Your job contains 1 sequence.
>026776
MTTTNGVASLRLISDEIDGFDLSPSDTEEVHVLAVDDSFVDRKVIERLLTISSCKVTAVD
SGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKKIKDSSALREIPVVIM
SSENILARIDRCLEDGAEDFIVKPVKLSDVKRIKDYLTRDVNLGNEGRGINKRKARESCD
LSSSPPSVITSSSSPSSPSSPFRSPSILSSSAPCSPPSTLDSPTSRLKMTISD
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 026776
(233 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2025911 - symbol:ARR3 "response regulator 3" s... 577 5.3e-56 1
TAIR|locus:2194584 - symbol:ARR4 "response regulator 4" s... 576 6.8e-56 1
TAIR|locus:2170723 - symbol:ARR6 "response regulator 6" s... 508 1.1e-48 1
TAIR|locus:2097870 - symbol:RR5 "response regulator 5" sp... 496 2.0e-47 1
TAIR|locus:2027237 - symbol:ARR15 "response regulator 15"... 495 2.6e-47 1
TAIR|locus:2011286 - symbol:ARR7 "response regulator 7" s... 490 8.8e-47 1
TAIR|locus:2102509 - symbol:RR17 "response regulator 17" ... 424 8.7e-40 1
TAIR|locus:2080590 - symbol:ARR9 "response regulator 9" s... 416 6.1e-39 1
TAIR|locus:2040282 - symbol:RR3 "response regulator 3" sp... 412 1.6e-38 1
UNIPROTKB|Q4GZK2 - symbol:rr9 "Type A response regulator ... 406 7.0e-38 1
UNIPROTKB|Q4GZK7 - symbol:rr4 "Type A response regulator ... 406 7.0e-38 1
UNIPROTKB|Q4GZK8 - symbol:rr3 "Type A response regulator ... 362 3.2e-33 1
UNIPROTKB|Q4GZK5 - symbol:rr6 "Type A response regulator ... 352 3.7e-32 1
UNIPROTKB|Q4GZL0 - symbol:rr1 "Type A response regulator ... 327 1.6e-29 1
UNIPROTKB|Q4GZK4 - symbol:rr7 "Type A response regulator ... 325 2.7e-29 1
UNIPROTKB|Q4GZK3 - symbol:rr8 "Type A response regulator ... 293 6.6e-26 1
UNIPROTKB|Q4GZK9 - symbol:rr2 "Type A response regulator ... 248 3.9e-21 1
TAIR|locus:2044376 - symbol:PRR9 "pseudo-response regulat... 182 2.5e-13 1
DICTYBASE|DDB_G0284331 - symbol:regA "response regulator ... 174 4.5e-12 1
TAIR|locus:2151206 - symbol:PRR7 "pseudo-response regulat... 165 3.6e-11 1
UNIPROTKB|Q8EC92 - symbol:cheV "Chemotaxis signal transdu... 157 4.7e-11 1
TIGR_CMR|SO_3252 - symbol:SO_3252 "chemotaxis protein Che... 157 4.7e-11 1
TIGR_CMR|GSU_1285 - symbol:GSU_1285 "sensory box sensor h... 164 5.1e-11 1
TAIR|locus:2130095 - symbol:RR2 "response regulator 2" sp... 148 7.2e-11 2
TIGR_CMR|SPO_1953 - symbol:SPO_1953 "phosphate regulon tr... 150 9.4e-11 1
TIGR_CMR|SO_0549 - symbol:SO_0549 "chemotaxis protein Che... 151 1.3e-10 1
TAIR|locus:2040194 - symbol:RR12 "response regulator 12" ... 158 1.5e-10 1
TIGR_CMR|CJE_1664 - symbol:CJE_1664 "DNA-binding response... 148 1.5e-10 1
TAIR|locus:2054895 - symbol:AT2G07440 species:3702 "Arabi... 148 1.5e-10 1
TAIR|locus:2008585 - symbol:ARR11 "response regulator 11"... 153 4.2e-10 1
DICTYBASE|DDB_G0282927 - symbol:dhkL "histidine kinase L"... 158 6.0e-10 1
TIGR_CMR|CPS_1520 - symbol:CPS_1520 "chemotaxis protein C... 142 6.6e-10 1
TIGR_CMR|GSU_2535 - symbol:GSU_2535 "response regulator" ... 142 6.6e-10 1
TIGR_CMR|GSU_1038 - symbol:GSU_1038 "sensory box histidin... 151 6.8e-10 1
UNIPROTKB|Q48GG3 - symbol:cheY2 "Chemotaxis protein CheY"... 140 1.1e-09 1
TAIR|locus:2163198 - symbol:TOC1 "TIMING OF CAB EXPRESSIO... 150 1.2e-09 1
TIGR_CMR|CJE_1261 - symbol:CJE_1261 "chemotaxis protein C... 139 1.4e-09 1
TAIR|locus:2116587 - symbol:RR10 "response regulator 10" ... 146 2.6e-09 1
UNIPROTKB|P71403 - symbol:cheY "Chemotaxis protein CheY h... 135 3.6e-09 1
UNIPROTKB|Q4KG39 - symbol:cheY "Chemotaxis protein CheY" ... 135 3.6e-09 1
TIGR_CMR|CPS_3950 - symbol:CPS_3950 "response regulator/G... 144 4.5e-09 1
TIGR_CMR|GSU_2219 - symbol:GSU_2219 "response regulator" ... 132 7.6e-09 1
TIGR_CMR|SO_3209 - symbol:SO_3209 "chemotaxis protein Che... 132 7.6e-09 1
TIGR_CMR|GSU_1316 - symbol:GSU_1316 "response regulator" ... 142 7.8e-09 1
TIGR_CMR|SPO_3037 - symbol:SPO_3037 "DNA-binding response... 141 7.8e-09 1
TIGR_CMR|APH_0551 - symbol:APH_0551 "response regulator/G... 143 8.1e-09 1
UNIPROTKB|Q9KQD5 - symbol:VC_2065 "Chemotaxis protein Che... 131 9.7e-09 1
TIGR_CMR|VC_2065 - symbol:VC_2065 "chemotaxis protein Che... 131 9.7e-09 1
TIGR_CMR|GSU_2287 - symbol:GSU_2287 "response regulator" ... 130 1.2e-08 1
TIGR_CMR|GSU_2314 - symbol:GSU_2314 "sensory box histidin... 143 2.6e-08 1
TAIR|locus:2093668 - symbol:RR1 "response regulator 1" sp... 142 3.0e-08 1
TIGR_CMR|GSU_0403 - symbol:GSU_0403 "chemotaxis protein C... 123 6.8e-08 1
TIGR_CMR|CHY_2047 - symbol:CHY_2047 "DNA-binding response... 135 6.8e-08 1
TIGR_CMR|SO_3457 - symbol:SO_3457 "sensor histidine kinas... 141 7.5e-08 1
UNIPROTKB|Q9A5I5 - symbol:pleD "Response regulator PleD" ... 139 7.7e-08 1
TIGR_CMR|GSU_1102 - symbol:GSU_1102 "DNA-binding response... 134 8.4e-08 1
UNIPROTKB|Q74AX6 - symbol:cheY40H-1 "Response receiver Ch... 122 8.7e-08 1
TIGR_CMR|GSU_2223 - symbol:GSU_2223 "chemotaxis protein C... 122 8.7e-08 1
UNIPROTKB|Q9KRI8 - symbol:VC_1653 "Sensory box sensor his... 141 9.7e-08 1
TIGR_CMR|VC_1653 - symbol:VC_1653 "sensory box sensor his... 141 9.7e-08 1
TIGR_CMR|GSU_2212 - symbol:GSU_2212 "chemotaxis protein C... 121 1.1e-07 1
TIGR_CMR|GSU_2574 - symbol:GSU_2574 "response regulator" ... 137 1.2e-07 1
TIGR_CMR|GSU_1286 - symbol:GSU_1286 "chemotaxis protein C... 120 1.4e-07 1
TIGR_CMR|CHY_2567 - symbol:CHY_2567 "DNA-binding response... 133 1.5e-07 1
UNIPROTKB|Q52879 - symbol:cheY1 "CheY1" species:382 "Sino... 119 1.8e-07 1
UNIPROTKB|P0AFJ5 - symbol:phoB "PhoB transcriptional dual... 132 1.9e-07 1
UNIPROTKB|Q3ADB1 - symbol:cheY1 "Chemotaxis protein CheY"... 118 2.5e-07 1
UNIPROTKB|Q7D1A8 - symbol:cheY "Chemotaxis receiver prote... 118 2.5e-07 1
TIGR_CMR|CHY_1026 - symbol:CHY_1026 "chemotaxis protein C... 118 2.5e-07 1
NCBI_NP|NP_353545.1 - symbol:cheY "chemotaxisreceiverprot... 118 2.5e-07 1
UNIPROTKB|G3LTY8 - symbol:phoB "Two-component regulator p... 131 2.7e-07 1
TIGR_CMR|GSU_0598 - symbol:GSU_0598 "sigma-54 dependent D... 136 2.7e-07 1
UNIPROTKB|Q7Y0W3 - symbol:Q7Y0W3 "Two-component response ... 134 3.1e-07 1
UNIPROTKB|Q7Y0W5 - symbol:EHD1 "Two-component response re... 134 3.1e-07 1
UNIPROTKB|Q0C4H5 - symbol:cheY "Chemotaxis protein CheY" ... 117 3.3e-07 1
TIGR_CMR|BA_4920 - symbol:BA_4920 "DNA-binding response r... 130 3.7e-07 1
TIGR_CMR|NSE_0512 - symbol:NSE_0512 "response regulator/G... 135 3.9e-07 1
TAIR|locus:2061971 - symbol:CKI1 "CYTOKININ-INDEPENDENT 1... 138 3.9e-07 1
TIGR_CMR|BA_0996 - symbol:BA_0996 "sensor histidine kinas... 137 4.8e-07 1
TIGR_CMR|CHY_1125 - symbol:CHY_1125 "response regulator" ... 127 5.7e-07 1
UNIPROTKB|P0AE67 - symbol:cheY species:83333 "Escherichia... 115 5.8e-07 1
UNIPROTKB|Q74DM7 - symbol:cheY34H-1 "Response receiver Ch... 115 5.8e-07 1
UNIPROTKB|Q9WYT9 - symbol:TM_0468 "Response regulator" sp... 115 5.8e-07 1
TIGR_CMR|GSU_1289 - symbol:GSU_1289 "chemotaxis protein C... 115 5.8e-07 1
UNIPROTKB|P14376 - symbol:rcsC "RcsC sensory histidine ki... 136 7.2e-07 1
UNIPROTKB|Q9KKK8 - symbol:VC_A1096 "Chemotaxis protein Ch... 114 7.5e-07 1
TIGR_CMR|VC_A1096 - symbol:VC_A1096 "chemotaxis protein C... 114 7.5e-07 1
UNIPROTKB|Q9KS16 - symbol:VC_1445 "Sensor histidine kinas... 134 7.6e-07 1
TIGR_CMR|VC_1445 - symbol:VC_1445 "sensor histidine kinas... 134 7.6e-07 1
UNIPROTKB|Q9KRC3 - symbol:VC_1719 "DNA-binding response r... 128 8.0e-07 1
TIGR_CMR|CHY_0092 - symbol:CHY_0092 "DNA-binding response... 128 8.0e-07 1
TIGR_CMR|VC_1719 - symbol:VC_1719 "DNA-binding response r... 128 8.0e-07 1
TIGR_CMR|GSU_2046 - symbol:GSU_2046 "response regulator" ... 132 8.7e-07 1
TIGR_CMR|BA_0571 - symbol:BA_0571 "DNA-binding response r... 127 8.9e-07 1
UNIPROTKB|Q8EF67 - symbol:cheY "Chemotaxis signal transdu... 113 9.9e-07 1
TIGR_CMR|SO_2120 - symbol:SO_2120 "chemotaxis protein Che... 113 9.9e-07 1
UNIPROTKB|P0AEV1 - symbol:rssB "regulator of RpoS" specie... 129 1.6e-06 1
CGD|CAL0003344 - symbol:SLN1 species:5476 "Candida albica... 135 1.7e-06 1
UNIPROTKB|Q5A872 - symbol:SLN1 "Potential response regula... 135 1.7e-06 1
UNIPROTKB|Q3ADA5 - symbol:cheY2 "Chemotaxis protein CheY"... 111 1.7e-06 1
WARNING: Descriptions of 175 database sequences were not reported due to the
limiting value of parameter V = 100.
>TAIR|locus:2025911 [details] [associations]
symbol:ARR3 "response regulator 3" species:3702
"Arabidopsis thaliana" [GO:0000156 "phosphorelay response regulator
activity" evidence=IEA;ISS;IDA] [GO:0000160 "phosphorelay signal
transduction system" evidence=IEA;IDA;TAS] [GO:0006355 "regulation
of transcription, DNA-dependent" evidence=IEA;TAS] [GO:0009736
"cytokinin mediated signaling pathway" evidence=TAS] [GO:0010114
"response to red light" evidence=IMP] [GO:0010161 "red light
signaling pathway" evidence=IMP] [GO:0007623 "circadian rhythm"
evidence=IMP] [GO:0042752 "regulation of circadian rhythm"
evidence=IGI] [GO:0005634 "nucleus" evidence=IDA] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0009735 "response to cytokinin
stimulus" evidence=IEP] InterPro:IPR001789 Pfam:PF00072
PROSITE:PS50110 SMART:SM00448 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0005737 GO:GO:0006355
GO:GO:0007623 GO:GO:0006351 GO:GO:0042752 EMBL:AC007258
GO:GO:0009736 GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
HOGENOM:HOG000034820 KO:K14492 EMBL:AB008486 IPI:IPI00532280
PIR:T50853 RefSeq:NP_176202.1 UniGene:At.237
ProteinModelPortal:Q9ZWS9 SMR:Q9ZWS9 IntAct:Q9ZWS9 STRING:Q9ZWS9
EnsemblPlants:AT1G59940.1 GeneID:842288 KEGG:ath:AT1G59940
GeneFarm:4120 TAIR:At1g59940 eggNOG:COG3706 InParanoid:Q9ZWS9
OMA:RSEMIGI PhylomeDB:Q9ZWS9 ProtClustDB:CLSN2912722
Genevestigator:Q9ZWS9 GermOnline:AT1G59940 GO:GO:0010161
Uniprot:Q9ZWS9
Length = 231
Score = 577 (208.2 bits), Expect = 5.3e-56, P = 5.3e-56
Identities = 117/177 (66%), Positives = 143/177 (80%)
Query: 1 MTTTNGVASLR---LISDEIDGFDLSPSDTEEVHVLAVDDSFVDRKVIERLLTISSCKVT 57
M GV+ LR +I I + P D+++VHVLAVDDS VDR VIERLL I+SCKVT
Sbjct: 1 MAKDGGVSCLRRSEMIGIGIGELESPPLDSDQVHVLAVDDSLVDRIVIERLLRITSCKVT 60
Query: 58 AVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKKIKDSSALREIPV 117
AVDSG RAL+FLGLD++++ FD LKVDLIITDYCMPGMTGYELLKKIK+S++ +E+PV
Sbjct: 61 AVDSGWRALEFLGLDDDKAAVEFDRLKVDLIITDYCMPGMTGYELLKKIKESTSFKEVPV 120
Query: 118 VIMSSENILARIDRCLEDGAEDFIVKPVKLSDVKRIKDYLTRDVNLGNEGRGINKRK 174
VIMSSEN++ RIDRCLE+GAEDF++KPVKL+DVKR++ YLTRDV + EG NKRK
Sbjct: 121 VIMSSENVMTRIDRCLEEGAEDFLLKPVKLADVKRLRSYLTRDVKVAAEG---NKRK 174
>TAIR|locus:2194584 [details] [associations]
symbol:ARR4 "response regulator 4" species:3702
"Arabidopsis thaliana" [GO:0000156 "phosphorelay response regulator
activity" evidence=IEA;ISS;TAS] [GO:0000160 "phosphorelay signal
transduction system" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM;IDA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA;TAS] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0010017
"red or far-red light signaling pathway" evidence=IMP] [GO:0009736
"cytokinin mediated signaling pathway" evidence=RCA;IMP;TAS]
[GO:0010114 "response to red light" evidence=IMP] [GO:0009793
"embryo development ending in seed dormancy" evidence=IMP]
[GO:0007623 "circadian rhythm" evidence=RCA;IMP] [GO:0042752
"regulation of circadian rhythm" evidence=IGI] [GO:0009735
"response to cytokinin stimulus" evidence=IEP] [GO:0004674 "protein
serine/threonine kinase activity" evidence=IDA] [GO:0046777
"protein autophosphorylation" evidence=IDA] [GO:0006612 "protein
targeting to membrane" evidence=RCA] [GO:0009963 "positive
regulation of flavonoid biosynthetic process" evidence=RCA]
[GO:0010363 "regulation of plant-type hypersensitive response"
evidence=RCA] InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110
SMART:SM00448 EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005634
GO:GO:0005737 GO:GO:0006355 GO:GO:0007623 GO:GO:0004674
GO:GO:0046777 GO:GO:0006351 GO:GO:0042752 GO:GO:0010114
GO:GO:0009793 GO:GO:0009736 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 eggNOG:COG0784 EMBL:AC007067 GO:GO:0010017
HOGENOM:HOG000034820 KO:K14492 ProtClustDB:CLSN2912722
EMBL:AB008487 EMBL:AB010915 EMBL:AF057282 IPI:IPI00523637
PIR:T48851 RefSeq:NP_172517.1 UniGene:At.22981 UniGene:At.67259
ProteinModelPortal:O82798 SMR:O82798 IntAct:O82798 STRING:O82798
EnsemblPlants:AT1G10470.1 GeneID:837587 KEGG:ath:AT1G10470
GeneFarm:4121 TAIR:At1g10470 InParanoid:O82798 OMA:KRIRDYM
PhylomeDB:O82798 Genevestigator:O82798 GermOnline:AT1G10470
Uniprot:O82798
Length = 259
Score = 576 (207.8 bits), Expect = 6.8e-56, P = 6.8e-56
Identities = 122/181 (67%), Positives = 144/181 (79%)
Query: 1 MTTTNGVASLR---LIS-DEIDGFDLSPSDTEEVHVLAVDDSFVDRKVIERLLTISSCKV 56
M GV+ LR ++S I G + +P D +EVHVLAVDDS VDR VIERLL I+SCKV
Sbjct: 1 MARDGGVSCLRRSEMMSVGGIGGIESAPLDLDEVHVLAVDDSLVDRIVIERLLRITSCKV 60
Query: 57 TAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKKIKDSSALREIP 116
TAVDSG RAL+FLGLD E++ FD LKVDLIITDYCMPGMTGYELLKKIK+SS RE+P
Sbjct: 61 TAVDSGWRALEFLGLDNEKASAEFDRLKVDLIITDYCMPGMTGYELLKKIKESSNFREVP 120
Query: 117 VVIMSSENILARIDRCLEDGAEDFIVKPVKLSDVKRIKDYLTRDVNLGNEGRGINKRKAR 176
VVIMSSEN+L RIDRCLE+GA+DF++KPVKL+DVKR++ +LT+DV L N G NKRK
Sbjct: 121 VVIMSSENVLTRIDRCLEEGAQDFLLKPVKLADVKRLRSHLTKDVKLSN-G---NKRKLP 176
Query: 177 E 177
E
Sbjct: 177 E 177
>TAIR|locus:2170723 [details] [associations]
symbol:ARR6 "response regulator 6" species:3702
"Arabidopsis thaliana" [GO:0000156 "phosphorelay response regulator
activity" evidence=IEA;ISS;TAS] [GO:0000160 "phosphorelay signal
transduction system" evidence=IEA;TAS] [GO:0005634 "nucleus"
evidence=ISM;IDA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA;TAS] [GO:0009735 "response to cytokinin
stimulus" evidence=IEP] [GO:0009736 "cytokinin mediated signaling
pathway" evidence=RCA;IMP;TAS] [GO:0005515 "protein binding"
evidence=IPI] [GO:0007623 "circadian rhythm" evidence=RCA]
InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110 SMART:SM00448
GO:GO:0005739 GO:GO:0005634 EMBL:CP002688 GenomeReviews:BA000015_GR
GO:GO:0009536 GO:GO:0006355 GO:GO:0006351 GO:GO:0009736
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG0784
HOGENOM:HOG000034820 KO:K14492 ProtClustDB:CLSN2684027
EMBL:AB008489 EMBL:AB008491 EMBL:AB009053 EMBL:BT004799
IPI:IPI00547780 PIR:T50857 PIR:T50860 RefSeq:NP_201097.1
UniGene:At.24207 ProteinModelPortal:Q9ZWS6 SMR:Q9ZWS6 IntAct:Q9ZWS6
STRING:Q9ZWS6 EnsemblPlants:AT5G62920.1 GeneID:836412
KEGG:ath:AT5G62920 GeneFarm:4123 TAIR:At5g62920 InParanoid:Q9ZWS6
OMA:DDSQEIK PhylomeDB:Q9ZWS6 Genevestigator:Q9ZWS6
GermOnline:AT5G62920 Uniprot:Q9ZWS6
Length = 186
Score = 508 (183.9 bits), Expect = 1.1e-48, P = 1.1e-48
Identities = 103/147 (70%), Positives = 122/147 (82%)
Query: 28 EEVHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDL 87
+ +HVLAVDDS VDRK IERLL +SSCKVT VDS RALQ+LGLD E+ GF+ LKV+L
Sbjct: 23 DPLHVLAVDDSHVDRKFIERLLRVSSCKVTVVDSATRALQYLGLDVEEKSVGFEDLKVNL 82
Query: 88 IITDYCMPGMTGYELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVKL 147
I+TDY MPGMTGYELLKKIK+SSA RE+PVVIMSSENIL RIDRCLE+GAEDF++KPVKL
Sbjct: 83 IMTDYSMPGMTGYELLKKIKESSAFREVPVVIMSSENILPRIDRCLEEGAEDFLLKPVKL 142
Query: 148 SDVKRIKDYLTRDVNLGNEGRGINKRK 174
SDVKR++D L + +L + I KR+
Sbjct: 143 SDVKRLRDSLMKVEDLSFT-KSIQKRE 168
>TAIR|locus:2097870 [details] [associations]
symbol:RR5 "response regulator 5" species:3702
"Arabidopsis thaliana" [GO:0000156 "phosphorelay response regulator
activity" evidence=IEA;ISS;IMP] [GO:0000160 "phosphorelay signal
transduction system" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM;IDA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA;TAS] [GO:0009735 "response to cytokinin
stimulus" evidence=IEP] [GO:0009736 "cytokinin mediated signaling
pathway" evidence=RCA;IMP;TAS] [GO:0010114 "response to red light"
evidence=IMP] [GO:0007623 "circadian rhythm" evidence=RCA;IMP]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0006612 "protein targeting to membrane"
evidence=RCA] [GO:0009963 "positive regulation of flavonoid
biosynthetic process" evidence=RCA] [GO:0010363 "regulation of
plant-type hypersensitive response" evidence=RCA]
InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110 SMART:SM00448
GO:GO:0005739 GO:GO:0005634 GO:GO:0005737 GO:GO:0009536
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0006355 GO:GO:0007623
GO:GO:0006351 GO:GO:0010114 GO:GO:0009736 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG0784 EMBL:AL049658
HOGENOM:HOG000034820 KO:K14492 EMBL:AB008488 EMBL:AB010916
EMBL:AF057281 EMBL:AY072390 EMBL:AY114698 IPI:IPI00516847
PIR:T06673 PIR:T50855 PIR:T50856 RefSeq:NP_190393.1
UniGene:At.24915 ProteinModelPortal:Q9SB04 SMR:Q9SB04 IntAct:Q9SB04
STRING:Q9SB04 EnsemblPlants:AT3G48100.1 GeneID:823965
KEGG:ath:AT3G48100 GeneFarm:4122 TAIR:At3g48100 InParanoid:Q9SB04
OMA:LEANDIY PhylomeDB:Q9SB04 ProtClustDB:CLSN2684027
Genevestigator:Q9SB04 GermOnline:AT3G48100 Uniprot:Q9SB04
Length = 184
Score = 496 (179.7 bits), Expect = 2.0e-47, P = 2.0e-47
Identities = 99/131 (75%), Positives = 114/131 (87%)
Query: 30 VHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLD-EEQSINGFDGLKVDLI 88
+HVLAVDDS VDRK IERLL +SSCKVT VDS RALQ+LGLD E S GF+ LK++LI
Sbjct: 25 LHVLAVDDSMVDRKFIERLLRVSSCKVTVVDSATRALQYLGLDGENNSSVGFEDLKINLI 84
Query: 89 ITDYCMPGMTGYELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVKLS 148
+TDY MPGMTGYELLKKIK+SSA REIPVVIMSSENIL RIDRCLE+GAEDF++KPVKL+
Sbjct: 85 MTDYSMPGMTGYELLKKIKESSAFREIPVVIMSSENILPRIDRCLEEGAEDFLLKPVKLA 144
Query: 149 DVKRIKDYLTR 159
DVKR++D L +
Sbjct: 145 DVKRLRDSLMK 155
>TAIR|locus:2027237 [details] [associations]
symbol:ARR15 "response regulator 15" species:3702
"Arabidopsis thaliana" [GO:0000156 "phosphorelay response regulator
activity" evidence=IEA;ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM;IDA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA;TAS] [GO:0009735 "response to cytokinin
stimulus" evidence=IEP] [GO:0009736 "cytokinin mediated signaling
pathway" evidence=IGI;RCA;TAS] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0007623
"circadian rhythm" evidence=RCA] InterPro:IPR001789 Pfam:PF00072
PROSITE:PS50110 SMART:SM00448 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0005737 GO:GO:0006355
GO:GO:0006351 GO:GO:0009736 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 eggNOG:COG0784 EMBL:AC008263 EMBL:AC013258
EMBL:AF305720 IPI:IPI00538856 RefSeq:NP_177627.1 UniGene:At.11589
ProteinModelPortal:Q7G8V2 SMR:Q7G8V2 IntAct:Q7G8V2 STRING:Q7G8V2
EnsemblPlants:AT1G74890.1 GeneID:843828 KEGG:ath:AT1G74890
GeneFarm:4128 TAIR:At1g74890 HOGENOM:HOG000034820 InParanoid:Q7G8V2
KO:K14492 OMA:KISACKV PhylomeDB:Q7G8V2 ProtClustDB:CLSN2914197
Genevestigator:Q7G8V2 GermOnline:AT1G74890 Uniprot:Q7G8V2
Length = 206
Score = 495 (179.3 bits), Expect = 2.6e-47, P = 2.6e-47
Identities = 97/138 (70%), Positives = 119/138 (86%)
Query: 22 LSPSDTEEVHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFD 81
LS S + E+HVLAVDDSFVDRKVIERLL IS+CKVT V+SG RALQ+LGLD + +G
Sbjct: 10 LSSSSSPELHVLAVDDSFVDRKVIERLLKISACKVTTVESGTRALQYLGLDGDNGSSGLK 69
Query: 82 GLKVDLIITDYCMPGMTGYELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFI 141
LKV+LI+TDY MPG+TGYELLKKIK+SSALREIPVVIMSSENI RI++C+ +GAE+F+
Sbjct: 70 DLKVNLIVTDYSMPGLTGYELLKKIKESSALREIPVVIMSSENIQPRIEQCMIEGAEEFL 129
Query: 142 VKPVKLSDVKRIKDYLTR 159
+KPVKL+DVKR+K+ + R
Sbjct: 130 LKPVKLADVKRLKELIMR 147
>TAIR|locus:2011286 [details] [associations]
symbol:ARR7 "response regulator 7" species:3702
"Arabidopsis thaliana" [GO:0000156 "phosphorelay response regulator
activity" evidence=IEA;ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=IEA;TAS] [GO:0005634 "nucleus"
evidence=ISM;IDA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA;TAS] [GO:0009736 "cytokinin mediated
signaling pathway" evidence=RCA;IMP;TAS] [GO:0019827 "stem cell
maintenance" evidence=IMP] [GO:0009735 "response to cytokinin
stimulus" evidence=IEP] [GO:0005515 "protein binding" evidence=IPI]
[GO:0010200 "response to chitin" evidence=IEP] [GO:0007623
"circadian rhythm" evidence=RCA] [GO:0010029 "regulation of seed
germination" evidence=RCA] [GO:0031537 "regulation of anthocyanin
metabolic process" evidence=RCA] [GO:0048831 "regulation of shoot
system development" evidence=RCA] InterPro:IPR001789 Pfam:PF00072
PROSITE:PS50110 SMART:SM00448 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0006355 GO:GO:0006351
GO:GO:0010200 GO:GO:0009736 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 HOGENOM:HOG000034820 KO:K14492
ProtClustDB:CLSN2914197 eggNOG:COG3706 EMBL:AB008490 EMBL:AC068602
IPI:IPI00536268 PIR:T50854 RefSeq:NP_173339.1 UniGene:At.238
ProteinModelPortal:Q9ZWS7 SMR:Q9ZWS7 IntAct:Q9ZWS7 STRING:Q9ZWS7
EnsemblPlants:AT1G19050.1 GeneID:838487 KEGG:ath:AT1G19050
GeneFarm:4124 TAIR:At1g19050 InParanoid:Q9ZWS7 OMA:LRISSCK
PhylomeDB:Q9ZWS7 Genevestigator:Q9ZWS7 GermOnline:AT1G19050
GO:GO:0019827 Uniprot:Q9ZWS7
Length = 206
Score = 490 (177.5 bits), Expect = 8.8e-47, P = 8.8e-47
Identities = 104/165 (63%), Positives = 128/165 (77%)
Query: 19 GFDLSPSDTEEVHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSIN 78
G DL+ + T E+HVLAVDDS VDRKVIERLL ISSCKVT V+SG RALQ+LGLD + +
Sbjct: 14 GGDLTVT-TPELHVLAVDDSIVDRKVIERLLRISSCKVTTVESGTRALQYLGLDGGKGAS 72
Query: 79 GFDGLKVDLIITDYCMPGMTGYELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAE 138
LKV+LI+TDY MPG++GY+LLKKIK+SSA RE+PVVIMSSENIL RI CL++GAE
Sbjct: 73 NLKDLKVNLIVTDYSMPGLSGYDLLKKIKESSAFREVPVVIMSSENILPRIQECLKEGAE 132
Query: 139 DFIVKPVKLSDVKRIKDYLTRDVNLGNEGRGI---NKRKARESCD 180
+F++KPVKL+DVKRIK + R N E + + NKRK +E D
Sbjct: 133 EFLLKPVKLADVKRIKQLIMR--NEAEECKILSHSNKRKLQEDSD 175
>TAIR|locus:2102509 [details] [associations]
symbol:RR17 "response regulator 17" species:3702
"Arabidopsis thaliana" [GO:0000156 "phosphorelay response regulator
activity" evidence=IEA;ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA;TAS] [GO:0009736 "cytokinin mediated
signaling pathway" evidence=TAS] InterPro:IPR001789 Pfam:PF00072
PROSITE:PS50110 SMART:SM00448 GO:GO:0005739 GO:GO:0005634
GO:GO:0009536 EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0006355
GO:GO:0006351 GO:GO:0009736 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 eggNOG:COG0784 HOGENOM:HOG000034820 KO:K14492
EMBL:AF305722 EMBL:AL163972 IPI:IPI00540746 PIR:T49039
RefSeq:NP_567037.1 UniGene:At.5240 ProteinModelPortal:Q9FPR6
SMR:Q9FPR6 STRING:Q9FPR6 EnsemblPlants:AT3G56380.1 GeneID:824805
KEGG:ath:AT3G56380 GeneFarm:4130 TAIR:At3g56380 InParanoid:Q9FPR6
OMA:MEEELHV PhylomeDB:Q9FPR6 ProtClustDB:CLSN2917444
Genevestigator:Q9FPR6 GermOnline:AT3G56380 Uniprot:Q9FPR6
Length = 153
Score = 424 (154.3 bits), Expect = 8.7e-40, P = 8.7e-40
Identities = 80/131 (61%), Positives = 109/131 (83%)
Query: 28 EEVHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDG-LKVD 86
EE+HVLAVDD+ +DRK++ER+L ISSCKVT ++G RAL++LGL + Q + +KV+
Sbjct: 18 EELHVLAVDDNLIDRKLVERILKISSCKVTTAENGLRALEYLGLGDPQQTDSLTNVMKVN 77
Query: 87 LIITDYCMPGMTGYELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVK 146
LIITDYCMPGMTG+ELLKK+K+SS L+E+PVVI+SSENI RI++CL GA+ F+ KP+K
Sbjct: 78 LIITDYCMPGMTGFELLKKVKESSNLKEVPVVILSSENIPTRINKCLASGAQMFMQKPLK 137
Query: 147 LSDVKRIKDYL 157
LSDV+++K +L
Sbjct: 138 LSDVEKLKCHL 148
>TAIR|locus:2080590 [details] [associations]
symbol:ARR9 "response regulator 9" species:3702
"Arabidopsis thaliana" [GO:0000156 "phosphorelay response regulator
activity" evidence=IEA;ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=IEA;IPI] [GO:0005634 "nucleus"
evidence=ISM;IDA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA;TAS] [GO:0005515 "protein binding"
evidence=IPI] [GO:0009736 "cytokinin mediated signaling pathway"
evidence=RCA;IMP;TAS] [GO:0007623 "circadian rhythm"
evidence=RCA;IMP] [GO:0009735 "response to cytokinin stimulus"
evidence=IEP] [GO:0009740 "gibberellic acid mediated signaling
pathway" evidence=RCA] [GO:0010162 "seed dormancy process"
evidence=RCA] InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110
SMART:SM00448 GO:GO:0005634 GO:GO:0009536 EMBL:CP002686
GenomeReviews:BA000014_GR GO:GO:0006355 GO:GO:0007623 GO:GO:0006351
GO:GO:0009736 GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
HOGENOM:HOG000034820 KO:K14492 eggNOG:COG3706
ProtClustDB:CLSN2683767 EMBL:AB010918 EMBL:AL138655 EMBL:AY090234
EMBL:AY133571 IPI:IPI00543561 PIR:T47764 RefSeq:NP_191263.1
UniGene:At.245 ProteinModelPortal:O80366 SMR:O80366 IntAct:O80366
STRING:O80366 EnsemblPlants:AT3G57040.1 GeneID:824871
KEGG:ath:AT3G57040 GeneFarm:4126 TAIR:At3g57040 InParanoid:O80366
OMA:GISTDRA PhylomeDB:O80366 Genevestigator:O80366
GermOnline:AT3G57040 Uniprot:O80366
Length = 234
Score = 416 (151.5 bits), Expect = 6.1e-39, P = 6.1e-39
Identities = 86/148 (58%), Positives = 112/148 (75%)
Query: 29 EVHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGL---DEEQSINGFDG--- 82
+ HVLAVDDS DRK+IERLL SSC+VT VDSG +AL+FLGL + N F
Sbjct: 8 QFHVLAVDDSLFDRKLIERLLQKSSCQVTTVDSGSKALEFLGLRQSTDSNDPNAFSKAPV 67
Query: 83 ----LKVDLIITDYCMPGMTGYELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAE 138
++V+LIITDYCMPGMTGY+LLKK+K+SSA R+IPVVIMSSEN+ ARI RCLE+GAE
Sbjct: 68 NHQVVEVNLIITDYCMPGMTGYDLLKKVKESSAFRDIPVVIMSSENVPARISRCLEEGAE 127
Query: 139 DFIVKPVKLSDVKRIKDYLTRDVNLGNE 166
+F +KPV+L+D+ ++K ++ + L N+
Sbjct: 128 EFFLKPVRLADLNKLKPHMMK-TKLKNQ 154
>TAIR|locus:2040282 [details] [associations]
symbol:RR3 "response regulator 3" species:3702
"Arabidopsis thaliana" [GO:0000156 "phosphorelay response regulator
activity" evidence=IEA;ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=IEA;ISS] [GO:0005634 "nucleus"
evidence=ISM;IDA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA;TAS] [GO:0009736 "cytokinin mediated
signaling pathway" evidence=RCA;IMP;TAS] [GO:0007623 "circadian
rhythm" evidence=RCA;IMP] [GO:0005515 "protein binding"
evidence=IPI] [GO:0010029 "regulation of seed germination"
evidence=RCA] [GO:0031537 "regulation of anthocyanin metabolic
process" evidence=RCA] [GO:0048831 "regulation of shoot system
development" evidence=RCA] InterPro:IPR001789 Pfam:PF00072
PROSITE:PS50110 SMART:SM00448 GO:GO:0005634 GO:GO:0009536
EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0006355 GO:GO:0007623
GO:GO:0006351 GO:GO:0009736 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 HOGENOM:HOG000034820 KO:K14492 eggNOG:COG3706
EMBL:AB010917 EMBL:AC005662 EMBL:AY074643 IPI:IPI00535987
PIR:T48853 RefSeq:NP_181663.1 UniGene:At.244
ProteinModelPortal:O80365 SMR:O80365 IntAct:O80365 STRING:O80365
EnsemblPlants:AT2G41310.1 GeneID:818730 KEGG:ath:AT2G41310
GeneFarm:4125 TAIR:At2g41310 InParanoid:O80365 OMA:METESKF
PhylomeDB:O80365 ProtClustDB:CLSN2683767 Genevestigator:O80365
GermOnline:AT2G41310 Uniprot:O80365
Length = 225
Score = 412 (150.1 bits), Expect = 1.6e-38, P = 1.6e-38
Identities = 84/143 (58%), Positives = 111/143 (77%)
Query: 26 DTE-EVHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLD-EEQSINGFDG- 82
+TE + HVLAVDDS DRK+IERLL SSC+VT VDSG +AL+FLGL ++ N
Sbjct: 4 ETESKFHVLAVDDSLFDRKMIERLLQKSSCQVTTVDSGSKALEFLGLRVDDNDPNALSTS 63
Query: 83 ------LKVDLIITDYCMPGMTGYELLKKIKDSSALREIPVVIMSSENILARIDRCLEDG 136
++++LIITDYCMPGMTGY+LLKK+K+S+A R IPVVIMSSEN+ ARI RCLE+G
Sbjct: 64 PQIHQEVEINLIITDYCMPGMTGYDLLKKVKESAAFRSIPVVIMSSENVPARISRCLEEG 123
Query: 137 AEDFIVKPVKLSDVKRIKDYLTR 159
AE+F +KPVKL+D+ ++K ++ +
Sbjct: 124 AEEFFLKPVKLADLTKLKPHMMK 146
>UNIPROTKB|Q4GZK2 [details] [associations]
symbol:rr9 "Type A response regulator 9" species:39946
"Oryza sativa Indica Group" [GO:0009735 "response to cytokinin
stimulus" evidence=IC] InterPro:IPR001789 Pfam:PF00072
PROSITE:PS50110 SMART:SM00448 GO:GO:0005634 GO:GO:0009735
GO:GO:0006355 GO:GO:0035556 GO:GO:0007623 GO:GO:0009736
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG0784
EMBL:CM000136 EMBL:AJ938078 STRING:Q4GZK2 Uniprot:Q4GZK2
Length = 201
Score = 406 (148.0 bits), Expect = 7.0e-38, P = 7.0e-38
Identities = 84/134 (62%), Positives = 107/134 (79%)
Query: 31 HVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGL-DEEQSINGFDG----LKV 85
HVLAVDDS DRK+IERLL SS +VT VDSG +AL+FLGL D E S + V
Sbjct: 10 HVLAVDDSLPDRKLIERLLKTSSFQVTTVDSGSKALEFLGLHDHEDSPISTQSDQQEVAV 69
Query: 86 DLIITDYCMPGMTGYELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPV 145
+LIITDYCMPGMTGY+LLKKIK+SS LR+IPVVIMSS+NI +RI+RCLE+GA++F +KPV
Sbjct: 70 NLIITDYCMPGMTGYDLLKKIKESSYLRDIPVVIMSSDNIPSRINRCLEEGADEFFLKPV 129
Query: 146 KLSDVKRIKDYLTR 159
+LSD+ ++K ++ +
Sbjct: 130 RLSDMSKLKPHILK 143
>UNIPROTKB|Q4GZK7 [details] [associations]
symbol:rr4 "Type A response regulator 4" species:39946
"Oryza sativa Indica Group" [GO:0009735 "response to cytokinin
stimulus" evidence=IC] InterPro:IPR001789 Pfam:PF00072
PROSITE:PS50110 SMART:SM00448 GO:GO:0009735 GO:GO:0006355
GO:GO:0035556 GO:GO:0005622 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 eggNOG:COG0784 HOGENOM:HOG000034820 EMBL:CM000126
EMBL:AJ938073 Uniprot:Q4GZK7
Length = 232
Score = 406 (148.0 bits), Expect = 7.0e-38, P = 7.0e-38
Identities = 86/144 (59%), Positives = 111/144 (77%)
Query: 26 DTEE-VHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEE-------QSI 77
D E HVLAVDDS +DRK+IE LL SS +VT VDSG +AL+ LGL +E S
Sbjct: 5 DAESRFHVLAVDDSLIDRKLIEMLLKNSSYQVTTVDSGSKALELLGLRDEGDDSSSSPSS 64
Query: 78 NGFDGLKVD--LIITDYCMPGMTGYELLKKIKDSSALREIPVVIMSSENILARIDRCLED 135
+ D ++D LIITDYCMPGMTGY+LLK++K SS+L++IPVVIMSSEN+ ARI+RCLED
Sbjct: 65 SSPDHQEIDVNLIITDYCMPGMTGYDLLKRVKGSSSLKDIPVVIMSSENVPARINRCLED 124
Query: 136 GAEDFIVKPVKLSDVKRIKDYLTR 159
GAE+F +KPVKL+D+K++K +L +
Sbjct: 125 GAEEFFLKPVKLADMKKLKSHLLK 148
>UNIPROTKB|Q4GZK8 [details] [associations]
symbol:rr3 "Type A response regulator 3" species:39946
"Oryza sativa Indica Group" [GO:0009735 "response to cytokinin
stimulus" evidence=IC] InterPro:IPR001789 Pfam:PF00072
PROSITE:PS50110 SMART:SM00448 GO:GO:0005634 GO:GO:0005737
GO:GO:0009735 GO:GO:0006355 GO:GO:0035556 GO:GO:0007623
GO:GO:0010114 GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
eggNOG:COG0784 HOGENOM:HOG000034820 EMBL:CM000127 EMBL:AJ938072
STRING:Q4GZK8 Uniprot:Q4GZK8
Length = 131
Score = 362 (132.5 bits), Expect = 3.2e-33, P = 3.2e-33
Identities = 76/125 (60%), Positives = 93/125 (74%)
Query: 29 EVHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLI 88
E HVLAVDDS VDR VI RLL S +VT VDSG+RAL+ L LD V +I
Sbjct: 10 EPHVLAVDDSIVDRTVISRLLRSSKYRVTTVDSGKRALEVLSLDRN----------VHMI 59
Query: 89 ITDYCMPGMTGYELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVKLS 148
ITDYCMP MTG++LLK++K+S+ L+EIPVV+MSSEN RI RCLE+GAEDF++KPV+ S
Sbjct: 60 ITDYCMPEMTGFDLLKRVKESAELKEIPVVLMSSENSPTRIRRCLEEGAEDFLIKPVRPS 119
Query: 149 DVKRI 153
DV R+
Sbjct: 120 DVSRL 124
>UNIPROTKB|Q4GZK5 [details] [associations]
symbol:rr6 "Type A response regulator 6" species:39946
"Oryza sativa Indica Group" [GO:0009735 "response to cytokinin
stimulus" evidence=IC] InterPro:IPR001789 Pfam:PF00072
PROSITE:PS50110 SMART:SM00448 GO:GO:0005634 GO:GO:0005737
GO:GO:0009735 GO:GO:0006355 GO:GO:0035556 GO:GO:0007623
GO:GO:0010114 GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
EMBL:AJ938075 ProteinModelPortal:Q4GZK5 KEGG:dosa:Os04t0673300-01
Gramene:Q4GZK5 Uniprot:Q4GZK5
Length = 170
Score = 352 (129.0 bits), Expect = 3.7e-32, P = 3.7e-32
Identities = 75/125 (60%), Positives = 94/125 (75%)
Query: 29 EVHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLI 88
E+HVLAVDDS VDR VI ++L S +VT V+S RAL+ L L ++N +I
Sbjct: 49 EMHVLAVDDSSVDRAVIAKILRSSKYRVTTVESATRALELLCLGLVPNVN--------MI 100
Query: 89 ITDYCMPGMTGYELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVKLS 148
ITDY MPGMTGYELLK++K+SS L+EIPVVIMSSEN+ RI RCLE+GAEDF++KPV+ S
Sbjct: 101 ITDYWMPGMTGYELLKRVKESSQLKEIPVVIMSSENVPNRISRCLEEGAEDFLLKPVRPS 160
Query: 149 DVKRI 153
DV R+
Sbjct: 161 DVSRL 165
>UNIPROTKB|Q4GZL0 [details] [associations]
symbol:rr1 "Type A response regulator 1" species:39946
"Oryza sativa Indica Group" [GO:0009735 "response to cytokinin
stimulus" evidence=IC] InterPro:IPR001789 Pfam:PF00072
PROSITE:PS50110 SMART:SM00448 GO:GO:0009735 GO:GO:0006355
GO:GO:0035556 GO:GO:0005622 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 EMBL:CM000129 EMBL:AJ938070 eggNOG:NOG76823
Uniprot:Q4GZL0
Length = 231
Score = 327 (120.2 bits), Expect = 1.6e-29, P = 1.6e-29
Identities = 72/144 (50%), Positives = 99/144 (68%)
Query: 32 VLAVDDSFVDRKVIERLLTISSCK----VTAVDSGRRALQFLGLDEEQSINGFDGLKVDL 87
VL VDDS VDR+V++ LL+ S+C V AVDS ++A++FLGL EE +D+
Sbjct: 10 VLLVDDSPVDRRVVQLLLSSSACAGSFHVIAVDSAKKAMEFLGLKEEGKEQA-----IDM 64
Query: 88 IITDYCMPGMTGYELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVKL 147
++TDYCMP MTGYELLK IK S L+ IPV++MSSEN RI RC+ GAEDFIVKP++
Sbjct: 65 VLTDYCMPEMTGYELLKAIKALSPLKPIPVIVMSSENEPQRISRCMNAGAEDFIVKPLQS 124
Query: 148 SDVKRIKDYL---TRDVNLGNEGR 168
DV+R++ T+ + G++G+
Sbjct: 125 KDVQRLRKCSPANTQCCDAGSDGK 148
>UNIPROTKB|Q4GZK4 [details] [associations]
symbol:rr7 "Type A response regulator 7" species:39946
"Oryza sativa Indica Group" [GO:0009735 "response to cytokinin
stimulus" evidence=IC] InterPro:IPR001789 Pfam:PF00072
PROSITE:PS50110 SMART:SM00448 GO:GO:0009735 GO:GO:0006355
GO:GO:0035556 GO:GO:0005622 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 HOGENOM:HOG000034820 EMBL:AJ938076
ProteinModelPortal:Q4GZK4 KEGG:dosa:Os07t0449700-01 Gramene:Q4GZK4
Uniprot:Q4GZK4
Length = 206
Score = 325 (119.5 bits), Expect = 2.7e-29, P = 2.7e-29
Identities = 77/142 (54%), Positives = 95/142 (66%)
Query: 15 DEIDGFDLSPSDTEEV---HVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGL 71
DE D D D EE +V+AVDDS VDR VI LL S + DSG+RAL+ LG
Sbjct: 73 DEDDDDDDDEDDEEEAAPPYVMAVDDSSVDRAVITALLRRSKYR----DSGKRALEILGS 128
Query: 72 DEEQSINGFDGLKVDLIITDYCMPGMTGYELLKKIKDSSALREIPVVIMSSENILARIDR 131
+ V +IITDY MP MTGY+LLKKIK+SS L++IPVVIMSSEN+ RI R
Sbjct: 129 EPN----------VSMIITDYWMPEMTGYDLLKKIKESSELKQIPVVIMSSENVPTRISR 178
Query: 132 CLEDGAEDFIVKPVKLSDVKRI 153
CLE+GAEDF++KPV+ +D+ RI
Sbjct: 179 CLEEGAEDFLLKPVRPADISRI 200
>UNIPROTKB|Q4GZK3 [details] [associations]
symbol:rr8 "Type A response regulator 8" species:39946
"Oryza sativa Indica Group" [GO:0009735 "response to cytokinin
stimulus" evidence=IC] InterPro:IPR001789 Pfam:PF00072
PROSITE:PS50110 SMART:SM00448 GO:GO:0009735 GO:GO:0006355
GO:GO:0035556 GO:GO:0005622 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 EMBL:AJ938077 ProteinModelPortal:Q4GZK3
STRING:Q4GZK3 KEGG:dosa:Os08t0376700-01 KEGG:dosa:Os08t0377200-01
Gramene:Q4GZK3 Uniprot:Q4GZK3
Length = 121
Score = 293 (108.2 bits), Expect = 6.6e-26, P = 6.6e-26
Identities = 64/127 (50%), Positives = 84/127 (66%)
Query: 31 HVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIIT 90
HVL VDD+ VDR V+ L + +VTAV+S +AL FL D E VD+I++
Sbjct: 5 HVLVVDDTHVDRHVVSMALMRHNVRVTAVESVMQALMFL--DSEHD--------VDMIVS 54
Query: 91 DYCMPGMTGYELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVKLSDV 150
DYCMP MTGY LL ++K S L +PVVI SS+NI RI +CL+ GA+D+I+KPVK+ DV
Sbjct: 55 DYCMPDMTGYNLLMEVKKSPKLAHLPVVIASSDNIPERIRKCLDGGAKDYILKPVKIVDV 114
Query: 151 KRIKDYL 157
RI Y+
Sbjct: 115 PRIMKYI 121
>UNIPROTKB|Q4GZK9 [details] [associations]
symbol:rr2 "Type A response regulator 2" species:39946
"Oryza sativa Indica Group" [GO:0009735 "response to cytokinin
stimulus" evidence=IC] InterPro:IPR001789 Pfam:PF00072
PROSITE:PS50110 SMART:SM00448 GO:GO:0009735 GO:GO:0006355
GO:GO:0035556 GO:GO:0005622 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 HOGENOM:HOG000034820 EMBL:AJ938071
ProteinModelPortal:Q4GZK9 KEGG:dosa:Os02t0557800-01 Gramene:Q4GZK9
Uniprot:Q4GZK9
Length = 252
Score = 248 (92.4 bits), Expect = 3.9e-21, P = 3.9e-21
Identities = 53/109 (48%), Positives = 74/109 (67%)
Query: 56 VTAVDSGRRALQFLGL---DEEQ-------SINGFDGLKVDLIITDYCMPGMTGYELLKK 105
VTAVDSG++A++ LG D + + + +D+++TDYCMP MTGY+LLK
Sbjct: 45 VTAVDSGKKAMELLGRRRGDRDHLTPSSPAAAAAANDQAIDIVLTDYCMPEMTGYDLLKA 104
Query: 106 IKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVKLSDVKRIK 154
IK + IPVV+MSSEN RI RCL GAEDFI+KP+K++DV+R++
Sbjct: 105 IKALGSPNPIPVVVMSSENEPQRISRCLTAGAEDFILKPLKMNDVQRLR 153
>TAIR|locus:2044376 [details] [associations]
symbol:PRR9 "pseudo-response regulator 9" species:3702
"Arabidopsis thaliana" [GO:0000156 "phosphorelay response regulator
activity" evidence=IEA;ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA;TAS] [GO:0007623 "circadian rhythm"
evidence=IMP;TAS] [GO:0005515 "protein binding" evidence=IPI]
[GO:0009266 "response to temperature stimulus" evidence=IGI]
[GO:0010017 "red or far-red light signaling pathway" evidence=IMP]
[GO:0003677 "DNA binding" evidence=IPI] [GO:0045892 "negative
regulation of transcription, DNA-dependent" evidence=IDA]
InterPro:IPR001789 InterPro:IPR010402 Pfam:PF00072 Pfam:PF06203
PROSITE:PS50110 PROSITE:PS51017 SMART:SM00448 GO:GO:0005634
GO:GO:0045892 EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0035556
GO:GO:0003677 GO:GO:0007623 GO:GO:0006351 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034018
GO:GO:0010017 GO:GO:0009266 EMBL:AB046953 EMBL:AF272040
EMBL:AC005310 EMBL:AY099676 EMBL:AY128856 IPI:IPI00545462
PIR:T02680 RefSeq:NP_566085.1 UniGene:At.1675 UniGene:At.65052
ProteinModelPortal:Q8L500 SMR:Q8L500 STRING:Q8L500 PRIDE:Q8L500
EnsemblPlants:AT2G46790.1 GeneID:819292 KEGG:ath:AT2G46790
GeneFarm:4360 TAIR:At2g46790 eggNOG:COG0745 InParanoid:Q8L500
KO:K12128 OMA:HEACKNI PhylomeDB:Q8L500 ProtClustDB:CLSN2688972
Genevestigator:Q8L500 GermOnline:AT2G46790 Uniprot:Q8L500
Length = 468
Score = 182 (69.1 bits), Expect = 2.5e-13, P = 2.5e-13
Identities = 41/137 (29%), Positives = 81/137 (59%)
Query: 30 VHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLII 89
+ VL V+ + R++I LL KV AV G A + L +E+S N +DLI+
Sbjct: 37 LRVLLVESDYSTRQIITALLRKCCYKVVAVSDGLAAWEVL---KEKSHN------IDLIL 87
Query: 90 TDYCMPGMTGYELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVKLSD 149
T+ +P ++G+ LL + + A + IPV++MSS++ + + +C+ GA D+++KP++ ++
Sbjct: 88 TELDLPSISGFALLALVMEHEACKNIPVIMMSSQDSIKMVLKCMLRGAADYLIKPMRKNE 147
Query: 150 VKRIKDYLTRDVNLGNE 166
+K + ++ R + L ++
Sbjct: 148 LKNLWQHVWRRLTLRDD 164
>DICTYBASE|DDB_G0284331 [details] [associations]
symbol:regA "response regulator receiver
domain-containing protein" species:44689 "Dictyostelium discoideum"
[GO:0030587 "sorocarp development" evidence=IMP] [GO:0051281
"positive regulation of release of sequestered calcium ion into
cytosol" evidence=IMP] [GO:0051279 "regulation of release of
sequestered calcium ion into cytosol" evidence=IMP] [GO:0046058
"cAMP metabolic process" evidence=IMP] [GO:0031276 "negative
regulation of lateral pseudopodium assembly" evidence=IMP]
[GO:0004115 "3',5'-cyclic-AMP phosphodiesterase activity"
evidence=IDA;IMP] [GO:0005622 "intracellular" evidence=TAS]
[GO:0006970 "response to osmotic stress" evidence=TAS] [GO:0030435
"sporulation resulting in formation of a cellular spore"
evidence=IMP] [GO:0007275 "multicellular organismal development"
evidence=IMP] [GO:0047555 "3',5'-cyclic-GMP phosphodiesterase
activity" evidence=IDA] [GO:0006198 "cAMP catabolic process"
evidence=IDA] [GO:0035556 "intracellular signal transduction"
evidence=IEA] [GO:0008081 "phosphoric diester hydrolase activity"
evidence=IEA] [GO:0007165 "signal transduction" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0004114 "3',5'-cyclic-nucleotide
phosphodiesterase activity" evidence=IEA] [GO:0003824 "catalytic
activity" evidence=IEA] [GO:0000160 "phosphorelay signal
transduction system" evidence=IEA] [GO:0000156 "phosphorelay
response regulator activity" evidence=IEA] [GO:0046872 "metal ion
binding" evidence=IEA] [GO:0030552 "cAMP binding" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
InterPro:IPR001789 InterPro:IPR002073 InterPro:IPR003607
InterPro:IPR023088 InterPro:IPR023174 Pfam:PF00072 Pfam:PF00233
PRINTS:PR00387 PROSITE:PS00126 PROSITE:PS50110 SMART:SM00448
SMART:SM00471 dictyBase:DDB_G0284331 GO:GO:0005829
GenomeReviews:CM000153_GR GO:GO:0006355 GO:GO:0035556 GO:GO:0046872
GO:GO:0030435 GO:GO:0030587 GO:GO:0005622 GO:GO:0006970
GO:GO:0051281 GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
eggNOG:COG3706 EMBL:AAFI02000064 GO:GO:0030552 GO:GO:0031276
GO:GO:0004115 GO:GO:0006198 Gene3D:1.10.1300.10 EMBL:U60170
EMBL:AJ005398 RefSeq:XP_638612.1 ProteinModelPortal:Q23917
STRING:Q23917 EnsemblProtists:DDB0191479 GeneID:8624583
KEGG:ddi:DDB_G0284331 OMA:SHYETIC ProtClustDB:CLSZ2728943
Uniprot:Q23917
Length = 793
Score = 174 (66.3 bits), Expect = 4.5e-12, P = 4.5e-12
Identities = 46/150 (30%), Positives = 80/150 (53%)
Query: 13 ISDEIDGFDLSPSDTEEVHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLD 72
+SD D + SPS +V +L DD V RK++ LL VT V +G A +++
Sbjct: 148 VSDFSDEY--SPS---KVRILVADDDDVQRKILNNLLKKFHYNVTLVPNGEIAWEYINKG 202
Query: 73 EEQSINGFDGLKVDLIITDYCMPGMTGYELLKKIKDSSALREIPVVIMSSENILARI-DR 131
++ K DL++TD MP +TG++LL++I D R IPV++MS + + +
Sbjct: 203 QQ---------KYDLVLTDVMMPHITGFDLLQRINDHPVHRHIPVILMSGTAVDYKYAND 253
Query: 132 CLEDGAEDFIVKPVKLSDVKRIKDYLTRDV 161
++ G +DF+ KP+ +K+ D + + +
Sbjct: 254 TIKIGGQDFLTKPIAKELLKKKIDTVLQSI 283
>TAIR|locus:2151206 [details] [associations]
symbol:PRR7 "pseudo-response regulator 7" species:3702
"Arabidopsis thaliana" [GO:0000156 "phosphorelay response regulator
activity" evidence=IEA;ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM;IDA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA;TAS] [GO:0007623 "circadian rhythm"
evidence=IMP;TAS] [GO:0010017 "red or far-red light signaling
pathway" evidence=IMP] [GO:0005739 "mitochondrion" evidence=IDA]
[GO:0009266 "response to temperature stimulus" evidence=IGI]
[GO:0003677 "DNA binding" evidence=IPI] [GO:0045892 "negative
regulation of transcription, DNA-dependent" evidence=IDA]
[GO:0009639 "response to red or far red light" evidence=RCA]
[GO:0042752 "regulation of circadian rhythm" evidence=RCA]
[GO:0048574 "long-day photoperiodism, flowering" evidence=RCA]
InterPro:IPR001789 InterPro:IPR010402 Pfam:PF00072 Pfam:PF06203
PROSITE:PS50110 PROSITE:PS51017 SMART:SM00448 GO:GO:0005739
GO:GO:0005634 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0045892
GO:GO:0035556 GO:GO:0003677 GO:GO:0007623 GO:GO:0006351
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172 EMBL:AB046954
EMBL:AL162973 EMBL:AY039943 EMBL:AY142560 IPI:IPI00520937
PIR:T48302 RefSeq:NP_568107.1 UniGene:At.20552
ProteinModelPortal:Q93WK5 SMR:Q93WK5 STRING:Q93WK5 PRIDE:Q93WK5
EnsemblPlants:AT5G02810.1 GeneID:831793 KEGG:ath:AT5G02810
GeneFarm:4348 TAIR:At5g02810 eggNOG:COG3437 HOGENOM:HOG000034018
InParanoid:Q93WK5 KO:K12129 OMA:HDERNIL PhylomeDB:Q93WK5
ProtClustDB:CLSN2917538 Genevestigator:Q93WK5 GermOnline:AT5G02810
GO:GO:0010017 GO:GO:0009266 Uniprot:Q93WK5
Length = 727
Score = 165 (63.1 bits), Expect = 3.6e-11, P = 3.6e-11
Identities = 39/130 (30%), Positives = 74/130 (56%)
Query: 30 VHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLII 89
+ VL V++ R ++ LL S +V +G +A + L + +N +D+++
Sbjct: 78 IRVLLVENDDCTRYIVTALLRNCSYEVVEASNGIQAWKVL-----EDLNNH----IDIVL 128
Query: 90 TDYCMPGMTGYELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVKLSD 149
T+ MP ++G LL KI + + R IPV++MSS + + + +CL GA DF+VKP++ ++
Sbjct: 129 TEVIMPYLSGIGLLCKILNHKSRRNIPVIMMSSHDSMGLVFKCLSKGAVDFLVKPIRKNE 188
Query: 150 VKRIKDYLTR 159
+K + ++ R
Sbjct: 189 LKILWQHVWR 198
>UNIPROTKB|Q8EC92 [details] [associations]
symbol:cheV "Chemotaxis signal transduction system response
regulator CheV" species:211586 "Shewanella oneidensis MR-1"
[GO:0004871 "signal transducer activity" evidence=ISS] [GO:0006935
"chemotaxis" evidence=ISS] InterPro:IPR001789 InterPro:IPR002545
Pfam:PF00072 Pfam:PF01584 PROSITE:PS50110 PROSITE:PS50851
SMART:SM00260 SMART:SM00448 GO:GO:0006355 GO:GO:0035556
GO:GO:0016740 GO:GO:0005622 GO:GO:0006935 GO:GO:0004871
EMBL:AE014299 GenomeReviews:AE014299_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HSSP:P39928 SUPFAM:SSF50341
HOGENOM:HOG000255027 KO:K03415 InterPro:IPR024181 PIRSF:PIRSF002867
OMA:QVSRCLQ RefSeq:NP_718806.1 ProteinModelPortal:Q8EC92
GeneID:1170945 KEGG:son:SO_3252 PATRIC:23526188
ProtClustDB:CLSK2304491 Uniprot:Q8EC92
Length = 306
Score = 157 (60.3 bits), Expect = 4.7e-11, P = 4.7e-11
Identities = 45/131 (34%), Positives = 68/131 (51%)
Query: 13 ISDEIDGFDLSPSDTEEVHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLD 72
IS+E++ L+ T+ H++ +DDS V RK I R L + ++ GR AL L
Sbjct: 163 ISEEVNQ-QLTIDRTQHYHIMVIDDSAVARKQIIRSLESLNLQIDTAKDGREALDKLKAI 221
Query: 73 EEQSINGFDGLKVDLIITDYCMPGMTGYELLKKIKDSSALREIPVVIMSSENILARIDRC 132
+ N D ++ LII+D MP M GY L +I+D L+ I VV+ +S + +
Sbjct: 222 ASEMNNVAD--EIPLIISDIEMPEMDGYTLTAEIRDDPKLKNIKVVLHTSLSGVFNQAMV 279
Query: 133 LEDGAEDFIVK 143
+ GA DFI K
Sbjct: 280 QKVGANDFIAK 290
>TIGR_CMR|SO_3252 [details] [associations]
symbol:SO_3252 "chemotaxis protein CheV" species:211586
"Shewanella oneidensis MR-1" [GO:0004871 "signal transducer
activity" evidence=ISS] [GO:0006935 "chemotaxis" evidence=ISS]
InterPro:IPR001789 InterPro:IPR002545 Pfam:PF00072 Pfam:PF01584
PROSITE:PS50110 PROSITE:PS50851 SMART:SM00260 SMART:SM00448
GO:GO:0006355 GO:GO:0035556 GO:GO:0016740 GO:GO:0005622
GO:GO:0006935 GO:GO:0004871 EMBL:AE014299 GenomeReviews:AE014299_GR
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172 HSSP:P39928
SUPFAM:SSF50341 HOGENOM:HOG000255027 KO:K03415 InterPro:IPR024181
PIRSF:PIRSF002867 OMA:QVSRCLQ RefSeq:NP_718806.1
ProteinModelPortal:Q8EC92 GeneID:1170945 KEGG:son:SO_3252
PATRIC:23526188 ProtClustDB:CLSK2304491 Uniprot:Q8EC92
Length = 306
Score = 157 (60.3 bits), Expect = 4.7e-11, P = 4.7e-11
Identities = 45/131 (34%), Positives = 68/131 (51%)
Query: 13 ISDEIDGFDLSPSDTEEVHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLD 72
IS+E++ L+ T+ H++ +DDS V RK I R L + ++ GR AL L
Sbjct: 163 ISEEVNQ-QLTIDRTQHYHIMVIDDSAVARKQIIRSLESLNLQIDTAKDGREALDKLKAI 221
Query: 73 EEQSINGFDGLKVDLIITDYCMPGMTGYELLKKIKDSSALREIPVVIMSSENILARIDRC 132
+ N D ++ LII+D MP M GY L +I+D L+ I VV+ +S + +
Sbjct: 222 ASEMNNVAD--EIPLIISDIEMPEMDGYTLTAEIRDDPKLKNIKVVLHTSLSGVFNQAMV 279
Query: 133 LEDGAEDFIVK 143
+ GA DFI K
Sbjct: 280 QKVGANDFIAK 290
>TIGR_CMR|GSU_1285 [details] [associations]
symbol:GSU_1285 "sensory box sensor histidine
kinase/response regulator" species:243231 "Geobacter sulfurreducens
PCA" [GO:0000155 "phosphorelay sensor kinase activity"
evidence=ISS] [GO:0000156 "phosphorelay response regulator
activity" evidence=ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=ISS] InterPro:IPR000014
InterPro:IPR001789 InterPro:IPR003594 InterPro:IPR003661
InterPro:IPR004358 InterPro:IPR008207 InterPro:IPR009082
Pfam:PF00072 Pfam:PF00512 Pfam:PF02518 PRINTS:PR00344
PROSITE:PS50110 PROSITE:PS50112 SMART:SM00091 SMART:SM00387
SMART:SM00388 SMART:SM00448 InterPro:IPR005467 InterPro:IPR001610
GO:GO:0005524 GO:GO:0016020 GO:GO:0006355 GO:GO:0035556
GO:GO:0005622 EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0023014
SMART:SM00086 TIGRFAMs:TIGR00229 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 GO:GO:0000155 Gene3D:1.10.287.130
Gene3D:3.30.565.10 SUPFAM:SSF55874 SUPFAM:SSF47384 PROSITE:PS50109
SUPFAM:SSF47226 InterPro:IPR013656 Pfam:PF08448 RefSeq:NP_952338.1
PDB:2R78 PDBsum:2R78 ProteinModelPortal:Q74DN1 SMR:Q74DN1
GeneID:2688111 KEGG:gsu:GSU1285 PATRIC:22025341
HOGENOM:HOG000144300 OMA:AHTNSER
BioCyc:GSUL243231:GH27-1253-MONOMER EvolutionaryTrace:Q74DN1
Uniprot:Q74DN1
Length = 772
Score = 164 (62.8 bits), Expect = 5.1e-11, P = 5.1e-11
Identities = 41/124 (33%), Positives = 66/124 (53%)
Query: 32 VLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITD 91
VL VDDS V RKV+ LL +VT G AL +G + FD L++ D
Sbjct: 548 VLLVDDSAVSRKVVSLLLESDGHRVTFAGDGVEALAAIGRE------AFD-----LVLMD 596
Query: 92 YCMPGMTGYELLKKIKDSSAL--REIPVVIMSSENILARIDRCLEDGAEDFIVKPVKLSD 149
MP M G+E ++ I+ A +P++ +++ + + CLE GA+D++ KPV S+
Sbjct: 597 VQMPVMDGFEAMRAIRAGEAAGGARLPIIALTARALAGDRELCLEAGADDYLAKPVNFSE 656
Query: 150 VKRI 153
++R+
Sbjct: 657 LRRV 660
>TAIR|locus:2130095 [details] [associations]
symbol:RR2 "response regulator 2" species:3702
"Arabidopsis thaliana" [GO:0000156 "phosphorelay response regulator
activity" evidence=IEA;ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM;IDA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0003700 "sequence-specific DNA
binding transcription factor activity" evidence=ISS;IDA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0009736 "cytokinin
mediated signaling pathway" evidence=RCA;TAS] [GO:0009723 "response
to ethylene stimulus" evidence=IMP] [GO:0009735 "response to
cytokinin stimulus" evidence=IEP;IGI] [GO:0010150 "leaf senescence"
evidence=IMP] [GO:0009873 "ethylene mediated signaling pathway"
evidence=IMP] [GO:0010119 "regulation of stomatal movement"
evidence=IMP] [GO:0007623 "circadian rhythm" evidence=RCA]
[GO:0010029 "regulation of seed germination" evidence=RCA]
[GO:0031537 "regulation of anthocyanin metabolic process"
evidence=RCA] [GO:0048831 "regulation of shoot system development"
evidence=RCA] InterPro:IPR001005 InterPro:IPR001789
InterPro:IPR009057 Pfam:PF00072 Pfam:PF00249 PROSITE:PS50110
SMART:SM00448 GO:GO:0005634 EMBL:CP002687 GenomeReviews:CT486007_GR
GO:GO:0009873 GO:GO:0010119 GO:GO:0003677 GO:GO:0003700
GO:GO:0006351 GO:GO:0003682 GO:GO:0010150 Gene3D:1.10.10.60
SUPFAM:SSF46689 GO:GO:0009736 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 EMBL:Z97340 EMBL:AL161543 InterPro:IPR017930
InterPro:IPR006447 TIGRFAMs:TIGR01557 PROSITE:PS51294 KO:K14491
eggNOG:COG2204 InterPro:IPR017053 PIRSF:PIRSF036392
ProtClustDB:CLSN2680844 EMBL:AB016472 EMBL:AJ005196 EMBL:DQ473518
EMBL:DQ473519 EMBL:DQ473520 EMBL:DQ473521 EMBL:AK175378
EMBL:AK175737 EMBL:AK175959 EMBL:AK176614 IPI:IPI00518324
PIR:D71427 PIR:T51247 RefSeq:NP_193346.4 UniGene:At.21955
ProteinModelPortal:Q9ZWJ9 SMR:Q9ZWJ9 IntAct:Q9ZWJ9 STRING:Q9ZWJ9
PaxDb:Q9ZWJ9 PRIDE:Q9ZWJ9 EnsemblPlants:AT4G16110.1 GeneID:827297
KEGG:ath:AT4G16110 GeneFarm:3921 TAIR:At4g16110 InParanoid:Q9ZWJ9
OMA:ILERMLM PhylomeDB:Q9ZWJ9 Genevestigator:Q9ZWJ9
GermOnline:AT4G16110 Uniprot:Q9ZWJ9
Length = 664
Score = 148 (57.2 bits), Expect = 7.2e-11, Sum P(2) = 7.2e-11
Identities = 38/130 (29%), Positives = 72/130 (55%)
Query: 30 VHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLII 89
+ VL VDD ++ER+L +VT + AL L ++ NGFD ++I
Sbjct: 28 LRVLVVDDDPTCLMILERMLMTCLYRVTKCNRAESALSLL----RKNKNGFD-----IVI 78
Query: 90 TDYCMPGMTGYELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVKLSD 149
+D MP M G++LL+ + ++PV++MS+++ + + + + GA D+++KPV++
Sbjct: 79 SDVHMPDMDGFKLLEHV---GLEMDLPVIMMSADDSKSVVLKGVTHGAVDYLIKPVRIEA 135
Query: 150 VKRIKDYLTR 159
+K I ++ R
Sbjct: 136 LKNIWQHVVR 145
Score = 37 (18.1 bits), Expect = 7.2e-11, Sum P(2) = 7.2e-11
Identities = 7/13 (53%), Positives = 9/13 (69%)
Query: 165 NEGRGINKRKARE 177
NEG G + RK +E
Sbjct: 186 NEGNGRSSRKRKE 198
>TIGR_CMR|SPO_1953 [details] [associations]
symbol:SPO_1953 "phosphate regulon transcriptional
regulatory protein PhoB" species:246200 "Ruegeria pomeroyi DSS-3"
[GO:0000156 "phosphorelay response regulator activity"
evidence=ISS] [GO:0000160 "phosphorelay signal transduction system"
evidence=ISS] [GO:0006817 "phosphate ion transport" evidence=ISS]
InterPro:IPR001789 InterPro:IPR001867 InterPro:IPR011879
Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110 SMART:SM00448
SMART:SM00862 GO:GO:0006355 GO:GO:0035556 EMBL:CP000031
GenomeReviews:CP000031_GR GO:GO:0003677 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0005622 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 GO:GO:0006817 HOGENOM:HOG000034819 KO:K07657
TIGRFAMs:TIGR02154 RefSeq:YP_167188.1 ProteinModelPortal:Q5LS17
GeneID:3193549 KEGG:sil:SPO1953 PATRIC:23377237 OMA:STLMEKP
ProtClustDB:CLSK933701 Uniprot:Q5LS17
Length = 229
Score = 150 (57.9 bits), Expect = 9.4e-11, P = 9.4e-11
Identities = 38/133 (28%), Positives = 71/133 (53%)
Query: 28 EEVHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDL 87
++ VL V+D R+V+ L +V ++G A+ L +DE+ D+
Sbjct: 4 DQPSVLVVEDEMAQREVLAYNLEAEGFRVIRAENGEEAM--LLVDEDTP---------DI 52
Query: 88 IITDYCMPGMTGYELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVKL 147
I+ D+ MP ++G E+ +++K R IPV+++S+ + R LE GA+D++VKP +
Sbjct: 53 IVLDWMMPNLSGIEVCRRLKTRPETRSIPVIMLSARSEEVDKVRGLETGADDYVVKPYSV 112
Query: 148 SDVK-RIKDYLTR 159
++ R++ L R
Sbjct: 113 VELMARVRSQLRR 125
>TIGR_CMR|SO_0549 [details] [associations]
symbol:SO_0549 "chemotaxis protein CheY/response regulator
receiver domain protein" species:211586 "Shewanella oneidensis
MR-1" [GO:0004871 "signal transducer activity" evidence=ISS]
[GO:0006935 "chemotaxis" evidence=ISS] InterPro:IPR001789
Pfam:PF00072 PROSITE:PS50110 SMART:SM00448 GO:GO:0006355
GO:GO:0035556 GO:GO:0005622 EMBL:AE014299 GenomeReviews:AE014299_GR
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172 HSSP:P06657
KO:K03413 RefSeq:NP_716185.2 ProteinModelPortal:Q8EJB8
GeneID:1168418 KEGG:son:SO_0549 PATRIC:23520780
HOGENOM:HOG000221832 OMA:SEANDAH ProtClustDB:CLSK905805
Uniprot:Q8EJB8
Length = 265
Score = 151 (58.2 bits), Expect = 1.3e-10, P = 1.3e-10
Identities = 48/147 (32%), Positives = 74/147 (50%)
Query: 8 ASLRLISDEIDGFDLSPSDTEEVHVLAVDDSFVDRKVIERLLTISSCK-VTAVDSGRRAL 66
A++ L+S D DLS D +V VL VDDS + R VI+R + K +T + G +A+
Sbjct: 125 ATIDLLSH--DELDLSHFDVHDVRVLVVDDSRMARNVIKRTIGNLGIKLITEAEDGAQAI 182
Query: 67 QFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKKIKDSSALREIPVVIMSSENIL 126
+ + N FD LIITDY MP + G L + I+ S +P++++SSE
Sbjct: 183 ELM------RHNMFD-----LIITDYNMPSVDGLALTQFIRSESQQSHVPILMVSSEAND 231
Query: 127 ARIDRCLEDGAEDFIVKPVKLSDVKRI 153
A + + G KP + VK++
Sbjct: 232 AHLSNVSQAGVNALCDKPFEPKLVKQL 258
>TAIR|locus:2040194 [details] [associations]
symbol:RR12 "response regulator 12" species:3702
"Arabidopsis thaliana" [GO:0000156 "phosphorelay response regulator
activity" evidence=IEA;ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM;IDA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0003700 "sequence-specific DNA
binding transcription factor activity" evidence=ISS] [GO:0009736
"cytokinin mediated signaling pathway" evidence=IGI;TAS]
[GO:0009735 "response to cytokinin stimulus" evidence=IGI]
[GO:0010380 "regulation of chlorophyll biosynthetic process"
evidence=IGI] [GO:0031537 "regulation of anthocyanin metabolic
process" evidence=IGI] [GO:0048367 "shoot system development"
evidence=IGI] [GO:0080022 "primary root development" evidence=IGI]
InterPro:IPR001005 InterPro:IPR001789 InterPro:IPR009057
Pfam:PF00072 Pfam:PF00249 PROSITE:PS50110 SMART:SM00448
GO:GO:0005634 EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0003677
GO:GO:0003700 GO:GO:0006351 GO:GO:0003682 GO:GO:0010380
Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0009736 GO:GO:0080022
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172 GO:GO:0048367
InterPro:IPR017930 InterPro:IPR006447 TIGRFAMs:TIGR01557
PROSITE:PS51294 KO:K14491 eggNOG:COG2204 HOGENOM:HOG000238840
GO:GO:0031537 InterPro:IPR017053 PIRSF:PIRSF036392 EMBL:BE522295
IPI:IPI00541861 IPI:IPI01019479 RefSeq:NP_180090.6 UniGene:At.19775
ProteinModelPortal:P62598 SMR:P62598 IntAct:P62598 STRING:P62598
GeneID:817056 KEGG:ath:AT2G25180 GeneFarm:3926 TAIR:At2g25180
InParanoid:P62598 OMA:QQAIMAN ArrayExpress:P62598
Genevestigator:P62598 GermOnline:AT2G25180 Uniprot:P62598
Length = 596
Score = 158 (60.7 bits), Expect = 1.5e-10, P = 1.5e-10
Identities = 45/147 (30%), Positives = 81/147 (55%)
Query: 30 VHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLII 89
+ VLAVDD K++E LL VT + ++AL+ L ++ N FD L+I
Sbjct: 17 MRVLAVDDDQTCLKILESLLRHCQYHVTTTNQAQKALELL----RENKNKFD-----LVI 67
Query: 90 TDYCMPGMTGYELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVKLSD 149
+D MP M G++LL+ + ++PV+++S+ + + + + GA D+++KPV++ +
Sbjct: 68 SDVDMPDMDGFKLLELV---GLEMDLPVIMLSAHSDPKYVMKGVTHGACDYLLKPVRIEE 124
Query: 150 VKRIKDYLTR---DVNLGNEGRGINKR 173
+K I ++ R D N G+ G +KR
Sbjct: 125 LKNIWQHVVRSRFDKNRGSNNNG-DKR 150
>TIGR_CMR|CJE_1664 [details] [associations]
symbol:CJE_1664 "DNA-binding response regulator"
species:195099 "Campylobacter jejuni RM1221" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0003677 "DNA binding" evidence=ISS] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=ISS] InterPro:IPR001789
InterPro:IPR001867 Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110
SMART:SM00448 SMART:SM00862 GO:GO:0006355 GO:GO:0035556
GO:GO:0003677 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005622
EMBL:CP000025 GenomeReviews:CP000025_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG0745
HOGENOM:HOG000034819 RefSeq:YP_179645.1 ProteinModelPortal:Q5HSU0
STRING:Q5HSU0 GeneID:3232292 KEGG:cjr:CJE1664 PATRIC:20045123
OMA:KRNICEL ProtClustDB:CLSK879286
BioCyc:CJEJ195099:GJC0-1694-MONOMER Uniprot:Q5HSU0
Length = 226
Score = 148 (57.2 bits), Expect = 1.5e-10, P = 1.5e-10
Identities = 35/132 (26%), Positives = 73/132 (55%)
Query: 26 DTEEVHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKV 85
+ +E+ +L V+D R+ + +L+ KV +G ++ + F K
Sbjct: 4 ECKELIILVVEDEVKARESMINILSERFSKVIGAQNG-----------DEGLKKFKKFKP 52
Query: 86 DLIITDYCMPGMTGYELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPV 145
DL+ITD MP M G ++ ++IK+ S ++P+V++S+ + R+ R ++ G + +++KPV
Sbjct: 53 DLVITDIAMPIMDGLDMAREIKEISD--DVPIVVLSAYSEKERLLRSIDIGIDKYLIKPV 110
Query: 146 KLSDVKRIKDYL 157
+ ++ ++ DYL
Sbjct: 111 DIEELFKVLDYL 122
>TAIR|locus:2054895 [details] [associations]
symbol:AT2G07440 species:3702 "Arabidopsis thaliana"
[GO:0005634 "nucleus" evidence=ISM] [GO:0007623 "circadian rhythm"
evidence=RCA] [GO:0009736 "cytokinin mediated signaling pathway"
evidence=RCA] EMBL:CP002685 GenomeReviews:CT485783_GR EMBL:AC006217
IPI:IPI00531473 PIR:H84485 RefSeq:NP_178754.1 UniGene:At.63414
ProteinModelPortal:Q9ZQJ8 SMR:Q9ZQJ8 EnsemblPlants:AT2G07440.1
GeneID:815313 KEGG:ath:AT2G07440 TAIR:At2g07440 InParanoid:Q9ZQJ8
PhylomeDB:Q9ZQJ8 ArrayExpress:Q9ZQJ8 Genevestigator:Q9ZQJ8
Uniprot:Q9ZQJ8
Length = 136
Score = 148 (57.2 bits), Expect = 1.5e-10, P = 1.5e-10
Identities = 30/59 (50%), Positives = 43/59 (72%)
Query: 102 LLKKIK-DSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVKLSDVKRIKDYLTR 159
+ + +K +S+A R I VVIMSSEN+ RI RCLE GAE+F +KPVKL D ++K ++ +
Sbjct: 2 MARDVKWESAAFRSIHVVIMSSENVPTRISRCLEKGAEEFFLKPVKLVDHTKLKPHMMK 60
>TAIR|locus:2008585 [details] [associations]
symbol:ARR11 "response regulator 11" species:3702
"Arabidopsis thaliana" [GO:0000156 "phosphorelay response regulator
activity" evidence=IEA;ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0003700 "sequence-specific DNA
binding transcription factor activity" evidence=ISS;IDA]
[GO:0009736 "cytokinin mediated signaling pathway"
evidence=RCA;TAS] [GO:0009735 "response to cytokinin stimulus"
evidence=IGI] [GO:0005515 "protein binding" evidence=IPI]
InterPro:IPR001005 InterPro:IPR001789 InterPro:IPR009057
Pfam:PF00072 Pfam:PF00249 PROSITE:PS50110 SMART:SM00448
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005634 GO:GO:0003677
GO:GO:0003700 GO:GO:0006351 GO:GO:0003682 Gene3D:1.10.10.60
SUPFAM:SSF46689 GO:GO:0009736 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 InterPro:IPR006447 TIGRFAMs:TIGR01557
PROSITE:PS51294 KO:K14491 eggNOG:COG0745 InterPro:IPR017053
PIRSF:PIRSF036392 EMBL:AJ005194 EMBL:AC008113 EMBL:BT008768
EMBL:AB041532 IPI:IPI00521272 PIR:C96700 PIR:T52034 PIR:T52074
RefSeq:NP_176938.1 UniGene:At.121 ProteinModelPortal:Q9FXD6
SMR:Q9FXD6 IntAct:Q9FXD6 STRING:Q9FXD6 EnsemblPlants:AT1G67710.1
GeneID:843096 KEGG:ath:AT1G67710 GeneFarm:3922 TAIR:At1g67710
HOGENOM:HOG000116485 InParanoid:Q9FXD6 OMA:WITRYDE PhylomeDB:Q9FXD6
ProtClustDB:CLSN2914476 Genevestigator:Q9FXD6 GermOnline:AT1G67710
Uniprot:Q9FXD6
Length = 521
Score = 153 (58.9 bits), Expect = 4.2e-10, P = 4.2e-10
Identities = 40/130 (30%), Positives = 75/130 (57%)
Query: 30 VHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLII 89
+ VL VDD K++E++L S +VT R AL+ L E+ DG D++I
Sbjct: 11 LRVLVVDDDPTWLKILEKMLKKCSYEVTTCGLAREALRLL---RERK----DGY--DIVI 61
Query: 90 TDYCMPGMTGYELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVKLSD 149
+D MP M G++LL+ + ++PV++MS + +R+ + ++ GA D+++KP+++ +
Sbjct: 62 SDVNMPDMDGFKLLEHV---GLELDLPVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKE 118
Query: 150 VKRIKDYLTR 159
+K I ++ R
Sbjct: 119 LKIIWQHVLR 128
>DICTYBASE|DDB_G0282927 [details] [associations]
symbol:dhkL "histidine kinase L" species:44689
"Dictyostelium discoideum" [GO:0035556 "intracellular signal
transduction" evidence=IEA] [GO:0023014 "signal transduction by
phosphorylation" evidence=IEA] [GO:0016772 "transferase activity,
transferring phosphorus-containing groups" evidence=IEA]
[GO:0016310 "phosphorylation" evidence=IEA] [GO:0016020 "membrane"
evidence=IEA] [GO:0007165 "signal transduction" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0004871
"signal transducer activity" evidence=IEA] [GO:0000160
"phosphorelay signal transduction system" evidence=IEA] [GO:0000156
"phosphorelay response regulator activity" evidence=IEA]
[GO:0000155 "phosphorelay sensor kinase activity" evidence=IEA]
[GO:0004673 "protein histidine kinase activity" evidence=IEA]
[GO:0016740 "transferase activity" evidence=IEA] [GO:0016301
"kinase activity" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000014 InterPro:IPR001789
InterPro:IPR003594 InterPro:IPR003661 InterPro:IPR004358
InterPro:IPR009082 Pfam:PF00072 Pfam:PF00512 Pfam:PF02518
PRINTS:PR00344 PROSITE:PS50110 PROSITE:PS50112 PROSITE:PS50113
SMART:SM00091 SMART:SM00387 SMART:SM00388 SMART:SM00448
InterPro:IPR005467 InterPro:IPR001610 dictyBase:DDB_G0282927
GO:GO:0005525 GO:GO:0005524 GenomeReviews:CM000153_GR GO:GO:0016020
GO:GO:0006355 GO:GO:0035556 GO:GO:0003924 GO:GO:0006184
GO:GO:0005622 EMBL:AAFI02000049 GO:GO:0023014 SMART:SM00086
TIGRFAMs:TIGR00229 GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
HSSP:P39928 GO:GO:0000155 Gene3D:1.10.287.130 Gene3D:3.30.565.10
SUPFAM:SSF55874 SUPFAM:SSF47384 PROSITE:PS50109 eggNOG:COG0642
EMBL:AF362373 EMBL:AF258796 RefSeq:XP_639305.1
ProteinModelPortal:Q54RP6 EnsemblProtists:DDB0191389 GeneID:8623876
KEGG:ddi:DDB_G0282927 OMA:FIERNDT Uniprot:Q54RP6
Length = 1709
Score = 158 (60.7 bits), Expect = 6.0e-10, P = 6.0e-10
Identities = 40/129 (31%), Positives = 68/129 (52%)
Query: 32 VLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITD 91
VL VDD+ ++ +++ ++L C+V +V SG AL IN G D I D
Sbjct: 1571 VLVVDDNHINIQILSKMLQTVGCEVDSVLSGADALA--------KINQSSGDSYDAIFLD 1622
Query: 92 YCMPGMTGYELLKKIKDSSALREIP--VVIMSSENILARID-RCLEDGAEDFIVKPVKLS 148
MP M G+++ +KI++ +P +I ++ N+ +C + G +DFI KP+K +
Sbjct: 1623 IQMPDMDGFQVSRKIREREKKFSLPRVAIIATTANVFKEDQLKCFDAGMDDFISKPIKRA 1682
Query: 149 DVKRI-KDY 156
++K I K Y
Sbjct: 1683 EIKEIIKKY 1691
>TIGR_CMR|CPS_1520 [details] [associations]
symbol:CPS_1520 "chemotaxis protein CheY" species:167879
"Colwellia psychrerythraea 34H" [GO:0004871 "signal transducer
activity" evidence=ISS] [GO:0006935 "chemotaxis" evidence=ISS]
InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110 SMART:SM00448
GO:GO:0006355 GO:GO:0035556 GO:GO:0005622 EMBL:CP000083
GenomeReviews:CP000083_GR GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 eggNOG:COG0784 HOGENOM:HOG000034820 OMA:LEANDIY
KO:K03413 RefSeq:YP_268262.1 ProteinModelPortal:Q485K3 SMR:Q485K3
STRING:Q485K3 GeneID:3522501 KEGG:cps:CPS_1520 PATRIC:21466247
BioCyc:CPSY167879:GI48-1601-MONOMER Uniprot:Q485K3
Length = 127
Score = 142 (55.0 bits), Expect = 6.6e-10, P = 6.6e-10
Identities = 39/125 (31%), Positives = 63/125 (50%)
Query: 28 EEVHVLAVDDSFVDRKVIERLLT-ISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVD 86
+ + VL VDD R++++ LL + + D G AL L G D D
Sbjct: 3 KNMKVLVVDDFSTMRRIVKNLLRDLGFTNIQEADDGNTALPML--------QGGD---FD 51
Query: 87 LIITDYCMPGMTGYELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVK 146
++TD+ MPGM G +LLK I+ + L IPV+++++E +I + G +IVKP
Sbjct: 52 FVVTDWNMPGMQGIDLLKAIRADANLSHIPVLLITAEAKKEQIIMAAQAGVNGYIVKPFT 111
Query: 147 LSDVK 151
+ +K
Sbjct: 112 AATLK 116
>TIGR_CMR|GSU_2535 [details] [associations]
symbol:GSU_2535 "response regulator" species:243231
"Geobacter sulfurreducens PCA" [GO:0000156 "phosphorelay response
regulator activity" evidence=ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=ISS] InterPro:IPR001789 Pfam:PF00072
PROSITE:PS50110 SMART:SM00448 GO:GO:0006355 GO:GO:0035556
GO:GO:0005622 EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034820
RefSeq:NP_953581.1 ProteinModelPortal:Q74A55 GeneID:2687797
KEGG:gsu:GSU2535 PATRIC:22027919 OMA:DLGCNVY
BioCyc:GSUL243231:GH27-2511-MONOMER Uniprot:Q74A55
Length = 147
Score = 142 (55.0 bits), Expect = 6.6e-10, P = 6.6e-10
Identities = 39/116 (33%), Positives = 62/116 (53%)
Query: 32 VLAVDDSFVDRKVIER-LLTISSCK-VTAVDSGRRALQFLGLDEEQSINGFDGLKVDLII 89
+L VDD ++IE+ L + + V +D+GRRAL F+ EE G L+ L+I
Sbjct: 9 ILLVDDDRGHARLIEKHLARMGGMQHVIWLDNGRRALDFIF--EEGEFEGVKTLRPCLVI 66
Query: 90 TDYCMPGMTGYELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPV 145
D MP + G +L ++K I VVI+++ + A I+ C E G + F+ KP+
Sbjct: 67 ADLNMPELGGVHVLSRLKGDERTSSIAVVILTTSDNPAEIEACHELGCDAFLRKPM 122
>TIGR_CMR|GSU_1038 [details] [associations]
symbol:GSU_1038 "sensory box histidine kinase/response
regulator" species:243231 "Geobacter sulfurreducens PCA"
[GO:0000155 "phosphorelay sensor kinase activity" evidence=ISS]
[GO:0000156 "phosphorelay response regulator activity"
evidence=ISS] [GO:0000160 "phosphorelay signal transduction system"
evidence=ISS] InterPro:IPR000014 InterPro:IPR001789
InterPro:IPR003594 InterPro:IPR003661 InterPro:IPR004358
InterPro:IPR009082 Pfam:PF00072 Pfam:PF00512 Pfam:PF02518
PRINTS:PR00344 PROSITE:PS50110 SMART:SM00091 SMART:SM00387
SMART:SM00388 SMART:SM00448 InterPro:IPR005467 GO:GO:0005524
GO:GO:0016020 GO:GO:0006355 GO:GO:0035556 GO:GO:0005622
EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0023014 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 GO:GO:0000155
Gene3D:1.10.287.130 Gene3D:3.30.565.10 SUPFAM:SSF55874
SUPFAM:SSF47384 PROSITE:PS50109 InterPro:IPR013656 Pfam:PF08448
RefSeq:NP_952091.1 ProteinModelPortal:Q74EC5 GeneID:2688721
KEGG:gsu:GSU1038 PATRIC:22024844 OMA:ECALENA
BioCyc:GSUL243231:GH27-1025-MONOMER Uniprot:Q74EC5
Length = 513
Score = 151 (58.2 bits), Expect = 6.8e-10, P = 6.8e-10
Identities = 41/128 (32%), Positives = 60/128 (46%)
Query: 32 VLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITD 91
+L VDD V RK++ L T+S +V + G RA++ F L DL++ D
Sbjct: 23 ILLVDDDAVTRKMLRNLFTLSGYRVADAEDGARAVEM-----------FRELSPDLVLLD 71
Query: 92 YCMPGMTGYELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVKLSDVK 151
MP M GY I+ +P++IM++ + I R + GA DFI KPV +
Sbjct: 72 IMMPVMDGYGACAAIRGLPGGEHVPIIIMTALDDANSIGRAFDAGATDFIEKPVNWMLLN 131
Query: 152 RIKDYLTR 159
YL R
Sbjct: 132 HRLPYLLR 139
>UNIPROTKB|Q48GG3 [details] [associations]
symbol:cheY2 "Chemotaxis protein CheY" species:264730
"Pseudomonas syringae pv. phaseolicola 1448A" [GO:0004871 "signal
transducer activity" evidence=ISS] [GO:0006935 "chemotaxis"
evidence=ISS] InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110
SMART:SM00448 GO:GO:0006355 GO:GO:0035556 GO:GO:0005622
GO:GO:0006935 GO:GO:0004871 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 EMBL:CP000058 GenomeReviews:CP000058_GR
eggNOG:COG0784 HOGENOM:HOG000034820 KO:K03413 RefSeq:YP_275520.1
ProteinModelPortal:Q48GG3 SMR:Q48GG3 STRING:Q48GG3 GeneID:3558182
KEGG:psp:PSPPH_3362 PATRIC:19976130 OMA:GHYDFLV
ProtClustDB:CLSK642753 Uniprot:Q48GG3
Length = 124
Score = 140 (54.3 bits), Expect = 1.1e-09, P = 1.1e-09
Identities = 39/132 (29%), Positives = 67/132 (50%)
Query: 32 VLAVDDSFVDRKVIERLLT-ISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIIT 90
+L VDD R++I+ LL + + D G AL L QS FD ++T
Sbjct: 3 ILIVDDFSTMRRIIKNLLRDLGFTNTSEADDGLTALPML-----QS-GAFD-----FLVT 51
Query: 91 DYCMPGMTGYELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVKLSDV 150
D+ MPGMTG +LL++++ L+ +PV+++++E +I + G ++VKP +
Sbjct: 52 DWNMPGMTGIDLLRQVRADERLKSLPVLMVTAEAKREQIIEAAQAGVNGYVVKPFTAQAL 111
Query: 151 KRIKDYLTRDVN 162
K + + VN
Sbjct: 112 KEKIEKIFERVN 123
>TAIR|locus:2163198 [details] [associations]
symbol:TOC1 "TIMING OF CAB EXPRESSION 1" species:3702
"Arabidopsis thaliana" [GO:0000156 "phosphorelay response regulator
activity" evidence=IEA;ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM;IDA;TAS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA;ISS;TAS] [GO:0007623 "circadian rhythm"
evidence=IEP;RCA;TAS] [GO:0005515 "protein binding" evidence=IPI]
[GO:0010031 "circumnutation" evidence=IMP] [GO:0006351
"transcription, DNA-dependent" evidence=TAS] [GO:0044212
"transcription regulatory region DNA binding" evidence=IDA]
[GO:0003677 "DNA binding" evidence=IDA] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=IDA] [GO:0010629 "negative regulation of gene expression"
evidence=IDA] [GO:0009639 "response to red or far red light"
evidence=RCA] [GO:0042752 "regulation of circadian rhythm"
evidence=RCA] [GO:0048574 "long-day photoperiodism, flowering"
evidence=RCA] InterPro:IPR001789 InterPro:IPR010402 Pfam:PF00072
Pfam:PF06203 PROSITE:PS50110 PROSITE:PS51017 SMART:SM00448
GO:GO:0005634 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0035556
GO:GO:0003677 GO:GO:0007623 GO:GO:0003700 GO:GO:0006351
GO:GO:0010629 GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
EMBL:AB041530 EMBL:AF272039 EMBL:AJ251086 EMBL:AB010073
EMBL:AY094393 EMBL:BT005816 IPI:IPI00517214 PIR:T52075 PIR:T52076
RefSeq:NP_200946.1 UniGene:At.21919 ProteinModelPortal:Q9LKL2
SMR:Q9LKL2 IntAct:Q9LKL2 STRING:Q9LKL2 EnsemblPlants:AT5G61380.1
GeneID:836259 KEGG:ath:AT5G61380 GeneFarm:4313 TAIR:At5g61380
eggNOG:NOG242953 HOGENOM:HOG000034017 InParanoid:Q9LKL2 KO:K12127
OMA:IPIIMMS PhylomeDB:Q9LKL2 ProtClustDB:CLSN2686914
Genevestigator:Q9LKL2 GermOnline:AT5G61380 GO:GO:0010031
Uniprot:Q9LKL2
Length = 618
Score = 150 (57.9 bits), Expect = 1.2e-09, P = 1.2e-09
Identities = 40/142 (28%), Positives = 76/142 (53%)
Query: 18 DGFDLSPSDTEEVHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSI 77
DGF D V +L D+ + LL+ S +VTAV S R+ + ++
Sbjct: 11 DGF----IDRSRVRILLCDNDSTSLGEVFTLLSECSYQVTAVKSARQVID--------AL 58
Query: 78 NGFDGLKVDLIITDYCMPGMTGYELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGA 137
N +G +D+I+ + +P G ++L+ I LR IPV++MS ++ + + +CL+ GA
Sbjct: 59 NA-EGPDIDIILAEIDLPMAKGMKMLRYITRDKDLRRIPVIMMSRQDEVPVVVKCLKLGA 117
Query: 138 EDFIVKPVKLSDVKRIKDYLTR 159
D++VKP++ +++ + ++ R
Sbjct: 118 ADYLVKPLRTNELLNLWTHMWR 139
>TIGR_CMR|CJE_1261 [details] [associations]
symbol:CJE_1261 "chemotaxis protein CheY" species:195099
"Campylobacter jejuni RM1221" [GO:0004871 "signal transducer
activity" evidence=ISS] [GO:0006935 "chemotaxis" evidence=ISS]
InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110 SMART:SM00448
GO:GO:0006355 GO:GO:0035556 GO:GO:0005622 EMBL:CP000025
GenomeReviews:CP000025_GR GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 eggNOG:COG0784 HOGENOM:HOG000034820 KO:K03413
OMA:DVLITDW ProtClustDB:CLSK872349 RefSeq:YP_179249.1
ProteinModelPortal:Q5HTY6 STRING:Q5HTY6 GeneID:3231768
KEGG:cjr:CJE1261 PATRIC:20044318
BioCyc:CJEJ195099:GJC0-1287-MONOMER Uniprot:Q5HTY6
Length = 130
Score = 139 (54.0 bits), Expect = 1.4e-09, P = 1.4e-09
Identities = 38/128 (29%), Positives = 68/128 (53%)
Query: 32 VLAVDDSFVDRKVIERLLT-ISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIIT 90
+L VDDS R++I+ LT + V + G A L +E+ V ++IT
Sbjct: 3 LLVVDDSSTMRRIIKNTLTRLGHDDVLEAEHGVEAWDLLTKNED----------VKVLIT 52
Query: 91 DYCMPGMTGYELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVKLSDV 150
D+ MP M G EL+KK++ ++P++++++E A + L+ G ++IVKP +
Sbjct: 53 DWNMPEMNGLELVKKVRAEKKYEDMPIIMVTTEGGKAEVITALKAGVNNYIVKPFTPQVL 112
Query: 151 K-RIKDYL 157
K +++D L
Sbjct: 113 KEKLEDVL 120
>TAIR|locus:2116587 [details] [associations]
symbol:RR10 "response regulator 10" species:3702
"Arabidopsis thaliana" [GO:0000156 "phosphorelay response regulator
activity" evidence=IEA;ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM;IDA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0003700 "sequence-specific DNA
binding transcription factor activity" evidence=ISS;IDA]
[GO:0009736 "cytokinin mediated signaling pathway"
evidence=IGI;RCA;TAS] [GO:0009735 "response to cytokinin stimulus"
evidence=IGI] [GO:0010380 "regulation of chlorophyll biosynthetic
process" evidence=IGI] [GO:0031537 "regulation of anthocyanin
metabolic process" evidence=IGI;RCA] [GO:0048367 "shoot system
development" evidence=IGI] [GO:0080022 "primary root development"
evidence=IGI] [GO:0010029 "regulation of seed germination"
evidence=RCA] [GO:0048831 "regulation of shoot system development"
evidence=RCA] InterPro:IPR001005 InterPro:IPR001789
InterPro:IPR009057 Pfam:PF00072 Pfam:PF00249 PROSITE:PS50110
SMART:SM00448 GO:GO:0005634 EMBL:CP002687 GenomeReviews:CT486007_GR
GO:GO:0003677 GO:GO:0003700 GO:GO:0006351 GO:GO:0003682
GO:GO:0010380 Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0009736
GO:GO:0080022 GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
GO:GO:0048367 InterPro:IPR017930 InterPro:IPR006447
TIGRFAMs:TIGR01557 PROSITE:PS51294 KO:K14491 EMBL:AJ005195
EMBL:AL021636 EMBL:AL161580 EMBL:BT003158 IPI:IPI00544491
PIR:T04653 RefSeq:NP_194920.1 UniGene:At.122 PDB:1IRZ PDBsum:1IRZ
ProteinModelPortal:O49397 SMR:O49397 IntAct:O49397 STRING:O49397
PRIDE:O49397 EnsemblPlants:AT4G31920.1 GeneID:829322
KEGG:ath:AT4G31920 GeneFarm:2450 TAIR:At4g31920 eggNOG:COG2204
HOGENOM:HOG000238840 InParanoid:O49397 OMA:THELHNK PhylomeDB:O49397
ProtClustDB:CLSN2685991 EvolutionaryTrace:O49397
Genevestigator:O49397 GermOnline:AT4G31920 GO:GO:0031537
InterPro:IPR017053 PIRSF:PIRSF036392 Uniprot:O49397
Length = 552
Score = 146 (56.5 bits), Expect = 2.6e-09, P = 2.6e-09
Identities = 44/168 (26%), Positives = 85/168 (50%)
Query: 13 ISDEIDGFDLSPSDTEEVHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLD 72
+ EI+ D P + VLAVDD ++++ LL VT + + AL+ L
Sbjct: 3 MEQEIEVLDQFPVG---MRVLAVDDDQTCLRILQTLLQRCQYHVTTTNQAQTALELL--- 56
Query: 73 EEQSINGFDGLKVDLIITDYCMPGMTGYELLKKIKDSSALREIPVVIMSSENILARIDRC 132
++ N FD L+I+D MP M G++LL+ + ++PV+++S+ + + +
Sbjct: 57 -RENKNKFD-----LVISDVDMPDMDGFKLLELV---GLEMDLPVIMLSAHSDPKYVMKG 107
Query: 133 LEDGAEDFIVKPVKLSDVKRIKDYLTRDVNLGNEGRGINKRKARESCD 180
++ GA D+++KPV++ ++K I ++ R L ++ +CD
Sbjct: 108 VKHGACDYLLKPVRIEELKNIWQHVVRKSKLKKNKSNVSNGSG--NCD 153
>UNIPROTKB|P71403 [details] [associations]
symbol:cheY "Chemotaxis protein CheY homolog" species:85962
"Helicobacter pylori 26695" [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110
SMART:SM00448 GO:GO:0005737 GO:GO:0006355 GO:GO:0035556
GO:GO:0046872 GO:GO:0006935 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 eggNOG:COG0784 EMBL:AE000511
GenomeReviews:AE000511_GR GO:GO:0001539 KO:K03413 EMBL:X81897
EMBL:U97567 EMBL:AF021090 PIR:C64653 RefSeq:NP_207858.1
RefSeq:YP_006934983.1 PDB:3GWG PDB:3H1E PDB:3H1F PDB:3H1G
PDBsum:3GWG PDBsum:3H1E PDBsum:3H1F PDBsum:3H1G
ProteinModelPortal:P71403 DIP:DIP-3256N MINT:MINT-160671
GeneID:13870261 GeneID:899603 KEGG:heo:C694_05515 KEGG:hpy:HP1067
PATRIC:20593473 OMA:DVLITDW ProtClustDB:CLSK872349
EvolutionaryTrace:P71403 Uniprot:P71403
Length = 124
Score = 135 (52.6 bits), Expect = 3.6e-09, P = 3.6e-09
Identities = 34/114 (29%), Positives = 62/114 (54%)
Query: 32 VLAVDDSFVDRKVIERLLT-ISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIIT 90
+L VDDS R++I+ L+ + V + G A + L + + + +IT
Sbjct: 3 LLVVDDSSTMRRIIKNTLSRLGYEDVLEAEHGVEAWEKLDANADTKV----------LIT 52
Query: 91 DYCMPGMTGYELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKP 144
D+ MP M G +L+KK++ S +EIP++++++E A + L+ G ++IVKP
Sbjct: 53 DWNMPEMNGLDLVKKVRSDSRFKEIPIIMITTEGGKAEVITALKAGVNNYIVKP 106
>UNIPROTKB|Q4KG39 [details] [associations]
symbol:cheY "Chemotaxis protein CheY" species:220664
"Pseudomonas protegens Pf-5" [GO:0000156 "phosphorelay response
regulator activity" evidence=ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=ISS] [GO:0006935 "chemotaxis"
evidence=ISS] [GO:0035556 "intracellular signal transduction"
evidence=ISS] InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110
SMART:SM00448 GO:GO:0006355 GO:GO:0005622 GO:GO:0006935
EMBL:CP000076 GenomeReviews:CP000076_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG0784
HOGENOM:HOG000034820 KO:K03413 OMA:FGFVISD RefSeq:YP_258794.1
ProteinModelPortal:Q4KG39 SMR:Q4KG39 STRING:Q4KG39 GeneID:3477601
KEGG:pfl:PFL_1668 PATRIC:19872565 ProtClustDB:CLSK715044
BioCyc:PFLU220664:GIX8-1676-MONOMER Uniprot:Q4KG39
Length = 123
Score = 135 (52.6 bits), Expect = 3.6e-09, P = 3.6e-09
Identities = 34/121 (28%), Positives = 61/121 (50%)
Query: 32 VLAVDDSFVDRKVIERLLT-ISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIIT 90
+L VDD R++I+ LL + D G A+ L +G +D ++T
Sbjct: 3 ILIVDDFSTMRRIIKNLLRDLGFTNTVEADDGTTAIPVLN-------SG----SIDFLVT 51
Query: 91 DYCMPGMTGYELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVKLSDV 150
D+ MPGMTG +LL+ ++ L+ +PV+++++E +I + G ++VKP +
Sbjct: 52 DWNMPGMTGIDLLRHVRADEKLKHLPVLMVTAEAKREQIIEAAQAGVNGYVVKPFTAQAL 111
Query: 151 K 151
K
Sbjct: 112 K 112
>TIGR_CMR|CPS_3950 [details] [associations]
symbol:CPS_3950 "response regulator/GGDEF domain protein"
species:167879 "Colwellia psychrerythraea 34H" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
InterPro:IPR001054 InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110
SMART:SM00448 Pfam:PF00990 Pfam:PF00563 GO:GO:0006355 GO:GO:0005622
EMBL:CP000083 GenomeReviews:CP000083_GR SUPFAM:SSF55073
GO:GO:0016849 GO:GO:0009190 InterPro:IPR000160 SMART:SM00267
TIGRFAMs:TIGR00254 PROSITE:PS50887 Gene3D:3.20.20.450
InterPro:IPR001633 SMART:SM00052 SUPFAM:SSF141868 PROSITE:PS50883
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG0784
HOGENOM:HOG000136246 RefSeq:YP_270608.1 ProteinModelPortal:Q47X62
STRING:Q47X62 GeneID:3523052 KEGG:cps:CPS_3950 PATRIC:21470787
OMA:NITEVES ProtClustDB:CLSK768238
BioCyc:CPSY167879:GI48-3963-MONOMER Uniprot:Q47X62
Length = 566
Score = 144 (55.7 bits), Expect = 4.5e-09, P = 4.5e-09
Identities = 45/120 (37%), Positives = 66/120 (55%)
Query: 28 EEVHVLAVDDSFVDRKVIERLLTIS--SCKVTAVDSGRRALQFLGLDEEQSINGFDGLKV 85
+ + VL VDD VDR++I+R L S SC +T V+S AL+ L ++ S
Sbjct: 2 QHMKVLIVDDDIVDRELIKRTLKRSDISCNITEVESVDDALKNL---QDSSF-------- 50
Query: 86 DLIITDYCMPGMTGYELLKKIKDSSALREIPVVIMSS--ENILARIDRCLEDGAEDFIVK 143
D I+ DY +P G ELL +IK + V++MS+ E+ LA C+ GA+DF+VK
Sbjct: 51 DAILLDYNLPQRNGIELLLEIKGDPNRHDTAVIMMSTSKEDELAL--NCINAGAQDFLVK 108
>TIGR_CMR|GSU_2219 [details] [associations]
symbol:GSU_2219 "response regulator" species:243231
"Geobacter sulfurreducens PCA" [GO:0000156 "phosphorelay response
regulator activity" evidence=ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=ISS] InterPro:IPR001789 Pfam:PF00072
PROSITE:PS50110 SMART:SM00448 GO:GO:0006355 GO:GO:0035556
GO:GO:0005622 EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034820 HSSP:P08402
RefSeq:NP_953268.1 ProteinModelPortal:Q74AY0 GeneID:2685652
KEGG:gsu:GSU2219 PATRIC:22027293 OMA:VMLTAKK ProtClustDB:CLSK828762
BioCyc:GSUL243231:GH27-2166-MONOMER Uniprot:Q74AY0
Length = 123
Score = 132 (51.5 bits), Expect = 7.6e-09, P = 7.6e-09
Identities = 38/126 (30%), Positives = 61/126 (48%)
Query: 28 EEVHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDL 87
E+ +L V+D K+ LL+ V V G+ AL ++ DL
Sbjct: 2 EKKRILIVEDEESLLKLESILLSSRGYAVAGVTDGKSALDYIAATPP-----------DL 50
Query: 88 IITDYCMPGMTGYELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVKL 147
II D +PGM G+E+ + IK + R IPVV+++++ D+ LE GA ++ KP K
Sbjct: 51 IILDIMLPGMDGFEVCQMIKADPSTRHIPVVMLTAKKSTQDRDKGLEAGASAYVTKPFKS 110
Query: 148 SDVKRI 153
+ + I
Sbjct: 111 ARIIEI 116
>TIGR_CMR|SO_3209 [details] [associations]
symbol:SO_3209 "chemotaxis protein CheY" species:211586
"Shewanella oneidensis MR-1" [GO:0004871 "signal transducer
activity" evidence=ISS] [GO:0006935 "chemotaxis" evidence=ISS]
InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110 SMART:SM00448
GO:GO:0006355 GO:GO:0035556 GO:GO:0005622 EMBL:AE014299
GenomeReviews:AE014299_GR GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 HOGENOM:HOG000034820 KO:K03413 OMA:GHYDFLV
HSSP:P06143 RefSeq:NP_718764.1 ProteinModelPortal:Q8ECD4 SMR:Q8ECD4
GeneID:1170902 KEGG:son:SO_3209 PATRIC:23526102
ProtClustDB:CLSK907053 Uniprot:Q8ECD4
Length = 127
Score = 132 (51.5 bits), Expect = 7.6e-09, P = 7.6e-09
Identities = 36/129 (27%), Positives = 63/129 (48%)
Query: 28 EEVHVLAVDDSFVDRKVIERLLT-ISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVD 86
+ + +L VDD R++I+ LL + D G AL L + D
Sbjct: 3 KNMKILIVDDFSTMRRIIKNLLRDLGFNNTQEADDGSTALPMLQKGD-----------FD 51
Query: 87 LIITDYCMPGMTGYELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVK 146
++TD+ MPGM G +LLK I+ +L+ +PV+++++E +I + G ++VKP
Sbjct: 52 FVVTDWNMPGMQGIDLLKAIRADDSLKHLPVLMVTAEAKREQIIAAAQAGVNGYVVKPFT 111
Query: 147 LSDVKRIKD 155
+ +K D
Sbjct: 112 AATLKEKLD 120
>TIGR_CMR|GSU_1316 [details] [associations]
symbol:GSU_1316 "response regulator" species:243231
"Geobacter sulfurreducens PCA" [GO:0000156 "phosphorelay response
regulator activity" evidence=ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=ISS] InterPro:IPR003018
InterPro:IPR001789 Pfam:PF00072 Pfam:PF13185 PROSITE:PS50110
SMART:SM00065 SMART:SM00448 GO:GO:0006355 GO:GO:0035556
GO:GO:0005622 EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 RefSeq:NP_952369.1
ProteinModelPortal:Q74DK0 DNASU:2685737 GeneID:2685737
KEGG:gsu:GSU1316 PATRIC:22025407 HOGENOM:HOG000276092 OMA:NMVLTDI
ProtClustDB:CLSK828294 BioCyc:GSUL243231:GH27-1295-MONOMER
Uniprot:Q74DK0
Length = 324
Score = 142 (55.0 bits), Expect = 7.8e-09, P = 7.8e-09
Identities = 41/117 (35%), Positives = 62/117 (52%)
Query: 29 EVHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLI 88
E+ VL VD+S R I L VT+V SG E++++ + D++
Sbjct: 6 EIQVLVVDESAPSRAFIASTLENGGYIVTSVASG-----------EEAVHEVNAAPFDIL 54
Query: 89 ITDYCMPGMTGYELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPV 145
+TD +PGM+G LLK +KDS E+ V++ S+ + I + L GA DFI+KPV
Sbjct: 55 VTDINLPGMSGLNLLKLLKDSFPDLEV-VIVTSNASSFTAI-KALRLGAYDFIIKPV 109
>TIGR_CMR|SPO_3037 [details] [associations]
symbol:SPO_3037 "DNA-binding response regulator, LysR
family" species:246200 "Ruegeria pomeroyi DSS-3" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] InterPro:IPR000847 InterPro:IPR001789
Pfam:PF00072 Pfam:PF00126 PRINTS:PR00039 PROSITE:PS50110
PROSITE:PS50931 SMART:SM00448 GO:GO:0035556 EMBL:CP000031
GenomeReviews:CP000031_GR GO:GO:0003677 GO:GO:0003700
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0006351 GO:GO:0005622
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172 RefSeq:YP_168241.1
ProteinModelPortal:Q5LP15 DNASU:3195987 GeneID:3195987
KEGG:sil:SPO3037 PATRIC:23379513 Uniprot:Q5LP15
Length = 269
Score = 141 (54.7 bits), Expect = 7.8e-09, P = 7.8e-09
Identities = 44/136 (32%), Positives = 74/136 (54%)
Query: 24 PSDTEEV-HVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDG 82
P D EE+ +L VDD+ + + LL + ++ SG+ AL FL G
Sbjct: 106 PGDDEELPSLLVVDDTPQNIHHLHGLLK-DAYRIIPQTSGKGALSFLS-----------G 153
Query: 83 LKVDLIITDYCMPGMTGYELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIV 142
DLI+ D MP M GYE+ ++IK +++L +IPV+ ++S + + LE GA DFI
Sbjct: 154 ELADLILLDIRMPDMDGYEVCRQIKSTASLADIPVIFLTSLDDPMDETKGLEMGACDFIT 213
Query: 143 KPVKLSDVK-RIKDYL 157
+P+ + ++ RI+ ++
Sbjct: 214 RPIVPAILRARIRSHI 229
>TIGR_CMR|APH_0551 [details] [associations]
symbol:APH_0551 "response regulator/GGDEF domain protein"
species:212042 "Anaplasma phagocytophilum HZ" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
InterPro:IPR001054 InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110
SMART:SM00448 Pfam:PF00990 GO:GO:0006355 GO:GO:0005622
EMBL:CP000235 GenomeReviews:CP000235_GR SUPFAM:SSF55073
GO:GO:0016849 GO:GO:0009190 InterPro:IPR000160 SMART:SM00267
TIGRFAMs:TIGR00254 PROSITE:PS50887 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 eggNOG:COG3706 KO:K02488 HOGENOM:HOG000167204
ProtClustDB:PRK09581 RefSeq:YP_505143.1 ProteinModelPortal:Q2GKF8
STRING:Q2GKF8 GeneID:3930248 KEGG:aph:APH_0551 PATRIC:20949762
OMA:VERENDF BioCyc:APHA212042:GHPM-575-MONOMER Uniprot:Q2GKF8
Length = 456
Score = 143 (55.4 bits), Expect = 8.1e-09, P = 8.1e-09
Identities = 43/130 (33%), Positives = 69/130 (53%)
Query: 32 VLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITD 91
+L VDD + K+++ LT V SG A++ +E Q DLI+ D
Sbjct: 5 ILIVDDLPSNIKLLQAKLTAEYYTVITATSGPEAIRMA--EEHQP---------DLILLD 53
Query: 92 YCMPGMTGYELLKKIKDSSALREIPVVIMSS-ENILARIDRCLEDGAEDFIVKPVK-LSD 149
MPGM GYE K ++ + A+ IP+V++++ +N + L GA+DF++KP+ ++
Sbjct: 54 VMMPGMDGYETCKNMRTNPAIAYIPIVMVTALDNTTSNRVNGLSAGADDFLIKPIDDVAL 113
Query: 150 VKRIKDYLTR 159
RIK LTR
Sbjct: 114 FSRIKS-LTR 122
>UNIPROTKB|Q9KQD5 [details] [associations]
symbol:VC_2065 "Chemotaxis protein CheY" species:243277
"Vibrio cholerae O1 biovar El Tor str. N16961" [GO:0004871 "signal
transducer activity" evidence=ISS] [GO:0006935 "chemotaxis"
evidence=ISS] InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110
SMART:SM00448 GO:GO:0006355 GO:GO:0035556 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0005622 GO:GO:0006935 GO:GO:0004871
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172 KO:K03413
OMA:GHYDFLV HSSP:P06143 PIR:C82123 RefSeq:NP_231697.1
ProteinModelPortal:Q9KQD5 SMR:Q9KQD5 DNASU:2613445 GeneID:2613445
KEGG:vch:VC2065 PATRIC:20083164 ProtClustDB:CLSK874661
Uniprot:Q9KQD5
Length = 130
Score = 131 (51.2 bits), Expect = 9.7e-09, P = 9.7e-09
Identities = 36/129 (27%), Positives = 62/129 (48%)
Query: 28 EEVHVLAVDDSFVDRKVIERLLT-ISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVD 86
+ + +L VDD R++++ LL + D G AL L + D
Sbjct: 7 KNMKILIVDDFSTMRRIVKNLLRDLGFNNTQEADDGLTALPMLKKGD-----------FD 55
Query: 87 LIITDYCMPGMTGYELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVK 146
++TD+ MPGM G +LLK I+ L+ +PV+++++E +I + G +IVKP
Sbjct: 56 FVVTDWNMPGMQGIDLLKNIRADEELKHLPVLMITAEAKREQIIEAAQAGVNGYIVKPFT 115
Query: 147 LSDVKRIKD 155
+ +K D
Sbjct: 116 AATLKEKLD 124
>TIGR_CMR|VC_2065 [details] [associations]
symbol:VC_2065 "chemotaxis protein CheY" species:686
"Vibrio cholerae O1 biovar El Tor" [GO:0004871 "signal transducer
activity" evidence=ISS] [GO:0006935 "chemotaxis" evidence=ISS]
InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110 SMART:SM00448
GO:GO:0006355 GO:GO:0035556 EMBL:AE003852 GenomeReviews:AE003852_GR
GO:GO:0005622 GO:GO:0006935 GO:GO:0004871 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 KO:K03413 OMA:GHYDFLV
HSSP:P06143 PIR:C82123 RefSeq:NP_231697.1 ProteinModelPortal:Q9KQD5
SMR:Q9KQD5 DNASU:2613445 GeneID:2613445 KEGG:vch:VC2065
PATRIC:20083164 ProtClustDB:CLSK874661 Uniprot:Q9KQD5
Length = 130
Score = 131 (51.2 bits), Expect = 9.7e-09, P = 9.7e-09
Identities = 36/129 (27%), Positives = 62/129 (48%)
Query: 28 EEVHVLAVDDSFVDRKVIERLLT-ISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVD 86
+ + +L VDD R++++ LL + D G AL L + D
Sbjct: 7 KNMKILIVDDFSTMRRIVKNLLRDLGFNNTQEADDGLTALPMLKKGD-----------FD 55
Query: 87 LIITDYCMPGMTGYELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVK 146
++TD+ MPGM G +LLK I+ L+ +PV+++++E +I + G +IVKP
Sbjct: 56 FVVTDWNMPGMQGIDLLKNIRADEELKHLPVLMITAEAKREQIIEAAQAGVNGYIVKPFT 115
Query: 147 LSDVKRIKD 155
+ +K D
Sbjct: 116 AATLKEKLD 124
>TIGR_CMR|GSU_2287 [details] [associations]
symbol:GSU_2287 "response regulator" species:243231
"Geobacter sulfurreducens PCA" [GO:0000156 "phosphorelay response
regulator activity" evidence=ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=ISS] InterPro:IPR001789 Pfam:PF00072
PROSITE:PS50110 SMART:SM00448 GO:GO:0006355 GO:GO:0035556
GO:GO:0005622 EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034820
RefSeq:NP_953336.1 ProteinModelPortal:Q74AR5 GeneID:2686930
KEGG:gsu:GSU2287 PATRIC:22027433 OMA:HERDMEA
BioCyc:GSUL243231:GH27-2270-MONOMER Uniprot:Q74AR5
Length = 136
Score = 130 (50.8 bits), Expect = 1.2e-08, P = 1.2e-08
Identities = 37/137 (27%), Positives = 75/137 (54%)
Query: 27 TEEVHVLAVDDS----FVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDG 82
TEE+ +L V+D+ F+ R+V+++ +S ++ V G AL++L + E + F
Sbjct: 4 TEEITMLLVEDNPDEEFLTRRVLKKFPALS--RIDVVKDGVEALRYLTVAENRVPPRF-- 59
Query: 83 LKVDLIITDYCMPGMTGYELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIV 142
++ D +P + G ++L++++ R+IPVV+++S + ++ C + GA F+
Sbjct: 60 -----VLLDLKLPRVDGVDVLREMRKREETRDIPVVVLTSSDHERDMEACGKLGAAHFLQ 114
Query: 143 KPVKLSDVKRIKDYLTR 159
KP+ D R+ + L R
Sbjct: 115 KPL---DAGRMSEVLNR 128
>TIGR_CMR|GSU_2314 [details] [associations]
symbol:GSU_2314 "sensory box histidine kinase/response
regulator" species:243231 "Geobacter sulfurreducens PCA"
[GO:0000155 "phosphorelay sensor kinase activity" evidence=ISS]
[GO:0000156 "phosphorelay response regulator activity"
evidence=ISS] [GO:0000160 "phosphorelay signal transduction system"
evidence=ISS] InterPro:IPR000014 InterPro:IPR000700
InterPro:IPR001789 InterPro:IPR003594 InterPro:IPR003661
InterPro:IPR004358 InterPro:IPR008207 InterPro:IPR009082
Pfam:PF00072 Pfam:PF00512 Pfam:PF01627 Pfam:PF02518 Pfam:PF13188
PRINTS:PR00344 PROSITE:PS50110 PROSITE:PS50112 PROSITE:PS50113
PROSITE:PS50894 SMART:SM00073 SMART:SM00091 SMART:SM00387
SMART:SM00388 SMART:SM00448 InterPro:IPR005467 InterPro:IPR001610
GO:GO:0005524 GO:GO:0016020 GO:GO:0006355 GO:GO:0035556
GO:GO:0005622 EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0023014
SMART:SM00086 TIGRFAMs:TIGR00229 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 GO:GO:0000155 Gene3D:1.10.287.130
Gene3D:3.30.565.10 SUPFAM:SSF55874 SUPFAM:SSF47384 PROSITE:PS50109
Gene3D:1.20.120.160 SUPFAM:SSF47226 InterPro:IPR021796 Pfam:PF11845
HSSP:P06143 RefSeq:NP_953363.2 GeneID:2687347 KEGG:gsu:GSU2314
PATRIC:22027483 HOGENOM:HOG000144277 ProtClustDB:CLSK2306793
BioCyc:GSUL243231:GH27-2320-MONOMER Uniprot:Q74AN8
Length = 1025
Score = 143 (55.4 bits), Expect = 2.6e-08, P = 2.6e-08
Identities = 50/178 (28%), Positives = 83/178 (46%)
Query: 2 TTTNGVASLRLISDEIDGFD-----LSPSDTEEVHVLAVDDSFVDRKVIERLLTISSCKV 56
T + G +LR S E DG D LS ++V +L V+D+ +R+V ++ +
Sbjct: 735 TASFGTQNLRDSSPEPDGGDGPLQLLSDLGHDDVRILLVEDNATNRQVALGIIKRLGLRG 794
Query: 57 TAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKKIKD--SSALR- 113
A +G AL L DL++ D MP M G+E + I+D S L
Sbjct: 795 DAAANGAEALDLLATTP-----------YDLVLMDVQMPVMDGFEATRHIRDVRSPVLNH 843
Query: 114 EIPVVIMSSENILARIDRCLEDGAEDFIVKPVKLSDV--KRIKDYLTRDVNLGNEGRG 169
EIPV+ +++ + +CL+ G D++ KP+ D + + +L R + N+G G
Sbjct: 844 EIPVIALTAHAMKGDRRKCLDAGMNDYLAKPI-FPDALAEMLVKWLPRRCRISNDGDG 900
>TAIR|locus:2093668 [details] [associations]
symbol:RR1 "response regulator 1" species:3702
"Arabidopsis thaliana" [GO:0000156 "phosphorelay response regulator
activity" evidence=IEA;ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM;IDA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0003700 "sequence-specific DNA
binding transcription factor activity" evidence=ISS;IDA]
[GO:0009736 "cytokinin mediated signaling pathway"
evidence=IGI;RCA;TAS] [GO:0009735 "response to cytokinin stimulus"
evidence=IGI;IMP] [GO:0005515 "protein binding" evidence=IPI]
[GO:0010380 "regulation of chlorophyll biosynthetic process"
evidence=IGI] [GO:0031537 "regulation of anthocyanin metabolic
process" evidence=IGI;RCA] [GO:0048367 "shoot system development"
evidence=IGI] [GO:0080022 "primary root development" evidence=IGI]
[GO:0006487 "protein N-linked glycosylation" evidence=RCA]
[GO:0006635 "fatty acid beta-oxidation" evidence=RCA] [GO:0010029
"regulation of seed germination" evidence=RCA] [GO:0010043
"response to zinc ion" evidence=RCA] [GO:0016558 "protein import
into peroxisome matrix" evidence=RCA] [GO:0048831 "regulation of
shoot system development" evidence=RCA] InterPro:IPR001005
InterPro:IPR001789 InterPro:IPR009057 Pfam:PF00072 Pfam:PF00249
PROSITE:PS50110 SMART:SM00448 GO:GO:0005634 EMBL:CP002686
GenomeReviews:BA000014_GR GO:GO:0003677 GO:GO:0003700 GO:GO:0006351
GO:GO:0003682 GO:GO:0010380 Gene3D:1.10.10.60 SUPFAM:SSF46689
GO:GO:0009736 GO:GO:0080022 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 GO:GO:0048367 InterPro:IPR017930 InterPro:IPR006447
TIGRFAMs:TIGR01557 PROSITE:PS51294 KO:K14491 eggNOG:COG0745
GO:GO:0031537 InterPro:IPR017053 PIRSF:PIRSF036392 EMBL:AB016471
EMBL:AP001308 EMBL:AB028608 EMBL:AY056099 EMBL:AK316883
IPI:IPI00534841 IPI:IPI00547650 PIR:T51246 RefSeq:NP_566561.2
RefSeq:NP_850600.2 UniGene:At.183 UniGene:At.48672
ProteinModelPortal:Q940D0 SMR:Q940D0 IntAct:Q940D0 STRING:Q940D0
PaxDb:Q940D0 PRIDE:Q940D0 EnsemblPlants:AT3G16857.2 GeneID:820940
KEGG:ath:AT3G16857 GeneFarm:3920 TAIR:At3g16857
HOGENOM:HOG000034078 InParanoid:Q940D0 OMA:RTCLYEV PhylomeDB:Q940D0
ProtClustDB:CLSN2680844 Genevestigator:Q940D0 GermOnline:AT3G16857
Uniprot:Q940D0
Length = 690
Score = 142 (55.0 bits), Expect = 3.0e-08, P = 3.0e-08
Identities = 37/130 (28%), Positives = 72/130 (55%)
Query: 30 VHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLII 89
+ VL VDD ++ER+L +VT + AL L ++ +GFD ++I
Sbjct: 37 LRVLVVDDDPTCLMILERMLRTCLYEVTKCNRAEMALSLL----RKNKHGFD-----IVI 87
Query: 90 TDYCMPGMTGYELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVKLSD 149
+D MP M G++LL+ + ++PV++MS+++ + + + + GA D+++KPV++
Sbjct: 88 SDVHMPDMDGFKLLEHV---GLEMDLPVIMMSADDSKSVVLKGVTHGAVDYLIKPVRMEA 144
Query: 150 VKRIKDYLTR 159
+K I ++ R
Sbjct: 145 LKNIWQHVVR 154
>TIGR_CMR|GSU_0403 [details] [associations]
symbol:GSU_0403 "chemotaxis protein CheY" species:243231
"Geobacter sulfurreducens PCA" [GO:0004871 "signal transducer
activity" evidence=ISS] [GO:0006935 "chemotaxis" evidence=ISS]
InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110 SMART:SM00448
GO:GO:0006355 GO:GO:0035556 GO:GO:0005622 EMBL:AE017180
GenomeReviews:AE017180_GR GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 HOGENOM:HOG000034820 KO:K03413 HSSP:P06143
RefSeq:NP_951462.1 ProteinModelPortal:Q74G46 GeneID:2685717
KEGG:gsu:GSU0403 PATRIC:22023550 OMA:MEGKSID ProtClustDB:CLSK827806
BioCyc:GSUL243231:GH27-435-MONOMER Uniprot:Q74G46
Length = 120
Score = 123 (48.4 bits), Expect = 6.8e-08, P = 6.8e-08
Identities = 36/114 (31%), Positives = 56/114 (49%)
Query: 31 HVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIIT 90
+VL VDDS RK+I R L + V + F D + +N G VDLI++
Sbjct: 3 NVLIVDDSSTMRKIISRSLRQAGLPVDEI--------FEAGDGIEGLNVLSGKSVDLILS 54
Query: 91 DYCMPGMTGYELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKP 144
D MP M G E +K+ + + + P+V++++E + + GA D I KP
Sbjct: 55 DINMPNMDGLEFIKQARANG--HKAPIVMITTEGGEDILKEAISSGASDSIKKP 106
>TIGR_CMR|CHY_2047 [details] [associations]
symbol:CHY_2047 "DNA-binding response regulator"
species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0000156 "phosphorelay response regulator activity"
evidence=ISS] [GO:0000160 "phosphorelay signal transduction system"
evidence=ISS] InterPro:IPR001789 InterPro:IPR001867
InterPro:IPR016032 Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110
SMART:SM00448 SMART:SM00862 GO:GO:0006355 GO:GO:0035556
GO:GO:0003677 EMBL:CP000141 GenomeReviews:CP000141_GR
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0006351 GO:GO:0005622
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG0745
HOGENOM:HOG000034819 SUPFAM:SSF46894 RefSeq:YP_360866.1
ProteinModelPortal:Q3AAG8 SMR:Q3AAG8 STRING:Q3AAG8 GeneID:3727851
KEGG:chy:CHY_2047 PATRIC:21277175 KO:K07658 OMA:WGYEFSG
ProtClustDB:CLSK2772343 BioCyc:CHYD246194:GJCN-2046-MONOMER
Uniprot:Q3AAG8
Length = 231
Score = 135 (52.6 bits), Expect = 6.8e-08, P = 6.8e-08
Identities = 48/148 (32%), Positives = 77/148 (52%)
Query: 32 VLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITD 91
+L VDD ++I+ L KV G RAL+ + ++ + DL+I D
Sbjct: 3 ILVVDDEAPIVELIKFNLEREGYKVLEAYDGIRALEIV----KKELP-------DLVILD 51
Query: 92 YCMPGMTGYELLKKIKDSSALREIPVVIMSSENILARIDRCL--EDGAEDFIVKPVKLSD 149
+PGM+G E+ K I+++ EIP++++S+ +D+ L E GA+D++VKP +
Sbjct: 52 IMLPGMSGLEVCKNIRNNEKTAEIPIIMLSARG--EEVDKILGLELGADDYMVKPFSPRE 109
Query: 150 -VKRIKDYLTRDVNLGNEGR--GINKRK 174
V R+K L R G EG+ GI K K
Sbjct: 110 LVARVKARLRRLE--GREGKKEGIIKIK 135
>TIGR_CMR|SO_3457 [details] [associations]
symbol:SO_3457 "sensor histidine kinase/response regulator"
species:211586 "Shewanella oneidensis MR-1" [GO:0000155
"phosphorelay sensor kinase activity" evidence=ISS] [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
InterPro:IPR001789 InterPro:IPR003594 InterPro:IPR003660
InterPro:IPR003661 InterPro:IPR004358 InterPro:IPR008207
InterPro:IPR009082 Pfam:PF00072 Pfam:PF00512 Pfam:PF00672
Pfam:PF01627 Pfam:PF02518 PRINTS:PR00344 PROSITE:PS50110
PROSITE:PS50885 PROSITE:PS50894 SMART:SM00073 SMART:SM00304
SMART:SM00387 SMART:SM00388 SMART:SM00448 InterPro:IPR005467
GO:GO:0016021 GO:GO:0005524 GO:GO:0006355 GO:GO:0035556
GO:GO:0005622 EMBL:AE014299 GenomeReviews:AE014299_GR GO:GO:0023014
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172 HSSP:P39928
GO:GO:0000155 Gene3D:1.10.287.130 Gene3D:3.30.565.10
SUPFAM:SSF55874 SUPFAM:SSF47384 PROSITE:PS50109 Gene3D:1.20.120.160
SUPFAM:SSF47226 HOGENOM:HOG000272329 OMA:ANQVISQ
ProtClustDB:PRK11107 InterPro:IPR019247 Pfam:PF09984
RefSeq:NP_719006.2 ProteinModelPortal:Q8EBQ2 GeneID:1171133
PATRIC:23526610 Uniprot:Q8EBQ2
Length = 935
Score = 141 (54.7 bits), Expect = 7.5e-08, P = 7.5e-08
Identities = 41/137 (29%), Positives = 68/137 (49%)
Query: 24 PSDTEEVHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGL 83
P+ + + VLAVDD+F + K+I+ LL V AV+SG A++ + FD
Sbjct: 676 PAARQSLTVLAVDDNFANLKLIDTLLNELVTTVIAVNSGEEAVK------QAKTRTFD-- 727
Query: 84 KVDLIITDYCMPGMTGYELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVK 143
LI D MPG G K+I+ S R P++ +++ I + L G + ++ K
Sbjct: 728 ---LIFMDIQMPGTDGISATKQIRQGSMNRNTPIIAVTAHAIAEERELILGSGMDGYLPK 784
Query: 144 PVKLSDVK-RIKDYLTR 159
P+ + +K I ++TR
Sbjct: 785 PIDEAALKAEINRWITR 801
>UNIPROTKB|Q9A5I5 [details] [associations]
symbol:pleD "Response regulator PleD" species:190650
"Caulobacter crescentus CB15" [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR001054 InterPro:IPR001789 Pfam:PF00072
PROSITE:PS50110 SMART:SM00448 Pfam:PF00990 GO:GO:0005525
GO:GO:0005737 GO:GO:0030154 GO:GO:0006355 GO:GO:0046872
GO:GO:0007049 SUPFAM:SSF55073 UniPathway:UPA00599 GO:GO:0052621
GO:GO:0016849 GO:GO:0009190 InterPro:IPR000160 SMART:SM00267
TIGRFAMs:TIGR00254 PROSITE:PS50887 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 eggNOG:COG3706 EMBL:AE005673
GenomeReviews:AE005673_GR KO:K02488 EMBL:L42554 PIR:E87554
RefSeq:NP_421265.1 ProteinModelPortal:Q9A5I5 SMR:Q9A5I5
DIP:DIP-29503N IntAct:Q9A5I5 GeneID:943650 KEGG:ccr:CC_2462
PATRIC:21301956 HOGENOM:HOG000167204 OMA:LAICERN
ProtClustDB:PRK09581 Uniprot:Q9A5I5
Length = 454
Score = 139 (54.0 bits), Expect = 7.7e-08, P = 7.7e-08
Identities = 39/116 (33%), Positives = 59/116 (50%)
Query: 32 VLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITD 91
+L VDD + +++E LT +V+ G AL D D+I+ D
Sbjct: 5 ILVVDDIEANVRLLEAKLTAEYYEVSTAMDGPTALAMAARDLP-----------DIILLD 53
Query: 92 YCMPGMTGYELLKKIKDSSALREIPVVIMSSENILARIDRC--LEDGAEDFIVKPV 145
MPGM G+ + +K+KD R IPVV++++ + R DR LE GA DF+ KP+
Sbjct: 54 VMMPGMDGFTVCRKLKDDPTTRHIPVVLITALD--GRGDRIQGLESGASDFLTKPI 107
>TIGR_CMR|GSU_1102 [details] [associations]
symbol:GSU_1102 "DNA-binding response regulator"
species:243231 "Geobacter sulfurreducens PCA" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] InterPro:IPR001789 InterPro:IPR001867
InterPro:IPR016032 Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110
SMART:SM00448 SMART:SM00862 GO:GO:0006355 GO:GO:0035556
GO:GO:0003677 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0006351
GO:GO:0005622 EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034819
SUPFAM:SSF46894 HSSP:P08402 KO:K07657 RefSeq:NP_952155.1
ProteinModelPortal:Q74E62 GeneID:2688572 KEGG:gsu:GSU1102
PATRIC:22024966 OMA:EARRCKP ProtClustDB:CLSK828177
BioCyc:GSUL243231:GH27-1089-MONOMER Uniprot:Q74E62
Length = 225
Score = 134 (52.2 bits), Expect = 8.4e-08, P = 8.4e-08
Identities = 36/105 (34%), Positives = 60/105 (57%)
Query: 76 SINGFDGLKV------DLIITDYCMPGMTGYELLKKIKDSSALREIPVVIMSSENILARI 129
+++G +GL++ DLI+ D +PGM G E+ K +K S IPV+++++ I
Sbjct: 31 ALDGANGLELARSQPPDLILLDLMLPGMMGMEVCKILKKSEKTAHIPVIMLTARG--EEI 88
Query: 130 DRCL--EDGAEDFIVKPVKLSDVK-RIKDYLTRDVNLGNEGRGIN 171
DR + E GA+D++VKP ++ R+K L R + EG+ IN
Sbjct: 89 DRVVGFEVGADDYVVKPFSTRELLLRVKAVLRRSLPDKPEGKVIN 133
>UNIPROTKB|Q74AX6 [details] [associations]
symbol:cheY40H-1 "Response receiver CheY associated with
MCPs of class 40H" species:243231 "Geobacter sulfurreducens PCA"
[GO:0004871 "signal transducer activity" evidence=ISS] [GO:0006935
"chemotaxis" evidence=ISS] InterPro:IPR001789 Pfam:PF00072
PROSITE:PS50110 SMART:SM00448 GO:GO:0006355 GO:GO:0035556
GO:GO:0005622 GO:GO:0006935 GO:GO:0004871 EMBL:AE017180
GenomeReviews:AE017180_GR GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 HOGENOM:HOG000034820 KO:K03413 HSSP:P06143
RefSeq:NP_953272.2 ProteinModelPortal:Q74AX6 GeneID:2685646
KEGG:gsu:GSU2223 PATRIC:22027301 OMA:GANEYLV ProtClustDB:CLSK828765
BioCyc:GSUL243231:GH27-2170-MONOMER Uniprot:Q74AX6
Length = 121
Score = 122 (48.0 bits), Expect = 8.7e-08, P = 8.7e-08
Identities = 31/96 (32%), Positives = 54/96 (56%)
Query: 70 GLDEEQSINGFDGLKV------DLIITDYCMPGMTGYELLKKIKDSSALREIPVVIMSSE 123
G + ++ +GF+ L++ DLIITD MP + G EL+ ++ S R IP+ I+S+E
Sbjct: 26 GFEVVEASSGFEALRLLPRERLDLIITDINMPDINGLELVSFVRTSDNYRHIPLFIISTE 85
Query: 124 NILARIDRCLEDGAEDFIVKPVKLSDVKRIKDYLTR 159
++ L GA +++VKP D R++D + +
Sbjct: 86 GSERDREKGLSLGANEYLVKPF---DPARLQDLIVK 118
>TIGR_CMR|GSU_2223 [details] [associations]
symbol:GSU_2223 "chemotaxis protein CheY" species:243231
"Geobacter sulfurreducens PCA" [GO:0004871 "signal transducer
activity" evidence=ISS] [GO:0006935 "chemotaxis" evidence=ISS]
InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110 SMART:SM00448
GO:GO:0006355 GO:GO:0035556 GO:GO:0005622 GO:GO:0006935
GO:GO:0004871 EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034820 KO:K03413
HSSP:P06143 RefSeq:NP_953272.2 ProteinModelPortal:Q74AX6
GeneID:2685646 KEGG:gsu:GSU2223 PATRIC:22027301 OMA:GANEYLV
ProtClustDB:CLSK828765 BioCyc:GSUL243231:GH27-2170-MONOMER
Uniprot:Q74AX6
Length = 121
Score = 122 (48.0 bits), Expect = 8.7e-08, P = 8.7e-08
Identities = 31/96 (32%), Positives = 54/96 (56%)
Query: 70 GLDEEQSINGFDGLKV------DLIITDYCMPGMTGYELLKKIKDSSALREIPVVIMSSE 123
G + ++ +GF+ L++ DLIITD MP + G EL+ ++ S R IP+ I+S+E
Sbjct: 26 GFEVVEASSGFEALRLLPRERLDLIITDINMPDINGLELVSFVRTSDNYRHIPLFIISTE 85
Query: 124 NILARIDRCLEDGAEDFIVKPVKLSDVKRIKDYLTR 159
++ L GA +++VKP D R++D + +
Sbjct: 86 GSERDREKGLSLGANEYLVKPF---DPARLQDLIVK 118
>UNIPROTKB|Q9KRI8 [details] [associations]
symbol:VC_1653 "Sensory box sensor histidine
kinase/response regulator VieS" species:243277 "Vibrio cholerae O1
biovar El Tor str. N16961" [GO:0000155 "phosphorelay sensor kinase
activity" evidence=ISS] [GO:0000156 "phosphorelay response
regulator activity" evidence=ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=ISS] [GO:0023014 "signal transduction
by phosphorylation" evidence=ISS] [GO:0035556 "intracellular signal
transduction" evidence=ISS] InterPro:IPR000014 InterPro:IPR001638
InterPro:IPR001789 InterPro:IPR003594 InterPro:IPR003661
InterPro:IPR004358 InterPro:IPR008207 InterPro:IPR009082
Pfam:PF00072 Pfam:PF00497 Pfam:PF00512 Pfam:PF01627 Pfam:PF02518
PRINTS:PR00344 PROSITE:PS50110 PROSITE:PS50894 SMART:SM00062
SMART:SM00073 SMART:SM00091 SMART:SM00387 SMART:SM00388
SMART:SM00448 InterPro:IPR005467 GO:GO:0005524 GO:GO:0016020
GO:GO:0006355 EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0005215
GO:GO:0030288 GO:GO:0005622 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 GO:GO:0000155 Gene3D:1.10.287.130
Gene3D:3.30.565.10 SUPFAM:SSF55874 SUPFAM:SSF47384 PROSITE:PS50109
Gene3D:1.20.120.160 SUPFAM:SSF47226 KO:K07679 HSSP:Q56310
PIR:A82174 RefSeq:NP_231290.1 ProteinModelPortal:Q9KRI8
DNASU:2613784 GeneID:2613784 KEGG:vch:VC1653 PATRIC:20082368
OMA:IGCTANA ProtClustDB:CLSK874479 Uniprot:Q9KRI8
Length = 1146
Score = 141 (54.7 bits), Expect = 9.7e-08, P = 9.7e-08
Identities = 39/129 (30%), Positives = 67/129 (51%)
Query: 31 HVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIIT 90
HVL DD ++R +I++ L+ T V G +A + L EQ DL+IT
Sbjct: 919 HVLVADDDAINRLLIKKQLSELGLSATLVSDGLQAFEKLSQHPEQ---------YDLLIT 969
Query: 91 DYCMPGMTGYELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVKLSDV 150
D MP + G+ L +K+K +L + VV ++E+ ++ L+ G + I KP L+++
Sbjct: 970 DCHMPHLDGFALTRKVKQEISLFKGAVVGCTAEDSRLAAEQALQAGMDKVIYKPYTLANL 1029
Query: 151 KRIKD-YLT 158
+++ YLT
Sbjct: 1030 RKVLSRYLT 1038
>TIGR_CMR|VC_1653 [details] [associations]
symbol:VC_1653 "sensory box sensor histidine
kinase/response regulator VieS" species:686 "Vibrio cholerae O1
biovar El Tor" [GO:0000155 "phosphorelay sensor kinase activity"
evidence=ISS] [GO:0000156 "phosphorelay response regulator
activity" evidence=ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=ISS] InterPro:IPR000014
InterPro:IPR001638 InterPro:IPR001789 InterPro:IPR003594
InterPro:IPR003661 InterPro:IPR004358 InterPro:IPR008207
InterPro:IPR009082 Pfam:PF00072 Pfam:PF00497 Pfam:PF00512
Pfam:PF01627 Pfam:PF02518 PRINTS:PR00344 PROSITE:PS50110
PROSITE:PS50894 SMART:SM00062 SMART:SM00073 SMART:SM00091
SMART:SM00387 SMART:SM00388 SMART:SM00448 InterPro:IPR005467
GO:GO:0005524 GO:GO:0016020 GO:GO:0006355 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0005215 GO:GO:0030288 GO:GO:0005622
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172 GO:GO:0000155
Gene3D:1.10.287.130 Gene3D:3.30.565.10 SUPFAM:SSF55874
SUPFAM:SSF47384 PROSITE:PS50109 Gene3D:1.20.120.160 SUPFAM:SSF47226
KO:K07679 HSSP:Q56310 PIR:A82174 RefSeq:NP_231290.1
ProteinModelPortal:Q9KRI8 DNASU:2613784 GeneID:2613784
KEGG:vch:VC1653 PATRIC:20082368 OMA:IGCTANA ProtClustDB:CLSK874479
Uniprot:Q9KRI8
Length = 1146
Score = 141 (54.7 bits), Expect = 9.7e-08, P = 9.7e-08
Identities = 39/129 (30%), Positives = 67/129 (51%)
Query: 31 HVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIIT 90
HVL DD ++R +I++ L+ T V G +A + L EQ DL+IT
Sbjct: 919 HVLVADDDAINRLLIKKQLSELGLSATLVSDGLQAFEKLSQHPEQ---------YDLLIT 969
Query: 91 DYCMPGMTGYELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVKLSDV 150
D MP + G+ L +K+K +L + VV ++E+ ++ L+ G + I KP L+++
Sbjct: 970 DCHMPHLDGFALTRKVKQEISLFKGAVVGCTAEDSRLAAEQALQAGMDKVIYKPYTLANL 1029
Query: 151 KRIKD-YLT 158
+++ YLT
Sbjct: 1030 RKVLSRYLT 1038
>TIGR_CMR|GSU_2212 [details] [associations]
symbol:GSU_2212 "chemotaxis protein CheY" species:243231
"Geobacter sulfurreducens PCA" [GO:0004871 "signal transducer
activity" evidence=ISS] [GO:0006935 "chemotaxis" evidence=ISS]
InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110 SMART:SM00448
GO:GO:0006355 GO:GO:0035556 GO:GO:0005622 EMBL:AE017180
GenomeReviews:AE017180_GR GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 HOGENOM:HOG000034820 KO:K03413 HSSP:P06143
RefSeq:NP_953261.1 ProteinModelPortal:Q74AY7 GeneID:2687085
KEGG:gsu:GSU2212 PATRIC:22027279 OMA:SSAMRRQ ProtClustDB:CLSK924580
BioCyc:GSUL243231:GH27-2150-MONOMER Uniprot:Q74AY7
Length = 128
Score = 121 (47.7 bits), Expect = 1.1e-07, P = 1.1e-07
Identities = 28/87 (32%), Positives = 48/87 (55%)
Query: 70 GLDEEQSINGFDGLK------VDLIITDYCMPGMTGYELLKKIKDSSALREIPVVIMSSE 123
G+ ++ +G DGLK +DLI+TD MP M G +L+ ++ + R +P+ I+++E
Sbjct: 28 GISIVEASDGVDGLKKLSAHAIDLILTDINMPVMDGLKLVSLVRSDPSHRHLPIAIITTE 87
Query: 124 NILARIDRCLEDGAEDFIVKPVKLSDV 150
+R L GA +I KP++ V
Sbjct: 88 GAAEDRERALALGANAYITKPIQAGRV 114
>TIGR_CMR|GSU_2574 [details] [associations]
symbol:GSU_2574 "response regulator" species:243231
"Geobacter sulfurreducens PCA" [GO:0000156 "phosphorelay response
regulator activity" evidence=ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=ISS] InterPro:IPR001789
InterPro:IPR003607 InterPro:IPR006674 Pfam:PF00072 Pfam:PF01966
PROSITE:PS50110 SMART:SM00448 SMART:SM00471 GO:GO:0006355
GO:GO:0035556 GO:GO:0046872 GO:GO:0008152 GO:GO:0005622
EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 GO:GO:0008081
Gene3D:1.10.3210.10 HOGENOM:HOG000266481 RefSeq:NP_953620.1
ProteinModelPortal:Q74A17 GeneID:2686365 KEGG:gsu:GSU2574
PATRIC:22028001 KO:K07814 OMA:HTRRISE ProtClustDB:CLSK746108
BioCyc:GSUL243231:GH27-2551-MONOMER Uniprot:Q74A17
Length = 368
Score = 137 (53.3 bits), Expect = 1.2e-07, P = 1.2e-07
Identities = 43/158 (27%), Positives = 84/158 (53%)
Query: 28 EEVHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDL 87
+ + VL VDD ++R+++ +L + +TA +G AL+ L D+ +I DL
Sbjct: 3 DSISVLVVDDEEMNRELLSVMLDGLATPITA-QNGLEALRVL--DKNSAI--------DL 51
Query: 88 IITDYCMPGMTGYELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVKL 147
I+ D MP + G+ L +K +IPV+++++ + R L GA DF+ KP
Sbjct: 52 ILLDLEMPELNGFATLATLKKHPLWCDIPVIVLTASK--DEVTRTLRLGANDFLAKPYDT 109
Query: 148 SDVK-RIKDYLTRD--VNLGNEGRGINKRK-ARESCDL 181
+++ R+ +++ V+L + GI +R+ AR++ ++
Sbjct: 110 EELRLRVMNHVRAKKLVDLSQDVNGILEREVARKTAEV 147
>TIGR_CMR|GSU_1286 [details] [associations]
symbol:GSU_1286 "chemotaxis protein CheY" species:243231
"Geobacter sulfurreducens PCA" [GO:0004871 "signal transducer
activity" evidence=ISS] [GO:0006935 "chemotaxis" evidence=ISS]
InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110 SMART:SM00448
GO:GO:0006355 GO:GO:0035556 GO:GO:0005622 EMBL:AE017180
GenomeReviews:AE017180_GR GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 HOGENOM:HOG000034820 KO:K03413 RefSeq:NP_952339.1
ProteinModelPortal:Q74DN0 GeneID:2686542 KEGG:gsu:GSU1286
PATRIC:22025343 OMA:CMDIMMP ProtClustDB:CLSK2522233
BioCyc:GSUL243231:GH27-1254-MONOMER Uniprot:Q74DN0
Length = 131
Score = 120 (47.3 bits), Expect = 1.4e-07, P = 1.4e-07
Identities = 40/135 (29%), Positives = 72/135 (53%)
Query: 33 LAVDDSFVDRKVIERLLT-ISSCKVTAVDSGRRALQ-F-LGLDEEQSINGFDGLKVDLII 89
L V+D F+ RK+++ LLT + C + A D G A+Q F L LDE + DL+
Sbjct: 4 LIVEDDFISRKIMKELLTSLGECDI-ATD-GEEAVQAFRLALDEHRPY--------DLVC 53
Query: 90 TDYCMPGMTGYELLKKIKDS------SALREIPVVIMSS-ENILARIDRCLEDGAEDFIV 142
D MP M G+E L++I++ + +E+ V++ ++ ++ ++ GA ++V
Sbjct: 54 MDIMMPNMDGHEALEQIREIERGMGLNGAQEVKVIMTTALDDPKNVVEAFYRGGATSYLV 113
Query: 143 KPV-KLSDVKRIKDY 156
KP+ K +K I+ +
Sbjct: 114 KPITKQRLMKEIRSH 128
>TIGR_CMR|CHY_2567 [details] [associations]
symbol:CHY_2567 "DNA-binding response regulator"
species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0000156 "phosphorelay response regulator activity"
evidence=ISS] [GO:0000160 "phosphorelay signal transduction system"
evidence=ISS] InterPro:IPR001789 InterPro:IPR001867 Pfam:PF00072
Pfam:PF00486 PROSITE:PS50110 SMART:SM00448 SMART:SM00862
GO:GO:0006355 GO:GO:0035556 GO:GO:0003677 EMBL:CP000141
GenomeReviews:CP000141_GR Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0005622 GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
eggNOG:COG0745 HOGENOM:HOG000034819 KO:K02483 RefSeq:YP_361360.1
ProteinModelPortal:Q3A924 SMR:Q3A924 STRING:Q3A924 GeneID:3728531
KEGG:chy:CHY_2567 PATRIC:21278183
BioCyc:CHYD246194:GJCN-2566-MONOMER Uniprot:Q3A924
Length = 236
Score = 133 (51.9 bits), Expect = 1.5e-07, P = 1.5e-07
Identities = 30/88 (34%), Positives = 56/88 (63%)
Query: 75 QSINGFDGLKVDLIITDYCMPGMTGYELLKKIKDSSALREIPVVIMSSENILARIDRCL- 133
+++N F K DLI+ D+ MP M+G E+L++I+ S +IP+++++++ +D+ +
Sbjct: 37 EALNSFYKEKPDLIVLDWMMPEMSGIEVLREIRKKS---QIPIIMLTAKT--EEVDKLIG 91
Query: 134 -EDGAEDFIVKPVKLSDVK-RIKDYLTR 159
E G +D++VKP L ++ RIK L R
Sbjct: 92 FEFGVDDYVVKPFSLRELSARIKTILKR 119
>UNIPROTKB|Q52879 [details] [associations]
symbol:cheY1 "CheY1" species:382 "Sinorhizobium meliloti"
[GO:0005515 "protein binding" evidence=IPI] InterPro:IPR001789
Pfam:PF00072 PROSITE:PS50110 SMART:SM00448 GO:GO:0006355
GO:GO:0035556 GO:GO:0005622 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 HSSP:P06657 HOGENOM:HOG000034820 EMBL:U13166
GenomeReviews:AL591688_GR PIR:S61833 ProteinModelPortal:Q52879
IntAct:Q52879 PATRIC:23630491 ProtClustDB:CLSK881447 Uniprot:Q52879
Length = 121
Score = 119 (46.9 bits), Expect = 1.8e-07, P = 1.8e-07
Identities = 35/126 (27%), Positives = 66/126 (52%)
Query: 32 VLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITD 91
VL VDDS + I +L VT ++G +Q D + + D D+I+TD
Sbjct: 5 VLTVDDS----RTIRNMLL-----VTLNNAGFETIQ--AEDGVEGLEKLDTANPDVIVTD 53
Query: 92 YCMPGMTGYELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKP---VKLS 148
MP + G+ ++ ++ + R +P++++++E+ + +R + GA +IVKP KL
Sbjct: 54 INMPRLDGFGFIEGVRKNDRYRAVPILVLTTESDAEKKNRARQAGATGWIVKPFDPTKLI 113
Query: 149 D-VKRI 153
D ++R+
Sbjct: 114 DAIERV 119
>UNIPROTKB|P0AFJ5 [details] [associations]
symbol:phoB "PhoB transcriptional dual regulator"
species:83333 "Escherichia coli K-12" [GO:0000156 "phosphorelay
response regulator activity" evidence=IEA] [GO:0035556
"intracellular signal transduction" evidence=IEA] [GO:0001108
"bacterial-type RNA polymerase holo enzyme binding" evidence=IMP]
[GO:2000142 "regulation of DNA-dependent transcription, initiation"
evidence=IDA] [GO:0006817 "phosphate ion transport" evidence=IEA]
[GO:0006810 "transport" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0000160
"phosphorelay signal transduction system" evidence=IEA]
InterPro:IPR001789 InterPro:IPR001867 InterPro:IPR011879
Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110 SMART:SM00448
SMART:SM00862 GO:GO:0005737 GO:GO:0035556 EMBL:U00096 EMBL:AP009048
GenomeReviews:AP009048_GR GenomeReviews:U00096_GR GO:GO:0003677
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0006351 EMBL:U73857
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172 GO:GO:0006817
eggNOG:COG0745 HOGENOM:HOG000034819 GO:GO:0001108 EMBL:X04026
PIR:A24256 RefSeq:NP_414933.1 RefSeq:YP_488691.1 PDB:1B00 PDB:1GXP
PDB:1GXQ PDB:1QQI PDB:1ZES PDB:2IYN PDB:2JB9 PDB:2JBA PDB:2Z33
PDB:3T72 PDBsum:1B00 PDBsum:1GXP PDBsum:1GXQ PDBsum:1QQI
PDBsum:1ZES PDBsum:2IYN PDBsum:2JB9 PDBsum:2JBA PDBsum:2Z33
PDBsum:3T72 ProteinModelPortal:P0AFJ5 SMR:P0AFJ5 DIP:DIP-35852N
IntAct:P0AFJ5 MINT:MINT-1313174 EnsemblBacteria:EBESCT00000002796
EnsemblBacteria:EBESCT00000016242 GeneID:12930822 GeneID:945046
KEGG:ecj:Y75_p0387 KEGG:eco:b0399 PATRIC:32115943 EchoBASE:EB0721
EcoGene:EG10728 KO:K07657 OMA:QVLEMGP ProtClustDB:PRK10161
BioCyc:EcoCyc:PHOB-MONOMER BioCyc:ECOL316407:JW0389-MONOMER
EvolutionaryTrace:P0AFJ5 Genevestigator:P0AFJ5 GO:GO:2000142
TIGRFAMs:TIGR02154 Uniprot:P0AFJ5
Length = 229
Score = 132 (51.5 bits), Expect = 1.9e-07, P = 1.9e-07
Identities = 31/89 (34%), Positives = 51/89 (57%)
Query: 72 DEEQSINGFDGLKVDLIITDYCMPGMTGYELLKKIKDSSALREIPVVIMSSENILARIDR 131
D + ++N + DLI+ D+ +PG +G + +K +K S R+IPVV++++ R
Sbjct: 34 DYDSAVNQLNEPWPDLILLDWMLPGGSGIQFIKHLKRESMTRDIPVVMLTARGEEEDRVR 93
Query: 132 CLEDGAEDFIVKPVKLSD-VKRIKDYLTR 159
LE GA+D+I KP + V RIK + R
Sbjct: 94 GLETGADDYITKPFSPKELVARIKAVMRR 122
>UNIPROTKB|Q3ADB1 [details] [associations]
symbol:cheY1 "Chemotaxis protein CheY" species:246194
"Carboxydothermus hydrogenoformans Z-2901" [GO:0004871 "signal
transducer activity" evidence=ISS] [GO:0006935 "chemotaxis"
evidence=ISS] InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110
SMART:SM00448 GO:GO:0006355 GO:GO:0035556 EMBL:CP000141
GenomeReviews:CP000141_GR GO:GO:0005622 GO:GO:0006935 GO:GO:0004871
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG0784
HOGENOM:HOG000034820 RefSeq:YP_359873.1 ProteinModelPortal:Q3ADB1
STRING:Q3ADB1 GeneID:3728270 KEGG:chy:CHY_1026 PATRIC:21275187
OMA:GATAWIT BioCyc:CHYD246194:GJCN-1025-MONOMER Uniprot:Q3ADB1
Length = 120
Score = 118 (46.6 bits), Expect = 2.5e-07, P = 2.5e-07
Identities = 35/113 (30%), Positives = 56/113 (49%)
Query: 32 VLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITD 91
+LA+DDS + I+ L +V G AL LG + K DLIITD
Sbjct: 4 ILALDDSATMLQSIKISLLRKGHQVATFTKGSEALDMLGKE-----------KFDLIITD 52
Query: 92 YCMPGMTGYELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKP 144
MP M G ++K++ S + PV+++++E+ A+ ++ GA +I KP
Sbjct: 53 LNMPEMDGITFIQKVRALSNYKFTPVIVLTTESQAAKKEQARRAGATAWITKP 105
>UNIPROTKB|Q7D1A8 [details] [associations]
symbol:cheY "Chemotaxis receiver protein" species:176299
"Agrobacterium fabrum str. C58" [GO:0006928 "cellular component
movement" evidence=IGC] [GO:0052143 "chemotaxis on or near host
involved in symbiotic interaction" evidence=IGC] InterPro:IPR001789
Pfam:PF00072 PROSITE:PS50110 SMART:SM00448 GO:GO:0006355
GO:GO:0035556 GO:GO:0006928 GO:GO:0005622 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG0784
HOGENOM:HOG000034820 EMBL:AE007869 GenomeReviews:AE007869_GR
GO:GO:0052143 KO:K03413 ProtClustDB:CLSK881447 HSSP:P06143
RefSeq:NP_353545.1 ProteinModelPortal:Q7D1A8 STRING:Q7D1A8
GeneID:1132554 KEGG:atu:Atu0516 PATRIC:20810735 OMA:KNDRYRA
Uniprot:Q7D1A8
Length = 121
Score = 118 (46.6 bits), Expect = 2.5e-07, P = 2.5e-07
Identities = 34/116 (29%), Positives = 62/116 (53%)
Query: 55 KVTAVDSGRRALQFL-------GLDEEQSINGFDGLKV------DLIITDYCMPGMTGYE 101
KV VD R L G + Q+ +G +GL+V D+I+TD MP + G+
Sbjct: 4 KVLTVDDSRTIRNMLLVTLNNAGFETIQAEDGIEGLEVLEQSNPDVIVTDINMPRLDGFG 63
Query: 102 LLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKP---VKLSD-VKRI 153
++ ++ + R IP++++++E+ + +R + GA +IVKP KL D ++R+
Sbjct: 64 FIEGVRRNEKYRAIPILVLTTESDAEKKNRARQAGATGWIVKPFDPAKLIDAIERV 119
>TIGR_CMR|CHY_1026 [details] [associations]
symbol:CHY_1026 "chemotaxis protein CheY" species:246194
"Carboxydothermus hydrogenoformans Z-2901" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0004871 "signal transducer activity" evidence=ISS] [GO:0006935
"chemotaxis" evidence=ISS] InterPro:IPR001789 Pfam:PF00072
PROSITE:PS50110 SMART:SM00448 GO:GO:0006355 GO:GO:0035556
EMBL:CP000141 GenomeReviews:CP000141_GR GO:GO:0005622 GO:GO:0006935
GO:GO:0004871 GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
eggNOG:COG0784 HOGENOM:HOG000034820 RefSeq:YP_359873.1
ProteinModelPortal:Q3ADB1 STRING:Q3ADB1 GeneID:3728270
KEGG:chy:CHY_1026 PATRIC:21275187 OMA:GATAWIT
BioCyc:CHYD246194:GJCN-1025-MONOMER Uniprot:Q3ADB1
Length = 120
Score = 118 (46.6 bits), Expect = 2.5e-07, P = 2.5e-07
Identities = 35/113 (30%), Positives = 56/113 (49%)
Query: 32 VLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITD 91
+LA+DDS + I+ L +V G AL LG + K DLIITD
Sbjct: 4 ILALDDSATMLQSIKISLLRKGHQVATFTKGSEALDMLGKE-----------KFDLIITD 52
Query: 92 YCMPGMTGYELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKP 144
MP M G ++K++ S + PV+++++E+ A+ ++ GA +I KP
Sbjct: 53 LNMPEMDGITFIQKVRALSNYKFTPVIVLTTESQAAKKEQARRAGATAWITKP 105
>NCBI_NP|NP_353545.1 [details] [associations]
symbol:cheY "chemotaxisreceiverprotein" species:176299
"Agrobacterium fabrum str. C58" [GO:0052143 "chemotaxis on or near
host involved in symbiotic interaction" evidence=IGC] [GO:0006928
"cellular component movement" evidence=IGC] REFSEQ:NC_003062
Ncbi:NP_353545
Length = 121
Score = 118 (46.6 bits), Expect = 2.5e-07, P = 2.5e-07
Identities = 34/116 (29%), Positives = 62/116 (53%)
Query: 55 KVTAVDSGRRALQFL-------GLDEEQSINGFDGLKV------DLIITDYCMPGMTGYE 101
KV VD R L G + Q+ +G +GL+V D+I+TD MP + G+
Sbjct: 4 KVLTVDDSRTIRNMLLVTLNNAGFETIQAEDGIEGLEVLEQSNPDVIVTDINMPRLDGFG 63
Query: 102 LLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKP---VKLSD-VKRI 153
++ ++ + R IP++++++E+ + +R + GA +IVKP KL D ++R+
Sbjct: 64 FIEGVRRNEKYRAIPILVLTTESDAEKKNRARQAGATGWIVKPFDPAKLIDAIERV 119
>UNIPROTKB|G3LTY8 [details] [associations]
symbol:phoB "Two-component regulator protein" species:636
"Edwardsiella tarda" [GO:0005515 "protein binding" evidence=IPI]
InterPro:IPR001789 InterPro:IPR001867 InterPro:IPR011879
Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110 SMART:SM00448
SMART:SM00862 GO:GO:0006355 GO:GO:0035556 GO:GO:0003677
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005622 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 GO:GO:0006817 TIGRFAMs:TIGR02154
EMBL:JN543949 Uniprot:G3LTY8
Length = 229
Score = 131 (51.2 bits), Expect = 2.7e-07, P = 2.7e-07
Identities = 30/75 (40%), Positives = 47/75 (62%)
Query: 86 DLIITDYCMPGMTGYELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPV 145
DLI+ D+ +PG +G +L+K++K A REIPV+++++ R LE GA+D+I KP
Sbjct: 48 DLILLDWMLPGGSGIQLIKQLKREPATREIPVMMLTARGEEEDRVRGLEVGADDYITKPF 107
Query: 146 KLSD-VKRIKDYLTR 159
+ V RIK + R
Sbjct: 108 SPKELVARIKAVMRR 122
>TIGR_CMR|GSU_0598 [details] [associations]
symbol:GSU_0598 "sigma-54 dependent DNA-binding response
regulator" species:243231 "Geobacter sulfurreducens PCA"
[GO:0000156 "phosphorelay response regulator activity"
evidence=ISS] [GO:0000160 "phosphorelay signal transduction system"
evidence=ISS] [GO:0003677 "DNA binding" evidence=ISS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] InterPro:IPR001789 InterPro:IPR002078
InterPro:IPR002197 InterPro:IPR003593 InterPro:IPR009057
Pfam:PF00072 Pfam:PF00158 Pfam:PF02954 PROSITE:PS50045
PROSITE:PS50110 SMART:SM00382 SMART:SM00448 GO:GO:0005524
GO:GO:0035556 GO:GO:0003677 GO:GO:0003700 GO:GO:0006351
GO:GO:0005622 Gene3D:1.10.10.60 SUPFAM:SSF46689 EMBL:AE017180
GenomeReviews:AE017180_GR GO:GO:0017111 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000058489
InterPro:IPR025662 InterPro:IPR025943 InterPro:IPR025944
PROSITE:PS00675 PROSITE:PS00676 PROSITE:PS00688 HSSP:P06143
RefSeq:NP_951656.1 ProteinModelPortal:Q74FK9 GeneID:2688651
KEGG:gsu:GSU0598 PATRIC:22023947 OMA:SGMEVLK ProtClustDB:CLSK827940
BioCyc:GSUL243231:GH27-583-MONOMER Uniprot:Q74FK9
Length = 470
Score = 136 (52.9 bits), Expect = 2.7e-07, P = 2.7e-07
Identities = 41/117 (35%), Positives = 61/117 (52%)
Query: 28 EEVHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDL 87
E + VL VDD + R+ + R+L V SG+ AL+ L DE L
Sbjct: 2 ENIDVLVVDDEAIIREGLRRILEKEGYHVETSASGQIALERLQ-DENYG----------L 50
Query: 88 IITDYCMPGMTGYELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKP 144
+ITD MPGM+G E+LK IK E+PV+I++ + + +++GA D+I KP
Sbjct: 51 VITDLKMPGMSGMEVLKAIKVLQP--EVPVIIITGFSTVDTAVEAMKNGAFDYIAKP 105
>UNIPROTKB|Q7Y0W3 [details] [associations]
symbol:Q7Y0W3 "Two-component response regulator EHD1"
species:39946 "Oryza sativa Indica Group" [GO:0003677 "DNA binding"
evidence=IDA] [GO:0048576 "positive regulation of short-day
photoperiodism, flowering" evidence=IMP] InterPro:IPR001005
InterPro:IPR001789 InterPro:IPR009057 Pfam:PF00072 Pfam:PF00249
PROSITE:PS50110 SMART:SM00448 GO:GO:0005634 GO:GO:0006355
GO:GO:0035556 GO:GO:0003677 GO:GO:0006351 GO:GO:0003682
Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0009908 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HSSP:O49397 InterPro:IPR017930
InterPro:IPR006447 TIGRFAMs:TIGR01557 PROSITE:PS51294
eggNOG:NOG265546 InterPro:IPR017053 PIRSF:PIRSF036392 EMBL:AB092508
ProteinModelPortal:Q7Y0W3 SMR:Q7Y0W3 KEGG:dosa:Os10t0463400-01
Gramene:Q7Y0W3 HOGENOM:HOG000084878 GO:GO:0048576 Uniprot:Q7Y0W3
Length = 341
Score = 134 (52.2 bits), Expect = 3.1e-07, P = 3.1e-07
Identities = 41/130 (31%), Positives = 66/130 (50%)
Query: 30 VHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLII 89
+ VL +DD V+E LL S KVT + R A+ F+ LD Q VDL+I
Sbjct: 11 LRVLVIDDDCSYLSVMEDLLLKCSYKVTTYKNVREAVPFI-LDNPQI--------VDLVI 61
Query: 90 TDYCMPGMTGYELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVKLSD 149
+D P G +L+++ IP VIM+S + + + +GA DF++KPV++ +
Sbjct: 62 SDAFFPTEDGLLILQEVTSKFG---IPTVIMASSGDTNTVMKYVANGAFDFLLKPVRIEE 118
Query: 150 VKRIKDYLTR 159
+ I ++ R
Sbjct: 119 LSNIWQHIFR 128
>UNIPROTKB|Q7Y0W5 [details] [associations]
symbol:EHD1 "Two-component response regulator EHD1"
species:39947 "Oryza sativa Japonica Group" [GO:0048576 "positive
regulation of short-day photoperiodism, flowering" evidence=IMP]
InterPro:IPR001005 InterPro:IPR001789 InterPro:IPR009057
Pfam:PF00072 Pfam:PF00249 PROSITE:PS50110 SMART:SM00448
GO:GO:0005634 GO:GO:0006355 GO:GO:0035556 GO:GO:0003677
GO:GO:0006351 GO:GO:0003682 Gene3D:1.10.10.60 SUPFAM:SSF46689
EMBL:DP000086 EMBL:CM000147 GO:GO:0009908 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HSSP:O49397 InterPro:IPR017930
InterPro:IPR006447 TIGRFAMs:TIGR01557 PROSITE:PS51294
InterPro:IPR017053 PIRSF:PIRSF036392 GO:GO:0048576 EMBL:AB092506
EMBL:AB092507 EMBL:AC027038 ProteinModelPortal:Q7Y0W5
Gramene:Q7Y0W5 eggNOG:KOG1601 Uniprot:Q7Y0W5
Length = 341
Score = 134 (52.2 bits), Expect = 3.1e-07, P = 3.1e-07
Identities = 41/130 (31%), Positives = 66/130 (50%)
Query: 30 VHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLII 89
+ VL +DD V+E LL S KVT + R A+ F+ LD Q VDL+I
Sbjct: 11 LRVLVIDDDCSYLSVMEDLLLKCSYKVTTYKNVREAVPFI-LDNPQI--------VDLVI 61
Query: 90 TDYCMPGMTGYELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVKLSD 149
+D P G +L+++ IP VIM+S + + + +GA DF++KPV++ +
Sbjct: 62 SDAFFPTEDGLLILQEVTSKFG---IPTVIMASSGDTNTVMKYVANGAFDFLLKPVRIEE 118
Query: 150 VKRIKDYLTR 159
+ I ++ R
Sbjct: 119 LSNIWQHIFR 128
>UNIPROTKB|Q0C4H5 [details] [associations]
symbol:cheY "Chemotaxis protein CheY" species:228405
"Hyphomonas neptunium ATCC 15444" [GO:0004871 "signal transducer
activity" evidence=ISS] [GO:0006935 "chemotaxis" evidence=ISS]
InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110 SMART:SM00448
GO:GO:0006355 GO:GO:0035556 GO:GO:0005622 GO:GO:0006935
GO:GO:0004871 GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
eggNOG:COG0784 HOGENOM:HOG000034820 EMBL:CP000158
GenomeReviews:CP000158_GR KO:K03413 RefSeq:YP_759368.1
ProteinModelPortal:Q0C4H5 STRING:Q0C4H5 GeneID:4290241
KEGG:hne:HNE_0639 PATRIC:32214082 OMA:WNMPVMN
BioCyc:HNEP228405:GI69-682-MONOMER Uniprot:Q0C4H5
Length = 121
Score = 117 (46.2 bits), Expect = 3.3e-07, P = 3.3e-07
Identities = 36/112 (32%), Positives = 53/112 (47%)
Query: 33 LAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDY 92
L VDDS V RKV R++ VT G AL+ +S+ D I+ D+
Sbjct: 5 LVVDDSRVVRKVASRIVRDLGFSVTEAGDGAEALKMC----RESMP-------DAILLDW 53
Query: 93 CMPGMTGYELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKP 144
MP M G + L+ ++ + +V S EN I+ L GA++FI+KP
Sbjct: 54 NMPTMNGIDFLRALRREEGGKVPRIVFCSIENDPEHINEALRSGADEFIMKP 105
>TIGR_CMR|BA_4920 [details] [associations]
symbol:BA_4920 "DNA-binding response regulator"
species:198094 "Bacillus anthracis str. Ames" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] InterPro:IPR001789 InterPro:IPR001867
InterPro:IPR016032 Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110
SMART:SM00448 SMART:SM00862 GO:GO:0006355 GO:GO:0035556
EMBL:AE016879 EMBL:AE017334 GenomeReviews:AE016879_GR
GenomeReviews:AE017334_GR GO:GO:0003677 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0006351 GO:GO:0005622 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034819
SUPFAM:SSF46894 HSSP:P08402 RefSeq:NP_847118.1 RefSeq:YP_021563.2
ProteinModelPortal:Q81KS0 DNASU:1084104
EnsemblBacteria:EBBACT00000011298 EnsemblBacteria:EBBACT00000014550
GeneID:1084104 GeneID:2819868 KEGG:ban:BA_4920 KEGG:bar:GBAA_4920
PATRIC:18787418 OMA:FFVTHPN ProtClustDB:CLSK882384
BioCyc:BANT261594:GJ7F-4779-MONOMER Uniprot:Q81KS0
Length = 229
Score = 130 (50.8 bits), Expect = 3.7e-07, P = 3.7e-07
Identities = 43/137 (31%), Positives = 76/137 (55%)
Query: 32 VLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITD 91
+L ++D ++ L I+ +V SG LQ + L E+ DLII D
Sbjct: 4 ILLIEDEVSIAELQRDYLEINDFQVDVEHSGETGLQ-MALQEDY----------DLIILD 52
Query: 92 YCMPGMTGYELLKKIKDSSALREIPVVIMSSENI-LARIDRCLEDGAEDFIVKPVKLSD- 149
+P M G+E+ K+I+ A+++IP++++S++ + +I R L GA+D+I KP S+
Sbjct: 53 IMLPKMNGFEICKQIR---AIKDIPILLVSAKKEDIDKI-RGLGLGADDYITKPFSPSEL 108
Query: 150 VKRIKDYLTR-DVNLGN 165
V R+K +++R + LGN
Sbjct: 109 VARVKAHISRYERLLGN 125
>TIGR_CMR|NSE_0512 [details] [associations]
symbol:NSE_0512 "response regulator/GGDEF domain protein"
species:222891 "Neorickettsia sennetsu str. Miyayama" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
InterPro:IPR001054 InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110
SMART:SM00448 Pfam:PF00990 GO:GO:0006355 GO:GO:0005622
SUPFAM:SSF55073 GO:GO:0016849 GO:GO:0009190 InterPro:IPR000160
SMART:SM00267 TIGRFAMs:TIGR00254 PROSITE:PS50887 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG3706 EMBL:CP000237
GenomeReviews:CP000237_GR KO:K02488 HOGENOM:HOG000167204
ProtClustDB:PRK09581 RefSeq:YP_506396.1 ProteinModelPortal:Q2GDQ0
STRING:Q2GDQ0 GeneID:3931788 KEGG:nse:NSE_0512 PATRIC:22681073
OMA:TELGIND BioCyc:NSEN222891:GHFU-532-MONOMER Uniprot:Q2GDQ0
Length = 456
Score = 135 (52.6 bits), Expect = 3.9e-07, P = 3.9e-07
Identities = 41/127 (32%), Positives = 63/127 (49%)
Query: 32 VLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITD 91
+L VDD + K++E LT +V SG A++ + Q D+I+ D
Sbjct: 5 ILVVDDIPSNIKILEIKLTAKYYQVITASSGIAAIELA--KQHQP---------DVILLD 53
Query: 92 YCMPGMTGYELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVK-LSDV 150
MP M G+E +++K A IPV+I+++ N + L GA+DF+VKP K +
Sbjct: 54 VMMPEMDGFETCRRLKSDYATMHIPVIIVTALNDIENKVEGLNSGADDFLVKPAKDFTLF 113
Query: 151 KRIKDYL 157
RIK L
Sbjct: 114 IRIKSLL 120
>TAIR|locus:2061971 [details] [associations]
symbol:CKI1 "CYTOKININ-INDEPENDENT 1" species:3702
"Arabidopsis thaliana" [GO:0000155 "phosphorelay sensor kinase
activity" evidence=IEA] [GO:0000156 "phosphorelay response
regulator activity" evidence=IEA;TAS] [GO:0000160 "phosphorelay
signal transduction system" evidence=IEA] [GO:0004673 "protein
histidine kinase activity" evidence=IEA;ISS;IDA] [GO:0004871
"signal transducer activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005886 "plasma membrane"
evidence=ISM;IDA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0007165 "signal transduction"
evidence=IEA] [GO:0016020 "membrane" evidence=IEA;IDA] [GO:0016310
"phosphorylation" evidence=IEA] [GO:0016772 "transferase activity,
transferring phosphorus-containing groups" evidence=IEA]
[GO:0018106 "peptidyl-histidine phosphorylation" evidence=IEA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0009736 "cytokinin
mediated signaling pathway" evidence=TAS] [GO:0010087 "phloem or
xylem histogenesis" evidence=IMP] [GO:0042803 "protein
homodimerization activity" evidence=IDA] [GO:0080117 "secondary
growth" evidence=IMP] [GO:0009553 "embryo sac development"
evidence=IMP] [GO:0009506 "plasmodesma" evidence=IDA]
InterPro:IPR001789 InterPro:IPR003594 InterPro:IPR003661
InterPro:IPR004358 InterPro:IPR009082 Pfam:PF00072 Pfam:PF00512
Pfam:PF02518 PRINTS:PR00344 PROSITE:PS50110 SMART:SM00387
SMART:SM00388 SMART:SM00448 InterPro:IPR005467 GO:GO:0016021
GO:GO:0005886 GO:GO:0009506 GO:GO:0005524 GO:GO:0042803
EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0006355 GO:GO:0035556
GO:GO:0005622 GO:GO:0009736 GO:GO:0023014 GO:GO:0010087
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172 GO:GO:0000155
Gene3D:1.10.287.130 Gene3D:3.30.565.10 SUPFAM:SSF55874
SUPFAM:SSF47384 PROSITE:PS50109 eggNOG:COG0642 GO:GO:0004673
GO:GO:0080117 GO:GO:0009553 EMBL:AC002535 EMBL:D87545 EMBL:EF598269
EMBL:EF598270 EMBL:EF598271 EMBL:EF598272 EMBL:EF598273
EMBL:EF598274 EMBL:EF598275 EMBL:EF598276 EMBL:EF598277
EMBL:EF598278 EMBL:EF598279 EMBL:EF598280 EMBL:EF598281
EMBL:EF598282 EMBL:EF598283 EMBL:EF598284 EMBL:EF598285
EMBL:EF598286 EMBL:EF598287 EMBL:EF598288 EMBL:EF598289
EMBL:EF598290 EMBL:EF598291 IPI:IPI00546838 PIR:T00441
RefSeq:NP_182265.1 UniGene:At.341 PDB:3MM4 PDB:3MMN PDBsum:3MM4
PDBsum:3MMN ProteinModelPortal:O22267 SMR:O22267 IntAct:O22267
STRING:O22267 PaxDb:O22267 PRIDE:O22267 EnsemblPlants:AT2G47430.1
GeneID:819356 KEGG:ath:AT2G47430 TAIR:At2g47430
HOGENOM:HOG000114067 InParanoid:O22267 OMA:CPSSREL PhylomeDB:O22267
ProtClustDB:CLSN2913155 Genevestigator:O22267 Uniprot:O22267
Length = 1122
Score = 138 (53.6 bits), Expect = 3.9e-07, P = 3.9e-07
Identities = 45/140 (32%), Positives = 74/140 (52%)
Query: 24 PSDTEEVH---VLAVDDSFVDRKVIE-RLLTISSCKVTAVDSGRRALQFL--GLDEEQSI 77
PSD E + VL VDD+F+ RKV +L + +V DSG+ AL+ + GL + +
Sbjct: 977 PSDDEFLRGKRVLVVDDNFISRKVATGKLKKMGVSEVEQCDSGKEALRLVTEGLTQREEQ 1036
Query: 78 NGFDGLKVDLIITDYCMPGMTGYEL---LKKIKDSSALREIPVVIMSSENILARIDR-CL 133
D L D I D MP M GYE ++K++ S +R P++ +S + + R +
Sbjct: 1037 GSVDKLPFDYIFMDCQMPEMDGYEATREIRKVEKSYGVRT-PIIAVSGHDPGSEEARETI 1095
Query: 134 EDGAEDFIVKPV-KLSDVKR 152
+ G + F+ K + +L++V R
Sbjct: 1096 QAGMDAFLDKSLNQLANVIR 1115
>TIGR_CMR|BA_0996 [details] [associations]
symbol:BA_0996 "sensor histidine kinase/response regulator"
species:198094 "Bacillus anthracis str. Ames" [GO:0000155
"phosphorelay sensor kinase activity" evidence=ISS] [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
InterPro:IPR003018 InterPro:IPR001789 InterPro:IPR003594
InterPro:IPR003660 InterPro:IPR003661 InterPro:IPR004358
InterPro:IPR009082 Pfam:PF00072 Pfam:PF00512 Pfam:PF00672
Pfam:PF02518 Pfam:PF13185 PRINTS:PR00344 PROSITE:PS50110
PROSITE:PS50885 SMART:SM00065 SMART:SM00304 SMART:SM00387
SMART:SM00388 SMART:SM00448 InterPro:IPR005467 GO:GO:0016021
GO:GO:0005524 GO:GO:0006355 GO:GO:0035556 EMBL:AE016879
EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0005622
GO:GO:0023014 GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
GO:GO:0000155 Gene3D:1.10.287.130 Gene3D:3.30.565.10
SUPFAM:SSF55874 SUPFAM:SSF47384 PROSITE:PS50109 KO:K03407
HSSP:P52934 RefSeq:NP_843497.1 RefSeq:YP_017624.1
RefSeq:YP_027206.1 ProteinModelPortal:Q81U88 DNASU:1088076
EnsemblBacteria:EBBACT00000011936 EnsemblBacteria:EBBACT00000016656
EnsemblBacteria:EBBACT00000023286 GeneID:1088076 GeneID:2814798
GeneID:2849014 KEGG:ban:BA_0996 KEGG:bar:GBAA_0996 KEGG:bat:BAS0932
HOGENOM:HOG000084747 OMA:TNNVFQE ProtClustDB:CLSK916050
BioCyc:BANT260799:GJAJ-1010-MONOMER
BioCyc:BANT261594:GJ7F-1055-MONOMER InterPro:IPR007891 Pfam:PF05227
Uniprot:Q81U88
Length = 896
Score = 137 (53.3 bits), Expect = 4.8e-07, P = 4.8e-07
Identities = 33/120 (27%), Positives = 61/120 (50%)
Query: 28 EEVHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDL 87
+E ++ VDD + ++ L + +G L+ L + + N +DL
Sbjct: 774 QEKTIMIVDDDHRNIFALQNALKKQHANIITAQNGLECLEIL----KNNTN------IDL 823
Query: 88 IITDYCMPGMTGYELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVKL 147
I+ D MP M GYE ++ I+ + L EIP++ ++++ + ++CL GA D+I KP+ L
Sbjct: 824 ILMDIMMPNMDGYETMEHIRMNLGLHEIPIIALTAKAMPNDKEKCLSAGASDYISKPLNL 883
>TIGR_CMR|CHY_1125 [details] [associations]
symbol:CHY_1125 "response regulator" species:246194
"Carboxydothermus hydrogenoformans Z-2901" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
InterPro:IPR001789 InterPro:IPR005471 Pfam:PF00072 Pfam:PF09339
PROSITE:PS50110 SMART:SM00448 GO:GO:0006355 GO:GO:0035556
GO:GO:0003677 EMBL:CP000141 GenomeReviews:CP000141_GR
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005622 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG0745
RefSeq:YP_359971.1 ProteinModelPortal:Q3AD13 STRING:Q3AD13
GeneID:3727659 KEGG:chy:CHY_1125 PATRIC:21275390
HOGENOM:HOG000131195 OMA:RNEYLWI ProtClustDB:CLSK289825
BioCyc:CHYD246194:GJCN-1124-MONOMER Uniprot:Q3AD13
Length = 205
Score = 127 (49.8 bits), Expect = 5.7e-07, P = 5.7e-07
Identities = 33/124 (26%), Positives = 67/124 (54%)
Query: 66 LQFLGLDEEQSINGFDGL------KVDLIITDYCMPGMTGYELLKKIKDSSALREIPVVI 119
+ F+G + ++ NG G+ K D+++ DY MP + G + +++I++ + +P+++
Sbjct: 20 IAFMGWEAIKAENGAIGIEKFVREKPDMVLVDYHMPALDGLDTVERIREID--QGVPIIV 77
Query: 120 MSSENILARIDRCLEDGAEDFIVKPVKLSD-VKRIKDYLTR-DVNLGNE--------GRG 169
++ + D+ LE GA DF +KP+K D + R+K + ++N E +G
Sbjct: 78 LTVDERQQIADKFLEVGASDFALKPIKAPDLIARLKVHARMIEINRSQEKKDQDGFLAKG 137
Query: 170 INKR 173
INK+
Sbjct: 138 INKK 141
>UNIPROTKB|P0AE67 [details] [associations]
symbol:cheY species:83333 "Escherichia coli K-12"
[GO:0006473 "protein acetylation" evidence=IDA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0000156 "phosphorelay response regulator activity"
evidence=IEA] [GO:0035556 "intracellular signal transduction"
evidence=IEA] [GO:0060286 "flagellar cell motility" evidence=TAS]
[GO:0006935 "chemotaxis" evidence=IEA;IMP;TAS] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0000287 "magnesium ion binding"
evidence=IMP] [GO:0000160 "phosphorelay signal transduction system"
evidence=IEA;IDA] InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110
SMART:SM00448 GO:GO:0005737 GO:GO:0006355 GO:GO:0035556
GO:GO:0000287 EMBL:U00096 EMBL:AP009048 GenomeReviews:AP009048_GR
GenomeReviews:U00096_GR GO:GO:0006935 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG0784 GO:GO:0000160
PDB:1BDJ PDBsum:1BDJ HOGENOM:HOG000034820 GO:GO:0006473
GO:GO:0060286 PDB:1A0O PDB:1EAY PDB:1FFG PDB:1FFS PDB:1FFW PDB:2LP4
PDBsum:1A0O PDBsum:1EAY PDBsum:1FFG PDBsum:1FFS PDBsum:1FFW
PDBsum:2LP4 EMBL:M13463 EMBL:K02175 PIR:E25195 RefSeq:NP_416396.1
RefSeq:YP_490144.1 PDB:1AB5 PDB:1AB6 PDB:1C4W PDB:1CEY PDB:1CHN
PDB:1CYE PDB:1D4Z PDB:1DJM PDB:1E6K PDB:1E6L PDB:1E6M PDB:1EHC
PDB:1F4V PDB:1FQW PDB:1HEY PDB:1JBE PDB:1KMI PDB:1MIH PDB:1U8T
PDB:1UDR PDB:1VLZ PDB:1YMU PDB:1YMV PDB:1ZDM PDB:2B1J PDB:2ID7
PDB:2ID9 PDB:2IDM PDB:3CHY PDB:3F7N PDB:3FFT PDB:3FFW PDB:3FFX
PDB:3FGZ PDB:3MYY PDB:3OLV PDB:3OLW PDB:3OLX PDB:3OLY PDB:3OO0
PDB:3OO1 PDB:3RVJ PDB:3RVK PDB:3RVL PDB:3RVM PDB:3RVN PDB:3RVO
PDB:3RVP PDB:3RVQ PDB:3RVR PDB:3RVS PDB:5CHY PDB:6CHY PDBsum:1AB5
PDBsum:1AB6 PDBsum:1C4W PDBsum:1CEY PDBsum:1CHN PDBsum:1CYE
PDBsum:1D4Z PDBsum:1DJM PDBsum:1E6K PDBsum:1E6L PDBsum:1E6M
PDBsum:1EHC PDBsum:1F4V PDBsum:1FQW PDBsum:1HEY PDBsum:1JBE
PDBsum:1KMI PDBsum:1MIH PDBsum:1U8T PDBsum:1UDR PDBsum:1VLZ
PDBsum:1YMU PDBsum:1YMV PDBsum:1ZDM PDBsum:2B1J PDBsum:2ID7
PDBsum:2ID9 PDBsum:2IDM PDBsum:3CHY PDBsum:3F7N PDBsum:3FFT
PDBsum:3FFW PDBsum:3FFX PDBsum:3FGZ PDBsum:3MYY PDBsum:3OLV
PDBsum:3OLW PDBsum:3OLX PDBsum:3OLY PDBsum:3OO0 PDBsum:3OO1
PDBsum:3RVJ PDBsum:3RVK PDBsum:3RVL PDBsum:3RVM PDBsum:3RVN
PDBsum:3RVO PDBsum:3RVP PDBsum:3RVQ PDBsum:3RVR PDBsum:3RVS
PDBsum:5CHY PDBsum:6CHY ProteinModelPortal:P0AE67 SMR:P0AE67
DIP:DIP-48237N IntAct:P0AE67 SWISS-2DPAGE:P0AE67 PRIDE:P0AE67
EnsemblBacteria:EBESCT00000000750 EnsemblBacteria:EBESCT00000017790
GeneID:12930559 GeneID:946393 KEGG:ecj:Y75_p1858 KEGG:eco:b1882
PATRIC:32119091 EchoBASE:EB0148 EcoGene:EG10150 KO:K03413
OMA:FGFVISD ProtClustDB:PRK10610 BioCyc:EcoCyc:CHEY-MONOMER
BioCyc:ECOL316407:JW1871-MONOMER EvolutionaryTrace:P0AE67
Genevestigator:P0AE67 Uniprot:P0AE67
Length = 129
Score = 115 (45.5 bits), Expect = 5.8e-07, P = 5.8e-07
Identities = 35/118 (29%), Positives = 57/118 (48%)
Query: 28 EEVHVLAVDDSFVDRKVIERLLT-ISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVD 86
+E+ L VDD R+++ LL + V + G AL L G+
Sbjct: 4 KELKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKL------QAGGYG----- 52
Query: 87 LIITDYCMPGMTGYELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKP 144
+I+D+ MP M G ELLK I+ A+ +PV+++++E I + GA ++VKP
Sbjct: 53 FVISDWNMPNMDGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKP 110
>UNIPROTKB|Q74DM7 [details] [associations]
symbol:cheY34H-1 "Response receiver CheY associated with
MCPs of class 34H" species:243231 "Geobacter sulfurreducens PCA"
[GO:0004871 "signal transducer activity" evidence=ISS] [GO:0006935
"chemotaxis" evidence=ISS] InterPro:IPR001789 Pfam:PF00072
PROSITE:PS50110 SMART:SM00448 GO:GO:0006355 GO:GO:0035556
GO:GO:0005622 GO:GO:0006935 GO:GO:0004871 EMBL:AE017180
GenomeReviews:AE017180_GR GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 HOGENOM:HOG000034820 KO:K03413 HSSP:P08402
RefSeq:NP_952342.1 ProteinModelPortal:Q74DM7 GeneID:2688101
KEGG:gsu:GSU1289 PATRIC:22025351 OMA:FDVTEAC ProtClustDB:CLSK828284
BioCyc:GSUL243231:GH27-1257-MONOMER Uniprot:Q74DM7
Length = 121
Score = 115 (45.5 bits), Expect = 5.8e-07, P = 5.8e-07
Identities = 34/115 (29%), Positives = 57/115 (49%)
Query: 32 VLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITD 91
++ VDDS R+++ L + V G+ AL L G +VD++ITD
Sbjct: 5 IMTVDDSASVRQMVSFTLKQNGYDVVEAVDGKDALAKLA-----------GTRVDMVITD 53
Query: 92 YCMPGMTGYELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVK 146
MP + G L+K ++ + R P+V++++E+ +R GA +IVKP K
Sbjct: 54 LNMPNLDGIGLIKGVRANPTYRFTPIVMLTTESQESRKQEGKAAGATGWIVKPFK 108
>UNIPROTKB|Q9WYT9 [details] [associations]
symbol:TM_0468 "Response regulator" species:243274
"Thermotoga maritima MSB8" [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110
SMART:SM00448 GO:GO:0006355 GO:GO:0035556 GO:GO:0046872
GO:GO:0005622 GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
EMBL:AE000512 GenomeReviews:AE000512_GR KO:K02485 EMBL:AGIJ01000001
PIR:D72374 RefSeq:NP_228278.1 PDB:3DGE PDB:3DGF PDB:3GL9
PDBsum:3DGE PDBsum:3DGF PDBsum:3GL9 IntAct:Q9WYT9 GeneID:897499
KEGG:tma:TM0468 PATRIC:23935833 OMA:WKRIPVI ProtClustDB:CLSK875163
EvolutionaryTrace:Q9WYT9 Uniprot:Q9WYT9
Length = 122
Score = 115 (45.5 bits), Expect = 5.8e-07, P = 5.8e-07
Identities = 37/127 (29%), Positives = 63/127 (49%)
Query: 32 VLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITD 91
VL VDDS V RK++ L +V ++G+ AL+ ++ F DLI+ D
Sbjct: 5 VLLVDDSAVLRKIVSFNLKKEGYEVIEAENGQIALE--------KLSEFTP---DLIVLD 53
Query: 92 YCMPGMTGYELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVKLSD-V 150
MP M G+ +LKK+++ + IPV++++++ L GA + KP S +
Sbjct: 54 IMMPVMDGFTVLKKLQEKEEWKRIPVIVLTAKGGEEDESLALSLGARKVMRKPFSPSQFI 113
Query: 151 KRIKDYL 157
+ +K L
Sbjct: 114 EEVKHLL 120
>TIGR_CMR|GSU_1289 [details] [associations]
symbol:GSU_1289 "chemotaxis protein CheY" species:243231
"Geobacter sulfurreducens PCA" [GO:0004871 "signal transducer
activity" evidence=ISS] [GO:0006935 "chemotaxis" evidence=ISS]
InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110 SMART:SM00448
GO:GO:0006355 GO:GO:0035556 GO:GO:0005622 GO:GO:0006935
GO:GO:0004871 EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034820 KO:K03413
HSSP:P08402 RefSeq:NP_952342.1 ProteinModelPortal:Q74DM7
GeneID:2688101 KEGG:gsu:GSU1289 PATRIC:22025351 OMA:FDVTEAC
ProtClustDB:CLSK828284 BioCyc:GSUL243231:GH27-1257-MONOMER
Uniprot:Q74DM7
Length = 121
Score = 115 (45.5 bits), Expect = 5.8e-07, P = 5.8e-07
Identities = 34/115 (29%), Positives = 57/115 (49%)
Query: 32 VLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITD 91
++ VDDS R+++ L + V G+ AL L G +VD++ITD
Sbjct: 5 IMTVDDSASVRQMVSFTLKQNGYDVVEAVDGKDALAKLA-----------GTRVDMVITD 53
Query: 92 YCMPGMTGYELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVK 146
MP + G L+K ++ + R P+V++++E+ +R GA +IVKP K
Sbjct: 54 LNMPNLDGIGLIKGVRANPTYRFTPIVMLTTESQESRKQEGKAAGATGWIVKPFK 108
>UNIPROTKB|P14376 [details] [associations]
symbol:rcsC "RcsC sensory histidine kinase" species:83333
"Escherichia coli K-12" [GO:0018106 "peptidyl-histidine
phosphorylation" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0000156
"phosphorelay response regulator activity" evidence=IEA]
[GO:0023014 "signal transduction by phosphorylation"
evidence=IEA;IDA] [GO:0035556 "intracellular signal transduction"
evidence=IEA] [GO:0005622 "intracellular" evidence=IEA] [GO:0046777
"protein autophosphorylation" evidence=IMP] [GO:0044010
"single-species biofilm formation" evidence=IMP] [GO:0071470
"cellular response to osmotic stress" evidence=IMP] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0005886 "plasma membrane"
evidence=IEA] [GO:0016021 "integral to membrane" evidence=IEA;RCA]
[GO:0016020 "membrane" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0000160 "phosphorelay signal transduction system"
evidence=IEA;IDA] [GO:0000155 "phosphorelay sensor kinase activity"
evidence=IEA;IDA] InterPro:IPR000014 InterPro:IPR001789
InterPro:IPR003594 InterPro:IPR003661 InterPro:IPR004358
InterPro:IPR009082 InterPro:IPR019017 Pfam:PF00072 Pfam:PF00512
Pfam:PF02518 Pfam:PF09456 PRINTS:PR00344 PROSITE:PS50110
PROSITE:PS50112 PROSITE:PS51426 SMART:SM00091 SMART:SM00387
SMART:SM00388 SMART:SM00448 InterPro:IPR005467 GO:GO:0016021
GO:GO:0005886 GO:GO:0005524 GO:GO:0006355 GO:GO:0035556 EMBL:U00096
EMBL:AP009048 GenomeReviews:U00096_GR GO:GO:0046777 GO:GO:0005622
GO:GO:0071470 GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
GO:GO:0000155 Gene3D:1.10.287.130 Gene3D:3.30.565.10
SUPFAM:SSF55874 SUPFAM:SSF47384 PROSITE:PS50109 eggNOG:COG0642
BRENDA:2.7.13.3 GO:GO:0018106 GO:GO:0044010 EMBL:M28242 EMBL:L11272
PIR:H64991 RefSeq:NP_416722.2 PDB:2AYX PDB:2AYY PDB:2AYZ
PDBsum:2AYX PDBsum:2AYY PDBsum:2AYZ ProteinModelPortal:P14376
SMR:P14376 DIP:DIP-10647N IntAct:P14376 MINT:MINT-1267658
PRIDE:P14376 EnsemblBacteria:EBESCT00000001645
EnsemblBacteria:EBESCT00000017555 GeneID:948993 KEGG:eco:b2218
PATRIC:32119795 EchoBASE:EB0815 EcoGene:EG10822
HOGENOM:HOG000122300 KO:K07677 OMA:HPINRSL ProtClustDB:PRK10841
BioCyc:EcoCyc:RCSC-MONOMER BioCyc:ECOL316407:JW5917-MONOMER
BioCyc:ECOL316407:JW5920-MONOMER EvolutionaryTrace:P14376
Genevestigator:P14376 Uniprot:P14376
Length = 949
Score = 136 (52.9 bits), Expect = 7.2e-07, P = 7.2e-07
Identities = 38/134 (28%), Positives = 73/134 (54%)
Query: 21 DLSPSDTEEVHVLAVDDSFVDRKVI-ERLLTIS-SCKVTAVDSGRRALQFLGLDEEQSIN 78
D + SD +++ +L VDD ++R+++ ++L ++ CK TA D G+D ++N
Sbjct: 816 DKAVSDNDDMMILVVDDHPINRRLLADQLGSLGYQCK-TAND---------GVD---ALN 862
Query: 79 GFDGLKVDLIITDYCMPGMTGYELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAE 138
+D++++D MP M GY L ++I+ +PV+ +++ + RCLE G +
Sbjct: 863 VLSKNHIDIVLSDVNMPNMDGYRLTQRIRQLGLT--LPVIGVTANALAEEKQRCLESGMD 920
Query: 139 DFIVKPVKLSDVKR 152
+ KPV L +K+
Sbjct: 921 SCLSKPVTLDVIKQ 934
>UNIPROTKB|Q9KKK8 [details] [associations]
symbol:VC_A1096 "Chemotaxis protein CheY" species:243277
"Vibrio cholerae O1 biovar El Tor str. N16961" [GO:0004871 "signal
transducer activity" evidence=ISS] [GO:0006935 "chemotaxis"
evidence=ISS] InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110
SMART:SM00448 GO:GO:0006355 GO:GO:0035556 GO:GO:0005622
GO:GO:0006935 GO:GO:0004871 EMBL:AE003853 GenomeReviews:AE003853_GR
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172 OMA:MEEELHV
KO:K03413 HSSP:P06143 PIR:D82380 RefSeq:NP_233476.1
ProteinModelPortal:Q9KKK8 DNASU:2612407 GeneID:2612407
KEGG:vch:VCA1096 PATRIC:20086710 ProtClustDB:CLSK789264
Uniprot:Q9KKK8
Length = 125
Score = 114 (45.2 bits), Expect = 7.5e-07, P = 7.5e-07
Identities = 34/113 (30%), Positives = 57/113 (50%)
Query: 32 VLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITD 91
VLAVDDS R+++ L + +V GR AL + Q + D+II+D
Sbjct: 10 VLAVDDSISIRQMVSHTLQDAGYEVETAADGREALA-----KAQKA------RFDVIISD 58
Query: 92 YCMPGMTGYELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKP 144
MP MTG+E +K ++ S + P++++++E + GA ++VKP
Sbjct: 59 VNMPVMTGFEFVKAVRMQSQYKFTPILMLTTETSPEKKQEGKAVGATGWLVKP 111
>TIGR_CMR|VC_A1096 [details] [associations]
symbol:VC_A1096 "chemotaxis protein CheY" species:686
"Vibrio cholerae O1 biovar El Tor" [GO:0004871 "signal transducer
activity" evidence=ISS] [GO:0006935 "chemotaxis" evidence=ISS]
InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110 SMART:SM00448
GO:GO:0006355 GO:GO:0035556 GO:GO:0005622 GO:GO:0006935
GO:GO:0004871 EMBL:AE003853 GenomeReviews:AE003853_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 OMA:MEEELHV KO:K03413
HSSP:P06143 PIR:D82380 RefSeq:NP_233476.1 ProteinModelPortal:Q9KKK8
DNASU:2612407 GeneID:2612407 KEGG:vch:VCA1096 PATRIC:20086710
ProtClustDB:CLSK789264 Uniprot:Q9KKK8
Length = 125
Score = 114 (45.2 bits), Expect = 7.5e-07, P = 7.5e-07
Identities = 34/113 (30%), Positives = 57/113 (50%)
Query: 32 VLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITD 91
VLAVDDS R+++ L + +V GR AL + Q + D+II+D
Sbjct: 10 VLAVDDSISIRQMVSHTLQDAGYEVETAADGREALA-----KAQKA------RFDVIISD 58
Query: 92 YCMPGMTGYELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKP 144
MP MTG+E +K ++ S + P++++++E + GA ++VKP
Sbjct: 59 VNMPVMTGFEFVKAVRMQSQYKFTPILMLTTETSPEKKQEGKAVGATGWLVKP 111
>UNIPROTKB|Q9KS16 [details] [associations]
symbol:VC_1445 "Sensor histidine kinase/response regulator"
species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0000155 "phosphorelay sensor kinase activity" evidence=ISS]
[GO:0000156 "phosphorelay response regulator activity"
evidence=ISS] [GO:0000160 "phosphorelay signal transduction system"
evidence=ISS] [GO:0023014 "signal transduction by phosphorylation"
evidence=ISS] [GO:0035556 "intracellular signal transduction"
evidence=ISS] InterPro:IPR001789 InterPro:IPR003594
InterPro:IPR003661 InterPro:IPR004358 InterPro:IPR009082
Pfam:PF00072 Pfam:PF00512 Pfam:PF02518 PRINTS:PR00344
PROSITE:PS50110 SMART:SM00387 SMART:SM00388 SMART:SM00448
InterPro:IPR005467 GO:GO:0005524 GO:GO:0016020 GO:GO:0006355
EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0005622 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HSSP:P39928 GO:GO:0000155
Gene3D:1.10.287.130 Gene3D:3.30.565.10 SUPFAM:SSF55874
SUPFAM:SSF47384 PROSITE:PS50109 PIR:E82198 RefSeq:NP_231088.1
ProteinModelPortal:Q9KS16 DNASU:2614077 GeneID:2614077
KEGG:vch:VC1445 PATRIC:20081952 OMA:GTAKDIS ProtClustDB:CLSK874379
Uniprot:Q9KS16
Length = 572
Score = 134 (52.2 bits), Expect = 7.6e-07, P = 7.6e-07
Identities = 35/128 (27%), Positives = 67/128 (52%)
Query: 31 HVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIIT 90
H+L V+D+ ++ VI+ LL VT ++G +A++ L E+ + FD L++
Sbjct: 455 HILVVEDTKTNQMVIQLLLNKLGYDVTIAENGLQAVELL---EKNHV--FD-----LVLM 504
Query: 91 DYCMPGMTGYELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVKLSDV 150
D MP M G K ++D EIP++ +++ + C++ G D ++KP++ D+
Sbjct: 505 DISMPIMDGIAATKILRDKHI--EIPIIALTAHTAGSDKQNCIDAGMNDIVLKPIRSKDI 562
Query: 151 KRI-KDYL 157
+ K +L
Sbjct: 563 MEVVKRFL 570
>TIGR_CMR|VC_1445 [details] [associations]
symbol:VC_1445 "sensor histidine kinase/response regulator"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0000155
"phosphorelay sensor kinase activity" evidence=ISS] [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
InterPro:IPR001789 InterPro:IPR003594 InterPro:IPR003661
InterPro:IPR004358 InterPro:IPR009082 Pfam:PF00072 Pfam:PF00512
Pfam:PF02518 PRINTS:PR00344 PROSITE:PS50110 SMART:SM00387
SMART:SM00388 SMART:SM00448 InterPro:IPR005467 GO:GO:0005524
GO:GO:0016020 GO:GO:0006355 EMBL:AE003852 GenomeReviews:AE003852_GR
GO:GO:0005622 GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
HSSP:P39928 GO:GO:0000155 Gene3D:1.10.287.130 Gene3D:3.30.565.10
SUPFAM:SSF55874 SUPFAM:SSF47384 PROSITE:PS50109 PIR:E82198
RefSeq:NP_231088.1 ProteinModelPortal:Q9KS16 DNASU:2614077
GeneID:2614077 KEGG:vch:VC1445 PATRIC:20081952 OMA:GTAKDIS
ProtClustDB:CLSK874379 Uniprot:Q9KS16
Length = 572
Score = 134 (52.2 bits), Expect = 7.6e-07, P = 7.6e-07
Identities = 35/128 (27%), Positives = 67/128 (52%)
Query: 31 HVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIIT 90
H+L V+D+ ++ VI+ LL VT ++G +A++ L E+ + FD L++
Sbjct: 455 HILVVEDTKTNQMVIQLLLNKLGYDVTIAENGLQAVELL---EKNHV--FD-----LVLM 504
Query: 91 DYCMPGMTGYELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVKLSDV 150
D MP M G K ++D EIP++ +++ + C++ G D ++KP++ D+
Sbjct: 505 DISMPIMDGIAATKILRDKHI--EIPIIALTAHTAGSDKQNCIDAGMNDIVLKPIRSKDI 562
Query: 151 KRI-KDYL 157
+ K +L
Sbjct: 563 MEVVKRFL 570
>UNIPROTKB|Q9KRC3 [details] [associations]
symbol:VC_1719 "DNA-binding response regulator TorR"
species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0000156 "phosphorelay response regulator activity"
evidence=ISS] [GO:0000160 "phosphorelay signal transduction system"
evidence=ISS] [GO:0035556 "intracellular signal transduction"
evidence=ISS] InterPro:IPR001789 InterPro:IPR001867 Pfam:PF00072
Pfam:PF00486 PROSITE:PS50110 SMART:SM00448 SMART:SM00862
GO:GO:0006355 GO:GO:0003677 EMBL:AE003852 GenomeReviews:AE003852_GR
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005622 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HSSP:P08402 KO:K07772
ProtClustDB:PRK10766 PIR:G82164 RefSeq:NP_231355.1
ProteinModelPortal:Q9KRC3 SMR:Q9KRC3 DNASU:2613724 GeneID:2613724
KEGG:vch:VC1719 PATRIC:20082498 OMA:WRISAAR Uniprot:Q9KRC3
Length = 234
Score = 128 (50.1 bits), Expect = 8.0e-07, P = 8.0e-07
Identities = 41/145 (28%), Positives = 74/145 (51%)
Query: 31 HVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIIT 90
HVL V+D V R + +VT +SG + + L L++ +DL++
Sbjct: 4 HVLVVEDDLVTRSKLSGYFQNEGYQVTEAESGAQMREALELND-----------IDLVLL 52
Query: 91 DYCMPGMTGYELLKKIKDSSALREIPVVIMSSENILARIDRC--LEDGAEDFIVKPVKLS 148
D +PG G L ++++ S EI +++++ ID+ LE GA+D++ KPV L
Sbjct: 53 DINLPGEDGLLLTRELRSQS---EIGIILVTGRT--DSIDKIVGLEMGADDYVTKPVDLR 107
Query: 149 DVK-RIKDYLTRDVNLGNEGRGINK 172
+++ R+K+ L R ++L R +K
Sbjct: 108 ELQVRVKNLLWR-ISLAQRERITDK 131
>TIGR_CMR|CHY_0092 [details] [associations]
symbol:CHY_0092 "DNA-binding response regulator"
species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0000156 "phosphorelay response regulator activity"
evidence=ISS] [GO:0000160 "phosphorelay signal transduction system"
evidence=ISS] InterPro:IPR001789 InterPro:IPR001867 Pfam:PF00072
Pfam:PF00486 PROSITE:PS50110 SMART:SM00448 SMART:SM00862
GO:GO:0006355 GO:GO:0035556 GO:GO:0003677 EMBL:CP000141
GenomeReviews:CP000141_GR Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0005622 GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
eggNOG:COG0745 HOGENOM:HOG000034819 RefSeq:YP_358964.1
ProteinModelPortal:Q3AFX0 STRING:Q3AFX0 GeneID:3728314
KEGG:chy:CHY_0092 PATRIC:21273381 OMA:KLANKEF
BioCyc:CHYD246194:GJCN-92-MONOMER Uniprot:Q3AFX0
Length = 234
Score = 128 (50.1 bits), Expect = 8.0e-07, P = 8.0e-07
Identities = 40/123 (32%), Positives = 71/123 (57%)
Query: 45 IERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLK------VDLIITDYCMPGMT 98
++++L I + A + R L+ G E ++NG GLK DLI+ D +PG+
Sbjct: 1 MKKVLIIEDDRSIA-ELERDYLEVAGFLVEIAVNGDQGLKKALEEEYDLILLDLMLPGID 59
Query: 99 GYELLKKIKDSSALREIPVVIMSSENI-LARIDRCLEDGAEDFIVKPVKLSD-VKRIKDY 156
G+E+L+K++ A ++ PV+++S+ + +I R L GA+D+I KP S+ V R+K +
Sbjct: 60 GFEVLRKVR---AEKDTPVLLVSARREDIDKI-RGLGLGADDYITKPFSPSELVARVKAH 115
Query: 157 LTR 159
+ R
Sbjct: 116 IGR 118
>TIGR_CMR|VC_1719 [details] [associations]
symbol:VC_1719 "DNA-binding response regulator TorR"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
InterPro:IPR001789 InterPro:IPR001867 Pfam:PF00072 Pfam:PF00486
PROSITE:PS50110 SMART:SM00448 SMART:SM00862 GO:GO:0006355
GO:GO:0003677 EMBL:AE003852 GenomeReviews:AE003852_GR
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005622 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HSSP:P08402 KO:K07772
ProtClustDB:PRK10766 PIR:G82164 RefSeq:NP_231355.1
ProteinModelPortal:Q9KRC3 SMR:Q9KRC3 DNASU:2613724 GeneID:2613724
KEGG:vch:VC1719 PATRIC:20082498 OMA:WRISAAR Uniprot:Q9KRC3
Length = 234
Score = 128 (50.1 bits), Expect = 8.0e-07, P = 8.0e-07
Identities = 41/145 (28%), Positives = 74/145 (51%)
Query: 31 HVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIIT 90
HVL V+D V R + +VT +SG + + L L++ +DL++
Sbjct: 4 HVLVVEDDLVTRSKLSGYFQNEGYQVTEAESGAQMREALELND-----------IDLVLL 52
Query: 91 DYCMPGMTGYELLKKIKDSSALREIPVVIMSSENILARIDRC--LEDGAEDFIVKPVKLS 148
D +PG G L ++++ S EI +++++ ID+ LE GA+D++ KPV L
Sbjct: 53 DINLPGEDGLLLTRELRSQS---EIGIILVTGRT--DSIDKIVGLEMGADDYVTKPVDLR 107
Query: 149 DVK-RIKDYLTRDVNLGNEGRGINK 172
+++ R+K+ L R ++L R +K
Sbjct: 108 ELQVRVKNLLWR-ISLAQRERITDK 131
>TIGR_CMR|GSU_2046 [details] [associations]
symbol:GSU_2046 "response regulator" species:243231
"Geobacter sulfurreducens PCA" [GO:0000156 "phosphorelay response
regulator activity" evidence=ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=ISS] InterPro:IPR001789 Pfam:PF00072
PROSITE:PS50110 SMART:SM00448 GO:GO:0006355 GO:GO:0035556
GO:GO:0005622 EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 RefSeq:NP_953095.1
ProteinModelPortal:Q74BJ5 GeneID:2687978 KEGG:gsu:GSU2046
PATRIC:22026953 HOGENOM:HOG000129743 OMA:IVWEVVP
ProtClustDB:CLSK828706 BioCyc:GSUL243231:GH27-1956-MONOMER
Uniprot:Q74BJ5
Length = 404
Score = 132 (51.5 bits), Expect = 8.7e-07, P = 8.7e-07
Identities = 37/127 (29%), Positives = 64/127 (50%)
Query: 32 VLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITD 91
+L DDS +KV+ + ++T VD+G AL+ +S + D+++ D
Sbjct: 5 LLLADDSITIQKVVGIIFANEDFELTVVDNGDAALE----KARES-------RPDVMLID 53
Query: 92 YCMPGMTGYELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVKLSD-V 150
MPG GYE+ ++ AL+ P+++M+ DR + GA+DFI KP + V
Sbjct: 54 ALMPGSNGYEVCAAVRQDPALKNTPLLLMTGAFEPFDEDRARQCGADDFISKPFESQQLV 113
Query: 151 KRIKDYL 157
++K+ L
Sbjct: 114 DKVKELL 120
>TIGR_CMR|BA_0571 [details] [associations]
symbol:BA_0571 "DNA-binding response regulator"
species:198094 "Bacillus anthracis str. Ames" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] InterPro:IPR001789 InterPro:IPR001867
InterPro:IPR016032 Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110
SMART:SM00448 SMART:SM00862 GO:GO:0006355 GO:GO:0035556
EMBL:AE016879 EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003677
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0006351 GO:GO:0005622
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172 SUPFAM:SSF46894
HOGENOM:HOG000034815 HSSP:P08402 RefSeq:NP_843105.1
RefSeq:YP_017194.1 RefSeq:YP_026818.1 ProteinModelPortal:Q81YR2
DNASU:1087909 EnsemblBacteria:EBBACT00000010289
EnsemblBacteria:EBBACT00000017976 EnsemblBacteria:EBBACT00000019549
GeneID:1087909 GeneID:2816056 GeneID:2852340 KEGG:ban:BA_0571
KEGG:bar:GBAA_0571 KEGG:bat:BAS0540 OMA:TQQTIRY
ProtClustDB:CLSK915864 BioCyc:BANT260799:GJAJ-600-MONOMER
BioCyc:BANT261594:GJ7F-626-MONOMER Uniprot:Q81YR2
Length = 223
Score = 127 (49.8 bits), Expect = 8.9e-07, P = 8.9e-07
Identities = 33/97 (34%), Positives = 57/97 (58%)
Query: 74 EQSINGFDGLKV------DLIITDYCMPGMTGYELLKKIKDSSALREIPVVIMSSENILA 127
+ ++NG DGL + D I+ D MP M G+E+++KI+D E PV+ +++ + L
Sbjct: 27 DTALNGEDGLFLALQNIYDAILLDVMMPEMDGFEVIQKIRDEKI--ETPVLFLTARDSLE 84
Query: 128 RIDRCLEDGAEDFIVKPVKLSDVK-RIKDYLTRDVNL 163
+ L+ G +D+IVKP + ++K RI+ L R +L
Sbjct: 85 DRVKGLDFGGDDYIVKPFQAPELKARIRALLRRSGSL 121
>UNIPROTKB|Q8EF67 [details] [associations]
symbol:cheY "Chemotaxis signal transduction system response
regulator CheY" species:211586 "Shewanella oneidensis MR-1"
[GO:0004871 "signal transducer activity" evidence=ISS] [GO:0006935
"chemotaxis" evidence=ISS] InterPro:IPR001789 Pfam:PF00072
PROSITE:PS50110 SMART:SM00448 GO:GO:0006355 GO:GO:0035556
GO:GO:0005622 GO:GO:0006935 GO:GO:0004871 EMBL:AE014299
GenomeReviews:AE014299_GR GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 HOGENOM:HOG000034820 KO:K03413 HSSP:P06143
OMA:FDVTEAC RefSeq:NP_717723.1 ProteinModelPortal:Q8EF67
GeneID:1169863 KEGG:son:SO_2120 PATRIC:23523858
ProtClustDB:CLSK906601 Uniprot:Q8EF67
Length = 121
Score = 113 (44.8 bits), Expect = 9.9e-07, P = 9.9e-07
Identities = 37/116 (31%), Positives = 58/116 (50%)
Query: 32 VLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITD 91
+L VDDS R+++E L ++ +VT GR AL L Q + D I+TD
Sbjct: 5 ILIVDDSAAIRQMVEATLKSANYQVTLAKDGREALD---LCSSQ--------RFDFILTD 53
Query: 92 YCMPGMTGYELLKKIKDSSALREIPVVIMSSENILARIDRCLED---GAEDFIVKP 144
MP M G L+K ++ SA P++++++E A D + GA ++VKP
Sbjct: 54 QNMPRMDGLTLIKSLRGMSAFMRTPIIMLTTE---AGDDMKAQGKAVGATGWMVKP 106
>TIGR_CMR|SO_2120 [details] [associations]
symbol:SO_2120 "chemotaxis protein CheY" species:211586
"Shewanella oneidensis MR-1" [GO:0004871 "signal transducer
activity" evidence=ISS] [GO:0006935 "chemotaxis" evidence=ISS]
InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110 SMART:SM00448
GO:GO:0006355 GO:GO:0035556 GO:GO:0005622 GO:GO:0006935
GO:GO:0004871 EMBL:AE014299 GenomeReviews:AE014299_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034820 KO:K03413
HSSP:P06143 OMA:FDVTEAC RefSeq:NP_717723.1
ProteinModelPortal:Q8EF67 GeneID:1169863 KEGG:son:SO_2120
PATRIC:23523858 ProtClustDB:CLSK906601 Uniprot:Q8EF67
Length = 121
Score = 113 (44.8 bits), Expect = 9.9e-07, P = 9.9e-07
Identities = 37/116 (31%), Positives = 58/116 (50%)
Query: 32 VLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITD 91
+L VDDS R+++E L ++ +VT GR AL L Q + D I+TD
Sbjct: 5 ILIVDDSAAIRQMVEATLKSANYQVTLAKDGREALD---LCSSQ--------RFDFILTD 53
Query: 92 YCMPGMTGYELLKKIKDSSALREIPVVIMSSENILARIDRCLED---GAEDFIVKP 144
MP M G L+K ++ SA P++++++E A D + GA ++VKP
Sbjct: 54 QNMPRMDGLTLIKSLRGMSAFMRTPIIMLTTE---AGDDMKAQGKAVGATGWMVKP 106
>UNIPROTKB|P0AEV1 [details] [associations]
symbol:rssB "regulator of RpoS" species:83333 "Escherichia
coli K-12" [GO:0000156 "phosphorelay response regulator activity"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0035556 "intracellular signal
transduction" evidence=IEA] [GO:0005622 "intracellular"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0000160
"phosphorelay signal transduction system" evidence=IEA] [GO:0006508
"proteolysis" evidence=EXP] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] InterPro:IPR001789 Pfam:PF00072
PROSITE:PS50110 SMART:SM00448 GO:GO:0006355 GO:GO:0035556
EMBL:U00096 EMBL:AP009048 GenomeReviews:AP009048_GR
GenomeReviews:U00096_GR GO:GO:0003677 GO:GO:0006508 GO:GO:0006351
GO:GO:0005622 GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
eggNOG:COG0784 EMBL:X66003 EMBL:M64675 PIR:A36871
RefSeq:NP_415751.1 RefSeq:YP_489503.1 PDB:3EOD PDBsum:3EOD
ProteinModelPortal:P0AEV1 SMR:P0AEV1 IntAct:P0AEV1 PRIDE:P0AEV1
EnsemblBacteria:EBESCT00000002730 EnsemblBacteria:EBESCT00000002731
EnsemblBacteria:EBESCT00000016710 GeneID:12932932 GeneID:945855
KEGG:ecj:Y75_p1208 KEGG:eco:b1235 PATRIC:32117726 EchoBASE:EB2042
EcoGene:EG12121 HOGENOM:HOG000119811 KO:K02485 OMA:MICDLAM
ProtClustDB:PRK10693 BioCyc:EcoCyc:EG12121-MONOMER
BioCyc:ECOL316407:JW1223-MONOMER EvolutionaryTrace:P0AEV1
Genevestigator:P0AEV1 Uniprot:P0AEV1
Length = 337
Score = 129 (50.5 bits), Expect = 1.6e-06, P = 1.6e-06
Identities = 40/125 (32%), Positives = 67/125 (53%)
Query: 32 VLAVDDSFVDRKVIERLLT-ISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIIT 90
+L V+D V R +++ + + + V A D G AL+ LG G DL+I
Sbjct: 10 ILIVEDEQVFRSLLDSWFSSLGATTVLAAD-GVDALELLG-----------GFTPDLMIC 57
Query: 91 DYCMPGMTGYELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVKLSDV 150
D MP M G +LL+ I++ + PV+++S+ +A I + L G ED ++KPVK D+
Sbjct: 58 DIAMPRMNGLKLLEHIRNRGD--QTPVLVISATENMADIAKALRLGVEDVLLKPVK--DL 113
Query: 151 KRIKD 155
R+++
Sbjct: 114 NRLRE 118
>CGD|CAL0003344 [details] [associations]
symbol:SLN1 species:5476 "Candida albicans" [GO:0007234
"osmosensory signaling via phosphorelay pathway" evidence=IGI]
[GO:0004673 "protein histidine kinase activity" evidence=ISS;IDA]
[GO:0005887 "integral to plasma membrane" evidence=IEA] [GO:0097308
"cellular response to farnesol" evidence=IMP] [GO:0036180
"filamentous growth of a population of unicellular organisms in
response to biotic stimulus" evidence=IMP] [GO:1900445 "positive
regulation of filamentous growth of a population of unicellular
organisms in response to biotic stimulus" evidence=IMP] [GO:0046777
"protein autophosphorylation" evidence=IEA] [GO:0018106
"peptidyl-histidine phosphorylation" evidence=IEA] [GO:0006469
"negative regulation of protein kinase activity" evidence=IEA]
[GO:0005034 "osmosensor activity" evidence=IEA] [GO:0009927
"histidine phosphotransfer kinase activity" evidence=IEA]
InterPro:IPR001789 InterPro:IPR003594 InterPro:IPR003660
InterPro:IPR003661 InterPro:IPR004358 InterPro:IPR009082
Pfam:PF00072 Pfam:PF00512 Pfam:PF02518 PRINTS:PR00344
PROSITE:PS50110 SMART:SM00304 SMART:SM00387 SMART:SM00388
SMART:SM00448 InterPro:IPR005467 CGD:CAL0003344 GO:GO:0016021
GO:GO:0005524 GO:GO:0036180 GO:GO:1900445 GO:GO:0006355
GO:GO:0035556 GO:GO:0005622 GO:GO:0023014 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 GO:GO:0000155
Gene3D:1.10.287.130 Gene3D:3.30.565.10 SUPFAM:SSF55874
SUPFAM:SSF47384 PROSITE:PS50109 GO:GO:0004673 EMBL:AACQ01000049
EMBL:AACQ01000048 GO:GO:0007234 GO:GO:0097308 KO:K11231
RefSeq:XP_717880.1 RefSeq:XP_717946.1 ProteinModelPortal:Q5A872
SMR:Q5A872 STRING:Q5A872 GeneID:3640422 GeneID:3640485
KEGG:cal:CaO19.10766 KEGG:cal:CaO19.3256 Uniprot:Q5A872
Length = 1373
Score = 135 (52.6 bits), Expect = 1.7e-06, P = 1.7e-06
Identities = 35/138 (25%), Positives = 72/138 (52%)
Query: 26 DTEEVHVLAVDDSFVDRKVIERLLTISSC-KVTAVDSGRRALQFLGLDEEQSINGFDGLK 84
D + VL +D+ V+++VI R+L +T +G +A+ F+ ++SI +
Sbjct: 1240 DISHLRVLVAEDNSVNQEVISRMLKQEGITNLTMACNGAKAIDFV----KESIENNENF- 1294
Query: 85 VDLIITDYCMPGMTGYELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKP 144
DLI D MP + G + K I+ + + P++ +++ + + CL G FI KP
Sbjct: 1295 -DLIFMDVQMPEVDGLKATKMIRKNLQYNK-PIIALTAFADESNVKECLNSGMSGFITKP 1352
Query: 145 VKLSDVKRIK-DYLTRDV 161
+ +++K++ ++L+ +V
Sbjct: 1353 ISKTNIKKVLVEFLSNEV 1370
>UNIPROTKB|Q5A872 [details] [associations]
symbol:SLN1 "Potential response regulator protein"
species:237561 "Candida albicans SC5314" [GO:0004673 "protein
histidine kinase activity" evidence=ISS;IDA] [GO:0007234
"osmosensory signaling via phosphorelay pathway" evidence=IGI]
[GO:0036180 "filamentous growth of a population of unicellular
organisms in response to biotic stimulus" evidence=IMP] [GO:0097308
"cellular response to farnesol" evidence=IMP] [GO:1900445 "positive
regulation of filamentous growth of a population of unicellular
organisms in response to biotic stimulus" evidence=IMP]
InterPro:IPR001789 InterPro:IPR003594 InterPro:IPR003660
InterPro:IPR003661 InterPro:IPR004358 InterPro:IPR009082
Pfam:PF00072 Pfam:PF00512 Pfam:PF02518 PRINTS:PR00344
PROSITE:PS50110 SMART:SM00304 SMART:SM00387 SMART:SM00388
SMART:SM00448 InterPro:IPR005467 CGD:CAL0003344 GO:GO:0016021
GO:GO:0005524 GO:GO:0036180 GO:GO:1900445 GO:GO:0006355
GO:GO:0035556 GO:GO:0005622 GO:GO:0023014 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 GO:GO:0000155
Gene3D:1.10.287.130 Gene3D:3.30.565.10 SUPFAM:SSF55874
SUPFAM:SSF47384 PROSITE:PS50109 GO:GO:0004673 EMBL:AACQ01000049
EMBL:AACQ01000048 GO:GO:0007234 GO:GO:0097308 KO:K11231
RefSeq:XP_717880.1 RefSeq:XP_717946.1 ProteinModelPortal:Q5A872
SMR:Q5A872 STRING:Q5A872 GeneID:3640422 GeneID:3640485
KEGG:cal:CaO19.10766 KEGG:cal:CaO19.3256 Uniprot:Q5A872
Length = 1373
Score = 135 (52.6 bits), Expect = 1.7e-06, P = 1.7e-06
Identities = 35/138 (25%), Positives = 72/138 (52%)
Query: 26 DTEEVHVLAVDDSFVDRKVIERLLTISSC-KVTAVDSGRRALQFLGLDEEQSINGFDGLK 84
D + VL +D+ V+++VI R+L +T +G +A+ F+ ++SI +
Sbjct: 1240 DISHLRVLVAEDNSVNQEVISRMLKQEGITNLTMACNGAKAIDFV----KESIENNENF- 1294
Query: 85 VDLIITDYCMPGMTGYELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKP 144
DLI D MP + G + K I+ + + P++ +++ + + CL G FI KP
Sbjct: 1295 -DLIFMDVQMPEVDGLKATKMIRKNLQYNK-PIIALTAFADESNVKECLNSGMSGFITKP 1352
Query: 145 VKLSDVKRIK-DYLTRDV 161
+ +++K++ ++L+ +V
Sbjct: 1353 ISKTNIKKVLVEFLSNEV 1370
>UNIPROTKB|Q3ADA5 [details] [associations]
symbol:cheY2 "Chemotaxis protein CheY" species:246194
"Carboxydothermus hydrogenoformans Z-2901" [GO:0006935 "chemotaxis"
evidence=ISS] InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110
SMART:SM00448 GO:GO:0006355 GO:GO:0035556 EMBL:CP000141
GenomeReviews:CP000141_GR GO:GO:0005622 GO:GO:0006935 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG0784
HOGENOM:HOG000034820 KO:K03413 RefSeq:YP_359879.1
ProteinModelPortal:Q3ADA5 STRING:Q3ADA5 GeneID:3726250
KEGG:chy:CHY_1032 PATRIC:21275199 OMA:AGANFYL
BioCyc:CHYD246194:GJCN-1031-MONOMER Uniprot:Q3ADA5
Length = 118
Score = 111 (44.1 bits), Expect = 1.7e-06, P = 1.7e-06
Identities = 36/114 (31%), Positives = 59/114 (51%)
Query: 32 VLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITD 91
VL VDDSF R+ + + S +V +G AL E+ +NG + DL+ D
Sbjct: 3 VLIVDDSFTVRQYFKEIFQGFSWEVEEAVNGLEAL-------EKVLNG----EFDLMTVD 51
Query: 92 YCMPGMTGYELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPV 145
MP M GY + K+++ +PV+++S+E+ + L+ GA ++VKPV
Sbjct: 52 VNMPKMDGYTFVYKVREMGV--SLPVILISTESKEHDKLKGLQAGATLYLVKPV 103
>UNIPROTKB|Q747K4 [details] [associations]
symbol:GSU3261 "Response regulator, putative"
species:243231 "Geobacter sulfurreducens PCA" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0035556 "intracellular signal transduction" evidence=ISS]
InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110 SMART:SM00448
GO:GO:0006355 GO:GO:0005622 EMBL:AE017180 GenomeReviews:AE017180_GR
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
HOGENOM:HOG000034820 HSSP:P10957 RefSeq:NP_954302.1
ProteinModelPortal:Q747K4 GeneID:2686384 KEGG:gsu:GSU3261
PATRIC:22029363 OMA:KLPRIDG ProtClustDB:CLSK743192
BioCyc:GSUL243231:GH27-3237-MONOMER Uniprot:Q747K4
Length = 150
Score = 111 (44.1 bits), Expect = 1.7e-06, P = 1.7e-06
Identities = 41/143 (28%), Positives = 66/143 (46%)
Query: 32 VLAVDDSFVDRKVIERLLTISSCK--VTAVDSGRRALQFLGLDEEQSINGFDGLKVDLII 89
+L V+D+ D + R L + VT V G AL FL S + L++
Sbjct: 6 ILLVEDNPDDEVLTLRALGKHAITPDVTVVRDGVEALDFLFGTGSYSDRDLS-IMPKLVL 64
Query: 90 TDYCMPGMTGYELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPV---K 146
D +P + G E+L++++ R +PVV+ +S N I C GA +I KPV +
Sbjct: 65 LDLKLPKVDGLEVLRRLRADQRTRLLPVVVFTSSNEEQDILECHNLGANSYIRKPVDFNQ 124
Query: 147 LSDVKRIKDYLTRDVNLGNEGRG 169
LS+ R+ ++NL + G
Sbjct: 125 LSEALRLIGTYWLNLNLTPKSAG 147
>TIGR_CMR|BA_1660 [details] [associations]
symbol:BA_1660 "chemotaxis response regulator"
species:198094 "Bacillus anthracis str. Ames" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0006935 "chemotaxis" evidence=ISS] InterPro:IPR001789
Pfam:PF00072 PROSITE:PS50110 SMART:SM00448 GO:GO:0006355
GO:GO:0035556 EMBL:AE016879 EMBL:AE017334 EMBL:AE017225
GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0005622 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034820 KO:K03413
OMA:PFQAPKV RefSeq:NP_844107.1 RefSeq:YP_018295.1
RefSeq:YP_027808.1 HSSP:Q56312 ProteinModelPortal:Q81SI8 SMR:Q81SI8
DNASU:1083740 EnsemblBacteria:EBBACT00000009828
EnsemblBacteria:EBBACT00000015597 EnsemblBacteria:EBBACT00000020958
GeneID:1083740 GeneID:2817294 GeneID:2851539 KEGG:ban:BA_1660
KEGG:bar:GBAA_1660 KEGG:bat:BAS1541 ProtClustDB:CLSK916318
BioCyc:BANT260799:GJAJ-1613-MONOMER
BioCyc:BANT261594:GJ7F-1681-MONOMER Uniprot:Q81SI8
Length = 122
Score = 111 (44.1 bits), Expect = 1.7e-06, P = 1.7e-06
Identities = 42/133 (31%), Positives = 68/133 (51%)
Query: 32 VLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITD 91
+L VDD+ R +I+ LL S+ + + ++ +I + L+ D++ D
Sbjct: 5 ILVVDDAMFMRTMIKNLLK-SNSEFEVIGEAENGVE--------AIQKYKELQPDIVTLD 55
Query: 92 YCMPGMTGYELLKKI-K-DSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVKLSD 149
MP M G E LK+I K D+SA VVI S+ + ++ GA+DFIVKP + +D
Sbjct: 56 ITMPEMDGLEALKEIIKIDASA----KVVICSAMGQQGMVLDAIKGGAKDFIVKPFQ-AD 110
Query: 150 VKRIKDYLTRDVN 162
R+ + LT+ N
Sbjct: 111 --RVIEALTKVAN 121
>TIGR_CMR|CHY_1032 [details] [associations]
symbol:CHY_1032 "chemotaxis protein CheY" species:246194
"Carboxydothermus hydrogenoformans Z-2901" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0006935 "chemotaxis" evidence=ISS] InterPro:IPR001789
Pfam:PF00072 PROSITE:PS50110 SMART:SM00448 GO:GO:0006355
GO:GO:0035556 EMBL:CP000141 GenomeReviews:CP000141_GR GO:GO:0005622
GO:GO:0006935 GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
eggNOG:COG0784 HOGENOM:HOG000034820 KO:K03413 RefSeq:YP_359879.1
ProteinModelPortal:Q3ADA5 STRING:Q3ADA5 GeneID:3726250
KEGG:chy:CHY_1032 PATRIC:21275199 OMA:AGANFYL
BioCyc:CHYD246194:GJCN-1031-MONOMER Uniprot:Q3ADA5
Length = 118
Score = 111 (44.1 bits), Expect = 1.7e-06, P = 1.7e-06
Identities = 36/114 (31%), Positives = 59/114 (51%)
Query: 32 VLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITD 91
VL VDDSF R+ + + S +V +G AL E+ +NG + DL+ D
Sbjct: 3 VLIVDDSFTVRQYFKEIFQGFSWEVEEAVNGLEAL-------EKVLNG----EFDLMTVD 51
Query: 92 YCMPGMTGYELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPV 145
MP M GY + K+++ +PV+++S+E+ + L+ GA ++VKPV
Sbjct: 52 VNMPKMDGYTFVYKVREMGV--SLPVILISTESKEHDKLKGLQAGATLYLVKPV 103
>TIGR_CMR|GSU_3261 [details] [associations]
symbol:GSU_3261 "response regulator" species:243231
"Geobacter sulfurreducens PCA" [GO:0000156 "phosphorelay response
regulator activity" evidence=ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=ISS] InterPro:IPR001789 Pfam:PF00072
PROSITE:PS50110 SMART:SM00448 GO:GO:0006355 GO:GO:0005622
EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034820 HSSP:P10957
RefSeq:NP_954302.1 ProteinModelPortal:Q747K4 GeneID:2686384
KEGG:gsu:GSU3261 PATRIC:22029363 OMA:KLPRIDG ProtClustDB:CLSK743192
BioCyc:GSUL243231:GH27-3237-MONOMER Uniprot:Q747K4
Length = 150
Score = 111 (44.1 bits), Expect = 1.7e-06, P = 1.7e-06
Identities = 41/143 (28%), Positives = 66/143 (46%)
Query: 32 VLAVDDSFVDRKVIERLLTISSCK--VTAVDSGRRALQFLGLDEEQSINGFDGLKVDLII 89
+L V+D+ D + R L + VT V G AL FL S + L++
Sbjct: 6 ILLVEDNPDDEVLTLRALGKHAITPDVTVVRDGVEALDFLFGTGSYSDRDLS-IMPKLVL 64
Query: 90 TDYCMPGMTGYELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPV---K 146
D +P + G E+L++++ R +PVV+ +S N I C GA +I KPV +
Sbjct: 65 LDLKLPKVDGLEVLRRLRADQRTRLLPVVVFTSSNEEQDILECHNLGANSYIRKPVDFNQ 124
Query: 147 LSDVKRIKDYLTRDVNLGNEGRG 169
LS+ R+ ++NL + G
Sbjct: 125 LSEALRLIGTYWLNLNLTPKSAG 147
>TIGR_CMR|GSU_2946 [details] [associations]
symbol:GSU_2946 "DNA-binding heavy metal response
regulator" species:243231 "Geobacter sulfurreducens PCA"
[GO:0000156 "phosphorelay response regulator activity"
evidence=ISS] [GO:0000160 "phosphorelay signal transduction system"
evidence=ISS] [GO:0003677 "DNA binding" evidence=ISS] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=ISS]
InterPro:IPR001789 InterPro:IPR001867 InterPro:IPR006291
Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110 SMART:SM00448
SMART:SM00862 GO:GO:0006355 GO:GO:0035556 GO:GO:0003677
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005622 EMBL:AE017180
GenomeReviews:AE017180_GR GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 HOGENOM:HOG000034815 KO:K07665 TIGRFAMs:TIGR01387
HSSP:Q9WYN0 RefSeq:NP_953988.1 ProteinModelPortal:Q748Q5
GeneID:2688389 KEGG:gsu:GSU2946 PATRIC:22028753 OMA:GYMLEIP
ProtClustDB:CLSK743174 BioCyc:GSUL243231:GH27-2897-MONOMER
Uniprot:Q748Q5
Length = 223
Score = 125 (49.1 bits), Expect = 1.7e-06, P = 1.7e-06
Identities = 32/97 (32%), Positives = 56/97 (57%)
Query: 70 GLDEEQSINGFDGLKV------DLIITDYCMPGMTGYELLKKIKDSSALREIPVVIMSSE 123
G + + +G DGL + DLII D +PG G+E+L++++ + E+PV+ +S+
Sbjct: 24 GFTADTAASGDDGLHLARTENYDLIILDIMLPGRDGWEVLEELRKEGS--EVPVIYLSAR 81
Query: 124 NILARIDRCLEDGAEDFIVKPVKLSDV-KRIKDYLTR 159
+ + R LE GA+D++VKP S++ R + L R
Sbjct: 82 DAVHDRVRGLELGADDYLVKPFAFSELLARARTILRR 118
>TIGR_CMR|SO_4003 [details] [associations]
symbol:SO_4003 "response regulator" species:211586
"Shewanella oneidensis MR-1" [GO:0000156 "phosphorelay response
regulator activity" evidence=ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=ISS] InterPro:IPR001789
InterPro:IPR003607 InterPro:IPR006674 Pfam:PF00072 PROSITE:PS50110
SMART:SM00448 SMART:SM00471 GO:GO:0006355 GO:GO:0035556
GO:GO:0046872 GO:GO:0008152 GO:GO:0005622 EMBL:AE014299
GenomeReviews:AE014299_GR GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 GO:GO:0008081 Gene3D:1.10.3210.10 HSSP:Q9A5I4
HOGENOM:HOG000266481 KO:K07814 RefSeq:NP_719533.1
ProteinModelPortal:Q8EAA5 GeneID:1171631 KEGG:son:SO_4003
PATRIC:23527676 OMA:FVTAKTD ProtClustDB:CLSK577304 Uniprot:Q8EAA5
Length = 357
Score = 129 (50.5 bits), Expect = 1.8e-06, P = 1.8e-06
Identities = 38/128 (29%), Positives = 66/128 (51%)
Query: 32 VLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITD 91
VL VDDS + +++ LL+ + A SG +AL ++ DLI+ D
Sbjct: 10 VLVVDDSADNIQILHGLLS-DKYSIRAATSGAKALALAAIEPMP----------DLILLD 58
Query: 92 YCMPGMTGYELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVKLSDVK 151
MP M G++ ++K + R IP++ ++++ + E GA D+I KPVK + ++
Sbjct: 59 VMMPEMDGFQTCIRLKHNPLTRHIPIIFVTAKTDIVDERTGFELGAVDYISKPVKPAILE 118
Query: 152 -RIKDYLT 158
R+K +LT
Sbjct: 119 ARVKTHLT 126
>TIGR_CMR|DET_0232 [details] [associations]
symbol:DET_0232 "DNA-binding response regulator"
species:243164 "Dehalococcoides ethenogenes 195" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=ISS] InterPro:IPR001789 InterPro:IPR001867 Pfam:PF00072
Pfam:PF00486 PROSITE:PS50110 SMART:SM00448 SMART:SM00862
GO:GO:0006355 GO:GO:0035556 GO:GO:0003677 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0005622 EMBL:CP000027
GenomeReviews:CP000027_GR GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 eggNOG:COG0745 HOGENOM:HOG000034819
RefSeq:YP_180980.1 ProteinModelPortal:Q3Z9W9 STRING:Q3Z9W9
GeneID:3230435 KEGG:det:DET0232 PATRIC:21607535 OMA:SIRELWI
ProtClustDB:CLSK741610 BioCyc:DETH243164:GJNF-232-MONOMER
Uniprot:Q3Z9W9
Length = 227
Score = 125 (49.1 bits), Expect = 1.9e-06, P = 1.9e-06
Identities = 39/132 (29%), Positives = 74/132 (56%)
Query: 32 VLAVDDS-FVDRKVIERLLTIS--SCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLI 88
+L DD+ VD VI + IS + +V + SGR+ G++ +S+N D+I
Sbjct: 4 LLIEDDAEIVD--VISTIFQISCPNSRVISASSGRK-----GIESVESVNP------DII 50
Query: 89 ITDYCMPGMTGYELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVKLS 148
+ D +P M G+++LK+I++ S ++P++I++ + + R L GA D+I KP +
Sbjct: 51 LLDLGLPDMNGFDVLKQIRNFS---DVPIIILTVRGDESDVVRGLTLGANDYITKPFRQM 107
Query: 149 DV-KRIKDYLTR 159
++ R++ LT+
Sbjct: 108 ELLARVRRLLTK 119
>UNIPROTKB|P0A5Z4 [details] [associations]
symbol:mtrA "DNA-binding response regulator MtrA"
species:1773 "Mycobacterium tuberculosis" [GO:0005886 "plasma
membrane" evidence=IDA] [GO:0006468 "protein phosphorylation"
evidence=IDA] [GO:0044117 "growth of symbiont in host"
evidence=IMP] [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=IDA] InterPro:IPR001789 InterPro:IPR001867
Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110 SMART:SM00448
SMART:SM00862 GO:GO:0005886 GO:GO:0045893 EMBL:AE000516
GenomeReviews:AE000516_GR GenomeReviews:AL123456_GR GO:GO:0035556
GO:GO:0003677 GO:GO:0006468 GO:GO:0044117 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0006351 GO:GO:0005622 EMBL:BX842582
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG0745
HOGENOM:HOG000034819 EMBL:U01971 PIR:H70592 RefSeq:NP_217763.1
RefSeq:NP_337872.1 RefSeq:YP_006516722.1 PDB:2GWR PDB:3NHZ
PDBsum:2GWR PDBsum:3NHZ ProteinModelPortal:P0A5Z4 SMR:P0A5Z4
EnsemblBacteria:EBMYCT00000000173 EnsemblBacteria:EBMYCT00000070796
GeneID:13318068 GeneID:888743 GeneID:923067 KEGG:mtc:MT3344
KEGG:mtu:Rv3246c KEGG:mtv:RVBD_3246c PATRIC:18129108
TubercuList:Rv3246c KO:K07670 OMA:GFEPSFV ProtClustDB:CLSK872159
EvolutionaryTrace:P0A5Z4 Uniprot:P0A5Z4
Length = 228
Score = 125 (49.1 bits), Expect = 1.9e-06, P = 1.9e-06
Identities = 39/136 (28%), Positives = 71/136 (52%)
Query: 26 DTEEVHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKV 85
DT +L VDD D + E +LTI + D+ +G D Q++ L+
Sbjct: 2 DTMRQRILVVDD---DASLAE-MLTIV-LRGEGFDTA-----VIG-DGTQALTAVRELRP 50
Query: 86 DLIITDYCMPGMTGYELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPV 145
DL++ D +PGM G ++ + ++ S +P+V+++++ + LE GA+D+I+KP
Sbjct: 51 DLVLLDLMLPGMNGIDVCRVLRADSG---VPIVMLTAKTDTVDVVLGLESGADDYIMKPF 107
Query: 146 KLSD-VKRIKDYLTRD 160
K + V R++ L R+
Sbjct: 108 KPKELVARVRARLRRN 123
>TIGR_CMR|SO_3196 [details] [associations]
symbol:SO_3196 "response regulator" species:211586
"Shewanella oneidensis MR-1" [GO:0000156 "phosphorelay response
regulator activity" evidence=ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=ISS] InterPro:IPR001789 Pfam:PF00072
PROSITE:PS50110 SMART:SM00448 GO:GO:0006355 GO:GO:0035556
GO:GO:0005622 EMBL:AE014299 GenomeReviews:AE014299_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HSSP:P10958 RefSeq:NP_718751.1
ProteinModelPortal:Q8ECE7 GeneID:1170890 KEGG:son:SO_3196
PATRIC:23526076 HOGENOM:HOG000289704 OMA:GLLDWGK
ProtClustDB:CLSK907046 Uniprot:Q8ECE7
Length = 367
Score = 129 (50.5 bits), Expect = 1.9e-06, P = 1.9e-06
Identities = 36/117 (30%), Positives = 60/117 (51%)
Query: 29 EVHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLI 88
+V +L V+D V R+++ L SGR A D EQ + F + D+I
Sbjct: 5 DVSILWVEDDPVFRQIVATFL-----------SGRGAQVVQAGDGEQGLIHFKQQRFDII 53
Query: 89 ITDYCMPGMTGYELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPV 145
+ D MP + G ++LK++ L +P +++S N++A + L GA D++VKPV
Sbjct: 54 LADLSMPKLGGLDMLKEMSKLEPL--VPSIVISGNNVMADVVEALRIGACDYLVKPV 108
>TIGR_CMR|GSU_1129 [details] [associations]
symbol:GSU_1129 "sigma-54 dependent DNA-binding response
regulator" species:243231 "Geobacter sulfurreducens PCA"
[GO:0000156 "phosphorelay response regulator activity"
evidence=ISS] [GO:0000160 "phosphorelay signal transduction system"
evidence=ISS] InterPro:IPR001789 InterPro:IPR002078
InterPro:IPR002197 InterPro:IPR003593 InterPro:IPR009057
Pfam:PF00072 Pfam:PF00158 Pfam:PF02954 PRINTS:PR01590
PROSITE:PS50045 PROSITE:PS50110 SMART:SM00382 SMART:SM00448
GO:GO:0005524 GO:GO:0035556 GO:GO:0003677 GO:GO:0003700
GO:GO:0006351 GO:GO:0005622 Gene3D:1.10.10.60 SUPFAM:SSF46689
EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0017111 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000058489
InterPro:IPR025662 InterPro:IPR025943 InterPro:IPR025944
PROSITE:PS00675 PROSITE:PS00676 PROSITE:PS00688 HSSP:P06143
RefSeq:NP_952182.1 ProteinModelPortal:Q74E35 GeneID:2687644
KEGG:gsu:GSU1129 PATRIC:22025020 OMA:YEFANII ProtClustDB:CLSK828199
BioCyc:GSUL243231:GH27-1139-MONOMER Uniprot:Q74E35
Length = 453
Score = 130 (50.8 bits), Expect = 1.9e-06, P = 1.9e-06
Identities = 34/126 (26%), Positives = 63/126 (50%)
Query: 28 EEVHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDL 87
E +L +DD R+ + LL + V + +G A Q L D D+
Sbjct: 3 ERTKILLIDDEETGREALTLLLKAAGHAVKSAGAGSEAFQTLTRDT-----------FDI 51
Query: 88 IITDYCMPGMTGYELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVKL 147
+ITD +P +G ++LKK+K+ + L E+ ++I + + + +++GA D+I KP+
Sbjct: 52 VITDLFLPDASGIDILKKVKEDAPLTEV-ILITGHASAETAV-KAMKEGAFDYITKPLNF 109
Query: 148 SDVKRI 153
++K I
Sbjct: 110 DELKII 115
>TIGR_CMR|GSU_2214 [details] [associations]
symbol:GSU_2214 "protein-glutamate methylesterase"
species:243231 "Geobacter sulfurreducens PCA" [GO:0006935
"chemotaxis" evidence=ISS] [GO:0008984 "protein-glutamate
methylesterase activity" evidence=ISS] HAMAP:MF_00099
InterPro:IPR000673 InterPro:IPR001789 InterPro:IPR008248
Pfam:PF00072 Pfam:PF01339 PIRSF:PIRSF000876 PROSITE:PS50110
PROSITE:PS50122 SMART:SM00448 GO:GO:0005737 GO:GO:0006355
GO:GO:0035556 GO:GO:0006935 EMBL:AE017180 GenomeReviews:AE017180_GR
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG2201
HOGENOM:HOG000151424 KO:K03412 GO:GO:0008984 Gene3D:3.40.50.180
SUPFAM:SSF52738 RefSeq:NP_953263.1 ProteinModelPortal:P62640
GeneID:2687095 KEGG:gsu:GSU2214 PATRIC:22027283 OMA:SQHMPAG
ProtClustDB:CLSK828757 BioCyc:GSUL243231:GH27-2152-MONOMER
Uniprot:P62640
Length = 371
Score = 129 (50.5 bits), Expect = 1.9e-06, P = 1.9e-06
Identities = 42/135 (31%), Positives = 69/135 (51%)
Query: 29 EVHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLI 88
++ V+ +DDS R+ I ++L S +V + D E+ I LK DL+
Sbjct: 3 KIRVVVIDDSAYSRRAITKMLE-SMPEVEVIG--------YATDGEEGIRKIIDLKPDLV 53
Query: 89 ITDYCMPGMTGYELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVK-L 147
D MP M G+ LL+ + + S V+++SS + ++ R LE GA DF+ KP K +
Sbjct: 54 TLDLEMPRMDGFTLLRIVMEYSPTA---VIVISSRSEDEKVFRALELGAVDFVAKPTKGV 110
Query: 148 SD-VKRIKDYLTRDV 161
S+ + I++ L R V
Sbjct: 111 SEEILTIREDLHRKV 125
>TIGR_CMR|BA_0994 [details] [associations]
symbol:BA_0994 "response regulator" species:198094
"Bacillus anthracis str. Ames" [GO:0000156 "phosphorelay response
regulator activity" evidence=ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=ISS] InterPro:IPR001789
InterPro:IPR001932 Pfam:PF00072 Pfam:PF07228 PROSITE:PS50110
SMART:SM00331 SMART:SM00448 GO:GO:0003824 GO:GO:0006355
GO:GO:0035556 EMBL:AE016879 EMBL:AE017334 EMBL:AE017225
GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0008152 GO:GO:0005622 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 SUPFAM:SSF81606 HSSP:Q9A5I4
OMA:ERKWGDL RefSeq:NP_843495.1 RefSeq:YP_017622.1
RefSeq:YP_027204.1 ProteinModelPortal:Q81U90 DNASU:1088940
EnsemblBacteria:EBBACT00000010036 EnsemblBacteria:EBBACT00000013718
EnsemblBacteria:EBBACT00000020226 GeneID:1088940 GeneID:2814732
GeneID:2850195 KEGG:ban:BA_0994 KEGG:bar:GBAA_0994 KEGG:bat:BAS0930
HOGENOM:HOG000084736 ProtClustDB:CLSK916048
BioCyc:BANT260799:GJAJ-1008-MONOMER
BioCyc:BANT261594:GJ7F-1053-MONOMER Uniprot:Q81U90
Length = 380
Score = 129 (50.5 bits), Expect = 2.0e-06, P = 2.0e-06
Identities = 29/125 (23%), Positives = 73/125 (58%)
Query: 32 VLAVDDSFVDRKVIERLLTISSCK-VTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIIT 90
+L VDD+ V+ VI+++L + + + +++S + +++ ++ S + ++DLI+
Sbjct: 3 ILIVDDNPVNIFVIKKILKQAGYQDLVSLNSAQELFEYIHFGKDSSRHN----EIDLILL 58
Query: 91 DYCMPGMTGYELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPV-KLSD 149
D MP + G E+ ++++ ++IP++ +++ ++ L+ GA D+I KP+ K+
Sbjct: 59 DIMMPEIDGLEVCRRLQKEEKFKDIPIIFVTALEDANKLAEALDIGAMDYITKPINKVEL 118
Query: 150 VKRIK 154
+ R++
Sbjct: 119 LARMR 123
>TAIR|locus:2065398 [details] [associations]
symbol:RR14 "response regulator 14" species:3702
"Arabidopsis thaliana" [GO:0000156 "phosphorelay response regulator
activity" evidence=IEA;ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0003700 "sequence-specific DNA
binding transcription factor activity" evidence=ISS] [GO:0009736
"cytokinin mediated signaling pathway" evidence=RCA;TAS]
[GO:0005515 "protein binding" evidence=IPI] [GO:0042802 "identical
protein binding" evidence=IPI] [GO:0010029 "regulation of seed
germination" evidence=RCA] [GO:0031537 "regulation of anthocyanin
metabolic process" evidence=RCA] [GO:0048831 "regulation of shoot
system development" evidence=RCA] InterPro:IPR001005
InterPro:IPR001789 InterPro:IPR009057 Pfam:PF00072 Pfam:PF00249
PROSITE:PS50110 SMART:SM00448 GO:GO:0005634 EMBL:CP002685
GenomeReviews:CT485783_GR GO:GO:0003677 GO:GO:0003700 GO:GO:0006351
GO:GO:0003682 Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0009736
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172 InterPro:IPR017930
InterPro:IPR006447 TIGRFAMs:TIGR01557 PROSITE:PS51294 KO:K14491
eggNOG:COG0745 InterPro:IPR017053 PIRSF:PIRSF036392 EMBL:AC006069
EMBL:AY099726 EMBL:AY128887 EMBL:AY088149 IPI:IPI00545640
PIR:G84428 RefSeq:NP_178285.1 UniGene:At.42470
ProteinModelPortal:Q8L9Y3 SMR:Q8L9Y3 IntAct:Q8L9Y3 STRING:Q8L9Y3
EnsemblPlants:AT2G01760.1 GeneID:814707 KEGG:ath:AT2G01760
GeneFarm:3930 TAIR:At2g01760 HOGENOM:HOG000034077 InParanoid:Q8L9Y3
OMA:SWILERS PhylomeDB:Q8L9Y3 ProtClustDB:CLSN2913129
Genevestigator:Q8L9Y3 GermOnline:AT2G01760 Uniprot:Q8L9Y3
Length = 382
Score = 129 (50.5 bits), Expect = 2.1e-06, P = 2.1e-06
Identities = 36/130 (27%), Positives = 67/130 (51%)
Query: 30 VHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLII 89
+ +L VDD ++E++L +VT AL L E+ + FD L++
Sbjct: 11 LRILVVDDDTSCLFILEKMLLRLMYQVTICSQADVALTIL---RERK-DSFD-----LVL 61
Query: 90 TDYCMPGMTGYELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVKLSD 149
+D MPGM GY LL+++ ++PV++MS + + + GA D+++KP++ +
Sbjct: 62 SDVHMPGMNGYNLLQQV--GLLEMDLPVIMMSVDGRTTTVMTGINHGACDYLIKPIRPEE 119
Query: 150 VKRIKDYLTR 159
+K I ++ R
Sbjct: 120 LKNIWQHVVR 129
>UNIPROTKB|Q8EEQ6 [details] [associations]
symbol:cheY "Chemotaxis signal transduction system response
regulator CheY" species:211586 "Shewanella oneidensis MR-1"
[GO:0004871 "signal transducer activity" evidence=ISS] [GO:0006935
"chemotaxis" evidence=ISS] InterPro:IPR001789 Pfam:PF00072
PROSITE:PS50110 SMART:SM00448 GO:GO:0006355 GO:GO:0035556
GO:GO:0005622 GO:GO:0006935 GO:GO:0004871 EMBL:AE014299
GenomeReviews:AE014299_GR GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 HOGENOM:HOG000034820 KO:K03413 OMA:KLANYKF
HSSP:P06143 RefSeq:NP_717910.1 ProteinModelPortal:Q8EEQ6
GeneID:1170042 KEGG:son:SO_2318 PATRIC:23524259 Uniprot:Q8EEQ6
Length = 121
Score = 110 (43.8 bits), Expect = 2.2e-06, P = 2.2e-06
Identities = 35/113 (30%), Positives = 58/113 (51%)
Query: 32 VLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITD 91
+L VDDS R V+ L + +V G+ AL +NG D K++LII+D
Sbjct: 4 ILVVDDSASIRHVVSIALRGAGYEVIDACDGKDALS--------KLNG-D--KINLIISD 52
Query: 92 YCMPGMTGYELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKP 144
MP M G LK++K + PV+++++E +++ GA+ ++VKP
Sbjct: 53 VNMPNMDGISFLKEVKKHPRYKFTPVIMLTTEAGRDKMEEGRMAGAKAWVVKP 105
>TIGR_CMR|SO_2318 [details] [associations]
symbol:SO_2318 "chemotaxis protein CheY" species:211586
"Shewanella oneidensis MR-1" [GO:0004871 "signal transducer
activity" evidence=ISS] [GO:0006935 "chemotaxis" evidence=ISS]
InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110 SMART:SM00448
GO:GO:0006355 GO:GO:0035556 GO:GO:0005622 GO:GO:0006935
GO:GO:0004871 EMBL:AE014299 GenomeReviews:AE014299_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034820 KO:K03413
OMA:KLANYKF HSSP:P06143 RefSeq:NP_717910.1
ProteinModelPortal:Q8EEQ6 GeneID:1170042 KEGG:son:SO_2318
PATRIC:23524259 Uniprot:Q8EEQ6
Length = 121
Score = 110 (43.8 bits), Expect = 2.2e-06, P = 2.2e-06
Identities = 35/113 (30%), Positives = 58/113 (51%)
Query: 32 VLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITD 91
+L VDDS R V+ L + +V G+ AL +NG D K++LII+D
Sbjct: 4 ILVVDDSASIRHVVSIALRGAGYEVIDACDGKDALS--------KLNG-D--KINLIISD 52
Query: 92 YCMPGMTGYELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKP 144
MP M G LK++K + PV+++++E +++ GA+ ++VKP
Sbjct: 53 VNMPNMDGISFLKEVKKHPRYKFTPVIMLTTEAGRDKMEEGRMAGAKAWVVKP 105
>UNIPROTKB|Q48P87 [details] [associations]
symbol:pilG "Type IV pilus response regulator PilG"
species:264730 "Pseudomonas syringae pv. phaseolicola 1448A"
[GO:0009297 "pilus assembly" evidence=ISS] InterPro:IPR001789
Pfam:PF00072 PROSITE:PS50110 SMART:SM00448 GO:GO:0006355
GO:GO:0035556 GO:GO:0005622 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 EMBL:CP000058 GenomeReviews:CP000058_GR
eggNOG:COG0784 HOGENOM:HOG000034820 GO:GO:0009297
RefSeq:YP_272782.1 ProteinModelPortal:Q48P87 STRING:Q48P87
GeneID:3558225 KEGG:psp:PSPPH_0479 PATRIC:19969990 KO:K02657
OMA:CDILMPR ProtClustDB:CLSK821914 Uniprot:Q48P87
Length = 136
Score = 109 (43.4 bits), Expect = 3.0e-06, P = 3.0e-06
Identities = 36/114 (31%), Positives = 57/114 (50%)
Query: 32 VLAVDDSFVDRKVIERLLTISSCKV-TAVDSGRRALQFLGLDEEQSINGFDGLKVDLIIT 90
V+ +DDS R+ E LL + C+V TA+D G AL + D I I
Sbjct: 10 VMVIDDSKTIRRTAETLLKNAGCEVITAID-GFDALAKIA-DNHPRI----------IFV 57
Query: 91 DYCMPGMTGYELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKP 144
D MP + GY+ IK++ A + PV+++SS++ L + G++ F+ KP
Sbjct: 58 DIMMPRLDGYQTCALIKNNRAFKSTPVIMLSSKDGLFDKAKGRIVGSDQFLTKP 111
>DICTYBASE|DDB_G0295835 [details] [associations]
symbol:dhkI-2 "histidine kinase I" species:44689
"Dictyostelium discoideum" [GO:0006928 "cellular component
movement" evidence=IGI] [GO:0035556 "intracellular signal
transduction" evidence=IEA] [GO:0023014 "signal transduction by
phosphorylation" evidence=IEA] [GO:0016772 "transferase activity,
transferring phosphorus-containing groups" evidence=IEA]
[GO:0016310 "phosphorylation" evidence=IEA] [GO:0016020 "membrane"
evidence=IEA] [GO:0007165 "signal transduction" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0004871
"signal transducer activity" evidence=IEA] [GO:0000160
"phosphorelay signal transduction system" evidence=IEA] [GO:0000156
"phosphorelay response regulator activity" evidence=IEA]
[GO:0000155 "phosphorelay sensor kinase activity" evidence=IEA]
[GO:0004673 "protein histidine kinase activity" evidence=IEA]
[GO:0016740 "transferase activity" evidence=IEA] [GO:0016301
"kinase activity" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000014 InterPro:IPR000700
InterPro:IPR001789 InterPro:IPR003594 InterPro:IPR003661
InterPro:IPR004358 InterPro:IPR009082 Pfam:PF00072 Pfam:PF00512
Pfam:PF02518 PRINTS:PR00344 PROSITE:PS50110 PROSITE:PS50112
PROSITE:PS50113 SMART:SM00091 SMART:SM00387 SMART:SM00388
SMART:SM00448 InterPro:IPR005467 dictyBase:DDB_G0295835
dictyBase:DDB_G0273475 GO:GO:0005524 GO:GO:0016020 GO:GO:0006355
GO:GO:0035556 GenomeReviews:CM000151_GR GO:GO:0006928 GO:GO:0005622
GO:GO:0023014 GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
HSSP:P39928 eggNOG:COG0784 GO:GO:0000155 Gene3D:1.10.287.130
Gene3D:3.30.565.10 SUPFAM:SSF55874 SUPFAM:SSF47384 PROSITE:PS50109
EMBL:AAFI02000010 EMBL:AF362371 RefSeq:XP_644590.1
ProteinModelPortal:Q86AT9 PRIDE:Q86AT9 EnsemblProtists:DDB0231984
GeneID:8618954 KEGG:ddi:DDB_G0273475 OMA:HRISSIC
ProtClustDB:CLSZ2729225 Uniprot:Q86AT9
Length = 1736
Score = 133 (51.9 bits), Expect = 4.2e-06, P = 4.2e-06
Identities = 35/129 (27%), Positives = 66/129 (51%)
Query: 19 GFDLSPSDTEEVHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSIN 78
G ++S S VL +D+ +++K+I+ LLT +T G++AL F + +SI
Sbjct: 1539 GIEISGSQMIPQKVLVAEDNTMNQKLIKTLLTKRGFDITIAKDGKQALDFYHESKNKSI- 1597
Query: 79 GFDGLKVDLIITDYCMPGMTGYELLKKIKDSSALR--EIPVVIMSSENILARIDRCLEDG 136
D I+ D MP ++G E I++ A IP++ +++ + ++ LE G
Sbjct: 1598 -----LYDCILMDIQMPILSGLEATCAIREIEANEGGHIPIIAVTAHAMKGDKEKFLESG 1652
Query: 137 AEDFIVKPV 145
+D++ KP+
Sbjct: 1653 VDDYVTKPI 1661
>DICTYBASE|DDB_G0273475 [details] [associations]
symbol:dhkI-1 "histidine kinase I" species:44689
"Dictyostelium discoideum" [GO:0006928 "cellular component
movement" evidence=IGI] [GO:0035556 "intracellular signal
transduction" evidence=IEA] [GO:0023014 "signal transduction by
phosphorylation" evidence=IEA] [GO:0016772 "transferase activity,
transferring phosphorus-containing groups" evidence=IEA]
[GO:0016310 "phosphorylation" evidence=IEA] [GO:0016020 "membrane"
evidence=IEA] [GO:0007165 "signal transduction" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0004871
"signal transducer activity" evidence=IEA] [GO:0000160
"phosphorelay signal transduction system" evidence=IEA] [GO:0000156
"phosphorelay response regulator activity" evidence=IEA]
[GO:0000155 "phosphorelay sensor kinase activity" evidence=IEA]
[GO:0004673 "protein histidine kinase activity" evidence=IEA]
[GO:0016740 "transferase activity" evidence=IEA] [GO:0016301
"kinase activity" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000014 InterPro:IPR000700
InterPro:IPR001789 InterPro:IPR003594 InterPro:IPR003661
InterPro:IPR004358 InterPro:IPR009082 Pfam:PF00072 Pfam:PF00512
Pfam:PF02518 PRINTS:PR00344 PROSITE:PS50110 PROSITE:PS50112
PROSITE:PS50113 SMART:SM00091 SMART:SM00387 SMART:SM00388
SMART:SM00448 InterPro:IPR005467 dictyBase:DDB_G0295835
dictyBase:DDB_G0273475 GO:GO:0005524 GO:GO:0016020 GO:GO:0006355
GO:GO:0035556 GenomeReviews:CM000151_GR GO:GO:0006928 GO:GO:0005622
GO:GO:0023014 GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
HSSP:P39928 eggNOG:COG0784 GO:GO:0000155 Gene3D:1.10.287.130
Gene3D:3.30.565.10 SUPFAM:SSF55874 SUPFAM:SSF47384 PROSITE:PS50109
EMBL:AAFI02000010 EMBL:AF362371 RefSeq:XP_644590.1
ProteinModelPortal:Q86AT9 PRIDE:Q86AT9 EnsemblProtists:DDB0231984
GeneID:8618954 KEGG:ddi:DDB_G0273475 OMA:HRISSIC
ProtClustDB:CLSZ2729225 Uniprot:Q86AT9
Length = 1736
Score = 133 (51.9 bits), Expect = 4.2e-06, P = 4.2e-06
Identities = 35/129 (27%), Positives = 66/129 (51%)
Query: 19 GFDLSPSDTEEVHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSIN 78
G ++S S VL +D+ +++K+I+ LLT +T G++AL F + +SI
Sbjct: 1539 GIEISGSQMIPQKVLVAEDNTMNQKLIKTLLTKRGFDITIAKDGKQALDFYHESKNKSI- 1597
Query: 79 GFDGLKVDLIITDYCMPGMTGYELLKKIKDSSALR--EIPVVIMSSENILARIDRCLEDG 136
D I+ D MP ++G E I++ A IP++ +++ + ++ LE G
Sbjct: 1598 -----LYDCILMDIQMPILSGLEATCAIREIEANEGGHIPIIAVTAHAMKGDKEKFLESG 1652
Query: 137 AEDFIVKPV 145
+D++ KP+
Sbjct: 1653 VDDYVTKPI 1661
>TIGR_CMR|GSU_1220 [details] [associations]
symbol:GSU_1220 "response regulator" species:243231
"Geobacter sulfurreducens PCA" [GO:0000156 "phosphorelay response
regulator activity" evidence=ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=ISS] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=ISS] InterPro:IPR001789
InterPro:IPR007831 Pfam:PF00072 Pfam:PF05157 PROSITE:PS50110
SMART:SM00448 GO:GO:0005524 GO:GO:0006355 GO:GO:0035556
GO:GO:0006810 GO:GO:0005622 EMBL:AE017180 GenomeReviews:AE017180_GR
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172 RefSeq:NP_952273.1
ProteinModelPortal:Q74DU5 DNASU:2688249 GeneID:2688249
KEGG:gsu:GSU1220 PATRIC:22025211 HOGENOM:HOG000134726 OMA:PIRIVTR
ProtClustDB:CLSK828245 BioCyc:GSUL243231:GH27-1212-MONOMER
Uniprot:Q74DU5
Length = 277
Score = 124 (48.7 bits), Expect = 4.7e-06, P = 4.7e-06
Identities = 35/105 (33%), Positives = 56/105 (53%)
Query: 65 ALQFLGLDEEQSINGFDGLKV------DLIITDYCMPGMTGYELLKKIKDSSALREIPVV 118
AL G D + +G +GLK DLII D MP M G+ L++ ++ + + + P++
Sbjct: 171 ALHKEGFDVLLAGDGVEGLKTAVVEKPDLIICDSVMPRMDGFSLMRAVRSNPTIADTPMI 230
Query: 119 IMSSENILARIDRCLEDGAEDFIVKPVK----LSDVKRIKDYLTR 159
+++S+ R LE G DFI KPV+ ++ V+R D L R
Sbjct: 231 LLTSKATGEDEQRALEAGFIDFIAKPVQPIRIVTRVRRAFDLLKR 275
>UNIPROTKB|Q9KSB1 [details] [associations]
symbol:VC_1348 "Response regulator" species:243277 "Vibrio
cholerae O1 biovar El Tor str. N16961" [GO:0000156 "phosphorelay
response regulator activity" evidence=ISS] [GO:0000160
"phosphorelay signal transduction system" evidence=ISS] [GO:0035556
"intracellular signal transduction" evidence=ISS]
InterPro:IPR001789 InterPro:IPR003607 InterPro:IPR006674
Pfam:PF00072 PROSITE:PS50110 SMART:SM00448 SMART:SM00471
GO:GO:0006355 GO:GO:0046872 EMBL:AE003852 GenomeReviews:AE003852_GR
GO:GO:0008152 GO:GO:0005622 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 GO:GO:0008081 Gene3D:1.10.3210.10 HSSP:Q9A5I4
KO:K07814 PIR:G82211 RefSeq:NP_230992.1 ProteinModelPortal:Q9KSB1
DNASU:2614802 GeneID:2614802 KEGG:vch:VC1348 PATRIC:20081772
OMA:DNPRSRH ProtClustDB:CLSK794088 Uniprot:Q9KSB1
Length = 441
Score = 127 (49.8 bits), Expect = 4.8e-06, P = 4.8e-06
Identities = 45/167 (26%), Positives = 80/167 (47%)
Query: 20 FDLSPSDTEEVHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSING 79
F +S D + +L VDDS + + + L ++ A SG+ AL+ L
Sbjct: 61 FHMSMEDLSQCTILIVDDSPDNIAFMSQGLA-QYYRIKAARSGKVALEILAQ-------- 111
Query: 80 FDGLKVDLIITDYCMPGMTGYELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAED 139
+DL++ D MP M+GYE++ +IK + IPV+ ++ ++ E GA D
Sbjct: 112 ---YPIDLVLLDIVMPEMSGYEVINQIKHNPHTEHIPVIFLTGKSNPEDEQLGFELGAVD 168
Query: 140 FIVKPVKLSDVK-RIKDYL----TRDVNLGNEGRGINKRKARESCDL 181
++ KPV + +K R+ +L ++D+ L N+ + R S +L
Sbjct: 169 YVFKPVSIPLLKSRVHTHLQNKRSKDILL-NQNDYLETEVLRRSGEL 214
>TIGR_CMR|VC_1348 [details] [associations]
symbol:VC_1348 "response regulator" species:686 "Vibrio
cholerae O1 biovar El Tor" [GO:0000156 "phosphorelay response
regulator activity" evidence=ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=ISS] InterPro:IPR001789
InterPro:IPR003607 InterPro:IPR006674 Pfam:PF00072 PROSITE:PS50110
SMART:SM00448 SMART:SM00471 GO:GO:0006355 GO:GO:0046872
EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0008152 GO:GO:0005622
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172 GO:GO:0008081
Gene3D:1.10.3210.10 HSSP:Q9A5I4 KO:K07814 PIR:G82211
RefSeq:NP_230992.1 ProteinModelPortal:Q9KSB1 DNASU:2614802
GeneID:2614802 KEGG:vch:VC1348 PATRIC:20081772 OMA:DNPRSRH
ProtClustDB:CLSK794088 Uniprot:Q9KSB1
Length = 441
Score = 127 (49.8 bits), Expect = 4.8e-06, P = 4.8e-06
Identities = 45/167 (26%), Positives = 80/167 (47%)
Query: 20 FDLSPSDTEEVHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSING 79
F +S D + +L VDDS + + + L ++ A SG+ AL+ L
Sbjct: 61 FHMSMEDLSQCTILIVDDSPDNIAFMSQGLA-QYYRIKAARSGKVALEILAQ-------- 111
Query: 80 FDGLKVDLIITDYCMPGMTGYELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAED 139
+DL++ D MP M+GYE++ +IK + IPV+ ++ ++ E GA D
Sbjct: 112 ---YPIDLVLLDIVMPEMSGYEVINQIKHNPHTEHIPVIFLTGKSNPEDEQLGFELGAVD 168
Query: 140 FIVKPVKLSDVK-RIKDYL----TRDVNLGNEGRGINKRKARESCDL 181
++ KPV + +K R+ +L ++D+ L N+ + R S +L
Sbjct: 169 YVFKPVSIPLLKSRVHTHLQNKRSKDILL-NQNDYLETEVLRRSGEL 214
>TIGR_CMR|CHY_1413 [details] [associations]
symbol:CHY_1413 "DNA-binding response regulator"
species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0000156 "phosphorelay response regulator activity"
evidence=ISS] [GO:0000160 "phosphorelay signal transduction system"
evidence=ISS] InterPro:IPR001789 InterPro:IPR001867 Pfam:PF00072
Pfam:PF00486 PROSITE:PS50110 SMART:SM00448 SMART:SM00862
GO:GO:0006355 GO:GO:0035556 GO:GO:0003677 EMBL:CP000141
GenomeReviews:CP000141_GR Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0005622 GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
eggNOG:COG0745 HOGENOM:HOG000034819 RefSeq:YP_360245.1
ProteinModelPortal:Q3AC89 SMR:Q3AC89 STRING:Q3AC89 GeneID:3728069
KEGG:chy:CHY_1413 PATRIC:21275957 OMA:EHAWIAT
BioCyc:CHYD246194:GJCN-1412-MONOMER Uniprot:Q3AC89
Length = 228
Score = 122 (48.0 bits), Expect = 4.9e-06, P = 4.9e-06
Identities = 30/91 (32%), Positives = 54/91 (59%)
Query: 72 DEEQSINGFDGLKVDLIITDYCMPGMTGYELLKKIKDSSALREIPVVIMSSENILARIDR 131
D ++++ F K+DLII D +P + G E+ K+I+ +S +P++++++ ID+
Sbjct: 33 DGKEALKRFSEHKIDLIILDLMLPEIDGMEIAKEIRKTSL---VPIIMLTARG--EEIDK 87
Query: 132 CL--EDGAEDFIVKPVKLSDV-KRIKDYLTR 159
L E GA+D++VKP +V R+K L R
Sbjct: 88 ILGLEIGADDYVVKPFSPREVVARVKAVLRR 118
>UNIPROTKB|Q45976 [details] [associations]
symbol:divK "Cell division response regulator DivK"
species:155892 "Caulobacter vibrioides" [GO:0005515 "protein
binding" evidence=IPI] InterPro:IPR001789 Pfam:PF00072
PROSITE:PS50110 SMART:SM00448 GO:GO:0051301 GO:GO:0006355
GO:GO:0035556 GO:GO:0005622 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 EMBL:U13765 PIR:S58671 HSSP:Q9A5I4
ProteinModelPortal:Q45976 SMR:Q45976 DIP:DIP-46001N IntAct:Q45976
Uniprot:Q45976
Length = 125
Score = 107 (42.7 bits), Expect = 5.1e-06, P = 5.1e-06
Identities = 37/129 (28%), Positives = 61/129 (47%)
Query: 32 VLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITD 91
VL V+D+ ++ K+ LL + R L L + E K DLI+ D
Sbjct: 5 VLIVEDNELNMKLFHDLLEAQGYETLQT---REGLSALSIAREN--------KPDLILMD 53
Query: 92 YCMPGMTGYELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVKLSD-V 150
+P ++G E+ K +K+ L IPVV +++ + +R E G E +I KP+ + +
Sbjct: 54 IQLPEISGLEVTKWLKEDDDLAHIPVVAVTAFAMKGDEERIREGGCEAYISKPISVVHFL 113
Query: 151 KRIKDYLTR 159
+ IK L R
Sbjct: 114 ETIKRLLER 122
>TIGR_CMR|CBU_0760 [details] [associations]
symbol:CBU_0760 "response regulator protein, putative"
species:227377 "Coxiella burnetii RSA 493" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110 SMART:SM00448
GO:GO:0006355 GO:GO:0035556 GO:GO:0016740 GO:GO:0005622
EMBL:AE016828 GenomeReviews:AE016828_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034820 OMA:DMDMPIM
HSSP:Q9A5I4 RefSeq:NP_819784.1 ProteinModelPortal:Q83DH3
GeneID:1208651 KEGG:cbu:CBU_0760 PATRIC:17930215
ProtClustDB:CLSK914293 BioCyc:CBUR227377:GJ7S-758-MONOMER
Uniprot:Q83DH3
Length = 124
Score = 107 (42.7 bits), Expect = 5.1e-06, P = 5.1e-06
Identities = 36/125 (28%), Positives = 60/125 (48%)
Query: 32 VLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITD 91
+L V+D+ +K+ +LL +C+VT G+ AL D K DLI D
Sbjct: 12 ILLVEDNPFIQKIHVQLLKKLNCEVTLAIDGQSALALYS----------D--KFDLIFLD 59
Query: 92 YCMPGMTGYELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVKLSDVK 151
+ M G E+ K I+ ++ P++ ++SE+ + R G DFI KP + +K
Sbjct: 60 INLSDMNGMEVCKAIRQRTS--STPIIALTSESSKNK-PRYFSTGINDFIKKPTTQAALK 116
Query: 152 RIKDY 156
R+ +Y
Sbjct: 117 RVLNY 121
>TIGR_CMR|GSU_1117 [details] [associations]
symbol:GSU_1117 "response regulator" species:243231
"Geobacter sulfurreducens PCA" [GO:0000156 "phosphorelay response
regulator activity" evidence=ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=ISS] InterPro:IPR001789 Pfam:PF00072
PROSITE:PS50110 SMART:SM00448 GO:GO:0006355 GO:GO:0035556
GO:GO:0005622 EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034820 HSSP:P06143
RefSeq:NP_952170.1 ProteinModelPortal:Q74E47 GeneID:2686890
KEGG:gsu:GSU1117 PATRIC:22024996 OMA:ASNVIMI ProtClustDB:CLSK828188
BioCyc:GSUL243231:GH27-1119-MONOMER Uniprot:Q74E47
Length = 127
Score = 107 (42.7 bits), Expect = 5.1e-06, P = 5.1e-06
Identities = 35/122 (28%), Positives = 63/122 (51%)
Query: 32 VLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITD 91
+L VDD R + +LL +V +V +G AL +L +++ +N +I+TD
Sbjct: 9 ILVVDDEENARIGLTKLLEREGFEVASVSNGFEALNYL---QQREVN--------VIVTD 57
Query: 92 YCMPGMTGYELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVKLSDVK 151
MP M G L+++ S + ++I + + + I+ + GA ++I KPVKL ++K
Sbjct: 58 INMPEMNGITFLRELNKSFPRSNV-IMITAYGGVESYIE-AMNLGAFEYINKPVKLDELK 115
Query: 152 RI 153
I
Sbjct: 116 SI 117
>TIGR_CMR|CPS_1619 [details] [associations]
symbol:CPS_1619 "DNA-binding response regulator"
species:167879 "Colwellia psychrerythraea 34H" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] InterPro:IPR001789 InterPro:IPR009061
InterPro:IPR010093 Pfam:PF00072 PROSITE:PS50110 SMART:SM00448
GO:GO:0006355 GO:GO:0000166 GO:GO:0035556 GO:GO:0003677
GO:GO:0005622 EMBL:CP000083 GenomeReviews:CP000083_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG0745 SUPFAM:SSF46955
TIGRFAMs:TIGR01764 ProtClustDB:CLSK741041 RefSeq:YP_268357.1
ProteinModelPortal:Q485A8 STRING:Q485A8 GeneID:3520728
KEGG:cps:CPS_1619 PATRIC:21466431 HOGENOM:HOG000133916 OMA:DEYEIAM
BioCyc:CPSY167879:GI48-1696-MONOMER Uniprot:Q485A8
Length = 185
Score = 118 (46.6 bits), Expect = 6.2e-06, P = 6.2e-06
Identities = 22/73 (30%), Positives = 42/73 (57%)
Query: 83 LKVDLIITDYCMPGMTGYELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIV 142
+K +I D MP + G+ + K I+ + A + P++ MS + I++ + GA F++
Sbjct: 108 IKPSIIFLDLVMPDIDGFAVCKHIRSNEASKNTPIIAMSGLSQQENIEKVIASGANTFLM 167
Query: 143 KPVKLSDVKRIKD 155
KP++LS +K+ D
Sbjct: 168 KPIRLSVLKQAVD 180
>TIGR_CMR|CBU_0367 [details] [associations]
symbol:CBU_0367 "DNA-binding response regulator PhoB"
species:227377 "Coxiella burnetii RSA 493" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0003677 "DNA binding" evidence=ISS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] [GO:0006796 "phosphate-containing
compound metabolic process" evidence=ISS] [GO:0006817 "phosphate
ion transport" evidence=ISS] InterPro:IPR001789 InterPro:IPR001867
InterPro:IPR011879 Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110
SMART:SM00448 SMART:SM00862 GO:GO:0006355 GO:GO:0035556
GO:GO:0003677 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005622
EMBL:AE016828 GenomeReviews:AE016828_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 GO:GO:0006817
HOGENOM:HOG000034819 HSSP:P08402 KO:K07657 TIGRFAMs:TIGR02154
RefSeq:NP_819407.1 ProteinModelPortal:Q83EF6 PRIDE:Q83EF6
GeneID:1208249 KEGG:cbu:CBU_0367 PATRIC:17929423 OMA:YRFSARY
ProtClustDB:CLSK914019 BioCyc:CBUR227377:GJ7S-368-MONOMER
Uniprot:Q83EF6
Length = 248
Score = 122 (48.0 bits), Expect = 6.4e-06, P = 6.4e-06
Identities = 39/134 (29%), Positives = 68/134 (50%)
Query: 32 VLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRAL--QFLGLDEEQSINGFDGLKV---D 86
+L ++ RK+ +LL I ++ D R +L +F LD E + L D
Sbjct: 7 ILRTNEFISVRKI--KLLIIED-EIAIRDMVRFSLPDEFELLDAEDTAKAIKQLAAQIPD 63
Query: 87 LIITDYCMPGMTGYELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVK 146
LI+ D+ +PG +G E ++ IK ++IP+V+++++ R L GA+D+I KP
Sbjct: 64 LILLDWMLPGKSGIEFIEWIKQKEIWQDIPIVLLTAKAEEENKVRGLMSGADDYITKPFS 123
Query: 147 LSD-VKRIKDYLTR 159
+ + RI+ L R
Sbjct: 124 PDELIARIRAILRR 137
>TIGR_CMR|SO_1558 [details] [associations]
symbol:SO_1558 "phosphate regulon response regulator PhoB"
species:211586 "Shewanella oneidensis MR-1" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0003677 "DNA binding" evidence=ISS] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=ISS] InterPro:IPR001789
InterPro:IPR001867 InterPro:IPR011879 Pfam:PF00072 Pfam:PF00486
PROSITE:PS50110 SMART:SM00448 SMART:SM00862 GO:GO:0006355
GO:GO:0035556 GO:GO:0003677 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0005622 EMBL:AE014299 GenomeReviews:AE014299_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 GO:GO:0006817
HOGENOM:HOG000034819 HSSP:P08402 KO:K07657 OMA:QVLEMGP
TIGRFAMs:TIGR02154 RefSeq:NP_717171.2 ProteinModelPortal:Q8EGP1
GeneID:1169364 KEGG:son:SO_1558 PATRIC:23522760
ProtClustDB:CLSK906318 Uniprot:Q8EGP1
Length = 229
Score = 121 (47.7 bits), Expect = 6.6e-06, P = 6.6e-06
Identities = 27/75 (36%), Positives = 44/75 (58%)
Query: 86 DLIITDYCMPGMTGYELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPV 145
DLI+ D+ PG +G +L K++K R+IP++++++ + LE GA+D+I KP
Sbjct: 48 DLILLDWMFPGGSGIQLAKRLKQDEFTRQIPIIMLTARGEEEDKVKGLEVGADDYITKPF 107
Query: 146 KLSD-VKRIKDYLTR 159
+ V RIK L R
Sbjct: 108 SPKELVARIKAVLRR 122
>TIGR_CMR|BA_4777 [details] [associations]
symbol:BA_4777 "DNA-binding response regulator"
species:198094 "Bacillus anthracis str. Ames" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0003677 "DNA binding" evidence=ISS] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=ISS] InterPro:IPR001789
InterPro:IPR001867 Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110
SMART:SM00448 SMART:SM00862 GO:GO:0006355 GO:GO:0035556
EMBL:AE016879 EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003677
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005622 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034819 HSSP:P08402
RefSeq:NP_846982.1 RefSeq:YP_021423.1 RefSeq:YP_030680.1
ProteinModelPortal:Q81L55 DNASU:1083888
EnsemblBacteria:EBBACT00000012704 EnsemblBacteria:EBBACT00000017584
EnsemblBacteria:EBBACT00000020354 GeneID:1083888 GeneID:2815717
GeneID:2851624 KEGG:ban:BA_4777 KEGG:bar:GBAA_4777 KEGG:bat:BAS4433
OMA:DISIQEM ProtClustDB:CLSK917419
BioCyc:BANT260799:GJAJ-4490-MONOMER
BioCyc:BANT261594:GJ7F-4640-MONOMER Uniprot:Q81L55
Length = 230
Score = 121 (47.7 bits), Expect = 6.7e-06, P = 6.7e-06
Identities = 38/132 (28%), Positives = 70/132 (53%)
Query: 31 HVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIIT 90
H+L V+D ++++E+ L +VT G G+D + G DLII
Sbjct: 4 HILLVEDDLSIQEMVEKYLVKEGFQVTIASDGEE-----GVDTY--LKG----SFDLIIL 52
Query: 91 DYCMPGMTGYELLKKIKDSSALREIPVVIMSSENILARIDRC--LEDGAEDFIVKPVKLS 148
D MP + G E+++ I++ SA +P+++MS+++ +D+ L GA+D+I KP +
Sbjct: 53 DIMMPKLDGLEVVRIIREKSA---VPILMMSAKD--TDVDKAVGLGLGADDYICKPFSMI 107
Query: 149 DVK-RIKDYLTR 159
++ R+K + R
Sbjct: 108 ELAARVKAGIRR 119
>UNIPROTKB|Q52884 [details] [associations]
symbol:cheY2 "CheY2" species:382 "Sinorhizobium meliloti"
[GO:0005515 "protein binding" evidence=IPI] InterPro:IPR001789
Pfam:PF00072 PROSITE:PS50110 SMART:SM00448 GO:GO:0006355
GO:GO:0035556 GO:GO:0005622 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 HOGENOM:HOG000034820 EMBL:U13166
GenomeReviews:AL591688_GR PIR:S61838 PDB:1P6Q PDB:1P6U PDBsum:1P6Q
PDBsum:1P6U ProteinModelPortal:Q52884 SMR:Q52884 IntAct:Q52884
PATRIC:23630501 ProtClustDB:CLSK800134 EvolutionaryTrace:Q52884
Uniprot:Q52884
Length = 129
Score = 106 (42.4 bits), Expect = 6.7e-06, P = 6.7e-06
Identities = 28/125 (22%), Positives = 61/125 (48%)
Query: 28 EEVHVLAVDDSFVDRKVI-ERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVD 86
E++ VL VDD R ++ + L + ++TA G + ++ + +
Sbjct: 5 EKIKVLIVDDQVTSRLLLGDALQQLGFKQITAAGDGEQGMKIMAQNPHH----------- 53
Query: 87 LIITDYCMPGMTGYELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVK 146
L+I+D+ MP M G LL+ ++ + A ++ +I++++ A + + GA + + KP
Sbjct: 54 LVISDFNMPKMDGLGLLQAVRANPATKKAAFIILTAQGDRALVQKAAALGANNVLAKPFT 113
Query: 147 LSDVK 151
+ +K
Sbjct: 114 IEKMK 118
>TIGR_CMR|CPS_1208 [details] [associations]
symbol:CPS_1208 "phosphate regulon response regulator
PhoB" species:167879 "Colwellia psychrerythraea 34H" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0003677 "DNA binding" evidence=ISS] [GO:0006796
"phosphate-containing compound metabolic process" evidence=ISS]
[GO:0006817 "phosphate ion transport" evidence=ISS]
InterPro:IPR001789 InterPro:IPR001867 InterPro:IPR011879
Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110 SMART:SM00448
SMART:SM00862 GO:GO:0006355 GO:GO:0035556 GO:GO:0003677
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005622 EMBL:CP000083
GenomeReviews:CP000083_GR GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 GO:GO:0006817 eggNOG:COG0745 HOGENOM:HOG000034819
KO:K07657 OMA:QVLEMGP TIGRFAMs:TIGR02154 RefSeq:YP_267951.1
ProteinModelPortal:Q486R4 SMR:Q486R4 STRING:Q486R4 GeneID:3522949
KEGG:cps:CPS_1208 PATRIC:21465661
BioCyc:CPSY167879:GI48-1289-MONOMER Uniprot:Q486R4
Length = 233
Score = 121 (47.7 bits), Expect = 7.0e-06, P = 7.0e-06
Identities = 28/89 (31%), Positives = 48/89 (53%)
Query: 72 DEEQSINGFDGLKVDLIITDYCMPGMTGYELLKKIKDSSALREIPVVIMSSENILARIDR 131
D EQ++ DLI+ D+ +PG TG L KK+K + R IP++++++ + +
Sbjct: 34 DIEQALAKIHEPYPDLILLDWMLPGGTGVSLAKKLKQNEYTRNIPIIMLTARSDEDDKVK 93
Query: 132 CLEDGAEDFIVKPVKLSD-VKRIKDYLTR 159
E G +DF+ KP + + RIK + R
Sbjct: 94 GFEAGVDDFVTKPFSPKELIARIKAVIRR 122
>TIGR_CMR|GSU_1495 [details] [associations]
symbol:GSU_1495 "sigma-54 dependent DNA-binding response
regulator" species:243231 "Geobacter sulfurreducens PCA"
[GO:0000156 "phosphorelay response regulator activity"
evidence=ISS] [GO:0000160 "phosphorelay signal transduction system"
evidence=ISS] [GO:0003677 "DNA binding" evidence=ISS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] InterPro:IPR001789 InterPro:IPR002078
InterPro:IPR002197 InterPro:IPR003593 InterPro:IPR009057
Pfam:PF00072 Pfam:PF00158 Pfam:PF02954 PRINTS:PR01590
PROSITE:PS50045 PROSITE:PS50110 SMART:SM00382 SMART:SM00448
GO:GO:0005524 GO:GO:0035556 GO:GO:0003677 GO:GO:0003700
GO:GO:0006351 GO:GO:0005622 Gene3D:1.10.10.60 SUPFAM:SSF46689
EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0017111 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000058489
InterPro:IPR025662 InterPro:IPR025943 InterPro:IPR025944
PROSITE:PS00675 PROSITE:PS00676 PROSITE:PS00688 HSSP:P06143
RefSeq:NP_952546.1 ProteinModelPortal:Q74D24 GeneID:2686126
KEGG:gsu:GSU1495 PATRIC:22025837 KO:K02667 OMA:IHARAGH
ProtClustDB:CLSK828394 BioCyc:GSUL243231:GH27-1478-MONOMER
Uniprot:Q74D24
Length = 458
Score = 126 (49.4 bits), Expect = 7.1e-06, P = 7.1e-06
Identities = 39/123 (31%), Positives = 62/123 (50%)
Query: 29 EVHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLI 88
E+HVL VDD R+ + LL V S AL L E ++ DL+
Sbjct: 2 EIHVLVVDDELSMREFLAILLDREGYTVDQAASAEEALACL---ERKTY--------DLV 50
Query: 89 ITDYCMPGMTGYELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVKLS 148
I+D MPG+ G LL +IK+ + + V++M++ + + ++ GA D+I KP K+
Sbjct: 51 ISDVKMPGLDGITLLGRIKEMTP--DTAVLLMTAFSTAEQAVEAMKLGAYDYIAKPFKVE 108
Query: 149 DVK 151
+VK
Sbjct: 109 EVK 111
>TIGR_CMR|CPS_1474 [details] [associations]
symbol:CPS_1474 "chemotaxis protein CheV" species:167879
"Colwellia psychrerythraea 34H" [GO:0004871 "signal transducer
activity" evidence=ISS] [GO:0006935 "chemotaxis" evidence=ISS]
InterPro:IPR001789 InterPro:IPR002545 Pfam:PF00072 Pfam:PF01584
PROSITE:PS50110 PROSITE:PS50851 SMART:SM00260 SMART:SM00448
GO:GO:0006355 GO:GO:0035556 GO:GO:0005622 GO:GO:0006935
EMBL:CP000083 GenomeReviews:CP000083_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 SUPFAM:SSF50341 eggNOG:COG0835
HOGENOM:HOG000255027 KO:K03415 InterPro:IPR024181 PIRSF:PIRSF002867
RefSeq:YP_268216.1 ProteinModelPortal:Q485P9 STRING:Q485P9
GeneID:3523307 KEGG:cps:CPS_1474 PATRIC:21466155 OMA:AWEELSR
BioCyc:CPSY167879:GI48-1555-MONOMER Uniprot:Q485P9
Length = 309
Score = 123 (48.4 bits), Expect = 8.4e-06, P = 8.4e-06
Identities = 38/131 (29%), Positives = 67/131 (51%)
Query: 13 ISDEIDGFDLSPSDTEEVHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLD 72
+S++I + + +++ V+ DDS V R + R L + +GR AL+ L L
Sbjct: 163 VSEDIIDVSIGENLGDKL-VMIADDSTVARNQVRRALEPLGINMVLAKNGRDALEQL-LA 220
Query: 73 EEQSINGFDGLKVDLIITDYCMPGMTGYELLKKIKDSSALREIPVVIMSSENILARIDRC 132
E + KV L+I+D MP M GY L ++K + + ++P+++ +S + +
Sbjct: 221 IEATCENCITEKVALMISDIEMPEMDGYTLTAEVKGNDRMSKMPIILHTSLSGVFNNAMV 280
Query: 133 LEDGAEDFIVK 143
+ GAEDFI K
Sbjct: 281 EKVGAEDFIPK 291
>UNIPROTKB|Q1CXR3 [details] [associations]
symbol:difD "Fibril biogenesis regulator DifD"
species:246197 "Myxococcus xanthus DK 1622" [GO:0005515 "protein
binding" evidence=IPI] InterPro:IPR001789 Pfam:PF00072
PROSITE:PS50110 SMART:SM00448 GO:GO:0006355 GO:GO:0035556
GO:GO:0005622 EMBL:CP000113 GenomeReviews:CP000113_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG0784
HOGENOM:HOG000034820 KO:K03413 RefSeq:YP_634810.1
ProteinModelPortal:Q1CXR3 SMR:Q1CXR3 IntAct:Q1CXR3 STRING:Q1CXR3
GeneID:4104566 KEGG:mxa:MXAN_6693 PATRIC:22655877 OMA:PFQAPKV
ProtClustDB:CLSK947176 BioCyc:MXAN246197:GIWU-6635-MONOMER
Uniprot:Q1CXR3
Length = 122
Score = 105 (42.0 bits), Expect = 8.8e-06, P = 8.8e-06
Identities = 39/121 (32%), Positives = 59/121 (48%)
Query: 32 VLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITD 91
VL VDD+ R +I+ + +V G A GL+ ++ + LK DL D
Sbjct: 5 VLVVDDAIFMRNMIKDIFASGGFEVV----GEAAN---GLE---AVEKYKELKPDLTTMD 54
Query: 92 YCMPGMTGYELLKKI--KDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVKLSD 149
MP +G E ++I DSSA+ V++ S+ + + +E GA DFIVKP + D
Sbjct: 55 IVMPFKSGIEATREIIKADSSAV----VIMCSALGQESLVMEAIEAGASDFIVKPFRAED 110
Query: 150 V 150
V
Sbjct: 111 V 111
>UNIPROTKB|Q48ND2 [details] [associations]
symbol:cheY1 "Chemotaxis protein CheY" species:264730
"Pseudomonas syringae pv. phaseolicola 1448A" [GO:0006935
"chemotaxis" evidence=ISS] InterPro:IPR001789 Pfam:PF00072
PROSITE:PS50110 SMART:SM00448 GO:GO:0006355 GO:GO:0035556
GO:GO:0005622 GO:GO:0006935 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 EMBL:CP000058 GenomeReviews:CP000058_GR
eggNOG:COG0784 HOGENOM:HOG000034820 KO:K03413 RefSeq:YP_273089.1
ProteinModelPortal:Q48ND2 STRING:Q48ND2 GeneID:3556464
KEGG:psp:PSPPH_0807 PATRIC:19970685 OMA:KLANYKF
ProtClustDB:CLSK642719 Uniprot:Q48ND2
Length = 122
Score = 105 (42.0 bits), Expect = 8.8e-06, P = 8.8e-06
Identities = 30/113 (26%), Positives = 59/113 (52%)
Query: 32 VLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITD 91
VL VDDS R+V+ + + S +++ D + ++ G KV LII+D
Sbjct: 5 VLVVDDSSSVRQVVG--IALKSAGYDVIEA---------CDGKDALGKLTGQKVHLIISD 53
Query: 92 YCMPGMTGYELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKP 144
MP M G +K++K ++ + P++++++E+ ++ GA+ ++VKP
Sbjct: 54 VNMPNMDGITFVKEVKKLASYKFTPIIMLTTESQESKKAEGQAAGAKAWVVKP 106
>TIGR_CMR|GSU_1302 [details] [associations]
symbol:GSU_1302 "sensor histidine kinase/response
regulator" species:243231 "Geobacter sulfurreducens PCA"
[GO:0000155 "phosphorelay sensor kinase activity" evidence=ISS]
[GO:0000156 "phosphorelay response regulator activity"
evidence=ISS] [GO:0000160 "phosphorelay signal transduction system"
evidence=ISS] InterPro:IPR001789 InterPro:IPR003594
InterPro:IPR003660 InterPro:IPR003661 InterPro:IPR004358
InterPro:IPR008207 InterPro:IPR009082 Pfam:PF00072 Pfam:PF00512
Pfam:PF00672 Pfam:PF01627 Pfam:PF02518 PRINTS:PR00344
PROSITE:PS50110 PROSITE:PS50885 PROSITE:PS50894 SMART:SM00073
SMART:SM00304 SMART:SM00387 SMART:SM00388 SMART:SM00448
InterPro:IPR005467 GO:GO:0016021 GO:GO:0005524 GO:GO:0006355
GO:GO:0035556 GO:GO:0005622 EMBL:AE017180 GenomeReviews:AE017180_GR
GO:GO:0023014 GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
GO:GO:0000155 Gene3D:1.10.287.130 Gene3D:3.30.565.10
SUPFAM:SSF55874 SUPFAM:SSF47384 PROSITE:PS50109 Gene3D:1.20.120.160
SUPFAM:SSF47226 InterPro:IPR021796 Pfam:PF11845 RefSeq:NP_952355.1
ProteinModelPortal:Q74DL4 GeneID:2686509 KEGG:gsu:GSU1302
PATRIC:22025379 HOGENOM:HOG000131064 OMA:DQADAFE
ProtClustDB:CLSK743117 BioCyc:GSUL243231:GH27-1286-MONOMER
Uniprot:Q74DL4
Length = 835
Score = 128 (50.1 bits), Expect = 8.8e-06, P = 8.8e-06
Identities = 38/127 (29%), Positives = 64/127 (50%)
Query: 30 VHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLII 89
+ VL V+D+ ++R V LLT + +VTAV +GR A+ L D + +L+
Sbjct: 576 LEVLLVEDNDLNRTVAVGLLTALNQRVTAVTNGREAIDVLR-DRD----------FELVF 624
Query: 90 TDYCMPGMTGYELLKKIKDSSA---LREIPVVIMSSENILARIDRCLEDGAEDFIVKPVK 146
D MP M G E I+ A R P+V +++ + A +RCLE ++ KP+
Sbjct: 625 MDISMPEMDGIEATWAIRRGEAGERARSTPIVFLTAHALAADRERCLEADVTGYLTKPLL 684
Query: 147 LSDVKRI 153
+++R+
Sbjct: 685 REELRRM 691
>TIGR_CMR|SPO_0022 [details] [associations]
symbol:SPO_0022 "response regulator" species:246200
"Ruegeria pomeroyi DSS-3" [GO:0000156 "phosphorelay response
regulator activity" evidence=ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=ISS] InterPro:IPR001789
InterPro:IPR001932 Pfam:PF00072 Pfam:PF07228 PROSITE:PS50110
SMART:SM00331 SMART:SM00448 GO:GO:0003824 GO:GO:0006355
GO:GO:0035556 EMBL:CP000031 GenomeReviews:CP000031_GR GO:GO:0008152
GO:GO:0005622 GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
SUPFAM:SSF81606 RefSeq:YP_165295.1 ProteinModelPortal:Q5LWH9
GeneID:3194721 KEGG:sil:SPO0022 PATRIC:23373275
HOGENOM:HOG000291805 OMA:ERKWGDL ProtClustDB:CLSK933114
Uniprot:Q5LWH9
Length = 445
Score = 125 (49.1 bits), Expect = 9.0e-06, P = 9.0e-06
Identities = 32/131 (24%), Positives = 66/131 (50%)
Query: 21 DLSPSDTEEVHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGF 80
D+ P V L VDDS + R+++ L +V +SG A++
Sbjct: 34 DMEPGAIRRV--LVVDDSRLQRRILSSSLKKWGFEVIEAESGEEAMEICAR--------- 82
Query: 81 DGLKVDLIITDYCMPGMTGYELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDF 140
DL+++D+ MPGM+G + + + ++ R ++++S++ + + L+ GA+DF
Sbjct: 83 --AMPDLVLSDWVMPGMSGVDFCEAFRQLNSDRYCYFILLTSKSEKNEVAQGLDAGADDF 140
Query: 141 IVKPVKLSDVK 151
++KPV +++
Sbjct: 141 LIKPVSSDELR 151
>TIGR_CMR|GSU_1927 [details] [associations]
symbol:GSU_1927 "sensory box/response regulator"
species:243231 "Geobacter sulfurreducens PCA" [GO:0000155
"phosphorelay sensor kinase activity" evidence=ISS] [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
InterPro:IPR000014 InterPro:IPR000700 InterPro:IPR001054
InterPro:IPR001789 InterPro:IPR013655 Pfam:PF00072 Pfam:PF08447
PROSITE:PS50110 PROSITE:PS50113 SMART:SM00091 SMART:SM00448
InterPro:IPR001610 Pfam:PF00990 Pfam:PF00563 GO:GO:0006355
GO:GO:0005622 EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0023014
SUPFAM:SSF55073 SMART:SM00086 TIGRFAMs:TIGR00229 GO:GO:0016849
GO:GO:0009190 InterPro:IPR000160 SMART:SM00267 TIGRFAMs:TIGR00254
PROSITE:PS50887 Gene3D:3.20.20.450 InterPro:IPR001633 SMART:SM00052
SUPFAM:SSF141868 PROSITE:PS50883 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 GO:GO:0000155 HOGENOM:HOG000136246
RefSeq:NP_952976.2 GeneID:2688352 KEGG:gsu:GSU1927 PATRIC:22026719
BioCyc:GSUL243231:GH27-2001-MONOMER Uniprot:Q74BV5
Length = 708
Score = 127 (49.8 bits), Expect = 9.5e-06, P = 9.5e-06
Identities = 33/102 (32%), Positives = 53/102 (51%)
Query: 58 AVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKKIKDSSALREIPV 117
AV+ G A+ G D +I F L D+I+ D MPGM G+++ ++I+ + +
Sbjct: 29 AVEQGGFAVIEAG-DGVTAIEMFSRLVPDIILLDVVMPGMGGFDVCRRIRRLPGGDRVQI 87
Query: 118 VIMSSENILARIDRCLEDGAEDFIVKPVKLSDVKRIKDYLTR 159
++M+S + ID E GA DF+ KP+ + R YL R
Sbjct: 88 LVMTSLDDTGAIDEAYEAGASDFLAKPIDWVLLPRRIRYLLR 129
>UNIPROTKB|Q9KUA1 [details] [associations]
symbol:VC_0622 "Sensory box sensor histidine
kinase/response regulator" species:243277 "Vibrio cholerae O1
biovar El Tor str. N16961" [GO:0000155 "phosphorelay sensor kinase
activity" evidence=ISS] [GO:0000156 "phosphorelay response
regulator activity" evidence=ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=ISS] [GO:0023014 "signal transduction
by phosphorylation" evidence=ISS] [GO:0035556 "intracellular signal
transduction" evidence=ISS] InterPro:IPR000014 InterPro:IPR001789
InterPro:IPR003594 InterPro:IPR003660 InterPro:IPR003661
InterPro:IPR004358 InterPro:IPR009082 Pfam:PF00072 Pfam:PF00512
Pfam:PF00672 Pfam:PF02518 Pfam:PF13188 PRINTS:PR00344
PROSITE:PS50110 PROSITE:PS50885 SMART:SM00091 SMART:SM00304
SMART:SM00387 SMART:SM00388 SMART:SM00448 InterPro:IPR005467
GO:GO:0016021 GO:GO:0005524 GO:GO:0006355 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0005622 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 GO:GO:0000155
Gene3D:1.10.287.130 Gene3D:3.30.565.10 SUPFAM:SSF55874
SUPFAM:SSF47384 PROSITE:PS50109 HSSP:P08402 PIR:A82300
RefSeq:NP_230271.1 ProteinModelPortal:Q9KUA1 DNASU:2615410
GeneID:2615410 KEGG:vch:VC0622 PATRIC:20080353 OMA:SLYVSSQ
ProtClustDB:CLSK874044 Uniprot:Q9KUA1
Length = 1177
Score = 129 (50.5 bits), Expect = 1.0e-05, P = 1.0e-05
Identities = 34/128 (26%), Positives = 66/128 (51%)
Query: 32 VLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITD 91
+L DD V+ +V++ L + +V G + L+ + E K +L++ D
Sbjct: 772 LLVADDEPVNLRVLDSFLRLEGYRVHTAQDGHQVLE--AIKRE---------KPELVLLD 820
Query: 92 YCMPGMTGYELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVKLSDVK 151
MPGM+GY++ +K++ + E+P++++++ N R E GA D++ KP ++
Sbjct: 821 IMMPGMSGYQVCEKLRQTYDHAELPIIMLTALNQSDDRVRGFEAGANDYLSKPFNKQELA 880
Query: 152 -RIKDYLT 158
RI +LT
Sbjct: 881 ARIVAHLT 888
>TIGR_CMR|VC_0622 [details] [associations]
symbol:VC_0622 "sensory box sensor histidine
kinase/response regulator" species:686 "Vibrio cholerae O1 biovar
El Tor" [GO:0000155 "phosphorelay sensor kinase activity"
evidence=ISS] [GO:0000156 "phosphorelay response regulator
activity" evidence=ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=ISS] InterPro:IPR000014
InterPro:IPR001789 InterPro:IPR003594 InterPro:IPR003660
InterPro:IPR003661 InterPro:IPR004358 InterPro:IPR009082
Pfam:PF00072 Pfam:PF00512 Pfam:PF00672 Pfam:PF02518 Pfam:PF13188
PRINTS:PR00344 PROSITE:PS50110 PROSITE:PS50885 SMART:SM00091
SMART:SM00304 SMART:SM00387 SMART:SM00388 SMART:SM00448
InterPro:IPR005467 GO:GO:0016021 GO:GO:0005524 GO:GO:0006355
EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0005622 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 GO:GO:0000155
Gene3D:1.10.287.130 Gene3D:3.30.565.10 SUPFAM:SSF55874
SUPFAM:SSF47384 PROSITE:PS50109 HSSP:P08402 PIR:A82300
RefSeq:NP_230271.1 ProteinModelPortal:Q9KUA1 DNASU:2615410
GeneID:2615410 KEGG:vch:VC0622 PATRIC:20080353 OMA:SLYVSSQ
ProtClustDB:CLSK874044 Uniprot:Q9KUA1
Length = 1177
Score = 129 (50.5 bits), Expect = 1.0e-05, P = 1.0e-05
Identities = 34/128 (26%), Positives = 66/128 (51%)
Query: 32 VLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITD 91
+L DD V+ +V++ L + +V G + L+ + E K +L++ D
Sbjct: 772 LLVADDEPVNLRVLDSFLRLEGYRVHTAQDGHQVLE--AIKRE---------KPELVLLD 820
Query: 92 YCMPGMTGYELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVKLSDVK 151
MPGM+GY++ +K++ + E+P++++++ N R E GA D++ KP ++
Sbjct: 821 IMMPGMSGYQVCEKLRQTYDHAELPIIMLTALNQSDDRVRGFEAGANDYLSKPFNKQELA 880
Query: 152 -RIKDYLT 158
RI +LT
Sbjct: 881 ARIVAHLT 888
>UNIPROTKB|Q746Z1 [details] [associations]
symbol:GSU3376 "Response receiver-modulated diguanylate
cyclase" species:243231 "Geobacter sulfurreducens PCA" [GO:0003674
"molecular_function" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR001054 InterPro:IPR001789 Pfam:PF00072
PROSITE:PS50110 SMART:SM00448 Pfam:PF00990 GO:GO:0006355
GO:GO:0005622 EMBL:AE017180 GenomeReviews:AE017180_GR
SUPFAM:SSF55073 GO:GO:0016849 GO:GO:0009190 InterPro:IPR000160
SMART:SM00267 TIGRFAMs:TIGR00254 PROSITE:PS50887 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 RefSeq:NP_954416.1 HSSP:P06143
ProteinModelPortal:Q746Z1 GeneID:2686891 KEGG:gsu:GSU3376
PATRIC:22029607 HOGENOM:HOG000167205 OMA:LTHLHNR
ProtClustDB:CLSK829255 BioCyc:GSUL243231:GH27-3335-MONOMER
Uniprot:Q746Z1
Length = 308
Score = 121 (47.7 bits), Expect = 1.5e-05, P = 1.5e-05
Identities = 29/89 (32%), Positives = 50/89 (56%)
Query: 71 LDEEQSINGFDGL---KVDLIITDYCMPGMTGYELLKKIKDSSALREIPVVIMSS-ENIL 126
L+ + GF L KVDL++ D MP M G+ L + L+++P+++++S E+
Sbjct: 32 LEARDGLEGFKTLLNNKVDLVLCDLEMPRMDGFRFLSMTRSRGELQDLPIILLTSREDRD 91
Query: 127 ARIDRCLEDGAEDFIVKPVKLSD-VKRIK 154
+I R LE GA D++ KP + V R++
Sbjct: 92 TKI-RGLEQGASDYVTKPFDSGELVARVR 119
>TIGR_CMR|GSU_3376 [details] [associations]
symbol:GSU_3376 "GGDEF/response regulator receiver domain
protein" species:243231 "Geobacter sulfurreducens PCA" [GO:0003674
"molecular_function" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR001054 InterPro:IPR001789 Pfam:PF00072
PROSITE:PS50110 SMART:SM00448 Pfam:PF00990 GO:GO:0006355
GO:GO:0005622 EMBL:AE017180 GenomeReviews:AE017180_GR
SUPFAM:SSF55073 GO:GO:0016849 GO:GO:0009190 InterPro:IPR000160
SMART:SM00267 TIGRFAMs:TIGR00254 PROSITE:PS50887 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 RefSeq:NP_954416.1 HSSP:P06143
ProteinModelPortal:Q746Z1 GeneID:2686891 KEGG:gsu:GSU3376
PATRIC:22029607 HOGENOM:HOG000167205 OMA:LTHLHNR
ProtClustDB:CLSK829255 BioCyc:GSUL243231:GH27-3335-MONOMER
Uniprot:Q746Z1
Length = 308
Score = 121 (47.7 bits), Expect = 1.5e-05, P = 1.5e-05
Identities = 29/89 (32%), Positives = 50/89 (56%)
Query: 71 LDEEQSINGFDGL---KVDLIITDYCMPGMTGYELLKKIKDSSALREIPVVIMSS-ENIL 126
L+ + GF L KVDL++ D MP M G+ L + L+++P+++++S E+
Sbjct: 32 LEARDGLEGFKTLLNNKVDLVLCDLEMPRMDGFRFLSMTRSRGELQDLPIILLTSREDRD 91
Query: 127 ARIDRCLEDGAEDFIVKPVKLSD-VKRIK 154
+I R LE GA D++ KP + V R++
Sbjct: 92 TKI-RGLEQGASDYVTKPFDSGELVARVR 119
>TIGR_CMR|CBU_0634 [details] [associations]
symbol:CBU_0634 "sensory box sensor histidine
kinase/response regulator" species:227377 "Coxiella burnetii RSA
493" [GO:0000155 "phosphorelay sensor kinase activity"
evidence=ISS] [GO:0000156 "phosphorelay response regulator
activity" evidence=ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=ISS] InterPro:IPR000014
InterPro:IPR000700 InterPro:IPR001789 InterPro:IPR003594
InterPro:IPR003661 InterPro:IPR004358 InterPro:IPR009082
Pfam:PF00072 Pfam:PF00512 Pfam:PF02518 Pfam:PF13188 PRINTS:PR00344
PROSITE:PS50110 PROSITE:PS50112 PROSITE:PS50113 SMART:SM00091
SMART:SM00387 SMART:SM00388 SMART:SM00448 InterPro:IPR005467
InterPro:IPR001610 GO:GO:0005524 GO:GO:0016020 GO:GO:0006355
GO:GO:0035556 GO:GO:0005622 EMBL:AE016828 GenomeReviews:AE016828_GR
GO:GO:0023014 SMART:SM00086 TIGRFAMs:TIGR00229 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 GO:GO:0000155
Gene3D:1.10.287.130 Gene3D:3.30.565.10 SUPFAM:SSF55874
SUPFAM:SSF47384 PROSITE:PS50109 InterPro:IPR013656 Pfam:PF08448
RefSeq:NP_819664.2 ProteinModelPortal:Q83DR2 GeneID:1208519
KEGG:cbu:CBU_0634 PATRIC:17929947 HOGENOM:HOG000026879 OMA:ICRRIAQ
ProtClustDB:CLSK914201 BioCyc:CBUR227377:GJ7S-631-MONOMER
Uniprot:Q83DR2
Length = 630
Score = 125 (49.1 bits), Expect = 1.5e-05, P = 1.5e-05
Identities = 35/131 (26%), Positives = 67/131 (51%)
Query: 29 EVHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLI 88
+V VL ++D + + + + L CKV + AL + +E +LI
Sbjct: 511 KVRVLLIEDDKLSQNIEKIFLEEFGCKVDTASNAEEAL--VKFNESY----------ELI 558
Query: 89 ITDYCMPGMTGYELLKKIKD-SSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVKL 147
TD +P GY L+++I+ +++ + +P++ M++ ++CLE G FI KPV +
Sbjct: 559 CTDIGLPDKDGYALVREIRQMANSHKPVPILAMTAHVFDREKNKCLEAGMNGFINKPVTV 618
Query: 148 SDVKR-IKDYL 157
+++R + DYL
Sbjct: 619 EEIRRALLDYL 629
>UNIPROTKB|Q7D1A5 [details] [associations]
symbol:cheY "Chemotaxis receiver protein" species:176299
"Agrobacterium fabrum str. C58" [GO:0006928 "cellular component
movement" evidence=IGC] [GO:0052143 "chemotaxis on or near host
involved in symbiotic interaction" evidence=IGC] InterPro:IPR001789
Pfam:PF00072 PROSITE:PS50110 SMART:SM00448 GO:GO:0006355
GO:GO:0035556 GO:GO:0006928 GO:GO:0005622 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG0784
HOGENOM:HOG000034820 EMBL:AE007869 GenomeReviews:AE007869_GR
GO:GO:0052143 KO:K03413 ProtClustDB:CLSK800134 HSSP:P06143
RefSeq:NP_353549.1 ProteinModelPortal:Q7D1A5 SMR:Q7D1A5
STRING:Q7D1A5 GeneID:1132558 KEGG:atu:Atu0520 PATRIC:20810743
OMA:FKQITAA Uniprot:Q7D1A5
Length = 129
Score = 103 (41.3 bits), Expect = 1.5e-05, P = 1.5e-05
Identities = 29/125 (23%), Positives = 61/125 (48%)
Query: 28 EEVHVLAVDDSFVDRKVIERLLTISSCK-VTAVDSGRRALQFLGLDEEQSINGFDGLKVD 86
E++ VL VDD R ++ LT K +T+ G + L+ + E+Q +
Sbjct: 5 EKIKVLIVDDQVTSRLLLSDALTQLGFKQITSAGDGEQGLKIM---EQQPHH-------- 53
Query: 87 LIITDYCMPGMTGYELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVK 146
L+I+D+ MP M G L ++ + ++ +I++++ A + + + GA + + KP
Sbjct: 54 LVISDFNMPKMDGLGFLHAVRANPTTKKAAFIILTAQGDRALVQKAAQLGANNVLAKPFT 113
Query: 147 LSDVK 151
+ ++
Sbjct: 114 IDKMR 118
>NCBI_NP|NP_353549.1 [details] [associations]
symbol:cheY "chemotaxisreceiverprotein" species:176299
"Agrobacterium fabrum str. C58" [GO:0052143 "chemotaxis on or near
host involved in symbiotic interaction" evidence=IGC] [GO:0006928
"cellular component movement" evidence=IGC] [GO:0000160
"phosphorelay signal transduction system" evidence=ISS]
REFSEQ:NC_003062 Ncbi:NP_353549
Length = 129
Score = 103 (41.3 bits), Expect = 1.5e-05, P = 1.5e-05
Identities = 29/125 (23%), Positives = 61/125 (48%)
Query: 28 EEVHVLAVDDSFVDRKVIERLLTISSCK-VTAVDSGRRALQFLGLDEEQSINGFDGLKVD 86
E++ VL VDD R ++ LT K +T+ G + L+ + E+Q +
Sbjct: 5 EKIKVLIVDDQVTSRLLLSDALTQLGFKQITSAGDGEQGLKIM---EQQPHH-------- 53
Query: 87 LIITDYCMPGMTGYELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVK 146
L+I+D+ MP M G L ++ + ++ +I++++ A + + + GA + + KP
Sbjct: 54 LVISDFNMPKMDGLGFLHAVRANPTTKKAAFIILTAQGDRALVQKAAQLGANNVLAKPFT 113
Query: 147 LSDVK 151
+ ++
Sbjct: 114 IDKMR 118
>UNIPROTKB|Q0BZW4 [details] [associations]
symbol:pleD "Response regulator PleD" species:228405
"Hyphomonas neptunium ATCC 15444" [GO:0004871 "signal transducer
activity" evidence=ISS] [GO:0007165 "signal transduction"
evidence=ISS] InterPro:IPR001054 InterPro:IPR001789 Pfam:PF00072
PROSITE:PS50110 SMART:SM00448 Pfam:PF00990 GO:GO:0006355
GO:GO:0005622 GO:GO:0004871 SUPFAM:SSF55073 GO:GO:0016849
GO:GO:0009190 InterPro:IPR000160 SMART:SM00267 TIGRFAMs:TIGR00254
PROSITE:PS50887 GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
eggNOG:COG3706 EMBL:CP000158 GenomeReviews:CP000158_GR KO:K02488
HOGENOM:HOG000167204 RefSeq:YP_760979.1 ProteinModelPortal:Q0BZW4
STRING:Q0BZW4 GeneID:4287816 KEGG:hne:HNE_2284 PATRIC:32217411
OMA:APRTINA BioCyc:HNEP228405:GI69-2306-MONOMER Uniprot:Q0BZW4
Length = 455
Score = 123 (48.4 bits), Expect = 1.7e-05, P = 1.7e-05
Identities = 35/114 (30%), Positives = 60/114 (52%)
Query: 32 VLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITD 91
+L VDD +R++++ L V ++G +AL+ Q N ++I+ D
Sbjct: 5 ILVVDDIEANRRLLQAKLEAQYHTVLMAENGPQALEVA-----QRENP------EIILLD 53
Query: 92 YCMPGMTGYELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPV 145
MPGM GYE+ +++K IPVV++++ + + + L GAEDF+ KPV
Sbjct: 54 VMMPGMDGYEVCQRLKADPTTSYIPVVMVTALSEMEDRVKGLAAGAEDFLTKPV 107
>UNIPROTKB|Q1DF43 [details] [associations]
symbol:MXAN_0460 "Response regulator" species:246197
"Myxococcus xanthus DK 1622" [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110
SMART:SM00448 GO:GO:0006355 GO:GO:0035556 GO:GO:0005622
EMBL:CP000113 GenomeReviews:CP000113_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG2204
RefSeq:YP_628730.1 ProteinModelPortal:Q1DF43 IntAct:Q1DF43
STRING:Q1DF43 GeneID:4103270 KEGG:mxa:MXAN_0460 PATRIC:22643509
HOGENOM:HOG000025389 OMA:NLELEGH ProtClustDB:CLSK955207
BioCyc:MXAN246197:GIWU-455-MONOMER Uniprot:Q1DF43
Length = 255
Score = 119 (46.9 bits), Expect = 1.7e-05, P = 1.7e-05
Identities = 43/128 (33%), Positives = 63/128 (49%)
Query: 32 VLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITD 91
+L VDD R + L + V +G AL+ L E+QS VD+++TD
Sbjct: 12 ILLVDDEESLRITLAANLELEGHTVLEAANGEEALRLL---EKQS--------VDVVLTD 60
Query: 92 YCMPGMTGYELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVKLSDVK 151
MPG+ G ELL++IK ++PVV+M++ +D L +GA F V P K DV
Sbjct: 61 IRMPGLHGVELLRRIKQERP--DMPVVLMTAFTAEELVDDALAEGA--FTVLP-KPFDVT 115
Query: 152 RIKDYLTR 159
D + R
Sbjct: 116 HALDTVLR 123
>TIGR_CMR|SPO_2087 [details] [associations]
symbol:SPO_2087 "nitrogen regulation protein NtrC"
species:246200 "Ruegeria pomeroyi DSS-3" [GO:0000156 "phosphorelay
response regulator activity" evidence=ISS] [GO:0000160
"phosphorelay signal transduction system" evidence=ISS] [GO:0009399
"nitrogen fixation" evidence=ISS] InterPro:IPR001789
InterPro:IPR002078 InterPro:IPR002197 InterPro:IPR003593
InterPro:IPR009057 Pfam:PF00072 Pfam:PF00158 Pfam:PF02954
PRINTS:PR01590 PROSITE:PS50045 PROSITE:PS50110 SMART:SM00382
SMART:SM00448 GO:GO:0005524 GO:GO:0035556 EMBL:CP000031
GenomeReviews:CP000031_GR GO:GO:0003677 GO:GO:0003700 GO:GO:0006351
GO:GO:0005622 Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0017111
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
HOGENOM:HOG000058489 InterPro:IPR025662 InterPro:IPR025944
PROSITE:PS00675 PROSITE:PS00688 KO:K07712 RefSeq:YP_167317.1
ProteinModelPortal:Q5LRN8 DNASU:3195357 GeneID:3195357
KEGG:sil:SPO2087 PATRIC:23377515 OMA:YEEAGSA ProtClustDB:CLSK933754
Uniprot:Q5LRN8
Length = 457
Score = 123 (48.4 bits), Expect = 1.7e-05, P = 1.7e-05
Identities = 38/122 (31%), Positives = 62/122 (50%)
Query: 32 VLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITD 91
VL DD R V+ + LT + CKV A S ++++ +G K D++I+D
Sbjct: 5 VLVADDDRTIRTVLTQALTRAGCKVHATSSLTTLMRWVA----------EG-KGDVVISD 53
Query: 92 YCMPGMTGYELLKKI-KDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVKLSDV 150
MP G E+L KI +D L PV+++S++N + + E A D++ KP L D+
Sbjct: 54 VVMPDGNGLEMLPKIAQDRPGL---PVIVISAQNTIMTAIQAAEAEAYDYLPKPFDLPDL 110
Query: 151 KR 152
+
Sbjct: 111 MK 112
>TIGR_CMR|SO_0860 [details] [associations]
symbol:SO_0860 "response regulator" species:211586
"Shewanella oneidensis MR-1" [GO:0000156 "phosphorelay response
regulator activity" evidence=ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=ISS] InterPro:IPR001789
InterPro:IPR003607 InterPro:IPR006674 Pfam:PF00072 Pfam:PF01966
PROSITE:PS50110 SMART:SM00448 SMART:SM00471 GO:GO:0006355
GO:GO:0035556 GO:GO:0046872 GO:GO:0008152 GO:GO:0005622
EMBL:AE014299 GenomeReviews:AE014299_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 GO:GO:0008081
Gene3D:1.10.3210.10 HOGENOM:HOG000266481 OMA:CELIYNA KO:K07814
HSSP:P06628 RefSeq:NP_716491.2 ProteinModelPortal:Q8EIH9
GeneID:1168707 KEGG:son:SO_0860 PATRIC:23521381
ProtClustDB:CLSK905977 Uniprot:Q8EIH9
Length = 338
Score = 121 (47.7 bits), Expect = 1.8e-05, P = 1.8e-05
Identities = 29/73 (39%), Positives = 42/73 (57%)
Query: 86 DLIITDYCMPGMTGYELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPV 145
DLI+ D MPGM GYE+ K +K IPV+ +++ + +A + GA D+I KPV
Sbjct: 48 DLILLDVMMPGMNGYEVCKLLKQEPLTCHIPVIFVTALSEVADEAQGFALGAVDYITKPV 107
Query: 146 KLSDVK-RIKDYL 157
VK R+K +L
Sbjct: 108 SAPVVKARVKTHL 120
>UNIPROTKB|P06628 [details] [associations]
symbol:spo0F "Sporulation initiation phosphotransferase F"
species:224308 "Bacillus subtilis subsp. subtilis str. 168"
[GO:0005515 "protein binding" evidence=IPI] InterPro:IPR001789
Pfam:PF00072 PROSITE:PS50110 SMART:SM00448 GO:GO:0005737
GO:GO:0006355 GO:GO:0035556 GO:GO:0046872 GO:GO:0030435
GO:GO:0016301 EMBL:AL009126 GenomeReviews:AL009126_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG0784
HOGENOM:HOG000034820 EMBL:Z49782 EMBL:X03497 EMBL:M11081
EMBL:M22039 PIR:A24737 RefSeq:NP_391594.1 PDB:1F51 PDB:1FSP
PDB:1NAT PDB:1PEY PDB:1PUX PDB:1SRR PDB:2FSP PDB:2FTK PDB:2JVI
PDB:2JVJ PDB:2JVK PDB:3Q15 PDBsum:1F51 PDBsum:1FSP PDBsum:1NAT
PDBsum:1PEY PDBsum:1PUX PDBsum:1SRR PDBsum:2FSP PDBsum:2FTK
PDBsum:2JVI PDBsum:2JVJ PDBsum:2JVK PDBsum:3Q15
ProteinModelPortal:P06628 SMR:P06628 DIP:DIP-58965N IntAct:P06628
EnsemblBacteria:EBBACT00000000330 GeneID:937041 KEGG:bsu:BSU37130
PATRIC:18979462 GenoList:BSU37130 KO:K02490 OMA:IRVIIMT
ProtClustDB:CLSK873695 BioCyc:BSUB:BSU37130-MONOMER
BindingDB:P06628 ChEMBL:CHEMBL3857 EvolutionaryTrace:P06628
Uniprot:P06628
Length = 124
Score = 102 (41.0 bits), Expect = 2.0e-05, P = 2.0e-05
Identities = 30/95 (31%), Positives = 46/95 (48%)
Query: 70 GLDEEQSINGFDGLKV------DLIITDYCMPGMTGYELLKKIKDSSALREIPVVIMSSE 123
G Q+ NG L + DL++ D +PGM G E+LK++K I V+IM++
Sbjct: 27 GYQTFQAANGLQALDIVTKERPDLVLLDMKIPGMDGIEILKRMKVID--ENIRVIIMTAY 84
Query: 124 NILARIDRCLEDGAEDFIVKPVKLSDVK-RIKDYL 157
L I E GA KP + +++ +K YL
Sbjct: 85 GELDMIQESKELGALTHFAKPFDIDEIRDAVKKYL 119
>TIGR_CMR|GSU_2581 [details] [associations]
symbol:GSU_2581 "sigma-54 dependent transcriptional
regulator" species:243231 "Geobacter sulfurreducens PCA"
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] InterPro:IPR001789 InterPro:IPR002078
InterPro:IPR002197 InterPro:IPR003593 InterPro:IPR009057
Pfam:PF00072 Pfam:PF00158 Pfam:PF02954 PROSITE:PS50045
PROSITE:PS50110 SMART:SM00382 SMART:SM00448 GO:GO:0005524
GO:GO:0035556 GO:GO:0003677 GO:GO:0003700 GO:GO:0006351
GO:GO:0005622 Gene3D:1.10.10.60 SUPFAM:SSF46689 EMBL:AE017180
GenomeReviews:AE017180_GR GO:GO:0017111 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000058489
InterPro:IPR025944 PROSITE:PS00688 HSSP:P06143 RefSeq:NP_953627.1
ProteinModelPortal:Q74A10 GeneID:2687775 KEGG:gsu:GSU2581
PATRIC:22028017 OMA:LTERIMA ProtClustDB:CLSK763211
BioCyc:GSUL243231:GH27-2558-MONOMER Uniprot:Q74A10
Length = 456
Score = 122 (48.0 bits), Expect = 2.3e-05, P = 2.3e-05
Identities = 39/123 (31%), Positives = 64/123 (52%)
Query: 32 VLAVDDSFVDRKVIERLLTISS-CKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIIT 90
+LAVDD + ++E LL + +TAV SG +AL L + E VDL+I+
Sbjct: 6 ILAVDDDELSLLMLENLLADAGFAPLTAV-SGAQALALL--EREH---------VDLLIS 53
Query: 91 DYCMPGMTGYELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVKLSDV 150
D M GM G ELL ++++ +PV+++++ + + GA D++ KP +V
Sbjct: 54 DLIMEGMNGLELLDRVRERYP--NVPVIVVTARGSVESAVEAMRRGAYDYLAKPFN-PEV 110
Query: 151 KRI 153
RI
Sbjct: 111 LRI 113
>UNIPROTKB|Q9KU11 [details] [associations]
symbol:VC_0719 "DNA-binding response regulator PhoB"
species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0000156 "phosphorelay response regulator activity"
evidence=ISS] [GO:0000160 "phosphorelay signal transduction system"
evidence=ISS] [GO:0035556 "intracellular signal transduction"
evidence=ISS] InterPro:IPR001789 InterPro:IPR001867
InterPro:IPR011879 Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110
SMART:SM00448 SMART:SM00862 GO:GO:0006355 GO:GO:0003677
EMBL:AE003852 GenomeReviews:AE003852_GR Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0005622 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 GO:GO:0006817 HSSP:P08402 KO:K07657 OMA:QVLEMGP
TIGRFAMs:TIGR02154 PIR:H82288 RefSeq:NP_230368.1
ProteinModelPortal:Q9KU11 SMR:Q9KU11 DNASU:2615728 GeneID:2615728
KEGG:vch:VC0719 PATRIC:20080557 ProtClustDB:CLSK874084
Uniprot:Q9KU11
Length = 229
Score = 117 (46.2 bits), Expect = 2.3e-05, P = 2.3e-05
Identities = 27/75 (36%), Positives = 43/75 (57%)
Query: 86 DLIITDYCMPGMTGYELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPV 145
DL++ D+ +PG +G L+K +K R IPVV++++ R LE GA+D+I KP
Sbjct: 48 DLVLLDWMLPGGSGINLIKHMKREEMTRNIPVVMLTARGEEEDKVRGLEVGADDYITKPF 107
Query: 146 KLSD-VKRIKDYLTR 159
+ V R+K + R
Sbjct: 108 SPKELVARLKAVIRR 122
>TIGR_CMR|VC_0719 [details] [associations]
symbol:VC_0719 "DNA-binding response regulator PhoB"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
InterPro:IPR001789 InterPro:IPR001867 InterPro:IPR011879
Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110 SMART:SM00448
SMART:SM00862 GO:GO:0006355 GO:GO:0003677 EMBL:AE003852
GenomeReviews:AE003852_GR Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0005622 GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
GO:GO:0006817 HSSP:P08402 KO:K07657 OMA:QVLEMGP TIGRFAMs:TIGR02154
PIR:H82288 RefSeq:NP_230368.1 ProteinModelPortal:Q9KU11 SMR:Q9KU11
DNASU:2615728 GeneID:2615728 KEGG:vch:VC0719 PATRIC:20080557
ProtClustDB:CLSK874084 Uniprot:Q9KU11
Length = 229
Score = 117 (46.2 bits), Expect = 2.3e-05, P = 2.3e-05
Identities = 27/75 (36%), Positives = 43/75 (57%)
Query: 86 DLIITDYCMPGMTGYELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPV 145
DL++ D+ +PG +G L+K +K R IPVV++++ R LE GA+D+I KP
Sbjct: 48 DLVLLDWMLPGGSGINLIKHMKREEMTRNIPVVMLTARGEEEDKVRGLEVGADDYITKPF 107
Query: 146 KLSD-VKRIKDYLTR 159
+ V R+K + R
Sbjct: 108 SPKELVARLKAVIRR 122
>UNIPROTKB|Q4K714 [details] [associations]
symbol:PFL_4888 "Sigma-54 dependent DNA-binding response
regulator" species:220664 "Pseudomonas protegens Pf-5" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0005524 "ATP binding" evidence=ISS] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=ISS] [GO:0035556
"intracellular signal transduction" evidence=ISS]
InterPro:IPR001789 InterPro:IPR002078 InterPro:IPR002197
InterPro:IPR003593 InterPro:IPR009057 Pfam:PF00072 Pfam:PF00158
Pfam:PF02954 PRINTS:PR01590 PROSITE:PS50045 PROSITE:PS50110
SMART:SM00382 SMART:SM00448 GO:GO:0005524 GO:GO:0006355
GO:GO:0003677 GO:GO:0003700 GO:GO:0006351 GO:GO:0005622
Gene3D:1.10.10.60 SUPFAM:SSF46689 EMBL:CP000076
GenomeReviews:CP000076_GR GO:GO:0017111 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG2204
HOGENOM:HOG000058489 InterPro:IPR025662 InterPro:IPR025943
InterPro:IPR025944 PROSITE:PS00675 PROSITE:PS00676 PROSITE:PS00688
KO:K02481 RefSeq:YP_261969.1 ProteinModelPortal:Q4K714
STRING:Q4K714 GeneID:3479299 KEGG:pfl:PFL_4888 PATRIC:19879244
OMA:CVERATI ProtClustDB:CLSK937927
BioCyc:PFLU220664:GIX8-4929-MONOMER Uniprot:Q4K714
Length = 465
Score = 122 (48.0 bits), Expect = 2.3e-05, P = 2.3e-05
Identities = 39/138 (28%), Positives = 71/138 (51%)
Query: 31 HVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIIT 90
++L VDD ++ L+ + +V +G AL+ L E++ I DL+I+
Sbjct: 4 NLLVVDDEPKLCDLLSSALSQNGIQVFTAGNGLHALKVL---EQEDI--------DLVIS 52
Query: 91 DYCMPGMTGYELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVKLS-- 148
D+ MPGM G +LL +IK ++PV++M++ + + + + +GA D+I KP +
Sbjct: 53 DWRMPGMDGPQLLGEIKQRYP--QLPVIVMTAYSTVKNAVQSMRNGAYDYIAKPFDIDEL 110
Query: 149 DVKRIKDYLTRDVNLGNE 166
D+ K RD+ N+
Sbjct: 111 DITVSKALQFRDILKDNQ 128
>ASPGD|ASPL0000016988 [details] [associations]
symbol:srrC species:162425 "Emericella nidulans"
[GO:0005575 "cellular_component" evidence=ND] [GO:0000156
"phosphorelay response regulator activity" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0000160 "phosphorelay signal transduction system"
evidence=IEA] InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110
SMART:SM00448 GO:GO:0006355 GO:GO:0035556 GO:GO:0005622
EMBL:BN001302 GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
eggNOG:COG0784 EMBL:AACD01000067 RefSeq:XP_661738.1
ProteinModelPortal:Q5B5P6 EnsemblFungi:CADANIAT00004538
GeneID:2873550 KEGG:ani:AN4134.2 HOGENOM:HOG000200821
OrthoDB:EOG412QGQ Uniprot:Q5B5P6
Length = 171
Score = 112 (44.5 bits), Expect = 2.5e-05, P = 2.5e-05
Identities = 34/138 (24%), Positives = 68/138 (49%)
Query: 30 VHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLII 89
+H+L +D+ V++K++ RLL SC V+ +G+ AL +L S + + D+I+
Sbjct: 2 MHILVAEDNKVNQKLVTRLLQRLSCTVSIAHNGQEALDYL------SASPATHHRPDVIL 55
Query: 90 TDYCMPGMTGYELLKKIKDS------SALREIPVVIMS--SENILARIDRCLEDGAEDFI 141
D MP M G ++ S + P++ M+ S + + + L+ G +D +
Sbjct: 56 MDTAMPVMDGIRATSILRTSLPFTVDPKIPTTPIIAMTPISLRVPGQTEEWLKRGFDDVL 115
Query: 142 VKPVKLSDVKRIKDYLTR 159
KP +L ++ + Y ++
Sbjct: 116 PKPFRLETLRMMLLYWSK 133
>TIGR_CMR|CPS_2387 [details] [associations]
symbol:CPS_2387 "DNA-binding response regulator"
species:167879 "Colwellia psychrerythraea 34H" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0003677 "DNA binding" evidence=ISS] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=ISS] InterPro:IPR001789
InterPro:IPR001867 InterPro:IPR016032 Pfam:PF00072 Pfam:PF00486
PROSITE:PS50110 SMART:SM00448 SMART:SM00862 GO:GO:0006355
GO:GO:0035556 GO:GO:0003677 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0006351 GO:GO:0005622 EMBL:CP000083 GenomeReviews:CP000083_GR
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG0745
HOGENOM:HOG000034819 SUPFAM:SSF46894 KO:K02483 RefSeq:YP_269105.1
ProteinModelPortal:Q482B3 STRING:Q482B3 GeneID:3521255
KEGG:cps:CPS_2387 PATRIC:21467857
BioCyc:CPSY167879:GI48-2450-MONOMER Uniprot:Q482B3
Length = 236
Score = 117 (46.2 bits), Expect = 2.5e-05, P = 2.5e-05
Identities = 41/129 (31%), Positives = 69/129 (53%)
Query: 31 HVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIIT 90
H+L VDD+ R+ + R L +VT+VD G+ + L + S+ +DLI+
Sbjct: 3 HILIVDDNPDIRQPLARYLGDHGMRVTSVDGGKAMRETL----KNSV-------IDLILL 51
Query: 91 DYCMPGMTGYELLKKIKDSSALREIPVVIMSSENILARIDRC--LEDGAEDFIVKP---- 144
D MPG G L + ++ S L+ IPV+++++ + DR LE GA+D++ KP
Sbjct: 52 DIMMPGEDGLSLCRFVQ--SNLK-IPVILLTA--LTEDTDRVVGLEMGADDYVAKPFNPR 106
Query: 145 VKLSDVKRI 153
V L+ +K +
Sbjct: 107 VLLAKIKAV 115
>TIGR_CMR|BA_5581 [details] [associations]
symbol:BA_5581 "stage 0 sporulation protein F"
species:198094 "Bacillus anthracis str. Ames" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=ISS] [GO:0030436 "asexual sporulation" evidence=ISS]
InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110 SMART:SM00448
GO:GO:0006355 GO:GO:0035556 EMBL:AE016879 EMBL:AE017334
EMBL:AE017225 GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0016740 GO:GO:0005622 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034820 KO:K02490
ProtClustDB:CLSK873695 RefSeq:NP_847737.1 RefSeq:YP_022251.1
RefSeq:YP_031424.1 HSSP:P06628 ProteinModelPortal:Q81JW3 SMR:Q81JW3
DNASU:1085276 EnsemblBacteria:EBBACT00000010293
EnsemblBacteria:EBBACT00000016210 EnsemblBacteria:EBBACT00000023627
GeneID:1085276 GeneID:2814845 GeneID:2853145 KEGG:ban:BA_5581
KEGG:bar:GBAA_5581 KEGG:bat:BAS5185 OMA:EADGAMD
BioCyc:BANT260799:GJAJ-5260-MONOMER
BioCyc:BANT261594:GJ7F-5440-MONOMER Uniprot:Q81JW3
Length = 122
Score = 101 (40.6 bits), Expect = 2.6e-05, P = 2.6e-05
Identities = 26/89 (29%), Positives = 44/89 (49%)
Query: 70 GLDEEQSINGFDGLKV------DLIITDYCMPGMTGYELLKKIKDSSALREIPVVIMSSE 123
G Q+ NGF L + DL++ D +PGM G E+LK +K+ I V++M++
Sbjct: 26 GYQTFQAANGFQALDIVKKDNPDLVVLDMKIPGMDGIEILKHVKEID--ESIKVILMTAY 83
Query: 124 NILARIDRCLEDGAEDFIVKPVKLSDVKR 152
L I + GA KP + ++++
Sbjct: 84 GELDMIQEAKDLGALMHFAKPFDIDEIRQ 112
>UNIPROTKB|Q4K4R2 [details] [associations]
symbol:creB "DNA-binding response regulator CreB"
species:220664 "Pseudomonas protegens Pf-5" [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] InterPro:IPR001789 InterPro:IPR001867
Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110 SMART:SM00448
SMART:SM00862 GO:GO:0035556 GO:GO:0003677 GO:GO:0003700
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005622 EMBL:CP000076
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG0745
HOGENOM:HOG000034819 KO:K07663 ProtClustDB:PRK11083
RefSeq:YP_262771.2 ProteinModelPortal:Q4K4R2 GeneID:3480085
KEGG:pfl:PFL_5713 PATRIC:19880927
BioCyc:PFLU220664:GIX8-5753-MONOMER Uniprot:Q4K4R2
Length = 226
Score = 116 (45.9 bits), Expect = 2.9e-05, P = 2.9e-05
Identities = 43/134 (32%), Positives = 65/134 (48%)
Query: 31 HVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIIT 90
H+L V+D + L T + GR AL E Q + DLII
Sbjct: 3 HILIVEDEAAIADTLIFALQGEGFTTTWLSLGRAAL------EHQQAS-----PADLIIL 51
Query: 91 DYCMPGMTGYELLKKIKDSSALREIPVVIMSSENILARIDRC--LEDGAEDFIVKPVKLS 148
D +P ++G+E K+++ S E+PV+ +S+ + IDR LE GA+D++VKP
Sbjct: 52 DIGLPDISGFETCKQLRRFS---EVPVMFLSARD--GEIDRVVGLEIGADDYVVKPFSPR 106
Query: 149 DVK-RIKDYLTRDV 161
+V R+K L R V
Sbjct: 107 EVAARVKAILKRMV 120
>TIGR_CMR|DET_0170 [details] [associations]
symbol:DET_0170 "DNA-binding response regulator"
species:243164 "Dehalococcoides ethenogenes 195" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=ISS] InterPro:IPR001789 InterPro:IPR001867 Pfam:PF00072
Pfam:PF00486 PROSITE:PS50110 SMART:SM00448 SMART:SM00862
GO:GO:0006355 GO:GO:0035556 GO:GO:0003677 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0005622 EMBL:CP000027
GenomeReviews:CP000027_GR GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 eggNOG:COG0745 HOGENOM:HOG000034819
RefSeq:YP_180918.1 ProteinModelPortal:Q3ZA31 STRING:Q3ZA31
GeneID:3230558 KEGG:det:DET0170 PATRIC:21607423 OMA:RIRVNIR
ProtClustDB:CLSK741609 BioCyc:DETH243164:GJNF-170-MONOMER
Uniprot:Q3ZA31
Length = 232
Score = 116 (45.9 bits), Expect = 3.2e-05, P = 3.2e-05
Identities = 28/72 (38%), Positives = 47/72 (65%)
Query: 84 KVDLIITDYCMPGMTGYELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVK 143
K D II D +P ++GYE+L++I+ S E+PV+I++ N + I + L GA+D++VK
Sbjct: 46 KPDAIILDIGLPDISGYEVLRQIRLFS---ELPVIILTIRNEESDIVKALSLGADDYLVK 102
Query: 144 PVKLSDV-KRIK 154
P + ++ RIK
Sbjct: 103 PFRQMELLARIK 114
>UNIPROTKB|Q9KPC0 [details] [associations]
symbol:VC_2453 "Sensor histidine kinase/response regulator"
species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0000155 "phosphorelay sensor kinase activity" evidence=ISS]
[GO:0000156 "phosphorelay response regulator activity"
evidence=ISS] [GO:0000160 "phosphorelay signal transduction system"
evidence=ISS] [GO:0023014 "signal transduction by phosphorylation"
evidence=ISS] [GO:0035556 "intracellular signal transduction"
evidence=ISS] InterPro:IPR001789 InterPro:IPR003594
InterPro:IPR003660 InterPro:IPR003661 InterPro:IPR004358
InterPro:IPR008207 InterPro:IPR009082 Pfam:PF00072 Pfam:PF00512
Pfam:PF00672 Pfam:PF01627 Pfam:PF02518 PRINTS:PR00344
PROSITE:PS50110 PROSITE:PS50885 PROSITE:PS50894 SMART:SM00073
SMART:SM00304 SMART:SM00387 SMART:SM00388 SMART:SM00448
InterPro:IPR005467 GO:GO:0016021 GO:GO:0005524 GO:GO:0006355
EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0005622 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 GO:GO:0000155
Gene3D:1.10.287.130 Gene3D:3.30.565.10 SUPFAM:SSF55874
SUPFAM:SSF47384 PROSITE:PS50109 Gene3D:1.20.120.160 SUPFAM:SSF47226
KO:K07678 OMA:ANQVISQ ProtClustDB:PRK11107 InterPro:IPR019247
Pfam:PF09984 HSSP:Q9A5I4 PIR:B82075 RefSeq:NP_232082.1
ProteinModelPortal:Q9KPC0 DNASU:2612995 GeneID:2612995
KEGG:vch:VC2453 PATRIC:20083927 Uniprot:Q9KPC0
Length = 927
Score = 124 (48.7 bits), Expect = 3.3e-05, P = 3.3e-05
Identities = 35/115 (30%), Positives = 59/115 (51%)
Query: 32 VLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITD 91
V+AVDD+ + K+I LL V + SG+ A++ + QS + D+I+ D
Sbjct: 667 VMAVDDNPANLKLITALLQERVEYVVSCTSGQEAIE-----QAQS------RQFDIILMD 715
Query: 92 YCMPGMTGYELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVK 146
MP M G K IK R+ PV+ +++ + DR L+ G +D++ KP++
Sbjct: 716 IQMPHMDGVTACKAIKQLKGYRDTPVIAVTAHAMAGERDRLLKAGMDDYLTKPIE 770
>TIGR_CMR|VC_2453 [details] [associations]
symbol:VC_2453 "sensor histidine kinase/response regulator"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0000155
"phosphorelay sensor kinase activity" evidence=ISS] [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
InterPro:IPR001789 InterPro:IPR003594 InterPro:IPR003660
InterPro:IPR003661 InterPro:IPR004358 InterPro:IPR008207
InterPro:IPR009082 Pfam:PF00072 Pfam:PF00512 Pfam:PF00672
Pfam:PF01627 Pfam:PF02518 PRINTS:PR00344 PROSITE:PS50110
PROSITE:PS50885 PROSITE:PS50894 SMART:SM00073 SMART:SM00304
SMART:SM00387 SMART:SM00388 SMART:SM00448 InterPro:IPR005467
GO:GO:0016021 GO:GO:0005524 GO:GO:0006355 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0005622 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 GO:GO:0000155
Gene3D:1.10.287.130 Gene3D:3.30.565.10 SUPFAM:SSF55874
SUPFAM:SSF47384 PROSITE:PS50109 Gene3D:1.20.120.160 SUPFAM:SSF47226
KO:K07678 OMA:ANQVISQ ProtClustDB:PRK11107 InterPro:IPR019247
Pfam:PF09984 HSSP:Q9A5I4 PIR:B82075 RefSeq:NP_232082.1
ProteinModelPortal:Q9KPC0 DNASU:2612995 GeneID:2612995
KEGG:vch:VC2453 PATRIC:20083927 Uniprot:Q9KPC0
Length = 927
Score = 124 (48.7 bits), Expect = 3.3e-05, P = 3.3e-05
Identities = 35/115 (30%), Positives = 59/115 (51%)
Query: 32 VLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITD 91
V+AVDD+ + K+I LL V + SG+ A++ + QS + D+I+ D
Sbjct: 667 VMAVDDNPANLKLITALLQERVEYVVSCTSGQEAIE-----QAQS------RQFDIILMD 715
Query: 92 YCMPGMTGYELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVK 146
MP M G K IK R+ PV+ +++ + DR L+ G +D++ KP++
Sbjct: 716 IQMPHMDGVTACKAIKQLKGYRDTPVIAVTAHAMAGERDRLLKAGMDDYLTKPIE 770
>UNIPROTKB|Q9KS62 [details] [associations]
symbol:VC_1398 "Chemotaxis protein CheY" species:243277
"Vibrio cholerae O1 biovar El Tor str. N16961" [GO:0004871 "signal
transducer activity" evidence=ISS] [GO:0006935 "chemotaxis"
evidence=ISS] InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110
SMART:SM00448 GO:GO:0006355 GO:GO:0035556 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0005622 GO:GO:0006935 GO:GO:0004871
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172 KO:K03413
OMA:AGANFYL HSSP:P06143 PIR:F82205 RefSeq:NP_231041.1
ProteinModelPortal:Q9KS62 DNASU:2614030 GeneID:2614030
KEGG:vch:VC1398 PATRIC:20081860 ProtClustDB:CLSK794124
Uniprot:Q9KS62
Length = 124
Score = 100 (40.3 bits), Expect = 3.4e-05, P = 3.4e-05
Identities = 27/93 (29%), Positives = 53/93 (56%)
Query: 66 LQFLGLDEEQSINGFDGLK------VDLIITDYCMPGMTGYELLKKIKDSSALREIPVVI 119
L+ +G+ ++ NG + L+ VDL + D MP M G+ L+++I+ L IP V+
Sbjct: 22 LEEIGIFILEASNGVEALERALEMPVDLFLVDINMPKMDGFTLVREIRCRPELAGIPTVM 81
Query: 120 MSSENILARIDRCLEDGAEDFIVKPVKLSDVKR 152
+S+E+ + + + GA ++VKPV ++++
Sbjct: 82 ISTESQESDRQQGIHMGANLYMVKPVNPEELQQ 114
>TIGR_CMR|SPO_1023 [details] [associations]
symbol:SPO_1023 "response regulator" species:246200
"Ruegeria pomeroyi DSS-3" [GO:0000156 "phosphorelay response
regulator activity" evidence=ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=ISS] InterPro:IPR001789 Pfam:PF00072
PROSITE:PS50110 SMART:SM00448 GO:GO:0006355 GO:GO:0035556
EMBL:CP000031 GenomeReviews:CP000031_GR GO:GO:0005622 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034820
RefSeq:YP_166275.1 ProteinModelPortal:Q5LUN0 GeneID:3195651
KEGG:sil:SPO1023 PATRIC:23375339 OMA:AGVSRFM ProtClustDB:CLSK933415
Uniprot:Q5LUN0
Length = 126
Score = 100 (40.3 bits), Expect = 3.4e-05, P = 3.4e-05
Identities = 24/96 (25%), Positives = 52/96 (54%)
Query: 65 ALQFL----GLDEEQSINGFDGLKV------DLIITDYCMPGMTGYELLKKIKDSSALRE 114
A++FL G E +G D + + DL+I D +PG +G ++L+++++ +A ++
Sbjct: 17 AIRFLLSRDGWQVETHADGADAVDIITTALPDLVILDVMLPGKSGMDILRELREQAATQD 76
Query: 115 IPVVIMSSENILARIDRCLEDGAEDFIVKPVKLSDV 150
+PV+++++ D + G F+ KP ++V
Sbjct: 77 LPVLMLTARGQSRDRDMAEKAGVSRFMTKPFSNTEV 112
>TIGR_CMR|VC_1398 [details] [associations]
symbol:VC_1398 "chemotaxis protein CheY" species:686
"Vibrio cholerae O1 biovar El Tor" [GO:0004871 "signal transducer
activity" evidence=ISS] [GO:0006935 "chemotaxis" evidence=ISS]
InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110 SMART:SM00448
GO:GO:0006355 GO:GO:0035556 EMBL:AE003852 GenomeReviews:AE003852_GR
GO:GO:0005622 GO:GO:0006935 GO:GO:0004871 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 KO:K03413 OMA:AGANFYL
HSSP:P06143 PIR:F82205 RefSeq:NP_231041.1 ProteinModelPortal:Q9KS62
DNASU:2614030 GeneID:2614030 KEGG:vch:VC1398 PATRIC:20081860
ProtClustDB:CLSK794124 Uniprot:Q9KS62
Length = 124
Score = 100 (40.3 bits), Expect = 3.4e-05, P = 3.4e-05
Identities = 27/93 (29%), Positives = 53/93 (56%)
Query: 66 LQFLGLDEEQSINGFDGLK------VDLIITDYCMPGMTGYELLKKIKDSSALREIPVVI 119
L+ +G+ ++ NG + L+ VDL + D MP M G+ L+++I+ L IP V+
Sbjct: 22 LEEIGIFILEASNGVEALERALEMPVDLFLVDINMPKMDGFTLVREIRCRPELAGIPTVM 81
Query: 120 MSSENILARIDRCLEDGAEDFIVKPVKLSDVKR 152
+S+E+ + + + GA ++VKPV ++++
Sbjct: 82 ISTESQESDRQQGIHMGANLYMVKPVNPEELQQ 114
>TIGR_CMR|CPS_4164 [details] [associations]
symbol:CPS_4164 "response regulator/phosphatase"
species:167879 "Colwellia psychrerythraea 34H" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0016791 "phosphatase activity" evidence=ISS] InterPro:IPR001789
InterPro:IPR003607 InterPro:IPR006674 Pfam:PF00072 Pfam:PF01966
PROSITE:PS50110 SMART:SM00448 SMART:SM00471 GO:GO:0006355
GO:GO:0035556 GO:GO:0046872 GO:GO:0008152 GO:GO:0005622
EMBL:CP000083 GenomeReviews:CP000083_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 GO:GO:0008081 eggNOG:COG3437
Gene3D:1.10.3210.10 HOGENOM:HOG000266481 RefSeq:YP_270816.1
ProteinModelPortal:Q47WK6 STRING:Q47WK6 GeneID:3518511
KEGG:cps:CPS_4164 PATRIC:21471189 OMA:CELIYNA
BioCyc:CPSY167879:GI48-4174-MONOMER Uniprot:Q47WK6
Length = 352
Score = 119 (46.9 bits), Expect = 3.5e-05, P = 3.5e-05
Identities = 43/156 (27%), Positives = 75/156 (48%)
Query: 26 DTEEVHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKV 85
D ++ VL VDD+ + V+ +L KV A +G AL+ K
Sbjct: 10 DGDKATVLIVDDNSDNLDVLSGVLR-PFYKVKAAINGELALKVASAKN----------KP 58
Query: 86 DLIITDYCMPGMTGYELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPV 145
D+I+ D MPGM GYE+ +++K + + IPV+ ++++ + + GA D+I KP+
Sbjct: 59 DIILLDIMMPGMDGYEVCQQLKLNPSTANIPVIFVTAKTETKDEEAGFKLGAVDYITKPI 118
Query: 146 KLSDV-KRIKDYLTRDVNLGNEGRGINKRKARESCD 180
+ V R++ L N E + K++ +E D
Sbjct: 119 SVPIVLARVRAQLAL-YNQQRELEILVKQRTKELDD 153
>TIGR_CMR|GSU_0149 [details] [associations]
symbol:GSU_0149 "sensor histidine kinase/response
regulator" species:243231 "Geobacter sulfurreducens PCA"
[GO:0000155 "phosphorelay sensor kinase activity" evidence=ISS]
[GO:0000156 "phosphorelay response regulator activity"
evidence=ISS] [GO:0000160 "phosphorelay signal transduction system"
evidence=ISS] InterPro:IPR001789 InterPro:IPR003594
InterPro:IPR003661 InterPro:IPR004358 InterPro:IPR009082
Pfam:PF00072 Pfam:PF00512 Pfam:PF02518 PRINTS:PR00344
PROSITE:PS50110 SMART:SM00387 SMART:SM00388 SMART:SM00448
InterPro:IPR005467 GO:GO:0005524 GO:GO:0016020 GO:GO:0006355
GO:GO:0035556 GO:GO:0005622 EMBL:AE017180 GenomeReviews:AE017180_GR
GO:GO:0023014 GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
GO:GO:0000155 Gene3D:1.10.287.130 Gene3D:3.30.565.10
SUPFAM:SSF55874 PROSITE:PS50109 HSSP:P06143 RefSeq:NP_951211.1
ProteinModelPortal:Q74GU5 GeneID:2687911 KEGG:gsu:GSU0149
PATRIC:22023046 HOGENOM:HOG000135524 OMA:ISHKFRT
ProtClustDB:CLSK827668 BioCyc:GSUL243231:GH27-183-MONOMER
Uniprot:Q74GU5
Length = 371
Score = 119 (46.9 bits), Expect = 3.9e-05, P = 3.9e-05
Identities = 39/124 (31%), Positives = 62/124 (50%)
Query: 32 VLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITD 91
+L VDD V R + + L G R LQ G D E+++ F+ +D+I+TD
Sbjct: 16 ILVVDDESVIRDLCAKAL-----------KGYRVLQ-AG-DGEEALRLFERGGIDVILTD 62
Query: 92 YCMPGMTGYELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVKLSDVK 151
MP + G ELL+++K+ + V++M+ I L+ A+DFI KP+ L +K
Sbjct: 63 VMMPKLNGIELLRRLKEMEPT--LVVIVMTGYAEKDIILNALKADADDFITKPLNLLQLK 120
Query: 152 RIKD 155
D
Sbjct: 121 TAVD 124
>TIGR_CMR|BA_3261 [details] [associations]
symbol:BA_3261 "DNA-binding response regulator"
species:198094 "Bacillus anthracis str. Ames" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] InterPro:IPR001789 InterPro:IPR001867
Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110 SMART:SM00448
SMART:SM00862 GO:GO:0006355 GO:GO:0035556 EMBL:AE016879
EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003677
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005622 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034819 HSSP:P08402
RefSeq:NP_845560.1 RefSeq:YP_019897.1 RefSeq:YP_029285.1
ProteinModelPortal:Q81NE3 DNASU:1089115
EnsemblBacteria:EBBACT00000011389 EnsemblBacteria:EBBACT00000014025
EnsemblBacteria:EBBACT00000020758 GeneID:1089115 GeneID:2818827
GeneID:2853015 KEGG:ban:BA_3261 KEGG:bar:GBAA_3261 KEGG:bat:BAS3028
OMA:FELCKKM ProtClustDB:CLSK916983
BioCyc:BANT260799:GJAJ-3090-MONOMER
BioCyc:BANT261594:GJ7F-3193-MONOMER Uniprot:Q81NE3
Length = 225
Score = 115 (45.5 bits), Expect = 4.0e-05, P = 4.0e-05
Identities = 37/131 (28%), Positives = 69/131 (52%)
Query: 30 VHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLII 89
+H+L DD R+++ L KV + G+ A + L E+++I+ L I
Sbjct: 4 IHILLADDDKHIRELLHYHLQKEGFKVFEAEDGKVAQEVL---EKENIH--------LAI 52
Query: 90 TDYCMPGMTGYELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVKLSD 149
D MP + GY L ++I+ +IPV+++++++ L ++ G +D+IVKP + ++
Sbjct: 53 VDIMMPFVDGYTLCEEIRK---YHDIPVILLTAKDQLVDKEKGFISGTDDYIVKPFEPAE 109
Query: 150 VK-RIKDYLTR 159
V R+K L R
Sbjct: 110 VIFRMKALLRR 120
>UNIPROTKB|Q50806 [details] [associations]
symbol:trcR "Response regulator homolog TrcR" species:1773
"Mycobacterium tuberculosis" [GO:0003677 "DNA binding"
evidence=IDA] [GO:0045892 "negative regulation of transcription,
DNA-dependent" evidence=IMP] [GO:0045893 "positive regulation of
transcription, DNA-dependent" evidence=IDA] InterPro:IPR001789
InterPro:IPR001867 Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110
SMART:SM00448 SMART:SM00862 GO:GO:0045892 GO:GO:0045893
GenomeReviews:AL123456_GR GO:GO:0035556 GO:GO:0003677
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005622 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034815 HSSP:Q9WYN0
EMBL:AL123456 EMBL:U88959 PIR:D70624 RefSeq:NP_215549.1
RefSeq:YP_006514396.1 SMR:Q50806 EnsemblBacteria:EBMYCT00000001946
GeneID:13319598 GeneID:887957 KEGG:mtu:Rv1033c KEGG:mtv:RVBD_1033c
PATRIC:18150824 TubercuList:Rv1033c KO:K07672 OMA:IAHNGRE
ProtClustDB:CLSK790905 Uniprot:Q50806
Length = 257
Score = 116 (45.9 bits), Expect = 4.2e-05, P = 4.2e-05
Identities = 25/94 (26%), Positives = 56/94 (59%)
Query: 72 DEEQSINGFDGLKVDLIITDYCMPGMTGYELLKKIKDSSALREIPVVIMSS-ENILARID 130
D +++I FD + D+++ D +P + G E+L+++++S P + +++ ++++ R+
Sbjct: 63 DGQEAIAKFDKVGPDVLVLDIMLPDVDGLEILRRVRESDVYT--PTLFLTARDSVMDRVT 120
Query: 131 RCLEDGAEDFIVKPVKLSD-VKRIKDYLTRDVNL 163
L GA+D++ KP L + V R++ L R +L
Sbjct: 121 G-LTSGADDYMTKPFSLEELVARLRGLLRRSSHL 153
>TIGR_CMR|BA_1497 [details] [associations]
symbol:BA_1497 "DNA-binding response regulator ResD"
species:198094 "Bacillus anthracis str. Ames" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] [GO:0009060 "aerobic respiration"
evidence=ISS] [GO:0009061 "anaerobic respiration" evidence=ISS]
InterPro:IPR001789 InterPro:IPR001867 Pfam:PF00072 Pfam:PF00486
PROSITE:PS50110 SMART:SM00448 SMART:SM00862 GO:GO:0006355
GO:GO:0035556 EMBL:AE016879 EMBL:AE017334 EMBL:AE017225
GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0003677 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0005622 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 HOGENOM:HOG000034819 HSSP:P08402 RefSeq:NP_843949.1
RefSeq:YP_018120.1 RefSeq:YP_027655.1 ProteinModelPortal:Q81SZ6
DNASU:1087158 EnsemblBacteria:EBBACT00000009602
EnsemblBacteria:EBBACT00000013896 EnsemblBacteria:EBBACT00000020931
GeneID:1087158 GeneID:2818509 GeneID:2850870 KEGG:ban:BA_1497
KEGG:bar:GBAA_1497 KEGG:bat:BAS1386 KO:K07775 OMA:VWHYEFF
ProtClustDB:CLSK873069 BioCyc:BANT260799:GJAJ-1460-MONOMER
BioCyc:BANT261594:GJ7F-1522-MONOMER Uniprot:Q81SZ6
Length = 238
Score = 115 (45.5 bits), Expect = 4.7e-05, P = 4.7e-05
Identities = 37/134 (27%), Positives = 64/134 (47%)
Query: 29 EVHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLI 88
E +L VDD R++++ L + D+G AL+ + L + DLI
Sbjct: 4 ESRILIVDDEDRIRRLLKMYLEREQYTIEEADNGDTALE-MALQNDY----------DLI 52
Query: 89 ITDYCMPGMTGYELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVKLS 148
+ D MPG G E+ K +++ A P+++++++ + E G +D+IVKP
Sbjct: 53 LLDLMMPGKDGIEVCKGVREKKAT---PIIMLTAKGEEVNRVQGFEVGTDDYIVKPFSPR 109
Query: 149 DVK-RIKDYLTRDV 161
+V R+K L R V
Sbjct: 110 EVVLRVKAVLRRSV 123
>TIGR_CMR|DET_0177 [details] [associations]
symbol:DET_0177 "DNA-binding response regulator"
species:243164 "Dehalococcoides ethenogenes 195" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=ISS] InterPro:IPR001789 InterPro:IPR001867 Pfam:PF00072
Pfam:PF00486 PROSITE:PS50110 SMART:SM00448 SMART:SM00862
GO:GO:0006355 GO:GO:0035556 GO:GO:0003677 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0005622 EMBL:CP000027
GenomeReviews:CP000027_GR GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 eggNOG:COG0745 HOGENOM:HOG000034815
RefSeq:YP_180925.1 ProteinModelPortal:Q3ZA24 STRING:Q3ZA24
GeneID:3230544 KEGG:det:DET0177 PATRIC:21607433 OMA:CIIKNEA
ProtClustDB:CLSK837633 BioCyc:DETH243164:GJNF-177-MONOMER
Uniprot:Q3ZA24
Length = 226
Score = 114 (45.2 bits), Expect = 5.4e-05, P = 5.4e-05
Identities = 34/136 (25%), Positives = 72/136 (52%)
Query: 30 VHVLAVDDSFVDRKVIERLLTIS--SCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDL 87
+++L V+D+ I +L +S K+T +G A++ S+N D K DL
Sbjct: 1 MNILIVEDNDAAASTISSILRLSYHDAKITVCRTGYEAVE--------SVNS-D--KADL 49
Query: 88 IITDYCMPGMTGYELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVK- 146
++ D +P M G ++L +I + P++++++ + + LE GA+++I KP +
Sbjct: 50 VLLDLGLPDMNGLKVLDEIHPITGA---PIIVVTACEDEENVLKALEQGADEYITKPFRH 106
Query: 147 LSDVKRIKDYLTRDVN 162
L + R+K L+++++
Sbjct: 107 LEFLARVKKALSKNIS 122
>TIGR_CMR|GSU_1891 [details] [associations]
symbol:GSU_1891 "response regulator" species:243231
"Geobacter sulfurreducens PCA" [GO:0000156 "phosphorelay response
regulator activity" evidence=ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=ISS] InterPro:IPR001789
InterPro:IPR003607 InterPro:IPR006674 Pfam:PF00072 Pfam:PF01966
PROSITE:PS50110 SMART:SM00448 SMART:SM00471 GO:GO:0006355
GO:GO:0035556 GO:GO:0046872 GO:GO:0008152 GO:GO:0005622
EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 GO:GO:0008081
Gene3D:1.10.3210.10 HOGENOM:HOG000266481 HSSP:P06143
RefSeq:NP_952940.1 ProteinModelPortal:Q74BY7 GeneID:2688472
KEGG:gsu:GSU1891 PATRIC:22026647 OMA:FATIRTH ProtClustDB:CLSK924546
BioCyc:GSUL243231:GH27-1919-MONOMER Uniprot:Q74BY7
Length = 379
Score = 118 (46.6 bits), Expect = 5.5e-05, P = 5.5e-05
Identities = 24/60 (40%), Positives = 40/60 (66%)
Query: 85 VDLIITDYCMPGMTGYELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKP 144
+D++ITD MP MTG E+L+ I+ S+ ++PV++M+ L+ ++ GA DFI+KP
Sbjct: 51 IDIVITDINMPEMTGIEVLRAIRKSNP--DVPVILMTGYAELSVAVEAIKQGAFDFIIKP 108
>TIGR_CMR|SPO_0132 [details] [associations]
symbol:SPO_0132 "sensor histidine kinase/response
regulator" species:246200 "Ruegeria pomeroyi DSS-3" [GO:0000155
"phosphorelay sensor kinase activity" evidence=ISS] [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
InterPro:IPR001789 InterPro:IPR003594 InterPro:IPR003661
InterPro:IPR004358 InterPro:IPR009082 Pfam:PF00072 Pfam:PF00512
Pfam:PF02518 PRINTS:PR00344 PROSITE:PS50110 SMART:SM00387
SMART:SM00388 SMART:SM00448 InterPro:IPR005467 GO:GO:0005524
GO:GO:0016020 GO:GO:0006355 GO:GO:0035556 EMBL:CP000031
GenomeReviews:CP000031_GR GO:GO:0005622 GO:GO:0023014 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 GO:GO:0000155
Gene3D:1.10.287.130 Gene3D:3.30.565.10 SUPFAM:SSF55874
SUPFAM:SSF47384 PROSITE:PS50109 KO:K00936 RefSeq:YP_165404.1
ProteinModelPortal:Q5LWT5 GeneID:3196450 KEGG:sil:SPO0132
PATRIC:23373509 HOGENOM:HOG000250541 OMA:RRLWHSI
ProtClustDB:CLSK933165 Uniprot:Q5LWT5
Length = 739
Score = 121 (47.7 bits), Expect = 5.9e-05, P = 5.9e-05
Identities = 39/129 (30%), Positives = 67/129 (51%)
Query: 31 HVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIIT 90
HVL VDD V+R ++E+ L +VT SG +AL E+ S D VDL+++
Sbjct: 461 HVLIVDDLAVNRAILEKQLAQLGVRVTCCASGAQAL------EKMS----DC--VDLVLS 508
Query: 91 DYCMPGMTGYELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVKLSDV 150
D+ MP M G EL + ++ + ++P+ ++SS +A D + + KP+ +++
Sbjct: 509 DHNMPEMDGLELAEALR-GAGWSDLPIFLLSSNPGMAHADPAKRH-VQGILQKPIPRAEL 566
Query: 151 -KRIKDYLT 158
R+ D T
Sbjct: 567 FARLSDMRT 575
>TAIR|locus:2084968 [details] [associations]
symbol:EIN4 "ETHYLENE INSENSITIVE 4" species:3702
"Arabidopsis thaliana" [GO:0000155 "phosphorelay sensor kinase
activity" evidence=IEA] [GO:0000156 "phosphorelay response
regulator activity" evidence=IEA] [GO:0000160 "phosphorelay signal
transduction system" evidence=IEA] [GO:0004673 "protein histidine
kinase activity" evidence=IEA;ISS] [GO:0004871 "signal transducer
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0007165 "signal transduction" evidence=IEA]
[GO:0009873 "ethylene mediated signaling pathway" evidence=IEA]
[GO:0004674 "protein serine/threonine kinase activity"
evidence=TAS] [GO:0051740 "ethylene binding" evidence=IDA]
[GO:0005783 "endoplasmic reticulum" evidence=IDA] [GO:0009738
"abscisic acid mediated signaling pathway" evidence=RCA]
[GO:0030968 "endoplasmic reticulum unfolded protein response"
evidence=RCA] [GO:0035556 "intracellular signal transduction"
evidence=RCA] [GO:0004872 "receptor activity" evidence=TAS]
[GO:0010105 "negative regulation of ethylene mediated signaling
pathway" evidence=TAS] InterPro:IPR003018 InterPro:IPR001789
InterPro:IPR003594 InterPro:IPR003661 InterPro:IPR009082
InterPro:IPR014525 Pfam:PF00072 Pfam:PF00512 Pfam:PF01590
PIRSF:PIRSF026389 PROSITE:PS50110 SMART:SM00065 SMART:SM00388
SMART:SM00448 GO:GO:0005783 GO:GO:0016021 GO:GO:0005524
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0009873 GO:GO:0006355
GO:GO:0005789 GO:GO:0046872 GO:GO:0004674 GO:GO:0004872
GO:GO:0023014 eggNOG:COG2202 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 GO:GO:0000155 Gene3D:3.30.565.10 SUPFAM:SSF55874
SUPFAM:SSF47384 PROSITE:PS50109 GO:GO:0010105 EMBL:AC011437
EMBL:AF048982 IPI:IPI00520406 RefSeq:NP_187108.1 RefSeq:NP_974218.1
UniGene:At.21286 HSSP:P49333 ProteinModelPortal:Q9ZTP3 SMR:Q9ZTP3
IntAct:Q9ZTP3 STRING:Q9ZTP3 PaxDb:Q9ZTP3 PRIDE:Q9ZTP3
EnsemblPlants:AT3G04580.1 EnsemblPlants:AT3G04580.2 GeneID:819614
KEGG:ath:AT3G04580 TAIR:At3g04580 HOGENOM:HOG000240343
InParanoid:Q9ZTP3 KO:K14509 OMA:VAISHAS PhylomeDB:Q9ZTP3
ProtClustDB:CLSN2684285 Genevestigator:Q9ZTP3 GO:GO:0051740
Uniprot:Q9ZTP3
Length = 766
Score = 121 (47.7 bits), Expect = 6.2e-05, P = 6.2e-05
Identities = 39/119 (32%), Positives = 57/119 (47%)
Query: 30 VHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLII 89
+ + DD V+R V +RLL C+VTAV SG L L + E S ++I
Sbjct: 642 LRITLADDDDVNRTVTKRLLEKLGCEVTAVSSGFECLNALS-NVEMSYR--------VVI 692
Query: 90 TDYCMPGMTGYELLKKIKDSSALREIPVVIMSSENILARI-DRCLEDGAEDFIVKPVKL 147
D MP M G+E+ KI+ P++I + + + +RCL+ G I KPV L
Sbjct: 693 LDLQMPEMDGFEVAMKIRKFCG-HHWPLIIALTASTEDHVRERCLQMGMNGMIQKPVLL 750
>UNIPROTKB|Q48GB2 [details] [associations]
symbol:PSPPH_3413 "Chemotaxis protein CheV, putative"
species:264730 "Pseudomonas syringae pv. phaseolicola 1448A"
[GO:0004871 "signal transducer activity" evidence=ISS] [GO:0006935
"chemotaxis" evidence=ISS] InterPro:IPR001789 InterPro:IPR002545
Pfam:PF00072 Pfam:PF01584 PROSITE:PS50110 PROSITE:PS50851
SMART:SM00260 SMART:SM00448 GO:GO:0006355 GO:GO:0035556
GO:GO:0005622 GO:GO:0006935 GO:GO:0004871 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 EMBL:CP000058
GenomeReviews:CP000058_GR SUPFAM:SSF50341 eggNOG:COG0835
HOGENOM:HOG000255027 KO:K03415 InterPro:IPR024181 PIRSF:PIRSF002867
RefSeq:YP_275571.1 ProteinModelPortal:Q48GB2 STRING:Q48GB2
GeneID:3556331 KEGG:psp:PSPPH_3413 PATRIC:19976236 OMA:QVSRCLQ
ProtClustDB:CLSK2299194 Uniprot:Q48GB2
Length = 308
Score = 116 (45.9 bits), Expect = 6.4e-05, P = 6.4e-05
Identities = 35/115 (30%), Positives = 61/115 (53%)
Query: 30 VHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFL-GLDEEQSINGFDGLKVDLI 88
+ VL VDDS V RK + R L +V A++ GR+AL +L + E + L ++
Sbjct: 179 MRVLTVDDSSVARKQVSRCLETVGVEVVALNDGRQALDYLLKMVAEGKKPEEEFL---MM 235
Query: 89 ITDYCMPGMTGYELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVK 143
I+D MP M GY L I++ ++++ + + +S + + + GA+DF+ K
Sbjct: 236 ISDIEMPEMDGYTLTAAIRNDPRMQKMHITLHTSLSGVFNQAMVKKVGADDFLAK 290
>ASPGD|ASPL0000049453 [details] [associations]
symbol:tcsB species:162425 "Emericella nidulans"
[GO:0004673 "protein histidine kinase activity" evidence=IGI;ISS]
[GO:0000156 "phosphorelay response regulator activity"
evidence=IGI;ISS] [GO:0007234 "osmosensory signaling via
phosphorelay pathway" evidence=IGI;ISS] [GO:0006468 "protein
phosphorylation" evidence=IGI;ISS] [GO:0005886 "plasma membrane"
evidence=IGI;ISS] [GO:0000155 "phosphorelay sensor kinase activity"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005887 "integral to plasma membrane"
evidence=IEA] [GO:0005034 "osmosensor activity" evidence=IEA]
[GO:0009927 "histidine phosphotransfer kinase activity"
evidence=IEA] [GO:0018106 "peptidyl-histidine phosphorylation"
evidence=IEA] [GO:0006469 "negative regulation of protein kinase
activity" evidence=IEA] [GO:0070795 "positive regulation of
conidiophore development" evidence=IEA] [GO:0070787 "conidiophore
development" evidence=IEA] [GO:0046777 "protein
autophosphorylation" evidence=IEA] InterPro:IPR001789
InterPro:IPR003594 InterPro:IPR003661 InterPro:IPR004358
InterPro:IPR009082 Pfam:PF00072 Pfam:PF00512 Pfam:PF02518
PRINTS:PR00344 PROSITE:PS50110 SMART:SM00387 SMART:SM00388
SMART:SM00448 InterPro:IPR005467 GO:GO:0005524 GO:GO:0005887
GO:GO:0006355 EMBL:BN001307 EMBL:AACD01000029 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG0784 GO:GO:0000155
Gene3D:1.10.287.130 Gene3D:3.30.565.10 SUPFAM:SSF55874
SUPFAM:SSF47384 PROSITE:PS50109 GO:GO:0000161 KO:K11231
OrthoDB:EOG4N8VCT EMBL:AB036054 RefSeq:XP_659404.1
ProteinModelPortal:Q9P4U6 STRING:Q9P4U6
EnsemblFungi:CADANIAT00008448 GeneID:2874961 KEGG:ani:AN1800.2
HOGENOM:HOG000185666 OMA:DQHRILQ Uniprot:Q9P4U6
Length = 1065
Score = 122 (48.0 bits), Expect = 7.0e-05, P = 7.0e-05
Identities = 33/127 (25%), Positives = 63/127 (49%)
Query: 28 EEVHVLAVDDSFVDRKVIERLLTISSC-KVTAVDSGRRALQFLGLDEEQSINGFDGLKVD 86
+++ L +D+ V+++V+ R+L + VT V G+ A + + E+ G D
Sbjct: 931 KKIRALVAEDNVVNQEVVLRMLALEDVYDVTVVKDGQEAYDTVKANMEE------GKVFD 984
Query: 87 LIITDYCMPGMTGYELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVK 146
LI D MP + G E + I+ P+V +S+ + + I C+ G + FI KP++
Sbjct: 985 LIFMDIQMPNLDGIESTRLIRQMGC--SAPIVALSAFSEDSNIKDCMNSGMDMFISKPIR 1042
Query: 147 LSDVKRI 153
+K++
Sbjct: 1043 RPALKQV 1049
>UNIPROTKB|Q9P4U6 [details] [associations]
symbol:tcsB "Two-component system protein B" species:227321
"Aspergillus nidulans FGSC A4" [GO:0000155 "phosphorelay sensor
kinase activity" evidence=IGI] [GO:0000156 "phosphorelay response
regulator activity" evidence=IGI] [GO:0000161 "MAPK cascade
involved in osmosensory signaling pathway" evidence=TAS]
[GO:0005887 "integral to plasma membrane" evidence=NAS] [GO:0023014
"signal transduction by phosphorylation" evidence=IGI]
InterPro:IPR001789 InterPro:IPR003594 InterPro:IPR003661
InterPro:IPR004358 InterPro:IPR009082 Pfam:PF00072 Pfam:PF00512
Pfam:PF02518 PRINTS:PR00344 PROSITE:PS50110 SMART:SM00387
SMART:SM00388 SMART:SM00448 InterPro:IPR005467 GO:GO:0005524
GO:GO:0005887 GO:GO:0006355 EMBL:BN001307 EMBL:AACD01000029
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG0784
GO:GO:0000155 Gene3D:1.10.287.130 Gene3D:3.30.565.10
SUPFAM:SSF55874 SUPFAM:SSF47384 PROSITE:PS50109 GO:GO:0000161
KO:K11231 OrthoDB:EOG4N8VCT EMBL:AB036054 RefSeq:XP_659404.1
ProteinModelPortal:Q9P4U6 STRING:Q9P4U6
EnsemblFungi:CADANIAT00008448 GeneID:2874961 KEGG:ani:AN1800.2
HOGENOM:HOG000185666 OMA:DQHRILQ Uniprot:Q9P4U6
Length = 1065
Score = 122 (48.0 bits), Expect = 7.0e-05, P = 7.0e-05
Identities = 33/127 (25%), Positives = 63/127 (49%)
Query: 28 EEVHVLAVDDSFVDRKVIERLLTISSC-KVTAVDSGRRALQFLGLDEEQSINGFDGLKVD 86
+++ L +D+ V+++V+ R+L + VT V G+ A + + E+ G D
Sbjct: 931 KKIRALVAEDNVVNQEVVLRMLALEDVYDVTVVKDGQEAYDTVKANMEE------GKVFD 984
Query: 87 LIITDYCMPGMTGYELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVK 146
LI D MP + G E + I+ P+V +S+ + + I C+ G + FI KP++
Sbjct: 985 LIFMDIQMPNLDGIESTRLIRQMGC--SAPIVALSAFSEDSNIKDCMNSGMDMFISKPIR 1042
Query: 147 LSDVKRI 153
+K++
Sbjct: 1043 RPALKQV 1049
>UNIPROTKB|Q9KNN9 [details] [associations]
symbol:VC_2692 "Transcriptional regulator CpxR"
species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] InterPro:IPR001789 InterPro:IPR001867
InterPro:IPR016032 Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110
SMART:SM00448 SMART:SM00862 GO:GO:0035556 GO:GO:0003677
EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0003700
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0006351 GO:GO:0005622
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172 SUPFAM:SSF46894
KO:K07662 HSSP:P08402 PIR:B82046 RefSeq:NP_232320.1
ProteinModelPortal:Q9KNN9 DNASU:2615520 GeneID:2615520
KEGG:vch:VC2692 PATRIC:20084402 OMA:HEYGDIK ProtClustDB:CLSK874884
Uniprot:Q9KNN9
Length = 228
Score = 113 (44.8 bits), Expect = 7.3e-05, P = 7.3e-05
Identities = 35/105 (33%), Positives = 59/105 (56%)
Query: 66 LQFLGLDEEQSINGFDGL-----KVDLIITDYCMPGMTGYELLKKIKDSSALREIPVVIM 120
LQ+ G + Q+ +G GL ++DLI+ D MP + G E LK++++ A PV+++
Sbjct: 21 LQYEGFEISQANDGEAGLAAVSDEIDLILLDVMMPKLNGMETLKRLREKWAT---PVLML 77
Query: 121 SSENILARIDRC--LEDGAEDFIVKPVKLSDV-KRIKDYLTRDVN 162
+++ IDR LE GA+D++ KP ++ RI+ L R N
Sbjct: 78 TAKG--EEIDRVIGLELGADDYLPKPFSDRELLARIRAILRRTQN 120
>TIGR_CMR|VC_2692 [details] [associations]
symbol:VC_2692 "transcriptional regulator CpxR" species:686
"Vibrio cholerae O1 biovar El Tor" [GO:0003700 "sequence-specific
DNA binding transcription factor activity" evidence=ISS]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=ISS] InterPro:IPR001789 InterPro:IPR001867
InterPro:IPR016032 Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110
SMART:SM00448 SMART:SM00862 GO:GO:0035556 GO:GO:0003677
EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0003700
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0006351 GO:GO:0005622
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172 SUPFAM:SSF46894
KO:K07662 HSSP:P08402 PIR:B82046 RefSeq:NP_232320.1
ProteinModelPortal:Q9KNN9 DNASU:2615520 GeneID:2615520
KEGG:vch:VC2692 PATRIC:20084402 OMA:HEYGDIK ProtClustDB:CLSK874884
Uniprot:Q9KNN9
Length = 228
Score = 113 (44.8 bits), Expect = 7.3e-05, P = 7.3e-05
Identities = 35/105 (33%), Positives = 59/105 (56%)
Query: 66 LQFLGLDEEQSINGFDGL-----KVDLIITDYCMPGMTGYELLKKIKDSSALREIPVVIM 120
LQ+ G + Q+ +G GL ++DLI+ D MP + G E LK++++ A PV+++
Sbjct: 21 LQYEGFEISQANDGEAGLAAVSDEIDLILLDVMMPKLNGMETLKRLREKWAT---PVLML 77
Query: 121 SSENILARIDRC--LEDGAEDFIVKPVKLSDV-KRIKDYLTRDVN 162
+++ IDR LE GA+D++ KP ++ RI+ L R N
Sbjct: 78 TAKG--EEIDRVIGLELGADDYLPKPFSDRELLARIRAILRRTQN 120
>DICTYBASE|DDB_G0276143 [details] [associations]
symbol:dhkF "histidine kinase F" species:44689
"Dictyostelium discoideum" [GO:0035556 "intracellular signal
transduction" evidence=IEA] [GO:0023014 "signal transduction by
phosphorylation" evidence=IEA] [GO:0016772 "transferase activity,
transferring phosphorus-containing groups" evidence=IEA]
[GO:0016310 "phosphorylation" evidence=IEA] [GO:0016020 "membrane"
evidence=IEA] [GO:0007165 "signal transduction" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0004871
"signal transducer activity" evidence=IEA] [GO:0000160
"phosphorelay signal transduction system" evidence=IEA] [GO:0000156
"phosphorelay response regulator activity" evidence=IEA]
[GO:0000155 "phosphorelay sensor kinase activity" evidence=IEA]
[GO:0004673 "protein histidine kinase activity" evidence=IEA]
[GO:0016740 "transferase activity" evidence=IEA] [GO:0016301
"kinase activity" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000014 InterPro:IPR000700
InterPro:IPR001789 InterPro:IPR003594 InterPro:IPR003661
InterPro:IPR004358 InterPro:IPR009082 Pfam:PF00072 Pfam:PF00512
Pfam:PF02518 PRINTS:PR00344 PROSITE:PS50110 PROSITE:PS50113
SMART:SM00387 SMART:SM00388 SMART:SM00448 InterPro:IPR005467
InterPro:IPR001610 dictyBase:DDB_G0276143 GO:GO:0005524
GO:GO:0016020 GO:GO:0006355 GO:GO:0035556 EMBL:AAFI02000014
GenomeReviews:CM000151_GR GO:GO:0005622 GO:GO:0023014 SMART:SM00086
TIGRFAMs:TIGR00229 GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
HSSP:P39928 GO:GO:0000155 Gene3D:1.10.287.130 Gene3D:3.30.565.10
SUPFAM:SSF55874 SUPFAM:SSF47384 PROSITE:PS50109 eggNOG:COG0642
ProtClustDB:CLSZ2846868 EMBL:AF362368 RefSeq:XP_643349.1
ProteinModelPortal:Q551X9 EnsemblProtists:DDB0185098 GeneID:8620399
KEGG:ddi:DDB_G0276143 InParanoid:Q551X9 OMA:ELEMIEF Uniprot:Q551X9
Length = 1109
Score = 122 (48.0 bits), Expect = 7.4e-05, P = 7.4e-05
Identities = 49/189 (25%), Positives = 79/189 (41%)
Query: 1 MTTTNGVASLRLISDEIDGFDLSPSDTEEVHVLAVDDSFVDRKVIERLLTISSCKVTAVD 60
+ + N V S+ ++ E L +L VDD+ V+RKV+
Sbjct: 898 VNSVNSVNSVNSLNSENSNNSLDVGIRTRPRILLVDDNAVNRKVV--------------- 942
Query: 61 SGRRALQFLGLDEEQSINGFDGLKV------DLIITDYCMPGMTGYELLKKIKDSSALRE 114
+ L+ LG D + + NGF+G ++ +LI D MP G K I+ L
Sbjct: 943 --KLQLKKLGYDCDTATNGFEGFEMQKKDNYELIFMDLNMPLCDGSMASKLIRSHEELNN 1000
Query: 115 IP----VVIMSSENILARIDRCLEDGAEDFIVKPVKLSDV-KRIKDYLTRDVNLGNEGRG 169
+V +S+ + D C+ G +DF+VKP+KL + + +K YL + N N
Sbjct: 1001 YKSRANIVGLSATYLHGSKDYCVSMGMDDFVVKPLKLQPLGELVKKYLEVENNNNNNNNN 1060
Query: 170 INKRKARES 178
N S
Sbjct: 1061 NNNNNNNNS 1069
>TIGR_CMR|GSU_1658 [details] [associations]
symbol:GSU_1658 "response regulator/GGDEF domain protein"
species:243231 "Geobacter sulfurreducens PCA" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
InterPro:IPR001054 InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110
SMART:SM00448 Pfam:PF00990 GO:GO:0006355 GO:GO:0005622
EMBL:AE017180 GenomeReviews:AE017180_GR SUPFAM:SSF55073
GO:GO:0016849 GO:GO:0009190 InterPro:IPR000160 SMART:SM00267
TIGRFAMs:TIGR00254 PROSITE:PS50887 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 KO:K02488 HSSP:P06143 RefSeq:NP_952709.1
ProteinModelPortal:Q74CL4 GeneID:2685291 KEGG:gsu:GSU1658
PATRIC:22026165 HOGENOM:HOG000131459 OMA:NINFLEE
ProtClustDB:CLSK924527 BioCyc:GSUL243231:GH27-1650-MONOMER
Uniprot:Q74CL4
Length = 458
Score = 118 (46.6 bits), Expect = 7.4e-05, P = 7.4e-05
Identities = 36/120 (30%), Positives = 60/120 (50%)
Query: 32 VLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITD 91
+L V+D R++ LL +V V SG L+ L E+Q + L+ITD
Sbjct: 4 ILVVEDDRFFRQMYVDLLKEEGYEVDTVASGTEGLKRL---EKQEYH--------LVITD 52
Query: 92 YCMPGMTGYELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVKLSDVK 151
MPGM+G E+L ++K + + V++++ L L++GA D+I+KP + K
Sbjct: 53 LVMPGMSGIEVLSRVKQKAP--NVDVILVTGHANLESAVYALKNGARDYILKPFNHDEFK 110
>TIGR_CMR|GSU_1320 [details] [associations]
symbol:GSU_1320 "sigma-54 dependent DNA-binding response
regulator" species:243231 "Geobacter sulfurreducens PCA"
[GO:0000156 "phosphorelay response regulator activity"
evidence=ISS] [GO:0000160 "phosphorelay signal transduction system"
evidence=ISS] InterPro:IPR001789 InterPro:IPR002078
InterPro:IPR002197 InterPro:IPR003593 InterPro:IPR009057
Pfam:PF00072 Pfam:PF00158 Pfam:PF02954 PRINTS:PR01590
PROSITE:PS50045 PROSITE:PS50110 SMART:SM00382 SMART:SM00448
GO:GO:0005524 GO:GO:0035556 GO:GO:0003677 GO:GO:0003700
GO:GO:0006351 GO:GO:0005622 Gene3D:1.10.10.60 SUPFAM:SSF46689
EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0017111 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000058489
InterPro:IPR025662 InterPro:IPR025943 InterPro:IPR025944
PROSITE:PS00675 PROSITE:PS00676 PROSITE:PS00688 KO:K02481
HSSP:P06143 RefSeq:NP_952373.2 GeneID:2686471 KEGG:gsu:GSU1320
PATRIC:22025417 ProtClustDB:CLSK828298
BioCyc:GSUL243231:GH27-1307-MONOMER Uniprot:Q74DJ6
Length = 461
Score = 118 (46.6 bits), Expect = 7.5e-05, P = 7.5e-05
Identities = 43/148 (29%), Positives = 66/148 (44%)
Query: 26 DTEEVHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKV 85
+ + VL VDD R+V+E L V SG L+ FD
Sbjct: 5 ERQPARVLIVDDDVSLRRVLEYNLQEEGYDVITAGSGEEGLRL-----------FDERSP 53
Query: 86 DLIITDYCMPGMTGYELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPV 145
L++TD MPGM G+ LL++IK S + +VI + + +D ++ GA D+I KP
Sbjct: 54 ALVVTDLKMPGMGGFRLLQEIKGRSPDTAV-IVITAFGAVETAVD-AMKAGAYDYITKPF 111
Query: 146 KLSDVK-RIKDYLTRDVNLGNEGRGINK 172
+K +K L + L E R + +
Sbjct: 112 NRDALKLTVKKALEM-LGLSRENRRLRE 138
>TIGR_CMR|BA_0271 [details] [associations]
symbol:BA_0271 "DNA-binding response regulator"
species:198094 "Bacillus anthracis str. Ames" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] InterPro:IPR001789 InterPro:IPR001867
Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110 SMART:SM00448
SMART:SM00862 GO:GO:0006355 GO:GO:0035556 EMBL:AE016879
EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003677
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005622 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034819 HSSP:P08402
RefSeq:NP_842823.1 RefSeq:YP_016879.1 RefSeq:YP_026540.1
ProteinModelPortal:Q81VD8 DNASU:1085970
EnsemblBacteria:EBBACT00000008300 EnsemblBacteria:EBBACT00000015450
EnsemblBacteria:EBBACT00000024239 GeneID:1085970 GeneID:2815661
GeneID:2850601 KEGG:ban:BA_0271 KEGG:bar:GBAA_0271 KEGG:bat:BAS0256
OMA:EAKEMPI ProtClustDB:CLSK915759
BioCyc:BANT260799:GJAJ-293-MONOMER
BioCyc:BANT261594:GJ7F-302-MONOMER Uniprot:Q81VD8
Length = 233
Score = 113 (44.8 bits), Expect = 7.8e-05, P = 7.8e-05
Identities = 40/131 (30%), Positives = 68/131 (51%)
Query: 32 VLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITD 91
+L VDD K I L+TI K + G + LQ G D E+ + + +V L++ D
Sbjct: 6 ILVVDDE----KEIRNLITIY-LK----NEGYKVLQ-AG-DGEEGLRLLEENEVHLVVLD 54
Query: 92 YCMPGMTGYELLKKIKDSSALREIPVVIMSSENILARIDRCL--EDGAEDFIVKPVK-LS 148
MP + G + KI++ +E+P++++S++ +D+ L GA+D++ KP L
Sbjct: 55 IMMPKVDGIHMCMKIREE---KEMPIIMLSAKT--QDMDKILGLTTGADDYVTKPFNPLE 109
Query: 149 DVKRIKDYLTR 159
+ RIK L R
Sbjct: 110 LIARIKSQLRR 120
>UNIPROTKB|P76340 [details] [associations]
symbol:yedW "predicted DNA-binding response regulator in
two-component system with YedV" species:83333 "Escherichia coli
K-12" [GO:0005622 "intracellular" evidence=IEA] [GO:0000156
"phosphorelay response regulator activity" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0035556 "intracellular signal transduction"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0003677
"DNA binding" evidence=IEA] [GO:0000160 "phosphorelay signal
transduction system" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA;ISS] InterPro:IPR001789
InterPro:IPR001867 InterPro:IPR006291 InterPro:IPR016032
Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110 SMART:SM00448
SMART:SM00862 GO:GO:0005737 GO:GO:0006355 GO:GO:0035556 EMBL:U00096
EMBL:AP009048 GenomeReviews:AP009048_GR GenomeReviews:U00096_GR
GO:GO:0003677 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0006351
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG0745
SUPFAM:SSF46894 HOGENOM:HOG000034815 TIGRFAMs:TIGR01387 KO:K02483
PIR:E64961 RefSeq:NP_416478.2 RefSeq:YP_490219.1
ProteinModelPortal:P76340 SMR:P76340 DIP:DIP-11853N IntAct:P76340
MINT:MINT-1223015 PRIDE:P76340 EnsemblBacteria:EBESCT00000004539
EnsemblBacteria:EBESCT00000015627 GeneID:12931392 GeneID:946486
KEGG:ecj:Y75_p1936 KEGG:eco:b1969 PATRIC:32119269 EchoBASE:EB3798
EcoGene:EG14045 OMA:MTYDLWH ProtClustDB:PRK11517
BioCyc:EcoCyc:G7057-MONOMER BioCyc:ECOL316407:JW5322-MONOMER
Genevestigator:P76340 Uniprot:P76340
Length = 223
Score = 112 (44.5 bits), Expect = 9.4e-05, P = 9.4e-05
Identities = 32/127 (25%), Positives = 70/127 (55%)
Query: 32 VLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITD 91
+L ++D+ ++ + + L+ + + AV GR L +L L ++ + LII D
Sbjct: 3 ILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGL-YLALKDDYA----------LIILD 51
Query: 92 YCMPGMTGYELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVKLSDV- 150
+PGM G+++L+ ++ + ++ PV+ +++ + + R L+ GA D++VKP S++
Sbjct: 52 IMLPGMDGWQILQTLRTA---KQTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELL 108
Query: 151 KRIKDYL 157
R++ L
Sbjct: 109 ARVRAQL 115
>TIGR_CMR|BA_5504 [details] [associations]
symbol:BA_5504 "DNA-binding response regulator"
species:198094 "Bacillus anthracis str. Ames" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0003677 "DNA binding" evidence=ISS] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=ISS] InterPro:IPR001789
InterPro:IPR001867 Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110
SMART:SM00448 SMART:SM00862 GO:GO:0006355 GO:GO:0035556
EMBL:AE016879 EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003677
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005622 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034819 HSSP:P08402
RefSeq:NP_847664.1 RefSeq:YP_022171.1 RefSeq:YP_031352.1
ProteinModelPortal:Q81K35 DNASU:1085148
EnsemblBacteria:EBBACT00000010087 EnsemblBacteria:EBBACT00000018699
EnsemblBacteria:EBBACT00000023974 GeneID:1085148 GeneID:2819097
GeneID:2848975 KEGG:ban:BA_5504 KEGG:bar:GBAA_5504 KEGG:bat:BAS5113
OMA:NMARRVK ProtClustDB:CLSK899140
BioCyc:BANT260799:GJAJ-5188-MONOMER
BioCyc:BANT261594:GJ7F-5366-MONOMER Uniprot:Q81K35
Length = 223
Score = 112 (44.5 bits), Expect = 9.4e-05, P = 9.4e-05
Identities = 37/131 (28%), Positives = 67/131 (51%)
Query: 32 VLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITD 91
+L VDD R +I L + +V GR L E+ G D++I D
Sbjct: 3 ILVVDDESSIRNLIRMQLEMEGYEVLTAADGREVL-------ERWNEG-----PDVLILD 50
Query: 92 YCMPGMTGYELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVKLSD-V 150
+P GYELL+ ++ R+IPV+++++++ + L+ GA+D++ KP ++ +
Sbjct: 51 VMLPDTDGYELLRLFREKD--RDIPVLMLTAKSQMNDKLLGLQLGADDYVTKPFNYAELI 108
Query: 151 KRIKDYLTRDV 161
R+K+ +TR V
Sbjct: 109 LRVKN-MTRRV 118
>UNIPROTKB|Q485M3 [details] [associations]
symbol:flrC "Flagellar regulatory protein C" species:167879
"Colwellia psychrerythraea 34H" [GO:0001539 "ciliary or flagellar
motility" evidence=ISS] [GO:0003677 "DNA binding" evidence=ISS]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=ISS] [GO:0030092 "regulation of flagellum assembly"
evidence=ISS] InterPro:IPR001789 InterPro:IPR002078
InterPro:IPR002197 InterPro:IPR003593 InterPro:IPR009057
Pfam:PF00072 Pfam:PF00158 Pfam:PF02954 PRINTS:PR01590
PROSITE:PS50045 PROSITE:PS50110 SMART:SM00382 SMART:SM00448
GO:GO:0005524 GO:GO:0019861 GO:GO:0006355 GO:GO:0035556
GO:GO:0003677 GO:GO:0003700 GO:GO:0006351 Gene3D:1.10.10.60
SUPFAM:SSF46689 EMBL:CP000083 GenomeReviews:CP000083_GR
GO:GO:0017111 GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
eggNOG:COG2204 HOGENOM:HOG000058489 InterPro:IPR025943
InterPro:IPR025944 PROSITE:PS00676 PROSITE:PS00688 GO:GO:0001539
GO:GO:0030092 RefSeq:YP_268242.1 ProteinModelPortal:Q485M3
STRING:Q485M3 GeneID:3520612 KEGG:cps:CPS_1500 PATRIC:21466207
KO:K10943 OMA:FRETRND ProtClustDB:CLSK874687
BioCyc:CPSY167879:GI48-1581-MONOMER Uniprot:Q485M3
Length = 446
Score = 117 (46.2 bits), Expect = 9.4e-05, P = 9.4e-05
Identities = 36/116 (31%), Positives = 60/116 (51%)
Query: 29 EVHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLI 88
E +L V+D R+ + L+++ DSG AL L L + VD++
Sbjct: 3 EHKILVVEDDAGLREALIDTLSLADYHCVEADSGEAAL--LALKSQH---------VDIV 51
Query: 89 ITDYCMPGMTGYELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKP 144
I+D M GM+G LLK IK+ A +PV++M++ + + ++DGA ++I KP
Sbjct: 52 ISDVQMGGMSGLSLLKSIKNHHA--NLPVLLMTAFGTIDDAVQAMKDGACNYIAKP 105
>TIGR_CMR|CPS_1500 [details] [associations]
symbol:CPS_1500 "flagellar regulatory protein C"
species:167879 "Colwellia psychrerythraea 34H" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0001539 "ciliary or flagellar motility" evidence=ISS]
[GO:0003677 "DNA binding" evidence=ISS] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=ISS] [GO:0030092 "regulation
of flagellum assembly" evidence=ISS] InterPro:IPR001789
InterPro:IPR002078 InterPro:IPR002197 InterPro:IPR003593
InterPro:IPR009057 Pfam:PF00072 Pfam:PF00158 Pfam:PF02954
PRINTS:PR01590 PROSITE:PS50045 PROSITE:PS50110 SMART:SM00382
SMART:SM00448 GO:GO:0005524 GO:GO:0019861 GO:GO:0006355
GO:GO:0035556 GO:GO:0003677 GO:GO:0003700 GO:GO:0006351
Gene3D:1.10.10.60 SUPFAM:SSF46689 EMBL:CP000083
GenomeReviews:CP000083_GR GO:GO:0017111 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG2204
HOGENOM:HOG000058489 InterPro:IPR025943 InterPro:IPR025944
PROSITE:PS00676 PROSITE:PS00688 GO:GO:0001539 GO:GO:0030092
RefSeq:YP_268242.1 ProteinModelPortal:Q485M3 STRING:Q485M3
GeneID:3520612 KEGG:cps:CPS_1500 PATRIC:21466207 KO:K10943
OMA:FRETRND ProtClustDB:CLSK874687
BioCyc:CPSY167879:GI48-1581-MONOMER Uniprot:Q485M3
Length = 446
Score = 117 (46.2 bits), Expect = 9.4e-05, P = 9.4e-05
Identities = 36/116 (31%), Positives = 60/116 (51%)
Query: 29 EVHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLI 88
E +L V+D R+ + L+++ DSG AL L L + VD++
Sbjct: 3 EHKILVVEDDAGLREALIDTLSLADYHCVEADSGEAAL--LALKSQH---------VDIV 51
Query: 89 ITDYCMPGMTGYELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKP 144
I+D M GM+G LLK IK+ A +PV++M++ + + ++DGA ++I KP
Sbjct: 52 ISDVQMGGMSGLSLLKSIKNHHA--NLPVLLMTAFGTIDDAVQAMKDGACNYIAKP 105
>TIGR_CMR|GSU_1671 [details] [associations]
symbol:GSU_1671 "response regulator/GGDEF domain protein"
species:243231 "Geobacter sulfurreducens PCA" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
InterPro:IPR001054 InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110
SMART:SM00448 Pfam:PF00990 GO:GO:0006355 GO:GO:0005622
EMBL:AE017180 GenomeReviews:AE017180_GR SUPFAM:SSF55073
GO:GO:0016849 GO:GO:0009190 InterPro:IPR000160 SMART:SM00267
TIGRFAMs:TIGR00254 PROSITE:PS50887 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 HSSP:P06143 HOGENOM:HOG000167205 RefSeq:NP_952722.1
ProteinModelPortal:Q74CK2 GeneID:2687445 KEGG:gsu:GSU1671
PATRIC:22026193 OMA:IADWLMP ProtClustDB:CLSK740862
BioCyc:GSUL243231:GH27-1671-MONOMER Uniprot:Q74CK2
Length = 322
Score = 115 (45.5 bits), Expect = 9.6e-05, P = 9.6e-05
Identities = 35/131 (26%), Positives = 66/131 (50%)
Query: 32 VLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITD 91
+L VDD+ + R ++E L + V ++G+ AL+ G+ +++TD
Sbjct: 18 ILIVDDNRLLRTMLETSLKSAGYDVVMAENGKEALEIFN-------KGY----YPIVMTD 66
Query: 92 YCMPGMTGYELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPV------ 145
+ MP M G EL + I+ + R +++++S++ + LE GA++++VKP
Sbjct: 67 WVMPEMDGLELCRAIRADCSGRYTYIILLTSQDSKNDVIAGLEAGADEYLVKPAHQVELL 126
Query: 146 -KLSDVKRIKD 155
+L KRI D
Sbjct: 127 TRLKTAKRILD 137
>TIGR_CMR|GSU_0104 [details] [associations]
symbol:GSU_0104 "response regulator, putative"
species:243231 "Geobacter sulfurreducens PCA" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110 SMART:SM00448
GO:GO:0006355 GO:GO:0035556 GO:GO:0005622 EMBL:AE017180
GenomeReviews:AE017180_GR GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 HOGENOM:HOG000034820 HSSP:P10957 RefSeq:NP_951166.1
ProteinModelPortal:Q74GY9 GeneID:2688136 KEGG:gsu:GSU0104
PATRIC:22022954 OMA:NVAVARD ProtClustDB:CLSK309460
BioCyc:GSUL243231:GH27-65-MONOMER Uniprot:Q74GY9
Length = 129
Score = 96 (38.9 bits), Expect = 9.7e-05, P = 9.7e-05
Identities = 26/89 (29%), Positives = 45/89 (50%)
Query: 63 RRALQ--FLGLDEEQSING-FDGLK-VD--LIITDYCMPGMTGYELLKKIKDSSALREIP 116
R LQ + D EQ++ F+ +D L++ D +P M G E+L+ I+ R P
Sbjct: 25 RHGLQDVVVARDGEQAVGQLFEAAPPLDPWLVLLDLKLPKMNGLEVLRTIRSEERTRHTP 84
Query: 117 VVIMSSENILARIDRCLEDGAEDFIVKPV 145
V+++SS + +C E G ++ KP+
Sbjct: 85 VIVISSSQEETDVVKCRELGVLAYLTKPI 113
>TIGR_CMR|GSU_3198 [details] [associations]
symbol:GSU_3198 "chemotaxis protein CheY" species:243231
"Geobacter sulfurreducens PCA" [GO:0004871 "signal transducer
activity" evidence=ISS] [GO:0006935 "chemotaxis" evidence=ISS]
InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110 SMART:SM00448
GO:GO:0006355 GO:GO:0035556 GO:GO:0005622 EMBL:AE017180
GenomeReviews:AE017180_GR GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 HOGENOM:HOG000034820 KO:K03413 RefSeq:NP_954239.1
HSSP:P04042 ProteinModelPortal:Q747R7 GeneID:2687002
KEGG:gsu:GSU3198 PATRIC:22029251 OMA:PSARIIM ProtClustDB:CLSK829154
BioCyc:GSUL243231:GH27-3148-MONOMER Uniprot:Q747R7
Length = 121
Score = 96 (38.9 bits), Expect = 9.7e-05, P = 9.7e-05
Identities = 34/127 (26%), Positives = 59/127 (46%)
Query: 32 VLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITD 91
V+ VDD+ R ++ +L + +V A S D +++ F ++ D++ D
Sbjct: 5 VMIVDDALFMRNMLRGILEDAGYEVVAEAS----------DGAEAVVTFRDVRPDVVTLD 54
Query: 92 YCMPGMTGYELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVKLSDVK 151
MP G E L++I + VVI S+ + +D+ GA+DFI+KP VK
Sbjct: 55 IIMPVKNGIEALREIMAIDP--KARVVICSAVGQESLVDKARSVGAKDFILKPFNPERVK 112
Query: 152 RIKDYLT 158
+ +T
Sbjct: 113 DVMKQVT 119
>TIGR_CMR|GSU_2915 [details] [associations]
symbol:GSU_2915 "sigma-54 dependent DNA-binding response
regulator" species:243231 "Geobacter sulfurreducens PCA"
[GO:0000156 "phosphorelay response regulator activity"
evidence=ISS] [GO:0000160 "phosphorelay signal transduction system"
evidence=ISS] InterPro:IPR001789 InterPro:IPR002078
InterPro:IPR002197 InterPro:IPR003593 InterPro:IPR009057
Pfam:PF00072 Pfam:PF00158 Pfam:PF02954 PRINTS:PR01590
PROSITE:PS50045 PROSITE:PS50110 SMART:SM00382 SMART:SM00448
GO:GO:0005524 GO:GO:0035556 GO:GO:0003677 GO:GO:0003700
GO:GO:0006351 GO:GO:0005622 Gene3D:1.10.10.60 SUPFAM:SSF46689
EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0017111 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000058489
InterPro:IPR025662 InterPro:IPR025943 InterPro:IPR025944
PROSITE:PS00675 PROSITE:PS00676 PROSITE:PS00688 RefSeq:NP_953957.1
ProteinModelPortal:Q748T6 GeneID:2688534 KEGG:gsu:GSU2915
PATRIC:22028689 OMA:AFRYRMK ProtClustDB:CLSK829000
BioCyc:GSUL243231:GH27-2910-MONOMER Uniprot:Q748T6
Length = 457
Score = 117 (46.2 bits), Expect = 9.8e-05, P = 9.8e-05
Identities = 39/146 (26%), Positives = 70/146 (47%)
Query: 32 VLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITD 91
+L VDD + R +E+ L V + +G AL+ + EEQ DL++ D
Sbjct: 6 ILVVDDEHLIRWSLEQNLKKQGYDVVSAGNGEDALRIVR--EEQP---------DLVLLD 54
Query: 92 YCMPGMTGYELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVKLSDVK 151
+PG++G E L+KIK+ EI V+++++ L + GA D+I KP L ++
Sbjct: 55 IQLPGISGLEALEKIKEYD--EEILVIMVTAHGALETAVHAMRLGAYDYINKPFNLDEMS 112
Query: 152 RIKDYLTRDVNLGNEGRGINKRKARE 177
+ +L E + + ++R+
Sbjct: 113 IVIRKALETSDLRREVQRLRSEQSRK 138
>TIGR_CMR|BA_0577 [details] [associations]
symbol:BA_0577 "response regulator" species:198094
"Bacillus anthracis str. Ames" [GO:0000156 "phosphorelay response
regulator activity" evidence=ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=ISS] InterPro:IPR001789
InterPro:IPR024187 Pfam:PF00072 PIRSF:PIRSF006171 PROSITE:PS50110
SMART:SM00448 GO:GO:0005737 GO:GO:0006355 GO:GO:0035556
EMBL:AE016879 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GO:GO:0003677 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 GO:GO:0009605 GO:GO:0001071
HOGENOM:HOG000034816 RefSeq:NP_843111.2 RefSeq:YP_026824.1
ProteinModelPortal:Q81VC0 DNASU:1087932
EnsemblBacteria:EBBACT00000008382 EnsemblBacteria:EBBACT00000024391
GeneID:1087932 GeneID:2849175 KEGG:ban:BA_0577 KEGG:bat:BAS0546
PATRIC:18778756 KO:K11615 ProtClustDB:CLSK915867
BioCyc:BANT260799:GJAJ-606-MONOMER Uniprot:Q81VC0
Length = 235
Score = 112 (44.5 bits), Expect = 0.00011, P = 0.00011
Identities = 25/85 (29%), Positives = 50/85 (58%)
Query: 74 EQSINGFDGLKVDLIITDYCMPGMTGYELLKKIKDSSALREIPVVIMSSENILARIDRCL 133
+ +I + ++DL++ D MP TG+ELL I++ +EI ++++S+ + + I + L
Sbjct: 37 KSAIEVLEESRIDLVLLDIFMPEETGFELLMYIRNQE--KEIDIMMISAVHDMGSIKKAL 94
Query: 134 EDGAEDFIVKPVKLSDVKRIKDYLT 158
+ G D+++KP +R K+ LT
Sbjct: 95 QYGVVDYLIKPFTF---ERFKEALT 116
>UNIPROTKB|P0AF28 [details] [associations]
symbol:narL "NarL" species:83333 "Escherichia coli K-12"
[GO:0043565 "sequence-specific DNA binding" evidence=IEA]
[GO:0005622 "intracellular" evidence=IEA] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=IEA] [GO:0000156 "phosphorelay response regulator
activity" evidence=IEA] [GO:0042128 "nitrate assimilation"
evidence=IEA] [GO:0035556 "intracellular signal transduction"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA;IMP] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA;IMP]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0000160
"phosphorelay signal transduction system" evidence=IEA]
InterPro:IPR000792 InterPro:IPR001789 InterPro:IPR016032
Pfam:PF00072 Pfam:PF00196 PRINTS:PR00038 PROSITE:PS00622
PROSITE:PS50043 PROSITE:PS50110 SMART:SM00421 SMART:SM00448
GO:GO:0005524 GO:GO:0006355 GO:GO:0035556 EMBL:U00096 EMBL:AP009048
GenomeReviews:AP009048_GR GenomeReviews:U00096_GR GO:GO:0003677
GO:GO:0043565 GO:GO:0003700 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0006351 GO:GO:0005622 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 SUPFAM:SSF46894 GO:GO:0042128 eggNOG:COG2197
HOGENOM:HOG000034813 EMBL:X69189 EMBL:X13360 EMBL:M24910
EMBL:X14884 PIR:S09285 RefSeq:NP_415739.1 RefSeq:YP_489491.1
PDB:1A04 PDB:1JE8 PDB:1RNL PDB:1ZG1 PDB:1ZG5 PDBsum:1A04
PDBsum:1JE8 PDBsum:1RNL PDBsum:1ZG1 PDBsum:1ZG5
ProteinModelPortal:P0AF28 SMR:P0AF28 DIP:DIP-35941N IntAct:P0AF28
PRIDE:P0AF28 EnsemblBacteria:EBESCT00000003408
EnsemblBacteria:EBESCT00000014443 GeneID:12932638 GeneID:945795
KEGG:ecj:Y75_p1196 KEGG:eco:b1221 PATRIC:32117700 EchoBASE:EB0637
EcoGene:EG10643 KO:K07684 OMA:NHEDDVV ProtClustDB:PRK10651
BioCyc:EcoCyc:NARL-MONOMER BioCyc:ECOL316407:JW1212-MONOMER
EvolutionaryTrace:P0AF28 Genevestigator:P0AF28 Uniprot:P0AF28
Length = 216
Score = 111 (44.1 bits), Expect = 0.00011, P = 0.00011
Identities = 35/126 (27%), Positives = 62/126 (49%)
Query: 25 SDTEEVHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLK 84
S+ E +L +DD + R +++L++++ +T V EQ I + L
Sbjct: 2 SNQEPATILLIDDHPMLRTGVKQLISMAP-DITVVGEASNG--------EQGIELAESLD 52
Query: 85 VDLIITDYCMPGMTGYELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKP 144
DLI+ D MPGM G E L K+++ S I V+ S N + L+ GA+ +++K
Sbjct: 53 PDLILLDLNMPGMNGLETLDKLREKSLSGRI--VVFSVSNHEEDVVTALKRGADGYLLKD 110
Query: 145 VKLSDV 150
++ D+
Sbjct: 111 MEPEDL 116
>UNIPROTKB|Q9KT55 [details] [associations]
symbol:VC_1050 "Response regulator" species:243277 "Vibrio
cholerae O1 biovar El Tor str. N16961" [GO:0000156 "phosphorelay
response regulator activity" evidence=ISS] [GO:0000160
"phosphorelay signal transduction system" evidence=ISS] [GO:0035556
"intracellular signal transduction" evidence=ISS]
InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110 SMART:SM00448
GO:GO:0006355 EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0005622
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172 OMA:MICDLAM
HSSP:Q56312 PIR:A82249 RefSeq:NP_230695.1 ProteinModelPortal:Q9KT55
DNASU:2614320 GeneID:2614320 KEGG:vch:VC1050 PATRIC:20081198
ProtClustDB:CLSK874195 Uniprot:Q9KT55
Length = 368
Score = 115 (45.5 bits), Expect = 0.00012, P = 0.00012
Identities = 28/86 (32%), Positives = 49/86 (56%)
Query: 66 LQFLGLDEEQSINGFDGLKV------DLIITDYCMPGMTGYELLKKIKDSSALREIPVVI 119
LQ G ++ NG DGL+ DLI+ D MP + G E ++++ SS+ +P+V+
Sbjct: 44 LQKYGYQVIEAENGLDGLRKLRDHEPDLILCDLSMPVLNGIEFVEEV--SSSYPSLPLVV 101
Query: 120 MSSENILARIDRCLEDGAEDFIVKPV 145
+S+ +A + + L G +DF+ KP+
Sbjct: 102 VSATEEMADVAKALRFGIKDFLPKPI 127
>TIGR_CMR|VC_1050 [details] [associations]
symbol:VC_1050 "response regulator" species:686 "Vibrio
cholerae O1 biovar El Tor" [GO:0000156 "phosphorelay response
regulator activity" evidence=ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=ISS] InterPro:IPR001789 Pfam:PF00072
PROSITE:PS50110 SMART:SM00448 GO:GO:0006355 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0005622 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 OMA:MICDLAM HSSP:Q56312
PIR:A82249 RefSeq:NP_230695.1 ProteinModelPortal:Q9KT55
DNASU:2614320 GeneID:2614320 KEGG:vch:VC1050 PATRIC:20081198
ProtClustDB:CLSK874195 Uniprot:Q9KT55
Length = 368
Score = 115 (45.5 bits), Expect = 0.00012, P = 0.00012
Identities = 28/86 (32%), Positives = 49/86 (56%)
Query: 66 LQFLGLDEEQSINGFDGLKV------DLIITDYCMPGMTGYELLKKIKDSSALREIPVVI 119
LQ G ++ NG DGL+ DLI+ D MP + G E ++++ SS+ +P+V+
Sbjct: 44 LQKYGYQVIEAENGLDGLRKLRDHEPDLILCDLSMPVLNGIEFVEEV--SSSYPSLPLVV 101
Query: 120 MSSENILARIDRCLEDGAEDFIVKPV 145
+S+ +A + + L G +DF+ KP+
Sbjct: 102 VSATEEMADVAKALRFGIKDFLPKPI 127
>TIGR_CMR|CHY_1018 [details] [associations]
symbol:CHY_1018 "chemotaxis response regulator"
species:246194 "Carboxydothermus hydrogenoformans Z-2901"
[GO:0000156 "phosphorelay response regulator activity"
evidence=ISS] [GO:0000160 "phosphorelay signal transduction system"
evidence=ISS] [GO:0006935 "chemotaxis" evidence=ISS]
InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110 SMART:SM00448
GO:GO:0006355 GO:GO:0035556 EMBL:CP000141 GenomeReviews:CP000141_GR
GO:GO:0005622 GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
eggNOG:COG0784 HOGENOM:HOG000034820 KO:K03413 OMA:PFQAPKV
RefSeq:YP_359865.1 ProteinModelPortal:Q3ADB9 SMR:Q3ADB9
STRING:Q3ADB9 GeneID:3728492 KEGG:chy:CHY_1018 PATRIC:21275169
BioCyc:CHYD246194:GJCN-1017-MONOMER Uniprot:Q3ADB9
Length = 121
Score = 95 (38.5 bits), Expect = 0.00013, P = 0.00013
Identities = 32/114 (28%), Positives = 57/114 (50%)
Query: 32 VLAVDDSFVDRKVIERLLTISSCKVTA-VDSGRRALQFLGLDEEQSINGFDGLKVDLIIT 90
VL VDD+ R +I+ +L + +V ++G +A++ + LK D++
Sbjct: 5 VLIVDDAAFMRMMIKNILVKNGYEVVGEAENGAQAVEM-----------YKELKPDVVTM 53
Query: 91 DYCMPGMTGYELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKP 144
D MP M G + +++IK +I ++ S+ A + ++ GA DFIVKP
Sbjct: 54 DITMPEMDGIQAVREIKKIDPNAKI--IMCSAMGQQALVMEAIQAGAIDFIVKP 105
>TIGR_CMR|GSU_2693 [details] [associations]
symbol:GSU_2693 "response regulator" species:243231
"Geobacter sulfurreducens PCA" [GO:0000156 "phosphorelay response
regulator activity" evidence=ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=ISS] InterPro:IPR001789 Pfam:PF00072
PROSITE:PS50110 SMART:SM00448 GO:GO:0006355 GO:GO:0035556
GO:GO:0005622 EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034820
RefSeq:NP_953738.1 ProteinModelPortal:Q749P9 GeneID:2687548
KEGG:gsu:GSU2693 PATRIC:22028241 OMA:VEMHRAR
BioCyc:GSUL243231:GH27-2669-MONOMER Uniprot:Q749P9
Length = 128
Score = 95 (38.5 bits), Expect = 0.00013, P = 0.00013
Identities = 32/118 (27%), Positives = 56/118 (47%)
Query: 30 VHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLII 89
++VL VDD V+ LL +VT+ G A+ + + + D++I
Sbjct: 4 INVLIVDDDVNFLYVLGLLLESKDLEVTSASRGAEAVDIV---RKTTF--------DMVI 52
Query: 90 TDYCMPGMTGYELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVKL 147
TD+ MPGM G EL +K+ ++PV++++ E I+ + G + KPV +
Sbjct: 53 TDFSMPGMNGLELAAAVKELHP--DLPVMMVTCEVTSDLIEMATDVGICRVLDKPVNV 108
>UNIPROTKB|Q9KRN4 [details] [associations]
symbol:VC1602 "Chemotaxis protein CheV" species:243277
"Vibrio cholerae O1 biovar El Tor str. N16961" [GO:0004871 "signal
transducer activity" evidence=ISS] [GO:0006935 "chemotaxis"
evidence=ISS] InterPro:IPR001789 InterPro:IPR002545 Pfam:PF00072
Pfam:PF01584 PROSITE:PS50110 PROSITE:PS50851 SMART:SM00260
SMART:SM00448 GO:GO:0006355 GO:GO:0035556 GenomeReviews:AE003852_GR
GO:GO:0005622 GO:GO:0006935 GO:GO:0004871 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 SUPFAM:SSF50341 KO:K03415
OMA:AKWIGIV InterPro:IPR024181 PIRSF:PIRSF002867 HSSP:P04042
EMBL:AE004237 PIR:A82180 RefSeq:NP_231242.1
ProteinModelPortal:Q9KRN4 DNASU:2613858 GeneID:2613858
KEGG:vch:VC1602 PATRIC:20082263 ProtClustDB:CLSK874446
Uniprot:Q9KRN4
Length = 328
Score = 114 (45.2 bits), Expect = 0.00013, P = 0.00013
Identities = 32/116 (27%), Positives = 58/116 (50%)
Query: 32 VLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFD---GLKVDLI 88
++ VDDS R +I+ L+ + + A G A + L ++ +Q+ + +D +
Sbjct: 198 IMVVDDSAFIRSLIQDTLSSAGYNIIACKDGGEAHEKL-MELKQAAKEENVPVSELIDAV 256
Query: 89 ITDYCMPGMTGYELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKP 144
+TD MP M G L+K+++D + +P+V+ SS + L GA D + KP
Sbjct: 257 VTDVEMPRMDGMHLIKRLRDDDSYSSMPIVMFSSLMSDDNRAKALALGANDTLTKP 312
>TIGR_CMR|VC_1602 [details] [associations]
symbol:VC_1602 "chemotaxis protein CheV" species:686
"Vibrio cholerae O1 biovar El Tor" [GO:0004871 "signal transducer
activity" evidence=ISS] [GO:0006935 "chemotaxis" evidence=ISS]
InterPro:IPR001789 InterPro:IPR002545 Pfam:PF00072 Pfam:PF01584
PROSITE:PS50110 PROSITE:PS50851 SMART:SM00260 SMART:SM00448
GO:GO:0006355 GO:GO:0035556 GenomeReviews:AE003852_GR GO:GO:0005622
GO:GO:0006935 GO:GO:0004871 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 SUPFAM:SSF50341 KO:K03415 OMA:AKWIGIV
InterPro:IPR024181 PIRSF:PIRSF002867 HSSP:P04042 EMBL:AE004237
PIR:A82180 RefSeq:NP_231242.1 ProteinModelPortal:Q9KRN4
DNASU:2613858 GeneID:2613858 KEGG:vch:VC1602 PATRIC:20082263
ProtClustDB:CLSK874446 Uniprot:Q9KRN4
Length = 328
Score = 114 (45.2 bits), Expect = 0.00013, P = 0.00013
Identities = 32/116 (27%), Positives = 58/116 (50%)
Query: 32 VLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFD---GLKVDLI 88
++ VDDS R +I+ L+ + + A G A + L ++ +Q+ + +D +
Sbjct: 198 IMVVDDSAFIRSLIQDTLSSAGYNIIACKDGGEAHEKL-MELKQAAKEENVPVSELIDAV 256
Query: 89 ITDYCMPGMTGYELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKP 144
+TD MP M G L+K+++D + +P+V+ SS + L GA D + KP
Sbjct: 257 VTDVEMPRMDGMHLIKRLRDDDSYSSMPIVMFSSLMSDDNRAKALALGANDTLTKP 312
>UNIPROTKB|Q11156 [details] [associations]
symbol:regX3 "Sensory transduction protein regX3"
species:1773 "Mycobacterium tuberculosis" [GO:0003677 "DNA binding"
evidence=IDA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IDA] [GO:0009405 "pathogenesis"
evidence=IDA] [GO:0019217 "regulation of fatty acid metabolic
process" evidence=IDA] [GO:0019220 "regulation of phosphate
metabolic process" evidence=IDA] [GO:0080134 "regulation of
response to stress" evidence=IDA] InterPro:IPR001789
InterPro:IPR001867 InterPro:IPR016032 Pfam:PF00072 Pfam:PF00486
PROSITE:PS50110 SMART:SM00448 SMART:SM00862 GO:GO:0009405
GO:GO:0006355 EMBL:AE000516 GenomeReviews:AE000516_GR
GenomeReviews:AL123456_GR GO:GO:0035556 GO:GO:0003677
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0019217 GO:GO:0006351
EMBL:BX842573 GO:GO:0005622 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 eggNOG:COG0745 HOGENOM:HOG000034819 SUPFAM:SSF46894
GO:GO:0080134 GO:GO:0019220 EMBL:Y13628 PIR:F70744
RefSeq:NP_215005.1 RefSeq:NP_334919.1 RefSeq:YP_006513821.1
PDB:2OQR PDBsum:2OQR ProteinModelPortal:Q11156 SMR:Q11156
PRIDE:Q11156 EnsemblBacteria:EBMYCT00000001447
EnsemblBacteria:EBMYCT00000072066 GeneID:13318362 GeneID:887195
GeneID:923874 KEGG:mtc:MT0510 KEGG:mtu:Rv0491 KEGG:mtv:RVBD_0491
PATRIC:18122830 TubercuList:Rv0491 KO:K07776 OMA:DVDSHTV
ProtClustDB:CLSK790554 EvolutionaryTrace:Q11156 Uniprot:Q11156
Length = 227
Score = 111 (44.1 bits), Expect = 0.00013, P = 0.00013
Identities = 26/91 (28%), Positives = 54/91 (59%)
Query: 72 DEEQSINGFDGLKVDLIITDYCMPGMTGYELLKKIKDSSALREIPVVIMSSENILARIDR 131
D ++ FD D+++ D +PGM+G ++ K+++ S+ +PV+++++ + + ID+
Sbjct: 33 DGPAALAEFDRAGADIVLLDLMLPGMSGTDVCKQLRARSS---VPVIMVTARD--SEIDK 87
Query: 132 C--LEDGAEDFIVKPVKLSD-VKRIKDYLTR 159
LE GA+D++ KP + + RI+ L R
Sbjct: 88 VVGLELGADDYVTKPYSARELIARIRAVLRR 118
>TIGR_CMR|GSU_1003 [details] [associations]
symbol:GSU_1003 "nitrogen regulation protein NR(I)"
species:243231 "Geobacter sulfurreducens PCA" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0006808 "regulation of nitrogen utilization" evidence=ISS]
InterPro:IPR001789 InterPro:IPR002078 InterPro:IPR002197
InterPro:IPR003593 InterPro:IPR009057 Pfam:PF00072 Pfam:PF00158
Pfam:PF02954 PRINTS:PR01590 PROSITE:PS50045 PROSITE:PS50110
SMART:SM00382 SMART:SM00448 GO:GO:0005524 GO:GO:0035556
GO:GO:0003677 GO:GO:0003700 GO:GO:0006351 GO:GO:0005622
Gene3D:1.10.10.60 SUPFAM:SSF46689 EMBL:AE017180
GenomeReviews:AE017180_GR GO:GO:0017111 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000058489
InterPro:IPR025662 InterPro:IPR025943 InterPro:IPR025944
PROSITE:PS00675 PROSITE:PS00676 PROSITE:PS00688 KO:K07712
HSSP:P06143 RefSeq:NP_952057.1 ProteinModelPortal:Q74EF9
GeneID:2687478 KEGG:gsu:GSU1003 PATRIC:22024778 OMA:NQVRAAD
ProtClustDB:CLSK828129 BioCyc:GSUL243231:GH27-989-MONOMER
Uniprot:Q74EF9
Length = 481
Score = 116 (45.9 bits), Expect = 0.00014, P = 0.00014
Identities = 30/95 (31%), Positives = 50/95 (52%)
Query: 69 LGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKKIKDSSALREIPVVIMSSENILAR 128
L D E+++ + DL I D MPG TG ELL K+++ ++ +VIM++E +
Sbjct: 32 LARDGEEALRLIQSNEYDLAILDIKMPGFTGLELLDKVRELK--HDLLMVIMTAEASMKN 89
Query: 129 IDRCLEDGAEDFIVKPVKLSDVKRI--KDYLTRDV 161
++ GA D+I KP L + I K + R++
Sbjct: 90 AVEAMKRGAYDYITKPFDLDVIDAIIEKVHKAREI 124
>UNIPROTKB|Q4K4F2 [details] [associations]
symbol:chpA "Putative sensor histidine kinase/response
regulator ChpA" species:220664 "Pseudomonas protegens Pf-5"
[GO:0043107 "type IV pilus-dependent motility" evidence=ISS]
InterPro:IPR001789 InterPro:IPR002545 InterPro:IPR003594
InterPro:IPR004105 InterPro:IPR004358 InterPro:IPR008207
InterPro:IPR009082 Pfam:PF00072 Pfam:PF01584 Pfam:PF01627
Pfam:PF02518 Pfam:PF02895 PRINTS:PR00344 PROSITE:PS50110
PROSITE:PS50851 PROSITE:PS50894 SMART:SM00073 SMART:SM00260
SMART:SM00387 SMART:SM00448 InterPro:IPR005467 GO:GO:0005524
GO:GO:0005737 GO:GO:0006355 GO:GO:0035556 GO:GO:0006935
EMBL:CP000076 GenomeReviews:CP000076_GR GO:GO:0023014 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG0784 GO:GO:0000155
Gene3D:3.30.565.10 SUPFAM:SSF55874 SUPFAM:SSF47384 PROSITE:PS50109
Gene3D:1.20.120.160 SUPFAM:SSF47226 Gene3D:1.10.287.560
SUPFAM:SSF50341 GO:GO:0043107 RefSeq:YP_262881.1
ProteinModelPortal:Q4K4F2 STRING:Q4K4F2 GeneID:3480195
KEGG:pfl:PFL_5823 PATRIC:19881153 HOGENOM:HOG000226064 KO:K02487
KO:K06596 OMA:QIHQLVI ProtClustDB:CLSK458195
BioCyc:PFLU220664:GIX8-5863-MONOMER Uniprot:Q4K4F2
Length = 1969
Score = 122 (48.0 bits), Expect = 0.00014, P = 0.00014
Identities = 40/138 (28%), Positives = 64/138 (46%)
Query: 11 RLISDEIDGFDLSPSDTEEVHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLG 70
RL DE ++ P + VL VDDS RKV RLL V G A+ L
Sbjct: 1832 RLAGDE-PASEVQPP--RPMLVLVVDDSVTVRKVTSRLLERHGMNVLTAKDGVDAMALLA 1888
Query: 71 LDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKKIKDSSALREIPVVIMSSENILARID 130
E + DL++ D MP M G+E+ ++++ L+ +P+++++S D
Sbjct: 1889 ---EHT--------PDLMLLDIEMPRMDGFEVAIQVRNDPRLQHLPIIMITSRTGQKHRD 1937
Query: 131 RCLEDGAEDFIVKPVKLS 148
R + G D++ KP + S
Sbjct: 1938 RAMAIGVNDYLGKPYQES 1955
>TIGR_CMR|SPO_1679 [details] [associations]
symbol:SPO_1679 "DNA-binding response regulator CtrA"
species:246200 "Ruegeria pomeroyi DSS-3" [GO:0000156 "phosphorelay
response regulator activity" evidence=ISS] [GO:0000160
"phosphorelay signal transduction system" evidence=ISS] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] InterPro:IPR001789 InterPro:IPR001867
Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110 SMART:SM00448
SMART:SM00862 GO:GO:0006355 GO:GO:0035556 EMBL:CP000031
GenomeReviews:CP000031_GR GO:GO:0003677 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0005622 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 HOGENOM:HOG000034815 RefSeq:YP_166918.1
ProteinModelPortal:Q5LST7 GeneID:3194546 KEGG:sil:SPO1679
PATRIC:23376683 KO:K13584 OMA:PDMNGHE ProtClustDB:CLSK863578
Uniprot:Q5LST7
Length = 238
Score = 111 (44.1 bits), Expect = 0.00015, P = 0.00015
Identities = 38/132 (28%), Positives = 67/132 (50%)
Query: 30 VHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLII 89
+ +L V+D K IE +LT ++ V A D G + L +D DLI+
Sbjct: 1 MRILLVEDDPTTSKSIELMLTHANLNVYATDLGEEGIDLAKL--------YD---YDLIL 49
Query: 90 TDYCMPGMTGYELLKKIKDSSALREIPVVIMSS-ENILARIDRCLEDGAEDFIVKPVKLS 148
D +P M G+E+L++++ S E P++I+S ++ ++I + GA+D++ KP
Sbjct: 50 LDINLPDMNGHEVLRQLRMSRI--ETPILILSGVDDTESKI-KGFGFGADDYLTKPFHRE 106
Query: 149 D-VKRIKDYLTR 159
+ V RI + R
Sbjct: 107 ELVARIHAIIRR 118
>TIGR_CMR|BA_2212 [details] [associations]
symbol:BA_2212 "DNA-binding response regulator"
species:198094 "Bacillus anthracis str. Ames" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0003677 "DNA binding" evidence=ISS] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=ISS] InterPro:IPR001789
InterPro:IPR001867 Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110
SMART:SM00448 SMART:SM00862 GO:GO:0006355 GO:GO:0035556
EMBL:AE016879 EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003677
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005622 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034815 HSSP:Q9WYN0
RefSeq:NP_844604.1 RefSeq:YP_018854.1 RefSeq:YP_028319.1
ProteinModelPortal:Q81R46 DNASU:1085543
EnsemblBacteria:EBBACT00000012844 EnsemblBacteria:EBBACT00000018535
EnsemblBacteria:EBBACT00000022147 GeneID:1085543 GeneID:2815122
GeneID:2848498 KEGG:ban:BA_2212 KEGG:bar:GBAA_2212 KEGG:bat:BAS2056
OMA:IRATESK ProtClustDB:CLSK918052
BioCyc:BANT260799:GJAJ-2124-MONOMER
BioCyc:BANT261594:GJ7F-2201-MONOMER Uniprot:Q81R46
Length = 227
Score = 110 (43.8 bits), Expect = 0.00017, P = 0.00017
Identities = 26/97 (26%), Positives = 61/97 (62%)
Query: 66 LQFLGLDEEQSINGFDGLKV------DLIITDYCMPGMTGYELLKKIKDSSALREIPVVI 119
L+F G + E + G + ++ DLI+ D +P ++G E+L++I+ +A+ IP+++
Sbjct: 22 LEFEGYESEIAKTGTEAMEKFGNGNWDLILLDVMLPNISGLEVLRRIRLKNAV--IPIIL 79
Query: 120 MSS-ENILARIDRCLEDGAEDFIVKPVKLSDV-KRIK 154
+++ ++++ ++ L+ GA D+I KP ++ ++ RI+
Sbjct: 80 LTARDSVVDKVSG-LDQGASDYITKPFQIEELLARIR 115
>TIGR_CMR|SO_4388 [details] [associations]
symbol:SO_4388 "DNA-binding response regulator"
species:211586 "Shewanella oneidensis MR-1" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0003677 "DNA binding" evidence=ISS] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=ISS] InterPro:IPR001789
InterPro:IPR001867 Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110
SMART:SM00448 SMART:SM00862 GO:GO:0006355 GO:GO:0035556
GO:GO:0003677 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005622
EMBL:AE014299 GenomeReviews:AE014299_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034819 HSSP:P08402
RefSeq:NP_719912.1 ProteinModelPortal:Q8E997 GeneID:1171990
KEGG:son:SO_4388 PATRIC:23528433 ProtClustDB:CLSK889389
Uniprot:Q8E997
Length = 227
Score = 110 (43.8 bits), Expect = 0.00017, P = 0.00017
Identities = 40/131 (30%), Positives = 66/131 (50%)
Query: 32 VLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITD 91
++A DD + R+ + +L+ V D+G+ AL L +EQ D II D
Sbjct: 4 LIAEDDIHI-RQGLADMLSREGYSVLLADNGKVAL--LKYQQEQP---------DFIILD 51
Query: 92 YCMPGMTGYELLKKIKDSSALREIPVVIMSSENILARIDRCL--EDGAEDFIVKPVKLSD 149
MP + GY + K+I+ + PV+ +S++ +D+ L E GA+D+I KP + +
Sbjct: 52 IMMPELDGYSVCKEIRKHD--EQTPVIFLSAKG--EELDKVLGLELGADDYINKPFGIHE 107
Query: 150 VK-RIKDYLTR 159
V+ RIK R
Sbjct: 108 VRARIKTIARR 118
>TIGR_CMR|ECH_0773 [details] [associations]
symbol:ECH_0773 "putative response regulator/diguanylate
cyclase" species:205920 "Ehrlichia chaffeensis str. Arkansas"
[GO:0000156 "phosphorelay response regulator activity"
evidence=ISS] [GO:0000160 "phosphorelay signal transduction system"
evidence=ISS] [GO:0004871 "signal transducer activity"
evidence=ISS] [GO:0007165 "signal transduction" evidence=ISS]
InterPro:IPR001054 InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110
SMART:SM00448 Pfam:PF00990 GO:GO:0006355 EMBL:CP000236
GenomeReviews:CP000236_GR GO:GO:0005622 SUPFAM:SSF55073
GO:GO:0016849 GO:GO:0009190 InterPro:IPR000160 SMART:SM00267
TIGRFAMs:TIGR00254 PROSITE:PS50887 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 eggNOG:COG3706 KO:K02488 HOGENOM:HOG000167204
ProtClustDB:PRK09581 RefSeq:YP_507571.1 ProteinModelPortal:Q2GG62
STRING:Q2GG62 GeneID:3927207 KEGG:ech:ECH_0773 PATRIC:20576976
OMA:PDICARY BioCyc:ECHA205920:GJNR-776-MONOMER Uniprot:Q2GG62
Length = 458
Score = 115 (45.5 bits), Expect = 0.00017, P = 0.00017
Identities = 31/90 (34%), Positives = 50/90 (55%)
Query: 78 NGFDGLKV------DLIITDYCMPGMTGYELLKKIKDSSALREIPVVIMSS-ENILARID 130
NG D +K+ D+I+ D MP M GYE K++K + IP+V++++ +N
Sbjct: 34 NGMDAIKIAEEKHPDIILLDVMMPEMDGYETCKRLKSNPETTYIPIVMVTALDNTSDNRV 93
Query: 131 RCLEDGAEDFIVKPVKLSDV-KRIKDYLTR 159
L GA+DF+ KP+ + + RI+ LTR
Sbjct: 94 SGLSYGADDFLTKPINDTALFARIRS-LTR 122
>UNIPROTKB|P07545 [details] [associations]
symbol:virG "Regulatory protein VirG" species:176299
"Agrobacterium fabrum str. C58" [GO:0000156 "phosphorelay response
regulator activity" evidence=TAS] [GO:0035556 "intracellular signal
transduction" evidence=TAS] InterPro:IPR001789 InterPro:IPR001867
InterPro:IPR016032 Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110
SMART:SM00448 SMART:SM00862 GO:GO:0005737 GO:GO:0006355
GO:GO:0003677 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0006351
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG0745
HOGENOM:HOG000034819 SUPFAM:SSF46894 EMBL:J03320 EMBL:AE007871
GenomeReviews:AE007871_GR EMBL:Y00535 EMBL:M36786 EMBL:U16142
PIR:AH3249 PIR:S03760 RefSeq:NP_396499.1 ProteinModelPortal:P07545
STRING:P07545 GeneID:1137501 KEGG:atu:Atu6178 PATRIC:20820556
OMA:FLARIRV ProtClustDB:PRK13856 Uniprot:P07545
Length = 253
Score = 111 (44.1 bits), Expect = 0.00018, P = 0.00018
Identities = 36/116 (31%), Positives = 57/116 (49%)
Query: 31 HVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIIT 90
HVL +DD R +I LTI + KVTAV ++ + L + VD+++
Sbjct: 15 HVLVIDDDVAMRHLIVEYLTIHAFKVTAVADSKQFNRVLCSET-----------VDVVVV 63
Query: 91 DYCMPGMTGYELLKKIKDSSALREIPVVIMSSENILARIDR--CLEDGAEDFIVKP 144
D + G E+++ + S ++P++I+S L D+ LE GA DFI KP
Sbjct: 64 DLNLGREDGLEIVRSLATKS---DVPIIIISGAR-LEEADKVIALELGATDFIAKP 115
>NCBI_NP|NP_396499.1 [details] [associations]
symbol:virG "twocomponentresponseregulator"
species:176299 "Agrobacterium fabrum str. C58" [GO:0000156
"phosphorelay response regulator activity" evidence=TAS]
REFSEQ:NC_003065 Ncbi:NP_396499
Length = 253
Score = 111 (44.1 bits), Expect = 0.00018, P = 0.00018
Identities = 36/116 (31%), Positives = 57/116 (49%)
Query: 31 HVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIIT 90
HVL +DD R +I LTI + KVTAV ++ + L + VD+++
Sbjct: 15 HVLVIDDDVAMRHLIVEYLTIHAFKVTAVADSKQFNRVLCSET-----------VDVVVV 63
Query: 91 DYCMPGMTGYELLKKIKDSSALREIPVVIMSSENILARIDR--CLEDGAEDFIVKP 144
D + G E+++ + S ++P++I+S L D+ LE GA DFI KP
Sbjct: 64 DLNLGREDGLEIVRSLATKS---DVPIIIISGAR-LEEADKVIALELGATDFIAKP 115
>UNIPROTKB|P0AFB8 [details] [associations]
symbol:glnG "NtrC transcriptional dual regulator"
species:83333 "Escherichia coli K-12" [GO:0050906 "detection of
stimulus involved in sensory perception" evidence=IEA] [GO:0017111
"nucleoside-triphosphatase activity" evidence=IEA] [GO:0008134
"transcription factor binding" evidence=IEA] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=IEA] [GO:0000156 "phosphorelay response regulator
activity" evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0005622 "intracellular"
evidence=IEA] [GO:0035556 "intracellular signal transduction"
evidence=IEA] [GO:0009399 "nitrogen fixation" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000160 "phosphorelay signal transduction system" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
InterPro:IPR001789 InterPro:IPR002078 InterPro:IPR002197
InterPro:IPR003593 InterPro:IPR009057 InterPro:IPR010114
Pfam:PF00072 Pfam:PF00158 Pfam:PF02954 PRINTS:PR01590
PROSITE:PS50045 PROSITE:PS50110 SMART:SM00382 SMART:SM00448
GO:GO:0005524 GO:GO:0035556 GO:GO:0009399 EMBL:U00096 EMBL:AP009048
GenomeReviews:AP009048_GR GenomeReviews:U00096_GR GO:GO:0003677
GO:GO:0003700 GO:GO:0006351 GO:GO:0005622 Gene3D:1.10.10.60
SUPFAM:SSF46689 GO:GO:0017111 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 EMBL:L19201 eggNOG:COG2204 HOGENOM:HOG000058489
InterPro:IPR025662 InterPro:IPR025943 InterPro:IPR025944
PROSITE:PS00675 PROSITE:PS00676 PROSITE:PS00688 EMBL:X05173
EMBL:D16509 PIR:B30377 RefSeq:NP_418304.1 RefSeq:YP_491582.1
ProteinModelPortal:P0AFB8 SMR:P0AFB8 IntAct:P0AFB8
EnsemblBacteria:EBESCT00000001207 EnsemblBacteria:EBESCT00000001208
EnsemblBacteria:EBESCT00000001209 EnsemblBacteria:EBESCT00000015316
GeneID:12933634 GeneID:948361 KEGG:ecj:Y75_p3318 KEGG:eco:b3868
PATRIC:32123239 EchoBASE:EB0380 EcoGene:EG10385 KO:K07712
OMA:ARGQSNL ProtClustDB:PRK10923 BioCyc:EcoCyc:PROTEIN-NRI
BioCyc:ECOL316407:JW3839-MONOMER BindingDB:P0AFB8 ChEMBL:CHEMBL3552
Genevestigator:P0AFB8 GO:GO:0050906 TIGRFAMs:TIGR01818
Uniprot:P0AFB8
Length = 469
Score = 115 (45.5 bits), Expect = 0.00018, P = 0.00018
Identities = 35/118 (29%), Positives = 56/118 (47%)
Query: 32 VLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITD 91
V VDD R V+ER L + T ++G L+ L D++++D
Sbjct: 6 VWVVDDDSSIRWVLERALAGAGLTCTTFENGAEVLEALASKTP-----------DVLLSD 54
Query: 92 YCMPGMTGYELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVKLSD 149
MPGM G LLK+IK + +PV+IM++ + L + GA D++ KP + +
Sbjct: 55 IRMPGMDGLALLKQIKQRHPM--LPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDE 110
>TIGR_CMR|BA_1877 [details] [associations]
symbol:BA_1877 "DNA-binding response regulator"
species:198094 "Bacillus anthracis str. Ames" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] InterPro:IPR001789 InterPro:IPR001867
Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110 SMART:SM00448
SMART:SM00862 GO:GO:0006355 GO:GO:0035556 EMBL:AE016879
EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003677
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005622 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034819
RefSeq:NP_844293.1 RefSeq:YP_018518.1 RefSeq:YP_028003.1
HSSP:Q9WXY0 ProteinModelPortal:Q81S03 DNASU:1087421
EnsemblBacteria:EBBACT00000008114 EnsemblBacteria:EBBACT00000014243
EnsemblBacteria:EBBACT00000023021 GeneID:1087421 GeneID:2817591
GeneID:2853065 KEGG:ban:BA_1877 KEGG:bar:GBAA_1877 KEGG:bat:BAS1739
OMA:ANLMQEG ProtClustDB:CLSK584084
BioCyc:BANT260799:GJAJ-1808-MONOMER
BioCyc:BANT261594:GJ7F-1884-MONOMER Uniprot:Q81S03
Length = 232
Score = 110 (43.8 bits), Expect = 0.00018, P = 0.00018
Identities = 35/135 (25%), Positives = 71/135 (52%)
Query: 28 EEVHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDL 87
E+ +L VDD D+ ++ R + ++ + G + F + E+++ + + L
Sbjct: 2 EKNSILIVDD---DQDIV-RFMNVN-----LMQEGFKV--FSAYNGEEALEIINNNSIQL 50
Query: 88 IITDYCMPGMTGYELLKKIKDSSALREIPVVIMSSENILARIDRCL--EDGAEDFIVKPV 145
I D MP M G EL ++I++ +L P++ +S+++ + +D+ + GA+D+IVKP
Sbjct: 51 AILDIMMPQMDGIELCRRIREKHSL---PIIFLSAKS--SDVDKVVGFSTGADDYIVKPF 105
Query: 146 KLSD-VKRIKDYLTR 159
+ + R+K L R
Sbjct: 106 STIEFIARVKAQLRR 120
>TIGR_CMR|SPO_2629 [details] [associations]
symbol:SPO_2629 "C4-dicarboxylate transport
transcriptional regulatory protein" species:246200 "Ruegeria
pomeroyi DSS-3" [GO:0000156 "phosphorelay response regulator
activity" evidence=ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=ISS] [GO:0015740 "C4-dicarboxylate
transport" evidence=ISS] InterPro:IPR001789 InterPro:IPR002078
InterPro:IPR002197 InterPro:IPR009057 Pfam:PF00072 Pfam:PF00158
Pfam:PF02954 PRINTS:PR01590 PROSITE:PS50045 PROSITE:PS50110
SMART:SM00448 GO:GO:0005524 GO:GO:0035556 EMBL:CP000031
GenomeReviews:CP000031_GR GO:GO:0003677 GO:GO:0003700 GO:GO:0006351
GO:GO:0005622 Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000058489 KO:K10126
RefSeq:YP_167839.1 ProteinModelPortal:Q5LQ67 DNASU:3194353
GeneID:3194353 KEGG:sil:SPO2629 PATRIC:23378667 OMA:TFYDKLA
ProtClustDB:CLSK751600 Uniprot:Q5LQ67
Length = 409
Score = 114 (45.2 bits), Expect = 0.00019, P = 0.00019
Identities = 34/119 (28%), Positives = 58/119 (48%)
Query: 32 VLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITD 91
VL VDD R+ + + L ++ V S F+ + + FDG+ I++D
Sbjct: 5 VLLVDDDAAVREALGQTLDLADYAVQTAGS------FVAAKDHITAT-FDGV----IVSD 53
Query: 92 YCMPGMTGYELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVKLSDV 150
MPG G+ LL +D ++PV++++ E + R + DGA DF+ KP +D+
Sbjct: 54 IRMPGRDGFHLLSYAQDIDP--DLPVILLTGEGDIPMAVRAMGDGAFDFLEKPCAAADL 110
>UNIPROTKB|Q74CL9 [details] [associations]
symbol:GSU1654 "Response receiver-modulated cyclic
diguanylate phosphodiesterase" species:243231 "Geobacter
sulfurreducens PCA" [GO:0003674 "molecular_function" evidence=ND]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR001789
InterPro:IPR003607 InterPro:IPR006674 Pfam:PF00072 PROSITE:PS50110
SMART:SM00448 SMART:SM00471 GO:GO:0006355 GO:GO:0035556
GO:GO:0046872 GO:GO:0008152 GO:GO:0005622 EMBL:AE017180
GenomeReviews:AE017180_GR GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 GO:GO:0008081 Gene3D:1.10.3210.10
InterPro:IPR006675 TIGRFAMs:TIGR00277 HOGENOM:HOG000266481
RefSeq:NP_952705.1 ProteinModelPortal:Q74CL9 GeneID:2687011
KEGG:gsu:GSU1654 PATRIC:22026155 OMA:IVLSHQE ProtClustDB:CLSK828468
BioCyc:GSUL243231:GH27-1639-MONOMER Uniprot:Q74CL9
Length = 349
Score = 113 (44.8 bits), Expect = 0.00019, P = 0.00019
Identities = 39/123 (31%), Positives = 66/123 (53%)
Query: 32 VLAVDDSFVDRKVIERLLTISSCKVTAVD-SGRRALQFLGLDEEQSINGFDGLKVDLIIT 90
+L VDD ++I LL VTA+ G Q DE + + +V+L +
Sbjct: 5 ILTVDDE----EMIRDLL------VTALSREGYDCFQAGSADEARDV--LLNNRVELALL 52
Query: 91 DYCMPGMTGYELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVKLSDV 150
D MPG +G +LLK+IK SA + V+++++ + + RC+ GA+D+I+KP D+
Sbjct: 53 DIMMPGTSGVDLLKEIKKISA--DTVVLMVTAISDMETAMRCIHLGADDYILKPF---DI 107
Query: 151 KRI 153
+R+
Sbjct: 108 ERV 110
>TIGR_CMR|GSU_1654 [details] [associations]
symbol:GSU_1654 "response regulator, putative"
species:243231 "Geobacter sulfurreducens PCA" [GO:0003674
"molecular_function" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR001789 InterPro:IPR003607
InterPro:IPR006674 Pfam:PF00072 PROSITE:PS50110 SMART:SM00448
SMART:SM00471 GO:GO:0006355 GO:GO:0035556 GO:GO:0046872
GO:GO:0008152 GO:GO:0005622 EMBL:AE017180 GenomeReviews:AE017180_GR
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172 GO:GO:0008081
Gene3D:1.10.3210.10 InterPro:IPR006675 TIGRFAMs:TIGR00277
HOGENOM:HOG000266481 RefSeq:NP_952705.1 ProteinModelPortal:Q74CL9
GeneID:2687011 KEGG:gsu:GSU1654 PATRIC:22026155 OMA:IVLSHQE
ProtClustDB:CLSK828468 BioCyc:GSUL243231:GH27-1639-MONOMER
Uniprot:Q74CL9
Length = 349
Score = 113 (44.8 bits), Expect = 0.00019, P = 0.00019
Identities = 39/123 (31%), Positives = 66/123 (53%)
Query: 32 VLAVDDSFVDRKVIERLLTISSCKVTAVD-SGRRALQFLGLDEEQSINGFDGLKVDLIIT 90
+L VDD ++I LL VTA+ G Q DE + + +V+L +
Sbjct: 5 ILTVDDE----EMIRDLL------VTALSREGYDCFQAGSADEARDV--LLNNRVELALL 52
Query: 91 DYCMPGMTGYELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVKLSDV 150
D MPG +G +LLK+IK SA + V+++++ + + RC+ GA+D+I+KP D+
Sbjct: 53 DIMMPGTSGVDLLKEIKKISA--DTVVLMVTAISDMETAMRCIHLGADDYILKPF---DI 107
Query: 151 KRI 153
+R+
Sbjct: 108 ERV 110
>UNIPROTKB|Q9KNL8 [details] [associations]
symbol:VC_2714 "Transcriptional regulator OmpR"
species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] InterPro:IPR001789 InterPro:IPR001867
Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110 SMART:SM00448
SMART:SM00862 GO:GO:0035556 GO:GO:0003677 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0003700 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0005622 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 KO:K07659 ProtClustDB:PRK09468 OMA:AANSEQM
HSSP:P03025 PIR:C82042 RefSeq:NP_232341.1 ProteinModelPortal:Q9KNL8
SMR:Q9KNL8 DNASU:2615542 GeneID:2615542 KEGG:vch:VC2714
PATRIC:20084446 Uniprot:Q9KNL8
Length = 240
Score = 110 (43.8 bits), Expect = 0.00020, P = 0.00020
Identities = 40/137 (29%), Positives = 72/137 (52%)
Query: 29 EVH-VLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDL 87
E H VL VDD R ++ER L+ +V +V +G + +D + F L
Sbjct: 3 ENHKVLVVDDDARLRALLERYLSEQGFQVRSVANGEQ------MDRLLTRENFH-----L 51
Query: 88 IITDYCMPGMTGYELLKKIKDSSALREIPVVIMSSENILARIDRC--LEDGAEDFIVKPV 145
++ D +PG G + +++++S+ + IP+++++++ IDR LE GA+D++ KP
Sbjct: 52 MVLDLMLPGEDGLSICRRLRNSNNM--IPILMLTAKG--DEIDRIVGLEVGADDYLPKPF 107
Query: 146 KLSDV-KRIKDYLTRDV 161
++ RIK L R V
Sbjct: 108 NPRELLARIKAVLRRQV 124
>TIGR_CMR|VC_2714 [details] [associations]
symbol:VC_2714 "transcriptional regulator OmpR,"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] InterPro:IPR001789 InterPro:IPR001867
Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110 SMART:SM00448
SMART:SM00862 GO:GO:0035556 GO:GO:0003677 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0003700 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0005622 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 KO:K07659 ProtClustDB:PRK09468 OMA:AANSEQM
HSSP:P03025 PIR:C82042 RefSeq:NP_232341.1 ProteinModelPortal:Q9KNL8
SMR:Q9KNL8 DNASU:2615542 GeneID:2615542 KEGG:vch:VC2714
PATRIC:20084446 Uniprot:Q9KNL8
Length = 240
Score = 110 (43.8 bits), Expect = 0.00020, P = 0.00020
Identities = 40/137 (29%), Positives = 72/137 (52%)
Query: 29 EVH-VLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDL 87
E H VL VDD R ++ER L+ +V +V +G + +D + F L
Sbjct: 3 ENHKVLVVDDDARLRALLERYLSEQGFQVRSVANGEQ------MDRLLTRENFH-----L 51
Query: 88 IITDYCMPGMTGYELLKKIKDSSALREIPVVIMSSENILARIDRC--LEDGAEDFIVKPV 145
++ D +PG G + +++++S+ + IP+++++++ IDR LE GA+D++ KP
Sbjct: 52 MVLDLMLPGEDGLSICRRLRNSNNM--IPILMLTAKG--DEIDRIVGLEVGADDYLPKPF 107
Query: 146 KLSDV-KRIKDYLTRDV 161
++ RIK L R V
Sbjct: 108 NPRELLARIKAVLRRQV 124
>UNIPROTKB|O25153 [details] [associations]
symbol:C694_01990 "Histidine kinase CheA" species:85962
"Helicobacter pylori 26695" [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR001789 InterPro:IPR002545
InterPro:IPR003594 InterPro:IPR004105 InterPro:IPR004358
InterPro:IPR008207 InterPro:IPR009082 Pfam:PF00072 Pfam:PF01584
Pfam:PF01627 Pfam:PF02518 Pfam:PF02895 PRINTS:PR00344
PROSITE:PS50110 PROSITE:PS50851 PROSITE:PS50894 SMART:SM00073
SMART:SM00260 SMART:SM00387 SMART:SM00448 InterPro:IPR005467
GO:GO:0005524 GO:GO:0005737 GO:GO:0006355 GO:GO:0035556
GO:GO:0006935 GO:GO:0023014 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 GO:GO:0000155 Gene3D:3.30.565.10 SUPFAM:SSF55874
SUPFAM:SSF47384 PROSITE:PS50109 Gene3D:1.20.120.160 SUPFAM:SSF47226
EMBL:AE000511 GenomeReviews:AE000511_GR KO:K03407
Gene3D:1.10.287.560 SUPFAM:SSF50341 EMBL:CP003904 PIR:H64568
RefSeq:NP_207190.1 RefSeq:YP_006934316.1 HSSP:Q56310 DIP:DIP-3162N
MINT:MINT-160605 GeneID:13869578 GeneID:898900 KEGG:heo:C694_01990
KEGG:hpy:HP0392 PATRIC:20592023 OMA:CDHGIED ProtClustDB:CLSK872488
Uniprot:O25153
Length = 803
Score = 117 (46.2 bits), Expect = 0.00021, P = 0.00021
Identities = 37/124 (29%), Positives = 60/124 (48%)
Query: 23 SPSDTEEVHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDG 82
SPSD VLA+DDS DR +I + L + +G L+ L NG D
Sbjct: 673 SPSD---YIVLAIDDSSTDRAIIRKCLKPLGITLLEATNGLEGLEMLK-------NG-DK 721
Query: 83 LKVDLIITDYCMPGMTGYELLKKIKDSSALREIPVVIMSSENILARIDRC--LEDGAEDF 140
+ D I+ D MP M GY +++ + + +P++ ++S + + DR +E G ++
Sbjct: 722 IP-DAILVDIEMPKMDGYTFASEVRKYNKFKNLPLIAVTSR--VTKTDRMRGVESGMTEY 778
Query: 141 IVKP 144
I KP
Sbjct: 779 ITKP 782
>TIGR_CMR|CHY_1855 [details] [associations]
symbol:CHY_1855 "sigma-54 dependent transcriptional
regulator/response regulator" species:246194 "Carboxydothermus
hydrogenoformans Z-2901" [GO:0000156 "phosphorelay response
regulator activity" evidence=ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=ISS] [GO:0003700 "sequence-specific
DNA binding transcription factor activity" evidence=ISS]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=ISS] InterPro:IPR001789 InterPro:IPR002078
InterPro:IPR002197 InterPro:IPR003593 InterPro:IPR009057
Pfam:PF00072 Pfam:PF00158 Pfam:PF02954 PRINTS:PR01590
PROSITE:PS50045 PROSITE:PS50110 SMART:SM00382 SMART:SM00448
GO:GO:0005524 GO:GO:0035556 GO:GO:0003677 EMBL:CP000141
GenomeReviews:CP000141_GR GO:GO:0003700 GO:GO:0006351 GO:GO:0005622
Gene3D:1.10.10.60 SUPFAM:SSF46689 GO:GO:0017111 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG2204
HOGENOM:HOG000058489 InterPro:IPR025662 InterPro:IPR025944
PROSITE:PS00675 PROSITE:PS00688 RefSeq:YP_360675.1
ProteinModelPortal:Q3AB09 STRING:Q3AB09 GeneID:3727631
KEGG:chy:CHY_1855 PATRIC:21276809 KO:K02481 OMA:NTRELFH
ProtClustDB:CLSK928866 BioCyc:CHYD246194:GJCN-1854-MONOMER
Uniprot:Q3AB09
Length = 443
Score = 114 (45.2 bits), Expect = 0.00022, P = 0.00022
Identities = 35/124 (28%), Positives = 62/124 (50%)
Query: 28 EEVHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDL 87
E + VL VDD R ++ + LT +V +G ALQFL +E++ + L
Sbjct: 3 ETIKVLVVDDEENFRDLLIQRLTRKGYEVKGAATGEEALQFL---KEETFH--------L 51
Query: 88 IITDYCMPGMTGYELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVKL 147
I D MPG+ G ELL++ + + V+I++ + ++ GA D++ KP L
Sbjct: 52 AIFDIKMPGIDGIELLQRARQLD--ENLQVIILTGHGTIESAIGAMKLGAYDYLTKPCNL 109
Query: 148 SDVK 151
++++
Sbjct: 110 AELE 113
>DICTYBASE|DDB_G0282377 [details] [associations]
symbol:dhkM "histidine kinase M" species:44689
"Dictyostelium discoideum" [GO:0048102 "autophagic cell death"
evidence=IMP] [GO:0035556 "intracellular signal transduction"
evidence=IEA] [GO:0016772 "transferase activity, transferring
phosphorus-containing groups" evidence=IEA] [GO:0016310
"phosphorylation" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0000160 "phosphorelay signal
transduction system" evidence=IEA] [GO:0000156 "phosphorelay
response regulator activity" evidence=IEA] [GO:0004673 "protein
histidine kinase activity" evidence=IEA] [GO:0016740 "transferase
activity" evidence=IEA] [GO:0016301 "kinase activity" evidence=IEA]
[GO:0016021 "integral to membrane" evidence=IEA] [GO:0016020
"membrane" evidence=IEA] [GO:0007165 "signal transduction"
evidence=IEA] [GO:0004871 "signal transducer activity"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR001789 InterPro:IPR003594 InterPro:IPR004358
Pfam:PF00072 Pfam:PF02518 PRINTS:PR00344 PROSITE:PS50110
SMART:SM00387 SMART:SM00448 InterPro:IPR005467
dictyBase:DDB_G0282377 GO:GO:0016021 GO:GO:0005524 GO:GO:0006355
GO:GO:0035556 EMBL:AAFI02000047 GenomeReviews:CM000152_GR
GO:GO:0005622 GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
HSSP:P39928 Gene3D:3.30.565.10 SUPFAM:SSF55874 PROSITE:PS50109
eggNOG:COG0642 GO:GO:0004673 GO:GO:0048102 EMBL:AF362374
RefSeq:XP_640034.1 ProteinModelPortal:Q54SK5
EnsemblProtists:DDB0220020 GeneID:8623560 KEGG:ddi:DDB_G0282377
OMA:NTSTINP Uniprot:Q54SK5
Length = 2388
Score = 121 (47.7 bits), Expect = 0.00023, P = 0.00023
Identities = 29/116 (25%), Positives = 65/116 (56%)
Query: 30 VHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLII 89
V++L V+D+ V+ K+ +L + +V +G+ A++ + +QS + FD + +D+ +
Sbjct: 2261 VNILLVEDNLVNAKIAMTVLRKHNFRVELSKNGQLAMERI----KQSHSSFDLILMDIHM 2316
Query: 90 TDYCMPGMTGYELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPV 145
M G+T +L +K + L+ +P++ ++++ + CLE G +F+ KP+
Sbjct: 2317 P--VMDGITCSKLTRKFETEHGLKHLPIIALTADATTGHKNLCLEAGCNEFMSKPL 2370
>TIGR_CMR|DET_0300 [details] [associations]
symbol:DET_0300 "DNA-binding response regulator"
species:243164 "Dehalococcoides ethenogenes 195" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
InterPro:IPR001789 InterPro:IPR001867 InterPro:IPR016032
Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110 SMART:SM00448
SMART:SM00862 GO:GO:0006355 GO:GO:0035556 GO:GO:0003677
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0006351 GO:GO:0005622
EMBL:CP000027 GenomeReviews:CP000027_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG0745
HOGENOM:HOG000034819 SUPFAM:SSF46894 RefSeq:YP_181048.1
ProteinModelPortal:Q3Z9Q1 STRING:Q3Z9Q1 GeneID:3230339
KEGG:det:DET0300 PATRIC:21607673 OMA:GIKYGHW ProtClustDB:CLSK837537
BioCyc:DETH243164:GJNF-300-MONOMER Uniprot:Q3Z9Q1
Length = 225
Score = 109 (43.4 bits), Expect = 0.00023, P = 0.00023
Identities = 40/140 (28%), Positives = 73/140 (52%)
Query: 32 VLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITD 91
+L ++D D+K++E + + K D +A+ LG +++ D D+ I D
Sbjct: 3 LLFIED---DKKIVESVFLLF--KSFWPDMETKAVH-LGKTGIEAVYKDD---FDIAIID 53
Query: 92 YCMPGMTGYELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVK-LSDV 150
+P + G +LK+I+ S+L P++I+++ N I E GA+D+I KP + L +
Sbjct: 54 LGLPDIDGINVLKQIRAFSSL---PILILTARNNEQEIFTAFELGADDYITKPFQPLELI 110
Query: 151 KRIKDYLTRDVNLGNEGRGI 170
R+K L R +N ++ GI
Sbjct: 111 ARVKSLLKR-LNKTSQDLGI 129
>TIGR_CMR|SO_0545 [details] [associations]
symbol:SO_0545 "response regulator" species:211586
"Shewanella oneidensis MR-1" [GO:0000156 "phosphorelay response
regulator activity" evidence=ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=ISS] InterPro:IPR001054
InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110 SMART:SM00448
Pfam:PF00990 Pfam:PF00563 GO:GO:0006355 GO:GO:0005622 EMBL:AE014299
GenomeReviews:AE014299_GR SUPFAM:SSF55073 GO:GO:0052621
GO:GO:0016849 GO:GO:0009190 InterPro:IPR000160 SMART:SM00267
TIGRFAMs:TIGR00254 PROSITE:PS50887 Gene3D:3.20.20.450
InterPro:IPR001633 SMART:SM00052 SUPFAM:SSF141868 PROSITE:PS50883
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
HOGENOM:HOG000136246 RefSeq:NP_716181.2 ProteinModelPortal:Q8EJC2
GeneID:1168414 KEGG:son:SO_0545 PATRIC:23520772 OMA:NGLPANC
ProtClustDB:CLSK905801 Uniprot:Q8EJC2
Length = 573
Score = 115 (45.5 bits), Expect = 0.00024, P = 0.00024
Identities = 40/113 (35%), Positives = 58/113 (51%)
Query: 32 VLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITD 91
+L +DD VDR I R L S V++ A L L ++ FDG I+ D
Sbjct: 3 LLLIDDDEVDRTAIIRALRQSKLAFNVVEANC-AFDGLNLALQRH---FDG-----ILLD 53
Query: 92 YCMPGMTGYELLKKIKDSSALREIPVVIMSSENILARI-DRCLEDGAEDFIVK 143
Y +P G E+L IK +S +E VV+M S ++ RC+E GA+DF++K
Sbjct: 54 YLLPDANGLEVL--IKLNSMTQEQTVVVMLSRYEDEKLAQRCIELGAQDFLLK 104
>UNIPROTKB|O53894 [details] [associations]
symbol:mprA "Response regulator MprA" species:1773
"Mycobacterium tuberculosis" [GO:0000160 "phosphorelay signal
transduction system" evidence=IDA] [GO:0003677 "DNA binding"
evidence=IDA] [GO:0005618 "cell wall" evidence=IDA] [GO:0005886
"plasma membrane" evidence=IDA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IDA] [GO:0006950 "response
to stress" evidence=IEP] [GO:0045892 "negative regulation of
transcription, DNA-dependent" evidence=IDA] [GO:0045893 "positive
regulation of transcription, DNA-dependent" evidence=IDA]
[GO:0090034 "regulation of chaperone-mediated protein complex
assembly" evidence=IDA] InterPro:IPR001789 InterPro:IPR001867
Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110 SMART:SM00448
SMART:SM00862 GO:GO:0005886 GO:GO:0005737 GO:GO:0005618
GO:GO:0045892 GO:GO:0045893 GO:GO:0009405 GO:GO:0006950
EMBL:BX842575 EMBL:AE000516 GenomeReviews:AE000516_GR
GenomeReviews:AL123456_GR GO:GO:0035556 GO:GO:0003677
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0006351 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 GO:GO:0000160 eggNOG:COG0745
HOGENOM:HOG000034815 GO:GO:0090034 PIR:A70821 RefSeq:NP_215496.1
RefSeq:NP_335443.1 RefSeq:YP_006514341.1 HSSP:P0A5Z6
ProteinModelPortal:O53894 SMR:O53894 PRIDE:O53894
EnsemblBacteria:EBMYCT00000001458 EnsemblBacteria:EBMYCT00000070763
GeneID:13319541 GeneID:885038 GeneID:925187 KEGG:mtc:MT1009
KEGG:mtu:Rv0981 KEGG:mtv:RVBD_0981 PATRIC:18123964
TubercuList:Rv0981 KO:K07669 OMA:MLMANPR ProtClustDB:CLSK790869
Uniprot:O53894
Length = 230
Score = 109 (43.4 bits), Expect = 0.00025, P = 0.00025
Identities = 30/131 (22%), Positives = 65/131 (49%)
Query: 30 VHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLII 89
V +L VDD R+ + R L+ + V G AL + D + D ++
Sbjct: 3 VRILVVDDDRAVRESLRRSLSFNGYSVELAHDGVEALDMIASD-----------RPDALV 51
Query: 90 TDYCMPGMTGYELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVKLSD 149
D MP + G E+ ++++ + ++P++++++ + ++ L+ GA+D++ KP L +
Sbjct: 52 LDVMMPRLDGLEVCRQLRGTGD--DLPILVLTARDSVSERVAGLDAGADDYLPKPFALEE 109
Query: 150 V-KRIKDYLTR 159
+ R++ L R
Sbjct: 110 LLARMRALLRR 120
>TIGR_CMR|SPO_0094 [details] [associations]
symbol:SPO_0094 "sensory box sensor histidine
kinase/response regulator" species:246200 "Ruegeria pomeroyi DSS-3"
[GO:0000155 "phosphorelay sensor kinase activity" evidence=ISS]
[GO:0000156 "phosphorelay response regulator activity"
evidence=ISS] [GO:0000160 "phosphorelay signal transduction system"
evidence=ISS] [GO:0004871 "signal transducer activity"
evidence=ISS] InterPro:IPR000014 InterPro:IPR000700
InterPro:IPR001789 InterPro:IPR003594 InterPro:IPR003661
InterPro:IPR004358 InterPro:IPR009082 Pfam:PF00072 Pfam:PF00512
Pfam:PF02518 PRINTS:PR00344 PROSITE:PS50110 PROSITE:PS50112
PROSITE:PS50113 SMART:SM00091 SMART:SM00387 SMART:SM00388
SMART:SM00448 InterPro:IPR005467 InterPro:IPR001610 GO:GO:0005524
GO:GO:0016020 GO:GO:0006355 GO:GO:0035556 EMBL:CP000031
GenomeReviews:CP000031_GR GO:GO:0005622 GO:GO:0023014 SMART:SM00086
TIGRFAMs:TIGR00229 GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
GO:GO:0000155 Gene3D:1.10.287.130 Gene3D:3.30.565.10
SUPFAM:SSF55874 SUPFAM:SSF47384 PROSITE:PS50109 KO:K00936
RefSeq:YP_165368.1 ProteinModelPortal:Q5LWQ3 GeneID:3196418
KEGG:sil:SPO0094 PATRIC:23373425 HOGENOM:HOG000014353 OMA:ASTHEMC
ProtClustDB:CLSK933154 Uniprot:Q5LWQ3
Length = 743
Score = 116 (45.9 bits), Expect = 0.00025, P = 0.00025
Identities = 36/138 (26%), Positives = 70/138 (50%)
Query: 18 DGFDLSPSDTEEVH---VLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEE 74
DG LSP++ + + VL DD+ V+R ++ + L ++ G++A+ + +
Sbjct: 600 DGQVLSPAELDRLRGLRVLVADDNRVNRLLMGKFLADLPIRLDFAHDGQQAV---AMTQR 656
Query: 75 QSINGFDGLKVDLIITDYCMPGMTGYELLKKIKDSSALREIPVVIMSSENILARIDRCLE 134
Q K D++ D MP M+G E ++I+ + R+ +V +++ + + CL
Sbjct: 657 Q--------KPDIVFMDMSMPVMSGIEATRQIRAAEG-RQPLIVALTANTFDSDREACLA 707
Query: 135 DGAEDFIVKPVKLSDVKR 152
G +DF+ KPV +D+ R
Sbjct: 708 AGMDDFLSKPVGRADLFR 725
>TIGR_CMR|BA_0287 [details] [associations]
symbol:BA_0287 "DNA-binding response regulator"
species:198094 "Bacillus anthracis str. Ames" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0003677 "DNA binding" evidence=ISS] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=ISS] InterPro:IPR001789
InterPro:IPR001867 Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110
SMART:SM00448 SMART:SM00862 GO:GO:0006355 GO:GO:0035556
EMBL:AE016879 EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003677
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005622 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034819 HSSP:P08402
RefSeq:NP_842837.1 RefSeq:YP_016897.1 RefSeq:YP_026554.1
ProteinModelPortal:Q81VC5 DNASU:1085878
EnsemblBacteria:EBBACT00000011028 EnsemblBacteria:EBBACT00000016417
EnsemblBacteria:EBBACT00000022481 GeneID:1085878 GeneID:2819460
GeneID:2851280 KEGG:ban:BA_0287 KEGG:bar:GBAA_0287 KEGG:bat:BAS0273
OMA:NYNLVIL ProtClustDB:CLSK917934
BioCyc:BANT260799:GJAJ-313-MONOMER
BioCyc:BANT261594:GJ7F-322-MONOMER Uniprot:Q81VC5
Length = 237
Score = 109 (43.4 bits), Expect = 0.00027, P = 0.00027
Identities = 26/98 (26%), Positives = 57/98 (58%)
Query: 71 LDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKKIKDSSALREIPVVIMSSENILARID 130
+D E ++ F+ ++I D MP + G E+ +K++D + +P++++++++ +D
Sbjct: 34 IDGEVALQLFNQNNYSIVILDLMMPKVDGIEVCRKLRDKT---NVPILMLTAKD--HEVD 88
Query: 131 RCL--EDGAEDFIVKPVKLSDV-KRIKDYLTRDVNLGN 165
+ L GA+D+I KP + +V R+K + R + LG+
Sbjct: 89 KILGLSIGADDYITKPFSIHEVVARVKALIRRFLVLGS 126
>TIGR_CMR|GSU_1879 [details] [associations]
symbol:GSU_1879 "DNA-binding response regulator"
species:243231 "Geobacter sulfurreducens PCA" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0003677 "DNA binding" evidence=ISS] InterPro:IPR001789
InterPro:IPR001867 Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110
SMART:SM00448 SMART:SM00862 GO:GO:0006355 GO:GO:0035556
GO:GO:0003677 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005622
EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034819 HSSP:P08402
RefSeq:NP_952928.1 ProteinModelPortal:Q74BZ8 GeneID:2688525
KEGG:gsu:GSU1879 PATRIC:22026623 OMA:SHVESGE ProtClustDB:CLSK828616
BioCyc:GSUL243231:GH27-1891-MONOMER Uniprot:Q74BZ8
Length = 238
Score = 109 (43.4 bits), Expect = 0.00027, P = 0.00027
Identities = 36/134 (26%), Positives = 72/134 (53%)
Query: 28 EEVHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDL 87
++ H+L V+D + I L + +V+ V+SG AL+ L D + L
Sbjct: 4 DKPHILLVEDEIHLARGICFNLEMEGYRVSHVESGEAALERLTYD-----------RFAL 52
Query: 88 IITDYCMPGMTGYELLKKIKDSSALREIPVVIMSSE-NILARIDRCLEDGAEDFIVKPVK 146
II D +PG+ G+ + ++++ + A +P++I+++ + RI L+ GA+D++ KP
Sbjct: 53 IILDVMLPGIDGFTVCERVRATDA--RVPILILTARADDGDRITG-LDRGADDYLTKPFN 109
Query: 147 LSD-VKRIKDYLTR 159
L++ + R++ L R
Sbjct: 110 LNEFLLRVRGMLRR 123
>DICTYBASE|DDB_G0274101 [details] [associations]
symbol:dokA "histidine kinase DokA" species:44689
"Dictyostelium discoideum" [GO:0006928 "cellular component
movement" evidence=IGI] [GO:0016021 "integral to membrane"
evidence=ISS] [GO:0035556 "intracellular signal transduction"
evidence=IEA;ISS;IDA] [GO:0030435 "sporulation resulting in
formation of a cellular spore" evidence=IMP] [GO:0023014 "signal
transduction by phosphorylation" evidence=IEA;ISS] [GO:0007234
"osmosensory signaling via phosphorelay pathway" evidence=IMP]
[GO:0000160 "phosphorelay signal transduction system"
evidence=IEA;ISS] [GO:0000156 "phosphorelay response regulator
activity" evidence=IEA;ISS;IDA] [GO:0000155 "phosphorelay sensor
kinase activity" evidence=IEA;ISS] [GO:0009927 "histidine
phosphotransfer kinase activity" evidence=ISS] [GO:0016772
"transferase activity, transferring phosphorus-containing groups"
evidence=IEA] [GO:0016310 "phosphorylation" evidence=IEA]
[GO:0016020 "membrane" evidence=IEA] [GO:0007165 "signal
transduction" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0004871 "signal transducer activity"
evidence=IEA] InterPro:IPR000014 InterPro:IPR001789
InterPro:IPR003594 InterPro:IPR003661 InterPro:IPR004358
InterPro:IPR009082 Pfam:PF00072 Pfam:PF00512 Pfam:PF02518
PRINTS:PR00344 PROSITE:PS00086 PROSITE:PS50110 SMART:SM00091
SMART:SM00387 SMART:SM00388 SMART:SM00448 InterPro:IPR005467
dictyBase:DDB_G0274101 GO:GO:0005524 GO:GO:0016020 GO:GO:0006355
GenomeReviews:CM000151_GR GO:GO:0006928 GO:GO:0030435
EMBL:AAFI02000012 GO:GO:0005622 TIGRFAMs:TIGR00229 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG0784 GO:GO:0009927
GO:GO:0000155 Gene3D:1.10.287.130 Gene3D:3.30.565.10
SUPFAM:SSF55874 SUPFAM:SSF47384 PROSITE:PS50109 HSSP:Q9WZV7
EMBL:X96869 PIR:S71628 RefSeq:XP_644179.1 ProteinModelPortal:Q869S5
EnsemblProtists:DDB0185194 GeneID:8619608 KEGG:ddi:DDB_G0274101
OMA:FANERLT GO:GO:0007234 Uniprot:Q869S5
Length = 1671
Score = 119 (46.9 bits), Expect = 0.00028, P = 0.00028
Identities = 38/146 (26%), Positives = 75/146 (51%)
Query: 31 HVLAVDDSFVDRKVIERLLT-ISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLII 89
++L +D+ ++ KV+ R L + + ++ G +AL+ +G + LI+
Sbjct: 1519 YILVAEDNDINIKVVVRQLEKLGYTAIVGIN-GLKALEIIG-----------SFPICLIL 1566
Query: 90 TDYCMPGMTGYE---LLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVK 146
D MP M G+ +L++I+ + + IP++ M++ + DRC E G +D++ KPV+
Sbjct: 1567 LDCQMPQMDGFTCSTILRQIEPTG--QRIPIIAMTANDSK---DRCFEVGMDDYLSKPVR 1621
Query: 147 LSDV-KRIKDYLTRDVNLGNEGRGIN 171
+ + K + D++ D N GN N
Sbjct: 1622 VDRLQKTLSDWIKTDEN-GNPTNSYN 1646
>UNIPROTKB|Q9KRK2 [details] [associations]
symbol:VC_1638 "DNA-binding response regulator"
species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0000156 "phosphorelay response regulator activity"
evidence=ISS] [GO:0000160 "phosphorelay signal transduction system"
evidence=ISS] [GO:0035556 "intracellular signal transduction"
evidence=ISS] InterPro:IPR001789 InterPro:IPR001867 Pfam:PF00072
Pfam:PF00486 PROSITE:PS50110 SMART:SM00448 SMART:SM00862
GO:GO:0006355 GO:GO:0003677 EMBL:AE003852 GenomeReviews:AE003852_GR
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005622 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HSSP:P08402 KO:K02483 PIR:D82176
RefSeq:NP_231275.1 ProteinModelPortal:Q9KRK2 DNASU:2613769
GeneID:2613769 KEGG:vch:VC1638 PATRIC:20082340 OMA:YKVVAYF
ProtClustDB:CLSK874469 Uniprot:Q9KRK2
Length = 219
Score = 108 (43.1 bits), Expect = 0.00028, P = 0.00028
Identities = 32/102 (31%), Positives = 55/102 (53%)
Query: 65 ALQFLGLDEEQSINGFDGL------KVDLIITDYCMPGMTGYELLKKIKDSSALREIPVV 118
AL+ G E + +G D L + D+I+ D +P + G +LK I+D + PVV
Sbjct: 19 ALEQTGWVPELAQDGIDALYRATAEEWDVIVLDLGLPKLDGLTVLKGIRDENI--NTPVV 76
Query: 119 IMSSENILARIDRCLEDGAEDFIVKPVKLSD-VKRIKDYLTR 159
I+S+ + L + L GA+D++ KP ++ + + RI+ L R
Sbjct: 77 ILSARDTLTQRVEGLNAGADDYLTKPFEMVELIARIRAQLRR 118
>TIGR_CMR|VC_1638 [details] [associations]
symbol:VC_1638 "DNA-binding response regulator" species:686
"Vibrio cholerae O1 biovar El Tor" [GO:0000156 "phosphorelay
response regulator activity" evidence=ISS] [GO:0000160
"phosphorelay signal transduction system" evidence=ISS]
InterPro:IPR001789 InterPro:IPR001867 Pfam:PF00072 Pfam:PF00486
PROSITE:PS50110 SMART:SM00448 SMART:SM00862 GO:GO:0006355
GO:GO:0003677 EMBL:AE003852 GenomeReviews:AE003852_GR
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005622 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HSSP:P08402 KO:K02483 PIR:D82176
RefSeq:NP_231275.1 ProteinModelPortal:Q9KRK2 DNASU:2613769
GeneID:2613769 KEGG:vch:VC1638 PATRIC:20082340 OMA:YKVVAYF
ProtClustDB:CLSK874469 Uniprot:Q9KRK2
Length = 219
Score = 108 (43.1 bits), Expect = 0.00028, P = 0.00028
Identities = 32/102 (31%), Positives = 55/102 (53%)
Query: 65 ALQFLGLDEEQSINGFDGL------KVDLIITDYCMPGMTGYELLKKIKDSSALREIPVV 118
AL+ G E + +G D L + D+I+ D +P + G +LK I+D + PVV
Sbjct: 19 ALEQTGWVPELAQDGIDALYRATAEEWDVIVLDLGLPKLDGLTVLKGIRDENI--NTPVV 76
Query: 119 IMSSENILARIDRCLEDGAEDFIVKPVKLSD-VKRIKDYLTR 159
I+S+ + L + L GA+D++ KP ++ + + RI+ L R
Sbjct: 77 ILSARDTLTQRVEGLNAGADDYLTKPFEMVELIARIRAQLRR 118
>TIGR_CMR|GSU_0451 [details] [associations]
symbol:GSU_0451 "DNA-binding response regulator"
species:243231 "Geobacter sulfurreducens PCA" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
InterPro:IPR001789 InterPro:IPR001867 Pfam:PF00072 Pfam:PF00486
PROSITE:PS50110 SMART:SM00448 SMART:SM00862 GO:GO:0006355
GO:GO:0035556 GO:GO:0003677 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0005622 EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034815 HSSP:Q9WYN0
RefSeq:NP_951510.1 ProteinModelPortal:Q74G01 GeneID:2686349
KEGG:gsu:GSU0451 PATRIC:22023646 OMA:MRRSELD ProtClustDB:CLSK827838
BioCyc:GSUL243231:GH27-442-MONOMER Uniprot:Q74G01
Length = 224
Score = 108 (43.1 bits), Expect = 0.00030, P = 0.00030
Identities = 29/119 (24%), Positives = 66/119 (55%)
Query: 55 KVTAVDSGRRALQFL--GLDEEQ-----SINGFDGLKV------DLIITDYCMPGMTGYE 101
KV V+ ++ F+ GL+EE+ + NG +GLK+ DLI+ D +P G
Sbjct: 2 KVLVVEDEKKVSSFIKRGLEEEKYEVDAAFNGEEGLKMALDKGYDLIVLDVMLPKKDGLS 61
Query: 102 LLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVKLSDV-KRIKDYLTR 159
+++++++ PV+++++++ + I L+ G++D++ KP +++ R++ + R
Sbjct: 62 VVRELRERK--NSTPVLMLTAKDSVEDIVAGLDSGSDDYLTKPFAFAELLARVRALVRR 118
>UNIPROTKB|Q4KG71 [details] [associations]
symbol:fleR "Sigma-54 dependent DNA-binding response
regulator FleR" species:220664 "Pseudomonas protegens Pf-5"
[GO:0007155 "cell adhesion" evidence=ISS] [GO:0030092 "regulation
of flagellum assembly" evidence=ISS] InterPro:IPR001789
InterPro:IPR002078 InterPro:IPR002197 InterPro:IPR003593
InterPro:IPR009057 Pfam:PF00072 Pfam:PF00158 Pfam:PF02954
PRINTS:PR01590 PROSITE:PS50045 PROSITE:PS50110 SMART:SM00382
SMART:SM00448 GO:GO:0005524 GO:GO:0035556 GO:GO:0003677
GO:GO:0007155 GO:GO:0003700 GO:GO:0006351 GO:GO:0005622
Gene3D:1.10.10.60 SUPFAM:SSF46689 EMBL:CP000076
GenomeReviews:CP000076_GR GO:GO:0017111 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG2204
HOGENOM:HOG000058489 InterPro:IPR025662 InterPro:IPR025943
InterPro:IPR025944 PROSITE:PS00675 PROSITE:PS00676 PROSITE:PS00688
GO:GO:0030092 KO:K10943 OMA:FQMIIDT ProtClustDB:CLSK866333
RefSeq:YP_258762.1 ProteinModelPortal:Q4KG71 STRING:Q4KG71
GeneID:3477220 KEGG:pfl:PFL_1636 PATRIC:19872501
BioCyc:PFLU220664:GIX8-1644-MONOMER Uniprot:Q4KG71
Length = 468
Score = 113 (44.8 bits), Expect = 0.00031, P = 0.00031
Identities = 37/140 (26%), Positives = 67/140 (47%)
Query: 30 VHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLII 89
+ VL V+D R+ + L ++ AV S AL+ + + F L++
Sbjct: 3 IKVLLVEDDRALREALADTLLLAGHDYKAVGSAEEALEAVAAEP------FS-----LVV 51
Query: 90 TDYCMPGMTGYELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVKLSD 149
+D MPGM G++LL ++ ++PV++M++ + R + GA D++VKP +
Sbjct: 52 SDVNMPGMDGHQLLGLLRARQP--QLPVLLMTAHGAVERAVEAMRQGAADYLVKPF---E 106
Query: 150 VKRIKDYLTRDVNLGNEGRG 169
+ + D + R LG G G
Sbjct: 107 PRALLDLVARHA-LGGLGVG 125
>TIGR_CMR|BA_5106 [details] [associations]
symbol:BA_5106 "DNA-binding response regulator"
species:198094 "Bacillus anthracis str. Ames" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] InterPro:IPR001789 InterPro:IPR001867
Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110 SMART:SM00448
SMART:SM00862 GO:GO:0006355 GO:GO:0035556 EMBL:AE016879
EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003677
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005622 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034819 HSSP:P08402
RefSeq:NP_847292.1 RefSeq:YP_030989.1 RefSeq:YP_052651.1
ProteinModelPortal:Q81K99 DNASU:1084409
EnsemblBacteria:EBBACT00000012632 EnsemblBacteria:EBBACT00000014721
EnsemblBacteria:EBBACT00000022679 GeneID:1084409 GeneID:2821239
GeneID:2851460 KEGG:ban:BA_5106 KEGG:bar:GBAA_5106 KEGG:bat:BAS4745
OMA:VVINPER ProtClustDB:CLSK873134
BioCyc:BANT260799:GJAJ-4799-MONOMER
BioCyc:BANT261594:GJ7F-4958-MONOMER Uniprot:Q81K99
Length = 232
Score = 108 (43.1 bits), Expect = 0.00033, P = 0.00033
Identities = 30/104 (28%), Positives = 55/104 (52%)
Query: 72 DEEQSINGFDGLKVDLIITDYCMPGMTGYELLKKIKDSSALREIPVVIMSSENILARIDR 131
D E++I+ + +DL++ D MP M GYE+ ++I+ A +P++ +S++ + D+
Sbjct: 35 DGEEAIHIIETQPIDLVVLDIMMPKMDGYEVTRQIR---AKHHMPIIFLSAKT--SDFDK 89
Query: 132 C--LEDGAEDFIVKP-VKLSDVKRIKDYLTRDVNLGNEGRGINK 172
L GA+D++ KP + V R+ L R + L NK
Sbjct: 90 VTGLVLGADDYMTKPFTPIELVARVNAQLRRFLTLNQPKVAENK 133
>UNIPROTKB|Q8ECL4 [details] [associations]
symbol:cheV "Chemotaxis signal transduction system response
regulator CheV" species:211586 "Shewanella oneidensis MR-1"
[GO:0004871 "signal transducer activity" evidence=ISS] [GO:0006935
"chemotaxis" evidence=ISS] InterPro:IPR001789 InterPro:IPR002545
Pfam:PF00072 Pfam:PF01584 PROSITE:PS50110 PROSITE:PS50851
SMART:SM00260 SMART:SM00448 GO:GO:0006355 GO:GO:0035556
GO:GO:0016740 GO:GO:0005622 GO:GO:0006935 GO:GO:0004871
EMBL:AE014299 GenomeReviews:AE014299_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 SUPFAM:SSF50341
HOGENOM:HOG000255027 KO:K03415 InterPro:IPR024181 PIRSF:PIRSF002867
RefSeq:NP_718684.1 ProteinModelPortal:Q8ECL4 DNASU:1170812
GeneID:1170812 KEGG:son:SO_3123 PATRIC:23525892 OMA:TDCQRMV
ProtClustDB:CLSK869841 Uniprot:Q8ECL4
Length = 299
Score = 110 (43.8 bits), Expect = 0.00033, P = 0.00033
Identities = 30/112 (26%), Positives = 56/112 (50%)
Query: 32 VLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITD 91
+L VDDS V RK + L + GR AL + EQ+ + +D++++D
Sbjct: 172 ILLVDDSKVARKQLSDALDSINIPYFVTPDGREALSIM----EQA--AAEHHPIDILVSD 225
Query: 92 YCMPGMTGYELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVK 143
MPG+ GYEL +++D+ L +++ +S + + + + GA + + K
Sbjct: 226 IEMPGLDGYELAFEVRDNPLLANAYIILHTSLSSEISVSQAHQVGANEALTK 277
>TIGR_CMR|SO_3123 [details] [associations]
symbol:SO_3123 "chemotaxis protein CheV" species:211586
"Shewanella oneidensis MR-1" [GO:0004871 "signal transducer
activity" evidence=ISS] [GO:0006935 "chemotaxis" evidence=ISS]
InterPro:IPR001789 InterPro:IPR002545 Pfam:PF00072 Pfam:PF01584
PROSITE:PS50110 PROSITE:PS50851 SMART:SM00260 SMART:SM00448
GO:GO:0006355 GO:GO:0035556 GO:GO:0016740 GO:GO:0005622
GO:GO:0006935 GO:GO:0004871 EMBL:AE014299 GenomeReviews:AE014299_GR
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172 SUPFAM:SSF50341
HOGENOM:HOG000255027 KO:K03415 InterPro:IPR024181 PIRSF:PIRSF002867
RefSeq:NP_718684.1 ProteinModelPortal:Q8ECL4 DNASU:1170812
GeneID:1170812 KEGG:son:SO_3123 PATRIC:23525892 OMA:TDCQRMV
ProtClustDB:CLSK869841 Uniprot:Q8ECL4
Length = 299
Score = 110 (43.8 bits), Expect = 0.00033, P = 0.00033
Identities = 30/112 (26%), Positives = 56/112 (50%)
Query: 32 VLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITD 91
+L VDDS V RK + L + GR AL + EQ+ + +D++++D
Sbjct: 172 ILLVDDSKVARKQLSDALDSINIPYFVTPDGREALSIM----EQA--AAEHHPIDILVSD 225
Query: 92 YCMPGMTGYELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVK 143
MPG+ GYEL +++D+ L +++ +S + + + + GA + + K
Sbjct: 226 IEMPGLDGYELAFEVRDNPLLANAYIILHTSLSSEISVSQAHQVGANEALTK 277
>TAIR|locus:2201552 [details] [associations]
symbol:ETR1 "ETHYLENE RESPONSE 1" species:3702
"Arabidopsis thaliana" [GO:0000155 "phosphorelay sensor kinase
activity" evidence=IEA] [GO:0000156 "phosphorelay response
regulator activity" evidence=IEA;ISS] [GO:0004673 "protein
histidine kinase activity" evidence=IEA;ISS;IMP;TAS] [GO:0004871
"signal transducer activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005789 "endoplasmic reticulum membrane"
evidence=IEA;IDA] [GO:0016020 "membrane" evidence=IEA] [GO:0016772
"transferase activity, transferring phosphorus-containing groups"
evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005783 "endoplasmic reticulum" evidence=IDA] [GO:0010105
"negative regulation of ethylene mediated signaling pathway"
evidence=TAS] [GO:0010182 "sugar mediated signaling pathway"
evidence=TAS] [GO:0009651 "response to salt stress" evidence=IEP]
[GO:0051740 "ethylene binding" evidence=IDA] [GO:0009690 "cytokinin
metabolic process" evidence=IMP] [GO:0009733 "response to auxin
stimulus" evidence=IMP] [GO:0009737 "response to abscisic acid
stimulus" evidence=IMP] [GO:0009739 "response to gibberellin
stimulus" evidence=IMP] [GO:0009408 "response to heat"
evidence=IMP] [GO:0009625 "response to insect" evidence=IMP]
[GO:0006952 "defense response" evidence=TAS] [GO:0010119
"regulation of stomatal movement" evidence=IMP] [GO:0050665
"hydrogen peroxide biosynthetic process" evidence=IMP] [GO:0042802
"identical protein binding" evidence=IPI] [GO:0042742 "defense
response to bacterium" evidence=IMP] [GO:0052544 "defense response
by callose deposition in cell wall" evidence=IMP] [GO:0002237
"response to molecule of bacterial origin" evidence=IMP]
[GO:0071281 "cellular response to iron ion" evidence=IEP]
[GO:0009723 "response to ethylene stimulus" evidence=IMP]
[GO:1900140 "regulation of seedling development" evidence=IMP]
[GO:0007623 "circadian rhythm" evidence=RCA] [GO:0009736 "cytokinin
mediated signaling pathway" evidence=RCA] [GO:0009871 "jasmonic
acid and ethylene-dependent systemic resistance, ethylene mediated
signaling pathway" evidence=TAS] [GO:0009727 "detection of ethylene
stimulus" evidence=IMP] InterPro:IPR003018 InterPro:IPR001789
InterPro:IPR003594 InterPro:IPR003661 InterPro:IPR004358
InterPro:IPR009082 InterPro:IPR014525 Pfam:PF00072 Pfam:PF00512
Pfam:PF01590 Pfam:PF02518 PIRSF:PIRSF026389 PRINTS:PR00344
PROSITE:PS50110 SMART:SM00065 SMART:SM00387 SMART:SM00388
SMART:SM00448 InterPro:IPR005467 GO:GO:0005783 GO:GO:0016021
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005524 GO:GO:0009737
GO:GO:0071281 GO:GO:0009733 GO:GO:0009873 GO:GO:0010119
GO:GO:0006355 GO:GO:0005789 GO:GO:0035556 GO:GO:0046872
GO:GO:0009651 GO:GO:0042742 GO:GO:0052544 GO:GO:0009408
GO:GO:0010182 GO:GO:0009739 GO:GO:0009727 GO:GO:0023014
eggNOG:COG2202 GO:GO:0002237 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 GO:GO:0000155 Gene3D:1.10.287.130
Gene3D:3.30.565.10 SUPFAM:SSF55874 SUPFAM:SSF47384 PROSITE:PS50109
GO:GO:0004673 GO:GO:0010105 BRENDA:2.7.13.3 EMBL:AC020665
GO:GO:1900140 GO:GO:0009690 GO:GO:0009625 GO:GO:0050665
HOGENOM:HOG000240343 KO:K14509 GO:GO:0051740 EMBL:L24119
IPI:IPI00538410 PIR:A48246 RefSeq:NP_176808.3 UniGene:At.43238
PDB:1DCF PDBsum:1DCF ProteinModelPortal:P49333 SMR:P49333
IntAct:P49333 STRING:P49333 PaxDb:P49333 PRIDE:P49333
EnsemblPlants:AT1G66340.1 GeneID:842951 KEGG:ath:AT1G66340
TAIR:At1g66340 InParanoid:P49333 OMA:NIWIESD PhylomeDB:P49333
ProtClustDB:CLSN2680572 EvolutionaryTrace:P49333
Genevestigator:P49333 GermOnline:AT1G66340 Uniprot:P49333
Length = 738
Score = 115 (45.5 bits), Expect = 0.00034, P = 0.00034
Identities = 31/125 (24%), Positives = 62/125 (49%)
Query: 32 VLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITD 91
VL +D++ V R V + LL C+VT V S L+ + + + ++ D
Sbjct: 612 VLVMDENGVSRMVTKGLLVHLGCEVTTVSSNEECLRVVSHEHK------------VVFMD 659
Query: 92 YCMPGMTGYELLKKI--KDSSALREIPVVIMSSENI-LARIDRCLEDGAEDFIVKPVKLS 148
CMPG+ Y++ +I K + + P+++ S N + ++C+ G + ++KPV L
Sbjct: 660 VCMPGVENYQIALRIHEKFTKQRHQRPLLVALSGNTDKSTKEKCMSFGLDGVLLKPVSLD 719
Query: 149 DVKRI 153
+++ +
Sbjct: 720 NIRDV 724
>TIGR_CMR|BA_5715 [details] [associations]
symbol:BA_5715 "DNA-binding response regulator YycF"
species:198094 "Bacillus anthracis str. Ames" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] InterPro:IPR001789 InterPro:IPR001867
Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110 SMART:SM00448
SMART:SM00862 GO:GO:0006355 GO:GO:0035556 EMBL:AE016879
EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0003677
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005622 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034819 HSSP:P08402
RefSeq:NP_847861.1 RefSeq:YP_022401.1 RefSeq:YP_031556.1
ProteinModelPortal:Q81JJ0 SMR:Q81JJ0 IntAct:Q81JJ0 DNASU:1085472
EnsemblBacteria:EBBACT00000008903 EnsemblBacteria:EBBACT00000016684
EnsemblBacteria:EBBACT00000023802 GeneID:1085472 GeneID:2816053
GeneID:2852841 KEGG:ban:BA_5715 KEGG:bar:GBAA_5715 KEGG:bat:BAS5319
KO:K07668 OMA:KEQESND ProtClustDB:CLSK2391406
BioCyc:BANT260799:GJAJ-5392-MONOMER
BioCyc:BANT261594:GJ7F-5568-MONOMER Uniprot:Q81JJ0
Length = 235
Score = 108 (43.1 bits), Expect = 0.00034, P = 0.00034
Identities = 26/91 (28%), Positives = 55/91 (60%)
Query: 72 DEEQSINGFDGLKVDLIITDYCMPGMTGYELLKKIKDSSALREIPVVIMSSENILARIDR 131
D +++I + D+++ D +PG G E+ ++I+ SS E+P++++++++ + ID+
Sbjct: 35 DGDEAIEKATEEQPDMVLLDIMLPGKDGLEVCREIRKSS---EMPIIMLTAKD--SEIDK 89
Query: 132 CL--EDGAEDFIVKPVKLSDV-KRIKDYLTR 159
L E GA+D++ KP ++ R+K L R
Sbjct: 90 VLGLELGADDYVTKPFSTRELLARVKANLRR 120
>TIGR_CMR|CPS_3065 [details] [associations]
symbol:CPS_3065 "DNA-binding response regulator"
species:167879 "Colwellia psychrerythraea 34H" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] InterPro:IPR001789 InterPro:IPR001867
Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110 SMART:SM00448
SMART:SM00862 GO:GO:0006355 GO:GO:0035556 GO:GO:0003677
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005622 EMBL:CP000083
GenomeReviews:CP000083_GR GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 eggNOG:COG0745 HOGENOM:HOG000034819
RefSeq:YP_269763.1 ProteinModelPortal:Q47ZK7 STRING:Q47ZK7
GeneID:3520016 KEGG:cps:CPS_3065 PATRIC:21469133
ProtClustDB:CLSK938167 BioCyc:CPSY167879:GI48-3114-MONOMER
Uniprot:Q47ZK7
Length = 237
Score = 108 (43.1 bits), Expect = 0.00035, P = 0.00035
Identities = 34/140 (24%), Positives = 69/140 (49%)
Query: 28 EEVHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDL 87
E++H+L ++D ++ E L + + T + G A+ + L DL
Sbjct: 11 EKMHILIIEDDKEIARLTEIYLQSTGYETTIIADGSLAIAMI-----------KKLSPDL 59
Query: 88 IITDYCMPGMTGYELLKKIKDSSALREIPVVIMSS-ENILARIDRCLEDGAEDFIVKPVK 146
I+ D +PG+ G+EL K+ ++ P++++++ E+ L+ + L+ GA+D++ KP K
Sbjct: 60 ILLDLMLPGVDGFELCKQARE---FYNGPIIVLTAMEDDLSEVS-LLKLGADDYLRKPAK 115
Query: 147 LSDVKRIKDYLTRDVNLGNE 166
+ + L R + NE
Sbjct: 116 PHIMSARIEALLRRAKVNNE 135
>TIGR_CMR|SO_3988 [details] [associations]
symbol:SO_3988 "aerobic respiration control protein ArcA"
species:211586 "Shewanella oneidensis MR-1" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0009061 "anaerobic respiration" evidence=ISS]
InterPro:IPR001789 InterPro:IPR001867 InterPro:IPR016032
Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110 SMART:SM00448
SMART:SM00862 GO:GO:0006355 GO:GO:0035556 GO:GO:0003677
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0006351 GO:GO:0005622
EMBL:AE014299 GenomeReviews:AE014299_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034819 KO:K07773
OMA:QRTMQEN ProtClustDB:PRK11173 SUPFAM:SSF46894 HSSP:P08402
RefSeq:NP_719518.1 ProteinModelPortal:Q8EAB9 SMR:Q8EAB9
GeneID:1171620 KEGG:son:SO_3988 PATRIC:23527652 Uniprot:Q8EAB9
Length = 238
Score = 108 (43.1 bits), Expect = 0.00035, P = 0.00035
Identities = 35/139 (25%), Positives = 66/139 (47%)
Query: 31 HVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIIT 90
H+L V+D V R + + VT + G A + E K++L++
Sbjct: 5 HILIVEDEAVTRNTLRSIFEAEGYVVTEANDG--AEMHKAMQEN---------KINLVVM 53
Query: 91 DYCMPGMTGYELLKKIKDSSALREIPVVIMSSENILARIDRCL--EDGAEDFIVKPVKLS 148
D +PG G L +++++ + I ++ ++ + +D+ L E GA+D+I KP
Sbjct: 54 DINLPGKNGLLLARELRE---INNIGLIFLTGRD--NEVDKILGLEIGADDYITKPFNPR 108
Query: 149 DVK-RIKDYLTRDVNLGNE 166
++ R ++ LTR + GNE
Sbjct: 109 ELTIRARNLLTRVNSAGNE 127
>TIGR_CMR|SPO_A0357 [details] [associations]
symbol:SPO_A0357 "DNA-binding response regulator"
species:246200 "Ruegeria pomeroyi DSS-3" [GO:0000156 "phosphorelay
response regulator activity" evidence=ISS] [GO:0000160
"phosphorelay signal transduction system" evidence=ISS]
InterPro:IPR001789 InterPro:IPR001867 InterPro:IPR016032
Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110 SMART:SM00448
SMART:SM00862 GO:GO:0006355 GO:GO:0035556 GO:GO:0003677
Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0006351 GO:GO:0005622
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
HOGENOM:HOG000034819 SUPFAM:SSF46894 EMBL:CP000032
GenomeReviews:CP000032_GR KO:K02483 RefSeq:YP_165184.1
ProteinModelPortal:Q5LKM4 GeneID:3196715 KEGG:sil:SPOA0357
PATRIC:23382060 OMA:ERARMVL ProtClustDB:CLSK935236 Uniprot:Q5LKM4
Length = 242
Score = 108 (43.1 bits), Expect = 0.00037, P = 0.00037
Identities = 36/132 (27%), Positives = 60/132 (45%)
Query: 31 HVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIIT 90
H+L VDD R + R L S + T R L + +DL++
Sbjct: 7 HILVVDDHSEIRTAVCRYLEKSGLRTTMAKDAREMDAVLATEN-----------IDLVVL 55
Query: 91 DYCMPGMTGYELLKKIKDSSALREIPVVIMSSENILARIDRC--LEDGAEDFIVKPVKLS 148
D MPG G K++ S +IP++++++ + +DR LE GA+D++ KP
Sbjct: 56 DVMMPGEDGLSACKRLSQSG---DIPILLLTA--LSEDMDRIVGLETGADDYLAKPFNPR 110
Query: 149 DV-KRIKDYLTR 159
++ RI+ L R
Sbjct: 111 ELLARIRAILRR 122
>UNIPROTKB|P14375 [details] [associations]
symbol:zraR species:83333 "Escherichia coli K-12"
[GO:0003677 "DNA binding" evidence=IEA;IDA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA;IGI;IEP;ISS]
[GO:0017111 "nucleoside-triphosphatase activity" evidence=IEA]
[GO:0008134 "transcription factor binding" evidence=IEA]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0035556 "intracellular signal
transduction" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0000160 "phosphorelay signal
transduction system" evidence=IEA;IDA] [GO:0000156 "phosphorelay
response regulator activity" evidence=IEA;IDA] InterPro:IPR001789
InterPro:IPR002078 InterPro:IPR002197 InterPro:IPR003593
InterPro:IPR009057 Pfam:PF00072 Pfam:PF00158 Pfam:PF02954
PRINTS:PR01590 PROSITE:PS50045 PROSITE:PS50110 SMART:SM00382
SMART:SM00448 GO:GO:0005524 GO:GO:0005737 GO:GO:0035556 EMBL:U00096
EMBL:AP009048 GenomeReviews:AP009048_GR GenomeReviews:U00096_GR
GO:GO:0003677 GO:GO:0003700 GO:GO:0006351 Gene3D:1.10.10.60
SUPFAM:SSF46689 EMBL:U00006 GO:GO:0017111 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG2204
InterPro:IPR025662 InterPro:IPR025943 InterPro:IPR025944
PROSITE:PS00675 PROSITE:PS00676 PROSITE:PS00688
HOGENOM:HOG000058487 EMBL:M28369 PIR:G65207 RefSeq:NP_418432.1
RefSeq:YP_491456.1 ProteinModelPortal:P14375 SMR:P14375
DIP:DIP-9980N PRIDE:P14375 EnsemblBacteria:EBESCT00000003356
EnsemblBacteria:EBESCT00000015912 GeneID:12933469 GeneID:948505
KEGG:ecj:Y75_p3192 KEGG:eco:b4004 PATRIC:32123533 EchoBASE:EB0477
EcoGene:EG10482 KO:K07713 OMA:AEVNAGH ProtClustDB:PRK10365
BioCyc:EcoCyc:HYDG-MONOMER BioCyc:ECOL316407:JW3968-MONOMER
Genevestigator:P14375 Uniprot:P14375
Length = 441
Score = 112 (44.5 bits), Expect = 0.00038, P = 0.00038
Identities = 37/125 (29%), Positives = 63/125 (50%)
Query: 28 EEVHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDL 87
+ + +L VDD +++ LL V +SGR+AL+ + EQ DL
Sbjct: 4 DNIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQV---REQVF--------DL 52
Query: 88 IITDYCMPGMTGYELLKKIKDSSALRE-IPVVIMSSENILARIDRCLEDGAEDFIVKPVK 146
++ D M M G LK+IK AL IPV+IM++ + + L+ GA D+++KP+
Sbjct: 53 VLCDVRMAEMDGIATLKEIK---ALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLD 109
Query: 147 LSDVK 151
+++
Sbjct: 110 FDNLQ 114
>UNIPROTKB|Q9KT84 [details] [associations]
symbol:luxO "Regulatory protein LuxO" species:243277
"Vibrio cholerae O1 biovar El Tor str. N16961" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] [GO:0035556 "intracellular signal
transduction" evidence=ISS] InterPro:IPR001789 InterPro:IPR002078
InterPro:IPR002197 InterPro:IPR003593 InterPro:IPR009057
Pfam:PF00072 Pfam:PF00158 Pfam:PF02954 PROSITE:PS50045
PROSITE:PS50110 SMART:SM00382 SMART:SM00448 GO:GO:0005524
GO:GO:0003677 EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0003700
GO:GO:0006351 GO:GO:0005622 Gene3D:1.10.10.60 SUPFAM:SSF46689
GO:GO:0017111 GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
eggNOG:COG2204 InterPro:IPR025943 InterPro:IPR025944
PROSITE:PS00675 PROSITE:PS00676 PROSITE:PS00688 PIR:C82250
RefSeq:NP_230666.1 ProteinModelPortal:Q9KT84 DNASU:2614291
GeneID:2614291 KEGG:vch:VC1021 PATRIC:20081144 KO:K10912
OMA:HEEGREF ProtClustDB:CLSK874182 Uniprot:Q9KT84
Length = 455
Score = 112 (44.5 bits), Expect = 0.00040, P = 0.00040
Identities = 32/119 (26%), Positives = 59/119 (49%)
Query: 35 VDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCM 94
V+D+ + LT + V +GR A++ +G E DLI+ D +
Sbjct: 2 VEDTASVAALYRSYLTPLDIDINIVGTGRDAIESIGRREP-----------DLILLDLRL 50
Query: 95 PGMTGYELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVKLSDVKRI 153
P MTG ++L +K+ S ++P+V M++ + + GA+DF++KP + +D R+
Sbjct: 51 PDMTGMDVLYAVKEKSP--DVPIVFMTAHGSIDTAVEAMRHGAQDFLIKPCE-ADRLRV 106
>TIGR_CMR|GSU_0372 [details] [associations]
symbol:GSU_0372 "sigma-54 dependent DNA-binding response
regulator" species:243231 "Geobacter sulfurreducens PCA"
[GO:0000156 "phosphorelay response regulator activity"
evidence=ISS] [GO:0000160 "phosphorelay signal transduction system"
evidence=ISS] InterPro:IPR001789 InterPro:IPR002078
InterPro:IPR002197 InterPro:IPR003593 InterPro:IPR009057
Pfam:PF00072 Pfam:PF00158 Pfam:PF02954 PRINTS:PR01590
PROSITE:PS50045 PROSITE:PS50110 SMART:SM00382 SMART:SM00448
GO:GO:0005524 GO:GO:0035556 GO:GO:0003677 GO:GO:0003700
GO:GO:0006351 GO:GO:0005622 Gene3D:1.10.10.60 SUPFAM:SSF46689
EMBL:AE017180 GenomeReviews:AE017180_GR GO:GO:0017111 GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000058489
InterPro:IPR025662 InterPro:IPR025943 PROSITE:PS00675
PROSITE:PS00676 HSSP:P10957 RefSeq:NP_951431.2 GeneID:2686674
KEGG:gsu:GSU0372 PATRIC:22023488 ProtClustDB:CLSK827784
BioCyc:GSUL243231:GH27-388-MONOMER Uniprot:Q74G75
Length = 455
Score = 112 (44.5 bits), Expect = 0.00040, P = 0.00040
Identities = 36/142 (25%), Positives = 69/142 (48%)
Query: 32 VLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITD 91
+L VDD R++++ +L + T G+ AL L DE + D+I+TD
Sbjct: 5 ILIVDDERGQREILQTILEGERYETTTAAGGQEALALL--DERE---------FDVILTD 53
Query: 92 YCMPGMTGYELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVKLSDVK 151
M GM+G ELL+++ +A + +++M++ + ++ GA D++ KP++ +
Sbjct: 54 LKMQGMSGMELLERLL--AADPQQCIIMMTAHGTVDSAVEAMKKGAFDYLEKPLERDTLL 111
Query: 152 RIKDYLTRDVNLGNEGRGINKR 173
V L E R ++K+
Sbjct: 112 LTLRRAVERVRLLKENRALHKK 133
>TIGR_CMR|VC_1021 [details] [associations]
symbol:VC_1021 "LuxO repressor protein" species:686 "Vibrio
cholerae O1 biovar El Tor" [GO:0000156 "phosphorelay response
regulator activity" evidence=ISS] [GO:0000160 "phosphorelay signal
transduction system" evidence=ISS] [GO:0003700 "sequence-specific
DNA binding transcription factor activity" evidence=ISS]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=ISS] InterPro:IPR001789 InterPro:IPR002078
InterPro:IPR002197 InterPro:IPR003593 InterPro:IPR009057
Pfam:PF00072 Pfam:PF00158 Pfam:PF02954 PROSITE:PS50045
PROSITE:PS50110 SMART:SM00382 SMART:SM00448 GO:GO:0005524
GO:GO:0003677 EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0003700
GO:GO:0006351 GO:GO:0005622 Gene3D:1.10.10.60 SUPFAM:SSF46689
GO:GO:0017111 GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
eggNOG:COG2204 InterPro:IPR025943 InterPro:IPR025944
PROSITE:PS00675 PROSITE:PS00676 PROSITE:PS00688 PIR:C82250
RefSeq:NP_230666.1 ProteinModelPortal:Q9KT84 DNASU:2614291
GeneID:2614291 KEGG:vch:VC1021 PATRIC:20081144 KO:K10912
OMA:HEEGREF ProtClustDB:CLSK874182 Uniprot:Q9KT84
Length = 455
Score = 112 (44.5 bits), Expect = 0.00040, P = 0.00040
Identities = 32/119 (26%), Positives = 59/119 (49%)
Query: 35 VDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCM 94
V+D+ + LT + V +GR A++ +G E DLI+ D +
Sbjct: 2 VEDTASVAALYRSYLTPLDIDINIVGTGRDAIESIGRREP-----------DLILLDLRL 50
Query: 95 PGMTGYELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVKLSDVKRI 153
P MTG ++L +K+ S ++P+V M++ + + GA+DF++KP + +D R+
Sbjct: 51 PDMTGMDVLYAVKEKSP--DVPIVFMTAHGSIDTAVEAMRHGAQDFLIKPCE-ADRLRV 106
>TIGR_CMR|BA_1955 [details] [associations]
symbol:BA_1955 "DNA-binding response regulator"
species:198094 "Bacillus anthracis str. Ames" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0003700 "sequence-specific DNA binding transcription factor
activity" evidence=ISS] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=ISS] InterPro:IPR001789 InterPro:IPR001867
Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110 SMART:SM00448
SMART:SM00862 GO:GO:0006355 GO:GO:0035556 EMBL:AE016879
EMBL:AE017334 GenomeReviews:AE016879_GR GenomeReviews:AE017334_GR
GO:GO:0003677 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005622
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
HOGENOM:HOG000034819 HSSP:P08402 RefSeq:NP_844363.1
RefSeq:YP_018600.2 ProteinModelPortal:Q81RT3 DNASU:1085997
EnsemblBacteria:EBBACT00000011147 EnsemblBacteria:EBBACT00000016377
GeneID:1085997 GeneID:2817674 KEGG:ban:BA_1955 KEGG:bar:GBAA_1955
PATRIC:18781506 OMA:FLECEGF ProtClustDB:CLSK916430
BioCyc:BANT261594:GJ7F-1959-MONOMER Uniprot:Q81RT3
Length = 228
Score = 107 (42.7 bits), Expect = 0.00042, P = 0.00042
Identities = 28/91 (30%), Positives = 52/91 (57%)
Query: 70 GLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKKIKDSSALREIPVVIMSSENILARI 129
GLD Q IN +KVD++I D MP M G+++ +++ +IP++I++++ ++
Sbjct: 38 GLDALQKINQ---VKVDMVILDIMMPNMDGFDVCFELRK---YYDIPILILTAKGETSQK 91
Query: 130 DRCLEDGAEDFIVKPVK-LSDVKRIKDYLTR 159
+ G +D++VKP + V R+K L R
Sbjct: 92 VKGFHLGTDDYLVKPFDPIELVVRVKALLKR 122
>TIGR_CMR|SO_4477 [details] [associations]
symbol:SO_4477 "transcriptional regulatory protein CpxR"
species:211586 "Shewanella oneidensis MR-1" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
InterPro:IPR001789 InterPro:IPR001867 Pfam:PF00072 Pfam:PF00486
PROSITE:PS50110 SMART:SM00448 SMART:SM00862 GO:GO:0006355
GO:GO:0035556 GO:GO:0003677 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0005622 EMBL:AE014299 GenomeReviews:AE014299_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 HOGENOM:HOG000034819 KO:K07662
HSSP:P08402 RefSeq:NP_719998.1 ProteinModelPortal:Q8E918
GeneID:1172072 KEGG:son:SO_4477 PATRIC:23528605 OMA:TTQEIHA
ProtClustDB:CLSK907666 Uniprot:Q8E918
Length = 228
Score = 107 (42.7 bits), Expect = 0.00042, P = 0.00042
Identities = 40/153 (26%), Positives = 76/153 (49%)
Query: 32 VLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITD 91
+L +DD +++ +LL + K+T G++ L+ L L + DLI+ D
Sbjct: 4 ILLIDDDLGLSELLGQLLELEGFKLTLAYDGKQGLE-LALATDY----------DLILLD 52
Query: 92 YCMPGMTGYELLKKIKDSSALREIPVVIMSSENILARIDRC--LEDGAEDFIVKPVKLSD 149
+P + G+E+L+ ++ ++ PV+++++ IDR LE GA+D++ KP +
Sbjct: 53 VMLPKLNGFEVLRALRQH---KQTPVLMLTARG--DEIDRVVGLEIGADDYLPKPFNDRE 107
Query: 150 -VKRIKDYLTRDVNLGNEGRGINKRKARESCDL 181
+ RI+ + R E I+ A+E DL
Sbjct: 108 LIARIRAIIRRSHLTAQE---IHATPAQEFGDL 137
>UNIPROTKB|P38684 [details] [associations]
symbol:torR "TorR" species:83333 "Escherichia coli K-12"
[GO:0035556 "intracellular signal transduction" evidence=IEA;IDA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA;IDA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0000160 "phosphorelay signal transduction system" evidence=IEA]
[GO:0000156 "phosphorelay response regulator activity"
evidence=IEA;IDA] [GO:0005737 "cytoplasm" evidence=IEA]
InterPro:IPR001789 InterPro:IPR001867 Pfam:PF00072 Pfam:PF00486
PROSITE:PS50110 SMART:SM00448 SMART:SM00862 GO:GO:0005737
GO:GO:0006355 EMBL:U00096 EMBL:AP009048 GenomeReviews:AP009048_GR
GenomeReviews:U00096_GR GO:GO:0003677 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0006351 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 eggNOG:COG0745 HOGENOM:HOG000034819 EMBL:X94231
PIR:A64841 RefSeq:NP_415515.1 RefSeq:YP_489268.1 PDB:1ZGZ
PDBsum:1ZGZ ProteinModelPortal:P38684 SMR:P38684 DIP:DIP-11016N
IntAct:P38684 MINT:MINT-1283676 EnsemblBacteria:EBESCT00000004476
EnsemblBacteria:EBESCT00000016620 GeneID:12932494 GeneID:946182
KEGG:ecj:Y75_p0968 KEGG:eco:b0995 PATRIC:32117215 EchoBASE:EB2499
EcoGene:EG12615 KO:K07772 OMA:YCYRFAG ProtClustDB:PRK10766
BioCyc:EcoCyc:TORR-MONOMER BioCyc:ECOL316407:JW0980-MONOMER
EvolutionaryTrace:P38684 Genevestigator:P38684 Uniprot:P38684
Length = 230
Score = 107 (42.7 bits), Expect = 0.00043, P = 0.00043
Identities = 37/141 (26%), Positives = 72/141 (51%)
Query: 31 HVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIIT 90
H++ V+D V + ++ T V+ SG + + + QS VDLI+
Sbjct: 4 HIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIM---QNQS--------VDLILL 52
Query: 91 DYCMPGMTGYELLKKIKDSSALREIPVVIMSSENILARIDRC--LEDGAEDFIVKPVKLS 148
D +P G L + +++ S + +++++ + RIDR LE GA+D++ KP++L
Sbjct: 53 DINLPDENGLMLTRALRERST---VGIILVTGRS--DRIDRIVGLEMGADDYVTKPLELR 107
Query: 149 D-VKRIKDYLTRDVNLGNEGR 168
+ V R+K+ L R ++L + +
Sbjct: 108 ELVVRVKNLLWR-IDLARQAQ 127
>UNIPROTKB|Q9AE24 [details] [associations]
symbol:rprY "Transcriptional regulatory protein RprY"
species:295405 "Bacteroides fragilis YCH46" [GO:0000160
"phosphorelay signal transduction system" evidence=NAS] [GO:0003677
"DNA binding" evidence=NAS] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=NAS] InterPro:IPR001789
InterPro:IPR001867 Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110
SMART:SM00448 SMART:SM00862 GO:GO:0005737 GO:GO:0006355
GO:GO:0035556 GO:GO:0003677 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0006351 GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172
GO:GO:0000160 eggNOG:COG0745 EMBL:S59000 EMBL:AP006841
GenomeReviews:AP006841_GR PIR:S33662 RefSeq:YP_101140.1
ProteinModelPortal:Q9AE24 GeneID:3084945 KEGG:bfr:BF3864
PATRIC:21053264 OMA:CVLDVMM ProtClustDB:CLSK823045 Uniprot:Q9AE24
Length = 236
Score = 107 (42.7 bits), Expect = 0.00046, P = 0.00046
Identities = 26/89 (29%), Positives = 48/89 (53%)
Query: 72 DEEQSINGFDGLKVDLIITDYCMPGMTGYELLKKIKDSSALREIPVVIMSSENILARIDR 131
D E F K DL + D MP G+ L ++++ ++A EIP++ ++++ + I
Sbjct: 39 DGEAGFKAFLKNKYDLCVFDVMMPKKDGFTLAQEVRAANA--EIPIIFLTAKTLKEDILE 96
Query: 132 CLEDGAEDFIVKPVKLSDVK-RIKDYLTR 159
+ GA+D+I KP + ++ RI+ L R
Sbjct: 97 GFKIGADDYITKPFSMEELTFRIEAILRR 125
>UNIPROTKB|P0A9Q1 [details] [associations]
symbol:arcA "ArcA-Phosphorylated DNA-binding
transcriptional dual regulator" species:83333 "Escherichia coli
K-12" [GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IDA] [GO:0000160 "phosphorelay signal transduction system"
evidence=IEA;IDA] [GO:0000156 "phosphorelay response regulator
activity" evidence=IEA;IDA] [GO:0005622 "intracellular"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0035556
"intracellular signal transduction" evidence=IEA;IDA] [GO:0003700
"sequence-specific DNA binding transcription factor activity"
evidence=ISS;IDA] [GO:0045892 "negative regulation of
transcription, DNA-dependent" evidence=ISS;IDA] [GO:0045893
"positive regulation of transcription, DNA-dependent"
evidence=ISS;IDA] [GO:0005737 "cytoplasm" evidence=IEA]
InterPro:IPR001789 InterPro:IPR001867 InterPro:IPR016032
Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110 SMART:SM00448
SMART:SM00862 GO:GO:0005737 GO:GO:0045892 GO:GO:0045893 EMBL:U00096
EMBL:AP009048 GenomeReviews:AP009048_GR GenomeReviews:U00096_GR
GO:GO:0003677 GO:GO:0003700 Gene3D:1.10.10.10 InterPro:IPR011991
GO:GO:0006351 EMBL:U14003 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 eggNOG:COG0745 EMBL:M10044 EMBL:L34010 PIR:A03561
RefSeq:NP_418818.1 RefSeq:YP_492531.1 PDB:1XHE PDB:1XHF PDBsum:1XHE
PDBsum:1XHF ProteinModelPortal:P0A9Q1 SMR:P0A9Q1 DIP:DIP-36035N
IntAct:P0A9Q1 SWISS-2DPAGE:P0A9Q1 PaxDb:P0A9Q1 PRIDE:P0A9Q1
EnsemblBacteria:EBESCT00000004157 EnsemblBacteria:EBESCT00000015585
GeneID:12930392 GeneID:948874 KEGG:ecj:Y75_p4285 KEGG:eco:b4401
PATRIC:32124420 EchoBASE:EB0059 EcoGene:EG10061
HOGENOM:HOG000034819 KO:K07773 OMA:QRTMQEN ProtClustDB:PRK11173
BioCyc:EcoCyc:ARCA-MONOMER BioCyc:ECOL316407:JW4364-MONOMER
EvolutionaryTrace:P0A9Q1 Genevestigator:P0A9Q1 SUPFAM:SSF46894
Uniprot:P0A9Q1
Length = 238
Score = 107 (42.7 bits), Expect = 0.00047, P = 0.00047
Identities = 38/150 (25%), Positives = 68/150 (45%)
Query: 31 HVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIIT 90
H+L V+D V R ++ + V G Q L E IN L+I
Sbjct: 5 HILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILS---EYDIN--------LVIM 53
Query: 91 DYCMPGMTGYELLKKIKDSSALREIPVVIMSSENILARIDRCL--EDGAEDFIVKPVKLS 148
D +PG G L +++++ + + ++ ++ + +D+ L E GA+D+I KP
Sbjct: 54 DINLPGKNGLLLARELREQA---NVALMFLTGRD--NEVDKILGLEIGADDYITKPFNPR 108
Query: 149 DVK-RIKDYLTRDVNLGN---EGRGINKRK 174
++ R ++ L+R +NLG E R + K
Sbjct: 109 ELTIRARNLLSRTMNLGTVSEERRSVESYK 138
>UNIPROTKB|P0AA16 [details] [associations]
symbol:ompR species:83333 "Escherichia coli K-12"
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=IDA] [GO:0000160 "phosphorelay signal transduction system"
evidence=IEA;IDA] [GO:0000156 "phosphorelay response regulator
activity" evidence=IEA;IDA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0035556
"intracellular signal transduction" evidence=IEA;IDA] [GO:0003677
"DNA binding" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
InterPro:IPR001789 InterPro:IPR001867 Pfam:PF00072 Pfam:PF00486
PROSITE:PS50110 SMART:SM00448 SMART:SM00862 GO:GO:0005737
GO:GO:0045893 EMBL:U00096 EMBL:AP009048 GenomeReviews:AP009048_GR
GenomeReviews:U00096_GR GO:GO:0003677 EMBL:U18997 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0006351 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 eggNOG:COG0745 HOGENOM:HOG000034819 EMBL:J01656
PIR:H65135 RefSeq:NP_417864.1 RefSeq:YP_492027.1 PDB:1ODD PDB:1OPC
PDB:2JPB PDBsum:1ODD PDBsum:1OPC PDBsum:2JPB
ProteinModelPortal:P0AA16 SMR:P0AA16 DIP:DIP-31859N IntAct:P0AA16
PaxDb:P0AA16 PRIDE:P0AA16 EnsemblBacteria:EBESCT00000000052
EnsemblBacteria:EBESCT00000000053 EnsemblBacteria:EBESCT00000000054
EnsemblBacteria:EBESCT00000000055 EnsemblBacteria:EBESCT00000017093
GeneID:12932273 GeneID:947913 KEGG:ecj:Y75_p3771 KEGG:eco:b3405
PATRIC:32122246 EchoBASE:EB0666 EcoGene:EG10672 KO:K07659
OMA:REPMSRD ProtClustDB:PRK09468 BioCyc:EcoCyc:OMPR-MONOMER
BioCyc:ECOL316407:JW3368-MONOMER EvolutionaryTrace:P0AA16
Genevestigator:P0AA16 Uniprot:P0AA16
Length = 239
Score = 107 (42.7 bits), Expect = 0.00047, P = 0.00047
Identities = 36/138 (26%), Positives = 68/138 (49%)
Query: 28 EEVHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDL 87
E +L VDD R ++ER LT +V +V + + + L +S + L
Sbjct: 3 ENYKILVVDDDMRLRALLERYLTEQGFQVRSVANAEQMDRLL---TRESFH--------L 51
Query: 88 IITDYCMPGMTGYELLKKIKDSSALREIPVVIMSSENILARIDRC--LEDGAEDFIVKPV 145
++ D +PG G + ++++ S +P+++++++ +DR LE GA+D+I KP
Sbjct: 52 MVLDLMLPGEDGLSICRRLRSQS--NPMPIIMVTAKG--EEVDRIVGLEIGADDYIPKPF 107
Query: 146 KLSDV-KRIKDYLTRDVN 162
++ RI+ L R N
Sbjct: 108 NPRELLARIRAVLRRQAN 125
>DICTYBASE|DDB_G0268012 [details] [associations]
symbol:DDB_G0268012 "response regulator receiver
domain-containing protein" species:44689 "Dictyostelium discoideum"
[GO:0035556 "intracellular signal transduction" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0000160 "phosphorelay signal transduction system"
evidence=IEA] [GO:0000156 "phosphorelay response regulator
activity" evidence=IEA] [GO:0005575 "cellular_component"
evidence=ND] InterPro:IPR001789 Pfam:PF00072 PROSITE:PS50110
SMART:SM00448 dictyBase:DDB_G0268012 GO:GO:0006355 GO:GO:0035556
EMBL:AAFI02000003 GO:GO:0005622 GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 eggNOG:COG0784 RefSeq:XP_647491.1
ProteinModelPortal:Q55FP2 EnsemblProtists:DDB0233892 GeneID:8616298
KEGG:ddi:DDB_G0268012 InParanoid:Q55FP2 OMA:DDHLFKP Uniprot:Q55FP2
Length = 382
Score = 110 (43.8 bits), Expect = 0.00052, P = 0.00052
Identities = 35/130 (26%), Positives = 66/130 (50%)
Query: 31 HVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIIT 90
++L V+D ++R + + L K+T ++G Q++N + K D+I+
Sbjct: 9 NILVVEDDPLNRIIASKFLKKLGHKITLAENGL-----------QAVNAVENNKYDIILM 57
Query: 91 DYCMPGMTGYELLKKIKD-SSALR-EIPVVIMSSENILARIDRCLEDGAEDFIVKPVKLS 148
D MP M G E K I++ +LR + P++ +++ + R C+E G +D + KP K
Sbjct: 58 DVNMPIMGGKEATKIIREMQQSLRIKTPIIGLTT---VER-QECIEAGMDDHLFKPCKFQ 113
Query: 149 DV-KRIKDYL 157
+ +I+ YL
Sbjct: 114 QLDSKIEQYL 123
>TIGR_CMR|DET_1540 [details] [associations]
symbol:DET_1540 "DNA-binding response regulator"
species:243164 "Dehalococcoides ethenogenes 195" [GO:0000156
"phosphorelay response regulator activity" evidence=ISS]
[GO:0000160 "phosphorelay signal transduction system" evidence=ISS]
[GO:0003677 "DNA binding" evidence=ISS] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=ISS] InterPro:IPR001789
InterPro:IPR001867 Pfam:PF00072 Pfam:PF00486 PROSITE:PS50110
SMART:SM00448 SMART:SM00862 GO:GO:0006355 GO:GO:0035556
GO:GO:0003677 Gene3D:1.10.10.10 InterPro:IPR011991 GO:GO:0005622
EMBL:CP000027 GenomeReviews:CP000027_GR GO:GO:0000156
InterPro:IPR011006 SUPFAM:SSF52172 eggNOG:COG0745
HOGENOM:HOG000034815 RefSeq:YP_182238.1 ProteinModelPortal:Q3Z6B1
GeneID:3229185 KEGG:det:DET1540 PATRIC:21610100 OMA:ARIRCIL
ProtClustDB:CLSK741608 BioCyc:DETH243164:GJNF-1541-MONOMER
Uniprot:Q3Z6B1
Length = 225
Score = 106 (42.4 bits), Expect = 0.00055, P = 0.00055
Identities = 37/136 (27%), Positives = 65/136 (47%)
Query: 32 VLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITD 91
+L ++D + + I L I VT + S R L + EEQ N L+I D
Sbjct: 3 ILIIEDDYKIVQAISFALKIGWPDVTLL-SASRGESGLRMIEEQRPN--------LVILD 53
Query: 92 YCMPGMTGYELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVKLSDV- 150
+P M G E+LK D+ + P++I++ + + + LE GA ++I+KP + ++
Sbjct: 54 LSLPDMDGLEVLK---DARLFCDTPIIILTVRSEESDVVEALELGANEYIIKPFRQMELL 110
Query: 151 KRIKDYLTRDVNLGNE 166
RI+ L R + +
Sbjct: 111 ARIRCILRRPITTSKD 126
>TIGR_CMR|SO_1228 [details] [associations]
symbol:SO_1228 "torcad operon transcriptional regulatory
protein TorR" species:211586 "Shewanella oneidensis MR-1"
[GO:0000156 "phosphorelay response regulator activity"
evidence=ISS] [GO:0000160 "phosphorelay signal transduction system"
evidence=ISS] InterPro:IPR001789 InterPro:IPR001867 Pfam:PF00072
Pfam:PF00486 PROSITE:PS50110 SMART:SM00448 SMART:SM00862
GO:GO:0006355 GO:GO:0035556 GO:GO:0003677 Gene3D:1.10.10.10
InterPro:IPR011991 GO:GO:0005622 EMBL:AE014299
GenomeReviews:AE014299_GR GO:GO:0000156 InterPro:IPR011006
SUPFAM:SSF52172 HOGENOM:HOG000034819 HSSP:P08402 KO:K07772
ProtClustDB:PRK10766 RefSeq:NP_716851.1 ProteinModelPortal:Q8EHJ3
SMR:Q8EHJ3 GeneID:1169054 KEGG:son:SO_1228 PATRIC:23522112
OMA:QHIDLVM Uniprot:Q8EHJ3
Length = 236
Score = 106 (42.4 bits), Expect = 0.00062, P = 0.00062
Identities = 28/91 (30%), Positives = 52/91 (57%)
Query: 72 DEEQSINGFDGLKVDLIITDYCMPGMTGYELLKKIKDSSALREIPVVIMSSENILARIDR 131
D EQ F+ +DLI+ D +PG+ G L ++++ S + ++++S + ID+
Sbjct: 34 DGEQMWYEFNRQHIDLIMLDINLPGVDGLSLTRELRSRS---HVGIILVSGRD--ESIDK 88
Query: 132 C--LEDGAEDFIVKPVKLSDVK-RIKDYLTR 159
LE GA+D++ KP +L ++ R+K+ L R
Sbjct: 89 IVGLEMGADDYVTKPFELRELLVRVKNLLWR 119
>UNIPROTKB|Q9KQ05 [details] [associations]
symbol:VC_2202 "Chemotaxis protein CheV" species:243277
"Vibrio cholerae O1 biovar El Tor str. N16961" [GO:0004871 "signal
transducer activity" evidence=ISS] [GO:0006935 "chemotaxis"
evidence=ISS] InterPro:IPR001789 InterPro:IPR002545 Pfam:PF00072
Pfam:PF01584 PROSITE:PS50110 PROSITE:PS50851 SMART:SM00260
SMART:SM00448 GO:GO:0006355 GO:GO:0035556 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0005622 GO:GO:0006935 GO:GO:0004871
GO:GO:0000156 InterPro:IPR011006 SUPFAM:SSF52172 SUPFAM:SSF50341
KO:K03415 InterPro:IPR024181 PIRSF:PIRSF002867 OMA:QVSRCLQ
HSSP:P06143 PIR:A82107 RefSeq:NP_231833.1 ProteinModelPortal:Q9KQ05
DNASU:2613242 GeneID:2613242 KEGG:vch:VC2202 PATRIC:20083447
ProtClustDB:CLSK2300370 Uniprot:Q9KQ05
Length = 308
Score = 108 (43.1 bits), Expect = 0.00063, P = 0.00063
Identities = 35/116 (30%), Positives = 59/116 (50%)
Query: 32 VLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQ-FLGLDEEQSINGFDGLKVDLIIT 90
+L DDS V RK ++R + +V G+ A + L + E I+ ++ L+I+
Sbjct: 184 ILIADDSSVARKQVQRAIESIGFEVVTTKDGKDAYEKLLEMLSEGPISN----QISLVIS 239
Query: 91 DYCMPGMTGYELLKKIKDSSALREIPVVIMSS-ENIL--ARIDRCLEDGAEDFIVK 143
D MP M GY L +I+ + L+++ V++ SS + A ++R GA FI K
Sbjct: 240 DIEMPEMDGYTLTAEIRRHNELKDLYVILHSSLSGVFNQAMVERV---GANAFIAK 292
WARNING: HSPs involving 25 database sequences were not reported due to the
limiting value of parameter B = 250.
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.318 0.136 0.376 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 233 196 0.00080 111 3 11 22 0.49 32
31 0.44 35
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 275
No. of states in DFA: 543 (58 KB)
Total size of DFA: 132 KB (2084 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 18.27u 0.20s 18.47t Elapsed: 00:00:01
Total cpu time: 18.30u 0.20s 18.50t Elapsed: 00:00:01
Start: Sat May 11 05:20:42 2013 End: Sat May 11 05:20:43 2013
WARNINGS ISSUED: 2