Query 026769
Match_columns 233
No_of_seqs 107 out of 1054
Neff 6.9
Searched_HMMs 46136
Date Fri Mar 29 12:26:01 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026769.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026769hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0547 TrpD Anthranilate phos 100.0 1.8E-72 4E-77 507.1 24.0 229 1-229 63-293 (338)
2 PLN02641 anthranilate phosphor 100.0 7E-69 1.5E-73 487.3 23.5 229 1-229 62-290 (343)
3 PRK07394 hypothetical protein; 100.0 6.9E-67 1.5E-71 474.7 24.7 226 1-229 68-301 (342)
4 PRK08136 glycosyl transferase 100.0 2.3E-64 4.9E-69 453.3 23.7 223 1-229 66-295 (317)
5 TIGR01245 trpD anthranilate ph 100.0 2.8E-64 6E-69 456.3 23.5 229 1-229 56-288 (330)
6 PRK09522 bifunctional glutamin 100.0 1.9E-64 4E-69 481.2 22.7 229 1-229 259-489 (531)
7 PF00591 Glycos_transf_3: Glyc 100.0 1.3E-65 2.8E-70 449.1 13.0 217 13-229 2-219 (252)
8 PRK14607 bifunctional glutamin 100.0 9.7E-64 2.1E-68 477.7 23.8 229 1-229 254-485 (534)
9 PRK00188 trpD anthranilate pho 100.0 2.5E-63 5.4E-68 451.5 23.9 229 1-229 62-292 (339)
10 PRK09071 hypothetical protein; 100.0 2.4E-59 5.2E-64 422.1 21.9 218 1-229 67-289 (323)
11 KOG1438 Anthranilate phosphori 100.0 2.3E-59 5E-64 404.8 11.8 217 12-228 102-325 (373)
12 PRK06078 pyrimidine-nucleoside 100.0 4.1E-35 9E-40 272.0 16.6 191 1-230 62-274 (434)
13 TIGR02644 Y_phosphoryl pyrimid 100.0 7.5E-30 1.6E-34 235.4 13.2 158 1-165 60-240 (405)
14 PRK04350 thymidine phosphoryla 100.0 9.1E-29 2E-33 232.0 15.5 191 1-229 140-350 (490)
15 PRK05820 deoA thymidine phosph 99.9 6.6E-23 1.4E-27 190.9 10.3 149 1-152 63-234 (440)
16 TIGR02645 ARCH_P_rylase putati 99.9 1.9E-22 4.2E-27 189.4 11.0 149 1-152 145-311 (493)
17 TIGR02643 T_phosphoryl thymidi 99.9 2.2E-22 4.8E-27 186.8 7.2 149 1-152 62-233 (437)
18 TIGR03327 AMP_phos AMP phospho 99.8 6.9E-21 1.5E-25 179.0 10.1 149 1-152 146-312 (500)
19 COG0213 DeoA Thymidine phospho 97.2 0.00043 9.4E-09 64.4 4.4 137 13-152 78-232 (435)
20 TIGR01457 HAD-SF-IIA-hyp2 HAD- 69.8 72 0.0016 27.5 10.9 120 14-149 5-133 (249)
21 COG1393 ArsC Arsenate reductas 68.6 3.9 8.5E-05 31.8 2.2 90 66-159 6-99 (117)
22 COG0563 Adk Adenylate kinase a 63.9 32 0.0007 28.4 6.9 91 16-111 4-106 (178)
23 PF13344 Hydrolase_6: Haloacid 63.5 9.1 0.0002 28.5 3.3 58 14-71 2-59 (101)
24 PRK10853 putative reductase; P 59.5 8.8 0.00019 29.7 2.6 56 66-121 5-62 (118)
25 cd00287 ribokinase_pfkB_like r 59.4 48 0.001 26.5 7.2 17 33-49 41-57 (196)
26 TIGR01616 nitro_assoc nitrogen 56.9 9.1 0.0002 30.1 2.3 56 66-121 6-63 (126)
27 PRK10444 UMP phosphatase; Prov 56.7 1.3E+02 0.0029 26.0 10.9 71 14-84 5-80 (248)
28 cd01554 EPT-like Enol pyruvate 53.5 25 0.00053 32.4 5.0 95 42-152 97-198 (408)
29 PRK05703 flhF flagellar biosyn 53.0 1.5E+02 0.0032 28.1 10.1 136 13-159 222-367 (424)
30 PLN02428 lipoic acid synthase 50.5 1.4E+02 0.0029 27.8 9.2 110 34-153 197-317 (349)
31 cd04724 Tryptophan_synthase_al 48.2 83 0.0018 27.2 7.2 90 66-157 8-110 (242)
32 PF03960 ArsC: ArsC family; I 48.1 14 0.00031 27.7 2.1 90 67-159 2-95 (110)
33 cd03035 ArsC_Yffb Arsenate Red 45.5 17 0.00036 27.5 2.1 54 67-120 5-60 (105)
34 TIGR01458 HAD-SF-IIA-hyp3 HAD- 45.0 73 0.0016 27.6 6.4 73 14-86 5-86 (257)
35 PF02641 DUF190: Uncharacteriz 44.8 40 0.00087 25.2 4.1 30 134-163 17-47 (101)
36 cd03033 ArsC_15kD Arsenate Red 44.7 18 0.00039 27.8 2.2 56 67-122 6-63 (113)
37 COG0761 lytB 4-Hydroxy-3-methy 41.6 66 0.0014 29.1 5.5 125 34-159 106-246 (294)
38 PF07131 DUF1382: Protein of u 40.9 23 0.0005 24.3 1.9 22 76-97 14-35 (61)
39 COG0106 HisA Phosphoribosylfor 40.7 1.4E+02 0.003 26.3 7.3 78 72-151 31-123 (241)
40 PF08844 DUF1815: Domain of un 39.7 1.5E+02 0.0032 22.4 6.3 50 141-195 21-70 (105)
41 PRK12379 propionate/acetate ki 39.1 1.2E+02 0.0026 28.6 7.2 129 41-195 83-233 (396)
42 COG0773 MurC UDP-N-acetylmuram 38.7 3.7E+02 0.008 26.0 10.7 126 13-159 11-142 (459)
43 TIGR00676 fadh2 5,10-methylene 35.1 67 0.0014 28.3 4.6 69 78-159 21-95 (272)
44 PRK12724 flagellar biosynthesi 35.1 4.1E+02 0.0089 25.4 10.1 137 13-159 224-369 (432)
45 PRK01184 hypothetical protein; 34.0 2.3E+02 0.0049 22.7 7.3 21 126-146 81-101 (184)
46 COG3448 CBS-domain-containing 33.7 2.1E+02 0.0045 26.4 7.4 89 44-157 186-281 (382)
47 PF03721 UDPG_MGDP_dh_N: UDP-g 33.0 48 0.001 27.5 3.2 25 15-46 3-27 (185)
48 COG2085 Predicted dinucleotide 33.0 72 0.0016 27.5 4.3 79 29-113 11-89 (211)
49 TIGR00014 arsC arsenate reduct 32.5 59 0.0013 24.7 3.4 53 67-119 5-62 (114)
50 PRK07058 acetate kinase; Provi 32.2 1.3E+02 0.0028 28.5 6.1 59 127-195 176-237 (396)
51 cd03032 ArsC_Spx Arsenate Redu 32.2 45 0.00098 25.2 2.7 59 67-125 6-68 (115)
52 PRK10026 arsenate reductase; P 31.8 46 0.00099 26.7 2.7 56 67-122 8-67 (141)
53 TIGR00677 fadh2_euk methylenet 31.2 93 0.002 27.7 4.9 70 78-160 22-97 (281)
54 PRK02308 uvsE putative UV dama 30.2 43 0.00093 30.2 2.6 96 61-158 37-153 (303)
55 KOG4201 Anthranilate synthase 29.8 1.8E+02 0.0039 25.5 6.1 118 69-187 88-223 (289)
56 PF13344 Hydrolase_6: Haloacid 29.0 77 0.0017 23.5 3.4 64 46-109 9-79 (101)
57 PRK11889 flhF flagellar biosyn 28.8 4.9E+02 0.011 25.0 9.3 132 13-159 242-387 (436)
58 TIGR01081 mpl UDP-N-acetylmura 28.8 2.4E+02 0.0052 26.4 7.5 117 32-159 13-137 (448)
59 COG2185 Sbm Methylmalonyl-CoA 28.5 2.3E+02 0.0049 22.9 6.2 69 72-159 27-100 (143)
60 COG0654 UbiH 2-polyprenyl-6-me 28.4 85 0.0018 28.7 4.3 40 29-68 12-60 (387)
61 PF07521 RMMBL: RNA-metabolisi 28.1 44 0.00095 20.9 1.7 35 126-160 7-41 (43)
62 PRK13111 trpA tryptophan synth 27.9 3.2E+02 0.0069 24.0 7.6 58 101-158 64-125 (258)
63 PF14567 SUKH_5: SMI1-KNR4 cel 27.9 1.8E+02 0.0038 23.2 5.4 91 96-186 22-120 (132)
64 cd04723 HisA_HisF Phosphoribos 27.8 3.5E+02 0.0075 23.1 7.8 78 71-151 34-125 (233)
65 PRK00162 glpE thiosulfate sulf 27.5 1.5E+02 0.0034 21.5 4.9 84 71-159 6-91 (108)
66 PRK14033 citrate synthase; Pro 27.2 1E+02 0.0022 28.7 4.6 20 26-45 190-209 (375)
67 PRK08850 2-octaprenyl-6-methox 26.8 83 0.0018 28.8 3.9 40 30-69 15-67 (405)
68 COG2313 IndA Uncharacterized e 25.7 1.1E+02 0.0023 27.4 4.1 103 19-128 103-240 (310)
69 cd04732 HisA HisA. Phosphorib 25.7 3.2E+02 0.007 22.8 7.2 81 71-153 28-123 (234)
70 cd00923 Cyt_c_Oxidase_Va Cytoc 25.6 81 0.0018 24.0 2.9 64 48-113 34-98 (103)
71 PRK01655 spxA transcriptional 25.5 65 0.0014 25.2 2.6 56 67-122 6-65 (131)
72 PRK12350 citrate synthase 2; P 25.2 2.1E+02 0.0046 26.5 6.2 82 26-109 168-263 (353)
73 TIGR02023 BchP-ChlP geranylger 24.7 1E+02 0.0022 28.1 4.1 40 30-69 11-54 (388)
74 cd04731 HisF The cyclase subun 24.0 2.5E+02 0.0055 23.8 6.2 76 33-108 153-240 (243)
75 TIGR01617 arsC_related transcr 24.0 82 0.0018 23.8 2.8 56 67-122 5-64 (117)
76 cd06108 Ec2MCS_like Escherichi 23.9 1.4E+02 0.003 27.8 4.8 19 27-45 179-197 (363)
77 PRK09432 metF 5,10-methylenete 23.8 1.7E+02 0.0036 26.3 5.2 46 102-160 75-120 (296)
78 PRK13586 1-(5-phosphoribosyl)- 23.6 3.9E+02 0.0084 23.0 7.3 80 72-153 30-123 (232)
79 cd00537 MTHFR Methylenetetrahy 23.5 2.2E+02 0.0047 24.8 5.8 73 75-160 18-96 (274)
80 PF01364 Peptidase_C25: Peptid 23.3 1.3E+02 0.0029 27.5 4.6 69 89-162 4-75 (378)
81 PRK00994 F420-dependent methyl 23.0 1.3E+02 0.0028 26.7 4.1 63 41-108 61-127 (277)
82 cd03008 TryX_like_RdCVF Trypar 23.0 76 0.0017 25.5 2.6 33 64-96 67-99 (146)
83 TIGR01356 aroA 3-phosphoshikim 22.8 1.6E+02 0.0034 27.1 4.9 120 14-152 204-340 (409)
84 KOG3040 Predicted sugar phosph 22.8 3.1E+02 0.0068 24.0 6.3 74 13-87 10-89 (262)
85 CHL00200 trpA tryptophan synth 22.7 3.9E+02 0.0084 23.6 7.2 57 102-159 68-127 (263)
86 cd01555 UdpNAET UDP-N-acetylgl 22.7 57 0.0012 29.8 2.0 96 41-152 96-195 (400)
87 cd06115 AthCS_per_like Arabido 22.6 1.4E+02 0.0031 28.2 4.7 19 27-45 220-238 (410)
88 cd06112 citrate_synt_like_1_1 22.2 2.8E+02 0.0061 25.8 6.5 78 27-109 185-279 (373)
89 PRK13344 spxA transcriptional 21.6 66 0.0014 25.2 1.9 56 67-122 6-65 (132)
90 PRK00341 hypothetical protein; 21.5 1.4E+02 0.0031 22.0 3.6 32 118-149 8-41 (91)
91 PRK05868 hypothetical protein; 21.5 1.8E+02 0.004 26.4 5.1 40 30-69 12-59 (372)
92 PLN00093 geranylgeranyl diphos 21.3 1.4E+02 0.0031 28.2 4.4 40 30-69 50-93 (450)
93 cd03034 ArsC_ArsC Arsenate Red 21.2 90 0.002 23.5 2.5 54 67-120 5-62 (112)
94 COG1049 AcnB Aconitase B [Ener 21.0 53 0.0012 32.9 1.5 26 15-40 480-512 (852)
95 PRK12559 transcriptional regul 20.9 75 0.0016 24.9 2.1 54 67-120 6-63 (131)
96 PRK08244 hypothetical protein; 20.9 1.7E+02 0.0037 27.6 4.9 45 17-68 7-59 (493)
97 PRK08013 oxidoreductase; Provi 20.8 1.9E+02 0.0042 26.4 5.1 40 30-69 14-67 (400)
98 KOG1533 Predicted GTPase [Gene 20.6 4E+02 0.0087 23.8 6.6 64 17-82 7-82 (290)
99 PF13486 Dehalogenase: Reducti 20.5 93 0.002 28.1 2.9 26 186-217 126-151 (308)
100 COG3473 Maleate cis-trans isom 20.5 4.4E+02 0.0095 23.0 6.7 96 31-159 56-151 (238)
101 PRK08849 2-octaprenyl-3-methyl 20.4 2.1E+02 0.0045 26.0 5.2 48 15-69 6-67 (384)
102 PRK13957 indole-3-glycerol-pho 20.3 3.7E+02 0.0081 23.6 6.5 123 69-191 58-192 (247)
103 PLN02446 (5-phosphoribosyl)-5- 20.2 4E+02 0.0086 23.7 6.7 78 72-153 43-136 (262)
104 TIGR00007 phosphoribosylformim 20.1 4.5E+02 0.0098 21.9 6.9 81 72-154 28-123 (230)
105 COG0429 Predicted hydrolase of 20.1 1.4E+02 0.003 27.6 3.9 40 128-168 82-124 (345)
106 PRK07178 pyruvate carboxylase 20.1 2.2E+02 0.0047 27.1 5.4 72 15-89 74-155 (472)
No 1
>COG0547 TrpD Anthranilate phosphoribosyltransferase [Amino acid transport and metabolism]
Probab=100.00 E-value=1.8e-72 Score=507.12 Aligned_cols=229 Identities=54% Similarity=0.884 Sum_probs=221.4
Q ss_pred CccccccccCCC-CceeEeccCCCCCCCCcchHHHHHHHHcCCCcEEeeCCCCCCCcchHHHHHHHcCCCCCCCHHHHHH
Q 026769 1 MIKYATKVEGLG-DAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQGSRSSSSACGSADVLEALGVVIDLDPEGVRR 79 (233)
Q Consensus 1 ~~~~~~~~~~~~-~~~di~Gtg~Dg~~t~nist~aA~vlA~~G~~V~~HG~~~~~~k~Gs~dvle~LGi~~~~~~~~a~~ 79 (233)
|++++.+++.++ ..+|+|||||||++||||||++|||+|++|+||+|||||++|||+||+|+||+|||+++.+++++++
T Consensus 63 m~~~~~~~~~p~~~~vDi~GTGGDg~~T~NiSt~aA~v~A~~Gv~VaKHGnrs~sSksGsaDvleaLGv~l~~~~e~~~~ 142 (338)
T COG0547 63 MREHAPKLPVPAADPVDIVGTGGDGANTINISTAAAIVAAAAGVPVAKHGNRSVSSKSGSADVLEALGVNLELSPEQAAR 142 (338)
T ss_pred HHHhcccCCCCCCCCCCeecCCCCCCCcccchHHHHHHHHhCCCcEEeECCCCCCCCCcHHHHHHHcCCCCCCCHHHHHH
Confidence 577777777654 3499999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCeeeeecccccHHhhhhHHHHhhcCCCchhHHhhhccCCCCCCeEEEeecChhhHHHHHHHHHHcCCCeEEEEee
Q 026769 80 CVDEAGIGFMMSTKYHPAMKFVRPVRKKLKVKTVFNILGPMLNPACVPFAVVGVYNENLVLKMANALQRFGLKRALVVHS 159 (233)
Q Consensus 80 ~L~~~gi~fl~~~~~~P~l~~l~~~R~~Lg~Rt~~Ntl~~LlNP~~~~~~v~Gv~h~~~~~~~a~~l~~lg~~~~lvv~G 159 (233)
+|++.||+|||+|.|||+|++++++|++||+||+||++|||+||+++++||+|||||+|.++++++++.+|.++++||||
T Consensus 143 ~l~~~g~~FlfAp~~hp~~k~v~~vR~~LG~RTifN~LGPL~NPa~~~~qliGV~~p~~~~~~A~~l~~LG~~ralvV~G 222 (338)
T COG0547 143 ALEETGIGFLFAPAYHPAMKHVAPVRKELGVRTIFNLLGPLLNPARAKLQLIGVYHPELVELLAEALRLLGVERALVVHG 222 (338)
T ss_pred HHHhcCeEEEEccccCHHHHHHHHHHHHcCCCchHHhhccccCCCCCCceEEEEeCHHHHHHHHHHHHHhCcceEEEEEC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred -CCccccCCCCCeEEEEEeCCeEEEEEeCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCchhhhhhc
Q 026769 160 -EGLDEMSPLGPGLILDVTQEKIERFSFDPLDYGIPRCTLESLQGGGPAYNAEVLRRVLSGERGAIADALV 229 (233)
Q Consensus 160 -eG~dE~s~~~~t~v~~~~~g~i~~~~i~P~~~gl~~~~~~~l~~~~~~~~a~~~~~vL~G~~~~~~d~~~ 229 (233)
||+||++|.++|.|+++++|++++|+++|++||+++.++++++.+|+++|++++++||+|+.++.+|+|+
T Consensus 223 ~~GlDE~~~~~~t~v~~l~~g~i~~~~l~pe~~Gl~~~~~~~l~~~~~~ena~~~~~vL~G~~~~~~d~v~ 293 (338)
T COG0547 223 LEGLDEVTPTGTTLVAELKDGEIREYTLTPEDFGLERAPLEDLPGGDPEENAEILRAVLAGEEGPARDAVA 293 (338)
T ss_pred CCCcccccCCCCceEEEEcCCceEEEEeCHHhcCCCCCchhhcCCCCHHHHHHHHHHHHCCCCcchHHHHH
Confidence 8999999999999999999999999999999999999999999999999999999999998899999875
No 2
>PLN02641 anthranilate phosphoribosyltransferase
Probab=100.00 E-value=7e-69 Score=487.30 Aligned_cols=229 Identities=84% Similarity=1.274 Sum_probs=220.8
Q ss_pred CccccccccCCCCceeEeccCCCCCCCCcchHHHHHHHHcCCCcEEeeCCCCCCCcchHHHHHHHcCCCCCCCHHHHHHH
Q 026769 1 MIKYATKVEGLGDAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQGSRSSSSACGSADVLEALGVVIDLDPEGVRRC 80 (233)
Q Consensus 1 ~~~~~~~~~~~~~~~di~Gtg~Dg~~t~nist~aA~vlA~~G~~V~~HG~~~~~~k~Gs~dvle~LGi~~~~~~~~a~~~ 80 (233)
|++++.+++..+..+|+|||||||++|||+||++|+++|++|+||+|||||++||++||+|+||+|||+++.++++++++
T Consensus 62 ~~~~~~~~~~~~~~~D~~gtGGdg~~t~nist~aa~v~A~~G~~V~kHGnr~~ss~~GsaDvLeaLGi~~~~~~~~~~~~ 141 (343)
T PLN02641 62 MIKRARKVDGLVDAVDIVGTGGDGANTVNISTGSSILAAACGAKVAKQGNRSSSSACGSADVLEALGVAIDLGPEGVKRC 141 (343)
T ss_pred HHHhCCCCCCCCCCCceeCCCCCCCCccccHHHHHHHHHhCCCeEEEeCCCCCCCccCHHHHHHHcCCCCCCCHHHHHHH
Confidence 56777777654558999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCeeeeecccccHHhhhhHHHHhhcCCCchhHHhhhccCCCCCCeEEEeecChhhHHHHHHHHHHcCCCeEEEEeeC
Q 026769 81 VDEAGIGFMMSTKYHPAMKFVRPVRKKLKVKTVFNILGPMLNPACVPFAVVGVYNENLVLKMANALQRFGLKRALVVHSE 160 (233)
Q Consensus 81 L~~~gi~fl~~~~~~P~l~~l~~~R~~Lg~Rt~~Ntl~~LlNP~~~~~~v~Gv~h~~~~~~~a~~l~~lg~~~~lvv~Ge 160 (233)
|++.||+|+++|.|||+|+++.++|++||+||+||+++||+||++++++|+|||||+|.++|+++++.+|.++++||||+
T Consensus 142 l~~~g~~fl~a~~~hPa~~~~~~~R~~LG~RT~fN~lgpL~NPa~~~~~v~GV~~~~~~~~~a~al~~lG~~~alVv~G~ 221 (343)
T PLN02641 142 VEEVGIGFMMAPKYHPAMKIVAPVRKKLKVKTVFNILGPMLNPARVPHAVVGVYHESLVEKMAKALQRFGMKRALVVHSE 221 (343)
T ss_pred HHhcCcEEEechhhCHHHHHHHHHHHHhCCCcHHHHHHHhcCCCCCCceEEeeeCHHHHHHHHHHHHHcCCCeEEEEecC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CccccCCCCCeEEEEEeCCeEEEEEeCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCchhhhhhc
Q 026769 161 GLDEMSPLGPGLILDVTQEKIERFSFDPLDYGIPRCTLESLQGGGPAYNAEVLRRVLSGERGAIADALV 229 (233)
Q Consensus 161 G~dE~s~~~~t~v~~~~~g~i~~~~i~P~~~gl~~~~~~~l~~~~~~~~a~~~~~vL~G~~~~~~d~~~ 229 (233)
|+||++|.++|++|++++|++++++|+|+||||+.++++++.++++++|++++++||+|+.++++|+|+
T Consensus 222 G~DEis~~g~t~v~~~~~g~i~~~~~~p~d~Gl~~~~~~~l~~~~~~~na~~~~~vL~G~~~~~~d~v~ 290 (343)
T PLN02641 222 GLDEMSPLGPGDVLEVTPEKIEEFSFDPLDFGIPRCTLEDLRGGDPDYNAKVLRDVLSGEKGAIADALI 290 (343)
T ss_pred CCCccccCcceEEEEEeCCceEEEEeCHHHcCCCcCCHHhcCCCCHHHHHHHHHHHHCCCCcchHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999888888874
No 3
>PRK07394 hypothetical protein; Provisional
Probab=100.00 E-value=6.9e-67 Score=474.69 Aligned_cols=226 Identities=21% Similarity=0.275 Sum_probs=213.2
Q ss_pred CccccccccCCC--CceeEeccCCCCC-CCCcchHHHHHHHHcCCCcEEeeCCCCCCCcch--HHHHHHHcCCCCCC-CH
Q 026769 1 MIKYATKVEGLG--DAVDIVGTGGDGA-NTVNISTGASILAAACGAKVAKQGSRSSSSACG--SADVLEALGVVIDL-DP 74 (233)
Q Consensus 1 ~~~~~~~~~~~~--~~~di~Gtg~Dg~-~t~nist~aA~vlA~~G~~V~~HG~~~~~~k~G--s~dvle~LGi~~~~-~~ 74 (233)
|++++.+++... .++|+|||||||+ +||||||++|+++|++|+||+|||||++|||+| |+|+||+|||+++. ++
T Consensus 68 ~~~~~~~~~~~~~~~~~d~~GtggDG~~~t~NiSt~aA~v~A~~Gv~V~kHGnr~~ssk~GvtsaDvLe~LGv~~~~~~~ 147 (342)
T PRK07394 68 YDELGPKLQSPSNQRPPIVFGMPYDGRSRTAPIYPLTALILAAAGQPVVLHGGDRMPTKYGVPLVELWQGLGVDLTGLSL 147 (342)
T ss_pred HHHhCCCCCCCCCCCceeEEeCCCCCCCCCcccHHHHHHHHHHCCCeEEEECCCCCCCCCCchHHHHHHHCCCCCCCCCH
Confidence 467777775432 4789999999997 799999999999999999999999999999999 99999999999998 99
Q ss_pred HHHHHHHHHcCeeeeecccccHHhhhhHHHHhhcCCCchhHHhhhccCC-CCCCeEEEeecChhhHHHHHHHHHHcCCCe
Q 026769 75 EGVRRCVDEAGIGFMMSTKYHPAMKFVRPVRKKLKVKTVFNILGPMLNP-ACVPFAVVGVYNENLVLKMANALQRFGLKR 153 (233)
Q Consensus 75 ~~a~~~L~~~gi~fl~~~~~~P~l~~l~~~R~~Lg~Rt~~Ntl~~LlNP-~~~~~~v~Gv~h~~~~~~~a~~l~~lg~~~ 153 (233)
+++.++|++.||+||++|.|||+|+++.++|++||+||+||+++||+|| ++++++|+|||||+|.++|+++++.+|.++
T Consensus 148 ~~~~~~l~~~g~~Fl~ap~~hP~m~~~~~vR~~Lg~RT~fN~lgpL~NP~a~~~~~v~Gv~~~~~~~~~a~~l~~lg~~~ 227 (342)
T PRK07394 148 EQVQEGFEQTGLAFIYQPDHFPLAESLIPYRDEIGKRPPLATLELIWTPHQGDHHLVSGFVHPPTEARAWEALELRGETN 227 (342)
T ss_pred HHHHHHHHHcCceeeechhhCHHHHHHHHHHHHhCCCCHHHHHHHhcCCCCCCCceEEEeeCHHHHHHHHHHHHHcCCCe
Confidence 9999999999999999999999999999999999999999999999999 588899999999999999999999999999
Q ss_pred EEEEee-CCccccCCCCCeEEEEEeCCeEEEEEeCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCchhhhhhc
Q 026769 154 ALVVHS-EGLDEMSPLGPGLILDVTQEKIERFSFDPLDYGIPRCTLESLQGGGPAYNAEVLRRVLSGERGAIADALV 229 (233)
Q Consensus 154 ~lvv~G-eG~dE~s~~~~t~v~~~~~g~i~~~~i~P~~~gl~~~~~~~l~~~~~~~~a~~~~~vL~G~~~~~~d~~~ 229 (233)
++|||| ||+||+++.++|.++++++|++.+++|+|+|||++.+ +++.+++++|++++++||+|+.++.+|+|+
T Consensus 228 ~~vv~G~~G~dE~s~~~~t~v~~~~~g~i~~~~i~p~d~G~~~~---~l~~~~~~~na~~~~~vl~G~~~~~~~~v~ 301 (342)
T PRK07394 228 FTTVKGLEGSCDLPISRTAIIGRVQNGHFERLILHPRDYGCGGK---DVPWESTEEWLEQAQAALNGEPGPLTQALI 301 (342)
T ss_pred EEEEEcCCCceeccCCCCeEEEEEcCCeEEEEEECHHHcCCCcc---cCCCCCHHHHHHHHHHHHCCCCcchhHHHH
Confidence 999999 9999999999999999999999999999999999975 457889999999999999999888888764
No 4
>PRK08136 glycosyl transferase family protein; Provisional
Probab=100.00 E-value=2.3e-64 Score=453.30 Aligned_cols=223 Identities=18% Similarity=0.213 Sum_probs=208.3
Q ss_pred CccccccccCCC---CceeEeccCCCCCCCCcchHHHHHHHHcCCCcEEeeCCCCCCCcchHHHHHHHcCCCCCCCHHHH
Q 026769 1 MIKYATKVEGLG---DAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQGSRSSSSACGSADVLEALGVVIDLDPEGV 77 (233)
Q Consensus 1 ~~~~~~~~~~~~---~~~di~Gtg~Dg~~t~nist~aA~vlA~~G~~V~~HG~~~~~~k~Gs~dvle~LGi~~~~~~~~a 77 (233)
|++++.+++... ..+|+||||||++ ||||||++|+++|++|+||+|||||++|+|+||+|+||+|||+++.+++++
T Consensus 66 ~~~~~~~~~~~~~~~~~iD~~gtgGd~~-t~nist~aA~vlA~~G~~V~kHGnr~vssk~gsadvleaLGi~~~~~~~~~ 144 (317)
T PRK08136 66 MQAHTIPLTPPAGRPMPVVIPSYNGARK-QANLTPLLALLLAREGVPVLVHGVSEDPTRVTSAEIFEALGIPPTLHADQA 144 (317)
T ss_pred HHHhCCcCCCCCCCCceEEeCCCCCCCC-CcChHHHHHHHHHHCCCeEEEECCCCCCCcccHHHHHHHcCCCCCCCHHHH
Confidence 466777775432 3799999999965 999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCeeeeecccccHHhhhhHHHHhhcCCCchhHHhhhccCC--CCCCeEEEeecChhhHHHHHHHHHHcCCCeEE
Q 026769 78 RRCVDEAGIGFMMSTKYHPAMKFVRPVRKKLKVKTVFNILGPMLNP--ACVPFAVVGVYNENLVLKMANALQRFGLKRAL 155 (233)
Q Consensus 78 ~~~L~~~gi~fl~~~~~~P~l~~l~~~R~~Lg~Rt~~Ntl~~LlNP--~~~~~~v~Gv~h~~~~~~~a~~l~~lg~~~~l 155 (233)
++.|++.||+||++|.|||+|+++.++|++||+||+||+++||+|| ++++++|+|||||+|.++|+++++.+|. +++
T Consensus 145 ~~~l~~~g~~fl~ap~~hPa~~~~~~vR~~LG~RT~fN~lgpL~NP~~a~~~~~v~Gv~~~~~~~~~a~~l~~lg~-~al 223 (317)
T PRK08136 145 QAKLAEGQPAFIPVGVLCPPLARLLALRWRMGVRNSAHTLAKLATPFAEGAALRLSSYTHPEYRDRLAEFFSDIGA-RAL 223 (317)
T ss_pred HHHHHhcCeEEEEhHHhCHHHHHHHHHHHHhCCCCHHHHHHHhcCccccCCCeEEEeeeChHHHHHHHHHHHHcCC-CEE
Confidence 9999999999999999999999999999999999999999999999 6899999999999999999999999998 999
Q ss_pred EEee-CCccccCCCCCeEEEEEeCCeEEEEEeCCCCCCCCCCCCCCC-CCCCHHHHHHHHHHHHCCCCchhhhhhc
Q 026769 156 VVHS-EGLDEMSPLGPGLILDVTQEKIERFSFDPLDYGIPRCTLESL-QGGGPAYNAEVLRRVLSGERGAIADALV 229 (233)
Q Consensus 156 vv~G-eG~dE~s~~~~t~v~~~~~g~i~~~~i~P~~~gl~~~~~~~l-~~~~~~~~a~~~~~vL~G~~~~~~d~~~ 229 (233)
|||| ||+||+||+++|+++++++|+++ +.++|+++|++.++ ++ .++|+++|++++++||+|+ ++.+|+|+
T Consensus 224 vv~G~~G~dE~s~~~~t~v~~~~~g~~~-~~~~p~~~g~~~~~--~~~~~~~~~~na~~~~~vL~G~-~~~~d~v~ 295 (317)
T PRK08136 224 LMRGTEGEVYANPRRCPQIDWIHDGGCR-VLVERQSGSADEPP--ELPAAKDAATTAAWIERVLAGE-VPVPESIA 295 (317)
T ss_pred EEEcCCCceeecCCCCceEEEEeCCEEE-EEECHHHcCCccCc--hhccCCCHHHHHHHHHHHHCCC-CCcchHHH
Confidence 9999 99999999999999999999988 99999999999876 55 7889999999999999996 56667764
No 5
>TIGR01245 trpD anthranilate phosphoribosyltransferase. In many widely different species, including E. coli, Thermotoga maritima, and Archaeoglobus fulgidus, this enzymatic domain (anthranilate phosphoribosyltransferase) is found C-terminal to glutamine amidotransferase; the fusion protein is designated anthranilate synthase component II (EC 4.1.3.27)
Probab=100.00 E-value=2.8e-64 Score=456.26 Aligned_cols=229 Identities=56% Similarity=0.906 Sum_probs=218.2
Q ss_pred CccccccccCC--CCceeEeccCCCCCCCCcchHHHHHHHHcCCCcEEeeCCCCCCCcchHHHHHHHcCCCCCCCHHHHH
Q 026769 1 MIKYATKVEGL--GDAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQGSRSSSSACGSADVLEALGVVIDLDPEGVR 78 (233)
Q Consensus 1 ~~~~~~~~~~~--~~~~di~Gtg~Dg~~t~nist~aA~vlA~~G~~V~~HG~~~~~~k~Gs~dvle~LGi~~~~~~~~a~ 78 (233)
|++++.+++.. ..++|+|||||||++|||+||++|+++|++|+||+|||++++++++|++|+||+|||+++.++++++
T Consensus 56 ~~~~~~~~~~~~~~~~iD~~gtggdg~~t~nist~~a~vlA~~G~~V~kHG~r~~~s~~Gs~d~le~LGi~~~~s~~~~~ 135 (330)
T TIGR01245 56 MREHAVKVPGRPVEDLVDIVGTGGDGANTINISTASAFVAAAAGVKVAKHGNRSVSSKSGSADVLEALGVNLDLGPEKVA 135 (330)
T ss_pred HHHhCCCCCCccCCCcccccCCCCCCCCccccHHHHHHHHHhCCCEEEEeCCCCCCCCccHHHHHHHcCCCCCCCHHHHH
Confidence 45666666542 3589999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCeeeeecccccHHhhhhHHHHhhcCCCchhHHhhhccCCCCCCeEEEeecChhhHHHHHHHHHHcCCCeEEEEe
Q 026769 79 RCVDEAGIGFMMSTKYHPAMKFVRPVRKKLKVKTVFNILGPMLNPACVPFAVVGVYNENLVLKMANALQRFGLKRALVVH 158 (233)
Q Consensus 79 ~~L~~~gi~fl~~~~~~P~l~~l~~~R~~Lg~Rt~~Ntl~~LlNP~~~~~~v~Gv~h~~~~~~~a~~l~~lg~~~~lvv~ 158 (233)
+.|++.||+|+++|.|||+|+++.++|++||+||+||+++||+||++++++|+|||||+|.++|+++++.+|.++++||+
T Consensus 136 ~~l~~~g~~f~~~~~~~P~~~~l~~lR~~lg~rT~~N~lgpL~NP~~~~~~v~Gv~~~~~~~~~a~~~~~lg~~~~~vv~ 215 (330)
T TIGR01245 136 RSLEETGIGFLFAPLYHPAMKHVAPVRRELGVRTVFNLLGPLTNPARPKYQVIGVYDPDLVEVMAEALKNLGVKRALVVH 215 (330)
T ss_pred HHHHHhCcEEeechhhCHHHHHHHHHHHHhCCCCHHHHHHHhcCCCCCCCEEEcccCHHHHHHHHHHHHHhCCCeEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred e-CCccccCCCCCeEEEEEeCCeEEEEEeCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCC-chhhhhhc
Q 026769 159 S-EGLDEMSPLGPGLILDVTQEKIERFSFDPLDYGIPRCTLESLQGGGPAYNAEVLRRVLSGER-GAIADALV 229 (233)
Q Consensus 159 G-eG~dE~s~~~~t~v~~~~~g~i~~~~i~P~~~gl~~~~~~~l~~~~~~~~a~~~~~vL~G~~-~~~~d~~~ 229 (233)
| ||+||++|.++|++|++++|++.+++|+|++||++..++++++.+++++|+++++++|+|+. ++++|+|+
T Consensus 216 G~~G~dE~s~~~~t~v~~~~~g~~~~~~i~p~~~g~~~~~~~~~~~~~~~~~a~~~~~~l~G~~~~~~~~~v~ 288 (330)
T TIGR01245 216 GDDGLDEISLTGPTTVAELKDGEIREYTLDPEDFGLPRAPLEELAGGSPEENAEILRDILRGKGSGAKRDIVA 288 (330)
T ss_pred CCCCceeecCCCcEEEEEEECCEEEEEeCCHHHcCCCcCCHhhcCCCCHHHHHHHHHHHHCCCCCCcHHHHHH
Confidence 9 99999999999999999999999999999999999988899998999999999999999994 78888765
No 6
>PRK09522 bifunctional glutamine amidotransferase/anthranilate phosphoribosyltransferase; Provisional
Probab=100.00 E-value=1.9e-64 Score=481.22 Aligned_cols=229 Identities=41% Similarity=0.745 Sum_probs=217.9
Q ss_pred CccccccccCC-CCceeEeccCCCCCCCCcchHHHHHHHHcCCCcEEeeCCCCCCCcchHHHHHHHcCCCCCCCHHHHHH
Q 026769 1 MIKYATKVEGL-GDAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQGSRSSSSACGSADVLEALGVVIDLDPEGVRR 79 (233)
Q Consensus 1 ~~~~~~~~~~~-~~~~di~Gtg~Dg~~t~nist~aA~vlA~~G~~V~~HG~~~~~~k~Gs~dvle~LGi~~~~~~~~a~~ 79 (233)
|++++.+++.. ..++|+|||||||++|||+||++|+++|++|+||+|||||++|+|+||+|+||+|||+++.+++++++
T Consensus 259 ~~~~~~~~~~~~~~~iD~~gtGgdg~~t~nist~aa~v~A~~Gv~V~kHG~r~~ss~~GsadvlealGi~~~~~~~~~~~ 338 (531)
T PRK09522 259 LLENAAPFPRPDYLFADIVGTGGDGSNSINISTASAFVAAACGLKVAKHGNRSVSSKSGSSDLLAAFGINLDMNADKSRQ 338 (531)
T ss_pred HHHhCCCCCCCCCCcccccCCCCCCCCCcccHHHHHHHHHhCCCcEEEeCCCCCCCCccHHHHHHHcCCCCCCCHHHHHH
Confidence 56777777653 35799999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCeeeeecccccHHhhhhHHHHhhcCCCchhHHhhhccCCCCCCeEEEeecChhhHHHHHHHHHHcCCCeEEEEee
Q 026769 80 CVDEAGIGFMMSTKYHPAMKFVRPVRKKLKVKTVFNILGPMLNPACVPFAVVGVYNENLVLKMANALQRFGLKRALVVHS 159 (233)
Q Consensus 80 ~L~~~gi~fl~~~~~~P~l~~l~~~R~~Lg~Rt~~Ntl~~LlNP~~~~~~v~Gv~h~~~~~~~a~~l~~lg~~~~lvv~G 159 (233)
+|++.||+|+++|.|||+|++++++|++||+||+||+++||+||++++++|+|||||+|.++|+++++.+|.++++||||
T Consensus 339 ~l~~~g~~fl~ap~~hpam~~~~~~R~~Lg~rT~fN~lgpL~NPa~~~~~v~Gv~~~~~~~~~a~~l~~lG~~~~~vv~G 418 (531)
T PRK09522 339 ALDELGVCFLFAPKYHTGFRHAMPVRQQLKTRTLFNVLGPLINPAHPPLALIGVYSPELVLPIAETLRVLGYQRAAVVHS 418 (531)
T ss_pred HHHHhCcEEEEhhHhCHHHHHHHHHHHHhCCCcHHHHHHHhcCCCCCCcEEEEeeCHHHHHHHHHHHHHhCCCeEEEEEC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccccCCCCCeEEEEEeCCeEEEEEeCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCC-chhhhhhc
Q 026769 160 EGLDEMSPLGPGLILDVTQEKIERFSFDPLDYGIPRCTLESLQGGGPAYNAEVLRRVLSGER-GAIADALV 229 (233)
Q Consensus 160 eG~dE~s~~~~t~v~~~~~g~i~~~~i~P~~~gl~~~~~~~l~~~~~~~~a~~~~~vL~G~~-~~~~d~~~ 229 (233)
+|+||+|+.++|+|+++++|++.+++|+|+|||++.++++++.++++++|++++++||+|+. .+.+|+|+
T Consensus 419 ~G~DEis~~~~t~v~~~~~g~i~~~~~~P~d~Gl~~~~~~~i~g~~~~~na~~~~~vl~G~~~~~~~~~v~ 489 (531)
T PRK09522 419 GGMDEVSLHAPTIVAELHDGEIKSYQLTAEDFGLTPYHQEQLAGGTPEENRDILTRLLQGKGDAAHEAAVA 489 (531)
T ss_pred CCccccCCCCceEEEEEcCCeEEEEEECHHHcCCCCCCHHHhcCCCHHHHHHHHHHHHCCCCCchhHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999994 34456654
No 7
>PF00591 Glycos_transf_3: Glycosyl transferase family, a/b domain Prosite entry for Thymidine and pyrimidine-nucleoside phosphorylases; InterPro: IPR000312 The glycosyl transferase family includes anthranilate phosphoribosyltransferase (TrpD, 2.4.2.18 from EC) and thymidine phosphorylase (2.4.2.2 from EC). All these proteins can transfer a phosphorylated ribose substrate. Thymidine phosphorylase (2.4.2.2 from EC) catalyses the reversible phosphorolysis of thymidine, deoxyuridine and their analogues to their respective bases and 2-deoxyribose 1-phosphate. This enzyme regulates the availability of thymidine and is therefore essential to nucleic acid metabolism.; GO: 0016757 transferase activity, transferring glycosyl groups, 0008152 metabolic process; PDB: 1V8G_B 2ELC_B 2BPQ_A 1ZVW_B 3QR9_B 3H5Q_A 1KHD_A 1KGZ_B 1AZY_A 1OTP_A ....
Probab=100.00 E-value=1.3e-65 Score=449.11 Aligned_cols=217 Identities=50% Similarity=0.836 Sum_probs=204.9
Q ss_pred CceeEeccCCCCCCCCcchHHHHHHHHcCCCcEEeeCCCCCCCcchHHHHHHHcCCCCCCCHHHHHHHHHHcCeeeeecc
Q 026769 13 DAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQGSRSSSSACGSADVLEALGVVIDLDPEGVRRCVDEAGIGFMMST 92 (233)
Q Consensus 13 ~~~di~Gtg~Dg~~t~nist~aA~vlA~~G~~V~~HG~~~~~~k~Gs~dvle~LGi~~~~~~~~a~~~L~~~gi~fl~~~ 92 (233)
+++|+|||||||.+||||||++|+++|++|+||+|||+|++++|+|++|+||+|||+++.++++++++|++.||+|+++|
T Consensus 2 ~~~D~~gTGGd~~~t~niSt~~a~vlAa~G~~V~kHG~r~~~~~~Gs~dvLe~LGv~~~~~~~~~~~~l~~~g~~fl~~~ 81 (252)
T PF00591_consen 2 PVVDICGTGGDGDKTFNISTAAAIVLAAAGVPVAKHGNRGVTSKSGSADVLEALGVPIDLSPEEAQAQLEETGIAFLFAP 81 (252)
T ss_dssp TEEEEEESSCSSSTBHHHHHHHHHHHHHTTSEEEEEEESGCTTSSSHHHHHHHSTB-TT--HHHHHHHHHHHSEEEEEHH
T ss_pred CceEEecCCCCCCCceehHHHHHHHHHccCCcEecccCCCccccccHHHHHHhcCCCcCCCHHHHHHHhhccCeEEecch
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccHHhhhhHHHHhhcCCCchhHHhhhccCCCCCCeEEEeecChhhHHHHHHHHHHcCCCeEEEEeeCCccccCCCCCeE
Q 026769 93 KYHPAMKFVRPVRKKLKVKTVFNILGPMLNPACVPFAVVGVYNENLVLKMANALQRFGLKRALVVHSEGLDEMSPLGPGL 172 (233)
Q Consensus 93 ~~~P~l~~l~~~R~~Lg~Rt~~Ntl~~LlNP~~~~~~v~Gv~h~~~~~~~a~~l~~lg~~~~lvv~GeG~dE~s~~~~t~ 172 (233)
.|||+|+++.++|++||+||+||+++||+||++++++++|||||+|.++|+++++.+|++++++|||||+||+++.++|.
T Consensus 82 ~~~p~~~~l~~~R~~lg~rT~~N~l~pL~nP~~~~~~v~Gv~~~~~~~~~~~~~~~lg~~~~~vv~G~G~dE~~~~~~t~ 161 (252)
T PF00591_consen 82 NFHPALKRLAPVRRELGIRTVFNTLGPLLNPANAKHQVIGVFHPEYAELMAEALRDLGYGRALVVKGEGSDEISPLGPTR 161 (252)
T ss_dssp HHSGGHHHHHHHHHHHTS--SHHHHGHHHHTT--SEEEEEHSCHHHHHHHHHHHCCETESEEEEEEETTBSSHHHSSHEE
T ss_pred hcCcchHHHHHHHHHcCCCCHHHhhhhhcCCcCCCcEEEEEeCHHHHHHHHHHHHhCCCceEEEEecCCcchhhhccCcE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEeCCeEEEEEeCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCchh-hhhhc
Q 026769 173 ILDVTQEKIERFSFDPLDYGIPRCTLESLQGGGPAYNAEVLRRVLSGERGAI-ADALV 229 (233)
Q Consensus 173 v~~~~~g~i~~~~i~P~~~gl~~~~~~~l~~~~~~~~a~~~~~vL~G~~~~~-~d~~~ 229 (233)
++.+++|++.+++|+|++||++..+.+++..+++++|+++++++|+|+.++. +|+|+
T Consensus 162 v~~~~~g~~~~~~l~p~d~gl~~~~~~~l~~~~~~e~~~~~~~~L~G~~~~~~~d~v~ 219 (252)
T PF00591_consen 162 VYELKNGEITEYELDPEDFGLKRAPLEELEGGDPEENARILRAVLAGEEDPAHRDAVL 219 (252)
T ss_dssp EEEHHTTEEEEEEEEEGCCTSSSEEGGGGBHSSHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred EEeecCCceeEEecCHhhcCCCCCChHHhcCCCHHHHHHHHHhhhcCCCCHHHHHHHH
Confidence 9999999999999999999999998999988999999999999999997665 88875
No 8
>PRK14607 bifunctional glutamine amidotransferase/anthranilate phosphoribosyltransferase; Provisional
Probab=100.00 E-value=9.7e-64 Score=477.68 Aligned_cols=229 Identities=42% Similarity=0.719 Sum_probs=219.8
Q ss_pred CccccccccCC-CCceeEeccCCCCCCCCcchHHHHHHHHcCCCcEEeeCCCCCCCcchHHHHHHHcCCCCCCCHHHHHH
Q 026769 1 MIKYATKVEGL-GDAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQGSRSSSSACGSADVLEALGVVIDLDPEGVRR 79 (233)
Q Consensus 1 ~~~~~~~~~~~-~~~~di~Gtg~Dg~~t~nist~aA~vlA~~G~~V~~HG~~~~~~k~Gs~dvle~LGi~~~~~~~~a~~ 79 (233)
|++++.+++.. +..+|+|||||||++|||+||++|+++|++|+||+|||||++|||+||+|+||+|||++..+++++++
T Consensus 254 ~~~~~~~~~~~~~~~~D~~gtggdg~~t~nist~~a~v~A~~G~~V~kHG~r~~ss~~Gsadvle~lGv~~~~~~~~~~~ 333 (534)
T PRK14607 254 MREKSRHIPAPSPRTVDTCGTGGDGFGTFNISTTSAFVVAAAGVPVAKHGNRAVSSKSGSADVLEALGVKLEMTPEEAAS 333 (534)
T ss_pred HHHhCCcCCCCCCCceEEccCCCCCCCccccHHHHHHHHHhCCCcEEEECCCCCCCCccHHHHHHHcCCCCCCCHHHHHH
Confidence 56777777653 35899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCeeeeecccccHHhhhhHHHHhhcCCCchhHHhhhccCCCCCCeEEEeecChhhHHHHHHHHHHcCCCeEEEEee
Q 026769 80 CVDEAGIGFMMSTKYHPAMKFVRPVRKKLKVKTVFNILGPMLNPACVPFAVVGVYNENLVLKMANALQRFGLKRALVVHS 159 (233)
Q Consensus 80 ~L~~~gi~fl~~~~~~P~l~~l~~~R~~Lg~Rt~~Ntl~~LlNP~~~~~~v~Gv~h~~~~~~~a~~l~~lg~~~~lvv~G 159 (233)
+|++.||+||++|.|||+|++++++|++||+||+||+++||+||++++++|+|||||+|.++|+++++.+|.++++||||
T Consensus 334 ~l~~~g~~fl~ap~~~p~l~~~~~~R~~Lg~rTifN~lgpL~NP~~~~~~v~Gv~~~~~~~~~a~~l~~lg~~~~~vv~G 413 (534)
T PRK14607 334 VLRETGFSFLFAPLFHPAMKHAAPARRELGIRTAFNLLGPLTNPARVKYQIVGVFDPSYAEPLAQALQRLGTERAMVVSG 413 (534)
T ss_pred HHHHhCcEEeeccccCHHHHHHHHHHHHhCCCcHHHhHHhccCCCCCCcEEEeeCCHHHHHHHHHHHHHcCCCEEEEEeC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred -CCccccCCCCCeEEEEEeCCeEEEEEeCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCC-chhhhhhc
Q 026769 160 -EGLDEMSPLGPGLILDVTQEKIERFSFDPLDYGIPRCTLESLQGGGPAYNAEVLRRVLSGER-GAIADALV 229 (233)
Q Consensus 160 -eG~dE~s~~~~t~v~~~~~g~i~~~~i~P~~~gl~~~~~~~l~~~~~~~~a~~~~~vL~G~~-~~~~d~~~ 229 (233)
||+||+||.++|+++++++|++.+++|+|++||++..++++++++|+++|+++++++|+|+. ++++|+++
T Consensus 414 ~~G~dE~s~~~~t~v~~~~~g~i~~~~i~p~~~Gl~~~~~~~~~~~~~~~na~~~~~vl~G~~~~~~~~~v~ 485 (534)
T PRK14607 414 IDGYDEISTCGPTQILELEDGEIVTYTFDPEELGLKRVDPEELKGGDPQENYRLAEDVLKGEPRRPQRDAVA 485 (534)
T ss_pred CCCCccccCCCceEEEEEcCCEEEEEEEcHHHCCCCCCCHHHcCCCCHHHHHHHHHHHHCCCCCChHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999994 88888764
No 9
>PRK00188 trpD anthranilate phosphoribosyltransferase; Provisional
Probab=100.00 E-value=2.5e-63 Score=451.54 Aligned_cols=229 Identities=55% Similarity=0.892 Sum_probs=217.4
Q ss_pred CccccccccCCCCceeEeccCCCCCCCCcchHHHHHHHHcCCCcEEeeCCCCCCCcchHHHHHHHcCCCCCCCHHHHHHH
Q 026769 1 MIKYATKVEGLGDAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQGSRSSSSACGSADVLEALGVVIDLDPEGVRRC 80 (233)
Q Consensus 1 ~~~~~~~~~~~~~~~di~Gtg~Dg~~t~nist~aA~vlA~~G~~V~~HG~~~~~~k~Gs~dvle~LGi~~~~~~~~a~~~ 80 (233)
|++++.+++..+.++|+|||||||++|||+||++|+++|++|+||+|||++++|+|+|++|+||+|||++..+++++++.
T Consensus 62 ~~~~~~~~~~~~~~iDi~gtggdg~~t~nis~~~a~vlA~~G~~V~kHG~~~~~s~~GsadvLe~lGi~~~~~~~~~~~~ 141 (339)
T PRK00188 62 MREHAVPVPDPDDAVDIVGTGGDGANTFNISTAAAFVAAAAGVKVAKHGNRSVSSKSGSADVLEALGVNLDLSPEQVARC 141 (339)
T ss_pred HHHhCCcCCCCCCCCcccCCCCCCCCccchHHHHHHHHHhCCCEEEEECCCCCCCCcCHHHHHHHcCCCCCCCHHHHHHH
Confidence 45666666544458999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCeeeeecccccHHhhhhHHHHhhcCCCchhHHhhhccCCCCCCeEEEeecChhhHHHHHHHHHHcCCCeEEEEee-
Q 026769 81 VDEAGIGFMMSTKYHPAMKFVRPVRKKLKVKTVFNILGPMLNPACVPFAVVGVYNENLVLKMANALQRFGLKRALVVHS- 159 (233)
Q Consensus 81 L~~~gi~fl~~~~~~P~l~~l~~~R~~Lg~Rt~~Ntl~~LlNP~~~~~~v~Gv~h~~~~~~~a~~l~~lg~~~~lvv~G- 159 (233)
|++.||+|+++|.|||+|++++++|++||+||+|||++||+||++++++|+|||||+|.++|+++++.+|.++++||||
T Consensus 142 l~~~g~~fl~a~~~~P~l~~l~~lR~~Lg~Rt~fN~l~~L~NP~~~~~~v~Gv~h~~~~~~~a~~l~~lg~~~~~vv~G~ 221 (339)
T PRK00188 142 LEEVGIGFLFAPLYHPAMKHVAPVRKELGIRTIFNLLGPLTNPARPKRQLIGVYSPDLLEPMAEVLKRLGSKRALVVHGS 221 (339)
T ss_pred HHHcCcEEeeCcccCHHHHHHHHHHHHhCCCCHHHHHHHhcCCCCCCCEEEeecCHHHHHHHHHHHHHhCCCeEEEEECC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccccCCCCCeEEEEEeCCeEEEEEeCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCC-Cchhhhhhc
Q 026769 160 EGLDEMSPLGPGLILDVTQEKIERFSFDPLDYGIPRCTLESLQGGGPAYNAEVLRRVLSGE-RGAIADALV 229 (233)
Q Consensus 160 eG~dE~s~~~~t~v~~~~~g~i~~~~i~P~~~gl~~~~~~~l~~~~~~~~a~~~~~vL~G~-~~~~~d~~~ 229 (233)
||+||++|+++|+++.+++|++.++.|+|++||++..+.+++..+++++|+++++++|+|+ .++++|.++
T Consensus 222 ~G~dE~~~~~~t~v~~~~~g~~~~~~i~p~~~Gl~~~~~~~~~~~~~~~~a~~~~~vl~G~~~~~~~~~v~ 292 (339)
T PRK00188 222 DGLDEISLTGPTTVAELKDGEIREYTLTPEDFGLPRAPLEDLRGGDPEENAAILRAVLQGKGPGAARDAVL 292 (339)
T ss_pred CCceeecCCCCEEEEEEcCCEEEEEEECHHHcCCCcCCHHhcCCCCHHHHHHHHHHHHCCCCCCchHHHHH
Confidence 9999999999999999999999999999999999998888888889999999999999996 688888764
No 10
>PRK09071 hypothetical protein; Validated
Probab=100.00 E-value=2.4e-59 Score=422.12 Aligned_cols=218 Identities=18% Similarity=0.208 Sum_probs=200.8
Q ss_pred CccccccccCCCCceeE-eccCCCCCCCCcchHHHHHHHHcCCCcEEeeCCCCCCCcch-HHHHHHHcCCCCCCCHHHHH
Q 026769 1 MIKYATKVEGLGDAVDI-VGTGGDGANTVNISTGASILAAACGAKVAKQGSRSSSSACG-SADVLEALGVVIDLDPEGVR 78 (233)
Q Consensus 1 ~~~~~~~~~~~~~~~di-~Gtg~Dg~~t~nist~aA~vlA~~G~~V~~HG~~~~~~k~G-s~dvle~LGi~~~~~~~~a~ 78 (233)
|++++.+++. +..+|+ ||||+|+..++| |++|+++|++|+||+||||+++|||+| |+|+||+|||+++.++++++
T Consensus 67 ~r~~~~~~~~-~~~iD~~~gtG~d~~~~~~--~~~a~vlA~~G~~V~kHGnr~~ssk~g~saDvLeaLGv~~~~~~~~~~ 143 (323)
T PRK09071 67 IRERLQAPPL-AVDLDWPSYAGKRRHLPWY--LLAAKLLAQNGYRVLLHGGGGHTAGRLYTEQLLEALGIPIARSWQEAE 143 (323)
T ss_pred HHHhcccCCC-CCceecCCcCCCCCCcccH--HHHHHHHHHCCCeEEEECCCCCCCCcccHHHHHHHCCCCCCCCHHHHH
Confidence 5677777753 234998 999999777776 799999999999999999999999996 99999999999999999999
Q ss_pred HHHHHcCeeeeecccccHHhhhhHHHHhhcCCCchhHHhhhccCCCCCCeEEEeecChhhHHHHHHHHHHcCCCeEEEEe
Q 026769 79 RCVDEAGIGFMMSTKYHPAMKFVRPVRKKLKVKTVFNILGPMLNPACVPFAVVGVYNENLVLKMANALQRFGLKRALVVH 158 (233)
Q Consensus 79 ~~L~~~gi~fl~~~~~~P~l~~l~~~R~~Lg~Rt~~Ntl~~LlNP~~~~~~v~Gv~h~~~~~~~a~~l~~lg~~~~lvv~ 158 (233)
++|++.||+|+++|.|||+|+++.++|++||+||+||+++||+||++++++|+|||||+|.++|+++++.+|.++++|||
T Consensus 144 ~~l~~~g~~fl~ap~~hPa~~~~~~~R~~lg~RT~fN~lgpL~NPa~~~~~v~Gv~~~~~~~~~a~~l~~lg~~~alvv~ 223 (323)
T PRK09071 144 QALEEHNIAYLPLEDFAPQLQRMIDLRNTLGLRSPINTLARLLNPLNAKASLQGIFHPGYQQLHREAARLLGDQNALVFK 223 (323)
T ss_pred HHHHhcCeEEeehHHhChHHHHHHHHHHHhCCCCHHHHHHHHcCcCCCCceEEeeEChhHHHHHHHHHHHcCCCeEEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred e-CCccccCCCCCeEEEEEeCCeEEEEEeCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCC-ch-hhhhhc
Q 026769 159 S-EGLDEMSPLGPGLILDVTQEKIERFSFDPLDYGIPRCTLESLQGGGPAYNAEVLRRVLSGER-GA-IADALV 229 (233)
Q Consensus 159 G-eG~dE~s~~~~t~v~~~~~g~i~~~~i~P~~~gl~~~~~~~l~~~~~~~~a~~~~~vL~G~~-~~-~~d~~~ 229 (233)
| ||+||+||+++|++|++++|++.+++|+| ||++..++ ++++|++++++||+|+. ++ .+|+|+
T Consensus 224 G~~G~dE~s~~~~t~v~~~~~g~i~~~~~~~--~g~~~~~~------~~~~na~~~~~vl~G~~~~~~~~d~v~ 289 (323)
T PRK09071 224 GEGGESERNPDVSTTLYGSRNGEAWDEEWPA--LSEERHVK------PEELDPEQLLAVWRGEEEDEYGENAVI 289 (323)
T ss_pred CCCCceeecCCCceEEEEEcCCeEEEEEecc--cccccCCC------CcccCHHHHHHHhCCCCCchHHHHHHH
Confidence 9 99999999999999999999999999954 88876543 78999999999999984 44 467765
No 11
>KOG1438 consensus Anthranilate phosphoribosyltransferase [Amino acid transport and metabolism]
Probab=100.00 E-value=2.3e-59 Score=404.76 Aligned_cols=217 Identities=64% Similarity=1.050 Sum_probs=206.4
Q ss_pred CCceeEeccCCCCCCCCcchHHHHHHHHcCCCcEEeeCCCCCCCcchHHHHHHHcCCCC-CCCHHHHHHHHHHcCeeeee
Q 026769 12 GDAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQGSRSSSSACGSADVLEALGVVI-DLDPEGVRRCVDEAGIGFMM 90 (233)
Q Consensus 12 ~~~~di~Gtg~Dg~~t~nist~aA~vlA~~G~~V~~HG~~~~~~k~Gs~dvle~LGi~~-~~~~~~a~~~L~~~gi~fl~ 90 (233)
++++|||||||||.||||+||.+||++|.+|.+|+||||++.||.+|++|+|++|||++ +.+++.+.+++++.+|.||.
T Consensus 102 ~~~vDIVGTGGDG~NTfNvST~saIvAag~GlkvcKhGnkaStSasGsaDll~~lGCd~l~v~p~~i~~~~e~~~f~Fl~ 181 (373)
T KOG1438|consen 102 EDAVDIVGTGGDGANTFNVSTGSAIVAAGCGLKVCKHGNKASTSASGSADLLEALGCDVLDVGPEGIKRCVEEGGFGFLM 181 (373)
T ss_pred CceeEEeccCCCCcceeeecchHHHHHhcccchhhhcCCccccccCccHHHHHhcCceeeccCCcccccccccCceeEEe
Confidence 57899999999999999999999999999999999999999999999999999999876 68999999999999999999
Q ss_pred cccccHHhhhhHHHHhhcCCCchhHHhhhccCCCCCCeEEEeecChhhHHHHHHHHHHcCCCeEEEEee-CCccccCCCC
Q 026769 91 STKYHPAMKFVRPVRKKLKVKTVFNILGPMLNPACVPFAVVGVYNENLVLKMANALQRFGLKRALVVHS-EGLDEMSPLG 169 (233)
Q Consensus 91 ~~~~~P~l~~l~~~R~~Lg~Rt~~Ntl~~LlNP~~~~~~v~Gv~h~~~~~~~a~~l~~lg~~~~lvv~G-eG~dE~s~~~ 169 (233)
+|-|||+|+.+.++||+||++|+||++||||||++..++|+||||+++.++|+++++++|..+..+|+| +|.||+||.+
T Consensus 182 aPm~Hp~mk~V~piRK~LgipTvFNilGPlLnP~~v~~rivGVy~k~L~~~~AKal~~~g~gs~~~V~g~~GLDE~SP~G 261 (373)
T KOG1438|consen 182 APMYHPAMKIVGPIRKKLGIPTVFNILGPLLNPARVSYRIVGVYHKDLVVKMAKALQRFGMGSRALVVGSCGLDEMSPLG 261 (373)
T ss_pred chhhcccccchhHHHHhcCCccHHHhcccccCcchhhhheeeeeHHHHHHHHHHHHHHhCCCceEEEEeccCccccCCCC
Confidence 999999999999999999999999999999999999999999999999999999999999998888888 9999999999
Q ss_pred CeEEEEEeCC--eEEEEEeCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCc---hhhhhh
Q 026769 170 PGLILDVTQE--KIERFSFDPLDYGIPRCTLESLQGGGPAYNAEVLRRVLSGERG---AIADAL 228 (233)
Q Consensus 170 ~t~v~~~~~g--~i~~~~i~P~~~gl~~~~~~~l~~~~~~~~a~~~~~vL~G~~~---~~~d~~ 228 (233)
+|.+|.++++ ++++|+++|.+|||++++++++.++.|++||.+.+++|.|+-+ |.+|-+
T Consensus 262 ~t~vw~v~~se~k~e~f~~~P~~Fgl~~h~Ls~~asggP~~NAilleevLSg~~hagdPI~Dy~ 325 (373)
T KOG1438|consen 262 GTLVWDVTPSEEKIEEFSFDPLDFGLPRHTLSDLASGGPDYNAILLEEVLSGESHAGDPIADYL 325 (373)
T ss_pred CceEEEecCCceeeeeeecCHhhcCCCcCchhhhccCCCCccHHHHHHHhcCcccCCChHHHHH
Confidence 9999999985 5778999999999999999999999999999999999999854 455543
No 12
>PRK06078 pyrimidine-nucleoside phosphorylase; Reviewed
Probab=100.00 E-value=4.1e-35 Score=271.98 Aligned_cols=191 Identities=23% Similarity=0.311 Sum_probs=170.9
Q ss_pred CccccccccCC--CC-ceeEeccCCCCCCCCcchHHHHHHHHcCCCcEEeeCCCCCCCcchHHHHHHHc-CCCCCCCHHH
Q 026769 1 MIKYATKVEGL--GD-AVDIVGTGGDGANTVNISTGASILAAACGAKVAKQGSRSSSSACGSADVLEAL-GVVIDLDPEG 76 (233)
Q Consensus 1 ~~~~~~~~~~~--~~-~~di~Gtg~Dg~~t~nist~aA~vlA~~G~~V~~HG~~~~~~k~Gs~dvle~L-Gi~~~~~~~~ 76 (233)
|++.+.+++.. .+ ++|+|||||||.+|||+ +|+++|++|++|.|||||++++++||+|+||+| |+++.+++++
T Consensus 62 M~~sg~~~~~~~~~~~~vD~~gTGGdG~kt~ni---~a~ivAA~Gv~VaKhgnR~lss~~GTaD~LE~lpG~~~~ls~e~ 138 (434)
T PRK06078 62 MVNSGDTIDLSAIEGIKVDKHSTGGVGDTTTLV---LAPLVAAFGVPVAKMSGRGLGHTGGTIDKLESIKGFHVEISQED 138 (434)
T ss_pred HHHhCCcccCcccCCCeeEecCCCCCCCCchHH---HHHHHHcCCCCeeeeCCCCcCCCcchHHHHHhCCCCCCCCCHHH
Confidence 56777777653 23 89999999999999994 899999999999999999999999999999999 9999999999
Q ss_pred HHHHHHHcCeeeee-cccccHHhhhhHHHHhhcCCCchhHHhhhccCC--------CCCCeEEEeec--------ChhhH
Q 026769 77 VRRCVDEAGIGFMM-STKYHPAMKFVRPVRKKLKVKTVFNILGPMLNP--------ACVPFAVVGVY--------NENLV 139 (233)
Q Consensus 77 a~~~L~~~gi~fl~-~~~~~P~l~~l~~~R~~Lg~Rt~~Ntl~~LlNP--------~~~~~~v~Gv~--------h~~~~ 139 (233)
+.++|++.||+|++ +|.|||+++.+.++|++++. ||.+ ||+|| +++.++|+||+ +++..
T Consensus 139 ~~~~l~~~G~~fl~~a~~~~PAdk~v~~lR~v~~t---~n~l-PLi~~SImSKKlAag~~~~vldV~~G~gAfm~~~~~a 214 (434)
T PRK06078 139 FIKLVNENKVAVIGQSGNLTPADKKLYALRDVTAT---VNSI-PLIASSIMSKKIAAGADAIVLDVKTGAGAFMKTVEDA 214 (434)
T ss_pred HHHHHHHhCcEEEccCCCcChhhhhhHHHhccccc---cChH-HhhhhHhhhhhhhcCCCeEEEeeecCCCCCCCCHHHH
Confidence 99999999999999 59999999999999999993 9999 99999 89999999999 99999
Q ss_pred HHHHHHHHHcCCCeEEEEeeCCccccCCCCCeEEEEEeCCeEEEEEeCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCC
Q 026769 140 LKMANALQRFGLKRALVVHSEGLDEMSPLGPGLILDVTQEKIERFSFDPLDYGIPRCTLESLQGGGPAYNAEVLRRVLSG 219 (233)
Q Consensus 140 ~~~a~~l~~lg~~~~lvv~GeG~dE~s~~~~t~v~~~~~g~i~~~~i~P~~~gl~~~~~~~l~~~~~~~~a~~~~~vL~G 219 (233)
+.+++++..+|.+ .+.+.++.++++ |+++|+ ..+++.++++. .++|+|
T Consensus 215 ~~lA~~l~~lG~~---------------~g~~~~a~lt~~--------~~plG~--------~iGna~Ev~Ea-~~vL~G 262 (434)
T PRK06078 215 EELAHAMVRIGNN---------------VGRNTMAVISDM--------SQPLGR--------AIGNALEVLEA-IDTLQG 262 (434)
T ss_pred HHHHHHHHHHHHh---------------cCCeEEEEECCC--------Cccccc--------cCCCHHHHHHH-HHHHCC
Confidence 9999999999975 446777777774 788886 25788888888 999999
Q ss_pred C-Cchhhhhhcc
Q 026769 220 E-RGAIADALVS 230 (233)
Q Consensus 220 ~-~~~~~d~~~~ 230 (233)
+ +++++|.++.
T Consensus 263 ~~~~~~~d~v~~ 274 (434)
T PRK06078 263 KGPKDLTELVLT 274 (434)
T ss_pred CCcccHHHHHHH
Confidence 8 4578887764
No 13
>TIGR02644 Y_phosphoryl pyrimidine-nucleoside phosphorylase. In general, members of this protein family are designated pyrimidine-nucleoside phosphorylase, enzyme family EC 2.4.2.2, as in Bacillus subtilis, and more narrowly as the enzyme family EC 2.4.2.4, thymidine phosphorylase (alternate name: pyrimidine phosphorylase), as in Escherichia coli. The set of proteins encompassed by this model is designated subfamily rather than equivalog for this reason; the protein name from this model should be used when TIGR02643 does not score above trusted cutoff.
Probab=99.96 E-value=7.5e-30 Score=235.37 Aligned_cols=158 Identities=25% Similarity=0.307 Sum_probs=141.2
Q ss_pred CccccccccCC---CCceeEeccCCCCCCCCcchHHHHHHHHcCCCcEEeeCCCCCCCcchHHHHHHHcC-CCCCCCHHH
Q 026769 1 MIKYATKVEGL---GDAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQGSRSSSSACGSADVLEALG-VVIDLDPEG 76 (233)
Q Consensus 1 ~~~~~~~~~~~---~~~~di~Gtg~Dg~~t~nist~aA~vlA~~G~~V~~HG~~~~~~k~Gs~dvle~LG-i~~~~~~~~ 76 (233)
|++.+.+++.. ..++|+|||||||. |+||++|+++|++|+||+|||||++++++|++|+||+|| +++.+++++
T Consensus 60 m~~~~~~l~~~~~~~~~vD~~gTGGdG~---~iSt~~a~ivAa~Gv~VaKhgnR~lss~~GTaD~LE~lgG~~v~ls~e~ 136 (405)
T TIGR02644 60 MIDSGEVLDLSSLPGPKVDKHSTGGVGD---KVSLVLGPIVAACGVKVAKMSGRGLGHTGGTIDKLESIPGFRTELSEAE 136 (405)
T ss_pred HHHhCCcCCCcccCCCeeEEeCCCCCCC---CchHHHHHHHHhCCCCEEeeCCCCCCCcchHHHHHHhcCCCCCCCCHHH
Confidence 56677777543 24899999999998 599999999999999999999999999999999999999 999999999
Q ss_pred HHHHHHHcCeeeeecc-cccHHhhhhHHHHhhcCCCchhHHhhhccCCCC--------CCeEEEee--------cChhhH
Q 026769 77 VRRCVDEAGIGFMMST-KYHPAMKFVRPVRKKLKVKTVFNILGPMLNPAC--------VPFAVVGV--------YNENLV 139 (233)
Q Consensus 77 a~~~L~~~gi~fl~~~-~~~P~l~~l~~~R~~Lg~Rt~~Ntl~~LlNP~~--------~~~~v~Gv--------~h~~~~ 139 (233)
+++++++.||+|++++ .++|+++.|.++|++++ |++|. ||+||.- +.++|++| ++.+..
T Consensus 137 ~~~~l~~~G~~fl~~~~~l~PAdk~l~~lRd~~~--Tv~si--pLi~aSimSKK~A~G~~~~vlDVk~G~gAfm~~~e~a 212 (405)
T TIGR02644 137 FIEIVNKVGLAIIGQTKDLAPADKKLYALRDVTG--TVDSI--PLIASSIMSKKLAAGADAIVLDVKVGSGAFMKTLEDA 212 (405)
T ss_pred HHHHHHHcCeEEecCccccCcchhHHHHHhhccc--ccCcH--HHHHHHHHHHHHhcCCCeEEEeecccCCCCcCCHHHH
Confidence 9999999999999999 99999999999999999 99998 9999966 78999999 999999
Q ss_pred HHHHHHHHHcCCCeEE--EEeeCCcccc
Q 026769 140 LKMANALQRFGLKRAL--VVHSEGLDEM 165 (233)
Q Consensus 140 ~~~a~~l~~lg~~~~l--vv~GeG~dE~ 165 (233)
..+++.+..+|.+..+ ++...++||+
T Consensus 213 ~~LA~~~~~~g~~~g~~~~a~~t~md~p 240 (405)
T TIGR02644 213 KELAKLMVEIGKGAGRKTSALLTDMNQP 240 (405)
T ss_pred HHHHHHHHHHHHHcCCeEEEEecCCCcc
Confidence 9999999988766444 3333667766
No 14
>PRK04350 thymidine phosphorylase; Provisional
Probab=99.96 E-value=9.1e-29 Score=232.01 Aligned_cols=191 Identities=23% Similarity=0.344 Sum_probs=158.5
Q ss_pred CccccccccCC-CCceeEeccCCCCCCCCcchHHHHHHHHcCCCcEEeeCCCCCCCcchHHHHHHHcCCCCCCCHHHHHH
Q 026769 1 MIKYATKVEGL-GDAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQGSRSSSSACGSADVLEALGVVIDLDPEGVRR 79 (233)
Q Consensus 1 ~~~~~~~~~~~-~~~~di~Gtg~Dg~~t~nist~aA~vlA~~G~~V~~HG~~~~~~k~Gs~dvle~LGi~~~~~~~~a~~ 79 (233)
|++.+.+++.. ..++|+||||||+.+++|+ .++.++|++|++|.|||||+++|++||+|+||+|| +++.+++++.+
T Consensus 140 M~~~g~~l~~~~~~~vDkhgTGGd~g~t~S~--~~apivAA~Gv~VaKhgnRaiss~sGTaD~LEaLg-~v~ls~e~~~~ 216 (490)
T PRK04350 140 MVETGERLDWDRPPVVDKHSIGGVPGNRTTL--IVVPIVAAAGLTIPKTSSRAITSPAGTADTMEVLA-PVDLSVEEIKR 216 (490)
T ss_pred HHHhCCcccCCCCCeEEecCCCCCCCCCEeH--HHHHHHHhCCCceeeecCCCCCCCCchHHHHHHhh-cCCCCHHHHHH
Confidence 56777777654 3589999999999998754 47777799999999999999999999999999999 99999999999
Q ss_pred HHHHcCeeeee--cccccHHhhhhHHHHhhcCCCchhHHhhhccC--------------CCCCCeEEEeecChhhHHHHH
Q 026769 80 CVDEAGIGFMM--STKYHPAMKFVRPVRKKLKVKTVFNILGPMLN--------------PACVPFAVVGVYNENLVLKMA 143 (233)
Q Consensus 80 ~L~~~gi~fl~--~~~~~P~l~~l~~~R~~Lg~Rt~~Ntl~~LlN--------------P~~~~~~v~Gv~h~~~~~~~a 143 (233)
++++.|+||++ ++.|||+++++.++|++++++|++|++++++| |+++... +++.+..+.++
T Consensus 217 ~l~~~G~~flfG~a~~l~PAdk~l~~vR~~l~vds~~li~aSImSKKlA~G~~~lvlDVp~G~ga~---v~~~~~A~~LA 293 (490)
T PRK04350 217 VVEKVGGCLVWGGAVNLSPADDILIRVERPLSIDPRGQLVASILSKKIAAGSTHVVIDIPVGPTAK---VRSVEEARRLA 293 (490)
T ss_pred HHHHcCEEEEECCccccCHHHHHHHHHhhhcCCCcHHHHHHHHhhhHhhcCCCceEEecccCCCCc---CCCHHHHHHHH
Confidence 99999999999 99999999999999999999999999999999 9998777 89999999999
Q ss_pred HHHHHcCCCeEEEEeeCCccccCCCCCeEEEEEeCCeEEEEEeCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCC---
Q 026769 144 NALQRFGLKRALVVHSEGLDEMSPLGPGLILDVTQEKIERFSFDPLDYGIPRCTLESLQGGGPAYNAEVLRRVLSGE--- 220 (233)
Q Consensus 144 ~~l~~lg~~~~lvv~GeG~dE~s~~~~t~v~~~~~g~i~~~~i~P~~~gl~~~~~~~l~~~~~~~~a~~~~~vL~G~--- 220 (233)
+.+..+|.+..+.+ .+.++++. .|-.+| -.+..+++...++|+|+
T Consensus 294 ~~~~~vg~~~g~~v---------------~a~lTd~~------qPlG~~-----------iGnalEv~e~l~vL~g~~~g 341 (490)
T PRK04350 294 RLFEEVGDRLGLRV---------------ECAITDGS------QPIGRG-----------IGPALEARDVLAVLENDPDA 341 (490)
T ss_pred HHHHHHHHhcCCeE---------------EEEECCCC------eehhcc-----------CCchHHHHHHHHHhCCCCCC
Confidence 99999987654443 12223332 121222 23677888999999994
Q ss_pred Cchhhhhhc
Q 026769 221 RGAIADALV 229 (233)
Q Consensus 221 ~~~~~d~~~ 229 (233)
+..++|.++
T Consensus 342 p~dl~e~~l 350 (490)
T PRK04350 342 PNDLREKSL 350 (490)
T ss_pred CHhHHHHHH
Confidence 344555544
No 15
>PRK05820 deoA thymidine phosphorylase; Reviewed
Probab=99.88 E-value=6.6e-23 Score=190.93 Aligned_cols=149 Identities=25% Similarity=0.303 Sum_probs=118.7
Q ss_pred CccccccccCC-----CCceeEeccCCCCCCCCcchHHHHHHHHcCCCcEEeeCCCCCCCcchHHHHHHHc-CCCCCCCH
Q 026769 1 MIKYATKVEGL-----GDAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQGSRSSSSACGSADVLEAL-GVVIDLDP 74 (233)
Q Consensus 1 ~~~~~~~~~~~-----~~~~di~Gtg~Dg~~t~nist~aA~vlA~~G~~V~~HG~~~~~~k~Gs~dvle~L-Gi~~~~~~ 74 (233)
|++++.+++.. ...+|+|||||||. |+||.+|+++|++|++|.|||||+.++++|++|+||+| |++++.++
T Consensus 63 m~~sg~~i~~~~~d~~~~~vDkhgTGGdG~---niS~~~a~ivAa~Gv~VaKhg~R~lss~~GTaD~LE~LpG~~v~ls~ 139 (440)
T PRK05820 63 MRDSGEVLDWSSLNLNGPIVDKHSTGGVGD---KISLMLAPMVAACGGYVPMISGRGLGHTGGTLDKLEAIPGYRAFPSN 139 (440)
T ss_pred HHHhCCcCCCccccCCCCeEEEcCCCCCCc---cHHHHHHHHHHhCCCCEEeeCCCCCCCcccHHHHHHhCCCCCCCCCH
Confidence 45566666432 34799999999998 99999999999999999999999999999999999999 99999999
Q ss_pred HHHHHHHHHcCeeeeecc-cccHHhhhhHHHHhhc-CCCchhHHhhhccCC---CCCCeEEEeec------C------hh
Q 026769 75 EGVRRCVDEAGIGFMMST-KYHPAMKFVRPVRKKL-KVKTVFNILGPMLNP---ACVPFAVVGVY------N------EN 137 (233)
Q Consensus 75 ~~a~~~L~~~gi~fl~~~-~~~P~l~~l~~~R~~L-g~Rt~~Ntl~~LlNP---~~~~~~v~Gv~------h------~~ 137 (233)
+++.+++++.|++|++++ .|||+++.+.++|++. .+.++==++..++.= .+..+.|+=|- = +.
T Consensus 140 e~~~~~l~~~G~~~~~~~~~l~PAdk~l~~lRdvt~tvds~pli~aSImSKK~A~G~~~lvlDVk~G~gAfmkt~~~A~~ 219 (440)
T PRK05820 140 DRFREILKDVGVAIIGQTSDLAPADKRLYALRDVTATVESIPLITASILSKKLAEGLDALVLDVKVGSGAFMKTYEEARE 219 (440)
T ss_pred HHHHHHHHHcCeEEEcCchhcChHHHHHHHHhcccCCCChHHHHHHHHHHHHHHcCCCeEEEEcCCCCCCCCCCHHHHHH
Confidence 999999999999999999 9999999999999877 455544444444333 33444444332 1 34
Q ss_pred hHHHHHHHHHHcCCC
Q 026769 138 LVLKMANALQRFGLK 152 (233)
Q Consensus 138 ~~~~~a~~l~~lg~~ 152 (233)
+.+.|.++.+.+|.+
T Consensus 220 La~~mv~ig~~~g~~ 234 (440)
T PRK05820 220 LARSMVEVANGAGVR 234 (440)
T ss_pred HHHHHHHHHHHcCCe
Confidence 556666677777775
No 16
>TIGR02645 ARCH_P_rylase putative thymidine phosphorylase. Members of this family are closely related to characterized examples of thymidine phosphorylase (EC 2.4.2.4) and pyrimidine nucleoside phosphorylase (RC 2.4.2.2). Most examples are found in the archaea, but other examples in Legionella pneumophila str. Paris and Rhodopseudomonas palustris CGA009.
Probab=99.88 E-value=1.9e-22 Score=189.41 Aligned_cols=149 Identities=23% Similarity=0.326 Sum_probs=124.3
Q ss_pred CccccccccCC-CCceeEeccCCCCCCCCcchHHHHHHHHcCCCcEEeeCCCCCCCcchHHHHHHHcCCCCCCCHHHHHH
Q 026769 1 MIKYATKVEGL-GDAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQGSRSSSSACGSADVLEALGVVIDLDPEGVRR 79 (233)
Q Consensus 1 ~~~~~~~~~~~-~~~~di~Gtg~Dg~~t~nist~aA~vlA~~G~~V~~HG~~~~~~k~Gs~dvle~LGi~~~~~~~~a~~ 79 (233)
|++.+.+++.. ..++|+||||||+.+++|++ ++.++|++|++|.|||||+.+|++|++|+||+|| ++++++++..+
T Consensus 145 M~~sg~~l~~~~~~~vDkhgTGGd~gnk~ni~--~apIvAA~Gv~VaKhsnRaits~sGTAD~LE~Lg-~v~ls~e~~~~ 221 (493)
T TIGR02645 145 MADTGEMLEWDREPIMDKHSIGGVPGNKTSLI--VVPIVAAAGLLIPKTSSRAITSAAGTADTMEVLT-RVALSAEEIKR 221 (493)
T ss_pred HHHhCCCccCCCCCeEEEeCCCCCCCCCEeHH--HHHHHHhCCCCeeeeCCCCcCCCccHHHHHHHhc-CCCCCHHHHHH
Confidence 56667777654 35899999999999999985 5566699999999999999999999999999999 99999999999
Q ss_pred HHHHcCeeeee--cccccHHhhhhHHHHhhcCCCchhHHhhhccCC---CCCCeEEEeec------------ChhhHHHH
Q 026769 80 CVDEAGIGFMM--STKYHPAMKFVRPVRKKLKVKTVFNILGPMLNP---ACVPFAVVGVY------------NENLVLKM 142 (233)
Q Consensus 80 ~L~~~gi~fl~--~~~~~P~l~~l~~~R~~Lg~Rt~~Ntl~~LlNP---~~~~~~v~Gv~------------h~~~~~~~ 142 (233)
++++.|+||++ ++.|||+++.+.++|+.|++.|+--++.-.+.= .++.+.|+=|- -..+...|
T Consensus 222 ~ve~~G~~fl~G~a~~l~PAdk~i~~vR~~l~vds~~li~aSImSKKlA~G~~~lvlDvk~G~gAf~~~~~~A~~La~~~ 301 (493)
T TIGR02645 222 IVEKVGGCLVWGGALNLAPADDVLIRVERPLSIDPRAQMLASIMSKKIAAGSTHVLIDIPVGPGAKVRSLQEAERLARLF 301 (493)
T ss_pred HHHHCCEEEEECCCcccCHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHhcCCCeEEEeccccCCCcCCCHHHHHHHHHHH
Confidence 99999999999 999999999999999999999988777776653 34456565332 13455666
Q ss_pred HHHHHHcCCC
Q 026769 143 ANALQRFGLK 152 (233)
Q Consensus 143 a~~l~~lg~~ 152 (233)
.++.+.+|.+
T Consensus 302 ~~vg~~~G~~ 311 (493)
T TIGR02645 302 IELGDRLGVR 311 (493)
T ss_pred HHHHHHcCCe
Confidence 6667777774
No 17
>TIGR02643 T_phosphoryl thymidine phosphorylase. Thymidine phosphorylase (alternate name: pyrimidine phosphorylase), EC 2.4.2.4, is the designation for the enzyme of E. coli and other Proteobacteria involved in (deoxy)nucleotide degradation. It often occurs in an operon with a deoxyribose-phosphate aldolase, phosphopentomutase and a purine nucleoside phosphorylase. In many other lineages, the corresponding enzyme is designated pyrimidine-nucleoside phosphorylase (EC 2.4.2.2); the naming convention imposed by this model represents standard literature practice.
Probab=99.86 E-value=2.2e-22 Score=186.80 Aligned_cols=149 Identities=28% Similarity=0.357 Sum_probs=119.0
Q ss_pred CccccccccCC-----CCceeEeccCCCCCCCCcchHHHHHHHHcCCCcEEeeCCCCCCCcchHHHHHHHc-CCCCCCCH
Q 026769 1 MIKYATKVEGL-----GDAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQGSRSSSSACGSADVLEAL-GVVIDLDP 74 (233)
Q Consensus 1 ~~~~~~~~~~~-----~~~~di~Gtg~Dg~~t~nist~aA~vlA~~G~~V~~HG~~~~~~k~Gs~dvle~L-Gi~~~~~~ 74 (233)
|++++.+++.. ..++|+|||||||. |+||++|+++|++|++|.|||||++++++||+|+||+| |+++..++
T Consensus 62 M~~sg~~i~~~~~~~~~~~vDkhgTGGdG~---niSt~~apivAA~Gv~VaKhgnR~iss~~GTaD~LEalpG~~v~ls~ 138 (437)
T TIGR02643 62 MRDSGDVLDWRSLDLNGPVVDKHSTGGVGD---VVSLMLGPIVAACGGYVPMISGRGLGHTGGTLDKLEAIPGYDIFPDP 138 (437)
T ss_pred HHHhCCcccCcccccCCCeeEecCCCCCCc---chhHHHHHHHHhCCCCeeeecCCCcCCCCchHHHHHhCCCCCCCCCH
Confidence 45666666543 35899999999988 89999999999999999999999999999999999999 99999999
Q ss_pred HHHHHHHHHcCeeeee-cccccHHhhhhHHHHh-hcCCCchhHHhhhccCC---CCCCeEEEee------cC------hh
Q 026769 75 EGVRRCVDEAGIGFMM-STKYHPAMKFVRPVRK-KLKVKTVFNILGPMLNP---ACVPFAVVGV------YN------EN 137 (233)
Q Consensus 75 ~~a~~~L~~~gi~fl~-~~~~~P~l~~l~~~R~-~Lg~Rt~~Ntl~~LlNP---~~~~~~v~Gv------~h------~~ 137 (233)
+++.+++++.||+|+. ++.++|+.+.+.++|. ...+.++-=+..-++.= .++.+.|+=| |= +.
T Consensus 139 e~~~~~l~~~g~~f~gqa~~l~PADk~ly~lRDvt~tVds~pLi~aSImSKKlA~g~d~ivlDVk~G~gAfmk~~~~A~~ 218 (437)
T TIGR02643 139 ALFRRVVKDVGVAIIGQTADLAPADKRFYATRDVTATVESIPLITASILSKKLAAGLDALVMDVKVGNGAFMPTYEESEE 218 (437)
T ss_pred HHHHHHHHHcCceEEccCCCcCcchhceeeeeeecCCCCcHHHHHHHHHHHHHHcCCCeEEEEcCcCCCCcCCCHHHHHH
Confidence 9999999999999998 8999999999999994 45566554444443332 2344555433 32 34
Q ss_pred hHHHHHHHHHHcCCC
Q 026769 138 LVLKMANALQRFGLK 152 (233)
Q Consensus 138 ~~~~~a~~l~~lg~~ 152 (233)
+.+.|.++.+.+|.+
T Consensus 219 LA~~mv~ig~~~g~~ 233 (437)
T TIGR02643 219 LARSLVDVANGAGVR 233 (437)
T ss_pred HHHHHHHHHHHcCCe
Confidence 556666667777775
No 18
>TIGR03327 AMP_phos AMP phosphorylase. This enzyme family is found, so far, strictly in the Archaea, and only in those with a type III Rubisco enzyme. Most of the members previously were annotated as thymidine phosphorylase, or DeoA. The AMP metabolized by this enzyme may be produced by ADP-dependent sugar kinases.
Probab=99.84 E-value=6.9e-21 Score=179.04 Aligned_cols=149 Identities=21% Similarity=0.333 Sum_probs=121.3
Q ss_pred CccccccccCC-CCceeEeccCCCCCCCCcchHHHHHHHHcCCCcEEeeCCCCCCCcchHHHHHHHcCCCCCCCHHHHHH
Q 026769 1 MIKYATKVEGL-GDAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQGSRSSSSACGSADVLEALGVVIDLDPEGVRR 79 (233)
Q Consensus 1 ~~~~~~~~~~~-~~~~di~Gtg~Dg~~t~nist~aA~vlA~~G~~V~~HG~~~~~~k~Gs~dvle~LGi~~~~~~~~a~~ 79 (233)
|++.+.+++.. ..++|+||||||+.++||++ ++.++|++|++|.|||||+.+|++||+|+||+|+ ++++++++..+
T Consensus 146 M~~sg~~l~~~~~~vvDkhgTGGd~gnk~nl~--~apIVAA~Gv~VaKhsnRaits~sGTaD~LEsL~-~v~ls~e~~~~ 222 (500)
T TIGR03327 146 MAETGDMLSFDRHPIMDKHSIGGVPGNKISLL--VVPIVAAAGLTIPKTSSRAITSAAGTADVMEVLA-PVEFSADEIKR 222 (500)
T ss_pred HHHhCCcccCCCCCeEEEeCCCCCCCCCEEHH--HHHHHHhCCCCeeeeCCCCcCCCccHHHHHHHhh-CCCCCHHHHHH
Confidence 45666667654 35899999999999999996 4555688999999999999999999999999995 99999999999
Q ss_pred HHHHcCeeeee--cccccHHhhhhHHHHhhcCCCchhHHhhhccCC---CCCCeEEEee------c------ChhhHHHH
Q 026769 80 CVDEAGIGFMM--STKYHPAMKFVRPVRKKLKVKTVFNILGPMLNP---ACVPFAVVGV------Y------NENLVLKM 142 (233)
Q Consensus 80 ~L~~~gi~fl~--~~~~~P~l~~l~~~R~~Lg~Rt~~Ntl~~LlNP---~~~~~~v~Gv------~------h~~~~~~~ 142 (233)
.+++.|+||++ ++.|||+++.+..+|+.+.+-++=-++.-.+.= .++.+.|+=| | -..+.+.|
T Consensus 223 ~v~~~G~~fl~Gqa~~l~PAdk~l~alrdt~tvds~~li~aSImSKKlA~G~d~lvlDVk~G~gAfm~~~~~A~~LA~~m 302 (500)
T TIGR03327 223 IVEKTGGCLVWGGATNLAPADDKIIKVERPLSIDPRGQMLASVMAKKGAIGADHVVIDIPVGKGAKVKTVEEGRKLARDF 302 (500)
T ss_pred HHHHCCEEEEECCccccCHHHHHHHHhccccCCCcHHHHHHHHHHHHHHcCCCeEEEEcCcCCCCcCCCHHHHHHHHHHH
Confidence 99999999999 999999999999999999998877666655543 3345555533 2 23456666
Q ss_pred HHHHHHcCCC
Q 026769 143 ANALQRFGLK 152 (233)
Q Consensus 143 a~~l~~lg~~ 152 (233)
.++.+.+|.+
T Consensus 303 v~vg~~~G~~ 312 (500)
T TIGR03327 303 IELGDRLGMN 312 (500)
T ss_pred HHHHHHcCCe
Confidence 7777777775
No 19
>COG0213 DeoA Thymidine phosphorylase [Nucleotide transport and metabolism]
Probab=97.17 E-value=0.00043 Score=64.43 Aligned_cols=137 Identities=26% Similarity=0.328 Sum_probs=109.5
Q ss_pred CceeEeccCCCCCCCCcchHHHHHHHHcCCCcEEeeCCCCCCCcchHHHHHHHc-CCCCCCCHHHHHHHHHHcCeeeeec
Q 026769 13 DAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQGSRSSSSACGSADVLEAL-GVVIDLDPEGVRRCVDEAGIGFMMS 91 (233)
Q Consensus 13 ~~~di~Gtg~Dg~~t~nist~aA~vlA~~G~~V~~HG~~~~~~k~Gs~dvle~L-Gi~~~~~~~~a~~~L~~~gi~fl~~ 91 (233)
..+|-=.|||=|- ++|...+-++|++|++|.|--+|+.+...|+.|-||.+ |+++..+.++-.+.+.++|+.-+.+
T Consensus 78 ~~vDKHStGGVgd---k~sL~l~PiVAA~Gl~VpK~SgRgLghtGGT~DklEsi~g~~~~~~e~~fi~~~~~~g~aiiGq 154 (435)
T COG0213 78 PVVDKHSTGGVGD---KTSLILVPIVAAAGLPVPKMSGRGLGHTGGTLDKLESIPGVNLELDEIKFIEQVKDNGVAIIGQ 154 (435)
T ss_pred ceecccCCCCCCc---ccchhHHHHHHhcCCcccccccCccccCccchhhhhccCCcccCcCHHHHHHHhhcCCeEEEeC
Confidence 4688888888772 35677888899999999999999999999999999999 9999999999999999999999988
Q ss_pred c-cccHHhhhhHHHHhhcC-CCchhHHhhhccCC---CCCCeEEEee------c------ChhhHHHHHHHHHHcCCC
Q 026769 92 T-KYHPAMKFVRPVRKKLK-VKTVFNILGPMLNP---ACVPFAVVGV------Y------NENLVLKMANALQRFGLK 152 (233)
Q Consensus 92 ~-~~~P~l~~l~~~R~~Lg-~Rt~~Ntl~~LlNP---~~~~~~v~Gv------~------h~~~~~~~a~~l~~lg~~ 152 (233)
. .+.|+=+.|..+|...+ +-++=-+..-.+.= +.+.+.|+=| | -+++...|.++.+.+|.+
T Consensus 155 s~~LaPADkklyalrdvtaTVdsipLiasSIMSKKlA~G~~~ivlDVkvG~GAfmkt~~~a~~LA~~mv~ig~~~g~~ 232 (435)
T COG0213 155 SGNLAPADKKLYALRDVTATVDSIPLIASSIMSKKLAAGADAIVLDVKVGSGAFMKTVEDARELAKAMVEIGKGLGRK 232 (435)
T ss_pred cCCcCcccceeEEeeeccccCCcHHHHHHHHHHHHHhccCCcEEEEecccCCCccCCHHHHHHHHHHHHHHHHhcCCe
Confidence 7 99999999999999998 66655555444432 3345555533 2 235566677777777774
No 20
>TIGR01457 HAD-SF-IIA-hyp2 HAD-superfamily subfamily IIA hydrolase, TIGR01457. This hypothetical equivalog is a member of the Class IIA subfamily of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this equivalog are all gram positive (low-GC) bacteria. Sequences found in this model are annotated variously as related to NagD or 4-nitrophenyl phosphatase, and this hypothetical equivalog, of all of those within the Class IIA subfamily, is most closely related to the E. coli NagD enzyme and the PGP_euk equivalog (TIGR01452). However, there is presently no evidence that this hypothetical equivalog has the same function of either those.
Probab=69.79 E-value=72 Score=27.48 Aligned_cols=120 Identities=13% Similarity=0.116 Sum_probs=69.4
Q ss_pred ceeEeccCCCCCCCCcchHHHHH-HHHcCCCcEEeeCCCCCCCcchHHHHHHHcCCCCC-----CCHHHHHHHHHHcCe-
Q 026769 14 AVDIVGTGGDGANTVNISTGASI-LAAACGAKVAKQGSRSSSSACGSADVLEALGVVID-----LDPEGVRRCVDEAGI- 86 (233)
Q Consensus 14 ~~di~Gtg~Dg~~t~nist~aA~-vlA~~G~~V~~HG~~~~~~k~Gs~dvle~LGi~~~-----~~~~~a~~~L~~~gi- 86 (233)
++|+=||=++|.+.++- +..++ -+.+.|++++.=-|.+.-+.....+.|+.+|++.. .+...+.+.|.+.+.
T Consensus 5 ~~D~DGtl~~~~~~i~~-a~~~l~~l~~~g~~~~~~Tnn~~r~~~~~~~~l~~~g~~~~~~~iit~~~~~~~~l~~~~~~ 83 (249)
T TIGR01457 5 LIDLDGTMYKGKERIPE-AETFVHELQKRDIPYLFVTNNSTRTPESVAEMLASFDIPATLETVFTASMATADYMNDLKLE 83 (249)
T ss_pred EEeCCCceEcCCeeCcC-HHHHHHHHHHCCCeEEEEeCCCCCCHHHHHHHHHHcCCCCChhhEeeHHHHHHHHHHhcCCC
Confidence 47888998988887763 44444 57778999986555444445567889999999764 233444566666432
Q ss_pred --eeeecccccHHhhhhHHHHhhcCCCchhHHhhhccCCCCCCeEEEeecChhhHHHHHHHHHHc
Q 026769 87 --GFMMSTKYHPAMKFVRPVRKKLKVKTVFNILGPMLNPACVPFAVVGVYNENLVLKMANALQRF 149 (233)
Q Consensus 87 --~fl~~~~~~P~l~~l~~~R~~Lg~Rt~~Ntl~~LlNP~~~~~~v~Gv~h~~~~~~~a~~l~~l 149 (233)
.|+-.. +.+. ..=+..|+.. .+-.+...++|....---+.+.+++..+
T Consensus 84 ~~v~~lg~---~~l~---~~l~~~g~~~---------~~~~~~~Vvvg~~~~~~y~~l~~a~~~l 133 (249)
T TIGR01457 84 KTVYVIGE---EGLK---EAIKEAGYVE---------DKEKPDYVVVGLDRQIDYEKFATATLAI 133 (249)
T ss_pred CEEEEEcC---hhHH---HHHHHcCCEe---------cCCCCCEEEEeCCCCCCHHHHHHHHHHH
Confidence 222111 1111 1112334421 1334577888887555555555666554
No 21
>COG1393 ArsC Arsenate reductase and related proteins, glutaredoxin family [Inorganic ion transport and metabolism]
Probab=68.57 E-value=3.9 Score=31.76 Aligned_cols=90 Identities=18% Similarity=0.218 Sum_probs=62.6
Q ss_pred cCCCCCCCHHHHHHHHHHcCeeeeecccc--cHHhhhhHHHHhhcC--CCchhHHhhhccCCCCCCeEEEeecChhhHHH
Q 026769 66 LGVVIDLDPEGVRRCVDEAGIGFMMSTKY--HPAMKFVRPVRKKLK--VKTVFNILGPMLNPACVPFAVVGVYNENLVLK 141 (233)
Q Consensus 66 LGi~~~~~~~~a~~~L~~~gi~fl~~~~~--~P~l~~l~~~R~~Lg--~Rt~~Ntl~~LlNP~~~~~~v~Gv~h~~~~~~ 141 (233)
.|++-+.+-..|.++|+++|+.|=..... -|.-..|..+=+++| ++.++|+-+....=++ ...-.....+..+.
T Consensus 6 y~~p~C~t~rka~~~L~~~gi~~~~~~y~~~~~s~~eL~~~l~~~g~~~~~li~t~~~~~r~L~--~~~~~~~~~~~~~~ 83 (117)
T COG1393 6 YGNPNCSTCRKALAWLEEHGIEYTFIDYLKTPPSREELKKILSKLGDGVEELINTRGTTYRELN--LDKEDLSDEELIEA 83 (117)
T ss_pred EeCCCChHHHHHHHHHHHcCCCcEEEEeecCCCCHHHHHHHHHHcCccHHHHHHhccchHHHcC--CcccccChHHHHHH
Confidence 46778888999999999999999544333 566778888889998 9999999888665554 33344555555555
Q ss_pred HHHHHHHcCCCeEEEEee
Q 026769 142 MANALQRFGLKRALVVHS 159 (233)
Q Consensus 142 ~a~~l~~lg~~~~lvv~G 159 (233)
+.+--..+ +|=+++.+
T Consensus 84 i~~~~~Li--kRPivv~~ 99 (117)
T COG1393 84 LLENPSLI--KRPIVVDN 99 (117)
T ss_pred HHhChhhc--cCCeEEeC
Confidence 55544333 34566654
No 22
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=63.88 E-value=32 Score=28.45 Aligned_cols=91 Identities=23% Similarity=0.202 Sum_probs=65.1
Q ss_pred eEeccCCCCCCCCcchHHHHHHHHcCCCcEEeeCC-----CCCCCcch--HHHHHHHcC-CCCCCCHHHHHHHHHHc---
Q 026769 16 DIVGTGGDGANTVNISTGASILAAACGAKVAKQGS-----RSSSSACG--SADVLEALG-VVIDLDPEGVRRCVDEA--- 84 (233)
Q Consensus 16 di~Gtg~Dg~~t~nist~aA~vlA~~G~~V~~HG~-----~~~~~k~G--s~dvle~LG-i~~~~~~~~a~~~L~~~--- 84 (233)
=|.|++|-|+ ||.|..+++..|++=+--|+ -...+..| ...++++=. ++-......+...+++.
T Consensus 4 iilG~pGaGK-----~T~A~~La~~~~i~hlstgd~~r~~~~~~t~lg~~~k~~i~~g~lv~d~i~~~~v~~rl~~~d~~ 78 (178)
T COG0563 4 LILGPPGAGK-----STLAKKLAKKLGLPHLDTGDILRAAIAERTELGEEIKKYIDKGELVPDEIVNGLVKERLDEADCK 78 (178)
T ss_pred EEECCCCCCH-----HHHHHHHHHHhCCcEEcHhHHhHhhhccCChHHHHHHHHHHcCCccchHHHHHHHHHHHHhhccc
Confidence 4789999998 57899999999988776443 22334555 455566666 33334456677777775
Q ss_pred -CeeeeecccccHHhhhhHHHHhhcCCC
Q 026769 85 -GIGFMMSTKYHPAMKFVRPVRKKLKVK 111 (233)
Q Consensus 85 -gi~fl~~~~~~P~l~~l~~~R~~Lg~R 111 (233)
||-|..-|.+...+..+-..-+++|.+
T Consensus 79 ~~~I~dg~PR~~~qa~~l~r~l~~~g~~ 106 (178)
T COG0563 79 AGFILDGFPRTLCQARALKRLLKELGVR 106 (178)
T ss_pred CeEEEeCCCCcHHHHHHHHHHHHHcCCC
Confidence 799999999999988888776776633
No 23
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=63.51 E-value=9.1 Score=28.55 Aligned_cols=58 Identities=24% Similarity=0.178 Sum_probs=40.5
Q ss_pred ceeEeccCCCCCCCCcchHHHHHHHHcCCCcEEeeCCCCCCCcchHHHHHHHcCCCCC
Q 026769 14 AVDIVGTGGDGANTVNISTGASILAAACGAKVAKQGSRSSSSACGSADVLEALGVVID 71 (233)
Q Consensus 14 ~~di~Gtg~Dg~~t~nist~aA~vlA~~G~~V~~HG~~~~~~k~Gs~dvle~LGi~~~ 71 (233)
++|+=||=|+|..-+.=+.-+---+.+.|.|+...-|.+..++....+-|+.+|+++.
T Consensus 2 l~D~dGvl~~g~~~ipga~e~l~~L~~~g~~~~~lTNns~~s~~~~~~~L~~~Gi~~~ 59 (101)
T PF13344_consen 2 LFDLDGVLYNGNEPIPGAVEALDALRERGKPVVFLTNNSSRSREEYAKKLKKLGIPVD 59 (101)
T ss_dssp EEESTTTSEETTEE-TTHHHHHHHHHHTTSEEEEEES-SSS-HHHHHHHHHHTTTT--
T ss_pred EEeCccEeEeCCCcCcCHHHHHHHHHHcCCCEEEEeCCCCCCHHHHHHHHHhcCcCCC
Confidence 3677788777777555455555566677999999999887777778888899999864
No 24
>PRK10853 putative reductase; Provisional
Probab=59.50 E-value=8.8 Score=29.72 Aligned_cols=56 Identities=14% Similarity=0.187 Sum_probs=41.0
Q ss_pred cCCCCCCCHHHHHHHHHHcCeeeeecccc--cHHhhhhHHHHhhcCCCchhHHhhhcc
Q 026769 66 LGVVIDLDPEGVRRCVDEAGIGFMMSTKY--HPAMKFVRPVRKKLKVKTVFNILGPML 121 (233)
Q Consensus 66 LGi~~~~~~~~a~~~L~~~gi~fl~~~~~--~P~l~~l~~~R~~Lg~Rt~~Ntl~~Ll 121 (233)
.|++-+.+-.+|.+.|+++|+.|-+.... -|.-..|..+-+++|+..++|+=+...
T Consensus 5 y~~~~C~t~rkA~~~L~~~~i~~~~~d~~k~p~s~~eL~~~l~~~g~~~l~n~~~~~~ 62 (118)
T PRK10853 5 YGIKNCDTIKKARRWLEAQGIDYRFHDYRVDGLDSELLQGFIDELGWEALLNTRGTTW 62 (118)
T ss_pred EcCCCCHHHHHHHHHHHHcCCCcEEeehccCCcCHHHHHHHHHHcCHHHHHhcCCchH
Confidence 36777888899999999999988776633 455667777777888766666555433
No 25
>cd00287 ribokinase_pfkB_like ribokinase/pfkB superfamily: Kinases that accept a wide variety of substrates, including carbohydrates and aromatic small molecules, all are phosphorylated at a hydroxyl group. The superfamily includes ribokinase, fructokinase, ketohexokinase, 2-dehydro-3-deoxygluconokinase, 1-phosphofructokinase, the minor 6-phosphofructokinase (PfkB), inosine-guanosine kinase, and adenosine kinase. Even though there is a high degree of structural conservation within this superfamily, their multimerization level varies widely, monomeric (e.g. adenosine kinase), dimeric (e.g. ribokinase), and trimeric (e.g THZ kinase).
Probab=59.42 E-value=48 Score=26.47 Aligned_cols=17 Identities=24% Similarity=0.323 Sum_probs=14.9
Q ss_pred HHHHHHHcCCCcEEeeC
Q 026769 33 GASILAAACGAKVAKQG 49 (233)
Q Consensus 33 ~aA~vlA~~G~~V~~HG 49 (233)
-+|..+|+.|.++...|
T Consensus 41 n~a~~l~~LG~~~~~~~ 57 (196)
T cd00287 41 NVAVALARLGVSVTLVG 57 (196)
T ss_pred HHHHHHHHCCCcEEEEE
Confidence 36888999999999999
No 26
>TIGR01616 nitro_assoc nitrogenase-associated protein. This model describes a small family of uncharacterized proteins found so far in alpha and gamma proteobacteria and in Nostoc sp. PCC 7120, a cyanobacterium. The gene for this protein is associated with nitrogenase genes. This family shows sequence similarity to TIGR00014, a glutaredoxin-dependent arsenate reductase that converts arsentate to arsenite for disposal. This family is one of several included in Pfam model pfam03960.
Probab=56.93 E-value=9.1 Score=30.06 Aligned_cols=56 Identities=13% Similarity=0.034 Sum_probs=44.0
Q ss_pred cCCCCCCCHHHHHHHHHHcCeeeeeccc--ccHHhhhhHHHHhhcCCCchhHHhhhcc
Q 026769 66 LGVVIDLDPEGVRRCVDEAGIGFMMSTK--YHPAMKFVRPVRKKLKVKTVFNILGPML 121 (233)
Q Consensus 66 LGi~~~~~~~~a~~~L~~~gi~fl~~~~--~~P~l~~l~~~R~~Lg~Rt~~Ntl~~Ll 121 (233)
.|++-+.+-.+|.+.|+++|+.|-+... --|.-..|..+-+++|.+.+||+=+...
T Consensus 6 Y~~p~Cst~RKA~~~L~~~gi~~~~~d~~~~p~t~~eL~~~l~~~g~~~lin~~~~~~ 63 (126)
T TIGR01616 6 YEKPGCANNARQKAALKASGHDVEVQDILKEPWHADTLRPYFGNKPVGSWFNRAAPRV 63 (126)
T ss_pred EeCCCCHHHHHHHHHHHHCCCCcEEEeccCCCcCHHHHHHHHHHcCHHHHHhccchHh
Confidence 3677788899999999999999877663 3456667777777888888888877754
No 27
>PRK10444 UMP phosphatase; Provisional
Probab=56.71 E-value=1.3e+02 Score=26.02 Aligned_cols=71 Identities=13% Similarity=-0.009 Sum_probs=50.0
Q ss_pred ceeEeccCCCCCCCCcchHHHHHHHHcCCCcEEeeCCCCCCCcchHHHHHHHcCCCCCCC-----HHHHHHHHHHc
Q 026769 14 AVDIVGTGGDGANTVNISTGASILAAACGAKVAKQGSRSSSSACGSADVLEALGVVIDLD-----PEGVRRCVDEA 84 (233)
Q Consensus 14 ~~di~Gtg~Dg~~t~nist~aA~vlA~~G~~V~~HG~~~~~~k~Gs~dvle~LGi~~~~~-----~~~a~~~L~~~ 84 (233)
++|+=||=+++...+.-+.-+--.+.+.|.+++.=-|++..+.....+-|+.+|+++..+ ..-+++.|.+.
T Consensus 5 ~~DlDGtL~~~~~~~p~a~~~l~~L~~~g~~~~~~Tn~~~~~~~~~~~~l~~~G~~~~~~~i~ts~~~~~~~L~~~ 80 (248)
T PRK10444 5 ICDIDGVLMHDNVAVPGAAEFLHRILDKGLPLVLLTNYPSQTGQDLANRFATAGVDVPDSVFYTSAMATADFLRRQ 80 (248)
T ss_pred EEeCCCceEeCCeeCccHHHHHHHHHHCCCeEEEEeCCCCCCHHHHHHHHHHcCCCCCHhhEecHHHHHHHHHHhC
Confidence 467778888777544444444445778899999877777666677888889999976432 45566777764
No 28
>cd01554 EPT-like Enol pyruvate transferases family includes EPSP synthases and UDP-N-acetylglucosamine enolpyruvyl transferase. Both enzymes catalyze the reaction of enolpyruvyl transfer.
Probab=53.46 E-value=25 Score=32.35 Aligned_cols=95 Identities=16% Similarity=0.020 Sum_probs=51.3
Q ss_pred CCcEEeeCCCCCCCc--chHHHHHHHcCCCCCCCHHHHHHHHHHcCeeeeecccccHHhhhhHHHHhhcCCCch--hHHh
Q 026769 42 GAKVAKQGSRSSSSA--CGSADVLEALGVVIDLDPEGVRRCVDEAGIGFMMSTKYHPAMKFVRPVRKKLKVKTV--FNIL 117 (233)
Q Consensus 42 G~~V~~HG~~~~~~k--~Gs~dvle~LGi~~~~~~~~a~~~L~~~gi~fl~~~~~~P~l~~l~~~R~~Lg~Rt~--~Ntl 117 (233)
+.+|...|......+ ....|+|+++|+.+...-. .+ +.+..... .+ ... .+-+... -+.+
T Consensus 97 ~~~v~~~G~~~l~~r~~~~l~~~L~~~Ga~i~~~~~--------~~--~~~~~~~~-~~---~~~--~i~~~~~~s~q~~ 160 (408)
T cd01554 97 DFEVELFGDDSLSKRPMDRVTLPLKKMGASISGQEE--------RD--LPPLLKGG-KN---LGP--IHYEDPIASAQVK 160 (408)
T ss_pred CCeEEEECCchhhcCChHHHHHHHHHCCCEEEECCC--------CC--cCCEEEec-CC---CCC--eEEeCCcccHHHH
Confidence 457888998887665 4479999999997643110 00 00000000 00 000 0111110 1111
Q ss_pred hh--ccCCC-CCCeEEEeecChhhHHHHHHHHHHcCCC
Q 026769 118 GP--MLNPA-CVPFAVVGVYNENLVLKMANALQRFGLK 152 (233)
Q Consensus 118 ~~--LlNP~-~~~~~v~Gv~h~~~~~~~a~~l~~lg~~ 152 (233)
.. ++-|+ .....+.++.+.+|.....++|+++|.+
T Consensus 161 ~~ll~aa~~~~g~~~i~~~~~~~~i~~~~~~L~~~G~~ 198 (408)
T cd01554 161 SALMFAALLAKGETVIIEAAKEPTINHTENMLQTFGGH 198 (408)
T ss_pred HHHHHHHhcCCCceEEEEeCCCCCHHHHHHHHHHCCCE
Confidence 11 11222 3457788888888999999999999974
No 29
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=52.96 E-value=1.5e+02 Score=28.11 Aligned_cols=136 Identities=14% Similarity=0.193 Sum_probs=78.6
Q ss_pred CceeEeccCCCCCCCCcchHHHHHHHHcCCCcEEeeCCCCCCCcchHHHHH----HHcCCCC--CCCHHHHHHHHHH---
Q 026769 13 DAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQGSRSSSSACGSADVL----EALGVVI--DLDPEGVRRCVDE--- 83 (233)
Q Consensus 13 ~~~di~Gtg~Dg~~t~nist~aA~vlA~~G~~V~~HG~~~~~~k~Gs~dvl----e~LGi~~--~~~~~~a~~~L~~--- 83 (233)
.++=++|.+|-|+.|.=...++.+.+-..|.+|..=-. .+-+.|..+-| +.+|+++ ..++++..+.+++
T Consensus 222 ~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~--D~~r~~a~eqL~~~a~~~~vp~~~~~~~~~l~~~l~~~~~ 299 (424)
T PRK05703 222 GVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITL--DTYRIGAVEQLKTYAKIMGIPVEVVYDPKELAKALEQLRD 299 (424)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEEC--CccHHHHHHHHHHHHHHhCCceEccCCHHhHHHHHHHhCC
Confidence 46778999988887654444443332355777775433 23455644443 4477765 4666666666654
Q ss_pred cCeeeeecccccHH-hhhhHHHHhhcCCCchhHHhhhccCCCCCCeEEEeecChhhHHHHHHHHHHcCCCeEEEEee
Q 026769 84 AGIGFMMSTKYHPA-MKFVRPVRKKLKVKTVFNILGPMLNPACVPFAVVGVYNENLVLKMANALQRFGLKRALVVHS 159 (233)
Q Consensus 84 ~gi~fl~~~~~~P~-l~~l~~~R~~Lg~Rt~~Ntl~~LlNP~~~~~~v~Gv~h~~~~~~~a~~l~~lg~~~~lvv~G 159 (233)
..+.+++.+-+.+. ...+..+++-+. ...+|......+-..+.+.-...+.+.++.++..+.++-|=
T Consensus 300 ~DlVlIDt~G~~~~d~~~~~~L~~ll~---------~~~~~~~~~LVl~a~~~~~~l~~~~~~f~~~~~~~vI~TKl 367 (424)
T PRK05703 300 CDVILIDTAGRSQRDKRLIEELKALIE---------FSGEPIDVYLVLSATTKYEDLKDIYKHFSRLPLDGLIFTKL 367 (424)
T ss_pred CCEEEEeCCCCCCCCHHHHHHHHHHHh---------ccCCCCeEEEEEECCCCHHHHHHHHHHhCCCCCCEEEEecc
Confidence 56788888877654 333334443333 12245433444444455556666677778888866555553
No 30
>PLN02428 lipoic acid synthase
Probab=50.45 E-value=1.4e+02 Score=27.76 Aligned_cols=110 Identities=13% Similarity=0.117 Sum_probs=68.3
Q ss_pred HHHHHHcCCCcEEeeCCCCCCCcchHHHHHHHcCCCCCCCHHHHHHHHH---Hc--Cee----ee--ecccccHHhhhhH
Q 026769 34 ASILAAACGAKVAKQGSRSSSSACGSADVLEALGVVIDLDPEGVRRCVD---EA--GIG----FM--MSTKYHPAMKFVR 102 (233)
Q Consensus 34 aA~vlA~~G~~V~~HG~~~~~~k~Gs~dvle~LGi~~~~~~~~a~~~L~---~~--gi~----fl--~~~~~~P~l~~l~ 102 (233)
+.-.++++|+.++-|+-+.+ ..+...+.- ...+.++..+.|+ +. |+. || .-+..---...+.
T Consensus 197 lL~~L~eAG~d~i~hnlETv------~rL~~~Ir~-~~~sye~~Le~L~~ak~~~pGi~tkSg~MvGLGET~Edv~e~l~ 269 (349)
T PLN02428 197 AVETVATSGLDVFAHNIETV------ERLQRIVRD-PRAGYKQSLDVLKHAKESKPGLLTKTSIMLGLGETDEEVVQTME 269 (349)
T ss_pred HHHHHHHcCCCEEccCccCc------HHHHHHhcC-CCCCHHHHHHHHHHHHHhCCCCeEEEeEEEecCCCHHHHHHHHH
Confidence 55667788999988886641 234443331 1234444444442 22 322 22 1233322233333
Q ss_pred HHHhhcCCCchhHHhhhccCCCCCCeEEEeecChhhHHHHHHHHHHcCCCe
Q 026769 103 PVRKKLKVKTVFNILGPMLNPACVPFAVVGVYNENLVLKMANALQRFGLKR 153 (233)
Q Consensus 103 ~~R~~Lg~Rt~~Ntl~~LlNP~~~~~~v~Gv~h~~~~~~~a~~l~~lg~~~ 153 (233)
.+ +++|+..+ +++..|.|......|.=+.||+-.+.+.+....+|++.
T Consensus 270 ~L-relgvd~v--tigqyL~Ps~~h~~v~~~v~p~~f~~~~~~~~~~gf~~ 317 (349)
T PLN02428 270 DL-RAAGVDVV--TFGQYLRPTKRHLPVKEYVTPEKFEFWREYGEEMGFRY 317 (349)
T ss_pred HH-HHcCCCEE--eeccccCCCcceeeeecccCHHHHHHHHHHHHHcCCce
Confidence 34 35665543 77778899999999999999999999999999999974
No 31
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=48.21 E-value=83 Score=27.17 Aligned_cols=90 Identities=17% Similarity=0.240 Sum_probs=49.0
Q ss_pred cCCCCCCCHHHHHHHHHHcCeeeeecc----------cccHHhhhhHHHHhhcCCCchhHHhhhccCCCCCCeEEEeecC
Q 026769 66 LGVVIDLDPEGVRRCVDEAGIGFMMST----------KYHPAMKFVRPVRKKLKVKTVFNILGPMLNPACVPFAVVGVYN 135 (233)
Q Consensus 66 LGi~~~~~~~~a~~~L~~~gi~fl~~~----------~~~P~l~~l~~~R~~Lg~Rt~~Ntl~~LlNP~~~~~~v~Gv~h 135 (233)
+|+|-..+..+..+.|++.|.-++... .+-+.. ....+++-..++..+..+..+-+-...+..++++++
T Consensus 8 ~G~P~~~~~~~~~~~l~~~Gad~iel~iPfsdPv~DG~~I~~a-~~~al~~g~~~~~~~~~~~~vr~~~~~pv~lm~y~n 86 (242)
T cd04724 8 AGDPDLETTLEILKALVEAGADIIELGIPFSDPVADGPVIQAA-SERALANGVTLKDVLELVKEIRKKNTIPIVLMGYYN 86 (242)
T ss_pred CCCCCHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCCHHHHHH-HHHHHHcCCCHHHHHHHHHHHhhcCCCCEEEEEecC
Confidence 455555556666777777777777554 121211 112233333334555566555443344456777777
Q ss_pred hhhH---HHHHHHHHHcCCCeEEEE
Q 026769 136 ENLV---LKMANALQRFGLKRALVV 157 (233)
Q Consensus 136 ~~~~---~~~a~~l~~lg~~~~lvv 157 (233)
|-|. +.+.+.++..|.+ .+++
T Consensus 87 ~~~~~G~~~fi~~~~~aG~~-giii 110 (242)
T cd04724 87 PILQYGLERFLRDAKEAGVD-GLII 110 (242)
T ss_pred HHHHhCHHHHHHHHHHCCCc-EEEE
Confidence 6443 5666667777774 4555
No 32
>PF03960 ArsC: ArsC family; InterPro: IPR006660 Several bacterial taxon have a chromosomal resistance system, encoded by the ars operon, for the detoxification of arsenate, arsenite, and antimonite []. This system transports arsenite and antimonite out of the cell. The pump is composed of two polypeptides, the products of the arsA and arsB genes. This two-subunit enzyme produces resistance to arsenite and antimonite. Arsenate, however, must first be reduced to arsenite before it is extruded. A third gene, arsC, expands the substrate specificity to allow for arsenate pumping and resistance. ArsC is an approximately 150-residue arsenate reductase that uses reduced glutathione (GSH) to convert arsenate to arsenite with a redox active cysteine residue in the active site. ArsC forms an active quaternary complex with GSH, arsenate, and glutaredoxin 1 (Grx1). The three ligands must be present simultaneously for reduction to occur []. The arsC family also comprises the Spx proteins which are GRAM-positive bacterial transcription factors that regulate the transcription of multiple genes in response to disulphide stress []. The arsC protein structure has been solved []. It belongs to the thioredoxin superfamily fold which is defined by a beta-sheet core surrounded by alpha-helices. The active cysteine residue of ArsC is located in the loop between the first beta-strand and the first helix, which is also conserved in the Spx protein and its homologues.; PDB: 2KOK_A 1SK1_A 1SK2_A 1JZW_A 1J9B_A 1S3C_A 1SD8_A 1SD9_A 1I9D_A 1SK0_A ....
Probab=48.13 E-value=14 Score=27.74 Aligned_cols=90 Identities=13% Similarity=0.120 Sum_probs=51.4
Q ss_pred CCCCCCCHHHHHHHHHHcCeeeeeccccc--HHhhhhHHHHhhcC--CCchhHHhhhccCCCCCCeEEEeecChhhHHHH
Q 026769 67 GVVIDLDPEGVRRCVDEAGIGFMMSTKYH--PAMKFVRPVRKKLK--VKTVFNILGPMLNPACVPFAVVGVYNENLVLKM 142 (233)
Q Consensus 67 Gi~~~~~~~~a~~~L~~~gi~fl~~~~~~--P~l~~l~~~R~~Lg--~Rt~~Ntl~~LlNP~~~~~~v~Gv~h~~~~~~~ 142 (233)
|++-+.+-.+|.+.|+++|+.|-.....- |.-..|..+=+.+| ++.++|+=++...-.. ....-.....++.+.+
T Consensus 2 ~~~~C~t~rka~~~L~~~gi~~~~~d~~k~p~s~~el~~~l~~~~~~~~~lin~~~~~~k~l~-~~~~~~~s~~e~i~~l 80 (110)
T PF03960_consen 2 GNPNCSTCRKALKWLEENGIEYEFIDYKKEPLSREELRELLSKLGNGPDDLINTRSKTYKELG-KLKKDDLSDEELIELL 80 (110)
T ss_dssp E-TT-HHHHHHHHHHHHTT--EEEEETTTS---HHHHHHHHHHHTSSGGGGB-TTSHHHHHTT-HHHCTTSBHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHHcCCCeEeehhhhCCCCHHHHHHHHHHhcccHHHHhcCccchHhhhh-hhhhhhhhhHHHHHHH
Confidence 45667778899999999999988776654 66777888888888 6777776665443333 1222233444555554
Q ss_pred HHHHHHcCCCeEEEEee
Q 026769 143 ANALQRFGLKRALVVHS 159 (233)
Q Consensus 143 a~~l~~lg~~~~lvv~G 159 (233)
.+=-..+- |=+++.|
T Consensus 81 ~~~p~Lik--RPIi~~~ 95 (110)
T PF03960_consen 81 LENPKLIK--RPIIVDG 95 (110)
T ss_dssp HHSGGGB---SSEEEET
T ss_pred HhChhhee--CCEEEEC
Confidence 44444442 3356655
No 33
>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.
Probab=45.54 E-value=17 Score=27.47 Aligned_cols=54 Identities=13% Similarity=0.138 Sum_probs=39.6
Q ss_pred CCCCCCCHHHHHHHHHHcCeeeeecccc--cHHhhhhHHHHhhcCCCchhHHhhhc
Q 026769 67 GVVIDLDPEGVRRCVDEAGIGFMMSTKY--HPAMKFVRPVRKKLKVKTVFNILGPM 120 (233)
Q Consensus 67 Gi~~~~~~~~a~~~L~~~gi~fl~~~~~--~P~l~~l~~~R~~Lg~Rt~~Ntl~~L 120 (233)
+.+.+.+-..|.+.|+++|+.|-..... -|.-..|..+-+++|++.++|+=++.
T Consensus 5 ~~~~C~~crka~~~L~~~~i~~~~~di~~~p~s~~eL~~~l~~~g~~~li~~~~~~ 60 (105)
T cd03035 5 GIKNCDTVKKARKWLEARGVAYTFHDYRKDGLDAATLERWLAKVGWETLLNKRGTT 60 (105)
T ss_pred eCCCCHHHHHHHHHHHHcCCCeEEEecccCCCCHHHHHHHHHHhChHHHHccCchH
Confidence 4566777788999999998887766533 55566777777788877777776653
No 34
>TIGR01458 HAD-SF-IIA-hyp3 HAD-superfamily subfamily IIA hydrolase, TIGR01458. This hypothetical equivalog is a member of the IIA subfamily (TIGR01460) of the haloacid dehalogenase superfamily of aspartate-nucleophile hydrolases. One sequence (GP|10716807) has been annotated as a "phospholysine phosphohistidine inorganic pyrophosphatase," probably in reference to studies on similarly described (but unsequenced) enzymes from bovine and rat tissues. However, the supporting information for this annotation has never been published.
Probab=45.04 E-value=73 Score=27.62 Aligned_cols=73 Identities=16% Similarity=0.115 Sum_probs=47.9
Q ss_pred ceeEeccCCCCCC---CCcchHHHH-HHHHcCCCcEEeeCCCCCCCcchHHHHHHHcCCCCC-----CCHHHHHHHHHHc
Q 026769 14 AVDIVGTGGDGAN---TVNISTGAS-ILAAACGAKVAKQGSRSSSSACGSADVLEALGVVID-----LDPEGVRRCVDEA 84 (233)
Q Consensus 14 ~~di~Gtg~Dg~~---t~nist~aA-~vlA~~G~~V~~HG~~~~~~k~Gs~dvle~LGi~~~-----~~~~~a~~~L~~~ 84 (233)
++|+=||=+++.. .+.-...-+ --+.+.|++++.=-|++..++....+.|+.+|+++. .+...+.+.|.+.
T Consensus 5 ~~D~DGtl~~~~~~~~~~~~~a~~al~~l~~~G~~~~~~Tn~~~~~~~~~~~~l~~~g~~~~~~~i~ts~~~~~~~l~~~ 84 (257)
T TIGR01458 5 LLDISGVLYISDAKSGVAVPGSQEAVKRLRGASVKVRFVTNTTKESKQDLLERLQRLGFDISEDEVFTPAPAARQLLEEK 84 (257)
T ss_pred EEeCCCeEEeCCCcccCcCCCHHHHHHHHHHCCCeEEEEECCCCCCHHHHHHHHHHcCCCCCHHHeEcHHHHHHHHHHhc
Confidence 3677777665544 122233433 345668999998888777777788899999999763 2224456777776
Q ss_pred Ce
Q 026769 85 GI 86 (233)
Q Consensus 85 gi 86 (233)
++
T Consensus 85 ~~ 86 (257)
T TIGR01458 85 QL 86 (257)
T ss_pred CC
Confidence 54
No 35
>PF02641 DUF190: Uncharacterized ACR, COG1993; InterPro: IPR003793 This is an uncharacterised domain found in proteins of unknown function.; PDB: 2DCL_C 1O51_A.
Probab=44.82 E-value=40 Score=25.17 Aligned_cols=30 Identities=20% Similarity=0.219 Sum_probs=24.5
Q ss_pred cChhhHHHHHHHHHHcCCCeEEEEee-CCcc
Q 026769 134 YNENLVLKMANALQRFGLKRALVVHS-EGLD 163 (233)
Q Consensus 134 ~h~~~~~~~a~~l~~lg~~~~lvv~G-eG~d 163 (233)
.++++.+.+.+.++..|...+.|++| +|.-
T Consensus 17 ~g~~l~~~ll~~~~~~gi~GaTV~rgi~G~G 47 (101)
T PF02641_consen 17 GGKPLYEWLLERAREAGIAGATVFRGIEGFG 47 (101)
T ss_dssp TTEEHHHHHHHHHHHTT-SEEEEEE-SEEEE
T ss_pred CceEHHHHHHHHHHHCCCCeEEEEcceeeeC
Confidence 46788889999999999999999999 8864
No 36
>cd03033 ArsC_15kD Arsenate Reductase (ArsC) family, 15kD protein subfamily; composed of proteins of unknown function with similarity to thioredoxin-fold arsenic reductases, ArsC. It is encoded by an ORF present in a gene cluster associated with nitrogen fixation that also encodes dinitrogenase reductase ADP-ribosyltransferase (DRAT) and dinitrogenase reductase activating glycohydrolase (DRAG). ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via glutaredoxin, through a single catalytic cysteine.
Probab=44.74 E-value=18 Score=27.77 Aligned_cols=56 Identities=16% Similarity=0.103 Sum_probs=41.2
Q ss_pred CCCCCCCHHHHHHHHHHcCeeeeecccc--cHHhhhhHHHHhhcCCCchhHHhhhccC
Q 026769 67 GVVIDLDPEGVRRCVDEAGIGFMMSTKY--HPAMKFVRPVRKKLKVKTVFNILGPMLN 122 (233)
Q Consensus 67 Gi~~~~~~~~a~~~L~~~gi~fl~~~~~--~P~l~~l~~~R~~Lg~Rt~~Ntl~~LlN 122 (233)
+.+-+.+-.+|.+.|+++|+.|-..... -|.-..|..+-+++|++.++|+-+...-
T Consensus 6 ~~p~C~~crkA~~~L~~~gi~~~~~d~~~~p~s~~eL~~~l~~~g~~~l~n~~~~~~r 63 (113)
T cd03033 6 EKPGCANNARQKALLEAAGHEVEVRDLLTEPWTAETLRPFFGDLPVAEWFNPAAPRVK 63 (113)
T ss_pred ECCCCHHHHHHHHHHHHcCCCcEEeehhcCCCCHHHHHHHHHHcCHHHHHhcccHHHH
Confidence 4566777788999999999888766543 3556777777778898888877665444
No 37
>COG0761 lytB 4-Hydroxy-3-methylbut-2-enyl diphosphate reductase IspH [Lipid metabolism]
Probab=41.59 E-value=66 Score=29.10 Aligned_cols=125 Identities=18% Similarity=0.193 Sum_probs=79.5
Q ss_pred HHHHHHcCCCcEEeeCCCCCCCcchHHHHHHHcCCCCCCCHHHHHHHH--HHcCeeeeecccccHH--hhhhHHHHhhcC
Q 026769 34 ASILAAACGAKVAKQGSRSSSSACGSADVLEALGVVIDLDPEGVRRCV--DEAGIGFMMSTKYHPA--MKFVRPVRKKLK 109 (233)
Q Consensus 34 aA~vlA~~G~~V~~HG~~~~~~k~Gs~dvle~LGi~~~~~~~~a~~~L--~~~gi~fl~~~~~~P~--l~~l~~~R~~Lg 109 (233)
.+--.++.|..|+++|.++.+--.|..--+..=|+.+-.+++++++.- .+..++|+.+-..+.. ..-+..+|+.+-
T Consensus 106 ~v~~~~~~G~~iIliG~~gHpEv~Gt~Gq~~~~~~~lve~~~d~~~l~~~~~~~l~~~tQTTls~ddt~~Iv~~l~~r~p 185 (294)
T COG0761 106 EVERYAREGYEIILIGHKGHPEVIGTMGQYPEGGVLLVESVEDVANLKVQLPDKLAFVTQTTLSVDDTAEIVAALKERFP 185 (294)
T ss_pred HHHHHHhCCCEEEEEccCCCCceeeeccccCCCceEEEecHHHHHhcccCCcccEEEEeeeecCHHHHHHHHHHHHHhCc
Confidence 345678889999999999988766632211111566667888888874 3448999998877665 333444554443
Q ss_pred --CCchhHHhhh----------ccCCCCCCeEEEeecChhhHHHHHHHHHHcCCCeEEEEee
Q 026769 110 --VKTVFNILGP----------MLNPACVPFAVVGVYNENLVLKMANALQRFGLKRALVVHS 159 (233)
Q Consensus 110 --~Rt~~Ntl~~----------LlNP~~~~~~v~Gv~h~~~~~~~a~~l~~lg~~~~lvv~G 159 (233)
--.++|++-. =|-|----..|+|-.|.+=-.++.|+.+..|. .+..|-.
T Consensus 186 ~~~~~~~~~ICyAT~nRQ~Avk~la~~~Dl~iVVG~~nSSNs~rL~eiA~~~g~-~aylId~ 246 (294)
T COG0761 186 KIEVPPFNDICYATQNRQDAVKELAPEVDLVIVVGSKNSSNSNRLAEIAKRHGK-PAYLIDD 246 (294)
T ss_pred cccCCcccccchhhhhHHHHHHHHhhcCCEEEEECCCCCccHHHHHHHHHHhCC-CeEEeCC
Confidence 2344554322 12222112567888888888888888888887 4555543
No 38
>PF07131 DUF1382: Protein of unknown function (DUF1382); InterPro: IPR009814 This entry is represented by Bacteriophage lambda, Xis. This entry overlaps with IPR009750, both representing lambda Xis. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family consists of several hypothetical Escherichia coli and Bacteriophage lambda-like proteins of around 60 residues in length. The function of this family is unknown.
Probab=40.90 E-value=23 Score=24.32 Aligned_cols=22 Identities=14% Similarity=0.188 Sum_probs=18.3
Q ss_pred HHHHHHHHcCeeeeecccccHH
Q 026769 76 GVRRCVDEAGIGFMMSTKYHPA 97 (233)
Q Consensus 76 ~a~~~L~~~gi~fl~~~~~~P~ 97 (233)
++++.|.+.||-|++.|.-..+
T Consensus 14 E~A~~La~~GIRFVpiPv~~de 35 (61)
T PF07131_consen 14 EMAHSLAHIGIRFVPIPVVTDE 35 (61)
T ss_pred HHHHHHHHcCceeeccccccHH
Confidence 4667899999999999977655
No 39
>COG0106 HisA Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase [Amino acid transport and metabolism]
Probab=40.73 E-value=1.4e+02 Score=26.25 Aligned_cols=78 Identities=13% Similarity=0.193 Sum_probs=56.0
Q ss_pred CCHHHHHHHHHHcCeeeeecccccHHh-------hhhHHHHhhc--------CCCchhHHhhhccCCCCCCeEEEeecCh
Q 026769 72 LDPEGVRRCVDEAGIGFMMSTKYHPAM-------KFVRPVRKKL--------KVKTVFNILGPMLNPACVPFAVVGVYNE 136 (233)
Q Consensus 72 ~~~~~a~~~L~~~gi~fl~~~~~~P~l-------~~l~~~R~~L--------g~Rt~~Ntl~~LlNP~~~~~~v~Gv~h~ 136 (233)
-+|.+.++.+.+.|+-++++=.+.=+. ..+..+.+.. |+|| .+.++.++. +.....++|-+--
T Consensus 31 ~~P~~~a~~~~~~Ga~~lHlVDLdgA~~g~~~n~~~i~~i~~~~~~~vQvGGGIRs-~~~v~~ll~-~G~~rViiGt~av 108 (241)
T COG0106 31 DDPLEVAKKWSDQGAEWLHLVDLDGAKAGGPRNLEAIKEILEATDVPVQVGGGIRS-LEDVEALLD-AGVARVIIGTAAV 108 (241)
T ss_pred CCHHHHHHHHHHcCCcEEEEeeccccccCCcccHHHHHHHHHhCCCCEEeeCCcCC-HHHHHHHHH-CCCCEEEEeccee
Confidence 367888888888999888775433222 2334444444 6676 689999999 8888889987776
Q ss_pred hhHHHHHHHHHHcCC
Q 026769 137 NLVLKMANALQRFGL 151 (233)
Q Consensus 137 ~~~~~~a~~l~~lg~ 151 (233)
.=.+.+.++++..|-
T Consensus 109 ~~p~~v~~~~~~~g~ 123 (241)
T COG0106 109 KNPDLVKELCEEYGD 123 (241)
T ss_pred cCHHHHHHHHHHcCC
Confidence 777778888888883
No 40
>PF08844 DUF1815: Domain of unknown function (DUF1815); InterPro: IPR014943 This entry is about 100 amino acids in length and is functionally uncharacterised.
Probab=39.74 E-value=1.5e+02 Score=22.39 Aligned_cols=50 Identities=24% Similarity=0.387 Sum_probs=34.3
Q ss_pred HHHHHHHHcCCCeEEEEeeCCccccCCCCCeEEEEEeCCeEEEEEeCCCCCCCCC
Q 026769 141 KMANALQRFGLKRALVVHSEGLDEMSPLGPGLILDVTQEKIERFSFDPLDYGIPR 195 (233)
Q Consensus 141 ~~a~~l~~lg~~~~lvv~GeG~dE~s~~~~t~v~~~~~g~i~~~~i~P~~~gl~~ 195 (233)
-++..++..|+...--.+|+|.+ -++.+.+..+.++...+|.+ +|||+.=
T Consensus 21 ALa~~Le~rG~~AsCYtC~dG~~---~~~ASFmv~lg~~HliRFLV--Sd~GIsW 70 (105)
T PF08844_consen 21 ALAIVLERRGYLASCYTCGDGRD---MNSASFMVSLGDNHLIRFLV--SDYGISW 70 (105)
T ss_pred HHHHHHHhCCceeEEEecCCCCC---CCceeEEEEcCCCcEEEEEE--ecCCeeE
Confidence 34667788898533334457664 35667788888888888877 4899874
No 41
>PRK12379 propionate/acetate kinase; Provisional
Probab=39.10 E-value=1.2e+02 Score=28.60 Aligned_cols=129 Identities=16% Similarity=0.216 Sum_probs=67.2
Q ss_pred CCCcEEeeCCCCCC-CcchHHHHHHHcCC--C--CCCCHHHHHHH--HHHc--Ce--eeeecccccHHhhhhHH------
Q 026769 41 CGAKVAKQGSRSSS-SACGSADVLEALGV--V--IDLDPEGVRRC--VDEA--GI--GFMMSTKYHPAMKFVRP------ 103 (233)
Q Consensus 41 ~G~~V~~HG~~~~~-~k~Gs~dvle~LGi--~--~~~~~~~a~~~--L~~~--gi--~fl~~~~~~P~l~~l~~------ 103 (233)
-|+||+ ||....+ +..=..++++.|-- + ....|....-. ..+. ++ +|++=+.||-.|.....
T Consensus 83 VGHRVV-HGG~~f~~~v~V~~~v~~~l~~~~~lAPlHnp~nL~~i~a~~~~~P~~pqvavfDtafh~~mp~~A~~yaiP~ 161 (396)
T PRK12379 83 IGHRIA-HGGSIFTESVIITDEVIDNIRRVSPLAPLHNYANLSGIEAAQQLFPGVTQVAVFDTSFHQTLAPEAYLYGLPW 161 (396)
T ss_pred EEEeee-CCCCCCCCCEEECHHHHHHHHhcCcCcccCCHHHHHHHHHHHHhCCCCCEEEEEcCccccCCCHHHHHcCCCH
Confidence 466665 7775533 33334555555442 1 12333332211 2222 32 56666777655544332
Q ss_pred -HHhhcCCCchhHHhhhccCCCCCCeEEEeecChhhHHHHHHHHHHc-CCCeEEEEe-eCCccccCCCCCeEEEEEeCCe
Q 026769 104 -VRKKLKVKTVFNILGPMLNPACVPFAVVGVYNENLVLKMANALQRF-GLKRALVVH-SEGLDEMSPLGPGLILDVTQEK 180 (233)
Q Consensus 104 -~R~~Lg~Rt~~Ntl~~LlNP~~~~~~v~Gv~h~~~~~~~a~~l~~l-g~~~~lvv~-GeG~dE~s~~~~t~v~~~~~g~ 180 (233)
++++.|+| ++...|..|+-...++++.+..- ..-+.++.| |.|.. ++.+++|+
T Consensus 162 ~~~~~~giR---------------ryGFHGlS~~~va~~~a~~lg~~~~~~~lIv~HLG~G~S---------i~Ai~~Gk 217 (396)
T PRK12379 162 EYYEELGVR---------------RYGFHGTSHRYVSQRAHSLLNLDEDDSGLVVAHLGNGAS---------ICAVRNGQ 217 (396)
T ss_pred HHHHhCCce---------------EeeehHHHHHHHHHHHHHHhCCChhHCCEEEEEeCCCcc---------hheeeCCE
Confidence 23334444 46677888887777777776332 222788888 66652 35567787
Q ss_pred EEEEE--eCCCCCCCCC
Q 026769 181 IERFS--FDPLDYGIPR 195 (233)
Q Consensus 181 i~~~~--i~P~~~gl~~ 195 (233)
..+.+ ++|.+ |+..
T Consensus 218 svDtsmG~tPle-Gl~m 233 (396)
T PRK12379 218 SVDTSMGMTPLE-GLMM 233 (396)
T ss_pred EEEeCCCCCccc-CCCC
Confidence 54433 35555 4443
No 42
>COG0773 MurC UDP-N-acetylmuramate-alanine ligase [Cell envelope biogenesis, outer membrane]
Probab=38.73 E-value=3.7e+02 Score=25.96 Aligned_cols=126 Identities=25% Similarity=0.338 Sum_probs=83.4
Q ss_pred CceeEeccCCCCCCCCcchHHHHHHHHcCCCcEEeeCCCCCCCcchHHHHHHHcCCCCC--CCHHHHHHHHHHcCeeeee
Q 026769 13 DAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQGSRSSSSACGSADVLEALGVVID--LDPEGVRRCVDEAGIGFMM 90 (233)
Q Consensus 13 ~~~di~Gtg~Dg~~t~nist~aA~vlA~~G~~V~~HG~~~~~~k~Gs~dvle~LGi~~~--~~~~~a~~~L~~~gi~fl~ 90 (233)
..|-|+|+|+ ...|.+|...|.+|. |++...+. ..+-|+++|+.+- .+++ ..++. . ..+.
T Consensus 11 HfIGIgG~GM---------sglA~iL~~~G~~Vs--GSD~~~~~--~t~~L~~~G~~i~~gh~~~---ni~~~-~-~VV~ 72 (459)
T COG0773 11 HFIGIGGIGM---------SGLAEILLNLGYKVS--GSDLAESP--MTQRLEALGIEIFIGHDAE---NILDA-D-VVVV 72 (459)
T ss_pred EEEeeccccH---------HHHHHHHHhCCCceE--CccccccH--HHHHHHHCCCeEeCCCCHH---HcCCC-c-eEEE
Confidence 3566777776 567889999999998 88775555 7889999999764 3333 22222 1 1344
Q ss_pred cccc---cHHhhhhHHHHhhcCCCchhHHhhhccCCCCCCeEEEeecChhhH-HHHHHHHHHcCCCeEEEEee
Q 026769 91 STKY---HPAMKFVRPVRKKLKVKTVFNILGPMLNPACVPFAVVGVYNENLV-LKMANALQRFGLKRALVVHS 159 (233)
Q Consensus 91 ~~~~---~P~l~~l~~~R~~Lg~Rt~~Ntl~~LlNP~~~~~~v~Gv~h~~~~-~~~a~~l~~lg~~~~lvv~G 159 (233)
..++ +|.+ ....++.+-+-+=--.++-|+.. +....|.|.==+.-- .+++.++...|.+-..++-|
T Consensus 73 s~Ai~~~NpEi--~~A~e~~ipi~~r~e~Laelm~~-~~~iaVaGTHGKTTTTsmla~vl~~~gldPtf~iGG 142 (459)
T COG0773 73 SNAIKEDNPEI--VAALERGIPVISRAEMLAELMRF-RTSIAVAGTHGKTTTTSMLAWVLEAAGLDPTFLIGG 142 (459)
T ss_pred ecccCCCCHHH--HHHHHcCCCeEcHHHHHHHHHhC-CeeEEEeCCCCchhHHHHHHHHHHhCCCCCEEEECc
Confidence 4444 4544 22333455555667888888888 666777776555444 45578888888887777776
No 43
>TIGR00676 fadh2 5,10-methylenetetrahydrofolate reductase, prokaryotic form. This protein is an FAD-containing flavoprotein.
Probab=35.13 E-value=67 Score=28.30 Aligned_cols=69 Identities=14% Similarity=0.239 Sum_probs=33.7
Q ss_pred HHHHHHcCeeeeecccc------cHHhhhhHHHHhhcCCCchhHHhhhccCCCCCCeEEEeecChhhHHHHHHHHHHcCC
Q 026769 78 RRCVDEAGIGFMMSTKY------HPAMKFVRPVRKKLKVKTVFNILGPMLNPACVPFAVVGVYNENLVLKMANALQRFGL 151 (233)
Q Consensus 78 ~~~L~~~gi~fl~~~~~------~P~l~~l~~~R~~Lg~Rt~~Ntl~~LlNP~~~~~~v~Gv~h~~~~~~~a~~l~~lg~ 151 (233)
.+.|.+.+.-|+....- ...+.....++++.|++++.|...+ + .++.-.+....-+..+|.
T Consensus 21 ~~~l~~~~pd~isvT~~~~~~~~~~t~~~a~~l~~~~g~~~i~Hlt~r------------~-~n~~~l~~~L~~~~~~Gi 87 (272)
T TIGR00676 21 VDRLSPLDPDFVSVTYGAGGSTRDRTVRIVRRIKKETGIPTVPHLTCI------------G-ATREEIREILREYRELGI 87 (272)
T ss_pred HHHHhcCCCCEEEeccCCCCCcHHHHHHHHHHHHHhcCCCeeEEeeec------------C-CCHHHHHHHHHHHHHCCC
Confidence 34455555555555332 1122233445556666665544332 2 122223333334466777
Q ss_pred CeEEEEee
Q 026769 152 KRALVVHS 159 (233)
Q Consensus 152 ~~~lvv~G 159 (233)
++.++++|
T Consensus 88 ~nvL~l~G 95 (272)
T TIGR00676 88 RHILALRG 95 (272)
T ss_pred CEEEEeCC
Confidence 77777777
No 44
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=35.06 E-value=4.1e+02 Score=25.42 Aligned_cols=137 Identities=12% Similarity=0.161 Sum_probs=75.5
Q ss_pred CceeEeccCCCCCCCCcchHHHHHHHHcCCCcEEeeCCCCCCCcchH----HHHHHHcCCCCC--CCHHHHHHHHHHc--
Q 026769 13 DAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQGSRSSSSACGS----ADVLEALGVVID--LDPEGVRRCVDEA-- 84 (233)
Q Consensus 13 ~~~di~Gtg~Dg~~t~nist~aA~vlA~~G~~V~~HG~~~~~~k~Gs----~dvle~LGi~~~--~~~~~a~~~L~~~-- 84 (233)
.++=++|.+|-|+.|.-..-++.. ....|.+|..-..+. -+.++ ....+.+|++.. .++.++.+.+++.
T Consensus 224 ~vi~lvGptGvGKTTtaaKLA~~~-~~~~G~~V~Lit~Dt--~R~aA~eQLk~yAe~lgvp~~~~~~~~~l~~~l~~~~~ 300 (432)
T PRK12724 224 KVVFFVGPTGSGKTTSIAKLAAKY-FLHMGKSVSLYTTDN--YRIAAIEQLKRYADTMGMPFYPVKDIKKFKETLARDGS 300 (432)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH-HHhcCCeEEEecccc--hhhhHHHHHHHHHHhcCCCeeehHHHHHHHHHHHhCCC
Confidence 356689999988865433333322 234578887655443 33343 333467788763 2355566666544
Q ss_pred CeeeeecccccHH-hhhhHHHHhhcCCCchhHHhhhccCCCCCCeEEEeecChhhHHHHHHHHHHcCCCeEEEEee
Q 026769 85 GIGFMMSTKYHPA-MKFVRPVRKKLKVKTVFNILGPMLNPACVPFAVVGVYNENLVLKMANALQRFGLKRALVVHS 159 (233)
Q Consensus 85 gi~fl~~~~~~P~-l~~l~~~R~~Lg~Rt~~Ntl~~LlNP~~~~~~v~Gv~h~~~~~~~a~~l~~lg~~~~lvv~G 159 (233)
.+.+++.+-+.|. ...+-.+++.+. .+++ -+|...-..+-..+++.-....++.++.+|.++.++-|=
T Consensus 301 D~VLIDTaGr~~rd~~~l~eL~~~~~------~~~~-~~~~e~~LVLsAt~~~~~~~~~~~~f~~~~~~glIlTKL 369 (432)
T PRK12724 301 ELILIDTAGYSHRNLEQLERMQSFYS------CFGE-KDSVENLLVLSSTSSYHHTLTVLKAYESLNYRRILLTKL 369 (432)
T ss_pred CEEEEeCCCCCccCHHHHHHHHHHHH------hhcC-CCCCeEEEEEeCCCCHHHHHHHHHHhcCCCCCEEEEEcc
Confidence 4556666666542 223333332221 1111 113323344455666666777788888899987777774
No 45
>PRK01184 hypothetical protein; Provisional
Probab=33.96 E-value=2.3e+02 Score=22.71 Aligned_cols=21 Identities=14% Similarity=0.116 Sum_probs=10.8
Q ss_pred CCeEEEeecChhhHHHHHHHH
Q 026769 126 VPFAVVGVYNENLVLKMANAL 146 (233)
Q Consensus 126 ~~~~v~Gv~h~~~~~~~a~~l 146 (233)
....+-|+.++...+.+.+.+
T Consensus 81 ~~vvidg~r~~~e~~~~~~~~ 101 (184)
T PRK01184 81 EVVVIDGVRGDAEVEYFRKEF 101 (184)
T ss_pred CcEEEeCCCCHHHHHHHHHhC
Confidence 345566665555554444443
No 46
>COG3448 CBS-domain-containing membrane protein [Signal transduction mechanisms]
Probab=33.72 E-value=2.1e+02 Score=26.38 Aligned_cols=89 Identities=26% Similarity=0.408 Sum_probs=64.2
Q ss_pred cEEeeCCCCCCC--cch--HHHH---HHHcCCCCCCCHHHHHHHHHHcCeeeeecccccHHhhhhHHHHhhcCCCchhHH
Q 026769 44 KVAKQGSRSSSS--ACG--SADV---LEALGVVIDLDPEGVRRCVDEAGIGFMMSTKYHPAMKFVRPVRKKLKVKTVFNI 116 (233)
Q Consensus 44 ~V~~HG~~~~~~--k~G--s~dv---le~LGi~~~~~~~~a~~~L~~~gi~fl~~~~~~P~l~~l~~~R~~Lg~Rt~~Nt 116 (233)
+.-.||....++ |.| ++|+ |+.+|=..+.+.++.+..|.+. .+..+|+++|-=|...+
T Consensus 186 ~an~HgT~Dppp~~rvgfs~~Dld~aL~~~~E~lDIdrddLe~llr~~---------------elqa~~R~~~~LtcadI 250 (382)
T COG3448 186 PANLHGTADPPPSQRVGFSSEDLDAALQRLGETLDIDRDDLERLLRET---------------ELQALRRRMGELTCADI 250 (382)
T ss_pred cccccCCCCCCchhccCCCHHHHHHHHHhcCceecCCHHHHHHHHHHH---------------HHHHHHHHhccccHHHh
Confidence 456799888655 566 6766 6667878888999999998874 35667777777666666
Q ss_pred hhhccCCCCCCeEEEeecChhhHHHHHHHHHHcCCCeEEEE
Q 026769 117 LGPMLNPACVPFAVVGVYNENLVLKMANALQRFGLKRALVV 157 (233)
Q Consensus 117 l~~LlNP~~~~~~v~Gv~h~~~~~~~a~~l~~lg~~~~lvv 157 (233)
+.+ .|+++.-....+.-.+.++.-+.+ ++=|
T Consensus 251 MSr---------dVvtv~~~ts~dhA~~ll~~H~ik-aLPV 281 (382)
T COG3448 251 MSR---------DVVTVSTDTSIDHARKLLQEHRIK-ALPV 281 (382)
T ss_pred cCc---------cceecCCcCChHHHHHHHHHcCcc-cccc
Confidence 544 578888888888777777777774 4533
No 47
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=33.00 E-value=48 Score=27.52 Aligned_cols=25 Identities=20% Similarity=0.317 Sum_probs=19.4
Q ss_pred eeEeccCCCCCCCCcchHHHHHHHHcCCCcEE
Q 026769 15 VDIVGTGGDGANTVNISTGASILAAACGAKVA 46 (233)
Q Consensus 15 ~di~Gtg~Dg~~t~nist~aA~vlA~~G~~V~ 46 (233)
|.|+|.|| +-...|.++|..|++|.
T Consensus 3 I~ViGlGy-------vGl~~A~~lA~~G~~V~ 27 (185)
T PF03721_consen 3 IAVIGLGY-------VGLPLAAALAEKGHQVI 27 (185)
T ss_dssp EEEE--ST-------THHHHHHHHHHTTSEEE
T ss_pred EEEECCCc-------chHHHHHHHHhCCCEEE
Confidence 67889999 55678889999999998
No 48
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=32.97 E-value=72 Score=27.48 Aligned_cols=79 Identities=19% Similarity=0.191 Sum_probs=52.3
Q ss_pred cchHHHHHHHHcCCCcEEeeCCCCCCCcchHHHHHHHcCCCCCCCHHHHHHHHHHcCeeeeecccccHHhhhhHHHHhhc
Q 026769 29 NISTGASILAAACGAKVAKQGSRSSSSACGSADVLEALGVVIDLDPEGVRRCVDEAGIGFMMSTKYHPAMKFVRPVRKKL 108 (233)
Q Consensus 29 nist~aA~vlA~~G~~V~~HG~~~~~~k~Gs~dvle~LGi~~~~~~~~a~~~L~~~gi~fl~~~~~~P~l~~l~~~R~~L 108 (233)
|+-...|..++++|+.|..=+.|...+....++. +|.. .+.-+.++..+..-++|+-.|..+ ...-+..+|..+
T Consensus 11 niG~alA~~~a~ag~eV~igs~r~~~~~~a~a~~---l~~~--i~~~~~~dA~~~aDVVvLAVP~~a-~~~v~~~l~~~~ 84 (211)
T COG2085 11 NIGSALALRLAKAGHEVIIGSSRGPKALAAAAAA---LGPL--ITGGSNEDAAALADVVVLAVPFEA-IPDVLAELRDAL 84 (211)
T ss_pred hHHHHHHHHHHhCCCeEEEecCCChhHHHHHHHh---hccc--cccCChHHHHhcCCEEEEeccHHH-HHhHHHHHHHHh
Confidence 7889999999999999875444443333334444 4443 344455555778889999988653 335678888888
Q ss_pred CCCch
Q 026769 109 KVKTV 113 (233)
Q Consensus 109 g~Rt~ 113 (233)
+=+.+
T Consensus 85 ~~KIv 89 (211)
T COG2085 85 GGKIV 89 (211)
T ss_pred CCeEE
Confidence 74433
No 49
>TIGR00014 arsC arsenate reductase (glutaredoxin). composed of two polypeptides, the products of the arsA and arsB genes. The pump alone produces resistance to arsenite and antimonite. This protein, ArsC, catalyzes the reduction of arsenate to arsenite, and thus extends resistance to include arsenate.
Probab=32.53 E-value=59 Score=24.70 Aligned_cols=53 Identities=11% Similarity=0.060 Sum_probs=38.7
Q ss_pred CCCCCCCHHHHHHHHHHcCeeeeecc--cccHHhhhhHHHHhhcCCCc---hhHHhhh
Q 026769 67 GVVIDLDPEGVRRCVDEAGIGFMMST--KYHPAMKFVRPVRKKLKVKT---VFNILGP 119 (233)
Q Consensus 67 Gi~~~~~~~~a~~~L~~~gi~fl~~~--~~~P~l~~l~~~R~~Lg~Rt---~~Ntl~~ 119 (233)
|++-+.+-.+|.+.|+++|+.|-... .--|.-..|..+-+.+|+.+ ++|+=++
T Consensus 5 ~~~~C~t~rkA~~~L~~~~i~~~~~di~~~p~t~~el~~~l~~~g~~~~~~lin~~~~ 62 (114)
T TIGR00014 5 HNPRCSKSRNTLALLEDKGIEPEVVKYLKNPPTKSELEAIFAKLGLTVAREMIRTKEA 62 (114)
T ss_pred ECCCCHHHHHHHHHHHHCCCCeEEEeccCCCcCHHHHHHHHHHcCCchHHHHHhcCCc
Confidence 56777888899999999998866554 44555667778878888754 6665544
No 50
>PRK07058 acetate kinase; Provisional
Probab=32.24 E-value=1.3e+02 Score=28.49 Aligned_cols=59 Identities=17% Similarity=0.285 Sum_probs=38.7
Q ss_pred CeEEEeecChhhHHHHHHHHHHcCCCeEEEEe-eCCccccCCCCCeEEEEEeCCeEEEEEe--CCCCCCCCC
Q 026769 127 PFAVVGVYNENLVLKMANALQRFGLKRALVVH-SEGLDEMSPLGPGLILDVTQEKIERFSF--DPLDYGIPR 195 (233)
Q Consensus 127 ~~~v~Gv~h~~~~~~~a~~l~~lg~~~~lvv~-GeG~dE~s~~~~t~v~~~~~g~i~~~~i--~P~~~gl~~ 195 (233)
+|-..|..|+-...++++.++....-+.++.| |.|. .++.+++|+..+.+. +|.+ ||+.
T Consensus 176 RYGfHGlS~~~va~~~a~~l~~~~~~~~Iv~HLG~G~---------Si~Ai~~GksvDtsmG~tpLe-GL~m 237 (396)
T PRK07058 176 RYGFHGLSYKFVAGELRRRAPELARGKVVAAHLGSGA---------SLCALDAGKSRDTSMGFSTLD-GIPM 237 (396)
T ss_pred ccCCcHHHHHHHHHHHHHhcCCcccCCEEEEEeCCCc---------eeeeeeCCEEEEcCCCCCCcC-CCcc
Confidence 57788899988888888887433333778888 6665 246678887554433 5644 4444
No 51
>cd03032 ArsC_Spx Arsenate Reductase (ArsC) family, Spx subfamily; Spx is a unique RNA polymerase (RNAP)-binding protein present in bacilli and some mollicutes. It inhibits transcription by binding to the C-terminal domain of the alpha subunit of RNAP, disrupting complex formation between RNAP and certain transcriptional activator proteins like ResD and ComA. In response to oxidative stress, Spx can also activate transcription, making it a general regulator that exerts both positive and negative control over transcription initiation. Spx has been shown to exert redox-sensitive transcriptional control over genes like trxA (TRX) and trxB (TRX reductase), genes that function in thiol homeostasis. This redox-sensitive activity is dependent on the presence of a CXXC motif, present in some members of the Spx subfamily, that acts as a thiol/disulfide switch. Spx has also been shown to repress genes in a sulfate-dependent manner independent of the presence of the CXXC motif.
Probab=32.22 E-value=45 Score=25.24 Aligned_cols=59 Identities=8% Similarity=0.008 Sum_probs=41.1
Q ss_pred CCCCCCCHHHHHHHHHHcCeeeeecc--cccHHhhhhHHHHhhc--CCCchhHHhhhccCCCC
Q 026769 67 GVVIDLDPEGVRRCVDEAGIGFMMST--KYHPAMKFVRPVRKKL--KVKTVFNILGPMLNPAC 125 (233)
Q Consensus 67 Gi~~~~~~~~a~~~L~~~gi~fl~~~--~~~P~l~~l~~~R~~L--g~Rt~~Ntl~~LlNP~~ 125 (233)
|.+-+.+-..|.+.|++.|+.|-... .-.|....|..+-+.+ |++.++|+=++..--..
T Consensus 6 ~~~~C~~c~ka~~~L~~~gi~~~~idi~~~~~~~~el~~~~~~~~~~~~~l~n~~~~~~k~l~ 68 (115)
T cd03032 6 TSPSCSSCRKAKQWLEEHQIPFEERNLFKQPLTKEELKEILSLTENGVEDIISTRSKAFKNLN 68 (115)
T ss_pred eCCCCHHHHHHHHHHHHCCCceEEEecCCCcchHHHHHHHHHHhcCCHHHHHhcCcHHHHHcC
Confidence 45666677888999999888776554 3455667777777777 66777777666555443
No 52
>PRK10026 arsenate reductase; Provisional
Probab=31.80 E-value=46 Score=26.73 Aligned_cols=56 Identities=4% Similarity=-0.050 Sum_probs=39.8
Q ss_pred CCCCCCCHHHHHHHHHHcCeeeeecccc--cHHhhhhHHHHhhcCC--CchhHHhhhccC
Q 026769 67 GVVIDLDPEGVRRCVDEAGIGFMMSTKY--HPAMKFVRPVRKKLKV--KTVFNILGPMLN 122 (233)
Q Consensus 67 Gi~~~~~~~~a~~~L~~~gi~fl~~~~~--~P~l~~l~~~R~~Lg~--Rt~~Ntl~~LlN 122 (233)
|++-|.+-.+|.++|+++|+.|-+.... -|.-..|..+-+.+|. +.++|+=+...-
T Consensus 8 ~~p~Cst~RKA~~wL~~~gi~~~~~d~~~~ppt~~eL~~~l~~~g~~~~~lint~~~~yr 67 (141)
T PRK10026 8 HNPACGTSRNTLEMIRNSGTEPTIIHYLETPPTRDELVKLIADMGISVRALLRKNVEPYE 67 (141)
T ss_pred eCCCCHHHHHHHHHHHHCCCCcEEEeeeCCCcCHHHHHHHHHhCCCCHHHHHHcCCchHH
Confidence 5677888889999999999888776643 3555667777677774 677776665433
No 53
>TIGR00677 fadh2_euk methylenetetrahydrofolate reductase, eukaryotic type. This protein is an FAD-containing flavoprotein.
Probab=31.24 E-value=93 Score=27.69 Aligned_cols=70 Identities=11% Similarity=0.059 Sum_probs=41.6
Q ss_pred HHHHHHcCeeeeeccccc------HHhhhhHHHHhhcCCCchhHHhhhccCCCCCCeEEEeecChhhHHHHHHHHHHcCC
Q 026769 78 RRCVDEAGIGFMMSTKYH------PAMKFVRPVRKKLKVKTVFNILGPMLNPACVPFAVVGVYNENLVLKMANALQRFGL 151 (233)
Q Consensus 78 ~~~L~~~gi~fl~~~~~~------P~l~~l~~~R~~Lg~Rt~~Ntl~~LlNP~~~~~~v~Gv~h~~~~~~~a~~l~~lg~ 151 (233)
.+.|.+.+-.|+....-. -.+.....++++.|++++.|...+ +.....+.+ ...-+..+|.
T Consensus 22 ~~~l~~~~p~fvsvT~~~~~~~~~~t~~~~~~l~~~~g~~~i~Hltcr------------~~~~~~l~~-~L~~~~~~Gi 88 (281)
T TIGR00677 22 MDRMVASGPLFIDITWGAGGTTAELTLTIASRAQNVVGVETCMHLTCT------------NMPIEMIDD-ALERAYSNGI 88 (281)
T ss_pred HHHHhhCCCCEEEeccCCCCcchhhHHHHHHHHHHhcCCCeeEEeccC------------CCCHHHHHH-HHHHHHHCCC
Confidence 344556667677665421 245566677788888877665543 222222333 3333467889
Q ss_pred CeEEEEeeC
Q 026769 152 KRALVVHSE 160 (233)
Q Consensus 152 ~~~lvv~Ge 160 (233)
++.++++|+
T Consensus 89 ~niLal~GD 97 (281)
T TIGR00677 89 QNILALRGD 97 (281)
T ss_pred CEEEEECCC
Confidence 899999983
No 54
>PRK02308 uvsE putative UV damage endonuclease; Provisional
Probab=30.20 E-value=43 Score=30.24 Aligned_cols=96 Identities=14% Similarity=0.156 Sum_probs=62.4
Q ss_pred HHHHHcCCCCCCCHHHHHHHHHHcCeeeeecc-------------------cccHHhhhhHHHHhhcCCCchhHHhhhcc
Q 026769 61 DVLEALGVVIDLDPEGVRRCVDEAGIGFMMST-------------------KYHPAMKFVRPVRKKLKVKTVFNILGPML 121 (233)
Q Consensus 61 dvle~LGi~~~~~~~~a~~~L~~~gi~fl~~~-------------------~~~P~l~~l~~~R~~Lg~Rt~~Ntl~~Ll 121 (233)
+-|+.+...-..+...+.+...++||.|+=.+ .+.+.+..+..+.++.|+|..+| -..++
T Consensus 37 ~~l~~~~~~Nl~~l~~~l~~~~~~~I~~~R~sS~l~P~~~h~~~~~w~~~~~~~~~~~~~g~~~~~~~irls~H-p~y~i 115 (303)
T PRK02308 37 EKLEEIALSNLENLLRILKYNIAHGIGLFRLSSSLIPLATHPELEGWDYIEPFKEELREIGEFIKEHNIRLSFH-PDQFV 115 (303)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCEEEcccCcCCCCCChhhcccCCCCCCHHHHHHHHHHHHHcCCCeecc-Chhhh
Confidence 44444444322344555556667888876332 12235667777888999999999 77999
Q ss_pred CCCCCCeEEEeecChhhHHHHHHHHHHcCCC--eEEEEe
Q 026769 122 NPACVPFAVVGVYNENLVLKMANALQRFGLK--RALVVH 158 (233)
Q Consensus 122 NP~~~~~~v~Gv~h~~~~~~~a~~l~~lg~~--~~lvv~ 158 (233)
|+..++-.+.=- +-..+..+++.+..+|.+ ..+|+|
T Consensus 116 nL~S~~~ev~e~-Si~~L~~~~~~~~~lG~~~~~~vViH 153 (303)
T PRK02308 116 VLNSPKPEVVEN-SIKDLEYHAKLLDLMGIDDSSKINIH 153 (303)
T ss_pred cCCCCCHHHHHH-HHHHHHHHHHHHHHCCCCCCCEEEEC
Confidence 998865322221 235566778888899986 389999
No 55
>KOG4201 consensus Anthranilate synthase component II [Amino acid transport and metabolism]
Probab=29.85 E-value=1.8e+02 Score=25.55 Aligned_cols=118 Identities=15% Similarity=0.264 Sum_probs=80.2
Q ss_pred CCCCCHHHHHHHHHHcCeeeeec---cccc-HHhhhhHHHHhhcCCCch-------------hHHhhhccCCCCCCeEEE
Q 026769 69 VIDLDPEGVRRCVDEAGIGFMMS---TKYH-PAMKFVRPVRKKLKVKTV-------------FNILGPMLNPACVPFAVV 131 (233)
Q Consensus 69 ~~~~~~~~a~~~L~~~gi~fl~~---~~~~-P~l~~l~~~R~~Lg~Rt~-------------~Ntl~~LlNP~~~~~~v~ 131 (233)
..+.++.+.+...++.|-+.+.. |.|. -.+..|..+|+..|+.-+ ..+.+-=++-+.+-..+.
T Consensus 88 k~d~~~ae~A~~Yak~GAs~iSVLTe~k~FkGsledL~~irk~~~~k~p~~~lL~KeFivd~~QI~~aR~~GADaVLLIv 167 (289)
T KOG4201|consen 88 KLDANAAEQALAYAKGGASCISVLTEPKWFKGSLEDLVAIRKIAGVKCPPKCLLRKEFIVDPYQIYEARLKGADAVLLIV 167 (289)
T ss_pred ccccCHHHHHHHHHhcCceeeeeecCchhhcccHHHHHHHHHHhcCcCChHhHhHHHHccCHHHHHHHHhcCCceeehHH
Confidence 45567888888899988776643 5554 459999999999998744 344444455555566677
Q ss_pred eecChhhHHHHHHHHHHcCCCeEEEEee-CCccccCCCCCeEEEEEeCCeEEEEEeC
Q 026769 132 GVYNENLVLKMANALQRFGLKRALVVHS-EGLDEMSPLGPGLILDVTQEKIERFSFD 187 (233)
Q Consensus 132 Gv~h~~~~~~~a~~l~~lg~~~~lvv~G-eG~dE~s~~~~t~v~~~~~g~i~~~~i~ 187 (233)
.+-.......+-...+.+|...-+=|+. |-++-.--- -..+..+.+...++|++|
T Consensus 168 amLs~~~lk~l~k~~K~L~me~LVEVn~~eEm~ralei-GakvvGvNNRnL~sFeVD 223 (289)
T KOG4201|consen 168 AMLSDLLLKELYKISKDLGMEPLVEVNDEEEMQRALEI-GAKVVGVNNRNLHSFEVD 223 (289)
T ss_pred HHcChHHHHHHHHHHHHcCCcceeeeccHHHHHHHHHh-CcEEEeecCCccceeeec
Confidence 7888888888899999999976556666 433211111 234556666666777765
No 56
>PF13344 Hydrolase_6: Haloacid dehalogenase-like hydrolase; PDB: 2HO4_B 1YV9_A 1WVI_B 3EPR_A 2P27_A 2OYC_A 2CFT_A 2P69_A 2CFS_A 2CFR_A ....
Probab=29.04 E-value=77 Score=23.45 Aligned_cols=64 Identities=14% Similarity=0.107 Sum_probs=38.9
Q ss_pred EeeCCCCCCCcchHHHHHHHcCCC-------CCCCHHHHHHHHHHcCeeeeecccccHHhhhhHHHHhhcC
Q 026769 46 AKQGSRSSSSACGSADVLEALGVV-------IDLDPEGVRRCVDEAGIGFMMSTKYHPAMKFVRPVRKKLK 109 (233)
Q Consensus 46 ~~HG~~~~~~k~Gs~dvle~LGi~-------~~~~~~~a~~~L~~~gi~fl~~~~~~P~l~~l~~~R~~Lg 109 (233)
+.+|+...++-.-.-+.|++.|.+ ...++++..+.|++.||..=.-..+.|......-+++..+
T Consensus 9 l~~g~~~ipga~e~l~~L~~~g~~~~~lTNns~~s~~~~~~~L~~~Gi~~~~~~i~ts~~~~~~~l~~~~~ 79 (101)
T PF13344_consen 9 LYNGNEPIPGAVEALDALRERGKPVVFLTNNSSRSREEYAKKLKKLGIPVDEDEIITSGMAAAEYLKEHKG 79 (101)
T ss_dssp SEETTEE-TTHHHHHHHHHHTTSEEEEEES-SSS-HHHHHHHHHHTTTT--GGGEEEHHHHHHHHHHHHTT
T ss_pred eEeCCCcCcCHHHHHHHHHHcCCCEEEEeCCCCCCHHHHHHHHHhcCcCCCcCEEEChHHHHHHHHHhcCC
Confidence 345665555444444455555863 3467788999999999986666677777666666665433
No 57
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=28.84 E-value=4.9e+02 Score=24.98 Aligned_cols=132 Identities=9% Similarity=0.119 Sum_probs=74.9
Q ss_pred CceeEeccCCCCCCCCcchHHHHHHHHcCCCcEEeeCCCCCCCcchHHH----HHHHcCCCC--CCCHHHHHHHHHH---
Q 026769 13 DAVDIVGTGGDGANTVNISTGASILAAACGAKVAKQGSRSSSSACGSAD----VLEALGVVI--DLDPEGVRRCVDE--- 83 (233)
Q Consensus 13 ~~~di~Gtg~Dg~~t~nist~aA~vlA~~G~~V~~HG~~~~~~k~Gs~d----vle~LGi~~--~~~~~~a~~~L~~--- 83 (233)
..+-++|.+|-|+.|+=.-.+. .+...|.+|..--.+ +-|.|+.+ .-+.+|+++ ..++++..+.++.
T Consensus 242 ~vI~LVGptGvGKTTTiaKLA~--~L~~~GkkVglI~aD--t~RiaAvEQLk~yae~lgipv~v~~d~~~L~~aL~~lk~ 317 (436)
T PRK11889 242 QTIALIGPTGVGKTTTLAKMAW--QFHGKKKTVGFITTD--HSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKE 317 (436)
T ss_pred cEEEEECCCCCcHHHHHHHHHH--HHHHcCCcEEEEecC--CcchHHHHHHHHHhhhcCCcEEecCCHHHHHHHHHHHHh
Confidence 4677999988888654332222 234668888764332 34555433 334578876 3678887777743
Q ss_pred ---cCeeeeecccccHH-hhhhHHHHhhcCCCchhHHhhhccCCCCCCeEEEee-cChhhHHHHHHHHHHcCCCeEEEEe
Q 026769 84 ---AGIGFMMSTKYHPA-MKFVRPVRKKLKVKTVFNILGPMLNPACVPFAVVGV-YNENLVLKMANALQRFGLKRALVVH 158 (233)
Q Consensus 84 ---~gi~fl~~~~~~P~-l~~l~~~R~~Lg~Rt~~Ntl~~LlNP~~~~~~v~Gv-~h~~~~~~~a~~l~~lg~~~~lvv~ 158 (233)
..+.+++.+--++. ...+..+++.+... .|- ..+.|+.. ....=....++.++.++.++.++-|
T Consensus 318 ~~~~DvVLIDTaGRs~kd~~lm~EL~~~lk~~----------~Pd-evlLVLsATtk~~d~~~i~~~F~~~~idglI~TK 386 (436)
T PRK11889 318 EARVDYILIDTAGKNYRASETVEEMIETMGQV----------EPD-YICLTLSASMKSKDMIEIITNFKDIHIDGIVFTK 386 (436)
T ss_pred ccCCCEEEEeCccccCcCHHHHHHHHHHHhhc----------CCC-eEEEEECCccChHHHHHHHHHhcCCCCCEEEEEc
Confidence 36788887765552 22344444433321 132 12444543 2333335566777778987766666
Q ss_pred e
Q 026769 159 S 159 (233)
Q Consensus 159 G 159 (233)
=
T Consensus 387 L 387 (436)
T PRK11889 387 F 387 (436)
T ss_pred c
Confidence 4
No 58
>TIGR01081 mpl UDP-N-acetylmuramate:L-alanyl-gamma-D-glutamyl-meso-diaminopimelate ligase. Alternate name: murein tripeptide ligase
Probab=28.78 E-value=2.4e+02 Score=26.42 Aligned_cols=117 Identities=21% Similarity=0.257 Sum_probs=61.5
Q ss_pred HHHHHHHHcCCCcEEeeCCCCCCCcchHHHHHHHcCCCCCC--CHHHHHHHHHHcCeeeeecccc---cHHhhhhHHHHh
Q 026769 32 TGASILAAACGAKVAKQGSRSSSSACGSADVLEALGVVIDL--DPEGVRRCVDEAGIGFMMSTKY---HPAMKFVRPVRK 106 (233)
Q Consensus 32 t~aA~vlA~~G~~V~~HG~~~~~~k~Gs~dvle~LGi~~~~--~~~~a~~~L~~~gi~fl~~~~~---~P~l~~l~~~R~ 106 (233)
.+.|.+|++.|..|. |.+.....- ..+-|+++|+.+.. +++ ..+++..+. +..|.. +|.+... |
T Consensus 13 ~~la~~l~~~G~~V~--~~D~~~~~~-~~~~l~~~gi~~~~~~~~~---~~~~~~d~v-V~SpgI~~~~~~~~~a---~- 81 (448)
T TIGR01081 13 GGLAMIAKQLGHEVT--GSDANVYPP-MSTQLEAQGIEIIEGFDAA---QLEPKPDLV-VIGNAMKRGNPCVEAV---L- 81 (448)
T ss_pred HHHHHHHHhCCCEEE--EECCCCCcH-HHHHHHHCCCEEeCCCCHH---HCCCCCCEE-EECCCCCCCCHHHHHH---H-
Confidence 567788889999997 666433221 12237889987642 232 223333433 334433 4444333 2
Q ss_pred hcCC--CchhHHhhhccCCCCCCeEEEeecChhh-HHHHHHHHHHcCCCeEEEEee
Q 026769 107 KLKV--KTVFNILGPMLNPACVPFAVVGVYNENL-VLKMANALQRFGLKRALVVHS 159 (233)
Q Consensus 107 ~Lg~--Rt~~Ntl~~LlNP~~~~~~v~Gv~h~~~-~~~~a~~l~~lg~~~~lvv~G 159 (233)
+.|+ .+=.-.+..++.+.+....|+|-.=+.- -..++.+|+..|.+...++.+
T Consensus 82 ~~~i~v~~~~e~~~~~~~~~~~~I~ITGT~GKTTTt~li~~iL~~~g~~~~~~~~~ 137 (448)
T TIGR01081 82 NLNLPYTSGPQWLHDFVLHDRWVLAVAGTHGKTTTASMLAWVLEQCGLKPGFLIGG 137 (448)
T ss_pred HCCCCEEeHHHHHHHHHhcCCCEEEEECCCcHHHHHHHHHHHHHhcCCCCcEEeCc
Confidence 3333 3444445554322222456666665554 455678888888765444443
No 59
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=28.51 E-value=2.3e+02 Score=22.92 Aligned_cols=69 Identities=23% Similarity=0.299 Sum_probs=46.5
Q ss_pred CCHHHHHHHHHHcCeeeeecccccHHhhhhHHHHhhcCCCchhHHhhhccCCCCCCeEEEee-----cChhhHHHHHHHH
Q 026769 72 LDPEGVRRCVDEAGIGFMMSTKYHPAMKFVRPVRKKLKVKTVFNILGPMLNPACVPFAVVGV-----YNENLVLKMANAL 146 (233)
Q Consensus 72 ~~~~~a~~~L~~~gi~fl~~~~~~P~l~~l~~~R~~Lg~Rt~~Ntl~~LlNP~~~~~~v~Gv-----~h~~~~~~~a~~l 146 (233)
....-+++.|.+.||--++...+.++=..+... +.....++|+ .|..+.+.+.|++
T Consensus 27 ~gakvia~~l~d~GfeVi~~g~~~tp~e~v~aA-------------------~~~dv~vIgvSsl~g~h~~l~~~lve~l 87 (143)
T COG2185 27 RGAKVIARALADAGFEVINLGLFQTPEEAVRAA-------------------VEEDVDVIGVSSLDGGHLTLVPGLVEAL 87 (143)
T ss_pred cchHHHHHHHHhCCceEEecCCcCCHHHHHHHH-------------------HhcCCCEEEEEeccchHHHHHHHHHHHH
Confidence 345667788888888888887776653222221 1223344444 4788999999999
Q ss_pred HHcCCCeEEEEee
Q 026769 147 QRFGLKRALVVHS 159 (233)
Q Consensus 147 ~~lg~~~~lvv~G 159 (233)
+..|.+..+++-|
T Consensus 88 re~G~~~i~v~~G 100 (143)
T COG2185 88 REAGVEDILVVVG 100 (143)
T ss_pred HHhCCcceEEeec
Confidence 9999988775654
No 60
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=28.44 E-value=85 Score=28.69 Aligned_cols=40 Identities=18% Similarity=0.181 Sum_probs=28.9
Q ss_pred cchHHHHHHHHcCCCcEEeeCCC--C--CCCc-----chHHHHHHHcCC
Q 026769 29 NISTGASILAAACGAKVAKQGSR--S--SSSA-----CGSADVLEALGV 68 (233)
Q Consensus 29 nist~aA~vlA~~G~~V~~HG~~--~--~~~k-----~Gs~dvle~LGi 68 (233)
..-.++|+.|++.|++|.+---. . ..++ .++-++|++||+
T Consensus 12 ~aGl~lA~~L~~~G~~V~l~E~~~~~~~~~~r~~~l~~~~~~~L~~lG~ 60 (387)
T COG0654 12 PAGLALALALARAGLDVTLLERAPRELLERGRGIALSPNALRALERLGL 60 (387)
T ss_pred HHHHHHHHHHHhCCCcEEEEccCccccccCceeeeecHhHHHHHHHcCC
Confidence 35678999999999999975543 1 1111 227899999998
No 61
>PF07521 RMMBL: RNA-metabolising metallo-beta-lactamase; InterPro: IPR011108 The metallo-beta-lactamase fold contains five sequence motifs. The first four motifs are found in IPR001279 from INTERPRO and are common to all metallo-beta-lactamases. The fifth motif appears to be specific to function. This entry represents the fifth motif from metallo-beta-lactamases involved in RNA metabolism [].; PDB: 3ZQ4_D 2I7T_A 2I7V_A 2YCB_B 3BK1_A 3T3N_A 3BK2_A 3T3O_A 3AF5_A 3AF6_A ....
Probab=28.14 E-value=44 Score=20.94 Aligned_cols=35 Identities=9% Similarity=0.210 Sum_probs=22.4
Q ss_pred CCeEEEeecChhhHHHHHHHHHHcCCCeEEEEeeC
Q 026769 126 VPFAVVGVYNENLVLKMANALQRFGLKRALVVHSE 160 (233)
Q Consensus 126 ~~~~v~Gv~h~~~~~~~a~~l~~lg~~~~lvv~Ge 160 (233)
+....+.++-..-.+-+.+.++.+..++.++||||
T Consensus 7 a~v~~~~fSgHad~~~L~~~i~~~~p~~vilVHGe 41 (43)
T PF07521_consen 7 ARVEQIDFSGHADREELLEFIEQLNPRKVILVHGE 41 (43)
T ss_dssp SEEEESGCSSS-BHHHHHHHHHHHCSSEEEEESSE
T ss_pred EEEEEEeecCCCCHHHHHHHHHhcCCCEEEEecCC
Confidence 33334445544555666777777777899999983
No 62
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=27.86 E-value=3.2e+02 Score=24.02 Aligned_cols=58 Identities=14% Similarity=0.331 Sum_probs=37.9
Q ss_pred hHHHHhhcCCCchhHHhhhcc-CCCCCCeEEEeecChhhH---HHHHHHHHHcCCCeEEEEe
Q 026769 101 VRPVRKKLKVKTVFNILGPML-NPACVPFAVVGVYNENLV---LKMANALQRFGLKRALVVH 158 (233)
Q Consensus 101 l~~~R~~Lg~Rt~~Ntl~~Ll-NP~~~~~~v~Gv~h~~~~---~~~a~~l~~lg~~~~lvv~ 158 (233)
...+++-+.++..|+.+.++- +-...+..+++|+++=|. +++.+.++..|.+..++..
T Consensus 64 ~~AL~~G~~~~~~~~~~~~~r~~~~~~p~vlm~Y~N~i~~~G~e~f~~~~~~aGvdGviipD 125 (258)
T PRK13111 64 LRALAAGVTLADVFELVREIREKDPTIPIVLMTYYNPIFQYGVERFAADAAEAGVDGLIIPD 125 (258)
T ss_pred HHHHHcCCCHHHHHHHHHHHHhcCCCCCEEEEecccHHhhcCHHHHHHHHHHcCCcEEEECC
Confidence 344555566667788887766 434456679999987554 4566777777886555543
No 63
>PF14567 SUKH_5: SMI1-KNR4 cell-wall; PDB: 2PAG_A.
Probab=27.85 E-value=1.8e+02 Score=23.18 Aligned_cols=91 Identities=12% Similarity=0.139 Sum_probs=39.8
Q ss_pred HHhhhhHHHHhhcCCCchhHHhhhccCC---CCCCeEEEeecCh---hhHHHHHHHHHHcCCC-eEEEEeeCCccccCCC
Q 026769 96 PAMKFVRPVRKKLKVKTVFNILGPMLNP---ACVPFAVVGVYNE---NLVLKMANALQRFGLK-RALVVHSEGLDEMSPL 168 (233)
Q Consensus 96 P~l~~l~~~R~~Lg~Rt~~Ntl~~LlNP---~~~~~~v~Gv~h~---~~~~~~a~~l~~lg~~-~~lvv~GeG~dE~s~~ 168 (233)
|-...|..+-++||++=+.-...=|+.= +....-..|+.+| .|...++.-++..|.. ..+.++.+|.+-.-..
T Consensus 22 pd~e~I~~~Ee~L~i~lP~eyk~fL~~~s~v~~G~~E~~~i~~~~s~~~l~e~~~~ar~~glP~~~ipice~~~~yYcl~ 101 (132)
T PF14567_consen 22 PDDEQIVEAEEQLGISLPEEYKEFLLEASDVIYGGLEPVGIGDPPSHTYLPEVTADARSIGLPRELIPICEDGGDYYCLD 101 (132)
T ss_dssp --HHHHHHHHHHHT----HHHHHHHHHHTT--BTTB-B-BSS-TTSTTBHHHHHHHHHHHT--TTSEEEEEETTEEEEE-
T ss_pred CCHHHHHHHHHHHCCCCCHHHHHHHHHCCCeeecceEEEEEEcCCCcccHHHHHHHHHHcCCChhheeEEecCCcEEEEe
Confidence 5567778888888887554443333322 2245666677766 4455555555667754 5667776554333222
Q ss_pred CCeEEEEEe-CCeEEEEEe
Q 026769 169 GPGLILDVT-QEKIERFSF 186 (233)
Q Consensus 169 ~~t~v~~~~-~g~i~~~~i 186 (233)
....|..|. +|.+++..|
T Consensus 102 ~~g~V~~W~~~g~~~~e~w 120 (132)
T PF14567_consen 102 QEGEVVYWSHNGEISEEKW 120 (132)
T ss_dssp TTS-EEEE------EEEEE
T ss_pred CCCeEEEecCCCCcccccc
Confidence 333343333 676655555
No 64
>cd04723 HisA_HisF Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase (HisA) and the cyclase subunit of imidazoleglycerol phosphate synthase (HisF). The ProFAR isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. The Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and pl
Probab=27.84 E-value=3.5e+02 Score=23.09 Aligned_cols=78 Identities=15% Similarity=0.153 Sum_probs=55.9
Q ss_pred CCCHHHHHHHHHHcCeeeeecccccH------HhhhhHHHHhhc--------CCCchhHHhhhccCCCCCCeEEEeecCh
Q 026769 71 DLDPEGVRRCVDEAGIGFMMSTKYHP------AMKFVRPVRKKL--------KVKTVFNILGPMLNPACVPFAVVGVYNE 136 (233)
Q Consensus 71 ~~~~~~a~~~L~~~gi~fl~~~~~~P------~l~~l~~~R~~L--------g~Rt~~Ntl~~LlNP~~~~~~v~Gv~h~ 136 (233)
..+|.+.++.+.+.|+-+++.-.+.. .+..+..+.+.. |+|| +-.+.++++ ..+.+.++|..--
T Consensus 34 ~~dp~~~a~~~~~~g~~~l~i~DLd~~~~~~~n~~~i~~i~~~~~~~v~vgGGir~-~edv~~~l~-~Ga~~viigt~~~ 111 (233)
T cd04723 34 TSDPLDVARAYKELGFRGLYIADLDAIMGRGDNDEAIRELAAAWPLGLWVDGGIRS-LENAQEWLK-RGASRVIVGTETL 111 (233)
T ss_pred CCCHHHHHHHHHHCCCCEEEEEeCccccCCCccHHHHHHHHHhCCCCEEEecCcCC-HHHHHHHHH-cCCCeEEEcceec
Confidence 45799999999999998887765543 355566666653 6666 455566665 5567778887776
Q ss_pred hhHHHHHHHHHHcCC
Q 026769 137 NLVLKMANALQRFGL 151 (233)
Q Consensus 137 ~~~~~~a~~l~~lg~ 151 (233)
.- +.+.++++..|.
T Consensus 112 ~~-~~~~~~~~~~~~ 125 (233)
T cd04723 112 PS-DDDEDRLAALGE 125 (233)
T ss_pred cc-hHHHHHHHhcCC
Confidence 66 888899999875
No 65
>PRK00162 glpE thiosulfate sulfurtransferase; Validated
Probab=27.52 E-value=1.5e+02 Score=21.49 Aligned_cols=84 Identities=14% Similarity=0.131 Sum_probs=42.5
Q ss_pred CCCHHHHHHHHHHcCeeeeecccccHHhhhhHHHHhhcCCCchhHHhhhccCCCC--CCeEEEeecChhhHHHHHHHHHH
Q 026769 71 DLDPEGVRRCVDEAGIGFMMSTKYHPAMKFVRPVRKKLKVKTVFNILGPMLNPAC--VPFAVVGVYNENLVLKMANALQR 148 (233)
Q Consensus 71 ~~~~~~a~~~L~~~gi~fl~~~~~~P~l~~l~~~R~~Lg~Rt~~Ntl~~LlNP~~--~~~~v~Gv~h~~~~~~~a~~l~~ 148 (233)
..+++++.+.+++.+..++++..- .-..-..+..-+-+ +...+...+++.. .+..++.. +.......+..|+.
T Consensus 6 ~is~~el~~~l~~~~~~ivDvR~~--~e~~~ghi~gA~~i--p~~~l~~~~~~~~~~~~ivv~c~-~g~~s~~a~~~L~~ 80 (108)
T PRK00162 6 CINVEQAHQKLQEGGAVLVDIRDP--QSFAMGHAPGAFHL--TNDSLGAFMRQADFDTPVMVMCY-HGNSSQGAAQYLLQ 80 (108)
T ss_pred ccCHHHHHHHHHcCCCEEEEcCCH--HHHhcCCCCCCeEC--CHHHHHHHHHhcCCCCCEEEEeC-CCCCHHHHHHHHHH
Confidence 467888888888777777777522 11111111111110 1122333333333 33444432 33344566777888
Q ss_pred cCCCeEEEEee
Q 026769 149 FGLKRALVVHS 159 (233)
Q Consensus 149 lg~~~~lvv~G 159 (233)
.|++++.++.|
T Consensus 81 ~G~~~v~~l~G 91 (108)
T PRK00162 81 QGFDVVYSIDG 91 (108)
T ss_pred CCchheEEecC
Confidence 88887666664
No 66
>PRK14033 citrate synthase; Provisional
Probab=27.22 E-value=1e+02 Score=28.74 Aligned_cols=20 Identities=15% Similarity=0.120 Sum_probs=17.2
Q ss_pred CCCcchHHHHHHHHcCCCcE
Q 026769 26 NTVNISTGASILAAACGAKV 45 (233)
Q Consensus 26 ~t~nist~aA~vlA~~G~~V 45 (233)
+.+|.||.++.++|+.|...
T Consensus 190 Hgln~StfaaRv~aSt~adl 209 (375)
T PRK14033 190 HSFNASTFTARVITSTLSDI 209 (375)
T ss_pred cCCCcHHHHHHHHhccCCCH
Confidence 36899999999999998765
No 67
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=26.76 E-value=83 Score=28.79 Aligned_cols=40 Identities=13% Similarity=0.144 Sum_probs=26.9
Q ss_pred chHHHHHHHHcCCCcEEeeCCCCC--------CCc-----chHHHHHHHcCCC
Q 026769 30 ISTGASILAAACGAKVAKQGSRSS--------SSA-----CGSADVLEALGVV 69 (233)
Q Consensus 30 ist~aA~vlA~~G~~V~~HG~~~~--------~~k-----~Gs~dvle~LGi~ 69 (233)
.-.++|+.|++.|++|...=.+.. .+| ..+.++|++||+-
T Consensus 15 ~Gl~~A~~L~~~G~~v~viE~~~~~~~~~~~~~~r~~~l~~~~~~~L~~lGl~ 67 (405)
T PRK08850 15 VGLALAAALKESDLRIAVIEGQLPEEALNELPDVRVSALSRSSEHILRNLGAW 67 (405)
T ss_pred HHHHHHHHHHhCCCEEEEEcCCCCcccccCCCCcceecccHHHHHHHHhCCch
Confidence 456788889999999986432210 011 1367899999984
No 68
>COG2313 IndA Uncharacterized enzyme involved in pigment biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=25.71 E-value=1.1e+02 Score=27.42 Aligned_cols=103 Identities=25% Similarity=0.275 Sum_probs=58.5
Q ss_pred ccCCCCCCCCcchHHHHHHHHcCCCcEEeeCCCC-C-CC---cch-HHHHHHH---------cCCCCCCCHHHHHHHHHH
Q 026769 19 GTGGDGANTVNISTGASILAAACGAKVAKQGSRS-S-SS---ACG-SADVLEA---------LGVVIDLDPEGVRRCVDE 83 (233)
Q Consensus 19 Gtg~Dg~~t~nist~aA~vlA~~G~~V~~HG~~~-~-~~---k~G-s~dvle~---------LGi~~~~~~~~a~~~L~~ 83 (233)
-.|.+|..|.- +..++++.+|++|+-.|+-+ + .+ ..- |+|+.|- -|+..-++....-+.||.
T Consensus 103 A~~~~gaTTVA---aTMi~A~~aGI~vfaTGGiGGVHrGAe~t~DISaDL~ELa~T~v~vV~AGaKsILDi~~TlE~LET 179 (310)
T COG2313 103 AEGKNGATTVA---ATMILAALAGIKVFATGGIGGVHRGAEHTFDISADLTELARTNVTVVCAGAKSILDIGLTLEVLET 179 (310)
T ss_pred hcCcCCcchHH---HHHHHHHHcCceEEEecCcccccCCcccccccchhHHHHhcCCeEEEecCchhhhccHHHHHHHHh
Confidence 34565655431 23366667799999988755 2 11 222 6776542 234445667777788888
Q ss_pred cCeeeee-------------------cccccHH-hhhhHHHHhhcCCCchhHHhhhccCCCCCCe
Q 026769 84 AGIGFMM-------------------STKYHPA-MKFVRPVRKKLKVKTVFNILGPMLNPACVPF 128 (233)
Q Consensus 84 ~gi~fl~-------------------~~~~~P~-l~~l~~~R~~Lg~Rt~~Ntl~~LlNP~~~~~ 128 (233)
.|+-.+. +....|+ ..++...|++||+---. -..||..-.+
T Consensus 180 ~gVPvvg~~t~~fPaF~sR~Sg~~~pl~l~~pe~ia~~~~t~~~lglegg~----lVaNPvPee~ 240 (310)
T COG2313 180 QGVPVVGYQTNEFPAFFSRESGFRVPLRLESPEEIARILATKWQLGLEGGL----LVANPVPEEF 240 (310)
T ss_pred cCcceeecCCCcccchhcccCCCcCccccCCHHHHHHHHHHHHHhCCCCce----EEecCCchhc
Confidence 8865442 2233343 45566666777665221 2568876554
No 69
>cd04732 HisA HisA. Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.
Probab=25.68 E-value=3.2e+02 Score=22.76 Aligned_cols=81 Identities=16% Similarity=0.289 Sum_probs=53.8
Q ss_pred CCCHHHHHHHHHHcCeeeeecccccH-------HhhhhHHHHhhc--------CCCchhHHhhhccCCCCCCeEEEeecC
Q 026769 71 DLDPEGVRRCVDEAGIGFMMSTKYHP-------AMKFVRPVRKKL--------KVKTVFNILGPMLNPACVPFAVVGVYN 135 (233)
Q Consensus 71 ~~~~~~a~~~L~~~gi~fl~~~~~~P-------~l~~l~~~R~~L--------g~Rt~~Ntl~~LlNP~~~~~~v~Gv~h 135 (233)
..++.+.++.+++.|+..++.-.... .+..+..+++.. |+|+ ...+.++++ .++...++|...
T Consensus 28 ~~dp~~~a~~~~~~g~d~l~v~dl~~~~~~~~~~~~~i~~i~~~~~~pv~~~GgI~~-~e~~~~~~~-~Gad~vvigs~~ 105 (234)
T cd04732 28 SDDPVEVAKKWEEAGAKWLHVVDLDGAKGGEPVNLELIEEIVKAVGIPVQVGGGIRS-LEDIERLLD-LGVSRVIIGTAA 105 (234)
T ss_pred CCCHHHHHHHHHHcCCCEEEEECCCccccCCCCCHHHHHHHHHhcCCCEEEeCCcCC-HHHHHHHHH-cCCCEEEECchH
Confidence 45788888889988876665542221 134566677665 4444 344666665 557788888887
Q ss_pred hhhHHHHHHHHHHcCCCe
Q 026769 136 ENLVLKMANALQRFGLKR 153 (233)
Q Consensus 136 ~~~~~~~a~~l~~lg~~~ 153 (233)
-.-.+.+.++.+..|.++
T Consensus 106 l~dp~~~~~i~~~~g~~~ 123 (234)
T cd04732 106 VKNPELVKELLKEYGGER 123 (234)
T ss_pred HhChHHHHHHHHHcCCce
Confidence 766777888888887643
No 70
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=25.61 E-value=81 Score=24.04 Aligned_cols=64 Identities=16% Similarity=0.004 Sum_probs=34.6
Q ss_pred eCCCCCCCcchHHHHHHHcCCCCCCCHHHHHHHHHHcCeeee-ecccccHHhhhhHHHHhhcCCCch
Q 026769 48 QGSRSSSSACGSADVLEALGVVIDLDPEGVRRCVDEAGIGFM-MSTKYHPAMKFVRPVRKKLKVKTV 113 (233)
Q Consensus 48 HG~~~~~~k~Gs~dvle~LGi~~~~~~~~a~~~L~~~gi~fl-~~~~~~P~l~~l~~~R~~Lg~Rt~ 113 (233)
||.+-+++-.=....|.++ .--.+...|-+.|+....--- ....|---++.|.+.|++||+.|+
T Consensus 34 ~~~DlVP~P~ii~aaLrAc--RRvND~alAVR~lE~vK~K~~~~~~~y~~~lqeikp~l~ELGI~t~ 98 (103)
T cd00923 34 FGYDLVPEPKVIEAALRAC--RRVNDFALAVRILEAIKDKCGAHKEIYPYILQEIKPTLKELGISTP 98 (103)
T ss_pred hccccCCCcHHHHHHHHHH--HHhhhHHHHHHHHHHHHHHccCchhhHHHHHHHHhHHHHHHCCCCH
Confidence 4444444433333334433 223455556666663221111 234454458999999999999885
No 71
>PRK01655 spxA transcriptional regulator Spx; Reviewed
Probab=25.54 E-value=65 Score=25.16 Aligned_cols=56 Identities=5% Similarity=0.055 Sum_probs=38.0
Q ss_pred CCCCCCCHHHHHHHHHHcCeeeeecc--cccHHhhhhHHHHhhc--CCCchhHHhhhccC
Q 026769 67 GVVIDLDPEGVRRCVDEAGIGFMMST--KYHPAMKFVRPVRKKL--KVKTVFNILGPMLN 122 (233)
Q Consensus 67 Gi~~~~~~~~a~~~L~~~gi~fl~~~--~~~P~l~~l~~~R~~L--g~Rt~~Ntl~~LlN 122 (233)
+.+-+.+-..|.+.|+++|+.|-... .-.|....|..+=+.+ |++.++|+=++..-
T Consensus 6 ~~~~C~~C~ka~~~L~~~gi~~~~idi~~~~~~~~eL~~~l~~~~~g~~~lin~~~~~~k 65 (131)
T PRK01655 6 TSPSCTSCRKAKAWLEEHDIPFTERNIFSSPLTIDEIKQILRMTEDGTDEIISTRSKVFQ 65 (131)
T ss_pred eCCCChHHHHHHHHHHHcCCCcEEeeccCChhhHHHHHHHHHHhcCCHHHHHhcCcHHHH
Confidence 34555666788899999998886554 4455567777777776 66677776665443
No 72
>PRK12350 citrate synthase 2; Provisional
Probab=25.18 E-value=2.1e+02 Score=26.51 Aligned_cols=82 Identities=26% Similarity=0.359 Sum_probs=43.4
Q ss_pred CCCcchHHHHHHHHcCCCcE---------EeeCCCCCCCcchHHHHHHHcCCCCCCCHHH-HHHHHHHc----Ceeeeec
Q 026769 26 NTVNISTGASILAAACGAKV---------AKQGSRSSSSACGSADVLEALGVVIDLDPEG-VRRCVDEA----GIGFMMS 91 (233)
Q Consensus 26 ~t~nist~aA~vlA~~G~~V---------~~HG~~~~~~k~Gs~dvle~LGi~~~~~~~~-a~~~L~~~----gi~fl~~ 91 (233)
+.+|.||.++.++|+.|... .+.|..--.......++|++.|=+ .+.++ +++.+++. ||+.=.-
T Consensus 168 Hg~naSTfaaRv~aSt~adlysav~agi~aL~GplHGGA~e~v~~ml~ei~~~--~~~~~~v~~~l~~~~ri~GFGHrvY 245 (353)
T PRK12350 168 HGMNASTFTARVIASTGADVAAALSGAIGALSGPLHGGAPARVLPMLDAVERT--GDARGWVKGALDRGERLMGFGHRVY 245 (353)
T ss_pred CCCCcchHHHHHHhccCCcHHHHHHHHHhhcCCCcccChHHHHHHHHHHhCCh--hhHHHHHHHHHHCCCccccCCCCCC
Confidence 37999999999999988765 222222211223355677777631 12222 44444432 3332212
Q ss_pred ccccHHhhhhHHHHhhcC
Q 026769 92 TKYHPAMKFVRPVRKKLK 109 (233)
Q Consensus 92 ~~~~P~l~~l~~~R~~Lg 109 (233)
+..-|=...|..+=++++
T Consensus 246 k~~DPRa~~L~~~~~~l~ 263 (353)
T PRK12350 246 RAEDPRARVLRATAKRLG 263 (353)
T ss_pred CCCCCCHHHHHHHHHHhC
Confidence 334555556666655654
No 73
>TIGR02023 BchP-ChlP geranylgeranyl reductase. This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).
Probab=24.70 E-value=1e+02 Score=28.11 Aligned_cols=40 Identities=18% Similarity=0.239 Sum_probs=25.9
Q ss_pred chHHHHHHHHcCCCcEEeeCCC-CCCCcch---HHHHHHHcCCC
Q 026769 30 ISTGASILAAACGAKVAKQGSR-SSSSACG---SADVLEALGVV 69 (233)
Q Consensus 30 ist~aA~vlA~~G~~V~~HG~~-~~~~k~G---s~dvle~LGi~ 69 (233)
.-.++|+.||+.|++|+.-=-+ .....+| +..+|+.||++
T Consensus 11 AG~~aA~~La~~G~~V~l~E~~~~~~~~cg~~i~~~~l~~l~i~ 54 (388)
T TIGR02023 11 SGATAAETLARAGIETILLERALSNIKPCGGAIPPCLIEEFDIP 54 (388)
T ss_pred HHHHHHHHHHhCCCcEEEEECCCCCcCcCcCCcCHhhhhhcCCc
Confidence 4456889999999999852211 2222233 56788888875
No 74
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=24.02 E-value=2.5e+02 Score=23.81 Aligned_cols=76 Identities=14% Similarity=0.159 Sum_probs=50.3
Q ss_pred HHHHHHHcCCCc-EEeeCCCCCCCcch-----HHHHHHHcCCCCC-----CCHHHHHHHHHHcCe-eeeecccccHHhhh
Q 026769 33 GASILAAACGAK-VAKQGSRSSSSACG-----SADVLEALGVVID-----LDPEGVRRCVDEAGI-GFMMSTKYHPAMKF 100 (233)
Q Consensus 33 ~aA~vlA~~G~~-V~~HG~~~~~~k~G-----s~dvle~LGi~~~-----~~~~~a~~~L~~~gi-~fl~~~~~~P~l~~ 100 (233)
-.+..+...|+. +..|+-....++.| ...+.+..++|+- .+++++.++++..|+ +.+-...++..-..
T Consensus 153 ~~~~~l~~~G~d~i~v~~i~~~g~~~g~~~~~i~~i~~~~~~pvia~GGi~~~~di~~~l~~~g~dgv~vg~al~~~~~~ 232 (243)
T cd04731 153 EWAKEVEELGAGEILLTSMDRDGTKKGYDLELIRAVSSAVNIPVIASGGAGKPEHFVEAFEEGGADAALAASIFHFGEYT 232 (243)
T ss_pred HHHHHHHHCCCCEEEEeccCCCCCCCCCCHHHHHHHHhhCCCCEEEeCCCCCHHHHHHHHHhCCCCEEEEeHHHHcCCCC
Confidence 355667788987 77888544333333 4566666677763 578999999999888 56666666665445
Q ss_pred hHHHHhhc
Q 026769 101 VRPVRKKL 108 (233)
Q Consensus 101 l~~~R~~L 108 (233)
+..+++.+
T Consensus 233 ~~~~~~~~ 240 (243)
T cd04731 233 IAELKEYL 240 (243)
T ss_pred HHHHHHHH
Confidence 66655544
No 75
>TIGR01617 arsC_related transcriptional regulator, Spx/MgsR family. This model represents a portion of the proteins within the larger set covered by Pfam model pfam03960. That larger family includes a glutaredoxin-dependent arsenate reductase (TIGR00014). Characterized members of this family include Spx and MgsR from Bacillus subtili. Spx is a global regulator for response to thiol-specific oxidative stress. It interacts with RNA polymerase. MgsR (modulator of the general stress response, also called YqgZ) provides a second level of regulation for more than a third of the proteins in the B. subtilis general stress regulon controlled by Sigma-B.
Probab=23.96 E-value=82 Score=23.83 Aligned_cols=56 Identities=16% Similarity=0.198 Sum_probs=38.3
Q ss_pred CCCCCCCHHHHHHHHHHcCeeeeecccc--cHHhhhhHHHHhhcC--CCchhHHhhhccC
Q 026769 67 GVVIDLDPEGVRRCVDEAGIGFMMSTKY--HPAMKFVRPVRKKLK--VKTVFNILGPMLN 122 (233)
Q Consensus 67 Gi~~~~~~~~a~~~L~~~gi~fl~~~~~--~P~l~~l~~~R~~Lg--~Rt~~Ntl~~LlN 122 (233)
+.+.+.+-..|.+.|+++|+.|-..... .+....+..+-+.+| +..++|+=++...
T Consensus 5 ~~~~C~~c~ka~~~L~~~~i~~~~idi~~~~~~~~el~~l~~~~~~~~~~lin~~~~~~k 64 (117)
T TIGR01617 5 GSPNCTTCKKARRWLEANGIEYQFIDIGEDGPTREELLDILSLLEDGIDPLLNTRGQSYR 64 (117)
T ss_pred eCCCCHHHHHHHHHHHHcCCceEEEecCCChhhHHHHHHHHHHcCCCHHHheeCCCcchh
Confidence 3455666778899999999888766644 355667777777777 5666666555433
No 76
>cd06108 Ec2MCS_like Escherichia coli (Ec) 2-methylcitrate synthase (2MCS)_like. 2MCS catalyzes the condensation of propionyl-coenzyme A (PrCoA) and oxalacetate (OAA) to form 2-methylcitrate and coenzyme A (CoA) during propionate metabolism. Citrate synthase (CS) catalyzes the condensation of acetyl coenzyme A (AcCoA) and OAA to form citrate and coenzyme A (CoA), the first step in the citric acid cycle (TCA or Krebs cycle). This group contains proteins similar to the E. coli 2MCS, EcPrpC. EcPrpC is one of two CS isozymes in the gram-negative E. coli. EcPrpC is a dimeric (type I ) CS; it is induced during growth on propionate and prefers PrCoA as a substrate though it has partial CS activity with AcCoA. This group also includes Salmonella typhimurium PrpC and Ralstonia eutropha (Re) 2-MCS1 which are also induced during growth on propionate and prefer PrCoA as substrate, but can also use AcCoA. Re 2-MCS1 can use butyryl-CoA and valeryl-CoA at a lower rate. A second Ralstonia eutropha 2MC
Probab=23.91 E-value=1.4e+02 Score=27.78 Aligned_cols=19 Identities=26% Similarity=0.113 Sum_probs=16.6
Q ss_pred CCcchHHHHHHHHcCCCcE
Q 026769 27 TVNISTGASILAAACGAKV 45 (233)
Q Consensus 27 t~nist~aA~vlA~~G~~V 45 (233)
.+|.||.++.++|+.|...
T Consensus 179 ~~n~St~aaRv~aSt~ad~ 197 (363)
T cd06108 179 EFNASTFAARVTASTLSDF 197 (363)
T ss_pred CCcchHHHHHHHhccCCCH
Confidence 5899999999999988765
No 77
>PRK09432 metF 5,10-methylenetetrahydrofolate reductase; Provisional
Probab=23.82 E-value=1.7e+02 Score=26.30 Aligned_cols=46 Identities=7% Similarity=0.197 Sum_probs=28.4
Q ss_pred HHHHhhcCCCchhHHhhhccCCCCCCeEEEeecChhhHHHHHHHHHHcCCCeEEEEeeC
Q 026769 102 RPVRKKLKVKTVFNILGPMLNPACVPFAVVGVYNENLVLKMANALQRFGLKRALVVHSE 160 (233)
Q Consensus 102 ~~~R~~Lg~Rt~~Ntl~~LlNP~~~~~~v~Gv~h~~~~~~~a~~l~~lg~~~~lvv~Ge 160 (233)
..++++.|++++.|...+ +. ++.-.+.+..-+..+|.++.++++||
T Consensus 75 ~~i~~~~g~~~i~Hltcr------------~~-n~~~l~~~L~~~~~~GI~niLaLrGD 120 (296)
T PRK09432 75 KGIKKRTGLEAAPHLTCI------------DA-TPDELRTIAKDYWNNGIRHIVALRGD 120 (296)
T ss_pred HHHHHHhCCCeeeecccC------------CC-CHHHHHHHHHHHHHCCCCEEEEeCCC
Confidence 345667777777665433 32 23333344444578899999999984
No 78
>PRK13586 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=23.62 E-value=3.9e+02 Score=23.00 Aligned_cols=80 Identities=10% Similarity=0.117 Sum_probs=53.9
Q ss_pred CCHHHHHHHHHHcCeeeeeccccc------HHhhhhHHHHh-hc-------CCCchhHHhhhccCCCCCCeEEEeecChh
Q 026769 72 LDPEGVRRCVDEAGIGFMMSTKYH------PAMKFVRPVRK-KL-------KVKTVFNILGPMLNPACVPFAVVGVYNEN 137 (233)
Q Consensus 72 ~~~~~a~~~L~~~gi~fl~~~~~~------P~l~~l~~~R~-~L-------g~Rt~~Ntl~~LlNP~~~~~~v~Gv~h~~ 137 (233)
.+|.+.++.+.+.|+-.++.-.+. +....+..+.+ .. |+||.=.. ..+++ ..+.+.++|..--.
T Consensus 30 ~dP~~~a~~~~~~ga~~lhivDLd~a~~~~~n~~~i~~i~~~~~~~v~vGGGIrs~e~~-~~~l~-~Ga~kvvigt~a~~ 107 (232)
T PRK13586 30 GNPIEIASKLYNEGYTRIHVVDLDAAEGVGNNEMYIKEISKIGFDWIQVGGGIRDIEKA-KRLLS-LDVNALVFSTIVFT 107 (232)
T ss_pred CCHHHHHHHHHHCCCCEEEEEECCCcCCCcchHHHHHHHHhhCCCCEEEeCCcCCHHHH-HHHHH-CCCCEEEECchhhC
Confidence 478889999999887666554432 33455666666 23 88886544 55555 46778888876656
Q ss_pred hHHHHHHHHHHcCCCe
Q 026769 138 LVLKMANALQRFGLKR 153 (233)
Q Consensus 138 ~~~~~a~~l~~lg~~~ 153 (233)
-.+.+.++.+..|.++
T Consensus 108 ~p~~~~~~~~~~g~~~ 123 (232)
T PRK13586 108 NFNLFHDIVREIGSNR 123 (232)
T ss_pred CHHHHHHHHHHhCCCC
Confidence 6677778888887544
No 79
>cd00537 MTHFR Methylenetetrahydrofolate reductase (MTHFR). 5,10-Methylenetetrahydrofolate is reduced to 5-methyltetrahydrofolate by methylenetetrahydrofolate reductase, a cytoplasmic, NAD(P)-dependent enzyme. 5-methyltetrahydrofolate is utilized by methionine synthase to convert homocysteine to methionine. The enzymatic mechanism is a ping-pong bi-bi mechanism, in which NAD(P)+ release precedes the binding of methylenetetrahydrofolate and the acceptor is free FAD. The family includes the 5,10-methylenetetrahydrofolate reductase EC:1.7.99.5 from prokaryotes and methylenetetrahydrofolate reductase EC: 1.5.1.20 from eukaryotes. The bacterial enzyme is a homotetramer and NADH is the preferred reductant while the eukaryotic enzyme is a homodimer and NADPH is the preferred reductant. In humans, there are several clinically significant mutations in MTHFR that result in hyperhomocysteinemia, which is a risk factor for the development of cardiovascular disease.
Probab=23.46 E-value=2.2e+02 Score=24.82 Aligned_cols=73 Identities=10% Similarity=0.109 Sum_probs=41.5
Q ss_pred HHHHHHHHHcCeeeeecccc------cHHhhhhHHHHhhcCCCchhHHhhhccCCCCCCeEEEeecChhhHHHHHHHHHH
Q 026769 75 EGVRRCVDEAGIGFMMSTKY------HPAMKFVRPVRKKLKVKTVFNILGPMLNPACVPFAVVGVYNENLVLKMANALQR 148 (233)
Q Consensus 75 ~~a~~~L~~~gi~fl~~~~~------~P~l~~l~~~R~~Lg~Rt~~Ntl~~LlNP~~~~~~v~Gv~h~~~~~~~a~~l~~ 148 (233)
+++.+.++..+..|+....- ...+.....++++.|++++.|...+=.| ...+ +.....+..
T Consensus 18 ~~~~~~~~~~~~d~v~Vt~~~~g~~~~~t~~~a~~l~~~~g~~~i~Hlt~r~~n------------~~~l-~~~L~~~~~ 84 (274)
T cd00537 18 EAAADLLGALDPDFVSVTDGAGGSTRDMTLLAAARILQEGGIEPIPHLTCRDRN------------RIEL-QSILLGAHA 84 (274)
T ss_pred HHHHHHhhcCCCCEEEeCCCCCCchhhhHHHHHHHHHHhcCCCeeeecccCCCC------------HHHH-HHHHHHHHH
Confidence 44555555555556555432 2233444556667677776665544222 2233 333444577
Q ss_pred cCCCeEEEEeeC
Q 026769 149 FGLKRALVVHSE 160 (233)
Q Consensus 149 lg~~~~lvv~Ge 160 (233)
+|.++.++++|+
T Consensus 85 ~Gi~~iL~l~GD 96 (274)
T cd00537 85 LGIRNILALRGD 96 (274)
T ss_pred CCCCeEEEeCCC
Confidence 799999999994
No 80
>PF01364 Peptidase_C25: Peptidase family C25 This family belongs to family C25 of the peptidase classification.; InterPro: IPR001769 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Cysteine peptidases have characteristic molecular topologies, which can be seen not only in their three-dimensional structures, but commonly also in the two-dimensional structures. These are peptidases in which the nucleophile is the sulphydryl group of a cysteine residue. Cysteine proteases are divided into clans (proteins which are evolutionary related), and further sub-divided into families, on the basis of the architecture of their catalytic dyad or triad []. This group of cysteine peptidases belong to MEROPS peptidase family C25 (gingipain, clan CD). The protein fold of the peptidase domain for members of this entry resembles that of caspase 1, the type example for clan CD. This is a protein family found only in the bacteria. Porphyromonas gingivalis (Bacteroides gingivalis) a Gram-negative anaerobic bacterial species strongly associated with adult periodontitis. One of its distinguishing characteristics and putative virulence properties is the ability to agglutinate erythrocytes []. It is a highly proteolytic organism which metabolises small peptides and amino acids. Indirect evidence suggests that the proteases produced by this microorganism constitute an important virulence factor []. Protease-encoding genes have been shown to contain multiple copies of repeated nucleotide sequences. These conserved sequences have also been found in haemagglutinin genes [].; GO: 0008234 cysteine-type peptidase activity, 0006508 proteolysis; PDB: 1CVR_A.
Probab=23.29 E-value=1.3e+02 Score=27.46 Aligned_cols=69 Identities=9% Similarity=0.080 Sum_probs=44.6
Q ss_pred eecccccHHhhhhHHHHhhcCCCchhHHhhhccCCCCCCeEEEeecChhhHHHHHHHHHHcC---CCeEEEEeeCCc
Q 026769 89 MMSTKYHPAMKFVRPVRKKLKVKTVFNILGPMLNPACVPFAVVGVYNENLVLKMANALQRFG---LKRALVVHSEGL 162 (233)
Q Consensus 89 l~~~~~~P~l~~l~~~R~~Lg~Rt~~Ntl~~LlNP~~~~~~v~Gv~h~~~~~~~a~~l~~lg---~~~~lvv~GeG~ 162 (233)
+.-+.|.++++++..+|++.|+++.+-+++.+-|-+. -|..++.-...+.+-+-... .-+-+++=|++.
T Consensus 4 It~~~~~~~~~~la~~r~~~G~~~~vv~v~~I~~~f~-----~G~~~~~aIR~fi~~~y~~~~~~~~~yvlLvGd~~ 75 (378)
T PF01364_consen 4 ITPPEFMDAAQRLAEWRRSQGYKVLVVTVEDIYNEFS-----YGIPDPTAIRNFIRYAYDNWSPPKPRYVLLVGDAS 75 (378)
T ss_dssp EE-GGGGGG-HHHHHHHHHTT-EEEEEEHHHH-SS------------HHHHHHHHHHHHHST----EEEEEEES-T-
T ss_pred EECHHHHHHHHHHHHHHHHcCCcEEEEEHHHhhhhhh-----hccccHHHHHHHHHHHHHhcccCCCcEEEEEcccc
Confidence 4567889999999999999999999999999998876 66677777777766666655 235577778763
No 81
>PRK00994 F420-dependent methylenetetrahydromethanopterin dehydrogenase; Provisional
Probab=23.02 E-value=1.3e+02 Score=26.67 Aligned_cols=63 Identities=14% Similarity=0.302 Sum_probs=46.3
Q ss_pred CCCcEEeeCCCCCCCcchHHHHHHHcCCCC----CCCHHHHHHHHHHcCeeeeecccccHHhhhhHHHHhhc
Q 026769 41 CGAKVAKQGSRSSSSACGSADVLEALGVVI----DLDPEGVRRCVDEAGIGFMMSTKYHPAMKFVRPVRKKL 108 (233)
Q Consensus 41 ~G~~V~~HG~~~~~~k~Gs~dvle~LGi~~----~~~~~~a~~~L~~~gi~fl~~~~~~P~l~~l~~~R~~L 108 (233)
-.+.|+.-=|.+.++-....++|.+-|+|. +..-....+.|++.||+|+-.+. +.++.-|+++
T Consensus 61 pDf~i~isPN~a~PGP~~ARE~l~~~~iP~IvI~D~p~~K~~d~l~~~g~GYIivk~-----DpMIGArREF 127 (277)
T PRK00994 61 PDFVIVISPNPAAPGPKKAREILKAAGIPCIVIGDAPGKKVKDAMEEQGLGYIIVKA-----DPMIGARREF 127 (277)
T ss_pred CCEEEEECCCCCCCCchHHHHHHHhcCCCEEEEcCCCccchHHHHHhcCCcEEEEec-----Cccccchhhc
Confidence 356666666777888888999999999864 33445577999999999998764 3455555543
No 82
>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors. RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.
Probab=22.99 E-value=76 Score=25.47 Aligned_cols=33 Identities=6% Similarity=0.029 Sum_probs=25.1
Q ss_pred HHcCCCCCCCHHHHHHHHHHcCeeeeecccccH
Q 026769 64 EALGVVIDLDPEGVRRCVDEAGIGFMMSTKYHP 96 (233)
Q Consensus 64 e~LGi~~~~~~~~a~~~L~~~gi~fl~~~~~~P 96 (233)
+-++|..+.+.+++++.+++.++.|++.|...+
T Consensus 67 ~vV~Vs~D~~~~~~~~f~~~~~~~~~~~p~~~~ 99 (146)
T cd03008 67 ALVYVSMDQSEQQQESFLKDMPKKWLFLPFEDE 99 (146)
T ss_pred EEEEEECCCCHHHHHHHHHHCCCCceeecccch
Confidence 335677778888899999999988877665543
No 83
>TIGR01356 aroA 3-phosphoshikimate 1-carboxyvinyltransferase. Sequences scoring between the trusted and noise cutoffs include fragmentary and aberrant sequences in which generally well-conserved motifs are missing or altererd, but no example of a protein known to have a different function.
Probab=22.80 E-value=1.6e+02 Score=27.07 Aligned_cols=120 Identities=18% Similarity=0.239 Sum_probs=60.1
Q ss_pred ceeEeccC-CCCCC-CC--cchHHHHHHHHcC--CCcEEeeCCCCCCCcch--HHHHHHHcCCCCCCCHHHHHHHHHHcC
Q 026769 14 AVDIVGTG-GDGAN-TV--NISTGASILAAAC--GAKVAKQGSRSSSSACG--SADVLEALGVVIDLDPEGVRRCVDEAG 85 (233)
Q Consensus 14 ~~di~Gtg-~Dg~~-t~--nist~aA~vlA~~--G~~V~~HG~~~~~~k~G--s~dvle~LGi~~~~~~~~a~~~L~~~g 85 (233)
.+.|-|.+ +-+.. ++ ..|.++-+++|+. |-.+..+|....+.+.. ..++|+++|+.+.... .+
T Consensus 204 ~i~I~g~~~l~~~~~~i~~D~ssa~~ll~aa~l~~g~i~i~~~~~~~~~~~~~~~~~L~~~Ga~i~~~~---------~~ 274 (409)
T TIGR01356 204 KIVVPGGQKYGPQGYDVPGDYSSAAFFLAAAAITGGRVTLENLGINPTQGDKAIIIVLEEMGADIEVEE---------DD 274 (409)
T ss_pred EEEECCCCccCCCeeECCCCHHHHHHHHHHHHhcCCEEEECCCCCCCCCCcHHHHHHHHHcCCeEEEeC---------Ce
Confidence 45555422 43333 33 3555544444442 22788887654444444 3779999999875321 13
Q ss_pred eeeeecccccHHhhhhHHHHhhcCCCc-h---hHHhhhccCCCCCCeEEEeecChhh-----HHHHHHHHHHcCCC
Q 026769 86 IGFMMSTKYHPAMKFVRPVRKKLKVKT-V---FNILGPMLNPACVPFAVVGVYNENL-----VLKMANALQRFGLK 152 (233)
Q Consensus 86 i~fl~~~~~~P~l~~l~~~R~~Lg~Rt-~---~Ntl~~LlNP~~~~~~v~Gv~h~~~-----~~~~a~~l~~lg~~ 152 (233)
|..-..+.+.|. . + .+.-.+ . +-.++-+ ++....+.|+.|-.+ ...+.+.|+.+|.+
T Consensus 275 i~v~~~~~l~~~-~-~-----~~~d~~d~~~~l~~~aa~---a~g~~~i~~~~~~~~~e~dr~~~~~~~L~~~G~~ 340 (409)
T TIGR01356 275 LIVEGASGLKGI-K-I-----DMDDMIDELPTLAVLAAF---AEGVTRITGAEELRVKESDRIAAIAEELRKLGVD 340 (409)
T ss_pred EEEEecCCCccE-E-E-----ECCCChhHHHHHHHHHHh---CCCCEEEEChhHhhhcccHHHHHHHHHHHHcCCE
Confidence 332211222211 0 0 111111 1 1112211 345788999988433 24578889999974
No 84
>KOG3040 consensus Predicted sugar phosphatase (HAD superfamily) [General function prediction only]
Probab=22.79 E-value=3.1e+02 Score=24.00 Aligned_cols=74 Identities=15% Similarity=0.087 Sum_probs=52.3
Q ss_pred CceeEeccCCCCCC-CCcchHHHHHHHHcCCCcEEeeCCCCCCCcchHHHHHHHcCCCCC-----CCHHHHHHHHHHcCe
Q 026769 13 DAVDIVGTGGDGAN-TVNISTGASILAAACGAKVAKQGSRSSSSACGSADVLEALGVVID-----LDPEGVRRCVDEAGI 86 (233)
Q Consensus 13 ~~~di~Gtg~Dg~~-t~nist~aA~vlA~~G~~V~~HG~~~~~~k~Gs~dvle~LGi~~~-----~~~~~a~~~L~~~gi 86 (233)
-.+|+.||=|+--- ..+.-.+.. .|-..+++|----|..-.||.-..+=|..||+++. .+...|.+.+++++.
T Consensus 10 vLlDlSGtLh~e~~avpga~eAl~-rLr~~~~kVkFvTNttk~Sk~~l~~rL~rlgf~v~eeei~tsl~aa~~~~~~~~l 88 (262)
T KOG3040|consen 10 VLLDLSGTLHIEDAAVPGAVEALK-RLRDQHVKVKFVTNTTKESKRNLHERLQRLGFDVSEEEIFTSLPAARQYLEENQL 88 (262)
T ss_pred EEEeccceEecccccCCCHHHHHH-HHHhcCceEEEEecCcchhHHHHHHHHHHhCCCccHHHhcCccHHHHHHHHhcCC
Confidence 36899999887665 555544444 44556677766677777778788888999999764 455667788887765
Q ss_pred e
Q 026769 87 G 87 (233)
Q Consensus 87 ~ 87 (233)
-
T Consensus 89 r 89 (262)
T KOG3040|consen 89 R 89 (262)
T ss_pred C
Confidence 3
No 85
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=22.71 E-value=3.9e+02 Score=23.57 Aligned_cols=57 Identities=19% Similarity=0.416 Sum_probs=38.5
Q ss_pred HHHHhhcCCCchhHHhhhccCCCCCCeEEEeecChhhH---HHHHHHHHHcCCCeEEEEee
Q 026769 102 RPVRKKLKVKTVFNILGPMLNPACVPFAVVGVYNENLV---LKMANALQRFGLKRALVVHS 159 (233)
Q Consensus 102 ~~~R~~Lg~Rt~~Ntl~~LlNP~~~~~~v~Gv~h~~~~---~~~a~~l~~lg~~~~lvv~G 159 (233)
..++.-+.++..|..+..+-.-...+..+++|++|=|. +.+.+-++..|.+ .+++..
T Consensus 68 rAL~~g~~~~~~~~~~~~~r~~~~~p~vlm~Y~N~i~~~G~e~F~~~~~~aGvd-gviipD 127 (263)
T CHL00200 68 RALKQGINLNKILSILSEVNGEIKAPIVIFTYYNPVLHYGINKFIKKISQAGVK-GLIIPD 127 (263)
T ss_pred HHHHcCCCHHHHHHHHHHHhcCCCCCEEEEecccHHHHhCHHHHHHHHHHcCCe-EEEecC
Confidence 33455556667777777765434446679999998666 6677777888884 666665
No 86
>cd01555 UdpNAET UDP-N-acetylglucosamine enolpyruvyl transferase catalyzes enolpyruvyl transfer as part of the first step in the biosynthesis of peptidoglycan, a component of the bacterial cell wall. The reaction is phosphoenolpyruvate + UDP-N-acetyl-D-glucosamine = phosphate + UDP-N-acetyl-3-(1-carboxyvinyl)-D-glucosamine. This enzyme is of interest as a potential target for anti-bacterial agents. The only other known enolpyruvyl transferase is the related 5-enolpyruvylshikimate-3-phosphate synthase.
Probab=22.68 E-value=57 Score=29.84 Aligned_cols=96 Identities=22% Similarity=0.230 Sum_probs=51.1
Q ss_pred CCCcEEeeCCCCCCCc--chHHHHHHHcCCCCCCCHHHHHHHHHHcCeeeeecccccHHhhhhHHHHhhcCCCchhHHhh
Q 026769 41 CGAKVAKQGSRSSSSA--CGSADVLEALGVVIDLDPEGVRRCVDEAGIGFMMSTKYHPAMKFVRPVRKKLKVKTVFNILG 118 (233)
Q Consensus 41 ~G~~V~~HG~~~~~~k--~Gs~dvle~LGi~~~~~~~~a~~~L~~~gi~fl~~~~~~P~l~~l~~~R~~Lg~Rt~~Ntl~ 118 (233)
.++.+..+|...+.++ ....++|+++|+.+..+. + +++.. .+ ..+.+..-.+-..+...+..
T Consensus 96 ~~~~~~~~g~~~l~~rp~~~~~~~L~~lG~~i~~~~----------~--~~~v~--~~--~~~~~~~~~i~~~~~~~~~~ 159 (400)
T cd01555 96 GEARVSLPGGCAIGARPVDLHLKGLEALGAKIEIED----------G--YVEAK--AA--GRLKGARIYLDFPSVGATEN 159 (400)
T ss_pred CceEEEEcCCCccccCCHHHHHHHHHHCCCEEEEeC----------C--EEEEe--cC--CCccceEEECCCCCHHHHHH
Confidence 3478888897665544 237899999999874321 1 11111 01 01111111222222222211
Q ss_pred hccC-C-CCCCeEEEeecChhhHHHHHHHHHHcCCC
Q 026769 119 PMLN-P-ACVPFAVVGVYNENLVLKMANALQRFGLK 152 (233)
Q Consensus 119 ~LlN-P-~~~~~~v~Gv~h~~~~~~~a~~l~~lg~~ 152 (233)
-|+- + +.....+.+..+.++...+.+.|+.+|.+
T Consensus 160 ll~aa~~~~g~~~i~~~~~~~~i~~~~~~L~~~G~~ 195 (400)
T cd01555 160 IMMAAVLAEGTTVIENAAREPEIVDLANFLNKMGAK 195 (400)
T ss_pred HHHHHHhCCCeEEEecccCCccHHHHHHHHHHCCCE
Confidence 1111 1 12346677777777888899999999974
No 87
>cd06115 AthCS_per_like Arabidopsis thaliana (Ath) peroxisomal (Per) CS_like. CS catalyzes the condensation of acetyl coenzyme A (AcCoA) and oxalacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the citric acid cycle (TCA or Krebs cycle). The overall CS reaction is thought to proceed through three partial reactions and involves both closed and open conformational forms of the enzyme: a) the carbanion or equivalent is generated from AcCoA by base abstraction of a proton, b) the nucleophilic attack of this carbanion on OAA to generate citryl-CoA, and c) the hydrolysis of citryl-CoA to produce citrate and CoA. This group contains three Arabidopsis peroxisomal CS proteins, CYS1, -2, and -3 which are involved in the glyoxylate cycle. AthCYS1, in addition to a peroxisomal targeting sequence, has a predicted secretory signal peptide; it may be targeted to both the secretory pathway and the peroxisomes and is thought to be located in the extracellular matrix. AthCSY1 is expr
Probab=22.62 E-value=1.4e+02 Score=28.20 Aligned_cols=19 Identities=37% Similarity=0.344 Sum_probs=16.2
Q ss_pred CCcchHHHHHHHHcCCCcE
Q 026769 27 TVNISTGASILAAACGAKV 45 (233)
Q Consensus 27 t~nist~aA~vlA~~G~~V 45 (233)
.+|.||.++.++|+.|...
T Consensus 220 ~~naSTfaarv~aSt~ad~ 238 (410)
T cd06115 220 EMNCSTAAVRHLASSGVDV 238 (410)
T ss_pred CCCchHHHHHHHHhcCCCH
Confidence 5899999999999987654
No 88
>cd06112 citrate_synt_like_1_1 Citrate synthase (CS) catalyzes the condensation of acetyl coenzyme A (AcCoA) and oxalacetate (OAA) to form citrate and coenzyme A (CoA), the first step in the oxidative citric acid cycle (TCA or Krebs cycle). Peroxisomal CS is involved in the glyoxylate cycle. This group also includes CS proteins which functions as a 2-methylcitrate synthase (2MCS). 2MCS catalyzes the condensation of propionyl-CoA (PrCoA) and OAA to form 2-methylcitrate and CoA during propionate metabolism. This group contains proteins which functions exclusively as either a CS or a 2MCS, as well as those with relaxed specificity which have dual functions as both a CS and a 2MCS. The overall CS reaction is thought to proceed through three partial reactions and involves both closed and open conformational forms of the enzyme: a) the carbanion or equivalent is generated from AcCoA by base abstraction of a proton, b) the nucleophilic attack of this carbanion on OAA to generate citryl-CoA, an
Probab=22.22 E-value=2.8e+02 Score=25.78 Aligned_cols=78 Identities=21% Similarity=0.328 Sum_probs=41.4
Q ss_pred CCcchHHHHHHHHcCCCcE---------EeeCCCCCCCcchHHHHHHHcCCCCCCCHHHHHHHH----HHc----Ceeee
Q 026769 27 TVNISTGASILAAACGAKV---------AKQGSRSSSSACGSADVLEALGVVIDLDPEGVRRCV----DEA----GIGFM 89 (233)
Q Consensus 27 t~nist~aA~vlA~~G~~V---------~~HG~~~~~~k~Gs~dvle~LGi~~~~~~~~a~~~L----~~~----gi~fl 89 (233)
.+|.||.++.++|+.+... ++.|..--.......++|++.+ +++++++.+ ++. ||+.=
T Consensus 185 g~n~STfaaRvvaSt~ad~~s~~~aai~al~GplHGGA~e~~~~~l~~i~-----~~~~~~~~v~~~l~~~~~i~GfGH~ 259 (373)
T cd06112 185 TMNASTFSALVTGSTLADPYAVISSAIGTLSGPLHGGANEDVLEMLEEIG-----SPENVKAYLDKKLANKQKIWGFGHR 259 (373)
T ss_pred CCCchHHHHHHHHhcCCcHHHHHHHHHHhccCccccchHHHHHHHHHHhC-----CHHHHHHHHHHHHhcCCeeeCCCCc
Confidence 6999999999999876443 1222211111222456677665 345555444 332 44433
Q ss_pred ecccccHHhhhhHHHHhhcC
Q 026769 90 MSTKYHPAMKFVRPVRKKLK 109 (233)
Q Consensus 90 ~~~~~~P~l~~l~~~R~~Lg 109 (233)
.-+..-|=...|..+=++++
T Consensus 260 vyk~~DPRa~~L~~~~~~l~ 279 (373)
T cd06112 260 VYKTKDPRATILQKLAEDLF 279 (373)
T ss_pred cCCCCCcHHHHHHHHHHHHH
Confidence 33444565555555544553
No 89
>PRK13344 spxA transcriptional regulator Spx; Reviewed
Probab=21.56 E-value=66 Score=25.25 Aligned_cols=56 Identities=2% Similarity=-0.005 Sum_probs=38.9
Q ss_pred CCCCCCCHHHHHHHHHHcCeeeeecccc--cHHhhhhHHHHhhcC--CCchhHHhhhccC
Q 026769 67 GVVIDLDPEGVRRCVDEAGIGFMMSTKY--HPAMKFVRPVRKKLK--VKTVFNILGPMLN 122 (233)
Q Consensus 67 Gi~~~~~~~~a~~~L~~~gi~fl~~~~~--~P~l~~l~~~R~~Lg--~Rt~~Ntl~~LlN 122 (233)
|.+-+.+-..|.+.|+++|+.|-..... -|....|..+=+.+| ++.++|+=+....
T Consensus 6 ~~~~C~~crkA~~~L~~~~i~~~~~d~~~~~~s~~eL~~~l~~~~~~~~~lin~~~~~~k 65 (132)
T PRK13344 6 TISSCTSCKKAKTWLNAHQLSYKEQNLGKEPLTKEEILAILTKTENGIESIVSSKNRYAK 65 (132)
T ss_pred eCCCCHHHHHHHHHHHHcCCCeEEEECCCCCCCHHHHHHHHHHhCCCHHHhhccCcHHHH
Confidence 4566677788999999999888766543 555666777666654 6777777665443
No 90
>PRK00341 hypothetical protein; Provisional
Probab=21.50 E-value=1.4e+02 Score=21.97 Aligned_cols=32 Identities=22% Similarity=0.354 Sum_probs=27.1
Q ss_pred hhccC-CC-CCCeEEEeecChhhHHHHHHHHHHc
Q 026769 118 GPMLN-PA-CVPFAVVGVYNENLVLKMANALQRF 149 (233)
Q Consensus 118 ~~LlN-P~-~~~~~v~Gv~h~~~~~~~a~~l~~l 149 (233)
.+++. |+ +-++.|+|..++++.+.+.++++.-
T Consensus 8 ~~~ieFPc~~~~~KViG~~~~~~~~~V~~iv~~~ 41 (91)
T PRK00341 8 SPKIEFPCEDYPIKVIGDTGVGFKDLVIEILQKH 41 (91)
T ss_pred CcccCCCCCCccEEEEEcCchhHHHHHHHHHHHh
Confidence 35666 88 6999999999999999999999743
No 91
>PRK05868 hypothetical protein; Validated
Probab=21.48 E-value=1.8e+02 Score=26.39 Aligned_cols=40 Identities=23% Similarity=0.256 Sum_probs=26.3
Q ss_pred chHHHHHHHHcCCCcEEeeCCCCCCCc--------chHHHHHHHcCCC
Q 026769 30 ISTGASILAAACGAKVAKQGSRSSSSA--------CGSADVLEALGVV 69 (233)
Q Consensus 30 ist~aA~vlA~~G~~V~~HG~~~~~~k--------~Gs~dvle~LGi~ 69 (233)
.-.++|+.|++.|++|..-=.+..... .-.-++|+.||+.
T Consensus 12 aGl~~A~~L~~~G~~v~viE~~~~~~~~g~~i~~~~~a~~~L~~lGl~ 59 (372)
T PRK05868 12 AGTAAAYWLGRHGYSVTMVERHPGLRPGGQAIDVRGPALDVLERMGLL 59 (372)
T ss_pred HHHHHHHHHHhCCCCEEEEcCCCCCCCCceeeeeCchHHHHHHhcCCH
Confidence 456788999999999986432221111 1147899999973
No 92
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=21.28 E-value=1.4e+02 Score=28.24 Aligned_cols=40 Identities=13% Similarity=0.174 Sum_probs=26.1
Q ss_pred chHHHHHHHHcCCCcEEeeCCC-CCCCcch---HHHHHHHcCCC
Q 026769 30 ISTGASILAAACGAKVAKQGSR-SSSSACG---SADVLEALGVV 69 (233)
Q Consensus 30 ist~aA~vlA~~G~~V~~HG~~-~~~~k~G---s~dvle~LGi~ 69 (233)
.-.++|..||+.|++|++-=-+ ..+..+| +..+++.+|++
T Consensus 50 AG~~aA~~LA~~G~~VlllEr~~~~~k~cgg~i~~~~l~~lgl~ 93 (450)
T PLN00093 50 AGACAAETLAKGGIETFLIERKLDNAKPCGGAIPLCMVGEFDLP 93 (450)
T ss_pred HHHHHHHHHHhCCCcEEEEecCCCCCCCccccccHhHHhhhcCc
Confidence 4457888999999999752211 1122244 56788888876
No 93
>cd03034 ArsC_ArsC Arsenate Reductase (ArsC) family, ArsC subfamily; arsenic reductases similar to that encoded by arsC on the R733 plasmid of Escherichia coli. E. coli ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], the first step in the detoxification of arsenic, using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX). ArsC contains a single catalytic cysteine, within a thioredoxin fold, that forms a covalent thiolate-As(V) intermediate, which is reduced by GRX through a mixed GSH-arsenate intermediate. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases.
Probab=21.22 E-value=90 Score=23.54 Aligned_cols=54 Identities=17% Similarity=0.091 Sum_probs=37.2
Q ss_pred CCCCCCCHHHHHHHHHHcCeeeeecc--cccHHhhhhHHHHhhcC--CCchhHHhhhc
Q 026769 67 GVVIDLDPEGVRRCVDEAGIGFMMST--KYHPAMKFVRPVRKKLK--VKTVFNILGPM 120 (233)
Q Consensus 67 Gi~~~~~~~~a~~~L~~~gi~fl~~~--~~~P~l~~l~~~R~~Lg--~Rt~~Ntl~~L 120 (233)
|++-+.+-.+|.+.|+++|+-|-... .--|.-..|..+=+.+| +..++|+=++.
T Consensus 5 ~~~~C~t~rkA~~~L~~~~i~~~~~di~~~~~t~~el~~~l~~~~~~~~~lin~~~~~ 62 (112)
T cd03034 5 HNPRCSKSRNALALLEEAGIEPEIVEYLKTPPTAAELRELLAKLGISPRDLLRTKEAP 62 (112)
T ss_pred ECCCCHHHHHHHHHHHHCCCCeEEEecccCCcCHHHHHHHHHHcCCCHHHHHhcCCch
Confidence 56777788899999999997766554 33445556666667777 56777765543
No 94
>COG1049 AcnB Aconitase B [Energy production and conversion]
Probab=21.04 E-value=53 Score=32.88 Aligned_cols=26 Identities=42% Similarity=0.500 Sum_probs=18.6
Q ss_pred eeEeccCCCCCCCCcc-------hHHHHHHHHc
Q 026769 15 VDIVGTGGDGANTVNI-------STGASILAAA 40 (233)
Q Consensus 15 ~di~Gtg~Dg~~t~ni-------st~aA~vlA~ 40 (233)
=|.+|||||...+|.+ |-++||.+|-
T Consensus 480 pDtvgtGGDSHTRfpiGisFpAgSGlVAfAaat 512 (852)
T COG1049 480 PDTVGTGGDSHTRFPIGISFPAGSGLVAFAAAT 512 (852)
T ss_pred CcceecCCcccccccccceecCCCchhhhhHhc
Confidence 4799999999987775 3345665543
No 95
>PRK12559 transcriptional regulator Spx; Provisional
Probab=20.91 E-value=75 Score=24.90 Aligned_cols=54 Identities=4% Similarity=0.025 Sum_probs=35.6
Q ss_pred CCCCCCCHHHHHHHHHHcCeeeeecc--cccHHhhhhHHHHhh--cCCCchhHHhhhc
Q 026769 67 GVVIDLDPEGVRRCVDEAGIGFMMST--KYHPAMKFVRPVRKK--LKVKTVFNILGPM 120 (233)
Q Consensus 67 Gi~~~~~~~~a~~~L~~~gi~fl~~~--~~~P~l~~l~~~R~~--Lg~Rt~~Ntl~~L 120 (233)
+.+-+.+-..|.+.|+++|+.|-... .--|....|..+-+. +|++.++|+=++.
T Consensus 6 ~~~~C~~crkA~~~L~~~gi~~~~~di~~~~~s~~el~~~l~~~~~g~~~lin~~~~~ 63 (131)
T PRK12559 6 TTASCASCRKAKAWLEENQIDYTEKNIVSNSMTVDELKSILRLTEEGATEIISTRSKT 63 (131)
T ss_pred eCCCChHHHHHHHHHHHcCCCeEEEEeeCCcCCHHHHHHHHHHcCCCHHHHHhcCcHH
Confidence 44556667788888999888876554 335556667777666 4656666665554
No 96
>PRK08244 hypothetical protein; Provisional
Probab=20.90 E-value=1.7e+02 Score=27.64 Aligned_cols=45 Identities=20% Similarity=0.243 Sum_probs=29.1
Q ss_pred EeccCCCCCCCCcchHHHHHHHHcCCCcEEeeCCCC---CCCc-c----hHHHHHHHcCC
Q 026769 17 IVGTGGDGANTVNISTGASILAAACGAKVAKQGSRS---SSSA-C----GSADVLEALGV 68 (233)
Q Consensus 17 i~Gtg~Dg~~t~nist~aA~vlA~~G~~V~~HG~~~---~~~k-~----Gs~dvle~LGi 68 (233)
|||-| ..-.++|+.|++.|++|..-=-+. ..++ . .+-++|+.+|+
T Consensus 7 IVGaG-------paGl~lA~~L~~~G~~v~viEr~~~~~~~~ra~~l~~~~~e~l~~lGl 59 (493)
T PRK08244 7 IIGGG-------PVGLMLASELALAGVKTCVIERLKETVPYSKALTLHPRTLEILDMRGL 59 (493)
T ss_pred EECCC-------HHHHHHHHHHHHCCCcEEEEecCCCCCCCcceeEecHHHHHHHHhcCc
Confidence 67743 345678899999999998422111 1121 1 16789999997
No 97
>PRK08013 oxidoreductase; Provisional
Probab=20.85 E-value=1.9e+02 Score=26.39 Aligned_cols=40 Identities=23% Similarity=0.247 Sum_probs=26.5
Q ss_pred chHHHHHHHHcCCCcEEeeCCCCCC---------Cc-----chHHHHHHHcCCC
Q 026769 30 ISTGASILAAACGAKVAKQGSRSSS---------SA-----CGSADVLEALGVV 69 (233)
Q Consensus 30 ist~aA~vlA~~G~~V~~HG~~~~~---------~k-----~Gs~dvle~LGi~ 69 (233)
.-.++|+.|++.|++|+.-=-+... .| ..+.++|++||+.
T Consensus 14 aGl~~A~~La~~G~~v~viE~~~~~~~~~g~~~~~r~~~l~~~s~~~L~~lGl~ 67 (400)
T PRK08013 14 VGLAVACGLQGSGLRVAVLEQRVPEPLAADAPPALRVSAINAASEKLLTRLGVW 67 (400)
T ss_pred HHHHHHHHHhhCCCEEEEEeCCCCcccccCCCCCceeeecchhHHHHHHHcCCc
Confidence 4567889999999999853322111 11 1267899999984
No 98
>KOG1533 consensus Predicted GTPase [General function prediction only]
Probab=20.58 E-value=4e+02 Score=23.84 Aligned_cols=64 Identities=20% Similarity=0.238 Sum_probs=42.8
Q ss_pred EeccCCCCCCCCcchHHHHHHHHcCCCcEEe----eCCCCCC--------CcchHHHHHHHcCCCCCCCHHHHHHHHH
Q 026769 17 IVGTGGDGANTVNISTGASILAAACGAKVAK----QGSRSSS--------SACGSADVLEALGVVIDLDPEGVRRCVD 82 (233)
Q Consensus 17 i~Gtg~Dg~~t~nist~aA~vlA~~G~~V~~----HG~~~~~--------~k~Gs~dvle~LGi~~~~~~~~a~~~L~ 82 (233)
|.|++|.|+.|+-.+-. -++++.|=+|.. -+|..++ .-.++.|+++++|+-......-+.+.|+
T Consensus 7 VIGPPgSGKsTYc~g~~--~fls~~gr~~~vVNLDPaNd~~~Y~~~v~I~elit~edvm~~~~LGPNg~l~yc~E~l~ 82 (290)
T KOG1533|consen 7 VIGPPGSGKSTYCNGMS--QFLSAIGRPVAVVNLDPANDNLPYECAVDIRELITVEDVMEELGLGPNGALKYCMEYLE 82 (290)
T ss_pred EEcCCCCCccchhhhHH--HHHHHhCCceEEEecCCcccCCCCCCcccHHHHccHHHHHHHhCCCCchhHHHHHHHHH
Confidence 68999999999876543 355666655442 6777665 2345899999999876655544444443
No 99
>PF13486 Dehalogenase: Reductive dehalogenase subunit
Probab=20.53 E-value=93 Score=28.10 Aligned_cols=26 Identities=27% Similarity=0.549 Sum_probs=19.7
Q ss_pred eCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHH
Q 026769 186 FDPLDYGIPRCTLESLQGGGPAYNAEVLRRVL 217 (233)
Q Consensus 186 i~P~~~gl~~~~~~~l~~~~~~~~a~~~~~vL 217 (233)
-.|+++|.++ - .++||||++.+++++
T Consensus 126 ~tPe~~GvPk--W----qGTPEEN~~miRaA~ 151 (308)
T PF13486_consen 126 PTPEELGVPK--W----QGTPEENLRMIRAAA 151 (308)
T ss_pred cchhhcCCCc--c----cCCHHHHHHHHHHHH
Confidence 3577777654 1 479999999999887
No 100
>COG3473 Maleate cis-trans isomerase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=20.49 E-value=4.4e+02 Score=23.01 Aligned_cols=96 Identities=16% Similarity=0.226 Sum_probs=65.7
Q ss_pred hHHHHHHHHcCCCcEEeeCCCCCCCcchHHHHHHHcCCCCCCCHHHHHHHHHHcCeeeeecccccHHhhhhHHHHhhcCC
Q 026769 31 STGASILAAACGAKVAKQGSRSSSSACGSADVLEALGVVIDLDPEGVRRCVDEAGIGFMMSTKYHPAMKFVRPVRKKLKV 110 (233)
Q Consensus 31 st~aA~vlA~~G~~V~~HG~~~~~~k~Gs~dvle~LGi~~~~~~~~a~~~L~~~gi~fl~~~~~~P~l~~l~~~R~~Lg~ 110 (233)
+--||+.||.+|+-|+..|=.. +.+..-.|+ -+++++.+++.+ .+|.+.|+..-+-.+| .||.
T Consensus 56 t~~aAl~Lada~vdvI~Y~Cts-------gS~i~G~~~-----d~ei~~~ie~~~----~v~vvTts~Avv~aL~-al~a 118 (238)
T COG3473 56 TERAALELADAGVDVIVYGCTS-------GSLIGGPGY-----DKEIAQRIEEAK----GVPVVTTSTAVVEALN-ALGA 118 (238)
T ss_pred HHHHHHhcCccccCEEEEeccc-------eeeecCCch-----hHHHHHHHHhcc----CCceeechHHHHHHHH-hhCc
Confidence 3458899999999998776433 223333333 345666677766 5788888876666664 6665
Q ss_pred CchhHHhhhccCCCCCCeEEEeecChhhHHHHHHHHHHcCCCeEEEEee
Q 026769 111 KTVFNILGPMLNPACVPFAVVGVYNENLVLKMANALQRFGLKRALVVHS 159 (233)
Q Consensus 111 Rt~~Ntl~~LlNP~~~~~~v~Gv~h~~~~~~~a~~l~~lg~~~~lvv~G 159 (233)
|. .+|+-=|-.+.-+++.+.+...|++ .+=++|
T Consensus 119 ~r---------------i~vlTPY~~evn~~e~ef~~~~Gfe-iv~~~~ 151 (238)
T COG3473 119 QR---------------ISVLTPYIDEVNQREIEFLEANGFE-IVDFKG 151 (238)
T ss_pred ce---------------EEEeccchhhhhhHHHHHHHhCCeE-EEEeec
Confidence 54 4455556678889999999999994 666776
No 101
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=20.38 E-value=2.1e+02 Score=25.99 Aligned_cols=48 Identities=29% Similarity=0.394 Sum_probs=31.7
Q ss_pred eeEeccCCCCCCCCcchHHHHHHHHcCCCcEEeeCCCCC---------CCc-----chHHHHHHHcCCC
Q 026769 15 VDIVGTGGDGANTVNISTGASILAAACGAKVAKQGSRSS---------SSA-----CGSADVLEALGVV 69 (233)
Q Consensus 15 ~di~Gtg~Dg~~t~nist~aA~vlA~~G~~V~~HG~~~~---------~~k-----~Gs~dvle~LGi~ 69 (233)
|-|+| || ..-.++|+.|++.|++|..--.+.. ..+ ..+-.+|+.||+-
T Consensus 6 v~IvG-gG------~aGl~~A~~L~~~G~~v~l~E~~~~~~~~~~~~~~~r~~~l~~~~~~~L~~lG~~ 67 (384)
T PRK08849 6 IAVVG-GG------MVGAATALGFAKQGRSVAVIEGGEPKAFEPSQPMDIRVSAISQTSVDLLESLGAW 67 (384)
T ss_pred EEEEC-cC------HHHHHHHHHHHhCCCcEEEEcCCCcccCCCCCCCCccEEEecHHHHHHHHHCCCc
Confidence 34777 33 3556788999999999996553321 111 1257899999974
No 102
>PRK13957 indole-3-glycerol-phosphate synthase; Provisional
Probab=20.33 E-value=3.7e+02 Score=23.62 Aligned_cols=123 Identities=12% Similarity=0.187 Sum_probs=83.1
Q ss_pred CCCCCHHHHHHHHHHcCeeeeec---c-cccHHhhhhHHHHhhcCCC--------chhHHhhhccCCCCCCeEEEeecCh
Q 026769 69 VIDLDPEGVRRCVDEAGIGFMMS---T-KYHPAMKFVRPVRKKLKVK--------TVFNILGPMLNPACVPFAVVGVYNE 136 (233)
Q Consensus 69 ~~~~~~~~a~~~L~~~gi~fl~~---~-~~~P~l~~l~~~R~~Lg~R--------t~~Ntl~~LlNP~~~~~~v~Gv~h~ 136 (233)
....++.+.++.+++.|.+-+.. + .|.=.+..|..+|+...++ ....+.+--..-+.+=..+..+..+
T Consensus 58 ~~~~d~~~~A~~y~~~GA~aISVlTe~~~F~Gs~~~l~~v~~~v~~PvL~KDFIid~~QI~ea~~~GADavLLI~~~L~~ 137 (247)
T PRK13957 58 RADYHPVQIAKTYETLGASAISVLTDQSYFGGSLEDLKSVSSELKIPVLRKDFILDEIQIREARAFGASAILLIVRILTP 137 (247)
T ss_pred CCCCCHHHHHHHHHHCCCcEEEEEcCCCcCCCCHHHHHHHHHhcCCCEEeccccCCHHHHHHHHHcCCCEEEeEHhhCCH
Confidence 33568899999999988766643 3 3555588899999876543 4445555555445555666677777
Q ss_pred hhHHHHHHHHHHcCCCeEEEEeeCCccccCCCCCeEEEEEeCCeEEEEEeCCCCC
Q 026769 137 NLVLKMANALQRFGLKRALVVHSEGLDEMSPLGPGLILDVTQEKIERFSFDPLDY 191 (233)
Q Consensus 137 ~~~~~~a~~l~~lg~~~~lvv~GeG~dE~s~~~~t~v~~~~~g~i~~~~i~P~~~ 191 (233)
.-...+.+.+..+|.+..+=||.+-+-|........+..+.+....++++++...
T Consensus 138 ~~l~~l~~~a~~lGle~LVEVh~~~El~~a~~~ga~iiGINnRdL~t~~vd~~~~ 192 (247)
T PRK13957 138 SQIKSFLKHASSLGMDVLVEVHTEDEAKLALDCGAEIIGINTRDLDTFQIHQNLV 192 (247)
T ss_pred HHHHHHHHHHHHcCCceEEEECCHHHHHHHHhCCCCEEEEeCCCCccceECHHHH
Confidence 7788888899999998666788733333334444556677777777888887543
No 103
>PLN02446 (5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase
Probab=20.16 E-value=4e+02 Score=23.70 Aligned_cols=78 Identities=12% Similarity=0.074 Sum_probs=52.2
Q ss_pred CCHHHHHHHHHHcCeeeeecccccH----HhhhhHHHHhhc--------CCCchhHHhhhccCCCCCCeEEEeecChhh-
Q 026769 72 LDPEGVRRCVDEAGIGFMMSTKYHP----AMKFVRPVRKKL--------KVKTVFNILGPMLNPACVPFAVVGVYNENL- 138 (233)
Q Consensus 72 ~~~~~a~~~L~~~gi~fl~~~~~~P----~l~~l~~~R~~L--------g~Rt~~Ntl~~LlNP~~~~~~v~Gv~h~~~- 138 (233)
.+|.+.++.+++.|.-+++.=.+-. .+..+..+++ . |+| . -.+..+++ +.+.+.++|-.--.-
T Consensus 43 ~dP~~~A~~~~~~Ga~~lHvVDLdgg~~~n~~~i~~i~~-~~~~vqvGGGIR-~-e~i~~~l~-~Ga~rViigT~Av~~~ 118 (262)
T PLN02446 43 KSAAEFAEMYKRDGLTGGHVIMLGADDASLAAALEALRA-YPGGLQVGGGVN-S-ENAMSYLD-AGASHVIVTSYVFRDG 118 (262)
T ss_pred CCHHHHHHHHHHCCCCEEEEEECCCCCcccHHHHHHHHh-CCCCEEEeCCcc-H-HHHHHHHH-cCCCEEEEchHHHhCC
Confidence 6899999999999998887644432 1333555555 3 788 4 88999888 667888888543222
Q ss_pred ---HHHHHHHHHHcCCCe
Q 026769 139 ---VLKMANALQRFGLKR 153 (233)
Q Consensus 139 ---~~~~a~~l~~lg~~~ 153 (233)
.+.+.++++..|.++
T Consensus 119 ~~~p~~v~~~~~~~G~~~ 136 (262)
T PLN02446 119 QIDLERLKDLVRLVGKQR 136 (262)
T ss_pred CCCHHHHHHHHHHhCCCC
Confidence 345555666666543
No 104
>TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase. Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317).
Probab=20.11 E-value=4.5e+02 Score=21.93 Aligned_cols=81 Identities=12% Similarity=0.174 Sum_probs=50.0
Q ss_pred CCHHHHHHHHHHcCeeeee---ccccc----HHhhhhHHHHhhc--------CCCchhHHhhhccCCCCCCeEEEeecCh
Q 026769 72 LDPEGVRRCVDEAGIGFMM---STKYH----PAMKFVRPVRKKL--------KVKTVFNILGPMLNPACVPFAVVGVYNE 136 (233)
Q Consensus 72 ~~~~~a~~~L~~~gi~fl~---~~~~~----P~l~~l~~~R~~L--------g~Rt~~Ntl~~LlNP~~~~~~v~Gv~h~ 136 (233)
.+|.++++.+++.|+..++ ...+. ..+..+..+++.. |+|+.- .+..+++ .++...++|..-.
T Consensus 28 ~dp~~~a~~~~~~g~~~l~v~dl~~~~~g~~~~~~~i~~i~~~~~~pi~~ggGI~~~e-d~~~~~~-~Ga~~vvlgs~~l 105 (230)
T TIGR00007 28 DDPVEAAKKWEEEGAERIHVVDLDGAKEGGPVNLPVIKKIVRETGVPVQVGGGIRSLE-DVEKLLD-LGVDRVIIGTAAV 105 (230)
T ss_pred CCHHHHHHHHHHcCCCEEEEEeCCccccCCCCcHHHHHHHHHhcCCCEEEeCCcCCHH-HHHHHHH-cCCCEEEEChHHh
Confidence 4788888888887664443 33331 1234566666654 445543 3455555 5677788886554
Q ss_pred hhHHHHHHHHHHcCCCeE
Q 026769 137 NLVLKMANALQRFGLKRA 154 (233)
Q Consensus 137 ~~~~~~a~~l~~lg~~~~ 154 (233)
.-.+.+.++.+..|.++.
T Consensus 106 ~d~~~~~~~~~~~g~~~i 123 (230)
T TIGR00007 106 ENPDLVKELLKEYGPERI 123 (230)
T ss_pred hCHHHHHHHHHHhCCCcE
Confidence 556778888888875443
No 105
>COG0429 Predicted hydrolase of the alpha/beta-hydrolase fold [General function prediction only]
Probab=20.09 E-value=1.4e+02 Score=27.65 Aligned_cols=40 Identities=28% Similarity=0.347 Sum_probs=32.8
Q ss_pred eEEEeecChhhHHHHHHHHHHcCCCeEEEEe--e-CCccccCCC
Q 026769 128 FAVVGVYNENLVLKMANALQRFGLKRALVVH--S-EGLDEMSPL 168 (233)
Q Consensus 128 ~~v~Gv~h~~~~~~~a~~l~~lg~~~~lvv~--G-eG~dE~s~~ 168 (233)
|.+.|-+|.+|+.-+.+++...|+ .++|++ | .|+.+.+|.
T Consensus 82 HGL~G~s~s~y~r~L~~~~~~rg~-~~Vv~~~Rgcs~~~n~~p~ 124 (345)
T COG0429 82 HGLEGSSNSPYARGLMRALSRRGW-LVVVFHFRGCSGEANTSPR 124 (345)
T ss_pred eccCCCCcCHHHHHHHHHHHhcCC-eEEEEecccccCCcccCcc
Confidence 567788899999999999999998 577777 7 777765553
No 106
>PRK07178 pyruvate carboxylase subunit A; Validated
Probab=20.06 E-value=2.2e+02 Score=27.09 Aligned_cols=72 Identities=17% Similarity=0.175 Sum_probs=37.6
Q ss_pred eeEeccCCCCCCCCcchHHHHHHHHcCCCcEEeeCCC---CCCCcchHHHHHHHcCCCCC-------CCHHHHHHHHHHc
Q 026769 15 VDIVGTGGDGANTVNISTGASILAAACGAKVAKQGSR---SSSSACGSADVLEALGVVID-------LDPEGVRRCVDEA 84 (233)
Q Consensus 15 ~di~Gtg~Dg~~t~nist~aA~vlA~~G~~V~~HG~~---~~~~k~Gs~dvle~LGi~~~-------~~~~~a~~~L~~~ 84 (233)
+|.+=+|| |.-.-| ...+-++.+.|++++-...+ ....|.-..++++++||++. .+.+++.+..++.
T Consensus 74 ~D~I~pg~-g~lse~--~~~a~~~e~~Gi~~igps~~~i~~~~DK~~~r~~l~~~GIp~pp~~~~~~~~~~e~~~~~~~i 150 (472)
T PRK07178 74 CDALHPGY-GFLSEN--AELAEICAERGIKFIGPSAEVIRRMGDKTEARRAMIKAGVPVTPGSEGNLADLDEALAEAERI 150 (472)
T ss_pred CCEEEeCC-CCcccC--HHHHHHHHHcCCCccCCCHHHHHHhcCHHHHHHHHHHCCCCCCCCcCcCCCCHHHHHHHHHHc
Confidence 45554454 332233 23455666677766522211 13446667777777777652 2455565656665
Q ss_pred Ceeee
Q 026769 85 GIGFM 89 (233)
Q Consensus 85 gi~fl 89 (233)
|+-++
T Consensus 151 gyPvv 155 (472)
T PRK07178 151 GYPVM 155 (472)
T ss_pred CCcEE
Confidence 55443
Done!