STRING 9.05 
  AT5G04440 protein (Arabidopsis thaliana) - STRING network view
 

This is the evidence view. Different line colors represent the types of evidence for the association.

 
   
Your Input:
AT5G04440
unknown protein; unknown protein; FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- chloroplast; EXPRESSED IN- 23 plant structures; EXPRESSED DURING- 13 growth stages; BEST Arabidopsis thaliana protein match is- unknown protein (TAIR-AT4G31115.2); Has 213 Blast hits to 213 proteins in 56 species- Archae - 0; Bacteria - 98; Metazoa - 0; Fungi - 0; Plants - 42; Viruses - 0; Other Eukaryotes - 73 (source- NCBI BLink). (255 aa)
(Arabidopsis thaliana)
Predicted Functional Partners:
PSB28
PSB28 (PHOTOSYSTEM II REACTION CENTER PSB28 PROTEIN); Similar to PsbW subunit of photosystem II [...] (183 aa)
      0.563
ATAB2
ATAB2; RNA binding; Encodes a chloroplast-localized protein ATAB2. ATAB2 is involved in the bio [...] (374 aa)
      0.548
AT1G68590
plastid-specific 30S ribosomal protein 3, putative / PSRP-3, putative; plastid-specific 30S rib [...] (166 aa)
      0.546
AT3G17930
unknown protein; unknown protein; FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biolog [...] (190 aa)
      0.545
AT5G52970
thylakoid lumen 15.0 kDa protein; thylakoid lumen 15.0 kDa protein; FUNCTIONS IN- molecular_fun [...] (223 aa)
      0.544
PPL1
PPL1 (PsbP-like protein 1); calcium ion binding; PsbP-like protein 1 (PPL1); FUNCTIONS IN- calc [...] (230 aa)
      0.544
APE1
APE1 (ACCLIMATION OF PHOTOSYNTHESIS TO ENVIRONMENT); mutant has Altered acclimation responses; (286 aa)
      0.540
AT1G03600
photosystem II family protein; photosystem II family protein; FUNCTIONS IN- molecular_function [...] (174 aa)
       0.525
PSBO2
PSBO2 (PHOTOSYSTEM II SUBUNIT O-2); oxygen evolving/ poly(U) binding; Encodes a protein which i [...] (331 aa)
      0.524
TIC21
TIC21 (TRANSLOCON AT INNER MEMBRANE OF CHLOROPLASTS 21); copper uptake transmembrane transporte [...] (296 aa)
       0.518
 
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Network Display - Nodes are either colored (if they are directly linked to the input - as in the table) or white (nodes of a higher iteration/depth). Edges, i.e. predicted functional links, consist of up to eight lines: one color for each type of evidence. Hover or click to reveal more information about the node/edge.

Active Prediction Methods:
Neighborhood Gene Fusion Co-occurrence
Co-expression Experiments Databases Textmining
 
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