Query 026771
Match_columns 233
No_of_seqs 117 out of 162
Neff 5.7
Searched_HMMs 46136
Date Fri Mar 29 12:27:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026771.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026771hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF09366 DUF1997: Protein of u 100.0 1.2E-44 2.5E-49 301.1 18.8 154 71-228 1-155 (158)
2 PF06240 COXG: Carbon monoxide 98.1 0.00016 3.5E-09 58.4 13.8 136 64-217 2-139 (140)
3 cd07823 SRPBCC_5 Ligand-bindin 97.7 0.0021 4.6E-08 51.6 14.4 140 63-217 3-144 (146)
4 cd05018 CoxG Carbon monoxide d 96.9 0.051 1.1E-06 42.2 13.6 136 63-217 5-143 (144)
5 COG3427 Carbon monoxide dehydr 96.2 0.21 4.6E-06 41.6 13.2 134 65-225 7-143 (146)
6 cd08861 OtcD1_ARO-CYC_like N-t 90.8 3.8 8.1E-05 31.8 9.9 132 64-217 4-140 (142)
7 cd08866 SRPBCC_11 Ligand-bindi 88.5 10 0.00022 29.5 12.6 134 63-217 3-142 (144)
8 PF10604 Polyketide_cyc2: Poly 79.7 24 0.00052 26.6 13.5 129 62-216 5-137 (139)
9 cd08862 SRPBCC_Smu440-like Lig 77.4 29 0.00063 26.3 12.0 45 62-106 4-54 (138)
10 cd07813 COQ10p_like Coenzyme Q 70.3 48 0.001 25.6 10.0 127 63-217 3-135 (138)
11 cd08904 START_STARD6-like Lipi 66.8 84 0.0018 27.3 10.3 81 62-142 49-137 (204)
12 PF11485 DUF3211: Protein of u 58.2 13 0.00028 30.7 3.4 48 70-119 12-61 (136)
13 cd07824 SRPBCC_6 Ligand-bindin 56.5 22 0.00047 28.1 4.5 40 177-216 102-145 (146)
14 cd08869 START_RhoGAP C-termina 51.8 1.5E+02 0.0032 25.1 9.8 138 64-218 49-195 (197)
15 cd07817 SRPBCC_8 Ligand-bindin 41.4 1.5E+02 0.0033 22.2 10.7 44 63-106 4-48 (139)
16 COG0694 Thioredoxin-like prote 35.3 12 0.00026 28.9 -0.1 17 3-19 49-65 (93)
17 cd08865 SRPBCC_10 Ligand-bindi 29.3 2.4E+02 0.0051 20.9 14.0 43 64-106 4-53 (140)
18 cd08908 START_STARD12-like C-t 27.6 4.1E+02 0.0088 23.1 8.8 138 63-218 56-202 (204)
19 smart00243 GAS2 Growth-Arrest- 24.3 1.1E+02 0.0025 22.6 3.4 23 84-106 13-35 (73)
20 PRK02899 adaptor protein; Prov 22.5 64 0.0014 27.9 2.2 47 91-137 1-79 (197)
21 PF03364 Polyketide_cyc: Polyk 20.0 3.6E+02 0.0079 20.1 5.8 23 192-214 108-130 (130)
No 1
>PF09366 DUF1997: Protein of unknown function (DUF1997); InterPro: IPR018971 This family of proteins are functionally uncharacterised.
Probab=100.00 E-value=1.2e-44 Score=301.10 Aligned_cols=154 Identities=39% Similarity=0.618 Sum_probs=148.4
Q ss_pred CccHHHhhcCCce-eeeeCCccceeEecCCeEEEEeecccEEeEEEeEEEEEEEEEcCCceEEEEeeeeeeCCcchhccc
Q 026771 71 QRPLIEYMSLPAS-QYSVLDAERIERVDDNTFRCYVYRFKFFAFEICPVLLVRVEEQPNGCCIKLLSCKLEGSPIVVAQN 149 (233)
Q Consensus 71 ~~~l~~YL~~P~~-~~allDp~~ie~Lgd~~fRl~v~~l~ff~~eV~P~V~lrV~~~~~g~~i~s~~~~l~G~~~v~~~n 149 (233)
+.+|++||++|++ +++|+||+++|+||||+|||+|+|++||+|+|+|+|+|+|+++++||.|++.+|+|+|+++++. |
T Consensus 1 ~~~l~~YL~~~~r~~~~~~d~~~ie~l~~~~yr~~~~~~~~~~~~v~P~v~l~v~~~~~~~~i~~~~~~l~G~~~~~~-~ 79 (158)
T PF09366_consen 1 QAPLAEYLSDPQRWFSALFDPMRIEPLGDNTYRLKMRPFQFFGFEVEPVVDLRVWPQDDGLTIRSLDCELRGSPLVEQ-N 79 (158)
T ss_pred CCchHHHHhCchhHHHHhcCHHHcEEcCCCeEEEEEcCccEEEEEEEEEEEEEEEEcCCCeEEEEEEEEEeCCCcccc-C
Confidence 3589999999999 9999999999999999999999999999999999999999999999999999999999999887 9
Q ss_pred cccceeeeEEEEecCCCCCCCcceEEEEEEEEEEEEcCccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc
Q 026771 150 DKFDASMINRISCDSNSSNSEVQQLTSDAFIEVSIEVPFAFRAFPVEAIESTGTQVLDQILKLMLPRFMSQVSRSICYS 228 (233)
Q Consensus 150 ~~F~l~l~~~L~~~~~~~~~~~t~l~g~~~L~V~v~lP~~~~llP~~lle~tG~~vL~~Il~~i~~rf~~qL~~Dy~~~ 228 (233)
++|+++++|.|+|.+ .++.++|+|+++|+|++++|++|+++|++++|+|||++|++|+++|++||++||++||+.-
T Consensus 80 ~~f~l~~~~~l~~~~---~~~~t~l~~~~~l~V~v~~P~~~~~~P~~~l~~~G~~vl~~il~~i~~r~~~~l~~Dy~~w 155 (158)
T PF09366_consen 80 DGFSLDLQASLYPEE---PPGRTRLEGDADLSVSVELPPPFRLLPESLLESTGNAVLQQILRQIKPRFLQQLQADYHRW 155 (158)
T ss_pred CcEEEEEEEEEEEec---CCCceEEEEEEEEEEEEEcChhHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999954 5688999999999999999999999999999999999999999999999999999999864
No 2
>PF06240 COXG: Carbon monoxide dehydrogenase subunit G (CoxG); InterPro: IPR010419 The CO dehydrogenase structural genes coxMSL are flanked by nine accessory genes arranged as the cox gene cluster. The cox genes are specifically and coordinately transcribed under chemolithoautotrophic conditions in the presence of CO as carbon and energy source [].; PDB: 2NS9_A 2PCS_A.
Probab=98.08 E-value=0.00016 Score=58.40 Aligned_cols=136 Identities=17% Similarity=0.187 Sum_probs=86.9
Q ss_pred EEEeccCCccHHHhhcCCceeeeeC-CccceeEecCCeEEEEee-cccEEeEEEeEEEEEEEEEcCCceEEEEeeeeeeC
Q 026771 64 SVRVRQLQRPLIEYMSLPASQYSVL-DAERIERVDDNTFRCYVY-RFKFFAFEICPVLLVRVEEQPNGCCIKLLSCKLEG 141 (233)
Q Consensus 64 ~v~v~e~~~~l~~YL~~P~~~~all-Dp~~ie~Lgd~~fRl~v~-~l~ff~~eV~P~V~lrV~~~~~g~~i~s~~~~l~G 141 (233)
+..|+.+.+.+-++|.+|+.+.+|+ .-+.+|.++ +.|+.++. +++++..++.=.+.+.=...++... +++.|
T Consensus 2 s~~v~a~~~~vw~~l~D~~~l~~ciPG~~~~e~~~-~~~~~~~~v~vG~i~~~~~g~~~~~~~~~~~~~~-----~~~~g 75 (140)
T PF06240_consen 2 SFEVPAPPEKVWAFLSDPENLARCIPGVESIEKVG-DEYKGKVKVKVGPIKGTFDGEVRITEIDPPESYT-----LEFEG 75 (140)
T ss_dssp EEEECS-HHHHHHHHT-HHHHHHHSTTEEEEEEEC-TEEEEEEEEESCCCEEEEEEEEEEEEEETTTEEE-----EEEEE
T ss_pred cEEecCCHHHHHHHhcCHHHHHhhCCCcEEeeecC-cEEEEEEEEEeccEEEEEEEEEEEEEcCCCcceE-----eeeec
Confidence 4567777889999999999987787 457899999 99999887 7888777775555555444444433 33333
Q ss_pred CcchhccccccceeeeEEEEecCCCCCCCcceEEEEEEEEEEEEcCccccccchHHHHHHHHHHHHHHHHHHHHHH
Q 026771 142 SPIVVAQNDKFDASMINRISCDSNSSNSEVQQLTSDAFIEVSIEVPFAFRAFPVEAIESTGTQVLDQILKLMLPRF 217 (233)
Q Consensus 142 ~~~v~~~n~~F~l~l~~~L~~~~~~~~~~~t~l~g~~~L~V~v~lP~~~~llP~~lle~tG~~vL~~Il~~i~~rf 217 (233)
.+.- ..+.+...-.+...+ .++ |.+.|++++++ .+++..+..++++.+.+.+++++...+..++
T Consensus 76 ~g~~----~~~~~~~~~~~~~~~---~~~-T~v~~~~~~~~----~G~la~~g~~~i~~~~~~l~~~f~~~l~~~l 139 (140)
T PF06240_consen 76 RGRG----GGSSASANITLSLED---DGG-TRVTWSADVEV----GGPLASLGQRLIESVARRLIEQFFENLERKL 139 (140)
T ss_dssp EECT----CCEEEEEEEEEEECC---CTC-EEEEEEEEEEE----ECHHHHC-HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCc----cceEEEEEEEEEcCC---CCC-cEEEEEEEEEE----ccCHHHhhHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3321 123333333334321 233 99999997775 4667777777777777777777776665543
No 3
>cd07823 SRPBCC_5 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=97.71 E-value=0.0021 Score=51.56 Aligned_cols=140 Identities=15% Similarity=0.094 Sum_probs=85.0
Q ss_pred EEEEeccCCccHHHhhcCCceeeeeCC-ccceeEecCCeEEEEeecccEEeEEEeEEEEEEEEEcC-CceEEEEeeeeee
Q 026771 63 ESVRVRQLQRPLIEYMSLPASQYSVLD-AERIERVDDNTFRCYVYRFKFFAFEICPVLLVRVEEQP-NGCCIKLLSCKLE 140 (233)
Q Consensus 63 ~~v~v~e~~~~l~~YL~~P~~~~allD-p~~ie~Lgd~~fRl~v~~l~ff~~eV~P~V~lrV~~~~-~g~~i~s~~~~l~ 140 (233)
.++.++.+++.+=++|.+|+.+-+|+. -+.++.+++++|+.++ ++++.++...=...+++...+ .+-.+... ..
T Consensus 3 ~~~~v~a~pe~vw~~l~D~~~~~~~~pg~~~~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~---~~ 78 (146)
T cd07823 3 NEFTVPAPPDRVWALLLDIERVAPCLPGASLTEVEGDDEYKGTV-KVKLGPISASFKGTARLLEDDEAARRAVLE---AT 78 (146)
T ss_pred ceEEecCCHHHHHHHhcCHHHHHhcCCCceeccccCCCeEEEEE-EEEEccEEEEEEEEEEEEeccCCCcEEEEE---EE
Confidence 356677788999999999999878875 4667888889997776 344433333223344555443 33333322 23
Q ss_pred CCcchhccccccceeeeEEEEecCCCCCCCcceEEEEEEEEEEEEcCccccccchHHHHHHHHHHHHHHHHHHHHHH
Q 026771 141 GSPIVVAQNDKFDASMINRISCDSNSSNSEVQQLTSDAFIEVSIEVPFAFRAFPVEAIESTGTQVLDQILKLMLPRF 217 (233)
Q Consensus 141 G~~~v~~~n~~F~l~l~~~L~~~~~~~~~~~t~l~g~~~L~V~v~lP~~~~llP~~lle~tG~~vL~~Il~~i~~rf 217 (233)
|.+. .-.......++-.|.+ .++.|.+.++++++++.- +..+...++++..+.++++.++.++.|+
T Consensus 79 g~~~--~~~g~~~~~~~~~l~~-----~~~gT~v~~~~~~~~~g~----l~~l~~~~v~~~~~~~~~~~~~~l~~~~ 144 (146)
T cd07823 79 GKDA--RGQGTAEATVTLRLSP-----AGGGTRVTVDTDLALTGK----LAQFGRGGIGDVAGRLLAQFAANLEARL 144 (146)
T ss_pred EecC--CCcceEEEEEEEEEEe-----cCCcEEEEEEEEEEEeeE----hHHhChhHHHHHHHHHHHHHHHHHHHHh
Confidence 3210 0001112333333444 225688999888865544 4556677888888888888887777664
No 4
>cd05018 CoxG Carbon monoxide dehydrogenase subunit G (CoxG). CoxG has been shown, in Oligotropha carboxidovorans, to anchor the carbon monoxide (CO) dehydrogenase to the cytoplasmic membrane. The gene encoding CoxG is part of the Cox cluster (coxBCMSLDEFGHIK) located on a low-copy-number, circular, megaplasmid pHCG3. This cluster includes genes encoding subunits of CO dehydrogenase and several accessory components involved in the utilization of CO. This family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=96.92 E-value=0.051 Score=42.22 Aligned_cols=136 Identities=13% Similarity=0.111 Sum_probs=80.9
Q ss_pred EEEEeccCCccHHHhhcCCceeeeeC-CccceeEecCCeEEEEee-cccEEeEEEeEEEEEEEEEcCCceEEEEeeeeee
Q 026771 63 ESVRVRQLQRPLIEYMSLPASQYSVL-DAERIERVDDNTFRCYVY-RFKFFAFEICPVLLVRVEEQPNGCCIKLLSCKLE 140 (233)
Q Consensus 63 ~~v~v~e~~~~l~~YL~~P~~~~all-Dp~~ie~Lgd~~fRl~v~-~l~ff~~eV~P~V~lrV~~~~~g~~i~s~~~~l~ 140 (233)
.++.++.+++.+-++|.|++....++ ....++.++++.|...+. .++.++-+.. ...++...+.+..+. ....
T Consensus 5 ~~~~i~a~~e~v~~~l~D~~~~~~w~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~---~~~~ 79 (144)
T cd05018 5 GEFRIPAPPEEVWAALNDPEVLARCIPGCESLEKIGPNEYEATVKLKVGPVKGTFK--GKVELSDLDPPESYT---ITGE 79 (144)
T ss_pred eEEEecCCHHHHHHHhcCHHHHHhhccchhhccccCCCeEEEEEEEEEccEEEEEE--EEEEEEecCCCcEEE---EEEE
Confidence 44556666788999999999865555 556688888888877653 1222222221 233443333322221 1222
Q ss_pred CCcchhcccccc-ceeeeEEEEecCCCCCCCcceEEEEEEEEEEEEcCccccccchHHHHHHHHHHHHHHHHHHHHHH
Q 026771 141 GSPIVVAQNDKF-DASMINRISCDSNSSNSEVQQLTSDAFIEVSIEVPFAFRAFPVEAIESTGTQVLDQILKLMLPRF 217 (233)
Q Consensus 141 G~~~v~~~n~~F-~l~l~~~L~~~~~~~~~~~t~l~g~~~L~V~v~lP~~~~llP~~lle~tG~~vL~~Il~~i~~rf 217 (233)
|.+. ..+ .....=.+.+. ++.|.|++.++++ +++++..+|..++......++++.++.|+.++
T Consensus 80 ~~~~-----~~~~~~~~~~~l~~~-----~~gT~v~~~~~~~----~~g~l~~l~~~~~~~~~~~~~~~~~~~l~~~~ 143 (144)
T cd05018 80 GKGG-----AGFVKGTARVTLEPD-----GGGTRLTYTADAQ----VGGKLAQLGSRLIDGAARKLINQFFENLASKI 143 (144)
T ss_pred EcCC-----CceEEEEEEEEEEec-----CCcEEEEEEEEEE----EccChhhhCHHHHHHHHHHHHHHHHHHHHHhh
Confidence 2211 111 22222234442 2457777777666 45677888999999999999999998888765
No 5
>COG3427 Carbon monoxide dehydrogenase subunit G, CoxG [Energy production and conversion]
Probab=96.19 E-value=0.21 Score=41.58 Aligned_cols=134 Identities=16% Similarity=0.166 Sum_probs=79.3
Q ss_pred EEeccCCccHHHhhcCCceeeeeCCc-cceeEecCCeEEEEee-cccEEeEEEeEEEEEEEEE-cCCceEEEEeeeeeeC
Q 026771 65 VRVRQLQRPLIEYMSLPASQYSVLDA-ERIERVDDNTFRCYVY-RFKFFAFEICPVLLVRVEE-QPNGCCIKLLSCKLEG 141 (233)
Q Consensus 65 v~v~e~~~~l~~YL~~P~~~~allDp-~~ie~Lgd~~fRl~v~-~l~ff~~eV~P~V~lrV~~-~~~g~~i~s~~~~l~G 141 (233)
-.|.-+++.+-++|.+|+.+.+|+.- +.+|..|| +|.+++. +++.+. -+=...++... .++. ...++.|
T Consensus 7 f~V~~p~e~Vw~~L~dpe~~a~ciPG~qs~e~~g~-e~~~~v~l~ig~l~--~~~~g~~~~~~v~~~~-----~~~~i~g 78 (146)
T COG3427 7 FRVAAPPEAVWEFLNDPEQVAACIPGVQSVETNGD-EYTAKVKLKIGPLK--GTFSGRVRFVNVDEPP-----RSITING 78 (146)
T ss_pred EEecCCHHHHHHHhcCHHHHHhhcCCcceeeecCC-eEEEEEEEeeccee--EEEEEEEEEccccCCC-----cEEEEEe
Confidence 34455577899999999998888865 66888888 8887764 222222 22222222222 1111 1244555
Q ss_pred CcchhccccccceeeeEEEEecCCCCCCCcceEEEEEEEEEEEEcCccccccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026771 142 SPIVVAQNDKFDASMINRISCDSNSSNSEVQQLTSDAFIEVSIEVPFAFRAFPVEAIESTGTQVLDQILKLMLPRFMSQV 221 (233)
Q Consensus 142 ~~~v~~~n~~F~l~l~~~L~~~~~~~~~~~t~l~g~~~L~V~v~lP~~~~llP~~lle~tG~~vL~~Il~~i~~rf~~qL 221 (233)
.+.- .-.-+..+..-.+.++ +.+|.|.|.++.++.. ++...|..+|+.+++.+..||-+.|
T Consensus 79 ~G~~--~~g~~~~~~~v~l~~~-----g~gt~v~w~~~~~~gg------------~laqlGsr~i~~~~~kli~~~~~~l 139 (146)
T COG3427 79 SGGG--AAGFADGTVDVQLEPS-----GEGTRVNWFADANVGG------------KLAQLGSRLIDSVARKLINRFFDCL 139 (146)
T ss_pred eccc--ccceeeeeeEEEEEEc-----CCCcEEEEEEEccccH------------HHHHHhHHHHHHHHHHHHHHHHHHH
Confidence 5410 1111123333335552 2449999999998753 5677788888888887777777666
Q ss_pred HHHh
Q 026771 222 SRSI 225 (233)
Q Consensus 222 ~~Dy 225 (233)
.+-.
T Consensus 140 ~~~l 143 (146)
T COG3427 140 SSEL 143 (146)
T ss_pred HHHH
Confidence 5543
No 6
>cd08861 OtcD1_ARO-CYC_like N-terminal and C-terminal aromatase/cyclase domains of Streptomyces rimosus OtcD1 and related domains. This family includes the N- and C- terminal aromatase/cyclase (ARO/CYC) domains of Streptomyces rimosus OtcD1 and related domains. It belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. ARO/CYC domains participate in the diversification of aromatic polyketides by promoting polyketide cyclization. They occur in two architectural forms, didomain and monodomain. Didomain aromatase/cyclases (ARO/CYCs), contain two ARO/CYC domains, and are associated with C7-C12 first ring cyclized polyketides. Streptomyces rimosus OtcD1 is a didomain ARO/CYC. The polyketide Oxytetracycline (OTC) is a broad spectrum antibiotic made by Streptomyces rimosus. The gene encoding OtcD1 is part of oxytetracycline (OTC) gene cluster. Disruption of this
Probab=90.80 E-value=3.8 Score=31.83 Aligned_cols=132 Identities=14% Similarity=-0.011 Sum_probs=66.4
Q ss_pred EEEeccCCccHHHhhcCCceeeeeCCc-cceeEec--CCeEEEEeecccEEeEEEeEEEEEEEEEcCCceEEEEeeeeee
Q 026771 64 SVRVRQLQRPLIEYMSLPASQYSVLDA-ERIERVD--DNTFRCYVYRFKFFAFEICPVLLVRVEEQPNGCCIKLLSCKLE 140 (233)
Q Consensus 64 ~v~v~e~~~~l~~YL~~P~~~~allDp-~~ie~Lg--d~~fRl~v~~l~ff~~eV~P~V~lrV~~~~~g~~i~s~~~~l~ 140 (233)
++.+..+...+=+|++|.++.-. +.| ..++.++ ++.-++.+-+.++-+....-+... ..++++-+|........
T Consensus 4 s~~i~ap~~~V~~~l~D~~~~p~-~~p~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~--~~~~~~~~i~~~~~~~~ 80 (142)
T cd08861 4 SVTVAAPAEDVYDLLADAERWPE-FLPTVHVERLELDGGVERLRMWATAFDGSVHTWTSRR--VLDPEGRRIVFRQEEPP 80 (142)
T ss_pred EEEEcCCHHHHHHHHHhHHhhhc-cCCCceEEEEEEcCCEEEEEEEEEcCCCcEEEEEEEE--EEcCCCCEEEEEEeeCC
Confidence 45666678889999999998544 444 3455443 343334433333333322222111 12222222322211111
Q ss_pred CCcchhccccccceeeeE--EEEecCCCCCCCcceEEEEEEEEEEEEcCccccccchHHHHHHHHHHHHHHHHHHHHHH
Q 026771 141 GSPIVVAQNDKFDASMIN--RISCDSNSSNSEVQQLTSDAFIEVSIEVPFAFRAFPVEAIESTGTQVLDQILKLMLPRF 217 (233)
Q Consensus 141 G~~~v~~~n~~F~l~l~~--~L~~~~~~~~~~~t~l~g~~~L~V~v~lP~~~~llP~~lle~tG~~vL~~Il~~i~~rf 217 (233)
| +| ..+.| .+.+. +.+.|.++++.+.+. +.++ .++..+++..-+..++..|+.++.+.
T Consensus 81 ~---------~~-~~~~g~w~~~~~----~~~~t~Vt~~~~~~~----~~~~-~~~~~~~~~~~~~~~~~~l~~lk~~~ 140 (142)
T cd08861 81 P---------PV-ASMSGEWRFEPL----GGGGTRVTLRHDFTL----GIDS-PEAVPWIRRALDRNSRAELAALRAAA 140 (142)
T ss_pred C---------Ch-hhheeEEEEEEC----CCCcEEEEEEEEEEE----CCCC-chhHHHHHHHHccccHHHHHHHHHHh
Confidence 1 11 11222 23441 123466666655553 3322 27788888888888888888888764
No 7
>cd08866 SRPBCC_11 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=88.49 E-value=10 Score=29.46 Aligned_cols=134 Identities=15% Similarity=0.104 Sum_probs=67.6
Q ss_pred EEEEeccCCccHHHhhcCCceeeee----CCccceeEecCCeEEE-EeecccEEeEEEeEEEEEEEEEcCC-ceEEEEee
Q 026771 63 ESVRVRQLQRPLIEYMSLPASQYSV----LDAERIERVDDNTFRC-YVYRFKFFAFEICPVLLVRVEEQPN-GCCIKLLS 136 (233)
Q Consensus 63 ~~v~v~e~~~~l~~YL~~P~~~~al----lDp~~ie~Lgd~~fRl-~v~~l~ff~~eV~P~V~lrV~~~~~-g~~i~s~~ 136 (233)
.++.++.+++.+=++|.|.++.... -.-..++.-+ +..+. ...+..++.+.+.=.+.+++...++ .-.++..
T Consensus 3 ~~~~i~a~~~~Vw~~l~D~~~~~~w~p~v~~~~~l~~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~i~~~- 80 (144)
T cd08866 3 ARVRVPAPPETVWAVLTDYDNLAEFIPNLAESRLLERNG-NRVVLEQTGKQGILFFKFEARVVLELREREEFPRELDFE- 80 (144)
T ss_pred EEEEECCCHHHHHHHHhChhhHHhhCcCceEEEEEEcCC-CEEEEEEeeeEEEEeeeeeEEEEEEEEEecCCCceEEEE-
Confidence 4566777777788888888763322 2222233323 33333 2244555543333344444443332 1122221
Q ss_pred eeeeCCcchhccccccceeeeEEEEecCCCCCCCcceEEEEEEEEEEEEcCccccccchHHHHHHHHHHHHHHHHHHHHH
Q 026771 137 CKLEGSPIVVAQNDKFDASMINRISCDSNSSNSEVQQLTSDAFIEVSIEVPFAFRAFPVEAIESTGTQVLDQILKLMLPR 216 (233)
Q Consensus 137 ~~l~G~~~v~~~n~~F~l~l~~~L~~~~~~~~~~~t~l~g~~~L~V~v~lP~~~~llP~~lle~tG~~vL~~Il~~i~~r 216 (233)
...|. . ..|..... +.+.. +++.|.++++++++-. ..+|..++.......+..++.+|+.+
T Consensus 81 -~~~g~-~-----~~~~g~w~--~~~~~---~~~~t~v~~~~~~~~~-------~~~p~~l~~~~~~~~~~~~l~~lr~~ 141 (144)
T cd08866 81 -MVEGD-F-----KRFEGSWR--LEPLA---DGGGTLLTYEVEVKPD-------FFAPVFLVEFVLRQDLPTNLLAIRAE 141 (144)
T ss_pred -EcCCc-h-----hceEEEEE--EEECC---CCCeEEEEEEEEEEeC-------CCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 11231 1 12222222 44421 1245777777666522 25677788888888888888887766
Q ss_pred H
Q 026771 217 F 217 (233)
Q Consensus 217 f 217 (233)
.
T Consensus 142 a 142 (144)
T cd08866 142 A 142 (144)
T ss_pred H
Confidence 4
No 8
>PF10604 Polyketide_cyc2: Polyketide cyclase / dehydrase and lipid transport; InterPro: IPR019587 This family contains polyketide cylcases/dehydrases which are enzymes involved in polyketide synthesis. It also includes other proteins of the START superfamily []. ; PDB: 3QRZ_C 3CNW_A 3P9V_A 3OQU_B 3NEF_B 3JRQ_B 3KAY_A 3JRS_A 3KDJ_A 3NMN_C ....
Probab=79.66 E-value=24 Score=26.59 Aligned_cols=129 Identities=10% Similarity=-0.036 Sum_probs=64.2
Q ss_pred EEEEEeccCCccHHHhhcCCceeeeeC-CccceeEec-CCeEE-EEeecccEEe-EEEeEEEEEEEEEcCCceEEEEeee
Q 026771 62 KESVRVRQLQRPLIEYMSLPASQYSVL-DAERIERVD-DNTFR-CYVYRFKFFA-FEICPVLLVRVEEQPNGCCIKLLSC 137 (233)
Q Consensus 62 ~~~v~v~e~~~~l~~YL~~P~~~~all-Dp~~ie~Lg-d~~fR-l~v~~l~ff~-~eV~P~V~lrV~~~~~g~~i~s~~~ 137 (233)
..++.|+.+++.+=+|+.++.....-. .-..++.++ ++.+. ..+. ..+ .++.-.+.- .++++..+.....
T Consensus 5 ~~~~~v~a~~e~V~~~l~d~~~~~~w~~~~~~~~~~~~~~~~~~~~~~---~~g~~~~~~~i~~---~~~~~~~~~~~~~ 78 (139)
T PF10604_consen 5 EVSIEVPAPPEAVWDLLSDPENWPRWWPGVKSVELLSGGGPGTERTVR---VAGRGTVREEITE---YDPEPRRITWRFV 78 (139)
T ss_dssp EEEEEESS-HHHHHHHHTTTTGGGGTSTTEEEEEEEEECSTEEEEEEE---ECSCSEEEEEEEE---EETTTTEEEEEEE
T ss_pred EEEEEECCCHHHHHHHHhChhhhhhhhhceEEEEEccccccceeEEEE---eccccceeEEEEE---ecCCCcEEEEEEE
Confidence 345566667889999999999855433 234566665 55533 2222 222 333333222 1222333222211
Q ss_pred eeeCCcchhccccccceeeeEEEEecCCCCCCCcceEEEEEEEEEEEEcCccccccchHHHHHHHHHHHHHHHHHHHHH
Q 026771 138 KLEGSPIVVAQNDKFDASMINRISCDSNSSNSEVQQLTSDAFIEVSIEVPFAFRAFPVEAIESTGTQVLDQILKLMLPR 216 (233)
Q Consensus 138 ~l~G~~~v~~~n~~F~l~l~~~L~~~~~~~~~~~t~l~g~~~L~V~v~lP~~~~llP~~lle~tG~~vL~~Il~~i~~r 216 (233)
..+. .....+-.+.+.. ++|.+.+..++.. ++...++..++...=...+++.++.|+..
T Consensus 79 ---~~~~-------~~~~~~~~~~~~~-----~gt~v~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ 137 (139)
T PF10604_consen 79 ---PSGF-------TNGTGRWRFEPVG-----DGTRVTWTVEFEP-----GLPGWLAGPLLRPAVKRIVREALENLKRA 137 (139)
T ss_dssp ---SSSS-------CEEEEEEEEEEET-----TTEEEEEEEEEEE-----SCTTSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---ecce-------eEEEEEEEEEEcC-----CCEEEEEEEEEEE-----eccchhhHHHHHHHHHHHHHHHHHHHhcc
Confidence 2222 1122222344422 3377887777775 44455566666655555666666665544
No 9
>cd08862 SRPBCC_Smu440-like Ligand-binding SRPBCC domain of Streptococcus mutans Smu.440 and related proteins. This family includes the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of Streptococcus mutans Smu.440 and related proteins. This domain belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Streptococcus mutans is a dental pathogen, and the leading cause of dental caries. In this pathogen, the gene encoding Smu.440 is in the same operon as the gene encoding SMU.441, a member of the MarR protein family of transcriptional regulators involved in multiple antibiotic resistance. It has been suggested that SMU.440 is involved in polyketide-like antibiotic resistance.
Probab=77.39 E-value=29 Score=26.30 Aligned_cols=45 Identities=4% Similarity=-0.012 Sum_probs=30.6
Q ss_pred EEEEEeccCCccHHHhhcCCceeeeeCCc-cceeEecCC-----eEEEEee
Q 026771 62 KESVRVRQLQRPLIEYMSLPASQYSVLDA-ERIERVDDN-----TFRCYVY 106 (233)
Q Consensus 62 ~~~v~v~e~~~~l~~YL~~P~~~~allDp-~~ie~Lgd~-----~fRl~v~ 106 (233)
+.++.+..+.+.+=+|+.+++........ ..++.++++ .|++..+
T Consensus 4 ~~~~~i~Ap~~~Vw~~~~d~~~~~~w~~~~~~~~~~~~~~~~G~~~~~~~~ 54 (138)
T cd08862 4 EATIVIDAPPERVWAVLTDVENWPAWTPSVETVRLEGPPPAVGSSFKMKPP 54 (138)
T ss_pred EEEEEEcCCHHHHHHHHHhhhhcccccCcceEEEEecCCCCCCcEEEEecC
Confidence 34566777788999999998876544432 456666655 7777655
No 10
>cd07813 COQ10p_like Coenzyme Q-binding protein COQ10p and similar proteins. Coenzyme Q-binding protein COQ10p and similar proteins. COQ10p is a hydrophobic protein located in the inner membrane of mitochondria that binds coenzyme Q (CoQ), also called ubiquinone, which is an essential electron carrier of the respiratory chain. Deletion of the gene encoding COQ10p (COQ10 or YOL008W) in Saccharomyces cerevisiae results in respiratory defect because of the inability to oxidize NADH and succinate. COQ10p may function in the delivery of CoQ (Q6 in budding yeast) to its proper location for electron transport. The human homolog, called Q-binding protein COQ10 homolog A (COQ10A), is able to fully complement for the absence of COQ10p in fission yeast. Human COQ10A also has a splice variant COQ10B. COQ10p belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and the
Probab=70.27 E-value=48 Score=25.58 Aligned_cols=127 Identities=11% Similarity=0.035 Sum_probs=59.9
Q ss_pred EEEEeccCCccHHHhhcCCceee----eeCCccceeEecCCeEEEEeecccEEeEEEeEEEEEEEEEcCCceEEEEeeee
Q 026771 63 ESVRVRQLQRPLIEYMSLPASQY----SVLDAERIERVDDNTFRCYVYRFKFFAFEICPVLLVRVEEQPNGCCIKLLSCK 138 (233)
Q Consensus 63 ~~v~v~e~~~~l~~YL~~P~~~~----allDp~~ie~Lgd~~fRl~v~~l~ff~~eV~P~V~lrV~~~~~g~~i~s~~~~ 138 (233)
.++.++.+.+.+=+++.|.++.. -|-+-..+++-+ +.++.++ .+++.++..+-+..+++.+ +. .|....
T Consensus 3 ~s~~i~ap~~~v~~~i~D~~~~~~~~p~~~~~~vl~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~--~~-~i~~~~-- 75 (138)
T cd07813 3 KSRLVPYSAEQMFDLVADVERYPEFLPWCTASRVLERDE-DELEAEL-TVGFGGIRESFTSRVTLVP--PE-SIEAEL-- 75 (138)
T ss_pred EEEEcCCCHHHHHHHHHHHHhhhhhcCCccccEEEEcCC-CEEEEEE-EEeeccccEEEEEEEEecC--CC-EEEEEe--
Confidence 34555656667777777776533 333333344433 4455543 3445454444444444332 22 332111
Q ss_pred eeCCcchhccccccceeeeE--EEEecCCCCCCCcceEEEEEEEEEEEEcCccccccchHHHHHHHHHHHHHHHHHHHHH
Q 026771 139 LEGSPIVVAQNDKFDASMIN--RISCDSNSSNSEVQQLTSDAFIEVSIEVPFAFRAFPVEAIESTGTQVLDQILKLMLPR 216 (233)
Q Consensus 139 l~G~~~v~~~n~~F~l~l~~--~L~~~~~~~~~~~t~l~g~~~L~V~v~lP~~~~llP~~lle~tG~~vL~~Il~~i~~r 216 (233)
..| .| -.+.| .+.+. +++.|.++.+++++.. . .+|..++....+.....++..++.|
T Consensus 76 ~~g---------~~-~~~~g~w~~~p~----~~~~T~v~~~~~~~~~----~---~l~~~l~~~~~~~~~~~~l~~f~~~ 134 (138)
T cd07813 76 VDG---------PF-KHLEGEWRFKPL----GENACKVEFDLEFEFK----S---RLLEALAGLVFDEVAKKMVDAFEKR 134 (138)
T ss_pred cCC---------Ch-hhceeEEEEEEC----CCCCEEEEEEEEEEEC----C---HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 122 22 11223 34442 2245677666665543 2 2445555555555566666665555
Q ss_pred H
Q 026771 217 F 217 (233)
Q Consensus 217 f 217 (233)
+
T Consensus 135 ~ 135 (138)
T cd07813 135 A 135 (138)
T ss_pred H
Confidence 4
No 11
>cd08904 START_STARD6-like Lipid-binding START domain of mammalian STARD6 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD6 and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD6 is expressed in male germ cells of normal rats, and in the steroidogenic Leydig cells of perinatal hypothyroid testes. It may play a pivotal role in the steroidogenesis as well as in the spermatogenesis of normal rats. STARD6 has also been detected in the rat nervous system, and may participate in neurosteroid synthesis.
Probab=66.77 E-value=84 Score=27.27 Aligned_cols=81 Identities=17% Similarity=0.223 Sum_probs=52.1
Q ss_pred EEEEEeccCCccHHHhhcCCce-e---eeeCCccceeEecCCeEEEEeecccEEeEEEeE--EEEEEEEEc-CCce-EEE
Q 026771 62 KESVRVRQLQRPLIEYMSLPAS-Q---YSVLDAERIERVDDNTFRCYVYRFKFFAFEICP--VLLVRVEEQ-PNGC-CIK 133 (233)
Q Consensus 62 ~~~v~v~e~~~~l~~YL~~P~~-~---~allDp~~ie~Lgd~~fRl~v~~l~ff~~eV~P--~V~lrV~~~-~~g~-~i~ 133 (233)
+...-++...+.+-+||.++.. . ..|...+-||+++++++.++-..-++.+.-|-| .|++|-|.. +++. .+.
T Consensus 49 k~egvi~~~~e~v~~~l~~~e~r~~Wd~~~~~~~iie~Id~~T~I~~~~~~~~~~~~vspRDfV~vr~~~r~~~~~~ii~ 128 (204)
T cd08904 49 RVEGIIPESPAKLIQFMYQPEHRIKWDKSLQVYKMLQRIDSDTFICHTITQSFAMGSISPRDFVDLVHIKRYEGNMNIVS 128 (204)
T ss_pred EEEEEecCCHHHHHHHHhccchhhhhcccccceeeEEEeCCCcEEEEEecccccCCcccCceEEEEEEEEEeCCCEEEEE
Confidence 4556677777889999998873 2 344555779999999998875544433222544 577777654 5554 444
Q ss_pred EeeeeeeCC
Q 026771 134 LLSCKLEGS 142 (233)
Q Consensus 134 s~~~~l~G~ 142 (233)
..+.+.+..
T Consensus 129 ~~sv~Hp~~ 137 (204)
T cd08904 129 SVSVEYPQC 137 (204)
T ss_pred EEecccCCC
Confidence 555555553
No 12
>PF11485 DUF3211: Protein of unknown function (DUF3211); InterPro: IPR021578 This archaeal family of proteins has no known function. ; PDB: 2EJX_A.
Probab=58.20 E-value=13 Score=30.73 Aligned_cols=48 Identities=21% Similarity=0.283 Sum_probs=35.4
Q ss_pred CCccHHHhhcCCce-eeeeCCc-cceeEecCCeEEEEeecccEEeEEEeEEE
Q 026771 70 LQRPLIEYMSLPAS-QYSVLDA-ERIERVDDNTFRCYVYRFKFFAFEICPVL 119 (233)
Q Consensus 70 ~~~~l~~YL~~P~~-~~allDp-~~ie~Lgd~~fRl~v~~l~ff~~eV~P~V 119 (233)
..+.|..+|+||.= +..++.+ +.++ .+++.|++... +..+.+++.=.+
T Consensus 12 ~~e~v~~ILSDP~F~lp~l~p~ik~v~-~~~~sF~~~g~-~~~~~~~~~G~v 61 (136)
T PF11485_consen 12 DIEVVLTILSDPEFVLPRLFPPIKSVK-VEENSFRAEGK-FGGFPFEMKGNV 61 (136)
T ss_dssp -HHHHHHHHT-HHHHHHHHSTTEEEEE--STTEEEEEEE-ETTEEEEEEEEE
T ss_pred ChHheEEEecCCccEecccCCceEEEE-ecCCEEEEEEE-EeeEEEEEEEEE
Confidence 35689999999995 9999999 7788 99999999987 544555544333
No 13
>cd07824 SRPBCC_6 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=56.54 E-value=22 Score=28.11 Aligned_cols=40 Identities=8% Similarity=-0.036 Sum_probs=28.9
Q ss_pred EEEEEEEEEcCc----cccccchHHHHHHHHHHHHHHHHHHHHH
Q 026771 177 DAFIEVSIEVPF----AFRAFPVEAIESTGTQVLDQILKLMLPR 216 (233)
Q Consensus 177 ~~~L~V~v~lP~----~~~llP~~lle~tG~~vL~~Il~~i~~r 216 (233)
.+.+...++.+. .+..+...++....+.+|..++..++.+
T Consensus 102 ~vt~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~L~~~ 145 (146)
T cd07824 102 VVRYDWEVRTTKPWMNLLAPLARPVFRWNHRRVMRAGEKGLARR 145 (146)
T ss_pred EEEEEEEEEcCHHHHHhhhHhhhhHHHHhHHHHHHhHHHHHHhh
Confidence 345555666665 5777888888888888888888887766
No 14
>cd08869 START_RhoGAP C-terminal lipid-binding START domain of mammalian STARD8, -12, -13 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD8 (also known as deleted in liver cancer 3/DLC3, and Arhgap38), STARD12 (also known as DLC-1, Arhgap7, and p122-RhoGAP), and STARD13 (also known as DLC-2, Arhgap37, and SDCCAG13). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subfamily also have a RhoGAP domain. Some, including STARD12, -and -13, also have an N-terminal SAM (sterile alpha motif) domain; these have a SAM-RhoGAP-START domain organization. This subfamily is involved in cancer development. A large spectrum of cancers have dysregul
Probab=51.79 E-value=1.5e+02 Score=25.12 Aligned_cols=138 Identities=14% Similarity=0.074 Sum_probs=70.1
Q ss_pred EEEeccCCccHHHhhcCCc-e-eeeeCCccceeEecCCeEEEEee-cccEEeEEEeEEEEEEEEE--cCCc-eEEEEeee
Q 026771 64 SVRVRQLQRPLIEYMSLPA-S-QYSVLDAERIERVDDNTFRCYVY-RFKFFAFEICPVLLVRVEE--QPNG-CCIKLLSC 137 (233)
Q Consensus 64 ~v~v~e~~~~l~~YL~~P~-~-~~allDp~~ie~Lgd~~fRl~v~-~l~ff~~eV~P~V~lrV~~--~~~g-~~i~s~~~ 137 (233)
...|+...+.+-+-|-+.. . ...+.+.+.|++++++++.++.. ...+ .+.=.=.|.++.+- .++| +.|.+.+.
T Consensus 49 ~~~v~a~~~~v~~~l~d~r~~Wd~~~~~~~vie~id~~~~i~y~~~~~p~-pv~~RDfV~~r~~~~~~~~g~~~i~~~Sv 127 (197)
T cd08869 49 STEVEAPPEEVLQRILRERHLWDDDLLQWKVVETLDEDTEVYQYVTNSMA-PHPTRDYVVLRTWRTDLPKGACVLVETSV 127 (197)
T ss_pred EEEeCCCHHHHHHHHHHHHhccchhhheEEEEEEecCCcEEEEEEeeCCC-CCCCceEEEEEEEEecCCCCcEEEEEECC
Confidence 3444544444444333333 2 56677778899999877755432 1111 12223345555555 2333 45555554
Q ss_pred ee-eCC--cchhccccccceeeeEEEEecCCCCCCCcceEEEEEEEEEEEEcCccccccchHHHHHHHHHHHHHHHHHHH
Q 026771 138 KL-EGS--PIVVAQNDKFDASMINRISCDSNSSNSEVQQLTSDAFIEVSIEVPFAFRAFPVEAIESTGTQVLDQILKLML 214 (233)
Q Consensus 138 ~l-~G~--~~v~~~n~~F~l~l~~~L~~~~~~~~~~~t~l~g~~~L~V~v~lP~~~~llP~~lle~tG~~vL~~Il~~i~ 214 (233)
.. ... ++|. -+.....=.++|. +++.+.++.-+.+..+-.+|.++ .-.+| .+|-.+|..|.
T Consensus 128 ~~~~~~p~g~VR----~~~~~~g~~i~p~----~~~~t~vty~~~~Dp~G~iP~wl-------~N~~~-~~~~~~~~~l~ 191 (197)
T cd08869 128 EHTEPVPLGGVR----AVVLASRYLIEPC----GSGKSRVTHICRVDLRGRSPEWY-------NKVYG-HLCARELLRIR 191 (197)
T ss_pred cCCCCCCCCCEE----EEEEeeeEEEEEC----CCCCeEEEEEEEECCCCCCCcee-------ecchH-hHHHHHHHHHH
Confidence 33 122 2221 1111111134442 23568888888888777777655 33444 66667776666
Q ss_pred HHHH
Q 026771 215 PRFM 218 (233)
Q Consensus 215 ~rf~ 218 (233)
.-|.
T Consensus 192 ~~~~ 195 (197)
T cd08869 192 DSFR 195 (197)
T ss_pred hhcc
Confidence 5553
No 15
>cd07817 SRPBCC_8 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=41.36 E-value=1.5e+02 Score=22.23 Aligned_cols=44 Identities=14% Similarity=0.145 Sum_probs=29.0
Q ss_pred EEEEeccCCccHHHhhcCCceeeeeCCc-cceeEecCCeEEEEee
Q 026771 63 ESVRVRQLQRPLIEYMSLPASQYSVLDA-ERIERVDDNTFRCYVY 106 (233)
Q Consensus 63 ~~v~v~e~~~~l~~YL~~P~~~~allDp-~~ie~Lgd~~fRl~v~ 106 (233)
.++.+..+.+.+-+|+.++.....-... ..++.+++..+++++.
T Consensus 4 ~~i~I~ap~e~V~~~~~D~~~~~~w~~~~~~~~~~~~~~~~~~~~ 48 (139)
T cd07817 4 KSITVNVPVEEVYDFWRDFENLPRFMSHVESVEQLDDTRSHWKAK 48 (139)
T ss_pred EEEEeCCCHHHHHHHHhChhhhHHHhhhhcEEEEcCCCceEEEEe
Confidence 4566666778899999999875443322 3466666666666663
No 16
>COG0694 Thioredoxin-like proteins and domains [Posttranslational modification, protein turnover, chaperones]
Probab=35.33 E-value=12 Score=28.87 Aligned_cols=17 Identities=18% Similarity=0.333 Sum_probs=13.5
Q ss_pred cceecCCCcccceeccc
Q 026771 3 MALNCSSSTCITFSYNK 19 (233)
Q Consensus 3 ~~~~~~~~~~~~~~~~~ 19 (233)
+--+|++|+.|++++..
T Consensus 49 l~GaC~gC~sS~~TLk~ 65 (93)
T COG0694 49 LGGACSGCPSSTVTLKN 65 (93)
T ss_pred eCCcCCCCcccHHHHHH
Confidence 34589999999988754
No 17
>cd08865 SRPBCC_10 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=29.32 E-value=2.4e+02 Score=20.85 Aligned_cols=43 Identities=9% Similarity=0.128 Sum_probs=25.6
Q ss_pred EEEeccCCccHHHhhcCCceeeeeCCc-cceeEecC------CeEEEEee
Q 026771 64 SVRVRQLQRPLIEYMSLPASQYSVLDA-ERIERVDD------NTFRCYVY 106 (233)
Q Consensus 64 ~v~v~e~~~~l~~YL~~P~~~~allDp-~~ie~Lgd------~~fRl~v~ 106 (233)
++.++.+...+=++|.+++......+. ..++.+++ .+|++.+.
T Consensus 4 ~~~i~ap~~~Vw~~l~d~~~~~~w~~~~~~~~~~~~~~~~~g~~~~~~~~ 53 (140)
T cd08865 4 SIVIERPVEEVFAYLADFENAPEWDPGVVEVEKITDGPVGVGTRYHQVRK 53 (140)
T ss_pred EEEEcCCHHHHHHHHHCccchhhhccCceEEEEcCCCCCcCccEEEEEEE
Confidence 445555677888888888875444433 24555543 36666543
No 18
>cd08908 START_STARD12-like C-terminal lipid-binding START domain of mammalian STARD12 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD12 (also known as DLC-1, Arhgap7, and p122-RhoGAP) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subgroup also have an N-terminal SAM (sterile alpha motif) domain and a RhoGAP domain, and have a SAM-RhoGAP-START domain organization. The precise function of the START domain in this subgroup is unclear.
Probab=27.64 E-value=4.1e+02 Score=23.06 Aligned_cols=138 Identities=16% Similarity=0.173 Sum_probs=68.8
Q ss_pred EEEEeccCCccHH-HhhcCCce-eeeeCCccceeEecCCeEEEEee-cccEEeEEEeEEEEEEEEEc--CCc-eEEEEee
Q 026771 63 ESVRVRQLQRPLI-EYMSLPAS-QYSVLDAERIERVDDNTFRCYVY-RFKFFAFEICPVLLVRVEEQ--PNG-CCIKLLS 136 (233)
Q Consensus 63 ~~v~v~e~~~~l~-~YL~~P~~-~~allDp~~ie~Lgd~~fRl~v~-~l~ff~~eV~P~V~lrV~~~--~~g-~~i~s~~ 136 (233)
+.+.++..+..+- .-+++... ...|.+...||+++++++.++.. ..- .-+.-.=.|.+|.|.. ++| +.|.+.+
T Consensus 56 ~~~~i~a~~~~vl~~lld~~~~Wd~~~~e~~vIe~ld~~~~I~Yy~~~~P-wP~~~RD~V~~Rs~~~~~~~g~~~I~~~S 134 (204)
T cd08908 56 TTIEVPAAPEEILKRLLKEQHLWDVDLLDSKVIEILDSQTEIYQYVQNSM-APHPARDYVVLRTWRTNLPKGACALLATS 134 (204)
T ss_pred EEEEeCCCHHHHHHHHHhhHHHHHHHhhheEeeEecCCCceEEEEEccCC-CCCCCcEEEEEEEEEEeCCCCeEEEEEee
Confidence 3455555554443 44444223 56677778899999988744442 111 1123333456666632 334 5555554
Q ss_pred eeeeCCcchhcccccccee--eeE-EEEecCCCCCCCcceEEEEEEEEEEEEcCccccccchHHHHHHHHHHHHHHHHHH
Q 026771 137 CKLEGSPIVVAQNDKFDAS--MIN-RISCDSNSSNSEVQQLTSDAFIEVSIEVPFAFRAFPVEAIESTGTQVLDQILKLM 213 (233)
Q Consensus 137 ~~l~G~~~v~~~n~~F~l~--l~~-~L~~~~~~~~~~~t~l~g~~~L~V~v~lP~~~~llP~~lle~tG~~vL~~Il~~i 213 (233)
.+-.-.+. + ..++. ..+ .+.| .+++.+.++-.+.+.-+-++|. .++-..| .++..=|.+|
T Consensus 135 v~h~~~P~----~-~VR~~~~~~~w~i~P----~g~g~t~vtyi~~~DPgG~iP~-------W~~N~~g-~~~~~~~~~~ 197 (204)
T cd08908 135 VDHDRAPV----A-GVRVNVLLSRYLIEP----CGSGKSKLTYMCRIDLRGHMPE-------WYTKSFG-HLCAAEVVKI 197 (204)
T ss_pred cCcccCCc----C-ceEEEEEeeEEEEEE----CCCCcEEEEEEEEeCCCCCCcH-------HHHhhHH-HHHHHHHHHH
Confidence 44333331 1 11111 111 3344 1235567776666665555554 4444444 5566666666
Q ss_pred HHHHH
Q 026771 214 LPRFM 218 (233)
Q Consensus 214 ~~rf~ 218 (233)
..-|.
T Consensus 198 r~sf~ 202 (204)
T cd08908 198 RDSFS 202 (204)
T ss_pred Hhhcc
Confidence 65553
No 19
>smart00243 GAS2 Growth-Arrest-Specific Protein 2 Domain. GROWTH-ARREST-SPECIFIC PROTEIN 2 Domain
Probab=24.33 E-value=1.1e+02 Score=22.64 Aligned_cols=23 Identities=9% Similarity=0.173 Sum_probs=18.8
Q ss_pred eeeeCCccceeEecCCeEEEEee
Q 026771 84 QYSVLDAERIERVDDNTFRCYVY 106 (233)
Q Consensus 84 ~~allDp~~ie~Lgd~~fRl~v~ 106 (233)
.+.|-.+=.++++++|.||+--.
T Consensus 13 ~C~C~~~f~i~ri~eGkYr~Gd~ 35 (73)
T smart00243 13 DCKCPTKFQVEKISEGKYRFGDS 35 (73)
T ss_pred cCCCCCCcceEEecCCceEEcCC
Confidence 46777888999999999996543
No 20
>PRK02899 adaptor protein; Provisional
Probab=22.51 E-value=64 Score=27.89 Aligned_cols=47 Identities=19% Similarity=0.252 Sum_probs=33.9
Q ss_pred cceeEecCCeEEEEeeccc----------E---------------------EeEEEeEEEEEEEEEcC-CceEEEEeee
Q 026771 91 ERIERVDDNTFRCYVYRFK----------F---------------------FAFEICPVLLVRVEEQP-NGCCIKLLSC 137 (233)
Q Consensus 91 ~~ie~Lgd~~fRl~v~~l~----------f---------------------f~~eV~P~V~lrV~~~~-~g~~i~s~~~ 137 (233)
|+||++++|+.||++..-. + ++|+..=-+.++|.|-+ +|+.+-....
T Consensus 1 MkiErInentIrv~it~~DL~eRgi~~~dL~~n~~k~e~lF~~mm~Ea~~e~~F~~~~pl~~qv~p~~~~gl~l~ITK~ 79 (197)
T PRK02899 1 MRLERLNYNKIKIFLTFDDLSERGLTKEDLWRDAPKVHQLFRDMMQEANKELGFEADGPIAVEVFSLQAQGMVVIVTKE 79 (197)
T ss_pred CCeeEccCCeEEEEEeHHHHHHcCCCHHHHhcCcHHHHHHHHHHHHHhhhccCcccCCeEEEEEEecCCCcEEEEEEec
Confidence 7899999999999986322 1 23655544889999987 8886555544
No 21
>PF03364 Polyketide_cyc: Polyketide cyclase / dehydrase and lipid transport; InterPro: IPR005031 Members of this family of enzymes from Streptomyces spp. are involved in polyketide (linear poly-beta-ketones) synthesis.; PDB: 1T17_A 3GGN_B 2KCZ_A 2D4R_B 2REZ_A 2RES_A 3TVQ_A 2RER_A 2KF2_A 3TL1_A ....
Probab=20.00 E-value=3.6e+02 Score=20.08 Aligned_cols=23 Identities=17% Similarity=0.069 Sum_probs=17.4
Q ss_pred ccchHHHHHHHHHHHHHHHHHHH
Q 026771 192 AFPVEAIESTGTQVLDQILKLML 214 (233)
Q Consensus 192 llP~~lle~tG~~vL~~Il~~i~ 214 (233)
.+|..++...++..+.+.++.|+
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~~~~ 130 (130)
T PF03364_consen 108 PLPGFLARQFFRRDLRQMLEAFR 130 (130)
T ss_dssp SSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHHHHhhC
Confidence 55888888888888888777764
Done!