Query 026773
Match_columns 233
No_of_seqs 198 out of 1128
Neff 4.9
Searched_HMMs 29240
Date Mon Mar 25 21:48:17 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026773.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/026773hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4gco_A Protein STI-1; structur 99.8 1.8E-19 6.1E-24 138.9 11.5 101 118-232 7-107 (126)
2 3gyz_A Chaperone protein IPGC; 99.8 3.5E-19 1.2E-23 143.6 10.2 101 118-232 30-130 (151)
3 4gco_A Protein STI-1; structur 99.7 1.5E-17 5.2E-22 128.0 11.5 104 96-215 21-124 (126)
4 2vgx_A Chaperone SYCD; alterna 99.7 2.4E-17 8.1E-22 129.9 12.0 108 109-232 8-115 (148)
5 2pl2_A Hypothetical conserved 99.7 4.5E-17 1.5E-21 134.4 14.0 121 96-232 13-144 (217)
6 3vtx_A MAMA; tetratricopeptide 99.7 1.1E-16 3.7E-21 125.7 15.1 130 96-232 13-167 (184)
7 2xcb_A PCRH, regulatory protei 99.7 2E-17 6.7E-22 127.5 10.4 107 110-232 6-112 (142)
8 3upv_A Heat shock protein STI1 99.7 1E-16 3.5E-21 119.6 12.0 87 100-202 16-102 (126)
9 4ga2_A E3 SUMO-protein ligase 99.7 3.4E-17 1.2E-21 128.8 8.8 109 105-229 14-122 (150)
10 2h6f_A Protein farnesyltransfe 99.7 1E-16 3.4E-21 146.9 11.8 121 96-232 105-226 (382)
11 4gyw_A UDP-N-acetylglucosamine 99.7 2.4E-16 8.1E-21 156.1 14.6 120 96-231 17-136 (723)
12 2pl2_A Hypothetical conserved 99.7 3.3E-16 1.1E-20 129.2 12.8 119 96-231 47-176 (217)
13 3q49_B STIP1 homology and U bo 99.7 1.4E-15 4.8E-20 113.3 13.5 101 118-232 3-103 (137)
14 4gcn_A Protein STI-1; structur 99.7 2.3E-16 7.8E-21 121.1 9.1 98 121-232 5-109 (127)
15 3urz_A Uncharacterized protein 99.7 5.4E-16 1.8E-20 127.1 11.6 104 97-216 13-132 (208)
16 3sz7_A HSC70 cochaperone (SGT) 99.7 1.2E-15 4.2E-20 119.2 12.3 108 95-218 18-125 (164)
17 4gyw_A UDP-N-acetylglucosamine 99.6 4.7E-16 1.6E-20 153.9 12.2 122 95-232 50-171 (723)
18 4i17_A Hypothetical protein; T 99.6 2E-15 6.7E-20 122.7 13.8 121 96-232 15-143 (228)
19 2kck_A TPR repeat; tetratricop 99.6 7.1E-16 2.4E-20 109.2 9.3 100 119-232 1-103 (112)
20 4ga2_A E3 SUMO-protein ligase 99.6 1.3E-15 4.3E-20 119.8 11.5 109 97-221 40-149 (150)
21 2h6f_A Protein farnesyltransfe 99.6 4E-16 1.4E-20 142.9 9.5 114 97-226 140-255 (382)
22 3upv_A Heat shock protein STI1 99.6 1.9E-15 6.4E-20 112.7 11.3 98 121-232 1-98 (126)
23 1a17_A Serine/threonine protei 99.6 4.1E-15 1.4E-19 112.9 12.5 121 96-232 21-143 (166)
24 3gyz_A Chaperone protein IPGC; 99.6 1.7E-15 5.9E-20 121.9 10.6 120 67-206 19-138 (151)
25 2hr2_A Hypothetical protein; a 99.6 1.9E-15 6.5E-20 125.8 11.2 108 123-232 10-128 (159)
26 2e2e_A Formate-dependent nitri 99.6 4.1E-15 1.4E-19 116.6 12.0 116 101-232 23-141 (177)
27 2xcb_A PCRH, regulatory protei 99.6 2E-15 7E-20 116.1 10.1 109 96-220 26-134 (142)
28 3sz7_A HSC70 cochaperone (SGT) 99.6 2.6E-15 8.8E-20 117.3 10.6 101 118-232 5-105 (164)
29 4i17_A Hypothetical protein; T 99.6 4.2E-15 1.4E-19 120.7 11.5 118 96-222 50-169 (228)
30 2vgx_A Chaperone SYCD; alterna 99.6 3.1E-15 1.1E-19 117.7 10.3 105 96-216 29-133 (148)
31 4gcn_A Protein STI-1; structur 99.6 5.3E-15 1.8E-19 113.4 9.4 101 97-207 17-117 (127)
32 1hxi_A PEX5, peroxisome target 99.6 9.6E-15 3.3E-19 111.3 10.7 90 100-205 29-118 (121)
33 3uq3_A Heat shock protein STI1 99.6 1.8E-14 6.2E-19 115.7 12.5 113 104-232 121-233 (258)
34 3qky_A Outer membrane assembly 99.6 3.3E-14 1.1E-18 118.2 14.4 124 96-232 23-174 (261)
35 2fo7_A Synthetic consensus TPR 99.6 6.7E-14 2.3E-18 100.5 14.0 119 98-232 11-129 (136)
36 2lni_A Stress-induced-phosphop 99.6 2.4E-14 8.3E-19 104.5 11.8 110 96-221 24-133 (133)
37 2pzi_A Probable serine/threoni 99.6 7E-15 2.4E-19 142.5 11.4 116 100-232 445-560 (681)
38 3rkv_A Putative peptidylprolyl 99.6 2.4E-15 8.3E-20 117.3 6.7 107 96-218 19-144 (162)
39 1hh8_A P67PHOX, NCF-2, neutrop 99.6 4.3E-14 1.5E-18 112.6 14.1 117 97-232 15-147 (213)
40 3as5_A MAMA; tetratricopeptide 99.6 7.1E-14 2.4E-18 106.2 14.6 120 97-232 51-170 (186)
41 2vyi_A SGTA protein; chaperone 99.6 3.4E-14 1.2E-18 102.5 12.1 110 97-222 21-130 (131)
42 2lni_A Stress-induced-phosphop 99.6 2.4E-14 8.1E-19 104.5 11.4 101 118-232 10-110 (133)
43 3u4t_A TPR repeat-containing p 99.6 4.6E-14 1.6E-18 115.5 14.1 124 96-232 11-134 (272)
44 1p5q_A FKBP52, FK506-binding p 99.6 2.2E-14 7.6E-19 127.1 12.6 115 97-227 156-285 (336)
45 3k9i_A BH0479 protein; putativ 99.6 7.1E-15 2.4E-19 109.6 7.9 103 104-222 6-111 (117)
46 3rkv_A Putative peptidylprolyl 99.6 1.9E-14 6.6E-19 112.1 10.6 107 122-232 9-123 (162)
47 1xnf_A Lipoprotein NLPI; TPR, 99.6 2.9E-14 9.8E-19 116.3 11.9 114 101-231 56-169 (275)
48 3as5_A MAMA; tetratricopeptide 99.6 8.9E-14 3E-18 105.6 13.8 120 97-232 17-136 (186)
49 2q7f_A YRRB protein; TPR, prot 99.6 5.6E-14 1.9E-18 112.5 13.3 100 118-231 85-184 (243)
50 4eqf_A PEX5-related protein; a 99.5 3.5E-14 1.2E-18 122.1 12.3 119 98-232 187-307 (365)
51 2l6j_A TPR repeat-containing p 99.5 3.3E-15 1.1E-19 107.2 5.0 94 123-230 3-102 (111)
52 2dba_A Smooth muscle cell asso 99.5 6.4E-14 2.2E-18 104.3 12.0 101 96-212 36-139 (148)
53 1elw_A TPR1-domain of HOP; HOP 99.5 9.4E-14 3.2E-18 98.7 12.4 100 97-212 13-112 (118)
54 2hr2_A Hypothetical protein; a 99.5 2.7E-15 9.1E-20 125.0 4.9 100 96-207 19-137 (159)
55 2vyi_A SGTA protein; chaperone 99.5 4.9E-14 1.7E-18 101.6 10.8 101 118-232 6-106 (131)
56 1xnf_A Lipoprotein NLPI; TPR, 99.5 1.2E-13 4.1E-18 112.6 14.4 113 104-232 21-137 (275)
57 1hxi_A PEX5, peroxisome target 99.5 1.7E-14 5.7E-19 110.0 8.3 91 125-232 18-111 (121)
58 1p5q_A FKBP52, FK506-binding p 99.5 7.2E-15 2.5E-19 130.2 7.1 126 105-232 130-256 (336)
59 1na0_A Designed protein CTPR3; 99.5 1.9E-13 6.5E-18 97.7 13.2 106 97-218 18-123 (125)
60 3vtx_A MAMA; tetratricopeptide 99.5 1.2E-13 3.9E-18 108.3 12.9 106 122-232 3-133 (184)
61 2q7f_A YRRB protein; TPR, prot 99.5 1.8E-13 6.3E-18 109.5 14.0 121 96-232 99-219 (243)
62 1w3b_A UDP-N-acetylglucosamine 99.5 1.3E-13 4.4E-18 119.8 13.7 110 106-231 255-364 (388)
63 1w3b_A UDP-N-acetylglucosamine 99.5 1.2E-13 4.1E-18 120.0 13.4 123 102-231 81-228 (388)
64 2fbn_A 70 kDa peptidylprolyl i 99.5 6.1E-14 2.1E-18 112.6 10.7 117 94-226 44-176 (198)
65 2xev_A YBGF; tetratricopeptide 99.5 1.6E-13 5.5E-18 101.1 12.1 102 96-210 10-114 (129)
66 3hym_B Cell division cycle pro 99.5 4.1E-13 1.4E-17 111.6 15.5 120 97-232 99-219 (330)
67 1zu2_A Mitochondrial import re 99.5 1.9E-14 6.7E-19 119.7 7.4 96 97-208 11-127 (158)
68 2ho1_A Type 4 fimbrial biogene 99.5 2.3E-13 7.8E-18 110.5 13.5 128 97-231 46-200 (252)
69 1fch_A Peroxisomal targeting s 99.5 2E-13 6.9E-18 116.1 13.8 117 100-232 193-311 (368)
70 2vq2_A PILW, putative fimbrial 99.5 3.7E-13 1.3E-17 105.8 14.0 119 100-232 54-173 (225)
71 3q49_B STIP1 homology and U bo 99.5 7.2E-14 2.5E-18 104.0 9.4 108 96-219 17-129 (137)
72 2vsy_A XCC0866; transferase, g 99.5 2.9E-13 1E-17 125.9 15.6 121 96-232 31-154 (568)
73 2vsy_A XCC0866; transferase, g 99.5 1.2E-13 4.2E-18 128.5 12.8 112 105-232 6-117 (568)
74 1kt0_A FKBP51, 51 kDa FK506-bi 99.5 6.2E-14 2.1E-18 129.5 10.7 118 96-229 276-408 (457)
75 3hym_B Cell division cycle pro 99.5 4.6E-13 1.6E-17 111.2 14.9 128 98-232 169-296 (330)
76 2c2l_A CHIP, carboxy terminus 99.5 1.9E-13 6.5E-18 117.8 12.9 97 121-231 1-97 (281)
77 4eqf_A PEX5-related protein; a 99.5 1.9E-13 6.6E-18 117.4 12.7 130 96-232 107-273 (365)
78 1elw_A TPR1-domain of HOP; HOP 99.5 3.9E-13 1.3E-17 95.4 12.2 97 122-232 2-98 (118)
79 1a17_A Serine/threonine protei 99.5 4.5E-13 1.5E-17 101.5 13.0 96 123-232 12-107 (166)
80 3urz_A Uncharacterized protein 99.5 1.3E-13 4.5E-18 112.9 10.7 107 122-232 2-114 (208)
81 2dba_A Smooth muscle cell asso 99.5 3.4E-13 1.2E-17 100.4 12.0 104 118-232 22-125 (148)
82 1kt0_A FKBP51, 51 kDa FK506-bi 99.5 2.5E-14 8.4E-19 132.2 6.7 126 105-232 251-377 (457)
83 3cv0_A Peroxisome targeting si 99.5 5.3E-13 1.8E-17 110.8 14.1 114 103-232 153-266 (327)
84 1na0_A Designed protein CTPR3; 99.5 7.1E-13 2.4E-17 94.7 12.9 101 118-232 2-103 (125)
85 1elr_A TPR2A-domain of HOP; HO 99.5 1.8E-13 6.3E-18 98.9 9.6 98 121-232 1-105 (131)
86 1fch_A Peroxisomal targeting s 99.5 2.3E-13 8E-18 115.7 11.8 121 95-231 224-355 (368)
87 4abn_A Tetratricopeptide repea 99.5 1E-13 3.4E-18 128.3 10.2 119 97-232 111-247 (474)
88 2vq2_A PILW, putative fimbrial 99.5 6.2E-13 2.1E-17 104.5 13.2 122 96-231 84-207 (225)
89 3cv0_A Peroxisome targeting si 99.5 4.1E-13 1.4E-17 111.4 12.7 119 98-232 182-312 (327)
90 1wao_1 Serine/threonine protei 99.5 5.8E-14 2E-18 131.1 8.1 117 98-230 16-134 (477)
91 2ho1_A Type 4 fimbrial biogene 99.5 7.7E-13 2.6E-17 107.4 13.6 121 96-232 113-235 (252)
92 3ieg_A DNAJ homolog subfamily 99.5 5.8E-13 2E-17 111.3 13.0 121 96-232 11-146 (359)
93 3uq3_A Heat shock protein STI1 99.5 2.7E-13 9.2E-18 108.8 10.6 130 96-232 46-199 (258)
94 2r5s_A Uncharacterized protein 99.5 9.3E-14 3.2E-18 110.2 7.6 129 96-232 14-170 (176)
95 2fbn_A 70 kDa peptidylprolyl i 99.5 8.2E-14 2.8E-18 111.9 7.3 120 105-232 21-148 (198)
96 1na3_A Designed protein CTPR2; 99.5 4.5E-13 1.5E-17 93.0 10.0 88 119-220 3-91 (91)
97 2xev_A YBGF; tetratricopeptide 99.5 1.2E-12 4E-17 96.4 12.3 98 124-232 2-102 (129)
98 3qou_A Protein YBBN; thioredox 99.4 2.3E-13 8E-18 117.3 9.8 129 96-231 125-280 (287)
99 3fp2_A TPR repeat-containing p 99.4 1.3E-12 4.4E-17 116.7 14.7 117 100-232 288-404 (537)
100 4abn_A Tetratricopeptide repea 99.4 3E-13 1E-17 125.1 10.8 120 96-232 145-284 (474)
101 2yhc_A BAMD, UPF0169 lipoprote 99.4 9.7E-13 3.3E-17 108.4 12.7 124 96-232 12-173 (225)
102 3u4t_A TPR repeat-containing p 99.4 2.8E-13 9.5E-18 110.9 9.4 121 96-232 82-205 (272)
103 3qky_A Outer membrane assembly 99.4 6.8E-13 2.3E-17 110.3 11.7 129 96-232 60-221 (261)
104 2kat_A Uncharacterized protein 99.4 8.3E-13 2.8E-17 97.3 10.6 85 106-206 3-87 (115)
105 3ieg_A DNAJ homolog subfamily 99.4 2.7E-12 9.2E-17 107.2 14.6 121 96-232 128-260 (359)
106 2yhc_A BAMD, UPF0169 lipoprote 99.4 1.6E-12 5.5E-17 107.1 12.7 129 96-232 49-210 (225)
107 3ma5_A Tetratricopeptide repea 99.4 3.6E-13 1.2E-17 98.8 7.7 75 119-207 2-76 (100)
108 1ihg_A Cyclophilin 40; ppiase 99.4 4E-13 1.4E-17 121.8 9.6 117 96-228 231-363 (370)
109 3dra_A Protein farnesyltransfe 99.4 2.6E-12 9E-17 115.5 14.9 147 69-231 10-171 (306)
110 2y4t_A DNAJ homolog subfamily 99.4 2.3E-12 7.7E-17 112.9 13.9 121 96-232 34-169 (450)
111 2y4t_A DNAJ homolog subfamily 99.4 1.1E-12 3.9E-17 114.8 12.0 112 105-232 9-120 (450)
112 2pzi_A Probable serine/threoni 99.4 3.1E-13 1.1E-17 130.9 9.2 114 104-232 407-526 (681)
113 2xpi_A Anaphase-promoting comp 99.4 4.8E-12 1.7E-16 115.1 15.1 121 96-232 381-501 (597)
114 2ond_A Cleavage stimulation fa 99.4 1.7E-12 6E-17 111.7 11.4 112 105-232 33-160 (308)
115 2c2l_A CHIP, carboxy terminus 99.4 3E-13 1E-17 116.5 6.5 94 96-205 12-105 (281)
116 3fp2_A TPR repeat-containing p 99.4 1.7E-12 5.7E-17 116.0 11.4 130 96-232 318-488 (537)
117 2xpi_A Anaphase-promoting comp 99.4 5.5E-12 1.9E-16 114.8 14.6 125 99-232 452-576 (597)
118 2kck_A TPR repeat; tetratricop 99.4 2.8E-12 9.6E-17 90.5 9.8 95 96-206 14-111 (112)
119 1qqe_A Vesicular transport pro 99.4 2E-12 6.8E-17 111.0 10.8 129 94-232 83-225 (292)
120 1elr_A TPR2A-domain of HOP; HO 99.4 1.7E-12 5.9E-17 93.7 8.8 113 97-219 13-125 (131)
121 2gw1_A Mitochondrial precursor 99.4 5.9E-12 2E-16 111.2 13.2 120 97-232 279-398 (514)
122 1dce_A Protein (RAB geranylger 99.4 4.9E-12 1.7E-16 121.6 13.6 114 103-232 44-170 (567)
123 2ond_A Cleavage stimulation fa 99.4 8.1E-12 2.8E-16 107.5 13.5 118 99-232 110-229 (308)
124 3k9i_A BH0479 protein; putativ 99.4 3.7E-13 1.3E-17 100.2 4.4 83 136-232 2-87 (117)
125 2gw1_A Mitochondrial precursor 99.3 5.1E-12 1.7E-16 111.6 11.9 116 107-232 357-475 (514)
126 1qqe_A Vesicular transport pro 99.3 2.2E-12 7.6E-17 110.7 9.2 129 96-232 45-184 (292)
127 2if4_A ATFKBP42; FKBP-like, al 99.3 5.2E-13 1.8E-17 118.6 5.2 119 97-231 188-324 (338)
128 2fo7_A Synthetic consensus TPR 99.3 1.2E-11 4E-16 88.7 11.4 94 125-232 2-95 (136)
129 3mkr_A Coatomer subunit epsilo 99.3 2E-11 6.8E-16 106.0 13.5 109 121-230 127-259 (291)
130 2kc7_A BFR218_protein; tetratr 99.3 5.4E-12 1.8E-16 90.0 8.1 71 127-211 3-74 (99)
131 3q7a_A Farnesyltransferase alp 99.3 1.9E-11 6.6E-16 112.6 12.4 153 63-231 25-192 (349)
132 1dce_A Protein (RAB geranylger 99.3 9.1E-12 3.1E-16 119.7 10.3 113 104-232 89-218 (567)
133 1hh8_A P67PHOX, NCF-2, neutrop 99.3 3.3E-11 1.1E-15 95.8 11.9 110 96-212 45-161 (213)
134 3edt_B KLC 2, kinesin light ch 99.3 6.1E-12 2.1E-16 101.6 7.5 124 98-232 53-195 (283)
135 2r5s_A Uncharacterized protein 99.3 1.4E-11 4.9E-16 97.5 9.3 81 106-200 92-172 (176)
136 2if4_A ATFKBP42; FKBP-like, al 99.3 4.2E-12 1.4E-16 112.7 6.9 109 119-232 174-290 (338)
137 4g1t_A Interferon-induced prot 99.3 1E-11 3.5E-16 110.0 9.2 126 100-231 63-200 (472)
138 1ihg_A Cyclophilin 40; ppiase 99.3 1.7E-11 5.7E-16 111.1 10.2 110 123-232 222-333 (370)
139 2e2e_A Formate-dependent nitri 99.2 4.2E-11 1.4E-15 93.6 10.5 96 97-208 53-151 (177)
140 1wao_1 Serine/threonine protei 99.2 2.6E-12 8.8E-17 119.9 3.8 98 121-232 3-100 (477)
141 3edt_B KLC 2, kinesin light ch 99.2 1.6E-11 5.6E-16 99.0 8.0 118 104-232 17-153 (283)
142 3qou_A Protein YBBN; thioredox 99.2 1.9E-11 6.6E-16 105.3 8.8 81 106-200 203-283 (287)
143 3mkr_A Coatomer subunit epsilo 99.2 1.1E-10 3.9E-15 101.2 13.2 110 103-231 80-225 (291)
144 2qfc_A PLCR protein; TPR, HTH, 99.2 2E-10 6.8E-15 97.8 12.5 120 101-232 128-263 (293)
145 4g1t_A Interferon-induced prot 99.2 9.6E-11 3.3E-15 103.7 10.6 122 104-232 229-398 (472)
146 2kat_A Uncharacterized protein 99.2 7.2E-11 2.5E-15 86.8 7.9 78 141-232 2-79 (115)
147 3dra_A Protein farnesyltransfe 99.2 1.6E-10 5.6E-15 103.8 11.6 112 104-231 85-211 (306)
148 3ulq_A Response regulator aspa 99.2 1E-10 3.5E-15 102.3 10.0 128 98-232 113-250 (383)
149 3ulq_A Response regulator aspa 99.2 9.8E-11 3.3E-15 102.5 9.8 125 100-232 155-290 (383)
150 1zu2_A Mitochondrial import re 99.2 2E-11 7E-16 101.4 5.1 84 135-232 13-117 (158)
151 3dss_A Geranylgeranyl transfer 99.2 2.4E-10 8.2E-15 104.3 12.4 112 104-231 90-218 (331)
152 3dss_A Geranylgeranyl transfer 99.2 3.9E-10 1.3E-14 103.0 13.7 113 103-231 45-170 (331)
153 3ro3_A PINS homolog, G-protein 99.2 9.8E-11 3.4E-15 86.4 7.9 124 99-232 20-155 (164)
154 2ifu_A Gamma-SNAP; membrane fu 99.1 1.1E-10 3.9E-15 100.7 9.1 130 94-232 82-221 (307)
155 2ifu_A Gamma-SNAP; membrane fu 99.1 8.3E-11 2.9E-15 101.5 7.6 125 97-232 45-181 (307)
156 1ouv_A Conserved hypothetical 99.1 1.5E-09 5.2E-14 90.1 14.9 47 104-154 22-72 (273)
157 3gw4_A Uncharacterized protein 99.1 2.5E-10 8.5E-15 89.3 9.5 125 98-232 36-173 (203)
158 3ro3_A PINS homolog, G-protein 99.1 2.6E-10 8.9E-15 84.1 9.0 102 123-232 8-115 (164)
159 3u3w_A Transcriptional activat 99.1 4.6E-10 1.6E-14 95.6 11.5 123 103-232 130-263 (293)
160 3nf1_A KLC 1, kinesin light ch 99.1 9.1E-11 3.1E-15 96.5 6.8 123 99-232 80-221 (311)
161 2qfc_A PLCR protein; TPR, HTH, 99.1 2.6E-09 8.9E-14 90.9 16.0 127 96-232 83-222 (293)
162 1ouv_A Conserved hypothetical 99.1 1E-09 3.5E-14 91.1 13.0 95 120-232 2-104 (273)
163 3nf1_A KLC 1, kinesin light ch 99.1 1.6E-10 5.5E-15 95.0 7.8 127 95-232 34-179 (311)
164 3u3w_A Transcriptional activat 99.1 9.1E-10 3.1E-14 93.7 12.4 128 95-232 82-222 (293)
165 2l6j_A TPR repeat-containing p 99.1 2.8E-11 9.7E-16 86.4 2.2 92 96-197 12-103 (111)
166 4a1s_A PINS, partner of inscut 99.1 1.6E-10 5.4E-15 100.3 7.2 127 96-232 56-209 (411)
167 3gw4_A Uncharacterized protein 99.1 1.2E-09 4.1E-14 85.3 11.4 118 105-232 9-133 (203)
168 3q15_A PSP28, response regulat 99.1 4.4E-10 1.5E-14 98.6 9.2 127 98-232 151-287 (378)
169 3q7a_A Farnesyltransferase alp 99.1 5.7E-10 2E-14 102.7 10.1 112 104-231 105-233 (349)
170 2ooe_A Cleavage stimulation fa 99.0 7.2E-10 2.5E-14 101.9 10.7 111 106-232 256-382 (530)
171 3bee_A Putative YFRE protein; 99.0 7.5E-10 2.6E-14 82.9 8.7 74 120-207 2-78 (93)
172 3sf4_A G-protein-signaling mod 99.0 3E-10 1E-14 96.9 7.3 125 98-232 197-333 (406)
173 3ro2_A PINS homolog, G-protein 99.0 3.6E-10 1.2E-14 92.6 7.2 126 97-232 14-169 (338)
174 2ooe_A Cleavage stimulation fa 99.0 1.9E-09 6.6E-14 99.1 12.5 121 105-232 303-451 (530)
175 4a1s_A PINS, partner of inscut 99.0 6.4E-10 2.2E-14 96.4 8.7 103 120-232 44-152 (411)
176 3sf4_A G-protein-signaling mod 99.0 1.6E-09 5.4E-14 92.4 10.9 102 121-232 6-113 (406)
177 2kc7_A BFR218_protein; tetratr 99.0 2.3E-10 7.7E-15 81.5 4.4 87 96-206 8-95 (99)
178 4f3v_A ESX-1 secretion system 99.0 1.2E-09 4.3E-14 97.9 9.7 122 96-232 110-234 (282)
179 3ro2_A PINS homolog, G-protein 99.0 2.4E-09 8.2E-14 87.6 10.5 100 123-232 4-109 (338)
180 3q15_A PSP28, response regulat 99.0 1.5E-09 5.3E-14 95.1 9.3 128 98-232 111-248 (378)
181 3ma5_A Tetratricopeptide repea 98.9 5.3E-09 1.8E-13 76.4 7.7 57 176-232 11-67 (100)
182 3rjv_A Putative SEL1 repeat pr 98.8 1.7E-08 5.7E-13 83.0 10.2 109 105-232 70-194 (212)
183 1hz4_A MALT regulatory protein 98.8 1.8E-08 6.3E-13 87.0 10.9 121 102-232 28-161 (373)
184 3rjv_A Putative SEL1 repeat pr 98.8 2.1E-08 7.3E-13 82.3 9.5 108 104-232 34-155 (212)
185 1na3_A Designed protein CTPR2; 98.8 2.7E-08 9.2E-13 68.5 8.1 74 97-186 18-91 (91)
186 4f3v_A ESX-1 secretion system 98.7 3.5E-09 1.2E-13 95.0 3.3 122 103-232 21-197 (282)
187 2v5f_A Prolyl 4-hydroxylase su 98.7 8.6E-08 3E-12 71.4 10.2 84 123-213 4-87 (104)
188 1hz4_A MALT regulatory protein 98.7 4.2E-08 1.4E-12 84.7 9.5 125 100-232 65-200 (373)
189 3n71_A Histone lysine methyltr 98.7 3.3E-08 1.1E-12 94.0 8.9 127 96-233 317-462 (490)
190 1pc2_A Mitochondria fission pr 98.7 7.6E-08 2.6E-12 79.6 9.3 97 105-217 15-116 (152)
191 3u64_A Protein TP_0956; tetrat 98.6 1.9E-07 6.5E-12 85.0 9.7 103 118-232 146-266 (301)
192 3ly7_A Transcriptional activat 98.5 1E-07 3.5E-12 88.8 7.0 126 71-212 220-349 (372)
193 3u64_A Protein TP_0956; tetrat 98.5 1.9E-07 6.6E-12 84.9 7.3 88 105-208 180-277 (301)
194 2xm6_A Protein corresponding t 98.5 1.7E-06 5.7E-11 78.7 13.2 93 122-232 326-429 (490)
195 1klx_A Cysteine rich protein B 98.5 2E-06 6.9E-11 66.7 11.9 104 105-232 12-123 (138)
196 3ly7_A Transcriptional activat 98.5 5.1E-07 1.7E-11 84.1 9.6 111 105-232 216-336 (372)
197 2xm6_A Protein corresponding t 98.4 4.4E-06 1.5E-10 75.9 14.4 106 105-232 276-393 (490)
198 3e4b_A ALGK; tetratricopeptide 98.4 1.4E-06 4.8E-11 79.9 10.9 103 121-231 173-312 (452)
199 3e4b_A ALGK; tetratricopeptide 98.3 3.1E-06 1.1E-10 77.6 11.7 92 121-232 245-348 (452)
200 4b4t_Q 26S proteasome regulato 98.3 3.8E-06 1.3E-10 73.3 10.6 130 97-232 13-201 (434)
201 3qww_A SET and MYND domain-con 98.2 2.7E-06 9.1E-11 79.7 8.2 94 104-208 314-423 (433)
202 3qww_A SET and MYND domain-con 98.1 5.7E-06 1.9E-10 77.5 8.8 86 136-232 310-408 (433)
203 3n71_A Histone lysine methyltr 98.1 1E-05 3.5E-10 76.9 10.5 96 131-232 316-419 (490)
204 3qwp_A SET and MYND domain-con 98.1 6.8E-06 2.3E-10 76.5 8.9 103 95-208 294-412 (429)
205 3bee_A Putative YFRE protein; 98.1 1.1E-05 3.9E-10 59.9 8.3 57 176-232 10-69 (93)
206 1xi4_A Clathrin heavy chain; a 98.1 9.7E-06 3.3E-10 86.7 10.8 119 86-224 1060-1185(1630)
207 1klx_A Cysteine rich protein B 98.0 6.8E-05 2.3E-09 57.9 10.6 79 105-203 42-128 (138)
208 3mv2_B Coatomer subunit epsilo 97.9 3.7E-05 1.3E-09 69.8 10.0 173 23-232 16-204 (310)
209 3qwp_A SET and MYND domain-con 97.9 3.3E-05 1.1E-09 71.9 9.6 89 133-232 296-397 (429)
210 4b4t_Q 26S proteasome regulato 97.8 0.00011 3.7E-09 64.0 10.4 120 105-232 112-242 (434)
211 3mv2_B Coatomer subunit epsilo 97.8 0.00017 5.7E-09 65.4 11.5 118 96-230 108-235 (310)
212 1xi4_A Clathrin heavy chain; a 97.7 0.00024 8.3E-09 76.1 13.2 105 120-232 1130-1247(1630)
213 1nzn_A CGI-135 protein, fissio 97.7 0.00012 4.2E-09 58.7 8.3 97 105-216 18-118 (126)
214 1b89_A Protein (clathrin heavy 97.7 0.00012 4E-09 69.8 8.5 114 95-230 129-267 (449)
215 4e6h_A MRNA 3'-END-processing 97.6 0.00023 7.8E-09 70.3 9.3 111 107-233 328-461 (679)
216 1b89_A Protein (clathrin heavy 97.5 0.00013 4.4E-09 69.5 7.0 79 122-227 120-198 (449)
217 2v5f_A Prolyl 4-hydroxylase su 97.5 0.00032 1.1E-08 51.8 7.6 59 174-232 7-72 (104)
218 1pc2_A Mitochondria fission pr 97.4 0.00045 1.5E-08 56.9 7.3 79 139-231 13-96 (152)
219 2ff4_A Probable regulatory pro 97.1 0.0077 2.6E-07 55.0 13.1 109 125-233 116-232 (388)
220 1y8m_A FIS1; mitochondria, unk 97.1 0.011 3.7E-07 48.5 12.5 85 120-217 35-122 (144)
221 3ffl_A Anaphase-promoting comp 96.9 0.0059 2E-07 51.2 9.9 103 124-231 20-147 (167)
222 3o48_A Mitochondria fission 1 96.9 0.0064 2.2E-07 49.3 9.7 83 122-217 38-123 (134)
223 4h7y_A Dual specificity protei 96.8 0.0086 2.9E-07 50.0 10.1 105 119-232 8-120 (161)
224 4e6h_A MRNA 3'-END-processing 96.8 0.0066 2.2E-07 59.9 10.9 97 123-232 433-530 (679)
225 2uy1_A Cleavage stimulation fa 96.7 0.019 6.4E-07 53.8 12.8 49 107-158 198-246 (493)
226 4g26_A Pentatricopeptide repea 96.3 0.055 1.9E-06 50.9 13.3 111 105-232 87-201 (501)
227 3ffl_A Anaphase-promoting comp 94.8 0.043 1.5E-06 45.9 5.6 105 93-197 25-147 (167)
228 4g26_A Pentatricopeptide repea 94.6 0.66 2.3E-05 43.5 14.0 122 93-231 31-165 (501)
229 1nzn_A CGI-135 protein, fissio 94.0 0.14 4.8E-06 40.8 6.9 79 139-231 16-99 (126)
230 3o48_A Mitochondria fission 1 93.9 0.04 1.4E-06 44.6 3.5 73 74-158 39-112 (134)
231 2uy1_A Cleavage stimulation fa 93.7 0.49 1.7E-05 44.1 11.1 93 125-232 287-380 (493)
232 1ya0_A SMG-7 transcript varian 93.3 0.5 1.7E-05 45.1 10.5 77 126-216 154-230 (497)
233 4gns_B Protein CSD3, chitin bi 93.0 1.2 3.9E-05 44.9 13.0 119 104-229 265-394 (754)
234 4fhn_B Nucleoporin NUP120; pro 92.8 0.46 1.6E-05 49.0 10.1 112 119-230 837-962 (1139)
235 2ff4_A Probable regulatory pro 92.7 0.31 1.1E-05 44.2 7.9 62 125-200 172-233 (388)
236 1y8m_A FIS1; mitochondria, unk 91.9 0.13 4.6E-06 42.0 3.9 50 107-158 61-111 (144)
237 1zbp_A Hypothetical protein VP 91.8 0.26 9E-06 44.1 6.1 62 133-208 6-67 (273)
238 3txn_A 26S proteasome regulato 89.7 3.2 0.00011 38.4 11.5 97 128-232 103-207 (394)
239 3mkq_A Coatomer beta'-subunit; 89.6 1.5 5E-05 41.2 9.3 32 119-150 676-707 (814)
240 3kae_A CDC27, possible protein 88.6 2.2 7.5E-05 36.8 8.8 76 121-204 59-146 (242)
241 4b4t_R RPN7, 26S proteasome re 88.6 0.81 2.8E-05 42.0 6.7 100 122-232 129-234 (429)
242 3kae_A CDC27, possible protein 88.3 3.8 0.00013 35.4 10.1 93 119-230 28-138 (242)
243 1zbp_A Hypothetical protein VP 86.7 4.1 0.00014 36.4 9.8 57 100-158 9-65 (273)
244 4b4t_S RPN3, 26S proteasome re 86.3 0.29 1E-05 47.4 2.3 92 54-158 209-304 (523)
245 1qsa_A Protein (soluble lytic 83.8 1.7 5.8E-05 42.5 6.4 78 140-232 268-345 (618)
246 3spa_A Mtrpol, DNA-directed RN 80.1 12 0.0004 39.5 11.2 91 125-231 128-226 (1134)
247 3mkq_A Coatomer beta'-subunit; 79.8 11 0.00036 35.3 10.1 22 177-198 686-707 (814)
248 3mkq_B Coatomer subunit alpha; 79.8 6.9 0.00024 32.6 7.9 30 122-151 32-61 (177)
249 4gns_B Protein CSD3, chitin bi 77.0 3.4 0.00012 41.5 6.0 59 126-198 339-397 (754)
250 3ax2_A Mitochondrial import re 74.2 4.4 0.00015 29.3 4.5 29 128-156 21-49 (73)
251 4h7y_A Dual specificity protei 73.6 14 0.00047 30.7 7.9 83 123-221 60-142 (161)
252 2w2u_A Hypothetical P60 katani 69.4 7.3 0.00025 28.4 4.8 29 125-153 20-48 (83)
253 2v6y_A AAA family ATPase, P60 67.9 8.2 0.00028 28.0 4.8 30 124-153 11-40 (83)
254 1ya0_A SMG-7 transcript varian 67.8 13 0.00046 35.2 7.5 58 174-231 154-211 (497)
255 2crb_A Nuclear receptor bindin 65.6 9.4 0.00032 29.2 4.8 30 123-152 14-43 (97)
256 4gq2_M Nucleoporin NUP120; bet 60.9 27 0.00092 35.4 8.7 90 118-207 834-933 (950)
257 1om2_A Protein (mitochondrial 60.4 7.6 0.00026 29.5 3.5 29 128-156 24-52 (95)
258 4a5x_A MITD1, MIT domain-conta 60.1 14 0.00047 27.0 4.8 30 124-153 16-45 (86)
259 2v6x_A Vacuolar protein sortin 59.2 15 0.00051 26.3 4.8 30 124-153 13-42 (85)
260 1wfd_A Hypothetical protein 15 59.0 14 0.00049 27.2 4.8 30 124-153 15-44 (93)
261 3t5x_A PCI domain-containing p 56.0 15 0.0005 30.6 4.9 34 125-158 15-48 (203)
262 3myv_A SUSD superfamily protei 53.9 26 0.00089 32.1 6.7 55 140-200 164-218 (454)
263 2cfu_A SDSA1; SDS-hydrolase, l 53.1 18 0.0006 35.3 5.6 49 172-220 449-497 (658)
264 2ijq_A Hypothetical protein; s 52.5 47 0.0016 27.1 7.3 68 127-200 35-103 (161)
265 2cpt_A SKD1 protein, vacuolar 51.4 19 0.00064 27.8 4.5 29 125-153 19-47 (117)
266 3kez_A Putative sugar binding 47.8 34 0.0012 31.4 6.4 55 140-200 170-224 (461)
267 3mcx_A SUSD superfamily protei 47.0 33 0.0011 31.4 6.2 56 140-201 176-231 (477)
268 3ax2_A Mitochondrial import re 45.2 30 0.001 24.9 4.4 32 176-207 21-52 (73)
269 2crb_A Nuclear receptor bindin 44.2 20 0.00067 27.4 3.4 24 176-199 19-42 (97)
270 2rpa_A Katanin P60 ATPase-cont 43.4 21 0.00072 26.0 3.4 28 126-153 14-41 (78)
271 2cwy_A Hypothetical protein TT 42.4 57 0.002 24.0 5.8 65 128-202 5-70 (94)
272 2w2u_A Hypothetical P60 katani 42.2 14 0.00047 26.9 2.3 28 188-215 42-69 (83)
273 1qsa_A Protein (soluble lytic 42.1 42 0.0014 32.6 6.3 55 131-200 293-347 (618)
274 2v6y_A AAA family ATPase, P60 41.9 16 0.00054 26.4 2.5 50 141-212 9-58 (83)
275 3lew_A SUSD-like carbohydrate 38.7 60 0.0021 30.1 6.6 58 141-201 175-232 (495)
276 1wy6_A Hypothetical protein ST 38.7 97 0.0033 25.7 7.0 59 94-154 97-155 (172)
277 1wfd_A Hypothetical protein 15 38.3 21 0.00072 26.3 2.8 59 140-220 12-70 (93)
278 3snx_A SUSD homolog, putative 36.8 56 0.0019 30.1 6.0 61 140-201 160-220 (460)
279 4a5x_A MITD1, MIT domain-conta 36.1 32 0.0011 25.0 3.5 43 178-220 22-71 (86)
280 2v6x_A Vacuolar protein sortin 34.8 58 0.002 23.1 4.6 32 189-220 37-68 (85)
281 4b4t_S RPN3, 26S proteasome re 34.0 55 0.0019 31.5 5.6 73 125-206 232-304 (523)
282 3qnk_A Putative lipoprotein; a 33.9 78 0.0027 29.4 6.6 75 124-201 109-211 (517)
283 2ijq_A Hypothetical protein; s 33.5 1.3E+02 0.0046 24.4 7.2 56 177-232 37-101 (161)
284 3txn_A 26S proteasome regulato 33.5 1.1E+02 0.0037 28.1 7.4 111 103-221 114-235 (394)
285 4b4t_R RPN7, 26S proteasome re 33.2 48 0.0016 30.1 4.9 60 173-232 132-194 (429)
286 2p58_C Putative type III secre 32.1 43 0.0015 26.2 3.7 47 178-229 46-92 (116)
287 3spa_A Mtrpol, DNA-directed RN 31.4 1.1E+02 0.0039 32.2 7.8 57 175-232 130-191 (1134)
288 3t5x_A PCI domain-containing p 30.6 82 0.0028 25.9 5.6 32 176-207 18-49 (203)
289 4b4t_P 26S proteasome regulato 30.3 3.1E+02 0.011 24.9 12.4 101 123-232 136-244 (445)
290 3hdx_A SUSD homolog, SUSD supe 29.7 98 0.0034 28.3 6.4 78 124-201 112-226 (478)
291 4gq2_M Nucleoporin NUP120; bet 29.4 77 0.0026 32.0 6.1 60 120-199 808-867 (950)
292 3mkq_B Coatomer subunit alpha; 28.4 1.1E+02 0.0039 25.1 6.0 80 134-232 15-115 (177)
293 2uwj_G Type III export protein 26.7 41 0.0014 26.3 2.7 47 178-229 45-91 (115)
294 2cpt_A SKD1 protein, vacuolar 26.3 51 0.0017 25.3 3.3 33 188-220 41-74 (117)
295 3jq1_A SUSD superfamily protei 25.0 76 0.0026 29.2 4.8 55 140-200 154-208 (481)
296 2dl1_A Spartin; SPG20, MIT, st 24.9 91 0.0031 24.3 4.5 33 124-156 22-61 (116)
297 2d2s_A Exocyst complex compone 24.6 2.5E+02 0.0087 23.6 7.7 20 214-233 99-118 (235)
298 2yhe_A SEC-alkyl sulfatase; hy 30.1 16 0.00055 36.0 0.0 53 172-224 461-513 (668)
299 1om2_A Protein (mitochondrial 23.9 53 0.0018 24.7 2.8 30 176-205 24-53 (95)
300 2rpa_A Katanin P60 ATPase-cont 23.9 70 0.0024 23.1 3.4 26 176-201 16-41 (78)
301 3i4g_A SUSD-like carbohydrate 22.9 1.6E+02 0.0054 27.5 6.6 77 124-201 123-227 (528)
302 4a1g_A Mitotic checkpoint seri 22.8 2.9E+02 0.01 22.0 7.5 53 103-155 80-132 (152)
303 3lew_A SUSD-like carbohydrate 20.1 99 0.0034 28.6 4.5 33 121-153 200-232 (495)
No 1
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.81 E-value=1.8e-19 Score=138.94 Aligned_cols=101 Identities=14% Similarity=0.213 Sum_probs=79.8
Q ss_pred cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHHHcCCcHHHHHHHHH
Q 026773 118 NNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSHFNRFEEGAEQFRI 197 (233)
Q Consensus 118 ~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~lGryeeAi~~f~k 197 (233)
.+||+.+++|.++|.+++..|+|++|++.|++||+++|+++ ..+. ++|.++..+|++++|+++|++
T Consensus 7 ~inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~-----~~~~---------~~~~~~~~~~~~~~A~~~~~~ 72 (126)
T 4gco_A 7 YINPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENA-----ILYS---------NRAACLTKLMEFQRALDDCDT 72 (126)
T ss_dssp CCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH-----HHHH---------HHHHHHHHTTCHHHHHHHHHH
T ss_pred HHCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-----HHHH---------HHhhHHHhhccHHHHHHHHHH
Confidence 47888888888888888888888888888888888888776 3333 478888888888888888888
Q ss_pred HHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhh
Q 026773 198 DVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLEA 232 (233)
Q Consensus 198 AL~lnP~d~e~~~~~~l~~a~Lg~~dEA~~~~l~~ 232 (233)
+++++|++++.+..++.|+..+|++++|...|.++
T Consensus 73 al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~a 107 (126)
T 4gco_A 73 CIRLDSKFIKGYIRKAACLVAMREWSKAQRAYEDA 107 (126)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHhhhhhhHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 88888888888777888888888888888877654
No 2
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.79 E-value=3.5e-19 Score=143.59 Aligned_cols=101 Identities=13% Similarity=0.068 Sum_probs=95.7
Q ss_pred cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHHHcCCcHHHHHHHHH
Q 026773 118 NNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSHFNRFEEGAEQFRI 197 (233)
Q Consensus 118 ~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~lGryeeAi~~f~k 197 (233)
+++|+++++++.+|.+++.+|++++|+..|+++++++|+++ .++. ++|.++..+|+|++|++.|++
T Consensus 30 ~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~-----~~~~---------~lg~~~~~~g~~~~Ai~~~~~ 95 (151)
T 3gyz_A 30 AIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNV-----DYIM---------GLAAIYQIKEQFQQAADLYAV 95 (151)
T ss_dssp CSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH-----HHHH---------HHHHHHHHTTCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-----HHHH---------HHHHHHHHHccHHHHHHHHHH
Confidence 89999999999999999999999999999999999999998 4433 599999999999999999999
Q ss_pred HHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhh
Q 026773 198 DVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLEA 232 (233)
Q Consensus 198 AL~lnP~d~e~~~~~~l~~a~Lg~~dEA~~~~l~~ 232 (233)
+++++|++++.+++++.|+..+|++++|+..|.++
T Consensus 96 al~l~P~~~~~~~~lg~~~~~lg~~~eA~~~~~~a 130 (151)
T 3gyz_A 96 AFALGKNDYTPVFHTGQCQLRLKAPLKAKECFELV 130 (151)
T ss_dssp HHHHSSSCCHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999865
No 3
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.74 E-value=1.5e-17 Score=128.04 Aligned_cols=104 Identities=12% Similarity=0.196 Sum_probs=92.4
Q ss_pred hHHHhccCcchHHHHHHHHhcccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhh
Q 026773 96 PTFTRRLFIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGII 175 (233)
Q Consensus 96 ~~~~r~~~~~~a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~ 175 (233)
..+-+.+-...|...|++++ +++|+++.+|.++|.++..+|++++|+++|++||+++|+++ ..++
T Consensus 21 ~~~~~~g~~~~A~~~~~~al--~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~-----~a~~-------- 85 (126)
T 4gco_A 21 NEYFKKGDYPTAMRHYNEAV--KRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFI-----KGYI-------- 85 (126)
T ss_dssp HHHHHTTCHHHHHHHHHHHH--HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH-----HHHH--------
T ss_pred HHHHHcCCHHHHHHHHHHHH--HhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhh-----HHHH--------
Confidence 44556667788999999999 99999999999999999999999999999999999999988 3433
Q ss_pred hhhHHHHHHcCCcHHHHHHHHHHHHcCCCCHHHHHHHHHH
Q 026773 176 LKKLIRVSHFNRFEEGAEQFRIDVAQNPNDTEESIWCFLC 215 (233)
Q Consensus 176 ~~rG~al~~lGryeeAi~~f~kAL~lnP~d~e~~~~~~l~ 215 (233)
++|.++..+|++++|+++|+++++++|++++....++.|
T Consensus 86 -~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~ 124 (126)
T 4gco_A 86 -RKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNC 124 (126)
T ss_dssp -HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred -HHHHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHh
Confidence 599999999999999999999999999999876555444
No 4
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.73 E-value=2.4e-17 Score=129.94 Aligned_cols=108 Identities=11% Similarity=0.089 Sum_probs=93.2
Q ss_pred HHHHHHhcccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHHHcCCc
Q 026773 109 GIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSHFNRF 188 (233)
Q Consensus 109 ~i~~~~i~~~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~lGry 188 (233)
..+..++ +++|+++.+++.+|.+++..|++++|+..|+++++++|+++ .+++ ++|.++..+|++
T Consensus 8 ~~~~~al--~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~-----~~~~---------~lg~~~~~~g~~ 71 (148)
T 2vgx_A 8 GTIAMLN--EISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDS-----RFFL---------GLGACRQAMGQY 71 (148)
T ss_dssp CSHHHHT--TCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH-----HHHH---------HHHHHHHHTTCH
T ss_pred hhHHHHH--cCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccH-----HHHH---------HHHHHHHHHhhH
Confidence 3566667 78899999999999999999999999999999999999887 3433 489999999999
Q ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhh
Q 026773 189 EEGAEQFRIDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLEA 232 (233)
Q Consensus 189 eeAi~~f~kAL~lnP~d~e~~~~~~l~~a~Lg~~dEA~~~~l~~ 232 (233)
++|++.|+++++++|++++.++.++.|+..+|++++|...|.++
T Consensus 72 ~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 115 (148)
T 2vgx_A 72 DLAIHSYSYGAVMDIXEPRFPFHAAECLLQXGELAEAESGLFLA 115 (148)
T ss_dssp HHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCchHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99999999999999999998888888999999999999888764
No 5
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.73 E-value=4.5e-17 Score=134.41 Aligned_cols=121 Identities=12% Similarity=-0.000 Sum_probs=104.9
Q ss_pred hHHHhccCcchHHHHHHHHhcccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhh
Q 026773 96 PTFTRRLFIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGII 175 (233)
Q Consensus 96 ~~~~r~~~~~~a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~ 175 (233)
..+.+.+-..+|...+.+++ +++|+++.+|..+|.++..+|++++|+..|++|++++|+++ ..+.
T Consensus 13 ~~~~~~g~~~~A~~~~~~al--~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~-----~a~~-------- 77 (217)
T 2pl2_A 13 VQLYALGRYDAALTLFERAL--KENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYL-----GGYM-------- 77 (217)
T ss_dssp HHHHHTTCHHHHHHHHHHHH--TTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH-----HHHH--------
T ss_pred HHHHHcCCHHHHHHHHHHHH--HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH-----HHHH--------
Confidence 34555566678999999999 99999999999999999999999999999999999999988 3433
Q ss_pred hhhHHHHHHc-----------CCcHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhh
Q 026773 176 LKKLIRVSHF-----------NRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLEA 232 (233)
Q Consensus 176 ~~rG~al~~l-----------GryeeAi~~f~kAL~lnP~d~e~~~~~~l~~a~Lg~~dEA~~~~l~~ 232 (233)
++|.++..+ |++++|++.|+++++++|++++.+..++.++..+|++++|+..|.++
T Consensus 78 -~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 144 (217)
T 2pl2_A 78 -VLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQA 144 (217)
T ss_dssp -HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred -HHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 488888888 88888888888888888888888888888888888888888888764
No 6
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.73 E-value=1.1e-16 Score=125.73 Aligned_cols=130 Identities=11% Similarity=0.060 Sum_probs=114.0
Q ss_pred hHHHhccCcchHHHHHHHHhcccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhh------
Q 026773 96 PTFTRRLFIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTI------ 169 (233)
Q Consensus 96 ~~~~r~~~~~~a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~------ 169 (233)
..+.+.+-..+|...|++++ +++|+++++|..+|.++..+|++++|+..++++++.+|+++ ..+...
T Consensus 13 ~~~~~~g~~~~A~~~~~~al--~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~~~~~~~ 85 (184)
T 3vtx_A 13 DKKRTKGDFDGAIRAYKKVL--KADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSA-----EAYYILGSANFM 85 (184)
T ss_dssp HHHHHHTCHHHHHHHHHHHH--HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCH-----HHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHH--HhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhH-----HHHHHHHHHHHH
Confidence 34556667788999999999 89999999999999999999999999999999999999887 222210
Q ss_pred -------------------hhhhhhhhhHHHHHHcCCcHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 026773 170 -------------------SIVGIILKKLIRVSHFNRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFL 230 (233)
Q Consensus 170 -------------------~~~~a~~~rG~al~~lGryeeAi~~f~kAL~lnP~d~e~~~~~~l~~a~Lg~~dEA~~~~l 230 (233)
.-..++..+|.++..+|++++|++.|+++++++|++++.+..++.++.++|++++|+..|.
T Consensus 86 ~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~ 165 (184)
T 3vtx_A 86 IDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEAVKYFK 165 (184)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHHHHHHH
Confidence 1167788999999999999999999999999999999999999999999999999999997
Q ss_pred hh
Q 026773 231 EA 232 (233)
Q Consensus 231 ~~ 232 (233)
++
T Consensus 166 ~a 167 (184)
T 3vtx_A 166 KA 167 (184)
T ss_dssp HH
T ss_pred HH
Confidence 64
No 7
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=99.73 E-value=2e-17 Score=127.54 Aligned_cols=107 Identities=15% Similarity=0.144 Sum_probs=87.2
Q ss_pred HHHHHhcccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHHHcCCcH
Q 026773 110 IWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSHFNRFE 189 (233)
Q Consensus 110 i~~~~i~~~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~lGrye 189 (233)
.+.+++ +++|+++++++.+|.+++..|++++|+..|+++++++|+++ .+++ ++|.++..+|+++
T Consensus 6 ~l~~al--~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~-----~~~~---------~lg~~~~~~g~~~ 69 (142)
T 2xcb_A 6 TLAMLR--GLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDA-----RYFL---------GLGACRQSLGLYE 69 (142)
T ss_dssp ---CCT--TCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH-----HHHH---------HHHHHHHHTTCHH
T ss_pred hHHHHH--cCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccH-----HHHH---------HHHHHHHHHhhHH
Confidence 344445 78888888888888888888888888888888888888887 3433 4888888888888
Q ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhh
Q 026773 190 EGAEQFRIDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLEA 232 (233)
Q Consensus 190 eAi~~f~kAL~lnP~d~e~~~~~~l~~a~Lg~~dEA~~~~l~~ 232 (233)
+|++.|+++++++|++++.+..++.|+..+|++++|...|.++
T Consensus 70 ~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 112 (142)
T 2xcb_A 70 QALQSYSYGALMDINEPRFPFHAAECHLQLGDLDGAESGFYSA 112 (142)
T ss_dssp HHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 8888888888888888888888888888888888888887754
No 8
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=99.71 E-value=1e-16 Score=119.60 Aligned_cols=87 Identities=15% Similarity=0.166 Sum_probs=43.4
Q ss_pred hccCcchHHHHHHHHhcccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhH
Q 026773 100 RRLFIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKL 179 (233)
Q Consensus 100 r~~~~~~a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG 179 (233)
+.+-...|...|.+++ +++|+++.+|.++|.++..+|++++|+++|++|++++|+++ ..++ ++|
T Consensus 16 ~~~~~~~A~~~~~~al--~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~-----~~~~---------~lg 79 (126)
T 3upv_A 16 TKSDWPNAVKAYTEMI--KRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFV-----RAYI---------RKA 79 (126)
T ss_dssp HTTCHHHHHHHHHHHH--HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH-----HHHH---------HHH
T ss_pred HhcCHHHHHHHHHHHH--HhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcH-----HHHH---------HHH
Confidence 3333444455555554 44555555555555555555555555555555555555444 2222 255
Q ss_pred HHHHHcCCcHHHHHHHHHHHHcC
Q 026773 180 IRVSHFNRFEEGAEQFRIDVAQN 202 (233)
Q Consensus 180 ~al~~lGryeeAi~~f~kAL~ln 202 (233)
.++..+|++++|++.|+++++++
T Consensus 80 ~~~~~~~~~~~A~~~~~~al~~~ 102 (126)
T 3upv_A 80 TAQIAVKEYASALETLDAARTKD 102 (126)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCHHHHHHHHHHHHHhC
Confidence 55555555555555555555555
No 9
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.70 E-value=3.4e-17 Score=128.78 Aligned_cols=109 Identities=9% Similarity=-0.020 Sum_probs=88.8
Q ss_pred chHHHHHHHHhcccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHHH
Q 026773 105 PSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSH 184 (233)
Q Consensus 105 ~~a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~ 184 (233)
..+...+..++ ..+|+++.+++.+|.+++.+|+|++|++.|++||+++|+++ ..+. ++|.++..
T Consensus 14 e~ai~~~~~a~--~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~-----~a~~---------~lg~~~~~ 77 (150)
T 4ga2_A 14 ERYIASVQGST--PSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDP-----KAHR---------FLGLLYEL 77 (150)
T ss_dssp HHHHHHHHHHS--CSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH-----HHHH---------HHHHHHHH
T ss_pred HHHHHHHHHhc--ccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-----HHHH---------HHHHHHHH
Confidence 45666666666 77888888888888888888888888888888888888887 3333 48888888
Q ss_pred cCCcHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 026773 185 FNRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQLYGVDEARNRF 229 (233)
Q Consensus 185 lGryeeAi~~f~kAL~lnP~d~e~~~~~~l~~a~Lg~~dEA~~~~ 229 (233)
+|++++|++.|+++++++|++++.+..++.++.++|++++|...+
T Consensus 78 ~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~ 122 (150)
T 4ga2_A 78 EENTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYW 122 (150)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHH
T ss_pred cCchHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHH
Confidence 888888888888888888888888888888888888887766654
No 10
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.69 E-value=1e-16 Score=146.90 Aligned_cols=121 Identities=11% Similarity=-0.032 Sum_probs=96.3
Q ss_pred hHHHhccCcchHHHHHHHHhcccCCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhh
Q 026773 96 PTFTRRLFIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGD-VVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGI 174 (233)
Q Consensus 96 ~~~~r~~~~~~a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~lGd-yeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a 174 (233)
..+.+.+....|...+++++ +++|+++.+|++||.++..+|+ +++|+++|++||+++|+++ ..++
T Consensus 105 ~~~~~~g~~~~Al~~~~~al--~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~-----~a~~------- 170 (382)
T 2h6f_A 105 AVLQRDERSERAFKLTRDAI--ELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNY-----QVWH------- 170 (382)
T ss_dssp HHHHHTCCCHHHHHHHHHHH--HHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCH-----HHHH-------
T ss_pred HHHHHCCChHHHHHHHHHHH--HhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCH-----HHHH-------
Confidence 34555566788899999999 8999999999999999999996 9999999999999999987 3333
Q ss_pred hhhhHHHHHHcCCcHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhh
Q 026773 175 ILKKLIRVSHFNRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLEA 232 (233)
Q Consensus 175 ~~~rG~al~~lGryeeAi~~f~kAL~lnP~d~e~~~~~~l~~a~Lg~~dEA~~~~l~~ 232 (233)
++|.++..+|++++|+++|+++++++|+++..+.+++.++..+|++++|+..+.++
T Consensus 171 --~~g~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~a 226 (382)
T 2h6f_A 171 --HRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQL 226 (382)
T ss_dssp --HHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHH
T ss_pred --HHHHHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 47777777777777777777777777777777777777777777777777776553
No 11
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.68 E-value=2.4e-16 Score=156.10 Aligned_cols=120 Identities=10% Similarity=0.045 Sum_probs=80.2
Q ss_pred hHHHhccCcchHHHHHHHHhcccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhh
Q 026773 96 PTFTRRLFIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGII 175 (233)
Q Consensus 96 ~~~~r~~~~~~a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~ 175 (233)
..+.+.+-..+|...|.+++ +++|+++.+|.++|.++..+|++++|++.|++||+++|+++ ..+.
T Consensus 17 ~~~~~~G~~~eAi~~~~kAl--~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~-----~a~~-------- 81 (723)
T 4gyw_A 17 NIKREQGNIEEAVRLYRKAL--EVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFA-----DAYS-------- 81 (723)
T ss_dssp HHHHHTTCHHHHHHHHHHHH--HHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH-----HHHH--------
T ss_pred HHHHHcCCHHHHHHHHHHHH--HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-----HHHH--------
Confidence 33445555566777777777 77777777777777777777777777777777777777766 2322
Q ss_pred hhhHHHHHHcCCcHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHh
Q 026773 176 LKKLIRVSHFNRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLE 231 (233)
Q Consensus 176 ~~rG~al~~lGryeeAi~~f~kAL~lnP~d~e~~~~~~l~~a~Lg~~dEA~~~~l~ 231 (233)
++|.++..+|++++|++.|+++++++|++++.+.+++.++..+|++++|+..|.+
T Consensus 82 -nLg~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~ 136 (723)
T 4gyw_A 82 -NMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRT 136 (723)
T ss_dssp -HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred -HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 3666666666666666666666666666666666666666666666666666554
No 12
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.68 E-value=3.3e-16 Score=129.16 Aligned_cols=119 Identities=10% Similarity=0.042 Sum_probs=93.6
Q ss_pred hHHHhccCcchHHHHHHHHhcccCCCCCHHHHHHHHHHHHHc-----------CCHHHHHHHHHHHHhhCCCCCCCccch
Q 026773 96 PTFTRRLFIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQ-----------GDVVGSVAEFDKAIELDPRQKISGKGA 164 (233)
Q Consensus 96 ~~~~r~~~~~~a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~l-----------GdyeeAIadfdkAIeLdP~~~~~~~~~ 164 (233)
..+.+.+-..+|...+.+++ +++|+++.+|.++|.++..+ |++++|++.|++|++++|+++ .
T Consensus 47 ~~~~~~g~~~~A~~~~~~al--~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~-----~ 119 (217)
T 2pl2_A 47 RTQLKLGLVNPALENGKTLV--ARTPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYA-----P 119 (217)
T ss_dssp HHHHHTTCHHHHHHHHHHHH--HHCTTCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCH-----H
T ss_pred HHHHHcCCHHHHHHHHHHHH--HhCCCcHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccH-----H
Confidence 34445555678899999999 89999999999999999999 999999999999999999988 3
Q ss_pred hhhhhhhhhhhhhhHHHHHHcCCcHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHh
Q 026773 165 YRFTISIVGIILKKLIRVSHFNRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLE 231 (233)
Q Consensus 165 y~~~~~~~~a~~~rG~al~~lGryeeAi~~f~kAL~lnP~d~e~~~~~~l~~a~Lg~~dEA~~~~l~ 231 (233)
.+. ++|.++..+|++++|++.|+++++++ ++++.+..++.++..+|++++|...+.+
T Consensus 120 ~~~---------~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~ 176 (217)
T 2pl2_A 120 LHL---------QRGLVYALLGERDKAEASLKQALALE-DTPEIRSALAELYLSMGRLDEALAQYAK 176 (217)
T ss_dssp HHH---------HHHHHHHHTTCHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHH---------HHHHHHHHcCChHHHHHHHHHHHhcc-cchHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 333 36777777777777777777777777 6666666666666677777777766654
No 13
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=99.67 E-value=1.4e-15 Score=113.35 Aligned_cols=101 Identities=17% Similarity=0.193 Sum_probs=85.6
Q ss_pred cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHHHcCCcHHHHHHHHH
Q 026773 118 NNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSHFNRFEEGAEQFRI 197 (233)
Q Consensus 118 ~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~lGryeeAi~~f~k 197 (233)
..+|.++.+|..+|.+++..|++++|+..|+++++++|+++ ..+. ++|.++..+|++++|++.|++
T Consensus 3 ~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~-----~~~~---------~l~~~~~~~~~~~~A~~~~~~ 68 (137)
T 3q49_B 3 HMKSPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVA-----VYYT---------NRALCYLKMQQPEQALADCRR 68 (137)
T ss_dssp ---CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH-----HHHH---------HHHHHHHHTTCHHHHHHHHHH
T ss_pred CCccccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcH-----HHHH---------HHHHHHHHhcCHHHHHHHHHH
Confidence 56788899999999999999999999999999999999877 3333 489999999999999999999
Q ss_pred HHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhh
Q 026773 198 DVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLEA 232 (233)
Q Consensus 198 AL~lnP~d~e~~~~~~l~~a~Lg~~dEA~~~~l~~ 232 (233)
+++++|+++..+..++.++..+|++++|...+.++
T Consensus 69 al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 103 (137)
T 3q49_B 69 ALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRA 103 (137)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHhCchhHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 99999999988888888888999999998888764
No 14
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=99.66 E-value=2.3e-16 Score=121.05 Aligned_cols=98 Identities=18% Similarity=0.159 Sum_probs=86.0
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHHHcCCcHHHHHHHHHHHH
Q 026773 121 SREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSHFNRFEEGAEQFRIDVA 200 (233)
Q Consensus 121 P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~lGryeeAi~~f~kAL~ 200 (233)
++.+.++.++|.+++.+|+|++|++.|++||+++|+++ ..+ .++|.++..+|+|++|+++|+++++
T Consensus 5 ~d~A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~-----~~~---------~nlg~~~~~~~~~~~A~~~~~~al~ 70 (127)
T 4gcn_A 5 TDAAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNI-----TFY---------NNKAAVYFEEKKFAECVQFCEKAVE 70 (127)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH-----HHH---------HHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-----HHH---------HhHHHHHHHhhhHHHHHHHHHHHHH
Confidence 45678999999999999999999999999999999988 333 3699999999999999999999999
Q ss_pred cCCCCH-------HHHHHHHHHHHHcCCHHHHHHHHHhh
Q 026773 201 QNPNDT-------EESIWCFLCEAQLYGVDEARNRFLEA 232 (233)
Q Consensus 201 lnP~d~-------e~~~~~~l~~a~Lg~~dEA~~~~l~~ 232 (233)
++|++. ..+..+|.++..+|++++|+..|.++
T Consensus 71 ~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~ka 109 (127)
T 4gcn_A 71 VGRETRADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRS 109 (127)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hCcccchhhHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 999764 34566778888999999999998764
No 15
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.66 E-value=5.4e-16 Score=127.12 Aligned_cols=104 Identities=3% Similarity=-0.113 Sum_probs=92.0
Q ss_pred HHHhccCcchHHHHHHHHhcccCCCCCHHHHHH----------------HHHHHHHcCCHHHHHHHHHHHHhhCCCCCCC
Q 026773 97 TFTRRLFIPSVSGIWDALTGGNNNSREAVVAIR----------------RGMLLFRQGDVVGSVAEFDKAIELDPRQKIS 160 (233)
Q Consensus 97 ~~~r~~~~~~a~~i~~~~i~~~l~P~~a~Ay~~----------------RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~ 160 (233)
.+-+.+-...|...+.+++ +++|+++++|+. +|.++..+|++++|+..|++|++++|+++
T Consensus 13 ~~~~~g~~~~A~~~~~~al--~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~-- 88 (208)
T 3urz_A 13 AAIEAGQNGQAVSYFRQTI--ALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQKAPNNV-- 88 (208)
T ss_dssp HHHHTTCHHHHHHHHHHHH--HHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH--
T ss_pred HHHHCCCHHHHHHHHHHHH--HhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCH--
Confidence 3445556678899999999 899999999999 99999999999999999999999999988
Q ss_pred ccchhhhhhhhhhhhhhhHHHHHHcCCcHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Q 026773 161 GKGAYRFTISIVGIILKKLIRVSHFNRFEEGAEQFRIDVAQNPNDTEESIWCFLCE 216 (233)
Q Consensus 161 ~~~~y~~~~~~~~a~~~rG~al~~lGryeeAi~~f~kAL~lnP~d~e~~~~~~l~~ 216 (233)
..+. ++|.++..+|++++|++.|+++++++|++++.+..++.++
T Consensus 89 ---~~~~---------~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~ 132 (208)
T 3urz_A 89 ---DCLE---------ACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYY 132 (208)
T ss_dssp ---HHHH---------HHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred ---HHHH---------HHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Confidence 4433 5999999999999999999999999999998877776554
No 16
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=99.65 E-value=1.2e-15 Score=119.18 Aligned_cols=108 Identities=8% Similarity=0.064 Sum_probs=84.7
Q ss_pred hhHHHhccCcchHHHHHHHHhcccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhh
Q 026773 95 APTFTRRLFIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGI 174 (233)
Q Consensus 95 ~~~~~r~~~~~~a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a 174 (233)
...+.+.+-...|...|.+++ +++|+++.+|.++|.++..+|++++|+.+|++|++++|+++ ..++
T Consensus 18 g~~~~~~g~~~~A~~~~~~al--~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~-----~~~~------- 83 (164)
T 3sz7_A 18 GNAAMARKEYSKAIDLYTQAL--SIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYS-----KAWS------- 83 (164)
T ss_dssp HHHHHHTTCHHHHHHHHHHHH--HHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH-----HHHH-------
T ss_pred HHHHHHcCCHHHHHHHHHHHH--HhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCH-----HHHH-------
Confidence 344555666677888888888 78888888888888888888888888888888888888877 3333
Q ss_pred hhhhHHHHHHcCCcHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Q 026773 175 ILKKLIRVSHFNRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQ 218 (233)
Q Consensus 175 ~~~rG~al~~lGryeeAi~~f~kAL~lnP~d~e~~~~~~l~~a~ 218 (233)
++|.++..+|++++|++.|+++++++|++++.++..+++.++
T Consensus 84 --~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~ 125 (164)
T 3sz7_A 84 --RLGLARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRGLETTK 125 (164)
T ss_dssp --HHHHHHHHTTCHHHHHHHHHHHHHHHSSSCCHHHHHHHHHHH
T ss_pred --HHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHH
Confidence 488888888888888888888888888888776666665553
No 17
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.65 E-value=4.7e-16 Score=153.94 Aligned_cols=122 Identities=12% Similarity=0.091 Sum_probs=111.1
Q ss_pred hhHHHhccCcchHHHHHHHHhcccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhh
Q 026773 95 APTFTRRLFIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGI 174 (233)
Q Consensus 95 ~~~~~r~~~~~~a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a 174 (233)
...+.+.+-..+|...|.+++ +++|+++++|+++|.++..+|++++|++.|++||+++|+++ ..+
T Consensus 50 g~~l~~~g~~~eA~~~~~~Al--~l~P~~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l~P~~~-----~a~-------- 114 (723)
T 4gyw_A 50 ASVLQQQGKLQEALMHYKEAI--RISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFA-----DAH-------- 114 (723)
T ss_dssp HHHHHHTTCHHHHHHHHHHHH--HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH-----HHH--------
T ss_pred HHHHHHcCCHHHHHHHHHHHH--HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-----HHH--------
Confidence 345566666788999999999 99999999999999999999999999999999999999988 333
Q ss_pred hhhhHHHHHHcCCcHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhh
Q 026773 175 ILKKLIRVSHFNRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLEA 232 (233)
Q Consensus 175 ~~~rG~al~~lGryeeAi~~f~kAL~lnP~d~e~~~~~~l~~a~Lg~~dEA~~~~l~~ 232 (233)
+++|.++..+|++++|++.|++|++++|++++.+.+++.++..+|++++|.+.+.++
T Consensus 115 -~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~A~~~~~ka 171 (723)
T 4gyw_A 115 -SNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDYDERMKKL 171 (723)
T ss_dssp -HHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTTHHHHHHHH
T ss_pred -HHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHHHHHHHHHH
Confidence 359999999999999999999999999999999999999999999999999988764
No 18
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.65 E-value=2e-15 Score=122.66 Aligned_cols=121 Identities=11% Similarity=-0.012 Sum_probs=108.0
Q ss_pred hHHHhccCcchHHHHHHHHhcccCCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhh
Q 026773 96 PTFTRRLFIPSVSGIWDALTGGNNNS-REAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGI 174 (233)
Q Consensus 96 ~~~~r~~~~~~a~~i~~~~i~~~l~P-~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a 174 (233)
..+-+.+-...|...++.++ +++| .++.+++++|.++..+|++++|+..|++|++++|+++ ..+.
T Consensus 15 ~~~~~~~~~~~A~~~~~~al--~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~-----~~~~------- 80 (228)
T 4i17_A 15 NDALNAKNYAVAFEKYSEYL--KLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLA-----NAYI------- 80 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHH--HHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHH-----HHHH-------
T ss_pred HHHHHccCHHHHHHHHHHHH--hccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchH-----HHHH-------
Confidence 44555566788999999999 8898 9999999999999999999999999999999999877 3333
Q ss_pred hhhhHHHHHHcCCcHHHHHHHHHHHHcCCCCH-------HHHHHHHHHHHHcCCHHHHHHHHHhh
Q 026773 175 ILKKLIRVSHFNRFEEGAEQFRIDVAQNPNDT-------EESIWCFLCEAQLYGVDEARNRFLEA 232 (233)
Q Consensus 175 ~~~rG~al~~lGryeeAi~~f~kAL~lnP~d~-------e~~~~~~l~~a~Lg~~dEA~~~~l~~ 232 (233)
++|.++..+|++++|++.|+++++++|+++ +.+...+.+...+|++++|...+.++
T Consensus 81 --~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~a 143 (228)
T 4i17_A 81 --GKSAAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHA 143 (228)
T ss_dssp --HHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred --HHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHH
Confidence 599999999999999999999999999999 55777888899999999999999875
No 19
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=99.64 E-value=7.1e-16 Score=109.21 Aligned_cols=100 Identities=19% Similarity=0.188 Sum_probs=91.9
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHHHcCCcHHHHHHHHHH
Q 026773 119 NNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSHFNRFEEGAEQFRID 198 (233)
Q Consensus 119 l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~lGryeeAi~~f~kA 198 (233)
++|+++.+|..+|.++...|++++|+..|+++++++|++. ..++ ++|.++..+|++++|++.|+++
T Consensus 1 l~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~-----~~~~---------~~a~~~~~~~~~~~A~~~~~~a 66 (112)
T 2kck_A 1 MVDQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEES-----KYWL---------MKGKALYNLERYEEAVDCYNYV 66 (112)
T ss_dssp CCCSSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCH-----HHHH---------HHHHHHHHTTCHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCH-----HHHH---------HHHHHHHHccCHHHHHHHHHHH
Confidence 4799999999999999999999999999999999999887 3433 5999999999999999999999
Q ss_pred HHcCCC--CHHHHHHHHHHHHHc-CCHHHHHHHHHhh
Q 026773 199 VAQNPN--DTEESIWCFLCEAQL-YGVDEARNRFLEA 232 (233)
Q Consensus 199 L~lnP~--d~e~~~~~~l~~a~L-g~~dEA~~~~l~~ 232 (233)
++++|+ +++.+..++.++..+ |++++|...+.++
T Consensus 67 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~ 103 (112)
T 2kck_A 67 INVIEDEYNKDVWAAKADALRYIEGKEVEAEIAEARA 103 (112)
T ss_dssp HHTSCCTTCHHHHHHHHHHHTTCSSCSHHHHHHHHHH
T ss_pred HHhCcccchHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 999999 999888888899999 9999999998764
No 20
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.64 E-value=1.3e-15 Score=119.75 Aligned_cols=109 Identities=12% Similarity=-0.002 Sum_probs=94.6
Q ss_pred HHHhccCcchHHHHHHHHhcccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhh
Q 026773 97 TFTRRLFIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIIL 176 (233)
Q Consensus 97 ~~~r~~~~~~a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~ 176 (233)
.+.+.+-.+.|...+.+++ +++|+++.+|..+|.++..+|++++|+..|++|++++|+++ ..+.
T Consensus 40 ~y~~~~~~~~A~~~~~~al--~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~-----~~~~--------- 103 (150)
T 4ga2_A 40 LYYEAKEYDLAKKYICTYI--NVQERDPKAHRFLGLLYELEENTDKAVECYRRSVELNPTQK-----DLVL--------- 103 (150)
T ss_dssp HHHHTTCHHHHHHHHHHHH--HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH-----HHHH---------
T ss_pred HHHHcCCHHHHHHHHHHHH--HhCCCCHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCCCH-----HHHH---------
Confidence 3445556688999999999 99999999999999999999999999999999999999998 3433
Q ss_pred hhHHHHHHcCCcHHHHHHH-HHHHHcCCCCHHHHHHHHHHHHHcCC
Q 026773 177 KKLIRVSHFNRFEEGAEQF-RIDVAQNPNDTEESIWCFLCEAQLYG 221 (233)
Q Consensus 177 ~rG~al~~lGryeeAi~~f-~kAL~lnP~d~e~~~~~~l~~a~Lg~ 221 (233)
++|.++..+|++++|++.| +++++++|++++.+..+...+...|+
T Consensus 104 ~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 104 KIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence 5999999999999888775 99999999999987777666666664
No 21
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.64 E-value=4e-16 Score=142.93 Aligned_cols=114 Identities=8% Similarity=0.001 Sum_probs=100.5
Q ss_pred HHHhccC-cchHHHHHHHHhcccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhh
Q 026773 97 TFTRRLF-IPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGII 175 (233)
Q Consensus 97 ~~~r~~~-~~~a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~ 175 (233)
.+.+.+- ...|...+++++ +++|+++.+|++||.++..+|++++|+++|++||++||+++ ..+.
T Consensus 140 ~l~~~g~d~~eAl~~~~~al--~l~P~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~~~-----~a~~-------- 204 (382)
T 2h6f_A 140 LLKSLQKDLHEEMNYITAII--EEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNY-----HAWQ-------- 204 (382)
T ss_dssp HHHHTTCCHHHHHHHHHHHH--HHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCH-----HHHH--------
T ss_pred HHHHcccCHHHHHHHHHHHH--HHCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCccCH-----HHHH--------
Confidence 3344443 678899999999 99999999999999999999999999999999999999998 3333
Q ss_pred hhhHHHHHHcCCcHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHc-CCHHHHH
Q 026773 176 LKKLIRVSHFNRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQL-YGVDEAR 226 (233)
Q Consensus 176 ~~rG~al~~lGryeeAi~~f~kAL~lnP~d~e~~~~~~l~~a~L-g~~dEA~ 226 (233)
++|.++..+|++++|+++|+++|+++|+++..+.+++.++..+ |..++|+
T Consensus 205 -~lg~~~~~~g~~~eAl~~~~~al~l~P~~~~a~~~lg~~l~~l~~~~~eA~ 255 (382)
T 2h6f_A 205 -HRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDRAV 255 (382)
T ss_dssp -HHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCSCSHHH
T ss_pred -HHHHHHHHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCcchHHH
Confidence 5999999999999999999999999999999999999999984 4448884
No 22
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=99.64 E-value=1.9e-15 Score=112.71 Aligned_cols=98 Identities=16% Similarity=0.146 Sum_probs=91.6
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHHHcCCcHHHHHHHHHHHH
Q 026773 121 SREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSHFNRFEEGAEQFRIDVA 200 (233)
Q Consensus 121 P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~lGryeeAi~~f~kAL~ 200 (233)
|.++++|..+|..++..|++++|++.|++|++++|+++ ..+. ++|.++..+|++++|+++|+++++
T Consensus 1 p~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~-----~~~~---------~~a~~~~~~~~~~~A~~~~~~al~ 66 (126)
T 3upv_A 1 SMKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDA-----RGYS---------NRAAALAKLMSFPEAIADCNKAIE 66 (126)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH-----HHHH---------HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCh-----HHHH---------HHHHHHHHhcCHHHHHHHHHHHHH
Confidence 56789999999999999999999999999999999988 3433 599999999999999999999999
Q ss_pred cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhh
Q 026773 201 QNPNDTEESIWCFLCEAQLYGVDEARNRFLEA 232 (233)
Q Consensus 201 lnP~d~e~~~~~~l~~a~Lg~~dEA~~~~l~~ 232 (233)
++|+++..+..++.++..+|++++|...+.++
T Consensus 67 ~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~a 98 (126)
T 3upv_A 67 KDPNFVRAYIRKATAQIAVKEYASALETLDAA 98 (126)
T ss_dssp HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHH
Confidence 99999999999999999999999999998764
No 23
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=99.63 E-value=4.1e-15 Score=112.87 Aligned_cols=121 Identities=12% Similarity=0.139 Sum_probs=105.4
Q ss_pred hHHHhccCcchHHHHHHHHhcccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhh
Q 026773 96 PTFTRRLFIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGII 175 (233)
Q Consensus 96 ~~~~r~~~~~~a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~ 175 (233)
..+-+.+-...|...+..++ +++|+++.+|..+|.++..+|++++|+..|+++++++|+++ ..++
T Consensus 21 ~~~~~~~~~~~A~~~~~~al--~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~-----~~~~-------- 85 (166)
T 1a17_A 21 NDYFKAKDYENAIKFYSQAI--ELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYI-----KGYY-------- 85 (166)
T ss_dssp HHHHHTTCHHHHHHHHHHHH--HHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH-----HHHH--------
T ss_pred HHHHHccCHHHHHHHHHHHH--HhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccH-----HHHH--------
Confidence 34445556678899999998 88999999999999999999999999999999999999887 3433
Q ss_pred hhhHHHHHHcCCcHHHHHHHHHHHHcCCCCHHHHHHHHHH--HHHcCCHHHHHHHHHhh
Q 026773 176 LKKLIRVSHFNRFEEGAEQFRIDVAQNPNDTEESIWCFLC--EAQLYGVDEARNRFLEA 232 (233)
Q Consensus 176 ~~rG~al~~lGryeeAi~~f~kAL~lnP~d~e~~~~~~l~--~a~Lg~~dEA~~~~l~~ 232 (233)
++|.++..+|++++|++.|+++++++|++.+.+.+.+.+ ....|++++|...+.++
T Consensus 86 -~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 143 (166)
T 1a17_A 86 -RRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHK 143 (166)
T ss_dssp -HHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccch
Confidence 599999999999999999999999999999887666666 66789999999988764
No 24
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.62 E-value=1.7e-15 Score=121.90 Aligned_cols=120 Identities=11% Similarity=0.010 Sum_probs=97.7
Q ss_pred hhccCCcchhhccccccccccccccccchhHHHhccCcchHHHHHHHHhcccCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 026773 67 LTSKAPLSVQTHINSLFSTPRGHYLQNRAPTFTRRLFIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAE 146 (233)
Q Consensus 67 ~~~~~~~~~~~~~n~~~~~~~~h~~~~~~~~~~r~~~~~~a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~lGdyeeAIad 146 (233)
+.+...+.....++|....... +....+-+.+-..+|...|..++ +++|+++.+|.++|.++..+|+|++|++.
T Consensus 19 ~~~~~~l~~al~l~p~~~~~~~----~lg~~~~~~g~~~eA~~~~~~al--~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~ 92 (151)
T 3gyz_A 19 INSGATLKDINAIPDDMMDDIY----SYAYDFYNKGRIEEAEVFFRFLC--IYDFYNVDYIMGLAAIYQIKEQFQQAADL 92 (151)
T ss_dssp HHTSCCTGGGCCSCHHHHHHHH----HHHHHHHHTTCHHHHHHHHHHHH--HHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHCCCCHHHHhCCCHHHHHHHH----HHHHHHHHcCCHHHHHHHHHHHH--HhCCCCHHHHHHHHHHHHHHccHHHHHHH
Confidence 3444555555556655433222 23345556667788999999999 99999999999999999999999999999
Q ss_pred HHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHHHcCCcHHHHHHHHHHHHcCCCCH
Q 026773 147 FDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSHFNRFEEGAEQFRIDVAQNPNDT 206 (233)
Q Consensus 147 fdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~lGryeeAi~~f~kAL~lnP~d~ 206 (233)
|++|++++|+++ ..++ ++|.++..+|++++|++.|+++++++|+.+
T Consensus 93 ~~~al~l~P~~~-----~~~~---------~lg~~~~~lg~~~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 93 YAVAFALGKNDY-----TPVF---------HTGQCQLRLKAPLKAKECFELVIQHSNDEK 138 (151)
T ss_dssp HHHHHHHSSSCC-----HHHH---------HHHHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred HHHHHhhCCCCc-----HHHH---------HHHHHHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence 999999999999 4444 599999999999999999999999999865
No 25
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=99.62 E-value=1.9e-15 Score=125.84 Aligned_cols=108 Identities=14% Similarity=0.033 Sum_probs=90.9
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHHHcCCcHHHHHHHHHHHHc-
Q 026773 123 EAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSHFNRFEEGAEQFRIDVAQ- 201 (233)
Q Consensus 123 ~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~lGryeeAi~~f~kAL~l- 201 (233)
.+..+.++|..++..|+|++|++.|++||+++|+++. .+ .......-..+|.|+|.++..+|+|++|+++|++||++
T Consensus 10 ~a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~-~~-a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~ 87 (159)
T 2hr2_A 10 GAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPP-EE-AFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYF 87 (159)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCT-TS-CCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcc-hh-hhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhh
Confidence 3678899999999999999999999999999999641 00 00000000226678999999999999999999999999
Q ss_pred ------CCCCHHHH----HHHHHHHHHcCCHHHHHHHHHhh
Q 026773 202 ------NPNDTEES----IWCFLCEAQLYGVDEARNRFLEA 232 (233)
Q Consensus 202 ------nP~d~e~~----~~~~l~~a~Lg~~dEA~~~~l~~ 232 (233)
+|+++..| +.++.++..+|+++||+..|.++
T Consensus 88 n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kA 128 (159)
T 2hr2_A 88 NRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKV 128 (159)
T ss_dssp HHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHH
Confidence 99999999 99999999999999999999875
No 26
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=99.62 E-value=4.1e-15 Score=116.64 Aligned_cols=116 Identities=9% Similarity=-0.014 Sum_probs=102.8
Q ss_pred ccCcchHHHHHHHHhcccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHH
Q 026773 101 RLFIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLI 180 (233)
Q Consensus 101 ~~~~~~a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~ 180 (233)
.+-...|...+..++ +.+|+++.+|..+|.++...|++++|+..|+++++++|+++ ..+. ++|.
T Consensus 23 ~~~~~~A~~~~~~al--~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~-----~~~~---------~la~ 86 (177)
T 2e2e_A 23 QQNPEAQLQALQDKI--RANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENA-----ELYA---------ALAT 86 (177)
T ss_dssp ----CCCCHHHHHHH--HHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCH-----HHHH---------HHHH
T ss_pred ccCHHHHHHHHHHHH--HhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH-----HHHH---------HHHH
Confidence 344466888888888 88999999999999999999999999999999999999987 3433 5999
Q ss_pred H-HHHcCCc--HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhh
Q 026773 181 R-VSHFNRF--EEGAEQFRIDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLEA 232 (233)
Q Consensus 181 a-l~~lGry--eeAi~~f~kAL~lnP~d~e~~~~~~l~~a~Lg~~dEA~~~~l~~ 232 (233)
+ +...|++ ++|++.|+++++++|++++.+...+.++..+|++++|...+.++
T Consensus 87 ~l~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 141 (177)
T 2e2e_A 87 VLYYQASQHMTAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKV 141 (177)
T ss_dssp HHHHHTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHhcCCcchHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 9 7799999 99999999999999999999899999999999999999998764
No 27
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=99.62 E-value=2e-15 Score=116.15 Aligned_cols=109 Identities=11% Similarity=0.017 Sum_probs=94.5
Q ss_pred hHHHhccCcchHHHHHHHHhcccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhh
Q 026773 96 PTFTRRLFIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGII 175 (233)
Q Consensus 96 ~~~~r~~~~~~a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~ 175 (233)
..+.+.+-..+|...+..++ +++|+++.+|..+|.++..+|++++|+..|++|++++|+++ ..++
T Consensus 26 ~~~~~~g~~~~A~~~~~~al--~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~-----~~~~-------- 90 (142)
T 2xcb_A 26 FNQYQAGKWDDAQKIFQALC--MLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEP-----RFPF-------- 90 (142)
T ss_dssp HHHHHTTCHHHHHHHHHHHH--HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCT-----HHHH--------
T ss_pred HHHHHHccHHHHHHHHHHHH--HhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCc-----HHHH--------
Confidence 44555666778999999999 89999999999999999999999999999999999999998 4444
Q ss_pred hhhHHHHHHcCCcHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcC
Q 026773 176 LKKLIRVSHFNRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQLY 220 (233)
Q Consensus 176 ~~rG~al~~lGryeeAi~~f~kAL~lnP~d~e~~~~~~l~~a~Lg 220 (233)
++|.++..+|++++|++.|+++++++|++++...+...+...++
T Consensus 91 -~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~l~ 134 (142)
T 2xcb_A 91 -HAAECHLQLGDLDGAESGFYSARALAAAQPAHEALAARAGAMLE 134 (142)
T ss_dssp -HHHHHHHHTTCHHHHHHHHHHHHHHHHTCGGGHHHHHHHHHHHH
T ss_pred -HHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHH
Confidence 49999999999999999999999999999876666555555444
No 28
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=99.62 E-value=2.6e-15 Score=117.34 Aligned_cols=101 Identities=12% Similarity=0.143 Sum_probs=93.7
Q ss_pred cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHHHcCCcHHHHHHHHH
Q 026773 118 NNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSHFNRFEEGAEQFRI 197 (233)
Q Consensus 118 ~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~lGryeeAi~~f~k 197 (233)
..++.++.+|..+|.+++..|++++|++.|++|++++|+++ ..+. ++|.++..+|++++|+++|++
T Consensus 5 ~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~-----~~~~---------~l~~~~~~~g~~~~A~~~~~~ 70 (164)
T 3sz7_A 5 MAPTPESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANP-----IYLS---------NRAAAYSASGQHEKAAEDAEL 70 (164)
T ss_dssp SSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCH-----HHHH---------HHHHHHHHTTCHHHHHHHHHH
T ss_pred chhhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCH-----HHHH---------HHHHHHHHccCHHHHHHHHHH
Confidence 45678899999999999999999999999999999999988 3433 599999999999999999999
Q ss_pred HHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhh
Q 026773 198 DVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLEA 232 (233)
Q Consensus 198 AL~lnP~d~e~~~~~~l~~a~Lg~~dEA~~~~l~~ 232 (233)
+++++|+++..+..++.++..+|++++|...|.++
T Consensus 71 al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 105 (164)
T 3sz7_A 71 ATVVDPKYSKAWSRLGLARFDMADYKGAKEAYEKG 105 (164)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 99999999999999999999999999999998764
No 29
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.61 E-value=4.2e-15 Score=120.72 Aligned_cols=118 Identities=10% Similarity=-0.032 Sum_probs=103.1
Q ss_pred hHHHhccCcchHHHHHHHHhcccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhh
Q 026773 96 PTFTRRLFIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGII 175 (233)
Q Consensus 96 ~~~~r~~~~~~a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~ 175 (233)
..+.+.+-...|...+..++ +++|+++.+|..+|.++..+|++++|++.|+++++++|+++ .. + ...+.++
T Consensus 50 ~~~~~~~~~~~A~~~~~~al--~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~-----~~-~-~~~~~~~ 120 (228)
T 4i17_A 50 VCADNIKKYKEAADYFDIAI--KKNYNLANAYIGKSAAYRDMKNNQEYIATLTEGIKAVPGNA-----TI-E-KLYAIYY 120 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHH--HTTCSHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCH-----HH-H-HHHHHHH
T ss_pred HHHHHhhcHHHHHHHHHHHH--HhCcchHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcH-----HH-H-HHHHHHH
Confidence 34444555678889999999 99999999999999999999999999999999999999987 22 2 1345677
Q ss_pred hhhHHHHHHcCCcHHHHHHHHHHHHcCCC--CHHHHHHHHHHHHHcCCH
Q 026773 176 LKKLIRVSHFNRFEEGAEQFRIDVAQNPN--DTEESIWCFLCEAQLYGV 222 (233)
Q Consensus 176 ~~rG~al~~lGryeeAi~~f~kAL~lnP~--d~e~~~~~~l~~a~Lg~~ 222 (233)
.++|.++..+|++++|++.|+++++++|+ +++.+..++.++..+|+.
T Consensus 121 ~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~~ 169 (228)
T 4i17_A 121 LKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGVLFYNNGAD 169 (228)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHHHH
Confidence 88999999999999999999999999999 889888899888888877
No 30
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=99.61 E-value=3.1e-15 Score=117.74 Aligned_cols=105 Identities=9% Similarity=0.028 Sum_probs=91.6
Q ss_pred hHHHhccCcchHHHHHHHHhcccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhh
Q 026773 96 PTFTRRLFIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGII 175 (233)
Q Consensus 96 ~~~~r~~~~~~a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~ 175 (233)
..+.+.+-..+|...+..++ +++|+++.+|..+|.++..+|++++|++.|++|++++|+++ ..++
T Consensus 29 ~~~~~~g~~~~A~~~~~~al--~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~-----~~~~-------- 93 (148)
T 2vgx_A 29 FNQYQSGXYEDAHXVFQALC--VLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEP-----RFPF-------- 93 (148)
T ss_dssp HHHHHTTCHHHHHHHHHHHH--HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCT-----HHHH--------
T ss_pred HHHHHcCChHHHHHHHHHHH--HcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCc-----hHHH--------
Confidence 44555666778999999999 89999999999999999999999999999999999999998 4444
Q ss_pred hhhHHHHHHcCCcHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Q 026773 176 LKKLIRVSHFNRFEEGAEQFRIDVAQNPNDTEESIWCFLCE 216 (233)
Q Consensus 176 ~~rG~al~~lGryeeAi~~f~kAL~lnP~d~e~~~~~~l~~ 216 (233)
++|.++..+|++++|++.|+++++++|++++...+...+.
T Consensus 94 -~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 133 (148)
T 2vgx_A 94 -HAAECLLQXGELAEAESGLFLAQELIANXPEFXELSTRVS 133 (148)
T ss_dssp -HHHHHHHHTTCHHHHHHHHHHHHHHHTTCGGGHHHHHHHH
T ss_pred -HHHHHHHHcCCHHHHHHHHHHHHHHCcCCCcchHHHHHHH
Confidence 4999999999999999999999999999887655544443
No 31
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=99.58 E-value=5.3e-15 Score=113.40 Aligned_cols=101 Identities=11% Similarity=0.081 Sum_probs=88.3
Q ss_pred HHHhccCcchHHHHHHHHhcccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhh
Q 026773 97 TFTRRLFIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIIL 176 (233)
Q Consensus 97 ~~~r~~~~~~a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~ 176 (233)
.+-+.+-..+|...|++++ +++|+++.+|.++|.++..+|+|++|+++|++||+++|++. ..+. .++.++.
T Consensus 17 ~~~~~~~~~~A~~~y~~Al--~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~-----~~~~--~~a~~~~ 87 (127)
T 4gcn_A 17 AAYKQKDFEKAHVHYDKAI--ELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETR-----ADYK--LIAKAMS 87 (127)
T ss_dssp HHHHTTCHHHHHHHHHHHH--HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT-----CCHH--HHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHH--HhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccc-----hhhH--HHHHHHH
Confidence 3455566788999999999 99999999999999999999999999999999999999887 2222 2456788
Q ss_pred hhHHHHHHcCCcHHHHHHHHHHHHcCCCCHH
Q 026773 177 KKLIRVSHFNRFEEGAEQFRIDVAQNPNDTE 207 (233)
Q Consensus 177 ~rG~al~~lGryeeAi~~f~kAL~lnP~d~e 207 (233)
++|.++..+|++++|++.|+++++.+|+ ++
T Consensus 88 ~lg~~~~~~~~~~~A~~~~~kal~~~~~-~~ 117 (127)
T 4gcn_A 88 RAGNAFQKQNDLSLAVQWFHRSLSEFRD-PE 117 (127)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSCC-HH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCcC-HH
Confidence 9999999999999999999999999985 54
No 32
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=99.58 E-value=9.6e-15 Score=111.33 Aligned_cols=90 Identities=10% Similarity=0.077 Sum_probs=41.0
Q ss_pred hccCcchHHHHHHHHhcccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhH
Q 026773 100 RRLFIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKL 179 (233)
Q Consensus 100 r~~~~~~a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG 179 (233)
+.+-..+|...+..++ +++|+++.+|+.+|.++..+|++++|+..|++|++++|+++ ..++ ++|
T Consensus 29 ~~g~~~~A~~~~~~al--~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~-----~~~~---------~la 92 (121)
T 1hxi_A 29 KLANLAEAALAFEAVC--QKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDI-----AVHA---------ALA 92 (121)
T ss_dssp HTTCHHHHHHHHHHHH--HHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH-----HHHH---------HHH
T ss_pred HcCCHHHHHHHHHHHH--HHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-----HHHH---------HHH
Confidence 3333444444444444 44555555555555555555555555555555555555444 2222 245
Q ss_pred HHHHHcCCcHHHHHHHHHHHHcCCCC
Q 026773 180 IRVSHFNRFEEGAEQFRIDVAQNPND 205 (233)
Q Consensus 180 ~al~~lGryeeAi~~f~kAL~lnP~d 205 (233)
.++..+|++++|++.|+++++++|++
T Consensus 93 ~~~~~~g~~~~A~~~~~~al~~~P~~ 118 (121)
T 1hxi_A 93 VSHTNEHNANAALASLRAWLLSQPQY 118 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHHHC-----
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCcCC
Confidence 55555555555555555555555543
No 33
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.58 E-value=1.8e-14 Score=115.68 Aligned_cols=113 Identities=15% Similarity=0.101 Sum_probs=101.9
Q ss_pred cchHHHHHHHHhcccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHH
Q 026773 104 IPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVS 183 (233)
Q Consensus 104 ~~~a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~ 183 (233)
...+...+..++ +.+|+++.++..+|.++...|++++|++.|+++++++|+++ ..+. ++|.++.
T Consensus 121 ~~~a~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~-----~~~~---------~l~~~~~ 184 (258)
T 3uq3_A 121 AEKELKKAEAEA--YVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDA-----RGYS---------NRAAALA 184 (258)
T ss_dssp HHHHHHHHHHHH--HCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH-----HHHH---------HHHHHHH
T ss_pred HHHHHHHHHHHH--HcCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcccH-----HHHH---------HHHHHHH
Confidence 345666666666 68999999999999999999999999999999999999987 3433 5999999
Q ss_pred HcCCcHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhh
Q 026773 184 HFNRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLEA 232 (233)
Q Consensus 184 ~lGryeeAi~~f~kAL~lnP~d~e~~~~~~l~~a~Lg~~dEA~~~~l~~ 232 (233)
.+|++++|++.|+++++++|++++.+..++.++..+|++++|...+.++
T Consensus 185 ~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 233 (258)
T 3uq3_A 185 KLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAA 233 (258)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999998764
No 34
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.58 E-value=3.3e-14 Score=118.24 Aligned_cols=124 Identities=8% Similarity=0.020 Sum_probs=108.4
Q ss_pred hHHHhccCcchHHHHHHHHhcccCCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhh
Q 026773 96 PTFTRRLFIPSVSGIWDALTGGNNNSRE---AVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIV 172 (233)
Q Consensus 96 ~~~~r~~~~~~a~~i~~~~i~~~l~P~~---a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~ 172 (233)
..+-+.+-...|...+..++ +.+|++ +.+++.+|.+++.+|++++|+..|+++++++|+++ .. .
T Consensus 23 ~~~~~~g~~~~A~~~~~~~l--~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~-----~~------~ 89 (261)
T 3qky_A 23 MEFYNQGKYDRAIEYFKAVF--TYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDP-----RV------P 89 (261)
T ss_dssp HHHHHTTCHHHHHHHHHHHG--GGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCT-----TH------H
T ss_pred HHHHHhCCHHHHHHHHHHHH--HhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCc-----hh------H
Confidence 44555566788999999999 889999 99999999999999999999999999999999876 11 1
Q ss_pred hhhhhhHHHHHH--------cCCcHHHHHHHHHHHHcCCCCHHHH-----------------HHHHHHHHHcCCHHHHHH
Q 026773 173 GIILKKLIRVSH--------FNRFEEGAEQFRIDVAQNPNDTEES-----------------IWCFLCEAQLYGVDEARN 227 (233)
Q Consensus 173 ~a~~~rG~al~~--------lGryeeAi~~f~kAL~lnP~d~e~~-----------------~~~~l~~a~Lg~~dEA~~ 227 (233)
.+++.+|.+++. +|++++|++.|+++++.+|+++... ++.+.++..+|++++|+.
T Consensus 90 ~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 169 (261)
T 3qky_A 90 QAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAV 169 (261)
T ss_dssp HHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHH
Confidence 245679999999 9999999999999999999987665 677888999999999999
Q ss_pred HHHhh
Q 026773 228 RFLEA 232 (233)
Q Consensus 228 ~~l~~ 232 (233)
.|.++
T Consensus 170 ~~~~~ 174 (261)
T 3qky_A 170 TYEAV 174 (261)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 98764
No 35
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.58 E-value=6.7e-14 Score=100.49 Aligned_cols=119 Identities=18% Similarity=0.180 Sum_probs=106.1
Q ss_pred HHhccCcchHHHHHHHHhcccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhh
Q 026773 98 FTRRLFIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILK 177 (233)
Q Consensus 98 ~~r~~~~~~a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~ 177 (233)
+.+.+-..+|...+..++ +.+|+++.++..+|.++...|++++|+..|+++++++|+++ ..+. .
T Consensus 11 ~~~~~~~~~A~~~~~~~~--~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~-----~~~~---------~ 74 (136)
T 2fo7_A 11 YYKQGDYDEAIEYYQKAL--ELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSA-----EAWY---------N 74 (136)
T ss_dssp HHHHTCHHHHHHHHHHHH--HHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCH-----HHHH---------H
T ss_pred HHHcCcHHHHHHHHHHHH--HcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCch-----HHHH---------H
Confidence 444455678888999888 78999999999999999999999999999999999999877 3333 5
Q ss_pred hHHHHHHcCCcHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhh
Q 026773 178 KLIRVSHFNRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLEA 232 (233)
Q Consensus 178 rG~al~~lGryeeAi~~f~kAL~lnP~d~e~~~~~~l~~a~Lg~~dEA~~~~l~~ 232 (233)
+|.++...|++++|++.++++++.+|++++.+...+.++...|++++|...+.++
T Consensus 75 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~ 129 (136)
T 2fo7_A 75 LGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKA 129 (136)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHH
Confidence 8999999999999999999999999999988888888899999999999988764
No 36
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=99.58 E-value=2.4e-14 Score=104.47 Aligned_cols=110 Identities=10% Similarity=0.125 Sum_probs=92.9
Q ss_pred hHHHhccCcchHHHHHHHHhcccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhh
Q 026773 96 PTFTRRLFIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGII 175 (233)
Q Consensus 96 ~~~~r~~~~~~a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~ 175 (233)
..+.+.+-...|...+.+++ +.+|+++.++..+|.++..+|++++|+..|+++++++|+++ ..++
T Consensus 24 ~~~~~~~~~~~A~~~~~~al--~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~-----~~~~-------- 88 (133)
T 2lni_A 24 NECFQKGDYPQAMKHYTEAI--KRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFI-----KGYT-------- 88 (133)
T ss_dssp HHHHHTTCSHHHHHHHHHHH--TTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCH-----HHHH--------
T ss_pred HHHHHcCCHHHHHHHHHHHH--HcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCch-----HHHH--------
Confidence 44555566677888999988 88999999999999999999999999999999999999877 3333
Q ss_pred hhhHHHHHHcCCcHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCC
Q 026773 176 LKKLIRVSHFNRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQLYG 221 (233)
Q Consensus 176 ~~rG~al~~lGryeeAi~~f~kAL~lnP~d~e~~~~~~l~~a~Lg~ 221 (233)
++|.++..+|++++|++.|+++++++|++.+.+.+.+.++..+|+
T Consensus 89 -~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 89 -RKAAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp -HHHHHHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred -HHHHHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence 589999999999999999999999999988887777777776653
No 37
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.57 E-value=7e-15 Score=142.46 Aligned_cols=116 Identities=10% Similarity=-0.001 Sum_probs=105.1
Q ss_pred hccCcchHHHHHHHHhcccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhH
Q 026773 100 RRLFIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKL 179 (233)
Q Consensus 100 r~~~~~~a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG 179 (233)
+.+-..+|...+++++ +++|+++.+|+++|.++..+|++++|+++|++|++++|+++ ..++ ++|
T Consensus 445 ~~g~~~~A~~~~~~al--~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~-----~~~~---------~lg 508 (681)
T 2pzi_A 445 DLGDVAKATRKLDDLA--ERVGWRWRLVWYRAVAELLTGDYDSATKHFTEVLDTFPGEL-----APKL---------ALA 508 (681)
T ss_dssp HHTCHHHHHHHHHHHH--HHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCS-----HHHH---------HHH
T ss_pred hcCCHHHHHHHHHHHh--ccCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh-----HHHH---------HHH
Confidence 3344566777788888 89999999999999999999999999999999999999998 4433 599
Q ss_pred HHHHHcCCcHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhh
Q 026773 180 IRVSHFNRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLEA 232 (233)
Q Consensus 180 ~al~~lGryeeAi~~f~kAL~lnP~d~e~~~~~~l~~a~Lg~~dEA~~~~l~~ 232 (233)
.++..+|++++ ++.|+++++++|++++.+.+++.++..+|++++|...+.++
T Consensus 509 ~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a 560 (681)
T 2pzi_A 509 ATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRTLDEV 560 (681)
T ss_dssp HHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHTS
T ss_pred HHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHHHhh
Confidence 99999999999 99999999999999999999999999999999999999875
No 38
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=99.57 E-value=2.4e-15 Score=117.26 Aligned_cols=107 Identities=6% Similarity=0.061 Sum_probs=89.1
Q ss_pred hHHHhccCcchHHHHHHHHhcccC------------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 026773 96 PTFTRRLFIPSVSGIWDALTGGNN------------------NSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQ 157 (233)
Q Consensus 96 ~~~~r~~~~~~a~~i~~~~i~~~l------------------~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~ 157 (233)
..+-+.+-+..|...|..++ ++ +|.++.+|.++|.++..+|++++|+.++++||+++|++
T Consensus 19 ~~~~~~~~~~~A~~~y~~al--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~ 96 (162)
T 3rkv_A 19 NELFVQKDYKEAIDAYRDAL--TRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKREETN 96 (162)
T ss_dssp HHHHHTTCHHHHHHHHHHHH--HHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTC
T ss_pred HHHHHcCCHHHHHHHHHHHH--HHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcc
Confidence 44555666677888888888 55 77888999999999999999999999999999999998
Q ss_pred CCCccchhhhhhhhhhhhhhhHHHHHHcCCcHHHHHHHHHHHHcCCCCHH-HHHHHHHHHHH
Q 026773 158 KISGKGAYRFTISIVGIILKKLIRVSHFNRFEEGAEQFRIDVAQNPNDTE-ESIWCFLCEAQ 218 (233)
Q Consensus 158 ~~~~~~~y~~~~~~~~a~~~rG~al~~lGryeeAi~~f~kAL~lnP~d~e-~~~~~~l~~a~ 218 (233)
+ ..++ ++|.++..+|++++|+++|+++++++|++++ ....+..|...
T Consensus 97 ~-----~a~~---------~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~~ 144 (162)
T 3rkv_A 97 E-----KALF---------RRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIVTER 144 (162)
T ss_dssp H-----HHHH---------HHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHH
T ss_pred h-----HHHH---------HHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH
Confidence 8 4444 4999999999999999999999999999984 33344444443
No 39
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.57 E-value=4.3e-14 Score=112.62 Aligned_cols=117 Identities=9% Similarity=0.080 Sum_probs=100.8
Q ss_pred HHHhccCcchHHHHHHHHhcccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhh
Q 026773 97 TFTRRLFIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIIL 176 (233)
Q Consensus 97 ~~~r~~~~~~a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~ 176 (233)
.+.+.+-...|...+..++ +| ++.+|.++|.++..+|++++|++.|++|++++|+++ ..+.
T Consensus 15 ~~~~~~~~~~A~~~~~~a~----~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~-----~~~~--------- 75 (213)
T 1hh8_A 15 LAADKKDWKGALDAFSAVQ----DP-HSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLA-----VAYF--------- 75 (213)
T ss_dssp HHHHTTCHHHHHHHHHTSS----SC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH-----HHHH---------
T ss_pred HHHHhCCHHHHHHHHHHHc----CC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccch-----HHHH---------
Confidence 3344455566777777664 33 899999999999999999999999999999999887 3433
Q ss_pred hhHHHHHHcCCcHHHHHHHHHHHHcCCCCH----------------HHHHHHHHHHHHcCCHHHHHHHHHhh
Q 026773 177 KKLIRVSHFNRFEEGAEQFRIDVAQNPNDT----------------EESIWCFLCEAQLYGVDEARNRFLEA 232 (233)
Q Consensus 177 ~rG~al~~lGryeeAi~~f~kAL~lnP~d~----------------e~~~~~~l~~a~Lg~~dEA~~~~l~~ 232 (233)
++|.++..+|++++|++.|++++++.|++. +.+..++.++..+|++++|...+.++
T Consensus 76 ~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 147 (213)
T 1hh8_A 76 QRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALA 147 (213)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 599999999999999999999999998877 88888999999999999999998764
No 40
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.57 E-value=7.1e-14 Score=106.17 Aligned_cols=120 Identities=18% Similarity=0.219 Sum_probs=106.8
Q ss_pred HHHhccCcchHHHHHHHHhcccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhh
Q 026773 97 TFTRRLFIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIIL 176 (233)
Q Consensus 97 ~~~r~~~~~~a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~ 176 (233)
.+.+.+-...|...+..++ +++|+++.++..+|.++...|++++|++.|+++++++|+++ ..+.
T Consensus 51 ~~~~~~~~~~A~~~~~~~~--~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~-----~~~~--------- 114 (186)
T 3as5_A 51 AYVKTGAVDRGTELLERSL--ADAPDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINF-----NVRF--------- 114 (186)
T ss_dssp HHHHTTCHHHHHHHHHHHH--HHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCH-----HHHH---------
T ss_pred HHHHcCCHHHHHHHHHHHH--hcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcHhH-----HHHH---------
Confidence 3344455677888999988 88999999999999999999999999999999999999887 3333
Q ss_pred hhHHHHHHcCCcHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhh
Q 026773 177 KKLIRVSHFNRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLEA 232 (233)
Q Consensus 177 ~rG~al~~lGryeeAi~~f~kAL~lnP~d~e~~~~~~l~~a~Lg~~dEA~~~~l~~ 232 (233)
.+|.++...|++++|++.++++++.+|+++..+...+.+...+|++++|...+.++
T Consensus 115 ~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~ 170 (186)
T 3as5_A 115 RLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFKKA 170 (186)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 59999999999999999999999999999998888999999999999999988764
No 41
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=99.57 E-value=3.4e-14 Score=102.46 Aligned_cols=110 Identities=15% Similarity=0.182 Sum_probs=94.7
Q ss_pred HHHhccCcchHHHHHHHHhcccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhh
Q 026773 97 TFTRRLFIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIIL 176 (233)
Q Consensus 97 ~~~r~~~~~~a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~ 176 (233)
.+.+.+-...|...+..++ +++|+++.++..+|.++...|++++|+..++++++++|+++ ..++
T Consensus 21 ~~~~~~~~~~A~~~~~~~~--~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~-----~~~~--------- 84 (131)
T 2vyi_A 21 EQMKVENFEAAVHFYGKAI--ELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYS-----KAYG--------- 84 (131)
T ss_dssp HHHHTTCHHHHHHHHHHHH--HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH-----HHHH---------
T ss_pred HHHHccCHHHHHHHHHHHH--HcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCH-----HHHH---------
Confidence 3344455677888999888 88999999999999999999999999999999999999887 3433
Q ss_pred hhHHHHHHcCCcHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCH
Q 026773 177 KKLIRVSHFNRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQLYGV 222 (233)
Q Consensus 177 ~rG~al~~lGryeeAi~~f~kAL~lnP~d~e~~~~~~l~~a~Lg~~ 222 (233)
.+|.++..+|++++|++.|+++++++|+++..+...+.+...+|++
T Consensus 85 ~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 85 RMGLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcC
Confidence 4999999999999999999999999999998888888888877764
No 42
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=99.57 E-value=2.4e-14 Score=104.53 Aligned_cols=101 Identities=13% Similarity=0.164 Sum_probs=93.0
Q ss_pred cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHHHcCCcHHHHHHHHH
Q 026773 118 NNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSHFNRFEEGAEQFRI 197 (233)
Q Consensus 118 ~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~lGryeeAi~~f~k 197 (233)
...|.++.+|..+|.++...|++++|++.|+++++++|++. ..+. ++|.++...|++++|++.|++
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~-----~~~~---------~la~~~~~~~~~~~A~~~~~~ 75 (133)
T 2lni_A 10 HMNPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDA-----KLYS---------NRAACYTKLLEFQLALKDCEE 75 (133)
T ss_dssp CSSSCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCH-----HHHH---------HHHHHHTTTTCHHHHHHHHHH
T ss_pred CcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcH-----HHHH---------HHHHHHHHhccHHHHHHHHHH
Confidence 35688999999999999999999999999999999999887 3333 599999999999999999999
Q ss_pred HHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhh
Q 026773 198 DVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLEA 232 (233)
Q Consensus 198 AL~lnP~d~e~~~~~~l~~a~Lg~~dEA~~~~l~~ 232 (233)
+++++|+++..+..++.++..+|++++|...+.++
T Consensus 76 a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~ 110 (133)
T 2lni_A 76 CIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKA 110 (133)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHhCCCchHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 99999999999899999999999999999998764
No 43
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.57 E-value=4.6e-14 Score=115.53 Aligned_cols=124 Identities=5% Similarity=-0.087 Sum_probs=104.0
Q ss_pred hHHHhccCcchHHHHHHHHhcccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhh
Q 026773 96 PTFTRRLFIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGII 175 (233)
Q Consensus 96 ~~~~r~~~~~~a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~ 175 (233)
..+-+.+-...|...+..++ +++|+++.++..+|.++..+|++++|+..|+++++ .|.++ ... ..++
T Consensus 11 ~~~~~~~~~~~A~~~~~~~l--~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~-~~~~~-----~~~-----~~~~ 77 (272)
T 3u4t_A 11 DFLFKNNNYAEAIEVFNKLE--AKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFS-KVNAT-----KAK-----SADF 77 (272)
T ss_dssp HHHHTTTCHHHHHHHHHHHH--HTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHT-TSCTT-----TCC-----HHHH
T ss_pred HHHHHhcCHHHHHHHHHHHH--HhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHh-ccCch-----hHH-----HHHH
Confidence 34445556677888999998 88999999999999999999999999999999999 66555 221 1234
Q ss_pred hhhHHHHHHcCCcHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhh
Q 026773 176 LKKLIRVSHFNRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLEA 232 (233)
Q Consensus 176 ~~rG~al~~lGryeeAi~~f~kAL~lnP~d~e~~~~~~l~~a~Lg~~dEA~~~~l~~ 232 (233)
.++|.++..+|++++|++.|+++++++|++++.+..++.++..+|++++|...+.++
T Consensus 78 ~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 134 (272)
T 3u4t_A 78 EYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQ 134 (272)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGG
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 569999999999999999999999999999988888888999999999999988765
No 44
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=99.56 E-value=2.2e-14 Score=127.10 Aligned_cols=115 Identities=12% Similarity=0.112 Sum_probs=102.9
Q ss_pred HHHhccCcchHHHHHHHHhcccCCCCC---------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCc
Q 026773 97 TFTRRLFIPSVSGIWDALTGGNNNSRE---------------AVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISG 161 (233)
Q Consensus 97 ~~~r~~~~~~a~~i~~~~i~~~l~P~~---------------a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~ 161 (233)
.+.+.+-...|...|.+++ +++|++ +.+|.++|.++..+|++++|++.|++||+++|+++
T Consensus 156 ~~~~~g~~~~A~~~y~~Al--~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~--- 230 (336)
T 1p5q_A 156 VYFKEGKYKQALLQYKKIV--SWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDSNNE--- 230 (336)
T ss_dssp HHHHHTCHHHHHHHHHHHH--HHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH---
T ss_pred HHHHCCCHHHHHHHHHHHH--HHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH---
Confidence 3445556677888898888 889998 79999999999999999999999999999999988
Q ss_pred cchhhhhhhhhhhhhhhHHHHHHcCCcHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 026773 162 KGAYRFTISIVGIILKKLIRVSHFNRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQLYGVDEARN 227 (233)
Q Consensus 162 ~~~y~~~~~~~~a~~~rG~al~~lGryeeAi~~f~kAL~lnP~d~e~~~~~~l~~a~Lg~~dEA~~ 227 (233)
..++ ++|.++..+|++++|+++|+++++++|++++.+..++.++..+|+.++|..
T Consensus 231 --~a~~---------~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~ 285 (336)
T 1p5q_A 231 --KGLS---------RRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREK 285 (336)
T ss_dssp --HHHH---------HHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --HHHH---------HHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 3433 599999999999999999999999999999999999999999999999854
No 45
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=99.56 E-value=7.1e-15 Score=109.63 Aligned_cols=103 Identities=13% Similarity=0.105 Sum_probs=88.1
Q ss_pred cchHHHHHHHHhcccC---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHH
Q 026773 104 IPSVSGIWDALTGGNN---NSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLI 180 (233)
Q Consensus 104 ~~~a~~i~~~~i~~~l---~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~ 180 (233)
..+|...+.+++ ++ +|+++.+|.++|.++..+|++++|++.|++|++++|+++ ..+. ++|.
T Consensus 6 ~~~A~~~~~~al--~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~-----~~~~---------~l~~ 69 (117)
T 3k9i_A 6 EAQAVPYYEKAI--ASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQ-----ALRV---------FYAM 69 (117)
T ss_dssp -CCCHHHHHHHH--SSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH-----HHHH---------HHHH
T ss_pred HHHHHHHHHHHH--HcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCch-----HHHH---------HHHH
Confidence 366888999999 77 699999999999999999999999999999999999988 4444 4999
Q ss_pred HHHHcCCcHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCH
Q 026773 181 RVSHFNRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQLYGV 222 (233)
Q Consensus 181 al~~lGryeeAi~~f~kAL~lnP~d~e~~~~~~l~~a~Lg~~ 222 (233)
++..+|++++|++.|+++++++|++++...+........+..
T Consensus 70 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ai~~~~~~l 111 (117)
T 3k9i_A 70 VLYNLGRYEQGVELLLKIIAETSDDETIQSYKQAILFYADKL 111 (117)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHCCCHHHHHTHHHHHHHTTCT
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999998655554444444433
No 46
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=99.56 E-value=1.9e-14 Score=112.10 Aligned_cols=107 Identities=11% Similarity=0.097 Sum_probs=90.0
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--------CCCCCCCccchhhhhhhhhhhhhhhHHHHHHcCCcHHHHH
Q 026773 122 REAVVAIRRGMLLFRQGDVVGSVAEFDKAIEL--------DPRQKISGKGAYRFTISIVGIILKKLIRVSHFNRFEEGAE 193 (233)
Q Consensus 122 ~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeL--------dP~~~~~~~~~y~~~~~~~~a~~~rG~al~~lGryeeAi~ 193 (233)
..+.++..+|..++..|+|++|+..|++||++ +|.++. ..-.....+.+++++|.++..+|+|++|+.
T Consensus 9 ~~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~nla~~~~~~~~~~~A~~ 84 (162)
T 3rkv_A 9 KSVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPE----WVELDRKNIPLYANMSQCYLNIGDLHEAEE 84 (162)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHH----HHHHHHTHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHH----HHHHHHHHHHHHHHHHHHHHhcCcHHHHHH
Confidence 45789999999999999999999999999999 444320 000001123456789999999999999999
Q ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhh
Q 026773 194 QFRIDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLEA 232 (233)
Q Consensus 194 ~f~kAL~lnP~d~e~~~~~~l~~a~Lg~~dEA~~~~l~~ 232 (233)
+++++++++|+++..++.++.|+..+|++++|...|.++
T Consensus 85 ~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~a 123 (162)
T 3rkv_A 85 TSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLL 123 (162)
T ss_dssp HHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHH
Confidence 999999999999999999999999999999999998764
No 47
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.56 E-value=2.9e-14 Score=116.26 Aligned_cols=114 Identities=18% Similarity=0.202 Sum_probs=66.4
Q ss_pred ccCcchHHHHHHHHhcccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHH
Q 026773 101 RLFIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLI 180 (233)
Q Consensus 101 ~~~~~~a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~ 180 (233)
.+-...|...+.+++ +++|+++.+|..+|.++...|++++|++.|++|++++|+++ ..+. ++|.
T Consensus 56 ~~~~~~A~~~~~~al--~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~-----~~~~---------~la~ 119 (275)
T 1xnf_A 56 LGLRALARNDFSQAL--AIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYN-----YAHL---------NRGI 119 (275)
T ss_dssp TTCHHHHHHHHHHHH--HHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCT-----HHHH---------HHHH
T ss_pred cccHHHHHHHHHHHH--HcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCcccc-----HHHH---------HHHH
Confidence 334445555555555 55666666666666666666666666666666666666655 2222 3666
Q ss_pred HHHHcCCcHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHh
Q 026773 181 RVSHFNRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLE 231 (233)
Q Consensus 181 al~~lGryeeAi~~f~kAL~lnP~d~e~~~~~~l~~a~Lg~~dEA~~~~l~ 231 (233)
++..+|++++|++.|+++++++|+++....+.+.+ ...|++++|...+.+
T Consensus 120 ~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~~~~A~~~~~~ 169 (275)
T 1xnf_A 120 ALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLA-EQKLDEKQAKEVLKQ 169 (275)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH-HHHHCHHHHHHHHHH
T ss_pred HHHHhccHHHHHHHHHHHHHhCCCChHHHHHHHHH-HHhcCHHHHHHHHHH
Confidence 66666666666666666666666666554444444 333666666665543
No 48
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.56 E-value=8.9e-14 Score=105.64 Aligned_cols=120 Identities=12% Similarity=0.106 Sum_probs=106.7
Q ss_pred HHHhccCcchHHHHHHHHhcccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhh
Q 026773 97 TFTRRLFIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIIL 176 (233)
Q Consensus 97 ~~~r~~~~~~a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~ 176 (233)
.+.+.+-...|...+..++ +.+|+++.++..+|.++...|++++|+..++++++++|+++ ..+.
T Consensus 17 ~~~~~~~~~~A~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~-----~~~~--------- 80 (186)
T 3as5_A 17 SHAKAGRYSQAVMLLEQVY--DADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNV-----KVAT--------- 80 (186)
T ss_dssp HHHHHTCHHHHHHHHTTTC--CTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH-----HHHH---------
T ss_pred HHHHhcCHHHHHHHHHHHH--HhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH-----HHHH---------
Confidence 3444555677888888887 88999999999999999999999999999999999999887 3333
Q ss_pred hhHHHHHHcCCcHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhh
Q 026773 177 KKLIRVSHFNRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLEA 232 (233)
Q Consensus 177 ~rG~al~~lGryeeAi~~f~kAL~lnP~d~e~~~~~~l~~a~Lg~~dEA~~~~l~~ 232 (233)
.+|.++...|++++|++.|+++++.+|+++..+...+.++..+|++++|...+.++
T Consensus 81 ~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~ 136 (186)
T 3as5_A 81 VLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIA 136 (186)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHH
Confidence 59999999999999999999999999999998888889999999999999998764
No 49
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.56 E-value=5.6e-14 Score=112.52 Aligned_cols=100 Identities=18% Similarity=0.124 Sum_probs=51.3
Q ss_pred cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHHHcCCcHHHHHHHHH
Q 026773 118 NNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSHFNRFEEGAEQFRI 197 (233)
Q Consensus 118 ~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~lGryeeAi~~f~k 197 (233)
+++|+++.++..+|.++..+|++++|++.|+++++++|+++ . ++..+|.++...|++++|++.+++
T Consensus 85 ~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~-----~---------~~~~~a~~~~~~~~~~~A~~~~~~ 150 (243)
T 2q7f_A 85 ELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAGMENG-----D---------LFYMLGTVLVKLEQPKLALPYLQR 150 (243)
T ss_dssp HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCCSH-----H---------HHHHHHHHHHHTSCHHHHHHHHHH
T ss_pred HcCCcchHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCH-----H---------HHHHHHHHHHHhccHHHHHHHHHH
Confidence 34444444444444444444444444444444444444433 1 122355556666666666666666
Q ss_pred HHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHh
Q 026773 198 DVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLE 231 (233)
Q Consensus 198 AL~lnP~d~e~~~~~~l~~a~Lg~~dEA~~~~l~ 231 (233)
+++++|++++.+...+.++...|++++|...+.+
T Consensus 151 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 184 (243)
T 2q7f_A 151 AVELNENDTEARFQFGMCLANEGMLDEALSQFAA 184 (243)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHH
T ss_pred HHHhCCccHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 6666665555555555555555666666555544
No 50
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.55 E-value=3.5e-14 Score=122.08 Aligned_cols=119 Identities=16% Similarity=0.192 Sum_probs=106.1
Q ss_pred HHhccCcchHHHHHHHHhcccCCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhh
Q 026773 98 FTRRLFIPSVSGIWDALTGGNNNSR--EAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGII 175 (233)
Q Consensus 98 ~~r~~~~~~a~~i~~~~i~~~l~P~--~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~ 175 (233)
+.+.+-...|...+..++ +++|+ ++.+|..+|.++..+|++++|++.|+++++++|+++ ..+.
T Consensus 187 ~~~~g~~~~A~~~~~~al--~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~-----~~~~-------- 251 (365)
T 4eqf_A 187 PVDSSVLEGVKELYLEAA--HQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDY-----SLWN-------- 251 (365)
T ss_dssp --CCHHHHHHHHHHHHHH--HHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCH-----HHHH--------
T ss_pred HhhhhhHHHHHHHHHHHH--HhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH-----HHHH--------
Confidence 333445567888888888 88999 999999999999999999999999999999999987 3333
Q ss_pred hhhHHHHHHcCCcHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhh
Q 026773 176 LKKLIRVSHFNRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLEA 232 (233)
Q Consensus 176 ~~rG~al~~lGryeeAi~~f~kAL~lnP~d~e~~~~~~l~~a~Lg~~dEA~~~~l~~ 232 (233)
++|.++..+|++++|++.|+++++++|++++.+..++.++..+|++++|...+.++
T Consensus 252 -~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 307 (365)
T 4eqf_A 252 -RLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAVSNFLTA 307 (365)
T ss_dssp -HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHH
T ss_pred -HHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 59999999999999999999999999999999999999999999999999998865
No 51
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=99.55 E-value=3.3e-15 Score=107.18 Aligned_cols=94 Identities=13% Similarity=0.122 Sum_probs=83.5
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHHHcCCcHHHHHHHHHHHHcC
Q 026773 123 EAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSHFNRFEEGAEQFRIDVAQN 202 (233)
Q Consensus 123 ~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~lGryeeAi~~f~kAL~ln 202 (233)
++++|..+|.+++..|++++|++.|++|++++|+++ ..+. ++|.++..+|++++|++.|+++++++
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~-----~~~~---------~lg~~~~~~g~~~~A~~~~~~al~~~ 68 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNP-----VGYS---------NKAMALIKLGEYTQAIQMCQQGLRYT 68 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCH-----HHHH---------HHHHHHHHTTCHHHHHHHHHHHHTSC
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCH-----HHHH---------HHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence 578999999999999999999999999999999987 3433 59999999999999999999999999
Q ss_pred CCC------HHHHHHHHHHHHHcCCHHHHHHHHH
Q 026773 203 PND------TEESIWCFLCEAQLYGVDEARNRFL 230 (233)
Q Consensus 203 P~d------~e~~~~~~l~~a~Lg~~dEA~~~~l 230 (233)
|++ ...+..++.+...+|+.++|...+.
T Consensus 69 p~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 102 (111)
T 2l6j_A 69 STAEHVAIRSKLQYRLELAQGAVGSVQIPVVEVD 102 (111)
T ss_dssp SSTTSHHHHHHHHHHHHHHHHHHHCCCCCSSSSS
T ss_pred CCccHHHHHHHHHHHHHHHHHHHHhHhhhHhHHH
Confidence 998 7777888888888888877766554
No 52
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.55 E-value=6.4e-14 Score=104.32 Aligned_cols=101 Identities=13% Similarity=0.082 Sum_probs=66.9
Q ss_pred hHHHhccCcchHHHHHHHHhcccCCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhh
Q 026773 96 PTFTRRLFIPSVSGIWDALTGGNNNSRE---AVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIV 172 (233)
Q Consensus 96 ~~~~r~~~~~~a~~i~~~~i~~~l~P~~---a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~ 172 (233)
..+.+.+-...|...|..++ +++|++ +.+|..+|.++..+|++++|+..|+++++++|+++ ..++
T Consensus 36 ~~~~~~~~~~~A~~~~~~a~--~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~-----~~~~----- 103 (148)
T 2dba_A 36 NELFKCGDYGGALAAYTQAL--GLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDV-----KALY----- 103 (148)
T ss_dssp HHHHTTTCHHHHHHHHHHHH--TSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCH-----HHHH-----
T ss_pred HHHHHhCCHHHHHHHHHHHH--HHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCH-----HHHH-----
Confidence 34444455566666777766 666766 67777777777777777777777777777777665 2323
Q ss_pred hhhhhhHHHHHHcCCcHHHHHHHHHHHHcCCCCHHHHHHH
Q 026773 173 GIILKKLIRVSHFNRFEEGAEQFRIDVAQNPNDTEESIWC 212 (233)
Q Consensus 173 ~a~~~rG~al~~lGryeeAi~~f~kAL~lnP~d~e~~~~~ 212 (233)
++|.++..+|++++|++.|+++++++|++.+.+.+.
T Consensus 104 ----~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 139 (148)
T 2dba_A 104 ----RRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEAL 139 (148)
T ss_dssp ----HHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHH
T ss_pred ----HHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHH
Confidence 367777777777777777777777777766644433
No 53
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=99.55 E-value=9.4e-14 Score=98.70 Aligned_cols=100 Identities=15% Similarity=0.140 Sum_probs=70.9
Q ss_pred HHHhccCcchHHHHHHHHhcccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhh
Q 026773 97 TFTRRLFIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIIL 176 (233)
Q Consensus 97 ~~~r~~~~~~a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~ 176 (233)
.+.+.+-...|...+..++ +.+|+++.++..+|.++..+|++++|+..++++++++|+++ ..++
T Consensus 13 ~~~~~~~~~~A~~~~~~~~--~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~-----~~~~--------- 76 (118)
T 1elw_A 13 KALSVGNIDDALQCYSEAI--KLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWG-----KGYS--------- 76 (118)
T ss_dssp HHHHTTCHHHHHHHHHHHH--HHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCH-----HHHH---------
T ss_pred HHHHcccHHHHHHHHHHHH--HHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccH-----HHHH---------
Confidence 3444555666777777777 67777777777777777777777777777777777777766 2322
Q ss_pred hhHHHHHHcCCcHHHHHHHHHHHHcCCCCHHHHHHH
Q 026773 177 KKLIRVSHFNRFEEGAEQFRIDVAQNPNDTEESIWC 212 (233)
Q Consensus 177 ~rG~al~~lGryeeAi~~f~kAL~lnP~d~e~~~~~ 212 (233)
++|.++..+|++++|++.|+++++++|+++..+...
T Consensus 77 ~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l 112 (118)
T 1elw_A 77 RKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGL 112 (118)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHH
Confidence 477777777777777777777777777777654443
No 54
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=99.54 E-value=2.7e-15 Score=124.97 Aligned_cols=100 Identities=8% Similarity=0.007 Sum_probs=84.5
Q ss_pred hHHHhccCcchHHHHHHHHhcccCCCC-------CHH-----HHHHHHHHHHHcCCHHHHHHHHHHHHhh-------CCC
Q 026773 96 PTFTRRLFIPSVSGIWDALTGGNNNSR-------EAV-----VAIRRGMLLFRQGDVVGSVAEFDKAIEL-------DPR 156 (233)
Q Consensus 96 ~~~~r~~~~~~a~~i~~~~i~~~l~P~-------~a~-----Ay~~RG~a~~~lGdyeeAIadfdkAIeL-------dP~ 156 (233)
..+-+.+-...|...|++++ +++|+ +.. +|.++|.++..+|+|++|+++|++||++ +|+
T Consensus 19 ~~l~~~g~~eeAi~~Y~kAL--~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd 96 (159)
T 2hr2_A 19 QRQLVAGEYDEAAANCRRAM--EISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQD 96 (159)
T ss_dssp HHHHHHTCHHHHHHHHHHHH--HHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTST
T ss_pred HHHHHCCCHHHHHHHHHHHH--hhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCc
Confidence 33444556678999999999 88888 444 9999999999999999999999999999 998
Q ss_pred CCCCccchhhhhhhhhhhhhhhHHHHHHcCCcHHHHHHHHHHHHcCCCCHH
Q 026773 157 QKISGKGAYRFTISIVGIILKKLIRVSHFNRFEEGAEQFRIDVAQNPNDTE 207 (233)
Q Consensus 157 ~~~~~~~~y~~~~~~~~a~~~rG~al~~lGryeeAi~~f~kAL~lnP~d~e 207 (233)
++ ..+ +.+++++|.++..+|+++||+++|+++++++|+|..
T Consensus 97 ~~-----~A~-----~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~ 137 (159)
T 2hr2_A 97 EG-----KLW-----ISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKG 137 (159)
T ss_dssp HH-----HHH-----HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCS
T ss_pred hH-----HHH-----HHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHH
Confidence 87 333 012246999999999999999999999999998864
No 55
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=99.54 E-value=4.9e-14 Score=101.62 Aligned_cols=101 Identities=19% Similarity=0.193 Sum_probs=92.4
Q ss_pred cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHHHcCCcHHHHHHHHH
Q 026773 118 NNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSHFNRFEEGAEQFRI 197 (233)
Q Consensus 118 ~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~lGryeeAi~~f~k 197 (233)
+.+|+++.++..+|.++...|++++|+..|+++++++|+++ ..+. ++|.++...|++++|++.+++
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~-----~~~~---------~~a~~~~~~~~~~~A~~~~~~ 71 (131)
T 2vyi_A 6 EEDSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANA-----VYFC---------NRAAAYSKLGNYAGAVQDCER 71 (131)
T ss_dssp -CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH-----HHHH---------HHHHHHHHTTCHHHHHHHHHH
T ss_pred hcchhhhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCH-----HHHH---------HHHHHHHHhhchHHHHHHHHH
Confidence 46788899999999999999999999999999999999887 3433 599999999999999999999
Q ss_pred HHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhh
Q 026773 198 DVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLEA 232 (233)
Q Consensus 198 AL~lnP~d~e~~~~~~l~~a~Lg~~dEA~~~~l~~ 232 (233)
+++++|+++..+...+.++..+|++++|...+.++
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 106 (131)
T 2vyi_A 72 AICIDPAYSKAYGRMGLALSSLNKHVEAVAYYKKA 106 (131)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHhcCccCHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 99999999999888999999999999999998764
No 56
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.54 E-value=1.2e-13 Score=112.57 Aligned_cols=113 Identities=13% Similarity=0.079 Sum_probs=102.0
Q ss_pred cchHHHHHHHHhcccC----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhH
Q 026773 104 IPSVSGIWDALTGGNN----NSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKL 179 (233)
Q Consensus 104 ~~~a~~i~~~~i~~~l----~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG 179 (233)
...|...+.+++ +. +|+++.+|..+|.++...|++++|+..|+++++++|+++ ..+. ++|
T Consensus 21 ~~~A~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~-----~~~~---------~la 84 (275)
T 1xnf_A 21 QEVILARMEQIL--ASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMP-----EVFN---------YLG 84 (275)
T ss_dssp HHHHHHHHHHHH--TSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCH-----HHHH---------HHH
T ss_pred HHHHHHHHHHHH--hcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcH-----HHHH---------HHH
Confidence 367888999988 44 467899999999999999999999999999999999987 3333 599
Q ss_pred HHHHHcCCcHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhh
Q 026773 180 IRVSHFNRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLEA 232 (233)
Q Consensus 180 ~al~~lGryeeAi~~f~kAL~lnP~d~e~~~~~~l~~a~Lg~~dEA~~~~l~~ 232 (233)
.++...|++++|++.|+++++++|++++.+..++.++..+|++++|...+.++
T Consensus 85 ~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 137 (275)
T 1xnf_A 85 IYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAF 137 (275)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHccCHHHHHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999998764
No 57
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=99.54 E-value=1.7e-14 Score=109.97 Aligned_cols=91 Identities=7% Similarity=0.075 Sum_probs=79.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHHHcCCcHHHHHHHHHHHHcCCC
Q 026773 125 VVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSHFNRFEEGAEQFRIDVAQNPN 204 (233)
Q Consensus 125 ~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~lGryeeAi~~f~kAL~lnP~ 204 (233)
..++.+|.++...|++++|+..|++|++++|+++ ..++ .+|.++..+|++++|++.|+++++++|+
T Consensus 18 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~-----~a~~---------~lg~~~~~~g~~~~A~~~~~~al~l~P~ 83 (121)
T 1hxi_A 18 ENPMEEGLSMLKLANLAEAALAFEAVCQKEPERE-----EAWR---------SLGLTQAENEKDGLAIIALNHARMLDPK 83 (121)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCH-----HHHH---------HHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCH-----HHHH---------HHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 3578999999999999999999999999999998 4444 4999999999999999999999999998
Q ss_pred CHH---HHHHHHHHHHHcCCHHHHHHHHHhh
Q 026773 205 DTE---ESIWCFLCEAQLYGVDEARNRFLEA 232 (233)
Q Consensus 205 d~e---~~~~~~l~~a~Lg~~dEA~~~~l~~ 232 (233)
+++ . ++.++..+|++++|+..+.++
T Consensus 84 ~~~~~~~---la~~~~~~g~~~~A~~~~~~a 111 (121)
T 1hxi_A 84 DIAVHAA---LAVSHTNEHNANAALASLRAW 111 (121)
T ss_dssp CHHHHHH---HHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHH---HHHHHHHcCCHHHHHHHHHHH
Confidence 753 5 445677889999999988764
No 58
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=99.53 E-value=7.2e-15 Score=130.25 Aligned_cols=126 Identities=11% Similarity=0.157 Sum_probs=102.3
Q ss_pred chHHHHHHHHhcccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccc-hhhhhhhhhhhhhhhHHHHH
Q 026773 105 PSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKG-AYRFTISIVGIILKKLIRVS 183 (233)
Q Consensus 105 ~~a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~-~y~~~~~~~~a~~~rG~al~ 183 (233)
..|...|..++ +++|+++.+|..+|.+++.+|++++|++.|++|++++|++...... ..-.....+.+++++|.++.
T Consensus 130 ~~A~~~~~~a~--~~~p~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~ 207 (336)
T 1p5q_A 130 EKAKESWEMNS--EEKLEQSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHL 207 (336)
T ss_dssp ECCCCGGGCCH--HHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccchhcCCH--HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555 6789999999999999999999999999999999999998410000 00000011345678999999
Q ss_pred HcCCcHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhh
Q 026773 184 HFNRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLEA 232 (233)
Q Consensus 184 ~lGryeeAi~~f~kAL~lnP~d~e~~~~~~l~~a~Lg~~dEA~~~~l~~ 232 (233)
.+|++++|++.|+++++++|+++..++.++.++..+|++++|+..|.++
T Consensus 208 ~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~a 256 (336)
T 1p5q_A 208 KLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKV 256 (336)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999865
No 59
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=99.53 E-value=1.9e-13 Score=97.72 Aligned_cols=106 Identities=15% Similarity=0.197 Sum_probs=66.6
Q ss_pred HHHhccCcchHHHHHHHHhcccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhh
Q 026773 97 TFTRRLFIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIIL 176 (233)
Q Consensus 97 ~~~r~~~~~~a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~ 176 (233)
.+.+.+-...|...+.+++ +.+|+++.++..+|.++...|++++|+..|+++++++|+++ ..+.
T Consensus 18 ~~~~~~~~~~A~~~~~~~~--~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~-----~~~~--------- 81 (125)
T 1na0_A 18 AYYKQGDYDEAIEYYQKAL--ELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNA-----EAWY--------- 81 (125)
T ss_dssp HHHHTTCHHHHHHHHHHHH--HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH-----HHHH---------
T ss_pred HHHHcCCHHHHHHHHHHHH--HHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccH-----HHHH---------
Confidence 3444445556666666666 56666677777777777777777777777777777766655 2222
Q ss_pred hhHHHHHHcCCcHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Q 026773 177 KKLIRVSHFNRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQ 218 (233)
Q Consensus 177 ~rG~al~~lGryeeAi~~f~kAL~lnP~d~e~~~~~~l~~a~ 218 (233)
++|.++...|++++|++.|+++++++|++++.+..++.+...
T Consensus 82 ~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 123 (125)
T 1na0_A 82 NLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQK 123 (125)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHh
Confidence 366667777777777777777777777666655555444433
No 60
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.53 E-value=1.2e-13 Score=108.35 Aligned_cols=106 Identities=11% Similarity=0.090 Sum_probs=82.7
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhh-------------------------hhhhhhh
Q 026773 122 REAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTI-------------------------SIVGIIL 176 (233)
Q Consensus 122 ~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~-------------------------~~~~a~~ 176 (233)
+++.+|+++|.++..+|++++|++.|++||+++|+++ ..+... ....++.
T Consensus 3 e~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~-----~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 77 (184)
T 3vtx_A 3 ETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNV-----ETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYY 77 (184)
T ss_dssp -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCH-----HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHH
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-----HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHH
Confidence 5789999999999999999999999999999999998 333320 1155666
Q ss_pred hhHHHHHHcCCcHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhh
Q 026773 177 KKLIRVSHFNRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLEA 232 (233)
Q Consensus 177 ~rG~al~~lGryeeAi~~f~kAL~lnP~d~e~~~~~~l~~a~Lg~~dEA~~~~l~~ 232 (233)
.+|.++...+++++|++.++++++++|++++.+..++.++.++|++++|+..|.++
T Consensus 78 ~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~ 133 (184)
T 3vtx_A 78 ILGSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKT 133 (184)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHH
Confidence 77777777777777777777777777777777777777777788888887777653
No 61
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.53 E-value=1.8e-13 Score=109.47 Aligned_cols=121 Identities=12% Similarity=0.132 Sum_probs=108.4
Q ss_pred hHHHhccCcchHHHHHHHHhcccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhh
Q 026773 96 PTFTRRLFIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGII 175 (233)
Q Consensus 96 ~~~~r~~~~~~a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~ 175 (233)
..+.+.+-...|...+..++ +++|+++.++..+|.++...|++++|+..++++++++|+++ ..+.
T Consensus 99 ~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~-----~~~~-------- 163 (243)
T 2q7f_A 99 NVYVVKEMYKEAKDMFEKAL--RAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDT-----EARF-------- 163 (243)
T ss_dssp HHHHHTTCHHHHHHHHHHHH--HHTCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCH-----HHHH--------
T ss_pred HHHHHhccHHHHHHHHHHHH--HhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccH-----HHHH--------
Confidence 33444556678888999988 88999999999999999999999999999999999999887 3433
Q ss_pred hhhHHHHHHcCCcHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhh
Q 026773 176 LKKLIRVSHFNRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLEA 232 (233)
Q Consensus 176 ~~rG~al~~lGryeeAi~~f~kAL~lnP~d~e~~~~~~l~~a~Lg~~dEA~~~~l~~ 232 (233)
.+|.++...|++++|++.|+++++.+|+++..+..++.++..+|++++|...+.++
T Consensus 164 -~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~ 219 (243)
T 2q7f_A 164 -QFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKA 219 (243)
T ss_dssp -HHHHHHHHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHH
T ss_pred -HHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 59999999999999999999999999999998888999999999999999998764
No 62
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.52 E-value=1.3e-13 Score=119.79 Aligned_cols=110 Identities=13% Similarity=0.029 Sum_probs=61.7
Q ss_pred hHHHHHHHHhcccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHHHc
Q 026773 106 SVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSHF 185 (233)
Q Consensus 106 ~a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~l 185 (233)
.|...+..++ +++|+++.+|..+|.++...|++++|++.|+++++++|+++ . ++.++|.++...
T Consensus 255 ~A~~~~~~al--~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~-----~---------~~~~l~~~~~~~ 318 (388)
T 1w3b_A 255 LAIDTYRRAI--ELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHA-----D---------SLNNLANIKREQ 318 (388)
T ss_dssp HHHHHHHHHH--HTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCH-----H---------HHHHHHHHHHTT
T ss_pred HHHHHHHHHH--hhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccH-----H---------HHHHHHHHHHHc
Confidence 3444444444 44455555555555555555555555555555555554444 1 223466666666
Q ss_pred CCcHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHh
Q 026773 186 NRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLE 231 (233)
Q Consensus 186 GryeeAi~~f~kAL~lnP~d~e~~~~~~l~~a~Lg~~dEA~~~~l~ 231 (233)
|++++|++.|+++++++|++++.+..++.++.++|++++|...+.+
T Consensus 319 g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 364 (388)
T 1w3b_A 319 GNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKE 364 (388)
T ss_dssp TCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 6666666666666666666666666666666666666666666654
No 63
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.52 E-value=1.2e-13 Score=119.98 Aligned_cols=123 Identities=14% Similarity=0.036 Sum_probs=67.1
Q ss_pred cCcchHHHHHHHHhcccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhh------------
Q 026773 102 LFIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTI------------ 169 (233)
Q Consensus 102 ~~~~~a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~------------ 169 (233)
+-..+|...+.+++ +++|+++.+|..+|.++...|++++|++.|+++++++|++. ..+...
T Consensus 81 g~~~~A~~~~~~al--~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~-----~~~~~l~~~~~~~g~~~~ 153 (388)
T 1w3b_A 81 GQLQEAIEHYRHAL--RLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLY-----CVRSDLGNLLKALGRLEE 153 (388)
T ss_dssp TCHHHHHHHHHHHH--HHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCT-----HHHHHHHHHHHTTSCHHH
T ss_pred CCHHHHHHHHHHHH--HcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH-----HHHHHHHHHHHHccCHHH
Confidence 33444555555555 45555555555555555555555555555555555555544 221110
Q ss_pred -------------hhhhhhhhhHHHHHHcCCcHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHh
Q 026773 170 -------------SIVGIILKKLIRVSHFNRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLE 231 (233)
Q Consensus 170 -------------~~~~a~~~rG~al~~lGryeeAi~~f~kAL~lnP~d~e~~~~~~l~~a~Lg~~dEA~~~~l~ 231 (233)
....++.++|.++...|++++|++.|+++++++|++++.+..++.++...|++++|...+.+
T Consensus 154 A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~ 228 (388)
T 1w3b_A 154 AKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLR 228 (388)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 00112334666666666666666666666666666666666666666666666666666554
No 64
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=99.52 E-value=6.1e-14 Score=112.65 Aligned_cols=117 Identities=14% Similarity=0.118 Sum_probs=101.4
Q ss_pred chhHHHhccCcchHHHHHHHHhcccCCCCCH----------------HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Q 026773 94 RAPTFTRRLFIPSVSGIWDALTGGNNNSREA----------------VVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQ 157 (233)
Q Consensus 94 ~~~~~~r~~~~~~a~~i~~~~i~~~l~P~~a----------------~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~ 157 (233)
....+-+.+-...|...|..++ ++.|+++ .+|.++|.++..+|++++|+.+|++|++++|++
T Consensus 44 ~g~~~~~~~~~~~A~~~~~~al--~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~ 121 (198)
T 2fbn_A 44 EGNEFFKKNEINEAIVKYKEAL--DFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNN 121 (198)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHH--HTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTC
T ss_pred HHHHHHHcCCHHHHHHHHHHHH--HHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccc
Confidence 3345556667778999999999 8888887 999999999999999999999999999999988
Q ss_pred CCCccchhhhhhhhhhhhhhhHHHHHHcCCcHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHH
Q 026773 158 KISGKGAYRFTISIVGIILKKLIRVSHFNRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQLYGVDEAR 226 (233)
Q Consensus 158 ~~~~~~~y~~~~~~~~a~~~rG~al~~lGryeeAi~~f~kAL~lnP~d~e~~~~~~l~~a~Lg~~dEA~ 226 (233)
+ ..++ ++|.++..+|++++|++.|+++++++|++++.+...+.|...+++.+++.
T Consensus 122 ~-----~~~~---------~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~ 176 (198)
T 2fbn_A 122 V-----KALY---------KLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLKEARKKD 176 (198)
T ss_dssp H-----HHHH---------HHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHC--
T ss_pred H-----HHHH---------HHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 7 3444 59999999999999999999999999999998888888888888777665
No 65
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=99.52 E-value=1.6e-13 Score=101.07 Aligned_cols=102 Identities=11% Similarity=0.051 Sum_probs=73.7
Q ss_pred hHHHhccCcchHHHHHHHHhcccCCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhh
Q 026773 96 PTFTRRLFIPSVSGIWDALTGGNNNSREA---VVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIV 172 (233)
Q Consensus 96 ~~~~r~~~~~~a~~i~~~~i~~~l~P~~a---~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~ 172 (233)
..+.+.+-...|...+..++ +.+|+++ .+++.+|.++..+|++++|+..|+++++++|+++ .. .
T Consensus 10 ~~~~~~~~~~~A~~~~~~~~--~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~------~~-----~ 76 (129)
T 2xev_A 10 FDALKNGKYDDASQLFLSFL--ELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHD------KA-----A 76 (129)
T ss_dssp HHHHHTTCHHHHHHHHHHHH--HHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTST------TH-----H
T ss_pred HHHHHhCCHHHHHHHHHHHH--HHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCc------cc-----H
Confidence 33444555666777777777 6778777 6888888888888888888888888888888765 11 2
Q ss_pred hhhhhhHHHHHHcCCcHHHHHHHHHHHHcCCCCHHHHH
Q 026773 173 GIILKKLIRVSHFNRFEEGAEQFRIDVAQNPNDTEESI 210 (233)
Q Consensus 173 ~a~~~rG~al~~lGryeeAi~~f~kAL~lnP~d~e~~~ 210 (233)
.+++++|.++..+|++++|++.|+++++.+|+++....
T Consensus 77 ~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 114 (129)
T 2xev_A 77 GGLLKLGLSQYGEGKNTEAQQTLQQVATQYPGSDAARV 114 (129)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTSHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCChHHHH
Confidence 35667788888888888888888888888887775433
No 66
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.51 E-value=4.1e-13 Score=111.57 Aligned_cols=120 Identities=13% Similarity=-0.057 Sum_probs=104.5
Q ss_pred HHHhcc-CcchHHHHHHHHhcccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhh
Q 026773 97 TFTRRL-FIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGII 175 (233)
Q Consensus 97 ~~~r~~-~~~~a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~ 175 (233)
.+.+.+ ....|...+..++ +++|+++.+|..+|.++...|++++|+..|+++++++|++. ..++
T Consensus 99 ~~~~~~~~~~~A~~~~~~a~--~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~-----~~~~-------- 163 (330)
T 3hym_B 99 YYLMVGHKNEHARRYLSKAT--TLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCH-----LPML-------- 163 (330)
T ss_dssp HHHHSCSCHHHHHHHHHHHH--TTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCS-----HHHH--------
T ss_pred HHHHhhhhHHHHHHHHHHHH--HhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccH-----HHHH--------
Confidence 344444 5567888888888 88999999999999999999999999999999999999887 3333
Q ss_pred hhhHHHHHHcCCcHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhh
Q 026773 176 LKKLIRVSHFNRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLEA 232 (233)
Q Consensus 176 ~~rG~al~~lGryeeAi~~f~kAL~lnP~d~e~~~~~~l~~a~Lg~~dEA~~~~l~~ 232 (233)
.+|.++...|++++|++.|+++++++|+++..+..++.++..+|++++|...+.++
T Consensus 164 -~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 219 (330)
T 3hym_B 164 -YIGLEYGLTNNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDA 219 (330)
T ss_dssp -HHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred -HHHHHHHHHhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 48999999999999999999999999999998888899999999999999988764
No 67
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=99.51 E-value=1.9e-14 Score=119.71 Aligned_cols=96 Identities=19% Similarity=0.313 Sum_probs=84.4
Q ss_pred HHHhccCcchHHHHHHHHhcccCCCCCHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHhhCCCCCCCccchhh
Q 026773 97 TFTRRLFIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDV----------VGSVAEFDKAIELDPRQKISGKGAYR 166 (233)
Q Consensus 97 ~~~r~~~~~~a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~lGdy----------eeAIadfdkAIeLdP~~~~~~~~~y~ 166 (233)
.+.|-..+..|...+..++ +++|+++++|+++|.++..+|++ ++||..|++||++||++. ..+
T Consensus 11 ~~~r~~~feeA~~~~~~Ai--~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~-----~A~ 83 (158)
T 1zu2_A 11 EFDRILLFEQIRQDAENTY--KSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKD-----EAV 83 (158)
T ss_dssp SHHHHHHHHHHHHHHHHHH--HHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCH-----HHH
T ss_pred HHHHHhHHHHHHHHHHHHH--HHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcH-----HHH
Confidence 3455556678899999999 99999999999999999999875 599999999999999998 455
Q ss_pred hhhhhhhhhhhhHHHHHHcC-----------CcHHHHHHHHHHHHcCCCCHHH
Q 026773 167 FTISIVGIILKKLIRVSHFN-----------RFEEGAEQFRIDVAQNPNDTEE 208 (233)
Q Consensus 167 ~~~~~~~a~~~rG~al~~lG-----------ryeeAi~~f~kAL~lnP~d~e~ 208 (233)
|+ +|.+|..+| ++++|+++|++|++++|++...
T Consensus 84 ~~---------LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~y 127 (158)
T 1zu2_A 84 WC---------IGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHY 127 (158)
T ss_dssp HH---------HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHH
T ss_pred HH---------HHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHhCCCCHHH
Confidence 54 999999885 8999999999999999998754
No 68
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.51 E-value=2.3e-13 Score=110.48 Aligned_cols=128 Identities=10% Similarity=-0.031 Sum_probs=85.3
Q ss_pred HHHhccCcchHHHHHHHHhcccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhh-------
Q 026773 97 TFTRRLFIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTI------- 169 (233)
Q Consensus 97 ~~~r~~~~~~a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~------- 169 (233)
.+...+-...|...+..++ +++|+++.++..+|.++...|++++|++.|+++++++|++. ..+...
T Consensus 46 ~~~~~~~~~~A~~~~~~al--~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~-----~~~~~la~~~~~~ 118 (252)
T 2ho1_A 46 GYLQRGNTEQAKVPLRKAL--EIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNA-----RVLNNYGGFLYEQ 118 (252)
T ss_dssp HHHHTTCTGGGHHHHHHHH--HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH-----HHHHHHHHHHHHT
T ss_pred HHHHcCChHHHHHHHHHHH--hcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcH-----HHHHHHHHHHHHH
Confidence 3444555666777887777 67788888888888888888888888888888888888765 222210
Q ss_pred --------------h------hhhhhhhhHHHHHHcCCcHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 026773 170 --------------S------IVGIILKKLIRVSHFNRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQLYGVDEARNRF 229 (233)
Q Consensus 170 --------------~------~~~a~~~rG~al~~lGryeeAi~~f~kAL~lnP~d~e~~~~~~l~~a~Lg~~dEA~~~~ 229 (233)
. ...++..+|.++...|++++|++.|+++++++|++++.+..++.++..+|++++|...+
T Consensus 119 g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~ 198 (252)
T 2ho1_A 119 KRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPARQYY 198 (252)
T ss_dssp TCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 0 12344556666666666666666666666666666666666666666666666666665
Q ss_pred Hh
Q 026773 230 LE 231 (233)
Q Consensus 230 l~ 231 (233)
.+
T Consensus 199 ~~ 200 (252)
T 2ho1_A 199 DL 200 (252)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 69
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.51 E-value=2e-13 Score=116.11 Aligned_cols=117 Identities=20% Similarity=0.171 Sum_probs=106.1
Q ss_pred hccCcchHHHHHHHHhcccCCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhh
Q 026773 100 RRLFIPSVSGIWDALTGGNNNSR--EAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILK 177 (233)
Q Consensus 100 r~~~~~~a~~i~~~~i~~~l~P~--~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~ 177 (233)
+.+-...|...+..++ +++|+ ++.++..+|.++...|++++|+..|+++++++|+++ ..+. +
T Consensus 193 ~~~~~~~A~~~~~~a~--~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~-----~~~~---------~ 256 (368)
T 1fch_A 193 SDSLFLEVKELFLAAV--RLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDY-----LLWN---------K 256 (368)
T ss_dssp HHHHHHHHHHHHHHHH--HHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH-----HHHH---------H
T ss_pred hcccHHHHHHHHHHHH--HhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCH-----HHHH---------H
Confidence 4445577888888888 88999 899999999999999999999999999999999887 3333 5
Q ss_pred hHHHHHHcCCcHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhh
Q 026773 178 KLIRVSHFNRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLEA 232 (233)
Q Consensus 178 rG~al~~lGryeeAi~~f~kAL~lnP~d~e~~~~~~l~~a~Lg~~dEA~~~~l~~ 232 (233)
+|.++..+|++++|++.|+++++++|+++..+..++.++.++|++++|...+.++
T Consensus 257 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 311 (368)
T 1fch_A 257 LGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEA 311 (368)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999998764
No 70
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.51 E-value=3.7e-13 Score=105.83 Aligned_cols=119 Identities=16% Similarity=0.057 Sum_probs=73.2
Q ss_pred hccCcchHHHHHHHHhcccCCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhh
Q 026773 100 RRLFIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQ-GDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKK 178 (233)
Q Consensus 100 r~~~~~~a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~l-GdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~r 178 (233)
+.+-...|...+..++ +++|+++.++..+|.++... |++++|+..|+++++ .|.++. . ..++.++
T Consensus 54 ~~~~~~~A~~~~~~a~--~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~-~~~~~~-----~------~~~~~~l 119 (225)
T 2vq2_A 54 YLKVNDKAQESFRQAL--SIKPDSAEINNNYGWFLCGRLNRPAESMAYFDKALA-DPTYPT-----P------YIANLNK 119 (225)
T ss_dssp HTTCHHHHHHHHHHHH--HHCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHT-STTCSC-----H------HHHHHHH
T ss_pred HcCChHHHHHHHHHHH--HhCCCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHc-CcCCcc-----h------HHHHHHH
Confidence 3334445555555555 55566666666666666666 666666666666666 332220 0 1233457
Q ss_pred HHHHHHcCCcHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhh
Q 026773 179 LIRVSHFNRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLEA 232 (233)
Q Consensus 179 G~al~~lGryeeAi~~f~kAL~lnP~d~e~~~~~~l~~a~Lg~~dEA~~~~l~~ 232 (233)
|.++...|++++|++.|+++++.+|+++..+...+.++..+|++++|...+.++
T Consensus 120 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~ 173 (225)
T 2vq2_A 120 GICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGDADYYFKKY 173 (225)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 777777777777777777777777777776666666777777777777766553
No 71
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=99.51 E-value=7.2e-14 Score=103.97 Aligned_cols=108 Identities=11% Similarity=0.091 Sum_probs=90.4
Q ss_pred hHHHhccCcchHHHHHHHHhcccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhh
Q 026773 96 PTFTRRLFIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGII 175 (233)
Q Consensus 96 ~~~~r~~~~~~a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~ 175 (233)
..+.+.+-...|...|..++ +++|+++.+|.++|.++..+|++++|+..|+++++++|+++ ..++
T Consensus 17 ~~~~~~~~~~~A~~~~~~al--~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~-----~~~~-------- 81 (137)
T 3q49_B 17 NRLFVGRKYPEAAACYGRAI--TRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSV-----KAHF-------- 81 (137)
T ss_dssp HHHHHTTCHHHHHHHHHHHH--HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH-----HHHH--------
T ss_pred HHHHHhCcHHHHHHHHHHHH--hhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhH-----HHHH--------
Confidence 44455556678999999999 89999999999999999999999999999999999999987 3433
Q ss_pred hhhHHHHHHcCCcHHHHHHHHHHHHcCCC-----CHHHHHHHHHHHHHc
Q 026773 176 LKKLIRVSHFNRFEEGAEQFRIDVAQNPN-----DTEESIWCFLCEAQL 219 (233)
Q Consensus 176 ~~rG~al~~lGryeeAi~~f~kAL~lnP~-----d~e~~~~~~l~~a~L 219 (233)
++|.++..+|++++|++.|+++++++|+ +.+.......+..+.
T Consensus 82 -~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~l~~~~~~~ 129 (137)
T 3q49_B 82 -FLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKKR 129 (137)
T ss_dssp -HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHHHHH
T ss_pred -HHHHHHHHHhhHHHHHHHHHHHHHHChhHHHHHHHHHHHHHHHHHHHH
Confidence 5999999999999999999999999998 555444444444333
No 72
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.50 E-value=2.9e-13 Score=125.89 Aligned_cols=121 Identities=9% Similarity=-0.038 Sum_probs=108.9
Q ss_pred hHHHhccCcchHHHHHHHHhcccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhh
Q 026773 96 PTFTRRLFIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGII 175 (233)
Q Consensus 96 ~~~~r~~~~~~a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~ 175 (233)
..+.+.+-..+|...+.+++ +++|+++.+|.++|.++..+|++++|++.|++|++++|+++ ..+.
T Consensus 31 ~~~~~~g~~~~A~~~~~~al--~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~-----~~~~-------- 95 (568)
T 2vsy_A 31 DAELGMGDTTAGEMAVQRGL--ALHPGHPEAVARLGRVRWTQQRHAEAAVLLQQASDAAPEHP-----GIAL-------- 95 (568)
T ss_dssp HHHHHHTCHHHHHHHHHHHH--TTSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH-----HHHH--------
T ss_pred HHHHHcCCHHHHHHHHHHHH--HhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCH-----HHHH--------
Confidence 44555566788999999999 89999999999999999999999999999999999999987 3433
Q ss_pred hhhHHHHHHcCCcHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHc---CCHHHHHHHHHhh
Q 026773 176 LKKLIRVSHFNRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQL---YGVDEARNRFLEA 232 (233)
Q Consensus 176 ~~rG~al~~lGryeeAi~~f~kAL~lnP~d~e~~~~~~l~~a~L---g~~dEA~~~~l~~ 232 (233)
++|.++..+|++++|++.|+++++++|++++.+..++.++..+ |+.++|...+.++
T Consensus 96 -~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~a 154 (568)
T 2vsy_A 96 -WLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAA 154 (568)
T ss_dssp -HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHH
T ss_pred -HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHH
Confidence 5999999999999999999999999999999988899999999 9999999988764
No 73
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.50 E-value=1.2e-13 Score=128.45 Aligned_cols=112 Identities=13% Similarity=0.075 Sum_probs=91.3
Q ss_pred chHHHHHHHHhcccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHHH
Q 026773 105 PSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSH 184 (233)
Q Consensus 105 ~~a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~ 184 (233)
++|...+.+++ +++|+++.+|..+|.++..+|++++|++.|++|++++|+++ ..+. ++|.++..
T Consensus 6 ~~A~~~~~~al--~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~-----~~~~---------~lg~~~~~ 69 (568)
T 2vsy_A 6 PRELLQLRAAV--RHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHP-----EAVA---------RLGRVRWT 69 (568)
T ss_dssp -----------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCH-----HHHH---------HHHHHHHH
T ss_pred HHHHHHHHHHH--HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-----HHHH---------HHHHHHHH
Confidence 56778888888 89999999999999999999999999999999999999987 3433 59999999
Q ss_pred cCCcHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhh
Q 026773 185 FNRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLEA 232 (233)
Q Consensus 185 lGryeeAi~~f~kAL~lnP~d~e~~~~~~l~~a~Lg~~dEA~~~~l~~ 232 (233)
+|++++|++.|+++++++|++++.+..++.++..+|++++|...+.++
T Consensus 70 ~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 117 (568)
T 2vsy_A 70 QQRHAEAAVLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRA 117 (568)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999998764
No 74
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=99.50 E-value=6.2e-14 Score=129.54 Aligned_cols=118 Identities=14% Similarity=0.169 Sum_probs=100.5
Q ss_pred hHHHhccCcchHHHHHHHHhcccCCCCC---------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCC
Q 026773 96 PTFTRRLFIPSVSGIWDALTGGNNNSRE---------------AVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKIS 160 (233)
Q Consensus 96 ~~~~r~~~~~~a~~i~~~~i~~~l~P~~---------------a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~ 160 (233)
..+-+.+-...|...|.+++ +++|++ +.+|.++|.++..+|+|++|+.+|++||+++|+++
T Consensus 276 ~~~~~~g~~~~A~~~y~~Al--~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~-- 351 (457)
T 1kt0_A 276 TVYFKGGKYMQAVIQYGKIV--SWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSANE-- 351 (457)
T ss_dssp HHHHHTTCHHHHHHHHHHHH--HHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCH--
T ss_pred HHHHhCCCHHHHHHHHHHHH--HHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccH--
Confidence 34445556778888999998 889998 79999999999999999999999999999999988
Q ss_pred ccchhhhhhhhhhhhhhhHHHHHHcCCcHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 026773 161 GKGAYRFTISIVGIILKKLIRVSHFNRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQLYGVDEARNRF 229 (233)
Q Consensus 161 ~~~~y~~~~~~~~a~~~rG~al~~lGryeeAi~~f~kAL~lnP~d~e~~~~~~l~~a~Lg~~dEA~~~~ 229 (233)
..++ ++|.++..+|++++|+++|+++++++|++.+.+..++.++..+++.++|...+
T Consensus 352 ---~a~~---------~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~ 408 (457)
T 1kt0_A 352 ---KGLY---------RRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNERDRRI 408 (457)
T ss_dssp ---HHHH---------HHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ---HHHH---------HHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444 49999999999999999999999999999999888999999999988887543
No 75
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.50 E-value=4.6e-13 Score=111.24 Aligned_cols=128 Identities=10% Similarity=0.024 Sum_probs=102.1
Q ss_pred HHhccCcchHHHHHHHHhcccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhh
Q 026773 98 FTRRLFIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILK 177 (233)
Q Consensus 98 ~~r~~~~~~a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~ 177 (233)
+.+.+-...|...+..++ +++|+++.++..+|.++..+|++++|+..|++++++.|.... .........++.+
T Consensus 169 ~~~~~~~~~A~~~~~~al--~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~-----~~~~~~~~~~~~~ 241 (330)
T 3hym_B 169 YGLTNNSKLAERFFSQAL--SIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGN-----EVTVDKWEPLLNN 241 (330)
T ss_dssp HHHTTCHHHHHHHHHHHH--TTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSC-----SCTTTTCCHHHHH
T ss_pred HHHHhhHHHHHHHHHHHH--HhCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccc-----cccccHHHHHHHH
Confidence 334445566777777777 788888888888888888888898898888888888754331 0000011234557
Q ss_pred hHHHHHHcCCcHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhh
Q 026773 178 KLIRVSHFNRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLEA 232 (233)
Q Consensus 178 rG~al~~lGryeeAi~~f~kAL~lnP~d~e~~~~~~l~~a~Lg~~dEA~~~~l~~ 232 (233)
+|.++..+|++++|++.|+++++++|++++.+..++.++..+|++++|...+.++
T Consensus 242 la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 296 (330)
T 3hym_B 242 LGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTA 296 (330)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTT
T ss_pred HHHHHHHhcCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999875
No 76
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.50 E-value=1.9e-13 Score=117.76 Aligned_cols=97 Identities=16% Similarity=0.194 Sum_probs=49.6
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHHHcCCcHHHHHHHHHHHH
Q 026773 121 SREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSHFNRFEEGAEQFRIDVA 200 (233)
Q Consensus 121 P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~lGryeeAi~~f~kAL~ 200 (233)
|+++.++..+|.+++..|++++|++.|++|++++|+++ .++. ++|.++..+|++++|+++|+++++
T Consensus 1 p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~-----~~~~---------~la~~~~~~~~~~~A~~~~~~al~ 66 (281)
T 2c2l_A 1 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVA-----VYYT---------NRALCYLKMQQPEQALADCRRALE 66 (281)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCH-----HHHH---------HHHHHHHHTTCHHHHHHHHHHHTT
T ss_pred ChhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccH-----HHHH---------HHHHHHHHhcCHHHHHHHHHHHHH
Confidence 34455555555555555555555555555555555444 2222 355555555555555555555555
Q ss_pred cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHh
Q 026773 201 QNPNDTEESIWCFLCEAQLYGVDEARNRFLE 231 (233)
Q Consensus 201 lnP~d~e~~~~~~l~~a~Lg~~dEA~~~~l~ 231 (233)
++|+++..+..++.++..+|++++|...|.+
T Consensus 67 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~ 97 (281)
T 2c2l_A 67 LDGQSVKAHFFLGQCQLEMESYDEAIANLQR 97 (281)
T ss_dssp SCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 5555555555555555555555555554443
No 77
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.50 E-value=1.9e-13 Score=117.42 Aligned_cols=130 Identities=9% Similarity=-0.045 Sum_probs=106.0
Q ss_pred hHHHhccCcchHHHHHHHHhcccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhh-------
Q 026773 96 PTFTRRLFIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFT------- 168 (233)
Q Consensus 96 ~~~~r~~~~~~a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~------- 168 (233)
..+.+.+-...|...+.+++ +++|+++.+|..+|.++..+|++++|+..|+++++++|++.. .+..
T Consensus 107 ~~~~~~g~~~~A~~~~~~al--~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~-----~~~~~~~~~~~ 179 (365)
T 4eqf_A 107 ITQAENENEQAAIVALQRCL--ELQPNNLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKY-----LVKNKKGSPGL 179 (365)
T ss_dssp HHHHHTTCHHHHHHHHHHHH--HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHC-----C----------
T ss_pred HHHHHCCCHHHHHHHHHHHH--hcCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHHhCccchH-----HHhhhccchHH
Confidence 44455556677888888888 788999999999999999999999999999999988887541 1100
Q ss_pred ----------------------------hh--hhhhhhhhHHHHHHcCCcHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Q 026773 169 ----------------------------IS--IVGIILKKLIRVSHFNRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQ 218 (233)
Q Consensus 169 ----------------------------~~--~~~a~~~rG~al~~lGryeeAi~~f~kAL~lnP~d~e~~~~~~l~~a~ 218 (233)
+. -..++.++|.++..+|++++|++.|+++++++|+++..+..++.++..
T Consensus 180 ~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 259 (365)
T 4eqf_A 180 TRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLAN 259 (365)
T ss_dssp ---------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 00 256788899999999999999999999999999999988888999999
Q ss_pred cCCHHHHHHHHHhh
Q 026773 219 LYGVDEARNRFLEA 232 (233)
Q Consensus 219 Lg~~dEA~~~~l~~ 232 (233)
+|++++|+..+.++
T Consensus 260 ~g~~~~A~~~~~~a 273 (365)
T 4eqf_A 260 GDRSEEAVEAYTRA 273 (365)
T ss_dssp TTCHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHH
Confidence 99999999988764
No 78
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=99.49 E-value=3.9e-13 Score=95.44 Aligned_cols=97 Identities=14% Similarity=0.154 Sum_probs=89.1
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHHHcCCcHHHHHHHHHHHHc
Q 026773 122 REAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSHFNRFEEGAEQFRIDVAQ 201 (233)
Q Consensus 122 ~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~lGryeeAi~~f~kAL~l 201 (233)
+.+.++..+|.++...|++++|+..|+++++++|+++ ..++ ++|.++...|++++|++.+++++++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~-----~~~~---------~~a~~~~~~~~~~~A~~~~~~~~~~ 67 (118)
T 1elw_A 2 EQVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNH-----VLYS---------NRSAAYAKKGDYQKAYEDGCKTVDL 67 (118)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH-----HHHH---------HHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcH-----HHHH---------HHHHHHHhhccHHHHHHHHHHHHHh
Confidence 3578999999999999999999999999999999987 3433 5999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHhh
Q 026773 202 NPNDTEESIWCFLCEAQLYGVDEARNRFLEA 232 (233)
Q Consensus 202 nP~d~e~~~~~~l~~a~Lg~~dEA~~~~l~~ 232 (233)
+|++++.+...+.++..+|++++|...+.++
T Consensus 68 ~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~ 98 (118)
T 1elw_A 68 KPDWGKGYSRKAAALEFLNRFEEAKRTYEEG 98 (118)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CcccHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 9999999899999999999999999998764
No 79
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=99.49 E-value=4.5e-13 Score=101.51 Aligned_cols=96 Identities=11% Similarity=0.066 Sum_probs=88.7
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHHHcCCcHHHHHHHHHHHHcC
Q 026773 123 EAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSHFNRFEEGAEQFRIDVAQN 202 (233)
Q Consensus 123 ~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~lGryeeAi~~f~kAL~ln 202 (233)
.+.+|..+|.+++..|++++|+..|+++++++|+++ ..+. ++|.++..+|++++|++.|+++++++
T Consensus 12 ~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~-----~~~~---------~~a~~~~~~~~~~~A~~~~~~a~~~~ 77 (166)
T 1a17_A 12 RAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNA-----IYYG---------NRSLAYLRTECYGYALGDATRAIELD 77 (166)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCH-----HHHH---------HHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCh-----HHHH---------HHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 478899999999999999999999999999999887 3433 59999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHhh
Q 026773 203 PNDTEESIWCFLCEAQLYGVDEARNRFLEA 232 (233)
Q Consensus 203 P~d~e~~~~~~l~~a~Lg~~dEA~~~~l~~ 232 (233)
|++++.+...+.++..+|++++|...+.++
T Consensus 78 ~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a 107 (166)
T 1a17_A 78 KKYIKGYYRRAASNMALGKFRAALRDYETV 107 (166)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 999999999999999999999999998764
No 80
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.49 E-value=1.3e-13 Score=112.86 Aligned_cols=107 Identities=10% Similarity=0.090 Sum_probs=90.7
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhh------hhhhhhhhhHHHHHHcCCcHHHHHHH
Q 026773 122 REAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTI------SIVGIILKKLIRVSHFNRFEEGAEQF 195 (233)
Q Consensus 122 ~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~------~~~~a~~~rG~al~~lGryeeAi~~f 195 (233)
.+++.+..+|..++..|++++|++.|+++++++|+++. .+++.. ....+..++|.++..+|++++|++.|
T Consensus 2 ~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~----~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~ 77 (208)
T 3urz_A 2 QSVDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTE----MYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFY 77 (208)
T ss_dssp -CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHH----HHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChH----HHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 36788999999999999999999999999999998872 222200 00112233899999999999999999
Q ss_pred HHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhh
Q 026773 196 RIDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLEA 232 (233)
Q Consensus 196 ~kAL~lnP~d~e~~~~~~l~~a~Lg~~dEA~~~~l~~ 232 (233)
+++++++|++++.+..++.++..+|++++|...|.++
T Consensus 78 ~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 114 (208)
T 3urz_A 78 KELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKI 114 (208)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 9999999999999999999999999999999999875
No 81
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.49 E-value=3.4e-13 Score=100.37 Aligned_cols=104 Identities=14% Similarity=0.178 Sum_probs=93.1
Q ss_pred cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHHHcCCcHHHHHHHHH
Q 026773 118 NNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSHFNRFEEGAEQFRI 197 (233)
Q Consensus 118 ~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~lGryeeAi~~f~k 197 (233)
..+|.++.++..+|..++..|++++|+..|+++++++|++.. ... ++.++|.++..+|++++|++.|++
T Consensus 22 ~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~---~~~--------~~~~~a~~~~~~~~~~~A~~~~~~ 90 (148)
T 2dba_A 22 TPGASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQD---QAV--------LHRNRAACHLKLEDYDKAETEASK 90 (148)
T ss_dssp CTTCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHH---HHH--------HHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchH---HHH--------HHHHHHHHHHHHccHHHHHHHHHH
Confidence 577999999999999999999999999999999999998620 001 234699999999999999999999
Q ss_pred HHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhh
Q 026773 198 DVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLEA 232 (233)
Q Consensus 198 AL~lnP~d~e~~~~~~l~~a~Lg~~dEA~~~~l~~ 232 (233)
+++++|+++..+..++.++..+|++++|...+.++
T Consensus 91 ~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a 125 (148)
T 2dba_A 91 AIEKDGGDVKALYRRSQALEKLGRLDQAVLDLQRC 125 (148)
T ss_dssp HHHHTSCCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHhhCccCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99999999999999999999999999999998764
No 82
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=99.49 E-value=2.5e-14 Score=132.25 Aligned_cols=126 Identities=10% Similarity=0.143 Sum_probs=102.7
Q ss_pred chHHHHHHHHhcccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccch-hhhhhhhhhhhhhhHHHHH
Q 026773 105 PSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGA-YRFTISIVGIILKKLIRVS 183 (233)
Q Consensus 105 ~~a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~-y~~~~~~~~a~~~rG~al~ 183 (233)
..|...|..++ +.+|+++.+|..+|.+++.+|+|++|+..|++||+++|++....++. .-.....+.+++++|.++.
T Consensus 251 ~~A~~~~~~~~--~~~~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~ 328 (457)
T 1kt0_A 251 EKAKESWEMDT--KEKLEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYL 328 (457)
T ss_dssp ECCCCGGGSCH--HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCcchhhcCH--HHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666555 67789999999999999999999999999999999999884100000 0000011346678999999
Q ss_pred HcCCcHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhh
Q 026773 184 HFNRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLEA 232 (233)
Q Consensus 184 ~lGryeeAi~~f~kAL~lnP~d~e~~~~~~l~~a~Lg~~dEA~~~~l~~ 232 (233)
.+|+|++|+++|+++++++|+++..++.++.|+..+|++++|+..|.++
T Consensus 329 ~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~a 377 (457)
T 1kt0_A 329 KLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKV 377 (457)
T ss_dssp HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999875
No 83
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.49 E-value=5.3e-13 Score=110.76 Aligned_cols=114 Identities=17% Similarity=0.151 Sum_probs=104.1
Q ss_pred CcchHHHHHHHHhcccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHH
Q 026773 103 FIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRV 182 (233)
Q Consensus 103 ~~~~a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al 182 (233)
-...|...+..++ +.+|+++.++..+|.++...|++++|++.++++++++|+++ ..+. ++|.++
T Consensus 153 ~~~~A~~~~~~~~--~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~-----~~~~---------~l~~~~ 216 (327)
T 3cv0_A 153 EYRECRTLLHAAL--EMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDA-----QLWN---------KLGATL 216 (327)
T ss_dssp HHHHHHHHHHHHH--HHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH-----HHHH---------HHHHHH
T ss_pred cHHHHHHHHHHHH--hhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcH-----HHHH---------HHHHHH
Confidence 4467788888888 88999999999999999999999999999999999999887 3333 599999
Q ss_pred HHcCCcHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhh
Q 026773 183 SHFNRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLEA 232 (233)
Q Consensus 183 ~~lGryeeAi~~f~kAL~lnP~d~e~~~~~~l~~a~Lg~~dEA~~~~l~~ 232 (233)
...|++++|++.|+++++++|++++.+...+.++..+|++++|...+.++
T Consensus 217 ~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 266 (327)
T 3cv0_A 217 ANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLAAKQLVRA 266 (327)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 99999999999999999999999999888999999999999999998764
No 84
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=99.49 E-value=7.1e-13 Score=94.71 Aligned_cols=101 Identities=20% Similarity=0.211 Sum_probs=88.4
Q ss_pred cCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHHHcCCcHHHHHHHH
Q 026773 118 NNNSRE-AVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSHFNRFEEGAEQFR 196 (233)
Q Consensus 118 ~l~P~~-a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~lGryeeAi~~f~ 196 (233)
+++|.+ +.+|..+|.++...|++++|++.|+++++++|++. ..++ .+|.++...|++++|++.|+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~-----~~~~---------~la~~~~~~~~~~~A~~~~~ 67 (125)
T 1na0_A 2 AMDPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNA-----EAWY---------NLGNAYYKQGDYDEAIEYYQ 67 (125)
T ss_dssp -----CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH-----HHHH---------HHHHHHHHTTCHHHHHHHHH
T ss_pred CCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcH-----HHHH---------HHHHHHHHhCCHHHHHHHHH
Confidence 467776 89999999999999999999999999999999877 3433 59999999999999999999
Q ss_pred HHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhh
Q 026773 197 IDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLEA 232 (233)
Q Consensus 197 kAL~lnP~d~e~~~~~~l~~a~Lg~~dEA~~~~l~~ 232 (233)
++++++|+++..+...+.++..+|++++|...+.++
T Consensus 68 ~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~ 103 (125)
T 1na0_A 68 KALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKA 103 (125)
T ss_dssp HHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 999999999998888889999999999999998764
No 85
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=99.48 E-value=1.8e-13 Score=98.87 Aligned_cols=98 Identities=13% Similarity=0.114 Sum_probs=87.2
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHHHcCCcHHHHHHHHHHHH
Q 026773 121 SREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSHFNRFEEGAEQFRIDVA 200 (233)
Q Consensus 121 P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~lGryeeAi~~f~kAL~ 200 (233)
|..+.+|..+|.++...|++++|+..|+++++++|+++ ..+. ++|.++...|++++|++.|+++++
T Consensus 1 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~-----~~~~---------~la~~~~~~~~~~~A~~~~~~~~~ 66 (131)
T 1elr_A 1 GKQALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNM-----TYIT---------NQAAVYFEKGDYNKCRELCEKAIE 66 (131)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH-----HHHH---------HHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccH-----HHHH---------HHHHHHHHhccHHHHHHHHHHHHh
Confidence 34578999999999999999999999999999999887 3333 599999999999999999999999
Q ss_pred cCCCC-------HHHHHHHHHHHHHcCCHHHHHHHHHhh
Q 026773 201 QNPND-------TEESIWCFLCEAQLYGVDEARNRFLEA 232 (233)
Q Consensus 201 lnP~d-------~e~~~~~~l~~a~Lg~~dEA~~~~l~~ 232 (233)
++|++ +..+...+.++..+|++++|...+.++
T Consensus 67 ~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~ 105 (131)
T 1elr_A 67 VGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKS 105 (131)
T ss_dssp HHHHSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hccccchhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 99877 777788888899999999999998764
No 86
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.48 E-value=2.3e-13 Score=115.75 Aligned_cols=121 Identities=15% Similarity=0.073 Sum_probs=106.7
Q ss_pred hhHHHhccCcchHHHHHHHHhcccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhh
Q 026773 95 APTFTRRLFIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGI 174 (233)
Q Consensus 95 ~~~~~r~~~~~~a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a 174 (233)
...+.+.+-..+|...+..++ +++|+++.+|..+|.++..+|++++|++.|+++++++|+++ ..+.
T Consensus 224 ~~~~~~~g~~~~A~~~~~~al--~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~-----~~~~------- 289 (368)
T 1fch_A 224 GVLFNLSGEYDKAVDCFTAAL--SVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYI-----RSRY------- 289 (368)
T ss_dssp HHHHHHTTCHHHHHHHHHHHH--HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH-----HHHH-------
T ss_pred HHHHHHcCCHHHHHHHHHHHH--HhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH-----HHHH-------
Confidence 344555566778888888888 88999999999999999999999999999999999999887 3433
Q ss_pred hhhhHHHHHHcCCcHHHHHHHHHHHHcCCCC-----------HHHHHHHHHHHHHcCCHHHHHHHHHh
Q 026773 175 ILKKLIRVSHFNRFEEGAEQFRIDVAQNPND-----------TEESIWCFLCEAQLYGVDEARNRFLE 231 (233)
Q Consensus 175 ~~~rG~al~~lGryeeAi~~f~kAL~lnP~d-----------~e~~~~~~l~~a~Lg~~dEA~~~~l~ 231 (233)
++|.++..+|++++|++.|+++++++|++ +..+..++.++..+|+.++|...+.+
T Consensus 290 --~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 355 (368)
T 1fch_A 290 --NLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADAR 355 (368)
T ss_dssp --HHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTT
T ss_pred --HHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHH
Confidence 59999999999999999999999999998 78888888999999999999987653
No 87
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.48 E-value=1e-13 Score=128.27 Aligned_cols=119 Identities=12% Similarity=0.054 Sum_probs=106.5
Q ss_pred HHHhccCc-chHHHHHHHHhcccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhh
Q 026773 97 TFTRRLFI-PSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGII 175 (233)
Q Consensus 97 ~~~r~~~~-~~a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~ 175 (233)
.+.+.+-. .+|...+.+++ +++|+++++|..+|.++..+|++++|++.|++|++++|+ + ..+.
T Consensus 111 ~~~~~g~~~~~A~~~~~~al--~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~-----~~~~-------- 174 (474)
T 4abn_A 111 ALNVTPDYSPEAEVLLSKAV--KLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKN-K-----VSLQ-------- 174 (474)
T ss_dssp HHTSSSSCCHHHHHHHHHHH--HHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCCC-H-----HHHH--------
T ss_pred HHHhccccHHHHHHHHHHHH--hhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-H-----HHHH--------
Confidence 34444445 78999999999 899999999999999999999999999999999999998 4 2333
Q ss_pred hhhHHHHHHc---------CCcHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHc--------CCHHHHHHHHHhh
Q 026773 176 LKKLIRVSHF---------NRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQL--------YGVDEARNRFLEA 232 (233)
Q Consensus 176 ~~rG~al~~l---------GryeeAi~~f~kAL~lnP~d~e~~~~~~l~~a~L--------g~~dEA~~~~l~~ 232 (233)
++|.++..+ |++++|++.|+++++++|+++..+..++.++..+ |++++|...|.++
T Consensus 175 -~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~a 247 (474)
T 4abn_A 175 -NLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQA 247 (474)
T ss_dssp -HHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred -HHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHH
Confidence 599999999 9999999999999999999999999999999888 9999999998764
No 88
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.48 E-value=6.2e-13 Score=104.54 Aligned_cols=122 Identities=8% Similarity=0.012 Sum_probs=99.3
Q ss_pred hHHHhc-cCcchHHHHHHHHhcccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhh
Q 026773 96 PTFTRR-LFIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGI 174 (233)
Q Consensus 96 ~~~~r~-~~~~~a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a 174 (233)
..+.+. +-...|...+..++....+|.++.++..+|.++...|++++|++.|+++++++|+++ ..+.
T Consensus 84 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-----~~~~------- 151 (225)
T 2vq2_A 84 WFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFP-----PAFK------- 151 (225)
T ss_dssp HHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCH-----HHHH-------
T ss_pred HHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCc-----hHHH-------
Confidence 344555 666778888888882116677889999999999999999999999999999999877 3433
Q ss_pred hhhhHHHHHHcCCcHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHh
Q 026773 175 ILKKLIRVSHFNRFEEGAEQFRIDVAQNP-NDTEESIWCFLCEAQLYGVDEARNRFLE 231 (233)
Q Consensus 175 ~~~rG~al~~lGryeeAi~~f~kAL~lnP-~d~e~~~~~~l~~a~Lg~~dEA~~~~l~ 231 (233)
.+|.++...|++++|++.++++++++| ++++.+.....+....|+.++|...+..
T Consensus 152 --~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 207 (225)
T 2vq2_A 152 --ELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQ 207 (225)
T ss_dssp --HHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred --HHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHH
Confidence 489999999999999999999999999 8888765556667788999988877654
No 89
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.47 E-value=4.1e-13 Score=111.38 Aligned_cols=119 Identities=8% Similarity=0.086 Sum_probs=105.0
Q ss_pred HHhccCcchHHHHHHHHhcccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhh
Q 026773 98 FTRRLFIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILK 177 (233)
Q Consensus 98 ~~r~~~~~~a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~ 177 (233)
+.+.+-...|...+..++ +++|+++.+|..+|.++...|++++|++.|+++++++|+++ ..++ +
T Consensus 182 ~~~~~~~~~A~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~-----~~~~---------~ 245 (327)
T 3cv0_A 182 YNLSNNYDSAAANLRRAV--ELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYV-----RVMY---------N 245 (327)
T ss_dssp HHHTTCHHHHHHHHHHHH--HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH-----HHHH---------H
T ss_pred HHHhccHHHHHHHHHHHH--HhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCH-----HHHH---------H
Confidence 344455677788888888 88999999999999999999999999999999999999887 3434 4
Q ss_pred hHHHHHHcCCcHHHHHHHHHHHHcCCC------------CHHHHHHHHHHHHHcCCHHHHHHHHHhh
Q 026773 178 KLIRVSHFNRFEEGAEQFRIDVAQNPN------------DTEESIWCFLCEAQLYGVDEARNRFLEA 232 (233)
Q Consensus 178 rG~al~~lGryeeAi~~f~kAL~lnP~------------d~e~~~~~~l~~a~Lg~~dEA~~~~l~~ 232 (233)
+|.++..+|++++|++.|+++++++|+ +++.+...+.++..+|++++|...+.++
T Consensus 246 l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 312 (327)
T 3cv0_A 246 MAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQN 312 (327)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCC
T ss_pred HHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 999999999999999999999999999 7888888889999999999999987653
No 90
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=99.47 E-value=5.8e-14 Score=131.07 Aligned_cols=117 Identities=13% Similarity=0.146 Sum_probs=100.6
Q ss_pred HHhccCcchHHHHHHHHhcccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhh
Q 026773 98 FTRRLFIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILK 177 (233)
Q Consensus 98 ~~r~~~~~~a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~ 177 (233)
+.+.+-..+|...|.+++ +++|+++.+|.++|.++..+|++++|+++|++|++++|+++ ..++ +
T Consensus 16 ~~~~g~~~~A~~~~~~Al--~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~-----~~~~---------~ 79 (477)
T 1wao_1 16 YFKAKDYENAIKFYSQAI--ELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYI-----KGYY---------R 79 (477)
T ss_dssp TTTTTCHHHHHHHHHHHH--HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCH-----HHHH---------H
T ss_pred HHHhCCHHHHHHHHHHHH--HhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCH-----HHHH---------H
Confidence 344455678899999999 89999999999999999999999999999999999999987 3433 5
Q ss_pred hHHHHHHcCCcHHHHHHHHHHHHcCCCCHHHHHHHHHH--HHHcCCHHHHHHHHH
Q 026773 178 KLIRVSHFNRFEEGAEQFRIDVAQNPNDTEESIWCFLC--EAQLYGVDEARNRFL 230 (233)
Q Consensus 178 rG~al~~lGryeeAi~~f~kAL~lnP~d~e~~~~~~l~--~a~Lg~~dEA~~~~l 230 (233)
+|.++..+|++++|++.|+++++++|++++.+.+.+.+ +.++|++++|...+.
T Consensus 80 lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 80 RAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 99999999999999999999999999999988888888 667899999998876
No 91
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.47 E-value=7.7e-13 Score=107.36 Aligned_cols=121 Identities=7% Similarity=0.002 Sum_probs=103.0
Q ss_pred hHHHhccCcchHHHHHHHHhccc--CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhh
Q 026773 96 PTFTRRLFIPSVSGIWDALTGGN--NNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVG 173 (233)
Q Consensus 96 ~~~~r~~~~~~a~~i~~~~i~~~--l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~ 173 (233)
..+.+.+-..+|...+..++ + .+|.++.++..+|.++..+|++++|++.|+++++++|+++ ..++
T Consensus 113 ~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~-----~~~~------ 179 (252)
T 2ho1_A 113 GFLYEQKRYEEAYQRLLEAS--QDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQP-----SVAL------ 179 (252)
T ss_dssp HHHHHTTCHHHHHHHHHHHT--TCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCH-----HHHH------
T ss_pred HHHHHHhHHHHHHHHHHHHH--hCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccH-----HHHH------
Confidence 34445556667777777777 5 7788899999999999999999999999999999999876 3333
Q ss_pred hhhhhHHHHHHcCCcHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhh
Q 026773 174 IILKKLIRVSHFNRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLEA 232 (233)
Q Consensus 174 a~~~rG~al~~lGryeeAi~~f~kAL~lnP~d~e~~~~~~l~~a~Lg~~dEA~~~~l~~ 232 (233)
.+|.++...|++++|++.|+++++.+|++++.+...+.+...+|++++|...+.++
T Consensus 180 ---~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~ 235 (252)
T 2ho1_A 180 ---EMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQL 235 (252)
T ss_dssp ---HHHHHHHHTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred ---HHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 59999999999999999999999999999998888888899999999999988764
No 92
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.47 E-value=5.8e-13 Score=111.27 Aligned_cols=121 Identities=13% Similarity=0.151 Sum_probs=105.9
Q ss_pred hHHHhccCcchHHHHHHHHhcccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhh
Q 026773 96 PTFTRRLFIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGII 175 (233)
Q Consensus 96 ~~~~r~~~~~~a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~ 175 (233)
..+-+.+-..+|...+..++ +.+|+++.++..+|.++...|++++|+..|+++++++|+++ ..+.
T Consensus 11 ~~~~~~g~~~~A~~~~~~~l--~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~-----~~~~-------- 75 (359)
T 3ieg_A 11 KKLLAAGQLADALSQFHAAV--DGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFT-----AARL-------- 75 (359)
T ss_dssp HHHHHTTCHHHHHHHHHHHH--HHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCH-----HHHH--------
T ss_pred HHHHHcCCHHHHHHHHHHHH--hhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcc-----hHHH--------
Confidence 34455566788999999999 89999999999999999999999999999999999999887 3433
Q ss_pred hhhHHHHHHcCCcHHHHHHHHHHHHcCC---CCHHHHHHH------------HHHHHHcCCHHHHHHHHHhh
Q 026773 176 LKKLIRVSHFNRFEEGAEQFRIDVAQNP---NDTEESIWC------------FLCEAQLYGVDEARNRFLEA 232 (233)
Q Consensus 176 ~~rG~al~~lGryeeAi~~f~kAL~lnP---~d~e~~~~~------------~l~~a~Lg~~dEA~~~~l~~ 232 (233)
.+|.++...|++++|++.|+++++++| ++++.+... +.+....|++++|...+.++
T Consensus 76 -~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~ 146 (359)
T 3ieg_A 76 -QRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKI 146 (359)
T ss_dssp -HHHHHHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred -HHHHHHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 599999999999999999999999999 888776655 56778999999999988764
No 93
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.47 E-value=2.7e-13 Score=108.79 Aligned_cols=130 Identities=9% Similarity=0.000 Sum_probs=107.4
Q ss_pred hHHHhccCcchHHHHHHHHhcccCCCCC-------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhh
Q 026773 96 PTFTRRLFIPSVSGIWDALTGGNNNSRE-------AVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFT 168 (233)
Q Consensus 96 ~~~~r~~~~~~a~~i~~~~i~~~l~P~~-------a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~ 168 (233)
..+.+.+-...|...+..++ +++|++ +.+|..+|.++..+|++++|++.|+++++++|+.. .+.-.
T Consensus 46 ~~~~~~~~~~~A~~~~~~a~--~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~-----~~~~~ 118 (258)
T 3uq3_A 46 AAEYEKGEYETAISTLNDAV--EQGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRTAD-----ILTKL 118 (258)
T ss_dssp HHHHHTTCHHHHHHHHHHHH--HHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHH-----HHHHH
T ss_pred HHHHHcccHHHHHHHHHHHH--HhCcccccchHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCchhH-----HHHHH
Confidence 34445556678888999888 677766 89999999999999999999999999999877521 00000
Q ss_pred -----------------hhhhhhhhhhHHHHHHcCCcHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHh
Q 026773 169 -----------------ISIVGIILKKLIRVSHFNRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLE 231 (233)
Q Consensus 169 -----------------~~~~~a~~~rG~al~~lGryeeAi~~f~kAL~lnP~d~e~~~~~~l~~a~Lg~~dEA~~~~l~ 231 (233)
.....++.++|.++...|++++|++.|+++++++|+++..+..++.++..+|++++|...+.+
T Consensus 119 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 198 (258)
T 3uq3_A 119 RNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNK 198 (258)
T ss_dssp HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 011446678999999999999999999999999999999999999999999999999999876
Q ss_pred h
Q 026773 232 A 232 (233)
Q Consensus 232 ~ 232 (233)
+
T Consensus 199 a 199 (258)
T 3uq3_A 199 A 199 (258)
T ss_dssp H
T ss_pred H
Confidence 4
No 94
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.46 E-value=9.3e-14 Score=110.16 Aligned_cols=129 Identities=9% Similarity=-0.014 Sum_probs=103.8
Q ss_pred hHHHhccCcchHHHHHHHHhcccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhh-------
Q 026773 96 PTFTRRLFIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFT------- 168 (233)
Q Consensus 96 ~~~~r~~~~~~a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~------- 168 (233)
..+.+.+-...|...+..++ +++|+++.+|..+|.++..+|++++|+..|+++++++| ++ .+...
T Consensus 14 ~~~~~~g~~~~A~~~~~~al--~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p-~~-----~~~~~~~~~~~~ 85 (176)
T 2r5s_A 14 SELLQQGEHAQALNVIQTLS--DELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ-DN-----SYKSLIAKLELH 85 (176)
T ss_dssp HHHHHTTCHHHHHHHHHTSC--HHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC-CH-----HHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHH--HHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC-Ch-----HHHHHHHHHHHH
Confidence 44555666678899999888 89999999999999999999999999999999999999 65 21110
Q ss_pred -------------------hhhhhhhhhhHHHHHHcCCcHHHHHHHHHHHHcCCCC--HHHHHHHHHHHHHcCCHHHHHH
Q 026773 169 -------------------ISIVGIILKKLIRVSHFNRFEEGAEQFRIDVAQNPND--TEESIWCFLCEAQLYGVDEARN 227 (233)
Q Consensus 169 -------------------~~~~~a~~~rG~al~~lGryeeAi~~f~kAL~lnP~d--~e~~~~~~l~~a~Lg~~dEA~~ 227 (233)
+.-..+++++|.++...|++++|++.|+++++++|+. +..+..++.++..+|+.++|..
T Consensus 86 ~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~ 165 (176)
T 2r5s_A 86 QQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIAS 165 (176)
T ss_dssp HHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHH
T ss_pred hhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHH
Confidence 0115677788999999999999999999999998875 4466677778888888888888
Q ss_pred HHHhh
Q 026773 228 RFLEA 232 (233)
Q Consensus 228 ~~l~~ 232 (233)
.|.++
T Consensus 166 ~y~~a 170 (176)
T 2r5s_A 166 KYRRQ 170 (176)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 87653
No 95
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=99.46 E-value=8.2e-14 Score=111.90 Aligned_cols=120 Identities=9% Similarity=0.115 Sum_probs=99.1
Q ss_pred chHHHHHHHHhcccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhh--------hhhhhhh
Q 026773 105 PSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTI--------SIVGIIL 176 (233)
Q Consensus 105 ~~a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~--------~~~~a~~ 176 (233)
+.+..+|+... +..+..+..+..+|.+++..|+|++|+..|++|++++|+++. + ... -.+.++.
T Consensus 21 ~~~~~~~~~~~--~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~-----~-~~~~~~~~~~~~~~~~~~ 92 (198)
T 2fbn_A 21 GAKKSIYDYTD--EEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEE-----W-DDQILLDKKKNIEISCNL 92 (198)
T ss_dssp -CCCSGGGCCH--HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTT-----C-CCHHHHHHHHHHHHHHHH
T ss_pred cccCchhhCCH--HHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccc-----c-chhhHHHHHHHHHHHHHH
Confidence 44445554433 344667889999999999999999999999999999998771 1 100 0125677
Q ss_pred hhHHHHHHcCCcHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhh
Q 026773 177 KKLIRVSHFNRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLEA 232 (233)
Q Consensus 177 ~rG~al~~lGryeeAi~~f~kAL~lnP~d~e~~~~~~l~~a~Lg~~dEA~~~~l~~ 232 (233)
++|.++..+|++++|++.|+++++++|+++..++.++.++..+|++++|...|.++
T Consensus 93 ~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~a 148 (198)
T 2fbn_A 93 NLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKA 148 (198)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 89999999999999999999999999999999999999999999999999998764
No 96
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=99.46 E-value=4.5e-13 Score=93.00 Aligned_cols=88 Identities=18% Similarity=0.225 Sum_probs=75.9
Q ss_pred CCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHHHcCCcHHHHHHHHH
Q 026773 119 NNS-REAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSHFNRFEEGAEQFRI 197 (233)
Q Consensus 119 l~P-~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~lGryeeAi~~f~k 197 (233)
++| +++.++..+|.++...|++++|+..|++|++++|+++ ..++ ++|.++...|++++|++.|++
T Consensus 3 ~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~-----~~~~---------~l~~~~~~~~~~~~A~~~~~~ 68 (91)
T 1na3_A 3 MDPGNSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNA-----EAWY---------NLGNAYYKQGDYDEAIEYYQK 68 (91)
T ss_dssp ---CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH-----HHHH---------HHHHHHHHTTCHHHHHHHHHH
T ss_pred CcccccHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCH-----HHHH---------HHHHHHHHHhhHHHHHHHHHH
Confidence 445 5789999999999999999999999999999999887 3433 599999999999999999999
Q ss_pred HHHcCCCCHHHHHHHHHHHHHcC
Q 026773 198 DVAQNPNDTEESIWCFLCEAQLY 220 (233)
Q Consensus 198 AL~lnP~d~e~~~~~~l~~a~Lg 220 (233)
+++++|++++.+..++.++..+|
T Consensus 69 a~~~~p~~~~~~~~l~~~~~~~g 91 (91)
T 1na3_A 69 ALELDPNNAEAKQNLGNAKQKQG 91 (91)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHHC
T ss_pred HHhcCCCCHHHHHHHHHHHHhcC
Confidence 99999999998877777766543
No 97
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=99.45 E-value=1.2e-12 Score=96.43 Aligned_cols=98 Identities=16% Similarity=0.053 Sum_probs=86.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHHHcCCcHHHHHHHHHHHHcCC
Q 026773 124 AVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSHFNRFEEGAEQFRIDVAQNP 203 (233)
Q Consensus 124 a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~lGryeeAi~~f~kAL~lnP 203 (233)
+++++.+|.+++..|++++|++.|+++++.+|+++. ....++. +|.+++..|++++|++.|+++++.+|
T Consensus 2 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~--~~~~~~~---------lg~~~~~~~~~~~A~~~~~~~~~~~p 70 (129)
T 2xev_A 2 ARTAYNVAFDALKNGKYDDASQLFLSFLELYPNGVY--TPNALYW---------LGESYYATRNFQLAEAQFRDLVSRYP 70 (129)
T ss_dssp -CCHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTT--HHHHHHH---------HHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred cHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcc--cHHHHHH---------HHHHHHHhccHHHHHHHHHHHHHHCC
Confidence 456889999999999999999999999999999871 0013333 89999999999999999999999999
Q ss_pred CC---HHHHHHHHHHHHHcCCHHHHHHHHHhh
Q 026773 204 ND---TEESIWCFLCEAQLYGVDEARNRFLEA 232 (233)
Q Consensus 204 ~d---~e~~~~~~l~~a~Lg~~dEA~~~~l~~ 232 (233)
++ ++.+.+++.|+..+|++++|...|.++
T Consensus 71 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 102 (129)
T 2xev_A 71 THDKAAGGLLKLGLSQYGEGKNTEAQQTLQQV 102 (129)
T ss_dssp TSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CCcccHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99 888899999999999999999998764
No 98
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.45 E-value=2.3e-13 Score=117.31 Aligned_cols=129 Identities=8% Similarity=-0.036 Sum_probs=91.0
Q ss_pred hHHHhccCcchHHHHHHHHhcccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhh-------
Q 026773 96 PTFTRRLFIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFT------- 168 (233)
Q Consensus 96 ~~~~r~~~~~~a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~------- 168 (233)
..+.+.+-...|...+.+++ +++|++++++..+|.++..+|++++|++.++++++++|+.. .....
T Consensus 125 ~~~~~~g~~~~A~~~~~~al--~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~-----~~~~~~~~~l~~ 197 (287)
T 3qou_A 125 MQLMQESNYTDALPLLXDAW--QLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTR-----YQGLVAQIELLX 197 (287)
T ss_dssp HHHHHTTCHHHHHHHHHHHH--HHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHH-----HHHHHHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHH--HhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchH-----HHHHHHHHHHHh
Confidence 34455566778888999988 89999999999999999999999999999888888888433 11111
Q ss_pred ------------------hhhhhhhhhhHHHHHHcCCcHHHHHHHHHHHHcCCCC--HHHHHHHHHHHHHcCCHHHHHHH
Q 026773 169 ------------------ISIVGIILKKLIRVSHFNRFEEGAEQFRIDVAQNPND--TEESIWCFLCEAQLYGVDEARNR 228 (233)
Q Consensus 169 ------------------~~~~~a~~~rG~al~~lGryeeAi~~f~kAL~lnP~d--~e~~~~~~l~~a~Lg~~dEA~~~ 228 (233)
+.-.++++++|.++...|++++|++.|+++++++|++ ++.+..++.++..+|+.++|...
T Consensus 198 ~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~a~~~ 277 (287)
T 3qou_A 198 QAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGDALASX 277 (287)
T ss_dssp HHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTCHHHHH
T ss_pred hcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCCcHHHH
Confidence 0013455566777777777777777777777777666 55555555666666666666666
Q ss_pred HHh
Q 026773 229 FLE 231 (233)
Q Consensus 229 ~l~ 231 (233)
+.+
T Consensus 278 ~r~ 280 (287)
T 3qou_A 278 YRR 280 (287)
T ss_dssp HHH
T ss_pred HHH
Confidence 544
No 99
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.45 E-value=1.3e-12 Score=116.72 Aligned_cols=117 Identities=15% Similarity=0.109 Sum_probs=104.0
Q ss_pred hccCcchHHHHHHHHhcccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhH
Q 026773 100 RRLFIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKL 179 (233)
Q Consensus 100 r~~~~~~a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG 179 (233)
+.+-...|...+..++ +++|+++.+|..+|.++...|++++|++.|+++++++|+++ ..+. ++|
T Consensus 288 ~~~~~~~A~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~-----~~~~---------~la 351 (537)
T 3fp2_A 288 DKENSQEFFKFFQKAV--DLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENV-----YPYI---------QLA 351 (537)
T ss_dssp CSSCCHHHHHHHHHHH--HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCS-----HHHH---------HHH
T ss_pred HhcCHHHHHHHHHHHh--ccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCH-----HHHH---------HHH
Confidence 3344567778888888 88999999999999999999999999999999999999988 3433 499
Q ss_pred HHHHHcCCcHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhh
Q 026773 180 IRVSHFNRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLEA 232 (233)
Q Consensus 180 ~al~~lGryeeAi~~f~kAL~lnP~d~e~~~~~~l~~a~Lg~~dEA~~~~l~~ 232 (233)
.++...|++++|++.|+++++++|++++.+.+++.++..+|++++|...+.++
T Consensus 352 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 404 (537)
T 3fp2_A 352 CLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIA 404 (537)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999988764
No 100
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.45 E-value=3e-13 Score=125.08 Aligned_cols=120 Identities=11% Similarity=0.032 Sum_probs=104.8
Q ss_pred hHHHhccCcchHHHHHHHHhcccCCCCCHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHhhCCCCCCCccchhh
Q 026773 96 PTFTRRLFIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQ---------GDVVGSVAEFDKAIELDPRQKISGKGAYR 166 (233)
Q Consensus 96 ~~~~r~~~~~~a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~l---------GdyeeAIadfdkAIeLdP~~~~~~~~~y~ 166 (233)
..+.+.+-..+|...|.+++ +++|+ +.++.++|.++..+ |++++|++.|++|++++|+++ ..+
T Consensus 145 ~~~~~~g~~~~A~~~~~~al--~~~p~-~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~-----~~~ 216 (474)
T 4abn_A 145 EVYWKKGDVTSAHTCFSGAL--THCKN-KVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDG-----RSW 216 (474)
T ss_dssp HHHHHHTCHHHHHHHHHHHH--TTCCC-HHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCH-----HHH
T ss_pred HHHHHcCCHHHHHHHHHHHH--hhCCC-HHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCH-----HHH
Confidence 44455556677888888888 89999 89999999999999 999999999999999999988 333
Q ss_pred hhhhhhhhhhhhHHHHHHc--------CCcHHHHHHHHHHHHcCC---CCHHHHHHHHHHHHHcCCHHHHHHHHHhh
Q 026773 167 FTISIVGIILKKLIRVSHF--------NRFEEGAEQFRIDVAQNP---NDTEESIWCFLCEAQLYGVDEARNRFLEA 232 (233)
Q Consensus 167 ~~~~~~~a~~~rG~al~~l--------GryeeAi~~f~kAL~lnP---~d~e~~~~~~l~~a~Lg~~dEA~~~~l~~ 232 (233)
. ++|.++..+ |++++|++.|+++++++| ++++.+..++.++..+|++++|...|.++
T Consensus 217 ~---------~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 284 (474)
T 4abn_A 217 Y---------ILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQA 284 (474)
T ss_dssp H---------HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred H---------HHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3 589999998 999999999999999999 89998888999999999999999988764
No 101
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.44 E-value=9.7e-13 Score=108.38 Aligned_cols=124 Identities=13% Similarity=0.009 Sum_probs=101.4
Q ss_pred hHHHhccCcchHHHHHHHHhcccCCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhh
Q 026773 96 PTFTRRLFIPSVSGIWDALTGGNNNSRE---AVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIV 172 (233)
Q Consensus 96 ~~~~r~~~~~~a~~i~~~~i~~~l~P~~---a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~ 172 (233)
..+-+.+-...|...++.++ +..|++ +.+++.+|.+++.+|++++|++.|+++++++|+++ .. .
T Consensus 12 ~~~~~~g~~~~A~~~~~~~~--~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~-----~~------~ 78 (225)
T 2yhc_A 12 QQKLQDGNWRQAITQLEALD--NRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHP-----NI------D 78 (225)
T ss_dssp HHHHHHTCHHHHHHHHHHHH--HHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCT-----TH------H
T ss_pred HHHHHcCCHHHHHHHHHHHH--HhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCC-----cH------H
Confidence 34555566788999999999 777876 48999999999999999999999999999999987 21 1
Q ss_pred hhhhhhHHHHHH------------------cCCcHHHHHHHHHHHHcCCCCHHHH-----------------HHHHHHHH
Q 026773 173 GIILKKLIRVSH------------------FNRFEEGAEQFRIDVAQNPNDTEES-----------------IWCFLCEA 217 (233)
Q Consensus 173 ~a~~~rG~al~~------------------lGryeeAi~~f~kAL~lnP~d~e~~-----------------~~~~l~~a 217 (233)
.+++.+|.+++. .|++++|++.|+++++.+|+++... ...+.++.
T Consensus 79 ~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~ 158 (225)
T 2yhc_A 79 YVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYT 158 (225)
T ss_dssp HHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 133457888876 6799999999999999999987543 34556677
Q ss_pred HcCCHHHHHHHHHhh
Q 026773 218 QLYGVDEARNRFLEA 232 (233)
Q Consensus 218 ~Lg~~dEA~~~~l~~ 232 (233)
+.|++++|+..|.++
T Consensus 159 ~~~~~~~A~~~~~~~ 173 (225)
T 2yhc_A 159 ERGAWVAVVNRVEGM 173 (225)
T ss_dssp HHTCHHHHHHHHHHH
T ss_pred HcCcHHHHHHHHHHH
Confidence 899999999998764
No 102
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.44 E-value=2.8e-13 Score=110.86 Aligned_cols=121 Identities=9% Similarity=0.054 Sum_probs=99.0
Q ss_pred hHHHhccCcchHHHHHHHHhcccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhh
Q 026773 96 PTFTRRLFIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGII 175 (233)
Q Consensus 96 ~~~~r~~~~~~a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~ 175 (233)
..+.+.+-...|...+..++ +++|+++.+|..+|.++..+|++++|++.|+++++++|+++ ..++
T Consensus 82 ~~~~~~~~~~~A~~~~~~a~--~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~-----~~~~-------- 146 (272)
T 3u4t_A 82 KILMKKGQDSLAIQQYQAAV--DRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDP-----KVFY-------- 146 (272)
T ss_dssp HHHHHTTCHHHHHHHHHHHH--HHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCH-----HHHH--------
T ss_pred HHHHHcccHHHHHHHHHHHH--hcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcH-----HHHH--------
Confidence 34445556677888888888 88999999999999999999999999999999999999887 3333
Q ss_pred hhhHHHHHHcCCcHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCC---HHHHHHHHHhh
Q 026773 176 LKKLIRVSHFNRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQLYG---VDEARNRFLEA 232 (233)
Q Consensus 176 ~~rG~al~~lGryeeAi~~f~kAL~lnP~d~e~~~~~~l~~a~Lg~---~dEA~~~~l~~ 232 (233)
++|...+..+++++|++.|+++++++|+++..+.+++.+...+|+ +++|...+.++
T Consensus 147 -~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a 205 (272)
T 3u4t_A 147 -ELGQAYYYNKEYVKADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKL 205 (272)
T ss_dssp -HHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHH
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHH
Confidence 488566666799999999999999999999888888888888887 77777776653
No 103
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.44 E-value=6.8e-13 Score=110.30 Aligned_cols=129 Identities=9% Similarity=0.087 Sum_probs=104.3
Q ss_pred hHHHhccCcchHHHHHHHHhcccCCC---CCHHHHHHHHHHHHH--------cCCHHHHHHHHHHHHhhCCCCCCCccch
Q 026773 96 PTFTRRLFIPSVSGIWDALTGGNNNS---REAVVAIRRGMLLFR--------QGDVVGSVAEFDKAIELDPRQKISGKGA 164 (233)
Q Consensus 96 ~~~~r~~~~~~a~~i~~~~i~~~l~P---~~a~Ay~~RG~a~~~--------lGdyeeAIadfdkAIeLdP~~~~~~~~~ 164 (233)
..+-+.+-...|...+..++ +++| ..+.+++.+|.+++. +|++++|+..|+++++++|+++.
T Consensus 60 ~~~~~~~~~~~A~~~~~~~l--~~~p~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~----- 132 (261)
T 3qky_A 60 RAYYQNKEYLLAASEYERFI--QIYQIDPRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHEL----- 132 (261)
T ss_dssp HHHHHTTCHHHHHHHHHHHH--HHCTTCTTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTT-----
T ss_pred HHHHHhCcHHHHHHHHHHHH--HHCCCCchhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchh-----
Confidence 33444555678888999998 7766 457899999999999 99999999999999999999872
Q ss_pred hhhh---------hhhhhhhhhhHHHHHHcCCcHHHHHHHHHHHHcCCC---CHHHHHHHHHHHHHc----------CCH
Q 026773 165 YRFT---------ISIVGIILKKLIRVSHFNRFEEGAEQFRIDVAQNPN---DTEESIWCFLCEAQL----------YGV 222 (233)
Q Consensus 165 y~~~---------~~~~~a~~~rG~al~~lGryeeAi~~f~kAL~lnP~---d~e~~~~~~l~~a~L----------g~~ 222 (233)
. +. ..+...++++|.+++..|++++|++.|+++++.+|+ .++.+.+++.|+..+ |++
T Consensus 133 ~-~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~ 211 (261)
T 3qky_A 133 V-DDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERY 211 (261)
T ss_dssp H-HHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHH
T ss_pred H-HHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchH
Confidence 2 21 011222367999999999999999999999999998 456778888888866 889
Q ss_pred HHHHHHHHhh
Q 026773 223 DEARNRFLEA 232 (233)
Q Consensus 223 dEA~~~~l~~ 232 (233)
++|...+.++
T Consensus 212 ~~A~~~~~~~ 221 (261)
T 3qky_A 212 RRAVELYERL 221 (261)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999998764
No 104
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=99.44 E-value=8.3e-13 Score=97.29 Aligned_cols=85 Identities=7% Similarity=0.081 Sum_probs=77.0
Q ss_pred hHHHHHHHHhcccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHHHc
Q 026773 106 SVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSHF 185 (233)
Q Consensus 106 ~a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~l 185 (233)
++...+..++ +.+|+++.+|+.+|.++..+|++++|+..|++|++++|+++ ..++ ++|.++..+
T Consensus 3 ~a~~~~~~al--~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~-----~~~~---------~la~~~~~~ 66 (115)
T 2kat_A 3 AITERLEAML--AQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYS-----VAWK---------WLGKTLQGQ 66 (115)
T ss_dssp CHHHHHHHHH--TTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH-----HHHH---------HHHHHHHHH
T ss_pred HHHHHHHHHH--HhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcH-----HHHH---------HHHHHHHHc
Confidence 4677888888 89999999999999999999999999999999999999987 3433 599999999
Q ss_pred CCcHHHHHHHHHHHHcCCCCH
Q 026773 186 NRFEEGAEQFRIDVAQNPNDT 206 (233)
Q Consensus 186 GryeeAi~~f~kAL~lnP~d~ 206 (233)
|++++|++.|+++++++|++.
T Consensus 67 g~~~~A~~~~~~al~~~~~~~ 87 (115)
T 2kat_A 67 GDRAGARQAWESGLAAAQSRG 87 (115)
T ss_dssp TCHHHHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHhccccc
Confidence 999999999999999998543
No 105
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.43 E-value=2.7e-12 Score=107.19 Aligned_cols=121 Identities=8% Similarity=0.001 Sum_probs=105.0
Q ss_pred hHHHhccCcchHHHHHHHHhcccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhh
Q 026773 96 PTFTRRLFIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGII 175 (233)
Q Consensus 96 ~~~~r~~~~~~a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~ 175 (233)
..+.+.+-...|...++.++ +.+|+++.++..+|.++...|++++|++.++++++++|+++ ..+.
T Consensus 128 ~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~-----~~~~-------- 192 (359)
T 3ieg_A 128 LDAFDGADYTAAITFLDKIL--EVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNT-----EAFY-------- 192 (359)
T ss_dssp HHHHHTTCHHHHHHHHHHHH--HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCH-----HHHH--------
T ss_pred HHHHHccCHHHHHHHHHHHH--HhCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH-----HHHH--------
Confidence 34455556678888898888 88999999999999999999999999999999999999988 3433
Q ss_pred hhhHHHHHHcCCcHHHHHHHHHHHHcCCCCHHHHHHH------------HHHHHHcCCHHHHHHHHHhh
Q 026773 176 LKKLIRVSHFNRFEEGAEQFRIDVAQNPNDTEESIWC------------FLCEAQLYGVDEARNRFLEA 232 (233)
Q Consensus 176 ~~rG~al~~lGryeeAi~~f~kAL~lnP~d~e~~~~~------------~l~~a~Lg~~dEA~~~~l~~ 232 (233)
.+|.++...|++++|++.|+++++++|+++..+.+. +.++...|++++|...+.++
T Consensus 193 -~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~ 260 (359)
T 3ieg_A 193 -KISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESV 260 (359)
T ss_dssp -HHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred -HHHHHHHHcCCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 599999999999999999999999999998865443 55677899999999988764
No 106
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.42 E-value=1.6e-12 Score=107.07 Aligned_cols=129 Identities=9% Similarity=0.016 Sum_probs=106.2
Q ss_pred hHHHhccCcchHHHHHHHHhcccCCCCCHH---HHHHHHHHHHH------------------cCCHHHHHHHHHHHHhhC
Q 026773 96 PTFTRRLFIPSVSGIWDALTGGNNNSREAV---VAIRRGMLLFR------------------QGDVVGSVAEFDKAIELD 154 (233)
Q Consensus 96 ~~~~r~~~~~~a~~i~~~~i~~~l~P~~a~---Ay~~RG~a~~~------------------lGdyeeAIadfdkAIeLd 154 (233)
..+-+.+-...|...++.++ +++|+++. +++.+|.++.. +|++++|+..|+++++.+
T Consensus 49 ~~~~~~~~~~~A~~~~~~~l--~~~P~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~ 126 (225)
T 2yhc_A 49 YAYYKNADLPLAQAAIDRFI--RLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGY 126 (225)
T ss_dssp HHHHHTTCHHHHHHHHHHHH--HHCTTCTTHHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTC
T ss_pred HHHHhcCCHHHHHHHHHHHH--HHCcCCCcHHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHC
Confidence 34455556678899999999 88998874 89999999987 689999999999999999
Q ss_pred CCCCCCccchhhhh---------hhhhhhhhhhHHHHHHcCCcHHHHHHHHHHHHcCCCCH---HHHHHHHHHHHHcCCH
Q 026773 155 PRQKISGKGAYRFT---------ISIVGIILKKLIRVSHFNRFEEGAEQFRIDVAQNPNDT---EESIWCFLCEAQLYGV 222 (233)
Q Consensus 155 P~~~~~~~~~y~~~---------~~~~~a~~~rG~al~~lGryeeAi~~f~kAL~lnP~d~---e~~~~~~l~~a~Lg~~ 222 (233)
|+++. .+. ..+....+.+|.+++..|++++|+..|+++++..|+++ +.+..++.|+.++|+.
T Consensus 127 P~~~~------a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~ 200 (225)
T 2yhc_A 127 PNSQY------TTDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMN 200 (225)
T ss_dssp TTCTT------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCH
T ss_pred cCChh------HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCc
Confidence 99882 221 01122335689999999999999999999999999986 5678888999999999
Q ss_pred HHHHHHHHhh
Q 026773 223 DEARNRFLEA 232 (233)
Q Consensus 223 dEA~~~~l~~ 232 (233)
++|+..+..+
T Consensus 201 ~~A~~~~~~l 210 (225)
T 2yhc_A 201 AQAEKVAKII 210 (225)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999988753
No 107
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=99.42 E-value=3.6e-13 Score=98.85 Aligned_cols=75 Identities=8% Similarity=0.187 Sum_probs=66.1
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHHHcCCcHHHHHHHHHH
Q 026773 119 NNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSHFNRFEEGAEQFRID 198 (233)
Q Consensus 119 l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~lGryeeAi~~f~kA 198 (233)
.+|+++.+|+.+|.++..+|++++|++.|++|++++|+++ ..++ ++|.++..+|++++|++.|+++
T Consensus 2 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~-----~a~~---------~lg~~~~~~g~~~~A~~~~~~a 67 (100)
T 3ma5_A 2 EDPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYV-----GTYY---------HLGKLYERLDRTDDAIDTYAQG 67 (100)
T ss_dssp ---CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCT-----HHHH---------HHHHHHHHTTCHHHHHHHHHHH
T ss_pred CCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcH-----HHHH---------HHHHHHHHcCCHHHHHHHHHHH
Confidence 5799999999999999999999999999999999999998 4433 5999999999999999999999
Q ss_pred HHcCCCCHH
Q 026773 199 VAQNPNDTE 207 (233)
Q Consensus 199 L~lnP~d~e 207 (233)
++++|++.+
T Consensus 68 l~l~~~~~~ 76 (100)
T 3ma5_A 68 IEVAREEGT 76 (100)
T ss_dssp HHHHHHHSC
T ss_pred HhhhhcCCc
Confidence 999886443
No 108
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=99.42 E-value=4e-13 Score=121.79 Aligned_cols=117 Identities=10% Similarity=0.152 Sum_probs=102.2
Q ss_pred hHHHhccCcchHHHHHHHHhccc----------------CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCC
Q 026773 96 PTFTRRLFIPSVSGIWDALTGGN----------------NNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKI 159 (233)
Q Consensus 96 ~~~~r~~~~~~a~~i~~~~i~~~----------------l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~ 159 (233)
..+-+.+-...|...|.+++ + ++|.++.+|.++|.++..+|++++|++++++|++++|+++
T Consensus 231 ~~~~~~g~~~~Ai~~y~kAl--~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~- 307 (370)
T 1ihg_A 231 NTFFKSQNWEMAIKKYTKVL--RYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNT- 307 (370)
T ss_dssp HHHHHTTCHHHHHHHHHHHH--HHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCH-
T ss_pred HHHHHhcCHHHHHHHHHHHH--HHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCchhH-
Confidence 34445556677888888888 5 7899999999999999999999999999999999999987
Q ss_pred CccchhhhhhhhhhhhhhhHHHHHHcCCcHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 026773 160 SGKGAYRFTISIVGIILKKLIRVSHFNRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQLYGVDEARNR 228 (233)
Q Consensus 160 ~~~~~y~~~~~~~~a~~~rG~al~~lGryeeAi~~f~kAL~lnP~d~e~~~~~~l~~a~Lg~~dEA~~~ 228 (233)
..++ ++|.++..+|++++|+++|+++++++|++.+.+..+..+...+++.++|...
T Consensus 308 ----~a~~---------~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a~k~ 363 (370)
T 1ihg_A 308 ----KALY---------RRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKEKA 363 (370)
T ss_dssp ----HHHH---------HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred ----HHHH---------HHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444 4999999999999999999999999999999888888888888888887654
No 109
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.42 E-value=2.6e-12 Score=115.49 Aligned_cols=147 Identities=5% Similarity=-0.045 Sum_probs=122.7
Q ss_pred ccCCcchhhccccccccccccccccchhHH---Hhcc-CcchHHHHHHHHhcccCCCCCHHHHHHHHHHHHHcC--CHHH
Q 026773 69 SKAPLSVQTHINSLFSTPRGHYLQNRAPTF---TRRL-FIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQG--DVVG 142 (233)
Q Consensus 69 ~~~~~~~~~~~n~~~~~~~~h~~~~~~~~~---~r~~-~~~~a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~lG--dyee 142 (233)
.+.|+-+....+|+........+.+....+ -+.+ +.++|..+++.++ ++||++..+|+.||.++..+| ++++
T Consensus 10 dv~p~~~~~~~~~~~~i~y~~~y~~~~~~~~a~~~~~e~s~~aL~~t~~~L--~~nP~~~taWn~R~~~L~~l~~~~~~e 87 (306)
T 3dra_A 10 DITPVDINTEEPQICQILYDEDYKQIMGLLLALMKAEEYSERALHITELGI--NELASHYTIWIYRFNILKNLPNRNLYD 87 (306)
T ss_dssp TCCCCCCCCSSCCTTCCCCCHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHH--HHCTTCHHHHHHHHHHHHTCTTSCHHH
T ss_pred CCeecCCCCCCCCceeeeeCHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHH--HHCcHHHHHHHHHHHHHHHcccccHHH
Confidence 567777767777776655544444443333 3344 7889999999999 999999999999999999999 9999
Q ss_pred HHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHH----HHc---CCcHHHHHHHHHHHHcCCCCHHHHHHHHHH
Q 026773 143 SVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRV----SHF---NRFEEGAEQFRIDVAQNPNDTEESIWCFLC 215 (233)
Q Consensus 143 AIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al----~~l---GryeeAi~~f~kAL~lnP~d~e~~~~~~l~ 215 (233)
+++.++++|+++|++. .. |+ .||.++ ..+ ++++++++.++++++++|.+..+|.+++.+
T Consensus 88 eL~~~~~~L~~nPk~y-----~a-W~--------~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~pkny~aW~~R~~v 153 (306)
T 3dra_A 88 ELDWCEEIALDNEKNY-----QI-WN--------YRQLIIGQIMELNNNDFDPYREFDILEAMLSSDPKNHHVWSYRKWL 153 (306)
T ss_dssp HHHHHHHHHHHCTTCC-----HH-HH--------HHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHCcccH-----HH-HH--------HHHHHHHHHHHhccccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 9999999999999998 44 33 599999 777 899999999999999999999999999999
Q ss_pred HHHcCCHH--HHHHHHHh
Q 026773 216 EAQLYGVD--EARNRFLE 231 (233)
Q Consensus 216 ~a~Lg~~d--EA~~~~l~ 231 (233)
..++|+++ ++.+.+.+
T Consensus 154 l~~l~~~~~~~EL~~~~~ 171 (306)
T 3dra_A 154 VDTFDLHNDAKELSFVDK 171 (306)
T ss_dssp HHHTTCTTCHHHHHHHHH
T ss_pred HHHhcccChHHHHHHHHH
Confidence 99999888 88876654
No 110
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.42 E-value=2.3e-12 Score=112.89 Aligned_cols=121 Identities=13% Similarity=0.154 Sum_probs=104.4
Q ss_pred hHHHhccCcchHHHHHHHHhcccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhh
Q 026773 96 PTFTRRLFIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGII 175 (233)
Q Consensus 96 ~~~~r~~~~~~a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~ 175 (233)
..+-+.+-...|..+++.++ +.+|+++.+|..+|.++..+|++++|+..|+++++++|+++ ..+.
T Consensus 34 ~~~~~~g~~~~A~~~~~~~l--~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~-----~~~~-------- 98 (450)
T 2y4t_A 34 KKLLAAGQLADALSQFHAAV--DGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFT-----AARL-------- 98 (450)
T ss_dssp HHHHHTTCHHHHHHHHHHHH--HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH-----HHHH--------
T ss_pred HHHHHCCCHHHHHHHHHHHH--HhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcH-----HHHH--------
Confidence 44555666788999999998 88999999999999999999999999999999999999987 3433
Q ss_pred hhhHHHHHHcCCcHHHHHHHHHHHHcCCCCH---HHHHHH------------HHHHHHcCCHHHHHHHHHhh
Q 026773 176 LKKLIRVSHFNRFEEGAEQFRIDVAQNPNDT---EESIWC------------FLCEAQLYGVDEARNRFLEA 232 (233)
Q Consensus 176 ~~rG~al~~lGryeeAi~~f~kAL~lnP~d~---e~~~~~------------~l~~a~Lg~~dEA~~~~l~~ 232 (233)
.+|.++..+|++++|++.|+++++++|+++ +.+... +.+....|++++|...+.++
T Consensus 99 -~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~ 169 (450)
T 2y4t_A 99 -QRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKI 169 (450)
T ss_dssp -HHHHHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred -HHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 599999999999999999999999999987 654333 55677899999999988764
No 111
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.42 E-value=1.1e-12 Score=114.79 Aligned_cols=112 Identities=13% Similarity=0.113 Sum_probs=91.9
Q ss_pred chHHHHHHHHhcccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHHH
Q 026773 105 PSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSH 184 (233)
Q Consensus 105 ~~a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~ 184 (233)
+.+...|..++ ..+|+++.+|..+|..++..|++++|+..|+++++++|+++ ..+. .+|.++..
T Consensus 9 ~~~~~~~~~~~--~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~-----~~~~---------~l~~~~~~ 72 (450)
T 2y4t_A 9 SGVDLGTENLY--FQSMADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNY-----IAYY---------RRATVFLA 72 (450)
T ss_dssp ----------------CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH-----HHHH---------HHHHHHHH
T ss_pred ccccccccccc--cccHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccH-----HHHH---------HHHHHHHH
Confidence 34555666666 78999999999999999999999999999999999999887 3433 59999999
Q ss_pred cCCcHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhh
Q 026773 185 FNRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLEA 232 (233)
Q Consensus 185 lGryeeAi~~f~kAL~lnP~d~e~~~~~~l~~a~Lg~~dEA~~~~l~~ 232 (233)
+|++++|++.|+++++++|+++..+..++.++..+|++++|...|.++
T Consensus 73 ~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 120 (450)
T 2y4t_A 73 MGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKV 120 (450)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 999999999999999999999999889999999999999999998764
No 112
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.42 E-value=3.1e-13 Score=130.91 Aligned_cols=114 Identities=11% Similarity=0.073 Sum_probs=99.8
Q ss_pred cchHHHHHHHHh------cccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhh
Q 026773 104 IPSVSGIWDALT------GGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILK 177 (233)
Q Consensus 104 ~~~a~~i~~~~i------~~~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~ 177 (233)
..+|...+++++ ..+++|+++++|..+|.++..+|++++|++.|++|++++|+++ ..++ +
T Consensus 407 ~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~-----~a~~---------~ 472 (681)
T 2pzi_A 407 PVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRW-----RLVW---------Y 472 (681)
T ss_dssp HHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCH-----HHHH---------H
T ss_pred HHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchH-----HHHH---------H
Confidence 345667777765 2267899999999999999999999999999999999999988 4444 4
Q ss_pred hHHHHHHcCCcHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhh
Q 026773 178 KLIRVSHFNRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLEA 232 (233)
Q Consensus 178 rG~al~~lGryeeAi~~f~kAL~lnP~d~e~~~~~~l~~a~Lg~~dEA~~~~l~~ 232 (233)
+|.++..+|++++|++.|+++++++|++++.+.+++.++.++|++++ ...|.++
T Consensus 473 lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~a 526 (681)
T 2pzi_A 473 RAVAELLTGDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKFYQTV 526 (681)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHHHHH
Confidence 99999999999999999999999999999999999999999999998 8777653
No 113
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.40 E-value=4.8e-12 Score=115.11 Aligned_cols=121 Identities=11% Similarity=-0.048 Sum_probs=99.3
Q ss_pred hHHHhccCcchHHHHHHHHhcccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhh
Q 026773 96 PTFTRRLFIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGII 175 (233)
Q Consensus 96 ~~~~r~~~~~~a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~ 175 (233)
..+.+.+-..+|...+++++ +++|+++.+|..+|.++...|++++|++.|+++++++|++. ..+
T Consensus 381 ~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-----~~~--------- 444 (597)
T 2xpi_A 381 IYYLCVNKISEARRYFSKSS--TMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTH-----LPY--------- 444 (597)
T ss_dssp HHHHHTTCHHHHHHHHHHHH--HHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCS-----HHH---------
T ss_pred HHHHHhccHHHHHHHHHHHH--HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccch-----HHH---------
Confidence 34455556677777888777 77888888888888888888888888888888888888776 332
Q ss_pred hhhHHHHHHcCCcHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhh
Q 026773 176 LKKLIRVSHFNRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLEA 232 (233)
Q Consensus 176 ~~rG~al~~lGryeeAi~~f~kAL~lnP~d~e~~~~~~l~~a~Lg~~dEA~~~~l~~ 232 (233)
+.+|.++...|++++|++.|+++++++|+++..+..++.++.+.|++++|...|.++
T Consensus 445 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 501 (597)
T 2xpi_A 445 LFLGMQHMQLGNILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNA 501 (597)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 258999999999999999999999999999988888888888999999999888764
No 114
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.39 E-value=1.7e-12 Score=111.66 Aligned_cols=112 Identities=13% Similarity=0.071 Sum_probs=94.9
Q ss_pred chHHHHHHHHhcccCCCCCHHHHHHHHHHHHH-------cCCH-------HHHHHHHHHHHh-hCCCCCCCccchhhhhh
Q 026773 105 PSVSGIWDALTGGNNNSREAVVAIRRGMLLFR-------QGDV-------VGSVAEFDKAIE-LDPRQKISGKGAYRFTI 169 (233)
Q Consensus 105 ~~a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~-------lGdy-------eeAIadfdkAIe-LdP~~~~~~~~~y~~~~ 169 (233)
..|..+|.+++ +.+|+++++|+.+|..+.. .|++ ++|++.|++|++ ++|++. ..|.
T Consensus 33 ~~a~~~~~~al--~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~------~~~~- 103 (308)
T 2ond_A 33 KRVMFAYEQCL--LVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNM------LLYF- 103 (308)
T ss_dssp HHHHHHHHHHH--HHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCH------HHHH-
T ss_pred HHHHHHHHHHH--HHcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccH------HHHH-
Confidence 45778999999 8899999999999999874 6986 999999999999 799887 3333
Q ss_pred hhhhhhhhhHHHHHHcCCcHHHHHHHHHHHHcCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHhh
Q 026773 170 SIVGIILKKLIRVSHFNRFEEGAEQFRIDVAQNPNDTE-ESIWCFLCEAQLYGVDEARNRFLEA 232 (233)
Q Consensus 170 ~~~~a~~~rG~al~~lGryeeAi~~f~kAL~lnP~d~e-~~~~~~l~~a~Lg~~dEA~~~~l~~ 232 (233)
++|.++...|++++|.+.|+++++++|++++ .+...+.++..+|++++|+..|.++
T Consensus 104 -------~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a 160 (308)
T 2ond_A 104 -------AYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKA 160 (308)
T ss_dssp -------HHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred -------HHHHHHHhcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 5888999999999999999999999998886 6666667777888899998888764
No 115
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=99.39 E-value=3e-13 Score=116.55 Aligned_cols=94 Identities=13% Similarity=0.129 Sum_probs=84.6
Q ss_pred hHHHhccCcchHHHHHHHHhcccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhh
Q 026773 96 PTFTRRLFIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGII 175 (233)
Q Consensus 96 ~~~~r~~~~~~a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~ 175 (233)
..+.+.+-..+|...|..++ +++|+++.+|.++|.++..+|++++|+++|++|++++|+++ ..++
T Consensus 12 ~~~~~~g~~~~A~~~~~~al--~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~-----~~~~-------- 76 (281)
T 2c2l_A 12 NRLFVGRKYPEAAACYGRAI--TRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSV-----KAHF-------- 76 (281)
T ss_dssp HHHHHTTCHHHHHHHHHHHH--HHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCH-----HHHH--------
T ss_pred HHHHHcCCHHHHHHHHHHHH--HhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCH-----HHHH--------
Confidence 44555566778999999999 89999999999999999999999999999999999999987 4433
Q ss_pred hhhHHHHHHcCCcHHHHHHHHHHHHcCCCC
Q 026773 176 LKKLIRVSHFNRFEEGAEQFRIDVAQNPND 205 (233)
Q Consensus 176 ~~rG~al~~lGryeeAi~~f~kAL~lnP~d 205 (233)
++|.++..+|++++|++.|+++++++|++
T Consensus 77 -~lg~~~~~~g~~~~A~~~~~~al~l~p~~ 105 (281)
T 2c2l_A 77 -FLGQCQLEMESYDEAIANLQRAYSLAKEQ 105 (281)
T ss_dssp -HHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred -HHHHHHHHcCCHHHHHHHHHHHHHhCccc
Confidence 59999999999999999999999999976
No 116
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.39 E-value=1.7e-12 Score=116.02 Aligned_cols=130 Identities=15% Similarity=0.139 Sum_probs=95.4
Q ss_pred hHHHhccCcchHHHHHHHHhcccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhh------
Q 026773 96 PTFTRRLFIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTI------ 169 (233)
Q Consensus 96 ~~~~r~~~~~~a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~------ 169 (233)
..+.+.+-...|...+..++ +++|+++.+|..+|.++..+|++++|++.|+++++++|+++ ..+...
T Consensus 318 ~~~~~~~~~~~A~~~~~~a~--~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~-----~~~~~l~~~~~~ 390 (537)
T 3fp2_A 318 QMYFILQDYKNAKEDFQKAQ--SLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLP-----EVPTFFAEILTD 390 (537)
T ss_dssp HHHHHTTCHHHHHHHHHHHH--HHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCT-----HHHHHHHHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHHH--HhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCh-----HHHHHHHHHHHH
Confidence 33444445556666666666 56666666666666666666666666666666666666665 111110
Q ss_pred -------------------------hhhhhhhhhHHHHHHc----------CCcHHHHHHHHHHHHcCCCCHHHHHHHHH
Q 026773 170 -------------------------SIVGIILKKLIRVSHF----------NRFEEGAEQFRIDVAQNPNDTEESIWCFL 214 (233)
Q Consensus 170 -------------------------~~~~a~~~rG~al~~l----------GryeeAi~~f~kAL~lnP~d~e~~~~~~l 214 (233)
..++.+..+|.++... |++++|++.|+++++++|++++.+..++.
T Consensus 391 ~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~ 470 (537)
T 3fp2_A 391 RGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQ 470 (537)
T ss_dssp TTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 0134466778999999 99999999999999999999999999999
Q ss_pred HHHHcCCHHHHHHHHHhh
Q 026773 215 CEAQLYGVDEARNRFLEA 232 (233)
Q Consensus 215 ~~a~Lg~~dEA~~~~l~~ 232 (233)
++..+|++++|...|.++
T Consensus 471 ~~~~~g~~~~A~~~~~~a 488 (537)
T 3fp2_A 471 LKLQMEKIDEAIELFEDS 488 (537)
T ss_dssp HHHHTTCHHHHHHHHHHH
T ss_pred HHHHhccHHHHHHHHHHH
Confidence 999999999999998764
No 117
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=99.38 E-value=5.5e-12 Score=114.76 Aligned_cols=125 Identities=10% Similarity=0.032 Sum_probs=91.7
Q ss_pred HhccCcchHHHHHHHHhcccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhh
Q 026773 99 TRRLFIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKK 178 (233)
Q Consensus 99 ~r~~~~~~a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~r 178 (233)
.+.+-..+|...++.++ +++|+++.+|..+|.++...|++++|++.|++++++.|+.+. ++. ..+.++..+
T Consensus 452 ~~~g~~~~A~~~~~~~~--~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~p~----~~~~~~~~l 522 (597)
T 2xpi_A 452 MQLGNILLANEYLQSSY--ALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQS---NEK----PWAATWANL 522 (597)
T ss_dssp HHHTCHHHHHHHHHHHH--HHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC---CSG----GGHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHH--HhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhcccc---chh----hHHHHHHHH
Confidence 33344455555666655 566667777777777777777777777777777766332110 000 012355679
Q ss_pred HHHHHHcCCcHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhh
Q 026773 179 LIRVSHFNRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLEA 232 (233)
Q Consensus 179 G~al~~lGryeeAi~~f~kAL~lnP~d~e~~~~~~l~~a~Lg~~dEA~~~~l~~ 232 (233)
|.++...|++++|++.|+++++++|+++..+..++.++...|++++|...+.++
T Consensus 523 ~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 576 (597)
T 2xpi_A 523 GHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHES 576 (597)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999998764
No 118
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=99.38 E-value=2.8e-12 Score=90.46 Aligned_cols=95 Identities=8% Similarity=-0.015 Sum_probs=83.4
Q ss_pred hHHHhccCcchHHHHHHHHhcccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC--CCCCccchhhhhhhhhh
Q 026773 96 PTFTRRLFIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPR--QKISGKGAYRFTISIVG 173 (233)
Q Consensus 96 ~~~~r~~~~~~a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~--~~~~~~~~y~~~~~~~~ 173 (233)
..+.+.+-...|...+..++ +++|+++.+|..+|.++..+|++++|++.|+++++++|+ +. ..+
T Consensus 14 ~~~~~~~~~~~A~~~~~~a~--~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~-----~~~------- 79 (112)
T 2kck_A 14 VLQYDAGNYTESIDLFEKAI--QLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNK-----DVW------- 79 (112)
T ss_dssp HHHHSSCCHHHHHHHHHHHH--HHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCH-----HHH-------
T ss_pred HHHHHhhhHHHHHHHHHHHH--HhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchH-----HHH-------
Confidence 33444555678889999998 889999999999999999999999999999999999998 66 333
Q ss_pred hhhhhHHHHHHc-CCcHHHHHHHHHHHHcCCCCH
Q 026773 174 IILKKLIRVSHF-NRFEEGAEQFRIDVAQNPNDT 206 (233)
Q Consensus 174 a~~~rG~al~~l-GryeeAi~~f~kAL~lnP~d~ 206 (233)
.++|.++..+ |++++|++.++++++.+|+++
T Consensus 80 --~~l~~~~~~~~~~~~~A~~~~~~~~~~~p~~~ 111 (112)
T 2kck_A 80 --AAKADALRYIEGKEVEAEIAEARAKLEHHHHH 111 (112)
T ss_dssp --HHHHHHHTTCSSCSHHHHHHHHHHGGGCCCCC
T ss_pred --HHHHHHHHHHhCCHHHHHHHHHHHhhcccCCC
Confidence 3599999999 999999999999999999864
No 119
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.38 E-value=2e-12 Score=110.99 Aligned_cols=129 Identities=10% Similarity=-0.011 Sum_probs=102.9
Q ss_pred chhHHHhccCcchHHHHHHHHhcccCCCCC------HHHHHHHHHHHHHc-CCHHHHHHHHHHHHhhCCCCCCCccchhh
Q 026773 94 RAPTFTRRLFIPSVSGIWDALTGGNNNSRE------AVVAIRRGMLLFRQ-GDVVGSVAEFDKAIELDPRQKISGKGAYR 166 (233)
Q Consensus 94 ~~~~~~r~~~~~~a~~i~~~~i~~~l~P~~------a~Ay~~RG~a~~~l-GdyeeAIadfdkAIeLdP~~~~~~~~~y~ 166 (233)
....+.+.+-..+|...+++++ ++.|.. +.++.++|.++..+ |++++|++.|++|+++.|+... ..
T Consensus 83 lg~~~~~~g~~~~A~~~~~~Al--~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~-----~~ 155 (292)
T 1qqe_A 83 AYKCFKSGGNSVNAVDSLENAI--QIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQS-----VA 155 (292)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHH--HHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC-----HH
T ss_pred HHHHHHHCCCHHHHHHHHHHHH--HHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCC-----hH
Confidence 3344555556677888888887 444432 67999999999996 9999999999999999997641 11
Q ss_pred hhhhhhhhhhhhHHHHHHcCCcHHHHHHHHHHHHcCCCCHH-------HHHHHHHHHHHcCCHHHHHHHHHhh
Q 026773 167 FTISIVGIILKKLIRVSHFNRFEEGAEQFRIDVAQNPNDTE-------ESIWCFLCEAQLYGVDEARNRFLEA 232 (233)
Q Consensus 167 ~~~~~~~a~~~rG~al~~lGryeeAi~~f~kAL~lnP~d~e-------~~~~~~l~~a~Lg~~dEA~~~~l~~ 232 (233)
....+++++|.++..+|+|++|++.|+++++++|++.. .+...+.|+..+|++++|+..+.++
T Consensus 156 ---~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 225 (292)
T 1qqe_A 156 ---LSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEG 225 (292)
T ss_dssp ---HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGG
T ss_pred ---HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 11345678999999999999999999999999998754 3456778899999999999998765
No 120
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=99.38 E-value=1.7e-12 Score=93.71 Aligned_cols=113 Identities=12% Similarity=0.100 Sum_probs=90.9
Q ss_pred HHHhccCcchHHHHHHHHhcccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhh
Q 026773 97 TFTRRLFIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIIL 176 (233)
Q Consensus 97 ~~~r~~~~~~a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~ 176 (233)
.+.+.+-...|...+..++ +.+|+++.++..+|.++..+|++++|+..|+++++++|++.. ... ....++.
T Consensus 13 ~~~~~~~~~~A~~~~~~a~--~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~-----~~~--~~~~~~~ 83 (131)
T 1elr_A 13 DAYKKKDFDTALKHYDKAK--ELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENRE-----DYR--QIAKAYA 83 (131)
T ss_dssp HHHHTTCHHHHHHHHHHHH--HHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTT-----CHH--HHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHH--hcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccch-----hHH--HHHHHHH
Confidence 3444556678889999998 889999999999999999999999999999999999997631 100 1133566
Q ss_pred hhHHHHHHcCCcHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHc
Q 026773 177 KKLIRVSHFNRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQL 219 (233)
Q Consensus 177 ~rG~al~~lGryeeAi~~f~kAL~lnP~d~e~~~~~~l~~a~L 219 (233)
++|.++..+|++++|++.|+++++++| +++.......+...+
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~ 125 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEKIL 125 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHH
Confidence 799999999999999999999999999 566555555554443
No 121
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.36 E-value=5.9e-12 Score=111.23 Aligned_cols=120 Identities=19% Similarity=0.154 Sum_probs=102.3
Q ss_pred HHHhccCcchHHHHHHHHhcccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhh
Q 026773 97 TFTRRLFIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIIL 176 (233)
Q Consensus 97 ~~~r~~~~~~a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~ 176 (233)
.+.+.+-...|...+..++ +++|+++.+|..+|.++...|++++|+..|+++++++|+++ ..+.
T Consensus 279 ~~~~~~~~~~A~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-----~~~~--------- 342 (514)
T 2gw1_A 279 IMADRNDSTEYYNYFDKAL--KLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENI-----FPYI--------- 342 (514)
T ss_dssp HHHTSSCCTTGGGHHHHHH--TTCTTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTCSSCS-----HHHH---------
T ss_pred HHHHCCCHHHHHHHHHHHh--hcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhChhhH-----HHHH---------
Confidence 3444455667777888887 88899999999999999999999999999999999999887 3333
Q ss_pred hhHHHHHHcCCcHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhh
Q 026773 177 KKLIRVSHFNRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLEA 232 (233)
Q Consensus 177 ~rG~al~~lGryeeAi~~f~kAL~lnP~d~e~~~~~~l~~a~Lg~~dEA~~~~l~~ 232 (233)
.+|.++...|++++|++.|+++++.+|++++.+...+.++..+|++++|...+.++
T Consensus 343 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 398 (514)
T 2gw1_A 343 QLACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLA 398 (514)
T ss_dssp HHHHHTTTTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 58999999999999999999999999999998888888999999999999988754
No 122
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.36 E-value=4.9e-12 Score=121.57 Aligned_cols=114 Identities=11% Similarity=0.014 Sum_probs=104.7
Q ss_pred CcchHHHHHHHHhcccCCCCCHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHhhCCCCCCCccchhhhhhhhh
Q 026773 103 FIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGD----------VVGSVAEFDKAIELDPRQKISGKGAYRFTISIV 172 (233)
Q Consensus 103 ~~~~a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~lGd----------yeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~ 172 (233)
+.++|...+++++ +++|++..+|+.||.++..+|+ +++|++.++++|+++|+++ ..+.
T Consensus 44 ~~eeal~~~~~~l--~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y-----~aW~----- 111 (567)
T 1dce_A 44 LDESVLELTSQIL--GANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSY-----GTWH----- 111 (567)
T ss_dssp CSHHHHHHHHHHH--HHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCH-----HHHH-----
T ss_pred CCHHHHHHHHHHH--HHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCH-----HHHH-----
Confidence 7788899999999 9999999999999999999998 9999999999999999998 3433
Q ss_pred hhhhhhHHHHHHcC--CcHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHhh
Q 026773 173 GIILKKLIRVSHFN--RFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQLY-GVDEARNRFLEA 232 (233)
Q Consensus 173 ~a~~~rG~al~~lG--ryeeAi~~f~kAL~lnP~d~e~~~~~~l~~a~Lg-~~dEA~~~~l~~ 232 (233)
.||.++..+| ++++|++.+++++++||++..+|.+++.+...+| .+++|.+.+.++
T Consensus 112 ----hR~w~l~~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~ 170 (567)
T 1dce_A 112 ----HRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSL 170 (567)
T ss_dssp ----HHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTT
T ss_pred ----HHHHHHHHcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHH
Confidence 5999999999 6699999999999999999999999999999999 899999887653
No 123
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.36 E-value=8.1e-12 Score=107.47 Aligned_cols=118 Identities=14% Similarity=0.077 Sum_probs=87.7
Q ss_pred HhccCcchHHHHHHHHhcccCCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhh
Q 026773 99 TRRLFIPSVSGIWDALTGGNNNSREAV-VAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILK 177 (233)
Q Consensus 99 ~r~~~~~~a~~i~~~~i~~~l~P~~a~-Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~ 177 (233)
.+.+-...|..+|+.++ +++|+++. +|..+|.++.++|++++|++.|++|++++|... .. | +.
T Consensus 110 ~~~~~~~~A~~~~~~al--~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~-----~~-~--------~~ 173 (308)
T 2ond_A 110 ESRMKYEKVHSIYNRLL--AIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRH-----HV-Y--------VT 173 (308)
T ss_dssp HHTTCHHHHHHHHHHHH--TSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCT-----HH-H--------HH
T ss_pred HhcCCHHHHHHHHHHHH--hccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCH-----HH-H--------HH
Confidence 33445567778888887 77888876 888888888888888888888888888888665 22 2 12
Q ss_pred hHHHHHH-cCCcHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhh
Q 026773 178 KLIRVSH-FNRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLEA 232 (233)
Q Consensus 178 rG~al~~-lGryeeAi~~f~kAL~lnP~d~e~~~~~~l~~a~Lg~~dEA~~~~l~~ 232 (233)
.+...+. .|++++|++.|+++++++|++++.+...+..+..+|++++|+..|.++
T Consensus 174 ~a~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~a 229 (308)
T 2ond_A 174 AALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERV 229 (308)
T ss_dssp HHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 3444332 688888888888888888888877666666677888888888888764
No 124
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=99.36 E-value=3.7e-13 Score=100.20 Aligned_cols=83 Identities=14% Similarity=0.122 Sum_probs=70.7
Q ss_pred HcCCHHHHHHHHHHHHhhC---CCCCCCccchhhhhhhhhhhhhhhHHHHHHcCCcHHHHHHHHHHHHcCCCCHHHHHHH
Q 026773 136 RQGDVVGSVAEFDKAIELD---PRQKISGKGAYRFTISIVGIILKKLIRVSHFNRFEEGAEQFRIDVAQNPNDTEESIWC 212 (233)
Q Consensus 136 ~lGdyeeAIadfdkAIeLd---P~~~~~~~~~y~~~~~~~~a~~~rG~al~~lGryeeAi~~f~kAL~lnP~d~e~~~~~ 212 (233)
.+|++++|+..|++|++++ |+++ . ++.++|.++..+|++++|++.|+++++++|++++.+.++
T Consensus 2 ~~g~~~~A~~~~~~al~~~~~~p~~~-----~---------~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l 67 (117)
T 3k9i_A 2 VLGLEAQAVPYYEKAIASGLQGKDLA-----E---------CYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFY 67 (117)
T ss_dssp -----CCCHHHHHHHHSSCCCHHHHH-----H---------HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCCCccHH-----H---------HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHH
Confidence 4799999999999999994 6554 2 344699999999999999999999999999999999999
Q ss_pred HHHHHHcCCHHHHHHHHHhh
Q 026773 213 FLCEAQLYGVDEARNRFLEA 232 (233)
Q Consensus 213 ~l~~a~Lg~~dEA~~~~l~~ 232 (233)
+.|+..+|++++|...+.++
T Consensus 68 ~~~~~~~g~~~~A~~~~~~a 87 (117)
T 3k9i_A 68 AMVLYNLGRYEQGVELLLKI 87 (117)
T ss_dssp HHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHH
Confidence 99999999999999988764
No 125
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.35 E-value=5.1e-12 Score=111.61 Aligned_cols=116 Identities=16% Similarity=0.181 Sum_probs=80.8
Q ss_pred HHHHHHHHhcccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHHH--
Q 026773 107 VSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSH-- 184 (233)
Q Consensus 107 a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~-- 184 (233)
|...+..++ +.+|+++.+|..+|.++...|++++|+..|+++++++|+++ .... .+.++.++|.++..
T Consensus 357 A~~~~~~~~--~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~-----~~~~---~~~~~~~l~~~~~~~~ 426 (514)
T 2gw1_A 357 CETLFSEAK--RKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLD-----GIYV---GIAPLVGKATLLTRNP 426 (514)
T ss_dssp HHHHHHHHH--HHSTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSS-----SCSS---CSHHHHHHHHHHHTSC
T ss_pred HHHHHHHHH--HHcccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccc-----hHHH---HHHHHHHHHHHHhhhh
Confidence 333444443 44455555555555555555555555555555555555443 1000 02266789999999
Q ss_pred -cCCcHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhh
Q 026773 185 -FNRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLEA 232 (233)
Q Consensus 185 -lGryeeAi~~f~kAL~lnP~d~e~~~~~~l~~a~Lg~~dEA~~~~l~~ 232 (233)
.|++++|++.|+++++++|++++.+..++.++..+|++++|...+.++
T Consensus 427 ~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 475 (514)
T 2gw1_A 427 TVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEES 475 (514)
T ss_dssp CTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 999999999999999999999999899999999999999999998764
No 126
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.35 E-value=2.2e-12 Score=110.71 Aligned_cols=129 Identities=10% Similarity=0.042 Sum_probs=101.5
Q ss_pred hHHHhccCcchHHHHHHHHhccc--C-CC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhh
Q 026773 96 PTFTRRLFIPSVSGIWDALTGGN--N-NS-REAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISI 171 (233)
Q Consensus 96 ~~~~r~~~~~~a~~i~~~~i~~~--l-~P-~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~ 171 (233)
..+...+-.+.|...|.+++... . +| ..+.+|.++|.++..+|++++|+..|++|+++.|+.. .. ...
T Consensus 45 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g-----~~---~~~ 116 (292)
T 1qqe_A 45 TIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRG-----QF---RRG 116 (292)
T ss_dssp HHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT-----CH---HHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcC-----CH---HHH
Confidence 34445556677888888887221 1 22 2378999999999999999999999999999998765 11 122
Q ss_pred hhhhhhhHHHHHHc-CCcHHHHHHHHHHHHcCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHhh
Q 026773 172 VGIILKKLIRVSHF-NRFEEGAEQFRIDVAQNPND------TEESIWCFLCEAQLYGVDEARNRFLEA 232 (233)
Q Consensus 172 ~~a~~~rG~al~~l-GryeeAi~~f~kAL~lnP~d------~e~~~~~~l~~a~Lg~~dEA~~~~l~~ 232 (233)
+.++.++|.++... |++++|++.|++|+++.|++ .+.+...+.++..+|++++|+..|.++
T Consensus 117 a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 184 (292)
T 1qqe_A 117 ANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKL 184 (292)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 45677899999995 99999999999999998865 344566788889999999999998764
No 127
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=99.34 E-value=5.2e-13 Score=118.57 Aligned_cols=119 Identities=5% Similarity=0.048 Sum_probs=77.2
Q ss_pred HHHhccCcchHHHHHHHHhcccCCCCCH-----------------HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCC
Q 026773 97 TFTRRLFIPSVSGIWDALTGGNNNSREA-----------------VVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKI 159 (233)
Q Consensus 97 ~~~r~~~~~~a~~i~~~~i~~~l~P~~a-----------------~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~ 159 (233)
.+-+.+-...|...|..++ +++|+++ .+|.++|.++..+|+|++|+.+|++||+++|+++
T Consensus 188 ~~~~~g~~~~A~~~y~~Al--~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~- 264 (338)
T 2if4_A 188 SLFKEEKLEEAMQQYEMAI--AYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVLTEEEKNP- 264 (338)
T ss_dssp HTCSSSCCHHHHHHHHHHH--HHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHHHHHCTTCH-
T ss_pred HHHhcCCHHHHHHHHHHHH--HHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCH-
Confidence 3344455677888999988 8889887 4999999999999999999999999999999987
Q ss_pred CccchhhhhhhhhhhhhhhHHHHHHcCCcHHHHHHHHHHHHcCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHh
Q 026773 160 SGKGAYRFTISIVGIILKKLIRVSHFNRFEEGAEQFRIDVAQNPNDTEESIWCFLCEA-QLYGVDEARNRFLE 231 (233)
Q Consensus 160 ~~~~~y~~~~~~~~a~~~rG~al~~lGryeeAi~~f~kAL~lnP~d~e~~~~~~l~~a-~Lg~~dEA~~~~l~ 231 (233)
..++ ++|.++..+|++++|+++|+++++++|++++.+..+..+.. ..+..++|+..|.+
T Consensus 265 ----~a~~---------~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~~~~~~ 324 (338)
T 2if4_A 265 ----KALF---------RRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQKEMYKG 324 (338)
T ss_dssp ----HHHH---------HHHHHHHTTTCHHHHHHHHHHTTC--------------------------------
T ss_pred ----HHHH---------HHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444 49999999999999999999999999999987777665633 45566777666543
No 128
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.34 E-value=1.2e-11 Score=88.65 Aligned_cols=94 Identities=20% Similarity=0.214 Sum_probs=85.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHHHcCCcHHHHHHHHHHHHcCCC
Q 026773 125 VVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSHFNRFEEGAEQFRIDVAQNPN 204 (233)
Q Consensus 125 ~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~lGryeeAi~~f~kAL~lnP~ 204 (233)
++|+.+|.++...|++++|+..|+++++++|++. ..+. .+|.++...|++++|++.|+++++.+|+
T Consensus 2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-----~~~~---------~~a~~~~~~~~~~~A~~~~~~~~~~~~~ 67 (136)
T 2fo7_A 2 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSA-----EAWY---------NLGNAYYKQGDYDEAIEYYQKALELDPR 67 (136)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCH-----HHHH---------HHHHHHHHHTCHHHHHHHHHHHHHHCTT
T ss_pred cHHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcch-----hHHH---------HHHHHHHHhcCHHHHHHHHHHHHHHCCC
Confidence 6789999999999999999999999999999877 3333 4899999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHhh
Q 026773 205 DTEESIWCFLCEAQLYGVDEARNRFLEA 232 (233)
Q Consensus 205 d~e~~~~~~l~~a~Lg~~dEA~~~~l~~ 232 (233)
++..+...+.+....|++++|...+.++
T Consensus 68 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~ 95 (136)
T 2fo7_A 68 SAEAWYNLGNAYYKQGDYDEAIEYYQKA 95 (136)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 9988888888899999999999988764
No 129
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.32 E-value=2e-11 Score=106.03 Aligned_cols=109 Identities=10% Similarity=0.036 Sum_probs=84.8
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhh------h-----------------hhhhhhhh
Q 026773 121 SREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFT------I-----------------SIVGIILK 177 (233)
Q Consensus 121 P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~------~-----------------~~~~a~~~ 177 (233)
|++++++..+|.++..+|++++|++.|+++++++|++.. ..-...|. . .-..++++
T Consensus 127 ~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~-~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~ 205 (291)
T 3mkr_A 127 GDSLECMAMTVQILLKLDRLDLARKELKKMQDQDEDATL-TQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNG 205 (291)
T ss_dssp CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH-HHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHH
T ss_pred CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCcHH-HHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHH
Confidence 788888888888888888888888888888888887641 00000010 0 11456788
Q ss_pred hHHHHHHcCCcHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHH-HHHHH
Q 026773 178 KLIRVSHFNRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQLYGVDEA-RNRFL 230 (233)
Q Consensus 178 rG~al~~lGryeeAi~~f~kAL~lnP~d~e~~~~~~l~~a~Lg~~dEA-~~~~l 230 (233)
+|.++..+|++++|++.|+++++++|++++.+.+++.+...+|+.+++ ...+.
T Consensus 206 la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~ 259 (291)
T 3mkr_A 206 QAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVTNRYLS 259 (291)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999775 44444
No 130
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=99.32 E-value=5.4e-12 Score=90.04 Aligned_cols=71 Identities=11% Similarity=0.240 Sum_probs=63.4
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccch-hhhhhhhhhhhhhhHHHHHHcCCcHHHHHHHHHHHHcCCCC
Q 026773 127 AIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGA-YRFTISIVGIILKKLIRVSHFNRFEEGAEQFRIDVAQNPND 205 (233)
Q Consensus 127 y~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~-y~~~~~~~~a~~~rG~al~~lGryeeAi~~f~kAL~lnP~d 205 (233)
.+.+|.+++..|++++|++.|+++++++|+++ . .++ ++|.++..+|++++|++.|+++++++|++
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~-----~~~~~---------~lg~~~~~~~~~~~A~~~~~~al~~~p~~ 68 (99)
T 2kc7_A 3 QLKTIKELINQGDIENALQALEEFLQTEPVGK-----DEAYY---------LMGNAYRKLGDWQKALNNYQSAIELNPDS 68 (99)
T ss_dssp THHHHHHHHHHTCHHHHHHHHHHHHHHCSSTH-----HHHHH---------HHHHHHHHHTCHHHHHHHHHHHHHHCTTS
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcH-----HHHHH---------HHHHHHHHcCCHHHHHHHHHHHHhcCCCc
Confidence 36789999999999999999999999999987 4 433 59999999999999999999999999999
Q ss_pred HHHHHH
Q 026773 206 TEESIW 211 (233)
Q Consensus 206 ~e~~~~ 211 (233)
++.+.+
T Consensus 69 ~~~~~~ 74 (99)
T 2kc7_A 69 PALQAR 74 (99)
T ss_dssp THHHHH
T ss_pred HHHHHH
Confidence 987644
No 131
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=99.29 E-value=1.9e-11 Score=112.56 Aligned_cols=153 Identities=8% Similarity=0.041 Sum_probs=129.3
Q ss_pred HHhhhhccCCcchhhccccccccccccccccchhHH----HhccCcchHHHHHHHHhcccCCCCCHHHHHHHHHHHHHcC
Q 026773 63 HRSLLTSKAPLSVQTHINSLFSTPRGHYLQNRAPTF----TRRLFIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQG 138 (233)
Q Consensus 63 ~~~~~~~~~~~~~~~~~n~~~~~~~~h~~~~~~~~~----~r~~~~~~a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~lG 138 (233)
-|--...+.|+.+....||+........+.++...+ .+..+.++|..++++++ ++||++..+|+.||.++..+|
T Consensus 25 ~~~~w~dv~p~~~~~~~~~~~~i~y~~~y~~~~~~~r~~~~~~e~se~AL~lt~~~L--~~nP~~ytaWn~R~~iL~~l~ 102 (349)
T 3q7a_A 25 QRRSWADVKPIMQDDGPNPVVPIMYSEEYKDAMDYFRAIAAKEEKSERALELTEIIV--RMNPAHYTVWQYRFSLLTSLN 102 (349)
T ss_dssp SCGGGTTCCCCCCCCCSSCSSCBCCCHHHHHHHHHHHHHHHTTCCSHHHHHHHHHHH--HHCTTCHHHHHHHHHHHHHTT
T ss_pred cCcccCCCcccCCCCCCCCeeeeeeCHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHH--HhCchhHHHHHHHHHHHHHhh
Confidence 355677899999988889888777666665554443 23337788999999999 999999999999999999999
Q ss_pred -CHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHHHc-C-CcHHHHHHHHHHHHcCCCCHHHHHHHHHH
Q 026773 139 -DVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSHF-N-RFEEGAEQFRIDVAQNPNDTEESIWCFLC 215 (233)
Q Consensus 139 -dyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~l-G-ryeeAi~~f~kAL~lnP~d~e~~~~~~l~ 215 (233)
+++++++.++++|+++|++. .. |+ .||.++..+ + +++++++.++++++++|.|..+|.+++.+
T Consensus 103 ~~l~eEL~~~~~~L~~nPKny-----~a-W~--------hR~wlL~~l~~~~~~~EL~~~~k~L~~dpkNy~AW~~R~wv 168 (349)
T 3q7a_A 103 KSLEDELRLMNEFAVQNLKSY-----QV-WH--------HRLLLLDRISPQDPVSEIEYIHGSLLPDPKNYHTWAYLHWL 168 (349)
T ss_dssp CCHHHHHHHHHHHHHTTCCCH-----HH-HH--------HHHHHHHHHCCSCCHHHHHHHHHHTSSCTTCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHhCCCcH-----HH-HH--------HHHHHHHHhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 59999999999999999998 33 33 599999998 8 99999999999999999999999999988
Q ss_pred HHHcCCHH--------HHHHHHHh
Q 026773 216 EAQLYGVD--------EARNRFLE 231 (233)
Q Consensus 216 ~a~Lg~~d--------EA~~~~l~ 231 (233)
..++|+++ ++.+...+
T Consensus 169 l~~l~~~~~~~~~~~~eELe~~~k 192 (349)
T 3q7a_A 169 YSHFSTLGRISEAQWGSELDWCNE 192 (349)
T ss_dssp HHHHHHTTCCCHHHHHHHHHHHHH
T ss_pred HHHhccccccchhhHHHHHHHHHH
Confidence 88888777 77776553
No 132
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.28 E-value=9.1e-12 Score=119.69 Aligned_cols=113 Identities=12% Similarity=-0.009 Sum_probs=100.3
Q ss_pred cchHHHHHHHHhcccCCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHH
Q 026773 104 IPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQG--DVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIR 181 (233)
Q Consensus 104 ~~~a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~lG--dyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~a 181 (233)
..++...++.++ +.+|++..+|++||.++..+| ++++|++.++++|++||++. ..|. .||.+
T Consensus 89 ~~~eL~~~~~~l--~~~pK~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~d~~N~------~aW~--------~R~~~ 152 (567)
T 1dce_A 89 VKAELGFLESCL--RVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNF------HCWD--------YRRFV 152 (567)
T ss_dssp HHHHHHHHHHHH--HHCTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCH------HHHH--------HHHHH
T ss_pred HHHHHHHHHHHH--HhCCCCHHHHHHHHHHHHHcccccHHHHHHHHHHHHhhccccc------cHHH--------HHHHH
Confidence 467888999999 999999999999999999999 77999999999999999998 3343 69999
Q ss_pred HHHcC-CcHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHc--------------CCHHHHHHHHHhh
Q 026773 182 VSHFN-RFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQL--------------YGVDEARNRFLEA 232 (233)
Q Consensus 182 l~~lG-ryeeAi~~f~kAL~lnP~d~e~~~~~~l~~a~L--------------g~~dEA~~~~l~~ 232 (233)
+..+| +++++++.++++|+++|+|..+|.+++.++..+ +.+++|.+.+.++
T Consensus 153 l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~a 218 (567)
T 1dce_A 153 AAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNA 218 (567)
T ss_dssp HHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHH
T ss_pred HHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHH
Confidence 99999 999999999999999999999999999888775 4568888776553
No 133
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=99.28 E-value=3.3e-11 Score=95.81 Aligned_cols=110 Identities=11% Similarity=0.160 Sum_probs=90.2
Q ss_pred hHHHhccCcchHHHHHHHHhcccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhh-------
Q 026773 96 PTFTRRLFIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFT------- 168 (233)
Q Consensus 96 ~~~~r~~~~~~a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~------- 168 (233)
..+.+.+-..+|...+..++ +++|+++.+|.++|.++..+|++++|++.|+++++++|++.. ..+.
T Consensus 45 ~~~~~~g~~~~A~~~~~~al--~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~-----~~~~~~~~~~~ 117 (213)
T 1hh8_A 45 CMYTILKNMTEAEKAFTRSI--NRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQL-----IDYKILGLQFK 117 (213)
T ss_dssp HHHHHTTCHHHHHHHHHHHH--HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSE-----EECGGGTBCCE
T ss_pred HHHHHcCCHHHHHHHHHHHH--HhCccchHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccH-----HHHHHhccccC
Confidence 44555556678999999999 889999999999999999999999999999999999998761 1110
Q ss_pred hhhhhhhhhhHHHHHHcCCcHHHHHHHHHHHHcCCCCHHHHHHH
Q 026773 169 ISIVGIILKKLIRVSHFNRFEEGAEQFRIDVAQNPNDTEESIWC 212 (233)
Q Consensus 169 ~~~~~a~~~rG~al~~lGryeeAi~~f~kAL~lnP~d~e~~~~~ 212 (233)
.....++.++|.++..+|++++|++.|+++++++|++....+..
T Consensus 118 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~ 161 (213)
T 1hh8_A 118 LFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPRHSKIDK 161 (213)
T ss_dssp EEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSGGGGHHHH
T ss_pred ccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCcccccchHHH
Confidence 01235677899999999999999999999999999875443333
No 134
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.28 E-value=6.1e-12 Score=101.57 Aligned_cols=124 Identities=10% Similarity=0.073 Sum_probs=99.5
Q ss_pred HHhccCcchHHHHHHHHhcc------cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-----CCCCCCccchhh
Q 026773 98 FTRRLFIPSVSGIWDALTGG------NNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELD-----PRQKISGKGAYR 166 (233)
Q Consensus 98 ~~r~~~~~~a~~i~~~~i~~------~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLd-----P~~~~~~~~~y~ 166 (233)
+...+-...|...+..++.. ..+|..+.++..+|.++..+|++++|++.|++|+++- |+++ .
T Consensus 53 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~-----~-- 125 (283)
T 3edt_B 53 YRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHP-----D-- 125 (283)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCH-----H--
T ss_pred HHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCCh-----H--
Confidence 34444556677777777622 2357788999999999999999999999999999993 3332 1
Q ss_pred hhhhhhhhhhhhHHHHHHcCCcHHHHHHHHHHHHc--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHhh
Q 026773 167 FTISIVGIILKKLIRVSHFNRFEEGAEQFRIDVAQ--------NPNDTEESIWCFLCEAQLYGVDEARNRFLEA 232 (233)
Q Consensus 167 ~~~~~~~a~~~rG~al~~lGryeeAi~~f~kAL~l--------nP~d~e~~~~~~l~~a~Lg~~dEA~~~~l~~ 232 (233)
...++.++|.++..+|++++|++.|++++++ +|.....+..++.++..+|++++|...+.++
T Consensus 126 ----~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 195 (283)
T 3edt_B 126 ----VAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDAETLYKEI 195 (283)
T ss_dssp ----HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 1234567999999999999999999999999 6766777777888899999999999998765
No 135
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.27 E-value=1.4e-11 Score=97.47 Aligned_cols=81 Identities=7% Similarity=-0.066 Sum_probs=70.6
Q ss_pred hHHHHHHHHhcccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHHHc
Q 026773 106 SVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSHF 185 (233)
Q Consensus 106 ~a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~l 185 (233)
.+...+.+++ +++|+++.+++.+|.++...|++++|++.|+++++++|+... ...+ .++|.++..+
T Consensus 92 ~a~~~~~~al--~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~----~~a~--------~~l~~~~~~~ 157 (176)
T 2r5s_A 92 PELKRLEQEL--AANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQD----GEVK--------KTFMDILSAL 157 (176)
T ss_dssp HHHHHHHHHH--HHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTT----THHH--------HHHHHHHHHH
T ss_pred hHHHHHHHHH--HhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccCh----HHHH--------HHHHHHHHHh
Confidence 3577788888 899999999999999999999999999999999999998641 1222 3599999999
Q ss_pred CCcHHHHHHHHHHHH
Q 026773 186 NRFEEGAEQFRIDVA 200 (233)
Q Consensus 186 GryeeAi~~f~kAL~ 200 (233)
|+.++|+..|++++.
T Consensus 158 g~~~~A~~~y~~al~ 172 (176)
T 2r5s_A 158 GQGNAIASKYRRQLY 172 (176)
T ss_dssp CSSCHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHH
Confidence 999999999999875
No 136
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=99.27 E-value=4.2e-12 Score=112.74 Aligned_cols=109 Identities=16% Similarity=0.163 Sum_probs=93.9
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhh--------hhhhhhhhhHHHHHHcCCcHH
Q 026773 119 NNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTI--------SIVGIILKKLIRVSHFNRFEE 190 (233)
Q Consensus 119 l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~--------~~~~a~~~rG~al~~lGryee 190 (233)
..|+.+.++..+|.+++..|+|++|+..|++|++++|++. .+.... -...+++++|.++..+|+|++
T Consensus 174 ~~~~~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~-----~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~ 248 (338)
T 2if4_A 174 ERIGAADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDF-----MFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDE 248 (338)
T ss_dssp HHHHHHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHH-----HHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHH
T ss_pred HHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccch-----hhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHH
Confidence 3466789999999999999999999999999999999765 111100 002367789999999999999
Q ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhh
Q 026773 191 GAEQFRIDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLEA 232 (233)
Q Consensus 191 Ai~~f~kAL~lnP~d~e~~~~~~l~~a~Lg~~dEA~~~~l~~ 232 (233)
|++.|+++++++|+++..++.++.++..+|++++|+..|.++
T Consensus 249 A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~a 290 (338)
T 2if4_A 249 AIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKA 290 (338)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999875
No 137
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.27 E-value=1e-11 Score=109.98 Aligned_cols=126 Identities=10% Similarity=0.006 Sum_probs=95.2
Q ss_pred hccCcchHHHHHHHHh-------cccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhh
Q 026773 100 RRLFIPSVSGIWDALT-------GGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIV 172 (233)
Q Consensus 100 r~~~~~~a~~i~~~~i-------~~~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~ 172 (233)
+.+-..+|...+.+++ +...+|+.+.+|.++|.++..+|++++|+..|++|+++.|.... .+ .+...
T Consensus 63 ~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~----~~--~~~~~ 136 (472)
T 4g1t_A 63 LKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSS----PY--RIESP 136 (472)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC----SS--CCCCH
T ss_pred HCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhccc----cc--chhhH
Confidence 3344456666666654 22458999999999999999999999999999999999876541 11 11223
Q ss_pred hhhhhhHHHHHHcC--CcHHHHHHHHHHHHcCCCCHHHHHHHHHHH---HHcCCHHHHHHHHHh
Q 026773 173 GIILKKLIRVSHFN--RFEEGAEQFRIDVAQNPNDTEESIWCFLCE---AQLYGVDEARNRFLE 231 (233)
Q Consensus 173 ~a~~~rG~al~~lG--ryeeAi~~f~kAL~lnP~d~e~~~~~~l~~---a~Lg~~dEA~~~~l~ 231 (233)
.++.++|.++..+| +|++|+++|+++++++|++++.+...+.+. ...++.++|...+.+
T Consensus 137 ~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~ 200 (472)
T 4g1t_A 137 ELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQ 200 (472)
T ss_dssp HHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHH
T ss_pred HHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHH
Confidence 45667898887765 699999999999999999999877776553 355777777776654
No 138
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=99.26 E-value=1.7e-11 Score=111.10 Aligned_cols=110 Identities=9% Similarity=0.059 Sum_probs=86.7
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCC--ccchhhhhhhhhhhhhhhHHHHHHcCCcHHHHHHHHHHHH
Q 026773 123 EAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKIS--GKGAYRFTISIVGIILKKLIRVSHFNRFEEGAEQFRIDVA 200 (233)
Q Consensus 123 ~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~--~~~~y~~~~~~~~a~~~rG~al~~lGryeeAi~~f~kAL~ 200 (233)
.+.+|..+|.+++..|+|++|++.|++|+++.|+.+.. .+...-.......+++++|.+++.+|+|++|+++++++++
T Consensus 222 ~a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~ 301 (370)
T 1ihg_A 222 ISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALE 301 (370)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence 36779999999999999999999999999943321000 0000000001123556799999999999999999999999
Q ss_pred cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhh
Q 026773 201 QNPNDTEESIWCFLCEAQLYGVDEARNRFLEA 232 (233)
Q Consensus 201 lnP~d~e~~~~~~l~~a~Lg~~dEA~~~~l~~ 232 (233)
++|+++..++.++.++..+|++++|+..+.++
T Consensus 302 ~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~A 333 (370)
T 1ihg_A 302 IDPSNTKALYRRAQGWQGLKEYDQALADLKKA 333 (370)
T ss_dssp TCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hCchhHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 99999999999999999999999999998764
No 139
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=99.25 E-value=4.2e-11 Score=93.60 Aligned_cols=96 Identities=9% Similarity=0.034 Sum_probs=84.3
Q ss_pred HHHhccCcchHHHHHHHHhcccCCCCCHHHHHHHHHH-HHHcCCH--HHHHHHHHHHHhhCCCCCCCccchhhhhhhhhh
Q 026773 97 TFTRRLFIPSVSGIWDALTGGNNNSREAVVAIRRGML-LFRQGDV--VGSVAEFDKAIELDPRQKISGKGAYRFTISIVG 173 (233)
Q Consensus 97 ~~~r~~~~~~a~~i~~~~i~~~l~P~~a~Ay~~RG~a-~~~lGdy--eeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~ 173 (233)
.+.+.+-...|...+..++ +++|+++.++..+|.+ +...|++ ++|+..|+++++++|+++ ..++
T Consensus 53 ~~~~~~~~~~A~~~~~~al--~~~p~~~~~~~~la~~l~~~~~~~~~~~A~~~~~~al~~~p~~~-----~~~~------ 119 (177)
T 2e2e_A 53 YYLWQNDYSNSLLAYRQAL--QLRGENAELYAALATVLYYQASQHMTAQTRAMIDKALALDSNEI-----TALM------ 119 (177)
T ss_dssp HHHHTTCHHHHHHHHHHHH--HHHCSCHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHCTTCH-----HHHH------
T ss_pred HHHHcCCHHHHHHHHHHHH--HcCCCCHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhCCCcH-----HHHH------
Confidence 3444455677888999888 8999999999999999 7899999 999999999999999987 3433
Q ss_pred hhhhhHHHHHHcCCcHHHHHHHHHHHHcCCCCHHH
Q 026773 174 IILKKLIRVSHFNRFEEGAEQFRIDVAQNPNDTEE 208 (233)
Q Consensus 174 a~~~rG~al~~lGryeeAi~~f~kAL~lnP~d~e~ 208 (233)
++|.++...|++++|++.|+++++++|++++.
T Consensus 120 ---~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 151 (177)
T 2e2e_A 120 ---LLASDAFMQANYAQAIELWQKVMDLNSPRINR 151 (177)
T ss_dssp ---HHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCH
T ss_pred ---HHHHHHHHcccHHHHHHHHHHHHhhCCCCccH
Confidence 49999999999999999999999999998754
No 140
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=99.24 E-value=2.6e-12 Score=119.92 Aligned_cols=98 Identities=11% Similarity=0.067 Sum_probs=89.4
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHHHcCCcHHHHHHHHHHHH
Q 026773 121 SREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSHFNRFEEGAEQFRIDVA 200 (233)
Q Consensus 121 P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~lGryeeAi~~f~kAL~ 200 (233)
++.+.++..+|.+++.+|++++|++.|++|++++|+++ ..+. ++|.++..+|++++|++.|+++++
T Consensus 3 ~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~~~-----~~~~---------~lg~~~~~~g~~~~A~~~~~~al~ 68 (477)
T 1wao_1 3 LKRAEELKTQANDYFKAKDYENAIKFYSQAIELNPSNA-----IYYG---------NRSLAYLRTECYGYALGDATRAIE 68 (477)
T ss_dssp HHHHTTSSSSSSSTTTTTCHHHHHHHHHHHHHHCTTCH-----HHHH---------HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccH-----HHHH---------HHHHHHHHhcCHHHHHHHHHHHHH
Confidence 34567788999999999999999999999999999987 3433 599999999999999999999999
Q ss_pred cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhh
Q 026773 201 QNPNDTEESIWCFLCEAQLYGVDEARNRFLEA 232 (233)
Q Consensus 201 lnP~d~e~~~~~~l~~a~Lg~~dEA~~~~l~~ 232 (233)
++|++++.+..++.++..+|++++|...+.++
T Consensus 69 l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~a 100 (477)
T 1wao_1 69 LDKKYIKGYYRRAASNMALGKFRAALRDYETV 100 (477)
T ss_dssp SCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99999999999999999999999999998864
No 141
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.24 E-value=1.6e-11 Score=99.03 Aligned_cols=118 Identities=8% Similarity=0.035 Sum_probs=94.5
Q ss_pred cchHHHHHHHHhcc-----c-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-----CCCCCCccchhhhhhhhh
Q 026773 104 IPSVSGIWDALTGG-----N-NNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELD-----PRQKISGKGAYRFTISIV 172 (233)
Q Consensus 104 ~~~a~~i~~~~i~~-----~-l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLd-----P~~~~~~~~~y~~~~~~~ 172 (233)
.+.|...+.+++.. . .+|..+.++..+|.++..+|++++|+..|++|+++. ++.+ . ..
T Consensus 17 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~------~-----~~ 85 (283)
T 3edt_B 17 RGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHP------A-----VA 85 (283)
T ss_dssp SSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCH------H-----HH
T ss_pred HHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcch------H-----HH
Confidence 34555666655421 1 347889999999999999999999999999999995 3333 1 12
Q ss_pred hhhhhhHHHHHHcCCcHHHHHHHHHHHHc--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHhh
Q 026773 173 GIILKKLIRVSHFNRFEEGAEQFRIDVAQ--------NPNDTEESIWCFLCEAQLYGVDEARNRFLEA 232 (233)
Q Consensus 173 ~a~~~rG~al~~lGryeeAi~~f~kAL~l--------nP~d~e~~~~~~l~~a~Lg~~dEA~~~~l~~ 232 (233)
.++.++|.++...|++++|++.|++++++ +|.....+..++.++..+|++++|...+.++
T Consensus 86 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 153 (283)
T 3edt_B 86 ATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRA 153 (283)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 35667999999999999999999999998 4666666777888889999999999998764
No 142
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.24 E-value=1.9e-11 Score=105.26 Aligned_cols=81 Identities=10% Similarity=0.012 Sum_probs=69.9
Q ss_pred hHHHHHHHHhcccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHHHc
Q 026773 106 SVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSHF 185 (233)
Q Consensus 106 ~a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~l 185 (233)
.+...+.+++ +++|+++++++++|.++...|++++|++.|+++++++|++.. .. ++.++|.++..+
T Consensus 203 ~a~~~l~~al--~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~----~~--------a~~~l~~~~~~~ 268 (287)
T 3qou_A 203 PEIQQLQQQV--AENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAAD----GQ--------TRXTFQEILAAL 268 (287)
T ss_dssp HHHHHHHHHH--HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGG----GH--------HHHHHHHHHHHH
T ss_pred ccHHHHHHHH--hcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccc----ch--------HHHHHHHHHHHc
Confidence 3555666667 889999999999999999999999999999999999998831 12 223699999999
Q ss_pred CCcHHHHHHHHHHHH
Q 026773 186 NRFEEGAEQFRIDVA 200 (233)
Q Consensus 186 GryeeAi~~f~kAL~ 200 (233)
|+.++|+..|++++.
T Consensus 269 g~~~~a~~~~r~al~ 283 (287)
T 3qou_A 269 GTGDALASXYRRQLY 283 (287)
T ss_dssp CTTCHHHHHHHHHHH
T ss_pred CCCCcHHHHHHHHHH
Confidence 999999999999986
No 143
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.22 E-value=1.1e-10 Score=101.25 Aligned_cols=110 Identities=5% Similarity=-0.029 Sum_probs=75.4
Q ss_pred CcchHHHHHHHHhcccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHH
Q 026773 103 FIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRV 182 (233)
Q Consensus 103 ~~~~a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al 182 (233)
-..++...++.++....+|+++.+++.+|.++...|++++|++.+++ |++. ..+. .+|.++
T Consensus 80 ~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~-----~~~~-----~~~~---------~l~~~~ 140 (291)
T 3mkr_A 80 RRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ-----GDSL-----ECMA---------MTVQIL 140 (291)
T ss_dssp THHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT-----CCSH-----HHHH---------HHHHHH
T ss_pred cHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC-----CCCH-----HHHH---------HHHHHH
Confidence 34677888888773335799999999999999999999999999998 7666 2322 244444
Q ss_pred HHc------------------------------------CCcHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHH
Q 026773 183 SHF------------------------------------NRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQLYGVDEAR 226 (233)
Q Consensus 183 ~~l------------------------------------GryeeAi~~f~kAL~lnP~d~e~~~~~~l~~a~Lg~~dEA~ 226 (233)
..+ |++++|++.|+++++.+|+++..+..++.|+.++|++++|.
T Consensus 141 ~~~g~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~ 220 (291)
T 3mkr_A 141 LKLDRLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAE 220 (291)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHCCCHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHH
Confidence 444 45555555555555555555555555556666666777666
Q ss_pred HHHHh
Q 026773 227 NRFLE 231 (233)
Q Consensus 227 ~~~l~ 231 (233)
..+.+
T Consensus 221 ~~l~~ 225 (291)
T 3mkr_A 221 GVLQE 225 (291)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66654
No 144
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=99.18 E-value=2e-10 Score=97.84 Aligned_cols=120 Identities=10% Similarity=0.015 Sum_probs=93.9
Q ss_pred ccCcchHHHHHHHHhcccCCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHh---hCCCCCCCccchhhhhhhh
Q 026773 101 RLFIPSVSGIWDALTGGNNNSRE------AVVAIRRGMLLFRQGDVVGSVAEFDKAIE---LDPRQKISGKGAYRFTISI 171 (233)
Q Consensus 101 ~~~~~~a~~i~~~~i~~~l~P~~------a~Ay~~RG~a~~~lGdyeeAIadfdkAIe---LdP~~~~~~~~~y~~~~~~ 171 (233)
.+-.+.|...+.+++ ++.+.. +.+|.++|.++..+|++++|+..|++|++ ..|++. .. .
T Consensus 128 ~~~~~~A~~~~~~al--~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~-----~~-----~ 195 (293)
T 2qfc_A 128 KVDYEYCILELKKLL--NQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNE-----EF-----D 195 (293)
T ss_dssp SSCHHHHHHHHHHHH--TTCCCSSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCH-----HH-----H
T ss_pred CCCHHHHHHHHHHHH--HHHhcCCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccc-----cc-----h
Confidence 335567888888877 333322 67999999999999999999999999994 455433 11 1
Q ss_pred hhhhhhhHHHHHHcCCcHHHHHHHHHHHHcCCC------CHHHHHHHHHHHHHcCCHHHH-HHHHHhh
Q 026773 172 VGIILKKLIRVSHFNRFEEGAEQFRIDVAQNPN------DTEESIWCFLCEAQLYGVDEA-RNRFLEA 232 (233)
Q Consensus 172 ~~a~~~rG~al~~lGryeeAi~~f~kAL~lnP~------d~e~~~~~~l~~a~Lg~~dEA-~~~~l~~ 232 (233)
+.+++++|.++..+|+|++|++.|++++++.++ -+..+...+.++..+|++++| ...+.++
T Consensus 196 ~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~A 263 (293)
T 2qfc_A 196 VKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKA 263 (293)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHH
Confidence 246778999999999999999999999998653 156677788999999999999 6666653
No 145
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.18 E-value=9.6e-11 Score=103.71 Aligned_cols=122 Identities=12% Similarity=0.095 Sum_probs=98.8
Q ss_pred cchHHHHHHHHhcccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhh--------------
Q 026773 104 IPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTI-------------- 169 (233)
Q Consensus 104 ~~~a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~-------------- 169 (233)
...+...+.+++ +++|+++.++.++|.++...|++++|++.|++|++++|+++ ..+...
T Consensus 229 ~~~a~~~~~~al--~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~-----~~~~~lg~~y~~~~~~~~~~ 301 (472)
T 4g1t_A 229 EGEGEKLVEEAL--EKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNA-----YLHCQIGCCYRAKVFQVMNL 301 (472)
T ss_dssp -CHHHHHHHHHH--HHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCH-----HHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHH--HhCccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCChH-----HHHHHHHHHHHHHHHHhhhH
Confidence 356777888887 89999999999999999999999999999999999999987 222110
Q ss_pred ------------------------------hhhhhhhhhHHHHHHcCCcHHHHHHHHHHHHcCCCCHHHH---HHHH-HH
Q 026773 170 ------------------------------SIVGIILKKLIRVSHFNRFEEGAEQFRIDVAQNPNDTEES---IWCF-LC 215 (233)
Q Consensus 170 ------------------------------~~~~a~~~rG~al~~lGryeeAi~~f~kAL~lnP~d~e~~---~~~~-l~ 215 (233)
....++.++|.++..+|++++|++.|+++++++|++.+.. ...+ ++
T Consensus 302 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~ 381 (472)
T 4g1t_A 302 RENGMYGKRKLLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQ 381 (472)
T ss_dssp ------CHHHHHHHHHHHHHHHHHHHHHCTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHhhcCCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHH
Confidence 1155678899999999999999999999999999876542 2222 34
Q ss_pred HHHcCCHHHHHHHHHhh
Q 026773 216 EAQLYGVDEARNRFLEA 232 (233)
Q Consensus 216 ~a~Lg~~dEA~~~~l~~ 232 (233)
..++|++++|+..+.++
T Consensus 382 ~~~~~~~~~Ai~~y~ka 398 (472)
T 4g1t_A 382 LYQMKCEDKAIHHFIEG 398 (472)
T ss_dssp HHTSSCHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHH
Confidence 55789999999998864
No 146
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=99.17 E-value=7.2e-11 Score=86.76 Aligned_cols=78 Identities=10% Similarity=0.100 Sum_probs=71.2
Q ss_pred HHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHHHcCCcHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcC
Q 026773 141 VGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSHFNRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQLY 220 (233)
Q Consensus 141 eeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~lGryeeAi~~f~kAL~lnP~d~e~~~~~~l~~a~Lg 220 (233)
++|++.|+++++++|+++ ..++ ++|.++...|++++|++.|+++++++|++++.+.+++.++..+|
T Consensus 2 ~~a~~~~~~al~~~p~~~-----~~~~---------~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g 67 (115)
T 2kat_A 2 QAITERLEAMLAQGTDNM-----LLRF---------TLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQG 67 (115)
T ss_dssp CCHHHHHHHHHTTTCCCH-----HHHH---------HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHhCCCcH-----HHHH---------HHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcC
Confidence 468999999999999988 3433 59999999999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHhh
Q 026773 221 GVDEARNRFLEA 232 (233)
Q Consensus 221 ~~dEA~~~~l~~ 232 (233)
++++|+..+.++
T Consensus 68 ~~~~A~~~~~~a 79 (115)
T 2kat_A 68 DRAGARQAWESG 79 (115)
T ss_dssp CHHHHHHHHHHH
T ss_pred CHHHHHHHHHHH
Confidence 999999998864
No 147
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.16 E-value=1.6e-10 Score=103.80 Aligned_cols=112 Identities=10% Similarity=0.079 Sum_probs=98.2
Q ss_pred cchHHHHHHHHhcccCCCCCHHHHHHHHHHH----HHc---CCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhh
Q 026773 104 IPSVSGIWDALTGGNNNSREAVVAIRRGMLL----FRQ---GDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIIL 176 (233)
Q Consensus 104 ~~~a~~i~~~~i~~~l~P~~a~Ay~~RG~a~----~~l---GdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~ 176 (233)
..++...++.++ .++|++..+|+.||.++ ... ++++++++.+++++++||++. .. |.
T Consensus 85 ~~eeL~~~~~~L--~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~pkny-----~a-W~-------- 148 (306)
T 3dra_A 85 LYDELDWCEEIA--LDNEKNYQIWNYRQLIIGQIMELNNNDFDPYREFDILEAMLSSDPKNH-----HV-WS-------- 148 (306)
T ss_dssp HHHHHHHHHHHH--HHCTTCCHHHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHCTTCH-----HH-HH--------
T ss_pred HHHHHHHHHHHH--HHCcccHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHhCCCCH-----HH-HH--------
Confidence 466888899998 89999999999999999 777 899999999999999999998 33 43
Q ss_pred hhHHHHHHcCCcH--HHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCC------HHHHHHHHHh
Q 026773 177 KKLIRVSHFNRFE--EGAEQFRIDVAQNPNDTEESIWCFLCEAQLYG------VDEARNRFLE 231 (233)
Q Consensus 177 ~rG~al~~lGrye--eAi~~f~kAL~lnP~d~e~~~~~~l~~a~Lg~------~dEA~~~~l~ 231 (233)
.||.++..+|+++ ++++.+++++++||.|..+|.+++.+...+++ ++++.+.+.+
T Consensus 149 ~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~ 211 (306)
T 3dra_A 149 YRKWLVDTFDLHNDAKELSFVDKVIDTDLKNNSAWSHRFFLLFSKKHLATDNTIDEELNYVKD 211 (306)
T ss_dssp HHHHHHHHTTCTTCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcccChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccchhhhHHHHHHHHHH
Confidence 5999999999988 99999999999999999988888888888887 7888877654
No 148
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.16 E-value=1e-10 Score=102.29 Aligned_cols=128 Identities=12% Similarity=0.053 Sum_probs=101.6
Q ss_pred HHhccCcchHHHHHHHHhcc-cC---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhh
Q 026773 98 FTRRLFIPSVSGIWDALTGG-NN---NSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVG 173 (233)
Q Consensus 98 ~~r~~~~~~a~~i~~~~i~~-~l---~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~ 173 (233)
+.+.+-...|...+.+++.. +. ++..+.++..+|.++..+|++++|+..+++|+++.++.. .+. ...+.
T Consensus 113 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~-----~~~--~~~~~ 185 (383)
T 3ulq_A 113 ELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHE-----AYN--IRLLQ 185 (383)
T ss_dssp HHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCS-----TTH--HHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCc-----cch--HHHHH
Confidence 34445667788889888732 11 234679999999999999999999999999999988776 211 23456
Q ss_pred hhhhhHHHHHHcCCcHHHHHHHHHHHHcCCCCH------HHHHHHHHHHHHcCCHHHHHHHHHhh
Q 026773 174 IILKKLIRVSHFNRFEEGAEQFRIDVAQNPNDT------EESIWCFLCEAQLYGVDEARNRFLEA 232 (233)
Q Consensus 174 a~~~rG~al~~lGryeeAi~~f~kAL~lnP~d~------e~~~~~~l~~a~Lg~~dEA~~~~l~~ 232 (233)
+++++|.++..+|++++|++.|++++++.|... ..+.+++.++..+|++++|...+.++
T Consensus 186 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~a 250 (383)
T 3ulq_A 186 CHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRA 250 (383)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 778899999999999999999999999866432 35666788888999999999998765
No 149
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.16 E-value=9.8e-11 Score=102.45 Aligned_cols=125 Identities=10% Similarity=0.001 Sum_probs=99.5
Q ss_pred hccCcchHHHHHHHHhccc-C----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhh
Q 026773 100 RRLFIPSVSGIWDALTGGN-N----NSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGI 174 (233)
Q Consensus 100 r~~~~~~a~~i~~~~i~~~-l----~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a 174 (233)
..+-...|...+.+++... . .|..+.++.++|.++..+|++++|++.|++|+++.|+... .. ....+
T Consensus 155 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~----~~----~~~~~ 226 (383)
T 3ulq_A 155 YMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQ----PQ----LMGRT 226 (383)
T ss_dssp HTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC----HH----HHHHH
T ss_pred HcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCC----hH----HHHHH
Confidence 3334455666666665210 1 3445789999999999999999999999999999886551 11 23456
Q ss_pred hhhhHHHHHHcCCcHHHHHHHHHHHH-----cC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHhh
Q 026773 175 ILKKLIRVSHFNRFEEGAEQFRIDVA-----QN-PNDTEESIWCFLCEAQLYGVDEARNRFLEA 232 (233)
Q Consensus 175 ~~~rG~al~~lGryeeAi~~f~kAL~-----ln-P~d~e~~~~~~l~~a~Lg~~dEA~~~~l~~ 232 (233)
+.++|.++..+|++++|++.|+++++ .+ |..+..+..++.++..+|++++|...+.++
T Consensus 227 ~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 290 (383)
T 3ulq_A 227 LYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKG 290 (383)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 77899999999999999999999999 56 777777888899999999999999998764
No 150
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=99.16 E-value=2e-11 Score=101.44 Aligned_cols=84 Identities=13% Similarity=0.041 Sum_probs=74.2
Q ss_pred HHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHHHcCCc----------HHHHHHHHHHHHcCCC
Q 026773 135 FRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSHFNRF----------EEGAEQFRIDVAQNPN 204 (233)
Q Consensus 135 ~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~lGry----------eeAi~~f~kAL~lnP~ 204 (233)
-+.+.|++|++.|++|++++|+++ ..+ .++|.++..++++ ++|++.|++||+++|+
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~P~~a-----ea~---------~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~ 78 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSNPLDA-----DNL---------TRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPK 78 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTCH-----HHH---------HHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHhHHHHHHHHHHHHHHHCCCCH-----HHH---------HHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcC
Confidence 456789999999999999999998 333 3599999999886 5999999999999999
Q ss_pred CHHHHHHHHHHHHHcC-----------CHHHHHHHHHhh
Q 026773 205 DTEESIWCFLCEAQLY-----------GVDEARNRFLEA 232 (233)
Q Consensus 205 d~e~~~~~~l~~a~Lg-----------~~dEA~~~~l~~ 232 (233)
++++++.+|.++..+| ++++|...|.++
T Consensus 79 ~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kA 117 (158)
T 1zu2_A 79 KDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQA 117 (158)
T ss_dssp CHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHH
Confidence 9999999999998875 899999999865
No 151
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=99.16 E-value=2.4e-10 Score=104.35 Aligned_cols=112 Identities=12% Similarity=-0.021 Sum_probs=98.2
Q ss_pred cchHHHHHHHHhcccCCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHH
Q 026773 104 IPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQG--DVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIR 181 (233)
Q Consensus 104 ~~~a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~lG--dyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~a 181 (233)
..++..+++.++ ..+|++..+|.+||.++..+| +++++++.+++++++||++. ..|. .||.+
T Consensus 90 l~~EL~~~~~~L--~~~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy------~AW~--------~R~~v 153 (331)
T 3dss_A 90 VKAELGFLESCL--RVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNF------HCWD--------YRRFV 153 (331)
T ss_dssp HHHHHHHHHHHH--HHCTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCH------HHHH--------HHHHH
T ss_pred HHHHHHHHHHHH--HhCCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCCH------HHHH--------HHHHH
Confidence 356778888888 899999999999999999999 49999999999999999998 3344 59999
Q ss_pred HHHcCC-cHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHc--------------CCHHHHHHHHHh
Q 026773 182 VSHFNR-FEEGAEQFRIDVAQNPNDTEESIWCFLCEAQL--------------YGVDEARNRFLE 231 (233)
Q Consensus 182 l~~lGr-yeeAi~~f~kAL~lnP~d~e~~~~~~l~~a~L--------------g~~dEA~~~~l~ 231 (233)
+..+|+ ++++++.++++++.+|+|..+|.+++.++..+ +.++++.+.+.+
T Consensus 154 l~~l~~~~~eel~~~~~~I~~~p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ 218 (331)
T 3dss_A 154 AAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQN 218 (331)
T ss_dssp HHHTTCCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHH
T ss_pred HHHhCcCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHH
Confidence 999999 59999999999999999999999998887776 446777777654
No 152
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=99.15 E-value=3.9e-10 Score=102.99 Aligned_cols=113 Identities=12% Similarity=0.021 Sum_probs=102.4
Q ss_pred CcchHHHHHHHHhcccCCCCCHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHhhCCCCCCCccchhhhhhhhh
Q 026773 103 FIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGD----------VVGSVAEFDKAIELDPRQKISGKGAYRFTISIV 172 (233)
Q Consensus 103 ~~~~a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~lGd----------yeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~ 172 (233)
+.++|..+++.++ .+||++..+|+.||.++..+|+ ++++++.++++++.+|+++ .. |+
T Consensus 45 ~s~eaL~~t~~~L--~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny-----~a-W~---- 112 (331)
T 3dss_A 45 LDESVLELTSQIL--GANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSY-----GT-WH---- 112 (331)
T ss_dssp CSHHHHHHHHHHH--TTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCH-----HH-HH----
T ss_pred CCHHHHHHHHHHH--HHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCH-----HH-HH----
Confidence 7778999999999 9999999999999999998877 7999999999999999998 34 33
Q ss_pred hhhhhhHHHHHHcCC--cHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHh
Q 026773 173 GIILKKLIRVSHFNR--FEEGAEQFRIDVAQNPNDTEESIWCFLCEAQLYG-VDEARNRFLE 231 (233)
Q Consensus 173 ~a~~~rG~al~~lGr--yeeAi~~f~kAL~lnP~d~e~~~~~~l~~a~Lg~-~dEA~~~~l~ 231 (233)
.||.++..+|+ ++++++.++++++++|.|..+|.+++.+...+|. .+++.+.+.+
T Consensus 113 ----hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~ 170 (331)
T 3dss_A 113 ----HRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDS 170 (331)
T ss_dssp ----HHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred ----HHHHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHH
Confidence 59999999995 8999999999999999999999999999999998 5888887764
No 153
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=99.15 E-value=9.8e-11 Score=86.35 Aligned_cols=124 Identities=10% Similarity=-0.081 Sum_probs=93.8
Q ss_pred HhccCcchHHHHHHHHhcccCCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhh
Q 026773 99 TRRLFIPSVSGIWDALTGGNNNSR------EAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIV 172 (233)
Q Consensus 99 ~r~~~~~~a~~i~~~~i~~~l~P~------~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~ 172 (233)
...+-..+|...+.+++ ++.++ .+.++..+|.++..+|++++|++.|++|+++.++.. ... ...
T Consensus 20 ~~~~~~~~A~~~~~~al--~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~-----~~~---~~~ 89 (164)
T 3ro3_A 20 YLLGNFRDAVIAHEQRL--LIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLK-----DRA---VEA 89 (164)
T ss_dssp HHTTCHHHHHHHHHHHH--HHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT-----CHH---HHH
T ss_pred HHhcCHHHHHHHHHHHH--HHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhC-----CcH---HHH
Confidence 33444566777777766 32221 236899999999999999999999999999987654 111 124
Q ss_pred hhhhhhHHHHHHcCCcHHHHHHHHHHHHcCCC--C----HHHHHHHHHHHHHcCCHHHHHHHHHhh
Q 026773 173 GIILKKLIRVSHFNRFEEGAEQFRIDVAQNPN--D----TEESIWCFLCEAQLYGVDEARNRFLEA 232 (233)
Q Consensus 173 ~a~~~rG~al~~lGryeeAi~~f~kAL~lnP~--d----~e~~~~~~l~~a~Lg~~dEA~~~~l~~ 232 (233)
.++.++|.++...|++++|++.+++++++.+. + +..+...+.+...+|++++|...+.++
T Consensus 90 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 155 (164)
T 3ro3_A 90 QSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKH 155 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 56778999999999999999999999987432 1 334455677788999999999998764
No 154
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.14 E-value=1.1e-10 Score=100.68 Aligned_cols=130 Identities=14% Similarity=0.087 Sum_probs=98.0
Q ss_pred chhHHHhccCcchHHHHHHHHhcccCCC----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhh
Q 026773 94 RAPTFTRRLFIPSVSGIWDALTGGNNNS----REAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTI 169 (233)
Q Consensus 94 ~~~~~~r~~~~~~a~~i~~~~i~~~l~P----~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~ 169 (233)
....+.+.+-...|...+.+++...... ..+.++.++|.++.. |++++|++.|++|+++.|... ...
T Consensus 82 lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~-----~~~--- 152 (307)
T 2ifu_A 82 AGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEE-----RLR--- 152 (307)
T ss_dssp HHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTT-----CHH---
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCC-----Chh---
Confidence 3344555556677888888877321112 235789999999988 999999999999999998654 111
Q ss_pred hhhhhhhhhHHHHHHcCCcHHHHHHHHHHHHcCCCCH------HHHHHHHHHHHHcCCHHHHHHHHHhh
Q 026773 170 SIVGIILKKLIRVSHFNRFEEGAEQFRIDVAQNPNDT------EESIWCFLCEAQLYGVDEARNRFLEA 232 (233)
Q Consensus 170 ~~~~a~~~rG~al~~lGryeeAi~~f~kAL~lnP~d~------e~~~~~~l~~a~Lg~~dEA~~~~l~~ 232 (233)
....++.++|.++..+|+|++|++.|++++++.|++. ..+...+.|...+|++++|...|.++
T Consensus 153 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~a 221 (307)
T 2ifu_A 153 QAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRES 221 (307)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 1245677899999999999999999999999977543 23444556677789999999998875
No 155
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.13 E-value=8.3e-11 Score=101.54 Aligned_cols=125 Identities=11% Similarity=0.013 Sum_probs=98.0
Q ss_pred HHHhccCcchHHHHHHHHhcccCCC------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhh
Q 026773 97 TFTRRLFIPSVSGIWDALTGGNNNS------REAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTIS 170 (233)
Q Consensus 97 ~~~r~~~~~~a~~i~~~~i~~~l~P------~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~ 170 (233)
.+...+-+..|...|..++ ++.+ .-+.+|.++|.++..+|++++|+..|++|+++.++.. ... .
T Consensus 45 ~~~~~g~~~~A~~~~~~al--~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g-----~~~---~ 114 (307)
T 2ifu_A 45 AFKNAKQLEQAKDAYLQEA--EAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENG-----TPD---T 114 (307)
T ss_dssp HHHHTTCHHHHHHHHHHHH--HHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTT-----CHH---H
T ss_pred HHHHcCCHHHHHHHHHHHH--HHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcC-----CHH---H
Confidence 3444455677778888776 3322 2367999999999999999999999999999976544 111 2
Q ss_pred hhhhhhhhHHHHHHcCCcHHHHHHHHHHHHcCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHhh
Q 026773 171 IVGIILKKLIRVSHFNRFEEGAEQFRIDVAQNPND------TEESIWCFLCEAQLYGVDEARNRFLEA 232 (233)
Q Consensus 171 ~~~a~~~rG~al~~lGryeeAi~~f~kAL~lnP~d------~e~~~~~~l~~a~Lg~~dEA~~~~l~~ 232 (233)
...++.++|.++.. |++++|++.|++++++.|.. ...+...+.++..+|++++|+..+.++
T Consensus 115 ~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 181 (307)
T 2ifu_A 115 AAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKE 181 (307)
T ss_dssp HHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 34567789999999 99999999999999998754 345566778888999999999998764
No 156
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.13 E-value=1.5e-09 Score=90.08 Aligned_cols=47 Identities=13% Similarity=0.303 Sum_probs=26.9
Q ss_pred cchHHHHHHHHhcccCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhC
Q 026773 104 IPSVSGIWDALTGGNNNSREAVVAIRRGMLLFR----QGDVVGSVAEFDKAIELD 154 (233)
Q Consensus 104 ~~~a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~----lGdyeeAIadfdkAIeLd 154 (233)
..+|...+.+++ + |+++.+++.+|.++.. .|++++|++.|++|++++
T Consensus 22 ~~~A~~~~~~a~--~--~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~ 72 (273)
T 1ouv_A 22 FTQAKKYFEKAC--D--LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN 72 (273)
T ss_dssp HHHHHHHHHHHH--H--TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHH--H--CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC
Confidence 344555555554 2 5555666666666666 666666666666666554
No 157
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=99.12 E-value=2.5e-10 Score=89.26 Aligned_cols=125 Identities=14% Similarity=0.072 Sum_probs=94.5
Q ss_pred HHhccCcchHHHHHHHHhcc----cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh---CCCCCCCccchhhhhhh
Q 026773 98 FTRRLFIPSVSGIWDALTGG----NNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIEL---DPRQKISGKGAYRFTIS 170 (233)
Q Consensus 98 ~~r~~~~~~a~~i~~~~i~~----~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeL---dP~~~~~~~~~y~~~~~ 170 (233)
+...+-...|...+.+++.. ...|..+.++.++|.++..+|++++|++.+++|+++ .|+++ ..
T Consensus 36 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-----~~----- 105 (203)
T 3gw4_A 36 YAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDP-----LA----- 105 (203)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCH-----HH-----
T ss_pred HHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccH-----HH-----
Confidence 33444556677777777621 145677899999999999999999999999999999 33222 01
Q ss_pred hhhhhhhhHHHHHHcCCcHHHHHHHHHHHHcCC--CCHH----HHHHHHHHHHHcCCHHHHHHHHHhh
Q 026773 171 IVGIILKKLIRVSHFNRFEEGAEQFRIDVAQNP--NDTE----ESIWCFLCEAQLYGVDEARNRFLEA 232 (233)
Q Consensus 171 ~~~a~~~rG~al~~lGryeeAi~~f~kAL~lnP--~d~e----~~~~~~l~~a~Lg~~dEA~~~~l~~ 232 (233)
...++.++|.++..+|++++|++.+++++++.+ +++. .+.+++.+...+|++++|...+.++
T Consensus 106 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 173 (203)
T 3gw4_A 106 ASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRA 173 (203)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 123566899999999999999999999997643 2332 2345667788999999999998765
No 158
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=99.12 E-value=2.6e-10 Score=84.06 Aligned_cols=102 Identities=9% Similarity=-0.025 Sum_probs=84.1
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHHHcCCcHHHHHHHHHHHHcC
Q 026773 123 EAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSHFNRFEEGAEQFRIDVAQN 202 (233)
Q Consensus 123 ~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~lGryeeAi~~f~kAL~ln 202 (233)
.+.++..+|.++...|++++|++.+++|+++.|+.. ... ..+.++.++|.++..+|++++|++.+++++++.
T Consensus 8 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~-----~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 79 (164)
T 3ro3_A 8 QGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFG-----DKA---AERIAYSNLGNAYIFLGEFETASEYYKKTLLLA 79 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT-----CHH---HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhC-----Cch---HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 367899999999999999999999999999987644 111 124567789999999999999999999999986
Q ss_pred CCC------HHHHHHHHHHHHHcCCHHHHHHHHHhh
Q 026773 203 PND------TEESIWCFLCEAQLYGVDEARNRFLEA 232 (233)
Q Consensus 203 P~d------~e~~~~~~l~~a~Lg~~dEA~~~~l~~ 232 (233)
++. ...+.+.+.+...+|++++|...+.++
T Consensus 80 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 115 (164)
T 3ro3_A 80 RQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKH 115 (164)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 543 344566677888999999999988764
No 159
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=99.11 E-value=4.6e-10 Score=95.56 Aligned_cols=123 Identities=10% Similarity=-0.050 Sum_probs=95.1
Q ss_pred CcchHHHHHHHHhcccCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhh
Q 026773 103 FIPSVSGIWDALTGGNNNSRE----AVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKK 178 (233)
Q Consensus 103 ~~~~a~~i~~~~i~~~l~P~~----a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~r 178 (233)
-...|...+..++.......+ +.++.++|.++..+|++++|+..|++|+++-...+ .. ....+.+++++
T Consensus 130 ~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~-----~~--~~~~~~~~~nl 202 (293)
T 3u3w_A 130 DYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALH-----DN--EEFDVKVRYNH 202 (293)
T ss_dssp CHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSS-----CC--HHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcc-----cc--hhHHHHHHHHH
Confidence 446677888888732222222 45899999999999999999999999997543321 00 01234577899
Q ss_pred HHHHHHcCCcHHHHHHHHHHHHcCCCC------HHHHHHHHHHHHHcCC-HHHHHHHHHhh
Q 026773 179 LIRVSHFNRFEEGAEQFRIDVAQNPND------TEESIWCFLCEAQLYG-VDEARNRFLEA 232 (233)
Q Consensus 179 G~al~~lGryeeAi~~f~kAL~lnP~d------~e~~~~~~l~~a~Lg~-~dEA~~~~l~~ 232 (233)
|.++..+|+|++|++.+++++++.++. +..+...|.|+..+|+ +++|...+.++
T Consensus 203 g~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~A 263 (293)
T 3u3w_A 203 AKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKA 263 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHH
Confidence 999999999999999999999987654 6677888999999995 69999988765
No 160
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.11 E-value=9.1e-11 Score=96.52 Aligned_cols=123 Identities=10% Similarity=0.073 Sum_probs=98.0
Q ss_pred HhccCcchHHHHHHHHhcc------cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-----CCCCCCccchhhh
Q 026773 99 TRRLFIPSVSGIWDALTGG------NNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELD-----PRQKISGKGAYRF 167 (233)
Q Consensus 99 ~r~~~~~~a~~i~~~~i~~------~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLd-----P~~~~~~~~~y~~ 167 (233)
.+.+-...|...+..++.. ..+|..+.++..+|.++..+|++++|++.|++++++. ++.+ ..
T Consensus 80 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~-----~~-- 152 (311)
T 3nf1_A 80 RDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHP-----DV-- 152 (311)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCH-----HH--
T ss_pred HHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCCh-----HH--
Confidence 3334445666777776621 2257788999999999999999999999999999995 3333 11
Q ss_pred hhhhhhhhhhhHHHHHHcCCcHHHHHHHHHHHHc--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHhh
Q 026773 168 TISIVGIILKKLIRVSHFNRFEEGAEQFRIDVAQ--------NPNDTEESIWCFLCEAQLYGVDEARNRFLEA 232 (233)
Q Consensus 168 ~~~~~~a~~~rG~al~~lGryeeAi~~f~kAL~l--------nP~d~e~~~~~~l~~a~Lg~~dEA~~~~l~~ 232 (233)
..++.++|.++...|++++|++.|++++++ +|.....+...+.++..+|++++|...+.++
T Consensus 153 ----~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 221 (311)
T 3nf1_A 153 ----AKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEI 221 (311)
T ss_dssp ----HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred ----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 234567999999999999999999999998 6666666777788899999999999998764
No 161
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=99.11 E-value=2.6e-09 Score=90.89 Aligned_cols=127 Identities=6% Similarity=-0.087 Sum_probs=99.7
Q ss_pred hHHHhccCcchHHHHHHHHhcccCCCCCH------HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhh
Q 026773 96 PTFTRRLFIPSVSGIWDALTGGNNNSREA------VVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTI 169 (233)
Q Consensus 96 ~~~~r~~~~~~a~~i~~~~i~~~l~P~~a------~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~ 169 (233)
..+.+.+-.+.|...+..++ +..|... ..++.+|.++...|++++|+..|++|+++.++.. .. +
T Consensus 83 ~~~~~~~~y~~A~~~~~~~l--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~-----~~-~-- 152 (293)
T 2qfc_A 83 IMLCKQKRYKEIYNKVWNEL--KKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGI-----DV-Y-- 152 (293)
T ss_dssp HHHHHTTCHHHHHHHHHHHH--HTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSS-----CT-T--
T ss_pred HHHHHhhhHHHHHHHHHHHh--ccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCC-----ch-H--
Confidence 34445555567777888777 5555544 4577899999999999999999999999988654 11 1
Q ss_pred hhhhhhhhhHHHHHHcCCcHHHHHHHHHHH---HcCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHhh
Q 026773 170 SIVGIILKKLIRVSHFNRFEEGAEQFRIDV---AQNPNDT----EESIWCFLCEAQLYGVDEARNRFLEA 232 (233)
Q Consensus 170 ~~~~a~~~rG~al~~lGryeeAi~~f~kAL---~lnP~d~----e~~~~~~l~~a~Lg~~dEA~~~~l~~ 232 (233)
..+.+++++|.++..+|++++|++.|++++ +..|++. ..+.+.+.++..+|++++|...+.++
T Consensus 153 ~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~ka 222 (293)
T 2qfc_A 153 QNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKA 222 (293)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHH
Confidence 124577889999999999999999999999 5567654 45667788899999999999998764
No 162
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.10 E-value=1e-09 Score=91.10 Aligned_cols=95 Identities=11% Similarity=0.061 Sum_probs=72.5
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHHH----cCCcHHHHHHH
Q 026773 120 NSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSH----FNRFEEGAEQF 195 (233)
Q Consensus 120 ~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~----lGryeeAi~~f 195 (233)
+|+++.+++.+|.++...|++++|+..|++|++ |+++ ..++ ++|.++.. .|++++|++.|
T Consensus 2 ~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~--~~~~-----~a~~---------~lg~~~~~g~~~~~~~~~A~~~~ 65 (273)
T 1ouv_A 2 AEQDPKELVGLGAKSYKEKDFTQAKKYFEKACD--LKEN-----SGCF---------NLGVLYYQGQGVEKNLKKAASFY 65 (273)
T ss_dssp ---CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TTCH-----HHHH---------HHHHHHHHTSSSCCCHHHHHHHH
T ss_pred CCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHH--CCCH-----HHHH---------HHHHHHHcCCCcCCCHHHHHHHH
Confidence 689999999999999999999999999999999 5554 2323 47777777 77778888888
Q ss_pred HHHHHcCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHhh
Q 026773 196 RIDVAQNPNDTEESIWCFLCEAQ----LYGVDEARNRFLEA 232 (233)
Q Consensus 196 ~kAL~lnP~d~e~~~~~~l~~a~----Lg~~dEA~~~~l~~ 232 (233)
+++++++ +++.+..++.++.. .+++++|...+.++
T Consensus 66 ~~a~~~~--~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a 104 (273)
T 1ouv_A 66 AKACDLN--YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKA 104 (273)
T ss_dssp HHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHH
T ss_pred HHHHHCC--CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHH
Confidence 7777775 56666777777777 77777777777653
No 163
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.10 E-value=1.6e-10 Score=95.04 Aligned_cols=127 Identities=7% Similarity=0.038 Sum_probs=100.6
Q ss_pred hhHHHhccCcchHHHHHHHHhcc------cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-----CCCCCCccc
Q 026773 95 APTFTRRLFIPSVSGIWDALTGG------NNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELD-----PRQKISGKG 163 (233)
Q Consensus 95 ~~~~~r~~~~~~a~~i~~~~i~~------~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLd-----P~~~~~~~~ 163 (233)
...+.+.+-...|...+..++.. ..+|..+.++..+|.++...|++++|+..|++++++. ++.+
T Consensus 34 ~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~----- 108 (311)
T 3nf1_A 34 VIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHP----- 108 (311)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCH-----
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCCh-----
Confidence 34455556667788888888721 1478889999999999999999999999999999984 3222
Q ss_pred hhhhhhhhhhhhhhhHHHHHHcCCcHHHHHHHHHHHHcC--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHhh
Q 026773 164 AYRFTISIVGIILKKLIRVSHFNRFEEGAEQFRIDVAQN--------PNDTEESIWCFLCEAQLYGVDEARNRFLEA 232 (233)
Q Consensus 164 ~y~~~~~~~~a~~~rG~al~~lGryeeAi~~f~kAL~ln--------P~d~e~~~~~~l~~a~Lg~~dEA~~~~l~~ 232 (233)
. ...++.++|.++...|++++|++.|++++++. |.....+..++.++..+|++++|...+.++
T Consensus 109 ~------~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 179 (311)
T 3nf1_A 109 A------VAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRA 179 (311)
T ss_dssp H------HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred H------HHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 1 12345679999999999999999999999984 444555666778888999999999998764
No 164
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=99.09 E-value=9.1e-10 Score=93.73 Aligned_cols=128 Identities=8% Similarity=-0.093 Sum_probs=99.2
Q ss_pred hhHHHhccCcchHHHHHHHHhcccCCCCCHH------HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhh
Q 026773 95 APTFTRRLFIPSVSGIWDALTGGNNNSREAV------VAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFT 168 (233)
Q Consensus 95 ~~~~~r~~~~~~a~~i~~~~i~~~l~P~~a~------Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~ 168 (233)
+..+.+.+-.+.+..++.+++ +..+.+++ .+..+|.++...|++++|+..|++|+++.+... ...
T Consensus 82 i~~~~~~~~y~~a~~~~~~~l--~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~-----~~~-- 152 (293)
T 3u3w_A 82 VIMLCKQKRYKEIYNKVWNEL--KKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGI-----DVY-- 152 (293)
T ss_dssp HHHHHHTTCHHHHHHHHHHHH--TTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCS-----CTT--
T ss_pred HHHHHHHhhHHHHHHHHHHHh--ccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccc-----cHH--
Confidence 444555666778999999988 66666655 334588888889999999999999999887765 121
Q ss_pred hhhhhhhhhhHHHHHHcCCcHHHHHHHHHHHHc-------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHhh
Q 026773 169 ISIVGIILKKLIRVSHFNRFEEGAEQFRIDVAQ-------NPNDTEESIWCFLCEAQLYGVDEARNRFLEA 232 (233)
Q Consensus 169 ~~~~~a~~~rG~al~~lGryeeAi~~f~kAL~l-------nP~d~e~~~~~~l~~a~Lg~~dEA~~~~l~~ 232 (233)
..+.+++++|.++..+|++++|++.|++++++ .+..+..+.+.+.++..+|++++|...+.++
T Consensus 153 -~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~a 222 (293)
T 3u3w_A 153 -QNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKA 222 (293)
T ss_dssp -HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 23457789999999999999999999999952 1222334567788899999999999988764
No 165
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=99.08 E-value=2.8e-11 Score=86.44 Aligned_cols=92 Identities=7% Similarity=0.089 Sum_probs=76.4
Q ss_pred hHHHhccCcchHHHHHHHHhcccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhh
Q 026773 96 PTFTRRLFIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGII 175 (233)
Q Consensus 96 ~~~~r~~~~~~a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~ 175 (233)
..+.+.+-..+|...|++++ +++|+++.+|.++|.++..+|++++|+++|++|++++|++.. .. + ...++
T Consensus 12 ~~~~~~~~~~~A~~~~~~al--~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~----~~-~---~~~~~ 81 (111)
T 2l6j_A 12 NSLFKQGLYREAVHCYDQLI--TAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEH----VA-I---RSKLQ 81 (111)
T ss_dssp HHHHTTTCHHHHHHHHHHHH--HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTS----HH-H---HHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHH--hcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccH----HH-H---HHHHH
Confidence 34445556678999999999 899999999999999999999999999999999999999841 11 1 13456
Q ss_pred hhhHHHHHHcCCcHHHHHHHHH
Q 026773 176 LKKLIRVSHFNRFEEGAEQFRI 197 (233)
Q Consensus 176 ~~rG~al~~lGryeeAi~~f~k 197 (233)
.++|.++..+|++++|++.+++
T Consensus 82 ~~~~~~~~~~~~~~~a~~~~~~ 103 (111)
T 2l6j_A 82 YRLELAQGAVGSVQIPVVEVDE 103 (111)
T ss_dssp HHHHHHHHHHHCCCCCSSSSSS
T ss_pred HHHHHHHHHHHhHhhhHhHHHH
Confidence 6799999999999999887764
No 166
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.08 E-value=1.6e-10 Score=100.25 Aligned_cols=127 Identities=9% Similarity=-0.033 Sum_probs=102.0
Q ss_pred hHHHhccCcchHHHHHHHHhcccCCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhh
Q 026773 96 PTFTRRLFIPSVSGIWDALTGGNNNSREA----VVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISI 171 (233)
Q Consensus 96 ~~~~r~~~~~~a~~i~~~~i~~~l~P~~a----~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~ 171 (233)
..+.+.+-...|...+..++ +++|+++ .+|..+|.++..+|++++|++.|++|+++...... .. ..
T Consensus 56 ~~~~~~g~~~~A~~~~~~al--~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~---~~-----~~ 125 (411)
T 4a1s_A 56 ERLCNAGDCRAGVAFFQAAI--QAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMND---RL-----GE 125 (411)
T ss_dssp HHHHHTTCHHHHHHHHHHHH--HHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTC---HH-----HH
T ss_pred HHHHHhCcHHHHHHHHHHHH--HhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccC---ch-----HH
Confidence 44555666778999999999 7899987 68999999999999999999999999999422110 00 11
Q ss_pred hhhhhhhHHHHHHcCCcHHHHHHHHHHHHc------CCCCHHHHHHHHHHHHHcCC-----------------HHHHHHH
Q 026773 172 VGIILKKLIRVSHFNRFEEGAEQFRIDVAQ------NPNDTEESIWCFLCEAQLYG-----------------VDEARNR 228 (233)
Q Consensus 172 ~~a~~~rG~al~~lGryeeAi~~f~kAL~l------nP~d~e~~~~~~l~~a~Lg~-----------------~dEA~~~ 228 (233)
..++.++|.++..+|++++|++.|++++++ +|.....+..++.++..+|+ +++|...
T Consensus 126 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~ 205 (411)
T 4a1s_A 126 AKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEF 205 (411)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHH
Confidence 235567999999999999999999999999 56666677778888889999 8888887
Q ss_pred HHhh
Q 026773 229 FLEA 232 (233)
Q Consensus 229 ~l~~ 232 (233)
+.++
T Consensus 206 ~~~a 209 (411)
T 4a1s_A 206 YQEN 209 (411)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 7653
No 167
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=99.07 E-value=1.2e-09 Score=85.32 Aligned_cols=118 Identities=8% Similarity=0.000 Sum_probs=90.1
Q ss_pred chHHHHHHHHhcccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHHH
Q 026773 105 PSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSH 184 (233)
Q Consensus 105 ~~a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~ 184 (233)
..|..+...+. ...+..+.++..+|.++..+|++++|++.|++|+++-..... . .....++.++|.++..
T Consensus 9 ~~A~~~~~~~~--~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~-----~---~~~~~~~~~l~~~~~~ 78 (203)
T 3gw4_A 9 ALAERQAQALL--AHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGD-----H---TAEHRALHQVGMVERM 78 (203)
T ss_dssp HHHHHHHHHHH--TSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCC-----H---HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhc--CChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCC-----c---HHHHHHHHHHHHHHHH
Confidence 44555443444 223378999999999999999999999999999997554331 1 0123466789999999
Q ss_pred cCCcHHHHHHHHHHHHc---CCCCH----HHHHHHHHHHHHcCCHHHHHHHHHhh
Q 026773 185 FNRFEEGAEQFRIDVAQ---NPNDT----EESIWCFLCEAQLYGVDEARNRFLEA 232 (233)
Q Consensus 185 lGryeeAi~~f~kAL~l---nP~d~----e~~~~~~l~~a~Lg~~dEA~~~~l~~ 232 (233)
+|++++|++.+++++++ .++++ ..+...+.+...+|++++|...+.++
T Consensus 79 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 133 (203)
T 3gw4_A 79 AGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKS 133 (203)
T ss_dssp TTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 99999999999999998 55443 33455677788999999999988764
No 168
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.06 E-value=4.4e-10 Score=98.58 Aligned_cols=127 Identities=9% Similarity=-0.156 Sum_probs=100.4
Q ss_pred HHhccCcchHHHHHHHHhcc-cC----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhh
Q 026773 98 FTRRLFIPSVSGIWDALTGG-NN----NSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIV 172 (233)
Q Consensus 98 ~~r~~~~~~a~~i~~~~i~~-~l----~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~ 172 (233)
+...+-...|...+.+++.. .. .+..+.++.++|.++..+|++++|++.|++|+++.++... .. ...
T Consensus 151 y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~----~~----~~~ 222 (378)
T 3q15_A 151 YYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQN----DR----FIA 222 (378)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC----HH----HHH
T ss_pred HHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCC----HH----HHH
Confidence 33344445666666666521 11 2235789999999999999999999999999999764431 11 234
Q ss_pred hhhhhhHHHHHHcCCcHHHHHHHHHHHH-----cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhh
Q 026773 173 GIILKKLIRVSHFNRFEEGAEQFRIDVA-----QNPNDTEESIWCFLCEAQLYGVDEARNRFLEA 232 (233)
Q Consensus 173 ~a~~~rG~al~~lGryeeAi~~f~kAL~-----lnP~d~e~~~~~~l~~a~Lg~~dEA~~~~l~~ 232 (233)
.++.++|.++..+|++++|++.|+++++ .+|..+..+...+.+..++|++++|...+.++
T Consensus 223 ~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 287 (378)
T 3q15_A 223 ISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEG 287 (378)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 5778899999999999999999999999 88888888888899999999999999998764
No 169
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=99.05 E-value=5.7e-10 Score=102.75 Aligned_cols=112 Identities=14% Similarity=0.139 Sum_probs=100.5
Q ss_pred cchHHHHHHHHhcccCCCCCHHHHHHHHHHHHHc-C-CHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHH
Q 026773 104 IPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQ-G-DVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIR 181 (233)
Q Consensus 104 ~~~a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~l-G-dyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~a 181 (233)
..++...++.++ ..+|++..+|..||.++..+ + +++++++.++++|++||++. ..|. .||.+
T Consensus 105 l~eEL~~~~~~L--~~nPKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~dpkNy------~AW~--------~R~wv 168 (349)
T 3q7a_A 105 LEDELRLMNEFA--VQNLKSYQVWHHRLLLLDRISPQDPVSEIEYIHGSLLPDPKNY------HTWA--------YLHWL 168 (349)
T ss_dssp HHHHHHHHHHHH--HTTCCCHHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSSCTTCH------HHHH--------HHHHH
T ss_pred HHHHHHHHHHHH--HhCCCcHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCH------HHHH--------HHHHH
Confidence 456788888888 99999999999999999998 8 99999999999999999998 3343 59999
Q ss_pred HHHcCCcH--------HHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCC-------HHHHHHHHHh
Q 026773 182 VSHFNRFE--------EGAEQFRIDVAQNPNDTEESIWCFLCEAQLYG-------VDEARNRFLE 231 (233)
Q Consensus 182 l~~lGrye--------eAi~~f~kAL~lnP~d~e~~~~~~l~~a~Lg~-------~dEA~~~~l~ 231 (233)
+..+|+++ ++++.+++++++||.|..+|.+++.+..++++ ++++.+.+.+
T Consensus 169 l~~l~~~~~~~~~~~~eELe~~~k~I~~dp~N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~ 233 (349)
T 3q7a_A 169 YSHFSTLGRISEAQWGSELDWCNEMLRVDGRNNSAWGWRWYLRVSRPGAETSSRSLQDELIYILK 233 (349)
T ss_dssp HHHHHHTTCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHH
T ss_pred HHHhccccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccccchHHHHHHHHHHHH
Confidence 99999998 99999999999999999999999999988887 6788877654
No 170
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.05 E-value=7.2e-10 Score=101.94 Aligned_cols=111 Identities=14% Similarity=0.068 Sum_probs=92.6
Q ss_pred hHHHHHHHHhcccCCCCCHHHHHHHHHHHHH-------cCCHH-------HHHHHHHHHHh-hCCCCCCCccchhhhhhh
Q 026773 106 SVSGIWDALTGGNNNSREAVVAIRRGMLLFR-------QGDVV-------GSVAEFDKAIE-LDPRQKISGKGAYRFTIS 170 (233)
Q Consensus 106 ~a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~-------lGdye-------eAIadfdkAIe-LdP~~~~~~~~~y~~~~~ 170 (233)
.+..+|.+++ +.+|+++++|..+|..+.. .|+++ +|++.|++|++ ++|++. ..|.
T Consensus 256 ~a~~~y~~al--~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~------~l~~-- 325 (530)
T 2ooe_A 256 RVMFAYEQCL--LVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNM------LLYF-- 325 (530)
T ss_dssp HHHHHHHHHH--HHHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCH------HHHH--
T ss_pred HHHHHHHHHH--HhCCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccH------HHHH--
Confidence 3456888888 8899999999999999987 79987 99999999998 899887 3333
Q ss_pred hhhhhhhhHHHHHHcCCcHHHHHHHHHHHHcCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHhh
Q 026773 171 IVGIILKKLIRVSHFNRFEEGAEQFRIDVAQNPNDT-EESIWCFLCEAQLYGVDEARNRFLEA 232 (233)
Q Consensus 171 ~~~a~~~rG~al~~lGryeeAi~~f~kAL~lnP~d~-e~~~~~~l~~a~Lg~~dEA~~~~l~~ 232 (233)
.+|..+...|++++|.+.|+++++++|+++ ..|...+.++.++|+.++|+..|.++
T Consensus 326 ------~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~A 382 (530)
T 2ooe_A 326 ------AYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKA 382 (530)
T ss_dssp ------HHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ------HHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 589999999999999999999999999886 35555555666788888988888764
No 171
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.04 E-value=7.5e-10 Score=82.87 Aligned_cols=74 Identities=15% Similarity=0.123 Sum_probs=67.7
Q ss_pred CCCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHHHcCCcHHHHHHHH
Q 026773 120 NSREAVVAIRRGMLLFRQGD---VVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSHFNRFEEGAEQFR 196 (233)
Q Consensus 120 ~P~~a~Ay~~RG~a~~~lGd---yeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~lGryeeAi~~f~ 196 (233)
+|++++++..+|.+++..++ .++|...+++|+++||+++ ...+. +|.+++..|+|++|++.|+
T Consensus 2 ~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~-----rA~~~---------lg~~~~~~g~y~~Ai~~w~ 67 (93)
T 3bee_A 2 NAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNE-----AALSL---------IANDHFISFRFQEAIDTWV 67 (93)
T ss_dssp CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCH-----HHHHH---------HHHHHHHTTCHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCH-----HHHHH---------HHHHHHHcCCHHHHHHHHH
Confidence 69999999999999998877 7999999999999999998 45444 8999999999999999999
Q ss_pred HHHHcCCCCHH
Q 026773 197 IDVAQNPNDTE 207 (233)
Q Consensus 197 kAL~lnP~d~e 207 (233)
++++.+|.++.
T Consensus 68 ~~l~~~p~~~~ 78 (93)
T 3bee_A 68 LLLDSNDPNLD 78 (93)
T ss_dssp HHHTCCCTTCC
T ss_pred HHHhhCCCCcc
Confidence 99999998543
No 172
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.04 E-value=3e-10 Score=96.90 Aligned_cols=125 Identities=8% Similarity=-0.146 Sum_probs=89.8
Q ss_pred HHhccCcchHHHHHHHHhcccCCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhh
Q 026773 98 FTRRLFIPSVSGIWDALTGGNNNSRE------AVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISI 171 (233)
Q Consensus 98 ~~r~~~~~~a~~i~~~~i~~~l~P~~------a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~ 171 (233)
+.+.+-...|...+.+++ ++.|+. +.++.++|.++..+|++++|+..+++++++.|+... .. ..
T Consensus 197 ~~~~g~~~~A~~~~~~al--~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~-----~~---~~ 266 (406)
T 3sf4_A 197 HYLLGNFRDAVIAHEQRL--LIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKD-----RA---VE 266 (406)
T ss_dssp HHHHTBHHHHHHHHHHHH--HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC-----HH---HH
T ss_pred HHHccCHHHHHHHHHHHH--HHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcC-----ch---HH
Confidence 333444556666666666 333322 348888888888888888888888888888876541 11 12
Q ss_pred hhhhhhhHHHHHHcCCcHHHHHHHHHHHHcCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHhh
Q 026773 172 VGIILKKLIRVSHFNRFEEGAEQFRIDVAQNPND------TEESIWCFLCEAQLYGVDEARNRFLEA 232 (233)
Q Consensus 172 ~~a~~~rG~al~~lGryeeAi~~f~kAL~lnP~d------~e~~~~~~l~~a~Lg~~dEA~~~~l~~ 232 (233)
..++.++|.++...|++++|++.|++++++.+.. +..+..++.++..+|++++|...+.++
T Consensus 267 ~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 333 (406)
T 3sf4_A 267 AQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKH 333 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4466678999999999999999999999886543 445556677778889999999888764
No 173
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.03 E-value=3.6e-10 Score=92.56 Aligned_cols=126 Identities=7% Similarity=-0.046 Sum_probs=99.1
Q ss_pred HHHhccCcchHHHHHHHHhcccCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhh
Q 026773 97 TFTRRLFIPSVSGIWDALTGGNNNSRE----AVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIV 172 (233)
Q Consensus 97 ~~~r~~~~~~a~~i~~~~i~~~l~P~~----a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~ 172 (233)
.+.+.+-.+.|...+.+++ +++|++ +.++..+|.++...|++++|++.+++|+++.+.... . ...+
T Consensus 14 ~~~~~g~~~~A~~~~~~al--~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~----~----~~~~ 83 (338)
T 3ro2_A 14 RLCKSGDCRAGVSFFEAAV--QVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGD----Q----LGEA 83 (338)
T ss_dssp HHHHTTCHHHHHHHHHHHH--HHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC----H----HHHH
T ss_pred HHHHhccHHHHHHHHHHHH--hhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccc----c----HHHH
Confidence 4445566688999999998 788998 578999999999999999999999999998543220 0 0123
Q ss_pred hhhhhhHHHHHHcCCcHHHHHHHHHHHHcCCCCH------HHHHHHHHHHHHcCC--------------------HHHHH
Q 026773 173 GIILKKLIRVSHFNRFEEGAEQFRIDVAQNPNDT------EESIWCFLCEAQLYG--------------------VDEAR 226 (233)
Q Consensus 173 ~a~~~rG~al~~lGryeeAi~~f~kAL~lnP~d~------e~~~~~~l~~a~Lg~--------------------~dEA~ 226 (233)
.++..+|.++...|++++|++.+++++++.|... ..+...+.++..+|+ +++|.
T Consensus 84 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~ 163 (338)
T 3ro2_A 84 KASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAV 163 (338)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHH
Confidence 4566799999999999999999999999876432 245566777888899 88888
Q ss_pred HHHHhh
Q 026773 227 NRFLEA 232 (233)
Q Consensus 227 ~~~l~~ 232 (233)
..+.++
T Consensus 164 ~~~~~a 169 (338)
T 3ro2_A 164 DLYEEN 169 (338)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 877653
No 174
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.03 E-value=1.9e-09 Score=99.11 Aligned_cols=121 Identities=5% Similarity=0.000 Sum_probs=79.6
Q ss_pred chHHHHHHHHhccc-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhh--------------
Q 026773 105 PSVSGIWDALTGGN-NNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTI-------------- 169 (233)
Q Consensus 105 ~~a~~i~~~~i~~~-l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~-------------- 169 (233)
..|..++..++ + ++|+++.+|..+|.++...|++++|++.|++|++++|+++ ...|..
T Consensus 303 ~~A~~~~~~Al--~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~-----~~~~~~~~~~~~~~~~~~~A 375 (530)
T 2ooe_A 303 DEAANIYERAI--STLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDP-----TLVYIQYMKFARRAEGIKSG 375 (530)
T ss_dssp HHHHHHHHHHT--TTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCH-----HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH--HHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCc-----hHHHHHHHHHHHHhcCHHHH
Confidence 34666676666 5 5677777777777777777777777777777777777654 222220
Q ss_pred ------h------hhhhhhhhHHH-HHHcCCcHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhh
Q 026773 170 ------S------IVGIILKKLIR-VSHFNRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLEA 232 (233)
Q Consensus 170 ------~------~~~a~~~rG~a-l~~lGryeeAi~~f~kAL~lnP~d~e~~~~~~l~~a~Lg~~dEA~~~~l~~ 232 (233)
+ -...+...+.+ +...|++++|.+.|+++++.+|++++.+...+..+.++|+.++|+..|.++
T Consensus 376 ~~~~~~Al~~~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~a 451 (530)
T 2ooe_A 376 RMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERV 451 (530)
T ss_dssp HHHHHHHHTCTTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHH
T ss_pred HHHHHHHHhccCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHH
Confidence 0 01122233333 235788888888888888888888876655555666788888888887764
No 175
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.02 E-value=6.4e-10 Score=96.38 Aligned_cols=103 Identities=16% Similarity=0.023 Sum_probs=89.0
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHHHcCCcHHHHHHHHHHH
Q 026773 120 NSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSHFNRFEEGAEQFRIDV 199 (233)
Q Consensus 120 ~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~lGryeeAi~~f~kAL 199 (233)
+|..+..+..+|..+...|++++|++.|++|++++|+++ ... ..++..+|.++..+|++++|++.|++++
T Consensus 44 ~~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~-----~~~-----~~~~~~lg~~~~~~g~~~~A~~~~~~al 113 (411)
T 4a1s_A 44 GSSMCLELALEGERLCNAGDCRAGVAFFQAAIQAGTEDL-----RTL-----SAIYSQLGNAYFYLGDYNKAMQYHKHDL 113 (411)
T ss_dssp CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCH-----HHH-----HHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcccCh-----hHH-----HHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 356678889999999999999999999999999999876 211 2356679999999999999999999999
Q ss_pred Hc------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHhh
Q 026773 200 AQ------NPNDTEESIWCFLCEAQLYGVDEARNRFLEA 232 (233)
Q Consensus 200 ~l------nP~d~e~~~~~~l~~a~Lg~~dEA~~~~l~~ 232 (233)
++ +|.....+..++.++..+|++++|...+.++
T Consensus 114 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 152 (411)
T 4a1s_A 114 TLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERH 152 (411)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHccCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 98 6767777788888999999999999998764
No 176
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.02 E-value=1.6e-09 Score=92.44 Aligned_cols=102 Identities=15% Similarity=0.062 Sum_probs=79.6
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHHHcCCcHHHHHHHHHHHH
Q 026773 121 SREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSHFNRFEEGAEQFRIDVA 200 (233)
Q Consensus 121 P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~lGryeeAi~~f~kAL~ 200 (233)
+..+.++..+|.++...|++++|+..|+++++++|+++ .. ...++..+|.++...|++++|++.|+++++
T Consensus 6 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~-----~~-----~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 75 (406)
T 3sf4_A 6 EASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDL-----KT-----LSAIYSQLGNAYFYLHDYAKALEYHHHDLT 75 (406)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCH-----HH-----HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccH-----HH-----HHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 45677888999999999999999999999999988775 21 123456789999999999999999998888
Q ss_pred c------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHhh
Q 026773 201 Q------NPNDTEESIWCFLCEAQLYGVDEARNRFLEA 232 (233)
Q Consensus 201 l------nP~d~e~~~~~~l~~a~Lg~~dEA~~~~l~~ 232 (233)
+ +|..+..+...+.++..+|++++|...+.++
T Consensus 76 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 113 (406)
T 3sf4_A 76 LARTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRH 113 (406)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHhccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 7 3444555666777788889999998887654
No 177
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=99.01 E-value=2.3e-10 Score=81.50 Aligned_cols=87 Identities=13% Similarity=0.093 Sum_probs=74.2
Q ss_pred hHHHhccCcchHHHHHHHHhcccCCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhh
Q 026773 96 PTFTRRLFIPSVSGIWDALTGGNNNSREAV-VAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGI 174 (233)
Q Consensus 96 ~~~~r~~~~~~a~~i~~~~i~~~l~P~~a~-Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a 174 (233)
..+.+.+-...|...+..++ +++|+++. +|+.+|.++..+|++++|++.|+++++++|+++ .. +.
T Consensus 8 ~~~~~~~~~~~A~~~~~~al--~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~-----~~-~~------ 73 (99)
T 2kc7_A 8 KELINQGDIENALQALEEFL--QTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSP-----AL-QA------ 73 (99)
T ss_dssp HHHHHHTCHHHHHHHHHHHH--HHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTST-----HH-HH------
T ss_pred HHHHHcCCHHHHHHHHHHHH--HHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcH-----HH-HH------
Confidence 34445556678999999999 89999999 999999999999999999999999999999988 22 22
Q ss_pred hhhhHHHHHHcCCcHHHHHHHHHHHHcCCCCH
Q 026773 175 ILKKLIRVSHFNRFEEGAEQFRIDVAQNPNDT 206 (233)
Q Consensus 175 ~~~rG~al~~lGryeeAi~~f~kAL~lnP~d~ 206 (233)
.+.+++|++.|++++..+|+++
T Consensus 74 ----------~~~~~~a~~~~~~~~~~~p~~~ 95 (99)
T 2kc7_A 74 ----------RKMVMDILNFYNKDMYNQLEHH 95 (99)
T ss_dssp ----------HHHHHHHHHHHCCTTHHHHCCS
T ss_pred ----------HHHHHHHHHHHHHHhccCcccc
Confidence 1778899999999999998765
No 178
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.99 E-value=1.2e-09 Score=97.93 Aligned_cols=122 Identities=7% Similarity=-0.072 Sum_probs=99.6
Q ss_pred hHHHhccCcchHHHHHHHHhcccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhh
Q 026773 96 PTFTRRLFIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGII 175 (233)
Q Consensus 96 ~~~~r~~~~~~a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~ 175 (233)
..+...+-..+|...++.++ ..+|.+. +.+.+|.+++..|++++|++.|+++++..++.. - .+++
T Consensus 110 ~~L~~~g~y~eA~~~l~~~~--~~~p~~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~--------~----~~a~ 174 (282)
T 4f3v_A 110 ACEAAQGNYADAMEALEAAP--VAGSEHL-VAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFL--------A----GAAG 174 (282)
T ss_dssp HHHHHHTCHHHHHHHHTSSC--CTTCHHH-HHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHH--------H----HHHH
T ss_pred HHHHHCCCHHHHHHHHHHHH--hcCCchH-HHHHHHHHHHHcCCHHHHHHHHHHhhccCCccc--------H----HHHH
Confidence 44555555677888887777 6789888 999999999999999999999998887642110 0 1244
Q ss_pred hhhHHHHHHcCCcHHHHHHHHHHHHcC--CC-CHHHHHHHHHHHHHcCCHHHHHHHHHhh
Q 026773 176 LKKLIRVSHFNRFEEGAEQFRIDVAQN--PN-DTEESIWCFLCEAQLYGVDEARNRFLEA 232 (233)
Q Consensus 176 ~~rG~al~~lGryeeAi~~f~kAL~ln--P~-d~e~~~~~~l~~a~Lg~~dEA~~~~l~~ 232 (233)
+++|.++..+|++++|++.|++++.-+ |. .++..+++++|+.++|+.+||+..|.++
T Consensus 175 ~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a 234 (282)
T 4f3v_A 175 VAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWL 234 (282)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 569999999999999999999999655 55 6678899999999999999999999875
No 179
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=98.99 E-value=2.4e-09 Score=87.64 Aligned_cols=100 Identities=15% Similarity=0.065 Sum_probs=84.4
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHHHcCCcHHHHHHHHHHHHc-
Q 026773 123 EAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSHFNRFEEGAEQFRIDVAQ- 201 (233)
Q Consensus 123 ~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~lGryeeAi~~f~kAL~l- 201 (233)
+...+..+|..++..|++++|+..|+++++++|+++ .. ...++..+|.++...|++++|++.+++++++
T Consensus 4 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~-----~~-----~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 73 (338)
T 3ro2_A 4 SCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDL-----KT-----LSAIYSQLGNAYFYLHDYAKALEYHHHDLTLA 73 (338)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCH-----HH-----HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCcccH-----HH-----HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 356788999999999999999999999999999876 21 1235667999999999999999999999988
Q ss_pred -----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHhh
Q 026773 202 -----NPNDTEESIWCFLCEAQLYGVDEARNRFLEA 232 (233)
Q Consensus 202 -----nP~d~e~~~~~~l~~a~Lg~~dEA~~~~l~~ 232 (233)
.|..+..+...+.++..+|++++|...+.++
T Consensus 74 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 109 (338)
T 3ro2_A 74 RTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRH 109 (338)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hcccccHHHHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 4445556667778888999999999988764
No 180
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=98.97 E-value=1.5e-09 Score=95.12 Aligned_cols=128 Identities=8% Similarity=0.039 Sum_probs=100.7
Q ss_pred HHhccCcchHHHHHHHHhccc----CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhh
Q 026773 98 FTRRLFIPSVSGIWDALTGGN----NNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVG 173 (233)
Q Consensus 98 ~~r~~~~~~a~~i~~~~i~~~----l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~ 173 (233)
+.+.+-...|...+.+++... -.|..+.++.++|.++..+|++++|+..+++|+++.++.. .+. ...+.
T Consensus 111 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~-----~~~--~~~~~ 183 (378)
T 3q15_A 111 EFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHP-----LYS--IRTIQ 183 (378)
T ss_dssp HHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTST-----TCH--HHHHH
T ss_pred HHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCC-----Cch--hhHHH
Confidence 344455677888888887321 1234678999999999999999999999999999988765 211 13456
Q ss_pred hhhhhHHHHHHcCCcHHHHHHHHHHHHcCCC--C----HHHHHHHHHHHHHcCCHHHHHHHHHhh
Q 026773 174 IILKKLIRVSHFNRFEEGAEQFRIDVAQNPN--D----TEESIWCFLCEAQLYGVDEARNRFLEA 232 (233)
Q Consensus 174 a~~~rG~al~~lGryeeAi~~f~kAL~lnP~--d----~e~~~~~~l~~a~Lg~~dEA~~~~l~~ 232 (233)
+++++|.++..+|++++|++.|++++++.+. + ...+.+++.++..+|++++|...+.++
T Consensus 184 ~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~a 248 (378)
T 3q15_A 184 SLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKA 248 (378)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 7889999999999999999999999997431 2 234556788888999999999998875
No 181
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=98.88 E-value=5.3e-09 Score=76.39 Aligned_cols=57 Identities=11% Similarity=0.019 Sum_probs=53.8
Q ss_pred hhhHHHHHHcCCcHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhh
Q 026773 176 LKKLIRVSHFNRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLEA 232 (233)
Q Consensus 176 ~~rG~al~~lGryeeAi~~f~kAL~lnP~d~e~~~~~~l~~a~Lg~~dEA~~~~l~~ 232 (233)
+++|.+++.+|++++|++.|+++++++|+++..+.+++.|+..+|++++|+..+.++
T Consensus 11 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~a 67 (100)
T 3ma5_A 11 YALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQG 67 (100)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 359999999999999999999999999999999999999999999999999998764
No 182
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.84 E-value=1.7e-08 Score=82.96 Aligned_cols=109 Identities=10% Similarity=0.016 Sum_probs=91.3
Q ss_pred chHHHHHHHHhcccCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhCCC--CCCCccchhhhhhhhhhhhhhh
Q 026773 105 PSVSGIWDALTGGNNNSREAVVAIRRGMLLFR----QGDVVGSVAEFDKAIELDPR--QKISGKGAYRFTISIVGIILKK 178 (233)
Q Consensus 105 ~~a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~----lGdyeeAIadfdkAIeLdP~--~~~~~~~~y~~~~~~~~a~~~r 178 (233)
..|...|.++. ++.++.+++++|.++.. .+|+++|+..|++|++++|. ++ . +++++
T Consensus 70 ~~A~~~~~~A~----~~g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~-----~---------a~~~L 131 (212)
T 3rjv_A 70 PQARQLAEKAV----EAGSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAV-----D---------AQMLL 131 (212)
T ss_dssp HHHHHHHHHHH----HTTCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHH-----H---------HHHHH
T ss_pred HHHHHHHHHHH----HCCCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchH-----H---------HHHHH
Confidence 55777777775 57899999999999998 89999999999999999984 23 2 23459
Q ss_pred HHHHHH----cCCcHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHc-C-----CHHHHHHHHHhh
Q 026773 179 LIRVSH----FNRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQL-Y-----GVDEARNRFLEA 232 (233)
Q Consensus 179 G~al~~----lGryeeAi~~f~kAL~lnP~d~e~~~~~~l~~a~L-g-----~~dEA~~~~l~~ 232 (233)
|.++.. .+++++|++.|++++++ |+++++..+++.++... | +.++|...|.++
T Consensus 132 g~~y~~g~g~~~d~~~A~~~~~~A~~~-~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A 194 (212)
T 3rjv_A 132 GLIYASGVHGPEDDVKASEYFKGSSSL-SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVS 194 (212)
T ss_dssp HHHHHHTSSSSCCHHHHHHHHHHHHHT-SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHH
T ss_pred HHHHHcCCCCCCCHHHHHHHHHHHHHc-CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHH
Confidence 999999 89999999999999999 77788888888887753 3 799999988764
No 183
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=98.83 E-value=1.8e-08 Score=86.98 Aligned_cols=121 Identities=8% Similarity=-0.045 Sum_probs=93.8
Q ss_pred cCcchHHHHHHHHhcccCCCCC-H----HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhh
Q 026773 102 LFIPSVSGIWDALTGGNNNSRE-A----VVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIIL 176 (233)
Q Consensus 102 ~~~~~a~~i~~~~i~~~l~P~~-a----~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~ 176 (233)
+-.+.+...+.+++ +..|.+ + .++..+|.++...|++++|++.+++|+++.|+... ... ...++.
T Consensus 28 g~~~~A~~~~~~al--~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~-----~~~---~~~~~~ 97 (373)
T 1hz4_A 28 GNPDEAERLAKLAL--EELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDV-----WHY---ALWSLI 97 (373)
T ss_dssp TCHHHHHHHHHHHH--HTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTC-----HHH---HHHHHH
T ss_pred CCHHHHHHHHHHHH--HcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCc-----HHH---HHHHHH
Confidence 34566777888877 545543 3 37889999999999999999999999999987651 211 233456
Q ss_pred hhHHHHHHcCCcHHHHHHHHHHHHcCC--------CCHHHHHHHHHHHHHcCCHHHHHHHHHhh
Q 026773 177 KKLIRVSHFNRFEEGAEQFRIDVAQNP--------NDTEESIWCFLCEAQLYGVDEARNRFLEA 232 (233)
Q Consensus 177 ~rG~al~~lGryeeAi~~f~kAL~lnP--------~d~e~~~~~~l~~a~Lg~~dEA~~~~l~~ 232 (233)
++|.++...|++++|++.+++++++.+ .....+.+++.++..+|++++|...+.++
T Consensus 98 ~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 161 (373)
T 1hz4_A 98 QQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSG 161 (373)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 799999999999999999999999863 22334455677788999999999988764
No 184
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.80 E-value=2.1e-08 Score=82.30 Aligned_cols=108 Identities=10% Similarity=-0.041 Sum_probs=68.3
Q ss_pred cchHHHHHHHHhcccCCCCCHHHHHHHHHHHHHcC----CHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhH
Q 026773 104 IPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQG----DVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKL 179 (233)
Q Consensus 104 ~~~a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~lG----dyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG 179 (233)
...|...|.+++ +++++.+++++|.++.. | |+++|+..|++|++ ++++ . +++++|
T Consensus 34 ~~~A~~~~~~a~----~~g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~--~g~~-----~---------a~~~Lg 92 (212)
T 3rjv_A 34 YQKAEYWAQKAA----AQGDGDALALLAQLKIR-NPQQADYPQARQLAEKAVE--AGSK-----S---------GEIVLA 92 (212)
T ss_dssp HHHHHHHHHHHH----HTTCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHH--TTCH-----H---------HHHHHH
T ss_pred HHHHHHHHHHHH----HcCCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHH--CCCH-----H---------HHHHHH
Confidence 344445555444 23556666666666655 4 66666666666643 2333 2 233577
Q ss_pred HHHHH----cCCcHHHHHHHHHHHHcCC--CCHHHHHHHHHHHHH----cCCHHHHHHHHHhh
Q 026773 180 IRVSH----FNRFEEGAEQFRIDVAQNP--NDTEESIWCFLCEAQ----LYGVDEARNRFLEA 232 (233)
Q Consensus 180 ~al~~----lGryeeAi~~f~kAL~lnP--~d~e~~~~~~l~~a~----Lg~~dEA~~~~l~~ 232 (233)
.++.. .+++++|++.|+++++.+| ++++++..++.++.. .+++++|...|.++
T Consensus 93 ~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A 155 (212)
T 3rjv_A 93 RVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGS 155 (212)
T ss_dssp HHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHH
T ss_pred HHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHH
Confidence 77776 7788888888888887777 347777777777777 67778887777654
No 185
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=98.78 E-value=2.7e-08 Score=68.49 Aligned_cols=74 Identities=15% Similarity=0.161 Sum_probs=62.6
Q ss_pred HHHhccCcchHHHHHHHHhcccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhh
Q 026773 97 TFTRRLFIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIIL 176 (233)
Q Consensus 97 ~~~r~~~~~~a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~ 176 (233)
.+.+.+-..+|...+..++ +++|+++.++..+|.++...|++++|+..|+++++++|+++ ..+.
T Consensus 18 ~~~~~~~~~~A~~~~~~a~--~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~-----~~~~--------- 81 (91)
T 1na3_A 18 AYYKQGDYDEAIEYYQKAL--ELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNA-----EAKQ--------- 81 (91)
T ss_dssp HHHHTTCHHHHHHHHHHHH--HHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH-----HHHH---------
T ss_pred HHHHccCHHHHHHHHHHHH--hcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCH-----HHHH---------
Confidence 3444555678889999998 88999999999999999999999999999999999999987 3333
Q ss_pred hhHHHHHHcC
Q 026773 177 KKLIRVSHFN 186 (233)
Q Consensus 177 ~rG~al~~lG 186 (233)
++|.++..+|
T Consensus 82 ~l~~~~~~~g 91 (91)
T 1na3_A 82 NLGNAKQKQG 91 (91)
T ss_dssp HHHHHHHHHC
T ss_pred HHHHHHHhcC
Confidence 4888887654
No 186
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.74 E-value=3.5e-09 Score=95.00 Aligned_cols=122 Identities=15% Similarity=0.096 Sum_probs=92.4
Q ss_pred CcchHHHHHHHHhcccCCCCCHHHHHHH-------HHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhh-h-----
Q 026773 103 FIPSVSGIWDALTGGNNNSREAVVAIRR-------GMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFT-I----- 169 (233)
Q Consensus 103 ~~~~a~~i~~~~i~~~l~P~~a~Ay~~R-------G~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~-~----- 169 (233)
-...|...|.+++ +++|..+++|..| |.++..++++.+++..+.+++++.|+... ..+. .
T Consensus 21 d~~~A~~~F~~a~--~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~-----a~~~~~g~y~~ 93 (282)
T 4f3v_A 21 SEARSLDLFTEIT--NYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLN-----ARIAIGGLYGD 93 (282)
T ss_dssp CHHHHHHHHHHHH--HHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGC-----CEEECCTTTCC
T ss_pred CHHHHHHHHHHHH--HhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhh-----hhhccCCcccc
Confidence 3467888999999 9999999999999 99999999999999999999999998762 2111 0
Q ss_pred ----------------------------------------hhhhhhhhhHHHHHHcCCcHHHHHHHHHHHHcCCCC--HH
Q 026773 170 ----------------------------------------SIVGIILKKLIRVSHFNRFEEGAEQFRIDVAQNPND--TE 207 (233)
Q Consensus 170 ----------------------------------------~~~~a~~~rG~al~~lGryeeAi~~f~kAL~lnP~d--~e 207 (233)
.-+ +.+.+|.+++..||+++|++.|+++++..++. .+
T Consensus 94 ~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~ 172 (282)
T 4f3v_A 94 ITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAGSEHL-VAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGA 172 (282)
T ss_dssp CEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHH-HHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHH
T ss_pred cccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchH-HHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHH
Confidence 003 55566666666666666666666665543221 24
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHhh
Q 026773 208 ESIWCFLCEAQLYGVDEARNRFLEA 232 (233)
Q Consensus 208 ~~~~~~l~~a~Lg~~dEA~~~~l~~ 232 (233)
.+++++.++..+|+++||...|.++
T Consensus 173 a~~~LG~al~~LG~~~eAl~~l~~a 197 (282)
T 4f3v_A 173 AGVAHGVAAANLALFTEAERRLTEA 197 (282)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 6788888888999999999888765
No 187
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=98.73 E-value=8.6e-08 Score=71.43 Aligned_cols=84 Identities=12% Similarity=0.059 Sum_probs=68.1
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHHHcCCcHHHHHHHHHHHHcC
Q 026773 123 EAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSHFNRFEEGAEQFRIDVAQN 202 (233)
Q Consensus 123 ~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~lGryeeAi~~f~kAL~ln 202 (233)
++.-.+.+|..++..|+|+.|+..|++|++..+.... . .....+++.++|.+++.+|++++|+..++++++++
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~----~---~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~ 76 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEI----S---TIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELD 76 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCC----C---SSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCC----C---cccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC
Confidence 5677889999999999999999999999998643320 0 00123566789999999999999999999999999
Q ss_pred CCCHHHHHHHH
Q 026773 203 PNDTEESIWCF 213 (233)
Q Consensus 203 P~d~e~~~~~~ 213 (233)
|+++....+..
T Consensus 77 P~~~~~~~n~~ 87 (104)
T 2v5f_A 77 PEHQRANGNLK 87 (104)
T ss_dssp TTCHHHHHHHH
T ss_pred CCCHHHHhhHH
Confidence 99988755544
No 188
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=98.72 E-value=4.2e-08 Score=84.73 Aligned_cols=125 Identities=13% Similarity=0.065 Sum_probs=91.8
Q ss_pred hccCcchHHHHHHHHhcccCCC--CC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhh
Q 026773 100 RRLFIPSVSGIWDALTGGNNNS--RE----AVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVG 173 (233)
Q Consensus 100 r~~~~~~a~~i~~~~i~~~l~P--~~----a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~ 173 (233)
..+-...+...+.+++ ++.| .+ +.++.++|.++..+|++++|++.+++++++.+.... ... .....
T Consensus 65 ~~g~~~~A~~~~~~al--~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~----~~~--~~~~~ 136 (373)
T 1hz4_A 65 CKGELTRSLALMQQTE--QMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHL----EQL--PMHEF 136 (373)
T ss_dssp HHTCHHHHHHHHHHHH--HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC----TTS--THHHH
T ss_pred hcCcHHHHHHHHHHHH--HHHHhcCcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcc----ccC--cHHHH
Confidence 3444566777777776 3222 22 355789999999999999999999999999764331 000 01123
Q ss_pred hhhhhHHHHHHcCCcHHHHHHHHHHHHcCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHhh
Q 026773 174 IILKKLIRVSHFNRFEEGAEQFRIDVAQNPND-----TEESIWCFLCEAQLYGVDEARNRFLEA 232 (233)
Q Consensus 174 a~~~rG~al~~lGryeeAi~~f~kAL~lnP~d-----~e~~~~~~l~~a~Lg~~dEA~~~~l~~ 232 (233)
++.++|.+++..|++++|.+.+++++++.|.. ...+...+.+....|++++|...+.++
T Consensus 137 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a 200 (373)
T 1hz4_A 137 LVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRL 200 (373)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 45679999999999999999999999998853 234455667778899999999988764
No 189
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.70 E-value=3.3e-08 Score=94.04 Aligned_cols=127 Identities=9% Similarity=-0.022 Sum_probs=98.1
Q ss_pred hHHHhccCcchHHHHHHHHhc------ccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-----CCCCCCCccch
Q 026773 96 PTFTRRLFIPSVSGIWDALTG------GNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIEL-----DPRQKISGKGA 164 (233)
Q Consensus 96 ~~~~r~~~~~~a~~i~~~~i~------~~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeL-----dP~~~~~~~~~ 164 (233)
..+...+-..+|+.++.+++. +..+|.-+.++.++|.++..+|+|++|+..+++|+++ .|+++
T Consensus 317 ~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp------ 390 (490)
T 3n71_A 317 DKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNA------ 390 (490)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCH------
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCH------
Confidence 344455566778888887763 1234445578999999999999999999999999987 46555
Q ss_pred hhhhhhhhhhhhhhHHHHHHcCCcHHHHHHHHHHHHc-----CCCCHHHH---HHHHHHHHHcCCHHHHHHHHHhhC
Q 026773 165 YRFTISIVGIILKKLIRVSHFNRFEEGAEQFRIDVAQ-----NPNDTEES---IWCFLCEAQLYGVDEARNRFLEAR 233 (233)
Q Consensus 165 y~~~~~~~~a~~~rG~al~~lGryeeAi~~f~kAL~l-----nP~d~e~~---~~~~l~~a~Lg~~dEA~~~~l~~~ 233 (233)
.++..++|+|.+|..+|+|++|+..|++|+++ .|++|... ..+..|...++.+++|...+.++|
T Consensus 391 -----~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~ 462 (490)
T 3n71_A 391 -----QLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMR 462 (490)
T ss_dssp -----HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -----HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 23446789999999999999999999999985 68887653 345566777888899888776654
No 190
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=98.68 E-value=7.6e-08 Score=79.61 Aligned_cols=97 Identities=11% Similarity=0.148 Sum_probs=80.9
Q ss_pred chHHHHHHHHhcccCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHhhC-CC-CCCCccchhhhhhhhhhhhhhhH
Q 026773 105 PSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQG---DVVGSVAEFDKAIELD-PR-QKISGKGAYRFTISIVGIILKKL 179 (233)
Q Consensus 105 ~~a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~lG---dyeeAIadfdkAIeLd-P~-~~~~~~~~y~~~~~~~~a~~~rG 179 (233)
..++.-|.... +.+|.+.++.++.|+++...+ +.++||..++..++.+ |. .. .+.| ++|
T Consensus 15 ~~~~~~y~~e~--~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~r-----d~lY---------~LA 78 (152)
T 1pc2_A 15 LKFEKKFQSEK--AAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQR-----DYVF---------YLA 78 (152)
T ss_dssp HHHHHHHHHHH--HTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHH-----HHHH---------HHH
T ss_pred HHHHHHHHHHH--ccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchH-----HHHH---------HHH
Confidence 34566677666 678999999999999999998 7779999999999999 73 23 3444 499
Q ss_pred HHHHHcCCcHHHHHHHHHHHHcCCCCHHHHHHHHHHHH
Q 026773 180 IRVSHFNRFEEGAEQFRIDVAQNPNDTEESIWCFLCEA 217 (233)
Q Consensus 180 ~al~~lGryeeAi~~f~kAL~lnP~d~e~~~~~~l~~a 217 (233)
+.++++|+|++|.+.++++++++|++.++......+..
T Consensus 79 v~~~kl~~Y~~A~~y~~~lL~ieP~n~QA~~Lk~~ie~ 116 (152)
T 1pc2_A 79 VGNYRLKEYEKALKYVRGLLQTEPQNNQAKELERLIDK 116 (152)
T ss_dssp HHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999988666555543
No 191
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=98.58 E-value=1.9e-07 Score=84.96 Aligned_cols=103 Identities=13% Similarity=-0.035 Sum_probs=84.6
Q ss_pred cCCCCCHHHHHHHHHHHHH---c--CC------HHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHHHc-
Q 026773 118 NNNSREAVVAIRRGMLLFR---Q--GD------VVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSHF- 185 (233)
Q Consensus 118 ~l~P~~a~Ay~~RG~a~~~---l--Gd------yeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~l- 185 (233)
+.+|+++++++..|.+..- . |+ ..+|.+..+|||++||+... ... +.-+|..|+..
T Consensus 146 ~~~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleLDP~~~~---GsA---------~~~LG~lY~~vP 213 (301)
T 3u64_A 146 RCTRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDLWPSYQE---GAV---------WNVLTKFYAAAP 213 (301)
T ss_dssp TCCGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHHCTTHHH---HHH---------HHHHHHHHHHSC
T ss_pred HcCccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHhCCCccc---CHH---------HHHHHHHHHhCC
Confidence 5789999999999998854 2 33 57899999999999998430 023 23489999995
Q ss_pred ----CCcHHHHHHHHHHHHcCCCC-HHHHHHHHHHHHH-cCCHHHHHHHHHhh
Q 026773 186 ----NRFEEGAEQFRIDVAQNPND-TEESIWCFLCEAQ-LYGVDEARNRFLEA 232 (233)
Q Consensus 186 ----GryeeAi~~f~kAL~lnP~d-~e~~~~~~l~~a~-Lg~~dEA~~~~l~~ 232 (233)
|+.++|.+.|++|++++|+. .+..+..+--++. .|+.++|+..+.+|
T Consensus 214 p~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kA 266 (301)
T 3u64_A 214 ESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRA 266 (301)
T ss_dssp TTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHH
T ss_pred CccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 99999999999999999975 9888888777776 59999999998875
No 192
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=98.54 E-value=1e-07 Score=88.84 Aligned_cols=126 Identities=10% Similarity=0.040 Sum_probs=87.5
Q ss_pred CCcchhhccccccccccccccccchhHHHhccCc-chHH---HHHHHHhcccCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 026773 71 APLSVQTHINSLFSTPRGHYLQNRAPTFTRRLFI-PSVS---GIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAE 146 (233)
Q Consensus 71 ~~~~~~~~~n~~~~~~~~h~~~~~~~~~~r~~~~-~~a~---~i~~~~i~~~l~P~~a~Ay~~RG~a~~~lGdyeeAIad 146 (233)
.-+.+++..+|.|+.......--.+......... .... .....+....++|+++.+|..+|.++...|++++|++.
T Consensus 220 ~l~e~Al~lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~ 299 (372)
T 3ly7_A 220 ELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPELNNLSIIYQIKAVSALVKGKTDESYQA 299 (372)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhcccCCcCHHHHHHHHHHHHhCCCHHHHHHH
Confidence 3366777888888766554222111001111000 0111 11222233468899999999999999999999999999
Q ss_pred HHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHHHcCCcHHHHHHHHHHHHcCCCCHHHHHHH
Q 026773 147 FDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSHFNRFEEGAEQFRIDVAQNPNDTEESIWC 212 (233)
Q Consensus 147 fdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~lGryeeAi~~f~kAL~lnP~d~e~~~~~ 212 (233)
+++|+++||+.. .+ .-+|.++...|++++|++.|++|++++|.++ .+.|+
T Consensus 300 l~rAl~Ln~s~~------a~---------~llG~~~~~~G~~~eA~e~~~~AlrL~P~~~-t~~~~ 349 (372)
T 3ly7_A 300 INTGIDLEMSWL------NY---------VLLGKVYEMKGMNREAADAYLTAFNLRPGAN-TLYWI 349 (372)
T ss_dssp HHHHHHHCCCHH------HH---------HHHHHHHHHTTCHHHHHHHHHHHHHHSCSHH-HHHHH
T ss_pred HHHHHhcCCCHH------HH---------HHHHHHHHHCCCHHHHHHHHHHHHhcCCCcC-hHHHH
Confidence 999999997422 22 2489999999999999999999999999876 45555
No 193
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=98.49 E-value=1.9e-07 Score=84.92 Aligned_cols=88 Identities=9% Similarity=0.015 Sum_probs=74.4
Q ss_pred chHHHHHHHHhcccCCCC--CHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHhhCCCC-CCCccchhhhhhhhhhhhh
Q 026773 105 PSVSGIWDALTGGNNNSR--EAVVAIRRGMLLFRQ-----GDVVGSVAEFDKAIELDPRQ-KISGKGAYRFTISIVGIIL 176 (233)
Q Consensus 105 ~~a~~i~~~~i~~~l~P~--~a~Ay~~RG~a~~~l-----GdyeeAIadfdkAIeLdP~~-~~~~~~~y~~~~~~~~a~~ 176 (233)
+.+.....+++ ++||+ +..+|..+|..|... |+.++|.+.|+|||+|+|+. . ....
T Consensus 180 ~~A~a~lerAl--eLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~i-----d~~v--------- 243 (301)
T 3u64_A 180 HAAVMMLERAC--DLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDP-----DHHI--------- 243 (301)
T ss_dssp HHHHHHHHHHH--HHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCS-----HHHH---------
T ss_pred HHHHHHHHHHH--HhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCc-----hHHH---------
Confidence 56777777788 99999 778999999999995 99999999999999999975 5 2222
Q ss_pred hhHHHHHH-cCCcHHHHHHHHHHHHcCCCC-HHH
Q 026773 177 KKLIRVSH-FNRFEEGAEQFRIDVAQNPND-TEE 208 (233)
Q Consensus 177 ~rG~al~~-lGryeeAi~~f~kAL~lnP~d-~e~ 208 (233)
..|..+.. .|++++|.+.++++++.+|.. |+.
T Consensus 244 ~YA~~l~~~~gd~~~a~~~L~kAL~a~p~~~P~~ 277 (301)
T 3u64_A 244 TYADALCIPLNNRAGFDEALDRALAIDPESVPHN 277 (301)
T ss_dssp HHHHHTTTTTTCHHHHHHHHHHHHHCCGGGCSSC
T ss_pred HHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCCCh
Confidence 36888877 599999999999999999984 543
No 194
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=98.48 E-value=1.7e-06 Score=78.72 Aligned_cols=93 Identities=16% Similarity=0.022 Sum_probs=61.5
Q ss_pred CCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHHH----cCCcHHHHHH
Q 026773 122 REAVVAIRRGMLLFRQG---DVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSH----FNRFEEGAEQ 194 (233)
Q Consensus 122 ~~a~Ay~~RG~a~~~lG---dyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~----lGryeeAi~~ 194 (233)
.++++++++|.++...| ++++|++.|++|++.+ + .++++++|.++.. .+++++|+++
T Consensus 326 ~~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~--~--------------~~a~~~Lg~~y~~g~g~~~~~~~A~~~ 389 (490)
T 2xm6_A 326 GDATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKG--E--------------KAAQFNLGNALLQGKGVKKDEQQAAIW 389 (490)
T ss_dssp TCHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTT--C--------------HHHHHHHHHHHHHTSSSCCCHHHHHHH
T ss_pred CCHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCC--C--------------HHHHHHHHHHHHcCCCCCCCHHHHHHH
Confidence 34445555555554444 4555555555555442 1 2344568888888 7888888888
Q ss_pred HHHHHHcCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHhh
Q 026773 195 FRIDVAQNPNDTEESIWCFLCEAQ----LYGVDEARNRFLEA 232 (233)
Q Consensus 195 f~kAL~lnP~d~e~~~~~~l~~a~----Lg~~dEA~~~~l~~ 232 (233)
|+++++.+ +++.+.+++.++.. .+++++|...|.++
T Consensus 390 ~~~A~~~~--~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A 429 (490)
T 2xm6_A 390 MRKAAEQG--LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTA 429 (490)
T ss_dssp HHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHH
T ss_pred HHHHHhCC--CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHH
Confidence 88888864 57777777777777 78888888888764
No 195
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.48 E-value=2e-06 Score=66.72 Aligned_cols=104 Identities=13% Similarity=-0.019 Sum_probs=80.5
Q ss_pred chHHHHHHHHhcccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHHH
Q 026773 105 PSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSH 184 (233)
Q Consensus 105 ~~a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~ 184 (233)
+.|...|.++. +.. ++.+. +|.++...+.+++|+..|++|.+.+ ++ .. ++++|.++..
T Consensus 12 ~~A~~~~~~aa--~~g--~~~a~--lg~~y~~g~~~~~A~~~~~~Aa~~g--~~-----~a---------~~~Lg~~y~~ 69 (138)
T 1klx_A 12 KKAIQYYVKAC--ELN--EMFGC--LSLVSNSQINKQKLFQYLSKACELN--SG-----NG---------CRFLGDFYEN 69 (138)
T ss_dssp HHHHHHHHHHH--HTT--CTTHH--HHHHTCTTSCHHHHHHHHHHHHHTT--CH-----HH---------HHHHHHHHHH
T ss_pred HHHHHHHHHHH--cCC--CHhhh--HHHHHHcCCCHHHHHHHHHHHHcCC--CH-----HH---------HHHHHHHHHc
Confidence 45667777776 444 44444 8998888888999999999999873 33 22 2358998888
Q ss_pred ----cCCcHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHhh
Q 026773 185 ----FNRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQ----LYGVDEARNRFLEA 232 (233)
Q Consensus 185 ----lGryeeAi~~f~kAL~lnP~d~e~~~~~~l~~a~----Lg~~dEA~~~~l~~ 232 (233)
.+++++|++.|++|.+. .++++..+++.++.. .++.++|...|.++
T Consensus 70 G~g~~~d~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~A 123 (138)
T 1klx_A 70 GKYVKKDLRKAAQYYSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKA 123 (138)
T ss_dssp CSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHH
T ss_pred CCCCCccHHHHHHHHHHHHcC--CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHH
Confidence 88999999999999887 668888888888887 78899998888764
No 196
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=98.46 E-value=5.1e-07 Score=84.14 Aligned_cols=111 Identities=8% Similarity=-0.018 Sum_probs=83.4
Q ss_pred chHHHHHHHHhcccCCCCCHHHHHHHHHHHHHcCCH----HHHHHH----HH--HHHhhCCCCCCCccchhhhhhhhhhh
Q 026773 105 PSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDV----VGSVAE----FD--KAIELDPRQKISGKGAYRFTISIVGI 174 (233)
Q Consensus 105 ~~a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~lGdy----eeAIad----fd--kAIeLdP~~~~~~~~~y~~~~~~~~a 174 (233)
..|..++.+++ +++|+++.+|..+++++.....+ ...++. +. .+++++|..+ ..++.
T Consensus 216 ~~A~~l~e~Al--~lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a~~~~~~~a-----~~~~a------ 282 (372)
T 3ly7_A 216 NRASELLGEIV--QSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPELNNLS-----IIYQI------ 282 (372)
T ss_dssp HHHHHHHHHHH--HHCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTCH-----HHHHH------
T ss_pred HHHHHHHHHHH--HhCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhcccCCcCH-----HHHHH------
Confidence 56788888888 89999999999988888632111 111121 22 2336677776 34333
Q ss_pred hhhhHHHHHHcCCcHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhh
Q 026773 175 ILKKLIRVSHFNRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLEA 232 (233)
Q Consensus 175 ~~~rG~al~~lGryeeAi~~f~kAL~lnP~d~e~~~~~~l~~a~Lg~~dEA~~~~l~~ 232 (233)
.+.++...|++++|++.+++|+++||+ ...+..++.+....|+.++|.+.+.++
T Consensus 283 ---lal~~l~~gd~d~A~~~l~rAl~Ln~s-~~a~~llG~~~~~~G~~~eA~e~~~~A 336 (372)
T 3ly7_A 283 ---KAVSALVKGKTDESYQAINTGIDLEMS-WLNYVLLGKVYEMKGMNREAADAYLTA 336 (372)
T ss_dssp ---HHHHHHHHTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred ---HHHHHHhCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 788888899999999999999999985 566778889999999999999999764
No 197
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=98.42 E-value=4.4e-06 Score=75.93 Aligned_cols=106 Identities=9% Similarity=-0.047 Sum_probs=74.0
Q ss_pred chHHHHHHHHhcccCCCCCHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhH
Q 026773 105 PSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQ-----GDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKL 179 (233)
Q Consensus 105 ~~a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~l-----GdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG 179 (233)
..|...+..+. +..++++++.+|.++... +|+++|+..|++|++.++.. +++++|
T Consensus 276 ~~A~~~~~~a~----~~~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~~~~----------------a~~~lg 335 (490)
T 2xm6_A 276 LKALEWYRKSA----EQGNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQGDAT----------------AQANLG 335 (490)
T ss_dssp HHHHHHHHHHH----TTTCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTTCHH----------------HHHHHH
T ss_pred HHHHHHHHHHH----HcCCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcCCHH----------------HHHHHH
Confidence 34455555554 235677777777777776 77777777777777764421 223578
Q ss_pred HHHHHcC---CcHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHhh
Q 026773 180 IRVSHFN---RFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQ----LYGVDEARNRFLEA 232 (233)
Q Consensus 180 ~al~~lG---ryeeAi~~f~kAL~lnP~d~e~~~~~~l~~a~----Lg~~dEA~~~~l~~ 232 (233)
.++...| ++++|++.|+++++. ++++.+..++.++.. .+++++|...|.++
T Consensus 336 ~~y~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A 393 (490)
T 2xm6_A 336 AIYFRLGSEEEHKKAVEWFRKAAAK--GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKA 393 (490)
T ss_dssp HHHHHSCCHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHH
T ss_pred HHHHhCCCcccHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHH
Confidence 8888766 788888888888887 567777778777777 78888888887654
No 198
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=98.41 E-value=1.4e-06 Score=79.86 Aligned_cols=103 Identities=4% Similarity=-0.036 Sum_probs=65.1
Q ss_pred CCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHhhCCCCCCCccchhhhhh--------------------------hh
Q 026773 121 SREAVVAIRRGMLLFRQG---DVVGSVAEFDKAIELDPRQKISGKGAYRFTI--------------------------SI 171 (233)
Q Consensus 121 P~~a~Ay~~RG~a~~~lG---dyeeAIadfdkAIeLdP~~~~~~~~~y~~~~--------------------------~~ 171 (233)
..++.+++++|.++...| ++++|+..|++|.+.+|..+ ..++.. .-
T Consensus 173 ~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a-----~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~g~ 247 (452)
T 3e4b_A 173 NTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTA-----QRVDSVARVLGDATLGTPDEKTAQALLEKIAPGY 247 (452)
T ss_dssp TTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCH-----HHHHHHHHHHTCGGGSSCCHHHHHHHHHHHGGGS
T ss_pred cCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHH-----HHHHHHHHHHhCCCCCCCCHHHHHHHHHHHcCCC
Confidence 344459999999999999 99999999999999999876 321220 01
Q ss_pred hhhhhhhHHH-H--HHcCCcHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcC-----CHHHHHHHHHh
Q 026773 172 VGIILKKLIR-V--SHFNRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQLY-----GVDEARNRFLE 231 (233)
Q Consensus 172 ~~a~~~rG~a-l--~~lGryeeAi~~f~kAL~lnP~d~e~~~~~~l~~a~Lg-----~~dEA~~~~l~ 231 (233)
..+++++|.+ + ...+++++|++.|+++++. +++++..+++.++. .| ++++|...|.+
T Consensus 248 ~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~--g~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~ 312 (452)
T 3e4b_A 248 PASWVSLAQLLYDFPELGDVEQMMKYLDNGRAA--DQPRAELLLGKLYY-EGKWVPADAKAAEAHFEK 312 (452)
T ss_dssp THHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHH
Confidence 3344555555 2 3456666666666666543 24555555555544 33 56666665554
No 199
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=98.35 E-value=3.1e-06 Score=77.59 Aligned_cols=92 Identities=14% Similarity=-0.001 Sum_probs=70.0
Q ss_pred CCCHHHHHHHHHH-H--HHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHHHcC-----CcHHHH
Q 026773 121 SREAVVAIRRGML-L--FRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSHFN-----RFEEGA 192 (233)
Q Consensus 121 P~~a~Ay~~RG~a-~--~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~lG-----ryeeAi 192 (233)
|+++.+++++|.+ + ...||+++|+..|++|++.+ ++ .+++++|.++. .| ++++|+
T Consensus 245 ~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g--~~--------------~A~~~Lg~~y~-~G~g~~~d~~~A~ 307 (452)
T 3e4b_A 245 PGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD--QP--------------RAELLLGKLYY-EGKWVPADAKAAE 307 (452)
T ss_dssp GGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT--CH--------------HHHHHHHHHHH-HCSSSCCCHHHHH
T ss_pred CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC--CH--------------HHHHHHHHHHH-cCCCCCCCHHHHH
Confidence 6777777777776 3 35677777777777777554 33 23446999988 66 999999
Q ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHhh
Q 026773 193 EQFRIDVAQNPNDTEESIWCFLCEAQ----LYGVDEARNRFLEA 232 (233)
Q Consensus 193 ~~f~kAL~lnP~d~e~~~~~~l~~a~----Lg~~dEA~~~~l~~ 232 (233)
++|+++. |+++++..+++.++.. ..++++|...|.++
T Consensus 308 ~~~~~Aa---~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A 348 (452)
T 3e4b_A 308 AHFEKAV---GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTA 348 (452)
T ss_dssp HHHHTTT---TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHH
T ss_pred HHHHHHh---CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHH
Confidence 9999998 8999998888877765 33999999998764
No 200
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.30 E-value=3.8e-06 Score=73.32 Aligned_cols=130 Identities=8% Similarity=0.026 Sum_probs=98.4
Q ss_pred HHHhccCcchHHHHHHHHhcccCCCCCH-----------------HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCC
Q 026773 97 TFTRRLFIPSVSGIWDALTGGNNNSREA-----------------VVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKI 159 (233)
Q Consensus 97 ~~~r~~~~~~a~~i~~~~i~~~l~P~~a-----------------~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~ 159 (233)
.+.+.+-..+|...|..++ +.+|+.. .++.++|.++..+|++++|++.+.+++++.+....
T Consensus 13 ~l~~~~~y~eA~~~~~~~l--~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~ 90 (434)
T 4b4t_Q 13 RLVNEKQYNEAEQVYLSLL--DKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAK 90 (434)
T ss_dssp HHHHHTCHHHHHHHHHHHH--HSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCH
T ss_pred HHHHCCCHHHHHHHHHHHH--hhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccc
Confidence 3444555677889999988 6566543 46899999999999999999999999998776541
Q ss_pred Cccchhh----hh--------------------h------------hhhhhhhhhHHHHHHcCCcHHHHHHHHHHHHc--
Q 026773 160 SGKGAYR----FT--------------------I------------SIVGIILKKLIRVSHFNRFEEGAEQFRIDVAQ-- 201 (233)
Q Consensus 160 ~~~~~y~----~~--------------------~------------~~~~a~~~rG~al~~lGryeeAi~~f~kAL~l-- 201 (233)
... .. . ....++.++|.++...|+|++|++.+.+++..
T Consensus 91 ----~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~ 166 (434)
T 4b4t_Q 91 ----SKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFK 166 (434)
T ss_dssp ----HHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHT
T ss_pred ----hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHH
Confidence 110 00 0 11457788999999999999999999998876
Q ss_pred ----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHhh
Q 026773 202 ----NPNDTEESIWCFLCEAQLYGVDEARNRFLEA 232 (233)
Q Consensus 202 ----nP~d~e~~~~~~l~~a~Lg~~dEA~~~~l~~ 232 (233)
+|...+.+...+.+...+|++++|+..+.++
T Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a 201 (434)
T 4b4t_Q 167 KLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAA 201 (434)
T ss_dssp TSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHH
Confidence 3334556666777888999999999988764
No 201
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=98.21 E-value=2.7e-06 Score=79.72 Aligned_cols=94 Identities=10% Similarity=-0.023 Sum_probs=75.0
Q ss_pred cchHHHHHHHHhcc---cCCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-----CCCCCCCccchhhhhhhhh
Q 026773 104 IPSVSGIWDALTGG---NNNSRE---AVVAIRRGMLLFRQGDVVGSVAEFDKAIEL-----DPRQKISGKGAYRFTISIV 172 (233)
Q Consensus 104 ~~~a~~i~~~~i~~---~l~P~~---a~Ay~~RG~a~~~lGdyeeAIadfdkAIeL-----dP~~~~~~~~~y~~~~~~~ 172 (233)
..+|+.++.+++.. .+.|++ +.++.++|.++..+|+|++|+..+++|+++ .|+++ .++
T Consensus 314 ~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp-----------~~a 382 (433)
T 3qww_A 314 PSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSL-----------NVA 382 (433)
T ss_dssp HHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCH-----------HHH
T ss_pred HHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCCh-----------HHH
Confidence 35677777776531 245555 577899999999999999999999999987 46655 134
Q ss_pred hhhhhhHHHHHHcCCcHHHHHHHHHHHHc-----CCCCHHH
Q 026773 173 GIILKKLIRVSHFNRFEEGAEQFRIDVAQ-----NPNDTEE 208 (233)
Q Consensus 173 ~a~~~rG~al~~lGryeeAi~~f~kAL~l-----nP~d~e~ 208 (233)
..++|+|.+|..+|+|++|++.|++|+++ .|++|..
T Consensus 383 ~~l~nLa~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~ 423 (433)
T 3qww_A 383 SMWLKLGRLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYI 423 (433)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHH
T ss_pred HHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHH
Confidence 46789999999999999999999999986 6777754
No 202
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=98.14 E-value=5.7e-06 Score=77.46 Aligned_cols=86 Identities=5% Similarity=-0.106 Sum_probs=71.5
Q ss_pred HcCCHHHHHHHHHHHHhh-----CCCCCCCccchhhhhhhhhhhhhhhHHHHHHcCCcHHHHHHHHHHHHc-----CCCC
Q 026773 136 RQGDVVGSVAEFDKAIEL-----DPRQKISGKGAYRFTISIVGIILKKLIRVSHFNRFEEGAEQFRIDVAQ-----NPND 205 (233)
Q Consensus 136 ~lGdyeeAIadfdkAIeL-----dP~~~~~~~~~y~~~~~~~~a~~~rG~al~~lGryeeAi~~f~kAL~l-----nP~d 205 (233)
..|+|++|+..+++++++ .|+++ .++.+++++|.+|..+|+|++|++.+++++++ .|++
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp-----------~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~H 378 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNV-----------YMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYS 378 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSH-----------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSC
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhch-----------HHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCC
Confidence 468999999999999996 45554 23557889999999999999999999999976 6777
Q ss_pred HHH---HHHHHHHHHHcCCHHHHHHHHHhh
Q 026773 206 TEE---SIWCFLCEAQLYGVDEARNRFLEA 232 (233)
Q Consensus 206 ~e~---~~~~~l~~a~Lg~~dEA~~~~l~~ 232 (233)
|+. +.+++..+..+|+++||...+.++
T Consensus 379 p~~a~~l~nLa~~~~~qg~~~eA~~~~~~A 408 (433)
T 3qww_A 379 LNVASMWLKLGRLYMGLENKAAGEKALKKA 408 (433)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Confidence 765 345667788999999999998775
No 203
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.13 E-value=1e-05 Score=76.86 Aligned_cols=96 Identities=11% Similarity=0.003 Sum_probs=74.4
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHHHcCCcHHHHHHHHHHHHc-----CCCC
Q 026773 131 GMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSHFNRFEEGAEQFRIDVAQ-----NPND 205 (233)
Q Consensus 131 G~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~lGryeeAi~~f~kAL~l-----nP~d 205 (233)
...+..+|+|++|+..+++++++.-+.-- .. ++.++.+++++|.+|..+|+|++|+..+++++++ .|++
T Consensus 316 a~~~~~qg~~~eA~~l~~~aL~~~~~~lg----~~--Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~H 389 (490)
T 3n71_A 316 IDKARSEGLYHEVVKLCRECLEKQEPVFA----DT--NLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNN 389 (490)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHTTTBC----TT--SHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTC
T ss_pred HHHHHhCCCHHHHHHHHHHHHHHHHHhcC----CC--CHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCC
Confidence 33456799999999999999998533220 00 0124567889999999999999999999999976 6777
Q ss_pred HHH---HHHHHHHHHHcCCHHHHHHHHHhh
Q 026773 206 TEE---SIWCFLCEAQLYGVDEARNRFLEA 232 (233)
Q Consensus 206 ~e~---~~~~~l~~a~Lg~~dEA~~~~l~~ 232 (233)
|+. +.+++..+..+|+++||...+.++
T Consensus 390 p~~a~~l~nLa~~~~~~G~~~eA~~~~~~A 419 (490)
T 3n71_A 390 AQLGMAVMRAGLTNWHAGHIEVGHGMICKA 419 (490)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 764 345667788999999999988765
No 204
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=98.12 E-value=6.8e-06 Score=76.49 Aligned_cols=103 Identities=9% Similarity=-0.064 Sum_probs=81.1
Q ss_pred hhHHHhccCcchHHHHHHHHhcc---cCCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-----CCCCCCccc
Q 026773 95 APTFTRRLFIPSVSGIWDALTGG---NNNSRE---AVVAIRRGMLLFRQGDVVGSVAEFDKAIELD-----PRQKISGKG 163 (233)
Q Consensus 95 ~~~~~r~~~~~~a~~i~~~~i~~---~l~P~~---a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLd-----P~~~~~~~~ 163 (233)
+..+.+.+-+.+|+..+.+++.. .+-|++ +.++.++|.++..+|+|++|+..+++++++- |+++
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp----- 368 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHP----- 368 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCH-----
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCCh-----
Confidence 34455555667788888887632 245555 5789999999999999999999999999874 5555
Q ss_pred hhhhhhhhhhhhhhhHHHHHHcCCcHHHHHHHHHHHHc-----CCCCHHH
Q 026773 164 AYRFTISIVGIILKKLIRVSHFNRFEEGAEQFRIDVAQ-----NPNDTEE 208 (233)
Q Consensus 164 ~y~~~~~~~~a~~~rG~al~~lGryeeAi~~f~kAL~l-----nP~d~e~ 208 (233)
..+..++++|.+|..+|++++|++.|++|+++ .|++|..
T Consensus 369 ------~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~ 412 (429)
T 3qwp_A 369 ------VRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLI 412 (429)
T ss_dssp ------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHH
T ss_pred ------HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHH
Confidence 12346789999999999999999999999986 6888764
No 205
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=98.11 E-value=1.1e-05 Score=59.89 Aligned_cols=57 Identities=9% Similarity=0.015 Sum_probs=52.5
Q ss_pred hhhHHHHHHcCC---cHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhh
Q 026773 176 LKKLIRVSHFNR---FEEGAEQFRIDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLEA 232 (233)
Q Consensus 176 ~~rG~al~~lGr---yeeAi~~f~kAL~lnP~d~e~~~~~~l~~a~Lg~~dEA~~~~l~~ 232 (233)
..+|.+++..++ .++|.+.+++++++||+++.+.+.++....+.|++++|+..+.++
T Consensus 10 ~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~ 69 (93)
T 3bee_A 10 AAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLL 69 (93)
T ss_dssp HHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 359999988877 799999999999999999999999999999999999999998764
No 206
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=98.11 E-value=9.7e-06 Score=86.67 Aligned_cols=119 Identities=12% Similarity=0.061 Sum_probs=87.4
Q ss_pred ccccccccchhHHHhccCcchH-------HHHHHHHhcccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCC
Q 026773 86 PRGHYLQNRAPTFTRRLFIPSV-------SGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQK 158 (233)
Q Consensus 86 ~~~h~~~~~~~~~~r~~~~~~a-------~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~ 158 (233)
...+.+++|..-+.+.+....| .+-|++++......+++.+|+++|.++...|++++||+.|.|| +++
T Consensus 1060 i~lglyEEAf~IYkKa~~~~~A~~VLie~i~nldrAiE~Aervn~p~vWsqLAKAql~~G~~kEAIdsYiKA-----dD~ 1134 (1630)
T 1xi4_A 1060 ISNELFEEAFAIFRKFDVNTSAVQVLIEHIGNLDRAYEFAERCNEPAVWSQLAKAQLQKGMVKEAIDSYIKA-----DDP 1134 (1630)
T ss_pred HhCCCHHHHHHHHHHcCCHHHHHHHHHHHHhhHHHHHHHHHhcCCHHHHHHHHHHHHhCCCHHHHHHHHHhc-----CCh
Confidence 5556667777777777755554 2335555533345789999999999999999999999999997 555
Q ss_pred CCccchhhhhhhhhhhhhhhHHHHHHcCCcHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHH
Q 026773 159 ISGKGAYRFTISIVGIILKKLIRVSHFNRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQLYGVDE 224 (233)
Q Consensus 159 ~~~~~~y~~~~~~~~a~~~rG~al~~lGryeeAi~~f~kAL~lnP~d~e~~~~~~l~~a~Lg~~dE 224 (233)
..+ .+.|.++..+|+|++|++.|.+|.+.+++. ..-.+.+.|+++++++++
T Consensus 1135 -----say---------~eVa~~~~~lGkyEEAIeyL~mArk~~~e~-~Idt~LafaYAKl~rlee 1185 (1630)
T 1xi4_A 1135 -----SSY---------MEVVQAANTSGNWEELVKYLQMARKKARES-YVETELIFALAKTNRLAE 1185 (1630)
T ss_pred -----HHH---------HHHHHHHHHcCCHHHHHHHHHHHHhhcccc-cccHHHHHHHHhhcCHHH
Confidence 232 359999999999999999999999888542 122346666666666664
No 207
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.97 E-value=6.8e-05 Score=57.95 Aligned_cols=79 Identities=9% Similarity=-0.009 Sum_probs=66.8
Q ss_pred chHHHHHHHHhcccCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHH
Q 026773 105 PSVSGIWDALTGGNNNSREAVVAIRRGMLLFR----QGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLI 180 (233)
Q Consensus 105 ~~a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~----lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~ 180 (233)
+.|...|.++. + ..++.+++++|.++.. .+|+++|+..|++|.+.. ++ .. +.++|.
T Consensus 42 ~~A~~~~~~Aa--~--~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g--~~-----~a---------~~~Lg~ 101 (138)
T 1klx_A 42 QKLFQYLSKAC--E--LNSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLN--DQ-----DG---------CLILGY 101 (138)
T ss_dssp HHHHHHHHHHH--H--TTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT--CH-----HH---------HHHHHH
T ss_pred HHHHHHHHHHH--c--CCCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcCC--CH-----HH---------HHHHHH
Confidence 34777888877 3 3899999999999999 899999999999999983 34 23 335999
Q ss_pred HHHH----cCCcHHHHHHHHHHHHcCC
Q 026773 181 RVSH----FNRFEEGAEQFRIDVAQNP 203 (233)
Q Consensus 181 al~~----lGryeeAi~~f~kAL~lnP 203 (233)
++.. .+++++|++.|++|.+...
T Consensus 102 ~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 102 KQYAGKGVVKNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp HHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence 9999 9999999999999999854
No 208
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=97.95 E-value=3.7e-05 Score=69.76 Aligned_cols=173 Identities=12% Similarity=0.076 Sum_probs=110.7
Q ss_pred hHHhHhhHhH---hhhhhhhhhhhhHhhhhhccCCCCCc--hhhhHHhhhhccCCcchhhccccccccccccccccchhH
Q 026773 23 KILHLHQLYY---YKFCIFFQFTSMALTQHVLKPTINPP--LYSFHRSLLTSKAPLSVQTHINSLFSTPRGHYLQNRAPT 97 (233)
Q Consensus 23 ~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~h~~~~~~~~ 97 (233)
...++|+-|| |.-||= ...+ ++| .|+- ++-..||.+-=..+-+ ....+|+..+. .....
T Consensus 16 ~lf~ikn~fy~G~yq~~i~-e~~~-------~~~-~~~~~~~~~~~Rs~iAlg~~~~-~~~~~~~~~a~------~~la~ 79 (310)
T 3mv2_B 16 DYFNIKQNYYTGNFVQCLQ-EIEK-------FSK-VTDNTLLFYKAKTLLALGQYQS-QDPTSKLGKVL------DLYVQ 79 (310)
T ss_dssp CTHHHHHHHTTTCHHHHTH-HHHT-------SSC-CCCHHHHHHHHHHHHHTTCCCC-CCSSSTTHHHH------HHHHH
T ss_pred HHHHHHHHHHhhHHHHHHH-HHHh-------cCc-cchHHHHHHHHHHHHHcCCCcc-CCCCCHHHHHH------HHHHH
Confidence 4568888888 777774 3221 334 2332 2334687763222222 22344432111 11122
Q ss_pred HHhccCcchHHHHHHHHhcccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC--CCCCCccchhhhhhhhhhhh
Q 026773 98 FTRRLFIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDP--RQKISGKGAYRFTISIVGII 175 (233)
Q Consensus 98 ~~r~~~~~~a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP--~~~~~~~~~y~~~~~~~~a~ 175 (233)
+.+ .++...+++.+ +..+.+..++...|.++...|++++|++.+.+.|..+| ++. +++
T Consensus 80 ~~~----~~a~~~l~~l~--~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~l--------------ea~ 139 (310)
T 3mv2_B 80 FLD----TKNIEELENLL--KDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTT--------------ELL 139 (310)
T ss_dssp HHT----TTCCHHHHHTT--TTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHH--------------HHH
T ss_pred Hhc----ccHHHHHHHHH--hcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcH--------------HHH
Confidence 222 22666777776 45567788889999999999999999999999999998 333 233
Q ss_pred hhhHHHHHHcCCcHHHHHHHHHHHHcCCC-----CHHHHHHHH--HHHHHcC--CHHHHHHHHHhh
Q 026773 176 LKKLIRVSHFNRFEEGAEQFRIDVAQNPN-----DTEESIWCF--LCEAQLY--GVDEARNRFLEA 232 (233)
Q Consensus 176 ~~rG~al~~lGryeeAi~~f~kAL~lnP~-----d~e~~~~~~--l~~a~Lg--~~dEA~~~~l~~ 232 (233)
...+.++..+||.+.|.+.+++..+.+|+ +. ..+... .+....| ++++|...|.+.
T Consensus 140 ~l~vqi~L~~~r~d~A~k~l~~~~~~~~d~~~~~d~-~l~~Laea~v~l~~g~~~~q~A~~~f~El 204 (310)
T 3mv2_B 140 LLAIEVALLNNNVSTASTIFDNYTNAIEDTVSGDNE-MILNLAESYIKFATNKETATSNFYYYEEL 204 (310)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSCHHHHHHHH-HHHHHHHHHHHHHHTCSTTTHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhcCccccccchH-HHHHHHHHHHHHHhCCccHHHHHHHHHHH
Confidence 45899999999999999999999999993 33 223332 2244445 788888887763
No 209
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.93 E-value=3.3e-05 Score=71.87 Aligned_cols=89 Identities=8% Similarity=-0.143 Sum_probs=73.1
Q ss_pred HHHHcCCHHHHHHHHHHHHhhC-----CCCCCCccchhhhhhhhhhhhhhhHHHHHHcCCcHHHHHHHHHHHHc-----C
Q 026773 133 LLFRQGDVVGSVAEFDKAIELD-----PRQKISGKGAYRFTISIVGIILKKLIRVSHFNRFEEGAEQFRIDVAQ-----N 202 (233)
Q Consensus 133 a~~~lGdyeeAIadfdkAIeLd-----P~~~~~~~~~y~~~~~~~~a~~~rG~al~~lGryeeAi~~f~kAL~l-----n 202 (233)
-+..+|+|++|++.+++++++. |+++ ..+.+++++|.+|..+|+|++|++.+++++++ .
T Consensus 296 ~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~-----------~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg 364 (429)
T 3qwp_A 296 ELKAHWKWEQVLAMCQAIISSNSERLPDINI-----------YQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFP 364 (429)
T ss_dssp HHHHTTCHHHHHHHHHHHHTCSSCCCCTTSH-----------HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSC
T ss_pred HHHhhccHHHHHHHHHHHHHhccCcCCccch-----------HHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcC
Confidence 3457899999999999999874 4443 23567889999999999999999999999976 5
Q ss_pred CCCHHH---HHHHHHHHHHcCCHHHHHHHHHhh
Q 026773 203 PNDTEE---SIWCFLCEAQLYGVDEARNRFLEA 232 (233)
Q Consensus 203 P~d~e~---~~~~~l~~a~Lg~~dEA~~~~l~~ 232 (233)
|++|+. +.+++..+..+|+++||...+.++
T Consensus 365 ~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~A 397 (429)
T 3qwp_A 365 GSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLA 397 (429)
T ss_dssp SSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 777765 345667788999999999988765
No 210
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=97.82 E-value=0.00011 Score=64.02 Aligned_cols=120 Identities=9% Similarity=0.040 Sum_probs=86.2
Q ss_pred chHHHHHHHHhc----ccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHH
Q 026773 105 PSVSGIWDALTG----GNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLI 180 (233)
Q Consensus 105 ~~a~~i~~~~i~----~~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~ 180 (233)
..+..++..++. ....+.-+.++.++|.++..+|+|++|+..+++++..-..... +. ..+.++++.|.
T Consensus 112 ~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~---~~-----~~~~~~~~~~~ 183 (434)
T 4b4t_Q 112 DDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDD---KP-----SLVDVHLLESK 183 (434)
T ss_dssp HHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSC---ST-----HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhccc---ch-----hHHHHHHHHHH
Confidence 344555555441 1344556889999999999999999999999999987554331 01 13457788999
Q ss_pred HHHHcCCcHHHHHHHHHHHHcCCC---CHH--HHHH--HHHHHHHcCCHHHHHHHHHhh
Q 026773 181 RVSHFNRFEEGAEQFRIDVAQNPN---DTE--ESIW--CFLCEAQLYGVDEARNRFLEA 232 (233)
Q Consensus 181 al~~lGryeeAi~~f~kAL~lnP~---d~e--~~~~--~~l~~a~Lg~~dEA~~~~l~~ 232 (233)
++..+|++++|...+++++.+.+. ++. ..++ .+......+++++|...|.++
T Consensus 184 ~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a 242 (434)
T 4b4t_Q 184 VYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFES 242 (434)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHH
T ss_pred HHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 999999999999999999987543 222 2222 234445779999998887653
No 211
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=97.79 E-value=0.00017 Score=65.40 Aligned_cols=118 Identities=8% Similarity=-0.084 Sum_probs=90.4
Q ss_pred hHHHhccCcchHHHHHHHHhcccCCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-----CCCCccchhhhh
Q 026773 96 PTFTRRLFIPSVSGIWDALTGGNNNS--REAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPR-----QKISGKGAYRFT 168 (233)
Q Consensus 96 ~~~~r~~~~~~a~~i~~~~i~~~l~P--~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~-----~~~~~~~~y~~~ 168 (233)
..+...+-..+|...+.+.+ ..+| ++.+++...+.++..+|+.+.|.+.+++..+.+|+ +. ...+
T Consensus 108 ~i~~~~g~~eeAL~~l~~~i--~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~~~d~~~~~d~------~l~~ 179 (310)
T 3mv2_B 108 TAQAILGDLDKSLETCVEGI--DNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNAIEDTVSGDNE------MILN 179 (310)
T ss_dssp HHHHHHTCHHHHHHHHHHHH--TSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCHHHHHHHH------HHHH
T ss_pred HHHHHcCCHHHHHHHHHHHh--ccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCccccccchH------HHHH
Confidence 33444556677888888887 6665 89999999999999999999999999999999993 33 1111
Q ss_pred hhhhhhhhhhHHHHHHcC--CcHHHHHHHHHHHHcCCCCHH-HHHHHHHHHHHcCCHHHHHHHHH
Q 026773 169 ISIVGIILKKLIRVSHFN--RFEEGAEQFRIDVAQNPNDTE-ESIWCFLCEAQLYGVDEARNRFL 230 (233)
Q Consensus 169 ~~~~~a~~~rG~al~~lG--ryeeAi~~f~kAL~lnP~d~e-~~~~~~l~~a~Lg~~dEA~~~~l 230 (233)
+--|++....| ++++|...|+++.+..|+... ..++. |..++|+++||...+.
T Consensus 180 -------Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln--~~~~~g~~~eAe~~L~ 235 (310)
T 3mv2_B 180 -------LAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLN--LHLQQRNIAEAQGIVE 235 (310)
T ss_dssp -------HHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHH--HHHHHTCHHHHHHHHH
T ss_pred -------HHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHH--HHHHcCCHHHHHHHHH
Confidence 22355566667 999999999999887775211 22333 8889999999999874
No 212
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=97.73 E-value=0.00024 Score=76.13 Aligned_cols=105 Identities=9% Similarity=-0.118 Sum_probs=79.6
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchh--hhh-----------hhhhhhhhhhHHHHHHcC
Q 026773 120 NSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAY--RFT-----------ISIVGIILKKLIRVSHFN 186 (233)
Q Consensus 120 ~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y--~~~-----------~~~~~a~~~rG~al~~lG 186 (233)
..+++.+|...|.++...|+|++|++.+..|++.+|+...-..-.+ .-. ..-...+.+.|..++..|
T Consensus 1130 KAdD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~Idt~LafaYAKl~rleele~fI~~~n~ad~~~iGd~le~eg 1209 (1630)
T 1xi4_A 1130 KADDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKTNRLAELEEFINGPNNAHIQQVGDRCYDEK 1209 (1630)
T ss_pred hcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccccccHHHHHHHHhhcCHHHHHHHHhCCCHHHHHHHHHHHHhcC
Confidence 4699999999999999999999999999999999976410000000 000 011345667999999999
Q ss_pred CcHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhh
Q 026773 187 RFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLEA 232 (233)
Q Consensus 187 ryeeAi~~f~kAL~lnP~d~e~~~~~~l~~a~Lg~~dEA~~~~l~~ 232 (233)
+|++|+..|.++ ..|.-.+.|+.++|++++|.+.+.++
T Consensus 1210 ~YeeA~~~Y~kA--------~ny~rLA~tLvkLge~q~AIEaarKA 1247 (1630)
T 1xi4_A 1210 MYDAAKLLYNNV--------SNFGRLASTLVHLGEYQAAVDGARKA 1247 (1630)
T ss_pred CHHHHHHHHHhh--------hHHHHHHHHHHHhCCHHHHHHHHHHh
Confidence 999999999986 24556678888999999999988765
No 213
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=97.71 E-value=0.00012 Score=58.71 Aligned_cols=97 Identities=9% Similarity=0.096 Sum_probs=77.7
Q ss_pred chHHHHHHHHhcccCCCCCHHHHHHHHHHHHHcCCHHH---HHHHHHHHHhhC-CCCCCCccchhhhhhhhhhhhhhhHH
Q 026773 105 PSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVG---SVAEFDKAIELD-PRQKISGKGAYRFTISIVGIILKKLI 180 (233)
Q Consensus 105 ~~a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~lGdyee---AIadfdkAIeLd-P~~~~~~~~~y~~~~~~~~a~~~rG~ 180 (233)
...+.-|.... +.++.+.++-++.++++....+..+ +|..++..++-+ |... ..+.+. +|+
T Consensus 18 ~~~~~~y~~e~--~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~----Rd~lY~---------LAv 82 (126)
T 1nzn_A 18 LKFEKKFQSEK--AAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQ----RDYVFY---------LAV 82 (126)
T ss_dssp HHHHHHHHHHH--HHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHH----HHHHHH---------HHH
T ss_pred HHHHHHHHHHh--ccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchH----HHHHHH---------HHH
Confidence 34455666665 5678999999999999999988877 999999999987 5222 134444 999
Q ss_pred HHHHcCCcHHHHHHHHHHHHcCCCCHHHHHHHHHHH
Q 026773 181 RVSHFNRFEEGAEQFRIDVAQNPNDTEESIWCFLCE 216 (233)
Q Consensus 181 al~~lGryeeAi~~f~kAL~lnP~d~e~~~~~~l~~ 216 (233)
.++++|+|++|...++..|+++|+|.++......+.
T Consensus 83 g~yklg~Y~~A~~~~~~lL~~eP~n~QA~~Lk~~i~ 118 (126)
T 1nzn_A 83 GNYRLKEYEKALKYVRGLLQTEPQNNQAKELERLID 118 (126)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 999999999999999999999999998766655443
No 214
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=97.65 E-value=0.00012 Score=69.78 Aligned_cols=114 Identities=10% Similarity=-0.018 Sum_probs=77.9
Q ss_pred hhHHHhccCcchHHHHHHHHhcccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhh
Q 026773 95 APTFTRRLFIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGI 174 (233)
Q Consensus 95 ~~~~~r~~~~~~a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a 174 (233)
...+...+.+.+|..+|+.+ ..|..+|.++.++|+|++|++.|.+|. +| ..|. .++++
T Consensus 129 Gd~~~~~g~yeeA~~~Y~~a----------~n~~~LA~~L~~Lg~yq~AVea~~KA~--~~---------~~Wk-~v~~a 186 (449)
T 1b89_A 129 GDRCYDEKMYDAAKLLYNNV----------SNFGRLASTLVHLGEYQAAVDGARKAN--ST---------RTWK-EVCFA 186 (449)
T ss_dssp --------CTTTHHHHHHHT----------TCHHHHHHHHHTTTCHHHHHHHHHHHT--CH---------HHHH-HHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHh----------hhHHHHHHHHHHhccHHHHHHHHHHcC--Cc---------hhHH-HHHHH
Confidence 34566666777788788755 478899999999999999999999992 33 3343 23344
Q ss_pred hhhhH-----------------------HHHHHcCCcHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH--cCCHHHHHHHH
Q 026773 175 ILKKL-----------------------IRVSHFNRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQ--LYGVDEARNRF 229 (233)
Q Consensus 175 ~~~rG-----------------------~al~~lGryeeAi~~f~kAL~lnP~d~e~~~~~~l~~a~--Lg~~dEA~~~~ 229 (233)
+...| ..|...|+++||++.+++++.+++.+...+.-++.++++ -++..|+...|
T Consensus 187 Cv~~~ef~lA~~~~l~L~~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le~ah~~~ftel~il~~ky~p~k~~ehl~~~ 266 (449)
T 1b89_A 187 CVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELF 266 (449)
T ss_dssp HHHTTCHHHHHHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHcCcHHHHHHHHHHHHhCHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 44444 678888999999999999999998887776666666663 45556666555
Q ss_pred H
Q 026773 230 L 230 (233)
Q Consensus 230 l 230 (233)
.
T Consensus 267 ~ 267 (449)
T 1b89_A 267 W 267 (449)
T ss_dssp S
T ss_pred H
Confidence 3
No 215
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=97.55 E-value=0.00023 Score=70.30 Aligned_cols=111 Identities=7% Similarity=0.052 Sum_probs=89.0
Q ss_pred HHHHHHHHhcccCCCCCHHHHHHHHHHHHHcCCHHHHH-HHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHHHc
Q 026773 107 VSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSV-AEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSHF 185 (233)
Q Consensus 107 a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~lGdyeeAI-adfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~l 185 (233)
+..+|.+++ ...|.+++.|+..+..+...|+.++|+ +.|++|+...|.+. ..|. ..+...-..
T Consensus 328 v~~~Ye~aL--~~~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~------~Lwl--------~~a~~ee~~ 391 (679)
T 4e6h_A 328 MTYVYMQAA--QHVCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSA------VLAF--------SLSEQYELN 391 (679)
T ss_dssp HHHHHHHHH--HHTTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCH------HHHH--------HHHHHHHHT
T ss_pred HHHHHHHHH--HHcCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCH------HHHH--------HHHHHHHHh
Confidence 345688887 789999999999999999999999998 99999999999876 4443 477778889
Q ss_pred CCcHHHHHHHHHHHHc-----------CCCC---------HHHHHHHHHH--HHHcCCHHHHHHHHHhhC
Q 026773 186 NRFEEGAEQFRIDVAQ-----------NPND---------TEESIWCFLC--EAQLYGVDEARNRFLEAR 233 (233)
Q Consensus 186 GryeeAi~~f~kAL~l-----------nP~d---------~e~~~~~~l~--~a~Lg~~dEA~~~~l~~~ 233 (233)
|++++|.+.|++++.. .|.+ ....+|...+ +.+.|+.++|+..|..+|
T Consensus 392 ~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~ 461 (679)
T 4e6h_A 392 TKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCR 461 (679)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 9999999999999985 2532 1223566544 346789999999998763
No 216
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=97.54 E-value=0.00013 Score=69.50 Aligned_cols=79 Identities=8% Similarity=-0.032 Sum_probs=44.5
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHHHcCCcHHHHHHHHHHHHc
Q 026773 122 REAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSHFNRFEEGAEQFRIDVAQ 201 (233)
Q Consensus 122 ~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~lGryeeAi~~f~kAL~l 201 (233)
.+..+|...|..++..|+|++|+..|+++ . .+. .+|.++.++|+|++|++.|+++
T Consensus 120 pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a-------~------n~~---------~LA~~L~~Lg~yq~AVea~~KA--- 174 (449)
T 1b89_A 120 PNNAHIQQVGDRCYDEKMYDAAKLLYNNV-------S------NFG---------RLASTLVHLGEYQAAVDGARKA--- 174 (449)
T ss_dssp C----------------CTTTHHHHHHHT-------T------CHH---------HHHHHHHTTTCHHHHHHHHHHH---
T ss_pred CcHHHHHHHHHHHHHcCCHHHHHHHHHHh-------h------hHH---------HHHHHHHHhccHHHHHHHHHHc---
Confidence 34469999999999999999999999987 2 223 4999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHH
Q 026773 202 NPNDTEESIWCFLCEAQLYGVDEARN 227 (233)
Q Consensus 202 nP~d~e~~~~~~l~~a~Lg~~dEA~~ 227 (233)
++++.|-....+....|+++.|..
T Consensus 175 --~~~~~Wk~v~~aCv~~~ef~lA~~ 198 (449)
T 1b89_A 175 --NSTRTWKEVCFACVDGKEFRLAQM 198 (449)
T ss_dssp --TCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred --CCchhHHHHHHHHHHcCcHHHHHH
Confidence 345433222233335555555543
No 217
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=97.52 E-value=0.00032 Score=51.80 Aligned_cols=59 Identities=7% Similarity=-0.210 Sum_probs=49.5
Q ss_pred hhhhhHHHHHHcCCcHHHHHHHHHHHHcC-------CCCHHHHHHHHHHHHHcCCHHHHHHHHHhh
Q 026773 174 IILKKLIRVSHFNRFEEGAEQFRIDVAQN-------PNDTEESIWCFLCEAQLYGVDEARNRFLEA 232 (233)
Q Consensus 174 a~~~rG~al~~lGryeeAi~~f~kAL~ln-------P~d~e~~~~~~l~~a~Lg~~dEA~~~~l~~ 232 (233)
-++.+|..++..|+|+.|+.+|++|++.. +..++.+..++.|+.++|++++|...+.++
T Consensus 7 dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~a 72 (104)
T 2v5f_A 7 DCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKL 72 (104)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 34569999999999999999999999974 234566677788899999999999988764
No 218
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=97.35 E-value=0.00045 Score=56.91 Aligned_cols=79 Identities=9% Similarity=0.073 Sum_probs=66.8
Q ss_pred CHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHHHcC---CcHHHHHHHHHHHHcC-C-CCHHHHHHHH
Q 026773 139 DVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSHFN---RFEEGAEQFRIDVAQN-P-NDTEESIWCF 213 (233)
Q Consensus 139 dyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~lG---ryeeAi~~f~kAL~ln-P-~d~e~~~~~~ 213 (233)
+...+.+.|+++++.+|.+. ...+ +.|+++.+.+ +.++|+..++..++.+ | ++.+..++++
T Consensus 13 ~l~~~~~~y~~e~~~~~~~~-----~~~F---------~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LA 78 (152)
T 1pc2_A 13 DLLKFEKKFQSEKAAGSVSK-----STQF---------EYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLA 78 (152)
T ss_dssp HHHHHHHHHHHHHHTTCCCH-----HHHH---------HHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCCCcH-----HHHH---------HHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHH
Confidence 35677888999999888655 3333 4899999999 7779999999999999 7 5688889999
Q ss_pred HHHHHcCCHHHHHHHHHh
Q 026773 214 LCEAQLYGVDEARNRFLE 231 (233)
Q Consensus 214 l~~a~Lg~~dEA~~~~l~ 231 (233)
.+..++|++++|+.++..
T Consensus 79 v~~~kl~~Y~~A~~y~~~ 96 (152)
T 1pc2_A 79 VGNYRLKEYEKALKYVRG 96 (152)
T ss_dssp HHHHHTSCHHHHHHHHHH
T ss_pred HHHHHccCHHHHHHHHHH
Confidence 999999999999998865
No 219
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=97.07 E-value=0.0077 Score=54.95 Aligned_cols=109 Identities=9% Similarity=-0.035 Sum_probs=83.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhh--------hhhhhhhhhHHHHHHcCCcHHHHHHHH
Q 026773 125 VVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTI--------SIVGIILKKLIRVSHFNRFEEGAEQFR 196 (233)
Q Consensus 125 ~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~--------~~~~a~~~rG~al~~lGryeeAi~~f~ 196 (233)
+.....|......|+.++|++.+++|+++=-..+..|-....|.. ....+...+..++...|++++|+...+
T Consensus 116 ~~l~~~~~~~~~~~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~~l~~g~~~~a~~~l~ 195 (388)
T 2ff4_A 116 VAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAELE 195 (388)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 344556666677899999999999999996544331111122321 225666778888999999999999999
Q ss_pred HHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhC
Q 026773 197 IDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLEAR 233 (233)
Q Consensus 197 kAL~lnP~d~e~~~~~~l~~a~Lg~~dEA~~~~l~~~ 233 (233)
+++..+|-+-..+..+-.++...|+..+|...|...|
T Consensus 196 ~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r 232 (388)
T 2ff4_A 196 ALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVK 232 (388)
T ss_dssp HHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred HHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 9999999988877777788899999999999998754
No 220
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=97.05 E-value=0.011 Score=48.49 Aligned_cols=85 Identities=8% Similarity=0.030 Sum_probs=71.2
Q ss_pred CCCCHHHHHHHHHHHHHcCCH---HHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHHHcCCcHHHHHHHH
Q 026773 120 NSREAVVAIRRGMLLFRQGDV---VGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSHFNRFEEGAEQFR 196 (233)
Q Consensus 120 ~P~~a~Ay~~RG~a~~~lGdy---eeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~lGryeeAi~~f~ 196 (233)
++-++++-++.++++....+. .++|..++..++-+|... ..+.+. +++.++++|+|++|.+..+
T Consensus 35 ~~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~----RdcLYy---------LAvg~ykl~~Y~~Ar~y~d 101 (144)
T 1y8m_A 35 PTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRR----RECLYY---------LTIGCYKLGEYSMAKRYVD 101 (144)
T ss_dssp TTSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTH----HHHHHH---------HHHHHHTTTCHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccch----hHHHHH---------HHHHHHHhhhHHHHHHHHH
Confidence 467899999999999998755 479999999999888654 245555 9999999999999999999
Q ss_pred HHHHcCCCCHHHHHHHHHHHH
Q 026773 197 IDVAQNPNDTEESIWCFLCEA 217 (233)
Q Consensus 197 kAL~lnP~d~e~~~~~~l~~a 217 (233)
..|+++|+|.++.....++..
T Consensus 102 ~lL~~eP~n~QA~~Lk~~Ie~ 122 (144)
T 1y8m_A 102 TLFEHERNNKQVGALKSMVED 122 (144)
T ss_dssp HHHHTCCCCHHHHHHHHHHHH
T ss_pred HHHhcCCCcHHHHHHHHHHHH
Confidence 999999999987666554443
No 221
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=96.91 E-value=0.0059 Score=51.18 Aligned_cols=103 Identities=9% Similarity=-0.008 Sum_probs=76.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHHHcCCcHHHHHHHHHHHHcC-
Q 026773 124 AVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSHFNRFEEGAEQFRIDVAQN- 202 (233)
Q Consensus 124 a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~lGryeeAi~~f~kAL~ln- 202 (233)
-.+++.-...++..|.|+-|+-..+.++.+..+++ ...-....+.++...|.+++..|+|..|...|++||.+.
T Consensus 20 ~~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~-----~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k 94 (167)
T 3ffl_A 20 HMNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNP-----ELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKK 94 (167)
T ss_dssp -CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHST-----TSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCc-----ccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHH
Confidence 45566667778899999999999999888865444 110001123455668999999999999999999986642
Q ss_pred -----C-------------------CCHHHHHHHHHHHHHcCCHHHHHHHHHh
Q 026773 203 -----P-------------------NDTEESIWCFLCEAQLYGVDEARNRFLE 231 (233)
Q Consensus 203 -----P-------------------~d~e~~~~~~l~~a~Lg~~dEA~~~~l~ 231 (233)
| .+.|..+..+.|+.++++.++|+..++.
T Consensus 95 ~l~k~~s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~ 147 (167)
T 3ffl_A 95 ALSKTSKVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDG 147 (167)
T ss_dssp CC--------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHT
T ss_pred HHhcCCCccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhc
Confidence 1 1225667888999999999999998875
No 222
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=96.89 E-value=0.0064 Score=49.32 Aligned_cols=83 Identities=8% Similarity=0.028 Sum_probs=68.7
Q ss_pred CCHHHHHHHHHHHHHcCCH---HHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHHHcCCcHHHHHHHHHH
Q 026773 122 REAVVAIRRGMLLFRQGDV---VGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSHFNRFEEGAEQFRID 198 (233)
Q Consensus 122 ~~a~Ay~~RG~a~~~lGdy---eeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~lGryeeAi~~f~kA 198 (233)
-++.+-++.++++....+. .++|..++..++-+|... ..+.|. +++.++++|+|++|.+..+..
T Consensus 38 vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~----Rd~LYy---------LAvg~yklgdY~~Ar~y~d~l 104 (134)
T 3o48_A 38 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRR----RECLYY---------LTIGCYKLGEYSMAKRYVDTL 104 (134)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGH----HHHHHH---------HHHHHHHHTCHHHHHHHHHHH
T ss_pred CChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchh----HHHHHH---------HHHHHHHhhhHHHHHHHHHHH
Confidence 4788999999999988755 579999999999998543 145555 999999999999999999999
Q ss_pred HHcCCCCHHHHHHHHHHHH
Q 026773 199 VAQNPNDTEESIWCFLCEA 217 (233)
Q Consensus 199 L~lnP~d~e~~~~~~l~~a 217 (233)
++++|+|.++......+.-
T Consensus 105 L~~eP~N~QA~~Lk~~Ie~ 123 (134)
T 3o48_A 105 FEHERNNKQVGALKSMVED 123 (134)
T ss_dssp HTTCTTCHHHHHHHHHHHH
T ss_pred HhhCCCCHHHHHHHHHHHH
Confidence 9999999987666555443
No 223
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=96.83 E-value=0.0086 Score=50.00 Aligned_cols=105 Identities=12% Similarity=0.052 Sum_probs=80.3
Q ss_pred CCCCCHHHHHHHHHHHHHcCCH------HHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHHHcCCcHHHH
Q 026773 119 NNSREAVVAIRRGMLLFRQGDV------VGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSHFNRFEEGA 192 (233)
Q Consensus 119 l~P~~a~Ay~~RG~a~~~lGdy------eeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~lGryeeAi 192 (233)
+.|+|++.|...-...-..|+. ++-++.|++|++.-|-.. .-.|. +-+.++.+-+.- ..+++.++|.
T Consensus 8 ~~p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k-----~~~wr-rYI~LWIrYA~~-~ei~D~d~aR 80 (161)
T 4h7y_A 8 MMANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDK-----YGQNE-SFARIQVRFAEL-KAIQEPDDAR 80 (161)
T ss_dssp --CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGG-----GTTCH-HHHHHHHHHHHH-HHHHCGGGCH
T ss_pred eCCCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccc-----cccHH-HHHHHHHHHHHH-HHhcCHHHHH
Confidence 6899999999998888888999 999999999999888433 22343 334455555544 6779999999
Q ss_pred HHHHHHHHcCCCCHHHHHHHHHH--HHHcCCHHHHHHHHHhh
Q 026773 193 EQFRIDVAQNPNDTEESIWCFLC--EAQLYGVDEARNRFLEA 232 (233)
Q Consensus 193 ~~f~kAL~lnP~d~e~~~~~~l~--~a~Lg~~dEA~~~~l~~ 232 (233)
+.|+.++.+....+ -+|...+ +.++|+.+.|+..+.++
T Consensus 81 ~vy~~a~~~hKkFA--Kiwi~~AqFEiRqgnl~kARkILg~A 120 (161)
T 4h7y_A 81 DYFQMARANCKKFA--FVHISFAQFELSQGNVKKSKQLLQKA 120 (161)
T ss_dssp HHHHHHHHHCTTBH--HHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHH--HHHHHHHHHHHHcccHHHHHHHHHHH
Confidence 99999999977774 4565545 56899999999887653
No 224
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=96.80 E-value=0.0066 Score=59.89 Aligned_cols=97 Identities=12% Similarity=0.010 Sum_probs=73.4
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHHHcCC-cHHHHHHHHHHHHc
Q 026773 123 EAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSHFNR-FEEGAEQFRIDVAQ 201 (233)
Q Consensus 123 ~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~lGr-yeeAi~~f~kAL~l 201 (233)
.+.+|........+.|+.++|.+.|++|++..|... .- +|...+..-...|+ ++.|.+.|+++++.
T Consensus 433 ~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~-----~~--------lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~ 499 (679)
T 4e6h_A 433 LTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVT-----PD--------IYLENAYIEYHISKDTKTACKVLELGLKY 499 (679)
T ss_dssp HHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSC-----TH--------HHHHHHHHHHTTTSCCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCC-----hH--------HHHHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 456888888888899999999999999999834322 12 22345666666655 99999999999999
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHhh
Q 026773 202 NPNDTEESIWCFLCEAQLYGVDEARNRFLEA 232 (233)
Q Consensus 202 nP~d~e~~~~~~l~~a~Lg~~dEA~~~~l~~ 232 (233)
.|+++..+.-..--+...|+.+.|+..|+.+
T Consensus 500 ~p~~~~~w~~y~~fe~~~~~~~~AR~lfera 530 (679)
T 4e6h_A 500 FATDGEYINKYLDFLIYVNEESQVKSLFESS 530 (679)
T ss_dssp HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred CCCchHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 9999875433333355789999999999865
No 225
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=96.71 E-value=0.019 Score=53.77 Aligned_cols=49 Identities=12% Similarity=0.050 Sum_probs=44.9
Q ss_pred HHHHHHHHhcccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCC
Q 026773 107 VSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQK 158 (233)
Q Consensus 107 a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~ 158 (233)
+..+|.+++ ...|.++..|...+..+...|+.++|...|++|++. |++.
T Consensus 198 v~~~ye~al--~~~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~-P~~~ 246 (493)
T 2uy1_A 198 MHFIHNYIL--DSFYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM-SDGM 246 (493)
T ss_dssp HHHHHHHHH--HHTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CCSS
T ss_pred HHHHHHHHH--HcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC-CCcH
Confidence 556888887 778999999999999999999999999999999999 9876
No 226
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=96.31 E-value=0.055 Score=50.91 Aligned_cols=111 Identities=10% Similarity=0.041 Sum_probs=83.1
Q ss_pred chHHHHHHHHhcccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCCCCccchhhhhhhhhhhhhhhHHHH
Q 026773 105 PSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIEL--DPRQKISGKGAYRFTISIVGIILKKLIRV 182 (233)
Q Consensus 105 ~~a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeL--dP~~~~~~~~~y~~~~~~~~a~~~rG~al 182 (233)
..|..++++.....+.| |..+|..+=.++.+.|++++|++.|++..+. .|+.. .|+ ..=.++
T Consensus 87 ~~A~~lf~~M~~~G~~P-d~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~-------tyn--------~lI~~~ 150 (501)
T 4g26_A 87 SRGFDIFKQMIVDKVVP-NEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLR-------SYG--------PALFGF 150 (501)
T ss_dssp HHHHHHHHHHHHTTCCC-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHH-------HHH--------HHHHHH
T ss_pred HHHHHHHHHHHHhCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccc-------eeh--------HHHHHH
Confidence 45677888766333455 5678888888999999999999999998875 46433 222 355677
Q ss_pred HHcCCcHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHhh
Q 026773 183 SHFNRFEEGAEQFRIDVAQ--NPNDTEESIWCFLCEAQLYGVDEARNRFLEA 232 (233)
Q Consensus 183 ~~lGryeeAi~~f~kAL~l--nP~d~e~~~~~~l~~a~Lg~~dEA~~~~l~~ 232 (233)
...|+.++|.+.|++..+. .|+ ...+...-.++++.|+.++|...+.+-
T Consensus 151 ~~~g~~~~A~~l~~~M~~~G~~Pd-~~ty~~Li~~~~~~g~~d~A~~ll~~M 201 (501)
T 4g26_A 151 CRKGDADKAYEVDAHMVESEVVPE-EPELAALLKVSMDTKNADKVYKTLQRL 201 (501)
T ss_dssp HHTTCHHHHHHHHHHHHHTTCCCC-HHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHhcCCCCC-HHHHHHHHHHHhhCCCHHHHHHHHHHH
Confidence 8899999999999998874 454 333444456778999999999998764
No 227
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=94.76 E-value=0.043 Score=45.94 Aligned_cols=105 Identities=10% Similarity=0.081 Sum_probs=68.0
Q ss_pred cchhHHHhccCcchHHHHHHHHhccc-CCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC---CCCCC--
Q 026773 93 NRAPTFTRRLFIPSVSGIWDALTGGN-NNSR------EAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDP---RQKIS-- 160 (233)
Q Consensus 93 ~~~~~~~r~~~~~~a~~i~~~~i~~~-l~P~------~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP---~~~~~-- 160 (233)
+-+..+-..+....|+-+.+.++... .+|+ .+.+++.+|.+++..|+|.+|...|++||.+.- +++..
T Consensus 25 dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~~ 104 (167)
T 3ffl_A 25 DHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVRP 104 (167)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC--------
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCccc
Confidence 33445555566677887888776332 3333 246889999999999999999999999987742 22200
Q ss_pred --ccc-hh---hhhhhhhhhhhhhHHHHHHcCCcHHHHHHHHH
Q 026773 161 --GKG-AY---RFTISIVGIILKKLIRVSHFNRFEEGAEQFRI 197 (233)
Q Consensus 161 --~~~-~y---~~~~~~~~a~~~rG~al~~lGryeeAi~~f~k 197 (233)
|-. .+ .+..+=++.-+..+.++..+|++++|+...+.
T Consensus 105 ~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~ 147 (167)
T 3ffl_A 105 STGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDG 147 (167)
T ss_dssp ------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHT
T ss_pred cccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhc
Confidence 000 00 00000024445689999999999999998764
No 228
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=94.59 E-value=0.66 Score=43.50 Aligned_cols=122 Identities=9% Similarity=-0.065 Sum_probs=85.6
Q ss_pred cchhHHHhccCcchHHHHHHHHhcccCCCCCHHHHHHHHHHHHHcC---------CHHHHHHHHHHHHhh--CCCCCCCc
Q 026773 93 NRAPTFTRRLFIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQG---------DVVGSVAEFDKAIEL--DPRQKISG 161 (233)
Q Consensus 93 ~~~~~~~r~~~~~~a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~lG---------dyeeAIadfdkAIeL--dP~~~~~~ 161 (233)
..+..+.|.+-..+|..+|++.....+.| |..+|..+=.++...| +.++|.+.|++..+. .|+..
T Consensus 31 ~~id~c~k~G~~~~A~~lf~~M~~~Gv~p-d~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~--- 106 (501)
T 4g26_A 31 QKLDMCSKKGDVLEALRLYDEARRNGVQL-SQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEA--- 106 (501)
T ss_dssp HHHHHTTTSCCHHHHHHHHHHHHHHTCCC-CHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHH---
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHcCCCC-CHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHH---
Confidence 34566778888888999999886333555 4556655544444433 478899999988765 35432
Q ss_pred cchhhhhhhhhhhhhhhHHHHHHcCCcHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHh
Q 026773 162 KGAYRFTISIVGIILKKLIRVSHFNRFEEGAEQFRIDVAQ--NPNDTEESIWCFLCEAQLYGVDEARNRFLE 231 (233)
Q Consensus 162 ~~~y~~~~~~~~a~~~rG~al~~lGryeeAi~~f~kAL~l--nP~d~e~~~~~~l~~a~Lg~~dEA~~~~l~ 231 (233)
.|+ .+-.++...|+.++|++.|++..+. .|+ ...+.-.-.++++.|+.++|...|.+
T Consensus 107 ----tyn--------~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd-~~tyn~lI~~~~~~g~~~~A~~l~~~ 165 (501)
T 4g26_A 107 ----TFT--------NGARLAVAKDDPEMAFDMVKQMKAFGIQPR-LRSYGPALFGFCRKGDADKAYEVDAH 165 (501)
T ss_dssp ----HHH--------HHHHHHHHHTCHHHHHHHHHHHHHTTCCCC-HHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred ----HHH--------HHHHHHHhcCCHHHHHHHHHHHHHcCCCCc-cceehHHHHHHHHCCCHHHHHHHHHH
Confidence 222 4666788899999999999998874 454 43444445677899999999998875
No 229
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=94.02 E-value=0.14 Score=40.79 Aligned_cols=79 Identities=8% Similarity=0.045 Sum_probs=62.7
Q ss_pred CHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHHHcCCcHH---HHHHHHHHHHcC-C-CCHHHHHHHH
Q 026773 139 DVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSHFNRFEE---GAEQFRIDVAQN-P-NDTEESIWCF 213 (233)
Q Consensus 139 dyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~lGryee---Ai~~f~kAL~ln-P-~d~e~~~~~~ 213 (233)
+...+.+.|+++++.++... ..- ++.++++.+..+..+ +|..++..++-+ | +..+..++++
T Consensus 16 ~l~~~~~~y~~e~~~~~~s~-----~~~---------F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LA 81 (126)
T 1nzn_A 16 DLLKFEKKFQSEKAAGSVSK-----STQ---------FEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLA 81 (126)
T ss_dssp HHHHHHHHHHHHHHHSCCCH-----HHH---------HHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCCCcH-----HHH---------HHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHH
Confidence 45567778888888777444 233 348999999988888 999999999987 5 4567778899
Q ss_pred HHHHHcCCHHHHHHHHHh
Q 026773 214 LCEAQLYGVDEARNRFLE 231 (233)
Q Consensus 214 l~~a~Lg~~dEA~~~~l~ 231 (233)
.+..++|++++|+.++..
T Consensus 82 vg~yklg~Y~~A~~~~~~ 99 (126)
T 1nzn_A 82 VGNYRLKEYEKALKYVRG 99 (126)
T ss_dssp HHHHHTTCHHHHHHHHHH
T ss_pred HHHHHhhhHHHHHHHHHH
Confidence 999999999999988753
No 230
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=93.89 E-value=0.04 Score=44.64 Aligned_cols=73 Identities=11% Similarity=0.112 Sum_probs=52.7
Q ss_pred chhhccccccccccccccccchhHHHhccCcchHHHHHHHHhcccCCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 026773 74 SVQTHINSLFSTPRGHYLQNRAPTFTRRLFIPSVSGIWDALTGGNNNS-REAVVAIRRGMLLFRQGDVVGSVAEFDKAIE 152 (233)
Q Consensus 74 ~~~~~~n~~~~~~~~h~~~~~~~~~~r~~~~~~a~~i~~~~i~~~l~P-~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIe 152 (233)
|.++.-|-....++..+-.+- .....+...+. +.+| +.-+-++.++..++++|+|++|....++.++
T Consensus 39 s~qt~F~yAw~Lv~S~~~~d~----------~~GI~LLe~l~--~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~ 106 (134)
T 3o48_A 39 TIQSRFNYAWGLIKSTDVNDE----------RLGVKILTDIY--KEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 106 (134)
T ss_dssp CHHHHHHHHHHHHHSSCHHHH----------HHHHHHHHHHH--HHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHT
T ss_pred ChhhHHHHHHHHHcCCCHHHH----------HHHHHHHHHHH--hcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 555555555555554432222 23445555555 4557 4578899999999999999999999999999
Q ss_pred hCCCCC
Q 026773 153 LDPRQK 158 (233)
Q Consensus 153 LdP~~~ 158 (233)
++|++.
T Consensus 107 ~eP~N~ 112 (134)
T 3o48_A 107 HERNNK 112 (134)
T ss_dssp TCTTCH
T ss_pred hCCCCH
Confidence 999887
No 231
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=93.73 E-value=0.49 Score=44.12 Aligned_cols=93 Identities=12% Similarity=0.003 Sum_probs=61.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHHHcC-CcHHHHHHHHHHHHcCC
Q 026773 125 VVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSHFN-RFEEGAEQFRIDVAQNP 203 (233)
Q Consensus 125 ~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~lG-ryeeAi~~f~kAL~lnP 203 (233)
.+|........+.|+.++|.+.|++| ..|... .-.| ...+..-+..+ +.+.|.+.|+++++.-|
T Consensus 287 ~lw~~y~~~~~r~~~~~~AR~i~~~A--~~~~~~-----~~v~--------i~~A~lE~~~~~d~~~ar~ife~al~~~~ 351 (493)
T 2uy1_A 287 LLRINHLNYVLKKRGLELFRKLFIEL--GNEGVG-----PHVF--------IYCAFIEYYATGSRATPYNIFSSGLLKHP 351 (493)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHHHHHH--TTSCCC-----HHHH--------HHHHHHHHHHHCCSHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHh--hCCCCC-----hHHH--------HHHHHHHHHHCCChHHHHHHHHHHHHHCC
Confidence 34555554455678899999999999 345422 1222 23455555555 69999999999999889
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHhh
Q 026773 204 NDTEESIWCFLCEAQLYGVDEARNRFLEA 232 (233)
Q Consensus 204 ~d~e~~~~~~l~~a~Lg~~dEA~~~~l~~ 232 (233)
++++.+.-..--+..+|+.+.|+..|..+
T Consensus 352 ~~~~~~~~yid~e~~~~~~~~aR~l~er~ 380 (493)
T 2uy1_A 352 DSTLLKEEFFLFLLRIGDEENARALFKRL 380 (493)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHS
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 88864322222245788889998877653
No 232
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=93.25 E-value=0.5 Score=45.11 Aligned_cols=77 Identities=10% Similarity=-0.081 Sum_probs=64.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHHHcCCcHHHHHHHHHHHHcCCCC
Q 026773 126 VAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSHFNRFEEGAEQFRIDVAQNPND 205 (233)
Q Consensus 126 Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~lGryeeAi~~f~kAL~lnP~d 205 (233)
.+..+|.+..+...++.|...|.+|+.++|+++ ..+.+ +|++....|+.-+|+-.|-+++......
T Consensus 154 ~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G-----~~~nq---------Lavla~~~~~~l~a~y~y~rsl~~~~Pf 219 (497)
T 1ya0_A 154 CLVHLGDIARYRNQTSQAESYYRHAAQLVPSNG-----QPYNQ---------LAILASSKGDHLTTIFYYCRSIAVKFPF 219 (497)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBS-----HHHHH---------HHHHHHHTTCHHHHHHHHHHHHSSSBCC
T ss_pred HHHHcccHHHHHHHHHHHHHHHHHHHHhCCCCC-----chHHH---------HHHHHhcccccHHHHHHHHHHHhcCCCC
Confidence 557899999999999999999999999999998 44444 9999999999999999999999877767
Q ss_pred HHHHHHHHHHH
Q 026773 206 TEESIWCFLCE 216 (233)
Q Consensus 206 ~e~~~~~~l~~ 216 (233)
+.+.-+....+
T Consensus 220 ~~a~~nL~~~f 230 (497)
T 1ya0_A 220 PAASTNLQKAL 230 (497)
T ss_dssp HHHHHHHHHHH
T ss_pred hhHHHHHHHHH
Confidence 66655554333
No 233
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=92.98 E-value=1.2 Score=44.90 Aligned_cols=119 Identities=9% Similarity=0.071 Sum_probs=77.4
Q ss_pred cchHHHHHHHHhcccCCCCCHHHHHHHHHHHHH--c-CCHHHHHHHHHHHHh--------hCCCCCCCccchhhhhhhhh
Q 026773 104 IPSVSGIWDALTGGNNNSREAVVAIRRGMLLFR--Q-GDVVGSVAEFDKAIE--------LDPRQKISGKGAYRFTISIV 172 (233)
Q Consensus 104 ~~~a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~--l-GdyeeAIadfdkAIe--------LdP~~~~~~~~~y~~~~~~~ 172 (233)
.+.+..+...+. +.+|.....+ .+..+... . .+=-+|+....++++ +.+.+.. .....+...
T Consensus 265 ~~~a~~~le~L~--~~~p~~~~~~-~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~----~~~~~~~~~ 337 (754)
T 4gns_B 265 VDFTIDYLKGLT--KKDPIHDIYY-KTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDAD----SARLMNCMS 337 (754)
T ss_dssp HHHHHHHHHHHH--HHCGGGHHHH-HHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHH----HHHHHHHHH
T ss_pred HHHHHHHHHHHH--hhCCchhHHH-HHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccc----cccccCcch
Confidence 344666777766 6677654433 33333221 2 244568888888874 3344330 111111112
Q ss_pred hhhhhhHHHHHHcCCcHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 026773 173 GIILKKLIRVSHFNRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQLYGVDEARNRF 229 (233)
Q Consensus 173 ~a~~~rG~al~~lGryeeAi~~f~kAL~lnP~d~e~~~~~~l~~a~Lg~~dEA~~~~ 229 (233)
....-...-+...|+|+-|++...+|+...|.+-+.|+.+..|+..+|+++.|+-.+
T Consensus 338 ~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtL 394 (754)
T 4gns_B 338 DLLNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAI 394 (754)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHH
Confidence 223334455556799999999999999999999999999999999999999998654
No 234
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=92.80 E-value=0.46 Score=48.96 Aligned_cols=112 Identities=10% Similarity=0.020 Sum_probs=73.5
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-hCCCCCCCccchh--------hhhhhhhhhhhhhHHHHHHcCCcH
Q 026773 119 NNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIE-LDPRQKISGKGAY--------RFTISIVGIILKKLIRVSHFNRFE 189 (233)
Q Consensus 119 l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIe-LdP~~~~~~~~~y--------~~~~~~~~a~~~rG~al~~lGrye 189 (233)
..|.++..-+.+|.+++..|++++|...|.+|-. +.++........- .+.......|+..-...-..|-++
T Consensus 837 ~~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~ 916 (1139)
T 4fhn_B 837 WLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYI 916 (1139)
T ss_dssp HSCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCH
T ss_pred hccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccccccccHHHHHHHHHHHHHHcCCHH
Confidence 4578888889999999999999999999998732 1111110000000 000011223444566677789999
Q ss_pred HHHHHHHHHHHcCCCCHH-----HHHHHHHHHHHcCCHHHHHHHHH
Q 026773 190 EGAEQFRIDVAQNPNDTE-----ESIWCFLCEAQLYGVDEARNRFL 230 (233)
Q Consensus 190 eAi~~f~kAL~lnP~d~e-----~~~~~~l~~a~Lg~~dEA~~~~l 230 (233)
.+++....||+..+.+.+ -|...+.+...+|++++|-..+.
T Consensus 917 ~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~ 962 (1139)
T 4fhn_B 917 DALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALM 962 (1139)
T ss_dssp HHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHH
T ss_pred HHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHH
Confidence 999999999987654332 12334567778999999987764
No 235
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=92.71 E-value=0.31 Score=44.22 Aligned_cols=62 Identities=10% Similarity=0.062 Sum_probs=50.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHHHcCCcHHHHHHHHHHHH
Q 026773 125 VVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSHFNRFEEGAEQFRIDVA 200 (233)
Q Consensus 125 ~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~lGryeeAi~~f~kAL~ 200 (233)
.+...+..++...|++++|+...+++++.+|-+- ..+.. +=.+++..|+..+|++.|++.-+
T Consensus 172 ~a~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E-----~~~~~---------lm~al~~~Gr~~~Al~~y~~~r~ 233 (388)
T 2ff4_A 172 LAHTAKAEAEIACGRASAVIAELEALTFEHPYRE-----PLWTQ---------LITAYYLSDRQSDALGAYRRVKT 233 (388)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCH-----HHHHH---------HHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH-----HHHHH---------HHHHHHHcCCHHHHHHHHHHHHH
Confidence 3445667778899999999999999999999776 34333 77889999999999999988544
No 236
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=91.88 E-value=0.13 Score=42.00 Aligned_cols=50 Identities=12% Similarity=0.074 Sum_probs=41.6
Q ss_pred HHHHHHHHhcccCCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCC
Q 026773 107 VSGIWDALTGGNNNS-REAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQK 158 (233)
Q Consensus 107 a~~i~~~~i~~~l~P-~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~ 158 (233)
...+...+. ..+| +.-+-.+.++..++++|+|++|....+..++++|++.
T Consensus 61 GI~LLe~l~--~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~ 111 (144)
T 1y8m_A 61 GVKILTDIY--KEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNK 111 (144)
T ss_dssp HHHHHHHHH--HHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCH
T ss_pred HHHHHHHHH--hcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcH
Confidence 444555555 4556 5678889999999999999999999999999999886
No 237
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=91.82 E-value=0.26 Score=44.09 Aligned_cols=62 Identities=16% Similarity=0.191 Sum_probs=53.3
Q ss_pred HHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHHHcCCcHHHHHHHHHHHHcCCCCHHH
Q 026773 133 LLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSHFNRFEEGAEQFRIDVAQNPNDTEE 208 (233)
Q Consensus 133 a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~lGryeeAi~~f~kAL~lnP~d~e~ 208 (233)
.+++.|+.++|++.....|+-+|.++ ...+. +-..+.-.|+++.|.+.++.+.+++|+....
T Consensus 6 ~ll~~g~L~~al~~~~~~VR~~P~da-----~~R~~---------LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~ 67 (273)
T 1zbp_A 6 NALSEGQLQQALELLIEAIKASPKDA-----SLRSS---------FIELLCIDGDFERADEQLMQSIKLFPEYLPG 67 (273)
T ss_dssp HHTTTTCHHHHHHHHHHHHHTCTTCH-----HHHHH---------HHHHHHHHTCHHHHHHHHHHHHHHCGGGHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHhCCcCH-----HHHHH---------HHHHHHhcCCHHHHHHHHHHHHHhCchhhHH
Confidence 35678999999999999999999998 56665 7788889999999999999999999976543
No 238
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=89.66 E-value=3.2 Score=38.41 Aligned_cols=97 Identities=11% Similarity=0.005 Sum_probs=72.8
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHHHcCCcHHHHHHHHHHHHcC---CC
Q 026773 128 IRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSHFNRFEEGAEQFRIDVAQN---PN 204 (233)
Q Consensus 128 ~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~lGryeeAi~~f~kAL~ln---P~ 204 (233)
..+|..++..|+|.+|++.+.+..+--.+.. +.. .++++++....++..++++..+.+.+++|.... +.
T Consensus 103 ~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~d----d~~----~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~ 174 (394)
T 3txn_A 103 ARLIALYFDTALYTEALALGAQLLRELKKLD----DKN----LLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYC 174 (394)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHTTSS----CTH----HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHhccc----cch----hHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCC
Confidence 4889999999999999999999887543322 011 246788889999999999999999999987654 23
Q ss_pred CHHHH--H--HHHHHHH-HcCCHHHHHHHHHhh
Q 026773 205 DTEES--I--WCFLCEA-QLYGVDEARNRFLEA 232 (233)
Q Consensus 205 d~e~~--~--~~~l~~a-~Lg~~dEA~~~~l~~ 232 (233)
+|... + ..|.... ..+++++|-..|.++
T Consensus 175 ~p~i~a~i~~~~Gi~~l~~~rdyk~A~~~F~ea 207 (394)
T 3txn_A 175 PPKVQGALDLQSGILHAADERDFKTAFSYFYEA 207 (394)
T ss_dssp CHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhhHHHHHhccCHHHHHHHHHHH
Confidence 34322 2 2345566 789999999999874
No 239
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=89.60 E-value=1.5 Score=41.17 Aligned_cols=32 Identities=9% Similarity=0.049 Sum_probs=27.1
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 026773 119 NNSREAVVAIRRGMLLFRQGDVVGSVAEFDKA 150 (233)
Q Consensus 119 l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkA 150 (233)
...++...|..+|......|+++.|+.+|.++
T Consensus 676 ~~~~~~~~W~~la~~al~~~~~~~A~~~y~~~ 707 (814)
T 3mkq_A 676 TDESAEMKWRALGDASLQRFNFKLAIEAFTNA 707 (814)
T ss_dssp TTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HhhCcHhHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence 45577888999999999999999999988876
No 240
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=88.65 E-value=2.2 Score=36.83 Aligned_cols=76 Identities=11% Similarity=0.083 Sum_probs=61.2
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--h--CCCCCC--------CccchhhhhhhhhhhhhhhHHHHHHcCCc
Q 026773 121 SREAVVAIRRGMLLFRQGDVVGSVAEFDKAIE--L--DPRQKI--------SGKGAYRFTISIVGIILKKLIRVSHFNRF 188 (233)
Q Consensus 121 P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIe--L--dP~~~~--------~~~~~y~~~~~~~~a~~~rG~al~~lGry 188 (233)
-|-..+.+-...++..++||..|+...++.|+ . ||+... .||+.+++. ..|..+-..|+-
T Consensus 59 lNT~Ts~YYk~LCy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~ffvd~~DkEfFy~--------l~a~lltq~g~r 130 (242)
T 3kae_A 59 LNTCTSKYYESLCYKKKKDYKKAIKSLESILEGKVERDPDVDARIQEMFVDPGDEEFFES--------LLGDLCTLSGYR 130 (242)
T ss_dssp CCBHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTSCCTTCHHHHHH--------HHHHHHHHTTCH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccccccceeeeccchHHHHHH--------HHHHHHHHhcCH
Confidence 45667778888999999999999999999993 3 343221 456667665 789999999999
Q ss_pred HHHHHHHHHHHHcCCC
Q 026773 189 EEGAEQFRIDVAQNPN 204 (233)
Q Consensus 189 eeAi~~f~kAL~lnP~ 204 (233)
+||+..|.++...+|-
T Consensus 131 ~EaI~y~~~Sf~~~~l 146 (242)
T 3kae_A 131 EEGIGHYVRSFGKSFL 146 (242)
T ss_dssp HHHHHHHHHHHHHCCC
T ss_pred HHhhhHhhhhcCCccc
Confidence 9999999999988873
No 241
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=88.64 E-value=0.81 Score=42.04 Aligned_cols=100 Identities=13% Similarity=0.060 Sum_probs=74.4
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHHHcCCcHHHHHHHHHHHHc
Q 026773 122 REAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSHFNRFEEGAEQFRIDVAQ 201 (233)
Q Consensus 122 ~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~lGryeeAi~~f~kAL~l 201 (233)
.-..++..+|..+...||+++|++.|.++...-.... .++++++..-.+....+++..+....+++-.+
T Consensus 129 e~~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~-----------~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~ 197 (429)
T 4b4t_R 129 EQAQAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTG-----------AKIDVMLTIARLGFFYNDQLYVKEKLEAVNSM 197 (429)
T ss_dssp CCSSCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCC-----------SHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChH-----------HHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 3456889999999999999999999999988765443 13456667778888899999999999998665
Q ss_pred C--CCCHHHH----HHHHHHHHHcCCHHHHHHHHHhh
Q 026773 202 N--PNDTEES----IWCFLCEAQLYGVDEARNRFLEA 232 (233)
Q Consensus 202 n--P~d~e~~----~~~~l~~a~Lg~~dEA~~~~l~~ 232 (233)
- ..+++.. ...++.....+++.+|-..|.++
T Consensus 198 ~~~~~d~~~~~~lk~~~gl~~l~~r~f~~Aa~~f~e~ 234 (429)
T 4b4t_R 198 IEKGGDWERRNRYKTYYGIHCLAVRNFKEAAKLLVDS 234 (429)
T ss_dssp HTTCCCTHHHHHHHHHHHHGGGGTSCHHHHHHHHHHH
T ss_pred hhcCCCHHHHHHHHHHHHHHHHHhChHHHHHHHHHHH
Confidence 2 2333332 12234445678999999888764
No 242
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=88.34 E-value=3.8 Score=35.35 Aligned_cols=93 Identities=8% Similarity=0.049 Sum_probs=67.3
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHHHcCCcHHHHHHHHHH
Q 026773 119 NNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSHFNRFEEGAEQFRID 198 (233)
Q Consensus 119 l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~lGryeeAi~~f~kA 198 (233)
+-|+.++--..+|..++..|+|..|+-... .+|.- ...+. ..+++..+.+|..|+.+.+..
T Consensus 28 L~~~~~eY~lL~~I~LyyngEY~R~Lf~L~---~lNT~-------Ts~YY---------k~LCy~klKdYkkA~~~le~i 88 (242)
T 3kae_A 28 LLPCKPEYRMLMSIVLYLNGEYTRALFHLH---KLNTC-------TSKYY---------ESLCYKKKKDYKKAIKSLESI 88 (242)
T ss_dssp HC----CTHHHHHHHHHHTTCHHHHHHHHH---TCCBH-------HHHHH---------HHHHHHHTTCHHHHHHHHHHH
T ss_pred HccCChHHHhhhhhhhhhcchHhHHHHHHH---hcchH-------HHHHH---------HHHHHHHHHHHHHHHHHHHHH
Confidence 447777777889999999999999886643 33331 23333 799999999999999999998
Q ss_pred H--H---------------cCCCCHHHHHH-HHHHHHHcCCHHHHHHHHH
Q 026773 199 V--A---------------QNPNDTEESIW-CFLCEAQLYGVDEARNRFL 230 (233)
Q Consensus 199 L--~---------------lnP~d~e~~~~-~~l~~a~Lg~~dEA~~~~l 230 (233)
+ + +||.|-|.... .+....+.|+.+||+..+.
T Consensus 89 l~~kvd~d~~~d~~~~~ffvd~~DkEfFy~l~a~lltq~g~r~EaI~y~~ 138 (242)
T 3kae_A 89 LEGKVERDPDVDARIQEMFVDPGDEEFFESLLGDLCTLSGYREEGIGHYV 138 (242)
T ss_dssp HTTCSBCCCCCCHHHHTTSCCTTCHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HhcccccCcccccccceeeeccchHHHHHHHHHHHHHHhcCHHHhhhHhh
Confidence 8 2 24677775443 4566679999999998774
No 243
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=86.74 E-value=4.1 Score=36.38 Aligned_cols=57 Identities=14% Similarity=0.075 Sum_probs=46.5
Q ss_pred hccCcchHHHHHHHHhcccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCC
Q 026773 100 RRLFIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQK 158 (233)
Q Consensus 100 r~~~~~~a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~ 158 (233)
+.+-+..+.+.....+ +.+|.|+..-..+-..+...|+++.|..-.+.+.+++|...
T Consensus 9 ~~g~L~~al~~~~~~V--R~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~ 65 (273)
T 1zbp_A 9 SEGQLQQALELLIEAI--KASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYL 65 (273)
T ss_dssp TTTCHHHHHHHHHHHH--HTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGH
T ss_pred hCCCHHHHHHHHHHHH--HhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhh
Confidence 3333344554555555 79999999999999999999999999999999999999765
No 244
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=86.32 E-value=0.29 Score=47.39 Aligned_cols=92 Identities=15% Similarity=0.036 Sum_probs=66.3
Q ss_pred CCCCchhhhHHhhhhccCCcchhhcccccccc-ccccccccchhHHHhccCcchHHHHHHHHhcccC---CCCCHHHHHH
Q 026773 54 TINPPLYSFHRSLLTSKAPLSVQTHINSLFST-PRGHYLQNRAPTFTRRLFIPSVSGIWDALTGGNN---NSREAVVAIR 129 (233)
Q Consensus 54 ~~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~-~~~h~~~~~~~~~~r~~~~~~a~~i~~~~i~~~l---~P~~a~Ay~~ 129 (233)
.|=|+|.+.||+.....-+..+++.+|.+... +..+ ....|+.+-+++.--+. |+.-+.-++.
T Consensus 209 ~ir~~Ll~~~rta~lr~D~~~qa~l~nllLRnYL~~~-------------~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY 275 (523)
T 4b4t_S 209 ILRSTMMKFLKIASLKHDNETKAMLINLILRDFLNNG-------------EVDSASDFISKLEYPHTDVSSSLEARYFFY 275 (523)
T ss_dssp HHHTHHHHHHHHCCSCSSSCHHHHHHHHHHHHHHHSS-------------CSTTHHHHHHHHCSCTTTSCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcccCcchhHHHHHHHHHHHHccC-------------cHHHHHHHHhcCcCCcccCCHHHHHHHHHH
Confidence 46688999999999999999999999987654 2222 22345555554431011 1112455677
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCCC
Q 026773 130 RGMLLFRQGDVVGSVAEFDKAIELDPRQK 158 (233)
Q Consensus 130 RG~a~~~lGdyeeAIadfdkAIeLdP~~~ 158 (233)
.|.++..+++|.+|.+++..|++.-|...
T Consensus 276 ~GRI~a~q~~Y~eA~~~L~~A~rkap~~~ 304 (523)
T 4b4t_S 276 LSKINAIQLDYSTANEYIIAAIRKAPHNS 304 (523)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHTSSCSCSS
T ss_pred HHHHHHHhccHHHHHHHHHHHHHhCCcch
Confidence 89999999999999999999999998765
No 245
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=83.79 E-value=1.7 Score=42.47 Aligned_cols=78 Identities=9% Similarity=-0.126 Sum_probs=52.1
Q ss_pred HHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHHHcCCcHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHc
Q 026773 140 VVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSHFNRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQL 219 (233)
Q Consensus 140 yeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~lGryeeAi~~f~kAL~lnP~d~e~~~~~~l~~a~L 219 (233)
..++...++++....+++. ..-|. .+.++ ..|++++|...|++.-.-....+...+|.+.+...+
T Consensus 268 ~~~~~~~~~~~~~~~~~~~-----~~e~~---------~r~Al-r~~d~~~a~~~~~~l~~~~~~~~r~~YW~~ra~~~~ 332 (618)
T 1qsa_A 268 TDEQAKWRDDAIMRSQSTS-----LIERR---------VRMAL-GTGDRRGLNTWLARLPMEAKEKDEWRYWQADLLLER 332 (618)
T ss_dssp CHHHHHHHHHHHHTCCCHH-----HHHHH---------HHHHH-HHTCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHT
T ss_pred ChHHHHHHHhccccCCChH-----HHHHH---------HHHHH-HCCCHHHHHHHHHHccccccccHhHHHHHHHHHHHc
Confidence 5567777777655433322 23344 45555 458999998888765443334566778888888888
Q ss_pred CCHHHHHHHHHhh
Q 026773 220 YGVDEARNRFLEA 232 (233)
Q Consensus 220 g~~dEA~~~~l~~ 232 (233)
|+.++|...|.++
T Consensus 333 g~~~~a~~~~~~~ 345 (618)
T 1qsa_A 333 GREAEAKEILHQL 345 (618)
T ss_dssp TCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHH
Confidence 9999888877653
No 246
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=80.06 E-value=12 Score=39.52 Aligned_cols=91 Identities=4% Similarity=-0.129 Sum_probs=64.7
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHh-----hCCCCCCCccchhhhhhhhhhhhhhhHHHHHHcCCcHHHHHHHHHHH
Q 026773 125 VVAIRRGMLLFRQGDVVGSVAEFDKAIE-----LDPRQKISGKGAYRFTISIVGIILKKLIRVSHFNRFEEGAEQFRIDV 199 (233)
Q Consensus 125 ~Ay~~RG~a~~~lGdyeeAIadfdkAIe-----LdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~lGryeeAi~~f~kAL 199 (233)
..|..+=..+.+.|+.++|.+.|++.-+ ..|+-. .|+ -+=..+...|+.++|.+.|++..
T Consensus 128 ~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~Pdvv-------TYN--------tLI~Glck~G~~~eA~~Lf~eM~ 192 (1134)
T 3spa_A 128 QRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLD-------MYN--------AVMLGWARQGAFKELVYVLFMVK 192 (1134)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHH-------HHH--------HHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHh-------HHH--------HHHHHHHhCCCHHHHHHHHHHHH
Confidence 3466666788899999999999977543 467544 222 35566788999999999999987
Q ss_pred H--cCCCCHHHHHHHHHHHHHcCCH-HHHHHHHHh
Q 026773 200 A--QNPNDTEESIWCFLCEAQLYGV-DEARNRFLE 231 (233)
Q Consensus 200 ~--lnP~d~e~~~~~~l~~a~Lg~~-dEA~~~~l~ 231 (233)
+ +.|| .-.|.-.-.|+++.|+. ++|...|.+
T Consensus 193 ~~G~~PD-vvTYntLI~glcK~G~~~e~A~~Ll~E 226 (1134)
T 3spa_A 193 DAGLTPD-LLSYAAALQCMGRQDQDAGTIERCLEQ 226 (1134)
T ss_dssp HTTCCCC-HHHHHHHHHHHHHHTCCHHHHHHHHHH
T ss_pred HcCCCCc-HHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence 7 4565 33344444578888874 677777664
No 247
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=79.85 E-value=11 Score=35.29 Aligned_cols=22 Identities=14% Similarity=-0.103 Sum_probs=20.4
Q ss_pred hhHHHHHHcCCcHHHHHHHHHH
Q 026773 177 KKLIRVSHFNRFEEGAEQFRID 198 (233)
Q Consensus 177 ~rG~al~~lGryeeAi~~f~kA 198 (233)
++|......|+++.|+++|.++
T Consensus 686 ~la~~al~~~~~~~A~~~y~~~ 707 (814)
T 3mkq_A 686 ALGDASLQRFNFKLAIEAFTNA 707 (814)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHc
Confidence 6999999999999999999884
No 248
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=79.84 E-value=6.9 Score=32.56 Aligned_cols=30 Identities=10% Similarity=0.014 Sum_probs=27.1
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 026773 122 REAVVAIRRGMLLFRQGDVVGSVAEFDKAI 151 (233)
Q Consensus 122 ~~a~Ay~~RG~a~~~lGdyeeAIadfdkAI 151 (233)
++..-|..+|.+-...|+++=|..+|.++=
T Consensus 32 ~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~ 61 (177)
T 3mkq_B 32 NDSITWERLIQEALAQGNASLAEMIYQTQH 61 (177)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHcCChHHHHHHHHHhC
Confidence 678899999999999999999999998863
No 249
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=77.01 E-value=3.4 Score=41.54 Aligned_cols=59 Identities=10% Similarity=0.010 Sum_probs=48.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHHHcCCcHHHHHHHHHH
Q 026773 126 VAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSHFNRFEEGAEQFRID 198 (233)
Q Consensus 126 Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~lGryeeAi~~f~kA 198 (233)
.+.....-+...|+|+-|++...+|+.+-|... ..|+ .++.+|..+|+||.|+=.++-+
T Consensus 339 LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF-----~tW~---------~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 339 LLNIQTNFLLNRGDYELALGVSNTSTELALDSF-----ESWY---------NLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCH-----HHHH---------HHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHHHHHHHhccCcHHHHHHHHHHHHhcCchhh-----HHHH---------HHHHHHHHhccHHHHHHHHhcC
Confidence 344445556678999999999999999999988 3433 5999999999999999877765
No 250
>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A
Probab=74.21 E-value=4.4 Score=29.32 Aligned_cols=29 Identities=31% Similarity=0.369 Sum_probs=27.2
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 026773 128 IRRGMLLFRQGDVVGSVAEFDKAIELDPR 156 (233)
Q Consensus 128 ~~RG~a~~~lGdyeeAIadfdkAIeLdP~ 156 (233)
..+|-.+...|++++|+.+|-+||..-|+
T Consensus 21 V~~GE~L~~~g~~~~~~~hf~nAl~Vc~q 49 (73)
T 3ax2_A 21 IQLGEELLAQGDYEKGVDHLTNAIAVCGQ 49 (73)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTCSS
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHcCC
Confidence 57899999999999999999999999985
No 251
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=73.61 E-value=14 Score=30.66 Aligned_cols=83 Identities=11% Similarity=-0.056 Sum_probs=60.8
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHHHcCCcHHHHHHHHHHHHcC
Q 026773 123 EAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSHFNRFEEGAEQFRIDVAQN 202 (233)
Q Consensus 123 ~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~lGryeeAi~~f~kAL~ln 202 (233)
.+..|...+.. ...+|.++|-+.|+.|+.+..+++ -.|- ..+.--...|+...|.+.+.+|+.+.
T Consensus 60 YI~LWIrYA~~-~ei~D~d~aR~vy~~a~~~hKkFA------Kiwi--------~~AqFEiRqgnl~kARkILg~AiG~~ 124 (161)
T 4h7y_A 60 FARIQVRFAEL-KAIQEPDDARDYFQMARANCKKFA------FVHI--------SFAQFELSQGNVKKSKQLLQKAVERG 124 (161)
T ss_dssp HHHHHHHHHHH-HHHHCGGGCHHHHHHHHHHCTTBH------HHHH--------HHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHH-HHhcCHHHHHHHHHHHHHHhHHHH------HHHH--------HHHHHHHHcccHHHHHHHHHHHhccC
Confidence 45566666644 466999999999999999955543 4443 35566667899999999999999999
Q ss_pred CCCHHHHHHHHHHHHHcCC
Q 026773 203 PNDTEESIWCFLCEAQLYG 221 (233)
Q Consensus 203 P~d~e~~~~~~l~~a~Lg~ 221 (233)
|.+.+. +-.++...+.|.
T Consensus 125 ~k~~~~-le~a~~nl~~~~ 142 (161)
T 4h7y_A 125 AVPLEM-LEIALRNLNLQK 142 (161)
T ss_dssp CBCHHH-HHHHHHHHHTTC
T ss_pred CCcHHH-HHHHHHhhhcCC
Confidence 987763 455555555553
No 252
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=69.37 E-value=7.3 Score=28.40 Aligned_cols=29 Identities=17% Similarity=0.259 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 026773 125 VVAIRRGMLLFRQGDVVGSVAEFDKAIEL 153 (233)
Q Consensus 125 ~Ay~~RG~a~~~lGdyeeAIadfdkAIeL 153 (233)
..+..+|...-..|+|++|+..|.+||+.
T Consensus 20 i~lv~~Ave~D~~g~y~eAl~lY~~aie~ 48 (83)
T 2w2u_A 20 RKYAINAVKADKEGNAEEAITNYKKAIEV 48 (83)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 35678888899999999998888887765
No 253
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=67.93 E-value=8.2 Score=27.96 Aligned_cols=30 Identities=23% Similarity=0.237 Sum_probs=24.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 026773 124 AVVAIRRGMLLFRQGDVVGSVAEFDKAIEL 153 (233)
Q Consensus 124 a~Ay~~RG~a~~~lGdyeeAIadfdkAIeL 153 (233)
+..+..++...-..|+|++|+..|.+||+.
T Consensus 11 Ai~lv~~Ave~D~~g~y~eAl~lY~~aie~ 40 (83)
T 2v6y_A 11 ARKYAILAVKADKEGKVEDAITYYKKAIEV 40 (83)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 445678888889999999998888877765
No 254
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=67.78 E-value=13 Score=35.23 Aligned_cols=58 Identities=5% Similarity=-0.108 Sum_probs=50.1
Q ss_pred hhhhhHHHHHHcCCcHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHh
Q 026773 174 IILKKLIRVSHFNRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQLYGVDEARNRFLE 231 (233)
Q Consensus 174 a~~~rG~al~~lGryeeAi~~f~kAL~lnP~d~e~~~~~~l~~a~Lg~~dEA~~~~l~ 231 (233)
.+..+|...-+.+.++.|...|.+|+.++|++...+..++......|+.-+|.-.|..
T Consensus 154 ~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~r 211 (497)
T 1ya0_A 154 CLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCR 211 (497)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHH
Confidence 4567899999999999999999999999999999988888887788888888766653
No 255
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=65.57 E-value=9.4 Score=29.18 Aligned_cols=30 Identities=23% Similarity=0.159 Sum_probs=26.3
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Q 026773 123 EAVVAIRRGMLLFRQGDVVGSVAEFDKAIE 152 (233)
Q Consensus 123 ~a~Ay~~RG~a~~~lGdyeeAIadfdkAIe 152 (233)
.|-.+-.|+..+.+.|+|++||++..+|..
T Consensus 14 ~AH~~~RrAe~ll~~gkydeAIech~kAa~ 43 (97)
T 2crb_A 14 LAHQQSRRADRLLAAGKYEEAISCHRKATT 43 (97)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hhhHhhhHHHHHHhcCCHHHHHHHHHHHHH
Confidence 467788899999999999999999998864
No 256
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=60.88 E-value=27 Score=35.38 Aligned_cols=90 Identities=10% Similarity=0.091 Sum_probs=61.4
Q ss_pred cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-hhCCCCCCCccch--------hhhhhhhhhhhhhhHHHHHHcCCc
Q 026773 118 NNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAI-ELDPRQKISGKGA--------YRFTISIVGIILKKLIRVSHFNRF 188 (233)
Q Consensus 118 ~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAI-eLdP~~~~~~~~~--------y~~~~~~~~a~~~rG~al~~lGry 188 (233)
..-|.++..=+.+|.++...|++++|...|.||= .+.+.......+. .-+.....+.|+......-..+-+
T Consensus 834 ~~~~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA~gl~~~~~~~~~~~~~~~ll~~~e~~~~~~~YY~hV~~LFE~~~a~ 913 (950)
T 4gq2_M 834 GWLNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAY 913 (950)
T ss_dssp GGCCSSHHHHHHHHHHHHHTTCHHHHHHHHHTCCCTTCSSCCSCGGGHHHHHHHHHTTTCSHHHHHHHHHHHHHHHTTCH
T ss_pred hhcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhhhcccCcccccchhhhhhccCcccccchhHHHHHHHHHHHHhcCCH
Confidence 4567888888999999999999999999999874 2222111000000 000002245677788888889999
Q ss_pred HHHHHHHHHHHHc-CCCCHH
Q 026773 189 EEGAEQFRIDVAQ-NPNDTE 207 (233)
Q Consensus 189 eeAi~~f~kAL~l-nP~d~e 207 (233)
+-+++..+.||+. +++|+.
T Consensus 914 ~~vi~fA~lAI~~~~~dd~~ 933 (950)
T 4gq2_M 914 IDALEFSLLADASKETDDED 933 (950)
T ss_dssp HHHHHHHHHHHHTCCSCCHH
T ss_pred HHHHHHHHHHHhhcccCCcc
Confidence 9999999999974 455543
No 257
>1om2_A Protein (mitochondrial import receptor subunit TOM20); mitochondrial protein import across outer membrane, receptor for presequences; NMR {Rattus norvegicus} SCOP: a.23.4.1
Probab=60.38 E-value=7.6 Score=29.47 Aligned_cols=29 Identities=31% Similarity=0.369 Sum_probs=27.0
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Q 026773 128 IRRGMLLFRQGDVVGSVAEFDKAIELDPR 156 (233)
Q Consensus 128 ~~RG~a~~~lGdyeeAIadfdkAIeLdP~ 156 (233)
..+|-.+...|++++|+.+|-+||..-|.
T Consensus 24 V~lGE~L~~~g~~e~av~Hf~nAl~Vc~q 52 (95)
T 1om2_A 24 IQLGEELLAQGDYEKGVDHLTNAIAVCGQ 52 (95)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHcCC
Confidence 57899999999999999999999999885
No 258
>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}
Probab=60.11 E-value=14 Score=27.02 Aligned_cols=30 Identities=17% Similarity=0.309 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 026773 124 AVVAIRRGMLLFRQGDVVGSVAEFDKAIEL 153 (233)
Q Consensus 124 a~Ay~~RG~a~~~lGdyeeAIadfdkAIeL 153 (233)
+..+..++.-.-..|+|++|+..|..||++
T Consensus 16 A~~lv~~Ave~D~~g~y~eAl~lY~~Aie~ 45 (86)
T 4a5x_A 16 AATVLKRAVELDSESRYPQALVCYQEGIDL 45 (86)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 445677888889999999999999998875
No 259
>2v6x_A Vacuolar protein sorting-associated protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae}
Probab=59.25 E-value=15 Score=26.32 Aligned_cols=30 Identities=3% Similarity=0.131 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 026773 124 AVVAIRRGMLLFRQGDVVGSVAEFDKAIEL 153 (233)
Q Consensus 124 a~Ay~~RG~a~~~lGdyeeAIadfdkAIeL 153 (233)
+..+..++.-.-..|+|++|+..|..|+++
T Consensus 13 A~~l~~~Av~~D~~g~y~eAl~~Y~~aie~ 42 (85)
T 2v6x_A 13 GIELVQKAIDLDTATQYEEAYTAYYNGLDY 42 (85)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 445677888888899999999999988875
No 260
>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1
Probab=59.02 E-value=14 Score=27.17 Aligned_cols=30 Identities=17% Similarity=0.333 Sum_probs=24.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 026773 124 AVVAIRRGMLLFRQGDVVGSVAEFDKAIEL 153 (233)
Q Consensus 124 a~Ay~~RG~a~~~lGdyeeAIadfdkAIeL 153 (233)
+..+..++.-.-..|+|++|+..|..||++
T Consensus 15 Ai~lv~~Ave~D~~g~y~eAl~~Y~~Aie~ 44 (93)
T 1wfd_A 15 AVAVLKRAVELDAESRYQQALVCYQEGIDM 44 (93)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 445677888888899999998888888765
No 261
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}
Probab=56.04 E-value=15 Score=30.59 Aligned_cols=34 Identities=15% Similarity=-0.008 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCC
Q 026773 125 VVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQK 158 (233)
Q Consensus 125 ~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~ 158 (233)
.-.+.+|..++..+||.+|-+++..|++.-|...
T Consensus 15 ~Y~YYlGr~~~~~~~y~~A~~~L~~A~~~~~~~~ 48 (203)
T 3t5x_A 15 TYKYYVGRKAMFDSDFKQAEEYLSFAFEHCHRSS 48 (203)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCTTC
T ss_pred HHHHHHHHHHHHHhCHHHHHHHHHHHHHHCCHhH
Confidence 4568899999999999999999999999999765
No 262
>3myv_A SUSD superfamily protein; RAGB, SUSD and hypothetical proteins, structural genomics, J center for structural genomics, JCSG; HET: MSE; 1.80A {Bacteroides vulgatus}
Probab=53.91 E-value=26 Score=32.05 Aligned_cols=55 Identities=5% Similarity=-0.139 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHHHcCCcHHHHHHHHHHHH
Q 026773 140 VVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSHFNRFEEGAEQFRIDVA 200 (233)
Q Consensus 140 yeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~lGryeeAi~~f~kAL~ 200 (233)
|+.-++|++.|+++=|.... ..++...-|..-++.++..+|+|++|++..+++|.
T Consensus 164 y~~I~~DL~~A~~~L~~~~~------~gr~tk~aa~allarvyL~~~~~~~A~~~a~~vi~ 218 (454)
T 3myv_A 164 YDFIIETLEEAVTLMSEEKN------NGRMNKYAARALLARIYLYHDDNRKAFDLADQLIK 218 (454)
T ss_dssp HHHHHHHHHHHHHHCCCSCC------TTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcccccc------CCeecHHHHHHHHHHHHHhcccHHHHHHHHHHHHh
Confidence 46688999999998776431 11112223455688999999999999999999986
No 263
>2cfu_A SDSA1; SDS-hydrolase, lactamase, hydrolase; HET: 1DB; 1.9A {Pseudomonas aeruginosa} SCOP: d.106.1.3 d.157.1.13 PDB: 2cfz_A* 2cg2_A 2cg3_A*
Probab=53.11 E-value=18 Score=35.30 Aligned_cols=49 Identities=12% Similarity=-0.052 Sum_probs=44.1
Q ss_pred hhhhhhhHHHHHHcCCcHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcC
Q 026773 172 VGIILKKLIRVSHFNRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQLY 220 (233)
Q Consensus 172 ~~a~~~rG~al~~lGryeeAi~~f~kAL~lnP~d~e~~~~~~l~~a~Lg 220 (233)
.+..+.++...+..|+|.-|.+..+.++..+|+|.++...++-++.++|
T Consensus 449 ~~~~~~~a~~~~~~g~~~wa~~l~~~~~~~~p~~~~a~~l~a~~~~~l~ 497 (658)
T 2cfu_A 449 AERLLEQARASYARGEYRWVVEVVNRLVFAEPDNRAARELQADALEQLG 497 (658)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHH
Confidence 5678889999999999999999999999999999998888877777776
No 264
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=52.46 E-value=47 Score=27.12 Aligned_cols=68 Identities=15% Similarity=0.118 Sum_probs=50.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhh-hhhHHHHHHcCCcHHHHHHHHHHHH
Q 026773 127 AIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGII-LKKLIRVSHFNRFEEGAEQFRIDVA 200 (233)
Q Consensus 127 y~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~-~~rG~al~~lGryeeAi~~f~kAL~ 200 (233)
-+..|..+|..|+|=+|-+.++.+-.-.|... +...+|+ .-|- +--|..+...|+...|...+.+++.
T Consensus 35 ~~~~~i~lFn~g~yfeaHEvLEe~W~~~~~~~---~er~~lq---GLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~ 103 (161)
T 2ijq_A 35 AVVHGVRLYNSGEFHESHDCFEDEWYNYGRGN---TESKFLH---GMVQVAAGAYKHFDFEDDDGMRSLFRTSLQ 103 (161)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHTTTTCSSS---HHHHHHH---HHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCchHHHHHHHHHHHhcCCCc---hHHHHHH---HHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 36789999999999999999999998876551 0144555 1112 2345555667999999999999987
No 265
>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.7.14.1
Probab=51.39 E-value=19 Score=27.82 Aligned_cols=29 Identities=7% Similarity=0.149 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 026773 125 VVAIRRGMLLFRQGDVVGSVAEFDKAIEL 153 (233)
Q Consensus 125 ~Ay~~RG~a~~~lGdyeeAIadfdkAIeL 153 (233)
..+..++.-.-..|+|++|+..|..|+++
T Consensus 19 i~lv~~Ave~D~ag~y~eAl~lY~~Aie~ 47 (117)
T 2cpt_A 19 IDLASKAAQEDKAGNYEEALQLYQHAVQY 47 (117)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 34567777778889999999999888874
No 266
>3kez_A Putative sugar binding protein; structural genomics, joint C structural genomics, JCSG, protein structure initiative; 1.90A {Bacteroides vulgatus atcc 8482}
Probab=47.80 E-value=34 Score=31.36 Aligned_cols=55 Identities=5% Similarity=-0.063 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHHHcCCcHHHHHHHHHHHH
Q 026773 140 VVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSHFNRFEEGAEQFRIDVA 200 (233)
Q Consensus 140 yeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~lGryeeAi~~f~kAL~ 200 (233)
|+.-++|++.|+++=|.... ..++...-|+.-++.++...|+|++|++..+++|.
T Consensus 170 y~~I~~DL~~A~~~L~~~~~------~gr~tk~aa~allArvyL~~~~~~~A~~~a~~vi~ 224 (461)
T 3kez_A 170 YTEIISDLKNSTELLSGDFN------KGKVNRWAAMTLLSRVYLYKGEYNEALTMAENAIK 224 (461)
T ss_dssp HHHHHHHHHHHHHHSCCSCC------TTSCCHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCccccC------CCeeeHHHHHHHHHHHHHHhCCHHHHHHHHHHHHh
Confidence 35678999999998776431 01112233455688899999999999999999986
No 267
>3mcx_A SUSD superfamily protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE GOL; 1.49A {Bacteroides thetaiotaomicron}
Probab=46.98 E-value=33 Score=31.44 Aligned_cols=56 Identities=5% Similarity=-0.076 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHHHcCCcHHHHHHHHHHHHc
Q 026773 140 VVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSHFNRFEEGAEQFRIDVAQ 201 (233)
Q Consensus 140 yeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~lGryeeAi~~f~kAL~l 201 (233)
|+.-++|++.|+++=|.... ..++...-|+.-++.++...|+|++|++..+++|..
T Consensus 176 y~~I~~DL~~A~~~L~~~~~------~gr~tk~aa~allarvyL~~~~~~~A~~~a~~vi~~ 231 (477)
T 3mcx_A 176 YEQVVSDMSNALSGLRQETS------NGYINYWAAQALLSRVYLNMGEYQKAYDAATDVIKN 231 (477)
T ss_dssp HHHHHHHHHHHGGGSCSSCC------TTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCccccc------CCcCcHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhC
Confidence 56678999999998775431 111122335556899999999999999999999874
No 268
>3ax2_A Mitochondrial import receptor subunit TOM20 homol; protein-protein complex, membrane protein-transport protein; 1.90A {Rattus norvegicus} PDB: 2v1s_A 3awr_A 2v1t_A 3ax5_A 3ax3_A
Probab=45.16 E-value=30 Score=24.87 Aligned_cols=32 Identities=9% Similarity=0.142 Sum_probs=28.4
Q ss_pred hhhHHHHHHcCCcHHHHHHHHHHHHcCCCCHH
Q 026773 176 LKKLIRVSHFNRFEEGAEQFRIDVAQNPNDTE 207 (233)
Q Consensus 176 ~~rG~al~~lGryeeAi~~f~kAL~lnP~d~e 207 (233)
..+|-.+...|++++|+..|-+|+.+-|+-.+
T Consensus 21 V~~GE~L~~~g~~~~~~~hf~nAl~Vc~qP~~ 52 (73)
T 3ax2_A 21 IQLGEELLAQGDYEKGVDHLTNAIAVCGQPQQ 52 (73)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHcCCHHH
Confidence 35899999999999999999999999987554
No 269
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=44.20 E-value=20 Score=27.41 Aligned_cols=24 Identities=17% Similarity=0.206 Sum_probs=20.8
Q ss_pred hhhHHHHHHcCCcHHHHHHHHHHH
Q 026773 176 LKKLIRVSHFNRFEEGAEQFRIDV 199 (233)
Q Consensus 176 ~~rG~al~~lGryeeAi~~f~kAL 199 (233)
-.|+..+...|+|+|||++..+|.
T Consensus 19 ~RrAe~ll~~gkydeAIech~kAa 42 (97)
T 2crb_A 19 SRRADRLLAAGKYEEAISCHRKAT 42 (97)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hhHHHHHHhcCCHHHHHHHHHHHH
Confidence 358999999999999999888765
No 270
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}
Probab=43.43 E-value=21 Score=25.96 Aligned_cols=28 Identities=4% Similarity=0.068 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 026773 126 VAIRRGMLLFRQGDVVGSVAEFDKAIEL 153 (233)
Q Consensus 126 Ay~~RG~a~~~lGdyeeAIadfdkAIeL 153 (233)
-...+|.-+...|+|+.|+..|+.+++.
T Consensus 14 e~~k~ARe~Al~GnYdta~~yY~g~~~q 41 (78)
T 2rpa_A 14 ENVKLAREYALLGNYDSAMVYYQGVLDQ 41 (78)
T ss_dssp HHHHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcChHHHHHHHHHHHHH
Confidence 3467888899999999999999999875
No 271
>2cwy_A Hypothetical protein TTHA0068; structural genomics, conserved hypothetical protein, NPPSFA; 1.85A {Thermus thermophilus} SCOP: a.246.2.1 PDB: 2cxd_A
Probab=42.42 E-value=57 Score=24.00 Aligned_cols=65 Identities=14% Similarity=0.091 Sum_probs=48.0
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHHHcCCcHHHHHHHHHHHH-cC
Q 026773 128 IRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSHFNRFEEGAEQFRIDVA-QN 202 (233)
Q Consensus 128 ~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~lGryeeAi~~f~kAL~-ln 202 (233)
+..|..++..|+|=+|-+.++..-.-.|+.. ..+|+ .-|-+--|..+...|+. |...+.+++. +.
T Consensus 5 ~~~~~~lfn~g~~~eaHEvlE~~W~~~~~~~-----~~~~q---GLIq~Ava~~h~~~gn~--a~~ll~~a~~~L~ 70 (94)
T 2cwy_A 5 WEEVLGLWRAGRYYEVHEVLEPYWLKATGEE-----RRLLQ---GVILLAAALHQRRLGRP--GLRNLRKAEARLE 70 (94)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCHHH-----HHHHH---HHHHHHHHHHHHHTTCC--CHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCChHHHHHHHHHHHhhCCCch-----HHHHH---HHHHHHHHHHHHHcCcH--HHHHHHHHHHHHH
Confidence 4678999999999999999999999886532 45555 11223345556667888 9999999987 44
No 272
>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}
Probab=42.16 E-value=14 Score=26.88 Aligned_cols=28 Identities=11% Similarity=0.173 Sum_probs=14.8
Q ss_pred cHHHHHHHHHHHHcCCCCHHHHHHHHHH
Q 026773 188 FEEGAEQFRIDVAQNPNDTEESIWCFLC 215 (233)
Q Consensus 188 yeeAi~~f~kAL~lnP~d~e~~~~~~l~ 215 (233)
|.+|++.|..+++..|+....-..+.-+
T Consensus 42 Y~~aie~l~~alk~e~d~~~k~~ir~K~ 69 (83)
T 2w2u_A 42 YKKAIEVLAQLVSLYRDGSTAAIYEQMI 69 (83)
T ss_dssp HHHHHHHHHHHHHHSTTSSTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 3456666666666666554333333333
No 273
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=42.10 E-value=42 Score=32.64 Aligned_cols=55 Identities=13% Similarity=-0.020 Sum_probs=40.9
Q ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHHHcCCcHHHHHHHHHHHH
Q 026773 131 GMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSHFNRFEEGAEQFRIDVA 200 (233)
Q Consensus 131 G~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~lGryeeAi~~f~kAL~ 200 (233)
|.+ .+.||+++|...|++.-.-.+..+ .+.+|. |.++..+|+.++|...|.++.+
T Consensus 293 r~A-lr~~d~~~a~~~~~~l~~~~~~~~----r~~YW~----------~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 293 RMA-LGTGDRRGLNTWLARLPMEAKEKD----EWRYWQ----------ADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHH-HHHTCHHHHHHHHHHSCTTGGGSH----HHHHHH----------HHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHH-HHCCCHHHHHHHHHHccccccccH----hHHHHH----------HHHHHHcCCHHHHHHHHHHHhc
Confidence 444 467999999999976544222222 356774 8899999999999999998765
No 274
>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*
Probab=41.88 E-value=16 Score=26.40 Aligned_cols=50 Identities=12% Similarity=0.077 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHHHcCCcHHHHHHHHHHHHcCCCCHHHHHHH
Q 026773 141 VGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSHFNRFEEGAEQFRIDVAQNPNDTEESIWC 212 (233)
Q Consensus 141 eeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~lGryeeAi~~f~kAL~lnP~d~e~~~~~ 212 (233)
+.|++...+|++.|-.-- + . -++.+ |.+|++.|..+++..|+....-..+
T Consensus 9 ~~Ai~lv~~Ave~D~~g~------y--~---------eAl~l-----Y~~aie~l~~~lk~e~d~~~k~~ir 58 (83)
T 2v6y_A 9 DMARKYAILAVKADKEGK------V--E---------DAITY-----YKKAIEVLSQIIVLYPESVARTAYE 58 (83)
T ss_dssp HHHHHHHHHHHHHHHTTC------H--H---------HHHHH-----HHHHHHHHHHHHHHCTTCTTHHHHH
T ss_pred HHHHHHHHHHHHHHHhcc------H--H---------HHHHH-----HHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 477777888877764221 1 1 23333 4567777777777777655333333
No 275
>3lew_A SUSD-like carbohydrate binding protein; structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE 1PE 2PE; 1.70A {Bacteroides vulgatus}
Probab=38.68 E-value=60 Score=30.05 Aligned_cols=58 Identities=14% Similarity=0.104 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHHHcCCcHHHHHHHHHHHHc
Q 026773 141 VGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSHFNRFEEGAEQFRIDVAQ 201 (233)
Q Consensus 141 eeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~lGryeeAi~~f~kAL~l 201 (233)
+.-++|++.|+++=|..... .....+...-|+.-++.+++.+|+|++|++..+++|..
T Consensus 175 ~~I~~DL~~A~~~Lp~~~~~---~~~gr~tk~aA~allArvyL~~~~~~~A~~~a~~vi~~ 232 (495)
T 3lew_A 175 AQSINDLEEALELIPETYVR---DAKHKIDNEVVLGILSRACLYARQWEKAKTYSDKLLAK 232 (495)
T ss_dssp HHHHHHHHHHHHHSCTTCCC---SSTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcccccCc---ccCCcccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 45788999999987754210 00111122335556899999999999999999999875
No 276
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=38.66 E-value=97 Score=25.65 Aligned_cols=59 Identities=15% Similarity=0.044 Sum_probs=45.6
Q ss_pred chhHHHhccCcchHHHHHHHHhcccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Q 026773 94 RAPTFTRRLFIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELD 154 (233)
Q Consensus 94 ~~~~~~r~~~~~~a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLd 154 (233)
+...+..++-..+-+.++..++ ..+|-+|+.....|.+|-+.|+-.+|-+...+|-+-.
T Consensus 97 ALd~lv~~~KkDqLdki~~~~l--~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG 155 (172)
T 1wy6_A 97 ALDILVIQGKRDKLEEIGREIL--KNNEVSASILVAIANALRRVGDERDATTLLIEACKKG 155 (172)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHC----CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhccHhHHHHHHHHHh--ccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhh
Confidence 4445555555666777777766 5677789999999999999999999999999987654
No 277
>1wfd_A Hypothetical protein 1500032H18; MIT domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Mus musculus} SCOP: a.7.14.1
Probab=38.28 E-value=21 Score=26.26 Aligned_cols=59 Identities=15% Similarity=0.293 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHHHcCCcHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHc
Q 026773 140 VVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSHFNRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQL 219 (233)
Q Consensus 140 yeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~lGryeeAi~~f~kAL~lnP~d~e~~~~~~l~~a~L 219 (233)
.+.|+....+|++.|-.-- | . -++.+ |.+|++.|..+++..|+....-..+.-|...+
T Consensus 12 l~~Ai~lv~~Ave~D~~g~------y--~---------eAl~~-----Y~~Aie~l~~alk~e~~~~~k~~l~~K~~eYl 69 (93)
T 1wfd_A 12 STAAVAVLKRAVELDAESR------Y--Q---------QALVC-----YQEGIDMLLQVLKGTKESSKRCVLRTKISGYM 69 (93)
T ss_dssp HHHHHHHHHHHHHHHHTTC------H--H---------HHHHH-----HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCC------H--H---------HHHHH-----HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Confidence 3567777777777764321 1 1 22222 45667777777777776554444554454444
Q ss_pred C
Q 026773 220 Y 220 (233)
Q Consensus 220 g 220 (233)
.
T Consensus 70 ~ 70 (93)
T 1wfd_A 70 D 70 (93)
T ss_dssp H
T ss_pred H
Confidence 3
No 278
>3snx_A SUSD homolog, putative SUSD-like carbohydrate binding protein; alpha-alpha superhelix, structural genomics; HET: MSE; 1.88A {Bacteroides thetaiotaomicron}
Probab=36.76 E-value=56 Score=30.10 Aligned_cols=61 Identities=7% Similarity=-0.119 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHHHcCCcHHHHHHHHHHHHc
Q 026773 140 VVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSHFNRFEEGAEQFRIDVAQ 201 (233)
Q Consensus 140 yeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~lGryeeAi~~f~kAL~l 201 (233)
|+.-++|+++|+++=|.... .+......+...-|+.-++.+++.+|+|++|++..++++.-
T Consensus 160 y~~I~~DL~~A~~~L~~~~~-~~~~~~gr~tk~aA~aLlARvyL~~~~~~~A~~~a~~vi~~ 220 (460)
T 3snx_A 160 YQQIFDDLNLAQDYLTNYVR-KGDGQKFKPNTDVVNGLMARAYLLTGQWGEAAKAAEAARKG 220 (460)
T ss_dssp HHHHHHHHHHHHHHTTTCCC-CSGGGTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHHHhcccccC-CccccCcccCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 35578899999987664321 00000111222335566899999999999999999999864
No 279
>4a5x_A MITD1, MIT domain-containing protein 1; protein transport, ESCRT, cytokinesis, midbody; HET: P15; 1.91A {Homo sapiens}
Probab=36.14 E-value=32 Score=24.97 Aligned_cols=43 Identities=5% Similarity=0.050 Sum_probs=20.3
Q ss_pred hHHHHHHcCCcHHHHHHHH-------HHHHcCCCCHHHHHHHHHHHHHcC
Q 026773 178 KLIRVSHFNRFEEGAEQFR-------IDVAQNPNDTEESIWCFLCEAQLY 220 (233)
Q Consensus 178 rG~al~~lGryeeAi~~f~-------kAL~lnP~d~e~~~~~~l~~a~Lg 220 (233)
+++-.-..|+|++|+..|. .+++..|+....-..+..|...+.
T Consensus 22 ~Ave~D~~g~y~eAl~lY~~Aie~ll~alk~e~d~~~k~~lr~K~~eYl~ 71 (86)
T 4a5x_A 22 RAVELDSESRYPQALVCYQEGIDLLLQVLKGTKDNTKRCNLREKISKYMD 71 (86)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHH
Confidence 3444444455555555555 455556654333344444444443
No 280
>2v6x_A Vacuolar protein sorting-associated protein 4; protein transport, vacuole, endosome, transport, ESCRT-III, VPS2, VPS4, SKD1, VPS4B, VPS4A; 1.98A {Saccharomyces cerevisiae}
Probab=34.78 E-value=58 Score=23.09 Aligned_cols=32 Identities=9% Similarity=0.074 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcC
Q 026773 189 EEGAEQFRIDVAQNPNDTEESIWCFLCEAQLY 220 (233)
Q Consensus 189 eeAi~~f~kAL~lnP~d~e~~~~~~l~~a~Lg 220 (233)
.+|++.|-.+++..|+....-..+..|...+.
T Consensus 37 ~~aie~l~~a~k~e~~~~~k~~l~~k~~eYl~ 68 (85)
T 2v6x_A 37 YNGLDYLMLALKYEKNPKSKDLIRAKFTEYLN 68 (85)
T ss_dssp HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHH
Confidence 34555555555556654443344544444433
No 281
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=33.96 E-value=55 Score=31.55 Aligned_cols=73 Identities=8% Similarity=0.007 Sum_probs=52.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHHHcCCcHHHHHHHHHHHHcCCC
Q 026773 125 VVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSHFNRFEEGAEQFRIDVAQNPN 204 (233)
Q Consensus 125 ~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~lGryeeAi~~f~kAL~lnP~ 204 (233)
..+..+=..|...+.|++|....+|+. -|.... .. ...+...+..|.++...++|.+|.+.+..|++.-|.
T Consensus 232 ~l~nllLRnYL~~~~y~qA~~lvsk~~--fP~~~~----sn---~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap~ 302 (523)
T 4b4t_S 232 MLINLILRDFLNNGEVDSASDFISKLE--YPHTDV----SS---SLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAPH 302 (523)
T ss_dssp HHHHHHHHHHHHSSCSTTHHHHHHHHC--SCTTTS----CH---HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCSC
T ss_pred HHHHHHHHHHHccCcHHHHHHHHhcCc--CCcccC----CH---HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCc
Confidence 344444456677899999999999996 443310 00 011233445899999999999999999999998886
Q ss_pred CH
Q 026773 205 DT 206 (233)
Q Consensus 205 d~ 206 (233)
+.
T Consensus 303 ~~ 304 (523)
T 4b4t_S 303 NS 304 (523)
T ss_dssp SS
T ss_pred ch
Confidence 53
No 282
>3qnk_A Putative lipoprotein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG, protein structure initiative; 2.70A {Bacteroides fragilis}
Probab=33.87 E-value=78 Score=29.35 Aligned_cols=75 Identities=16% Similarity=0.006 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHHHc----C------------------------CHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhh
Q 026773 124 AVVAIRRGMLLFRQ----G------------------------DVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGII 175 (233)
Q Consensus 124 a~Ay~~RG~a~~~l----G------------------------dyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~ 175 (233)
++|++.||..|+.+ | =|+.-++|++.|++.=|.... ......+...-|.
T Consensus 109 aea~flRA~~yf~L~~~~G~VP~~~~~~~~~~~~~~~r~~~~ev~~~I~~dL~~A~~~Lp~~~~---~~~~gr~tk~aA~ 185 (517)
T 3qnk_A 109 GEVHFLRAMFYFEMVKRYGGVILLDKVLTMEDNWEIPRSSEKECYDFILEDLKKATEMLPASYG---SREKGRATKGAAY 185 (517)
T ss_dssp HHHHHHHHHHHHHHHHHHSSCCCCSSCCCTTSCCCCCCCCHHHHHHHHHHHHHHHHHHSCSCCC---STTTTSCCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCceeeCCcCCccccccCCCCCHHHHHHHHHHHHHHHHHhCccccC---CcccCcccHHHHH
Confidence 67777788777764 1 135578899999987775210 0111111223355
Q ss_pred hhhHHHHHHcCCcHHHHHHHHHHHHc
Q 026773 176 LKKLIRVSHFNRFEEGAEQFRIDVAQ 201 (233)
Q Consensus 176 ~~rG~al~~lGryeeAi~~f~kAL~l 201 (233)
.-++.+++..++|++|++..+++|..
T Consensus 186 allarv~L~~~~~~~A~~~a~~vi~~ 211 (517)
T 3qnk_A 186 ALKSRVELYDKRYEDVIKSCAEVYKL 211 (517)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 66899999999999999999999864
No 283
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=33.54 E-value=1.3e+02 Score=24.38 Aligned_cols=56 Identities=16% Similarity=0.146 Sum_probs=43.8
Q ss_pred hhHHHHHHcCCcHHHHHHHHHHHHcCCCC-HHHHHHHHHHH--------HHcCCHHHHHHHHHhh
Q 026773 177 KKLIRVSHFNRFEEGAEQFRIDVAQNPND-TEESIWCFLCE--------AQLYGVDEARNRFLEA 232 (233)
Q Consensus 177 ~rG~al~~lGryeeAi~~f~kAL~lnP~d-~e~~~~~~l~~--------a~Lg~~dEA~~~~l~~ 232 (233)
..|+.++..|+|=+|-+.++..-.-.+.. .+..+|.++.. .+.|+.+.|...+.++
T Consensus 37 ~~~i~lFn~g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~A 101 (161)
T 2ijq_A 37 VHGVRLYNSGEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTS 101 (161)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred HHHHHHHhCCCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 37999999999999999999998877654 24556666555 3578998888877664
No 284
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=33.51 E-value=1.1e+02 Score=28.08 Aligned_cols=111 Identities=10% Similarity=-0.009 Sum_probs=68.2
Q ss_pred CcchHHHHHHHHhcc--cCCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC-CCCccchhhhhhhhhhhhhh
Q 026773 103 FIPSVSGIWDALTGG--NNNS--REAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQ-KISGKGAYRFTISIVGIILK 177 (233)
Q Consensus 103 ~~~~a~~i~~~~i~~--~l~P--~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~-~~~~~~~y~~~~~~~~a~~~ 177 (233)
-+.++..+...+... ++|. ..-+++...-.++..+|++.++-+.+++|....-.- .. +... ..+-.-
T Consensus 114 ~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~----p~i~----a~i~~~ 185 (394)
T 3txn_A 114 LYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCP----PKVQ----GALDLQ 185 (394)
T ss_dssp CHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCC----HHHH----HHHHHH
T ss_pred hHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCC----HHHH----HHHHHH
Confidence 344555555555421 2222 234778888889999999999999999998775211 10 1111 122234
Q ss_pred hHHHHH-HcCCcHHHHHHHHHHHH-cCCC-CH---HHHHHHHHHHHHcCC
Q 026773 178 KLIRVS-HFNRFEEGAEQFRIDVA-QNPN-DT---EESIWCFLCEAQLYG 221 (233)
Q Consensus 178 rG~al~-~lGryeeAi~~f~kAL~-lnP~-d~---e~~~~~~l~~a~Lg~ 221 (233)
-|+.+. ..++|++|.+.|-.+++ .+.- ++ ....+..+|-...++
T Consensus 186 ~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~~~~~~~~~lkYlvL~aLl~~~ 235 (394)
T 3txn_A 186 SGILHAADERDFKTAFSYFYEAFEGFDSVDSVKALTSLKYMLLCKIMLGQ 235 (394)
T ss_dssp HHHHHHHTTSCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred hhHHHHHhccCHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHcCC
Confidence 688888 89999999999999874 2221 22 223445555555555
No 285
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=33.16 E-value=48 Score=30.08 Aligned_cols=60 Identities=0% Similarity=-0.125 Sum_probs=40.7
Q ss_pred hhhhhhHHHHHHcCCcHHHHHHHHHHHHcCCC--CH-HHHHHHHHHHHHcCCHHHHHHHHHhh
Q 026773 173 GIILKKLIRVSHFNRFEEGAEQFRIDVAQNPN--DT-EESIWCFLCEAQLYGVDEARNRFLEA 232 (233)
Q Consensus 173 ~a~~~rG~al~~lGryeeAi~~f~kAL~lnP~--d~-e~~~~~~l~~a~Lg~~dEA~~~~l~~ 232 (233)
++...+|..++..|++++|++.|.++...... +. +.++..-.+....+++..+...+.++
T Consensus 132 ~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka 194 (429)
T 4b4t_R 132 QAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAV 194 (429)
T ss_dssp SCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 34567999999999999999999998875433 22 22222222333567888887766554
No 286
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=32.09 E-value=43 Score=26.16 Aligned_cols=47 Identities=17% Similarity=0.176 Sum_probs=36.3
Q ss_pred hHHHHHHcCCcHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 026773 178 KLIRVSHFNRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQLYGVDEARNRF 229 (233)
Q Consensus 178 rG~al~~lGryeeAi~~f~kAL~lnP~d~e~~~~~~l~~a~Lg~~dEA~~~~ 229 (233)
|-..+...|+|++|....+... .|+.--|.++|..++|--+++..++
T Consensus 46 R~sSLmNrG~Yq~Al~l~~~~c-----~pdlepw~ALce~rlGl~s~le~rL 92 (116)
T 2p58_C 46 RLSSLMNRGDYASALQQGNKLA-----YPDLEPWLALCEYRLGLGSALESRL 92 (116)
T ss_dssp HHHHHHHTTCHHHHHHHHTTSC-----CGGGHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHcchhHHHHHHhcCCCC-----CchHHHHHHHHHHhcccHHHHHHHH
Confidence 7888999999999998765432 3444457888999999888877766
No 287
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=31.37 E-value=1.1e+02 Score=32.23 Aligned_cols=57 Identities=7% Similarity=-0.096 Sum_probs=43.2
Q ss_pred hhhhHHHHHHcCCcHHHHHHHHHHHH-----cCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhh
Q 026773 175 ILKKLIRVSHFNRFEEGAEQFRIDVA-----QNPNDTEESIWCFLCEAQLYGVDEARNRFLEA 232 (233)
Q Consensus 175 ~~~rG~al~~lGryeeAi~~f~kAL~-----lnP~d~e~~~~~~l~~a~Lg~~dEA~~~~l~~ 232 (233)
|+-+=..+.+.|+.++|.+.|+..-+ ..|+ ...|.-+-.++++.|+.++|...|.+-
T Consensus 130 ynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~Pd-vvTYNtLI~Glck~G~~~eA~~Lf~eM 191 (1134)
T 3spa_A 130 LLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLT-LDMYNAVMLGWARQGAFKELVYVLFMV 191 (1134)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCC-HHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCC-HhHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 44566678899999999999977543 4665 444444556788999999999998763
No 288
>3t5x_A PCI domain-containing protein 2; PCI, mRNA nuclear export, transcription; 2.12A {Homo sapiens}
Probab=30.65 E-value=82 Score=25.93 Aligned_cols=32 Identities=6% Similarity=0.044 Sum_probs=28.4
Q ss_pred hhhHHHHHHcCCcHHHHHHHHHHHHcCCCCHH
Q 026773 176 LKKLIRVSHFNRFEEGAEQFRIDVAQNPNDTE 207 (233)
Q Consensus 176 ~~rG~al~~lGryeeAi~~f~kAL~lnP~d~e 207 (233)
+-.|..+...++|.+|.+++..|++.-|.+..
T Consensus 18 YYlGr~~~~~~~y~~A~~~L~~A~~~~~~~~~ 49 (203)
T 3t5x_A 18 YYVGRKAMFDSDFKQAEEYLSFAFEHCHRSSQ 49 (203)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSCTTCH
T ss_pred HHHHHHHHHHhCHHHHHHHHHHHHHHCCHhHH
Confidence 34899999999999999999999999887653
No 289
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=30.34 E-value=3.1e+02 Score=24.86 Aligned_cols=101 Identities=10% Similarity=-0.032 Sum_probs=67.5
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh-hCCCCCCCccchhhhhhhhhhhhhhhHHHHHHcCCcHHHHHHHHHHH--
Q 026773 123 EAVVAIRRGMLLFRQGDVVGSVAEFDKAIE-LDPRQKISGKGAYRFTISIVGIILKKLIRVSHFNRFEEGAEQFRIDV-- 199 (233)
Q Consensus 123 ~a~Ay~~RG~a~~~lGdyeeAIadfdkAIe-LdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~lGryeeAi~~f~kAL-- 199 (233)
.+.....++.++...|++.+|......... .--... +. -.+++|+.--..+...+++..|....+++-
T Consensus 136 rarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~----~~-----~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~ 206 (445)
T 4b4t_P 136 RARVTKDLVEIKKEEGKIDEAADILCELQVETYGSME----MS-----EKIQFILEQMELSILKGDYSQATVLSRKILKK 206 (445)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSC----HH-----HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhccc----HH-----HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 355567889999999999999988877542 111111 01 135677778889999999999999998863
Q ss_pred -HcCCCCHHHHH----HHHHHHHHcCCHHHHHHHHHhh
Q 026773 200 -AQNPNDTEESI----WCFLCEAQLYGVDEARNRFLEA 232 (233)
Q Consensus 200 -~lnP~d~e~~~----~~~l~~a~Lg~~dEA~~~~l~~ 232 (233)
.-++.+++... ..+......+++.+|-.+|.++
T Consensus 207 ~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~ 244 (445)
T 4b4t_P 207 TFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEI 244 (445)
T ss_dssp HHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred hcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 22344444322 2233445678898888887754
No 290
>3hdx_A SUSD homolog, SUSD superfamily protein; NP_809182.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides thetaiotaomicron vpi-5482}
Probab=29.69 E-value=98 Score=28.31 Aligned_cols=78 Identities=17% Similarity=0.062 Sum_probs=52.5
Q ss_pred HHHHHHHHHHHHHc----C------------------------CHHHHHHHHHHHHhhCCCCCCCccc------hhhh--
Q 026773 124 AVVAIRRGMLLFRQ----G------------------------DVVGSVAEFDKAIELDPRQKISGKG------AYRF-- 167 (233)
Q Consensus 124 a~Ay~~RG~a~~~l----G------------------------dyeeAIadfdkAIeLdP~~~~~~~~------~y~~-- 167 (233)
++|++.||.+|+.+ | =|+.-++|++.|+++=|.......+ ...|
T Consensus 112 gEa~flRA~~yf~L~~~fG~VP~~~~~~~~~~~~~~~r~~~~evy~~I~~DL~~A~~~Lp~~~~~~~~~~~~~~~~~~~~ 191 (478)
T 3hdx_A 112 AQVRALRAFAYFYMVRIWGDVPLVTYSYDNGTFPSMPRTDAQTVLSYAKAELLTAIEDLPYQYGTQTNLYYGSYGAQWQG 191 (478)
T ss_dssp HHHHHHHHHHHHHHHHHHSSBCCCCSCCCTTCCCCCCCBCHHHHHHHHHHHHHHHHHHCCSSCCCSSSCBTTBCGGGGTT
T ss_pred HHHHHHHHHHHHHHHHHhCCeeeeccCCCcccccCCCCCCHHHHHHHHHHHHHHHHHhCcccccCCcccccccccccccc
Confidence 78888888888764 1 1456788999999976653210000 0001
Q ss_pred -hhhhhhhhhhhHHHHHHcCCcHHHHHHHHHHHHc
Q 026773 168 -TISIVGIILKKLIRVSHFNRFEEGAEQFRIDVAQ 201 (233)
Q Consensus 168 -~~~~~~a~~~rG~al~~lGryeeAi~~f~kAL~l 201 (233)
++...-|..-++.++...|+|++|++..+++|..
T Consensus 192 ~r~tk~aA~allarvyL~~~~~~~A~~~a~~vi~~ 226 (478)
T 3hdx_A 192 KLFNKLSAYSVLAHICAWQGNYAEAETYSAFIIDH 226 (478)
T ss_dssp TSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhC
Confidence 2223345667889999999999999999999864
No 291
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=29.42 E-value=77 Score=32.04 Aligned_cols=60 Identities=10% Similarity=-0.007 Sum_probs=41.8
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHHHcCCcHHHHHHHHHHH
Q 026773 120 NSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSHFNRFEEGAEQFRIDV 199 (233)
Q Consensus 120 ~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~lGryeeAi~~f~kAL 199 (233)
.+++.... ....+...|.++-|.+ -+..-|.++ ...|. +|.++...|++++|.++|.+|-
T Consensus 808 ~~~~~~~~--l~~~L~~~~~~~~a~e----L~~~~~~t~-----~~~yv---------~gr~~L~~ge~~~A~~~F~kAA 867 (950)
T 4gq2_M 808 TENDLVTE--LVEKLFLFKQYNACMQ----LIGWLNSDP-----IAVYL---------KALIYLKSKEAVKAVRCFKTTS 867 (950)
T ss_dssp SSCCHHHH--HHHHHHHTTCHHHHHH----HGGGCCSSH-----HHHHH---------HHHHHHHTTCHHHHHHHHHTCC
T ss_pred CCCccHHH--HHHHHHHhcHHHHHHH----HHhhcCCCh-----HHHHH---------HHHHHHHcCCHHHHHHHHHHHh
Confidence 34444433 5567778888875432 445666665 33344 8999999999999999998854
No 292
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=28.37 E-value=1.1e+02 Score=25.07 Aligned_cols=80 Identities=10% Similarity=0.084 Sum_probs=53.6
Q ss_pred HHHcCCHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHHHcCCcHHHHHHHHHHHHcC--------CCC
Q 026773 134 LFRQGDVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSHFNRFEEGAEQFRIDVAQN--------PND 205 (233)
Q Consensus 134 ~~~lGdyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~lGryeeAi~~f~kAL~ln--------P~d 205 (233)
-...|+++.|.+..++. + + ...|. .+|..-...|+++-|..+|.++=..+ -.|
T Consensus 15 AL~lg~l~~A~e~a~~l---~--~------~~~Wk--------~Lg~~AL~~gn~~lAe~cy~~~~D~~~L~~Ly~~tg~ 75 (177)
T 3mkq_B 15 ALEYGNLDAALDEAKKL---N--D------SITWE--------RLIQEALAQGNASLAEMIYQTQHSFDKLSFLYLVTGD 75 (177)
T ss_dssp HHHTTCHHHHHHHHHHH---C--C------HHHHH--------HHHHHHHHTTCHHHHHHHHHHTTCHHHHHHHHHHHTC
T ss_pred HHhcCCHHHHHHHHHHh---C--C------HHHHH--------HHHHHHHHcCChHHHHHHHHHhCCHHHHHHHHHHhCC
Confidence 46789999999886543 2 2 24565 69999999999999999998731111 111
Q ss_pred HHHH-------------HHHHHHHHHcCCHHHHHHHHHhh
Q 026773 206 TEES-------------IWCFLCEAQLYGVDEARNRFLEA 232 (233)
Q Consensus 206 ~e~~-------------~~~~l~~a~Lg~~dEA~~~~l~~ 232 (233)
.+.. ...+.|...+|+++++.+.+.++
T Consensus 76 ~e~L~kla~iA~~~g~~n~af~~~l~lGdv~~~i~lL~~~ 115 (177)
T 3mkq_B 76 VNKLSKMQNIAQTREDFGSMLLNTFYNNSTKERSSIFAEG 115 (177)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHCccHHHHHHHHHHcCCHHHHHHHHHHC
Confidence 1111 11245566889999999888764
No 293
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=26.65 E-value=41 Score=26.27 Aligned_cols=47 Identities=17% Similarity=0.189 Sum_probs=35.8
Q ss_pred hHHHHHHcCCcHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 026773 178 KLIRVSHFNRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQLYGVDEARNRF 229 (233)
Q Consensus 178 rG~al~~lGryeeAi~~f~kAL~lnP~d~e~~~~~~l~~a~Lg~~dEA~~~~ 229 (233)
|-..+...|+|++|....+... .|+.--|.++|..++|--+++..++
T Consensus 45 R~sSLmNrG~Yq~Al~l~~~~c-----~pdlepw~ALce~rlGl~s~le~rL 91 (115)
T 2uwj_G 45 RISSLANQGRYQEALAFAHGNP-----WPALEPWFALCEWHLGLGAALDRRL 91 (115)
T ss_dssp HHHHHHHTTCHHHHHGGGTTCC-----CGGGHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHcchhHHHHHHhcCCCC-----CchHHHHHHHHHHhcccHHHHHHHH
Confidence 7888999999999987664322 3444458888999999888877766
No 294
>2cpt_A SKD1 protein, vacuolar sorting protein 4B; MIT, helix bundle, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: a.7.14.1
Probab=26.29 E-value=51 Score=25.30 Aligned_cols=33 Identities=12% Similarity=0.144 Sum_probs=17.0
Q ss_pred cHHHHHHHHHHHHcCCCCHH-HHHHHHHHHHHcC
Q 026773 188 FEEGAEQFRIDVAQNPNDTE-ESIWCFLCEAQLY 220 (233)
Q Consensus 188 yeeAi~~f~kAL~lnP~d~e-~~~~~~l~~a~Lg 220 (233)
|.+|++.|-.+++..+.++. .-.++..|...+.
T Consensus 41 Y~~Aie~l~~alk~e~~~~~~k~~lr~K~~eYl~ 74 (117)
T 2cpt_A 41 YQHAVQYFLHVVKYEAQGDKAKQSIRAKCTEYLD 74 (117)
T ss_dssp HHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHH
Confidence 34555555566666655554 3344544544443
No 295
>3jq1_A SUSD superfamily protein; structural genomic center for structural genomics, JCSG, protein structure INI PSI-2, RAGB; HET: MSE; 1.55A {Bacteroides vulgatus atcc 8482}
Probab=25.00 E-value=76 Score=29.24 Aligned_cols=55 Identities=9% Similarity=-0.067 Sum_probs=38.4
Q ss_pred HHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhhhhhHHHHHHcCCcHHHHHHHHHHHH
Q 026773 140 VVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGIILKKLIRVSHFNRFEEGAEQFRIDVA 200 (233)
Q Consensus 140 yeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~~~rG~al~~lGryeeAi~~f~kAL~ 200 (233)
|+.-++|++.|+++=|.....| .....-|+.-++.+++..++|++|++..++++.
T Consensus 154 y~~I~~DL~~A~~~Lp~~~~~g------r~tk~aA~allarvyL~~~~~~~A~~~a~~vi~ 208 (481)
T 3jq1_A 154 WAQAKEDLKTAASLLPITNKIG------KPTQGAAYAALGKIYVYEENWQEAINVLEPLTQ 208 (481)
T ss_dssp HHHHHHHHHHHHHHSCSSCSTT------SCCHHHHHHHHHHHHHHTTCHHHHHHHHGGGGS
T ss_pred HHHHHHHHHHHHHhCCCCCCCC------cccHHHHHHHHHHHHHHHhHHHHHHHHHHHHHh
Confidence 4567889999998777532101 111122445688999999999999999998874
No 296
>2dl1_A Spartin; SPG20, MIT, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=24.93 E-value=91 Score=24.33 Aligned_cols=33 Identities=12% Similarity=0.192 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHH-------HHHHHhhCCC
Q 026773 124 AVVAIRRGMLLFRQGDVVGSVAE-------FDKAIELDPR 156 (233)
Q Consensus 124 a~Ay~~RG~a~~~lGdyeeAIad-------fdkAIeLdP~ 156 (233)
+-.|+++|...-..|+-++|++. ++++|.+..+
T Consensus 22 AF~~Is~AL~~DE~g~k~~Al~lYk~GI~eLe~Gl~I~~~ 61 (116)
T 2dl1_A 22 AFLFVNKGLNTDELGQKEEAKNYYKQGIGHLLRGISISSK 61 (116)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSCCC
T ss_pred HHHHHHHHhhhhhcCCHHHHHHHHHHHHHHHHHhcccccc
Confidence 34566777777777776666555 4556666664
No 297
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=24.58 E-value=2.5e+02 Score=23.63 Aligned_cols=20 Identities=25% Similarity=0.162 Sum_probs=17.4
Q ss_pred HHHHHcCCHHHHHHHHHhhC
Q 026773 214 LCEAQLYGVDEARNRFLEAR 233 (233)
Q Consensus 214 l~~a~Lg~~dEA~~~~l~~~ 233 (233)
..+.++|+-++|+..|+++|
T Consensus 99 ~~L~rLg~~~~A~~lfL~~r 118 (235)
T 2d2s_A 99 ENMIKLGLPEQALDLFLQNR 118 (235)
T ss_dssp HHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHCCChhHHHHHHHHHH
Confidence 45679999999999999876
No 298
>2yhe_A SEC-alkyl sulfatase; hydrolase, inversion, metallo-beta-lactamase fold; 2.70A {Pseudomonas SP}
Probab=30.14 E-value=16 Score=35.95 Aligned_cols=53 Identities=13% Similarity=0.013 Sum_probs=45.5
Q ss_pred hhhhhhhHHHHHHcCCcHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHH
Q 026773 172 VGIILKKLIRVSHFNRFEEGAEQFRIDVAQNPNDTEESIWCFLCEAQLYGVDE 224 (233)
Q Consensus 172 ~~a~~~rG~al~~lGryeeAi~~f~kAL~lnP~d~e~~~~~~l~~a~Lg~~dE 224 (233)
.+..+.++...+..|+|.-|.+..+.++..+|+|.++...++-++.++|--.|
T Consensus 461 ~~~~~~~a~~~~~~g~~~wa~~l~~~~~~a~p~~~~ar~l~a~~~~~l~~~~~ 513 (668)
T 2yhe_A 461 ADAVLKQMRAAIDKGDYRWAVQLGNHLVFADPANKDARALQADAMEQLGYQTE 513 (668)
Confidence 56778899999999999999999999999999999887777777777774433
No 299
>1om2_A Protein (mitochondrial import receptor subunit TOM20); mitochondrial protein import across outer membrane, receptor for presequences; NMR {Rattus norvegicus} SCOP: a.23.4.1
Probab=23.91 E-value=53 Score=24.73 Aligned_cols=30 Identities=10% Similarity=0.132 Sum_probs=26.9
Q ss_pred hhhHHHHHHcCCcHHHHHHHHHHHHcCCCC
Q 026773 176 LKKLIRVSHFNRFEEGAEQFRIDVAQNPND 205 (233)
Q Consensus 176 ~~rG~al~~lGryeeAi~~f~kAL~lnP~d 205 (233)
..+|-.+...|++++|+..|-+|+.+-|+-
T Consensus 24 V~lGE~L~~~g~~e~av~Hf~nAl~Vc~qP 53 (95)
T 1om2_A 24 IQLGEELLAQGDYEKGVDHLTNAIAVCGQP 53 (95)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHSCH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHcCCH
Confidence 358999999999999999999999998863
No 300
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}
Probab=23.86 E-value=70 Score=23.12 Aligned_cols=26 Identities=8% Similarity=0.106 Sum_probs=22.2
Q ss_pred hhhHHHHHHcCCcHHHHHHHHHHHHc
Q 026773 176 LKKLIRVSHFNRFEEGAEQFRIDVAQ 201 (233)
Q Consensus 176 ~~rG~al~~lGryeeAi~~f~kAL~l 201 (233)
..+|.=+..+|+|+.|+..|+.+++.
T Consensus 16 ~k~ARe~Al~GnYdta~~yY~g~~~q 41 (78)
T 2rpa_A 16 VKLAREYALLGNYDSAMVYYQGVLDQ 41 (78)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcChHHHHHHHHHHHHH
Confidence 35788888899999999999988774
No 301
>3i4g_A SUSD-like carbohydrate binding protein BF1063; structural genomics, center for structural genomics, JCSG; HET: MSE EPE; 1.35A {Bacteroides fragilis nctc 9343}
Probab=22.87 E-value=1.6e+02 Score=27.54 Aligned_cols=77 Identities=16% Similarity=-0.012 Sum_probs=50.4
Q ss_pred HHHHHHHHHHHHHc----C------------------------CHHHHHHHHHHHHhhCCCCCCCccchhhhhhhhhhhh
Q 026773 124 AVVAIRRGMLLFRQ----G------------------------DVVGSVAEFDKAIELDPRQKISGKGAYRFTISIVGII 175 (233)
Q Consensus 124 a~Ay~~RG~a~~~l----G------------------------dyeeAIadfdkAIeLdP~~~~~~~~~y~~~~~~~~a~ 175 (233)
++|++.||..|+.+ | =++.-++|++.|++.=|...... .....++...-|.
T Consensus 123 aEa~flRA~~Yf~L~~~yG~VPl~~~~~~~~~~~~~~r~~~~ev~~~I~~DL~~A~~~Lp~~~~~~-~~~~gr~tk~aA~ 201 (528)
T 3i4g_A 123 AEARFLRATQYFYLASYFKNVPLVENVLTGEEANNVTKTSQADILKWCVTEFTAAAADLPRFSAIP-AGEAGRACKQAAL 201 (528)
T ss_dssp HHHHHHHHHHHHHHHHHTCSBCCCCSCCCHHHHTTCCCBCHHHHHHHHHHHHHHHHHHSCCGGGCC-GGGTTSCCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCcceeCCCCCccccccCCCCCHHHHHHHHHHHHHHHHHhCCccccCC-cccCCcCcHHHHH
Confidence 67788888877764 1 13446788999998777310000 0111112223455
Q ss_pred hhhHHHHHHcCCcHHHHHHHHHHHHc
Q 026773 176 LKKLIRVSHFNRFEEGAEQFRIDVAQ 201 (233)
Q Consensus 176 ~~rG~al~~lGryeeAi~~f~kAL~l 201 (233)
.-++.+++..+++++|++..+++|..
T Consensus 202 allarv~L~~~~~~~A~~~a~~vi~~ 227 (528)
T 3i4g_A 202 AFLGRTCMLQKDWKSGAKAFHDIMEL 227 (528)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHhc
Confidence 66889999999999999999999863
No 302
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=22.80 E-value=2.9e+02 Score=22.04 Aligned_cols=53 Identities=13% Similarity=0.154 Sum_probs=43.8
Q ss_pred CcchHHHHHHHHhcccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Q 026773 103 FIPSVSGIWDALTGGNNNSREAVVAIRRGMLLFRQGDVVGSVAEFDKAIELDP 155 (233)
Q Consensus 103 ~~~~a~~i~~~~i~~~l~P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeLdP 155 (233)
+..+...+|..+..-.+--..+.-|..-+..+-..|++.+|.+.|++.|+-+.
T Consensus 80 ~~~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A 132 (152)
T 4a1g_A 80 YNSDLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQA 132 (152)
T ss_dssp TBSCHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred hcCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Confidence 45566778877764445668899999999999999999999999999999764
No 303
>3lew_A SUSD-like carbohydrate binding protein; structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE 1PE 2PE; 1.70A {Bacteroides vulgatus}
Probab=20.12 E-value=99 Score=28.58 Aligned_cols=33 Identities=12% Similarity=-0.123 Sum_probs=29.4
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Q 026773 121 SREAVVAIRRGMLLFRQGDVVGSVAEFDKAIEL 153 (233)
Q Consensus 121 P~~a~Ay~~RG~a~~~lGdyeeAIadfdkAIeL 153 (233)
++-..|+..++.+++..|+|++|++..+++|..
T Consensus 200 ~tk~aA~allArvyL~~~~~~~A~~~a~~vi~~ 232 (495)
T 3lew_A 200 IDNEVVLGILSRACLYARQWEKAKTYSDKLLAK 232 (495)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 445678999999999999999999999999975
Done!