Query 026774
Match_columns 233
No_of_seqs 150 out of 1333
Neff 8.5
Searched_HMMs 29240
Date Mon Mar 25 21:50:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026774.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/026774hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2nps_D Syntaxin-6; vesicle fus 99.7 8E-18 2.7E-22 116.4 7.9 76 132-207 6-81 (82)
2 3hd7_B Syntaxin-1A; membrane p 99.7 1E-15 3.4E-20 111.4 11.9 79 138-216 14-94 (109)
3 1gl2_D Syntaxin 8, vesicle tra 99.6 1E-15 3.4E-20 101.2 7.4 64 138-201 2-65 (65)
4 1n7s_D SNAP-25A; neuronal snar 99.6 2.1E-14 7.2E-19 95.1 8.8 62 139-200 4-65 (66)
5 4dnd_A Syntaxin-10, SYN10; str 99.5 3.6E-14 1.2E-18 105.9 10.2 98 3-100 24-129 (130)
6 1sfc_D Protein (SNAP-25B), pro 99.5 4.5E-14 1.5E-18 98.5 9.2 65 138-202 22-86 (87)
7 1l4a_D S-SNAP25 fusion protein 99.5 1.1E-13 3.6E-18 96.4 7.1 65 138-202 23-87 (87)
8 1dn1_B Syntaxin 1A, syntaxin b 99.5 1.1E-13 3.8E-18 116.2 7.6 205 5-211 30-266 (267)
9 3b5n_D Protein transport prote 99.4 5.9E-13 2E-17 87.0 9.1 60 139-198 4-63 (64)
10 1jth_B Syntaxin 1A; coiled-coi 99.4 7.8E-12 2.7E-16 85.2 10.5 73 139-211 4-76 (77)
11 2xhe_B Syntaxin1; exocytosis, 99.3 1.6E-12 5.3E-17 109.9 4.8 199 6-205 44-277 (279)
12 2nps_B Syntaxin 13, vesicle-as 99.2 6.6E-11 2.3E-15 79.2 9.3 68 142-209 3-70 (71)
13 3b5n_B Protein SSO1; snare com 99.2 4.7E-10 1.6E-14 74.6 10.6 66 139-204 4-69 (69)
14 1sfc_B Protein (syntaxin 1A), 99.1 8.8E-10 3E-14 76.0 10.9 68 138-205 14-81 (83)
15 1n7s_B Syntaxin 1A; neuronal s 99.0 2.1E-09 7.3E-14 71.2 9.7 62 139-200 6-67 (68)
16 1gl2_B Syntaxin 7; membrane pr 99.0 1.2E-09 4.1E-14 71.7 8.3 62 139-200 3-64 (65)
17 2c5k_T Syntaxin TLG1, T-snare 99.0 1.8E-09 6.3E-14 76.0 8.7 92 1-100 1-92 (95)
18 3c98_B Syntaxin-1A; protein co 98.2 2.2E-06 7.5E-11 71.2 6.6 202 6-209 43-276 (279)
19 1fio_A SSO1 protein; four heli 97.7 5.7E-05 2E-09 59.9 5.6 155 6-172 5-196 (196)
20 3hd7_A Vesicle-associated memb 97.3 0.0031 1.1E-07 43.6 9.6 42 146-187 6-47 (91)
21 1ez3_A Syntaxin-1A; three heli 97.2 0.0034 1.2E-07 45.9 9.6 96 6-102 8-114 (127)
22 1n7s_C SNAP-25A; neuronal snar 97.0 0.021 7.3E-07 38.3 11.5 65 136-200 11-78 (79)
23 1s94_A S-syntaxin; three helix 96.9 0.0043 1.5E-07 48.4 8.6 96 7-103 40-146 (180)
24 3hd7_B Syntaxin-1A; membrane p 96.9 0.024 8.1E-07 40.5 11.5 78 138-216 21-98 (109)
25 1nhl_A Synaptosomal-associated 96.6 0.022 7.6E-07 35.2 8.3 47 151-197 6-52 (54)
26 2nps_C Vesicle transport throu 96.0 0.18 6.2E-06 33.8 11.4 67 138-204 12-78 (81)
27 3b5n_C Protein transport prote 95.9 0.17 5.7E-06 33.0 10.2 53 149-201 16-68 (70)
28 1gl2_C VTI1B, vesicle transpor 95.9 0.047 1.6E-06 35.1 7.5 58 143-200 7-64 (65)
29 1l4a_C S-SNAP25 fusion protein 95.6 0.055 1.9E-06 36.5 7.2 53 147-199 29-81 (83)
30 2kog_A Vesicle-associated memb 94.6 0.0034 1.1E-07 45.7 -1.2 17 168-184 56-72 (119)
31 3hd7_A Vesicle-associated memb 92.6 1.7 5.7E-05 29.6 11.3 18 182-199 45-62 (91)
32 1vcs_A Vesicle transport throu 90.8 3 0.0001 29.0 9.8 91 3-101 2-92 (102)
33 2qyw_A Vesicle transport throu 90.6 3.1 0.00011 28.9 10.5 87 6-99 15-101 (102)
34 2k48_A Nucleoprotein; viral pr 85.4 4.1 0.00014 28.2 7.0 52 47-100 48-99 (107)
35 2ic6_A Nucleocapsid protein; h 82.1 7.9 0.00027 25.4 7.0 54 45-100 16-69 (78)
36 2dnx_A Syntaxin-12; snare, HAB 82.0 12 0.00042 27.0 9.7 93 8-100 12-108 (130)
37 4fi5_A Nucleoprotein; structur 80.9 7.7 0.00026 27.2 7.0 61 39-101 24-87 (113)
38 2ic9_A Nucleocapsid protein; h 77.7 12 0.00041 25.5 7.0 56 44-101 15-70 (96)
39 2lk9_A Bone marrow stromal ant 76.4 2.6 8.8E-05 22.9 2.8 20 212-231 11-30 (35)
40 2lx0_A Membrane fusion protein 73.7 4.8 0.00016 20.8 3.2 17 217-233 13-29 (32)
41 3p8c_F ABL interactor 2; actin 72.4 28 0.00096 26.1 10.5 52 145-196 54-105 (159)
42 2l8s_A Integrin alpha-1; trans 70.5 6.8 0.00023 23.9 4.0 23 209-231 9-32 (54)
43 2knc_A Integrin alpha-IIB; tra 69.5 7.1 0.00024 23.8 3.9 24 208-231 11-35 (54)
44 3efg_A Protein SLYX homolog; x 63.3 28 0.00097 22.7 6.6 49 144-192 13-61 (78)
45 2k1a_A Integrin alpha-IIB; sin 62.8 13 0.00045 21.3 4.0 24 208-231 9-33 (42)
46 2kv5_A FST, putative uncharact 58.4 12 0.0004 20.2 3.0 22 212-233 4-25 (33)
47 3j1r_A Archaeal adhesion filam 56.1 13 0.00045 18.7 2.8 16 213-228 8-23 (26)
48 2rdd_B UPF0092 membrane protei 55.8 9.8 0.00034 21.1 2.6 6 224-229 14-19 (37)
49 1b9u_A Protein (ATP synthase); 54.9 16 0.00054 19.5 3.4 15 219-233 11-25 (34)
50 3ghg_A Fibrinogen alpha chain; 54.0 26 0.00091 31.3 6.3 16 168-183 140-155 (562)
51 3arc_T Photosystem II reaction 51.5 13 0.00044 20.0 2.4 15 213-227 8-22 (32)
52 3ghg_A Fibrinogen alpha chain; 50.4 1.4E+02 0.0048 26.8 11.0 50 156-205 114-163 (562)
53 3nmd_A CGMP dependent protein 49.1 50 0.0017 21.2 6.7 23 168-190 35-57 (72)
54 1deq_A Fibrinogen (alpha chain 46.8 1.3E+02 0.0043 25.9 9.1 19 42-60 61-79 (390)
55 2l34_A TYRO protein tyrosine k 46.1 19 0.00066 19.4 2.7 16 216-231 17-32 (33)
56 3onj_A T-snare VTI1; helix, HA 46.0 66 0.0023 21.7 10.8 83 12-100 7-90 (97)
57 2v71_A Nuclear distribution pr 44.0 1.1E+02 0.0037 23.6 15.7 32 69-100 3-34 (189)
58 3vmt_A Monofunctional glycosyl 43.2 21 0.00071 29.2 3.7 9 222-230 51-59 (263)
59 2w1k_A Putative sortase; pilus 42.6 5.2 0.00018 32.5 0.0 26 207-232 223-248 (252)
60 1ic2_A Tropomyosin alpha chain 41.8 70 0.0024 20.7 11.4 59 145-203 20-78 (81)
61 1g6u_A Domain swapped dimer; d 39.1 51 0.0018 18.4 4.0 27 73-99 17-43 (48)
62 3u1c_A Tropomyosin alpha-1 cha 39.0 90 0.0031 21.2 9.5 57 145-201 23-79 (101)
63 3okq_A BUD site selection prot 37.7 1.2E+02 0.004 22.2 7.2 28 74-101 52-79 (141)
64 3vkg_A Dynein heavy chain, cyt 35.3 5.2E+02 0.018 28.9 17.4 56 140-202 2030-2085(3245)
65 2ww9_B Protein transport prote 34.8 24 0.00084 23.2 2.3 28 174-205 14-41 (80)
66 2f95_B Sensory rhodopsin II tr 34.1 21 0.00073 25.5 2.3 13 219-231 69-81 (163)
67 3hb3_B Cytochrome C oxidase su 34.0 36 0.0012 28.3 3.8 18 215-232 72-89 (298)
68 2dnx_A Syntaxin-12; snare, HAB 33.4 1.3E+02 0.0044 21.4 8.1 45 35-81 8-52 (130)
69 2nps_B Syntaxin 13, vesicle-as 33.0 91 0.0031 19.5 9.3 59 139-197 7-65 (71)
70 1m1j_B Fibrinogen beta chain; 32.8 2.6E+02 0.0088 24.7 11.7 58 140-197 102-159 (464)
71 3fym_A Putative uncharacterize 31.6 9.9 0.00034 27.2 0.0 7 73-79 17-23 (130)
72 1jth_B Syntaxin 1A; coiled-coi 31.5 1E+02 0.0035 19.6 10.0 61 138-198 10-70 (77)
73 1gl2_B Syntaxin 7; membrane pr 30.6 97 0.0033 19.1 8.3 56 138-193 9-64 (65)
74 3p8c_D Wiskott-aldrich syndrom 30.5 2.2E+02 0.0076 23.2 8.2 32 170-201 47-78 (279)
75 3u59_A Tropomyosin beta chain; 30.4 1.3E+02 0.0043 20.4 9.5 55 146-200 24-78 (101)
76 1rh5_B Preprotein translocase 30.0 65 0.0022 20.8 3.7 14 192-205 15-28 (74)
77 1sfc_A VAMP 2, protein (synapt 27.9 1.4E+02 0.0048 20.1 8.5 19 166-184 51-69 (96)
78 2dw3_A Intrinsic membrane prot 27.8 75 0.0026 20.6 3.7 18 216-233 37-54 (77)
79 3din_D Preprotein translocase 27.5 1.1E+02 0.0038 18.9 4.5 20 186-205 5-24 (65)
80 2k9j_B Integrin beta-3; transm 27.2 73 0.0025 18.1 3.2 10 222-231 23-32 (43)
81 3oja_A Leucine-rich immune mol 27.1 3E+02 0.01 23.7 12.0 63 138-200 421-483 (487)
82 3nmd_A CGMP dependent protein 26.8 1.3E+02 0.0044 19.3 5.4 21 76-96 47-67 (72)
83 1jdm_A Sarcolipin; helix, memb 26.8 51 0.0018 17.1 2.2 8 224-231 20-27 (31)
84 2akf_A Coronin-1A; coiled coil 25.7 78 0.0027 16.4 3.9 25 75-99 5-29 (32)
85 2l5g_B Putative uncharacterize 25.6 99 0.0034 17.6 4.2 29 174-202 10-38 (42)
86 1urq_A M-tomosyn isoform; tran 24.4 1.3E+02 0.0045 18.6 8.5 17 166-182 25-41 (63)
87 3oja_B Anopheles plasmodium-re 23.3 3.9E+02 0.013 23.6 11.9 62 144-205 522-583 (597)
88 1vf5_F Protein PET M; photosyn 22.9 1E+02 0.0035 16.8 3.9 8 225-232 22-29 (35)
89 3zrx_A AF1503 protein, osmolar 21.4 1.7E+02 0.0057 18.6 9.2 43 158-200 65-107 (115)
90 3b5n_B Protein SSO1; snare com 20.9 1.6E+02 0.0055 18.2 10.6 57 138-194 10-66 (69)
91 1pi7_A VPU protein, U ORF prot 20.8 1.1E+02 0.0038 16.8 3.0 7 222-228 17-23 (36)
92 3t98_B Nucleoporin NUP58/NUP45 20.7 2E+02 0.0068 19.3 6.4 59 40-98 11-73 (93)
93 1q90_M Cytochrome B6F complex 20.5 1.2E+02 0.0043 16.9 3.8 7 225-231 23-29 (39)
94 3tso_C RAB11 family-interactin 20.4 1.8E+02 0.0062 18.7 5.2 34 123-156 10-46 (75)
95 3mp7_B Preprotein translocase 20.0 1.6E+02 0.0056 18.1 4.1 11 195-205 14-24 (61)
96 2yev_B Cytochrome C oxidase su 25.3 22 0.00076 29.9 0.0 20 213-232 45-64 (337)
No 1
>2nps_D Syntaxin-6; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Homo sapiens}
Probab=99.73 E-value=8e-18 Score=116.37 Aligned_cols=76 Identities=25% Similarity=0.322 Sum_probs=61.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHhcCCCc
Q 026774 132 LVGFQRQIMREQDEGLEKLEETVVSTKHIALAVNEELDLHTRLIDDLDQHVDVTDSRLRRVQKNLAILNKRTKGGC 207 (233)
Q Consensus 132 ~~~~q~~~~~~qd~~l~~l~~~v~~l~~~~~~i~~ev~~Q~~~ld~i~~~vd~~~~~l~~~~~~l~~~~~~~~~~~ 207 (233)
.++.|++++++||+.|+.|+.+|.+||++|.+||+||+.||++||+|+++||+|..+|..+++++++++++++++|
T Consensus 6 ~~q~Q~~~~~eQD~~Ld~L~~~v~~LK~~a~~Ig~El~~Qn~lLd~l~~~~d~~~~~L~~~~~r~~~~~~~~~~~~ 81 (82)
T 2nps_D 6 SMTGGNNMGRMQDEQLELVSGSIGVLKNMSQRIGGELEEQAVMLEDFSHELESTQSRLDNVMKKLAKVSHMTSDRR 81 (82)
T ss_dssp ------------CCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcCC
Confidence 4577889999999999999999999999999999999999999999999999999999999999999999988765
No 2
>3hd7_B Syntaxin-1A; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_B 3ipd_B
Probab=99.66 E-value=1e-15 Score=111.40 Aligned_cols=79 Identities=13% Similarity=0.185 Sum_probs=69.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHhcCCC--chhHHHHHH
Q 026774 138 QIMREQDEGLEKLEETVVSTKHIALAVNEELDLHTRLIDDLDQHVDVTDSRLRRVQKNLAILNKRTKGG--CTCMCMLLA 215 (233)
Q Consensus 138 ~~~~~qd~~l~~l~~~v~~l~~~~~~i~~ev~~Q~~~ld~i~~~vd~~~~~l~~~~~~l~~~~~~~~~~--~~~~~i~~l 215 (233)
..++++++++..|+.++.+|+++|.+++..|.+|++++|+|++++++|..++..|+.+++++.+++++. |+|||++++
T Consensus 14 ~~i~eR~~eI~~Ie~~I~eL~~iF~dla~lV~eQge~Id~Ie~nv~~a~~~v~~g~~eL~kA~~yqk~~rkk~~i~l~~~ 93 (109)
T 3hd7_B 14 SEIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAVKYQSKARRKKIMIIICC 93 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcceehHHHH
Confidence 557788999999999999999999999999999999999999999999999999999999999987773 334444333
Q ss_pred H
Q 026774 216 V 216 (233)
Q Consensus 216 ~ 216 (233)
+
T Consensus 94 ~ 94 (109)
T 3hd7_B 94 V 94 (109)
T ss_dssp H
T ss_pred H
Confidence 3
No 3
>1gl2_D Syntaxin 8, vesicle transport V-snare protein VTI1-like 1; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Rattus norvegicus} SCOP: h.1.15.1
Probab=99.62 E-value=1e-15 Score=101.22 Aligned_cols=64 Identities=31% Similarity=0.569 Sum_probs=53.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHH
Q 026774 138 QIMREQDEGLEKLEETVVSTKHIALAVNEELDLHTRLIDDLDQHVDVTDSRLRRVQKNLAILNK 201 (233)
Q Consensus 138 ~~~~~qd~~l~~l~~~v~~l~~~~~~i~~ev~~Q~~~ld~i~~~vd~~~~~l~~~~~~l~~~~~ 201 (233)
+++++||+.|+.|+.+|++||++|.+||+||+.||++||+++++||++..+|..+++++.++.+
T Consensus 2 ~~~~eqD~~Ld~L~~~v~~lk~~a~~Ig~El~~Qn~lLd~l~~~~d~~~~~l~~~~~rl~~l~k 65 (65)
T 1gl2_D 2 SHMQEQDAGLDALSSIISRQKQMGQEIGNELDEQNEIIDDLANLVENTDEKLRTEARRVTLVDR 65 (65)
T ss_dssp ------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 5789999999999999999999999999999999999999999999999999999999998764
No 4
>1n7s_D SNAP-25A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 3rk2_D 3rk3_D 3rl0_D 1kil_D 3hd7_D* 3hd9_D 3ipd_D 1urq_D 1xtg_B
Probab=99.55 E-value=2.1e-14 Score=95.09 Aligned_cols=62 Identities=24% Similarity=0.406 Sum_probs=59.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHH
Q 026774 139 IMREQDEGLEKLEETVVSTKHIALAVNEELDLHTRLIDDLDQHVDVTDSRLRRVQKNLAILN 200 (233)
Q Consensus 139 ~~~~qd~~l~~l~~~v~~l~~~~~~i~~ev~~Q~~~ld~i~~~vd~~~~~l~~~~~~l~~~~ 200 (233)
+..+||+.|+.|+.+|++||++|.+||.||+.|+++||+|+.+||++..+|..+++++++++
T Consensus 4 ~e~eqD~~Ld~L~~~v~~lk~la~~ig~El~~Qn~~Ld~l~~~~d~~~~~l~~~~~rl~~ll 65 (66)
T 1n7s_D 4 RENEMDENLEQVSGIIGNLRHMALDMGNEIDTQNRQIDRIMEKADSNKTRIDEANQRATKML 65 (66)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHc
Confidence 45789999999999999999999999999999999999999999999999999999999875
No 5
>4dnd_A Syntaxin-10, SYN10; structural genomics, protein structure initiative, nysgrc, P biology, NEW YORK structural genomics research consortium; HET: MSE; 1.40A {Homo sapiens} PDB: 1lvf_A
Probab=99.54 E-value=3.6e-14 Score=105.89 Aligned_cols=98 Identities=17% Similarity=0.298 Sum_probs=84.9
Q ss_pred CCCCcHHHHHHHHHHHHHHHHHhhHhhhCCCCC-----CchhHHHHHHHHHHHHHHHHhHHHHHHHH---hcCCCCCCCC
Q 026774 3 SASDSWIKEYNEAIKLADDINGMISERSSMPAS-----GPESQRHASAIRRKITILGTRLDSLQSLL---SKLPGKQPIS 74 (233)
Q Consensus 3 s~~D~~~~~~~ev~~~l~~i~~~i~~r~~~~~~-----~~e~~~~~~~Ir~~l~~l~~~l~~L~~~l---~~~~~~~~~~ 74 (233)
|..|||+.+.++|.+.+..++..+.+|..+... +++...+..+|++.|..++++|.+|++.| +++|.+|+++
T Consensus 24 s~~DPF~~Vk~EVq~sl~~l~~l~~~w~~l~~~~~~~s~~E~~~~~~EL~~~l~sie~dLeDLe~sI~ivE~np~kF~l~ 103 (130)
T 4dnd_A 24 SLEDPFFVVRGEVQKAVNTARGLYQRWCELLQESAAVGREELDWTTNELRNGLRSIEWDLEDLEETIGIVEANPGKFKLP 103 (130)
T ss_dssp ---CCHHHHHHHHHHHHHHHHHHHHHHHHC---------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHCCC
T ss_pred CCCCCcHHHHHHHHHHHHHHHHHHHHHHHhhccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHhcCCC
Confidence 357999999999999999999999999865432 24677899999999999999999999997 4788899999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc
Q 026774 75 EKEMNRRKDMLANLRSKVNQMASTLN 100 (233)
Q Consensus 75 ~~E~~~R~~~~~~l~~~l~~l~~~~~ 100 (233)
+.|+.+|+.++..++.++.+++..++
T Consensus 104 ~~Ei~~Rr~fV~~~r~~I~~mk~~l~ 129 (130)
T 4dnd_A 104 AGDLQERKVFVERMREAVQEMKDHMV 129 (130)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999998764
No 6
>1sfc_D Protein (SNAP-25B), protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1
Probab=99.53 E-value=4.5e-14 Score=98.46 Aligned_cols=65 Identities=23% Similarity=0.379 Sum_probs=61.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHh
Q 026774 138 QIMREQDEGLEKLEETVVSTKHIALAVNEELDLHTRLIDDLDQHVDVTDSRLRRVQKNLAILNKR 202 (233)
Q Consensus 138 ~~~~~qd~~l~~l~~~v~~l~~~~~~i~~ev~~Q~~~ld~i~~~vd~~~~~l~~~~~~l~~~~~~ 202 (233)
.+.++||+.|+.|+.+|.+||++|.+||.||+.||++||+|+.+||++..+|..+++++++++++
T Consensus 22 ~~e~eqD~~Ld~Ls~~v~rLk~la~~ig~Eld~Qn~~Ld~i~~~~D~~~~rl~~~~~rl~~ll~k 86 (87)
T 1sfc_D 22 ARENEMDENLEQVSGIIGNLRHMALDMGNEIDTQNRQIDRIMEKADSNKTRIDEANQRATKMLGS 86 (87)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhC
Confidence 56789999999999999999999999999999999999999999999999999999999998774
No 7
>1l4a_D S-SNAP25 fusion protein; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1
Probab=99.47 E-value=1.1e-13 Score=96.36 Aligned_cols=65 Identities=15% Similarity=0.341 Sum_probs=60.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHh
Q 026774 138 QIMREQDEGLEKLEETVVSTKHIALAVNEELDLHTRLIDDLDQHVDVTDSRLRRVQKNLAILNKR 202 (233)
Q Consensus 138 ~~~~~qd~~l~~l~~~v~~l~~~~~~i~~ev~~Q~~~ld~i~~~vd~~~~~l~~~~~~l~~~~~~ 202 (233)
....+||+.|+.|+.+|++||++|.+||.||+.||++||+|+.+||++..+|..+++++++++++
T Consensus 23 ~~e~eqD~~Ld~ls~~l~rLk~mA~~mg~Eld~Qn~~LD~i~~~~D~~~~rl~~~n~r~~kll~k 87 (87)
T 1l4a_D 23 AREDDMENNMKEVSSMIGNLRNMAIDMGNEIGSQNRQVDRIQQKAESNESRIDEANKKATKLLKN 87 (87)
T ss_dssp HHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHTHHHHHHHHCC--
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 45678999999999999999999999999999999999999999999999999999999998763
No 8
>1dn1_B Syntaxin 1A, syntaxin binding protein 1; protein-protein complex, multi-subunit; 2.60A {Rattus norvegicus} PDB: 3c98_B
Probab=99.45 E-value=1.1e-13 Score=116.17 Aligned_cols=205 Identities=15% Similarity=0.192 Sum_probs=132.3
Q ss_pred CCcHHHHHHHHHHHHHHHHHhhHhhhCC-------CCCCc----hhHHHHHHHHHHHHHHHHhHHHHHHHHhcCCCCCCC
Q 026774 5 SDSWIKEYNEAIKLADDINGMISERSSM-------PASGP----ESQRHASAIRRKITILGTRLDSLQSLLSKLPGKQPI 73 (233)
Q Consensus 5 ~D~~~~~~~ev~~~l~~i~~~i~~r~~~-------~~~~~----e~~~~~~~Ir~~l~~l~~~l~~L~~~l~~~~~~~~~ 73 (233)
.+.|+...++|...+..|...+.+-..+ +...+ +...+..+|.+....+...|..|+..+...+.. +.
T Consensus 30 m~~F~~~v~~I~~~I~~I~~~v~~l~~l~~~~l~~~~~~~~~~~~l~~l~~~i~~~~~~i~~~Lk~l~~~~~~~~~~-~~ 108 (267)
T 1dn1_B 30 MDEFFEQVEEIRGFIDKIAENVEEVKRKHSAILASPNPDEKTKEELEELMSDIKKTANKVRSKLKSIEQSIEQEEGL-NR 108 (267)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc-CC
Confidence 3559999999999999999988644432 11111 233477888888888888888888776533221 23
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhcccccc--C-------C-CCcCCCCCCChhhhhc------ccCCCc-----hhH
Q 026774 74 SEKEMNRRKDMLANLRSKVNQMASTLNMSNFA--N-------R-DSLLGPEIKSADVMNR------ATGLDN-----QGL 132 (233)
Q Consensus 74 ~~~E~~~R~~~~~~l~~~l~~l~~~~~~~~~~--~-------r-~~l~~~~~~~~~e~~~------~~~~~~-----~~~ 132 (233)
++.+.+.|+.++..|..++.++...|+..+.. . | ..+.|+...+ ++.+. ...+.. .+.
T Consensus 109 ~~~e~Rirk~q~~~L~~~f~~~m~~yq~~Q~~y~e~~k~~i~Rq~~i~~~~~td-eeie~~ie~g~~~~f~q~~l~~~~~ 187 (267)
T 1dn1_B 109 SSADLRIRKTQHSTLSRKFVEVMSEYNATQSDYRERCKGRIQRQLEITGRTTTS-EELEDMLESGNPAIFASGIIMDSSI 187 (267)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCCH-HHHHHHHHTCSSCTTTTTCCCCSHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhccCCCCCH-HHHHHHHhCCcHHHHHHHHHHhhHH
Confidence 56788999999999999999999999754311 1 1 1133443211 11111 111110 111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHhcCCCchhHH
Q 026774 133 VGFQRQIMREQDEGLEKLEETVVSTKHIALAVNEELDLHTRLIDDLDQHVDVTDSRLRRVQKNLAILNKRTKGGCTCMC 211 (233)
Q Consensus 133 ~~~q~~~~~~qd~~l~~l~~~v~~l~~~~~~i~~ev~~Q~~~ld~i~~~vd~~~~~l~~~~~~l~~~~~~~~~~~~~~~ 211 (233)
....-..+++..+.+..|+.+|..|++||.+++..|.+|+++||+|+++|+.|..++..|+..+.++.++.++.+++.|
T Consensus 188 ~~~~l~~i~~R~~~i~~ie~~i~el~~if~dla~lV~~Qg~~id~Ie~nv~~a~~~v~~~~~~l~kA~~~q~~~rkk~~ 266 (267)
T 1dn1_B 188 SKQALSEIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAVKYQSKARRKKI 266 (267)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHCSGGGCHHHHHHTCCCCCCCCC------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccc
Confidence 1222346778889999999999999999999999999999999999999999999999999999999999888544444
No 9
>3b5n_D Protein transport protein SEC9; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae}
Probab=99.44 E-value=5.9e-13 Score=87.00 Aligned_cols=60 Identities=23% Similarity=0.355 Sum_probs=57.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHH
Q 026774 139 IMREQDEGLEKLEETVVSTKHIALAVNEELDLHTRLIDDLDQHVDVTDSRLRRVQKNLAI 198 (233)
Q Consensus 139 ~~~~qd~~l~~l~~~v~~l~~~~~~i~~ev~~Q~~~ld~i~~~vd~~~~~l~~~~~~l~~ 198 (233)
+-.++|+.|++|+..+++||++|.+||.||+.||++||+|+.++|.+..++..+++|+.+
T Consensus 4 ~E~e~D~nLd~l~~~~~rlk~ma~~mg~Eid~QN~~ldrI~~k~d~~d~ri~~~~~Rl~~ 63 (64)
T 3b5n_D 4 MELEIDRNLDQIQQVSNRLKKMALTTGKELDSQQKRLNNIEESTDDLDINLHMNTNRLAG 63 (64)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 457899999999999999999999999999999999999999999999999999999976
No 10
>1jth_B Syntaxin 1A; coiled-coil, polar layer, endocytosis-exocytosis complex; 2.00A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1hvv_A* 1urq_B
Probab=99.36 E-value=7.8e-12 Score=85.17 Aligned_cols=73 Identities=11% Similarity=0.131 Sum_probs=61.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHhcCCCchhHH
Q 026774 139 IMREQDEGLEKLEETVVSTKHIALAVNEELDLHTRLIDDLDQHVDVTDSRLRRVQKNLAILNKRTKGGCTCMC 211 (233)
Q Consensus 139 ~~~~qd~~l~~l~~~v~~l~~~~~~i~~ev~~Q~~~ld~i~~~vd~~~~~l~~~~~~l~~~~~~~~~~~~~~~ 211 (233)
.+++..+.+..|+.+|..|+++|.+++..|.+|+++||+|+++|+.|..++..|+..+.++.++.++.++++|
T Consensus 4 ~i~eR~~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~~L~kA~~~q~~~rkk~~ 76 (77)
T 1jth_B 4 EIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAVKYQSKARRKKI 76 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCccc
Confidence 4677889999999999999999999999999999999999999999999999999999999999888444433
No 11
>2xhe_B Syntaxin1; exocytosis, exocytosis complex, snare, neuro fusion, SM PROT choanoflagellates; 2.80A {Monosiga brevicollis}
Probab=99.29 E-value=1.6e-12 Score=109.90 Aligned_cols=199 Identities=11% Similarity=0.225 Sum_probs=122.8
Q ss_pred CcHHHHHHHHHHHHHHHHHhhHhhhCCC----C-CCc--------hhHHHHHHHHHHHHHHHHhHHHHHHHHhcCCCC--
Q 026774 6 DSWIKEYNEAIKLADDINGMISERSSMP----A-SGP--------ESQRHASAIRRKITILGTRLDSLQSLLSKLPGK-- 70 (233)
Q Consensus 6 D~~~~~~~ev~~~l~~i~~~i~~r~~~~----~-~~~--------e~~~~~~~Ir~~l~~l~~~l~~L~~~l~~~~~~-- 70 (233)
+.|+...++|...+..|...+.+...+. . ... +...++.+|...+..++..|..|+......+..
T Consensus 44 ~~F~~~~~~I~~~I~~i~~~l~~L~~l~~~~l~t~~~~~~~~~~~~ie~l~~~i~~~~~~i~~~lk~l~~~~~~~~~~~~ 123 (279)
T 2xhe_B 44 ADFFNRVKRIRDNIEDIEQAIEQVAQLHTESLVAVSKEDRDRLNEKLQDTMARISALGNKIRADLKQIEKENKRAQQEGT 123 (279)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSSSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccc
Confidence 3499999999999999999986555432 1 111 123577888888888888888888877544211
Q ss_pred -CCCCHH-HHHHHHHHHHHHHHHHHHHHHHhcccc--c-------cCCC-CcCCCCCCChhhhhcccCCCchhHH-H--H
Q 026774 71 -QPISEK-EMNRRKDMLANLRSKVNQMASTLNMSN--F-------ANRD-SLLGPEIKSADVMNRATGLDNQGLV-G--F 135 (233)
Q Consensus 71 -~~~~~~-E~~~R~~~~~~l~~~l~~l~~~~~~~~--~-------~~r~-~l~~~~~~~~~e~~~~~~~~~~~~~-~--~ 135 (233)
...++. +.+.|++++..|..++..+...|+..+ + ..|. ...++...+ ++.+.....++.+.+ + .
T Consensus 124 ~~~~~~~~e~r~~k~~~~~L~~~f~~~~~~Fq~~Q~~y~e~~k~~~~R~~~i~~~~~~~-ee~~~~~e~g~~~~f~q~~~ 202 (279)
T 2xhe_B 124 FEDGTVSTDLRIRQSQHSSLSRKFVKVMTRYNDVQAENKRRYGENVARQCRVVEPSLSD-DAIQKVIEHGTEGIFSGMRL 202 (279)
T ss_dssp CSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTSCCSSCCCCSS-TTHHHHHHHC----------
T ss_pred ccCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCH-HHHHHHHhCCchHHHHHHHH
Confidence 012233 778899999999999999999987532 0 1121 122222111 111100000000111 1 0
Q ss_pred H-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHhcCC
Q 026774 136 Q-----RQIMREQDEGLEKLEETVVSTKHIALAVNEELDLHTRLIDDLDQHVDVTDSRLRRVQKNLAILNKRTKG 205 (233)
Q Consensus 136 q-----~~~~~~qd~~l~~l~~~v~~l~~~~~~i~~ev~~Q~~~ld~i~~~vd~~~~~l~~~~~~l~~~~~~~~~ 205 (233)
+ -..+.+..+.|..|+.+|..|++||.+++..|.+|+++||+|+++|+.|..++..|+..|.++.++.++
T Consensus 203 ~~~~~~~~~i~eR~~eI~~Ie~~i~el~~if~dla~lV~~Qg~~id~Ie~nv~~~~~~v~~~~~~l~kA~~~qk~ 277 (279)
T 2xhe_B 203 EGAEAKLNEIRDRHKDIQQLERSLLELHEMFTDMSTLVASQGEMIDRIEFSVEQSHNYVKKATEQVVQARHYQES 277 (279)
T ss_dssp -------CTTTHHHHHHHHHHHHHHHHHHHHHHHHTTTTTSCSSTTCHHHHHHTCCCCC----------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHc
Confidence 0 123567789999999999999999999999999999999999999999999999999999999998765
No 12
>2nps_B Syntaxin 13, vesicle-associated membrane protein 4; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Rattus norvegicus}
Probab=99.23 E-value=6.6e-11 Score=79.23 Aligned_cols=68 Identities=15% Similarity=0.247 Sum_probs=62.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHhcCCCchh
Q 026774 142 EQDEGLEKLEETVVSTKHIALAVNEELDLHTRLIDDLDQHVDVTDSRLRRVQKNLAILNKRTKGGCTC 209 (233)
Q Consensus 142 ~qd~~l~~l~~~v~~l~~~~~~i~~ev~~Q~~~ld~i~~~vd~~~~~l~~~~~~l~~~~~~~~~~~~~ 209 (233)
+..+.+..|+.+|..|++||.+++..|.+|+++||+|+++|+.|...+..|+..|.++.++.++.++|
T Consensus 3 eR~~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~eL~kA~~~qk~~rk~ 70 (71)
T 2nps_B 3 MRETAIQQLEADILDVNQIFKDLAMMIHDQGDLIDSIEANVESSEVHVERASDQLQRAAYYQKKSRKK 70 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCC--
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC
Confidence 45688999999999999999999999999999999999999999999999999999999998875543
No 13
>3b5n_B Protein SSO1; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1
Probab=99.16 E-value=4.7e-10 Score=74.61 Aligned_cols=66 Identities=14% Similarity=0.152 Sum_probs=62.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHhcC
Q 026774 139 IMREQDEGLEKLEETVVSTKHIALAVNEELDLHTRLIDDLDQHVDVTDSRLRRVQKNLAILNKRTK 204 (233)
Q Consensus 139 ~~~~qd~~l~~l~~~v~~l~~~~~~i~~ev~~Q~~~ld~i~~~vd~~~~~l~~~~~~l~~~~~~~~ 204 (233)
.+.+..+.+..|+.+|..|+++|.+++..|.+|+++||+|+++|+.|..++..|+..++++.++.+
T Consensus 4 ~i~eR~~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~~L~kA~~~qr 69 (69)
T 3b5n_B 4 EVQARHQELLKLEKSMAELTQLFNDMEELVIEQQENVDVIDKNVEDAQLDVEQGVGHTDKAVKSAR 69 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 467788999999999999999999999999999999999999999999999999999999998753
No 14
>1sfc_B Protein (syntaxin 1A), protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1l4a_B
Probab=99.12 E-value=8.8e-10 Score=75.96 Aligned_cols=68 Identities=12% Similarity=0.177 Sum_probs=64.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHhcCC
Q 026774 138 QIMREQDEGLEKLEETVVSTKHIALAVNEELDLHTRLIDDLDQHVDVTDSRLRRVQKNLAILNKRTKG 205 (233)
Q Consensus 138 ~~~~~qd~~l~~l~~~v~~l~~~~~~i~~ev~~Q~~~ld~i~~~vd~~~~~l~~~~~~l~~~~~~~~~ 205 (233)
..+++..+.+..|+.+|..|++||.+++..|.+|+++||+|+++|+.|..++..|+..+.++.++.++
T Consensus 14 ~~i~eR~~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~eL~kA~~~qk~ 81 (83)
T 1sfc_B 14 SEIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAVKYQSK 81 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHc
Confidence 46788889999999999999999999999999999999999999999999999999999999998775
No 15
>1n7s_B Syntaxin 1A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 3rk2_B 3rk3_B 3rl0_B 1kil_B
Probab=99.04 E-value=2.1e-09 Score=71.21 Aligned_cols=62 Identities=11% Similarity=0.191 Sum_probs=59.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHH
Q 026774 139 IMREQDEGLEKLEETVVSTKHIALAVNEELDLHTRLIDDLDQHVDVTDSRLRRVQKNLAILN 200 (233)
Q Consensus 139 ~~~~qd~~l~~l~~~v~~l~~~~~~i~~ev~~Q~~~ld~i~~~vd~~~~~l~~~~~~l~~~~ 200 (233)
.+.+..+.+..|+.+|..|+++|.+++..|.+|+++||+|+++|+.|..++..|+..++++.
T Consensus 6 ~i~eR~~ei~~Ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~~L~kA~ 67 (68)
T 1n7s_B 6 EIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAV 67 (68)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 46778899999999999999999999999999999999999999999999999999999874
No 16
>1gl2_B Syntaxin 7; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Mus musculus} SCOP: h.1.15.1
Probab=99.03 E-value=1.2e-09 Score=71.72 Aligned_cols=62 Identities=15% Similarity=0.332 Sum_probs=56.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHH
Q 026774 139 IMREQDEGLEKLEETVVSTKHIALAVNEELDLHTRLIDDLDQHVDVTDSRLRRVQKNLAILN 200 (233)
Q Consensus 139 ~~~~qd~~l~~l~~~v~~l~~~~~~i~~ev~~Q~~~ld~i~~~vd~~~~~l~~~~~~l~~~~ 200 (233)
.+.+..+.+..|..++..|+++|.+++..|.+|+++||+|+++|+.|..++..|+..+.++.
T Consensus 3 ~i~eR~~~i~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~eL~kA~ 64 (65)
T 1gl2_B 3 HMHERESSIRQLEADIMDINEIFKDLGMMIHEQGDVIDSIEANVESAEVHVQQANQQLSRAA 64 (65)
T ss_dssp --CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 35667789999999999999999999999999999999999999999999999999998864
No 17
>2c5k_T Syntaxin TLG1, T-snare affecting A late golgi compartment protein 1; protein transport/complex, snare, VFT complex, protein transport, phosphorylation; 2.05A {Saccharomyces cerevisiae} PDB: 2c5j_A 2c5i_T
Probab=99.00 E-value=1.8e-09 Score=75.97 Aligned_cols=92 Identities=10% Similarity=0.263 Sum_probs=75.9
Q ss_pred CCCCCCcHHHHHHHHHHHHHHHHHhhHhhhCCCCCCchhHHHHHHHHHHHHHHHHhHHHHHHHHhcCCCCCCCCHHHHHH
Q 026774 1 MASASDSWIKEYNEAIKLADDINGMISERSSMPASGPESQRHASAIRRKITILGTRLDSLQSLLSKLPGKQPISEKEMNR 80 (233)
Q Consensus 1 m~s~~D~~~~~~~ev~~~l~~i~~~i~~r~~~~~~~~e~~~~~~~Ir~~l~~l~~~l~~L~~~l~~~~~~~~~~~~E~~~ 80 (233)
|+-+.|||+.+.+++...+..++..+.++.. + ++ .....+++..+..+++.|.+|++.|...... ++.|+..
T Consensus 1 ~~~s~DPF~~V~~D~~~ql~~l~~~~~~~~~-~-~~---~~~~~El~~~l~el~e~l~DL~~SI~i~e~~---~~~EI~~ 72 (95)
T 2c5k_T 1 MNNSEDPFQQVVKDTKEQLNRINNYITRHNT-A-GD---DDQEEEIQDILKDVEETIVDLDRSIIVMKRD---ENEDVSG 72 (95)
T ss_dssp ----CCHHHHHHHHHHHHHHHHHHHHHHTCC-C------CTTHHHHHHHHHHHHHHHHHHHHHHHHHHTS---TTCCCHH
T ss_pred CCCCCCcHHHHHHHHHHHHHHHHHHHHHccC-C-CC---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC---CHHHHHH
Confidence 3335799999999999999999999988644 2 22 2567999999999999999999998764432 8899999
Q ss_pred HHHHHHHHHHHHHHHHHHhc
Q 026774 81 RKDMLANLRSKVNQMASTLN 100 (233)
Q Consensus 81 R~~~~~~l~~~l~~l~~~~~ 100 (233)
|+.++..++.++..|+..++
T Consensus 73 Rk~~v~~l~~~i~~lk~~~~ 92 (95)
T 2c5k_T 73 REAQVKNIKQQLDALKLRFD 92 (95)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHh
Confidence 99999999999999998875
No 18
>3c98_B Syntaxin-1A; protein complex, alternative splicing, cytoplasm, membrane, phosphoprotein, protein transport, transport, coiled coil; 2.60A {Rattus norvegicus}
Probab=98.20 E-value=2.2e-06 Score=71.15 Aligned_cols=202 Identities=15% Similarity=0.214 Sum_probs=117.0
Q ss_pred CcHHHHHHHHHHHHHHHHHhhHhhhCC-------CCCCc----hhHHHHHHHHHHHHHHHHhHHHHHHHHhcCCCCCCCC
Q 026774 6 DSWIKEYNEAIKLADDINGMISERSSM-------PASGP----ESQRHASAIRRKITILGTRLDSLQSLLSKLPGKQPIS 74 (233)
Q Consensus 6 D~~~~~~~ev~~~l~~i~~~i~~r~~~-------~~~~~----e~~~~~~~Ir~~l~~l~~~l~~L~~~l~~~~~~~~~~ 74 (233)
+-|+...++|...+..+...+.+-..+ +.... ....+..+|......+...+..++...+....-. ..
T Consensus 43 ~ef~~~ve~i~~~i~~i~~~v~el~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~i~~~~~~i~~~~~~~~~i~-~~ 121 (279)
T 3c98_B 43 DEFFEQVEEIRGFIDKIAENVEEVKRKHSAILASPNPDEKTKEELEELMSDIKKTANKVRSKLKSIEQSIEQEEGLN-RS 121 (279)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT-CC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc-cc
Confidence 348888889998898888887544321 11111 2244566677777777777777766654432221 24
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcccc--c----cC--C--CCcCCCCCCChhh--------hh---cccCCCchhHH
Q 026774 75 EKEMNRRKDMLANLRSKVNQMASTLNMSN--F----AN--R--DSLLGPEIKSADV--------MN---RATGLDNQGLV 133 (233)
Q Consensus 75 ~~E~~~R~~~~~~l~~~l~~l~~~~~~~~--~----~~--r--~~l~~~~~~~~~e--------~~---~~~~~~~~~~~ 133 (233)
..+++.+.++...|...+..+...|.... + .. | ....+++...... +. ....... ...
T Consensus 122 ~~~i~~~~~qtn~La~n~a~~~a~~~~~~~~~~~vva~evr~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 200 (279)
T 3c98_B 122 SADLRIRKTQHSTLSRKFVEVMSEYNATQSDYRERCKGRIQRQLEITGRTTTSEELEDMLESGNPAIFASGIIMDS-SIS 200 (279)
T ss_dssp SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHSCCTTSSTTTSCSCS-SST
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCccchHHHHHHHhhhhHHHHHHHHHHH-HHH
Confidence 57788888888888888766655553211 0 00 0 0001111110000 00 0000000 111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHhcCCCchh
Q 026774 134 GFQRQIMREQDEGLEKLEETVVSTKHIALAVNEELDLHTRLIDDLDQHVDVTDSRLRRVQKNLAILNKRTKGGCTC 209 (233)
Q Consensus 134 ~~q~~~~~~qd~~l~~l~~~v~~l~~~~~~i~~ev~~Q~~~ld~i~~~vd~~~~~l~~~~~~l~~~~~~~~~~~~~ 209 (233)
......+.+..+.+..|...|..+.+++.+|...+++|+.++++|+.+|+.+...+..++..+.++.++++..++|
T Consensus 201 ~~~~~~i~~~~~~i~~I~~~i~ei~~~~~~ia~~v~eQ~~~~~~I~~nv~~~~~~v~~~~~el~~A~~~q~~~Rkk 276 (279)
T 3c98_B 201 KQALSEIETRHSEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAVKYQSKARRK 276 (279)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHCSGGGCHHHHHHTCCCCCCCCC----------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence 2223456677789999999999999999999999999999999999999999999999999999999998874443
No 19
>1fio_A SSO1 protein; four helix bundle, alpha helix, membrane protein; 2.10A {Saccharomyces cerevisiae} SCOP: a.47.2.1
Probab=97.66 E-value=5.7e-05 Score=59.85 Aligned_cols=155 Identities=13% Similarity=0.165 Sum_probs=95.0
Q ss_pred CcHHHHHHHHHHHHHHHHHhhHhhhCC-----CCCCch--------hHHHHHHHHHHHHHHHHhHHHHHHHHhcCCCCCC
Q 026774 6 DSWIKEYNEAIKLADDINGMISERSSM-----PASGPE--------SQRHASAIRRKITILGTRLDSLQSLLSKLPGKQP 72 (233)
Q Consensus 6 D~~~~~~~ev~~~l~~i~~~i~~r~~~-----~~~~~e--------~~~~~~~Ir~~l~~l~~~l~~L~~~l~~~~~~~~ 72 (233)
+.|+...++|...+..|+..+.+-..+ ...+.. ...+..+|......+...|+.|+...
T Consensus 5 ~~f~~~~~~i~~~i~~i~~~v~~L~~l~~~~l~~~~~~~~~~~~~~i~~l~~~i~~~~~~~~~~lk~l~~~~-------- 76 (196)
T 1fio_A 5 VGFMNKISQINRDLDKYDHTINQVDSLHKRLLTEVNEEQASHLRHSLDNFVAQATDLQFKLKNEIKSAQRDG-------- 76 (196)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT--------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc--------
Confidence 459999999999999999998655432 111211 11244555555555555555554431
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHhcccc--ccC-------CC-CcCCCCCCChhhhhcccC-CCchhHHH-------
Q 026774 73 ISEKEMNRRKDMLANLRSKVNQMASTLNMSN--FAN-------RD-SLLGPEIKSADVMNRATG-LDNQGLVG------- 134 (233)
Q Consensus 73 ~~~~E~~~R~~~~~~l~~~l~~l~~~~~~~~--~~~-------r~-~l~~~~~~~~~e~~~~~~-~~~~~~~~------- 134 (233)
.+.+.|+..+..|..++.++...|+..+ +.. |. ...+|.. +.++.+...+ .++..+++
T Consensus 77 ---~~~r~~k~~~~~L~~~f~~~~~~fq~~Q~~~~~~~k~~~~rq~~i~~~~~-~~~e~~~~~~~~~~~~~f~~~~~~~~ 152 (196)
T 1fio_A 77 ---IHDTNKQAQAENSRQRFLKLIQDYRIVDSNYKEENKEQAKRQYMIIQPEA-TEDEVEAAISDVGGQQIFSQALLNAN 152 (196)
T ss_dssp ---TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTC-CHHHHHHHTSHHHHHHHHHHHTC---
T ss_pred ---hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCC-CHHHHHHHHHcCCchhHHHHHHHhcc
Confidence 1236789999999999999999987532 111 11 1233322 2222222111 01111211
Q ss_pred ------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026774 135 ------FQRQIMREQDEGLEKLEETVVSTKHIALAVNEELDLHT 172 (233)
Q Consensus 135 ------~q~~~~~~qd~~l~~l~~~v~~l~~~~~~i~~ev~~Q~ 172 (233)
..-..+.+.++.|..|+.+|..|++||.+|+..|.+|+
T Consensus 153 ~~~~~~~~l~~i~eR~~eI~~IE~sI~EL~qiF~Dla~LV~~QG 196 (196)
T 1fio_A 153 RRGEAKTALAEVQARHQELLKLEKSMAELTQLFNDMEELVIEQQ 196 (196)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCCCC
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 01135678889999999999999999999999888774
No 20
>3hd7_A Vesicle-associated membrane protein 2; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_A 3ipd_A
Probab=97.26 E-value=0.0031 Score=43.63 Aligned_cols=42 Identities=14% Similarity=0.188 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHH
Q 026774 146 GLEKLEETVVSTKHIALAVNEELDLHTRLIDDLDQHVDVTDS 187 (233)
Q Consensus 146 ~l~~l~~~v~~l~~~~~~i~~ev~~Q~~~ld~i~~~vd~~~~ 187 (233)
.|..+...+.+.+.+-.+=-+.+-+-++-|+.+.+..++-..
T Consensus 6 ~l~~vq~ev~evk~iM~~NI~kvL~RgekL~~L~~kt~~L~~ 47 (91)
T 3hd7_A 6 RLQQTQAQVDEVVDIMRVNVDKVLERDQKLSELDDRADALQA 47 (91)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHH
Confidence 344444444444544444444555666666666666554444
No 21
>1ez3_A Syntaxin-1A; three helix bundle, endocytosis/exocytosis complex; 1.90A {Rattus norvegicus} SCOP: a.47.2.1 PDB: 1br0_A 3lg7_A*
Probab=97.16 E-value=0.0034 Score=45.88 Aligned_cols=96 Identities=20% Similarity=0.292 Sum_probs=72.3
Q ss_pred CcHHHHHHHHHHHHHHHHHhhHhhhCC-------CCCCc----hhHHHHHHHHHHHHHHHHhHHHHHHHHhcCCCCCCCC
Q 026774 6 DSWIKEYNEAIKLADDINGMISERSSM-------PASGP----ESQRHASAIRRKITILGTRLDSLQSLLSKLPGKQPIS 74 (233)
Q Consensus 6 D~~~~~~~ev~~~l~~i~~~i~~r~~~-------~~~~~----e~~~~~~~Ir~~l~~l~~~l~~L~~~l~~~~~~~~~~ 74 (233)
+.|+...++|...+..|+..+.+-..+ +...+ +...+..+|......++..|..|+......++.. .+
T Consensus 8 ~~F~~~v~~I~~~i~~i~~~v~~l~~~~~~~L~~~~~~~~~~~~l~~l~~~i~~~a~~ik~~Lk~l~~~~~~~~~~~-~~ 86 (127)
T 1ez3_A 8 DEFFEQVEEIRGFIDKIAENVEEVKRKHSAILASPNPDEKTKEELEELMSDIKKTANKVRSKLKSIEQSIEQEEGLN-RS 86 (127)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-CC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccC-CC
Confidence 459999999999999999998544432 11111 2235778888888888999988887765544332 35
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccc
Q 026774 75 EKEMNRRKDMLANLRSKVNQMASTLNMS 102 (233)
Q Consensus 75 ~~E~~~R~~~~~~l~~~l~~l~~~~~~~ 102 (233)
+.+.+.|++++..|..++.+++..|+..
T Consensus 87 s~~~Rir~~q~~~L~~kf~e~m~~y~~~ 114 (127)
T 1ez3_A 87 SADLRIRKTQHSTLSRKFVEVMSEYNAT 114 (127)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6778999999999999999999999753
No 22
>1n7s_C SNAP-25A; neuronal snare protein complex, four helix bundle, transport protein; 1.45A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1sfc_C 1urq_C 3hd7_C* 3hd9_C 3ipd_C 3rk2_C 3rk3_C 3rl0_C 1kil_C 1jth_A
Probab=97.01 E-value=0.021 Score=38.28 Aligned_cols=65 Identities=22% Similarity=0.312 Sum_probs=51.8
Q ss_pred HHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHH
Q 026774 136 QRQIMREQDEGL---EKLEETVVSTKHIALAVNEELDLHTRLIDDLDQHVDVTDSRLRRVQKNLAILN 200 (233)
Q Consensus 136 q~~~~~~qd~~l---~~l~~~v~~l~~~~~~i~~ev~~Q~~~ld~i~~~vd~~~~~l~~~~~~l~~~~ 200 (233)
++......++.+ ......+....++|..+..++..|++.|++++..++.....+..+.+.|..+.
T Consensus 11 ~~~~~~~~~~s~~s~~~~l~~a~Ete~~G~~Tl~~L~~Q~Eql~r~~~~ld~i~~~l~~a~k~L~~m~ 78 (79)
T 1n7s_C 11 QRRADQLADESLESTRRMLQLVEESKDAGIRTLVMLDEQGEQLDRVEEGMNHINQDMKEAEKNLKDLG 78 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHHHhHHHHHHHHHhhhc
Confidence 333344444444 45555566778899999999999999999999999999999999999888764
No 23
>1s94_A S-syntaxin; three helix bundle, structural plasticity, endocytosis-exocy complex; 3.34A {Loligo pealei} SCOP: a.47.2.1
Probab=96.91 E-value=0.0043 Score=48.36 Aligned_cols=96 Identities=15% Similarity=0.227 Sum_probs=71.4
Q ss_pred cHHHHHHHHHHHHHHHHHhhHhhhCC-----CCCC------chhHHHHHHHHHHHHHHHHhHHHHHHHHhcCCCCCCCCH
Q 026774 7 SWIKEYNEAIKLADDINGMISERSSM-----PASG------PESQRHASAIRRKITILGTRLDSLQSLLSKLPGKQPISE 75 (233)
Q Consensus 7 ~~~~~~~ev~~~l~~i~~~i~~r~~~-----~~~~------~e~~~~~~~Ir~~l~~l~~~l~~L~~~l~~~~~~~~~~~ 75 (233)
.|+...++|...+..|+..+.+-..+ .... .+...+..+|......++..|..|+......+... .++
T Consensus 40 ~F~~~v~~I~~~i~~i~~~v~~l~~~~~~~L~~~~~~~~~k~~le~l~~~i~~~a~~ik~~Lk~l~~~~~~~~~~~-~~s 118 (180)
T 1s94_A 40 EFFEQVEEIRAMIDKISDNVDAVKKKHSDILSAPQTDDQMKEELEELMTDIKRTANKVRGKLKTIELNIEQEEHSN-KSS 118 (180)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC------C
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccC-CCc
Confidence 39999999999999999987544432 1111 12345788888899999999999998877665432 456
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccc
Q 026774 76 KEMNRRKDMLANLRSKVNQMASTLNMSN 103 (233)
Q Consensus 76 ~E~~~R~~~~~~l~~~l~~l~~~~~~~~ 103 (233)
.+.+.|++++..|..++.++...|+..+
T Consensus 119 ~~~Rir~~q~~~L~~kf~~~m~~yq~~q 146 (180)
T 1s94_A 119 ADLRIRKTQYSTISRKFVEVMSDYNTTQ 146 (180)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6789999999999999999999997643
No 24
>3hd7_B Syntaxin-1A; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_B 3ipd_B
Probab=96.86 E-value=0.024 Score=40.48 Aligned_cols=78 Identities=12% Similarity=0.164 Sum_probs=62.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHHH
Q 026774 138 QIMREQDEGLEKLEETVVSTKHIALAVNEELDLHTRLIDDLDQHVDVTDSRLRRVQKNLAILNKRTKGGCTCMCMLLAV 216 (233)
Q Consensus 138 ~~~~~qd~~l~~l~~~v~~l~~~~~~i~~ev~~Q~~~ld~i~~~vd~~~~~l~~~~~~l~~~~~~~~~~~~~~~i~~l~ 216 (233)
.-+.+....+.+|++....+..+-.+=|+.++.=..-++....+|+.+...+..|.+.=++..++ .-.|.+||+++++
T Consensus 21 ~eI~~Ie~~I~eL~~iF~dla~lV~eQge~Id~Ie~nv~~a~~~v~~g~~eL~kA~~yqk~~rkk-~~i~l~~~~i~~~ 98 (109)
T 3hd7_B 21 SEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAVKYQSKARRK-KIMIIICCVILGI 98 (109)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCc-ceehHHHHHHHHH
Confidence 55677788899999999999999999999999999999999999999999999998877776665 2334444444443
No 25
>1nhl_A Synaptosomal-associated protein 23; snare, coiled-coil, protein transport; 2.30A {Homo sapiens} SCOP: h.1.15.1
Probab=96.56 E-value=0.022 Score=35.23 Aligned_cols=47 Identities=13% Similarity=0.285 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHH
Q 026774 151 EETVVSTKHIALAVNEELDLHTRLIDDLDQHVDVTDSRLRRVQKNLA 197 (233)
Q Consensus 151 ~~~v~~l~~~~~~i~~ev~~Q~~~ld~i~~~vd~~~~~l~~~~~~l~ 197 (233)
...+....++|..+..++..|++.|++++..++..+..++.+.+.|.
T Consensus 6 ~~l~~ese~~g~~Tl~~L~~QgEql~r~~~~ld~i~~~l~~a~k~L~ 52 (54)
T 1nhl_A 6 LGLAIESQDAGIKTITMLDEQKEQLNRIEEGLDQINKDMRETEKTLT 52 (54)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhHhhHHHHHhHHHHHHhHHHHHHHHHh
Confidence 34556678899999999999999999999999999999999988775
No 26
>2nps_C Vesicle transport through interaction with T- snares homolog 1A; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Rattus norvegicus}
Probab=96.04 E-value=0.18 Score=33.79 Aligned_cols=67 Identities=19% Similarity=0.215 Sum_probs=59.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHhcC
Q 026774 138 QIMREQDEGLEKLEETVVSTKHIALAVNEELDLHTRLIDDLDQHVDVTDSRLRRVQKNLAILNKRTK 204 (233)
Q Consensus 138 ~~~~~qd~~l~~l~~~v~~l~~~~~~i~~ev~~Q~~~ld~i~~~vd~~~~~l~~~~~~l~~~~~~~~ 204 (233)
..++.-.+.|..-...+.+..++|..|-.++..|.+.|.+....++.++..+..+.+-|+.+.++.-
T Consensus 12 ~~L~rt~~~L~~s~r~~~ETE~iG~~il~~L~~QRE~l~~~~~~l~~~d~~l~~s~k~l~~M~rr~~ 78 (81)
T 2nps_C 12 ERLERSSRRLEAGYQIAVETEQIGQEMLENLSHDRERIQRARERLRETDANLGKSSRILTGMLRRII 78 (81)
T ss_dssp HHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHhHHHHHHHHHHHHHHHHH
Confidence 3345556678888889999999999999999999999999999999999999999999999887643
No 27
>3b5n_C Protein transport protein SEC9; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1
Probab=95.93 E-value=0.17 Score=33.00 Aligned_cols=53 Identities=9% Similarity=0.189 Sum_probs=45.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHH
Q 026774 149 KLEETVVSTKHIALAVNEELDLHTRLIDDLDQHVDVTDSRLRRVQKNLAILNK 201 (233)
Q Consensus 149 ~l~~~v~~l~~~~~~i~~ev~~Q~~~ld~i~~~vd~~~~~l~~~~~~l~~~~~ 201 (233)
..-..+..-.+.|..--.++..|++.|++++.++|.....++.|.++++.+-.
T Consensus 16 r~L~~a~e~e~~g~~Tl~~L~~QgEqL~rtE~~ld~i~~~~k~aek~l~~Lk~ 68 (70)
T 3b5n_C 16 NTLKMAQDAERAGMNTLGMLGHQSEQLNNVEGNLDLMKVQNKVADEKVAELKK 68 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 34444555667888888999999999999999999999999999999988754
No 28
>1gl2_C VTI1B, vesicle transport V-snare protein VTI1-like 1; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Mus musculus} SCOP: h.1.15.1
Probab=95.91 E-value=0.047 Score=35.11 Aligned_cols=58 Identities=17% Similarity=0.257 Sum_probs=50.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHH
Q 026774 143 QDEGLEKLEETVVSTKHIALAVNEELDLHTRLIDDLDQHVDVTDSRLRRVQKNLAILN 200 (233)
Q Consensus 143 qd~~l~~l~~~v~~l~~~~~~i~~ev~~Q~~~ld~i~~~vd~~~~~l~~~~~~l~~~~ 200 (233)
-.+.|..-...+.+..++|..+-.++..|.+.|.+....++.++..+..+.+-|+.+.
T Consensus 7 t~~~l~~s~ri~~ETE~iG~~~l~~L~~QREql~~t~~~l~~~d~~l~~s~k~L~~m~ 64 (65)
T 1gl2_C 7 ATQSIERSHRIATETDQIGTEIIEELGEQRDQLERTKSRLVNTNENLSKSRKILRSMS 64 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHhHHHhHHHhHHhHHHHHHHHHHhhc
Confidence 3456677777888899999999999999999999999999999999999998877653
No 29
>1l4a_C S-SNAP25 fusion protein; snare, snare complex, membrane fusion, neurotransmission, endocytosis/exocytosis complex; 2.95A {Loligo pealei} SCOP: h.1.15.1
Probab=95.63 E-value=0.055 Score=36.55 Aligned_cols=53 Identities=15% Similarity=0.260 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHH
Q 026774 147 LEKLEETVVSTKHIALAVNEELDLHTRLIDDLDQHVDVTDSRLRRVQKNLAIL 199 (233)
Q Consensus 147 l~~l~~~v~~l~~~~~~i~~ev~~Q~~~ld~i~~~vd~~~~~l~~~~~~l~~~ 199 (233)
....-..+......|..-..++..|++.|++++.++|.....++.|.+.+..+
T Consensus 29 Trr~l~l~~es~~~g~~Tl~~L~~QgEQL~rie~~ld~I~~dl~~Aek~L~~L 81 (83)
T 1l4a_C 29 TRRMLNMCEESKEAGIRTLVMLDEQGEQLDRIEEGLDQINQDMKDAEKNLEGM 81 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSGGGCTTC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 34555556666778999999999999999999999999999999887766543
No 30
>2kog_A Vesicle-associated membrane protein 2; synaptobrevin, VAMP2, DPC micelle, snare, coiled coil, membrane fusion, transmembrane; NMR {Rattus norvegicus}
Probab=94.65 E-value=0.0034 Score=45.67 Aligned_cols=17 Identities=18% Similarity=0.317 Sum_probs=10.1
Q ss_pred HHHHHHHHHHHhHhHHH
Q 026774 168 LDLHTRLIDDLDQHVDV 184 (233)
Q Consensus 168 v~~Q~~~ld~i~~~vd~ 184 (233)
|-+-++-||.|++..++
T Consensus 56 vLeRGEkLd~L~~KTe~ 72 (119)
T 2kog_A 56 VLERDQKLSELDDRADA 72 (119)
T ss_dssp HHCCCCSSCCCCSCCSC
T ss_pred HHHcccHHHHHHHHHHH
Confidence 44456666666665554
No 31
>3hd7_A Vesicle-associated membrane protein 2; membrane protein, coiled-coil, 4-helical bundle, cell juncti cytoplasmic vesicle, membrane, phosphoprotein; HET: GGG; 3.40A {Rattus norvegicus} PDB: 3hd9_A 3ipd_A
Probab=92.57 E-value=1.7 Score=29.64 Aligned_cols=18 Identities=11% Similarity=0.106 Sum_probs=8.2
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 026774 182 VDVTDSRLRRVQKNLAIL 199 (233)
Q Consensus 182 vd~~~~~l~~~~~~l~~~ 199 (233)
+......-.+..+++++-
T Consensus 45 L~~~s~~F~~~A~~l~rk 62 (91)
T 3hd7_A 45 LQAGASQFETSAAKLKRK 62 (91)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 333444444444555443
No 32
>1vcs_A Vesicle transport through interaction with T- snares homolog 1A; HABC domain, VTI1, UP and DOWN three helix bundle, LEFT-handed twist; NMR {Mus musculus} SCOP: a.47.2.1
Probab=90.82 E-value=3 Score=28.99 Aligned_cols=91 Identities=9% Similarity=0.179 Sum_probs=54.4
Q ss_pred CCCCcHHHHHHHHHHHHHHHHHhhHhhhCCCCCCchhHHHHHHHHHHHHHHHHhHHHHHHHHhcCCCCCCCCHHHHHHHH
Q 026774 3 SASDSWIKEYNEAIKLADDINGMISERSSMPASGPESQRHASAIRRKITILGTRLDSLQSLLSKLPGKQPISEKEMNRRK 82 (233)
Q Consensus 3 s~~D~~~~~~~ev~~~l~~i~~~i~~r~~~~~~~~e~~~~~~~Ir~~l~~l~~~l~~L~~~l~~~~~~~~~~~~E~~~R~ 82 (233)
|+++.|..--.+.+....+|...+..-..+ ++.+....-.+|...+..+...|.+|+--++..| +.....-.
T Consensus 2 ~sSelFe~YE~df~~l~~~i~~kl~~i~~~--~geerk~~i~~ie~~l~EA~ell~qMelE~r~~p------~~~R~~~~ 73 (102)
T 1vcs_A 2 SSGSSGEGYEQDFAVLTAEITSKIARVPRL--PPDEKKQMVANVEKQLEEARELLEQMDLEVREIP------PQSRGMYS 73 (102)
T ss_dssp CCCCCCCCSHHHHHHHHHHHHHHHHHGGGS--CTTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTSC------TTTHHHHH
T ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHhhcc--CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC------HHhHHHHH
Confidence 445555555555666667777777654433 2333434455666666666666666665555554 34444566
Q ss_pred HHHHHHHHHHHHHHHHhcc
Q 026774 83 DMLANLRSKVNQMASTLNM 101 (233)
Q Consensus 83 ~~~~~l~~~l~~l~~~~~~ 101 (233)
.-+...+.+++.++..++.
T Consensus 74 ~klr~Yk~dL~~lk~elk~ 92 (102)
T 1vcs_A 74 NRMRSYKQEMGKLETDFKR 92 (102)
T ss_dssp HHHHHHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 6677777777777776653
No 33
>2qyw_A Vesicle transport through interaction with T-SNAR homolog; HABC domain, protein transport, endocytosis; 2.00A {Mus musculus} PDB: 2v8s_V
Probab=90.64 E-value=3.1 Score=28.91 Aligned_cols=87 Identities=14% Similarity=0.115 Sum_probs=53.3
Q ss_pred CcHHHHHHHHHHHHHHHHHhhHhhhCCCCCCchhHHHHHHHHHHHHHHHHhHHHHHHHHhcCCCCCCCCHHHHHHHHHHH
Q 026774 6 DSWIKEYNEAIKLADDINGMISERSSMPASGPESQRHASAIRRKITILGTRLDSLQSLLSKLPGKQPISEKEMNRRKDML 85 (233)
Q Consensus 6 D~~~~~~~ev~~~l~~i~~~i~~r~~~~~~~~e~~~~~~~Ir~~l~~l~~~l~~L~~~l~~~~~~~~~~~~E~~~R~~~~ 85 (233)
+.|..--.+.+....+|...+.+-.... .+.+....-.+|.+.+..++..|.+++--++. +++........-+
T Consensus 15 elFe~YE~df~~l~~~i~~kl~~i~~~~-~~e~rk~~i~~ie~~ldEA~eLl~qMelE~r~------~p~s~R~~~~~kl 87 (102)
T 2qyw_A 15 EHFEKLHEIFRGLLEDLQGVPERLLGTA-GTEEKKKLVRDFDEKQQEANETLAEMEEELRY------APLTFRNPMMSKL 87 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTCC-CSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT------SCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh------CCHHHHHHHHHHH
Confidence 3566666777777788888887532221 12233334445555555555555555444433 3566666777888
Q ss_pred HHHHHHHHHHHHHh
Q 026774 86 ANLRSKVNQMASTL 99 (233)
Q Consensus 86 ~~l~~~l~~l~~~~ 99 (233)
...+++++.++..|
T Consensus 88 r~Yk~dL~~lk~el 101 (102)
T 2qyw_A 88 RNYRKDLAKLHREV 101 (102)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhc
Confidence 88888888887765
No 34
>2k48_A Nucleoprotein; viral protein; NMR {Andes virus}
Probab=85.37 E-value=4.1 Score=28.24 Aligned_cols=52 Identities=12% Similarity=0.339 Sum_probs=41.4
Q ss_pred HHHHHHHHHhHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 026774 47 RRKITILGTRLDSLQSLLSKLPGKQPISEKEMNRRKDMLANLRSKVNQMASTLN 100 (233)
Q Consensus 47 r~~l~~l~~~l~~L~~~l~~~~~~~~~~~~E~~~R~~~~~~l~~~l~~l~~~~~ 100 (233)
...|....+.|.+.++..+..|.. +...-+..|+..|..+..++.+++..+.
T Consensus 48 E~QL~iArQKLkdAe~~~E~DPDe--vNK~tl~~R~~~Vsalq~KiaeLKrqLA 99 (107)
T 2k48_A 48 EQQLVTARQKLKDAEKAVEVDPDD--VNKSTLQNRRAAVSTLETKLGELKRQLA 99 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCCCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCCCcH--HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667777777777778888864 4567789999999999999999988764
No 35
>2ic6_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 1.15A {Sin nombre virus}
Probab=82.13 E-value=7.9 Score=25.44 Aligned_cols=54 Identities=11% Similarity=0.300 Sum_probs=42.3
Q ss_pred HHHHHHHHHHHhHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 026774 45 AIRRKITILGTRLDSLQSLLSKLPGKQPISEKEMNRRKDMLANLRSKVNQMASTLN 100 (233)
Q Consensus 45 ~Ir~~l~~l~~~l~~L~~~l~~~~~~~~~~~~E~~~R~~~~~~l~~~l~~l~~~~~ 100 (233)
.+...|....+.|.+.+...+..|.. +...-+..|+..|..+..++.+++..+.
T Consensus 16 ~~E~QL~~A~QKLkdA~~~~e~DPDe--vNK~~~~~R~~~V~~lq~Ki~elkrqlA 69 (78)
T 2ic6_A 16 LHEQRLVTTRQKLKDAERAVELDPDD--VNKSTLQSRRAAVSALETKLGELKRELA 69 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHCCCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCcH--HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445677777777777778888864 4567789999999999999999988764
No 36
>2dnx_A Syntaxin-12; snare, HABC domain, UP and DOWN three helix bundle, LEFT-handed twist, membrane fusion, vesicle transport, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=81.97 E-value=12 Score=26.96 Aligned_cols=93 Identities=10% Similarity=0.113 Sum_probs=54.3
Q ss_pred HHHHHHHHHHHHHHHHHhhHhhhCC---CCCCchhHHHHHHHHHHHHHHHHhHHHHHHHHhcCCCCC-CCCHHHHHHHHH
Q 026774 8 WIKEYNEAIKLADDINGMISERSSM---PASGPESQRHASAIRRKITILGTRLDSLQSLLSKLPGKQ-PISEKEMNRRKD 83 (233)
Q Consensus 8 ~~~~~~ev~~~l~~i~~~i~~r~~~---~~~~~e~~~~~~~Ir~~l~~l~~~l~~L~~~l~~~~~~~-~~~~~E~~~R~~ 83 (233)
|......|...|..|...+...+.+ ..+..+...+...|.....++...+.+....|+.+..-. ..++.+-+.++-
T Consensus 12 f~~l~~~is~~I~~In~~vs~l~r~v~~LGT~kDt~~LR~kl~~~~~~t~~l~k~ts~~lk~L~~~~~~~~~~~~r~~k~ 91 (130)
T 2dnx_A 12 FSSIIQTCSGNIQRISQATAQIKNLMSQLGTKQDSSKLQENLQQLQHSTNQLAKETNELLKELGSLPLPLSTSEQRQQRL 91 (130)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCSSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchHHHHHH
Confidence 9999999999999999888655542 123333444555555555555555555555554332110 124444455555
Q ss_pred HHHHHHHHHHHHHHHhc
Q 026774 84 MLANLRSKVNQMASTLN 100 (233)
Q Consensus 84 ~~~~l~~~l~~l~~~~~ 100 (233)
....|..++...-..|.
T Consensus 92 q~~KL~~dF~~~L~~FQ 108 (130)
T 2dnx_A 92 QKERLMNDFSAALNNFQ 108 (130)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 66666666666555554
No 37
>4fi5_A Nucleoprotein; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.20A {Hantaan virus}
Probab=80.87 E-value=7.7 Score=27.23 Aligned_cols=61 Identities=11% Similarity=0.309 Sum_probs=46.9
Q ss_pred hHHHHHHHH---HHHHHHHHhHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 026774 39 SQRHASAIR---RKITILGTRLDSLQSLLSKLPGKQPISEKEMNRRKDMLANLRSKVNQMASTLNM 101 (233)
Q Consensus 39 ~~~~~~~Ir---~~l~~l~~~l~~L~~~l~~~~~~~~~~~~E~~~R~~~~~~l~~~l~~l~~~~~~ 101 (233)
..++..+|. ..|....+.|.+.+...+..|.. +...-+..|+..|..+..++.+++..+..
T Consensus 24 ieeLq~Ei~~~E~QL~~ArQKLkdA~~~~e~DPDe--vNK~tl~~R~~~Vs~lq~KiaeLKrqLAd 87 (113)
T 4fi5_A 24 MEELQREINAHEGQLVIARQKVRDAEKQYEKDPDE--LNKRTLTDREGVAVSIQAKIDELKRQLAD 87 (113)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555554 46777778888888888888865 45677899999999999999999988754
No 38
>2ic9_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 2.00A {Sin nombre virus}
Probab=77.68 E-value=12 Score=25.55 Aligned_cols=56 Identities=11% Similarity=0.280 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHhHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 026774 44 SAIRRKITILGTRLDSLQSLLSKLPGKQPISEKEMNRRKDMLANLRSKVNQMASTLNM 101 (233)
Q Consensus 44 ~~Ir~~l~~l~~~l~~L~~~l~~~~~~~~~~~~E~~~R~~~~~~l~~~l~~l~~~~~~ 101 (233)
..+...|....+.|.+.+...+..|.. +...-+..|+..|..+..++.+++..+..
T Consensus 15 ~~~E~QL~~A~QKLkdA~~~~e~DPDe--vNk~~~~~R~~~V~~lq~Ki~elkr~lAd 70 (96)
T 2ic9_A 15 TLHEQRLVTTRQKLKDAERAVELDPDD--VNKSTLQSRRAAVSALETKLGELKRELAD 70 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHCCCH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCcH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334456777777788888878888864 45677899999999999999999987754
No 39
>2lk9_A Bone marrow stromal antigen 2; membrane, micelle, antiviral protein-immune system complex; NMR {Homo sapiens}
Probab=76.41 E-value=2.6 Score=22.92 Aligned_cols=20 Identities=30% Similarity=0.438 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHHHHHh
Q 026774 212 MLLAVIGIVVLVVVIYMLIK 231 (233)
Q Consensus 212 i~~l~i~lv~l~v~i~~~~k 231 (233)
+++|++++.+...+|||..|
T Consensus 11 vl~LLviV~LgV~LI~f~~k 30 (35)
T 2lk9_A 11 ILVLLIIVILGVPLIIFTIK 30 (35)
T ss_dssp HHHHHHHHHHHHHHHHHC--
T ss_pred HHHHHHHHHhcchheEEeee
Confidence 33343334444446666654
No 40
>2lx0_A Membrane fusion protein P14; membrane fusion protein transmembrane domain, P14 fast prote ARCH, micelle-peptide complex, membrane protein; NMR {Synthetic}
Probab=73.65 E-value=4.8 Score=20.80 Aligned_cols=17 Identities=24% Similarity=0.624 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHhhC
Q 026774 217 IGIVVLVVVIYMLIKYL 233 (233)
Q Consensus 217 i~lv~l~v~i~~~~k~~ 233 (233)
++++.++.+.|++.|||
T Consensus 13 valltflafgfwlfkyl 29 (32)
T 2lx0_A 13 VALLTFLAFGFWLFKYL 29 (32)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 45555556777787774
No 41
>3p8c_F ABL interactor 2; actin polymerization, protein binding; 2.29A {Homo sapiens}
Probab=72.41 E-value=28 Score=26.09 Aligned_cols=52 Identities=10% Similarity=0.159 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHH
Q 026774 145 EGLEKLEETVVSTKHIALAVNEELDLHTRLIDDLDQHVDVTDSRLRRVQKNL 196 (233)
Q Consensus 145 ~~l~~l~~~v~~l~~~~~~i~~ev~~Q~~~ld~i~~~vd~~~~~l~~~~~~l 196 (233)
-....|.+.+-.+..+|.++-..++.|..-+..++..|......+.-=..++
T Consensus 54 Ya~qsLaSVAyqIn~lA~~ll~lLd~Q~~~l~~mes~v~~l~Q~v~ih~EKv 105 (159)
T 3p8c_F 54 YTTQSLASVAYLINTLANNVLQMLDIQASQLRRMESSINHISQTVDIHKEKV 105 (159)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3467899999999999999999999999999999999998888876544433
No 42
>2l8s_A Integrin alpha-1; transmembrane region, detergent micelle, CE adhesion; NMR {Homo sapiens}
Probab=70.47 E-value=6.8 Score=23.85 Aligned_cols=23 Identities=30% Similarity=0.501 Sum_probs=12.3
Q ss_pred hHHH-HHHHHHHHHHHHHHHHHHh
Q 026774 209 CMCM-LLAVIGIVVLVVVIYMLIK 231 (233)
Q Consensus 209 ~~~i-~~l~i~lv~l~v~i~~~~k 231 (233)
+|+| +-.+..++++++++|.+-|
T Consensus 9 ~WiIi~svl~GLLLL~Lii~~LwK 32 (54)
T 2l8s_A 9 LWVILLSAFAGLLLLMLLILALWK 32 (54)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444 3344455555556666655
No 43
>2knc_A Integrin alpha-IIB; transmembrane signaling, protein structure, cell A cleavage on PAIR of basic residues, disease mutation, disul bond, glycoprotein; NMR {Homo sapiens}
Probab=69.49 E-value=7.1 Score=23.79 Aligned_cols=24 Identities=13% Similarity=0.306 Sum_probs=12.7
Q ss_pred hhHHH-HHHHHHHHHHHHHHHHHHh
Q 026774 208 TCMCM-LLAVIGIVVLVVVIYMLIK 231 (233)
Q Consensus 208 ~~~~i-~~l~i~lv~l~v~i~~~~k 231 (233)
-+|+| +-.+..++++++++|.+-|
T Consensus 11 p~wiIi~svl~GLllL~li~~~LwK 35 (54)
T 2knc_A 11 PIWWVLVGVLGGLLLLTILVLAMWK 35 (54)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34544 3344455555556666655
No 44
>3efg_A Protein SLYX homolog; xanthomonas campestris PV. campestris, coiled-coil, structur genomics, PSI-2, protein structure initiative; 2.00A {Xanthomonas campestris PV}
Probab=63.33 E-value=28 Score=22.72 Aligned_cols=49 Identities=14% Similarity=0.049 Sum_probs=33.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHH
Q 026774 144 DEGLEKLEETVVSTKHIALAVNEELDLHTRLIDDLDQHVDVTDSRLRRV 192 (233)
Q Consensus 144 d~~l~~l~~~v~~l~~~~~~i~~ev~~Q~~~ld~i~~~vd~~~~~l~~~ 192 (233)
++.|.+|+..+.-+-..-..+++.|-.|...||.+...+.....++...
T Consensus 13 e~Ri~~LE~klAfqE~tIeeLn~~v~~Qq~~Id~L~~ql~~L~~rl~~~ 61 (78)
T 3efg_A 13 EARLVELETRLSFQEQALTELSEALADARLTGARNAELIRHLLEDLGKV 61 (78)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4456677777777777777777778888888888877776666666543
No 45
>2k1a_A Integrin alpha-IIB; single-PASS transmembrane segment, alternative splicing, calcium, cell adhesion, cleavage on PAIR of basic residues; NMR {Homo sapiens} PDB: 2k9j_A
Probab=62.82 E-value=13 Score=21.35 Aligned_cols=24 Identities=13% Similarity=0.306 Sum_probs=13.3
Q ss_pred hhHHH-HHHHHHHHHHHHHHHHHHh
Q 026774 208 TCMCM-LLAVIGIVVLVVVIYMLIK 231 (233)
Q Consensus 208 ~~~~i-~~l~i~lv~l~v~i~~~~k 231 (233)
-+|+| +-.+..++++++++|.+-|
T Consensus 9 p~wiIi~s~l~GLllL~li~~~LwK 33 (42)
T 2k1a_A 9 PIWWVLVGVLGGLLLLTILVLAMWK 33 (42)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34544 3344555566666666665
No 46
>2kv5_A FST, putative uncharacterized protein RNAI; toxin-antitoxin, bacterial, toxin; NMR {Enterococcus faecalis}
Probab=58.43 E-value=12 Score=20.25 Aligned_cols=22 Identities=23% Similarity=0.388 Sum_probs=15.3
Q ss_pred HHHHHHHHHHHHHHHHHHHhhC
Q 026774 212 MLLAVIGIVVLVVVIYMLIKYL 233 (233)
Q Consensus 212 i~~l~i~lv~l~v~i~~~~k~~ 233 (233)
++.++|+=+++.+++-++.+||
T Consensus 4 i~~~IIaPivVGvvl~L~d~WL 25 (33)
T 2kv5_A 4 LMSLVIAPIFVGLVLEMISRVL 25 (33)
T ss_dssp THHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3556677777777777777765
No 47
>3j1r_A Archaeal adhesion filament core; helical polymer, flagellar filament, cell adhesion, structur protein; 7.50A {Ignicoccus hospitalis}
Probab=56.08 E-value=13 Score=18.75 Aligned_cols=16 Identities=31% Similarity=0.521 Sum_probs=8.7
Q ss_pred HHHHHHHHHHHHHHHH
Q 026774 213 LLAVIGIVVLVVVIYM 228 (233)
Q Consensus 213 ~~l~i~lv~l~v~i~~ 228 (233)
++|+++.+.-+|++|.
T Consensus 8 ~lLIviav~aaVllyl 23 (26)
T 3j1r_A 8 LLLILIAVAAAVLLYT 23 (26)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 4444555555666664
No 48
>2rdd_B UPF0092 membrane protein YAJC; drug resistance, multidrug efflux, transporter, antiporter, novel transmembrane helix, ACRB, inner membrane; HET: AIC; 3.50A {Escherichia coli}
Probab=55.80 E-value=9.8 Score=21.06 Aligned_cols=6 Identities=17% Similarity=1.004 Sum_probs=2.4
Q ss_pred HHHHHH
Q 026774 224 VVIYML 229 (233)
Q Consensus 224 v~i~~~ 229 (233)
++.|++
T Consensus 14 ~ifYFl 19 (37)
T 2rdd_B 14 LIFYFM 19 (37)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 344443
No 49
>1b9u_A Protein (ATP synthase); membrane protein, hydrolase; HET: GMA; NMR {Synthetic} SCOP: j.35.1.1
Probab=54.87 E-value=16 Score=19.53 Aligned_cols=15 Identities=20% Similarity=0.627 Sum_probs=7.5
Q ss_pred HHHHHHHHHHHHhhC
Q 026774 219 IVVLVVVIYMLIKYL 233 (233)
Q Consensus 219 lv~l~v~i~~~~k~~ 233 (233)
++.+++++|++-||+
T Consensus 11 ~i~Flil~~~l~kf~ 25 (34)
T 1b9u_A 11 AIAFVLFVLFCMKYV 25 (34)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHH
Confidence 344444555555553
No 50
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=54.02 E-value=26 Score=31.35 Aligned_cols=16 Identities=13% Similarity=0.216 Sum_probs=8.6
Q ss_pred HHHHHHHHHHHhHhHH
Q 026774 168 LDLHTRLIDDLDQHVD 183 (233)
Q Consensus 168 v~~Q~~~ld~i~~~vd 183 (233)
|++|..-|.+||.++|
T Consensus 140 Ledq~~kIQRLEvDId 155 (562)
T 3ghg_A 140 VRAQLVDMKRLEVDID 155 (562)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5555555555555554
No 51
>3arc_T Photosystem II reaction center protein T; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_T* 2axt_T* 3bz1_T* 3bz2_T* 3kzi_T* 3prq_T* 3prr_T* 3a0b_T* 3a0h_T*
Probab=51.53 E-value=13 Score=19.99 Aligned_cols=15 Identities=13% Similarity=0.319 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHHH
Q 026774 213 LLAVIGIVVLVVVIY 227 (233)
Q Consensus 213 ~~l~i~lv~l~v~i~ 227 (233)
++|+..+.++++.|+
T Consensus 8 ~ll~~tlgiiFFAI~ 22 (32)
T 3arc_T 8 FIFACIIALFFFAIF 22 (32)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhh
Confidence 444445555555554
No 52
>3ghg_A Fibrinogen alpha chain; triple-stranded coiled coil, beta sheets, alpha helices, AMY amyloidosis, blood coagulation, disease mutation, glycoprot phosphoprotein; HET: NAG NDG BMA MAN GAL SIA; 2.90A {Homo sapiens} PDB: 3h32_A* 2a45_G*
Probab=50.44 E-value=1.4e+02 Score=26.76 Aligned_cols=50 Identities=12% Similarity=0.195 Sum_probs=37.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHhcCC
Q 026774 156 STKHIALAVNEELDLHTRLIDDLDQHVDVTDSRLRRVQKNLAILNKRTKG 205 (233)
Q Consensus 156 ~l~~~~~~i~~ev~~Q~~~ld~i~~~vd~~~~~l~~~~~~l~~~~~~~~~ 205 (233)
+|+..-..|..+|+.|-..|.-|...+++-...|++.-.-|.--+++=+.
T Consensus 114 ELRRrIqyLKekVdnQlsnIrvLQsnLedq~~kIQRLEvDIdiqirsCKg 163 (562)
T 3ghg_A 114 DLRSRIEVLKRKVIEKVQHIQLLQKNVRAQLVDMKRLEVDIDIKIRSCRG 163 (562)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 66666677778898898888888888888888887776666666665333
No 53
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=49.10 E-value=50 Score=21.22 Aligned_cols=23 Identities=30% Similarity=0.510 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHhHhHHHHHHHHH
Q 026774 168 LDLHTRLIDDLDQHVDVTDSRLR 190 (233)
Q Consensus 168 v~~Q~~~ld~i~~~vd~~~~~l~ 190 (233)
+..+...|+.++..++.-...+.
T Consensus 35 Lr~kd~~I~eLEk~L~ekd~eI~ 57 (72)
T 3nmd_A 35 LRQRDALIDELELELDQKDELIQ 57 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333
No 54
>1deq_A Fibrinogen (alpha chain); coiled-coil, blood clotting; 3.50A {Bos taurus} SCOP: i.9.1.1
Probab=46.75 E-value=1.3e+02 Score=25.86 Aligned_cols=19 Identities=16% Similarity=0.116 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHhHHHH
Q 026774 42 HASAIRRKITILGTRLDSL 60 (233)
Q Consensus 42 ~~~~Ir~~l~~l~~~l~~L 60 (233)
.+..++..+..|+..|.++
T Consensus 61 ~er~~~~rIe~L~~~L~~~ 79 (390)
T 1deq_A 61 VDQDFTSRINKLRDSLFNY 79 (390)
T ss_pred hhhhHHHHHHHHHHHHHHH
Confidence 3444555555555555544
No 55
>2l34_A TYRO protein tyrosine kinase-binding protein; immunoreceptor, transmembrane assembly, DAP12, protein bindi; NMR {Homo sapiens} PDB: 2l35_B
Probab=46.15 E-value=19 Score=19.42 Aligned_cols=16 Identities=19% Similarity=0.513 Sum_probs=9.5
Q ss_pred HHHHHHHHHHHHHHHh
Q 026774 216 VIGIVVLVVVIYMLIK 231 (233)
Q Consensus 216 ~i~lv~l~v~i~~~~k 231 (233)
+++.+++++++|+..|
T Consensus 17 i~~t~~i~~~vy~~~r 32 (33)
T 2l34_A 17 LVLTVLIALAVYFLGR 32 (33)
T ss_dssp HHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHhheec
Confidence 3445566667777655
No 56
>3onj_A T-snare VTI1; helix, HABC, protein transport; 1.92A {Saccharomyces cerevisiae} PDB: 3onl_C
Probab=46.03 E-value=66 Score=21.70 Aligned_cols=83 Identities=11% Similarity=0.091 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHHHhhHhhhCCCCCCchhHHHHHHHHHHHHHHHHhHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHHH
Q 026774 12 YNEAIKLADDINGMISERSSMPASGPESQRHASAIRRKITILGTRLDSLQSLLSKLPGKQPISEKEMNRRKDMLANLRSK 91 (233)
Q Consensus 12 ~~ev~~~l~~i~~~i~~r~~~~~~~~e~~~~~~~Ir~~l~~l~~~l~~L~~~l~~~~~~~~~~~~E~~~R~~~~~~l~~~ 91 (233)
-.+.+....+|+..+..-..+ +|.+....-.+|...+..+...|..|+--++... .++........-+...+..
T Consensus 7 E~df~~~~~~i~~~l~~~~~~--~ge~Rk~~i~~ie~~ldEA~ell~qMelE~~~~~----~p~~~R~~~~~klr~Yk~d 80 (97)
T 3onj_A 7 ESDFKTTLEQAKASLAEAPSQ--PLSQRNTTLKHVEQQQDELFDLLDQMDVEVNNSI----GDASERATYKAKLREWKKT 80 (97)
T ss_dssp HHHHHHHHHHHHHHHHHGGGS--CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----CCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcc--ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC----CCHHHHHHHHHHHHHHHHH
Confidence 344455556777776543322 2333334455556666666666666655554441 0445555666677777777
Q ss_pred HHH-HHHHhc
Q 026774 92 VNQ-MASTLN 100 (233)
Q Consensus 92 l~~-l~~~~~ 100 (233)
+.. ++..+.
T Consensus 81 l~~~lk~~lk 90 (97)
T 3onj_A 81 IQSDIKRPLQ 90 (97)
T ss_dssp HHHHTHHHHH
T ss_pred HHHHHHHHHH
Confidence 776 666654
No 57
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=43.96 E-value=1.1e+02 Score=23.57 Aligned_cols=32 Identities=9% Similarity=0.062 Sum_probs=24.7
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 026774 69 GKQPISEKEMNRRKDMLANLRSKVNQMASTLN 100 (233)
Q Consensus 69 ~~~~~~~~E~~~R~~~~~~l~~~l~~l~~~~~ 100 (233)
+.|.-...|+.-++.....+.+++.++...|+
T Consensus 3 ~~f~s~~ee~~ywk~~~~~~~q~~~~le~El~ 34 (189)
T 2v71_A 3 MDFSSLKEETAYWKELSMKYKQSFQEARDELV 34 (189)
T ss_dssp -CCSSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34545567888899999999999988888775
No 58
>3vmt_A Monofunctional glycosyltransferase; transmembrane, bacterial cell WALL SYNT membrane; HET: LHI; 2.30A {Staphylococcus aureus} PDB: 3vmr_A* 3vms_A 3vmq_A*
Probab=43.19 E-value=21 Score=29.16 Aligned_cols=9 Identities=22% Similarity=0.704 Sum_probs=3.8
Q ss_pred HHHHHHHHH
Q 026774 222 LVVVIYMLI 230 (233)
Q Consensus 222 l~v~i~~~~ 230 (233)
++.+.|+++
T Consensus 51 ~~~~~~~~~ 59 (263)
T 3vmt_A 51 FIGIMYFLS 59 (263)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhh
Confidence 333444444
No 59
>2w1k_A Putative sortase; pilus, pneumococcus, pathogenicity, transferase; HET: MES; 2.14A {Streptococcus pneumoniae}
Probab=42.61 E-value=5.2 Score=32.53 Aligned_cols=26 Identities=15% Similarity=0.323 Sum_probs=0.0
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHhh
Q 026774 207 CTCMCMLLAVIGIVVLVVVIYMLIKY 232 (233)
Q Consensus 207 ~~~~~i~~l~i~lv~l~v~i~~~~k~ 232 (233)
+.||...+++++++++++++|.+.|.
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (252)
T 2w1k_A 223 SQWLYRGLVVLAFLGILFVLWKLARL 248 (252)
T ss_dssp --------------------------
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666555666666666677776664
No 60
>1ic2_A Tropomyosin alpha chain, skeletal muscle; alpha-helical coiled coil, alanine, symmetry, axial stagger, BEND, contractIle protein; 2.00A {Gallus gallus} SCOP: h.1.5.1
Probab=41.78 E-value=70 Score=20.75 Aligned_cols=59 Identities=15% Similarity=0.267 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHhc
Q 026774 145 EGLEKLEETVVSTKHIALAVNEELDLHTRLIDDLDQHVDVTDSRLRRVQKNLAILNKRT 203 (233)
Q Consensus 145 ~~l~~l~~~v~~l~~~~~~i~~ev~~Q~~~ld~i~~~vd~~~~~l~~~~~~l~~~~~~~ 203 (233)
+.++.+...+.....-+.....||..-+.-+..++.++|.+..++..++.++...-+..
T Consensus 20 ~~~~~~e~~l~~~e~~~~~~E~ev~~L~kKiq~lE~eld~~ee~l~~a~~kLeeaek~~ 78 (81)
T 1ic2_A 20 DRAEQAEADKKAAEERSKQLEDELVALQKKLKGTEDELDKYSESLKDAQEKLELADKKA 78 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGC
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44556666666777778888999999999999999999999999999999998876653
No 61
>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1
Probab=39.07 E-value=51 Score=18.45 Aligned_cols=27 Identities=26% Similarity=0.348 Sum_probs=20.6
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHh
Q 026774 73 ISEKEMNRRKDMLANLRSKVNQMASTL 99 (233)
Q Consensus 73 ~~~~E~~~R~~~~~~l~~~l~~l~~~~ 99 (233)
++++|+..-..-+..+..++..+++.+
T Consensus 17 fspeelaaleselqalekklaalkskl 43 (48)
T 1g6u_A 17 FSPEELAALESELQALEKKLAALKSKL 43 (48)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 688888877777777777777776654
No 62
>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A
Probab=39.00 E-value=90 Score=21.22 Aligned_cols=57 Identities=9% Similarity=0.139 Sum_probs=45.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHH
Q 026774 145 EGLEKLEETVVSTKHIALAVNEELDLHTRLIDDLDQHVDVTDSRLRRVQKNLAILNK 201 (233)
Q Consensus 145 ~~l~~l~~~v~~l~~~~~~i~~ev~~Q~~~ld~i~~~vd~~~~~l~~~~~~l~~~~~ 201 (233)
+..+.+...+.....-+.....||..-+.-+..++..+|.+...+..++.++...-+
T Consensus 23 drae~~e~~~k~~e~~~~~~E~Ei~sL~kk~~~lE~eld~~ee~L~ea~~kLee~ek 79 (101)
T 3u1c_A 23 DRAEQAEADKKAAEERSKQLEDDIVQLEKQLRVTEDSRDQVLEELHKSEDSLLFAEE 79 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345667777777778888888888888888888888888888888888877775544
No 63
>3okq_A BUD site selection protein 6; coiled-coil, protein binding; 2.04A {Saccharomyces cerevisiae} PDB: 3onx_A
Probab=37.73 E-value=1.2e+02 Score=22.18 Aligned_cols=28 Identities=14% Similarity=0.268 Sum_probs=15.9
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHhcc
Q 026774 74 SEKEMNRRKDMLANLRSKVNQMASTLNM 101 (233)
Q Consensus 74 ~~~E~~~R~~~~~~l~~~l~~l~~~~~~ 101 (233)
++.-+..=..-+..+...+..+...++.
T Consensus 52 ~~~ql~~v~kdi~~a~~eL~~m~~~i~~ 79 (141)
T 3okq_A 52 AKKKLETVSKDLENAQADVLKLQEFIDT 79 (141)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555555555556666666666665543
No 64
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=35.28 E-value=5.2e+02 Score=28.93 Aligned_cols=56 Identities=16% Similarity=0.184 Sum_probs=37.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHh
Q 026774 140 MREQDEGLEKLEETVVSTKHIALAVNEELDLHTRLIDDLDQHVDVTDSRLRRVQKNLAILNKR 202 (233)
Q Consensus 140 ~~~qd~~l~~l~~~v~~l~~~~~~i~~ev~~Q~~~ld~i~~~vd~~~~~l~~~~~~l~~~~~~ 202 (233)
+.+-.+.|.++.+.+..|+.-....-.| -..+...++.+..+|.+|.+-+..+...
T Consensus 2030 L~~~~~~L~~le~~l~~L~~~~~~~~~e-------k~~L~~e~~~~~~kl~rA~~Li~gL~~E 2085 (3245)
T 3vkg_A 2030 QDEIVATITALEKSIATYKEEYATLIRE-------TEQIKTESSKVKNKVDRSIALLDNLNSE 2085 (3245)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHhhhhc
Confidence 4444556777777777776665544433 3567777888888888887777766554
No 65
>2ww9_B Protein transport protein SSS1; ribonucleoprotein, transmembrane, phospho signal sequence, membrane, ribosome, transport; 8.60A {Saccharomyces cerevisiae} PDB: 2wwa_B
Probab=34.83 E-value=24 Score=23.22 Aligned_cols=28 Identities=11% Similarity=0.096 Sum_probs=10.2
Q ss_pred HHHHHhHhHHHHHHHHHHHHHHHHHHHHhcCC
Q 026774 174 LIDDLDQHVDVTDSRLRRVQKNLAILNKRTKG 205 (233)
Q Consensus 174 ~ld~i~~~vd~~~~~l~~~~~~l~~~~~~~~~ 205 (233)
|.|.++.-++....-++.. .++++..+.
T Consensus 14 ~~d~~~~~~e~~~~f~kd~----~rvlk~~~K 41 (80)
T 2ww9_B 14 SNNQVEKLVEAPVEFVREG----TQFLAKCKK 41 (80)
T ss_dssp -------CCHHHHHHHHHH----HHHHHSCCC
T ss_pred HHHHHHHHHHHHHHHHHHH----HHHHHHhcC
Confidence 4455555555555555444 445554433
No 66
>2f95_B Sensory rhodopsin II transducer; membrane protein complex, signal transduction, photocycle ST membrane protein; HET: BOG RET; 2.20A {Natronomonas pharaonis} SCOP: f.17.4.1
Probab=34.08 E-value=21 Score=25.55 Aligned_cols=13 Identities=23% Similarity=-0.072 Sum_probs=3.1
Q ss_pred HHHHHHHHHHHHh
Q 026774 219 IVVLVVVIYMLIK 231 (233)
Q Consensus 219 lv~l~v~i~~~~k 231 (233)
+++++++.|++.+
T Consensus 69 ~~~~~~~~~~~~~ 81 (163)
T 2f95_B 69 GINLGLVAATLGG 81 (163)
T ss_dssp HHHHHHHC-----
T ss_pred HHHHHHHHHHHHH
Confidence 3333334444443
No 67
>3hb3_B Cytochrome C oxidase subunit 2; electron transfer, proton transfer, proton pumping, membrane protein, cell inner membrane, cell membrane, copper; HET: HEA LDA LMT; 2.25A {Paracoccus denitrificans} PDB: 1ar1_B* 3ehb_B* 1qle_B*
Probab=34.00 E-value=36 Score=28.27 Aligned_cols=18 Identities=11% Similarity=0.537 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHhh
Q 026774 215 AVIGIVVLVVVIYMLIKY 232 (233)
Q Consensus 215 l~i~lv~l~v~i~~~~k~ 232 (233)
++|+++++++++|++.||
T Consensus 72 ~~I~v~V~~l~~~~~~r~ 89 (298)
T 3hb3_B 72 TAVTIFVCLLLLICIVRF 89 (298)
T ss_dssp HHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344455555566666554
No 68
>2dnx_A Syntaxin-12; snare, HABC domain, UP and DOWN three helix bundle, LEFT-handed twist, membrane fusion, vesicle transport, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=33.44 E-value=1.3e+02 Score=21.36 Aligned_cols=45 Identities=11% Similarity=0.138 Sum_probs=34.4
Q ss_pred CCchhHHHHHHHHHHHHHHHHhHHHHHHHHhcCCCCCCCCHHHHHHH
Q 026774 35 SGPESQRHASAIRRKITILGTRLDSLQSLLSKLPGKQPISEKEMNRR 81 (233)
Q Consensus 35 ~~~e~~~~~~~Ir~~l~~l~~~l~~L~~~l~~~~~~~~~~~~E~~~R 81 (233)
..++...+...|-..|..+...+..|++.+..++.. -+..+++.+
T Consensus 8 d~~ef~~l~~~is~~I~~In~~vs~l~r~v~~LGT~--kDt~~LR~k 52 (130)
T 2dnx_A 8 QLRDFSSIIQTCSGNIQRISQATAQIKNLMSQLGTK--QDSSKLQEN 52 (130)
T ss_dssp CSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSS--SCCHHHHHH
T ss_pred CChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC--CchHHHHHH
Confidence 345778899999999999999999999999877542 244555543
No 69
>2nps_B Syntaxin 13, vesicle-associated membrane protein 4; vesicle fusion, snare complex, early endosomal snare complex, VTI1A, VAMP4, transport protein; 2.50A {Rattus norvegicus}
Probab=33.04 E-value=91 Score=19.53 Aligned_cols=59 Identities=8% Similarity=0.156 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHH
Q 026774 139 IMREQDEGLEKLEETVVSTKHIALAVNEELDLHTRLIDDLDQHVDVTDSRLRRVQKNLA 197 (233)
Q Consensus 139 ~~~~qd~~l~~l~~~v~~l~~~~~~i~~ev~~Q~~~ld~i~~~vd~~~~~l~~~~~~l~ 197 (233)
-+.+....+.+|++....|..+-..=|..|+.=..-++....+|+.+...|..|.+.-+
T Consensus 7 ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~eL~kA~~~qk 65 (71)
T 2nps_B 7 AIQQLEADILDVNQIFKDLAMMIHDQGDLIDSIEANVESSEVHVERASDQLQRAAYYQK 65 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35566677888888888888888888888998888999999999999999999876544
No 70
>1m1j_B Fibrinogen beta chain; coiled coils, disulfide rings, fibrinogen, blood clotting; HET: NDG NAG; 2.70A {Gallus gallus} SCOP: d.171.1.1 h.1.8.1 PDB: 1ei3_B*
Probab=32.79 E-value=2.6e+02 Score=24.66 Aligned_cols=58 Identities=10% Similarity=0.158 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHH
Q 026774 140 MREQDEGLEKLEETVVSTKHIALAVNEELDLHTRLIDDLDQHVDVTDSRLRRVQKNLA 197 (233)
Q Consensus 140 ~~~qd~~l~~l~~~v~~l~~~~~~i~~ev~~Q~~~ld~i~~~vd~~~~~l~~~~~~l~ 197 (233)
+++.+..|+.|+.+.....+.-..|...+..-...+-+.+..|......++.....++
T Consensus 102 LqeLe~~l~~lsn~Ts~~~~~i~~Iq~slk~~Q~Qi~en~n~~~~~~~~~e~~~~~i~ 159 (464)
T 1m1j_B 102 LRDLKDRVAKFSDTSTTMYQYVNMIDNKLVKTQKQRKDNDIILSEYNTEMELHYNYIK 159 (464)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHHH
Confidence 4555666666666666555555555555444333344444444444444444333333
No 71
>3fym_A Putative uncharacterized protein; HTH DNA binding, DNA binding protein; 1.00A {Staphylococcus aureus subsp}
Probab=31.65 E-value=9.9 Score=27.21 Aligned_cols=7 Identities=14% Similarity=0.411 Sum_probs=3.0
Q ss_pred CCHHHHH
Q 026774 73 ISEKEMN 79 (233)
Q Consensus 73 ~~~~E~~ 79 (233)
+|..|+.
T Consensus 17 ltq~elA 23 (130)
T 3fym_A 17 MTLTELE 23 (130)
T ss_dssp CCHHHHH
T ss_pred CCHHHHH
Confidence 4444443
No 72
>1jth_B Syntaxin 1A; coiled-coil, polar layer, endocytosis-exocytosis complex; 2.00A {Rattus norvegicus} SCOP: h.1.15.1 PDB: 1hvv_A* 1urq_B
Probab=31.47 E-value=1e+02 Score=19.62 Aligned_cols=61 Identities=10% Similarity=0.102 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHH
Q 026774 138 QIMREQDEGLEKLEETVVSTKHIALAVNEELDLHTRLIDDLDQHVDVTDSRLRRVQKNLAI 198 (233)
Q Consensus 138 ~~~~~qd~~l~~l~~~v~~l~~~~~~i~~ev~~Q~~~ld~i~~~vd~~~~~l~~~~~~l~~ 198 (233)
.-+.+....+.+|++....+..+-..=|..|+.=..-++....+|+.+...|..|.+.-++
T Consensus 10 ~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~~L~kA~~~q~~ 70 (77)
T 1jth_B 10 SEIIKLENSIRELHDMFMDMAMLVESQGEMIDRIEYNVEHAVDYVERAVSDTKKAVKYQSK 70 (77)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4466777888899999999999999999999998999999999999999999998775443
No 73
>1gl2_B Syntaxin 7; membrane protein, membrane fusion protein complex, coiled coil, transmembrane; 1.9A {Mus musculus} SCOP: h.1.15.1
Probab=30.57 E-value=97 Score=19.07 Aligned_cols=56 Identities=13% Similarity=0.232 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHH
Q 026774 138 QIMREQDEGLEKLEETVVSTKHIALAVNEELDLHTRLIDDLDQHVDVTDSRLRRVQ 193 (233)
Q Consensus 138 ~~~~~qd~~l~~l~~~v~~l~~~~~~i~~ev~~Q~~~ld~i~~~vd~~~~~l~~~~ 193 (233)
.-+.+....+.+|++....|..+-..=|..|+.=..-++....+|+.+...|.+|.
T Consensus 9 ~~i~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~eL~kA~ 64 (65)
T 1gl2_B 9 SSIRQLEADIMDINEIFKDLGMMIHEQGDVIDSIEANVESAEVHVQQANQQLSRAA 64 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 33566667788888888888888888888888888888899999999998888764
No 74
>3p8c_D Wiskott-aldrich syndrome protein family member 1; actin polymerization, protein binding; 2.29A {Homo sapiens}
Probab=30.50 E-value=2.2e+02 Score=23.23 Aligned_cols=32 Identities=13% Similarity=0.168 Sum_probs=17.6
Q ss_pred HHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHH
Q 026774 170 LHTRLIDDLDQHVDVTDSRLRRVQKNLAILNK 201 (233)
Q Consensus 170 ~Q~~~ld~i~~~vd~~~~~l~~~~~~l~~~~~ 201 (233)
.=.++..+|...+..+..++.....|+.++..
T Consensus 47 ~A~dIF~eL~~e~~~~~~R~~~L~~RI~~L~~ 78 (279)
T 3p8c_D 47 YAEDIFGELFNEAHSFSFRVNSLQERVDRLSV 78 (279)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444555555555666666666666555553
No 75
>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}
Probab=30.37 E-value=1.3e+02 Score=20.35 Aligned_cols=55 Identities=13% Similarity=0.149 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHH
Q 026774 146 GLEKLEETVVSTKHIALAVNEELDLHTRLIDDLDQHVDVTDSRLRRVQKNLAILN 200 (233)
Q Consensus 146 ~l~~l~~~v~~l~~~~~~i~~ev~~Q~~~ld~i~~~vd~~~~~l~~~~~~l~~~~ 200 (233)
..+.+...+.....-+.....+|..-..-+..++..+|.+..++..++..+...-
T Consensus 24 ~ae~~e~~~k~~e~~~~~~E~ei~sL~kKiq~lE~eld~~~e~l~~a~~kLe~~e 78 (101)
T 3u59_A 24 RAEQAEADKKQAEDRCKQLEEEQQGLQKKLKGTEDEVEKYSESVKEAQEKLEQAE 78 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4456666666667777777777777777777778888877777777776665443
No 76
>1rh5_B Preprotein translocase SECE subunit; protein translocation, SECY, membrane protein, protein channels, protein transport; 3.20A {Methanocaldococcus jannaschii} SCOP: f.23.28.1 PDB: 1rhz_B 2yxq_B 2yxr_B 3dkn_B
Probab=30.01 E-value=65 Score=20.81 Aligned_cols=14 Identities=7% Similarity=-0.218 Sum_probs=6.6
Q ss_pred HHHHHHHHHHhcCC
Q 026774 192 VQKNLAILNKRTKG 205 (233)
Q Consensus 192 ~~~~l~~~~~~~~~ 205 (233)
--+.-.++++..+.
T Consensus 15 f~kd~~rvlk~~~K 28 (74)
T 1rh5_B 15 FIEECRRVWLVLKK 28 (74)
T ss_dssp HHHHHHHHHHSEEC
T ss_pred HHHHHHHHHHHhcC
Confidence 33444555555443
No 77
>1sfc_A VAMP 2, protein (synaptobrevin 2); membrane fusion protein complex, transport protein; 2.40A {Rattus norvegicus} SCOP: h.1.15.1
Probab=27.95 E-value=1.4e+02 Score=20.07 Aligned_cols=19 Identities=16% Similarity=0.352 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHhHhHHH
Q 026774 166 EELDLHTRLIDDLDQHVDV 184 (233)
Q Consensus 166 ~ev~~Q~~~ld~i~~~vd~ 184 (233)
+.|-+-++-|+.|.+..+.
T Consensus 51 ~kvLeRGEkLd~L~dkse~ 69 (96)
T 1sfc_A 51 DKVLERDQKLSELDDRADA 69 (96)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhHHHHHHHHHHH
Confidence 3444556666666655544
No 78
>2dw3_A Intrinsic membrane protein PUFX; quinone exchange, photosynthesis, light- harvesting, GXXXG motif, dimerization; NMR {Rhodobacter sphaeroides} PDB: 2ita_A
Probab=27.82 E-value=75 Score=20.59 Aligned_cols=18 Identities=17% Similarity=0.357 Sum_probs=10.6
Q ss_pred HHHHHHHHHHHHHHHhhC
Q 026774 216 VIGIVVLVVVIYMLIKYL 233 (233)
Q Consensus 216 ~i~lv~l~v~i~~~~k~~ 233 (233)
+++++++++++|++..+|
T Consensus 37 f~~~~~~lv~l~~iG~~L 54 (77)
T 2dw3_A 37 FFGTLLLIGFFRVVGRML 54 (77)
T ss_dssp HHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHHHhC
Confidence 344555666677766554
No 79
>3din_D Preprotein translocase subunit SECE; protein translocation, membrane protein, ATPase, ATP-binding membrane, nucleotide-binding, protein transport; HET: ADP; 4.50A {Thermotoga maritima MSB8}
Probab=27.49 E-value=1.1e+02 Score=18.91 Aligned_cols=20 Identities=10% Similarity=0.076 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHHHHhcCC
Q 026774 186 DSRLRRVQKNLAILNKRTKG 205 (233)
Q Consensus 186 ~~~l~~~~~~l~~~~~~~~~ 205 (233)
-..++.+..+++|+.=-++.
T Consensus 5 ~~f~~~v~~ElkKV~WPtr~ 24 (65)
T 3din_D 5 RKFFREVIAEAKKISWPSRK 24 (65)
T ss_dssp -----CHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHhcccCcCHH
Confidence 34455667777777655554
No 80
>2k9j_B Integrin beta-3; transmembrane complex, cell adhesion, cleavage on basic residues, disease mutation, glycoprotein, pyrrolidone carboxylic acid; NMR {Homo sapiens} PDB: 2rmz_A 2rn0_A 2l91_A
Probab=27.18 E-value=73 Score=18.14 Aligned_cols=10 Identities=10% Similarity=0.255 Sum_probs=3.7
Q ss_pred HHHHHHHHHh
Q 026774 222 LVVVIYMLIK 231 (233)
Q Consensus 222 l~v~i~~~~k 231 (233)
+.++++.+-|
T Consensus 23 iGl~lLliwk 32 (43)
T 2k9j_B 23 IGLAALLIWK 32 (43)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 3333333333
No 81
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=27.07 E-value=3e+02 Score=23.68 Aligned_cols=63 Identities=14% Similarity=0.076 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHH
Q 026774 138 QIMREQDEGLEKLEETVVSTKHIALAVNEELDLHTRLIDDLDQHVDVTDSRLRRVQKNLAILN 200 (233)
Q Consensus 138 ~~~~~qd~~l~~l~~~v~~l~~~~~~i~~ev~~Q~~~ld~i~~~vd~~~~~l~~~~~~l~~~~ 200 (233)
.+..+.....+....-.....+-...+..|-..+...+++++..+..+.+.++.+..+-..+.
T Consensus 421 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 483 (487)
T 3oja_A 421 EMYVEQQSVQNNAIRDWDMYQHKETQLAEENARLKKLNGEADLALASANATLQELVVREQNLA 483 (487)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhcchhhhhhhhhHHHHHHHHhhhhhhhhhhhhhhhHhcccHHHHHHHHHHHHH
Confidence 344444445555555566666666666677777888888888888888888888877655444
No 82
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=26.83 E-value=1.3e+02 Score=19.29 Aligned_cols=21 Identities=10% Similarity=0.468 Sum_probs=12.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 026774 76 KEMNRRKDMLANLRSKVNQMA 96 (233)
Q Consensus 76 ~E~~~R~~~~~~l~~~l~~l~ 96 (233)
.++..+...+..|+.+++.++
T Consensus 47 k~L~ekd~eI~~LqseLDKfr 67 (72)
T 3nmd_A 47 LELDQKDELIQMLQNELDKYR 67 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHhh
Confidence 455555566666666665543
No 83
>1jdm_A Sarcolipin; helix, membrane protein; NMR {Synthetic} SCOP: j.35.1.1
Probab=26.75 E-value=51 Score=17.11 Aligned_cols=8 Identities=13% Similarity=1.003 Sum_probs=3.9
Q ss_pred HHHHHHHh
Q 026774 224 VVIYMLIK 231 (233)
Q Consensus 224 v~i~~~~k 231 (233)
+++|++++
T Consensus 20 lLi~llVr 27 (31)
T 1jdm_A 20 ILMWLLVR 27 (31)
T ss_dssp HHHHHHTT
T ss_pred HHHHHHHH
Confidence 34555543
No 84
>2akf_A Coronin-1A; coiled coil, protein binding; 1.20A {Synthetic}
Probab=25.68 E-value=78 Score=16.41 Aligned_cols=25 Identities=12% Similarity=0.456 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHh
Q 026774 75 EKEMNRRKDMLANLRSKVNQMASTL 99 (233)
Q Consensus 75 ~~E~~~R~~~~~~l~~~l~~l~~~~ 99 (233)
++|++.-+..+..|..+++.+....
T Consensus 5 ee~~r~l~~ivq~lq~r~drle~tv 29 (32)
T 2akf_A 5 EEDVRNLNAIVQKLQERLDRLEETV 29 (32)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3556666667777777777666544
No 85
>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=25.62 E-value=99 Score=17.57 Aligned_cols=29 Identities=14% Similarity=0.424 Sum_probs=20.9
Q ss_pred HHHHHhHhHHHHHHHHHHHHHHHHHHHHh
Q 026774 174 LIDDLDQHVDVTDSRLRRVQKNLAILNKR 202 (233)
Q Consensus 174 ~ld~i~~~vd~~~~~l~~~~~~l~~~~~~ 202 (233)
-+++++..++.+..++..-.++++.+-+.
T Consensus 10 kI~kVdrEI~Kte~kI~~lqkKlkeLee~ 38 (42)
T 2l5g_B 10 NMDRVDREITMVEQQISKLKKKQQQLEEE 38 (42)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 46777777778887777777777766553
No 86
>1urq_A M-tomosyn isoform; transport protein, tomosyn-snare complex, exocytosis, four helical bundle, coiled coil; 2.0A {Rattus norvegicus} SCOP: h.1.15.1
Probab=24.44 E-value=1.3e+02 Score=18.56 Aligned_cols=17 Identities=24% Similarity=0.374 Sum_probs=6.9
Q ss_pred HHHHHHHHHHHHHhHhH
Q 026774 166 EELDLHTRLIDDLDQHV 182 (233)
Q Consensus 166 ~ev~~Q~~~ld~i~~~v 182 (233)
+-|-+-++-|+.|++..
T Consensus 25 ~kvlERGekL~~L~dkT 41 (63)
T 1urq_A 25 LALDERGQKLSDLEERT 41 (63)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 33334444444444333
No 87
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=23.27 E-value=3.9e+02 Score=23.58 Aligned_cols=62 Identities=5% Similarity=-0.019 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHhcCC
Q 026774 144 DEGLEKLEETVVSTKHIALAVNEELDLHTRLIDDLDQHVDVTDSRLRRVQKNLAILNKRTKG 205 (233)
Q Consensus 144 d~~l~~l~~~v~~l~~~~~~i~~ev~~Q~~~ld~i~~~vd~~~~~l~~~~~~l~~~~~~~~~ 205 (233)
...+....+.+...++....+..|++.-...++.....+......+...+.+++.+..+...
T Consensus 522 ~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~l~~e~~~~~~~~~~l~~~~~~ 583 (597)
T 3oja_B 522 LRETQARRTEADAKQKETEDLEQENIALEKQLDNKRAKQAELRQETSLKRQKVKQLEAKKNR 583 (597)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC-
T ss_pred HHHHHHHHHhhhhhhcchhhHHhhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 34566677777777777777777777777788888888888888888888888888776443
No 88
>1vf5_F Protein PET M; photosynthesis, membrane protein complex, electron transfer complex; HET: HEM TDS PL9 OPC CLA BCR; 3.00A {Mastigocladus laminosus} SCOP: f.23.25.1 PDB: 2d2c_F* 2e74_F* 2e75_F* 2e76_F* 2zt9_F*
Probab=22.93 E-value=1e+02 Score=16.80 Aligned_cols=8 Identities=25% Similarity=0.347 Sum_probs=5.0
Q ss_pred HHHHHHhh
Q 026774 225 VIYMLIKY 232 (233)
Q Consensus 225 ~i~~~~k~ 232 (233)
+.|+++|.
T Consensus 22 ~Gf~LLki 29 (35)
T 1vf5_F 22 LGVLLLKI 29 (35)
T ss_dssp HHHHHHHT
T ss_pred HHHHhhee
Confidence 66666663
No 89
>3zrx_A AF1503 protein, osmolarity sensor protein ENVZ; signaling protein, osmoregulation, OMPR, OMPC; 1.25A {Archaeoglobus fulgidus} PDB: 3zrv_A 3zrw_A 3zrw_B 2lfs_A 2lfr_A 1joy_A 2l7i_A 2y20_A 2l7h_A 2y21_A 2y0t_A 2y0q_A
Probab=21.38 E-value=1.7e+02 Score=18.64 Aligned_cols=43 Identities=2% Similarity=-0.013 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHH
Q 026774 158 KHIALAVNEELDLHTRLIDDLDQHVDVTDSRLRRVQKNLAILN 200 (233)
Q Consensus 158 ~~~~~~i~~ev~~Q~~~ld~i~~~vd~~~~~l~~~~~~l~~~~ 200 (233)
..++.++..-+..=...++.+..........+..+..++..+.
T Consensus 65 ~~~shel~~~l~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 107 (115)
T 3zrx_A 65 AGVSHDLRTPLTRIRLATEMMSEQDGYLAESINKDIEECNAII 107 (115)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHH
Confidence 3334444333333333444444444444444444444444443
No 90
>3b5n_B Protein SSO1; snare complex, syntaxin, synaptobrevin, SNAP-25, SSO1P, SNC1P, SEC9P, SSO1, SNC1, coiled coil; 1.60A {Saccharomyces cerevisiae} SCOP: h.1.15.1
Probab=20.87 E-value=1.6e+02 Score=18.24 Aligned_cols=57 Identities=12% Similarity=0.241 Sum_probs=49.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHH
Q 026774 138 QIMREQDEGLEKLEETVVSTKHIALAVNEELDLHTRLIDDLDQHVDVTDSRLRRVQK 194 (233)
Q Consensus 138 ~~~~~qd~~l~~l~~~v~~l~~~~~~i~~ev~~Q~~~ld~i~~~vd~~~~~l~~~~~ 194 (233)
.-+.+....+.+|++.-..|..+-..=|..|+.=..-++....+|+.+...|.+|.+
T Consensus 10 ~ei~~ie~~i~eL~~iF~dla~lV~eQge~id~Ie~nv~~a~~~v~~g~~~L~kA~~ 66 (69)
T 3b5n_B 10 QELLKLEKSMAELTQLFNDMEELVIEQQENVDVIDKNVEDAQLDVEQGVGHTDKAVK 66 (69)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 446667788888999999999999888999998888999999999999999988865
No 91
>1pi7_A VPU protein, U ORF protein; alpha helix, viral protein; NMR {Human immunodeficiency virus 1} SCOP: j.35.1.1 PDB: 1pi8_A 1pje_A 2gof_A 2goh_A 2jpx_A
Probab=20.79 E-value=1.1e+02 Score=16.75 Aligned_cols=7 Identities=14% Similarity=0.724 Sum_probs=2.7
Q ss_pred HHHHHHH
Q 026774 222 LVVVIYM 228 (233)
Q Consensus 222 l~v~i~~ 228 (233)
+++++|.
T Consensus 17 iaIVVWt 23 (36)
T 1pi7_A 17 IAIVVWS 23 (36)
T ss_pred HHHHHHH
Confidence 3334443
No 92
>3t98_B Nucleoporin NUP58/NUP45; NUP62 complex, nuclear import, coiled-coil, HE hairpin, FG-repeat, NPC, nuclear tranport, TRA channel, karyopherin; 2.50A {Rattus norvegicus} PDB: 2osz_A
Probab=20.72 E-value=2e+02 Score=19.28 Aligned_cols=59 Identities=7% Similarity=0.197 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHhcCCCCCCCCHHHHHH----HHHHHHHHHHHHHHHHHH
Q 026774 40 QRHASAIRRKITILGTRLDSLQSLLSKLPGKQPISEKEMNR----RKDMLANLRSKVNQMAST 98 (233)
Q Consensus 40 ~~~~~~Ir~~l~~l~~~l~~L~~~l~~~~~~~~~~~~E~~~----R~~~~~~l~~~l~~l~~~ 98 (233)
.++..+-+..+...+..|+++++.|........+||.++.. --+....|-.++..+-..
T Consensus 11 ~~lv~~fe~rL~~Yr~~IeelE~~L~s~s~~~~~Tpq~L~~~l~~~h~~FiaLAa~l~~lH~~ 73 (93)
T 3t98_B 11 RVLVQQFEVQLQQYRQQIEELENHLATQANNSHITPQDLSMAMQKIYQTFVALAAQLQSIHEN 73 (93)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677778888888888999988886533223477777642 222344444444444433
No 93
>1q90_M Cytochrome B6F complex subunit PETM; membrane protein complex, photosynthesis, electron transfer, oxydoreductase, chlorophyll; HET: HEM CL1 BCR TDS SQD LFA LMG; 3.10A {Chlamydomonas reinhardtii} SCOP: f.23.25.1
Probab=20.53 E-value=1.2e+02 Score=16.88 Aligned_cols=7 Identities=14% Similarity=0.705 Sum_probs=4.3
Q ss_pred HHHHHHh
Q 026774 225 VIYMLIK 231 (233)
Q Consensus 225 ~i~~~~k 231 (233)
+.|+++|
T Consensus 23 ~Gf~LLk 29 (39)
T 1q90_M 23 IGFVLLR 29 (39)
T ss_dssp HHHHHHH
T ss_pred HHHHHhh
Confidence 5666665
No 94
>3tso_C RAB11 family-interacting protein 2; RAS GTPase fold (RAB25), vesicle trafficking, endosome, PROT transport; HET: GNP; 1.80A {Homo sapiens} PDB: 2k6s_A
Probab=20.36 E-value=1.8e+02 Score=18.70 Aligned_cols=34 Identities=15% Similarity=0.342 Sum_probs=16.3
Q ss_pred cccCCCchhHHH---HHHHHHHHHHHHHHHHHHHHHH
Q 026774 123 RATGLDNQGLVG---FQRQIMREQDEGLEKLEETVVS 156 (233)
Q Consensus 123 ~~~~~~~~~~~~---~q~~~~~~qd~~l~~l~~~v~~ 156 (233)
.+...+..++++ .|+..+..+|..+.+|++=|..
T Consensus 10 ~y~~ltreELi~l~lk~~~~l~~k~~~v~eLEdYID~ 46 (75)
T 3tso_C 10 GYRSLTYEEVLQELVKHKELLRRKDTHIRELEDYIDN 46 (75)
T ss_dssp --CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445566666654 2334455555555555444443
No 95
>3mp7_B Preprotein translocase subunit SECE; protein transport, membrane protein complex, preprotein TRAN membrane insertion,; 2.90A {Pyrococcus furiosus}
Probab=20.01 E-value=1.6e+02 Score=18.06 Aligned_cols=11 Identities=18% Similarity=-0.239 Sum_probs=4.8
Q ss_pred HHHHHHHhcCC
Q 026774 195 NLAILNKRTKG 205 (233)
Q Consensus 195 ~l~~~~~~~~~ 205 (233)
.-.++++..+.
T Consensus 14 d~~rvlk~~~K 24 (61)
T 3mp7_B 14 ESRRAFLVTKK 24 (61)
T ss_dssp HHTHHHHHSCC
T ss_pred HHHHHHHHhcC
Confidence 33444554433
No 96
>2yev_B Cytochrome C oxidase subunit 2; electron transport; HET: FME 5PL HAS 4AG 7E8 HEC 7E9; 2.36A {Thermus thermophilus}
Probab=25.27 E-value=22 Score=29.93 Aligned_cols=20 Identities=25% Similarity=0.300 Sum_probs=12.2
Q ss_pred HHHHHHHHHHHHHHHHHHhh
Q 026774 213 LLAVIGIVVLVVVIYMLIKY 232 (233)
Q Consensus 213 ~~l~i~lv~l~v~i~~~~k~ 232 (233)
+.++|++++.++++|++.||
T Consensus 45 ~~~~i~~~V~~~~~~~~~~~ 64 (337)
T 2yev_B 45 FSFLIFLVVAGSLAYVTWKF 64 (337)
Confidence 44445556666677777665
Done!