Query 026774
Match_columns 233
No_of_seqs 150 out of 1333
Neff 8.5
Searched_HMMs 46136
Date Fri Mar 29 12:30:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026774.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026774hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3202 SNARE protein TLG1/Syn 100.0 9.3E-37 2E-41 249.0 26.3 227 1-228 1-234 (235)
2 KOG0809 SNARE protein TLG2/Syn 99.8 1.6E-17 3.4E-22 137.7 20.0 216 7-224 58-297 (305)
3 KOG0810 SNARE protein Syntaxin 99.8 2.8E-17 6E-22 139.6 17.7 208 5-214 35-277 (297)
4 COG5325 t-SNARE complex subuni 99.6 1.8E-14 3.8E-19 118.7 17.2 82 134-215 184-267 (283)
5 KOG0811 SNARE protein PEP12/VA 99.6 1.4E-13 3E-18 115.2 22.7 216 5-223 16-258 (269)
6 KOG0812 SNARE protein SED5/Syn 99.6 3.5E-13 7.6E-18 111.4 21.3 203 7-214 42-297 (311)
7 KOG3385 V-SNARE [Intracellular 99.5 5.6E-14 1.2E-18 101.1 8.4 65 140-204 31-95 (118)
8 PF05739 SNARE: SNARE domain; 99.5 2.1E-13 4.5E-18 90.4 9.3 62 142-203 1-62 (63)
9 PF09177 Syntaxin-6_N: Syntaxi 99.4 7.8E-13 1.7E-17 95.3 7.8 91 6-96 1-97 (97)
10 COG5074 t-SNARE complex subuni 99.3 7.5E-11 1.6E-15 95.0 15.2 193 8-205 23-245 (280)
11 cd00193 t_SNARE Soluble NSF (N 99.2 4.3E-11 9.4E-16 78.1 7.8 59 141-199 2-60 (60)
12 smart00397 t_SNARE Helical reg 99.2 1.6E-10 3.5E-15 76.8 9.2 64 136-199 3-66 (66)
13 KOG1666 V-SNARE [Intracellular 99.0 3.2E-07 6.9E-12 73.5 20.3 187 1-205 1-195 (220)
14 PF09753 Use1: Membrane fusion 98.9 1.7E-06 3.6E-11 72.9 23.1 89 141-233 163-251 (251)
15 KOG3065 SNAP-25 (synaptosome-a 98.8 1.5E-08 3.3E-13 85.2 7.7 62 139-200 212-273 (273)
16 KOG3251 Golgi SNAP receptor co 98.7 4.1E-06 8.9E-11 67.4 19.4 186 10-213 3-198 (213)
17 KOG3208 SNARE protein GS28 [In 98.7 6E-06 1.3E-10 66.5 18.4 214 3-229 2-230 (231)
18 KOG2678 Predicted membrane pro 97.9 0.0002 4.3E-09 57.9 11.7 81 145-225 155-235 (244)
19 KOG0860 Synaptobrevin/VAMP-lik 97.7 0.0011 2.3E-08 48.5 10.5 61 170-230 54-115 (116)
20 KOG3894 SNARE protein Syntaxin 97.6 0.00088 1.9E-08 57.0 10.7 85 140-224 227-311 (316)
21 KOG1666 V-SNARE [Intracellular 97.4 0.018 3.8E-07 46.6 15.7 149 43-205 31-188 (220)
22 PF00957 Synaptobrevin: Synapt 97.4 0.0016 3.5E-08 45.8 8.8 46 145-190 3-48 (89)
23 PF03908 Sec20: Sec20; InterP 97.1 0.023 5E-07 40.2 11.6 60 146-205 9-68 (92)
24 KOG0810 SNARE protein Syntaxin 97.1 0.0057 1.2E-07 52.5 9.8 77 138-216 206-282 (297)
25 PF12352 V-SNARE_C: Snare regi 97.0 0.017 3.8E-07 38.0 10.0 59 144-202 7-65 (66)
26 PF00804 Syntaxin: Syntaxin; 96.9 0.01 2.2E-07 42.2 8.8 90 6-96 3-103 (103)
27 COG5074 t-SNARE complex subuni 96.8 0.028 6.2E-07 46.0 11.1 83 139-224 186-268 (280)
28 KOG0811 SNARE protein PEP12/VA 96.6 0.085 1.8E-06 44.7 13.2 92 129-223 171-262 (269)
29 smart00503 SynN Syntaxin N-ter 95.6 0.29 6.2E-06 35.7 10.6 95 5-102 3-108 (117)
30 KOG3202 SNARE protein TLG1/Syn 95.1 0.65 1.4E-05 38.6 12.1 90 130-224 144-233 (235)
31 cd00179 SynN Syntaxin N-termin 94.1 0.79 1.7E-05 35.0 9.9 95 6-102 2-107 (151)
32 PF10779 XhlA: Haemolysin XhlA 94.0 1 2.2E-05 30.1 9.0 47 163-211 10-56 (71)
33 KOG2678 Predicted membrane pro 93.3 3.1 6.7E-05 34.1 12.0 93 138-233 144-240 (244)
34 PHA02819 hypothetical protein; 93.2 0.21 4.5E-06 33.1 4.3 25 207-231 44-68 (71)
35 PF05478 Prominin: Prominin; 92.9 10 0.00022 37.4 17.4 52 148-201 360-411 (806)
36 PF11166 DUF2951: Protein of u 92.7 2.5 5.4E-05 29.8 11.3 71 142-213 8-78 (98)
37 KOG0809 SNARE protein TLG2/Syn 92.6 6.1 0.00013 33.8 17.9 203 19-226 80-302 (305)
38 PF05478 Prominin: Prominin; 92.3 3.9 8.4E-05 40.4 13.6 61 148-208 353-415 (806)
39 PHA03054 IMV membrane protein; 92.0 0.33 7.3E-06 32.1 4.1 25 207-231 46-70 (72)
40 PHA02844 putative transmembran 91.0 0.99 2.1E-05 30.3 5.5 24 208-231 47-70 (75)
41 PHA02650 hypothetical protein; 90.4 0.58 1.3E-05 31.7 4.1 24 208-231 48-71 (81)
42 COG5325 t-SNARE complex subuni 90.3 5.6 0.00012 33.7 10.7 57 8-65 36-98 (283)
43 PF01519 DUF16: Protein of unk 90.0 3.7 8E-05 29.5 8.1 50 142-191 50-99 (102)
44 PF00957 Synaptobrevin: Synapt 88.3 6.6 0.00014 27.2 10.8 20 181-200 42-61 (89)
45 PF12575 DUF3753: Protein of u 88.3 1.2 2.5E-05 29.9 4.3 21 211-231 50-70 (72)
46 PF07889 DUF1664: Protein of u 87.8 8.4 0.00018 28.9 9.2 58 144-201 67-124 (126)
47 PF09753 Use1: Membrane fusion 87.8 5.9 0.00013 33.2 9.5 63 130-192 155-221 (251)
48 PF05531 NPV_P10: Nucleopolyhe 87.4 7 0.00015 26.5 7.7 58 132-189 5-65 (75)
49 PRK00523 hypothetical protein; 87.1 1.1 2.4E-05 30.0 3.7 25 207-231 3-27 (72)
50 PF03908 Sec20: Sec20; InterP 86.5 9 0.0002 26.8 10.1 14 218-231 77-90 (92)
51 PF06143 Baculo_11_kDa: Baculo 86.4 1.6 3.4E-05 30.3 4.2 39 193-231 19-61 (84)
52 PHA02975 hypothetical protein; 85.7 4 8.6E-05 27.0 5.6 19 213-231 48-66 (69)
53 PHA02849 putative transmembran 85.0 1.6 3.4E-05 29.6 3.6 23 210-232 18-40 (82)
54 PRK10884 SH3 domain-containing 84.7 19 0.00042 29.4 10.6 38 159-196 118-155 (206)
55 PRK11637 AmiB activator; Provi 84.6 31 0.00067 31.3 14.4 40 145-184 191-230 (428)
56 KOG3385 V-SNARE [Intracellular 84.5 7.6 0.00016 28.5 7.2 10 219-228 107-116 (118)
57 PRK01844 hypothetical protein; 83.3 2.2 4.8E-05 28.6 3.7 21 211-231 6-26 (72)
58 PF10779 XhlA: Haemolysin XhlA 83.2 11 0.00024 25.1 8.1 54 163-216 3-58 (71)
59 PF13800 Sigma_reg_N: Sigma fa 83.1 1.2 2.5E-05 31.6 2.6 9 197-205 2-10 (96)
60 PRK11637 AmiB activator; Provi 81.7 41 0.00088 30.5 15.6 48 144-191 204-251 (428)
61 PF06024 DUF912: Nucleopolyhed 81.3 0.7 1.5E-05 33.3 0.9 18 211-228 66-83 (101)
62 PF05008 V-SNARE: Vesicle tran 81.2 14 0.0003 24.8 10.2 74 19-100 5-78 (79)
63 PHA02692 hypothetical protein; 81.0 4.2 9E-05 27.0 4.3 15 217-231 54-68 (70)
64 PF07798 DUF1640: Protein of u 80.7 26 0.00057 27.7 12.5 33 173-205 120-152 (177)
65 PRK01026 tetrahydromethanopter 80.5 15 0.00033 24.9 8.7 22 168-189 17-38 (77)
66 KOG0812 SNARE protein SED5/Syn 80.2 37 0.0008 29.1 10.8 58 140-197 229-286 (311)
67 PF04102 SlyX: SlyX; InterPro 79.3 15 0.00034 24.2 6.9 50 144-193 3-52 (69)
68 PTZ00046 rifin; Provisional 79.3 11 0.00023 33.4 7.7 20 213-232 321-340 (358)
69 PF02009 Rifin_STEVOR: Rifin/s 79.0 2.6 5.6E-05 36.5 3.7 20 213-232 262-281 (299)
70 KOG0994 Extracellular matrix g 78.8 14 0.00029 37.7 8.8 74 6-79 1197-1270(1758)
71 PF10168 Nup88: Nuclear pore c 77.5 34 0.00073 33.4 11.2 28 72-100 629-656 (717)
72 PF11395 DUF2873: Protein of u 77.3 5.7 0.00012 22.9 3.6 10 221-230 23-32 (43)
73 PF11190 DUF2976: Protein of u 77.1 11 0.00024 26.3 5.8 46 186-231 37-83 (87)
74 PF12606 RELT: Tumour necrosis 77.0 3.8 8.3E-05 25.5 3.1 20 212-231 6-25 (50)
75 TIGR01477 RIFIN variant surfac 76.4 26 0.00056 31.0 9.1 20 213-232 316-335 (353)
76 KOG0860 Synaptobrevin/VAMP-lik 75.5 30 0.00065 25.5 9.9 16 175-190 69-84 (116)
77 KOG1691 emp24/gp25L/p24 family 75.1 20 0.00043 29.2 7.6 71 145-233 134-204 (210)
78 KOG1692 Putative cargo transpo 74.8 29 0.00063 28.0 8.2 35 199-233 161-195 (201)
79 PRK09793 methyl-accepting prot 74.7 34 0.00074 31.9 10.3 16 216-231 197-212 (533)
80 PF12669 P12: Virus attachment 74.7 3.3 7.1E-05 26.6 2.5 7 225-231 16-22 (58)
81 PRK02119 hypothetical protein; 74.2 24 0.00051 23.7 7.9 51 141-191 5-55 (73)
82 PHA02657 hypothetical protein; 72.3 6.8 0.00015 27.1 3.6 22 211-232 29-50 (95)
83 PF00523 Fusion_gly: Fusion gl 71.5 2.8 6E-05 38.8 2.1 29 175-203 440-468 (490)
84 KOG3065 SNAP-25 (synaptosome-a 71.5 62 0.0014 27.6 10.1 53 152-204 86-138 (273)
85 KOG0995 Centromere-associated 71.4 93 0.002 29.4 16.1 87 75-178 300-386 (581)
86 PHA03386 P10 fibrous body prot 71.4 33 0.00071 24.2 7.1 50 137-190 11-60 (94)
87 TIGR00606 rad50 rad50. This fa 71.1 1.4E+02 0.0031 31.4 15.9 57 145-201 984-1042(1311)
88 PF10498 IFT57: Intra-flagella 71.1 76 0.0017 28.3 12.4 65 140-204 282-348 (359)
89 PF15106 TMEM156: TMEM156 prot 70.8 5.9 0.00013 32.2 3.6 22 209-230 177-198 (226)
90 PRK00846 hypothetical protein; 70.8 30 0.00066 23.5 8.1 49 144-192 12-60 (77)
91 PRK00736 hypothetical protein; 70.7 28 0.0006 23.0 7.7 47 145-191 5-51 (68)
92 PF10661 EssA: WXG100 protein 69.9 7.9 0.00017 29.8 4.0 17 215-231 125-141 (145)
93 PF01105 EMP24_GP25L: emp24/gp 68.7 1.5 3.3E-05 34.0 -0.1 40 194-233 143-182 (183)
94 PRK04325 hypothetical protein; 68.7 33 0.00071 23.1 8.1 47 145-191 9-55 (74)
95 PF15145 DUF4577: Domain of un 68.5 6 0.00013 28.8 2.9 19 212-230 68-86 (128)
96 PF03904 DUF334: Domain of unk 68.5 67 0.0015 26.6 12.9 12 194-205 134-145 (230)
97 COG5415 Predicted integral mem 68.5 27 0.00058 28.6 6.8 26 175-200 17-42 (251)
98 COG3763 Uncharacterized protei 68.2 10 0.00023 25.2 3.7 19 212-230 7-25 (71)
99 PF09125 COX2-transmemb: Cytoc 67.4 14 0.00029 21.3 3.6 19 211-229 17-35 (38)
100 PRK00295 hypothetical protein; 67.3 33 0.00072 22.6 7.8 47 145-191 5-51 (68)
101 PRK04406 hypothetical protein; 66.1 38 0.00083 22.9 8.5 50 142-191 8-57 (75)
102 KOG0859 Synaptobrevin/VAMP-lik 64.7 24 0.00053 28.5 5.9 13 148-160 128-140 (217)
103 PF05957 DUF883: Bacterial pro 64.6 45 0.00098 23.2 10.4 25 144-168 8-32 (94)
104 PF04678 DUF607: Protein of un 64.1 60 0.0013 25.8 8.2 36 193-228 80-115 (180)
105 PF04639 Baculo_E56: Baculovir 64.0 4.3 9.2E-05 34.6 1.6 27 207-233 275-301 (305)
106 PF04277 OAD_gamma: Oxaloaceta 63.4 13 0.00028 25.0 3.7 20 213-232 13-32 (79)
107 KOG1693 emp24/gp25L/p24 family 63.3 12 0.00027 30.2 4.0 28 205-233 173-200 (209)
108 PF05399 EVI2A: Ectropic viral 62.1 13 0.00029 30.3 4.0 17 213-229 133-149 (227)
109 PF06716 DUF1201: Protein of u 62.1 14 0.0003 22.5 3.1 13 219-231 21-33 (54)
110 PF11337 DUF3139: Protein of u 61.6 12 0.00025 25.9 3.2 6 222-227 20-25 (85)
111 PRK15048 methyl-accepting chem 61.5 93 0.002 29.0 10.3 15 81-95 86-100 (553)
112 COG4640 Predicted membrane pro 61.4 13 0.00028 33.2 4.2 16 218-233 60-75 (465)
113 KOG0862 Synaptobrevin/VAMP-lik 61.1 72 0.0016 26.2 8.1 42 145-186 134-175 (216)
114 PLN03160 uncharacterized prote 60.7 2.5 5.5E-05 34.8 -0.3 29 201-229 33-61 (219)
115 PF13747 DUF4164: Domain of un 60.0 57 0.0012 22.8 8.5 55 147-201 34-88 (89)
116 PF12751 Vac7: Vacuolar segreg 59.6 9.7 0.00021 33.9 3.1 15 210-224 304-318 (387)
117 PF15188 CCDC-167: Coiled-coil 59.0 31 0.00067 24.0 4.9 23 180-202 43-65 (85)
118 PRK02793 phi X174 lysis protei 58.9 52 0.0011 22.0 8.1 48 144-191 7-54 (72)
119 COG4575 ElaB Uncharacterized c 58.6 67 0.0015 23.2 11.3 76 138-214 12-89 (104)
120 PF13955 Fst_toxin: Toxin Fst, 58.3 23 0.0005 17.8 3.4 20 214-233 2-21 (21)
121 PF09889 DUF2116: Uncharacteri 58.2 14 0.00031 23.8 2.9 6 220-225 51-56 (59)
122 PF01519 DUF16: Protein of unk 58.2 67 0.0015 23.1 7.2 55 145-199 37-93 (102)
123 PF08370 PDR_assoc: Plant PDR 58.1 17 0.00037 23.9 3.4 28 206-233 27-54 (65)
124 PF11119 DUF2633: Protein of u 57.9 21 0.00046 22.9 3.6 24 207-230 7-30 (59)
125 PRK10935 nitrate/nitrite senso 57.9 67 0.0014 29.7 8.7 15 217-231 160-174 (565)
126 PF03670 UPF0184: Uncharacteri 57.3 35 0.00077 23.6 4.9 19 140-158 28-46 (83)
127 KOG3251 Golgi SNAP receptor co 57.2 1.1E+02 0.0023 25.2 10.9 15 50-64 71-85 (213)
128 PRK11875 psbT photosystem II r 57.0 14 0.00031 20.4 2.3 17 212-228 7-23 (31)
129 KOG3950 Gamma/delta sarcoglyca 57.0 11 0.00024 31.5 2.8 26 207-232 36-61 (292)
130 PF12495 Vip3A_N: Vegetative i 57.0 80 0.0017 23.6 7.3 63 128-191 36-105 (177)
131 PRK13415 flagella biosynthesis 57.0 16 0.00036 30.0 3.8 27 207-233 63-89 (219)
132 PF06692 MNSV_P7B: Melon necro 56.8 13 0.00029 23.4 2.5 17 213-229 16-32 (61)
133 PF14002 YniB: YniB-like prote 56.3 80 0.0017 24.7 7.3 26 208-233 139-164 (166)
134 cd00179 SynN Syntaxin N-termin 56.3 84 0.0018 23.6 8.6 61 142-202 10-70 (151)
135 KOG0933 Structural maintenance 55.7 2.4E+02 0.0053 28.8 14.6 56 7-64 709-764 (1174)
136 PF09577 Spore_YpjB: Sporulati 55.4 63 0.0014 26.9 7.1 45 145-190 147-191 (232)
137 COG4575 ElaB Uncharacterized c 55.4 77 0.0017 22.9 7.4 50 9-60 11-60 (104)
138 KOG0994 Extracellular matrix g 55.4 2.7E+02 0.0058 29.1 13.3 20 81-100 1617-1636(1758)
139 PRK03814 oxaloacetate decarbox 55.3 22 0.00048 24.7 3.8 21 213-233 20-40 (85)
140 TIGR01195 oadG_fam sodium pump 54.6 21 0.00045 24.6 3.5 19 214-232 17-35 (82)
141 COG4942 Membrane-bound metallo 54.1 1.7E+02 0.0038 26.6 10.2 53 144-196 44-96 (420)
142 PF08650 DASH_Dad4: DASH compl 54.1 54 0.0012 22.0 5.3 36 170-205 8-43 (72)
143 COG4068 Uncharacterized protei 53.6 15 0.00033 23.5 2.4 14 211-224 45-58 (64)
144 PF04728 LPP: Lipoprotein leuc 53.3 57 0.0012 20.8 8.7 51 146-203 4-54 (56)
145 TIGR03745 conj_TIGR03745 integ 53.3 33 0.00072 24.7 4.4 47 185-231 52-99 (104)
146 PF10151 DUF2359: Uncharacteri 53.1 1.9E+02 0.0042 26.8 13.2 40 187-227 243-283 (469)
147 CHL00031 psbT photosystem II p 51.9 14 0.0003 20.7 1.8 17 212-228 7-23 (33)
148 PF01601 Corona_S2: Coronaviru 51.6 6.8 0.00015 36.9 0.9 17 46-62 303-319 (610)
149 PF12911 OppC_N: N-terminal TM 51.5 23 0.00049 22.0 3.1 8 219-226 28-35 (56)
150 PRK04654 sec-independent trans 51.1 1.4E+02 0.003 24.5 8.8 24 147-170 29-52 (214)
151 PHA02675 ORF104 fusion protein 51.1 80 0.0017 21.8 7.4 48 150-197 35-82 (90)
152 COG4537 ComGC Competence prote 51.0 24 0.00052 25.3 3.4 36 195-230 3-38 (107)
153 PF10857 DUF2701: Protein of u 50.7 5.3 0.00012 25.9 0.1 16 217-232 6-21 (63)
154 KOG0996 Structural maintenance 50.5 3.1E+02 0.0068 28.5 16.5 18 78-95 860-877 (1293)
155 PRK05529 cell division protein 50.4 13 0.00027 31.4 2.3 35 196-230 24-58 (255)
156 PF06024 DUF912: Nucleopolyhed 50.2 12 0.00026 26.8 1.9 24 208-231 60-83 (101)
157 TIGR02956 TMAO_torS TMAO reduc 49.9 2.8E+02 0.006 27.7 13.1 9 187-195 313-321 (968)
158 PF11239 DUF3040: Protein of u 49.8 54 0.0012 22.3 5.1 23 173-195 9-31 (82)
159 PHA02844 putative transmembran 49.6 9 0.0002 25.7 1.0 24 206-229 48-71 (75)
160 PHA03395 p10 fibrous body prot 49.3 88 0.0019 21.8 7.1 52 137-188 10-64 (87)
161 PRK04778 septation ring format 49.1 2.4E+02 0.0052 26.7 16.2 181 5-203 160-340 (569)
162 PF07889 DUF1664: Protein of u 49.0 1.1E+02 0.0024 22.9 8.5 60 143-202 48-111 (126)
163 COG1622 CyoA Heme/copper-type 48.2 24 0.00052 29.7 3.6 22 211-232 38-59 (247)
164 PF07219 HemY_N: HemY protein 48.0 25 0.00054 25.3 3.3 20 213-232 17-36 (108)
165 COG3630 OadG Na+-transporting 47.9 35 0.00076 23.6 3.7 20 213-232 19-38 (84)
166 PF04021 Class_IIIsignal: Clas 47.8 21 0.00047 19.2 2.2 12 217-228 15-26 (28)
167 PF09771 Tmemb_18A: Transmembr 47.7 70 0.0015 23.9 5.6 36 185-220 5-40 (125)
168 PHA03240 envelope glycoprotein 47.4 18 0.0004 29.6 2.7 8 207-214 215-222 (258)
169 COG4026 Uncharacterized protei 47.0 1E+02 0.0022 25.6 6.8 56 43-98 151-206 (290)
170 PF00846 Hanta_nucleocap: Hant 46.6 81 0.0017 28.3 6.6 54 45-100 13-66 (428)
171 PF09680 Tiny_TM_bacill: Prote 46.6 24 0.00051 18.3 2.1 10 212-221 9-18 (24)
172 PF06196 DUF997: Protein of un 46.0 30 0.00065 23.7 3.2 17 217-233 52-68 (80)
173 PF14992 TMCO5: TMCO5 family 46.0 1.9E+02 0.0042 24.8 12.7 47 139-185 124-170 (280)
174 PF04210 MtrG: Tetrahydrometha 45.6 89 0.0019 20.8 7.3 19 171-189 17-35 (70)
175 PF05957 DUF883: Bacterial pro 45.5 1E+02 0.0022 21.4 12.0 12 218-229 80-91 (94)
176 PRK10600 nitrate/nitrite senso 45.2 1.6E+02 0.0035 27.5 9.1 10 222-231 138-147 (569)
177 PF04906 Tweety: Tweety; Inte 45.0 2.4E+02 0.0052 25.5 10.6 10 216-225 194-203 (406)
178 PF11559 ADIP: Afadin- and alp 45.0 47 0.001 25.3 4.6 20 12-31 30-49 (151)
179 PF05961 Chordopox_A13L: Chord 44.9 38 0.00082 22.4 3.3 12 216-227 9-20 (68)
180 PF13121 DUF3976: Domain of un 44.5 6.2 0.00013 22.6 -0.3 14 211-224 26-39 (41)
181 PF09548 Spore_III_AB: Stage I 44.3 56 0.0012 25.6 5.0 26 75-100 20-45 (170)
182 PHA02682 ORF080 virion core pr 43.8 1.8E+02 0.0038 23.7 7.9 50 12-67 210-259 (280)
183 PRK10633 hypothetical protein; 43.8 39 0.00084 23.2 3.4 16 218-233 53-68 (80)
184 TIGR00847 ccoS cytochrome oxid 43.7 48 0.001 20.7 3.5 11 221-231 17-27 (51)
185 PRK08307 stage III sporulation 43.6 60 0.0013 25.5 5.1 25 76-100 22-46 (171)
186 PF03597 CcoS: Cytochrome oxid 43.2 50 0.0011 20.0 3.5 10 222-231 17-26 (45)
187 PF01405 PsbT: Photosystem II 43.2 30 0.00065 18.8 2.2 15 213-227 8-22 (29)
188 PF12420 DUF3671: Protein of u 43.2 30 0.00065 25.0 3.0 15 218-232 86-100 (104)
189 PF07432 Hc1: Histone H1-like 43.1 1.3E+02 0.0029 22.1 6.4 48 150-204 2-49 (123)
190 PRK15396 murein lipoprotein; P 43.1 1.1E+02 0.0023 20.9 8.1 21 183-203 56-76 (78)
191 COG3883 Uncharacterized protei 43.0 2.1E+02 0.0046 24.4 9.7 63 140-202 33-95 (265)
192 PF10234 Cluap1: Clusterin-ass 42.9 1.5E+02 0.0033 25.2 7.6 61 36-96 157-217 (267)
193 KOG0964 Structural maintenance 42.8 3.9E+02 0.0084 27.4 15.3 22 147-168 399-420 (1200)
194 COG3071 HemY Uncharacterized e 42.6 32 0.0007 30.8 3.7 22 212-233 45-66 (400)
195 PF00523 Fusion_gly: Fusion gl 42.6 39 0.00085 31.4 4.4 20 178-197 436-455 (490)
196 TIGR02833 spore_III_AB stage I 42.1 64 0.0014 25.3 5.0 25 76-100 21-45 (170)
197 PF05552 TM_helix: Conserved T 41.9 33 0.00071 21.2 2.7 16 217-232 19-34 (53)
198 PRK14710 hypothetical protein; 41.8 36 0.00077 22.7 2.9 18 209-226 10-27 (86)
199 PRK05585 yajC preprotein trans 41.8 30 0.00065 25.0 2.9 9 221-229 26-34 (106)
200 COG3462 Predicted membrane pro 41.7 43 0.00094 24.4 3.5 10 219-228 61-70 (117)
201 PF12325 TMF_TATA_bd: TATA ele 41.5 99 0.0021 22.9 5.6 21 80-100 93-113 (120)
202 PF05283 MGC-24: Multi-glycosy 41.4 24 0.00053 28.3 2.5 13 221-233 172-184 (186)
203 PF07106 TBPIP: Tat binding pr 41.3 1.7E+02 0.0036 22.7 10.3 40 43-82 111-151 (169)
204 PHA03049 IMV membrane protein; 41.1 47 0.001 21.8 3.3 7 217-223 10-16 (68)
205 KOG1690 emp24/gp25L/p24 family 41.1 94 0.002 25.3 5.7 31 138-168 132-162 (215)
206 PF12108 SF3a60_bindingd: Spli 40.9 28 0.0006 18.9 1.9 15 3-17 4-18 (28)
207 PF04210 MtrG: Tetrahydrometha 40.7 1.1E+02 0.0024 20.4 7.3 27 175-201 14-40 (70)
208 PHA02650 hypothetical protein; 40.7 33 0.00072 23.4 2.7 24 206-229 49-72 (81)
209 TIGR02115 potass_kdpF K+-trans 40.3 41 0.00088 17.9 2.4 13 218-230 7-19 (26)
210 PHA02975 hypothetical protein; 39.8 34 0.00074 22.6 2.6 17 211-227 49-65 (69)
211 PF05377 FlaC_arch: Flagella a 39.8 98 0.0021 19.6 6.0 34 149-182 4-37 (55)
212 PF11137 DUF2909: Protein of u 39.8 55 0.0012 21.3 3.6 20 212-231 6-25 (63)
213 PF15106 TMEM156: TMEM156 prot 39.7 36 0.00078 27.8 3.2 28 206-233 171-198 (226)
214 smart00503 SynN Syntaxin N-ter 39.1 1.4E+02 0.003 21.1 8.6 62 141-202 11-72 (117)
215 TIGR01732 tiny_TM_bacill conse 39.0 38 0.00081 17.9 2.1 10 212-221 11-20 (26)
216 PHA02902 putative IMV membrane 38.9 56 0.0012 21.4 3.4 17 213-229 7-23 (70)
217 PF15361 RIC3: Resistance to i 38.8 45 0.00097 25.8 3.6 26 207-232 79-104 (152)
218 PF06682 DUF1183: Protein of u 38.7 25 0.00054 30.7 2.4 13 217-229 163-175 (318)
219 TIGR02132 phaR_Bmeg polyhydrox 38.4 2E+02 0.0044 22.9 9.2 46 145-190 93-138 (189)
220 PF11293 DUF3094: Protein of u 38.2 75 0.0016 20.0 3.7 24 208-231 30-53 (55)
221 PF13179 DUF4006: Family of un 37.8 60 0.0013 21.4 3.5 14 218-231 23-36 (66)
222 PF06084 Cytomega_TRL10: Cytom 37.6 16 0.00034 26.8 0.8 10 218-227 71-80 (150)
223 PF14362 DUF4407: Domain of un 37.6 2.6E+02 0.0056 23.8 14.9 15 219-233 271-285 (301)
224 PF05739 SNARE: SNARE domain; 37.3 1E+02 0.0023 19.2 10.5 58 138-195 4-61 (63)
225 PF02790 COX2_TM: Cytochrome C 37.3 62 0.0013 21.7 3.8 17 215-231 32-48 (84)
226 smart00502 BBC B-Box C-termina 37.3 1.5E+02 0.0033 21.0 8.5 54 152-205 39-93 (127)
227 PRK09973 putative outer membra 37.0 1.4E+02 0.0031 20.7 7.0 33 147-179 40-72 (85)
228 TIGR03142 cytochro_ccmI cytoch 36.8 1.7E+02 0.0036 21.3 7.1 20 210-229 94-113 (117)
229 PF06679 DUF1180: Protein of u 36.8 37 0.0008 26.7 2.8 13 220-232 104-116 (163)
230 PF09604 Potass_KdpF: F subuni 36.7 66 0.0014 16.9 2.9 12 218-229 8-19 (25)
231 PF15397 DUF4618: Domain of un 36.3 2.7E+02 0.0058 23.6 16.3 51 144-194 171-221 (258)
232 PRK10573 type IV pilin biogene 36.3 3.1E+02 0.0067 24.4 9.2 12 191-202 155-166 (399)
233 PF05933 Fun_ATP-synt_8: Funga 36.1 42 0.00092 20.6 2.4 16 217-232 15-30 (48)
234 KOG3287 Membrane trafficking p 35.9 1.6E+02 0.0035 24.3 6.4 17 143-159 151-167 (236)
235 PF13260 DUF4051: Protein of u 35.8 39 0.00085 20.7 2.2 10 219-228 10-19 (54)
236 PF13060 DUF3921: Protein of u 35.1 1.1E+02 0.0024 18.8 6.8 36 156-191 12-47 (58)
237 PF10267 Tmemb_cc2: Predicted 35.1 3.5E+02 0.0075 24.5 15.1 54 140-193 263-318 (395)
238 PF00558 Vpu: Vpu protein; In 35.1 59 0.0013 22.4 3.3 9 221-229 17-25 (81)
239 PF02203 TarH: Tar ligand bind 34.9 2E+02 0.0043 21.7 7.9 47 13-60 55-101 (171)
240 PHA03093 EEV glycoprotein; Pro 34.5 35 0.00075 27.2 2.3 17 207-223 34-51 (185)
241 PRK01026 tetrahydromethanopter 34.5 1.5E+02 0.0032 20.2 7.2 27 176-202 18-44 (77)
242 PF03408 Foamy_virus_ENV: Foam 34.4 58 0.0013 32.0 4.2 32 198-229 52-83 (981)
243 PF14523 Syntaxin_2: Syntaxin- 34.4 1.6E+02 0.0034 20.4 6.7 55 146-201 4-58 (102)
244 TIGR01478 STEVOR variant surfa 34.0 50 0.0011 28.3 3.3 17 53-69 78-94 (295)
245 TIGR00540 hemY_coli hemY prote 33.9 44 0.00095 29.9 3.3 15 217-231 49-63 (409)
246 PRK09039 hypothetical protein; 33.8 3.3E+02 0.0072 24.0 14.9 66 136-201 128-194 (343)
247 PF06363 Picorna_P3A: Picornav 33.5 1.7E+02 0.0037 20.6 6.7 46 182-227 47-92 (100)
248 KOG3838 Mannose lectin ERGIC-5 33.4 3.7E+02 0.0081 24.4 9.9 20 211-230 466-485 (497)
249 PF10046 BLOC1_2: Biogenesis o 33.2 1.8E+02 0.0038 20.6 9.1 54 142-199 39-92 (99)
250 PF06193 Orthopox_A5L: Orthopo 33.2 2.4E+02 0.0052 22.2 7.7 53 149-201 108-160 (166)
251 COG4064 MtrG Tetrahydromethano 33.0 1.5E+02 0.0032 19.7 7.8 24 166-189 15-38 (75)
252 PF03915 AIP3: Actin interacti 32.5 2.9E+02 0.0062 25.3 8.1 56 45-100 210-270 (424)
253 KOG0859 Synaptobrevin/VAMP-lik 32.4 91 0.002 25.3 4.4 16 145-160 122-137 (217)
254 KOG4606 Uncharacterized conser 32.4 1.8E+02 0.0039 21.2 5.4 38 184-221 5-42 (126)
255 PTZ00370 STEVOR; Provisional 32.2 55 0.0012 28.1 3.3 16 53-68 77-92 (296)
256 PF06422 PDR_CDR: CDR ABC tran 32.2 62 0.0013 23.1 3.2 7 206-212 48-54 (103)
257 TIGR02120 GspF general secreti 32.1 3.6E+02 0.0078 23.9 8.9 13 177-189 140-152 (399)
258 COG5481 Uncharacterized conser 31.8 1.4E+02 0.0031 19.2 6.2 56 43-99 6-61 (67)
259 COG3190 FliO Flagellar biogene 31.8 70 0.0015 24.4 3.5 18 215-232 31-48 (137)
260 PHA02673 ORF109 EEV glycoprote 31.7 88 0.0019 24.4 4.1 19 207-225 31-50 (161)
261 TIGR02230 ATPase_gene1 F0F1-AT 31.7 1.5E+02 0.0033 21.2 5.0 24 207-230 73-96 (100)
262 PF00261 Tropomyosin: Tropomyo 31.4 2.6E+02 0.0057 23.0 7.3 63 140-202 10-72 (237)
263 PRK11486 flagellar biosynthesi 31.2 82 0.0018 23.5 3.8 14 218-231 27-40 (124)
264 COG3071 HemY Uncharacterized e 31.1 48 0.001 29.8 2.9 23 211-233 40-62 (400)
265 KOG0250 DNA repair protein RAD 31.0 6.1E+02 0.013 26.2 17.1 64 142-205 405-468 (1074)
266 PHA03231 glycoprotein BALF4; P 30.8 2.1E+02 0.0045 28.5 7.4 21 7-27 333-354 (829)
267 TIGR02976 phageshock_pspB phag 30.5 93 0.002 21.0 3.6 8 224-231 18-25 (75)
268 PRK10747 putative protoheme IX 30.2 56 0.0012 29.2 3.3 6 225-230 57-62 (398)
269 PF13124 DUF3963: Protein of u 30.2 59 0.0013 18.6 2.1 7 210-216 25-31 (40)
270 KOG4812 Golgi-associated prote 30.1 64 0.0014 27.0 3.3 26 206-231 223-248 (262)
271 PF06120 Phage_HK97_TLTM: Tail 29.9 3.7E+02 0.0081 23.3 9.3 67 132-198 39-113 (301)
272 PF04835 Pox_A9: A9 protein co 29.8 1E+02 0.0022 19.4 3.4 17 213-229 30-46 (54)
273 PF06837 Fijivirus_P9-2: Fijiv 29.7 73 0.0016 25.6 3.4 13 174-186 54-66 (214)
274 TIGR01149 mtrG N5-methyltetrah 29.7 1.7E+02 0.0038 19.4 7.3 22 168-189 14-35 (70)
275 COG3197 FixS Uncharacterized p 29.4 70 0.0015 20.5 2.7 7 225-231 21-27 (58)
276 PRK10856 cytoskeletal protein 29.3 65 0.0014 28.3 3.5 10 73-82 28-37 (331)
277 KOG3647 Predicted coiled-coil 29.2 3.7E+02 0.008 23.0 10.2 93 4-96 44-160 (338)
278 PF00261 Tropomyosin: Tropomyo 29.1 3.3E+02 0.0071 22.5 8.7 57 144-200 91-147 (237)
279 COG1459 PulF Type II secretory 29.1 2.3E+02 0.0049 25.7 6.9 33 170-202 130-165 (397)
280 PF06682 DUF1183: Protein of u 29.0 54 0.0012 28.7 2.8 16 217-232 160-175 (318)
281 PF04568 IATP: Mitochondrial A 29.0 1.4E+02 0.0031 21.3 4.6 26 158-183 75-100 (100)
282 KOG3156 Uncharacterized membra 28.9 1.1E+02 0.0024 25.0 4.4 24 77-100 117-140 (220)
283 COG2900 SlyX Uncharacterized p 28.6 1.9E+02 0.004 19.4 7.5 47 144-190 7-53 (72)
284 PF05384 DegS: Sensor protein 28.4 2.9E+02 0.0063 21.6 12.8 53 41-100 20-72 (159)
285 PF10241 KxDL: Uncharacterized 28.3 2E+02 0.0044 19.8 10.4 69 130-198 14-82 (88)
286 PF11120 DUF2636: Protein of u 28.1 1E+02 0.0022 20.1 3.3 17 217-233 12-28 (62)
287 PF06789 UPF0258: Uncharacteri 27.9 12 0.00025 28.9 -1.2 11 207-217 133-143 (159)
288 PF10256 Erf4: Golgin subfamil 27.9 2.3E+02 0.005 20.4 5.8 25 188-212 34-58 (118)
289 PF09472 MtrF: Tetrahydrometha 27.9 1.8E+02 0.0039 19.0 4.9 7 195-201 32-38 (64)
290 PF09777 OSTMP1: Osteopetrosis 27.7 1.6E+02 0.0034 24.6 5.3 13 218-230 197-209 (237)
291 PF12777 MT: Microtubule-bindi 27.5 3.3E+02 0.0072 23.9 7.6 60 143-202 233-292 (344)
292 PRK13275 mtrF tetrahydromethan 27.4 1.9E+02 0.0041 19.1 6.2 17 213-229 49-65 (67)
293 PRK10747 putative protoheme IX 27.1 59 0.0013 29.0 2.9 19 214-232 43-61 (398)
294 PF11945 WASH_WAHD: WAHD domai 27.0 4.2E+02 0.0091 23.0 8.2 34 158-191 35-68 (297)
295 KOG2927 Membrane component of 26.8 71 0.0015 28.3 3.2 20 212-231 232-251 (372)
296 PF11511 RhodobacterPufX: Intr 26.6 1.3E+02 0.0029 19.8 3.7 17 217-233 36-52 (67)
297 TIGR02507 MtrF tetrahydrometha 26.5 1.9E+02 0.0042 19.0 6.0 11 223-233 55-65 (65)
298 PF12718 Tropomyosin_1: Tropom 26.4 2.9E+02 0.0063 21.0 9.4 63 142-204 46-111 (143)
299 PRK06231 F0F1 ATP synthase sub 26.2 93 0.002 25.2 3.7 11 219-229 59-69 (205)
300 PF11027 DUF2615: Protein of u 26.1 2E+02 0.0044 20.7 4.9 14 190-203 15-28 (103)
301 TIGR02848 spore_III_AC stage I 25.9 2E+02 0.0043 18.9 4.4 37 194-231 17-53 (64)
302 PF09527 ATPase_gene1: Putativ 25.9 1.7E+02 0.0036 18.0 4.7 25 207-231 31-55 (55)
303 PF05781 MRVI1: MRVI1 protein; 25.8 2E+02 0.0043 27.1 6.0 21 44-64 251-271 (538)
304 PF08041 PetM: PetM family of 25.7 1.3E+02 0.0028 16.7 3.9 8 225-232 20-27 (31)
305 PF05393 Hum_adeno_E3A: Human 25.6 88 0.0019 21.9 2.8 8 221-228 45-52 (94)
306 PF11057 Cortexin: Cortexin of 25.4 1.2E+02 0.0026 20.5 3.4 17 208-224 30-46 (81)
307 PF15176 LRR19-TM: Leucine-ric 25.3 1.2E+02 0.0027 21.7 3.6 14 218-231 26-39 (102)
308 PRK10573 type IV pilin biogene 25.2 3.2E+02 0.007 24.3 7.3 12 177-188 138-149 (399)
309 KOG4677 Golgi integral membran 25.1 1.9E+02 0.004 26.7 5.5 40 174-213 493-534 (554)
310 PHA02414 hypothetical protein 25.0 2.6E+02 0.0056 19.9 9.7 38 149-186 33-70 (111)
311 PF06009 Laminin_II: Laminin D 25.0 24 0.00052 26.7 0.0 52 142-193 49-103 (138)
312 smart00806 AIP3 Actin interact 24.8 5.4E+02 0.012 23.5 8.8 90 5-99 219-319 (426)
313 COG3736 VirB8 Type IV secretor 24.7 1.2E+02 0.0026 25.4 4.0 35 193-229 30-64 (239)
314 cd00193 t_SNARE Soluble NSF (N 24.7 1.7E+02 0.0037 17.7 8.2 47 144-190 12-58 (60)
315 PF00804 Syntaxin: Syntaxin; 24.6 2.3E+02 0.005 19.2 7.7 62 141-202 10-71 (103)
316 PF15183 MRAP: Melanocortin-2 24.4 1.4E+02 0.003 20.7 3.5 16 215-230 46-61 (90)
317 PF03904 DUF334: Domain of unk 24.3 4.2E+02 0.009 22.0 10.9 31 159-189 113-143 (230)
318 PF11688 DUF3285: Protein of u 24.3 1.7E+02 0.0037 17.5 5.1 37 188-229 7-43 (45)
319 cd00238 ERp29c ERp29 and ERp38 24.2 2.6E+02 0.0056 19.6 5.9 48 39-87 44-92 (93)
320 PF13198 DUF4014: Protein of u 23.9 92 0.002 20.8 2.6 8 223-230 34-41 (72)
321 PRK10404 hypothetical protein; 23.8 2.8E+02 0.006 19.8 10.9 43 149-191 13-56 (101)
322 smart00319 TarH Homologues of 23.1 2.9E+02 0.0062 19.7 8.0 15 44-58 45-59 (135)
323 PF13677 MotB_plug: Membrane M 23.1 1E+02 0.0022 19.6 2.6 16 215-230 24-39 (58)
324 TIGR01568 A_thal_3678 uncharac 23.1 1E+02 0.0022 20.3 2.7 19 3-21 6-24 (66)
325 PRK11876 petM cytochrome b6-f 22.9 1.5E+02 0.0032 16.6 2.9 7 225-231 22-28 (32)
326 PF05791 Bacillus_HBL: Bacillu 22.8 3.9E+02 0.0084 21.1 9.2 61 144-204 102-162 (184)
327 PF01034 Syndecan: Syndecan do 22.7 24 0.00053 23.1 -0.3 12 218-229 25-36 (64)
328 TIGR00540 hemY_coli hemY prote 22.7 80 0.0017 28.2 2.9 18 214-231 43-60 (409)
329 COG1459 PulF Type II secretory 22.5 3.5E+02 0.0076 24.4 6.9 42 161-202 107-151 (397)
330 PF09451 ATG27: Autophagy-rela 22.4 76 0.0016 26.9 2.6 21 210-230 200-220 (268)
331 PF05827 ATP-synt_S1: Vacuolar 22.2 1.1E+02 0.0023 26.0 3.4 18 209-226 260-277 (282)
332 PF03935 SKN1: Beta-glucan syn 22.1 68 0.0015 29.9 2.3 21 209-229 45-65 (504)
333 KOG2546 Abl interactor ABI-1, 22.0 4.8E+02 0.01 23.9 7.4 47 145-191 55-101 (483)
334 PF02932 Neur_chan_memb: Neuro 21.9 1.1E+02 0.0024 23.3 3.3 19 211-229 64-82 (237)
335 COG5000 NtrY Signal transducti 21.6 3E+02 0.0065 26.6 6.3 52 179-230 248-299 (712)
336 COG4942 Membrane-bound metallo 21.5 6.3E+02 0.014 23.1 16.3 45 17-64 38-82 (420)
337 PF04728 LPP: Lipoprotein leuc 21.4 2.3E+02 0.005 18.0 6.6 37 143-179 15-51 (56)
338 PF10805 DUF2730: Protein of u 21.3 3.2E+02 0.0069 19.6 7.6 48 138-185 42-91 (106)
339 PRK10525 cytochrome o ubiquino 21.3 41 0.0009 29.3 0.7 18 215-232 52-69 (315)
340 PF06738 DUF1212: Protein of u 21.2 3.4E+02 0.0073 21.3 6.0 23 181-203 76-98 (193)
341 PF02346 Vac_Fusion: Chordopox 21.2 2.4E+02 0.0051 18.0 7.3 49 148-196 4-52 (57)
342 PF04844 Ovate: Transcriptiona 21.2 1.1E+02 0.0025 19.6 2.6 18 4-21 1-18 (59)
343 PF06422 PDR_CDR: CDR ABC tran 21.0 1.4E+02 0.0031 21.2 3.4 16 209-224 48-63 (103)
344 PF05008 V-SNARE: Vesicle tran 20.9 2.6E+02 0.0056 18.4 5.8 58 6-65 21-78 (79)
345 COG2149 Predicted membrane pro 20.9 2.9E+02 0.0063 20.5 4.9 11 195-205 80-90 (120)
346 PRK02919 oxaloacetate decarbox 20.9 1.6E+02 0.0035 20.3 3.4 13 219-231 25-37 (82)
347 PTZ00208 65 kDa invariant surf 20.8 1.1E+02 0.0024 27.6 3.3 23 152-174 283-305 (436)
348 PF02970 TBCA: Tubulin binding 20.7 3E+02 0.0066 19.1 6.4 57 147-204 23-79 (90)
349 COG5185 HEC1 Protein involved 20.5 7.1E+02 0.015 23.3 13.3 27 75-101 336-362 (622)
350 PF02419 PsbL: PsbL protein; 20.5 1.9E+02 0.0041 16.6 3.6 12 217-228 24-35 (37)
351 PRK08307 stage III sporulation 20.3 4.3E+02 0.0092 20.7 6.6 23 159-181 113-136 (171)
352 TIGR01010 BexC_CtrB_KpsE polys 20.3 5.9E+02 0.013 22.3 15.9 26 174-199 279-304 (362)
353 COG4499 Predicted membrane pro 20.2 2.1E+02 0.0046 25.8 4.8 12 173-184 185-196 (434)
354 PF10140 YukC: WXG100 protein 20.2 52 0.0011 29.3 1.1 18 211-228 198-215 (359)
355 PF11446 DUF2897: Protein of u 20.1 1.5E+02 0.0034 18.7 3.0 13 209-221 5-17 (55)
356 smart00397 t_SNARE Helical reg 20.0 2.3E+02 0.0049 17.4 9.1 51 140-190 14-64 (66)
No 1
>KOG3202 consensus SNARE protein TLG1/Syntaxin 6 [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=9.3e-37 Score=248.96 Aligned_cols=227 Identities=43% Similarity=0.697 Sum_probs=197.1
Q ss_pred CCCCCCcHHHHHHHHHHHHHHHHHhhHhhhCCCCC-CchhHHHHHHHHHHHHHHHHhHHHHHHHHhcCCCCCCCCHHHHH
Q 026774 1 MASASDSWIKEYNEAIKLADDINGMISERSSMPAS-GPESQRHASAIRRKITILGTRLDSLQSLLSKLPGKQPISEKEMN 79 (233)
Q Consensus 1 m~s~~D~~~~~~~ev~~~l~~i~~~i~~r~~~~~~-~~e~~~~~~~Ir~~l~~l~~~l~~L~~~l~~~~~~~~~~~~E~~ 79 (233)
|+|+.|||+..|.++.+..+.++..+++|..+... +++..+.+..|++.+...-.+++++...+.+.|++++++..|++
T Consensus 1 ~~~~~Dp~~~v~~e~~k~~~~~~~~~~r~~~~~~~~~~~~~~~t~~lr~~i~~~~edl~~~~~il~~~~~~~~ide~El~ 80 (235)
T KOG3202|consen 1 MLSSEDPFFRVKNETLKLSEEIQGLYQRRSELLKDTGSDAEELTSVLRRSIEEDLEDLDELISILERNPSKFGIDEFELS 80 (235)
T ss_pred CCCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHhHHHHHHHHHHHHHHHhCcccccCcHHHHH
Confidence 78999999999999999999999999999987666 56678899999977777777777777777899999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhccccccC---CCCcCCCCCCCh--hhhhcccCCCc-hhHHHHHHHHHHHHHHHHHHHHHH
Q 026774 80 RRKDMLANLRSKVNQMASTLNMSNFAN---RDSLLGPEIKSA--DVMNRATGLDN-QGLVGFQRQIMREQDEGLEKLEET 153 (233)
Q Consensus 80 ~R~~~~~~l~~~l~~l~~~~~~~~~~~---r~~l~~~~~~~~--~e~~~~~~~~~-~~~~~~q~~~~~~qd~~l~~l~~~ 153 (233)
+|+.++.+++.++.+++..|......+ |..++++...|. .......+.|+ .+..++|++++++||+.||.|+++
T Consensus 81 ~R~~~i~~lr~q~~~~~~~~~~~~~~~~~~r~~l~~~~~~~~~~~~~~~~~~~D~v~~~~~~qqqm~~eQDe~Ld~ls~t 160 (235)
T KOG3202|consen 81 RRRRFIDNLRTQLRQMKSKMAMSGFANSNIRDILLGPEKSPNLDEAMSRASGLDNVQEIVQLQQQMLQEQDEGLDGLSAT 160 (235)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccccccchhhhcCCCCCCchhhhHHHhhccCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999997643333 777787766563 34556677785 667788999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHH
Q 026774 154 VVSTKHIALAVNEELDLHTRLIDDLDQHVDVTDSRLRRVQKNLAILNKRTKGGCTCMCMLLAVIGIVVLVVVIYM 228 (233)
Q Consensus 154 v~~l~~~~~~i~~ev~~Q~~~ld~i~~~vd~~~~~l~~~~~~l~~~~~~~~~~~~~~~i~~l~i~lv~l~v~i~~ 228 (233)
|+++|++|..||+|+++|+.+||++++.||.|+.++.++++++.++.+. .+.|.+||+++++++++++.|+||+
T Consensus 161 i~rlk~~a~~~g~EL~~Q~~llDdl~~e~d~t~srl~~~~~~l~~v~~~-~s~~~~~~~il~l~~~~~lvv~i~~ 234 (235)
T KOG3202|consen 161 VQRLKGMALAMGEELEEQGRLLDDLDNEMDRTESRLDRVMKRLAKVNRM-ASQCSQWCAILLLVGLLLLVVIIFI 234 (235)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hccccchhHHHHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999999999999999999999994 4558888888777777777777764
No 2
>KOG0809 consensus SNARE protein TLG2/Syntaxin 16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.80 E-value=1.6e-17 Score=137.67 Aligned_cols=216 Identities=16% Similarity=0.251 Sum_probs=147.7
Q ss_pred cHHHHHHHHHHHHHHHHHhhHh------hhCCCCCCchhHHHHHHHHHHHHHHHHhHHHHHHHHhcCCCCC-CCCHHHHH
Q 026774 7 SWIKEYNEAIKLADDINGMISE------RSSMPASGPESQRHASAIRRKITILGTRLDSLQSLLSKLPGKQ-PISEKEMN 79 (233)
Q Consensus 7 ~~~~~~~ev~~~l~~i~~~i~~------r~~~~~~~~e~~~~~~~Ir~~l~~l~~~l~~L~~~l~~~~~~~-~~~~~E~~ 79 (233)
.|.+..++|...+..+|..+.+ ++..|.-+. ..+-.++|...-..+...+...++.+....+.. ..++.|.-
T Consensus 58 ~wvd~~~ev~~~l~rvrrk~~eLgk~~~Khl~PsF~D-k~ede~~IE~ltq~Itqll~~cqk~iq~~~a~~n~~~~~e~~ 136 (305)
T KOG0809|consen 58 AWVDVAEEVDYYLSRVRRKIDELGKAHAKHLRPSFSD-KREDEHEIEELTQEITQLLQKCQKLIQRLSASLNQLSPSERL 136 (305)
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCc-cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCChHHHH
Confidence 3999999999999999999854 344443332 112245555555555566666666654333222 25788988
Q ss_pred HHHHHHHHHHHHHHHHHHHhcccc--c----cCCCC----cCCCCCCChhhhhcccCCCchhHHHHH-------HHHHHH
Q 026774 80 RRKDMLANLRSKVNQMASTLNMSN--F----ANRDS----LLGPEIKSADVMNRATGLDNQGLVGFQ-------RQIMRE 142 (233)
Q Consensus 80 ~R~~~~~~l~~~l~~l~~~~~~~~--~----~~r~~----l~~~~~~~~~e~~~~~~~~~~~~~~~q-------~~~~~~ 142 (233)
-+.++...+..++..+...|+..+ + .++.. .+. +..|.-...+...++...+.+.| ..+..+
T Consensus 137 ~~~n~~~~la~~LQ~~s~~fR~~Qs~YLK~l~~~ee~~~~~e~-~~~~~~~~~dd~d~~~~~~qe~ql~~~e~~~~~~~e 215 (305)
T KOG0809|consen 137 LRKNAQGYLALQLQTLSREFRGLQSKYLKRLRNREENSQEYED-SLDNTVDLPDDEDFSDRTFQEQQLMLFENNEEVVRE 215 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhchhhcccchhh-hccccccCcchhhhhhhhHHHHHHHHHhcchHHHHH
Confidence 999999999999999999997543 1 11111 110 00110000001111111111111 123457
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHH
Q 026774 143 QDEGLEKLEETVVSTKHIALAVNEELDLHTRLIDDLDQHVDVTDSRLRRVQKNLAILNKRTKGGCTCMCMLLAVIGIVVL 222 (233)
Q Consensus 143 qd~~l~~l~~~v~~l~~~~~~i~~ev~~Q~~~ld~i~~~vd~~~~~l~~~~~~l~~~~~~~~~~~~~~~i~~l~i~lv~l 222 (233)
.++++-++..+|..|.+++.+++..|.+|+.++|+||+++++|..+++.|.+.+.|+-.+++..++|+||++|++++|++
T Consensus 216 rE~EV~ql~~sI~dL~~if~DL~~lVvdQGtvvDRIDyNvEqt~~~v~~a~keL~KAe~yQk~~~k~~~i~~L~l~ii~l 295 (305)
T KOG0809|consen 216 REKEVTQLVESIYDLNQIFKDLSALVVDQGTVVDRIDYNVEQTQVRVEDALKELHKAERYQKRNKKMKVILMLTLLIIAL 295 (305)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhheecchhhhhhhHHhHHHHHHHHHHHHhcCCceEehHHHHHHHHHH
Confidence 78999999999999999999999999999999999999999999999999999999999999988888887776555554
Q ss_pred HH
Q 026774 223 VV 224 (233)
Q Consensus 223 ~v 224 (233)
+|
T Consensus 296 lv 297 (305)
T KOG0809|consen 296 LV 297 (305)
T ss_pred HH
Confidence 44
No 3
>KOG0810 consensus SNARE protein Syntaxin 1 and related proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.77 E-value=2.8e-17 Score=139.59 Aligned_cols=208 Identities=13% Similarity=0.239 Sum_probs=143.7
Q ss_pred CCcHHHHHHHHHHHHHHHHHhhHhhhCCCC-----CCc------hhHHHHHHHHHHHHHHHHhHHHHHHHHhcCCCCCCC
Q 026774 5 SDSWIKEYNEAIKLADDINGMISERSSMPA-----SGP------ESQRHASAIRRKITILGTRLDSLQSLLSKLPGKQPI 73 (233)
Q Consensus 5 ~D~~~~~~~ev~~~l~~i~~~i~~r~~~~~-----~~~------e~~~~~~~Ir~~l~~l~~~l~~L~~~l~~~~~~~~~ 73 (233)
-+.|+...++|...+..+...+++-..... ..+ ....+..++++.-+.++..|..+++.....+... -
T Consensus 35 l~~Ff~~ve~Ir~~i~~l~~~~~~l~~~hs~~l~~~~~~~~~k~~l~~~~~~~~~~a~~Ik~kL~~~e~~~~~~~~~~-~ 113 (297)
T KOG0810|consen 35 LEEFFEDVEEIRDDIEKLDEDVEKLQKLHSKSLHSPNADKELKRKLESLVDEIRRRARKIKTKLKALEKENEADETQN-R 113 (297)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccC-C
Confidence 345888889999988888888766554321 111 1234667777777778888888877766555322 3
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhccccccCC--------CCc--CCCCCCChh-hhhcccCCCchhHH-----H-HH
Q 026774 74 SEKEMNRRKDMLANLRSKVNQMASTLNMSNFANR--------DSL--LGPEIKSAD-VMNRATGLDNQGLV-----G-FQ 136 (233)
Q Consensus 74 ~~~E~~~R~~~~~~l~~~l~~l~~~~~~~~~~~r--------~~l--~~~~~~~~~-e~~~~~~~~~~~~~-----~-~q 136 (233)
+....+.|+.....+..++.+++..|+..+...| ..+ .++. .+.+ +.++..+-++.+.+ + .+
T Consensus 114 ~~~~~r~rrtq~~~~~kkf~~~M~~f~~~~~~~r~~~k~~i~Rql~i~~~~-~~~de~ie~~ie~g~~~~f~~~~i~~~~ 192 (297)
T KOG0810|consen 114 SSAGLRTRRTQTSALSKKLKELMNEFNRTQSKYREEYKERIQRQLFIVGGE-ETTDEEIEEMIESGGSEVFTQKAIQDRG 192 (297)
T ss_pred CCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCC-cCChHHHHHHHHCCChHHHHHHHHHHhh
Confidence 4567788999999999999999999875431111 122 2221 2222 22222222332222 1 11
Q ss_pred --HHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHhcCC--Cchh
Q 026774 137 --RQI---MREQDEGLEKLEETVVSTKHIALAVNEELDLHTRLIDDLDQHVDVTDSRLRRVQKNLAILNKRTKG--GCTC 209 (233)
Q Consensus 137 --~~~---~~~qd~~l~~l~~~v~~l~~~~~~i~~ev~~Q~~~ld~i~~~vd~~~~~l~~~~~~l~~~~~~~~~--~~~~ 209 (233)
++. +++.-..+-.|+.++.+|+++|.+|..+|+.|++|+|+|+.+|.+|..++..|+..++++.++++. +|+|
T Consensus 193 ~~~~~l~Eiq~Rh~~ik~LEksi~ELhqlFlDMa~LVe~QgEmvd~IE~nV~~A~~~V~~g~~~~~kAv~~qkkaRK~k~ 272 (297)
T KOG0810|consen 193 QAKQTLAEIQERHDEIKKLEKSIRELHQLFLDMAVLVESQGEMVDRIENNVENAVDYVEQGVDHLKKAVKYQKKARKWKI 272 (297)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcee
Confidence 222 344557899999999999999999999999999999999999999999999999999999999877 3555
Q ss_pred HHHHH
Q 026774 210 MCMLL 214 (233)
Q Consensus 210 ~~i~~ 214 (233)
|||++
T Consensus 273 i~ii~ 277 (297)
T KOG0810|consen 273 IIIII 277 (297)
T ss_pred eeehH
Confidence 54433
No 4
>COG5325 t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion]
Probab=99.64 E-value=1.8e-14 Score=118.74 Aligned_cols=82 Identities=18% Similarity=0.357 Sum_probs=73.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHhcCC--CchhHH
Q 026774 134 GFQRQIMREQDEGLEKLEETVVSTKHIALAVNEELDLHTRLIDDLDQHVDVTDSRLRRVQKNLAILNKRTKG--GCTCMC 211 (233)
Q Consensus 134 ~~q~~~~~~qd~~l~~l~~~v~~l~~~~~~i~~ev~~Q~~~ld~i~~~vd~~~~~l~~~~~~l~~~~~~~~~--~~~~~~ 211 (233)
.+|+-++.+.|+++.+|+.+|.+|.++|.+++.-|.+|++++|+||.++++|+..++.|++++.++..+++. +|.+||
T Consensus 184 ~~qq~l~~er~~eI~~l~~gI~Eln~IF~dL~~lV~eQG~lVdrID~Ni~~t~~n~k~A~kEL~kA~~hqrrt~k~~~~~ 263 (283)
T COG5325 184 EYQQILITERDEEIKNLARGIYELNEIFRDLGSLVGEQGELVDRIDFNIENTSDNLKNANKELEKAPAHQRRTKKCRFYL 263 (283)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHhhhhhhhhHHHHhhHHHHHHhHHHHhhhccchhhH
Confidence 456667889999999999999999999999999999999999999999999999999999999999999887 465555
Q ss_pred HHHH
Q 026774 212 MLLA 215 (233)
Q Consensus 212 i~~l 215 (233)
+++|
T Consensus 264 Llil 267 (283)
T COG5325 264 LLIL 267 (283)
T ss_pred HHHH
Confidence 5443
No 5
>KOG0811 consensus SNARE protein PEP12/VAM3/Syntaxin 7/Syntaxin 17 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.64 E-value=1.4e-13 Score=115.23 Aligned_cols=216 Identities=17% Similarity=0.239 Sum_probs=134.7
Q ss_pred CCcHHHHHHHHHHHHHHHHHhhHhhhCC---CCCCchhHHHHHHHHHHHHHHHHhHHHHHHHHhcCCCCCCCCHHHHHHH
Q 026774 5 SDSWIKEYNEAIKLADDINGMISERSSM---PASGPESQRHASAIRRKITILGTRLDSLQSLLSKLPGKQPISEKEMNRR 81 (233)
Q Consensus 5 ~D~~~~~~~ev~~~l~~i~~~i~~r~~~---~~~~~e~~~~~~~Ir~~l~~l~~~l~~L~~~l~~~~~~~~~~~~E~~~R 81 (233)
..+|-....++...+..+.......... ..+..+..++...+..........++++...++......+ +.+.+..
T Consensus 16 ~~~~~~l~~~i~~~i~~i~~~~~~l~r~~~~lgt~~ds~~lr~kl~~~~~~~~~~vkdt~~~lke~~~~~~--~~~~~~~ 93 (269)
T KOG0811|consen 16 PFDFQQLAQEIAANIQRINQQVLSLLRFLNSLGTKSDSPELRDKLHQERLNANQLVKDTSALLKEIDTLRL--ESDLRQL 93 (269)
T ss_pred CCcHhHHHHHHHHHHHHHhHHHHHHHHHHHHcCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--hhHHHHH
Confidence 4568888889998888888776544432 2222233444455555555555566666565543322211 4555666
Q ss_pred HHHHHHHHHHHHHHHHHhcccc--ccCCCC-cC---CCCCC-Chh-hhhc----------------ccCCCchhHHHHHH
Q 026774 82 KDMLANLRSKVNQMASTLNMSN--FANRDS-LL---GPEIK-SAD-VMNR----------------ATGLDNQGLVGFQR 137 (233)
Q Consensus 82 ~~~~~~l~~~l~~l~~~~~~~~--~~~r~~-l~---~~~~~-~~~-e~~~----------------~~~~~~~~~~~~q~ 137 (233)
+...+.|...+....+.|...+ .+.+.. -+ +...+ +.+ ++.+ ....+++ .+.++.
T Consensus 94 k~~~~kL~~ef~~~l~efq~vQrk~ae~ek~~~~a~~s~~s~~~~~~~~~~~~~~~~~~~~~~q~e~~~q~~e-~~~~~~ 172 (269)
T KOG0811|consen 94 KIQLDKLVDEFSAALKEFQKVQRKSAEREKIPMVARGSQNSQQLDEESPRVDELSNNGSQSQQQLEEQAQDNE-ILEYQL 172 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHhhcccccccccccchhhhhhhhhhhhhhccchhhhhHHHHHHhhhh-hhhhhH
Confidence 6777777777766666664311 111110 00 11101 000 0000 0011111 122455
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHH
Q 026774 138 QIMREQDEGLEKLEETVVSTKHIALAVNEELDLHTRLIDDLDQHVDVTDSRLRRVQKNLAILNKRTKGGCTCMCMLLAVI 217 (233)
Q Consensus 138 ~~~~~qd~~l~~l~~~v~~l~~~~~~i~~ev~~Q~~~ld~i~~~vd~~~~~l~~~~~~l~~~~~~~~~~~~~~~i~~l~i 217 (233)
.++++.++.+.+|+..|..+++||.+++..|.+|++++|.|+++|++|...+..|+..|.++.++.+...++.|++++|+
T Consensus 173 ~~ieeR~q~I~~lE~dI~dvN~IFkdL~~lV~eQG~~VDsIe~nve~a~~nveqg~~~L~kA~~yq~~~~k~~~~ll~v~ 252 (269)
T KOG0811|consen 173 DLIEEREQAIEQLEADIIDVNEIFKDLGSLVHEQGELVDSIEANVENASVNVEQGTENLRKAAKYQRKARKKKCILLLVG 252 (269)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhhhhHHH
Confidence 67788899999999999999999999999999999999999999999999999999999999999887444445544443
Q ss_pred HHHHHH
Q 026774 218 GIVVLV 223 (233)
Q Consensus 218 ~lv~l~ 223 (233)
++++++
T Consensus 253 ~~v~li 258 (269)
T KOG0811|consen 253 GPVGLI 258 (269)
T ss_pred HHHHHH
Confidence 333333
No 6
>KOG0812 consensus SNARE protein SED5/Syntaxin 5 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.61 E-value=3.5e-13 Score=111.44 Aligned_cols=203 Identities=17% Similarity=0.221 Sum_probs=142.3
Q ss_pred cHHHHHHHHHHHHHHHHHhhHhhhCC------CCCCc-hhHHHHHHHHHHHHHHHHhHHHHHHHHhcCCCCCCCCH-HHH
Q 026774 7 SWIKEYNEAIKLADDINGMISERSSM------PASGP-ESQRHASAIRRKITILGTRLDSLQSLLSKLPGKQPISE-KEM 78 (233)
Q Consensus 7 ~~~~~~~ev~~~l~~i~~~i~~r~~~------~~~~~-e~~~~~~~Ir~~l~~l~~~l~~L~~~l~~~~~~~~~~~-~E~ 78 (233)
.|......|-..+.+.-.++++...+ .+..+ +..+++.-|++.+..+.+.+.+|.+.....+ +.+. .-.
T Consensus 42 eF~~~A~~Ig~~is~T~~kl~kLa~lAKrks~f~Dr~VeI~eLT~iikqdi~sln~~i~~Lqei~~~~g---n~s~~~~~ 118 (311)
T KOG0812|consen 42 EFNKKASRIGKEISQTGAKLEKLAQLAKRKSLFDDRPVEIQELTFIIKQDITSLNSQIAQLQEIVKANG---NLSNKQLV 118 (311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcchhhHHHHHHHhcchHHHHHHHHHHHHHHHHhc---cccchHhh
Confidence 47788888888888777777554433 22233 7789999999999999999999999874333 2443 335
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcc---------ccccCCCCcCCCC--C-------------CCh-------hhhh-----
Q 026774 79 NRRKDMLANLRSKVNQMASTLNM---------SNFANRDSLLGPE--I-------------KSA-------DVMN----- 122 (233)
Q Consensus 79 ~~R~~~~~~l~~~l~~l~~~~~~---------~~~~~r~~l~~~~--~-------------~~~-------~e~~----- 122 (233)
..-++.|..|..++..+...|.. ....+|.+.|..+ + .|+ ++.+
T Consensus 119 ~Hs~~vV~~Lqs~la~is~~fk~VLE~Rtenmka~k~R~dkfs~~~a~~~a~p~~n~~a~~~~~~~l~~~~~~~sq~~~~ 198 (311)
T KOG0812|consen 119 QHSKNVVVSLQSKLANISKDFKDVLEIRTENMKAVKNRRDKFSASYASLNANPVSNSAARLHPLKLLVDPKDEASQDVES 198 (311)
T ss_pred hhhHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhHHHHhccccCCCCCcccCcccccCCchhhhcCchhhccccccc
Confidence 66788999999988877776642 0123343333211 0 011 0000
Q ss_pred -cccCCCchhHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHH
Q 026774 123 -RATGLDNQGLVGFQRQIMREQDE-------GLEKLEETVVSTKHIALAVNEELDLHTRLIDDLDQHVDVTDSRLRRVQK 194 (233)
Q Consensus 123 -~~~~~~~~~~~~~q~~~~~~qd~-------~l~~l~~~v~~l~~~~~~i~~ev~~Q~~~ld~i~~~vd~~~~~l~~~~~ 194 (233)
+..+.++.+ ++|..+++++|+ .+..|+.+|.+|.+||.++...|.+|++++.+||.+||.+.-.+..|.+
T Consensus 199 ln~gd~~~~q--qqQm~ll~es~~Y~Q~R~~~~q~IEstIsElG~IF~QLA~mVseQ~E~i~RID~nv~ds~lnI~gA~~ 276 (311)
T KOG0812|consen 199 LNMGDSSNPQ--QQQMALLDESDEYVQERAKTMQNIESTISELGGIFQQLASMVSEQEETIQRIDDNVDDSDLNIEGAHS 276 (311)
T ss_pred ccccCCCCCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhhhhHHHHH
Confidence 011111211 444556666654 5789999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCC-CchhHHHHH
Q 026774 195 NLAILNKRTKG-GCTCMCMLL 214 (233)
Q Consensus 195 ~l~~~~~~~~~-~~~~~~i~~ 214 (233)
.|.+.....++ ||.+.-||.
T Consensus 277 ellKy~e~vSSNRwLmvkiF~ 297 (311)
T KOG0812|consen 277 ELLKYFERVSSNRWLMVKIFG 297 (311)
T ss_pred HHHHHHHHhccchHHHHHHHH
Confidence 99999999777 666555543
No 7
>KOG3385 consensus V-SNARE [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.52 E-value=5.6e-14 Score=101.06 Aligned_cols=65 Identities=26% Similarity=0.457 Sum_probs=61.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHhcC
Q 026774 140 MREQDEGLEKLEETVVSTKHIALAVNEELDLHTRLIDDLDQHVDVTDSRLRRVQKNLAILNKRTK 204 (233)
Q Consensus 140 ~~~qd~~l~~l~~~v~~l~~~~~~i~~ev~~Q~~~ld~i~~~vd~~~~~l~~~~~~l~~~~~~~~ 204 (233)
-.|.|+.++.|.+.|..||.++.+|++||+.||++||.+++++|+|...|..++.+++.+.+..+
T Consensus 31 e~ENee~~e~L~~kV~aLKsLs~dIg~Ev~~qnklld~mdddfdsts~~L~gtm~r~~~~ar~sg 95 (118)
T KOG3385|consen 31 ERENEEAAESLQQKVKALKSLSLDIGDEVRTQNKLLDGMDDDFDSTSGFLSGTMGRLKTMARRSG 95 (118)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhccchhhhHHHHHHHHHHHHHHHhcCC
Confidence 36788999999999999999999999999999999999999999999999999999999999833
No 8
>PF05739 SNARE: SNARE domain; InterPro: IPR000727 The process of vesicular fusion with target membranes depends on a set of SNAREs (SNAP-Receptors), which are associated with the fusing membranes [, ]. Target SNAREs (t-SNAREs) are localised on the target membrane and belong to two different families, the syntaxin-like family and the SNAP-25 like family. One member of each family, together with a v-SNARE localised on the vesicular membrane, are required for fusion. The Syntaxins are type-I transmembrane proteins that contain several regions with coiled-coil propensity in their cytosolic part, the SNARE motif. SNAP-25 (IPR000928 from INTERPRO) is a protein consisting of two coiled-coil regions, which is associated with the membrane by lipid anchors. SNARE motifs assemble into parallel four helix bundles stabilised by the burial of these hydrophobic helix faces in the bundle core. Monomeric SNARE motifs are disordered so this assembly reaction is accompanied by a dramatic increase in alpha-helical secondary structure []. The parallel arrangement of SNARE motifs within complexes bring the transmembrane anchors, and the two membranes, into close proximity. Recently, it was shown that the two coiled-coil regions of SNAP-25 and one of the coiled-coil regions of the syntaxins are related []. This domain is found in both Syntaxin and SNAP-25 families as well as in other proteins.; GO: 0005515 protein binding; PDB: 1URQ_B 3RL0_R 1HVV_B 1SFC_B 1N7S_B 3IPD_B 3C98_B 3HD7_F 3RK2_B 1KIL_B ....
Probab=99.50 E-value=2.1e-13 Score=90.42 Aligned_cols=62 Identities=26% Similarity=0.461 Sum_probs=60.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHhc
Q 026774 142 EQDEGLEKLEETVVSTKHIALAVNEELDLHTRLIDDLDQHVDVTDSRLRRVQKNLAILNKRT 203 (233)
Q Consensus 142 ~qd~~l~~l~~~v~~l~~~~~~i~~ev~~Q~~~ld~i~~~vd~~~~~l~~~~~~l~~~~~~~ 203 (233)
++|+.|+.|+.+|.+|+++|.+|+.||++|+++||+|+.+|+.|..+|..+++++.++.+++
T Consensus 1 e~d~~l~~l~~~i~~l~~~~~~i~~ev~~Q~~~ld~i~~~vd~~~~~l~~~~~~l~ka~~~~ 62 (63)
T PF05739_consen 1 ERDEELDELEQSIQELKQMFQDIGEEVEEQNEMLDRIEDNVDRANENLKKGNKKLKKALKYQ 62 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHCHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 58999999999999999999999999999999999999999999999999999999999875
No 9
>PF09177 Syntaxin-6_N: Syntaxin 6, N-terminal; InterPro: IPR015260 Members of this entry, which are found in the amino terminus of various SNARE proteins, adopt a structure consisting of an antiparallel three-helix bundle. Their exact function has not been determined, though it is known that they regulate the SNARE motif, as well as mediate various protein-protein interactions involved in membrane-transport []. ; GO: 0048193 Golgi vesicle transport, 0016020 membrane; PDB: 1LVF_B 2C5I_T 2C5J_A 2C5K_T 4DND_A.
Probab=99.42 E-value=7.8e-13 Score=95.28 Aligned_cols=91 Identities=20% Similarity=0.362 Sum_probs=81.3
Q ss_pred CcHHHHHHHHHHHHHHHHHhhHhhhCCCCCCc---hhHHHHHHHHHHHHHHHHhHHHHHHHH---hcCCCCCCCCHHHHH
Q 026774 6 DSWIKEYNEAIKLADDINGMISERSSMPASGP---ESQRHASAIRRKITILGTRLDSLQSLL---SKLPGKQPISEKEMN 79 (233)
Q Consensus 6 D~~~~~~~ev~~~l~~i~~~i~~r~~~~~~~~---e~~~~~~~Ir~~l~~l~~~l~~L~~~l---~~~~~~~~~~~~E~~ 79 (233)
|||+.+.++|...+..++..+..|..+...+. +...+..+++..+..++++|.+|++.+ +++|.+|++++.|+.
T Consensus 1 DPF~~v~~ev~~sl~~l~~~~~~~~~~~~~~~~~~e~~~~~~eL~~~l~~ie~~L~DL~~aV~ive~np~kF~l~~~Ei~ 80 (97)
T PF09177_consen 1 DPFFVVKDEVQSSLDRLESLYRRWQRLRSDTSSSEELKWLKRELRNALQSIEWDLEDLEEAVRIVEKNPSKFNLSEEEIS 80 (97)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHHHHHTTHCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHT-HHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHHHHhcccCCCcHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccccCCCHHHHH
Confidence 89999999999999999999999998665443 677899999999999999999999997 468889999999999
Q ss_pred HHHHHHHHHHHHHHHHH
Q 026774 80 RRKDMLANLRSKVNQMA 96 (233)
Q Consensus 80 ~R~~~~~~l~~~l~~l~ 96 (233)
.|+.++..++.++.+++
T Consensus 81 ~Rr~fv~~~~~~i~~~k 97 (97)
T PF09177_consen 81 RRRQFVSAIRNQIKQMK 97 (97)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcC
Confidence 99999999999998875
No 10
>COG5074 t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion]
Probab=99.33 E-value=7.5e-11 Score=94.99 Aligned_cols=193 Identities=14% Similarity=0.190 Sum_probs=117.7
Q ss_pred HHHHHHHHHHHHHHHHHhhHhhhCCCCC-Cch-hHHHHHHHHHHHHHHHHhHHHHHHHHhcC----CCCCCCCHHHHHHH
Q 026774 8 WIKEYNEAIKLADDINGMISERSSMPAS-GPE-SQRHASAIRRKITILGTRLDSLQSLLSKL----PGKQPISEKEMNRR 81 (233)
Q Consensus 8 ~~~~~~ev~~~l~~i~~~i~~r~~~~~~-~~e-~~~~~~~Ir~~l~~l~~~l~~L~~~l~~~----~~~~~~~~~E~~~R 81 (233)
|...++.+.+.+..+...+.+-+.++.. -++ .......+++.|.....+-.+|+..+++. ... ++ .+..|
T Consensus 23 f~~~i~si~~n~s~~e~~i~qi~~~h~d~L~Ev~e~~~~~~~~~ldnf~s~t~~Lq~~~k~di~~~e~~-~i---hl~~k 98 (280)
T COG5074 23 FMNKILSINKNLSVYEKEINQIDNLHKDLLTEVFEEQSRKLRRSLDNFSSQTTDLQRNLKKDIKSAERD-GI---HLANK 98 (280)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhc-cc---chhhH
Confidence 4445666666666555554433322111 112 23467889999999999999998887532 111 11 23455
Q ss_pred HHHHHHHHHHHHHHHHHhccccc--------cCCCCcC--CCCCCChhhhhcccCC-CchhHHH-----------HHH--
Q 026774 82 KDMLANLRSKVNQMASTLNMSNF--------ANRDSLL--GPEIKSADVMNRATGL-DNQGLVG-----------FQR-- 137 (233)
Q Consensus 82 ~~~~~~l~~~l~~l~~~~~~~~~--------~~r~~l~--~~~~~~~~e~~~~~~~-~~~~~~~-----------~q~-- 137 (233)
+.+-+++++++-++-..|+.... .-|.++. .|.. ..++.+...+- +..++.. -+-
T Consensus 99 ~aQae~~r~Kf~~~I~~yr~i~~~yree~~e~~rrQy~Ia~P~A-TEdeve~aInd~nG~qvfsqalL~anr~geAktaL 177 (280)
T COG5074 99 QAQAENVRQKFLKLIQDYRIIDSNYREEEKEQARRQYIIAQPEA-TEDEVEAAINDVNGQQVFSQALLNANRRGEAKTAL 177 (280)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhhcCCcc-chHHHHHHhcccchHHHHHHHHHhcCccchHHHHH
Confidence 66666666666555544432211 1122221 1111 11121111111 1222211 011
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHhcCC
Q 026774 138 QIMREQDEGLEKLEETVVSTKHIALAVNEELDLHTRLIDDLDQHVDVTDSRLRRVQKNLAILNKRTKG 205 (233)
Q Consensus 138 ~~~~~qd~~l~~l~~~v~~l~~~~~~i~~ev~~Q~~~ld~i~~~vd~~~~~l~~~~~~l~~~~~~~~~ 205 (233)
...+..-+.|-.|+.++..|-+++++|..+|.+|.++.|-|+.++..++..+..++..+.+++++.+.
T Consensus 178 ~Evq~Rh~~ikkiEkt~ael~qLfndm~~~V~eq~e~Vd~I~~~~~~~~~n~~~g~~h~d~AvksaRa 245 (280)
T COG5074 178 AEVQARHQEIKKIEKTMAELTQLFNDMEELVIEQQENVDVIDKNVEDAQENVEQGVGHTDKAVKSARA 245 (280)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHhhHhhHHhhHHHhhhhHHHHHHHHHH
Confidence 12334557899999999999999999999999999999999999999999999999999999988654
No 11
>cd00193 t_SNARE Soluble NSF (N-ethylmaleimide-sensitive fusion protein)-Attachment protein (SNAP) REceptor domain; these alpha-helical motifs form twisted and parallel heterotetrameric helix bundles; the core complex contains one helix from a protein that is anchored in the vesicle membrane (synaptobrevin), one helix from a protein of the target membrane (syntaxin), and two helices from another protein anchored in the target membrane (SNAP-25); their interaction forms a core which is composed of a polar zero layer, a flanking leucine-zipper layer acts as a water tight shield to isolate ionic interactions in the zero layer from the surrounding solvent
Probab=99.24 E-value=4.3e-11 Score=78.10 Aligned_cols=59 Identities=32% Similarity=0.519 Sum_probs=56.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHH
Q 026774 141 REQDEGLEKLEETVVSTKHIALAVNEELDLHTRLIDDLDQHVDVTDSRLRRVQKNLAIL 199 (233)
Q Consensus 141 ~~qd~~l~~l~~~v~~l~~~~~~i~~ev~~Q~~~ld~i~~~vd~~~~~l~~~~~~l~~~ 199 (233)
+++++.|+.|+.+|.+++++|.+|+.+|.+|+++||+|+++++.+..+++.+++++.++
T Consensus 2 ~e~~~~l~~l~~~i~~l~~l~~~i~~~v~~Q~~~ld~i~~~~~~~~~~~~~~~~~l~ka 60 (60)
T cd00193 2 QERDEELEQLEASIGELKQIFLDLGTEVEEQGELLDRIEDNVDNADVNVKRANKRLKKA 60 (60)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 57899999999999999999999999999999999999999999999999999999763
No 12
>smart00397 t_SNARE Helical region found in SNAREs. All alpha-helical motifs that form twisted and parallel four-helix bundles in target soluble N-ethylmaleimide-sensitive factor (NSF) attachment protein (SNAP) receptor proteins. This motif found in "Q-SNAREs".
Probab=99.21 E-value=1.6e-10 Score=76.78 Aligned_cols=64 Identities=31% Similarity=0.472 Sum_probs=60.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHH
Q 026774 136 QRQIMREQDEGLEKLEETVVSTKHIALAVNEELDLHTRLIDDLDQHVDVTDSRLRRVQKNLAIL 199 (233)
Q Consensus 136 q~~~~~~qd~~l~~l~~~v~~l~~~~~~i~~ev~~Q~~~ld~i~~~vd~~~~~l~~~~~~l~~~ 199 (233)
+.+++.++|+.|+.|+.++.+++++|.+|+.+|.+|+++||+|+++++.+..++..++++++++
T Consensus 3 ~~~~~~~~~~~l~~l~~~i~~l~~l~~~i~~~v~~Q~~~ld~i~~~~d~~~~~~~~~~~~l~~~ 66 (66)
T smart00397 3 ADQMEEERDEELEQLEKSIGELKQIFLDMGTELEEQGEQLDRIEDNVDDADVNLKKANKRLKKA 66 (66)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcC
Confidence 3467899999999999999999999999999999999999999999999999999999998763
No 13
>KOG1666 consensus V-SNARE [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.98 E-value=3.2e-07 Score=73.47 Aligned_cols=187 Identities=22% Similarity=0.331 Sum_probs=114.9
Q ss_pred CCCCCCcHHHHHHHHHHHHHHHHHhhHhhhCCCCCCchhHHHHHHHHHHHHHHHHhHHHHHHHHhcCCCCCCCC-HHHHH
Q 026774 1 MASASDSWIKEYNEAIKLADDINGMISERSSMPASGPESQRHASAIRRKITILGTRLDSLQSLLSKLPGKQPIS-EKEMN 79 (233)
Q Consensus 1 m~s~~D~~~~~~~ev~~~l~~i~~~i~~r~~~~~~~~e~~~~~~~Ir~~l~~l~~~l~~L~~~l~~~~~~~~~~-~~E~~ 79 (233)
|+|--+.|.+.|..+ ..+|.+.+.+-..++ +.+....-.+|...+..+...|.+++..++..|..+.-+ ..-++
T Consensus 1 ms~~fe~yEqqy~~l---~a~it~k~~~~~~~~--~~ekk~~l~~i~~~leEa~ell~qMdlEvr~lp~~~Rs~~~~KlR 75 (220)
T KOG1666|consen 1 MSSLFEGYEQQYREL---SAEITKKIGRALSLP--GSEKKQLLSEIDSKLEEANELLDQMDLEVRELPPNFRSSYLSKLR 75 (220)
T ss_pred CchHHHHHHHHHHHH---HHHHHHhHHHHhcCC--chHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCchhhhHHHHHHH
Confidence 433334455555444 467777777655554 334455678999999999999999999888887654111 23334
Q ss_pred HHHHHHHHHHHHHHHHHHHhccccccCCCCcCCCCCCChhhhhcccCCCchhHHHHHH-HH------HHHHHHHHHHHHH
Q 026774 80 RRKDMLANLRSKVNQMASTLNMSNFANRDSLLGPEIKSADVMNRATGLDNQGLVGFQR-QI------MREQDEGLEKLEE 152 (233)
Q Consensus 80 ~R~~~~~~l~~~l~~l~~~~~~~~~~~r~~l~~~~~~~~~e~~~~~~~~~~~~~~~q~-~~------~~~qd~~l~~l~~ 152 (233)
..+.-+..++.+++...+. ......+..+++.. ..+..-..+-|+ ++ +..--+.|.+=+.
T Consensus 76 ~yksdl~~l~~e~k~~~~~--~~~~~~rde~~~~~-----------~add~~~~~dQR~rLl~nTerLeRst~rl~ds~R 142 (220)
T KOG1666|consen 76 EYKSDLKKLKRELKRTTSR--NLNAGDRDELLEAL-----------EADDQNISADQRARLLQNTERLERSTDRLKDSQR 142 (220)
T ss_pred HHHHHHHHHHHHHHHhhcc--ccccchHHHHHhhh-----------hccccccchhHHHHHHhhhHHHHHhHHHHHHHHH
Confidence 4444444444444433300 00111122221110 001100012222 12 2233345667777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHhcCC
Q 026774 153 TVVSTKHIALAVNEELDLHTRLIDDLDQHVDVTDSRLRRVQKNLAILNKRTKG 205 (233)
Q Consensus 153 ~v~~l~~~~~~i~~ev~~Q~~~ld~i~~~vd~~~~~l~~~~~~l~~~~~~~~~ 205 (233)
.+.+..+||..|-.++..|.+.|.+--.-.-.|++.|.++.+-++.+.++.-.
T Consensus 143 ia~ETEqIG~~IL~dL~~QRe~L~rar~rL~~td~~lgkS~kiL~tM~RR~~~ 195 (220)
T KOG1666|consen 143 IALETEQIGSEILEDLHGQREQLERARERLRETDANLGKSRKILTTMTRRLIR 195 (220)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhhhhHHHHHHHHHHHHHHH
Confidence 88899999999999999999999999999999999999999999999887544
No 14
>PF09753 Use1: Membrane fusion protein Use1; InterPro: IPR019150 This entry represents a family of proteins, approximately 300 residues in length, involved in vesicle transport. They have a single C-terminal transmembrane domain and a SNARE [soluble NSF (N-ethylmaleimide-sensitive fusion protein) attachment protein receptor] domain of approximately 60 residues. The SNARE domains are essential for membrane fusion and are conserved from yeasts to humans. Use1 is one of the three protein subunits that make up the SNARE complex and it is specifically required for Golgi-endoplasmic reticulum retrograde transport [].
Probab=98.89 E-value=1.7e-06 Score=72.88 Aligned_cols=89 Identities=18% Similarity=0.324 Sum_probs=72.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHH
Q 026774 141 REQDEGLEKLEETVVSTKHIALAVNEELDLHTRLIDDLDQHVDVTDSRLRRVQKNLAILNKRTKGGCTCMCMLLAVIGIV 220 (233)
Q Consensus 141 ~~qd~~l~~l~~~v~~l~~~~~~i~~ev~~Q~~~ld~i~~~vd~~~~~l~~~~~~l~~~~~~~~~~~~~~~i~~l~i~lv 220 (233)
..||+-.++|..-...||+-+..++.-|.+.+..|+..+..+|+....++.+..+++...++. |+||.++++ ++++
T Consensus 163 ~~QE~L~~em~~La~~LK~~s~~~~~~l~~D~~~L~~~~~~~d~n~~~l~~~~~rl~~~~~~~---~~~~~~~~i-~~v~ 238 (251)
T PF09753_consen 163 NLQEDLTEEMLSLARQLKENSLAFSQILKEDNKVLDRTEEGLDRNLSSLKRESKRLKEHSSKS---WGCWTWLMI-FVVI 238 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---ccHHHHHHH-HHHH
Confidence 457778899999999999999999999999999999999999999999999999999986643 334433333 3455
Q ss_pred HHHHHHHHHHhhC
Q 026774 221 VLVVVIYMLIKYL 233 (233)
Q Consensus 221 ~l~v~i~~~~k~~ 233 (233)
++||+.|+++|+|
T Consensus 239 ~~Fi~mvl~iri~ 251 (251)
T PF09753_consen 239 IVFIMMVLFIRIF 251 (251)
T ss_pred HHHHHHHHHheeC
Confidence 5666777777765
No 15
>KOG3065 consensus SNAP-25 (synaptosome-associated protein) component of SNARE complex [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.80 E-value=1.5e-08 Score=85.25 Aligned_cols=62 Identities=26% Similarity=0.379 Sum_probs=58.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHH
Q 026774 139 IMREQDEGLEKLEETVVSTKHIALAVNEELDLHTRLIDDLDQHVDVTDSRLRRVQKNLAILN 200 (233)
Q Consensus 139 ~~~~qd~~l~~l~~~v~~l~~~~~~i~~ev~~Q~~~ld~i~~~vd~~~~~l~~~~~~l~~~~ 200 (233)
.-.++|+.|++|+..+++||.||.+||.||+.||+.||+|++++|....+|..+++|+++++
T Consensus 212 ~edeiD~NL~qis~~lg~LK~mA~dmg~Eie~Qn~~Ld~I~~k~d~~d~~v~~~n~R~~kLl 273 (273)
T KOG3065|consen 212 AEDEIDENLDQLSAILGRLKNMALDMGSEIESQNERLDRIEDKVDRLDLRVDKANKRAKKLL 273 (273)
T ss_pred hhhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhHHHHHHHhhhhHHHHHHHHHHhcC
Confidence 44589999999999999999999999999999999999999999999999999999999863
No 16
>KOG3251 consensus Golgi SNAP receptor complex member [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.74 E-value=4.1e-06 Score=67.43 Aligned_cols=186 Identities=15% Similarity=0.189 Sum_probs=124.5
Q ss_pred HHHHHHHHHHHHHHHhhHhhhCCCCCCchhHHHHHHHHHHHHHHHHhHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHH
Q 026774 10 KEYNEAIKLADDINGMISERSSMPASGPESQRHASAIRRKITILGTRLDSLQSLLSKLPGKQPISEKEMNRRKDMLANLR 89 (233)
Q Consensus 10 ~~~~ev~~~l~~i~~~i~~r~~~~~~~~e~~~~~~~Ir~~l~~l~~~l~~L~~~l~~~~~~~~~~~~E~~~R~~~~~~l~ 89 (233)
..|..+.+.+++++..+.+.+....+ .+......+|.+.+.++...+..++..+.+.|.. +..-.+++ +..++
T Consensus 3 ~ly~~t~~~~~k~q~~l~rlE~~~~~-~e~~~v~~~i~~sI~~~~s~~~rl~~~~~~epp~----~rq~~rlr--~dQl~ 75 (213)
T KOG3251|consen 3 ALYQSTNRQLDKLQRGLIRLERTIKT-QEVSAVENSIQRSIDQYASRCQRLDVLVSKEPPK----SRQAARLR--VDQLL 75 (213)
T ss_pred hHHHHHHHHHHHHHHHHHHHHccccc-cchHHHHHHHHHhHHHHHHHHHHHHhHhhcCCCC----cHHHHHHH--HHHHH
Confidence 46788888899999999877764432 4667788999999999999999999998888764 22222222 55555
Q ss_pred HHHHHHHHHhccc---------cccCCCCcCCCCCCChhhhhcccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026774 90 SKVNQMASTLNMS---------NFANRDSLLGPEIKSADVMNRATGLDNQGLVGFQRQIMREQDEGLEKLEETVVSTKHI 160 (233)
Q Consensus 90 ~~l~~l~~~~~~~---------~~~~r~~l~~~~~~~~~e~~~~~~~~~~~~~~~q~~~~~~qd~~l~~l~~~v~~l~~~ 160 (233)
..+..+...++.. .+..|..+++..- ++.++.-..|+|. .++.+ ..|..-+..+..+-..
T Consensus 76 ~d~~~l~~~l~~~~~R~~~r~~~~~er~~lL~~~~-~~~~~~~~~~~D~--el~~~--------d~l~~s~~~lDd~l~~ 144 (213)
T KOG3251|consen 76 EDVEHLQTSLRTSMNRNNRREQQARERVELLDRRF-TNGATGTSIPFDE--ELQEN--------DSLKRSHNMLDDLLES 144 (213)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCC-CCCCccCCCcchH--HHHhh--------hHHHHHHhhHHHHHHH
Confidence 5665555544321 1222444444321 1111111122221 12222 3455556666666888
Q ss_pred HHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHhcCC-CchhHHHH
Q 026774 161 ALAVNEELDLHTRLIDDLDQHVDVTDSRLRRVQKNLAILNKRTKG-GCTCMCML 213 (233)
Q Consensus 161 ~~~i~~ev~~Q~~~ld~i~~~vd~~~~~l~~~~~~l~~~~~~~~~-~~~~~~i~ 213 (233)
|.+|-+-+.+|+..|..+...|-.....|.-++.-|.-+.++... ++.+||-+
T Consensus 145 G~~ile~l~~Q~~~L~~~~~ki~~~~ntLGlSn~ti~lIeRR~~~Dk~iF~~G~ 198 (213)
T KOG3251|consen 145 GSAILENLVEQRLTLKGTQKKILDILNTLGLSNQTIRLIERRVREDKIIFYGGV 198 (213)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHhhHHHHHHHH
Confidence 999999999999999999999999999999999999999998877 55555444
No 17
>KOG3208 consensus SNARE protein GS28 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.68 E-value=6e-06 Score=66.49 Aligned_cols=214 Identities=18% Similarity=0.299 Sum_probs=138.0
Q ss_pred CCCCcHHHHHHHHHHHHHHHHHhhHhhhCCCCC---------Cc------hhHHHHHHHHHHHHHHHHhHHHHHHHHhcC
Q 026774 3 SASDSWIKEYNEAIKLADDINGMISERSSMPAS---------GP------ESQRHASAIRRKITILGTRLDSLQSLLSKL 67 (233)
Q Consensus 3 s~~D~~~~~~~ev~~~l~~i~~~i~~r~~~~~~---------~~------e~~~~~~~Ir~~l~~l~~~l~~L~~~l~~~ 67 (233)
+.+..|..........-+++..++....++..+ ++ ....+..+|...|.++..-.+.+.+. ...
T Consensus 2 ~~~s~we~LRkqArslE~~ld~kL~syskl~as~~gg~~~~~s~~~~~~~s~ks~~~eie~LLeql~~vndsm~~~-~~s 80 (231)
T KOG3208|consen 2 GSSSSWEALRKQARSLENQLDSKLVSYSKLGASTHGGYDIDTSPLSGSDRSFKSLENEIEGLLEQLQDVNDSMNDC-ASS 80 (231)
T ss_pred CCcchHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCCcccccCcCcchhhhHHHHHHHHHHHHHHHHHHHhh-ccC
Confidence 356679999999999999999999877766544 11 12245666666666666555555441 112
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCCcCCCCCCChhhhhcccCCCchhHHHHHHHHHHHHHHHH
Q 026774 68 PGKQPISEKEMNRRKDMLANLRSKVNQMASTLNMSNFANRDSLLGPEIKSADVMNRATGLDNQGLVGFQRQIMREQDEGL 147 (233)
Q Consensus 68 ~~~~~~~~~E~~~R~~~~~~l~~~l~~l~~~~~~~~~~~r~~l~~~~~~~~~e~~~~~~~~~~~~~~~q~~~~~~qd~~l 147 (233)
|....-...-+++.++.+....+++..+...++.. ..+..|++.............++.+.+ ..++|. ..|
T Consensus 81 ~a~~aa~~htL~RHrEILqdy~qef~rir~n~~a~--~e~~~Ll~s~~~~~~~~~~~~~~~~~e------~~lkE~-~~i 151 (231)
T KOG3208|consen 81 PANSAAVMHTLQRHREILQDYTQEFRRIRSNIDAK--RERESLLESVRADISSYPSASGFNRGE------MYLKEH-DHI 151 (231)
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHhhhhccCCccCCCchHH------HHHHHh-ccc
Confidence 32211123557889999999999999988877532 122233321100000000112222221 223333 356
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHH
Q 026774 148 EKLEETVVSTKHIALAVNEELDLHTRLIDDLDQHVDVTDSRLRRVQKNLAILNKRTKGGCTCMCMLLAVIGIVVLVVVIY 227 (233)
Q Consensus 148 ~~l~~~v~~l~~~~~~i~~ev~~Q~~~ld~i~~~vd~~~~~l~~~~~~l~~~~~~~~~~~~~~~i~~l~i~lv~l~v~i~ 227 (233)
+.=...|.++-++|..-.+-+..|+.++.++...|.++..+....+.-+.++..+.+. --.|+-+||.++++|++||
T Consensus 152 n~s~~~vde~Is~A~aTre~l~~Qrs~l~~i~~k~~~~a~r~P~IN~Ll~kIk~kkrr---dslILa~Vis~C~llllfy 228 (231)
T KOG3208|consen 152 NNSIRLVDELISQAQATRENLHSQRSVLGGINNKVNNIANRFPAINQLLQKIKIKKRR---DSLILAAVISVCTLLLLFY 228 (231)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcchHHHHHHHHHHHhhh---hhHHHHHHHHHHHHHHHHH
Confidence 6666667777888999999999999999999999999999999999999888776332 1244556677778888888
Q ss_pred HH
Q 026774 228 ML 229 (233)
Q Consensus 228 ~~ 229 (233)
++
T Consensus 229 ~~ 230 (231)
T KOG3208|consen 229 WI 230 (231)
T ss_pred Hh
Confidence 75
No 18
>KOG2678 consensus Predicted membrane protein [Function unknown]
Probab=97.95 E-value=0.0002 Score=57.87 Aligned_cols=81 Identities=22% Similarity=0.226 Sum_probs=63.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHH
Q 026774 145 EGLEKLEETVVSTKHIALAVNEELDLHTRLIDDLDQHVDVTDSRLRRVQKNLAILNKRTKGGCTCMCMLLAVIGIVVLVV 224 (233)
Q Consensus 145 ~~l~~l~~~v~~l~~~~~~i~~ev~~Q~~~ld~i~~~vd~~~~~l~~~~~~l~~~~~~~~~~~~~~~i~~l~i~lv~l~v 224 (233)
+-.+.+..-++-||..+...++-+.+-|..+...+..+|.....|..+..++.+.-++.+..|..|.++|++|+.+|..|
T Consensus 155 eLaesll~LArslKtnalAfqsalkeDnQvl~~~~k~~D~N~~~L~~~Serve~y~ksk~s~wf~~~miI~v~~sFVsMi 234 (244)
T KOG2678|consen 155 ELAESLLKLARSLKTNALAFQSALKEDNQVLGAAEKGIDVNSQGLMDVSERVEKYDKSKLSYWFYITMIIFVILSFVSMI 234 (244)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHhhHHHHHHHHHHHhHHHHHHHhhhHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Confidence 45567788888999999999999999999999999999999999999999999988876554555544433333333333
Q ss_pred H
Q 026774 225 V 225 (233)
Q Consensus 225 ~ 225 (233)
+
T Consensus 235 l 235 (244)
T KOG2678|consen 235 L 235 (244)
T ss_pred H
Confidence 3
No 19
>KOG0860 consensus Synaptobrevin/VAMP-like protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.65 E-value=0.0011 Score=48.49 Aligned_cols=61 Identities=23% Similarity=0.401 Sum_probs=29.6
Q ss_pred HHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHhcCC-CchhHHHHHHHHHHHHHHHHHHHHH
Q 026774 170 LHTRLIDDLDQHVDVTDSRLRRVQKNLAILNKRTKG-GCTCMCMLLAVIGIVVLVVVIYMLI 230 (233)
Q Consensus 170 ~Q~~~ld~i~~~vd~~~~~l~~~~~~l~~~~~~~~~-~~~~~~i~~l~i~lv~l~v~i~~~~ 230 (233)
+-++-|++|++..|..++.-..=.+.-.++.++.-. .|+|.+|+.++++++++++++|+++
T Consensus 54 ER~ekL~~L~drad~L~~~as~F~~~A~klkrk~wWkn~Km~~il~~v~~i~l~iiii~~~~ 115 (116)
T KOG0860|consen 54 ERGEKLDELDDRADQLQAGASQFEKTAVKLKRKMWWKNCKMRIILGLVIIILLVVIIIYIFL 115 (116)
T ss_pred HhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 344556666665555444333323333333333211 3555555555556666666666654
No 20
>KOG3894 consensus SNARE protein Syntaxin 18/UFE1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.60 E-value=0.00088 Score=57.01 Aligned_cols=85 Identities=12% Similarity=0.192 Sum_probs=71.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHH
Q 026774 140 MREQDEGLEKLEETVVSTKHIALAVNEELDLHTRLIDDLDQHVDVTDSRLRRVQKNLAILNKRTKGGCTCMCMLLAVIGI 219 (233)
Q Consensus 140 ~~~qd~~l~~l~~~v~~l~~~~~~i~~ev~~Q~~~ld~i~~~vd~~~~~l~~~~~~l~~~~~~~~~~~~~~~i~~l~i~l 219 (233)
+.++.+++..+...+-++..+=.-+.+-|-.|..-+|.|-+.+..|+..++.+|..++++...++..+.||.+++|+..+
T Consensus 227 ~n~~~devrqie~~lvEI~~Lq~ifsehvl~Q~~~Id~I~d~~~~~teNIk~gNe~irka~~~~~~~r~~~lf~llvlsf 306 (316)
T KOG3894|consen 227 LNELLDEVRQIEKRLVEISALQDIFSEHVLQQDQNIDLIHDLQSGATENIKDGNEEIRKAKRNNGGLRVFLLFFLLVLSF 306 (316)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhhhhhHHHHHHHHHhcccchhHHHHHHHHHHH
Confidence 45677888899999999999989999999999999999999999999999999999999999877767766666555444
Q ss_pred HHHHH
Q 026774 220 VVLVV 224 (233)
Q Consensus 220 v~l~v 224 (233)
++||.
T Consensus 307 ~lLFl 311 (316)
T KOG3894|consen 307 SLLFL 311 (316)
T ss_pred HHHHH
Confidence 44443
No 21
>KOG1666 consensus V-SNARE [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.45 E-value=0.018 Score=46.62 Aligned_cols=149 Identities=17% Similarity=0.237 Sum_probs=91.1
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHhcCCC-CCCCCHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCCcCCCCCCChhhh
Q 026774 43 ASAIRRKITILGTRLDSLQSLLSKLPG-KQPISEKEMNRRKDMLANLRSKVNQMASTLNMSNFANRDSLLGPEIKSADVM 121 (233)
Q Consensus 43 ~~~Ir~~l~~l~~~l~~L~~~l~~~~~-~~~~~~~E~~~R~~~~~~l~~~l~~l~~~~~~~~~~~r~~l~~~~~~~~~e~ 121 (233)
..+=+..+..+++.+++.++.|.+..- -.++++........-+.+.++.+++++..++... .+....+ +.
T Consensus 31 ~~ekk~~l~~i~~~leEa~ell~qMdlEvr~lp~~~Rs~~~~KlR~yksdl~~l~~e~k~~~--~~~~~~~-------~r 101 (220)
T KOG1666|consen 31 GSEKKQLLSEIDSKLEEANELLDQMDLEVRELPPNFRSSYLSKLREYKSDLKKLKRELKRTT--SRNLNAG-------DR 101 (220)
T ss_pred chHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCchhhhHHHHHHHHHHHHHHHHHHHHHHhh--ccccccc-------hH
Confidence 344455788899999999999876531 1237777766777788888888888888886432 1111111 00
Q ss_pred hcccCCCchhHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhH---hHHHHHHHHHHHH
Q 026774 122 NRATGLDNQGLVGFQRQIMREQDEGL----EKLEETVVSTKHIALAVNEELDLHTR-LIDDLDQ---HVDVTDSRLRRVQ 193 (233)
Q Consensus 122 ~~~~~~~~~~~~~~q~~~~~~qd~~l----~~l~~~v~~l~~~~~~i~~ev~~Q~~-~ld~i~~---~vd~~~~~l~~~~ 193 (233)
++. .. +...-.+.....|-..| +.|+.+-.+++. +.-|..|-++=+. +|.++.. ...+|.++|..+.
T Consensus 102 de~---~~-~~~add~~~~~dQR~rLl~nTerLeRst~rl~d-s~Ria~ETEqIG~~IL~dL~~QRe~L~rar~rL~~td 176 (220)
T KOG1666|consen 102 DEL---LE-ALEADDQNISADQRARLLQNTERLERSTDRLKD-SQRIALETEQIGSEILEDLHGQREQLERARERLRETD 176 (220)
T ss_pred HHH---Hh-hhhccccccchhHHHHHHhhhHHHHHhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhch
Confidence 010 01 11111222233444333 567777777765 4666677766654 7788875 5678888888888
Q ss_pred HHHHHHHHhcCC
Q 026774 194 KNLAILNKRTKG 205 (233)
Q Consensus 194 ~~l~~~~~~~~~ 205 (233)
..+.+..+.-++
T Consensus 177 ~~lgkS~kiL~t 188 (220)
T KOG1666|consen 177 ANLGKSRKILTT 188 (220)
T ss_pred hhhhHHHHHHHH
Confidence 888877766444
No 22
>PF00957 Synaptobrevin: Synaptobrevin; InterPro: IPR001388 Synaptobrevin is an intrinsic membrane protein of small synaptic vesicles [], specialised secretory organelles of neurons that actively accumulate neurotransmitters and participate in their calcium-dependent release by exocytosis. Vesicle function is mediated by proteins in their membranes, although the precise nature of the protein-protein interactions underlying this are still uncertain []. Synaptobrevin may play a role in the molecular events underlying neurotransmitter release and vesicle recycling and may be involved in the regulation of membrane flow in the nerve terminal, a process mediated by interaction with low molecular weight GTP-binding proteins []. Synaptic vesicle-associated membrane proteins (VAMPs) from Torpedo californica (Pacific electric ray) and SNC1 from yeast are related to synaptobrevin.; GO: 0016192 vesicle-mediated transport, 0016021 integral to membrane; PDB: 3EGX_C 2NUP_C 3EGD_C 2NUT_C 1IOU_A 1H8M_A 3B5N_A 3ZYM_A 2NPS_A 1SFC_E ....
Probab=97.42 E-value=0.0016 Score=45.80 Aligned_cols=46 Identities=17% Similarity=0.281 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHH
Q 026774 145 EGLEKLEETVVSTKHIALAVNEELDLHTRLIDDLDQHVDVTDSRLR 190 (233)
Q Consensus 145 ~~l~~l~~~v~~l~~~~~~i~~ev~~Q~~~ld~i~~~vd~~~~~l~ 190 (233)
+.+..+...+...+++-.+=-+.+-+-++-|+++++..+.-...-.
T Consensus 3 dkl~~i~~~v~~v~~im~~Ni~~ll~Rge~L~~L~~kt~~L~~~a~ 48 (89)
T PF00957_consen 3 DKLEQIQEQVEEVKNIMRENIDKLLERGEKLEELEDKTEELSDNAK 48 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHhH
Confidence 4455666666666665544445566677777777766554444333
No 23
>PF03908 Sec20: Sec20; InterPro: IPR005606 Sec20 is a membrane glycoprotein associated with secretory pathway.
Probab=97.07 E-value=0.023 Score=40.20 Aligned_cols=60 Identities=17% Similarity=0.206 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHhcCC
Q 026774 146 GLEKLEETVVSTKHIALAVNEELDLHTRLIDDLDQHVDVTDSRLRRVQKNLAILNKRTKG 205 (233)
Q Consensus 146 ~l~~l~~~v~~l~~~~~~i~~ev~~Q~~~ld~i~~~vd~~~~~l~~~~~~l~~~~~~~~~ 205 (233)
.|......+..--+.+..-.+++++|.+.|..+++..+.....+..+.+-++++.+....
T Consensus 9 ~L~rt~~~m~~ev~~s~~t~~~L~~Ss~~L~~~~~e~~~~~~~l~~s~~ll~~l~r~~~~ 68 (92)
T PF03908_consen 9 SLRRTRQMMAQEVERSELTLQTLEESSATLRSTNDEYDGQSSLLKKSRKLLKKLERRDKT 68 (92)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444555666677899999999999999999999999999999999998766
No 24
>KOG0810 consensus SNARE protein Syntaxin 1 and related proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.05 E-value=0.0057 Score=52.54 Aligned_cols=77 Identities=10% Similarity=0.156 Sum_probs=62.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHH
Q 026774 138 QIMREQDEGLEKLEETVVSTKHIALAVNEELDLHTRLIDDLDQHVDVTDSRLRRVQKNLAILNKRTKGGCTCMCMLLAV 216 (233)
Q Consensus 138 ~~~~~qd~~l~~l~~~v~~l~~~~~~i~~ev~~Q~~~ld~i~~~vd~~~~~l~~~~~~l~~~~~~~~~~~~~~~i~~l~ 216 (233)
.-+.+.+..|.+|++.-..+..+-..=|+.|+.=..-+.+-...|+.+.+.+++|..--+++.+. +- +.++|+++++
T Consensus 206 ~~ik~LEksi~ELhqlFlDMa~LVe~QgEmvd~IE~nV~~A~~~V~~g~~~~~kAv~~qkkaRK~-k~-i~ii~~iii~ 282 (297)
T KOG0810|consen 206 DEIKKLEKSIRELHQLFLDMAVLVESQGEMVDRIENNVENAVDYVEQGVDHLKKAVKYQKKARKW-KI-IIIIILIIII 282 (297)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc-ee-eeehHHHHHH
Confidence 45667788999999999999999999999999999999999999999999999998887777775 33 4444444443
No 25
>PF12352 V-SNARE_C: Snare region anchored in the vesicle membrane C-terminus; PDB: 1GL2_C 2NPS_C.
Probab=97.02 E-value=0.017 Score=38.04 Aligned_cols=59 Identities=20% Similarity=0.302 Sum_probs=54.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHh
Q 026774 144 DEGLEKLEETVVSTKHIALAVNEELDLHTRLIDDLDQHVDVTDSRLRRVQKNLAILNKR 202 (233)
Q Consensus 144 d~~l~~l~~~v~~l~~~~~~i~~ev~~Q~~~ld~i~~~vd~~~~~l~~~~~~l~~~~~~ 202 (233)
...|+.-...+....++|.++..++..|++.|..+...++.+...+..+++-|+.+.++
T Consensus 7 ~~~L~~s~~~~~e~~~~g~~~l~~L~~Qre~L~~~~~kl~~i~~~l~~s~~~l~~I~rR 65 (66)
T PF12352_consen 7 SDSLQRSHRMADETEEIGAATLEDLRSQREQLKRVRDKLDDIDSNLPKSNSLLKRISRR 65 (66)
T ss_dssp HCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHcc
Confidence 35788888889999999999999999999999999999999999999999999988764
No 26
>PF00804 Syntaxin: Syntaxin; InterPro: IPR006011 Syntaxins A and B are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane. Syntaxins are a family of receptors for intracellular transport vesicles. Each target membrane may be identified by a specific member of the syntaxin family []. Members of the syntaxin family [, ] have a size ranging from 30 Kd to 40 Kd; a C-terminal extremity which is highly hydrophobic and anchors the protein on the cytoplasmic surface of cellular membranes; a central, well conserved region, which seems to be in a coiled-coil conformation. ; GO: 0016020 membrane; PDB: 1S94_B 1EZ3_A 3C98_B 1BR0_A 1FIO_A 2XHE_B.
Probab=96.91 E-value=0.01 Score=42.25 Aligned_cols=90 Identities=18% Similarity=0.225 Sum_probs=66.7
Q ss_pred CcHHHHHHHHHHHHHHHHHhhHhhhCC-----CCCCc------hhHHHHHHHHHHHHHHHHhHHHHHHHHhcCCCCCCCC
Q 026774 6 DSWIKEYNEAIKLADDINGMISERSSM-----PASGP------ESQRHASAIRRKITILGTRLDSLQSLLSKLPGKQPIS 74 (233)
Q Consensus 6 D~~~~~~~ev~~~l~~i~~~i~~r~~~-----~~~~~------e~~~~~~~Ir~~l~~l~~~l~~L~~~l~~~~~~~~~~ 74 (233)
+.|+...++|...+..|+..+.+-..+ ..... +...++.+|...+..+...|..|+....... ..+.+
T Consensus 3 ~~f~~~v~~i~~~i~~i~~~~~~l~~l~~~~l~~~~~d~~~~~el~~l~~~i~~~~~~~~~~lk~l~~~~~~~~-~~~~~ 81 (103)
T PF00804_consen 3 PEFFDEVQEIREDIDKIKEKLNELRKLHKKILSSPDQDSELKRELDELTDEIKQLFQKIKKRLKQLSKDNEDSE-GEEPS 81 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-CTT--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc-ccCCC
Confidence 569999999999999999998654432 11221 2356888888888889999988888764211 22357
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 026774 75 EKEMNRRKDMLANLRSKVNQMA 96 (233)
Q Consensus 75 ~~E~~~R~~~~~~l~~~l~~l~ 96 (233)
+.+.+.|++++..|..++.+++
T Consensus 82 ~~~~ri~~nq~~~L~~kf~~~m 103 (103)
T PF00804_consen 82 SNEVRIRKNQVQALSKKFQEVM 103 (103)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHC
Confidence 8999999999999999998764
No 27
>COG5074 t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion]
Probab=96.78 E-value=0.028 Score=46.05 Aligned_cols=83 Identities=14% Similarity=0.301 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHH
Q 026774 139 IMREQDEGLEKLEETVVSTKHIALAVNEELDLHTRLIDDLDQHVDVTDSRLRRVQKNLAILNKRTKGGCTCMCMLLAVIG 218 (233)
Q Consensus 139 ~~~~qd~~l~~l~~~v~~l~~~~~~i~~ev~~Q~~~ld~i~~~vd~~~~~l~~~~~~l~~~~~~~~~~~~~~~i~~l~i~ 218 (233)
-+...++.+-+|.+-...+.++-..=...|+-=+.-+.+...+|+.+...+++|-+-.+.+.+ .+|.||.|++.+|+
T Consensus 186 ~ikkiEkt~ael~qLfndm~~~V~eq~e~Vd~I~~~~~~~~~n~~~g~~h~d~AvksaRaaRk---kki~c~gI~~iii~ 262 (280)
T COG5074 186 EIKKIEKTMAELTQLFNDMEELVIEQQENVDVIDKNVEDAQENVEQGVGHTDKAVKSARAARK---KKIRCYGICFIIII 262 (280)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHhhHhhHHhhHHHhhhhHHHHHHHHHHHHh---cceehhhhHHHHHH
Confidence 344445555555555555555555555556666667778888888888888887776444333 24555544444444
Q ss_pred HHHHHH
Q 026774 219 IVVLVV 224 (233)
Q Consensus 219 lv~l~v 224 (233)
+|+.+|
T Consensus 263 viv~vv 268 (280)
T COG5074 263 VIVVVV 268 (280)
T ss_pred HHHHHH
Confidence 443333
No 28
>KOG0811 consensus SNARE protein PEP12/VAM3/Syntaxin 7/Syntaxin 17 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.59 E-value=0.085 Score=44.73 Aligned_cols=92 Identities=15% Similarity=0.168 Sum_probs=71.7
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHhcCCCch
Q 026774 129 NQGLVGFQRQIMREQDEGLEKLEETVVSTKHIALAVNEELDLHTRLIDDLDQHVDVTDSRLRRVQKNLAILNKRTKGGCT 208 (233)
Q Consensus 129 ~~~~~~~q~~~~~~qd~~l~~l~~~v~~l~~~~~~i~~ev~~Q~~~ld~i~~~vd~~~~~l~~~~~~l~~~~~~~~~~~~ 208 (233)
..+.++...+-+.+.+..|-++.+....|..|-.+=|+-|+.=..-++....+|..+...|.+|.+.=++..+. .|.
T Consensus 171 ~~~~ieeR~q~I~~lE~dI~dvN~IFkdL~~lV~eQG~~VDsIe~nve~a~~nveqg~~~L~kA~~yq~~~~k~---~~~ 247 (269)
T KOG0811|consen 171 QLDLIEEREQAIEQLEADIIDVNEIFKDLGSLVHEQGELVDSIEANVENASVNVEQGTENLRKAAKYQRKARKK---KCI 247 (269)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc---hhh
Confidence 34445555677888889999999999999999999999999999999999999999999999988765554443 366
Q ss_pred hHHHHHHHHHHHHHH
Q 026774 209 CMCMLLAVIGIVVLV 223 (233)
Q Consensus 209 ~~~i~~l~i~lv~l~ 223 (233)
..|+++.+++++.++
T Consensus 248 ll~v~~~v~lii~l~ 262 (269)
T KOG0811|consen 248 LLLVGGPVGLIIGLI 262 (269)
T ss_pred hhHHHHHHHHHHHHH
Confidence 666655444444443
No 29
>smart00503 SynN Syntaxin N-terminal domain. Three-helix domain that (in Sso1p) slows the rate of its reaction with the SNAP-25 homologue Sec9p
Probab=95.63 E-value=0.29 Score=35.69 Aligned_cols=95 Identities=15% Similarity=0.177 Sum_probs=65.8
Q ss_pred CCcHHHHHHHHHHHHHHHHHhhHhhhCCC-----CCC--c----hhHHHHHHHHHHHHHHHHhHHHHHHHHhcCCCCCCC
Q 026774 5 SDSWIKEYNEAIKLADDINGMISERSSMP-----ASG--P----ESQRHASAIRRKITILGTRLDSLQSLLSKLPGKQPI 73 (233)
Q Consensus 5 ~D~~~~~~~ev~~~l~~i~~~i~~r~~~~-----~~~--~----e~~~~~~~Ir~~l~~l~~~l~~L~~~l~~~~~~~~~ 73 (233)
.+.|+...++|...+..|+..+.+-..+. ..+ + ....+..++......+...|+.|+......+..
T Consensus 3 ~~~F~~~v~~I~~~I~~i~~~v~~l~~l~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~lk~l~~~~~~~~~~--- 79 (117)
T smart00503 3 LDEFFEKVEEIRANIQKISQNVAELQKLHEELLTPPDADKELREKLERLIDDIKRLAKEIRAKLKELEKENLENRAS--- 79 (117)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhccc---
Confidence 45799999999999999998876544321 111 1 113455566666666677777766654433332
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 026774 74 SEKEMNRRKDMLANLRSKVNQMASTLNMS 102 (233)
Q Consensus 74 ~~~E~~~R~~~~~~l~~~l~~l~~~~~~~ 102 (233)
++.+-+.|+.++..|..++..+...|+..
T Consensus 80 ~~~~~r~~~~q~~~L~~~f~~~m~~fq~~ 108 (117)
T smart00503 80 GSASDRTRKAQTEKLRKKFKEVMNEFQRL 108 (117)
T ss_pred CCHhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35667899999999999999999988753
No 30
>KOG3202 consensus SNARE protein TLG1/Syntaxin 6 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.14 E-value=0.65 Score=38.64 Aligned_cols=90 Identities=14% Similarity=0.217 Sum_probs=63.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHhcCCCchh
Q 026774 130 QGLVGFQRQIMREQDEGLEKLEETVVSTKHIALAVNEELDLHTRLIDDLDQHVDVTDSRLRRVQKNLAILNKRTKGGCTC 209 (233)
Q Consensus 130 ~~~~~~q~~~~~~qd~~l~~l~~~v~~l~~~~~~i~~ev~~Q~~~ld~i~~~vd~~~~~l~~~~~~l~~~~~~~~~~~~~ 209 (233)
+.+++.|...++.....+..+......+++=-..=+..++....-+|.++..++++..++...+. .....+. |.+
T Consensus 144 qqm~~eQDe~Ld~ls~ti~rlk~~a~~~g~EL~~Q~~llDdl~~e~d~t~srl~~~~~~l~~v~~----~~s~~~~-~~~ 218 (235)
T KOG3202|consen 144 QQMLQEQDEGLDGLSATVQRLKGMALAMGEELEEQGRLLDDLDNEMDRTESRLDRVMKRLAKVNR----MASQCSQ-WCA 218 (235)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----Hhccccc-hhH
Confidence 44556776667777777777777777766666666778889999999999999999999988887 3455555 555
Q ss_pred HHHHHHHHHHHHHHH
Q 026774 210 MCMLLAVIGIVVLVV 224 (233)
Q Consensus 210 ~~i~~l~i~lv~l~v 224 (233)
..+++.+++++++++
T Consensus 219 il~l~~~~~lvv~i~ 233 (235)
T KOG3202|consen 219 ILLLVGLLLLVVIIF 233 (235)
T ss_pred HHHHHHHHHHHHHHh
Confidence 554444444444444
No 31
>cd00179 SynN Syntaxin N-terminus domain; syntaxins are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane; they are a family of receptors for intracellular transport vesicles; each target membrane may be identified by a specific member of the syntaxin family; syntaxins contain a moderately well conserved amino-terminal domain, called Habc, whose structure is an antiparallel three-helix bundle; a linker of about 30 amino acids connects this to the carboxy-terminal region, designated H3 (t_SNARE), of the syntaxin cytoplasmic domain; the highly conserved H3 region forms a single, long alpha-helix when it is part of the core SNARE complex and anchors the protein on the cytoplasmic surface of cellular membranes; H3 is not included in defining this domain
Probab=94.12 E-value=0.79 Score=35.02 Aligned_cols=95 Identities=17% Similarity=0.203 Sum_probs=66.5
Q ss_pred CcHHHHHHHHHHHHHHHHHhhHhhhCCC-----CCC--c----hhHHHHHHHHHHHHHHHHhHHHHHHHHhcCCCCCCCC
Q 026774 6 DSWIKEYNEAIKLADDINGMISERSSMP-----ASG--P----ESQRHASAIRRKITILGTRLDSLQSLLSKLPGKQPIS 74 (233)
Q Consensus 6 D~~~~~~~ev~~~l~~i~~~i~~r~~~~-----~~~--~----e~~~~~~~Ir~~l~~l~~~l~~L~~~l~~~~~~~~~~ 74 (233)
+.|+...++|...+..|+..+..-..+. ..+ + ....+..++......+...|+.|+......+..+ +
T Consensus 2 ~~F~~~v~~I~~~i~~i~~~v~~l~~l~~~~~t~~~~~~~~~~~l~~~~~~~~~~~~~ik~~lk~l~~~~~~~~~~~--~ 79 (151)
T cd00179 2 EEFFEEVEEIRGNIDKISEDVEELQKLHSQLLTAPDADPELKQELESLVQEIKKLAKEIKGKLKELEESNEQNEALN--G 79 (151)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC--C
Confidence 4589999999999999998876544321 111 1 1234566666667777777777766544333333 5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 026774 75 EKEMNRRKDMLANLRSKVNQMASTLNMS 102 (233)
Q Consensus 75 ~~E~~~R~~~~~~l~~~l~~l~~~~~~~ 102 (233)
+.+.+.|+.++..|..++.++...|+..
T Consensus 80 s~~~r~~~~q~~~L~~~f~~~m~~fq~~ 107 (151)
T cd00179 80 SSVDRIRKTQHSGLSKKFVEVMTEFNKA 107 (151)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6778899999999999999999988753
No 32
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=93.98 E-value=1 Score=30.11 Aligned_cols=47 Identities=17% Similarity=0.309 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHhcCCCchhHH
Q 026774 163 AVNEELDLHTRLIDDLDQHVDVTDSRLRRVQKNLAILNKRTKGGCTCMC 211 (233)
Q Consensus 163 ~i~~ev~~Q~~~ld~i~~~vd~~~~~l~~~~~~l~~~~~~~~~~~~~~~ 211 (233)
.+...++.+.+-++.++..-+.....+...+.++.++-.. .+|.+.+
T Consensus 10 ~ie~~l~~~~~~i~~lE~~~~~~e~~i~~~~~~l~~I~~n--~kW~~r~ 56 (71)
T PF10779_consen 10 RIETKLDNHEERIDKLEKRDAANEKDIKNLNKQLEKIKSN--TKWIWRT 56 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHH
Confidence 3444566677777888888888888888889999888774 2355443
No 33
>KOG2678 consensus Predicted membrane protein [Function unknown]
Probab=93.29 E-value=3.1 Score=34.12 Aligned_cols=93 Identities=15% Similarity=0.236 Sum_probs=55.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHH----HHHHhcCCCchhHHHH
Q 026774 138 QIMREQDEGLEKLEETVVSTKHIALAVNEELDLHTRLIDDLDQHVDVTDSRLRRVQKNLA----ILNKRTKGGCTCMCML 213 (233)
Q Consensus 138 ~~~~~qd~~l~~l~~~v~~l~~~~~~i~~ev~~Q~~~ld~i~~~vd~~~~~l~~~~~~l~----~~~~~~~~~~~~~~i~ 213 (233)
+.+..|+.-=++|.+++..|........ +.-|+. |+.=..-+..+...++.....++ ++-++..++...|..+
T Consensus 144 q~l~~q~~lQeeLaesll~LArslKtna--lAfqsa-lkeDnQvl~~~~k~~D~N~~~L~~~Serve~y~ksk~s~wf~~ 220 (244)
T KOG2678|consen 144 QQLEDQDTLQEELAESLLKLARSLKTNA--LAFQSA-LKEDNQVLGAAEKGIDVNSQGLMDVSERVEKYDKSKLSYWFYI 220 (244)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHhH--HHHHHH-HHhhHHHHHHHHHHHhHHHHHHHhhhHHHHHHHHhhhhHHHHH
Confidence 3455555555667666655555544432 333444 33434455566666666555555 4444444433566668
Q ss_pred HHHHHHHHHHHHHHHHHhhC
Q 026774 214 LAVIGIVVLVVVIYMLIKYL 233 (233)
Q Consensus 214 ~l~i~lv~l~v~i~~~~k~~ 233 (233)
.++|++++.||+-++++++|
T Consensus 221 ~miI~v~~sFVsMiliiqif 240 (244)
T KOG2678|consen 221 TMIIFVILSFVSMILIIQIF 240 (244)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 88888888888888888875
No 34
>PHA02819 hypothetical protein; Provisional
Probab=93.18 E-value=0.21 Score=33.10 Aligned_cols=25 Identities=16% Similarity=0.457 Sum_probs=12.3
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHh
Q 026774 207 CTCMCMLLAVIGIVVLVVVIYMLIK 231 (233)
Q Consensus 207 ~~~~~i~~l~i~lv~l~v~i~~~~k 231 (233)
+.|+.+++++++++++++++|+-+|
T Consensus 44 ~~~~~~ii~l~~~~~~~~~~flYLK 68 (71)
T PHA02819 44 FLRYYLIIGLVTIVFVIIFIIFYLK 68 (71)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444455555555555555
No 35
>PF05478 Prominin: Prominin; InterPro: IPR008795 The prominins are an emerging family of proteins that, among the multispan membrane proteins, display a novel topology. Mouse and Homo sapiens prominin and (Mus musculus) prominin-like 1 (PROML1) are predicted to contain five membrane spanning domains, with an N-terminal domain exposed to the extracellular space followed by four, alternating small cytoplasmic and large extracellular, loops and a cytoplasmic C-terminal domain []. The exact function of prominin is unknown although in humans defects in PROM1, the gene coding for prominin, cause retinal degeneration [].; GO: 0016021 integral to membrane
Probab=92.86 E-value=10 Score=37.40 Aligned_cols=52 Identities=6% Similarity=0.111 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHH
Q 026774 148 EKLEETVVSTKHIALAVNEELDLHTRLIDDLDQHVDVTDSRLRRVQKNLAILNK 201 (233)
Q Consensus 148 ~~l~~~v~~l~~~~~~i~~ev~~Q~~~ld~i~~~vd~~~~~l~~~~~~l~~~~~ 201 (233)
..+...+..++.....+.+.+..+ +...+..-..++...++.....+.++-.
T Consensus 360 ~~ik~~l~~~~~~i~~~a~~i~~~--~~~~~s~~~~~~~~~~~~~~~~~~~y~~ 411 (806)
T PF05478_consen 360 PPIKRDLDSIGKQIRSQAKQIPNQ--IDSNISDILNNTERSSRSFEDEYEKYDS 411 (806)
T ss_pred HHHHHHHHHHHHHHHHHHHHhHHH--HHHHHHHHHHHHHHHhhcchhHHHHHHH
Confidence 333333333333333333333333 3333444444444444444444444433
No 36
>PF11166 DUF2951: Protein of unknown function (DUF2951); InterPro: IPR021337 This family of proteins has no known function. It has a highly conserved sequence.
Probab=92.74 E-value=2.5 Score=29.77 Aligned_cols=71 Identities=13% Similarity=0.098 Sum_probs=46.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHH
Q 026774 142 EQDEGLEKLEETVVSTKHIALAVNEELDLHTRLIDDLDQHVDVTDSRLRRVQKNLAILNKRTKGGCTCMCML 213 (233)
Q Consensus 142 ~qd~~l~~l~~~v~~l~~~~~~i~~ev~~Q~~~ld~i~~~vd~~~~~l~~~~~~l~~~~~~~~~~~~~~~i~ 213 (233)
++|..|..|+..-..+.+-...|.+=+..|+...+.++-.+|.-... ....++.++...++=.-+++|++.
T Consensus 8 e~e~Ri~rLEendk~i~~~L~~Ik~gq~~qe~v~~kld~tlD~i~re-Re~dee~k~~n~Knir~~KmwilG 78 (98)
T PF11166_consen 8 EHEWRIRRLEENDKTIFNKLDEIKDGQHDQELVNQKLDRTLDEINRE-REEDEENKKKNDKNIRDIKMWILG 78 (98)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhHhhHHHHHHHHHhhHHHHHHH-HHHHHHHHHHHHhhHHHHHHHHHH
Confidence 45566667777777777777777778888888888888888874332 334555555555432337777654
No 37
>KOG0809 consensus SNARE protein TLG2/Syntaxin 16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.58 E-value=6.1 Score=33.84 Aligned_cols=203 Identities=13% Similarity=0.145 Sum_probs=118.8
Q ss_pred HHHHHHhhHhhhCCCCCCc---hhHHHHHHHHHHHHHHHHhHHHHHHHHhcCCC-CCCCCHHHHHHHHHHHHHHHHHHHH
Q 026774 19 ADDINGMISERSSMPASGP---ESQRHASAIRRKITILGTRLDSLQSLLSKLPG-KQPISEKEMNRRKDMLANLRSKVNQ 94 (233)
Q Consensus 19 l~~i~~~i~~r~~~~~~~~---e~~~~~~~Ir~~l~~l~~~l~~L~~~l~~~~~-~~~~~~~E~~~R~~~~~~l~~~l~~ 94 (233)
+..+..+-- +..+.+... +...++.+|...+..+.+.+..+.......++ +..+...-..---..+..+..++..
T Consensus 80 Lgk~~~Khl-~PsF~Dk~ede~~IE~ltq~Itqll~~cqk~iq~~~a~~n~~~~~e~~~~~n~~~~la~~LQ~~s~~fR~ 158 (305)
T KOG0809|consen 80 LGKAHAKHL-RPSFSDKREDEHEIEELTQEITQLLQKCQKLIQRLSASLNQLSPSERLLRKNAQGYLALQLQTLSREFRG 158 (305)
T ss_pred HHHHHHHhc-CCCCCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444433 676665543 45678899999999999999988777653332 1111112222223333444444433
Q ss_pred HHHHh----cc-----cc-ccCCCCcCC-C-CC--CCh--hhhhcccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026774 95 MASTL----NM-----SN-FANRDSLLG-P-EI--KSA--DVMNRATGLDNQGLVGFQRQIMREQDEGLEKLEETVVSTK 158 (233)
Q Consensus 95 l~~~~----~~-----~~-~~~r~~l~~-~-~~--~~~--~e~~~~~~~~~~~~~~~q~~~~~~qd~~l~~l~~~v~~l~ 158 (233)
..+.| +. .. ..+-..++. + .. .+. .+..-..-..|.+......+.+.+.-+.+-+|......|.
T Consensus 159 ~Qs~YLK~l~~~ee~~~~~e~~~~~~~~~~dd~d~~~~~~qe~ql~~~e~~~~~~~erE~EV~ql~~sI~dL~~if~DL~ 238 (305)
T KOG0809|consen 159 LQSKYLKRLRNREENSQEYEDSLDNTVDLPDDEDFSDRTFQEQQLMLFENNEEVVREREKEVTQLVESIYDLNQIFKDLS 238 (305)
T ss_pred HHHHHHHHhhchhhcccchhhhccccccCcchhhhhhhhHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33332 11 00 011111111 0 00 010 0000011123444445555667777788999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHH
Q 026774 159 HIALAVNEELDLHTRLIDDLDQHVDVTDSRLRRVQKNLAILNKRTKGGCTCMCMLLAVIGIVVLVVVI 226 (233)
Q Consensus 159 ~~~~~i~~ev~~Q~~~ld~i~~~vd~~~~~l~~~~~~l~~~~~~~~~~~~~~~i~~l~i~lv~l~v~i 226 (233)
.+-.+=|.-|+.=.--++.....++.+...|.+|.. .-++++..+-+|++++++|++++++++.
T Consensus 239 ~lVvdQGtvvDRIDyNvEqt~~~v~~a~keL~KAe~----yQk~~~k~~~i~~L~l~ii~llvllilk 302 (305)
T KOG0809|consen 239 ALVVDQGTVVDRIDYNVEQTQVRVEDALKELHKAER----YQKRNKKMKVILMLTLLIIALLVLLILK 302 (305)
T ss_pred HHHHHhccchhheecchhhhhhhHHhHHHHHHHHHH----HHhcCCceEehHHHHHHHHHHHHHHHhh
Confidence 999999999999888899999999999999887754 4556677566666666667777766653
No 38
>PF05478 Prominin: Prominin; InterPro: IPR008795 The prominins are an emerging family of proteins that, among the multispan membrane proteins, display a novel topology. Mouse and Homo sapiens prominin and (Mus musculus) prominin-like 1 (PROML1) are predicted to contain five membrane spanning domains, with an N-terminal domain exposed to the extracellular space followed by four, alternating small cytoplasmic and large extracellular, loops and a cytoplasmic C-terminal domain []. The exact function of prominin is unknown although in humans defects in PROM1, the gene coding for prominin, cause retinal degeneration [].; GO: 0016021 integral to membrane
Probab=92.27 E-value=3.9 Score=40.36 Aligned_cols=61 Identities=8% Similarity=0.131 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HhHhHHHHHHHHHHHHHHHHHHHHhcCC-Cch
Q 026774 148 EKLEETVVSTKHIALAVNEELDLHTRLIDD-LDQHVDVTDSRLRRVQKNLAILNKRTKG-GCT 208 (233)
Q Consensus 148 ~~l~~~v~~l~~~~~~i~~ev~~Q~~~ld~-i~~~vd~~~~~l~~~~~~l~~~~~~~~~-~~~ 208 (233)
++....+..++..-..++.++..+.+.+.. ++..+........+..+......++... ||.
T Consensus 353 ~qt~~~v~~ik~~l~~~~~~i~~~a~~i~~~~~~~~s~~~~~~~~~~~~~~~~~~~y~~yR~~ 415 (806)
T PF05478_consen 353 NQTSDVVPPIKRDLDSIGKQIRSQAKQIPNQIDSNISDILNNTERSSRSFEDEYEKYDSYRWI 415 (806)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHH
Confidence 355566667777777777777777776655 4444555555554444444344444444 444
No 39
>PHA03054 IMV membrane protein; Provisional
Probab=92.02 E-value=0.33 Score=32.12 Aligned_cols=25 Identities=16% Similarity=0.506 Sum_probs=12.8
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHh
Q 026774 207 CTCMCMLLAVIGIVVLVVVIYMLIK 231 (233)
Q Consensus 207 ~~~~~i~~l~i~lv~l~v~i~~~~k 231 (233)
+.|+.+++++++++++++++|+-+|
T Consensus 46 ~~~~~~ii~l~~v~~~~l~~flYLK 70 (72)
T PHA03054 46 WGWYWLIIIFFIVLILLLLIYLYLK 70 (72)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344444444555555555565555
No 40
>PHA02844 putative transmembrane protein; Provisional
Probab=90.99 E-value=0.99 Score=30.27 Aligned_cols=24 Identities=17% Similarity=0.382 Sum_probs=11.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHh
Q 026774 208 TCMCMLLAVIGIVVLVVVIYMLIK 231 (233)
Q Consensus 208 ~~~~i~~l~i~lv~l~v~i~~~~k 231 (233)
.|+.++++++++++++++.|+-+|
T Consensus 47 ~~~~~ii~i~~v~~~~~~~flYLK 70 (75)
T PHA02844 47 STKIWILTIIFVVFATFLTFLYLK 70 (75)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHh
Confidence 334333444444444455555555
No 41
>PHA02650 hypothetical protein; Provisional
Probab=90.36 E-value=0.58 Score=31.73 Aligned_cols=24 Identities=4% Similarity=0.405 Sum_probs=11.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHh
Q 026774 208 TCMCMLLAVIGIVVLVVVIYMLIK 231 (233)
Q Consensus 208 ~~~~i~~l~i~lv~l~v~i~~~~k 231 (233)
.|+.+++++++++++++++|+-+|
T Consensus 48 ~~~~~ii~i~~v~i~~l~~flYLK 71 (81)
T PHA02650 48 NGQNFIFLIFSLIIVALFSFFVFK 71 (81)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333334444444444555555555
No 42
>COG5325 t-SNARE complex subunit, syntaxin [Intracellular trafficking and secretion]
Probab=90.32 E-value=5.6 Score=33.73 Aligned_cols=57 Identities=12% Similarity=0.126 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHHHHHHhhHhhhC------CCCCCchhHHHHHHHHHHHHHHHHhHHHHHHHHh
Q 026774 8 WIKEYNEAIKLADDINGMISERSS------MPASGPESQRHASAIRRKITILGTRLDSLQSLLS 65 (233)
Q Consensus 8 ~~~~~~ev~~~l~~i~~~i~~r~~------~~~~~~e~~~~~~~Ir~~l~~l~~~l~~L~~~l~ 65 (233)
|......|...+..++..+..+.. .|. -.+...-..+|......+..+|..++..++
T Consensus 36 ~i~~~~~v~~~l~~vrr~~~~l~~~y~k~~~p~-f~~k~~k~~ei~~L~~kv~~~l~~~~ki~~ 98 (283)
T COG5325 36 FILSAASVDQELTAVRRSISRLGKVYAKHTEPS-FSDKSEKEDEIDELSKKVNQDLQRCEKILK 98 (283)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCc-chhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777888888888888887755443 221 123344566677777777777777766653
No 43
>PF01519 DUF16: Protein of unknown function DUF16; InterPro: IPR002862 Proteins that contain this domain are of unknown function. It appears to be confined to proteins from Mycoplasma pneumoniae [].; PDB: 2BA2_C.
Probab=90.00 E-value=3.7 Score=29.46 Aligned_cols=50 Identities=18% Similarity=0.219 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHH
Q 026774 142 EQDEGLEKLEETVVSTKHIALAVNEELDLHTRLIDDLDQHVDVTDSRLRR 191 (233)
Q Consensus 142 ~qd~~l~~l~~~v~~l~~~~~~i~~ev~~Q~~~ld~i~~~vd~~~~~l~~ 191 (233)
.|.++++.|.+.|..+.+--.....+++.|++.|+.|...+..-+.||+.
T Consensus 50 ~qgeqI~kL~e~V~~QGEqIkel~~e~k~qgktL~~I~~~L~~inkRLD~ 99 (102)
T PF01519_consen 50 AQGEQINKLTEKVDKQGEQIKELQVEQKAQGKTLQLILKTLQSINKRLDK 99 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 56678888888888888888888888899999998888888777777764
No 44
>PF00957 Synaptobrevin: Synaptobrevin; InterPro: IPR001388 Synaptobrevin is an intrinsic membrane protein of small synaptic vesicles [], specialised secretory organelles of neurons that actively accumulate neurotransmitters and participate in their calcium-dependent release by exocytosis. Vesicle function is mediated by proteins in their membranes, although the precise nature of the protein-protein interactions underlying this are still uncertain []. Synaptobrevin may play a role in the molecular events underlying neurotransmitter release and vesicle recycling and may be involved in the regulation of membrane flow in the nerve terminal, a process mediated by interaction with low molecular weight GTP-binding proteins []. Synaptic vesicle-associated membrane proteins (VAMPs) from Torpedo californica (Pacific electric ray) and SNC1 from yeast are related to synaptobrevin.; GO: 0016192 vesicle-mediated transport, 0016021 integral to membrane; PDB: 3EGX_C 2NUP_C 3EGD_C 2NUT_C 1IOU_A 1H8M_A 3B5N_A 3ZYM_A 2NPS_A 1SFC_E ....
Probab=88.32 E-value=6.6 Score=27.19 Aligned_cols=20 Identities=10% Similarity=0.127 Sum_probs=9.3
Q ss_pred hHHHHHHHHHHHHHHHHHHH
Q 026774 181 HVDVTDSRLRRVQKNLAILN 200 (233)
Q Consensus 181 ~vd~~~~~l~~~~~~l~~~~ 200 (233)
++........+..+++++..
T Consensus 42 ~L~~~a~~F~k~a~~l~r~~ 61 (89)
T PF00957_consen 42 ELSDNAKQFKKNAKKLKRKM 61 (89)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhHHHHHHHHHHHHHH
Confidence 33344444555555555444
No 45
>PF12575 DUF3753: Protein of unknown function (DUF3753); InterPro: IPR009175 This group represents an uncharacterised conserved protein belonging to poxvirus family I2.
Probab=88.27 E-value=1.2 Score=29.89 Aligned_cols=21 Identities=14% Similarity=0.657 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 026774 211 CMLLAVIGIVVLVVVIYMLIK 231 (233)
Q Consensus 211 ~i~~l~i~lv~l~v~i~~~~k 231 (233)
.+++.+|+++++++++|+-+|
T Consensus 50 ~~ii~ii~v~ii~~l~flYLK 70 (72)
T PF12575_consen 50 ILIISIIFVLIIVLLTFLYLK 70 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHhc
Confidence 333333344444444444444
No 46
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=87.83 E-value=8.4 Score=28.89 Aligned_cols=58 Identities=9% Similarity=0.288 Sum_probs=48.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHH
Q 026774 144 DEGLEKLEETVVSTKHIALAVNEELDLHTRLIDDLDQHVDVTDSRLRRVQKNLAILNK 201 (233)
Q Consensus 144 d~~l~~l~~~v~~l~~~~~~i~~ev~~Q~~~ld~i~~~vd~~~~~l~~~~~~l~~~~~ 201 (233)
-..|+.+...+.+..++...|.+||.+=..=+.+|..+++..+..+..--.+|..+-.
T Consensus 67 sqRId~vd~klDe~~ei~~~i~~eV~~v~~dv~~i~~dv~~v~~~V~~Le~ki~~ie~ 124 (126)
T PF07889_consen 67 SQRIDRVDDKLDEQKEISKQIKDEVTEVREDVSQIGDDVDSVQQMVEGLEGKIDEIEE 124 (126)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3567888888888899999999999888888889999999988888888888876654
No 47
>PF09753 Use1: Membrane fusion protein Use1; InterPro: IPR019150 This entry represents a family of proteins, approximately 300 residues in length, involved in vesicle transport. They have a single C-terminal transmembrane domain and a SNARE [soluble NSF (N-ethylmaleimide-sensitive fusion protein) attachment protein receptor] domain of approximately 60 residues. The SNARE domains are essential for membrane fusion and are conserved from yeasts to humans. Use1 is one of the three protein subunits that make up the SNARE complex and it is specifically required for Golgi-endoplasmic reticulum retrograde transport [].
Probab=87.80 E-value=5.9 Score=33.24 Aligned_cols=63 Identities=14% Similarity=0.182 Sum_probs=29.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHhHhHHHHHHHHHHH
Q 026774 130 QGLVGFQRQIMREQDEGLEKLEETVVSTKHIALAV----NEELDLHTRLIDDLDQHVDVTDSRLRRV 192 (233)
Q Consensus 130 ~~~~~~q~~~~~~qd~~l~~l~~~v~~l~~~~~~i----~~ev~~Q~~~ld~i~~~vd~~~~~l~~~ 192 (233)
+..+++|+.+-++.-+++-.|...+..--..+..+ ..-|+.=.+.+|.=-..+..+..+|+.-
T Consensus 155 e~~l~~~~~~QE~L~~em~~La~~LK~~s~~~~~~l~~D~~~L~~~~~~~d~n~~~l~~~~~rl~~~ 221 (251)
T PF09753_consen 155 EKILQHHRNLQEDLTEEMLSLARQLKENSLAFSQILKEDNKVLDRTEEGLDRNLSSLKRESKRLKEH 221 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555544444433333332 2224444444554445555555555443
No 48
>PF05531 NPV_P10: Nucleopolyhedrovirus P10 protein; InterPro: IPR008702 This family consists of several nucleopolyhedrovirus P10 proteins which are thought to be involved in the morphogenesis of the polyhedra [].; GO: 0019028 viral capsid
Probab=87.44 E-value=7 Score=26.48 Aligned_cols=58 Identities=19% Similarity=0.275 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhHhHHHHHHHH
Q 026774 132 LVGFQRQIMREQDEGLEKLEETVVSTKHIALA---VNEELDLHTRLIDDLDQHVDVTDSRL 189 (233)
Q Consensus 132 ~~~~q~~~~~~qd~~l~~l~~~v~~l~~~~~~---i~~ev~~Q~~~ld~i~~~vd~~~~~l 189 (233)
++..=++-+..-|...+.|...|..++.-..+ +..-++.|...|+.++..|+.-++-|
T Consensus 5 ILl~Ir~dIk~vd~KVdaLq~~V~~l~~~~~~v~~l~~klDa~~~~l~~l~~~V~~I~~iL 65 (75)
T PF05531_consen 5 ILLVIRQDIKAVDDKVDALQTQVDDLESNLPDVTELNKKLDAQSAQLTTLNTKVNEIQDIL 65 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33333456778888999999999888887766 77888899999999888887766654
No 49
>PRK00523 hypothetical protein; Provisional
Probab=87.08 E-value=1.1 Score=29.95 Aligned_cols=25 Identities=16% Similarity=0.216 Sum_probs=14.7
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHh
Q 026774 207 CTCMCMLLAVIGIVVLVVVIYMLIK 231 (233)
Q Consensus 207 ~~~~~i~~l~i~lv~l~v~i~~~~k 231 (233)
+.+++|++.++++++-+++.||+.+
T Consensus 3 ~~~l~I~l~i~~li~G~~~Gffiar 27 (72)
T PRK00523 3 AIGLALGLGIPLLIVGGIIGYFVSK 27 (72)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555666666666666654
No 50
>PF03908 Sec20: Sec20; InterPro: IPR005606 Sec20 is a membrane glycoprotein associated with secretory pathway.
Probab=86.51 E-value=9 Score=26.82 Aligned_cols=14 Identities=36% Similarity=0.676 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHh
Q 026774 218 GIVVLVVVIYMLIK 231 (233)
Q Consensus 218 ~lv~l~v~i~~~~k 231 (233)
+++++++++|++.|
T Consensus 77 ~~~f~~~v~yI~~r 90 (92)
T PF03908_consen 77 FLFFLLVVLYILWR 90 (92)
T ss_pred HHHHHHHHHHHhhh
Confidence 34444555555544
No 51
>PF06143 Baculo_11_kDa: Baculovirus 11 kDa family; InterPro: IPR009313 This is a family of uncharacterised Baculovirus proteins that are all about 11 kDa in size.
Probab=86.40 E-value=1.6 Score=30.27 Aligned_cols=39 Identities=23% Similarity=0.460 Sum_probs=19.2
Q ss_pred HHHHHHHHHhcCC--Cc--hhHHHHHHHHHHHHHHHHHHHHHh
Q 026774 193 QKNLAILNKRTKG--GC--TCMCMLLAVIGIVVLVVVIYMLIK 231 (233)
Q Consensus 193 ~~~l~~~~~~~~~--~~--~~~~i~~l~i~lv~l~v~i~~~~k 231 (233)
..++..++.++++ +- ...|.++.+|+++++++++|.+.|
T Consensus 19 ~DQL~qlVsrN~sfirdFvLVic~~lVfVii~lFi~ll~~i~~ 61 (84)
T PF06143_consen 19 YDQLEQLVSRNRSFIRDFVLVICCFLVFVIIVLFILLLYNINK 61 (84)
T ss_pred HHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3566677766555 11 112334444444455555665554
No 52
>PHA02975 hypothetical protein; Provisional
Probab=85.75 E-value=4 Score=26.97 Aligned_cols=19 Identities=21% Similarity=0.508 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 026774 213 LLAVIGIVVLVVVIYMLIK 231 (233)
Q Consensus 213 ~~l~i~lv~l~v~i~~~~k 231 (233)
+++++++++++++.|+-+|
T Consensus 48 ii~i~~v~~~~~~~flYLK 66 (69)
T PHA02975 48 IIFIIFITCIAVFTFLYLK 66 (69)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3334444444445555555
No 53
>PHA02849 putative transmembrane protein; Provisional
Probab=84.99 E-value=1.6 Score=29.57 Aligned_cols=23 Identities=30% Similarity=0.509 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhh
Q 026774 210 MCMLLAVIGIVVLVVVIYMLIKY 232 (233)
Q Consensus 210 ~~i~~l~i~lv~l~v~i~~~~k~ 232 (233)
++|.+++++++++++++++++||
T Consensus 18 ~vi~v~v~vI~i~~flLlyLvkw 40 (82)
T PHA02849 18 TVILVFVLVISFLAFMLLYLIKW 40 (82)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666777778888888887
No 54
>PRK10884 SH3 domain-containing protein; Provisional
Probab=84.72 E-value=19 Score=29.36 Aligned_cols=38 Identities=13% Similarity=0.216 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHH
Q 026774 159 HIALAVNEELDLHTRLIDDLDQHVDVTDSRLRRVQKNL 196 (233)
Q Consensus 159 ~~~~~i~~ev~~Q~~~ld~i~~~vd~~~~~l~~~~~~l 196 (233)
+....+.+.+..-+..+.+++..-......+..+..++
T Consensus 118 ~~~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~ 155 (206)
T PRK10884 118 QRTAEMQQKVAQSDSVINGLKEENQKLKNQLIVAQKKV 155 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33334444444444444444444444444444444433
No 55
>PRK11637 AmiB activator; Provisional
Probab=84.57 E-value=31 Score=31.27 Aligned_cols=40 Identities=5% Similarity=0.107 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHH
Q 026774 145 EGLEKLEETVVSTKHIALAVNEELDLHTRLIDDLDQHVDV 184 (233)
Q Consensus 145 ~~l~~l~~~v~~l~~~~~~i~~ev~~Q~~~ld~i~~~vd~ 184 (233)
..+..+......+...-..+..+..++...++.+..+...
T Consensus 191 ~~~~~l~~~~~e~~~~k~~L~~~k~e~~~~l~~L~~~~~~ 230 (428)
T PRK11637 191 EKQSQQKTLLYEQQAQQQKLEQARNERKKTLTGLESSLQK 230 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555555555555555555555555444
No 56
>KOG3385 consensus V-SNARE [Intracellular trafficking, secretion, and vesicular transport]
Probab=84.54 E-value=7.6 Score=28.52 Aligned_cols=10 Identities=10% Similarity=0.315 Sum_probs=4.5
Q ss_pred HHHHHHHHHH
Q 026774 219 IVVLVVVIYM 228 (233)
Q Consensus 219 lv~l~v~i~~ 228 (233)
+|++|++.|+
T Consensus 107 lV~~fi~~~~ 116 (118)
T KOG3385|consen 107 LVAFFILWVW 116 (118)
T ss_pred HHHHHHhhee
Confidence 4444444444
No 57
>PRK01844 hypothetical protein; Provisional
Probab=83.29 E-value=2.2 Score=28.57 Aligned_cols=21 Identities=19% Similarity=0.444 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHh
Q 026774 211 CMLLAVIGIVVLVVVIYMLIK 231 (233)
Q Consensus 211 ~i~~l~i~lv~l~v~i~~~~k 231 (233)
.|++.++++++-+++.||+.+
T Consensus 6 ~I~l~I~~li~G~~~Gff~ar 26 (72)
T PRK01844 6 GILVGVVALVAGVALGFFIAR 26 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344445556666666666554
No 58
>PF10779 XhlA: Haemolysin XhlA; InterPro: IPR019715 Haemolysin XhlA is a cell-surface associated haemolysin that lyses the two most prevalent types of insect immune cells (granulocytes and plasmatocytes) as well as rabbit and horse erythrocytes [].
Probab=83.24 E-value=11 Score=25.06 Aligned_cols=54 Identities=19% Similarity=0.233 Sum_probs=32.9
Q ss_pred HHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHhcCC--CchhHHHHHHH
Q 026774 163 AVNEELDLHTRLIDDLDQHVDVTDSRLRRVQKNLAILNKRTKG--GCTCMCMLLAV 216 (233)
Q Consensus 163 ~i~~ev~~Q~~~ld~i~~~vd~~~~~l~~~~~~l~~~~~~~~~--~~~~~~i~~l~ 216 (233)
+|.+.+.....-+++++..++....+.......++.+.+.-+. .-..|.+-+++
T Consensus 3 ~i~e~l~~ie~~l~~~~~~i~~lE~~~~~~e~~i~~~~~~l~~I~~n~kW~~r~ii 58 (71)
T PF10779_consen 3 DIKEKLNRIETKLDNHEERIDKLEKRDAANEKDIKNLNKQLEKIKSNTKWIWRTII 58 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5666777777777777777766666655555555555555444 34455555443
No 59
>PF13800 Sigma_reg_N: Sigma factor regulator N-terminal
Probab=83.06 E-value=1.2 Score=31.61 Aligned_cols=9 Identities=22% Similarity=0.224 Sum_probs=4.4
Q ss_pred HHHHHhcCC
Q 026774 197 AILNKRTKG 205 (233)
Q Consensus 197 ~~~~~~~~~ 205 (233)
++++++.+.
T Consensus 2 k~i~kK~K~ 10 (96)
T PF13800_consen 2 KKILKKAKR 10 (96)
T ss_pred chHHHHHHH
Confidence 345555444
No 60
>PRK11637 AmiB activator; Provisional
Probab=81.68 E-value=41 Score=30.51 Aligned_cols=48 Identities=15% Similarity=0.205 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHH
Q 026774 144 DEGLEKLEETVVSTKHIALAVNEELDLHTRLIDDLDQHVDVTDSRLRR 191 (233)
Q Consensus 144 d~~l~~l~~~v~~l~~~~~~i~~ev~~Q~~~ld~i~~~vd~~~~~l~~ 191 (233)
......|.....+-...-..+..+...+...|..+..........+..
T Consensus 204 ~~~k~~L~~~k~e~~~~l~~L~~~~~~~~~~l~~l~~~~~~L~~~I~~ 251 (428)
T PRK11637 204 QAQQQKLEQARNERKKTLTGLESSLQKDQQQLSELRANESRLRDSIAR 251 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444444444444444445555555555555555544444444443
No 61
>PF06024 DUF912: Nucleopolyhedrovirus protein of unknown function (DUF912); InterPro: IPR009261 This entry is represented by Autographa californica nuclear polyhedrosis virus (AcMNPV), Orf78; it is a family of uncharacterised viral proteins.
Probab=81.35 E-value=0.7 Score=33.27 Aligned_cols=18 Identities=33% Similarity=0.597 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 026774 211 CMLLAVIGIVVLVVVIYM 228 (233)
Q Consensus 211 ~i~~l~i~lv~l~v~i~~ 228 (233)
++++.++++++++.+||+
T Consensus 66 i~lls~v~IlVily~IyY 83 (101)
T PF06024_consen 66 ISLLSFVCILVILYAIYY 83 (101)
T ss_pred HHHHHHHHHHHHHhhheE
Confidence 334444444444444443
No 62
>PF05008 V-SNARE: Vesicle transport v-SNARE protein N-terminus; InterPro: IPR007705 V-SNARE proteins are required for protein traffic between eukaryotic organelles. The v-SNAREs on transport vesicles interact with t-SNAREs on target membranes in order to facilitate this []. This domain is the N-terminal half of the V-Snare proteins. ; GO: 0006886 intracellular protein transport, 0016020 membrane; PDB: 2V8S_V 1VCS_A 3ONL_C 3ONJ_A 2QYW_A.
Probab=81.24 E-value=14 Score=24.83 Aligned_cols=74 Identities=18% Similarity=0.296 Sum_probs=43.9
Q ss_pred HHHHHHhhHhhhCCCCCCchhHHHHHHHHHHHHHHHHhHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 026774 19 ADDINGMISERSSMPASGPESQRHASAIRRKITILGTRLDSLQSLLSKLPGKQPISEKEMNRRKDMLANLRSKVNQMAST 98 (233)
Q Consensus 19 l~~i~~~i~~r~~~~~~~~e~~~~~~~Ir~~l~~l~~~l~~L~~~l~~~~~~~~~~~~E~~~R~~~~~~l~~~l~~l~~~ 98 (233)
..+|...+..-... ++.+....-.++...+..++..|..|+--++. +++.+......-+..++.++..++..
T Consensus 5 ~~~i~~~l~~~~~~--~~~~r~~~i~~~e~~l~ea~~~l~qMe~E~~~------~p~s~r~~~~~kl~~yr~~l~~lk~~ 76 (79)
T PF05008_consen 5 TAEIKSKLERIKNL--SGEQRKSLIREIERDLDEAEELLKQMELEVRS------LPPSERNQYKSKLRSYRSELKKLKKE 76 (79)
T ss_dssp HHHHHHHHHHGGGS---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCT------S-HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhcc--ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh------CCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444433332 23334445556666666666666666554443 35577778888888899988888876
Q ss_pred hc
Q 026774 99 LN 100 (233)
Q Consensus 99 ~~ 100 (233)
|.
T Consensus 77 l~ 78 (79)
T PF05008_consen 77 LK 78 (79)
T ss_dssp HH
T ss_pred hc
Confidence 63
No 63
>PHA02692 hypothetical protein; Provisional
Probab=81.03 E-value=4.2 Score=27.01 Aligned_cols=15 Identities=20% Similarity=0.405 Sum_probs=6.3
Q ss_pred HHHHHHHHHHHHHHh
Q 026774 217 IGIVVLVVVIYMLIK 231 (233)
Q Consensus 217 i~lv~l~v~i~~~~k 231 (233)
+++++++++.|+-+|
T Consensus 54 ~~~~~~vll~flYLK 68 (70)
T PHA02692 54 IAAAIGVLLCFHYLK 68 (70)
T ss_pred HHHHHHHHHHHHHHh
Confidence 333333444444444
No 64
>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins.
Probab=80.73 E-value=26 Score=27.69 Aligned_cols=33 Identities=9% Similarity=0.009 Sum_probs=14.7
Q ss_pred HHHHHHhHhHHHHHHHHHHHHHHHHHHHHhcCC
Q 026774 173 RLIDDLDQHVDVTDSRLRRVQKNLAILNKRTKG 205 (233)
Q Consensus 173 ~~ld~i~~~vd~~~~~l~~~~~~l~~~~~~~~~ 205 (233)
+....++..+..+..++...-..++.-+...+.
T Consensus 120 ~e~~~~~~ki~e~~~ki~~ei~~lr~~iE~~K~ 152 (177)
T PF07798_consen 120 EEQAKQELKIQELNNKIDTEIANLRTEIESLKW 152 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444444444445555554444
No 65
>PRK01026 tetrahydromethanopterin S-methyltransferase subunit G; Provisional
Probab=80.48 E-value=15 Score=24.88 Aligned_cols=22 Identities=14% Similarity=0.474 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHhHhHHHHHHHH
Q 026774 168 LDLHTRLIDDLDQHVDVTDSRL 189 (233)
Q Consensus 168 v~~Q~~~ld~i~~~vd~~~~~l 189 (233)
..+=.+-||++|+.|+.|.+.+
T Consensus 17 ~~~i~~rLD~iEeKVEftn~Ei 38 (77)
T PRK01026 17 FKEIQKRLDEIEEKVEFTNAEI 38 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344556777777777776655
No 66
>KOG0812 consensus SNARE protein SED5/Syntaxin 5 [Intracellular trafficking, secretion, and vesicular transport]
Probab=80.18 E-value=37 Score=29.11 Aligned_cols=58 Identities=14% Similarity=0.203 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHH
Q 026774 140 MREQDEGLEKLEETVVSTKHIALAVNEELDLHTRLIDDLDQHVDVTDSRLRRVQKNLA 197 (233)
Q Consensus 140 ~~~qd~~l~~l~~~v~~l~~~~~~i~~ev~~Q~~~ld~i~~~vd~~~~~l~~~~~~l~ 197 (233)
++..+-.+.+|++.-..|..|-..=++-+..=....|+.+-+++.++..|-+--.++.
T Consensus 229 ~q~IEstIsElG~IF~QLA~mVseQ~E~i~RID~nv~ds~lnI~gA~~ellKy~e~vS 286 (311)
T KOG0812|consen 229 MQNIESTISELGGIFQQLASMVSEQEETIQRIDDNVDDSDLNIEGAHSELLKYFERVS 286 (311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHhc
Confidence 4444445555555555555555554544544555555555555555555555444443
No 67
>PF04102 SlyX: SlyX; InterPro: IPR007236 The SlyX protein has no known function. It is short, less than 80 amino acids, and its gene is found close to the slyD gene. The SlyX protein has a conserved PPH(Y/W) motif at its C terminus. The protein may be a coiled-coil structure.; PDB: 3EFG_A.
Probab=79.34 E-value=15 Score=24.24 Aligned_cols=50 Identities=24% Similarity=0.397 Sum_probs=34.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHH
Q 026774 144 DEGLEKLEETVVSTKHIALAVNEELDLHTRLIDDLDQHVDVTDSRLRRVQ 193 (233)
Q Consensus 144 d~~l~~l~~~v~~l~~~~~~i~~ev~~Q~~~ld~i~~~vd~~~~~l~~~~ 193 (233)
++.|.+|+..+.-+-..-..+++.|-.|...|+.+...+.....++....
T Consensus 3 e~Ri~~LE~~la~qe~~ie~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~~~ 52 (69)
T PF04102_consen 3 EERIEELEIKLAFQEDTIEELNDVVTEQQRQIDRLQRQLRLLRERLRELE 52 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-----
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 45677777777777777777778888888888888888777777766543
No 68
>PTZ00046 rifin; Provisional
Probab=79.30 E-value=11 Score=33.42 Aligned_cols=20 Identities=35% Similarity=1.011 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHhh
Q 026774 213 LLAVIGIVVLVVVIYMLIKY 232 (233)
Q Consensus 213 ~~l~i~lv~l~v~i~~~~k~ 232 (233)
++.++++|+++|+||++++|
T Consensus 321 iiAIvVIVLIMvIIYLILRY 340 (358)
T PTZ00046 321 IVAIVVIVLIMVIIYLILRY 340 (358)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 44555666777899999876
No 69
>PF02009 Rifin_STEVOR: Rifin/stevor family; InterPro: IPR002858 Malaria is still a major cause of mortality in many areas of the world. Plasmodium falciparum causes the most severe human form of the disease and is responsible for most fatalities. Severe cases of malaria can occur when the parasite invades and then proliferates within red blood cell erythrocytes. The parasite produces many variant antigenic proteins, encoded by multigene families, which are present on the surface of the infected erythrocyte and play important roles in virulence. A crucial survival mechanism for the malaria parasite is its ability to evade the immune response by switching these variant surface antigens. The high virulence of P. falciparum relative to other malarial parasites is in large part due to the fact that in this organism many of these surface antigens mediate the binding of infected erythrocytes to the vascular endothelium (cytoadherence) and non-infected erythrocytes (rosetting). This can lead to the accumulation of infected cells in the vasculature of a variety of organs, blocking the blood flow and reducing the oxygen supply. Clinical symptoms of severe infection can include fever, progressive anaemia, multi-organ dysfunction and coma. For more information see []. Several multicopy gene families have been described in Plasmodium falciparum, including the stevor family of subtelomeric open reading frames and the rif interspersed repetitive elements. Both families contain three predicted transmembrane segments. It has been proposed that stevor and rif are members of a larger superfamily that code for variant surface antigens [].
Probab=78.96 E-value=2.6 Score=36.47 Aligned_cols=20 Identities=35% Similarity=1.002 Sum_probs=14.9
Q ss_pred HHHHHHHHHHHHHHHHHHhh
Q 026774 213 LLAVIGIVVLVVVIYMLIKY 232 (233)
Q Consensus 213 ~~l~i~lv~l~v~i~~~~k~ 232 (233)
++.|++||+++|+||++++|
T Consensus 262 iiaIliIVLIMvIIYLILRY 281 (299)
T PF02009_consen 262 IIAILIIVLIMVIIYLILRY 281 (299)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 55666677777888988875
No 70
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=78.78 E-value=14 Score=37.70 Aligned_cols=74 Identities=15% Similarity=0.299 Sum_probs=48.1
Q ss_pred CcHHHHHHHHHHHHHHHHHhhHhhhCCCCCCchhHHHHHHHHHHHHHHHHhHHHHHHHHhcCCCCCCCCHHHHH
Q 026774 6 DSWIKEYNEAIKLADDINGMISERSSMPASGPESQRHASAIRRKITILGTRLDSLQSLLSKLPGKQPISEKEMN 79 (233)
Q Consensus 6 D~~~~~~~ev~~~l~~i~~~i~~r~~~~~~~~e~~~~~~~Ir~~l~~l~~~l~~L~~~l~~~~~~~~~~~~E~~ 79 (233)
.+|...+.++++.+..|+..+....--...-........++|+.+..+...|..++..|...-....++..++.
T Consensus 1197 gay~s~f~~me~kl~~ir~il~~~svs~~~i~~l~~~~~~lr~~l~~~~e~L~~~E~~Lsdi~~~~~~a~~~Le 1270 (1758)
T KOG0994|consen 1197 GAYASRFLDMEEKLEEIRAILSAPSVSAEDIAQLASATESLRRQLQALTEDLPQEEETLSDITNSLPLAGKDLE 1270 (1758)
T ss_pred hhhHhHHHHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhccchhhhhHH
Confidence 46888888999999999888754332111111345678888888888888888888887643322223444443
No 71
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=77.46 E-value=34 Score=33.42 Aligned_cols=28 Identities=18% Similarity=0.395 Sum_probs=16.1
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 026774 72 PISEKEMNRRKDMLANLRSKVNQMASTLN 100 (233)
Q Consensus 72 ~~~~~E~~~R~~~~~~l~~~l~~l~~~~~ 100 (233)
.+|.+| +..++-+..+..+++.+...++
T Consensus 629 ~LS~AE-r~~~~EL~~~~~~l~~l~~si~ 656 (717)
T PF10168_consen 629 VLSEAE-REFKKELERMKDQLQDLKASIE 656 (717)
T ss_pred CCCHHH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 477777 3444445566666665555543
No 72
>PF11395 DUF2873: Protein of unknown function (DUF2873); InterPro: IPR021532 This entry is represented by the human SARS coronavirus, Orf7b; it is a family of uncharacterised viral proteins.
Probab=77.33 E-value=5.7 Score=22.90 Aligned_cols=10 Identities=0% Similarity=0.710 Sum_probs=4.2
Q ss_pred HHHHHHHHHH
Q 026774 221 VLVVVIYMLI 230 (233)
Q Consensus 221 ~l~v~i~~~~ 230 (233)
+.++++||++
T Consensus 23 imliif~f~l 32 (43)
T PF11395_consen 23 IMLIIFWFSL 32 (43)
T ss_pred HHHHHHHHHH
Confidence 3333444443
No 73
>PF11190 DUF2976: Protein of unknown function (DUF2976); InterPro: IPR021356 Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in a region flanked by markers of conjugative transfer and/or transposition.
Probab=77.08 E-value=11 Score=26.30 Aligned_cols=46 Identities=26% Similarity=0.344 Sum_probs=28.1
Q ss_pred HHHHHHHHHHHHHHHHhcCCCchhH-HHHHHHHHHHHHHHHHHHHHh
Q 026774 186 DSRLRRVQKNLAILNKRTKGGCTCM-CMLLAVIGIVVLVVVIYMLIK 231 (233)
Q Consensus 186 ~~~l~~~~~~l~~~~~~~~~~~~~~-~i~~l~i~lv~l~v~i~~~~k 231 (233)
-.-+..+..-+..+.+-...+..|- ....+++.+++++++||++.|
T Consensus 37 ~afi~Va~~~i~~y~eir~gK~~W~~fg~~~vVGvvLlv~viwLl~~ 83 (87)
T PF11190_consen 37 AAFIVVAKAAISTYNEIRDGKKTWGDFGATVVVGVVLLVFVIWLLTK 83 (87)
T ss_pred HHHHHHHHHHHHHHHHHHcCcccHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 3444555556666666544444443 345566777888888888876
No 74
>PF12606 RELT: Tumour necrosis factor receptor superfamily member 19; InterPro: IPR022248 The members of tumor necrosis factor receptor (TNFR) superfamily have been designated as the "guardians of the immune system" due to their roles in immune cell proliferation, differentiation, activation, and death (apoptosis). RELT (receptor expressed in lymphoid tissues) is a member of the TNFR superfamily. The messenger RNA of RELT is especially abundant in hematologic tissues such as spleen, lymph node, and peripheral blood leukocytes as well as in leukemias and lymphomas. RELT is able to activate the NF-kappaB pathway and selectively binds tumor necrosis factor receptor-associated factor 1 []. RELT like proteins 1 and 2 (RELL1 and RELL2) are two RELT homologues that bind to RELT. The expression of RELL1 at the mRNA level is ubiquitous, whereas expression of RELL2 mRNA is more restricted to particular tissues [].
Probab=76.97 E-value=3.8 Score=25.47 Aligned_cols=20 Identities=20% Similarity=0.207 Sum_probs=12.9
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 026774 212 MLLAVIGIVVLVVVIYMLIK 231 (233)
Q Consensus 212 i~~l~i~lv~l~v~i~~~~k 231 (233)
++-++|++++|+++|+-++|
T Consensus 6 iV~i~iv~~lLg~~I~~~~K 25 (50)
T PF12606_consen 6 IVSIFIVMGLLGLSICTTLK 25 (50)
T ss_pred HHHHHHHHHHHHHHHHHHhh
Confidence 34455566677777777776
No 75
>TIGR01477 RIFIN variant surface antigen, rifin family. This model represents the rifin branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of rifin sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 20 bits.
Probab=76.39 E-value=26 Score=30.99 Aligned_cols=20 Identities=35% Similarity=1.002 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHhh
Q 026774 213 LLAVIGIVVLVVVIYMLIKY 232 (233)
Q Consensus 213 ~~l~i~lv~l~v~i~~~~k~ 232 (233)
++.++++|+++|+||++++|
T Consensus 316 iIAIvvIVLIMvIIYLILRY 335 (353)
T TIGR01477 316 IIAILIIVLIMVIIYLILRY 335 (353)
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 44555666677899999876
No 76
>KOG0860 consensus Synaptobrevin/VAMP-like protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=75.48 E-value=30 Score=25.50 Aligned_cols=16 Identities=13% Similarity=0.248 Sum_probs=6.3
Q ss_pred HHHHhHhHHHHHHHHH
Q 026774 175 IDDLDQHVDVTDSRLR 190 (233)
Q Consensus 175 ld~i~~~vd~~~~~l~ 190 (233)
|..-...+.++..+|+
T Consensus 69 L~~~as~F~~~A~klk 84 (116)
T KOG0860|consen 69 LQAGASQFEKTAVKLK 84 (116)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3333334444444443
No 77
>KOG1691 consensus emp24/gp25L/p24 family of membrane trafficking proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=75.11 E-value=20 Score=29.23 Aligned_cols=71 Identities=21% Similarity=0.284 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHH
Q 026774 145 EGLEKLEETVVSTKHIALAVNEELDLHTRLIDDLDQHVDVTDSRLRRVQKNLAILNKRTKGGCTCMCMLLAVIGIVVLVV 224 (233)
Q Consensus 145 ~~l~~l~~~v~~l~~~~~~i~~ev~~Q~~~ld~i~~~vd~~~~~l~~~~~~l~~~~~~~~~~~~~~~i~~l~i~lv~l~v 224 (233)
+.|+-++--+.+|.++...|++|.. +|..=..+|+...+++.++-.|+-++.+++++.+...
T Consensus 134 eklep~E~elrrLed~~~sI~~e~~------------------YLr~REeemr~~nesTNsrv~~fSi~Sl~v~~~va~~ 195 (210)
T KOG1691|consen 134 EKLEPLEVELRRLEDLVESIHEEMY------------------YLREREEEMRNTNESTNSRVAWFSILSLVVLLSVAGW 195 (210)
T ss_pred hcCcHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHH
Confidence 4677777778888888777777763 3333344455555555555666677777666666666
Q ss_pred HHHHHHhhC
Q 026774 225 VIYMLIKYL 233 (233)
Q Consensus 225 ~i~~~~k~~ 233 (233)
=+|++=.||
T Consensus 196 QvlyLK~fF 204 (210)
T KOG1691|consen 196 QVLYLKRFF 204 (210)
T ss_pred HHHHHHHHH
Confidence 566655554
No 78
>KOG1692 consensus Putative cargo transport protein EMP24 (p24 protein family) [Intracellular trafficking, secretion, and vesicular transport]
Probab=74.84 E-value=29 Score=27.95 Aligned_cols=35 Identities=20% Similarity=0.369 Sum_probs=25.8
Q ss_pred HHHhcCCCchhHHHHHHHHHHHHHHHHHHHHHhhC
Q 026774 199 LNKRTKGGCTCMCMLLAVIGIVVLVVVIYMLIKYL 233 (233)
Q Consensus 199 ~~~~~~~~~~~~~i~~l~i~lv~l~v~i~~~~k~~ 233 (233)
..+..++|-.||+++=.++++..-++=|||+=+||
T Consensus 161 ~nEntn~RVv~wsife~~vLi~~s~~QVyYLkRfF 195 (201)
T KOG1692|consen 161 TNENTNSRVVLWSIFEALVLIAMSVLQVYYLKRFF 195 (201)
T ss_pred hhhcccceeehHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 34445567889998777777777777888888776
No 79
>PRK09793 methyl-accepting protein IV; Provisional
Probab=74.68 E-value=34 Score=31.87 Aligned_cols=16 Identities=6% Similarity=0.297 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHHHh
Q 026774 216 VIGIVVLVVVIYMLIK 231 (233)
Q Consensus 216 ~i~lv~l~v~i~~~~k 231 (233)
+++++++++++|++.+
T Consensus 197 ~~~~~l~~~~~~~~~~ 212 (533)
T PRK09793 197 IVAAIYISSALWWTRK 212 (533)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3334444444455443
No 80
>PF12669 P12: Virus attachment protein p12 family
Probab=74.65 E-value=3.3 Score=26.60 Aligned_cols=7 Identities=43% Similarity=0.482 Sum_probs=3.1
Q ss_pred HHHHHHh
Q 026774 225 VIYMLIK 231 (233)
Q Consensus 225 ~i~~~~k 231 (233)
+++.+.|
T Consensus 16 ~~r~~~k 22 (58)
T PF12669_consen 16 AIRKFIK 22 (58)
T ss_pred HHHHHHH
Confidence 3355444
No 81
>PRK02119 hypothetical protein; Provisional
Probab=74.21 E-value=24 Score=23.73 Aligned_cols=51 Identities=14% Similarity=0.272 Sum_probs=37.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHH
Q 026774 141 REQDEGLEKLEETVVSTKHIALAVNEELDLHTRLIDDLDQHVDVTDSRLRR 191 (233)
Q Consensus 141 ~~qd~~l~~l~~~v~~l~~~~~~i~~ev~~Q~~~ld~i~~~vd~~~~~l~~ 191 (233)
...++.|.+|+..+.-+-..-..+++.|-.|...|+.+...+.....++..
T Consensus 5 ~~~e~Ri~~LE~rla~QE~tie~LN~~v~~Qq~~id~L~~ql~~L~~rl~~ 55 (73)
T PRK02119 5 QNLENRIAELEMKIAFQENLLEELNQALIEQQFVIDKMQVQLRYMANKLKD 55 (73)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 344567778888888888777788888888888888887777666665544
No 82
>PHA02657 hypothetical protein; Provisional
Probab=72.33 E-value=6.8 Score=27.06 Aligned_cols=22 Identities=9% Similarity=0.443 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh
Q 026774 211 CMLLAVIGIVVLVVVIYMLIKY 232 (233)
Q Consensus 211 ~i~~l~i~lv~l~v~i~~~~k~ 232 (233)
+|.+.++.+.++++++.+++||
T Consensus 29 Vitvfv~vI~il~flLLYLvkW 50 (95)
T PHA02657 29 VFTIFIFVVCILIYLLIYLVDW 50 (95)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3433344455566666677775
No 83
>PF00523 Fusion_gly: Fusion glycoprotein F0; InterPro: IPR000776 The fusion glycoproteins from this family are found in ssRNA negative-strand viruses. This protein directs fusion of viral and cellular membranes, resulting in viral penetration, and can direct fusion of infected cells with adjoining cells, resulting in the formation of syncytia. The mature form is a dimer of polypeptides F1 and F2 linked by a disulphide bond [].; GO: 0006948 induction by virus of host cell-cell fusion; PDB: 2FYZ_D 3MAW_B 4DAG_A 1G5G_D 1SVF_A 2B9B_A 1G2C_M 3RRT_A 3RRR_D 3RKI_A ....
Probab=71.50 E-value=2.8 Score=38.77 Aligned_cols=29 Identities=10% Similarity=0.227 Sum_probs=18.6
Q ss_pred HHHHhHhHHHHHHHHHHHHHHHHHHHHhc
Q 026774 175 IDDLDQHVDVTDSRLRRVQKNLAILNKRT 203 (233)
Q Consensus 175 ld~i~~~vd~~~~~l~~~~~~l~~~~~~~ 203 (233)
|+.+.+.++++.+.++.+++-+.++....
T Consensus 440 L~~vn~sL~~A~~~L~~Sn~iL~~v~~~~ 468 (490)
T PF00523_consen 440 LGQVNNSLNNAKDLLDKSNQILDSVNPGI 468 (490)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTTT---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 45666777777778888877777655543
No 84
>KOG3065 consensus SNAP-25 (synaptosome-associated protein) component of SNARE complex [Intracellular trafficking, secretion, and vesicular transport]
Probab=71.49 E-value=62 Score=27.64 Aligned_cols=53 Identities=13% Similarity=0.140 Sum_probs=44.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHhcC
Q 026774 152 ETVVSTKHIALAVNEELDLHTRLIDDLDQHVDVTDSRLRRVQKNLAILNKRTK 204 (233)
Q Consensus 152 ~~v~~l~~~~~~i~~ev~~Q~~~ld~i~~~vd~~~~~l~~~~~~l~~~~~~~~ 204 (233)
..+.+.+..|...-.++.+|.+.|++++.++|.....++.+-+.+..+-+..+
T Consensus 86 ~~~~e~~~~g~~Tl~~L~~Q~eQL~rte~~lD~i~~d~~~~er~l~~l~~~~g 138 (273)
T KOG3065|consen 86 KLAEESREDGSRTLVMLSEQGEQLERTEKNLDDIKVDLKRAERNLTELKGLFG 138 (273)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHhHHhhhhhhHHHHHHHHHHHHHHHHHhc
Confidence 34455677788888999999999999999999999999999999888776544
No 85
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=71.41 E-value=93 Score=29.36 Aligned_cols=87 Identities=13% Similarity=0.241 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCCcCCCCCCChhhhhcccCCCchhHHHHHHHHHHHHHHHHHHHHHHH
Q 026774 75 EKEMNRRKDMLANLRSKVNQMASTLNMSNFANRDSLLGPEIKSADVMNRATGLDNQGLVGFQRQIMREQDEGLEKLEETV 154 (233)
Q Consensus 75 ~~E~~~R~~~~~~l~~~l~~l~~~~~~~~~~~r~~l~~~~~~~~~e~~~~~~~~~~~~~~~q~~~~~~qd~~l~~l~~~v 154 (233)
..|+......+..++.+.++|++.+..+. + ++ .+.+++ |.+.-+.+ +.+....-++|.|...+
T Consensus 300 ~~Eie~kEeE~e~lq~~~d~Lk~~Ie~Q~------i-----S~-~dve~m----n~Er~~l~-r~l~~i~~~~d~l~k~v 362 (581)
T KOG0995|consen 300 KSEIEEKEEEIEKLQKENDELKKQIELQG------I-----SG-EDVERM----NLERNKLK-RELNKIQSELDRLSKEV 362 (581)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcC------C-----CH-HHHHHH----HHHHHHHH-HHHHHHHHHHHHHHHHH
Confidence 45666667777777777777777765321 0 11 111111 11111111 33445556788888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 026774 155 VSTKHIALAVNEELDLHTRLIDDL 178 (233)
Q Consensus 155 ~~l~~~~~~i~~ev~~Q~~~ld~i 178 (233)
..++-.+.+...++..+-.-++.+
T Consensus 363 w~~~l~~~~~f~~le~~~~~~~~l 386 (581)
T KOG0995|consen 363 WELKLEIEDFFKELEKKFIDLNSL 386 (581)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHH
Confidence 888887777777776554444333
No 86
>PHA03386 P10 fibrous body protein; Provisional
Probab=71.37 E-value=33 Score=24.16 Aligned_cols=50 Identities=20% Similarity=0.234 Sum_probs=41.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHH
Q 026774 137 RQIMREQDEGLEKLEETVVSTKHIALAVNEELDLHTRLIDDLDQHVDVTDSRLR 190 (233)
Q Consensus 137 ~~~~~~qd~~l~~l~~~v~~l~~~~~~i~~ev~~Q~~~ld~i~~~vd~~~~~l~ 190 (233)
..-++.-|..++.|...|..+..- ..-++.|...|+.++..|++-++-|.
T Consensus 11 r~dIkavd~KVdaLQ~qV~dv~~n----~~~LDa~~~qL~~l~tkV~~Iq~iLn 60 (94)
T PHA03386 11 LDAVQEVDTKVDALQTQLNGLEED----SQPLDGLPAQLTELDTKVSDIQSILT 60 (94)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHhc----chhhhhHHHHHHHHHHHHHHHHHhcC
Confidence 456778899999999999999877 44589999999999999988776654
No 87
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=71.12 E-value=1.4e+02 Score=31.37 Aligned_cols=57 Identities=16% Similarity=0.180 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHH--HHHHHHHHHHHHHHHH
Q 026774 145 EGLEKLEETVVSTKHIALAVNEELDLHTRLIDDLDQHVDVT--DSRLRRVQKNLAILNK 201 (233)
Q Consensus 145 ~~l~~l~~~v~~l~~~~~~i~~ev~~Q~~~ld~i~~~vd~~--~~~l~~~~~~l~~~~~ 201 (233)
..++.+..-+..+..--..+..++..+...-.++..+++.- ...+.....++..+..
T Consensus 984 ~~ie~le~e~~~l~~~i~~l~kel~~~~~~kr~l~dnL~~~~~~~~l~el~~eI~~l~~ 1042 (1311)
T TIGR00606 984 AQLEECEKHQEKINEDMRLMRQDIDTQKIQERWLQDNLTLRKRENELKEVEEELKQHLK 1042 (1311)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444444444444444 4444444444444433
No 88
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=71.10 E-value=76 Score=28.25 Aligned_cols=65 Identities=14% Similarity=0.194 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHH--HHHHHHHHHHHHHHhcC
Q 026774 140 MREQDEGLEKLEETVVSTKHIALAVNEELDLHTRLIDDLDQHVDVTDS--RLRRVQKNLAILNKRTK 204 (233)
Q Consensus 140 ~~~qd~~l~~l~~~v~~l~~~~~~i~~ev~~Q~~~ld~i~~~vd~~~~--~l~~~~~~l~~~~~~~~ 204 (233)
+.+--+...+.+++|..+...-..|.++++..-.-+++=+..|..+.- +++.|-.+|+.=++...
T Consensus 282 ls~~~~~y~~~s~~V~~~t~~L~~IseeLe~vK~emeerg~~mtD~sPlv~IKqAl~kLk~EI~qMd 348 (359)
T PF10498_consen 282 LSEVQEKYKQASEGVSERTRELAEISEELEQVKQEMEERGSSMTDGSPLVKIKQALTKLKQEIKQMD 348 (359)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHHHhh
Confidence 444445667788888888888888888999888888888888888877 77788888887666543
No 89
>PF15106 TMEM156: TMEM156 protein family
Probab=70.80 E-value=5.9 Score=32.24 Aligned_cols=22 Identities=18% Similarity=0.555 Sum_probs=12.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHH
Q 026774 209 CMCMLLAVIGIVVLVVVIYMLI 230 (233)
Q Consensus 209 ~~~i~~l~i~lv~l~v~i~~~~ 230 (233)
.|.+++|+|++++++++||.++
T Consensus 177 TWYvLVllVfiflii~iI~KIl 198 (226)
T PF15106_consen 177 TWYVLVLLVFIFLIILIIYKIL 198 (226)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555556666666777654
No 90
>PRK00846 hypothetical protein; Provisional
Probab=70.80 E-value=30 Score=23.54 Aligned_cols=49 Identities=14% Similarity=0.049 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHH
Q 026774 144 DEGLEKLEETVVSTKHIALAVNEELDLHTRLIDDLDQHVDVTDSRLRRV 192 (233)
Q Consensus 144 d~~l~~l~~~v~~l~~~~~~i~~ev~~Q~~~ld~i~~~vd~~~~~l~~~ 192 (233)
++.|++|+..+.-....-..++..|-.|...|+.+...+.....+++.+
T Consensus 12 e~Ri~~LE~rlAfQe~tIe~LN~~v~~qq~~I~~L~~ql~~L~~rL~~~ 60 (77)
T PRK00846 12 EARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGKV 60 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4567788888888888888888888888888888887777766666554
No 91
>PRK00736 hypothetical protein; Provisional
Probab=70.72 E-value=28 Score=23.03 Aligned_cols=47 Identities=17% Similarity=0.299 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHH
Q 026774 145 EGLEKLEETVVSTKHIALAVNEELDLHTRLIDDLDQHVDVTDSRLRR 191 (233)
Q Consensus 145 ~~l~~l~~~v~~l~~~~~~i~~ev~~Q~~~ld~i~~~vd~~~~~l~~ 191 (233)
+.|.+|+..+.-+-..-..+++.|-.|...|+.+...+.....++..
T Consensus 5 ~Ri~~LE~klafqe~tie~Ln~~v~~Qq~~i~~L~~ql~~L~~rl~~ 51 (68)
T PRK00736 5 ERLTELEIRVAEQEKTIEELSDQLAEQWKTVEQMRKKLDALTERFLS 51 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34777777777777777777888888888888888777666666644
No 92
>PF10661 EssA: WXG100 protein secretion system (Wss), protein EssA; InterPro: IPR018920 The Wss (WXG100 protein secretion system) in Staphylococcus aureus seems to be encoded by a locus of eight ORFs, called ess (eSAT-6 secretion system) []. This locus encodes, amongst several other proteins, EssA, a protein predicted to possess one transmembrane domain. Due to its predicted membrane location and its absolute requirement for WXG100 protein secretion, it has been speculated that EssA could form a secretion apparatus in conjunction with YukC and YukAB. Proteins homologous to EssA, YukC, EsaA and YukD were absent from mycobacteria []. Members of this family are associated with type VII secretion of WXG100 family targets in the Firmicutes, but not in the Actinobacteria. This highly divergent protein family consists largely of a central region of highly polar low-complexity sequence containing occasional LF motifs in weak repeats about 17 residues in length, flanked by hydrophobic N- and C-terminal regions.
Probab=69.93 E-value=7.9 Score=29.79 Aligned_cols=17 Identities=12% Similarity=0.169 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHh
Q 026774 215 AVIGIVVLVVVIYMLIK 231 (233)
Q Consensus 215 l~i~lv~l~v~i~~~~k 231 (233)
+..++++++++||.+.+
T Consensus 125 i~g~ll~i~~giy~~~r 141 (145)
T PF10661_consen 125 IGGILLAICGGIYVVLR 141 (145)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33455666678887764
No 93
>PF01105 EMP24_GP25L: emp24/gp25L/p24 family/GOLD; InterPro: IPR009038 The GOLD (for Golgi dynamics) domain is a protein module found in several eukaryotic Golgi and lipid-traffic proteins. It is typically between 90 and 150 amino acids long. Most of the size difference observed in the GOLD-domain superfamily is traceable to a single large low-complexity insert that is seen in some versions of the domain. With the exception of the p24 proteins, which have a simple architecture with the GOLD domain as their only globular domain, all other GOLD-domain proteins contain additional conserved globular domains. In these proteins, the GOLD domain co-occurs with lipid-, sterol- or fatty acid-binding domains such as PH, CRAL-TRIO, FYVE oxysterol binding- and acyl CoA-binding domains, suggesting that these proteins may interact with membranes. The GOLD domain can also be found associated with a RUN domain, which may have a role in the interaction of various proteins with cytoskeletal filaments. The GOLD domain is predicted to mediate diverse protein-protein interactions []. A secondary structure prediction for the GOLD domain reveals that it is likely to adopt a compact all-beta-fold structure with six to seven strands. Most of the sequence conservation is centred on the hydrophobic cores that support these predicted strands. The predicted secondary-structure elements and the size of the conserved core of the domain suggests that it may form a beta- sandwich fold with the strands arranged in two beta sheets stacked on each other []. Some proteins known to contain a GOLD domain are listed below: Eukaryotic proteins of the p24 family. Animal Sec14-like proteins. They are involved in secretion. Human Golgi resident protein GCP60. It interacts with the Golgi integral membrane protein Giantin. Yeast oxysterol-binding protein homologue 3 (OSH3). ; GO: 0006810 transport, 0016021 integral to membrane; PDB: 1P23_A 1M23_A.
Probab=68.74 E-value=1.5 Score=34.03 Aligned_cols=40 Identities=25% Similarity=0.329 Sum_probs=2.8
Q ss_pred HHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHHHhhC
Q 026774 194 KNLAILNKRTKGGCTCMCMLLAVIGIVVLVVVIYMLIKYL 233 (233)
Q Consensus 194 ~~l~~~~~~~~~~~~~~~i~~l~i~lv~l~v~i~~~~k~~ 233 (233)
.+.....+....+..+|.++-+++++++.++=+|++-|||
T Consensus 143 ~~~~~~~es~~~~i~~~si~~~~vli~~~~~Qv~~lk~~f 182 (183)
T PF01105_consen 143 ERHRQLNESTNSRIMWWSIIQIVVLILVSVWQVYYLKKFF 182 (183)
T ss_dssp -----------------------------------HHHHH
T ss_pred HHHHHHHHHhhheEEhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3334444544454555555555555555555556665554
No 94
>PRK04325 hypothetical protein; Provisional
Probab=68.69 E-value=33 Score=23.09 Aligned_cols=47 Identities=13% Similarity=0.239 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHH
Q 026774 145 EGLEKLEETVVSTKHIALAVNEELDLHTRLIDDLDQHVDVTDSRLRR 191 (233)
Q Consensus 145 ~~l~~l~~~v~~l~~~~~~i~~ev~~Q~~~ld~i~~~vd~~~~~l~~ 191 (233)
+.|.+|+..+.-+-..-..+++.|-.|...|+.+...+.....++..
T Consensus 9 ~Ri~~LE~klAfQE~tIe~LN~vv~~Qq~~I~~L~~ql~~L~~rl~~ 55 (74)
T PRK04325 9 DRITELEIQLAFQEDLIDGLNATVARQQQTLDLLQAQLRLLYQQMRD 55 (74)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44777777777777777777888888888888887776666555544
No 95
>PF15145 DUF4577: Domain of unknown function (DUF4577)
Probab=68.52 E-value=6 Score=28.80 Aligned_cols=19 Identities=16% Similarity=0.705 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 026774 212 MLLAVIGIVVLVVVIYMLI 230 (233)
Q Consensus 212 i~~l~i~lv~l~v~i~~~~ 230 (233)
|++|+|.+.++.|+||+++
T Consensus 68 ii~LivSLaLVsFvIFLii 86 (128)
T PF15145_consen 68 IIVLIVSLALVSFVIFLII 86 (128)
T ss_pred HHHHHHHHHHHHHHHHhee
Confidence 4556666777777777654
No 96
>PF03904 DUF334: Domain of unknown function (DUF334); InterPro: IPR005602 This is a family of proteins found in Staphylococcus aureus plasmid with no characterised function.
Probab=68.51 E-value=67 Score=26.58 Aligned_cols=12 Identities=0% Similarity=0.097 Sum_probs=4.9
Q ss_pred HHHHHHHHhcCC
Q 026774 194 KNLAILNKRTKG 205 (233)
Q Consensus 194 ~~l~~~~~~~~~ 205 (233)
++++...+.+..
T Consensus 134 ~evK~~~E~y~k 145 (230)
T PF03904_consen 134 QEVKQSHEKYQK 145 (230)
T ss_pred HHHHHHHHHHHH
Confidence 334444444434
No 97
>COG5415 Predicted integral membrane metal-binding protein [General function prediction only]
Probab=68.50 E-value=27 Score=28.57 Aligned_cols=26 Identities=19% Similarity=0.341 Sum_probs=13.4
Q ss_pred HHHHhHhHHHHHHHHHHHHHHHHHHH
Q 026774 175 IDDLDQHVDVTDSRLRRVQKNLAILN 200 (233)
Q Consensus 175 ld~i~~~vd~~~~~l~~~~~~l~~~~ 200 (233)
|++|+..+..++-++++....++++.
T Consensus 17 L~rle~qi~q~~~~~~~~qs~l~~~~ 42 (251)
T COG5415 17 LSRLESQIHQLDVALKKSQSILSQWQ 42 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45555555555555555555444443
No 98
>COG3763 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=68.24 E-value=10 Score=25.20 Aligned_cols=19 Identities=16% Similarity=0.396 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 026774 212 MLLAVIGIVVLVVVIYMLI 230 (233)
Q Consensus 212 i~~l~i~lv~l~v~i~~~~ 230 (233)
|++.++++++.++..||++
T Consensus 7 il~ivl~ll~G~~~G~fia 25 (71)
T COG3763 7 ILLIVLALLAGLIGGFFIA 25 (71)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444445555555666654
No 99
>PF09125 COX2-transmemb: Cytochrome C oxidase subunit II, transmembrane; InterPro: IPR015209 This N-terminal domain forms the transmembrane region in subunit II of cytochrome c oxidase from Thermus thermophilus. This domain adopts a tertiary structure consisting of two antiparallel transmembrane helices, in a transmembrane helix hairpin fold []. ; PDB: 1EHK_B 2QPE_B 3S8F_B 4EV3_B 3BVD_B 3S8G_B 3EH3_B 3S3C_B 3S39_B 3QJQ_B ....
Probab=67.43 E-value=14 Score=21.29 Aligned_cols=19 Identities=16% Similarity=0.294 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 026774 211 CMLLAVIGIVVLVVVIYML 229 (233)
Q Consensus 211 ~i~~l~i~lv~l~v~i~~~ 229 (233)
+++-|+.++|+++++.|.+
T Consensus 17 i~F~l~mi~vFi~li~ytl 35 (38)
T PF09125_consen 17 IAFALAMILVFIALIGYTL 35 (38)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3333333444444455554
No 100
>PRK00295 hypothetical protein; Provisional
Probab=67.31 E-value=33 Score=22.64 Aligned_cols=47 Identities=21% Similarity=0.234 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHH
Q 026774 145 EGLEKLEETVVSTKHIALAVNEELDLHTRLIDDLDQHVDVTDSRLRR 191 (233)
Q Consensus 145 ~~l~~l~~~v~~l~~~~~~i~~ev~~Q~~~ld~i~~~vd~~~~~l~~ 191 (233)
+.|.+|+..+.-+-..-..+++.|-.|...|+.+...+.....++..
T Consensus 5 ~Ri~~LE~kla~qE~tie~Ln~~v~~Qq~~I~~L~~ql~~L~~rl~~ 51 (68)
T PRK00295 5 ERVTELESRQAFQDDTIQALNDVLVEQQRVIERLQLQMAALIKRQEE 51 (68)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34777777777777777777778888888888888777666666654
No 101
>PRK04406 hypothetical protein; Provisional
Probab=66.09 E-value=38 Score=22.87 Aligned_cols=50 Identities=14% Similarity=0.282 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHH
Q 026774 142 EQDEGLEKLEETVVSTKHIALAVNEELDLHTRLIDDLDQHVDVTDSRLRR 191 (233)
Q Consensus 142 ~qd~~l~~l~~~v~~l~~~~~~i~~ev~~Q~~~ld~i~~~vd~~~~~l~~ 191 (233)
..++.|.+|+..+.-+-..-..+++.|-.|...|+.+...+.....++..
T Consensus 8 ~le~Ri~~LE~~lAfQE~tIe~LN~~v~~Qq~~I~~L~~ql~~L~~rl~~ 57 (75)
T PRK04406 8 QLEERINDLECQLAFQEQTIEELNDALSQQQLLITKMQDQMKYVVGKVKN 57 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34567778888888777777777888888888888877776666555543
No 102
>KOG0859 consensus Synaptobrevin/VAMP-like protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=64.71 E-value=24 Score=28.53 Aligned_cols=13 Identities=23% Similarity=0.378 Sum_probs=5.6
Q ss_pred HHHHHHHHHHHHH
Q 026774 148 EKLEETVVSTKHI 160 (233)
Q Consensus 148 ~~l~~~v~~l~~~ 160 (233)
..+...|.++|.+
T Consensus 128 skvkaqv~evk~v 140 (217)
T KOG0859|consen 128 AKVKAQVTEVKGV 140 (217)
T ss_pred HHHHHHHHHHHHH
Confidence 3334444444443
No 103
>PF05957 DUF883: Bacterial protein of unknown function (DUF883); InterPro: IPR010279 This family consists of several bacterial proteins of unknown function that include the Escherichia coli genes for ElaB, YgaM and YqjD.
Probab=64.64 E-value=45 Score=23.22 Aligned_cols=25 Identities=20% Similarity=0.163 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 026774 144 DEGLEKLEETVVSTKHIALAVNEEL 168 (233)
Q Consensus 144 d~~l~~l~~~v~~l~~~~~~i~~ev 168 (233)
+.-.+++...+......+....+++
T Consensus 8 ~~l~~d~~~l~~~~~~~~~~~~~~~ 32 (94)
T PF05957_consen 8 EQLRADLEDLARSAADLAGEKADEA 32 (94)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 3344444444444444444444444
No 104
>PF04678 DUF607: Protein of unknown function, DUF607; InterPro: IPR006769 This entry represents the C-terminal domain of coiled-coil domain containing protein 109.
Probab=64.14 E-value=60 Score=25.76 Aligned_cols=36 Identities=8% Similarity=0.108 Sum_probs=17.2
Q ss_pred HHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHH
Q 026774 193 QKNLAILNKRTKGGCTCMCMLLAVIGIVVLVVVIYM 228 (233)
Q Consensus 193 ~~~l~~~~~~~~~~~~~~~i~~l~i~lv~l~v~i~~ 228 (233)
..++.....+...+..|+.++++++-..+++-+.|+
T Consensus 80 k~~id~~A~~~~~~~~w~gl~~l~~q~~~l~rLTf~ 115 (180)
T PF04678_consen 80 KQEIDEKAEKRARRLLWGGLALLVVQFGILARLTFW 115 (180)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 333443333333334444555555555555555554
No 105
>PF04639 Baculo_E56: Baculoviral E56 protein, specific to ODV envelope; InterPro: IPR006733 This family represents the E56 protein, which is localized to the occlusion derived virus (ODV) envelope, but not to the budded virus (BV) envelope []. Signals necessary for transport and/or retention into this structure are believed to be found within the C-terminal portion of ODV-E56.; GO: 0019031 viral envelope
Probab=64.03 E-value=4.3 Score=34.60 Aligned_cols=27 Identities=22% Similarity=0.499 Sum_probs=17.1
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHhhC
Q 026774 207 CTCMCMLLAVIGIVVLVVVIYMLIKYL 233 (233)
Q Consensus 207 ~~~~~i~~l~i~lv~l~v~i~~~~k~~ 233 (233)
-+++-+++++.++++++|++|++.|++
T Consensus 275 ~~l~piil~IG~vl~i~~Ig~~ifK~~ 301 (305)
T PF04639_consen 275 DSLLPIILIIGGVLLIVFIGYFIFKRL 301 (305)
T ss_pred hhhhHHHHHHHHHHHHHHhhheeeEee
Confidence 344555555666666677777777763
No 106
>PF04277 OAD_gamma: Oxaloacetate decarboxylase, gamma chain ; InterPro: IPR005899 This family comprises distantly related, low complexity, hydrophobic small subunits of several related sodium ion-pumping decarboxylases. These include oxaloacetate decarboxylase gamma subunit and methylmalonyl-CoA decarboxylase delta subunit [].; GO: 0008948 oxaloacetate decarboxylase activity, 0015081 sodium ion transmembrane transporter activity, 0071436 sodium ion export, 0016020 membrane
Probab=63.40 E-value=13 Score=25.05 Aligned_cols=20 Identities=20% Similarity=0.454 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHhh
Q 026774 213 LLAVIGIVVLVVVIYMLIKY 232 (233)
Q Consensus 213 ~~l~i~lv~l~v~i~~~~k~ 232 (233)
.+.++++++|.++++++.|+
T Consensus 13 ~iVF~~L~lL~~~i~l~~~~ 32 (79)
T PF04277_consen 13 GIVFLVLILLILVISLMSKL 32 (79)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33344455555566655554
No 107
>KOG1693 consensus emp24/gp25L/p24 family of membrane trafficking proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=63.35 E-value=12 Score=30.21 Aligned_cols=28 Identities=21% Similarity=0.443 Sum_probs=15.3
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHhhC
Q 026774 205 GGCTCMCMLLAVIGIVVLVVVIYMLIKYL 233 (233)
Q Consensus 205 ~~~~~~~i~~l~i~lv~l~v~i~~~~k~~ 233 (233)
+|-.||-+... +++|++-++-.+++|||
T Consensus 173 ~Rv~~~Sl~e~-~~vv~iSi~Qv~ilk~f 200 (209)
T KOG1693|consen 173 SRVTWWSLLEI-IAVVVISIAQVFILKFF 200 (209)
T ss_pred chhhHHHHHHH-HHHHHHHHHHHHHHHHH
Confidence 34556655433 34455555666777764
No 108
>PF05399 EVI2A: Ectropic viral integration site 2A protein (EVI2A); InterPro: IPR008608 This family contains several mammalian ectropic viral integration site 2A (EVI2A) proteins. The function of this protein is unknown although it is thought to be a membrane protein and may function as an oncogene in retrovirus induced myeloid tumours [, ].; GO: 0016021 integral to membrane
Probab=62.15 E-value=13 Score=30.26 Aligned_cols=17 Identities=24% Similarity=0.585 Sum_probs=7.2
Q ss_pred HHHHHHHHHHHHHHHHH
Q 026774 213 LLAVIGIVVLVVVIYML 229 (233)
Q Consensus 213 ~~l~i~lv~l~v~i~~~ 229 (233)
+++||++++|+..+.|+
T Consensus 133 ClIIIAVLfLICT~LfL 149 (227)
T PF05399_consen 133 CLIIIAVLFLICTLLFL 149 (227)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33344444444444333
No 109
>PF06716 DUF1201: Protein of unknown function (DUF1201); InterPro: IPR009591 This entry consists of several Beet yellows virus (BYV) putative membrane-binding proteins of around 54 residues in length. The function of this currently unknown.
Probab=62.06 E-value=14 Score=22.46 Aligned_cols=13 Identities=38% Similarity=0.713 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHh
Q 026774 219 IVVLVVVIYMLIK 231 (233)
Q Consensus 219 lv~l~v~i~~~~k 231 (233)
+..+.++||++.|
T Consensus 21 l~~~~~F~~F~~K 33 (54)
T PF06716_consen 21 LFCLVVFIWFVYK 33 (54)
T ss_pred HHHHHHHHHHHHH
Confidence 3345556777766
No 110
>PF11337 DUF3139: Protein of unknown function (DUF3139); InterPro: IPR021486 This family of proteins with unknown function appears to be restricted to Firmicutes.
Probab=61.55 E-value=12 Score=25.88 Aligned_cols=6 Identities=0% Similarity=0.329 Sum_probs=2.2
Q ss_pred HHHHHH
Q 026774 222 LVVVIY 227 (233)
Q Consensus 222 l~v~i~ 227 (233)
+++.+|
T Consensus 20 ~~~~~~ 25 (85)
T PF11337_consen 20 IGIYYF 25 (85)
T ss_pred HHHHHh
Confidence 333333
No 111
>PRK15048 methyl-accepting chemotaxis protein II; Provisional
Probab=61.52 E-value=93 Score=29.01 Aligned_cols=15 Identities=20% Similarity=0.408 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHHH
Q 026774 81 RKDMLANLRSKVNQM 95 (233)
Q Consensus 81 R~~~~~~l~~~l~~l 95 (233)
+...+......+.+.
T Consensus 86 ~~~~~~~~~~~~~~~ 100 (553)
T PRK15048 86 KVELLDSARKTLAQA 100 (553)
T ss_pred HHHHHHHHHHHHHHH
Confidence 444444444444443
No 112
>COG4640 Predicted membrane protein [Function unknown]
Probab=61.36 E-value=13 Score=33.25 Aligned_cols=16 Identities=19% Similarity=0.579 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHhhC
Q 026774 218 GIVVLVVVIYMLIKYL 233 (233)
Q Consensus 218 ~lv~l~v~i~~~~k~~ 233 (233)
+++||+++.|++.|.|
T Consensus 60 ~~lIlii~~~~fgk~f 75 (465)
T COG4640 60 FILILIIILFFFGKNF 75 (465)
T ss_pred HHHHHHHHHHHHhhcc
Confidence 3444444555555543
No 113
>KOG0862 consensus Synaptobrevin/VAMP-like protein SEC22 [Intracellular trafficking, secretion, and vesicular transport]
Probab=61.11 E-value=72 Score=26.19 Aligned_cols=42 Identities=14% Similarity=0.198 Sum_probs=25.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHH
Q 026774 145 EGLEKLEETVVSTKHIALAVNEELDLHTRLIDDLDQHVDVTD 186 (233)
Q Consensus 145 ~~l~~l~~~v~~l~~~~~~i~~ev~~Q~~~ld~i~~~vd~~~ 186 (233)
..+..+...+..++.+...=-++|..-++.|+.+...-.+..
T Consensus 134 ~n~~~~n~el~~v~~im~~niedvl~rg~~l~~l~~~~s~l~ 175 (216)
T KOG0862|consen 134 RNLLKLNQELQDVQRIMVENLEDVLQRGEVLNALSSMASELS 175 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHhhchHHHhhhhhhhccc
Confidence 455666666666666665555666666677766665544433
No 114
>PLN03160 uncharacterized protein; Provisional
Probab=60.67 E-value=2.5 Score=34.78 Aligned_cols=29 Identities=14% Similarity=0.254 Sum_probs=14.5
Q ss_pred HhcCCCchhHHHHHHHHHHHHHHHHHHHH
Q 026774 201 KRTKGGCTCMCMLLAVIGIVVLVVVIYML 229 (233)
Q Consensus 201 ~~~~~~~~~~~i~~l~i~lv~l~v~i~~~ 229 (233)
++-..+|..|++.+++++++++++++|++
T Consensus 33 r~~~~~c~~~~~a~~l~l~~v~~~l~~~v 61 (219)
T PLN03160 33 RRNCIKCCGCITATLLILATTILVLVFTV 61 (219)
T ss_pred cccceEEHHHHHHHHHHHHHHHHheeeEE
Confidence 44566675555444444444444444433
No 115
>PF13747 DUF4164: Domain of unknown function (DUF4164)
Probab=59.96 E-value=57 Score=22.79 Aligned_cols=55 Identities=16% Similarity=0.178 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHH
Q 026774 147 LEKLEETVVSTKHIALAVNEELDLHTRLIDDLDQHVDVTDSRLRRVQKNLAILNK 201 (233)
Q Consensus 147 l~~l~~~v~~l~~~~~~i~~ev~~Q~~~ld~i~~~vd~~~~~l~~~~~~l~~~~~ 201 (233)
.+.+...|..|..--..+..+++....-...++..-..+..+|+.++..++.++.
T Consensus 34 ~~~~e~ei~~l~~dr~rLa~eLD~~~ar~~~Le~~~~Evs~rL~~a~e~Ir~vL~ 88 (89)
T PF13747_consen 34 RDELEEEIQRLDADRSRLAQELDQAEARANRLEEANREVSRRLDSAIETIRAVLD 88 (89)
T ss_pred hhhHHHHHHHHHhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3566666666666666677778777777788888888888888888887776654
No 116
>PF12751 Vac7: Vacuolar segregation subunit 7; InterPro: IPR024260 Vac7 is localised at the vacuole membrane, a location which is consistent with its involvement in vacuole morphology and inheritance []. Vac7 has been shown to function as an upstream regulator of the Fab1 lipid kinase pathway []. The Fab1 lipid pathway is important for correct regulation of membrane trafficking events.
Probab=59.58 E-value=9.7 Score=33.94 Aligned_cols=15 Identities=20% Similarity=0.596 Sum_probs=6.6
Q ss_pred HHHHHHHHHHHHHHH
Q 026774 210 MCMLLAVIGIVVLVV 224 (233)
Q Consensus 210 ~~i~~l~i~lv~l~v 224 (233)
+|+++.+++|+++++
T Consensus 304 ~c~~~~i~~lL~ig~ 318 (387)
T PF12751_consen 304 SCIYLSILLLLVIGF 318 (387)
T ss_pred HHHHHHHHHHHHHHH
Confidence 355444444444433
No 117
>PF15188 CCDC-167: Coiled-coil domain-containing protein 167
Probab=59.02 E-value=31 Score=23.99 Aligned_cols=23 Identities=22% Similarity=0.417 Sum_probs=13.2
Q ss_pred HhHHHHHHHHHHHHHHHHHHHHh
Q 026774 180 QHVDVTDSRLRRVQKNLAILNKR 202 (233)
Q Consensus 180 ~~vd~~~~~l~~~~~~l~~~~~~ 202 (233)
..+......+..--++++.+-+.
T Consensus 43 ~E~~~l~~~l~~~E~eL~~LrkE 65 (85)
T PF15188_consen 43 KELNELKEKLENNEKELKLLRKE 65 (85)
T ss_pred HHHHHHHHHhhccHHHHHHHHHh
Confidence 44455555555556666666664
No 118
>PRK02793 phi X174 lysis protein; Provisional
Probab=58.94 E-value=52 Score=21.99 Aligned_cols=48 Identities=17% Similarity=0.268 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHH
Q 026774 144 DEGLEKLEETVVSTKHIALAVNEELDLHTRLIDDLDQHVDVTDSRLRR 191 (233)
Q Consensus 144 d~~l~~l~~~v~~l~~~~~~i~~ev~~Q~~~ld~i~~~vd~~~~~l~~ 191 (233)
++.|.+|+..+.-+-..-..+++.|-.|...|+.+...+.....++..
T Consensus 7 e~Ri~~LE~~lafQe~tIe~Ln~~v~~Qq~~I~~L~~~l~~L~~rl~~ 54 (72)
T PRK02793 7 EARLAELESRLAFQEITIEELNVTVTAHEMEMAKLRDHLRLLTEKLKA 54 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 456667777777777777777777777887777777666665555543
No 119
>COG4575 ElaB Uncharacterized conserved protein [Function unknown]
Probab=58.55 E-value=67 Score=23.18 Aligned_cols=76 Identities=17% Similarity=0.173 Sum_probs=43.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhHhHHHHHHHHHH-HHHHHHHHHHhcCCCchhHHHHH
Q 026774 138 QIMREQDEGLEKLEETVVSTKHIALAVNEELDLHTR-LIDDLDQHVDVTDSRLRR-VQKNLAILNKRTKGGCTCMCMLL 214 (233)
Q Consensus 138 ~~~~~qd~~l~~l~~~v~~l~~~~~~i~~ev~~Q~~-~ld~i~~~vd~~~~~l~~-~~~~l~~~~~~~~~~~~~~~i~~ 214 (233)
+++.+...-++.+++.+..-...+.+=..++..+.+ .|.+.-..+..+...+.. +..-+...-.+... ..||.|.+
T Consensus 12 ~l~~el~~L~d~lEevL~ssg~~a~~e~~~lR~r~~~~Lk~~r~rl~~~~d~v~~~sk~a~~~tD~yV~e-~PWq~VGv 89 (104)
T COG4575 12 QLLAELQELLDTLEEVLKSSGSLAGDEAEELRSKAESALKEARDRLGDTGDAVVQRSKAAADATDDYVRE-NPWQGVGV 89 (104)
T ss_pred HHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHc-CCchHHHH
Confidence 455555566677777776666777776777766654 666666666666444433 33333333344444 44555554
No 120
>PF13955 Fst_toxin: Toxin Fst, type I toxin-antitoxin system; PDB: 2KV5_A.
Probab=58.30 E-value=23 Score=17.76 Aligned_cols=20 Identities=25% Similarity=0.446 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHhhC
Q 026774 214 LAVIGIVVLVVVIYMLIKYL 233 (233)
Q Consensus 214 ~l~i~lv~l~v~i~~~~k~~ 233 (233)
.++|+=+++.+++-.+.+||
T Consensus 2 ~~iIaPi~VGvvl~l~~~wL 21 (21)
T PF13955_consen 2 TTIIAPIVVGVVLTLFDHWL 21 (21)
T ss_dssp HHHHHHHHHHHHHHHHHHHT
T ss_pred ceehhhHHHHHHHHHHHhhC
Confidence 34566667777777777765
No 121
>PF09889 DUF2116: Uncharacterized protein containing a Zn-ribbon (DUF2116); InterPro: IPR019216 This entry contains various hypothetical prokaryotic proteins whose functions are unknown. They contain a conserved zinc ribbon motif in the N-terminal part and a predicted transmembrane segment in the C-terminal part.
Probab=58.22 E-value=14 Score=23.79 Aligned_cols=6 Identities=17% Similarity=0.423 Sum_probs=2.1
Q ss_pred HHHHHH
Q 026774 220 VVLVVV 225 (233)
Q Consensus 220 v~l~v~ 225 (233)
++.+++
T Consensus 51 ~v~~~~ 56 (59)
T PF09889_consen 51 AVWIFM 56 (59)
T ss_pred HHHHHH
Confidence 333333
No 122
>PF01519 DUF16: Protein of unknown function DUF16; InterPro: IPR002862 Proteins that contain this domain are of unknown function. It appears to be confined to proteins from Mycoplasma pneumoniae [].; PDB: 2BA2_C.
Probab=58.21 E-value=67 Score=23.09 Aligned_cols=55 Identities=18% Similarity=0.244 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHH
Q 026774 145 EGLEKLEETVVST--KHIALAVNEELDLHTRLIDDLDQHVDVTDSRLRRVQKNLAIL 199 (233)
Q Consensus 145 ~~l~~l~~~v~~l--~~~~~~i~~ev~~Q~~~ld~i~~~vd~~~~~l~~~~~~l~~~ 199 (233)
+.|..++..+..+ .+--..+...|+.|++.|..+...+......++.-...|..+
T Consensus 37 q~L~kiE~~~~~l~qgeqI~kL~e~V~~QGEqIkel~~e~k~qgktL~~I~~~L~~i 93 (102)
T PF01519_consen 37 QRLTKIENKLDQLAQGEQINKLTEKVDKQGEQIKELQVEQKAQGKTLQLILKTLQSI 93 (102)
T ss_dssp TB-BHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444422 222222234556666666666666655555554444444433
No 123
>PF08370 PDR_assoc: Plant PDR ABC transporter associated; InterPro: IPR013581 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). This domain is found on the C terminus of ABC-2 type transporter domains (IPR013525 from INTERPRO). It seems to be associated with the plant pleiotropic drug resistance (PDR) protein family of ABC transporters. Like in yeast, plant PDR ABC transporters may also play a role in the transport of antifungal agents [] (see also IPR010929 from INTERPRO). The PDR family is characterised by a configuration in which the ABC domain is nearer the N terminus of the protein than the transmembrane domain [].
Probab=58.14 E-value=17 Score=23.92 Aligned_cols=28 Identities=14% Similarity=0.107 Sum_probs=19.8
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHhhC
Q 026774 206 GCTCMCMLLAVIGIVVLVVVIYMLIKYL 233 (233)
Q Consensus 206 ~~~~~~i~~l~i~lv~l~v~i~~~~k~~ 233 (233)
.|.|.++..|+...+++-++..+.+.||
T Consensus 27 ~WyWIgvgaL~G~~vlFNil~~laL~yL 54 (65)
T PF08370_consen 27 YWYWIGVGALLGFIVLFNILFTLALTYL 54 (65)
T ss_pred cEEeehHHHHHHHHHHHHHHHHHHHHhc
Confidence 4777788777777777777777776664
No 124
>PF11119 DUF2633: Protein of unknown function (DUF2633); InterPro: IPR022576 This family is conserved largely in Proteobacteria. Several members are named as YfgG. The function is not known.
Probab=57.89 E-value=21 Score=22.91 Aligned_cols=24 Identities=21% Similarity=0.279 Sum_probs=12.2
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHH
Q 026774 207 CTCMCMLLAVIGIVVLVVVIYMLI 230 (233)
Q Consensus 207 ~~~~~i~~l~i~lv~l~v~i~~~~ 230 (233)
..+.-+++||-++++++-++|..+
T Consensus 7 ~~mtriVLLISfiIlfgRl~Y~~I 30 (59)
T PF11119_consen 7 SRMTRIVLLISFIILFGRLIYSAI 30 (59)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555444444454777653
No 125
>PRK10935 nitrate/nitrite sensor protein NarQ; Provisional
Probab=57.89 E-value=67 Score=29.68 Aligned_cols=15 Identities=0% Similarity=0.153 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHHHh
Q 026774 217 IGIVVLVVVIYMLIK 231 (233)
Q Consensus 217 i~lv~l~v~i~~~~k 231 (233)
+++++++++.|++.+
T Consensus 160 ~~~~~~~~~~~~~~r 174 (565)
T PRK10935 160 LILTLVFFTVRFTRR 174 (565)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333344444455444
No 126
>PF03670 UPF0184: Uncharacterised protein family (UPF0184); InterPro: IPR022788 This family of proteins has no known function.
Probab=57.33 E-value=35 Score=23.56 Aligned_cols=19 Identities=11% Similarity=0.135 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 026774 140 MREQDEGLEKLEETVVSTK 158 (233)
Q Consensus 140 ~~~qd~~l~~l~~~v~~l~ 158 (233)
+...+..||.|...+..|.
T Consensus 28 ~~~ins~LD~Lns~LD~LE 46 (83)
T PF03670_consen 28 YAAINSMLDQLNSCLDHLE 46 (83)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4444555555544444333
No 127
>KOG3251 consensus Golgi SNAP receptor complex member [Intracellular trafficking, secretion, and vesicular transport]
Probab=57.24 E-value=1.1e+02 Score=25.15 Aligned_cols=15 Identities=27% Similarity=0.330 Sum_probs=6.9
Q ss_pred HHHHHHhHHHHHHHH
Q 026774 50 ITILGTRLDSLQSLL 64 (233)
Q Consensus 50 l~~l~~~l~~L~~~l 64 (233)
..++..++..|+..+
T Consensus 71 ~dQl~~d~~~l~~~l 85 (213)
T KOG3251|consen 71 VDQLLEDVEHLQTSL 85 (213)
T ss_pred HHHHHHHHHHHHHHH
Confidence 444444444444443
No 128
>PRK11875 psbT photosystem II reaction center protein T; Reviewed
Probab=57.01 E-value=14 Score=20.35 Aligned_cols=17 Identities=24% Similarity=0.497 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHH
Q 026774 212 MLLAVIGIVVLVVVIYM 228 (233)
Q Consensus 212 i~~l~i~lv~l~v~i~~ 228 (233)
.++|+..+.++++.|++
T Consensus 7 tfll~~tlgiiFFAIfF 23 (31)
T PRK11875 7 ILILTLALVTLFFAIAF 23 (31)
T ss_pred HHHHHHHHHHHHHhhhc
Confidence 34555556666666654
No 129
>KOG3950 consensus Gamma/delta sarcoglycan [Cytoskeleton]
Probab=57.01 E-value=11 Score=31.50 Aligned_cols=26 Identities=31% Similarity=0.447 Sum_probs=14.6
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHhh
Q 026774 207 CTCMCMLLAVIGIVVLVVVIYMLIKY 232 (233)
Q Consensus 207 ~~~~~i~~l~i~lv~l~v~i~~~~k~ 232 (233)
|.+..+++|.|++|+=+.+-+|++|+
T Consensus 36 cLY~fvLlL~i~ivvNLalTiWIlkV 61 (292)
T KOG3950|consen 36 CLYTFVLLLMILIVVNLALTIWILKV 61 (292)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 43334455555555555666777775
No 130
>PF12495 Vip3A_N: Vegetative insecticide protein 3A N terminal ; InterPro: IPR022180 This family of proteins is found in bacteria. Proteins in this family are typically between 170 and 789 amino acids in length. The family is found in association with PF02018 from PFAM. Vip3A represents a novel class of proteins insecticidal to lepidopteran insect larvae.
Probab=56.98 E-value=80 Score=23.56 Aligned_cols=63 Identities=8% Similarity=0.238 Sum_probs=40.2
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHH
Q 026774 128 DNQGLVGFQRQIMREQDEGLEKLEETVVSTK-------HIALAVNEELDLHTRLIDDLDQHVDVTDSRLRR 191 (233)
Q Consensus 128 ~~~~~~~~q~~~~~~qd~~l~~l~~~v~~l~-------~~~~~i~~ev~~Q~~~ld~i~~~vd~~~~~l~~ 191 (233)
.-.+++..| +++.+....||.+.+.+..+- ++...+-.-..+||.+|.++....+.....+..
T Consensus 36 tldeilknq-~lln~is~kldging~l~dliaqgnln~el~ke~lkianeqn~~ln~vn~~l~~in~~l~~ 105 (177)
T PF12495_consen 36 TLDEILKNQ-QLLNQISDKLDGINGSLNDLIAQGNLNSELSKEILKIANEQNQMLNNVNNQLNSINSMLNT 105 (177)
T ss_pred cHHHHHHhH-HHHHHhcccccccCCcHHHHHHcCCccHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 334455544 556666666777666666653 344455555678999999888888877665554
No 131
>PRK13415 flagella biosynthesis protein FliZ; Provisional
Probab=56.97 E-value=16 Score=29.97 Aligned_cols=27 Identities=19% Similarity=0.460 Sum_probs=15.6
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHhhC
Q 026774 207 CTCMCMLLAVIGIVVLVVVIYMLIKYL 233 (233)
Q Consensus 207 ~~~~~i~~l~i~lv~l~v~i~~~~k~~ 233 (233)
-..|-++=++.++++++++||+++|||
T Consensus 63 ~s~~~l~qmi~aL~~VI~Liy~l~rwL 89 (219)
T PRK13415 63 VSAFDFVKLIGATLFVIFLIYALVKWL 89 (219)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444555666666777777664
No 132
>PF06692 MNSV_P7B: Melon necrotic spot virus P7B protein; InterPro: IPR009575 This family consists of several Melon necrotic spot virus (MNSV) P7B proteins. The function of this family is unknown.
Probab=56.80 E-value=13 Score=23.41 Aligned_cols=17 Identities=24% Similarity=0.266 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHH
Q 026774 213 LLAVIGIVVLVVVIYML 229 (233)
Q Consensus 213 ~~l~i~lv~l~v~i~~~ 229 (233)
.+|++++-++|++|+++
T Consensus 16 ~lLiliis~~f~lI~~l 32 (61)
T PF06692_consen 16 PLLILIISFVFFLITSL 32 (61)
T ss_pred HHHHHHHHHHHHHHhhh
Confidence 44555566666677665
No 133
>PF14002 YniB: YniB-like protein
Probab=56.31 E-value=80 Score=24.71 Aligned_cols=26 Identities=19% Similarity=0.351 Sum_probs=20.4
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhC
Q 026774 208 TCMCMLLAVIGIVVLVVVIYMLIKYL 233 (233)
Q Consensus 208 ~~~~i~~l~i~lv~l~v~i~~~~k~~ 233 (233)
.+.=++.|-|.=++++++.|++.|+|
T Consensus 139 if~Q~f~LYi~Piiv~vigyf~lkll 164 (166)
T PF14002_consen 139 IFLQFFPLYILPIIVAVIGYFILKLL 164 (166)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33346777888889999999999975
No 134
>cd00179 SynN Syntaxin N-terminus domain; syntaxins are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane; they are a family of receptors for intracellular transport vesicles; each target membrane may be identified by a specific member of the syntaxin family; syntaxins contain a moderately well conserved amino-terminal domain, called Habc, whose structure is an antiparallel three-helix bundle; a linker of about 30 amino acids connects this to the carboxy-terminal region, designated H3 (t_SNARE), of the syntaxin cytoplasmic domain; the highly conserved H3 region forms a single, long alpha-helix when it is part of the core SNARE complex and anchors the protein on the cytoplasmic surface of cellular membranes; H3 is not included in defining this domain
Probab=56.30 E-value=84 Score=23.60 Aligned_cols=61 Identities=16% Similarity=0.237 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHh
Q 026774 142 EQDEGLEKLEETVVSTKHIALAVNEELDLHTRLIDDLDQHVDVTDSRLRRVQKNLAILNKR 202 (233)
Q Consensus 142 ~qd~~l~~l~~~v~~l~~~~~~i~~ev~~Q~~~ld~i~~~vd~~~~~l~~~~~~l~~~~~~ 202 (233)
.....|..|...|..|..+-..++...+....+=+.|+.-++.+..........|+.+-..
T Consensus 10 ~I~~~i~~i~~~v~~l~~l~~~~~t~~~~~~~~~~~l~~~~~~~~~~~~~ik~~lk~l~~~ 70 (151)
T cd00179 10 EIRGNIDKISEDVEELQKLHSQLLTAPDADPELKQELESLVQEIKKLAKEIKGKLKELEES 70 (151)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3345666666666666666666766665334566677777777777777777777765543
No 135
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=55.68 E-value=2.4e+02 Score=28.75 Aligned_cols=56 Identities=2% Similarity=-0.086 Sum_probs=26.6
Q ss_pred cHHHHHHHHHHHHHHHHHhhHhhhCCCCCCchhHHHHHHHHHHHHHHHHhHHHHHHHH
Q 026774 7 SWIKEYNEAIKLADDINGMISERSSMPASGPESQRHASAIRRKITILGTRLDSLQSLL 64 (233)
Q Consensus 7 ~~~~~~~ev~~~l~~i~~~i~~r~~~~~~~~e~~~~~~~Ir~~l~~l~~~l~~L~~~l 64 (233)
.|.+++.++.-.++.+.....+.++. .......-..++...+..++..|.+.+..+
T Consensus 709 kf~~l~~ql~l~~~~l~l~~~r~~~~--e~~~~~~~~~~~~e~v~e~~~~Ike~~~~~ 764 (1174)
T KOG0933|consen 709 KFRDLKQQLELKLHELALLEKRLEQN--EFHKLLDDLKELLEEVEESEQQIKEKERAL 764 (1174)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcC--hHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35666666666666555544443331 111122233444445555555555555444
No 136
>PF09577 Spore_YpjB: Sporulation protein YpjB (SpoYpjB); InterPro: IPR014231 Proteins in thie entry, typified by YpjB, are restricted to a subset of the endospore-forming bacteria which includes Bacillus species, but not species. In Bacillus subtilis, ypjB was found to be part of the sigma-E regulon []. Sigma-E is a sporulation sigma factor that regulates expression in the mother cell compartment. Null mutants of ypjB show a sporulation defect, but this gene is not, however, a part of the endospore formation minimal gene set.
Probab=55.45 E-value=63 Score=26.91 Aligned_cols=45 Identities=4% Similarity=0.203 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHH
Q 026774 145 EGLEKLEETVVSTKHIALAVNEELDLHTRLIDDLDQHVDVTDSRLR 190 (233)
Q Consensus 145 ~~l~~l~~~v~~l~~~~~~i~~ev~~Q~~~ld~i~~~vd~~~~~l~ 190 (233)
+.++.+..-|.-+.+.+...... ....+-|+.++.++...-.+.+
T Consensus 147 ~~v~~v~s~i~yl~~~~~~~~~~-~~~~~~l~~le~~l~~lF~~~k 191 (232)
T PF09577_consen 147 EQVQRVDSHISYLERLRFQQLDQ-KEVQEALEQLEEDLQKLFDGVK 191 (232)
T ss_pred HHHHHHHHHHHHHHHhhhcccCh-HHHHHHHHHHHHHHHHHhCccc
Confidence 34444444444444432222221 2233335555555554444433
No 137
>COG4575 ElaB Uncharacterized conserved protein [Function unknown]
Probab=55.44 E-value=77 Score=22.89 Aligned_cols=50 Identities=18% Similarity=0.233 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHhhHhhhCCCCCCchhHHHHHHHHHHHHHHHHhHHHH
Q 026774 9 IKEYNEAIKLADDINGMISERSSMPASGPESQRHASAIRRKITILGTRLDSL 60 (233)
Q Consensus 9 ~~~~~ev~~~l~~i~~~i~~r~~~~~~~~e~~~~~~~Ir~~l~~l~~~l~~L 60 (233)
.+.++++..++..+.+.+..+-.. .+.+..++.+.+...++..+..+.+.
T Consensus 11 ~~l~~el~~L~d~lEevL~ssg~~--a~~e~~~lR~r~~~~Lk~~r~rl~~~ 60 (104)
T COG4575 11 DQLLAELQELLDTLEEVLKSSGSL--AGDEAEELRSKAESALKEARDRLGDT 60 (104)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccc--hhhHHHHHHHHHHHHHHHHHHHHHhh
Confidence 455555555555555555443331 22334444444444444444444444
No 138
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=55.44 E-value=2.7e+02 Score=29.13 Aligned_cols=20 Identities=10% Similarity=0.308 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHhc
Q 026774 81 RKDMLANLRSKVNQMASTLN 100 (233)
Q Consensus 81 R~~~~~~l~~~l~~l~~~~~ 100 (233)
-.+.+..|...+.+|+....
T Consensus 1617 a~q~~~eL~~~~e~lk~~~~ 1636 (1758)
T KOG0994|consen 1617 ATQQLGELETRMEELKHKAA 1636 (1758)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34455666666666665543
No 139
>PRK03814 oxaloacetate decarboxylase subunit gamma; Provisional
Probab=55.26 E-value=22 Score=24.67 Aligned_cols=21 Identities=19% Similarity=0.323 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHhhC
Q 026774 213 LLAVIGIVVLVVVIYMLIKYL 233 (233)
Q Consensus 213 ~~l~i~lv~l~v~i~~~~k~~ 233 (233)
.+.+++|++|++++-++.|++
T Consensus 20 ~~VF~fL~lLi~~~~l~~~~~ 40 (85)
T PRK03814 20 GVVFIFLTLLVYLVQLMSKLI 40 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHc
Confidence 334455666666666777764
No 140
>TIGR01195 oadG_fam sodium pump decarboxylases, gamma subunit. Most sequences scoring between the noise and trusted cutoffs are eukaryotic sodium channel proteins.
Probab=54.59 E-value=21 Score=24.56 Aligned_cols=19 Identities=11% Similarity=0.151 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHhh
Q 026774 214 LAVIGIVVLVVVIYMLIKY 232 (233)
Q Consensus 214 ~l~i~lv~l~v~i~~~~k~ 232 (233)
+.+++|++|++++.++.|+
T Consensus 17 ~VF~fL~lLi~~i~~~~~~ 35 (82)
T TIGR01195 17 IVFLFLSLLIYAVRGMGKV 35 (82)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344556666666666665
No 141
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=54.13 E-value=1.7e+02 Score=26.60 Aligned_cols=53 Identities=15% Similarity=0.282 Sum_probs=25.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHH
Q 026774 144 DEGLEKLEETVVSTKHIALAVNEELDLHTRLIDDLDQHVDVTDSRLRRVQKNL 196 (233)
Q Consensus 144 d~~l~~l~~~v~~l~~~~~~i~~ev~~Q~~~ld~i~~~vd~~~~~l~~~~~~l 196 (233)
..+|..++..+.........+..++.++..=+..++..+-.+...++...+++
T Consensus 44 q~ei~~~~~~i~~~~~~~~kL~~~lk~~e~~i~~~~~ql~~s~~~l~~~~~~I 96 (420)
T COG4942 44 QKEIAALEKKIREQQDQRAKLEKQLKSLETEIASLEAQLIETADDLKKLRKQI 96 (420)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhH
Confidence 34444444555555555555555555555555555554444444444443333
No 142
>PF08650 DASH_Dad4: DASH complex subunit Dad4; InterPro: IPR013959 The DASH complex is a ~10 subunit microtubule-binding complex that is transferred to the kinetochore prior to mitosis []. In Saccharomyces cerevisiae (Baker's yeast) DASH forms both rings and spiral structures on microtubules in vitro [, ].
Probab=54.11 E-value=54 Score=22.01 Aligned_cols=36 Identities=14% Similarity=0.312 Sum_probs=26.8
Q ss_pred HHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHhcCC
Q 026774 170 LHTRLIDDLDQHVDVTDSRLRRVQKNLAILNKRTKG 205 (233)
Q Consensus 170 ~Q~~~ld~i~~~vd~~~~~l~~~~~~l~~~~~~~~~ 205 (233)
.|..+|.+|=.+|++-...+..-++.+..+..+...
T Consensus 8 ~Q~~LLsRIi~NvekLNEsv~~lN~~l~eIn~~N~~ 43 (72)
T PF08650_consen 8 QQSNLLSRIIGNVEKLNESVAELNQELEEINRANKN 43 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccc
Confidence 477777777777777777777777777777776554
No 143
>COG4068 Uncharacterized protein containing a Zn-ribbon [Function unknown]
Probab=53.64 E-value=15 Score=23.54 Aligned_cols=14 Identities=7% Similarity=0.624 Sum_probs=6.4
Q ss_pred HHHHHHHHHHHHHH
Q 026774 211 CMLLAVIGIVVLVV 224 (233)
Q Consensus 211 ~i~~l~i~lv~l~v 224 (233)
++++|+.+++++.+
T Consensus 45 ~~~~li~aLi~v~v 58 (64)
T COG4068 45 ILMFLILALILVMV 58 (64)
T ss_pred HHHHHHHHHHHHHH
Confidence 44444444444443
No 144
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=53.28 E-value=57 Score=20.77 Aligned_cols=51 Identities=12% Similarity=0.227 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHhc
Q 026774 146 GLEKLEETVVSTKHIALAVNEELDLHTRLIDDLDQHVDVTDSRLRRVQKNLAILNKRT 203 (233)
Q Consensus 146 ~l~~l~~~v~~l~~~~~~i~~ev~~Q~~~ld~i~~~vd~~~~~l~~~~~~l~~~~~~~ 203 (233)
.++.|+.-|+.|+.--.++..+| +.+-.++..+...-.+++.||.-...++
T Consensus 4 kid~Ls~dVq~L~~kvdqLs~dv-------~~lr~~v~~ak~EAaRAN~RlDN~a~sY 54 (56)
T PF04728_consen 4 KIDQLSSDVQTLNSKVDQLSSDV-------NALRADVQAAKEEAARANQRLDNIAQSY 54 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHhhHhhc
Confidence 45556655555555544444443 2333445555666666666666555443
No 145
>TIGR03745 conj_TIGR03745 integrating conjugative element membrane protein, PFL_4702 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in a region flanked by markers of conjugative transfer and/or transposition.
Probab=53.28 E-value=33 Score=24.71 Aligned_cols=47 Identities=23% Similarity=0.325 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCchhHHH-HHHHHHHHHHHHHHHHHHh
Q 026774 185 TDSRLRRVQKNLAILNKRTKGGCTCMCM-LLAVIGIVVLVVVIYMLIK 231 (233)
Q Consensus 185 ~~~~l~~~~~~l~~~~~~~~~~~~~~~i-~~l~i~lv~l~v~i~~~~k 231 (233)
+..-+..+..-+.++.+-...|..|-=. .+.++.++++.++||++.|
T Consensus 52 a~aFi~Va~~a~~ty~Ei~~Gk~~W~~fg~~v~VGviLLv~vIwLltk 99 (104)
T TIGR03745 52 AIAFIGVAYHALGTYHEIRTGKATWGDFGATVVVGAILLVVIIWLLTK 99 (104)
T ss_pred HHHHHHHHHHHHHHHHHHHcchhhHHhCcchhhhHhHHHHHHHHHHHH
Confidence 3444555666667777665554444422 4455677777888888877
No 146
>PF10151 DUF2359: Uncharacterised conserved protein (DUF2359); InterPro: IPR019308 This is a 450 amino acid region of a family of proteins conserved from insects to humans. The function is not known.
Probab=53.06 E-value=1.9e+02 Score=26.78 Aligned_cols=40 Identities=15% Similarity=0.384 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHHHHHhcCC-CchhHHHHHHHHHHHHHHHHHH
Q 026774 187 SRLRRVQKNLAILNKRTKG-GCTCMCMLLAVIGIVVLVVVIY 227 (233)
Q Consensus 187 ~~l~~~~~~l~~~~~~~~~-~~~~~~i~~l~i~lv~l~v~i~ 227 (233)
..++.+.+--+.+.++.++ +|.|+.. ++++++++.+++.|
T Consensus 243 ~~lk~~dk~Ck~il~K~~~~~c~w~~l-~llllvliaG~l~y 283 (469)
T PF10151_consen 243 ESLKECDKACKVILGKMSGSSCPWTRL-LLLLLVLIAGFLAY 283 (469)
T ss_pred HHHHHHHHHHHHHHHhhcCCCCchHHH-HHHHHHHHHHHHHH
Confidence 3445555556666666555 4554443 33333333344443
No 147
>CHL00031 psbT photosystem II protein T
Probab=51.91 E-value=14 Score=20.69 Aligned_cols=17 Identities=18% Similarity=0.415 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHH
Q 026774 212 MLLAVIGIVVLVVVIYM 228 (233)
Q Consensus 212 i~~l~i~lv~l~v~i~~ 228 (233)
+++|+..+.++++.|++
T Consensus 7 tfll~~tlgilFFAI~F 23 (33)
T CHL00031 7 TFLLVSTLGIIFFAIFF 23 (33)
T ss_pred HHHHHHHHHHHHHhhee
Confidence 34555556666666553
No 148
>PF01601 Corona_S2: Coronavirus S2 glycoprotein; InterPro: IPR002552 The type I glycoprotein S of Coronavirus, trimers of which constitute the typical viral spikes, is assembled into virions through noncovalent interactions with the M protein. The spike glycoprotein is translated as a large polypeptide that is subsequently cleaved to S1 IPR002551 from INTERPRO and S2 []. Both chimeric S proteins appeared to cause cell fusion when expressed individually, suggesting that they were biologically fully active []. The spike is a type I membrane glycoprotein that possesses a conserved transmembrane anchor and an unusual cysteine-rich (cys) domain that bridges the putative junction of the anchor and the cytoplasmic tail [].; GO: 0006944 cellular membrane fusion, 0046813 virion attachment, binding of host cell surface receptor, 0016021 integral to membrane, 0019031 viral envelope; PDB: 2BEQ_B 2FXP_A 1ZVB_A 1WNC_D 1ZV8_H 1ZV7_B 1WYY_B 1ZVA_A 2BEZ_F 1WDG_A ....
Probab=51.58 E-value=6.8 Score=36.87 Aligned_cols=17 Identities=35% Similarity=0.464 Sum_probs=8.0
Q ss_pred HHHHHHHHHHhHHHHHH
Q 026774 46 IRRKITILGTRLDSLQS 62 (233)
Q Consensus 46 Ir~~l~~l~~~l~~L~~ 62 (233)
|..+|..+-..|+.|+-
T Consensus 303 ISssI~dIy~RLd~leA 319 (610)
T PF01601_consen 303 ISSSIQDIYNRLDQLEA 319 (610)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhh
Confidence 33344555555555543
No 149
>PF12911 OppC_N: N-terminal TM domain of oligopeptide transport permease C
Probab=51.54 E-value=23 Score=21.98 Aligned_cols=8 Identities=25% Similarity=0.605 Sum_probs=3.0
Q ss_pred HHHHHHHH
Q 026774 219 IVVLVVVI 226 (233)
Q Consensus 219 lv~l~v~i 226 (233)
++++.++.
T Consensus 28 ~vl~ai~~ 35 (56)
T PF12911_consen 28 LVLLAIFA 35 (56)
T ss_pred HHHHHHHH
Confidence 33333333
No 150
>PRK04654 sec-independent translocase; Provisional
Probab=51.12 E-value=1.4e+02 Score=24.53 Aligned_cols=24 Identities=17% Similarity=-0.047 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 026774 147 LEKLEETVVSTKHIALAVNEELDL 170 (233)
Q Consensus 147 l~~l~~~v~~l~~~~~~i~~ev~~ 170 (233)
...++..+++++..+.++.+|+.+
T Consensus 29 aRtlGk~irk~R~~~~~vk~El~~ 52 (214)
T PRK04654 29 ARFAGLWVRRARMQWDSVKQELER 52 (214)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555555555533
No 151
>PHA02675 ORF104 fusion protein; Provisional
Probab=51.08 E-value=80 Score=21.80 Aligned_cols=48 Identities=17% Similarity=0.255 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHH
Q 026774 150 LEETVVSTKHIALAVNEELDLHTRLIDDLDQHVDVTDSRLRRVQKNLA 197 (233)
Q Consensus 150 l~~~v~~l~~~~~~i~~ev~~Q~~~ld~i~~~vd~~~~~l~~~~~~l~ 197 (233)
|..-+.+|-..+..+-+.-..-++.|++++.+.+.....|-.-++++.
T Consensus 35 le~RL~~L~k~~~~i~~cC~~~~~~L~RLE~H~ETLRk~Ml~L~KKID 82 (90)
T PHA02675 35 VEERLVSLLDSYKTITDCCRETGARLDRLERHLETLREALLKLNTKID 82 (90)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 334444555677777777778888899999988887777766666554
No 152
>COG4537 ComGC Competence protein ComGC [Intracellular trafficking and secretion]
Probab=50.96 E-value=24 Score=25.30 Aligned_cols=36 Identities=19% Similarity=0.227 Sum_probs=14.9
Q ss_pred HHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHHH
Q 026774 195 NLAILNKRTKGGCTCMCMLLAVIGIVVLVVVIYMLI 230 (233)
Q Consensus 195 ~l~~~~~~~~~~~~~~~i~~l~i~lv~l~v~i~~~~ 230 (233)
++.+..+..+.....=.+++|+|+-|++++++.=++
T Consensus 3 ~~~k~~~~~kgFTLvEMLiVLlIISiLlLl~iPNlt 38 (107)
T COG4537 3 KMKKFLKHKKGFTLVEMLIVLLIISILLLLFIPNLT 38 (107)
T ss_pred hHHHHHHhcccccHHHHHHHHHHHHHHHHHHccchh
Confidence 455666655442221123333334444444444333
No 153
>PF10857 DUF2701: Protein of unknown function (DUF2701); InterPro: IPR022586 This entry represents viral proteins with unknown function. The entry contains ORF C51 from Swinepox virus (strain Kasza).
Probab=50.74 E-value=5.3 Score=25.85 Aligned_cols=16 Identities=31% Similarity=0.669 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHhh
Q 026774 217 IGIVVLVVVIYMLIKY 232 (233)
Q Consensus 217 i~lv~l~v~i~~~~k~ 232 (233)
++++++++++.+++||
T Consensus 6 vvi~i~~~lllyLvkw 21 (63)
T PF10857_consen 6 VVIVILAYLLLYLVKW 21 (63)
T ss_pred eHHHHHHHHHHHHHHH
Confidence 3445555566666665
No 154
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=50.47 E-value=3.1e+02 Score=28.48 Aligned_cols=18 Identities=11% Similarity=0.468 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 026774 78 MNRRKDMLANLRSKVNQM 95 (233)
Q Consensus 78 ~~~R~~~~~~l~~~l~~l 95 (233)
+..+++.+..++.+++++
T Consensus 860 l~~~~~~ie~l~kE~e~~ 877 (1293)
T KOG0996|consen 860 LKELEEQIEELKKEVEEL 877 (1293)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334444444444444444
No 155
>PRK05529 cell division protein FtsQ; Provisional
Probab=50.44 E-value=13 Score=31.41 Aligned_cols=35 Identities=9% Similarity=0.155 Sum_probs=16.5
Q ss_pred HHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHHH
Q 026774 196 LAILNKRTKGGCTCMCMLLAVIGIVVLVVVIYMLI 230 (233)
Q Consensus 196 l~~~~~~~~~~~~~~~i~~l~i~lv~l~v~i~~~~ 230 (233)
+.++.+..+.++.+|.+++.+++++++++++|+.+
T Consensus 24 ~~~~~~~~~~r~~~~~~~~~~~~~l~~l~~~~~~S 58 (255)
T PRK05529 24 VRRFTTRIRRRFILLACAVGAVLTLLLFVMLSAYS 58 (255)
T ss_pred hhchhhhccchhhhHHHHHHHHHHHHHHHHHheeC
Confidence 55666665554444433333333333444455544
No 156
>PF06024 DUF912: Nucleopolyhedrovirus protein of unknown function (DUF912); InterPro: IPR009261 This entry is represented by Autographa californica nuclear polyhedrosis virus (AcMNPV), Orf78; it is a family of uncharacterised viral proteins.
Probab=50.19 E-value=12 Score=26.79 Aligned_cols=24 Identities=17% Similarity=0.501 Sum_probs=15.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHh
Q 026774 208 TCMCMLLAVIGIVVLVVVIYMLIK 231 (233)
Q Consensus 208 ~~~~i~~l~i~lv~l~v~i~~~~k 231 (233)
.+-++++.+++++.++|++|.+.=
T Consensus 60 ~~~iili~lls~v~IlVily~IyY 83 (101)
T PF06024_consen 60 NGNIILISLLSFVCILVILYAIYY 83 (101)
T ss_pred cccchHHHHHHHHHHHHHHhhheE
Confidence 344667777777777777776653
No 157
>TIGR02956 TMAO_torS TMAO reductase sytem sensor TorS. This protein, TorS, is part of a regulatory system for the torCAD operon that encodes the pterin molybdenum cofactor-containing enzyme trimethylamine-N-oxide (TMAO) reductase (TorA), a cognate chaperone (TorD), and a penta-haem cytochrome (TorC). TorS works together with the inducer-binding protein TorT and the response regulator TorR. TorS contains histidine kinase ATPase (pfam02518), HAMP (pfam00672), phosphoacceptor (pfam00512), and phosphotransfer (pfam01627) domains and a response regulator receiver domain (pfam00072).
Probab=49.93 E-value=2.8e+02 Score=27.68 Aligned_cols=9 Identities=11% Similarity=0.161 Sum_probs=3.2
Q ss_pred HHHHHHHHH
Q 026774 187 SRLRRVQKN 195 (233)
Q Consensus 187 ~~l~~~~~~ 195 (233)
.....+...
T Consensus 313 ~~~~~~~~~ 321 (968)
T TIGR02956 313 QRTEAAVSD 321 (968)
T ss_pred HHHHHHHHH
Confidence 333333333
No 158
>PF11239 DUF3040: Protein of unknown function (DUF3040); InterPro: IPR021401 Some members in this family of proteins with unknown function are annotated as membrane proteins however this cannot be confirmed.
Probab=49.75 E-value=54 Score=22.30 Aligned_cols=23 Identities=13% Similarity=0.452 Sum_probs=18.2
Q ss_pred HHHHHHhHhHHHHHHHHHHHHHH
Q 026774 173 RLIDDLDQHVDVTDSRLRRVQKN 195 (233)
Q Consensus 173 ~~ld~i~~~vd~~~~~l~~~~~~ 195 (233)
+.|++||.+.-..+-++....+.
T Consensus 9 r~L~eiEr~L~~~DP~fa~~l~~ 31 (82)
T PF11239_consen 9 RRLEEIERQLRADDPRFAARLRS 31 (82)
T ss_pred HHHHHHHHHHHhcCcHHHHHhcc
Confidence 48999999998888887766555
No 159
>PHA02844 putative transmembrane protein; Provisional
Probab=49.55 E-value=9 Score=25.74 Aligned_cols=24 Identities=8% Similarity=0.022 Sum_probs=12.0
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHH
Q 026774 206 GCTCMCMLLAVIGIVVLVVVIYML 229 (233)
Q Consensus 206 ~~~~~~i~~l~i~lv~l~v~i~~~ 229 (233)
++.++++++.+++++++.++...+
T Consensus 48 ~~~~ii~i~~v~~~~~~~flYLK~ 71 (75)
T PHA02844 48 TKIWILTIIFVVFATFLTFLYLKA 71 (75)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhe
Confidence 455555455455555555554443
No 160
>PHA03395 p10 fibrous body protein; Provisional
Probab=49.34 E-value=88 Score=21.80 Aligned_cols=52 Identities=21% Similarity=0.317 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHhHhHHHHHHH
Q 026774 137 RQIMREQDEGLEKLEETVVSTKHIAL---AVNEELDLHTRLIDDLDQHVDVTDSR 188 (233)
Q Consensus 137 ~~~~~~qd~~l~~l~~~v~~l~~~~~---~i~~ev~~Q~~~ld~i~~~vd~~~~~ 188 (233)
+.-++.-|..++.|...|..++.-.- .+.+-++.|...|+.+...++.-++-
T Consensus 10 r~dIkavd~KVdalQ~~V~~l~~nlpdv~~l~~kLdaq~~~Ltti~tkv~~I~di 64 (87)
T PHA03395 10 RQDIKAVSDKVDALQAAVDDVRANLPDVTEINEKLDAQSASLDTISSAVDNITDI 64 (87)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHhcCCcHHHHHHHHHhHHHHHHHHHHHHHHHHHc
Confidence 45577888899999999999987664 56777888888888888888765543
No 161
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=49.06 E-value=2.4e+02 Score=26.71 Aligned_cols=181 Identities=12% Similarity=0.157 Sum_probs=0.0
Q ss_pred CCcHHHHHHHHHHHHHHHHHhhHhhhCCCCCCchhHHHHHHHHHHHHHHHHhHHHHHHHHhcCCCCCCCCHHHHHHHHHH
Q 026774 5 SDSWIKEYNEAIKLADDINGMISERSSMPASGPESQRHASAIRRKITILGTRLDSLQSLLSKLPGKQPISEKEMNRRKDM 84 (233)
Q Consensus 5 ~D~~~~~~~ev~~~l~~i~~~i~~r~~~~~~~~e~~~~~~~Ir~~l~~l~~~l~~L~~~l~~~~~~~~~~~~E~~~R~~~ 84 (233)
+..|....+.+...+..+...+..+..+..+|. -.+.+..+..++..+..|+..++..|. --.++..
T Consensus 160 ~~~~G~a~~~le~~l~~~e~~f~~f~~l~~~Gd-----~~~A~e~l~~l~~~~~~l~~~~~~iP~----l~~~~~~---- 226 (569)
T PRK04778 160 RFSFGPALDELEKQLENLEEEFSQFVELTESGD-----YVEAREILDQLEEELAALEQIMEEIPE----LLKELQT---- 226 (569)
T ss_pred CccccchHHHHHHHHHHHHHHHHHHHHHhcCCC-----HHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHH----
Q ss_pred HHHHHHHHHHHHHHhccccccCCCCcCCCCCCChhhhhcccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026774 85 LANLRSKVNQMASTLNMSNFANRDSLLGPEIKSADVMNRATGLDNQGLVGFQRQIMREQDEGLEKLEETVVSTKHIALAV 164 (233)
Q Consensus 85 ~~~l~~~l~~l~~~~~~~~~~~r~~l~~~~~~~~~e~~~~~~~~~~~~~~~q~~~~~~qd~~l~~l~~~v~~l~~~~~~i 164 (233)
.+=.++++|+..++... .....-+.-....+.......=....-....--++.....++.|...|..|-.....=
T Consensus 227 --~~P~ql~el~~gy~~m~---~~gy~~~~~~i~~~i~~l~~~i~~~~~~l~~l~l~~~~~~~~~i~~~Id~Lyd~lekE 301 (569)
T PRK04778 227 --ELPDQLQELKAGYRELV---EEGYHLDHLDIEKEIQDLKEQIDENLALLEELDLDEAEEKNEEIQERIDQLYDILERE 301 (569)
T ss_pred --HhhHHHHHHHHHHHHHH---HcCCCCCCCChHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHhc
Q 026774 165 NEELDLHTRLIDDLDQHVDVTDSRLRRVQKNLAILNKRT 203 (233)
Q Consensus 165 ~~ev~~Q~~~ld~i~~~vd~~~~~l~~~~~~l~~~~~~~ 203 (233)
..--..=..-...+...++++..........+.++-.+.
T Consensus 302 ~~A~~~vek~~~~l~~~l~~~~e~~~~l~~Ei~~l~~sY 340 (569)
T PRK04778 302 VKARKYVEKNSDTLPDFLEHAKEQNKELKEEIDRVKQSY 340 (569)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHcc
No 162
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=48.99 E-value=1.1e+02 Score=22.89 Aligned_cols=60 Identities=17% Similarity=0.289 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHh
Q 026774 143 QDEGLEKLEETVVSTKHIA----LAVNEELDLHTRLIDDLDQHVDVTDSRLRRVQKNLAILNKR 202 (233)
Q Consensus 143 qd~~l~~l~~~v~~l~~~~----~~i~~ev~~Q~~~ld~i~~~vd~~~~~l~~~~~~l~~~~~~ 202 (233)
--.+|+++++++...|.-. ..+..-+++|.++...+.++|..+...+......+..+-..
T Consensus 48 v~kql~~vs~~l~~tKkhLsqRId~vd~klDe~~ei~~~i~~eV~~v~~dv~~i~~dv~~v~~~ 111 (126)
T PF07889_consen 48 VSKQLEQVSESLSSTKKHLSQRIDRVDDKLDEQKEISKQIKDEVTEVREDVSQIGDDVDSVQQM 111 (126)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 3456666666666554332 34556677888888888888888887777777776665544
No 163
>COG1622 CyoA Heme/copper-type cytochrome/quinol oxidases, subunit 2 [Energy production and conversion]
Probab=48.22 E-value=24 Score=29.69 Aligned_cols=22 Identities=36% Similarity=0.708 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhh
Q 026774 211 CMLLAVIGIVVLVVVIYMLIKY 232 (233)
Q Consensus 211 ~i~~l~i~lv~l~v~i~~~~k~ 232 (233)
.+++++|++++++.++|++.||
T Consensus 38 ~~~~~~I~~~V~~~~~~~~~k~ 59 (247)
T COG1622 38 TLLMLVIVLPVIVLLVYFAWKY 59 (247)
T ss_pred HHHHHHHHHHHHHHHHHHHhhh
Confidence 3444447777778888888886
No 164
>PF07219 HemY_N: HemY protein N-terminus; InterPro: IPR010817 This entry represents the N terminus (approximately 150 residues) of bacterial HemY porphyrin biosynthesis proteins. These are membrane protein involved in a late step of protoheme IX synthesis [].
Probab=48.04 E-value=25 Score=25.32 Aligned_cols=20 Identities=35% Similarity=0.751 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHhh
Q 026774 213 LLAVIGIVVLVVVIYMLIKY 232 (233)
Q Consensus 213 ~~l~i~lv~l~v~i~~~~k~ 232 (233)
.+++++++++++++|++.++
T Consensus 17 ~~~~~~l~~~~~~l~ll~~l 36 (108)
T PF07219_consen 17 WVALILLLLLFVVLYLLLRL 36 (108)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34445566666677766654
No 165
>COG3630 OadG Na+-transporting methylmalonyl-CoA/oxaloacetate decarboxylase, gamma subunit [Energy production and conversion]
Probab=47.94 E-value=35 Score=23.58 Aligned_cols=20 Identities=5% Similarity=0.009 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHhh
Q 026774 213 LLAVIGIVVLVVVIYMLIKY 232 (233)
Q Consensus 213 ~~l~i~lv~l~v~i~~~~k~ 232 (233)
.+.++++.+|++++|.+.++
T Consensus 19 g~VflfL~iLi~~~~~m~~~ 38 (84)
T COG3630 19 GFVFLFLSILIYAMRGMGAV 38 (84)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 44455677778888888775
No 166
>PF04021 Class_IIIsignal: Class III signal peptide; InterPro: IPR007166 This entry represents an amino terminal motif QXSXEXXXL thought to be part of a class III signal sequence for a family of archaeal proteins. The Q residue is the +1 residue of the signal peptidase cleavage site []. Two proteins containing this motif are cleaved by a type IV pilin-like signal peptidase.
Probab=47.80 E-value=21 Score=19.22 Aligned_cols=12 Identities=33% Similarity=0.700 Sum_probs=5.3
Q ss_pred HHHHHHHHHHHH
Q 026774 217 IGIVVLVVVIYM 228 (233)
Q Consensus 217 i~lv~l~v~i~~ 228 (233)
+++++.++++|+
T Consensus 15 ~vlv~~~i~~~~ 26 (28)
T PF04021_consen 15 AVLVIAIIVIYY 26 (28)
T ss_pred HHHHHHHHHHhc
Confidence 344444444443
No 167
>PF09771 Tmemb_18A: Transmembrane protein 188; InterPro: IPR019168 The function of this family of transmembrane proteins has not, as yet, been determined.
Probab=47.73 E-value=70 Score=23.95 Aligned_cols=36 Identities=14% Similarity=0.230 Sum_probs=24.6
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHH
Q 026774 185 TDSRLRRVQKNLAILNKRTKGGCTCMCMLLAVIGIV 220 (233)
Q Consensus 185 ~~~~l~~~~~~l~~~~~~~~~~~~~~~i~~l~i~lv 220 (233)
+.+.|+.=-+|+.+++.+.+..+.-|-++++++.++
T Consensus 5 ~ceDLkaFErRLtEvI~~l~Pst~RWRiiL~v~svc 40 (125)
T PF09771_consen 5 ACEDLKAFERRLTEVINSLQPSTTRWRIILVVVSVC 40 (125)
T ss_pred hHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHH
Confidence 467788888999999998887655565444433333
No 168
>PHA03240 envelope glycoprotein M; Provisional
Probab=47.35 E-value=18 Score=29.57 Aligned_cols=8 Identities=0% Similarity=0.363 Sum_probs=4.5
Q ss_pred chhHHHHH
Q 026774 207 CTCMCMLL 214 (233)
Q Consensus 207 ~~~~~i~~ 214 (233)
|.+..|++
T Consensus 215 WIiilIIi 222 (258)
T PHA03240 215 WIFIAIII 222 (258)
T ss_pred HHHHHHHH
Confidence 66665544
No 169
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=47.03 E-value=1e+02 Score=25.56 Aligned_cols=56 Identities=11% Similarity=0.227 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q 026774 43 ASAIRRKITILGTRLDSLQSLLSKLPGKQPISEKEMNRRKDMLANLRSKVNQMAST 98 (233)
Q Consensus 43 ~~~Ir~~l~~l~~~l~~L~~~l~~~~~~~~~~~~E~~~R~~~~~~l~~~l~~l~~~ 98 (233)
..++...+..++..++.+++-++........-...++++-.-+..|+.+++++...
T Consensus 151 keeL~~eleele~e~ee~~erlk~le~E~s~LeE~~~~l~~ev~~L~~r~~ELe~~ 206 (290)
T COG4026 151 KEELLKELEELEAEYEEVQERLKRLEVENSRLEEMLKKLPGEVYDLKKRWDELEPG 206 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHhccc
Confidence 34444455555555555555444332111012333344444555666666555443
No 170
>PF00846 Hanta_nucleocap: Hantavirus nucleocapsid protein; InterPro: IPR002214 Hantaviruses are ssRNA negative-strand viruses. The nucleocapsid protein is an internal protein of the virus particle [, ].; GO: 0019013 viral nucleocapsid; PDB: 2IC9_A 2IC6_A 2K48_A 4FI5_A.
Probab=46.60 E-value=81 Score=28.30 Aligned_cols=54 Identities=15% Similarity=0.375 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHhHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 026774 45 AIRRKITILGTRLDSLQSLLSKLPGKQPISEKEMNRRKDMLANLRSKVNQMASTLN 100 (233)
Q Consensus 45 ~Ir~~l~~l~~~l~~L~~~l~~~~~~~~~~~~E~~~R~~~~~~l~~~l~~l~~~~~ 100 (233)
.....|...++.|.+.++..++.|.. +...-+..|+..+..+..++.+++..+.
T Consensus 13 ~~E~qL~~a~qkl~da~~~~e~dpD~--~nk~~~~~R~~~v~~~~~Ki~elkr~lA 66 (428)
T PF00846_consen 13 QHEQQLVIARQKLKDAEKQYEKDPDD--VNKSTLQQRQSVVSALQDKIAELKRQLA 66 (428)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH---H--HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCChH--HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33456677777788888888888764 4567788999999999999999888663
No 171
>PF09680 Tiny_TM_bacill: Protein of unknown function (Tiny_TM_bacill); InterPro: IPR010070 This entry represents a family of hypothetical proteins, half of which are 40 residues or less in length. Members are found only in spore-forming species. A Gly-rich variable region is followed by a strongly conserved, highly hydrophobic region, predicted to form a transmembrane helix, ending with an invariant Gly. The consensus for this stretch is FALLVVFILLIIV.
Probab=46.56 E-value=24 Score=18.29 Aligned_cols=10 Identities=10% Similarity=0.454 Sum_probs=4.1
Q ss_pred HHHHHHHHHH
Q 026774 212 MLLAVIGIVV 221 (233)
Q Consensus 212 i~~l~i~lv~ 221 (233)
|++|+|.+++
T Consensus 9 ivVLFILLiI 18 (24)
T PF09680_consen 9 IVVLFILLII 18 (24)
T ss_pred HHHHHHHHHH
Confidence 3444444443
No 172
>PF06196 DUF997: Protein of unknown function (DUF997); InterPro: IPR010398 This is a family of predicted bacterial membrane protein with unknown function.
Probab=46.01 E-value=30 Score=23.72 Aligned_cols=17 Identities=12% Similarity=0.796 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHhhC
Q 026774 217 IGIVVLVVVIYMLIKYL 233 (233)
Q Consensus 217 i~lv~l~v~i~~~~k~~ 233 (233)
+..+++.++.|+++|++
T Consensus 52 ~~~il~~~l~~~~vk~~ 68 (80)
T PF06196_consen 52 GGPILFIILVWLMVKFF 68 (80)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34455555667777763
No 173
>PF14992 TMCO5: TMCO5 family
Probab=45.95 E-value=1.9e+02 Score=24.77 Aligned_cols=47 Identities=9% Similarity=0.200 Sum_probs=33.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHH
Q 026774 139 IMREQDEGLEKLEETVVSTKHIALAVNEELDLHTRLIDDLDQHVDVT 185 (233)
Q Consensus 139 ~~~~qd~~l~~l~~~v~~l~~~~~~i~~ev~~Q~~~ld~i~~~vd~~ 185 (233)
-...|..++..+.+.....+++..+-..++..=.+.|.+|++..+-+
T Consensus 124 ~~~~qE~ei~kve~d~~~v~~l~eDq~~~i~klkE~L~rmE~ekE~~ 170 (280)
T PF14992_consen 124 SCASQEKEIAKVEDDYQQVHQLCEDQANEIKKLKEKLRRMEEEKEML 170 (280)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34577788888877777778888777777777666677777755443
No 174
>PF04210 MtrG: Tetrahydromethanopterin S-methyltransferase, subunit G ; InterPro: IPR005866 This model describes the N5-methyltetrahydromethanopterin: coenzyme M methyltransferase subunit G in methanogenic archaea. This methyltranferase is a membrane-associated enzyme complex that uses methyl-transfer reaction to drive a sodium-ion pump. Archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase is involved in the transfer of a methyl group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of the methyl moiety in methyl-coenzyme M by another enzyme methyl-coenzyme M reductase.; GO: 0030269 tetrahydromethanopterin S-methyltransferase activity, 0015948 methanogenesis, 0016021 integral to membrane
Probab=45.60 E-value=89 Score=20.78 Aligned_cols=19 Identities=16% Similarity=0.543 Sum_probs=11.7
Q ss_pred HHHHHHHHhHhHHHHHHHH
Q 026774 171 HTRLIDDLDQHVDVTDSRL 189 (233)
Q Consensus 171 Q~~~ld~i~~~vd~~~~~l 189 (233)
=.+-||.||..++.+++.+
T Consensus 17 i~~rLd~iEeKvEf~~~Ei 35 (70)
T PF04210_consen 17 IMKRLDEIEEKVEFTNAEI 35 (70)
T ss_pred HHHHHHHHHHHHHhHHHHH
Confidence 3455667777766666554
No 175
>PF05957 DUF883: Bacterial protein of unknown function (DUF883); InterPro: IPR010279 This family consists of several bacterial proteins of unknown function that include the Escherichia coli genes for ElaB, YgaM and YqjD.
Probab=45.45 E-value=1e+02 Score=21.40 Aligned_cols=12 Identities=17% Similarity=0.041 Sum_probs=5.6
Q ss_pred HHHHHHHHHHHH
Q 026774 218 GIVVLVVVIYML 229 (233)
Q Consensus 218 ~lv~l~v~i~~~ 229 (233)
++.+-|++.+++
T Consensus 80 AagvG~llG~Ll 91 (94)
T PF05957_consen 80 AAGVGFLLGLLL 91 (94)
T ss_pred HHHHHHHHHHHH
Confidence 344444455544
No 176
>PRK10600 nitrate/nitrite sensor protein NarX; Provisional
Probab=45.18 E-value=1.6e+02 Score=27.49 Aligned_cols=10 Identities=40% Similarity=0.471 Sum_probs=4.0
Q ss_pred HHHHHHHHHh
Q 026774 222 LVVVIYMLIK 231 (233)
Q Consensus 222 l~v~i~~~~k 231 (233)
+++++|++.+
T Consensus 138 ~~~~~~~~~r 147 (569)
T PRK10600 138 LVFTIIWLRR 147 (569)
T ss_pred HHHHHHHHHH
Confidence 3334444433
No 177
>PF04906 Tweety: Tweety; InterPro: IPR006990 None of the members of the tweety (tty) family have been functionally characterised. However, they are considered to be transmembrane proteins with five potential membrane-spanning regions. A number of potential functions have been suggested on the basis of homology to the yeast FTR1 and FTH1 iron transporter proteins and the mammalian neurotensin receptors 1 and 2 in that they have a similar hydrophobicity profiles although there is no detectable sequence homology to the tweety-related proteins. It has been proposed that the tweety-related proteins could be involved in transport of iron or other divalent cations or alternatively that they may be membrane-bound receptors [].
Probab=44.98 E-value=2.4e+02 Score=25.54 Aligned_cols=10 Identities=10% Similarity=0.471 Sum_probs=3.8
Q ss_pred HHHHHHHHHH
Q 026774 216 VIGIVVLVVV 225 (233)
Q Consensus 216 ~i~lv~l~v~ 225 (233)
++.+++.++.
T Consensus 194 ~l~l~icl~~ 203 (406)
T PF04906_consen 194 ILDLVICLLG 203 (406)
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 178
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=44.97 E-value=47 Score=25.33 Aligned_cols=20 Identities=10% Similarity=0.353 Sum_probs=12.8
Q ss_pred HHHHHHHHHHHHHhhHhhhC
Q 026774 12 YNEAIKLADDINGMISERSS 31 (233)
Q Consensus 12 ~~ev~~~l~~i~~~i~~r~~ 31 (233)
++.+...++-|...+..++.
T Consensus 30 ~~~~~~vin~i~~Ll~~~~r 49 (151)
T PF11559_consen 30 EDNDVRVINCIYDLLQQRDR 49 (151)
T ss_pred cccHHHHHHHHHHHHHHHHH
Confidence 56666666666666765554
No 179
>PF05961 Chordopox_A13L: Chordopoxvirus A13L protein; InterPro: IPR009236 This family consists of A13L proteins from the Chordopoxviruses. A13L or p8 is one of the three most abundant membrane proteins of the intracellular mature Vaccinia virus [].
Probab=44.92 E-value=38 Score=22.36 Aligned_cols=12 Identities=17% Similarity=0.733 Sum_probs=4.7
Q ss_pred HHHHHHHHHHHH
Q 026774 216 VIGIVVLVVVIY 227 (233)
Q Consensus 216 ~i~lv~l~v~i~ 227 (233)
+|+++++++++|
T Consensus 9 ~ICVaii~lIlY 20 (68)
T PF05961_consen 9 IICVAIIGLILY 20 (68)
T ss_pred HHHHHHHHHHHH
Confidence 334444443333
No 180
>PF13121 DUF3976: Domain of unknown function (DUF3976)
Probab=44.50 E-value=6.2 Score=22.60 Aligned_cols=14 Identities=43% Similarity=1.134 Sum_probs=7.0
Q ss_pred HHHHHHHHHHHHHH
Q 026774 211 CMLLAVIGIVVLVV 224 (233)
Q Consensus 211 ~i~~l~i~lv~l~v 224 (233)
|+++.+|.+++++|
T Consensus 26 clvvmfigiivmiv 39 (41)
T PF13121_consen 26 CLVVMFIGIIVMIV 39 (41)
T ss_pred HHHHHHHHHHheEE
Confidence 55555555554443
No 181
>PF09548 Spore_III_AB: Stage III sporulation protein AB (spore_III_AB); InterPro: IPR014198 This entry represents the stage III sporulation protein AB, which is encoded in a spore formation operon: spoIIIAABCDEFGH that is under sigma G regulation []. A comparative genome analysis of all sequenced genomes of Firmicutes shows that the proteins are strictly conserved among the sub-set of endospore-forming species.
Probab=44.32 E-value=56 Score=25.59 Aligned_cols=26 Identities=19% Similarity=0.433 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc
Q 026774 75 EKEMNRRKDMLANLRSKVNQMASTLN 100 (233)
Q Consensus 75 ~~E~~~R~~~~~~l~~~l~~l~~~~~ 100 (233)
..++++|-..+..+..-+..++..+.
T Consensus 20 a~~~~~R~~~L~~l~~~L~~L~~EI~ 45 (170)
T PF09548_consen 20 ARRLKRRVRQLRELRRALQLLETEIR 45 (170)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566677777777777766666554
No 182
>PHA02682 ORF080 virion core protein; Provisional
Probab=43.81 E-value=1.8e+02 Score=23.69 Aligned_cols=50 Identities=20% Similarity=0.167 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHhhHhhhCCCCCCchhHHHHHHHHHHHHHHHHhHHHHHHHHhcC
Q 026774 12 YNEAIKLADDINGMISERSSMPASGPESQRHASAIRRKITILGTRLDSLQSLLSKL 67 (233)
Q Consensus 12 ~~ev~~~l~~i~~~i~~r~~~~~~~~e~~~~~~~Ir~~l~~l~~~l~~L~~~l~~~ 67 (233)
++.|++.+.+|...+... +.|...++.+|.+.-......|++|..++...
T Consensus 210 k~~ikkeladiadsvrdl------~aeS~~LtrDIE~AKstTq~AIdDLRrLl~~~ 259 (280)
T PHA02682 210 KDLIKKELADIADSVRDL------NAESLSLTRDIENAKSTTQAAIDDLRRLLTGG 259 (280)
T ss_pred HHHHHHHHHHHHHHHHhh------hhhhhhhHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 455555555555554321 22444567777777777777777777776543
No 183
>PRK10633 hypothetical protein; Provisional
Probab=43.81 E-value=39 Score=23.22 Aligned_cols=16 Identities=6% Similarity=0.586 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHHHhhC
Q 026774 218 GIVVLVVVIYMLIKYL 233 (233)
Q Consensus 218 ~lv~l~v~i~~~~k~~ 233 (233)
.-+++.++.|+++||+
T Consensus 53 ~p~lfi~l~~~~Vk~v 68 (80)
T PRK10633 53 LPLLFILLCWLMVKFI 68 (80)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3455566777777764
No 184
>TIGR00847 ccoS cytochrome oxidase maturation protein, cbb3-type. CcoS from Rhodobacter capsulatus has been shown essential for incorporation of redox-active prosthetic groups (heme, Cu) into cytochrome cbb(3) oxidase. FixS of Bradyrhizobium japonicum appears to have the same function. Members of this family are found so far in organisms with a cbb3-type cytochrome oxidase, including Neisseria meningitidis, Helicobacter pylori, Campylobacter jejuni, Caulobacter crescentus, Bradyrhizobium japonicum, and Rhodobacter capsulatus.
Probab=43.71 E-value=48 Score=20.68 Aligned_cols=11 Identities=27% Similarity=0.250 Sum_probs=4.9
Q ss_pred HHHHHHHHHHh
Q 026774 221 VLVVVIYMLIK 231 (233)
Q Consensus 221 ~l~v~i~~~~k 231 (233)
+.+++++|.+|
T Consensus 17 ~~l~~f~Wavk 27 (51)
T TIGR00847 17 VGLVAFLWSLK 27 (51)
T ss_pred HHHHHHHHHHc
Confidence 33334455544
No 185
>PRK08307 stage III sporulation protein SpoAB; Provisional
Probab=43.62 E-value=60 Score=25.52 Aligned_cols=25 Identities=16% Similarity=0.351 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc
Q 026774 76 KEMNRRKDMLANLRSKVNQMASTLN 100 (233)
Q Consensus 76 ~E~~~R~~~~~~l~~~l~~l~~~~~ 100 (233)
..+++|-..+..+..-+..++..+.
T Consensus 22 ~~~~~R~~~L~~l~~~l~~L~~EI~ 46 (171)
T PRK08307 22 KRYKERPRQLRELKAALQSLEAEIM 46 (171)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4456666666666666666666554
No 186
>PF03597 CcoS: Cytochrome oxidase maturation protein cbb3-type; InterPro: IPR004714 Cytochrome cbb3 oxidases are found almost exclusively in Proteobacteria, and represent a distinctive class of proton-pumping respiratory haem-copper oxidases (HCO) that lack many of the key structural features that contribute to the reaction cycle of the intensely studied mitochondrial cytochrome c oxidase (CcO). Expression of cytochrome cbb3 oxidase allows human pathogens to colonise anoxic tissues and agronomically important diazotrophs to sustain nitrogen fixation []. Genes encoding a cytochrome cbb3 oxidase were initially designated fixNOQP (ccoNOQP), the ccoNOQP operon is always found close to a second gene cluster, known as fixGHIS (ccoGHIS) whose expression is necessary for the assembly of a functional cbb3 oxidase. On the basis of their derived amino acid sequences each of the four proteins encoded by the ccoGHIS operon are thought to be membrane-bound. It has been suggested that they may function in concert as a multi-subunit complex, possibly playing a role in the uptake and metabolism of copper required for the assembly of the binuclear centre of cytochrome cbb3 oxidase.
Probab=43.23 E-value=50 Score=19.96 Aligned_cols=10 Identities=10% Similarity=0.199 Sum_probs=4.4
Q ss_pred HHHHHHHHHh
Q 026774 222 LVVVIYMLIK 231 (233)
Q Consensus 222 l~v~i~~~~k 231 (233)
.+++++|.+|
T Consensus 17 ~l~~f~Wavk 26 (45)
T PF03597_consen 17 ALAAFLWAVK 26 (45)
T ss_pred HHHHHHHHHc
Confidence 3334444444
No 187
>PF01405 PsbT: Photosystem II reaction centre T protein; InterPro: IPR001743 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbT found in PSII, which is thought to be associated with the D1 (PsbA) - D2 (PsbD) heterodimer. PsbT may be involved in the formation and/or stabilisation of dimeric PSII complexes, because in the absence of this protein dimeric PSII complexes were found to be less abundant. Furthermore, although PsbT does not confer photo-protection, it is required for the efficient recovery of photo-damaged PSII [].; GO: 0015979 photosynthesis, 0009523 photosystem II, 0009539 photosystem II reaction center, 0016020 membrane; PDB: 3BZ1_T 1S5L_t 2AXT_t 3KZI_T 3PRQ_T 3BZ2_T 3PRR_T 4FBY_g 3A0H_t 3A0B_T ....
Probab=43.19 E-value=30 Score=18.83 Aligned_cols=15 Identities=20% Similarity=0.408 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHHH
Q 026774 213 LLAVIGIVVLVVVIY 227 (233)
Q Consensus 213 ~~l~i~lv~l~v~i~ 227 (233)
++++..+.++++.|+
T Consensus 8 ~ll~~tlgilffAI~ 22 (29)
T PF01405_consen 8 FLLIGTLGILFFAIF 22 (29)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhh
Confidence 444445555555554
No 188
>PF12420 DUF3671: Protein of unknown function ; InterPro: IPR022139 This domain family is found in eukaryotes, and is typically between 96 and 116 amino acids in length.
Probab=43.16 E-value=30 Score=24.97 Aligned_cols=15 Identities=40% Similarity=0.795 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHhh
Q 026774 218 GIVVLVVVIYMLIKY 232 (233)
Q Consensus 218 ~lv~l~v~i~~~~k~ 232 (233)
+.+++++++|.++|.
T Consensus 86 ~~i~ll~iiYi~~Kv 100 (104)
T PF12420_consen 86 ITIILLVIIYIFIKV 100 (104)
T ss_pred HHHHHHHHHHHHHhh
Confidence 344555566666664
No 189
>PF07432 Hc1: Histone H1-like protein Hc1; InterPro: IPR010886 This family consists of several bacterial histone H1-like Hc1 proteins, which are found in Chlamydiae and Bacteroidetes species. Chlamydiae are prokaryotic obligate intracellular parasites that undergo a biphasic life cycle involving an infectious, extracellular form known as elementary bodies and an intracellular, replicating form termed reticulate bodies. The gene coding for Hc1 is expressed only during the late stages of the chlamydial life cycle concomitant with the reorganisation of chlamydial reticulate bodies into elementary bodies, suggesting that the Hc1 protein plays a role in the condensation of chlamydial chromatin during intracellular differentiation [].; GO: 0003677 DNA binding
Probab=43.12 E-value=1.3e+02 Score=22.12 Aligned_cols=48 Identities=17% Similarity=0.275 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHhcC
Q 026774 150 LEETVVSTKHIALAVNEELDLHTRLIDDLDQHVDVTDSRLRRVQKNLAILNKRTK 204 (233)
Q Consensus 150 l~~~v~~l~~~~~~i~~ev~~Q~~~ld~i~~~vd~~~~~l~~~~~~l~~~~~~~~ 204 (233)
|.+++..++++...|..+. +.+|.+---+..++..++-.|.++++..+
T Consensus 2 lKdt~~kmkeL~e~~~~D~-------~K~EKGNKAAGtRaRK~sleLeKLaKefR 49 (123)
T PF07432_consen 2 LKDTFKKMKELLESFEADA-------EKAEKGNKAAGTRARKASLELEKLAKEFR 49 (123)
T ss_pred hHHHHHHHHHHHHHHHHHH-------HHHHccchHHHHHHHHHHHHHHHHHHHHH
Confidence 3455555666666555555 34688888889999999999998877543
No 190
>PRK15396 murein lipoprotein; Provisional
Probab=43.10 E-value=1.1e+02 Score=20.95 Aligned_cols=21 Identities=10% Similarity=0.124 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhc
Q 026774 183 DVTDSRLRRVQKNLAILNKRT 203 (233)
Q Consensus 183 d~~~~~l~~~~~~l~~~~~~~ 203 (233)
..+.+.-.++|.||.-...++
T Consensus 56 ~~a~~eA~raN~RlDn~~~sy 76 (78)
T PRK15396 56 QAAKDDAARANQRLDNQATKY 76 (78)
T ss_pred HHHHHHHHHHHHHHHHHHHhc
Confidence 334455555666665555443
No 191
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=42.97 E-value=2.1e+02 Score=24.35 Aligned_cols=63 Identities=19% Similarity=0.405 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHh
Q 026774 140 MREQDEGLEKLEETVVSTKHIALAVNEELDLHTRLIDDLDQHVDVTDSRLRRVQKNLAILNKR 202 (233)
Q Consensus 140 ~~~qd~~l~~l~~~v~~l~~~~~~i~~ev~~Q~~~ld~i~~~vd~~~~~l~~~~~~l~~~~~~ 202 (233)
+..+|..|..+......+..--..+...|++=..-+++....++.+...++...++|..+-..
T Consensus 33 i~~~ds~l~~~~~~~~~~q~ei~~L~~qi~~~~~k~~~~~~~i~~~~~eik~l~~eI~~~~~~ 95 (265)
T COG3883 33 IQNQDSKLSELQKEKKNIQNEIESLDNQIEEIQSKIDELQKEIDQSKAEIKKLQKEIAELKEN 95 (265)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 192
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=42.92 E-value=1.5e+02 Score=25.22 Aligned_cols=61 Identities=16% Similarity=0.272 Sum_probs=43.0
Q ss_pred CchhHHHHHHHHHHHHHHHHhHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 026774 36 GPESQRHASAIRRKITILGTRLDSLQSLLSKLPGKQPISEKEMNRRKDMLANLRSKVNQMA 96 (233)
Q Consensus 36 ~~e~~~~~~~Ir~~l~~l~~~l~~L~~~l~~~~~~~~~~~~E~~~R~~~~~~l~~~l~~l~ 96 (233)
..+...+...|+..+..+...+..+++.+....+.-.--..-+.+|+.-++....++..|.
T Consensus 157 ~~e~~~iE~~l~~ai~~~~~~~~~~~~~l~~l~~de~~Le~KIekkk~ELER~qKRL~sLq 217 (267)
T PF10234_consen 157 PLELNEIEKALKEAIKAVQQQLQQTQQQLNNLASDEANLEAKIEKKKQELERNQKRLQSLQ 217 (267)
T ss_pred CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3456678888899999999999999888865432211124557777777777777777665
No 193
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=42.77 E-value=3.9e+02 Score=27.35 Aligned_cols=22 Identities=27% Similarity=0.395 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 026774 147 LEKLEETVVSTKHIALAVNEEL 168 (233)
Q Consensus 147 l~~l~~~v~~l~~~~~~i~~ev 168 (233)
+..|..++...++.-..+..|+
T Consensus 399 i~~l~~~i~~~ke~e~~lq~e~ 420 (1200)
T KOG0964|consen 399 IEKLKRGINDTKEQENILQKEI 420 (1200)
T ss_pred HHHHHHHHhhhhhHHHHHHHHH
Confidence 3334444444443333333333
No 194
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=42.65 E-value=32 Score=30.83 Aligned_cols=22 Identities=27% Similarity=0.611 Sum_probs=12.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhC
Q 026774 212 MLLAVIGIVVLVVVIYMLIKYL 233 (233)
Q Consensus 212 i~~l~i~lv~l~v~i~~~~k~~ 233 (233)
+++++|++++++++.|++.++|
T Consensus 45 v~~~ii~lvv~~~l~~~l~~v~ 66 (400)
T COG3071 45 VIFLIIALVVLYLLEWLLRRVL 66 (400)
T ss_pred HHHHHHHHHHHHHHHHHHHHHh
Confidence 3445555566665666665553
No 195
>PF00523 Fusion_gly: Fusion glycoprotein F0; InterPro: IPR000776 The fusion glycoproteins from this family are found in ssRNA negative-strand viruses. This protein directs fusion of viral and cellular membranes, resulting in viral penetration, and can direct fusion of infected cells with adjoining cells, resulting in the formation of syncytia. The mature form is a dimer of polypeptides F1 and F2 linked by a disulphide bond [].; GO: 0006948 induction by virus of host cell-cell fusion; PDB: 2FYZ_D 3MAW_B 4DAG_A 1G5G_D 1SVF_A 2B9B_A 1G2C_M 3RRT_A 3RRR_D 3RKI_A ....
Probab=42.61 E-value=39 Score=31.39 Aligned_cols=20 Identities=10% Similarity=0.245 Sum_probs=8.1
Q ss_pred HhHhHHHHHHHHHHHHHHHH
Q 026774 178 LDQHVDVTDSRLRRVQKNLA 197 (233)
Q Consensus 178 i~~~vd~~~~~l~~~~~~l~ 197 (233)
++.+..++...++.+...++
T Consensus 436 IS~eL~~vn~sL~~A~~~L~ 455 (490)
T PF00523_consen 436 ISSELGQVNNSLNNAKDLLD 455 (490)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHH
Confidence 33444444444444444333
No 196
>TIGR02833 spore_III_AB stage III sporulation protein AB. A comparative genome analysis of all sequenced genomes of shows a number of proteins conserved strictly among the endospore-forming subset of the Firmicutes. This protein, a member of this panel, is designated stage III sporulation protein AB.
Probab=42.14 E-value=64 Score=25.34 Aligned_cols=25 Identities=12% Similarity=0.270 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhc
Q 026774 76 KEMNRRKDMLANLRSKVNQMASTLN 100 (233)
Q Consensus 76 ~E~~~R~~~~~~l~~~l~~l~~~~~ 100 (233)
..+++|-..+..+..-+..++..+.
T Consensus 21 ~~~~~R~~~L~~l~~~l~~L~~EI~ 45 (170)
T TIGR02833 21 NRFKERPRQLRQLINALQSLEAEIV 45 (170)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4456666666666666666666553
No 197
>PF05552 TM_helix: Conserved TM helix; InterPro: IPR008910 This alignment represents a conserved transmembrane helix as well as some flanking sequence. It is often found in association with a Mechanosensitive (MS) channel IPR006685 from INTERPRO.; PDB: 2VV5_F 2OAU_E.
Probab=41.87 E-value=33 Score=21.22 Aligned_cols=16 Identities=19% Similarity=0.683 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHHHHhh
Q 026774 217 IGIVVLVVVIYMLIKY 232 (233)
Q Consensus 217 i~lv~l~v~i~~~~k~ 232 (233)
++.++++++.|++.|+
T Consensus 19 v~AilIl~vG~~va~~ 34 (53)
T PF05552_consen 19 VGAILILIVGWWVAKF 34 (53)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444455566666554
No 198
>PRK14710 hypothetical protein; Provisional
Probab=41.84 E-value=36 Score=22.69 Aligned_cols=18 Identities=33% Similarity=0.491 Sum_probs=8.5
Q ss_pred hHHHHHHHHHHHHHHHHH
Q 026774 209 CMCMLLAVIGIVVLVVVI 226 (233)
Q Consensus 209 ~~~i~~l~i~lv~l~v~i 226 (233)
.++|++..|++++++.++
T Consensus 10 km~ififaiii~v~lcv~ 27 (86)
T PRK14710 10 KMIIFIFAIIIIVVLCVI 27 (86)
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 345555444444444443
No 199
>PRK05585 yajC preprotein translocase subunit YajC; Validated
Probab=41.79 E-value=30 Score=25.05 Aligned_cols=9 Identities=33% Similarity=0.855 Sum_probs=3.7
Q ss_pred HHHHHHHHH
Q 026774 221 VLVVVIYML 229 (233)
Q Consensus 221 ~l~v~i~~~ 229 (233)
++++++||+
T Consensus 26 ii~~i~yf~ 34 (106)
T PRK05585 26 VFFAIFYFL 34 (106)
T ss_pred HHHHHHHHH
Confidence 334444443
No 200
>COG3462 Predicted membrane protein [Function unknown]
Probab=41.74 E-value=43 Score=24.36 Aligned_cols=10 Identities=30% Similarity=0.810 Sum_probs=3.7
Q ss_pred HHHHHHHHHH
Q 026774 219 IVVLVVVIYM 228 (233)
Q Consensus 219 lv~l~v~i~~ 228 (233)
++++++++|+
T Consensus 61 li~lvvfm~~ 70 (117)
T COG3462 61 LIFLVVFMFY 70 (117)
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 201
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=41.47 E-value=99 Score=22.93 Aligned_cols=21 Identities=14% Similarity=0.385 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHHHHhc
Q 026774 80 RRKDMLANLRSKVNQMASTLN 100 (233)
Q Consensus 80 ~R~~~~~~l~~~l~~l~~~~~ 100 (233)
.+-..+.+|+..+.+++..|+
T Consensus 93 EK~E~veEL~~Dv~DlK~myr 113 (120)
T PF12325_consen 93 EKSEEVEELRADVQDLKEMYR 113 (120)
T ss_pred chHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555555543
No 202
>PF05283 MGC-24: Multi-glycosylated core protein 24 (MGC-24); InterPro: IPR007947 CD164 is a mucin-like receptor, or sialomucin, with specificity in receptor/ ligand interactions that depends on the structural characteristics of the mucin-like receptor. Its functions include mediating, or regulating, haematopoietic progenitor cell adhesion and the negative regulation of their growth and/or-differentiation. It exists in the native state as a disulphide- linked homodimer of two 80-85kDa subunits. It is usually expressed by CD34+ and CD341o/- haematopoietic stem cells and associated microenvironmental cells. It contains, in its extracellular region, two mucin domains (I and II) linked by a non-mucin domain, which has been predicted to contain intra- disulphide bridges. This receptor may play a key role in haematopoiesis by facilitating the adhesion of human CD34+ cells to bone marrow stroma and by negatively regulating CD34+ CD341o/- haematopoietic progenitor cell proliferation. These effects involve the CD164 class I and/or II epitopes recognised by the monoclonal antibodies (mAbs) 105A5 and 103B2/9E10. These epitopes are carbohydrate-dependent and are located on the N-terminal mucin domain I [, ]. It has been found that murine MGC-24v and rat endolyn share significant sequence similarities with human CD164. However, CD164 lacks the consensus glycosaminoglycan (GAG)-attachment site found in MGC-24; it is possible that GAG-association is responsible for the high molecular weight of the epithelial-derived MGC-24 glycoprotein []. Genomic structure studies have placed CD164 within the mucin-subgroup that comprises multiple exons, and demonstrate the diverse chromosomal distribution of this family of molecules. Molecules with such multiple exons may have sophisticated regulatory mechanisms that involve not only post-translational modifications of the oligosaccharide side chains, but also differential exon usage. Although differences in the intron and exon sizes are seen between the mouse and human genes, the predicted proteins are similar in size and structure, maintaining functionally important motifs that regulate cell proliferation or subcellular distribution []. CD164 is a gene whose expression depends on differential usage of poly- adenylation sites within the 3'-UTR. The conserved distribution of the 3.2- and 1.2-kb CD164 transcripts between mouse and human suggests that (i) a mechanism may exist to regulate tissue-specific polyadenylation, and (ii) differences in polyadenylation are important for the expression and function of CD164 in different tissues. Two other aspects of the structure of CD164 are of particular interest. First, it shares one of several conserved features of a cytokine-binding pocket - in this respect, it is notable that evidence exists for a class of cell-surface sialomucin modulators that directly interact with growth factor receptors to regulate their response to physiological ligands. Second, its cytoplasmic tail contains a C-terminal YHTL motif found in many endocytic membrane proteins or receptors. These Tyr-based motifs bind to adaptor proteins, which mediate the sorting of membrane proteins into transport vesicles from the plasma membrane to the endosomes, and between intracellular compartments.
Probab=41.38 E-value=24 Score=28.28 Aligned_cols=13 Identities=23% Similarity=0.623 Sum_probs=7.9
Q ss_pred HHHHHHHHHHhhC
Q 026774 221 VLVVVIYMLIKYL 233 (233)
Q Consensus 221 ~l~v~i~~~~k~~ 233 (233)
.|.-++||+.||.
T Consensus 172 Gv~aI~ff~~KF~ 184 (186)
T PF05283_consen 172 GVLAIIFFLYKFC 184 (186)
T ss_pred HHHHHHHHHhhhc
Confidence 3344677777774
No 203
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=41.30 E-value=1.7e+02 Score=22.72 Aligned_cols=40 Identities=25% Similarity=0.452 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHhcCCC-CCCCCHHHHHHHH
Q 026774 43 ASAIRRKITILGTRLDSLQSLLSKLPG-KQPISEKEMNRRK 82 (233)
Q Consensus 43 ~~~Ir~~l~~l~~~l~~L~~~l~~~~~-~~~~~~~E~~~R~ 82 (233)
+.+++..+..++..+..|+.-|..+.+ ...+++.|+.+=.
T Consensus 111 ~~el~~~i~~l~~e~~~l~~kL~~l~~~~~~vs~ee~~~~~ 151 (169)
T PF07106_consen 111 NEELREEIEELEEEIEELEEKLEKLRSGSKPVSPEEKEKLE 151 (169)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHH
Confidence 456666677777777777766654332 2246777765433
No 204
>PHA03049 IMV membrane protein; Provisional
Probab=41.15 E-value=47 Score=21.84 Aligned_cols=7 Identities=29% Similarity=0.529 Sum_probs=2.6
Q ss_pred HHHHHHH
Q 026774 217 IGIVVLV 223 (233)
Q Consensus 217 i~lv~l~ 223 (233)
|++++++
T Consensus 10 ICVaIi~ 16 (68)
T PHA03049 10 ICVVIIG 16 (68)
T ss_pred HHHHHHH
Confidence 3333333
No 205
>KOG1690 consensus emp24/gp25L/p24 family of membrane trafficking proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=41.15 E-value=94 Score=25.27 Aligned_cols=31 Identities=16% Similarity=0.073 Sum_probs=18.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026774 138 QIMREQDEGLEKLEETVVSTKHIALAVNEEL 168 (233)
Q Consensus 138 ~~~~~qd~~l~~l~~~v~~l~~~~~~i~~ev 168 (233)
+...+..+..+.++..|+.|.+--..|..|-
T Consensus 132 ~l~a~~ke~~k~l~~Rv~~L~~~~~~IrkEQ 162 (215)
T KOG1690|consen 132 NLDAQIKETDKLLEGRVRQLNSRLESIRKEQ 162 (215)
T ss_pred hhhhhhhhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 4445555666777776666665555554443
No 206
>PF12108 SF3a60_bindingd: Splicing factor SF3a60 binding domain; InterPro: IPR021966 This domain is found in eukaryotes. This domain is about 30 amino acids in length. This domain has a single completely conserved residue Y that may be functionally important. SF3a60 makes up the SF3a complex with SF3a66 and SF3a120. This domain is the binding site of SF3a60 for SF3a120. The SF3a complex is part of the spliceosome, a protein complex involved in splicing mRNA after transcription. ; PDB: 2DT7_A.
Probab=40.88 E-value=28 Score=18.86 Aligned_cols=15 Identities=20% Similarity=0.319 Sum_probs=10.2
Q ss_pred CCCCcHHHHHHHHHH
Q 026774 3 SASDSWIKEYNEAIK 17 (233)
Q Consensus 3 s~~D~~~~~~~ev~~ 17 (233)
|+.|||...|+.+++
T Consensus 4 s~~d~f~eFY~rlk~ 18 (28)
T PF12108_consen 4 SGGDPFSEFYERLKE 18 (28)
T ss_dssp -S--HHHHHHHHHHH
T ss_pred CCCChHHHHHHHHHH
Confidence 588999999988764
No 207
>PF04210 MtrG: Tetrahydromethanopterin S-methyltransferase, subunit G ; InterPro: IPR005866 This model describes the N5-methyltetrahydromethanopterin: coenzyme M methyltransferase subunit G in methanogenic archaea. This methyltranferase is a membrane-associated enzyme complex that uses methyl-transfer reaction to drive a sodium-ion pump. Archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase is involved in the transfer of a methyl group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of the methyl moiety in methyl-coenzyme M by another enzyme methyl-coenzyme M reductase.; GO: 0030269 tetrahydromethanopterin S-methyltransferase activity, 0015948 methanogenesis, 0016021 integral to membrane
Probab=40.68 E-value=1.1e+02 Score=20.38 Aligned_cols=27 Identities=7% Similarity=0.215 Sum_probs=19.5
Q ss_pred HHHHhHhHHHHHHHHHHHHHHHHHHHH
Q 026774 175 IDDLDQHVDVTDSRLRRVQKNLAILNK 201 (233)
Q Consensus 175 ld~i~~~vd~~~~~l~~~~~~l~~~~~ 201 (233)
..++....|....+++.++.++..-..
T Consensus 14 ~~~i~~rLd~iEeKvEf~~~Ei~Qr~G 40 (70)
T PF04210_consen 14 FNEIMKRLDEIEEKVEFTNAEIAQRAG 40 (70)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHh
Confidence 345667778888999998888764433
No 208
>PHA02650 hypothetical protein; Provisional
Probab=40.66 E-value=33 Score=23.37 Aligned_cols=24 Identities=8% Similarity=0.337 Sum_probs=10.3
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHH
Q 026774 206 GCTCMCMLLAVIGIVVLVVVIYML 229 (233)
Q Consensus 206 ~~~~~~i~~l~i~lv~l~v~i~~~ 229 (233)
++.++++++.+++++++.++...+
T Consensus 49 ~~~~ii~i~~v~i~~l~~flYLK~ 72 (81)
T PHA02650 49 GQNFIFLIFSLIIVALFSFFVFKG 72 (81)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444444444433
No 209
>TIGR02115 potass_kdpF K+-transporting ATPase, KdpF subunit. This model describes a very small integral membrane peptide KdpF, a subunit of the K(+)-translocating Kdp complex. It is found upstream of the KdpA subunit (TIGR00680). Because of its very small size and highly hydrophobic character, it is sometimes missed in genome annotation.
Probab=40.31 E-value=41 Score=17.88 Aligned_cols=13 Identities=15% Similarity=0.585 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHHH
Q 026774 218 GIVVLVVVIYMLI 230 (233)
Q Consensus 218 ~lv~l~v~i~~~~ 230 (233)
++.+++.++|-++
T Consensus 7 ~~~L~~YL~~aLl 19 (26)
T TIGR02115 7 AVGLFIYLFYALL 19 (26)
T ss_pred HHHHHHHHHHHHh
Confidence 3334444444443
No 210
>PHA02975 hypothetical protein; Provisional
Probab=39.85 E-value=34 Score=22.63 Aligned_cols=17 Identities=12% Similarity=0.296 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHHHH
Q 026774 211 CMLLAVIGIVVLVVVIY 227 (233)
Q Consensus 211 ~i~~l~i~lv~l~v~i~ 227 (233)
++++.+++++++.++..
T Consensus 49 i~i~~v~~~~~~~flYL 65 (69)
T PHA02975 49 IFIIFITCIAVFTFLYL 65 (69)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 44444444444444443
No 211
>PF05377 FlaC_arch: Flagella accessory protein C (FlaC); InterPro: IPR008039 Although archaeal flagella appear superficially similar to those of bacteria, they are quite distinct []. In several archaea, the flagellin genes are followed immediately by the flagellar accessory genes flaCDEFGHIJ. The gene products may have a role in translocation, secretion, or assembly of the flagellum. FlaC is a protein whose exact role is unknown but it has been shown to be membrane-associated (by immuno-blotting fractionated cells) [].
Probab=39.79 E-value=98 Score=19.62 Aligned_cols=34 Identities=15% Similarity=0.261 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhH
Q 026774 149 KLEETVVSTKHIALAVNEELDLHTRLIDDLDQHV 182 (233)
Q Consensus 149 ~l~~~v~~l~~~~~~i~~ev~~Q~~~ld~i~~~v 182 (233)
+|+..+.++...-..+..|.++=.+-++.|+.+|
T Consensus 4 elEn~~~~~~~~i~tvk~en~~i~~~ve~i~env 37 (55)
T PF05377_consen 4 ELENELPRIESSINTVKKENEEISESVEKIEENV 37 (55)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444433333333433333444455444
No 212
>PF11137 DUF2909: Protein of unknown function (DUF2909); InterPro: IPR021313 This is a family of proteins conserved in Proteobacteria of unknown function.
Probab=39.77 E-value=55 Score=21.35 Aligned_cols=20 Identities=30% Similarity=0.517 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 026774 212 MLLAVIGIVVLVVVIYMLIK 231 (233)
Q Consensus 212 i~~l~i~lv~l~v~i~~~~k 231 (233)
+++++.+++-++-..|+++|
T Consensus 6 v~lll~ii~sL~saL~~l~k 25 (63)
T PF11137_consen 6 VLLLLAIIASLFSALFFLVK 25 (63)
T ss_pred HHHHHHHHHHHHHHHHHHhh
Confidence 34444444455556666665
No 213
>PF15106 TMEM156: TMEM156 protein family
Probab=39.71 E-value=36 Score=27.80 Aligned_cols=28 Identities=18% Similarity=0.441 Sum_probs=21.5
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHhhC
Q 026774 206 GCTCMCMLLAVIGIVVLVVVIYMLIKYL 233 (233)
Q Consensus 206 ~~~~~~i~~l~i~lv~l~v~i~~~~k~~ 233 (233)
.|.|-+...++|++|++|.+|+++-|.|
T Consensus 171 ~CsmKITWYvLVllVfiflii~iI~KIl 198 (226)
T PF15106_consen 171 TCSMKITWYVLVLLVFIFLIILIIYKIL 198 (226)
T ss_pred eeehhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 4666677888888888888888887754
No 214
>smart00503 SynN Syntaxin N-terminal domain. Three-helix domain that (in Sso1p) slows the rate of its reaction with the SNAP-25 homologue Sec9p
Probab=39.12 E-value=1.4e+02 Score=21.15 Aligned_cols=62 Identities=16% Similarity=0.265 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHh
Q 026774 141 REQDEGLEKLEETVVSTKHIALAVNEELDLHTRLIDDLDQHVDVTDSRLRRVQKNLAILNKR 202 (233)
Q Consensus 141 ~~qd~~l~~l~~~v~~l~~~~~~i~~ev~~Q~~~ld~i~~~vd~~~~~l~~~~~~l~~~~~~ 202 (233)
++....|..|...+..|..+-..++...+.-..+=++++..++.+.......+..|+.+-+.
T Consensus 11 ~~I~~~I~~i~~~v~~l~~l~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~lk~l~~~ 72 (117)
T smart00503 11 EEIRANIQKISQNVAELQKLHEELLTPPDADKELREKLERLIDDIKRLAKEIRAKLKELEKE 72 (117)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34445666666666666666666665554223444566666666666666666666655443
No 215
>TIGR01732 tiny_TM_bacill conserved hypothetical tiny transmembrane protein. This model represents a family of hypothetical proteins, half of which are 40 residues or less in length. Members are found only in spore-forming species. A Gly-rich variable region is followed by a strongly conserved, highly hydrophobic region, predicted to form a transmembrane helix, ending with an invariant Gly. The consensus for this stretch is FALLVVFILLIIV.
Probab=39.03 E-value=38 Score=17.94 Aligned_cols=10 Identities=20% Similarity=0.464 Sum_probs=3.9
Q ss_pred HHHHHHHHHH
Q 026774 212 MLLAVIGIVV 221 (233)
Q Consensus 212 i~~l~i~lv~ 221 (233)
+++|+|++|+
T Consensus 11 ivVLFILLII 20 (26)
T TIGR01732 11 IVVLFILLVI 20 (26)
T ss_pred HHHHHHHHHH
Confidence 3334333333
No 216
>PHA02902 putative IMV membrane protein; Provisional
Probab=38.95 E-value=56 Score=21.38 Aligned_cols=17 Identities=12% Similarity=0.528 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHHH
Q 026774 213 LLAVIGIVVLVVVIYML 229 (233)
Q Consensus 213 ~~l~i~lv~l~v~i~~~ 229 (233)
+++.|+++++..+||-+
T Consensus 7 vi~~v~v~Ivclliya~ 23 (70)
T PHA02902 7 VILAVIVIIFCLLIYAA 23 (70)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 34444444444455544
No 217
>PF15361 RIC3: Resistance to inhibitors of cholinesterase homologue 3
Probab=38.79 E-value=45 Score=25.83 Aligned_cols=26 Identities=19% Similarity=0.384 Sum_probs=17.0
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHhh
Q 026774 207 CTCMCMLLAVIGIVVLVVVIYMLIKY 232 (233)
Q Consensus 207 ~~~~~i~~l~i~lv~l~v~i~~~~k~ 232 (233)
..++..++=+=.|.|++|++|.+.|.
T Consensus 79 ~g~~~~imPlYtiGI~~f~lY~l~Ki 104 (152)
T PF15361_consen 79 KGLMGQIMPLYTIGIVLFILYTLFKI 104 (152)
T ss_pred CchhhhHhHHHHHHHHHHHHHHHHHH
Confidence 44444444445677777888888884
No 218
>PF06682 DUF1183: Protein of unknown function (DUF1183); InterPro: IPR009567 This family consists of several eukaryotic proteins of around 360 residues in length. The function of this family is unknown.
Probab=38.75 E-value=25 Score=30.72 Aligned_cols=13 Identities=38% Similarity=0.708 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHHH
Q 026774 217 IGIVVLVVVIYML 229 (233)
Q Consensus 217 i~lv~l~v~i~~~ 229 (233)
|+++||+++||.+
T Consensus 163 i~l~vla~ivY~~ 175 (318)
T PF06682_consen 163 IFLLVLAFIVYSL 175 (318)
T ss_pred HHHHHHHHHHHHH
Confidence 3344444444443
No 219
>TIGR02132 phaR_Bmeg polyhydroxyalkanoic acid synthase, PhaR subunit. This model describes a protein, PhaR, localized to polyhydroxyalkanoic acid (PHA) inclusion granules in Bacillus cereus and related species. PhaR is required for PHA biosynthesis along with PhaC and may be a regulatory subunit.
Probab=38.44 E-value=2e+02 Score=22.89 Aligned_cols=46 Identities=17% Similarity=0.176 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHH
Q 026774 145 EGLEKLEETVVSTKHIALAVNEELDLHTRLIDDLDQHVDVTDSRLR 190 (233)
Q Consensus 145 ~~l~~l~~~v~~l~~~~~~i~~ev~~Q~~~ld~i~~~vd~~~~~l~ 190 (233)
+.++++-..++...+.+-..+.+|..=..-|..+++.+|+.-.-|+
T Consensus 93 e~fdd~~d~l~~q~eq~~~~~~~v~~~~q~~~~l~~K~D~~L~llE 138 (189)
T TIGR02132 93 EFFDDKFDELEAQQEQAPALKKDVTKLKQDIKSLDKKLDKILELLE 138 (189)
T ss_pred HHHHHHHHHHHHHHhhCchHHhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3344444444433444444444444444444455555554444444
No 220
>PF11293 DUF3094: Protein of unknown function (DUF3094); InterPro: IPR021444 This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.
Probab=38.19 E-value=75 Score=20.04 Aligned_cols=24 Identities=8% Similarity=0.228 Sum_probs=13.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHh
Q 026774 208 TCMCMLLAVIGIVVLVVVIYMLIK 231 (233)
Q Consensus 208 ~~~~i~~l~i~lv~l~v~i~~~~k 231 (233)
-|..+++++++++.+..+-+++.+
T Consensus 30 P~~Ll~~li~Vv~gl~llS~ll~~ 53 (55)
T PF11293_consen 30 PWRLLIVLIVVVIGLGLLSRLLSR 53 (55)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555666666666654
No 221
>PF13179 DUF4006: Family of unknown function (DUF4006)
Probab=37.83 E-value=60 Score=21.40 Aligned_cols=14 Identities=29% Similarity=0.446 Sum_probs=7.7
Q ss_pred HHHHHHHHHHHHHh
Q 026774 218 GIVVLVVVIYMLIK 231 (233)
Q Consensus 218 ~lv~l~v~i~~~~k 231 (233)
++.+++++.|+.+|
T Consensus 23 LLsIl~~lt~~ai~ 36 (66)
T PF13179_consen 23 LLSILAFLTYWAIK 36 (66)
T ss_pred HHHHHHHHHHHHHH
Confidence 34455556666554
No 222
>PF06084 Cytomega_TRL10: Cytomegalovirus TRL10 protein; InterPro: IPR009284 This family consists of several Cytomegalovirus TRL10 proteins. TRL10 represents a structural component of the virus particle and like the other HCMV envelope glycoproteins, is present in a disulphide-linked complex [].
Probab=37.63 E-value=16 Score=26.81 Aligned_cols=10 Identities=40% Similarity=0.723 Sum_probs=4.4
Q ss_pred HHHHHHHHHH
Q 026774 218 GIVVLVVVIY 227 (233)
Q Consensus 218 ~lv~l~v~i~ 227 (233)
+++++||+||
T Consensus 71 illviffviy 80 (150)
T PF06084_consen 71 ILLVIFFVIY 80 (150)
T ss_pred HHHHHhheeE
Confidence 3444444444
No 223
>PF14362 DUF4407: Domain of unknown function (DUF4407)
Probab=37.57 E-value=2.6e+02 Score=23.85 Aligned_cols=15 Identities=20% Similarity=0.474 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHhhC
Q 026774 219 IVVLVVVIYMLIKYL 233 (233)
Q Consensus 219 lv~l~v~i~~~~k~~ 233 (233)
+++++=+..+++|++
T Consensus 271 lfi~iel~Pv~~Kl~ 285 (301)
T PF14362_consen 271 LFIAIELLPVLFKLL 285 (301)
T ss_pred HHHHHHHHHHHHHHh
Confidence 444444666666653
No 224
>PF05739 SNARE: SNARE domain; InterPro: IPR000727 The process of vesicular fusion with target membranes depends on a set of SNAREs (SNAP-Receptors), which are associated with the fusing membranes [, ]. Target SNAREs (t-SNAREs) are localised on the target membrane and belong to two different families, the syntaxin-like family and the SNAP-25 like family. One member of each family, together with a v-SNARE localised on the vesicular membrane, are required for fusion. The Syntaxins are type-I transmembrane proteins that contain several regions with coiled-coil propensity in their cytosolic part, the SNARE motif. SNAP-25 (IPR000928 from INTERPRO) is a protein consisting of two coiled-coil regions, which is associated with the membrane by lipid anchors. SNARE motifs assemble into parallel four helix bundles stabilised by the burial of these hydrophobic helix faces in the bundle core. Monomeric SNARE motifs are disordered so this assembly reaction is accompanied by a dramatic increase in alpha-helical secondary structure []. The parallel arrangement of SNARE motifs within complexes bring the transmembrane anchors, and the two membranes, into close proximity. Recently, it was shown that the two coiled-coil regions of SNAP-25 and one of the coiled-coil regions of the syntaxins are related []. This domain is found in both Syntaxin and SNAP-25 families as well as in other proteins.; GO: 0005515 protein binding; PDB: 1URQ_B 3RL0_R 1HVV_B 1SFC_B 1N7S_B 3IPD_B 3C98_B 3HD7_F 3RK2_B 1KIL_B ....
Probab=37.32 E-value=1e+02 Score=19.23 Aligned_cols=58 Identities=16% Similarity=0.250 Sum_probs=40.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHH
Q 026774 138 QIMREQDEGLEKLEETVVSTKHIALAVNEELDLHTRLIDDLDQHVDVTDSRLRRVQKN 195 (233)
Q Consensus 138 ~~~~~qd~~l~~l~~~v~~l~~~~~~i~~ev~~Q~~~ld~i~~~vd~~~~~l~~~~~~ 195 (233)
+.+......+..|......+...-..=+..|+.=..-++.....+..+..+|..+.+.
T Consensus 4 ~~l~~l~~~i~~l~~~~~~i~~ev~~Q~~~ld~i~~~vd~~~~~l~~~~~~l~ka~~~ 61 (63)
T PF05739_consen 4 EELDELEQSIQELKQMFQDIGEEVEEQNEMLDRIEDNVDRANENLKKGNKKLKKALKY 61 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3445555666666666666666666666677777777788888888888888777654
No 225
>PF02790 COX2_TM: Cytochrome C oxidase subunit II, transmembrane domain This family corresponds to chains b and o.; InterPro: IPR011759 Cytochrome c oxidase (1.9.3.1 from EC) [, ] is an oligomeric enzymatic complex which is a component of the respiratory chain and is involved in the transfer of electrons from cytochrome c to oxygen. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. The enzyme complex consists of 3-4 subunits (prokaryotes) to up to 13 polypeptides (mammals). Subunit 2 (CO II) transfers the electrons from cytochrome c to the catalytic subunit 1. It contains two adjacent transmembrane regions in its N terminus and the major part of the protein is exposed to the periplasmic or to the mitochondrial intermembrane space, respectively. CO II provides the substrate-binding site and contains a copper centre called Cu(A) (see IPR001505 from INTERPRO), probably the primary acceptor in cytochrome c oxidase. An exception is the corresponding subunit of the cbb3-type oxidase which lacks the copper A redox-centre. Several bacterial CO II have a C-terminal extension that contains a covalently bound haem c. The N-terminal domain of cytochrome C oxidase contains two transmembrane alpha-helices. ; GO: 0004129 cytochrome-c oxidase activity, 0005507 copper ion binding, 0009055 electron carrier activity, 0022900 electron transport chain, 0016021 integral to membrane; PDB: 3VRJ_C 2EIN_B 3AG3_B 2DYR_O 3AG1_B 2EIK_O 3ASN_B 1OCR_B 2EIJ_B 1OCC_O ....
Probab=37.29 E-value=62 Score=21.67 Aligned_cols=17 Identities=29% Similarity=0.524 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHh
Q 026774 215 AVIGIVVLVVVIYMLIK 231 (233)
Q Consensus 215 l~i~lv~l~v~i~~~~k 231 (233)
++|.+++.++++|++.|
T Consensus 32 ~~I~~~V~~~l~~~~~~ 48 (84)
T PF02790_consen 32 IFIFVFVFYFLIYFLFN 48 (84)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred hheeeeEeeeccccccc
Confidence 33444455555555544
No 226
>smart00502 BBC B-Box C-terminal domain. Coiled coil region C-terminal to (some) B-Box domains
Probab=37.26 E-value=1.5e+02 Score=21.00 Aligned_cols=54 Identities=13% Similarity=0.183 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHH-HHHHHHhHhHHHHHHHHHHHHHHHHHHHHhcCC
Q 026774 152 ETVVSTKHIALAVNEELDLHT-RLIDDLDQHVDVTDSRLRRVQKNLAILNKRTKG 205 (233)
Q Consensus 152 ~~v~~l~~~~~~i~~ev~~Q~-~~ld~i~~~vd~~~~~l~~~~~~l~~~~~~~~~ 205 (233)
..-..+..-|..+..-|+... .+|+.|+..-......+......+..-+.....
T Consensus 39 ~~~~~I~~~f~~l~~~L~~~e~~ll~~l~~~~~~~~~~l~~q~~~l~~~l~~l~~ 93 (127)
T smart00502 39 DVEAQIKAAFDELRNALNKRKKQLLEDLEEQKENKLKVLEQQLESLTQKQEKLSH 93 (127)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555566666665544 588888888877777777777777766665444
No 227
>PRK09973 putative outer membrane lipoprotein; Provisional
Probab=36.99 E-value=1.4e+02 Score=20.69 Aligned_cols=33 Identities=18% Similarity=0.273 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026774 147 LEKLEETVVSTKHIALAVNEELDLHTRLIDDLD 179 (233)
Q Consensus 147 l~~l~~~v~~l~~~~~~i~~ev~~Q~~~ld~i~ 179 (233)
.+++...+...+.-+..-.+|-..=|+-||+++
T Consensus 40 vdql~~dv~~a~aaa~aAk~EA~RAN~RiDN~~ 72 (85)
T PRK09973 40 IARLEQDMKALRPQIYAAKSEANRANTRLDAQD 72 (85)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHH
Confidence 334444444444444444444444444444433
No 228
>TIGR03142 cytochro_ccmI cytochrome c-type biogenesis protein CcmI. This TPR repeat-containing protein is the CcmI protein (also called CycH) of c-type cytochrome biogenesis. CcmI is thought to act as an apo-cytochrome c chaperone. This model describes the N-terminal region of the protein, Members of this protein family
Probab=36.76 E-value=1.7e+02 Score=21.34 Aligned_cols=20 Identities=25% Similarity=0.477 Sum_probs=11.3
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 026774 210 MCMLLAVIGIVVLVVVIYML 229 (233)
Q Consensus 210 ~~i~~l~i~lv~l~v~i~~~ 229 (233)
+..++++++++++.+.+|..
T Consensus 94 ~~~~~~~~~lp~~a~~lY~~ 113 (117)
T TIGR03142 94 LAALVVVLLLPVLALGLYLK 113 (117)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 33344445566666677764
No 229
>PF06679 DUF1180: Protein of unknown function (DUF1180); InterPro: IPR009565 This entry consists of several hypothetical eukaryotic proteins thought to be membrane proteins. Their function is unknown.
Probab=36.75 E-value=37 Score=26.67 Aligned_cols=13 Identities=15% Similarity=0.600 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHhh
Q 026774 220 VVLVVVIYMLIKY 232 (233)
Q Consensus 220 v~l~v~i~~~~k~ 232 (233)
+..++++||+++.
T Consensus 104 ~s~l~i~yfvir~ 116 (163)
T PF06679_consen 104 LSALAILYFVIRT 116 (163)
T ss_pred HHHHHHHHHHHHH
Confidence 3334445555543
No 230
>PF09604 Potass_KdpF: F subunit of K+-transporting ATPase (Potass_KdpF); InterPro: IPR011726 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. P-ATPases (sometime known as E1-E2 ATPases) (3.6.3.- from EC) are found in bacteria and in a number of eukaryotic plasma membranes and organelles []. P-ATPases function to transport a variety of different compounds, including ions and phospholipids, across a membrane using ATP hydrolysis for energy. There are many different classes of P-ATPases, each of which transports a specific type of ion: H+, Na+, K+, Mg2+, Ca2+, Ag+ and Ag2+, Zn2+, Co2+, Pb2+, Ni2+, Cd2+, Cu+ and Cu2+. P-ATPases can be composed of one or two polypeptides, and can usually assume two main conformations called E1 and E2. This entry represents the F subunit (KdpF) of a P-type K+-translocating ATPase (Kdp). KdpF is a very small integral membrane peptide. The kdpABC operon of Escherichia coli codes for the high affinity K+-translocating Kdp complex []. KdpF is found upstream of the KdpA subunit (IPR004623 from INTERPRO). Because of its very small size and highly hydrophobic character, it is sometimes missed in genome annotation. More information about this protein can be found at Protein of the Month: ATP Synthases [].
Probab=36.72 E-value=66 Score=16.88 Aligned_cols=12 Identities=25% Similarity=0.658 Sum_probs=5.1
Q ss_pred HHHHHHHHHHHH
Q 026774 218 GIVVLVVVIYML 229 (233)
Q Consensus 218 ~lv~l~v~i~~~ 229 (233)
++.+++.++|-+
T Consensus 8 ~~~L~~YL~~aL 19 (25)
T PF09604_consen 8 AVALFVYLFYAL 19 (25)
T ss_pred HHHHHHHHHHHH
Confidence 334444444444
No 231
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=36.31 E-value=2.7e+02 Score=23.63 Aligned_cols=51 Identities=10% Similarity=0.225 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHH
Q 026774 144 DEGLEKLEETVVSTKHIALAVNEELDLHTRLIDDLDQHVDVTDSRLRRVQK 194 (233)
Q Consensus 144 d~~l~~l~~~v~~l~~~~~~i~~ev~~Q~~~ld~i~~~vd~~~~~l~~~~~ 194 (233)
+..++....++....--...|..|++.+.+.++.++..+..-.+.++.-..
T Consensus 171 ~k~~~~~~~~l~~~~~~N~~m~kei~~~re~i~el~e~I~~L~~eV~~L~~ 221 (258)
T PF15397_consen 171 EKTQSPMQPALLQRTLENQVMQKEIVQFREEIDELEEEIPQLRAEVEQLQA 221 (258)
T ss_pred HHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555666666666667788899999999999999988777666655433
No 232
>PRK10573 type IV pilin biogenesis protein; Provisional
Probab=36.30 E-value=3.1e+02 Score=24.38 Aligned_cols=12 Identities=8% Similarity=0.094 Sum_probs=5.4
Q ss_pred HHHHHHHHHHHh
Q 026774 191 RVQKNLAILNKR 202 (233)
Q Consensus 191 ~~~~~l~~~~~~ 202 (233)
...+++.+++.+
T Consensus 155 ~~~~~i~~al~Y 166 (399)
T PRK10573 155 QLTKKVKKALRY 166 (399)
T ss_pred HHHHHHHHHHHH
Confidence 344444444443
No 233
>PF05933 Fun_ATP-synt_8: Fungal ATP synthase protein 8 (A6L); InterPro: IPR009230 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. F-ATPases (also known as F1F0-ATPase, or H(+)-transporting two-sector ATPase) (3.6.3.14 from EC) are composed of two linked complexes: the F1 ATPase complex is the catalytic core and is composed of 5 subunits (alpha, beta, gamma, delta, epsilon), while the F0 ATPase complex is the membrane-embedded proton channel that is composed of at least 3 subunits (A-C), nine in mitochondria (A-G, F6, F8). Both the F1 and F0 complexes are rotary motors that are coupled back-to-back. In the F1 complex, the central gamma subunit forms the rotor inside the cylinder made of the alpha(3)beta(3) subunits, while in the F0 complex, the ring-shaped C subunits forms the rotor. The two rotors rotate in opposite directions, but the F0 rotor is usually stronger, using the force from the proton gradient to push the F1 rotor in reverse in order to drive ATP synthesis []. These ATPases can also work in reverse to hydrolyse ATP to create a proton gradient. This entry represents subunit 8 found in the F0 complex of mitochondrial F-ATPases from fungi. This subunit appears to be an integral component of the stator stalk in yeast mitochondrial F-ATPases []. The stator stalk is anchored in the membrane, and acts to prevent futile rotation of the ATPase subunits relative to the rotor during coupled ATP synthesis/hydrolysis. This subunit differs in sequence between fungi, Metazoa (IPR001421 from INTERPRO) and plants (IPR003319 from INTERPRO). More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0015078 hydrogen ion transmembrane transporter activity, 0015986 ATP synthesis coupled proton transport, 0000276 mitochondrial proton-transporting ATP synthase complex, coupling factor F(o)
Probab=36.10 E-value=42 Score=20.64 Aligned_cols=16 Identities=31% Similarity=0.957 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHhh
Q 026774 217 IGIVVLVVVIYMLIKY 232 (233)
Q Consensus 217 i~lv~l~v~i~~~~k~ 232 (233)
.+++++.+++|+.+|+
T Consensus 15 ~~f~~l~il~yl~Sky 30 (48)
T PF05933_consen 15 FGFLILSILLYLFSKY 30 (48)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4455566667777665
No 234
>KOG3287 consensus Membrane trafficking protein, emp24/gp25L/p24 family [Intracellular trafficking, secretion, and vesicular transport]
Probab=35.85 E-value=1.6e+02 Score=24.29 Aligned_cols=17 Identities=24% Similarity=0.452 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHH
Q 026774 143 QDEGLEKLEETVVSTKH 159 (233)
Q Consensus 143 qd~~l~~l~~~v~~l~~ 159 (233)
.|-.++++.++++.++.
T Consensus 151 Ld~kl~di~~~i~~i~~ 167 (236)
T KOG3287|consen 151 LDVKLDDIEDSIGTIKN 167 (236)
T ss_pred hcccHHHHHHHHHHHHH
Confidence 34455666666555543
No 235
>PF13260 DUF4051: Protein of unknown function (DUF4051)
Probab=35.84 E-value=39 Score=20.69 Aligned_cols=10 Identities=60% Similarity=0.946 Sum_probs=4.5
Q ss_pred HHHHHHHHHH
Q 026774 219 IVVLVVVIYM 228 (233)
Q Consensus 219 lv~l~v~i~~ 228 (233)
+|++.++.||
T Consensus 10 li~lv~~gy~ 19 (54)
T PF13260_consen 10 LIVLVVVGYF 19 (54)
T ss_pred HHHHHHHHHH
Confidence 3344445554
No 236
>PF13060 DUF3921: Protein of unknown function (DUF3921)
Probab=35.10 E-value=1.1e+02 Score=18.81 Aligned_cols=36 Identities=17% Similarity=0.231 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHH
Q 026774 156 STKHIALAVNEELDLHTRLIDDLDQHVDVTDSRLRR 191 (233)
Q Consensus 156 ~l~~~~~~i~~ev~~Q~~~ld~i~~~vd~~~~~l~~ 191 (233)
.++.....+|.|++.|+...|.|...-+.--..+..
T Consensus 12 aih~tydelgkei~~~g~~~d~i~kaqeeylsals~ 47 (58)
T PF13060_consen 12 AIHRTYDELGKEIDLQGVIADEIQKAQEEYLSALSH 47 (58)
T ss_pred HHHHhHHHHhHHhhhcchHHHHHHHHHHHHHHHhhH
Confidence 345666778899999999998887665555444433
No 237
>PF10267 Tmemb_cc2: Predicted transmembrane and coiled-coil 2 protein; InterPro: IPR019394 This family of transmembrane coiled-coil containing proteins is conserved from worms to humans. Its function is unknown.
Probab=35.09 E-value=3.5e+02 Score=24.54 Aligned_cols=54 Identities=13% Similarity=0.268 Sum_probs=39.2
Q ss_pred HHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHhHhHHHHHHHHHHHH
Q 026774 140 MREQ-DEGLEKLEETVVSTKHIALAVNEELDLHT-RLIDDLDQHVDVTDSRLRRVQ 193 (233)
Q Consensus 140 ~~~q-d~~l~~l~~~v~~l~~~~~~i~~ev~~Q~-~~ld~i~~~vd~~~~~l~~~~ 193 (233)
+++| ++.++--..-|..||+--..|-+-++.|. +-..+|.+.|+..+.+|.+--
T Consensus 263 LEeqlNd~~elHq~Ei~~LKqeLa~~EEK~~Yqs~eRaRdi~E~~Es~qtRisklE 318 (395)
T PF10267_consen 263 LEEQLNDLTELHQNEIYNLKQELASMEEKMAYQSYERARDIWEVMESCQTRISKLE 318 (395)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 4433 44444445567888888888888888775 488899999999998887654
No 238
>PF00558 Vpu: Vpu protein; InterPro: IPR008187 The Human immunodeficiency virus 1 (HIV-1) Vpu protein acts in the degradation of CD4 in the endoplasmic reticulum and in the enhancement of virion release from the plasma membrane of infected cells [].; GO: 0019076 release of virus from host; PDB: 2JPX_A 1PI8_A 2GOH_A 2GOF_A 1PI7_A 1PJE_A 1VPU_A 2K7Y_A.
Probab=35.05 E-value=59 Score=22.37 Aligned_cols=9 Identities=11% Similarity=0.811 Sum_probs=4.0
Q ss_pred HHHHHHHHH
Q 026774 221 VLVVVIYML 229 (233)
Q Consensus 221 ~l~v~i~~~ 229 (233)
++++++|..
T Consensus 17 iiaIvvW~i 25 (81)
T PF00558_consen 17 IIAIVVWTI 25 (81)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 334455443
No 239
>PF02203 TarH: Tar ligand binding domain homologue; InterPro: IPR003122 Methyl-accepting chemotaxis proteins (MCPs) are a family of bacterial receptors that mediate chemotaxis to diverse signals, responding to changes in the concentration of attractants and repellents in the environment by altering swimming behaviour []. Environmental diversity gives rise to diversity in bacterial signalling receptors, and consequently there are many genes encoding MCPs []. For example, there are four well-characterised MCPs found in Escherichia coli: Tar (taxis towards aspartate and maltose, away from nickel and cobalt), Tsr (taxis towards serine, away from leucine, indole and weak acids), Trg (taxis towards galactose and ribose) and Tap (taxis towards dipeptides). MCPs share similar topology and signalling mechanisms. MCPs either bind ligands directly or interact with ligand-binding proteins, transducing the signal to downstream signalling proteins in the cytoplasm. MCPs undergo two covalent modifications: deamidation and reversible methylation at a number of glutamate residues. Attractants increase the level of methylation, while repellents decrease it. The methyl groups are added by the methyl-transferase cheR and are removed by the methylesterase cheB. Most MCPs are homodimers that contain the following organisation: an N-terminal signal sequence that acts as a transmembrane domain in the mature protein; a poorly-conserved periplasmic receptor (ligand-binding) domain; a second transmembrane domain; and a highly-conserved C-terminal cytoplasmic domain that interacts with downstream signalling components. The C-terminal domain contains the glycosylated glutamate residues. This entry represents the ligand-binding domain found in a number of methyl-accepting chemotaxis receptors.; GO: 0004888 transmembrane signaling receptor activity, 0006935 chemotaxis, 0007165 signal transduction, 0016020 membrane; PDB: 2ASR_A 3ATP_A 2D4U_A 2LIG_A 1VLS_A 1LIH_A 1WAT_B 1VLT_B 1WAS_A 1JMW_A.
Probab=34.88 E-value=2e+02 Score=21.71 Aligned_cols=47 Identities=6% Similarity=0.050 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHhhHhhhCCCCCCchhHHHHHHHHHHHHHHHHhHHHH
Q 026774 13 NEAIKLADDINGMISERSSMPASGPESQRHASAIRRKITILGTRLDSL 60 (233)
Q Consensus 13 ~ev~~~l~~i~~~i~~r~~~~~~~~e~~~~~~~Ir~~l~~l~~~l~~L 60 (233)
.++...+...+..+.+.-... ..+...+.-..++..+......+..+
T Consensus 55 ~~~~~~l~~~r~~l~~~~~~~-~~~~~~~~l~~~~~~l~~~~~~~~~~ 101 (171)
T PF02203_consen 55 ADASSNLLQARLALNRALLQG-DSPDAAELLARAEQNLEQAEQAFDAF 101 (171)
T ss_dssp HHHHHHHHHHHHHHHHHHHCC-CTSCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhc-ccccHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555555554422211 11222333344444455555444444
No 240
>PHA03093 EEV glycoprotein; Provisional
Probab=34.52 E-value=35 Score=27.22 Aligned_cols=17 Identities=29% Similarity=0.876 Sum_probs=6.9
Q ss_pred chhHHH-HHHHHHHHHHH
Q 026774 207 CTCMCM-LLAVIGIVVLV 223 (233)
Q Consensus 207 ~~~~~i-~~l~i~lv~l~ 223 (233)
|.-+|+ +..+|.||.|+
T Consensus 34 ~i~i~~RisiiiSIlsL~ 51 (185)
T PHA03093 34 CIGICIRISIIISILSLI 51 (185)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 443344 33344444443
No 241
>PRK01026 tetrahydromethanopterin S-methyltransferase subunit G; Provisional
Probab=34.49 E-value=1.5e+02 Score=20.16 Aligned_cols=27 Identities=4% Similarity=0.175 Sum_probs=18.3
Q ss_pred HHHhHhHHHHHHHHHHHHHHHHHHHHh
Q 026774 176 DDLDQHVDVTDSRLRRVQKNLAILNKR 202 (233)
Q Consensus 176 d~i~~~vd~~~~~l~~~~~~l~~~~~~ 202 (233)
.++....|....+++.++.++-.-..+
T Consensus 18 ~~i~~rLD~iEeKVEftn~Ei~Qr~Gk 44 (77)
T PRK01026 18 KEIQKRLDEIEEKVEFTNAEIFQRIGK 44 (77)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 345566677888888888877644433
No 242
>PF03408 Foamy_virus_ENV: Foamy virus envelope protein ; InterPro: IPR005070 Expression of the envelope (Env) glycoprotein is essential for viral particle egress. This feature is unique to the Spumavirinae, a subclass of the Retroviridae. ; GO: 0019031 viral envelope
Probab=34.42 E-value=58 Score=32.04 Aligned_cols=32 Identities=16% Similarity=0.180 Sum_probs=13.7
Q ss_pred HHHHhcCCCchhHHHHHHHHHHHHHHHHHHHH
Q 026774 198 ILNKRTKGGCTCMCMLLAVIGIVVLVVVIYML 229 (233)
Q Consensus 198 ~~~~~~~~~~~~~~i~~l~i~lv~l~v~i~~~ 229 (233)
......++|..+|+++++++++|+++..+..+
T Consensus 52 Y~~CATSTRim~Wilf~cvll~Iv~iscfvti 83 (981)
T PF03408_consen 52 YLCCATSTRIMAWILFVCVLLSIVLISCFVTI 83 (981)
T ss_pred HHHHcchhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444444444444443344433
No 243
>PF14523 Syntaxin_2: Syntaxin-like protein; PDB: 2DNX_A.
Probab=34.39 E-value=1.6e+02 Score=20.44 Aligned_cols=55 Identities=16% Similarity=0.247 Sum_probs=25.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHH
Q 026774 146 GLEKLEETVVSTKHIALAVNEELDLHTRLIDDLDQHVDVTDSRLRRVQKNLAILNK 201 (233)
Q Consensus 146 ~l~~l~~~v~~l~~~~~~i~~ev~~Q~~~ld~i~~~vd~~~~~l~~~~~~l~~~~~ 201 (233)
.|..|...|..|..+...||.- .+-.++-+.|..-+..+...++.....++.+..
T Consensus 4 ~l~~in~~v~~l~k~~~~lGt~-~Ds~~lR~~i~~~~~~~~~l~k~~~~~l~~l~~ 58 (102)
T PF14523_consen 4 NLFKINQNVSQLEKLVNQLGTP-RDSQELREKIHQLIQKTNQLIKEISELLKKLNS 58 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHH-SS-S--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhCCc-cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555555533 223334444545555555555555554444444
No 244
>TIGR01478 STEVOR variant surface antigen, stevor family. This model represents the stevor branch of the rifin/stevor family (pfam02009) of predicted variant surface antigens as found in Plasmodium falciparum. This model is based on a set of stevor sequences kindly provided by Matt Berriman from the Sanger Center. This is a global model and assesses a penalty for incomplete sequence. Additional fragmentary sequences may be found with the fragment model and a cutoff of 8 bits.
Probab=34.02 E-value=50 Score=28.34 Aligned_cols=17 Identities=24% Similarity=0.206 Sum_probs=10.5
Q ss_pred HHHhHHHHHHHHhcCCC
Q 026774 53 LGTRLDSLQSLLSKLPG 69 (233)
Q Consensus 53 l~~~l~~L~~~l~~~~~ 69 (233)
..+..+++++.+++...
T Consensus 78 T~~~f~e~~e~~~k~~~ 94 (295)
T TIGR01478 78 THDPYEQLQELVEKNRT 94 (295)
T ss_pred hcchHHHHHHHHHhcCC
Confidence 44456777777765543
No 245
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=33.93 E-value=44 Score=29.94 Aligned_cols=15 Identities=7% Similarity=0.115 Sum_probs=5.9
Q ss_pred HHHHHHHHHHHHHHh
Q 026774 217 IGIVVLVVVIYMLIK 231 (233)
Q Consensus 217 i~lv~l~v~i~~~~k 231 (233)
|+++++++++|+++.
T Consensus 49 ~~~~~~~~~~~~l~~ 63 (409)
T TIGR00540 49 IIALAIIFAFEWGLR 63 (409)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333444443
No 246
>PRK09039 hypothetical protein; Validated
Probab=33.76 E-value=3.3e+02 Score=23.97 Aligned_cols=66 Identities=15% Similarity=0.202 Sum_probs=42.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHH-HHHHHH
Q 026774 136 QRQIMREQDEGLEKLEETVVSTKHIALAVNEELDLHTRLIDDLDQHVDVTDSRLRRVQKN-LAILNK 201 (233)
Q Consensus 136 q~~~~~~qd~~l~~l~~~v~~l~~~~~~i~~ev~~Q~~~ld~i~~~vd~~~~~l~~~~~~-l~~~~~ 201 (233)
++....+...++..|..-|..|+..-..+..+|+.......+....++.....|+.+..+ +..+.+
T Consensus 128 ~k~~~se~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~~~L~~a~~~~~~~l~~ 194 (343)
T PRK09039 128 EKQVSARALAQVELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADLGRRLNVALAQRVQELNR 194 (343)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555666777777777777767777777777777777777777777777766533 444443
No 247
>PF06363 Picorna_P3A: Picornaviridae P3A protein; InterPro: IPR009419 The viral polyprotein of parechoviruses contains: coat protein VP0 (P1AB); coat protein VP3 (P1C); coat protein VP1 (P1D); picornain 2A (3.4.22.29 from EC, core protein P2A); core protein P2B; core protein P2C; core protein P3A; genome-linked protein VPg (P3B); picornain 3C (3.4.22.28 from EC, MEROPS peptidase subfamily 3CF: parechovirus picornain 3C (P3C))[]. This entry consists of the parechovirus P3A protein. P3A has been identified as a genome-linked protein (VPg), which is involved in replication [].; GO: 0019012 virion
Probab=33.47 E-value=1.7e+02 Score=20.59 Aligned_cols=46 Identities=24% Similarity=0.343 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHH
Q 026774 182 VDVTDSRLRRVQKNLAILNKRTKGGCTCMCMLLAVIGIVVLVVVIY 227 (233)
Q Consensus 182 vd~~~~~l~~~~~~l~~~~~~~~~~~~~~~i~~l~i~lv~l~v~i~ 227 (233)
-+++-+-+.+-.+++..++.+++.+......+..+|.|+.|...+|
T Consensus 47 ~~kv~~W~~~k~k~~~~FV~RNk~W~T~~S~~tS~isIL~LV~~~~ 92 (100)
T PF06363_consen 47 CDKVKSWVKNKMKSMLSFVERNKAWFTVVSAVTSFISILLLVTKIF 92 (100)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcchHhhHHHHHHHHHHHHHHHHHHH
Confidence 3444445555667777777776552222223334444444444444
No 248
>KOG3838 consensus Mannose lectin ERGIC-53, involved in glycoprotein traffic [Intracellular trafficking, secretion, and vesicular transport]
Probab=33.41 E-value=3.7e+02 Score=24.41 Aligned_cols=20 Identities=15% Similarity=0.242 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 026774 211 CMLLAVIGIVVLVVVIYMLI 230 (233)
Q Consensus 211 ~i~~l~i~lv~l~v~i~~~~ 230 (233)
+||++++++=.++|++|.+.
T Consensus 466 tiFl~~~viQtvl~~~yv~f 485 (497)
T KOG3838|consen 466 TIFLFYLVIQTVLFFGYVHF 485 (497)
T ss_pred hhhhhHHHHHhhhheeEEEE
Confidence 45555555555666666543
No 249
>PF10046 BLOC1_2: Biogenesis of lysosome-related organelles complex-1 subunit 2 ; InterPro: IPR019269 This entry represents a family of proteins that play a role in cellular proliferation, as well as in the biogenesis of specialised organelles of the endosomal-lysosomal system [].
Probab=33.24 E-value=1.8e+02 Score=20.59 Aligned_cols=54 Identities=17% Similarity=0.196 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHH
Q 026774 142 EQDEGLEKLEETVVSTKHIALAVNEELDLHTRLIDDLDQHVDVTDSRLRRVQKNLAIL 199 (233)
Q Consensus 142 ~qd~~l~~l~~~v~~l~~~~~~i~~ev~~Q~~~ld~i~~~vd~~~~~l~~~~~~l~~~ 199 (233)
+.++....|...+..+++.. .++..+-..||.|+..|+.-..-+..-..-.+++
T Consensus 39 ~~~~~~~~l~~~~~~l~~k~----~~l~~~l~~Id~Ie~~V~~LE~~v~~LD~ysk~L 92 (99)
T PF10046_consen 39 KMKDIAAGLEKNLEDLNQKY----EELQPYLQQIDQIEEQVTELEQTVYELDEYSKEL 92 (99)
T ss_pred HHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44455566666666666544 4577777888888888876665555444444433
No 250
>PF06193 Orthopox_A5L: Orthopoxvirus A5L protein-like; InterPro: IPR010396 This family consists of several Orthopoxvirus A5L proteins. The vaccinia virus WR A5L open reading frame (corresponding to open reading frame A4L in vaccinia virus Copenhagen) encodes an immunodominant late protein found in the core of the vaccinia virion. The A5 protein appears to be required for the immature virion to form the brick-shaped intracellular mature virion [].
Probab=33.20 E-value=2.4e+02 Score=22.16 Aligned_cols=53 Identities=11% Similarity=0.152 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHH
Q 026774 149 KLEETVVSTKHIALAVNEELDLHTRLIDDLDQHVDVTDSRLRRVQKNLAILNK 201 (233)
Q Consensus 149 ~l~~~v~~l~~~~~~i~~ev~~Q~~~ld~i~~~vd~~~~~l~~~~~~l~~~~~ 201 (233)
.+...+.+++.+...+...-.+.+.++.+|...=+.|...++.-++.|.+-+.
T Consensus 108 t~~~IikEl~dik~~t~~LQ~es~~Lv~DIs~AKe~T~~AIn~IM~~L~k~fq 160 (166)
T PF06193_consen 108 TKDNIIKELNDIKDETSSLQAESNSLVTDISDAKESTQDAINDIMKDLSKKFQ 160 (166)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 44445555667777777777788889999999888888888888877776554
No 251
>COG4064 MtrG Tetrahydromethanopterin S-methyltransferase, subunit G [Coenzyme metabolism]
Probab=33.01 E-value=1.5e+02 Score=19.73 Aligned_cols=24 Identities=8% Similarity=0.470 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHhHhHHHHHHHH
Q 026774 166 EELDLHTRLIDDLDQHVDVTDSRL 189 (233)
Q Consensus 166 ~ev~~Q~~~ld~i~~~vd~~~~~l 189 (233)
++..+=++-||+|+..|+.+...+
T Consensus 15 ~dfne~~kRLdeieekvef~~~Ev 38 (75)
T COG4064 15 DDFNEIHKRLDEIEEKVEFVNGEV 38 (75)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHH
Confidence 345555677888888887776655
No 252
>PF03915 AIP3: Actin interacting protein 3; InterPro: IPR022782 This entry represents a domain found in yeast actin interacting protein 3 and bud site selection protein 6. In these proteins it is typically found towards the C terminus. It is also found in metazoan proteins, such as the mouse enhancer trap locus 4 protein. ; PDB: 3ONX_B 3OKQ_A.
Probab=32.45 E-value=2.9e+02 Score=25.30 Aligned_cols=56 Identities=18% Similarity=0.241 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHhHHHHHHHHhcCCC-----CCCCCHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 026774 45 AIRRKITILGTRLDSLQSLLSKLPG-----KQPISEKEMNRRKDMLANLRSKVNQMASTLN 100 (233)
Q Consensus 45 ~Ir~~l~~l~~~l~~L~~~l~~~~~-----~~~~~~~E~~~R~~~~~~l~~~l~~l~~~~~ 100 (233)
.+......+-..|.+|++.++.+.. +...++..+..=..-+..+...+..+...+.
T Consensus 210 ~L~~~sd~Ll~kVdDLQD~VE~LRkDV~~RgvRp~~~qle~v~kdi~~a~~~L~~m~~~i~ 270 (424)
T PF03915_consen 210 KLSEESDRLLTKVDDLQDLVEDLRKDVVQRGVRPSPKQLETVAKDISRASKELKKMKEYIK 270 (424)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555666666666643321 1112344444444445555555555555543
No 253
>KOG0859 consensus Synaptobrevin/VAMP-like protein [Intracellular trafficking, secretion, and vesicular transport]
Probab=32.38 E-value=91 Score=25.33 Aligned_cols=16 Identities=13% Similarity=0.258 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHH
Q 026774 145 EGLEKLEETVVSTKHI 160 (233)
Q Consensus 145 ~~l~~l~~~v~~l~~~ 160 (233)
-.+|.|+..=+...++
T Consensus 122 p~id~lskvkaqv~ev 137 (217)
T KOG0859|consen 122 PEISKLAKVKAQVTEV 137 (217)
T ss_pred cchhHHHHHHHHHHHH
Confidence 3466666555444444
No 254
>KOG4606 consensus Uncharacterized conserved protein [Function unknown]
Probab=32.37 E-value=1.8e+02 Score=21.21 Aligned_cols=38 Identities=8% Similarity=0.078 Sum_probs=26.8
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHH
Q 026774 184 VTDSRLRRVQKNLAILNKRTKGGCTCMCMLLAVIGIVV 221 (233)
Q Consensus 184 ~~~~~l~~~~~~l~~~~~~~~~~~~~~~i~~l~i~lv~ 221 (233)
.+-+.|+.-.+|+-.++.+.+..+.-|-|++.++.+.+
T Consensus 5 ~aceDLKaFErRLTEvi~~~~Pst~RWRi~lvi~svc~ 42 (126)
T KOG4606|consen 5 EACEDLKAFERRLTEVITYMGPSTGRWRIALVIFSVCT 42 (126)
T ss_pred hHHHHHHHHHHHHHHHhhhcCCCccchhhHHHHHHHHH
Confidence 45677888889999999998887776765544433333
No 255
>PTZ00370 STEVOR; Provisional
Probab=32.20 E-value=55 Score=28.12 Aligned_cols=16 Identities=13% Similarity=0.156 Sum_probs=10.0
Q ss_pred HHHhHHHHHHHHhcCC
Q 026774 53 LGTRLDSLQSLLSKLP 68 (233)
Q Consensus 53 l~~~l~~L~~~l~~~~ 68 (233)
-.+..+++++.+++..
T Consensus 77 T~~~f~e~~e~~~k~~ 92 (296)
T PTZ00370 77 THDPYEQLKEVVEKNG 92 (296)
T ss_pred hcchHHHHHHHHHhcC
Confidence 4445677777776554
No 256
>PF06422 PDR_CDR: CDR ABC transporter; InterPro: IPR010929 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). In yeast, the PDR and CDR ABC transporters display extensive sequence homology, and confer resistance to several anti-fungal compounds by actively transporting their substrates out of the cell. These transporters have two homologous halves, each with an N-terminal intracellular hydrophilic region that contains an ATP-binding site, followed by a C-terminal membrane-associated region containing six transmembrane segments []. This entry represents a domain of the PDR/CDR ABC transporter comprising extracellular loop 3, transmembrane segment 6 and a linker region.; GO: 0005524 ATP binding, 0042626 ATPase activity, coupled to transmembrane movement of substances, 0006810 transport, 0016021 integral to membrane
Probab=32.18 E-value=62 Score=23.12 Aligned_cols=7 Identities=0% Similarity=-0.088 Sum_probs=2.9
Q ss_pred CchhHHH
Q 026774 206 GCTCMCM 212 (233)
Q Consensus 206 ~~~~~~i 212 (233)
.|.-+.|
T Consensus 48 ~WRN~GI 54 (103)
T PF06422_consen 48 RWRNFGI 54 (103)
T ss_pred hhhhHHH
Confidence 3444433
No 257
>TIGR02120 GspF general secretion pathway protein F. This membrane protein is a component of the terminal branch complex of the general secretion pathway (GSP), also known as the"Type II" secretion pathway. The GSP transports proteins (generally virulence-associated cell wall hydrolases) across the outer membrase of the bacterial cell. Transport across the inner membrane is often, but not exclusively handled by the Sec system. This model was constructed from the broader subfamily model, pfam00482 which includes components of pilin complexes (PilC) as well as other related genes. GspF is nearly always gene clustered with other GSP subunits. Some genes from Xylella and Xanthomonas strains score below the trusted cutoff due to excessive divergence from the family such that a sequence from Deinococcus which does not appear to be GspF scores higher.
Probab=32.09 E-value=3.6e+02 Score=23.94 Aligned_cols=13 Identities=23% Similarity=0.253 Sum_probs=5.0
Q ss_pred HHhHhHHHHHHHH
Q 026774 177 DLDQHVDVTDSRL 189 (233)
Q Consensus 177 ~i~~~vd~~~~~l 189 (233)
++++.+.+....+
T Consensus 140 ~L~~~L~~~a~~~ 152 (399)
T TIGR02120 140 ALDAVLERLADYL 152 (399)
T ss_pred CHHHHHHHHHHHH
Confidence 3333333333333
No 258
>COG5481 Uncharacterized conserved small protein containing a coiled-coil domain [Function unknown]
Probab=31.81 E-value=1.4e+02 Score=19.15 Aligned_cols=56 Identities=13% Similarity=0.237 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHHhHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026774 43 ASAIRRKITILGTRLDSLQSLLSKLPGKQPISEKEMNRRKDMLANLRSKVNQMASTL 99 (233)
Q Consensus 43 ~~~Ir~~l~~l~~~l~~L~~~l~~~~~~~~~~~~E~~~R~~~~~~l~~~l~~l~~~~ 99 (233)
.++||..+..++++=.+++..+...-. ++.+.--+++-+.---.++.++..+...+
T Consensus 6 qaeirl~~arLrqeH~D~DaaInAmi~-~~cD~L~iqRmKkKKLAlKDki~~lED~i 61 (67)
T COG5481 6 QAEIRLTLARLRQEHADFDAAINAMIA-TGCDALRIQRMKKKKLALKDKITKLEDQI 61 (67)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHH-hCCcHHHHHHHHHHHHhHHHHHHHHHHhh
Confidence 367899999999999999988876543 34555556554554556677776666543
No 259
>COG3190 FliO Flagellar biogenesis protein [Cell motility and secretion]
Probab=31.76 E-value=70 Score=24.35 Aligned_cols=18 Identities=0% Similarity=0.370 Sum_probs=10.9
Q ss_pred HHHHHHHHHHHHHHHHhh
Q 026774 215 AVIGIVVLVVVIYMLIKY 232 (233)
Q Consensus 215 l~i~lv~l~v~i~~~~k~ 232 (233)
|+.+|.++++++|.+-||
T Consensus 31 L~~iL~lil~~~wl~kr~ 48 (137)
T COG3190 31 LILILALILFLAWLVKRL 48 (137)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 444555556677777665
No 260
>PHA02673 ORF109 EEV glycoprotein; Provisional
Probab=31.69 E-value=88 Score=24.38 Aligned_cols=19 Identities=32% Similarity=0.579 Sum_probs=7.8
Q ss_pred chhHHH-HHHHHHHHHHHHH
Q 026774 207 CTCMCM-LLAVIGIVVLVVV 225 (233)
Q Consensus 207 ~~~~~i-~~l~i~lv~l~v~ 225 (233)
+.-+|+ ++.+|.|++|+.+
T Consensus 31 ~i~l~~Ri~~~iSIisL~~l 50 (161)
T PHA02673 31 YIKLFFRLMAAIAIIVLAIL 50 (161)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 333343 4444444444433
No 261
>TIGR02230 ATPase_gene1 F0F1-ATPase subunit, putative. This model represents a protein found encoded in F1F0-ATPase operons in several genomes, including Methanosarcina barkeri (archaeal) and Chlorobium tepidum (bacterial). It is a small protein (about 100 amino acids) with long hydrophic stretches and is presumed to be a subunit of the enzyme.
Probab=31.66 E-value=1.5e+02 Score=21.24 Aligned_cols=24 Identities=8% Similarity=0.257 Sum_probs=13.7
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHH
Q 026774 207 CTCMCMLLAVIGIVVLVVVIYMLI 230 (233)
Q Consensus 207 ~~~~~i~~l~i~lv~l~v~i~~~~ 230 (233)
..+|++.++++.+++-++-+|+.+
T Consensus 73 ~~~~tl~~lllGv~~G~~n~w~wi 96 (100)
T TIGR02230 73 PFSWTLTMLIVGVVIGCLNAWHWV 96 (100)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHH
Confidence 335666666666666665555544
No 262
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=31.37 E-value=2.6e+02 Score=23.04 Aligned_cols=63 Identities=25% Similarity=0.353 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHh
Q 026774 140 MREQDEGLEKLEETVVSTKHIALAVNEELDLHTRLIDDLDQHVDVTDSRLRRVQKNLAILNKR 202 (233)
Q Consensus 140 ~~~qd~~l~~l~~~v~~l~~~~~~i~~ev~~Q~~~ld~i~~~vd~~~~~l~~~~~~l~~~~~~ 202 (233)
++.-...+..+...+.....-+...-.++..-+.-|..++..++.+..++..+..++..+-+.
T Consensus 10 ld~~~~~~~~~~~~l~~~~~~~~~aE~e~~~l~rri~~lE~~le~~eerL~~~~~kL~~~e~~ 72 (237)
T PF00261_consen 10 LDEAEERLEEAEEKLKEAEKRAEKAEAEVASLQRRIQLLEEELERAEERLEEATEKLEEAEKR 72 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 344445566666666667777777777888888888888888888888887777777766554
No 263
>PRK11486 flagellar biosynthesis protein FliO; Provisional
Probab=31.21 E-value=82 Score=23.54 Aligned_cols=14 Identities=36% Similarity=0.693 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHHh
Q 026774 218 GIVVLVVVIYMLIK 231 (233)
Q Consensus 218 ~lv~l~v~i~~~~k 231 (233)
+++.++++++|++|
T Consensus 27 lVl~lI~~~aWLlk 40 (124)
T PRK11486 27 GIIALILAAAWLVK 40 (124)
T ss_pred HHHHHHHHHHHHHH
Confidence 34445555556665
No 264
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=31.12 E-value=48 Score=29.77 Aligned_cols=23 Identities=30% Similarity=0.478 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhC
Q 026774 211 CMLLAVIGIVVLVVVIYMLIKYL 233 (233)
Q Consensus 211 ~i~~l~i~lv~l~v~i~~~~k~~ 233 (233)
-+..++|+++++++++|++-++|
T Consensus 40 Sl~~lv~~~ii~lvv~~~l~~~l 62 (400)
T COG3071 40 SLTTLVIFLIIALVVLYLLEWLL 62 (400)
T ss_pred eHHHHHHHHHHHHHHHHHHHHHH
Confidence 45567777778887888776653
No 265
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=31.03 E-value=6.1e+02 Score=26.16 Aligned_cols=64 Identities=17% Similarity=0.229 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHhcCC
Q 026774 142 EQDEGLEKLEETVVSTKHIALAVNEELDLHTRLIDDLDQHVDVTDSRLRRVQKNLAILNKRTKG 205 (233)
Q Consensus 142 ~qd~~l~~l~~~v~~l~~~~~~i~~ev~~Q~~~ld~i~~~vd~~~~~l~~~~~~l~~~~~~~~~ 205 (233)
....++..++..+..|+.--.++..++..=.+=.+.+..........+..-+..|+.+-+..++
T Consensus 405 ~L~~evek~e~~~~~L~~e~~~~~~~~~~~~ee~~~i~~~i~~l~k~i~~~~~~l~~lk~~k~d 468 (1074)
T KOG0250|consen 405 QLKKEVEKLEEQINSLREELNEVKEKAKEEEEEKEHIEGEILQLRKKIENISEELKDLKKTKTD 468 (1074)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 3345566666677777777777777777777777777777777777777778888877776554
No 266
>PHA03231 glycoprotein BALF4; Provisional
Probab=30.76 E-value=2.1e+02 Score=28.53 Aligned_cols=21 Identities=19% Similarity=-0.143 Sum_probs=14.1
Q ss_pred cHHHHHHHHHHHHHHHH-HhhH
Q 026774 7 SWIKEYNEAIKLADDIN-GMIS 27 (233)
Q Consensus 7 ~~~~~~~ev~~~l~~i~-~~i~ 27 (233)
.+..+.+++.+.++++- ..++
T Consensus 333 ~~~Cv~~~a~~~i~~if~~kyN 354 (829)
T PHA03231 333 LGDCVKDEANETIDRIFRKKYN 354 (829)
T ss_pred cccChhHHHHHHHHHHHHHHhh
Confidence 36777788887777764 5544
No 267
>TIGR02976 phageshock_pspB phage shock protein B. This model describes the PspB protein of the psp (phage shock protein) operon, as found in Escherichia coli and many related species. Expression of a phage protein called secretin protein IV, and a number of other stresses including ethanol, heat shock, and defects in protein secretion trigger sigma-54-dependent expression of the phage shock regulon. PspB is both a regulator and an effector protein of the phage shock response.
Probab=30.46 E-value=93 Score=21.04 Aligned_cols=8 Identities=0% Similarity=0.592 Sum_probs=3.4
Q ss_pred HHHHHHHh
Q 026774 224 VVIYMLIK 231 (233)
Q Consensus 224 v~i~~~~k 231 (233)
..+|.+..
T Consensus 18 ap~wl~lH 25 (75)
T TIGR02976 18 APLWLILH 25 (75)
T ss_pred HHHHHHHH
Confidence 34444443
No 268
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=30.21 E-value=56 Score=29.16 Aligned_cols=6 Identities=33% Similarity=0.401 Sum_probs=2.3
Q ss_pred HHHHHH
Q 026774 225 VIYMLI 230 (233)
Q Consensus 225 ~i~~~~ 230 (233)
++++++
T Consensus 57 ~~~~~~ 62 (398)
T PRK10747 57 AIEWLL 62 (398)
T ss_pred HHHHHH
Confidence 333333
No 269
>PF13124 DUF3963: Protein of unknown function (DUF3963)
Probab=30.17 E-value=59 Score=18.63 Aligned_cols=7 Identities=43% Similarity=0.937 Sum_probs=2.8
Q ss_pred HHHHHHH
Q 026774 210 MCMLLAV 216 (233)
Q Consensus 210 ~~i~~l~ 216 (233)
||..+++
T Consensus 25 ~cfal~v 31 (40)
T PF13124_consen 25 FCFALLV 31 (40)
T ss_pred HHHHHHH
Confidence 3444433
No 270
>KOG4812 consensus Golgi-associated protein/Nedd4 WW domain-binding protein [General function prediction only]
Probab=30.14 E-value=64 Score=26.98 Aligned_cols=26 Identities=8% Similarity=0.073 Sum_probs=17.1
Q ss_pred CchhHHHHHHHHHHHHHHHHHHHHHh
Q 026774 206 GCTCMCMLLAVIGIVVLVVVIYMLIK 231 (233)
Q Consensus 206 ~~~~~~i~~l~i~lv~l~v~i~~~~k 231 (233)
.|.||++++|=.+|++..++-|+-+|
T Consensus 223 ~wLwwi~~vlG~ll~lr~~i~YikVr 248 (262)
T KOG4812|consen 223 YWLWWIFLVLGLLLFLRGFINYIKVR 248 (262)
T ss_pred hHHHHHHHHHHHHHHHHHHHhHHHHh
Confidence 57777766665556666667776665
No 271
>PF06120 Phage_HK97_TLTM: Tail length tape measure protein; InterPro: IPR009302 This entry consists of the tail length tape measure protein from Bacteriophage HK97 and related sequences from Escherichia coli (strain K12).
Probab=29.93 E-value=3.7e+02 Score=23.34 Aligned_cols=67 Identities=22% Similarity=0.289 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHH
Q 026774 132 LVGFQRQIMREQDEGLEKLEETVVSTKHIAL--------AVNEELDLHTRLIDDLDQHVDVTDSRLRRVQKNLAI 198 (233)
Q Consensus 132 ~~~~q~~~~~~qd~~l~~l~~~v~~l~~~~~--------~i~~ev~~Q~~~ld~i~~~vd~~~~~l~~~~~~l~~ 198 (233)
++|.+++--++--+.-+.|.+....++.|+. ...+.+..|++.|+++...++.....+..-+..+..
T Consensus 39 ~yQ~~EQAr~~A~~fA~~ld~~~~kl~~Ms~~ql~~~~~k~~~si~~q~~~i~~l~~~i~~l~~~i~~y~~~~~~ 113 (301)
T PF06120_consen 39 FYQNAEQARQEAIEFADSLDELKEKLKEMSSTQLRANIAKAEESIAAQKRAIEDLQKKIDSLKDQIKNYQQQLAE 113 (301)
T ss_pred HHHHHHHHHHHHHHHHHhhHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
No 272
>PF04835 Pox_A9: A9 protein conserved region; InterPro: IPR006920 This entry represents a family of Chordopoxvirus A9 proteins. Chordopoxvirus belongs to the family Poxviridae and is the cause of vertebrate infections [].
Probab=29.84 E-value=1e+02 Score=19.36 Aligned_cols=17 Identities=12% Similarity=0.405 Sum_probs=7.4
Q ss_pred HHHHHHHHHHHHHHHHH
Q 026774 213 LLAVIGIVVLVVVIYML 229 (233)
Q Consensus 213 ~~l~i~lv~l~v~i~~~ 229 (233)
++..|..++++++++++
T Consensus 30 vismimylilGi~L~yi 46 (54)
T PF04835_consen 30 VISMIMYLILGIALIYI 46 (54)
T ss_pred HHHHHHHHHHHHHHhhh
Confidence 33334444444444444
No 273
>PF06837 Fijivirus_P9-2: Fijivirus P9-2 protein; InterPro: IPR009650 This family consists of several Fijivirus specific P9-2 proteins from Rice black streaked dwarf virus (RBSDV) and Fiji disease virus. The function of this family is unknown.
Probab=29.75 E-value=73 Score=25.56 Aligned_cols=13 Identities=23% Similarity=0.353 Sum_probs=6.1
Q ss_pred HHHHHhHhHHHHH
Q 026774 174 LIDDLDQHVDVTD 186 (233)
Q Consensus 174 ~ld~i~~~vd~~~ 186 (233)
..|.+|.+++.+-
T Consensus 54 ~vd~lE~~ve~~~ 66 (214)
T PF06837_consen 54 KVDKLETDVEDKV 66 (214)
T ss_pred HHHHHhhhHHhCC
Confidence 3444555554443
No 274
>TIGR01149 mtrG N5-methyltetrahydromethanopterin:coenzyme M methyltransferase subunit G. coenzyme M methyltransferase subunit G in methanogenic archaea. This methyltranfersae is membrane-associated enzyme complex that uses methyl-transfer reaction to drive sodium-ion pump. Archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase is involved in the transfer of 'methyl' group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of the methyl moiety in methyl-coenzyme M by another enzyme methyl-coenzyme M reductase.
Probab=29.65 E-value=1.7e+02 Score=19.42 Aligned_cols=22 Identities=9% Similarity=0.430 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHhHhHHHHHHHH
Q 026774 168 LDLHTRLIDDLDQHVDVTDSRL 189 (233)
Q Consensus 168 v~~Q~~~ld~i~~~vd~~~~~l 189 (233)
..+=.+-||.||+.|+.|.+.+
T Consensus 14 ~~~i~~rLd~iEeKVEf~~~E~ 35 (70)
T TIGR01149 14 FNEVMKRLDEIEEKVEFVNGEV 35 (70)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344456777777777766655
No 275
>COG3197 FixS Uncharacterized protein, possibly involved in nitrogen fixation [Inorganic ion transport and metabolism]
Probab=29.43 E-value=70 Score=20.48 Aligned_cols=7 Identities=14% Similarity=0.249 Sum_probs=3.6
Q ss_pred HHHHHHh
Q 026774 225 VIYMLIK 231 (233)
Q Consensus 225 ~i~~~~k 231 (233)
.+||.+|
T Consensus 21 ~flWavk 27 (58)
T COG3197 21 AFLWAVK 27 (58)
T ss_pred HHHHhcc
Confidence 4555554
No 276
>PRK10856 cytoskeletal protein RodZ; Provisional
Probab=29.31 E-value=65 Score=28.30 Aligned_cols=10 Identities=10% Similarity=0.395 Sum_probs=5.5
Q ss_pred CCHHHHHHHH
Q 026774 73 ISEKEMNRRK 82 (233)
Q Consensus 73 ~~~~E~~~R~ 82 (233)
+|..++..|-
T Consensus 28 lSq~~vA~~l 37 (331)
T PRK10856 28 LTQQAVAERL 37 (331)
T ss_pred CCHHHHHHHH
Confidence 5666665443
No 277
>KOG3647 consensus Predicted coiled-coil protein [General function prediction only]
Probab=29.15 E-value=3.7e+02 Score=23.05 Aligned_cols=93 Identities=14% Similarity=0.203 Sum_probs=48.5
Q ss_pred CCCcHHHHHHHHHHHHHHHHHhhHhhhCCCCCCc------------------------hhHHHHHHHHHHHHHHHHhHHH
Q 026774 4 ASDSWIKEYNEAIKLADDINGMISERSSMPASGP------------------------ESQRHASAIRRKITILGTRLDS 59 (233)
Q Consensus 4 ~~D~~~~~~~ev~~~l~~i~~~i~~r~~~~~~~~------------------------e~~~~~~~Ir~~l~~l~~~l~~ 59 (233)
..|.|.+..+-+...+..+|..=+=-..++.+|+ +..+...-++.++..+...+..
T Consensus 44 ~~~~~~q~~~~i~~k~~e~r~~r~lat~l~~~g~~i~e~ls~~~~~~~~~~~aa~Rplel~e~Ekvlk~aIq~i~~~~q~ 123 (338)
T KOG3647|consen 44 EEDQRDQYRSLIGDKIEELRKARELATDLTQRGTTICEMLSKELLHKESLMSAAQRPLELLEVEKVLKSAIQAIQVRLQS 123 (338)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHHHHHHHH
Confidence 3566999998888777776654211112333332 1122333444555555555555
Q ss_pred HHHHHhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 026774 60 LQSLLSKLPGKQPISEKEMNRRKDMLANLRSKVNQMA 96 (233)
Q Consensus 60 L~~~l~~~~~~~~~~~~E~~~R~~~~~~l~~~l~~l~ 96 (233)
+...|....+.-+--.+-+.+|+.-+..+++++..|.
T Consensus 124 ~~~~Lnnvasdea~L~~Kierrk~ElEr~rkRle~Lq 160 (338)
T KOG3647|consen 124 SRAQLNNVASDEAALGSKIERRKAELERTRKRLEALQ 160 (338)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555544432211113445667777777777665543
No 278
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=29.15 E-value=3.3e+02 Score=22.45 Aligned_cols=57 Identities=19% Similarity=0.317 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHH
Q 026774 144 DEGLEKLEETVVSTKHIALAVNEELDLHTRLIDDLDQHVDVTDSRLRRVQKNLAILN 200 (233)
Q Consensus 144 d~~l~~l~~~v~~l~~~~~~i~~ev~~Q~~~ld~i~~~vd~~~~~l~~~~~~l~~~~ 200 (233)
|+.++.|...+...+..+.....-.++-..-|.-++.+++.+..++..+-.++..+-
T Consensus 91 eeri~~lE~~l~ea~~~~ee~e~k~~E~~rkl~~~E~~Le~aEeR~e~~E~ki~eLE 147 (237)
T PF00261_consen 91 EERIEELEQQLKEAKRRAEEAERKYEEVERKLKVLEQELERAEERAEAAESKIKELE 147 (237)
T ss_dssp HHHHHHCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhHHHHH
Confidence 445555555555555555555555555555555555555555555555555444443
No 279
>COG1459 PulF Type II secretory pathway, component PulF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=29.05 E-value=2.3e+02 Score=25.66 Aligned_cols=33 Identities=12% Similarity=0.086 Sum_probs=14.7
Q ss_pred HHHHHHHHHhHhHHHHHHHHHH---HHHHHHHHHHh
Q 026774 170 LHTRLIDDLDQHVDVTDSRLRR---VQKNLAILNKR 202 (233)
Q Consensus 170 ~Q~~~ld~i~~~vd~~~~~l~~---~~~~l~~~~~~ 202 (233)
.-+|.=.+++.-.++...++++ ..+++++++.|
T Consensus 130 ~~gE~~G~L~~~l~~la~y~e~~~~lr~Ki~~Al~Y 165 (397)
T COG1459 130 AAGERSGNLDEVLQRLAKYLEKQAALRKKIKSALIY 165 (397)
T ss_pred HHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3334444444444444444433 34455555554
No 280
>PF06682 DUF1183: Protein of unknown function (DUF1183); InterPro: IPR009567 This family consists of several eukaryotic proteins of around 360 residues in length. The function of this family is unknown.
Probab=29.03 E-value=54 Score=28.68 Aligned_cols=16 Identities=19% Similarity=0.484 Sum_probs=8.1
Q ss_pred HHHHHHHHHHHHHHhh
Q 026774 217 IGIVVLVVVIYMLIKY 232 (233)
Q Consensus 217 i~lv~l~v~i~~~~k~ 232 (233)
+++|+++|++|++.|+
T Consensus 160 f~ii~l~vla~ivY~~ 175 (318)
T PF06682_consen 160 FWIIFLLVLAFIVYSL 175 (318)
T ss_pred hhHHHHHHHHHHHHHH
Confidence 4555555555555544
No 281
>PF04568 IATP: Mitochondrial ATPase inhibitor, IATP; InterPro: IPR007648 ATP synthase inhibitor prevents the enzyme from switching to ATP hydrolysis during collapse of the electrochemical gradient, for example during oxygen deprivation [] ATP synthase inhibitor forms a one to one complex with the F1 ATPase, possibly by binding at the alpha-beta interface. It is thought to inhibit ATP synthesis by preventing the release of ATP []. The minimum inhibitory region for bovine inhibitor (P01096 from SWISSPROT) is from residues 39 to 72 []. The inhibitor has two oligomeric states, dimer (the active state) and tetramer. At low pH , the inhibitor forms a dimer via antiparallel coiled coil interactions between the C-terminal regions of two monomers. At high pH, the inhibitor forms tetramers and higher oligomers by coiled coil interactions involving the N terminus and inhibitory region, thus preventing the inhibitory activity []. ; GO: 0004857 enzyme inhibitor activity, 0045980 negative regulation of nucleotide metabolic process, 0005739 mitochondrion; PDB: 1GMJ_B 1OHH_H 1HF9_B 2V7Q_J.
Probab=29.01 E-value=1.4e+02 Score=21.34 Aligned_cols=26 Identities=31% Similarity=0.686 Sum_probs=18.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHhHH
Q 026774 158 KHIALAVNEELDLHTRLIDDLDQHVD 183 (233)
Q Consensus 158 ~~~~~~i~~ev~~Q~~~ld~i~~~vd 183 (233)
+.+=..+..|+..|.+-|++++..++
T Consensus 75 ~~Lk~kl~~e~~~~~k~i~~le~~I~ 100 (100)
T PF04568_consen 75 KKLKEKLKEEIEHHRKEIDELEKHIE 100 (100)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 33445566678889999999888764
No 282
>KOG3156 consensus Uncharacterized membrane protein [Function unknown]
Probab=28.94 E-value=1.1e+02 Score=25.05 Aligned_cols=24 Identities=17% Similarity=0.333 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhc
Q 026774 77 EMNRRKDMLANLRSKVNQMASTLN 100 (233)
Q Consensus 77 E~~~R~~~~~~l~~~l~~l~~~~~ 100 (233)
|...=+...+.++.+++.+++.++
T Consensus 117 EF~~lr~e~EklkndlEk~ks~lr 140 (220)
T KOG3156|consen 117 EFANLRAENEKLKNDLEKLKSSLR 140 (220)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444455555555555543
No 283
>COG2900 SlyX Uncharacterized protein conserved in bacteria [Function unknown]
Probab=28.62 E-value=1.9e+02 Score=19.44 Aligned_cols=47 Identities=17% Similarity=0.297 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHH
Q 026774 144 DEGLEKLEETVVSTKHIALAVNEELDLHTRLIDDLDQHVDVTDSRLR 190 (233)
Q Consensus 144 d~~l~~l~~~v~~l~~~~~~i~~ev~~Q~~~ld~i~~~vd~~~~~l~ 190 (233)
++-|.+|+-.+.-....-..+++-|.+|...++.+...++....++.
T Consensus 7 E~Ri~eLE~r~AfQE~tieeLn~~laEq~~~i~k~q~qlr~L~~kl~ 53 (72)
T COG2900 7 EARIIELEIRLAFQEQTIEELNDALAEQQLVIDKLQAQLRLLTEKLK 53 (72)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44566666666666555555666666666666665555554444443
No 284
>PF05384 DegS: Sensor protein DegS; InterPro: IPR008595 This is a group of Bacillus DegS proteins. The DegS-DegU two-component regulatory system of Bacillus subtilis controls various processes that characterise the transition from the exponential to the stationary growth phase, including the induction of extracellular degradative enzymes, expression of late competence genes and down-regulation of the sigma D regulon []. The entry also contains one sequence Q8R9D3 from SWISSPROT from Thermoanaerobacter tengcongensis which is described as a sensory transduction histidine kinase.; GO: 0016301 kinase activity, 0007165 signal transduction
Probab=28.37 E-value=2.9e+02 Score=21.57 Aligned_cols=53 Identities=15% Similarity=0.312 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHHhHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 026774 41 RHASAIRRKITILGTRLDSLQSLLSKLPGKQPISEKEMNRRKDMLANLRSKVNQMASTLN 100 (233)
Q Consensus 41 ~~~~~Ir~~l~~l~~~l~~L~~~l~~~~~~~~~~~~E~~~R~~~~~~l~~~l~~l~~~~~ 100 (233)
.+....|.....+..+|.+++..+... + .+...-.......+.++.+++..|.
T Consensus 20 ~I~E~~R~E~~~l~~EL~evk~~v~~~-----I--~evD~Le~~er~aR~rL~eVS~~f~ 72 (159)
T PF05384_consen 20 EIAEQARQEYERLRKELEEVKEEVSEV-----I--EEVDKLEKRERQARQRLAEVSRNFD 72 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-----H--HHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 445555666666666666665544322 1 1222222223344555666666654
No 285
>PF10241 KxDL: Uncharacterized conserved protein; InterPro: IPR019371 This entry represents a conserved region of 80 residues which defines a family of short proteins. There is a characteristic KxDL motif towards the C terminus. The function is unknown.
Probab=28.34 E-value=2e+02 Score=19.81 Aligned_cols=69 Identities=19% Similarity=0.290 Sum_probs=42.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHH
Q 026774 130 QGLVGFQRQIMREQDEGLEKLEETVVSTKHIALAVNEELDLHTRLIDDLDQHVDVTDSRLRRVQKNLAI 198 (233)
Q Consensus 130 ~~~~~~q~~~~~~qd~~l~~l~~~v~~l~~~~~~i~~ev~~Q~~~ld~i~~~vd~~~~~l~~~~~~l~~ 198 (233)
+..+..|.++....+..=..|..-..-...=...+........++|.++-.++|.+..++..-+.++..
T Consensus 14 ~~~l~~Q~~~l~~ln~tn~~L~~~n~~s~~rl~~~~~~f~~~~~~l~~mK~DLd~i~krir~lk~kl~~ 82 (88)
T PF10241_consen 14 DEILALQAQTLGRLNKTNEELLNLNDLSQQRLAEARERFARHTKLLKEMKKDLDYIFKRIRSLKAKLAK 82 (88)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334566666554433332333333333334444556677888899999999999988888877776653
No 286
>PF11120 DUF2636: Protein of unknown function (DUF2636); InterPro: IPR019995 Members of this protein family are found invariably together with genes of bacterial cellulose biosynthesis, and are presumed to be involved in the process []. Members average about 63 amino acids in length and are not uncharacterised. The gene has been designated both YhjT and BcsF (bacterial cellulose synthesis F).
Probab=28.10 E-value=1e+02 Score=20.09 Aligned_cols=17 Identities=12% Similarity=0.399 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHhhC
Q 026774 217 IGIVVLVVVIYMLIKYL 233 (233)
Q Consensus 217 i~lv~l~v~i~~~~k~~ 233 (233)
++.+|++-+.|++-+++
T Consensus 12 l~AlI~~pLGyl~~~~~ 28 (62)
T PF11120_consen 12 LCALIFFPLGYLARRWL 28 (62)
T ss_pred HHHHHHHhHHHHHHHHh
Confidence 44556666777776553
No 287
>PF06789 UPF0258: Uncharacterised protein family (UPF0258); InterPro: IPR009626 This is a group of proteins of unknown function.
Probab=27.94 E-value=12 Score=28.93 Aligned_cols=11 Identities=9% Similarity=0.667 Sum_probs=5.1
Q ss_pred chhHHHHHHHH
Q 026774 207 CTCMCMLLAVI 217 (233)
Q Consensus 207 ~~~~~i~~l~i 217 (233)
|++.++++++|
T Consensus 133 Cki~~Li~~~v 143 (159)
T PF06789_consen 133 CKIFALIVLAV 143 (159)
T ss_pred HHHHHHHHHHH
Confidence 55444444444
No 288
>PF10256 Erf4: Golgin subfamily A member 7/ERF4 family; InterPro: IPR019383 Proteins in this entry include Golgin subfamily A member 7 and the Ras modification protein ERF4.
Probab=27.90 E-value=2.3e+02 Score=20.40 Aligned_cols=25 Identities=4% Similarity=0.042 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHhcCCCchhHHH
Q 026774 188 RLRRVQKNLAILNKRTKGGCTCMCM 212 (233)
Q Consensus 188 ~l~~~~~~l~~~~~~~~~~~~~~~i 212 (233)
.-...-.+++..++++-..+.++.+
T Consensus 34 ef~~iI~~IN~~l~~a~~~~~~~~~ 58 (118)
T PF10256_consen 34 EFEEIINTINQILKEAFEPISWRNI 58 (118)
T ss_pred HHHHHHHHHHHHHHHHhcchhHHHH
Confidence 3344555566666665333444433
No 289
>PF09472 MtrF: Tetrahydromethanopterin S-methyltransferase, F subunit (MtrF); InterPro: IPR013347 Many archaea have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This domain is mostly found in MtrF, where it covers the entire length of the protein. This polypeptide is one of eight subunits of the N5-methyltetrahydromethanopterin: coenzyme M methyltransferase complex found in methanogenic archaea. This is a membrane-associated enzyme complex that uses methyl-transfer reactions to drive a sodium-ion pump []. MtrF itself is involved in the transfer of the methyl group from N5-methyltetrahydromethanopterin to coenzyme M. Subsequently, methane is produced by two-electron reduction of the methyl moiety in methyl-coenzyme M by another enzyme, methyl-coenzyme M reductase. In some organisms this domain is found at the C-terminal region of what appears to be a fusion of the MtrA and MtrF proteins [, ]. The function of these proteins is unknown, though it is likely that they are involved in C1 metabolism.; GO: 0030269 tetrahydromethanopterin S-methyltransferase activity, 0015948 methanogenesis, 0016020 membrane
Probab=27.85 E-value=1.8e+02 Score=19.04 Aligned_cols=7 Identities=14% Similarity=-0.235 Sum_probs=2.6
Q ss_pred HHHHHHH
Q 026774 195 NLAILNK 201 (233)
Q Consensus 195 ~l~~~~~ 201 (233)
++..-+.
T Consensus 32 kL~SGv~ 38 (64)
T PF09472_consen 32 KLESGVM 38 (64)
T ss_pred hhHHHHh
Confidence 3333333
No 290
>PF09777 OSTMP1: Osteopetrosis-associated transmembrane protein 1 precursor; InterPro: IPR019172 Osteopetrosis-associated transmembrane protein 1 (OSTM1) is required for osteoclast and melanocyte maturation and function. Mutations in OSTM1 give rise to autosomal recessive osteopetrosis, also called autosomal recessive Albers-Schonberg disease [, ].
Probab=27.65 E-value=1.6e+02 Score=24.59 Aligned_cols=13 Identities=23% Similarity=0.467 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHHH
Q 026774 218 GIVVLVVVIYMLI 230 (233)
Q Consensus 218 ~lv~l~v~i~~~~ 230 (233)
++|+++.++||++
T Consensus 197 ~~vl~lpv~FY~~ 209 (237)
T PF09777_consen 197 VFVLFLPVLFYLS 209 (237)
T ss_pred HHHHHHHHHHHHh
Confidence 3334344444444
No 291
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=27.49 E-value=3.3e+02 Score=23.86 Aligned_cols=60 Identities=17% Similarity=0.296 Sum_probs=39.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHh
Q 026774 143 QDEGLEKLEETVVSTKHIALAVNEELDLHTRLIDDLDQHVDVTDSRLRRVQKNLAILNKR 202 (233)
Q Consensus 143 qd~~l~~l~~~v~~l~~~~~~i~~ev~~Q~~~ld~i~~~vd~~~~~l~~~~~~l~~~~~~ 202 (233)
....|......+..+..--..+..+.+....-...+...++.+..++.+|.+=+..+..-
T Consensus 233 ~~~~L~~~~~~l~~l~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~kl~rA~~Li~~L~~E 292 (344)
T PF12777_consen 233 AEEQLAEKQAELAELEEKLAALQKEYEEAQKEKQELEEEIEETERKLERAEKLISGLSGE 292 (344)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHhhhcch
Confidence 334555555555555555555555666666667788888888999999888876655554
No 292
>PRK13275 mtrF tetrahydromethanopterin S-methyltransferase subunit F; Provisional
Probab=27.38 E-value=1.9e+02 Score=19.13 Aligned_cols=17 Identities=29% Similarity=0.471 Sum_probs=6.7
Q ss_pred HHHHHHHHHHHHHHHHH
Q 026774 213 LLAVIGIVVLVVVIYML 229 (233)
Q Consensus 213 ~~l~i~lv~l~v~i~~~ 229 (233)
+++.++++++-++++++
T Consensus 49 ~~~AlvLv~ip~~l~~~ 65 (67)
T PRK13275 49 FLLALLLVVVPPLLYGL 65 (67)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33333343344444443
No 293
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=27.06 E-value=59 Score=29.02 Aligned_cols=19 Identities=16% Similarity=0.225 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHhh
Q 026774 214 LAVIGIVVLVVVIYMLIKY 232 (233)
Q Consensus 214 ~l~i~lv~l~v~i~~~~k~ 232 (233)
+++++++++++++|++.++
T Consensus 43 ~~~~~~~~~~~~~~~~~~~ 61 (398)
T PRK10747 43 GLAIILILAMVVLFAIEWL 61 (398)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3344455555555555543
No 294
>PF11945 WASH_WAHD: WAHD domain of WASH complex; InterPro: IPR021854 This entry represents a component of the WASH complex. The WASH complex is present at the surface of endosomes and recruits and activates the Arp2/3 complex to induce actin polymerisation. The WASH complex plays a key role in the fission of tubules that serve as transport intermediates during endosome sorting []. The WASH complex's subunit structure: F-actin-capping protein subunit alpha (CAPZA1, CAPZA2 or CAPZA3), F-actin-capping protein subunit beta (CAPZB), WASH (WASH1, WASH2P, WASH3P, WASH4P, WASH5P or WASH6P), FAM21 (FAM21A, FAM21B or FAM21C), KIAA1033, KIAA0196 (strumpellin) and CCDC53. This entry represents the WASH subunit of the WASH complex. WASH genes duplicated to multiple chromosomal ends during primate evolution, with highest copy number reached in humans, whose WASH repertoires probably vary extensively among individuals []. It is therefore difficult to determine which gene is functional or not. The telomeric region of chromosome 9p is paralogous to the pericentromeric regions of chromosome 9 as well as to 2q. Paralogous regions contain 7 transcriptional units. Duplicated WASH genes are also present in the Xq/Yq pseudoautosomal region, as well as on chromosome 1 and 15. The chromosome 16 copy seems to be a pseudogene.
Probab=26.96 E-value=4.2e+02 Score=22.96 Aligned_cols=34 Identities=9% Similarity=0.363 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHH
Q 026774 158 KHIALAVNEELDLHTRLIDDLDQHVDVTDSRLRR 191 (233)
Q Consensus 158 ~~~~~~i~~ev~~Q~~~ld~i~~~vd~~~~~l~~ 191 (233)
..+|..|..-|..-.+-|..|..-++.++++|+.
T Consensus 35 ~diF~rI~~Rv~~~~~~l~~i~~Ri~~~qaKi~~ 68 (297)
T PF11945_consen 35 NDIFSRISARVERNRERLQAIQQRIEVAQAKIEK 68 (297)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3455566666666666666555555555555543
No 295
>KOG2927 consensus Membrane component of ER protein translocation complex [Intracellular trafficking, secretion, and vesicular transport]
Probab=26.81 E-value=71 Score=28.27 Aligned_cols=20 Identities=20% Similarity=0.378 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 026774 212 MLLAVIGIVVLVVVIYMLIK 231 (233)
Q Consensus 212 i~~l~i~lv~l~v~i~~~~k 231 (233)
|++|+|+=+|||+++|+++.
T Consensus 232 IlvLaIvRlILF~I~~il~~ 251 (372)
T KOG2927|consen 232 ILVLAIVRLILFGITWILTG 251 (372)
T ss_pred HHHHHHHHHHHHHHHHHHhC
Confidence 44455555577777777765
No 296
>PF11511 RhodobacterPufX: Intrinsic membrane protein PufX; InterPro: IPR020169 PufX organises RC-LH1, the photosynthesis reaction centre-light harvesting complex 1 core complex of Rhodobacter sphaeroides []. It also facilitates the exchange of quinol for quinone between the reaction centre and cytochrome bc(1) complexes. In organic solvent, PufX contains two hydrophobic helices which are flanked by unstructured regions and connected by a helical bend [].; PDB: 2DW3_A 2ITA_A 2NRG_A.
Probab=26.56 E-value=1.3e+02 Score=19.80 Aligned_cols=17 Identities=29% Similarity=0.616 Sum_probs=10.0
Q ss_pred HHHHHHHHHHHHHHhhC
Q 026774 217 IGIVVLVVVIYMLIKYL 233 (233)
Q Consensus 217 i~lv~l~v~i~~~~k~~ 233 (233)
++++++++++|++..+|
T Consensus 36 ~~~~~~l~~~~~iG~~L 52 (67)
T PF11511_consen 36 LGLWFLLVALYFIGLLL 52 (67)
T ss_dssp HHHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHHHHhC
Confidence 44555566677766554
No 297
>TIGR02507 MtrF tetrahydromethanopterin S-methyltransferase, F subunit. coenzyme M methyltransferase in methanogenic archaea. This methyltranferase is membrane-associated enzyme complex that uses methy-transfer reaction to drive sodium-ion pump. Archaea domain, have evolved energy-yielding pathways marked by one-carbon biochemistry featuring novel cofactors and enzymes. This transferase is involved in the transfer of 'methyl' group from N5-methyltetrahydromethanopterin to coenzyme M. In an accompanying reaction, methane is produced by two-electron reduction of the methyl moiety in methyl-coenzyme M by another enzyme methyl-coenzyme M reductase.
Probab=26.51 E-value=1.9e+02 Score=18.96 Aligned_cols=11 Identities=27% Similarity=0.649 Sum_probs=7.4
Q ss_pred HHHHHHHHhhC
Q 026774 223 VVVIYMLIKYL 233 (233)
Q Consensus 223 ~v~i~~~~k~~ 233 (233)
+|+|.+++|||
T Consensus 55 lV~IP~ll~~l 65 (65)
T TIGR02507 55 LVAVPIAMKFL 65 (65)
T ss_pred HHHHHHHHHhC
Confidence 46677777765
No 298
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=26.44 E-value=2.9e+02 Score=20.98 Aligned_cols=63 Identities=19% Similarity=0.320 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHhcC
Q 026774 142 EQDEGLEKLEETVVSTKHIALAVNE---ELDLHTRLIDDLDQHVDVTDSRLRRVQKNLAILNKRTK 204 (233)
Q Consensus 142 ~qd~~l~~l~~~v~~l~~~~~~i~~---ev~~Q~~~ld~i~~~vd~~~~~l~~~~~~l~~~~~~~~ 204 (233)
..+..|+.+...+...+..+..-.. .++.=+.-+.-|+..++.+..+|..++.++..+-.+..
T Consensus 46 ~lE~eld~~~~~l~~~k~~lee~~~~~~~~E~l~rriq~LEeele~ae~~L~e~~ekl~e~d~~ae 111 (143)
T PF12718_consen 46 QLEEELDKLEEQLKEAKEKLEESEKRKSNAEQLNRRIQLLEEELEEAEKKLKETTEKLREADVKAE 111 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence 3345566666666666555544433 33455666777888888888888888888876655544
No 299
>PRK06231 F0F1 ATP synthase subunit B; Validated
Probab=26.24 E-value=93 Score=25.24 Aligned_cols=11 Identities=18% Similarity=0.646 Sum_probs=4.1
Q ss_pred HHHHHHHHHHH
Q 026774 219 IVVLVVVIYML 229 (233)
Q Consensus 219 lv~l~v~i~~~ 229 (233)
+|+++++.||+
T Consensus 59 lIlv~lL~k~l 69 (205)
T PRK06231 59 SILLLLGIFLF 69 (205)
T ss_pred HHHHHHHHHHH
Confidence 33333333333
No 300
>PF11027 DUF2615: Protein of unknown function (DUF2615); InterPro: IPR020309 This entry represents a group of uncharacterised protein from the Metazoa, including CD034 (or C4orf34) and YQF4 (or C34C12.4).
Probab=26.13 E-value=2e+02 Score=20.72 Aligned_cols=14 Identities=14% Similarity=0.180 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHhc
Q 026774 190 RRVQKNLAILNKRT 203 (233)
Q Consensus 190 ~~~~~~l~~~~~~~ 203 (233)
+.|++||-.+++.+
T Consensus 15 E~AMrRLl~~LRqs 28 (103)
T PF11027_consen 15 EMAMRRLLNLLRQS 28 (103)
T ss_pred HHHHHHHHHHHHHh
Confidence 35777777777753
No 301
>TIGR02848 spore_III_AC stage III sporulation protein AC. Members of this protein family are designated SpoIIIAC, part of the spoIIIA operon of sporulation genes whose mutant phenotype is linked to sporulation stage III. Members of this family are encoded by the genome of a species if and only if that species is capable of endospore formation, as in Bacillus subtilis. The molecular function of this small, probable integral membrane protein is unknown.
Probab=25.93 E-value=2e+02 Score=18.85 Aligned_cols=37 Identities=19% Similarity=0.120 Sum_probs=17.5
Q ss_pred HHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHHHh
Q 026774 194 KNLAILNKRTKGGCTCMCMLLAVIGIVVLVVVIYMLIK 231 (233)
Q Consensus 194 ~~l~~~~~~~~~~~~~~~i~~l~i~lv~l~v~i~~~~k 231 (233)
.=+..+++.++. --+-.+..|..++++++.++-++..
T Consensus 17 avl~~vLk~sGk-ee~A~~~tLaG~iiVL~~Vi~~i~~ 53 (64)
T TIGR02848 17 AVIHTILKQSGK-EEQAQMVTLAGIVVVLFMVITLIND 53 (64)
T ss_pred HHHHHHHHHcCc-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345566776554 2223333444444455445444433
No 302
>PF09527 ATPase_gene1: Putative F0F1-ATPase subunit (ATPase_gene1)
Probab=25.89 E-value=1.7e+02 Score=18.01 Aligned_cols=25 Identities=20% Similarity=0.369 Sum_probs=13.9
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHh
Q 026774 207 CTCMCMLLAVIGIVVLVVVIYMLIK 231 (233)
Q Consensus 207 ~~~~~i~~l~i~lv~l~v~i~~~~k 231 (233)
..++.++.+++.++.-+..+|..+|
T Consensus 31 ~p~~~~~g~llG~~~g~~~~~~~~k 55 (55)
T PF09527_consen 31 SPWFTLIGLLLGIAAGFYNVYRLVK 55 (55)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHhC
Confidence 3455555555556555556665554
No 303
>PF05781 MRVI1: MRVI1 protein; InterPro: IPR008677 This family consists of mammalian MRVI1 proteins which are related to the lymphoid-restricted membrane protein (JAW1) and the IP3 receptor associated cGMP kinase substrates A and B (IRAGA and IRAGB). The function of MRVI1 is unknown although mutations in the Mrvi1 gene induces myeloid leukaemia by altering the expression of a gene important for myeloid cell growth and/or differentiation so it has been speculated that Mrvi1 is a tumour suppressor gene []. IRAG is very similar in sequence to MRVI1 and is an essential NO/cGKI-dependent regulator of IP3-induced calcium release. Activation of cGKI decreases IP3-stimulated elevations in intracellular calcium, induces smooth muscle relaxation and contributes to the antiproliferative and pro-apoptotic effects of NO/cGMP []. Jaw1 is a member of a class of proteins with COOH-terminal hydrophobic membrane anchors and is structurally similar to proteins involved in vesicle targeting and fusion. This suggests that the function and/or the structure of the ER in lymphocytes may be modified by lymphoid-restricted resident ER proteins [].
Probab=25.81 E-value=2e+02 Score=27.09 Aligned_cols=21 Identities=29% Similarity=0.276 Sum_probs=12.0
Q ss_pred HHHHHHHHHHHHhHHHHHHHH
Q 026774 44 SAIRRKITILGTRLDSLQSLL 64 (233)
Q Consensus 44 ~~Ir~~l~~l~~~l~~L~~~l 64 (233)
.+.+..+.++...|.-|....
T Consensus 251 ~e~~e~~~kl~~~l~~l~~~~ 271 (538)
T PF05781_consen 251 NESREIIQKLQKSLDVLHQCA 271 (538)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 445555666666666665554
No 304
>PF08041 PetM: PetM family of cytochrome b6f complex subunit 7; InterPro: IPR012595 This family consists of the PetM family of cytochrome b6f complex subunit IV. The cytochrome b6f complex consists of 7 subunits and contains 2 beta haem's and 1 chlorophyll alpha per cytochrome f. It is highly active in transferring electrons from decylplastoquinol to oxidised plastocyanin [].; GO: 0009512 cytochrome b6f complex; PDB: 2ZT9_F 1Q90_M 2E76_F 2E75_F 2E74_F 2D2C_S 1VF5_S.
Probab=25.73 E-value=1.3e+02 Score=16.68 Aligned_cols=8 Identities=25% Similarity=0.555 Sum_probs=4.8
Q ss_pred HHHHHHhh
Q 026774 225 VIYMLIKY 232 (233)
Q Consensus 225 ~i~~~~k~ 232 (233)
+.|.++|.
T Consensus 20 ~Gf~LLki 27 (31)
T PF08041_consen 20 LGFVLLKI 27 (31)
T ss_dssp HHHHHHHT
T ss_pred HHHHhhee
Confidence 56666663
No 305
>PF05393 Hum_adeno_E3A: Human adenovirus early E3A glycoprotein; InterPro: IPR008652 This family consists of several early glycoproteins (E3A), from human adenovirus type 2.; GO: 0016021 integral to membrane
Probab=25.63 E-value=88 Score=21.87 Aligned_cols=8 Identities=25% Similarity=0.995 Sum_probs=3.2
Q ss_pred HHHHHHHH
Q 026774 221 VLVVVIYM 228 (233)
Q Consensus 221 ~l~v~i~~ 228 (233)
+++|+.|+
T Consensus 45 il~Vilwf 52 (94)
T PF05393_consen 45 ILLVILWF 52 (94)
T ss_pred HHHHHHHH
Confidence 33334443
No 306
>PF11057 Cortexin: Cortexin of kidney; InterPro: IPR020066 Cortexin is a neuron-specific, 82-residue membrane protein which is found especially in vertebrate brain cortex tissue. It may mediate extracellular or intracellular signalling of cortical neurons during forebrain development. Cortexin is present at significant levels in the foetal brain, suggesting that it may be important to neurons of both the developing and adult cerebral cortex. Cortexin has a conserved single membrane-spanning region in the middle of each sequence []. In humans, there is selective expression of Cortexin 3 (CTXN3) in the kidney as well as the brain []. This entry contains Cortexins 1, 2 and 3.; GO: 0031224 intrinsic to membrane
Probab=25.39 E-value=1.2e+02 Score=20.51 Aligned_cols=17 Identities=18% Similarity=0.153 Sum_probs=9.1
Q ss_pred hhHHHHHHHHHHHHHHH
Q 026774 208 TCMCMLLAVIGIVVLVV 224 (233)
Q Consensus 208 ~~~~i~~l~i~lv~l~v 224 (233)
-++++++|+|++++++|
T Consensus 30 ~faFV~~L~~fL~~liV 46 (81)
T PF11057_consen 30 AFAFVGLLCLFLGLLIV 46 (81)
T ss_pred eehHHHHHHHHHHHHHH
Confidence 34455555555555554
No 307
>PF15176 LRR19-TM: Leucine-rich repeat family 19 TM domain
Probab=25.31 E-value=1.2e+02 Score=21.69 Aligned_cols=14 Identities=21% Similarity=0.249 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHh
Q 026774 218 GIVVLVVVIYMLIK 231 (233)
Q Consensus 218 ~lv~l~v~i~~~~k 231 (233)
+.+++-++|++.+|
T Consensus 26 ~al~~SlLIalaaK 39 (102)
T PF15176_consen 26 TALVTSLLIALAAK 39 (102)
T ss_pred HHHHHHHHHHHHHH
Confidence 34444556666666
No 308
>PRK10573 type IV pilin biogenesis protein; Provisional
Probab=25.19 E-value=3.2e+02 Score=24.29 Aligned_cols=12 Identities=17% Similarity=0.094 Sum_probs=4.7
Q ss_pred HHhHhHHHHHHH
Q 026774 177 DLDQHVDVTDSR 188 (233)
Q Consensus 177 ~i~~~vd~~~~~ 188 (233)
++++.+++....
T Consensus 138 ~L~~~l~~la~~ 149 (399)
T PRK10573 138 KLDECCFQLARQ 149 (399)
T ss_pred CHHHHHHHHHHH
Confidence 333444443333
No 309
>KOG4677 consensus Golgi integral membrane protein [Intracellular trafficking, secretion, and vesicular transport; General function prediction only]
Probab=25.07 E-value=1.9e+02 Score=26.67 Aligned_cols=40 Identities=13% Similarity=0.121 Sum_probs=26.1
Q ss_pred HHHHHhH--hHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHH
Q 026774 174 LIDDLDQ--HVDVTDSRLRRVQKNLAILNKRTKGGCTCMCML 213 (233)
Q Consensus 174 ~ld~i~~--~vd~~~~~l~~~~~~l~~~~~~~~~~~~~~~i~ 213 (233)
++.++++ .+-++...++.+--++.++++...+.+.+|++.
T Consensus 493 l~~d~~~~~q~r~a~s~VD~~s~~l~~~lr~~psArif~~~Y 534 (554)
T KOG4677|consen 493 LYRDLKDRQQLRAARSKVDKGSAELEKILRLLPSARIFWKNY 534 (554)
T ss_pred HhhhhhhhHHHHHHHhhcchhhHHHHHHHhcCchhHHHHHHH
Confidence 3444443 455666677777788888888877756656543
No 310
>PHA02414 hypothetical protein
Probab=25.05 E-value=2.6e+02 Score=19.93 Aligned_cols=38 Identities=11% Similarity=0.316 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHH
Q 026774 149 KLEETVVSTKHIALAVNEELDLHTRLIDDLDQHVDVTD 186 (233)
Q Consensus 149 ~l~~~v~~l~~~~~~i~~ev~~Q~~~ld~i~~~vd~~~ 186 (233)
+|...|.+|+.|-..+...+.-|.+--..|-+.+++..
T Consensus 33 eL~~av~ELRdivvslDKd~Av~sEKqshi~yQi~~Le 70 (111)
T PHA02414 33 ELEVAVAELRDIVVSLDKDVAVNSEKQSHIYYQIERLE 70 (111)
T ss_pred HHHHHHHHHHHHHHHhhhHhhhhHHHhhHHHHHHHHHH
Confidence 45556666666666666666555555555555554433
No 311
>PF06009 Laminin_II: Laminin Domain II; InterPro: IPR010307 It has been suggested that the domains I and II from laminin A, B1 and B2 may come together to form a triple helical coiled-coil structure [].; GO: 0007155 cell adhesion, 0005604 basement membrane; PDB: 2WJS_A.
Probab=25.02 E-value=24 Score=26.69 Aligned_cols=52 Identities=12% Similarity=0.281 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HhHhHHHHHHHHHHHH
Q 026774 142 EQDEGLEKLEETVVSTKHIALAVNEELDLHTRLIDD---LDQHVDVTDSRLRRVQ 193 (233)
Q Consensus 142 ~qd~~l~~l~~~v~~l~~~~~~i~~ev~~Q~~~ld~---i~~~vd~~~~~l~~~~ 193 (233)
.-...++....++..|...+-.+.+.+..-....+. |..++.+....+..|.
T Consensus 49 ~~~~~l~~a~~~v~~L~~~~~~L~~kl~~l~~~~~~~~~ls~nI~~IrelI~qAR 103 (138)
T PF06009_consen 49 DANKALDDANNSVKNLEQLAPDLLDKLKPLENLSENNSNLSRNISRIRELIAQAR 103 (138)
T ss_dssp -------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHH
Confidence 445566666777777766666665555444444444 4444433333333333
No 312
>smart00806 AIP3 Actin interacting protein 3. Aip3p/Bud6p is a regulator of cell and cytoskeletal polarity in Saccharomyces cerevisiae that was previously identified as an actin-interacting protein. Actin-interacting protein 3 (Aip3p) localizes at the cell cortex where cytoskeleton assembly must be achieved to execute polarized cell growth, and deletion of AIP3 causes gross defects in cell and cytoskeletal polarity. Aip3p localization is mediated by the secretory pathway, mutations in early- or late-acting components of the secretory apparatus lead to Aip3p mislocalization PUBMED:10679021.
Probab=24.79 E-value=5.4e+02 Score=23.53 Aligned_cols=90 Identities=12% Similarity=0.310 Sum_probs=0.0
Q ss_pred CCcHHHHHHHHHHHHHHHHHhhHhhhCCCCCCchhHHHHHHHHHHHHHHHHhHHHHHHHHhcCCC-----------CCCC
Q 026774 5 SDSWIKEYNEAIKLADDINGMISERSSMPASGPESQRHASAIRRKITILGTRLDSLQSLLSKLPG-----------KQPI 73 (233)
Q Consensus 5 ~D~~~~~~~ev~~~l~~i~~~i~~r~~~~~~~~e~~~~~~~Ir~~l~~l~~~l~~L~~~l~~~~~-----------~~~~ 73 (233)
+|.-.-..++++..+..+|..+-.|.--|. .+.-..+.+.|..++.+|..|++.|...+. +---
T Consensus 219 Sd~lltkVDDLQD~vE~LRkDV~~RgVRp~-----~~qLe~v~kdi~~a~keL~~m~~~i~~eKP~WkKiWE~EL~~VcE 293 (426)
T smart00806 219 SDSLLTKVDDLQDIIEALRKDVAQRGVRPS-----KKQLETVQKELETARKELKKMEEYIDIEKPIWKKIWEAELDKVCE 293 (426)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCCCC-----HHHHHHHHHHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHHHHH
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026774 74 SEKEMNRRKDMLANLRSKVNQMASTL 99 (233)
Q Consensus 74 ~~~E~~~R~~~~~~l~~~l~~l~~~~ 99 (233)
-...+.-..+++..|+..+..+...|
T Consensus 294 EqqfL~lQedL~~DL~dDL~ka~eTf 319 (426)
T smart00806 294 EQQFLTLQEDLIADLKEDLEKAEETF 319 (426)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
No 313
>COG3736 VirB8 Type IV secretory pathway, component VirB8 [Intracellular trafficking and secretion]
Probab=24.71 E-value=1.2e+02 Score=25.38 Aligned_cols=35 Identities=17% Similarity=0.217 Sum_probs=14.9
Q ss_pred HHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHH
Q 026774 193 QKNLAILNKRTKGGCTCMCMLLAVIGIVVLVVVIYML 229 (233)
Q Consensus 193 ~~~l~~~~~~~~~~~~~~~i~~l~i~lv~l~v~i~~~ 229 (233)
+.++.++.++- ++.||+++++.++.++..+.|..+
T Consensus 30 ~~r~~~~~r~r--~~~~~va~~~~~l~v~~~~~Ia~l 64 (239)
T COG3736 30 EDRVIKLERSR--RLAWRVAILFTLLAVAAVIAIAIL 64 (239)
T ss_pred HHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHhh
Confidence 44455555542 344443333333333333344433
No 314
>cd00193 t_SNARE Soluble NSF (N-ethylmaleimide-sensitive fusion protein)-Attachment protein (SNAP) REceptor domain; these alpha-helical motifs form twisted and parallel heterotetrameric helix bundles; the core complex contains one helix from a protein that is anchored in the vesicle membrane (synaptobrevin), one helix from a protein of the target membrane (syntaxin), and two helices from another protein anchored in the target membrane (SNAP-25); their interaction forms a core which is composed of a polar zero layer, a flanking leucine-zipper layer acts as a water tight shield to isolate ionic interactions in the zero layer from the surrounding solvent
Probab=24.69 E-value=1.7e+02 Score=17.65 Aligned_cols=47 Identities=19% Similarity=0.263 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHH
Q 026774 144 DEGLEKLEETVVSTKHIALAVNEELDLHTRLIDDLDQHVDVTDSRLR 190 (233)
Q Consensus 144 d~~l~~l~~~v~~l~~~~~~i~~ev~~Q~~~ld~i~~~vd~~~~~l~ 190 (233)
...+..|......+..+-..-+.-++.=..-++.....+..+..++.
T Consensus 12 ~~~i~~l~~l~~~i~~~v~~Q~~~ld~i~~~~~~~~~~~~~~~~~l~ 58 (60)
T cd00193 12 EASIGELKQIFLDLGTEVEEQGELLDRIEDNVDNADVNVKRANKRLK 58 (60)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444444444444444444444455555555555555555555554
No 315
>PF00804 Syntaxin: Syntaxin; InterPro: IPR006011 Syntaxins A and B are nervous system-specific proteins implicated in the docking of synaptic vesicles with the presynaptic plasma membrane. Syntaxins are a family of receptors for intracellular transport vesicles. Each target membrane may be identified by a specific member of the syntaxin family []. Members of the syntaxin family [, ] have a size ranging from 30 Kd to 40 Kd; a C-terminal extremity which is highly hydrophobic and anchors the protein on the cytoplasmic surface of cellular membranes; a central, well conserved region, which seems to be in a coiled-coil conformation. ; GO: 0016020 membrane; PDB: 1S94_B 1EZ3_A 3C98_B 1BR0_A 1FIO_A 2XHE_B.
Probab=24.56 E-value=2.3e+02 Score=19.19 Aligned_cols=62 Identities=21% Similarity=0.352 Sum_probs=34.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHh
Q 026774 141 REQDEGLEKLEETVVSTKHIALAVNEELDLHTRLIDDLDQHVDVTDSRLRRVQKNLAILNKR 202 (233)
Q Consensus 141 ~~qd~~l~~l~~~v~~l~~~~~~i~~ev~~Q~~~ld~i~~~vd~~~~~l~~~~~~l~~~~~~ 202 (233)
.+....|+.|...+.++..+-..+......-...=.+|+.-++.+.........+|+.+-..
T Consensus 10 ~~i~~~i~~i~~~~~~l~~l~~~~l~~~~~d~~~~~el~~l~~~i~~~~~~~~~~lk~l~~~ 71 (103)
T PF00804_consen 10 QEIREDIDKIKEKLNELRKLHKKILSSPDQDSELKRELDELTDEIKQLFQKIKKRLKQLSKD 71 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455666666666666666655555444223444455555555555555566666655544
No 316
>PF15183 MRAP: Melanocortin-2 receptor accessory protein family
Probab=24.42 E-value=1.4e+02 Score=20.73 Aligned_cols=16 Identities=13% Similarity=0.254 Sum_probs=6.2
Q ss_pred HHHHHHHHHHHHHHHH
Q 026774 215 AVIGIVVLVVVIYMLI 230 (233)
Q Consensus 215 l~i~lv~l~v~i~~~~ 230 (233)
|.++++++|+++.+++
T Consensus 46 LA~FV~~lF~iL~~ms 61 (90)
T PF15183_consen 46 LAAFVVFLFLILLYMS 61 (90)
T ss_pred HHHHHHHHHHHHHHHh
Confidence 3333333343444443
No 317
>PF03904 DUF334: Domain of unknown function (DUF334); InterPro: IPR005602 This is a family of proteins found in Staphylococcus aureus plasmid with no characterised function.
Probab=24.30 E-value=4.2e+02 Score=22.03 Aligned_cols=31 Identities=10% Similarity=0.090 Sum_probs=16.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHhHHHHHHHH
Q 026774 159 HIALAVNEELDLHTRLIDDLDQHVDVTDSRL 189 (233)
Q Consensus 159 ~~~~~i~~ev~~Q~~~ld~i~~~vd~~~~~l 189 (233)
++...++.|+.++.+-++++-..+-.+..+.
T Consensus 113 e~k~~~~~ei~k~r~e~~~ml~evK~~~E~y 143 (230)
T PF03904_consen 113 ELKNIAQNEIKKVREENKSMLQEVKQSHEKY 143 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444466777666655555554444433333
No 318
>PF11688 DUF3285: Protein of unknown function (DUF3285); InterPro: IPR021702 This family of proteins with unknown function appears to be restricted to Cyanobacteria.
Probab=24.27 E-value=1.7e+02 Score=17.54 Aligned_cols=37 Identities=14% Similarity=0.275 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHH
Q 026774 188 RLRRVQKNLAILNKRTKGGCTCMCMLLAVIGIVVLVVVIYML 229 (233)
Q Consensus 188 ~l~~~~~~l~~~~~~~~~~~~~~~i~~l~i~lv~l~v~i~~~ 229 (233)
.++-|++.| +++.+. ..+-.++..+.++.+++.+-|+
T Consensus 7 yvKLAMRNM---VRKg~~--SL~HF~LT~~gll~~lv~la~l 43 (45)
T PF11688_consen 7 YVKLAMRNM---VRKGGT--SLFHFGLTAVGLLGFLVGLAYL 43 (45)
T ss_pred HHHHHHHHH---HHccCc--chhHHHHHHHHHHHHHHHHHHh
Confidence 445555554 444333 2222333334444444444443
No 319
>cd00238 ERp29c ERp29 and ERp38, C-terminal domain; composed of the protein disulfide isomerase (PDI)-like proteins ERp29 and ERp38. ERp29 (also called ERp28) is a ubiquitous endoplasmic reticulum (ER)-resident protein expressed in high levels in secretory cells. It contains a redox inactive TRX-like domain at the N-terminus. The expression profile of ERp29 suggests a role in secretory protein production, distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex and is essential in regulating the secretion of thyroglobulin. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase. ERp38 is a P5-like protein, first isolated from alfalfa (the cDNA clone was named G1), which contains two redox active TRX domains at the N-terminus, like human P5.
Probab=24.20 E-value=2.6e+02 Score=19.58 Aligned_cols=48 Identities=23% Similarity=0.270 Sum_probs=30.2
Q ss_pred hHHHHHHHH-HHHHHHHHhHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHH
Q 026774 39 SQRHASAIR-RKITILGTRLDSLQSLLSKLPGKQPISEKEMNRRKDMLAN 87 (233)
Q Consensus 39 ~~~~~~~Ir-~~l~~l~~~l~~L~~~l~~~~~~~~~~~~E~~~R~~~~~~ 87 (233)
..+....|- ..-..+..++.+|++.+....- ..-...|+..|.+.+..
T Consensus 44 Y~kvm~Ki~~kg~~yv~~E~~RL~~iL~~~~l-s~~K~del~~R~NIL~~ 92 (93)
T cd00238 44 YVKVMEKILEKGEDYVEKELARLERLLEKKGL-APEKADELTRRLNILRS 92 (93)
T ss_pred HHHHHHHHHHcchhHHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHhc
Confidence 344444444 6677888999999999865320 01234677788887653
No 320
>PF13198 DUF4014: Protein of unknown function (DUF4014)
Probab=23.86 E-value=92 Score=20.79 Aligned_cols=8 Identities=0% Similarity=0.488 Sum_probs=3.4
Q ss_pred HHHHHHHH
Q 026774 223 VVVIYMLI 230 (233)
Q Consensus 223 ~v~i~~~~ 230 (233)
++++|+.+
T Consensus 34 ll~~~~i~ 41 (72)
T PF13198_consen 34 LLFVWIIG 41 (72)
T ss_pred HHHHHHHH
Confidence 33444443
No 321
>PRK10404 hypothetical protein; Provisional
Probab=23.78 E-value=2.8e+02 Score=19.82 Aligned_cols=43 Identities=12% Similarity=0.124 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhHhHHHHHHHHHH
Q 026774 149 KLEETVVSTKHIALAVNEELDLHTR-LIDDLDQHVDVTDSRLRR 191 (233)
Q Consensus 149 ~l~~~v~~l~~~~~~i~~ev~~Q~~-~ld~i~~~vd~~~~~l~~ 191 (233)
+|..-+..+.++...-+++..+..+ +=++++..++.+..++..
T Consensus 13 dl~~L~~dle~Ll~~~~~~a~e~~~~lR~r~~~~L~~ar~~l~~ 56 (101)
T PRK10404 13 DLTLLSETLEEVLRSSGDPADQKYVELKARAEKALDDVKKRVSQ 56 (101)
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333334444444444333333 223455555555554443
No 322
>smart00319 TarH Homologues of the ligand binding domain of Tar. Homologues of the ligand binding domain of the wild-type bacterial aspartate receptor, Tar.
Probab=23.12 E-value=2.9e+02 Score=19.72 Aligned_cols=15 Identities=7% Similarity=0.076 Sum_probs=5.7
Q ss_pred HHHHHHHHHHHHhHH
Q 026774 44 SAIRRKITILGTRLD 58 (233)
Q Consensus 44 ~~Ir~~l~~l~~~l~ 58 (233)
...+..+........
T Consensus 45 ~~a~~~l~~a~~~~~ 59 (135)
T smart00319 45 TAASESLKQAEKNYK 59 (135)
T ss_pred HHHHHHHHHHHHHHH
Confidence 333333333333333
No 323
>PF13677 MotB_plug: Membrane MotB of proton-channel complex MotA/MotB
Probab=23.09 E-value=1e+02 Score=19.56 Aligned_cols=16 Identities=6% Similarity=0.312 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHH
Q 026774 215 AVIGIVVLVVVIYMLI 230 (233)
Q Consensus 215 l~i~lv~l~v~i~~~~ 230 (233)
++.+++.+||++|.+.
T Consensus 24 lmTLLl~fFVlL~s~s 39 (58)
T PF13677_consen 24 LMTLLLAFFVLLFSMS 39 (58)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3444555566666543
No 324
>TIGR01568 A_thal_3678 uncharacterized plant-specific domain TIGR01568. This model describes an uncharacterized domain of about 70 residues found exclusively in plants, generally toward the C-terminus of proteins of 200 to 350 amino acids in length. At least 14 such proteins are found in Arabidopsis thaliana. Other regions of these proteins tend to consist largely of low-complexity sequence.
Probab=23.07 E-value=1e+02 Score=20.30 Aligned_cols=19 Identities=5% Similarity=0.156 Sum_probs=16.4
Q ss_pred CCCCcHHHHHHHHHHHHHH
Q 026774 3 SASDSWIKEYNEAIKLADD 21 (233)
Q Consensus 3 s~~D~~~~~~~ev~~~l~~ 21 (233)
.|.|||.++++.+.+.+..
T Consensus 6 ~S~DPy~DFr~SM~EMI~~ 24 (66)
T TIGR01568 6 ESDDPYEDFRRSMEEMIEE 24 (66)
T ss_pred CCCChHHHHHHHHHHHHHH
Confidence 4789999999999988775
No 325
>PRK11876 petM cytochrome b6-f complex subunit PetM; Reviewed
Probab=22.90 E-value=1.5e+02 Score=16.57 Aligned_cols=7 Identities=29% Similarity=0.135 Sum_probs=4.3
Q ss_pred HHHHHHh
Q 026774 225 VIYMLIK 231 (233)
Q Consensus 225 ~i~~~~k 231 (233)
+.|.++|
T Consensus 22 lGf~LLk 28 (32)
T PRK11876 22 GGALLLK 28 (32)
T ss_pred HHHHhee
Confidence 5666665
No 326
>PF05791 Bacillus_HBL: Bacillus haemolytic enterotoxin (HBL); InterPro: IPR008414 This family consists of several Bacillus haemolytic enterotoxins (HblC, HblD, HblA, NheA, and NheB), which can cause food poisoning in humans []. Haemolysin BL (encoded by HBL) and non-haemolytic enterotoxin (encoded by NHE), represent the major enterotoxins produced by Bacillus cereus. Most of the cytotoxic activity of B. cereus isolates has been attributed to the level of Nhe, which may indicate a highly diarrheic potential []. The exact mechanism by which B. cereus causes diarrhoea is unknown. Hbl, cytotoxin K (CytK) and Nhe are all putative causes. Both Hbl and Nhe are three-component cytotoxins and maximal cytotoxicity of Nhe against epithelia is dependent on all three components. Nhe has haemolytic activity against erythrocytes from a variety of species. It is possible that the common structural and functional properties of these toxins indicate that the Hbl/Nhe and ClyA families of toxins constitute a superfamily of pore-forming cytotoxins []. The high virulence of some strains is thought to be due to the greater cytotoxic activity of CytK-1 compared to CytK-2, and to a high level of cytK expression []. Haemolysin BL and non-haemolytic enterotoxin production are both influenced by pH and micro []. This entry is found in cytotoxic proteins that form part of the enterotoxin complex and bind to erythrocytes. HblA is composed of a binding component, B, and two lytic components, L1 and L2. All three subunits act synergically to cause hemolysis.; GO: 0009405 pathogenesis, 0016020 membrane; PDB: 2NRJ_A.
Probab=22.80 E-value=3.9e+02 Score=21.14 Aligned_cols=61 Identities=10% Similarity=0.159 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHhcC
Q 026774 144 DEGLEKLEETVVSTKHIALAVNEELDLHTRLIDDLDQHVDVTDSRLRRVQKNLAILNKRTK 204 (233)
Q Consensus 144 d~~l~~l~~~v~~l~~~~~~i~~ev~~Q~~~ld~i~~~vd~~~~~l~~~~~~l~~~~~~~~ 204 (233)
.+..+.+...+..|..-...+..+++.....|.+....+..-...+.....++..++....
T Consensus 102 ~~~~~~~~~~i~~L~~~i~~~q~~~~~~i~~L~~f~~~l~~D~~~l~~~~~~l~~~l~~~~ 162 (184)
T PF05791_consen 102 QKDKEDLKEIIEDLQDQIQKNQDKVQALINELNDFKDKLQKDSRNLKTDVDELQSILAGEN 162 (184)
T ss_dssp HT-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhccc
Confidence 3456778888888888888888888888888888888888888888888888877776544
No 327
>PF01034 Syndecan: Syndecan domain; InterPro: IPR001050 The syndecans are transmembrane proteoglycans which are involved in the organisation of cytoskeleton and/or actin microfilaments, and have important roles as cell surface receptors during cell-cell and/or cell-matrix interactions [, ]. Structurally, these proteins consist of four separate domains: A signal sequence; An extracellular domain (ectodomain) of variable length whose sequence is not evolutionary conserved in the various forms of syndecans. The ectodomain contains the sites of attachment of the heparan sulphate glycosaminoglycan side chains; A transmembrane region; A highly conserved cytoplasmic domain of about 30 to 35 residues, which could interact with cytoskeletal proteins. The proteins known to belong to this family are: Syndecan 1. Syndecan 2 or fibroglycan. Syndecan 3 or neuroglycan or N-syndecan. Syndecan 4 or amphiglycan or ryudocan. Drosophila syndecan. Caenorhabditis elegans probable syndecan (F57C7.3). Syndecan-4, a transmembrane heparan sulphate proteoglycan, is a coreceptor with integrins in cell adhesion. It has been suggested to form a ternary signalling complex with protein kinase Calpha and phosphatidylinositol 4,5-bisphosphate (PIP2). Structural studies have demonstrated that the cytoplasmic domain undergoes a conformational transition and forms a symmetric dimer in the presence of phospholipid activator PIP2, and whose overall structure in solution exhibits a twisted clamp shape having a cavity in the centre of dimeric interface. In addition, it has been observed that the syndecan-4 variable domain interacts, strongly, not only with fatty acyl groups but also the anionic head group of PIP2. These findings indicate that PIP2 promotes oligomerisation of the syndecan-4 cytoplasmic domain for transmembrane signalling and cell-matrix adhesion [, ].; GO: 0008092 cytoskeletal protein binding, 0016020 membrane; PDB: 1EJQ_B 1EJP_B 1YBO_C 1OBY_Q.
Probab=22.73 E-value=24 Score=23.07 Aligned_cols=12 Identities=25% Similarity=0.764 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHH
Q 026774 218 GIVVLVVVIYML 229 (233)
Q Consensus 218 ~lv~l~v~i~~~ 229 (233)
+++++++++|.+
T Consensus 25 ailLIlf~iyR~ 36 (64)
T PF01034_consen 25 AILLILFLIYRM 36 (64)
T ss_dssp ------------
T ss_pred HHHHHHHHHHHH
Confidence 334444455543
No 328
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=22.66 E-value=80 Score=28.24 Aligned_cols=18 Identities=11% Similarity=0.159 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHh
Q 026774 214 LAVIGIVVLVVVIYMLIK 231 (233)
Q Consensus 214 ~l~i~lv~l~v~i~~~~k 231 (233)
+++|+++++++++|++..
T Consensus 43 ~~~~~~~~~~~~~~~~~~ 60 (409)
T TIGR00540 43 GLAIFFIIALAIIFAFEW 60 (409)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344555555555555543
No 329
>COG1459 PulF Type II secretory pathway, component PulF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=22.51 E-value=3.5e+02 Score=24.44 Aligned_cols=42 Identities=19% Similarity=0.192 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHhHhHHHHH---HHHHHHHHHHHHHHHh
Q 026774 161 ALAVNEELDLHTRLIDDLDQHVDVTD---SRLRRVQKNLAILNKR 202 (233)
Q Consensus 161 ~~~i~~ev~~Q~~~ld~i~~~vd~~~---~~l~~~~~~l~~~~~~ 202 (233)
|..+.+-++.+....+++-..+=.+. .++..+-.++.+..++
T Consensus 107 G~sls~al~~~~~~F~~~~~~~v~~gE~~G~L~~~l~~la~y~e~ 151 (397)
T COG1459 107 GKSLSEALAQLPGVFPDLYVAMVAAGERSGNLDEVLQRLAKYLEK 151 (397)
T ss_pred CCcHHHHHHhCcccCCHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 33344445666655555555443333 3344455555544444
No 330
>PF09451 ATG27: Autophagy-related protein 27; InterPro: IPR018939 Autophagy is a degradative transport pathway that delivers cytosolic proteins to the lysosome (vacuole) [] and is induced by starvation []. Cytosolic proteins appear inside the vacuole enclosed in autophagic vesicles. Autophagy significantly differs from other transport pathways by using double membrane layered transport intermediates, called autophagosomes [, ]. The breakdown of vesicular transport intermediates is a unique feature of autophagy []. Autophagy can also function in the elimination of invading bacteria and antigens []. There are more than 25 AuTophaGy-related (ATG) genes that are essential for autophagy, although it is still not known how the autophagosome is made. Atg9 is a potential membrane carrier to deliver lipids that are used to form the vesicle. Atg27 is another transmembrane protein, and is a cycling protein []. It acts as an effector of VPS34 phosphatidylinositol 3-phosphate kinase signalling and regulates the cytoplasm to vacuole transport (Cvt) vesicle formation. It is also required for autophagy-dependent cycling of ATG9.
Probab=22.41 E-value=76 Score=26.86 Aligned_cols=21 Identities=14% Similarity=0.311 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 026774 210 MCMLLAVIGIVVLVVVIYMLI 230 (233)
Q Consensus 210 ~~i~~l~i~lv~l~v~i~~~~ 230 (233)
|-.|..+++++++++++|+++
T Consensus 200 ~g~f~wl~i~~~l~~~~Y~i~ 220 (268)
T PF09451_consen 200 WGFFTWLFIILFLFLAAYLIF 220 (268)
T ss_pred ccHHHHHHHHHHHHHHHHhhh
No 331
>PF05827 ATP-synt_S1: Vacuolar ATP synthase subunit S1 (ATP6S1); InterPro: IPR024722 This family consists of metazoan vacuolar ATP synthase subunit S1 proteins [] and fungal proteins belonging to the BIG family. In Candida albicans BIG is required for normal beta-1,6-glucan synthesis, hyphal morphogenesis, adhesion and virulence [].
Probab=22.25 E-value=1.1e+02 Score=26.01 Aligned_cols=18 Identities=17% Similarity=0.408 Sum_probs=7.4
Q ss_pred hHHHHHHHHHHHHHHHHH
Q 026774 209 CMCMLLAVIGIVVLVVVI 226 (233)
Q Consensus 209 ~~~i~~l~i~lv~l~v~i 226 (233)
|+++++.++++.+|++.+
T Consensus 260 ~mglii~~~ll~IL~~gl 277 (282)
T PF05827_consen 260 WMGLIISLVLLSILYVGL 277 (282)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334444444444444433
No 332
>PF03935 SKN1: Beta-glucan synthesis-associated protein (SKN1); InterPro: IPR005629 This family consists of the beta-glucan synthesis-associated proteins KRE6 and SKN1. Beta1,6-Glucan is a key component of the yeast cell wall, interconnecting cell wall proteins, beta1,3-glucan, and chitin. It has been postulated that the synthesis of beta1,6-glucan begins in the endoplasmic reticulum with the formation of protein-bound primer structures and that these primer structures are extended in the Golgi complex by two putative glucosyltransferases that are functionally redundant, Kre6 and Skn1. This is followed by maturation steps at the cell surface and by coupling to other cell wall macromolecules [].
Probab=22.13 E-value=68 Score=29.88 Aligned_cols=21 Identities=19% Similarity=0.425 Sum_probs=12.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHH
Q 026774 209 CMCMLLAVIGIVVLVVVIYML 229 (233)
Q Consensus 209 ~~~i~~l~i~lv~l~v~i~~~ 229 (233)
..|+++|++.+++||++..++
T Consensus 45 lg~LilL~lGLL~LFigyPIl 65 (504)
T PF03935_consen 45 LGGLILLILGLLMLFIGYPIL 65 (504)
T ss_pred HHHHHHHHHHHHHHHHHhhhe
Confidence 346677766677776654443
No 333
>KOG2546 consensus Abl interactor ABI-1, contains SH3 domain [Signal transduction mechanisms; Cytoskeleton]
Probab=22.03 E-value=4.8e+02 Score=23.93 Aligned_cols=47 Identities=13% Similarity=0.121 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHH
Q 026774 145 EGLEKLEETVVSTKHIALAVNEELDLHTRLIDDLDQHVDVTDSRLRR 191 (233)
Q Consensus 145 ~~l~~l~~~v~~l~~~~~~i~~ev~~Q~~~ld~i~~~vd~~~~~l~~ 191 (233)
.....|++..=.+..++.+....++.|...|..++..|+...+.+..
T Consensus 55 ~ttQslasvaYqIN~la~~~l~mL~lQ~~~L~~mEs~vn~isq~V~i 101 (483)
T KOG2546|consen 55 YTTQSLASVAYQINTLAGHALRMLDLQAPQLRYMESQVNHISQTVDI 101 (483)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhee
Confidence 34456666666777888888899999999999999999998887754
No 334
>PF02932 Neur_chan_memb: Neurotransmitter-gated ion-channel transmembrane region ion channel family signature gamma-aminobutyric acid (GABA) receptor signature nicotinic acetylcholine receptor signature; InterPro: IPR006029 Neurotransmitter ligand-gated ion channels are transmembrane receptor-ion channel complexes that open transiently upon binding of specific ligands, allowing rapid transmission of signals at chemical synapses [, ]. Five of these ion channel receptor families have been shown to form a sequence-related superfamily: Nicotinic acetylcholine receptor (AchR), an excitatory cation channel in vertebrates and invertebrates; in vertebrate motor endplates it is composed of alpha, beta, gamma and delta/epsilon subunits; in neurons it is composed of alpha and non-alpha (or beta) subunits []. Glycine receptor, an inhibitory chloride ion channel composed of alpha and beta subunits []. Gamma-aminobutyric acid (GABA) receptor, an inhibitory chloride ion channel; at least four types of subunits (alpha, beta, gamma and delta) are known []. Serotonin 5HT3 receptor, of which there are seven major types (5HT3-5HT7) []. Glutamate receptor, an excitatory cation channel of which at least three types have been described (kainate, N-methyl-D-aspartate (NMDA) and quisqualate) []. These receptors possess a pentameric structure (made up of varying subunits), surrounding a central pore. All known sequences of subunits from neurotransmitter-gated ion-channels are structurally related. They are composed of a large extracellular glycosylated N-terminal ligand-binding domain, followed by three hydrophobic transmembrane regions which form the ionic channel, followed by an intracellular region of variable length. A fourth hydrophobic region is found at the C-terminal of the sequence [, ]. This domain represents four transmembrane helices of a variety of neurotransmitter-gated ion-channels.; GO: 0006811 ion transport, 0016020 membrane; PDB: 1DXZ_A 3MRA_A 1EQ8_C 1OED_C 2PR9_P 1A11_A 1CEK_A 2BG9_E 2KSR_A 2K59_B ....
Probab=21.94 E-value=1.1e+02 Score=23.34 Aligned_cols=19 Identities=21% Similarity=0.581 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 026774 211 CMLLAVIGIVVLVVVIYML 229 (233)
Q Consensus 211 ~i~~l~i~lv~l~v~i~~~ 229 (233)
|.++++.+++.+.|+.|.+
T Consensus 64 ~~~~v~~~~~~~avv~~~~ 82 (237)
T PF02932_consen 64 CTMFVFSASLEFAVVVYNI 82 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred ccchhhhHHHHhhhhhhhh
Confidence 4444444444444444443
No 335
>COG5000 NtrY Signal transduction histidine kinase involved in nitrogen fixation and metabolism regulation [Signal transduction mechanisms]
Probab=21.59 E-value=3e+02 Score=26.64 Aligned_cols=52 Identities=17% Similarity=0.217 Sum_probs=28.5
Q ss_pred hHhHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHHHHHHHHHH
Q 026774 179 DQHVDVTDSRLRRVQKNLAILNKRTKGGCTCMCMLLAVIGIVVLVVVIYMLI 230 (233)
Q Consensus 179 ~~~vd~~~~~l~~~~~~l~~~~~~~~~~~~~~~i~~l~i~lv~l~v~i~~~~ 230 (233)
+..+-+.-..++.+..+-+.+-..-..-..++.+..+.++++++++.||+.+
T Consensus 248 ~~~v~~~~~~~~~a~~eY~~l~~~R~~lQ~~F~~~yl~~aLLvll~AIw~ai 299 (712)
T COG5000 248 DPKVAEHADLTEGAAAEYRELEAGRDGLQIAFALLYLSTALLVLLAAIWTAI 299 (712)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444445555555555554432222334455556667777777777755
No 336
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=21.51 E-value=6.3e+02 Score=23.10 Aligned_cols=45 Identities=22% Similarity=0.281 Sum_probs=21.5
Q ss_pred HHHHHHHHhhHhhhCCCCCCchhHHHHHHHHHHHHHHHHhHHHHHHHH
Q 026774 17 KLADDINGMISERSSMPASGPESQRHASAIRRKITILGTRLDSLQSLL 64 (233)
Q Consensus 17 ~~l~~i~~~i~~r~~~~~~~~e~~~~~~~Ir~~l~~l~~~l~~L~~~l 64 (233)
+.+..++..|.+.+... ....+....+...|..++.++..+++.+
T Consensus 38 ~~l~q~q~ei~~~~~~i---~~~~~~~~kL~~~lk~~e~~i~~~~~ql 82 (420)
T COG4942 38 KQLKQIQKEIAALEKKI---REQQDQRAKLEKQLKSLETEIASLEAQL 82 (420)
T ss_pred HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45556666655433210 1122334445555555555555555554
No 337
>PF04728 LPP: Lipoprotein leucine-zipper; InterPro: IPR006817 This repeating sequence, NAKVDQLSNDV, is found in the enterobacterial outer membrane lipoprotein LPP. The outer membrane lipoprotein is the most abundant protein in an Escherichia coli cell. The messenger RNA for the lipoprotein of the E. coli outer membrane codes for a putative precursor, prolipoprotein, which has 20 additional amino acid residues extending from the amino terminus of the lipoprotein.; GO: 0019867 outer membrane; PDB: 1JCC_A 2GUV_C 2GUS_A 1JCD_A 1KFM_A 1T8Z_D 1KFN_A 1EQ7_A.
Probab=21.41 E-value=2.3e+02 Score=18.02 Aligned_cols=37 Identities=16% Similarity=0.233 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026774 143 QDEGLEKLEETVVSTKHIALAVNEELDLHTRLIDDLD 179 (233)
Q Consensus 143 qd~~l~~l~~~v~~l~~~~~~i~~ev~~Q~~~ld~i~ 179 (233)
....++.|++-|..++.=.....+|...-|.-||++-
T Consensus 15 L~~kvdqLs~dv~~lr~~v~~ak~EAaRAN~RlDN~a 51 (56)
T PF04728_consen 15 LNSKVDQLSSDVNALRADVQAAKEEAARANQRLDNIA 51 (56)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 3456677777777777777777777777777777653
No 338
>PF10805 DUF2730: Protein of unknown function (DUF2730); InterPro: IPR020269 This entry represents a family of various hypothetical proteins. The proteins, which include HI1498 and Gp25, from phage Mu, are currently uncharacterised.
Probab=21.34 E-value=3.2e+02 Score=19.57 Aligned_cols=48 Identities=17% Similarity=0.195 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHhHhHHHH
Q 026774 138 QIMREQDEGLEKLEETVVST--KHIALAVNEELDLHTRLIDDLDQHVDVT 185 (233)
Q Consensus 138 ~~~~~qd~~l~~l~~~v~~l--~~~~~~i~~ev~~Q~~~ld~i~~~vd~~ 185 (233)
+.+...|..++.++..+..+ +.=...+..++.+.+.-++.++..++..
T Consensus 42 ~~~~~~~~Rl~~lE~~l~~LPt~~dv~~L~l~l~el~G~~~~l~~~l~~v 91 (106)
T PF10805_consen 42 ERLDEHDRRLQALETKLEHLPTRDDVHDLQLELAELRGELKELSARLQGV 91 (106)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 34455667777777777776 6666666666655555555555554443
No 339
>PRK10525 cytochrome o ubiquinol oxidase subunit II; Provisional
Probab=21.26 E-value=41 Score=29.34 Aligned_cols=18 Identities=17% Similarity=0.353 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHhh
Q 026774 215 AVIGIVVLVVVIYMLIKY 232 (233)
Q Consensus 215 l~i~lv~l~v~i~~~~k~ 232 (233)
++|++++++.++|++.||
T Consensus 52 liv~i~V~~l~~~f~~ry 69 (315)
T PRK10525 52 LIVVIPAILMAVGFAWKY 69 (315)
T ss_pred HhhHHHHHHHHheeEEEE
Confidence 334444444566666554
No 340
>PF06738 DUF1212: Protein of unknown function (DUF1212); InterPro: IPR010619 This entry represents a predicted domain found within a number of hypothetical proteins of unknown function found in eukaryotes, bacteria and archaea. Some of these sequences are predicted to be membrane proteins.
Probab=21.21 E-value=3.4e+02 Score=21.26 Aligned_cols=23 Identities=9% Similarity=0.177 Sum_probs=13.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhc
Q 026774 181 HVDVTDSRLRRVQKNLAILNKRT 203 (233)
Q Consensus 181 ~vd~~~~~l~~~~~~l~~~~~~~ 203 (233)
++..-.-.++.+.++++++.+..
T Consensus 76 ~~~~~~~~~~ea~~~L~~I~~~~ 98 (193)
T PF06738_consen 76 RIVAGQLSLEEAIERLDEIDREP 98 (193)
T ss_pred HHhcCCCCHHHHHHHHHHHhhCC
Confidence 33334445566777777777764
No 341
>PF02346 Vac_Fusion: Chordopoxvirus fusion protein; InterPro: IPR003436 This is a family of viral fusion proteins from the Chordopoxvirinae. A 14kDa Vaccinia virus protein has been demonstrated to function as a viral fusion protein mediating cell fusion at endosmomal (low) pH []. The protein, found in the envelope fraction of the virions, is required for fusing the outermost of the two golgi-derived membranes enveloping the virus with the plasma membrane, and its subsequent release extracellularly. The N-terminal proximal region is essential for its fusion ability.; GO: 0019064 viral envelope fusion with host membrane, 0019031 viral envelope
Probab=21.18 E-value=2.4e+02 Score=18.03 Aligned_cols=49 Identities=12% Similarity=0.184 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHH
Q 026774 148 EKLEETVVSTKHIALAVNEELDLHTRLIDDLDQHVDVTDSRLRRVQKNL 196 (233)
Q Consensus 148 ~~l~~~v~~l~~~~~~i~~ev~~Q~~~ld~i~~~vd~~~~~l~~~~~~l 196 (233)
..+..-+..|...+..+-+.-..+++-++++|.+.|.....+-...+++
T Consensus 4 k~~~~rl~~Lek~~~~~~~~c~~~~~~i~RLE~H~ETlRk~mv~L~kKi 52 (57)
T PF02346_consen 4 KDIEERLMVLEKDFRNAIKCCKENSEAIKRLEHHIETLRKYMVILAKKI 52 (57)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3455555566666777777777888888888888887777665555443
No 342
>PF04844 Ovate: Transcriptional repressor, ovate; InterPro: IPR006458 This group of sequences contain an uncharacterised domain of about 70 residues found exclusively in plants, generally toward the C terminus of proteins of 200 to 350 amino acids in length. At least 14 such proteins are found in Arabidopsis thaliana (Mouse-ear cress). Other regions of these proteins tend to consist largely of low-complexity sequence. Function is not known.
Probab=21.18 E-value=1.1e+02 Score=19.61 Aligned_cols=18 Identities=11% Similarity=0.311 Sum_probs=15.0
Q ss_pred CCCcHHHHHHHHHHHHHH
Q 026774 4 ASDSWIKEYNEAIKLADD 21 (233)
Q Consensus 4 ~~D~~~~~~~ev~~~l~~ 21 (233)
|.|||.+.++.+.+.+..
T Consensus 1 S~DP~~DFr~SM~EMI~~ 18 (59)
T PF04844_consen 1 SSDPYEDFRESMVEMIEE 18 (59)
T ss_pred CCCHHHHHHHHHHHHHHH
Confidence 579999999999887754
No 343
>PF06422 PDR_CDR: CDR ABC transporter; InterPro: IPR010929 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). In yeast, the PDR and CDR ABC transporters display extensive sequence homology, and confer resistance to several anti-fungal compounds by actively transporting their substrates out of the cell. These transporters have two homologous halves, each with an N-terminal intracellular hydrophilic region that contains an ATP-binding site, followed by a C-terminal membrane-associated region containing six transmembrane segments []. This entry represents a domain of the PDR/CDR ABC transporter comprising extracellular loop 3, transmembrane segment 6 and a linker region.; GO: 0005524 ATP binding, 0042626 ATPase activity, coupled to transmembrane movement of substances, 0006810 transport, 0016021 integral to membrane
Probab=21.00 E-value=1.4e+02 Score=21.20 Aligned_cols=16 Identities=6% Similarity=0.048 Sum_probs=6.8
Q ss_pred hHHHHHHHHHHHHHHH
Q 026774 209 CMCMLLAVIGIVVLVV 224 (233)
Q Consensus 209 ~~~i~~l~i~lv~l~v 224 (233)
.|-=+-++++++++++
T Consensus 48 ~WRN~GIli~f~i~f~ 63 (103)
T PF06422_consen 48 RWRNFGILIAFWIFFI 63 (103)
T ss_pred hhhhHHHHHHHHHHHH
Confidence 3333444444444444
No 344
>PF05008 V-SNARE: Vesicle transport v-SNARE protein N-terminus; InterPro: IPR007705 V-SNARE proteins are required for protein traffic between eukaryotic organelles. The v-SNAREs on transport vesicles interact with t-SNAREs on target membranes in order to facilitate this []. This domain is the N-terminal half of the V-Snare proteins. ; GO: 0006886 intracellular protein transport, 0016020 membrane; PDB: 2V8S_V 1VCS_A 3ONL_C 3ONJ_A 2QYW_A.
Probab=20.93 E-value=2.6e+02 Score=18.40 Aligned_cols=58 Identities=14% Similarity=0.137 Sum_probs=32.5
Q ss_pred CcHHHHHHHHHHHHHHHHHhhHhhhCCCCCCchhHHHHHHHHHHHHHHHHhHHHHHHHHh
Q 026774 6 DSWIKEYNEAIKLADDINGMISERSSMPASGPESQRHASAIRRKITILGTRLDSLQSLLS 65 (233)
Q Consensus 6 D~~~~~~~ev~~~l~~i~~~i~~r~~~~~~~~e~~~~~~~Ir~~l~~l~~~l~~L~~~l~ 65 (233)
+.-.....++...+.++...|.+-+--..+.| ......+...+...+.++..|+..++
T Consensus 21 ~~r~~~i~~~e~~l~ea~~~l~qMe~E~~~~p--~s~r~~~~~kl~~yr~~l~~lk~~l~ 78 (79)
T PF05008_consen 21 EQRKSLIREIERDLDEAEELLKQMELEVRSLP--PSERNQYKSKLRSYRSELKKLKKELK 78 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCTS---HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC--HHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 34445556667777777777654442111112 23346666667777777777766553
No 345
>COG2149 Predicted membrane protein [Function unknown]
Probab=20.88 E-value=2.9e+02 Score=20.46 Aligned_cols=11 Identities=9% Similarity=-0.139 Sum_probs=5.2
Q ss_pred HHHHHHHhcCC
Q 026774 195 NLAILNKRTKG 205 (233)
Q Consensus 195 ~l~~~~~~~~~ 205 (233)
++.+.+++...
T Consensus 80 ~~~~amrr~~~ 90 (120)
T COG2149 80 RVERAMRRGFY 90 (120)
T ss_pred HHHHHHHcCCC
Confidence 34455555444
No 346
>PRK02919 oxaloacetate decarboxylase subunit gamma; Provisional
Probab=20.86 E-value=1.6e+02 Score=20.25 Aligned_cols=13 Identities=15% Similarity=0.291 Sum_probs=5.0
Q ss_pred HHHHHHHHHHHHh
Q 026774 219 IVVLVVVIYMLIK 231 (233)
Q Consensus 219 lv~l~v~i~~~~k 231 (233)
+.+|++++=++.|
T Consensus 25 L~lLI~~i~~ms~ 37 (82)
T PRK02919 25 LFLLIFAIRGMSA 37 (82)
T ss_pred HHHHHHHHHHHHH
Confidence 3333333333333
No 347
>PTZ00208 65 kDa invariant surface glycoprotein; Provisional
Probab=20.82 E-value=1.1e+02 Score=27.60 Aligned_cols=23 Identities=22% Similarity=0.364 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 026774 152 ETVVSTKHIALAVNEELDLHTRL 174 (233)
Q Consensus 152 ~~v~~l~~~~~~i~~ev~~Q~~~ 174 (233)
+.+.-.-+.|..++..|+++..+
T Consensus 283 d~~~g~~n~a~av~~~~~~~kpl 305 (436)
T PTZ00208 283 DAMLGYANTAYAVNTKVEQEKPL 305 (436)
T ss_pred HHHHHHHHHHHHHhhhhhcCCCH
Confidence 35555666788888888766543
No 348
>PF02970 TBCA: Tubulin binding cofactor A; InterPro: IPR004226 The folding pathway of tubulins includes highly specific interactions with a series of cofactors (A, B, C, D and E) after they are released from the eukaryotic chaperonin CCT. Cofactors A and D capture and stabilise tubulin in a quasi-native conformation. Cofactor E binds to the cofactor D-tubulin complex, and interaction with cofactor C then causes the release of tubulin poypeptides in the native state. This family is the tubulin-specific chaperone A.; GO: 0051082 unfolded protein binding, 0007021 tubulin complex assembly, 0005874 microtubule; PDB: 3MXZ_A 1QSD_A 1H7C_A.
Probab=20.66 E-value=3e+02 Score=19.07 Aligned_cols=57 Identities=11% Similarity=0.175 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHhcC
Q 026774 147 LEKLEETVVSTKHIALAVNEELDLHTRLIDDLDQHVDVTDSRLRRVQKNLAILNKRTK 204 (233)
Q Consensus 147 l~~l~~~v~~l~~~~~~i~~ev~~Q~~~ld~i~~~vd~~~~~l~~~~~~l~~~~~~~~ 204 (233)
+..-...+..++.-+.+- -+|..|.++|+.-..-+-.+..+|..+...|..++....
T Consensus 23 ~~~q~~rle~~k~~~~de-~~iKkq~~vl~Et~~mipd~~~RL~~a~~~L~~~l~~~~ 79 (90)
T PF02970_consen 23 VEEQEARLEKMKAEGEDE-YDIKKQEEVLEETKMMIPDCQQRLEKAVEDLEEFLEEEE 79 (90)
T ss_dssp HHHHHHHHHHHHHCTTSH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCcH-HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHCc
Confidence 333444444445444432 368899999999999999999999999999999887643
No 349
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=20.51 E-value=7.1e+02 Score=23.29 Aligned_cols=27 Identities=15% Similarity=0.412 Sum_probs=19.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 026774 75 EKEMNRRKDMLANLRSKVNQMASTLNM 101 (233)
Q Consensus 75 ~~E~~~R~~~~~~l~~~l~~l~~~~~~ 101 (233)
..|+......+..|+.+.+.|...++.
T Consensus 336 ~~eie~kEeei~~L~~~~d~L~~q~~k 362 (622)
T COG5185 336 KSEIELKEEEIKALQSNIDELHKQLRK 362 (622)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHh
Confidence 466777777888888888888777653
No 350
>PF02419 PsbL: PsbL protein; InterPro: IPR003372 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbL found in PSII. PsbL is located in a gene cluster with PsbE, PsbF and PsbJ (PsbEFJL). Both PsbL and PsbJ (IPR002682 from INTERPRO) are essential for proper assembly of the OEC. Mutations in PsbL prevent the formation of both PSII core dimers and PSII-light harvesting complex []. In addition, both PsbL and PsbJ are involved in the unidirectional flow of electrons, where PsbJ regulates the forward electron flow from D2 (Qa) to the plastoquinone pool, and PsbL prevents the reduction of PSII by back electron flow from plastoquinol protecting PSII from photo-inactivation [].; GO: 0015979 photosynthesis, 0009523 photosystem II, 0009539 photosystem II reaction center, 0016020 membrane; PDB: 3A0H_L 3A0B_l 3ARC_l 1S5L_l 2AXT_l 3BZ2_L 4FBY_L 3PRQ_L 3PRR_L 3KZI_L ....
Probab=20.47 E-value=1.9e+02 Score=16.63 Aligned_cols=12 Identities=17% Similarity=0.393 Sum_probs=5.0
Q ss_pred HHHHHHHHHHHH
Q 026774 217 IGIVVLVVVIYM 228 (233)
Q Consensus 217 i~lv~l~v~i~~ 228 (233)
|+++.+++--|+
T Consensus 24 ifvl~vLFssyf 35 (37)
T PF02419_consen 24 IFVLAVLFSSYF 35 (37)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHhhhhh
Confidence 344444444443
No 351
>PRK08307 stage III sporulation protein SpoAB; Provisional
Probab=20.32 E-value=4.3e+02 Score=20.67 Aligned_cols=23 Identities=9% Similarity=0.120 Sum_probs=11.1
Q ss_pred HHHHHHHH-HHHHHHHHHHHHhHh
Q 026774 159 HIALAVNE-ELDLHTRLIDDLDQH 181 (233)
Q Consensus 159 ~~~~~i~~-ev~~Q~~~ld~i~~~ 181 (233)
+.|..+|. .++.|.+.++-.-.+
T Consensus 113 ~lg~~LG~~D~e~Q~k~i~L~~e~ 136 (171)
T PRK08307 113 QFGKTLGQSDREGQQKHIRLALEH 136 (171)
T ss_pred HHHHHHCcCcHHHHHHHHHHHHHH
Confidence 34444432 366666666543333
No 352
>TIGR01010 BexC_CtrB_KpsE polysaccharide export inner-membrane protein, BexC/CtrB/KpsE family. This family contains gamma proteobacterial proteins involved in capsule polysaccharide export.
Probab=20.29 E-value=5.9e+02 Score=22.26 Aligned_cols=26 Identities=12% Similarity=0.109 Sum_probs=15.9
Q ss_pred HHHHHhHhHHHHHHHHHHHHHHHHHH
Q 026774 174 LIDDLDQHVDVTDSRLRRVQKNLAIL 199 (233)
Q Consensus 174 ~ld~i~~~vd~~~~~l~~~~~~l~~~ 199 (233)
-+.++..+++.+......+..+++.+
T Consensus 279 ~~~~L~re~~~a~~~y~~~l~r~~~a 304 (362)
T TIGR01010 279 DYQRLVLQNELAQQQLKAALTSLQQT 304 (362)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566666666666666666555543
No 353
>COG4499 Predicted membrane protein [Function unknown]
Probab=20.25 E-value=2.1e+02 Score=25.79 Aligned_cols=12 Identities=33% Similarity=0.625 Sum_probs=5.6
Q ss_pred HHHHHHhHhHHH
Q 026774 173 RLIDDLDQHVDV 184 (233)
Q Consensus 173 ~~ld~i~~~vd~ 184 (233)
+-+|+|-.=++.
T Consensus 185 ~Tld~l~e~i~e 196 (434)
T COG4499 185 ETLDDLAEFIDE 196 (434)
T ss_pred hhHHHHHHHHHH
Confidence 344455444444
No 354
>PF10140 YukC: WXG100 protein secretion system (Wss), protein YukC; InterPro: IPR018778 Members of this family are associated with type VII secretion of WXG100 family targets in the Firmicutes, but not in the Actinobacteria. This protein is designated YukC in Bacillus subtilis and EssB is Staphylococcus aureus. ; PDB: 4ANN_A.
Probab=20.19 E-value=52 Score=29.30 Aligned_cols=18 Identities=17% Similarity=0.458 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 026774 211 CMLLAVIGIVVLVVVIYM 228 (233)
Q Consensus 211 ~i~~l~i~lv~l~v~i~~ 228 (233)
.+++++++++++++++|+
T Consensus 198 ~i~l~~l~v~l~~~~~Y~ 215 (359)
T PF10140_consen 198 SIGLSILLVLLLIPLGYL 215 (359)
T ss_dssp ------------------
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 334443344444444443
No 355
>PF11446 DUF2897: Protein of unknown function (DUF2897); InterPro: IPR021550 This is a bacterial family of uncharacterised proteins.
Probab=20.05 E-value=1.5e+02 Score=18.67 Aligned_cols=13 Identities=15% Similarity=0.585 Sum_probs=5.4
Q ss_pred hHHHHHHHHHHHH
Q 026774 209 CMCMLLAVIGIVV 221 (233)
Q Consensus 209 ~~~i~~l~i~lv~ 221 (233)
.|+|+++++++|+
T Consensus 5 ~wlIIviVlgvIi 17 (55)
T PF11446_consen 5 PWLIIVIVLGVII 17 (55)
T ss_pred hhHHHHHHHHHHH
Confidence 3444444433333
No 356
>smart00397 t_SNARE Helical region found in SNAREs. All alpha-helical motifs that form twisted and parallel four-helix bundles in target soluble N-ethylmaleimide-sensitive factor (NSF) attachment protein (SNAP) receptor proteins. This motif found in "Q-SNAREs".
Probab=20.01 E-value=2.3e+02 Score=17.38 Aligned_cols=51 Identities=18% Similarity=0.306 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHH
Q 026774 140 MREQDEGLEKLEETVVSTKHIALAVNEELDLHTRLIDDLDQHVDVTDSRLR 190 (233)
Q Consensus 140 ~~~qd~~l~~l~~~v~~l~~~~~~i~~ev~~Q~~~ld~i~~~vd~~~~~l~ 190 (233)
+......+..+......+...-..=+..++.=..-++.....+..+..++.
T Consensus 14 l~~l~~~i~~l~~l~~~i~~~v~~Q~~~ld~i~~~~d~~~~~~~~~~~~l~ 64 (66)
T smart00397 14 LEQLEKSIGELKQIFLDMGTELEEQGEQLDRIEDNVDDADVNLKKANKRLK 64 (66)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHh
Confidence 333333444444444444444333344444444445555555555554443
Done!