Query 026771
Match_columns 233
No_of_seqs 117 out of 162
Neff 5.7
Searched_HMMs 29240
Date Mon Mar 25 21:45:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026771.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/026771hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3p9v_A Uncharacterized protein 96.1 0.11 3.8E-06 41.2 12.4 148 55-225 5-153 (161)
2 2ns9_A Hypothetical protein AP 95.9 0.41 1.4E-05 36.6 15.1 138 61-217 15-154 (157)
3 2pcs_A Conserved protein; stru 95.9 0.4 1.4E-05 37.1 14.5 141 63-220 7-149 (162)
4 3nqn_A Uncharacterized protein 77.2 28 0.00094 28.3 13.3 139 56-225 3-147 (158)
5 1t17_A Conserved hypothetical 75.1 24 0.00081 26.5 13.4 133 62-225 5-146 (148)
6 1xn5_A BH1534 unknown conserve 57.1 22 0.00075 26.8 5.8 44 62-105 8-51 (146)
7 3ggn_A Uncharacterized protein 45.9 95 0.0032 23.4 11.6 45 63-107 8-53 (155)
8 2l8o_A Uncharacterized protein 41.3 45 0.0015 25.0 5.3 44 63-106 6-57 (144)
9 2lgh_A Uncharacterized protein 39.1 59 0.002 24.3 5.7 44 63-106 5-56 (144)
10 1xn6_A Hypothetical protein BC 37.4 36 0.0012 25.2 4.1 43 63-105 12-54 (143)
11 2nn5_A Hypothetical protein EF 37.3 50 0.0017 26.3 5.2 46 62-107 39-85 (184)
12 3q6a_A Uncharacterized protein 35.9 87 0.003 22.8 6.1 47 63-109 5-52 (135)
13 2lcg_A Uncharacterized protein 35.5 78 0.0027 23.3 5.8 45 63-107 5-57 (142)
14 2k5g_A Uncharacterized protein 30.2 1.3E+02 0.0046 23.7 6.7 45 62-106 22-66 (191)
15 2kew_A Uncharacterized protein 29.7 27 0.00092 26.5 2.2 43 63-105 14-56 (152)
16 2ejx_A ST0812; arcaea, unknown 27.5 57 0.0019 25.9 3.8 54 65-119 11-66 (139)
17 2qpv_A Uncharacterized protein 26.2 2.3E+02 0.0078 22.0 11.6 49 61-109 29-78 (156)
18 3pu2_A Uncharacterized protein 20.4 2.8E+02 0.0097 20.9 7.0 43 64-106 18-67 (164)
No 1
>3p9v_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.78A {Marinobacter aquaeolei}
Probab=96.10 E-value=0.11 Score=41.20 Aligned_cols=148 Identities=8% Similarity=0.146 Sum_probs=81.2
Q ss_pred eeEEEEEEEEEEeccCCccHHHhhcCCceeeeeCCc-cceeEecCCeEEEEeecccEEeEEEeEEEEEEEEEcCCceEEE
Q 026771 55 ARFVARRKESVRVRQLQRPLIEYMSLPASQYSVLDA-ERIERVDDNTFRCYVYRFKFFAFEICPVLLVRVEEQPNGCCIK 133 (233)
Q Consensus 55 ~~F~As~~~~v~v~e~~~~l~~YL~~P~~~~allDp-~~ie~Lgd~~fRl~v~~l~ff~~eV~P~V~lrV~~~~~g~~i~ 133 (233)
+++..+++.. |+.+++.+=+++.|.++.-++... .-.+..++|.|+..+..+++-+..+.=....++..++++.+|.
T Consensus 5 ~~i~v~~s~~--I~ap~e~v~~lv~Dve~w~~~yp~~~p~~~~~~~~~~~~~a~l~vg~~~~~~~~~s~~~~~~~~~~I~ 82 (161)
T 3p9v_A 5 VSIELNRDLE--IPASYDEVFDLLADVPKSASHFPKVDKLVDLGNNAYRWEMEKVGVDKHAIQSVYACTYHADKEAGKIT 82 (161)
T ss_dssp EEEEEEEEEE--ESSCHHHHHHHHTCHHHHHTTSTTEEEEEEEETTEEEEEECCBSSGGGCBCCEEEEEEEEETTTTEEE
T ss_pred EEEEEEEEEE--EcCCHHHHHHHHhChhhhHhhCCCeEEEEEcCCCceEEEEEEEeeeeEEEEEEEEEEEEEcCCCCEEE
Confidence 3444454444 444566777777777762222211 2236778887777664444333333223344555554333333
Q ss_pred EeeeeeeCCcchhccccccceeeeEEEEecCCCCCCCcceEEEEEEEEEEEEcCccccccchHHHHHHHHHHHHHHHHHH
Q 026771 134 LLSCKLEGSPIVVAQNDKFDASMINRISCDSNSSNSEVQQLTSDAFIEVSIEVPFAFRAFPVEAIESTGTQVLDQILKLM 213 (233)
Q Consensus 134 s~~~~l~G~~~v~~~n~~F~l~l~~~L~~~~~~~~~~~t~l~g~~~L~V~v~lP~~~~llP~~lle~tG~~vL~~Il~~i 213 (233)
.... .| .|.-.+.|.-+-.+ .+++.|.|++.++.+..+.+++. ++.+...+++.+.++|
T Consensus 83 ~~~~--~g---------~~~~~l~g~w~f~p--~~~g~t~V~~~~~~e~~~pl~~l--------l~~~~~~~~~~~~~~~ 141 (161)
T 3p9v_A 83 WSPI--KG---------EGNGVVSGSWTLSA--KGDNATAVKFQTSAELTVPLPSL--------LKLAISPVIKHEFNSL 141 (161)
T ss_dssp EEEC--TT---------STTEEEEEEEEEEE--SSSSCEEEEEEEEEEEEECSCGG--------GHHHHHHHHHHHHHHH
T ss_pred EEEe--cC---------ccceeEEEEEEEEE--CCCCeEEEEEEEEEEEcCcchHH--------HHHHHHHHHHHHHHHH
Confidence 3211 12 34344555333322 12345788888887776655553 4667777777777888
Q ss_pred HHHHHHHHHHHh
Q 026771 214 LPRFMSQVSRSI 225 (233)
Q Consensus 214 ~~rf~~qL~~Dy 225 (233)
...|...+.+=|
T Consensus 142 v~af~~ra~~~~ 153 (161)
T 3p9v_A 142 VDTYMANLKKAF 153 (161)
T ss_dssp HHHHHHHHHTTT
T ss_pred HHHHHHHHHHHH
Confidence 877877777655
No 2
>2ns9_A Hypothetical protein APE2225; uncharacterized conserved protein, structural genomics, PSI, structure initiative; 1.80A {Aeropyrum pernix} SCOP: d.129.3.10
Probab=95.89 E-value=0.41 Score=36.56 Aligned_cols=138 Identities=9% Similarity=0.077 Sum_probs=76.3
Q ss_pred EEEEEEeccCCccHHHhhcCCceeeeeCCc-cceeEecCCeEEEEee-cccEEeEEEeEEEEEEEEEcCCceEEEEeeee
Q 026771 61 RKESVRVRQLQRPLIEYMSLPASQYSVLDA-ERIERVDDNTFRCYVY-RFKFFAFEICPVLLVRVEEQPNGCCIKLLSCK 138 (233)
Q Consensus 61 ~~~~v~v~e~~~~l~~YL~~P~~~~allDp-~~ie~Lgd~~fRl~v~-~l~ff~~eV~P~V~lrV~~~~~g~~i~s~~~~ 138 (233)
-..++.++.+.+.+=+++.+|+.....+.. ..++ ++++.|+..+. +.+.+.....-. +++...+.+-++... ..
T Consensus 15 i~~~~~i~ap~e~Vw~~l~D~~~~~~w~p~~~~~~-~~~~~~~~~~~~~~g~~~~~~~~~--~~~~~~~~~~~i~~~-~~ 90 (157)
T 2ns9_A 15 YEGSFEVSKTPEEVFEFLTDPKRFSRAFPGFKSVE-VEDGSFTIELRLSLGPLRGDARVR--ASFEDLEKPSKATVK-GS 90 (157)
T ss_dssp EEEEEEESSCHHHHHHHHTCHHHHGGGSTTEEEEE-EETTEEEEEEEEESSSSEEEEEEE--EEEEEEETTTEEEEE-EE
T ss_pred EeeEEEEcCCHHHHHHHHcCHHHHHhhCCCceEEE-ECCCEEEEEEEEEEcceeEEEEEE--EEEEecCCCcEEEEE-EE
Confidence 345566677788899999999875555533 4566 78888888753 233233333333 333221111122221 12
Q ss_pred eeCCcchhccccccceeeeEEEEecCCCCCCCcceEEEEEEEEEEEEcCccccccchHHHHHHHHHHHHHHHHHHHHHH
Q 026771 139 LEGSPIVVAQNDKFDASMINRISCDSNSSNSEVQQLTSDAFIEVSIEVPFAFRAFPVEAIESTGTQVLDQILKLMLPRF 217 (233)
Q Consensus 139 l~G~~~v~~~n~~F~l~l~~~L~~~~~~~~~~~t~l~g~~~L~V~v~lP~~~~llP~~lle~tG~~vL~~Il~~i~~rf 217 (233)
..|.. ..|....+-.|.+. ++.|.+.+..++++ .+++..+...++....+.++++.+..++.++
T Consensus 91 ~~~~~------~~~~~~~~~~l~~~-----~~gT~v~~~~~~~~----~g~l~~~~~~~~~~~~~~~~~~~~~~lk~~~ 154 (157)
T 2ns9_A 91 GRGAG------STLDFTLRFAVEPS-----GGGSRVSWVFEGNV----GGLAASMGGRVLDSLARRMINDVISGVKREL 154 (157)
T ss_dssp EECSS------EEEEEEEEEEEEEE-----TTEEEEEEEEEEEE----EEGGGGSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ecCCC------ccEEEEEEEEEEeC-----CCcEEEEEEEEEEE----CcCHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22211 13444444445552 24577777776664 4555566677777777777777777766554
No 3
>2pcs_A Conserved protein; structural genomics, unknown function, ligand binding, PSI-2 structure initiative; HET: UNL; 2.40A {Geobacillus kaustophilus} SCOP: d.129.3.10
Probab=95.88 E-value=0.4 Score=37.12 Aligned_cols=141 Identities=13% Similarity=0.120 Sum_probs=80.3
Q ss_pred EEEEeccCCccHHHhhcCCceeeeeC-CccceeEecCCeEEEEee-cccEEeEEEeEEEEEEEEEcCCceEEEEeeeeee
Q 026771 63 ESVRVRQLQRPLIEYMSLPASQYSVL-DAERIERVDDNTFRCYVY-RFKFFAFEICPVLLVRVEEQPNGCCIKLLSCKLE 140 (233)
Q Consensus 63 ~~v~v~e~~~~l~~YL~~P~~~~all-Dp~~ie~Lgd~~fRl~v~-~l~ff~~eV~P~V~lrV~~~~~g~~i~s~~~~l~ 140 (233)
.++.++.+.+.+=+++.+|+....++ .-..++.++++.|+..+. +.+.+..++...+.+.-...+....+... ..
T Consensus 7 ~~~~i~ap~e~Vw~~l~D~e~~~~w~p~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~---~~ 83 (162)
T 2pcs_A 7 GSIELKGTVEEVWSKLMDPSILSKCIMGCKSLELIGEDKYKADLQIGIAAVKGKYDAIIEVTDIKPPYHYKLLVN---GE 83 (162)
T ss_dssp EEEEEESCHHHHHHHHTCHHHHHHHSTTEEEEEEEETTEEEEEEEECCGGGCEEEEEEEEEEEEETTTEEEEEEE---EE
T ss_pred eEEEecCCHHHHHHHhcCHHHHHhhCCCceEeEEeCCCeEEEEEEEEeeeEEEEEEEEEEEEecCCCcEEEEEEE---ec
Confidence 45566667788999999998765555 334677778888877653 22223333333332211122222222211 11
Q ss_pred CCcchhccccccceeeeEEEEecCCCCCCCcceEEEEEEEEEEEEcCccccccchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026771 141 GSPIVVAQNDKFDASMINRISCDSNSSNSEVQQLTSDAFIEVSIEVPFAFRAFPVEAIESTGTQVLDQILKLMLPRFMSQ 220 (233)
Q Consensus 141 G~~~v~~~n~~F~l~l~~~L~~~~~~~~~~~t~l~g~~~L~V~v~lP~~~~llP~~lle~tG~~vL~~Il~~i~~rf~~q 220 (233)
|.+ ..+....+-.|.+. .++.|.+.+.+++.+ .+++..++..++..+.+.++++.+++++.++..+
T Consensus 84 ~~~------~~~~~~~~~~l~~~----~~~gT~v~~~~~~~~----~g~l~~~~~~l~~~~~~~~~~~~~~~lk~~~e~~ 149 (162)
T 2pcs_A 84 GGP------GFVNAEGVIDLTPI----NDECTQLTYTYSAEV----GGKVAAIGQRMLGGVAKLLISDFFKKIQKEIAKS 149 (162)
T ss_dssp ETT------EEEEEEEEEEEEES----SSSEEEEEEEEEEEE----ESGGGGGCHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred CCC------ccEEEEEEEEEEec----CCCcEEEEEEEEEEE----CCCHHHhhHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 111 11223333345541 224577777766553 4666777888888888888888888888777643
No 4
>3nqn_A Uncharacterized protein; protein with unknown function, structural genomics, joint CE structural genomics, JCSG; HET: MSE; 1.88A {Deinococcus radiodurans}
Probab=77.24 E-value=28 Score=28.27 Aligned_cols=139 Identities=12% Similarity=0.196 Sum_probs=89.0
Q ss_pred eEEEEEEEEEEeccCCccHHHhhcCCce-ee--eeCCccceeEecC---CeEEEEeecccEEeEEEeEEEEEEEEEcCCc
Q 026771 56 RFVARRKESVRVRQLQRPLIEYMSLPAS-QY--SVLDAERIERVDD---NTFRCYVYRFKFFAFEICPVLLVRVEEQPNG 129 (233)
Q Consensus 56 ~F~As~~~~v~v~e~~~~l~~YL~~P~~-~~--allDp~~ie~Lgd---~~fRl~v~~l~ff~~eV~P~V~lrV~~~~~g 129 (233)
.|.+.+..+++.|.+...-..|+++|++ +. +.|.. ++.-|+ |.+|..++-|+=..|-++- |+.+..+|
T Consensus 3 ~le~~~~F~l~~pg~~a~A~A~l~~p~~al~~v~fl~d--L~~eg~~l~G~Lr~~~PllGEv~lPF~S----rl~~~~eG 76 (158)
T 3nqn_A 3 ILSAEQSFTLRHPHGQAAALAFVREPAAALAGVRFLRG--LDSDGEQVWGELLVTVPLLGEVDLPFRS----EIVRTPQG 76 (158)
T ss_dssp -CEEEEEEEEECTTCHHHHHHHHHCHHHHTTTCCSCEE--EEECSSEEEEEEEEEETTTEEEEEEEEE----EEEEETTE
T ss_pred eeeeeeEEEecCCCchHHHHHHHhCHHHHhcCCcchhh--hhhccceeEEEEEecccccceeecchhe----eeeccCCC
Confidence 4678889999999888888899999997 43 33332 333333 6788888877665554443 44556666
Q ss_pred eEEEEeeeeeeCCcchhccccccceeeeEEEEecCCCCCCCcceEEEEEEEEEEEEcCccccccchHHHHHHHHHHHHHH
Q 026771 130 CCIKLLSCKLEGSPIVVAQNDKFDASMINRISCDSNSSNSEVQQLTSDAFIEVSIEVPFAFRAFPVEAIESTGTQVLDQI 209 (233)
Q Consensus 130 ~~i~s~~~~l~G~~~v~~~n~~F~l~l~~~L~~~~~~~~~~~t~l~g~~~L~V~v~lP~~~~llP~~lle~tG~~vL~~I 209 (233)
-.++ -.+.- ..+|++.+.|+..+ +.+..++-+.++.+.+.+|.. |+=|...+..+
T Consensus 77 a~L~-------plpl~---~~r~w~EvsG~a~~------~~g~~l~y~~~~r~hl~LPeg---------e~WGgrAF~km 131 (158)
T 3nqn_A 77 AELR-------PLTLT---GERAWVAVSGQATA------AEGGEMAFAFQFQAHLATPEA---------EGWGGAAFEKM 131 (158)
T ss_dssp EEEE-------ECCCC---TTBCEEEEEEEEEE------CGGGEEEEEEEEEEECC-------------CHHHHHHHHHH
T ss_pred cEee-------ccCCC---CCcceEEeeceeec------CcCCcEEEEEEEEEEEeCCCC---------cchhHHHHHHH
Confidence 4322 22221 14799999999888 234578888888877777643 56677777777
Q ss_pred HHHHHHHHHHHHHHHh
Q 026771 210 LKLMLPRFMSQVSRSI 225 (233)
Q Consensus 210 l~~i~~rf~~qL~~Dy 225 (233)
++..-+|-+..++.++
T Consensus 132 ~ea~f~RtLERvl~~l 147 (158)
T 3nqn_A 132 VQAAAGRTLERVAKAL 147 (158)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 7776666666666554
No 5
>1t17_A Conserved hypothetical protein; beta-alpha-beta-BETA-beta-BETA-beta-BETA-helix, structural G protein structure initiative, PSI, NESG; NMR {Caulobacter crescentus} SCOP: d.129.3.6
Probab=75.09 E-value=24 Score=26.46 Aligned_cols=133 Identities=11% Similarity=0.067 Sum_probs=66.7
Q ss_pred EEEEEeccCCccHHHhhcCCceeeeeCCc-cceeEec--C----CeEEEEeecccEEeEEEeEEEEEEEEEcCCceEEEE
Q 026771 62 KESVRVRQLQRPLIEYMSLPASQYSVLDA-ERIERVD--D----NTFRCYVYRFKFFAFEICPVLLVRVEEQPNGCCIKL 134 (233)
Q Consensus 62 ~~~v~v~e~~~~l~~YL~~P~~~~allDp-~~ie~Lg--d----~~fRl~v~~l~ff~~eV~P~V~lrV~~~~~g~~i~s 134 (233)
+.++.|+-+.+.+=+++.|+++...++.. ..++.++ + +.++..+. +++.++... ...++..+++...|..
T Consensus 5 ~~s~~i~ap~~~v~~~v~D~~~~p~~~p~~~~~~v~~~~~~~g~~~~~~~~~-~~~~~~~~~--~~~~v~~~~~~~~i~~ 81 (148)
T 1t17_A 5 VVTKVLPYTPDQLFELVGDVDAYPKFVPWITGMRTWNGRVDGAVSTVDAEAQ-VGFSFLREK--FATRVRRDKDARSIDV 81 (148)
T ss_dssp EEEEEESSCTHHHHHHHTTTTCCSSCCSSCCCCCEEEEEEETTEEEEEEEEE-CSTTSSCCE--EEEEEEEETTTCEEEE
T ss_pred EEEEEecCCHHHHHHHHHHHhhHHhhCCCcCeeEEEEecCCCCCceEEEEEE-EEecceeEE--EEEEEEEcCCCcEEEE
Confidence 45667777788999999999986666533 3344443 2 33444443 344443222 2234443444322322
Q ss_pred eeeeeeCCcchhccccccceeeeE--EEEecCCCCCCCcceEEEEEEEEEEEEcCccccccchHHHHHHHHHHHHHHHHH
Q 026771 135 LSCKLEGSPIVVAQNDKFDASMIN--RISCDSNSSNSEVQQLTSDAFIEVSIEVPFAFRAFPVEAIESTGTQVLDQILKL 212 (233)
Q Consensus 135 ~~~~l~G~~~v~~~n~~F~l~l~~--~L~~~~~~~~~~~t~l~g~~~L~V~v~lP~~~~llP~~lle~tG~~vL~~Il~~ 212 (233)
... .| .| -.+.| .+.+.+ ++| .+++.+.++++++ ++...++.+++.+.+.
T Consensus 82 ~~~--~G---------~f-~~~~g~w~f~~~~-----~gt----~v~~~~~~~~~~~-------l~~~l~~~~~~~~~~~ 133 (148)
T 1t17_A 82 SLL--YG---------PF-KRLNNGWRFMPEG-----DAT----RVEFVIEFAFKSA-------LLDAMLAANVDRAAGK 133 (148)
T ss_dssp EES--ST---------TS-SCEEEEEEEEEET-----TEE----EEEEEEEECCSCH-------HHHHHHHHHHHHHHHH
T ss_pred EEC--CC---------Ch-hccEEEEEEEECC-----CCe----EEEEEEEEEECcH-------HHHHHHHHHHHHHHHH
Confidence 211 13 22 11223 233421 113 4445555555543 3456666666666666
Q ss_pred HHHHHHHHHHHHh
Q 026771 213 MLPRFMSQVSRSI 225 (233)
Q Consensus 213 i~~rf~~qL~~Dy 225 (233)
|...|..++.+-|
T Consensus 134 ~~~~f~~r~~~~~ 146 (148)
T 1t17_A 134 LIACFEARAQQLH 146 (148)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHh
Confidence 6666666665544
No 6
>1xn5_A BH1534 unknown conserved protein; structural genomics, protein structure initiative, PSI, BACI halodurans protein BH1534, alpha + beta; NMR {Bacillus halodurans} SCOP: d.129.3.5
Probab=57.08 E-value=22 Score=26.77 Aligned_cols=44 Identities=14% Similarity=0.074 Sum_probs=29.0
Q ss_pred EEEEEeccCCccHHHhhcCCceeeeeCCccceeEecCCeEEEEe
Q 026771 62 KESVRVRQLQRPLIEYMSLPASQYSVLDAERIERVDDNTFRCYV 105 (233)
Q Consensus 62 ~~~v~v~e~~~~l~~YL~~P~~~~allDp~~ie~Lgd~~fRl~v 105 (233)
..++.++.+++.+=++|.+|+....-+.+..++.-..+.|++.+
T Consensus 8 ~~~~~i~Ap~e~Vw~altd~~~~~~W~~~~~~~~~~Gg~~~~~~ 51 (146)
T 1xn5_A 8 KKEVRFNAPIEKVWEAVSTSEGLAFWFMENDLKAETGHHFHLQS 51 (146)
T ss_dssp EEEEEESSCHHHHHHHTTSHHHHHTTSCCBCCCSCTTCEEEEEC
T ss_pred EEEEEEcCCHHHHHHHHhChhHHHHhcCCCCCCccCCCEEEEEe
Confidence 34556666677888888888765444444444444567888887
No 7
>3ggn_A Uncharacterized protein DR_A0006; structural genomics, PSI- 2, protein structure initiative, northeast structural genomics consortium; 2.00A {Deinococcus radiodurans R1} PDB: 2kcz_A
Probab=45.87 E-value=95 Score=23.45 Aligned_cols=45 Identities=16% Similarity=0.124 Sum_probs=31.6
Q ss_pred EEEEeccCCccHHHhhcCCceeeeeCCc-cceeEecCCeEEEEeec
Q 026771 63 ESVRVRQLQRPLIEYMSLPASQYSVLDA-ERIERVDDNTFRCYVYR 107 (233)
Q Consensus 63 ~~v~v~e~~~~l~~YL~~P~~~~allDp-~~ie~Lgd~~fRl~v~~ 107 (233)
.++.|..+.+.+=+|+.+|+.....+.. ..++.++++.++..+.-
T Consensus 8 ~s~~I~ap~e~V~~~~~D~e~~p~w~p~~~~v~~~~~~~~~~~~~~ 53 (155)
T 3ggn_A 8 DAVTIGKPAEQLYAVWRDLPGLPLLMTHLRSVEVLDDKRSRWTVEA 53 (155)
T ss_dssp EEEEESSCHHHHHHHHHCGGGHHHHSTTCCEEEECSSSEEEEEEEC
T ss_pred EEEEEcCCHHHHHHHHhCHHHhHHHhhhceEEEEecCCeeEEEEEe
Confidence 3455556678899999999985444433 56788888888877754
No 8
>2l8o_A Uncharacterized protein; mixed alpha-beta protein, PSI-biology, structural genomics, structure initiative; NMR {Cytophaga hutchinsonii}
Probab=41.26 E-value=45 Score=25.02 Aligned_cols=44 Identities=16% Similarity=0.105 Sum_probs=26.6
Q ss_pred EEEEeccCCccHHHhhcCCceeeee-CCcc-------ceeEecCCeEEEEee
Q 026771 63 ESVRVRQLQRPLIEYMSLPASQYSV-LDAE-------RIERVDDNTFRCYVY 106 (233)
Q Consensus 63 ~~v~v~e~~~~l~~YL~~P~~~~al-lDp~-------~ie~Lgd~~fRl~v~ 106 (233)
.++.++.+.+.+=++|.+|+.+... +.|. .++.-..+.|++.+.
T Consensus 6 ~~~~i~Ap~e~Vw~altdpe~~~~W~~~p~~~~~~~~~~d~~~Gg~~~~~~~ 57 (144)
T 2l8o_A 6 VEVTVYAAIEKVWKYWNEPAHIMKWCQASPEWHVPAAQNDLKAGGTFTTTMA 57 (144)
T ss_dssp EEEEECSCHHHHHHHHHCHHHHHHHSTTCTTCEEEEEECCCSTTCEEEEEEE
T ss_pred EEEEECCCHHHHHHHHCCHHHHhhccCCCCCcccceeEEccCCCCEEEEEEE
Confidence 3455666666777777777765555 5432 222334688888875
No 9
>2lgh_A Uncharacterized protein; AHSA1, start domain, COG3832, PF08327, HSP90, heat shock, ST genomics, PSI-biology; NMR {Aeromonas hydrophila subsp}
Probab=39.07 E-value=59 Score=24.32 Aligned_cols=44 Identities=11% Similarity=0.002 Sum_probs=27.8
Q ss_pred EEEEeccCCccHHHhhcCCceeeee-CCcc-------ceeEecCCeEEEEee
Q 026771 63 ESVRVRQLQRPLIEYMSLPASQYSV-LDAE-------RIERVDDNTFRCYVY 106 (233)
Q Consensus 63 ~~v~v~e~~~~l~~YL~~P~~~~al-lDp~-------~ie~Lgd~~fRl~v~ 106 (233)
.++.++.+.+.+=+.+.+|+.+... +.|. .++.-..+.|++.+.
T Consensus 5 ~~~~i~Ap~e~Vw~altdp~~~~~W~~~p~~~~~~~~~~d~~~Gg~~~~~~~ 56 (144)
T 2lgh_A 5 IEAHIEQEIEAVWWAWNDPDCIARWNAASSDWHTTGSRVDLVVGGRFCHHMA 56 (144)
T ss_dssp EEEEESSCHHHHHHHHHCHHHHTTSSSCSTTEEEEEEEECCSTTCEEEEEEE
T ss_pred EEEEeCCCHHHHHHHhCCHHHHhccCCCCCCcccceEEECCCCCCEEEEEEE
Confidence 4455666667777888888776555 5442 223334678888875
No 10
>1xn6_A Hypothetical protein BC4709; structural genomics, protein structure initiative, PSI, NESG target protein BCR68, alpha + beta; NMR {Bacillus cereus} SCOP: d.129.3.5
Probab=37.39 E-value=36 Score=25.18 Aligned_cols=43 Identities=7% Similarity=-0.018 Sum_probs=26.8
Q ss_pred EEEEeccCCccHHHhhcCCceeeeeCCccceeEecCCeEEEEe
Q 026771 63 ESVRVRQLQRPLIEYMSLPASQYSVLDAERIERVDDNTFRCYV 105 (233)
Q Consensus 63 ~~v~v~e~~~~l~~YL~~P~~~~allDp~~ie~Lgd~~fRl~v 105 (233)
.++.++.+.+.+=++|.+|+.+..-+.+..++.-..+.|++.+
T Consensus 12 ~~~~i~ap~e~Vw~~ltd~~~~~~W~~~~~~~~~~G~~~~~~~ 54 (143)
T 1xn6_A 12 QTIVFNASIQKVWSVVSTAEGIASWFMPNDFVLEVGHEFHVQS 54 (143)
T ss_dssp EEEEESSCHHHHHHTTSCSHHHHTTSCCBCCCCCTTCEECBCC
T ss_pred EEEEEcCCHHHHHHHHhCHhHHHHhcCCCCcCcCCCCEEEEEE
Confidence 4455666667788888888765444444334434466777777
No 11
>2nn5_A Hypothetical protein EF_2215; structural genomics, APC29336, PSI-2, structure initiative; HET: MSE; 1.45A {Enterococcus faecalis} SCOP: d.129.3.5
Probab=37.33 E-value=50 Score=26.35 Aligned_cols=46 Identities=9% Similarity=0.050 Sum_probs=29.3
Q ss_pred EEEEEeccCCccHHHhhcCCceeeeeCCccce-eEecCCeEEEEeec
Q 026771 62 KESVRVRQLQRPLIEYMSLPASQYSVLDAERI-ERVDDNTFRCYVYR 107 (233)
Q Consensus 62 ~~~v~v~e~~~~l~~YL~~P~~~~allDp~~i-e~Lgd~~fRl~v~~ 107 (233)
..++.+..+++.+=++|.+|+....-+.+... +.-..+.|++.+..
T Consensus 39 ~~~~~i~Ap~e~VW~altdp~~l~~W~~~~~~~d~~~Gg~~~~~~~~ 85 (184)
T 2nn5_A 39 GTERAISASPQTIWRYLTETDKLKQWFPELEIGELGVNGFWRFILPD 85 (184)
T ss_dssp EEEEEESSCHHHHHHHHHCHHHHHHHCTTEEEEECSTTCEEEEEETT
T ss_pred EEEEEeCCCHHHHHHHHcCHHHHHHhCCCccccccCCCCEEEEEEeC
Confidence 34456666677888888888764444433322 44456889988864
No 12
>3q6a_A Uncharacterized protein; structural genomics, PSI-biology; 1.80A {Staphylococcus saprophyticus subsp}
Probab=35.93 E-value=87 Score=22.84 Aligned_cols=47 Identities=9% Similarity=0.014 Sum_probs=25.6
Q ss_pred EEEEeccCCccHHHhhcCCceeeeeCCc-cceeEecCCeEEEEeeccc
Q 026771 63 ESVRVRQLQRPLIEYMSLPASQYSVLDA-ERIERVDDNTFRCYVYRFK 109 (233)
Q Consensus 63 ~~v~v~e~~~~l~~YL~~P~~~~allDp-~~ie~Lgd~~fRl~v~~l~ 109 (233)
.++.++.+++.+=+++.+|+....-+-+ ...+.--.+.|++.+..+.
T Consensus 5 ~~~~i~ap~e~Vw~altd~~~~~~W~~~~~~~~~~~Gg~~~~~~~~~~ 52 (135)
T 3q6a_A 5 TKMQVDVPRETVFEAFVDPEKIGGFWFSSSSERWEQGKTITLRYEEYD 52 (135)
T ss_dssp EEEEESSCHHHHHHHHHCTTTGGGTSSSEESSCCCTTCEEEEECGGGT
T ss_pred EEEEeCCCHHHHHHHHcCHHHhcccCCCCCcccccCCCEEEEEEcCcC
Confidence 3455666666777777777764332222 1222223567777765443
No 13
>2lcg_A Uncharacterized protein; start domain, structural genomics, northeast structural GENO consortium, NESG, unknown function, AHSA1; NMR {Ralstonia metallidurans}
Probab=35.49 E-value=78 Score=23.34 Aligned_cols=45 Identities=7% Similarity=0.047 Sum_probs=27.4
Q ss_pred EEEEeccCCccHHHhhcCCceeeee-CCccc-------eeEecCCeEEEEeec
Q 026771 63 ESVRVRQLQRPLIEYMSLPASQYSV-LDAER-------IERVDDNTFRCYVYR 107 (233)
Q Consensus 63 ~~v~v~e~~~~l~~YL~~P~~~~al-lDp~~-------ie~Lgd~~fRl~v~~ 107 (233)
.++.++.+.+.+=++|.+|+.+... +.|.. ++.-..+.|++.+..
T Consensus 5 ~~~~i~ap~e~Vw~altd~~~~~~W~~~~~~~~~~~~~~d~~~Gg~~~~~~~~ 57 (142)
T 2lcg_A 5 VETTVAAPVGKVWRAYTTPEDIKQWNAASDDWHTTAATVDLREGGAFSSRMEA 57 (142)
T ss_dssp EEEEESSCHHHHHHHTTCHHHHHHHCCSSTTEEEEEEEECCSTTCEEEEEEEE
T ss_pred EEEEeCCCHHHHHHHhCCHHHHhcCCCCCCCccceeeEEccccCCEEEEEEEc
Confidence 4455666667777888888765444 44322 223346788888753
No 14
>2k5g_A Uncharacterized protein; structural genomiccs, protein structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} SCOP: d.129.3.5
Probab=30.19 E-value=1.3e+02 Score=23.67 Aligned_cols=45 Identities=9% Similarity=0.039 Sum_probs=30.7
Q ss_pred EEEEEeccCCccHHHhhcCCceeeeeCCccceeEecCCeEEEEee
Q 026771 62 KESVRVRQLQRPLIEYMSLPASQYSVLDAERIERVDDNTFRCYVY 106 (233)
Q Consensus 62 ~~~v~v~e~~~~l~~YL~~P~~~~allDp~~ie~Lgd~~fRl~v~ 106 (233)
..++.++.+.+.+=++|.+|+.+..-+-+..++.--.+.|++.+.
T Consensus 22 ~~~~~i~Ap~e~Vw~altdpe~~~~W~~~~~~d~~~Gg~~~~~~~ 66 (191)
T 2k5g_A 22 RFERLLPGPIERVWAWLADADKRARWLAGGELPRQPGQTFELHFN 66 (191)
T ss_dssp EEEEEESSSSHHHHHHHHCHHHHTTTSCCCCCCSSTTCEEEEEEC
T ss_pred EEEEEeCCCHHHHHHHHcCHHHHhhcCCCCCCCccCCCEEEEEEc
Confidence 344566667788888899988755555444455445788998875
No 15
>2kew_A Uncharacterized protein YNDB; start domain, resonance assignments, lipid binding, structural genomics, unknown FU PSI-2; NMR {Bacillus subtilis subsp} PDB: 2kte_A
Probab=29.70 E-value=27 Score=26.54 Aligned_cols=43 Identities=9% Similarity=0.071 Sum_probs=21.6
Q ss_pred EEEEeccCCccHHHhhcCCceeeeeCCccceeEecCCeEEEEe
Q 026771 63 ESVRVRQLQRPLIEYMSLPASQYSVLDAERIERVDDNTFRCYV 105 (233)
Q Consensus 63 ~~v~v~e~~~~l~~YL~~P~~~~allDp~~ie~Lgd~~fRl~v 105 (233)
.++.++.+++.+=++|.+|+.+..-+.+...+.-..+.|++.+
T Consensus 14 ~~~~i~Ap~e~Vw~altd~~~~~~W~~~~~~~~~~Gg~~~~~~ 56 (152)
T 2kew_A 14 KSITLEAPIQKVWETVSTSEGIAKWFMPNDFQLKEGQEFHLQS 56 (152)
T ss_dssp EEEEECSCHHHHHHHSSSSHHHHHHHCSCCCCSCSSCCBCSSS
T ss_pred EEEEECCCHHHHHHHHhCHHHHHHhcCCCCCCCCCCCEEEEEe
Confidence 3445555566677777777653333322222222344555554
No 16
>2ejx_A ST0812; arcaea, unknown function, NPPSFA; 1.79A {Sulfolobus tokodaii str}
Probab=27.49 E-value=57 Score=25.92 Aligned_cols=54 Identities=13% Similarity=0.198 Sum_probs=40.7
Q ss_pred EEeccCCccHHHhhcCCce-eeeeCCccceeE-ecCCeEEEEeecccEEeEEEeEEE
Q 026771 65 VRVRQLQRPLIEYMSLPAS-QYSVLDAERIER-VDDNTFRCYVYRFKFFAFEICPVL 119 (233)
Q Consensus 65 v~v~e~~~~l~~YL~~P~~-~~allDp~~ie~-Lgd~~fRl~v~~l~ff~~eV~P~V 119 (233)
++.......|..-|+||.= +..++.+....- .+++.|++.. ++..+.+++.=.+
T Consensus 11 i~t~hd~~~v~~ILSDP~F~lp~llp~~k~~~~~~~~~F~~~g-~f~~~~~~~~G~v 66 (139)
T 2ejx_A 11 IKTNQDIDVVMTIFSDPAFTIPQIFPGIASIKCIEPEIFEAEG-KFLAFSYKVKGRV 66 (139)
T ss_dssp EECSSCHHHHHHHHTCHHHHHHHHSTTEEEEECCSTTEEEEEE-EETTEEEEEEEEE
T ss_pred eccCCChhheEEEecCCceEehhhCCcEEEEEecCCCeEEEEE-EEeeEEEEEEEEE
Confidence 3333345689999999995 999999988777 8999999998 5666655555444
No 17
>2qpv_A Uncharacterized protein ATU1531; structural genomics, PSI protein structure initiative, midwest center for structural genomics; 2.35A {Agrobacterium tumefaciens str} SCOP: d.129.3.8
Probab=26.18 E-value=2.3e+02 Score=21.97 Aligned_cols=49 Identities=8% Similarity=-0.010 Sum_probs=33.2
Q ss_pred EEEEEEeccCCccHHHhhcCCceeeeeCCc-cceeEecCCeEEEEeeccc
Q 026771 61 RKESVRVRQLQRPLIEYMSLPASQYSVLDA-ERIERVDDNTFRCYVYRFK 109 (233)
Q Consensus 61 ~~~~v~v~e~~~~l~~YL~~P~~~~allDp-~~ie~Lgd~~fRl~v~~l~ 109 (233)
.+.++.|..+.+.+-+|+++|+..-.+... +.+..-+++.|..+..+++
T Consensus 29 ~~~si~I~ap~eeVy~~~~D~e~lP~W~~~l~~~~~~~~~~w~a~~~p~G 78 (156)
T 2qpv_A 29 RIIHLSVEKPWAEVYDFAANPGNMPRWAAGLAGGLEADGEDWIAKGGPLG 78 (156)
T ss_dssp EEEEEEESSCHHHHHHHHHCGGGGGGTCGGGTTCCEEETTEEEEECSSSC
T ss_pred eEEEEEEcCCHHHHHHHHHChhhHHHHHHhhhhhcccCCCcEEEeccCCC
Confidence 366777777789999999999974443322 1223346788988756666
No 18
>3pu2_A Uncharacterized protein; SRPBCC superfamily, PSI-biology, NESG, RHR263, structural GE protein structure initiative; HET: MSE; 2.61A {Rhodobacter sphaeroides}
Probab=20.42 E-value=2.8e+02 Score=20.95 Aligned_cols=43 Identities=16% Similarity=0.000 Sum_probs=24.5
Q ss_pred EEEeccCCccHHHhhcCCceeeeeCCcc-------ceeEecCCeEEEEee
Q 026771 64 SVRVRQLQRPLIEYMSLPASQYSVLDAE-------RIERVDDNTFRCYVY 106 (233)
Q Consensus 64 ~v~v~e~~~~l~~YL~~P~~~~allDp~-------~ie~Lgd~~fRl~v~ 106 (233)
+..++.+++.+=+++.+|+.+..-+-|. .++.--.+.|++.+.
T Consensus 18 ~~~i~Ap~e~Vw~altdp~~~~~W~~~~~~~~~~~~~d~~~Gg~~~~~~~ 67 (164)
T 3pu2_A 18 RRHFAATPEQLWAALTSPALLPAWLFARGWPMTECVFEPHKGGLIRQVWT 67 (164)
T ss_dssp EEEESSCHHHHHHHHHCTTTGGGTSCBTTBCEEEEEECCSTTCEEEEEEE
T ss_pred EEEECCCHHHHHHHhcCHHHHhhEeCCCCeeeEEEEEeccCCCEEEEEEE
Confidence 4455556666777777777644444332 122223578888874
Done!