Query 026773
Match_columns 233
No_of_seqs 198 out of 1128
Neff 4.9
Searched_HMMs 46136
Date Fri Mar 29 12:29:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026773.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026773hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK15359 type III secretion sy 99.6 2.2E-15 4.7E-20 122.8 11.5 100 98-213 34-133 (144)
2 PRK11189 lipoprotein NlpI; Pro 99.6 8.1E-15 1.7E-19 131.8 13.9 121 94-231 70-190 (296)
3 PRK15359 type III secretion sy 99.6 2.4E-14 5.2E-19 116.6 12.2 106 108-232 13-118 (144)
4 PRK10370 formate-dependent nit 99.5 2.1E-13 4.6E-18 117.0 14.2 112 105-232 56-170 (198)
5 KOG0553 TPR repeat-containing 99.5 3.9E-14 8.5E-19 129.7 10.1 112 96-223 89-200 (304)
6 TIGR02552 LcrH_SycD type III s 99.5 2.3E-13 4.9E-18 106.1 12.6 107 110-232 5-111 (135)
7 PRK11189 lipoprotein NlpI; Pro 99.5 3.5E-13 7.6E-18 121.2 14.0 112 107-232 45-158 (296)
8 PRK12370 invasion protein regu 99.5 4.2E-13 9.2E-18 130.2 14.0 110 105-230 321-430 (553)
9 PRK12370 invasion protein regu 99.5 8.4E-13 1.8E-17 128.2 14.9 118 99-232 349-467 (553)
10 PLN03088 SGT1, suppressor of 99.5 4.9E-13 1.1E-17 124.0 12.4 105 100-220 14-118 (356)
11 TIGR00990 3a0801s09 mitochondr 99.5 1E-12 2.2E-17 128.1 14.7 109 107-231 384-492 (615)
12 PF13414 TPR_11: TPR repeat; P 99.5 1.7E-13 3.7E-18 96.5 6.5 68 122-203 1-69 (69)
13 TIGR00990 3a0801s09 mitochondr 99.4 1.5E-12 3.3E-17 126.9 14.9 113 104-232 347-459 (615)
14 PRK15363 pathogenicity island 99.4 2.6E-12 5.7E-17 108.4 11.2 101 118-232 28-129 (157)
15 PRK15179 Vi polysaccharide bio 99.4 4.9E-12 1.1E-16 127.3 14.6 121 96-232 94-214 (694)
16 KOG4626 O-linked N-acetylgluco 99.4 2.9E-12 6.3E-17 127.1 11.4 119 96-230 328-446 (966)
17 PLN02789 farnesyltranstransfer 99.4 8.2E-12 1.8E-16 115.1 13.2 150 66-231 11-167 (320)
18 TIGR02521 type_IV_pilW type IV 99.3 4.3E-11 9.2E-16 96.6 14.4 130 96-232 39-195 (234)
19 PRK09782 bacteriophage N4 rece 99.3 1.3E-11 2.9E-16 128.2 14.3 114 102-232 590-703 (987)
20 TIGR02552 LcrH_SycD type III s 99.3 2.5E-11 5.4E-16 94.6 11.4 102 98-215 27-128 (135)
21 KOG1126 DNA-binding cell divis 99.3 7.5E-12 1.6E-16 123.8 9.9 165 45-232 408-583 (638)
22 KOG0547 Translocase of outer m 99.3 7.3E-12 1.6E-16 121.4 9.3 106 110-231 382-487 (606)
23 TIGR02521 type_IV_pilW type IV 99.3 1E-10 2.3E-15 94.3 14.6 118 100-231 111-228 (234)
24 PRK15174 Vi polysaccharide exp 99.3 6.4E-11 1.4E-15 117.7 14.7 109 107-231 269-377 (656)
25 KOG1126 DNA-binding cell divis 99.3 1.3E-11 2.8E-16 122.1 9.4 111 118-232 415-549 (638)
26 cd00189 TPR Tetratricopeptide 99.3 5.3E-11 1.1E-15 81.0 9.4 93 126-232 2-94 (100)
27 KOG4626 O-linked N-acetylgluco 99.3 3.2E-11 6.9E-16 119.8 11.5 110 107-232 305-414 (966)
28 KOG0553 TPR repeat-containing 99.3 3.3E-11 7.1E-16 110.6 10.7 95 124-232 81-175 (304)
29 KOG0547 Translocase of outer m 99.3 2.6E-11 5.6E-16 117.6 10.3 111 106-232 344-454 (606)
30 PRK15174 Vi polysaccharide exp 99.2 1.3E-10 2.8E-15 115.6 15.0 121 96-232 220-344 (656)
31 TIGR02917 PEP_TPR_lipo putativ 99.2 1.6E-10 3.5E-15 110.5 14.9 129 97-232 745-897 (899)
32 PLN03088 SGT1, suppressor of 99.2 8E-11 1.7E-15 109.3 12.0 92 127-232 5-96 (356)
33 KOG1125 TPR repeat-containing 99.2 1.6E-11 3.5E-16 120.1 7.5 112 105-232 411-524 (579)
34 PRK02603 photosystem I assembl 99.2 3.5E-10 7.6E-15 93.6 13.6 108 103-221 10-121 (172)
35 PRK11447 cellulose synthase su 99.2 2.5E-10 5.4E-15 119.5 15.5 129 98-232 279-411 (1157)
36 PF13432 TPR_16: Tetratricopep 99.2 3.3E-11 7.2E-16 84.2 6.1 65 128-206 1-65 (65)
37 PRK15363 pathogenicity island 99.2 1.7E-10 3.7E-15 97.5 11.5 96 97-208 44-139 (157)
38 TIGR02795 tol_pal_ybgF tol-pal 99.2 5E-10 1.1E-14 84.0 12.3 97 124-231 2-101 (119)
39 TIGR02917 PEP_TPR_lipo putativ 99.2 6.9E-10 1.5E-14 106.2 14.8 116 100-231 137-252 (899)
40 PRK11447 cellulose synthase su 99.2 6.1E-10 1.3E-14 116.7 15.7 126 100-232 363-521 (1157)
41 COG4785 NlpI Lipoprotein NlpI, 99.2 2.1E-10 4.5E-15 102.8 10.0 117 100-231 70-191 (297)
42 TIGR03302 OM_YfiO outer membra 99.1 8.9E-10 1.9E-14 93.8 13.5 124 96-232 41-192 (235)
43 COG3063 PilF Tfp pilus assembl 99.1 6E-10 1.3E-14 99.7 12.0 115 100-231 47-164 (250)
44 PRK09782 bacteriophage N4 rece 99.1 4.4E-10 9.5E-15 117.0 12.9 118 96-229 617-734 (987)
45 CHL00033 ycf3 photosystem I as 99.1 1.6E-09 3.5E-14 89.0 13.4 109 110-231 21-138 (168)
46 PF13429 TPR_15: Tetratricopep 99.1 1.9E-10 4.1E-15 101.1 8.4 138 94-232 116-274 (280)
47 PLN02789 farnesyltranstransfer 99.1 6.1E-10 1.3E-14 102.8 12.0 99 105-219 89-189 (320)
48 PRK11788 tetratricopeptide rep 99.1 2.1E-09 4.5E-14 97.0 14.7 127 95-232 114-240 (389)
49 KOG0548 Molecular co-chaperone 99.1 3.7E-10 8.1E-15 110.0 9.9 105 98-218 368-472 (539)
50 TIGR03302 OM_YfiO outer membra 99.1 1.5E-09 3.2E-14 92.4 12.2 129 96-232 78-229 (235)
51 PLN03098 LPA1 LOW PSII ACCUMUL 99.1 5.8E-10 1.3E-14 107.4 10.3 74 118-202 69-142 (453)
52 PRK11788 tetratricopeptide rep 99.1 2.5E-09 5.3E-14 96.5 13.7 118 99-232 191-308 (389)
53 PRK10049 pgaA outer membrane p 99.1 2.1E-09 4.5E-14 108.5 14.5 118 96-230 57-174 (765)
54 COG3063 PilF Tfp pilus assembl 99.1 1.4E-09 3E-14 97.4 11.1 95 124-232 35-129 (250)
55 KOG1155 Anaphase-promoting com 99.1 1.7E-09 3.6E-14 104.7 12.3 112 105-232 347-458 (559)
56 PF12895 Apc3: Anaphase-promot 99.0 2.7E-10 5.9E-15 83.8 5.2 84 136-232 1-84 (84)
57 PRK10370 formate-dependent nit 99.0 1.6E-09 3.4E-14 93.1 10.6 97 97-209 82-181 (198)
58 cd00189 TPR Tetratricopeptide 99.0 1.8E-09 3.9E-14 73.3 8.8 90 99-204 11-100 (100)
59 PF13371 TPR_9: Tetratricopept 99.0 1.5E-09 3.3E-14 76.9 8.2 68 131-212 2-69 (73)
60 PF13429 TPR_15: Tetratricopep 99.0 1.1E-09 2.3E-14 96.4 8.8 96 121-230 107-204 (280)
61 PRK15179 Vi polysaccharide bio 99.0 2.2E-09 4.7E-14 108.3 12.0 100 119-232 81-180 (694)
62 KOG0548 Molecular co-chaperone 99.0 2.4E-09 5.1E-14 104.4 10.8 115 103-233 339-453 (539)
63 PF12688 TPR_5: Tetratrico pep 99.0 7.3E-09 1.6E-13 83.6 11.8 98 124-232 1-101 (120)
64 COG5010 TadD Flp pilus assembl 99.0 4.4E-09 9.5E-14 95.0 11.6 116 98-229 110-225 (257)
65 PRK10049 pgaA outer membrane p 99.0 8E-09 1.7E-13 104.3 14.6 118 98-232 25-142 (765)
66 TIGR02795 tol_pal_ybgF tol-pal 99.0 8.9E-09 1.9E-13 77.1 11.1 100 96-208 10-112 (119)
67 COG5010 TadD Flp pilus assembl 98.9 1.6E-08 3.4E-13 91.4 13.1 102 118-233 94-195 (257)
68 cd05804 StaR_like StaR_like; a 98.9 1.9E-08 4E-13 89.9 13.1 101 118-232 108-212 (355)
69 COG4235 Cytochrome c biogenesi 98.9 1E-08 2.2E-13 94.0 11.5 100 118-231 150-252 (287)
70 PRK15331 chaperone protein Sic 98.9 8.7E-09 1.9E-13 87.8 10.2 112 107-232 13-131 (165)
71 KOG1155 Anaphase-promoting com 98.9 1.5E-08 3.1E-13 98.2 12.4 112 104-231 380-491 (559)
72 KOG1125 TPR repeat-containing 98.9 1.3E-08 2.9E-13 100.0 11.4 128 98-232 295-490 (579)
73 KOG0624 dsRNA-activated protei 98.9 1.3E-08 2.7E-13 96.3 10.2 86 104-205 54-139 (504)
74 PF13414 TPR_11: TPR repeat; P 98.9 6.9E-09 1.5E-13 72.9 6.1 59 174-232 5-64 (69)
75 PRK11906 transcriptional regul 98.8 4E-08 8.6E-13 95.0 12.9 113 105-231 275-397 (458)
76 PF12895 Apc3: Anaphase-promot 98.8 3.1E-09 6.8E-14 78.2 3.8 78 104-198 5-84 (84)
77 COG4783 Putative Zn-dependent 98.8 7.9E-08 1.7E-12 93.1 14.4 113 103-231 321-433 (484)
78 PF09976 TPR_21: Tetratricopep 98.8 1.2E-07 2.6E-12 76.5 12.8 116 103-232 26-144 (145)
79 KOG0550 Molecular chaperone (D 98.8 9.8E-09 2.1E-13 98.3 7.2 126 104-232 185-347 (486)
80 KOG0624 dsRNA-activated protei 98.8 9.3E-09 2E-13 97.2 6.8 101 118-232 32-132 (504)
81 KOG4555 TPR repeat-containing 98.8 4.3E-08 9.3E-13 82.3 9.6 146 44-208 3-151 (175)
82 KOG1173 Anaphase-promoting com 98.8 1.8E-08 3.9E-13 99.1 8.3 119 105-232 397-515 (611)
83 PRK02603 photosystem I assembl 98.8 6.9E-08 1.5E-12 79.9 10.0 95 96-206 43-154 (172)
84 CHL00033 ycf3 photosystem I as 98.7 1.5E-07 3.3E-12 77.3 11.5 101 98-207 45-155 (168)
85 PF13424 TPR_12: Tetratricopep 98.7 1.4E-08 3.1E-13 73.1 4.7 74 121-201 2-75 (78)
86 PRK10803 tol-pal system protei 98.7 2.2E-07 4.8E-12 83.8 13.4 98 124-232 142-243 (263)
87 PRK10153 DNA-binding transcrip 98.7 1.5E-07 3.2E-12 92.2 12.6 111 105-232 359-479 (517)
88 cd05804 StaR_like StaR_like; a 98.7 1.3E-07 2.9E-12 84.5 11.2 115 104-232 59-174 (355)
89 PF13432 TPR_16: Tetratricopep 98.7 3.7E-08 8E-13 68.7 5.9 59 98-158 7-65 (65)
90 PRK10803 tol-pal system protei 98.7 1.6E-07 3.5E-12 84.7 11.3 97 99-208 154-253 (263)
91 PRK11906 transcriptional regul 98.7 1.8E-07 3.8E-12 90.6 12.2 98 118-229 332-430 (458)
92 KOG0543 FKBP-type peptidyl-pro 98.7 1.4E-07 3E-12 89.7 11.2 81 125-219 258-338 (397)
93 KOG4162 Predicted calmodulin-b 98.7 2.4E-07 5.2E-12 93.7 13.2 100 118-231 678-779 (799)
94 KOG0376 Serine-threonine phosp 98.7 2E-08 4.3E-13 97.1 5.2 104 93-212 9-112 (476)
95 PF14559 TPR_19: Tetratricopep 98.7 4.2E-08 9E-13 68.5 5.5 62 134-209 1-62 (68)
96 KOG4648 Uncharacterized conser 98.7 8.3E-08 1.8E-12 90.9 8.8 148 42-207 38-200 (536)
97 PRK10153 DNA-binding transcrip 98.6 1.8E-07 3.8E-12 91.7 10.7 160 51-228 331-510 (517)
98 PF06552 TOM20_plant: Plant sp 98.6 1E-07 2.2E-12 82.6 7.1 93 99-207 2-115 (186)
99 PRK14574 hmsH outer membrane p 98.6 7.6E-07 1.6E-11 91.6 14.2 112 105-232 51-162 (822)
100 KOG2076 RNA polymerase III tra 98.6 8.1E-07 1.8E-11 91.0 13.4 120 94-231 146-266 (895)
101 PLN03098 LPA1 LOW PSII ACCUMUL 98.5 1.9E-07 4.1E-12 90.3 7.9 58 175-232 78-138 (453)
102 PF00515 TPR_1: Tetratricopept 98.5 1.3E-07 2.9E-12 58.5 4.4 34 124-157 1-34 (34)
103 KOG0550 Molecular chaperone (D 98.5 2.7E-07 5.8E-12 88.6 7.5 90 99-204 260-353 (486)
104 KOG4234 TPR repeat-containing 98.5 6E-07 1.3E-11 80.0 9.1 93 100-208 107-204 (271)
105 PF13371 TPR_9: Tetratricopept 98.5 4.5E-07 9.9E-12 64.1 6.1 58 99-158 6-63 (73)
106 KOG4648 Uncharacterized conser 98.5 3.6E-07 7.8E-12 86.7 7.1 145 68-232 42-191 (536)
107 KOG4555 TPR repeat-containing 98.4 2.9E-06 6.4E-11 71.4 11.5 95 124-232 43-141 (175)
108 PF07719 TPR_2: Tetratricopept 98.4 6.5E-07 1.4E-11 54.8 5.1 34 124-157 1-34 (34)
109 TIGR00540 hemY_coli hemY prote 98.4 3.3E-06 7.3E-11 79.1 12.2 58 174-232 337-396 (409)
110 PF13512 TPR_18: Tetratricopep 98.4 4.4E-06 9.6E-11 69.8 11.4 99 122-231 8-124 (142)
111 PRK15331 chaperone protein Sic 98.4 2.1E-06 4.5E-11 73.3 9.5 91 101-208 50-140 (165)
112 PRK10866 outer membrane biogen 98.4 8.7E-06 1.9E-10 72.3 13.1 87 122-219 30-119 (243)
113 KOG4642 Chaperone-dependent E3 98.4 7E-07 1.5E-11 80.9 6.2 94 125-232 11-104 (284)
114 TIGR00540 hemY_coli hemY prote 98.4 9.9E-06 2.1E-10 76.0 14.0 113 105-232 101-213 (409)
115 KOG1127 TPR repeat-containing 98.3 9.1E-07 2E-11 91.8 7.4 119 97-231 535-655 (1238)
116 KOG1128 Uncharacterized conser 98.3 2.4E-06 5.1E-11 86.4 9.8 130 86-232 422-579 (777)
117 KOG0543 FKBP-type peptidyl-pro 98.3 4.2E-06 9.2E-11 79.8 11.0 108 124-232 208-317 (397)
118 PF13525 YfiO: Outer membrane 98.3 6.9E-06 1.5E-10 70.3 11.4 87 122-219 3-92 (203)
119 KOG1308 Hsp70-interacting prot 98.3 4.1E-07 8.9E-12 85.5 4.1 111 99-226 125-235 (377)
120 KOG4234 TPR repeat-containing 98.3 4.5E-06 9.7E-11 74.5 10.3 101 123-232 94-194 (271)
121 PF09295 ChAPs: ChAPs (Chs5p-A 98.3 9.4E-06 2E-10 77.5 13.1 108 103-229 184-291 (395)
122 PRK14720 transcript cleavage f 98.3 8.7E-06 1.9E-10 84.6 13.2 121 107-232 14-175 (906)
123 PRK10747 putative protoheme IX 98.3 1.3E-05 2.8E-10 75.1 12.8 113 100-232 275-387 (398)
124 COG1729 Uncharacterized protei 98.3 1.6E-05 3.5E-10 72.3 12.6 95 127-232 144-241 (262)
125 PRK14574 hmsH outer membrane p 98.2 1.5E-05 3.3E-10 82.2 13.4 110 103-229 117-226 (822)
126 COG4785 NlpI Lipoprotein NlpI, 98.2 2E-06 4.4E-11 77.5 6.0 96 122-231 63-158 (297)
127 KOG1129 TPR repeat-containing 98.2 7.1E-06 1.5E-10 77.6 9.0 109 110-231 346-454 (478)
128 PF14559 TPR_19: Tetratricopep 98.2 5.3E-06 1.2E-10 57.8 6.1 51 182-232 1-51 (68)
129 PF13512 TPR_18: Tetratricopep 98.2 1.7E-05 3.7E-10 66.3 10.0 101 93-207 16-134 (142)
130 KOG0376 Serine-threonine phosp 98.2 2.1E-06 4.4E-11 83.4 5.0 93 126-232 6-98 (476)
131 PF03704 BTAD: Bacterial trans 98.1 7.7E-05 1.7E-09 59.6 12.5 108 125-232 7-122 (146)
132 PRK10866 outer membrane biogen 98.1 7.7E-05 1.7E-09 66.3 13.7 126 93-232 38-201 (243)
133 PF00515 TPR_1: Tetratricopept 98.1 3E-06 6.4E-11 52.4 3.3 33 173-205 2-34 (34)
134 PRK10747 putative protoheme IX 98.1 6.5E-05 1.4E-09 70.5 13.0 97 122-231 115-212 (398)
135 PF12569 NARP1: NMDA receptor- 98.1 3.7E-05 8.1E-10 75.7 11.4 89 125-229 195-285 (517)
136 KOG1308 Hsp70-interacting prot 98.1 1.7E-06 3.6E-11 81.5 1.9 85 133-231 123-207 (377)
137 KOG2076 RNA polymerase III tra 98.0 5.8E-05 1.3E-09 77.8 12.8 91 98-204 183-273 (895)
138 COG4783 Putative Zn-dependent 98.0 5.8E-05 1.2E-09 73.6 11.7 99 119-231 301-399 (484)
139 PF13431 TPR_17: Tetratricopep 98.0 4.4E-06 9.4E-11 53.2 2.7 33 111-145 2-34 (34)
140 PF13424 TPR_12: Tetratricopep 98.0 1E-05 2.2E-10 58.1 4.7 62 171-232 4-72 (78)
141 KOG1173 Anaphase-promoting com 98.0 4E-05 8.7E-10 76.0 10.2 175 32-232 254-440 (611)
142 PF13181 TPR_8: Tetratricopept 98.0 1.2E-05 2.5E-10 49.5 4.3 34 124-157 1-34 (34)
143 PF12688 TPR_5: Tetratrico pep 98.0 0.0001 2.2E-09 59.6 10.5 96 94-200 7-103 (120)
144 KOG2002 TPR-containing nuclear 97.9 3.6E-05 7.9E-10 79.9 9.2 118 100-233 624-743 (1018)
145 COG4235 Cytochrome c biogenesi 97.9 6.7E-05 1.5E-09 69.1 10.1 92 100-207 168-262 (287)
146 COG0457 NrfG FOG: TPR repeat [ 97.9 0.00038 8.3E-09 52.1 12.5 112 105-231 112-227 (291)
147 PF07719 TPR_2: Tetratricopept 97.9 1.6E-05 3.5E-10 48.5 4.0 32 174-205 3-34 (34)
148 KOG1128 Uncharacterized conser 97.9 3.6E-05 7.9E-10 78.0 8.6 111 104-230 501-611 (777)
149 KOG1840 Kinesin light chain [C 97.9 5.9E-05 1.3E-09 74.2 9.5 110 117-232 276-393 (508)
150 KOG1174 Anaphase-promoting com 97.9 0.00012 2.5E-09 71.1 10.8 96 119-228 295-390 (564)
151 KOG2002 TPR-containing nuclear 97.9 9.7E-05 2.1E-09 76.8 10.8 99 120-231 303-405 (1018)
152 COG0457 NrfG FOG: TPR repeat [ 97.8 0.001 2.2E-08 49.9 13.3 117 101-231 72-192 (291)
153 PF13428 TPR_14: Tetratricopep 97.8 2.7E-05 5.8E-10 51.4 4.1 35 124-158 1-35 (44)
154 PF09976 TPR_21: Tetratricopep 97.8 0.00064 1.4E-08 54.8 12.8 89 133-232 20-111 (145)
155 PF10300 DUF3808: Protein of u 97.8 0.00018 3.9E-09 69.7 11.3 117 104-232 249-373 (468)
156 KOG4162 Predicted calmodulin-b 97.8 9.1E-05 2E-09 75.5 9.0 93 98-206 694-788 (799)
157 PF13428 TPR_14: Tetratricopep 97.8 5E-05 1.1E-09 50.1 4.8 39 174-212 3-41 (44)
158 KOG1840 Kinesin light chain [C 97.8 0.00025 5.3E-09 69.9 11.2 120 106-232 350-476 (508)
159 KOG4642 Chaperone-dependent E3 97.7 0.00012 2.5E-09 66.7 8.1 104 103-222 25-131 (284)
160 COG1729 Uncharacterized protei 97.7 0.00032 7E-09 63.9 10.8 105 90-208 144-251 (262)
161 PF13431 TPR_17: Tetratricopep 97.7 3.3E-05 7.2E-10 49.1 3.1 34 194-227 1-34 (34)
162 KOG1156 N-terminal acetyltrans 97.7 0.00018 3.9E-09 72.3 9.8 101 110-226 29-129 (700)
163 COG2956 Predicted N-acetylgluc 97.7 0.00033 7.1E-09 66.1 10.7 115 99-229 152-272 (389)
164 KOG0551 Hsp90 co-chaperone CNS 97.7 0.00019 4.1E-09 67.8 9.0 99 123-231 80-178 (390)
165 PRK10941 hypothetical protein; 97.7 0.00035 7.5E-09 63.7 10.5 75 125-213 182-256 (269)
166 PF13525 YfiO: Outer membrane 97.7 0.00062 1.3E-08 58.3 11.3 118 102-232 19-167 (203)
167 PF04733 Coatomer_E: Coatomer 97.6 0.00026 5.7E-09 64.6 8.9 122 108-229 115-258 (290)
168 KOG1127 TPR repeat-containing 97.6 0.00014 3E-09 76.2 7.7 116 117-232 485-622 (1238)
169 COG2956 Predicted N-acetylgluc 97.6 0.00067 1.4E-08 64.1 11.4 136 86-232 105-240 (389)
170 KOG2003 TPR repeat-containing 97.6 0.00014 3.1E-09 71.4 6.9 99 118-230 484-582 (840)
171 smart00028 TPR Tetratricopepti 97.6 0.0001 2.3E-09 41.3 3.7 33 125-157 2-34 (34)
172 PF06552 TOM20_plant: Plant sp 97.6 0.00018 3.9E-09 62.6 6.4 79 140-232 7-99 (186)
173 KOG3060 Uncharacterized conser 97.6 0.0012 2.7E-08 60.5 12.0 50 107-158 71-120 (289)
174 PLN03081 pentatricopeptide (PP 97.6 0.00081 1.7E-08 67.1 11.8 124 95-231 266-416 (697)
175 PLN03081 pentatricopeptide (PP 97.6 0.00079 1.7E-08 67.1 11.7 133 94-232 397-554 (697)
176 PF12569 NARP1: NMDA receptor- 97.5 0.0014 2.9E-08 64.8 13.0 119 97-232 203-331 (517)
177 KOG1156 N-terminal acetyltrans 97.5 0.00053 1.2E-08 69.1 10.1 102 116-231 67-168 (700)
178 COG4700 Uncharacterized protei 97.5 0.0048 1E-07 55.0 14.0 122 96-231 97-218 (251)
179 PF14938 SNAP: Soluble NSF att 97.4 0.00078 1.7E-08 60.4 9.1 130 93-231 80-221 (282)
180 KOG1129 TPR repeat-containing 97.4 0.00098 2.1E-08 63.4 9.8 100 118-231 284-383 (478)
181 KOG3060 Uncharacterized conser 97.4 0.0025 5.4E-08 58.5 11.9 84 118-215 148-234 (289)
182 PF13181 TPR_8: Tetratricopept 97.4 0.0002 4.3E-09 43.9 3.3 33 173-205 2-34 (34)
183 KOG0551 Hsp90 co-chaperone CNS 97.4 0.00047 1E-08 65.2 7.1 88 105-206 98-187 (390)
184 PLN03218 maturation of RBCL 1; 97.4 0.0032 7E-08 66.9 14.1 118 97-230 516-638 (1060)
185 KOG1174 Anaphase-promoting com 97.3 0.0018 3.8E-08 63.2 10.6 114 118-232 226-360 (564)
186 PLN03077 Protein ECB2; Provisi 97.3 0.0026 5.6E-08 64.9 12.2 117 98-231 599-716 (857)
187 PLN03218 maturation of RBCL 1; 97.3 0.0042 9.1E-08 66.1 13.9 56 175-231 687-744 (1060)
188 KOG2003 TPR repeat-containing 97.3 0.00084 1.8E-08 66.2 8.0 121 96-232 427-550 (840)
189 COG4105 ComL DNA uptake lipopr 97.3 0.0019 4.2E-08 58.7 9.7 85 122-217 32-119 (254)
190 PF14938 SNAP: Soluble NSF att 97.3 0.0014 3E-08 58.8 8.6 133 91-232 38-181 (282)
191 smart00028 TPR Tetratricopepti 97.3 0.00042 9.2E-09 38.7 3.4 32 174-205 3-34 (34)
192 KOG2610 Uncharacterized conser 97.3 0.0029 6.2E-08 60.5 10.8 117 102-231 117-234 (491)
193 KOG4340 Uncharacterized conser 97.2 0.0019 4.1E-08 61.0 9.1 109 118-231 38-203 (459)
194 PF04733 Coatomer_E: Coatomer 97.2 0.0014 3.1E-08 59.8 7.8 88 104-207 183-271 (290)
195 PLN03077 Protein ECB2; Provisi 97.2 0.0062 1.3E-07 62.2 13.1 115 95-231 531-650 (857)
196 KOG2376 Signal recognition par 97.2 0.0029 6.3E-08 63.4 10.3 108 104-231 28-135 (652)
197 PRK14720 transcript cleavage f 97.1 0.0072 1.6E-07 63.4 13.4 120 95-217 123-268 (906)
198 KOG0545 Aryl-hydrocarbon recep 97.1 0.0046 9.9E-08 57.0 10.5 105 123-232 177-290 (329)
199 PF13174 TPR_6: Tetratricopept 97.1 0.0011 2.3E-08 39.8 4.1 33 125-157 1-33 (33)
200 PF09295 ChAPs: ChAPs (Chs5p-A 97.0 0.0034 7.4E-08 60.2 8.9 79 105-199 217-295 (395)
201 PRK04841 transcriptional regul 97.0 0.011 2.4E-07 59.9 12.7 118 105-232 469-599 (903)
202 KOG2796 Uncharacterized conser 96.9 0.0067 1.5E-07 56.4 9.6 142 80-231 137-311 (366)
203 PF13176 TPR_7: Tetratricopept 96.9 0.0017 3.7E-08 41.2 4.0 30 126-155 1-30 (36)
204 KOG0495 HAT repeat protein [RN 96.7 0.023 4.9E-07 58.2 12.5 97 123-233 650-746 (913)
205 COG4700 Uncharacterized protei 96.6 0.015 3.2E-07 51.9 9.4 99 118-231 84-185 (251)
206 PF13174 TPR_6: Tetratricopept 96.6 0.0024 5.2E-08 38.3 3.2 32 174-205 2-33 (33)
207 PF03704 BTAD: Bacterial trans 96.6 0.011 2.3E-07 47.2 7.7 64 123-200 61-124 (146)
208 KOG0495 HAT repeat protein [RN 96.6 0.028 6.1E-07 57.5 12.0 113 103-231 666-778 (913)
209 KOG0545 Aryl-hydrocarbon recep 96.5 0.0061 1.3E-07 56.2 6.3 135 56-207 143-299 (329)
210 COG3118 Thioredoxin domain-con 96.5 0.056 1.2E-06 50.4 12.5 95 123-231 133-261 (304)
211 PRK04841 transcriptional regul 96.4 0.032 7E-07 56.5 11.4 100 124-232 452-557 (903)
212 COG3071 HemY Uncharacterized e 96.4 0.05 1.1E-06 52.4 11.6 81 137-232 307-387 (400)
213 PF13176 TPR_7: Tetratricopept 96.3 0.0047 1E-07 39.1 3.3 29 174-202 1-29 (36)
214 KOG1130 Predicted G-alpha GTPa 96.3 0.0027 5.8E-08 62.0 2.7 100 124-231 195-300 (639)
215 PF14853 Fis1_TPR_C: Fis1 C-te 96.2 0.017 3.8E-07 40.5 6.0 40 177-216 6-45 (53)
216 KOG2053 Mitochondrial inherita 96.2 0.029 6.2E-07 58.6 9.9 101 107-224 28-128 (932)
217 KOG2376 Signal recognition par 96.2 0.039 8.5E-07 55.6 10.2 88 128-232 83-201 (652)
218 KOG3785 Uncharacterized conser 96.2 0.012 2.6E-07 56.8 6.4 83 136-231 34-116 (557)
219 PF05843 Suf: Suppressor of fo 96.1 0.05 1.1E-06 49.1 9.9 110 103-228 16-129 (280)
220 PF13374 TPR_10: Tetratricopep 96.0 0.016 3.5E-07 36.1 4.7 31 124-154 2-32 (42)
221 COG2912 Uncharacterized conser 95.9 0.057 1.2E-06 49.6 9.3 68 128-209 185-252 (269)
222 KOG3824 Huntingtin interacting 95.8 0.024 5.1E-07 53.9 6.6 72 128-213 120-191 (472)
223 COG4976 Predicted methyltransf 95.7 0.012 2.5E-07 53.8 4.1 63 132-208 3-65 (287)
224 PF13374 TPR_10: Tetratricopep 95.7 0.015 3.3E-07 36.2 3.6 30 172-201 2-31 (42)
225 COG3071 HemY Uncharacterized e 95.7 0.048 1E-06 52.5 8.2 69 118-201 322-390 (400)
226 PF10602 RPN7: 26S proteasome 95.6 0.15 3.3E-06 43.4 10.2 98 124-232 36-139 (177)
227 PF14853 Fis1_TPR_C: Fis1 C-te 95.5 0.031 6.8E-07 39.2 4.8 34 125-158 2-35 (53)
228 KOG1310 WD40 repeat protein [G 95.5 0.03 6.4E-07 56.3 6.3 99 108-225 394-495 (758)
229 COG3914 Spy Predicted O-linked 95.5 0.16 3.4E-06 51.3 11.4 92 107-212 48-142 (620)
230 PF12968 DUF3856: Domain of Un 95.5 0.058 1.3E-06 44.9 6.9 69 123-201 54-129 (144)
231 KOG2471 TPR repeat-containing 95.3 0.019 4.2E-07 57.1 4.3 88 124-217 283-378 (696)
232 PF15015 NYD-SP12_N: Spermatog 95.2 0.096 2.1E-06 51.4 8.7 101 129-229 181-285 (569)
233 PRK10941 hypothetical protein; 95.2 0.051 1.1E-06 49.6 6.5 61 96-158 189-249 (269)
234 COG4105 ComL DNA uptake lipopr 95.2 0.79 1.7E-05 41.9 14.1 136 87-228 34-226 (254)
235 KOG3785 Uncharacterized conser 95.2 0.11 2.4E-06 50.4 8.8 119 105-229 74-208 (557)
236 KOG4340 Uncharacterized conser 95.2 0.04 8.6E-07 52.3 5.8 95 122-230 142-265 (459)
237 PF12862 Apc5: Anaphase-promot 95.2 0.092 2E-06 39.9 6.9 68 132-204 6-73 (94)
238 PF10516 SHNi-TPR: SHNi-TPR; 95.2 0.03 6.4E-07 36.9 3.5 32 124-155 1-32 (38)
239 PF05843 Suf: Suppressor of fo 95.2 0.19 4.2E-06 45.3 10.0 94 125-232 2-96 (280)
240 PF14561 TPR_20: Tetratricopep 95.0 0.16 3.4E-06 38.9 7.8 68 142-223 6-75 (90)
241 PF09613 HrpB1_HrpK: Bacterial 95.0 0.37 8E-06 41.2 10.6 85 103-204 25-109 (160)
242 KOG1310 WD40 repeat protein [G 95.0 0.042 9.2E-07 55.2 5.5 95 121-229 371-468 (758)
243 KOG2796 Uncharacterized conser 95.0 0.036 7.9E-07 51.7 4.7 71 122-206 250-320 (366)
244 KOG1130 Predicted G-alpha GTPa 94.9 0.059 1.3E-06 53.0 6.3 96 123-230 234-339 (639)
245 PF12968 DUF3856: Domain of Un 94.9 0.47 1E-05 39.6 10.5 103 125-232 8-126 (144)
246 PF14561 TPR_20: Tetratricopep 94.9 0.31 6.7E-06 37.3 9.0 41 118-158 16-56 (90)
247 COG4976 Predicted methyltransf 94.6 0.053 1.1E-06 49.6 4.7 56 101-158 8-63 (287)
248 KOG0529 Protein geranylgeranyl 94.4 0.39 8.5E-06 46.7 10.4 99 103-217 90-194 (421)
249 KOG3081 Vesicle coat complex C 94.1 0.63 1.4E-05 43.3 10.7 111 121-231 134-266 (299)
250 KOG1915 Cell cycle control pro 93.8 0.6 1.3E-05 46.8 10.5 106 107-231 385-496 (677)
251 PF08424 NRDE-2: NRDE-2, neces 93.5 1.5 3.2E-05 40.5 12.2 98 118-231 13-127 (321)
252 PF10516 SHNi-TPR: SHNi-TPR; 93.2 0.12 2.6E-06 34.1 3.3 30 173-202 2-31 (38)
253 PF07720 TPR_3: Tetratricopept 92.7 0.38 8.2E-06 31.2 5.0 34 124-157 1-36 (36)
254 PF04184 ST7: ST7 protein; In 92.7 0.96 2.1E-05 45.2 10.0 113 117-231 195-320 (539)
255 PF07721 TPR_4: Tetratricopept 92.6 0.15 3.3E-06 30.1 2.8 26 124-149 1-26 (26)
256 PF09613 HrpB1_HrpK: Bacterial 92.1 3 6.5E-05 35.7 11.2 84 125-222 11-94 (160)
257 COG3118 Thioredoxin domain-con 92.1 1.6 3.5E-05 40.9 10.3 86 103-204 149-268 (304)
258 COG2912 Uncharacterized conser 92.0 0.24 5.2E-06 45.6 4.7 53 104-158 197-249 (269)
259 KOG3364 Membrane protein invol 92.0 1.2 2.5E-05 37.8 8.3 78 123-213 31-112 (149)
260 PF04910 Tcf25: Transcriptiona 91.8 2.1 4.5E-05 40.5 10.9 94 118-211 34-143 (360)
261 PF13281 DUF4071: Domain of un 91.6 1.5 3.3E-05 42.1 9.8 99 120-226 175-279 (374)
262 PF09986 DUF2225: Uncharacteri 91.5 1.1 2.4E-05 39.5 8.1 75 122-204 116-197 (214)
263 KOG1915 Cell cycle control pro 91.4 1.3 2.8E-05 44.4 9.4 49 107-157 92-140 (677)
264 PF13281 DUF4071: Domain of un 91.4 3.1 6.8E-05 40.0 11.7 64 94-158 185-260 (374)
265 PF10300 DUF3808: Protein of u 91.3 0.9 1.9E-05 44.3 8.1 81 137-231 246-330 (468)
266 TIGR02561 HrpB1_HrpK type III 91.2 3.5 7.6E-05 35.2 10.5 51 106-158 28-78 (153)
267 COG2976 Uncharacterized protei 91.1 1 2.2E-05 40.1 7.5 90 103-207 104-194 (207)
268 COG3914 Spy Predicted O-linked 91.0 1.1 2.4E-05 45.4 8.5 83 118-208 95-178 (620)
269 KOG2053 Mitochondrial inherita 90.8 1 2.2E-05 47.5 8.3 81 137-231 22-102 (932)
270 KOG0530 Protein farnesyltransf 90.8 5.1 0.00011 37.5 12.0 149 64-228 15-169 (318)
271 PF07720 TPR_3: Tetratricopept 90.5 0.52 1.1E-05 30.5 3.9 31 175-205 4-36 (36)
272 COG2976 Uncharacterized protei 90.2 1.6 3.4E-05 38.9 7.8 92 128-232 93-185 (207)
273 KOG2471 TPR repeat-containing 89.9 0.63 1.4E-05 46.7 5.6 106 119-232 235-361 (696)
274 PF02259 FAT: FAT domain; Int 89.8 9.1 0.0002 34.0 12.7 119 96-214 154-300 (352)
275 KOG0546 HSP90 co-chaperone CPR 88.7 0.3 6.5E-06 46.7 2.4 72 123-208 274-345 (372)
276 KOG4507 Uncharacterized conser 88.6 2.5 5.5E-05 43.4 8.9 68 127-208 645-712 (886)
277 KOG3081 Vesicle coat complex C 88.1 6.6 0.00014 36.7 10.6 74 119-206 202-276 (299)
278 PF10579 Rapsyn_N: Rapsyn N-te 87.7 2.2 4.8E-05 32.7 6.1 54 176-229 10-66 (80)
279 KOG3824 Huntingtin interacting 87.2 0.85 1.9E-05 43.7 4.4 59 98-158 126-184 (472)
280 PF10255 Paf67: RNA polymerase 87.0 1.4 3E-05 42.8 5.9 64 129-200 127-192 (404)
281 COG5191 Uncharacterized conser 86.5 3.6 7.7E-05 39.5 8.1 79 118-209 101-179 (435)
282 COG4941 Predicted RNA polymera 86.4 2.8 6E-05 40.5 7.3 94 103-211 311-404 (415)
283 KOG2396 HAT (Half-A-TPR) repea 85.7 7.1 0.00015 39.3 10.0 86 107-208 90-176 (568)
284 KOG2047 mRNA splicing factor [ 85.2 11 0.00025 39.1 11.4 104 118-232 343-451 (835)
285 KOG3783 Uncharacterized conser 85.0 6.1 0.00013 39.8 9.3 83 118-212 261-343 (546)
286 KOG1941 Acetylcholine receptor 84.9 2.6 5.5E-05 41.3 6.4 99 125-231 123-231 (518)
287 PF11207 DUF2989: Protein of u 84.8 6.5 0.00014 34.9 8.5 145 16-191 47-197 (203)
288 KOG4507 Uncharacterized conser 83.9 2.2 4.7E-05 43.9 5.7 94 116-221 205-298 (886)
289 PF08631 SPO22: Meiosis protei 83.2 3.6 7.7E-05 37.0 6.4 60 135-201 4-65 (278)
290 COG5191 Uncharacterized conser 82.9 1.4 3.1E-05 42.1 3.8 57 100-158 119-176 (435)
291 PF02259 FAT: FAT domain; Int 82.6 5.9 0.00013 35.2 7.5 36 123-158 251-292 (352)
292 KOG2610 Uncharacterized conser 82.5 1.4 3.1E-05 42.6 3.7 59 125-197 176-234 (491)
293 KOG1070 rRNA processing protei 82.4 16 0.00034 41.0 11.6 112 105-232 1547-1660(1710)
294 PF10579 Rapsyn_N: Rapsyn N-te 82.4 7.3 0.00016 29.9 6.8 67 124-201 6-72 (80)
295 KOG2396 HAT (Half-A-TPR) repea 82.3 2.5 5.5E-05 42.4 5.4 53 104-158 121-174 (568)
296 PF04053 Coatomer_WDAD: Coatom 82.2 2.7 5.8E-05 41.0 5.5 88 118-232 341-428 (443)
297 PF10373 EST1_DNA_bind: Est1 D 82.2 6.1 0.00013 34.2 7.3 62 143-218 1-62 (278)
298 PF12862 Apc5: Anaphase-promot 81.9 2.9 6.3E-05 31.6 4.6 36 123-158 40-75 (94)
299 KOG1586 Protein required for f 81.8 12 0.00026 34.7 9.1 101 123-232 73-180 (288)
300 cd02682 MIT_AAA_Arch MIT: doma 81.7 2.4 5.2E-05 31.9 4.0 37 122-158 4-47 (75)
301 KOG1070 rRNA processing protei 81.1 20 0.00043 40.3 11.8 112 93-208 1428-1566(1710)
302 PF07721 TPR_4: Tetratricopept 81.0 1.8 3.9E-05 25.4 2.4 21 176-196 5-25 (26)
303 TIGR02561 HrpB1_HrpK type III 80.6 5.7 0.00012 33.9 6.3 27 132-158 18-44 (153)
304 PF04184 ST7: ST7 protein; In 80.1 14 0.00031 37.1 9.7 61 126-198 261-321 (539)
305 KOG0530 Protein farnesyltransf 80.0 3.9 8.3E-05 38.3 5.4 93 107-215 97-190 (318)
306 PF08631 SPO22: Meiosis protei 79.7 43 0.00092 30.0 12.0 122 105-230 10-145 (278)
307 PF04781 DUF627: Protein of un 78.9 15 0.00032 29.8 7.8 70 130-210 2-82 (111)
308 KOG1941 Acetylcholine receptor 78.3 13 0.00029 36.5 8.6 103 125-232 163-272 (518)
309 PF10373 EST1_DNA_bind: Est1 D 78.3 3.8 8.3E-05 35.5 4.7 46 107-154 1-46 (278)
310 COG3629 DnrI DNA-binding trans 78.2 10 0.00022 35.1 7.7 66 121-200 150-215 (280)
311 PRK15180 Vi polysaccharide bio 77.9 10 0.00022 38.6 7.9 100 118-231 317-416 (831)
312 PF14863 Alkyl_sulf_dimr: Alky 77.9 5.2 0.00011 33.3 5.2 50 172-221 70-119 (141)
313 KOG2047 mRNA splicing factor [ 76.8 19 0.00041 37.6 9.6 116 103-231 492-611 (835)
314 PF04212 MIT: MIT (microtubule 76.5 6.5 0.00014 28.0 4.8 30 124-153 5-34 (69)
315 KOG1585 Protein required for f 76.5 38 0.00082 31.7 10.7 34 125-158 32-65 (308)
316 KOG4814 Uncharacterized conser 75.8 22 0.00048 37.1 9.8 95 129-231 359-453 (872)
317 KOG1585 Protein required for f 74.2 35 0.00075 32.0 9.8 130 93-231 36-175 (308)
318 PF08424 NRDE-2: NRDE-2, neces 74.0 26 0.00057 32.2 9.3 116 102-230 45-178 (321)
319 PF09986 DUF2225: Uncharacteri 73.9 8.2 0.00018 34.0 5.6 55 101-155 138-196 (214)
320 KOG0529 Protein geranylgeranyl 73.8 37 0.00079 33.4 10.4 101 103-219 44-158 (421)
321 cd02681 MIT_calpain7_1 MIT: do 73.2 5.7 0.00012 29.8 3.8 31 123-153 5-35 (76)
322 cd02683 MIT_1 MIT: domain cont 70.9 8.6 0.00019 28.7 4.3 31 123-153 5-35 (77)
323 KOG2300 Uncharacterized conser 68.4 40 0.00086 34.3 9.4 97 122-232 365-471 (629)
324 smart00386 HAT HAT (Half-A-TPR 68.3 8.9 0.00019 21.8 3.3 26 186-213 1-26 (33)
325 COG4455 ImpE Protein of avirul 67.8 25 0.00053 32.4 7.3 70 133-216 10-80 (273)
326 cd02682 MIT_AAA_Arch MIT: doma 67.7 11 0.00023 28.5 4.3 33 188-220 29-61 (75)
327 COG3629 DnrI DNA-binding trans 67.7 25 0.00053 32.7 7.5 60 172-231 153-212 (280)
328 COG0790 FOG: TPR repeat, SEL1 67.6 85 0.0019 27.5 12.2 47 105-155 94-144 (292)
329 PF15015 NYD-SP12_N: Spermatog 67.6 8.1 0.00017 38.5 4.5 59 127-199 231-289 (569)
330 KOG1550 Extracellular protein 67.4 1E+02 0.0022 30.8 12.2 102 107-230 231-352 (552)
331 KOG1550 Extracellular protein 67.3 39 0.00084 33.7 9.3 91 123-231 287-389 (552)
332 PF10602 RPN7: 26S proteasome 67.2 22 0.00048 30.2 6.6 62 170-232 34-99 (177)
333 KOG0546 HSP90 co-chaperone CPR 66.9 5.2 0.00011 38.5 3.0 41 118-158 303-343 (372)
334 KOG2581 26S proteasome regulat 66.8 5.6 0.00012 39.2 3.3 88 61-158 194-281 (493)
335 KOG1464 COP9 signalosome, subu 66.6 16 0.00034 34.9 6.0 54 137-200 40-93 (440)
336 PRK13184 pknD serine/threonine 65.9 30 0.00065 37.2 8.7 74 123-211 511-591 (932)
337 COG3898 Uncharacterized membra 65.8 89 0.0019 31.2 11.1 107 118-229 257-386 (531)
338 KOG1914 mRNA cleavage and poly 65.5 71 0.0015 32.8 10.6 72 118-204 14-85 (656)
339 TIGR03504 FimV_Cterm FimV C-te 64.8 11 0.00023 25.5 3.4 29 176-205 3-31 (44)
340 PRK11619 lytic murein transgly 64.6 53 0.0011 33.7 9.9 49 184-232 324-372 (644)
341 PF07079 DUF1347: Protein of u 64.1 17 0.00037 36.4 6.0 54 177-231 467-520 (549)
342 smart00745 MIT Microtubule Int 63.5 17 0.00036 26.2 4.6 29 125-153 9-37 (77)
343 KOG3617 WD40 and TPR repeat-co 63.1 34 0.00073 37.0 8.1 112 119-233 797-939 (1416)
344 PF04781 DUF627: Protein of un 62.2 25 0.00054 28.5 5.7 86 100-201 8-107 (111)
345 PF04910 Tcf25: Transcriptiona 62.1 1E+02 0.0022 29.2 10.7 92 125-232 104-219 (360)
346 KOG3677 RNA polymerase I-assoc 61.1 12 0.00027 37.0 4.4 56 133-199 244-299 (525)
347 PF08238 Sel1: Sel1 repeat; I 61.0 22 0.00047 21.5 4.2 31 124-154 1-38 (39)
348 cd02678 MIT_VPS4 MIT: domain c 60.8 19 0.00042 26.2 4.5 30 124-153 6-35 (75)
349 KOG1586 Protein required for f 59.9 62 0.0013 30.1 8.4 79 123-208 153-231 (288)
350 cd02656 MIT MIT: domain contai 59.8 21 0.00046 25.7 4.6 30 124-153 6-35 (75)
351 cd02679 MIT_spastin MIT: domai 59.6 17 0.00037 27.5 4.1 30 124-153 8-37 (79)
352 PF12854 PPR_1: PPR repeat 58.4 24 0.00053 21.8 4.0 27 123-149 6-32 (34)
353 COG3947 Response regulator con 57.8 31 0.00068 32.9 6.3 54 176-229 283-336 (361)
354 COG3898 Uncharacterized membra 57.6 1.1E+02 0.0025 30.5 10.2 90 124-231 120-213 (531)
355 cd02680 MIT_calpain7_2 MIT: do 57.4 16 0.00035 27.5 3.6 23 179-201 13-35 (75)
356 KOG1914 mRNA cleavage and poly 57.3 30 0.00066 35.4 6.5 92 121-233 276-393 (656)
357 TIGR03504 FimV_Cterm FimV C-te 56.8 21 0.00046 24.1 3.8 25 128-152 3-27 (44)
358 COG4259 Uncharacterized protei 54.6 37 0.00081 27.7 5.4 41 118-158 66-106 (121)
359 PF12854 PPR_1: PPR repeat 54.5 29 0.00062 21.5 3.9 24 209-232 10-33 (34)
360 PF02064 MAS20: MAS20 protein 54.1 23 0.0005 28.9 4.3 29 128-156 67-95 (121)
361 KOG0686 COP9 signalosome, subu 53.9 81 0.0018 31.3 8.6 97 125-232 151-255 (466)
362 PF07219 HemY_N: HemY protein 53.7 47 0.001 25.8 5.9 31 176-206 63-93 (108)
363 smart00671 SEL1 Sel1-like repe 52.8 30 0.00066 20.4 3.8 30 125-154 2-35 (36)
364 cd02683 MIT_1 MIT: domain cont 52.1 51 0.0011 24.5 5.6 59 140-220 3-61 (77)
365 cd02684 MIT_2 MIT: domain cont 51.5 31 0.00068 25.5 4.3 30 124-153 6-35 (75)
366 KOG3617 WD40 and TPR repeat-co 51.5 94 0.002 33.9 9.1 101 122-231 910-1033(1416)
367 PF11817 Foie-gras_1: Foie gra 51.4 89 0.0019 27.6 8.0 86 138-231 152-243 (247)
368 PF13041 PPR_2: PPR repeat fam 51.3 43 0.00092 21.8 4.6 32 123-154 2-33 (50)
369 KOG3364 Membrane protein invol 50.5 19 0.0004 30.7 3.3 74 74-158 31-105 (149)
370 PF04212 MIT: MIT (microtubule 49.9 24 0.00052 25.0 3.4 38 178-215 11-55 (69)
371 PF14863 Alkyl_sulf_dimr: Alky 49.7 38 0.00082 28.2 5.0 36 123-158 69-104 (141)
372 PRK15180 Vi polysaccharide bio 49.4 63 0.0014 33.1 7.2 79 136-228 301-379 (831)
373 PF11846 DUF3366: Domain of un 49.0 43 0.00092 28.1 5.3 52 139-205 126-177 (193)
374 cd02680 MIT_calpain7_2 MIT: do 48.9 30 0.00065 26.0 3.9 30 124-153 6-35 (75)
375 PF11846 DUF3366: Domain of un 48.5 38 0.00082 28.4 5.0 36 122-157 142-177 (193)
376 smart00745 MIT Microtubule Int 47.4 54 0.0012 23.5 5.0 20 188-207 31-50 (77)
377 KOG4151 Myosin assembly protei 47.3 29 0.00064 36.4 4.7 28 129-156 58-85 (748)
378 KOG3783 Uncharacterized conser 46.3 1.3E+02 0.0028 30.7 8.9 69 126-204 451-523 (546)
379 COG4941 Predicted RNA polymera 46.1 27 0.00059 33.9 4.0 36 123-158 364-399 (415)
380 COG4649 Uncharacterized protei 45.2 2.3E+02 0.005 25.4 11.5 53 103-155 73-125 (221)
381 cd02677 MIT_SNX15 MIT: domain 45.2 40 0.00086 25.0 4.0 30 124-153 6-35 (75)
382 KOG4814 Uncharacterized conser 44.7 35 0.00076 35.7 4.8 56 177-232 359-420 (872)
383 KOG2041 WD40 repeat protein [G 44.1 99 0.0021 33.1 7.9 98 129-231 739-877 (1189)
384 cd02678 MIT_VPS4 MIT: domain c 42.5 49 0.0011 24.1 4.1 33 188-220 29-61 (75)
385 PF01535 PPR: PPR repeat; Int 42.1 38 0.00083 19.1 2.9 25 177-201 5-29 (31)
386 PF10255 Paf67: RNA polymerase 42.0 21 0.00045 34.8 2.6 33 121-153 161-193 (404)
387 PF07079 DUF1347: Protein of u 41.8 2.6E+02 0.0056 28.4 10.1 94 127-229 9-102 (549)
388 COG0790 FOG: TPR repeat, SEL1 40.9 2.5E+02 0.0053 24.5 12.4 93 105-220 130-236 (292)
389 PF13934 ELYS: Nuclear pore co 40.9 65 0.0014 28.5 5.4 88 125-232 42-134 (226)
390 KOG3807 Predicted membrane pro 40.8 99 0.0021 30.4 6.9 25 134-158 194-218 (556)
391 PF08311 Mad3_BUB1_I: Mad3/BUB 40.5 1.2E+02 0.0027 24.2 6.6 66 86-151 60-126 (126)
392 cd02681 MIT_calpain7_1 MIT: do 40.1 38 0.00082 25.4 3.3 14 142-155 5-18 (76)
393 PF10345 Cohesin_load: Cohesin 38.7 3.9E+02 0.0084 26.8 11.1 118 105-231 38-164 (608)
394 COG3014 Uncharacterized protei 38.5 90 0.0019 30.6 6.2 77 144-231 41-150 (449)
395 PF01239 PPTA: Protein prenylt 38.5 87 0.0019 18.7 4.3 29 191-219 2-30 (31)
396 COG3947 Response regulator con 36.5 96 0.0021 29.7 6.0 59 126-198 281-339 (361)
397 COG5536 BET4 Protein prenyltra 35.9 1.6E+02 0.0035 28.0 7.3 101 103-213 89-191 (328)
398 cd02656 MIT MIT: domain contai 35.3 66 0.0014 23.1 3.9 32 188-219 29-60 (75)
399 TIGR00756 PPR pentatricopeptid 35.0 87 0.0019 17.6 4.0 27 127-153 3-29 (35)
400 KOG4151 Myosin assembly protei 34.6 67 0.0015 33.8 5.0 86 107-208 72-163 (748)
401 COG2909 MalT ATP-dependent tra 34.3 3.5E+02 0.0075 29.3 10.2 70 123-201 457-526 (894)
402 KOG2422 Uncharacterized conser 34.3 3.5E+02 0.0075 28.2 9.8 91 94-203 348-450 (665)
403 PF03745 DUF309: Domain of unk 34.0 1.7E+02 0.0038 20.8 6.4 52 177-229 4-62 (62)
404 PHA02537 M terminase endonucle 33.9 3.6E+02 0.0077 24.4 9.4 99 132-232 91-204 (230)
405 PF15469 Sec5: Exocyst complex 33.3 2E+02 0.0043 24.0 7.0 73 135-211 97-178 (182)
406 COG4455 ImpE Protein of avirul 33.3 1.3E+02 0.0029 27.8 6.2 51 180-230 9-59 (273)
407 TIGR02508 type_III_yscG type I 33.1 78 0.0017 25.8 4.2 47 178-229 45-91 (115)
408 PF11817 Foie-gras_1: Foie gra 32.8 2.1E+02 0.0045 25.3 7.3 63 125-195 179-241 (247)
409 PHA02537 M terminase endonucle 32.8 59 0.0013 29.3 3.9 35 124-158 169-212 (230)
410 TIGR00985 3a0801s04tom mitocho 32.1 74 0.0016 27.0 4.1 29 128-156 94-123 (148)
411 PF13812 PPR_3: Pentatricopept 31.9 1E+02 0.0023 17.6 4.3 28 126-153 3-30 (34)
412 PF03745 DUF309: Domain of unk 31.4 1.9E+02 0.0042 20.5 5.9 60 128-195 3-62 (62)
413 cd02679 MIT_spastin MIT: domai 31.1 60 0.0013 24.6 3.1 18 138-155 3-20 (79)
414 KOG0276 Vesicle coat complex C 29.5 3.2E+02 0.007 28.8 8.7 36 119-154 661-696 (794)
415 PF10345 Cohesin_load: Cohesin 29.4 4E+02 0.0087 26.7 9.5 67 125-196 362-428 (608)
416 PF09797 NatB_MDM20: N-acetylt 29.1 1.5E+02 0.0033 27.4 6.1 47 185-231 196-242 (365)
417 KOG4056 Translocase of outer m 28.9 88 0.0019 26.5 4.0 31 128-158 85-115 (143)
418 KOG1839 Uncharacterized protei 28.3 1.8E+02 0.0039 32.5 7.1 117 108-231 958-1082(1236)
419 PF07980 SusD: SusD family; I 28.1 1E+02 0.0022 26.1 4.4 31 122-152 131-161 (266)
420 cd02684 MIT_2 MIT: domain cont 28.0 74 0.0016 23.5 3.1 16 140-155 3-18 (75)
421 PF09477 Type_III_YscG: Bacter 27.9 2.1E+02 0.0046 23.5 5.9 49 177-230 45-93 (116)
422 PF07980 SusD: SusD family; I 27.5 73 0.0016 27.0 3.4 31 170-200 131-161 (266)
423 PRK13184 pknD serine/threonine 27.3 2.2E+02 0.0047 30.9 7.5 89 131-231 482-577 (932)
424 KOG2422 Uncharacterized conser 26.7 5.3E+02 0.011 26.9 9.6 93 118-210 278-381 (665)
425 PF02064 MAS20: MAS20 protein 26.6 94 0.002 25.4 3.7 31 176-206 67-97 (121)
426 PF13830 DUF4192: Domain of un 26.6 2E+02 0.0044 26.4 6.4 54 105-158 255-308 (324)
427 PF06466 PCAF_N: PCAF (P300/CB 25.5 70 0.0015 29.5 3.0 40 26-79 108-147 (252)
428 KOG0985 Vesicle coat protein c 24.9 4E+02 0.0086 30.1 8.7 61 121-200 1101-1161(1666)
429 KOG0985 Vesicle coat protein c 24.9 2.1E+02 0.0046 32.0 6.8 52 177-233 1109-1160(1666)
430 PF07219 HemY_N: HemY protein 24.9 2.5E+02 0.0054 21.7 5.8 34 123-156 58-91 (108)
431 PF13934 ELYS: Nuclear pore co 24.7 2.7E+02 0.0058 24.5 6.6 80 128-227 82-161 (226)
432 PF00244 14-3-3: 14-3-3 protei 24.5 2E+02 0.0043 25.5 5.8 49 141-200 143-197 (236)
433 PF09205 DUF1955: Domain of un 24.1 3.1E+02 0.0067 23.6 6.4 58 94-153 92-149 (161)
434 KOG0276 Vesicle coat complex C 23.3 2.1E+02 0.0045 30.1 6.1 51 178-233 643-693 (794)
435 PRK15490 Vi polysaccharide bio 23.1 3.5E+02 0.0077 27.8 7.8 65 121-204 39-103 (578)
436 PF13226 DUF4034: Domain of un 23.0 2.8E+02 0.0061 25.7 6.6 41 118-158 71-133 (277)
437 TIGR02710 CRISPR-associated pr 23.0 7E+02 0.015 24.2 9.7 103 120-229 124-269 (380)
438 KOG1258 mRNA processing protei 22.6 3.4E+02 0.0074 27.9 7.5 108 104-230 28-138 (577)
439 PF08626 TRAPPC9-Trs120: Trans 21.9 96 0.0021 34.0 3.8 41 123-168 241-281 (1185)
440 COG4649 Uncharacterized protei 21.9 4.5E+02 0.0098 23.6 7.3 71 120-203 55-125 (221)
441 COG5107 RNA14 Pre-mRNA 3'-end 21.3 6.5E+02 0.014 25.9 8.9 105 110-233 290-424 (660)
442 COG2909 MalT ATP-dependent tra 21.1 8.6E+02 0.019 26.5 10.3 104 122-232 413-523 (894)
443 COG5091 SGT1 Suppressor of G2 20.8 2.3E+02 0.0051 27.0 5.5 73 138-219 53-125 (368)
444 cd08977 SusD starch binding ou 20.7 2.6E+02 0.0055 25.5 5.8 59 140-201 141-210 (359)
445 PF11207 DUF2989: Protein of u 20.6 2.7E+02 0.0059 24.8 5.7 48 178-225 145-197 (203)
446 PF09670 Cas_Cas02710: CRISPR- 20.5 4.2E+02 0.0092 25.2 7.4 55 176-231 135-194 (379)
447 PF08626 TRAPPC9-Trs120: Trans 20.5 92 0.002 34.1 3.3 41 175-216 245-285 (1185)
No 1
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.64 E-value=2.2e-15 Score=122.77 Aligned_cols=100 Identities=9% Similarity=-0.060 Sum_probs=50.9
Q ss_pred HHhccCcchHHHHHHHHhcccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhh
Q 026773 98 FTRRLFIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILK 177 (233)
Q Consensus 98 ~~r~~~~~~a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~ 177 (233)
+...+-..+|...|..++ .++|+++++|..+|.++..+|++++|+..|++|++++|+++ ..+++
T Consensus 34 ~~~~g~~~~A~~~~~~al--~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~-----~a~~~--------- 97 (144)
T PRK15359 34 SWQEGDYSRAVIDFSWLV--MAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHP-----EPVYQ--------- 97 (144)
T ss_pred HHHcCCHHHHHHHHHHHH--HcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCc-----HHHHH---------
Confidence 333333344445555554 55555555555555555555555555555555555555554 22222
Q ss_pred hHHHHHHcCCcHHHHHHHHHHHHcCCCCHHHHHHHH
Q 026773 178 KLIRVSHFNRFEEGAEQFRIDVAQNPNDTEESIWCF 213 (233)
Q Consensus 178 rG~al~~lGryeeAi~~f~kAL~lnP~d~e~~~~~~ 213 (233)
+|.++..+|++++|++.|+++++++|++++.+..++
T Consensus 98 lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~~ 133 (144)
T PRK15359 98 TGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIRQ 133 (144)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHH
Confidence 555555555555555555555555555555444443
No 2
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.62 E-value=8.1e-15 Score=131.81 Aligned_cols=121 Identities=17% Similarity=0.239 Sum_probs=104.7
Q ss_pred chhHHHhccCcchHHHHHHHHhcccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhh
Q 026773 94 RAPTFTRRLFIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVG 173 (233)
Q Consensus 94 ~~~~~~r~~~~~~a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~ 173 (233)
....+.+.+....|...++.++ +++|+++.+|+.+|.++..+|++++|+++|++|++++|++. ..++
T Consensus 70 ~g~~~~~~g~~~~A~~~~~~Al--~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~-----~a~~------ 136 (296)
T PRK11189 70 RGVLYDSLGLRALARNDFSQAL--ALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYN-----YAYL------ 136 (296)
T ss_pred HHHHHHHCCCHHHHHHHHHHHH--HcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH-----HHHH------
Confidence 3445566667778888999999 89999999999999999999999999999999999999988 3433
Q ss_pred hhhhhHHHHHHcCCcHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHh
Q 026773 174 IILKKLIRVSHFNRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLE 231 (233)
Q Consensus 174 a~~~rG~al~~lGryeeAi~~f~kAL~lnP~d~e~~~~~~l~~a~Lg~~dEA~~~~l~ 231 (233)
++|.+++..|++++|+++|+++++++|+++...+|..++. ..++.++|...+.+
T Consensus 137 ---~lg~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~~~l~~-~~~~~~~A~~~l~~ 190 (296)
T PRK11189 137 ---NRGIALYYGGRYELAQDDLLAFYQDDPNDPYRALWLYLAE-SKLDPKQAKENLKQ 190 (296)
T ss_pred ---HHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-ccCCHHHHHHHHHH
Confidence 5999999999999999999999999999997667765544 45789999998854
No 3
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=99.58 E-value=2.4e-14 Score=116.62 Aligned_cols=106 Identities=13% Similarity=0.142 Sum_probs=97.2
Q ss_pred HHHHHHHhcccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHHHcCC
Q 026773 108 SGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSHFNR 187 (233)
Q Consensus 108 ~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~lGr 187 (233)
+..++.++ +++|++ +..+|.++...|++++|++.|+++++++|+++ .++. ++|.++..+|+
T Consensus 13 ~~~~~~al--~~~p~~---~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~-----~a~~---------~lg~~~~~~g~ 73 (144)
T PRK15359 13 EDILKQLL--SVDPET---VYASGYASWQEGDYSRAVIDFSWLVMAQPWSW-----RAHI---------ALAGTWMMLKE 73 (144)
T ss_pred HHHHHHHH--HcCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcH-----HHHH---------HHHHHHHHHhh
Confidence 56888888 888875 67899999999999999999999999999988 4443 59999999999
Q ss_pred cHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhh
Q 026773 188 FEEGAEQFRIDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLEA 232 (233)
Q Consensus 188 yeeAi~~f~kAL~lnP~d~e~~~~~~l~~a~Lg~~dEA~~~~l~~ 232 (233)
+++|++.|+++++++|++++.+..++.|+..+|++++|+..|.++
T Consensus 74 ~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~A 118 (144)
T PRK15359 74 YTTAINFYGHALMLDASHPEPVYQTGVCLKMMGEPGLAREAFQTA 118 (144)
T ss_pred HHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999998764
No 4
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.53 E-value=2.1e-13 Score=117.00 Aligned_cols=112 Identities=8% Similarity=0.001 Sum_probs=99.5
Q ss_pred chHHHHHHHHhcccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHH-H
Q 026773 105 PSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRV-S 183 (233)
Q Consensus 105 ~~a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al-~ 183 (233)
.++...+..++ +.+|+++++|..+|.++...|++++|+..|++|++++|+++ ..+. +.|.++ +
T Consensus 56 ~~~i~~l~~~L--~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~-----~~~~---------~lA~aL~~ 119 (198)
T PRK10370 56 EAQLQALQDKI--RANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENA-----ELYA---------ALATVLYY 119 (198)
T ss_pred HHHHHHHHHHH--HHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH-----HHHH---------HHHHHHHH
Confidence 34555666667 89999999999999999999999999999999999999998 4433 489986 6
Q ss_pred HcCC--cHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhh
Q 026773 184 HFNR--FEEGAEQFRIDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLEA 232 (233)
Q Consensus 184 ~lGr--yeeAi~~f~kAL~lnP~d~e~~~~~~l~~a~Lg~~dEA~~~~l~~ 232 (233)
..|+ +++|.+.++++++++|++++.+..++.+..++|++++|+..+.++
T Consensus 120 ~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~a 170 (198)
T PRK10370 120 QAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKV 170 (198)
T ss_pred hcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 7788 599999999999999999999999999999999999999999875
No 5
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.53 E-value=3.9e-14 Score=129.71 Aligned_cols=112 Identities=13% Similarity=0.171 Sum_probs=95.0
Q ss_pred hHHHhccCcchHHHHHHHHhcccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhh
Q 026773 96 PTFTRRLFIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGII 175 (233)
Q Consensus 96 ~~~~r~~~~~~a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~ 175 (233)
..+-+.....+|.+.|+++| +++|+||.-|.+|+.+|.++|.|+.||+|+++||++||++. ..|
T Consensus 89 N~~m~~~~Y~eAv~kY~~AI--~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~ys-----kay--------- 152 (304)
T KOG0553|consen 89 NKLMKNKDYQEAVDKYTEAI--ELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYS-----KAY--------- 152 (304)
T ss_pred HHHHHhhhHHHHHHHHHHHH--hcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHH-----HHH---------
Confidence 34555566678999999999 99999999999999999999999999999999999999877 333
Q ss_pred hhhHHHHHHcCCcHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHH
Q 026773 176 LKKLIRVSHFNRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQLYGVD 223 (233)
Q Consensus 176 ~~rG~al~~lGryeeAi~~f~kAL~lnP~d~e~~~~~~l~~a~Lg~~d 223 (233)
-.+|.+++.+|++++|++.|.++|+++|++....-.+..+.-+++..+
T Consensus 153 ~RLG~A~~~~gk~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e~~ 200 (304)
T KOG0553|consen 153 GRLGLAYLALGKYEEAIEAYKKALELDPDNESYKSNLKIAEQKLNEPK 200 (304)
T ss_pred HHHHHHHHccCcHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhcCCC
Confidence 359999999999999999999999999999965555555555555433
No 6
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=99.52 E-value=2.3e-13 Score=106.14 Aligned_cols=107 Identities=17% Similarity=0.202 Sum_probs=92.3
Q ss_pred HHHHHhcccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHHHcCCcH
Q 026773 110 IWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSHFNRFE 189 (233)
Q Consensus 110 i~~~~i~~~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~lGrye 189 (233)
.+..++ +++|+++.+...+|.+++..|++++|++.|+++++++|+++ ..+. ++|.+++.+|+++
T Consensus 5 ~~~~~l--~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~-----~~~~---------~la~~~~~~~~~~ 68 (135)
T TIGR02552 5 TLKDLL--GLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNS-----RYWL---------GLAACCQMLKEYE 68 (135)
T ss_pred hHHHHH--cCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcH-----HHHH---------HHHHHHHHHHHHH
Confidence 445566 78999999999999999999999999999999999999887 3433 4899999999999
Q ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhh
Q 026773 190 EGAEQFRIDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLEA 232 (233)
Q Consensus 190 eAi~~f~kAL~lnP~d~e~~~~~~l~~a~Lg~~dEA~~~~l~~ 232 (233)
+|++.|+++++++|++++.+.+++.|+...|++++|...+.++
T Consensus 69 ~A~~~~~~~~~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 111 (135)
T TIGR02552 69 EAIDAYALAAALDPDDPRPYFHAAECLLALGEPESALKALDLA 111 (135)
T ss_pred HHHHHHHHHHhcCCCChHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 9999999999999999998888899999999999998887654
No 7
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.50 E-value=3.5e-13 Score=121.22 Aligned_cols=112 Identities=14% Similarity=0.090 Sum_probs=97.4
Q ss_pred HHHHHHHHhc-ccCCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHHH
Q 026773 107 VSGIWDALTG-GNNNS-REAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSH 184 (233)
Q Consensus 107 a~~i~~~~i~-~~l~P-~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~ 184 (233)
+...+++++. ..++| +.+..|+.+|.++...|++++|+.+|++|++++|+++ ..+. ++|.++..
T Consensus 45 ~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~-----~a~~---------~lg~~~~~ 110 (296)
T PRK11189 45 ILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPDMA-----DAYN---------YLGIYLTQ 110 (296)
T ss_pred HHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCH-----HHHH---------HHHHHHHH
Confidence 4456666662 13455 4489999999999999999999999999999999998 3433 59999999
Q ss_pred cCCcHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhh
Q 026773 185 FNRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLEA 232 (233)
Q Consensus 185 lGryeeAi~~f~kAL~lnP~d~e~~~~~~l~~a~Lg~~dEA~~~~l~~ 232 (233)
+|++++|+++|+++++++|++...+.+++.++...|++++|...|.++
T Consensus 111 ~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~a 158 (296)
T PRK11189 111 AGNFDAAYEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAF 158 (296)
T ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999988764
No 8
>PRK12370 invasion protein regulator; Provisional
Probab=99.48 E-value=4.2e-13 Score=130.25 Aligned_cols=110 Identities=12% Similarity=0.011 Sum_probs=56.7
Q ss_pred chHHHHHHHHhcccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHHH
Q 026773 105 PSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSH 184 (233)
Q Consensus 105 ~~a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~ 184 (233)
.+|...+.+++ +++|+++.+|..+|.++..+|++++|++.|++|++++|+++ ..++ .+|.++..
T Consensus 321 ~~A~~~~~~Al--~ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~-----~a~~---------~lg~~l~~ 384 (553)
T PRK12370 321 IKAKEHAIKAT--ELDHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISA-----DIKY---------YYGWNLFM 384 (553)
T ss_pred HHHHHHHHHHH--hcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCH-----HHHH---------HHHHHHHH
Confidence 34444555555 55555555555555555555555555555555555555555 2222 24555555
Q ss_pred cCCcHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 026773 185 FNRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFL 230 (233)
Q Consensus 185 lGryeeAi~~f~kAL~lnP~d~e~~~~~~l~~a~Lg~~dEA~~~~l 230 (233)
+|++++|++.++++++++|.++....+...+....|++++|...+.
T Consensus 385 ~G~~~eAi~~~~~Al~l~P~~~~~~~~~~~~~~~~g~~eeA~~~~~ 430 (553)
T PRK12370 385 AGQLEEALQTINECLKLDPTRAAAGITKLWITYYHTGIDDAIRLGD 430 (553)
T ss_pred CCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhccCHHHHHHHHH
Confidence 5555555555555555555544433333333334455555544443
No 9
>PRK12370 invasion protein regulator; Provisional
Probab=99.47 E-value=8.4e-13 Score=128.18 Aligned_cols=118 Identities=15% Similarity=0.033 Sum_probs=103.8
Q ss_pred HhccCcchHHHHHHHHhcccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhh
Q 026773 99 TRRLFIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKK 178 (233)
Q Consensus 99 ~r~~~~~~a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~r 178 (233)
...+-.++|...+++++ +++|+++.+|+.+|.++..+|++++|++.+++|++++|.++ ...+. +
T Consensus 349 ~~~g~~~~A~~~~~~Al--~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~-----~~~~~---------~ 412 (553)
T PRK12370 349 TIHSEYIVGSLLFKQAN--LLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRA-----AAGIT---------K 412 (553)
T ss_pred HHccCHHHHHHHHHHHH--HhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCh-----hhHHH---------H
Confidence 33445677888888888 99999999999999999999999999999999999999987 33333 6
Q ss_pred HHHHHHcCCcHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHhh
Q 026773 179 LIRVSHFNRFEEGAEQFRIDVAQN-PNDTEESIWCFLCEAQLYGVDEARNRFLEA 232 (233)
Q Consensus 179 G~al~~lGryeeAi~~f~kAL~ln-P~d~e~~~~~~l~~a~Lg~~dEA~~~~l~~ 232 (233)
+.+++..|++++|++.++++++.+ |+++..+.+.+.++..+|+.++|+..+.++
T Consensus 413 ~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~ 467 (553)
T PRK12370 413 LWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEI 467 (553)
T ss_pred HHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHh
Confidence 778999999999999999999885 788888888999999999999999998764
No 10
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=99.47 E-value=4.9e-13 Score=124.00 Aligned_cols=105 Identities=15% Similarity=0.214 Sum_probs=95.1
Q ss_pred hccCcchHHHHHHHHhcccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhH
Q 026773 100 RRLFIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKL 179 (233)
Q Consensus 100 r~~~~~~a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG 179 (233)
+.+-...|...|++++ +++|+++.+|.+||.++..+|++++|+.++++||+++|+++ ..++ ++|
T Consensus 14 ~~~~~~~Ai~~~~~Al--~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~-----~a~~---------~lg 77 (356)
T PLN03088 14 VDDDFALAVDLYTQAI--DLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLA-----KAYL---------RKG 77 (356)
T ss_pred HcCCHHHHHHHHHHHH--HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCH-----HHHH---------HHH
Confidence 3345567889999999 99999999999999999999999999999999999999988 4444 499
Q ss_pred HHHHHcCCcHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcC
Q 026773 180 IRVSHFNRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQLY 220 (233)
Q Consensus 180 ~al~~lGryeeAi~~f~kAL~lnP~d~e~~~~~~l~~a~Lg 220 (233)
.+++.+|+|++|+..|+++++++|++++...|...|..++.
T Consensus 78 ~~~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~kl~ 118 (356)
T PLN03088 78 TACMKLEEYQTAKAALEKGASLAPGDSRFTKLIKECDEKIA 118 (356)
T ss_pred HHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999998877663
No 11
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.46 E-value=1e-12 Score=128.12 Aligned_cols=109 Identities=17% Similarity=0.161 Sum_probs=63.9
Q ss_pred HHHHHHHHhcccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHHHcC
Q 026773 107 VSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSHFN 186 (233)
Q Consensus 107 a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~lG 186 (233)
|...+++++ +++|+++++|+.+|.+++.+|++++|+.+|++|++++|++. .. +.++|.+++.+|
T Consensus 384 A~~~~~~al--~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~-----~~---------~~~la~~~~~~g 447 (615)
T TIGR00990 384 AEEDFDKAL--KLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFI-----FS---------HIQLGVTQYKEG 447 (615)
T ss_pred HHHHHHHHH--HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCH-----HH---------HHHHHHHHHHCC
Confidence 444444444 45555555555555555555555555555555555555544 12 124666666666
Q ss_pred CcHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHh
Q 026773 187 RFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLE 231 (233)
Q Consensus 187 ryeeAi~~f~kAL~lnP~d~e~~~~~~l~~a~Lg~~dEA~~~~l~ 231 (233)
++++|+..|+++++.+|++++.+.+.+.++..+|++++|+..|.+
T Consensus 448 ~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 492 (615)
T TIGR00990 448 SIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDT 492 (615)
T ss_pred CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 666666666666666666666666666666666666666666554
No 12
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=99.45 E-value=1.7e-13 Score=96.54 Aligned_cols=68 Identities=28% Similarity=0.457 Sum_probs=63.0
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHHHcC-CcHHHHHHHHHHHH
Q 026773 122 REAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSHFN-RFEEGAEQFRIDVA 200 (233)
Q Consensus 122 ~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~lG-ryeeAi~~f~kAL~ 200 (233)
.+|.+|..+|.+++..|+|++|+..|++||++||+++ ..++ ++|.++..+| ++++|+++|+++++
T Consensus 1 e~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~-----~~~~---------~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 1 ENAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNA-----EAYY---------NLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp TSHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHH-----HHHH---------HHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH-----HHHH---------HHHHHHHHhCccHHHHHHHHHHHHH
Confidence 4789999999999999999999999999999999988 3433 5999999999 79999999999999
Q ss_pred cCC
Q 026773 201 QNP 203 (233)
Q Consensus 201 lnP 203 (233)
+||
T Consensus 67 l~P 69 (69)
T PF13414_consen 67 LDP 69 (69)
T ss_dssp HST
T ss_pred cCc
Confidence 998
No 13
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.45 E-value=1.5e-12 Score=126.93 Aligned_cols=113 Identities=12% Similarity=0.130 Sum_probs=94.5
Q ss_pred cchHHHHHHHHhcccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHH
Q 026773 104 IPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVS 183 (233)
Q Consensus 104 ~~~a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~ 183 (233)
..+|...++.++ +++|+++.+|..+|.++..+|++++|+..|++|++++|+++ ..++ .+|.+++
T Consensus 347 ~~eA~~~~~kal--~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~-----~~~~---------~lg~~~~ 410 (615)
T TIGR00990 347 HLEALADLSKSI--ELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDP-----DIYY---------HRAQLHF 410 (615)
T ss_pred HHHHHHHHHHHH--HcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH-----HHHH---------HHHHHHH
Confidence 345666666666 77888888888888888888888888888888888888877 3333 5999999
Q ss_pred HcCCcHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhh
Q 026773 184 HFNRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLEA 232 (233)
Q Consensus 184 ~lGryeeAi~~f~kAL~lnP~d~e~~~~~~l~~a~Lg~~dEA~~~~l~~ 232 (233)
.+|++++|+++|+++++++|++...+..++.++.++|++++|...|.++
T Consensus 411 ~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~a 459 (615)
T TIGR00990 411 IKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGSIASSMATFRRC 459 (615)
T ss_pred HcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 9999999999999999999999988888888888999999999988764
No 14
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=99.40 E-value=2.6e-12 Score=108.44 Aligned_cols=101 Identities=12% Similarity=0.071 Sum_probs=93.5
Q ss_pred cCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHHHcCCcHHHHHHHH
Q 026773 118 NNN-SREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSHFNRFEEGAEQFR 196 (233)
Q Consensus 118 ~l~-P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~lGryeeAi~~f~ 196 (233)
.++ ++.-+..+.+|..++..|++++|...|+-...+||.++ .+++ ++|.++..+|+|++|++.|.
T Consensus 28 ~~~~~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~-----~y~~---------gLG~~~Q~~g~~~~AI~aY~ 93 (157)
T PRK15363 28 DDDVTQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSF-----DYWF---------RLGECCQAQKHWGEAIYAYG 93 (157)
T ss_pred CCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccH-----HHHH---------HHHHHHHHHhhHHHHHHHHH
Confidence 577 88889999999999999999999999999999999998 5655 49999999999999999999
Q ss_pred HHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhh
Q 026773 197 IDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLEA 232 (233)
Q Consensus 197 kAL~lnP~d~e~~~~~~l~~a~Lg~~dEA~~~~l~~ 232 (233)
+|+.++|+||+++.+.+.|+..+|+.++|+..|..|
T Consensus 94 ~A~~L~~ddp~~~~~ag~c~L~lG~~~~A~~aF~~A 129 (157)
T PRK15363 94 RAAQIKIDAPQAPWAAAECYLACDNVCYAIKALKAV 129 (157)
T ss_pred HHHhcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 999999999999999999999999999999999865
No 15
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.39 E-value=4.9e-12 Score=127.28 Aligned_cols=121 Identities=10% Similarity=-0.019 Sum_probs=111.7
Q ss_pred hHHHhccCcchHHHHHHHHhcccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhh
Q 026773 96 PTFTRRLFIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGII 175 (233)
Q Consensus 96 ~~~~r~~~~~~a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~ 175 (233)
....+.+..++++..|..++ +++|++..|+.+++.++.+++++++|+..++++++.+|+++ ....
T Consensus 94 ~i~~~~g~~~ea~~~l~~~~--~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~-----~~~~-------- 158 (694)
T PRK15179 94 RALEAAHRSDEGLAVWRGIH--QRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSA-----REIL-------- 158 (694)
T ss_pred HHHHHcCCcHHHHHHHHHHH--hhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCH-----HHHH--------
Confidence 34455667888999999999 99999999999999999999999999999999999999998 4544
Q ss_pred hhhHHHHHHcCCcHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhh
Q 026773 176 LKKLIRVSHFNRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLEA 232 (233)
Q Consensus 176 ~~rG~al~~lGryeeAi~~f~kAL~lnP~d~e~~~~~~l~~a~Lg~~dEA~~~~l~~ 232 (233)
.+|.++..+|+|++|++.|+++++.+|++++.+++++.++...|+.++|...|.++
T Consensus 159 -~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a 214 (694)
T PRK15179 159 -LEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAG 214 (694)
T ss_pred -HHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 49999999999999999999999999999999999999999999999999999875
No 16
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.37 E-value=2.9e-12 Score=127.06 Aligned_cols=119 Identities=10% Similarity=0.025 Sum_probs=68.0
Q ss_pred hHHHhccCcchHHHHHHHHhcccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhh
Q 026773 96 PTFTRRLFIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGII 175 (233)
Q Consensus 96 ~~~~r~~~~~~a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~ 175 (233)
.+++..+-..+++.+|++++ .++|+++++.+++|.++..+|+.++|+..|.+|++..|+.+ +. .
T Consensus 328 nALkd~G~V~ea~~cYnkaL--~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~~a-----aa---------~ 391 (966)
T KOG4626|consen 328 NALKDKGSVTEAVDCYNKAL--RLCPNHADAMNNLGNIYREQGKIEEATRLYLKALEVFPEFA-----AA---------H 391 (966)
T ss_pred HHHHhccchHHHHHHHHHHH--HhCCccHHHHHHHHHHHHHhccchHHHHHHHHHHhhChhhh-----hh---------h
Confidence 44555554555666666666 66666666666666666666666666666666666666665 23 2
Q ss_pred hhhHHHHHHcCCcHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 026773 176 LKKLIRVSHFNRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFL 230 (233)
Q Consensus 176 ~~rG~al~~lGryeeAi~~f~kAL~lnP~d~e~~~~~~l~~a~Lg~~dEA~~~~l 230 (233)
+|+|.+|...|++++|+.+|..||+++|+.++++-++|..+..+|+.++|...+.
T Consensus 392 nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~~A~q~y~ 446 (966)
T KOG4626|consen 392 NNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVSAAIQCYT 446 (966)
T ss_pred hhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHHHHHHHHH
Confidence 3455555555555555555555555555555555555555555555555554443
No 17
>PLN02789 farnesyltranstransferase
Probab=99.36 E-value=8.2e-12 Score=115.14 Aligned_cols=150 Identities=10% Similarity=0.019 Sum_probs=104.0
Q ss_pred hhhccCCcchhhccccccccccccccccchhHH----HhccCcchHHHHHHHHhcccCCCCCHHHHHHHHHHHHHcC-CH
Q 026773 66 LLTSKAPLSVQTHINSLFSTPRGHYLQNRAPTF----TRRLFIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQG-DV 140 (233)
Q Consensus 66 ~~~~~~~~~~~~~~n~~~~~~~~h~~~~~~~~~----~r~~~~~~a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~lG-dy 140 (233)
-.-.+.|+.+....+|+........+.++...+ ......+.|..+++++| +++|++..+|..||.++..+| ++
T Consensus 11 ~~~d~~p~~~~~~~~~~~~i~y~~~~~~a~~~~ra~l~~~e~serAL~lt~~aI--~lnP~~ytaW~~R~~iL~~L~~~l 88 (320)
T PLN02789 11 EWADVTPIPQDDGPNPVVPIAYTPEFREAMDYFRAVYASDERSPRALDLTADVI--RLNPGNYTVWHFRRLCLEALDADL 88 (320)
T ss_pred CcCCccccCCCCCCCcccceeeCHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHH--HHCchhHHHHHHHHHHHHHcchhH
Confidence 345678888888778877766555555444322 22336678888899888 899999999999999999998 68
Q ss_pred HHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHHHcCCc--HHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Q 026773 141 VGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSHFNRF--EEGAEQFRIDVAQNPNDTEESIWCFLCEAQ 218 (233)
Q Consensus 141 eeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~lGry--eeAi~~f~kAL~lnP~d~e~~~~~~l~~a~ 218 (233)
++|++.++++|+.+|++. .. |. .||.++..+|+. +++++.+++++++||+|..+|..++.+...
T Consensus 89 ~eeL~~~~~~i~~npkny-----qa-W~--------~R~~~l~~l~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~ 154 (320)
T PLN02789 89 EEELDFAEDVAEDNPKNY-----QI-WH--------HRRWLAEKLGPDAANKELEFTRKILSLDAKNYHAWSHRQWVLRT 154 (320)
T ss_pred HHHHHHHHHHHHHCCcch-----HH-hH--------HHHHHHHHcCchhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Confidence 999999999999999987 33 33 366666666553 455666666666666666655555555556
Q ss_pred cCCHHHHHHHHHh
Q 026773 219 LYGVDEARNRFLE 231 (233)
Q Consensus 219 Lg~~dEA~~~~l~ 231 (233)
+|++++|++.+.+
T Consensus 155 l~~~~eeL~~~~~ 167 (320)
T PLN02789 155 LGGWEDELEYCHQ 167 (320)
T ss_pred hhhHHHHHHHHHH
Confidence 6666666555443
No 18
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.34 E-value=4.3e-11 Score=96.56 Aligned_cols=130 Identities=8% Similarity=0.046 Sum_probs=99.2
Q ss_pred hHHHhccCcchHHHHHHHHhcccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhh------
Q 026773 96 PTFTRRLFIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTI------ 169 (233)
Q Consensus 96 ~~~~r~~~~~~a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~------ 169 (233)
..+.+.+-...+...+..++ +.+|+++.++..+|.++..+|++++|++.|+++++++|++. ..++..
T Consensus 39 ~~~~~~~~~~~A~~~~~~~l--~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~-----~~~~~~~~~~~~ 111 (234)
T TIGR02521 39 LGYLEQGDLEVAKENLDKAL--EHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNG-----DVLNNYGTFLCQ 111 (234)
T ss_pred HHHHHCCCHHHHHHHHHHHH--HhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCH-----HHHHHHHHHHHH
Confidence 34444555566777777777 77888888888888888888888888888888888888765 222110
Q ss_pred ---------------------hhhhhhhhhHHHHHHcCCcHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 026773 170 ---------------------SIVGIILKKLIRVSHFNRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQLYGVDEARNR 228 (233)
Q Consensus 170 ---------------------~~~~a~~~rG~al~~lGryeeAi~~f~kAL~lnP~d~e~~~~~~l~~a~Lg~~dEA~~~ 228 (233)
....++.++|.++...|++++|++.|+++++.+|++++.+...+.+....|++++|...
T Consensus 112 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 191 (234)
T TIGR02521 112 QGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDARAY 191 (234)
T ss_pred cccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHHHHH
Confidence 01235667888899999999999999999999998888777778888888999999888
Q ss_pred HHhh
Q 026773 229 FLEA 232 (233)
Q Consensus 229 ~l~~ 232 (233)
+.++
T Consensus 192 ~~~~ 195 (234)
T TIGR02521 192 LERY 195 (234)
T ss_pred HHHH
Confidence 7764
No 19
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.34 E-value=1.3e-11 Score=128.25 Aligned_cols=114 Identities=12% Similarity=0.050 Sum_probs=104.9
Q ss_pred cCcchHHHHHHHHhcccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHH
Q 026773 102 LFIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIR 181 (233)
Q Consensus 102 ~~~~~a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~a 181 (233)
+-.++|...+.+++ +++|+ +.+|.++|.++.++|++++|++.|++|++++|+++ ..+. ++|.+
T Consensus 590 Gr~~eAl~~~~~AL--~l~P~-~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~-----~a~~---------nLG~a 652 (987)
T PRK09782 590 GQPELALNDLTRSL--NIAPS-ANAYVARATIYRQRHNVPAAVSDLRAALELEPNNS-----NYQA---------ALGYA 652 (987)
T ss_pred CCHHHHHHHHHHHH--HhCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH-----HHHH---------HHHHH
Confidence 56677888888888 89996 99999999999999999999999999999999998 4433 59999
Q ss_pred HHHcCCcHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhh
Q 026773 182 VSHFNRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLEA 232 (233)
Q Consensus 182 l~~lGryeeAi~~f~kAL~lnP~d~e~~~~~~l~~a~Lg~~dEA~~~~l~~ 232 (233)
+...|++++|++.|+++++++|++++.+.+++.++..+|++++|...+.++
T Consensus 653 L~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~A 703 (987)
T PRK09782 653 LWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLV 703 (987)
T ss_pred HHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999998875
No 20
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=99.32 E-value=2.5e-11 Score=94.59 Aligned_cols=102 Identities=9% Similarity=0.010 Sum_probs=87.8
Q ss_pred HHhccCcchHHHHHHHHhcccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhh
Q 026773 98 FTRRLFIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILK 177 (233)
Q Consensus 98 ~~r~~~~~~a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~ 177 (233)
+.+.+-..+|...+..++ +++|+++.+|..+|.++..+|++++|+..++++++++|+++ ..++.
T Consensus 27 ~~~~~~~~~A~~~~~~~~--~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~-----~~~~~--------- 90 (135)
T TIGR02552 27 LYQQGRYDEALKLFQLLA--AYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDP-----RPYFH--------- 90 (135)
T ss_pred HHHcccHHHHHHHHHHHH--HhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCh-----HHHHH---------
Confidence 334444567888999988 88999999999999999999999999999999999999988 44444
Q ss_pred hHHHHHHcCCcHHHHHHHHHHHHcCCCCHHHHHHHHHH
Q 026773 178 KLIRVSHFNRFEEGAEQFRIDVAQNPNDTEESIWCFLC 215 (233)
Q Consensus 178 rG~al~~lGryeeAi~~f~kAL~lnP~d~e~~~~~~l~ 215 (233)
+|.++...|++++|++.|+++++++|++.+...+...|
T Consensus 91 la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~ 128 (135)
T TIGR02552 91 AAECLLALGEPESALKALDLAIEICGENPEYSELKERA 128 (135)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHH
Confidence 99999999999999999999999999998755444333
No 21
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.31 E-value=7.5e-12 Score=123.76 Aligned_cols=165 Identities=14% Similarity=0.104 Sum_probs=132.8
Q ss_pred HhhhhhccCCCCCc--------hhhhHHhhhhccCCcchhhcccccccc---ccccccccchhHHHhccCcchHHHHHHH
Q 026773 45 ALTQHVLKPTINPP--------LYSFHRSLLTSKAPLSVQTHINSLFST---PRGHYLQNRAPTFTRRLFIPSVSGIWDA 113 (233)
Q Consensus 45 ~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~n~~~~~---~~~h~~~~~~~~~~r~~~~~~a~~i~~~ 113 (233)
+|.|-.++-.-|-| .||.-|--=+++--+-+++.+||.|+= +.+|.+ .-..-.+.|...|..
T Consensus 408 ~Laq~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~-------~~~ee~d~a~~~fr~ 480 (638)
T KOG1126|consen 408 YLAQDLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHES-------IATEEFDKAMKSFRK 480 (638)
T ss_pred HHHHHHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChh-------hhhHHHHhHHHHHHh
Confidence 34455554444444 466655555555667777888887763 555532 222234567888888
Q ss_pred HhcccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHHHcCCcHHHHH
Q 026773 114 LTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSHFNRFEEGAE 193 (233)
Q Consensus 114 ~i~~~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~lGryeeAi~ 193 (233)
++ ..+|++..||+.+|++|.++++++.|.-.|.||+++||.+. ...-. .|.++.++|+.++|+.
T Consensus 481 Al--~~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~ns-----vi~~~---------~g~~~~~~k~~d~AL~ 544 (638)
T KOG1126|consen 481 AL--GVDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNS-----VILCH---------IGRIQHQLKRKDKALQ 544 (638)
T ss_pred hh--cCCchhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccch-----hHHhh---------hhHHHHHhhhhhHHHH
Confidence 88 89999999999999999999999999999999999999998 33333 8999999999999999
Q ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhh
Q 026773 194 QFRIDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLEA 232 (233)
Q Consensus 194 ~f~kAL~lnP~d~e~~~~~~l~~a~Lg~~dEA~~~~l~~ 232 (233)
.|++|+.+||.|+-.-+.++..+..+++++||...++++
T Consensus 545 ~~~~A~~ld~kn~l~~~~~~~il~~~~~~~eal~~LEeL 583 (638)
T KOG1126|consen 545 LYEKAIHLDPKNPLCKYHRASILFSLGRYVEALQELEEL 583 (638)
T ss_pred HHHHHHhcCCCCchhHHHHHHHHHhhcchHHHHHHHHHH
Confidence 999999999999999899999999999999999999885
No 22
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.30 E-value=7.3e-12 Score=121.35 Aligned_cols=106 Identities=18% Similarity=0.189 Sum_probs=81.4
Q ss_pred HHHHHhcccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHHHcCCcH
Q 026773 110 IWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSHFNRFE 189 (233)
Q Consensus 110 i~~~~i~~~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~lGrye 189 (233)
.++.+. .+||+|+++|++||.+++.+++|++|++||+||++|||++.. .+- .++.++|+.++++
T Consensus 382 ~F~~A~--~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe~~~-----~~i---------Ql~~a~Yr~~k~~ 445 (606)
T KOG0547|consen 382 DFNKAE--DLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPENAY-----AYI---------QLCCALYRQHKIA 445 (606)
T ss_pred HHHHHH--hcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChhhhH-----HHH---------HHHHHHHHHHHHH
Confidence 344444 788888888888888888888888888888888888888772 222 4788888888888
Q ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHh
Q 026773 190 EGAEQFRIDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLE 231 (233)
Q Consensus 190 eAi~~f~kAL~lnP~d~e~~~~~~l~~a~Lg~~dEA~~~~l~ 231 (233)
+++.-|+.+++.=|+-+|.+..-+-++.-+++++.|...|..
T Consensus 446 ~~m~~Fee~kkkFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ 487 (606)
T KOG0547|consen 446 ESMKTFEEAKKKFPNCPEVYNLFAEILTDQQQFDKAVKQYDK 487 (606)
T ss_pred HHHHHHHHHHHhCCCCchHHHHHHHHHhhHHhHHHHHHHHHH
Confidence 888888888888888888777776777777788888877754
No 23
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.30 E-value=1e-10 Score=94.27 Aligned_cols=118 Identities=9% Similarity=0.031 Sum_probs=93.2
Q ss_pred hccCcchHHHHHHHHhcccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhH
Q 026773 100 RRLFIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKL 179 (233)
Q Consensus 100 r~~~~~~a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG 179 (233)
..+-..++...+..++.....|..+.++..+|.++...|++++|++.|+++++.+|+++ ..++ .+|
T Consensus 111 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-----~~~~---------~la 176 (234)
T TIGR02521 111 QQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRP-----ESLL---------ELA 176 (234)
T ss_pred HcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCh-----HHHH---------HHH
Confidence 33445566677777763223466778888889999999999999999999999988876 3333 499
Q ss_pred HHHHHcCCcHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHh
Q 026773 180 IRVSHFNRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLE 231 (233)
Q Consensus 180 ~al~~lGryeeAi~~f~kAL~lnP~d~e~~~~~~l~~a~Lg~~dEA~~~~l~ 231 (233)
.+++..|++++|++.+++++++.|++++.+.....+....|+.++|+.....
T Consensus 177 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 228 (234)
T TIGR02521 177 ELYYLRGQYKDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQ 228 (234)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 9999999999999999999999998887766566677788999999887554
No 24
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.28 E-value=6.4e-11 Score=117.74 Aligned_cols=109 Identities=12% Similarity=0.118 Sum_probs=59.5
Q ss_pred HHHHHHHHhcccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHHHcC
Q 026773 107 VSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSHFN 186 (233)
Q Consensus 107 a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~lG 186 (233)
|...+..++ +++|+++.++..+|.++..+|++++|+..++++++++|+++ .... ++|.++...|
T Consensus 269 A~~~~~~Al--~l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~-----~a~~---------~La~~l~~~G 332 (656)
T PRK15174 269 AAEHWRHAL--QFNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLP-----YVRA---------MYARALRQVG 332 (656)
T ss_pred HHHHHHHHH--hhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH-----HHHH---------HHHHHHHHCC
Confidence 444555555 55555555555555555555555555555555555555554 2211 3566666666
Q ss_pred CcHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHh
Q 026773 187 RFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLE 231 (233)
Q Consensus 187 ryeeAi~~f~kAL~lnP~d~e~~~~~~l~~a~Lg~~dEA~~~~l~ 231 (233)
++++|++.|+++++.+|+++......+.++..+|+.++|...|.+
T Consensus 333 ~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~ 377 (656)
T PRK15174 333 QYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEH 377 (656)
T ss_pred CHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 666666666666666665554333344555556666666655544
No 25
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.27 E-value=1.3e-11 Score=122.10 Aligned_cols=111 Identities=20% Similarity=0.120 Sum_probs=98.1
Q ss_pred cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhh------------------------hhhh
Q 026773 118 NNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTI------------------------SIVG 173 (233)
Q Consensus 118 ~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~------------------------~~~~ 173 (233)
.-+|+.|++|...|+++..|+|++.||+.|+|||++||++.. +|.... +=++
T Consensus 415 ~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faY----ayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhYn 490 (638)
T KOG1126|consen 415 DTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAY----AYTLLGHESIATEEFDKAMKSFRKALGVDPRHYN 490 (638)
T ss_pred hhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccch----hhhhcCChhhhhHHHHhHHHHHHhhhcCCchhhH
Confidence 789999999999999999999999999999999999999883 222110 2289
Q ss_pred hhhhhHHHHHHcCCcHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhh
Q 026773 174 IILKKLIRVSHFNRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLEA 232 (233)
Q Consensus 174 a~~~rG~al~~lGryeeAi~~f~kAL~lnP~d~e~~~~~~l~~a~Lg~~dEA~~~~l~~ 232 (233)
||+.+|.+|.+++++|.|.-.|.+|+++||.+....-..+..+.++|+.|+|++.+.++
T Consensus 491 AwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A 549 (638)
T KOG1126|consen 491 AWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKA 549 (638)
T ss_pred HHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHH
Confidence 99999999999999999999999999999999876666777888999999999999875
No 26
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=99.26 E-value=5.3e-11 Score=80.96 Aligned_cols=93 Identities=20% Similarity=0.327 Sum_probs=79.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHHHcCCcHHHHHHHHHHHHcCCCC
Q 026773 126 VAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSHFNRFEEGAEQFRIDVAQNPND 205 (233)
Q Consensus 126 Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~lGryeeAi~~f~kAL~lnP~d 205 (233)
+++.+|.++...|++++|+..++++++++|++. ..+. .+|.++...|++++|++.|++++++.|.+
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~-----~~~~---------~~~~~~~~~~~~~~a~~~~~~~~~~~~~~ 67 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNA-----DAYY---------NLAAAYYKLGKYEEALEDYEKALELDPDN 67 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccH-----HHHH---------HHHHHHHHHHHHHHHHHHHHHHHhCCCcc
Confidence 578899999999999999999999999999876 2333 48999999999999999999999999998
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHhh
Q 026773 206 TEESIWCFLCEAQLYGVDEARNRFLEA 232 (233)
Q Consensus 206 ~e~~~~~~l~~a~Lg~~dEA~~~~l~~ 232 (233)
.+.+...+.+....|++++|...+.++
T Consensus 68 ~~~~~~~~~~~~~~~~~~~a~~~~~~~ 94 (100)
T cd00189 68 AKAYYNLGLAYYKLGKYEEALEAYEKA 94 (100)
T ss_pred hhHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 877777778888889999998888764
No 27
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.26 E-value=3.2e-11 Score=119.83 Aligned_cols=110 Identities=15% Similarity=0.043 Sum_probs=72.5
Q ss_pred HHHHHHHHhcccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHHHcC
Q 026773 107 VSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSHFN 186 (233)
Q Consensus 107 a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~lG 186 (233)
|...|.+++ +++|+.++||.++|+++-..|+..||+++|++|++++|+++ ++.+|+|.++.++|
T Consensus 305 AI~~Ykral--~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~ha--------------dam~NLgni~~E~~ 368 (966)
T KOG4626|consen 305 AIDTYKRAL--ELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHA--------------DAMNNLGNIYREQG 368 (966)
T ss_pred HHHHHHHHH--hcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccH--------------HHHHHHHHHHHHhc
Confidence 344444444 55555555555555555555555555555555555555555 23445777888888
Q ss_pred CcHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhh
Q 026773 187 RFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLEA 232 (233)
Q Consensus 187 ryeeAi~~f~kAL~lnP~d~e~~~~~~l~~a~Lg~~dEA~~~~l~~ 232 (233)
.+++|...|.++++..|+.+++.-+++..+-++|++++|+..+.++
T Consensus 369 ~~e~A~~ly~~al~v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykea 414 (966)
T KOG4626|consen 369 KIEEATRLYLKALEVFPEFAAAHNNLASIYKQQGNLDDAIMCYKEA 414 (966)
T ss_pred cchHHHHHHHHHHhhChhhhhhhhhHHHHHHhcccHHHHHHHHHHH
Confidence 8888888888888888777777777777777777788877777664
No 28
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.26 E-value=3.3e-11 Score=110.64 Aligned_cols=95 Identities=21% Similarity=0.298 Sum_probs=87.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHHHcCCcHHHHHHHHHHHHcCC
Q 026773 124 AVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSHFNRFEEGAEQFRIDVAQNP 203 (233)
Q Consensus 124 a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~lGryeeAi~~f~kAL~lnP 203 (233)
++-.-.-|.-+...++|++||..|++||+++|+++ -| +. ||+.+|..+|.|+.||+|.+.||++||
T Consensus 81 AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nA-----Vy-yc--------NRAAAy~~Lg~~~~AVkDce~Al~iDp 146 (304)
T KOG0553|consen 81 AESLKNEGNKLMKNKDYQEAVDKYTEAIELDPTNA-----VY-YC--------NRAAAYSKLGEYEDAVKDCESALSIDP 146 (304)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcc-----hH-HH--------HHHHHHHHhcchHHHHHHHHHHHhcCh
Confidence 67788999999999999999999999999999999 34 44 699999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHhh
Q 026773 204 NDTEESIWCFLCEAQLYGVDEARNRFLEA 232 (233)
Q Consensus 204 ~d~e~~~~~~l~~a~Lg~~dEA~~~~l~~ 232 (233)
....+|.-+++++..+|++++|.+.|.++
T Consensus 147 ~yskay~RLG~A~~~~gk~~~A~~aykKa 175 (304)
T KOG0553|consen 147 HYSKAYGRLGLAYLALGKYEEAIEAYKKA 175 (304)
T ss_pred HHHHHHHHHHHHHHccCcHHHHHHHHHhh
Confidence 99998888899999999999999998764
No 29
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.26 E-value=2.6e-11 Score=117.61 Aligned_cols=111 Identities=17% Similarity=0.200 Sum_probs=103.1
Q ss_pred hHHHHHHHHhcccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHHHc
Q 026773 106 SVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSHF 185 (233)
Q Consensus 106 ~a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~l 185 (233)
.+-..++++| +++|.+...|+.||.++....+-++...+|++|..+||+++ ..+++ ||.+++-+
T Consensus 344 ~a~~d~~~~I--~l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~-----dvYyH---------RgQm~flL 407 (606)
T KOG0547|consen 344 GAQEDFDAAI--KLDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENP-----DVYYH---------RGQMRFLL 407 (606)
T ss_pred hhhhhHHHHH--hcCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCC-----chhHh---------HHHHHHHH
Confidence 4567888899 99999999999999999999999999999999999999999 56666 99999999
Q ss_pred CCcHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhh
Q 026773 186 NRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLEA 232 (233)
Q Consensus 186 GryeeAi~~f~kAL~lnP~d~e~~~~~~l~~a~Lg~~dEA~~~~l~~ 232 (233)
++|++|+++|+++++++|++.-+++....++.++++++++...|.++
T Consensus 408 ~q~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~ 454 (606)
T KOG0547|consen 408 QQYEEAIADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEA 454 (606)
T ss_pred HHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999888888999999999999875
No 30
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.25 E-value=1.3e-10 Score=115.61 Aligned_cols=121 Identities=9% Similarity=0.034 Sum_probs=109.1
Q ss_pred hHHHhccCcchHHHHHHHHhcccCCCCCHHHHHHHHHHHHHcCCHHH----HHHHHHHHHhhCCCCCCCccchhhhhhhh
Q 026773 96 PTFTRRLFIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVG----SVAEFDKAIELDPRQKISGKGAYRFTISI 171 (233)
Q Consensus 96 ~~~~r~~~~~~a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~lGdyee----AIadfdkAIeLdP~~~~~~~~~y~~~~~~ 171 (233)
..+.+.+-..+|...++.++ +++|+++.++..+|.++..+|++++ |++.|++|++++|+++ ..+.
T Consensus 220 ~~l~~~g~~~eA~~~~~~al--~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~-----~a~~---- 288 (656)
T PRK15174 220 DTLCAVGKYQEAIQTGESAL--ARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDNV-----RIVT---- 288 (656)
T ss_pred HHHHHCCCHHHHHHHHHHHH--hcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCH-----HHHH----
Confidence 44556666678999999999 8999999999999999999999996 8999999999999987 3433
Q ss_pred hhhhhhhHHHHHHcCCcHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhh
Q 026773 172 VGIILKKLIRVSHFNRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLEA 232 (233)
Q Consensus 172 ~~a~~~rG~al~~lGryeeAi~~f~kAL~lnP~d~e~~~~~~l~~a~Lg~~dEA~~~~l~~ 232 (233)
++|.++...|++++|+..++++++++|++++.+.+++.++.++|++++|...+.++
T Consensus 289 -----~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~a 344 (656)
T PRK15174 289 -----LYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQL 344 (656)
T ss_pred -----HHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 59999999999999999999999999999999899999999999999999988764
No 31
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.24 E-value=1.6e-10 Score=110.50 Aligned_cols=129 Identities=12% Similarity=0.063 Sum_probs=91.1
Q ss_pred HHHhccCcchHHHHHHHHhcccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhh-------
Q 026773 97 TFTRRLFIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTI------- 169 (233)
Q Consensus 97 ~~~r~~~~~~a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~------- 169 (233)
.+.+.+-..++...+..++ +.+|+++.+++.+|.++..+|++++|++.|+++++.+|+++ ..+...
T Consensus 745 ~~~~~g~~~~A~~~~~~~l--~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~-----~~~~~l~~~~~~~ 817 (899)
T TIGR02917 745 ALLASGNTAEAVKTLEAWL--KTHPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNA-----VVLNNLAWLYLEL 817 (899)
T ss_pred HHHHCCCHHHHHHHHHHHH--HhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHHhc
Confidence 3444444555556666655 55666666666666666666666666666666666666554 111100
Q ss_pred -----------------hhhhhhhhhHHHHHHcCCcHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhh
Q 026773 170 -----------------SIVGIILKKLIRVSHFNRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLEA 232 (233)
Q Consensus 170 -----------------~~~~a~~~rG~al~~lGryeeAi~~f~kAL~lnP~d~e~~~~~~l~~a~Lg~~dEA~~~~l~~ 232 (233)
....++..+|.++...|++++|++.|+++++++|++++.+...+.++.+.|+.++|+..+.++
T Consensus 818 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 897 (899)
T TIGR02917 818 KDPRALEYAEKALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPEAAAIRYHLALALLATGRKAEARKELDKL 897 (899)
T ss_pred CcHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 002234468999999999999999999999999999998888999999999999999999876
No 32
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=99.23 E-value=8e-11 Score=109.29 Aligned_cols=92 Identities=14% Similarity=0.147 Sum_probs=85.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHHHcCCcHHHHHHHHHHHHcCCCCH
Q 026773 127 AIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSHFNRFEEGAEQFRIDVAQNPNDT 206 (233)
Q Consensus 127 y~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~lGryeeAi~~f~kAL~lnP~d~ 206 (233)
+...|...+..|+|++|++.|++||+++|+++ .++. ++|.++..+|++++|+.+++++++++|+++
T Consensus 5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~-----~a~~---------~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~ 70 (356)
T PLN03088 5 LEDKAKEAFVDDDFALAVDLYTQAIDLDPNNA-----ELYA---------DRAQANIKLGNFTEAVADANKAIELDPSLA 70 (356)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-----HHHH---------HHHHHHHHcCCHHHHHHHHHHHHHhCcCCH
Confidence 56789999999999999999999999999988 4433 599999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHhh
Q 026773 207 EESIWCFLCEAQLYGVDEARNRFLEA 232 (233)
Q Consensus 207 e~~~~~~l~~a~Lg~~dEA~~~~l~~ 232 (233)
..++.++.++..+|++++|...|.++
T Consensus 71 ~a~~~lg~~~~~lg~~~eA~~~~~~a 96 (356)
T PLN03088 71 KAYLRKGTACMKLEEYQTAKAALEKG 96 (356)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 99999999999999999999998764
No 33
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.23 E-value=1.6e-11 Score=120.10 Aligned_cols=112 Identities=17% Similarity=0.179 Sum_probs=102.2
Q ss_pred chHHHHHHHHhcccCCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHH
Q 026773 105 PSVSGIWDALTGGNNNS--REAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRV 182 (233)
Q Consensus 105 ~~a~~i~~~~i~~~l~P--~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al 182 (233)
.....+|-++. ..+| .+++++..+|.++...|+|++||.+|+.||+.+|++. ..|+ .+|.++
T Consensus 411 ~~i~~~fLeaa--~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd~------~lWN--------RLGAtL 474 (579)
T KOG1125|consen 411 AHIQELFLEAA--RQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPNDY------LLWN--------RLGATL 474 (579)
T ss_pred HHHHHHHHHHH--HhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHhcCCchH------HHHH--------HhhHHh
Confidence 34556666665 5677 8999999999999999999999999999999999998 5565 799999
Q ss_pred HHcCCcHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhh
Q 026773 183 SHFNRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLEA 232 (233)
Q Consensus 183 ~~lGryeeAi~~f~kAL~lnP~d~e~~~~~~l~~a~Lg~~dEA~~~~l~~ 232 (233)
..-.+.+|||+.|++|+++.|+.....++++.+...+|.++||...|++|
T Consensus 475 AN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~A 524 (579)
T KOG1125|consen 475 ANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEA 524 (579)
T ss_pred cCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999986
No 34
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=99.21 E-value=3.5e-10 Score=93.58 Aligned_cols=108 Identities=17% Similarity=0.183 Sum_probs=86.8
Q ss_pred CcchHHHHHHHHh----cccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhh
Q 026773 103 FIPSVSGIWDALT----GGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKK 178 (233)
Q Consensus 103 ~~~~a~~i~~~~i----~~~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~r 178 (233)
++...-.+|..++ .+..+|..+.+++.+|.++...|++++|+..|++|++++|+.. .. ..++.++
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~-----~~------~~~~~~l 78 (172)
T PRK02603 10 FIDKSFTVMADLILKILPINKKAKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPN-----DR------SYILYNM 78 (172)
T ss_pred hHhHHHHHHHHHHHHHcccccHhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccc-----hH------HHHHHHH
Confidence 3444444454443 2345668889999999999999999999999999999988754 11 1134579
Q ss_pred HHHHHHcCCcHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCC
Q 026773 179 LIRVSHFNRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQLYG 221 (233)
Q Consensus 179 G~al~~lGryeeAi~~f~kAL~lnP~d~e~~~~~~l~~a~Lg~ 221 (233)
|.++..+|++++|++.++++++++|+++..+...+.++..+|+
T Consensus 79 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~ 121 (172)
T PRK02603 79 GIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVIYHKRGE 121 (172)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCC
Confidence 9999999999999999999999999999988888888887776
No 35
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.21 E-value=2.5e-10 Score=119.55 Aligned_cols=129 Identities=13% Similarity=0.076 Sum_probs=105.9
Q ss_pred HHhccCcchHHHHHHHHhcccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhh----hhhh
Q 026773 98 FTRRLFIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTI----SIVG 173 (233)
Q Consensus 98 ~~r~~~~~~a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~----~~~~ 173 (233)
+.+.+-..+|...+.+++ +++|++++++..+|.++.++|++++|++.|++|++++|++.. ...|.. .-..
T Consensus 279 ~~~~g~~~~A~~~l~~aL--~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~----~~~~~~ll~~~~~~ 352 (1157)
T PRK11447 279 AVDSGQGGKAIPELQQAV--RANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSN----RDKWESLLKVNRYW 352 (1157)
T ss_pred HHHCCCHHHHHHHHHHHH--HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccc----hhHHHHHHHhhhHH
Confidence 334455678889999999 899999999999999999999999999999999999998762 111210 0011
Q ss_pred hhhhhHHHHHHcCCcHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhh
Q 026773 174 IILKKLIRVSHFNRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLEA 232 (233)
Q Consensus 174 a~~~rG~al~~lGryeeAi~~f~kAL~lnP~d~e~~~~~~l~~a~Lg~~dEA~~~~l~~ 232 (233)
....+|.++...|++++|++.|+++++++|++++.+..++.++..+|++++|+..|.++
T Consensus 353 ~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~a 411 (1157)
T PRK11447 353 LLIQQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQA 411 (1157)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 23457888999999999999999999999999988888888888999999999988764
No 36
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=99.20 E-value=3.3e-11 Score=84.21 Aligned_cols=65 Identities=18% Similarity=0.342 Sum_probs=57.9
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHHHcCCcHHHHHHHHHHHHcCCCCH
Q 026773 128 IRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSHFNRFEEGAEQFRIDVAQNPNDT 206 (233)
Q Consensus 128 ~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~lGryeeAi~~f~kAL~lnP~d~ 206 (233)
+.+|.+++..|++++|++.|+++++.+|+++ ..++ .+|.+++.+|++++|++.|+++++++|++|
T Consensus 1 ~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~-----~a~~---------~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 1 YALARALYQQGDYDEAIAAFEQALKQDPDNP-----EAWY---------LLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHHHCTHHHHHHHHHHHHHCCSTTHH-----HHHH---------HHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred ChHHHHHHHcCCHHHHHHHHHHHHHHCCCCH-----HHHH---------HHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 4689999999999999999999999999988 4444 499999999999999999999999999986
No 37
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=99.20 E-value=1.7e-10 Score=97.47 Aligned_cols=96 Identities=8% Similarity=-0.014 Sum_probs=84.5
Q ss_pred HHHhccCcchHHHHHHHHhcccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhh
Q 026773 97 TFTRRLFIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIIL 176 (233)
Q Consensus 97 ~~~r~~~~~~a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~ 176 (233)
.+-..+-..+|+.+|..++ .+||.+++.|+++|.++-.+|+|++||+.|.+|+.++|+++ ..+++
T Consensus 44 ~ly~~G~l~~A~~~f~~L~--~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp-----~~~~~-------- 108 (157)
T PRK15363 44 QLMEVKEFAGAARLFQLLT--IYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAP-----QAPWA-------- 108 (157)
T ss_pred HHHHCCCHHHHHHHHHHHH--HhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCc-----hHHHH--------
Confidence 3444556678999999998 89999999999999999999999999999999999999999 44444
Q ss_pred hhHHHHHHcCCcHHHHHHHHHHHHcCCCCHHH
Q 026773 177 KKLIRVSHFNRFEEGAEQFRIDVAQNPNDTEE 208 (233)
Q Consensus 177 ~rG~al~~lGryeeAi~~f~kAL~lnP~d~e~ 208 (233)
.|.++..+|+.++|.+.|+.+++.--.+++.
T Consensus 109 -ag~c~L~lG~~~~A~~aF~~Ai~~~~~~~~~ 139 (157)
T PRK15363 109 -AAECYLACDNVCYAIKALKAVVRICGEVSEH 139 (157)
T ss_pred -HHHHHHHcCCHHHHHHHHHHHHHHhccChhH
Confidence 8999999999999999999999987555543
No 38
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=99.19 E-value=5e-10 Score=84.00 Aligned_cols=97 Identities=11% Similarity=0.147 Sum_probs=60.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHHHcCCcHHHHHHHHHHHHcCC
Q 026773 124 AVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSHFNRFEEGAEQFRIDVAQNP 203 (233)
Q Consensus 124 a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~lGryeeAi~~f~kAL~lnP 203 (233)
+++++.+|..+..+|++++|++.|+++++.+|+++. . ..+.+.+|.+++..|++++|++.|++++..+|
T Consensus 2 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-----~------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p 70 (119)
T TIGR02795 2 EEAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTY-----A------PNAHYWLGEAYYAQGKYADAAKAFLAVVKKYP 70 (119)
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccc-----c------HHHHHHHHHHHHhhccHHHHHHHHHHHHHHCC
Confidence 456667777777777777777777777777665531 0 01223467777777777777777777777666
Q ss_pred CC---HHHHHHHHHHHHHcCCHHHHHHHHHh
Q 026773 204 ND---TEESIWCFLCEAQLYGVDEARNRFLE 231 (233)
Q Consensus 204 ~d---~e~~~~~~l~~a~Lg~~dEA~~~~l~ 231 (233)
++ ++.+...+.++.++|+.++|...+.+
T Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~ 101 (119)
T TIGR02795 71 KSPKAPDALLKLGMSLQELGDKEKAKATLQQ 101 (119)
T ss_pred CCCcccHHHHHHHHHHHHhCChHHHHHHHHH
Confidence 64 33445555666666777777666654
No 39
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.16 E-value=6.9e-10 Score=106.20 Aligned_cols=116 Identities=12% Similarity=0.043 Sum_probs=84.3
Q ss_pred hccCcchHHHHHHHHhcccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhH
Q 026773 100 RRLFIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKL 179 (233)
Q Consensus 100 r~~~~~~a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG 179 (233)
+.+-...|...+..++ +.+|+++.++..+|.++...|++++|++.++++++.+|++. ..+. .+|
T Consensus 137 ~~~~~~~A~~~~~~a~--~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~-----~~~~---------~~~ 200 (899)
T TIGR02917 137 GLGQLELAQKSYEQAL--AIDPRSLYAKLGLAQLALAENRFDEARALIDEVLTADPGNV-----DALL---------LKG 200 (899)
T ss_pred HcCCHHHHHHHHHHHH--hcCCCChhhHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCh-----HHHH---------HHH
Confidence 3344456777777777 77788888888888888888888888888888888887766 3333 367
Q ss_pred HHHHHcCCcHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHh
Q 026773 180 IRVSHFNRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLE 231 (233)
Q Consensus 180 ~al~~lGryeeAi~~f~kAL~lnP~d~e~~~~~~l~~a~Lg~~dEA~~~~l~ 231 (233)
.++...|++++|++.|+++++++|+++..+...+.++...|++++|...+.+
T Consensus 201 ~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~ 252 (899)
T TIGR02917 201 DLLLSLGNIELALAAYRKAIALRPNNPAVLLALATILIEAGEFEEAEKHADA 252 (899)
T ss_pred HHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 7777777777777777777777777777666666677777777777766654
No 40
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.16 E-value=6.1e-10 Score=116.66 Aligned_cols=126 Identities=10% Similarity=0.090 Sum_probs=105.8
Q ss_pred hccCcchHHHHHHHHhcccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhh-h--------
Q 026773 100 RRLFIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTI-S-------- 170 (233)
Q Consensus 100 r~~~~~~a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~-~-------- 170 (233)
+.+-..+|...+.+++ +++|+++.++..+|.++..+|++++|++.|++|++++|++. ..+... .
T Consensus 363 ~~g~~~eA~~~~~~Al--~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~-----~a~~~L~~l~~~~~~~ 435 (1157)
T PRK11447 363 KANNLAQAERLYQQAR--QVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNT-----NAVRGLANLYRQQSPE 435 (1157)
T ss_pred HCCCHHHHHHHHHHHH--HhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHHhcCHH
Confidence 4445566777888888 89999999999999999999999999999999999999987 222110 0
Q ss_pred ------------------------hhhhhhhhHHHHHHcCCcHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHH
Q 026773 171 ------------------------IVGIILKKLIRVSHFNRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQLYGVDEAR 226 (233)
Q Consensus 171 ------------------------~~~a~~~rG~al~~lGryeeAi~~f~kAL~lnP~d~e~~~~~~l~~a~Lg~~dEA~ 226 (233)
..+++..+|.++...|++++|++.|+++++++|++++.++.++.++.++|++++|.
T Consensus 436 ~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~~G~~~~A~ 515 (1157)
T PRK11447 436 KALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQAGQRSQAD 515 (1157)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 02345567888899999999999999999999999998888889999999999999
Q ss_pred HHHHhh
Q 026773 227 NRFLEA 232 (233)
Q Consensus 227 ~~~l~~ 232 (233)
..+.++
T Consensus 516 ~~l~~a 521 (1157)
T PRK11447 516 ALMRRL 521 (1157)
T ss_pred HHHHHH
Confidence 988764
No 41
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=99.15 E-value=2.1e-10 Score=102.81 Aligned_cols=117 Identities=21% Similarity=0.297 Sum_probs=100.3
Q ss_pred hccCcchHHHHHHHHh-----cccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhh
Q 026773 100 RRLFIPSVSGIWDALT-----GGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGI 174 (233)
Q Consensus 100 r~~~~~~a~~i~~~~i-----~~~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a 174 (233)
.|++..+..|+|.-+. +++++|+.|++++.+|..+...|+|+.|.+.||..+++||.+. |.
T Consensus 70 ERGvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~------Ya-------- 135 (297)
T COG4785 70 ERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYN------YA-------- 135 (297)
T ss_pred HhcchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcch------HH--------
Confidence 3455555677776652 3489999999999999999999999999999999999999887 43
Q ss_pred hhhhHHHHHHcCCcHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHh
Q 026773 175 ILKKLIRVSHFNRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLE 231 (233)
Q Consensus 175 ~~~rG~al~~lGryeeAi~~f~kAL~lnP~d~e~~~~~~l~~a~Lg~~dEA~~~~l~ 231 (233)
.+|||+++|.-|||+-|.++|.+--+.||+||-..+|+.+.+.++. +.+|+..+.+
T Consensus 136 ~lNRgi~~YY~gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl~E~k~d-P~~A~tnL~q 191 (297)
T COG4785 136 HLNRGIALYYGGRYKLAQDDLLAFYQDDPNDPFRSLWLYLNEQKLD-PKQAKTNLKQ 191 (297)
T ss_pred HhccceeeeecCchHhhHHHHHHHHhcCCCChHHHHHHHHHHhhCC-HHHHHHHHHH
Confidence 2479999999999999999999999999999999999998888765 8888776654
No 42
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.15 E-value=8.9e-10 Score=93.78 Aligned_cols=124 Identities=15% Similarity=0.106 Sum_probs=99.4
Q ss_pred hHHHhccCcchHHHHHHHHhcccCCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhh
Q 026773 96 PTFTRRLFIPSVSGIWDALTGGNNNSREA---VVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIV 172 (233)
Q Consensus 96 ~~~~r~~~~~~a~~i~~~~i~~~l~P~~a---~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~ 172 (233)
..+-+.+-...|...+..++ +.+|+++ .+++.+|.+++.+|++++|++.|+++++.+|+++ ...
T Consensus 41 ~~~~~~~~~~~A~~~~~~~~--~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~-----~~~------ 107 (235)
T TIGR03302 41 KEALDSGDYTEAIKYFEALE--SRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHP-----DAD------ 107 (235)
T ss_pred HHHHHcCCHHHHHHHHHHHH--HhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCC-----chH------
Confidence 44445555677888999998 8888876 6889999999999999999999999999999988 210
Q ss_pred hhhhhhHHHHHHc--------CCcHHHHHHHHHHHHcCCCCHHHH-----------------HHHHHHHHHcCCHHHHHH
Q 026773 173 GIILKKLIRVSHF--------NRFEEGAEQFRIDVAQNPNDTEES-----------------IWCFLCEAQLYGVDEARN 227 (233)
Q Consensus 173 ~a~~~rG~al~~l--------GryeeAi~~f~kAL~lnP~d~e~~-----------------~~~~l~~a~Lg~~dEA~~ 227 (233)
.+++.+|.+++.. |++++|++.|+++++.+|++.... ...+.+....|++++|..
T Consensus 108 ~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~ 187 (235)
T TIGR03302 108 YAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAIN 187 (235)
T ss_pred HHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHH
Confidence 1234589999887 899999999999999999986442 123445567899999998
Q ss_pred HHHhh
Q 026773 228 RFLEA 232 (233)
Q Consensus 228 ~~l~~ 232 (233)
.+.++
T Consensus 188 ~~~~a 192 (235)
T TIGR03302 188 RFETV 192 (235)
T ss_pred HHHHH
Confidence 88764
No 43
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.13 E-value=6e-10 Score=99.71 Aligned_cols=115 Identities=15% Similarity=0.115 Sum_probs=88.1
Q ss_pred hccCcchHHHHHHHHhcccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhH
Q 026773 100 RRLFIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKL 179 (233)
Q Consensus 100 r~~~~~~a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG 179 (233)
+++-...|..-.++++ +.||++..+|..|+.++..+|+.+-|-+.|++|+.++|++. .. .||-|
T Consensus 47 ~~gd~~~A~~nlekAL--~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~G-----dV---------LNNYG 110 (250)
T COG3063 47 QQGDYAQAKKNLEKAL--EHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNG-----DV---------LNNYG 110 (250)
T ss_pred HCCCHHHHHHHHHHHH--HhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCcc-----ch---------hhhhh
Confidence 3444455777777777 89999999999999999999999999999999999999988 33 33577
Q ss_pred HHHHHcCCcHHHHHHHHHHHHcCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHh
Q 026773 180 IRVSHFNRFEEGAEQFRIDVAQNPND---TEESIWCFLCEAQLYGVDEARNRFLE 231 (233)
Q Consensus 180 ~al~~lGryeeAi~~f~kAL~lnP~d---~e~~~~~~l~~a~Lg~~dEA~~~~l~ 231 (233)
.=++..|+|++|...|++|+. +|.. +..+-+.+.|-.+.|+.+.|+..|..
T Consensus 111 ~FLC~qg~~~eA~q~F~~Al~-~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~r 164 (250)
T COG3063 111 AFLCAQGRPEEAMQQFERALA-DPAYGEPSDTLENLGLCALKAGQFDQAEEYLKR 164 (250)
T ss_pred HHHHhCCChHHHHHHHHHHHh-CCCCCCcchhhhhhHHHHhhcCCchhHHHHHHH
Confidence 777777788888888877776 5543 33456667777777777777777654
No 44
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.13 E-value=4.4e-10 Score=117.04 Aligned_cols=118 Identities=12% Similarity=0.086 Sum_probs=100.1
Q ss_pred hHHHhccCcchHHHHHHHHhcccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhh
Q 026773 96 PTFTRRLFIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGII 175 (233)
Q Consensus 96 ~~~~r~~~~~~a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~ 175 (233)
..+.+.+-..+|...+..++ +++|+++.++.++|.++..+|++++|++.|++|++++|+++ ..+++
T Consensus 617 ~~l~~lG~~deA~~~l~~AL--~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~-----~a~~n------- 682 (987)
T PRK09782 617 TIYRQRHNVPAAVSDLRAAL--ELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDP-----ALIRQ------- 682 (987)
T ss_pred HHHHHCCCHHHHHHHHHHHH--HhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH-----HHHHH-------
Confidence 44555556667777888888 89999999999999999999999999999999999999998 45554
Q ss_pred hhhHHHHHHcCCcHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 026773 176 LKKLIRVSHFNRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQLYGVDEARNRF 229 (233)
Q Consensus 176 ~~rG~al~~lGryeeAi~~f~kAL~lnP~d~e~~~~~~l~~a~Lg~~dEA~~~~ 229 (233)
+|.++..+|++++|++.|+++++++|+++....-.+-.+...++++.|.+.+
T Consensus 683 --LA~al~~lGd~~eA~~~l~~Al~l~P~~a~i~~~~g~~~~~~~~~~~a~~~~ 734 (987)
T PRK09782 683 --LAYVNQRLDDMAATQHYARLVIDDIDNQALITPLTPEQNQQRFNFRRLHEEV 734 (987)
T ss_pred --HHHHHHHCCCHHHHHHHHHHHHhcCCCCchhhhhhhHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999877665665666666677776654
No 45
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=99.12 E-value=1.6e-09 Score=89.00 Aligned_cols=109 Identities=15% Similarity=0.081 Sum_probs=87.6
Q ss_pred HHHHHhcccCCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHHHcCC
Q 026773 110 IWDALTGGNNNSR--EAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSHFNR 187 (233)
Q Consensus 110 i~~~~i~~~l~P~--~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~lGr 187 (233)
....++ +.++. .+.+|+..|.++..+|++++|+..|++|+++.|+.. .. ..++.++|.++...|+
T Consensus 21 ~l~~~~--~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~-----~~------~~~~~~lg~~~~~~g~ 87 (168)
T CHL00033 21 ILLRIL--PTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPY-----DR------SYILYNIGLIHTSNGE 87 (168)
T ss_pred hhhHhc--cCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccch-----hh------HHHHHHHHHHHHHcCC
Confidence 334444 34444 478889999999999999999999999999987643 11 1234579999999999
Q ss_pred cHHHHHHHHHHHHcCCCCHHHHHHHHHHHH-------HcCCHHHHHHHHHh
Q 026773 188 FEEGAEQFRIDVAQNPNDTEESIWCFLCEA-------QLYGVDEARNRFLE 231 (233)
Q Consensus 188 yeeAi~~f~kAL~lnP~d~e~~~~~~l~~a-------~Lg~~dEA~~~~l~ 231 (233)
+++|++.|+++++++|...+.+..++.++. .+|++++|...+.+
T Consensus 88 ~~eA~~~~~~Al~~~~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~ 138 (168)
T CHL00033 88 HTKALEYYFQALERNPFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQ 138 (168)
T ss_pred HHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHH
Confidence 999999999999999999988877777777 77888877766654
No 46
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.12 E-value=1.9e-10 Score=101.13 Aligned_cols=138 Identities=18% Similarity=0.117 Sum_probs=85.6
Q ss_pred chhHHHhccCcchHHHHHHHHhcccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhh-h---
Q 026773 94 RAPTFTRRLFIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFT-I--- 169 (233)
Q Consensus 94 ~~~~~~r~~~~~~a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~-~--- 169 (233)
.+..+.+.+-++.+......+....-.|+++..|..+|.++.+.|+.++|+++|++|++++|+++. ....+.|. +
T Consensus 116 ~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~-~~~~l~~~li~~~ 194 (280)
T PF13429_consen 116 ALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALELDPDDPD-ARNALAWLLIDMG 194 (280)
T ss_dssp --H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HH-HHHHHHHHHCTTC
T ss_pred HHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHH-HHHHHHHHHHHCC
Confidence 444455666677777787776632233688999999999999999999999999999999998772 00001111 0
Q ss_pred --------------hh---hhhhhhhHHHHHHcCCcHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhh
Q 026773 170 --------------SI---VGIILKKLIRVSHFNRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLEA 232 (233)
Q Consensus 170 --------------~~---~~a~~~rG~al~~lGryeeAi~~f~kAL~lnP~d~e~~~~~~l~~a~Lg~~dEA~~~~l~~ 232 (233)
.. ...+...|.++..+|++++|+..|+++++.+|+|+......+-++.+.|+.++|.....++
T Consensus 195 ~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~ 274 (280)
T PF13429_consen 195 DYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPLWLLAYADALEQAGRKDEALRLRRQA 274 (280)
T ss_dssp HHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT---------------
T ss_pred ChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 00 3455678999999999999999999999999999998888888899999999999876653
No 47
>PLN02789 farnesyltranstransferase
Probab=99.12 E-value=6.1e-10 Score=102.80 Aligned_cols=99 Identities=9% Similarity=0.082 Sum_probs=89.4
Q ss_pred chHHHHHHHHhcccCCCCCHHHHHHHHHHHHHcCCH--HHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHH
Q 026773 105 PSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDV--VGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRV 182 (233)
Q Consensus 105 ~~a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~lGdy--eeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al 182 (233)
.++...++.++ +.+|++..+|.+||.+...+|+. +++++.++++|++||++. .. |. .||.++
T Consensus 89 ~eeL~~~~~~i--~~npknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~dpkNy-----~A-W~--------~R~w~l 152 (320)
T PLN02789 89 EEELDFAEDVA--EDNPKNYQIWHHRRWLAEKLGPDAANKELEFTRKILSLDAKNY-----HA-WS--------HRQWVL 152 (320)
T ss_pred HHHHHHHHHHH--HHCCcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhCcccH-----HH-HH--------HHHHHH
Confidence 56778888998 89999999999999999999984 789999999999999998 33 33 599999
Q ss_pred HHcCCcHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHc
Q 026773 183 SHFNRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQL 219 (233)
Q Consensus 183 ~~lGryeeAi~~f~kAL~lnP~d~e~~~~~~l~~a~L 219 (233)
..+|++++|++.++++|++||+|.++|..++.+..++
T Consensus 153 ~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~ 189 (320)
T PLN02789 153 RTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRS 189 (320)
T ss_pred HHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhc
Confidence 9999999999999999999999999999999887765
No 48
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.11 E-value=2.1e-09 Score=96.98 Aligned_cols=127 Identities=7% Similarity=-0.006 Sum_probs=93.5
Q ss_pred hhHHHhccCcchHHHHHHHHhcccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhh
Q 026773 95 APTFTRRLFIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGI 174 (233)
Q Consensus 95 ~~~~~r~~~~~~a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a 174 (233)
...+.+.+-...|...+..++ +.+|.+..++..+|.++...|++++|++.++++++.+|... .. .....
T Consensus 114 a~~~~~~g~~~~A~~~~~~~l--~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~-----~~----~~~~~ 182 (389)
T PRK11788 114 GQDYLKAGLLDRAEELFLQLV--DEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSL-----RV----EIAHF 182 (389)
T ss_pred HHHHHHCCCHHHHHHHHHHHH--cCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcc-----hH----HHHHH
Confidence 344455556677888888887 67888888888888888888888888888888888888654 11 01112
Q ss_pred hhhhHHHHHHcCCcHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhh
Q 026773 175 ILKKLIRVSHFNRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLEA 232 (233)
Q Consensus 175 ~~~rG~al~~lGryeeAi~~f~kAL~lnP~d~e~~~~~~l~~a~Lg~~dEA~~~~l~~ 232 (233)
+.++|.++...|++++|++.|+++++.+|++.+.+...+.++.+.|++++|...+.++
T Consensus 183 ~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 240 (389)
T PRK11788 183 YCELAQQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERV 240 (389)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 3457777778888888888888888888877777777777777778888887776653
No 49
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.10 E-value=3.7e-10 Score=109.95 Aligned_cols=105 Identities=14% Similarity=0.220 Sum_probs=93.1
Q ss_pred HHhccCcchHHHHHHHHhcccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhh
Q 026773 98 FTRRLFIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILK 177 (233)
Q Consensus 98 ~~r~~~~~~a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~ 177 (233)
+-+.+-++.|..-|+++| +.+|+|+..|.||+.++..+|++.+|++|.+++|++||++. ..+. .
T Consensus 368 ~Fk~gdy~~Av~~YteAI--kr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~-----kgy~---------R 431 (539)
T KOG0548|consen 368 AFKKGDYPEAVKHYTEAI--KRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFI-----KAYL---------R 431 (539)
T ss_pred HHhccCHHHHHHHHHHHH--hcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHH-----HHHH---------H
Confidence 344556678889999999 99999999999999999999999999999999999999887 3333 4
Q ss_pred hHHHHHHcCCcHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Q 026773 178 KLIRVSHFNRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQ 218 (233)
Q Consensus 178 rG~al~~lGryeeAi~~f~kAL~lnP~d~e~~~~~~l~~a~ 218 (233)
.|.++..+.+|+.|++.|.+++++||++.+..-|..-|...
T Consensus 432 Kg~al~~mk~ydkAleay~eale~dp~~~e~~~~~~rc~~a 472 (539)
T KOG0548|consen 432 KGAALRAMKEYDKALEAYQEALELDPSNAEAIDGYRRCVEA 472 (539)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHH
Confidence 89999999999999999999999999999988887777664
No 50
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.09 E-value=1.5e-09 Score=92.41 Aligned_cols=129 Identities=12% Similarity=0.029 Sum_probs=103.7
Q ss_pred hHHHhccCcchHHHHHHHHhcccCCCCCHH---HHHHHHHHHHHc--------CCHHHHHHHHHHHHhhCCCCCCCccch
Q 026773 96 PTFTRRLFIPSVSGIWDALTGGNNNSREAV---VAIRRGMLLFRQ--------GDVVGSVAEFDKAIELDPRQKISGKGA 164 (233)
Q Consensus 96 ~~~~r~~~~~~a~~i~~~~i~~~l~P~~a~---Ay~~RG~a~~~l--------GdyeeAIadfdkAIeLdP~~~~~~~~~ 164 (233)
..+.+.+-...|...++.++ +..|+++. +++.+|.+++.. |++++|++.|+++++.+|++..
T Consensus 78 ~~~~~~~~~~~A~~~~~~~l--~~~p~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~----- 150 (235)
T TIGR03302 78 YAYYKSGDYAEAIAAADRFI--RLHPNHPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEY----- 150 (235)
T ss_pred HHHHhcCCHHHHHHHHHHHH--HHCcCCCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChh-----
Confidence 34445556677888999988 88888776 799999999987 8999999999999999999872
Q ss_pred hhhh---------hhhhhhhhhhHHHHHHcCCcHHHHHHHHHHHHcCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHhh
Q 026773 165 YRFT---------ISIVGIILKKLIRVSHFNRFEEGAEQFRIDVAQNPND---TEESIWCFLCEAQLYGVDEARNRFLEA 232 (233)
Q Consensus 165 y~~~---------~~~~~a~~~rG~al~~lGryeeAi~~f~kAL~lnP~d---~e~~~~~~l~~a~Lg~~dEA~~~~l~~ 232 (233)
.+. .........+|..++..|++++|+..|+++++..|++ ++.+..++.++.++|++++|...+.+.
T Consensus 151 -~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l 229 (235)
T TIGR03302 151 -APDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVL 229 (235)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 111 0011122467889999999999999999999997765 467788889999999999999987654
No 51
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=99.08 E-value=5.8e-10 Score=107.41 Aligned_cols=74 Identities=22% Similarity=0.318 Sum_probs=66.3
Q ss_pred cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHHHcCCcHHHHHHHHH
Q 026773 118 NNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSHFNRFEEGAEQFRI 197 (233)
Q Consensus 118 ~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~lGryeeAi~~f~k 197 (233)
+.+|+++++|+++|.+++.+|+|++|++.|++||+++|+++ ...+ +++|+|.+|..+|++++|++++++
T Consensus 69 ~~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~a-----eA~~------A~yNLAcaya~LGr~dEAla~Lrr 137 (453)
T PLN03098 69 EADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPD-----EAQA------AYYNKACCHAYREEGKKAADCLRT 137 (453)
T ss_pred cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCch-----HHHH------HHHHHHHHHHHcCCHHHHHHHHHH
Confidence 57899999999999999999999999999999999999987 3211 134699999999999999999999
Q ss_pred HHHcC
Q 026773 198 DVAQN 202 (233)
Q Consensus 198 AL~ln 202 (233)
|+++.
T Consensus 138 ALels 142 (453)
T PLN03098 138 ALRDY 142 (453)
T ss_pred HHHhc
Confidence 99983
No 52
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.08 E-value=2.5e-09 Score=96.54 Aligned_cols=118 Identities=16% Similarity=0.136 Sum_probs=94.8
Q ss_pred HhccCcchHHHHHHHHhcccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhh
Q 026773 99 TRRLFIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKK 178 (233)
Q Consensus 99 ~r~~~~~~a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~r 178 (233)
.+.+-..+|...+++++ +.+|++..++..+|.++...|++++|++.|+++++.+|.+. ...+ ..+
T Consensus 191 ~~~~~~~~A~~~~~~al--~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~-----~~~~--------~~l 255 (389)
T PRK11788 191 LARGDLDAARALLKKAL--AADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYL-----SEVL--------PKL 255 (389)
T ss_pred HhCCCHHHHHHHHHHHH--hHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhH-----HHHH--------HHH
Confidence 34455667888888888 78899999999999999999999999999999999998764 2222 357
Q ss_pred HHHHHHcCCcHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhh
Q 026773 179 LIRVSHFNRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLEA 232 (233)
Q Consensus 179 G~al~~lGryeeAi~~f~kAL~lnP~d~e~~~~~~l~~a~Lg~~dEA~~~~l~~ 232 (233)
+.++...|++++|++.++++++.+|+... ....+..+.+.|++++|...+.++
T Consensus 256 ~~~~~~~g~~~~A~~~l~~~~~~~p~~~~-~~~la~~~~~~g~~~~A~~~l~~~ 308 (389)
T PRK11788 256 MECYQALGDEAEGLEFLRRALEEYPGADL-LLALAQLLEEQEGPEAAQALLREQ 308 (389)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCchH-HHHHHHHHHHhCCHHHHHHHHHHH
Confidence 88888999999999999999998887643 356667777888999998887653
No 53
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.07 E-value=2.1e-09 Score=108.48 Aligned_cols=118 Identities=6% Similarity=-0.031 Sum_probs=104.2
Q ss_pred hHHHhccCcchHHHHHHHHhcccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhh
Q 026773 96 PTFTRRLFIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGII 175 (233)
Q Consensus 96 ~~~~r~~~~~~a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~ 175 (233)
..+.+.+-.+.|...|.+++ +++|++++++..+|.++...|++++|+..++++++.+|+++ . +.
T Consensus 57 ~~~~~~g~~~~A~~~~~~al--~~~P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~P~~~-----~-~~-------- 120 (765)
T PRK10049 57 VAYRNLKQWQNSLTLWQKAL--SLEPQNDDYQRGLILTLADAGQYDEALVKAKQLVSGAPDKA-----N-LL-------- 120 (765)
T ss_pred HHHHHcCCHHHHHHHHHHHH--HhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH-----H-HH--------
Confidence 34455556678999999999 89999999999999999999999999999999999999998 4 33
Q ss_pred hhhHHHHHHcCCcHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 026773 176 LKKLIRVSHFNRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFL 230 (233)
Q Consensus 176 ~~rG~al~~lGryeeAi~~f~kAL~lnP~d~e~~~~~~l~~a~Lg~~dEA~~~~l 230 (233)
.+|.++...|++++|++.++++++++|++++.+...+.++...+..++|...+.
T Consensus 121 -~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~~e~Al~~l~ 174 (765)
T PRK10049 121 -ALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRLSAPALGAID 174 (765)
T ss_pred -HHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCChHHHHHHHH
Confidence 489999999999999999999999999999988888878878888888887665
No 54
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.06 E-value=1.4e-09 Score=97.41 Aligned_cols=95 Identities=18% Similarity=0.173 Sum_probs=87.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHHHcCCcHHHHHHHHHHHHcCC
Q 026773 124 AVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSHFNRFEEGAEQFRIDVAQNP 203 (233)
Q Consensus 124 a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~lGryeeAi~~f~kAL~lnP 203 (233)
+.+...+|+-|+..||+..|.+-++|||++||++. ..+- -|+.+|...|..+-|-+.|++|+.++|
T Consensus 35 a~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~-----~a~~---------~~A~~Yq~~Ge~~~A~e~YrkAlsl~p 100 (250)
T COG3063 35 AKARLQLALGYLQQGDYAQAKKNLEKALEHDPSYY-----LAHL---------VRAHYYQKLGENDLADESYRKALSLAP 100 (250)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccH-----HHHH---------HHHHHHHHcCChhhHHHHHHHHHhcCC
Confidence 57889999999999999999999999999999988 3333 599999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHhh
Q 026773 204 NDTEESIWCFLCEAQLYGVDEARNRFLEA 232 (233)
Q Consensus 204 ~d~e~~~~~~l~~a~Lg~~dEA~~~~l~~ 232 (233)
++.+...+.|.-+|.+|+++||...|+++
T Consensus 101 ~~GdVLNNYG~FLC~qg~~~eA~q~F~~A 129 (250)
T COG3063 101 NNGDVLNNYGAFLCAQGRPEEAMQQFERA 129 (250)
T ss_pred CccchhhhhhHHHHhCCChHHHHHHHHHH
Confidence 99998777888899999999999999875
No 55
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.06 E-value=1.7e-09 Score=104.67 Aligned_cols=112 Identities=13% Similarity=0.106 Sum_probs=98.9
Q ss_pred chHHHHHHHHhcccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHHH
Q 026773 105 PSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSH 184 (233)
Q Consensus 105 ~~a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~ 184 (233)
++|...+..++ ++||+...+|...|.-+..+++-..||+.|.+|+++||.+. ..|+. +|.+|-.
T Consensus 347 EKAv~YFkRAL--kLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~Dy-----RAWYG---------LGQaYei 410 (559)
T KOG1155|consen 347 EKAVMYFKRAL--KLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDY-----RAWYG---------LGQAYEI 410 (559)
T ss_pred HHHHHHHHHHH--hcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhH-----HHHhh---------hhHHHHH
Confidence 45566666667 99999999999999999999999999999999999999988 45444 9999999
Q ss_pred cCCcHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhh
Q 026773 185 FNRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLEA 232 (233)
Q Consensus 185 lGryeeAi~~f~kAL~lnP~d~e~~~~~~l~~a~Lg~~dEA~~~~l~~ 232 (233)
++-..-|+-.|++|+++.|+|+..|.-+|-|+.++++.+||+.+|..+
T Consensus 411 m~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykra 458 (559)
T KOG1155|consen 411 MKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRA 458 (559)
T ss_pred hcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 999999999999999999999987777888899999999999988654
No 56
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=99.05 E-value=2.7e-10 Score=83.82 Aligned_cols=84 Identities=21% Similarity=0.322 Sum_probs=70.8
Q ss_pred HcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHHHcCCcHHHHHHHHHHHHcCCCCHHHHHHHHHH
Q 026773 136 RQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSHFNRFEEGAEQFRIDVAQNPNDTEESIWCFLC 215 (233)
Q Consensus 136 ~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~lGryeeAi~~f~kAL~lnP~d~e~~~~~~l~ 215 (233)
.+|+|++|+..|+++++.+|.++. ..+++ .+|.+++.+|+|++|++.+++ ++.+|.+++.....+.|
T Consensus 1 ~~~~y~~Ai~~~~k~~~~~~~~~~---~~~~~---------~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~ 67 (84)
T PF12895_consen 1 DQGNYENAIKYYEKLLELDPTNPN---SAYLY---------NLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARC 67 (84)
T ss_dssp HTT-HHHHHHHHHHHHHHHCGTHH---HHHHH---------HHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHH
T ss_pred CCccHHHHHHHHHHHHHHCCCChh---HHHHH---------HHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHH
Confidence 369999999999999999996420 13333 489999999999999999999 99999988888888999
Q ss_pred HHHcCCHHHHHHHHHhh
Q 026773 216 EAQLYGVDEARNRFLEA 232 (233)
Q Consensus 216 ~a~Lg~~dEA~~~~l~~ 232 (233)
+.++|+++||+..+.++
T Consensus 68 ~~~l~~y~eAi~~l~~~ 84 (84)
T PF12895_consen 68 LLKLGKYEEAIKALEKA 84 (84)
T ss_dssp HHHTT-HHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHhcC
Confidence 99999999999999874
No 57
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=99.04 E-value=1.6e-09 Score=93.09 Aligned_cols=97 Identities=11% Similarity=0.079 Sum_probs=83.6
Q ss_pred HHHhccCcchHHHHHHHHhcccCCCCCHHHHHHHHHHH-HHcCC--HHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhh
Q 026773 97 TFTRRLFIPSVSGIWDALTGGNNNSREAVVAIRRGMLL-FRQGD--VVGSVAEFDKAIELDPRQKISGKGAYRFTISIVG 173 (233)
Q Consensus 97 ~~~r~~~~~~a~~i~~~~i~~~l~P~~a~Ay~~RG~a~-~~lGd--yeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~ 173 (233)
.+...+-..+|...|..++ +++|++++++..+|.++ ...|+ +++|++.+++|++++|+++ ..++
T Consensus 82 ~~~~~g~~~~A~~a~~~Al--~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~-----~al~------ 148 (198)
T PRK10370 82 YYLWRNDYDNALLAYRQAL--QLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEV-----TALM------ 148 (198)
T ss_pred HHHHCCCHHHHHHHHHHHH--HhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCCh-----hHHH------
Confidence 3445556678888999888 99999999999999986 67788 5999999999999999998 4444
Q ss_pred hhhhhHHHHHHcCCcHHHHHHHHHHHHcCCCCHHHH
Q 026773 174 IILKKLIRVSHFNRFEEGAEQFRIDVAQNPNDTEES 209 (233)
Q Consensus 174 a~~~rG~al~~lGryeeAi~~f~kAL~lnP~d~e~~ 209 (233)
++|.+++..|++++|++.|+++++++|.+.+..
T Consensus 149 ---~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~~~r~ 181 (198)
T PRK10370 149 ---LLASDAFMQADYAQAIELWQKVLDLNSPRVNRT 181 (198)
T ss_pred ---HHHHHHHHcCCHHHHHHHHHHHHhhCCCCccHH
Confidence 499999999999999999999999999876543
No 58
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=99.04 E-value=1.8e-09 Score=73.30 Aligned_cols=90 Identities=14% Similarity=0.248 Sum_probs=79.2
Q ss_pred HhccCcchHHHHHHHHhcccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhh
Q 026773 99 TRRLFIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKK 178 (233)
Q Consensus 99 ~r~~~~~~a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~r 178 (233)
-+.+-...+...+..++ +..|++..++..+|.++...|++++|++.|++++++.|.+. ..++ .+
T Consensus 11 ~~~~~~~~A~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~---------~~ 74 (100)
T cd00189 11 YKLGDYDEALEYYEKAL--ELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNA-----KAYY---------NL 74 (100)
T ss_pred HHHhcHHHHHHHHHHHH--hcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcch-----hHHH---------HH
Confidence 33445567888888888 88999999999999999999999999999999999999887 3444 49
Q ss_pred HHHHHHcCCcHHHHHHHHHHHHcCCC
Q 026773 179 LIRVSHFNRFEEGAEQFRIDVAQNPN 204 (233)
Q Consensus 179 G~al~~lGryeeAi~~f~kAL~lnP~ 204 (233)
|.++...|++++|.+.++++++.+|+
T Consensus 75 ~~~~~~~~~~~~a~~~~~~~~~~~~~ 100 (100)
T cd00189 75 GLAYYKLGKYEEALEAYEKALELDPN 100 (100)
T ss_pred HHHHHHHHhHHHHHHHHHHHHccCCC
Confidence 99999999999999999999999884
No 59
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=99.03 E-value=1.5e-09 Score=76.89 Aligned_cols=68 Identities=19% Similarity=0.378 Sum_probs=60.2
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHHHcCCcHHHHHHHHHHHHcCCCCHHHHH
Q 026773 131 GMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSHFNRFEEGAEQFRIDVAQNPNDTEESI 210 (233)
Q Consensus 131 G~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~lGryeeAi~~f~kAL~lnP~d~e~~~ 210 (233)
..+++..+++++|++.++++++++|+++ ..++ .+|.++..+|++++|+++|+++++.+|++++...
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~-----~~~~---------~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~ 67 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDP-----ELWL---------QRARCLFQLGRYEEALEDLERALELSPDDPDARA 67 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccc-----hhhH---------HHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHH
Confidence 4678999999999999999999999998 4444 4999999999999999999999999999987654
Q ss_pred HH
Q 026773 211 WC 212 (233)
Q Consensus 211 ~~ 212 (233)
..
T Consensus 68 ~~ 69 (73)
T PF13371_consen 68 LR 69 (73)
T ss_pred HH
Confidence 43
No 60
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.02 E-value=1.1e-09 Score=96.35 Aligned_cols=96 Identities=16% Similarity=0.157 Sum_probs=64.9
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCCCCCccchhhhhhhhhhhhhhhHHHHHHcCCcHHHHHHHHHH
Q 026773 121 SREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELD--PRQKISGKGAYRFTISIVGIILKKLIRVSHFNRFEEGAEQFRID 198 (233)
Q Consensus 121 P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLd--P~~~~~~~~~y~~~~~~~~a~~~rG~al~~lGryeeAi~~f~kA 198 (233)
+.++..+.....++...|+++++.+.++++.+.. |+++ .+|. .+|.++...|+.++|+++|+++
T Consensus 107 ~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~------~~~~--------~~a~~~~~~G~~~~A~~~~~~a 172 (280)
T PF13429_consen 107 DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSA------RFWL--------ALAEIYEQLGDPDKALRDYRKA 172 (280)
T ss_dssp -----------H-HHHTT-HHHHHHHHHHHHH-T---T-H------HHHH--------HHHHHHHHCCHHHHHHHHHHHH
T ss_pred ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCH------HHHH--------HHHHHHHHcCCHHHHHHHHHHH
Confidence 3556777777888999999999999999998766 3333 4443 5999999999999999999999
Q ss_pred HHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 026773 199 VAQNPNDTEESIWCFLCEAQLYGVDEARNRFL 230 (233)
Q Consensus 199 L~lnP~d~e~~~~~~l~~a~Lg~~dEA~~~~l 230 (233)
++++|+|++.....+..+...|+.++|+..+.
T Consensus 173 l~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~ 204 (280)
T PF13429_consen 173 LELDPDDPDARNALAWLLIDMGDYDEAREALK 204 (280)
T ss_dssp HHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHcCCCCHHHHHHHHHHHHHCCChHHHHHHHH
Confidence 99999999876666666667788888666554
No 61
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=99.02 E-value=2.2e-09 Score=108.33 Aligned_cols=100 Identities=10% Similarity=0.017 Sum_probs=94.2
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHHHcCCcHHHHHHHHHH
Q 026773 119 NNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSHFNRFEEGAEQFRID 198 (233)
Q Consensus 119 l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~lGryeeAi~~f~kA 198 (233)
--|++++++.++|.+...+|++++|...++++++++|++. .+.. +++.++.+.++++||+..++++
T Consensus 81 ~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~-----~a~~---------~~a~~L~~~~~~eeA~~~~~~~ 146 (694)
T PRK15179 81 RYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSS-----EAFI---------LMLRGVKRQQGIEAGRAEIELY 146 (694)
T ss_pred hccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcH-----HHHH---------HHHHHHHHhccHHHHHHHHHHH
Confidence 4589999999999999999999999999999999999998 4544 4999999999999999999999
Q ss_pred HHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhh
Q 026773 199 VAQNPNDTEESIWCFLCEAQLYGVDEARNRFLEA 232 (233)
Q Consensus 199 L~lnP~d~e~~~~~~l~~a~Lg~~dEA~~~~l~~ 232 (233)
+..+|++++....++.|+.++|+++||.+.|.++
T Consensus 147 l~~~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~ 180 (694)
T PRK15179 147 FSGGSSSAREILLEAKSWDEIGQSEQADACFERL 180 (694)
T ss_pred hhcCCCCHHHHHHHHHHHHHhcchHHHHHHHHHH
Confidence 9999999999999999999999999999999875
No 62
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.99 E-value=2.4e-09 Score=104.42 Aligned_cols=115 Identities=16% Similarity=0.133 Sum_probs=101.1
Q ss_pred CcchHHHHHHHHhcccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHH
Q 026773 103 FIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRV 182 (233)
Q Consensus 103 ~~~~a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al 182 (233)
..+++...+.... -++|.-+..-...|..+|..|||.+||..|++||..||+++ ..+- ||+.+|
T Consensus 339 ~~Ek~~k~~e~~a--~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~Da-----~lYs---------NRAac~ 402 (539)
T KOG0548|consen 339 EAEKALKEAERKA--YINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPEDA-----RLYS---------NRAACY 402 (539)
T ss_pred HHHHHHHHHHHHH--hhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCchh-----HHHH---------HHHHHH
Confidence 3345555555544 58898899999999999999999999999999999999998 3433 599999
Q ss_pred HHcCCcHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhC
Q 026773 183 SHFNRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLEAR 233 (233)
Q Consensus 183 ~~lGryeeAi~~f~kAL~lnP~d~e~~~~~~l~~a~Lg~~dEA~~~~l~~~ 233 (233)
..+|.+.+|++|.++++++||++...|+-.+.|+..+.+++.|.+.|.+.+
T Consensus 403 ~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eal 453 (539)
T KOG0548|consen 403 LKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEAL 453 (539)
T ss_pred HHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999998763
No 63
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.99 E-value=7.3e-09 Score=83.60 Aligned_cols=98 Identities=12% Similarity=0.113 Sum_probs=84.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHHHcCCcHHHHHHHHHHHHcCC
Q 026773 124 AVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSHFNRFEEGAEQFRIDVAQNP 203 (233)
Q Consensus 124 a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~lGryeeAi~~f~kAL~lnP 203 (233)
|.+++++|.++..+|+.++||..|++|++..+.... . .+++.++|.++..+|++++|+..+++++.-.|
T Consensus 1 ~~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~-----~------~~a~i~lastlr~LG~~deA~~~L~~~~~~~p 69 (120)
T PF12688_consen 1 PRALYELAWAHDSLGREEEAIPLYRRALAAGLSGAD-----R------RRALIQLASTLRNLGRYDEALALLEEALEEFP 69 (120)
T ss_pred CchHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchH-----H------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC
Confidence 468899999999999999999999999998776541 1 13556799999999999999999999999988
Q ss_pred C---CHHHHHHHHHHHHHcCCHHHHHHHHHhh
Q 026773 204 N---DTEESIWCFLCEAQLYGVDEARNRFLEA 232 (233)
Q Consensus 204 ~---d~e~~~~~~l~~a~Lg~~dEA~~~~l~~ 232 (233)
+ +.....+..+++..+|+.+||...++++
T Consensus 70 ~~~~~~~l~~f~Al~L~~~gr~~eAl~~~l~~ 101 (120)
T PF12688_consen 70 DDELNAALRVFLALALYNLGRPKEALEWLLEA 101 (120)
T ss_pred CccccHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 8 6666677788999999999999998864
No 64
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.99 E-value=4.4e-09 Score=94.97 Aligned_cols=116 Identities=11% Similarity=-0.013 Sum_probs=84.9
Q ss_pred HHhccCcchHHHHHHHHhcccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhh
Q 026773 98 FTRRLFIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILK 177 (233)
Q Consensus 98 ~~r~~~~~~a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~ 177 (233)
.-+.+-...|..-..++. .++|+|+++|..+|.+|.+.|++++|-..|.+|+++.|+.+ .. ++|
T Consensus 110 ~~~~g~~~~A~~~~rkA~--~l~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p-----~~---------~nN 173 (257)
T COG5010 110 QIRNGNFGEAVSVLRKAA--RLAPTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEP-----SI---------ANN 173 (257)
T ss_pred HHHhcchHHHHHHHHHHh--ccCCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCc-----hh---------hhh
Confidence 334444555666666666 77888888888888888888888888888888888888877 22 335
Q ss_pred hHHHHHHcCCcHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 026773 178 KLIRVSHFNRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQLYGVDEARNRF 229 (233)
Q Consensus 178 rG~al~~lGryeeAi~~f~kAL~lnP~d~e~~~~~~l~~a~Lg~~dEA~~~~ 229 (233)
+|..++-.||++.|...+..+...-+.|....-++.++....|++++|.+..
T Consensus 174 lgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~ 225 (257)
T COG5010 174 LGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIA 225 (257)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhc
Confidence 8888888888888888888877777767666666677777788888887654
No 65
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=98.98 E-value=8e-09 Score=104.26 Aligned_cols=118 Identities=10% Similarity=0.050 Sum_probs=104.5
Q ss_pred HHhccCcchHHHHHHHHhcccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhh
Q 026773 98 FTRRLFIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILK 177 (233)
Q Consensus 98 ~~r~~~~~~a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~ 177 (233)
....+-...|..+|..+. ..+|..+.++..+|.++..+|++++|++.|+++++++|+++ .... .
T Consensus 25 a~~~g~~~~A~~~~~~~~--~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~-----~a~~---------~ 88 (765)
T PRK10049 25 ALWAGQDAEVITVYNRYR--VHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQND-----DYQR---------G 88 (765)
T ss_pred HHHcCCHHHHHHHHHHHH--hhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-----HHHH---------H
Confidence 334444567788999988 67899999999999999999999999999999999999998 3433 4
Q ss_pred hHHHHHHcCCcHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhh
Q 026773 178 KLIRVSHFNRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLEA 232 (233)
Q Consensus 178 rG~al~~lGryeeAi~~f~kAL~lnP~d~e~~~~~~l~~a~Lg~~dEA~~~~l~~ 232 (233)
+|.++...|++++|++.++++++.+|++++ +...+.++...|+.++|...+.++
T Consensus 89 la~~l~~~g~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~a 142 (765)
T PRK10049 89 LILTLADAGQYDEALVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQA 142 (765)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHH
Confidence 899999999999999999999999999999 888888899999999999998764
No 66
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.98 E-value=8.9e-09 Score=77.14 Aligned_cols=100 Identities=10% Similarity=0.119 Sum_probs=83.7
Q ss_pred hHHHhccCcchHHHHHHHHhcccCCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhh
Q 026773 96 PTFTRRLFIPSVSGIWDALTGGNNNSRE---AVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIV 172 (233)
Q Consensus 96 ~~~~r~~~~~~a~~i~~~~i~~~l~P~~---a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~ 172 (233)
..+.+.+-.++|...+..++ +.+|++ +.+++.+|.++...|++++|+..|+++++.+|+++. . .
T Consensus 10 ~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~-----~------~ 76 (119)
T TIGR02795 10 LLVLKAGDYADAIQAFQAFL--KKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPK-----A------P 76 (119)
T ss_pred HHHHHcCCHHHHHHHHHHHH--HHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCc-----c------c
Confidence 44555566677889999998 677766 689999999999999999999999999999998751 1 1
Q ss_pred hhhhhhHHHHHHcCCcHHHHHHHHHHHHcCCCCHHH
Q 026773 173 GIILKKLIRVSHFNRFEEGAEQFRIDVAQNPNDTEE 208 (233)
Q Consensus 173 ~a~~~rG~al~~lGryeeAi~~f~kAL~lnP~d~e~ 208 (233)
.++...|.++..+|++++|++.++++++..|+++..
T Consensus 77 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~ 112 (119)
T TIGR02795 77 DALLKLGMSLQELGDKEKAKATLQQVIKRYPGSSAA 112 (119)
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHHHCcCChhH
Confidence 123469999999999999999999999999998753
No 67
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.94 E-value=1.6e-08 Score=91.40 Aligned_cols=102 Identities=17% Similarity=0.195 Sum_probs=93.8
Q ss_pred cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHHHcCCcHHHHHHHHH
Q 026773 118 NNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSHFNRFEEGAEQFRI 197 (233)
Q Consensus 118 ~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~lGryeeAi~~f~k 197 (233)
.-+|.+.+.+.-.|..+++.|+|.+|+..+.||.+++|++. .. |+ .+|.+|-..||+++|-..|.+
T Consensus 94 ~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~-----~~-~~--------~lgaaldq~Gr~~~Ar~ay~q 159 (257)
T COG5010 94 IAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDW-----EA-WN--------LLGAALDQLGRFDEARRAYRQ 159 (257)
T ss_pred ccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCCh-----hh-hh--------HHHHHHHHccChhHHHHHHHH
Confidence 36788999988899999999999999999999999999998 33 33 699999999999999999999
Q ss_pred HHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhC
Q 026773 198 DVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLEAR 233 (233)
Q Consensus 198 AL~lnP~d~e~~~~~~l~~a~Lg~~dEA~~~~l~~~ 233 (233)
++++.|+++....+++..+.-.|+.+.|...+++++
T Consensus 160 Al~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~ 195 (257)
T COG5010 160 ALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAY 195 (257)
T ss_pred HHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHH
Confidence 999999999999999999999999999999998763
No 68
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.92 E-value=1.9e-08 Score=89.93 Aligned_cols=101 Identities=13% Similarity=-0.055 Sum_probs=86.5
Q ss_pred cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHHHcCCcHHHHHHHHH
Q 026773 118 NNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSHFNRFEEGAEQFRI 197 (233)
Q Consensus 118 ~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~lGryeeAi~~f~k 197 (233)
..+|....++..+|.++..+|++++|++.++++++++|+++ ..+. .+|.+++..|++++|++.+++
T Consensus 108 ~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~-----~~~~---------~la~i~~~~g~~~eA~~~l~~ 173 (355)
T cd05804 108 PENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDA-----WAVH---------AVAHVLEMQGRFKEGIAFMES 173 (355)
T ss_pred cCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCc-----HHHH---------HHHHHHHHcCCHHHHHHHHHh
Confidence 57788889999999999999999999999999999999988 3433 489999999999999999999
Q ss_pred HHHcCCCCHHH----HHHHHHHHHHcCCHHHHHHHHHhh
Q 026773 198 DVAQNPNDTEE----SIWCFLCEAQLYGVDEARNRFLEA 232 (233)
Q Consensus 198 AL~lnP~d~e~----~~~~~l~~a~Lg~~dEA~~~~l~~ 232 (233)
+++..|.++.. +...+.+...+|++++|...+.++
T Consensus 174 ~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~ 212 (355)
T cd05804 174 WRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTH 212 (355)
T ss_pred hhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 99998865432 234567888999999999988764
No 69
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=98.92 E-value=1e-08 Score=94.01 Aligned_cols=100 Identities=11% Similarity=0.028 Sum_probs=90.5
Q ss_pred cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHHHcC---CcHHHHHH
Q 026773 118 NNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSHFN---RFEEGAEQ 194 (233)
Q Consensus 118 ~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~lG---ryeeAi~~ 194 (233)
..||+|++-|..+|-+++.+|++..|...|.+|++|.|+++ .... ..|.+++... .-.+|.+.
T Consensus 150 ~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~-----~~~~---------g~aeaL~~~a~~~~ta~a~~l 215 (287)
T COG4235 150 QQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNP-----EILL---------GLAEALYYQAGQQMTAKARAL 215 (287)
T ss_pred HhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCH-----HHHH---------HHHHHHHHhcCCcccHHHHHH
Confidence 68999999999999999999999999999999999999999 4433 4888888874 46789999
Q ss_pred HHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHh
Q 026773 195 FRIDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLE 231 (233)
Q Consensus 195 f~kAL~lnP~d~e~~~~~~l~~a~Lg~~dEA~~~~l~ 231 (233)
|++++++||+|..+..++++...+.|++++|...+..
T Consensus 216 l~~al~~D~~~iral~lLA~~afe~g~~~~A~~~Wq~ 252 (287)
T COG4235 216 LRQALALDPANIRALSLLAFAAFEQGDYAEAAAAWQM 252 (287)
T ss_pred HHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHH
Confidence 9999999999999988999999999999999988764
No 70
>PRK15331 chaperone protein SicA; Provisional
Probab=98.92 E-value=8.7e-09 Score=87.82 Aligned_cols=112 Identities=15% Similarity=0.173 Sum_probs=98.5
Q ss_pred HHHHHHHHhcc-------cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhH
Q 026773 107 VSGIWDALTGG-------NNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKL 179 (233)
Q Consensus 107 a~~i~~~~i~~-------~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG 179 (233)
++.+|+.+.++ .+.++.-+..+..|.-++.+|++++|...|.-...+||.++ .|+. .+|
T Consensus 13 ~~~i~~al~~G~tlk~l~gis~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~-----~Y~~---------GLa 78 (165)
T PRK15331 13 AEMIWDAVSEGATLKDVHGIPQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNP-----DYTM---------GLA 78 (165)
T ss_pred HHHHHHHHHCCCCHHHHhCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcH-----HHHH---------HHH
Confidence 45566655421 35677778999999999999999999999999999999998 5654 499
Q ss_pred HHHHHcCCcHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhh
Q 026773 180 IRVSHFNRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLEA 232 (233)
Q Consensus 180 ~al~~lGryeeAi~~f~kAL~lnP~d~e~~~~~~l~~a~Lg~~dEA~~~~l~~ 232 (233)
.++..+++|++|+..|..|..++++||.+.+..+.|+..+|+.++|+..|..|
T Consensus 79 a~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~~~A~~~f~~a 131 (165)
T PRK15331 79 AVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKAAKARQCFELV 131 (165)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999865
No 71
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.91 E-value=1.5e-08 Score=98.25 Aligned_cols=112 Identities=14% Similarity=0.100 Sum_probs=100.6
Q ss_pred cchHHHHHHHHhcccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHH
Q 026773 104 IPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVS 183 (233)
Q Consensus 104 ~~~a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~ 183 (233)
.+.|.+.|..++ +++|.|-.||+.+|.+|..++-+.=|+=-|.||+++.|+++ -.|+ -+|.+|.
T Consensus 380 t~AAi~sYRrAv--di~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDs------Rlw~--------aLG~CY~ 443 (559)
T KOG1155|consen 380 THAAIESYRRAV--DINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDS------RLWV--------ALGECYE 443 (559)
T ss_pred cHHHHHHHHHHH--hcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCch------HHHH--------HHHHHHH
Confidence 367788888888 99999999999999999999999999999999999999998 3454 5999999
Q ss_pred HcCCcHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHh
Q 026773 184 HFNRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLE 231 (233)
Q Consensus 184 ~lGryeeAi~~f~kAL~lnP~d~e~~~~~~l~~a~Lg~~dEA~~~~l~ 231 (233)
++++.+||+++|.+|+..+..+..++..++-...++++.+||...|.+
T Consensus 444 kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~~eAa~~yek 491 (559)
T KOG1155|consen 444 KLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDLNEAAQYYEK 491 (559)
T ss_pred HhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 999999999999999999888777767777778899999999988764
No 72
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.88 E-value=1.3e-08 Score=99.97 Aligned_cols=128 Identities=14% Similarity=0.115 Sum_probs=108.3
Q ss_pred HHhccCcchHHHHHHHHhcccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhh---------
Q 026773 98 FTRRLFIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFT--------- 168 (233)
Q Consensus 98 ~~r~~~~~~a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~--------- 168 (233)
+-+.+-+++|.=.+.+++ +.||.+++||..+|.++...++=..||..+.+|++|||++-. ....
T Consensus 295 lm~nG~L~~A~LafEAAV--kqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~Nle-----aLmaLAVSytNeg 367 (579)
T KOG1125|consen 295 LMKNGDLSEAALAFEAAV--KQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLE-----ALMALAVSYTNEG 367 (579)
T ss_pred HHhcCCchHHHHHHHHHH--hhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHH-----HHHHHHHHHhhhh
Confidence 445556888888899898 999999999999999999999999999999999999999752 1110
Q ss_pred ---------------------------------------------h-----------h--h-hhhhhhhHHHHHHcCCcH
Q 026773 169 ---------------------------------------------I-----------S--I-VGIILKKLIRVSHFNRFE 189 (233)
Q Consensus 169 ---------------------------------------------~-----------~--~-~~a~~~rG~al~~lGrye 189 (233)
+ . + .++...+|+.++..|+|+
T Consensus 368 ~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efd 447 (579)
T KOG1125|consen 368 LQNQALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFD 447 (579)
T ss_pred hHHHHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHH
Confidence 0 0 0 577788999999999999
Q ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhh
Q 026773 190 EGAEQFRIDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLEA 232 (233)
Q Consensus 190 eAi~~f~kAL~lnP~d~e~~~~~~l~~a~Lg~~dEA~~~~l~~ 232 (233)
.|+.||+.||..+|+|.--|.-+|..++.-.+.+||+..|.++
T Consensus 448 raiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rA 490 (579)
T KOG1125|consen 448 RAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRA 490 (579)
T ss_pred HHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHH
Confidence 9999999999999999875555678888888999999988654
No 73
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.87 E-value=1.3e-08 Score=96.30 Aligned_cols=86 Identities=14% Similarity=0.296 Sum_probs=77.2
Q ss_pred cchHHHHHHHHhcccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHH
Q 026773 104 IPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVS 183 (233)
Q Consensus 104 ~~~a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~ 183 (233)
+.+|..-|.+++ +.||++..+++.||.+|..+|+-..|+.|++++|++.|++. +...+ ||.++.
T Consensus 54 ~sDALt~yHaAv--e~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~-----~ARiQ---------Rg~vll 117 (504)
T KOG0624|consen 54 LSDALTHYHAAV--EGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFM-----AARIQ---------RGVVLL 117 (504)
T ss_pred HHHHHHHHHHHH--cCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHH-----HHHHH---------hchhhh
Confidence 345777888888 89999999999999999999999999999999999999987 55555 999999
Q ss_pred HcCCcHHHHHHHHHHHHcCCCC
Q 026773 184 HFNRFEEGAEQFRIDVAQNPND 205 (233)
Q Consensus 184 ~lGryeeAi~~f~kAL~lnP~d 205 (233)
++|.+++|..||+++|.-+|++
T Consensus 118 K~Gele~A~~DF~~vl~~~~s~ 139 (504)
T KOG0624|consen 118 KQGELEQAEADFDQVLQHEPSN 139 (504)
T ss_pred hcccHHHHHHHHHHHHhcCCCc
Confidence 9999999999999999998854
No 74
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=98.85 E-value=6.9e-09 Score=72.88 Aligned_cols=59 Identities=22% Similarity=0.149 Sum_probs=55.3
Q ss_pred hhhhhHHHHHHcCCcHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHhh
Q 026773 174 IILKKLIRVSHFNRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQLY-GVDEARNRFLEA 232 (233)
Q Consensus 174 a~~~rG~al~~lGryeeAi~~f~kAL~lnP~d~e~~~~~~l~~a~Lg-~~dEA~~~~l~~ 232 (233)
++.++|..++..|+|++|++.|+++++++|++++.+.+++.|+..+| ++++|+..+.++
T Consensus 5 ~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~a 64 (69)
T PF13414_consen 5 AWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKA 64 (69)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHH
Confidence 45579999999999999999999999999999999999999999999 799999999875
No 75
>PRK11906 transcriptional regulator; Provisional
Probab=98.84 E-value=4e-08 Score=95.00 Aligned_cols=113 Identities=8% Similarity=-0.058 Sum_probs=100.7
Q ss_pred chHHHHHHHHhc-ccCCCCCHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhh
Q 026773 105 PSVSGIWDALTG-GNNNSREAVVAIRRGMLLFRQ---------GDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGI 174 (233)
Q Consensus 105 ~~a~~i~~~~i~-~~l~P~~a~Ay~~RG~a~~~l---------GdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a 174 (233)
..|..++.+++. .++||+.+.+|..++.+++.. .+-.+|++.-++|+++||+++ ...|.
T Consensus 275 ~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da-----~a~~~------ 343 (458)
T PRK11906 275 YRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDG-----KILAI------ 343 (458)
T ss_pred HHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCH-----HHHHH------
Confidence 346677777763 368999999999999999765 356789999999999999999 67777
Q ss_pred hhhhHHHHHHcCCcHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHh
Q 026773 175 ILKKLIRVSHFNRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLE 231 (233)
Q Consensus 175 ~~~rG~al~~lGryeeAi~~f~kAL~lnP~d~e~~~~~~l~~a~Lg~~dEA~~~~l~ 231 (233)
.|.++...|+++.|+..|++|+.+|||.+..+++.+......|+.++|++.+++
T Consensus 344 ---~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~ 397 (458)
T PRK11906 344 ---MGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDK 397 (458)
T ss_pred ---HHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 899999999999999999999999999999999999999999999999998876
No 76
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.83 E-value=3.1e-09 Score=78.17 Aligned_cols=78 Identities=13% Similarity=0.245 Sum_probs=67.1
Q ss_pred cchHHHHHHHHhcccCCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHH
Q 026773 104 IPSVSGIWDALTGGNNNSR--EAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIR 181 (233)
Q Consensus 104 ~~~a~~i~~~~i~~~l~P~--~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~a 181 (233)
.+.|..++++++ +.+|. ++..++.+|.+++++|+|++|+..+++ ++++|.+. ...+. .|.+
T Consensus 5 y~~Ai~~~~k~~--~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~-----~~~~l---------~a~~ 67 (84)
T PF12895_consen 5 YENAIKYYEKLL--ELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNP-----DIHYL---------LARC 67 (84)
T ss_dssp HHHHHHHHHHHH--HHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHH-----HHHHH---------HHHH
T ss_pred HHHHHHHHHHHH--HHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCH-----HHHHH---------HHHH
Confidence 467888999998 66774 677888899999999999999999999 99999876 45555 7999
Q ss_pred HHHcCCcHHHHHHHHHH
Q 026773 182 VSHFNRFEEGAEQFRID 198 (233)
Q Consensus 182 l~~lGryeeAi~~f~kA 198 (233)
++.+|+|++|++.++++
T Consensus 68 ~~~l~~y~eAi~~l~~~ 84 (84)
T PF12895_consen 68 LLKLGKYEEAIKALEKA 84 (84)
T ss_dssp HHHTT-HHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHhcC
Confidence 99999999999999875
No 77
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.83 E-value=7.9e-08 Score=93.11 Aligned_cols=113 Identities=14% Similarity=0.067 Sum_probs=100.6
Q ss_pred CcchHHHHHHHHhcccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHH
Q 026773 103 FIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRV 182 (233)
Q Consensus 103 ~~~~a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al 182 (233)
-..+|+...+.++ +..|+|+..+-.+|.+++..|+.++|++-+++|+.++|+.+ .. +. ++|.+|
T Consensus 321 ~~d~A~~~l~~L~--~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~-----~l-~~--------~~a~al 384 (484)
T COG4783 321 QYDEALKLLQPLI--AAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSP-----LL-QL--------NLAQAL 384 (484)
T ss_pred ccchHHHHHHHHH--HhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCcc-----HH-HH--------HHHHHH
Confidence 3455788888888 88999999999999999999999999999999999999987 33 33 599999
Q ss_pred HHcCCcHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHh
Q 026773 183 SHFNRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLE 231 (233)
Q Consensus 183 ~~lGryeeAi~~f~kAL~lnP~d~e~~~~~~l~~a~Lg~~dEA~~~~l~ 231 (233)
...|++.||+..+++.+.-+|+|+..|-.++-++..+|+..+|....-|
T Consensus 385 l~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE 433 (484)
T COG4783 385 LKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAE 433 (484)
T ss_pred HhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHH
Confidence 9999999999999999999999999888888888899999888876543
No 78
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.81 E-value=1.2e-07 Score=76.47 Aligned_cols=116 Identities=15% Similarity=0.114 Sum_probs=92.3
Q ss_pred CcchHHHHHHHHhcccCCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhH
Q 026773 103 FIPSVSGIWDALTGGNNNSRE---AVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKL 179 (233)
Q Consensus 103 ~~~~a~~i~~~~i~~~l~P~~---a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG 179 (233)
-...+...++.++ +..|+. ..+...+|.+++..|++++|++.|+++++-.|+.. ... .+.++++
T Consensus 26 ~~~~~~~~~~~l~--~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~------l~~-----~a~l~LA 92 (145)
T PF09976_consen 26 DPAKAEAAAEQLA--KDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPE------LKP-----LARLRLA 92 (145)
T ss_pred CHHHHHHHHHHHH--HHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHH------HHH-----HHHHHHH
Confidence 3455667788888 778888 68888999999999999999999999999886554 111 1345699
Q ss_pred HHHHHcCCcHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhh
Q 026773 180 IRVSHFNRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLEA 232 (233)
Q Consensus 180 ~al~~lGryeeAi~~f~kAL~lnP~d~e~~~~~~l~~a~Lg~~dEA~~~~l~~ 232 (233)
.++...|+|++|++.++. +.-++-.+.....+|-++...|+.++|+..|.++
T Consensus 93 ~~~~~~~~~d~Al~~L~~-~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 93 RILLQQGQYDEALATLQQ-IPDEAFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHcCCHHHHHHHHHh-ccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 999999999999999976 3334444555566788899999999999999864
No 79
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.80 E-value=9.8e-09 Score=98.27 Aligned_cols=126 Identities=14% Similarity=0.176 Sum_probs=98.2
Q ss_pred cchHHHHHHHHhcccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhh-------hh--------
Q 026773 104 IPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYR-------FT-------- 168 (233)
Q Consensus 104 ~~~a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~-------~~-------- 168 (233)
.+++..+--.+. ++|+++.++.+.||.++...++.+.|+..|++++++||+... .|..+. |.
T Consensus 185 ~~~a~~ea~~il--kld~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~-sk~~~~~~k~le~~k~~gN~~fk 261 (486)
T KOG0550|consen 185 YDEAQSEAIDIL--KLDATNAEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQK-SKSASMMPKKLEVKKERGNDAFK 261 (486)
T ss_pred chhHHHHHHHHH--hcccchhHHHHhcccccccccchHHHHHHHhhhhccChhhhh-HHhHhhhHHHHHHHHhhhhhHhh
Confidence 344555555555 889999999999999998888888888888888888887652 010110 00
Q ss_pred --------------h--------hhhhhhhhhHHHHHHcCCcHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHH
Q 026773 169 --------------I--------SIVGIILKKLIRVSHFNRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQLYGVDEAR 226 (233)
Q Consensus 169 --------------~--------~~~~a~~~rG~al~~lGryeeAi~~f~kAL~lnP~d~e~~~~~~l~~a~Lg~~dEA~ 226 (233)
+ ..+--|.||+.+...+||..||+.+.+.|++|||....++..++.|..-++.+++|+
T Consensus 262 ~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~AV 341 (486)
T KOG0550|consen 262 NGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKWEEAV 341 (486)
T ss_pred ccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 013447789999999999999999999999999999998888999999999999999
Q ss_pred HHHHhh
Q 026773 227 NRFLEA 232 (233)
Q Consensus 227 ~~~l~~ 232 (233)
+.+.++
T Consensus 342 ~d~~~a 347 (486)
T KOG0550|consen 342 EDYEKA 347 (486)
T ss_pred HHHHHH
Confidence 988764
No 80
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.80 E-value=9.3e-09 Score=97.19 Aligned_cols=101 Identities=11% Similarity=0.150 Sum_probs=93.3
Q ss_pred cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHHHcCCcHHHHHHHHH
Q 026773 118 NNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSHFNRFEEGAEQFRI 197 (233)
Q Consensus 118 ~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~lGryeeAi~~f~k 197 (233)
.-+|.+.+-+..+|..++..|.+..|+..|..||++||++. ..+ +.||.+|..+|+-..|+.|+++
T Consensus 32 ~~~~advekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y-----~ai---------frRaT~yLAmGksk~al~Dl~r 97 (504)
T KOG0624|consen 32 TASPADVEKHLELGKELLARGQLSDALTHYHAAVEGDPNNY-----QAI---------FRRATVYLAMGKSKAALQDLSR 97 (504)
T ss_pred cCCHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhH-----HHH---------HHHHHHHhhhcCCccchhhHHH
Confidence 35688999999999999999999999999999999999887 344 4599999999999999999999
Q ss_pred HHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhh
Q 026773 198 DVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLEA 232 (233)
Q Consensus 198 AL~lnP~d~e~~~~~~l~~a~Lg~~dEA~~~~l~~ 232 (233)
+|++.|+..-+.+.++..+.++|.+++|.+.|..|
T Consensus 98 VlelKpDF~~ARiQRg~vllK~Gele~A~~DF~~v 132 (504)
T KOG0624|consen 98 VLELKPDFMAARIQRGVVLLKQGELEQAEADFDQV 132 (504)
T ss_pred HHhcCccHHHHHHHhchhhhhcccHHHHHHHHHHH
Confidence 99999999999999999999999999999999765
No 81
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=98.78 E-value=4.3e-08 Score=82.33 Aligned_cols=146 Identities=15% Similarity=0.081 Sum_probs=101.5
Q ss_pred hHhhhhhccCCCCCchhhhHHhhhhccCCcchhhcccccccccccc---ccccchhHHHhccCcchHHHHHHHHhcccCC
Q 026773 44 MALTQHVLKPTINPPLYSFHRSLLTSKAPLSVQTHINSLFSTPRGH---YLQNRAPTFTRRLFIPSVSGIWDALTGGNNN 120 (233)
Q Consensus 44 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~h---~~~~~~~~~~r~~~~~~a~~i~~~~i~~~l~ 120 (233)
.+..|.|+.|..||--- |+-....-....+..+.+..+. .++--.-++...+-+..|.+.|.+++ .+.
T Consensus 3 ~~hdq~vln~i~npl~~-------t~~~~~aE~~lede~~~~~~~e~S~~LEl~~valaE~g~Ld~AlE~F~qal--~l~ 73 (175)
T KOG4555|consen 3 SPHDQQVLDSIFNPLEL-------TNNLIPAESDLKDEEPDTQAIKASRELELKAIALAEAGDLDGALELFGQAL--CLA 73 (175)
T ss_pred cHHHHHHHcccCCcccc-------cccccchhhhhcccCCchHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHH--Hhc
Confidence 35568899998887432 3322211111111122221111 11122234555566677888899888 899
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHHHcCCcHHHHHHHHHHHH
Q 026773 121 SREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSHFNRFEEGAEQFRIDVA 200 (233)
Q Consensus 121 P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~lGryeeAi~~f~kAL~ 200 (233)
|.++.+|.+|+.++..+|+.++|++|.++|++|.-... +.++.. +..||.+|-.+|+-+.|..+|+.|-+
T Consensus 74 P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~t-rtacqa---------~vQRg~lyRl~g~dd~AR~DFe~AA~ 143 (175)
T KOG4555|consen 74 PERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQT-RTACQA---------FVQRGLLYRLLGNDDAARADFEAAAQ 143 (175)
T ss_pred ccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccc-hHHHHH---------HHHHHHHHHHhCchHHHHHhHHHHHH
Confidence 99999999999999999999999999999999986655 233333 44599999999999999999999998
Q ss_pred cCCCCHHH
Q 026773 201 QNPNDTEE 208 (233)
Q Consensus 201 lnP~d~e~ 208 (233)
+....+..
T Consensus 144 LGS~FAr~ 151 (175)
T KOG4555|consen 144 LGSKFARE 151 (175)
T ss_pred hCCHHHHH
Confidence 87765543
No 82
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.77 E-value=1.8e-08 Score=99.06 Aligned_cols=119 Identities=13% Similarity=0.138 Sum_probs=100.9
Q ss_pred chHHHHHHHHhcccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHHH
Q 026773 105 PSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSH 184 (233)
Q Consensus 105 ~~a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~ 184 (233)
.-|+..+.++. .+.|++|-++...|.+.+..++|.+|+..|.++++--+.... ....|. -+.+|+|.++-+
T Consensus 397 kLAe~Ff~~A~--ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~---e~~~w~----p~~~NLGH~~Rk 467 (611)
T KOG1173|consen 397 KLAEKFFKQAL--AIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLN---EKIFWE----PTLNNLGHAYRK 467 (611)
T ss_pred HHHHHHHHHHH--hcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccc---cccchh----HHHHhHHHHHHH
Confidence 44677777777 899999999999999999999999999999999954433320 112343 355689999999
Q ss_pred cCCcHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhh
Q 026773 185 FNRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLEA 232 (233)
Q Consensus 185 lGryeeAi~~f~kAL~lnP~d~e~~~~~~l~~a~Lg~~dEA~~~~l~~ 232 (233)
+++++||+..|+++|.+.|.+++.+.-.|+|...+|+++.|.+.|-++
T Consensus 468 l~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKa 515 (611)
T KOG1173|consen 468 LNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKA 515 (611)
T ss_pred HhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999988654
No 83
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.75 E-value=6.9e-08 Score=79.87 Aligned_cols=95 Identities=13% Similarity=0.190 Sum_probs=78.5
Q ss_pred hHHHhccCcchHHHHHHHHhcccCCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhh
Q 026773 96 PTFTRRLFIPSVSGIWDALTGGNNNSR---EAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIV 172 (233)
Q Consensus 96 ~~~~r~~~~~~a~~i~~~~i~~~l~P~---~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~ 172 (233)
..+.+.+-..+|...+.+++ +++|+ .+.++.++|.++..+|++++|++.+++|++++|++. ..+.
T Consensus 43 ~~~~~~g~~~~A~~~~~~al--~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~-----~~~~----- 110 (172)
T PRK02603 43 MSAQADGEYAEALENYEEAL--KLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQP-----SALN----- 110 (172)
T ss_pred HHHHHcCCHHHHHHHHHHHH--HHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH-----HHHH-----
Confidence 34445555677888999888 55554 367999999999999999999999999999999887 4443
Q ss_pred hhhhhhHHHHHHcCC--------------cHHHHHHHHHHHHcCCCCH
Q 026773 173 GIILKKLIRVSHFNR--------------FEEGAEQFRIDVAQNPNDT 206 (233)
Q Consensus 173 ~a~~~rG~al~~lGr--------------yeeAi~~f~kAL~lnP~d~ 206 (233)
++|.++..+|+ +++|++.++++++++|++.
T Consensus 111 ----~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~p~~~ 154 (172)
T PRK02603 111 ----NIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAPNNY 154 (172)
T ss_pred ----HHHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhCchhH
Confidence 48999999888 6889999999999999875
No 84
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=98.74 E-value=1.5e-07 Score=77.28 Aligned_cols=101 Identities=11% Similarity=0.041 Sum_probs=74.2
Q ss_pred HHhccCcchHHHHHHHHhcccCCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhh
Q 026773 98 FTRRLFIPSVSGIWDALTGGNNNSR---EAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGI 174 (233)
Q Consensus 98 ~~r~~~~~~a~~i~~~~i~~~l~P~---~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a 174 (233)
+...+-...|...+..++ ++.|+ .+.+|.++|.++...|++++|++.|++|++++|.+. ..+.. +..+
T Consensus 45 ~~~~g~~~~A~~~~~~al--~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~-----~~~~~--la~i 115 (168)
T CHL00033 45 AQSEGEYAEALQNYYEAM--RLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLP-----QALNN--MAVI 115 (168)
T ss_pred HHHcCCHHHHHHHHHHHH--hccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcH-----HHHHH--HHHH
Confidence 334445677888888888 55554 457999999999999999999999999999999887 33322 3344
Q ss_pred hhhhHHHHHHcCCcH-------HHHHHHHHHHHcCCCCHH
Q 026773 175 ILKKLIRVSHFNRFE-------EGAEQFRIDVAQNPNDTE 207 (233)
Q Consensus 175 ~~~rG~al~~lGrye-------eAi~~f~kAL~lnP~d~e 207 (233)
+.++|..+..+|+++ +|++.|++++..+|++..
T Consensus 116 ~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~~~ 155 (168)
T CHL00033 116 CHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGNYI 155 (168)
T ss_pred HHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCcccHH
Confidence 444555555888877 556666678888986553
No 85
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=98.73 E-value=1.4e-08 Score=73.06 Aligned_cols=74 Identities=9% Similarity=0.064 Sum_probs=59.9
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHHHcCCcHHHHHHHHHHHH
Q 026773 121 SREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSHFNRFEEGAEQFRIDVA 200 (233)
Q Consensus 121 P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~lGryeeAi~~f~kAL~ 200 (233)
|+-+.++.++|.++..+|+|++|++.|++|+++.-..+ .. ...++.++.++|.++..+|++++|++.++++++
T Consensus 2 ~~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~-----~~--~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 2 PDTANAYNNLARVYRELGRYDEALDYYEKALDIEEQLG-----DD--HPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-----TH--HHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHC-----CC--CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 44578999999999999999999999999998832222 11 112456788999999999999999999999998
Q ss_pred c
Q 026773 201 Q 201 (233)
Q Consensus 201 l 201 (233)
+
T Consensus 75 i 75 (78)
T PF13424_consen 75 I 75 (78)
T ss_dssp H
T ss_pred h
Confidence 6
No 86
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=98.73 E-value=2.2e-07 Score=83.83 Aligned_cols=98 Identities=10% Similarity=0.026 Sum_probs=61.8
Q ss_pred HHHHHHHHHHH-HHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHHHcCCcHHHHHHHHHHHHcC
Q 026773 124 AVVAIRRGMLL-FRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSHFNRFEEGAEQFRIDVAQN 202 (233)
Q Consensus 124 a~Ay~~RG~a~-~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~lGryeeAi~~f~kAL~ln 202 (233)
...++..+..+ +..|+|++|+..|++.++..|+... .....+ .+|.+++..|++++|+..|+++++..
T Consensus 142 e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~-a~~A~y----------~LG~~y~~~g~~~~A~~~f~~vv~~y 210 (263)
T PRK10803 142 ANTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTY-QPNANY----------WLGQLNYNKGKKDDAAYYFASVVKNY 210 (263)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcc-hHHHHH----------HHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 46666676665 4467777777777777777776641 001222 35777777777777777777777666
Q ss_pred CCC---HHHHHHHHHHHHHcCCHHHHHHHHHhh
Q 026773 203 PND---TEESIWCFLCEAQLYGVDEARNRFLEA 232 (233)
Q Consensus 203 P~d---~e~~~~~~l~~a~Lg~~dEA~~~~l~~ 232 (233)
|++ ++.++..+.++..+|+.++|+..+.++
T Consensus 211 P~s~~~~dAl~klg~~~~~~g~~~~A~~~~~~v 243 (263)
T PRK10803 211 PKSPKAADAMFKVGVIMQDKGDTAKAKAVYQQV 243 (263)
T ss_pred CCCcchhHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 653 444455566666677777777766543
No 87
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=98.71 E-value=1.5e-07 Score=92.20 Aligned_cols=111 Identities=6% Similarity=-0.040 Sum_probs=91.4
Q ss_pred chHHHHHHHHhcccCCCCCHHHHHHHHHHHHHc--------CCHHHHHHHHHHHHhh--CCCCCCCccchhhhhhhhhhh
Q 026773 105 PSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQ--------GDVVGSVAEFDKAIEL--DPRQKISGKGAYRFTISIVGI 174 (233)
Q Consensus 105 ~~a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~l--------GdyeeAIadfdkAIeL--dP~~~~~~~~~y~~~~~~~~a 174 (233)
..|.+++.+++ +++|+++.+|..++.++... ++.+++.+..++++++ +|..+ ..+.
T Consensus 359 ~~A~~lle~Ai--~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~~~~~~-----~~~~------- 424 (517)
T PRK10153 359 NKASDLLEEIL--KSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPELNVLP-----RIYE------- 424 (517)
T ss_pred HHHHHHHHHHH--HhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcccCcCCh-----HHHH-------
Confidence 35777888888 99999999999999988664 2355777778887775 66555 2332
Q ss_pred hhhhHHHHHHcCCcHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhh
Q 026773 175 ILKKLIRVSHFNRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLEA 232 (233)
Q Consensus 175 ~~~rG~al~~lGryeeAi~~f~kAL~lnP~d~e~~~~~~l~~a~Lg~~dEA~~~~l~~ 232 (233)
-+|..+...|++++|...+++|++++|+ ...+..++.++...|+.++|.+.+.++
T Consensus 425 --ala~~~~~~g~~~~A~~~l~rAl~L~ps-~~a~~~lG~~~~~~G~~~eA~~~~~~A 479 (517)
T PRK10153 425 --ILAVQALVKGKTDEAYQAINKAIDLEMS-WLNYVLLGKVYELKGDNRLAADAYSTA 479 (517)
T ss_pred --HHHHHHHhcCCHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3788888999999999999999999995 788899999999999999999998875
No 88
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.71 E-value=1.3e-07 Score=84.46 Aligned_cols=115 Identities=14% Similarity=0.155 Sum_probs=85.4
Q ss_pred cchHHHHHHHHhcccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-CCCCCCCccchhhhhhhhhhhhhhhHHHH
Q 026773 104 IPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIEL-DPRQKISGKGAYRFTISIVGIILKKLIRV 182 (233)
Q Consensus 104 ~~~a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeL-dP~~~~~~~~~y~~~~~~~~a~~~rG~al 182 (233)
.+.+..++.+++ +.+|++..++.. |..++..|++.++.....++++. .|.++ ... .++..+|.++
T Consensus 59 ~~~A~~~~~~~l--~~~P~~~~a~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-----~~~------~~~~~~a~~~ 124 (355)
T cd05804 59 LPKALALLEQLL--DDYPRDLLALKL-HLGAFGLGDFSGMRDHVARVLPLWAPENP-----DYW------YLLGMLAFGL 124 (355)
T ss_pred HHHHHHHHHHHH--HHCCCcHHHHHH-hHHHHHhcccccCchhHHHHHhccCcCCC-----CcH------HHHHHHHHHH
Confidence 345666777776 667777777766 66666666666666666666542 23322 111 1234689999
Q ss_pred HHcCCcHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhh
Q 026773 183 SHFNRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLEA 232 (233)
Q Consensus 183 ~~lGryeeAi~~f~kAL~lnP~d~e~~~~~~l~~a~Lg~~dEA~~~~l~~ 232 (233)
...|++++|++.++++++++|+++..+...+.++...|++++|...+.++
T Consensus 125 ~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~ 174 (355)
T cd05804 125 EEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESW 174 (355)
T ss_pred HHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhh
Confidence 99999999999999999999999988888888899999999999988764
No 89
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.70 E-value=3.7e-08 Score=68.67 Aligned_cols=59 Identities=17% Similarity=0.282 Sum_probs=51.4
Q ss_pred HHhccCcchHHHHHHHHhcccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCC
Q 026773 98 FTRRLFIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQK 158 (233)
Q Consensus 98 ~~r~~~~~~a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~ 158 (233)
+-+.+-...|..++..++ +.+|+++++|+.+|.++..+|++++|++.|+++++++|+++
T Consensus 7 ~~~~g~~~~A~~~~~~~l--~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 7 LYQQGDYDEAIAAFEQAL--KQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHCTHHHHHHHHHHHHH--CCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred HHHcCCHHHHHHHHHHHH--HHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 334445577999999999 89999999999999999999999999999999999999874
No 90
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=98.70 E-value=1.6e-07 Score=84.72 Aligned_cols=97 Identities=7% Similarity=0.086 Sum_probs=84.1
Q ss_pred HhccCcchHHHHHHHHhcccCCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhh
Q 026773 99 TRRLFIPSVSGIWDALTGGNNNSRE---AVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGII 175 (233)
Q Consensus 99 ~r~~~~~~a~~i~~~~i~~~l~P~~---a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~ 175 (233)
.+.+-...|...|...+ +..|++ +.+++.+|.+++..|++++|+..|+++++..|+++. . .+++
T Consensus 154 ~~~~~y~~Ai~af~~fl--~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~------~-----~dAl 220 (263)
T PRK10803 154 QDKSRQDDAIVAFQNFV--KKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPK------A-----ADAM 220 (263)
T ss_pred HhcCCHHHHHHHHHHHH--HHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcc------h-----hHHH
Confidence 34455667888899988 889988 689999999999999999999999999999999871 1 2466
Q ss_pred hhhHHHHHHcCCcHHHHHHHHHHHHcCCCCHHH
Q 026773 176 LKKLIRVSHFNRFEEGAEQFRIDVAQNPNDTEE 208 (233)
Q Consensus 176 ~~rG~al~~lGryeeAi~~f~kAL~lnP~d~e~ 208 (233)
++.|.++..+|++++|++.|+++++..|+....
T Consensus 221 ~klg~~~~~~g~~~~A~~~~~~vi~~yP~s~~a 253 (263)
T PRK10803 221 FKVGVIMQDKGDTAKAKAVYQQVIKKYPGTDGA 253 (263)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHH
Confidence 789999999999999999999999999987753
No 91
>PRK11906 transcriptional regulator; Provisional
Probab=98.69 E-value=1.8e-07 Score=90.59 Aligned_cols=98 Identities=9% Similarity=0.033 Sum_probs=80.5
Q ss_pred cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHHHcCCcHHHHHHHHH
Q 026773 118 NNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSHFNRFEEGAEQFRI 197 (233)
Q Consensus 118 ~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~lGryeeAi~~f~k 197 (233)
++||+|+.|+..+|.+....|+++.|+..|++|++++|+++ ..++. +|+++...|+.++|++..++
T Consensus 332 eld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A-----~~~~~---------~~~~~~~~G~~~~a~~~i~~ 397 (458)
T PRK11906 332 DITTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIA-----SLYYY---------RALVHFHNEKIEEARICIDK 397 (458)
T ss_pred hcCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccH-----HHHHH---------HHHHHHHcCCHHHHHHHHHH
Confidence 89999999999999999999999999999999999999998 34444 89999999999999999999
Q ss_pred HHHcCCCCHHHHHHHHHH-HHHcCCHHHHHHHH
Q 026773 198 DVAQNPNDTEESIWCFLC-EAQLYGVDEARNRF 229 (233)
Q Consensus 198 AL~lnP~d~e~~~~~~l~-~a~Lg~~dEA~~~~ 229 (233)
+++++|.-..+.+..-.. ...-...|+|+..+
T Consensus 398 alrLsP~~~~~~~~~~~~~~~~~~~~~~~~~~~ 430 (458)
T PRK11906 398 SLQLEPRRRKAVVIKECVDMYVPNPLKNNIKLY 430 (458)
T ss_pred HhccCchhhHHHHHHHHHHHHcCCchhhhHHHH
Confidence 999999866544332222 12334567776554
No 92
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.69 E-value=1.4e-07 Score=89.73 Aligned_cols=81 Identities=9% Similarity=0.209 Sum_probs=72.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHHHcCCcHHHHHHHHHHHHcCCC
Q 026773 125 VVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSHFNRFEEGAEQFRIDVAQNPN 204 (233)
Q Consensus 125 ~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~lGryeeAi~~f~kAL~lnP~ 204 (233)
.++.|+++++..+++|.+|+...+++|+++|+|. ...++ ||.++..+|+|+.|+.+|.++++++|+
T Consensus 258 ~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~-----KALyR---------rG~A~l~~~e~~~A~~df~ka~k~~P~ 323 (397)
T KOG0543|consen 258 ACHLNLAACYLKLKEYKEAIESCNKVLELDPNNV-----KALYR---------RGQALLALGEYDLARDDFQKALKLEPS 323 (397)
T ss_pred HHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCch-----hHHHH---------HHHHHHhhccHHHHHHHHHHHHHhCCC
Confidence 5789999999999999999999999999999999 56666 999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHc
Q 026773 205 DTEESIWCFLCEAQL 219 (233)
Q Consensus 205 d~e~~~~~~l~~a~L 219 (233)
|.+...-+..|.-+.
T Consensus 324 Nka~~~el~~l~~k~ 338 (397)
T KOG0543|consen 324 NKAARAELIKLKQKI 338 (397)
T ss_pred cHHHHHHHHHHHHHH
Confidence 987766665554443
No 93
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.68 E-value=2.4e-07 Score=93.70 Aligned_cols=100 Identities=17% Similarity=0.104 Sum_probs=92.3
Q ss_pred cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHHHcCCcHHHHH--HH
Q 026773 118 NNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSHFNRFEEGAE--QF 195 (233)
Q Consensus 118 ~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~lGryeeAi~--~f 195 (233)
+++|-.+..|+.+|..+..+|..+||.+.|.-|+.+||+++ +..- .+|.++...|+-.-|.. ..
T Consensus 678 ~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv-----~s~~---------Ala~~lle~G~~~la~~~~~L 743 (799)
T KOG4162|consen 678 KIDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHV-----PSMT---------ALAELLLELGSPRLAEKRSLL 743 (799)
T ss_pred hcchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCc-----HHHH---------HHHHHHHHhCCcchHHHHHHH
Confidence 68999999999999999999999999999999999999998 4433 48999999998888888 99
Q ss_pred HHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHh
Q 026773 196 RIDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLE 231 (233)
Q Consensus 196 ~kAL~lnP~d~e~~~~~~l~~a~Lg~~dEA~~~~l~ 231 (233)
..++++||.++++|++.|....++|+.++|.++|.-
T Consensus 744 ~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~a 779 (799)
T KOG4162|consen 744 SDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQA 779 (799)
T ss_pred HHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHH
Confidence 999999999999999999999999999999999874
No 94
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=98.68 E-value=2e-08 Score=97.14 Aligned_cols=104 Identities=16% Similarity=0.165 Sum_probs=90.6
Q ss_pred cchhHHHhccCcchHHHHHHHHhcccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhh
Q 026773 93 NRAPTFTRRLFIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIV 172 (233)
Q Consensus 93 ~~~~~~~r~~~~~~a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~ 172 (233)
+-+.++-+...+..|...|.++| +++||++..+.+|..++...++|.+|+.|+.+||+++|... ..+..
T Consensus 9 ~ean~~l~~~~fd~avdlysKaI--~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~-----K~Y~r---- 77 (476)
T KOG0376|consen 9 NEANEALKDKVFDVAVDLYSKAI--ELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYI-----KAYVR---- 77 (476)
T ss_pred hHHhhhcccchHHHHHHHHHHHH--hcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhh-----heeee----
Confidence 33445555566778999999999 99999999999999999999999999999999999999887 33344
Q ss_pred hhhhhhHHHHHHcCCcHHHHHHHHHHHHcCCCCHHHHHHH
Q 026773 173 GIILKKLIRVSHFNRFEEGAEQFRIDVAQNPNDTEESIWC 212 (233)
Q Consensus 173 ~a~~~rG~al~~lGryeeAi~~f~kAL~lnP~d~e~~~~~ 212 (233)
||.+...++++.+|+.+|++...+.|+++....-.
T Consensus 78 -----rg~a~m~l~~~~~A~~~l~~~~~l~Pnd~~~~r~~ 112 (476)
T KOG0376|consen 78 -----RGTAVMALGEFKKALLDLEKVKKLAPNDPDATRKI 112 (476)
T ss_pred -----ccHHHHhHHHHHHHHHHHHHhhhcCcCcHHHHHHH
Confidence 89999999999999999999999999999754433
No 95
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.67 E-value=4.2e-08 Score=68.54 Aligned_cols=62 Identities=21% Similarity=0.338 Sum_probs=53.9
Q ss_pred HHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHHHcCCcHHHHHHHHHHHHcCCCCHHHH
Q 026773 134 LFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSHFNRFEEGAEQFRIDVAQNPNDTEES 209 (233)
Q Consensus 134 ~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~lGryeeAi~~f~kAL~lnP~d~e~~ 209 (233)
++..|++++|++.|+++++.+|++. .... .+|.++...|++++|.+.+++++..+|++++.+
T Consensus 1 ll~~~~~~~A~~~~~~~l~~~p~~~-----~~~~---------~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~ 62 (68)
T PF14559_consen 1 LLKQGDYDEAIELLEKALQRNPDNP-----EARL---------LLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQ 62 (68)
T ss_dssp HHHTTHHHHHHHHHHHHHHHTTTSH-----HHHH---------HHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHH
T ss_pred ChhccCHHHHHHHHHHHHHHCCCCH-----HHHH---------HHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHH
Confidence 4678999999999999999999988 4433 599999999999999999999999999986543
No 96
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=98.66 E-value=8.3e-08 Score=90.94 Aligned_cols=148 Identities=16% Similarity=0.214 Sum_probs=85.8
Q ss_pred hhhHhhhhhccCCCC-CchhhhHHhhhhccC-Ccchhhcc-------------ccccccccccccccchhHHHhccCcch
Q 026773 42 TSMALTQHVLKPTIN-PPLYSFHRSLLTSKA-PLSVQTHI-------------NSLFSTPRGHYLQNRAPTFTRRLFIPS 106 (233)
Q Consensus 42 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~-------------n~~~~~~~~h~~~~~~~~~~r~~~~~~ 106 (233)
--|-|.+.-+.|.-| ||.-+-.|.--.|+. |+|.-+.. +.++.. ...+.+.-..+-+.+-..+
T Consensus 38 KDkel~~Q~~~Pan~~~P~r~~FR~~ksGK~~~ssKK~Rs~I~~~dL~vd~I~~~LL~~--~SEiKE~GN~yFKQgKy~E 115 (536)
T KOG4648|consen 38 KDKELQKQPLSPANKDLPVRSHFRTDKSGKESPSSKKARSPIEKQDLPVDPIAQQLLKK--ASEIKERGNTYFKQGKYEE 115 (536)
T ss_pred hhHHHHhCCCCccccCCchhhhcccCCCCCcCcchhhhhcchhhccCCccHHHHHHHHh--hHHHHHhhhhhhhccchhH
Confidence 356777777777654 555554455445554 43332211 111111 0011222234444454455
Q ss_pred HHHHHHHHhcccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHHHcC
Q 026773 107 VSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSHFN 186 (233)
Q Consensus 107 a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~lG 186 (233)
|.++|...+ .++|.|+..+.+|+++|+++.+|..|..|++.|+.||-.+. .||-.||.+...+|
T Consensus 116 AIDCYs~~i--a~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~--------------KAYSRR~~AR~~Lg 179 (536)
T KOG4648|consen 116 AIDCYSTAI--AVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYV--------------KAYSRRMQARESLG 179 (536)
T ss_pred HHHHhhhhh--ccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHH--------------HHHHHHHHHHHHHh
Confidence 666666666 66777777777777777777777777777777777765443 13335777777777
Q ss_pred CcHHHHHHHHHHHHcCCCCHH
Q 026773 187 RFEEGAEQFRIDVAQNPNDTE 207 (233)
Q Consensus 187 ryeeAi~~f~kAL~lnP~d~e 207 (233)
+.+||.+|++.+|++.|++-|
T Consensus 180 ~~~EAKkD~E~vL~LEP~~~E 200 (536)
T KOG4648|consen 180 NNMEAKKDCETVLALEPKNIE 200 (536)
T ss_pred hHHHHHHhHHHHHhhCcccHH
Confidence 777777777777777777554
No 97
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=98.64 E-value=1.8e-07 Score=91.69 Aligned_cols=160 Identities=11% Similarity=-0.023 Sum_probs=103.8
Q ss_pred ccCCCCCchhhh-HHh-----------hhhccCCcchhhccccccccccccccccchhHHHhccCcc-------hHHHHH
Q 026773 51 LKPTINPPLYSF-HRS-----------LLTSKAPLSVQTHINSLFSTPRGHYLQNRAPTFTRRLFIP-------SVSGIW 111 (233)
Q Consensus 51 ~~~~~~~~~~~~-~~~-----------~~~~~~~~~~~~~~n~~~~~~~~h~~~~~~~~~~r~~~~~-------~a~~i~ 111 (233)
.+|+-||.-|.. .|. +..+..-+-++...+|.|+...... +.....+..+.+ .+....
T Consensus 331 ~~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~l---a~~~~~~~~~~~~~~~~l~~a~~~~ 407 (517)
T PRK10153 331 QGLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEK---ALADIVRHSQQPLDEKQLAALSTEL 407 (517)
T ss_pred ccCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHH---HHHHHHHHhcCCccHHHHHHHHHHH
Confidence 456777766542 232 2223334677788888886544432 101111111221 122222
Q ss_pred HHHhcccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHHHcCCcHHH
Q 026773 112 DALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSHFNRFEEG 191 (233)
Q Consensus 112 ~~~i~~~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~lGryeeA 191 (233)
.+++....+|.++.+|..+|..+...|++++|.+.+++|++++|+ . .. |..+|.++...|++++|
T Consensus 408 ~~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps-~-----~a---------~~~lG~~~~~~G~~~eA 472 (517)
T PRK10153 408 DNIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMS-W-----LN---------YVLLGKVYELKGDNRLA 472 (517)
T ss_pred HHhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-H-----HH---------HHHHHHHHHHcCCHHHH
Confidence 223322358899999999999999999999999999999999994 4 22 23489999999999999
Q ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHH-HcCCHHHHHHH
Q 026773 192 AEQFRIDVAQNPNDTEESIWCFLCEA-QLYGVDEARNR 228 (233)
Q Consensus 192 i~~f~kAL~lnP~d~e~~~~~~l~~a-~Lg~~dEA~~~ 228 (233)
++.|++|++++|.++..+.+..+++- .+...+-|..+
T Consensus 473 ~~~~~~A~~L~P~~pt~~~~~~~~f~~~~~~~~~~~~~ 510 (517)
T PRK10153 473 ADAYSTAFNLRPGENTLYWIENLVFQTSVETVVPYLYR 510 (517)
T ss_pred HHHHHHHHhcCCCCchHHHHHhccccccHHHHHHHHHh
Confidence 99999999999999975444444432 34444444433
No 98
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=98.61 E-value=1e-07 Score=82.58 Aligned_cols=93 Identities=19% Similarity=0.296 Sum_probs=72.5
Q ss_pred HhccCcchHHHHHHHHhcccCCCCCHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHhhCCCCCCCccchhhhh
Q 026773 99 TRRLFIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGD----------VVGSVAEFDKAIELDPRQKISGKGAYRFT 168 (233)
Q Consensus 99 ~r~~~~~~a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~lGd----------yeeAIadfdkAIeLdP~~~~~~~~~y~~~ 168 (233)
.|-++++.+...+.... ..||.|++++++-|.++..+.+ +++||.-|++||.|||+.. ..+|+
T Consensus 2 ~rl~~FE~ark~aea~y--~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~h-----dAlw~ 74 (186)
T PF06552_consen 2 ERLLFFEHARKKAEAAY--AKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKH-----DALWC 74 (186)
T ss_dssp HHHHHHHHHHHHHHHHH--HH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-H-----HHHHH
T ss_pred hHHHHHHHHHHHHHHHH--HhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchH-----HHHHH
Confidence 34446777888888877 8999999999999999987743 5789999999999999988 56676
Q ss_pred hhhhhhhhhhHHHHHHcCC-----------cHHHHHHHHHHHHcCCCCHH
Q 026773 169 ISIVGIILKKLIRVSHFNR-----------FEEGAEQFRIDVAQNPNDTE 207 (233)
Q Consensus 169 ~~~~~a~~~rG~al~~lGr-----------yeeAi~~f~kAL~lnP~d~e 207 (233)
+|.++..++. |++|.++|.+|...+|++..
T Consensus 75 ---------lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~~P~ne~ 115 (186)
T PF06552_consen 75 ---------LGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDEDPNNEL 115 (186)
T ss_dssp ---------HHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH-TT-HH
T ss_pred ---------HHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhcCCCcHH
Confidence 7888877765 89999999999999999874
No 99
>PRK14574 hmsH outer membrane protein; Provisional
Probab=98.59 E-value=7.6e-07 Score=91.64 Aligned_cols=112 Identities=6% Similarity=-0.022 Sum_probs=82.7
Q ss_pred chHHHHHHHHhcccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHHH
Q 026773 105 PSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSH 184 (233)
Q Consensus 105 ~~a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~ 184 (233)
..|...+.+++ +.+|+++.+......++...|+.++|+..+++++ +|.+. .+.-. ...|.++..
T Consensus 51 ~~Al~~L~qaL--~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~--~p~n~-----~~~~l-------lalA~ly~~ 114 (822)
T PRK14574 51 APVLDYLQEES--KAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQ--SSMNI-----SSRGL-------ASAARAYRN 114 (822)
T ss_pred HHHHHHHHHHH--hhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhc--cCCCC-----CHHHH-------HHHHHHHHH
Confidence 46777888887 8888886444477777778888888888888888 66554 23222 223667888
Q ss_pred cCCcHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhh
Q 026773 185 FNRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLEA 232 (233)
Q Consensus 185 lGryeeAi~~f~kAL~lnP~d~e~~~~~~l~~a~Lg~~dEA~~~~l~~ 232 (233)
+|+|++|++.|+++++.+|++++.+..........++.++|+..+.++
T Consensus 115 ~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l 162 (822)
T PRK14574 115 EKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATEL 162 (822)
T ss_pred cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHh
Confidence 888888888888888888888877665656667788888888877654
No 100
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=98.57 E-value=8.1e-07 Score=91.01 Aligned_cols=120 Identities=14% Similarity=0.182 Sum_probs=102.7
Q ss_pred chhHHHhccCcchHHHHHHHHhcccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhh
Q 026773 94 RAPTFTRRLFIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVG 173 (233)
Q Consensus 94 ~~~~~~r~~~~~~a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~ 173 (233)
|-..+.| +-...|..+..++| +.+|.++.+|+.+|.++-++||.+.|+..+-.|--|+|++. . .|.
T Consensus 146 AN~lfar-g~~eeA~~i~~EvI--kqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~-----e-~W~----- 211 (895)
T KOG2076|consen 146 ANNLFAR-GDLEEAEEILMEVI--KQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDY-----E-LWK----- 211 (895)
T ss_pred HHHHHHh-CCHHHHHHHHHHHH--HhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCh-----H-HHH-----
Confidence 3334444 55577999999999 99999999999999999999999999999999999999998 3 454
Q ss_pred hhhhhHHHHHHcCCcHHHHHHHHHHHHcCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHh
Q 026773 174 IILKKLIRVSHFNRFEEGAEQFRIDVAQNPNDTEESIWCFLCEA-QLYGVDEARNRFLE 231 (233)
Q Consensus 174 a~~~rG~al~~lGryeeAi~~f~kAL~lnP~d~e~~~~~~l~~a-~Lg~~dEA~~~~l~ 231 (233)
..+...-.+|++++|.-+|++||+.+|.+.+ ++|....+. +.|+...|...|++
T Consensus 212 ---~ladls~~~~~i~qA~~cy~rAI~~~p~n~~-~~~ers~L~~~~G~~~~Am~~f~~ 266 (895)
T KOG2076|consen 212 ---RLADLSEQLGNINQARYCYSRAIQANPSNWE-LIYERSSLYQKTGDLKRAMETFLQ 266 (895)
T ss_pred ---HHHHHHHhcccHHHHHHHHHHHHhcCCcchH-HHHHHHHHHHHhChHHHHHHHHHH
Confidence 4899999999999999999999999999976 466554444 78999999998876
No 101
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=98.55 E-value=1.9e-07 Score=90.27 Aligned_cols=58 Identities=19% Similarity=0.150 Sum_probs=53.7
Q ss_pred hhhhHHHHHHcCCcHHHHHHHHHHHHcCCCCHHH---HHHHHHHHHHcCCHHHHHHHHHhh
Q 026773 175 ILKKLIRVSHFNRFEEGAEQFRIDVAQNPNDTEE---SIWCFLCEAQLYGVDEARNRFLEA 232 (233)
Q Consensus 175 ~~~rG~al~~lGryeeAi~~f~kAL~lnP~d~e~---~~~~~l~~a~Lg~~dEA~~~~l~~ 232 (233)
++|+|.+|+.+|+|++|+++|+++|+++|++++. +++++.|++++|+.+||++.+.++
T Consensus 78 ~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrA 138 (453)
T PLN03098 78 AVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTA 138 (453)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3469999999999999999999999999999975 888999999999999999999875
No 102
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=98.54 E-value=1.3e-07 Score=58.53 Aligned_cols=34 Identities=29% Similarity=0.470 Sum_probs=31.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 026773 124 AVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQ 157 (233)
Q Consensus 124 a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~ 157 (233)
|.+|+++|.++..+|++++|+.+|++||++||++
T Consensus 1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~ 34 (34)
T PF00515_consen 1 AEAYYNLGNAYFQLGDYEEALEYYQRALELDPDN 34 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred CHHHHHHHHHHHHhCCchHHHHHHHHHHHHCcCC
Confidence 5799999999999999999999999999999974
No 103
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.50 E-value=2.7e-07 Score=88.58 Aligned_cols=90 Identities=12% Similarity=0.191 Sum_probs=78.8
Q ss_pred HhccCcchHHHHHHHHhcccCCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhh
Q 026773 99 TRRLFIPSVSGIWDALTGGNNNSR----EAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGI 174 (233)
Q Consensus 99 ~r~~~~~~a~~i~~~~i~~~l~P~----~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a 174 (233)
-+.+....|.++|..+| +++|+ ++.-|.+|+.+..++|+..+||.|.+.|++|||.+. + +
T Consensus 260 fk~G~y~~A~E~Yteal--~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syi--------k------a 323 (486)
T KOG0550|consen 260 FKNGNYRKAYECYTEAL--NIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYI--------K------A 323 (486)
T ss_pred hhccchhHHHHHHHHhh--cCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHH--------H------H
Confidence 35566778999999999 88996 566799999999999999999999999999999654 2 3
Q ss_pred hhhhHHHHHHcCCcHHHHHHHHHHHHcCCC
Q 026773 175 ILKKLIRVSHFNRFEEGAEQFRIDVAQNPN 204 (233)
Q Consensus 175 ~~~rG~al~~lGryeeAi~~f~kAL~lnP~ 204 (233)
++.||.++..+++|++|+++|++|++...+
T Consensus 324 ll~ra~c~l~le~~e~AV~d~~~a~q~~~s 353 (486)
T KOG0550|consen 324 LLRRANCHLALEKWEEAVEDYEKAMQLEKD 353 (486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhccc
Confidence 566999999999999999999999998765
No 104
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.50 E-value=6e-07 Score=80.01 Aligned_cols=93 Identities=14% Similarity=0.260 Sum_probs=76.7
Q ss_pred hccCcchHHHHHHHHhcccCCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhh
Q 026773 100 RRLFIPSVSGIWDALTGGNNNSRE-----AVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGI 174 (233)
Q Consensus 100 r~~~~~~a~~i~~~~i~~~l~P~~-----a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a 174 (233)
+.+....|..-|..++ ++.|.- +.-|.+||.++..++..+.||.+..|||+|+|.+- ..
T Consensus 107 ~ngdyeeA~skY~~Al--e~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~-----kA--------- 170 (271)
T KOG4234|consen 107 KNGDYEEANSKYQEAL--ESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYE-----KA--------- 170 (271)
T ss_pred hcccHHHHHHHHHHHH--HhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhH-----HH---------
Confidence 4445566777888887 666653 46788999999999999999999999999999776 33
Q ss_pred hhhhHHHHHHcCCcHHHHHHHHHHHHcCCCCHHH
Q 026773 175 ILKKLIRVSHFNRFEEGAEQFRIDVAQNPNDTEE 208 (233)
Q Consensus 175 ~~~rG~al~~lGryeeAi~~f~kAL~lnP~d~e~ 208 (233)
+..|+.+|-.+..|++|++||.+.++++|...++
T Consensus 171 l~RRAeayek~ek~eealeDyKki~E~dPs~~ea 204 (271)
T KOG4234|consen 171 LERRAEAYEKMEKYEEALEDYKKILESDPSRREA 204 (271)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHhCcchHHH
Confidence 3458999999999999999999999999987654
No 105
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=98.46 E-value=4.5e-07 Score=64.08 Aligned_cols=58 Identities=14% Similarity=0.264 Sum_probs=53.2
Q ss_pred HhccCcchHHHHHHHHhcccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCC
Q 026773 99 TRRLFIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQK 158 (233)
Q Consensus 99 ~r~~~~~~a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~ 158 (233)
.+..-++.+...++.++ +++|+++.+|..+|.+++.+|++++|+++|+++++++|+++
T Consensus 6 ~~~~~~~~A~~~~~~~l--~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~ 63 (73)
T PF13371_consen 6 LQQEDYEEALEVLERAL--ELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDP 63 (73)
T ss_pred HhCCCHHHHHHHHHHHH--HhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcH
Confidence 34455678899999999 99999999999999999999999999999999999999887
No 106
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=98.46 E-value=3.6e-07 Score=86.69 Aligned_cols=145 Identities=19% Similarity=0.185 Sum_probs=108.4
Q ss_pred hccCCcchhhccccccccccccccccchhHHHhccC-c----chHHHHHHHHhcccCCCCCHHHHHHHHHHHHHcCCHHH
Q 026773 68 TSKAPLSVQTHINSLFSTPRGHYLQNRAPTFTRRLF-I----PSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVG 142 (233)
Q Consensus 68 ~~~~~~~~~~~~n~~~~~~~~h~~~~~~~~~~r~~~-~----~~a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~lGdyee 142 (233)
+-+-|.|.+..++|.-...|-...+..-++-.+.-- + -++.-|-+.++ +.+.-.-.+|+-+|.+|+|+|
T Consensus 42 l~~Q~~~Pan~~~P~r~~FR~~ksGK~~~ssKK~Rs~I~~~dL~vd~I~~~LL------~~~SEiKE~GN~yFKQgKy~E 115 (536)
T KOG4648|consen 42 LQKQPLSPANKDLPVRSHFRTDKSGKESPSSKKARSPIEKQDLPVDPIAQQLL------KKASEIKERGNTYFKQGKYEE 115 (536)
T ss_pred HHhCCCCccccCCchhhhcccCCCCCcCcchhhhhcchhhccCCccHHHHHHH------HhhHHHHHhhhhhhhccchhH
Confidence 445677778888887666665554444222211110 1 12334555555 112226789999999999999
Q ss_pred HHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHHHcCCcHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCH
Q 026773 143 SVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSHFNRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQLYGV 222 (233)
Q Consensus 143 AIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~lGryeeAi~~f~kAL~lnP~d~e~~~~~~l~~a~Lg~~ 222 (233)
||.+|.++|.++|.++ .++- ||+.+|+.+.+|..|..|.+.|+.+|-....+|--++.+...+|..
T Consensus 116 AIDCYs~~ia~~P~Np-----V~~~---------NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~~ 181 (536)
T KOG4648|consen 116 AIDCYSTAIAVYPHNP-----VYHI---------NRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGNN 181 (536)
T ss_pred HHHHhhhhhccCCCCc-----cchh---------hHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhhH
Confidence 9999999999999988 4544 5999999999999999999999999998888877788888899999
Q ss_pred HHHHHHHHhh
Q 026773 223 DEARNRFLEA 232 (233)
Q Consensus 223 dEA~~~~l~~ 232 (233)
+||....+.|
T Consensus 182 ~EAKkD~E~v 191 (536)
T KOG4648|consen 182 MEAKKDCETV 191 (536)
T ss_pred HHHHHhHHHH
Confidence 9999887654
No 107
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=98.45 E-value=2.9e-06 Score=71.41 Aligned_cols=95 Identities=19% Similarity=0.163 Sum_probs=80.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHHHcCCcHHHHHHHHHHHHcCC
Q 026773 124 AVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSHFNRFEEGAEQFRIDVAQNP 203 (233)
Q Consensus 124 a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~lGryeeAi~~f~kAL~lnP 203 (233)
+..+-..|.++...|+.++|++-|.+||.+-|+.+ . +|+||+.++-..|+.++|++++++|+++.-
T Consensus 43 S~~LEl~~valaE~g~Ld~AlE~F~qal~l~P~ra-----S---------ayNNRAQa~RLq~~~e~ALdDLn~AleLag 108 (175)
T KOG4555|consen 43 SRELELKAIALAEAGDLDGALELFGQALCLAPERA-----S---------AYNNRAQALRLQGDDEEALDDLNKALELAG 108 (175)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHHHhcccch-----H---------hhccHHHHHHHcCChHHHHHHHHHHHHhcC
Confidence 34556789999999999999999999999999998 3 345799999999999999999999999976
Q ss_pred CCH----HHHHHHHHHHHHcCCHHHHHHHHHhh
Q 026773 204 NDT----EESIWCFLCEAQLYGVDEARNRFLEA 232 (233)
Q Consensus 204 ~d~----e~~~~~~l~~a~Lg~~dEA~~~~l~~ 232 (233)
.-. .++..++..+..+|+.|.|+..|..+
T Consensus 109 ~~trtacqa~vQRg~lyRl~g~dd~AR~DFe~A 141 (175)
T KOG4555|consen 109 DQTRTACQAFVQRGLLYRLLGNDDAARADFEAA 141 (175)
T ss_pred ccchHHHHHHHHHHHHHHHhCchHHHHHhHHHH
Confidence 543 23456677788999999999998753
No 108
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=98.41 E-value=6.5e-07 Score=54.78 Aligned_cols=34 Identities=29% Similarity=0.464 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 026773 124 AVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQ 157 (233)
Q Consensus 124 a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~ 157 (233)
|++|+.+|.+++.+|++++|+++|++|++++|++
T Consensus 1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 1 AEAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 6789999999999999999999999999999985
No 109
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=98.41 E-value=3.3e-06 Score=79.11 Aligned_cols=58 Identities=14% Similarity=0.008 Sum_probs=49.3
Q ss_pred hhhhhHHHHHHcCCcHHHHHHHH--HHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhh
Q 026773 174 IILKKLIRVSHFNRFEEGAEQFR--IDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLEA 232 (233)
Q Consensus 174 a~~~rG~al~~lGryeeAi~~f~--kAL~lnP~d~e~~~~~~l~~a~Lg~~dEA~~~~l~~ 232 (233)
+....|.+++..|++++|.+.|+ ++++.+|++.. +...+..+.++|+.++|...+.++
T Consensus 337 ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~-~~~La~ll~~~g~~~~A~~~~~~~ 396 (409)
T TIGR00540 337 INRALGQLLMKHGEFIEAADAFKNVAACKEQLDAND-LAMAADAFDQAGDKAEAAAMRQDS 396 (409)
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHH
Confidence 44568999999999999999999 68889997654 567788888999999999988764
No 110
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=98.40 E-value=4.4e-06 Score=69.76 Aligned_cols=99 Identities=10% Similarity=0.062 Sum_probs=81.4
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHHHcCCcHHHHHHHHHHHHc
Q 026773 122 REAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSHFNRFEEGAEQFRIDVAQ 201 (233)
Q Consensus 122 ~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~lGryeeAi~~f~kAL~l 201 (233)
..+..++..|...+..|+|++|++.|+....--|..+ +.-+ +-+++|-+++..|+|++|++.+++-|++
T Consensus 8 ~~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~------ya~q-----AqL~l~yayy~~~~y~~A~a~~~rFirL 76 (142)
T PF13512_consen 8 KSPQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGE------YAEQ-----AQLDLAYAYYKQGDYEEAIAAYDRFIRL 76 (142)
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCc------ccHH-----HHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 4578899999999999999999999999999999776 3333 5567999999999999999999999999
Q ss_pred CCCCHH---HHHHHHHHHHHcCC---------------HHHHHHHHHh
Q 026773 202 NPNDTE---ESIWCFLCEAQLYG---------------VDEARNRFLE 231 (233)
Q Consensus 202 nP~d~e---~~~~~~l~~a~Lg~---------------~dEA~~~~l~ 231 (233)
+|+++. +++.+|++...+.. ..+|...|..
T Consensus 77 hP~hp~vdYa~Y~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~ 124 (142)
T PF13512_consen 77 HPTHPNVDYAYYMRGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQ 124 (142)
T ss_pred CCCCCCccHHHHHHHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHH
Confidence 998765 34566788777765 5667766654
No 111
>PRK15331 chaperone protein SicA; Provisional
Probab=98.39 E-value=2.1e-06 Score=73.35 Aligned_cols=91 Identities=7% Similarity=-0.047 Sum_probs=80.5
Q ss_pred ccCcchHHHHHHHHhcccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHH
Q 026773 101 RLFIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLI 180 (233)
Q Consensus 101 ~~~~~~a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~ 180 (233)
.+-..+|+.+|..+. -.||.+++-|..+|.++..+|+|++|+..|..|..+++++|. + .+. .|.
T Consensus 50 ~Gk~~eA~~~F~~L~--~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~----p-~f~---------agq 113 (165)
T PRK15331 50 QGRLDEAETFFRFLC--IYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYR----P-VFF---------TGQ 113 (165)
T ss_pred CCCHHHHHHHHHHHH--HhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCC----c-cch---------HHH
Confidence 344567888999888 799999999999999999999999999999999999999993 4 444 799
Q ss_pred HHHHcCCcHHHHHHHHHHHHcCCCCHHH
Q 026773 181 RVSHFNRFEEGAEQFRIDVAQNPNDTEE 208 (233)
Q Consensus 181 al~~lGryeeAi~~f~kAL~lnP~d~e~ 208 (233)
.+..+|+.++|.++|..+++ +|.+.+.
T Consensus 114 C~l~l~~~~~A~~~f~~a~~-~~~~~~l 140 (165)
T PRK15331 114 CQLLMRKAAKARQCFELVNE-RTEDESL 140 (165)
T ss_pred HHHHhCCHHHHHHHHHHHHh-CcchHHH
Confidence 99999999999999999999 6776653
No 112
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=98.36 E-value=8.7e-06 Score=72.31 Aligned_cols=87 Identities=9% Similarity=0.027 Sum_probs=72.4
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHHHcCCcHHHHHHHHHHHHc
Q 026773 122 REAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSHFNRFEEGAEQFRIDVAQ 201 (233)
Q Consensus 122 ~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~lGryeeAi~~f~kAL~l 201 (233)
.++..++..|...+..|+|++|++.|++.++..|..+ +.- .+.+.+|.+++.+++|++|+..|++.+++
T Consensus 30 ~~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~------~a~-----~a~l~la~ayy~~~~y~~A~~~~e~fi~~ 98 (243)
T PRK10866 30 NPPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGP------YSQ-----QVQLDLIYAYYKNADLPLAQAAIDRFIRL 98 (243)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCh------HHH-----HHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 5788899999999999999999999999999999876 222 24566899999999999999999999999
Q ss_pred CCCCHHH---HHHHHHHHHHc
Q 026773 202 NPNDTEE---SIWCFLCEAQL 219 (233)
Q Consensus 202 nP~d~e~---~~~~~l~~a~L 219 (233)
.|+++.. ++..++|...+
T Consensus 99 ~P~~~~~~~a~Y~~g~~~~~~ 119 (243)
T PRK10866 99 NPTHPNIDYVLYMRGLTNMAL 119 (243)
T ss_pred CcCCCchHHHHHHHHHhhhhc
Confidence 9987553 45556664444
No 113
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=98.36 E-value=7e-07 Score=80.87 Aligned_cols=94 Identities=19% Similarity=0.218 Sum_probs=84.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHHHcCCcHHHHHHHHHHHHcCCC
Q 026773 125 VVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSHFNRFEEGAEQFRIDVAQNPN 204 (233)
Q Consensus 125 ~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~lGryeeAi~~f~kAL~lnP~ 204 (233)
.-+-..|.-++.-.+|..||.+|.+||.++|..+ .| |+ ||+..++++.+++.+.++.++|++++||
T Consensus 11 ~qlkE~gnk~f~~k~y~~ai~~y~raI~~nP~~~-----~Y-~t--------nralchlk~~~~~~v~~dcrralql~~N 76 (284)
T KOG4642|consen 11 EQLKEQGNKCFIPKRYDDAIDCYSRAICINPTVA-----SY-YT--------NRALCHLKLKHWEPVEEDCRRALQLDPN 76 (284)
T ss_pred HHHHhccccccchhhhchHHHHHHHHHhcCCCcc-----hh-hh--------hHHHHHHHhhhhhhhhhhHHHHHhcChH
Confidence 3445668888999999999999999999999988 34 55 5999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHhh
Q 026773 205 DTEESIWCFLCEAQLYGVDEARNRFLEA 232 (233)
Q Consensus 205 d~e~~~~~~l~~a~Lg~~dEA~~~~l~~ 232 (233)
....++..+.|..+..++++|+..+.++
T Consensus 77 ~vk~h~flg~~~l~s~~~~eaI~~Lqra 104 (284)
T KOG4642|consen 77 LVKAHYFLGQWLLQSKGYDEAIKVLQRA 104 (284)
T ss_pred HHHHHHHHHHHHHhhccccHHHHHHHHH
Confidence 9999999999999999999999988765
No 114
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=98.35 E-value=9.9e-06 Score=75.97 Aligned_cols=113 Identities=9% Similarity=0.023 Sum_probs=94.2
Q ss_pred chHHHHHHHHhcccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHHH
Q 026773 105 PSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSH 184 (233)
Q Consensus 105 ~~a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~ 184 (233)
+.|+....... +..|+....+...|.+...+|++++|.+.++++.+..|+... .... .++.++..
T Consensus 101 ~~A~~~l~~~~--~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l----~~~~---------~~a~l~l~ 165 (409)
T TIGR00540 101 AKAEKLIAKNA--DHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNI----LVEI---------ARTRILLA 165 (409)
T ss_pred HHHHHHHHHHh--hcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCch----HHHH---------HHHHHHHH
Confidence 34444444444 677888888999999999999999999999999999998751 1212 25899999
Q ss_pred cCCcHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhh
Q 026773 185 FNRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLEA 232 (233)
Q Consensus 185 lGryeeAi~~f~kAL~lnP~d~e~~~~~~l~~a~Lg~~dEA~~~~l~~ 232 (233)
.|++++|.+.+++.++.+|+++......+.+..++|++++|...+.+.
T Consensus 166 ~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l 213 (409)
T TIGR00540 166 QNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNM 213 (409)
T ss_pred CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 999999999999999999999998888889999999999998877653
No 115
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.35 E-value=9.1e-07 Score=91.83 Aligned_cols=119 Identities=14% Similarity=0.094 Sum_probs=95.9
Q ss_pred HHHhccCcchHHHHHHHHhcccCCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhh
Q 026773 97 TFTRRLFIPSVSGIWDALTGGNNNSR--EAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGI 174 (233)
Q Consensus 97 ~~~r~~~~~~a~~i~~~~i~~~l~P~--~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a 174 (233)
++.+..-++.|..|.- +.++.+|. -.+.|..||..+...++..+||.+|..|++.||++. ..|.
T Consensus 535 tyae~~~we~a~~I~l--~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~------n~W~------ 600 (1238)
T KOG1127|consen 535 TYAEESTWEEAFEICL--RAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDY------NLWL------ 600 (1238)
T ss_pred HhhccccHHHHHHHHH--HHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCchhH------HHHH------
Confidence 3334444455555522 22355553 347788899999999999999999999999999988 3344
Q ss_pred hhhhHHHHHHcCCcHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHh
Q 026773 175 ILKKLIRVSHFNRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLE 231 (233)
Q Consensus 175 ~~~rG~al~~lGryeeAi~~f~kAL~lnP~d~e~~~~~~l~~a~Lg~~dEA~~~~l~ 231 (233)
.+|.+|...|+|..|++.|++|..++|.+....+..+..++-.|.++||.+.+.+
T Consensus 601 --gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd~GkYkeald~l~~ 655 (1238)
T KOG1127|consen 601 --GLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAVMECDNGKYKEALDALGL 655 (1238)
T ss_pred --HHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 6999999999999999999999999999887777777888899999999998765
No 116
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.33 E-value=2.4e-06 Score=86.36 Aligned_cols=130 Identities=12% Similarity=0.060 Sum_probs=98.4
Q ss_pred ccccccccchhHHHhccCcchHHHHHHHHhcccCCCCCHHHHHHHHHH----------------------------HHHc
Q 026773 86 PRGHYLQNRAPTFTRRLFIPSVSGIWDALTGGNNNSREAVVAIRRGML----------------------------LFRQ 137 (233)
Q Consensus 86 ~~~h~~~~~~~~~~r~~~~~~a~~i~~~~i~~~l~P~~a~Ay~~RG~a----------------------------~~~l 137 (233)
.|.+...+-+..+..-+.-.+|+.|-.+.+ + +|+++..|..+|.+ ....
T Consensus 422 Erlemw~~vi~CY~~lg~~~kaeei~~q~l--e-k~~d~~lyc~LGDv~~d~s~yEkawElsn~~sarA~r~~~~~~~~~ 498 (777)
T KOG1128|consen 422 ERLEMWDPVILCYLLLGQHGKAEEINRQEL--E-KDPDPRLYCLLGDVLHDPSLYEKAWELSNYISARAQRSLALLILSN 498 (777)
T ss_pred HhHHHHHHHHHHHHHhcccchHHHHHHHHh--c-CCCcchhHHHhhhhccChHHHHHHHHHhhhhhHHHHHhhccccccc
Confidence 455555544444544444444555544444 3 45555555555543 3446
Q ss_pred CCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHHHcCCcHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Q 026773 138 GDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSHFNRFEEGAEQFRIDVAQNPNDTEESIWCFLCEA 217 (233)
Q Consensus 138 GdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~lGryeeAi~~f~kAL~lnP~d~e~~~~~~l~~a 217 (233)
++|+++.++++.+++++|-.. ..++ ++|-+..+++++++|+++|.+++.++|++.++|.+...++.
T Consensus 499 ~~fs~~~~hle~sl~~nplq~-----~~wf---------~~G~~ALqlek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi 564 (777)
T KOG1128|consen 499 KDFSEADKHLERSLEINPLQL-----GTWF---------GLGCAALQLEKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYI 564 (777)
T ss_pred hhHHHHHHHHHHHhhcCccch-----hHHH---------hccHHHHHHhhhHHHHHHHHHHhhcCCCchhhhhhhhHHHH
Confidence 999999999999999999877 3333 59999999999999999999999999999999888888899
Q ss_pred HcCCHHHHHHHHHhh
Q 026773 218 QLYGVDEARNRFLEA 232 (233)
Q Consensus 218 ~Lg~~dEA~~~~l~~ 232 (233)
+.+...+|...+.|+
T Consensus 565 ~~~~k~ra~~~l~EA 579 (777)
T KOG1128|consen 565 RLKKKKRAFRKLKEA 579 (777)
T ss_pred HHhhhHHHHHHHHHH
Confidence 999999999888764
No 117
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.33 E-value=4.2e-06 Score=79.79 Aligned_cols=108 Identities=17% Similarity=0.146 Sum_probs=88.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhh--hhhhhhhhhhhhHHHHHHcCCcHHHHHHHHHHHHc
Q 026773 124 AVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYR--FTISIVGIILKKLIRVSHFNRFEEGAEQFRIDVAQ 201 (233)
Q Consensus 124 a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~--~~~~~~~a~~~rG~al~~lGryeeAi~~f~kAL~l 201 (233)
+.-.-.+|..+++.|+|..|+.-|++|+..=+.... .+...- ..--.+..++|++.++.++++|.+|++..+++|++
T Consensus 208 A~~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~-~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~ 286 (397)
T KOG0543|consen 208 ADRKKERGNVLFKEGKFKLAKKRYERAVSFLEYRRS-FDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLEL 286 (397)
T ss_pred HHHHHHhhhHHHhhchHHHHHHHHHHHHHHhhcccc-CCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhc
Confidence 456678999999999999999999999987553320 000000 00012567789999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHhh
Q 026773 202 NPNDTEESIWCFLCEAQLYGVDEARNRFLEA 232 (233)
Q Consensus 202 nP~d~e~~~~~~l~~a~Lg~~dEA~~~~l~~ 232 (233)
+|+|.-+.+-++.|++.+|+++.|+..|.+|
T Consensus 287 ~~~N~KALyRrG~A~l~~~e~~~A~~df~ka 317 (397)
T KOG0543|consen 287 DPNNVKALYRRGQALLALGEYDLARDDFQKA 317 (397)
T ss_pred CCCchhHHHHHHHHHHhhccHHHHHHHHHHH
Confidence 9999999999999999999999999999875
No 118
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=98.33 E-value=6.9e-06 Score=70.35 Aligned_cols=87 Identities=16% Similarity=0.138 Sum_probs=68.1
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHHHcCCcHHHHHHHHHHHHc
Q 026773 122 REAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSHFNRFEEGAEQFRIDVAQ 201 (233)
Q Consensus 122 ~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~lGryeeAi~~f~kAL~l 201 (233)
..+++++..|...+..|+|++|++.|++.+..-|+.+. . -.+.+.+|.+++..|+|++|+..|++.++.
T Consensus 3 ~~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~------a-----~~A~l~la~a~y~~~~y~~A~~~~~~fi~~ 71 (203)
T PF13525_consen 3 DTAEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPY------A-----PQAQLMLAYAYYKQGDYEEAIAAYERFIKL 71 (203)
T ss_dssp --HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTT------H-----HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChH------H-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 46789999999999999999999999999999998772 1 135567899999999999999999999999
Q ss_pred CCCCHH---HHHHHHHHHHHc
Q 026773 202 NPNDTE---ESIWCFLCEAQL 219 (233)
Q Consensus 202 nP~d~e---~~~~~~l~~a~L 219 (233)
.|+++. ++++.+.|...+
T Consensus 72 yP~~~~~~~A~Y~~g~~~~~~ 92 (203)
T PF13525_consen 72 YPNSPKADYALYMLGLSYYKQ 92 (203)
T ss_dssp -TT-TTHHHHHHHHHHHHHHH
T ss_pred CCCCcchhhHHHHHHHHHHHh
Confidence 998753 567777775543
No 119
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=98.33 E-value=4.1e-07 Score=85.52 Aligned_cols=111 Identities=14% Similarity=0.196 Sum_probs=87.3
Q ss_pred HhccCcchHHHHHHHHhcccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhh
Q 026773 99 TRRLFIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKK 178 (233)
Q Consensus 99 ~r~~~~~~a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~r 178 (233)
...+....+.+.++.+| +++|.++..|..||.++..+++...||.|++.||+|||+... .|-| |
T Consensus 125 ln~G~~~~ai~~~t~ai--~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~----~ykf----------r 188 (377)
T KOG1308|consen 125 LNDGEFDTAIELFTSAI--ELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAK----GYKF----------R 188 (377)
T ss_pred hcCcchhhhhccccccc--ccCCchhhhcccccceeeeccCCchhhhhhhhhhccCccccc----ccch----------h
Confidence 33445666777777778 999999999999999999999999999999999999999882 5544 7
Q ss_pred HHHHHHcCCcHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHH
Q 026773 179 LIRVSHFNRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQLYGVDEAR 226 (233)
Q Consensus 179 G~al~~lGryeeAi~~f~kAL~lnP~d~e~~~~~~l~~a~Lg~~dEA~ 226 (233)
|.+...+|++++|..++..+.+++-+.. ...|.--+.-..+..+|-+
T Consensus 189 g~A~rllg~~e~aa~dl~~a~kld~dE~-~~a~lKeV~p~a~ki~e~~ 235 (377)
T KOG1308|consen 189 GYAERLLGNWEEAAHDLALACKLDYDEA-NSATLKEVFPNAGKIEEHR 235 (377)
T ss_pred hHHHHHhhchHHHHHHHHHHHhccccHH-HHHHHHHhccchhhhhhch
Confidence 9999999999999999999999987643 4466544433333333333
No 120
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.33 E-value=4.5e-06 Score=74.52 Aligned_cols=101 Identities=15% Similarity=0.185 Sum_probs=84.6
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHHHcCCcHHHHHHHHHHHHcC
Q 026773 123 EAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSHFNRFEEGAEQFRIDVAQN 202 (233)
Q Consensus 123 ~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~lGryeeAi~~f~kAL~ln 202 (233)
-++.+-.-|.-+|..|+|++|..-|..||++-|.-+. +... --|.|||.++.+++.++.||++..+||+++
T Consensus 94 kad~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~--e~rs-------Ily~Nraaa~iKl~k~e~aI~dcsKaiel~ 164 (271)
T KOG4234|consen 94 KADSLKKEGNELFKNGDYEEANSKYQEALESCPSTST--EERS-------ILYSNRAAALIKLRKWESAIEDCSKAIELN 164 (271)
T ss_pred HHHHHHHHHHHhhhcccHHHHHHHHHHHHHhCccccH--HHHH-------HHHhhhHHHHHHhhhHHHHHHHHHhhHhcC
Confidence 3556677899999999999999999999999998762 1111 124589999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHhh
Q 026773 203 PNDTEESIWCFLCEAQLYGVDEARNRFLEA 232 (233)
Q Consensus 203 P~d~e~~~~~~l~~a~Lg~~dEA~~~~l~~ 232 (233)
|.+-.+..-++.++.+...+++|+..+.++
T Consensus 165 pty~kAl~RRAeayek~ek~eealeDyKki 194 (271)
T KOG4234|consen 165 PTYEKALERRAEAYEKMEKYEEALEDYKKI 194 (271)
T ss_pred chhHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 998877666778888999999999887653
No 121
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.32 E-value=9.4e-06 Score=77.50 Aligned_cols=108 Identities=14% Similarity=0.124 Sum_probs=93.3
Q ss_pred CcchHHHHHHHHhcccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHH
Q 026773 103 FIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRV 182 (233)
Q Consensus 103 ~~~~a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al 182 (233)
-...+..++.++. +.+ +++...++.++...++-.+|++..+++|+.+|+++ ... ...+..+
T Consensus 184 ~~~~ai~lle~L~--~~~---pev~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~-----~LL---------~~Qa~fL 244 (395)
T PF09295_consen 184 RYDEAIELLEKLR--ERD---PEVAVLLARVYLLMNEEVEAIRLLNEALKENPQDS-----ELL---------NLQAEFL 244 (395)
T ss_pred cHHHHHHHHHHHH--hcC---CcHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCH-----HHH---------HHHHHHH
Confidence 4566777887777 444 45777889999999999999999999999999887 332 2478889
Q ss_pred HHcCCcHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 026773 183 SHFNRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQLYGVDEARNRF 229 (233)
Q Consensus 183 ~~lGryeeAi~~f~kAL~lnP~d~e~~~~~~l~~a~Lg~~dEA~~~~ 229 (233)
...++++.|++...+++++.|++-+.|..++.|+.++|++++|+..+
T Consensus 245 l~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaL 291 (395)
T PF09295_consen 245 LSKKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLAL 291 (395)
T ss_pred HhcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999998765
No 122
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.30 E-value=8.7e-06 Score=84.63 Aligned_cols=121 Identities=7% Similarity=-0.098 Sum_probs=94.5
Q ss_pred HHHHHHHHhcccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhh-----------------
Q 026773 107 VSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTI----------------- 169 (233)
Q Consensus 107 a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~----------------- 169 (233)
.++.|..+..+.-+|.+.++|..+..++...|++++|++..+.+++.+|+... .+++..
T Consensus 14 ~ee~~~r~~~~~~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~----~yy~~G~l~~q~~~~~~~~lv~~ 89 (906)
T PRK14720 14 NEEKWTRADANNYSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSIS----ALYISGILSLSRRPLNDSNLLNL 89 (906)
T ss_pred hhhhhhhcccccCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCccee----hHHHHHHHHHhhcchhhhhhhhh
Confidence 35677776656777888888888888888888888888888888888887762 222110
Q ss_pred ------------------hh------hhhhhhhHHHHHHcCCcHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHH
Q 026773 170 ------------------SI------VGIILKKLIRVSHFNRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQLYGVDEA 225 (233)
Q Consensus 170 ------------------~~------~~a~~~rG~al~~lGryeeAi~~f~kAL~lnP~d~e~~~~~~l~~a~Lg~~dEA 225 (233)
.+ -.|+..+|.+|-.+|++++|.+.|++++++||+|+....+.+..++.. +.++|
T Consensus 90 l~~~~~~~~~~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA 168 (906)
T PRK14720 90 IDSFSQNLKWAIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKA 168 (906)
T ss_pred hhhcccccchhHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHH
Confidence 00 156677899999999999999999999999999999888887777777 99999
Q ss_pred HHHHHhh
Q 026773 226 RNRFLEA 232 (233)
Q Consensus 226 ~~~~l~~ 232 (233)
+..+.++
T Consensus 169 ~~m~~KA 175 (906)
T PRK14720 169 ITYLKKA 175 (906)
T ss_pred HHHHHHH
Confidence 9887764
No 123
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=98.27 E-value=1.3e-05 Score=75.09 Aligned_cols=113 Identities=11% Similarity=0.013 Sum_probs=77.1
Q ss_pred hccCcchHHHHHHHHhcccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhH
Q 026773 100 RRLFIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKL 179 (233)
Q Consensus 100 r~~~~~~a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG 179 (233)
+.+-...|..+..... + .|.++......|.+ ..|+++++++..++.++.+|+++ .... -.|
T Consensus 275 ~~g~~~~A~~~L~~~l--~-~~~~~~l~~l~~~l--~~~~~~~al~~~e~~lk~~P~~~-----~l~l---------~lg 335 (398)
T PRK10747 275 ECDDHDTAQQIILDGL--K-RQYDERLVLLIPRL--KTNNPEQLEKVLRQQIKQHGDTP-----LLWS---------TLG 335 (398)
T ss_pred HCCCHHHHHHHHHHHH--h-cCCCHHHHHHHhhc--cCCChHHHHHHHHHHHhhCCCCH-----HHHH---------HHH
Confidence 3333444444554444 3 33344433333332 33666666666666666666665 3333 489
Q ss_pred HHHHHcCCcHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhh
Q 026773 180 IRVSHFNRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLEA 232 (233)
Q Consensus 180 ~al~~lGryeeAi~~f~kAL~lnP~d~e~~~~~~l~~a~Lg~~dEA~~~~l~~ 232 (233)
.++...|++++|.+.|+++++++|++.. +.+.+.++.++|+.++|...+.+.
T Consensus 336 rl~~~~~~~~~A~~~le~al~~~P~~~~-~~~La~~~~~~g~~~~A~~~~~~~ 387 (398)
T PRK10747 336 QLLMKHGEWQEASLAFRAALKQRPDAYD-YAWLADALDRLHKPEEAAAMRRDG 387 (398)
T ss_pred HHHHHCCCHHHHHHHHHHHHhcCCCHHH-HHHHHHHHHHcCCHHHHHHHHHHH
Confidence 9999999999999999999999998654 578888999999999999988753
No 124
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=98.26 E-value=1.6e-05 Score=72.31 Aligned_cols=95 Identities=18% Similarity=0.197 Sum_probs=84.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHHHcCCcHHHHHHHHHHHHcCCCC-
Q 026773 127 AIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSHFNRFEEGAEQFRIDVAQNPND- 205 (233)
Q Consensus 127 y~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~lGryeeAi~~f~kAL~lnP~d- 205 (233)
.++-+.-++..|||.+|...|.+-|.--|+... ...++|| +|.++|.+|+|++|...|..+++-.|+.
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~-~~nA~yW----------LGe~~y~qg~y~~Aa~~f~~~~k~~P~s~ 212 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTY-TPNAYYW----------LGESLYAQGDYEDAAYIFARVVKDYPKSP 212 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcc-cchhHHH----------HHHHHHhcccchHHHHHHHHHHHhCCCCC
Confidence 789999999999999999999999999999873 3445667 5999999999999999999999987764
Q ss_pred --HHHHHHHHHHHHHcCCHHHHHHHHHhh
Q 026773 206 --TEESIWCFLCEAQLYGVDEARNRFLEA 232 (233)
Q Consensus 206 --~e~~~~~~l~~a~Lg~~dEA~~~~l~~ 232 (233)
|+..+-.+.|+..+|+.|+|...+.+|
T Consensus 213 KApdallKlg~~~~~l~~~d~A~atl~qv 241 (262)
T COG1729 213 KAPDALLKLGVSLGRLGNTDEACATLQQV 241 (262)
T ss_pred CChHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 677788899999999999999999876
No 125
>PRK14574 hmsH outer membrane protein; Provisional
Probab=98.24 E-value=1.5e-05 Score=82.24 Aligned_cols=110 Identities=12% Similarity=-0.008 Sum_probs=70.0
Q ss_pred CcchHHHHHHHHhcccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHH
Q 026773 103 FIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRV 182 (233)
Q Consensus 103 ~~~~a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al 182 (233)
-.++|..+|.+++ +.+|++++++..+++++...|++++|++.+++++.++|++. .+ . .++.++
T Consensus 117 dyd~Aiely~kaL--~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~-----~~-l---------~layL~ 179 (822)
T PRK14574 117 RWDQALALWQSSL--KKDPTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQ-----NY-M---------TLSYLN 179 (822)
T ss_pred CHHHHHHHHHHHH--hhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchH-----HH-H---------HHHHHH
Confidence 4446666666666 66777777776666666667777777777777777777644 12 1 134444
Q ss_pred HHcCCcHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 026773 183 SHFNRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQLYGVDEARNRF 229 (233)
Q Consensus 183 ~~lGryeeAi~~f~kAL~lnP~d~e~~~~~~l~~a~Lg~~dEA~~~~ 229 (233)
..++++.+|++.++++++++|++.+.+.....++...|-..-|.+..
T Consensus 180 ~~~~~~~~AL~~~ekll~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~ 226 (822)
T PRK14574 180 RATDRNYDALQASSEAVRLAPTSEEVLKNHLEILQRNRIVEPALRLA 226 (822)
T ss_pred HhcchHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHH
Confidence 44566666777777777777777776666666666666665555443
No 126
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=98.23 E-value=2e-06 Score=77.49 Aligned_cols=96 Identities=16% Similarity=0.106 Sum_probs=88.0
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHHHcCCcHHHHHHHHHHHHc
Q 026773 122 REAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSHFNRFEEGAEQFRIDVAQ 201 (233)
Q Consensus 122 ~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~lGryeeAi~~f~kAL~l 201 (233)
..+..++.||..+-..|-..-|--||++|+.|+|+-+ ..+.. +|+-+...|+|+.|.+.|+-.+++
T Consensus 63 eRA~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~-----~vfNy---------LG~Yl~~a~~fdaa~eaFds~~EL 128 (297)
T COG4785 63 ERAQLLFERGVLYDSLGLRALARNDFSQALAIRPDMP-----EVFNY---------LGIYLTQAGNFDAAYEAFDSVLEL 128 (297)
T ss_pred HHHHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcH-----HHHHH---------HHHHHHhcccchHHHHHhhhHhcc
Confidence 4578899999999999999999999999999999998 44444 999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHh
Q 026773 202 NPNDTEESIWCFLCEAQLYGVDEARNRFLE 231 (233)
Q Consensus 202 nP~d~e~~~~~~l~~a~Lg~~dEA~~~~l~ 231 (233)
||.+--+..++++++..-|++.-|.+.|+.
T Consensus 129 Dp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~ 158 (297)
T COG4785 129 DPTYNYAHLNRGIALYYGGRYKLAQDDLLA 158 (297)
T ss_pred CCcchHHHhccceeeeecCchHhhHHHHHH
Confidence 999988889999999999999999988864
No 127
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.19 E-value=7.1e-06 Score=77.61 Aligned_cols=109 Identities=9% Similarity=0.087 Sum_probs=82.3
Q ss_pred HHHHHhcccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHHHcCCcH
Q 026773 110 IWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSHFNRFE 189 (233)
Q Consensus 110 i~~~~i~~~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~lGrye 189 (233)
.|..++ ++--.+++.+.+.|.+++..+.++-++..|++|+..-.+.. ...|+|+|+|.+..-.|++.
T Consensus 346 yYRRiL--qmG~~speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~-----------~aaDvWYNlg~vaV~iGD~n 412 (478)
T KOG1129|consen 346 YYRRIL--QMGAQSPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPG-----------QAADVWYNLGFVAVTIGDFN 412 (478)
T ss_pred HHHHHH--HhcCCChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcc-----------hhhhhhhccceeEEeccchH
Confidence 344444 44445666666666666666666666666666666543221 11455668999999999999
Q ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHh
Q 026773 190 EGAEQFRIDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLE 231 (233)
Q Consensus 190 eAi~~f~kAL~lnP~d~e~~~~~~l~~a~Lg~~dEA~~~~l~ 231 (233)
-|..+|+-++.-||++.+++.+++...++.|+.++|+..+..
T Consensus 413 lA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~ 454 (478)
T KOG1129|consen 413 LAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNA 454 (478)
T ss_pred HHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHH
Confidence 999999999999999999999998888999999999987754
No 128
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=98.18 E-value=5.3e-06 Score=57.76 Aligned_cols=51 Identities=18% Similarity=0.260 Sum_probs=46.3
Q ss_pred HHHcCCcHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhh
Q 026773 182 VSHFNRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLEA 232 (233)
Q Consensus 182 l~~lGryeeAi~~f~kAL~lnP~d~e~~~~~~l~~a~Lg~~dEA~~~~l~~ 232 (233)
+...|++++|++.|+++++.+|++++..+.++.|+.+.|++++|...+.++
T Consensus 1 ll~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~ 51 (68)
T PF14559_consen 1 LLKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERL 51 (68)
T ss_dssp HHHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCC
T ss_pred ChhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 457899999999999999999999999999999999999999999988764
No 129
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=98.18 E-value=1.7e-05 Score=66.30 Aligned_cols=101 Identities=15% Similarity=0.226 Sum_probs=79.9
Q ss_pred cchhHHHhccCcchHHHHHHHHhcccC---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhh
Q 026773 93 NRAPTFTRRLFIPSVSGIWDALTGGNN---NSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTI 169 (233)
Q Consensus 93 ~~~~~~~r~~~~~~a~~i~~~~i~~~l---~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~ 169 (233)
.+..+++++.+ ..|...|..+. .- .|-...|-..+|.+++..|+|++|++.+++-|+|+|+++. ..|
T Consensus 16 ~a~~~l~~~~Y-~~A~~~le~L~--~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~---vdY---- 85 (142)
T PF13512_consen 16 EAQEALQKGNY-EEAIKQLEALD--TRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPN---VDY---- 85 (142)
T ss_pred HHHHHHHhCCH-HHHHHHHHHHH--hcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCC---ccH----
Confidence 34444444444 44666777775 32 3456789999999999999999999999999999999982 233
Q ss_pred hhhhhhhhhHHHHHHcCC---------------cHHHHHHHHHHHHcCCCCHH
Q 026773 170 SIVGIILKKLIRVSHFNR---------------FEEGAEQFRIDVAQNPNDTE 207 (233)
Q Consensus 170 ~~~~a~~~rG~al~~lGr---------------yeeAi~~f~kAL~lnP~d~e 207 (233)
+++.+|++++.+.+ ..+|..+|+..++.=|+...
T Consensus 86 ----a~Y~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S~y 134 (142)
T PF13512_consen 86 ----AYYMRGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNSEY 134 (142)
T ss_pred ----HHHHHHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCChh
Confidence 35579999999988 89999999999999998764
No 130
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=98.17 E-value=2.1e-06 Score=83.39 Aligned_cols=93 Identities=15% Similarity=0.115 Sum_probs=82.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHHHcCCcHHHHHHHHHHHHcCCCC
Q 026773 126 VAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSHFNRFEEGAEQFRIDVAQNPND 205 (233)
Q Consensus 126 Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~lGryeeAi~~f~kAL~lnP~d 205 (233)
-.-..+...+.-++|+.|+..|.|||+++|+.+ .+ +. +|..++...++|.+|+.|+.+||+++|..
T Consensus 6 e~k~ean~~l~~~~fd~avdlysKaI~ldpnca-----~~-~a--------nRa~a~lK~e~~~~Al~Da~kaie~dP~~ 71 (476)
T KOG0376|consen 6 ELKNEANEALKDKVFDVAVDLYSKAIELDPNCA-----IY-FA--------NRALAHLKVESFGGALHDALKAIELDPTY 71 (476)
T ss_pred hhhhHHhhhcccchHHHHHHHHHHHHhcCCcce-----ee-ec--------hhhhhheeechhhhHHHHHHhhhhcCchh
Confidence 344567778888999999999999999999998 34 43 59999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHhh
Q 026773 206 TEESIWCFLCEAQLYGVDEARNRFLEA 232 (233)
Q Consensus 206 ~e~~~~~~l~~a~Lg~~dEA~~~~l~~ 232 (233)
..+|+.++.+...++.+.+|+..|+.+
T Consensus 72 ~K~Y~rrg~a~m~l~~~~~A~~~l~~~ 98 (476)
T KOG0376|consen 72 IKAYVRRGTAVMALGEFKKALLDLEKV 98 (476)
T ss_pred hheeeeccHHHHhHHHHHHHHHHHHHh
Confidence 998888888888999999999998864
No 131
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=98.12 E-value=7.7e-05 Score=59.59 Aligned_cols=108 Identities=14% Similarity=0.091 Sum_probs=83.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhh--------hhhhhhhhhHHHHHHcCCcHHHHHHHH
Q 026773 125 VVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTI--------SIVGIILKKLIRVSHFNRFEEGAEQFR 196 (233)
Q Consensus 125 ~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~--------~~~~a~~~rG~al~~lGryeeAi~~f~ 196 (233)
+.+...|......|+.+++++.+.+|+.+-......+...+-|.. ..+.+...++..+...|++++|+...+
T Consensus 7 ~~~~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 86 (146)
T PF03704_consen 7 EALVREARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQ 86 (146)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHH
Confidence 344566778888999999999999999997665542212223432 347788888889999999999999999
Q ss_pred HHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhh
Q 026773 197 IDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLEA 232 (233)
Q Consensus 197 kAL~lnP~d~e~~~~~~l~~a~Lg~~dEA~~~~l~~ 232 (233)
+++.++|-+-..+...-.++...|+..+|...|.+.
T Consensus 87 ~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~ 122 (146)
T PF03704_consen 87 RALALDPYDEEAYRLLMRALAAQGRRAEALRVYERY 122 (146)
T ss_dssp HHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 999999999988888889999999999999998765
No 132
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=98.12 E-value=7.7e-05 Score=66.28 Aligned_cols=126 Identities=13% Similarity=0.074 Sum_probs=89.9
Q ss_pred cchhHHHhccCcchHHHHHHHHhcccCCCCCHHHH---HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhh
Q 026773 93 NRAPTFTRRLFIPSVSGIWDALTGGNNNSREAVVA---IRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTI 169 (233)
Q Consensus 93 ~~~~~~~r~~~~~~a~~i~~~~i~~~l~P~~a~Ay---~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~ 169 (233)
.+...+. .+-..+|...|..++ +..|..+.+- +.+|.+++.+|+|++|+..|++.|+++|+++. .++
T Consensus 38 ~A~~~~~-~g~y~~Ai~~f~~l~--~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~---~~~---- 107 (243)
T PRK10866 38 TAQQKLQ-DGNWKQAITQLEALD--NRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPN---IDY---- 107 (243)
T ss_pred HHHHHHH-CCCHHHHHHHHHHHH--HhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCc---hHH----
Confidence 3433333 444557888999998 8889887665 89999999999999999999999999999982 122
Q ss_pred hhhhhhhhhHHHHHHcCC------------------cHHHHHHHHHHHHcCCCCHHHH---HHHHHH-------------
Q 026773 170 SIVGIILKKLIRVSHFNR------------------FEEGAEQFRIDVAQNPNDTEES---IWCFLC------------- 215 (233)
Q Consensus 170 ~~~~a~~~rG~al~~lGr------------------yeeAi~~f~kAL~lnP~d~e~~---~~~~l~------------- 215 (233)
+++.+|.+++.+++ -.+|++.|+..++.-|+....- ..+..+
T Consensus 108 ----a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~la~~e~~ia~ 183 (243)
T PRK10866 108 ----VLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYELSVAE 183 (243)
T ss_pred ----HHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34568888766551 2578999999999999753221 111111
Q ss_pred -HHHcCCHHHHHHHHHhh
Q 026773 216 -EAQLYGVDEARNRFLEA 232 (233)
Q Consensus 216 -~a~Lg~~dEA~~~~l~~ 232 (233)
+.+.|.+..|..++.++
T Consensus 184 ~Y~~~~~y~AA~~r~~~v 201 (243)
T PRK10866 184 YYTKRGAYVAVVNRVEQM 201 (243)
T ss_pred HHHHcCchHHHHHHHHHH
Confidence 33567777777776654
No 133
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=98.11 E-value=3e-06 Score=52.37 Aligned_cols=33 Identities=12% Similarity=0.202 Sum_probs=29.2
Q ss_pred hhhhhhHHHHHHcCCcHHHHHHHHHHHHcCCCC
Q 026773 173 GIILKKLIRVSHFNRFEEGAEQFRIDVAQNPND 205 (233)
Q Consensus 173 ~a~~~rG~al~~lGryeeAi~~f~kAL~lnP~d 205 (233)
.+++++|.++..+|++++|+++|+++++++|++
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~ 34 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPDN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcCC
Confidence 356689999999999999999999999999974
No 134
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=98.07 E-value=6.5e-05 Score=70.46 Aligned_cols=97 Identities=10% Similarity=-0.031 Sum_probs=80.3
Q ss_pred CCHHHHHHHH-HHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHHHcCCcHHHHHHHHHHHH
Q 026773 122 REAVVAIRRG-MLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSHFNRFEEGAEQFRIDVA 200 (233)
Q Consensus 122 ~~a~Ay~~RG-~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~lGryeeAi~~f~kAL~ 200 (233)
+++..++..+ .+-.++|++++|...+.+|.+.+|++. .+... -.+..+...|++++|++.+++.++
T Consensus 115 ~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~-----~~~~l--------~~a~l~l~~g~~~~Al~~l~~~~~ 181 (398)
T PRK10747 115 EQPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQ-----LPVEI--------TRVRIQLARNENHAARHGVDKLLE 181 (398)
T ss_pred cchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcch-----HHHHH--------HHHHHHHHCCCHHHHHHHHHHHHh
Confidence 3466666664 444899999999999999999999875 22211 258899999999999999999999
Q ss_pred cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHh
Q 026773 201 QNPNDTEESIWCFLCEAQLYGVDEARNRFLE 231 (233)
Q Consensus 201 lnP~d~e~~~~~~l~~a~Lg~~dEA~~~~l~ 231 (233)
.+|++++.......++.+.|++++|...+.+
T Consensus 182 ~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~ 212 (398)
T PRK10747 182 VAPRHPEVLRLAEQAYIRTGAWSSLLDILPS 212 (398)
T ss_pred cCCCCHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 9999999888888889999999999966544
No 135
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.05 E-value=3.7e-05 Score=75.69 Aligned_cols=89 Identities=20% Similarity=0.083 Sum_probs=77.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHHHcCCcHHHHHHHHHHHHcCCC
Q 026773 125 VVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSHFNRFEEGAEQFRIDVAQNPN 204 (233)
Q Consensus 125 ~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~lGryeeAi~~f~kAL~lnP~ 204 (233)
++++.++..+...|++++|++..|+||+..|..+ ..+.. +|.++-+.|++++|.+..+.|-.+|+.
T Consensus 195 w~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~-----ely~~---------KarilKh~G~~~~Aa~~~~~Ar~LD~~ 260 (517)
T PF12569_consen 195 WTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLV-----ELYMT---------KARILKHAGDLKEAAEAMDEARELDLA 260 (517)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcH-----HHHHH---------HHHHHHHCCCHHHHHHHHHHHHhCChh
Confidence 6778899999999999999999999999999988 45554 999999999999999999999999998
Q ss_pred CHHHHHHHHHH--HHHcCCHHHHHHHH
Q 026773 205 DTEESIWCFLC--EAQLYGVDEARNRF 229 (233)
Q Consensus 205 d~e~~~~~~l~--~a~Lg~~dEA~~~~ 229 (233)
|. +++.-.+ ..+-|++++|...+
T Consensus 261 DR--yiNsK~aKy~LRa~~~e~A~~~~ 285 (517)
T PF12569_consen 261 DR--YINSKCAKYLLRAGRIEEAEKTA 285 (517)
T ss_pred hH--HHHHHHHHHHHHCCCHHHHHHHH
Confidence 76 4554444 44789999998865
No 136
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=98.05 E-value=1.7e-06 Score=81.45 Aligned_cols=85 Identities=18% Similarity=0.214 Sum_probs=75.9
Q ss_pred HHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHHHcCCcHHHHHHHHHHHHcCCCCHHHHHHH
Q 026773 133 LLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSHFNRFEEGAEQFRIDVAQNPNDTEESIWC 212 (233)
Q Consensus 133 a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~lGryeeAi~~f~kAL~lnP~d~e~~~~~ 212 (233)
-.+-.|++++||++|.+||+++|..+. . +.+|+.|+..+++...|+.+++.|+++||+.+..+-|+
T Consensus 123 eAln~G~~~~ai~~~t~ai~lnp~~a~-----l---------~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfr 188 (377)
T KOG1308|consen 123 EALNDGEFDTAIELFTSAIELNPPLAI-----L---------YAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFR 188 (377)
T ss_pred HHhcCcchhhhhcccccccccCCchhh-----h---------cccccceeeeccCCchhhhhhhhhhccCcccccccchh
Confidence 345679999999999999999998872 2 33699999999999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHh
Q 026773 213 FLCEAQLYGVDEARNRFLE 231 (233)
Q Consensus 213 ~l~~a~Lg~~dEA~~~~l~ 231 (233)
+.+...+|.+++|...+..
T Consensus 189 g~A~rllg~~e~aa~dl~~ 207 (377)
T KOG1308|consen 189 GYAERLLGNWEEAAHDLAL 207 (377)
T ss_pred hHHHHHhhchHHHHHHHHH
Confidence 9999999999999887754
No 137
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=98.04 E-value=5.8e-05 Score=77.78 Aligned_cols=91 Identities=14% Similarity=0.176 Sum_probs=81.1
Q ss_pred HHhccCcchHHHHHHHHhcccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhh
Q 026773 98 FTRRLFIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILK 177 (233)
Q Consensus 98 ~~r~~~~~~a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~ 177 (233)
+..++-..++...|-.+. -++|++.+-|...+.....+|++++|+-+|+|||+++|.+. .+.|.
T Consensus 183 yEqrGd~eK~l~~~llAA--HL~p~d~e~W~~ladls~~~~~i~qA~~cy~rAI~~~p~n~-----~~~~e--------- 246 (895)
T KOG2076|consen 183 YEQRGDIEKALNFWLLAA--HLNPKDYELWKRLADLSEQLGNINQARYCYSRAIQANPSNW-----ELIYE--------- 246 (895)
T ss_pred HHHcccHHHHHHHHHHHH--hcCCCChHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcch-----HHHHH---------
Confidence 344455566777776666 79999999999999999999999999999999999999998 68887
Q ss_pred hHHHHHHcCCcHHHHHHHHHHHHcCCC
Q 026773 178 KLIRVSHFNRFEEGAEQFRIDVAQNPN 204 (233)
Q Consensus 178 rG~al~~lGryeeAi~~f~kAL~lnP~ 204 (233)
|...+.++|+...|+..|.+.+.++|.
T Consensus 247 rs~L~~~~G~~~~Am~~f~~l~~~~p~ 273 (895)
T KOG2076|consen 247 RSSLYQKTGDLKRAMETFLQLLQLDPP 273 (895)
T ss_pred HHHHHHHhChHHHHHHHHHHHHhhCCc
Confidence 999999999999999999999999993
No 138
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.02 E-value=5.8e-05 Score=73.59 Aligned_cols=99 Identities=13% Similarity=0.075 Sum_probs=89.5
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHHHcCCcHHHHHHHHHH
Q 026773 119 NNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSHFNRFEEGAEQFRID 198 (233)
Q Consensus 119 l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~lGryeeAi~~f~kA 198 (233)
.+|.-..+++.++..++..|++++|...++.-|...|+|+ ++|. -+|.++...|+.++|++.++++
T Consensus 301 ~~~~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~------~~~~--------~~~~i~~~~nk~~~A~e~~~ka 366 (484)
T COG4783 301 SKRGGLAAQYGRALQTYLAGQYDEALKLLQPLIAAQPDNP------YYLE--------LAGDILLEANKAKEAIERLKKA 366 (484)
T ss_pred hCccchHHHHHHHHHHHHhcccchHHHHHHHHHHhCCCCH------HHHH--------HHHHHHHHcCChHHHHHHHHHH
Confidence 3488999999999999999999999999999999999998 5554 4899999999999999999999
Q ss_pred HHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHh
Q 026773 199 VAQNPNDTEESIWCFLCEAQLYGVDEARNRFLE 231 (233)
Q Consensus 199 L~lnP~d~e~~~~~~l~~a~Lg~~dEA~~~~l~ 231 (233)
+.++|+.+-..+..+-++.+.|+++||...+..
T Consensus 367 l~l~P~~~~l~~~~a~all~~g~~~eai~~L~~ 399 (484)
T COG4783 367 LALDPNSPLLQLNLAQALLKGGKPQEAIRILNR 399 (484)
T ss_pred HhcCCCccHHHHHHHHHHHhcCChHHHHHHHHH
Confidence 999999877777788888899999999887653
No 139
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=98.02 E-value=4.4e-06 Score=53.17 Aligned_cols=33 Identities=21% Similarity=0.212 Sum_probs=30.3
Q ss_pred HHHHhcccCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 026773 111 WDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVA 145 (233)
Q Consensus 111 ~~~~i~~~l~P~~a~Ay~~RG~a~~~lGdyeeAIa 145 (233)
|.++| +++|+|+++|+++|.++...|++++|++
T Consensus 2 y~kAi--e~~P~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 2 YKKAI--ELNPNNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred hHHHH--HHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence 56777 9999999999999999999999999974
No 140
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=97.99 E-value=1e-05 Score=58.09 Aligned_cols=62 Identities=11% Similarity=0.088 Sum_probs=48.8
Q ss_pred hhhhhhhhHHHHHHcCCcHHHHHHHHHHHHc----CCCCHH---HHHHHHHHHHHcCCHHHHHHHHHhh
Q 026773 171 IVGIILKKLIRVSHFNRFEEGAEQFRIDVAQ----NPNDTE---ESIWCFLCEAQLYGVDEARNRFLEA 232 (233)
Q Consensus 171 ~~~a~~~rG~al~~lGryeeAi~~f~kAL~l----nP~d~e---~~~~~~l~~a~Lg~~dEA~~~~l~~ 232 (233)
++.+++++|.++..+|+|++|++.|++++++ .+++++ .+...+.|...+|++++|...+.++
T Consensus 4 ~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~a 72 (78)
T PF13424_consen 4 TANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKA 72 (78)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3567889999999999999999999999976 223222 3344577888999999999999875
No 141
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.99 E-value=4e-05 Score=75.97 Aligned_cols=175 Identities=18% Similarity=0.148 Sum_probs=123.0
Q ss_pred HhhhhhhhhhhhhHhhhhhc-cCCCCCchhhhHHhhhhccCCcchhhccccccccccccccc----cchhHHHhc-----
Q 026773 32 YYKFCIFFQFTSMALTQHVL-KPTINPPLYSFHRSLLTSKAPLSVQTHINSLFSTPRGHYLQ----NRAPTFTRR----- 101 (233)
Q Consensus 32 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~h~~~----~~~~~~~r~----- 101 (233)
+|.=|-|-++- .+|.-++ +-..|+|.+.+|=.-|.-.. ..|.+|-. +|++- +-.-+|--.
T Consensus 254 ~y~~c~f~~c~--kit~~lle~dpfh~~~~~~~ia~l~el~------~~n~Lf~l--sh~LV~~yP~~a~sW~aVg~YYl 323 (611)
T KOG1173|consen 254 LYYGCRFKECL--KITEELLEKDPFHLPCLPLHIACLYELG------KSNKLFLL--SHKLVDLYPSKALSWFAVGCYYL 323 (611)
T ss_pred HHHcChHHHHH--HHhHHHHhhCCCCcchHHHHHHHHHHhc------ccchHHHH--HHHHHHhCCCCCcchhhHHHHHH
Confidence 33334444332 3444444 34578999999976554332 23444432 12111 111111111
Q ss_pred --cCcchHHHHHHHHhcccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhH
Q 026773 102 --LFIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKL 179 (233)
Q Consensus 102 --~~~~~a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG 179 (233)
+-.++|...+.++. .+||..+.+|...|..+...|+.|+|+++|.+|-++=|.-.. +..+ .|
T Consensus 324 ~i~k~seARry~SKat--~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hl----P~LY----------lg 387 (611)
T KOG1173|consen 324 MIGKYSEARRYFSKAT--TLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHL----PSLY----------LG 387 (611)
T ss_pred HhcCcHHHHHHHHHHh--hcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcc----hHHH----------HH
Confidence 13356777777777 899999999999999999999999999999999999998774 5554 69
Q ss_pred HHHHHcCCcHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhh
Q 026773 180 IRVSHFNRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLEA 232 (233)
Q Consensus 180 ~al~~lGryeeAi~~f~kAL~lnP~d~e~~~~~~l~~a~Lg~~dEA~~~~l~~ 232 (233)
.-+..+++++-|.+-|..|+.+.|+||-...-.|.....-+.+.+|...|..+
T Consensus 388 mey~~t~n~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~ 440 (611)
T KOG1173|consen 388 MEYMRTNNLKLAEKFFKQALAIAPSDPLVLHELGVVAYTYEEYPEALKYFQKA 440 (611)
T ss_pred HHHHHhccHHHHHHHHHHHHhcCCCcchhhhhhhheeehHhhhHHHHHHHHHH
Confidence 99999999999999999999999999966555665555678899999988764
No 142
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=97.99 E-value=1.2e-05 Score=49.45 Aligned_cols=34 Identities=29% Similarity=0.427 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 026773 124 AVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQ 157 (233)
Q Consensus 124 a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~ 157 (233)
+++|+.+|.++..+|++++|++.|++|++++|++
T Consensus 1 a~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~n 34 (34)
T PF13181_consen 1 AEAYYNLGKIYEQLGDYEEALEYFEKALELNPDN 34 (34)
T ss_dssp -HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT-
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 4789999999999999999999999999999964
No 143
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.96 E-value=0.0001 Score=59.57 Aligned_cols=96 Identities=15% Similarity=0.064 Sum_probs=75.6
Q ss_pred chhHHHhccCcchHHHHHHHHhcccC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhh
Q 026773 94 RAPTFTRRLFIPSVSGIWDALTGGNN-NSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIV 172 (233)
Q Consensus 94 ~~~~~~r~~~~~~a~~i~~~~i~~~l-~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~ 172 (233)
.+.+++..+-..+|..+|.+++...+ .+.-..+++.+|.++..+|++++|++.++++++-.|++.. ......
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~--~~~l~~----- 79 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDEL--NAALRV----- 79 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccc--cHHHHH-----
Confidence 44556666777889999999984323 3345789999999999999999999999999999898431 002222
Q ss_pred hhhhhhHHHHHHcCCcHHHHHHHHHHHH
Q 026773 173 GIILKKLIRVSHFNRFEEGAEQFRIDVA 200 (233)
Q Consensus 173 ~a~~~rG~al~~lGryeeAi~~f~kAL~ 200 (233)
-.+.+++.+|+++||++.+-.++.
T Consensus 80 ----f~Al~L~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 80 ----FLALALYNLGRPKEALEWLLEALA 103 (120)
T ss_pred ----HHHHHHHHCCCHHHHHHHHHHHHH
Confidence 378999999999999999988876
No 144
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=97.94 E-value=3.6e-05 Score=79.86 Aligned_cols=118 Identities=13% Similarity=0.120 Sum_probs=98.8
Q ss_pred hccCcchHHHHHHHHhcccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhH
Q 026773 100 RRLFIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKL 179 (233)
Q Consensus 100 r~~~~~~a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG 179 (233)
.+....+|..+|.+++ ..+|.|..|-...|.++...|++.+|++.|.++.+---++. +.|+|.|
T Consensus 624 ~kk~~~KAlq~y~kvL--~~dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~--------------dv~lNla 687 (1018)
T KOG2002|consen 624 EKKHQEKALQLYGKVL--RNDPKNMYAANGIGIVLAEKGRFSEARDIFSQVREATSDFE--------------DVWLNLA 687 (1018)
T ss_pred HHHHHHHHHHHHHHHH--hcCcchhhhccchhhhhhhccCchHHHHHHHHHHHHHhhCC--------------ceeeeHH
Confidence 3345677899999999 99999999999999999999999999999999988665554 2334799
Q ss_pred HHHHHcCCcHHHHHHHHHHHHcCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHhhC
Q 026773 180 IRVSHFNRFEEGAEQFRIDVAQNP--NDTEESIWCFLCEAQLYGVDEARNRFLEAR 233 (233)
Q Consensus 180 ~al~~lGryeeAi~~f~kAL~lnP--~d~e~~~~~~l~~a~Lg~~dEA~~~~l~~~ 233 (233)
.+|..+|+|-.||+.|+.+++.-- ++++....++.+....|++.+|.+..+.+|
T Consensus 688 h~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~ 743 (1018)
T KOG2002|consen 688 HCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKAR 743 (1018)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 999999999999999999998533 456655666666778899999999998875
No 145
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.94 E-value=6.7e-05 Score=69.13 Aligned_cols=92 Identities=12% Similarity=0.050 Sum_probs=79.8
Q ss_pred hccCcchHHHHHHHHhcccCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhh
Q 026773 100 RRLFIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQG---DVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIIL 176 (233)
Q Consensus 100 r~~~~~~a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~lG---dyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~ 176 (233)
+.+-...|...|..++ ++.|+|++.+...|.++..+. +-.+|.+.|++|+++||.+. ...+.
T Consensus 168 ~~~~~~~A~~AY~~A~--rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~i-----ral~l-------- 232 (287)
T COG4235 168 ALGRASDALLAYRNAL--RLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANI-----RALSL-------- 232 (287)
T ss_pred HhcchhHHHHHHHHHH--HhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccH-----HHHHH--------
Confidence 3344467778888888 999999999999999998865 45789999999999999998 56666
Q ss_pred hhHHHHHHcCCcHHHHHHHHHHHHcCCCCHH
Q 026773 177 KKLIRVSHFNRFEEGAEQFRIDVAQNPNDTE 207 (233)
Q Consensus 177 ~rG~al~~lGryeeAi~~f~kAL~lnP~d~e 207 (233)
+|..+++.|+|.+|+..|++.++..|.+..
T Consensus 233 -LA~~afe~g~~~~A~~~Wq~lL~~lp~~~~ 262 (287)
T COG4235 233 -LAFAAFEQGDYAEAAAAWQMLLDLLPADDP 262 (287)
T ss_pred -HHHHHHHcccHHHHHHHHHHHHhcCCCCCc
Confidence 899999999999999999999999987764
No 146
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=97.93 E-value=0.00038 Score=52.15 Aligned_cols=112 Identities=20% Similarity=0.248 Sum_probs=71.7
Q ss_pred chHHHHHHHHhcccCCCCCHHHHHHHHH-HHHHcCCHHHHHHHHHHHHhhCCC--CCCCccchhhhhhhhhhhhhhhHHH
Q 026773 105 PSVSGIWDALTGGNNNSREAVVAIRRGM-LLFRQGDVVGSVAEFDKAIELDPR--QKISGKGAYRFTISIVGIILKKLIR 181 (233)
Q Consensus 105 ~~a~~i~~~~i~~~l~P~~a~Ay~~RG~-a~~~lGdyeeAIadfdkAIeLdP~--~~~~~~~~y~~~~~~~~a~~~rG~a 181 (233)
..+...+..+. ..++.+.......+. ++...|++++|+..|+++++++|. ... .. +..++..
T Consensus 112 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~----~~---------~~~~~~~ 176 (291)
T COG0457 112 EEALELLEKAL--ALDPDPDLAEALLALGALYELGDYEEALELYEKALELDPELNELA----EA---------LLALGAL 176 (291)
T ss_pred HHHHHHHHHHH--cCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchH----HH---------HHHhhhH
Confidence 34555666555 555555555555555 788888888888888888887773 210 11 2235555
Q ss_pred HHHcCCcHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHh
Q 026773 182 VSHFNRFEEGAEQFRIDVAQNPN-DTEESIWCFLCEAQLYGVDEARNRFLE 231 (233)
Q Consensus 182 l~~lGryeeAi~~f~kAL~lnP~-d~e~~~~~~l~~a~Lg~~dEA~~~~l~ 231 (233)
+...+++++|+..+.++++..|+ ........+.+....+..++|...+..
T Consensus 177 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 227 (291)
T COG0457 177 LEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEK 227 (291)
T ss_pred HHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcccHHHHHHHHHH
Confidence 66777777777777777777777 455555566666666667777666544
No 147
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=97.92 E-value=1.6e-05 Score=48.47 Aligned_cols=32 Identities=19% Similarity=0.232 Sum_probs=28.6
Q ss_pred hhhhhHHHHHHcCCcHHHHHHHHHHHHcCCCC
Q 026773 174 IILKKLIRVSHFNRFEEGAEQFRIDVAQNPND 205 (233)
Q Consensus 174 a~~~rG~al~~lGryeeAi~~f~kAL~lnP~d 205 (233)
++..+|.+++.+|++++|+++|+++++++|+|
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 45579999999999999999999999999986
No 148
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=97.92 E-value=3.6e-05 Score=77.99 Aligned_cols=111 Identities=8% Similarity=0.065 Sum_probs=95.6
Q ss_pred cchHHHHHHHHhcccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHH
Q 026773 104 IPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVS 183 (233)
Q Consensus 104 ~~~a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~ 183 (233)
+.++...|.... +++|-....|+.+|.+..+++++++|+.+|.+++.++|++. ..|+ |...+|.
T Consensus 501 fs~~~~hle~sl--~~nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~~------eaWn--------Nls~ayi 564 (777)
T KOG1128|consen 501 FSEADKHLERSL--EINPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDNA------EAWN--------NLSTAYI 564 (777)
T ss_pred HHHHHHHHHHHh--hcCccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCch------hhhh--------hhhHHHH
Confidence 344556666666 89999999999999999999999999999999999999998 3454 7999999
Q ss_pred HcCCcHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 026773 184 HFNRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFL 230 (233)
Q Consensus 184 ~lGryeeAi~~f~kAL~lnP~d~e~~~~~~l~~a~Lg~~dEA~~~~l 230 (233)
.+|+-.+|-..+.+|++-|-.+...|-+.-+.....|.+++|...+-
T Consensus 565 ~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~ 611 (777)
T KOG1128|consen 565 RLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYH 611 (777)
T ss_pred HHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHH
Confidence 99999999999999999997776655555577779999999987764
No 149
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=97.89 E-value=5.9e-05 Score=74.23 Aligned_cols=110 Identities=12% Similarity=0.117 Sum_probs=87.0
Q ss_pred ccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHHHcCCcHHHHHHHH
Q 026773 117 GNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSHFNRFEEGAEQFR 196 (233)
Q Consensus 117 ~~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~lGryeeAi~~f~ 196 (233)
|+.+|.-+.++.++|.+|...|+|++|...+++|++|--... -.....+...+.+.+.++..++++++|+..+.
T Consensus 276 G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~------~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q 349 (508)
T KOG1840|consen 276 GEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLL------GASHPEVAAQLSELAAILQSMNEYEEAKKLLQ 349 (508)
T ss_pred CCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhh------ccChHHHHHHHHHHHHHHHHhcchhHHHHHHH
Confidence 468899999999999999999999999999999999965421 00111334456789999999999999999999
Q ss_pred HHHHcC-----CCC---HHHHHHHHHHHHHcCCHHHHHHHHHhh
Q 026773 197 IDVAQN-----PND---TEESIWCFLCEAQLYGVDEARNRFLEA 232 (233)
Q Consensus 197 kAL~ln-----P~d---~e~~~~~~l~~a~Lg~~dEA~~~~l~~ 232 (233)
+++++- +++ +..+..++-++.+.|+++||.+.+.++
T Consensus 350 ~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~a 393 (508)
T KOG1840|consen 350 KALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKA 393 (508)
T ss_pred HHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHH
Confidence 998862 233 334456677788999999999988764
No 150
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.87 E-value=0.00012 Score=71.14 Aligned_cols=96 Identities=17% Similarity=0.095 Sum_probs=82.1
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHHHcCCcHHHHHHHHHH
Q 026773 119 NNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSHFNRFEEGAEQFRID 198 (233)
Q Consensus 119 l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~lGryeeAi~~f~kA 198 (233)
++-..+.-|+.-|..++..++|+.|+..-+|+|+.||++. +.+. -+|.++..+||.++|+-.|+.|
T Consensus 295 ~~~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~-----~ali---------lKG~lL~~~~R~~~A~IaFR~A 360 (564)
T KOG1174|consen 295 KVKYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPRNH-----EALI---------LKGRLLIALERHTQAVIAFRTA 360 (564)
T ss_pred hhhcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcccc-----hHHH---------hccHHHHhccchHHHHHHHHHH
Confidence 3345667788888889999999999999999999999998 3333 4899999999999999999999
Q ss_pred HHcCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 026773 199 VAQNPNDTEESIWCFLCEAQLYGVDEARNR 228 (233)
Q Consensus 199 L~lnP~d~e~~~~~~l~~a~Lg~~dEA~~~ 228 (233)
+.+.|.+.+.|-.+.-|+...|+.+||...
T Consensus 361 q~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~ 390 (564)
T KOG1174|consen 361 QMLAPYRLEIYRGLFHSYLAQKRFKEANAL 390 (564)
T ss_pred HhcchhhHHHHHHHHHHHHhhchHHHHHHH
Confidence 999999998776677778888999998754
No 151
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=97.86 E-value=9.7e-05 Score=76.79 Aligned_cols=99 Identities=18% Similarity=0.022 Sum_probs=72.6
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHHHcCCcHHHHHHHHHHH
Q 026773 120 NSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSHFNRFEEGAEQFRIDV 199 (233)
Q Consensus 120 ~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~lGryeeAi~~f~kAL 199 (233)
.+--++.++++|.++..+|||++|...|-+|+..+|++.. -.++ .+|..+.+.|++++|+.+|++.+
T Consensus 303 ~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~----l~~~---------GlgQm~i~~~dle~s~~~fEkv~ 369 (1018)
T KOG2002|consen 303 KSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFV----LPLV---------GLGQMYIKRGDLEESKFCFEKVL 369 (1018)
T ss_pred hHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCcc----cccc---------chhHHHHHhchHHHHHHHHHHHH
Confidence 3455677888888888888888888888888888888741 1222 48888888888888888888888
Q ss_pred HcCCCCHHHHHHHHHHHHHcC----CHHHHHHHHHh
Q 026773 200 AQNPNDTEESIWCFLCEAQLY----GVDEARNRFLE 231 (233)
Q Consensus 200 ~lnP~d~e~~~~~~l~~a~Lg----~~dEA~~~~l~ 231 (233)
+.+|++.+..-.+|..++..+ ..|.|...+.+
T Consensus 370 k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K 405 (1018)
T KOG2002|consen 370 KQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGK 405 (1018)
T ss_pred HhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHH
Confidence 888888887666666666553 34555555443
No 152
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=97.84 E-value=0.001 Score=49.88 Aligned_cols=117 Identities=15% Similarity=0.100 Sum_probs=85.9
Q ss_pred ccCcchHHHHHHHHhcccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHH
Q 026773 101 RLFIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLI 180 (233)
Q Consensus 101 ~~~~~~a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~ 180 (233)
.+....+.............+.....+...|......+++++|++.+.+++..++... ..... .+.
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~---------~~~ 137 (291)
T COG0457 72 LGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPD-----LAEAL---------LAL 137 (291)
T ss_pred cccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcc-----hHHHH---------HHH
Confidence 3333444444444441126789999999999999999999999999999999998874 12222 455
Q ss_pred -HHHHcCCcHHHHHHHHHHHHcCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHh
Q 026773 181 -RVSHFNRFEEGAEQFRIDVAQNPN---DTEESIWCFLCEAQLYGVDEARNRFLE 231 (233)
Q Consensus 181 -al~~lGryeeAi~~f~kAL~lnP~---d~e~~~~~~l~~a~Lg~~dEA~~~~l~ 231 (233)
++...|++++|+..|.+++..+|. ...............++.++|...+.+
T Consensus 138 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 192 (291)
T COG0457 138 GALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEK 192 (291)
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHH
Confidence 899999999999999999998873 333333333335577889999887765
No 153
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=97.83 E-value=2.7e-05 Score=51.37 Aligned_cols=35 Identities=17% Similarity=0.174 Sum_probs=33.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCC
Q 026773 124 AVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQK 158 (233)
Q Consensus 124 a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~ 158 (233)
|++|..+|.++..+|++++|++.|+++++.+|+++
T Consensus 1 p~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~ 35 (44)
T PF13428_consen 1 PAAWLALARAYRRLGQPDEAERLLRRALALDPDDP 35 (44)
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCH
Confidence 47899999999999999999999999999999998
No 154
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=97.82 E-value=0.00064 Score=54.76 Aligned_cols=89 Identities=15% Similarity=0.087 Sum_probs=72.0
Q ss_pred HHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHHHcCCcHHHHHHHHHHHHcCCCCH---HHH
Q 026773 133 LLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSHFNRFEEGAEQFRIDVAQNPNDT---EES 209 (233)
Q Consensus 133 a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~lGryeeAi~~f~kAL~lnP~d~---e~~ 209 (233)
.....|+...+.+.+++.++-.|+.+ |.. .+.+.+|.+++..|++++|++.|++++...|++. ...
T Consensus 20 ~~~~~~~~~~~~~~~~~l~~~~~~s~------ya~-----~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~ 88 (145)
T PF09976_consen 20 QALQAGDPAKAEAAAEQLAKDYPSSP------YAA-----LAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLAR 88 (145)
T ss_pred HHHHCCCHHHHHHHHHHHHHHCCCCh------HHH-----HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHH
Confidence 33468999999999999999999886 222 3567799999999999999999999999887653 234
Q ss_pred HHHHHHHHHcCCHHHHHHHHHhh
Q 026773 210 IWCFLCEAQLYGVDEARNRFLEA 232 (233)
Q Consensus 210 ~~~~l~~a~Lg~~dEA~~~~l~~ 232 (233)
+.++.++..+|++++|...+.++
T Consensus 89 l~LA~~~~~~~~~d~Al~~L~~~ 111 (145)
T PF09976_consen 89 LRLARILLQQGQYDEALATLQQI 111 (145)
T ss_pred HHHHHHHHHcCCHHHHHHHHHhc
Confidence 55667788999999999998653
No 155
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=97.81 E-value=0.00018 Score=69.68 Aligned_cols=117 Identities=16% Similarity=0.157 Sum_probs=93.1
Q ss_pred cchHHHHHHHHhcccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHH
Q 026773 104 IPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVS 183 (233)
Q Consensus 104 ~~~a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~ 183 (233)
.+.++.+.+... +.-|+.+--.+..|.++...|+.++|++.|++|++...... ... .-.+.++|+.+.
T Consensus 249 ~~~a~~lL~~~~--~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~-----Ql~-----~l~~~El~w~~~ 316 (468)
T PF10300_consen 249 LEEAEELLEEML--KRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWK-----QLH-----HLCYFELAWCHM 316 (468)
T ss_pred HHHHHHHHHHHH--HhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHH-----hHH-----HHHHHHHHHHHH
Confidence 355667777666 77899999999999999999999999999999996554333 111 123456999999
Q ss_pred HcCCcHHHHHHHHHHHHcCCCCHHHHHH-HHHHHHHcCCH-------HHHHHHHHhh
Q 026773 184 HFNRFEEGAEQFRIDVAQNPNDTEESIW-CFLCEAQLYGV-------DEARNRFLEA 232 (233)
Q Consensus 184 ~lGryeeAi~~f~kAL~lnP~d~e~~~~-~~l~~a~Lg~~-------dEA~~~~l~~ 232 (233)
.+++|++|.+.|.+..+.+.-....|.+ .+.|+..+|+. ++|...|.+|
T Consensus 317 ~~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~v 373 (468)
T PF10300_consen 317 FQHDWEEAAEYFLRLLKESKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKV 373 (468)
T ss_pred HHchHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHH
Confidence 9999999999999999988765544433 56888899999 8888888765
No 156
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=97.78 E-value=9.1e-05 Score=75.45 Aligned_cols=93 Identities=11% Similarity=0.070 Sum_probs=80.7
Q ss_pred HHhccCcchHHHHHHHHhcccCCCCCHHHHHHHHHHHHHcCCHHHHHH--HHHHHHhhCCCCCCCccchhhhhhhhhhhh
Q 026773 98 FTRRLFIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVA--EFDKAIELDPRQKISGKGAYRFTISIVGII 175 (233)
Q Consensus 98 ~~r~~~~~~a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~lGdyeeAIa--dfdkAIeLdP~~~~~~~~~y~~~~~~~~a~ 175 (233)
+..++.+.+|...|..+. .+||++..+-..+|-++...|+..-|.+ -..-|+++||.++ ..|+
T Consensus 694 ~~~~~~~~EA~~af~~Al--~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~-----eaW~-------- 758 (799)
T KOG4162|consen 694 LEVKGQLEEAKEAFLVAL--ALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNH-----EAWY-------- 758 (799)
T ss_pred HHHHHhhHHHHHHHHHHH--hcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCH-----HHHH--------
Confidence 344445566777777777 8999999999999999999999888888 9999999999999 3433
Q ss_pred hhhHHHHHHcCCcHHHHHHHHHHHHcCCCCH
Q 026773 176 LKKLIRVSHFNRFEEGAEQFRIDVAQNPNDT 206 (233)
Q Consensus 176 ~~rG~al~~lGryeeAi~~f~kAL~lnP~d~ 206 (233)
++|.++..+|+.++|.++|..|+++++.+|
T Consensus 759 -~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~P 788 (799)
T KOG4162|consen 759 -YLGEVFKKLGDSKQAAECFQAALQLEESNP 788 (799)
T ss_pred -HHHHHHHHccchHHHHHHHHHHHhhccCCC
Confidence 599999999999999999999999999877
No 157
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=97.78 E-value=5e-05 Score=50.06 Aligned_cols=39 Identities=18% Similarity=0.138 Sum_probs=34.2
Q ss_pred hhhhhHHHHHHcCCcHHHHHHHHHHHHcCCCCHHHHHHH
Q 026773 174 IILKKLIRVSHFNRFEEGAEQFRIDVAQNPNDTEESIWC 212 (233)
Q Consensus 174 a~~~rG~al~~lGryeeAi~~f~kAL~lnP~d~e~~~~~ 212 (233)
+++.+|.++..+|++++|++.|+++++.+|+|++.+...
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~L 41 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRAL 41 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHh
Confidence 445799999999999999999999999999999865443
No 158
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=97.75 E-value=0.00025 Score=69.95 Aligned_cols=120 Identities=14% Similarity=0.108 Sum_probs=87.0
Q ss_pred hHHHHHHHHhcccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHHHc
Q 026773 106 SVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSHF 185 (233)
Q Consensus 106 ~a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~l 185 (233)
.+.+|+..+. ++-+|.-+..+.++|.+++.+|+|+||.+.|.+||++.-... |++.+.. .-.++++|..+..+
T Consensus 350 ~al~i~~~~~-g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~--~~~~~~~----~~~l~~la~~~~~~ 422 (508)
T KOG1840|consen 350 KALKIYLDAP-GEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELL--GKKDYGV----GKPLNQLAEAYEEL 422 (508)
T ss_pred HHHHHHHhhc-cccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcc--cCcChhh----hHHHHHHHHHHHHh
Confidence 3444444333 245567789999999999999999999999999999985433 1111211 12455699999999
Q ss_pred CCcHHHHHHHHHHHHcC----CCCHH---HHHHHHHHHHHcCCHHHHHHHHHhh
Q 026773 186 NRFEEGAEQFRIDVAQN----PNDTE---ESIWCFLCEAQLYGVDEARNRFLEA 232 (233)
Q Consensus 186 GryeeAi~~f~kAL~ln----P~d~e---~~~~~~l~~a~Lg~~dEA~~~~l~~ 232 (233)
+++++|.+.|++++.+. |+++. .+.+++..+..+|++++|...-+.|
T Consensus 423 k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~ 476 (508)
T KOG1840|consen 423 KKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKV 476 (508)
T ss_pred cccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 99999999999988763 44433 3455566678999999998876543
No 159
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=97.74 E-value=0.00012 Score=66.70 Aligned_cols=104 Identities=12% Similarity=0.029 Sum_probs=82.7
Q ss_pred CcchHHHHHHHHhcccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHH
Q 026773 103 FIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRV 182 (233)
Q Consensus 103 ~~~~a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al 182 (233)
..+.|.+.|..+| .++|+.+.-|.+|+.++++..+++....|..+|++++|+.. ...+. +|..+
T Consensus 25 ~y~~ai~~y~raI--~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~v-----k~h~f---------lg~~~ 88 (284)
T KOG4642|consen 25 RYDDAIDCYSRAI--CINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLV-----KAHYF---------LGQWL 88 (284)
T ss_pred hhchHHHHHHHHH--hcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHH-----HHHHH---------HHHHH
Confidence 4466777999999 89999999999999999999999999999999999999988 44454 89999
Q ss_pred HHcCCcHHHHHHHHHHHHcC---CCCHHHHHHHHHHHHHcCCH
Q 026773 183 SHFNRFEEGAEQFRIDVAQN---PNDTEESIWCFLCEAQLYGV 222 (233)
Q Consensus 183 ~~lGryeeAi~~f~kAL~ln---P~d~e~~~~~~l~~a~Lg~~ 222 (233)
.....|++||+.+.+|..+- |-....-++..+-.++-.++
T Consensus 89 l~s~~~~eaI~~Lqra~sl~r~~~~~~~~di~~~L~~ak~~~w 131 (284)
T KOG4642|consen 89 LQSKGYDEAIKVLQRAYSLLREQPFTFGDDIPKALRDAKKKRW 131 (284)
T ss_pred HhhccccHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCcc
Confidence 99999999999999995541 11111125555555544433
No 160
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.73 E-value=0.00032 Score=63.94 Aligned_cols=105 Identities=11% Similarity=0.168 Sum_probs=85.4
Q ss_pred ccccchhHHHhccCcchHHHHHHHHhcccCCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhh
Q 026773 90 YLQNRAPTFTRRLFIPSVSGIWDALTGGNNNSR---EAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYR 166 (233)
Q Consensus 90 ~~~~~~~~~~r~~~~~~a~~i~~~~i~~~l~P~---~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~ 166 (233)
.+++++..+.... ...|+.-|..-+ +.-|+ -++|++.+|.+++.+|||++|...|.++++-.|+.+ ..
T Consensus 144 ~Y~~A~~~~ksgd-y~~A~~~F~~fi--~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~-----KA- 214 (262)
T COG1729 144 LYNAALDLYKSGD-YAEAEQAFQAFI--KKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSP-----KA- 214 (262)
T ss_pred HHHHHHHHHHcCC-HHHHHHHHHHHH--HcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCC-----CC-
Confidence 4555655565555 445666666666 54554 579999999999999999999999999999999887 21
Q ss_pred hhhhhhhhhhhhHHHHHHcCCcHHHHHHHHHHHHcCCCCHHH
Q 026773 167 FTISIVGIILKKLIRVSHFNRFEEGAEQFRIDVAQNPNDTEE 208 (233)
Q Consensus 167 ~~~~~~~a~~~rG~al~~lGryeeAi~~f~kAL~lnP~d~e~ 208 (233)
-|+++.+|.++..+|+.++|...|+++++.=|+.+.+
T Consensus 215 -----pdallKlg~~~~~l~~~d~A~atl~qv~k~YP~t~aA 251 (262)
T COG1729 215 -----PDALLKLGVSLGRLGNTDEACATLQQVIKRYPGTDAA 251 (262)
T ss_pred -----hHHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCCHHH
Confidence 3577889999999999999999999999999987654
No 161
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=97.72 E-value=3.3e-05 Score=49.08 Aligned_cols=34 Identities=18% Similarity=0.058 Sum_probs=31.5
Q ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 026773 194 QFRIDVAQNPNDTEESIWCFLCEAQLYGVDEARN 227 (233)
Q Consensus 194 ~f~kAL~lnP~d~e~~~~~~l~~a~Lg~~dEA~~ 227 (233)
.|++||+++|+|++.+.+++.++..+|+.++|++
T Consensus 1 ~y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 1 CYKKAIELNPNNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred ChHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence 3789999999999999999999999999999973
No 162
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=97.72 E-value=0.00018 Score=72.31 Aligned_cols=101 Identities=8% Similarity=0.023 Sum_probs=68.8
Q ss_pred HHHHHhcccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHHHcCCcH
Q 026773 110 IWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSHFNRFE 189 (233)
Q Consensus 110 i~~~~i~~~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~lGrye 189 (233)
..++++ +..|.+.+.....|..+.-+|+-++|......+++.||... .-|. -.|+++-.-.+|+
T Consensus 29 ~~~~iL--~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~------vCwH--------v~gl~~R~dK~Y~ 92 (700)
T KOG1156|consen 29 LIKQIL--KKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSH------VCWH--------VLGLLQRSDKKYD 92 (700)
T ss_pred HHHHHH--HhCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccc------hhHH--------HHHHHHhhhhhHH
Confidence 334445 56777777777777777777777777777777777777766 2343 3677777777777
Q ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHH
Q 026773 190 EGAEQFRIDVAQNPNDTEESIWCFLCEAQLYGVDEAR 226 (233)
Q Consensus 190 eAi~~f~kAL~lnP~d~e~~~~~~l~~a~Lg~~dEA~ 226 (233)
||+++|+.|++++|+|.+.+.-..+...++++++...
T Consensus 93 eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~ 129 (700)
T KOG1156|consen 93 EAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYL 129 (700)
T ss_pred HHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHH
Confidence 7777777777777777764433444455566555443
No 163
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=97.70 E-value=0.00033 Score=66.15 Aligned_cols=115 Identities=16% Similarity=0.067 Sum_probs=68.9
Q ss_pred HhccCcchHHHHHHHHhcccCCCC-----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhh
Q 026773 99 TRRLFIPSVSGIWDALTGGNNNSR-----EAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVG 173 (233)
Q Consensus 99 ~r~~~~~~a~~i~~~~i~~~l~P~-----~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~ 173 (233)
+...-|.+|.+.-.+.. ++.|. -+.-|..++.......+.+.|+..+.||++-||+.. .....
T Consensus 152 Q~treW~KAId~A~~L~--k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cv-----RAsi~----- 219 (389)
T COG2956 152 QATREWEKAIDVAERLV--KLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQADKKCV-----RASII----- 219 (389)
T ss_pred HHhhHHHHHHHHHHHHH--HcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccce-----ehhhh-----
Confidence 33335666666655554 22222 244566666666666777777777777777777666 33222
Q ss_pred hhhhhHHHHHHcCCcHHHHHHHHHHHHcCCCCHHHHH-HHHHHHHHcCCHHHHHHHH
Q 026773 174 IILKKLIRVSHFNRFEEGAEQFRIDVAQNPNDTEESI-WCFLCEAQLYGVDEARNRF 229 (233)
Q Consensus 174 a~~~rG~al~~lGryeeAi~~f~kAL~lnP~d~e~~~-~~~l~~a~Lg~~dEA~~~~ 229 (233)
+|.+....|+|+.|++.++++++.||+.....+ -+.-|+.++|+.++....+
T Consensus 220 ----lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL 272 (389)
T COG2956 220 ----LGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFL 272 (389)
T ss_pred ----hhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 677777777777777777777777776543332 2345666777766665544
No 164
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=97.70 E-value=0.00019 Score=67.82 Aligned_cols=99 Identities=12% Similarity=0.111 Sum_probs=82.2
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHHHcCCcHHHHHHHHHHHHcC
Q 026773 123 EAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSHFNRFEEGAEQFRIDVAQN 202 (233)
Q Consensus 123 ~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~lGryeeAi~~f~kAL~ln 202 (233)
.|.-|-.-|+-++..++|..|+..|.+.|.-+-.++ ...- --|.||+.+.+.+|+|..|++|..+++.++
T Consensus 80 ~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~-----dlna-----vLY~NRAAa~~~l~NyRs~l~Dcs~al~~~ 149 (390)
T KOG0551|consen 80 QAENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADP-----DLNA-----VLYTNRAAAQLYLGNYRSALNDCSAALKLK 149 (390)
T ss_pred HHHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCc-----cHHH-----HHHhhHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 567788889999999999999999999999987666 2211 135689999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHh
Q 026773 203 PNDTEESIWCFLCEAQLYGVDEARNRFLE 231 (233)
Q Consensus 203 P~d~e~~~~~~l~~a~Lg~~dEA~~~~l~ 231 (233)
|.+..+++--+.|...|.++++|....++
T Consensus 150 P~h~Ka~~R~Akc~~eLe~~~~a~nw~ee 178 (390)
T KOG0551|consen 150 PTHLKAYIRGAKCLLELERFAEAVNWCEE 178 (390)
T ss_pred cchhhhhhhhhHHHHHHHHHHHHHHHHhh
Confidence 99998755556899999998887766543
No 165
>PRK10941 hypothetical protein; Provisional
Probab=97.69 E-value=0.00035 Score=63.67 Aligned_cols=75 Identities=11% Similarity=0.123 Sum_probs=65.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHHHcCCcHHHHHHHHHHHHcCCC
Q 026773 125 VVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSHFNRFEEGAEQFRIDVAQNPN 204 (233)
Q Consensus 125 ~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~lGryeeAi~~f~kAL~lnP~ 204 (233)
....++=.++...++++.|+++.++.+.++|+++ +-|. .||.+++++|.+..|++|++..++..|+
T Consensus 182 Rml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp------~e~R--------DRGll~~qL~c~~~A~~DL~~fl~~~P~ 247 (269)
T PRK10941 182 KLLDTLKAALMEEKQMELALRASEALLQFDPEDP------YEIR--------DRGLIYAQLDCEHVALSDLSYFVEQCPE 247 (269)
T ss_pred HHHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCH------HHHH--------HHHHHHHHcCCcHHHHHHHHHHHHhCCC
Confidence 3445666788999999999999999999999998 5566 6999999999999999999999999999
Q ss_pred CHHHHHHHH
Q 026773 205 DTEESIWCF 213 (233)
Q Consensus 205 d~e~~~~~~ 213 (233)
++.+.....
T Consensus 248 dp~a~~ik~ 256 (269)
T PRK10941 248 DPISEMIRA 256 (269)
T ss_pred chhHHHHHH
Confidence 998755543
No 166
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=97.68 E-value=0.00062 Score=58.31 Aligned_cols=118 Identities=13% Similarity=0.074 Sum_probs=80.3
Q ss_pred cCcchHHHHHHHHhcccCCC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhh
Q 026773 102 LFIPSVSGIWDALTGGNNNS---REAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKK 178 (233)
Q Consensus 102 ~~~~~a~~i~~~~i~~~l~P---~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~r 178 (233)
+-...|...+..++ ..-| --+.+.+.+|.+++..|+|++|+..|++.|+..|+++. . -.+++.+
T Consensus 19 g~y~~Ai~~f~~l~--~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~-----~------~~A~Y~~ 85 (203)
T PF13525_consen 19 GDYEEAIKLFEKLI--DRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPK-----A------DYALYML 85 (203)
T ss_dssp T-HHHHHHHHHHHH--HH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TT-----H------HHHHHHH
T ss_pred CCHHHHHHHHHHHH--HHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcc-----h------hhHHHHH
Confidence 34456777888887 4444 56689999999999999999999999999999999882 1 1244568
Q ss_pred HHHHHHcCC-----------cHHHHHHHHHHHHcCCCCHHHH---H--------------HHHHHHHHcCCHHHHHHHHH
Q 026773 179 LIRVSHFNR-----------FEEGAEQFRIDVAQNPNDTEES---I--------------WCFLCEAQLYGVDEARNRFL 230 (233)
Q Consensus 179 G~al~~lGr-----------yeeAi~~f~kAL~lnP~d~e~~---~--------------~~~l~~a~Lg~~dEA~~~~l 230 (233)
|.+++.+.+ ..+|+..|+..++.-|+.+... . ..+.-+.+.|.+..|..++.
T Consensus 86 g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~~~y~aA~~r~~ 165 (203)
T PF13525_consen 86 GLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELYIARFYYKRGKYKAAIIRFQ 165 (203)
T ss_dssp HHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-HHHHHHHHH
T ss_pred HHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHH
Confidence 888777643 4589999999999999864331 0 01112335677777777776
Q ss_pred hh
Q 026773 231 EA 232 (233)
Q Consensus 231 ~~ 232 (233)
.|
T Consensus 166 ~v 167 (203)
T PF13525_consen 166 YV 167 (203)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 167
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=97.64 E-value=0.00026 Score=64.61 Aligned_cols=122 Identities=15% Similarity=0.197 Sum_probs=83.0
Q ss_pred HHHHHHHhcccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCC-----------Cccch----hh-hh---
Q 026773 108 SGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKI-----------SGKGA----YR-FT--- 168 (233)
Q Consensus 108 ~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~-----------~~~~~----y~-~~--- 168 (233)
++-++.++.+--+-.+.+....+=.++..+++++.|.+.++++-+++.+... .|.+. ++ +.
T Consensus 115 ~~~~~~AL~~l~~~~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~ 194 (290)
T PF04733_consen 115 EGDYEEALKLLHKGGSLELLALAVQILLKMNRPDLAEKELKNMQQIDEDSILTQLAEAWVNLATGGEKYQDAFYIFEELS 194 (290)
T ss_dssp CCHHHHHHCCCTTTTCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHH
T ss_pred cCCHHHHHHHHHccCcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHH
Confidence 4555555532222267787777778888888888888888888888766432 01000 00 00
Q ss_pred ---hhhhhhhhhhHHHHHHcCCcHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 026773 169 ---ISIVGIILKKLIRVSHFNRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQLYGVDEARNRF 229 (233)
Q Consensus 169 ---~~~~~a~~~rG~al~~lGryeeAi~~f~kAL~lnP~d~e~~~~~~l~~a~Lg~~dEA~~~~ 229 (233)
..=..+.+..+.++..+|+|+||.+.+..+++.+|++++..++...|...+|...++..++
T Consensus 195 ~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~ 258 (290)
T PF04733_consen 195 DKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERY 258 (290)
T ss_dssp CCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHH
T ss_pred hccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHH
Confidence 0114567789999999999999999999999999999999888888888999884544443
No 168
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=97.63 E-value=0.00014 Score=76.16 Aligned_cols=116 Identities=14% Similarity=0.035 Sum_probs=94.5
Q ss_pred ccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccch-------hhhhh---------------hhhhh
Q 026773 117 GNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGA-------YRFTI---------------SIVGI 174 (233)
Q Consensus 117 ~~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~-------y~~~~---------------~~~~a 174 (233)
+.+||+.+.+|..+|.+|...-|...|-.+|+||.+|||.++..|+.. .-|.. .-...
T Consensus 485 lrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~n 564 (1238)
T KOG1127|consen 485 LRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKEN 564 (1238)
T ss_pred HhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhh
Confidence 389999999999999999888899999999999999999987411100 00110 11455
Q ss_pred hhhhHHHHHHcCCcHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhh
Q 026773 175 ILKKLIRVSHFNRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLEA 232 (233)
Q Consensus 175 ~~~rG~al~~lGryeeAi~~f~kAL~lnP~d~e~~~~~~l~~a~Lg~~dEA~~~~l~~ 232 (233)
+..||..+...+++..|+.+|.-|++.+|+|...|.-.|-++...|++..|...|.++
T Consensus 565 W~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kA 622 (1238)
T KOG1127|consen 565 WVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKA 622 (1238)
T ss_pred hhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhh
Confidence 6689999999999999999999999999999987666666777899999999998653
No 169
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=97.62 E-value=0.00067 Score=64.10 Aligned_cols=136 Identities=9% Similarity=0.024 Sum_probs=113.6
Q ss_pred ccccccccchhHHHhccCcchHHHHHHHHhcccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchh
Q 026773 86 PRGHYLQNRAPTFTRRLFIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAY 165 (233)
Q Consensus 86 ~~~h~~~~~~~~~~r~~~~~~a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y 165 (233)
.|.+-++.-..-|-+.++...|+.+|..+. ...---..|.-++-.+|-.-.++++||+.-++-..++|... .
T Consensus 105 qr~lAl~qL~~Dym~aGl~DRAE~~f~~L~--de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~-----~- 176 (389)
T COG2956 105 QRLLALQQLGRDYMAAGLLDRAEDIFNQLV--DEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTY-----R- 176 (389)
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHHh--cchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccc-----h-
Confidence 555666666778889999999999999987 33334457888999999999999999999999999999754 1
Q ss_pred hhhhhhhhhhhhhHHHHHHcCCcHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhh
Q 026773 166 RFTISIVGIILKKLIRVSHFNRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLEA 232 (233)
Q Consensus 166 ~~~~~~~~a~~~rG~al~~lGryeeAi~~f~kAL~lnP~d~e~~~~~~l~~a~Lg~~dEA~~~~l~~ 232 (233)
.-|.--|-.++..+....+.+.|+..+.+|++.||+...+.+.+|-.....|+++.|.+.++.|
T Consensus 177 ---~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v 240 (389)
T COG2956 177 ---VEIAQFYCELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERV 240 (389)
T ss_pred ---hHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHH
Confidence 1123345578888999999999999999999999999999999999999999999999988764
No 170
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.60 E-value=0.00014 Score=71.39 Aligned_cols=99 Identities=15% Similarity=0.137 Sum_probs=55.7
Q ss_pred cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHHHcCCcHHHHHHHHH
Q 026773 118 NNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSHFNRFEEGAEQFRI 197 (233)
Q Consensus 118 ~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~lGryeeAi~~f~k 197 (233)
.+|--|+.|..+.|.+-+..||+++|.+-|..|+.-|..-. . +++|.|+.+-.+|+.++|+++|-+
T Consensus 484 n~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~-----e---------alfniglt~e~~~~ldeald~f~k 549 (840)
T KOG2003|consen 484 NIDRYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCT-----E---------ALFNIGLTAEALGNLDEALDCFLK 549 (840)
T ss_pred cccccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHH-----H---------HHHHhcccHHHhcCHHHHHHHHHH
Confidence 55556666666666666666666666666666665554332 1 223356666666666666666655
Q ss_pred HHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 026773 198 DVAQNPNDTEESIWCFLCEAQLYGVDEARNRFL 230 (233)
Q Consensus 198 AL~lnP~d~e~~~~~~l~~a~Lg~~dEA~~~~l 230 (233)
.-.+=-++++.....+..+..+.+...|++.+.
T Consensus 550 lh~il~nn~evl~qianiye~led~aqaie~~~ 582 (840)
T KOG2003|consen 550 LHAILLNNAEVLVQIANIYELLEDPAQAIELLM 582 (840)
T ss_pred HHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHH
Confidence 544444555554445555555555555555543
No 171
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=97.59 E-value=0.0001 Score=41.31 Aligned_cols=33 Identities=27% Similarity=0.451 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 026773 125 VVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQ 157 (233)
Q Consensus 125 ~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~ 157 (233)
.+|..+|.++..+|++++|+..|+++++++|++
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~~ 34 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCC
Confidence 578999999999999999999999999999963
No 172
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=97.56 E-value=0.00018 Score=62.60 Aligned_cols=79 Identities=15% Similarity=0.079 Sum_probs=56.4
Q ss_pred HHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHHHcCC----------cHHHHHHHHHHHHcCCCCHHHH
Q 026773 140 VVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSHFNR----------FEEGAEQFRIDVAQNPNDTEES 209 (233)
Q Consensus 140 yeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~lGr----------yeeAi~~f~kAL~lnP~d~e~~ 209 (233)
|+.|.+.++.+...||.++ .... ++|.++..+.+ +++|++-|++||.+||+..+++
T Consensus 7 FE~ark~aea~y~~nP~Da-----dnL~---------~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAl 72 (186)
T PF06552_consen 7 FEHARKKAEAAYAKNPLDA-----DNLT---------NWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDAL 72 (186)
T ss_dssp HHHHHHHHHHHHHH-TT-H-----HHHH---------HHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHH
T ss_pred HHHHHHHHHHHHHhCcHhH-----HHHH---------HHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHH
Confidence 7899999999999999998 3333 48888887744 5788999999999999999987
Q ss_pred HHHHHHHHHc----CCHHHHHHHHHhh
Q 026773 210 IWCFLCEAQL----YGVDEARNRFLEA 232 (233)
Q Consensus 210 ~~~~l~~a~L----g~~dEA~~~~l~~ 232 (233)
...|.++..+ .+..+|...|.++
T Consensus 73 w~lGnA~ts~A~l~~d~~~A~~~F~kA 99 (186)
T PF06552_consen 73 WCLGNAYTSLAFLTPDTAEAEEYFEKA 99 (186)
T ss_dssp HHHHHHHHHHHHH---HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcCChHHHHHHHHHH
Confidence 7777776644 3445666666543
No 173
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.56 E-value=0.0012 Score=60.47 Aligned_cols=50 Identities=18% Similarity=0.256 Sum_probs=30.5
Q ss_pred HHHHHHHHhcccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCC
Q 026773 107 VSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQK 158 (233)
Q Consensus 107 a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~ 158 (233)
|-.+|+++. .--|++..+-...|+.+-..|.+++|++.|+.-++=||.+.
T Consensus 71 Aq~C~~~L~--~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~ 120 (289)
T KOG3060|consen 71 AQKCINQLR--DRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDDPTDT 120 (289)
T ss_pred HHHHHHHHH--HhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccCcchh
Confidence 444555544 22266666666666666666666666666666666666665
No 174
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=97.56 E-value=0.00081 Score=67.06 Aligned_cols=124 Identities=10% Similarity=-0.026 Sum_probs=81.4
Q ss_pred hhHHHhccCcchHHHHHHHHhcccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCCCCccchhhhhh---
Q 026773 95 APTFTRRLFIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIEL--DPRQKISGKGAYRFTI--- 169 (233)
Q Consensus 95 ~~~~~r~~~~~~a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeL--dP~~~~~~~~~y~~~~--- 169 (233)
+..+.+.+...+|..+|+... +.+..+|..+...+.+.|++++|++.|++..+. .|+.. .+...+
T Consensus 266 i~~y~k~g~~~~A~~vf~~m~-----~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~-----t~~~ll~a~ 335 (697)
T PLN03081 266 IDMYSKCGDIEDARCVFDGMP-----EKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQF-----TFSIMIRIF 335 (697)
T ss_pred HHHHHHCCCHHHHHHHHHhCC-----CCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHH-----HHHHHHHHH
Confidence 456677777777888887554 678899999999999999999999999998763 45433 111100
Q ss_pred ----------hh------------hhhhhhhHHHHHHcCCcHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 026773 170 ----------SI------------VGIILKKLIRVSHFNRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQLYGVDEARN 227 (233)
Q Consensus 170 ----------~~------------~~a~~~rG~al~~lGryeeAi~~f~kAL~lnP~d~e~~~~~~l~~a~Lg~~dEA~~ 227 (233)
.+ +.+++.+...|.+.|+.++|.+.|++..+ | |...|..+..++++.|+.++|.+
T Consensus 336 ~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~--~-d~~t~n~lI~~y~~~G~~~~A~~ 412 (697)
T PLN03081 336 SRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR--K-NLISWNALIAGYGNHGRGTKAVE 412 (697)
T ss_pred HhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC--C-CeeeHHHHHHHHHHcCCHHHHHH
Confidence 00 22344555666677777777777776543 3 23334444456667777777777
Q ss_pred HHHh
Q 026773 228 RFLE 231 (233)
Q Consensus 228 ~~l~ 231 (233)
.|.+
T Consensus 413 lf~~ 416 (697)
T PLN03081 413 MFER 416 (697)
T ss_pred HHHH
Confidence 7765
No 175
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=97.55 E-value=0.00079 Score=67.12 Aligned_cols=133 Identities=11% Similarity=-0.011 Sum_probs=81.2
Q ss_pred chhHHHhccCcchHHHHHHHHhcccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh---CCCCCCCccchhhhhh-
Q 026773 94 RAPTFTRRLFIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIEL---DPRQKISGKGAYRFTI- 169 (233)
Q Consensus 94 ~~~~~~r~~~~~~a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeL---dP~~~~~~~~~y~~~~- 169 (233)
-+..+.+.+...+|..++++.......|+ ...|...-.++...|+.++|.+.|++..+- .|+.. .|.-.+
T Consensus 397 lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd-~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~-----~y~~li~ 470 (697)
T PLN03081 397 LIAGYGNHGRGTKAVEMFERMIAEGVAPN-HVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAM-----HYACMIE 470 (697)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCC-HHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCcc-----chHhHHH
Confidence 34455555555556666665543233343 333444445555555555555555555432 23211 000000
Q ss_pred ---------------------hhhhhhhhhHHHHHHcCCcHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 026773 170 ---------------------SIVGIILKKLIRVSHFNRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQLYGVDEARNR 228 (233)
Q Consensus 170 ---------------------~~~~a~~~rG~al~~lGryeeAi~~f~kAL~lnP~d~e~~~~~~l~~a~Lg~~dEA~~~ 228 (233)
.-+.+|..+..++...|+.+.|...+++.++++|++...+..+..++++.|++++|...
T Consensus 471 ~l~r~G~~~eA~~~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v 550 (697)
T PLN03081 471 LLGREGLLDEAYAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKV 550 (697)
T ss_pred HHHhcCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHH
Confidence 00122345667778889999999999999999999888887788889999999999998
Q ss_pred HHhh
Q 026773 229 FLEA 232 (233)
Q Consensus 229 ~l~~ 232 (233)
+.+.
T Consensus 551 ~~~m 554 (697)
T PLN03081 551 VETL 554 (697)
T ss_pred HHHH
Confidence 8764
No 176
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=97.54 E-value=0.0014 Score=64.82 Aligned_cols=119 Identities=17% Similarity=0.187 Sum_probs=95.6
Q ss_pred HHHhccCcchHHHHHHHHhcccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhh
Q 026773 97 TFTRRLFIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIIL 176 (233)
Q Consensus 97 ~~~r~~~~~~a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~ 176 (233)
.+++.+-..+|...-+.+| +.+|..++.|..+|.++-..|++++|.+..+.|-+||+.+- |.+.
T Consensus 203 hyd~~g~~~~Al~~Id~aI--~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DR------yiNs-------- 266 (517)
T PF12569_consen 203 HYDYLGDYEKALEYIDKAI--EHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADR------YINS-------- 266 (517)
T ss_pred HHHHhCCHHHHHHHHHHHH--hcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhH------HHHH--------
Confidence 3555555678888888888 89999999999999999999999999999999999999775 5554
Q ss_pred hhHHHHHHcCCcHHHHHHHHHHHHcCCC------CHHHHHH----HHHHHHHcCCHHHHHHHHHhh
Q 026773 177 KKLIRVSHFNRFEEGAEQFRIDVAQNPN------DTEESIW----CFLCEAQLYGVDEARNRFLEA 232 (233)
Q Consensus 177 ~rG~al~~lGryeeAi~~f~kAL~lnP~------d~e~~~~----~~l~~a~Lg~~dEA~~~~l~~ 232 (233)
.-...+.+.|+.++|.+.+..-.+-+-+ +.+ ..| .+.|+.++|++-.|+.+|..|
T Consensus 267 K~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQ-c~Wf~~e~a~a~~r~~~~~~ALk~~~~v 331 (517)
T PF12569_consen 267 KCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQ-CMWFETECAEAYLRQGDYGLALKRFHAV 331 (517)
T ss_pred HHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHH-HHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 4567778889999999999877665521 111 133 356777899999999998764
No 177
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=97.53 E-value=0.00053 Score=69.06 Aligned_cols=102 Identities=13% Similarity=0.056 Sum_probs=87.2
Q ss_pred cccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHHHcCCcHHHHHHH
Q 026773 116 GGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSHFNRFEEGAEQF 195 (233)
Q Consensus 116 ~~~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~lGryeeAi~~f 195 (233)
|+..|+.+..-|..+|.++..-.+|++||.+|..|+.++|+|- -.|. +++....++++|+...+.-
T Consensus 67 glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~------qilr--------DlslLQ~QmRd~~~~~~tr 132 (700)
T KOG1156|consen 67 GLRNDLKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKDNL------QILR--------DLSLLQIQMRDYEGYLETR 132 (700)
T ss_pred HhccCcccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcH------HHHH--------HHHHHHHHHHhhhhHHHHH
Confidence 4489999999999999999999999999999999999999998 3344 6899999999999999999
Q ss_pred HHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHh
Q 026773 196 RIDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLE 231 (233)
Q Consensus 196 ~kAL~lnP~d~e~~~~~~l~~a~Lg~~dEA~~~~l~ 231 (233)
.+-++++|.....|+-.+.+.-.+|.+..|...+.+
T Consensus 133 ~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~il~e 168 (700)
T KOG1156|consen 133 NQLLQLRPSQRASWIGFAVAQHLLGEYKMALEILEE 168 (700)
T ss_pred HHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999998876544444444478999998877654
No 178
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.46 E-value=0.0048 Score=54.98 Aligned_cols=122 Identities=10% Similarity=0.138 Sum_probs=97.1
Q ss_pred hHHHhccCcchHHHHHHHHhcccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhh
Q 026773 96 PTFTRRLFIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGII 175 (233)
Q Consensus 96 ~~~~r~~~~~~a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~ 175 (233)
.++.+.+-..++...|.+++.+ +-..++.....++.+.+..+++.+|....|+..+-+|..-. + +-.
T Consensus 97 ~al~elGr~~EA~~hy~qalsG-~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~----p--------d~~ 163 (251)
T COG4700 97 NALAELGRYHEAVPHYQQALSG-IFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRS----P--------DGH 163 (251)
T ss_pred HHHHHhhhhhhhHHHHHHHhcc-ccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCC----C--------Cch
Confidence 3444555446777888887633 55688999999999999999999999999999999987541 1 112
Q ss_pred hhhHHHHHHcCCcHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHh
Q 026773 176 LKKLIRVSHFNRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLE 231 (233)
Q Consensus 176 ~~rG~al~~lGryeeAi~~f~kAL~lnP~d~e~~~~~~l~~a~Lg~~dEA~~~~l~ 231 (233)
+-.|.++...|++++|...|+.++.--|+ ++.....+--++++|+.+||...+.+
T Consensus 164 Ll~aR~laa~g~~a~Aesafe~a~~~ypg-~~ar~~Y~e~La~qgr~~ea~aq~~~ 218 (251)
T COG4700 164 LLFARTLAAQGKYADAESAFEVAISYYPG-PQARIYYAEMLAKQGRLREANAQYVA 218 (251)
T ss_pred HHHHHHHHhcCCchhHHHHHHHHHHhCCC-HHHHHHHHHHHHHhcchhHHHHHHHH
Confidence 34799999999999999999999999886 66667777778899999999887654
No 179
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.44 E-value=0.00078 Score=60.36 Aligned_cols=130 Identities=16% Similarity=0.144 Sum_probs=85.1
Q ss_pred cchhHHHhccCcchHHHHHHHHhcc---cCCC-CCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHhhCCCCCCCccchhhh
Q 026773 93 NRAPTFTRRLFIPSVSGIWDALTGG---NNNS-REAVVAIRRGMLLFRQ-GDVVGSVAEFDKAIELDPRQKISGKGAYRF 167 (233)
Q Consensus 93 ~~~~~~~r~~~~~~a~~i~~~~i~~---~l~P-~~a~Ay~~RG~a~~~l-GdyeeAIadfdkAIeLdP~~~~~~~~~y~~ 167 (233)
+++..+.+. -...|..++..++.. .-+| .-+..+...|.++... |++++|++.|++|+++--... ...
T Consensus 80 ~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-----~~~- 152 (282)
T PF14938_consen 80 EAANCYKKG-DPDEAIECYEKAIEIYREAGRFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEG-----SPH- 152 (282)
T ss_dssp HHHHHHHHT-THHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT------HH-
T ss_pred HHHHHHHhh-CHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC-----Chh-
Confidence 444444444 444566677766521 1122 2367889999999888 999999999999999843322 111
Q ss_pred hhhhhhhhhhhHHHHHHcCCcHHHHHHHHHHHHcCCCC------H-HHHHHHHHHHHHcCCHHHHHHHHHh
Q 026773 168 TISIVGIILKKLIRVSHFNRFEEGAEQFRIDVAQNPND------T-EESIWCFLCEAQLYGVDEARNRFLE 231 (233)
Q Consensus 168 ~~~~~~a~~~rG~al~~lGryeeAi~~f~kAL~lnP~d------~-e~~~~~~l~~a~Lg~~dEA~~~~l~ 231 (233)
...+.+.+.|.++..+|+|++|++.|++.....-++ . +.++.-.+|....||.-.|...+.+
T Consensus 153 --~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~ 221 (282)
T PF14938_consen 153 --SAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALER 221 (282)
T ss_dssp --HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred --hHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 124567789999999999999999999998853221 1 1123345777788999999888765
No 180
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.42 E-value=0.00098 Score=63.44 Aligned_cols=100 Identities=10% Similarity=-0.022 Sum_probs=69.8
Q ss_pred cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHHHcCCcHHHHHHHHH
Q 026773 118 NNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSHFNRFEEGAEQFRI 197 (233)
Q Consensus 118 ~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~lGryeeAi~~f~k 197 (233)
..-|.+..-....+.++-.++++++|++.|..++.++|.+.+ ..-. .|.-|++-|+.|-|+..|++
T Consensus 284 d~fP~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~~~~nvE-----aiAc---------ia~~yfY~~~PE~AlryYRR 349 (478)
T KOG1129|consen 284 DSFPFDVTYLLGQARIHEAMEQQEDALQLYKLVLKLHPINVE-----AIAC---------IAVGYFYDNNPEMALRYYRR 349 (478)
T ss_pred hcCCchhhhhhhhHHHHHHHHhHHHHHHHHHHHHhcCCccce-----eeee---------eeeccccCCChHHHHHHHHH
Confidence 666777776666667777889999999999999999998883 3333 56666666666666666666
Q ss_pred HHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHh
Q 026773 198 DVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLE 231 (233)
Q Consensus 198 AL~lnP~d~e~~~~~~l~~a~Lg~~dEA~~~~l~ 231 (233)
.+.+.-.++|-+.+.++|-..-+++|-+...|+.
T Consensus 350 iLqmG~~speLf~NigLCC~yaqQ~D~~L~sf~R 383 (478)
T KOG1129|consen 350 ILQMGAQSPELFCNIGLCCLYAQQIDLVLPSFQR 383 (478)
T ss_pred HHHhcCCChHHHhhHHHHHHhhcchhhhHHHHHH
Confidence 6666666666666666665555566666555553
No 181
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.41 E-value=0.0025 Score=58.51 Aligned_cols=84 Identities=11% Similarity=0.148 Sum_probs=64.6
Q ss_pred cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHHHcC---CcHHHHHH
Q 026773 118 NNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSHFN---RFEEGAEQ 194 (233)
Q Consensus 118 ~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~lG---ryeeAi~~ 194 (233)
+.=|+|.+||..++.+|+..|+|+.|+=+++..+=++|.++ .++.+ .|-++|-+| +++-|.+.
T Consensus 148 ~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~-----l~f~r---------lae~~Yt~gg~eN~~~arky 213 (289)
T KOG3060|consen 148 DKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNP-----LYFQR---------LAEVLYTQGGAENLELARKY 213 (289)
T ss_pred HHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcH-----HHHHH---------HHHHHHHHhhHHHHHHHHHH
Confidence 45578888888888888888999999889999988888888 56655 677776664 67778888
Q ss_pred HHHHHHcCCCCHHHHHHHHHH
Q 026773 195 FRIDVAQNPNDTEESIWCFLC 215 (233)
Q Consensus 195 f~kAL~lnP~d~e~~~~~~l~ 215 (233)
|.++++++|.+..+++-..+|
T Consensus 214 y~~alkl~~~~~ral~GI~lc 234 (289)
T KOG3060|consen 214 YERALKLNPKNLRALFGIYLC 234 (289)
T ss_pred HHHHHHhChHhHHHHHHHHHH
Confidence 888999888666544444444
No 182
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=97.39 E-value=0.0002 Score=43.86 Aligned_cols=33 Identities=18% Similarity=0.248 Sum_probs=29.3
Q ss_pred hhhhhhHHHHHHcCCcHHHHHHHHHHHHcCCCC
Q 026773 173 GIILKKLIRVSHFNRFEEGAEQFRIDVAQNPND 205 (233)
Q Consensus 173 ~a~~~rG~al~~lGryeeAi~~f~kAL~lnP~d 205 (233)
.++..+|.++..+|++++|++.|+++++++|++
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~n 34 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPDN 34 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 356679999999999999999999999999953
No 183
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=97.38 E-value=0.00047 Score=65.20 Aligned_cols=88 Identities=11% Similarity=0.137 Sum_probs=72.4
Q ss_pred chHHHHHHHHhccc-CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHH
Q 026773 105 PSVSGIWDALTGGN-NNSR-EAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRV 182 (233)
Q Consensus 105 ~~a~~i~~~~i~~~-l~P~-~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al 182 (233)
..|...|+.-+..+ -||+ ++.-|.||+.+.+.+|+|..||.|..+|+.++|.+. ..+|+ -+.++
T Consensus 98 k~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~-----Ka~~R---------~Akc~ 163 (390)
T KOG0551|consen 98 KDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHL-----KAYIR---------GAKCL 163 (390)
T ss_pred HHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchh-----hhhhh---------hhHHH
Confidence 35666777766322 4453 778899999999999999999999999999999998 45565 68999
Q ss_pred HHcCCcHHHHHHHHHHHHcCCCCH
Q 026773 183 SHFNRFEEGAEQFRIDVAQNPNDT 206 (233)
Q Consensus 183 ~~lGryeeAi~~f~kAL~lnP~d~ 206 (233)
+.+.++.+|+.+.+..+.++-+.-
T Consensus 164 ~eLe~~~~a~nw~ee~~~~d~e~K 187 (390)
T KOG0551|consen 164 LELERFAEAVNWCEEGLQIDDEAK 187 (390)
T ss_pred HHHHHHHHHHHHHhhhhhhhHHHH
Confidence 999999999999999888766543
No 184
>PLN03218 maturation of RBCL 1; Provisional
Probab=97.37 E-value=0.0032 Score=66.91 Aligned_cols=118 Identities=13% Similarity=0.030 Sum_probs=54.9
Q ss_pred HHHhccCcchHHHHHHHHhcccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh----hCCCCCCCccchhhhhhhhh
Q 026773 97 TFTRRLFIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIE----LDPRQKISGKGAYRFTISIV 172 (233)
Q Consensus 97 ~~~r~~~~~~a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIe----LdP~~~~~~~~~y~~~~~~~ 172 (233)
.+.+.+-..+|..+|+......+.|+ ..+|..+-.++.+.|++++|.+.|++..+ +.|+.. .
T Consensus 516 gy~k~G~~eeAl~lf~~M~~~Gv~PD-~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~v-------T------ 581 (1060)
T PLN03218 516 GCARAGQVAKAFGAYGIMRSKNVKPD-RVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHI-------T------ 581 (1060)
T ss_pred HHHHCcCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHH-------H------
Confidence 34444444455555555432223343 44555555555666666666666665544 234322 1
Q ss_pred hhhhhhHHHHHHcCCcHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 026773 173 GIILKKLIRVSHFNRFEEGAEQFRIDVAQNP-NDTEESIWCFLCEAQLYGVDEARNRFL 230 (233)
Q Consensus 173 ~a~~~rG~al~~lGryeeAi~~f~kAL~lnP-~d~e~~~~~~l~~a~Lg~~dEA~~~~l 230 (233)
|+.+-.++.+.|++++|.+.|++..+.+. .+...+.-...++++.|+.++|...|.
T Consensus 582 --ynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~ 638 (1060)
T PLN03218 582 --VGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYD 638 (1060)
T ss_pred --HHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 11233345555555555555555555432 122222222333445555555555544
No 185
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.34 E-value=0.0018 Score=63.16 Aligned_cols=114 Identities=14% Similarity=0.101 Sum_probs=91.6
Q ss_pred cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhh-----------------hh----hhhhh
Q 026773 118 NNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTI-----------------SI----VGIIL 176 (233)
Q Consensus 118 ~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~-----------------~~----~~a~~ 176 (233)
..-|+|..-...+|.++++.||+.+|+.-|+++.-+||.... |-+.|.+.- ++ ..=+.
T Consensus 226 ~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~-~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~ta~~wf 304 (564)
T KOG1174|consen 226 TTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVE-AMDLYAVLLGQEGGCEQDSALMDYLFAKVKYTASHWF 304 (564)
T ss_pred ccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhh-hHHHHHHHHHhccCHhhHHHHHHHHHhhhhcchhhhh
Confidence 456899999999999999999999999999999999997652 111121110 11 11233
Q ss_pred hhHHHHHHcCCcHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhh
Q 026773 177 KKLIRVSHFNRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLEA 232 (233)
Q Consensus 177 ~rG~al~~lGryeeAi~~f~kAL~lnP~d~e~~~~~~l~~a~Lg~~dEA~~~~l~~ 232 (233)
--|.+++...+|+.|+..-+++|+.||++.++++..|..+.+.|+.++|.=.|.++
T Consensus 305 V~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~A 360 (564)
T KOG1174|consen 305 VHAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTA 360 (564)
T ss_pred hhhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHH
Confidence 45778899999999999999999999999999999999999999999999888764
No 186
>PLN03077 Protein ECB2; Provisional
Probab=97.31 E-value=0.0026 Score=64.87 Aligned_cols=117 Identities=14% Similarity=-0.005 Sum_probs=73.6
Q ss_pred HHhccCcchHHHHHHHHhc-ccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhh
Q 026773 98 FTRRLFIPSVSGIWDALTG-GNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIIL 176 (233)
Q Consensus 98 ~~r~~~~~~a~~i~~~~i~-~~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~ 176 (233)
+.+.+...++..+++.... -.+.|+ .+.|..+..++.+.|++++|.+.+++. .+.|+. ..|. +
T Consensus 599 ~~~~g~v~ea~~~f~~M~~~~gi~P~-~~~y~~lv~~l~r~G~~~eA~~~~~~m-~~~pd~-------~~~~-----a-- 662 (857)
T PLN03077 599 CSRSGMVTQGLEYFHSMEEKYSITPN-LKHYACVVDLLGRAGKLTEAYNFINKM-PITPDP-------AVWG-----A-- 662 (857)
T ss_pred HhhcChHHHHHHHHHHHHHHhCCCCc-hHHHHHHHHHHHhCCCHHHHHHHHHHC-CCCCCH-------HHHH-----H--
Confidence 3344444444445544431 123332 355666666666666666666666653 344432 2333 1
Q ss_pred hhHHHHHHcCCcHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHh
Q 026773 177 KKLIRVSHFNRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLE 231 (233)
Q Consensus 177 ~rG~al~~lGryeeAi~~f~kAL~lnP~d~e~~~~~~l~~a~Lg~~dEA~~~~l~ 231 (233)
+-.++..-|+.+.|....++.++++|+++..+..+...++..|++++|......
T Consensus 663 -Ll~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~ 716 (857)
T PLN03077 663 -LLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKT 716 (857)
T ss_pred -HHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHHHHHH
Confidence 222445567788888888888999999998888888889999999999887654
No 187
>PLN03218 maturation of RBCL 1; Provisional
Probab=97.30 E-value=0.0042 Score=66.07 Aligned_cols=56 Identities=9% Similarity=-0.027 Sum_probs=31.5
Q ss_pred hhhhHHHHHHcCCcHHHHHHHHHHHH--cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHh
Q 026773 175 ILKKLIRVSHFNRFEEGAEQFRIDVA--QNPNDTEESIWCFLCEAQLYGVDEARNRFLE 231 (233)
Q Consensus 175 ~~~rG~al~~lGryeeAi~~f~kAL~--lnP~d~e~~~~~~l~~a~Lg~~dEA~~~~l~ 231 (233)
|+.+..++...|++++|++.|++..+ +.|+ ...|..+..++++.|++++|...|.+
T Consensus 687 ynsLI~ay~k~G~~eeA~~lf~eM~~~g~~Pd-vvtyN~LI~gy~k~G~~eeAlelf~e 744 (1060)
T PLN03218 687 YSSLMGACSNAKNWKKALELYEDIKSIKLRPT-VSTMNALITALCEGNQLPKALEVLSE 744 (1060)
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 44555666666666666666666544 2343 22233333455566677777666654
No 188
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.29 E-value=0.00084 Score=66.17 Aligned_cols=121 Identities=20% Similarity=0.143 Sum_probs=95.6
Q ss_pred hHHHhccCcchHHHHHHHHhcccCCC-CCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhh
Q 026773 96 PTFTRRLFIPSVSGIWDALTGGNNNS-REAVVAIRRGMLLFRQG--DVVGSVAEFDKAIELDPRQKISGKGAYRFTISIV 172 (233)
Q Consensus 96 ~~~~r~~~~~~a~~i~~~~i~~~l~P-~~a~Ay~~RG~a~~~lG--dyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~ 172 (233)
.++-|.+-...|.++..-.- +.|. .-..|-.++.+.++.+| ++..|-..-|.|+.+|--++ ...-
T Consensus 427 ~~~lk~~d~~~aieilkv~~--~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~-----~a~~----- 494 (840)
T KOG2003|consen 427 GELLKNGDIEGAIEILKVFE--KKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNA-----AALT----- 494 (840)
T ss_pred HHHHhccCHHHHHHHHHHHH--hccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCH-----HHhh-----
Confidence 45555555555555654433 2333 33455678888888854 89999999999999998887 3333
Q ss_pred hhhhhhHHHHHHcCCcHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhh
Q 026773 173 GIILKKLIRVSHFNRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLEA 232 (233)
Q Consensus 173 ~a~~~rG~al~~lGryeeAi~~f~kAL~lnP~d~e~~~~~~l~~a~Lg~~dEA~~~~l~~ 232 (233)
|.|.+-+..|+++.|.+.|..|+.-|..-.++.++.++....+|+.+||+++|++.
T Consensus 495 ----nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~kl 550 (840)
T KOG2003|consen 495 ----NKGNIAFANGDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKL 550 (840)
T ss_pred ----cCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHH
Confidence 59999999999999999999999988888888899999999999999999999874
No 189
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=97.28 E-value=0.0019 Score=58.68 Aligned_cols=85 Identities=11% Similarity=0.034 Sum_probs=71.9
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHHHcCCcHHHHHHHHHHHHc
Q 026773 122 REAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSHFNRFEEGAEQFRIDVAQ 201 (233)
Q Consensus 122 ~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~lGryeeAi~~f~kAL~l 201 (233)
..+.-|++-|....+.|++++|+..|++.....|..+ +.-+ +.+..+.++++.++|++|+...++-+++
T Consensus 32 ~p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~------~~~q-----a~l~l~yA~Yk~~~y~~A~~~~drFi~l 100 (254)
T COG4105 32 LPASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSP------YSEQ-----AQLDLAYAYYKNGEYDLALAYIDRFIRL 100 (254)
T ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCc------ccHH-----HHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 4678899999999999999999999999999999888 3333 5677999999999999999999999999
Q ss_pred CCCCHHH---HHHHHHHHH
Q 026773 202 NPNDTEE---SIWCFLCEA 217 (233)
Q Consensus 202 nP~d~e~---~~~~~l~~a 217 (233)
.|+++.. ++..+++..
T Consensus 101 yP~~~n~dY~~YlkgLs~~ 119 (254)
T COG4105 101 YPTHPNADYAYYLKGLSYF 119 (254)
T ss_pred CCCCCChhHHHHHHHHHHh
Confidence 9987654 334455533
No 190
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.26 E-value=0.0014 Score=58.77 Aligned_cols=133 Identities=12% Similarity=0.065 Sum_probs=85.2
Q ss_pred cccchhHHHhccCcchHHHHHHHHhcc--c-CCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhh
Q 026773 91 LQNRAPTFTRRLFIPSVSGIWDALTGG--N-NNS-REAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYR 166 (233)
Q Consensus 91 ~~~~~~~~~r~~~~~~a~~i~~~~i~~--~-l~P-~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~ 166 (233)
+..+...|...+-++.|...|..+... + -++ .-+.+|..-|.++.. +++++|+..|++|+++--... ..
T Consensus 38 y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~-~~~~~Ai~~~~~A~~~y~~~G-----~~- 110 (282)
T PF14938_consen 38 YEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKK-GDPDEAIECYEKAIEIYREAG-----RF- 110 (282)
T ss_dssp HHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH-TTHHHHHHHHHHHHHHHHHCT------H-
T ss_pred HHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh-hCHHHHHHHHHHHHHHHHhcC-----cH-
Confidence 334555566666667777777776421 1 122 234566666666544 499999999999999843322 00
Q ss_pred hhhhhhhhhhhhHHHHHHc-CCcHHHHHHHHHHHHcC--CCCHH----HHHHHHHHHHHcCCHHHHHHHHHhh
Q 026773 167 FTISIVGIILKKLIRVSHF-NRFEEGAEQFRIDVAQN--PNDTE----ESIWCFLCEAQLYGVDEARNRFLEA 232 (233)
Q Consensus 167 ~~~~~~~a~~~rG~al~~l-GryeeAi~~f~kAL~ln--P~d~e----~~~~~~l~~a~Lg~~dEA~~~~l~~ 232 (233)
......+.+.|.++... |++++|++.|.+|+++- .+.+. .....+.+..++|++++|...|.++
T Consensus 111 --~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~ 181 (282)
T PF14938_consen 111 --SQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEV 181 (282)
T ss_dssp --HHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 12345677899999998 99999999999999972 22222 1233455677999999999999864
No 191
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=97.25 E-value=0.00042 Score=38.70 Aligned_cols=32 Identities=13% Similarity=0.253 Sum_probs=29.0
Q ss_pred hhhhhHHHHHHcCCcHHHHHHHHHHHHcCCCC
Q 026773 174 IILKKLIRVSHFNRFEEGAEQFRIDVAQNPND 205 (233)
Q Consensus 174 a~~~rG~al~~lGryeeAi~~f~kAL~lnP~d 205 (233)
++.++|.++..+|++++|+..|+++++++|++
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~~ 34 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALELDPNN 34 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHccCCCC
Confidence 45679999999999999999999999999864
No 192
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.25 E-value=0.0029 Score=60.52 Aligned_cols=117 Identities=13% Similarity=0.092 Sum_probs=97.9
Q ss_pred cCcchHHHHHHHHhcccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-CCCCCCCccchhhhhhhhhhhhhhhHH
Q 026773 102 LFIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIEL-DPRQKISGKGAYRFTISIVGIILKKLI 180 (233)
Q Consensus 102 ~~~~~a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeL-dP~~~~~~~~~y~~~~~~~~a~~~rG~ 180 (233)
+-.++|...|++++ +--|.+--++..--.+++..|+.++-...++|.|-. ||+.| -|.+.. | ..+.
T Consensus 117 g~~h~a~~~wdklL--~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp-----~~sYv~---G---myaF 183 (491)
T KOG2610|consen 117 GKHHEAAIEWDKLL--DDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLP-----CYSYVH---G---MYAF 183 (491)
T ss_pred ccccHHHHHHHHHH--HhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCc-----HHHHHH---H---HHHh
Confidence 35577888999999 888999999999999999999999999999999988 99887 454430 0 1345
Q ss_pred HHHHcCCcHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHh
Q 026773 181 RVSHFNRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLE 231 (233)
Q Consensus 181 al~~lGryeeAi~~f~kAL~lnP~d~e~~~~~~l~~a~Lg~~dEA~~~~l~ 231 (233)
-+...|-|++|.+..++++++||.|..+..-...++..-|+.+|+.+-+.+
T Consensus 184 gL~E~g~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ 234 (491)
T KOG2610|consen 184 GLEECGIYDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYK 234 (491)
T ss_pred hHHHhccchhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHh
Confidence 577889999999999999999999987766666667788999999887765
No 193
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.21 E-value=0.0019 Score=60.98 Aligned_cols=109 Identities=11% Similarity=0.071 Sum_probs=93.7
Q ss_pred cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhh------------h----------------
Q 026773 118 NNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFT------------I---------------- 169 (233)
Q Consensus 118 ~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~------------~---------------- 169 (233)
+-+|++-.++..+|.+|++..+|++|-.+|++--.+-|... .|... +
T Consensus 38 Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~-----qYrlY~AQSLY~A~i~ADALrV~~~~~D~~~L~~ 112 (459)
T KOG4340|consen 38 ERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELE-----QYRLYQAQSLYKACIYADALRVAFLLLDNPALHS 112 (459)
T ss_pred hcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHH-----HHHHHHHHHHHHhcccHHHHHHHHHhcCCHHHHH
Confidence 68899999999999999999999999999999999999865 22211 0
Q ss_pred -----------------------------hhhhhhhhhHHHHHHcCCcHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcC
Q 026773 170 -----------------------------SIVGIILKKLIRVSHFNRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQLY 220 (233)
Q Consensus 170 -----------------------------~~~~a~~~rG~al~~lGryeeAi~~f~kAL~lnP~d~e~~~~~~l~~a~Lg 220 (233)
+-.+.+++.|-++++.|+||+|++-|..|++..--++-..++.++|..+.+
T Consensus 113 ~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpllAYniALaHy~~~ 192 (459)
T KOG4340|consen 113 RVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLALAHYSSR 192 (459)
T ss_pred HHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHHHHHhhcCCCchhHHHHHHHHHhhh
Confidence 016778899999999999999999999999998888877788889999999
Q ss_pred CHHHHHHHHHh
Q 026773 221 GVDEARNRFLE 231 (233)
Q Consensus 221 ~~dEA~~~~l~ 231 (233)
+++.|.+...|
T Consensus 193 qyasALk~iSE 203 (459)
T KOG4340|consen 193 QYASALKHISE 203 (459)
T ss_pred hHHHHHHHHHH
Confidence 99999987654
No 194
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=97.18 E-value=0.0014 Score=59.83 Aligned_cols=88 Identities=14% Similarity=0.167 Sum_probs=66.1
Q ss_pred cchHHHHHHHHhcccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHH
Q 026773 104 IPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVS 183 (233)
Q Consensus 104 ~~~a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~ 183 (233)
..+|--+|+++. +.-|.++..+..++.++..+|+|++|.+...+|++.||+++ .. +.|+..+..
T Consensus 183 ~~~A~y~f~El~--~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~-----d~---------LaNliv~~~ 246 (290)
T PF04733_consen 183 YQDAFYIFEELS--DKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDP-----DT---------LANLIVCSL 246 (290)
T ss_dssp CCHHHHHHHHHH--CCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHH-----HH---------HHHHHHHHH
T ss_pred HHHHHHHHHHHH--hccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCH-----HH---------HHHHHHHHH
Confidence 344555555554 45578899999999999999999999999999999999988 33 346999999
Q ss_pred HcCCc-HHHHHHHHHHHHcCCCCHH
Q 026773 184 HFNRF-EEGAEQFRIDVAQNPNDTE 207 (233)
Q Consensus 184 ~lGry-eeAi~~f~kAL~lnP~d~e 207 (233)
.+|+. +++-+...+.-..+|+++.
T Consensus 247 ~~gk~~~~~~~~l~qL~~~~p~h~~ 271 (290)
T PF04733_consen 247 HLGKPTEAAERYLSQLKQSNPNHPL 271 (290)
T ss_dssp HTT-TCHHHHHHHHHCHHHTTTSHH
T ss_pred HhCCChhHHHHHHHHHHHhCCCChH
Confidence 99999 5555667777778999874
No 195
>PLN03077 Protein ECB2; Provisional
Probab=97.17 E-value=0.0062 Score=62.17 Aligned_cols=115 Identities=15% Similarity=0.074 Sum_probs=85.0
Q ss_pred hhHHHhccCcchHHHHHHHHhcccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCCCCCccchhhhhhhhh
Q 026773 95 APTFTRRLFIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIE--LDPRQKISGKGAYRFTISIV 172 (233)
Q Consensus 95 ~~~~~r~~~~~~a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIe--LdP~~~~~~~~~y~~~~~~~ 172 (233)
+..+.|.+-..+|..+++.. +.|..+|..+...+...|+.++|++.|++.++ +.|+.. .+..
T Consensus 531 i~~y~k~G~~~~A~~~f~~~------~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~------T~~~---- 594 (857)
T PLN03077 531 LDLYVRCGRMNYAWNQFNSH------EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEV------TFIS---- 594 (857)
T ss_pred HHHHHHcCCHHHHHHHHHhc------CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcc------cHHH----
Confidence 35566666666666666543 57889999999999999999999999999887 467655 2222
Q ss_pred hhhhhhHHHHHHcCCcHHHHHHHHHHHHc---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHh
Q 026773 173 GIILKKLIRVSHFNRFEEGAEQFRIDVAQ---NPNDTEESIWCFLCEAQLYGVDEARNRFLE 231 (233)
Q Consensus 173 ~a~~~rG~al~~lGryeeAi~~f~kAL~l---nP~d~e~~~~~~l~~a~Lg~~dEA~~~~l~ 231 (233)
.-.++.+.|+.++|.+.|+...+. .|+ .+.+....-++++.|+.+||.+.+.+
T Consensus 595 -----ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~-~~~y~~lv~~l~r~G~~~eA~~~~~~ 650 (857)
T PLN03077 595 -----LLCACSRSGMVTQGLEYFHSMEEKYSITPN-LKHYACVVDLLGRAGKLTEAYNFINK 650 (857)
T ss_pred -----HHHHHhhcChHHHHHHHHHHHHHHhCCCCc-hHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 445677889999999999988744 443 34444455677788999999888765
No 196
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.16 E-value=0.0029 Score=63.42 Aligned_cols=108 Identities=11% Similarity=0.033 Sum_probs=80.1
Q ss_pred cchHHHHHHHHhcccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHH
Q 026773 104 IPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVS 183 (233)
Q Consensus 104 ~~~a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~ 183 (233)
..+|....++++ ...|++..+..-.=.++.++++|++|+.+.++-..++-.+. +++ .++.+.|
T Consensus 28 ~e~a~k~~~Kil--~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~~------~~f---------EKAYc~Y 90 (652)
T KOG2376|consen 28 YEEAVKTANKIL--SIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVINS------FFF---------EKAYCEY 90 (652)
T ss_pred HHHHHHHHHHHH--hcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcch------hhH---------HHHHHHH
Confidence 356777778888 67799999999999999999999999944443333232222 223 3889999
Q ss_pred HcCCcHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHh
Q 026773 184 HFNRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLE 231 (233)
Q Consensus 184 ~lGryeeAi~~f~kAL~lnP~d~e~~~~~~l~~a~Lg~~dEA~~~~l~ 231 (233)
++++.++|+++++ -+++.+.-....++-...++|+++||.+.++.
T Consensus 91 rlnk~Dealk~~~---~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~ 135 (652)
T KOG2376|consen 91 RLNKLDEALKTLK---GLDRLDDKLLELRAQVLYRLERYDEALDIYQH 135 (652)
T ss_pred HcccHHHHHHHHh---cccccchHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 9999999999998 45666555556667777888999999888764
No 197
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=97.13 E-value=0.0072 Score=63.38 Aligned_cols=120 Identities=11% Similarity=0.104 Sum_probs=85.8
Q ss_pred hhHHHhccCcchHHHHHHHHhcccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhh------
Q 026773 95 APTFTRRLFIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFT------ 168 (233)
Q Consensus 95 ~~~~~r~~~~~~a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~------ 168 (233)
+..+.+-+...++.++|++++ ++||+|+.+..+.|..+... |.++|+..+.+|++..=+.-.-.+-.-+|.
T Consensus 123 A~~Ydk~g~~~ka~~~yer~L--~~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~~i~~kq~~~~~e~W~k~~~~~ 199 (906)
T PRK14720 123 AEAYAKLNENKKLKGVWERLV--KADRDNPEIVKKLATSYEEE-DKEKAITYLKKAIYRFIKKKQYVGIEEIWSKLVHYN 199 (906)
T ss_pred HHHHHHcCChHHHHHHHHHHH--hcCcccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHhcC
Confidence 455666677788999999999 99999999999999999999 999999999999876321110000011222
Q ss_pred ---------h-----------hhhhhhhhhHHHHHHcCCcHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Q 026773 169 ---------I-----------SIVGIILKKLIRVSHFNRFEEGAEQFRIDVAQNPNDTEESIWCFLCEA 217 (233)
Q Consensus 169 ---------~-----------~~~~a~~~rG~al~~lGryeeAi~~f~kAL~lnP~d~e~~~~~~l~~a 217 (233)
+ .+++-+...=.-|-..++|++++..+..+++++|.|-.+..-...|+.
T Consensus 200 ~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 200 SDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYK 268 (906)
T ss_pred cccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHH
Confidence 0 112233333366778899999999999999999998766555555544
No 198
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.13 E-value=0.0046 Score=56.99 Aligned_cols=105 Identities=15% Similarity=0.169 Sum_probs=83.7
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--------CCCCCCCccchhhhhh-hhhhhhhhhHHHHHHcCCcHHHHH
Q 026773 123 EAVVAIRRGMLLFRQGDVVGSVAEFDKAIEL--------DPRQKISGKGAYRFTI-SIVGIILKKLIRVSHFNRFEEGAE 193 (233)
Q Consensus 123 ~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeL--------dP~~~~~~~~~y~~~~-~~~~a~~~rG~al~~lGryeeAi~ 193 (233)
...+...+|+-++.+|+|.||+..|..||.. .|..+ ...-.+ -+.--++|....+...|+|-|+++
T Consensus 177 av~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~-----eW~eLdk~~tpLllNy~QC~L~~~e~yevle 251 (329)
T KOG0545|consen 177 AVPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEP-----EWLELDKMITPLLLNYCQCLLKKEEYYEVLE 251 (329)
T ss_pred hhHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCCh-----HHHHHHHhhhHHHHhHHHHHhhHHHHHHHHH
Confidence 4578899999999999999999999999864 57766 211111 223456678888999999999999
Q ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhh
Q 026773 194 QFRIDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLEA 232 (233)
Q Consensus 194 ~f~kAL~lnP~d~e~~~~~~l~~a~Lg~~dEA~~~~l~~ 232 (233)
..+..++.+|.+..+++-++-+.+..=+.+||.+.|..|
T Consensus 252 h~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~v 290 (329)
T KOG0545|consen 252 HCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKV 290 (329)
T ss_pred HHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHH
Confidence 999999999999888888877777777888888888764
No 199
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=97.06 E-value=0.0011 Score=39.83 Aligned_cols=33 Identities=18% Similarity=0.268 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 026773 125 VVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQ 157 (233)
Q Consensus 125 ~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~ 157 (233)
+|++++|.++..+|++++|++.|++.++..|+.
T Consensus 1 ~a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~s 33 (33)
T PF13174_consen 1 DALYRLARCYYKLGDYDEAIEYFQRLIKRYPDS 33 (33)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHHHHSTTS
T ss_pred CHHHHHHHHHHHccCHHHHHHHHHHHHHHCcCC
Confidence 578999999999999999999999999999974
No 200
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.00 E-value=0.0034 Score=60.18 Aligned_cols=79 Identities=11% Similarity=0.101 Sum_probs=68.1
Q ss_pred chHHHHHHHHhcccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHHH
Q 026773 105 PSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSH 184 (233)
Q Consensus 105 ~~a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~ 184 (233)
.+|..+..+++ +.+|++++.+...+..+...|+++.|++...+|+++.|... ..|. .++.+|..
T Consensus 217 ~~AI~ll~~aL--~~~p~d~~LL~~Qa~fLl~k~~~~lAL~iAk~av~lsP~~f-----~~W~---------~La~~Yi~ 280 (395)
T PF09295_consen 217 VEAIRLLNEAL--KENPQDSELLNLQAEFLLSKKKYELALEIAKKAVELSPSEF-----ETWY---------QLAECYIQ 280 (395)
T ss_pred HHHHHHHHHHH--HhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhH-----HHHH---------HHHHHHHh
Confidence 35556666666 88999999999999999999999999999999999999988 3444 49999999
Q ss_pred cCCcHHHHHHHHHHH
Q 026773 185 FNRFEEGAEQFRIDV 199 (233)
Q Consensus 185 lGryeeAi~~f~kAL 199 (233)
+|++++|+...+-+-
T Consensus 281 ~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 281 LGDFENALLALNSCP 295 (395)
T ss_pred cCCHHHHHHHHhcCc
Confidence 999999998887543
No 201
>PRK04841 transcriptional regulator MalT; Provisional
Probab=96.97 E-value=0.011 Score=59.89 Aligned_cols=118 Identities=8% Similarity=-0.019 Sum_probs=81.1
Q ss_pred chHHHHHHHHhcccCCCC-C----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhH
Q 026773 105 PSVSGIWDALTGGNNNSR-E----AVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKL 179 (233)
Q Consensus 105 ~~a~~i~~~~i~~~l~P~-~----a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG 179 (233)
..+......++ +..|. + ..++..+|.++...|++++|...+++++++..... .... .+.+..++|
T Consensus 469 ~~A~~~~~~al--~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g-----~~~~---~~~~~~~la 538 (903)
T PRK04841 469 EEAERLAELAL--AELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHD-----VYHY---ALWSLLQQS 538 (903)
T ss_pred HHHHHHHHHHH--hcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhc-----chHH---HHHHHHHHH
Confidence 44555555555 32222 2 24678899999999999999999999999866543 1111 123456789
Q ss_pred HHHHHcCCcHHHHHHHHHHHHcCCC-----CH-H--HHHHHHHHHHHcCCHHHHHHHHHhh
Q 026773 180 IRVSHFNRFEEGAEQFRIDVAQNPN-----DT-E--ESIWCFLCEAQLYGVDEARNRFLEA 232 (233)
Q Consensus 180 ~al~~lGryeeAi~~f~kAL~lnP~-----d~-e--~~~~~~l~~a~Lg~~dEA~~~~l~~ 232 (233)
.+++..|++++|.+.+++++++-.. .+ . .+...+.+....|++++|...+.++
T Consensus 539 ~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~a 599 (903)
T PRK04841 539 EILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKG 599 (903)
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHh
Confidence 9999999999999999999886321 11 1 1223445566779999998877653
No 202
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.91 E-value=0.0067 Score=56.45 Aligned_cols=142 Identities=15% Similarity=0.156 Sum_probs=102.0
Q ss_pred ccccccccccccccchhHHHhcc----CcchHHHHHHH----------------------------HhcccCC-CCCHHH
Q 026773 80 NSLFSTPRGHYLQNRAPTFTRRL----FIPSVSGIWDA----------------------------LTGGNNN-SREAVV 126 (233)
Q Consensus 80 n~~~~~~~~h~~~~~~~~~~r~~----~~~~a~~i~~~----------------------------~i~~~l~-P~~a~A 126 (233)
||--+..|+|.+++.+...-+.. ..++....|.+ ++ +.+ |.++.-
T Consensus 137 npqesLdRl~~L~~~V~~ii~~~e~~~~~ESsv~lW~KRl~~Vmy~~~~~llG~kEy~iS~d~~~~vi--~~~~e~~p~L 214 (366)
T KOG2796|consen 137 NPQESLDRLHKLKTVVSKILANLEQGLAEESSIRLWRKRLGRVMYSMANCLLGMKEYVLSVDAYHSVI--KYYPEQEPQL 214 (366)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHHhcchhhhhhHHHHHHHH--HhCCcccHHH
Confidence 44445567777776665443332 33455677776 23 334 788888
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHHHcCCcHHHHHHHHHHHHcCCCCH
Q 026773 127 AIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSHFNRFEEGAEQFRIDVAQNPNDT 206 (233)
Q Consensus 127 y~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~lGryeeAi~~f~kAL~lnP~d~ 206 (233)
...+|.+..+.||.+.|-..|++.-+-+-.-. .... ......+...++.-.++|.+|...|++.++.||.++
T Consensus 215 ~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~-----~~q~---~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~ 286 (366)
T KOG2796|consen 215 LSGLGRISMQIGDIKTAEKYFQDVEKVTQKLD-----GLQG---KIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNA 286 (366)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHHHhhhh-----ccch---hHHHHhhhhhheecccchHHHHHHHhhccccCCCch
Confidence 88999999999999999999995543222111 0000 012334678888888999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHh
Q 026773 207 EESIWCFLCEAQLYGVDEARNRFLE 231 (233)
Q Consensus 207 e~~~~~~l~~a~Lg~~dEA~~~~l~ 231 (233)
.+..+.++|+..+|+..+|...++.
T Consensus 287 ~a~NnKALcllYlg~l~DAiK~~e~ 311 (366)
T KOG2796|consen 287 VANNNKALCLLYLGKLKDALKQLEA 311 (366)
T ss_pred hhhchHHHHHHHHHHHHHHHHHHHH
Confidence 8878889999999999999988764
No 203
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=96.89 E-value=0.0017 Score=41.19 Aligned_cols=30 Identities=20% Similarity=0.323 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 026773 126 VAIRRGMLLFRQGDVVGSVAEFDKAIELDP 155 (233)
Q Consensus 126 Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP 155 (233)
+|.++|.++..+|+|++|++.|++|+++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l~~ 30 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALALAR 30 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHhcc
Confidence 588999999999999999999999776543
No 204
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=96.74 E-value=0.023 Score=58.21 Aligned_cols=97 Identities=14% Similarity=0.042 Sum_probs=70.9
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHHHcCCcHHHHHHHHHHHHcC
Q 026773 123 EAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSHFNRFEEGAEQFRIDVAQN 202 (233)
Q Consensus 123 ~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~lGryeeAi~~f~kAL~ln 202 (233)
...+|+.-....-.+|+.++|+...+.+|+.-|++. ..+. .+|.++-.+++.+.|.+.|...++.-
T Consensus 650 TeRv~mKs~~~er~ld~~eeA~rllEe~lk~fp~f~-----Kl~l---------mlGQi~e~~~~ie~aR~aY~~G~k~c 715 (913)
T KOG0495|consen 650 TERVWMKSANLERYLDNVEEALRLLEEALKSFPDFH-----KLWL---------MLGQIEEQMENIEMAREAYLQGTKKC 715 (913)
T ss_pred cchhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCchH-----HHHH---------HHhHHHHHHHHHHHHHHHHHhccccC
Confidence 345566666666677888888888888888888777 3333 48888888888888888888888888
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHhhC
Q 026773 203 PNDTEESIWCFLCEAQLYGVDEARNRFLEAR 233 (233)
Q Consensus 203 P~d~e~~~~~~l~~a~Lg~~dEA~~~~l~~~ 233 (233)
|+-+.-|+.+.-.+.+.|+.-.|+..+..+|
T Consensus 716 P~~ipLWllLakleEk~~~~~rAR~ildrar 746 (913)
T KOG0495|consen 716 PNSIPLWLLLAKLEEKDGQLVRARSILDRAR 746 (913)
T ss_pred CCCchHHHHHHHHHHHhcchhhHHHHHHHHH
Confidence 8877655555555667778888888777654
No 205
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=96.65 E-value=0.015 Score=51.91 Aligned_cols=99 Identities=13% Similarity=0.056 Sum_probs=79.7
Q ss_pred cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-CCCCCCCccchhhhhhhhhhhhhhhHHHHHHcCCcHHHHHHHH
Q 026773 118 NNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIEL-DPRQKISGKGAYRFTISIVGIILKKLIRVSHFNRFEEGAEQFR 196 (233)
Q Consensus 118 ~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeL-dP~~~~~~~~~y~~~~~~~~a~~~rG~al~~lGryeeAi~~f~ 196 (233)
+..|...+ .+.+|.++..+|++.||...|++|+.= -.+++ .. ++.++.+.+.++++.+|...++
T Consensus 84 ~~ApTvqn-r~rLa~al~elGr~~EA~~hy~qalsG~fA~d~-----a~---------lLglA~Aqfa~~~~A~a~~tLe 148 (251)
T COG4700 84 AIAPTVQN-RYRLANALAELGRYHEAVPHYQQALSGIFAHDA-----AM---------LLGLAQAQFAIQEFAAAQQTLE 148 (251)
T ss_pred hhchhHHH-HHHHHHHHHHhhhhhhhHHHHHHHhccccCCCH-----HH---------HHHHHHHHHhhccHHHHHHHHH
Confidence 45676655 468999999999999999999999862 22222 22 3468999999999999999999
Q ss_pred HHHHcCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHh
Q 026773 197 IDVAQNPN--DTEESIWCFLCEAQLYGVDEARNRFLE 231 (233)
Q Consensus 197 kAL~lnP~--d~e~~~~~~l~~a~Lg~~dEA~~~~l~ 231 (233)
+..+-+|. .|+..+..+.+++.+|++++|...|+-
T Consensus 149 ~l~e~~pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~ 185 (251)
T COG4700 149 DLMEYNPAFRSPDGHLLFARTLAAQGKYADAESAFEV 185 (251)
T ss_pred HHhhcCCccCCCCchHHHHHHHHhcCCchhHHHHHHH
Confidence 99999995 355567777889999999999888764
No 206
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=96.64 E-value=0.0024 Score=38.27 Aligned_cols=32 Identities=13% Similarity=0.259 Sum_probs=29.2
Q ss_pred hhhhhHHHHHHcCCcHHHHHHHHHHHHcCCCC
Q 026773 174 IILKKLIRVSHFNRFEEGAEQFRIDVAQNPND 205 (233)
Q Consensus 174 a~~~rG~al~~lGryeeAi~~f~kAL~lnP~d 205 (233)
++++.|.++..+|++++|++.|++.++.-|+.
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~s 33 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPDS 33 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHCcCC
Confidence 56679999999999999999999999999873
No 207
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.62 E-value=0.011 Score=47.21 Aligned_cols=64 Identities=16% Similarity=0.102 Sum_probs=51.1
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHHHcCCcHHHHHHHHHHHH
Q 026773 123 EAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSHFNRFEEGAEQFRIDVA 200 (233)
Q Consensus 123 ~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~lGryeeAi~~f~kAL~ 200 (233)
...+...++..+...|++++|+...++++++||.+- ..+. .+-.++..+|+..+|++.|++..+
T Consensus 61 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E-----~~~~---------~lm~~~~~~g~~~~A~~~Y~~~~~ 124 (146)
T PF03704_consen 61 YLDALERLAEALLEAGDYEEALRLLQRALALDPYDE-----EAYR---------LLMRALAAQGRRAEALRVYERYRR 124 (146)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H-----HHHH---------HHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCH-----HHHH---------HHHHHHHHCcCHHHHHHHHHHHHH
Confidence 356777888889999999999999999999999876 3333 378899999999999999988643
No 208
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=96.58 E-value=0.028 Score=57.54 Aligned_cols=113 Identities=5% Similarity=-0.050 Sum_probs=94.2
Q ss_pred CcchHHHHHHHHhcccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHH
Q 026773 103 FIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRV 182 (233)
Q Consensus 103 ~~~~a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al 182 (233)
...+|..+...++ +.-|+....|..+|.++-++++.+.|-+.|..-++.-|+.. +. |. .+..+-
T Consensus 666 ~~eeA~rllEe~l--k~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~i-----pL-Wl--------lLakle 729 (913)
T KOG0495|consen 666 NVEEALRLLEEAL--KSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSI-----PL-WL--------LLAKLE 729 (913)
T ss_pred hHHHHHHHHHHHH--HhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCc-----hH-HH--------HHHHHH
Confidence 4455666666666 88899999999999999999999999999999999999988 44 43 377777
Q ss_pred HHcCCcHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHh
Q 026773 183 SHFNRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLE 231 (233)
Q Consensus 183 ~~lGryeeAi~~f~kAL~lnP~d~e~~~~~~l~~a~Lg~~dEA~~~~l~ 231 (233)
-..|..-.|...++++.-.||.++..|+-.-..+.+.|..+.|...+-+
T Consensus 730 Ek~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~lmak 778 (913)
T KOG0495|consen 730 EKDGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQAELLMAK 778 (913)
T ss_pred HHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHHHHH
Confidence 7888999999999999999999997544444556689999999877654
No 209
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.52 E-value=0.0061 Score=56.20 Aligned_cols=135 Identities=13% Similarity=0.103 Sum_probs=98.3
Q ss_pred CCchhhhHHhhhhccCCcc--h----hhccccccccccccccccchhHHHhccCcchHHHHHHHHhc------ccCCCCC
Q 026773 56 NPPLYSFHRSLLTSKAPLS--V----QTHINSLFSTPRGHYLQNRAPTFTRRLFIPSVSGIWDALTG------GNNNSRE 123 (233)
Q Consensus 56 ~~~~~~~~~~~~~~~~~~~--~----~~~~n~~~~~~~~h~~~~~~~~~~r~~~~~~a~~i~~~~i~------~~l~P~~ 123 (233)
||--.-||=-||.--+|-. + -+.+....+.+-+|.-+|. +=+.+-..+|+..|..+++ ++..|.+
T Consensus 143 nPqpL~FviellqVe~P~qYq~e~WqlsddeKmkav~~l~q~GN~---lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e 219 (329)
T KOG0545|consen 143 NPQPLVFVIELLQVEAPSQYQRETWQLSDDEKMKAVPVLHQEGNR---LFKLGRYKEASSKYREAIICLRNLQLKEKPGE 219 (329)
T ss_pred CCCceEeehhhhhccCchhhccccccCCchHhhhhhHHHHHhhhh---hhhhccHHHHHHHHHHHHHHHHHHHhccCCCC
Confidence 7766678888887777721 1 2334455555666655544 3444433456666655542 2455655
Q ss_pred H----------HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHHHcCCcHHHHH
Q 026773 124 A----------VVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSHFNRFEEGAE 193 (233)
Q Consensus 124 a----------~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~lGryeeAi~ 193 (233)
+ ..+.|...++...|+|-++++.....+..+|++. .+++. ||.++...=+-+||.+
T Consensus 220 ~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL~~~~~nv-----KA~fr---------RakAhaa~Wn~~eA~~ 285 (329)
T KOG0545|consen 220 PEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEILRHHPGNV-----KAYFR---------RAKAHAAVWNEAEAKA 285 (329)
T ss_pred hHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHHhcCCchH-----HHHHH---------HHHHHHhhcCHHHHHH
Confidence 4 4678889999999999999999999999999998 44454 9999999999999999
Q ss_pred HHHHHHHcCCCCHH
Q 026773 194 QFRIDVAQNPNDTE 207 (233)
Q Consensus 194 ~f~kAL~lnP~d~e 207 (233)
||.++++++|.-..
T Consensus 286 D~~~vL~ldpslas 299 (329)
T KOG0545|consen 286 DLQKVLELDPSLAS 299 (329)
T ss_pred HHHHHHhcChhhHH
Confidence 99999999997554
No 210
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.49 E-value=0.056 Score=50.44 Aligned_cols=95 Identities=15% Similarity=0.104 Sum_probs=64.4
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHHHcCCcHHHHHHHH------
Q 026773 123 EAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSHFNRFEEGAEQFR------ 196 (233)
Q Consensus 123 ~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~lGryeeAi~~f~------ 196 (233)
..+.-..-|......|++.+|...|+.+++.+|++. ... +.++.++...|+.|+|.+.++
T Consensus 133 ~~e~~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~~-----~~~---------~~la~~~l~~g~~e~A~~iL~~lP~~~ 198 (304)
T COG3118 133 EEEEALAEAKELIEAEDFGEAAPLLKQALQAAPENS-----EAK---------LLLAECLLAAGDVEAAQAILAALPLQA 198 (304)
T ss_pred HHHHHHHHhhhhhhccchhhHHHHHHHHHHhCcccc-----hHH---------HHHHHHHHHcCChHHHHHHHHhCcccc
Confidence 334445556666677777777777777777777665 222 225556666666655554443
Q ss_pred ----------------------------HHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHh
Q 026773 197 ----------------------------IDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLE 231 (233)
Q Consensus 197 ----------------------------kAL~lnP~d~e~~~~~~l~~a~Lg~~dEA~~~~l~ 231 (233)
+.+..||+|.+..+-.+..+...|++++|.+.++.
T Consensus 199 ~~~~~~~l~a~i~ll~qaa~~~~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~ 261 (304)
T COG3118 199 QDKAAHGLQAQIELLEQAAATPEIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLA 261 (304)
T ss_pred hhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 34556899999888888888899999999998764
No 211
>PRK04841 transcriptional regulator MalT; Provisional
Probab=96.41 E-value=0.032 Score=56.54 Aligned_cols=100 Identities=9% Similarity=-0.148 Sum_probs=73.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHHHcCCcHHHHHHHHHHHHcCC
Q 026773 124 AVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSHFNRFEEGAEQFRIDVAQNP 203 (233)
Q Consensus 124 a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~lGryeeAi~~f~kAL~lnP 203 (233)
..+...+|.++...|++++|...+++|++..|... ... ...+...+|.++...|++++|...++++++...
T Consensus 452 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~-----~~~----~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~ 522 (903)
T PRK04841 452 AEFNALRAQVAINDGDPEEAERLAELALAELPLTW-----YYS----RIVATSVLGEVHHCKGELARALAMMQQTEQMAR 522 (903)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCcc-----HHH----HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHh
Confidence 45666788999999999999999999999766543 110 122345689999999999999999999997644
Q ss_pred C--C--HH--HHHHHHHHHHHcCCHHHHHHHHHhh
Q 026773 204 N--D--TE--ESIWCFLCEAQLYGVDEARNRFLEA 232 (233)
Q Consensus 204 ~--d--~e--~~~~~~l~~a~Lg~~dEA~~~~l~~ 232 (233)
. + .. ...+.+.+...+|++++|...+.++
T Consensus 523 ~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~a 557 (903)
T PRK04841 523 QHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKA 557 (903)
T ss_pred hhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 2 1 11 2233455566899999999887653
No 212
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=96.35 E-value=0.05 Score=52.40 Aligned_cols=81 Identities=15% Similarity=0.037 Sum_probs=56.1
Q ss_pred cCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHHHcCCcHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Q 026773 137 QGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSHFNRFEEGAEQFRIDVAQNPNDTEESIWCFLCE 216 (233)
Q Consensus 137 lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~lGryeeAi~~f~kAL~lnP~d~e~~~~~~l~~ 216 (233)
-||++.=++..++.++..|+++ ..+. -+|..+++.+.|.+|-+.|+.|++..|+.. .+.+.+-++
T Consensus 307 ~~d~~~l~k~~e~~l~~h~~~p-----~L~~---------tLG~L~~k~~~w~kA~~~leaAl~~~~s~~-~~~~la~~~ 371 (400)
T COG3071 307 PGDPEPLIKAAEKWLKQHPEDP-----LLLS---------TLGRLALKNKLWGKASEALEAALKLRPSAS-DYAELADAL 371 (400)
T ss_pred CCCchHHHHHHHHHHHhCCCCh-----hHHH---------HHHHHHHHhhHHHHHHHHHHHHHhcCCChh-hHHHHHHHH
Confidence 3444444444555555555555 2333 488888888888888888888888888644 467788888
Q ss_pred HHcCCHHHHHHHHHhh
Q 026773 217 AQLYGVDEARNRFLEA 232 (233)
Q Consensus 217 a~Lg~~dEA~~~~l~~ 232 (233)
.++|+.++|.+.+.++
T Consensus 372 ~~~g~~~~A~~~r~e~ 387 (400)
T COG3071 372 DQLGEPEEAEQVRREA 387 (400)
T ss_pred HHcCChHHHHHHHHHH
Confidence 8888888888877653
No 213
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=96.34 E-value=0.0047 Score=39.14 Aligned_cols=29 Identities=10% Similarity=0.037 Sum_probs=23.8
Q ss_pred hhhhhHHHHHHcCCcHHHHHHHHHHHHcC
Q 026773 174 IILKKLIRVSHFNRFEEGAEQFRIDVAQN 202 (233)
Q Consensus 174 a~~~rG~al~~lGryeeAi~~f~kAL~ln 202 (233)
++.++|.++..+|+|++|++.|++++.+.
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l~ 29 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALALA 29 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 35679999999999999999999966543
No 214
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=96.28 E-value=0.0027 Score=62.03 Aligned_cols=100 Identities=10% Similarity=-0.043 Sum_probs=76.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHHHcCCcHHHHHHHHHHH----
Q 026773 124 AVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSHFNRFEEGAEQFRIDV---- 199 (233)
Q Consensus 124 a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~lGryeeAi~~f~kAL---- 199 (233)
..+|.++|..|+.+|||+.||..-+.-++|.-.+.. ..... .|+-|+|.++..+|+++.|++.|.+.+
T Consensus 195 GRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGD----rAaeR----RA~sNlgN~hiflg~fe~A~ehYK~tl~LAi 266 (639)
T KOG1130|consen 195 GRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGD----RAAER----RAHSNLGNCHIFLGNFELAIEHYKLTLNLAI 266 (639)
T ss_pred cchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhh----HHHHH----HhhcccchhhhhhcccHhHHHHHHHHHHHHH
Confidence 468999999999999999999999999999887762 22222 467789999999999999999998754
Q ss_pred HcCCCCH--HHHHHHHHHHHHcCCHHHHHHHHHh
Q 026773 200 AQNPNDT--EESIWCFLCEAQLYGVDEARNRFLE 231 (233)
Q Consensus 200 ~lnP~d~--e~~~~~~l~~a~Lg~~dEA~~~~l~ 231 (233)
++..... +..+-++.++..+..++.|+.++++
T Consensus 267 elg~r~vEAQscYSLgNtytll~e~~kAI~Yh~r 300 (639)
T KOG1130|consen 267 ELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQR 300 (639)
T ss_pred HhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 4444333 3345566667777788888887653
No 215
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=96.25 E-value=0.017 Score=40.53 Aligned_cols=40 Identities=13% Similarity=0.098 Sum_probs=32.5
Q ss_pred hhHHHHHHcCCcHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Q 026773 177 KKLIRVSHFNRFEEGAEQFRIDVAQNPNDTEESIWCFLCE 216 (233)
Q Consensus 177 ~rG~al~~lGryeeAi~~f~kAL~lnP~d~e~~~~~~l~~ 216 (233)
.+++.++.+|+|++|.+..+.+++++|+|.++......+.
T Consensus 6 ~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~~i~ 45 (53)
T PF14853_consen 6 YLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLKELIE 45 (53)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHHHHHH
Confidence 4899999999999999999999999999998765554443
No 216
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=96.23 E-value=0.029 Score=58.60 Aligned_cols=101 Identities=10% Similarity=0.090 Sum_probs=83.8
Q ss_pred HHHHHHHHhcccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHHHcC
Q 026773 107 VSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSHFN 186 (233)
Q Consensus 107 a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~lG 186 (233)
|..-.+++. +.-||..-|-...|..++++|+.++|....+.--.+.|++. ...-. .-.+|..+|
T Consensus 28 al~~~~kll--kk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~-----~tLq~---------l~~~y~d~~ 91 (932)
T KOG2053|consen 28 ALAKLGKLL--KKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDD-----LTLQF---------LQNVYRDLG 91 (932)
T ss_pred HHHHHHHHH--HHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCch-----HHHHH---------HHHHHHHHh
Confidence 455555556 78899999999999999999999999988887777777754 33333 788999999
Q ss_pred CcHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHH
Q 026773 187 RFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQLYGVDE 224 (233)
Q Consensus 187 ryeeAi~~f~kAL~lnP~d~e~~~~~~l~~a~Lg~~dE 224 (233)
++++|+..|++++..+|+ -+..+..+.|..+-+.+.+
T Consensus 92 ~~d~~~~~Ye~~~~~~P~-eell~~lFmayvR~~~yk~ 128 (932)
T KOG2053|consen 92 KLDEAVHLYERANQKYPS-EELLYHLFMAYVREKSYKK 128 (932)
T ss_pred hhhHHHHHHHHHHhhCCc-HHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999 7777888889888777654
No 217
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.16 E-value=0.039 Score=55.57 Aligned_cols=88 Identities=10% Similarity=0.063 Sum_probs=66.1
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHHHcCCcHHHHHHHHHHHHc------
Q 026773 128 IRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSHFNRFEEGAEQFRIDVAQ------ 201 (233)
Q Consensus 128 ~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~lGryeeAi~~f~kAL~l------ 201 (233)
+.++++.+++++.++|+.+++ -+|+... ...- -++.++|.+|+|++|++.|+..++-
T Consensus 83 fEKAYc~Yrlnk~Dealk~~~---~~~~~~~-----~ll~---------L~AQvlYrl~~ydealdiY~~L~kn~~dd~d 145 (652)
T KOG2376|consen 83 FEKAYCEYRLNKLDEALKTLK---GLDRLDD-----KLLE---------LRAQVLYRLERYDEALDIYQHLAKNNSDDQD 145 (652)
T ss_pred HHHHHHHHHcccHHHHHHHHh---cccccch-----HHHH---------HHHHHHHHHhhHHHHHHHHHHHHhcCCchHH
Confidence 689999999999999999999 4555444 2222 3899999999999999999874332
Q ss_pred ---------------------C---CC-CHHHHHHHHHHHHHcCCHHHHHHHHHhh
Q 026773 202 ---------------------N---PN-DTEESIWCFLCEAQLYGVDEARNRFLEA 232 (233)
Q Consensus 202 ---------------------n---P~-d~e~~~~~~l~~a~Lg~~dEA~~~~l~~ 232 (233)
. |+ ..+.+++.+..+...|++.+|.+.++++
T Consensus 146 ~~~r~nl~a~~a~l~~~~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA 201 (652)
T KOG2376|consen 146 EERRANLLAVAAALQVQLLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKA 201 (652)
T ss_pred HHHHHHHHHHHHhhhHHHHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 2 33 2333455566678999999999998876
No 218
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.15 E-value=0.012 Score=56.77 Aligned_cols=83 Identities=14% Similarity=0.171 Sum_probs=67.1
Q ss_pred HcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHHHcCCcHHHHHHHHHHHHcCCCCHHHHHHHHHH
Q 026773 136 RQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSHFNRFEEGAEQFRIDVAQNPNDTEESIWCFLC 215 (233)
Q Consensus 136 ~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~lGryeeAi~~f~kAL~lnP~d~e~~~~~~l~ 215 (233)
...||++||...+-+..++-+.- ++--.| .|..++++|+|++|++.|+-+.+-+.-+.+.+.+++.|
T Consensus 34 s~rDytGAislLefk~~~~~EEE---~~~~lW----------ia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc 100 (557)
T KOG3785|consen 34 SNRDYTGAISLLEFKLNLDREEE---DSLQLW----------IAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACC 100 (557)
T ss_pred hcccchhHHHHHHHhhccchhhh---HHHHHH----------HHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHH
Confidence 34699999999998887765443 112445 59999999999999999999988776677777888889
Q ss_pred HHHcCCHHHHHHHHHh
Q 026773 216 EAQLYGVDEARNRFLE 231 (233)
Q Consensus 216 ~a~Lg~~dEA~~~~l~ 231 (233)
.-.+|.+.||.....+
T Consensus 101 ~FyLg~Y~eA~~~~~k 116 (557)
T KOG3785|consen 101 KFYLGQYIEAKSIAEK 116 (557)
T ss_pred HHHHHHHHHHHHHHhh
Confidence 9999999999887654
No 219
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=96.11 E-value=0.05 Score=49.07 Aligned_cols=110 Identities=12% Similarity=0.221 Sum_probs=75.3
Q ss_pred CcchHHHHHHHHhcccCCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHH
Q 026773 103 FIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFR-QGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIR 181 (233)
Q Consensus 103 ~~~~a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~-lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~a 181 (233)
-...+..++..+. +..+-...+|...+..-+. .+|.+.|...|+++++.-|++. .+++. -..-
T Consensus 16 g~~~aR~vF~~a~--~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~-----~~~~~---------Y~~~ 79 (280)
T PF05843_consen 16 GIEAARKVFKRAR--KDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDP-----DFWLE---------YLDF 79 (280)
T ss_dssp HHHHHHHHHHHHH--CCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-H-----HHHHH---------HHHH
T ss_pred ChHHHHHHHHHHH--cCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCH-----HHHHH---------HHHH
Confidence 5666777888887 5566678888888888676 5666669999999999988887 34333 3455
Q ss_pred HHHcCCcHHHHHHHHHHHHcCCCCH-HHHHHHHHH--HHHcCCHHHHHHH
Q 026773 182 VSHFNRFEEGAEQFRIDVAQNPNDT-EESIWCFLC--EAQLYGVDEARNR 228 (233)
Q Consensus 182 l~~lGryeeAi~~f~kAL~lnP~d~-e~~~~~~l~--~a~Lg~~dEA~~~ 228 (233)
+..+|+.+.|...|++++..-|.+. ...+|.... +.+-|+.+.....
T Consensus 80 l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v 129 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKV 129 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 6678899999999999998877665 445776544 3356766655544
No 220
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=96.05 E-value=0.016 Score=36.06 Aligned_cols=31 Identities=16% Similarity=0.125 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 026773 124 AVVAIRRGMLLFRQGDVVGSVAEFDKAIELD 154 (233)
Q Consensus 124 a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLd 154 (233)
+.++.++|.++..+|++++|+..+++|+++-
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 32 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALEIR 32 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHHHH
Confidence 4678999999999999999999999999875
No 221
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=95.89 E-value=0.057 Score=49.61 Aligned_cols=68 Identities=13% Similarity=0.215 Sum_probs=60.1
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHHHcCCcHHHHHHHHHHHHcCCCCHH
Q 026773 128 IRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSHFNRFEEGAEQFRIDVAQNPNDTE 207 (233)
Q Consensus 128 ~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~lGryeeAi~~f~kAL~lnP~d~e 207 (233)
.+.=.++.+.++++.|...-++.+.++|+++ +-+. .||.+|..+|-+.-|+++++..++.-|+++.
T Consensus 185 ~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp------~eir--------DrGliY~ql~c~~vAl~dl~~~~~~~P~~~~ 250 (269)
T COG2912 185 RNLKAALLRELQWELALRVAERLLDLNPEDP------YEIR--------DRGLIYAQLGCYHVALEDLSYFVEHCPDDPI 250 (269)
T ss_pred HHHHHHHHHhhchHHHHHHHHHHHhhCCCCh------hhcc--------CcHHHHHhcCCchhhHHHHHHHHHhCCCchH
Confidence 3444567788999999999999999999998 5555 6999999999999999999999999999987
Q ss_pred HH
Q 026773 208 ES 209 (233)
Q Consensus 208 ~~ 209 (233)
+-
T Consensus 251 a~ 252 (269)
T COG2912 251 AE 252 (269)
T ss_pred HH
Confidence 53
No 222
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=95.82 E-value=0.024 Score=53.94 Aligned_cols=72 Identities=13% Similarity=0.185 Sum_probs=61.7
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHHHcCCcHHHHHHHHHHHHcCCCCHH
Q 026773 128 IRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSHFNRFEEGAEQFRIDVAQNPNDTE 207 (233)
Q Consensus 128 ~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~lGryeeAi~~f~kAL~lnP~d~e 207 (233)
.+.+.-..+.|+.|+|...|+.|+.++|+++ .. +...|...-+-++.-+|-.+|-+|+.++|.+.+
T Consensus 120 l~~A~~~~~~Gk~ekA~~lfeHAlalaP~~p-----~~---------L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nse 185 (472)
T KOG3824|consen 120 LKAAGRSRKDGKLEKAMTLFEHALALAPTNP-----QI---------LIEMGQFREMHNEIVEADQCYVKALTISPGNSE 185 (472)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHhcCCCCH-----HH---------HHHHhHHHHhhhhhHhhhhhhheeeeeCCCchH
Confidence 3444445678999999999999999999999 33 345899999999999999999999999999999
Q ss_pred HHHHHH
Q 026773 208 ESIWCF 213 (233)
Q Consensus 208 ~~~~~~ 213 (233)
+..++.
T Consensus 186 ALvnR~ 191 (472)
T KOG3824|consen 186 ALVNRA 191 (472)
T ss_pred HHhhhh
Confidence 887774
No 223
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=95.75 E-value=0.012 Score=53.81 Aligned_cols=63 Identities=21% Similarity=0.305 Sum_probs=54.9
Q ss_pred HHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHHHcCCcHHHHHHHHHHHHcCCCCHHH
Q 026773 132 MLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSHFNRFEEGAEQFRIDVAQNPNDTEE 208 (233)
Q Consensus 132 ~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~lGryeeAi~~f~kAL~lnP~d~e~ 208 (233)
..+...||.+.|.+.|++|+++-|+.. .-|++ .|...-+.|+++.|.+.|++.+++||.|-..
T Consensus 3 ~~~~~~~D~~aaaely~qal~lap~w~-----~gwfR---------~g~~~ekag~~daAa~a~~~~L~ldp~D~~g 65 (287)
T COG4976 3 YMLAESGDAEAAAELYNQALELAPEWA-----AGWFR---------LGEYTEKAGEFDAAAAAYEEVLELDPEDHGG 65 (287)
T ss_pred chhcccCChHHHHHHHHHHhhcCchhh-----hhhhh---------cchhhhhcccHHHHHHHHHHHHcCCcccccc
Confidence 356778999999999999999999887 34444 9999999999999999999999999987643
No 224
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=95.74 E-value=0.015 Score=36.19 Aligned_cols=30 Identities=13% Similarity=0.079 Sum_probs=26.2
Q ss_pred hhhhhhhHHHHHHcCCcHHHHHHHHHHHHc
Q 026773 172 VGIILKKLIRVSHFNRFEEGAEQFRIDVAQ 201 (233)
Q Consensus 172 ~~a~~~rG~al~~lGryeeAi~~f~kAL~l 201 (233)
+.+++++|.++..+|++++|++.+++++++
T Consensus 2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 2 ASALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 356788999999999999999999999886
No 225
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=95.68 E-value=0.048 Score=52.52 Aligned_cols=69 Identities=13% Similarity=0.175 Sum_probs=62.7
Q ss_pred cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHHHcCCcHHHHHHHHH
Q 026773 118 NNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSHFNRFEEGAEQFRI 197 (233)
Q Consensus 118 ~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~lGryeeAi~~f~k 197 (233)
+..|++|..+..+|+.+++.+.+.+|-..|+.||...|... .+. .+|.++-.+|+.++|-++++.
T Consensus 322 ~~h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~-----~~~----------~la~~~~~~g~~~~A~~~r~e 386 (400)
T COG3071 322 KQHPEDPLLLSTLGRLALKNKLWGKASEALEAALKLRPSAS-----DYA----------ELADALDQLGEPEEAEQVRRE 386 (400)
T ss_pred HhCCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChh-----hHH----------HHHHHHHHcCChHHHHHHHHH
Confidence 67899999999999999999999999999999999999876 333 479999999999999999999
Q ss_pred HHHc
Q 026773 198 DVAQ 201 (233)
Q Consensus 198 AL~l 201 (233)
++.+
T Consensus 387 ~L~~ 390 (400)
T COG3071 387 ALLL 390 (400)
T ss_pred HHHH
Confidence 8853
No 226
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=95.58 E-value=0.15 Score=43.37 Aligned_cols=98 Identities=12% Similarity=0.129 Sum_probs=76.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHHHcCCcHHHHHHHHHHHHcCC
Q 026773 124 AVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSHFNRFEEGAEQFRIDVAQNP 203 (233)
Q Consensus 124 a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~lGryeeAi~~f~kAL~lnP 203 (233)
..++..+|.-+.+.||.++|++.|.++.+-..... .+++++++.=.+....|++....+..+++-.+-.
T Consensus 36 r~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~-----------~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~ 104 (177)
T PF10602_consen 36 RMALEDLADHYCKIGDLEEALKAYSRARDYCTSPG-----------HKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIE 104 (177)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHH-----------HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHh
Confidence 57889999999999999999999999777543222 3567888899999999999999998888766533
Q ss_pred --CCHHH----HHHHHHHHHHcCCHHHHHHHHHhh
Q 026773 204 --NDTEE----SIWCFLCEAQLYGVDEARNRFLEA 232 (233)
Q Consensus 204 --~d~e~----~~~~~l~~a~Lg~~dEA~~~~l~~ 232 (233)
.|.+. ..+.|+.....+++.+|-..|+++
T Consensus 105 ~~~d~~~~nrlk~~~gL~~l~~r~f~~AA~~fl~~ 139 (177)
T PF10602_consen 105 KGGDWERRNRLKVYEGLANLAQRDFKEAAELFLDS 139 (177)
T ss_pred ccchHHHHHHHHHHHHHHHHHhchHHHHHHHHHcc
Confidence 23322 233456667889999999999864
No 227
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=95.54 E-value=0.031 Score=39.23 Aligned_cols=34 Identities=12% Similarity=0.198 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCC
Q 026773 125 VVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQK 158 (233)
Q Consensus 125 ~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~ 158 (233)
+-++.++..++++|+|++|....+++++++|++.
T Consensus 2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~ 35 (53)
T PF14853_consen 2 DCLYYLAIGHYKLGEYEKARRYCDALLEIEPDNR 35 (53)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-H
T ss_pred hhHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcH
Confidence 3467899999999999999999999999999987
No 228
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=95.53 E-value=0.03 Score=56.26 Aligned_cols=99 Identities=13% Similarity=0.129 Sum_probs=75.7
Q ss_pred HHHHHHHhcccCCCCCHHHHHHHHHHHHH---cCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHHH
Q 026773 108 SGIWDALTGGNNNSREAVVAIRRGMLLFR---QGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSH 184 (233)
Q Consensus 108 ~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~---lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~ 184 (233)
...|..++ +.-|....-|.+|+.++++ .||.-.|+.|...|+++||-.. ..++. +..++..
T Consensus 394 i~~~s~a~--q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~-----kah~~---------la~aL~e 457 (758)
T KOG1310|consen 394 ISHYSRAI--QYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQ-----KAHFR---------LARALNE 457 (758)
T ss_pred HHHHHHHh--hhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHH-----HHHHH---------HHHHHHH
Confidence 33444444 6678889999999888875 5799999999999999999877 44444 7999999
Q ss_pred cCCcHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHH
Q 026773 185 FNRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQLYGVDEA 225 (233)
Q Consensus 185 lGryeeAi~~f~kAL~lnP~d~e~~~~~~l~~a~Lg~~dEA 225 (233)
++++.||+++...+....|.|.. ....|++--.+..+|
T Consensus 458 l~r~~eal~~~~alq~~~Ptd~a---~~~~v~~l~rDi~aa 495 (758)
T KOG1310|consen 458 LTRYLEALSCHWALQMSFPTDVA---RQNFVLCLPRDISAA 495 (758)
T ss_pred HhhHHHhhhhHHHHhhcCchhhh---hhhhhhccccchHHH
Confidence 99999999999988888886553 344555544455554
No 229
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=95.52 E-value=0.16 Score=51.33 Aligned_cols=92 Identities=11% Similarity=-0.022 Sum_probs=58.6
Q ss_pred HHHHHHHHhcccCCCCCHHHHHHH--HHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHHH
Q 026773 107 VSGIWDALTGGNNNSREAVVAIRR--GMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSH 184 (233)
Q Consensus 107 a~~i~~~~i~~~l~P~~a~Ay~~R--G~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~ 184 (233)
+.+++-..++..++|++++.+... ...+...++...|+...+.++..||++. +.+. ++|.++..
T Consensus 48 ~~~~~a~~~~~~~~~~~~~llla~~lsi~~~~~~~~~~~~~~~~~~l~~~~~~~-----~~~~---------~L~~ale~ 113 (620)
T COG3914 48 ALAIYALLLGIAINDVNPELLLAAFLSILLAPLADSTLAFLAKRIPLSVNPENC-----PAVQ---------NLAAALEL 113 (620)
T ss_pred hHHHHHHHccCccCCCCHHHHHHHHHHhhccccccchhHHHHHhhhHhcCcccc-----hHHH---------HHHHHHHH
Confidence 444555555556777777664333 6666667777777777777777777776 3333 36777666
Q ss_pred cCCcHHHHHHHHH-HHHcCCCCHHHHHHH
Q 026773 185 FNRFEEGAEQFRI-DVAQNPNDTEESIWC 212 (233)
Q Consensus 185 lGryeeAi~~f~k-AL~lnP~d~e~~~~~ 212 (233)
.|....++.++.. +.+..|++.+....+
T Consensus 114 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~~ 142 (620)
T COG3914 114 DGLQFLALADISEIAEWLSPDNAEFLGHL 142 (620)
T ss_pred hhhHHHHHHHHHHHHHhcCcchHHHHhhH
Confidence 7766666666665 777777776654444
No 230
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=95.47 E-value=0.058 Score=44.93 Aligned_cols=69 Identities=14% Similarity=0.217 Sum_probs=52.6
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-------CCCCCCCccchhhhhhhhhhhhhhhHHHHHHcCCcHHHHHHH
Q 026773 123 EAVVAIRRGMLLFRQGDVVGSVAEFDKAIEL-------DPRQKISGKGAYRFTISIVGIILKKLIRVSHFNRFEEGAEQF 195 (233)
Q Consensus 123 ~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeL-------dP~~~~~~~~~y~~~~~~~~a~~~rG~al~~lGryeeAi~~f 195 (233)
|+-.|..+.-++..+|+|++++..-++|+.. +-+.. -.| |-+..+|+.++-.+|+.+||+..|
T Consensus 54 DA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qdeG------klW----IaaVfsra~Al~~~Gr~~eA~~~f 123 (144)
T PF12968_consen 54 DAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDEG------KLW----IAAVFSRAVALEGLGRKEEALKEF 123 (144)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHH------HHH----HHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred HHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccccc------hhH----HHHHHHHHHHHHhcCChHHHHHHH
Confidence 4566777888999999999999998888853 33222 223 456788999999999999999999
Q ss_pred HHHHHc
Q 026773 196 RIDVAQ 201 (233)
Q Consensus 196 ~kAL~l 201 (233)
+++-+.
T Consensus 124 r~agEM 129 (144)
T PF12968_consen 124 RMAGEM 129 (144)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 998764
No 231
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=95.34 E-value=0.019 Score=57.12 Aligned_cols=88 Identities=20% Similarity=0.184 Sum_probs=64.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHh-----hCCCCCCCccchhhh---hhhhhhhhhhhHHHHHHcCCcHHHHHHH
Q 026773 124 AVVAIRRGMLLFRQGDVVGSVAEFDKAIE-----LDPRQKISGKGAYRF---TISIVGIILKKLIRVSHFNRFEEGAEQF 195 (233)
Q Consensus 124 a~Ay~~RG~a~~~lGdyeeAIadfdkAIe-----LdP~~~~~~~~~y~~---~~~~~~a~~~rG~al~~lGryeeAi~~f 195 (233)
-..|.++|.++++.|.|.-++..|.||++ |.-+.. ..-.. ++.-..|.+|-|+.+.+.||.-+|.++|
T Consensus 283 cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~----~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf 358 (696)
T KOG2471|consen 283 CIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLK----PAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCF 358 (696)
T ss_pred heeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCC----CCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHH
Confidence 35678999999999999999999999997 111100 01000 1122567889999999999999999999
Q ss_pred HHHHHcCCCCHHHHHHHHHHHH
Q 026773 196 RIDVAQNPNDTEESIWCFLCEA 217 (233)
Q Consensus 196 ~kAL~lnP~d~e~~~~~~l~~a 217 (233)
.+++..--.+|. +|+.+++|
T Consensus 359 ~~av~vfh~nPr--lWLRlAEc 378 (696)
T KOG2471|consen 359 QKAVHVFHRNPR--LWLRLAEC 378 (696)
T ss_pred HHHHHHHhcCcH--HHHHHHHH
Confidence 999987666664 66654433
No 232
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=95.24 E-value=0.096 Score=51.45 Aligned_cols=101 Identities=16% Similarity=0.066 Sum_probs=75.4
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchh--hhhh-hh-hhhhhhhHHHHHHcCCcHHHHHHHHHHHHcCCC
Q 026773 129 RRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAY--RFTI-SI-VGIILKKLIRVSHFNRFEEGAEQFRIDVAQNPN 204 (233)
Q Consensus 129 ~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y--~~~~-~~-~~a~~~rG~al~~lGryeeAi~~f~kAL~lnP~ 204 (233)
.=+..++++|+|..|+.-|..|+++-.+-...+|-.+ .-.+ ++ .-|--.+..+|..+++.+-|+..-.++|.+||.
T Consensus 181 ~das~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI~lnP~ 260 (569)
T PF15015_consen 181 KDASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSINLNPS 260 (569)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhhhcCcc
Confidence 4456778889999999999999998644322111000 0000 01 122346788999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHH
Q 026773 205 DTEESIWCFLCEAQLYGVDEARNRF 229 (233)
Q Consensus 205 d~e~~~~~~l~~a~Lg~~dEA~~~~ 229 (233)
..-.++|.+.|...+.++.||-..+
T Consensus 261 ~frnHLrqAavfR~LeRy~eAarSa 285 (569)
T PF15015_consen 261 YFRNHLRQAAVFRRLERYSEAARSA 285 (569)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999987654
No 233
>PRK10941 hypothetical protein; Provisional
Probab=95.24 E-value=0.051 Score=49.65 Aligned_cols=61 Identities=10% Similarity=0.086 Sum_probs=53.1
Q ss_pred hHHHhccCcchHHHHHHHHhcccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCC
Q 026773 96 PTFTRRLFIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQK 158 (233)
Q Consensus 96 ~~~~r~~~~~~a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~ 158 (233)
.++.+..-++.|..+-+.++ .++|+++.-+--||.++.++|.+..|+.|++.-|+..|+++
T Consensus 189 ~~~~~~~~~~~AL~~~e~ll--~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp 249 (269)
T PRK10941 189 AALMEEKQMELALRASEALL--QFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDP 249 (269)
T ss_pred HHHHHcCcHHHHHHHHHHHH--HhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCch
Confidence 34455555667777777777 89999999999999999999999999999999999999998
No 234
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=95.24 E-value=0.79 Score=41.95 Aligned_cols=136 Identities=13% Similarity=0.144 Sum_probs=92.3
Q ss_pred cccccccchhHHHhccCcchHHHHHHHHhcccCCC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccc
Q 026773 87 RGHYLQNRAPTFTRRLFIPSVSGIWDALTGGNNNS---REAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKG 163 (233)
Q Consensus 87 ~~h~~~~~~~~~~r~~~~~~a~~i~~~~i~~~l~P---~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~ 163 (233)
..+-++.+...+++. -+.+|...+.++. ...| -...+-..++.++++.|+|++|+...|+-|++.|+++. .
T Consensus 34 ~~~LY~~g~~~L~~g-n~~~A~~~fe~l~--~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n---~ 107 (254)
T COG4105 34 ASELYNEGLTELQKG-NYEEAIKYFEALD--SRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPN---A 107 (254)
T ss_pred HHHHHHHHHHHHhcC-CHHHHHHHHHHHH--HcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCC---h
Confidence 344445554444444 4455777888887 4444 45688999999999999999999999999999999883 1
Q ss_pred hhhhhh---------------------------------------------------hhhhhhhhhHHHHHHcCCcHHHH
Q 026773 164 AYRFTI---------------------------------------------------SIVGIILKKLIRVSHFNRFEEGA 192 (233)
Q Consensus 164 ~y~~~~---------------------------------------------------~~~~a~~~rG~al~~lGryeeAi 192 (233)
+|.+.+ +..+-=+..|.-|.+-|.+..|+
T Consensus 108 dY~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~ 187 (254)
T COG4105 108 DYAYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVAAI 187 (254)
T ss_pred hHHHHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHH
Confidence 222110 11222235566777778888888
Q ss_pred HHHHHHHHcCCCC---HHHHHHHHHHHHHcCCHHHHHHH
Q 026773 193 EQFRIDVAQNPND---TEESIWCFLCEAQLYGVDEARNR 228 (233)
Q Consensus 193 ~~f~kAL~lnP~d---~e~~~~~~l~~a~Lg~~dEA~~~ 228 (233)
.-++.+++-=|+- .+++.++.-++..+|-.++|...
T Consensus 188 nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~ 226 (254)
T COG4105 188 NRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKT 226 (254)
T ss_pred HHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHH
Confidence 8888888865542 33455666666678877877653
No 235
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.22 E-value=0.11 Score=50.40 Aligned_cols=119 Identities=16% Similarity=0.211 Sum_probs=76.2
Q ss_pred chHHHHHHHHhcccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCC-----------Cc--cchhhhhhhh
Q 026773 105 PSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKI-----------SG--KGAYRFTISI 171 (233)
Q Consensus 105 ~~a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~-----------~~--~~~y~~~~~~ 171 (233)
++|..-|..+. +.+--+++.+.+++.++|.+|.|.||-..-++| |+.+. -+ |....++-+.
T Consensus 74 ~~Al~~Y~~~~--~~~~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka----~k~pL~~RLlfhlahklndEk~~~~fh~~L 147 (557)
T KOG3785|consen 74 EEALNVYTFLM--NKDDAPAELGVNLACCKFYLGQYIEAKSIAEKA----PKTPLCIRLLFHLAHKLNDEKRILTFHSSL 147 (557)
T ss_pred HHHHHHHHHHh--ccCCCCcccchhHHHHHHHHHHHHHHHHHHhhC----CCChHHHHHHHHHHHHhCcHHHHHHHHHHH
Confidence 34455555555 445556677777777788888887776654443 33221 00 0000000000
Q ss_pred ---hhhhhhhHHHHHHcCCcHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 026773 172 ---VGIILKKLIRVSHFNRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQLYGVDEARNRF 229 (233)
Q Consensus 172 ---~~a~~~rG~al~~lGryeeAi~~f~kAL~lnP~d~e~~~~~~l~~a~Lg~~dEA~~~~ 229 (233)
.+=-+.++.+.|+.-.|+||++.|.+.+.-||+....-.+.++|+.++.-++-+.+.+
T Consensus 148 qD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyKlDYydvsqevl 208 (557)
T KOG3785|consen 148 QDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIALNVYMALCYYKLDYYDVSQEVL 208 (557)
T ss_pred hhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhhhhHHHHHHHHHhcchhhhHHHHH
Confidence 2223467888899999999999999999999987665677889999998777665543
No 236
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.21 E-value=0.04 Score=52.32 Aligned_cols=95 Identities=19% Similarity=0.255 Sum_probs=74.4
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHHHcCCcHHHHHHHHHHHHc
Q 026773 122 REAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSHFNRFEEGAEQFRIDVAQ 201 (233)
Q Consensus 122 ~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~lGryeeAi~~f~kAL~l 201 (233)
++++...+.|.+.++.|+|++|+.-|+.|++..--++ ...++ .+++++..|+|+.|++.....++.
T Consensus 142 n~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqp-----llAYn---------iALaHy~~~qyasALk~iSEIieR 207 (459)
T KOG4340|consen 142 NEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQP-----LLAYN---------LALAHYSSRQYASALKHISEIIER 207 (459)
T ss_pred CccchhccchheeeccccHHHHHHHHHHHHhhcCCCc-----hhHHH---------HHHHHHhhhhHHHHHHHHHHHHHh
Confidence 8899999999999999999999999999999988777 34454 899999999999999988776654
Q ss_pred ----CCC----------------CH---------HHHHHHHHHHHHcCCHHHHHHHHH
Q 026773 202 ----NPN----------------DT---------EESIWCFLCEAQLYGVDEARNRFL 230 (233)
Q Consensus 202 ----nP~----------------d~---------e~~~~~~l~~a~Lg~~dEA~~~~l 230 (233)
.|+ |+ ++....+..+.+.++++.|++.+.
T Consensus 208 G~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLt 265 (459)
T KOG4340|consen 208 GIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALT 265 (459)
T ss_pred hhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhh
Confidence 331 22 111222345667888888888764
No 237
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=95.20 E-value=0.092 Score=39.86 Aligned_cols=68 Identities=10% Similarity=0.183 Sum_probs=50.6
Q ss_pred HHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHHHcCCcHHHHHHHHHHHHcCCC
Q 026773 132 MLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSHFNRFEEGAEQFRIDVAQNPN 204 (233)
Q Consensus 132 ~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~lGryeeAi~~f~kAL~lnP~ 204 (233)
.-..+.|||.+|++...+....-..... ... .....-+.++++.++...|++++|++.+++|+++-..
T Consensus 6 ~~~~~~~dy~~A~d~L~~~fD~~~~~~~----~~~-~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are 73 (94)
T PF12862_consen 6 LNALRSGDYSEALDALHRYFDYAKQSNN----SSS-NSGLAYALLNLAELHRRFGHYEEALQALEEAIRLARE 73 (94)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHhhccc----chh-hHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHH
Confidence 3456889999999999998888665541 110 0011235678999999999999999999999997553
No 238
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=95.18 E-value=0.03 Score=36.94 Aligned_cols=32 Identities=19% Similarity=0.308 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 026773 124 AVVAIRRGMLLFRQGDVVGSVAEFDKAIELDP 155 (233)
Q Consensus 124 a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP 155 (233)
+++|..+|-+-...++|++|+.||.+|++|.-
T Consensus 1 Adv~~~Lgeisle~e~f~qA~~D~~~aL~i~~ 32 (38)
T PF10516_consen 1 ADVYDLLGEISLENENFEQAIEDYEKALEIQE 32 (38)
T ss_pred CcHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence 46789999999999999999999999999853
No 239
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=95.16 E-value=0.19 Score=45.31 Aligned_cols=94 Identities=14% Similarity=0.095 Sum_probs=65.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHHHc-CCcHHHHHHHHHHHHcCC
Q 026773 125 VVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSHF-NRFEEGAEQFRIDVAQNP 203 (233)
Q Consensus 125 ~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~l-GryeeAi~~f~kAL~lnP 203 (233)
-+|.......-+.+..++|-..|.+|.+-++-.. . +|..-+..-+.. ++.+.|.+.|+++++.-|
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~---------~-----vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~ 67 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDKRCTY---------H-----VYVAYALMEYYCNKDPKRARKIFERGLKKFP 67 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-T---------H-----HHHHHHHHHHHTCS-HHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCH---------H-----HHHHHHHHHHHhCCCHHHHHHHHHHHHHHCC
Confidence 3677888888888889999999999984333222 1 334577776775 444449999999999999
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHhh
Q 026773 204 NDTEESIWCFLCEAQLYGVDEARNRFLEA 232 (233)
Q Consensus 204 ~d~e~~~~~~l~~a~Lg~~dEA~~~~l~~ 232 (233)
.+.+.|....--+..+++.+.|+..|+.+
T Consensus 68 ~~~~~~~~Y~~~l~~~~d~~~aR~lfer~ 96 (280)
T PF05843_consen 68 SDPDFWLEYLDFLIKLNDINNARALFERA 96 (280)
T ss_dssp T-HHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCcHHHHHHHHHHH
Confidence 98875433333355789999999998864
No 240
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=95.03 E-value=0.16 Score=38.92 Aligned_cols=68 Identities=15% Similarity=0.094 Sum_probs=47.5
Q ss_pred HHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHHHcCCcHHHHHHHHHHHHcCCCC--HHHHHHHHHHHHHc
Q 026773 142 GSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSHFNRFEEGAEQFRIDVAQNPND--TEESIWCFLCEAQL 219 (233)
Q Consensus 142 eAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~lGryeeAi~~f~kAL~lnP~d--~e~~~~~~l~~a~L 219 (233)
..++.++++++-||++. ...+. ++..+...|++++|++.+-..++.++++ ....--+--++..+
T Consensus 6 ~~~~al~~~~a~~P~D~-----~ar~~---------lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~l 71 (90)
T PF14561_consen 6 PDIAALEAALAANPDDL-----DARYA---------LADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELL 71 (90)
T ss_dssp HHHHHHHHHHHHSTT-H-----HHHHH---------HHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHcCCCCH-----HHHHH---------HHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHc
Confidence 45788999999999998 45555 9999999999999999999999999876 22222222344455
Q ss_pred CCHH
Q 026773 220 YGVD 223 (233)
Q Consensus 220 g~~d 223 (233)
|.-+
T Consensus 72 g~~~ 75 (90)
T PF14561_consen 72 GPGD 75 (90)
T ss_dssp -TT-
T ss_pred CCCC
Confidence 5533
No 241
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=94.98 E-value=0.37 Score=41.23 Aligned_cols=85 Identities=11% Similarity=-0.019 Sum_probs=56.4
Q ss_pred CcchHHHHHHHHhcccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHH
Q 026773 103 FIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRV 182 (233)
Q Consensus 103 ~~~~a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al 182 (233)
-..+++.+.+.+. -+.|+.++.-..-|+.+...|++.+|+..++...+-.|..+. .-- -++.++
T Consensus 25 ~~~D~e~lL~ALr--vLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~------~kA--------LlA~CL 88 (160)
T PF09613_consen 25 DPDDAEALLDALR--VLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPY------AKA--------LLALCL 88 (160)
T ss_pred ChHHHHHHHHHHH--HhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChH------HHH--------HHHHHH
Confidence 3445666666666 678888888888888888888888888888887777777662 111 257777
Q ss_pred HHcCCcHHHHHHHHHHHHcCCC
Q 026773 183 SHFNRFEEGAEQFRIDVAQNPN 204 (233)
Q Consensus 183 ~~lGryeeAi~~f~kAL~lnP~ 204 (233)
+.+|+.+ =-..-+.+++-+++
T Consensus 89 ~~~~D~~-Wr~~A~evle~~~d 109 (160)
T PF09613_consen 89 YALGDPS-WRRYADEVLESGAD 109 (160)
T ss_pred HHcCChH-HHHHHHHHHhcCCC
Confidence 7777654 12223445555553
No 242
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=94.96 E-value=0.042 Score=55.17 Aligned_cols=95 Identities=13% Similarity=0.079 Sum_probs=80.0
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHHH---cCCcHHHHHHHHH
Q 026773 121 SREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSH---FNRFEEGAEQFRI 197 (233)
Q Consensus 121 P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~---lGryeeAi~~f~k 197 (233)
|.+++-+..-|.--++.+...+||.+|.+|++--|... +.+. +|+.++.+ -|+.-.|+.|...
T Consensus 371 ~e~ie~~~~egnd~ly~~~~~~~i~~~s~a~q~~~~~~------~~l~--------nraa~lmkRkW~~d~~~AlrDch~ 436 (758)
T KOG1310|consen 371 PENIEKFKTEGNDGLYESIVSGAISHYSRAIQYVPDAI------YLLE--------NRAAALMKRKWRGDSYLALRDCHV 436 (758)
T ss_pred hHHHHHHHhhccchhhhHHHHHHHHHHHHHhhhccchh------HHHH--------hHHHHHHhhhccccHHHHHHhHHh
Confidence 56677777788878888899999999999999999776 4444 57666654 4677889999999
Q ss_pred HHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 026773 198 DVAQNPNDTEESIWCFLCEAQLYGVDEARNRF 229 (233)
Q Consensus 198 AL~lnP~d~e~~~~~~l~~a~Lg~~dEA~~~~ 229 (233)
|+++||..-.+++|++-|+.+++++.||+..-
T Consensus 437 Alrln~s~~kah~~la~aL~el~r~~eal~~~ 468 (758)
T KOG1310|consen 437 ALRLNPSIQKAHFRLARALNELTRYLEALSCH 468 (758)
T ss_pred hccCChHHHHHHHHHHHHHHHHhhHHHhhhhH
Confidence 99999999999999999999999999998753
No 243
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.95 E-value=0.036 Score=51.70 Aligned_cols=71 Identities=17% Similarity=0.304 Sum_probs=60.7
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHHHcCCcHHHHHHHHHHHHc
Q 026773 122 REAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSHFNRFEEGAEQFRIDVAQ 201 (233)
Q Consensus 122 ~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~lGryeeAi~~f~kAL~l 201 (233)
++.-++.+...++.-++||.+|...|++.++.||.++ .+. +++++++.++|+..+|++..+.++++
T Consensus 250 ~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~-----~a~---------NnKALcllYlg~l~DAiK~~e~~~~~ 315 (366)
T KOG2796|consen 250 GKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNA-----VAN---------NNKALCLLYLGKLKDALKQLEAMVQQ 315 (366)
T ss_pred hhHHHHhhhhhheecccchHHHHHHHhhccccCCCch-----hhh---------chHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 3445566666777778999999999999999999998 343 46999999999999999999999999
Q ss_pred CCCCH
Q 026773 202 NPNDT 206 (233)
Q Consensus 202 nP~d~ 206 (233)
.|...
T Consensus 316 ~P~~~ 320 (366)
T KOG2796|consen 316 DPRHY 320 (366)
T ss_pred CCccc
Confidence 99753
No 244
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=94.93 E-value=0.059 Score=52.96 Aligned_cols=96 Identities=8% Similarity=-0.082 Sum_probs=70.9
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC----CCCCCCccchhhhhhhhhhhhhhhHHHHHHcCCcHHHHHHHHHH
Q 026773 123 EAVVAIRRGMLLFRQGDVVGSVAEFDKAIELD----PRQKISGKGAYRFTISIVGIILKKLIRVSHFNRFEEGAEQFRID 198 (233)
Q Consensus 123 ~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLd----P~~~~~~~~~y~~~~~~~~a~~~rG~al~~lGryeeAi~~f~kA 198 (233)
.-.|+.++|.++..+|+++-|++.|.+++.|. -+-. .. -..+.+|.+|+.+.+++.||..+.+-
T Consensus 234 eRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~v-----EA-------QscYSLgNtytll~e~~kAI~Yh~rH 301 (639)
T KOG1130|consen 234 ERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTV-----EA-------QSCYSLGNTYTLLKEVQKAITYHQRH 301 (639)
T ss_pred HHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhH-----HH-------HHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 35789999999999999999999999876554 3222 11 12456999999999999999999987
Q ss_pred HHcCCC------CHHHHHHHHHHHHHcCCHHHHHHHHH
Q 026773 199 VAQNPN------DTEESIWCFLCEAQLYGVDEARNRFL 230 (233)
Q Consensus 199 L~lnP~------d~e~~~~~~l~~a~Lg~~dEA~~~~l 230 (233)
+++.-+ ...++.-++.++..+|..+.|....+
T Consensus 302 LaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae 339 (639)
T KOG1130|consen 302 LAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAE 339 (639)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 766432 22233335677888999888876543
No 245
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=94.86 E-value=0.47 Score=39.62 Aligned_cols=103 Identities=14% Similarity=0.070 Sum_probs=64.0
Q ss_pred HHHHHHHHH--HHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhh-hhhhhhhHHHHHHcCCcHHHHHHHHHHHH-
Q 026773 125 VVAIRRGML--LFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISI-VGIILKKLIRVSHFNRFEEGAEQFRIDVA- 200 (233)
Q Consensus 125 ~Ay~~RG~a--~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~-~~a~~~rG~al~~lGryeeAi~~f~kAL~- 200 (233)
.+|..++.. ...-|-|++|.+.+.+|++..-.-|. ...+-...+ .=.+..+.-++..+|+|+|++..-+++|.
T Consensus 8 ~aY~aLs~ae~ql~~g~~~eAa~s~r~AM~~srtiP~---eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~Y 84 (144)
T PF12968_consen 8 MAYMALSDAERQLQDGAYEEAAASCRKAMEVSRTIPA---EEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRY 84 (144)
T ss_dssp HHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-T---TS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccCCh---HhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHH
Confidence 455555444 45679999999999999998765542 011111000 00122467788899999999988888775
Q ss_pred ------cCCCCHHHHHHH------HHHHHHcCCHHHHHHHHHhh
Q 026773 201 ------QNPNDTEESIWC------FLCEAQLYGVDEARNRFLEA 232 (233)
Q Consensus 201 ------lnP~d~e~~~~~------~l~~a~Lg~~dEA~~~~l~~ 232 (233)
++.+ +...|. +.++..+|+.+||...|..+
T Consensus 85 FNRRGEL~qd--eGklWIaaVfsra~Al~~~Gr~~eA~~~fr~a 126 (144)
T PF12968_consen 85 FNRRGELHQD--EGKLWIAAVFSRAVALEGLGRKEEALKEFRMA 126 (144)
T ss_dssp HHHH--TTST--HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred Hhhccccccc--cchhHHHHHHHHHHHHHhcCChHHHHHHHHHH
Confidence 4444 334454 45667899999999988653
No 246
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=94.86 E-value=0.31 Score=37.31 Aligned_cols=41 Identities=12% Similarity=0.112 Sum_probs=36.4
Q ss_pred cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCC
Q 026773 118 NNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQK 158 (233)
Q Consensus 118 ~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~ 158 (233)
+.+|+|.++.+.++..+...|++++|++.+-..++.+|++.
T Consensus 16 a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~ 56 (90)
T PF14561_consen 16 AANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYE 56 (90)
T ss_dssp HHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCC
T ss_pred HcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccc
Confidence 78999999999999999999999999999999999999875
No 247
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=94.57 E-value=0.053 Score=49.62 Aligned_cols=56 Identities=16% Similarity=0.222 Sum_probs=51.5
Q ss_pred ccCcchHHHHHHHHhcccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCC
Q 026773 101 RLFIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQK 158 (233)
Q Consensus 101 ~~~~~~a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~ 158 (233)
.+-.+.+.++|++++ ++.|..+..|+..|...-..|+++.|.+.|++.+++||.+-
T Consensus 8 ~~D~~aaaely~qal--~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~ 63 (287)
T COG4976 8 SGDAEAAAELYNQAL--ELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDH 63 (287)
T ss_pred cCChHHHHHHHHHHh--hcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCcccc
Confidence 344577889999999 89999999999999999999999999999999999999875
No 248
>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=94.39 E-value=0.39 Score=46.66 Aligned_cols=99 Identities=15% Similarity=0.090 Sum_probs=73.1
Q ss_pred CcchHHHHHHHHhcccCCCCCHHHHHHHHHHHHHcCC--HHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHH
Q 026773 103 FIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGD--VVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLI 180 (233)
Q Consensus 103 ~~~~a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~lGd--yeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~ 180 (233)
.++...+.-..++ +.+|++..+|+.|-.++...+. +..=++..++++++||++.- +..+ |=.
T Consensus 90 ~ld~eL~~~~~~L--~~npksY~aW~hR~w~L~~~p~~~~~~EL~lcek~L~~D~RNfh----~W~Y----------RRf 153 (421)
T KOG0529|consen 90 LLDEELKYVESAL--KVNPKSYGAWHHRKWVLQKNPHSDWNTELQLCEKALKQDPRNFH----AWHY----------RRF 153 (421)
T ss_pred hhHHHHHHHHHHH--HhCchhHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCccccc----chHH----------HHH
Confidence 4555555666666 8999999999999999998774 58889999999999999982 2222 344
Q ss_pred HHHHcCC----cHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Q 026773 181 RVSHFNR----FEEGAEQFRIDVAQNPNDTEESIWCFLCEA 217 (233)
Q Consensus 181 al~~lGr----yeeAi~~f~kAL~lnP~d~e~~~~~~l~~a 217 (233)
+.-...+ ..+=++..+++|.-|+.|..+|.++...+.
T Consensus 154 V~~~~~~~~~~~~~El~ftt~~I~~nfSNYsaWhyRs~lL~ 194 (421)
T KOG0529|consen 154 VVEQAERSRNLEKEELEFTTKLINDNFSNYSAWHYRSLLLS 194 (421)
T ss_pred HHHHHhcccccchhHHHHHHHHHhccchhhhHHHHHHHHHH
Confidence 4433333 466677788899999988887777755444
No 249
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.10 E-value=0.63 Score=43.29 Aligned_cols=111 Identities=14% Similarity=0.155 Sum_probs=79.5
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCC-----------Cccch----hh-hh------hhhhhhhhhh
Q 026773 121 SREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKI-----------SGKGA----YR-FT------ISIVGIILKK 178 (233)
Q Consensus 121 P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~-----------~~~~~----y~-~~------~~~~~a~~~r 178 (233)
-.+-++...--.++.++-+.+-|.....++.++|-+... .|+.. ++ +. ..--...+..
T Consensus 134 ~~~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~ided~tLtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~ 213 (299)
T KOG3081|consen 134 GENLEAAALNVQILLKMHRFDLAEKELKKMQQIDEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQ 213 (299)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccH
Confidence 355566666666777777777777777777777754321 00000 00 00 0013456679
Q ss_pred HHHHHHcCCcHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHh
Q 026773 179 LIRVSHFNRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLE 231 (233)
Q Consensus 179 G~al~~lGryeeAi~~f~kAL~lnP~d~e~~~~~~l~~a~Lg~~dEA~~~~l~ 231 (233)
+.+...+|||+||....+.++..++++++...+.--|-..+|...++..+++.
T Consensus 214 Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~l~ 266 (299)
T KOG3081|consen 214 AVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTERNLS 266 (299)
T ss_pred HHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHHHHHH
Confidence 99999999999999999999999999999988888777789988888887764
No 250
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=93.81 E-value=0.6 Score=46.75 Aligned_cols=106 Identities=17% Similarity=0.101 Sum_probs=80.9
Q ss_pred HHHHHHHHhcccCCC----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHH-
Q 026773 107 VSGIWDALTGGNNNS----REAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIR- 181 (233)
Q Consensus 107 a~~i~~~~i~~~l~P----~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~a- 181 (233)
..++|..++ ++=| ..+..|...+.-..++.+..+|-...-.||-..|++. .+ +|-+
T Consensus 385 tr~vyq~~l--~lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~K------lF-----------k~YIe 445 (677)
T KOG1915|consen 385 TRQVYQACL--DLIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDK------LF-----------KGYIE 445 (677)
T ss_pred HHHHHHHHH--hhcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchh------HH-----------HHHHH
Confidence 445555555 5556 4678888888888999999999999999999999876 22 3433
Q ss_pred -HHHcCCcHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHh
Q 026773 182 -VSHFNRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLE 231 (233)
Q Consensus 182 -l~~lGryeeAi~~f~kAL~lnP~d~e~~~~~~l~~a~Lg~~dEA~~~~l~ 231 (233)
-..+++++.+.+.|++-|+-+|.+-..|.-.+-.+..||+.|.|+..|.-
T Consensus 446 lElqL~efDRcRkLYEkfle~~Pe~c~~W~kyaElE~~LgdtdRaRaifel 496 (677)
T KOG1915|consen 446 LELQLREFDRCRKLYEKFLEFSPENCYAWSKYAELETSLGDTDRARAIFEL 496 (677)
T ss_pred HHHHHhhHHHHHHHHHHHHhcChHhhHHHHHHHHHHHHhhhHHHHHHHHHH
Confidence 45678999999999999999998765433334445689999999988753
No 251
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=93.55 E-value=1.5 Score=40.51 Aligned_cols=98 Identities=12% Similarity=0.135 Sum_probs=66.6
Q ss_pred cCCCCCHHHHHHHHHHHHHcCC------------HHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHHHc
Q 026773 118 NNNSREAVVAIRRGMLLFRQGD------------VVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSHF 185 (233)
Q Consensus 118 ~l~P~~a~Ay~~RG~a~~~lGd------------yeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~l 185 (233)
+.+|.|.++|..+-...-..-. .+.-+..++|||+.+|++. .. +. .|+..| ...
T Consensus 13 ~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~-----~L-~l-----~~l~~~---~~~ 78 (321)
T PF08424_consen 13 RENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSE-----RL-LL-----GYLEEG---EKV 78 (321)
T ss_pred HhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCH-----HH-HH-----HHHHHH---HHh
Confidence 6788888888887665544322 5678899999999999776 33 22 233333 355
Q ss_pred CCcHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcC-----CHHHHHHHHHh
Q 026773 186 NRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQLY-----GVDEARNRFLE 231 (233)
Q Consensus 186 GryeeAi~~f~kAL~lnP~d~e~~~~~~l~~a~Lg-----~~dEA~~~~l~ 231 (233)
.+-++..+-+++++..+|++.. +|.......++ .+++-+..|.+
T Consensus 79 ~~~~~l~~~we~~l~~~~~~~~--LW~~yL~~~q~~~~~f~v~~~~~~y~~ 127 (321)
T PF08424_consen 79 WDSEKLAKKWEELLFKNPGSPE--LWREYLDFRQSNFASFTVSDVRDVYEK 127 (321)
T ss_pred CCHHHHHHHHHHHHHHCCCChH--HHHHHHHHHHHHhccCcHHHHHHHHHH
Confidence 6888889999999999999876 66654433333 45566555543
No 252
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=93.24 E-value=0.12 Score=34.08 Aligned_cols=30 Identities=10% Similarity=0.007 Sum_probs=26.9
Q ss_pred hhhhhhHHHHHHcCCcHHHHHHHHHHHHcC
Q 026773 173 GIILKKLIRVSHFNRFEEGAEQFRIDVAQN 202 (233)
Q Consensus 173 ~a~~~rG~al~~lGryeeAi~~f~kAL~ln 202 (233)
+++..+|-+-...++|++|+++|.+++++.
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i~ 31 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALEIQ 31 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence 466779999999999999999999999873
No 253
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=92.72 E-value=0.38 Score=31.16 Aligned_cols=34 Identities=9% Similarity=0.077 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHH--HHHHHhhCCCC
Q 026773 124 AVVAIRRGMLLFRQGDVVGSVAE--FDKAIELDPRQ 157 (233)
Q Consensus 124 a~Ay~~RG~a~~~lGdyeeAIad--fdkAIeLdP~~ 157 (233)
++.++..|..+..+|++++|+.. |.-+..++|.+
T Consensus 1 ~e~~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~n 36 (36)
T PF07720_consen 1 PEYLYGLAYNFYQKGKYDEAIHFFQYAFLCALDKYN 36 (36)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT-
T ss_pred CcHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhcccC
Confidence 36678899999999999999999 44999999864
No 254
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=92.66 E-value=0.96 Score=45.18 Aligned_cols=113 Identities=12% Similarity=-0.012 Sum_probs=72.4
Q ss_pred ccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCC-------Cccchhhhh--h--hhhhhhhhhHHHHHHc
Q 026773 117 GNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKI-------SGKGAYRFT--I--SIVGIILKKLIRVSHF 185 (233)
Q Consensus 117 ~~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~-------~~~~~y~~~--~--~~~~a~~~rG~al~~l 185 (233)
++++|+.++||..++--. ..-..||.+.|.||++.....-. .|.....+. + -.+.+-..++.+.-++
T Consensus 195 Lei~pdCAdAYILLAEEe--A~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~e~~~~Rdt~~~~y~KrRLAmCarkl 272 (539)
T PF04184_consen 195 LEINPDCADAYILLAEEE--ASTIVEAEELLRQAVKAGEASLGKSQFLQHHGHFWEAWHRRDTNVLVYAKRRLAMCARKL 272 (539)
T ss_pred HHhhhhhhHHHhhccccc--ccCHHHHHHHHHHHHHHHHHhhchhhhhhcccchhhhhhccccchhhhhHHHHHHHHHHh
Confidence 389999999998876422 23456777777777766543320 000000000 0 0122334567778899
Q ss_pred CCcHHHHHHHHHHHHcCCCCHH--HHHHHHHHHHHcCCHHHHHHHHHh
Q 026773 186 NRFEEGAEQFRIDVAQNPNDTE--ESIWCFLCEAQLYGVDEARNRFLE 231 (233)
Q Consensus 186 GryeeAi~~f~kAL~lnP~d~e--~~~~~~l~~a~Lg~~dEA~~~~l~ 231 (233)
|+.+||++.|+..++.+|.+.. .+.++--|+..++++.|+...+.+
T Consensus 273 Gr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~k 320 (539)
T PF04184_consen 273 GRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAK 320 (539)
T ss_pred CChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 9999999999999998886422 334555677788999998876643
No 255
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=92.59 E-value=0.15 Score=30.13 Aligned_cols=26 Identities=15% Similarity=0.124 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHH
Q 026773 124 AVVAIRRGMLLFRQGDVVGSVAEFDK 149 (233)
Q Consensus 124 a~Ay~~RG~a~~~lGdyeeAIadfdk 149 (233)
|.+.+.+|.++..+||+++|.+.+++
T Consensus 1 ~~a~~~la~~~~~~G~~~eA~~~l~~ 26 (26)
T PF07721_consen 1 PRARLALARALLAQGDPDEAERLLRR 26 (26)
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHhC
Confidence 45788999999999999999998763
No 256
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=92.12 E-value=3 Score=35.72 Aligned_cols=84 Identities=15% Similarity=0.013 Sum_probs=73.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHHHcCCcHHHHHHHHHHHHcCCC
Q 026773 125 VVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSHFNRFEEGAEQFRIDVAQNPN 204 (233)
Q Consensus 125 ~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~lGryeeAi~~f~kAL~lnP~ 204 (233)
.++....++-...++.+++...++..--+.|+.+ ..-.. -|..+...|++.+|+..|+...+-.|.
T Consensus 11 ~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~-----e~~~~---------~~~l~i~r~~w~dA~rlLr~l~~~~~~ 76 (160)
T PF09613_consen 11 GGLIEVLSVALRLGDPDDAEALLDALRVLRPEFP-----ELDLF---------DGWLHIVRGDWDDALRLLRELEERAPG 76 (160)
T ss_pred HHHHHHHHHHHccCChHHHHHHHHHHHHhCCCch-----HHHHH---------HHHHHHHhCCHHHHHHHHHHHhccCCC
Confidence 4566777777888999999999999999999998 34333 799999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHcCCH
Q 026773 205 DTEESIWCFLCEAQLYGV 222 (233)
Q Consensus 205 d~e~~~~~~l~~a~Lg~~ 222 (233)
.+.......+|+..+|+.
T Consensus 77 ~p~~kALlA~CL~~~~D~ 94 (160)
T PF09613_consen 77 FPYAKALLALCLYALGDP 94 (160)
T ss_pred ChHHHHHHHHHHHHcCCh
Confidence 998888889999988876
No 257
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=92.11 E-value=1.6 Score=40.91 Aligned_cols=86 Identities=13% Similarity=0.105 Sum_probs=66.4
Q ss_pred CcchHHHHHHHHhcccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH---------------------------------
Q 026773 103 FIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDK--------------------------------- 149 (233)
Q Consensus 103 ~~~~a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdk--------------------------------- 149 (233)
-...+..+++.+. +.+|+++++-..++.++...|+.++|-+.++.
T Consensus 149 ~~~~a~~~~~~al--~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~~~~~l~ 226 (304)
T COG3118 149 DFGEAAPLLKQAL--QAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATPEIQDLQ 226 (304)
T ss_pred chhhHHHHHHHHH--HhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCCCHHHHH
Confidence 3456677777777 88999999999999999999999887766554
Q ss_pred -HHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHHHcCCcHHHHHHHHHHHHcCCC
Q 026773 150 -AIELDPRQKISGKGAYRFTISIVGIILKKLIRVSHFNRFEEGAEQFRIDVAQNPN 204 (233)
Q Consensus 150 -AIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~lGryeeAi~~f~kAL~lnP~ 204 (233)
.+.-||++. ++-+..+..+...||.++|++.+-..++.|-+
T Consensus 227 ~~~aadPdd~--------------~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~ 268 (304)
T COG3118 227 RRLAADPDDV--------------EAALALADQLHLVGRNEAALEHLLALLRRDRG 268 (304)
T ss_pred HHHHhCCCCH--------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHhccc
Confidence 122244444 34446999999999999999999888887654
No 258
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=92.02 E-value=0.24 Score=45.58 Aligned_cols=53 Identities=13% Similarity=0.138 Sum_probs=45.2
Q ss_pred cchHHHHHHHHhcccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCC
Q 026773 104 IPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQK 158 (233)
Q Consensus 104 ~~~a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~ 158 (233)
++.|...-+.++ .++|+++..+--||.+|.++|.+..|++|++..++.-|+.+
T Consensus 197 ~~~al~~~~r~l--~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~ 249 (269)
T COG2912 197 WELALRVAERLL--DLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDP 249 (269)
T ss_pred hHHHHHHHHHHH--hhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCch
Confidence 333444444445 79999999999999999999999999999999999999988
No 259
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=91.99 E-value=1.2 Score=37.82 Aligned_cols=78 Identities=9% Similarity=0.139 Sum_probs=61.0
Q ss_pred CHHHHHHHHHHHHHc---CCHHHHHHHHHHHHh-hCCCCCCCccchhhhhhhhhhhhhhhHHHHHHcCCcHHHHHHHHHH
Q 026773 123 EAVVAIRRGMLLFRQ---GDVVGSVAEFDKAIE-LDPRQKISGKGAYRFTISIVGIILKKLIRVSHFNRFEEGAEQFRID 198 (233)
Q Consensus 123 ~a~Ay~~RG~a~~~l---GdyeeAIadfdkAIe-LdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~lGryeeAi~~f~kA 198 (233)
....-+++++++... .|..+.|..++..++ -.|... ..+.+. ++..++++++|+.|+...+..
T Consensus 31 s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~r----Re~lyY---------LAvg~yRlkeY~~s~~yvd~l 97 (149)
T KOG3364|consen 31 SKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERR----RECLYY---------LAVGHYRLKEYSKSLRYVDAL 97 (149)
T ss_pred hHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccc----hhhhhh---------hHHHHHHHhhHHHHHHHHHHH
Confidence 345667777777765 467789999999997 445443 245555 899999999999999999999
Q ss_pred HHcCCCCHHHHHHHH
Q 026773 199 VAQNPNDTEESIWCF 213 (233)
Q Consensus 199 L~lnP~d~e~~~~~~ 213 (233)
++.+|++.++.-...
T Consensus 98 l~~e~~n~Qa~~Lk~ 112 (149)
T KOG3364|consen 98 LETEPNNRQALELKE 112 (149)
T ss_pred HhhCCCcHHHHHHHH
Confidence 999999998754443
No 260
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=91.75 E-value=2.1 Score=40.52 Aligned_cols=94 Identities=12% Similarity=0.185 Sum_probs=72.4
Q ss_pred cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-----hCCCCC------CCccchhhhh---h-hhhhhhhhhHHHH
Q 026773 118 NNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIE-----LDPRQK------ISGKGAYRFT---I-SIVGIILKKLIRV 182 (233)
Q Consensus 118 ~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIe-----LdP~~~------~~~~~~y~~~---~-~~~~a~~~rG~al 182 (233)
+.+|-+.+++.+++.++.++||++.|-+..+|||= +.|.+. ..|++..-+. | .+.-++......+
T Consensus 34 ~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i~~L 113 (360)
T PF04910_consen 34 QKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYIQSL 113 (360)
T ss_pred HHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHHHHH
Confidence 68999999999999999999999999999999963 234331 0122221110 1 4466778888999
Q ss_pred HHcCCcHHHHHHHHHHHHcCCC-CHHHHHH
Q 026773 183 SHFNRFEEGAEQFRIDVAQNPN-DTEESIW 211 (233)
Q Consensus 183 ~~lGryeeAi~~f~kAL~lnP~-d~e~~~~ 211 (233)
.+.|-+..|++...-.+.+||. ||-....
T Consensus 114 ~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll 143 (360)
T PF04910_consen 114 GRRGCWRTALEWCKLLLSLDPDEDPLGVLL 143 (360)
T ss_pred HhcCcHHHHHHHHHHHHhcCCCCCcchhHH
Confidence 9999999999999999999999 8866433
No 261
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=91.61 E-value=1.5 Score=42.08 Aligned_cols=99 Identities=15% Similarity=0.121 Sum_probs=64.0
Q ss_pred CCCCHHHHHHHHHHHHH---cCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHH---HHcCCcHHHHH
Q 026773 120 NSREAVVAIRRGMLLFR---QGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRV---SHFNRFEEGAE 193 (233)
Q Consensus 120 ~P~~a~Ay~~RG~a~~~---lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al---~~lGryeeAi~ 193 (233)
-++...+-...|.++.+ .||.++|+..+..++.-+.... +..+. +.|.+++.-..- -.....++|++
T Consensus 175 ~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~-----~d~~g--L~GRIyKD~~~~s~~~d~~~ldkAi~ 247 (374)
T PF13281_consen 175 VANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPD-----PDTLG--LLGRIYKDLFLESNFTDRESLDKAIE 247 (374)
T ss_pred hhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCC-----hHHHH--HHHHHHHHHHHHcCccchHHHHHHHH
Confidence 34577888899999999 9999999999999666554433 23332 222222222221 12335789999
Q ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHH
Q 026773 194 QFRIDVAQNPNDTEESIWCFLCEAQLYGVDEAR 226 (233)
Q Consensus 194 ~f~kAL~lnP~d~e~~~~~~l~~a~Lg~~dEA~ 226 (233)
+|.++.+++|+.. .-++...++...|...+..
T Consensus 248 ~Y~kgFe~~~~~Y-~GIN~AtLL~~~g~~~~~~ 279 (374)
T PF13281_consen 248 WYRKGFEIEPDYY-SGINAATLLMLAGHDFETS 279 (374)
T ss_pred HHHHHHcCCcccc-chHHHHHHHHHcCCcccch
Confidence 9999999998643 3355555555555444433
No 262
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=91.48 E-value=1.1 Score=39.47 Aligned_cols=75 Identities=13% Similarity=0.159 Sum_probs=54.8
Q ss_pred CCHHHHHHHHHHHHHcCC-------HHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHHHcCCcHHHHHH
Q 026773 122 REAVVAIRRGMLLFRQGD-------VVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSHFNRFEEGAEQ 194 (233)
Q Consensus 122 ~~a~Ay~~RG~a~~~lGd-------yeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~lGryeeAi~~ 194 (233)
.-+..+...++++-.+|+ +..|+..|++|++-+..-. .|. .-..+++-.|....++|++++|+.+
T Consensus 116 ~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~-~~~-------~~~~l~YLigeL~rrlg~~~eA~~~ 187 (214)
T PF09986_consen 116 KKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPI-EGM-------DEATLLYLIGELNRRLGNYDEAKRW 187 (214)
T ss_pred HHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCC-CCc-------hHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 347788888899999999 4558888888887775411 000 1123455689999999999999999
Q ss_pred HHHHHHcCCC
Q 026773 195 FRIDVAQNPN 204 (233)
Q Consensus 195 f~kAL~lnP~ 204 (233)
|.+++...-.
T Consensus 188 fs~vi~~~~~ 197 (214)
T PF09986_consen 188 FSRVIGSKKA 197 (214)
T ss_pred HHHHHcCCCC
Confidence 9999985443
No 263
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=91.44 E-value=1.3 Score=44.44 Aligned_cols=49 Identities=12% Similarity=0.266 Sum_probs=22.2
Q ss_pred HHHHHHHHhcccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 026773 107 VSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQ 157 (233)
Q Consensus 107 a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~ 157 (233)
|.++|..++ ..+..+...|...+-.-+.......|-..+|+|+.+=|+.
T Consensus 92 ARSv~ERAL--dvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRV 140 (677)
T KOG1915|consen 92 ARSVFERAL--DVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRV 140 (677)
T ss_pred HHHHHHHHH--hcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchH
Confidence 334444444 3444444444444444444444444444444444444443
No 264
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=91.36 E-value=3.1 Score=39.98 Aligned_cols=64 Identities=11% Similarity=0.025 Sum_probs=48.4
Q ss_pred chhHHHh---ccCcchHHHHHHHHhcccCCCCCHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHhhCCCCC
Q 026773 94 RAPTFTR---RLFIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQ---------GDVVGSVAEFDKAIELDPRQK 158 (233)
Q Consensus 94 ~~~~~~r---~~~~~~a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~l---------GdyeeAIadfdkAIeLdP~~~ 158 (233)
.+-+++| .+--+.|..++..++. ...+.+++.+...|.+|-.. ...++||+.|.|+.+++|+..
T Consensus 185 yafALnRrn~~gdre~Al~il~~~l~-~~~~~~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~Y 260 (374)
T PF13281_consen 185 YAFALNRRNKPGDREKALQILLPVLE-SDENPDPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDYY 260 (374)
T ss_pred HHHHHhhcccCCCHHHHHHHHHHHHh-ccCCCChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCcccc
Confidence 4556777 4455678888877431 57789999999999998432 247889999999999998654
No 265
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=91.32 E-value=0.9 Score=44.27 Aligned_cols=81 Identities=14% Similarity=0.134 Sum_probs=64.7
Q ss_pred cCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHHHcCCcHHHHHHHHHHHHcCCCCHHHH---HH-H
Q 026773 137 QGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSHFNRFEEGAEQFRIDVAQNPNDTEES---IW-C 212 (233)
Q Consensus 137 lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~lGryeeAi~~f~kAL~lnP~d~e~~---~~-~ 212 (233)
..+.+.|.+..++..+.-|+.+ -+.+. .|..+...|+.++|++.|++++.....-++.. +| +
T Consensus 246 ~~~~~~a~~lL~~~~~~yP~s~-----lfl~~---------~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El 311 (468)
T PF10300_consen 246 DVPLEEAEELLEEMLKRYPNSA-----LFLFF---------EGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFEL 311 (468)
T ss_pred CCCHHHHHHHHHHHHHhCCCcH-----HHHHH---------HHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHH
Confidence 4577889999999999999877 34444 89999999999999999999996554433332 23 4
Q ss_pred HHHHHHcCCHHHHHHHHHh
Q 026773 213 FLCEAQLYGVDEARNRFLE 231 (233)
Q Consensus 213 ~l~~a~Lg~~dEA~~~~l~ 231 (233)
+.|...++++++|...|..
T Consensus 312 ~w~~~~~~~w~~A~~~f~~ 330 (468)
T PF10300_consen 312 AWCHMFQHDWEEAAEYFLR 330 (468)
T ss_pred HHHHHHHchHHHHHHHHHH
Confidence 6788899999999998875
No 266
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=91.17 E-value=3.5 Score=35.16 Aligned_cols=51 Identities=14% Similarity=0.145 Sum_probs=28.5
Q ss_pred hHHHHHHHHhcccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCC
Q 026773 106 SVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQK 158 (233)
Q Consensus 106 ~a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~ 158 (233)
+++.+.+.+- -+.|+.++.-..-|+.+...|++++|+..++...+-.|..+
T Consensus 28 D~e~lLdALr--vLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p 78 (153)
T TIGR02561 28 DAQAMLDALR--VLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPP 78 (153)
T ss_pred HHHHHHHHHH--HhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCch
Confidence 3344444443 45566666666666666666666666666666555555444
No 267
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=91.13 E-value=1 Score=40.08 Aligned_cols=90 Identities=9% Similarity=0.042 Sum_probs=59.1
Q ss_pred CcchHHHHHHHHhcccCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHH
Q 026773 103 FIPSVSGIWDALTGGNNNSR-EAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIR 181 (233)
Q Consensus 103 ~~~~a~~i~~~~i~~~l~P~-~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~a 181 (233)
-...|+.....+++...|.+ -+-+-.+++.+++.+|.+++|+...+..-+ +... +... --||-+
T Consensus 104 ~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~--~~w~-----~~~~--------elrGDi 168 (207)
T COG2976 104 NLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKE--ESWA-----AIVA--------ELRGDI 168 (207)
T ss_pred cHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcccc--ccHH-----HHHH--------HHhhhH
Confidence 33445555554442211211 234567889999999999999988775322 1111 1111 148999
Q ss_pred HHHcCCcHHHHHHHHHHHHcCCCCHH
Q 026773 182 VSHFNRFEEGAEQFRIDVAQNPNDTE 207 (233)
Q Consensus 182 l~~lGryeeAi~~f~kAL~lnP~d~e 207 (233)
+...|+-++|.+.|.++++.+++++.
T Consensus 169 ll~kg~k~~Ar~ay~kAl~~~~s~~~ 194 (207)
T COG2976 169 LLAKGDKQEARAAYEKALESDASPAA 194 (207)
T ss_pred HHHcCchHHHHHHHHHHHHccCChHH
Confidence 99999999999999999999876654
No 268
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=91.01 E-value=1.1 Score=45.41 Aligned_cols=83 Identities=13% Similarity=0.019 Sum_probs=69.3
Q ss_pred cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH-HHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHHHcCCcHHHHHHHH
Q 026773 118 NNNSREAVVAIRRGMLLFRQGDVVGSVAEFDK-AIELDPRQKISGKGAYRFTISIVGIILKKLIRVSHFNRFEEGAEQFR 196 (233)
Q Consensus 118 ~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdk-AIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~lGryeeAi~~f~ 196 (233)
..||+++.++.++|.+..+.|....++.++.. |.++.|++. .+... .-.++..|..+..+|+.+++.....
T Consensus 95 ~~~~~~~~~~~~L~~ale~~~~~~~~~~~~~~~a~~~~~~~~-----~~~~~---~~~~~~~~~~~~~l~~~~~~~~~l~ 166 (620)
T COG3914 95 SVNPENCPAVQNLAAALELDGLQFLALADISEIAEWLSPDNA-----EFLGH---LIRFYQLGRYLKLLGRTAEAELALE 166 (620)
T ss_pred hcCcccchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcchH-----HHHhh---HHHHHHHHHHHHHhccHHHHHHHHH
Confidence 78999999999999999999999999888888 999999987 33322 1112225888999999999999999
Q ss_pred HHHHcCCCCHHH
Q 026773 197 IDVAQNPNDTEE 208 (233)
Q Consensus 197 kAL~lnP~d~e~ 208 (233)
++.++.|.+++.
T Consensus 167 ~~~d~~p~~~~~ 178 (620)
T COG3914 167 RAVDLLPKYPRV 178 (620)
T ss_pred HHHHhhhhhhhh
Confidence 999999998764
No 269
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=90.85 E-value=1 Score=47.53 Aligned_cols=81 Identities=14% Similarity=0.124 Sum_probs=67.5
Q ss_pred cCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHHHcCCcHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Q 026773 137 QGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSHFNRFEEGAEQFRIDVAQNPNDTEESIWCFLCE 216 (233)
Q Consensus 137 lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~lGryeeAi~~f~kAL~lnP~d~e~~~~~~l~~ 216 (233)
.+++..|+++.++.++--|+-. +. ..-.|.++.++|+++||..+++..-...++|....-..-.|+
T Consensus 22 ~~qfkkal~~~~kllkk~Pn~~------~a--------~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y 87 (932)
T KOG2053|consen 22 SSQFKKALAKLGKLLKKHPNAL------YA--------KVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVY 87 (932)
T ss_pred hHHHHHHHHHHHHHHHHCCCcH------HH--------HHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHH
Confidence 4689999999999999999887 32 234899999999999999888877777777766555566899
Q ss_pred HHcCCHHHHHHHHHh
Q 026773 217 AQLYGVDEARNRFLE 231 (233)
Q Consensus 217 a~Lg~~dEA~~~~l~ 231 (233)
..+|..|+|...++.
T Consensus 88 ~d~~~~d~~~~~Ye~ 102 (932)
T KOG2053|consen 88 RDLGKLDEAVHLYER 102 (932)
T ss_pred HHHhhhhHHHHHHHH
Confidence 999999999988765
No 270
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=90.76 E-value=5.1 Score=37.54 Aligned_cols=149 Identities=11% Similarity=0.075 Sum_probs=107.9
Q ss_pred HhhhhccCCcchhhccccccccccccccccchh---H-HHhccCcchHHHHHHHHhcccCCCCCHHHHHHHHHHHHH-cC
Q 026773 64 RSLLTSKAPLSVQTHINSLFSTPRGHYLQNRAP---T-FTRRLFIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFR-QG 138 (233)
Q Consensus 64 ~~~~~~~~~~~~~~~~n~~~~~~~~h~~~~~~~---~-~~r~~~~~~a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~-lG 138 (233)
|.--.-+.|+.+...-||+-....-..+.+..+ + +.+.-..|.|..+-..+| .+||.+--+|.-|=.++-. ..
T Consensus 15 ~~dw~Dv~PlpqdDg~npvv~I~Yte~fr~~m~YfRAI~~~~E~S~RAl~LT~d~i--~lNpAnYTVW~yRr~iL~~l~~ 92 (318)
T KOG0530|consen 15 RYDWSDVTPLPQDDGPNPVVKIAYTEDFRDVMDYFRAIIAKNEKSPRALQLTEDAI--RLNPANYTVWQYRRVILRHLMS 92 (318)
T ss_pred hcccccCccCCCCCCCCcceEeeechhHHHHHHHHHHHHhccccCHHHHHHHHHHH--HhCcccchHHHHHHHHHHHhHH
Confidence 344456788888888888876666555554422 1 223336778888888888 8999999999888777654 55
Q ss_pred CHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHHHcCCcH-HHHHHHHHHHHcCCCCHHHHHHHHHHHH
Q 026773 139 DVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSHFNRFE-EGAEQFRIDVAQNPNDTEESIWCFLCEA 217 (233)
Q Consensus 139 dyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~lGrye-eAi~~f~kAL~lnP~d~e~~~~~~l~~a 217 (233)
|..+=++..+..++-+|++. .. |. -|-.+.-.+|++. .=++....++..|..+..+|-.+--|..
T Consensus 93 dL~~El~~l~eI~e~npKNY-----Qv-WH--------HRr~ive~l~d~s~rELef~~~~l~~DaKNYHaWshRqW~~r 158 (318)
T KOG0530|consen 93 DLNKELEYLDEIIEDNPKNY-----QV-WH--------HRRVIVELLGDPSFRELEFTKLMLDDDAKNYHAWSHRQWVLR 158 (318)
T ss_pred HHHHHHHHHHHHHHhCccch-----hH-HH--------HHHHHHHHhcCcccchHHHHHHHHhccccchhhhHHHHHHHH
Confidence 78888999999999999998 33 43 3778888888888 7788888899988888766655555555
Q ss_pred HcCCHHHHHHH
Q 026773 218 QLYGVDEARNR 228 (233)
Q Consensus 218 ~Lg~~dEA~~~ 228 (233)
..++++.....
T Consensus 159 ~F~~~~~EL~y 169 (318)
T KOG0530|consen 159 FFKDYEDELAY 169 (318)
T ss_pred HHhhHHHHHHH
Confidence 55666655543
No 271
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=90.54 E-value=0.52 Score=30.49 Aligned_cols=31 Identities=6% Similarity=0.118 Sum_probs=24.9
Q ss_pred hhhhHHHHHHcCCcHHHHHH--HHHHHHcCCCC
Q 026773 175 ILKKLIRVSHFNRFEEGAEQ--FRIDVAQNPND 205 (233)
Q Consensus 175 ~~~rG~al~~lGryeeAi~~--f~kAL~lnP~d 205 (233)
++..|..++..|++++|++. |.-+..++|+|
T Consensus 4 ~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~~n 36 (36)
T PF07720_consen 4 LYGLAYNFYQKGKYDEAIHFFQYAFLCALDKYN 36 (36)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHHHTTT-
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHhcccC
Confidence 44689999999999999999 55888888865
No 272
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=90.21 E-value=1.6 Score=38.93 Aligned_cols=92 Identities=9% Similarity=-0.035 Sum_probs=64.7
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHHHcCCcHHHHHHHHHHHHcCCCCHH
Q 026773 128 IRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSHFNRFEEGAEQFRIDVAQNPNDTE 207 (233)
Q Consensus 128 ~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~lGryeeAi~~f~kAL~lnP~d~e 207 (233)
..++-.....|++++|+...+.++..--+... +.. +=.+++.++...|.+++|++.++..-. ++...
T Consensus 93 L~lAk~~ve~~~~d~A~aqL~~~l~~t~De~l---k~l--------~~lRLArvq~q~~k~D~AL~~L~t~~~--~~w~~ 159 (207)
T COG2976 93 LELAKAEVEANNLDKAEAQLKQALAQTKDENL---KAL--------AALRLARVQLQQKKADAALKTLDTIKE--ESWAA 159 (207)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHHccchhHHH---HHH--------HHHHHHHHHHHhhhHHHHHHHHhcccc--ccHHH
Confidence 34455667899999999999999876543321 011 123689999999999999999875422 22121
Q ss_pred -HHHHHHHHHHHcCCHHHHHHHHHhh
Q 026773 208 -ESIWCFLCEAQLYGVDEARNRFLEA 232 (233)
Q Consensus 208 -~~~~~~l~~a~Lg~~dEA~~~~l~~ 232 (233)
..-.+|-.+..+|+.+||+..+.++
T Consensus 160 ~~~elrGDill~kg~k~~Ar~ay~kA 185 (207)
T COG2976 160 IVAELRGDILLAKGDKQEARAAYEKA 185 (207)
T ss_pred HHHHHhhhHHHHcCchHHHHHHHHHH
Confidence 1234677888999999999998764
No 273
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=89.86 E-value=0.63 Score=46.74 Aligned_cols=106 Identities=11% Similarity=0.017 Sum_probs=78.9
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH-HhhCCCCCCCcc--chhhhhhhhhhhhhhhHHHHHHcCCcHHHHHHH
Q 026773 119 NNSREAVVAIRRGMLLFRQGDVVGSVAEFDKA-IELDPRQKISGK--GAYRFTISIVGIILKKLIRVSHFNRFEEGAEQF 195 (233)
Q Consensus 119 l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkA-IeLdP~~~~~~~--~~y~~~~~~~~a~~~rG~al~~lGryeeAi~~f 195 (233)
..-+.+.+........+..|+|..|++..... |+-.|....-|. ...+| +|+|.+++.+|.|..+...|
T Consensus 235 ~a~~s~~~l~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~--------NNlGcIh~~~~~y~~~~~~F 306 (696)
T KOG2471|consen 235 IAQDSSMALLLKSQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFN--------NNLGCIHYQLGCYQASSVLF 306 (696)
T ss_pred hcCCCcHHHHHHHHHHHHhcchHHHHHHHHhcccccccCccccchhhhheee--------cCcceEeeehhhHHHHHHHH
Confidence 34488899999999999999999999887653 222333110000 01234 48999999999999999999
Q ss_pred HHHHH---------cCC---------CCHHHHHHHHHHHHHcCCHHHHHHHHHhh
Q 026773 196 RIDVA---------QNP---------NDTEESIWCFLCEAQLYGVDEARNRFLEA 232 (233)
Q Consensus 196 ~kAL~---------lnP---------~d~e~~~~~~l~~a~Lg~~dEA~~~~l~~ 232 (233)
.+|++ +.| ..-+..+++|+.+...|++-+|-++|+++
T Consensus 307 ~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~a 361 (696)
T KOG2471|consen 307 LKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKA 361 (696)
T ss_pred HHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHH
Confidence 99996 222 23456688899999999999999999874
No 274
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=89.83 E-value=9.1 Score=34.00 Aligned_cols=119 Identities=11% Similarity=0.015 Sum_probs=79.5
Q ss_pred hHHHhccCcchHHHHHHHHhccc--CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCC--Cccc--------
Q 026773 96 PTFTRRLFIPSVSGIWDALTGGN--NNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKI--SGKG-------- 163 (233)
Q Consensus 96 ~~~~r~~~~~~a~~i~~~~i~~~--l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~--~~~~-------- 163 (233)
...-+.+..+-|......+.... ..+..+.+.+.....+...|+.++|+...+..++-...... ..+.
T Consensus 154 ~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~~~~~~~~~~~ 233 (352)
T PF02259_consen 154 KLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSISNAELKSGLLE 233 (352)
T ss_pred HHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccccHHHHhhcccc
Confidence 33444446666776666665211 12237888899999999999999999999999982211110 0000
Q ss_pred ----------hhhhhhhhhhhhhhhHHHHHHc------CCcHHHHHHHHHHHHcCCCCHHHHHHHHH
Q 026773 164 ----------AYRFTISIVGIILKKLIRVSHF------NRFEEGAEQFRIDVAQNPNDTEESIWCFL 214 (233)
Q Consensus 164 ----------~y~~~~~~~~a~~~rG~al~~l------GryeeAi~~f~kAL~lnP~d~e~~~~~~l 214 (233)
......-...+++.+|.-.... +..+++++.|..+++++|+....+...+.
T Consensus 234 ~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~ 300 (352)
T PF02259_consen 234 SLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWAL 300 (352)
T ss_pred ccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHH
Confidence 0000012367777888888888 99999999999999999998886655543
No 275
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=88.66 E-value=0.3 Score=46.71 Aligned_cols=72 Identities=10% Similarity=0.134 Sum_probs=63.6
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHHHcCCcHHHHHHHHHHHHcC
Q 026773 123 EAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSHFNRFEEGAEQFRIDVAQN 202 (233)
Q Consensus 123 ~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~lGryeeAi~~f~kAL~ln 202 (233)
-...+.+.+.+.+..+++.+|+..-.-+++.++... ..+|. ||.++..+.++++|+++...+...+
T Consensus 274 r~~~~~n~~~~~lk~~~~~~a~~~~~~~~~~~~s~t-----ka~~R---------r~~~~~~~~~~~~a~~~~~~a~~~~ 339 (372)
T KOG0546|consen 274 RFSIRRNLAAVGLKVKGRGGARFRTNEALRDERSKT-----KAHYR---------RGQAYKLLKNYDEALEDLKKAKQKA 339 (372)
T ss_pred ccccccchHHhcccccCCCcceeccccccccChhhC-----cHHHH---------HHhHHHhhhchhhhHHHHHHhhccC
Confidence 334555677888899999999999999999999888 67888 9999999999999999999999999
Q ss_pred CCCHHH
Q 026773 203 PNDTEE 208 (233)
Q Consensus 203 P~d~e~ 208 (233)
|++.+.
T Consensus 340 p~d~~i 345 (372)
T KOG0546|consen 340 PNDKAI 345 (372)
T ss_pred cchHHH
Confidence 998864
No 276
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=88.62 E-value=2.5 Score=43.45 Aligned_cols=68 Identities=12% Similarity=0.070 Sum_probs=43.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHHHcCCcHHHHHHHHHHHHcCCCCH
Q 026773 127 AIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSHFNRFEEGAEQFRIDVAQNPNDT 206 (233)
Q Consensus 127 y~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~lGryeeAi~~f~kAL~lnP~d~ 206 (233)
..+++.++...|-.-.|-....+++.|+-..+ -.++ ..|.++..+.+.+.|++.|+.|++++|+++
T Consensus 645 ~v~la~~~~~~~~~~da~~~l~q~l~~~~sep-----l~~~---------~~g~~~l~l~~i~~a~~~~~~a~~~~~~~~ 710 (886)
T KOG4507|consen 645 LVNLANLLIHYGLHLDATKLLLQALAINSSEP-----LTFL---------SLGNAYLALKNISGALEAFRQALKLTTKCP 710 (886)
T ss_pred HHHHHHHHHHhhhhccHHHHHHHHHhhcccCc-----hHHH---------hcchhHHHHhhhHHHHHHHHHHHhcCCCCh
Confidence 34455555555555555555555555553333 1223 378888888888888888888888888887
Q ss_pred HH
Q 026773 207 EE 208 (233)
Q Consensus 207 e~ 208 (233)
+.
T Consensus 711 ~~ 712 (886)
T KOG4507|consen 711 EC 712 (886)
T ss_pred hh
Confidence 64
No 277
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.14 E-value=6.6 Score=36.73 Aligned_cols=74 Identities=9% Similarity=0.158 Sum_probs=60.1
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHHHcCCcHHHHHHHHHH
Q 026773 119 NNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSHFNRFEEGAEQFRID 198 (233)
Q Consensus 119 l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~lGryeeAi~~f~kA 198 (233)
.-|-.+......+.++..+|+|+||....+.|+.-+|+++ ... .|.=..-.++|...++.+.+-.-
T Consensus 202 k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dp-----etL---------~Nliv~a~~~Gkd~~~~~r~l~Q 267 (299)
T KOG3081|consen 202 KTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDP-----ETL---------ANLIVLALHLGKDAEVTERNLSQ 267 (299)
T ss_pred ccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCH-----HHH---------HHHHHHHHHhCCChHHHHHHHHH
Confidence 4567788888899999999999999999999999999998 332 34777888899999998887655
Q ss_pred HH-cCCCCH
Q 026773 199 VA-QNPNDT 206 (233)
Q Consensus 199 L~-lnP~d~ 206 (233)
++ ..|+++
T Consensus 268 Lk~~~p~h~ 276 (299)
T KOG3081|consen 268 LKLSHPEHP 276 (299)
T ss_pred HHhcCCcch
Confidence 55 456655
No 278
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=87.67 E-value=2.2 Score=32.69 Aligned_cols=54 Identities=9% Similarity=0.030 Sum_probs=43.2
Q ss_pred hhhHHHHHHcCCcHHHHHHHHHHHHcCCCCHHHHHHHH---HHHHHcCCHHHHHHHH
Q 026773 176 LKKLIRVSHFNRFEEGAEQFRIDVAQNPNDTEESIWCF---LCEAQLYGVDEARNRF 229 (233)
Q Consensus 176 ~~rG~al~~lGryeeAi~~f~kAL~lnP~d~e~~~~~~---l~~a~Lg~~dEA~~~~ 229 (233)
+.+|+-+|..++.++|+..++++++..++.++.+.-.| -+++.-|.+++.++.-
T Consensus 10 ie~GlkLY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA 66 (80)
T PF10579_consen 10 IEKGLKLYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFA 66 (80)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46899999999999999999999999998776544443 3455778888877653
No 279
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=87.16 E-value=0.85 Score=43.69 Aligned_cols=59 Identities=10% Similarity=0.140 Sum_probs=53.0
Q ss_pred HHhccCcchHHHHHHHHhcccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCC
Q 026773 98 FTRRLFIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQK 158 (233)
Q Consensus 98 ~~r~~~~~~a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~ 158 (233)
..+.+..++|-.++.-++ +++|++++++...|...-.-++..+|=.+|-||+.++|.+.
T Consensus 126 ~~~~Gk~ekA~~lfeHAl--alaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~ns 184 (472)
T KOG3824|consen 126 SRKDGKLEKAMTLFEHAL--ALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNS 184 (472)
T ss_pred HHhccchHHHHHHHHHHH--hcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCch
Confidence 345556778888888888 89999999999999999999999999999999999999988
No 280
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=87.03 E-value=1.4 Score=42.75 Aligned_cols=64 Identities=9% Similarity=0.103 Sum_probs=45.1
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhh--hhhhhhhhhHHHHHHcCCcHHHHHHHHHHHH
Q 026773 129 RRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTI--SIVGIILKKLIRVSHFNRFEEGAEQFRIDVA 200 (233)
Q Consensus 129 ~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~--~~~~a~~~rG~al~~lGryeeAi~~f~kAL~ 200 (233)
.+-.++..+|||..|++..+- |+++.. ..++.. .-+-.++..|.+|.+++||.+|+..|...+-
T Consensus 127 gLlRvh~LLGDY~~Alk~l~~-idl~~~-------~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~ 192 (404)
T PF10255_consen 127 GLLRVHCLLGDYYQALKVLEN-IDLNKK-------GLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILL 192 (404)
T ss_pred HHHHHHHhccCHHHHHHHhhc-cCcccc-------hhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344567889999999987753 444433 222221 2245666799999999999999999988653
No 281
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=86.50 E-value=3.6 Score=39.55 Aligned_cols=79 Identities=8% Similarity=0.011 Sum_probs=59.1
Q ss_pred cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHHHcCCcHHHHHHHHH
Q 026773 118 NNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSHFNRFEEGAEQFRI 197 (233)
Q Consensus 118 ~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~lGryeeAi~~f~k 197 (233)
..-|+|+..|......-...|-|.+--..|.+++...|.++ ..|- .--..-+...++++.+.+.|.+
T Consensus 101 nkff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nv------dlWI-------~~c~~e~~~~ani~s~Ra~f~~ 167 (435)
T COG5191 101 NKFFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNV------DLWI-------YCCAFELFEIANIESSRAMFLK 167 (435)
T ss_pred hcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCc------eeee-------eeccchhhhhccHHHHHHHHHh
Confidence 45578888888877777777788888888888888888888 2342 0134456677888888888888
Q ss_pred HHHcCCCCHHHH
Q 026773 198 DVAQNPNDTEES 209 (233)
Q Consensus 198 AL~lnP~d~e~~ 209 (233)
++++||+.|..|
T Consensus 168 glR~N~~~p~iw 179 (435)
T COG5191 168 GLRMNSRSPRIW 179 (435)
T ss_pred hhccCCCCchHH
Confidence 888888888644
No 282
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=86.39 E-value=2.8 Score=40.46 Aligned_cols=94 Identities=20% Similarity=0.333 Sum_probs=70.9
Q ss_pred CcchHHHHHHHHhcccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHH
Q 026773 103 FIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRV 182 (233)
Q Consensus 103 ~~~~a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al 182 (233)
-|+....+|+.+. .+.| +|.+-.||+.+....--.+.+++..+...+ +|.-. |-..|+- -||-.+
T Consensus 311 DW~~I~aLYdaL~--~~ap-SPvV~LNRAVAla~~~Gp~agLa~ve~L~~-~~~L~--gy~~~h~---------~RadlL 375 (415)
T COG4941 311 DWPAIDALYDALE--QAAP-SPVVTLNRAVALAMREGPAAGLAMVEALLA-RPRLD--GYHLYHA---------ARADLL 375 (415)
T ss_pred ChHHHHHHHHHHH--HhCC-CCeEeehHHHHHHHhhhHHhHHHHHHHhhc-ccccc--cccccHH---------HHHHHH
Confidence 6788888888876 4444 466678999999888888888888876554 33322 0001333 499999
Q ss_pred HHcCCcHHHHHHHHHHHHcCCCCHHHHHH
Q 026773 183 SHFNRFEEGAEQFRIDVAQNPNDTEESIW 211 (233)
Q Consensus 183 ~~lGryeeAi~~f~kAL~lnP~d~e~~~~ 211 (233)
..+|+-+||-+.|++++.+.++.+|..+.
T Consensus 376 ~rLgr~~eAr~aydrAi~La~~~aer~~l 404 (415)
T COG4941 376 ARLGRVEEARAAYDRAIALARNAAERAFL 404 (415)
T ss_pred HHhCChHHHHHHHHHHHHhcCChHHHHHH
Confidence 99999999999999999999998886443
No 283
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=85.73 E-value=7.1 Score=39.32 Aligned_cols=86 Identities=10% Similarity=0.040 Sum_probs=56.2
Q ss_pred HHHHHHHHhcccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHHHcC
Q 026773 107 VSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSHFN 186 (233)
Q Consensus 107 a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~lG 186 (233)
...+|..++ ..-+.|...|.+.-...-..+.+.+=-..|.+++...|+++ ..|- .-+.=.+..+
T Consensus 90 Iv~lyr~at--~rf~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~------dLWI--------~aA~wefe~n 153 (568)
T KOG2396|consen 90 IVFLYRRAT--NRFNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNP------DLWI--------YAAKWEFEIN 153 (568)
T ss_pred HHHHHHHHH--HhcCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCc------hhHH--------hhhhhHHhhc
Confidence 445666665 55566777777665444455557777778888888888877 2343 1344445555
Q ss_pred C-cHHHHHHHHHHHHcCCCCHHH
Q 026773 187 R-FEEGAEQFRIDVAQNPNDTEE 208 (233)
Q Consensus 187 r-yeeAi~~f~kAL~lnP~d~e~ 208 (233)
. .+.|.+.|.++|+.+|+.+.-
T Consensus 154 ~ni~saRalflrgLR~npdsp~L 176 (568)
T KOG2396|consen 154 LNIESARALFLRGLRFNPDSPKL 176 (568)
T ss_pred cchHHHHHHHHHHhhcCCCChHH
Confidence 5 777888888888888877753
No 284
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=85.17 E-value=11 Score=39.14 Aligned_cols=104 Identities=13% Similarity=0.257 Sum_probs=82.1
Q ss_pred cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-hCCCCCCCccchhhhhhhhhhhhhhhHHHHHHcCCcHHHHHHHH
Q 026773 118 NNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIE-LDPRQKISGKGAYRFTISIVGIILKKLIRVSHFNRFEEGAEQFR 196 (233)
Q Consensus 118 ~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIe-LdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~lGryeeAi~~f~ 196 (233)
.-||++.+-|..| +.+..|+..+-+.-|..|+. .||.-+ -||-.-.|. ..|..|-..|+.+.|...|+
T Consensus 343 RQn~~nV~eW~kR--V~l~e~~~~~~i~tyteAv~~vdP~ka-~Gs~~~Lw~--------~faklYe~~~~l~~aRvife 411 (835)
T KOG2047|consen 343 RQNPHNVEEWHKR--VKLYEGNAAEQINTYTEAVKTVDPKKA-VGSPGTLWV--------EFAKLYENNGDLDDARVIFE 411 (835)
T ss_pred hcCCccHHHHHhh--hhhhcCChHHHHHHHHHHHHccCcccC-CCChhhHHH--------HHHHHHHhcCcHHHHHHHHH
Confidence 7899999999887 46678999999999999885 688877 455566665 68889999999999999999
Q ss_pred HHHHcCCCCHH--HHHHHHHHHH--HcCCHHHHHHHHHhh
Q 026773 197 IDVAQNPNDTE--ESIWCFLCEA--QLYGVDEARNRFLEA 232 (233)
Q Consensus 197 kAL~lnP~d~e--~~~~~~l~~a--~Lg~~dEA~~~~l~~ 232 (233)
+|.+.+-.-.+ +..|+..+.. ...+++.|...+..+
T Consensus 412 ka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A 451 (835)
T KOG2047|consen 412 KATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRA 451 (835)
T ss_pred HhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhh
Confidence 99998765433 3467766655 456889998877654
No 285
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=84.98 E-value=6.1 Score=39.80 Aligned_cols=83 Identities=10% Similarity=0.090 Sum_probs=65.2
Q ss_pred cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHHHcCCcHHHHHHHHH
Q 026773 118 NNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSHFNRFEEGAEQFRI 197 (233)
Q Consensus 118 ~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~lGryeeAi~~f~k 197 (233)
+..|+++--....+..+...|+-+.|+..++.+++ ++.- .. ....+..+|+.+..+.+|..|..+++.
T Consensus 261 ~~~p~ga~wll~~ar~l~~~g~~eaa~~~~~~~v~--~~~k-----Q~-----~~l~~fE~aw~~v~~~~~~~aad~~~~ 328 (546)
T KOG3783|consen 261 KRYPKGALWLLMEARILSIKGNSEAAIDMESLSIP--IRMK-----QV-----KSLMVFERAWLSVGQHQYSRAADSFDL 328 (546)
T ss_pred HhCCCCccHHHHHHHHHHHcccHHHHHHHHHhccc--HHHH-----HH-----HHHHHHHHHHHHHHHHHHHHHhhHHHH
Confidence 57799999999999999999999999999999998 3221 11 145667799999999999999999999
Q ss_pred HHHcCCCCHHHHHHH
Q 026773 198 DVAQNPNDTEESIWC 212 (233)
Q Consensus 198 AL~lnP~d~e~~~~~ 212 (233)
...++--.--.|.+.
T Consensus 329 L~desdWS~a~Y~Yf 343 (546)
T KOG3783|consen 329 LRDESDWSHAFYTYF 343 (546)
T ss_pred HHhhhhhhHHHHHHH
Confidence 887766543334333
No 286
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=84.88 E-value=2.6 Score=41.26 Aligned_cols=99 Identities=10% Similarity=-0.035 Sum_probs=72.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHHHcCCcHHHHHHHHHHHHcCCC
Q 026773 125 VVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSHFNRFEEGAEQFRIDVAQNPN 204 (233)
Q Consensus 125 ~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~lGryeeAi~~f~kAL~lnP~ 204 (233)
.+...+|.++.-++-++++++.|++|+++..++.+ +..- ..++..+|..+..+.++++|+-...+|.++--+
T Consensus 123 q~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D----~~LE----lqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s 194 (518)
T KOG1941|consen 123 QVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDD----AMLE----LQVCVSLGSLFAQLKDYEKALFFPCKAAELVNS 194 (518)
T ss_pred hhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCC----ceee----eehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHh
Confidence 67778999999999999999999999999876652 2211 235667999999999999999999998887543
Q ss_pred C----H------HHHHHHHHHHHHcCCHHHHHHHHHh
Q 026773 205 D----T------EESIWCFLCEAQLYGVDEARNRFLE 231 (233)
Q Consensus 205 d----~------e~~~~~~l~~a~Lg~~dEA~~~~l~ 231 (233)
. . ...+.+..++..+|+.-.|.+.-+|
T Consensus 195 ~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~E 231 (518)
T KOG1941|consen 195 YGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEE 231 (518)
T ss_pred cCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHH
Confidence 1 1 1123334556677777666665544
No 287
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=84.79 E-value=6.5 Score=34.95 Aligned_cols=145 Identities=19% Similarity=0.100 Sum_probs=84.5
Q ss_pred hhhhcchhHHhHhhHhHhhhhhhhhhhhhHhhhhhccCCCCCchhhh-HHhhhhcc---CCcchhhcccccccccccccc
Q 026773 16 KSRTQLPKILHLHQLYYYKFCIFFQFTSMALTQHVLKPTINPPLYSF-HRSLLTSK---APLSVQTHINSLFSTPRGHYL 91 (233)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~---~~~~~~~~~n~~~~~~~~h~~ 91 (233)
++-|..-|+-.+.-+-=|+-||=. .+-.||...|. +-+- -|.++.|. +-++.+|..+.--..+..|
T Consensus 47 ~~pt~~~ky~~l~~le~Y~kCiel----Aa~Iq~i~~~e----~k~~R~~a~~~s~~~l~~L~~~tk~S~dP~llYy~-- 116 (203)
T PF11207_consen 47 KNPTDKNKYQLLEALEKYSKCIEL----AAQIQHIKQKE----RKTDRFRALLHSYQELERLQEETKNSQDPYLLYYH-- 116 (203)
T ss_pred cCCchHHHHHHHHHHHHHHHHHHH----HhcCeeechHh----HHHHHHHHHHHHHHHHHHHHHHHccCCCccHHHHH--
Confidence 445556677888888889999842 22344443332 2111 12233322 2234444444333333333
Q ss_pred ccchhHHHhccCcchHHHHHHHHhcccCCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhh
Q 026773 92 QNRAPTFTRRLFIPSVSGIWDALTGGNNNS--REAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTI 169 (233)
Q Consensus 92 ~~~~~~~~r~~~~~~a~~i~~~~i~~~l~P--~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~ 169 (233)
|+|.+- ..|...+-++ +-.| ++++..+.+|..|. ..|.++|+..+.+|+++.+.+. .+.
T Consensus 117 ------Wsr~~d-~~A~~~fL~~---E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~------~~n-- 177 (203)
T PF11207_consen 117 ------WSRFGD-QEALRRFLQL---EGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDD------NFN-- 177 (203)
T ss_pred ------hhccCc-HHHHHHHHHH---cCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCC------CCC--
Confidence 333221 2233334333 2333 67887777766555 7899999999999999987663 111
Q ss_pred hhhhhhhhhHHHHHHcCCcHHH
Q 026773 170 SIVGIILKKLIRVSHFNRFEEG 191 (233)
Q Consensus 170 ~~~~a~~~rG~al~~lGryeeA 191 (233)
.+++..++.+++.+|+++.|
T Consensus 178 --~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 178 --PEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred --HHHHHHHHHHHHHhcchhhh
Confidence 24666799999999999987
No 288
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=83.93 E-value=2.2 Score=43.91 Aligned_cols=94 Identities=13% Similarity=-0.021 Sum_probs=58.4
Q ss_pred cccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHHHcCCcHHHHHHH
Q 026773 116 GGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSHFNRFEEGAEQF 195 (233)
Q Consensus 116 ~~~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~lGryeeAi~~f 195 (233)
|++-+|.++.-+..-......+|+.-+|+.++..|+-+-|.... +-. .+.+|.++.++|+..+|--.+
T Consensus 205 glq~~~~sw~lH~~as~YWR~~G~~~~A~~Ca~~a~hf~~~h~k---di~---------lLSlaTiL~RaG~sadA~iIL 272 (886)
T KOG4507|consen 205 GLQKNTSSWVLHNMASFYWRIKGEPYQAVECAMRALHFSSRHNK---DIA---------LLSLATVLHRAGFSADAAVIL 272 (886)
T ss_pred hhhcCchhHHHHHHHHHHHHHcCChhhhhHHHHHHhhhCCcccc---cch---------hhhHHHHHHHcccccchhhee
Confidence 34667777766655555556789999999999999999987661 222 234566666666666665555
Q ss_pred HHHHHcCCCCHHHHHHHHHHHHHcCC
Q 026773 196 RIDVAQNPNDTEESIWCFLCEAQLYG 221 (233)
Q Consensus 196 ~kAL~lnP~d~e~~~~~~l~~a~Lg~ 221 (233)
..|+.-.|..++.++-.+.+.++++.
T Consensus 273 hAA~~dA~~~t~n~y~l~~i~aml~~ 298 (886)
T KOG4507|consen 273 HAALDDADFFTSNYYTLGNIYAMLGE 298 (886)
T ss_pred ehhccCCccccccceeHHHHHHHHhh
Confidence 55555555444444444444444443
No 289
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=83.20 E-value=3.6 Score=36.95 Aligned_cols=60 Identities=13% Similarity=0.127 Sum_probs=49.9
Q ss_pred HHcCCHHHHHHHHHHHHhhC-CCCCCCccchhhhhhhhhhhhhhhHHHHHHcC-CcHHHHHHHHHHHHc
Q 026773 135 FRQGDVVGSVAEFDKAIELD-PRQKISGKGAYRFTISIVGIILKKLIRVSHFN-RFEEGAEQFRIDVAQ 201 (233)
Q Consensus 135 ~~lGdyeeAIadfdkAIeLd-P~~~~~~~~~y~~~~~~~~a~~~rG~al~~lG-ryeeAi~~f~kAL~l 201 (233)
..+||++-|...+.|+=.+. ..++ ... ..+.+.+++.|..++..+ ++++|+.++++|.++
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~~~-----~~~--~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~ 65 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSLDP-----DMA--EELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDI 65 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcCCc-----HHH--HHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHH
Confidence 46899999999999998877 3333 111 246789999999999999 999999999999988
No 290
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=82.89 E-value=1.4 Score=42.14 Aligned_cols=57 Identities=16% Similarity=0.234 Sum_probs=48.2
Q ss_pred hccCcchHHHHHHHHhcccCCCCCHHHHHH-HHHHHHHcCCHHHHHHHHHHHHhhCCCCC
Q 026773 100 RRLFIPSVSGIWDALTGGNNNSREAVVAIR-RGMLLFRQGDVVGSVAEFDKAIELDPRQK 158 (233)
Q Consensus 100 r~~~~~~a~~i~~~~i~~~l~P~~a~Ay~~-RG~a~~~lGdyeeAIadfdkAIeLdP~~~ 158 (233)
+++-....-.||.+++ +++|+|++.|.. ...-++..++++.+-+.|.++|++||++|
T Consensus 119 k~k~y~~~~nI~~~~l--~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p 176 (435)
T COG5191 119 KKKMYGEMKNIFAECL--TKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSP 176 (435)
T ss_pred HHHHHHHHHHHHHHHH--hcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCc
Confidence 3334445566777777 899999999998 66678889999999999999999999999
No 291
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=82.59 E-value=5.9 Score=35.22 Aligned_cols=36 Identities=17% Similarity=0.105 Sum_probs=32.7
Q ss_pred CHHHHHHHHHHHHHc------CCHHHHHHHHHHHHhhCCCCC
Q 026773 123 EAVVAIRRGMLLFRQ------GDVVGSVAEFDKAIELDPRQK 158 (233)
Q Consensus 123 ~a~Ay~~RG~a~~~l------GdyeeAIadfdkAIeLdP~~~ 158 (233)
.+.++..+|...... ++.++++..|.+|++++|+..
T Consensus 251 ~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~ 292 (352)
T PF02259_consen 251 KAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWE 292 (352)
T ss_pred HHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHH
Confidence 468888999988888 999999999999999999877
No 292
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=82.54 E-value=1.4 Score=42.58 Aligned_cols=59 Identities=17% Similarity=0.027 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHHHcCCcHHHHHHHHH
Q 026773 125 VVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSHFNRFEEGAEQFRI 197 (233)
Q Consensus 125 ~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~lGryeeAi~~f~k 197 (233)
-++...+..+...|-|++|.+.-++|++|||.+. +..-. ++.++.+.||+.|+++-..+
T Consensus 176 Yv~GmyaFgL~E~g~y~dAEk~A~ralqiN~~D~-----Wa~Ha---------~aHVlem~~r~Keg~eFM~~ 234 (491)
T KOG2610|consen 176 YVHGMYAFGLEECGIYDDAEKQADRALQINRFDC-----WASHA---------KAHVLEMNGRHKEGKEFMYK 234 (491)
T ss_pred HHHHHHHhhHHHhccchhHHHHHHhhccCCCcch-----HHHHH---------HHHHHHhcchhhhHHHHHHh
Confidence 3344444456678999999999999999999887 55444 77788888888888776544
No 293
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=82.43 E-value=16 Score=41.04 Aligned_cols=112 Identities=18% Similarity=0.230 Sum_probs=86.9
Q ss_pred chHHHHHHHHhcccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHHH
Q 026773 105 PSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSH 184 (233)
Q Consensus 105 ~~a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~ 184 (233)
..|.++++.-+ +.--+...+|...|..++++.+-++|-....+|++-=|..- + ++.|-..+..-++
T Consensus 1547 ~~A~ell~~m~--KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~e-------H-----v~~IskfAqLEFk 1612 (1710)
T KOG1070|consen 1547 DEADELLRLML--KKFGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQE-------H-----VEFISKFAQLEFK 1612 (1710)
T ss_pred hhHHHHHHHHH--HHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhh-------h-----HHHHHHHHHHHhh
Confidence 34444555444 33336789999999999999999999999999999999732 1 2345568899999
Q ss_pred cCCcHHHHHHHHHHHHcCCCCHHHHHHHHHH--HHHcCCHHHHHHHHHhh
Q 026773 185 FNRFEEGAEQFRIDVAQNPNDTEESIWCFLC--EAQLYGVDEARNRFLEA 232 (233)
Q Consensus 185 lGryeeAi~~f~kAL~lnP~d~e~~~~~~l~--~a~Lg~~dEA~~~~l~~ 232 (233)
.|+-|.+...|+-.+.-.|.-.+ +|.-.. ..+.|+.+-++..|+.+
T Consensus 1613 ~GDaeRGRtlfEgll~ayPKRtD--lW~VYid~eik~~~~~~vR~lfeRv 1660 (1710)
T KOG1070|consen 1613 YGDAERGRTLFEGLLSAYPKRTD--LWSVYIDMEIKHGDIKYVRDLFERV 1660 (1710)
T ss_pred cCCchhhHHHHHHHHhhCccchh--HHHHHHHHHHccCCHHHHHHHHHHH
Confidence 99999999999999999998776 455434 45778888888888764
No 294
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=82.37 E-value=7.3 Score=29.88 Aligned_cols=67 Identities=16% Similarity=0.255 Sum_probs=50.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHHHcCCcHHHHHHHHHHHHc
Q 026773 124 AVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSHFNRFEEGAEQFRIDVAQ 201 (233)
Q Consensus 124 a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~lGryeeAi~~f~kAL~l 201 (233)
+.....+|.=++.+.+.++||..+.+|++-.++.+ . -|. +.=-+..++...|+|+++++.-.+=+++
T Consensus 6 ak~~ie~GlkLY~~~~~~~Al~~W~~aL~k~~~~~-----~-rf~-----~lG~l~qA~~e~Gkyr~~L~fA~~Q~~~ 72 (80)
T PF10579_consen 6 AKQQIEKGLKLYHQNETQQALQKWRKALEKITDRE-----D-RFR-----VLGYLIQAHMEWGKYREMLAFALQQLEI 72 (80)
T ss_pred HHHHHHHHHHHhccchHHHHHHHHHHHHhhcCChH-----H-HHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45567889999999999999999999999999866 2 222 1112556889999999988876654443
No 295
>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]
Probab=82.33 E-value=2.5 Score=42.35 Aligned_cols=53 Identities=15% Similarity=0.192 Sum_probs=48.6
Q ss_pred cchHHHHHHHHhcccCCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhhCCCCC
Q 026773 104 IPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGD-VVGSVAEFDKAIELDPRQK 158 (233)
Q Consensus 104 ~~~a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~lGd-yeeAIadfdkAIeLdP~~~ 158 (233)
......+|.+++ ..+|++|+.|..-+.-.+..+. .+.|-+.|.++|+.+|+.+
T Consensus 121 ~~~v~ki~~~~l--~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgLR~npdsp 174 (568)
T KOG2396|consen 121 YGEVKKIFAAML--AKHPNNPDLWIYAAKWEFEINLNIESARALFLRGLRFNPDSP 174 (568)
T ss_pred hhHHHHHHHHHH--HhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHhhcCCCCh
Confidence 456788999998 9999999999999999988877 9999999999999999998
No 296
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=82.16 E-value=2.7 Score=41.01 Aligned_cols=88 Identities=17% Similarity=0.125 Sum_probs=59.6
Q ss_pred cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHHHcCCcHHHHHHHHH
Q 026773 118 NNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSHFNRFEEGAEQFRI 197 (233)
Q Consensus 118 ~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~lGryeeAi~~f~k 197 (233)
....+++.-|-.+|.+...+|+++-|.++|.++=..+ .+...+.-.|+-+.=.+..+.
T Consensus 341 a~~~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d~~----------------------~L~lLy~~~g~~~~L~kl~~~ 398 (443)
T PF04053_consen 341 AKELDDPEKWKQLGDEALRQGNIELAEECYQKAKDFS----------------------GLLLLYSSTGDREKLSKLAKI 398 (443)
T ss_dssp CCCCSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT-HH----------------------HHHHHHHHCT-HHHHHHHHHH
T ss_pred HHhcCcHHHHHHHHHHHHHcCCHHHHHHHHHhhcCcc----------------------ccHHHHHHhCCHHHHHHHHHH
Confidence 3456789999999999999999999999998863221 267778888887665555555
Q ss_pred HHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhh
Q 026773 198 DVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLEA 232 (233)
Q Consensus 198 AL~lnP~d~e~~~~~~l~~a~Lg~~dEA~~~~l~~ 232 (233)
|.+..-. .-.+.|...+|+.++-.+.+.++
T Consensus 399 a~~~~~~-----n~af~~~~~lgd~~~cv~lL~~~ 428 (443)
T PF04053_consen 399 AEERGDI-----NIAFQAALLLGDVEECVDLLIET 428 (443)
T ss_dssp HHHTT-H-----HHHHHHHHHHT-HHHHHHHHHHT
T ss_pred HHHccCH-----HHHHHHHHHcCCHHHHHHHHHHc
Confidence 5544321 22344666778888877776653
No 297
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=82.15 E-value=6.1 Score=34.17 Aligned_cols=62 Identities=11% Similarity=-0.128 Sum_probs=44.6
Q ss_pred HHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHHHcCCcHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Q 026773 143 SVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSHFNRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQ 218 (233)
Q Consensus 143 AIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~lGryeeAi~~f~kAL~lnP~d~e~~~~~~l~~a~ 218 (233)
|+..|.+|+.+.|+++ ..+.+ +|++....|+.=+|+-.|-|++-..--.+.+.-+......+
T Consensus 1 A~~~Y~~A~~l~P~~G-----~p~nQ---------LAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRLLPSNG-----NPYNQ---------LAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH-TTBS-----HHHHH---------HHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhCCCCC-----Ccccc---------hhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence 7889999999999998 44444 99999999999999999999997654445444444333333
No 298
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=81.94 E-value=2.9 Score=31.56 Aligned_cols=36 Identities=19% Similarity=0.180 Sum_probs=32.4
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCC
Q 026773 123 EAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQK 158 (233)
Q Consensus 123 ~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~ 158 (233)
...+..++|.++...|++++|+..+++||++-....
T Consensus 40 ~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are~~ 75 (94)
T PF12862_consen 40 LAYALLNLAELHRRFGHYEEALQALEEAIRLARENG 75 (94)
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHC
Confidence 467889999999999999999999999999987665
No 299
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=81.80 E-value=12 Score=34.68 Aligned_cols=101 Identities=14% Similarity=0.124 Sum_probs=62.9
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHHH-cCCcHHHHHHHHHHHHc
Q 026773 123 EAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSH-FNRFEEGAEQFRIDVAQ 201 (233)
Q Consensus 123 ~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~-lGryeeAi~~f~kAL~l 201 (233)
-+..|..-+.+ ++.+|.++|+.+.++||+|-.+-. .... ...-....|-+|-. +.+++.||..|+.|-+-
T Consensus 73 aat~YveA~~c-ykk~~~~eAv~cL~~aieIyt~~G-----rf~~---aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~ 143 (288)
T KOG1586|consen 73 AATTYVEAANC-YKKVDPEEAVNCLEKAIEIYTDMG-----RFTM---AAKHHIEIAEIYESDLQDFEKAIAHYEQAAEY 143 (288)
T ss_pred HHHHHHHHHHH-hhccChHHHHHHHHHHHHHHHhhh-----HHHH---HHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 34555555554 556699999999999999976544 1111 01111235555543 47899999999998775
Q ss_pred CCCC-HHHHHHHH-----HHHHHcCCHHHHHHHHHhh
Q 026773 202 NPND-TEESIWCF-----LCEAQLYGVDEARNRFLEA 232 (233)
Q Consensus 202 nP~d-~e~~~~~~-----l~~a~Lg~~dEA~~~~l~~ 232 (233)
=..+ .....+.- .--++++++.+|++.|+++
T Consensus 144 yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqv 180 (288)
T KOG1586|consen 144 YKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQV 180 (288)
T ss_pred HcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3332 22223321 1133789999999998875
No 300
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=81.73 E-value=2.4 Score=31.94 Aligned_cols=37 Identities=19% Similarity=0.261 Sum_probs=30.1
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-------CCCCC
Q 026773 122 REAVVAIRRGMLLFRQGDVVGSVAEFDKAIEL-------DPRQK 158 (233)
Q Consensus 122 ~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeL-------dP~~~ 158 (233)
+++..+..++.-+-..|++++||..|.+||++ .|+.+
T Consensus 4 ~~A~~~a~~AVe~D~~gr~~eAi~~Y~~aIe~L~q~~~~~pD~~ 47 (75)
T cd02682 4 EMARKYAINAVKAEKEGNAEDAITNYKKAIEVLSQIVKNYPDSP 47 (75)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHhCCChH
Confidence 34667888999999999999999888888765 67666
No 301
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=81.07 E-value=20 Score=40.31 Aligned_cols=112 Identities=14% Similarity=0.159 Sum_probs=73.5
Q ss_pred cchhHHHhccC-cchHHHHHHHHhcccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-hCCCCCCCccchhhhh--
Q 026773 93 NRAPTFTRRLF-IPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIE-LDPRQKISGKGAYRFT-- 168 (233)
Q Consensus 93 ~~~~~~~r~~~-~~~a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIe-LdP~~~~~~~~~y~~~-- 168 (233)
|....-.+.+- .|+.++-+...+ .-+||++-.|.+.=.-+..+++.++|-+.+++|+. ||++-.. .+-..|.
T Consensus 1428 ~~~~~e~~dl~~~pesaeDferlv--rssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REee--EKLNiWiA~ 1503 (1710)
T KOG1070|consen 1428 NRSDEEERDLSRAPESAEDFERLV--RSSPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEE--EKLNIWIAY 1503 (1710)
T ss_pred cccchhhcccccCCcCHHHHHHHH--hcCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhH--HHHHHHHHH
Confidence 33333444443 565555666666 67899999999986666789999999999999995 6776541 0012221
Q ss_pred -h----------------------hhhhhhhhhHHHHHHcCCcHHHHHHHHHHHHcCCCCHHH
Q 026773 169 -I----------------------SIVGIILKKLIRVSHFNRFEEGAEQFRIDVAQNPNDTEE 208 (233)
Q Consensus 169 -~----------------------~~~~a~~~rG~al~~lGryeeAi~~f~kAL~lnP~d~e~ 208 (233)
+ .-.-++..+.-+|...+.+++|.+.++..++.--+-...
T Consensus 1504 lNlEn~yG~eesl~kVFeRAcqycd~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~q~~~v 1566 (1710)
T KOG1070|consen 1504 LNLENAYGTEESLKKVFERACQYCDAYTVHLKLLGIYEKSEKNDEADELLRLMLKKFGQTRKV 1566 (1710)
T ss_pred HhHHHhhCcHHHHHHHHHHHHHhcchHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcchhhH
Confidence 0 013344556677777888888888888888765544443
No 302
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=80.96 E-value=1.8 Score=25.43 Aligned_cols=21 Identities=14% Similarity=0.037 Sum_probs=17.6
Q ss_pred hhhHHHHHHcCCcHHHHHHHH
Q 026773 176 LKKLIRVSHFNRFEEGAEQFR 196 (233)
Q Consensus 176 ~~rG~al~~lGryeeAi~~f~ 196 (233)
.++|.++...|++++|...++
T Consensus 5 ~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 5 LALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHcCCHHHHHHHHh
Confidence 458999999999999988775
No 303
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=80.61 E-value=5.7 Score=33.87 Aligned_cols=27 Identities=30% Similarity=0.327 Sum_probs=18.4
Q ss_pred HHHHHcCCHHHHHHHHHHHHhhCCCCC
Q 026773 132 MLLFRQGDVVGSVAEFDKAIELDPRQK 158 (233)
Q Consensus 132 ~a~~~lGdyeeAIadfdkAIeLdP~~~ 158 (233)
.+-...++.+++....+..=-+.|+.+
T Consensus 18 ~~aL~~~d~~D~e~lLdALrvLrP~~~ 44 (153)
T TIGR02561 18 MYALRSADPYDAQAMLDALRVLRPNLK 44 (153)
T ss_pred HHHHhcCCHHHHHHHHHHHHHhCCCcc
Confidence 333447777777777777777777776
No 304
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=80.06 E-value=14 Score=37.10 Aligned_cols=61 Identities=10% Similarity=0.093 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHHHcCCcHHHHHHHHHH
Q 026773 126 VAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSHFNRFEEGAEQFRID 198 (233)
Q Consensus 126 Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~lGryeeAi~~f~kA 198 (233)
+-..++++.-++|+.+|||+.|..-++.+|... . .++..++-.++..+++|.++-+.+.+-
T Consensus 261 ~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~-----~-------l~IrenLie~LLelq~Yad~q~lL~kY 321 (539)
T PF04184_consen 261 AKRRLAMCARKLGRLREAIKMFRDLLKEFPNLD-----N-------LNIRENLIEALLELQAYADVQALLAKY 321 (539)
T ss_pred hHHHHHHHHHHhCChHHHHHHHHHHHhhCCccc-----h-------hhHHHHHHHHHHhcCCHHHHHHHHHHh
Confidence 345567788899999999999999999998643 1 124556889999999999999998885
No 305
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=79.98 E-value=3.9 Score=38.33 Aligned_cols=93 Identities=10% Similarity=0.100 Sum_probs=68.2
Q ss_pred HHHHHHHHhcccCCCCCHHHHHHHHHHHHHcCCHH-HHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHHHc
Q 026773 107 VSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVV-GSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSHF 185 (233)
Q Consensus 107 a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~lGdye-eAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~l 185 (233)
.....++++ +-+|.|-.+|..|-.+.-..|++. .=++-..++|..|.++. -.|+ -|-.+....
T Consensus 97 El~~l~eI~--e~npKNYQvWHHRr~ive~l~d~s~rELef~~~~l~~DaKNY------HaWs--------hRqW~~r~F 160 (318)
T KOG0530|consen 97 ELEYLDEII--EDNPKNYQVWHHRRVIVELLGDPSFRELEFTKLMLDDDAKNY------HAWS--------HRQWVLRFF 160 (318)
T ss_pred HHHHHHHHH--HhCccchhHHHHHHHHHHHhcCcccchHHHHHHHHhccccch------hhhH--------HHHHHHHHH
Confidence 445666677 778888888888888888888888 77888888888888776 3343 477777777
Q ss_pred CCcHHHHHHHHHHHHcCCCCHHHHHHHHHH
Q 026773 186 NRFEEGAEQFRIDVAQNPNDTEESIWCFLC 215 (233)
Q Consensus 186 GryeeAi~~f~kAL~lnP~d~e~~~~~~l~ 215 (233)
+.|+.=++..+..|+.|-.|-.+|..+++.
T Consensus 161 ~~~~~EL~y~~~Lle~Di~NNSAWN~Ryfv 190 (318)
T KOG0530|consen 161 KDYEDELAYADELLEEDIRNNSAWNQRYFV 190 (318)
T ss_pred hhHHHHHHHHHHHHHHhhhccchhheeeEE
Confidence 778888877777777766555555555443
No 306
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=79.71 E-value=43 Score=30.02 Aligned_cols=122 Identities=11% Similarity=0.076 Sum_probs=71.6
Q ss_pred chHHHHHHHHhcc--cCCCC----CHHHHHHHHHHHHHcC-CHHHHHHHHHHHHhh----CCCCCCCccchhhhhhhhhh
Q 026773 105 PSVSGIWDALTGG--NNNSR----EAVVAIRRGMLLFRQG-DVVGSVAEFDKAIEL----DPRQKISGKGAYRFTISIVG 173 (233)
Q Consensus 105 ~~a~~i~~~~i~~--~l~P~----~a~Ay~~RG~a~~~lG-dyeeAIadfdkAIeL----dP~~~~~~~~~y~~~~~~~~ 173 (233)
.-|+..+.++-.. .++|+ -++.+++.|......+ ++++|+..+++|.++ .+.... ....-. -..-
T Consensus 10 ~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~---~~~~~e-lr~~ 85 (278)
T PF08631_consen 10 DLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKL---SPDGSE-LRLS 85 (278)
T ss_pred HHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhcccc---CCcHHH-HHHH
Confidence 3455555554321 24554 3578899999999999 999999999999999 332220 000000 0123
Q ss_pred hhhhhHHHHHHcCCcHHHHH---HHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 026773 174 IILKKLIRVSHFNRFEEGAE---QFRIDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFL 230 (233)
Q Consensus 174 a~~~rG~al~~lGryeeAi~---~f~kAL~lnP~d~e~~~~~~l~~a~Lg~~dEA~~~~l 230 (233)
++..++.++...+.++...+ ..+.+-.--|+.++.+.+.--...+.++.+++.+.+.
T Consensus 86 iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~ 145 (278)
T PF08631_consen 86 ILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILM 145 (278)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHH
Confidence 44456777777777654433 3344444557777665444333334666777666554
No 307
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=78.87 E-value=15 Score=29.78 Aligned_cols=70 Identities=10% Similarity=0.161 Sum_probs=49.9
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHHHcCC-----------cHHHHHHHHHH
Q 026773 130 RGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSHFNR-----------FEEGAEQFRID 198 (233)
Q Consensus 130 RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~lGr-----------yeeAi~~f~kA 198 (233)
++..+++.||+-+|++..+..|...+++. .. |. .....|.+.+.+.. .-.|+++|.++
T Consensus 2 ~A~~~~~rGnhiKAL~iied~i~~h~~~~-----~~-~~-----lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a 70 (111)
T PF04781_consen 2 KAKDYFARGNHIKALEIIEDLISRHGEDE-----SS-WL-----LHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRA 70 (111)
T ss_pred hHHHHHHccCHHHHHHHHHHHHHHccCCC-----ch-HH-----HHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHH
Confidence 45667899999999999999999999877 21 11 11134666554432 24689999999
Q ss_pred HHcCCCCHHHHH
Q 026773 199 VAQNPNDTEESI 210 (233)
Q Consensus 199 L~lnP~d~e~~~ 210 (233)
..+.|+.+...+
T Consensus 71 ~~Lsp~~A~~L~ 82 (111)
T PF04781_consen 71 VELSPDSAHSLF 82 (111)
T ss_pred hccChhHHHHHH
Confidence 999998754433
No 308
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=78.26 E-value=13 Score=36.47 Aligned_cols=103 Identities=17% Similarity=0.175 Sum_probs=74.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchh-hhhhhhhhhhhhhHHHHHHcCCcHHHHHHHHHHHHcCC
Q 026773 125 VVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAY-RFTISIVGIILKKLIRVSHFNRFEEGAEQFRIDVAQNP 203 (233)
Q Consensus 125 ~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y-~~~~~~~~a~~~rG~al~~lGryeeAi~~f~kAL~lnP 203 (233)
.++..+|-.+.++.|+++|+---.||.+|--.... |++. -+. ..+.+..+.++-++|+.-.|.++.+++.++.-
T Consensus 163 qvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l--~d~~~kyr---~~~lyhmaValR~~G~LgdA~e~C~Ea~klal 237 (518)
T KOG1941|consen 163 QVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGL--KDWSLKYR---AMSLYHMAVALRLLGRLGDAMECCEEAMKLAL 237 (518)
T ss_pred ehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCc--CchhHHHH---HHHHHHHHHHHHHhcccccHHHHHHHHHHHHH
Confidence 68899999999999999999999999999765542 1111 011 34556789999999999999999999987643
Q ss_pred --CCHHHHHHHHHH----HHHcCCHHHHHHHHHhh
Q 026773 204 --NDTEESIWCFLC----EAQLYGVDEARNRFLEA 232 (233)
Q Consensus 204 --~d~e~~~~~~l~----~a~Lg~~dEA~~~~l~~ 232 (233)
.|...+.-.-.| +..+|+.|.|-.+++.+
T Consensus 238 ~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~A 272 (518)
T KOG1941|consen 238 QHGDRALQARCLLCFADIYRSRGDLERAFRRYEQA 272 (518)
T ss_pred HhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHH
Confidence 333333333333 34678888888887754
No 309
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=78.25 E-value=3.8 Score=35.46 Aligned_cols=46 Identities=11% Similarity=0.065 Sum_probs=40.2
Q ss_pred HHHHHHHHhcccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 026773 107 VSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELD 154 (233)
Q Consensus 107 a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLd 154 (233)
|...|..++ .+.|.+...|+++|++....||.-+|+=.|-|++--.
T Consensus 1 A~~~Y~~A~--~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~ 46 (278)
T PF10373_consen 1 AERYYRKAI--RLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVR 46 (278)
T ss_dssp HHHHHHHHH--HH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSS
T ss_pred CHHHHHHHH--HhCCCCCCcccchhhhhccccchHHHHHHHHHHHhcC
Confidence 567888888 8999999999999999999999999999999999664
No 310
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=78.23 E-value=10 Score=35.13 Aligned_cols=66 Identities=14% Similarity=0.094 Sum_probs=55.0
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHHHcCCcHHHHHHHHHHHH
Q 026773 121 SREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSHFNRFEEGAEQFRIDVA 200 (233)
Q Consensus 121 P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~lGryeeAi~~f~kAL~ 200 (233)
.....++..+.-++...|+++.+++++++-|+++|.+- ..+.. .=.+++..|+...|+..|++.-+
T Consensus 150 e~~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E-----~~~~~---------lm~~y~~~g~~~~ai~~y~~l~~ 215 (280)
T COG3629 150 ELFIKALTKLAEALIACGRADAVIEHLERLIELDPYDE-----PAYLR---------LMEAYLVNGRQSAAIRAYRQLKK 215 (280)
T ss_pred HHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccch-----HHHHH---------HHHHHHHcCCchHHHHHHHHHHH
Confidence 34567778888889999999999999999999999887 44333 66788999999999999988655
No 311
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=77.94 E-value=10 Score=38.55 Aligned_cols=100 Identities=11% Similarity=0.110 Sum_probs=65.2
Q ss_pred cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHHHcCCcHHHHHHHHH
Q 026773 118 NNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSHFNRFEEGAEQFRI 197 (233)
Q Consensus 118 ~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~lGryeeAi~~f~k 197 (233)
...|.+|.--..++.+...+|+||+|.++..-+-.+=..-. +.. .. +-..+..+||+++|.+....
T Consensus 317 r~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~----~~~-~~---------~~r~~~~l~r~~~a~s~a~~ 382 (831)
T PRK15180 317 RNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTD----STL-RC---------RLRSLHGLARWREALSTAEM 382 (831)
T ss_pred HhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCc----hHH-HH---------HHHhhhchhhHHHHHHHHHH
Confidence 67788998888999999999999999888754433322111 121 12 45567788899998888877
Q ss_pred HHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHh
Q 026773 198 DVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLE 231 (233)
Q Consensus 198 AL~lnP~d~e~~~~~~l~~a~Lg~~dEA~~~~l~ 231 (233)
.+.-.-+++|....-+..--++|-+|||.-.+..
T Consensus 383 ~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~ 416 (831)
T PRK15180 383 MLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKR 416 (831)
T ss_pred HhccccCChhheeeecccHHHHhHHHHHHHHHHH
Confidence 7766656666432222223356667777655543
No 312
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=77.87 E-value=5.2 Score=33.30 Aligned_cols=50 Identities=16% Similarity=0.045 Sum_probs=39.3
Q ss_pred hhhhhhhHHHHHHcCCcHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCC
Q 026773 172 VGIILKKLIRVSHFNRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQLYG 221 (233)
Q Consensus 172 ~~a~~~rG~al~~lGryeeAi~~f~kAL~lnP~d~e~~~~~~l~~a~Lg~ 221 (233)
.+..+.++...+..|+|.-|.+..+.++..+|+|.+....+.-++.++|.
T Consensus 70 ~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~ 119 (141)
T PF14863_consen 70 ADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGY 119 (141)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHH
Confidence 34556788899999999999999999999999999988777777776653
No 313
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=76.80 E-value=19 Score=37.62 Aligned_cols=116 Identities=16% Similarity=0.147 Sum_probs=84.3
Q ss_pred CcchHHHHHHHHhcccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHH
Q 026773 103 FIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRV 182 (233)
Q Consensus 103 ~~~~a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al 182 (233)
-+.+-...|+.++ .+.=-.|..-.|.|+.+-.-.-+++|.+.|+|-|.|=|=-. +-..|+ .|+-+-+..
T Consensus 492 tfestk~vYdrii--dLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~----v~diW~-----tYLtkfi~r 560 (835)
T KOG2047|consen 492 TFESTKAVYDRII--DLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPN----VYDIWN-----TYLTKFIKR 560 (835)
T ss_pred cHHHHHHHHHHHH--HHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCcc----HHHHHH-----HHHHHHHHH
Confidence 3455677888888 66667788889999999999999999999999999964211 024565 677888888
Q ss_pred HHcCCcHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHh
Q 026773 183 SHFNRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQ----LYGVDEARNRFLE 231 (233)
Q Consensus 183 ~~lGryeeAi~~f~kAL~lnP~d~e~~~~~~l~~a~----Lg~~dEA~~~~l~ 231 (233)
|.--..|.|...|++|++.-| ++..-..++.+++ -|--.-|...+.+
T Consensus 561 ygg~klEraRdLFEqaL~~Cp--p~~aKtiyLlYA~lEEe~GLar~amsiyer 611 (835)
T KOG2047|consen 561 YGGTKLERARDLFEQALDGCP--PEHAKTIYLLYAKLEEEHGLARHAMSIYER 611 (835)
T ss_pred hcCCCHHHHHHHHHHHHhcCC--HHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 888899999999999999888 3333333334333 3544555555544
No 314
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=76.53 E-value=6.5 Score=27.96 Aligned_cols=30 Identities=20% Similarity=0.307 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 026773 124 AVVAIRRGMLLFRQGDVVGSVAEFDKAIEL 153 (233)
Q Consensus 124 a~Ay~~RG~a~~~lGdyeeAIadfdkAIeL 153 (233)
+..+..+|.-.-..|++++|+..|.+|++.
T Consensus 5 A~~~~~~Av~~D~~g~~~~A~~~Y~~ai~~ 34 (69)
T PF04212_consen 5 AIELIKKAVEADEAGNYEEALELYKEAIEY 34 (69)
T ss_dssp HHHHHHHHHHHHHTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 456678889999999999999999888764
No 315
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=76.50 E-value=38 Score=31.71 Aligned_cols=34 Identities=6% Similarity=-0.101 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCC
Q 026773 125 VVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQK 158 (233)
Q Consensus 125 ~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~ 158 (233)
..|..-+.++...++|++|-.+..||++---++.
T Consensus 32 s~yekAAvafRnAk~feKakdcLlkA~~~yEnnr 65 (308)
T KOG1585|consen 32 SLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNR 65 (308)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcc
Confidence 4455555566668889999999999886555554
No 316
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=75.76 E-value=22 Score=37.13 Aligned_cols=95 Identities=8% Similarity=0.018 Sum_probs=72.4
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHHHcCCcHHHHHHHHHHHHcCCCCHHH
Q 026773 129 RRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSHFNRFEEGAEQFRIDVAQNPNDTEE 208 (233)
Q Consensus 129 ~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~lGryeeAi~~f~kAL~lnP~d~e~ 208 (233)
+-+--+|+..+|+.|++.|...+.-=|.+-. . ..+.-+--++...|..+.+.+.|++.+..|=+.||.++-.
T Consensus 359 n~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~----~----~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~ 430 (872)
T KOG4814|consen 359 NTAKKLFKMEKYVVSIRFYKLSLKDIISDNY----S----DRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLC 430 (872)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHhccchhh----h----hHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHH
Confidence 4556678999999999999999998887652 1 1111222256778888899999999999999999998876
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHh
Q 026773 209 SIWCFLCEAQLYGVDEARNRFLE 231 (233)
Q Consensus 209 ~~~~~l~~a~Lg~~dEA~~~~l~ 231 (233)
..........-|.-++|......
T Consensus 431 q~~~~~~~~~E~~Se~AL~~~~~ 453 (872)
T KOG4814|consen 431 QLLMLQSFLAEDKSEEALTCLQK 453 (872)
T ss_pred HHHHHHHHHHhcchHHHHHHHHH
Confidence 66666666677788888877653
No 317
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=74.18 E-value=35 Score=31.97 Aligned_cols=130 Identities=18% Similarity=0.100 Sum_probs=80.2
Q ss_pred cchhHHHhccCcchHHHHHHHHh-cccCC--CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhh
Q 026773 93 NRAPTFTRRLFIPSVSGIWDALT-GGNNN--SR-EAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFT 168 (233)
Q Consensus 93 ~~~~~~~r~~~~~~a~~i~~~~i-~~~l~--P~-~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~ 168 (233)
.++.+|....-..++.+..-+++ +-+.| +- -+.+|-.-|+..-.+..+.|++..|+||+.+--++.. .+ ....
T Consensus 36 kAAvafRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~klsEvvdl~eKAs~lY~E~Gs-pd-tAAm- 112 (308)
T KOG1585|consen 36 KAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVECGS-PD-TAAM- 112 (308)
T ss_pred HHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCC-cc-hHHH-
Confidence 34444444444445555554444 21222 22 2467777888888899999999999999998533321 00 1111
Q ss_pred hhhhhhhhhhHHHHHHcCCcHHHHHHHHHHHHcCCCC---HHHHH---HHHHHHHHcCCHHHHHHHHHh
Q 026773 169 ISIVGIILKKLIRVSHFNRFEEGAEQFRIDVAQNPND---TEESI---WCFLCEAQLYGVDEARNRFLE 231 (233)
Q Consensus 169 ~~~~~a~~~rG~al~~lGryeeAi~~f~kAL~lnP~d---~e~~~---~~~l~~a~Lg~~dEA~~~~l~ 231 (233)
=+.++--.....+.++|+..|.+++.+=.++ -.++= -.+..+.++..++||-..+++
T Consensus 113 ------aleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lK 175 (308)
T KOG1585|consen 113 ------ALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAATAFLK 175 (308)
T ss_pred ------HHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHHHHHHH
Confidence 1346666778889999999999988764332 22221 123456678888888877765
No 318
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=74.05 E-value=26 Score=32.25 Aligned_cols=116 Identities=9% Similarity=-0.024 Sum_probs=75.6
Q ss_pred cCcchHHHHHHHHhcccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHH
Q 026773 102 LFIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIR 181 (233)
Q Consensus 102 ~~~~~a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~a 181 (233)
.+...-..|+.+++ +.+|++...+..+=.+.....+-++-.+-+++++..+|+++ ..|. .|++.-..
T Consensus 45 a~~E~klsilerAL--~~np~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~~~~------~LW~-----~yL~~~q~ 111 (321)
T PF08424_consen 45 ALAERKLSILERAL--KHNPDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKNPGSP------ELWR-----EYLDFRQS 111 (321)
T ss_pred HHHHHHHHHHHHHH--HhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCh------HHHH-----HHHHHHHH
Confidence 34455677888888 77999998776665666677899999999999999999988 5664 22222222
Q ss_pred HHHcCCcHHHHHHHHHHHHcCCC-------------CHHH---HHHHHHH--HHHcCCHHHHHHHHH
Q 026773 182 VSHFNRFEEGAEQFRIDVAQNPN-------------DTEE---SIWCFLC--EAQLYGVDEARNRFL 230 (233)
Q Consensus 182 l~~lGryeeAi~~f~kAL~lnP~-------------d~e~---~~~~~l~--~a~Lg~~dEA~~~~l 230 (233)
....-.+++..+.|.++++.-.. +.+. ++...+| +.+.|-.+-|...+.
T Consensus 112 ~~~~f~v~~~~~~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Q 178 (321)
T PF08424_consen 112 NFASFTVSDVRDVYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQ 178 (321)
T ss_pred HhccCcHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHH
Confidence 22223577888888887765221 1111 1222333 336787788877654
No 319
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=73.88 E-value=8.2 Score=33.95 Aligned_cols=55 Identities=16% Similarity=0.170 Sum_probs=42.5
Q ss_pred ccCcchHHHHHHHHhcccCCC----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 026773 101 RLFIPSVSGIWDALTGGNNNS----REAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDP 155 (233)
Q Consensus 101 ~~~~~~a~~i~~~~i~~~l~P----~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP 155 (233)
..+...|...|.++...+-.| +.....+..|.+..+.|++++|+..|.+.|...-
T Consensus 138 ~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~ 196 (214)
T PF09986_consen 138 KRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSKK 196 (214)
T ss_pred HHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCC
Confidence 335666777787776333333 4467889999999999999999999999998654
No 320
>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=73.83 E-value=37 Score=33.40 Aligned_cols=101 Identities=10% Similarity=0.068 Sum_probs=73.2
Q ss_pred CcchHHHHHHHHhcccCCCCCHHHHHHHHHHHH-HcC-----------CHHHHHHHHHHHHhhCCCCCCCccchhhhhhh
Q 026773 103 FIPSVSGIWDALTGGNNNSREAVVAIRRGMLLF-RQG-----------DVVGSVAEFDKAIELDPRQKISGKGAYRFTIS 170 (233)
Q Consensus 103 ~~~~a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~-~lG-----------dyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~ 170 (233)
+-..+...-.++. +.||...-+|+.|=.+.. ++- -.++-+.--..+++.+|+.. .. |+
T Consensus 44 yd~e~l~lt~~ll--~~npe~~t~wN~Rr~~~~~r~~~~~~~~~ek~~~ld~eL~~~~~~L~~npksY-----~a-W~-- 113 (421)
T KOG0529|consen 44 YDEEHLELTSELL--EKNPEFYTVWNYRRLIIEERLTRAQLEPLEKQALLDEELKYVESALKVNPKSY-----GA-WH-- 113 (421)
T ss_pred cchHHHHHHHHHH--hhCchhhhhhhhHHHHHHHhhhhhcCCHHHHHHhhHHHHHHHHHHHHhCchhH-----HH-HH--
Confidence 4444555555566 788988888876655443 332 35566777889999999887 33 33
Q ss_pred hhhhhhhhHHHHHHcCCc--HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHc
Q 026773 171 IVGIILKKLIRVSHFNRF--EEGAEQFRIDVAQNPNDTEESIWCFLCEAQL 219 (233)
Q Consensus 171 ~~~a~~~rG~al~~lGry--eeAi~~f~kAL~lnP~d~e~~~~~~l~~a~L 219 (233)
.|-.++...+.. ..=++..++++++||.+-.+|.++..+..+.
T Consensus 114 ------hR~w~L~~~p~~~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~ 158 (421)
T KOG0529|consen 114 ------HRKWVLQKNPHSDWNTELQLCEKALKQDPRNFHAWHYRRFVVEQA 158 (421)
T ss_pred ------HHHHHHHhCCCchHHHHHHHHHHHHhcCcccccchHHHHHHHHHH
Confidence 599999877654 7778899999999999998888877665543
No 321
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=73.22 E-value=5.7 Score=29.82 Aligned_cols=31 Identities=23% Similarity=0.221 Sum_probs=27.0
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 026773 123 EAVVAIRRGMLLFRQGDVVGSVAEFDKAIEL 153 (233)
Q Consensus 123 ~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeL 153 (233)
.+..+..++.-.-..|+|++|+..|..||+.
T Consensus 5 ~Ai~~a~~Ave~D~~g~y~eA~~~Y~~aie~ 35 (76)
T cd02681 5 DAVQFARLAVQRDQEGRYSEAVFYYKEAAQL 35 (76)
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 4567788899999999999999999999875
No 322
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=70.87 E-value=8.6 Score=28.70 Aligned_cols=31 Identities=19% Similarity=0.363 Sum_probs=25.1
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 026773 123 EAVVAIRRGMLLFRQGDVVGSVAEFDKAIEL 153 (233)
Q Consensus 123 ~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeL 153 (233)
.+..+..+|+..-..|+|++|+..|.+||+.
T Consensus 5 ~a~~l~~~Ave~D~~g~y~eAl~~Y~~aie~ 35 (77)
T cd02683 5 AAKEVLKRAVELDQEGRFQEALVCYQEGIDL 35 (77)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 3566788889999999999998888887754
No 323
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=68.41 E-value=40 Score=34.29 Aligned_cols=97 Identities=15% Similarity=0.082 Sum_probs=68.6
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHHHcCCcHHHHHHHHHHHHc
Q 026773 122 REAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSHFNRFEEGAEQFRIDVAQ 201 (233)
Q Consensus 122 ~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~lGryeeAi~~f~kAL~l 201 (233)
-.+..+..+|.....-|.|+.|...|-.|.++--.... ..+-+ .|.+++|...|+-+.--+..+. +
T Consensus 365 ~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl----~a~~n-------lnlAi~YL~~~~~ed~y~~ld~---i 430 (629)
T KOG2300|consen 365 HEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESIDL----QAFCN-------LNLAISYLRIGDAEDLYKALDL---I 430 (629)
T ss_pred hHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHHHH----HHHHH-------HhHHHHHHHhccHHHHHHHHHh---c
Confidence 36788999999999999999999999999998765442 33323 5789999998886653333332 5
Q ss_pred CCCCH----------HHHHHHHHHHHHcCCHHHHHHHHHhh
Q 026773 202 NPNDT----------EESIWCFLCEAQLYGVDEARNRFLEA 232 (233)
Q Consensus 202 nP~d~----------e~~~~~~l~~a~Lg~~dEA~~~~l~~ 232 (233)
+|.+. ...+..|+-...++++.||+..+-|+
T Consensus 431 ~p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~ 471 (629)
T KOG2300|consen 431 GPLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRET 471 (629)
T ss_pred CCCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 66531 11233445555889999999887664
No 324
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=68.27 E-value=8.9 Score=21.83 Aligned_cols=26 Identities=15% Similarity=0.411 Sum_probs=21.7
Q ss_pred CCcHHHHHHHHHHHHcCCCCHHHHHHHH
Q 026773 186 NRFEEGAEQFRIDVAQNPNDTEESIWCF 213 (233)
Q Consensus 186 GryeeAi~~f~kAL~lnP~d~e~~~~~~ 213 (233)
|+.+.|.+.|+++++..|.+++ +|..
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~--~W~~ 26 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVE--LWLK 26 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChH--HHHH
Confidence 5788999999999999998776 5553
No 325
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=67.77 E-value=25 Score=32.41 Aligned_cols=70 Identities=14% Similarity=0.242 Sum_probs=52.1
Q ss_pred HHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHHHcCCcHHHHHHHHHHHHcCCCCHH-HHHH
Q 026773 133 LLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSHFNRFEEGAEQFRIDVAQNPNDTE-ESIW 211 (233)
Q Consensus 133 a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~lGryeeAi~~f~kAL~lnP~d~e-~~~~ 211 (233)
.+.+.+..++||.+...-++-+|.+.. .-.+ +=..+.-.|+|+.|...++-+-+++|++.. ..++
T Consensus 10 eLL~~~sL~dai~~a~~qVkakPtda~----~Rhf----------lfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~ly 75 (273)
T COG4455 10 ELLDDNSLQDAIGLARDQVKAKPTDAG----GRHF----------LFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLY 75 (273)
T ss_pred HHHHhccHHHHHHHHHHHHhcCCcccc----chhH----------HHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHH
Confidence 466778899999999999999998872 1111 334677789999999999999999998754 3355
Q ss_pred HHHHH
Q 026773 212 CFLCE 216 (233)
Q Consensus 212 ~~l~~ 216 (233)
+.+..
T Consensus 76 r~lir 80 (273)
T COG4455 76 RHLIR 80 (273)
T ss_pred HHHHH
Confidence 54333
No 326
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=67.74 E-value=11 Score=28.48 Aligned_cols=33 Identities=12% Similarity=0.162 Sum_probs=21.6
Q ss_pred cHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcC
Q 026773 188 FEEGAEQFRIDVAQNPNDTEESIWCFLCEAQLY 220 (233)
Q Consensus 188 yeeAi~~f~kAL~lnP~d~e~~~~~~l~~a~Lg 220 (233)
|.+|++.+.++++..|+++....++..+...+.
T Consensus 29 Y~~aIe~L~q~~~~~pD~~~k~~yr~ki~eY~~ 61 (75)
T cd02682 29 YKKAIEVLSQIVKNYPDSPTRLIYEQMINEYKR 61 (75)
T ss_pred HHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHH
Confidence 455666666677778998877666665554443
No 327
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=67.71 E-value=25 Score=32.67 Aligned_cols=60 Identities=10% Similarity=0.008 Sum_probs=52.4
Q ss_pred hhhhhhhHHHHHHcCCcHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHh
Q 026773 172 VGIILKKLIRVSHFNRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLE 231 (233)
Q Consensus 172 ~~a~~~rG~al~~lGryeeAi~~f~kAL~lnP~d~e~~~~~~l~~a~Lg~~dEA~~~~l~ 231 (233)
+.++-.+.-++...|+++.+++.+++-++++|-+-..+.....++.+.|+...|+..+..
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~ 212 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQ 212 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHH
Confidence 666777888999999999999999999999999888777777778899999999988764
No 328
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=67.64 E-value=85 Score=27.48 Aligned_cols=47 Identities=15% Similarity=0.205 Sum_probs=37.4
Q ss_pred chHHHHHHHHhcccCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhCC
Q 026773 105 PSVSGIWDALTGGNNNSREAVVAIRRGMLLFR----QGDVVGSVAEFDKAIELDP 155 (233)
Q Consensus 105 ~~a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~----lGdyeeAIadfdkAIeLdP 155 (233)
..+...|.+. .+..++.+.+.+|..+.. ..|+.+|...|++|.+..-
T Consensus 94 ~~A~~~~~~~----a~~g~~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~ 144 (292)
T COG0790 94 TKAADWYRCA----AADGLAEALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGN 144 (292)
T ss_pred HHHHHHHHHH----hhcccHHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCC
Confidence 3455555533 467889999999999988 5599999999999999954
No 329
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=67.61 E-value=8.1 Score=38.46 Aligned_cols=59 Identities=14% Similarity=0.136 Sum_probs=49.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHHHcCCcHHHHHHHHHHH
Q 026773 127 AIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSHFNRFEEGAEQFRIDV 199 (233)
Q Consensus 127 y~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~lGryeeAi~~f~kAL 199 (233)
--.+..+|.++++.+-|+..-.+.|-+||.++ ..+.. ++.+.-.+.||.||...+-.+.
T Consensus 231 etklv~CYL~~rkpdlALnh~hrsI~lnP~~f-----rnHLr---------qAavfR~LeRy~eAarSamia~ 289 (569)
T PF15015_consen 231 ETKLVTCYLRMRKPDLALNHSHRSINLNPSYF-----RNHLR---------QAAVFRRLERYSEAARSAMIAD 289 (569)
T ss_pred HHHHHHhhhhcCCCchHHHHHhhhhhcCcchh-----hHHHH---------HHHHHHHHHHHHHHHHHHHHHH
Confidence 34677899999999999999999999999887 33333 7999999999999988876554
No 330
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=67.42 E-value=1e+02 Score=30.79 Aligned_cols=102 Identities=7% Similarity=-0.041 Sum_probs=62.6
Q ss_pred HHHHHHHHhcccCCCCCHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHh-------hCCCCCCCccchhhhhhhhhhh
Q 026773 107 VSGIWDALTGGNNNSREAVVAIRRGMLLFRQ-----GDVVGSVAEFDKAIE-------LDPRQKISGKGAYRFTISIVGI 174 (233)
Q Consensus 107 a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~l-----GdyeeAIadfdkAIe-------LdP~~~~~~~~~y~~~~~~~~a 174 (233)
+...+..+. +-.+..+-..+|.++..- .|.+.|+..|.+|.+ .. ++ ...+
T Consensus 231 a~~~~~~~a----~~g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~--~~-----~a~~------- 292 (552)
T KOG1550|consen 231 AFKYYREAA----KLGHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG--LP-----PAQY------- 292 (552)
T ss_pred HHHHHHHHH----hhcchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc--CC-----cccc-------
Confidence 444444443 467889999999998865 699999999999988 32 11 1111
Q ss_pred hhhhHHHHHHcC-----CcHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcC---CHHHHHHHHH
Q 026773 175 ILKKLIRVSHFN-----RFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQLY---GVDEARNRFL 230 (233)
Q Consensus 175 ~~~rG~al~~lG-----ryeeAi~~f~kAL~lnP~d~e~~~~~~l~~a~Lg---~~dEA~~~~l 230 (233)
.+|.+|+.-. +++.|++.|.++-+++..+. .+..+.|...-. +...|...|.
T Consensus 293 --~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g~~~a--~~~lg~~~~~g~~~~d~~~A~~yy~ 352 (552)
T KOG1550|consen 293 --GLGRLYLQGLGVEKIDYEKALKLYTKAAELGNPDA--QYLLGVLYETGTKERDYRRAFEYYS 352 (552)
T ss_pred --HHHHHHhcCCCCccccHHHHHHHHHHHHhcCCchH--HHHHHHHHHcCCccccHHHHHHHHH
Confidence 2566555532 56667777777777655443 344544544322 3345555554
No 331
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=67.27 E-value=39 Score=33.67 Aligned_cols=91 Identities=13% Similarity=0.075 Sum_probs=57.6
Q ss_pred CHHHHHHHHHHHHHcC-----CHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHHHcC---CcHHHHHH
Q 026773 123 EAVVAIRRGMLLFRQG-----DVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSHFN---RFEEGAEQ 194 (233)
Q Consensus 123 ~a~Ay~~RG~a~~~lG-----dyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~lG---ryeeAi~~ 194 (233)
++.+.+.+|.+|.... |++.|+..|.+|-+++..+. .+ ..|..+..-. ++..|.+.
T Consensus 287 ~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g~~~a-----~~-----------~lg~~~~~g~~~~d~~~A~~y 350 (552)
T KOG1550|consen 287 LPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAELGNPDA-----QY-----------LLGVLYETGTKERDYRRAFEY 350 (552)
T ss_pred CCccccHHHHHHhcCCCCccccHHHHHHHHHHHHhcCCchH-----HH-----------HHHHHHHcCCccccHHHHHHH
Confidence 4446677888887743 77889999999999987655 22 2555555544 45677777
Q ss_pred HHHHHHcCCCCHHHHHHHHHHHHHc----CCHHHHHHHHHh
Q 026773 195 FRIDVAQNPNDTEESIWCFLCEAQL----YGVDEARNRFLE 231 (233)
Q Consensus 195 f~kAL~lnP~d~e~~~~~~l~~a~L----g~~dEA~~~~l~ 231 (233)
|..|... .+.++.++.+.|+..= -+.+.|...+.+
T Consensus 351 y~~Aa~~--G~~~A~~~la~~y~~G~gv~r~~~~A~~~~k~ 389 (552)
T KOG1550|consen 351 YSLAAKA--GHILAIYRLALCYELGLGVERNLELAFAYYKK 389 (552)
T ss_pred HHHHHHc--CChHHHHHHHHHHHhCCCcCCCHHHHHHHHHH
Confidence 7777654 3455556666555421 134555555543
No 332
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=67.18 E-value=22 Score=30.16 Aligned_cols=62 Identities=11% Similarity=-0.021 Sum_probs=41.0
Q ss_pred hhhhhhhhhHHHHHHcCCcHHHHHHHHHHHHcCCCCHHHHHHHHH--H--HHHcCCHHHHHHHHHhh
Q 026773 170 SIVGIILKKLIRVSHFNRFEEGAEQFRIDVAQNPNDTEESIWCFL--C--EAQLYGVDEARNRFLEA 232 (233)
Q Consensus 170 ~~~~a~~~rG~al~~lGryeeAi~~f~kAL~lnP~d~e~~~~~~l--~--~a~Lg~~dEA~~~~l~~ 232 (233)
+|-+++..+|.-++..|+.++|++.|.++.+..-. +...+-..+ + -...++++.....+.++
T Consensus 34 sir~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~-~~~~id~~l~~irv~i~~~d~~~v~~~i~ka 99 (177)
T PF10602_consen 34 SIRMALEDLADHYCKIGDLEEALKAYSRARDYCTS-PGHKIDMCLNVIRVAIFFGDWSHVEKYIEKA 99 (177)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCC-HHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 44567889999999999999999999997775433 222222221 2 22456776666555443
No 333
>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]
Probab=66.88 E-value=5.2 Score=38.49 Aligned_cols=41 Identities=17% Similarity=0.226 Sum_probs=39.2
Q ss_pred cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCC
Q 026773 118 NNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQK 158 (233)
Q Consensus 118 ~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~ 158 (233)
+.++....+|+.||+++....++++|+++...|...+|++.
T Consensus 303 ~~~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~ 343 (372)
T KOG0546|consen 303 RDERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDK 343 (372)
T ss_pred ccChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcchH
Confidence 57889999999999999999999999999999999999987
No 334
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=66.84 E-value=5.6 Score=39.19 Aligned_cols=88 Identities=17% Similarity=0.136 Sum_probs=57.8
Q ss_pred hhHHhhhhccCCcchhhccccccccccccccccchhHHHhccCcchHHHHHHHHhcccCCCCCHHHHHHHHHHHHHcCCH
Q 026773 61 SFHRSLLTSKAPLSVQTHINSLFSTPRGHYLQNRAPTFTRRLFIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDV 140 (233)
Q Consensus 61 ~~~~~~~~~~~~~~~~~~~n~~~~~~~~h~~~~~~~~~~r~~~~~~a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~lGdy 140 (233)
.++|+.-+.---..+++.+|.++...-.+.+-+.+..+-.+...|++. .|..-+.-.+..|.+...++||
T Consensus 194 ~~lrtAtLrhd~e~qavLiN~LLr~yL~n~lydqa~~lvsK~~~pe~~----------snne~ARY~yY~GrIkaiqldY 263 (493)
T KOG2581|consen 194 ALLRTATLRHDEEGQAVLINLLLRNYLHNKLYDQADKLVSKSVYPEAA----------SNNEWARYLYYLGRIKAIQLDY 263 (493)
T ss_pred HHHHHhhhcCcchhHHHHHHHHHHHHhhhHHHHHHHHHhhcccCcccc----------ccHHHHHHHHHHhhHHHhhcch
Confidence 455555555455788888888876544443333333333333222211 1223455667899999999999
Q ss_pred HHHHHHHHHHHhhCCCCC
Q 026773 141 VGSVAEFDKAIELDPRQK 158 (233)
Q Consensus 141 eeAIadfdkAIeLdP~~~ 158 (233)
..|.+.|-+|++..|+..
T Consensus 264 ssA~~~~~qa~rkapq~~ 281 (493)
T KOG2581|consen 264 SSALEYFLQALRKAPQHA 281 (493)
T ss_pred hHHHHHHHHHHHhCcchh
Confidence 999999999999999865
No 335
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=66.56 E-value=16 Score=34.89 Aligned_cols=54 Identities=13% Similarity=0.219 Sum_probs=40.8
Q ss_pred cCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHHHcCCcHHHHHHHHHHHH
Q 026773 137 QGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSHFNRFEEGAEQFRIDVA 200 (233)
Q Consensus 137 lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~lGryeeAi~~f~kAL~ 200 (233)
..+.++|+..|++++++.|+-.. |- + .|+-..-.+.+.+|+|+|.++.|.+.+.
T Consensus 40 e~~p~~Al~sF~kVlelEgEKge----WG-F-----KALKQmiKI~f~l~~~~eMm~~Y~qlLT 93 (440)
T KOG1464|consen 40 EDEPKEALSSFQKVLELEGEKGE----WG-F-----KALKQMIKINFRLGNYKEMMERYKQLLT 93 (440)
T ss_pred ccCHHHHHHHHHHHHhcccccch----hH-H-----HHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence 45899999999999999998773 21 1 1333455678889999999998887654
No 336
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=65.93 E-value=30 Score=37.16 Aligned_cols=74 Identities=16% Similarity=0.233 Sum_probs=57.0
Q ss_pred CHHHHHHHHHHHHHc----C---CHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHHHcCCcHHHHHHH
Q 026773 123 EAVVAIRRGMLLFRQ----G---DVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSHFNRFEEGAEQF 195 (233)
Q Consensus 123 ~a~Ay~~RG~a~~~l----G---dyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~lGryeeAi~~f 195 (233)
--+|-+..|.+...+ | ++++|+..|++- .--|..|. . |+.++++|..+|+|+|=++++
T Consensus 511 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-----~---------~~~~~~~~~~~~~~~~~~~~~ 575 (932)
T PRK13184 511 GYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYL-HGGVGAPL-----E---------YLGKALVYQRLGEYNEEIKSL 575 (932)
T ss_pred chHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHh-cCCCCCch-----H---------HHhHHHHHHHhhhHHHHHHHH
Confidence 457889999988764 3 477777777763 33455553 2 345999999999999999999
Q ss_pred HHHHHcCCCCHHHHHH
Q 026773 196 RIDVAQNPNDTEESIW 211 (233)
Q Consensus 196 ~kAL~lnP~d~e~~~~ 211 (233)
..|++.-|++|+....
T Consensus 576 ~~~~~~~~~~~~~~~~ 591 (932)
T PRK13184 576 LLALKRYSQHPEISRL 591 (932)
T ss_pred HHHHHhcCCCCccHHH
Confidence 9999999999886444
No 337
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=65.75 E-value=89 Score=31.17 Aligned_cols=107 Identities=14% Similarity=0.149 Sum_probs=68.5
Q ss_pred cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhh---------h-------------hhhhhh
Q 026773 118 NNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFT---------I-------------SIVGII 175 (233)
Q Consensus 118 ~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~---------~-------------~~~~a~ 175 (233)
+++|+...+-..-+.++++.|+..++-...+.+-+.+|.=.. +..|. + +-....
T Consensus 257 KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~i----a~lY~~ar~gdta~dRlkRa~~L~slk~nnaes~ 332 (531)
T COG3898 257 KLAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDI----ALLYVRARSGDTALDRLKRAKKLESLKPNNAESS 332 (531)
T ss_pred hcCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHH----HHHHHHhcCCCcHHHHHHHHHHHHhcCccchHHH
Confidence 899999999999999999999999999999999999996331 11111 0 002233
Q ss_pred hhhHHHHHHcCCcHHHHHHHHHHHHcCCCCHHHHHHHH-HHHHHcCCHHHHHHHH
Q 026773 176 LKKLIRVSHFNRFEEGAEQFRIDVAQNPNDTEESIWCF-LCEAQLYGVDEARNRF 229 (233)
Q Consensus 176 ~~rG~al~~lGryeeAi~~f~kAL~lnP~d~e~~~~~~-l~~a~Lg~~dEA~~~~ 229 (233)
+-+..+-+..|+|..|...-+.+.+..|...- +..+. .-++.-|+-.+++..+
T Consensus 333 ~~va~aAlda~e~~~ARa~Aeaa~r~~pres~-~lLlAdIeeAetGDqg~vR~wl 386 (531)
T COG3898 333 LAVAEAALDAGEFSAARAKAEAAAREAPRESA-YLLLADIEEAETGDQGKVRQWL 386 (531)
T ss_pred HHHHHHHHhccchHHHHHHHHHHhhhCchhhH-HHHHHHHHhhccCchHHHHHHH
Confidence 34555556666666666666666666665442 22222 3334456666655544
No 338
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=65.48 E-value=71 Score=32.85 Aligned_cols=72 Identities=11% Similarity=0.016 Sum_probs=58.3
Q ss_pred cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHHHcCCcHHHHHHHHH
Q 026773 118 NNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSHFNRFEEGAEQFRI 197 (233)
Q Consensus 118 ~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~lGryeeAi~~f~k 197 (233)
+.||.|.++|+.+=.-+--+ .+++.-++|++-+.--|..+ .+ |. .--...+..++|+.-.+.|.+
T Consensus 14 e~nP~di~sw~~lire~qt~-~~~~~R~~YEq~~~~FP~s~-----r~-W~--------~yi~~El~skdfe~VEkLF~R 78 (656)
T KOG1914|consen 14 EENPYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNVFPSSP-----RA-WK--------LYIERELASKDFESVEKLFSR 78 (656)
T ss_pred hcCCccHHHHHHHHHHHccC-CHHHHHHHHHHHhccCCCCc-----HH-HH--------HHHHHHHHhhhHHHHHHHHHH
Confidence 79999999999885554444 99999999999999999998 44 43 245566778999999999999
Q ss_pred HHHcCCC
Q 026773 198 DVAQNPN 204 (233)
Q Consensus 198 AL~lnP~ 204 (233)
+|.---+
T Consensus 79 CLvkvLn 85 (656)
T KOG1914|consen 79 CLVKVLN 85 (656)
T ss_pred HHHHHhh
Confidence 9875443
No 339
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=64.78 E-value=11 Score=25.52 Aligned_cols=29 Identities=10% Similarity=0.096 Sum_probs=24.8
Q ss_pred hhhHHHHHHcCCcHHHHHHHHHHHHcCCCC
Q 026773 176 LKKLIRVSHFNRFEEGAEQFRIDVAQNPND 205 (233)
Q Consensus 176 ~~rG~al~~lGryeeAi~~f~kAL~lnP~d 205 (233)
++++.+|..+|+++.|.+..+..++ +++.
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~-~~~~ 31 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIE-EGDE 31 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHH-cCCH
Confidence 4689999999999999999999995 4443
No 340
>PRK11619 lytic murein transglycosylase; Provisional
Probab=64.58 E-value=53 Score=33.69 Aligned_cols=49 Identities=8% Similarity=-0.155 Sum_probs=31.9
Q ss_pred HcCCcHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhh
Q 026773 184 HFNRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLEA 232 (233)
Q Consensus 184 ~lGryeeAi~~f~kAL~lnP~d~e~~~~~~l~~a~Lg~~dEA~~~~l~~ 232 (233)
..++++.....+...-.-.-+.+...+|.+.+...+|+.++|...|.++
T Consensus 324 ~~~dw~~~~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~ 372 (644)
T PRK11619 324 GTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQL 372 (644)
T ss_pred HccCHHHHHHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 6677777666666533322345556678877766678888887777653
No 341
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=64.14 E-value=17 Score=36.44 Aligned_cols=54 Identities=9% Similarity=-0.061 Sum_probs=47.4
Q ss_pred hhHHHHHHcCCcHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHh
Q 026773 177 KKLIRVSHFNRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLE 231 (233)
Q Consensus 177 ~rG~al~~lGryeeAi~~f~kAL~lnP~d~e~~~~~~l~~a~Lg~~dEA~~~~l~ 231 (233)
.-+.-++..|+|.++.-.-.-..+++| .++.+...|+|.....+++||-..+..
T Consensus 467 aDAEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~ 520 (549)
T PF07079_consen 467 ADAEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQK 520 (549)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHh
Confidence 345567889999999999999999999 788889999999999999999998864
No 342
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain.
Probab=63.46 E-value=17 Score=26.20 Aligned_cols=29 Identities=24% Similarity=0.275 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 026773 125 VVAIRRGMLLFRQGDVVGSVAEFDKAIEL 153 (233)
Q Consensus 125 ~Ay~~RG~a~~~lGdyeeAIadfdkAIeL 153 (233)
..+..+|...-..|++++|+..|.+|++.
T Consensus 9 ~~li~~Av~~d~~g~~~eAl~~Y~~a~e~ 37 (77)
T smart00745 9 KELISKALKADEAGDYEEALELYKKAIEY 37 (77)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 34567778888889999888888877764
No 343
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=63.06 E-value=34 Score=37.03 Aligned_cols=112 Identities=13% Similarity=0.115 Sum_probs=71.0
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhh---------hhh--hhhhhhhHHHHHHcCC
Q 026773 119 NNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFT---------ISI--VGIILKKLIRVSHFNR 187 (233)
Q Consensus 119 l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~---------~~~--~~a~~~rG~al~~lGr 187 (233)
-||++-+ ...+..-..+|-.|+|...|.+.-+.|-=|.. =...-.|. ++| -..|++.+.-+-..++
T Consensus 797 q~~~e~e--akvAvLAieLgMlEeA~~lYr~ckR~DLlNKl-yQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Lear~D 873 (1416)
T KOG3617|consen 797 QNGEEDE--AKVAVLAIELGMLEEALILYRQCKRYDLLNKL-YQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYLEARRD 873 (1416)
T ss_pred hCCcchh--hHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHH-HHhcccHHHHHHHHhhccceehhhhHHHHHHHHHhhcc
Confidence 3444333 34555667778888888888777766532220 00000111 011 3567778888888899
Q ss_pred cHHHHHHHHH----------HHHcCC----------CCHHHHHHHHHHHHHcCCHHHHHHHHHhhC
Q 026773 188 FEEGAEQFRI----------DVAQNP----------NDTEESIWCFLCEAQLYGVDEARNRFLEAR 233 (233)
Q Consensus 188 yeeAi~~f~k----------AL~lnP----------~d~e~~~~~~l~~a~Lg~~dEA~~~~l~~~ 233 (233)
.+.|++.|++ .+.-+| .|+.-|-|.+.-+...|..|.|+..+..+|
T Consensus 874 i~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~ 939 (1416)
T KOG3617|consen 874 IEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAK 939 (1416)
T ss_pred HHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhh
Confidence 9999999987 344455 355556777777778899999988887654
No 344
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=62.15 E-value=25 Score=28.46 Aligned_cols=86 Identities=15% Similarity=0.289 Sum_probs=57.5
Q ss_pred hccCcchHHHHHHHHhcccCCCCCH---HHHHHHHHHHHHcCC-----------HHHHHHHHHHHHhhCCCCCCCccchh
Q 026773 100 RRLFIPSVSGIWDALTGGNNNSREA---VVAIRRGMLLFRQGD-----------VVGSVAEFDKAIELDPRQKISGKGAY 165 (233)
Q Consensus 100 r~~~~~~a~~i~~~~i~~~l~P~~a---~Ay~~RG~a~~~lGd-----------yeeAIadfdkAIeLdP~~~~~~~~~y 165 (233)
+++.--+|..+-...+ ..++++. ..+...|.++..++. .-.|+++|.++..+.|..+ ..
T Consensus 8 ~rGnhiKAL~iied~i--~~h~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~~A-----~~ 80 (111)
T PF04781_consen 8 ARGNHIKALEIIEDLI--SRHGEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPDSA-----HS 80 (111)
T ss_pred HccCHHHHHHHHHHHH--HHccCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChhHH-----HH
Confidence 3343445777777777 4444433 778888999877653 3469999999999999765 23
Q ss_pred hhhhhhhhhhhhhHHHHHHcCCcHHHHHHHHHHHHc
Q 026773 166 RFTISIVGIILKKLIRVSHFNRFEEGAEQFRIDVAQ 201 (233)
Q Consensus 166 ~~~~~~~~a~~~rG~al~~lGryeeAi~~f~kAL~l 201 (233)
.+. +|.-+.-..-|++++.-..++|.+
T Consensus 81 L~~---------la~~l~s~~~Ykk~v~kak~~Lsv 107 (111)
T PF04781_consen 81 LFE---------LASQLGSVKYYKKAVKKAKRGLSV 107 (111)
T ss_pred HHH---------HHHHhhhHHHHHHHHHHHHHHhcc
Confidence 332 555544455677777777777765
No 345
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=62.07 E-value=1e+02 Score=29.18 Aligned_cols=92 Identities=16% Similarity=0.047 Sum_probs=61.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CCCCccchhhhhhhhhhhhhhhHHHHHHcCCcHHHHHHHHHHHH---
Q 026773 125 VVAIRRGMLLFRQGDVVGSVAEFDKAIELDPR-QKISGKGAYRFTISIVGIILKKLIRVSHFNRFEEGAEQFRIDVA--- 200 (233)
Q Consensus 125 ~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~-~~~~~~~~y~~~~~~~~a~~~rG~al~~lGryeeAi~~f~kAL~--- 200 (233)
-+.+.....+.+.|-+.-|++...--+.|||. ++. .. .+-.-....+.++|+-=++.++....
T Consensus 104 lal~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~----g~---------ll~ID~~ALrs~~y~~Li~~~~~~~~~~~ 170 (360)
T PF04910_consen 104 LALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPL----GV---------LLFIDYYALRSRQYQWLIDFSESPLAKCY 170 (360)
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcc----hh---------HHHHHHHHHhcCCHHHHHHHHHhHhhhhh
Confidence 34456667888999999999999999999999 663 22 22244444556777666666555433
Q ss_pred -----cCCCCHHHHHHHHHHHHHcCCH---------------HHHHHHHHhh
Q 026773 201 -----QNPNDTEESIWCFLCEAQLYGV---------------DEARNRFLEA 232 (233)
Q Consensus 201 -----lnP~d~e~~~~~~l~~a~Lg~~---------------dEA~~~~l~~ 232 (233)
.=|| ..+-..+|+..+++. ++|...+.++
T Consensus 171 ~~~~~~lPn---~a~S~aLA~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~A 219 (360)
T PF04910_consen 171 RNWLSLLPN---FAFSIALAYFRLEKEESSQSSAQSGRSENSESADEALQKA 219 (360)
T ss_pred hhhhhhCcc---HHHHHHHHHHHhcCccccccccccccccchhHHHHHHHHH
Confidence 2233 234566777788887 7888777654
No 346
>KOG3677 consensus RNA polymerase I-associated factor - PAF67 [Translation, ribosomal structure and biogenesis; Transcription]
Probab=61.06 E-value=12 Score=37.02 Aligned_cols=56 Identities=11% Similarity=0.191 Sum_probs=37.8
Q ss_pred HHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHHHcCCcHHHHHHHHHHH
Q 026773 133 LLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSHFNRFEEGAEQFRIDV 199 (233)
Q Consensus 133 a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~lGryeeAi~~f~kAL 199 (233)
.+..+||+.. --+-|+++|.... |-.+. ..+=+..|.+|.++|||.+|+..|...+
T Consensus 244 ~H~lLgDhQa----t~q~idi~pk~iy-~t~p~------c~VTY~VGFayLmmrryadai~~F~niL 299 (525)
T KOG3677|consen 244 MHILLGDHQA----TSQILDIMPKEIY-GTEPM------CRVTYQVGFAYLMMRRYADAIRVFLNIL 299 (525)
T ss_pred HHHHhhhhHh----hhhhhhcCchhhc-Ccccc------eeEeeehhHHHHHHHHHHHHHHHHHHHH
Confidence 4567899544 6677899997542 00000 0000348999999999999999998765
No 347
>PF08238 Sel1: Sel1 repeat; InterPro: IPR006597 Sel1-like repeats are tetratricopeptide repeat sequences originally identified in a Caenorhabditis elegans receptor molecule which is a key negative regulator of the Notch pathway []. Mammalian homologues have since been identified although these mainly pancreatic proteins have yet to have a function assigned.; PDB: 2XM6_A 3RJV_A 1OUV_A 1KLX_A.
Probab=61.02 E-value=22 Score=21.54 Aligned_cols=31 Identities=19% Similarity=0.239 Sum_probs=22.6
Q ss_pred HHHHHHHH--HHHHHcC-----CHHHHHHHHHHHHhhC
Q 026773 124 AVVAIRRG--MLLFRQG-----DVVGSVAEFDKAIELD 154 (233)
Q Consensus 124 a~Ay~~RG--~a~~~lG-----dyeeAIadfdkAIeLd 154 (233)
|++.+.+| ..+..-. |+++|+..|++|-+.+
T Consensus 1 a~A~~~lg~~~~~~~g~~g~~~d~~~A~~~~~~Aa~~g 38 (39)
T PF08238_consen 1 AEAQYNLGMYYMYYNGKGGVPKDYEKAFKWYEKAAEQG 38 (39)
T ss_dssp HHHHHHHHHHHHHHHTSTSSCHHHHHHHHHHHHHHHTT
T ss_pred ChHHHHHHHHHhhhhccCCccccccchHHHHHHHHHcc
Confidence 56788888 4444432 5799999999998764
No 348
>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
Probab=60.79 E-value=19 Score=26.22 Aligned_cols=30 Identities=13% Similarity=0.266 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 026773 124 AVVAIRRGMLLFRQGDVVGSVAEFDKAIEL 153 (233)
Q Consensus 124 a~Ay~~RG~a~~~lGdyeeAIadfdkAIeL 153 (233)
+.-+..+|+-.-..|+|++|+..|.+|++.
T Consensus 6 A~~l~~~Av~~D~~g~y~eA~~~Y~~aie~ 35 (75)
T cd02678 6 AIELVKKAIEEDNAGNYEEALRLYQHALEY 35 (75)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 445677888888899999988888888764
No 349
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=59.93 E-value=62 Score=30.13 Aligned_cols=79 Identities=6% Similarity=0.025 Sum_probs=60.8
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHHHcCCcHHHHHHHHHHHHcC
Q 026773 123 EAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSHFNRFEEGAEQFRIDVAQN 202 (233)
Q Consensus 123 ~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~lGryeeAi~~f~kAL~ln 202 (233)
--..+...+..-..+|+|.+||+.|++..+-.-++.. .-| +.-|..+.-|+.++-..+.-.+-..+++-.+++
T Consensus 153 ANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~L-----LKy--s~KdyflkAgLChl~~~D~v~a~~ALeky~~~d 225 (288)
T KOG1586|consen 153 ANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNL-----LKY--SAKDYFLKAGLCHLCKADEVNAQRALEKYQELD 225 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchH-----HHh--HHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcC
Confidence 3455666777778899999999999999988877763 222 123344558999998899888999999999999
Q ss_pred CCCHHH
Q 026773 203 PNDTEE 208 (233)
Q Consensus 203 P~d~e~ 208 (233)
|...+.
T Consensus 226 P~F~ds 231 (288)
T KOG1586|consen 226 PAFTDS 231 (288)
T ss_pred Cccccc
Confidence 987654
No 350
>cd02656 MIT MIT: domain contained within Microtubule Interacting and Trafficking molecules. The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar sorting proteins and others. The molecular function of the MIT domain is unclear.
Probab=59.84 E-value=21 Score=25.68 Aligned_cols=30 Identities=13% Similarity=0.220 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 026773 124 AVVAIRRGMLLFRQGDVVGSVAEFDKAIEL 153 (233)
Q Consensus 124 a~Ay~~RG~a~~~lGdyeeAIadfdkAIeL 153 (233)
+..+...|.-.-..|++++|+..|..|++.
T Consensus 6 a~~l~~~Av~~D~~g~~~~Al~~Y~~a~e~ 35 (75)
T cd02656 6 AKELIKQAVKEDEDGNYEEALELYKEALDY 35 (75)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 344567788888889999999888888764
No 351
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=59.58 E-value=17 Score=27.52 Aligned_cols=30 Identities=20% Similarity=0.241 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 026773 124 AVVAIRRGMLLFRQGDVVGSVAEFDKAIEL 153 (233)
Q Consensus 124 a~Ay~~RG~a~~~lGdyeeAIadfdkAIeL 153 (233)
|-.+..+|..+-..|+.++|++.|.++|+.
T Consensus 8 A~~~I~kaL~~dE~g~~e~Al~~Y~~gi~~ 37 (79)
T cd02679 8 AFEEISKALRADEWGDKEQALAHYRKGLRE 37 (79)
T ss_pred HHHHHHHHhhhhhcCCHHHHHHHHHHHHHH
Confidence 345678888888889999999999998875
No 352
>PF12854 PPR_1: PPR repeat
Probab=58.40 E-value=24 Score=21.81 Aligned_cols=27 Identities=19% Similarity=0.075 Sum_probs=22.9
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 026773 123 EAVVAIRRGMLLFRQGDVVGSVAEFDK 149 (233)
Q Consensus 123 ~a~Ay~~RG~a~~~lGdyeeAIadfdk 149 (233)
|...|..+=..+.+.|+.++|++.|++
T Consensus 6 d~~ty~~lI~~~Ck~G~~~~A~~l~~~ 32 (34)
T PF12854_consen 6 DVVTYNTLIDGYCKAGRVDEAFELFDE 32 (34)
T ss_pred cHhHHHHHHHHHHHCCCHHHHHHHHHh
Confidence 456677777889999999999999986
No 353
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=57.78 E-value=31 Score=32.93 Aligned_cols=54 Identities=11% Similarity=-0.016 Sum_probs=43.3
Q ss_pred hhhHHHHHHcCCcHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 026773 176 LKKLIRVSHFNRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQLYGVDEARNRF 229 (233)
Q Consensus 176 ~~rG~al~~lGryeeAi~~f~kAL~lnP~d~e~~~~~~l~~a~Lg~~dEA~~~~ 229 (233)
......+...|.+.+|++...+++.+||-+.+.+-..-..++.+|+.-+|...+
T Consensus 283 gkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khy 336 (361)
T COG3947 283 GKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHY 336 (361)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHH
Confidence 345677889999999999999999999988876655666788899866665544
No 354
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=57.56 E-value=1.1e+02 Score=30.45 Aligned_cols=90 Identities=10% Similarity=0.051 Sum_probs=64.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHH--HHHcCCcHHHHHHHHHHHHc
Q 026773 124 AVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIR--VSHFNRFEEGAEQFRIDVAQ 201 (233)
Q Consensus 124 a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~a--l~~lGryeeAi~~f~kAL~l 201 (233)
+-++..-+.+-..-|||++|-+-|+..+. ||+-- ..-. ||+- -..+|..+.|...-+++-+.
T Consensus 120 pLIhlLeAQaal~eG~~~~Ar~kfeAMl~-dPEtR------llGL---------RgLyleAqr~GareaAr~yAe~Aa~~ 183 (531)
T COG3898 120 PLIHLLEAQAALLEGDYEDARKKFEAMLD-DPETR------LLGL---------RGLYLEAQRLGAREAARHYAERAAEK 183 (531)
T ss_pred HHHHHHHHHHHHhcCchHHHHHHHHHHhc-ChHHH------HHhH---------HHHHHHHHhcccHHHHHHHHHHHHhh
Confidence 44455556666788999999999987664 56433 1111 4443 34679999999999999999
Q ss_pred CCCCHHHHHHHHH--HHHHcCCHHHHHHHHHh
Q 026773 202 NPNDTEESIWCFL--CEAQLYGVDEARNRFLE 231 (233)
Q Consensus 202 nP~d~e~~~~~~l--~~a~Lg~~dEA~~~~l~ 231 (233)
-|.-+. .|... ..+..|++++|+.....
T Consensus 184 Ap~l~W--A~~AtLe~r~~~gdWd~AlkLvd~ 213 (531)
T COG3898 184 APQLPW--AARATLEARCAAGDWDGALKLVDA 213 (531)
T ss_pred ccCCch--HHHHHHHHHHhcCChHHHHHHHHH
Confidence 998764 55543 35678999999887654
No 355
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=57.44 E-value=16 Score=27.45 Aligned_cols=23 Identities=17% Similarity=0.092 Sum_probs=15.6
Q ss_pred HHHHHHcCCcHHHHHHHHHHHHc
Q 026773 179 LIRVSHFNRFEEGAEQFRIDVAQ 201 (233)
Q Consensus 179 G~al~~lGryeeAi~~f~kAL~l 201 (233)
|+..-..|+|++|++.|..+++.
T Consensus 13 A~~eD~~gny~eA~~lY~~ale~ 35 (75)
T cd02680 13 AFDEDEKGNAEEAIELYTEAVEL 35 (75)
T ss_pred HHHhhHhhhHHHHHHHHHHHHHH
Confidence 33334467888888888887764
No 356
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=57.27 E-value=30 Score=35.40 Aligned_cols=92 Identities=18% Similarity=0.258 Sum_probs=57.6
Q ss_pred CCCHHHHHHHHHHHHHcCC--------------HHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHHHcC
Q 026773 121 SREAVVAIRRGMLLFRQGD--------------VVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSHFN 186 (233)
Q Consensus 121 P~~a~Ay~~RG~a~~~lGd--------------yeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~lG 186 (233)
+-.+++|+.-.+.+...+| -+++...|+++|+---+-. -..++..-
T Consensus 276 ~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~--------------------~~Ly~~~a 335 (656)
T KOG1914|consen 276 GYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKEN--------------------KLLYFALA 335 (656)
T ss_pred hcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHH--------------------HHHHHHHH
Confidence 5678888887777777777 7889999999987654322 22333334
Q ss_pred CcHHHH----------HHHHHHHHcCCCCHHHHHHH-HHH-HHHcCCHHHHHHHHHhhC
Q 026773 187 RFEEGA----------EQFRIDVAQNPNDTEESIWC-FLC-EAQLYGVDEARNRFLEAR 233 (233)
Q Consensus 187 ryeeAi----------~~f~kAL~lnP~d~e~~~~~-~l~-~a~Lg~~dEA~~~~l~~~ 233 (233)
+++|+. +.+++.+.+.-.++.. .|+ .+- ..+..+.+.|+..|.++|
T Consensus 336 ~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tL-v~~~~mn~irR~eGlkaaR~iF~kaR 393 (656)
T KOG1914|consen 336 DYEESRYDDNKEKKVHEIYNKLLKIEDIDLTL-VYCQYMNFIRRAEGLKAARKIFKKAR 393 (656)
T ss_pred hhHHHhcccchhhhhHHHHHHHHhhhccCCce-ehhHHHHHHHHhhhHHHHHHHHHHHh
Confidence 444444 4466666654444432 222 222 225677999999999887
No 357
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=56.77 E-value=21 Score=24.06 Aligned_cols=25 Identities=20% Similarity=0.348 Sum_probs=23.1
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHh
Q 026773 128 IRRGMLLFRQGDVVGSVAEFDKAIE 152 (233)
Q Consensus 128 ~~RG~a~~~lGdyeeAIadfdkAIe 152 (233)
+.++.+|..+||+++|.+..+..++
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHH
Confidence 5788999999999999999999995
No 358
>COG4259 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=54.56 E-value=37 Score=27.65 Aligned_cols=41 Identities=22% Similarity=0.250 Sum_probs=36.3
Q ss_pred cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCC
Q 026773 118 NNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQK 158 (233)
Q Consensus 118 ~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~ 158 (233)
+.-|--|..+.++|+.+...|+-|.|++.|+.--++=|+..
T Consensus 66 k~~~vpPG~HAhLGlLys~~G~~e~a~~eFetEKalFPES~ 106 (121)
T COG4259 66 KNGAVPPGYHAHLGLLYSNSGKDEQAVREFETEKALFPESG 106 (121)
T ss_pred cCCCCCCcHHHHHHHHHhhcCChHHHHHHHHHhhhhCccch
Confidence 34456678899999999999999999999999999999877
No 359
>PF12854 PPR_1: PPR repeat
Probab=54.45 E-value=29 Score=21.47 Aligned_cols=24 Identities=25% Similarity=-0.082 Sum_probs=18.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHhh
Q 026773 209 SIWCFLCEAQLYGVDEARNRFLEA 232 (233)
Q Consensus 209 ~~~~~l~~a~Lg~~dEA~~~~l~~ 232 (233)
+.-.-.++++.|+.++|.+.|.+-
T Consensus 10 y~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 10 YNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHhC
Confidence 333446788999999999988763
No 360
>PF02064 MAS20: MAS20 protein import receptor; InterPro: IPR002056 Virtually all mitochondrial precursors are imported via the same mechanism []: precursors first bind to receptors on the mitochondrial surface, then insert into the translocation channel in the outer membrane. Many outer-membrane proteins participate in the early stages of import, four of which (MAS20, MAS22, MAS37 and MAS70) are components of the receptor. MAS20, which forms a subcomplex with MAS22, seems to interact with most or all mitochondrial precursors, suggesting that the protein binds directly to mitochondrial targeting sequences. The MAS37 and MAS70 components also form a subcomplex, the two subcomplexes possibly binding via their trans- membrane (TM) regions - the TM region of MAS70 promotes oligomerisation of attatched protein domains and shares sequence similarity with the TM region of MAS20 []. MAS20 is also known as TOM20.; GO: 0006605 protein targeting, 0006886 intracellular protein transport, 0005742 mitochondrial outer membrane translocase complex; PDB: 3AX3_A 3AWR_B 2V1S_A 3AX5_C 3AX2_C 1OM2_A 2V1T_B.
Probab=54.09 E-value=23 Score=28.93 Aligned_cols=29 Identities=28% Similarity=0.480 Sum_probs=26.1
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 026773 128 IRRGMLLFRQGDVVGSVAEFDKAIELDPR 156 (233)
Q Consensus 128 ~~RG~a~~~lGdyeeAIadfdkAIeLdP~ 156 (233)
..+|-.+...|++++|+.+|-+||..-|+
T Consensus 67 V~lGE~L~~~G~~~~aa~hf~nAl~V~~q 95 (121)
T PF02064_consen 67 VQLGEQLLAQGDYEEAAEHFYNALKVCPQ 95 (121)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHTSSS
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHhCCC
Confidence 57899999999999999999999999985
No 361
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=53.86 E-value=81 Score=31.30 Aligned_cols=97 Identities=11% Similarity=0.067 Sum_probs=67.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHHHcCCcHHHHHHHHHHHHcC--
Q 026773 125 VVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSHFNRFEEGAEQFRIDVAQN-- 202 (233)
Q Consensus 125 ~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~lGryeeAi~~f~kAL~ln-- 202 (233)
.++-.+|.=|...|+.+.|++.|.|+-.---... .++++++|.=.+-..+|+|-.-...-++|..--
T Consensus 151 ra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~k-----------hvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~ 219 (466)
T KOG0686|consen 151 RALEDLGDHYLDCGQLDNALRCYSRARDYCTSAK-----------HVINMCLNLILVSIYMGNWGHVLSYISKAESTPDA 219 (466)
T ss_pred HHHHHHHHHHHHhccHHHHHhhhhhhhhhhcchH-----------HHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchh
Confidence 5667777778889999999999999544433221 356788888888888999887777777765531
Q ss_pred -----CC-CHHHHHHHHHHHHHcCCHHHHHHHHHhh
Q 026773 203 -----PN-DTEESIWCFLCEAQLYGVDEARNRFLEA 232 (233)
Q Consensus 203 -----P~-d~e~~~~~~l~~a~Lg~~dEA~~~~l~~ 232 (233)
+. .+...-..+++...++.+++|...|+.+
T Consensus 220 ~~~~~q~v~~kl~C~agLa~L~lkkyk~aa~~fL~~ 255 (466)
T KOG0686|consen 220 NENLAQEVPAKLKCAAGLANLLLKKYKSAAKYFLLA 255 (466)
T ss_pred hhhHHHhcCcchHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 00 0111223355666788999999999865
No 362
>PF07219 HemY_N: HemY protein N-terminus; InterPro: IPR010817 This entry represents the N terminus (approximately 150 residues) of bacterial HemY porphyrin biosynthesis proteins. These are membrane protein involved in a late step of protoheme IX synthesis [].
Probab=53.67 E-value=47 Score=25.81 Aligned_cols=31 Identities=6% Similarity=0.014 Sum_probs=26.3
Q ss_pred hhhHHHHHHcCCcHHHHHHHHHHHHcCCCCH
Q 026773 176 LKKLIRVSHFNRFEEGAEQFRIDVAQNPNDT 206 (233)
Q Consensus 176 ~~rG~al~~lGryeeAi~~f~kAL~lnP~d~ 206 (233)
+..|++-+..||++.|.+...++-+..++.+
T Consensus 63 l~~Gl~al~~G~~~~A~k~~~~a~~~~~~~~ 93 (108)
T PF07219_consen 63 LSRGLIALAEGDWQRAEKLLAKAAKLSDNPL 93 (108)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhcCCCHH
Confidence 4589999999999999999999987755433
No 363
>smart00671 SEL1 Sel1-like repeats. These represent a subfamily of TPR (tetratricopeptide repeat) sequences.
Probab=52.82 E-value=30 Score=20.39 Aligned_cols=30 Identities=20% Similarity=0.200 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHc----CCHHHHHHHHHHHHhhC
Q 026773 125 VVAIRRGMLLFRQ----GDVVGSVAEFDKAIELD 154 (233)
Q Consensus 125 ~Ay~~RG~a~~~l----GdyeeAIadfdkAIeLd 154 (233)
.+.+.+|..+..- .|.++|+..|++|-+.+
T Consensus 2 ~a~~~lg~~~~~G~g~~~d~~~A~~~~~~Aa~~g 35 (36)
T smart00671 2 EAQYNLGQMYEYGLGVKKDLEKALEYYKKAAELG 35 (36)
T ss_pred HHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHcc
Confidence 5677888887642 39999999999998764
No 364
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=52.07 E-value=51 Score=24.53 Aligned_cols=59 Identities=10% Similarity=0.133 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHHHcCCcHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHc
Q 026773 140 VVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSHFNRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQL 219 (233)
Q Consensus 140 yeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~lGryeeAi~~f~kAL~lnP~d~e~~~~~~l~~a~L 219 (233)
-..|++...+|++.|-.-- ---.+.-|.+|++.|..+++..|+..-.-..+..+...+
T Consensus 3 ~~~a~~l~~~Ave~D~~g~----------------------y~eAl~~Y~~aie~l~~~lk~e~d~~~k~~~r~ki~eY~ 60 (77)
T cd02683 3 ELAAKEVLKRAVELDQEGR----------------------FQEALVCYQEGIDLLMQVLKGTKDEAKKKNLRQKISEYM 60 (77)
T ss_pred hHHHHHHHHHHHHHHHhcc----------------------HHHHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHH
Confidence 3567777777777775221 111122355677777777888887655445554444433
Q ss_pred C
Q 026773 220 Y 220 (233)
Q Consensus 220 g 220 (233)
.
T Consensus 61 ~ 61 (77)
T cd02683 61 D 61 (77)
T ss_pred H
Confidence 3
No 365
>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.
Probab=51.53 E-value=31 Score=25.48 Aligned_cols=30 Identities=13% Similarity=0.285 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 026773 124 AVVAIRRGMLLFRQGDVVGSVAEFDKAIEL 153 (233)
Q Consensus 124 a~Ay~~RG~a~~~lGdyeeAIadfdkAIeL 153 (233)
+.....+|+-.-..|+|++|+..|..||+.
T Consensus 6 Ai~lv~~Av~~D~~g~y~eA~~lY~~ale~ 35 (75)
T cd02684 6 AIALVVQAVKKDQRGDAAAALSLYCSALQY 35 (75)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 445677888888999999999888888765
No 366
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=51.48 E-value=94 Score=33.86 Aligned_cols=101 Identities=14% Similarity=0.054 Sum_probs=61.6
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC-----------C-----CCccchhhhhhhhhhhhhhhHHHHHHc
Q 026773 122 REAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQ-----------K-----ISGKGAYRFTISIVGIILKKLIRVSHF 185 (233)
Q Consensus 122 ~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~-----------~-----~~~~~~y~~~~~~~~a~~~rG~al~~l 185 (233)
.++..|..-|..+--.|+.+.|+.-|++|-..-.-. + .+|+.+.-|. +|.-|-..
T Consensus 910 ~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D~fs~VrI~C~qGk~~kAa~iA~esgd~AAcYh---------laR~YEn~ 980 (1416)
T KOG3617|consen 910 RDESLYSWWGQYLESVGEMDAALSFYSSAKDYFSMVRIKCIQGKTDKAARIAEESGDKAACYH---------LARMYEND 980 (1416)
T ss_pred cchHHHHHHHHHHhcccchHHHHHHHHHhhhhhhheeeEeeccCchHHHHHHHhcccHHHHHH---------HHHHhhhh
Confidence 355667777888888999999999998874321100 0 0344444444 88889999
Q ss_pred CCcHHHHHHHHHHHHc------CC-CCHHHHHHHHHHHHHcCCHHHHHHHHHh
Q 026773 186 NRFEEGAEQFRIDVAQ------NP-NDTEESIWCFLCEAQLYGVDEARNRFLE 231 (233)
Q Consensus 186 GryeeAi~~f~kAL~l------nP-~d~e~~~~~~l~~a~Lg~~dEA~~~~l~ 231 (233)
|++.+|+.-|.+|-.. -. ||-.-.+|.-.......+.-+|-.+|++
T Consensus 981 g~v~~Av~FfTrAqafsnAIRlcKEnd~~d~L~nlal~s~~~d~v~aArYyEe 1033 (1416)
T KOG3617|consen 981 GDVVKAVKFFTRAQAFSNAIRLCKENDMKDRLANLALMSGGSDLVSAARYYEE 1033 (1416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhhcCchhHHHHHHHHHH
Confidence 9999999988875443 22 3443334442222233344455555544
No 367
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=51.43 E-value=89 Score=27.60 Aligned_cols=86 Identities=14% Similarity=0.177 Sum_probs=54.3
Q ss_pred CCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHHHcCCcHHHHHHHHHHHHcCCCCH-----HHHHH-
Q 026773 138 GDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSHFNRFEEGAEQFRIDVAQNPNDT-----EESIW- 211 (233)
Q Consensus 138 GdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~lGryeeAi~~f~kAL~lnP~d~-----e~~~~- 211 (233)
..-...|+.+++|++.=.+.. .... ...+-...|.-++..|+|++|++.|+.+...--.+. +...+
T Consensus 152 ~hs~~iI~lL~~A~~~f~~~~-----~~R~---~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~ 223 (247)
T PF11817_consen 152 DHSKLIIELLEKAYEQFKKYG-----QNRM---ASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWR 223 (247)
T ss_pred chHHHHHHHHHHHHHHHHHhc-----cchH---HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHH
Confidence 344556777777777654333 1000 012334689999999999999999999865422111 11122
Q ss_pred HHHHHHHcCCHHHHHHHHHh
Q 026773 212 CFLCEAQLYGVDEARNRFLE 231 (233)
Q Consensus 212 ~~l~~a~Lg~~dEA~~~~l~ 231 (233)
..-|..++|+.++....-++
T Consensus 224 l~~Ca~~~~~~~~~l~~~le 243 (247)
T PF11817_consen 224 LLECAKRLGDVEDYLTTSLE 243 (247)
T ss_pred HHHHHHHhCCHHHHHHHHHH
Confidence 34667789999988877665
No 368
>PF13041 PPR_2: PPR repeat family
Probab=51.29 E-value=43 Score=21.78 Aligned_cols=32 Identities=9% Similarity=-0.004 Sum_probs=26.3
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 026773 123 EAVVAIRRGMLLFRQGDVVGSVAEFDKAIELD 154 (233)
Q Consensus 123 ~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLd 154 (233)
|..+|..+=..+.+.|++++|++.|++..+..
T Consensus 2 ~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g 33 (50)
T PF13041_consen 2 DVVTYNTLISGYCKAGKFEEALKLFKEMKKRG 33 (50)
T ss_pred chHHHHHHHHHHHHCcCHHHHHHHHHHHHHcC
Confidence 34566666678899999999999999999764
No 369
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=50.49 E-value=19 Score=30.67 Aligned_cols=74 Identities=16% Similarity=0.163 Sum_probs=48.1
Q ss_pred chhhccccccccccccccccchhHHHhccCcchHHHHHHHHhcccCCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 026773 74 SVQTHINSLFSTPRGHYLQNRAPTFTRRLFIPSVSGIWDALTGGNNNS-REAVVAIRRGMLLFRQGDVVGSVAEFDKAIE 152 (233)
Q Consensus 74 ~~~~~~n~~~~~~~~h~~~~~~~~~~r~~~~~~a~~i~~~~i~~~l~P-~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIe 152 (233)
|.++..|......+..+.++- ..-..+...+.. .-.| ..-+-.+.++..++++|+|+.|+...+..++
T Consensus 31 s~~s~f~lAwaLV~S~~~~dv----------~~GI~iLe~l~~-~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~ 99 (149)
T KOG3364|consen 31 SKQSQFNLAWALVRSRDTEDV----------QEGIVILEDLLK-SAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLE 99 (149)
T ss_pred hHHHHHHHHHHHHcccchHHH----------HHhHHHHHHHhh-hcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHh
Confidence 555555555444444432221 223344545541 1334 3445667889999999999999999999999
Q ss_pred hCCCCC
Q 026773 153 LDPRQK 158 (233)
Q Consensus 153 LdP~~~ 158 (233)
.+|++.
T Consensus 100 ~e~~n~ 105 (149)
T KOG3364|consen 100 TEPNNR 105 (149)
T ss_pred hCCCcH
Confidence 999987
No 370
>PF04212 MIT: MIT (microtubule interacting and transport) domain; InterPro: IPR007330 The MIT domain is found in vacuolar sorting proteins, spastin (probable ATPase involved in the assembly or function of nuclear protein complexes), and a sorting nexin, which may play a role in intracellular trafficking.; PDB: 2DL1_A 2JQK_A 1WR0_A 2CPT_A 2JQH_A 2V6Y_A 2JQ9_A 2K3W_A 1YXR_A 3EAB_E ....
Probab=49.91 E-value=24 Score=24.99 Aligned_cols=38 Identities=13% Similarity=0.185 Sum_probs=18.3
Q ss_pred hHHHHHHcCCcHHHHHHHHH-------HHHcCCCCHHHHHHHHHH
Q 026773 178 KLIRVSHFNRFEEGAEQFRI-------DVAQNPNDTEESIWCFLC 215 (233)
Q Consensus 178 rG~al~~lGryeeAi~~f~k-------AL~lnP~d~e~~~~~~l~ 215 (233)
+|.-.-..|++++|++.|.. +++..|+......++..+
T Consensus 11 ~Av~~D~~g~~~~A~~~Y~~ai~~l~~~~~~~~~~~~~~~l~~k~ 55 (69)
T PF04212_consen 11 KAVEADEAGNYEEALELYKEAIEYLMQALKSESNPERRQALRQKM 55 (69)
T ss_dssp HHHHHHHTTSHHHHHHHHHHHHHHHHHHHHHSTTHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHhccCCCHHHHHHHHHHH
Confidence 34444445555555555554 555565444333344333
No 371
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=49.68 E-value=38 Score=28.20 Aligned_cols=36 Identities=19% Similarity=0.228 Sum_probs=30.5
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCC
Q 026773 123 EAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQK 158 (233)
Q Consensus 123 ~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~ 158 (233)
.++....++...+..|||.-|+...+.++..||++.
T Consensus 69 G~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~ 104 (141)
T PF14863_consen 69 GADKVLERAQAALAAGDYQWAAELLDHLVFADPDNE 104 (141)
T ss_dssp CHHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-H
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcH
Confidence 367888999999999999999999999999999987
No 372
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=49.36 E-value=63 Score=33.11 Aligned_cols=79 Identities=11% Similarity=0.056 Sum_probs=54.1
Q ss_pred HcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHHHcCCcHHHHHHHHHHHHcCCCCHHHHHHHHHH
Q 026773 136 RQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSHFNRFEEGAEQFRIDVAQNPNDTEESIWCFLC 215 (233)
Q Consensus 136 ~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~lGryeeAi~~f~kAL~lnP~d~e~~~~~~l~ 215 (233)
..||.-.|-.-.-.+++-.|..| .... -++.+..++|.||.|.++..-+=.+-..-....--+-..
T Consensus 301 ~~gd~~aas~~~~~~lr~~~~~p-----~~i~---------l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~ 366 (831)
T PRK15180 301 ADGDIIAASQQLFAALRNQQQDP-----VLIQ---------LRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRS 366 (831)
T ss_pred hccCHHHHHHHHHHHHHhCCCCc-----hhhH---------HHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHh
Confidence 46899999999999999999988 3433 389999999999999988865433322111111112224
Q ss_pred HHHcCCHHHHHHH
Q 026773 216 EAQLYGVDEARNR 228 (233)
Q Consensus 216 ~a~Lg~~dEA~~~ 228 (233)
+-.+|+.++|...
T Consensus 367 ~~~l~r~~~a~s~ 379 (831)
T PRK15180 367 LHGLARWREALST 379 (831)
T ss_pred hhchhhHHHHHHH
Confidence 5578888888643
No 373
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=49.03 E-value=43 Score=28.11 Aligned_cols=52 Identities=10% Similarity=0.083 Sum_probs=41.6
Q ss_pred CHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHHHcCCcHHHHHHHHHHHHcCCCC
Q 026773 139 DVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSHFNRFEEGAEQFRIDVAQNPND 205 (233)
Q Consensus 139 dyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~lGryeeAi~~f~kAL~lnP~d 205 (233)
..+..++..++.++-.|+-. . |.+.+.++...|+.+||.....++..+=|.+
T Consensus 126 ~l~~~~~~a~~~l~~~P~~~-------~--------~~~~a~~l~~~G~~~eA~~~~~~~~~lyP~~ 177 (193)
T PF11846_consen 126 MLEAYIEWAERLLRRRPDPN-------V--------YQRYALALALLGDPEEARQWLARARRLYPAD 177 (193)
T ss_pred HHHHHHHHHHHHHHhCCCHH-------H--------HHHHHHHHHHcCCHHHHHHHHHHHHHhCCcH
Confidence 34566777888888888533 2 2358999999999999999999999999943
No 374
>cd02680 MIT_calpain7_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=48.89 E-value=30 Score=25.97 Aligned_cols=30 Identities=17% Similarity=0.262 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 026773 124 AVVAIRRGMLLFRQGDVVGSVAEFDKAIEL 153 (233)
Q Consensus 124 a~Ay~~RG~a~~~lGdyeeAIadfdkAIeL 153 (233)
+.-+...|...-..|+|++|+..|..|++.
T Consensus 6 ai~Lv~~A~~eD~~gny~eA~~lY~~ale~ 35 (75)
T cd02680 6 AHFLVTQAFDEDEKGNAEEAIELYTEAVEL 35 (75)
T ss_pred HHHHHHHHHHhhHhhhHHHHHHHHHHHHHH
Confidence 445667777788899999999999999986
No 375
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=48.53 E-value=38 Score=28.41 Aligned_cols=36 Identities=22% Similarity=0.163 Sum_probs=33.3
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 026773 122 REAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQ 157 (233)
Q Consensus 122 ~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~ 157 (233)
-++.++.+++.++..+||.++|-...+++..+-|.+
T Consensus 142 P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP~~ 177 (193)
T PF11846_consen 142 PDPNVYQRYALALALLGDPEEARQWLARARRLYPAD 177 (193)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcH
Confidence 378999999999999999999999999999999943
No 376
>smart00745 MIT Microtubule Interacting and Trafficking molecule domain.
Probab=47.38 E-value=54 Score=23.50 Aligned_cols=20 Identities=5% Similarity=0.202 Sum_probs=12.9
Q ss_pred cHHHHHHHHHHHHcCCCCHH
Q 026773 188 FEEGAEQFRIDVAQNPNDTE 207 (233)
Q Consensus 188 yeeAi~~f~kAL~lnP~d~e 207 (233)
|.+|++.|.++++..|+...
T Consensus 31 Y~~a~e~l~~~~~~~~~~~~ 50 (77)
T smart00745 31 YKKAIEYLLEGIKVESDSKR 50 (77)
T ss_pred HHHHHHHHHHHhccCCCHHH
Confidence 45666667777777776433
No 377
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=47.29 E-value=29 Score=36.38 Aligned_cols=28 Identities=36% Similarity=0.597 Sum_probs=18.1
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 026773 129 RRGMLLFRQGDVVGSVAEFDKAIELDPR 156 (233)
Q Consensus 129 ~RG~a~~~lGdyeeAIadfdkAIeLdP~ 156 (233)
--|..++..+++++|.--|+.++.+-|.
T Consensus 58 ~E~n~~~~K~d~~~~~~~~~~~~~llp~ 85 (748)
T KOG4151|consen 58 EEGNKLFQKRDYEGAMFRYDCAIKLLPK 85 (748)
T ss_pred hhhhHHhhhhhhhccchhhhhhheeccc
Confidence 3456666666666666666666666663
No 378
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=46.26 E-value=1.3e+02 Score=30.67 Aligned_cols=69 Identities=10% Similarity=0.021 Sum_probs=54.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhh---CCCCCCCccchhhhhhhhhhhhhhhHHHHHHcCC-cHHHHHHHHHHHHc
Q 026773 126 VAIRRGMLLFRQGDVVGSVAEFDKAIEL---DPRQKISGKGAYRFTISIVGIILKKLIRVSHFNR-FEEGAEQFRIDVAQ 201 (233)
Q Consensus 126 Ay~~RG~a~~~lGdyeeAIadfdkAIeL---dP~~~~~~~~~y~~~~~~~~a~~~rG~al~~lGr-yeeAi~~f~kAL~l 201 (233)
-+..+|.++-.+|+.+.|...|..+++- .-++. +.. --|++.+|..+..+|. ..+|.+.+.+|-+-
T Consensus 451 k~lL~g~~lR~Lg~~~~a~~~f~i~~~~e~~~~~d~-----w~~-----PfA~YElA~l~~~~~g~~~e~~~~L~kAr~~ 520 (546)
T KOG3783|consen 451 KYLLKGVILRNLGDSEVAPKCFKIQVEKESKRTEDL-----WAV-----PFALYELALLYWDLGGGLKEARALLLKAREY 520 (546)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcccc-----ccc-----cHHHHHHHHHHHhcccChHHHHHHHHHHHhh
Confidence 4678899999999999999999999843 33332 111 1367789999999999 99999999999887
Q ss_pred CCC
Q 026773 202 NPN 204 (233)
Q Consensus 202 nP~ 204 (233)
..+
T Consensus 521 ~~d 523 (546)
T KOG3783|consen 521 ASD 523 (546)
T ss_pred ccc
Confidence 643
No 379
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=46.05 E-value=27 Score=33.86 Aligned_cols=36 Identities=31% Similarity=0.334 Sum_probs=32.5
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCC
Q 026773 123 EAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQK 158 (233)
Q Consensus 123 ~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~ 158 (233)
.--.|..||..+.++|+.+||-+.|++||++.++..
T Consensus 364 y~~~h~~RadlL~rLgr~~eAr~aydrAi~La~~~a 399 (415)
T COG4941 364 YHLYHAARADLLARLGRVEEARAAYDRAIALARNAA 399 (415)
T ss_pred ccccHHHHHHHHHHhCChHHHHHHHHHHHHhcCChH
Confidence 345678999999999999999999999999999876
No 380
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=45.24 E-value=2.3e+02 Score=25.44 Aligned_cols=53 Identities=21% Similarity=0.260 Sum_probs=34.4
Q ss_pred CcchHHHHHHHHhcccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 026773 103 FIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDP 155 (233)
Q Consensus 103 ~~~~a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP 155 (233)
-..++..-++++....--.--.-+..+.|.++...||-.+|+.+|+.+-.-.|
T Consensus 73 k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~ 125 (221)
T COG4649 73 KTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTS 125 (221)
T ss_pred CchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCC
Confidence 34556666665541111112234567788899999999999999998765444
No 381
>cd02677 MIT_SNX15 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in sorting nexin 15 and related proteins. The molecular function of the MIT domain is unclear.
Probab=45.19 E-value=40 Score=25.04 Aligned_cols=30 Identities=20% Similarity=0.261 Sum_probs=22.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 026773 124 AVVAIRRGMLLFRQGDVVGSVAEFDKAIEL 153 (233)
Q Consensus 124 a~Ay~~RG~a~~~lGdyeeAIadfdkAIeL 153 (233)
+.....+|.-.-..|+|++|+..|..+|+.
T Consensus 6 A~~l~~~Ave~d~~~~y~eA~~~Y~~~i~~ 35 (75)
T cd02677 6 AAELIRLALEKEEEGDYEAAFEFYRAGVDL 35 (75)
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 344566777777789999999888888765
No 382
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=44.67 E-value=35 Score=35.73 Aligned_cols=56 Identities=14% Similarity=0.238 Sum_probs=44.2
Q ss_pred hhHHHHHHcCCcHHHHHHHHHHHHcCCCCHHH----HHHHH--HHHHHcCCHHHHHHHHHhh
Q 026773 177 KKLIRVSHFNRFEEGAEQFRIDVAQNPNDTEE----SIWCF--LCEAQLYGVDEARNRFLEA 232 (233)
Q Consensus 177 ~rG~al~~lGryeeAi~~f~kAL~lnP~d~e~----~~~~~--l~~a~Lg~~dEA~~~~l~~ 232 (233)
|-+.-++++.+|+.+++.|...++--|.|-+. -..+. .|+..+.+.|.|.+.+.|+
T Consensus 359 n~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EA 420 (872)
T KOG4814|consen 359 NTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEA 420 (872)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 38899999999999999999999988865443 23344 4555677899999988875
No 383
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=44.07 E-value=99 Score=33.08 Aligned_cols=98 Identities=16% Similarity=0.054 Sum_probs=61.4
Q ss_pred HHHHHHHHcCCHHHHHHHH------HHHHhhCCCCCCCccchhhhh-----h--------hhhhhhhhhHHHHHHcCCcH
Q 026773 129 RRGMLLFRQGDVVGSVAEF------DKAIELDPRQKISGKGAYRFT-----I--------SIVGIILKKLIRVSHFNRFE 189 (233)
Q Consensus 129 ~RG~a~~~lGdyeeAIadf------dkAIeLdP~~~~~~~~~y~~~-----~--------~~~~a~~~rG~al~~lGrye 189 (233)
.|+-+-..-|+||||.+.| |-||++--+-.. ++-. + ..-+|+.+.|...+.+..++
T Consensus 739 q~aei~~~~g~feeaek~yld~drrDLAielr~klgD-----wfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We 813 (1189)
T KOG2041|consen 739 QRAEISAFYGEFEEAEKLYLDADRRDLAIELRKKLGD-----WFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWE 813 (1189)
T ss_pred HhHhHhhhhcchhHhhhhhhccchhhhhHHHHHhhhh-----HHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHH
Confidence 4555666679999999888 566666544331 1100 0 22456668899999999999
Q ss_pred HHHHHHHHHH----------------------HcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHh
Q 026773 190 EGAEQFRIDV----------------------AQNPNDTEESIWCFLCEAQLYGVDEARNRFLE 231 (233)
Q Consensus 190 eAi~~f~kAL----------------------~lnP~d~e~~~~~~l~~a~Lg~~dEA~~~~l~ 231 (233)
+|.+.|.+.- +-=|++.+..--.+-.+...|.-++|.+.+++
T Consensus 814 ~A~~yY~~~~~~e~~~ecly~le~f~~LE~la~~Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr 877 (1189)
T KOG2041|consen 814 EAAKYYSYCGDTENQIECLYRLELFGELEVLARTLPEDSELLPVMADMFTSVGMCDQAVEAYLR 877 (1189)
T ss_pred HHHHHHHhccchHhHHHHHHHHHhhhhHHHHHHhcCcccchHHHHHHHHHhhchHHHHHHHHHh
Confidence 9998887631 11244444333344455567777777777764
No 384
>cd02678 MIT_VPS4 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in intracellular protein transport proteins of the AAA-ATPase family. The molecular function of the MIT domain is unclear.
Probab=42.53 E-value=49 Score=24.09 Aligned_cols=33 Identities=15% Similarity=0.171 Sum_probs=18.9
Q ss_pred cHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcC
Q 026773 188 FEEGAEQFRIDVAQNPNDTEESIWCFLCEAQLY 220 (233)
Q Consensus 188 yeeAi~~f~kAL~lnP~d~e~~~~~~l~~a~Lg 220 (233)
|.+|++.|..+++..|+......++..+...+.
T Consensus 29 Y~~aie~l~~~~k~e~~~~~k~~~~~k~~eyl~ 61 (75)
T cd02678 29 YQHALEYFMHALKYEKNPKSKESIRAKCTEYLD 61 (75)
T ss_pred HHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHH
Confidence 456666677777777865444444444444433
No 385
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=42.07 E-value=38 Score=19.07 Aligned_cols=25 Identities=20% Similarity=0.231 Sum_probs=18.0
Q ss_pred hhHHHHHHcCCcHHHHHHHHHHHHc
Q 026773 177 KKLIRVSHFNRFEEGAEQFRIDVAQ 201 (233)
Q Consensus 177 ~rG~al~~lGryeeAi~~f~kAL~l 201 (233)
..=.++...|++++|.+.|++..+.
T Consensus 5 ~li~~~~~~~~~~~a~~~~~~M~~~ 29 (31)
T PF01535_consen 5 SLISGYCKMGQFEEALEVFDEMRER 29 (31)
T ss_pred HHHHHHHccchHHHHHHHHHHHhHC
Confidence 3455677788888888888776553
No 386
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=41.99 E-value=21 Score=34.81 Aligned_cols=33 Identities=6% Similarity=0.063 Sum_probs=29.2
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 026773 121 SREAVVAIRRGMLLFRQGDVVGSVAEFDKAIEL 153 (233)
Q Consensus 121 P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeL 153 (233)
+-+...++..|.+++.+++|.+||+.|...+--
T Consensus 161 ~~~is~~YyvGFaylMlrRY~DAir~f~~iL~y 193 (404)
T PF10255_consen 161 ACHISTYYYVGFAYLMLRRYADAIRTFSQILLY 193 (404)
T ss_pred chheehHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456788999999999999999999999998753
No 387
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=41.80 E-value=2.6e+02 Score=28.40 Aligned_cols=94 Identities=12% Similarity=0.041 Sum_probs=59.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHHHcCCcHHHHHHHHHHHHcCCCCH
Q 026773 127 AIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSHFNRFEEGAEQFRIDVAQNPNDT 206 (233)
Q Consensus 127 y~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~lGryeeAi~~f~kAL~lnP~d~ 206 (233)
....|.++-.+|++.+|.+.|.|...-.-+.+ ..+-. ..+-+|=+--+.+++.+.-.......-+..|..+
T Consensus 9 lc~Qgf~Lqkq~~~~esEkifskI~~e~~~~~-----f~lke----Evl~grilnAffl~nld~Me~~l~~l~~~~~~s~ 79 (549)
T PF07079_consen 9 LCFQGFILQKQKKFQESEKIFSKIYDEKESSP-----FLLKE----EVLGGRILNAFFLNNLDLMEKQLMELRQQFGKSA 79 (549)
T ss_pred HHHhhHHHHHHhhhhHHHHHHHHHHHHhhcch-----HHHHH----HHHhhHHHHHHHHhhHHHHHHHHHHHHHhcCCch
Confidence 45678888888888888888888776555443 11111 2333455555666777766666665556667655
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHH
Q 026773 207 EESIWCFLCEAQLYGVDEARNRF 229 (233)
Q Consensus 207 e~~~~~~l~~a~Lg~~dEA~~~~ 229 (233)
.-.+..++...+.+.+++|.+.+
T Consensus 80 ~l~LF~~L~~Y~~k~~~kal~~l 102 (549)
T PF07079_consen 80 YLPLFKALVAYKQKEYRKALQAL 102 (549)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHH
Confidence 44455555566777777777665
No 388
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=40.92 E-value=2.5e+02 Score=24.55 Aligned_cols=93 Identities=9% Similarity=-0.060 Sum_probs=58.8
Q ss_pred chHHHHHHHHhcccCCCCCHHH---HHHHHHHHHHcC-------CHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhh
Q 026773 105 PSVSGIWDALTGGNNNSREAVV---AIRRGMLLFRQG-------DVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGI 174 (233)
Q Consensus 105 ~~a~~i~~~~i~~~l~P~~a~A---y~~RG~a~~~lG-------dyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a 174 (233)
.++...+..+. + -.++.+ -..+|..+..-+ +...|+..|.+|-+..- + ...+.
T Consensus 130 ~~A~~~~~~Aa--~--~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~~--~-----~a~~~------ 192 (292)
T COG0790 130 VKALKYYEKAA--K--LGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELGN--P-----DAQLL------ 192 (292)
T ss_pred HHHHHHHHHHH--H--cCChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhcC--H-----HHHHH------
Confidence 34555555554 2 234444 778887776642 33479999999888873 2 23333
Q ss_pred hhhhHHHHHH----cCCcHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcC
Q 026773 175 ILKKLIRVSH----FNRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQLY 220 (233)
Q Consensus 175 ~~~rG~al~~----lGryeeAi~~f~kAL~lnP~d~e~~~~~~l~~a~Lg 220 (233)
.|..|.. -.++++|+.+|.+|.+... .+..++.+ +...-|
T Consensus 193 ---lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~--~~a~~~~~-~~~~~g 236 (292)
T COG0790 193 ---LGRMYEKGLGVPRDLKKAFRWYKKAAEQGD--GAACYNLG-LMYLNG 236 (292)
T ss_pred ---HHHHHHcCCCCCcCHHHHHHHHHHHHHCCC--HHHHHHHH-HHHhcC
Confidence 5644433 4488999999999999887 55556665 544444
No 389
>PF13934 ELYS: Nuclear pore complex assembly
Probab=40.86 E-value=65 Score=28.47 Aligned_cols=88 Identities=11% Similarity=0.038 Sum_probs=52.6
Q ss_pred HHHHHHHHHHHHcCCHH-----HHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHHHcCCcHHHHHHHHHHH
Q 026773 125 VVAIRRGMLLFRQGDVV-----GSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSHFNRFEEGAEQFRIDV 199 (233)
Q Consensus 125 ~Ay~~RG~a~~~lGdye-----eAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~lGryeeAi~~f~kAL 199 (233)
.........++.+-|++ ++++.|-++..+.|+.. .. -+|.-+..-+++++|++.+...
T Consensus 42 ~~~~K~~l~~YlLlD~~~~~~~~~~~~Fa~~f~ip~~~~------~~----------~~g~W~LD~~~~~~A~~~L~~p- 104 (226)
T PF13934_consen 42 SLLKKHSLFYYLLLDLDDTRPSELAESFARAFGIPPKYI------KF----------IQGFWLLDHGDFEEALELLSHP- 104 (226)
T ss_pred CHHHhHHHHHHHHHhcCccccccHHHHHHHHhCCCHHHH------HH----------HHHHHHhChHhHHHHHHHhCCC-
Confidence 33456666666666655 45788888888887554 11 2577777777777777777433
Q ss_pred HcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhh
Q 026773 200 AQNPNDTEESIWCFLCEAQLYGVDEARNRFLEA 232 (233)
Q Consensus 200 ~lnP~d~e~~~~~~l~~a~Lg~~dEA~~~~l~~ 232 (233)
.+.|+.+. +.-.++...|+.+.|...+..+
T Consensus 105 s~~~~~~~---~Il~~L~~~~~~~lAL~y~~~~ 134 (226)
T PF13934_consen 105 SLIPWFPD---KILQALLRRGDPKLALRYLRAV 134 (226)
T ss_pred CCCcccHH---HHHHHHHHCCChhHHHHHHHhc
Confidence 33344332 2333455567777777766543
No 390
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=40.84 E-value=99 Score=30.40 Aligned_cols=25 Identities=12% Similarity=0.219 Sum_probs=21.3
Q ss_pred HHHcCCHHHHHHHHHHHHhhCCCCC
Q 026773 134 LFRQGDVVGSVAEFDKAIELDPRQK 158 (233)
Q Consensus 134 ~~~lGdyeeAIadfdkAIeLdP~~~ 158 (233)
--+-.+.++-|..-..|+++||+-+
T Consensus 194 AWRERnp~~RI~~A~~ALeIN~eCA 218 (556)
T KOG3807|consen 194 AWRERNPPARIKAAYQALEINNECA 218 (556)
T ss_pred HHHhcCcHHHHHHHHHHHhcCchhh
Confidence 3456788899999999999999877
No 391
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=40.45 E-value=1.2e+02 Score=24.22 Aligned_cols=66 Identities=11% Similarity=0.072 Sum_probs=46.6
Q ss_pred ccccccccchhHHHhcc-CcchHHHHHHHHhcccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 026773 86 PRGHYLQNRAPTFTRRL-FIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAI 151 (233)
Q Consensus 86 ~~~h~~~~~~~~~~r~~-~~~~a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAI 151 (233)
.+.++-...+.-+.+-. +..+...+|..+..-.+--+.+.-|..-+..+...|++++|.+.|+++|
T Consensus 60 ~~Y~nD~RylkiWi~ya~~~~~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~Gi 126 (126)
T PF08311_consen 60 ERYKNDERYLKIWIKYADLSSDPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQLGI 126 (126)
T ss_dssp GGGTT-HHHHHHHHHHHTTBSHHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred HhhcCCHHHHHHHHHHHHHccCHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHhhC
Confidence 34444333444443333 5567778888776434566889999999999999999999999999886
No 392
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=40.09 E-value=38 Score=25.36 Aligned_cols=14 Identities=21% Similarity=0.128 Sum_probs=8.1
Q ss_pred HHHHHHHHHHhhCC
Q 026773 142 GSVAEFDKAIELDP 155 (233)
Q Consensus 142 eAIadfdkAIeLdP 155 (233)
.|++...+|++.|-
T Consensus 5 ~Ai~~a~~Ave~D~ 18 (76)
T cd02681 5 DAVQFARLAVQRDQ 18 (76)
T ss_pred HHHHHHHHHHHHHH
Confidence 45556666666654
No 393
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=38.70 E-value=3.9e+02 Score=26.80 Aligned_cols=118 Identities=14% Similarity=0.082 Sum_probs=73.9
Q ss_pred chHHHHHHHHh-cccCCC-CCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHH
Q 026773 105 PSVSGIWDALT-GGNNNS-REAVVAIRRGMLLF-RQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIR 181 (233)
Q Consensus 105 ~~a~~i~~~~i-~~~l~P-~~a~Ay~~RG~a~~-~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~a 181 (233)
..+..+...+. .-.+.| ..+.++..+|.+++ .-.++++|....+|++.+.-+... ...-+. +-.-...+
T Consensus 38 ~~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~---~d~k~~-----~~~ll~~i 109 (608)
T PF10345_consen 38 ATAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRL---TDLKFR-----CQFLLARI 109 (608)
T ss_pred HHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccch---HHHHHH-----HHHHHHHH
Confidence 34455555554 223445 47889999999998 799999999999999999865321 011111 12234666
Q ss_pred HHHcCCcHHHHHHHHHHHHcCCCCH-HHHHHH--HH--HHHHc-CCHHHHHHHHHh
Q 026773 182 VSHFNRFEEGAEQFRIDVAQNPNDT-EESIWC--FL--CEAQL-YGVDEARNRFLE 231 (233)
Q Consensus 182 l~~lGryeeAi~~f~kAL~lnP~d~-e~~~~~--~l--~~a~L-g~~dEA~~~~l~ 231 (233)
+...+... |+...+++|+.--+.. ..|.|. .+ .+... +++..|.+.+..
T Consensus 110 ~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~ 164 (608)
T PF10345_consen 110 YFKTNPKA-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQS 164 (608)
T ss_pred HHhcCHHH-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHH
Confidence 66666666 9999999988655411 123333 22 12222 688888877653
No 394
>COG3014 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=38.54 E-value=90 Score=30.57 Aligned_cols=77 Identities=14% Similarity=0.112 Sum_probs=53.5
Q ss_pred HHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHHHcCCcHHHHHHHHHHH------------------------
Q 026773 144 VAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSHFNRFEEGAEQFRIDV------------------------ 199 (233)
Q Consensus 144 IadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~lGryeeAi~~f~kAL------------------------ 199 (233)
-..|+++.++=|++.. ..+|. ++.|.++...++|.+....|+.+=
T Consensus 41 ~~~y~Q~~q~~kk~~~----~il~~-------L~~Gl~a~~~~dya~S~~~ldAae~~~KqqqD~~~~S~~~A~~vGst~ 109 (449)
T COG3014 41 KKAYEQSKQFTKKKKN----ALLWD-------LQNGLSALYARDYATSLGVLDAAEQRFKQQQDTQSASTRGAGYVGATM 109 (449)
T ss_pred hhHHHHHHHhhhhhhH----HHHHh-------hhhhHHHHHhhhHHHhhhHHHHHHHHHhhhhhhheeccccccchhhhh
Confidence 3568889999888772 56676 678999999999988877775521
Q ss_pred ------HcCCCCHHH---HHHHHHHHHHcCCHHHHHHHHHh
Q 026773 200 ------AQNPNDTEE---SIWCFLCEAQLYGVDEARNRFLE 231 (233)
Q Consensus 200 ------~lnP~d~e~---~~~~~l~~a~Lg~~dEA~~~~l~ 231 (233)
+-+|++.|. .++.++-+....+++.|+-.|-.
T Consensus 110 vNDNi~~Y~g~~YE~~~~n~YkaLNYm~~nD~~~ArVEfnR 150 (449)
T COG3014 110 INDNVRAYGGNIYEGVLINYYKALNYMLLNDSAKARVEFNR 150 (449)
T ss_pred hccchhhcCchhHHHHHHHHHHHhhHHHhcchhhhHHHHHH
Confidence 113444443 24455667788888888876654
No 395
>PF01239 PPTA: Protein prenyltransferase alpha subunit repeat; InterPro: IPR002088 Protein prenylation is the posttranslational attachment of either a farnesyl group or a geranylgeranyl group via a thioether linkage (-C-S-C-) to a cysteine at or near the carboxyl terminus of the protein. Farnesyl and geranylgeranyl groups are polyisoprenes, unsaturated hydrocarbons with a multiple of five carbons; the chain is 15 carbons long in the farnesyl moiety and 20 carbons long in the geranylgeranyl moiety. There are three different protein prenyltransferases in humans: farnesyltransferase (FT) and geranylgeranyltransferase 1 (GGT1) share the same motif (the CaaX box) around the cysteine in their substrates, and are thus called CaaX prenyltransferases, whereas geranylgeranyltransferase 2 (GGT2, also called Rab geranylgeranyltransferase) recognises a different motif and is thus called a non-CaaX prenyltransferase. Protein prenyltransferases are currently known only in eukaryotes, but they are widespread, being found in vertebrates, insects, nematodes, plants, fungi and protozoa, including several parasites. Each protein consists of two subunits, alpha and beta; the alpha subunit of FT and GGT1 is encoded by the same gene, FNTA. The alpha subunit is thought to participate in a stable complex with the isoprenyl substrate; the beta subunit binds the peptide substrate. In the alpha subunits of both types of protein prenyltransferases, seven tetratricopeptide repeats are formed by pairs of helices that are stabilised by conserved intercalating residues. The alpha subunits of GGT2 in mammals and plants also have an immunoglobulin-like domain between the fifth and sixth tetratricopeptide repeat, as well as leucine-rich repeats at the carboxyl terminus. The functions of these additional domains in GGT2 are as yet undefined, but they are apparently not directly involved in the interaction with substrates and Rab escort proteins. The tetratricopeptide repeats of the alpha subunit form a right-handed superhelix, which embraces the (alpha-alpha)6 barrel of the beta subunit []. ; GO: 0008318 protein prenyltransferase activity, 0018342 protein prenylation; PDB: 1S63_A 1LD7_A 1LD8_A 2H6G_A 1SA4_A 1MZC_A 1TN6_A 2F0Y_A 2H6H_A 2H6F_A ....
Probab=38.53 E-value=87 Score=18.65 Aligned_cols=29 Identities=14% Similarity=0.064 Sum_probs=21.9
Q ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHc
Q 026773 191 GAEQFRIDVAQNPNDTEESIWCFLCEAQL 219 (233)
Q Consensus 191 Ai~~f~kAL~lnP~d~e~~~~~~l~~a~L 219 (233)
.++.-.+++..+|.+...+.++..+..++
T Consensus 2 El~~~~~~l~~~pknys~W~yR~~ll~~l 30 (31)
T PF01239_consen 2 ELEFTKKALEKDPKNYSAWNYRRWLLKQL 30 (31)
T ss_dssp HHHHHHHHHHHSTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCcccccHHHHHHHHHHHc
Confidence 45667889999999998877776665443
No 396
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=36.49 E-value=96 Score=29.74 Aligned_cols=59 Identities=8% Similarity=0.101 Sum_probs=45.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHHHcCCcHHHHHHHHHH
Q 026773 126 VAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSHFNRFEEGAEQFRID 198 (233)
Q Consensus 126 Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~lGryeeAi~~f~kA 198 (233)
........+...|.+.+|+....+++.+||=+. .. |- .+=.++..+|+--+|++.|++.
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltldpL~e-----~~-nk--------~lm~~la~~gD~is~~khyery 339 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLDPLSE-----QD-NK--------GLMASLATLGDEISAIKHYERY 339 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcChhhh-----HH-HH--------HHHHHHHHhccchhhhhHHHHH
Confidence 334556678889999999999999999999776 23 22 2556778889988888888764
No 397
>COG5536 BET4 Protein prenyltransferase, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=35.89 E-value=1.6e+02 Score=27.99 Aligned_cols=101 Identities=10% Similarity=0.073 Sum_probs=71.0
Q ss_pred CcchHHHHHHHHhcccCCCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHH
Q 026773 103 FIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQ--GDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLI 180 (233)
Q Consensus 103 ~~~~a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~l--GdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~ 180 (233)
++.......+.++ +-+|.+-..|..|-.++-.- .++..=+..-++-++.||++. --|.-+ +....-|.
T Consensus 89 ~ldneld~~~~~l--k~~PK~YqiW~HR~~~Le~~p~~~~~rEl~itkklld~DsrNy------H~W~YR--~~vl~~ie 158 (328)
T COG5536 89 LLDNELDFLDEAL--KDNPKNYQIWHHRQWMLELFPKPSWGRELFITKKLLDSDSRNY------HVWSYR--RWVLRTIE 158 (328)
T ss_pred hhhcHHHHHHHHH--hcCCchhhhhHHHHHHHHhCCCcccchhHHHHHHHhccccccc------ceeeeE--eeeeecch
Confidence 4455566677777 88999999999999888665 678888889999999999987 223200 00011122
Q ss_pred HHHHcCCcHHHHHHHHHHHHcCCCCHHHHHHHH
Q 026773 181 RVSHFNRFEEGAEQFRIDVAQNPNDTEESIWCF 213 (233)
Q Consensus 181 al~~lGryeeAi~~f~kAL~lnP~d~e~~~~~~ 213 (233)
-+.....+....++-...|+-|+.|..+|..+.
T Consensus 159 ~~~N~S~~k~e~eytt~~I~tdi~N~SaW~~r~ 191 (328)
T COG5536 159 DLFNFSDLKHELEYTTSLIETDIYNNSAWHHRY 191 (328)
T ss_pred hhccchhHHHHHHhHHHHHhhCCCChHHHHHHH
Confidence 224455556667788889999999988876663
No 398
>cd02656 MIT MIT: domain contained within Microtubule Interacting and Trafficking molecules. The MIT domain is found in sorting nexins, the nuclear thiol protease PalBH, the AAA protein spastin and archaebacterial proteins with similar domain architecture, vacuolar sorting proteins and others. The molecular function of the MIT domain is unclear.
Probab=35.29 E-value=66 Score=23.06 Aligned_cols=32 Identities=6% Similarity=0.058 Sum_probs=16.6
Q ss_pred cHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHc
Q 026773 188 FEEGAEQFRIDVAQNPNDTEESIWCFLCEAQL 219 (233)
Q Consensus 188 yeeAi~~f~kAL~lnP~d~e~~~~~~l~~a~L 219 (233)
|.+|++.|..+++..|+.......+..+...+
T Consensus 29 Y~~a~e~l~~~~~~~~~~~~k~~l~~k~~~yl 60 (75)
T cd02656 29 YKEALDYLLQALKAEKEPKLRKLLRKKVKEYL 60 (75)
T ss_pred HHHHHHHHHHHhccCCCHHHHHHHHHHHHHHH
Confidence 44555555666666776444344444444333
No 399
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=34.96 E-value=87 Score=17.62 Aligned_cols=27 Identities=19% Similarity=0.073 Sum_probs=20.9
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 026773 127 AIRRGMLLFRQGDVVGSVAEFDKAIEL 153 (233)
Q Consensus 127 y~~RG~a~~~lGdyeeAIadfdkAIeL 153 (233)
|..+=..+.+.|++++|++.|++..+.
T Consensus 3 ~n~li~~~~~~~~~~~a~~~~~~M~~~ 29 (35)
T TIGR00756 3 YNTLIDGLCKAGRVEEALELFKEMLER 29 (35)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence 333445688999999999999997764
No 400
>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=34.57 E-value=67 Score=33.83 Aligned_cols=86 Identities=16% Similarity=0.239 Sum_probs=66.9
Q ss_pred HHHHHHHHhcccCCC----CCHHHHHHHHHHHHH--cCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHH
Q 026773 107 VSGIWDALTGGNNNS----REAVVAIRRGMLLFR--QGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLI 180 (233)
Q Consensus 107 a~~i~~~~i~~~l~P----~~a~Ay~~RG~a~~~--lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~ 180 (233)
+.--|+..+ .+-| +.+....++..++.+ .|+|..++.+.+-|++..|... .. .+.|+.
T Consensus 72 ~~~~~~~~~--~llp~~~~~~a~~~~~~~s~~m~~~l~~~~~~~~E~~la~~~~p~i~-----~~---------Ll~r~~ 135 (748)
T KOG4151|consen 72 AMFRYDCAI--KLLPKDHHVVATLRSNQASCYMQLGLGEYPKAIPECELALESQPRIS-----KA---------LLKRAR 135 (748)
T ss_pred cchhhhhhh--eeccccchhhhhHHHHHHHHHhhcCccchhhhcCchhhhhhccchHH-----HH---------Hhhhhh
Confidence 333466666 4445 555666677766665 5799999999999999999766 33 345899
Q ss_pred HHHHcCCcHHHHHHHHHHHHcCCCCHHH
Q 026773 181 RVSHFNRFEEGAEQFRIDVAQNPNDTEE 208 (233)
Q Consensus 181 al~~lGryeeAi~~f~kAL~lnP~d~e~ 208 (233)
.|..+++.+-|+++.......+|++.++
T Consensus 136 ~y~al~k~d~a~rdl~i~~~~~p~~~~~ 163 (748)
T KOG4151|consen 136 KYEALNKLDLAVRDLRIVEKMDPSNVSA 163 (748)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCCcchH
Confidence 9999999999999999999999998654
No 401
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=34.30 E-value=3.5e+02 Score=29.31 Aligned_cols=70 Identities=11% Similarity=-0.004 Sum_probs=56.8
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHHHcCCcHHHHHHHHHHHHc
Q 026773 123 EAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSHFNRFEEGAEQFRIDVAQ 201 (233)
Q Consensus 123 ~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~lGryeeAi~~f~kAL~l 201 (233)
.++.-..+|.+....||+++|++..+.|+..=|.+. ++.. +-.+...|.+..-.|++++|...-..+.++
T Consensus 457 ~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~------~~~r---~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~ 526 (894)
T COG2909 457 LAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAA------YRSR---IVALSVLGEAAHIRGELTQALALMQQAEQM 526 (894)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhccccc------chhh---hhhhhhhhHHHHHhchHHHHHHHHHHHHHH
Confidence 346677899999999999999999999999999876 2222 123345899999999999999988888777
No 402
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=34.30 E-value=3.5e+02 Score=28.21 Aligned_cols=91 Identities=7% Similarity=0.039 Sum_probs=62.2
Q ss_pred chhHHHhccCcchHHHHHHHHhcccCCCC-CHHHHHHHHHHH-HHcCCHHHHHHHHHHH-----HhhCCCCCCCccchhh
Q 026773 94 RAPTFTRRLFIPSVSGIWDALTGGNNNSR-EAVVAIRRGMLL-FRQGDVVGSVAEFDKA-----IELDPRQKISGKGAYR 166 (233)
Q Consensus 94 ~~~~~~r~~~~~~a~~i~~~~i~~~l~P~-~a~Ay~~RG~a~-~~lGdyeeAIadfdkA-----IeLdP~~~~~~~~~y~ 166 (233)
....+.+++-+..|.+.+..+. +++|. ||-+-..+=..+ .+..+|+==|+.++.. +.+=|+.+ |
T Consensus 348 ~m~~l~~RGC~rTA~E~cKlll--sLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~e~~n~l~~~PN~~------y- 418 (665)
T KOG2422|consen 348 YMQSLAQRGCWRTALEWCKLLL--SLDPSEDPLGILYLIDIYALRAREYQWIIELSNEPENMNKLSQLPNFG------Y- 418 (665)
T ss_pred HHHHHHhcCChHHHHHHHHHHh--hcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHHHhhccHhhcCCch------H-
Confidence 4567889999999999998888 89998 775544443333 3455565555555544 45557665 3
Q ss_pred hhhhhhhhhhhhHHHHHHcCCc-----HHHHHHHHHHHHcCC
Q 026773 167 FTISIVGIILKKLIRVSHFNRF-----EEGAEQFRIDVAQNP 203 (233)
Q Consensus 167 ~~~~~~~a~~~rG~al~~lGry-----eeAi~~f~kAL~lnP 203 (233)
..+++++.+..- +.|..++.+|++.-|
T Consensus 419 ----------S~AlA~f~l~~~~~~~rqsa~~~l~qAl~~~P 450 (665)
T KOG2422|consen 419 ----------SLALARFFLRKNEEDDRQSALNALLQALKHHP 450 (665)
T ss_pred ----------HHHHHHHHHhcCChhhHHHHHHHHHHHHHhCc
Confidence 256666666544 458899999999888
No 403
>PF03745 DUF309: Domain of unknown function (DUF309); InterPro: IPR005500 This family consists of eubacterial and archaebacterial proteins of unknown function. The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.; PDB: 2CXD_B 2CWY_A 2IJQ_B.
Probab=33.99 E-value=1.7e+02 Score=20.78 Aligned_cols=52 Identities=17% Similarity=0.052 Sum_probs=37.9
Q ss_pred hhHHHHHHcCCcHHHHHHHHHHHHcCCCCHHHHHHHHHH-------HHHcCCHHHHHHHH
Q 026773 177 KKLIRVSHFNRFEEGAEQFRIDVAQNPNDTEESIWCFLC-------EAQLYGVDEARNRF 229 (233)
Q Consensus 177 ~rG~al~~lGryeeAi~~f~kAL~lnP~d~e~~~~~~l~-------~a~Lg~~dEA~~~~ 229 (233)
..|+.++..|+|=||-+.++..-...|++ +...+.++. ..+.|+.+.|...+
T Consensus 4 ~~~~~l~n~g~f~EaHEvlE~~W~~~~~~-~~~~lqglIq~A~a~~h~~~gn~~gA~~l~ 62 (62)
T PF03745_consen 4 EEGIELFNAGDFFEAHEVLEELWKAAPGP-ERDFLQGLIQLAVALYHLRRGNPRGARRLL 62 (62)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHCCCT-CC-HHHHHHHHHHHHHHHHHHHCTSHHHHHHHH
T ss_pred HHHHHHHcCCCHHHhHHHHHHHHHHCCcc-hHHHHHHHHHHHHHHHHHHhCCHHHHHHhC
Confidence 37999999999999999999998877665 455555533 34678888887643
No 404
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=33.93 E-value=3.6e+02 Score=24.36 Aligned_cols=99 Identities=11% Similarity=-0.010 Sum_probs=56.7
Q ss_pred HHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHHHcCCcH--HHHHHHHHHHH-c-CCCCHH
Q 026773 132 MLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSHFNRFE--EGAEQFRIDVA-Q-NPNDTE 207 (233)
Q Consensus 132 ~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~lGrye--eAi~~f~kAL~-l-nP~d~e 207 (233)
.-++..|||++|++..+.||+.+=.-|..= .-.+.--+++-+.+.+...+..|+.- .-...+..... . -|+...
T Consensus 91 vW~~D~Gd~~~AL~ia~yAI~~~l~~Pd~f--~R~~~t~vaeev~~~A~~~~~ag~~~e~~~~~~~~~l~~~~dmpd~vr 168 (230)
T PHA02537 91 VWRFDIGDFDGALEIAEYALEHGLTMPDQF--RRTLANFVAEEVANAALKAASAGESVEPYFLRVFLDLTTEWDMPDEVR 168 (230)
T ss_pred eeeeeccCHHHHHHHHHHHHHcCCCCCccc--cCCchHHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHhcCCCChHHH
Confidence 345778999999999999999984333100 01111134677777888888888742 22223333221 1 233344
Q ss_pred HHHHHHHHHHHc-----------CCHHHHHHHHHhh
Q 026773 208 ESIWCFLCEAQL-----------YGVDEARNRFLEA 232 (233)
Q Consensus 208 ~~~~~~l~~a~L-----------g~~dEA~~~~l~~ 232 (233)
+-++...++..+ ++..+|...+..+
T Consensus 169 AKl~K~~G~~llr~~~g~~~~d~~~l~~Al~~L~rA 204 (230)
T PHA02537 169 AKLYKAAGYLLLRNEKGEPIGDAETLQLALALLQRA 204 (230)
T ss_pred HHHHHHHHHHHhhcccCCCccCcccHHHHHHHHHHH
Confidence 445555555442 3556788776653
No 405
>PF15469 Sec5: Exocyst complex component Sec5
Probab=33.30 E-value=2e+02 Score=24.00 Aligned_cols=73 Identities=16% Similarity=0.170 Sum_probs=39.6
Q ss_pred HHcCCHHHHHHHHHHHHhhCCCCCCCccchhh---hhh--hhhhhhhhhHHHHHHc----CCcHHHHHHHHHHHHcCCCC
Q 026773 135 FRQGDVVGSVAEFDKAIELDPRQKISGKGAYR---FTI--SIVGIILKKLIRVSHF----NRFEEGAEQFRIDVAQNPND 205 (233)
Q Consensus 135 ~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~---~~~--~~~~a~~~rG~al~~l----GryeeAi~~f~kAL~lnP~d 205 (233)
...|||+.++.+|.+|-.+--+... +...+ |.. .++.-+ +..++-.+ ...++..+..+..++++|+.
T Consensus 97 i~~~dy~~~i~dY~kak~l~~~~~~--~~~vf~~v~~eve~ii~~~--r~~l~~~L~~~~~s~~~~~~~i~~Ll~L~~~~ 172 (182)
T PF15469_consen 97 IKKGDYDQAINDYKKAKSLFEKYKQ--QVPVFQKVWSEVEKIIEEF--REKLWEKLLSPPSSQEEFLKLIRKLLELNVEE 172 (182)
T ss_pred HHcCcHHHHHHHHHHHHHHHHHhhh--hHHHHHHHHHHHHHHHHHH--HHHHHHHHhCCCCCHHHHHHHHHHHHhCCCCC
Confidence 5679999999999999988644310 00111 110 111111 11222222 35667777777788888854
Q ss_pred HHHHHH
Q 026773 206 TEESIW 211 (233)
Q Consensus 206 ~e~~~~ 211 (233)
-..|.|
T Consensus 173 dPi~~~ 178 (182)
T PF15469_consen 173 DPIWYW 178 (182)
T ss_pred CHHHHH
Confidence 434444
No 406
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=33.28 E-value=1.3e+02 Score=27.79 Aligned_cols=51 Identities=14% Similarity=0.086 Sum_probs=44.8
Q ss_pred HHHHHcCCcHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 026773 180 IRVSHFNRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFL 230 (233)
Q Consensus 180 ~al~~lGryeeAi~~f~kAL~lnP~d~e~~~~~~l~~a~Lg~~dEA~~~~l 230 (233)
..+...++..+|+.+.+.-++-+|.|+.....++-.++-.|+++.|...+.
T Consensus 9 seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~ 59 (273)
T COG4455 9 SELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLN 59 (273)
T ss_pred HHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHH
Confidence 457788999999999999999999999888888888888999999987654
No 407
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=33.07 E-value=78 Score=25.80 Aligned_cols=47 Identities=15% Similarity=0.125 Sum_probs=35.8
Q ss_pred hHHHHHHcCCcHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 026773 178 KLIRVSHFNRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQLYGVDEARNRF 229 (233)
Q Consensus 178 rG~al~~lGryeeAi~~f~kAL~lnP~d~e~~~~~~l~~a~Lg~~dEA~~~~ 229 (233)
|-..+...|+|++|....+.. | .|+.--|.++|.-++|--+++..++
T Consensus 45 RlsSLmNrG~Yq~Al~l~~~~----~-~pdlepw~ALce~rlGl~s~l~~rl 91 (115)
T TIGR02508 45 RLSSLMNRGDYQSALQLGNKL----C-YPDLEPWLALCEWRLGLGSALESRL 91 (115)
T ss_pred HHHHHHccchHHHHHHhcCCC----C-CchHHHHHHHHHHhhccHHHHHHHH
Confidence 788899999999999877654 2 3444468888999999777766665
No 408
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=32.85 E-value=2.1e+02 Score=25.27 Aligned_cols=63 Identities=13% Similarity=0.150 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHHHcCCcHHHHHHH
Q 026773 125 VVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSHFNRFEEGAEQF 195 (233)
Q Consensus 125 ~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~lGryeeAi~~f 195 (233)
..-..+|..++..|++++|++.|+++...--+.. + |. =...+.-..-.+...+|+.++.+..-
T Consensus 179 ~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~eg-----W--~~-l~~~~l~~l~~Ca~~~~~~~~~l~~~ 241 (247)
T PF11817_consen 179 YLSLEMAEEYFRLGDYDKALKLLEPAASSYRREG-----W--WS-LLTEVLWRLLECAKRLGDVEDYLTTS 241 (247)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCC-----c--HH-HHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 4445789999999999999999999965544333 2 21 11223334667777788877766544
No 409
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=32.80 E-value=59 Score=29.33 Aligned_cols=35 Identities=20% Similarity=0.248 Sum_probs=27.7
Q ss_pred HHHHHHHHHHHH---------HcCCHHHHHHHHHHHHhhCCCCC
Q 026773 124 AVVAIRRGMLLF---------RQGDVVGSVAEFDKAIELDPRQK 158 (233)
Q Consensus 124 a~Ay~~RG~a~~---------~lGdyeeAIadfdkAIeLdP~~~ 158 (233)
+.-|-..|.++. ..++.+.|++.+++|+++||+-.
T Consensus 169 AKl~K~~G~~llr~~~g~~~~d~~~l~~Al~~L~rA~~l~~k~G 212 (230)
T PHA02537 169 AKLYKAAGYLLLRNEKGEPIGDAETLQLALALLQRAFQLNDKCG 212 (230)
T ss_pred HHHHHHHHHHHhhcccCCCccCcccHHHHHHHHHHHHHhCCCCC
Confidence 455666777774 34688899999999999999866
No 410
>TIGR00985 3a0801s04tom mitochondrial import receptor subunit translocase of outer membrane 20 kDa subunit.
Probab=32.08 E-value=74 Score=26.96 Aligned_cols=29 Identities=28% Similarity=0.471 Sum_probs=26.8
Q ss_pred HHHHHHHHHcC-CHHHHHHHHHHHHhhCCC
Q 026773 128 IRRGMLLFRQG-DVVGSVAEFDKAIELDPR 156 (233)
Q Consensus 128 ~~RG~a~~~lG-dyeeAIadfdkAIeLdP~ 156 (233)
..+|-.+...| +.++|+.+|-+||..-|+
T Consensus 94 V~~GE~L~~~g~~~~ega~hf~nAl~Vc~q 123 (148)
T TIGR00985 94 VQLGEELMAQGTNVDEGAVHFYNALKVYPQ 123 (148)
T ss_pred HHHHHHHHhCCCchHHHHHHHHHHHHhCCC
Confidence 46899999999 999999999999999985
No 411
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=31.88 E-value=1e+02 Score=17.60 Aligned_cols=28 Identities=18% Similarity=0.035 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 026773 126 VAIRRGMLLFRQGDVVGSVAEFDKAIEL 153 (233)
Q Consensus 126 Ay~~RG~a~~~lGdyeeAIadfdkAIeL 153 (233)
.|...=.++...|++++|.+.|+.-.+.
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~~ 30 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKEQ 30 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 4555567888999999999999987663
No 412
>PF03745 DUF309: Domain of unknown function (DUF309); InterPro: IPR005500 This family consists of eubacterial and archaebacterial proteins of unknown function. The proteins contain a motif HXXXEXX(W/Y) where X can be any amino acid. This motif is likely to be functionally important and may be involved in metal binding.; PDB: 2CXD_B 2CWY_A 2IJQ_B.
Probab=31.36 E-value=1.9e+02 Score=20.53 Aligned_cols=60 Identities=13% Similarity=0.119 Sum_probs=41.6
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHHHcCCcHHHHHHH
Q 026773 128 IRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSHFNRFEEGAEQF 195 (233)
Q Consensus 128 ~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~lGryeeAi~~f 195 (233)
...|..++..|+|=+|-+.++..-.-.|+.. ...++ .-|-+--|..+...|+...|...+
T Consensus 3 ~~~~~~l~n~g~f~EaHEvlE~~W~~~~~~~-----~~~lq---glIq~A~a~~h~~~gn~~gA~~l~ 62 (62)
T PF03745_consen 3 LEEGIELFNAGDFFEAHEVLEELWKAAPGPE-----RDFLQ---GLIQLAVALYHLRRGNPRGARRLL 62 (62)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHCCCT-CCH-----HHHHH---HHHHHHHHHHHHHCTSHHHHHHHH
T ss_pred HHHHHHHHcCCCHHHhHHHHHHHHHHCCcch-----HHHHH---HHHHHHHHHHHHHhCCHHHHHHhC
Confidence 4678999999999999999999997666544 44444 122334566677778888887653
No 413
>cd02679 MIT_spastin MIT: domain contained within Microtubule Interacting and Trafficking molecules. This MIT domain sub-family is found in the AAA protein spastin, a probable ATPase involved in the assembly or function of nuclear protein complexes; spastins might also be involved in microtubule dynamics. The molecular function of the MIT domain is unclear.
Probab=31.06 E-value=60 Score=24.57 Aligned_cols=18 Identities=28% Similarity=0.337 Sum_probs=11.7
Q ss_pred CCHHHHHHHHHHHHhhCC
Q 026773 138 GDVVGSVAEFDKAIELDP 155 (233)
Q Consensus 138 GdyeeAIadfdkAIeLdP 155 (233)
+-|+.|.+..++||+.|-
T Consensus 3 ~~~~~A~~~I~kaL~~dE 20 (79)
T cd02679 3 GYYKQAFEEISKALRADE 20 (79)
T ss_pred hHHHHHHHHHHHHhhhhh
Confidence 346667777777776664
No 414
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=29.55 E-value=3.2e+02 Score=28.78 Aligned_cols=36 Identities=17% Similarity=0.119 Sum_probs=25.6
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 026773 119 NNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELD 154 (233)
Q Consensus 119 l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLd 154 (233)
.+.++..=|-.+|.+....|++.-|.++|.+|-.+.
T Consensus 661 ~e~~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d~~ 696 (794)
T KOG0276|consen 661 VEANSEVKWRQLGDAALSAGELPLASECFLRARDLG 696 (794)
T ss_pred HhhcchHHHHHHHHHHhhcccchhHHHHHHhhcchh
Confidence 345667777777777777777777777777775443
No 415
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=29.44 E-value=4e+02 Score=26.69 Aligned_cols=67 Identities=12% Similarity=0.025 Sum_probs=47.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHHHcCCcHHHHHHHH
Q 026773 125 VVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSHFNRFEEGAEQFR 196 (233)
Q Consensus 125 ~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~lGryeeAi~~f~ 196 (233)
......++..+-.|++..|....+.+.+...+.+ .-.+..-..-+.+-.|+.+...|+.+.|+..|.
T Consensus 362 ~~~~y~~~~~~~~~~~~~a~~~l~~~~~~~~~~~-----~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~ 428 (608)
T PF10345_consen 362 YLLFYQIWCNFIRGDWSKATQELEFMRQLCQRSP-----SKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQ 428 (608)
T ss_pred HHHHHHHHHHHHCcCHHHHHHHHHHHHHHHhcCc-----cchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHh
Confidence 3456778888999999999999998887754433 100000001233458999999999999999998
No 416
>PF09797 NatB_MDM20: N-acetyltransferase B complex (NatB) non catalytic subunit; InterPro: IPR019183 This is the non-catalytic subunit of the N-terminal acetyltransferase B complex (NatB). The NatB complex catalyses the acetylation of the amino-terminal methionine residue of all proteins beginning with Met-Asp or Met-Glu and of some proteins beginning with Met-Asn or Met-Met. In Saccharomyces cerevisiae (Baker's yeast) this subunit is called MDM20 and in Schizosaccharomyces pombe (Fission yeast) it is called Arm1. NatB acetylates the Tpm1 protein and regulates and tropomyocin-actin interactions. This subunit is required by the NatB complex for the N-terminal acetylation of Tpm1 [].
Probab=29.05 E-value=1.5e+02 Score=27.44 Aligned_cols=47 Identities=6% Similarity=0.003 Sum_probs=41.2
Q ss_pred cCCcHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHh
Q 026773 185 FNRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLE 231 (233)
Q Consensus 185 lGryeeAi~~f~kAL~lnP~d~e~~~~~~l~~a~Lg~~dEA~~~~l~ 231 (233)
.+..-+|+...+.+++.+|.|.+..+|.-..+..+|-.+.|...|..
T Consensus 196 ~~~l~~Ai~lLE~~l~~s~~n~~~~LlLvrlY~~LG~~~~A~~~~~~ 242 (365)
T PF09797_consen 196 SEYLLQAIALLEHALKKSPHNYQLKLLLVRLYSLLGAGSLALEHYES 242 (365)
T ss_pred HHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 34556799999999999999999999998899999999999988754
No 417
>KOG4056 consensus Translocase of outer mitochondrial membrane complex, subunit TOM20 [Intracellular trafficking, secretion, and vesicular transport]
Probab=28.87 E-value=88 Score=26.52 Aligned_cols=31 Identities=19% Similarity=0.242 Sum_probs=28.2
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCC
Q 026773 128 IRRGMLLFRQGDVVGSVAEFDKAIELDPRQK 158 (233)
Q Consensus 128 ~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~ 158 (233)
..+|-.++.+|+++++.+++-.||.+-|.-.
T Consensus 85 v~lGE~L~~qg~~e~ga~h~~nAi~vcgqpa 115 (143)
T KOG4056|consen 85 VQLGEELLAQGNEEEGAEHLANAIVVCGQPA 115 (143)
T ss_pred HHhHHHHHHccCHHHHHHHHHHHHhhcCCHH
Confidence 5799999999999999999999999998643
No 418
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=28.26 E-value=1.8e+02 Score=32.53 Aligned_cols=117 Identities=13% Similarity=0.012 Sum_probs=77.6
Q ss_pred HHHHHHHhcccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHHHcCC
Q 026773 108 SGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSHFNR 187 (233)
Q Consensus 108 ~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~lGr 187 (233)
...++..- +.+.|..+..|..+.+.+.+.||+++|+..-.+|.-+.-+.. |++..- -.-.|.++.+..+..++
T Consensus 958 lnl~~~v~-~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~--g~ds~~----t~~~y~nlal~~f~~~~ 1030 (1236)
T KOG1839|consen 958 LNLLNNVM-GVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVL--GKDSPN----TKLAYGNLALYEFAVKN 1030 (1236)
T ss_pred hhHHHHhh-hhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhc--cCCCHH----HHHHhhHHHHHHHhccC
Confidence 33444433 358899999999999999999999999999998887765443 222211 12245578888888889
Q ss_pred cHHHHHHHHHHHHc-----CCCCHHHHH---HHHHHHHHcCCHHHHHHHHHh
Q 026773 188 FEEGAEQFRIDVAQ-----NPNDTEESI---WCFLCEAQLYGVDEARNRFLE 231 (233)
Q Consensus 188 yeeAi~~f~kAL~l-----nP~d~e~~~---~~~l~~a~Lg~~dEA~~~~l~ 231 (233)
...|+..+.++.++ .|+.|+... +..+.+-.++..+-|......
T Consensus 1031 ~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~ 1082 (1236)
T KOG1839|consen 1031 LSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLES 1082 (1236)
T ss_pred ccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHH
Confidence 99999999998876 344444322 222222234556666655543
No 419
>PF07980 SusD: SusD family; InterPro: IPR012944 This domain occurs in several hypothetical proteins. It also occurs in RagB, Q9ZA59 from SWISSPROT, a protein involved in signalling [] and SusD, Q8A1G2 from SWISSPROT, an outer membrane protein involved in nutrient binding [].; PDB: 3IHV_A 3LEW_A 3JQ1_A 3JQ0_A 3NQP_B 3SNX_A 3L22_A 3OTN_A 3IV0_A 3QNK_C ....
Probab=28.08 E-value=1e+02 Score=26.05 Aligned_cols=31 Identities=19% Similarity=0.187 Sum_probs=28.0
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 026773 122 REAVVAIRRGMLLFRQGDVVGSVAEFDKAIE 152 (233)
Q Consensus 122 ~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIe 152 (233)
+.+++|..++-|+.++|+.++|+++.++.-+
T Consensus 131 R~aEvyL~~AEA~~~~g~~~~A~~~lN~vR~ 161 (266)
T PF07980_consen 131 RLAEVYLIYAEALARLGNTAEALEYLNQVRK 161 (266)
T ss_dssp EHHHHHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred EHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 4689999999999999999999999999553
No 420
>cd02684 MIT_2 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with an n-terminal serine/threonine kinase domain. The molecular function of the MIT domain is unclear.
Probab=28.02 E-value=74 Score=23.46 Aligned_cols=16 Identities=19% Similarity=0.219 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHhhCC
Q 026773 140 VVGSVAEFDKAIELDP 155 (233)
Q Consensus 140 yeeAIadfdkAIeLdP 155 (233)
.++|+....+|++.|-
T Consensus 3 l~~Ai~lv~~Av~~D~ 18 (75)
T cd02684 3 LEKAIALVVQAVKKDQ 18 (75)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4567777777766664
No 421
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=27.89 E-value=2.1e+02 Score=23.45 Aligned_cols=49 Identities=14% Similarity=0.237 Sum_probs=31.9
Q ss_pred hhHHHHHHcCCcHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 026773 177 KKLIRVSHFNRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFL 230 (233)
Q Consensus 177 ~rG~al~~lGryeeAi~~f~kAL~lnP~d~e~~~~~~l~~a~Lg~~dEA~~~~l 230 (233)
-|-..+...|+|++| +....... .|+--=|.++|..++|--+++..++.
T Consensus 45 Ir~~sLmNrG~Yq~A---Ll~~~~~~--~pdL~p~~AL~a~klGL~~~~e~~l~ 93 (116)
T PF09477_consen 45 IRLSSLMNRGDYQEA---LLLPQCHC--YPDLEPWAALCAWKLGLASALESRLT 93 (116)
T ss_dssp HHHHHHHHTT-HHHH---HHHHTTS----GGGHHHHHHHHHHCT-HHHHHHHHH
T ss_pred HHHHHHHhhHHHHHH---HHhcccCC--CccHHHHHHHHHHhhccHHHHHHHHH
Confidence 378889999999999 33333332 33333577789999998887777765
No 422
>PF07980 SusD: SusD family; InterPro: IPR012944 This domain occurs in several hypothetical proteins. It also occurs in RagB, Q9ZA59 from SWISSPROT, a protein involved in signalling [] and SusD, Q8A1G2 from SWISSPROT, an outer membrane protein involved in nutrient binding [].; PDB: 3IHV_A 3LEW_A 3JQ1_A 3JQ0_A 3NQP_B 3SNX_A 3L22_A 3OTN_A 3IV0_A 3QNK_C ....
Probab=27.48 E-value=73 Score=26.95 Aligned_cols=31 Identities=10% Similarity=0.040 Sum_probs=28.6
Q ss_pred hhhhhhhhhHHHHHHcCCcHHHHHHHHHHHH
Q 026773 170 SIVGIILKKLIRVSHFNRFEEGAEQFRIDVA 200 (233)
Q Consensus 170 ~~~~a~~~rG~al~~lGryeeAi~~f~kAL~ 200 (233)
+..++|+.++-++.++|+.++|++++++.-+
T Consensus 131 R~aEvyL~~AEA~~~~g~~~~A~~~lN~vR~ 161 (266)
T PF07980_consen 131 RLAEVYLIYAEALARLGNTAEALEYLNQVRK 161 (266)
T ss_dssp EHHHHHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred EHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 7799999999999999999999999998654
No 423
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=27.32 E-value=2.2e+02 Score=30.88 Aligned_cols=89 Identities=13% Similarity=0.041 Sum_probs=65.7
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHHHc----C---CcHHHHHHHHHHHHcCC
Q 026773 131 GMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSHF----N---RFEEGAEQFRIDVAQNP 203 (233)
Q Consensus 131 G~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~l----G---ryeeAi~~f~kAL~lnP 203 (233)
..+...-+.|++|+..|.|.-+-=|.-.+ .+ +|....|+++... | .+++|+..|++. .-.|
T Consensus 482 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 549 (932)
T PRK13184 482 PDAFLAEKLYDQALIFYRRIRESFPGRKE----GY-------EAQFRLGITLLEKASEQGDPRDFTQALSEFSYL-HGGV 549 (932)
T ss_pred cHHHHhhHHHHHHHHHHHHHhhcCCCccc----ch-------HHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHh-cCCC
Confidence 45566678899999999988777776552 21 2445578887654 2 578888888764 4467
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHh
Q 026773 204 NDTEESIWCFLCEAQLYGVDEARNRFLE 231 (233)
Q Consensus 204 ~d~e~~~~~~l~~a~Lg~~dEA~~~~l~ 231 (233)
.-|-.|+..++++-.+|+++|.+.+++-
T Consensus 550 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 577 (932)
T PRK13184 550 GAPLEYLGKALVYQRLGEYNEEIKSLLL 577 (932)
T ss_pred CCchHHHhHHHHHHHhhhHHHHHHHHHH
Confidence 7777788888889999999999988864
No 424
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=26.70 E-value=5.3e+02 Score=26.94 Aligned_cols=93 Identities=11% Similarity=0.136 Sum_probs=66.2
Q ss_pred cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-----hhCCCCCC-Cccchhhhh---h-hhhhhhhhhHHHHHHcCC
Q 026773 118 NNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAI-----ELDPRQKI-SGKGAYRFT---I-SIVGIILKKLIRVSHFNR 187 (233)
Q Consensus 118 ~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAI-----eLdP~~~~-~~~~~y~~~---~-~~~~a~~~rG~al~~lGr 187 (233)
.-.|-+.+.....+.+..++||.+-|-...+|+| .+.|.+.. +|++..=+. + ++.-++..-=..+..-|=
T Consensus 278 ~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cRL~y~~~eNR~FyL~l~r~m~~l~~RGC 357 (665)
T KOG2422|consen 278 ISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCRLPYIYPENRQFYLALFRYMQSLAQRGC 357 (665)
T ss_pred ccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhccccccccccccCcccchhhHHHHHHHHHHHHHHHhcCC
Confidence 4568899999999999999999998888777776 34566542 233321111 1 334444455556677899
Q ss_pred cHHHHHHHHHHHHcCCC-CHHHHH
Q 026773 188 FEEGAEQFRIDVAQNPN-DTEESI 210 (233)
Q Consensus 188 yeeAi~~f~kAL~lnP~-d~e~~~ 210 (233)
+..|.+.....+.++|. ||-+..
T Consensus 358 ~rTA~E~cKlllsLdp~eDPl~~l 381 (665)
T KOG2422|consen 358 WRTALEWCKLLLSLDPSEDPLGIL 381 (665)
T ss_pred hHHHHHHHHHHhhcCCcCCchhHH
Confidence 99999999999999998 775433
No 425
>PF02064 MAS20: MAS20 protein import receptor; InterPro: IPR002056 Virtually all mitochondrial precursors are imported via the same mechanism []: precursors first bind to receptors on the mitochondrial surface, then insert into the translocation channel in the outer membrane. Many outer-membrane proteins participate in the early stages of import, four of which (MAS20, MAS22, MAS37 and MAS70) are components of the receptor. MAS20, which forms a subcomplex with MAS22, seems to interact with most or all mitochondrial precursors, suggesting that the protein binds directly to mitochondrial targeting sequences. The MAS37 and MAS70 components also form a subcomplex, the two subcomplexes possibly binding via their trans- membrane (TM) regions - the TM region of MAS70 promotes oligomerisation of attatched protein domains and shares sequence similarity with the TM region of MAS20 []. MAS20 is also known as TOM20.; GO: 0006605 protein targeting, 0006886 intracellular protein transport, 0005742 mitochondrial outer membrane translocase complex; PDB: 3AX3_A 3AWR_B 2V1S_A 3AX5_C 3AX2_C 1OM2_A 2V1T_B.
Probab=26.64 E-value=94 Score=25.35 Aligned_cols=31 Identities=19% Similarity=0.221 Sum_probs=26.6
Q ss_pred hhhHHHHHHcCCcHHHHHHHHHHHHcCCCCH
Q 026773 176 LKKLIRVSHFNRFEEGAEQFRIDVAQNPNDT 206 (233)
Q Consensus 176 ~~rG~al~~lGryeeAi~~f~kAL~lnP~d~ 206 (233)
..+|-.+...|++++|+..|-+|+.+-|+-.
T Consensus 67 V~lGE~L~~~G~~~~aa~hf~nAl~V~~qP~ 97 (121)
T PF02064_consen 67 VQLGEQLLAQGDYEEAAEHFYNALKVCPQPA 97 (121)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHHHHTSSSHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHhCCCHH
Confidence 3589999999999999999999999999743
No 426
>PF13830 DUF4192: Domain of unknown function (DUF4192)
Probab=26.58 E-value=2e+02 Score=26.36 Aligned_cols=54 Identities=20% Similarity=0.284 Sum_probs=46.0
Q ss_pred chHHHHHHHHhcccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCC
Q 026773 105 PSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQK 158 (233)
Q Consensus 105 ~~a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~ 158 (233)
..+..+|..+...--.|--+++....|.+....|+-..|-...++|++.+|++.
T Consensus 255 ~~a~~lw~~~~r~~~~~~ra~~l~l~a~~a~~~g~g~~A~~al~~a~~~~p~~~ 308 (324)
T PF13830_consen 255 QAAERLWRALARRLPGPWRAAALALLAWAAWLRGDGALAGVALDRALEADPDHS 308 (324)
T ss_pred hHHHHHHHHHHHhcCCccchHHHHHHHHHHHhcCCchHHHHHHHHHHhhCCCCc
Confidence 567788888763234456789999999999999999999999999999999877
No 427
>PF06466 PCAF_N: PCAF (P300/CBP-associated factor) N-terminal domain; InterPro: IPR009464 This region is spliced out of Q92830 from SWISSPROT isoform 2. It is predicted to be of a mixed alpha/beta fold - though predominantly helical.; GO: 0004402 histone acetyltransferase activity, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=25.48 E-value=70 Score=29.45 Aligned_cols=40 Identities=30% Similarity=0.580 Sum_probs=28.1
Q ss_pred hHhhHhHhhhhhhhhhhhhHhhhhhccCCCCCchhhhHHhhhhccCCcchhhcc
Q 026773 26 HLHQLYYYKFCIFFQFTSMALTQHVLKPTINPPLYSFHRSLLTSKAPLSVQTHI 79 (233)
Q Consensus 26 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (233)
-.+|.|||.| +...-.+.+ ..+|+|++|| |++|+-++++.
T Consensus 108 dtkqvy~yl~----klLrKcIl~-~~~pvie~pl---------G~PPFE~PsI~ 147 (252)
T PF06466_consen 108 DTKQVYFYLF----KLLRKCILQ-MTKPVIEGPL---------GKPPFEKPSIE 147 (252)
T ss_pred hHHHHHHHHH----HHHHHHHHh-hCCCcccCCC---------CCCCCCCccHH
Confidence 3678998865 444444444 6799999997 57887776654
No 428
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=24.91 E-value=4e+02 Score=30.06 Aligned_cols=61 Identities=15% Similarity=0.137 Sum_probs=46.1
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHHHcCCcHHHHHHHHHHHH
Q 026773 121 SREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSHFNRFEEGAEQFRIDVA 200 (233)
Q Consensus 121 P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~lGryeeAi~~f~kAL~ 200 (233)
-+.+++|.++|.+..+.|...+||+.|=|| +++ ..+ ++.-.+-...|.||+=+..+..|-+
T Consensus 1101 ~n~p~vWsqlakAQL~~~~v~dAieSyika-----dDp-----s~y---------~eVi~~a~~~~~~edLv~yL~MaRk 1161 (1666)
T KOG0985|consen 1101 CNEPAVWSQLAKAQLQGGLVKDAIESYIKA-----DDP-----SNY---------LEVIDVASRTGKYEDLVKYLLMARK 1161 (1666)
T ss_pred hCChHHHHHHHHHHHhcCchHHHHHHHHhc-----CCc-----HHH---------HHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 467899999999999999999999999765 333 121 2355666778888888887776655
No 429
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=24.91 E-value=2.1e+02 Score=32.02 Aligned_cols=52 Identities=10% Similarity=0.022 Sum_probs=38.3
Q ss_pred hhHHHHHHcCCcHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhC
Q 026773 177 KKLIRVSHFNRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLEAR 233 (233)
Q Consensus 177 ~rG~al~~lGryeeAi~~f~kAL~lnP~d~e~~~~~~l~~a~Lg~~dEA~~~~l~~~ 233 (233)
..|.+....|+..+|++.|-+| +||..+..---.-.+.|.+++=...++-+|
T Consensus 1109 qlakAQL~~~~v~dAieSyika-----dDps~y~eVi~~a~~~~~~edLv~yL~MaR 1160 (1666)
T KOG0985|consen 1109 QLAKAQLQGGLVKDAIESYIKA-----DDPSNYLEVIDVASRTGKYEDLVKYLLMAR 1160 (1666)
T ss_pred HHHHHHHhcCchHHHHHHHHhc-----CCcHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 6999999999999999999554 566555444444557788888777766554
No 430
>PF07219 HemY_N: HemY protein N-terminus; InterPro: IPR010817 This entry represents the N terminus (approximately 150 residues) of bacterial HemY porphyrin biosynthesis proteins. These are membrane protein involved in a late step of protoheme IX synthesis [].
Probab=24.86 E-value=2.5e+02 Score=21.67 Aligned_cols=34 Identities=26% Similarity=0.373 Sum_probs=28.9
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 026773 123 EAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPR 156 (233)
Q Consensus 123 ~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~ 156 (233)
-+......|+.-+..||++.|.+...++-+..++
T Consensus 58 ka~~al~~Gl~al~~G~~~~A~k~~~~a~~~~~~ 91 (108)
T PF07219_consen 58 KAQRALSRGLIALAEGDWQRAEKLLAKAAKLSDN 91 (108)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence 3566678999999999999999999999777543
No 431
>PF13934 ELYS: Nuclear pore complex assembly
Probab=24.73 E-value=2.7e+02 Score=24.55 Aligned_cols=80 Identities=19% Similarity=0.142 Sum_probs=48.0
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHHHcCCcHHHHHHHHHHHHcCCCCHH
Q 026773 128 IRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSHFNRFEEGAEQFRIDVAQNPNDTE 207 (233)
Q Consensus 128 ~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~lGryeeAi~~f~kAL~lnP~d~e 207 (233)
..+|..+.--+++++|++.+... .+.|.++ . ..-.++...|+...|+..++ +..-....++
T Consensus 82 ~~~g~W~LD~~~~~~A~~~L~~p-s~~~~~~-----~------------~Il~~L~~~~~~~lAL~y~~-~~~p~l~s~~ 142 (226)
T PF13934_consen 82 FIQGFWLLDHGDFEEALELLSHP-SLIPWFP-----D------------KILQALLRRGDPKLALRYLR-AVGPPLSSPE 142 (226)
T ss_pred HHHHHHHhChHhHHHHHHHhCCC-CCCcccH-----H------------HHHHHHHHCCChhHHHHHHH-hcCCCCCCHH
Confidence 57788888888888888888443 3334333 1 13456666788888887775 4444555555
Q ss_pred HHHHHHHHHHHcCCHHHHHH
Q 026773 208 ESIWCFLCEAQLYGVDEARN 227 (233)
Q Consensus 208 ~~~~~~l~~a~Lg~~dEA~~ 227 (233)
........ ...+.+.||-.
T Consensus 143 ~~~~~~~~-La~~~v~EAf~ 161 (226)
T PF13934_consen 143 ALTLYFVA-LANGLVTEAFS 161 (226)
T ss_pred HHHHHHHH-HHcCCHHHHHH
Confidence 43222222 34466777654
No 432
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=24.50 E-value=2e+02 Score=25.53 Aligned_cols=49 Identities=18% Similarity=0.319 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHhh-----CCCCCCCccchhhhhhhhhhhhhhhHHHHHH-cCCcHHHHHHHHHHHH
Q 026773 141 VGSVAEFDKAIEL-----DPRQKISGKGAYRFTISIVGIILKKLIRVSH-FNRFEEGAEQFRIDVA 200 (233)
Q Consensus 141 eeAIadfdkAIeL-----dP~~~~~~~~~y~~~~~~~~a~~~rG~al~~-lGryeeAi~~f~kAL~ 200 (233)
+.|...|++|+++ .|.+| .. .|.++|...-+|. +|+.++|++...+|+.
T Consensus 143 ~~a~~aY~~A~~~a~~~L~~~~p------~r-----Lgl~LN~svF~yei~~~~~~A~~ia~~afd 197 (236)
T PF00244_consen 143 EKALEAYEEALEIAKKELPPTHP------LR-----LGLALNYSVFYYEILNDPEKAIEIAKQAFD 197 (236)
T ss_dssp HHHHHHHHHHHHHHHHHSCTTSH------HH-----HHHHHHHHHHHHHTSS-HHHHHHHHHHHHH
T ss_pred HHHHHhhhhHHHHHhcccCCCCc------HH-----HHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 6788889998874 67666 21 2345566655544 7999999987766654
No 433
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=24.13 E-value=3.1e+02 Score=23.59 Aligned_cols=58 Identities=10% Similarity=0.099 Sum_probs=38.4
Q ss_pred chhHHHhccCcchHHHHHHHHhcccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 026773 94 RAPTFTRRLFIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIEL 153 (233)
Q Consensus 94 ~~~~~~r~~~~~~a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeL 153 (233)
+...+..++-...-..++..+. +.+..+|+.....|.+|-..|+..+|-+...+|-+-
T Consensus 92 ALd~lv~~~kkDqLdki~~~l~--kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACek 149 (161)
T PF09205_consen 92 ALDILVKQGKKDQLDKIYNELK--KNEEINPEFLVKIANAYKKLGNTREANELLKEACEK 149 (161)
T ss_dssp HHHHHHHTT-HHHHHHHHHHH-------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHT
T ss_pred HHHHHHHhccHHHHHHHHHHHh--hccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence 3344455554455566666665 456678999999999999999999999999888764
No 434
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=23.27 E-value=2.1e+02 Score=30.11 Aligned_cols=51 Identities=14% Similarity=-0.008 Sum_probs=26.4
Q ss_pred hHHHHHHcCCcHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhC
Q 026773 178 KLIRVSHFNRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLEAR 233 (233)
Q Consensus 178 rG~al~~lGryeeAi~~f~kAL~lnP~d~e~~~~~~l~~a~Lg~~dEA~~~~l~~~ 233 (233)
|=....++||++.|.+... + .++...|-.++-...+.+++.-|.++|+.+|
T Consensus 643 rFelal~lgrl~iA~~la~---e--~~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~ 693 (794)
T KOG0276|consen 643 RFELALKLGRLDIAFDLAV---E--ANSEVKWRQLGDAALSAGELPLASECFLRAR 693 (794)
T ss_pred hhhhhhhcCcHHHHHHHHH---h--hcchHHHHHHHHHHhhcccchhHHHHHHhhc
Confidence 3344556777777654332 2 2333333333333335667777777776654
No 435
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=23.15 E-value=3.5e+02 Score=27.77 Aligned_cols=65 Identities=8% Similarity=0.146 Sum_probs=46.4
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHHHcCCcHHHHHHHHHHHH
Q 026773 121 SREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSHFNRFEEGAEQFRIDVA 200 (233)
Q Consensus 121 P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~lGryeeAi~~f~kAL~ 200 (233)
...+.....++-.+-..|..|+|-+.|++-++.+|++. .+ ..+..++..|-...|..... +
T Consensus 39 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~-----------~~~~~~~~~~~~~~~~~~~~---~ 99 (578)
T PRK15490 39 ALTSLAMLKKAEFLHDVNETERAYALYETLIAQNNDEA-----RY-----------EYARRLYNTGLAKDAQLILK---K 99 (578)
T ss_pred chhHHHHHHHhhhhhhhhhhHhHHHHHHHHHHhCCcch-----HH-----------HHHHHHHhhhhhhHHHHHHH---H
Confidence 34566677777777888999999999999999999866 22 25666777776666655554 4
Q ss_pred cCCC
Q 026773 201 QNPN 204 (233)
Q Consensus 201 lnP~ 204 (233)
+.|.
T Consensus 100 ~~~~ 103 (578)
T PRK15490 100 VSNG 103 (578)
T ss_pred hCcc
Confidence 5555
No 436
>PF13226 DUF4034: Domain of unknown function (DUF4034)
Probab=23.03 E-value=2.8e+02 Score=25.68 Aligned_cols=41 Identities=27% Similarity=0.311 Sum_probs=33.3
Q ss_pred cCCCCCHHHHHHHHHHHHHc------C----------------CHHHHHHHHHHHHhhCCCCC
Q 026773 118 NNNSREAVVAIRRGMLLFRQ------G----------------DVVGSVAEFDKAIELDPRQK 158 (233)
Q Consensus 118 ~l~P~~a~Ay~~RG~a~~~l------G----------------dyeeAIadfdkAIeLdP~~~ 158 (233)
+-.|++.-+|..+|+.+... + -.+.|+.++-|||+++|+..
T Consensus 71 ~a~P~Sy~A~La~g~~~~~~Aw~~RG~~~A~~V~~~~W~~~~~~~d~A~~~ll~A~~l~pr~~ 133 (277)
T PF13226_consen 71 AACPKSYHAHLAMGMYWVHRAWDIRGSGYASTVTEAQWLGAHQACDQAVAALLKAIELSPRPV 133 (277)
T ss_pred HHCCCChHHHHHHHHHHHHHHHHHHccchhcccCHHHHHHHHHHHHHHHHHHHHHHhcCCCch
Confidence 45599999999999887643 1 24579999999999999987
No 437
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=23.02 E-value=7e+02 Score=24.22 Aligned_cols=103 Identities=12% Similarity=-0.035 Sum_probs=0.0
Q ss_pred CCCCHHHHHHHHH--HHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHHHcCCcHHHHHHHHH
Q 026773 120 NSREAVVAIRRGM--LLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSHFNRFEEGAEQFRI 197 (233)
Q Consensus 120 ~P~~a~Ay~~RG~--a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~lGryeeAi~~f~k 197 (233)
||........... .++..+||..|.+.|+.+.+-.+.... .-.+. ....+-+|..+-..-++++|.+.+++
T Consensus 124 nP~~v~~~~e~~~~r~l~n~~dy~aA~~~~~~L~~r~l~~~~----~~~~~---~~~~l~~~y~~WD~fd~~~A~~~L~~ 196 (380)
T TIGR02710 124 DPYNVEGNTEQGYARRAINAFDYLFAHARLETLLRRLLSAVN----HTFYE---AMIKLTRAYLHWDRFEHEEALDYLND 196 (380)
T ss_pred CHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHhcccChhh----hhHHH---HHHHHHHHHHHHHccCHHHHHHHHhh
Q ss_pred HH-----------------------HcCCC------------------CHHHHHHHHHHHHHcCCHHHHHHHH
Q 026773 198 DV-----------------------AQNPN------------------DTEESIWCFLCEAQLYGVDEARNRF 229 (233)
Q Consensus 198 AL-----------------------~lnP~------------------d~e~~~~~~l~~a~Lg~~dEA~~~~ 229 (233)
.+ .+-|. -....+.++.-.+..|+++.|..++
T Consensus 197 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~na~rr~~~~ry~da~~r~ 269 (380)
T TIGR02710 197 PLPERLALYQVTSHDELEDVIKRNASILPEIIGSRNGRREAKRRPFLPLLGDLLANAERRATQGRYDDAAARL 269 (380)
T ss_pred ccchhhhhhhhhhhhHHHHHHHhHHhhcchhhhccchhhhhcccchHHHHHHHHHHHHHHHHccCHHHHHHHH
No 438
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=22.64 E-value=3.4e+02 Score=27.92 Aligned_cols=108 Identities=16% Similarity=0.089 Sum_probs=63.6
Q ss_pred cchHHHHHHHHhcccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHH
Q 026773 104 IPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVS 183 (233)
Q Consensus 104 ~~~a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~ 183 (233)
.|+....|+... .+.-+.++|..+=.---...+.+.+-..|+..+.--|--. -+|. ..+..-+
T Consensus 28 ~p~~~~~we~~~---~~~~~f~~wt~li~~~~~~~~~~~~r~~y~~fL~kyPl~~------gyW~--------kfA~~E~ 90 (577)
T KOG1258|consen 28 YPDSLDYWEILS---NDSLDFDAWTTLIQENDSIEDVDALREVYDIFLSKYPLCY------GYWK--------KFADYEY 90 (577)
T ss_pred CcchhhHhhccc---cchhcccchHHHHhccCchhHHHHHHHHHHHHHhhCccHH------HHHH--------HHHHHHH
Confidence 366666776543 4445555553321111122233556666777777777554 2344 5788888
Q ss_pred HcCCcHHHHHHHHHHHHcCCCCHHHHHHHHHH---HHHcCCHHHHHHHHH
Q 026773 184 HFNRFEEGAEQFRIDVAQNPNDTEESIWCFLC---EAQLYGVDEARNRFL 230 (233)
Q Consensus 184 ~lGryeeAi~~f~kAL~lnP~d~e~~~~~~l~---~a~Lg~~dEA~~~~l 230 (233)
.+|.-+.+++.|++++.-=|-..+ +|...| ...-|+.+.=++.|+
T Consensus 91 klg~~~~s~~Vfergv~aip~Svd--lW~~Y~~f~~n~~~d~~~lr~~fe 138 (577)
T KOG1258|consen 91 KLGNAENSVKVFERGVQAIPLSVD--LWLSYLAFLKNNNGDPETLRDLFE 138 (577)
T ss_pred HhhhHHHHHHHHHHHHHhhhhHHH--HHHHHHHHHhccCCCHHHHHHHHH
Confidence 889999999999999888885444 555433 224455555444444
No 439
>PF08626 TRAPPC9-Trs120: Transport protein Trs120 or TRAPPC9, TRAPP II complex subunit; InterPro: IPR013935 The trafficking protein particle complex TRAPP is a multi-protein complex needed in the early stages of the secretory pathway. To date, two kinds of TRAPP complexes have been studied, TRAPPI and TRAPP II. These complexes differ in subunit composition []. TRAPP I binds vesicles derived from the endoplasmic reticulum bringing them closer to the acceptor membrane. Trs120 is a subunit specific to the TRAPP II complex [] along with Trs65p and Trs130p(TRAPPC10). It is suggested that Trs120p is required for the stability of the Trs130p subunit, suggesting that these two proteins might interact in some way []. It is likely that there is a complex function for TRAPP II in multiple pathways [].
Probab=21.89 E-value=96 Score=33.96 Aligned_cols=41 Identities=20% Similarity=0.272 Sum_probs=35.2
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhh
Q 026773 123 EAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFT 168 (233)
Q Consensus 123 ~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~ 168 (233)
.......+|..+...|++.+|++.|..|+++--... .+.|.
T Consensus 241 ~gR~~k~~gd~~LlaG~~~dAl~~y~~a~~~~k~~~-----D~lW~ 281 (1185)
T PF08626_consen 241 KGRLQKVLGDLYLLAGRWPDALKEYTEAIEILKSSN-----DYLWL 281 (1185)
T ss_pred hhhhhhhhhhHHHHcCCHHHHHHHHHHHHHHHhhcC-----cHhhh
Confidence 356678899999999999999999999999976666 57786
No 440
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.86 E-value=4.5e+02 Score=23.64 Aligned_cols=71 Identities=8% Similarity=0.017 Sum_probs=49.6
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHHHcCCcHHHHHHHHHHH
Q 026773 120 NSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSHFNRFEEGAEQFRIDV 199 (233)
Q Consensus 120 ~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~lGryeeAi~~f~kAL 199 (233)
..++.+++ .-+.-+.+-|+.++|++.|...-.-+-... +.. +.+..|.++..-|+-.+|+..|+.+-
T Consensus 55 as~sgd~f-laAL~lA~~~k~d~Alaaf~~lektg~g~Y-----pvL-------A~mr~at~~a~kgdta~AV~aFdeia 121 (221)
T COG4649 55 ASKSGDAF-LAALKLAQENKTDDALAAFTDLEKTGYGSY-----PVL-------ARMRAATLLAQKGDTAAAVAAFDEIA 121 (221)
T ss_pred cccchHHH-HHHHHHHHcCCchHHHHHHHHHHhcCCCcc-----hHH-------HHHHHHHHHhhcccHHHHHHHHHHHh
Confidence 34455554 445666788999999999987655444333 222 34568999999999999999999865
Q ss_pred HcCC
Q 026773 200 AQNP 203 (233)
Q Consensus 200 ~lnP 203 (233)
+-.|
T Consensus 122 ~dt~ 125 (221)
T COG4649 122 ADTS 125 (221)
T ss_pred ccCC
Confidence 5443
No 441
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=21.25 E-value=6.5e+02 Score=25.88 Aligned_cols=105 Identities=16% Similarity=0.118 Sum_probs=0.0
Q ss_pred HHHHHhcccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHHHcCCcH
Q 026773 110 IWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSHFNRFE 189 (233)
Q Consensus 110 i~~~~i~~~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~lGrye 189 (233)
++++++ .--|-.+++|+.-.+...-.+|-+.|+.-..++++..| ..... ....+-..+|-+
T Consensus 290 ~~~q~~--~y~~~~~evw~dys~Y~~~isd~q~al~tv~rg~~~sp--------sL~~~---------lse~yel~nd~e 350 (660)
T COG5107 290 IHNQIL--DYFYYAEEVWFDYSEYLIGISDKQKALKTVERGIEMSP--------SLTMF---------LSEYYELVNDEE 350 (660)
T ss_pred HHHHHH--HHhhhhHHHHHHHHHHHhhccHHHHHHHHHHhcccCCC--------chhee---------HHHHHhhcccHH
Q ss_pred HHHHHHHHHHHc------------------CCCCHHHHHHHHHH------------HHHcCCHHHHHHHHHhhC
Q 026773 190 EGAEQFRIDVAQ------------------NPNDTEESIWCFLC------------EAQLYGVDEARNRFLEAR 233 (233)
Q Consensus 190 eAi~~f~kAL~l------------------nP~d~e~~~~~~l~------------~a~Lg~~dEA~~~~l~~~ 233 (233)
+--.+|+++++- ||.....+.....- ..+..+.+.|+..|.+.|
T Consensus 351 ~v~~~fdk~~q~L~r~ys~~~s~~~s~~D~N~e~~~Ell~kr~~k~t~v~C~~~N~v~r~~Gl~aaR~~F~k~r 424 (660)
T COG5107 351 AVYGCFDKCTQDLKRKYSMGESESASKVDNNFEYSKELLLKRINKLTFVFCVHLNYVLRKRGLEAARKLFIKLR 424 (660)
T ss_pred HHhhhHHHHHHHHHHHHhhhhhhhhccccCCccccHHHHHHHHhhhhhHHHHHHHHHHHHhhHHHHHHHHHHHh
No 442
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=21.06 E-value=8.6e+02 Score=26.47 Aligned_cols=104 Identities=13% Similarity=0.010 Sum_probs=72.3
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC--CCCCccchhhhhhhhhhhhhhhHHHHHHcCCcHHHHHHHHHHH
Q 026773 122 REAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPR--QKISGKGAYRFTISIVGIILKKLIRVSHFNRFEEGAEQFRIDV 199 (233)
Q Consensus 122 ~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~--~~~~~~~~y~~~~~~~~a~~~rG~al~~lGryeeAi~~f~kAL 199 (233)
++|.--...++....+.++.+|-...+++-.--|. ....|+--.-|+ .-+|.+....|+.++|++..+.++
T Consensus 413 ~~P~Lvll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~-------aL~a~val~~~~~e~a~~lar~al 485 (894)
T COG2909 413 STPRLVLLQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQ-------ALRAQVALNRGDPEEAEDLARLAL 485 (894)
T ss_pred hCchHHHHHHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHH-------HHHHHHHHhcCCHHHHHHHHHHHH
Confidence 45666667788889999999999888888776554 211122222333 358999999999999999999999
Q ss_pred HcCCCCHHHH---H--HHHHHHHHcCCHHHHHHHHHhh
Q 026773 200 AQNPNDTEES---I--WCFLCEAQLYGVDEARNRFLEA 232 (233)
Q Consensus 200 ~lnP~d~e~~---~--~~~l~~a~Lg~~dEA~~~~l~~ 232 (233)
..=|.+.... . ..+-+..-+|++++|+.....+
T Consensus 486 ~~L~~~~~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a 523 (894)
T COG2909 486 VQLPEAAYRSRIVALSVLGEAAHIRGELTQALALMQQA 523 (894)
T ss_pred HhcccccchhhhhhhhhhhHHHHHhchHHHHHHHHHHH
Confidence 9888765321 1 1123334578999998876543
No 443
>COG5091 SGT1 Suppressor of G2 allele of skp1 and related proteins [General function prediction only]
Probab=20.78 E-value=2.3e+02 Score=26.97 Aligned_cols=73 Identities=15% Similarity=0.139 Sum_probs=50.8
Q ss_pred CCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHHHcCCcHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Q 026773 138 GDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSHFNRFEEGAEQFRIDVAQNPNDTEESIWCFLCEA 217 (233)
Q Consensus 138 GdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~lGryeeAi~~f~kAL~lnP~d~e~~~~~~l~~a 217 (233)
-..+.|.+..++|+-+.-.-..+|+-.+... .+|+.++.+.+|+-|..+|.+|..+=-++.- -.|.-....
T Consensus 53 ~~~~n~~e~~d~ALm~Ae~r~D~~~IG~~~~--------~~~v~~~~ik~Ye~a~~~F~~A~~~~~~d~L-~~We~rLet 123 (368)
T COG5091 53 ATMENAKELLDKALMTAEGRGDRSKIGLVNF--------RYFVHFFNIKDYELAQSYFKKAKNLYVDDTL-PLWEDRLET 123 (368)
T ss_pred cChhhHHHHHHHHHHhhhccCCcceeeeehh--------hhHHHhhhHHHHHHHHHHHHHHHHHhhcccc-hHHHHHHHH
Confidence 3567788999999988766554444444332 5899999999999999999999987444332 255544444
Q ss_pred Hc
Q 026773 218 QL 219 (233)
Q Consensus 218 ~L 219 (233)
++
T Consensus 124 ~L 125 (368)
T COG5091 124 KL 125 (368)
T ss_pred HH
Confidence 33
No 444
>cd08977 SusD starch binding outer membrane protein SusD. SusD-like proteins from Bacteroidetes, members of the human distal gut microbiota, are part of the starch utilization system (Sus). Sus is one of the large clusters of glycosyl hydrolases, called polysaccharide utilization loci (PULs), which play an important role in polysaccharide recognition and uptake, and it is needed for growth on amylose, amylopectin, pullulan, and maltooligosaccharides. SusD, together with SusC, a predicted beta-barrel porin, forms the minimum outer-membrane starch-binding complex. The adult human distal gut microbiota is essential for digestion of a large variety of dietary polysaccharides, for which humans lack the necessary glycosyl hydrolases.
Probab=20.75 E-value=2.6e+02 Score=25.49 Aligned_cols=59 Identities=12% Similarity=-0.029 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHhhCCCCCCC------ccchhhhhhhhhhhhhhhHHHHHHcC-----CcHHHHHHHHHHHHc
Q 026773 140 VVGSVAEFDKAIELDPRQKIS------GKGAYRFTISIVGIILKKLIRVSHFN-----RFEEGAEQFRIDVAQ 201 (233)
Q Consensus 140 yeeAIadfdkAIeLdP~~~~~------~~~~y~~~~~~~~a~~~rG~al~~lG-----ryeeAi~~f~kAL~l 201 (233)
|+..++|+++|++.=|..... +..... ...-|..-++.++...+ ++++|++..++++.-
T Consensus 141 y~~i~~dL~~A~~~L~~~~~~~~~~~~~~~~r~---~k~aA~al~ar~~L~~~~~~~~~~~~A~~~~~~vi~~ 210 (359)
T cd08977 141 YTQILADLDEAIALLPEASSAQDFYIYFGDGRA---WKKAARALLARVYLYLANYTAADYAEALTAAEKSFKG 210 (359)
T ss_pred HHHHHHHHHHHHHhccccccccccccccCcchh---hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhc
Confidence 556788999999875543210 000111 22345556788888888 899999999999874
No 445
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=20.56 E-value=2.7e+02 Score=24.80 Aligned_cols=48 Identities=10% Similarity=-0.097 Sum_probs=35.4
Q ss_pred hHHH-HHHcCCcHHHHHHHHHHHHcCCCC----HHHHHHHHHHHHHcCCHHHH
Q 026773 178 KLIR-VSHFNRFEEGAEQFRIDVAQNPND----TEESIWCFLCEAQLYGVDEA 225 (233)
Q Consensus 178 rG~a-l~~lGryeeAi~~f~kAL~lnP~d----~e~~~~~~l~~a~Lg~~dEA 225 (233)
.+++ +|...+.+.|+..+.+++++.+.+ ++...-++-...++|+++.|
T Consensus 145 ~aLAtyY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 145 YALATYYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 4444 344678899999999999987654 66555566667788988877
No 446
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=20.50 E-value=4.2e+02 Score=25.16 Aligned_cols=55 Identities=11% Similarity=0.116 Sum_probs=41.1
Q ss_pred hhhHHHHHHcCCcHHHHHHHHHHHHc-CCCCHHHHHHHHHHHH----HcCCHHHHHHHHHh
Q 026773 176 LKKLIRVSHFNRFEEGAEQFRIDVAQ-NPNDTEESIWCFLCEA----QLYGVDEARNRFLE 231 (233)
Q Consensus 176 ~~rG~al~~lGryeeAi~~f~kAL~l-nP~d~e~~~~~~l~~a----~Lg~~dEA~~~~l~ 231 (233)
..+...++..++|.+|.+.++...+. .++.. ...+..+|.+ -..++++|.+.+..
T Consensus 135 ~~~a~~l~n~~~y~aA~~~l~~l~~rl~~~~~-~~~~~~l~~~y~~WD~fd~~~A~~~l~~ 194 (379)
T PF09670_consen 135 WRRAKELFNRYDYGAAARILEELLRRLPGREE-YQRYKDLCEGYDAWDRFDHKEALEYLEK 194 (379)
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHhCCchhh-HHHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 45788899999999999999999884 44433 3344555654 46789999988875
No 447
>PF08626 TRAPPC9-Trs120: Transport protein Trs120 or TRAPPC9, TRAPP II complex subunit; InterPro: IPR013935 The trafficking protein particle complex TRAPP is a multi-protein complex needed in the early stages of the secretory pathway. To date, two kinds of TRAPP complexes have been studied, TRAPPI and TRAPP II. These complexes differ in subunit composition []. TRAPP I binds vesicles derived from the endoplasmic reticulum bringing them closer to the acceptor membrane. Trs120 is a subunit specific to the TRAPP II complex [] along with Trs65p and Trs130p(TRAPPC10). It is suggested that Trs120p is required for the stability of the Trs130p subunit, suggesting that these two proteins might interact in some way []. It is likely that there is a complex function for TRAPP II in multiple pathways [].
Probab=20.48 E-value=92 Score=34.12 Aligned_cols=41 Identities=5% Similarity=-0.010 Sum_probs=30.3
Q ss_pred hhhhHHHHHHcCCcHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Q 026773 175 ILKKLIRVSHFNRFEEGAEQFRIDVAQNPNDTEESIWCFLCE 216 (233)
Q Consensus 175 ~~~rG~al~~lGryeeAi~~f~kAL~lnP~d~e~~~~~~l~~ 216 (233)
---.|..+...|++.+|++.|..|+++--...+ ++|.+.|+
T Consensus 245 ~k~~gd~~LlaG~~~dAl~~y~~a~~~~k~~~D-~lW~a~al 285 (1185)
T PF08626_consen 245 QKVLGDLYLLAGRWPDALKEYTEAIEILKSSND-YLWLASAL 285 (1185)
T ss_pred hhhhhhHHHHcCCHHHHHHHHHHHHHHHhhcCc-HhhhHHHH
Confidence 334899999999999999999999986432222 47776443
Done!