHHHHHhhcCCCcc--cHHHHHHHHHHHhhhHHHHHHHHHHHhCCCCC
Confidence 456667777777665433 34667789999999999999999999876643
No 479
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=30.03 E-value=3.9e+02 Score=23.57 Aligned_cols=98 Identities=9% Similarity=-0.118 Sum_probs=45.9
Q ss_pred HHHHhhhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHccCcchHHHhHHHH
Q 026767 55 AARALEDAVPEDAIQLYTDACIMLEEDDKEQMAFDLYRAATNVYIKLEKYADAATFLLRWGLAADKCNATNSQCKAYLSA 134 (233)
Q Consensus 55 lg~~~~~g~~~~A~~~~~~Al~~~~~~g~~~~~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~l 134 (233)
.+.++-.|.+.+|.....+-++-|+..= .+..---..+..+|+...-...+++.+.-. ..+.+--..+.--.
T Consensus 110 aai~~~~g~~h~a~~~wdklL~d~PtDl------la~kfsh~a~fy~G~~~~~k~ai~kIip~w--n~dlp~~sYv~Gmy 181 (491)
T KOG2610|consen 110 AAILWGRGKHHEAAIEWDKLLDDYPTDL------LAVKFSHDAHFYNGNQIGKKNAIEKIIPKW--NADLPCYSYVHGMY 181 (491)
T ss_pred HHHhhccccccHHHHHHHHHHHhCchhh------hhhhhhhhHHHhccchhhhhhHHHHhcccc--CCCCcHHHHHHHHH
Confidence 3444446777777666666666555310 122223334444555555555555544211 01111111122223
Q ss_pred HHHHHhhCCHHHHHHHHHHhhcCCCC
Q 026767 135 IIVYLYANDFKQAEKCYNDCSQVDAF 160 (233)
Q Consensus 135 g~~~~~~gd~~~A~~~~~~al~~~~~ 160 (233)
+.+....|-|.+|++.-.+++++.+|
T Consensus 182 aFgL~E~g~y~dAEk~A~ralqiN~~ 207 (491)
T KOG2610|consen 182 AFGLEECGIYDDAEKQADRALQINRF 207 (491)
T ss_pred HhhHHHhccchhHHHHHHhhccCCCc
Confidence 33444456666666666666665555
No 480
>cd09240 BRO1_Alix Protein-interacting, N-terminal, Bro1-like domain of mammalian Alix and related domains. This family contains the N-terminal, Bro1-like domain of mammalian Alix (apoptosis-linked gene-2 interacting protein X), also called apoptosis-linked gene-2 interacting protein 1 (AIP1). It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, HD-PTP, Brox, Bro1, Rim20, and Rim23, interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Alix participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also f
Probab=29.83 E-value=2.5e+02 Score=24.25 Aligned_cols=12 Identities=25% Similarity=0.285 Sum_probs=5.7
Q ss_pred HHHHHHHHHHHH
Q 026767 68 IQLYTDACIMLE 79 (233)
Q Consensus 68 ~~~~~~Al~~~~ 79 (233)
..+|+.|.....
T Consensus 219 ~~~Y~~a~~~l~ 230 (346)
T cd09240 219 ADYYGDAFKQCQ 230 (346)
T ss_pred HHHHHHHHHHHh
Confidence 344555554444
No 481
>PRK12798 chemotaxis protein; Reviewed
Probab=29.59 E-value=3.2e+02 Score=24.54 Aligned_cols=91 Identities=13% Similarity=0.011 Sum_probs=47.1
Q ss_pred HHhccHHHHHHHHHHHHHHHhHccCcchHHH-hHHHHHHHHHhhCCHHHHHHHHHHhh-cCCCCCCchHHHHHHHHHHHH
Q 026767 99 IKLEKYADAATFLLRWGLAADKCNATNSQCK-AYLSAIIVYLYANDFKQAEKCYNDCS-QVDAFLRSDQNRCATKLISAY 176 (233)
Q Consensus 99 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~-~~~~lg~~~~~~gd~~~A~~~~~~al-~~~~~~~~~e~~~l~~L~~a~ 176 (233)
+-.|+-.+|...+...-... .+...+- .-+..|.+ ....|..+|++.|..+- ..|+. --+|+..-..+.-+-
T Consensus 123 Y~~Gr~~~a~~~La~i~~~~----l~~~lg~~laLv~a~l-~~~~dP~~Al~~lD~aRLlaPGT-LvEEAALRRsi~la~ 196 (421)
T PRK12798 123 YLSGRGREARKLLAGVAPEY----LPAELGAYLALVQGNL-MVATDPATALKLLDQARLLAPGT-LVEEAALRRSLFIAA 196 (421)
T ss_pred HHcCCHHHHHHHhhcCChhh----cCchhhhHHHHHHHHH-hcccCHHHHHHHHHHHHHhCCch-HHHHHHHHHhhHHHH
Confidence 34677777776665443221 1122221 11222222 33457888888888875 33421 124444444444444
Q ss_pred hcCCHHHHHHHHhhccccc
Q 026767 177 TEGDVEEIKRVAQSSAISN 195 (233)
Q Consensus 177 ~~gd~~~a~~~~~~~~~~~ 195 (233)
..||.++|..+..+|+-++
T Consensus 197 ~~g~~~rf~~la~~Y~rRF 215 (421)
T PRK12798 197 QLGDADKFEALARNYLRRF 215 (421)
T ss_pred hcCcHHHHHHHHHHHHHHh
Confidence 7788888877777763333
No 482
>PF08969 USP8_dimer: USP8 dimerisation domain; InterPro: IPR015063 This domain is predominantly found in the amino terminal region of Ubiquitin carboxyl-terminal hydrolase 8 (USP8). It has no known function. ; PDB: 2XZE_B 2A9U_A.
Probab=29.51 E-value=1.5e+02 Score=20.99 Aligned_cols=28 Identities=21% Similarity=0.287 Sum_probs=14.2
Q ss_pred HHHHHHHHhh-hCCHHHHHHHHHHHHHHH
Q 026767 51 ALAKAARALE-DAVPEDAIQLYTDACIML 78 (233)
Q Consensus 51 ~l~~lg~~~~-~g~~~~A~~~~~~Al~~~ 78 (233)
.+...|..+. .|+.+.|.-+|.+.+.++
T Consensus 40 ~l~~~A~~~~~egd~E~AYvl~~R~~~L~ 68 (115)
T PF08969_consen 40 KLLREAEEYRQEGDEEQAYVLYMRYLTLV 68 (115)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 3334444454 455555555555555555
No 483
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=29.26 E-value=3.2e+02 Score=22.95 Aligned_cols=67 Identities=9% Similarity=-0.037 Sum_probs=50.9
Q ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHccCcchHHHhHHHHHHHHHhhCCHHHHHHHHHHhh-cCC
Q 026767 86 MAFDLYRAATNVYIKLEKYADAATFLLRWGLAADKCNATNSQCKAYLSAIIVYLYANDFKQAEKCYNDCS-QVD 158 (233)
Q Consensus 86 ~~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~gd~~~A~~~~~~al-~~~ 158 (233)
.....+.++=..+.+.++++.|..+.++.+.+.-. ......--|.+|..+|.+..|++-++.++ .++
T Consensus 179 il~rll~~lk~~~~~e~~~~~al~~~~r~l~l~P~------dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P 246 (269)
T COG2912 179 ILSRLLRNLKAALLRELQWELALRVAERLLDLNPE------DPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCP 246 (269)
T ss_pred HHHHHHHHHHHHHHHhhchHHHHHHHHHHHhhCCC------ChhhccCcHHHHHhcCCchhhHHHHHHHHHhCC
Confidence 34456777777888999999999999998876221 12234567899999999999999999876 444
No 484
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=29.09 E-value=4.1e+02 Score=23.53 Aligned_cols=54 Identities=13% Similarity=-0.002 Sum_probs=41.0
Q ss_pred HHHHcCCHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHhh-h--CCHHHHHHHHH
Q 026767 18 LAKELHNWREVADFYRKASELYNECGRSQPASDALAKAARALE-D--AVPEDAIQLYT 72 (233)
Q Consensus 18 ~~~~~g~~~eA~~~~~~A~~l~~~~g~~~~~a~~l~~lg~~~~-~--g~~~~A~~~~~ 72 (233)
-+.+.++|..|...|++...-- -.++....-..+.++...|. . -++++|.++++
T Consensus 139 ~l~n~~dy~aA~~~~~~L~~r~-l~~~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~L~ 195 (380)
T TIGR02710 139 RAINAFDYLFAHARLETLLRRL-LSAVNHTFYEAMIKLTRAYLHWDRFEHEEALDYLN 195 (380)
T ss_pred HHHHhcChHHHHHHHHHHHhcc-cChhhhhHHHHHHHHHHHHHHHHccCHHHHHHHHh
Confidence 4455899999999999998652 22344455677888888887 3 79999999998
No 485
>COG1516 FliS Flagellin-specific chaperone FliS [Cell motility and secretion / Intracellular trafficking and secretion / Posttranslational modification, protein turnover, chaperones]
Probab=28.91 E-value=2.3e+02 Score=20.96 Aligned_cols=23 Identities=17% Similarity=0.098 Sum_probs=16.8
Q ss_pred hhhCCHHHHHHHHHHHHHHHHhc
Q 026767 59 LEDAVPEDAIQLYTDACIMLEED 81 (233)
Q Consensus 59 ~~~g~~~~A~~~~~~Al~~~~~~ 81 (233)
.+++++++..+...||.+|+.+.
T Consensus 42 ie~~~i~~k~~~i~ka~~Ii~eL 64 (132)
T COG1516 42 IEQEDIEEKNESIDKAIDIITEL 64 (132)
T ss_pred HHhccHHHHHHHHHHHHHHHHHH
Confidence 33677778888888888877754
No 486
>cd09034 BRO1_Alix_like Protein-interacting Bro1-like domain of mammalian Alix and related domains. This superfamily includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and Rhophilin-2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, and related domains. Alix, HD-PTP, Brox, Bro1 and Rim20 interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Alix, also known as apoptosis-linked gene-2 interacting protein 1 (AIP1), participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also functions in apoptosis. HD-PTP functions in cell migration and endosomal trafficking, Bro1 in endosomal trafficking, and Rim20 in the response to
Probab=28.72 E-value=3.7e+02 Score=22.93 Aligned_cols=50 Identities=14% Similarity=-0.026 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHhHccCc------------------chHHHhHHHHHHHHHhhCCHHHHHHHHHHhh
Q 026767 106 DAATFLLRWGLAADKCNAT------------------NSQCKAYLSAIIVYLYANDFKQAEKCYNDCS 155 (233)
Q Consensus 106 ~A~~~~~~al~~~~~~~~~------------------~~~a~~~~~lg~~~~~~gd~~~A~~~~~~al 155 (233)
++..+|+++.......... ...+.+++..|..+...+++.+|+.+++.|.
T Consensus 211 ~~~~~y~~A~~~l~~~~~~~~~~~~~~w~~~v~~K~~~~~a~a~~~~a~~~~e~~~~G~aia~L~~A~ 278 (345)
T cd09034 211 EAAKYYEEALKCLSGVDLETIKNIPKKWLLFLKWKKCIFKALAYYYHGLKLDEANKIGEAIARLQAAL 278 (345)
T ss_pred HHHHHHHHHHHHHhcCCchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHH
Confidence 6667777777766543321 1234444555555555566667776666664
No 487
>PF08969 USP8_dimer: USP8 dimerisation domain; InterPro: IPR015063 This domain is predominantly found in the amino terminal region of Ubiquitin carboxyl-terminal hydrolase 8 (USP8). It has no known function. ; PDB: 2XZE_B 2A9U_A.
Probab=28.54 E-value=2.1e+02 Score=20.14 Aligned_cols=36 Identities=11% Similarity=0.034 Sum_probs=25.0
Q ss_pred hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 026767 5 PWDAAKHMESAAALAKELHNWREVADFYRKASELYN 40 (233)
Q Consensus 5 ~~~~a~~~~~~g~~~~~~g~~~eA~~~~~~A~~l~~ 40 (233)
++..|..+..-|..|...|+.+.|--+|-+.+.++.
T Consensus 34 y~rsa~~l~~~A~~~~~egd~E~AYvl~~R~~~L~~ 69 (115)
T PF08969_consen 34 YLRSANKLLREAEEYRQEGDEEQAYVLYMRYLTLVE 69 (115)
T ss_dssp HHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 445666666777777777777777777777777763
No 488
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=28.43 E-value=2.7e+02 Score=21.20 Aligned_cols=84 Identities=15% Similarity=0.034 Sum_probs=48.8
Q ss_pred HHHHHHHHHHhh-hCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHccCcchH
Q 026767 49 SDALAKAARALE-DAVPEDAIQLYTDACIMLEEDDKEQMAFDLYRAATNVYIKLEKYADAATFLLRWGLAADKCNATNSQ 127 (233)
Q Consensus 49 a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~~~~~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 127 (233)
...+.++..+-. .++++.+...+...--+.++.. ..-.--|.+++..|++++|+..++...+- +....-
T Consensus 10 v~gLi~~~~~aL~~~d~~D~e~lLdALrvLrP~~~------e~d~~dg~l~i~rg~w~eA~rvlr~l~~~----~~~~p~ 79 (153)
T TIGR02561 10 LGGLIEVLMYALRSADPYDAQAMLDALRVLRPNLK------ELDMFDGWLLIARGNYDEAARILRELLSS----AGAPPY 79 (153)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCcc------ccchhHHHHHHHcCCHHHHHHHHHhhhcc----CCCchH
Confidence 333444444333 5777777665554444444433 23334688999999999999999876531 111122
Q ss_pred HHhHHHHHHHHHhhCCH
Q 026767 128 CKAYLSAIIVYLYANDF 144 (233)
Q Consensus 128 a~~~~~lg~~~~~~gd~ 144 (233)
++ --++.|...+||.
T Consensus 80 ~k--AL~A~CL~al~Dp 94 (153)
T TIGR02561 80 GK--ALLALCLNAKGDA 94 (153)
T ss_pred HH--HHHHHHHHhcCCh
Confidence 22 3455677777765
No 489
>PF14716 HHH_8: Helix-hairpin-helix domain; PDB: 2W9M_A 1HUZ_A 1HUO_A 2BPG_B 2BPF_A 1DK3_A 1BPE_A 1BNO_A 1BNP_A 1DK2_A ....
Probab=27.07 E-value=86 Score=19.91 Aligned_cols=48 Identities=17% Similarity=0.146 Sum_probs=33.8
Q ss_pred HHHHHHHHHHH-hc-CCHHHHHHHHhhc-ccccchHHHHHHhc-cCCCCchh
Q 026767 166 NRCATKLISAY-TE-GDVEEIKRVAQSS-AISNLDHVIIKLAR-KLPTGDVS 213 (233)
Q Consensus 166 ~~~l~~L~~a~-~~-gd~~~a~~~~~~~-~~~~ld~~~~~l~~-~l~~~~~~ 213 (233)
...|..+.+.+ .. +|.-.+..+.+-+ .++.++.++..+-. ....++|+
T Consensus 5 ~~~L~~la~~~~~~~~~~~r~~aY~~Aa~~i~~l~~~i~~~~~~~~~l~gIG 56 (68)
T PF14716_consen 5 ADALEELADLYELQGGDPFRARAYRRAAAAIKALPYPITSGEEDLKKLPGIG 56 (68)
T ss_dssp HHHHHHHHHHHHHTSTSHHHHHHHHHHHHHHHHSSS-HHSHHHHHCTSTTTT
T ss_pred HHHHHHHHHHHHHhhCCcHHHHHHHHHHHHHHhCCHhHhhHHHHHhhCCCCC
Confidence 46778888877 35 8888888888877 88888888777743 34555555
No 490
>KOG2561 consensus Adaptor protein NUB1, contains UBA domain [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=26.98 E-value=4.9e+02 Score=23.74 Aligned_cols=112 Identities=15% Similarity=-0.004 Sum_probs=64.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCchHHHH---HHHHH--HHHhh-h---CCHHHHHHHHHHHHHHHHhc
Q 026767 11 HMESAAALAKELHNWREVADFYRKASELYNECGRSQPASD---ALAKA--ARALE-D---AVPEDAIQLYTDACIMLEED 81 (233)
Q Consensus 11 ~~~~~g~~~~~~g~~~eA~~~~~~A~~l~~~~g~~~~~a~---~l~~l--g~~~~-~---g~~~~A~~~~~~Al~~~~~~ 81 (233)
.|..-|.++.....|++|+.+.-.|-+.|...+...-... ++.++ -.+|. . ...+.|-.-+-+|-.-|...
T Consensus 165 g~hekaRa~m~re~y~eAl~~LleADe~F~~Cd~klLe~VDNyallnLDIVWCYfrLknitcL~DAe~RL~ra~kgf~~s 244 (568)
T KOG2561|consen 165 GLHEKARAAMEREMYSEALLVLLEADESFSLCDSKLLELVDNYALLNLDIVWCYFRLKNITCLPDAEVRLVRARKGFERS 244 (568)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhHHHHHhhcchhhhhcchhheehhhcccccCChHHHHHHHHHHhhhhh
Confidence 4555566666777899999999999988877665322211 12222 22232 1 23333433333333333321
Q ss_pred ------------C-C---hHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhHcc
Q 026767 82 ------------D-K---EQMAFDLYRAATNVYIKLEKYADAATFLLRWGLAADKCN 122 (233)
Q Consensus 82 ------------g-~---~~~~~~~l~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~ 122 (233)
| . ....-....--|.+...+|+-++|.++++.+...+.+..
T Consensus 245 yGenl~Rl~~lKg~~spEraL~lRL~LLQGV~~yHqg~~deAye~le~a~~~l~elk 301 (568)
T KOG2561|consen 245 YGENLSRLRSLKGGQSPERALILRLELLQGVVAYHQGQRDEAYEALESAHAKLLELK 301 (568)
T ss_pred hhhhhHhhhhccCCCChhHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHee
Confidence 1 1 111112334458888899999999999999987665543
No 491
>cd09244 BRO1_Rhophilin Protein-interacting Bro1-like domain of RhoA-binding protein Rhophilin and related domains. This family contains the Bro1-like domain of RhoA-binding proteins, Rhophilin-1 and -2, and related domains. It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Rhophilin-1 and -2 bind both GDP- and GTP-bound RhoA. Bro1-like domains are boomerang-shaped, and part of the domain is a tetratricopeptide repeat (TPR)-like structure. In addition to this Bro1-like domain, Rhophilin-1 and -2, contain an N-terminal Rho-binding domain and a C-terminal PDZ (PS.D.-95, Disc-large, ZO-1) domain. Their PDZ domains have limited homology. Rhophilin-1 and -2 have different ac
Probab=26.76 E-value=4.3e+02 Score=23.04 Aligned_cols=37 Identities=16% Similarity=0.285 Sum_probs=27.8
Q ss_pred hHHHHHHHHHHHHHHHHcCC---------HHHHHHHHHHHHHHHHH
Q 026767 5 PWDAAKHMESAAALAKELHN---------WREVADFYRKASELYNE 41 (233)
Q Consensus 5 ~~~~a~~~~~~g~~~~~~g~---------~~eA~~~~~~A~~l~~~ 41 (233)
.+..+..+.|+|-+|.+.+- ..+|..+|++|.-+|.-
T Consensus 102 ~fEkasVLFNigAl~Sq~aa~~~r~~~eglK~A~~~Fq~AAG~F~~ 147 (350)
T cd09244 102 AFEKASVLFNIGALYTQIGAKQDRTTEEGIEAAVDAFQRAAGAFNY 147 (350)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHH
Confidence 56778888888888754322 67899999999988754
No 492
>cd09242 BRO1_ScBro1_like Protein-interacting, N-terminal, Bro1-like domain of Saccharomyces cerevisiae Bro1 and related proteins. This family contains the N-terminal, Bro1-like domain of Saccharomyces cerevisiae Bro1 and related proteins. It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Brox, Saccharomyces cerevisiae Rim20 (also known as PalA), Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, HD-PTP, Brox, Bro1, Rim20, and Rim23, interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Bro1 participates in endosomal trafficking. Bro1-like domains are boomerang-shaped, and part of the domain is a tetratricopeptide repeat (TPR)-like structure. Bro1-like domains bind components of the ESCRT-III complex: Snf7 in the
Probab=26.12 E-value=4.3e+02 Score=22.84 Aligned_cols=33 Identities=15% Similarity=0.056 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHhh-h---------CCHHHHHHHHHHHHHHHH
Q 026767 47 PASDALAKAARALE-D---------AVPEDAIQLYTDACIMLE 79 (233)
Q Consensus 47 ~~a~~l~~lg~~~~-~---------g~~~~A~~~~~~Al~~~~ 79 (233)
..+.++.|+|.++. . .....|..+|++|.-+|.
T Consensus 105 Eka~VLfNiaal~s~~A~~~~~~~~~~~K~A~~~fq~AAG~f~ 147 (348)
T cd09242 105 EKASVLFNIGALLSQLAAEKYREDEDDLKEAITNLQQAAGCFQ 147 (348)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHH
Confidence 44556666666654 2 246789999999998886
No 493
>PF12753 Nro1: Nuclear pore complex subunit Nro1; InterPro: IPR024318 In fission yeast, Nro1 is a positive regulator of the stability of Sre1N, the sterol regulatory element-binding protein, which is an ER membrane-bound transcription factor that controls adaptation to low oxygen-growth []. In addition, the fission yeast Nro1 is a direct inhibitor of a protein that inhibits SreN1 degradation, Ofd1 (an oxoglutamate deoxygenase). The outcome of this reactivity is that Ofd1 acts as an oxygen sensor that regulates the binding of Nro1 to Ofd1 to control the stability of Sre1N []. This entry also represents ETT1, an Nro1 ortholog []. ETT1 is required for correct translation termination and probably involved in regulation of hypoxic gene expression in association TPA1 []. It inhibits replication of Brome mosaic virus [].; GO: 0005515 protein binding, 0005634 nucleus; PDB: 3QTM_B 3MSV_B 3QTN_B.
Probab=25.83 E-value=1.2e+02 Score=26.81 Aligned_cols=33 Identities=18% Similarity=0.064 Sum_probs=18.2
Q ss_pred HHHHHHHHHHHHHHhcC------ChHHHHHHHHHHHHHH
Q 026767 66 DAIQLYTDACIMLEEDD------KEQMAFDLYRAATNVY 98 (233)
Q Consensus 66 ~A~~~~~~Al~~~~~~g------~~~~~~~~l~~lg~~~ 98 (233)
.|+.+..+|+++.+... .+...|.++..+|.+|
T Consensus 329 ~a~~l~~~Al~yL~kA~d~ddPetWv~vAEa~I~LGNL~ 367 (404)
T PF12753_consen 329 IAQELIKKALEYLKKAQDEDDPETWVDVAEAMIDLGNLY 367 (404)
T ss_dssp THHHHHHHHHHHHHHHHHS--TTHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHhhccCChhHHHHHHHHHhhhhccc
Confidence 35666666666666432 2444556666666665
No 494
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=25.80 E-value=76 Score=27.66 Aligned_cols=104 Identities=16% Similarity=0.049 Sum_probs=70.8
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH--cCCc-----------hHHHHHHHHHHHHhh-hCCHHHHHHHHH
Q 026767 7 DAAKHMESAAALAKELHNWREVADFYRKASELYNE--CGRS-----------QPASDALAKAARALE-DAVPEDAIQLYT 72 (233)
Q Consensus 7 ~~a~~~~~~g~~~~~~g~~~eA~~~~~~A~~l~~~--~g~~-----------~~~a~~l~~lg~~~~-~g~~~~A~~~~~ 72 (233)
...+...+.++-....+++.+|..-|.++...... ..+. ...-....+++.+-. .+.+..|+..-.
T Consensus 220 ~~~~~~k~~~~~~~kk~~~~~a~~k~~k~~r~~~~~s~~~~~e~~~~~~~~~~~r~~~~~n~~~~~lk~~~~~~a~~~~~ 299 (372)
T KOG0546|consen 220 EREEKKKNIGNKEFKKQRYREALAKYRKALRYLSEQSRDREKEQENRIPPLRELRFSIRRNLAAVGLKVKGRGGARFRTN 299 (372)
T ss_pred hhhhhhhccchhhhhhccHhHHHHHHHHHhhhhcccccccccccccccccccccccccccchHHhcccccCCCcceeccc
Confidence 34455666777788899999999999999988752 1111 112234455555555 466666665555
Q ss_pred HHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Q 026767 73 DACIMLEEDDKEQMAFDLYRAATNVYIKLEKYADAATFLLRWGL 116 (233)
Q Consensus 73 ~Al~~~~~~g~~~~~~~~l~~lg~~~~~~g~~~~A~~~~~~al~ 116 (233)
.+++ +.......+...+..+....++++|++.++.+..
T Consensus 300 ~~~~------~~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~ 337 (372)
T KOG0546|consen 300 EALR------DERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQ 337 (372)
T ss_pred cccc------cChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhc
Confidence 5554 2233456788999999999999999999988764
No 495
>PRK09591 celC cellobiose phosphotransferase system IIA component; Reviewed
Probab=25.79 E-value=2.4e+02 Score=19.83 Aligned_cols=16 Identities=13% Similarity=0.111 Sum_probs=6.5
Q ss_pred cCCHHHHHHHHHHHHH
Q 026767 22 LHNWREVADFYRKASE 37 (233)
Q Consensus 22 ~g~~~eA~~~~~~A~~ 37 (233)
.|+|++|-++..+|-+
T Consensus 33 ~gdf~~A~~~l~eA~~ 48 (104)
T PRK09591 33 EGNFDLAEQKLNQSNE 48 (104)
T ss_pred cCCHHHHHHHHHHHHH
Confidence 3444444444444333
No 496
>COG5290 IkappaB kinase complex, IKAP component [Transcription]
Probab=25.76 E-value=6.4e+02 Score=25.02 Aligned_cols=55 Identities=24% Similarity=0.158 Sum_probs=29.4
Q ss_pred CCHHHHHHHHHHHHHHHHHcCCchH-----------HHHHHHHHHHHhh-hCCHHHHHHHHHHHHHH
Q 026767 23 HNWREVADFYRKASELYNECGRSQP-----------ASDALAKAARALE-DAVPEDAIQLYTDACIM 77 (233)
Q Consensus 23 g~~~eA~~~~~~A~~l~~~~g~~~~-----------~a~~l~~lg~~~~-~g~~~~A~~~~~~Al~~ 77 (233)
-+|-.-.+.|..++.+|+--|..+. ...-+...+.+|+ .|.+-+|+..|..|..+
T Consensus 898 ~~yi~~hdly~~~l~lyrYd~e~Qk~~~nifa~~l~~n~~~~~aa~aye~~gK~~Ea~gay~sA~mw 964 (1243)
T COG5290 898 MKYICRHDLYDFLLLLYRYDGELQKFKINIFAGNLVDNLYHISAAKAYEVEGKYIEAHGAYDSALMW 964 (1243)
T ss_pred HHHHHhccchHHHHHHHHhhhhhhhhhHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444456666666653332211 1122344566666 57777777777666544
No 497
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=25.59 E-value=1.9e+02 Score=26.81 Aligned_cols=46 Identities=17% Similarity=0.226 Sum_probs=28.3
Q ss_pred HHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Q 026767 71 YTDACIMLEEDDKEQMAFDLYRAATNVYIKLEKYADAATFLLRWGL 116 (233)
Q Consensus 71 ~~~Al~~~~~~g~~~~~~~~l~~lg~~~~~~g~~~~A~~~~~~al~ 116 (233)
.++.+.+..+.|-...+..+...+|.-+.+.|+|..|+.++.++-.
T Consensus 408 ~~k~l~iC~~~~L~~~a~~I~~~~~~~~~~~~~~g~AL~~~~ra~d 453 (566)
T PF07575_consen 408 AEKLLEICAELGLEDVAREICKILGQRLLKEGRYGEALSWFIRAGD 453 (566)
T ss_dssp HHHHHHHHHHHT-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH----
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHCCC
Confidence 4566666666666556666677777777777777777777776653
No 498
>PF02255 PTS_IIA: PTS system, Lactose/Cellobiose specific IIA subunit; InterPro: IPR003188 The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS) [, ] is a major carbohydrate transport system in bacteria. The PTS catalyses the phosphorylation of incoming sugar substrates and coupled with translocation across the cell membrane, makes the PTS a link between the uptake and metabolism of sugars. The general mechanism of the PTS is the following: a phosphoryl group from phosphoenolpyruvate (PEP) is transferred via a signal transduction pathway, to enzyme I (EI) which in turn transfers it to a phosphoryl carrier, the histidine protein (HPr). Phospho-HPr then transfers the phosphoryl group to a sugar-specific permease, a membrane-bound complex known as enzyme 2 (EII), which transports the sugar to the cell. EII consists of at least three structurally distinct domains IIA, IIB and IIC []. These can either be fused together in a single polypeptide chain or exist as two or three interactive chains, formerly called enzymes II (EII) and III (EIII). The first domain (IIA or EIIA) carries the first permease-specific phosphorylation site, a histidine which is phosphorylated by phospho-HPr. The second domain (IIB or EIIB) is phosphorylated by phospho-IIA on a cysteinyl or histidyl residue, depending on the sugar transported. Finally, the phosphoryl group is transferred from the IIB domain to the sugar substrate concomitantly with the sugar uptake processed by the IIC domain. This third domain (IIC or EIIC) forms the translocation channel and the specific substrate-binding site. An additional transmembrane domain IID, homologous to IIC, can be found in some PTSs, e.g. for mannose [, , , ]. The lactose/cellobiose-specific family are one of four structurally and functionally distinct group IIA PTS system enzymes. This family of proteins normally function as a homotrimer, stabilised by a centrally located metal ion []. Separation into subunits is thought to occur after phosphorylation.; GO: 0005351 sugar:hydrogen symporter activity, 0006810 transport, 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0016020 membrane; PDB: 3L8R_D 2E2A_B 1E2A_C 3K1S_C 2LRK_C 2LRL_A 2WY2_A 1WCR_A 2WWV_C.
Probab=25.20 E-value=2.4e+02 Score=19.50 Aligned_cols=31 Identities=19% Similarity=0.279 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 026767 9 AKHMESAAALAKELHNWREVADFYRKASELY 39 (233)
Q Consensus 9 a~~~~~~g~~~~~~g~~~eA~~~~~~A~~l~ 39 (233)
|+++.--+.-..+.|+|++|-.++.+|-+.+
T Consensus 14 Ars~~~eAl~~a~~~~fe~A~~~l~~a~~~l 44 (96)
T PF02255_consen 14 ARSLAMEALKAAREGDFEEAEELLKEADEEL 44 (96)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 3333333333444555555555555555544
No 499
>COG3014 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=25.05 E-value=4.8e+02 Score=22.99 Aligned_cols=30 Identities=3% Similarity=-0.030 Sum_probs=22.0
Q ss_pred HHHHHhh-hCCHHHHHHHHHHHHHHHHhcCC
Q 026767 54 KAARALE-DAVPEDAIQLYTDACIMLEEDDK 83 (233)
Q Consensus 54 ~lg~~~~-~g~~~~A~~~~~~Al~~~~~~g~ 83 (233)
+.|.++. .++|.++...+.-+-+-+++..+
T Consensus 63 ~~Gl~a~~~~dya~S~~~ldAae~~~KqqqD 93 (449)
T COG3014 63 QNGLSALYARDYATSLGVLDAAEQRFKQQQD 93 (449)
T ss_pred hhhHHHHHhhhHHHhhhHHHHHHHHHhhhhh
Confidence 4477777 68888888888777777776654
No 500
>PRK10454 PTS system N,N'-diacetylchitobiose-specific transporter subunit IIA; Provisional
Probab=24.99 E-value=2.6e+02 Score=20.16 Aligned_cols=36 Identities=14% Similarity=0.165 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHc
Q 026767 7 DAAKHMESAAALAKELHNWREVADFYRKASELYNEC 42 (233)
Q Consensus 7 ~~a~~~~~~g~~~~~~g~~~eA~~~~~~A~~l~~~~ 42 (233)
|.|+++.--|.-..+.|+|++|-.+..+|-+.+.+.
T Consensus 29 G~ArS~~~eAl~~Ak~gdfe~A~~~l~eA~e~l~~A 64 (115)
T PRK10454 29 GQARSLAYAALKQAKQGDFAAAKAMMDQSRMALNEA 64 (115)
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH
Done!