BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>026773
MTGTFGALSLSQTYQKSRTQLPKILHLHQLYYYKFCIFFQFTSMALTQHVLKPTINPPLY
SFHRSLLTSKAPLSVQTHINSLFSTPRGHYLQNRAPTFTRRLFIPSVSGIWDALTGGNNN
SREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLI
RVSHFNRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLEAR

High Scoring Gene Products

Symbol, full name Information P value
AT3G05625 protein from Arabidopsis thaliana 5.3e-40

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  026773
        (233 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:504955885 - symbol:AT3G05625 "AT3G05625" speci...   426  5.3e-40   1


>TAIR|locus:504955885 [details] [associations]
            symbol:AT3G05625 "AT3G05625" species:3702 "Arabidopsis
            thaliana" [GO:0008150 "biological_process" evidence=ND] [GO:0009570
            "chloroplast stroma" evidence=IDA] [GO:0009507 "chloroplast"
            evidence=IDA] InterPro:IPR011990 InterPro:IPR013026
            InterPro:IPR019734 PROSITE:PS50005 PROSITE:PS50293 GO:GO:0009570
            EMBL:CP002686 GenomeReviews:BA000014_GR Gene3D:1.25.40.10
            InterPro:IPR013105 Pfam:PF07719 EMBL:BT002435 EMBL:BT006291
            IPI:IPI00517630 RefSeq:NP_683531.2 UniGene:At.46014
            ProteinModelPortal:Q8GUK5 SMR:Q8GUK5 IntAct:Q8GUK5 PaxDb:Q8GUK5
            PRIDE:Q8GUK5 EnsemblPlants:AT3G05625.1 GeneID:819729
            KEGG:ath:AT3G05625 TAIR:At3g05625 eggNOG:NOG77063
            HOGENOM:HOG000030826 InParanoid:Q8GUK5 OMA:AEQFRID PhylomeDB:Q8GUK5
            ProtClustDB:CLSN2690732 Genevestigator:Q8GUK5 Uniprot:Q8GUK5
        Length = 257

 Score = 426 (155.0 bits), Expect = 5.3e-40, P = 5.3e-40
 Identities = 90/152 (59%), Positives = 112/152 (73%)

Query:    81 SLFSTPRGHYLQNRAPTFTRRLFIPSVSGIWDALTGG-NNNSREAVVAIRRGMLLFRQGD 139
             S F T    + ++     +RRLF+PSVS IWDA+TGG ++N REA+ A+RRGM LFRQGD
Sbjct:    25 SPFKTLSPQFSRHPPHALSRRLFLPSVSSIWDAITGGGDSNPREAIAAVRRGMQLFRQGD 84

Query:   140 VVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSHFNRFEEGAEQFRIDV 199
             V GSVAEFD+AI LDPRQK     AY         + ++ + + + +RFEEGAEQFRIDV
Sbjct:    85 VAGSVAEFDRAIILDPRQK-----AY---------LWQRGLSLYYVDRFEEGAEQFRIDV 130

Query:   200 AQNPNDTEESIWCFLCEAQLYGVDEARNRFLE 231
             AQNPNDTEESIWCF+CEA+L+GVD AR +FLE
Sbjct:   131 AQNPNDTEESIWCFICEARLHGVDVARTQFLE 162


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.324   0.138   0.412    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      233       233   0.00086  113 3  11 22  0.49    32
                                                     32  0.43    36


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  598 (64 KB)
  Total size of DFA:  176 KB (2103 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  20.76u 0.11s 20.87t   Elapsed:  00:00:01
  Total cpu time:  20.76u 0.11s 20.87t   Elapsed:  00:00:01
  Start:  Sat May 11 05:17:37 2013   End:  Sat May 11 05:17:38 2013

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