BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 026773
         (233 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|Q58741|Y1345_METJA TPR repeat-containing protein MJ1345 OS=Methanocaldococcus
           jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM
           10045 / NBRC 100440) GN=MJ1345 PE=4 SV=1
          Length = 314

 Score = 32.7 bits (73), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 20/67 (29%), Positives = 36/67 (53%), Gaps = 2/67 (2%)

Query: 122 REAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPR--QKISGKGAYRFTISIVGIILKKL 179
           + A+    +G +L+R+G +  S+  FD A++++P+  Q +  KG   F +   G  LK L
Sbjct: 145 KSAIAWAEKGEILYREGKLKKSLECFDNALKINPKDCQSLLYKGEILFKLGRYGEALKCL 204

Query: 180 IRVSHFN 186
            +V   N
Sbjct: 205 KKVFERN 211


>sp|Q3A825|NUBCD_PELCD NADH-quinone oxidoreductase subunit B/C/D OS=Pelobacter
           carbinolicus (strain DSM 2380 / Gra Bd 1) GN=nuoBCD PE=3
           SV=1
          Length = 794

 Score = 32.7 bits (73), Expect = 2.1,   Method: Compositional matrix adjust.
 Identities = 20/56 (35%), Positives = 28/56 (50%), Gaps = 3/56 (5%)

Query: 69  SKAPLSVQTHINSLFSTPRGHYLQNRAPTFTRRLFIPSVSGIWDALTGGNNNSREA 124
           S+ P    T +  L S  R  YL+ +AP    R  +PS++G+W A    N   REA
Sbjct: 288 SQRPAHDLTMVYHLLSFERAGYLRVKAPLRNDRAEVPSITGLWPA---ANWYEREA 340


>sp|Q28G25|BBS4_XENTR Bardet-Biedl syndrome 4 protein homolog OS=Xenopus tropicalis
           GN=bbs4 PE=2 SV=1
          Length = 516

 Score = 32.0 bits (71), Expect = 4.0,   Method: Compositional matrix adjust.
 Identities = 16/55 (29%), Positives = 30/55 (54%)

Query: 102 LFIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPR 156
           LF+  +S   + LT      R+ + AI  G +  ++GD+ G++  F +A++L P 
Sbjct: 143 LFLKDLSKSKEQLTLALQLHRQDLSAITLGKIQLQEGDIDGAIQTFTQALQLSPE 197


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.324    0.138    0.412 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 84,803,142
Number of Sequences: 539616
Number of extensions: 3412396
Number of successful extensions: 8444
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 8438
Number of HSP's gapped (non-prelim): 8
length of query: 233
length of database: 191,569,459
effective HSP length: 114
effective length of query: 119
effective length of database: 130,053,235
effective search space: 15476334965
effective search space used: 15476334965
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 59 (27.3 bits)