BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 026776
(233 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3GT7|A Chain A, Crystal Structure Of Signal Receiver Domain Of Signal
Transduction Histidine Kinase From Syntrophus
Aciditrophicus
Length = 154
Score = 70.5 bits (171), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 50/150 (33%), Positives = 77/150 (51%), Gaps = 25/150 (16%)
Query: 32 VLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITD 91
+L V+DS + ++ +L + + V +GR A++FL L + DLII+D
Sbjct: 10 ILIVEDSPTQAEHLKHILEETGYQTEHVRNGREAVRFLSLT-----------RPDLIISD 58
Query: 92 YCMPGMTGYELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVK----- 146
MP M GY L + +K LR IPV++++ + + R LE GA+DFI KP K
Sbjct: 59 VLMPEMDGYALCRWLKGQPDLRTIPVILLTILSDPRDVVRSLECGADDFITKPCKDVVLA 118
Query: 147 ------LSDVKRIKDYLTRD---VNLGNEG 167
LS VKR ++ +R+ + GNEG
Sbjct: 119 SHVKRLLSGVKRTEERYSRESITLAFGNEG 148
>pdb|3M6M|D Chain D, Crystal Structure Of Rpff Complexed With Rec Domain Of
Rpfc
pdb|3M6M|E Chain E, Crystal Structure Of Rpff Complexed With Rec Domain Of
Rpfc
pdb|3M6M|F Chain F, Crystal Structure Of Rpff Complexed With Rec Domain Of
Rpfc
Length = 143
Score = 61.6 bits (148), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 37/116 (31%), Positives = 59/116 (50%), Gaps = 13/116 (11%)
Query: 32 VLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITD 91
+L DD +R V++RLL + KV V+ EQ ++ D +I D
Sbjct: 17 MLVADDHEANRMVLQRLLEKAGHKVLCVNGA-----------EQVLDAMAEEDYDAVIVD 65
Query: 92 YCMPGMTGYELLKKIK--DSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPV 145
MPGM G ++LK+++ +S +R PVV++S++ I C + GA F+ KPV
Sbjct: 66 LHMPGMNGLDMLKQLRVMQASGMRYTPVVVLSADVTPEAIRACEQAGARAFLAKPV 121
>pdb|3GWG|A Chain A, Crystal Structure Of Chey Of Helicobacter Pylori
pdb|3H1E|A Chain A, Crystal Structure Of Mg(2+) And Beh(3)(-)-Bound Chey Of
Heli Pylori
Length = 129
Score = 58.5 bits (140), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 63/116 (54%), Gaps = 11/116 (9%)
Query: 30 VHVLAVDDSFVDRKVIERLLT-ISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLI 88
+ +L VDDS R++I+ L+ + V + G A + L + + + +
Sbjct: 6 MKLLVVDDSSTMRRIIKNTLSRLGYEDVLEAEHGVEAWEKLDANADTKV----------L 55
Query: 89 ITDYCMPGMTGYELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKP 144
ITD+ MP M G +L+KK++ S +EIP++++++E A + L+ G ++IVKP
Sbjct: 56 ITDWNMPEMNGLDLVKKVRSDSRFKEIPIIMITTEGGKAEVITALKAGVNNYIVKP 111
>pdb|3H1G|A Chain A, Crystal Structure Of Chey Mutant T84a Of Helicobacter
Pylori
Length = 129
Score = 58.5 bits (140), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 63/116 (54%), Gaps = 11/116 (9%)
Query: 30 VHVLAVDDSFVDRKVIERLLT-ISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLI 88
+ +L VDDS R++I+ L+ + V + G A + L + + + +
Sbjct: 6 MKLLVVDDSSTMRRIIKNTLSRLGYEDVLEAEHGVEAWEKLDANADTKV----------L 55
Query: 89 ITDYCMPGMTGYELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKP 144
ITD+ MP M G +L+KK++ S +EIP++++++E A + L+ G ++IVKP
Sbjct: 56 ITDWNMPEMNGLDLVKKVRSDSRFKEIPIIMITAEGGKAEVITALKAGVNNYIVKP 111
>pdb|2WB4|A Chain A, Activated Diguanylate Cyclase Pled In Complex With
C-Di-Gmp
pdb|2WB4|B Chain B, Activated Diguanylate Cyclase Pled In Complex With
C-Di-Gmp
Length = 459
Score = 57.4 bits (137), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 39/116 (33%), Positives = 59/116 (50%), Gaps = 15/116 (12%)
Query: 32 VLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITD 91
+L VDD + +++E LT +V+ G AL D D+I+ D
Sbjct: 5 ILVVDDIEANVRLLEAKLTAEYYEVSTAMDGPTALAMAARDLP-----------DIILLD 53
Query: 92 YCMPGMTGYELLKKIKDSSALREIPVVIMSSENILARIDRC--LEDGAEDFIVKPV 145
MPGM G+ + +K+KD R IPVV++++ + R DR LE GA DF+ KP+
Sbjct: 54 VMMPGMDGFTVCRKLKDDPTTRHIPVVLITALD--GRGDRIQGLESGASDFLTKPI 107
Score = 34.3 bits (77), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 21/91 (23%), Positives = 39/91 (42%), Gaps = 10/91 (10%)
Query: 82 GLKVDLIITDYCMPGMTGYELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFI 141
G VDL+I + G ++ R++PV+ M + R+ + LE G D +
Sbjct: 193 GGPVDLVIVNAAAKNFDGLRFTAALRSEERTRQLPVLAMVDPDDRGRMVKALEIGVNDIL 252
Query: 142 VKPVKLSDV----------KRIKDYLTRDVN 162
+P+ ++ KR DYL +++
Sbjct: 253 SRPIDPQELSARVKTQIQRKRYTDYLRNNLD 283
>pdb|1W25|A Chain A, Response Regulator Pled In Complex With C-digmp
pdb|1W25|B Chain B, Response Regulator Pled In Complex With C-digmp
pdb|2V0N|A Chain A, Activated Response Regulator Pled In Complex With C-Digmp
And Gtp-Alpha-S
pdb|2V0N|B Chain B, Activated Response Regulator Pled In Complex With C-Digmp
And Gtp-Alpha-S
Length = 459
Score = 57.4 bits (137), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 39/116 (33%), Positives = 59/116 (50%), Gaps = 15/116 (12%)
Query: 32 VLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITD 91
+L VDD + +++E LT +V+ G AL D D+I+ D
Sbjct: 4 ILVVDDIEANVRLLEAKLTAEYYEVSTAMDGPTALAMAARDLP-----------DIILLD 52
Query: 92 YCMPGMTGYELLKKIKDSSALREIPVVIMSSENILARIDRC--LEDGAEDFIVKPV 145
MPGM G+ + +K+KD R IPVV++++ + R DR LE GA DF+ KP+
Sbjct: 53 VMMPGMDGFTVCRKLKDDPTTRHIPVVLITALD--GRGDRIQGLESGASDFLTKPI 106
Score = 34.3 bits (77), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 21/91 (23%), Positives = 39/91 (42%), Gaps = 10/91 (10%)
Query: 82 GLKVDLIITDYCMPGMTGYELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFI 141
G VDL+I + G ++ R++PV+ M + R+ + LE G D +
Sbjct: 192 GGPVDLVIVNAAAKNFDGLRFTAALRSEERTRQLPVLAMVDPDDRGRMVKALEIGVNDIL 251
Query: 142 VKPVKLSDV----------KRIKDYLTRDVN 162
+P+ ++ KR DYL +++
Sbjct: 252 SRPIDPQELSARVKTQIQRKRYTDYLRNNLD 282
>pdb|3TO5|A Chain A, High Resolution Structure Of Chey3 From Vibrio Cholerae
Length = 134
Score = 56.2 bits (134), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/126 (27%), Positives = 61/126 (48%), Gaps = 12/126 (9%)
Query: 27 TEEVHVLAVDDSFVDRKVIERLLT-ISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKV 85
+ + +L VDD R++++ LL + D G AL L +
Sbjct: 10 NKNMKILIVDDFSTMRRIVKNLLRDLGFNNTQEADDGLTALPMLKKGD-----------F 58
Query: 86 DLIITDYCMPGMTGYELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPV 145
D ++TD+ MPGM G +LLK I+ L+ +PV+++++E +I + G +IVKP
Sbjct: 59 DFVVTDWNMPGMQGIDLLKNIRADEELKHLPVLMITAEAKREQIIEAAQAGVNGYIVKPF 118
Query: 146 KLSDVK 151
+ +K
Sbjct: 119 TAATLK 124
>pdb|1ZES|A Chain A, Bef3- Activated Phob Receiver Domain
pdb|1ZES|B Chain B, Bef3- Activated Phob Receiver Domain
pdb|1ZES|C Chain C, Bef3- Activated Phob Receiver Domain
Length = 125
Score = 55.8 bits (133), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 51/89 (57%), Gaps = 1/89 (1%)
Query: 72 DEEQSINGFDGLKVDLIITDYCMPGMTGYELLKKIKDSSALREIPVVIMSSENILARIDR 131
D + ++N + DLI+ D+ +PG +G + +K +K S R+IPVV++++ R
Sbjct: 34 DYDSAVNQLNEPWPDLILLDWMLPGGSGIQFIKHLKRESMTRDIPVVMLTARGEEEDRVR 93
Query: 132 CLEDGAEDFIVKPVKLSD-VKRIKDYLTR 159
LE GA+D+I KP + V RIK + R
Sbjct: 94 GLETGADDYITKPFSPKELVARIKAVMRR 122
>pdb|1B00|A Chain A, Phob Receiver Domain From Escherichia Coli
pdb|1B00|B Chain B, Phob Receiver Domain From Escherichia Coli
pdb|2IYN|A Chain A, The Co-Factor-Induced Pre-Active Conformation In Phob
pdb|2IYN|B Chain B, The Co-Factor-Induced Pre-Active Conformation In Phob
pdb|2IYN|C Chain C, The Co-Factor-Induced Pre-Active Conformation In Phob
Length = 127
Score = 55.8 bits (133), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/89 (34%), Positives = 51/89 (57%), Gaps = 1/89 (1%)
Query: 72 DEEQSINGFDGLKVDLIITDYCMPGMTGYELLKKIKDSSALREIPVVIMSSENILARIDR 131
D + ++N + DLI+ D+ +PG +G + +K +K S R+IPVV++++ R
Sbjct: 34 DYDSAVNQLNEPWPDLILLDWMLPGGSGIQFIKHLKRESMTRDIPVVMLTARGEEEDRVR 93
Query: 132 CLEDGAEDFIVKPVKLSD-VKRIKDYLTR 159
LE GA+D+I KP + V RIK + R
Sbjct: 94 GLETGADDYITKPFSPKELVARIKAVMRR 122
>pdb|3H1F|A Chain A, Crystal Structure Of Chey Mutant D53a Of Helicobacter
Pylori
Length = 129
Score = 55.8 bits (133), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 33/116 (28%), Positives = 62/116 (53%), Gaps = 11/116 (9%)
Query: 30 VHVLAVDDSFVDRKVIERLLT-ISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLI 88
+ +L VDDS R++I+ L+ + V + G A + L + + + +
Sbjct: 6 MKLLVVDDSSTMRRIIKNTLSRLGYEDVLEAEHGVEAWEKLDANADTKV----------L 55
Query: 89 ITDYCMPGMTGYELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKP 144
IT + MP M G +L+KK++ S +EIP++++++E A + L+ G ++IVKP
Sbjct: 56 ITAWNMPEMNGLDLVKKVRSDSRFKEIPIIMITTEGGKAEVITALKAGVNNYIVKP 111
>pdb|2CHE|A Chain A, Structure Of The Mg2+-Bound Form Of Chey And Mechanism Of
Phosphoryl Transfer In Bacterial Chemotaxis
pdb|2CHF|A Chain A, Structure Of The Mg2+-Bound Form Of Chey And The Mechanism
Of Phosphoryl Transfer In Bacterial Chemotaxis
pdb|2PL9|A Chain A, Crystal Structure Of Chey-Mg(2+)-Bef(3)(-) In Complex With
Chez(C19) Peptide Solved From A P2(1)2(1)2 Crystal
pdb|2PL9|B Chain B, Crystal Structure Of Chey-Mg(2+)-Bef(3)(-) In Complex With
Chez(C19) Peptide Solved From A P2(1)2(1)2 Crystal
pdb|2PL9|C Chain C, Crystal Structure Of Chey-Mg(2+)-Bef(3)(-) In Complex With
Chez(C19) Peptide Solved From A P2(1)2(1)2 Crystal
pdb|2PMC|A Chain A, Crystal Structure Of Chey-mg(2+) In Complex With Chez(c15)
Peptide Solved From A P1 Crystal
pdb|2PMC|B Chain B, Crystal Structure Of Chey-mg(2+) In Complex With Chez(c15)
Peptide Solved From A P1 Crystal
pdb|2PMC|C Chain C, Crystal Structure Of Chey-mg(2+) In Complex With Chez(c15)
Peptide Solved From A P1 Crystal
pdb|2PMC|D Chain D, Crystal Structure Of Chey-mg(2+) In Complex With Chez(c15)
Peptide Solved From A P1 Crystal
Length = 128
Score = 54.3 bits (129), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 38/118 (32%), Positives = 58/118 (49%), Gaps = 12/118 (10%)
Query: 28 EEVHVLAVDDSFVDRKVIERLLT-ISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVD 86
+E+ L VDD R+++ LL + V + G AL L GF
Sbjct: 3 KELKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKL------QAGGFG----- 51
Query: 87 LIITDYCMPGMTGYELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKP 144
II+D+ MP M G ELLK I+ SA+ +PV+++++E I + GA ++VKP
Sbjct: 52 FIISDWNMPNMDGLELLKTIRADSAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKP 109
>pdb|1YMV|A Chain A, Signal Transduction Protein Chey Mutant With Phe 14
Replaced By Gly, Ser 15 Replaced By Gly, And Met 17
Replaced By Gly
Length = 129
Score = 54.3 bits (129), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 58/121 (47%), Gaps = 18/121 (14%)
Query: 28 EEVHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQ----SINGFDGL 83
+E+ L VDD R+++ LL + L F ++E + ++N
Sbjct: 4 KELKFLVVDDGGTGRRIVRNLL--------------KELGFNNVEEAEDGVDALNKLQAG 49
Query: 84 KVDLIITDYCMPGMTGYELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVK 143
+I+D+ MP M G ELLK I+ A+ +PV+++++E I + GA ++VK
Sbjct: 50 GYGFVISDWNMPNMDGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVK 109
Query: 144 P 144
P
Sbjct: 110 P 110
>pdb|2JB9|A Chain A, Phob Response Regulator Receiver Domain Constitutively-
Active Double Mutant D10a And D53e.
pdb|2JB9|B Chain B, Phob Response Regulator Receiver Domain Constitutively-
Active Double Mutant D10a And D53e
Length = 127
Score = 54.3 bits (129), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 51/89 (57%), Gaps = 1/89 (1%)
Query: 72 DEEQSINGFDGLKVDLIITDYCMPGMTGYELLKKIKDSSALREIPVVIMSSENILARIDR 131
D + ++N + DLI+ ++ +PG +G + +K +K S R+IPVV++++ R
Sbjct: 34 DYDSAVNQLNEPWPDLILLEWMLPGGSGIQFIKHLKRESMTRDIPVVMLTARGEEEDRVR 93
Query: 132 CLEDGAEDFIVKPVKLSD-VKRIKDYLTR 159
LE GA+D+I KP + V RIK + R
Sbjct: 94 GLETGADDYITKPFSPKELVARIKAVMRR 122
>pdb|2FKA|A Chain A, Crystal Structure Of Mg(2+) And Bef(3)(-)-Bound Chey In
Complex With Chez(200-214) Solved From A F432 Crystal
Grown In Caps (Ph 10.5)
pdb|2FLK|A Chain A, Crystal Structure Of Chey In Complex With Chez(200-214)
Solved From A F432 Crystal Grown In Caps (Ph 10.5)
pdb|2FLW|A Chain A, Crystal Structure Of Mg2+ And Bef3- Ound Chey In Complex
With Chez 200-214 Solved From A F432 Crystal Grown In
Hepes (ph 7.5)
pdb|2FMF|A Chain A, Crystal Structure Of Chey In Complex With Chez 200-214
Solved From A F432 Crystal Grown In Hepes (ph 7.5)
pdb|2FMH|A Chain A, Crystal Structure Of Mg2+ And Bef3- Bound Chey In Complex
With Chez 200-214 Solved From A F432 Crystal Grown In
Tris (Ph 8.4)
pdb|2FMI|A Chain A, Crystal Structure Of Chey In Complex With Chez 200-214
Solved From A F432 Crystal Grown In Tris (Ph 8.4)
pdb|2FMK|A Chain A, Crystal Structure Of Mg2+ And Bef3- Bound Chey In Complex
With Chez 200-214 Solved From A P2(1)2(1)2 Crystal Grown
In Mes (Ph 6.0)
Length = 129
Score = 54.3 bits (129), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 35/121 (28%), Positives = 59/121 (48%), Gaps = 18/121 (14%)
Query: 28 EEVHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQ----SINGFDGL 83
+E+ L VDD R+++ LL + L F ++E + ++N
Sbjct: 4 KELKFLVVDDFSTMRRIVRNLL--------------KELGFNNVEEAEDGVDALNKLQAG 49
Query: 84 KVDLIITDYCMPGMTGYELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVK 143
II+D+ MP M G ELLK I+ SA+ +PV+++++E I + GA ++VK
Sbjct: 50 GFGFIISDWNMPNMDGLELLKTIRADSAMSALPVLMVTAEAKKENIIAAAQAGASGYVVK 109
Query: 144 P 144
P
Sbjct: 110 P 110
>pdb|3EOD|A Chain A, Crystal Structure Of N-Terminal Domain Of E. Coli Rssb
Length = 130
Score = 53.9 bits (128), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 40/126 (31%), Positives = 67/126 (53%), Gaps = 17/126 (13%)
Query: 31 HVLAVDDSFVDRKVIERLLT-ISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLII 89
+L V+D V R +++ + + + V A D G AL+ LG G DL+I
Sbjct: 9 QILIVEDEQVFRSLLDSWFSSLGATTVLAAD-GVDALELLG-----------GFTPDLMI 56
Query: 90 TDYCMPGMTGYELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVKLSD 149
D MP M G +LL+ I++ + PV+++S+ +A I + L G ED ++KPVK D
Sbjct: 57 CDIAMPRMNGLKLLEHIRNRG--DQTPVLVISATENMADIAKALRLGVEDVLLKPVK--D 112
Query: 150 VKRIKD 155
+ R+++
Sbjct: 113 LNRLRE 118
>pdb|1YMU|A Chain A, Signal Transduction Protein Chey Mutant With Met 17
Replaced By Gly (M17g)
pdb|1YMU|B Chain B, Signal Transduction Protein Chey Mutant With Met 17
Replaced By Gly (M17g)
Length = 130
Score = 53.1 bits (126), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 58/121 (47%), Gaps = 18/121 (14%)
Query: 28 EEVHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQ----SINGFDGL 83
+E+ L VDD R+++ LL + L F ++E + ++N
Sbjct: 5 KELKFLVVDDFSTGRRIVRNLL--------------KELGFNNVEEAEDGVDALNKLQAG 50
Query: 84 KVDLIITDYCMPGMTGYELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVK 143
+I+D+ MP M G ELLK I+ A+ +PV+++++E I + GA ++VK
Sbjct: 51 GYGFVISDWNMPNMDGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVK 110
Query: 144 P 144
P
Sbjct: 111 P 111
>pdb|2CHY|A Chain A, Three-Dimensional Structure Of Chey, The Response
Regulator Of Bacterial Chemotaxis
Length = 128
Score = 53.1 bits (126), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 35/121 (28%), Positives = 58/121 (47%), Gaps = 18/121 (14%)
Query: 28 EEVHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQ----SINGFDGL 83
+E+ L VDD R+++ LL + L F ++E + ++N
Sbjct: 3 KELKFLVVDDFSTMRRIVRNLL--------------KELGFNNVEEAEDGVDALNKLQAG 48
Query: 84 KVDLIITDYCMPGMTGYELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVK 143
II D+ MP M G ELLK I+ SA+ +PV+++++E I + GA ++VK
Sbjct: 49 GFGFIICDWNMPNMDGLELLKTIRADSAMSALPVLMVTAEAKKENIIAAAQAGASGYVVK 108
Query: 144 P 144
P
Sbjct: 109 P 109
>pdb|3OLX|A Chain A, Structural And Functional Effects Of Substitution At
Position T+1 In Chey: Cheya88s-Bef3-Mn Complex
pdb|3OLX|B Chain B, Structural And Functional Effects Of Substitution At
Position T+1 In Chey: Cheya88s-Bef3-Mn Complex
Length = 129
Score = 53.1 bits (126), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 34/121 (28%), Positives = 58/121 (47%), Gaps = 18/121 (14%)
Query: 28 EEVHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQ----SINGFDGL 83
+E+ L VDD R+++ LL + L F ++E + ++N
Sbjct: 4 KELKFLVVDDFSTMRRIVRNLL--------------KELGFNNVEEAEDGVDALNKLQAG 49
Query: 84 KVDLIITDYCMPGMTGYELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVK 143
+I+D+ MP M G ELLK I+ A+ +PV++++SE I + GA ++VK
Sbjct: 50 GYGFVISDWNMPNMDGLELLKTIRADGAMSALPVLMVTSEAKKENIIAAAQAGASGYVVK 109
Query: 144 P 144
P
Sbjct: 110 P 110
>pdb|1AB6|A Chain A, Structure Of Chey Mutant F14n, V86t
pdb|1AB6|B Chain B, Structure Of Chey Mutant F14n, V86t
Length = 125
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 57/120 (47%), Gaps = 18/120 (15%)
Query: 29 EVHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQ----SINGFDGLK 84
E+ L VDD+ R+++ LL + L F ++E + ++N
Sbjct: 1 ELKFLVVDDNSTMRRIVRNLL--------------KELGFNNVEEAEDGVDALNKLQAGG 46
Query: 85 VDLIITDYCMPGMTGYELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKP 144
+I+D+ MP M G ELLK I+ A+ +PV++ ++E I + GA ++VKP
Sbjct: 47 YGFVISDWNMPNMDGLELLKTIRADGAMSALPVLMTTAEAKKENIIAAAQAGASGYVVKP 106
>pdb|2AYZ|A Chain A, Solution Structure Of The E.Coli Rcsc C-Terminus (Residues
817-949) Containing Phosphoreceiver Domain
Length = 133
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/128 (25%), Positives = 63/128 (49%), Gaps = 13/128 (10%)
Query: 25 SDTEEVHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLK 84
SD +++ +L VDD ++R+++ L + + G AL L +
Sbjct: 4 SDNDDMMILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVLSKNH----------- 52
Query: 85 VDLIITDYCMPGMTGYELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKP 144
+D++++D MP M GY L ++I+ +PV+ +++ + RCLE G + + KP
Sbjct: 53 IDIVLSDVNMPNMDGYRLTQRIRQLGL--TLPVIGVTANALAEEKQRCLESGMDSCLSKP 110
Query: 145 VKLSDVKR 152
V L +K+
Sbjct: 111 VTLDVIKQ 118
>pdb|1UDR|A Chain A, Chey Mutant With Lys 91 Replaced By Asp, Lys 92 Replaced
By Ala, Ile 96 Replaced By Lys And Ala 98 Replaced By
Leu (Stabilizing Mutations In Helix 4)
pdb|1UDR|B Chain B, Chey Mutant With Lys 91 Replaced By Asp, Lys 92 Replaced
By Ala, Ile 96 Replaced By Lys And Ala 98 Replaced By
Leu (Stabilizing Mutations In Helix 4)
pdb|1UDR|C Chain C, Chey Mutant With Lys 91 Replaced By Asp, Lys 92 Replaced
By Ala, Ile 96 Replaced By Lys And Ala 98 Replaced By
Leu (Stabilizing Mutations In Helix 4)
pdb|1UDR|D Chain D, Chey Mutant With Lys 91 Replaced By Asp, Lys 92 Replaced
By Ala, Ile 96 Replaced By Lys And Ala 98 Replaced By
Leu (Stabilizing Mutations In Helix 4)
Length = 129
Score = 52.8 bits (125), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 58/121 (47%), Gaps = 18/121 (14%)
Query: 28 EEVHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQ----SINGFDGL 83
+E+ L VDD R+++ LL + L F ++E + ++N
Sbjct: 4 KELKFLVVDDFSTMRRIVRNLL--------------KELGFNNVEEAEDGVDALNKLQAG 49
Query: 84 KVDLIITDYCMPGMTGYELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVK 143
+I+D+ MP M G ELLK I+ A+ +PV+++++E I + GA ++VK
Sbjct: 50 GYGFVISDWNMPNMDGLELLKTIRADGAMSALPVLMVTAEADAENIKALAQAGASGYVVK 109
Query: 144 P 144
P
Sbjct: 110 P 110
>pdb|3MM4|A Chain A, Crystal Structure Of The Receiver Domain Of The Histidine
Kinase Cki1 From Arabidopsis Thaliana
pdb|3MMN|A Chain A, Crystal Structure Of The Receiver Domain Of The Histidine
Kinase Cki1 From Arabidopsis Thaliana Complexed With
Mg2+
Length = 206
Score = 52.4 bits (124), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 38/110 (34%), Positives = 58/110 (52%), Gaps = 10/110 (9%)
Query: 24 PSDTEEVH---VLAVDDSFVDRKVIE-RLLTISSCKVTAVDSGRRALQFL--GLDEEQSI 77
PSD E + VL VDD+F+ RKV +L + +V DSG+ AL+ + GL + +
Sbjct: 53 PSDDEFLRGKRVLVVDDNFISRKVATGKLKKMGVSEVEQCDSGKEALRLVTEGLTQREEQ 112
Query: 78 NGFDGLKVDLIITDYCMPGMTGYEL---LKKIKDSSALREIPVVIMSSEN 124
D L D I D MP M GYE ++K++ S +R P++ +S +
Sbjct: 113 GSVDKLPFDYIFMDCQMPEMDGYEATREIRKVEKSYGVR-TPIIAVSGHD 161
>pdb|2AYX|A Chain A, Solution Structure Of The E.Coli Rcsc C-Terminus (Residues
700-949) Containing Linker Region And Phosphoreceiver
Domain
Length = 254
Score = 52.4 bits (124), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 34/139 (24%), Positives = 68/139 (48%), Gaps = 13/139 (9%)
Query: 14 SDEIDGFDLSPSDTEEVHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDE 73
++ + D + SD +++ +L VDD ++R+++ L + + G AL L +
Sbjct: 114 ANALPSTDKAVSDNDDMMILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVLSKNH 173
Query: 74 EQSINGFDGLKVDLIITDYCMPGMTGYELLKKIKDSSALREIPVVIMSSENILARIDRCL 133
+D++++D MP M GY L ++I+ +PV+ +++ + RCL
Sbjct: 174 -----------IDIVLSDVNMPNMDGYRLTQRIRQLGL--TLPVIGVTANALAEEKQRCL 220
Query: 134 EDGAEDFIVKPVKLSDVKR 152
E G + + KPV L +K+
Sbjct: 221 ESGMDSCLSKPVTLDVIKQ 239
>pdb|1CYE|A Chain A, Three Dimensional Structure Of Chemotactic Che Y Protein
In Aqueous Solution By Nuclear Magnetic Resonance
Methods
Length = 129
Score = 52.4 bits (124), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 58/121 (47%), Gaps = 18/121 (14%)
Query: 28 EEVHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQ----SINGFDGL 83
+E+ L VDD R+++ LL + L F ++E + ++N
Sbjct: 4 KELKFLVVDDFSTMRRIVRNLL--------------KELGFNNVEEAEDGVDALNKLQAG 49
Query: 84 KVDLIITDYCMPGMTGYELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVK 143
+I+D+ MP M G ELLK I+ A+ +PV+++++E I + GA ++VK
Sbjct: 50 GYGFVISDWNMPNMDGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVK 109
Query: 144 P 144
P
Sbjct: 110 P 110
>pdb|1JBE|A Chain A, 1.08 A Structure Of Apo-Chey Reveals Meta-Active
Conformation
Length = 128
Score = 52.4 bits (124), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 58/121 (47%), Gaps = 18/121 (14%)
Query: 28 EEVHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQ----SINGFDGL 83
+E+ L VDD R+++ LL + L F ++E + ++N
Sbjct: 3 KELKFLVVDDFSTMRRIVRNLL--------------KELGFNNVEEAEDGVDALNKLQAG 48
Query: 84 KVDLIITDYCMPGMTGYELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVK 143
+I+D+ MP M G ELLK I+ A+ +PV+++++E I + GA ++VK
Sbjct: 49 GYGFVISDWNMPNMDGLELLKTIRAXXAMSALPVLMVTAEAKKENIIAAAQAGASGYVVK 108
Query: 144 P 144
P
Sbjct: 109 P 109
>pdb|3OLW|A Chain A, Structural And Functional Effects Of Substitution At
Position T+1 In Chey: Cheya88t-Bef3-Mn Complex
pdb|3OLW|B Chain B, Structural And Functional Effects Of Substitution At
Position T+1 In Chey: Cheya88t-Bef3-Mn Complex
Length = 129
Score = 52.0 bits (123), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 58/121 (47%), Gaps = 18/121 (14%)
Query: 28 EEVHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQ----SINGFDGL 83
+E+ L VDD R+++ LL + L F ++E + ++N
Sbjct: 4 KELKFLVVDDFSTMRRIVRNLL--------------KELGFNNVEEAEDGVDALNKLQAG 49
Query: 84 KVDLIITDYCMPGMTGYELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVK 143
+I+D+ MP M G ELLK I+ A+ +PV+++++E I + GA ++VK
Sbjct: 50 GYGFVISDWNMPNMDGLELLKTIRADGAMSALPVLMVTTEAKKENIIAAAQAGASGYVVK 109
Query: 144 P 144
P
Sbjct: 110 P 110
>pdb|1EAY|A Chain A, Chey-Binding (P2) Domain Of Chea In Complex With Chey From
Escherichia Coli
pdb|1EAY|B Chain B, Chey-Binding (P2) Domain Of Chea In Complex With Chey From
Escherichia Coli
pdb|1A0O|A Chain A, Chey-Binding Domain Of Chea In Complex With Chey
pdb|1A0O|C Chain C, Chey-Binding Domain Of Chea In Complex With Chey
pdb|1A0O|E Chain E, Chey-Binding Domain Of Chea In Complex With Chey
pdb|1A0O|G Chain G, Chey-Binding Domain Of Chea In Complex With Chey
pdb|1BDJ|A Chain A, Complex Structure Of Hpt Domain And Chey
pdb|1F4V|A Chain A, Crystal Structure Of Activated Chey Bound To The
N-Terminus Of Flim
pdb|1F4V|B Chain B, Crystal Structure Of Activated Chey Bound To The
N-Terminus Of Flim
pdb|1F4V|C Chain C, Crystal Structure Of Activated Chey Bound To The
N-Terminus Of Flim
pdb|1FFG|A Chain A, Chey-Binding Domain Of Chea In Complex With Chey At 2.1 A
Resolution
pdb|1FFG|C Chain C, Chey-Binding Domain Of Chea In Complex With Chey At 2.1 A
Resolution
pdb|1FFS|A Chain A, Chey-Binding Domain Of Chea In Complex With Chey From
Crystals Soaked In Acetyl Phosphate
pdb|1FFS|C Chain C, Chey-Binding Domain Of Chea In Complex With Chey From
Crystals Soaked In Acetyl Phosphate
pdb|1FFW|A Chain A, Chey-Binding Domain Of Chea In Complex With Chey With A
Bound Imido Diphosphate
pdb|1FFW|C Chain C, Chey-Binding Domain Of Chea In Complex With Chey With A
Bound Imido Diphosphate
pdb|1FQW|A Chain A, Crystal Structure Of Activated Chey
pdb|1FQW|B Chain B, Crystal Structure Of Activated Chey
pdb|2B1J|A Chain A, Crystal Structure Of Unphosphorylated Chey Bound To The N-
Terminus Of Flim
pdb|2B1J|B Chain B, Crystal Structure Of Unphosphorylated Chey Bound To The N-
Terminus Of Flim
pdb|1CHN|A Chain A, Magnesium Binding To The Bacterial Chemotaxis Protein Chey
Results In Large Conformational Changes Involving Its
Functional Surface
pdb|3CHY|A Chain A, Crystal Structure Of Escherichia Coli Chey Refined At 1.7-
Angstrom Resolution
pdb|2LP4|Y Chain Y, Solution Structure Of P1-CheyP2 COMPLEX IN BACTERIAL
CHEMOTAXIS
Length = 128
Score = 52.0 bits (123), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 58/121 (47%), Gaps = 18/121 (14%)
Query: 28 EEVHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQ----SINGFDGL 83
+E+ L VDD R+++ LL + L F ++E + ++N
Sbjct: 3 KELKFLVVDDFSTMRRIVRNLL--------------KELGFNNVEEAEDGVDALNKLQAG 48
Query: 84 KVDLIITDYCMPGMTGYELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVK 143
+I+D+ MP M G ELLK I+ A+ +PV+++++E I + GA ++VK
Sbjct: 49 GYGFVISDWNMPNMDGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVK 108
Query: 144 P 144
P
Sbjct: 109 P 109
>pdb|1DJM|A Chain A, Solution Structure Of Bef3-Activated Chey From Escherichia
Coli
pdb|1KMI|Y Chain Y, Crystal Structure Of An E.Coli Chemotaxis Protein, Chez
Length = 129
Score = 52.0 bits (123), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 58/121 (47%), Gaps = 18/121 (14%)
Query: 28 EEVHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQ----SINGFDGL 83
+E+ L VDD R+++ LL + L F ++E + ++N
Sbjct: 4 KELKFLVVDDFSTMRRIVRNLL--------------KELGFNNVEEAEDGVDALNKLQAG 49
Query: 84 KVDLIITDYCMPGMTGYELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVK 143
+I+D+ MP M G ELLK I+ A+ +PV+++++E I + GA ++VK
Sbjct: 50 GYGFVISDWNMPNMDGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVK 109
Query: 144 P 144
P
Sbjct: 110 P 110
>pdb|3MYY|A Chain A, Structure Of E. Coli Chey Mutant A113p Bound To Beryllium
Fluoride
pdb|3MYY|B Chain B, Structure Of E. Coli Chey Mutant A113p Bound To Beryllium
Fluoride
Length = 128
Score = 52.0 bits (123), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 58/121 (47%), Gaps = 18/121 (14%)
Query: 28 EEVHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQ----SINGFDGL 83
+E+ L VDD R+++ LL + L F ++E + ++N
Sbjct: 3 KELKFLVVDDFSTMRRIVRNLL--------------KELGFNNVEEAEDGVDALNKLQAG 48
Query: 84 KVDLIITDYCMPGMTGYELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVK 143
+I+D+ MP M G ELLK I+ A+ +PV+++++E I + GA ++VK
Sbjct: 49 GYGFVISDWNMPNMDGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVK 108
Query: 144 P 144
P
Sbjct: 109 P 109
>pdb|1CEY|A Chain A, Assignments, Secondary Structure, Global Fold, And
Dynamics Of Chemotaxis Y Protein Using Three-And
Four-Dimensional Heteronuclear (13c,15n) Nmr
Spectroscopy
Length = 128
Score = 52.0 bits (123), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 58/121 (47%), Gaps = 18/121 (14%)
Query: 28 EEVHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQ----SINGFDGL 83
+E+ L VDD R+++ LL + L F ++E + ++N
Sbjct: 3 KELKFLVVDDFSTMRRIVRNLL--------------KELGFNNVEEAEDGVDALNKLQAG 48
Query: 84 KVDLIITDYCMPGMTGYELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVK 143
+I+D+ MP M G ELLK I+ A+ +PV+++++E I + GA ++VK
Sbjct: 49 GYGFVISDWNMPNMDGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVK 108
Query: 144 P 144
P
Sbjct: 109 P 109
>pdb|5CHY|A Chain A, Structure Of Chemotaxis Protein Chey
Length = 128
Score = 52.0 bits (123), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 58/121 (47%), Gaps = 18/121 (14%)
Query: 28 EEVHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQ----SINGFDGL 83
+E+ L VDD R+++ LL + L F ++E + ++N
Sbjct: 3 KELKFLVVDDFSTMRRIVRNLL--------------KELGFNNVEEAEDGVDALNKLQAG 48
Query: 84 KVDLIITDYCMPGMTGYELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVK 143
+I+D+ MP M G ELLK I+ A+ +PV+++++E I + GA ++VK
Sbjct: 49 GYGFVISDWNMPNMDGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGWVVK 108
Query: 144 P 144
P
Sbjct: 109 P 109
>pdb|3OO0|A Chain A, Structure Of Apo Chey A113p
pdb|3OO0|B Chain B, Structure Of Apo Chey A113p
pdb|3OO1|A Chain A, Structure Of E. Coli Chey Mutant A113p In The Absence Of
Sulfate
pdb|3OO1|B Chain B, Structure Of E. Coli Chey Mutant A113p In The Absence Of
Sulfate
Length = 129
Score = 52.0 bits (123), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 58/121 (47%), Gaps = 18/121 (14%)
Query: 28 EEVHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQ----SINGFDGL 83
+E+ L VDD R+++ LL + L F ++E + ++N
Sbjct: 4 KELKFLVVDDFSTMRRIVRNLL--------------KELGFNNVEEAEDGVDALNKLQAG 49
Query: 84 KVDLIITDYCMPGMTGYELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVK 143
+I+D+ MP M G ELLK I+ A+ +PV+++++E I + GA ++VK
Sbjct: 50 GYGFVISDWNMPNMDGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVK 109
Query: 144 P 144
P
Sbjct: 110 P 110
>pdb|1AB5|A Chain A, Structure Of Chey Mutant F14n, V21t
pdb|1AB5|B Chain B, Structure Of Chey Mutant F14n, V21t
Length = 125
Score = 52.0 bits (123), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 33/120 (27%), Positives = 57/120 (47%), Gaps = 18/120 (15%)
Query: 29 EVHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQ----SINGFDGLK 84
E+ L VDD+ R++ LL + L F ++E + ++N
Sbjct: 1 ELKFLVVDDNSTMRRITRNLL--------------KELGFNNVEEAEDGVDALNKLQAGG 46
Query: 85 VDLIITDYCMPGMTGYELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKP 144
+I+D+ MP M G ELLK I+ A+ +PV+++++E I + GA ++VKP
Sbjct: 47 YGFVISDWNMPNMDGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKP 106
>pdb|3FGZ|A Chain A, Crystal Structure Of Chey Triple Mutant F14e, N59m, E89r
Complexed With Bef3- And Mn2+
pdb|3FGZ|B Chain B, Crystal Structure Of Chey Triple Mutant F14e, N59m, E89r
Complexed With Bef3- And Mn2+
Length = 128
Score = 52.0 bits (123), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 35/125 (28%), Positives = 61/125 (48%), Gaps = 26/125 (20%)
Query: 28 EEVHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQ----SINGFDGL 83
+E+ L VDD R+++ LL + L F ++E + ++N
Sbjct: 3 KELKFLVVDDESTMRRIVRNLL--------------KELGFNNVEEAEDGVDALNKLQAG 48
Query: 84 KVDLIITDYCMPGMTGYELLKKIKDSSALREIPVVIMSS----ENILARIDRCLEDGAED 139
+I+D+ MP M G ELLK I+ A+ +PV+++++ ENI+A + GA
Sbjct: 49 GYGFVISDWMMPNMDGLELLKTIRADGAMSALPVLMVTARAKKENIIA----AAQAGASG 104
Query: 140 FIVKP 144
++VKP
Sbjct: 105 YVVKP 109
>pdb|3F7N|A Chain A, Crystal Structure Of Chey Triple Mutant F14e, N59m, E89l
Complexed With Bef3- And Mn2+
pdb|3F7N|B Chain B, Crystal Structure Of Chey Triple Mutant F14e, N59m, E89l
Complexed With Bef3- And Mn2+
Length = 128
Score = 51.6 bits (122), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 35/125 (28%), Positives = 61/125 (48%), Gaps = 26/125 (20%)
Query: 28 EEVHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQ----SINGFDGL 83
+E+ L VDD R+++ LL + L F ++E + ++N
Sbjct: 3 KELKFLVVDDESTMRRIVRNLL--------------KELGFNNVEEAEDGVDALNKLQAG 48
Query: 84 KVDLIITDYCMPGMTGYELLKKIKDSSALREIPVVIMSS----ENILARIDRCLEDGAED 139
+I+D+ MP M G ELLK I+ A+ +PV+++++ ENI+A + GA
Sbjct: 49 GYGFVISDWMMPNMDGLELLKTIRADGAMSALPVLMVTALAKKENIIA----AAQAGASG 104
Query: 140 FIVKP 144
++VKP
Sbjct: 105 YVVKP 109
>pdb|1D4Z|A Chain A, Crystal Structure Of Chey-95iv, A Hyperactive Chey Mutant
Length = 128
Score = 51.6 bits (122), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 32/121 (26%), Positives = 58/121 (47%), Gaps = 18/121 (14%)
Query: 28 EEVHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQ----SINGFDGL 83
+E+ L VDD R+++ LL + L F ++E + ++N
Sbjct: 3 KELKFLVVDDFSTMRRIVRNLL--------------KELGFNNVEEAEDGVDALNKLQAG 48
Query: 84 KVDLIITDYCMPGMTGYELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVK 143
+I+D+ MP M G ELLK I+ A+ +PV+++++E + + GA ++VK
Sbjct: 49 GYGFVISDWNMPNMDGLELLKTIRADGAMSALPVLMVTAEAKKENVIAAAQAGASGYVVK 108
Query: 144 P 144
P
Sbjct: 109 P 109
>pdb|3FFT|A Chain A, Crystal Structure Of Chey Double Mutant F14e, E89r
Complexed With Bef3- And Mn2+
pdb|3FFT|B Chain B, Crystal Structure Of Chey Double Mutant F14e, E89r
Complexed With Bef3- And Mn2+
Length = 128
Score = 51.6 bits (122), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 35/125 (28%), Positives = 61/125 (48%), Gaps = 26/125 (20%)
Query: 28 EEVHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQ----SINGFDGL 83
+E+ L VDD R+++ LL + L F ++E + ++N
Sbjct: 3 KELKFLVVDDESTMRRIVRNLL--------------KELGFNNVEEAEDGVDALNKLQAG 48
Query: 84 KVDLIITDYCMPGMTGYELLKKIKDSSALREIPVVIMSS----ENILARIDRCLEDGAED 139
+I+D+ MP M G ELLK I+ A+ +PV+++++ ENI+A + GA
Sbjct: 49 GYGFVISDWNMPNMDGLELLKTIRADGAMSALPVLMVTARAKKENIIA----AAQAGASG 104
Query: 140 FIVKP 144
++VKP
Sbjct: 105 YVVKP 109
>pdb|1MIH|A Chain A, A Role For Chey Glu 89 In Chez-Mediated Dephosphorylation
Of The E. Coli Chemotaxis Response Regulator Chey
pdb|1MIH|B Chain B, A Role For Chey Glu 89 In Chez-Mediated Dephosphorylation
Of The E. Coli Chemotaxis Response Regulator Chey
Length = 129
Score = 51.6 bits (122), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 58/121 (47%), Gaps = 18/121 (14%)
Query: 28 EEVHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQ----SINGFDGL 83
+E+ L VDD R+++ LL + L F ++E + ++N
Sbjct: 4 KELKFLVVDDFSTMRRIVRNLL--------------KELGFNNVEEAEDGVDALNKLQAG 49
Query: 84 KVDLIITDYCMPGMTGYELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVK 143
+I+D+ MP M G ELLK I+ A+ +PV+++++E I + GA ++VK
Sbjct: 50 GYGFVISDWRMPNMDGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVK 109
Query: 144 P 144
P
Sbjct: 110 P 110
>pdb|3FFW|A Chain A, Crystal Structure Of Chey Triple Mutant F14q, N59k, E89y
Complexed With Bef3- And Mn2+
pdb|3FFW|B Chain B, Crystal Structure Of Chey Triple Mutant F14q, N59k, E89y
Complexed With Bef3- And Mn2+
Length = 128
Score = 51.6 bits (122), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 35/125 (28%), Positives = 61/125 (48%), Gaps = 26/125 (20%)
Query: 28 EEVHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQ----SINGFDGL 83
+E+ L VDD R+++ LL + L F ++E + ++N
Sbjct: 3 KELKFLVVDDQSTMRRIVRNLL--------------KELGFNNVEEAEDGVDALNKLQAG 48
Query: 84 KVDLIITDYCMPGMTGYELLKKIKDSSALREIPVVIMSS----ENILARIDRCLEDGAED 139
+I+D+ MP M G ELLK I+ A+ +PV+++++ ENI+A + GA
Sbjct: 49 GYGFVISDWKMPNMDGLELLKTIRADGAMSALPVLMVTAYAKKENIIA----AAQAGASG 104
Query: 140 FIVKP 144
++VKP
Sbjct: 105 YVVKP 109
>pdb|3F7A|A Chain A, Structure Of Orthorhombic Crystal Form Of Pseudomonas
Aeruginosa Rssb
pdb|3F7A|B Chain B, Structure Of Orthorhombic Crystal Form Of Pseudomonas
Aeruginosa Rssb
Length = 394
Score = 50.8 bits (120), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 48/78 (61%), Gaps = 8/78 (10%)
Query: 75 QSINGFDGLKV------DLIITDYCMPGMTGYELLKKIKDSSALREIPVVIMSSENILAR 128
Q++NG GL++ DL+I D P + G EL+++I+ +++ E P++++S +++
Sbjct: 34 QALNGLQGLQIFESEQPDLVICDLRXPQIDGLELIRRIRQTAS--ETPIIVLSGAGVMSD 91
Query: 129 IDRCLEDGAEDFIVKPVK 146
L GA D+++KP++
Sbjct: 92 AVEALRLGAADYLIKPLE 109
>pdb|3FFX|A Chain A, Crystal Structure Of Chey Triple Mutant F14e, N59r, E89h
Complexed With Bef3- And Mn2+
pdb|3FFX|B Chain B, Crystal Structure Of Chey Triple Mutant F14e, N59r, E89h
Complexed With Bef3- And Mn2+
Length = 128
Score = 50.8 bits (120), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 35/125 (28%), Positives = 61/125 (48%), Gaps = 26/125 (20%)
Query: 28 EEVHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQ----SINGFDGL 83
+E+ L VDD R+++ LL + L F ++E + ++N
Sbjct: 3 KELKFLVVDDESTMRRIVRNLL--------------KELGFNNVEEAEDGVDALNKLQAG 48
Query: 84 KVDLIITDYCMPGMTGYELLKKIKDSSALREIPVVIMSS----ENILARIDRCLEDGAED 139
+I+D+ MP M G ELLK I+ A+ +PV+++++ ENI+A + GA
Sbjct: 49 GYGFVISDWRMPNMDGLELLKTIRADGAMSALPVLMVTAHAKKENIIA----AAQAGASG 104
Query: 140 FIVKP 144
++VKP
Sbjct: 105 YVVKP 109
>pdb|3OLY|A Chain A, Structural And Functional Effects Of Substitution At
Position T+1 In Chey: Cheya88m-Bef3-Mn Complex
pdb|3OLY|B Chain B, Structural And Functional Effects Of Substitution At
Position T+1 In Chey: Cheya88m-Bef3-Mn Complex
Length = 129
Score = 50.8 bits (120), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 57/121 (47%), Gaps = 18/121 (14%)
Query: 28 EEVHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQ----SINGFDGL 83
+E+ L VDD R+++ LL + L F ++E + ++N
Sbjct: 4 KELKFLVVDDFSTMRRIVRNLL--------------KELGFNNVEEAEDGVDALNKLQAG 49
Query: 84 KVDLIITDYCMPGMTGYELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVK 143
+I+D+ MP M G ELLK I+ A+ +PV++++ E I + GA ++VK
Sbjct: 50 GYGFVISDWNMPNMDGLELLKTIRADGAMSALPVLMVTMEAKKENIIAAAQAGASGYVVK 109
Query: 144 P 144
P
Sbjct: 110 P 110
>pdb|3OLV|A Chain A, Structural And Functional Effects Of Substitution At
Position T+1 In Chey: Cheya88v-Bef3-Mg Complex
pdb|3OLV|B Chain B, Structural And Functional Effects Of Substitution At
Position T+1 In Chey: Cheya88v-Bef3-Mg Complex
Length = 129
Score = 50.4 bits (119), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 57/121 (47%), Gaps = 18/121 (14%)
Query: 28 EEVHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQ----SINGFDGL 83
+E+ L VDD R+++ LL + L F ++E + ++N
Sbjct: 4 KELKFLVVDDFSTMRRIVRNLL--------------KELGFNNVEEAEDGVDALNKLQAG 49
Query: 84 KVDLIITDYCMPGMTGYELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVK 143
+I+D+ MP M G ELLK I+ A+ +PV++++ E I + GA ++VK
Sbjct: 50 GYGFVISDWNMPNMDGLELLKTIRADGAMSALPVLMVTVEAKKENIIAAAQAGASGYVVK 109
Query: 144 P 144
P
Sbjct: 110 P 110
>pdb|2JBA|B Chain B, Phob Response Regulator Receiver Domain Constitutively-
Active Double Mutant D53a And Y102c
Length = 127
Score = 50.4 bits (119), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 49/89 (55%), Gaps = 1/89 (1%)
Query: 72 DEEQSINGFDGLKVDLIITDYCMPGMTGYELLKKIKDSSALREIPVVIMSSENILARIDR 131
D + ++N + DLI+ + +PG +G + +K +K S R+IPVV++++ R
Sbjct: 34 DYDSAVNQLNEPWPDLILLAWMLPGGSGIQFIKHLKRESMTRDIPVVMLTARGEEEDRVR 93
Query: 132 CLEDGAEDFIVKPVKLSD-VKRIKDYLTR 159
LE GA+D I KP + V RIK + R
Sbjct: 94 GLETGADDCITKPFSPKELVARIKAVMRR 122
>pdb|1EHC|A Chain A, Structure Of Signal Transduction Protein Chey
Length = 128
Score = 50.4 bits (119), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 48/89 (53%), Gaps = 7/89 (7%)
Query: 63 RRALQFLGLDE-EQSINGFDGLK------VDLIITDYCMPGMTGYELLKKIKDSSALREI 115
R L+ LG + E++ +G D L +I+D+ MP M G ELLK I+ A+ +
Sbjct: 21 RNLLKELGFNNVEEAEDGVDALNKLQAGGYGFVISDWNMPNMDGLELLKTIRADGAMSAL 80
Query: 116 PVVIMSSENILARIDRCLEDGAEDFIVKP 144
PV+++++E I + GA ++VKP
Sbjct: 81 PVLMVTAEAKKENIIAAAQAGASGYVVKP 109
>pdb|1E6K|A Chain A, Two-Component Signal Transduction System D12a Mutant Of
Chey
Length = 130
Score = 50.4 bits (119), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 48/89 (53%), Gaps = 7/89 (7%)
Query: 63 RRALQFLGLDE-EQSINGFDGLK------VDLIITDYCMPGMTGYELLKKIKDSSALREI 115
R L+ LG + E++ +G D L +I+D+ MP M G ELLK I+ A+ +
Sbjct: 23 RNLLKELGFNNVEEAEDGVDALNKLQAGGYGFVISDWNMPNMDGLELLKTIRADGAMSAL 82
Query: 116 PVVIMSSENILARIDRCLEDGAEDFIVKP 144
PV+++++E I + GA ++VKP
Sbjct: 83 PVLMVTAEAKKENIIAAAQAGASGYVVKP 111
>pdb|1E6L|A Chain A, Two-Component Signal Transduction System D13a Mutant Of
Chey
Length = 127
Score = 50.4 bits (119), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 48/89 (53%), Gaps = 7/89 (7%)
Query: 63 RRALQFLGLDE-EQSINGFDGLK------VDLIITDYCMPGMTGYELLKKIKDSSALREI 115
R L+ LG + E++ +G D L +I+D+ MP M G ELLK I+ A+ +
Sbjct: 20 RNLLKELGFNNVEEAEDGVDALNKLQAGGYGFVISDWNMPNMDGLELLKTIRADGAMSAL 79
Query: 116 PVVIMSSENILARIDRCLEDGAEDFIVKP 144
PV+++++E I + GA ++VKP
Sbjct: 80 PVLMVTAEAKKENIIAAAQAGASGYVVKP 108
>pdb|1VLZ|A Chain A, Uncoupled Phosphorylation And Activation In Bacterial
Chemotaxis: The 2.1 Angstrom Structure Of A Threonine To
Isoleucine Mutant At Position 87 Of Chey
pdb|1VLZ|B Chain B, Uncoupled Phosphorylation And Activation In Bacterial
Chemotaxis: The 2.1 Angstrom Structure Of A Threonine To
Isoleucine Mutant At Position 87 Of Chey
Length = 128
Score = 50.4 bits (119), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 57/121 (47%), Gaps = 18/121 (14%)
Query: 28 EEVHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQ----SINGFDGL 83
+E+ L VDD R+++ LL + L F ++E + ++N
Sbjct: 3 KELKFLVVDDFSTMRRIVRNLL--------------KELGFNNVEEAEDGVDALNKLQAG 48
Query: 84 KVDLIITDYCMPGMTGYELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVK 143
+I+D+ MP M G ELLK I+ A+ +PV+++ +E I + GA ++VK
Sbjct: 49 GYGFVISDWNMPNMDGLELLKTIRADGAMSALPVLMVIAEAKKENIIAAAQAGASGYVVK 108
Query: 144 P 144
P
Sbjct: 109 P 109
>pdb|1DC7|A Chain A, Structure Of A Transiently Phosphorylated "switch" In
Bacterial Signal Transduction
Length = 124
Score = 50.4 bits (119), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 53/113 (46%), Gaps = 13/113 (11%)
Query: 32 VLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITD 91
V VDD R V+ER L + T ++G L L D++++D
Sbjct: 6 VWVVDDDSSIRWVLERALAGAGLTCTTFENGNEVLAALASKTP-----------DVLLSD 54
Query: 92 YCMPGMTGYELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKP 144
MPGM G LLK+IK + +PV+IM++ + L + GA D++ KP
Sbjct: 55 IRMPGMDGLALLKQIKQRHPM--LPVIIMTAHSDLDAAVSAYQQGAFDYLPKP 105
>pdb|3RVJ|A Chain A, Structure Of The Chey-Bef3 Complex With Substitutions At
59 And 89: N59d And E89q
pdb|3RVJ|B Chain B, Structure Of The Chey-Bef3 Complex With Substitutions At
59 And 89: N59d And E89q
pdb|3RVK|A Chain A, Structure Of The Chey-Mn2+ Complex With Substitutions At
59 And 89: N59d E89q
Length = 132
Score = 50.4 bits (119), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 32/121 (26%), Positives = 58/121 (47%), Gaps = 18/121 (14%)
Query: 28 EEVHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQ----SINGFDGL 83
+E+ L VDD R+++ LL + L F ++E + ++N
Sbjct: 7 KELKFLVVDDFSTMRRIVRNLL--------------KELGFNNVEEAEDGVDALNKLQAG 52
Query: 84 KVDLIITDYCMPGMTGYELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVK 143
+I+D+ MP M G ELLK I+ A+ +PV++++++ I + GA ++VK
Sbjct: 53 GYGFVISDWDMPNMDGLELLKTIRADGAMSALPVLMVTAQAKKENIIAAAQAGASGYVVK 112
Query: 144 P 144
P
Sbjct: 113 P 113
>pdb|1J56|A Chain A, Minimized Average Structure Of Beryllofluoride-Activated
Ntrc Receiver Domain: Model Structure Incorporating
Active Site Contacts
pdb|1KRX|A Chain A, Solution Structure Of Beryllofluoride-Activated Ntrc
Receiver Domain: Model Structures Incorporating Active
Site Contacts
pdb|1NTR|A Chain A, Solution Structure Of The N-Terminal Receiver Domain Of
Ntrc
Length = 124
Score = 50.1 bits (118), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 53/113 (46%), Gaps = 13/113 (11%)
Query: 32 VLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITD 91
V VDD R V+ER L + T ++G L L D++++D
Sbjct: 6 VWVVDDDSSIRWVLERALAGAGLTCTTFENGNEVLAALASKTP-----------DVLLSD 54
Query: 92 YCMPGMTGYELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKP 144
MPGM G LLK+IK + +PV+IM++ + L + GA D++ KP
Sbjct: 55 IRMPGMDGLALLKQIKQRHPM--LPVIIMTAHSDLDAAVSAYQQGAFDYLPKP 105
>pdb|1KRW|A Chain A, Solution Structure And Backbone Dynamics Of
Beryllofluoride- Activated Ntrc Receiver Domain
Length = 124
Score = 50.1 bits (118), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 35/113 (30%), Positives = 53/113 (46%), Gaps = 13/113 (11%)
Query: 32 VLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITD 91
V VDD R V+ER L + T ++G L L D++++D
Sbjct: 6 VWVVDDDSSIRWVLERALAGAGLTCTTFENGNEVLAALASKTP-----------DVLLSD 54
Query: 92 YCMPGMTGYELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKP 144
MPGM G LLK+IK + +PV+IM++ + L + GA D++ KP
Sbjct: 55 IRMPGMDGLALLKQIKQRHPM--LPVIIMTAHSDLDAAVSAYQQGAFDYLPKP 105
>pdb|6CHY|A Chain A, Structure Of Chemotaxis Protein Chey
pdb|6CHY|B Chain B, Structure Of Chemotaxis Protein Chey
Length = 128
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 33/121 (27%), Positives = 57/121 (47%), Gaps = 18/121 (14%)
Query: 28 EEVHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQ----SINGFDGL 83
+E+ L VDD R+++ LL + L F ++E + ++N
Sbjct: 3 KELKFLVVDDFSTMRRIVRNLL--------------KELGFNNVEEAEDGVDALNKLQAG 48
Query: 84 KVDLIITDYCMPGMTGYELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVK 143
+I+D+ MP M G ELLK I+ A+ +PV+++ +E I + GA ++VK
Sbjct: 49 GYGFVISDWNMPNMDGLELLKTIRADGAMSALPVLMVIAEAKKENIIAAAQAGASGWVVK 108
Query: 144 P 144
P
Sbjct: 109 P 109
>pdb|3RVL|A Chain A, Structure Of The Chey-Bef3 Complex With Substitutions At
59 And 89: N59d And E89r
pdb|3RVL|B Chain B, Structure Of The Chey-Bef3 Complex With Substitutions At
59 And 89: N59d And E89r
pdb|3RVM|A Chain A, Structure Of The Chey-Mn2+ Complex With Substitutions At
59 And 89: N59d And E89r
pdb|3RVR|A Chain A, Structure Of The Cheyn59dE89R MOLYBDATE COMPLEX
pdb|3RVR|B Chain B, Structure Of The Cheyn59dE89R MOLYBDATE COMPLEX
pdb|3RVS|A Chain A, Structure Of The Cheyn59dE89R TUNGSTATE COMPLEX
pdb|3RVS|B Chain B, Structure Of The Cheyn59dE89R TUNGSTATE COMPLEX
Length = 132
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/125 (28%), Positives = 61/125 (48%), Gaps = 26/125 (20%)
Query: 28 EEVHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQ----SINGFDGL 83
+E+ L VDD R+++ LL + L F ++E + ++N
Sbjct: 7 KELKFLVVDDFSTMRRIVRNLL--------------KELGFNNVEEAEDGVDALNKLQAG 52
Query: 84 KVDLIITDYCMPGMTGYELLKKIKDSSALREIPVVIMSS----ENILARIDRCLEDGAED 139
+I+D+ MP M G ELLK I+ A+ +PV+++++ ENI+A + GA
Sbjct: 53 GYGFVISDWDMPNMDGLELLKTIRADGAMSALPVLMVTARAKKENIIA----AAQAGASG 108
Query: 140 FIVKP 144
++VKP
Sbjct: 109 YVVKP 113
>pdb|3HEB|A Chain A, Crystal Structure Of Response Regulator Receiver Domain
From Rhodospirillum Rubrum
pdb|3HEB|B Chain B, Crystal Structure Of Response Regulator Receiver Domain
From Rhodospirillum Rubrum
Length = 152
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 62/122 (50%), Gaps = 4/122 (3%)
Query: 30 VHVLAVDDSFVDRKVIERLLTISSC--KVTAVDSGRRALQFLGLDEEQSINGFDGLKVDL 87
V ++ ++D ++IE+ + + ++ A G AL +L D++ + L
Sbjct: 5 VTIVXIEDDLGHARLIEKNIRRAGVNNEIIAFTDGTSALNYLFGDDKSG--RVSAGRAQL 62
Query: 88 IITDYCMPGMTGYELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVKL 147
++ D +P TG ++LK +K++ R PVVI+++ + I RC + GA +I KPV
Sbjct: 63 VLLDLNLPDXTGIDILKLVKENPHTRRSPVVILTTTDDQREIQRCYDLGANVYITKPVNY 122
Query: 148 SD 149
+
Sbjct: 123 EN 124
>pdb|3RVP|A Chain A, Structure Of The Chey-Bef3 Complex With Substitutions At
59 And 89: N59d And E89k
pdb|3RVP|B Chain B, Structure Of The Chey-Bef3 Complex With Substitutions At
59 And 89: N59d And E89k
pdb|3RVQ|A Chain A, Structure Of The Chey-Mn2+ Complex With Substitutions At
59 And 89: N59d E89k
Length = 132
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/125 (28%), Positives = 61/125 (48%), Gaps = 26/125 (20%)
Query: 28 EEVHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQ----SINGFDGL 83
+E+ L VDD R+++ LL + L F ++E + ++N
Sbjct: 7 KELKFLVVDDFSTMRRIVRNLL--------------KELGFNNVEEAEDGVDALNKLQAG 52
Query: 84 KVDLIITDYCMPGMTGYELLKKIKDSSALREIPVVIMSS----ENILARIDRCLEDGAED 139
+I+D+ MP M G ELLK I+ A+ +PV+++++ ENI+A + GA
Sbjct: 53 GYGFVISDWDMPNMDGLELLKTIRADGAMSALPVLMVTAKAKKENIIA----AAQAGASG 108
Query: 140 FIVKP 144
++VKP
Sbjct: 109 YVVKP 113
>pdb|3RVN|A Chain A, Structure Of The Chey-Bef3 Complex With Substitutions At
59 And 89: N59d And E89y
pdb|3RVN|B Chain B, Structure Of The Chey-Bef3 Complex With Substitutions At
59 And 89: N59d And E89y
pdb|3RVO|A Chain A, Structure Of Chey-Mn2+ Complex With Substitutions At 59
And 89: N59d E89y
Length = 132
Score = 49.7 bits (117), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 35/125 (28%), Positives = 61/125 (48%), Gaps = 26/125 (20%)
Query: 28 EEVHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQ----SINGFDGL 83
+E+ L VDD R+++ LL + L F ++E + ++N
Sbjct: 7 KELKFLVVDDFSTMRRIVRNLL--------------KELGFNNVEEAEDGVDALNKLQAG 52
Query: 84 KVDLIITDYCMPGMTGYELLKKIKDSSALREIPVVIMSS----ENILARIDRCLEDGAED 139
+I+D+ MP M G ELLK I+ A+ +PV+++++ ENI+A + GA
Sbjct: 53 GYGFVISDWDMPNMDGLELLKTIRADGAMSALPVLMVTAYAKKENIIA----AAQAGASG 108
Query: 140 FIVKP 144
++VKP
Sbjct: 109 YVVKP 113
>pdb|1HEY|A Chain A, Investigating The Structural Determinants Of The P21-Like
Triphosphate And Mg2+ Binding Site
Length = 128
Score = 49.7 bits (117), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 47/89 (52%), Gaps = 7/89 (7%)
Query: 63 RRALQFLGL----DEEQSINGFDGLKVD---LIITDYCMPGMTGYELLKKIKDSSALREI 115
R L+ LG D E ++ + L+ +I+D+ MP M G ELLK I+ A+ +
Sbjct: 21 RNLLKELGFNNVEDAEDGVDALNKLQAGGYGFVISDWNMPNMDGLELLKTIRADGAMSAL 80
Query: 116 PVVIMSSENILARIDRCLEDGAEDFIVKP 144
PV+++++E I + GA ++VKP
Sbjct: 81 PVLMVTAEAKKENIIAAAQAGASGYVVKP 109
>pdb|1E6M|A Chain A, Two-Component Signal Transduction System D57a Mutant Of
Chey
Length = 128
Score = 49.7 bits (117), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/121 (26%), Positives = 57/121 (47%), Gaps = 18/121 (14%)
Query: 28 EEVHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQ----SINGFDGL 83
+E+ L VDD R+++ LL + L F ++E + ++N
Sbjct: 3 KELKFLVVDDFSTMRRIVRNLL--------------KELGFNNVEEAEDGVDALNKLQAG 48
Query: 84 KVDLIITDYCMPGMTGYELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVK 143
+I+ + MP M G ELLK I+ A+ +PV+++++E I + GA ++VK
Sbjct: 49 GYGFVISAWNMPNMDGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVK 108
Query: 144 P 144
P
Sbjct: 109 P 109
>pdb|3EQ2|A Chain A, Structure Of Hexagonal Crystal Form Of Pseudomonas
Aeruginosa Rssb
pdb|3EQ2|B Chain B, Structure Of Hexagonal Crystal Form Of Pseudomonas
Aeruginosa Rssb
Length = 394
Score = 49.7 bits (117), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 47/78 (60%), Gaps = 8/78 (10%)
Query: 75 QSINGFDGLKV------DLIITDYCMPGMTGYELLKKIKDSSALREIPVVIMSSENILAR 128
Q++NG GL++ DL+I D P + G EL+++I+ +++ E P++++S + +
Sbjct: 34 QALNGLQGLQIFESEQPDLVICDLRXPQIDGLELIRRIRQTAS--ETPIIVLSGAGVXSD 91
Query: 129 IDRCLEDGAEDFIVKPVK 146
L GA D+++KP++
Sbjct: 92 AVEALRLGAADYLIKPLE 109
>pdb|2JBA|A Chain A, Phob Response Regulator Receiver Domain Constitutively-
Active Double Mutant D53a And Y102c
Length = 127
Score = 49.7 bits (117), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 49/89 (55%), Gaps = 1/89 (1%)
Query: 72 DEEQSINGFDGLKVDLIITDYCMPGMTGYELLKKIKDSSALREIPVVIMSSENILARIDR 131
D + ++N + DLI+ + +PG +G + +K ++ S R+IPVV++++ R
Sbjct: 34 DYDSAVNQLNEPWPDLILLAWMLPGGSGIQFIKHLRRESMTRDIPVVMLTARGEEEDRVR 93
Query: 132 CLEDGAEDFIVKPVKLSD-VKRIKDYLTR 159
LE GA+D I KP + V RIK + R
Sbjct: 94 GLETGADDCITKPFSPKELVARIKAVMRR 122
>pdb|1C4W|A Chain A, 1.9 A Structure Of A-Thiophosphonate Modified Chey D57c
Length = 128
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/121 (26%), Positives = 57/121 (47%), Gaps = 18/121 (14%)
Query: 28 EEVHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQ----SINGFDGL 83
+E+ L VDD R+++ LL + L F ++E + ++N
Sbjct: 3 KELKFLVVDDFSTMRRIVRNLL--------------KELGFNNVEEAEDGVDALNKLQAG 48
Query: 84 KVDLIITDYCMPGMTGYELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVK 143
+I+ + MP M G ELLK I+ A+ +PV+++++E I + GA ++VK
Sbjct: 49 GYGFVISXWNMPNMDGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVK 108
Query: 144 P 144
P
Sbjct: 109 P 109
>pdb|1ZDM|A Chain A, Crystal Structure Of Activated Chey Bound To Xe
pdb|1ZDM|B Chain B, Crystal Structure Of Activated Chey Bound To Xe
Length = 129
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/121 (26%), Positives = 57/121 (47%), Gaps = 18/121 (14%)
Query: 28 EEVHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQ----SINGFDGL 83
+E+ L VDD R+++ LL + L F ++E + ++N
Sbjct: 4 KELKFLVVDDFSTMRRIVRNLL--------------KELGFNNVEEAEDGVDALNKLQAG 49
Query: 84 KVDLIITDYCMPGMTGYELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVK 143
+I+ + MP M G ELLK I+ A+ +PV+++++E I + GA ++VK
Sbjct: 50 GYGFVISXWNMPNMDGLELLKTIRADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVK 109
Query: 144 P 144
P
Sbjct: 110 P 110
>pdb|3I5A|A Chain A, Crystal Structure Of Full-Length Wpsr From Pseudomonas
Syringae
Length = 334
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 39/147 (26%), Positives = 70/147 (47%), Gaps = 14/147 (9%)
Query: 15 DEIDGFDLSPSDTEEVHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQF-LGLDE 73
D++ D+ SD VL VDD + + + R L +G ++ F D
Sbjct: 2 DDLQADDIKTSDENSAMVLLVDDQAMIGEAVRRGL-----------AGHESIDFHFCADP 50
Query: 74 EQSINGFDGLKVDLIITDYCMPGMTGYELLKKIKDSSALREIPVVIMSSENILARIDRCL 133
Q+I +K +I+ D MPG+ G L+++ + + R+IP++++S++
Sbjct: 51 HQAIAQAVQIKPTVILQDLVMPGLDGLTLVREYRSNPLTRDIPIIVLSTKEDPLIKSAAF 110
Query: 134 EDGAEDFIVK-PVKLSDVKRIKDYLTR 159
GA D++VK P + V RI+ Y +R
Sbjct: 111 AAGANDYLVKLPDNIELVARIR-YHSR 136
>pdb|3T6K|A Chain A, Crystal Structure Of A Hypothetical Response Regulator
(Caur_3799) From Chloroflexus Aurantiacus J-10-Fl At
1.86 A Resolution
pdb|3T6K|B Chain B, Crystal Structure Of A Hypothetical Response Regulator
(Caur_3799) From Chloroflexus Aurantiacus J-10-Fl At
1.86 A Resolution
Length = 136
Score = 48.5 bits (114), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 34/129 (26%), Positives = 64/129 (49%), Gaps = 12/129 (9%)
Query: 32 VLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITD 91
+L VDD + +E +L + +V SG ALQ + + L D +I D
Sbjct: 7 LLIVDDDDTVAEXLELVLRGAGYEVRRAASGEEALQQI----------YKNLP-DALICD 55
Query: 92 YCMPGMTGYELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVKLSD-V 150
+PG+ GY L K+++ + +P++ ++++ ++ E GA D++ KP + + V
Sbjct: 56 VLLPGIDGYTLCKRVRQHPLTKTLPILXLTAQGDISAKIAGFEAGANDYLAKPFEPQELV 115
Query: 151 KRIKDYLTR 159
R+K+ L R
Sbjct: 116 YRVKNILAR 124
>pdb|2ID7|A Chain A, 1.75 A Structure Of T87i Phosphono-Chey
Length = 128
Score = 47.8 bits (112), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 32/121 (26%), Positives = 56/121 (46%), Gaps = 18/121 (14%)
Query: 28 EEVHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQ----SINGFDGL 83
+E+ L VDD R+++ LL + L F ++E + ++N
Sbjct: 3 KELKFLVVDDFSTMRRIVRNLL--------------KELGFNNVEEAEDGVDALNKLQAG 48
Query: 84 KVDLIITDYCMPGMTGYELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVK 143
+I+ + MP M G ELLK I+ A+ +PV+++ +E I + GA ++VK
Sbjct: 49 GYGFVISXWNMPNMDGLELLKTIRADGAMSALPVLMVIAEAKKENIIAAAQAGASGYVVK 108
Query: 144 P 144
P
Sbjct: 109 P 109
>pdb|3DGE|C Chain C, Structure Of A Histidine Kinase-response Regulator Complex
Reveals Insights Into Two-component Signaling And A
Novel Cis- Autophosphorylation Mechanism
pdb|3DGE|D Chain D, Structure Of A Histidine Kinase-response Regulator Complex
Reveals Insights Into Two-component Signaling And A
Novel Cis- Autophosphorylation Mechanism
pdb|3DGF|C Chain C, Structure Of A Histidine Kinase-Response Regulator Complex
Reveals Insights Into Two-Component Signaling And A
Novel Cis- Autophosphorylation Mechanism
Length = 122
Score = 47.8 bits (112), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 37/128 (28%), Positives = 61/128 (47%), Gaps = 12/128 (9%)
Query: 32 VLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITD 91
VL VDDS V RK++ L +V ++G+ AL+ L DLI+ D
Sbjct: 5 VLLVDDSAVLRKIVSFNLKKEGYEVIEAENGQIALEKLS-----------EFTPDLIVLD 53
Query: 92 YCMPGMTGYELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVKLSD-V 150
MP M G+ +LKK+++ + IPV++++++ L GA + KP S +
Sbjct: 54 IMMPVMDGFTVLKKLQEKEEWKRIPVIVLTAKGGEEDESLALSLGARKVMRKPFSPSQFI 113
Query: 151 KRIKDYLT 158
+ +K L
Sbjct: 114 EEVKHLLN 121
>pdb|1K66|A Chain A, Crystal Structure Of The Cyanobacterial Phytochrome
Response Regulator, Rcpb
pdb|1K66|B Chain B, Crystal Structure Of The Cyanobacterial Phytochrome
Response Regulator, Rcpb
Length = 149
Score = 47.8 bits (112), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 36/118 (30%), Positives = 59/118 (50%), Gaps = 3/118 (2%)
Query: 32 VLAVDDSFVDRKVIERLLTISSC--KVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLII 89
+L V+DS D +RLL + +G +AL FL N + +I+
Sbjct: 9 LLVVEDSDEDFSTFQRLLQREGVVNPIYRCITGDQALDFL-YQTGSYCNPDIAPRPAVIL 67
Query: 90 TDYCMPGMTGYELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVKL 147
D +PG G E+L++IK L++IPVVIM++ + I+ C +IVKP+++
Sbjct: 68 LDLNLPGTDGREVLQEIKQDEVLKKIPVVIMTTSSNPKDIEICYSYSISSYIVKPLEI 125
>pdb|1DC8|A Chain A, Structure Of A Transiently Phosphorylated "switch" In
Bacterial Signal Transduction
Length = 124
Score = 47.8 bits (112), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 34/113 (30%), Positives = 52/113 (46%), Gaps = 13/113 (11%)
Query: 32 VLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITD 91
V VDD R V+ER L + T ++G L L D++++
Sbjct: 6 VWVVDDDSSIRWVLERALAGAGLTCTTFENGNEVLAALASKTP-----------DVLLSX 54
Query: 92 YCMPGMTGYELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKP 144
MPGM G LLK+IK + +PV+IM++ + L + GA D++ KP
Sbjct: 55 IRMPGMDGLALLKQIKQRHPM--LPVIIMTAHSDLDAAVSAYQQGAFDYLPKP 105
>pdb|2ID9|A Chain A, 1.85 A Structure Of T87iY106W PHOSPHONO-Chey
pdb|2IDM|A Chain A, 2.00 A Structure Of T87iY106W PHOSPHONO-Chey
Length = 128
Score = 47.8 bits (112), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 32/121 (26%), Positives = 56/121 (46%), Gaps = 18/121 (14%)
Query: 28 EEVHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQ----SINGFDGL 83
+E+ L VDD R+++ LL + L F ++E + ++N
Sbjct: 3 KELKFLVVDDFSTMRRIVRNLL--------------KELGFNNVEEAEDGVDALNKLQAG 48
Query: 84 KVDLIITDYCMPGMTGYELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVK 143
+I+ + MP M G ELLK I+ A+ +PV+++ +E I + GA ++VK
Sbjct: 49 GYGFVISXWNMPNMDGLELLKTIRADGAMSALPVLMVIAEAKKENIIAAAQAGASGWVVK 108
Query: 144 P 144
P
Sbjct: 109 P 109
>pdb|3BRE|A Chain A, Crystal Structure Of P.Aeruginosa Pa3702
pdb|3BRE|B Chain B, Crystal Structure Of P.Aeruginosa Pa3702
Length = 358
Score = 47.4 bits (111), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 49/89 (55%), Gaps = 2/89 (2%)
Query: 72 DEEQSINGFDGLKVDLIITDYCMPGMTGYELLKKIKDSSALREIPVVIMSSENILARIDR 131
D +Q++ + +K +I+ D MPG+ G LL + + A R+IP++++S++
Sbjct: 51 DPQQAVAVANQIKPTVILQDLVMPGVDGLTLLAAYRGNPATRDIPIIVLSTKEEPTVKSA 110
Query: 132 CLEDGAEDFIVK-PVKLSDVKRIKDYLTR 159
GA D++VK P + V RI+ Y +R
Sbjct: 111 AFAAGANDYLVKLPDAIELVARIR-YHSR 138
>pdb|1QKK|A Chain A, Crystal Structure Of The Receiver Domain And Linker Region
Of Dctd From Sinorhizobium Meliloti
Length = 155
Score = 46.6 bits (109), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 58/114 (50%), Gaps = 15/114 (13%)
Query: 32 VLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITD 91
V +DD RK +++ L ++ V++ S AL L D F G+ +I+D
Sbjct: 6 VFLIDDDRDLRKAMQQTLELAGFTVSSFASATEALAGLSAD-------FAGI----VISD 54
Query: 92 YCMPGMTGYELLKKIKDSSAL-REIPVVIMSSENILARIDRCLEDGAEDFIVKP 144
MPGM G L +KI AL ++P+++++ + + ++DGA DFI KP
Sbjct: 55 IRMPGMDGLALFRKIL---ALDPDLPMILVTGHGDIPMAVQAIQDGAYDFIAKP 105
>pdb|1L5Y|A Chain A, Crystal Structure Of Mg2+ / Bef3-bound Receiver Domain Of
Sinorhizobium Meliloti Dctd
pdb|1L5Y|B Chain B, Crystal Structure Of Mg2+ / Bef3-bound Receiver Domain Of
Sinorhizobium Meliloti Dctd
pdb|1L5Z|A Chain A, Crystal Structure Of The E121k Substitution Of The
Receiver Domain Of Sinorhizobium Meliloti Dctd
Length = 155
Score = 46.6 bits (109), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/114 (30%), Positives = 58/114 (50%), Gaps = 15/114 (13%)
Query: 32 VLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITD 91
V +DD RK +++ L ++ V++ S AL L D F G+ +I+D
Sbjct: 6 VFLIDDDRDLRKAMQQTLELAGFTVSSFASATEALAGLSAD-------FAGI----VISD 54
Query: 92 YCMPGMTGYELLKKIKDSSAL-REIPVVIMSSENILARIDRCLEDGAEDFIVKP 144
MPGM G L +KI AL ++P+++++ + + ++DGA DFI KP
Sbjct: 55 IRMPGMDGLALFRKIL---ALDPDLPMILVTGHGDIPMAVQAIQDGAYDFIAKP 105
>pdb|1ZY2|A Chain A, Crystal Structure Of The Phosphorylated Receiver Domain Of
The Transcription Regulator Ntrc1 From Aquifex Aeolicus
pdb|1ZY2|B Chain B, Crystal Structure Of The Phosphorylated Receiver Domain Of
The Transcription Regulator Ntrc1 From Aquifex Aeolicus
Length = 150
Score = 46.6 bits (109), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/122 (25%), Positives = 62/122 (50%), Gaps = 13/122 (10%)
Query: 30 VHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLII 89
++VL ++D V R ++E L++ KV + + G+ A + L E+ N +++
Sbjct: 1 MNVLVIEDDKVFRGLLEEYLSMKGIKVESAERGKEAYKLLS---EKHFN--------VVL 49
Query: 90 TDYCMPGMTGYELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVKLSD 149
+P + G E+LK IK+ S E V++++ + ++ GA DF+ KP L +
Sbjct: 50 LXLLLPDVNGLEILKWIKERSP--ETEVIVITGHGTIKTAVEAMKMGAYDFLTKPCMLEE 107
Query: 150 VK 151
++
Sbjct: 108 IE 109
>pdb|1DCF|A Chain A, Crystal Structure Of The Receiver Domain Of The Ethylene
Receptor Of Arabidopsis Thaliana
Length = 136
Score = 46.2 bits (108), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/123 (25%), Positives = 61/123 (49%), Gaps = 15/123 (12%)
Query: 32 VLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITD 91
VL +D++ V R V + LL C+VT V S L+ + + + ++ D
Sbjct: 10 VLVMDENGVSRMVTKGLLVHLGCEVTTVSSNEECLRVVSHEHK------------VVFMD 57
Query: 92 YCMPGMTGYELLKKI--KDSSALREIPVVIMSSENI-LARIDRCLEDGAEDFIVKPVKLS 148
CMPG+ Y++ +I K + + P+++ S N + ++C+ G + ++KPV L
Sbjct: 58 VCMPGVENYQIALRIHEKFTKQRHQRPLLVALSGNTDKSTKEKCMSFGLDGVLLKPVSLD 117
Query: 149 DVK 151
+++
Sbjct: 118 NIR 120
>pdb|3NHZ|A Chain A, Structure Of N-Terminal Domain Of Mtra
pdb|3NHZ|B Chain B, Structure Of N-Terminal Domain Of Mtra
pdb|3NHZ|C Chain C, Structure Of N-Terminal Domain Of Mtra
pdb|3NHZ|D Chain D, Structure Of N-Terminal Domain Of Mtra
Length = 125
Score = 45.4 bits (106), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 44/75 (58%), Gaps = 3/75 (4%)
Query: 72 DEEQSINGFDGLKVDLIITDYCMPGMTGYELLKKIKDSSALREIPVVIMSSENILARIDR 131
D Q++ L+ DL++ D +PGM G ++ + ++ S +P+V+++++ +
Sbjct: 37 DGTQALTAVRELRPDLVLLDLMLPGMNGIDVCRVLRADSG---VPIVMLTAKTDTVDVVL 93
Query: 132 CLEDGAEDFIVKPVK 146
LE GA+D+I+KP K
Sbjct: 94 GLESGADDYIMKPFK 108
>pdb|3GL9|A Chain A, The Structure Of A Histidine Kinase-Response Regulator
Complex Sheds Light Into Two-Component Signaling And
Reveals A Novel Cis Autophosphorylation Mechanism
pdb|3GL9|B Chain B, The Structure Of A Histidine Kinase-Response Regulator
Complex Sheds Light Into Two-Component Signaling And
Reveals A Novel Cis Autophosphorylation Mechanism
pdb|3GL9|C Chain C, The Structure Of A Histidine Kinase-Response Regulator
Complex Sheds Light Into Two-Component Signaling And
Reveals A Novel Cis Autophosphorylation Mechanism
pdb|3GL9|D Chain D, The Structure Of A Histidine Kinase-Response Regulator
Complex Sheds Light Into Two-Component Signaling And
Reveals A Novel Cis Autophosphorylation Mechanism
Length = 122
Score = 45.1 bits (105), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 36/128 (28%), Positives = 60/128 (46%), Gaps = 12/128 (9%)
Query: 32 VLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITD 91
VL VDDS V RK++ L +V ++G+ AL+ L DLI+
Sbjct: 5 VLLVDDSAVLRKIVSFNLKKEGYEVIEAENGQIALEKLS-----------EFTPDLIVLX 53
Query: 92 YCMPGMTGYELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVKLSD-V 150
MP M G+ +LKK+++ + IPV++++++ L GA + KP S +
Sbjct: 54 IMMPVMDGFTVLKKLQEKEEWKRIPVIVLTAKGGEEDESLALSLGARKVMRKPFSPSQFI 113
Query: 151 KRIKDYLT 158
+ +K L
Sbjct: 114 EEVKHLLN 121
>pdb|1NXO|A Chain A, Micarec Ph7.0
pdb|1NXP|A Chain A, Micarec Ph4.5
pdb|1NXS|A Chain A, Micarec Ph4.9
pdb|1NXV|A Chain A, Micarec Ph 4.2
pdb|1NXW|A Chain A, Micarec Ph 5.1
pdb|1NXX|A Chain A, Micarec Ph 5.5
pdb|2A9O|A Chain A, Crystal Structures Of An Activated Yycf Homologue, The
Essential Response Regulator From S.Pneumoniae In
Complex With Bef3 And The Effect Of Ph On Bef3 Binding,
Possible Phosphate In The Active Site
pdb|2A9P|A Chain A, Medium Resolution Bef3 Bound Rr02-Rec
pdb|2A9Q|A Chain A, Low Resolution Structure Rr02-rec On Bef3 Bound
Length = 120
Score = 44.7 bits (104), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 36/132 (27%), Positives = 69/132 (52%), Gaps = 19/132 (14%)
Query: 31 HVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIIT 90
+L VDD +I+ +T +V +GR AL+ F+ + D+II
Sbjct: 3 KILIVDDEKPISDIIKFNMTKEGYEVVTAFNGREALE-----------QFEAEQPDIIIL 51
Query: 91 DYCMPGMTGYELLKKIKDSSALREIPVVIMSSENILARIDRC--LEDGAEDFIVKPVKLS 148
D +P + G E+ K I+ +S+ +P++++S+++ + D+ LE GA+D++ KP
Sbjct: 52 DLMLPEIDGLEVAKTIRKTSS---VPILMLSAKD--SEFDKVIGLELGADDYVTKPFSNR 106
Query: 149 DVK-RIKDYLTR 159
+++ R+K L R
Sbjct: 107 ELQARVKALLRR 118
>pdb|2OQR|A Chain A, The Structure Of The Response Regulator Regx3 From
Mycobacterium Tuberculosis
Length = 230
Score = 44.3 bits (103), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 54/91 (59%), Gaps = 8/91 (8%)
Query: 72 DEEQSINGFDGLKVDLIITDYCMPGMTGYELLKKIKDSSALREIPVVIMSSENILARIDR 131
D ++ FD D+++ D +PGM+G ++ K+++ S+ +PV+++++ + + ID+
Sbjct: 36 DGPAALAEFDRAGADIVLLDLMLPGMSGTDVCKQLRARSS---VPVIMVTARD--SEIDK 90
Query: 132 C--LEDGAEDFIVKPVKLSD-VKRIKDYLTR 159
LE GA+D++ KP + + RI+ L R
Sbjct: 91 VVGLELGADDYVTKPYSARELIARIRAVLRR 121
>pdb|2ZAY|A Chain A, Crystal Structure Of Response Regulator From
Desulfuromonas Acetoxidans
pdb|2ZAY|B Chain B, Crystal Structure Of Response Regulator From
Desulfuromonas Acetoxidans
Length = 147
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 35/118 (29%), Positives = 56/118 (47%), Gaps = 10/118 (8%)
Query: 55 KVTAVDSGRRALQFLGLDEEQSINGFDGLKV------DLIITDYCMPGMTGYELLKKIKD 108
++ A+ + AL G D Q N + + V LIIT+ MP ++G +L +K
Sbjct: 17 QLPALAASISALSQEGFDIIQCGNAIEAVPVAVKTHPHLIITEANMPKISGMDLFNSLKK 76
Query: 109 SSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPV---KLSD-VKRIKDYLTRDVN 162
+ IPV+ +S + L+ G DFI KPV +LS +KR+ L D++
Sbjct: 77 NPQTASIPVIALSGRATAKEEAQLLDMGFIDFIAKPVNAIRLSARIKRVLKLLYEDLS 134
>pdb|1U8T|A Chain A, Crystal Structure Of Chey D13k Y106w Alone And In Complex
With A Flim Peptide
pdb|1U8T|B Chain B, Crystal Structure Of Chey D13k Y106w Alone And In Complex
With A Flim Peptide
pdb|1U8T|C Chain C, Crystal Structure Of Chey D13k Y106w Alone And In Complex
With A Flim Peptide
pdb|1U8T|D Chain D, Crystal Structure Of Chey D13k Y106w Alone And In Complex
With A Flim Peptide
Length = 128
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 44/89 (49%), Gaps = 7/89 (7%)
Query: 63 RRALQFLGLDE-EQSINGFDGLK------VDLIITDYCMPGMTGYELLKKIKDSSALREI 115
R L+ LG + E++ +G D L +I+D+ P G ELLK I+ A +
Sbjct: 21 RNLLKELGFNNVEEAEDGVDALNKLQAGGYGFVISDWNXPNXDGLELLKTIRADGAXSAL 80
Query: 116 PVVIMSSENILARIDRCLEDGAEDFIVKP 144
PV+ +++E I + GA ++VKP
Sbjct: 81 PVLXVTAEAKKENIIAAAQAGASGWVVKP 109
>pdb|1M5T|A Chain A, Crystal Structure Of The Response Regulator Divk
pdb|1M5U|A Chain A, Crystal Structure Of The Response Regulator Divk.
Structure At Ph 8.0 In The Apo-Form
pdb|1MAV|A Chain A, Crystal Structure Of The Response Regulator Divk At Ph 6.0
In Complex With Mn2+
pdb|1MB0|A Chain A, Crystal Structure Of The Response Regulator Divk At Ph 8.0
In Complex With Mn2+
pdb|1MB3|A Chain A, Crystal Structure Of The Response Regulator Divk At Ph 8.5
In Complex With Mg2+
Length = 124
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/126 (27%), Positives = 58/126 (46%), Gaps = 15/126 (11%)
Query: 32 VLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITD 91
VL V+D+ ++ K+ LL + G AL + K DLI+ D
Sbjct: 4 VLIVEDNELNMKLFHDLLEAQGYETLQTREGLSALSIAREN-----------KPDLILMD 52
Query: 92 YCMPGMTGYELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVK----L 147
+P ++G E+ K +K+ L IPVV +++ + +R E G E +I KP+ L
Sbjct: 53 IQLPEISGLEVTKWLKEDDDLAHIPVVAVTAFAMKGDEERIREGGCEAYISKPISVVHFL 112
Query: 148 SDVKRI 153
+KR+
Sbjct: 113 ETIKRL 118
>pdb|1ZGZ|A Chain A, Crystal Structure Of The Receiver Domain Of Tmao
Respiratory System Response Regulator Torr
pdb|1ZGZ|B Chain B, Crystal Structure Of The Receiver Domain Of Tmao
Respiratory System Response Regulator Torr
pdb|1ZGZ|C Chain C, Crystal Structure Of The Receiver Domain Of Tmao
Respiratory System Response Regulator Torr
pdb|1ZGZ|D Chain D, Crystal Structure Of The Receiver Domain Of Tmao
Respiratory System Response Regulator Torr
Length = 122
Score = 42.7 bits (99), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/134 (28%), Positives = 69/134 (51%), Gaps = 23/134 (17%)
Query: 31 HVLAVDDSFVDRKVIERLLTIS--SCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLI 88
H++ V+D V + ++ T + VTA +G R + + QS VDLI
Sbjct: 4 HIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIX-----QNQS--------VDLI 50
Query: 89 ITDYCMPGMTGYELLKKIKDSSALREIPVVIMSSENILARIDRC--LEDGAEDFIVKPVK 146
+ D +P G L + +++ S + +++++ + RIDR LE GA+D++ KP++
Sbjct: 51 LLDINLPDENGLXLTRALRERST---VGIILVTGRS--DRIDRIVGLEXGADDYVTKPLE 105
Query: 147 LSD-VKRIKDYLTR 159
L + V R+K+ L R
Sbjct: 106 LRELVVRVKNLLWR 119
>pdb|1U0S|Y Chain Y, Chemotaxis Kinase Chea P2 Domain In Complex With Response
Regulator Chey From The Thermophile Thermotoga Maritima
Length = 118
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 62/123 (50%), Gaps = 18/123 (14%)
Query: 31 HVLAVDDSFVDRKVIERLLTISSCKVTA-VDSGRRALQFLGLDEEQSINGFDGLKVDLII 89
VL VDD+ R +++ ++T + +V +GR A++ + LK D++
Sbjct: 3 RVLIVDDAAFMRMMLKDIITKAGYEVAGEATNGREAVE-----------KYKELKPDIVT 51
Query: 90 TDYCMPGMTGYELLKKIK--DSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVKL 147
D MP M G + +K+I D +A +++ S+ A + ++ GA+DFIVKP +
Sbjct: 52 MDITMPEMNGIDAIKEIMKIDPNA----KIIVCSAMGQQAMVIEAIKAGAKDFIVKPFQP 107
Query: 148 SDV 150
S V
Sbjct: 108 SRV 110
>pdb|3TMY|A Chain A, Chey From Thermotoga Maritima (Mn-Iii)
pdb|3TMY|B Chain B, Chey From Thermotoga Maritima (Mn-Iii)
pdb|4TMY|A Chain A, Chey From Thermotoga Maritima (mg-iv)
pdb|4TMY|B Chain B, Chey From Thermotoga Maritima (mg-iv)
pdb|1TMY|A Chain A, Chey From Thermotoga Maritima (Apo-I)
pdb|2TMY|A Chain A, Chey From Thermotoga Maritima (Apo-Ii)
Length = 120
Score = 42.4 bits (98), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/123 (28%), Positives = 62/123 (50%), Gaps = 18/123 (14%)
Query: 31 HVLAVDDSFVDRKVIERLLTISSCKVTA-VDSGRRALQFLGLDEEQSINGFDGLKVDLII 89
VL VDD+ R +++ ++T + +V +GR A++ + LK D++
Sbjct: 4 RVLIVDDAAFMRMMLKDIITKAGYEVAGEATNGREAVE-----------KYKELKPDIVT 52
Query: 90 TDYCMPGMTGYELLKKIK--DSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVKL 147
D MP M G + +K+I D +A +++ S+ A + ++ GA+DFIVKP +
Sbjct: 53 MDITMPEMNGIDAIKEIMKIDPNA----KIIVCSAMGQQAMVIEAIKAGAKDFIVKPFQP 108
Query: 148 SDV 150
S V
Sbjct: 109 SRV 111
>pdb|1NXT|A Chain A, Micarec Ph 4.0
pdb|2A9R|A Chain A, Rr02-Rec Phosphate In The Active Site
Length = 120
Score = 42.0 bits (97), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 35/132 (26%), Positives = 68/132 (51%), Gaps = 19/132 (14%)
Query: 31 HVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIIT 90
+L VDD +I+ +T +V +GR AL+ F+ + D+II
Sbjct: 3 KILIVDDEKPISDIIKFNMTKEGYEVVTAFNGREALE-----------QFEAEQPDIIIL 51
Query: 91 DYCMPGMTGYELLKKIKDSSALREIPVVIMSSENILARIDRC--LEDGAEDFIVKPVKLS 148
+P + G E+ K I+ +S+ +P++++S+++ + D+ LE GA+D++ KP
Sbjct: 52 XLMLPEIDGLEVAKTIRKTSS---VPILMLSAKD--SEFDKVIGLELGADDYVTKPFSNR 106
Query: 149 DVK-RIKDYLTR 159
+++ R+K L R
Sbjct: 107 ELQARVKALLRR 118
>pdb|3T8Y|A Chain A, Crystal Structure Of The Response Regulator Domain Of
Thermotoga Maritima Cheb
pdb|3T8Y|B Chain B, Crystal Structure Of The Response Regulator Domain Of
Thermotoga Maritima Cheb
Length = 164
Score = 41.2 bits (95), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 38/115 (33%), Positives = 56/115 (48%), Gaps = 10/115 (8%)
Query: 30 VHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLII 89
+ VL VDDS R V++ ++ S + V + L+ + E++I LK D+I
Sbjct: 26 IRVLVVDDSAFMRMVLKDIID-SQPDMKVVGFAKDGLEAV----EKAIE----LKPDVIT 76
Query: 90 TDYCMPGMTGYELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKP 144
D MP + G E LK I + R I V ++ E I+ L +GA DFI KP
Sbjct: 77 MDIEMPNLNGIEALKLIMKKAPTRVIMVSSLTEEGAAITIE-ALRNGAVDFITKP 130
>pdb|1YS6|A Chain A, Crystal Structure Of The Response Regulatory Protein Prra
From Mycobacterium Tuberculosis
pdb|1YS6|B Chain B, Crystal Structure Of The Response Regulatory Protein Prra
From Mycobacterium Tuberculosis
pdb|1YS7|A Chain A, Crystal Structure Of The Response Regulator Protein Prra
Comlexed With Mg2+
pdb|1YS7|B Chain B, Crystal Structure Of The Response Regulator Protein Prra
Comlexed With Mg2+
Length = 233
Score = 40.8 bits (94), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 54/103 (52%), Gaps = 9/103 (8%)
Query: 64 RALQFLGLDEEQSINGFDGLKV------DLIITDYCMPGMTGYELLKKIKDSSALREIPV 117
R L+ G + +++G + L+ D I+ D MP + G ++ ++ ++PV
Sbjct: 25 RGLRLSGFEVATAVDGAEALRSATENRPDAIVLDINMPVLDGVSVVTALRAMD--NDVPV 82
Query: 118 VIMSSENILARIDRCLEDGAEDFIVKPVKLSD-VKRIKDYLTR 159
++S+ + + LE GA+D++VKP L++ V R+K L R
Sbjct: 83 CVLSARSSVDDRVAGLEAGADDYLVKPFVLAELVARVKALLRR 125
>pdb|3N53|A Chain A, Crystal Structure Of A Response Regulator Receiver
Modulated Diguanylate Cyclase From Pelobacter
Carbinolicus
pdb|3N53|B Chain B, Crystal Structure Of A Response Regulator Receiver
Modulated Diguanylate Cyclase From Pelobacter
Carbinolicus
Length = 140
Score = 40.8 bits (94), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 22/79 (27%), Positives = 41/79 (51%)
Query: 72 DEEQSINGFDGLKVDLIITDYCMPGMTGYELLKKIKDSSALREIPVVIMSSENILARIDR 131
+E++++ D DL+I D + G L K+K S L+ +P++++ S I
Sbjct: 34 NEKEALEQIDHHHPDLVILDXDIIGENSPNLCLKLKRSKGLKNVPLILLFSSEHKEAIVN 93
Query: 132 CLEDGAEDFIVKPVKLSDV 150
L GA+D++ KP +D+
Sbjct: 94 GLHSGADDYLTKPFNRNDL 112
>pdb|3KHT|A Chain A, Crystal Structure Of Response Regulator From Hahella
Chejuensis
Length = 144
Score = 40.4 bits (93), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 54/114 (47%), Gaps = 13/114 (11%)
Query: 32 VLAVDDSFVDRKVIERLLTIS--SCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLII 89
VL V+D+ D +I R+L C++ VD+G +AL +Q+ K DLII
Sbjct: 8 VLVVEDNPDDIALIRRVLDRKDIHCQLEFVDNGAKAL----YQVQQA-------KYDLII 56
Query: 90 TDYCMPGMTGYELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVK 143
D +P G+E+ ++ A + P+VI++ R +C GA + K
Sbjct: 57 LDIGLPIANGFEVXSAVRKPGANQHTPIVILTDNVSDDRAKQCXAAGASSVVDK 110
>pdb|2JVI|A Chain A, Nmr Solution Structure Of The Hyper-Sporulation Response
Regulator Spo0f Mutant H101a From Bacillus Subtilis
Length = 132
Score = 40.4 bits (93), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 48/101 (47%), Gaps = 9/101 (8%)
Query: 70 GLDEEQSINGFDGLKV------DLIITDYCMPGMTGYELLKKIKDSSALREIPVVIMSSE 123
G Q+ NG L + DL++ D +PGM G E+LK++K I V+IM++
Sbjct: 27 GYQTFQAANGLQALDIVTKERPDLVLLDMKIPGMDGIEILKRMKVID--ENIRVIIMTAY 84
Query: 124 NILARIDRCLEDGAEDFIVKPVKLSDVK-RIKDYLTRDVNL 163
L I E GA KP + +++ +K YL NL
Sbjct: 85 GELDMIQESKELGALTAFAKPFDIDEIRDAVKKYLPLKSNL 125
>pdb|1JLK|A Chain A, Crystal Structure Of The Mn(2+)-Bound Form Of Response
Regulator Rcp1
pdb|1JLK|B Chain B, Crystal Structure Of The Mn(2+)-Bound Form Of Response
Regulator Rcp1
Length = 147
Score = 40.4 bits (93), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 53/95 (55%), Gaps = 6/95 (6%)
Query: 32 VLAVDDSFVDRKVIERLLTISSC--KVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLII 89
+L V+DS D ++++ +L S+ ++ + G A+ FL +Q + + +LI+
Sbjct: 11 ILLVEDSKADSRLVQEVLKTSTIDHELIILRDGLAAMAFL----QQQGEYENSPRPNLIL 66
Query: 90 TDYCMPGMTGYELLKKIKDSSALREIPVVIMSSEN 124
D +P G E+L +IK + L+ IPVV++++ +
Sbjct: 67 LDLNLPKKDGREVLAEIKQNPDLKRIPVVVLTTSH 101
>pdb|2R25|B Chain B, Complex Of Ypd1 And Sln1-R1 With Bound Mg2+ And Bef3-
Length = 133
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/125 (26%), Positives = 60/125 (48%), Gaps = 8/125 (6%)
Query: 30 VHVLAVDDSFVDRKVIERLLTISSCK-VTAVDSGRRALQFLGLDEEQSINGFDGLKVDLI 88
V +L V+D+ V+++VI+R+L + + + G+ A D+ + + G ++I
Sbjct: 3 VKILVVEDNHVNQEVIKRMLNLEGIENIELACDGQEAF-----DKVKELTS-KGENYNMI 56
Query: 89 ITDYCMPGMTGYELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVKLS 148
D MP + G K I+ P+V +++ + I CLE G F+ KP+K
Sbjct: 57 FMDVQMPKVDGLLSTKMIRRDLGYTS-PIVALTAFADDSNIKECLESGMNGFLSKPIKRP 115
Query: 149 DVKRI 153
+K I
Sbjct: 116 KLKTI 120
>pdb|1OXB|B Chain B, Complex Between Ypd1 And Sln1 Response Regulator Domain In
Space Group P2(1)2(1)2(1)
pdb|1OXK|B Chain B, Complex Between Ypd1 And Sln1 Response Regulator Domain In
Space Group P3(2)
pdb|1OXK|D Chain D, Complex Between Ypd1 And Sln1 Response Regulator Domain In
Space Group P3(2)
pdb|1OXK|F Chain F, Complex Between Ypd1 And Sln1 Response Regulator Domain In
Space Group P3(2)
pdb|1OXK|H Chain H, Complex Between Ypd1 And Sln1 Response Regulator Domain In
Space Group P3(2)
pdb|1OXK|J Chain J, Complex Between Ypd1 And Sln1 Response Regulator Domain In
Space Group P3(2)
pdb|1OXK|L Chain L, Complex Between Ypd1 And Sln1 Response Regulator Domain In
Space Group P3(2)
Length = 134
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/125 (26%), Positives = 60/125 (48%), Gaps = 8/125 (6%)
Query: 30 VHVLAVDDSFVDRKVIERLLTISSCK-VTAVDSGRRALQFLGLDEEQSINGFDGLKVDLI 88
V +L V+D+ V+++VI+R+L + + + G+ A D+ + + G ++I
Sbjct: 2 VKILVVEDNHVNQEVIKRMLNLEGIENIELACDGQEAF-----DKVKELTS-KGENYNMI 55
Query: 89 ITDYCMPGMTGYELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVKLS 148
D MP + G K I+ P+V +++ + I CLE G F+ KP+K
Sbjct: 56 FMDVQMPKVDGLLSTKMIRRDLGYTS-PIVALTAFADDSNIKECLESGMNGFLSKPIKRP 114
Query: 149 DVKRI 153
+K I
Sbjct: 115 KLKTI 119
>pdb|1NY5|A Chain A, Crystal Structure Of Sigm54 Activator (Aaa+ Atpase) In The
Inactive State
pdb|1NY5|B Chain B, Crystal Structure Of Sigm54 Activator (Aaa+ Atpase) In The
Inactive State
Length = 387
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 32/122 (26%), Positives = 63/122 (51%), Gaps = 13/122 (10%)
Query: 30 VHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLII 89
++VL ++D V R ++E L++ KV + + G+ A + L E+ N +++
Sbjct: 1 MNVLVIEDDKVFRGLLEEYLSMKGIKVESAERGKEAYKLLS---EKHFN--------VVL 49
Query: 90 TDYCMPGMTGYELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVKLSD 149
D +P + G E+LK IK+ S E V++++ + ++ GA DF+ KP L +
Sbjct: 50 LDLLLPDVNGLEILKWIKERSP--ETEVIVITGHGTIKTAVEAMKMGAYDFLTKPCMLEE 107
Query: 150 VK 151
++
Sbjct: 108 IE 109
>pdb|1SRR|A Chain A, Crystal Structure Of A Phosphatase Resistant Mutant Of
Sporulation Response Regulator Spo0f From Bacillus
Subtilis
pdb|1SRR|B Chain B, Crystal Structure Of A Phosphatase Resistant Mutant Of
Sporulation Response Regulator Spo0f From Bacillus
Subtilis
pdb|1SRR|C Chain C, Crystal Structure Of A Phosphatase Resistant Mutant Of
Sporulation Response Regulator Spo0f From Bacillus
Subtilis
pdb|1PEY|A Chain A, Crystal Structure Of The Response Regulator Spo0f
Complexed With Mn2+
pdb|1PEY|B Chain B, Crystal Structure Of The Response Regulator Spo0f
Complexed With Mn2+
pdb|1PEY|C Chain C, Crystal Structure Of The Response Regulator Spo0f
Complexed With Mn2+
Length = 124
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 46/95 (48%), Gaps = 9/95 (9%)
Query: 70 GLDEEQSINGFDGLKV------DLIITDYCMPGMTGYELLKKIKDSSALREIPVVIMSSE 123
G Q+ NG L + DL++ D +PGM G E+LK++K I V+IM++
Sbjct: 27 GYQTFQAANGLQALDIVTKERPDLVLLDMKIPGMDGIEILKRMKVID--ENIRVIIMTAY 84
Query: 124 NILARIDRCLEDGAEDFIVKPVKLSDVK-RIKDYL 157
L I E GA KP + +++ +K YL
Sbjct: 85 GELDMIQESKELGALTHFAKPFDIDEIRDAVKKYL 119
>pdb|3Q15|C Chain C, Crystal Structure Of Raph Complexed With Spo0f
pdb|3Q15|D Chain D, Crystal Structure Of Raph Complexed With Spo0f
Length = 126
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 47/100 (47%), Gaps = 9/100 (9%)
Query: 70 GLDEEQSINGFDGLKV------DLIITDYCMPGMTGYELLKKIKDSSALREIPVVIMSSE 123
G Q+ NG L + DL++ D +PGM G E+LK++K I V+IM++
Sbjct: 29 GYQTFQAANGLQALDIVTKERPDLVLLDMKIPGMDGIEILKRMKVID--ENIRVIIMTAY 86
Query: 124 NILARIDRCLEDGAEDFIVKPVKLSDVK-RIKDYLTRDVN 162
L I E GA KP + +++ +K YL N
Sbjct: 87 GELDMIQESKELGALTHFAKPFDIDEIRDAVKKYLPLKSN 126
>pdb|1F51|E Chain E, A Transient Interaction Between Two Phosphorelay Proteins
Trapped In A Crystal Lattice Reveals The Mechanism Of
Molecular Recognition And Phosphotransfer In Singal
Transduction
pdb|1F51|F Chain F, A Transient Interaction Between Two Phosphorelay Proteins
Trapped In A Crystal Lattice Reveals The Mechanism Of
Molecular Recognition And Phosphotransfer In Singal
Transduction
pdb|1F51|G Chain G, A Transient Interaction Between Two Phosphorelay Proteins
Trapped In A Crystal Lattice Reveals The Mechanism Of
Molecular Recognition And Phosphotransfer In Singal
Transduction
pdb|1F51|H Chain H, A Transient Interaction Between Two Phosphorelay Proteins
Trapped In A Crystal Lattice Reveals The Mechanism Of
Molecular Recognition And Phosphotransfer In Singal
Transduction
Length = 119
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 46/95 (48%), Gaps = 9/95 (9%)
Query: 70 GLDEEQSINGFDGLKV------DLIITDYCMPGMTGYELLKKIKDSSALREIPVVIMSSE 123
G Q+ NG L + DL++ D +PGM G E+LK++K I V+IM++
Sbjct: 25 GYQTFQAANGLQALDIVTKERPDLVLLDMKIPGMDGIEILKRMKVID--ENIRVIIMTAY 82
Query: 124 NILARIDRCLEDGAEDFIVKPVKLSDVK-RIKDYL 157
L I E GA KP + +++ +K YL
Sbjct: 83 GELDMIQESKELGALTHFAKPFDIDEIRDAVKKYL 117
>pdb|1PUX|A Chain A, Nmr Solution Structure Of Bef3-Activated Spo0f, 20
Conformers
pdb|1FSP|A Chain A, Nmr Solution Structure Of Bacillus Subtilis Spo0f Protein,
20 Structures
pdb|1NAT|A Chain A, Crystal Structure Of Spoof From Bacillus Subtilis
pdb|2FSP|A Chain A, Nmr Solution Structure Of Bacillus Subtilis Spo0f Protein,
Minimized Average Structure
Length = 124
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/95 (31%), Positives = 46/95 (48%), Gaps = 9/95 (9%)
Query: 70 GLDEEQSINGFDGLKV------DLIITDYCMPGMTGYELLKKIKDSSALREIPVVIMSSE 123
G Q+ NG L + DL++ D +PGM G E+LK++K I V+IM++
Sbjct: 27 GYQTFQAANGLQALDIVTKERPDLVLLDMKIPGMDGIEILKRMKVID--ENIRVIIMTAY 84
Query: 124 NILARIDRCLEDGAEDFIVKPVKLSDVK-RIKDYL 157
L I E GA KP + +++ +K YL
Sbjct: 85 GELDMIQESKELGALTHFAKPFDIDEIRDAVKKYL 119
>pdb|3CG4|A Chain A, Crystal Structure Of Response Regulator Receiver Domain
Protein (Chey- Like) From Methanospirillum Hungatei Jf-1
Length = 142
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/138 (24%), Positives = 62/138 (44%), Gaps = 13/138 (9%)
Query: 32 VLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITD 91
V VDD R ++ +L+ + + + DSG + + L GF G+ ++ D
Sbjct: 10 VXIVDDDAHVRIAVKTILSDAGFHIISADSGGQCIDLLK-------KGFSGV----VLLD 58
Query: 92 YCMPGMTGYELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVKLSDVK 151
PG G++ ++ I D+S + I +V ++++N L++ D+I KP D+
Sbjct: 59 IXXPGXDGWDTIRAILDNSLEQGIAIVXLTAKNAPDAKXIGLQEYVVDYITKPFDNEDLI 118
Query: 152 RIKDYLTRDV--NLGNEG 167
+ V GNEG
Sbjct: 119 EKTTFFXGFVRNQTGNEG 136
>pdb|3Q9S|A Chain A, Crystal Structure Of Rra(1-215) From Deinococcus
Radiodurans
Length = 249
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 39/59 (66%), Gaps = 3/59 (5%)
Query: 86 DLIITDYCMPGMTGYELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKP 144
DLI+ D +P G +++++++ +SAL P++++++ + + R L GA+D+++KP
Sbjct: 83 DLILLDLGLPDFDGGDVVQRLRKNSAL---PIIVLTARDTVEEKVRLLGLGADDYLIKP 138
>pdb|1K68|A Chain A, Crystal Structure Of The Phosphorylated Cyanobacterial
Phytochrome Response Regulator Rcpa
pdb|1K68|B Chain B, Crystal Structure Of The Phosphorylated Cyanobacterial
Phytochrome Response Regulator Rcpa
Length = 140
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/93 (29%), Positives = 49/93 (52%), Gaps = 6/93 (6%)
Query: 32 VLAVDDSFVDRKVIERLLTISSC--KVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLII 89
+ V+D+ D ++I+ L S+ +V V G A+ +L + E + + + DLI+
Sbjct: 5 IFLVEDNKADIRLIQEALANSTVPHEVVTVRDGMEAMAYLRQEGEYA----NASRPDLIL 60
Query: 90 TDYCMPGMTGYELLKKIKDSSALREIPVVIMSS 122
+P G E+L +IK L+ IPVV++S+
Sbjct: 61 LXLNLPKKDGREVLAEIKSDPTLKRIPVVVLST 93
>pdb|1I3C|A Chain A, Response Regulator For Cyanobacterial Phytochrome, Rcp1
pdb|1I3C|B Chain B, Response Regulator For Cyanobacterial Phytochrome, Rcp1
Length = 149
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/95 (27%), Positives = 52/95 (54%), Gaps = 6/95 (6%)
Query: 32 VLAVDDSFVDRKVIERLLTISSC--KVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLII 89
+L V+DS D ++++ +L S+ ++ + G A FL +Q + + +LI+
Sbjct: 11 ILLVEDSKADSRLVQEVLKTSTIDHELIILRDGLAAXAFL----QQQGEYENSPRPNLIL 66
Query: 90 TDYCMPGMTGYELLKKIKDSSALREIPVVIMSSEN 124
D +P G E+L +IK + L+ IPVV++++ +
Sbjct: 67 LDLNLPKKDGREVLAEIKQNPDLKRIPVVVLTTSH 101
>pdb|1DBW|A Chain A, Crystal Structure Of Fixj-N
pdb|1DBW|B Chain B, Crystal Structure Of Fixj-N
pdb|1DCK|A Chain A, Structure Of Unphosphorylated Fixj-N Complexed With Mn2+
pdb|1DCK|B Chain B, Structure Of Unphosphorylated Fixj-N Complexed With Mn2+
pdb|1DCM|A Chain A, Structure Of Unphosphorylated Fixj-N With An Atypical
Conformer (Monomer A)
pdb|1DCM|B Chain B, Structure Of Unphosphorylated Fixj-N With An Atypical
Conformer (Monomer A)
Length = 126
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 60/133 (45%), Gaps = 19/133 (14%)
Query: 30 VHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLII 89
VH+ VDD RK + +LT++ V S L F NG +++
Sbjct: 6 VHI--VDDEEPVRKSLAFMLTMNGFAVKMHQSAEAFLAF----APDVRNG-------VLV 52
Query: 90 TDYCMPGMTGYELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKP----V 145
TD MP M+G ELL+ + D IP ++++ + ++ GA DFI KP V
Sbjct: 53 TDLRMPDMSGVELLRNLGDLKI--NIPSIVITGHGDVPMAVEAMKAGAVDFIEKPFEDTV 110
Query: 146 KLSDVKRIKDYLT 158
+ ++R ++L
Sbjct: 111 IIEAIERASEHLV 123
>pdb|3JTE|A Chain A, Crystal Structure Of Response Regulator Receiver Domain
Protein From Clostridium Thermocellum
Length = 143
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 30/119 (25%), Positives = 59/119 (49%), Gaps = 11/119 (9%)
Query: 32 VLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITD 91
+L +DD + I+ LL I +V S L+ ++ N +D++ITD
Sbjct: 6 ILVIDDESTILQNIKFLLEIDGNEVLTASSSTEGLRIF----TENCNS-----IDVVITD 56
Query: 92 YCMPGMTGYELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVKLSDV 150
MP ++G ++L++IK + + V+I++ L +++GA +++ KPV D+
Sbjct: 57 MKMPKLSGMDILREIKKITP--HMAVIILTGHGDLDNAILAMKEGAFEYLRKPVTAQDL 113
>pdb|1YIO|A Chain A, Crystallographic Structure Of Response Regulator Styr From
Pseudomonas Fluorescens
pdb|1ZN2|A Chain A, Low Resolution Structure Of Response Regulator Styr
Length = 208
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 50/93 (53%), Gaps = 10/93 (10%)
Query: 88 IITDYCMPGMTGYELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVKL 147
++ D MPGM+G EL +++ S IP+V +++ + R ++ GA +F+ KP
Sbjct: 52 LVLDMRMPGMSGIELQEQLTAISD--GIPIVFITAHGDIPMTVRAMKAGAIEFLPKPF-- 107
Query: 148 SDVKRIKDYLTRDVNLGNEGRGINKRKARESCD 180
+ + + D + + + L E +R+ARE+ D
Sbjct: 108 -EEQALLDAIEQGLQLNAE-----RRQARETQD 134
>pdb|2JVJ|A Chain A, Nmr Solution Structure Of The Hyper-Sporulation Response
Regulator Spo0f Mutant I90a From Bacillus Subtilis
Length = 132
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 47/101 (46%), Gaps = 9/101 (8%)
Query: 70 GLDEEQSINGFDGLKV------DLIITDYCMPGMTGYELLKKIKDSSALREIPVVIMSSE 123
G Q+ NG L + DL++ D +PGM G E+LK++K I V+IM++
Sbjct: 27 GYQTFQAANGLQALDIVTKERPDLVLLDMKIPGMDGIEILKRMKVID--ENIRVIIMTAY 84
Query: 124 NILARIDRCLEDGAEDFIVKPVKLSDVK-RIKDYLTRDVNL 163
L E GA KP + +++ +K YL NL
Sbjct: 85 GELDMAQESKELGALTHFAKPFDIDEIRDAVKKYLPLKSNL 125
>pdb|2JVK|A Chain A, Nmr Solution Structure Of The Hyper-Sporulation Response
Regulator Spo0f Mutant L66a From Bacillus Subtilis
Length = 132
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 47/101 (46%), Gaps = 9/101 (8%)
Query: 70 GLDEEQSINGFDGLKV------DLIITDYCMPGMTGYELLKKIKDSSALREIPVVIMSSE 123
G Q+ NG L + DL++ D +PGM G E+ K++K I V+IM++
Sbjct: 27 GYQTFQAANGLQALDIVTKERPDLVLLDMKIPGMDGIEIAKRMKVID--ENIRVIIMTAY 84
Query: 124 NILARIDRCLEDGAEDFIVKPVKLSDVK-RIKDYLTRDVNL 163
L I E GA KP + +++ +K YL NL
Sbjct: 85 GELDMIQESKELGALTHFAKPFDIDEIRDAVKKYLPLKSNL 125
>pdb|1ZH2|A Chain A, Crystal Structure Of The Calcium-Bound Receiver Domain Of
Kdp Potassium Transport System Response Regulator Kdpe
pdb|1ZH2|B Chain B, Crystal Structure Of The Calcium-Bound Receiver Domain Of
Kdp Potassium Transport System Response Regulator Kdpe
pdb|1ZH4|A Chain A, Crystal Structure Of The Mg+2/bef3-bound Receiver Domain
Of Kdp Potassium Transport System Response Regulator
Kdpe
pdb|1ZH4|B Chain B, Crystal Structure Of The Mg+2/bef3-bound Receiver Domain
Of Kdp Potassium Transport System Response Regulator
Kdpe
Length = 121
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 45/77 (58%), Gaps = 4/77 (5%)
Query: 84 KVDLIITDYCMPGMTGYELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVK 143
K DLII D +P G E ++ ++ SA +PV+++S+ + + L+ GA+D++ K
Sbjct: 45 KPDLIILDLGLPDGDGIEFIRDLRQWSA---VPVIVLSARSEESDKIAALDAGADDYLSK 101
Query: 144 PVKLSDVK-RIKDYLTR 159
P + +++ R++ L R
Sbjct: 102 PFGIGELQARLRVALRR 118
>pdb|3R0J|A Chain A, Structure Of Phop From Mycobacterium Tuberculosis
pdb|3R0J|B Chain B, Structure Of Phop From Mycobacterium Tuberculosis
Length = 250
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/130 (25%), Positives = 59/130 (45%), Gaps = 25/130 (19%)
Query: 27 TEEVHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGL--- 83
T E VL VDD + ++E LL++S L+F G + + NG L
Sbjct: 21 TPEARVLVVDD---EANIVE-LLSVS-------------LKFQGFEVYTATNGAQALDRA 63
Query: 84 ---KVDLIITDYCMPGMTGYELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDF 140
+ D +I D PG G+ +L++++ + P + +++ + L L G +D+
Sbjct: 64 RETRPDAVILDVXXPGXDGFGVLRRLRADGI--DAPALFLTARDSLQDKIAGLTLGGDDY 121
Query: 141 IVKPVKLSDV 150
+ KP L +V
Sbjct: 122 VTKPFSLEEV 131
>pdb|3EUL|A Chain A, Structure Of The Signal Receiver Domain Of The Putative
Response Regulator Narl From Mycobacterium Tuberculosis
pdb|3EUL|B Chain B, Structure Of The Signal Receiver Domain Of The Putative
Response Regulator Narl From Mycobacterium Tuberculosis
pdb|3EUL|C Chain C, Structure Of The Signal Receiver Domain Of The Putative
Response Regulator Narl From Mycobacterium Tuberculosis
pdb|3EUL|D Chain D, Structure Of The Signal Receiver Domain Of The Putative
Response Regulator Narl From Mycobacterium Tuberculosis
Length = 152
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/126 (26%), Positives = 60/126 (47%), Gaps = 19/126 (15%)
Query: 22 LSPSDTEEVHVLAVDDSFVDRKVIERLLTISSCK--VTAVDSGRRALQFLGLDEEQSING 79
+S E+V V+ DD + R+ + R L++S V D G AL+ +
Sbjct: 8 MSNPQPEKVRVVVGDDHPLFREGVVRALSLSGSVNVVGEADDGAAALELIKAHLP----- 62
Query: 80 FDGLKVDLIITDYCMPGMTGYELLKKIKDSSALREIP--VVIMSSENILARIDRCLEDGA 137
D+ + DY MPGM G ++ ++ E+P V+++S+ + A + + L+ GA
Sbjct: 63 ------DVALLDYRMPGMDGAQVAAAVRS----YELPTRVLLISAHDEPAIVYQALQQGA 112
Query: 138 EDFIVK 143
F++K
Sbjct: 113 AGFLLK 118
>pdb|3CFY|A Chain A, Crystal Structure Of Signal Receiver Domain Of Putative
Luxo Repressor Protein From Vibrio Parahaemolyticus
Length = 137
Score = 38.5 bits (88), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 34/116 (29%), Positives = 59/116 (50%), Gaps = 17/116 (14%)
Query: 32 VLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITD 91
VL V+DS + ++ + + V++GR A+QF+ E+S K LII D
Sbjct: 7 VLLVEDSTSLAILYKQYVKDEPYDIFHVETGRDAIQFI----ERS-------KPQLIILD 55
Query: 92 YCMPGMTGYELLKKIKDSSALREIP--VVIMSSENILARIDRCLEDGAEDFIVKPV 145
+P M+G ++L I + +IP V+I ++ + ++ GAEDF+ KP+
Sbjct: 56 LKLPDMSGEDVLDWINQN----DIPTSVIIATAHGSVDLAVNLIQKGAEDFLEKPI 107
>pdb|3C3M|A Chain A, Crystal Structure Of The N-Terminal Domain Of Response
Regulator Receiver Protein From Methanoculleus
Marisnigri Jr1
Length = 138
Score = 37.7 bits (86), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 44/91 (48%), Gaps = 5/91 (5%)
Query: 56 VTAVDSG--RRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKKIKDSSALR 113
VT ++ G R F G E+ + + DL++ D G+E L++IK A R
Sbjct: 20 VTXLERGGYRPITAFSG---EECLEALNATPPDLVLLDIXXEPXDGWETLERIKTDPATR 76
Query: 114 EIPVVIMSSENILARIDRCLEDGAEDFIVKP 144
+IPV+ ++++ + ED+I+KP
Sbjct: 77 DIPVLXLTAKPLTPEEANEYGSYIEDYILKP 107
>pdb|2ZWM|A Chain A, Crystal Structure Of Yycf Receiver Domain From Bacillus
Subtilis
pdb|2ZWM|B Chain B, Crystal Structure Of Yycf Receiver Domain From Bacillus
Subtilis
Length = 130
Score = 37.4 bits (85), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 24/95 (25%), Positives = 55/95 (57%), Gaps = 8/95 (8%)
Query: 72 DEEQSINGFDGLKVDLIITDYCMPGMTGYELLKKIKDSSALREIPVVIMSSENILARIDR 131
D +++ + L+ DLI+ D +P G E+ ++++ ++P++++++++ + ID+
Sbjct: 34 DGNEAVEMVEELQPDLILLDIMLPNKDGVEVCREVRKKY---DMPIIMLTAKD--SEIDK 88
Query: 132 C--LEDGAEDFIVKPVKLSD-VKRIKDYLTRDVNL 163
LE GA+D++ KP + + R+K L R + L
Sbjct: 89 VIGLEIGADDYVTKPFSTRELLARVKANLRRQLTL 123
>pdb|2FTK|E Chain E, Berylloflouride Spo0f Complex With Spo0b
pdb|2FTK|F Chain F, Berylloflouride Spo0f Complex With Spo0b
pdb|2FTK|G Chain G, Berylloflouride Spo0f Complex With Spo0b
pdb|2FTK|H Chain H, Berylloflouride Spo0f Complex With Spo0b
Length = 124
Score = 37.4 bits (85), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 46/100 (46%), Gaps = 9/100 (9%)
Query: 70 GLDEEQSINGFDGLKV------DLIITDYCMPGMTGYELLKKIKDSSALREIPVVIMSSE 123
G Q+ NG L + DL++ +PGM G E+LK++K I V+IM++
Sbjct: 27 GYQTFQAANGLQALDIVTKERPDLVLLXMKIPGMDGIEILKRMKVID--ENIRVIIMTAY 84
Query: 124 NILARIDRCLEDGAEDFIVKPVKLSDVK-RIKDYLTRDVN 162
L I E GA KP + +++ +K YL N
Sbjct: 85 GELDMIQESKELGALTHFAKPFDIDEIRDAVKKYLPLKSN 124
>pdb|1XHE|A Chain A, Crystal Structure Of The Receiver Domain Of Redox Response
Regulator Arca
pdb|1XHE|B Chain B, Crystal Structure Of The Receiver Domain Of Redox Response
Regulator Arca
Length = 123
Score = 37.0 bits (84), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 32/132 (24%), Positives = 60/132 (45%), Gaps = 19/132 (14%)
Query: 31 HVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIIT 90
H+L V+D V R ++ + V G Q L E IN L+I
Sbjct: 5 HILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQILS---EYDIN--------LVIM 53
Query: 91 DYCMPGMTGYELLKKIKDSSALREIPVVIMSSENILARIDRC--LEDGAEDFIVKPVKLS 148
D +PG G L +++++ + + ++ ++ + +D+ LE GA+D+I KP
Sbjct: 54 DINLPGKNGLLLARELREQA---NVALMFLTGRD--NEVDKILGLEIGADDYITKPFNPR 108
Query: 149 DVK-RIKDYLTR 159
++ R ++ L+R
Sbjct: 109 ELTIRARNLLSR 120
>pdb|1XHF|A Chain A, Crystal Structure Of The Bef3-Activated Receiver Domain Of
Redox Response Regulator Arca
pdb|1XHF|B Chain B, Crystal Structure Of The Bef3-Activated Receiver Domain Of
Redox Response Regulator Arca
Length = 123
Score = 36.6 bits (83), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 32/132 (24%), Positives = 59/132 (44%), Gaps = 19/132 (14%)
Query: 31 HVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIIT 90
H+L V+D V R ++ + V G Q L E IN L+I
Sbjct: 5 HILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEXHQILS---EYDIN--------LVIX 53
Query: 91 DYCMPGMTGYELLKKIKDSSALREIPVVIMSSENILARIDRC--LEDGAEDFIVKPVKLS 148
D +PG G L +++++ + + + ++ + +D+ LE GA+D+I KP
Sbjct: 54 DINLPGKNGLLLARELREQA---NVALXFLTGRD--NEVDKILGLEIGADDYITKPFNPR 108
Query: 149 DVK-RIKDYLTR 159
++ R ++ L+R
Sbjct: 109 ELTIRARNLLSR 120
>pdb|1D5W|A Chain A, Phosphorylated Fixj Receiver Domain
pdb|1D5W|B Chain B, Phosphorylated Fixj Receiver Domain
pdb|1D5W|C Chain C, Phosphorylated Fixj Receiver Domain
Length = 126
Score = 36.6 bits (83), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 62/133 (46%), Gaps = 19/133 (14%)
Query: 30 VHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLII 89
VH+ VDD RK + +LT++ AV + A FL + NG +++
Sbjct: 6 VHI--VDDEEPVRKSLAFMLTMNGF---AVKMHQSAEAFLAFAPDVR-NG-------VLV 52
Query: 90 TDYCMPGMTGYELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKP----V 145
T MP M+G ELL+ + D IP ++++ + ++ GA DFI KP V
Sbjct: 53 TXLRMPDMSGVELLRNLGDLKI--NIPSIVITGHGDVPMAVEAMKAGAVDFIEKPFEDTV 110
Query: 146 KLSDVKRIKDYLT 158
+ ++R ++L
Sbjct: 111 IIEAIERASEHLV 123
>pdb|1A2O|A Chain A, Structural Basis For Methylesterase Cheb Regulation By A
Phosphorylation-Activated Domain
pdb|1A2O|B Chain B, Structural Basis For Methylesterase Cheb Regulation By A
Phosphorylation-Activated Domain
Length = 349
Score = 36.6 bits (83), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 40/125 (32%), Positives = 59/125 (47%), Gaps = 28/125 (22%)
Query: 29 EVHVLAVDDSFVDRKVIERLLTISS---CKVTAVDSGRRALQFLGLDEEQSINGFDGLKV 85
++ VL+VDDS + R+++ ++ S TA D L I F+
Sbjct: 3 KIRVLSVDDSALMRQIMTEIINSHSDMEMVATAPDP---------LVARDLIKKFNP--- 50
Query: 86 DLIITDYCMPGMTGYELLKKIKDSSALREIPVVIMSS------ENILARIDRCLEDGAED 139
D++ D MP M G + L+K+ LR +PVV++SS E L R LE GA D
Sbjct: 51 DVLTLDVEMPRMDGLDFLEKLMR---LRPMPVVMVSSLTGKGSEVTL----RALELGAID 103
Query: 140 FIVKP 144
F+ KP
Sbjct: 104 FVTKP 108
>pdb|3F6P|A Chain A, Crystal Structure Of Unphosphorelated Receiver Domain Of
Yycf
Length = 120
Score = 35.8 bits (81), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 23/91 (25%), Positives = 53/91 (58%), Gaps = 8/91 (8%)
Query: 72 DEEQSINGFDGLKVDLIITDYCMPGMTGYELLKKIKDSSALREIPVVIMSSENILARIDR 131
D +++ + L+ DLI+ D +P G E+ ++++ ++P++++++++ + ID+
Sbjct: 34 DGNEAVEMVEELQPDLILLDIMLPNKDGVEVCREVRKKY---DMPIIMLTAKD--SEIDK 88
Query: 132 C--LEDGAEDFIVKPVKLSD-VKRIKDYLTR 159
LE GA+D++ KP + + R+K L R
Sbjct: 89 VIGLEIGADDYVTKPFSTRELLARVKANLRR 119
>pdb|4EUK|A Chain A, Crystal Structure
Length = 153
Score = 35.8 bits (81), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 21/110 (19%), Positives = 45/110 (40%), Gaps = 27/110 (24%)
Query: 75 QSINGFDGLKVDLIITDYCMP---GMTGYELLKKIKDSSALR------------------ 113
++I + DL++ D CMP G+ L++ +++
Sbjct: 43 EAITAINSSSYDLVLMDVCMPVLDGLKATRLIRSYEETGNWNAAIEAGVDISTSENEQVC 102
Query: 114 -----EIPVVIMSSENILARIDRCLEDGAEDFIVKPVKLSDVKR-IKDYL 157
+P++ M++ + + C +G + FI KPV L ++ ++ YL
Sbjct: 103 MRPTNRLPIIAMTANTLAESSEECYANGMDSFISKPVTLQKLRECLQQYL 152
>pdb|3CNB|A Chain A, Crystal Structure Of Signal Receiver Domain Of Dna Binding
Response Regulator Protein (Merr) From Colwellia
Psychrerythraea 34h
pdb|3CNB|B Chain B, Crystal Structure Of Signal Receiver Domain Of Dna Binding
Response Regulator Protein (Merr) From Colwellia
Psychrerythraea 34h
pdb|3CNB|C Chain C, Crystal Structure Of Signal Receiver Domain Of Dna Binding
Response Regulator Protein (Merr) From Colwellia
Psychrerythraea 34h
Length = 143
Score = 35.8 bits (81), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 25/98 (25%), Positives = 44/98 (44%), Gaps = 6/98 (6%)
Query: 76 SINGFDG------LKVDLIITDYCMPGMTGYELLKKIKDSSALREIPVVIMSSENILARI 129
+ N FD +K D+++ D M GM G+ + +IK + A I V+ M+ +
Sbjct: 40 AYNPFDAGDLLHTVKPDVVMLDLMMVGMDGFSICHRIKSTPATANIIVIAMTGALTDDNV 99
Query: 130 DRCLEDGAEDFIVKPVKLSDVKRIKDYLTRDVNLGNEG 167
R + GAE KP+ + +++ L +EG
Sbjct: 100 SRIVALGAETCFGKPLNFTLLEKTIKQLVEQKKATSEG 137
>pdb|3NHM|A Chain A, Crystal Structure Of A Response Regulator From Myxococcus
Xanthus
pdb|3NHM|B Chain B, Crystal Structure Of A Response Regulator From Myxococcus
Xanthus
Length = 133
Score = 35.0 bits (79), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 33/117 (28%), Positives = 53/117 (45%), Gaps = 17/117 (14%)
Query: 32 VLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITD 91
VL V++S+ R+ + LL+ TA D G LQ Q++ D++I+D
Sbjct: 7 VLIVENSWTXRETLRLLLSGEFDCTTAAD-GASGLQ-------QAL----AHPPDVLISD 54
Query: 92 YCMPGMTGYELLKKIKDSSALREIPVVIMS--SENILARIDRCLEDGAEDFIVKPVK 146
G GY L + L+ IPV+ +S + D+ + D ++VKPVK
Sbjct: 55 VNXDGXDGYALCGHFRSEPTLKHIPVIFVSGYAPRTEGPADQPVPDA---YLVKPVK 108
>pdb|3LTE|A Chain A, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|B Chain B, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|C Chain C, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|D Chain D, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|E Chain E, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|F Chain F, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|G Chain G, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|H Chain H, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|I Chain I, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|J Chain J, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|K Chain K, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|L Chain L, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|M Chain M, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|N Chain N, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|O Chain O, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|P Chain P, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|Q Chain Q, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|R Chain R, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|S Chain S, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|T Chain T, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|U Chain U, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|V Chain V, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|W Chain W, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
pdb|3LTE|X Chain X, Crystal Structure Of Response Regulator (Signal Receiver
Domain) From Bermanella Marisrubri
Length = 132
Score = 35.0 bits (79), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 27/119 (22%), Positives = 57/119 (47%), Gaps = 24/119 (20%)
Query: 32 VLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFD-GLKVD---- 86
+L VDD IER+L +V E + NGFD G+K+
Sbjct: 9 ILVVDDDQAMAAAIERVLKRDHWQV-----------------EIAHNGFDAGIKLSTFEP 51
Query: 87 -LIITDYCMPGMTGYELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKP 144
++ D MP + G ++++ ++ + + ++++S + A++ + + +GA+D++ KP
Sbjct: 52 AIMTLDLSMPKLDGLDVIRSLRQNKVANQPKILVVSGLD-KAKLQQAVTEGADDYLEKP 109
>pdb|3NNN|A Chain A, Bef3 Activated Drrd Receiver Domain
pdb|3NNN|B Chain B, Bef3 Activated Drrd Receiver Domain
Length = 122
Score = 34.7 bits (78), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 44/75 (58%), Gaps = 3/75 (4%)
Query: 86 DLIITDYCMPGMTGYELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPV 145
D++I D +P G+E+LK +++S PV+++++ + + + L GA+D++ KP
Sbjct: 48 DVVILDIMLPVHDGWEILKSMRESGV--NTPVLMLTALSDVEYRVKGLNMGADDYLPKPF 105
Query: 146 KLSD-VKRIKDYLTR 159
L + + R++ + R
Sbjct: 106 DLRELIARVRALIRR 120
>pdb|2NT4|A Chain A, Receiver Domain From Myxococcus Xanthus Social Motility
Prot (H92f Mutant)
Length = 127
Score = 34.3 bits (77), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
Query: 96 GMTGYELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPV 145
G GY + K+K L+ +P+VI+ + + A+ R L+ A++++ KPV
Sbjct: 62 GQNGYLICGKLKKDDDLKNVPIVIIGNPDGFAQF-RKLKAHADEYVAKPV 110
>pdb|1S8N|A Chain A, Crystal Structure Of Rv1626 From Mycobacterium
Tuberculosis
pdb|1SD5|A Chain A, Crystal Structure Of Rv1626
Length = 205
Score = 34.3 bits (77), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 44/79 (55%), Gaps = 3/79 (3%)
Query: 72 DEEQSINGFDGLKVDLIITDYCMPGMTGYELLKKIKDSSALREIPVVIMSSENILARIDR 131
D ++++ + K DL+I D MP G + +I ++ R P+V++++ + ++R
Sbjct: 46 DGQEAVELAELHKPDLVIMDVKMPRRDGIDAASEI---ASKRIAPIVVLTAFSQRDLVER 102
Query: 132 CLEDGAEDFIVKPVKLSDV 150
+ GA ++VKP +SD+
Sbjct: 103 ARDAGAMAYLVKPFSISDL 121
>pdb|2GKG|A Chain A, Receiver Domain From Myxococcus Xanthus Social Motility
Prot
pdb|2I6F|A Chain A, Receiver Domain From Myxococcus Xanthus Social Motility
Protein Frzs
pdb|2I6F|B Chain B, Receiver Domain From Myxococcus Xanthus Social Motility
Protein Frzs
pdb|2I6F|C Chain C, Receiver Domain From Myxococcus Xanthus Social Motility
Protein Frzs
Length = 127
Score = 33.9 bits (76), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 30/50 (60%), Gaps = 1/50 (2%)
Query: 96 GMTGYELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPV 145
G GY + K+K L+ +P+VI+ + + A+ R L+ A++++ KPV
Sbjct: 62 GQNGYLICGKLKKDDDLKNVPIVIIGNPDGFAQ-HRKLKAHADEYVAKPV 110
>pdb|1KGS|A Chain A, Crystal Structure At 1.50 A Of An OmprPHOB HOMOLOG FROM
THERMOTOGA Maritima
Length = 225
Score = 33.9 bits (76), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 42/75 (56%), Gaps = 3/75 (4%)
Query: 86 DLIITDYCMPGMTGYELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPV 145
D++I D +P G+E+LK ++S PV+ +++ + + + L GA+D++ KP
Sbjct: 48 DVVILDIXLPVHDGWEILKSXRESGV--NTPVLXLTALSDVEYRVKGLNXGADDYLPKPF 105
Query: 146 KLSD-VKRIKDYLTR 159
L + + R++ + R
Sbjct: 106 DLRELIARVRALIRR 120
>pdb|3HDG|A Chain A, Crystal Structure Of The N-Terminal Domain Of An
Uncharacterized Protein (Ws1339) From Wolinella
Succinogenes
pdb|3HDG|B Chain B, Crystal Structure Of The N-Terminal Domain Of An
Uncharacterized Protein (Ws1339) From Wolinella
Succinogenes
pdb|3HDG|D Chain D, Crystal Structure Of The N-Terminal Domain Of An
Uncharacterized Protein (Ws1339) From Wolinella
Succinogenes
pdb|3HDG|E Chain E, Crystal Structure Of The N-Terminal Domain Of An
Uncharacterized Protein (Ws1339) From Wolinella
Succinogenes
Length = 137
Score = 33.5 bits (75), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 32/137 (23%), Positives = 62/137 (45%), Gaps = 16/137 (11%)
Query: 32 VLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITD 91
+L V+D R+ + +++ +V + G + GL D+IITD
Sbjct: 10 ILIVEDDTDAREWLSTIISNHFPEVWSAGDGEEGERLFGLHAP-----------DVIITD 58
Query: 92 YCMPGMTGYELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVKLSDV- 150
P + G E L +IK A + V+++S+ + + +E G F+ KP++ +
Sbjct: 59 IRXPKLGGLEXLDRIKAGGA--KPYVIVISAFSEXKYFIKAIELGVHLFLPKPIEPGRLX 116
Query: 151 KRIKDYLTRDVNLGNEG 167
+ ++D+ R + L EG
Sbjct: 117 ETLEDF--RHIKLAKEG 131
>pdb|1P2F|A Chain A, Crystal Structure Analysis Of Response Regulator Drrb, A
Thermotoga Maritima OmprPHOB HOMOLOG
Length = 220
Score = 33.1 bits (74), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 19/75 (25%), Positives = 42/75 (56%), Gaps = 3/75 (4%)
Query: 87 LIITDYCMPGMTGYELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVK 146
+++ D +P +GYE+ + IK++ E V++++ + + + E GA+D++ KP
Sbjct: 46 VVVLDVXLPDYSGYEICRXIKETRP--ETWVILLTLLSDDESVLKGFEAGADDYVTKPFN 103
Query: 147 LSD-VKRIKDYLTRD 160
+ R+K +L R+
Sbjct: 104 PEILLARVKRFLERE 118
>pdb|2QZJ|A Chain A, Crystal Structure Of A Two-Component Response Regulator
From Clostridium Difficile
pdb|2QZJ|B Chain B, Crystal Structure Of A Two-Component Response Regulator
From Clostridium Difficile
pdb|2QZJ|C Chain C, Crystal Structure Of A Two-Component Response Regulator
From Clostridium Difficile
pdb|2QZJ|D Chain D, Crystal Structure Of A Two-Component Response Regulator
From Clostridium Difficile
pdb|2QZJ|E Chain E, Crystal Structure Of A Two-Component Response Regulator
From Clostridium Difficile
pdb|2QZJ|F Chain F, Crystal Structure Of A Two-Component Response Regulator
From Clostridium Difficile
Length = 136
Score = 33.1 bits (74), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 28/101 (27%), Positives = 49/101 (48%), Gaps = 5/101 (4%)
Query: 69 LGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKKIKDSSALREIPVVIMSSENILAR 128
L + E++I K DLI + + G+ L KKI++ + P+V + N
Sbjct: 33 LAYNCEEAIGKIFSNKYDLIFLEIILSDGDGWTLCKKIRNVTTC---PIVYXTYINEDQS 89
Query: 129 IDRCLEDGAEDFIVKPVKLSDV-KRIKDYLTR-DVNLGNEG 167
I L G +D+++KP+ L + ++K L R + + NEG
Sbjct: 90 ILNALNSGGDDYLIKPLNLEILYAKVKAILRRXNSYVNNEG 130
>pdb|3NNS|A Chain A, Bef3 Activated Drrb Receiver Domain
pdb|3NNS|B Chain B, Bef3 Activated Drrb Receiver Domain
Length = 117
Score = 32.7 bits (73), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 19/74 (25%), Positives = 41/74 (55%), Gaps = 3/74 (4%)
Query: 87 LIITDYCMPGMTGYELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVK 146
+++ D +P +GYE+ + IK++ E V++++ + + + E GA+D++ KP
Sbjct: 46 VVVLDVXLPDYSGYEICRXIKETRP--ETWVILLTLLSDDESVLKGFEAGADDYVTKPFN 103
Query: 147 LSD-VKRIKDYLTR 159
+ R+K +L R
Sbjct: 104 PEILLARVKRFLER 117
>pdb|3CWO|X Chain X, A BetaALPHA-Barrel Built By The Combination Of Fragments
From Different Folds
Length = 237
Score = 32.7 bits (73), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 38/70 (54%), Gaps = 6/70 (8%)
Query: 75 QSINGFDGLKVDLIITDYCMPGMTGYELLKKIK--DSSALREIPVVIMSSENILARIDRC 132
+++ + LK D++ D MP M G + +K+I D +A +++ S+ A +
Sbjct: 16 EAVEKYKELKPDIVTMDITMPEMNGIDAIKEIMKIDPNA----KIIVCSAMGQQAMVIEA 71
Query: 133 LEDGAEDFIV 142
++ GA+DFIV
Sbjct: 72 IKAGAKDFIV 81
>pdb|3NG3|A Chain A, Crystal Structure Of Deoxyribose Phosphate Aldolase From
Mycobacterium Avium 104 In A Schiff Base With An Unknown
Aldehyde
pdb|3NG3|B Chain B, Crystal Structure Of Deoxyribose Phosphate Aldolase From
Mycobacterium Avium 104 In A Schiff Base With An Unknown
Aldehyde
pdb|3NG3|C Chain C, Crystal Structure Of Deoxyribose Phosphate Aldolase From
Mycobacterium Avium 104 In A Schiff Base With An Unknown
Aldehyde
pdb|3NG3|D Chain D, Crystal Structure Of Deoxyribose Phosphate Aldolase From
Mycobacterium Avium 104 In A Schiff Base With An Unknown
Aldehyde
Length = 227
Score = 32.3 bits (72), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 32/62 (51%), Gaps = 9/62 (14%)
Query: 80 FDGLKVDLIITDYCMPGMTGYELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAED 139
DG++ D+ + G G +LK I +SSAL + ++ E+ L R+ R ED D
Sbjct: 109 LDGVRADI----AAVRGAVGGAVLKVIVESSAL-----LALADEHTLVRVCRAAEDAGAD 159
Query: 140 FI 141
F+
Sbjct: 160 FV 161
>pdb|3B2N|A Chain A, Crystal Structure Of Dna-binding Response Regulator, Luxr
Family, From Staphylococcus Aureus
Length = 133
Score = 32.3 bits (72), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 18/51 (35%), Positives = 30/51 (58%), Gaps = 8/51 (15%)
Query: 78 NGFDGLKV------DLIITDYCMPGMTGYELLKKIKDSSALREIPVVIMSS 122
NG D +K+ +++I D MPGMTG E+L +I+ I V+I+++
Sbjct: 37 NGLDAMKLIEEYNPNVVILDIEMPGMTGLEVLAEIRKKHL--NIKVIIVTT 85
>pdb|2NT3|A Chain A, Receiver Domain From Myxococcus Xanthus Social Motility
Protein Frzs (Y102a Mutant)
Length = 127
Score = 31.6 bits (70), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
Query: 96 GMTGYELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPV 145
G GY + K+K L+ +P+VI+ + + A+ R L+ A++ + KPV
Sbjct: 62 GQNGYLICGKLKKDDDLKNVPIVIIGNPDGFAQ-HRKLKAHADEAVAKPV 110
>pdb|2QR3|A Chain A, Crystal Structure Of The N-Terminal Signal Receiver Domain
Of Two- Component System Response Regulator From
Bacteroides Fragilis
Length = 140
Score = 31.6 bits (70), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 32/60 (53%), Gaps = 2/60 (3%)
Query: 85 VDLIITDYCMPGMTGYELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKP 144
+D+ T G G L +IK R++PVV+ ++ + R +++GA DF+VKP
Sbjct: 53 LDMNFTSGINNGNEGLFWLHEIK--RQYRDLPVVLFTAYADIDLAVRGIKEGASDFVVKP 110
>pdb|2PKX|A Chain A, E.Coli Response Regulator Phop Receiver Domain
pdb|2PKX|B Chain B, E.Coli Response Regulator Phop Receiver Domain
pdb|2PL1|A Chain A, Berrylium Fluoride Activated Receiver Domain Of E.Coli
Phop
Length = 121
Score = 31.2 bits (69), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 14/65 (21%), Positives = 33/65 (50%), Gaps = 2/65 (3%)
Query: 86 DLIITDYCMPGMTGYELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPV 145
D+ I D +P G L+++ + + +P++++++ L GA+D++ KP
Sbjct: 46 DIAIVDLGLPDEDGLSLIRRWRSNDV--SLPILVLTARESWQDKVEVLSAGADDYVTKPF 103
Query: 146 KLSDV 150
+ +V
Sbjct: 104 HIEEV 108
>pdb|3HZH|A Chain A, Crystal Structure Of The Chex-Chey-Bef3-Mg+2 Complex From
Borrelia Burgdorferi
Length = 157
Score = 30.8 bits (68), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 30/117 (25%), Positives = 51/117 (43%), Gaps = 14/117 (11%)
Query: 31 HVLAVDDSFVDRKVIERLLTISSCKV--TAVDSGRRALQFLGLDEEQSINGFDGLKVDLI 88
+VL VDDS K + ++ T + TA D +++ N + +D++
Sbjct: 38 NVLIVDDSVFTVKQLTQIFTSEGFNIIDTAADGEEAVIKYK--------NHYPN--IDIV 87
Query: 89 ITDYCMPGMTGYELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPV 145
MP M G L I + + V+++S+ + CL GA+ FIVKP+
Sbjct: 88 TLXITMPKMDGITCLSNIMEFD--KNARVIMISALGKEQLVKDCLIKGAKTFIVKPL 142
>pdb|1A04|A Chain A, The Structure Of The NitrateNITRITE RESPONSE REGULATOR
Protein Narl In The Monoclinic C2 Crystal Form
pdb|1A04|B Chain B, The Structure Of The NitrateNITRITE RESPONSE REGULATOR
Protein Narl In The Monoclinic C2 Crystal Form
pdb|1RNL|A Chain A, The NitrateNITRITE RESPONSE REGULATOR PROTEIN NARL FROM
NARL
Length = 215
Score = 30.8 bits (68), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 35/126 (27%), Positives = 62/126 (49%), Gaps = 11/126 (8%)
Query: 25 SDTEEVHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLK 84
S+ E +L +DD + R +++L++++ +T V EQ I + L
Sbjct: 1 SNQEPATILLIDDHPMLRTGVKQLISMAP-DITVVGEASNG--------EQGIELAESLD 51
Query: 85 VDLIITDYCMPGMTGYELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKP 144
DLI+ D MPGM G E L K+++ S I V+ S N + L+ GA+ +++K
Sbjct: 52 PDLILLDLNMPGMNGLETLDKLREKSLSGRI--VVFSVSNHEEDVVTALKRGADGYLLKD 109
Query: 145 VKLSDV 150
++ D+
Sbjct: 110 MEPEDL 115
>pdb|3F6C|A Chain A, Crystal Structure Of N-Terminal Domain Of Positive
Transcription Regulator Evga From Escherichia Coli
pdb|3F6C|B Chain B, Crystal Structure Of N-Terminal Domain Of Positive
Transcription Regulator Evga From Escherichia Coli
Length = 134
Score = 30.4 bits (67), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 18/70 (25%), Positives = 39/70 (55%), Gaps = 6/70 (8%)
Query: 83 LKVDLIITDYCMPGMTGYELLKKIKDSSALREIP--VVIMSSENILARIDRCLEDGAEDF 140
LK D++I D +PG+ G ++L+ ++ R+ ++I+S++N C + GA F
Sbjct: 45 LKPDIVIIDVDIPGVNGIQVLETLRK----RQYSGIIIIVSAKNDHFYGKHCADAGANGF 100
Query: 141 IVKPVKLSDV 150
+ K ++++
Sbjct: 101 VSKKEGMNNI 110
>pdb|2LLE|A Chain A, Computational Design Of An Eight-Stranded
(BetaALPHA)-Barrel From Fragments Of Different Folds
Length = 234
Score = 30.0 bits (66), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 37/70 (52%), Gaps = 6/70 (8%)
Query: 75 QSINGFDGLKVDLIITDYCMPGMTGYELLKKIK--DSSALREIPVVIMSSENILARIDRC 132
+++ + LK D++ D MP M G + +K+I D +A +++ S+ A +
Sbjct: 16 EAVEKYKELKPDIVTMDITMPEMNGIDAIKEIMKIDPNA----KIIVCSAMGQQAMVIEA 71
Query: 133 LEDGAEDFIV 142
++ GA+ FIV
Sbjct: 72 IKAGAKGFIV 81
>pdb|2RDM|A Chain A, Crystal Structure Of Response Regulator Receiver Protein
From Sinorhizobium Medicae Wsm419
pdb|2RDM|B Chain B, Crystal Structure Of Response Regulator Receiver Protein
From Sinorhizobium Medicae Wsm419
pdb|2RDM|C Chain C, Crystal Structure Of Response Regulator Receiver Protein
From Sinorhizobium Medicae Wsm419
Length = 132
Score = 28.9 bits (63), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 46/105 (43%), Gaps = 23/105 (21%)
Query: 28 EEVHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDL 87
E V +L DD + E LT + VTAV SG +A++ L G +D
Sbjct: 4 EAVTILLADDEAILLLDFESTLTDAGFLVTAVSSGAKAIEXLK----------SGAAIDG 53
Query: 88 IITD--YCMPGMTGYELLKKIKDSSALREI----PVVIMSSENIL 126
++TD +C P G+++ + REI P+V +S L
Sbjct: 54 VVTDIRFCQP-PDGWQVAR------VAREIDPNXPIVYISGHAAL 91
>pdb|3LUA|A Chain A, Crystal Structure Of A Signal Receiver Domain Of Two
Component Signal Transduction (Histidine Kinase) From
Clostridium Thermocellum
Length = 140
Score = 28.5 bits (62), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 18/61 (29%), Positives = 29/61 (47%), Gaps = 1/61 (1%)
Query: 85 VDLIITDYCMP-GMTGYELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVK 143
+ LII D P G E+L I+++S PV+I + + L+ D+I+K
Sbjct: 51 ITLIIXDIAFPVEKEGLEVLSAIRNNSRTANTPVIIATKSDNPGYRHAALKFKVSDYILK 110
Query: 144 P 144
P
Sbjct: 111 P 111
>pdb|3HNO|A Chain A, Crystal Structure Of Pyrophosphate-Dependent
Phosphofructokinase From Nitrosospira Multiformis.
Northeast Structural Genomics Consortium Target Id Nmr42
pdb|3HNO|B Chain B, Crystal Structure Of Pyrophosphate-Dependent
Phosphofructokinase From Nitrosospira Multiformis.
Northeast Structural Genomics Consortium Target Id Nmr42
pdb|3HNO|C Chain C, Crystal Structure Of Pyrophosphate-Dependent
Phosphofructokinase From Nitrosospira Multiformis.
Northeast Structural Genomics Consortium Target Id Nmr42
pdb|3HNO|D Chain D, Crystal Structure Of Pyrophosphate-Dependent
Phosphofructokinase From Nitrosospira Multiformis.
Northeast Structural Genomics Consortium Target Id Nmr42
Length = 419
Score = 27.7 bits (60), Expect = 5.6, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 30/61 (49%), Gaps = 8/61 (13%)
Query: 109 SSALREIPVVIMSSE------NILARIDRCLEDGAEDFIV--KPVKLSDVKRIKDYLTRD 160
SS REIPVVI+ E LA++D C++ +V + VK D K + D RD
Sbjct: 205 SSPEREIPVVILFPEISFDKQKFLAKVDSCVKKFGYCSVVVSEGVKGDDGKFLSDQGVRD 264
Query: 161 V 161
Sbjct: 265 A 265
>pdb|3A0U|A Chain A, Crystal Structure Of Response Regulator Protein Trra
(Tm1360) From Thermotoga Maritima In Complex With
Mg(2+)- Bef (Wild Type)
Length = 116
Score = 27.3 bits (59), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 12/34 (35%), Positives = 21/34 (61%)
Query: 74 EQSINGFDGLKVDLIITDYCMPGMTGYELLKKIK 107
E+++ F DL+I D MPG++G E+ +I+
Sbjct: 35 EEALKKFFSGNYDLVILDIEMPGISGLEVAGEIR 68
>pdb|1WLH|A Chain A, Molecular Structure Of The Rod Domain Of Dictyostelium
Filamin
pdb|1WLH|B Chain B, Molecular Structure Of The Rod Domain Of Dictyostelium
Filamin
Length = 311
Score = 27.3 bits (59), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 29/89 (32%), Positives = 42/89 (47%), Gaps = 9/89 (10%)
Query: 7 VASLRLISDEIDGFD----LSPSDTEEVHVLAVDDSFVDRKVIERLLTISSCKVTAVDSG 62
V +L L D ++GF + P+ + E H A + V KV + + + AVD+
Sbjct: 80 VINLTLDGDNVNGFPKTVTVKPAPSAE-HSYAEGEGLV--KVFDNAP--AEFTIFAVDTK 134
Query: 63 RRALQFLGLDEEQSINGFDGLKVDLIITD 91
A G E +ING DGL VD +TD
Sbjct: 135 GVARTDGGDPFEVAINGPDGLVVDAKVTD 163
>pdb|2GWR|A Chain A, Crystal Structure Of The Response Regulator Protein Mtra
From Mycobacterium Tuberculosis
Length = 238
Score = 27.3 bits (59), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 14/51 (27%), Positives = 28/51 (54%), Gaps = 3/51 (5%)
Query: 96 GMTGYELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVK 146
G G ++ + ++ S +P+V ++++ + LE GA+D+I KP K
Sbjct: 61 GXNGIDVCRVLRADSG---VPIVXLTAKTDTVDVVLGLESGADDYIXKPFK 108
>pdb|1SU3|A Chain A, X-Ray Structure Of Human Prommp-1: New Insights Into
Collagenase Action
pdb|1SU3|B Chain B, X-Ray Structure Of Human Prommp-1: New Insights Into
Collagenase Action
Length = 450
Score = 26.9 bits (58), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 11/27 (40%), Positives = 17/27 (62%)
Query: 148 SDVKRIKDYLTRDVNLGNEGRGINKRK 174
DV ++ YL + NL N+GR + KR+
Sbjct: 10 QDVDLVQKYLEKYYNLKNDGRQVEKRR 36
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.136 0.376
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,384,356
Number of Sequences: 62578
Number of extensions: 195495
Number of successful extensions: 704
Number of sequences better than 100.0: 154
Number of HSP's better than 100.0 without gapping: 110
Number of HSP's successfully gapped in prelim test: 44
Number of HSP's that attempted gapping in prelim test: 534
Number of HSP's gapped (non-prelim): 157
length of query: 233
length of database: 14,973,337
effective HSP length: 96
effective length of query: 137
effective length of database: 8,965,849
effective search space: 1228321313
effective search space used: 1228321313
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)