BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 026771
         (233 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2ZOF|A Chain A, Crystal Structure Of Mouse Carnosinase Cn2 Complexed With
           Mn Bestatin
 pdb|2ZOF|B Chain B, Crystal Structure Of Mouse Carnosinase Cn2 Complexed With
           Mn Bestatin
 pdb|2ZOG|A Chain A, Crystal Structure Of Mouse Carnosinase Cn2 Complexed With
           Zn Bestatin
 pdb|2ZOG|B Chain B, Crystal Structure Of Mouse Carnosinase Cn2 Complexed With
           Zn Bestatin
          Length = 479

 Score = 30.0 bits (66), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 20/77 (25%), Positives = 33/77 (42%), Gaps = 22/77 (28%)

Query: 177 DAFIEVSIEVPFAFRAFPVEAIESTGTQVLDQILKLMLPRFMSQVS-------------- 222
           +A+ +   E+P   R F +E +E +G++ LD+++     +F   V               
Sbjct: 149 EAYQKTGQEIPVNLR-FCLEGMEESGSEGLDELIFAQKDKFFKDVDYVCISDNYWLGKNK 207

Query: 223 -------RSICYSFIEV 232
                  R ICY FIEV
Sbjct: 208 PCITYGLRGICYFFIEV 224


>pdb|2O7I|A Chain A, The X-Ray Crystal Structure Of A Thermophilic Cellobiose
           Binding Protein Bound With Cellobiose
 pdb|3I5O|A Chain A, The X-Ray Crystal Structure Of A Thermophilic Cellobiose
           Binding Protein Bound With Cellopentaose
 pdb|3I5O|B Chain B, The X-Ray Crystal Structure Of A Thermophilic Cellobiose
           Binding Protein Bound With Cellopentaose
          Length = 592

 Score = 30.0 bits (66), Expect = 1.1,   Method: Compositional matrix adjust.
 Identities = 16/37 (43%), Positives = 21/37 (56%), Gaps = 7/37 (18%)

Query: 76  EYMSLPASQYSV-------LDAERIERVDDNTFRCYV 105
           ++M LPA QY +       + AER E VDD T R Y+
Sbjct: 37  QFMYLPAFQYDLGRDAWIPVIAERYEFVDDKTLRIYI 73


>pdb|1I4W|A Chain A, The Crystal Structure Of The Transcription Factor Sc-Mttfb
           Offers Intriguing Insights Into Mitochondrial
           Transcription
          Length = 353

 Score = 27.3 bits (59), Expect = 6.6,   Method: Compositional matrix adjust.
 Identities = 16/53 (30%), Positives = 27/53 (50%), Gaps = 2/53 (3%)

Query: 133 KLLSCKLEGSPIVVAQNDKFDASMINRISCDSNSSNSEVQ--QLTSDAFIEVS 183
           K L+ K EGSP+ + + D +D S  + +  +      EVQ     +D F+ V+
Sbjct: 96  KFLNAKFEGSPLQILKRDPYDWSTYSNLIDEERIFVPEVQSSDHINDKFLTVA 148


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.325    0.135    0.391 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,392,533
Number of Sequences: 62578
Number of extensions: 184606
Number of successful extensions: 460
Number of sequences better than 100.0: 3
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 459
Number of HSP's gapped (non-prelim): 3
length of query: 233
length of database: 14,973,337
effective HSP length: 96
effective length of query: 137
effective length of database: 8,965,849
effective search space: 1228321313
effective search space used: 1228321313
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 50 (23.9 bits)