BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 026771
         (233 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|P31525|Y1590_SYNP2 Uncharacterized protein SYNPCC7002_A1590 OS=Synechococcus sp.
           (strain ATCC 27264 / PCC 7002 / PR-6)
           GN=SYNPCC7002_A1590 PE=4 SV=2
          Length = 192

 Score = 34.7 bits (78), Expect = 0.60,   Method: Compositional matrix adjust.
 Identities = 35/173 (20%), Positives = 80/173 (46%), Gaps = 10/173 (5%)

Query: 56  RFVARRKESVRVRQLQRPLIEYM-SLPASQYSVLDAERIERVDDNTFRCYVYRFKFFA-F 113
           RF A    ++ V +  RP+ EY+  +     ++ D ER E++  + ++  +    F   +
Sbjct: 4   RFQALEVVALSVPEAPRPIQEYLQDIDCLVGAIADPERTEKIAPDQYQLKMRPIGFLDLY 63

Query: 114 EICPVLLVRVE-EQPNGCCIKLLSCKLEG-SPIVVAQNDKFDASMINRISCDSNSSNSEV 171
           +  P++ +++  ++     IK L  +L G  P +      F   +  R+   ++     +
Sbjct: 64  KFQPIVTLKIWCDRHYQVHIKSLDYQLRGLEPFMKG----FKLDVTGRLQPIADEQEQWL 119

Query: 172 QQLTSDAFIEVSIEVPFAFRAFPVEAIESTGTQVLDQILKLMLPRFMSQVSRS 224
             L  +A ++V +E+P      P   ++ TG ++L +IL+ +  + + Q+ R 
Sbjct: 120 --LEGEADLQVKLELPPPLWFTPKALVKKTGDRLLREILQRIKGQLLDQLVRD 170


>sp|P0CO18|SWR1_CRYNJ Helicase SWR1 OS=Cryptococcus neoformans var. neoformans serotype D
           (strain JEC21 / ATCC MYA-565) GN=SWR1 PE=3 SV=1
          Length = 1246

 Score = 32.7 bits (73), Expect = 2.4,   Method: Composition-based stats.
 Identities = 24/86 (27%), Positives = 38/86 (44%), Gaps = 6/86 (6%)

Query: 18  NKIRNPTNTSSLTLNTGFFHLAQKSPFRVSAATSPAKARFVARRKESV----RVRQLQRP 73
           N++  P N  S T N G F L + S   VS A+ PA    + R+        R R+++  
Sbjct: 66  NRLEEPHNPVSSTANIGNFALLESSSAEVSDASCPATMPILVRQSPKTCSQPRTRKVKLS 125

Query: 74  LIEYMSLPASQYSVLDAERIERVDDN 99
            +   S P    +  D E   R++D+
Sbjct: 126 TLSLSSDPDPDIN--DPEFKARLEDS 149


>sp|P0CO19|SWR1_CRYNB Helicase SWR1 OS=Cryptococcus neoformans var. neoformans serotype D
           (strain B-3501A) GN=SWR1 PE=3 SV=1
          Length = 1246

 Score = 32.7 bits (73), Expect = 2.4,   Method: Composition-based stats.
 Identities = 24/86 (27%), Positives = 38/86 (44%), Gaps = 6/86 (6%)

Query: 18  NKIRNPTNTSSLTLNTGFFHLAQKSPFRVSAATSPAKARFVARRKESV----RVRQLQRP 73
           N++  P N  S T N G F L + S   VS A+ PA    + R+        R R+++  
Sbjct: 66  NRLEEPHNPVSSTANIGNFALLESSSAEVSDASCPATMPILVRQSPKTCSQPRTRKVKLS 125

Query: 74  LIEYMSLPASQYSVLDAERIERVDDN 99
            +   S P    +  D E   R++D+
Sbjct: 126 TLSLSSDPDPDIN--DPEFKARLEDS 149


>sp|O60035|PDC2_CANAX Protein PDC2 OS=Candida albicans GN=PDC2 PE=3 SV=1
          Length = 836

 Score = 31.6 bits (70), Expect = 4.3,   Method: Composition-based stats.
 Identities = 18/53 (33%), Positives = 27/53 (50%), Gaps = 4/53 (7%)

Query: 134 LLSCKLEGS----PIVVAQNDKFDASMINRISCDSNSSNSEVQQLTSDAFIEV 182
           +L C ++GS    PI+V + DKFD S    +S +S   +S   Q   +   EV
Sbjct: 223 MLGCNIDGSEKLTPIIVGKYDKFDVSKSTHVSLNSMQFDSVSYQTLMNKLTEV 275


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.323    0.133    0.384 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 72,794,242
Number of Sequences: 539616
Number of extensions: 2665979
Number of successful extensions: 8052
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 8052
Number of HSP's gapped (non-prelim): 6
length of query: 233
length of database: 191,569,459
effective HSP length: 114
effective length of query: 119
effective length of database: 130,053,235
effective search space: 15476334965
effective search space used: 15476334965
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 59 (27.3 bits)