Query 026776
Match_columns 233
No_of_seqs 278 out of 1639
Neff 8.5
Searched_HMMs 46136
Date Fri Mar 29 12:31:58 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026776.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026776hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0745 OmpR Response regulato 99.9 3.1E-23 6.6E-28 172.1 16.5 119 30-161 1-119 (229)
2 COG2204 AtoC Response regulato 99.9 1.7E-21 3.8E-26 174.1 15.5 122 29-163 4-125 (464)
3 COG4753 Response regulator con 99.9 9.1E-21 2E-25 169.3 13.6 120 30-162 2-124 (475)
4 COG4566 TtrR Response regulato 99.8 1.7E-20 3.6E-25 147.3 12.8 118 29-159 4-121 (202)
5 PF00072 Response_reg: Respons 99.8 8.3E-20 1.8E-24 133.9 14.3 110 32-154 1-111 (112)
6 PLN03029 type-a response regul 99.8 1.9E-19 4.1E-24 149.0 17.9 134 26-159 5-147 (222)
7 COG4565 CitB Response regulato 99.8 5E-20 1.1E-24 147.3 13.6 121 30-163 1-123 (224)
8 COG3437 Response regulator con 99.8 1.2E-19 2.6E-24 155.3 13.3 125 19-154 4-129 (360)
9 COG2197 CitB Response regulato 99.8 4.3E-18 9.3E-23 139.8 16.0 117 30-159 1-119 (211)
10 KOG0519 Sensory transduction h 99.8 4.9E-18 1.1E-22 162.8 14.9 124 23-157 660-783 (786)
11 PRK10046 dpiA two-component re 99.8 2.8E-17 6.1E-22 136.0 17.0 120 28-160 3-124 (225)
12 COG0784 CheY FOG: CheY-like re 99.8 4.7E-17 1E-21 122.3 16.7 115 28-155 4-121 (130)
13 COG4567 Response regulator con 99.7 3.5E-17 7.5E-22 124.1 12.9 111 31-154 11-121 (182)
14 COG3706 PleD Response regulato 99.7 6.7E-17 1.5E-21 143.7 15.6 113 28-151 131-243 (435)
15 PRK10816 DNA-binding transcrip 99.7 2.1E-16 4.6E-21 129.4 16.5 117 30-159 1-117 (223)
16 PRK09836 DNA-binding transcrip 99.7 2.9E-16 6.2E-21 128.9 16.8 117 30-159 1-117 (227)
17 PRK11173 two-component respons 99.7 3.5E-16 7.6E-21 129.5 17.1 118 28-159 2-119 (237)
18 COG3947 Response regulator con 99.7 2.5E-17 5.5E-22 137.2 9.9 119 30-163 1-119 (361)
19 PRK10841 hybrid sensory kinase 99.7 2.6E-16 5.7E-21 153.9 18.3 120 27-159 799-918 (924)
20 PRK10529 DNA-binding transcrip 99.7 4.6E-16 9.9E-21 127.4 16.9 116 30-159 2-117 (225)
21 PRK10643 DNA-binding transcrip 99.7 5.7E-16 1.2E-20 126.0 17.1 117 30-159 1-117 (222)
22 PRK10161 transcriptional regul 99.7 6.4E-16 1.4E-20 127.0 17.0 120 30-160 3-122 (229)
23 PRK11107 hybrid sensory histid 99.7 3.1E-16 6.7E-21 153.1 16.9 121 27-158 665-785 (919)
24 PRK10336 DNA-binding transcrip 99.7 7.5E-16 1.6E-20 125.2 16.5 117 30-159 1-117 (219)
25 TIGR02154 PhoB phosphate regul 99.7 8.2E-16 1.8E-20 125.3 16.6 120 30-160 3-122 (226)
26 PRK09468 ompR osmolarity respo 99.7 9.6E-16 2.1E-20 126.9 17.1 119 28-159 4-122 (239)
27 PRK10840 transcriptional regul 99.7 6.8E-16 1.5E-20 126.6 15.8 119 28-159 2-125 (216)
28 PRK11083 DNA-binding response 99.7 1.2E-15 2.6E-20 124.6 16.8 118 29-159 3-120 (228)
29 PRK10766 DNA-binding transcrip 99.7 1.4E-15 2.9E-20 124.3 16.6 117 30-160 3-119 (221)
30 TIGR03787 marine_sort_RR prote 99.7 1.9E-15 4.2E-20 123.8 16.5 117 31-160 2-120 (227)
31 PRK15347 two component system 99.7 1.1E-15 2.4E-20 149.3 17.7 121 27-158 688-810 (921)
32 PRK10430 DNA-binding transcrip 99.7 1.8E-15 3.8E-20 126.2 16.3 119 30-159 2-122 (239)
33 PRK10701 DNA-binding transcrip 99.7 2.3E-15 4.9E-20 124.8 16.6 117 30-160 2-118 (240)
34 PRK11517 transcriptional regul 99.7 2.9E-15 6.3E-20 122.2 16.6 116 30-159 1-116 (223)
35 TIGR02875 spore_0_A sporulatio 99.7 2.2E-15 4.7E-20 127.1 16.3 119 29-158 2-122 (262)
36 CHL00148 orf27 Ycf27; Reviewed 99.7 3.6E-15 7.7E-20 123.0 17.2 118 28-159 5-122 (240)
37 PRK13856 two-component respons 99.7 3.5E-15 7.6E-20 124.0 16.4 115 31-159 3-118 (241)
38 PRK09958 DNA-binding transcrip 99.7 3.6E-15 7.8E-20 120.1 15.9 117 30-159 1-118 (204)
39 PRK10955 DNA-binding transcrip 99.7 4.5E-15 9.8E-20 121.8 16.5 115 30-159 2-116 (232)
40 PRK11466 hybrid sensory histid 99.7 1.8E-15 3.9E-20 148.0 16.4 121 27-159 679-799 (914)
41 TIGR02956 TMAO_torS TMAO reduc 99.7 2.7E-15 5.8E-20 147.5 16.7 121 28-159 701-822 (968)
42 TIGR01387 cztR_silR_copR heavy 99.7 8.3E-15 1.8E-19 118.8 16.4 115 32-159 1-115 (218)
43 PRK10923 glnG nitrogen regulat 99.6 7.3E-15 1.6E-19 134.0 17.1 117 29-158 3-119 (469)
44 PRK11091 aerobic respiration c 99.6 5.4E-15 1.2E-19 142.5 17.0 121 27-159 523-644 (779)
45 PRK09483 response regulator; P 99.6 1E-14 2.2E-19 118.7 15.8 117 30-159 2-120 (217)
46 PRK15115 response regulator Gl 99.6 6.7E-15 1.5E-19 133.3 16.1 119 28-159 4-122 (444)
47 PRK14084 two-component respons 99.6 1E-14 2.2E-19 121.7 15.9 115 30-159 1-117 (246)
48 PRK11361 acetoacetate metaboli 99.6 7.7E-15 1.7E-19 133.3 16.2 118 28-158 3-120 (457)
49 PRK09581 pleD response regulat 99.6 3.1E-15 6.7E-20 134.6 13.3 118 27-156 153-270 (457)
50 PRK10365 transcriptional regul 99.6 6E-15 1.3E-19 133.4 15.2 118 28-158 4-121 (441)
51 PRK09935 transcriptional regul 99.6 1.8E-14 3.8E-19 116.2 16.4 119 28-159 2-122 (210)
52 PRK09959 hybrid sensory histid 99.6 1.1E-14 2.4E-19 146.1 17.3 119 28-159 957-1075(1197)
53 TIGR02915 PEP_resp_reg putativ 99.6 1.3E-14 2.9E-19 131.5 14.2 112 32-158 1-117 (445)
54 PRK10710 DNA-binding transcrip 99.6 9.3E-14 2E-18 114.5 17.9 117 29-159 10-126 (240)
55 PRK15479 transcriptional regul 99.6 6.2E-14 1.3E-18 113.9 16.5 117 30-159 1-117 (221)
56 PRK10360 DNA-binding transcrip 99.6 5.8E-14 1.3E-18 112.4 15.9 114 30-159 2-117 (196)
57 TIGR01818 ntrC nitrogen regula 99.6 3.2E-14 6.9E-19 129.6 15.4 114 32-158 1-114 (463)
58 PRK11697 putative two-componen 99.6 5E-14 1.1E-18 116.8 15.4 114 30-159 2-117 (238)
59 PRK10610 chemotaxis regulatory 99.6 3.1E-13 6.8E-18 98.8 17.3 121 28-159 4-125 (129)
60 PRK09390 fixJ response regulat 99.6 8.5E-14 1.8E-18 110.8 14.9 118 28-158 2-119 (202)
61 PRK12555 chemotaxis-specific m 99.6 7.1E-14 1.5E-18 122.5 15.4 102 30-145 1-106 (337)
62 PRK09581 pleD response regulat 99.6 1.1E-13 2.4E-18 124.5 17.1 119 30-159 3-121 (457)
63 PRK10100 DNA-binding transcrip 99.6 1.2E-13 2.6E-18 113.8 14.5 117 26-159 7-126 (216)
64 PRK00742 chemotaxis-specific m 99.5 2.2E-13 4.7E-18 120.2 16.1 105 28-146 2-110 (354)
65 PRK13435 response regulator; P 99.5 4.1E-13 8.9E-18 103.0 15.3 114 28-158 4-119 (145)
66 PRK10651 transcriptional regul 99.5 4.7E-13 1E-17 108.0 16.4 121 26-159 3-125 (216)
67 PRK13558 bacterio-opsin activa 99.5 1.4E-13 3.1E-18 130.5 15.4 106 29-147 7-112 (665)
68 PRK10403 transcriptional regul 99.5 5.9E-13 1.3E-17 107.3 16.2 119 28-159 5-125 (215)
69 PRK15369 two component system 99.5 8.3E-13 1.8E-17 105.6 16.1 119 28-159 2-122 (211)
70 PRK11475 DNA-binding transcrip 99.5 3.1E-13 6.7E-18 110.7 13.6 106 42-160 3-115 (207)
71 COG2201 CheB Chemotaxis respon 99.5 5.3E-13 1.2E-17 115.6 13.9 104 29-146 1-108 (350)
72 PRK15411 rcsA colanic acid cap 99.5 1.4E-12 3E-17 106.9 14.1 116 30-159 1-122 (207)
73 PRK13837 two-component VirA-li 99.4 4.4E-12 9.4E-17 123.3 16.6 118 28-159 696-813 (828)
74 COG3707 AmiR Response regulato 99.4 2.5E-12 5.3E-17 101.9 11.7 114 28-155 4-118 (194)
75 PRK09191 two-component respons 99.4 1.2E-11 2.6E-16 103.8 15.5 115 29-159 137-253 (261)
76 cd00156 REC Signal receiver do 99.3 3.4E-11 7.3E-16 84.3 12.8 110 33-155 1-110 (113)
77 PRK13557 histidine kinase; Pro 99.3 5.2E-11 1.1E-15 109.4 15.7 119 28-158 414-533 (540)
78 PRK10693 response regulator of 99.3 2.8E-11 6.2E-16 104.6 11.9 87 58-157 2-89 (303)
79 PRK15029 arginine decarboxylas 99.3 5.7E-11 1.2E-15 113.0 12.8 107 30-150 1-122 (755)
80 COG3279 LytT Response regulato 99.2 1.7E-10 3.7E-15 96.8 10.6 115 30-159 2-118 (244)
81 PRK11107 hybrid sensory histid 98.6 8.2E-07 1.8E-11 87.1 14.7 114 27-155 534-647 (919)
82 COG3706 PleD Response regulato 98.2 2.7E-06 5.8E-11 76.4 5.2 84 54-152 13-96 (435)
83 smart00448 REC cheY-homologous 97.9 0.00011 2.3E-09 43.7 7.4 55 30-95 1-55 (55)
84 PF06490 FleQ: Flagellar regul 97.8 0.00022 4.7E-09 52.4 9.7 107 31-157 1-107 (109)
85 cd02071 MM_CoA_mut_B12_BD meth 97.6 0.0029 6.2E-08 47.3 12.9 105 36-153 10-119 (122)
86 PRK02261 methylaspartate mutas 97.6 0.0054 1.2E-07 46.9 13.8 115 28-155 2-131 (137)
87 PF03709 OKR_DC_1_N: Orn/Lys/A 97.6 0.0011 2.4E-08 49.1 9.7 96 42-150 6-103 (115)
88 TIGR00640 acid_CoA_mut_C methy 97.4 0.014 3E-07 44.3 14.1 114 29-155 2-124 (132)
89 cd02067 B12-binding B12 bindin 97.1 0.012 2.5E-07 43.5 10.6 96 36-144 10-110 (119)
90 PRK10618 phosphotransfer inter 96.6 0.0027 5.9E-08 62.7 5.1 51 27-94 687-737 (894)
91 COG2185 Sbm Methylmalonyl-CoA 96.4 0.14 3.1E-06 39.2 12.3 118 27-157 10-137 (143)
92 TIGR01501 MthylAspMutase methy 96.4 0.17 3.6E-06 38.5 12.5 107 37-156 13-130 (134)
93 PRK15399 lysine decarboxylase 96.2 0.072 1.6E-06 51.2 11.7 102 30-146 1-108 (713)
94 COG4999 Uncharacterized domain 96.0 0.036 7.8E-07 41.0 6.9 109 27-152 9-119 (140)
95 cd02070 corrinoid_protein_B12- 96.0 0.15 3.2E-06 41.4 11.5 101 29-143 82-191 (201)
96 PRK15400 lysine decarboxylase 95.9 0.09 1.9E-06 50.6 11.1 100 30-144 1-106 (714)
97 PF02310 B12-binding: B12 bind 95.5 0.29 6.2E-06 35.8 10.3 93 38-144 13-112 (121)
98 cd02069 methionine_synthase_B1 95.4 0.24 5.1E-06 40.7 10.5 103 29-144 88-202 (213)
99 PRK09426 methylmalonyl-CoA mut 95.4 0.46 1E-05 46.0 13.7 118 27-157 580-707 (714)
100 cd02072 Glm_B12_BD B12 binding 95.3 0.92 2E-05 34.2 12.4 104 37-153 11-125 (128)
101 TIGR03815 CpaE_hom_Actino heli 95.1 0.12 2.5E-06 45.1 8.2 65 85-157 20-85 (322)
102 TIGR02370 pyl_corrinoid methyl 94.4 0.56 1.2E-05 38.0 9.9 92 37-142 96-192 (197)
103 cd04728 ThiG Thiazole synthase 93.4 1.2 2.5E-05 37.4 10.1 96 28-143 92-204 (248)
104 PRK00208 thiG thiazole synthas 93.2 1.3 2.9E-05 37.1 10.1 96 28-143 92-204 (250)
105 COG0512 PabA Anthranilate/para 93.0 0.41 9E-06 38.5 6.6 77 30-122 2-82 (191)
106 PRK10558 alpha-dehydro-beta-de 92.5 1.8 3.9E-05 36.6 10.3 74 82-156 38-112 (256)
107 PRK03958 tRNA 2'-O-methylase; 91.9 5.4 0.00012 31.7 12.2 58 30-96 32-91 (176)
108 TIGR03239 GarL 2-dehydro-3-deo 91.3 3.6 7.8E-05 34.6 10.7 73 83-156 32-105 (249)
109 cd02068 radical_SAM_B12_BD B12 90.7 3.4 7.3E-05 30.6 9.1 104 41-158 4-111 (127)
110 PRK10128 2-keto-3-deoxy-L-rham 90.4 4.4 9.6E-05 34.5 10.6 73 83-156 38-111 (267)
111 TIGR02311 HpaI 2,4-dihydroxyhe 90.1 3.8 8.3E-05 34.4 9.9 76 82-158 31-107 (249)
112 PF01408 GFO_IDH_MocA: Oxidore 90.0 5.6 0.00012 28.7 10.1 37 124-160 74-112 (120)
113 PF07688 KaiA: KaiA domain; I 89.4 3.2 7E-05 34.9 8.6 79 31-123 2-80 (283)
114 PRK13111 trpA tryptophan synth 89.1 2.1 4.6E-05 36.3 7.6 60 98-159 75-140 (258)
115 PRK08385 nicotinate-nucleotide 89.0 8.1 0.00017 33.1 11.1 96 32-142 157-258 (278)
116 PF02254 TrkA_N: TrkA-N domain 88.3 7.6 0.00017 27.8 9.9 93 30-142 22-115 (116)
117 COG3836 HpcH 2,4-dihydroxyhept 87.9 11 0.00024 31.5 10.7 78 82-160 36-113 (255)
118 TIGR00262 trpA tryptophan synt 87.3 3.3 7.2E-05 35.0 7.7 60 98-159 73-138 (256)
119 PF03602 Cons_hypoth95: Conser 87.2 3.3 7.1E-05 33.1 7.2 72 30-110 66-141 (183)
120 TIGR02026 BchE magnesium-proto 87.1 9.7 0.00021 35.3 11.3 108 38-159 21-137 (497)
121 KOG4175 Tryptophan synthase al 85.8 3.9 8.5E-05 33.3 6.9 57 101-159 84-146 (268)
122 COG2022 ThiG Uncharacterized e 85.8 7.3 0.00016 32.5 8.5 101 28-144 99-212 (262)
123 TIGR01334 modD putative molybd 85.7 6.3 0.00014 33.8 8.6 70 56-141 192-261 (277)
124 PRK07896 nicotinate-nucleotide 85.7 4.5 9.8E-05 34.8 7.7 94 32-141 173-272 (289)
125 PF05690 ThiG: Thiazole biosyn 85.7 4.6 0.0001 33.7 7.4 100 28-143 92-204 (247)
126 PRK05749 3-deoxy-D-manno-octul 85.2 14 0.0003 33.2 11.1 67 85-158 320-386 (425)
127 PF01729 QRPTase_C: Quinolinat 84.8 5.4 0.00012 31.5 7.3 94 32-141 53-153 (169)
128 PLN02591 tryptophan synthase 84.5 5.6 0.00012 33.5 7.7 59 98-159 65-129 (250)
129 PRK01130 N-acetylmannosamine-6 84.5 17 0.00036 29.7 10.4 85 44-143 109-202 (221)
130 cd04724 Tryptophan_synthase_al 84.5 6.4 0.00014 32.9 8.0 59 98-159 63-127 (242)
131 TIGR00566 trpG_papA glutamine 84.5 2.8 6.1E-05 33.5 5.7 76 32-122 2-80 (188)
132 PRK00043 thiE thiamine-phospha 84.5 14 0.00031 29.5 10.0 57 83-142 123-187 (212)
133 PRK03659 glutathione-regulated 84.0 13 0.00027 35.5 10.7 111 29-145 400-520 (601)
134 PLN02335 anthranilate synthase 84.0 4.1 8.8E-05 33.6 6.6 82 26-121 15-98 (222)
135 PRK06543 nicotinate-nucleotide 83.8 14 0.0003 31.8 9.8 91 31-140 161-262 (281)
136 PF10087 DUF2325: Uncharacteri 83.0 14 0.0003 26.0 9.8 87 31-133 1-93 (97)
137 CHL00200 trpA tryptophan synth 83.0 6.4 0.00014 33.4 7.5 59 98-159 78-142 (263)
138 CHL00162 thiG thiamin biosynth 81.8 16 0.00035 30.9 9.1 113 29-157 107-237 (267)
139 cd05212 NAD_bind_m-THF_DH_Cycl 81.4 8.4 0.00018 29.4 7.0 54 27-96 26-83 (140)
140 PRK05718 keto-hydroxyglutarate 81.1 28 0.0006 28.6 10.3 92 47-152 10-102 (212)
141 PRK03562 glutathione-regulated 80.7 17 0.00036 34.9 10.2 107 30-142 401-517 (621)
142 PRK05458 guanosine 5'-monophos 80.3 8 0.00017 33.9 7.2 54 85-141 112-166 (326)
143 TIGR02855 spore_yabG sporulati 80.1 22 0.00048 30.3 9.5 102 29-144 104-226 (283)
144 COG0159 TrpA Tryptophan syntha 79.7 11 0.00023 32.1 7.5 59 98-158 80-144 (265)
145 PRK08007 para-aminobenzoate sy 79.7 3.7 8E-05 32.8 4.7 76 32-121 2-79 (187)
146 TIGR00007 phosphoribosylformim 79.6 32 0.0007 28.1 10.5 56 84-142 158-217 (230)
147 PRK05703 flhF flagellar biosyn 79.5 25 0.00055 32.0 10.5 120 29-158 251-381 (424)
148 PRK07649 para-aminobenzoate/an 79.4 2.5 5.4E-05 34.1 3.6 75 32-121 2-79 (195)
149 PRK06975 bifunctional uroporph 79.3 63 0.0014 31.2 14.5 30 28-58 138-167 (656)
150 PF03328 HpcH_HpaI: HpcH/HpaI 78.8 28 0.00061 28.3 9.8 76 82-158 19-107 (221)
151 PRK13125 trpA tryptophan synth 78.6 32 0.0007 28.6 10.2 89 42-144 118-215 (244)
152 COG4122 Predicted O-methyltran 78.6 11 0.00024 31.1 7.3 55 30-95 85-143 (219)
153 PRK06774 para-aminobenzoate sy 78.6 2.7 5.9E-05 33.6 3.6 75 32-122 2-80 (191)
154 PF05582 Peptidase_U57: YabG p 78.4 22 0.00048 30.5 9.0 102 29-144 105-227 (287)
155 COG0157 NadC Nicotinate-nucleo 78.2 37 0.0008 29.1 10.3 92 32-140 161-259 (280)
156 TIGR00693 thiE thiamine-phosph 78.0 31 0.00068 27.3 9.7 57 83-142 115-179 (196)
157 PRK10669 putative cation:proto 77.8 23 0.00049 33.3 10.0 106 30-141 418-533 (558)
158 cd00452 KDPG_aldolase KDPG and 77.7 24 0.00052 28.1 8.9 70 58-144 103-172 (190)
159 cd02065 B12-binding_like B12 b 77.6 16 0.00035 26.4 7.3 74 36-121 10-87 (125)
160 PRK15320 transcriptional activ 77.6 6.9 0.00015 31.9 5.5 99 31-144 3-103 (251)
161 PRK11840 bifunctional sulfur c 77.5 49 0.0011 29.0 11.2 112 28-155 166-295 (326)
162 TIGR02082 metH 5-methyltetrahy 77.3 19 0.00042 37.2 9.8 104 29-145 732-847 (1178)
163 TIGR03151 enACPred_II putative 77.3 28 0.00062 30.2 9.8 84 45-143 101-190 (307)
164 PRK05637 anthranilate synthase 77.2 9.9 0.00021 31.0 6.6 77 31-122 3-81 (208)
165 PLN02871 UDP-sulfoquinovose:DA 77.2 39 0.00084 30.8 11.2 64 85-158 332-398 (465)
166 PRK06978 nicotinate-nucleotide 77.1 20 0.00042 31.1 8.5 91 31-140 178-274 (294)
167 PRK05670 anthranilate synthase 76.5 7.2 0.00016 31.1 5.5 30 32-61 2-31 (189)
168 COG0742 N6-adenine-specific me 76.5 38 0.00083 27.2 9.9 57 29-95 66-125 (187)
169 PRK13566 anthranilate synthase 76.4 13 0.00029 36.2 8.2 82 25-122 522-606 (720)
170 PRK09490 metH B12-dependent me 76.3 19 0.00041 37.3 9.5 103 29-144 751-865 (1229)
171 cd06346 PBP1_ABC_ligand_bindin 76.2 44 0.00095 28.4 10.7 66 42-122 154-226 (312)
172 TIGR00642 mmCoA_mut_beta methy 76.0 22 0.00047 34.1 9.3 121 4-150 478-608 (619)
173 PRK06895 putative anthranilate 75.9 11 0.00024 30.0 6.5 31 30-60 2-32 (190)
174 PRK12724 flagellar biosynthesi 75.8 39 0.00085 30.9 10.4 114 30-156 253-381 (432)
175 PRK09016 quinolinate phosphori 75.4 17 0.00037 31.4 7.8 91 32-141 182-278 (296)
176 PRK09140 2-dehydro-3-deoxy-6-p 75.4 38 0.00082 27.6 9.5 62 89-153 38-99 (206)
177 cd04729 NanE N-acetylmannosami 74.9 44 0.00095 27.1 11.4 71 58-143 129-206 (219)
178 PF00290 Trp_syntA: Tryptophan 74.8 8.9 0.00019 32.5 5.8 59 98-158 73-137 (259)
179 PRK06559 nicotinate-nucleotide 74.5 33 0.00071 29.6 9.2 91 31-140 169-266 (290)
180 PF01596 Methyltransf_3: O-met 74.4 25 0.00054 28.6 8.2 58 29-93 70-130 (205)
181 PRK14974 cell division protein 74.4 56 0.0012 28.8 10.9 63 83-145 221-289 (336)
182 PRK07428 nicotinate-nucleotide 74.1 19 0.00041 31.0 7.7 95 32-142 169-270 (288)
183 cd04730 NPD_like 2-Nitropropan 74.1 47 0.001 27.1 11.0 57 84-143 122-185 (236)
184 PF04321 RmlD_sub_bind: RmlD s 73.5 6.4 0.00014 33.6 4.8 54 30-94 1-61 (286)
185 PRK00811 spermidine synthase; 73.3 43 0.00094 28.6 9.8 67 30-108 101-179 (283)
186 TIGR00343 pyridoxal 5'-phospha 73.2 19 0.0004 31.0 7.3 50 98-150 184-240 (287)
187 PF01081 Aldolase: KDPG and KH 73.2 13 0.00028 30.2 6.2 59 89-151 36-94 (196)
188 PRK06843 inosine 5-monophospha 73.1 17 0.00036 33.0 7.4 56 83-141 164-220 (404)
189 PRK11359 cyclic-di-GMP phospho 73.0 29 0.00063 33.6 9.8 99 45-155 683-792 (799)
190 PRK06096 molybdenum transport 72.3 25 0.00053 30.3 8.0 72 55-142 192-263 (284)
191 TIGR01305 GMP_reduct_1 guanosi 72.2 67 0.0015 28.4 10.7 57 84-143 121-178 (343)
192 PF07652 Flavi_DEAD: Flaviviru 72.1 30 0.00065 26.7 7.6 88 28-123 32-135 (148)
193 TIGR01182 eda Entner-Doudoroff 71.8 40 0.00086 27.5 8.8 54 94-151 41-94 (204)
194 COG0673 MviM Predicted dehydro 71.8 55 0.0012 28.1 10.4 38 123-160 78-117 (342)
195 COG0313 Predicted methyltransf 71.8 34 0.00074 29.2 8.5 85 29-124 30-116 (275)
196 CHL00101 trpG anthranilate syn 71.5 10 0.00022 30.3 5.3 31 32-62 2-32 (190)
197 cd04727 pdxS PdxS is a subunit 71.4 24 0.00052 30.3 7.6 43 98-143 181-225 (283)
198 TIGR03088 stp2 sugar transfera 71.3 42 0.0009 29.1 9.6 65 85-159 273-337 (374)
199 cd06533 Glyco_transf_WecG_TagA 71.2 27 0.00059 27.4 7.6 70 27-109 44-122 (171)
200 PRK05282 (alpha)-aspartyl dipe 71.2 35 0.00075 28.4 8.5 66 28-110 30-101 (233)
201 PF01729 QRPTase_C: Quinolinat 70.3 21 0.00046 28.1 6.7 57 99-159 66-123 (169)
202 PRK12704 phosphodiesterase; Pr 70.2 9.3 0.0002 35.8 5.3 38 115-152 250-289 (520)
203 cd01573 modD_like ModD; Quinol 69.9 59 0.0013 27.7 9.8 71 56-142 187-257 (272)
204 TIGR00736 nifR3_rel_arch TIM-b 69.8 28 0.0006 29.0 7.6 59 82-142 159-219 (231)
205 cd01948 EAL EAL domain. This d 69.7 16 0.00034 29.5 6.2 91 45-147 137-238 (240)
206 TIGR01579 MiaB-like-C MiaB-lik 69.7 45 0.00097 30.0 9.6 94 38-156 9-106 (414)
207 PRK05848 nicotinate-nucleotide 69.4 72 0.0016 27.3 11.7 95 32-142 155-256 (273)
208 TIGR00064 ftsY signal recognit 69.4 59 0.0013 27.6 9.7 107 29-143 100-225 (272)
209 PRK06552 keto-hydroxyglutarate 69.3 62 0.0013 26.5 9.8 93 48-153 9-104 (213)
210 PRK10742 putative methyltransf 69.1 57 0.0012 27.5 9.3 57 29-97 110-177 (250)
211 cd04723 HisA_HisF Phosphoribos 69.0 27 0.00058 28.9 7.4 54 86-142 161-217 (233)
212 smart00052 EAL Putative diguan 68.8 23 0.00051 28.5 7.0 91 45-147 138-239 (241)
213 PRK11889 flhF flagellar biosyn 68.7 95 0.0021 28.4 11.6 107 29-142 269-384 (436)
214 KOG1562 Spermidine synthase [A 68.7 39 0.00084 29.4 8.2 60 32-102 148-213 (337)
215 TIGR01303 IMP_DH_rel_1 IMP deh 68.3 20 0.00043 33.2 7.0 57 82-141 235-292 (475)
216 PF03808 Glyco_tran_WecB: Glyc 68.1 23 0.00049 27.8 6.5 71 27-110 46-125 (172)
217 PRK03708 ppnK inorganic polyph 68.1 69 0.0015 27.3 9.9 106 30-159 1-111 (277)
218 PRK14098 glycogen synthase; Pr 67.7 90 0.002 28.9 11.3 68 85-158 382-449 (489)
219 PRK12726 flagellar biosynthesi 67.3 80 0.0017 28.6 10.3 122 29-157 234-365 (407)
220 PLN02274 inosine-5'-monophosph 67.2 25 0.00053 32.9 7.4 58 82-142 258-316 (505)
221 PF14097 SpoVAE: Stage V sporu 67.2 62 0.0013 25.7 9.6 84 32-124 3-95 (180)
222 TIGR00095 RNA methyltransferas 66.6 64 0.0014 25.7 10.5 83 30-121 73-158 (189)
223 COG2200 Rtn c-di-GMP phosphodi 66.4 77 0.0017 26.5 10.4 98 45-154 141-249 (256)
224 PF04131 NanE: Putative N-acet 66.3 69 0.0015 25.9 10.0 69 59-143 99-173 (192)
225 cd05014 SIS_Kpsf KpsF-like pro 66.2 33 0.0007 24.9 6.7 91 36-145 9-100 (128)
226 COG0626 MetC Cystathionine bet 65.1 39 0.00085 30.5 8.0 97 29-141 102-205 (396)
227 cd01568 QPRTase_NadC Quinolina 65.1 25 0.00055 29.9 6.6 95 31-142 153-254 (269)
228 PLN02716 nicotinate-nucleotide 65.0 69 0.0015 27.9 9.2 100 32-140 173-287 (308)
229 PRK13170 hisH imidazole glycer 64.4 51 0.0011 26.4 8.0 35 30-64 1-35 (196)
230 PRK04302 triosephosphate isome 64.3 78 0.0017 25.8 11.9 43 100-144 161-203 (223)
231 TIGR01302 IMP_dehydrog inosine 63.9 27 0.00058 32.0 7.0 56 83-141 235-291 (450)
232 COG0421 SpeE Spermidine syntha 63.7 65 0.0014 27.7 8.9 68 30-109 101-179 (282)
233 PRK14722 flhF flagellar biosyn 63.6 73 0.0016 28.6 9.4 119 30-159 168-306 (374)
234 PRK06015 keto-hydroxyglutarate 63.6 62 0.0013 26.3 8.3 57 92-152 35-91 (201)
235 PTZ00314 inosine-5'-monophosph 63.5 1.1E+02 0.0023 28.6 10.8 56 83-141 252-308 (495)
236 PTZ00314 inosine-5'-monophosph 63.4 1.1E+02 0.0023 28.6 10.9 31 114-144 344-374 (495)
237 PRK10060 RNase II stability mo 63.4 77 0.0017 30.5 10.3 101 44-156 545-656 (663)
238 PRK00748 1-(5-phosphoribosyl)- 63.4 42 0.00091 27.4 7.5 55 85-142 160-219 (233)
239 PRK15484 lipopolysaccharide 1, 63.3 1.1E+02 0.0023 27.1 13.2 66 85-159 277-343 (380)
240 PRK05096 guanosine 5'-monophos 63.2 63 0.0014 28.6 8.7 55 83-140 121-176 (346)
241 cd03813 GT1_like_3 This family 63.1 95 0.0021 28.4 10.5 66 84-159 370-441 (475)
242 PRK01911 ppnK inorganic polyph 63.0 1E+02 0.0022 26.6 10.5 109 30-159 1-119 (292)
243 PRK02290 3-dehydroquinate synt 63.0 68 0.0015 28.4 8.8 69 86-159 90-160 (344)
244 cd06338 PBP1_ABC_ligand_bindin 62.9 98 0.0021 26.5 11.3 67 41-122 157-230 (345)
245 TIGR03061 pip_yhgE_Nterm YhgE/ 62.8 48 0.001 25.6 7.4 82 26-124 40-131 (164)
246 PRK00278 trpC indole-3-glycero 62.6 94 0.002 26.2 13.2 88 41-142 148-239 (260)
247 PRK14723 flhF flagellar biosyn 62.6 92 0.002 30.8 10.5 116 30-156 216-345 (767)
248 cd00381 IMPDH IMPDH: The catal 62.3 42 0.00091 29.4 7.6 58 82-142 104-162 (325)
249 PF06073 DUF934: Bacterial pro 62.3 59 0.0013 23.8 8.3 71 85-157 20-92 (110)
250 cd03823 GT1_ExpE7_like This fa 61.9 94 0.002 25.9 11.5 66 85-159 263-328 (359)
251 PRK08857 para-aminobenzoate sy 61.8 37 0.00079 27.1 6.7 29 32-60 2-30 (193)
252 cd00564 TMP_TenI Thiamine mono 61.4 75 0.0016 24.6 10.0 56 84-143 115-178 (196)
253 PLN02274 inosine-5'-monophosph 61.2 1.4E+02 0.0031 27.9 12.4 44 97-143 337-380 (505)
254 PRK12727 flagellar biosynthesi 60.9 78 0.0017 30.0 9.4 117 30-158 381-508 (559)
255 PF01564 Spermine_synth: Sperm 60.6 25 0.00054 29.4 5.7 67 30-108 101-179 (246)
256 cd06388 PBP1_iGluR_AMPA_GluR4 60.5 1.2E+02 0.0026 26.8 11.0 29 81-111 175-203 (371)
257 PRK05567 inosine 5'-monophosph 60.3 33 0.00071 31.8 6.9 57 82-141 238-295 (486)
258 TIGR00696 wecB_tagA_cpsF bacte 60.2 67 0.0015 25.5 7.9 70 27-109 46-123 (177)
259 TIGR00734 hisAF_rel hisA/hisF 60.0 64 0.0014 26.5 8.0 54 86-142 156-212 (221)
260 PRK12723 flagellar biosynthesi 59.7 1.3E+02 0.0029 27.0 10.9 118 29-157 206-335 (388)
261 TIGR01815 TrpE-clade3 anthrani 59.6 55 0.0012 32.0 8.5 78 27-122 514-596 (717)
262 cd04726 KGPDC_HPS 3-Keto-L-gul 59.4 87 0.0019 24.8 11.3 85 43-143 93-186 (202)
263 cd06341 PBP1_ABC_ligand_bindin 59.4 1.1E+02 0.0023 26.2 9.8 71 42-127 150-227 (341)
264 PRK13587 1-(5-phosphoribosyl)- 59.4 40 0.00087 28.0 6.7 54 86-142 164-220 (234)
265 cd00331 IGPS Indole-3-glycerol 59.4 93 0.002 25.1 12.0 80 50-142 118-200 (217)
266 PRK04148 hypothetical protein; 59.4 21 0.00045 27.1 4.6 58 28-98 16-73 (134)
267 cd04824 eu_ALAD_PBGS_cysteine_ 59.1 40 0.00087 29.4 6.7 66 61-139 223-288 (320)
268 cd00331 IGPS Indole-3-glycerol 59.1 61 0.0013 26.2 7.7 66 89-157 50-117 (217)
269 PLN02366 spermidine synthase 58.9 1.2E+02 0.0026 26.3 10.2 68 30-108 116-194 (308)
270 PF04131 NanE: Putative N-acet 58.9 34 0.00073 27.6 5.8 69 53-139 45-115 (192)
271 COG0157 NadC Nicotinate-nucleo 58.8 53 0.0011 28.2 7.3 70 85-157 158-229 (280)
272 PRK06106 nicotinate-nucleotide 58.7 1E+02 0.0022 26.6 9.1 91 32-141 167-264 (281)
273 PF03060 NMO: Nitronate monoox 58.6 1E+02 0.0023 26.9 9.5 83 46-143 129-219 (330)
274 cd05013 SIS_RpiR RpiR-like pro 58.4 67 0.0015 23.1 9.2 97 31-146 15-114 (139)
275 PRK05458 guanosine 5'-monophos 58.4 1.3E+02 0.0028 26.4 12.5 98 31-143 113-230 (326)
276 PRK06731 flhF flagellar biosyn 58.3 1.2E+02 0.0025 25.9 10.4 106 30-142 104-218 (270)
277 PRK07114 keto-hydroxyglutarate 58.1 1.1E+02 0.0023 25.4 9.3 93 48-152 11-106 (222)
278 PRK13143 hisH imidazole glycer 58.1 28 0.00061 27.9 5.5 33 30-62 1-33 (200)
279 PRK06849 hypothetical protein; 57.9 1.1E+02 0.0023 27.2 9.7 38 28-65 3-40 (389)
280 PLN02591 tryptophan synthase 57.8 1.1E+02 0.0025 25.6 11.0 99 32-144 110-219 (250)
281 TIGR01425 SRP54_euk signal rec 57.7 1.5E+02 0.0032 27.2 10.5 26 83-108 181-206 (429)
282 KOG2550 IMP dehydrogenase/GMP 57.6 35 0.00076 31.0 6.2 57 81-140 260-317 (503)
283 PF02581 TMP-TENI: Thiamine mo 57.3 93 0.002 24.4 8.3 69 57-141 100-175 (180)
284 PRK07807 inosine 5-monophospha 57.0 31 0.00067 32.0 6.1 57 82-141 237-294 (479)
285 PF01959 DHQS: 3-dehydroquinat 56.9 59 0.0013 28.9 7.5 71 85-159 97-169 (354)
286 COG2265 TrmA SAM-dependent met 56.8 1.3E+02 0.0027 27.6 9.9 98 28-140 314-413 (432)
287 PRK05567 inosine 5'-monophosph 56.7 1.7E+02 0.0036 27.2 12.1 44 100-143 317-360 (486)
288 cd06336 PBP1_ABC_ligand_bindin 56.7 1.3E+02 0.0028 25.9 10.6 66 44-124 157-230 (347)
289 cd00532 MGS-like MGS-like doma 56.6 72 0.0016 22.9 8.3 32 36-67 8-39 (112)
290 PRK04128 1-(5-phosphoribosyl)- 56.4 1.1E+02 0.0025 25.2 9.0 67 87-156 46-117 (228)
291 PF13433 Peripla_BP_5: Peripla 56.4 23 0.00049 31.6 4.9 81 30-123 135-227 (363)
292 cd03804 GT1_wbaZ_like This fam 56.1 1.2E+02 0.0026 25.9 9.5 65 85-160 262-326 (351)
293 PRK04457 spermidine synthase; 55.9 1.2E+02 0.0027 25.4 11.6 69 29-109 90-166 (262)
294 PRK04885 ppnK inorganic polyph 55.8 1.3E+02 0.0028 25.6 9.4 57 84-159 35-92 (265)
295 PRK04180 pyridoxal biosynthesi 55.6 25 0.00055 30.3 4.9 42 98-142 190-233 (293)
296 PRK09283 delta-aminolevulinic 55.6 48 0.001 29.0 6.6 66 60-139 225-290 (323)
297 PRK11557 putative DNA-binding 55.5 98 0.0021 26.0 8.7 84 30-128 131-216 (278)
298 PF07279 DUF1442: Protein of u 55.3 1.2E+02 0.0025 25.1 8.5 66 27-108 68-138 (218)
299 TIGR01306 GMP_reduct_2 guanosi 55.2 39 0.00085 29.6 6.2 55 85-142 109-164 (321)
300 PRK03372 ppnK inorganic polyph 55.1 1.4E+02 0.0031 25.9 11.1 109 30-159 6-127 (306)
301 PRK08072 nicotinate-nucleotide 55.0 1.4E+02 0.0029 25.6 9.3 93 31-142 160-259 (277)
302 PLN02476 O-methyltransferase 54.7 1.4E+02 0.003 25.6 9.7 57 30-93 144-203 (278)
303 PF00478 IMPDH: IMP dehydrogen 54.7 40 0.00086 30.0 6.2 57 84-143 120-177 (352)
304 COG1737 RpiR Transcriptional r 54.0 1.3E+02 0.0027 25.6 9.1 84 29-127 132-217 (281)
305 TIGR01037 pyrD_sub1_fam dihydr 53.9 1.4E+02 0.003 25.5 12.2 49 100-151 223-277 (300)
306 PLN02823 spermine synthase 53.7 1.5E+02 0.0032 26.1 9.6 54 30-95 128-187 (336)
307 PF03102 NeuB: NeuB family; I 53.4 59 0.0013 27.2 6.7 101 42-159 58-169 (241)
308 PRK07765 para-aminobenzoate sy 53.3 39 0.00085 27.5 5.6 32 30-61 1-32 (214)
309 cd06382 PBP1_iGluR_Kainate N-t 53.2 1.4E+02 0.003 25.3 9.4 68 31-111 131-206 (327)
310 PRK14569 D-alanyl-alanine synt 53.2 1.1E+02 0.0024 26.1 8.7 42 40-92 22-64 (296)
311 COG3967 DltE Short-chain dehyd 52.9 87 0.0019 26.0 7.3 78 29-119 5-83 (245)
312 TIGR03590 PseG pseudaminic aci 52.8 1.3E+02 0.0027 25.5 8.9 60 46-123 46-112 (279)
313 PRK13125 trpA tryptophan synth 52.6 88 0.0019 26.0 7.7 56 101-159 64-127 (244)
314 cd01572 QPRTase Quinolinate ph 52.4 65 0.0014 27.4 7.0 54 101-157 170-223 (268)
315 TIGR00262 trpA tryptophan synt 52.4 1.4E+02 0.0031 25.1 10.6 43 99-144 186-228 (256)
316 PRK15482 transcriptional regul 52.4 1.4E+02 0.0031 25.1 9.6 85 30-128 138-223 (285)
317 TIGR01761 thiaz-red thiazoliny 52.1 1.7E+02 0.0037 25.9 11.5 47 114-160 64-114 (343)
318 cd04823 ALAD_PBGS_aspartate_ri 52.1 59 0.0013 28.4 6.6 66 61-140 223-288 (320)
319 PRK14329 (dimethylallyl)adenos 52.0 1.1E+02 0.0024 28.1 8.9 97 36-157 34-138 (467)
320 PLN02589 caffeoyl-CoA O-methyl 51.9 1.4E+02 0.0031 25.0 9.5 59 29-93 104-165 (247)
321 PRK09496 trkA potassium transp 51.9 1.2E+02 0.0027 27.3 9.2 56 83-141 64-122 (453)
322 PRK00994 F420-dependent methyl 51.5 32 0.0007 28.8 4.7 62 81-146 57-118 (277)
323 PRK09016 quinolinate phosphori 51.5 80 0.0017 27.4 7.4 55 100-158 196-250 (296)
324 PRK09922 UDP-D-galactose:(gluc 51.5 1.6E+02 0.0035 25.5 10.3 67 86-161 259-325 (359)
325 PRK10909 rsmD 16S rRNA m(2)G96 51.5 1.3E+02 0.0028 24.3 11.1 82 30-123 77-160 (199)
326 cd01836 FeeA_FeeB_like SGNH_hy 51.4 1.1E+02 0.0024 23.6 8.4 41 81-123 64-115 (191)
327 cd08185 Fe-ADH1 Iron-containin 51.2 1.2E+02 0.0026 27.0 8.8 63 30-106 26-102 (380)
328 COG1091 RfbD dTDP-4-dehydrorha 51.1 41 0.00089 28.9 5.5 55 30-96 1-62 (281)
329 PRK04338 N(2),N(2)-dimethylgua 51.0 1.5E+02 0.0032 26.7 9.3 77 30-125 82-161 (382)
330 PRK07896 nicotinate-nucleotide 50.9 87 0.0019 27.0 7.5 70 85-158 170-241 (289)
331 PRK06935 2-deoxy-D-gluconate 3 50.9 1.4E+02 0.0029 24.4 9.1 34 27-60 13-46 (258)
332 cd04962 GT1_like_5 This family 50.8 1.6E+02 0.0034 25.2 11.3 64 85-158 271-334 (371)
333 PF06925 MGDG_synth: Monogalac 50.7 36 0.00077 26.4 4.8 59 80-144 85-145 (169)
334 PRK13384 delta-aminolevulinic 50.4 68 0.0015 28.0 6.7 65 61-139 227-291 (322)
335 KOG2335 tRNA-dihydrouridine sy 50.3 1.9E+02 0.004 25.8 9.7 104 29-142 117-232 (358)
336 TIGR00089 RNA modification enz 50.0 1E+02 0.0022 27.9 8.3 95 38-157 12-112 (429)
337 cd08187 BDH Butanol dehydrogen 49.8 1.3E+02 0.0028 26.8 8.9 63 30-106 29-105 (382)
338 PRK04452 acetyl-CoA decarbonyl 49.8 1.8E+02 0.0039 25.5 10.5 17 23-39 43-59 (319)
339 COG1748 LYS9 Saccharopine dehy 49.7 2E+02 0.0043 26.0 10.1 92 30-138 2-94 (389)
340 PF09456 RcsC: RcsC Alpha-Beta 49.7 64 0.0014 22.8 5.4 89 33-157 3-91 (92)
341 cd01572 QPRTase Quinolinate ph 49.6 1.6E+02 0.0035 25.0 9.7 92 31-141 154-252 (268)
342 PRK08649 inosine 5-monophospha 49.4 1.9E+02 0.0042 25.8 11.5 56 82-142 152-214 (368)
343 TIGR00308 TRM1 tRNA(guanine-26 49.4 2E+02 0.0042 25.8 10.0 78 30-124 70-149 (374)
344 cd06358 PBP1_NHase Type I peri 49.3 1.6E+02 0.0034 25.2 9.1 77 31-122 134-221 (333)
345 PRK06843 inosine 5-monophospha 49.1 2.1E+02 0.0045 26.0 12.1 30 114-143 256-285 (404)
346 PRK15427 colanic acid biosynth 49.1 2E+02 0.0043 25.7 12.8 66 85-159 299-369 (406)
347 PLN02781 Probable caffeoyl-CoA 49.0 1E+02 0.0022 25.4 7.6 57 30-93 94-153 (234)
348 PRK09522 bifunctional glutamin 48.8 28 0.00061 32.7 4.5 32 30-61 2-33 (531)
349 PRK00536 speE spermidine synth 48.4 1.5E+02 0.0032 25.2 8.5 21 83-104 138-158 (262)
350 PRK09860 putative alcohol dehy 48.2 1.4E+02 0.0031 26.6 8.8 64 30-107 32-108 (383)
351 TIGR00078 nadC nicotinate-nucl 48.1 1E+02 0.0022 26.2 7.4 93 31-142 150-249 (265)
352 COG3010 NanE Putative N-acetyl 48.1 90 0.002 25.7 6.7 70 59-144 134-210 (229)
353 COG0300 DltE Short-chain dehyd 48.0 1.8E+02 0.0038 24.8 9.9 85 27-119 4-89 (265)
354 COG0541 Ffh Signal recognition 47.9 36 0.00079 31.1 4.9 76 29-108 128-206 (451)
355 cd06329 PBP1_SBP_like_3 Peripl 47.8 1.8E+02 0.0039 24.9 10.6 66 41-121 159-234 (342)
356 TIGR00511 ribulose_e2b2 ribose 47.8 1E+02 0.0022 26.6 7.6 81 27-124 139-227 (301)
357 cd01743 GATase1_Anthranilate_S 47.7 49 0.0011 26.0 5.3 30 32-61 1-30 (184)
358 PF11072 DUF2859: Protein of u 47.7 1.3E+02 0.0027 23.2 7.1 69 31-120 64-137 (142)
359 TIGR00888 guaA_Nterm GMP synth 47.4 1E+02 0.0022 24.3 7.1 28 32-59 1-28 (188)
360 COG5012 Predicted cobalamin bi 47.4 74 0.0016 26.4 6.2 97 32-144 109-214 (227)
361 PLN02775 Probable dihydrodipic 47.3 1.9E+02 0.0041 25.0 14.3 116 28-159 10-152 (286)
362 TIGR00381 cdhD CO dehydrogenas 47.3 2.2E+02 0.0047 25.7 10.1 73 84-158 188-262 (389)
363 PRK14076 pnk inorganic polypho 47.2 2.3E+02 0.0049 26.9 10.4 110 27-159 288-403 (569)
364 PRK07428 nicotinate-nucleotide 47.2 1.2E+02 0.0026 26.2 7.8 56 100-158 183-238 (288)
365 PRK14326 (dimethylallyl)adenos 47.2 2.4E+02 0.0053 26.3 10.4 97 36-157 24-128 (502)
366 PLN02316 synthase/transferase 47.1 2.8E+02 0.0061 28.6 11.3 69 85-159 920-997 (1036)
367 TIGR01684 viral_ppase viral ph 46.9 77 0.0017 27.5 6.5 109 29-141 60-189 (301)
368 PRK13146 hisH imidazole glycer 46.8 65 0.0014 26.1 5.9 36 29-64 1-38 (209)
369 PF10672 Methyltrans_SAM: S-ad 46.8 79 0.0017 27.2 6.7 53 30-92 147-203 (286)
370 cd08179 NADPH_BDH NADPH-depend 46.7 1.3E+02 0.0027 26.8 8.2 63 30-106 24-100 (375)
371 PF01008 IF-2B: Initiation fac 46.6 51 0.0011 27.9 5.5 81 27-123 131-219 (282)
372 TIGR01361 DAHP_synth_Bsub phos 46.4 1.8E+02 0.0039 24.5 9.5 62 84-148 160-235 (260)
373 PRK07107 inosine 5-monophospha 46.3 1.6E+02 0.0035 27.6 9.0 30 114-143 352-381 (502)
374 cd03825 GT1_wcfI_like This fam 46.2 85 0.0018 26.6 7.0 75 30-120 1-82 (365)
375 PRK07695 transcriptional regul 46.2 1.5E+02 0.0033 23.6 8.6 54 83-140 114-174 (201)
376 cd06348 PBP1_ABC_ligand_bindin 46.1 1.9E+02 0.0041 24.7 10.7 64 40-118 152-222 (344)
377 PRK01372 ddl D-alanine--D-alan 46.0 56 0.0012 27.7 5.7 40 41-91 24-63 (304)
378 cd06273 PBP1_GntR_like_1 This 46.0 1.4E+02 0.003 24.2 8.0 9 100-108 105-113 (268)
379 TIGR03765 ICE_PFL_4695 integra 45.9 1.1E+02 0.0025 22.1 6.9 69 31-120 26-99 (105)
380 cd08556 GDPD Glycerophosphodie 45.7 1.4E+02 0.003 23.0 8.3 39 99-142 149-187 (189)
381 TIGR03499 FlhF flagellar biosy 45.7 72 0.0016 27.2 6.3 7 85-91 273-279 (282)
382 cd01833 XynB_like SGNH_hydrola 45.6 16 0.00035 27.5 2.1 40 81-122 37-87 (157)
383 PRK15490 Vi polysaccharide bio 45.6 2.8E+02 0.0061 26.5 12.9 59 85-153 473-531 (578)
384 PRK01033 imidazole glycerol ph 45.6 1.3E+02 0.0029 25.2 7.8 54 86-142 168-225 (258)
385 PRK10538 malonic semialdehyde 45.6 1.3E+02 0.0029 24.3 7.8 35 30-64 1-35 (248)
386 PRK07455 keto-hydroxyglutarate 45.5 1.5E+02 0.0033 23.5 7.8 65 59-141 112-178 (187)
387 PRK08535 translation initiatio 45.4 1.3E+02 0.0029 26.1 7.9 81 27-124 144-232 (310)
388 cd06355 PBP1_FmdD_like Peripla 45.4 1.9E+02 0.0042 24.9 9.1 69 30-111 134-213 (348)
389 cd01568 QPRTase_NadC Quinolina 45.4 1.1E+02 0.0024 25.9 7.3 55 101-158 169-223 (269)
390 cd00384 ALAD_PBGS Porphobilino 45.4 88 0.0019 27.3 6.6 64 61-138 218-281 (314)
391 PRK01581 speE spermidine synth 45.4 2.1E+02 0.0045 25.8 9.1 68 30-109 175-257 (374)
392 cd06326 PBP1_STKc_like Type I 45.4 1.9E+02 0.0041 24.5 10.8 69 42-125 153-228 (336)
393 COG0352 ThiE Thiamine monophos 45.3 1.7E+02 0.0037 24.0 9.2 68 59-142 111-185 (211)
394 PRK10416 signal recognition pa 45.3 2.1E+02 0.0045 25.0 10.3 12 82-93 194-205 (318)
395 cd08176 LPO Lactadehyde:propan 45.1 1.8E+02 0.0039 25.8 9.0 63 30-106 29-104 (377)
396 PRK08072 nicotinate-nucleotide 45.0 1E+02 0.0022 26.5 7.0 70 85-157 158-229 (277)
397 cd00381 IMPDH IMPDH: The catal 45.0 2.1E+02 0.0046 25.0 11.1 29 114-142 197-225 (325)
398 PF04309 G3P_antiterm: Glycero 45.0 18 0.00039 28.8 2.3 54 81-141 114-167 (175)
399 PRK02155 ppnK NAD(+)/NADH kina 44.9 2E+02 0.0044 24.7 10.6 106 31-158 7-117 (291)
400 TIGR00735 hisF imidazoleglycer 44.6 90 0.002 26.0 6.6 56 86-144 46-104 (254)
401 KOG1203 Predicted dehydrogenas 44.6 1.1E+02 0.0023 27.9 7.3 75 25-110 75-150 (411)
402 cd03115 SRP The signal recogni 44.5 87 0.0019 24.1 6.2 57 29-93 28-91 (173)
403 cd06343 PBP1_ABC_ligand_bindin 44.3 2.1E+02 0.0045 24.7 10.2 57 42-111 161-224 (362)
404 PF13659 Methyltransf_26: Meth 44.3 91 0.002 21.9 5.9 56 29-95 23-81 (117)
405 PRK14607 bifunctional glutamin 44.3 31 0.00067 32.4 4.1 75 31-121 1-80 (534)
406 TIGR01823 PabB-fungal aminodeo 44.1 1.1E+02 0.0024 30.2 7.9 82 27-121 3-93 (742)
407 PRK11337 DNA-binding transcrip 44.1 2E+02 0.0043 24.3 9.1 83 32-128 145-228 (292)
408 KOG0780 Signal recognition par 44.0 77 0.0017 28.8 6.2 29 80-108 179-207 (483)
409 PRK05848 nicotinate-nucleotide 43.9 94 0.002 26.5 6.6 55 100-157 169-223 (273)
410 cd02940 DHPD_FMN Dihydropyrimi 43.8 2.1E+02 0.0045 24.5 9.3 42 100-142 239-280 (299)
411 PRK03612 spermidine synthase; 43.7 1.6E+02 0.0035 27.5 8.8 68 30-109 322-404 (521)
412 PRK14330 (dimethylallyl)adenos 43.6 1.2E+02 0.0025 27.7 7.6 96 38-157 13-112 (434)
413 TIGR00078 nadC nicotinate-nucl 43.5 1.3E+02 0.0029 25.5 7.5 54 101-157 166-219 (265)
414 PRK05742 nicotinate-nucleotide 43.4 1.4E+02 0.0029 25.6 7.5 69 85-157 160-230 (277)
415 PRK08335 translation initiatio 43.4 1.6E+02 0.0034 25.3 7.9 81 27-124 133-221 (275)
416 cd04951 GT1_WbdM_like This fam 43.1 2E+02 0.0044 24.2 9.7 62 85-158 263-324 (360)
417 cd06318 PBP1_ABC_sugar_binding 43.1 1.7E+02 0.0036 24.0 8.1 62 43-121 19-87 (282)
418 PRK08385 nicotinate-nucleotide 43.1 1.2E+02 0.0027 25.9 7.2 65 91-159 161-225 (278)
419 PRK10867 signal recognition pa 43.0 2E+02 0.0043 26.4 8.9 12 82-93 181-192 (433)
420 cd06296 PBP1_CatR_like Ligand- 42.9 1.6E+02 0.0036 23.8 8.0 8 85-92 79-86 (270)
421 TIGR01334 modD putative molybd 42.9 1.3E+02 0.0029 25.7 7.4 55 100-158 176-230 (277)
422 COG1465 Predicted alternative 42.7 1.1E+02 0.0024 26.6 6.7 55 101-159 136-191 (376)
423 PRK06559 nicotinate-nucleotide 42.7 1E+02 0.0022 26.6 6.7 56 100-158 184-239 (290)
424 cd02812 PcrB_like PcrB_like pr 42.7 1.5E+02 0.0033 24.4 7.5 59 85-146 149-207 (219)
425 cd06282 PBP1_GntR_like_2 Ligan 42.5 1.7E+02 0.0036 23.6 7.9 10 49-58 25-34 (266)
426 cd04731 HisF The cyclase subun 42.4 72 0.0016 26.3 5.7 54 87-143 44-100 (243)
427 PLN02778 3,5-epimerase/4-reduc 42.3 1.3E+02 0.0027 25.7 7.3 33 26-58 6-38 (298)
428 TIGR03669 urea_ABC_arch urea A 42.0 1.7E+02 0.0038 25.8 8.4 73 31-118 135-218 (374)
429 TIGR01859 fruc_bis_ald_ fructo 41.9 1.1E+02 0.0025 26.1 6.9 70 60-144 153-231 (282)
430 KOG3111 D-ribulose-5-phosphate 41.8 1.9E+02 0.0041 23.7 7.5 56 84-142 134-196 (224)
431 cd06345 PBP1_ABC_ligand_bindin 41.7 2.2E+02 0.0048 24.3 10.7 65 42-121 161-232 (344)
432 TIGR02085 meth_trns_rumB 23S r 41.7 2.5E+02 0.0055 24.9 11.0 89 30-135 256-346 (374)
433 PF06283 ThuA: Trehalose utili 41.7 88 0.0019 25.3 6.0 76 31-121 1-88 (217)
434 COG0647 NagD Predicted sugar p 41.4 90 0.002 26.6 6.1 39 83-125 6-51 (269)
435 cd03146 GAT1_Peptidase_E Type 41.4 1.9E+02 0.0041 23.4 8.1 66 27-109 29-101 (212)
436 COG1908 FrhD Coenzyme F420-red 41.4 87 0.0019 23.4 5.1 50 99-149 15-66 (132)
437 TIGR00417 speE spermidine synt 41.3 2.2E+02 0.0047 24.0 10.3 52 31-95 98-156 (270)
438 PRK06444 prephenate dehydrogen 41.3 61 0.0013 26.2 4.9 29 30-58 1-29 (197)
439 TIGR00524 eIF-2B_rel eIF-2B al 41.2 1.3E+02 0.0028 26.1 7.2 83 27-124 150-241 (303)
440 cd01573 modD_like ModD; Quinol 41.1 1E+02 0.0022 26.3 6.4 55 100-158 171-225 (272)
441 cd04726 KGPDC_HPS 3-Keto-L-gul 41.1 1.2E+02 0.0025 24.0 6.6 13 130-142 71-83 (202)
442 PRK06552 keto-hydroxyglutarate 41.0 2E+02 0.0043 23.5 8.2 76 48-141 104-181 (213)
443 PRK06978 nicotinate-nucleotide 40.9 1.3E+02 0.0028 26.1 7.0 70 85-158 176-247 (294)
444 COG1184 GCD2 Translation initi 40.8 75 0.0016 27.6 5.5 80 53-143 120-201 (301)
445 PRK03692 putative UDP-N-acetyl 40.8 1.2E+02 0.0027 25.3 6.8 70 27-109 103-180 (243)
446 PRK02083 imidazole glycerol ph 40.8 2.1E+02 0.0046 23.7 10.1 56 84-142 166-226 (253)
447 TIGR00735 hisF imidazoleglycer 40.7 2.1E+02 0.0046 23.8 10.0 40 100-142 188-228 (254)
448 cd08181 PPD-like 1,3-propanedi 40.7 2.6E+02 0.0055 24.6 10.0 63 30-106 26-102 (357)
449 PRK13609 diacylglycerol glucos 40.6 2.5E+02 0.0054 24.5 10.8 61 85-158 274-336 (380)
450 PLN02819 lysine-ketoglutarate 40.6 4.3E+02 0.0094 27.3 11.8 113 28-159 568-694 (1042)
451 PRK06096 molybdenum transport 40.5 1.5E+02 0.0033 25.5 7.4 54 101-158 178-231 (284)
452 KOG1429 dTDP-glucose 4-6-dehyd 40.2 80 0.0017 27.5 5.5 71 28-104 26-96 (350)
453 TIGR01302 IMP_dehydrog inosine 40.1 3E+02 0.0064 25.2 11.6 31 114-144 327-357 (450)
454 PRK07764 DNA polymerase III su 40.1 1.2E+02 0.0025 30.3 7.5 71 83-157 119-191 (824)
455 PRK08335 translation initiatio 40.1 2.4E+02 0.0051 24.2 8.5 87 53-150 110-198 (275)
456 cd06281 PBP1_LacI_like_5 Ligan 40.0 2E+02 0.0043 23.4 8.1 21 99-122 104-124 (269)
457 cd06295 PBP1_CelR Ligand bindi 39.9 2E+02 0.0042 23.5 8.0 17 43-59 30-46 (275)
458 cd08189 Fe-ADH5 Iron-containin 39.8 2.3E+02 0.005 25.1 8.8 63 30-106 27-102 (374)
459 PRK03522 rumB 23S rRNA methylu 39.8 2.5E+02 0.0053 24.2 10.1 68 30-110 196-265 (315)
460 cd03818 GT1_ExpC_like This fam 39.6 2.6E+02 0.0057 24.5 11.1 65 85-159 301-365 (396)
461 TIGR01163 rpe ribulose-phospha 39.6 1.9E+02 0.0041 22.8 9.3 57 98-157 43-100 (210)
462 cd06366 PBP1_GABAb_receptor Li 39.6 2.3E+02 0.0051 24.2 8.7 58 41-111 151-217 (350)
463 cd06292 PBP1_LacI_like_10 Liga 39.4 1.5E+02 0.0031 24.2 7.1 7 86-92 85-91 (273)
464 PRK05742 nicotinate-nucleotide 39.4 1.9E+02 0.0041 24.8 7.8 67 57-142 194-260 (277)
465 PRK10537 voltage-gated potassi 39.4 2.5E+02 0.0054 25.3 8.9 107 29-143 240-356 (393)
466 TIGR03569 NeuB_NnaB N-acetylne 39.1 1.9E+02 0.0041 25.4 7.9 102 41-159 77-191 (329)
467 PRK01231 ppnK inorganic polyph 39.0 2.5E+02 0.0055 24.1 10.5 107 31-159 6-117 (295)
468 TIGR00512 salvage_mtnA S-methy 38.8 1.8E+02 0.0038 25.7 7.7 83 27-124 178-269 (331)
469 cd01825 SGNH_hydrolase_peri1 S 38.6 75 0.0016 24.4 5.0 41 81-123 53-105 (189)
470 cd01575 PBP1_GntR Ligand-bindi 38.6 2E+02 0.0044 23.1 7.9 10 99-108 104-113 (268)
471 PF01380 SIS: SIS domain SIS d 38.6 1E+02 0.0022 22.1 5.4 100 31-149 7-110 (131)
472 cd08563 GDPD_TtGDE_like Glycer 38.6 2.1E+02 0.0046 23.1 8.1 37 101-142 191-227 (230)
473 cd04732 HisA HisA. Phosphorib 38.3 50 0.0011 26.9 4.1 53 87-142 163-218 (234)
474 PF00448 SRP54: SRP54-type pro 38.3 1.4E+02 0.0031 23.9 6.6 110 39-157 42-163 (196)
475 PF02844 GARS_N: Phosphoribosy 38.3 74 0.0016 22.8 4.4 30 30-59 1-31 (100)
476 PF00977 His_biosynth: Histidi 38.3 1E+02 0.0023 25.3 6.0 54 86-142 163-219 (229)
477 cd06389 PBP1_iGluR_AMPA_GluR2 38.2 2.8E+02 0.006 24.4 10.8 29 81-111 173-201 (370)
478 cd03820 GT1_amsD_like This fam 38.2 2.2E+02 0.0048 23.2 12.0 65 85-158 253-317 (348)
479 TIGR02990 ectoine_eutA ectoine 38.2 2.4E+02 0.0051 23.5 9.4 76 30-118 121-210 (239)
480 PLN02889 oxo-acid-lyase/anthra 38.1 1.1E+02 0.0023 31.0 6.8 33 29-61 81-114 (918)
481 PRK09776 putative diguanylate 38.0 1.5E+02 0.0031 30.1 8.1 96 45-152 979-1085(1092)
482 PRK05581 ribulose-phosphate 3- 37.9 2.1E+02 0.0045 22.9 9.8 59 85-143 132-198 (220)
483 COG2247 LytB Putative cell wal 37.9 2.8E+02 0.0061 24.4 8.5 33 27-59 74-106 (337)
484 COG3172 NadR Predicted ATPase/ 37.8 2.1E+02 0.0045 22.8 8.0 23 30-52 79-101 (187)
485 PRK00103 rRNA large subunit me 37.7 1.9E+02 0.0042 22.4 9.6 80 29-109 2-92 (157)
486 PRK11572 copper homeostasis pr 37.4 2.5E+02 0.0055 23.7 8.4 92 37-142 98-197 (248)
487 PF01993 MTD: methylene-5,6,7, 37.1 58 0.0013 27.4 4.1 61 82-146 57-117 (276)
488 cd04722 TIM_phosphate_binding 36.9 1.5E+02 0.0032 22.6 6.5 56 84-142 136-198 (200)
489 PF13941 MutL: MutL protein 36.9 3.5E+02 0.0075 25.1 11.7 106 27-145 74-187 (457)
490 cd06279 PBP1_LacI_like_3 Ligan 36.9 2.2E+02 0.0048 23.4 7.9 15 45-59 26-40 (283)
491 PRK04128 1-(5-phosphoribosyl)- 36.8 1.5E+02 0.0033 24.4 6.7 52 86-142 158-210 (228)
492 PRK14188 bifunctional 5,10-met 36.7 1.4E+02 0.003 25.9 6.6 35 26-60 155-189 (296)
493 COG0113 HemB Delta-aminolevuli 36.7 1.5E+02 0.0033 25.8 6.7 63 61-137 231-293 (330)
494 PRK07455 keto-hydroxyglutarate 36.6 2.2E+02 0.0047 22.6 8.8 89 49-150 9-98 (187)
495 COG1411 Uncharacterized protei 36.6 2.1E+02 0.0045 23.5 7.0 60 82-144 149-211 (229)
496 PLN02645 phosphoglycolate phos 36.5 1.2E+02 0.0026 26.1 6.3 50 84-137 27-86 (311)
497 cd08562 GDPD_EcUgpQ_like Glyce 36.4 2.3E+02 0.0049 22.8 9.0 37 101-142 190-226 (229)
498 cd06272 PBP1_hexuronate_repres 36.3 2.1E+02 0.0046 23.0 7.7 63 40-120 16-80 (261)
499 PRK06124 gluconate 5-dehydroge 36.2 2.1E+02 0.0046 23.1 7.6 69 20-93 2-70 (256)
500 COG0118 HisH Glutamine amidotr 36.2 1.3E+02 0.0028 24.5 5.9 45 29-90 1-45 (204)
No 1
>COG0745 OmpR Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription]
Probab=99.91 E-value=3.1e-23 Score=172.09 Aligned_cols=119 Identities=21% Similarity=0.349 Sum_probs=108.7
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhcCCEEEEECCHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCCCCCHHHHHHHHhcc
Q 026776 30 VHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKKIKDS 109 (233)
Q Consensus 30 ~~ILIVddd~~~~~~l~~~L~~~g~~v~~a~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp~~~g~~ll~~Lr~~ 109 (233)
++|||||||+..+..+..+|+..||+|..+.++.++++.+ ... ||+||+|++||+++|+++|++||+.
T Consensus 1 ~~ILiveDd~~i~~~l~~~L~~~g~~v~~~~~~~~a~~~~-----------~~~-~dlviLD~~lP~~dG~~~~~~iR~~ 68 (229)
T COG0745 1 MRILLVEDDPELAELLKEYLEEEGYEVDVAADGEEALEAA-----------REQ-PDLVLLDLMLPDLDGLELCRRLRAK 68 (229)
T ss_pred CeEEEEcCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHH-----------hcC-CCEEEEECCCCCCCHHHHHHHHHhh
Confidence 5799999999999999999999999999999999999998 556 9999999999999999999999965
Q ss_pred CCCCCCcEEEEeCCCcHHHHHHHHHcCCceEEeCCCCHHHHHHHHHHHhhhh
Q 026776 110 SALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVKLSDVKRIKDYLTRDV 161 (233)
Q Consensus 110 ~~~~~~piIvlt~~~~~~~~~~al~~Ga~dyL~KP~~~~eL~~~~~~l~~~~ 161 (233)
....+|||++|+..+......++++|||||+.|||++.||...++.+.|+.
T Consensus 69 -~~~~~PIi~Lta~~~~~d~v~gl~~GADDYl~KPf~~~EL~ARi~a~lRR~ 119 (229)
T COG0745 69 -KGSGPPIIVLTARDDEEDRVLGLEAGADDYLTKPFSPRELLARLRALLRRN 119 (229)
T ss_pred -cCCCCcEEEEECCCcHHHHHHHHhCcCCeeeeCCCCHHHHHHHHHHHHCcC
Confidence 445889999999999999999999999999999999999976666665544
No 2
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=99.87 E-value=1.7e-21 Score=174.05 Aligned_cols=122 Identities=32% Similarity=0.482 Sum_probs=111.8
Q ss_pred CcEEEEEeCCHHHHHHHHHHHhhcCCEEEEECCHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCCCCCHHHHHHHHhc
Q 026776 29 EVHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKKIKD 108 (233)
Q Consensus 29 ~~~ILIVddd~~~~~~l~~~L~~~g~~v~~a~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp~~~g~~ll~~Lr~ 108 (233)
..+||||||+...+..+...|+..||.|..+.++.+|++++. ...+|+||+|+.||++||+++++.+++
T Consensus 4 ~~~iLvVDDd~~ir~~l~~~L~~~G~~v~~a~~~~~al~~i~-----------~~~~~lvl~Di~mp~~~Gl~ll~~i~~ 72 (464)
T COG2204 4 MARILVVDDDPDIRELLEQALELAGYEVVTAESAEEALEALS-----------ESPFDLVLLDIRMPGMDGLELLKEIKS 72 (464)
T ss_pred cCCEEEEeCCHHHHHHHHHHHHHcCCeEEEeCCHHHHHHHHh-----------cCCCCEEEEecCCCCCchHHHHHHHHh
Confidence 456999999999999999999999999999999999999993 347999999999999999999999999
Q ss_pred cCCCCCCcEEEEeCCCcHHHHHHHHHcCCceEEeCCCCHHHHHHHHHHHhhhhhc
Q 026776 109 SSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVKLSDVKRIKDYLTRDVNL 163 (233)
Q Consensus 109 ~~~~~~~piIvlt~~~~~~~~~~al~~Ga~dyL~KP~~~~eL~~~~~~l~~~~~~ 163 (233)
..+ .+|+|++|++++.+.+++|++.||.|||.|||+.++|..++++.......
T Consensus 73 ~~~--~~pVI~~Tg~g~i~~AV~A~k~GA~Dfl~KP~~~~~L~~~v~ral~~~~~ 125 (464)
T COG2204 73 RDP--DLPVIVMTGHGDIDTAVEALRLGAFDFLEKPFDLDRLLAIVERALELREL 125 (464)
T ss_pred hCC--CCCEEEEeCCCCHHHHHHHHhcCcceeeeCCCCHHHHHHHHHHHHHHhhh
Confidence 876 99999999999999999999999999999999999998777766654443
No 3
>COG4753 Response regulator containing CheY-like receiver domain and AraC-type DNA-binding domain [Signal transduction mechanisms]
Probab=99.85 E-value=9.1e-21 Score=169.28 Aligned_cols=120 Identities=27% Similarity=0.497 Sum_probs=108.4
Q ss_pred cEEEEEeCCHHHHHHHHHHHh--hcCCEE-EEECCHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCCCCCHHHHHHHH
Q 026776 30 VHVLAVDDSFVDRKVIERLLT--ISSCKV-TAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKKI 106 (233)
Q Consensus 30 ~~ILIVddd~~~~~~l~~~L~--~~g~~v-~~a~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp~~~g~~ll~~L 106 (233)
.+||||||++..|++|+.++. ..|+++ ..|.||.+|++.+ ...+|||||+|++||+|||+++++.+
T Consensus 2 ykVlIVDDE~lIr~GLk~lI~w~~~g~eiVgtA~NG~eAleli-----------~e~~pDiviTDI~MP~mdGLdLI~~i 70 (475)
T COG4753 2 YKVLIVDDEPLIREGLKSLIDWEALGIEVVGTAANGKEALELI-----------QETQPDIVITDINMPGMDGLDLIKAI 70 (475)
T ss_pred eeEEEecChHHHHHHHHHhCChhhcCCeEEEecccHHHHHHHH-----------HhcCCCEEEEecCCCCCcHHHHHHHH
Confidence 589999999999999999984 567755 5699999999999 67789999999999999999999999
Q ss_pred hccCCCCCCcEEEEeCCCcHHHHHHHHHcCCceEEeCCCCHHHHHHHHHHHhhhhh
Q 026776 107 KDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVKLSDVKRIKDYLTRDVN 162 (233)
Q Consensus 107 r~~~~~~~~piIvlt~~~~~~~~~~al~~Ga~dyL~KP~~~~eL~~~~~~l~~~~~ 162 (233)
++..+ .+.+|++|++.+.+++..|++.|+.|||+||++-++|..++..+...+.
T Consensus 71 ke~~p--~~~~IILSGy~eFeYak~Am~lGV~dYLLKP~~k~eL~~~L~ki~~kl~ 124 (475)
T COG4753 71 KEQSP--DTEFIILSGYDEFEYAKKAMKLGVKDYLLKPVDKAELEEALKKIIGKLE 124 (475)
T ss_pred HHhCC--CceEEEEeccchhHHHHHHHhcCchhheeCcCCHHHHHHHHHHHHHHHH
Confidence 99776 9999999999999999999999999999999999999877776665443
No 4
>COG4566 TtrR Response regulator [Signal transduction mechanisms]
Probab=99.85 E-value=1.7e-20 Score=147.35 Aligned_cols=118 Identities=24% Similarity=0.332 Sum_probs=107.9
Q ss_pred CcEEEEEeCCHHHHHHHHHHHhhcCCEEEEECCHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCCCCCHHHHHHHHhc
Q 026776 29 EVHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKKIKD 108 (233)
Q Consensus 29 ~~~ILIVddd~~~~~~l~~~L~~~g~~v~~a~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp~~~g~~ll~~Lr~ 108 (233)
..-|.|||||..+++.+..+|+..||.+.++.++.+.+... ....|-|+|+|+.||+++|.++.+.|.+
T Consensus 4 ~~~V~vVDDD~~vr~al~~Ll~s~G~~v~~~~s~~~fL~~~-----------~~~~pGclllDvrMPg~sGlelq~~L~~ 72 (202)
T COG4566 4 EPLVHVVDDDESVRDALAFLLESAGFQVKCFASAEEFLAAA-----------PLDRPGCLLLDVRMPGMSGLELQDRLAE 72 (202)
T ss_pred CCeEEEEcCcHHHHHHHHHHHHhCCceeeeecCHHHHHhhc-----------cCCCCCeEEEecCCCCCchHHHHHHHHh
Confidence 45689999999999999999999999999999999999875 4567899999999999999999999999
Q ss_pred cCCCCCCcEEEEeCCCcHHHHHHHHHcCCceEEeCCCCHHHHHHHHHHHhh
Q 026776 109 SSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVKLSDVKRIKDYLTR 159 (233)
Q Consensus 109 ~~~~~~~piIvlt~~~~~~~~~~al~~Ga~dyL~KP~~~~eL~~~~~~l~~ 159 (233)
... ..|||++|++++.....++++.||.|||.||++.+.|..++.+..+
T Consensus 73 ~~~--~~PVIfiTGhgDIpmaV~AmK~GAvDFLeKP~~~q~Lldav~~Al~ 121 (202)
T COG4566 73 RGI--RLPVIFLTGHGDIPMAVQAMKAGAVDFLEKPFSEQDLLDAVERALA 121 (202)
T ss_pred cCC--CCCEEEEeCCCChHHHHHHHHcchhhHHhCCCchHHHHHHHHHHHH
Confidence 876 9999999999999999999999999999999999998766655443
No 5
>PF00072 Response_reg: Response regulator receiver domain; InterPro: IPR001789 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. Bipartite response regulator proteins are involved in a two-component signal transduction system in bacteria, and certain eukaryotes like protozoa, that functions to detect and respond to environmental changes []. These systems have been detected during host invasion, drug resistance, motility, phosphate uptake, osmoregulation, and nitrogen fixation, amongst others []. The two-component system consists of a histidine protein kinase environmental sensor that phosphorylates the receiver domain of a response regulator protein; phosphorylation induces a conformational change in the response regulator, which activates the effector domain, triggering the cellular response []. The domains of the two-component proteins are highly modular, but the core structures and activities are maintained. The response regulators act as phosphorylation-activated switches to affect a cellular response, usually by transcriptional regulation. Most of these proteins consist of two domains, an N-terminal response regulator receiver domain, and a variable C-terminal effector domain with DNA-binding activity. This entry represents the response regulator receiver domain, which belongs to the CheY family, and receives the signal from the sensor partner in the two-component system.; GO: 0000156 two-component response regulator activity, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent; PDB: 2QR3_A 2QXY_A 1I3C_A 1JLK_A 2PKX_A 2PL1_A 3H1F_A 3H1E_A 3GWG_A 3H1G_A ....
Probab=99.84 E-value=8.3e-20 Score=133.94 Aligned_cols=110 Identities=32% Similarity=0.555 Sum_probs=103.5
Q ss_pred EEEEeCCHHHHHHHHHHHhhcCC-EEEEECCHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCCCCCHHHHHHHHhccC
Q 026776 32 VLAVDDSFVDRKVIERLLTISSC-KVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKKIKDSS 110 (233)
Q Consensus 32 ILIVddd~~~~~~l~~~L~~~g~-~v~~a~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp~~~g~~ll~~Lr~~~ 110 (233)
||||||++..+..++.+|+..|+ .+..+.++.++++.+ ....||+||+|+.|++++|+++++.|+...
T Consensus 1 Ilivd~~~~~~~~l~~~l~~~~~~~v~~~~~~~~~~~~~-----------~~~~~d~iiid~~~~~~~~~~~~~~i~~~~ 69 (112)
T PF00072_consen 1 ILIVDDDPEIRELLEKLLERAGYEEVTTASSGEEALELL-----------KKHPPDLIIIDLELPDGDGLELLEQIRQIN 69 (112)
T ss_dssp EEEEESSHHHHHHHHHHHHHTTEEEEEEESSHHHHHHHH-----------HHSTESEEEEESSSSSSBHHHHHHHHHHHT
T ss_pred cEEEECCHHHHHHHHHHHHhCCCCEEEEECCHHHHHHHh-----------cccCceEEEEEeeecccccccccccccccc
Confidence 79999999999999999999999 999999999999999 456799999999999999999999999887
Q ss_pred CCCCCcEEEEeCCCcHHHHHHHHHcCCceEEeCCCCHHHHHHHH
Q 026776 111 ALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVKLSDVKRIK 154 (233)
Q Consensus 111 ~~~~~piIvlt~~~~~~~~~~al~~Ga~dyL~KP~~~~eL~~~~ 154 (233)
+ .+++|+++...+.....+++++|+++||.||++.++|.+.+
T Consensus 70 ~--~~~ii~~t~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i 111 (112)
T PF00072_consen 70 P--SIPIIVVTDEDDSDEVQEALRAGADDYLSKPFSPEELRAAI 111 (112)
T ss_dssp T--TSEEEEEESSTSHHHHHHHHHTTESEEEESSSSHHHHHHHH
T ss_pred c--cccEEEecCCCCHHHHHHHHHCCCCEEEECCCCHHHHHHhh
Confidence 4 99999999999999999999999999999999999997765
No 6
>PLN03029 type-a response regulator protein; Provisional
Probab=99.84 E-value=1.9e-19 Score=148.99 Aligned_cols=134 Identities=63% Similarity=1.022 Sum_probs=110.4
Q ss_pred CCCCcEEEEEeCCHHHHHHHHHHHhhcCCEEEEECCHHHHHHHhhhhhhhh---------ccCCCCCcccEEEEcCCCCC
Q 026776 26 DTEEVHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQS---------INGFDGLKVDLIITDYCMPG 96 (233)
Q Consensus 26 ~~~~~~ILIVddd~~~~~~l~~~L~~~g~~v~~a~~~~~al~~l~~~~~~~---------~~~~~~~~~DlvllD~~mp~ 96 (233)
...+++||||||+...+..+..+|+..||.+..+.++.+++..+....... .+......+|+||+|+.||+
T Consensus 5 ~~~~~~VLiVdd~~~~~~~l~~~L~~~g~~v~~a~sg~~al~~l~~~~~d~~~p~~~~~~~~~~~~~~~dlVllD~~mp~ 84 (222)
T PLN03029 5 TESQFHVLAVDDSLIDRKLIEKLLKTSSYQVTTVDSGSKALKFLGLHEDDRSNPDTPSVSPNSHQEVEVNLIITDYCMPG 84 (222)
T ss_pred CCCCccEEEEeCCHHHHHHHHHHHHHcCceEEEECCHHHHHHHHHhccccccccccccccccccccccCCEEEEcCCCCC
Confidence 346799999999999999999999999999999999999999874211000 00001235789999999999
Q ss_pred CCHHHHHHHHhccCCCCCCcEEEEeCCCcHHHHHHHHHcCCceEEeCCCCHHHHHHHHHHHhh
Q 026776 97 MTGYELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVKLSDVKRIKDYLTR 159 (233)
Q Consensus 97 ~~g~~ll~~Lr~~~~~~~~piIvlt~~~~~~~~~~al~~Ga~dyL~KP~~~~eL~~~~~~l~~ 159 (233)
++|+++++.|++......+|+|++++........++++.|+++||.||++..+|.++...+.+
T Consensus 85 ~~G~e~l~~ir~~~~~~~ipvIils~~~~~~~~~~al~~Ga~dyl~KP~~~~~L~~l~~~~~~ 147 (222)
T PLN03029 85 MTGYDLLKKIKESSSLRNIPVVIMSSENVPSRITRCLEEGAEEFFLKPVQLSDLNRLKPHMMK 147 (222)
T ss_pred CCHHHHHHHHHhccccCCCcEEEEeCCCCHHHHHHHHHhCchheEECCCCHHHHHHHHHHHHH
Confidence 999999999998654458899999999988989999999999999999999999777665544
No 7
>COG4565 CitB Response regulator of citrate/malate metabolism [Transcription / Signal transduction mechanisms]
Probab=99.84 E-value=5e-20 Score=147.33 Aligned_cols=121 Identities=20% Similarity=0.371 Sum_probs=107.8
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhc-CC-EEEEECCHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCCCCCHHHHHHHHh
Q 026776 30 VHVLAVDDSFVDRKVIERLLTIS-SC-KVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKKIK 107 (233)
Q Consensus 30 ~~ILIVddd~~~~~~l~~~L~~~-g~-~v~~a~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp~~~g~~ll~~Lr 107 (233)
++|||||||+.+.+.-+.+++.. || .|..+.++++|...+ ....||+||+|+-||+.+|++++.+||
T Consensus 1 i~VLIiEDD~mVaeih~~yv~~~~gF~~vg~A~~~~ea~~~i-----------~~~~pDLILLDiYmPd~~Gi~lL~~ir 69 (224)
T COG4565 1 INVLIIEDDPMVAEIHRRYVKQIPGFSVVGTAGTLEEAKMII-----------EEFKPDLILLDIYMPDGNGIELLPELR 69 (224)
T ss_pred CcEEEEcCchHHHHHHHHHHHhCCCceEEEeeccHHHHHHHH-----------HhhCCCEEEEeeccCCCccHHHHHHHH
Confidence 58999999999999999999876 66 455789999999999 566789999999999999999999999
Q ss_pred ccCCCCCCcEEEEeCCCcHHHHHHHHHcCCceEEeCCCCHHHHHHHHHHHhhhhhc
Q 026776 108 DSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVKLSDVKRIKDYLTRDVNL 163 (233)
Q Consensus 108 ~~~~~~~~piIvlt~~~~~~~~~~al~~Ga~dyL~KP~~~~eL~~~~~~l~~~~~~ 163 (233)
+... .+-||++|+-.+.+.+.++++.|+.|||.|||..+.|...+....+....
T Consensus 70 ~~~~--~~DVI~iTAA~d~~tI~~alr~Gv~DYLiKPf~~eRl~~aL~~y~~~r~~ 123 (224)
T COG4565 70 SQHY--PVDVIVITAASDMETIKEALRYGVVDYLIKPFTFERLQQALTRYRQKRHA 123 (224)
T ss_pred hcCC--CCCEEEEeccchHHHHHHHHhcCchhheecceeHHHHHHHHHHHHHHHHH
Confidence 8766 88999999999999999999999999999999999998777766654433
No 8
>COG3437 Response regulator containing a CheY-like receiver domain and an HD-GYP domain [Transcription / Signal transduction mechanisms]
Probab=99.82 E-value=1.2e-19 Score=155.29 Aligned_cols=125 Identities=30% Similarity=0.476 Sum_probs=113.2
Q ss_pred ccCCCCCCCCCcEEEEEeCCHHHHHHHHHHHhhcCCEEEEECCHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCCCCC
Q 026776 19 GFDLSPSDTEEVHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMT 98 (233)
Q Consensus 19 ~~~~~~~~~~~~~ILIVddd~~~~~~l~~~L~~~g~~v~~a~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp~~~ 98 (233)
.+.++....++++||+|||++..+..+..+|+..||++..+++|+++++.. ..+.+|+||+|++||+|+
T Consensus 4 ~~~~~~~~~~~~~vl~vDD~~~~~~~~~~lL~~~~y~v~~ae~g~~a~kl~-----------~~~~~dlvllD~~mp~md 72 (360)
T COG3437 4 SMQGKNEPDEKLTVLLVDDEPDNLEALRQLLRMIGYRVIEAENGEEALKLL-----------QEEPPDLVLLDVRMPEMD 72 (360)
T ss_pred ccCCCCCCcccceEEEecCchhHHHHHHHHHHhcccceeeecCchHHHHHh-----------cccCCceEEeeccCCCcc
Confidence 344555566789999999999999999999999999999999999999988 556699999999999999
Q ss_pred HHHHHHHHhc-cCCCCCCcEEEEeCCCcHHHHHHHHHcCCceEEeCCCCHHHHHHHH
Q 026776 99 GYELLKKIKD-SSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVKLSDVKRIK 154 (233)
Q Consensus 99 g~~ll~~Lr~-~~~~~~~piIvlt~~~~~~~~~~al~~Ga~dyL~KP~~~~eL~~~~ 154 (233)
|+++|.+|+. .+.+..+|+|++|+..+.+...+++..|+++||.||+++.+|...+
T Consensus 73 g~ev~~~lk~~~p~t~~ip~i~lT~~~d~~~~~~~~~~g~~dyl~KP~~~~~l~~rv 129 (360)
T COG3437 73 GAEVLNKLKAMSPSTRRIPVILLTAYADSEDRQRALEAGADDYLSKPISPKELVARV 129 (360)
T ss_pred HHHHHHHHHhcCCcccccceEEEeecCChHHHHHHHHhhHHHHhcCCCCHHHHHHHH
Confidence 9999999999 6667789999999999999999999999999999999998886544
No 9
>COG2197 CitB Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription]
Probab=99.79 E-value=4.3e-18 Score=139.81 Aligned_cols=117 Identities=28% Similarity=0.491 Sum_probs=105.6
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhcC-CEEE-EECCHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCCCCCHHHHHHHHh
Q 026776 30 VHVLAVDDSFVDRKVIERLLTISS-CKVT-AVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKKIK 107 (233)
Q Consensus 30 ~~ILIVddd~~~~~~l~~~L~~~g-~~v~-~a~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp~~~g~~ll~~Lr 107 (233)
++|+|+||++.++..++.+|...+ ++|. .+.++.++++.+ ....||+||+|+.||+++|+++++.|+
T Consensus 1 ~~vlivDDh~l~r~gl~~~L~~~~~~~vv~~a~~~~~~l~~~-----------~~~~pdvvl~Dl~mP~~~G~e~~~~l~ 69 (211)
T COG2197 1 IKVLIVDDHPLVREGLRQLLELEPDLEVVGEASNGEEALDLA-----------RELKPDVVLLDLSMPGMDGLEALKQLR 69 (211)
T ss_pred CeEEEECCcHHHHHHHHHHHhhCCCCEEEEEeCCHHHHHHHh-----------hhcCCCEEEEcCCCCCCChHHHHHHHH
Confidence 479999999999999999998775 7654 577899999987 567899999999999999999999999
Q ss_pred ccCCCCCCcEEEEeCCCcHHHHHHHHHcCCceEEeCCCCHHHHHHHHHHHhh
Q 026776 108 DSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVKLSDVKRIKDYLTR 159 (233)
Q Consensus 108 ~~~~~~~~piIvlt~~~~~~~~~~al~~Ga~dyL~KP~~~~eL~~~~~~l~~ 159 (233)
+..+ .++++++|.+.+..++.+++++|+++|+.|..+.++|.++++.+..
T Consensus 70 ~~~p--~~~vvvlt~~~~~~~v~~al~~Ga~Gyl~K~~~~~~l~~ai~~v~~ 119 (211)
T COG2197 70 ARGP--DIKVVVLTAHDDPAYVIRALRAGADGYLLKDASPEELVEAIRAVAA 119 (211)
T ss_pred HHCC--CCcEEEEeccCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHC
Confidence 7665 8899999999999999999999999999999999999888777654
No 10
>KOG0519 consensus Sensory transduction histidine kinase [Signal transduction mechanisms]
Probab=99.77 E-value=4.9e-18 Score=162.81 Aligned_cols=124 Identities=30% Similarity=0.477 Sum_probs=111.4
Q ss_pred CCCCCCCcEEEEEeCCHHHHHHHHHHHhhcCCEEEEECCHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCCCCCHHHH
Q 026776 23 SPSDTEEVHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYEL 102 (233)
Q Consensus 23 ~~~~~~~~~ILIVddd~~~~~~l~~~L~~~g~~v~~a~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp~~~g~~l 102 (233)
.....++.+||+|||+..++.+...+|+.+|+++.++.+|.+|++.+. ..+.||+||+|++||.|||+++
T Consensus 660 ~~~~l~g~~iLlvddn~vn~~Va~~~l~~~g~~~~~~~sg~e~l~~~~----------~~~~y~~ifmD~qMP~mDG~e~ 729 (786)
T KOG0519|consen 660 DSKLLTGPKILLVDDNPVNRKVATGMLKKLGAEVTEVNSGQEALDKLK----------PPHSYDVIFMDLQMPEMDGYEA 729 (786)
T ss_pred ccccccCCceEEEecccchHHHHHHHHHHhCCeeEeecCcHHHHHhcC----------CCCcccEEEEEcCCcccchHHH
Confidence 333466789999999999999999999999999999999999999983 2578999999999999999999
Q ss_pred HHHHhccCCCCCCcEEEEeCCCcHHHHHHHHHcCCceEEeCCCCHHHHHHHHHHH
Q 026776 103 LKKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVKLSDVKRIKDYL 157 (233)
Q Consensus 103 l~~Lr~~~~~~~~piIvlt~~~~~~~~~~al~~Ga~dyL~KP~~~~eL~~~~~~l 157 (233)
.++||+... ..+|||++|++.+.....+|++.|+|+||.||++.+.|...+..+
T Consensus 730 ~~~irk~~~-~~~pIvAlTa~~~~~~~~~c~~~Gmd~yl~KP~~~~~l~~~l~~~ 783 (786)
T KOG0519|consen 730 TREIRKKER-WHLPIVALTADADPSTEEECLEVGMDGYLSKPFTLEKLVKILREF 783 (786)
T ss_pred HHHHHHhhc-CCCCEEEEecCCcHHHHHHHHHhCCceEEcccccHHHHHHHHHHH
Confidence 999998664 689999999999999999999999999999999988887665543
No 11
>PRK10046 dpiA two-component response regulator DpiA; Provisional
Probab=99.77 E-value=2.8e-17 Score=135.96 Aligned_cols=120 Identities=15% Similarity=0.258 Sum_probs=106.2
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHhhc-CC-EEEEECCHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCCCCCHHHHHHH
Q 026776 28 EEVHVLAVDDSFVDRKVIERLLTIS-SC-KVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKK 105 (233)
Q Consensus 28 ~~~~ILIVddd~~~~~~l~~~L~~~-g~-~v~~a~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp~~~g~~ll~~ 105 (233)
++++||||||++..+..+..+|... ++ .+..+.++.++++.+ ....||+||+|+.||+++|+++++.
T Consensus 3 ~~~~ilivdd~~~~~~~l~~~L~~~~~~~~v~~a~~~~~al~~~-----------~~~~pdlvllD~~mp~~~gle~~~~ 71 (225)
T PRK10046 3 APLTLLIVEDETPLAEMHAEYIRHIPGFSQILLAGNLAQARMMI-----------ERFKPGLILLDNYLPDGRGINLLHE 71 (225)
T ss_pred CcceEEEECCCHHHHHHHHHHHHhCCCcEEEEEECCHHHHHHHH-----------HhcCCCEEEEeCCCCCCcHHHHHHH
Confidence 4689999999999999999999864 67 467899999999988 4567999999999999999999999
Q ss_pred HhccCCCCCCcEEEEeCCCcHHHHHHHHHcCCceEEeCCCCHHHHHHHHHHHhhh
Q 026776 106 IKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVKLSDVKRIKDYLTRD 160 (233)
Q Consensus 106 Lr~~~~~~~~piIvlt~~~~~~~~~~al~~Ga~dyL~KP~~~~eL~~~~~~l~~~ 160 (233)
|++... ..+||++|+..+.....++++.|+++|+.||++.++|...++.+...
T Consensus 72 l~~~~~--~~~iivls~~~~~~~~~~al~~Ga~~yl~Kp~~~~~L~~~i~~~~~~ 124 (225)
T PRK10046 72 LVQAHY--PGDVVFTTAASDMETVSEAVRCGVFDYLIKPIAYERLGQTLTRFRQR 124 (225)
T ss_pred HHhcCC--CCCEEEEEcCCCHHHHHHHHHcCccEEEECCcCHHHHHHHHHHHHHH
Confidence 998654 67899999999999999999999999999999999998777665443
No 12
>COG0784 CheY FOG: CheY-like receiver [Signal transduction mechanisms]
Probab=99.77 E-value=4.7e-17 Score=122.25 Aligned_cols=115 Identities=35% Similarity=0.598 Sum_probs=100.2
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHhhcCCEEEEECCHH-HHHHHhhhhhhhhccCCCCC-cccEEEEcCCCCCCCHHHHHHH
Q 026776 28 EEVHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGR-RALQFLGLDEEQSINGFDGL-KVDLIITDYCMPGMTGYELLKK 105 (233)
Q Consensus 28 ~~~~ILIVddd~~~~~~l~~~L~~~g~~v~~a~~~~-~al~~l~~~~~~~~~~~~~~-~~DlvllD~~mp~~~g~~ll~~ 105 (233)
...+||+|||++..+..+...|...|+.+..+.++. ++++.+ ... .||+|++|+.||+++|++++++
T Consensus 4 ~~~~vLivdD~~~~~~~~~~~l~~~g~~v~~a~~g~~~al~~~-----------~~~~~~dlii~D~~mp~~~G~~~~~~ 72 (130)
T COG0784 4 SGLRVLVVDDEPVNRRLLKRLLEDLGYEVVEAADGEEEALELL-----------RELPQPDLILLDINMPGMDGIELLRR 72 (130)
T ss_pred CCcEEEEEcCCHHHHHHHHHHHHHcCCeEEEeCChHHHHHHHH-----------HhCCCCCEEEEeCCCCCCCHHHHHHH
Confidence 568999999999999999999999999999999996 999998 445 4999999999999999999999
Q ss_pred HhccCCCCCCcEEEEeCCCcHHHHHHHHHcCCceEEeCCCCHHH-HHHHHH
Q 026776 106 IKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVKLSD-VKRIKD 155 (233)
Q Consensus 106 Lr~~~~~~~~piIvlt~~~~~~~~~~al~~Ga~dyL~KP~~~~e-L~~~~~ 155 (233)
+++.. ..+|+|++|++........+++.|+++|+.||+...+ |...+.
T Consensus 73 l~~~~--~~~pvv~~t~~~~~~~~~~~~~~g~~~~l~kP~~~~~~l~~~i~ 121 (130)
T COG0784 73 LRARG--PNIPVILLTAYADEADRERALAAGADDYLTKPIFLEEELLAALR 121 (130)
T ss_pred HHhCC--CCCCEEEEEcCcCHHHHHHHHHcCCCeEEcCCCCcHHHHHHHHH
Confidence 99863 3678888999888776777899999999999977666 554444
No 13
>COG4567 Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain [Signal transduction mechanisms / Transcription]
Probab=99.75 E-value=3.5e-17 Score=124.10 Aligned_cols=111 Identities=18% Similarity=0.276 Sum_probs=105.3
Q ss_pred EEEEEeCCHHHHHHHHHHHhhcCCEEEEECCHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCCCCCHHHHHHHHhccC
Q 026776 31 HVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKKIKDSS 110 (233)
Q Consensus 31 ~ILIVddd~~~~~~l~~~L~~~g~~v~~a~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp~~~g~~ll~~Lr~~~ 110 (233)
..||||||..+...|.+.++.-||.|..+.+.++++..+ +...|...++|+.|.+.+|+++++.||+..
T Consensus 11 ~lllvdDD~~f~~~LaRa~e~RGf~v~~a~~~~eal~~a-----------rt~~PayAvvDlkL~~gsGL~~i~~lr~~~ 79 (182)
T COG4567 11 SLLLVDDDTPFLRTLARAMERRGFAVVTAESVEEALAAA-----------RTAPPAYAVVDLKLGDGSGLAVIEALRERR 79 (182)
T ss_pred eeEEecCChHHHHHHHHHHhccCceeEeeccHHHHHHHH-----------hcCCCceEEEEeeecCCCchHHHHHHHhcC
Confidence 799999999999999999999999999999999999998 677899999999999999999999999987
Q ss_pred CCCCCcEEEEeCCCcHHHHHHHHHcCCceEEeCCCCHHHHHHHH
Q 026776 111 ALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVKLSDVKRIK 154 (233)
Q Consensus 111 ~~~~~piIvlt~~~~~~~~~~al~~Ga~dyL~KP~~~~eL~~~~ 154 (233)
. +..||++|++.+...+++|++.||++||.||.+.+++.+++
T Consensus 80 ~--d~rivvLTGy~sIATAV~AvKlGA~~YLaKPAdaDdi~aAl 121 (182)
T COG4567 80 A--DMRIVVLTGYASIATAVEAVKLGACDYLAKPADADDILAAL 121 (182)
T ss_pred C--cceEEEEecchHHHHHHHHHHhhhhhhcCCCCChHHHHHHH
Confidence 7 99999999999999999999999999999999999986654
No 14
>COG3706 PleD Response regulator containing a CheY-like receiver domain and a GGDEF domain [Signal transduction mechanisms]
Probab=99.74 E-value=6.7e-17 Score=143.69 Aligned_cols=113 Identities=30% Similarity=0.547 Sum_probs=107.0
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHhhcCCEEEEECCHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCCCCCHHHHHHHHh
Q 026776 28 EEVHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKKIK 107 (233)
Q Consensus 28 ~~~~ILIVddd~~~~~~l~~~L~~~g~~v~~a~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp~~~g~~ll~~Lr 107 (233)
...+||+|||+...+..++.+|...||++..+.++.+|+..+ .+.+||+||+|+.||++||+++++.+|
T Consensus 131 ~~~kILvvdD~~~~~~~l~~~L~~~g~~v~~a~~~~~Al~~~-----------~e~~~dlil~d~~mp~~dg~el~~~lr 199 (435)
T COG3706 131 APKKILVVDDDATQRERLRRILQVEGFRVVEATDGEEALLQL-----------AELPPDLVLLDANMPDMDGLELCTRLR 199 (435)
T ss_pred cCceEEEEcCcHHHHHHHHHHHHhccceeeeecCHHHHHHHH-----------hcCCCcEEEEecCCCccCHHHHHHHHh
Confidence 578999999999999999999999999999999999999998 456899999999999999999999999
Q ss_pred ccCCCCCCcEEEEeCCCcHHHHHHHHHcCCceEEeCCCCHHHHH
Q 026776 108 DSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVKLSDVK 151 (233)
Q Consensus 108 ~~~~~~~~piIvlt~~~~~~~~~~al~~Ga~dyL~KP~~~~eL~ 151 (233)
+......+|+|++++..+.....++++.|++||+.||+...++.
T Consensus 200 ~~~~t~~ipii~~~~~~d~~~~~~Af~~G~~Dyi~kPi~~~~l~ 243 (435)
T COG3706 200 QLERTRDIPIILLSSKDDDELVVRAFELGVNDYITKPIEEGELR 243 (435)
T ss_pred cccccccccEEEEecccchHHHHHHHHcCCcceEecCCCHHHHH
Confidence 98888899999999999999999999999999999999977774
No 15
>PRK10816 DNA-binding transcriptional regulator PhoP; Provisional
Probab=99.73 E-value=2.1e-16 Score=129.36 Aligned_cols=117 Identities=22% Similarity=0.423 Sum_probs=105.9
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhcCCEEEEECCHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCCCCCHHHHHHHHhcc
Q 026776 30 VHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKKIKDS 109 (233)
Q Consensus 30 ~~ILIVddd~~~~~~l~~~L~~~g~~v~~a~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp~~~g~~ll~~Lr~~ 109 (233)
|+||+|||+...+..+...|+..|+.+..+.++.+++..+ ....||+||+|+.||+++|+++++.++..
T Consensus 1 m~iLlv~d~~~~~~~l~~~L~~~g~~v~~~~~~~~~l~~~-----------~~~~~dlvild~~l~~~~g~~l~~~lr~~ 69 (223)
T PRK10816 1 MRVLVVEDNALLRHHLKVQLQDAGHQVDAAEDAKEADYYL-----------NEHLPDIAIVDLGLPDEDGLSLIRRWRSN 69 (223)
T ss_pred CeEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHH-----------hhCCCCEEEEECCCCCCCHHHHHHHHHhc
Confidence 4799999999999999999999999999999999999887 45679999999999999999999999986
Q ss_pred CCCCCCcEEEEeCCCcHHHHHHHHHcCCceEEeCCCCHHHHHHHHHHHhh
Q 026776 110 SALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVKLSDVKRIKDYLTR 159 (233)
Q Consensus 110 ~~~~~~piIvlt~~~~~~~~~~al~~Ga~dyL~KP~~~~eL~~~~~~l~~ 159 (233)
.+ .+|+|++++..+......+++.|+++|+.||++..+|...+..+.+
T Consensus 70 ~~--~~pii~ls~~~~~~~~~~~l~~Ga~d~l~kp~~~~eL~~~i~~~~~ 117 (223)
T PRK10816 70 DV--SLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMR 117 (223)
T ss_pred CC--CCCEEEEEcCCCHHHHHHHHHcCCCeeEeCCCCHHHHHHHHHHHHh
Confidence 54 8899999999999999999999999999999999998766665544
No 16
>PRK09836 DNA-binding transcriptional activator CusR; Provisional
Probab=99.73 E-value=2.9e-16 Score=128.89 Aligned_cols=117 Identities=22% Similarity=0.417 Sum_probs=105.5
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhcCCEEEEECCHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCCCCCHHHHHHHHhcc
Q 026776 30 VHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKKIKDS 109 (233)
Q Consensus 30 ~~ILIVddd~~~~~~l~~~L~~~g~~v~~a~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp~~~g~~ll~~Lr~~ 109 (233)
|+||++||++..+..+...|...|+.+..+.++.++++.+ ....||+||+|+.+|+++|+++++.+++.
T Consensus 1 m~iliv~d~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~-----------~~~~~dlvild~~~~~~~g~~~~~~lr~~ 69 (227)
T PRK09836 1 MKLLIVEDEKKTGEYLTKGLTEAGFVVDLADNGLNGYHLA-----------MTGDYDLIILDIMLPDVNGWDIVRMLRSA 69 (227)
T ss_pred CeEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHH-----------hhCCCCEEEEECCCCCCCHHHHHHHHHhc
Confidence 4799999999999999999999999999999999999877 45579999999999999999999999986
Q ss_pred CCCCCCcEEEEeCCCcHHHHHHHHHcCCceEEeCCCCHHHHHHHHHHHhh
Q 026776 110 SALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVKLSDVKRIKDYLTR 159 (233)
Q Consensus 110 ~~~~~~piIvlt~~~~~~~~~~al~~Ga~dyL~KP~~~~eL~~~~~~l~~ 159 (233)
.+ .+|+|+++...+......+++.|+++|+.||++.++|...+..+.+
T Consensus 70 ~~--~~pii~ls~~~~~~~~~~~~~~Ga~~~l~kp~~~~~l~~~i~~~~~ 117 (227)
T PRK09836 70 NK--GMPILLLTALGTIEHRVKGLELGADDYLVKPFAFAELLARVRTLLR 117 (227)
T ss_pred CC--CCCEEEEEcCCCHHHHHHHHhCCCCEEEeCCCCHHHHHHHHHHHHh
Confidence 54 7899999999999999999999999999999999999766665544
No 17
>PRK11173 two-component response regulator; Provisional
Probab=99.72 E-value=3.5e-16 Score=129.53 Aligned_cols=118 Identities=23% Similarity=0.416 Sum_probs=105.2
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHhhcCCEEEEECCHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCCCCCHHHHHHHHh
Q 026776 28 EEVHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKKIK 107 (233)
Q Consensus 28 ~~~~ILIVddd~~~~~~l~~~L~~~g~~v~~a~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp~~~g~~ll~~Lr 107 (233)
+..+||+|||++..+..+...|+..|+.+..+.++.+++..+ ....||+||+|+.||+++|+++++.++
T Consensus 2 ~~~~iLiv~dd~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~-----------~~~~~dlvild~~l~~~~g~~~~~~lr 70 (237)
T PRK11173 2 QTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQIL-----------SENDINLVIMDINLPGKNGLLLARELR 70 (237)
T ss_pred CCCeEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHH-----------hhCCCCEEEEcCCCCCCCHHHHHHHHh
Confidence 346899999999999999999999999999999999999988 455799999999999999999999999
Q ss_pred ccCCCCCCcEEEEeCCCcHHHHHHHHHcCCceEEeCCCCHHHHHHHHHHHhh
Q 026776 108 DSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVKLSDVKRIKDYLTR 159 (233)
Q Consensus 108 ~~~~~~~~piIvlt~~~~~~~~~~al~~Ga~dyL~KP~~~~eL~~~~~~l~~ 159 (233)
+. . .+|+|++++..+......+++.|+++|+.||++..+|...+..+.+
T Consensus 71 ~~-~--~~pii~lt~~~~~~~~~~~~~~ga~d~l~kP~~~~eL~~~i~~~l~ 119 (237)
T PRK11173 71 EQ-A--NVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLS 119 (237)
T ss_pred cC-C--CCCEEEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHh
Confidence 74 2 7899999999888888899999999999999999999655555444
No 18
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=99.72 E-value=2.5e-17 Score=137.25 Aligned_cols=119 Identities=27% Similarity=0.441 Sum_probs=107.6
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhcCCEEEEECCHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCCCCCHHHHHHHHhcc
Q 026776 30 VHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKKIKDS 109 (233)
Q Consensus 30 ~~ILIVddd~~~~~~l~~~L~~~g~~v~~a~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp~~~g~~ll~~Lr~~ 109 (233)
++|+|||||......+..+|.+.|+.+..++...++++.+ ..+.||+||+|+.||+++|+++++++|..
T Consensus 1 ~~~iiVDdd~a~~~~l~~iLs~~~~~~~~~~~~~eal~~L-----------e~~kpDLifldI~mp~~ngiefaeQvr~i 69 (361)
T COG3947 1 PRIIIVDDDAAIVKLLSVILSRAGHEVRSCSHPVEALDLL-----------EVFKPDLIFLDIVMPYMNGIEFAEQVRDI 69 (361)
T ss_pred CcEEEEcchHHHHHHHHHHHHhccchhhccCCHHHHHHHH-----------HhcCCCEEEEEeecCCccHHHHHHHHHHh
Confidence 5799999999999999999999999999999999999999 67789999999999999999999999998
Q ss_pred CCCCCCcEEEEeCCCcHHHHHHHHHcCCceEEeCCCCHHHHHHHHHHHhhhhhc
Q 026776 110 SALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVKLSDVKRIKDYLTRDVNL 163 (233)
Q Consensus 110 ~~~~~~piIvlt~~~~~~~~~~al~~Ga~dyL~KP~~~~eL~~~~~~l~~~~~~ 163 (233)
.+ .++||++|++. ++....+...++|||.||++.+.|.+++.++.+....
T Consensus 70 ~~--~v~iifIssh~--eya~dsf~~n~~dYl~KPvt~ekLnraIdr~~k~ve~ 119 (361)
T COG3947 70 ES--AVPIIFISSHA--EYADDSFGMNLDDYLPKPVTPEKLNRAIDRRLKRVEL 119 (361)
T ss_pred hc--cCcEEEEecch--hhhhhhcccchHhhccCCCCHHHHHHHHHHHhccccc
Confidence 76 99999999986 5566778888899999999999999998887765443
No 19
>PRK10841 hybrid sensory kinase in two-component regulatory system with RcsB and YojN; Provisional
Probab=99.72 E-value=2.6e-16 Score=153.94 Aligned_cols=120 Identities=26% Similarity=0.522 Sum_probs=110.1
Q ss_pred CCCcEEEEEeCCHHHHHHHHHHHhhcCCEEEEECCHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCCCCCHHHHHHHH
Q 026776 27 TEEVHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKKI 106 (233)
Q Consensus 27 ~~~~~ILIVddd~~~~~~l~~~L~~~g~~v~~a~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp~~~g~~ll~~L 106 (233)
...++||||||++.++..+..+|+..||.+..+.++.++++.+ ....||+||+|+.||+++|+++++.|
T Consensus 799 ~~~~~ILvVdD~~~~~~~l~~~L~~~G~~v~~a~~g~eal~~l-----------~~~~~DlVl~D~~mP~mdG~el~~~i 867 (924)
T PRK10841 799 NDDMMILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVL-----------SKNHIDIVLTDVNMPNMDGYRLTQRL 867 (924)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHH-----------HhCCCCEEEEcCCCCCCCHHHHHHHH
Confidence 3568999999999999999999999999999999999999998 45679999999999999999999999
Q ss_pred hccCCCCCCcEEEEeCCCcHHHHHHHHHcCCceEEeCCCCHHHHHHHHHHHhh
Q 026776 107 KDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVKLSDVKRIKDYLTR 159 (233)
Q Consensus 107 r~~~~~~~~piIvlt~~~~~~~~~~al~~Ga~dyL~KP~~~~eL~~~~~~l~~ 159 (233)
|+... .+|||++|+....+...+++++|+++||.||++.++|...+..+.+
T Consensus 868 r~~~~--~~pII~lTa~~~~~~~~~~~~aG~d~~L~KPv~~~~L~~~L~~~~~ 918 (924)
T PRK10841 868 RQLGL--TLPVIGVTANALAEEKQRCLEAGMDSCLSKPVTLDVLKQTLTVYAE 918 (924)
T ss_pred HhcCC--CCCEEEEECCCCHHHHHHHHHCCCCEEEeCCCCHHHHHHHHHHHHH
Confidence 98765 8999999999998899999999999999999999999887766544
No 20
>PRK10529 DNA-binding transcriptional activator KdpE; Provisional
Probab=99.72 E-value=4.6e-16 Score=127.41 Aligned_cols=116 Identities=25% Similarity=0.388 Sum_probs=104.1
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhcCCEEEEECCHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCCCCCHHHHHHHHhcc
Q 026776 30 VHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKKIKDS 109 (233)
Q Consensus 30 ~~ILIVddd~~~~~~l~~~L~~~g~~v~~a~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp~~~g~~ll~~Lr~~ 109 (233)
.+||+|||++..+..+...|...|+.+..+.++.+++..+ ....||+||+|+.||+++|+++++.|++.
T Consensus 2 ~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~-----------~~~~~dlvild~~l~~~~g~~~~~~lr~~ 70 (225)
T PRK10529 2 TNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEA-----------ATRKPDLIILDLGLPDGDGIEFIRDLRQW 70 (225)
T ss_pred CEEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHH-----------hcCCCCEEEEeCCCCCCCHHHHHHHHHcC
Confidence 5799999999999999999999999999999999998877 45579999999999999999999999974
Q ss_pred CCCCCCcEEEEeCCCcHHHHHHHHHcCCceEEeCCCCHHHHHHHHHHHhh
Q 026776 110 SALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVKLSDVKRIKDYLTR 159 (233)
Q Consensus 110 ~~~~~~piIvlt~~~~~~~~~~al~~Ga~dyL~KP~~~~eL~~~~~~l~~ 159 (233)
..+|+|++++..+......+++.|+++|+.||++.++|...+..+.+
T Consensus 71 ---~~~pvi~lt~~~~~~~~~~~~~~ga~~~l~kP~~~~~l~~~i~~~~~ 117 (225)
T PRK10529 71 ---SAIPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALR 117 (225)
T ss_pred ---CCCCEEEEECCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHh
Confidence 27899999999988889999999999999999999999776665544
No 21
>PRK10643 DNA-binding transcriptional regulator BasR; Provisional
Probab=99.72 E-value=5.7e-16 Score=126.03 Aligned_cols=117 Identities=23% Similarity=0.395 Sum_probs=105.3
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhcCCEEEEECCHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCCCCCHHHHHHHHhcc
Q 026776 30 VHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKKIKDS 109 (233)
Q Consensus 30 ~~ILIVddd~~~~~~l~~~L~~~g~~v~~a~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp~~~g~~ll~~Lr~~ 109 (233)
++||+|||+...+..+...|...|+.+..+.++.+++..+ ....||+|++|+.||+++|+++++.++..
T Consensus 1 ~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~-----------~~~~~d~illd~~~~~~~g~~~~~~l~~~ 69 (222)
T PRK10643 1 MKILIVEDDTLLLQGLILALQTEGYACDCASTAREAEALL-----------ESGHYSLVVLDLGLPDEDGLHLLRRWRQK 69 (222)
T ss_pred CEEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHH-----------HhCCCCEEEEECCCCCCCHHHHHHHHHhc
Confidence 4799999999999999999999999999999999999887 44579999999999999999999999976
Q ss_pred CCCCCCcEEEEeCCCcHHHHHHHHHcCCceEEeCCCCHHHHHHHHHHHhh
Q 026776 110 SALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVKLSDVKRIKDYLTR 159 (233)
Q Consensus 110 ~~~~~~piIvlt~~~~~~~~~~al~~Ga~dyL~KP~~~~eL~~~~~~l~~ 159 (233)
.. .+|+|+++...+......+++.|+++|+.||++.++|...+..+.+
T Consensus 70 ~~--~~pii~ls~~~~~~~~~~~~~~ga~~~l~kp~~~~~l~~~i~~~~~ 117 (222)
T PRK10643 70 KY--TLPVLILTARDTLEDRVAGLDVGADDYLVKPFALEELHARIRALIR 117 (222)
T ss_pred CC--CCcEEEEECCCCHHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHh
Confidence 54 7899999999988999999999999999999999999776665544
No 22
>PRK10161 transcriptional regulator PhoB; Provisional
Probab=99.71 E-value=6.4e-16 Score=126.99 Aligned_cols=120 Identities=27% Similarity=0.405 Sum_probs=107.0
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhcCCEEEEECCHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCCCCCHHHHHHHHhcc
Q 026776 30 VHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKKIKDS 109 (233)
Q Consensus 30 ~~ILIVddd~~~~~~l~~~L~~~g~~v~~a~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp~~~g~~ll~~Lr~~ 109 (233)
.+||||||++..+..+...|...|+++..+.++.+++..+ ....||+||+|+.|++++|+++++.++..
T Consensus 3 ~~Ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~-----------~~~~~dlvild~~l~~~~g~~~~~~l~~~ 71 (229)
T PRK10161 3 RRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQL-----------NEPWPDLILLDWMLPGGSGIQFIKHLKRE 71 (229)
T ss_pred CeEEEEcCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHH-----------hccCCCEEEEeCCCCCCCHHHHHHHHHhc
Confidence 6799999999999999999998999999999999999987 45679999999999999999999999976
Q ss_pred CCCCCCcEEEEeCCCcHHHHHHHHHcCCceEEeCCCCHHHHHHHHHHHhhh
Q 026776 110 SALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVKLSDVKRIKDYLTRD 160 (233)
Q Consensus 110 ~~~~~~piIvlt~~~~~~~~~~al~~Ga~dyL~KP~~~~eL~~~~~~l~~~ 160 (233)
...+.+|+|++++..+.....+++++|+++|+.||++.++|...+..+.+.
T Consensus 72 ~~~~~~pvi~ls~~~~~~~~~~~~~~Ga~~~l~kp~~~~~L~~~i~~~~~~ 122 (229)
T PRK10161 72 SMTRDIPVVMLTARGEEEDRVRGLETGADDYITKPFSPKELVARIKAVMRR 122 (229)
T ss_pred cccCCCCEEEEECCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHhc
Confidence 433478999999999888999999999999999999999997776665543
No 23
>PRK11107 hybrid sensory histidine kinase BarA; Provisional
Probab=99.71 E-value=3.1e-16 Score=153.10 Aligned_cols=121 Identities=26% Similarity=0.410 Sum_probs=110.6
Q ss_pred CCCcEEEEEeCCHHHHHHHHHHHhhcCCEEEEECCHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCCCCCHHHHHHHH
Q 026776 27 TEEVHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKKI 106 (233)
Q Consensus 27 ~~~~~ILIVddd~~~~~~l~~~L~~~g~~v~~a~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp~~~g~~ll~~L 106 (233)
...++||||||++..+..+..+|...|+.+..+.++.++++.+ ....||+||+|+.||+++|+++++.|
T Consensus 665 ~~~~~vLivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~al~~~-----------~~~~~dlil~D~~mp~~~g~~~~~~l 733 (919)
T PRK11107 665 RLPLTVMAVDDNPANLKLIGALLEEQVEHVVLCDSGHQAVEQA-----------KQRPFDLILMDIQMPGMDGIRACELI 733 (919)
T ss_pred cCCCeEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHH-----------HhCCCCEEEEeCCCCCCcHHHHHHHH
Confidence 4568999999999999999999999999999999999999988 45679999999999999999999999
Q ss_pred hccCCCCCCcEEEEeCCCcHHHHHHHHHcCCceEEeCCCCHHHHHHHHHHHh
Q 026776 107 KDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVKLSDVKRIKDYLT 158 (233)
Q Consensus 107 r~~~~~~~~piIvlt~~~~~~~~~~al~~Ga~dyL~KP~~~~eL~~~~~~l~ 158 (233)
|+......+|||++|++.......++++.|+++|+.||++..+|...+..+.
T Consensus 734 r~~~~~~~~pii~lt~~~~~~~~~~~~~~G~~~~l~KP~~~~~L~~~l~~~~ 785 (919)
T PRK11107 734 RQLPHNQNTPIIAVTAHAMAGERERLLSAGMDDYLAKPIDEAMLKQVLLRYK 785 (919)
T ss_pred HhcccCCCCCEEEEeCCCCHHHHHHHHHcCCCeEeeCCCCHHHHHHHHHHHc
Confidence 9865555899999999999999999999999999999999999987776654
No 24
>PRK10336 DNA-binding transcriptional regulator QseB; Provisional
Probab=99.71 E-value=7.5e-16 Score=125.21 Aligned_cols=117 Identities=26% Similarity=0.433 Sum_probs=105.1
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhcCCEEEEECCHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCCCCCHHHHHHHHhcc
Q 026776 30 VHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKKIKDS 109 (233)
Q Consensus 30 ~~ILIVddd~~~~~~l~~~L~~~g~~v~~a~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp~~~g~~ll~~Lr~~ 109 (233)
++||||||++..+..+...|...|+.+..+.++.+++..+ ....||+||+|+.|++++|+++++.++..
T Consensus 1 ~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~-----------~~~~~dlvild~~l~~~~g~~~~~~i~~~ 69 (219)
T PRK10336 1 MRILLIEDDMLIGDGIKTGLSKMGFSVDWFTQGRQGKEAL-----------YSAPYDAVILDLTLPGMDGRDILREWREK 69 (219)
T ss_pred CeEEEEcCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHH-----------hhCCCCEEEEECCCCCCCHHHHHHHHHhc
Confidence 4799999999999999999999999999999999999877 34569999999999999999999999986
Q ss_pred CCCCCCcEEEEeCCCcHHHHHHHHHcCCceEEeCCCCHHHHHHHHHHHhh
Q 026776 110 SALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVKLSDVKRIKDYLTR 159 (233)
Q Consensus 110 ~~~~~~piIvlt~~~~~~~~~~al~~Ga~dyL~KP~~~~eL~~~~~~l~~ 159 (233)
.+ .+|+|+++...+......+++.|+++|+.||++.++|...+..+.+
T Consensus 70 ~~--~~~ii~lt~~~~~~~~~~~~~~ga~~~i~kp~~~~~l~~~i~~~~~ 117 (219)
T PRK10336 70 GQ--REPVLILTARDALAERVEGLRLGADDYLCKPFALIEVAARLEALMR 117 (219)
T ss_pred CC--CCcEEEEECCCCHHHHHHHHhCCCCeEEECCCCHHHHHHHHHHHHh
Confidence 54 7899999999988888999999999999999999999776666544
No 25
>TIGR02154 PhoB phosphate regulon transcriptional regulatory protein PhoB. PhoB is a DNA-binding response regulator protein acting with PhoR in a 2-component system responding to phosphate ion. PhoB acts as a positive regulator of gene expression for phosphate-related genes such as phoA, phoS, phoE and ugpAB as well as itself. It is often found proximal to genes for the high-affinity phosphate ABC transporter (pstSCAB; GenProp0190) and presumably regulates these as well.
Probab=99.70 E-value=8.2e-16 Score=125.29 Aligned_cols=120 Identities=27% Similarity=0.457 Sum_probs=106.6
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhcCCEEEEECCHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCCCCCHHHHHHHHhcc
Q 026776 30 VHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKKIKDS 109 (233)
Q Consensus 30 ~~ILIVddd~~~~~~l~~~L~~~g~~v~~a~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp~~~g~~ll~~Lr~~ 109 (233)
.+|||+||++..+..+...|...|+.+..+.++.+++..+ ....||+||+|+.||+++|+++++.++..
T Consensus 3 ~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~-----------~~~~~d~vi~d~~~~~~~g~~~~~~l~~~ 71 (226)
T TIGR02154 3 RRILVVEDEPAIRELIAYNLEKAGYDVVEAGDGDEALTLI-----------NERGPDLILLDWMLPGTSGIELCRRLRRR 71 (226)
T ss_pred CeEEEEeCCHHHHHHHHHHHHHCCCEEEEEcCHHHHHHHH-----------HhcCCCEEEEECCCCCCcHHHHHHHHHcc
Confidence 6799999999999999999998999999999999999887 45579999999999999999999999976
Q ss_pred CCCCCCcEEEEeCCCcHHHHHHHHHcCCceEEeCCCCHHHHHHHHHHHhhh
Q 026776 110 SALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVKLSDVKRIKDYLTRD 160 (233)
Q Consensus 110 ~~~~~~piIvlt~~~~~~~~~~al~~Ga~dyL~KP~~~~eL~~~~~~l~~~ 160 (233)
.....+|+|++++..+......+++.|+++|+.||++.++|...+..+.+.
T Consensus 72 ~~~~~~~ii~ls~~~~~~~~~~~~~~Ga~~~l~kp~~~~~l~~~i~~~~~~ 122 (226)
T TIGR02154 72 PETRAIPIIMLTARGEEEDRVRGLETGADDYITKPFSPRELLARIKAVLRR 122 (226)
T ss_pred ccCCCCCEEEEecCCCHHHHHHHHhcCcceEEeCCCCHHHHHHHHHHHhcc
Confidence 434478999999999888889999999999999999999997766665443
No 26
>PRK09468 ompR osmolarity response regulator; Provisional
Probab=99.70 E-value=9.6e-16 Score=126.86 Aligned_cols=119 Identities=22% Similarity=0.389 Sum_probs=107.0
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHhhcCCEEEEECCHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCCCCCHHHHHHHHh
Q 026776 28 EEVHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKKIK 107 (233)
Q Consensus 28 ~~~~ILIVddd~~~~~~l~~~L~~~g~~v~~a~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp~~~g~~ll~~Lr 107 (233)
...+|||+||++..+..+...|...|+++..+.++.+++..+ ....||+||+|+.||+++|+++++.|+
T Consensus 4 ~~~~iLiv~d~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~-----------~~~~~dlvild~~l~~~~g~~~~~~lr 72 (239)
T PRK09468 4 ENYKILVVDDDMRLRALLERYLTEQGFQVRSAANAEQMDRLL-----------TRESFHLMVLDLMLPGEDGLSICRRLR 72 (239)
T ss_pred CCCeEEEEcCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHH-----------hcCCCCEEEEeCCCCCCCHHHHHHHHH
Confidence 347899999999999999999999999999999999999887 456799999999999999999999999
Q ss_pred ccCCCCCCcEEEEeCCCcHHHHHHHHHcCCceEEeCCCCHHHHHHHHHHHhh
Q 026776 108 DSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVKLSDVKRIKDYLTR 159 (233)
Q Consensus 108 ~~~~~~~~piIvlt~~~~~~~~~~al~~Ga~dyL~KP~~~~eL~~~~~~l~~ 159 (233)
.... .+|+|++++..+......+++.|+++|+.||++.++|...+..+.+
T Consensus 73 ~~~~--~~pii~ls~~~~~~~~~~~l~~Ga~~~l~kP~~~~~L~~~i~~~~~ 122 (239)
T PRK09468 73 SQNN--PTPIIMLTAKGEEVDRIVGLEIGADDYLPKPFNPRELLARIRAVLR 122 (239)
T ss_pred hcCC--CCCEEEEECCCcHHHHHHHHhcCCCeEEECCCCHHHHHHHHHHHhc
Confidence 7654 7899999999988888999999999999999999999776665544
No 27
>PRK10840 transcriptional regulator RcsB; Provisional
Probab=99.70 E-value=6.8e-16 Score=126.61 Aligned_cols=119 Identities=22% Similarity=0.311 Sum_probs=104.5
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHhhcCC-E-EEEECCHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCCC---CCHHHH
Q 026776 28 EEVHVLAVDDSFVDRKVIERLLTISSC-K-VTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPG---MTGYEL 102 (233)
Q Consensus 28 ~~~~ILIVddd~~~~~~l~~~L~~~g~-~-v~~a~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp~---~~g~~l 102 (233)
++++||||||++..+..++..|...++ . +..+.++.++++.+ ....||+||+|+.||+ .+|+++
T Consensus 2 ~~~~Ilivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~~~~~~-----------~~~~~DlvllD~~l~~~~~~~g~~~ 70 (216)
T PRK10840 2 NNMNVIIADDHPIVLFGIRKSLEQIEWVNVVGEFEDSTALINNL-----------PKLDAHVLITDLSMPGDKYGDGITL 70 (216)
T ss_pred CceEEEEECCcHHHHHHHHHHHhcCCCCEEEEEECCHHHHHHHH-----------HhCCCCEEEEeCcCCCCCCCCHHHH
Confidence 358999999999999999999987654 3 66789999999987 4557999999999999 599999
Q ss_pred HHHHhccCCCCCCcEEEEeCCCcHHHHHHHHHcCCceEEeCCCCHHHHHHHHHHHhh
Q 026776 103 LKKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVKLSDVKRIKDYLTR 159 (233)
Q Consensus 103 l~~Lr~~~~~~~~piIvlt~~~~~~~~~~al~~Ga~dyL~KP~~~~eL~~~~~~l~~ 159 (233)
+++|+...+ .++||+++.+.+......+++.|+++|+.||.+.++|..+++.+..
T Consensus 71 ~~~l~~~~~--~~~iIvls~~~~~~~~~~a~~~Ga~~yl~K~~~~~~l~~ai~~v~~ 125 (216)
T PRK10840 71 IKYIKRHFP--SLSIIVLTMNNNPAILSAVLDLDIEGIVLKQGAPTDLPKALAALQK 125 (216)
T ss_pred HHHHHHHCC--CCcEEEEEecCCHHHHHHHHHCCCeEEEECCCCHHHHHHHHHHHHC
Confidence 999997654 8899999999998889999999999999999999999887776654
No 28
>PRK11083 DNA-binding response regulator CreB; Provisional
Probab=99.70 E-value=1.2e-15 Score=124.62 Aligned_cols=118 Identities=24% Similarity=0.336 Sum_probs=105.4
Q ss_pred CcEEEEEeCCHHHHHHHHHHHhhcCCEEEEECCHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCCCCCHHHHHHHHhc
Q 026776 29 EVHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKKIKD 108 (233)
Q Consensus 29 ~~~ILIVddd~~~~~~l~~~L~~~g~~v~~a~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp~~~g~~ll~~Lr~ 108 (233)
.++||||||++..+..+...|...|+.+..+.++.+++..+ ....||++|+|+.|++.+|+++++.+++
T Consensus 3 ~~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~-----------~~~~~dlvl~d~~~~~~~g~~~~~~l~~ 71 (228)
T PRK11083 3 QPTILLVEDEQAIADTLVYALQSEGFTVEWFERGLPALDKL-----------RQQPPDLVILDVGLPDISGFELCRQLLA 71 (228)
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHCCCEEEEEcCHHHHHHHH-----------hcCCCCEEEEeCCCCCCCHHHHHHHHHh
Confidence 46899999999999999999998999999999999999887 4557999999999999999999999998
Q ss_pred cCCCCCCcEEEEeCCCcHHHHHHHHHcCCceEEeCCCCHHHHHHHHHHHhh
Q 026776 109 SSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVKLSDVKRIKDYLTR 159 (233)
Q Consensus 109 ~~~~~~~piIvlt~~~~~~~~~~al~~Ga~dyL~KP~~~~eL~~~~~~l~~ 159 (233)
..+ .+|+|+++...+......+++.|+++|+.||++..+|...+..+.+
T Consensus 72 ~~~--~~~ii~ls~~~~~~~~~~a~~~Ga~~~l~kp~~~~~l~~~i~~~~~ 120 (228)
T PRK11083 72 FHP--ALPVIFLTARSDEVDRLVGLEIGADDYVAKPFSPREVAARVRTILR 120 (228)
T ss_pred hCC--CCCEEEEEcCCcHHHHHHHhhcCCCeEEECCCCHHHHHHHHHHHHC
Confidence 654 8899999999888888899999999999999999999776665544
No 29
>PRK10766 DNA-binding transcriptional regulator TorR; Provisional
Probab=99.69 E-value=1.4e-15 Score=124.27 Aligned_cols=117 Identities=23% Similarity=0.392 Sum_probs=104.7
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhcCCEEEEECCHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCCCCCHHHHHHHHhcc
Q 026776 30 VHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKKIKDS 109 (233)
Q Consensus 30 ~~ILIVddd~~~~~~l~~~L~~~g~~v~~a~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp~~~g~~ll~~Lr~~ 109 (233)
.+||+|||+...+..+...|...|+.+..+.++.+++..+ ....||+|++|+.||+++|+++++.++..
T Consensus 3 ~~iLlv~d~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~-----------~~~~~dlvild~~l~~~~g~~~~~~lr~~ 71 (221)
T PRK10766 3 YHILVVEDEPVTRARLQGYFEQEGYTVSEAASGAGMREIM-----------QNQHVDLILLDINLPGEDGLMLTRELRSR 71 (221)
T ss_pred CEEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHH-----------hcCCCCEEEEeCCCCCCCHHHHHHHHHhC
Confidence 6799999999999999999999999999999999999887 45579999999999999999999999975
Q ss_pred CCCCCCcEEEEeCCCcHHHHHHHHHcCCceEEeCCCCHHHHHHHHHHHhhh
Q 026776 110 SALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVKLSDVKRIKDYLTRD 160 (233)
Q Consensus 110 ~~~~~~piIvlt~~~~~~~~~~al~~Ga~dyL~KP~~~~eL~~~~~~l~~~ 160 (233)
. .+|+|++++..+......+++.|+++|+.||++..+|...+..+.++
T Consensus 72 -~--~~~ii~l~~~~~~~~~~~~l~~Ga~d~l~kP~~~~~L~~~i~~~~~r 119 (221)
T PRK10766 72 -S--TVGIILVTGRTDSIDRIVGLEMGADDYVTKPLELRELLVRVKNLLWR 119 (221)
T ss_pred -C--CCCEEEEECCCcHHHHHHHHHcCCCcEEeCCCCHHHHHHHHHHHHhh
Confidence 3 78999999999888889999999999999999999987666555443
No 30
>TIGR03787 marine_sort_RR proteobacterial dedicated sortase system response regulator. This model describes a family of DNA-binding response regulator proteins, associated with an adjacent histidine kinase (TIGR03785) to form a two-component system. This system co-occurs with, and often is adjacent to, a proteobacterial variant form of the protein sorting transpeptidase called sortase (TIGR03784), and a single target protein for the sortase. We give this protein the gene symbol pdsR, for Proteobacterial Dedicated Sortase system Response regulator.
Probab=99.68 E-value=1.9e-15 Score=123.84 Aligned_cols=117 Identities=21% Similarity=0.266 Sum_probs=104.2
Q ss_pred EEEEEeCCHHHHHHHHHHHhhcCCEEEEECCHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCCC--CCHHHHHHHHhc
Q 026776 31 HVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPG--MTGYELLKKIKD 108 (233)
Q Consensus 31 ~ILIVddd~~~~~~l~~~L~~~g~~v~~a~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp~--~~g~~ll~~Lr~ 108 (233)
+|||+||+...+..+...|+..|+.+..+.++.+++..+ ....||+|++|+.||+ .+|+++++.++.
T Consensus 2 ~iLivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~-----------~~~~~dlvild~~l~~~~~~g~~~~~~i~~ 70 (227)
T TIGR03787 2 RIAIVEDEAAIRENYADALKRQGYQVTTYADRPSAMQAF-----------RQRLPDLAIIDIGLGEEIDGGFMLCQDLRS 70 (227)
T ss_pred eEEEEeCCHHHHHHHHHHHHHCCcEEEEecCHHHHHHHH-----------HhCCCCEEEEECCCCCCCCCHHHHHHHHHh
Confidence 599999999999999999999999999999999999887 4557999999999997 589999999997
Q ss_pred cCCCCCCcEEEEeCCCcHHHHHHHHHcCCceEEeCCCCHHHHHHHHHHHhhh
Q 026776 109 SSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVKLSDVKRIKDYLTRD 160 (233)
Q Consensus 109 ~~~~~~~piIvlt~~~~~~~~~~al~~Ga~dyL~KP~~~~eL~~~~~~l~~~ 160 (233)
..+ .+|+|++++..+......++++|+++|+.||++.++|...+..+.+.
T Consensus 71 ~~~--~~pii~ls~~~~~~~~~~~~~~Ga~~~l~kp~~~~~l~~~i~~~~~~ 120 (227)
T TIGR03787 71 LSA--TLPIIFLTARDSDFDTVSGLRLGADDYLTKDISLPHLLARITALFRR 120 (227)
T ss_pred cCC--CCCEEEEECCCCHHHHHHHHhcCCCEEEECCCCHHHHHHHHHHHHHh
Confidence 654 78999999999888899999999999999999999997766665543
No 31
>PRK15347 two component system sensor kinase SsrA; Provisional
Probab=99.68 E-value=1.1e-15 Score=149.31 Aligned_cols=121 Identities=26% Similarity=0.445 Sum_probs=108.6
Q ss_pred CCCcEEEEEeCCHHHHHHHHHHHhhcCCEEEEECCHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCCCCCHHHHHHHH
Q 026776 27 TEEVHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKKI 106 (233)
Q Consensus 27 ~~~~~ILIVddd~~~~~~l~~~L~~~g~~v~~a~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp~~~g~~ll~~L 106 (233)
..+++||||||++..+..+..+|...|+++..+.++.+|++.+ ....||+||+|+.||+++|+++++.|
T Consensus 688 ~~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~a~~~~~al~~~-----------~~~~~dlil~D~~mp~~~G~~~~~~i 756 (921)
T PRK15347 688 PWQLQILLVDDVETNRDIIGMMLVELGQQVTTAASGTEALELG-----------RQHRFDLVLMDIRMPGLDGLETTQLW 756 (921)
T ss_pred cccCCEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHH-----------hcCCCCEEEEeCCCCCCCHHHHHHHH
Confidence 3457999999999999999999999999999999999999988 55679999999999999999999999
Q ss_pred hccC--CCCCCcEEEEeCCCcHHHHHHHHHcCCceEEeCCCCHHHHHHHHHHHh
Q 026776 107 KDSS--ALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVKLSDVKRIKDYLT 158 (233)
Q Consensus 107 r~~~--~~~~~piIvlt~~~~~~~~~~al~~Ga~dyL~KP~~~~eL~~~~~~l~ 158 (233)
|+.. ....+|||++|++.+.....++++.|+++||.||++.++|...+..+.
T Consensus 757 r~~~~~~~~~~pii~lt~~~~~~~~~~~~~~G~~~~l~KP~~~~~L~~~l~~~~ 810 (921)
T PRK15347 757 RDDPNNLDPDCMIVALTANAAPEEIHRCKKAGMNHYLTKPVTLAQLARALELAA 810 (921)
T ss_pred HhchhhcCCCCcEEEEeCCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHH
Confidence 9743 124789999999999999999999999999999999999987776543
No 32
>PRK10430 DNA-binding transcriptional activator DcuR; Provisional
Probab=99.68 E-value=1.8e-15 Score=126.23 Aligned_cols=119 Identities=22% Similarity=0.318 Sum_probs=102.4
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhc-CCEE-EEECCHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCCCCCHHHHHHHHh
Q 026776 30 VHVLAVDDSFVDRKVIERLLTIS-SCKV-TAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKKIK 107 (233)
Q Consensus 30 ~~ILIVddd~~~~~~l~~~L~~~-g~~v-~~a~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp~~~g~~ll~~Lr 107 (233)
++||||||++..+..+..+|... ++.+ ..+.++.+++..+.. ....||+||+|+.||+++|+++++.|+
T Consensus 2 ~~VLivdd~~~~~~~l~~~L~~~~~~~~~~~~~~~~~a~~~~~~---------~~~~~DlvilD~~~p~~~G~eli~~l~ 72 (239)
T PRK10430 2 INVLIVDDDAMVAELNRRYVAQIPGFQCCGTASTLEQAKEIIFN---------SDTPIDLILLDIYMQQENGLDLLPVLH 72 (239)
T ss_pred eeEEEEcCCHHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHHHh---------cCCCCCEEEEecCCCCCCcHHHHHHHH
Confidence 68999999999999999999764 6654 468899999887721 134699999999999999999999999
Q ss_pred ccCCCCCCcEEEEeCCCcHHHHHHHHHcCCceEEeCCCCHHHHHHHHHHHhh
Q 026776 108 DSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVKLSDVKRIKDYLTR 159 (233)
Q Consensus 108 ~~~~~~~~piIvlt~~~~~~~~~~al~~Ga~dyL~KP~~~~eL~~~~~~l~~ 159 (233)
+..+ .+++|++++..+......+++.|+++|+.||++.++|...+..+..
T Consensus 73 ~~~~--~~~vI~ls~~~~~~~~~~al~~Ga~~yl~Kp~~~~~l~~~i~~~~~ 122 (239)
T PRK10430 73 EAGC--KSDVIVISSAADAATIKDSLHYGVVDYLIKPFQASRFEEALTGWRQ 122 (239)
T ss_pred hhCC--CCCEEEEECCCcHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHH
Confidence 8655 8899999999999999999999999999999999999877765543
No 33
>PRK10701 DNA-binding transcriptional regulator RstA; Provisional
Probab=99.68 E-value=2.3e-15 Score=124.81 Aligned_cols=117 Identities=22% Similarity=0.257 Sum_probs=103.7
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhcCCEEEEECCHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCCCCCHHHHHHHHhcc
Q 026776 30 VHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKKIKDS 109 (233)
Q Consensus 30 ~~ILIVddd~~~~~~l~~~L~~~g~~v~~a~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp~~~g~~ll~~Lr~~ 109 (233)
.+||+|||++..+..+...|+..|+.+..+.++.+++..+ ....||+||+|+.||+++|+++++.+++.
T Consensus 2 ~~iLivedd~~~~~~l~~~L~~~g~~v~~~~~~~~~l~~~-----------~~~~~dlvild~~l~~~~g~~~~~~ir~~ 70 (240)
T PRK10701 2 NKIVFVEDDAEVGSLIAAYLAKHDIDVTVEPRGDRAEATI-----------LREQPDLVLLDIMLPGKDGMTICRDLRPK 70 (240)
T ss_pred ceEEEEeCCHHHHHHHHHHHHHcCCEEEEeCCHHHHHHHH-----------hhCCCCEEEEeCCCCCCCHHHHHHHHHhc
Confidence 4799999999999999999999999999999999999987 45679999999999999999999999974
Q ss_pred CCCCCCcEEEEeCCCcHHHHHHHHHcCCceEEeCCCCHHHHHHHHHHHhhh
Q 026776 110 SALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVKLSDVKRIKDYLTRD 160 (233)
Q Consensus 110 ~~~~~~piIvlt~~~~~~~~~~al~~Ga~dyL~KP~~~~eL~~~~~~l~~~ 160 (233)
. ..|+|+++...+......+++.|+++|+.||++..+|...+..+.+.
T Consensus 71 ~---~~pii~l~~~~~~~~~~~~~~~Ga~d~l~kP~~~~~l~~~i~~~l~~ 118 (240)
T PRK10701 71 W---QGPIVLLTSLDSDMNHILALEMGACDYILKTTPPAVLLARLRLHLRQ 118 (240)
T ss_pred C---CCCEEEEECCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHhc
Confidence 2 67999999888888888999999999999999999987666555443
No 34
>PRK11517 transcriptional regulatory protein YedW; Provisional
Probab=99.68 E-value=2.9e-15 Score=122.21 Aligned_cols=116 Identities=25% Similarity=0.456 Sum_probs=104.0
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhcCCEEEEECCHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCCCCCHHHHHHHHhcc
Q 026776 30 VHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKKIKDS 109 (233)
Q Consensus 30 ~~ILIVddd~~~~~~l~~~L~~~g~~v~~a~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp~~~g~~ll~~Lr~~ 109 (233)
|+||+|||++..+..+...|...|+.+..+.++.+++..+ ....||+|++|+.||+++|+++++.++..
T Consensus 1 m~iliv~~~~~~~~~l~~~L~~~~~~v~~~~~~~~~l~~~-----------~~~~~dlvi~d~~~~~~~g~~~~~~l~~~ 69 (223)
T PRK11517 1 MKILLIEDNQRTQEWVTQGLSEAGYVIDAVSDGRDGLYLA-----------LKDDYALIILDIMLPGMDGWQILQTLRTA 69 (223)
T ss_pred CEEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHH-----------hcCCCCEEEEECCCCCCCHHHHHHHHHcC
Confidence 4799999999999999999999999999999999999887 45679999999999999999999999974
Q ss_pred CCCCCCcEEEEeCCCcHHHHHHHHHcCCceEEeCCCCHHHHHHHHHHHhh
Q 026776 110 SALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVKLSDVKRIKDYLTR 159 (233)
Q Consensus 110 ~~~~~~piIvlt~~~~~~~~~~al~~Ga~dyL~KP~~~~eL~~~~~~l~~ 159 (233)
. .+|+|++++..+......+++.|+++|+.||++.++|...+..+.+
T Consensus 70 ~---~~~ii~ls~~~~~~~~~~a~~~Ga~~~l~kp~~~~~l~~~i~~~~~ 116 (223)
T PRK11517 70 K---QTPVICLTARDSVDDRVRGLDSGANDYLVKPFSFSELLARVRAQLR 116 (223)
T ss_pred C---CCCEEEEECCCCHHHHHHHHhcCCCEEEECCCCHHHHHHHHHHHHc
Confidence 2 6899999999898999999999999999999999998766655443
No 35
>TIGR02875 spore_0_A sporulation transcription factor Spo0A. Spo0A, the stage 0 sporulation protein A, is a transcription factor critical for the initiation of sporulation. It contains a response regulator receiver domain (pfam00072). In Bacillus subtilis, it works together with response regulator Spo0F and the phosphotransferase Spo0B, both of which are missing from at least some sporulating species and thus not part of the endospore forming bacteria minimal gene set. Spo0A, however, is universal among endospore-forming species.
Probab=99.68 E-value=2.2e-15 Score=127.14 Aligned_cols=119 Identities=19% Similarity=0.325 Sum_probs=103.3
Q ss_pred CcEEEEEeCCHHHHHHHHHHHhhc-CCEE-EEECCHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCCCCCHHHHHHHH
Q 026776 29 EVHVLAVDDSFVDRKVIERLLTIS-SCKV-TAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKKI 106 (233)
Q Consensus 29 ~~~ILIVddd~~~~~~l~~~L~~~-g~~v-~~a~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp~~~g~~ll~~L 106 (233)
+++|||+||++..+..+...|... ++.+ ..+.++.++++.+ ....||+||+|+.||+++|+++++.+
T Consensus 2 ~~~vLivdd~~~~~~~l~~~L~~~~~~~~~~~a~~~~eal~~l-----------~~~~~DlvllD~~mp~~dG~~~l~~i 70 (262)
T TIGR02875 2 KIRIVIADDNKEFCNLLKEYLAAQPDMEVVGVAHNGVDALELI-----------KEQQPDVVVLDIIMPHLDGIGVLEKL 70 (262)
T ss_pred CcEEEEEcCCHHHHHHHHHHHhcCCCeEEEEEeCCHHHHHHHH-----------HhcCCCEEEEeCCCCCCCHHHHHHHH
Confidence 589999999999999999999764 4554 4689999999988 45679999999999999999999999
Q ss_pred hccCCCCCCcEEEEeCCCcHHHHHHHHHcCCceEEeCCCCHHHHHHHHHHHh
Q 026776 107 KDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVKLSDVKRIKDYLT 158 (233)
Q Consensus 107 r~~~~~~~~piIvlt~~~~~~~~~~al~~Ga~dyL~KP~~~~eL~~~~~~l~ 158 (233)
++.......|+|++++.........+++.|+++|+.||++.++|...+..+.
T Consensus 71 ~~~~~~~~~~iI~lt~~~~~~~~~~~~~~G~~~~l~KP~~~~~L~~~i~~~~ 122 (262)
T TIGR02875 71 NEIELSARPRVIMLSAFGQEKITQRAVALGADYYVLKPFDLEILAARIRQLA 122 (262)
T ss_pred HhhccccCCeEEEEeCCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHH
Confidence 9876533589999999998888899999999999999999999877666543
No 36
>CHL00148 orf27 Ycf27; Reviewed
Probab=99.68 E-value=3.6e-15 Score=123.01 Aligned_cols=118 Identities=27% Similarity=0.486 Sum_probs=105.5
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHhhcCCEEEEECCHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCCCCCHHHHHHHHh
Q 026776 28 EEVHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKKIK 107 (233)
Q Consensus 28 ~~~~ILIVddd~~~~~~l~~~L~~~g~~v~~a~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp~~~g~~ll~~Lr 107 (233)
..++||++||++..+..+...|...|+.+..+.++.+++..+ ....||+|++|+.||+.+|+++++.++
T Consensus 5 ~~~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~~l~~~-----------~~~~~d~illd~~~~~~~g~~~~~~l~ 73 (240)
T CHL00148 5 SKEKILVVDDEAYIRKILETRLSIIGYEVITASDGEEALKLF-----------RKEQPDLVILDVMMPKLDGYGVCQEIR 73 (240)
T ss_pred CCceEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHH-----------HhcCCCEEEEeCCCCCCCHHHHHHHHH
Confidence 457999999999999999999998999999899999999877 455799999999999999999999999
Q ss_pred ccCCCCCCcEEEEeCCCcHHHHHHHHHcCCceEEeCCCCHHHHHHHHHHHhh
Q 026776 108 DSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVKLSDVKRIKDYLTR 159 (233)
Q Consensus 108 ~~~~~~~~piIvlt~~~~~~~~~~al~~Ga~dyL~KP~~~~eL~~~~~~l~~ 159 (233)
.. . .+|+|+++++.+......+++.|+++|+.||++.++|...+..+.+
T Consensus 74 ~~-~--~~~ii~ls~~~~~~~~~~~~~~Ga~~~l~kp~~~~~L~~~i~~~~~ 122 (240)
T CHL00148 74 KE-S--DVPIIMLTALGDVSDRITGLELGADDYVVKPFSPKELEARIRSVLR 122 (240)
T ss_pred hc-C--CCcEEEEECCCCHHhHHHHHHCCCCEEEeCCCCHHHHHHHHHHHHh
Confidence 74 3 7899999999988888999999999999999999999776665544
No 37
>PRK13856 two-component response regulator VirG; Provisional
Probab=99.67 E-value=3.5e-15 Score=124.03 Aligned_cols=115 Identities=31% Similarity=0.449 Sum_probs=101.1
Q ss_pred EEEEEeCCHHHHHHHHHHHhhcCCEEEEECCHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCCCCCHHHHHHHHhccC
Q 026776 31 HVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKKIKDSS 110 (233)
Q Consensus 31 ~ILIVddd~~~~~~l~~~L~~~g~~v~~a~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp~~~g~~ll~~Lr~~~ 110 (233)
+||+|||++..+..+...|...||.+..+.++.+++..+ ....||+||+|+.||+++|+++++.++...
T Consensus 3 ~ILived~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~-----------~~~~~dlvi~d~~l~~~~g~~l~~~i~~~~ 71 (241)
T PRK13856 3 HVLVIDDDVAMRHLIVEYLTIHAFKVTAVADSQQFNRVL-----------ASETVDVVVVDLNLGREDGLEIVRSLATKS 71 (241)
T ss_pred eEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHH-----------hhCCCCEEEEeCCCCCCCHHHHHHHHHhcC
Confidence 799999999999999999999999999999999999887 456799999999999999999999998642
Q ss_pred CCCCCcEEEEeCCC-cHHHHHHHHHcCCceEEeCCCCHHHHHHHHHHHhh
Q 026776 111 ALREIPVVIMSSEN-ILARIDRCLEDGAEDFIVKPVKLSDVKRIKDYLTR 159 (233)
Q Consensus 111 ~~~~~piIvlt~~~-~~~~~~~al~~Ga~dyL~KP~~~~eL~~~~~~l~~ 159 (233)
.+|+|++++.. +......+++.|+++|+.||++..+|...++.+.+
T Consensus 72 ---~~pii~lt~~~~~~~~~~~~l~~Ga~~yl~kP~~~~eL~~~i~~~l~ 118 (241)
T PRK13856 72 ---DVPIIIISGDRLEEADKVVALELGATDFIAKPFGTREFLARIRVALR 118 (241)
T ss_pred ---CCcEEEEECCCCcHHHHHHHHhcCcCeEEeCCCCHHHHHHHHHHHHh
Confidence 68999999854 56667789999999999999999998766555444
No 38
>PRK09958 DNA-binding transcriptional activator EvgA; Provisional
Probab=99.67 E-value=3.6e-15 Score=120.14 Aligned_cols=117 Identities=21% Similarity=0.376 Sum_probs=104.9
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhcCCEEE-EECCHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCCCCCHHHHHHHHhc
Q 026776 30 VHVLAVDDSFVDRKVIERLLTISSCKVT-AVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKKIKD 108 (233)
Q Consensus 30 ~~ILIVddd~~~~~~l~~~L~~~g~~v~-~a~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp~~~g~~ll~~Lr~ 108 (233)
++|+++||++..+..+...|+..|+.+. .+.++.+++..+ ....||+|++|+.+++++|+++++.++.
T Consensus 1 m~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~~-----------~~~~~dlvi~d~~~~~~~g~~~~~~l~~ 69 (204)
T PRK09958 1 MNAIIIDDHPLAIAAIRNLLIKNDIEILAELTEGGSAVQRV-----------ETLKPDIVIIDVDIPGVNGIQVLETLRK 69 (204)
T ss_pred CcEEEECCcHHHHHHHHHHHhcCCCEEEEEeCCHHHHHHHH-----------HccCCCEEEEeCCCCCCCHHHHHHHHHh
Confidence 5799999999999999999998899887 689999999887 4557999999999999999999999998
Q ss_pred cCCCCCCcEEEEeCCCcHHHHHHHHHcCCceEEeCCCCHHHHHHHHHHHhh
Q 026776 109 SSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVKLSDVKRIKDYLTR 159 (233)
Q Consensus 109 ~~~~~~~piIvlt~~~~~~~~~~al~~Ga~dyL~KP~~~~eL~~~~~~l~~ 159 (233)
..+ ..++|++++..+.....++++.|+++|+.||++.++|...++.+.+
T Consensus 70 ~~~--~~~ii~ls~~~~~~~~~~~~~~ga~~~i~kp~~~~~l~~~i~~~~~ 118 (204)
T PRK09958 70 RQY--SGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKN 118 (204)
T ss_pred hCC--CCeEEEEeCCCCHHHHHHHHHCCCCEEEecCCCHHHHHHHHHHHHc
Confidence 654 6789999998888888999999999999999999999877776654
No 39
>PRK10955 DNA-binding transcriptional regulator CpxR; Provisional
Probab=99.67 E-value=4.5e-15 Score=121.78 Aligned_cols=115 Identities=26% Similarity=0.429 Sum_probs=102.7
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhcCCEEEEECCHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCCCCCHHHHHHHHhcc
Q 026776 30 VHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKKIKDS 109 (233)
Q Consensus 30 ~~ILIVddd~~~~~~l~~~L~~~g~~v~~a~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp~~~g~~ll~~Lr~~ 109 (233)
.+||||||++..+..+...|...|+.+..+.++.+++..+ . ..||+||+|+.||+++|+++++.++..
T Consensus 2 ~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~-----------~-~~~d~vl~d~~~~~~~g~~~~~~l~~~ 69 (232)
T PRK10955 2 NKILLVDDDRELTSLLKELLEMEGFNVIVAHDGEQALDLL-----------D-DSIDLLLLDVMMPKKNGIDTLKELRQT 69 (232)
T ss_pred ceEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHh-----------h-cCCCEEEEeCCCCCCcHHHHHHHHHhc
Confidence 4799999999999999999999999999999999999876 3 369999999999999999999999975
Q ss_pred CCCCCCcEEEEeCCCcHHHHHHHHHcCCceEEeCCCCHHHHHHHHHHHhh
Q 026776 110 SALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVKLSDVKRIKDYLTR 159 (233)
Q Consensus 110 ~~~~~~piIvlt~~~~~~~~~~al~~Ga~dyL~KP~~~~eL~~~~~~l~~ 159 (233)
. .+|+|++++..+......+++.|+++|+.||++.++|...+..+.+
T Consensus 70 ~---~~~ii~lt~~~~~~~~~~~~~~ga~~~l~kp~~~~~l~~~i~~~~~ 116 (232)
T PRK10955 70 H---QTPVIMLTARGSELDRVLGLELGADDYLPKPFNDRELVARIRAILR 116 (232)
T ss_pred C---CCcEEEEECCCCHHHHHHHHHcCCCEEEcCCCCHHHHHHHHHHHHh
Confidence 4 3899999998888888899999999999999999999776665544
No 40
>PRK11466 hybrid sensory histidine kinase TorS; Provisional
Probab=99.66 E-value=1.8e-15 Score=147.95 Aligned_cols=121 Identities=17% Similarity=0.275 Sum_probs=108.8
Q ss_pred CCCcEEEEEeCCHHHHHHHHHHHhhcCCEEEEECCHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCCCCCHHHHHHHH
Q 026776 27 TEEVHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKKI 106 (233)
Q Consensus 27 ~~~~~ILIVddd~~~~~~l~~~L~~~g~~v~~a~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp~~~g~~ll~~L 106 (233)
..+.+||||||++.++..+..+|...||.|..+.++.++++.+. ....||+||+|+.||+++|+++++.|
T Consensus 679 ~~~~~vLivdD~~~~~~~l~~~L~~~g~~v~~a~~~~~al~~~~----------~~~~~Dlvl~D~~mp~~~G~~~~~~l 748 (914)
T PRK11466 679 LDGLRLLLIEDNPLTQRITAEMLNTSGAQVVAVGNAAQALETLQ----------NSEPFAAALVDFDLPDYDGITLARQL 748 (914)
T ss_pred cCCcceEEEeCCHHHHHHHHHHHHhcCCceEEeCCHHHHHHHHH----------cCCCCCEEEEeCCCCCCCHHHHHHHH
Confidence 34678999999999999999999999999999999999999873 23468999999999999999999999
Q ss_pred hccCCCCCCcEEEEeCCCcHHHHHHHHHcCCceEEeCCCCHHHHHHHHHHHhh
Q 026776 107 KDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVKLSDVKRIKDYLTR 159 (233)
Q Consensus 107 r~~~~~~~~piIvlt~~~~~~~~~~al~~Ga~dyL~KP~~~~eL~~~~~~l~~ 159 (233)
++..+ .+|+|++|++.......++++.|+++||.||++.++|...+..+.+
T Consensus 749 r~~~~--~~~ii~~t~~~~~~~~~~~~~~g~~~~l~KP~~~~~L~~~i~~~~~ 799 (914)
T PRK11466 749 AQQYP--SLVLIGFSAHVIDETLRQRTSSLFRGIIPKPVPREVLGQLLAHYLQ 799 (914)
T ss_pred HhhCC--CCCEEEEeCCCchhhHHHHHhcCcCCEEeCCCCHHHHHHHHHHHhh
Confidence 98654 8999999999988889999999999999999999999887766654
No 41
>TIGR02956 TMAO_torS TMAO reductase sytem sensor TorS. This protein, TorS, is part of a regulatory system for the torCAD operon that encodes the pterin molybdenum cofactor-containing enzyme trimethylamine-N-oxide (TMAO) reductase (TorA), a cognate chaperone (TorD), and a penta-haem cytochrome (TorC). TorS works together with the inducer-binding protein TorT and the response regulator TorR. TorS contains histidine kinase ATPase (pfam02518), HAMP (pfam00672), phosphoacceptor (pfam00512), and phosphotransfer (pfam01627) domains and a response regulator receiver domain (pfam00072).
Probab=99.66 E-value=2.7e-15 Score=147.46 Aligned_cols=121 Identities=24% Similarity=0.368 Sum_probs=109.2
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHhhcCCEEEEECCHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCCCCCHHHHHHHHh
Q 026776 28 EEVHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKKIK 107 (233)
Q Consensus 28 ~~~~ILIVddd~~~~~~l~~~L~~~g~~v~~a~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp~~~g~~ll~~Lr 107 (233)
...+||||||++.++..+..+|+..||.|..+.++.++++.+ ....||+||+|+.||+++|+++++.|+
T Consensus 701 ~~~~iLvvdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l-----------~~~~~dlvl~D~~mp~~~g~~~~~~ir 769 (968)
T TIGR02956 701 PPQRVLLVEDNEVNQMVAQGFLTRLGHKVTLAESGQSALECF-----------HQHAFDLALLDINLPDGDGVTLLQQLR 769 (968)
T ss_pred cccceEEEcCcHHHHHHHHHHHHHcCCEEEEECCHHHHHHHH-----------HCCCCCEEEECCCCCCCCHHHHHHHHH
Confidence 446899999999999999999999999999999999999998 456799999999999999999999999
Q ss_pred ccCCCCC-CcEEEEeCCCcHHHHHHHHHcCCceEEeCCCCHHHHHHHHHHHhh
Q 026776 108 DSSALRE-IPVVIMSSENILARIDRCLEDGAEDFIVKPVKLSDVKRIKDYLTR 159 (233)
Q Consensus 108 ~~~~~~~-~piIvlt~~~~~~~~~~al~~Ga~dyL~KP~~~~eL~~~~~~l~~ 159 (233)
+...... +|||++|++.......++++.|+++||.||++..+|...+..+..
T Consensus 770 ~~~~~~~~~pii~lta~~~~~~~~~~~~~G~~~~l~KP~~~~~L~~~l~~~~~ 822 (968)
T TIGR02956 770 AIYGAKNEVKFIAFSAHVFNEDVAQYLAAGFDGFLAKPVVEEQLTAMIAVILA 822 (968)
T ss_pred hCccccCCCeEEEEECCCCHHHHHHHHHCCCCEEEeCCCCHHHHHHHHHHHhc
Confidence 8665323 899999999999999999999999999999999999887766543
No 42
>TIGR01387 cztR_silR_copR heavy metal response regulator. Members of this family contain a response regulator receiver domain (Pfam:PF00072) and an associated transcriptional regulatory region (Pfam:PF00486). This group is separated phylogenetically from related proteins with similar architecture and contains a number of proteins associated with heavy metal resistance efflux systems for copper, silver, cadmium, and/or zinc. Most members encoded by genes adjacent to genes for encoding a member of the heavy metal sensor histidine kinase family (TIGRFAMs:TIGR01386), its partner in the two-component response regulator system.
Probab=99.65 E-value=8.3e-15 Score=118.81 Aligned_cols=115 Identities=30% Similarity=0.494 Sum_probs=103.6
Q ss_pred EEEEeCCHHHHHHHHHHHhhcCCEEEEECCHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCCCCCHHHHHHHHhccCC
Q 026776 32 VLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKKIKDSSA 111 (233)
Q Consensus 32 ILIVddd~~~~~~l~~~L~~~g~~v~~a~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp~~~g~~ll~~Lr~~~~ 111 (233)
||++||++..+..+...|...|+.+..+.++.+++..+ ....||+|++|+.||+++|+++++.++...+
T Consensus 1 iliidd~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~-----------~~~~~dlvl~d~~~~~~~g~~~~~~l~~~~~ 69 (218)
T TIGR01387 1 ILVVEDEQKTAEYLQQGLSESGYVVDAASNGRDGLHLA-----------LKDDYDLIILDVMLPGMDGWQILQTLRRSGK 69 (218)
T ss_pred CEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHH-----------hcCCCCEEEEeCCCCCCCHHHHHHHHHccCC
Confidence 58999999999999999999999999999999999887 4567999999999999999999999997654
Q ss_pred CCCCcEEEEeCCCcHHHHHHHHHcCCceEEeCCCCHHHHHHHHHHHhh
Q 026776 112 LREIPVVIMSSENILARIDRCLEDGAEDFIVKPVKLSDVKRIKDYLTR 159 (233)
Q Consensus 112 ~~~~piIvlt~~~~~~~~~~al~~Ga~dyL~KP~~~~eL~~~~~~l~~ 159 (233)
.+|+|+++...+......+++.|+++|+.||++.++|...+..+.+
T Consensus 70 --~~~iivls~~~~~~~~~~~~~~Ga~~~l~kp~~~~~l~~~i~~~~~ 115 (218)
T TIGR01387 70 --QTPVLFLTARDSVADKVKGLDLGADDYLVKPFSFSELLARVRTLLR 115 (218)
T ss_pred --CCcEEEEEcCCCHHHHHHHHHcCCCeEEECCCCHHHHHHHHHHHhc
Confidence 8899999999999999999999999999999999999776665544
No 43
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=99.64 E-value=7.3e-15 Score=134.02 Aligned_cols=117 Identities=30% Similarity=0.452 Sum_probs=106.4
Q ss_pred CcEEEEEeCCHHHHHHHHHHHhhcCCEEEEECCHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCCCCCHHHHHHHHhc
Q 026776 29 EVHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKKIKD 108 (233)
Q Consensus 29 ~~~ILIVddd~~~~~~l~~~L~~~g~~v~~a~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp~~~g~~ll~~Lr~ 108 (233)
+.+||||||++..+..+...|...||.+..+.++.+++..+ ....||+||+|+.||+++|+++++.++.
T Consensus 3 ~~~ILiVdd~~~~~~~L~~~L~~~g~~v~~~~s~~~al~~l-----------~~~~~DlvllD~~lp~~dgl~~l~~ir~ 71 (469)
T PRK10923 3 RGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGNEVLEAL-----------ASKTPDVLLSDIRMPGMDGLALLKQIKQ 71 (469)
T ss_pred CCeEEEEECCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHH-----------hcCCCCEEEECCCCCCCCHHHHHHHHHh
Confidence 46899999999999999999999999999999999999988 4567999999999999999999999998
Q ss_pred cCCCCCCcEEEEeCCCcHHHHHHHHHcCCceEEeCCCCHHHHHHHHHHHh
Q 026776 109 SSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVKLSDVKRIKDYLT 158 (233)
Q Consensus 109 ~~~~~~~piIvlt~~~~~~~~~~al~~Ga~dyL~KP~~~~eL~~~~~~l~ 158 (233)
..+ .+|+|+++++.+......+++.|+++|+.||++.+++...+..+.
T Consensus 72 ~~~--~~pvIvlt~~~~~~~~~~a~~~Ga~~~l~KP~~~~~L~~~i~~~l 119 (469)
T PRK10923 72 RHP--MLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAI 119 (469)
T ss_pred hCC--CCeEEEEECCCCHHHHHHHHhcCcceEEecCCcHHHHHHHHHHHH
Confidence 654 789999999999999999999999999999999999877665543
No 44
>PRK11091 aerobic respiration control sensor protein ArcB; Provisional
Probab=99.64 E-value=5.4e-15 Score=142.49 Aligned_cols=121 Identities=20% Similarity=0.384 Sum_probs=105.6
Q ss_pred CCCcEEEEEeCCHHHHHHHHHHHhhcCCEEEEECCHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCCCCCHHHHHHHH
Q 026776 27 TEEVHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKKI 106 (233)
Q Consensus 27 ~~~~~ILIVddd~~~~~~l~~~L~~~g~~v~~a~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp~~~g~~ll~~L 106 (233)
...++||||||++..+..+..+|+..||.+..+.++.++++.+ ....||+||+|+.||+++|+++++.|
T Consensus 523 ~~~~~ILivdD~~~~~~~l~~~L~~~g~~v~~a~~~~eal~~~-----------~~~~~Dlvl~D~~mp~~~G~e~~~~i 591 (779)
T PRK11091 523 LPALNILLVEDIELNVIVARSVLEKLGNSVDVAMTGKEALEMF-----------DPDEYDLVLLDIQLPDMTGLDIAREL 591 (779)
T ss_pred ccccceEEEcCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHh-----------hcCCCCEEEEcCCCCCCCHHHHHHHH
Confidence 4568999999999999999999999999999999999999988 45679999999999999999999999
Q ss_pred hccCCCCC-CcEEEEeCCCcHHHHHHHHHcCCceEEeCCCCHHHHHHHHHHHhh
Q 026776 107 KDSSALRE-IPVVIMSSENILARIDRCLEDGAEDFIVKPVKLSDVKRIKDYLTR 159 (233)
Q Consensus 107 r~~~~~~~-~piIvlt~~~~~~~~~~al~~Ga~dyL~KP~~~~eL~~~~~~l~~ 159 (233)
|+...... .|+|+++++... ....+++.|+++||.||++.++|...+..+..
T Consensus 592 r~~~~~~~~~~ii~~ta~~~~-~~~~~~~~G~~~~l~KP~~~~~L~~~l~~~~~ 644 (779)
T PRK11091 592 RERYPREDLPPLVALTANVLK-DKKEYLDAGMDDVLSKPLSVPALTAMIKKFWD 644 (779)
T ss_pred HhccccCCCCcEEEEECCchH-hHHHHHHCCCCEEEECCCCHHHHHHHHHHHhc
Confidence 98754335 488989887654 46789999999999999999999887766543
No 45
>PRK09483 response regulator; Provisional
Probab=99.64 E-value=1e-14 Score=118.65 Aligned_cols=117 Identities=23% Similarity=0.357 Sum_probs=104.1
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhc-CCEEE-EECCHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCCCCCHHHHHHHHh
Q 026776 30 VHVLAVDDSFVDRKVIERLLTIS-SCKVT-AVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKKIK 107 (233)
Q Consensus 30 ~~ILIVddd~~~~~~l~~~L~~~-g~~v~-~a~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp~~~g~~ll~~Lr 107 (233)
++|||+||++..+..+..+|+.. ++.+. .+.++.+++..+ ....||+||+|+.+++.+|+++++.++
T Consensus 2 ~~ilivd~~~~~~~~l~~~L~~~~~~~~v~~~~~~~~~~~~~-----------~~~~~dlvi~d~~~~~~~g~~~~~~l~ 70 (217)
T PRK09483 2 INVLLVDDHELVRAGIRRILEDIKGIKVVGEACCGEDAVKWC-----------RTNAVDVVLMDMNMPGIGGLEATRKIL 70 (217)
T ss_pred eEEEEECCcHHHHHHHHHHHccCCCCEEEEEeCCHHHHHHHH-----------HhcCCCEEEEeCCCCCCCHHHHHHHHH
Confidence 68999999999999999999874 78775 689999999887 456799999999999999999999998
Q ss_pred ccCCCCCCcEEEEeCCCcHHHHHHHHHcCCceEEeCCCCHHHHHHHHHHHhh
Q 026776 108 DSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVKLSDVKRIKDYLTR 159 (233)
Q Consensus 108 ~~~~~~~~piIvlt~~~~~~~~~~al~~Ga~dyL~KP~~~~eL~~~~~~l~~ 159 (233)
+..+ .+++|+++...+......++..|+++|+.||++.++|...+..+.+
T Consensus 71 ~~~~--~~~ii~ls~~~~~~~~~~~~~~g~~~~l~k~~~~~~l~~~i~~~~~ 120 (217)
T PRK09483 71 RYTP--DVKIIMLTVHTENPLPAKVMQAGAAGYLSKGAAPQEVVSAIRSVHS 120 (217)
T ss_pred HHCC--CCeEEEEeCCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHC
Confidence 7654 7899999999888888999999999999999999999877776654
No 46
>PRK15115 response regulator GlrR; Provisional
Probab=99.64 E-value=6.7e-15 Score=133.34 Aligned_cols=119 Identities=29% Similarity=0.424 Sum_probs=107.7
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHhhcCCEEEEECCHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCCCCCHHHHHHHHh
Q 026776 28 EEVHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKKIK 107 (233)
Q Consensus 28 ~~~~ILIVddd~~~~~~l~~~L~~~g~~v~~a~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp~~~g~~ll~~Lr 107 (233)
...+||||||++..+..+...|+..||.+..+.++.+++..+ ....||+||+|+.||+++|+++++.++
T Consensus 4 ~~~~vLiVdd~~~~~~~l~~~L~~~g~~v~~~~~~~eal~~l-----------~~~~~dlvilD~~lp~~~g~~ll~~l~ 72 (444)
T PRK15115 4 KPAHLLLVDDDPGLLKLLGMRLTSEGYSVVTAESGQEALRVL-----------NREKVDLVISDLRMDEMDGMQLFAEIQ 72 (444)
T ss_pred CCCeEEEEECCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHH-----------hcCCCCEEEEcCCCCCCCHHHHHHHHH
Confidence 458899999999999999999999999999999999999988 456799999999999999999999999
Q ss_pred ccCCCCCCcEEEEeCCCcHHHHHHHHHcCCceEEeCCCCHHHHHHHHHHHhh
Q 026776 108 DSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVKLSDVKRIKDYLTR 159 (233)
Q Consensus 108 ~~~~~~~~piIvlt~~~~~~~~~~al~~Ga~dyL~KP~~~~eL~~~~~~l~~ 159 (233)
...+ .+|+|++++..+.....++++.|+++|+.||++.++|...+..+.+
T Consensus 73 ~~~~--~~pvIvlt~~~~~~~~~~a~~~Ga~~~l~KP~~~~~L~~~l~~~~~ 122 (444)
T PRK15115 73 KVQP--GMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDRDALYKAIDDALE 122 (444)
T ss_pred hcCC--CCcEEEEECCCCHHHHHHHHhcChhhhccCCCCHHHHHHHHHHHHH
Confidence 7654 8899999999988889999999999999999999998776665543
No 47
>PRK14084 two-component response regulator; Provisional
Probab=99.64 E-value=1e-14 Score=121.70 Aligned_cols=115 Identities=20% Similarity=0.298 Sum_probs=98.2
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhcC-C-EEEEECCHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCCCCCHHHHHHHHh
Q 026776 30 VHVLAVDDSFVDRKVIERLLTISS-C-KVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKKIK 107 (233)
Q Consensus 30 ~~ILIVddd~~~~~~l~~~L~~~g-~-~v~~a~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp~~~g~~ll~~Lr 107 (233)
++||||||++..+..+...|...+ + .+..+.++.+++..+ ....||++++|+.||+++|+++++.|+
T Consensus 1 ~~ilivdd~~~~~~~l~~~l~~~~~~~~v~~~~~~~~~l~~~-----------~~~~~dlv~lDi~m~~~~G~~~~~~i~ 69 (246)
T PRK14084 1 MKALIVDDEPLARNELTYLLNEIGGFEEINEAENVKETLEAL-----------LINQYDIIFLDINLMDESGIELAAKIQ 69 (246)
T ss_pred CEEEEECCCHHHHHHHHHHHHhCCCceEEEEECCHHHHHHHH-----------HhcCCCEEEEeCCCCCCCHHHHHHHHH
Confidence 579999999999999999998765 4 567799999999887 345799999999999999999999999
Q ss_pred ccCCCCCCcEEEEeCCCcHHHHHHHHHcCCceEEeCCCCHHHHHHHHHHHhh
Q 026776 108 DSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVKLSDVKRIKDYLTR 159 (233)
Q Consensus 108 ~~~~~~~~piIvlt~~~~~~~~~~al~~Ga~dyL~KP~~~~eL~~~~~~l~~ 159 (233)
+... ..++|++|++. ....++++.|+++|+.||++.++|...+..+.+
T Consensus 70 ~~~~--~~~iI~~t~~~--~~~~~~~~~~~~~yl~KP~~~~~l~~~l~~~~~ 117 (246)
T PRK14084 70 KMKE--PPAIIFATAHD--QFAVKAFELNATDYILKPFEQKRIEQAVNKVRA 117 (246)
T ss_pred hcCC--CCEEEEEecCh--HHHHHHHhcCCcEEEECCCCHHHHHHHHHHHHH
Confidence 8654 66788888765 356789999999999999999999887776654
No 48
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=99.64 E-value=7.7e-15 Score=133.32 Aligned_cols=118 Identities=24% Similarity=0.443 Sum_probs=106.4
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHhhcCCEEEEECCHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCCCCCHHHHHHHHh
Q 026776 28 EEVHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKKIK 107 (233)
Q Consensus 28 ~~~~ILIVddd~~~~~~l~~~L~~~g~~v~~a~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp~~~g~~ll~~Lr 107 (233)
...+||||||++..+..+...|...||.+..+.++.+++..+ ....||+||+|+.||+++|+++++.++
T Consensus 3 ~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l-----------~~~~~dlillD~~~p~~~g~~ll~~i~ 71 (457)
T PRK11361 3 AINRILIVDDEDNVRRMLSTAFALQGFETHCANNGRTALHLF-----------ADIHPDVVLMDIRMPEMDGIKALKEMR 71 (457)
T ss_pred CCCeEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHH-----------hcCCCCEEEEeCCCCCCCHHHHHHHHH
Confidence 356899999999999999999999999999999999999988 456799999999999999999999999
Q ss_pred ccCCCCCCcEEEEeCCCcHHHHHHHHHcCCceEEeCCCCHHHHHHHHHHHh
Q 026776 108 DSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVKLSDVKRIKDYLT 158 (233)
Q Consensus 108 ~~~~~~~~piIvlt~~~~~~~~~~al~~Ga~dyL~KP~~~~eL~~~~~~l~ 158 (233)
...+ .+|+|++|++.+......+++.|+++|+.||++.++|...+..+.
T Consensus 72 ~~~~--~~pvI~lt~~~~~~~~~~a~~~Ga~d~l~KP~~~~~L~~~i~~~l 120 (457)
T PRK11361 72 SHET--RTPVILMTAYAEVETAVEALRCGAFDYVIKPFDLDELNLIVQRAL 120 (457)
T ss_pred hcCC--CCCEEEEeCCCCHHHHHHHHHCCccEEEecccCHHHHHHHHhhhc
Confidence 7654 899999999999999999999999999999999999876665543
No 49
>PRK09581 pleD response regulator PleD; Reviewed
Probab=99.63 E-value=3.1e-15 Score=134.60 Aligned_cols=118 Identities=20% Similarity=0.336 Sum_probs=104.1
Q ss_pred CCCcEEEEEeCCHHHHHHHHHHHhhcCCEEEEECCHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCCCCCHHHHHHHH
Q 026776 27 TEEVHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKKI 106 (233)
Q Consensus 27 ~~~~~ILIVddd~~~~~~l~~~L~~~g~~v~~a~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp~~~g~~ll~~L 106 (233)
....+||+|||++..+..+..+|.. .+.+..+.++.+++..+ ....||+||+|+.||+++|+++++.+
T Consensus 153 ~~~~~vlivdd~~~~~~~l~~~l~~-~~~~~~~~~~~~a~~~~-----------~~~~~d~vi~d~~~p~~~g~~l~~~i 220 (457)
T PRK09581 153 DEDGRILLVDDDVSQAERIANILKE-EFRVVVVSDPSEALFNA-----------AETNYDLVIVSANFENYDPLRLCSQL 220 (457)
T ss_pred ccCceEEEEecccchHHHHHHHHhh-cceeeeecChHHHHHhc-----------ccCCCCEEEecCCCCCchHhHHHHHH
Confidence 3467899999999999999999954 57777899999999887 56789999999999999999999999
Q ss_pred hccCCCCCCcEEEEeCCCcHHHHHHHHHcCCceEEeCCCCHHHHHHHHHH
Q 026776 107 KDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVKLSDVKRIKDY 156 (233)
Q Consensus 107 r~~~~~~~~piIvlt~~~~~~~~~~al~~Ga~dyL~KP~~~~eL~~~~~~ 156 (233)
++......+|+|++|++.+.+...++++.|++||+.||++.++|...+..
T Consensus 221 ~~~~~~~~~~ii~ls~~~~~~~~~~a~~~Ga~d~l~kp~~~~~l~~~i~~ 270 (457)
T PRK09581 221 RSKERTRYVPILLLVDEDDDPRLVKALELGVNDYLMRPIDKNELLARVRT 270 (457)
T ss_pred HhccccCCCcEEEEeCCCChHHHHHHHHccchhhhhCCCcHHHHHHHHHH
Confidence 97654458999999999999999999999999999999999998655443
No 50
>PRK10365 transcriptional regulatory protein ZraR; Provisional
Probab=99.63 E-value=6e-15 Score=133.37 Aligned_cols=118 Identities=28% Similarity=0.468 Sum_probs=106.6
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHhhcCCEEEEECCHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCCCCCHHHHHHHHh
Q 026776 28 EEVHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKKIK 107 (233)
Q Consensus 28 ~~~~ILIVddd~~~~~~l~~~L~~~g~~v~~a~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp~~~g~~ll~~Lr 107 (233)
..++||||||++..+..+...|...|+.+..+.++.+++..+ ....||+||+|+.||+++|+++++.++
T Consensus 4 ~~~~Ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l-----------~~~~~DlvilD~~m~~~~G~~~~~~ir 72 (441)
T PRK10365 4 DNIDILVVDDDISHCTILQALLRGWGYNVALANSGRQALEQV-----------REQVFDLVLCDVRMAEMDGIATLKEIK 72 (441)
T ss_pred CcceEEEEECCHHHHHHHHHHHHHCCCeEEEeCCHHHHHHHH-----------hcCCCCEEEEeCCCCCCCHHHHHHHHH
Confidence 458999999999999999999999999999999999999987 455799999999999999999999999
Q ss_pred ccCCCCCCcEEEEeCCCcHHHHHHHHHcCCceEEeCCCCHHHHHHHHHHHh
Q 026776 108 DSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVKLSDVKRIKDYLT 158 (233)
Q Consensus 108 ~~~~~~~~piIvlt~~~~~~~~~~al~~Ga~dyL~KP~~~~eL~~~~~~l~ 158 (233)
+..+ .+|+|++|++.+......+++.|+.+|+.||++.++|...+....
T Consensus 73 ~~~~--~~~vi~lt~~~~~~~~~~a~~~ga~~~l~Kp~~~~~L~~~l~~~l 121 (441)
T PRK10365 73 ALNP--AIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKAL 121 (441)
T ss_pred hhCC--CCeEEEEECCCCHHHHHHHHHhhhHHHhcCCCCHHHHHHHHHHHH
Confidence 8654 889999999988889999999999999999999999876665543
No 51
>PRK09935 transcriptional regulator FimZ; Provisional
Probab=99.63 E-value=1.8e-14 Score=116.22 Aligned_cols=119 Identities=27% Similarity=0.408 Sum_probs=103.8
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHhhc-CCEEE-EECCHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCCCCCHHHHHHH
Q 026776 28 EEVHVLAVDDSFVDRKVIERLLTIS-SCKVT-AVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKK 105 (233)
Q Consensus 28 ~~~~ILIVddd~~~~~~l~~~L~~~-g~~v~-~a~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp~~~g~~ll~~ 105 (233)
+..+|||+||++..+..+...|... ++.+. .+.++.+++..+ ....||+|++|+.+|+.+|+++++.
T Consensus 2 ~~~~iliv~d~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~dlvild~~l~~~~g~~~~~~ 70 (210)
T PRK09935 2 KPASVIIMDTHPIIRMSIEVLLQKNSELQIVLKTDDYRITIDYL-----------RTRPVDLIIMDIDLPGTDGFTFLKR 70 (210)
T ss_pred CcceEEEECCcHHHHHHHHHHHhhCCCceEEEEeCCHHHHHHHH-----------HhcCCCEEEEeCCCCCCCHHHHHHH
Confidence 4678999999999999999999876 57765 678999998877 4567999999999999999999999
Q ss_pred HhccCCCCCCcEEEEeCCCcHHHHHHHHHcCCceEEeCCCCHHHHHHHHHHHhh
Q 026776 106 IKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVKLSDVKRIKDYLTR 159 (233)
Q Consensus 106 Lr~~~~~~~~piIvlt~~~~~~~~~~al~~Ga~dyL~KP~~~~eL~~~~~~l~~ 159 (233)
++...+ .+++|++++..+......+++.|+++|+.||++.++|...+..+.+
T Consensus 71 l~~~~~--~~~ii~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~l~ 122 (210)
T PRK09935 71 IKQIQS--TVKVLFLSSKSECFYAGRAIQAGANGFVSKCNDQNDIFHAVQMILS 122 (210)
T ss_pred HHHhCC--CCcEEEEECCCcHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHc
Confidence 997654 7899999999888888899999999999999999999877766544
No 52
>PRK09959 hybrid sensory histidine kinase in two-component regulatory system with EvgA; Provisional
Probab=99.62 E-value=1.1e-14 Score=146.11 Aligned_cols=119 Identities=26% Similarity=0.434 Sum_probs=108.6
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHhhcCCEEEEECCHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCCCCCHHHHHHHHh
Q 026776 28 EEVHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKKIK 107 (233)
Q Consensus 28 ~~~~ILIVddd~~~~~~l~~~L~~~g~~v~~a~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp~~~g~~ll~~Lr 107 (233)
..++||||||++..+..+..+|+..|+++..+.++.++++.+ ....||+||+|+.||+++|+++++.|+
T Consensus 957 ~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~-----------~~~~~dlil~D~~mp~~~g~~~~~~i~ 1025 (1197)
T PRK09959 957 EKLSILIADDHPTNRLLLKRQLNLLGYDVDEATDGVQALHKV-----------SMQHYDLLITDVNMPNMDGFELTRKLR 1025 (1197)
T ss_pred cCceEEEcCCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHh-----------hcCCCCEEEEeCCCCCCCHHHHHHHHH
Confidence 457899999999999999999999999999999999999988 566799999999999999999999999
Q ss_pred ccCCCCCCcEEEEeCCCcHHHHHHHHHcCCceEEeCCCCHHHHHHHHHHHhh
Q 026776 108 DSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVKLSDVKRIKDYLTR 159 (233)
Q Consensus 108 ~~~~~~~~piIvlt~~~~~~~~~~al~~Ga~dyL~KP~~~~eL~~~~~~l~~ 159 (233)
+..+ .+|+|++|+..+.....++++.|+++||.||++.++|...++.+..
T Consensus 1026 ~~~~--~~pii~lt~~~~~~~~~~~~~~G~~~~l~KP~~~~~L~~~l~~~~~ 1075 (1197)
T PRK09959 1026 EQNS--SLPIWGLTANAQANEREKGLSCGMNLCLFKPLTLDVLKTHLSQLHQ 1075 (1197)
T ss_pred hcCC--CCCEEEEECCCCHHHHHHHHHCCCCEEEeCCCCHHHHHHHHHHHhh
Confidence 8654 7899999999999999999999999999999999999877765543
No 53
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=99.60 E-value=1.3e-14 Score=131.45 Aligned_cols=112 Identities=18% Similarity=0.277 Sum_probs=100.4
Q ss_pred EEEEeCCHHHHHHHHHHHhhcCCEEEEECCHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCCC-----CCHHHHHHHH
Q 026776 32 VLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPG-----MTGYELLKKI 106 (233)
Q Consensus 32 ILIVddd~~~~~~l~~~L~~~g~~v~~a~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp~-----~~g~~ll~~L 106 (233)
||||||++..+..+...+ .||++..+.++.++++.+ ....||+||+|+.||+ ++|+++++.+
T Consensus 1 ILivddd~~~~~~l~~~l--~~~~v~~a~~~~~al~~l-----------~~~~~dlvllD~~mp~~~~~~~~g~~~l~~i 67 (445)
T TIGR02915 1 LLIVEDDLGLQKQLKWSF--ADYELAVAADRESAIALV-----------RRHEPAVVTLDLGLPPDADGASEGLAALQQI 67 (445)
T ss_pred CEEEECCHHHHHHHHHHh--CCCeEEEeCCHHHHHHHH-----------hhCCCCEEEEeCCCCCCcCCCCCHHHHHHHH
Confidence 689999999999999888 789999999999999998 4557999999999996 8999999999
Q ss_pred hccCCCCCCcEEEEeCCCcHHHHHHHHHcCCceEEeCCCCHHHHHHHHHHHh
Q 026776 107 KDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVKLSDVKRIKDYLT 158 (233)
Q Consensus 107 r~~~~~~~~piIvlt~~~~~~~~~~al~~Ga~dyL~KP~~~~eL~~~~~~l~ 158 (233)
++..+ .+|||++|+..+.+...++++.|+++||.||++.++|...++.+.
T Consensus 68 ~~~~~--~~piI~lt~~~~~~~~~~a~~~Ga~dyl~KP~~~~~L~~~i~~~~ 117 (445)
T TIGR02915 68 LAIAP--DTKVIVITGNDDRENAVKAIGLGAYDFYQKPIDPDVLKLIVDRAF 117 (445)
T ss_pred HhhCC--CCCEEEEecCCCHHHHHHHHHCCccEEEeCCCCHHHHHHHHhhhh
Confidence 88655 899999999999999999999999999999999999876665443
No 54
>PRK10710 DNA-binding transcriptional regulator BaeR; Provisional
Probab=99.60 E-value=9.3e-14 Score=114.53 Aligned_cols=117 Identities=26% Similarity=0.373 Sum_probs=103.8
Q ss_pred CcEEEEEeCCHHHHHHHHHHHhhcCCEEEEECCHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCCCCCHHHHHHHHhc
Q 026776 29 EVHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKKIKD 108 (233)
Q Consensus 29 ~~~ILIVddd~~~~~~l~~~L~~~g~~v~~a~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp~~~g~~ll~~Lr~ 108 (233)
..+||++||+...+..+...|...|+.+..+.++.+++..+ ....||+|++|+.+++.+|+++++.++.
T Consensus 10 ~~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~-----------~~~~~dlvl~d~~~~~~~g~~~~~~l~~ 78 (240)
T PRK10710 10 TPRILIVEDEPKLGQLLIDYLQAASYATTLLSHGDEVLPYV-----------RQTPPDLILLDLMLPGTDGLTLCREIRR 78 (240)
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHH-----------hhCCCCEEEEeCCCCCCCHHHHHHHHHh
Confidence 34899999999999999999999999999999999999887 4557999999999999999999999996
Q ss_pred cCCCCCCcEEEEeCCCcHHHHHHHHHcCCceEEeCCCCHHHHHHHHHHHhh
Q 026776 109 SSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVKLSDVKRIKDYLTR 159 (233)
Q Consensus 109 ~~~~~~~piIvlt~~~~~~~~~~al~~Ga~dyL~KP~~~~eL~~~~~~l~~ 159 (233)
. ..+|+|+++..........+++.|+++|+.||++.++|...+..+.+
T Consensus 79 ~---~~~pii~l~~~~~~~~~~~~~~~ga~~~l~kp~~~~~L~~~i~~~~~ 126 (240)
T PRK10710 79 F---SDIPIVMVTAKIEEIDRLLGLEIGADDYICKPYSPREVVARVKTILR 126 (240)
T ss_pred c---CCCCEEEEEcCCCHHHHHHHHhcCCCeEEECCCCHHHHHHHHHHHHh
Confidence 3 27899999998888888899999999999999999998766655544
No 55
>PRK15479 transcriptional regulatory protein TctD; Provisional
Probab=99.60 E-value=6.2e-14 Score=113.90 Aligned_cols=117 Identities=26% Similarity=0.421 Sum_probs=104.1
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhcCCEEEEECCHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCCCCCHHHHHHHHhcc
Q 026776 30 VHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKKIKDS 109 (233)
Q Consensus 30 ~~ILIVddd~~~~~~l~~~L~~~g~~v~~a~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp~~~g~~ll~~Lr~~ 109 (233)
++||++||++.....+...|...|+.+..+.++.+++..+ ....||+|++|+.+++.+|+++++.++..
T Consensus 1 ~~ilivd~~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~-----------~~~~~d~vild~~~~~~~~~~~~~~i~~~ 69 (221)
T PRK15479 1 MRLLLAEDNRELAHWLEKALVQNGFAVDCVFDGLAADHLL-----------QSEMYALAVLDINMPGMDGLEVLQRLRKR 69 (221)
T ss_pred CeEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHH-----------hhCCCCEEEEeCCCCCCcHHHHHHHHHhc
Confidence 4799999999999999999998999999999999998876 44579999999999999999999999976
Q ss_pred CCCCCCcEEEEeCCCcHHHHHHHHHcCCceEEeCCCCHHHHHHHHHHHhh
Q 026776 110 SALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVKLSDVKRIKDYLTR 159 (233)
Q Consensus 110 ~~~~~~piIvlt~~~~~~~~~~al~~Ga~dyL~KP~~~~eL~~~~~~l~~ 159 (233)
.. .+|+|+++...+.....++++.|+++|+.||++..++...+..+.+
T Consensus 70 ~~--~~~ii~lt~~~~~~~~~~~~~~g~~~~i~kp~~~~~l~~~i~~~~~ 117 (221)
T PRK15479 70 GQ--TLPVLLLTARSAVADRVKGLNVGADDYLPKPFELEELDARLRALLR 117 (221)
T ss_pred CC--CCCEEEEECCCCHHHHHHHHHcCCCeeEeCCCCHHHHHHHHHHHHh
Confidence 54 7899999999888888899999999999999999998776665444
No 56
>PRK10360 DNA-binding transcriptional activator UhpA; Provisional
Probab=99.60 E-value=5.8e-14 Score=112.36 Aligned_cols=114 Identities=26% Similarity=0.443 Sum_probs=99.7
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhc-CCE-EEEECCHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCCCCCHHHHHHHHh
Q 026776 30 VHVLAVDDSFVDRKVIERLLTIS-SCK-VTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKKIK 107 (233)
Q Consensus 30 ~~ILIVddd~~~~~~l~~~L~~~-g~~-v~~a~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp~~~g~~ll~~Lr 107 (233)
++||||||++..+..+...|... ++. +..+.++.+++..+ ....||+||+|+.+++.+|+++++.++
T Consensus 2 ~~ilivd~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~l~~~-----------~~~~~dlvi~d~~~~~~~g~~~~~~l~ 70 (196)
T PRK10360 2 ITVALIDDHLIVRSGFAQLLGLEPDLQVVAEFGSGREALAGL-----------PGRGVQVCICDISMPDISGLELLSQLP 70 (196)
T ss_pred eEEEEECCcHHHHHHHHHHHccCCCcEEEEEECCHHHHHHHH-----------hcCCCCEEEEeCCCCCCCHHHHHHHHc
Confidence 58999999999999999999754 554 56789999999987 456799999999999999999999986
Q ss_pred ccCCCCCCcEEEEeCCCcHHHHHHHHHcCCceEEeCCCCHHHHHHHHHHHhh
Q 026776 108 DSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVKLSDVKRIKDYLTR 159 (233)
Q Consensus 108 ~~~~~~~~piIvlt~~~~~~~~~~al~~Ga~dyL~KP~~~~eL~~~~~~l~~ 159 (233)
. ..|+|+++...+......+++.|+++|+.||++.++|...++.+.+
T Consensus 71 ~-----~~~vi~~s~~~~~~~~~~~~~~ga~~~i~kp~~~~~l~~~i~~~~~ 117 (196)
T PRK10360 71 K-----GMATIMLSVHDSPALVEQALNAGARGFLSKRCSPDELIAAVHTVAT 117 (196)
T ss_pred c-----CCCEEEEECCCCHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHc
Confidence 3 5789999999888888999999999999999999999877776654
No 57
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=99.59 E-value=3.2e-14 Score=129.55 Aligned_cols=114 Identities=29% Similarity=0.442 Sum_probs=103.2
Q ss_pred EEEEeCCHHHHHHHHHHHhhcCCEEEEECCHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCCCCCHHHHHHHHhccCC
Q 026776 32 VLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKKIKDSSA 111 (233)
Q Consensus 32 ILIVddd~~~~~~l~~~L~~~g~~v~~a~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp~~~g~~ll~~Lr~~~~ 111 (233)
||||||++..+..+...|...|+.+..+.++.+++..+ ....||+||+|+.||+++|+++++.++...+
T Consensus 1 ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~-----------~~~~~DlVllD~~~p~~~g~~ll~~l~~~~~ 69 (463)
T TIGR01818 1 VWVVDDDRSIRWVLEKALSRAGYEVRTFGNAASVLRAL-----------ARGQPDLLITDVRMPGEDGLDLLPQIKKRHP 69 (463)
T ss_pred CEEEECCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHH-----------hcCCCCEEEEcCCCCCCCHHHHHHHHHHhCC
Confidence 68999999999999999999999999999999999987 4557999999999999999999999998654
Q ss_pred CCCCcEEEEeCCCcHHHHHHHHHcCCceEEeCCCCHHHHHHHHHHHh
Q 026776 112 LREIPVVIMSSENILARIDRCLEDGAEDFIVKPVKLSDVKRIKDYLT 158 (233)
Q Consensus 112 ~~~~piIvlt~~~~~~~~~~al~~Ga~dyL~KP~~~~eL~~~~~~l~ 158 (233)
.+|+|+++++.+.....++++.|+++|+.||++.++|...+..+.
T Consensus 70 --~~~vIvlt~~~~~~~~~~a~~~Ga~~~l~KP~~~~~L~~~i~~~l 114 (463)
T TIGR01818 70 --QLPVIVMTAHSDLDTAVAAYQRGAFEYLPKPFDLDEAVTLVERAL 114 (463)
T ss_pred --CCeEEEEeCCCCHHHHHHHHHcCcceeecCCCCHHHHHHHHHHHH
Confidence 789999999998888999999999999999999999877665543
No 58
>PRK11697 putative two-component response-regulatory protein YehT; Provisional
Probab=99.59 E-value=5e-14 Score=116.77 Aligned_cols=114 Identities=23% Similarity=0.364 Sum_probs=95.1
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhcC-CE-EEEECCHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCCCCCHHHHHHHHh
Q 026776 30 VHVLAVDDSFVDRKVIERLLTISS-CK-VTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKKIK 107 (233)
Q Consensus 30 ~~ILIVddd~~~~~~l~~~L~~~g-~~-v~~a~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp~~~g~~ll~~Lr 107 (233)
++|+||||++..+..+...|+..+ +. +..+.++.+++..+ ....||++|+|+.||+++|+++++.++
T Consensus 2 ~~IlIvdd~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~-----------~~~~~dlv~lDi~~~~~~G~~~~~~l~ 70 (238)
T PRK11697 2 IKVLIVDDEPLAREELRELLQEEGDIEIVGECSNAIEAIGAI-----------HRLKPDVVFLDIQMPRISGLELVGMLD 70 (238)
T ss_pred cEEEEECCCHHHHHHHHHHHhhCCCcEEEEEeCCHHHHHHHH-----------HhcCCCEEEEeCCCCCCCHHHHHHHhc
Confidence 689999999999999999998877 33 45688999999887 345799999999999999999999996
Q ss_pred ccCCCCCCcEEEEeCCCcHHHHHHHHHcCCceEEeCCCCHHHHHHHHHHHhh
Q 026776 108 DSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVKLSDVKRIKDYLTR 159 (233)
Q Consensus 108 ~~~~~~~~piIvlt~~~~~~~~~~al~~Ga~dyL~KP~~~~eL~~~~~~l~~ 159 (233)
.. . ..++|++|++. +...++++.|+.+|+.||++.++|...+..+.+
T Consensus 71 ~~-~--~~~ii~vt~~~--~~~~~a~~~~~~~yl~KP~~~~~l~~~l~~~~~ 117 (238)
T PRK11697 71 PE-H--MPYIVFVTAFD--EYAIKAFEEHAFDYLLKPIDPARLAKTLARLRQ 117 (238)
T ss_pred cc-C--CCEEEEEeccH--HHHHHHHhcCCcEEEECCCCHHHHHHHHHHHHH
Confidence 42 1 44677777765 456789999999999999999999877776654
No 59
>PRK10610 chemotaxis regulatory protein CheY; Provisional
Probab=99.58 E-value=3.1e-13 Score=98.76 Aligned_cols=121 Identities=28% Similarity=0.471 Sum_probs=104.5
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHhhcCC-EEEEECCHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCCCCCHHHHHHHH
Q 026776 28 EEVHVLAVDDSFVDRKVIERLLTISSC-KVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKKI 106 (233)
Q Consensus 28 ~~~~ILIVddd~~~~~~l~~~L~~~g~-~v~~a~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp~~~g~~ll~~L 106 (233)
+.++|++++++......+...|...|+ .+..+.++.+++..+ ....+|++++|..+++.+|+++++.+
T Consensus 4 ~~~~il~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~-----------~~~~~di~l~d~~~~~~~~~~~~~~l 72 (129)
T PRK10610 4 KELKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKL-----------QAGGFGFVISDWNMPNMDGLELLKTI 72 (129)
T ss_pred ccceEEEEcCCHHHHHHHHHHHHHcCCCeEEEeCCHHHHHHHh-----------hccCCCEEEEcCCCCCCCHHHHHHHH
Confidence 458999999999999999999998888 477888999998877 45579999999999999999999999
Q ss_pred hccCCCCCCcEEEEeCCCcHHHHHHHHHcCCceEEeCCCCHHHHHHHHHHHhh
Q 026776 107 KDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVKLSDVKRIKDYLTR 159 (233)
Q Consensus 107 r~~~~~~~~piIvlt~~~~~~~~~~al~~Ga~dyL~KP~~~~eL~~~~~~l~~ 159 (233)
+.......+++++++..........+++.|+++|+.||++..++...+..+.+
T Consensus 73 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~g~~~~i~~p~~~~~l~~~l~~~~~ 125 (129)
T PRK10610 73 RADGAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKIFE 125 (129)
T ss_pred HhCCCcCCCcEEEEECCCCHHHHHHHHHhCCCeEEECCCCHHHHHHHHHHHHH
Confidence 98654447899999988888888899999999999999999998766655443
No 60
>PRK09390 fixJ response regulator FixJ; Provisional
Probab=99.58 E-value=8.5e-14 Score=110.82 Aligned_cols=118 Identities=28% Similarity=0.415 Sum_probs=104.7
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHhhcCCEEEEECCHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCCCCCHHHHHHHHh
Q 026776 28 EEVHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKKIK 107 (233)
Q Consensus 28 ~~~~ILIVddd~~~~~~l~~~L~~~g~~v~~a~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp~~~g~~ll~~Lr 107 (233)
.+.+||++||++..+..+...|...|+.+..+.++.+++..+ ....||+|++|+.+++++|+++++.++
T Consensus 2 ~~~~iliv~~~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~-----------~~~~~d~ii~d~~~~~~~~~~~~~~l~ 70 (202)
T PRK09390 2 DKGVVHVVDDDEAMRDSLAFLLDSAGFEVRLFESAQAFLDAL-----------PGLRFGCVVTDVRMPGIDGIELLRRLK 70 (202)
T ss_pred CCCEEEEEeCCHHHHHHHHHHHHHCCCeEEEeCCHHHHHHHh-----------ccCCCCEEEEeCCCCCCcHHHHHHHHH
Confidence 357899999999999999999998999999999999998887 456799999999999999999999999
Q ss_pred ccCCCCCCcEEEEeCCCcHHHHHHHHHcCCceEEeCCCCHHHHHHHHHHHh
Q 026776 108 DSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVKLSDVKRIKDYLT 158 (233)
Q Consensus 108 ~~~~~~~~piIvlt~~~~~~~~~~al~~Ga~dyL~KP~~~~eL~~~~~~l~ 158 (233)
...+ .+|+|+++...+......+++.|+++|+.||+...++...+..+.
T Consensus 71 ~~~~--~~~ii~l~~~~~~~~~~~~~~~g~~~~l~~p~~~~~l~~~l~~~~ 119 (202)
T PRK09390 71 ARGS--PLPVIVMTGHGDVPLAVEAMKLGAVDFIEKPFEDERLIGAIERAL 119 (202)
T ss_pred hcCC--CCCEEEEECCCCHHHHHHHHHcChHHHhhCCCCHHHHHHHHHHHH
Confidence 7654 889999999988888899999999999999999988866555443
No 61
>PRK12555 chemotaxis-specific methylesterase; Provisional
Probab=99.57 E-value=7.1e-14 Score=122.50 Aligned_cols=102 Identities=25% Similarity=0.353 Sum_probs=88.9
Q ss_pred cEEEEEeCCHHHHHHHHHHH-hhcCCEEE-EECCHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCCCCCHHHHHHHHh
Q 026776 30 VHVLAVDDSFVDRKVIERLL-TISSCKVT-AVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKKIK 107 (233)
Q Consensus 30 ~~ILIVddd~~~~~~l~~~L-~~~g~~v~-~a~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp~~~g~~ll~~Lr 107 (233)
++||||||++..+..+..+| +..++.+. .+.++.++++.+ ....||+|++|+.||+++|++++++|+
T Consensus 1 ~~VLvVdd~~~~~~~l~~~L~~~~~~~vv~~a~~~~eal~~l-----------~~~~pDlVllD~~mp~~~G~e~l~~l~ 69 (337)
T PRK12555 1 MRIGIVNDSPLAVEALRRALARDPDHEVVWVATDGAQAVERC-----------AAQPPDVILMDLEMPRMDGVEATRRIM 69 (337)
T ss_pred CEEEEEeCCHHHHHHHHHHHhhCCCCEEEEEECCHHHHHHHH-----------hccCCCEEEEcCCCCCCCHHHHHHHHH
Confidence 57999999999999999999 45678776 689999999988 456799999999999999999999998
Q ss_pred ccCCCCCCcEEEEeCCCc--HHHHHHHHHcCCceEEeCCC
Q 026776 108 DSSALREIPVVIMSSENI--LARIDRCLEDGAEDFIVKPV 145 (233)
Q Consensus 108 ~~~~~~~~piIvlt~~~~--~~~~~~al~~Ga~dyL~KP~ 145 (233)
... .+|+|++++... .....++++.|+++|+.||+
T Consensus 70 ~~~---~~pvivvs~~~~~~~~~~~~al~~Ga~d~l~KP~ 106 (337)
T PRK12555 70 AER---PCPILIVTSLTERNASRVFEAMGAGALDAVDTPT 106 (337)
T ss_pred HHC---CCcEEEEeCCCCcCHHHHHHHHhcCceEEEECCC
Confidence 743 578999987643 45677899999999999999
No 62
>PRK09581 pleD response regulator PleD; Reviewed
Probab=99.57 E-value=1.1e-13 Score=124.53 Aligned_cols=119 Identities=32% Similarity=0.475 Sum_probs=106.7
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhcCCEEEEECCHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCCCCCHHHHHHHHhcc
Q 026776 30 VHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKKIKDS 109 (233)
Q Consensus 30 ~~ILIVddd~~~~~~l~~~L~~~g~~v~~a~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp~~~g~~ll~~Lr~~ 109 (233)
.+||+||+++..+..+...|...|+.+..+.++.+++..+ ....||+|++|+.||+.+|+++++++++.
T Consensus 3 ~~ilii~~~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~-----------~~~~~dlvi~d~~~~~~~g~~l~~~i~~~ 71 (457)
T PRK09581 3 ARILVVDDIPANVKLLEAKLLAEYYTVLTASSGAEAIAIC-----------EREQPDIILLDVMMPGMDGFEVCRRLKSD 71 (457)
T ss_pred CeEEEEeCCHHHHHHHHHHHHhCCCEEEEeCCHHHHHHHH-----------hhcCCCEEEEeCCCCCCCHHHHHHHHHcC
Confidence 4799999999999999999998899999999999999988 45679999999999999999999999986
Q ss_pred CCCCCCcEEEEeCCCcHHHHHHHHHcCCceEEeCCCCHHHHHHHHHHHhh
Q 026776 110 SALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVKLSDVKRIKDYLTR 159 (233)
Q Consensus 110 ~~~~~~piIvlt~~~~~~~~~~al~~Ga~dyL~KP~~~~eL~~~~~~l~~ 159 (233)
.....+|+|++++..+.....++++.|+++|+.||++.++|...+..+.+
T Consensus 72 ~~~~~~~ii~~s~~~~~~~~~~~~~~ga~~~l~kp~~~~~l~~~i~~~~~ 121 (457)
T PRK09581 72 PATTHIPVVMVTALDDPEDRVRGLEAGADDFLTKPINDVALFARVKSLTR 121 (457)
T ss_pred cccCCCCEEEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHH
Confidence 54457899999999998889999999999999999999999766665544
No 63
>PRK10100 DNA-binding transcriptional regulator CsgD; Provisional
Probab=99.56 E-value=1.2e-13 Score=113.85 Aligned_cols=117 Identities=10% Similarity=0.074 Sum_probs=94.9
Q ss_pred CCCCcEEEEEeCCHHHHHHHHHHHhhcCCEEEEECCHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCCCCCHHHHH-H
Q 026776 26 DTEEVHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELL-K 104 (233)
Q Consensus 26 ~~~~~~ILIVddd~~~~~~l~~~L~~~g~~v~~a~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp~~~g~~ll-~ 104 (233)
++...++++|||++.++..++.+|...-..+..+.++.+++..+ . .|||||+|+.||+++|++++ +
T Consensus 7 ~~~~~~~~~v~~~~l~~~~l~~~L~~~~~v~~~~~~~~~~~~~~-----------~--~~DvvllDi~~p~~~G~~~~~~ 73 (216)
T PRK10100 7 SSHGHTLLLITKPSLQATALLQHLKQSLAITGKLHNIQRSLDDI-----------S--SGSIILLDMMEADKKLIHYWQD 73 (216)
T ss_pred cccCceEEEEeChHhhhHHHHHHHHHhCCCeEEEcCHHHhhccC-----------C--CCCEEEEECCCCCccHHHHHHH
Confidence 44567899999999999999999984333455677888888765 2 38999999999999999997 5
Q ss_pred HHhccCCCCCCcEEEEeCCCcHHHHHHHHH--cCCceEEeCCCCHHHHHHHHHHHhh
Q 026776 105 KIKDSSALREIPVVIMSSENILARIDRCLE--DGAEDFIVKPVKLSDVKRIKDYLTR 159 (233)
Q Consensus 105 ~Lr~~~~~~~~piIvlt~~~~~~~~~~al~--~Ga~dyL~KP~~~~eL~~~~~~l~~ 159 (233)
.|+...+ .++||++|...+ ....++. .||.+|+.|..+.++|.+.++.+.+
T Consensus 74 ~i~~~~p--~~~vvvlt~~~~--~~~~~~~~~~Ga~G~l~K~~~~~~L~~aI~~v~~ 126 (216)
T PRK10100 74 TLSRKNN--NIKILLLNTPED--YPYREIENWPHINGVFYAMEDQERVVNGLQGVLR 126 (216)
T ss_pred HHHHhCC--CCcEEEEECCch--hHHHHHHHhcCCeEEEECCCCHHHHHHHHHHHHc
Confidence 6787655 889999999876 3345555 5999999999999999888877654
No 64
>PRK00742 chemotaxis-specific methylesterase; Provisional
Probab=99.55 E-value=2.2e-13 Score=120.16 Aligned_cols=105 Identities=35% Similarity=0.439 Sum_probs=91.3
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHhhc-CCEEE-EECCHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCCCCCHHHHHHH
Q 026776 28 EEVHVLAVDDSFVDRKVIERLLTIS-SCKVT-AVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKK 105 (233)
Q Consensus 28 ~~~~ILIVddd~~~~~~l~~~L~~~-g~~v~-~a~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp~~~g~~ll~~ 105 (233)
.+++||||||+...+..+...|... ++.+. .+.++.+++..+ ....||+|++|+.||+++|+++++.
T Consensus 2 ~~~~ILiVdd~~~~~~~L~~~L~~~~~~~vv~~a~~~~~al~~~-----------~~~~~DlVllD~~mp~~dgle~l~~ 70 (354)
T PRK00742 2 MKIRVLVVDDSAFMRRLISEILNSDPDIEVVGTAPDGLEAREKI-----------KKLNPDVITLDVEMPVMDGLDALEK 70 (354)
T ss_pred CccEEEEECCCHHHHHHHHHHHhhCCCCEEEEEECCHHHHHHHH-----------hhhCCCEEEEeCCCCCCChHHHHHH
Confidence 4689999999999999999999876 78776 789999999987 4567999999999999999999999
Q ss_pred HhccCCCCCCcEEEEeCCC--cHHHHHHHHHcCCceEEeCCCC
Q 026776 106 IKDSSALREIPVVIMSSEN--ILARIDRCLEDGAEDFIVKPVK 146 (233)
Q Consensus 106 Lr~~~~~~~~piIvlt~~~--~~~~~~~al~~Ga~dyL~KP~~ 146 (233)
|++.. .+|+|+++... ......++++.|+++|+.||++
T Consensus 71 i~~~~---~~piIvls~~~~~~~~~~~~al~~Ga~d~l~kP~~ 110 (354)
T PRK00742 71 IMRLR---PTPVVMVSSLTERGAEITLRALELGAVDFVTKPFL 110 (354)
T ss_pred HHHhC---CCCEEEEecCCCCCHHHHHHHHhCCCcEEEeCCcc
Confidence 98764 38999998753 3456778999999999999994
No 65
>PRK13435 response regulator; Provisional
Probab=99.54 E-value=4.1e-13 Score=103.01 Aligned_cols=114 Identities=24% Similarity=0.302 Sum_probs=96.5
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHhhcCCEEE-EECCHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCC-CCCHHHHHHH
Q 026776 28 EEVHVLAVDDSFVDRKVIERLLTISSCKVT-AVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMP-GMTGYELLKK 105 (233)
Q Consensus 28 ~~~~ILIVddd~~~~~~l~~~L~~~g~~v~-~a~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp-~~~g~~ll~~ 105 (233)
..++|||+|++......+...|+..|+.+. .++++.+++..+ ....||+||+|+.++ +.+|+++++.
T Consensus 4 ~~~~iliid~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~-----------~~~~~dliivd~~~~~~~~~~~~~~~ 72 (145)
T PRK13435 4 RQLKVLIVEDEALIALELEKLVEEAGHEVVGIAMSSEQAIALG-----------RRRQPDVALVDVHLADGPTGVEVARR 72 (145)
T ss_pred ccceEEEEcCcHHHHHHHHHHHHhcCCeEEEeeCCHHHHHHHh-----------hhcCCCEEEEeeecCCCCcHHHHHHH
Confidence 468999999999999999999998899876 789999998877 345799999999998 5899999999
Q ss_pred HhccCCCCCCcEEEEeCCCcHHHHHHHHHcCCceEEeCCCCHHHHHHHHHHHh
Q 026776 106 IKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVKLSDVKRIKDYLT 158 (233)
Q Consensus 106 Lr~~~~~~~~piIvlt~~~~~~~~~~al~~Ga~dyL~KP~~~~eL~~~~~~l~ 158 (233)
++.. . .+|+|+++...+ ...++..|+++|+.||++.++|...+..+.
T Consensus 73 l~~~-~--~~pii~ls~~~~---~~~~~~~ga~~~l~kp~~~~~l~~~i~~~~ 119 (145)
T PRK13435 73 LSAD-G--GVEVVFMTGNPE---RVPHDFAGALGVIAKPYSPRGVARALSYLS 119 (145)
T ss_pred HHhC-C--CCCEEEEeCCHH---HHHHHhcCcceeEeCCCCHHHHHHHHHHHH
Confidence 9764 2 789999987643 246778999999999999999987776554
No 66
>PRK10651 transcriptional regulator NarL; Provisional
Probab=99.54 E-value=4.7e-13 Score=108.05 Aligned_cols=121 Identities=25% Similarity=0.453 Sum_probs=104.0
Q ss_pred CCCCcEEEEEeCCHHHHHHHHHHHhhc-CCEE-EEECCHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCCCCCHHHHH
Q 026776 26 DTEEVHVLAVDDSFVDRKVIERLLTIS-SCKV-TAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELL 103 (233)
Q Consensus 26 ~~~~~~ILIVddd~~~~~~l~~~L~~~-g~~v-~~a~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp~~~g~~ll 103 (233)
+.+..+|||||+++..+..+..+|... ++.+ ..+.++.+++..+ ....||+|++|+.+++.+|++++
T Consensus 3 ~~~~~~iliv~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~dlvl~d~~l~~~~~~~~~ 71 (216)
T PRK10651 3 NQEPATILLIDDHPMLRTGVKQLISMAPDITVVGEASNGEQGIELA-----------ESLDPDLILLDLNMPGMNGLETL 71 (216)
T ss_pred CCcceEEEEECCCHHHHHHHHHHHccCCCcEEEEEeCCHHHHHHHH-----------HhCCCCEEEEeCCCCCCcHHHHH
Confidence 456789999999999999999999765 5554 4688999999887 45579999999999999999999
Q ss_pred HHHhccCCCCCCcEEEEeCCCcHHHHHHHHHcCCceEEeCCCCHHHHHHHHHHHhh
Q 026776 104 KKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVKLSDVKRIKDYLTR 159 (233)
Q Consensus 104 ~~Lr~~~~~~~~piIvlt~~~~~~~~~~al~~Ga~dyL~KP~~~~eL~~~~~~l~~ 159 (233)
+.++...+ ..++|+++...+......+++.|+++|+.||++..+|...+..+.+
T Consensus 72 ~~l~~~~~--~~~vi~l~~~~~~~~~~~~~~~g~~~~i~k~~~~~~l~~~i~~~~~ 125 (216)
T PRK10651 72 DKLREKSL--SGRIVVFSVSNHEEDVVTALKRGADGYLLKDMEPEDLLKALQQAAA 125 (216)
T ss_pred HHHHHhCC--CCcEEEEeCCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHC
Confidence 99997654 7899999998888888899999999999999999998777666544
No 67
>PRK13558 bacterio-opsin activator; Provisional
Probab=99.54 E-value=1.4e-13 Score=130.48 Aligned_cols=106 Identities=21% Similarity=0.195 Sum_probs=97.5
Q ss_pred CcEEEEEeCCHHHHHHHHHHHhhcCCEEEEECCHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCCCCCHHHHHHHHhc
Q 026776 29 EVHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKKIKD 108 (233)
Q Consensus 29 ~~~ILIVddd~~~~~~l~~~L~~~g~~v~~a~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp~~~g~~ll~~Lr~ 108 (233)
.++||||||++..+..+..+|...||.+..+.++.+++..+ ....||+||+|+.||+++|+++++.|+.
T Consensus 7 ~~~ILivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~al~~~-----------~~~~~Dlvl~d~~lp~~~g~~~l~~l~~ 75 (665)
T PRK13558 7 TRGVLFVGDDPEAGPVDCDLDEDGRLDVTQIRDFVAARDRV-----------EAGEIDCVVADHEPDGFDGLALLEAVRQ 75 (665)
T ss_pred ceeEEEEccCcchHHHHHHHhhccCcceEeeCCHHHHHHHh-----------hccCCCEEEEeccCCCCcHHHHHHHHHh
Confidence 58999999999999999999988899999999999999987 4567999999999999999999999997
Q ss_pred cCCCCCCcEEEEeCCCcHHHHHHHHHcCCceEEeCCCCH
Q 026776 109 SSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVKL 147 (233)
Q Consensus 109 ~~~~~~~piIvlt~~~~~~~~~~al~~Ga~dyL~KP~~~ 147 (233)
..+ .+|+|++++..+.....++++.|+.+|+.||...
T Consensus 76 ~~~--~~piI~lt~~~~~~~~~~al~~Ga~dyl~k~~~~ 112 (665)
T PRK13558 76 TTA--VPPVVVVPTAGDEAVARRAVDADAAAYVPAVSDD 112 (665)
T ss_pred cCC--CCCEEEEECCCCHHHHHHHHhcCcceEEeccchh
Confidence 655 8999999999999999999999999999999753
No 68
>PRK10403 transcriptional regulator NarP; Provisional
Probab=99.53 E-value=5.9e-13 Score=107.27 Aligned_cols=119 Identities=20% Similarity=0.373 Sum_probs=102.1
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHhh-cCCEEE-EECCHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCCCCCHHHHHHH
Q 026776 28 EEVHVLAVDDSFVDRKVIERLLTI-SSCKVT-AVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKK 105 (233)
Q Consensus 28 ~~~~ILIVddd~~~~~~l~~~L~~-~g~~v~-~a~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp~~~g~~ll~~ 105 (233)
..++||++|+++..+..+...|.. .++.+. .+.++.+++..+ ....||+||+|+.+++++|+++++.
T Consensus 5 ~~~~ilii~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~dlvi~d~~~~~~~~~~~~~~ 73 (215)
T PRK10403 5 TPFQVLIVDDHPLMRRGVRQLLELDPGFEVVAEAGDGASAIDLA-----------NRLDPDVILLDLNMKGMSGLDTLNA 73 (215)
T ss_pred eeEEEEEEcCCHHHHHHHHHHHhcCCCCEEEEEeCCHHHHHHHH-----------HhcCCCEEEEecCCCCCcHHHHHHH
Confidence 458899999999999999999975 467765 688999998877 4457999999999999999999999
Q ss_pred HhccCCCCCCcEEEEeCCCcHHHHHHHHHcCCceEEeCCCCHHHHHHHHHHHhh
Q 026776 106 IKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVKLSDVKRIKDYLTR 159 (233)
Q Consensus 106 Lr~~~~~~~~piIvlt~~~~~~~~~~al~~Ga~dyL~KP~~~~eL~~~~~~l~~ 159 (233)
+++..+ ..++++++...+......+++.|+++|+.||++..+|...+..+.+
T Consensus 74 l~~~~~--~~~ii~l~~~~~~~~~~~~~~~g~~~~i~kp~~~~~l~~~i~~~~~ 125 (215)
T PRK10403 74 LRRDGV--TAQIIILTVSDASSDVFALIDAGADGYLLKDSDPEVLLEAIRAGAK 125 (215)
T ss_pred HHHhCC--CCeEEEEeCCCChHHHHHHHHcCCCeEEecCCCHHHHHHHHHHHhC
Confidence 998655 6789999988888888899999999999999999998777665543
No 69
>PRK15369 two component system sensor kinase SsrB; Provisional
Probab=99.52 E-value=8.3e-13 Score=105.63 Aligned_cols=119 Identities=19% Similarity=0.315 Sum_probs=102.1
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHhhc-CCEE-EEECCHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCCCCCHHHHHHH
Q 026776 28 EEVHVLAVDDSFVDRKVIERLLTIS-SCKV-TAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKK 105 (233)
Q Consensus 28 ~~~~ILIVddd~~~~~~l~~~L~~~-g~~v-~~a~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp~~~g~~ll~~ 105 (233)
+.++||++|+++..+..+...|... ++.+ ..+.++.+++..+ ....||+|++|+.+++++|+++++.
T Consensus 2 ~~~~iliv~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~dlvl~d~~~~~~~~~~~~~~ 70 (211)
T PRK15369 2 KNYKILLVDDHELIINGIKNMLAPYPRYKIVGQVDNGLEVYNAC-----------RQLEPDIVILDLGLPGMNGLDVIPQ 70 (211)
T ss_pred CccEEEEECCcHHHHHHHHHHHccCCCcEEEEEECCHHHHHHHH-----------HhcCCCEEEEeCCCCCCCHHHHHHH
Confidence 4588999999999999999999875 4654 4688999988876 4557999999999999999999999
Q ss_pred HhccCCCCCCcEEEEeCCCcHHHHHHHHHcCCceEEeCCCCHHHHHHHHHHHhh
Q 026776 106 IKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVKLSDVKRIKDYLTR 159 (233)
Q Consensus 106 Lr~~~~~~~~piIvlt~~~~~~~~~~al~~Ga~dyL~KP~~~~eL~~~~~~l~~ 159 (233)
+++..+ ..++|+++...+......+++.|+++|+.||++..+|...+..+.+
T Consensus 71 l~~~~~--~~~ii~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~~ 122 (211)
T PRK15369 71 LHQRWP--AMNILVLTARQEEHMASRTLAAGALGYVLKKSPQQILLAAIQTVAV 122 (211)
T ss_pred HHHHCC--CCcEEEEeCCCCHHHHHHHHHhCCCEEEeCCCCHHHHHHHHHHHHC
Confidence 998654 7899999999888888899999999999999999998776665543
No 70
>PRK11475 DNA-binding transcriptional activator BglJ; Provisional
Probab=99.52 E-value=3.1e-13 Score=110.67 Aligned_cols=106 Identities=13% Similarity=0.134 Sum_probs=88.4
Q ss_pred HHHHHHHHhh---cCCEEEEECCHHHHHHHhhhhhhhhccCCCCCcccEEE---EcCCCCCCCHHHHHHHHhccCCCCCC
Q 026776 42 RKVIERLLTI---SSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLII---TDYCMPGMTGYELLKKIKDSSALREI 115 (233)
Q Consensus 42 ~~~l~~~L~~---~g~~v~~a~~~~~al~~l~~~~~~~~~~~~~~~~Dlvl---lD~~mp~~~g~~ll~~Lr~~~~~~~~ 115 (233)
+..+..+|.. .|+.+..+.+++++++.+ ....||++| +|+.||+++|++++++|++..+ .+
T Consensus 3 r~gi~~lL~~~~~~~~~v~~~~~~~~~l~~~-----------~~~~pd~vl~dl~d~~mp~~~Gl~~~~~l~~~~p--~~ 69 (207)
T PRK11475 3 SIGIESLFRKFPGNPYKLHTFSSQSSFQDAM-----------SRISFSAVIFSLSAMRSERREGLSCLTELAIKFP--RM 69 (207)
T ss_pred hHHHHHHHhcCCCCeeEEEEeCCHHHHHHHh-----------ccCCCCEEEeeccccCCCCCCHHHHHHHHHHHCC--CC
Confidence 5678888864 356677899999999987 456789998 6889999999999999998765 89
Q ss_pred cEEEEeCCCcHHHHHHHH-HcCCceEEeCCCCHHHHHHHHHHHhhh
Q 026776 116 PVVIMSSENILARIDRCL-EDGAEDFIVKPVKLSDVKRIKDYLTRD 160 (233)
Q Consensus 116 piIvlt~~~~~~~~~~al-~~Ga~dyL~KP~~~~eL~~~~~~l~~~ 160 (233)
+||++|++.+......++ +.|+++|+.|+++.++|...++.+.+.
T Consensus 70 ~iIvlt~~~~~~~~~~~~~~~Ga~gyl~K~~~~~eL~~aI~~v~~G 115 (207)
T PRK11475 70 RRLVIADDDIEARLIGSLSPSPLDGVLSKASTLEILQQELFLSLNG 115 (207)
T ss_pred CEEEEeCCCCHHHHHHHHHHcCCeEEEecCCCHHHHHHHHHHHHCC
Confidence 999999987766566655 799999999999999998887776553
No 71
>COG2201 CheB Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain [Cell motility and secretion / Signal transduction mechanisms]
Probab=99.49 E-value=5.3e-13 Score=115.64 Aligned_cols=104 Identities=39% Similarity=0.501 Sum_probs=92.3
Q ss_pred CcEEEEEeCCHHHHHHHHHHHhhcC--CEEEEECCHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCCCCCHHHHHHHH
Q 026776 29 EVHVLAVDDSFVDRKVIERLLTISS--CKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKKI 106 (233)
Q Consensus 29 ~~~ILIVddd~~~~~~l~~~L~~~g--~~v~~a~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp~~~g~~ll~~L 106 (233)
+++||+|||....|..++++|...+ ..|..+.|+.++++.+ ....||+|.+|+.||.|||+++++.|
T Consensus 1 ~irVlvVddsal~R~~i~~~l~~~~~i~vv~~a~ng~~a~~~~-----------~~~~PDVi~ld~emp~mdgl~~l~~i 69 (350)
T COG2201 1 KIRVLVVDDSALMRKVISDILNSDPDIEVVGTARNGREAIDKV-----------KKLKPDVITLDVEMPVMDGLEALRKI 69 (350)
T ss_pred CcEEEEEcCcHHHHHHHHHHHhcCCCeEEEEecCCHHHHHHHH-----------HhcCCCEEEEecccccccHHHHHHHH
Confidence 4799999999999999999999998 5667799999999999 67889999999999999999999999
Q ss_pred hccCCCCCCcEEEEeCCCc--HHHHHHHHHcCCceEEeCCCC
Q 026776 107 KDSSALREIPVVIMSSENI--LARIDRCLEDGAEDFIVKPVK 146 (233)
Q Consensus 107 r~~~~~~~~piIvlt~~~~--~~~~~~al~~Ga~dyL~KP~~ 146 (233)
-... .+|||++++-.. .+...++++.||.||+.||..
T Consensus 70 m~~~---p~pVimvsslt~~g~~~t~~al~~gAvD~i~kp~~ 108 (350)
T COG2201 70 MRLR---PLPVIMVSSLTEEGAEATLEALELGAVDFIAKPSG 108 (350)
T ss_pred hcCC---CCcEEEEeccccccHHHHHHHHhcCcceeecCCCc
Confidence 8752 789999876532 567789999999999999985
No 72
>PRK15411 rcsA colanic acid capsular biosynthesis activation protein A; Provisional
Probab=99.47 E-value=1.4e-12 Score=106.90 Aligned_cols=116 Identities=9% Similarity=0.081 Sum_probs=94.3
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhcCC---EEEEECCHHHHHHHhhhhhhhhccCCCCCcccEEEEcCC--CCCCCHHHHHH
Q 026776 30 VHVLAVDDSFVDRKVIERLLTISSC---KVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYC--MPGMTGYELLK 104 (233)
Q Consensus 30 ~~ILIVddd~~~~~~l~~~L~~~g~---~v~~a~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~--mp~~~g~~ll~ 104 (233)
+.|+||||++.++..++.+|...++ .+..+.++.+++..+ ....|||||+|+. +++.+|.++++
T Consensus 1 ~~~lIvDD~~~~~~gl~~~L~~~~~~~~vv~~~~~~~~~~~~~-----------~~~~pDlvLlDl~~~l~~~~g~~~i~ 69 (207)
T PRK15411 1 MSTIIMDLCSYTRLGLTGYLLSRGVKKREINDIETVDDLAIAC-----------DSLRPSVVFINEDCFIHDASNSQRIK 69 (207)
T ss_pred CCEEEEcCCHHHHHHHHHHHHhCCCcceEEEecCCHHHHHHHH-----------hccCCCEEEEeCcccCCCCChHHHHH
Confidence 3589999999999999999986552 445789999999887 4557999999966 88889999999
Q ss_pred HHhccCCCCCCcEEEEeCCCcHHHHHHHHHcCCce-EEeCCCCHHHHHHHHHHHhh
Q 026776 105 KIKDSSALREIPVVIMSSENILARIDRCLEDGAED-FIVKPVKLSDVKRIKDYLTR 159 (233)
Q Consensus 105 ~Lr~~~~~~~~piIvlt~~~~~~~~~~al~~Ga~d-yL~KP~~~~eL~~~~~~l~~ 159 (233)
+|+...+ .+++|++|...+.... .++..|+.. |+.|+.+.++|..+++.+..
T Consensus 70 ~i~~~~p--~~~iivlt~~~~~~~~-~~~~~~~~~~~~~K~~~~~~L~~aI~~v~~ 122 (207)
T PRK15411 70 QIINQHP--NTLFIVFMAIANIHFD-EYLLVRKNLLISSKSIKPESLDDLLGDILK 122 (207)
T ss_pred HHHHHCC--CCeEEEEECCCchhHH-HHHHHHhhceeeeccCCHHHHHHHHHHHHc
Confidence 9998766 7899999998766554 355555554 88999999999887776644
No 73
>PRK13837 two-component VirA-like sensor kinase; Provisional
Probab=99.43 E-value=4.4e-12 Score=123.35 Aligned_cols=118 Identities=11% Similarity=0.124 Sum_probs=103.9
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHhhcCCEEEEECCHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCCCCCHHHHHHHHh
Q 026776 28 EEVHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKKIK 107 (233)
Q Consensus 28 ~~~~ILIVddd~~~~~~l~~~L~~~g~~v~~a~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp~~~g~~ll~~Lr 107 (233)
.+.+||||||++..+..+...|...||++..+.++.++++.+.. ....||+||+ .||+++|+++++.|+
T Consensus 696 ~~~~ILvVddd~~~~~~l~~~L~~~G~~v~~~~s~~~al~~l~~---------~~~~~DlVll--~~~~~~g~~l~~~l~ 764 (828)
T PRK13837 696 RGETVLLVEPDDATLERYEEKLAALGYEPVGFSTLAAAIAWISK---------GPERFDLVLV--DDRLLDEEQAAAALH 764 (828)
T ss_pred CCCEEEEEcCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHHh---------CCCCceEEEE--CCCCCCHHHHHHHHH
Confidence 45689999999999999999999999999999999999998831 1234799999 799999999999999
Q ss_pred ccCCCCCCcEEEEeCCCcHHHHHHHHHcCCceEEeCCCCHHHHHHHHHHHhh
Q 026776 108 DSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVKLSDVKRIKDYLTR 159 (233)
Q Consensus 108 ~~~~~~~~piIvlt~~~~~~~~~~al~~Ga~dyL~KP~~~~eL~~~~~~l~~ 159 (233)
...+ .+|||+++.........+++..| ++||.||++..+|...+..+.+
T Consensus 765 ~~~~--~ipIIvls~~~~~~~~~~~~~~G-~d~L~KP~~~~~L~~~l~~~l~ 813 (828)
T PRK13837 765 AAAP--TLPIILGGNSKTMALSPDLLASV-AEILAKPISSRTLAYALRTALA 813 (828)
T ss_pred hhCC--CCCEEEEeCCCchhhhhhHhhcc-CcEEeCCCCHHHHHHHHHHHHc
Confidence 8655 89999999998888888999999 9999999999999887766554
No 74
>COG3707 AmiR Response regulator with putative antiterminator output domain [Signal transduction mechanisms]
Probab=99.42 E-value=2.5e-12 Score=101.94 Aligned_cols=114 Identities=26% Similarity=0.299 Sum_probs=93.1
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHhhcCCEE-EEECCHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCCCCCHHHHHHHH
Q 026776 28 EEVHVLAVDDSFVDRKVIERLLTISSCKV-TAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKKI 106 (233)
Q Consensus 28 ~~~~ILIVddd~~~~~~l~~~L~~~g~~v-~~a~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp~~~g~~ll~~L 106 (233)
...+||++||+...+..+...|...||.+ .++.++.++...+ ..++||+||+|+.+|..+-.+-+.+.
T Consensus 4 ~~lrvlv~~d~~i~~~~i~~~l~eag~~~Vg~~~~~~~~~~~~-----------~~~~pDvVildie~p~rd~~e~~~~~ 72 (194)
T COG3707 4 MLLRVLVADDEALTRMDIREGLLEAGYQRVGEAADGLEAVEVC-----------ERLQPDVVILDIEMPRRDIIEALLLA 72 (194)
T ss_pred cccceeeccccccchhhHHHHHHHcCCeEeeeecccccchhHH-----------HhcCCCEEEEecCCCCccHHHHHHHh
Confidence 35789999999999999999999999855 4566776776666 56789999999999999944444333
Q ss_pred hccCCCCCCcEEEEeCCCcHHHHHHHHHcCCceEEeCCCCHHHHHHHHH
Q 026776 107 KDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVKLSDVKRIKD 155 (233)
Q Consensus 107 r~~~~~~~~piIvlt~~~~~~~~~~al~~Ga~dyL~KP~~~~eL~~~~~ 155 (233)
.+ ....|||+++++.+...+..++++|+.+|+.||++...|.-++.
T Consensus 73 ~~---~~~~piv~lt~~s~p~~i~~a~~~Gv~ayivkpi~~~rl~p~L~ 118 (194)
T COG3707 73 SE---NVARPIVALTAYSDPALIEAAIEAGVMAYIVKPLDESRLLPILD 118 (194)
T ss_pred hc---CCCCCEEEEEccCChHHHHHHHHcCCeEEEecCcchhhhhHHHH
Confidence 32 23779999999999999999999999999999999888754443
No 75
>PRK09191 two-component response regulator; Provisional
Probab=99.40 E-value=1.2e-11 Score=103.81 Aligned_cols=115 Identities=17% Similarity=0.212 Sum_probs=96.3
Q ss_pred CcEEEEEeCCHHHHHHHHHHHhhcCCEEE-EECCHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCCC-CCHHHHHHHH
Q 026776 29 EVHVLAVDDSFVDRKVIERLLTISSCKVT-AVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPG-MTGYELLKKI 106 (233)
Q Consensus 29 ~~~ILIVddd~~~~~~l~~~L~~~g~~v~-~a~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp~-~~g~~ll~~L 106 (233)
..+|||+||++..+..+...|+..|+.+. .+.++.+++..+ ....||+||+|+.||+ ++|+++++.+
T Consensus 137 ~~~~liidd~~~~~~~l~~~L~~~~~~~~~~~~~~~~~l~~l-----------~~~~~dlvi~d~~~~~~~~g~e~l~~l 205 (261)
T PRK09191 137 ATRVLIIEDEPIIAMDLEQLVESLGHRVTGIARTRAEAVALA-----------KKTRPGLILADIQLADGSSGIDAVNDI 205 (261)
T ss_pred CCeEEEEcCcHHHHHHHHHHHhcCCCEEEEEECCHHHHHHHH-----------hccCCCEEEEecCCCCCCCHHHHHHHH
Confidence 46799999999999999999998899887 688999999887 4567999999999995 8999999999
Q ss_pred hccCCCCCCcEEEEeCCCcHHHHHHHHHcCCceEEeCCCCHHHHHHHHHHHhh
Q 026776 107 KDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVKLSDVKRIKDYLTR 159 (233)
Q Consensus 107 r~~~~~~~~piIvlt~~~~~~~~~~al~~Ga~dyL~KP~~~~eL~~~~~~l~~ 159 (233)
+... .+|+|++++..+... .+...|+.+|+.||++.++|...+..+..
T Consensus 206 ~~~~---~~pii~ls~~~~~~~--~~~~~~~~~~l~kP~~~~~l~~~i~~~~~ 253 (261)
T PRK09191 206 LKTF---DVPVIFITAFPERLL--TGERPEPAFLITKPFQPDTVKAAISQALF 253 (261)
T ss_pred HHhC---CCCEEEEeCCCcHHH--HHHhcccCceEECCCCHHHHHHHHHHHHh
Confidence 8753 789999998765443 33456788999999999999877766543
No 76
>cd00156 REC Signal receiver domain; originally thought to be unique to bacteria (CheY, OmpR, NtrC, and PhoB), now recently identified in eukaroytes ETR1 Arabidopsis thaliana; this domain receives the signal from the sensor partner in a two-component systems; contains a phosphoacceptor site that is phosphorylated by histidine kinase homologs; usually found N-terminal to a DNA binding effector domain; forms homodimers
Probab=99.35 E-value=3.4e-11 Score=84.26 Aligned_cols=110 Identities=32% Similarity=0.548 Sum_probs=96.0
Q ss_pred EEEeCCHHHHHHHHHHHhhcCCEEEEECCHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCCCCCHHHHHHHHhccCCC
Q 026776 33 LAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKKIKDSSAL 112 (233)
Q Consensus 33 LIVddd~~~~~~l~~~L~~~g~~v~~a~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp~~~g~~ll~~Lr~~~~~ 112 (233)
+++++++..+..+...+...|+.+..+.+..+++..+ ....+|++++|..+++.+|.++++.++....
T Consensus 1 l~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~ii~~~~~~~~~~~~~~~~l~~~~~- 68 (113)
T cd00156 1 LIVDDDPLIRELLRRLLEKEGYEVVEAEDGEEALALL-----------AEEKPDLILLDIMMPGMDGLELLRRIRKRGP- 68 (113)
T ss_pred CeecCcHHHHHHHHHHHhhcCceEEEecCHHHHHHHH-----------HhCCCCEEEEecCCCCCchHHHHHHHHHhCC-
Confidence 4789999999999999998899999999999998877 3457999999999999999999999987633
Q ss_pred CCCcEEEEeCCCcHHHHHHHHHcCCceEEeCCCCHHHHHHHHH
Q 026776 113 REIPVVIMSSENILARIDRCLEDGAEDFIVKPVKLSDVKRIKD 155 (233)
Q Consensus 113 ~~~piIvlt~~~~~~~~~~al~~Ga~dyL~KP~~~~eL~~~~~ 155 (233)
..++++++..........++..|+.+|+.||+...++...+.
T Consensus 69 -~~~~i~~~~~~~~~~~~~~~~~~~~~~i~~p~~~~~l~~~l~ 110 (113)
T cd00156 69 -DIPIIFLTAHGDDEDAVEALKAGADDYLTKPFSPEELLARIR 110 (113)
T ss_pred -CCCEEEEEecccHHHHHHHHHcChhhHccCCCCHHHHHHHHH
Confidence 789999988777777888999999999999999988876654
No 77
>PRK13557 histidine kinase; Provisional
Probab=99.32 E-value=5.2e-11 Score=109.35 Aligned_cols=119 Identities=23% Similarity=0.298 Sum_probs=103.9
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHhhcCCEEEEECCHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCCC-CCHHHHHHHH
Q 026776 28 EEVHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPG-MTGYELLKKI 106 (233)
Q Consensus 28 ~~~~ILIVddd~~~~~~l~~~L~~~g~~v~~a~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp~-~~g~~ll~~L 106 (233)
...+|||++++...+..+...|+..||.+..+.++.++++.+. ....||+||+|..+++ ++|+++++.|
T Consensus 414 ~~~~iliv~~~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~----------~~~~~d~vi~d~~~~~~~~~~~~~~~l 483 (540)
T PRK13557 414 GTETILIVDDRPDVAELARMILEDFGYRTLVASNGREALEILD----------SHPEVDLLFTDLIMPGGMNGVMLAREA 483 (540)
T ss_pred CCceEEEEcCcHHHHHHHHHHHHhcCCeEEEeCCHHHHHHHHh----------cCCCceEEEEeccCCCCCCHHHHHHHH
Confidence 3568999999999999999999999999999999999998872 2235999999999997 9999999999
Q ss_pred hccCCCCCCcEEEEeCCCcHHHHHHHHHcCCceEEeCCCCHHHHHHHHHHHh
Q 026776 107 KDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVKLSDVKRIKDYLT 158 (233)
Q Consensus 107 r~~~~~~~~piIvlt~~~~~~~~~~al~~Ga~dyL~KP~~~~eL~~~~~~l~ 158 (233)
+...+ .+++|+++..........++..|+++|+.||++.++|...+..+.
T Consensus 484 ~~~~~--~~~ii~~~~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~l~~~~ 533 (540)
T PRK13557 484 RRRQP--KIKVLLTTGYAEASIERTDAGGSEFDILNKPYRRAELARRVRMVL 533 (540)
T ss_pred HHhCC--CCcEEEEcCCCchhhhhhhccccCCceeeCCCCHHHHHHHHHHHh
Confidence 98654 789999999888777888889999999999999999877666543
No 78
>PRK10693 response regulator of RpoS; Provisional
Probab=99.30 E-value=2.8e-11 Score=104.64 Aligned_cols=87 Identities=31% Similarity=0.584 Sum_probs=75.4
Q ss_pred EECCHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCCCCCHHHHHHHHhccCCCCCCcEEEEeCCCcHHHHHHHHHcCC
Q 026776 58 AVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGA 137 (233)
Q Consensus 58 ~a~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp~~~g~~ll~~Lr~~~~~~~~piIvlt~~~~~~~~~~al~~Ga 137 (233)
.+.++.++++.+ ....||+||+|+.||+++|+++++.+++... .+|+|++++..+.+...++++.|+
T Consensus 2 ~a~~g~~al~~l-----------~~~~pDlVL~D~~mp~~~Gle~~~~ir~~~~--~ipiI~lt~~~~~~~~~~al~~Ga 68 (303)
T PRK10693 2 LAANGVDALELL-----------GGFTPDLIICDLAMPRMNGIEFVEHLRNRGD--QTPVLVISATENMADIAKALRLGV 68 (303)
T ss_pred EeCCHHHHHHHH-----------hcCCCCEEEEeCCCCCCCHHHHHHHHHhcCC--CCcEEEEECCCCHHHHHHHHHCCC
Confidence 467888898887 4567999999999999999999999998654 789999999999999999999999
Q ss_pred ceEEeCCC-CHHHHHHHHHHH
Q 026776 138 EDFIVKPV-KLSDVKRIKDYL 157 (233)
Q Consensus 138 ~dyL~KP~-~~~eL~~~~~~l 157 (233)
+||+.||+ +.++|.+.+...
T Consensus 69 ~dyl~KP~~~~~~L~~~i~~~ 89 (303)
T PRK10693 69 QDVLLKPVKDLNRLREMVFAC 89 (303)
T ss_pred cEEEECCCCcHHHHHHHHHHH
Confidence 99999999 478886655443
No 79
>PRK15029 arginine decarboxylase; Provisional
Probab=99.26 E-value=5.7e-11 Score=112.98 Aligned_cols=107 Identities=19% Similarity=0.265 Sum_probs=89.0
Q ss_pred cEEEEEeCCHH--------HHHHHHHHHhhcCCEEEEECCHHHHHHHhhhhhhhhccCCCC-CcccEEEEcCCCCCCCHH
Q 026776 30 VHVLAVDDSFV--------DRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDG-LKVDLIITDYCMPGMTGY 100 (233)
Q Consensus 30 ~~ILIVddd~~--------~~~~l~~~L~~~g~~v~~a~~~~~al~~l~~~~~~~~~~~~~-~~~DlvllD~~mp~~~g~ 100 (233)
|+|||||||.. .++.+...|+..||+|..+.++++++..+ .. ..||+||+|+.||+++|+
T Consensus 1 MkILIVDDD~~~~~~~~~~i~~~L~~~Le~~G~eV~~a~s~~dAl~~l-----------~~~~~~DlVLLD~~LPd~dG~ 69 (755)
T PRK15029 1 MKVLIVESEFLHQDTWVGNAVERLADALSQQNVTVIKSTSFDDGFAIL-----------SSNEAIDCLMFSYQMEHPDEH 69 (755)
T ss_pred CeEEEEeCCcccccchhHHHHHHHHHHHHHCCCEEEEECCHHHHHHHH-----------HhcCCCcEEEEECCCCCCccc
Confidence 47999999995 69999999999999999999999999998 33 479999999999999997
Q ss_pred ----HHHHHHhccCCCCCCcEEEEeCCCc--HHHHHHHHHcCCceEEeCCCCHHHH
Q 026776 101 ----ELLKKIKDSSALREIPVVIMSSENI--LARIDRCLEDGAEDFIVKPVKLSDV 150 (233)
Q Consensus 101 ----~ll~~Lr~~~~~~~~piIvlt~~~~--~~~~~~al~~Ga~dyL~KP~~~~eL 150 (233)
+++++||.... .+|||++|+..+ .......++ -+++|+.+--+..++
T Consensus 70 ~~~~ell~~IR~~~~--~iPIIlLTar~~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 122 (755)
T PRK15029 70 QNVRQLIGKLHERQQ--NVPVFLLGDREKALAAMDRDLLE-LVDEFAWILEDTADF 122 (755)
T ss_pred hhHHHHHHHHHhhCC--CCCEEEEEcCCcccccCCHHHHH-hhheEEEecCCCHHH
Confidence 89999997654 899999999885 333333333 378899888776664
No 80
>COG3279 LytT Response regulator of the LytR/AlgR family [Transcription / Signal transduction mechanisms]
Probab=99.19 E-value=1.7e-10 Score=96.81 Aligned_cols=115 Identities=28% Similarity=0.505 Sum_probs=95.9
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhcC-CEE-EEECCHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCCCCCHHHHHHHHh
Q 026776 30 VHVLAVDDSFVDRKVIERLLTISS-CKV-TAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKKIK 107 (233)
Q Consensus 30 ~~ILIVddd~~~~~~l~~~L~~~g-~~v-~~a~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp~~~g~~ll~~Lr 107 (233)
++|+++||++..++.+..++.... +++ ..+.++.++++.+ ....+|++++|+.||+++|+++.+.|+
T Consensus 2 ~~i~i~dd~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~fldI~~~~~~G~ela~~i~ 70 (244)
T COG3279 2 LKVLIVDDEPLAREELRRILNEIPDIEIVGEAENGEEALQLL-----------QGLRPDLVFLDIAMPDINGIELAARIR 70 (244)
T ss_pred CcEEEecCCHHHHHHHHHHHHhhhhcCeeeeeccchhhHHHH-----------hccCCCeEEEeeccCccchHHHHHHhc
Confidence 689999999999999999998322 222 2578888999888 455899999999999999999999999
Q ss_pred ccCCCCCCcEEEEeCCCcHHHHHHHHHcCCceEEeCCCCHHHHHHHHHHHhh
Q 026776 108 DSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVKLSDVKRIKDYLTR 159 (233)
Q Consensus 108 ~~~~~~~~piIvlt~~~~~~~~~~al~~Ga~dyL~KP~~~~eL~~~~~~l~~ 159 (233)
...+ ..+|+++|++. +.+..+++..+.||+.||+..+.|...+..+.+
T Consensus 71 ~~~~--~~~Ivfvt~~~--~~a~~afev~a~d~i~kp~~~~~l~~~l~~~~~ 118 (244)
T COG3279 71 KGDP--RPAIVFVTAHD--EYAVAAFEVEALDYLLKPISEERLAKTLERLRR 118 (244)
T ss_pred ccCC--CCeEEEEEehH--HHHHHHHhHHHHhhhcCcchHHHHHHHHHHHHH
Confidence 8754 77888899876 556678889999999999999999877765544
No 81
>PRK11107 hybrid sensory histidine kinase BarA; Provisional
Probab=98.62 E-value=8.2e-07 Score=87.14 Aligned_cols=114 Identities=11% Similarity=0.072 Sum_probs=91.9
Q ss_pred CCCcEEEEEeCCHHHHHHHHHHHhhcCCEEEEECCHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCCCCCHHHHHHHH
Q 026776 27 TEEVHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKKI 106 (233)
Q Consensus 27 ~~~~~ILIVddd~~~~~~l~~~L~~~g~~v~~a~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp~~~g~~ll~~L 106 (233)
.+..+|+++||++..+..+..+|...|+.+..+.++.+ + ....||++++|+.|++..+...+...
T Consensus 534 ~~g~~ili~d~~~~~~~~l~~~L~~~g~~v~~~~~~~~----l-----------~~~~~d~il~~~~~~~~~~~~~~~~~ 598 (919)
T PRK11107 534 LAGKRLLYVEPNSAAAQATLDILSETPLEVTYSPTLSQ----L-----------PEAHYDILLLGLPVTFREPLTMLHER 598 (919)
T ss_pred cCCCeEEEEeCCHHHHHHHHHHHHHCCCEEEEcCCHHH----h-----------ccCCCCEEEecccCCCCCCHHHHHHH
Confidence 45679999999999999999999999999999988877 2 34569999999999987766555444
Q ss_pred hccCCCCCCcEEEEeCCCcHHHHHHHHHcCCceEEeCCCCHHHHHHHHH
Q 026776 107 KDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVKLSDVKRIKD 155 (233)
Q Consensus 107 r~~~~~~~~piIvlt~~~~~~~~~~al~~Ga~dyL~KP~~~~eL~~~~~ 155 (233)
.........++|+++..........+.+.|+++|+.||+...++...+.
T Consensus 599 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~l~ 647 (919)
T PRK11107 599 LAKAKSMTDFLILALPCHEQVLAEQLKQDGADACLSKPLSHTRLLPALL 647 (919)
T ss_pred HHhhhhcCCcEEEEeCCcchhhHHHHhhCCCceEECCCCCHHHHHHHHH
Confidence 3332223556777888888888888999999999999999998866554
No 82
>COG3706 PleD Response regulator containing a CheY-like receiver domain and a GGDEF domain [Signal transduction mechanisms]
Probab=98.15 E-value=2.7e-06 Score=76.39 Aligned_cols=84 Identities=36% Similarity=0.483 Sum_probs=72.2
Q ss_pred CEEEEECCHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCCCCCHHHHHHHHhccCCCCCCcEEEEeCCCcHHHHHHHH
Q 026776 54 CKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKKIKDSSALREIPVVIMSSENILARIDRCL 133 (233)
Q Consensus 54 ~~v~~a~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp~~~g~~ll~~Lr~~~~~~~~piIvlt~~~~~~~~~~al 133 (233)
++|..+..+..++..+ ..+.+|.+++|+.||+++|+++++.+++... .+++++...+.....+.+
T Consensus 13 ~~v~~a~~g~~~l~~~-----------~~~~~~~~lld~~m~~~~~~~~~~~lk~~~~----~~v~~t~~~~~~~~~~~~ 77 (435)
T COG3706 13 KEVATAKKGLIALAIL-----------LDHKPDYKLLDVMMPGMDGFELCRRLKAEPA----TVVMVTALDDSAPRVRGL 77 (435)
T ss_pred hhhhhccchHHHHHHH-----------hcCCCCeEEeecccCCcCchhHHHHHhcCCc----ceEEEEecCCCCcchhHH
Confidence 4566688999999888 5778999999999999999999999998754 278888888888888999
Q ss_pred HcCCceEEeCCCCHHHHHH
Q 026776 134 EDGAEDFIVKPVKLSDVKR 152 (233)
Q Consensus 134 ~~Ga~dyL~KP~~~~eL~~ 152 (233)
++|+++++.||.....+..
T Consensus 78 ~~~~~~~l~~~~~~~~~~~ 96 (435)
T COG3706 78 KAGADDFLTKPVNDSQLFL 96 (435)
T ss_pred hhhhhhhccCCCChHHHHH
Confidence 9999999999998777643
No 83
>smart00448 REC cheY-homologous receiver domain. CheY regulates the clockwise rotation of E. coli flagellar motors. This domain contains a phosphoacceptor site that is phosphorylated by histidine kinase homologues.
Probab=97.89 E-value=0.00011 Score=43.73 Aligned_cols=55 Identities=35% Similarity=0.532 Sum_probs=47.1
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhcCCEEEEECCHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCC
Q 026776 30 VHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMP 95 (233)
Q Consensus 30 ~~ILIVddd~~~~~~l~~~L~~~g~~v~~a~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp 95 (233)
++|+++++++.....+...+...|+.+..+.+...++..+ ....+|++++|+.++
T Consensus 1 ~~i~i~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~vi~~~~~~ 55 (55)
T smart00448 1 MRILVVDDDPLLRELLKALLEREGYEVDEATDGEEALELL-----------KEEKPDLILLDIMMP 55 (55)
T ss_pred CeEEEEcCCHHHHHHHHHHHhhcCcEEEEeCCHHHHHHHH-----------HhcCCCEEEEeccCC
Confidence 4699999999999999999998999999999999988877 344689999998653
No 84
>PF06490 FleQ: Flagellar regulatory protein FleQ; InterPro: IPR010518 This domain is found at the N terminus of a subset of sigma54-dependent transcriptional activators that are involved in regulation of flagellar motility e.g. FleQ in Pseudomonas aeruginosa. It is clearly related to IPR001789 from INTERPRO, but lacks the conserved aspartate residue that undergoes phosphorylation in the classic two-component system response regulator (IPR001789 from INTERPRO).
Probab=97.85 E-value=0.00022 Score=52.39 Aligned_cols=107 Identities=16% Similarity=0.145 Sum_probs=74.5
Q ss_pred EEEEEeCCHHHHHHHHHHHhhcCCEEEEECCHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCCCCCHHHHHHHHhccC
Q 026776 31 HVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKKIKDSS 110 (233)
Q Consensus 31 ~ILIVddd~~~~~~l~~~L~~~g~~v~~a~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp~~~g~~ll~~Lr~~~ 110 (233)
||||||||...+..+..+|+=.|+++..+...+- .... .....+.+++-..-.+ ...+.++.+-+..
T Consensus 1 kILvIddd~~R~~~L~~ILeFlGe~~~~~~~~~~-~~~~-----------~~~~~~~~~v~~g~~~-~~~~~l~~l~~~~ 67 (109)
T PF06490_consen 1 KILVIDDDAERRQRLSTILEFLGEQCEAVSSSDW-SQAD-----------WSSPWEACAVILGSCS-KLAELLKELLKWA 67 (109)
T ss_pred CEEEECCcHHHHHhhhhhhhhcCCCeEEecHHHH-HHhh-----------hhcCCcEEEEEecCch-hHHHHHHHHHhhC
Confidence 6999999999999999999988998888776443 2221 2233444443332222 5577888887766
Q ss_pred CCCCCcEEEEeCCCcHHHHHHHHHcCCceEEeCCCCHHHHHHHHHHH
Q 026776 111 ALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVKLSDVKRIKDYL 157 (233)
Q Consensus 111 ~~~~~piIvlt~~~~~~~~~~al~~Ga~dyL~KP~~~~eL~~~~~~l 157 (233)
+ .+|++++......... ..+.+-|..|++..+|..++++.
T Consensus 68 ~--~~Pvlllg~~~~~~~~-----~nvvg~Le~Pl~Y~qLt~~L~~c 107 (109)
T PF06490_consen 68 P--HIPVLLLGEHDSPEEL-----PNVVGELEEPLNYPQLTDALHRC 107 (109)
T ss_pred C--CCCEEEECCCCccccc-----cCeeEecCCCCCHHHHHHHHHHh
Confidence 5 9999999877654111 12677799999999997776543
No 85
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=97.62 E-value=0.0029 Score=47.30 Aligned_cols=105 Identities=15% Similarity=0.053 Sum_probs=74.4
Q ss_pred eCCHHHHHHHHHHHhhcCCEEEEEC---CHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCCCC--CHHHHHHHHhccC
Q 026776 36 DDSFVDRKVIERLLTISSCKVTAVD---SGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGM--TGYELLKKIKDSS 110 (233)
Q Consensus 36 ddd~~~~~~l~~~L~~~g~~v~~a~---~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp~~--~g~~ll~~Lr~~~ 110 (233)
|.+..-...+..+|+..||+|.... ..++..+.+ ....+|+|.+...+... .--++++.|++..
T Consensus 10 d~H~lG~~~~~~~l~~~G~~vi~lG~~vp~e~~~~~a-----------~~~~~d~V~iS~~~~~~~~~~~~~~~~L~~~~ 78 (122)
T cd02071 10 DGHDRGAKVIARALRDAGFEVIYTGLRQTPEEIVEAA-----------IQEDVDVIGLSSLSGGHMTLFPEVIELLRELG 78 (122)
T ss_pred ChhHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHH-----------HHcCCCEEEEcccchhhHHHHHHHHHHHHhcC
Confidence 4556666677778899999998754 466676766 45689999998876533 2356677787764
Q ss_pred CCCCCcEEEEeCCCcHHHHHHHHHcCCceEEeCCCCHHHHHHH
Q 026776 111 ALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVKLSDVKRI 153 (233)
Q Consensus 111 ~~~~~piIvlt~~~~~~~~~~al~~Ga~dyL~KP~~~~eL~~~ 153 (233)
. ....+++.+....+...++.++|+++|+..-.+.+++...
T Consensus 79 ~--~~i~i~~GG~~~~~~~~~~~~~G~d~~~~~~~~~~~~~~~ 119 (122)
T cd02071 79 A--GDILVVGGGIIPPEDYELLKEMGVAEIFGPGTSIEEIIDK 119 (122)
T ss_pred C--CCCEEEEECCCCHHHHHHHHHCCCCEEECCCCCHHHHHHH
Confidence 3 3344555555555667788899999999998888876544
No 86
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=97.56 E-value=0.0054 Score=46.90 Aligned_cols=115 Identities=14% Similarity=0.066 Sum_probs=81.9
Q ss_pred CCcEEEEE----eCCHHHHHHHHHHHhhcCCEEEEEC---CHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCCCC--C
Q 026776 28 EEVHVLAV----DDSFVDRKVIERLLTISSCKVTAVD---SGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGM--T 98 (233)
Q Consensus 28 ~~~~ILIV----ddd~~~~~~l~~~L~~~g~~v~~a~---~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp~~--~ 98 (233)
++.+|++. |.+..-...+..+|+..||+|.... ..++..+.+ .+..+|+|.+...+... .
T Consensus 2 ~~~~vl~~~~~gD~H~lG~~iv~~~lr~~G~eVi~LG~~vp~e~i~~~a-----------~~~~~d~V~lS~~~~~~~~~ 70 (137)
T PRK02261 2 KKKTVVLGVIGADCHAVGNKILDRALTEAGFEVINLGVMTSQEEFIDAA-----------IETDADAILVSSLYGHGEID 70 (137)
T ss_pred CCCEEEEEeCCCChhHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHH-----------HHcCCCEEEEcCccccCHHH
Confidence 56778877 7777777888888999999998854 566777776 45689999999877743 3
Q ss_pred HHHHHHHHhccCCCCCCcEEEEeCCC------cHHHHHHHHHcCCceEEeCCCCHHHHHHHHH
Q 026776 99 GYELLKKIKDSSALREIPVVIMSSEN------ILARIDRCLEDGAEDFIVKPVKLSDVKRIKD 155 (233)
Q Consensus 99 g~~ll~~Lr~~~~~~~~piIvlt~~~------~~~~~~~al~~Ga~dyL~KP~~~~eL~~~~~ 155 (233)
..++++.|++... .+++|+ +.+.. ..+...++.+.|++.++....+.+++...++
T Consensus 71 ~~~~~~~L~~~~~-~~~~i~-vGG~~~~~~~~~~~~~~~l~~~G~~~vf~~~~~~~~i~~~l~ 131 (137)
T PRK02261 71 CRGLREKCIEAGL-GDILLY-VGGNLVVGKHDFEEVEKKFKEMGFDRVFPPGTDPEEAIDDLK 131 (137)
T ss_pred HHHHHHHHHhcCC-CCCeEE-EECCCCCCccChHHHHHHHHHcCCCEEECcCCCHHHHHHHHH
Confidence 4677888887643 245444 43332 2445567889999999988887777755443
No 87
>PF03709 OKR_DC_1_N: Orn/Lys/Arg decarboxylase, N-terminal domain; InterPro: IPR005308 This domain has a flavodoxin-like fold, and is termed the "wing" domain because of its position in the overall 3D structure. Ornithine decarboxylase from Lactobacillus 30a (L30a OrnDC, P43099 from SWISSPROT) is representative of the large, pyridoxal-5'-phosphate-dependent decarboxylases that act on lysine, arginine or ornithine. The crystal structure of the L30a OrnDC has been solved to 3.0 A resolution. Six dimers related by C6 symmetry compose the enzymatically active dodecamer (approximately 106 Da). Each monomer of L30a OrnDC can be described in terms of five sequential folding domains. The amino-terminal domain, residues 1 to 107, consists of a five-stranded beta-sheet termed the "wing" domain. Two wing domains of each dimer project inward towards the centre of the dodecamer and contribute to dodecamer stabilisation [].; GO: 0016831 carboxy-lyase activity; PDB: 3Q16_C 3N75_A 1C4K_A 1ORD_A 2VYC_D.
Probab=97.56 E-value=0.0011 Score=49.09 Aligned_cols=96 Identities=17% Similarity=0.231 Sum_probs=75.0
Q ss_pred HHHHHHHHhhcCCEEEEECCHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCCC--CCHHHHHHHHhccCCCCCCcEEE
Q 026776 42 RKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPG--MTGYELLKKIKDSSALREIPVVI 119 (233)
Q Consensus 42 ~~~l~~~L~~~g~~v~~a~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp~--~~g~~ll~~Lr~~~~~~~~piIv 119 (233)
...+...|...|++|+.+.+.++++..+. ....+++|++|+. ++ ....++++.++..+. .+||.+
T Consensus 6 ~~~l~~~L~~~~~~vv~~~~~dd~~~~i~----------~~~~i~avvi~~d-~~~~~~~~~ll~~i~~~~~--~iPVFl 72 (115)
T PF03709_consen 6 SRELAEALEQRGREVVDADSTDDALAIIE----------SFTDIAAVVISWD-GEEEDEAQELLDKIRERNF--GIPVFL 72 (115)
T ss_dssp HHHHHHHHHHTTTEEEEESSHHHHHHHHH----------CTTTEEEEEEECH-HHHHHHHHHHHHHHHHHST--T-EEEE
T ss_pred HHHHHHHHHHCCCEEEEeCChHHHHHHHH----------hCCCeeEEEEEcc-cccchhHHHHHHHHHHhCC--CCCEEE
Confidence 34567778889999999999999999995 3457899999986 21 235678999999877 999999
Q ss_pred EeCCCcHHHHHHHHHcCCceEEeCCCCHHHH
Q 026776 120 MSSENILARIDRCLEDGAEDFIVKPVKLSDV 150 (233)
Q Consensus 120 lt~~~~~~~~~~al~~Ga~dyL~KP~~~~eL 150 (233)
++.....+.+...+-..+++|+....+..++
T Consensus 73 ~~~~~~~~~l~~~~l~~v~~~i~l~~~t~~f 103 (115)
T PF03709_consen 73 LAERDTTEDLPAEVLGEVDGFIWLFEDTAEF 103 (115)
T ss_dssp EESCCHHHCCCHHHHCCESEEEETTTTTHHH
T ss_pred EecCCCcccCCHHHHhhccEEEEecCCCHHH
Confidence 9987766655555666789999998776665
No 88
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=97.39 E-value=0.014 Score=44.32 Aligned_cols=114 Identities=13% Similarity=0.041 Sum_probs=76.8
Q ss_pred CcEEEEE----eCCHHHHHHHHHHHhhcCCEEEEE---CCHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCCCC--CH
Q 026776 29 EVHVLAV----DDSFVDRKVIERLLTISSCKVTAV---DSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGM--TG 99 (233)
Q Consensus 29 ~~~ILIV----ddd~~~~~~l~~~L~~~g~~v~~a---~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp~~--~g 99 (233)
+++|++. |-+..-...+..+|+..||+|... .+.++..+.. .+..+|+|.+...+... .-
T Consensus 2 ~~~v~~a~~g~D~Hd~g~~iv~~~l~~~GfeVi~lg~~~s~e~~v~aa-----------~e~~adii~iSsl~~~~~~~~ 70 (132)
T TIGR00640 2 RPRILVAKMGQDGHDRGAKVIATAYADLGFDVDVGPLFQTPEEIARQA-----------VEADVHVVGVSSLAGGHLTLV 70 (132)
T ss_pred CCEEEEEeeCCCccHHHHHHHHHHHHhCCcEEEECCCCCCHHHHHHHH-----------HHcCCCEEEEcCchhhhHHHH
Confidence 3555554 556667778888999999999874 3677777776 45678999987655321 23
Q ss_pred HHHHHHHhccCCCCCCcEEEEeCCCcHHHHHHHHHcCCceEEeCCCCHHHHHHHHH
Q 026776 100 YELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVKLSDVKRIKD 155 (233)
Q Consensus 100 ~~ll~~Lr~~~~~~~~piIvlt~~~~~~~~~~al~~Ga~dyL~KP~~~~eL~~~~~ 155 (233)
-++++.|++... ..++ |++.+....+...+..++|+++|+..--+..++...+.
T Consensus 71 ~~~~~~L~~~g~-~~i~-vivGG~~~~~~~~~l~~~Gvd~~~~~gt~~~~i~~~l~ 124 (132)
T TIGR00640 71 PALRKELDKLGR-PDIL-VVVGGVIPPQDFDELKEMGVAEIFGPGTPIPESAIFLL 124 (132)
T ss_pred HHHHHHHHhcCC-CCCE-EEEeCCCChHhHHHHHHCCCCEEECCCCCHHHHHHHHH
Confidence 456777777543 2333 44444334455677889999999998888888654433
No 89
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=97.07 E-value=0.012 Score=43.55 Aligned_cols=96 Identities=14% Similarity=0.198 Sum_probs=65.1
Q ss_pred eCCHHHHHHHHHHHhhcCCEEEEEC---CHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCCC--CCHHHHHHHHhccC
Q 026776 36 DDSFVDRKVIERLLTISSCKVTAVD---SGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPG--MTGYELLKKIKDSS 110 (233)
Q Consensus 36 ddd~~~~~~l~~~L~~~g~~v~~a~---~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp~--~~g~~ll~~Lr~~~ 110 (233)
|.+..-...+..+|+..||+|.... ..++.++.+ .+..||+|.+...+.. ....++++.+|+..
T Consensus 10 e~H~lG~~~~~~~l~~~G~~V~~lg~~~~~~~l~~~~-----------~~~~pdvV~iS~~~~~~~~~~~~~i~~l~~~~ 78 (119)
T cd02067 10 DGHDIGKNIVARALRDAGFEVIDLGVDVPPEEIVEAA-----------KEEDADAIGLSGLLTTHMTLMKEVIEELKEAG 78 (119)
T ss_pred chhhHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHH-----------HHcCCCEEEEeccccccHHHHHHHHHHHHHcC
Confidence 4556666778888999999997643 455666666 4668999999877553 24567888888764
Q ss_pred CCCCCcEEEEeCCCcHHHHHHHHHcCCceEEeCC
Q 026776 111 ALREIPVVIMSSENILARIDRCLEDGAEDFIVKP 144 (233)
Q Consensus 111 ~~~~~piIvlt~~~~~~~~~~al~~Ga~dyL~KP 144 (233)
+ .+++ |++.+.........+.+.|+|.|+...
T Consensus 79 ~-~~~~-i~vGG~~~~~~~~~~~~~G~D~~~~~~ 110 (119)
T cd02067 79 L-DDIP-VLVGGAIVTRDFKFLKEIGVDAYFGPA 110 (119)
T ss_pred C-CCCe-EEEECCCCChhHHHHHHcCCeEEECCH
Confidence 3 2444 445555443434567889998887643
No 90
>PRK10618 phosphotransfer intermediate protein in two-component regulatory system with RcsBC; Provisional
Probab=96.61 E-value=0.0027 Score=62.70 Aligned_cols=51 Identities=25% Similarity=0.175 Sum_probs=43.5
Q ss_pred CCCcEEEEEeCCHHHHHHHHHHHhhcCCEEEEECCHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCC
Q 026776 27 TEEVHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCM 94 (233)
Q Consensus 27 ~~~~~ILIVddd~~~~~~l~~~L~~~g~~v~~a~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~m 94 (233)
.+..+|||+||++.++..+..+|+.+|++|..+.++ . ....||+||+|+++
T Consensus 687 l~g~~vLlvdD~~~~r~~l~~~L~~~G~~v~~a~~~------~-----------~~~~~Dlvl~D~~~ 737 (894)
T PRK10618 687 LDGVTVLLDITSEEVRKIVTRQLENWGATCITPDER------L-----------ISQEYDIFLTDNPS 737 (894)
T ss_pred CCCCEEEEEeCCHHHHHHHHHHHHHCCCEEEEcCcc------c-----------cCCCCCEEEECCCC
Confidence 456899999999999999999999999999988752 1 34569999999984
No 91
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=96.43 E-value=0.14 Score=39.21 Aligned_cols=118 Identities=17% Similarity=0.163 Sum_probs=78.7
Q ss_pred CCCcEEEEE----eCCHHHHHHHHHHHhhcCCEEEE---ECCHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCCC-C-
Q 026776 27 TEEVHVLAV----DDSFVDRKVIERLLTISSCKVTA---VDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPG-M- 97 (233)
Q Consensus 27 ~~~~~ILIV----ddd~~~~~~l~~~L~~~g~~v~~---a~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp~-~- 97 (233)
.+++||++. |-+..-...+.+.|+..||+|.. ..+.+|+.+.. .+...|+|.+..--.+ +
T Consensus 10 g~rprvlvak~GlDgHd~gakvia~~l~d~GfeVi~~g~~~tp~e~v~aA-----------~~~dv~vIgvSsl~g~h~~ 78 (143)
T COG2185 10 GARPRVLVAKLGLDGHDRGAKVIARALADAGFEVINLGLFQTPEEAVRAA-----------VEEDVDVIGVSSLDGGHLT 78 (143)
T ss_pred CCCceEEEeccCccccccchHHHHHHHHhCCceEEecCCcCCHHHHHHHH-----------HhcCCCEEEEEeccchHHH
Confidence 367888876 77888889999999999999986 56888888776 3456788877543221 1
Q ss_pred CHHHHHHHHhccCCCCCCcEEEEeCCCcHHHHHHHHHcCCceEEeCCCCHHHHH-HHHHHH
Q 026776 98 TGYELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVKLSDVK-RIKDYL 157 (233)
Q Consensus 98 ~g~~ll~~Lr~~~~~~~~piIvlt~~~~~~~~~~al~~Ga~dyL~KP~~~~eL~-~~~~~l 157 (233)
..-.+.+.||+... ..+ +++..+.-..+......+.|++.|+.--....+.. .++..+
T Consensus 79 l~~~lve~lre~G~-~~i-~v~~GGvip~~d~~~l~~~G~~~if~pgt~~~~~~~~v~~~l 137 (143)
T COG2185 79 LVPGLVEALREAGV-EDI-LVVVGGVIPPGDYQELKEMGVDRIFGPGTPIEEALSDLLTRL 137 (143)
T ss_pred HHHHHHHHHHHhCC-cce-EEeecCccCchhHHHHHHhCcceeeCCCCCHHHHHHHHHHHH
Confidence 23456666776653 122 23444444455566777899999998777766653 344443
No 92
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=96.38 E-value=0.17 Score=38.54 Aligned_cols=107 Identities=12% Similarity=0.041 Sum_probs=71.7
Q ss_pred CCHHHHHHHHHHHhhcCCEEEEE---CCHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCCCCC--HHHHHHHHhccCC
Q 026776 37 DSFVDRKVIERLLTISSCKVTAV---DSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMT--GYELLKKIKDSSA 111 (233)
Q Consensus 37 dd~~~~~~l~~~L~~~g~~v~~a---~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp~~~--g~~ll~~Lr~~~~ 111 (233)
-+..-...+..+|+..||+|... -+.++.++.+ .++.+|+|.+..-|...- --++.+.|++...
T Consensus 13 ~HdiGk~iv~~~l~~~GfeVi~LG~~v~~e~~v~aa-----------~~~~adiVglS~l~~~~~~~~~~~~~~l~~~gl 81 (134)
T TIGR01501 13 CHAVGNKILDHAFTNAGFNVVNLGVLSPQEEFIKAA-----------IETKADAILVSSLYGHGEIDCKGLRQKCDEAGL 81 (134)
T ss_pred hhhHhHHHHHHHHHHCCCEEEECCCCCCHHHHHHHH-----------HHcCCCEEEEecccccCHHHHHHHHHHHHHCCC
Confidence 34555667888899999999874 4677777776 456899999987775332 4456777877654
Q ss_pred CCCCcEEEEeCC-----CcHH-HHHHHHHcCCceEEeCCCCHHHHHHHHHH
Q 026776 112 LREIPVVIMSSE-----NILA-RIDRCLEDGAEDFIVKPVKLSDVKRIKDY 156 (233)
Q Consensus 112 ~~~~piIvlt~~-----~~~~-~~~~al~~Ga~dyL~KP~~~~eL~~~~~~ 156 (233)
.. +.+++.+. .+.. ...++.++|++..+...-..+++...++.
T Consensus 82 -~~-~~vivGG~~vi~~~d~~~~~~~l~~~Gv~~vF~pgt~~~~iv~~l~~ 130 (134)
T TIGR01501 82 -EG-ILLYVGGNLVVGKQDFPDVEKRFKEMGFDRVFAPGTPPEVVIADLKK 130 (134)
T ss_pred -CC-CEEEecCCcCcChhhhHHHHHHHHHcCCCEEECcCCCHHHHHHHHHH
Confidence 23 34555543 1111 23467889999999888777777555443
No 93
>PRK15399 lysine decarboxylase LdcC; Provisional
Probab=96.17 E-value=0.072 Score=51.24 Aligned_cols=102 Identities=14% Similarity=0.110 Sum_probs=70.3
Q ss_pred cEEEEEeCCH-HH-----HHHHHHHHhhcCCEEEEECCHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCCCCCHHHHH
Q 026776 30 VHVLAVDDSF-VD-----RKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELL 103 (233)
Q Consensus 30 ~~ILIVddd~-~~-----~~~l~~~L~~~g~~v~~a~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp~~~g~~ll 103 (233)
++|+||+++. .. ...|.+.|+..||+|..+.+..+++..+. ......+|++|++-. ...++
T Consensus 1 ~~~~~i~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~---~~~~~ 67 (713)
T PRK15399 1 MNIIAIMGPHGVFYKDEPIKELESALQAQGFQTIWPQNSVDLLKFIE----------HNPRICGVIFDWDEY---SLDLC 67 (713)
T ss_pred CcEEEEecccccccccHHHHHHHHHHHHCCcEEEEecCHHHHHHHHh----------cccceeEEEEecccc---hHHHH
Confidence 4678887763 11 34566677889999999999999999874 344688999996433 35689
Q ss_pred HHHhccCCCCCCcEEEEeCCCcHHHHHHHHHcCCceEEeCCCC
Q 026776 104 KKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVK 146 (233)
Q Consensus 104 ~~Lr~~~~~~~~piIvlt~~~~~~~~~~al~~Ga~dyL~KP~~ 146 (233)
+.+|+... .+||+++........+....-.-+++|+..-.+
T Consensus 68 ~~~~~~~~--~~Pv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (713)
T PRK15399 68 SDINQLNE--YLPLYAFINTHSTMDVSVQDMRMALWFFEYALG 108 (713)
T ss_pred HHHHHhCC--CCCEEEEcCccccccCChhHhhhcceeeeeccC
Confidence 99998876 999999977543333322333345666665443
No 94
>COG4999 Uncharacterized domain of BarA-like signal transduction histidine kinases [Signal transduction mechanisms]
Probab=96.04 E-value=0.036 Score=40.96 Aligned_cols=109 Identities=10% Similarity=0.129 Sum_probs=74.2
Q ss_pred CCCcEEEEEeCCHHHHHHHHHHHhhcCCEEEEECCHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCCCCCHHHHHH--
Q 026776 27 TEEVHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLK-- 104 (233)
Q Consensus 27 ~~~~~ILIVddd~~~~~~l~~~L~~~g~~v~~a~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp~~~g~~ll~-- 104 (233)
-..-+.+.||.|.........+|...+.+|+.-.+..+. -...||++++.+-.+-.+...+-.
T Consensus 9 L~gk~LayiEpNstAA~~t~~iL~~tpleVtyr~t~~~l---------------p~~hYD~~Ll~vavtfr~n~tm~~~~ 73 (140)
T COG4999 9 LAGKRLAYIEPNSTAAQCTLDILSETPLEVTYRPTFSAL---------------PPAHYDMMLLGVAVTFRENLTMQHER 73 (140)
T ss_pred hccceeEEecCccHHHHHHHHHHhcCCceEEeccccccc---------------ChhhhceeeecccccccCCchHHHHH
Confidence 345689999999999999999999999999876554322 234699999998877554433322
Q ss_pred HHhccCCCCCCcEEEEeCCCcHHHHHHHHHcCCceEEeCCCCHHHHHH
Q 026776 105 KIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVKLSDVKR 152 (233)
Q Consensus 105 ~Lr~~~~~~~~piIvlt~~~~~~~~~~al~~Ga~dyL~KP~~~~eL~~ 152 (233)
..+... ..+-.|+.+ .......+.+....|+.++|.||++.-.|..
T Consensus 74 l~~Al~-mtd~vilal-Ps~~qv~AeqLkQ~g~~~CllKPls~~rLlp 119 (140)
T COG4999 74 LAKALS-MTDFVILAL-PSHAQVNAEQLKQDGAGACLLKPLSSTRLLP 119 (140)
T ss_pred HHHHHh-hhcceEEec-CcHHHHhHHHHhhcchHhHhhCcchhhhhHH
Confidence 112211 113333333 3334455677888999999999999888754
No 95
>cd02070 corrinoid_protein_B12-BD B12 binding domain of corrinoid proteins. A family of small methanogenic corrinoid proteins that bind methyl-Co(III) 5-hydroxybenzimidazolylcobamide as a cofactor. They play a role on the methanogenesis from trimethylamine, dimethylamine or monomethylamine, which is initiated by a series of corrinoid-dependent methyltransferases.
Probab=96.03 E-value=0.15 Score=41.42 Aligned_cols=101 Identities=13% Similarity=0.141 Sum_probs=69.8
Q ss_pred CcEEEEE----eCCHHHHHHHHHHHhhcCCEEEEEC---CHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCCCC--CH
Q 026776 29 EVHVLAV----DDSFVDRKVIERLLTISSCKVTAVD---SGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGM--TG 99 (233)
Q Consensus 29 ~~~ILIV----ddd~~~~~~l~~~L~~~g~~v~~a~---~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp~~--~g 99 (233)
+.+|++. |-+..=...+..+|+..||+|.... ..++.++.+ ....||+|.+...|... ..
T Consensus 82 ~~~vl~~~~~gd~H~lG~~~v~~~l~~~G~~vi~lG~~~p~~~l~~~~-----------~~~~~d~v~lS~~~~~~~~~~ 150 (201)
T cd02070 82 KGKVVIGTVEGDIHDIGKNLVATMLEANGFEVIDLGRDVPPEEFVEAV-----------KEHKPDILGLSALMTTTMGGM 150 (201)
T ss_pred CCeEEEEecCCccchHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHH-----------HHcCCCEEEEeccccccHHHH
Confidence 4567766 6666667788888999999998643 456777776 56689999999877643 45
Q ss_pred HHHHHHHhccCCCCCCcEEEEeCCCcHHHHHHHHHcCCceEEeC
Q 026776 100 YELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVK 143 (233)
Q Consensus 100 ~~ll~~Lr~~~~~~~~piIvlt~~~~~~~~~~al~~Ga~dyL~K 143 (233)
.++++.||+.....+++|++-...-..+ -+-..|||.|-.-
T Consensus 151 ~~~i~~lr~~~~~~~~~i~vGG~~~~~~---~~~~~GaD~~~~d 191 (201)
T cd02070 151 KEVIEALKEAGLRDKVKVMVGGAPVNQE---FADEIGADGYAED 191 (201)
T ss_pred HHHHHHHHHCCCCcCCeEEEECCcCCHH---HHHHcCCcEEECC
Confidence 6778888887543356665544333332 3556799988753
No 96
>PRK15400 lysine decarboxylase CadA; Provisional
Probab=95.93 E-value=0.09 Score=50.61 Aligned_cols=100 Identities=13% Similarity=0.167 Sum_probs=68.0
Q ss_pred cEEEEEeCCH-H-----HHHHHHHHHhhcCCEEEEECCHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCCCCCHHHHH
Q 026776 30 VHVLAVDDSF-V-----DRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELL 103 (233)
Q Consensus 30 ~~ILIVddd~-~-----~~~~l~~~L~~~g~~v~~a~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp~~~g~~ll 103 (233)
|+|++|+++. . -.+.|...|++.||+|..+.+..+++..+. ......+|++|++- ....++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~---~~~~~~ 67 (714)
T PRK15400 1 MNVIAILNHMGVYFKEEPIRELHRALERLNFQIVYPNDRDDLLKLIE----------NNARLCGVIFDWDK---YNLELC 67 (714)
T ss_pred CcEEEEccccccccccHHHHHHHHHHHHCCcEEEEeCCHHHHHHHHh----------cccceeEEEEecch---hhHHHH
Confidence 4677787662 1 144566677889999999999999999874 34467899999643 235589
Q ss_pred HHHhccCCCCCCcEEEEeCCCcHHHHHHHHHcCCceEEeCC
Q 026776 104 KKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKP 144 (233)
Q Consensus 104 ~~Lr~~~~~~~~piIvlt~~~~~~~~~~al~~Ga~dyL~KP 144 (233)
+.+|.... .+||+++........+....-.-+++|+..-
T Consensus 68 ~~~~~~~~--~~Pv~~~~~~~~~~~~~~~~l~~~~~~~~~~ 106 (714)
T PRK15400 68 EEISKMNE--NLPLYAFANTYSTLDVSLNDLRLQVSFFEYA 106 (714)
T ss_pred HHHHHhCC--CCCEEEEccccccccCChHHhhhccceeeec
Confidence 99998876 9999999775433322222223355666544
No 97
>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin). Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....
Probab=95.50 E-value=0.29 Score=35.83 Aligned_cols=93 Identities=15% Similarity=0.226 Sum_probs=60.5
Q ss_pred CHHHHHHHHHHHhhcCCEEEEEC---CHHHHHHHhhhhhhhhccCCCCCcccEEEEcC-CCCCC-CHHHHHHHHhccCCC
Q 026776 38 SFVDRKVIERLLTISSCKVTAVD---SGRRALQFLGLDEEQSINGFDGLKVDLIITDY-CMPGM-TGYELLKKIKDSSAL 112 (233)
Q Consensus 38 d~~~~~~l~~~L~~~g~~v~~a~---~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~-~mp~~-~g~~ll~~Lr~~~~~ 112 (233)
.+.-...+..+|++.||+|...+ +.++..+.+ ...+||+|.+.. ..+.. ...++++.+|+..+
T Consensus 13 ~~lGl~~la~~l~~~G~~v~~~d~~~~~~~l~~~~-----------~~~~pd~V~iS~~~~~~~~~~~~l~~~~k~~~p- 80 (121)
T PF02310_consen 13 HPLGLLYLAAYLRKAGHEVDILDANVPPEELVEAL-----------RAERPDVVGISVSMTPNLPEAKRLARAIKERNP- 80 (121)
T ss_dssp TSHHHHHHHHHHHHTTBEEEEEESSB-HHHHHHHH-----------HHTTCSEEEEEESSSTHHHHHHHHHHHHHTTCT-
T ss_pred hhHHHHHHHHHHHHCCCeEEEECCCCCHHHHHHHH-----------hcCCCcEEEEEccCcCcHHHHHHHHHHHHhcCC-
Confidence 45667788999999999998763 345666665 345799999988 33333 45677888877655
Q ss_pred CCCcEEEEeCCCcHHHHHHHHH--cCCceEEeCC
Q 026776 113 REIPVVIMSSENILARIDRCLE--DGAEDFIVKP 144 (233)
Q Consensus 113 ~~~piIvlt~~~~~~~~~~al~--~Ga~dyL~KP 144 (233)
++++++--.+... .-...++ .|+|..+.-.
T Consensus 81 -~~~iv~GG~~~t~-~~~~~l~~~~~~D~vv~Ge 112 (121)
T PF02310_consen 81 -NIPIVVGGPHATA-DPEEILREYPGIDYVVRGE 112 (121)
T ss_dssp -TSEEEEEESSSGH-HHHHHHHHHHTSEEEEEET
T ss_pred -CCEEEEECCchhc-ChHHHhccCcCcceecCCC
Confidence 6666665554432 2334454 6777766543
No 98
>cd02069 methionine_synthase_B12_BD B12 binding domain of methionine synthase. This domain binds methylcobalamin, which it uses as an intermediate methyl carrier from methyltetrahydrofolate (CH3H4folate) to homocysteine (Hcy).
Probab=95.44 E-value=0.24 Score=40.74 Aligned_cols=103 Identities=13% Similarity=0.139 Sum_probs=69.7
Q ss_pred CcEEEEE----eCCHHHHHHHHHHHhhcCCEEEEEC---CHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCCCC--CH
Q 026776 29 EVHVLAV----DDSFVDRKVIERLLTISSCKVTAVD---SGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGM--TG 99 (233)
Q Consensus 29 ~~~ILIV----ddd~~~~~~l~~~L~~~g~~v~~a~---~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp~~--~g 99 (233)
.-+|++. |.+..=...+..+|+..||+|.... ..++.++.+ .+.++|+|.+...|+.. .-
T Consensus 88 ~~~vvl~t~~gd~HdiG~~iv~~~l~~~G~~Vi~LG~~vp~e~~v~~~-----------~~~~~~~V~lS~~~~~~~~~~ 156 (213)
T cd02069 88 KGKIVLATVKGDVHDIGKNLVGVILSNNGYEVIDLGVMVPIEKILEAA-----------KEHKADIIGLSGLLVPSLDEM 156 (213)
T ss_pred CCeEEEEeCCCchhHHHHHHHHHHHHhCCCEEEECCCCCCHHHHHHHH-----------HHcCCCEEEEccchhccHHHH
Confidence 4566666 5667667777888899999998854 466677776 56789999999887743 34
Q ss_pred HHHHHHHhccCCCCCCcEEEEeCCCcHHHHHH---HHHcCCceEEeCC
Q 026776 100 YELLKKIKDSSALREIPVVIMSSENILARIDR---CLEDGAEDFIVKP 144 (233)
Q Consensus 100 ~~ll~~Lr~~~~~~~~piIvlt~~~~~~~~~~---al~~Ga~dyL~KP 144 (233)
-++++.|++.+. +++|++-....+.+.... +-..|||.|-.-.
T Consensus 157 ~~~i~~L~~~~~--~~~i~vGG~~~~~~~~~~~~~~~~~gad~y~~da 202 (213)
T cd02069 157 VEVAEEMNRRGI--KIPLLIGGAATSRKHTAVKIAPEYDGPVVYVKDA 202 (213)
T ss_pred HHHHHHHHhcCC--CCeEEEEChhcCHHHHhhhhccccCCCceEecCH
Confidence 567888887644 677665544444443322 2346998887543
No 99
>PRK09426 methylmalonyl-CoA mutase; Reviewed
Probab=95.37 E-value=0.46 Score=46.01 Aligned_cols=118 Identities=15% Similarity=0.104 Sum_probs=76.2
Q ss_pred CCCcEEEEE----eCCHHHHHHHHHHHhhcCCEEEEE---CCHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCCCC--
Q 026776 27 TEEVHVLAV----DDSFVDRKVIERLLTISSCKVTAV---DSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGM-- 97 (233)
Q Consensus 27 ~~~~~ILIV----ddd~~~~~~l~~~L~~~g~~v~~a---~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp~~-- 97 (233)
.++.+|++. |.+..-...+..+|+..||+|..- .+.+++.+.. ....+|+|++...+...
T Consensus 580 g~rpkV~LatlG~d~H~~ra~fv~~~l~~~GfeV~~~~~~~s~e~~v~aa-----------~~~~a~ivvlcs~d~~~~e 648 (714)
T PRK09426 580 GRRPRILVAKMGQDGHDRGAKVIATAFADLGFDVDIGPLFQTPEEAARQA-----------VENDVHVVGVSSLAAGHKT 648 (714)
T ss_pred CCCceEEEEecCCcchhHhHHHHHHHHHhCCeeEecCCCCCCHHHHHHHH-----------HHcCCCEEEEeccchhhHH
Confidence 345677655 345555667788889999999643 3567777776 34568888886555432
Q ss_pred CHHHHHHHHhccCCCCCCcEEEEeCCCcHHHHHHHHHcCCceEEeCCCCHHHHH-HHHHHH
Q 026776 98 TGYELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVKLSDVK-RIKDYL 157 (233)
Q Consensus 98 ~g~~ll~~Lr~~~~~~~~piIvlt~~~~~~~~~~al~~Ga~dyL~KP~~~~eL~-~~~~~l 157 (233)
..-.+++.|++... .+++ |++.+.--.+....+.++|+|+|+..-.+..++. .+.+.+
T Consensus 649 ~~~~l~~~Lk~~G~-~~v~-vl~GG~~~~~~~~~l~~aGvD~~i~~g~d~~~~L~~l~~~l 707 (714)
T PRK09426 649 LVPALIEALKKLGR-EDIM-VVVGGVIPPQDYDFLYEAGVAAIFGPGTVIADAAIDLLELL 707 (714)
T ss_pred HHHHHHHHHHhcCC-CCcE-EEEeCCCChhhHHHHHhCCCCEEECCCCCHHHHHHHHHHHH
Confidence 35578888887642 1233 3344432233345677899999999988877754 344444
No 100
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=95.27 E-value=0.92 Score=34.21 Aligned_cols=104 Identities=12% Similarity=0.047 Sum_probs=70.5
Q ss_pred CCHHHHHHHHHHHhhcCCEEEEE---CCHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCCCC--CHHHHHHHHhccCC
Q 026776 37 DSFVDRKVIERLLTISSCKVTAV---DSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGM--TGYELLKKIKDSSA 111 (233)
Q Consensus 37 dd~~~~~~l~~~L~~~g~~v~~a---~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp~~--~g~~ll~~Lr~~~~ 111 (233)
-+..-...+..+|+..||+|... -+.++.++.. ..+.+|+|.+..-|... ..-++.+.|++...
T Consensus 11 ~HdiGkniv~~~L~~~GfeVidLG~~v~~e~~v~aa-----------~~~~adiVglS~L~t~~~~~~~~~~~~l~~~gl 79 (128)
T cd02072 11 CHAVGNKILDHAFTEAGFNVVNLGVLSPQEEFIDAA-----------IETDADAILVSSLYGHGEIDCKGLREKCDEAGL 79 (128)
T ss_pred hhHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHH-----------HHcCCCEEEEeccccCCHHHHHHHHHHHHHCCC
Confidence 34555667888899999999864 3667777776 45689999998766543 23567778877643
Q ss_pred CCCCcEEEEeCCC-----c-HHHHHHHHHcCCceEEeCCCCHHHHHHH
Q 026776 112 LREIPVVIMSSEN-----I-LARIDRCLEDGAEDFIVKPVKLSDVKRI 153 (233)
Q Consensus 112 ~~~~piIvlt~~~-----~-~~~~~~al~~Ga~dyL~KP~~~~eL~~~ 153 (233)
..++++ +.+.. + .+...++.++|++.++...-+++++...
T Consensus 80 -~~v~vi-vGG~~~i~~~d~~~~~~~L~~~Gv~~vf~pgt~~~~i~~~ 125 (128)
T cd02072 80 -KDILLY-VGGNLVVGKQDFEDVEKRFKEMGFDRVFAPGTPPEEAIAD 125 (128)
T ss_pred -CCCeEE-EECCCCCChhhhHHHHHHHHHcCCCEEECcCCCHHHHHHH
Confidence 354444 43331 1 3344668899999999988877776543
No 101
>TIGR03815 CpaE_hom_Actino helicase/secretion neighborhood CpaE-like protein. Members of this protein family belong to the MinD/ParA family of P-loop NTPases, and in particular show homology to the CpaE family of pilus assembly proteins (see PubMed:12370432). Nearly all members are found, not only in a gene context consistent with pilus biogenesis or a pilus-like secretion apparatus, but also near a DEAD/DEAH-box helicase, suggesting an involvement in DNA transfer activity. The model describes a clade restricted to the Actinobacteria.
Probab=95.11 E-value=0.12 Score=45.08 Aligned_cols=65 Identities=22% Similarity=0.092 Sum_probs=44.2
Q ss_pred ccEEEEcCCCCCCCHHHHHHHHhccCCCCCCcEEEEeC-CCcHHHHHHHHHcCCceEEeCCCCHHHHHHHHHHH
Q 026776 85 VDLIITDYCMPGMTGYELLKKIKDSSALREIPVVIMSS-ENILARIDRCLEDGAEDFIVKPVKLSDVKRIKDYL 157 (233)
Q Consensus 85 ~DlvllD~~mp~~~g~~ll~~Lr~~~~~~~~piIvlt~-~~~~~~~~~al~~Ga~dyL~KP~~~~eL~~~~~~l 157 (233)
-.+|++|..+-. .++... .+ ++..++++.. ..+.+....+++.|+.+||.+|++..+|.+.+..+
T Consensus 20 ~~~v~~~~~~~~----~~~~~~---~p-~~~~vv~v~~~~~~~~~~~~a~~~Ga~~~l~~P~~~~~l~~~l~~~ 85 (322)
T TIGR03815 20 APLVLVDADMAE----ACAAAG---LP-RRRRVVLVGGGEPGGALWRAAAAVGAEHVAVLPEAEGWLVELLADL 85 (322)
T ss_pred CCeEEECchhhh----HHHhcc---CC-CCCCEEEEeCCCCCHHHHHHHHHhChhheeeCCCCHHHHHHHHHhh
Confidence 578999864311 112221 12 1334554544 55688899999999999999999999998777665
No 102
>TIGR02370 pyl_corrinoid methyltransferase cognate corrinoid proteins, Methanosarcina family. This model describes a subfamily of the B12 binding domain (pfam02607, pfam02310) proteins. Members of the seed alignment include corrinoid proteins specific to four different, mutally non-homologous enzymes of the genus Methanosarcina. Three of the four cognate enzymes (trimethylamine, dimethylamine, and monomethylamine methyltransferases) all have the unusual, ribosomally incorporated amino acid pyrrolysine at the active site. All act in systems in which a methyl group is transferred to the corrinoid protein to create methylcobalamin, from which the methyl group is later transferred elsewhere.
Probab=94.37 E-value=0.56 Score=38.00 Aligned_cols=92 Identities=9% Similarity=0.091 Sum_probs=60.9
Q ss_pred CCHHHHHHHHHHHhhcCCEEEEEC---CHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCCCC--CHHHHHHHHhccCC
Q 026776 37 DSFVDRKVIERLLTISSCKVTAVD---SGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGM--TGYELLKKIKDSSA 111 (233)
Q Consensus 37 dd~~~~~~l~~~L~~~g~~v~~a~---~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp~~--~g~~ll~~Lr~~~~ 111 (233)
.+..-...+..+|+..||+|.... ..++.++.+ ....||+|.+...|... .-.++++.|++...
T Consensus 96 ~H~lG~~~v~~~l~~~G~~vi~LG~~vp~e~~v~~~-----------~~~~pd~v~lS~~~~~~~~~~~~~i~~l~~~~~ 164 (197)
T TIGR02370 96 VHDIGKNIVVTMLRANGFDVIDLGRDVPIDTVVEKV-----------KKEKPLMLTGSALMTTTMYGQKDINDKLKEEGY 164 (197)
T ss_pred hhHHHHHHHHHHHHhCCcEEEECCCCCCHHHHHHHH-----------HHcCCCEEEEccccccCHHHHHHHHHHHHHcCC
Confidence 445556667778899999998754 556677776 56789999999877643 23567778887643
Q ss_pred CCCCcEEEEeCCCcHHHHHHHHHcCCceEEe
Q 026776 112 LREIPVVIMSSENILARIDRCLEDGAEDFIV 142 (233)
Q Consensus 112 ~~~~piIvlt~~~~~~~~~~al~~Ga~dyL~ 142 (233)
..+++|++ .+...... -+.+.|+|.|-.
T Consensus 165 ~~~v~i~v-GG~~~~~~--~~~~~gad~~~~ 192 (197)
T TIGR02370 165 RDSVKFMV-GGAPVTQD--WADKIGADVYGE 192 (197)
T ss_pred CCCCEEEE-EChhcCHH--HHHHhCCcEEeC
Confidence 23455554 44332222 355779999864
No 103
>cd04728 ThiG Thiazole synthase (ThiG) is the tetrameric enzyme that is involved in the formation of the thiazole moiety of thiamin pyrophosphate, an essential ubiquitous cofactor that plays an important role in carbohydrate and amino acid metabolism. ThiG catalyzes the formation of thiazole from 1-deoxy-D-xylulose 5-phosphate (DXP) and dehydroglycine, with the help of the sulfur carrier protein ThiS that carries the sulfur needed for thiazole assembly on its carboxy terminus (ThiS-COSH).
Probab=93.41 E-value=1.2 Score=37.39 Aligned_cols=96 Identities=17% Similarity=0.193 Sum_probs=63.9
Q ss_pred CCcEEEEEeCCHHHHHHHHHH------HhhcCCEEE--EECCHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCC----
Q 026776 28 EEVHVLAVDDSFVDRKVIERL------LTISSCKVT--AVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMP---- 95 (233)
Q Consensus 28 ~~~~ILIVddd~~~~~~l~~~------L~~~g~~v~--~a~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp---- 95 (233)
.-+|+=|+.|+....--+.+. |-+.||.+. +.+|...+-+.. ...+++| ||
T Consensus 92 ~~iKlEVi~d~~~Llpd~~~tv~aa~~L~~~Gf~vlpyc~dd~~~ar~l~------------~~G~~~v-----mPlg~p 154 (248)
T cd04728 92 DWIKLEVIGDDKTLLPDPIETLKAAEILVKEGFTVLPYCTDDPVLAKRLE------------DAGCAAV-----MPLGSP 154 (248)
T ss_pred CeEEEEEecCccccccCHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHH------------HcCCCEe-----CCCCcC
Confidence 346777777654333222222 334588776 566777776654 2346666 44
Q ss_pred -----CCCHHHHHHHHhccCCCCCCcEEEEeCCCcHHHHHHHHHcCCceEEeC
Q 026776 96 -----GMTGYELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVK 143 (233)
Q Consensus 96 -----~~~g~~ll~~Lr~~~~~~~~piIvlt~~~~~~~~~~al~~Ga~dyL~K 143 (233)
+..-.++++.|++. . .+|||+=.+-...+++.++++.|+++++.-
T Consensus 155 IGsg~Gi~~~~~I~~I~e~-~--~vpVI~egGI~tpeda~~AmelGAdgVlV~ 204 (248)
T cd04728 155 IGSGQGLLNPYNLRIIIER-A--DVPVIVDAGIGTPSDAAQAMELGADAVLLN 204 (248)
T ss_pred CCCCCCCCCHHHHHHHHHh-C--CCcEEEeCCCCCHHHHHHHHHcCCCEEEEC
Confidence 12126788888875 3 789998888889999999999999999764
No 104
>PRK00208 thiG thiazole synthase; Reviewed
Probab=93.16 E-value=1.3 Score=37.10 Aligned_cols=96 Identities=17% Similarity=0.193 Sum_probs=63.7
Q ss_pred CCcEEEEEeCCHHHHHHHHH------HHhhcCCEEE--EECCHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCC----
Q 026776 28 EEVHVLAVDDSFVDRKVIER------LLTISSCKVT--AVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMP---- 95 (233)
Q Consensus 28 ~~~~ILIVddd~~~~~~l~~------~L~~~g~~v~--~a~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp---- 95 (233)
.-+|+=|+.|+....--+.+ .|-+.||.+. +.+|...+-+.. ...+++| ||
T Consensus 92 ~~iKlEVi~d~~~llpd~~~tv~aa~~L~~~Gf~vlpyc~~d~~~ak~l~------------~~G~~~v-----mPlg~p 154 (250)
T PRK00208 92 NWIKLEVIGDDKTLLPDPIETLKAAEILVKEGFVVLPYCTDDPVLAKRLE------------EAGCAAV-----MPLGAP 154 (250)
T ss_pred CeEEEEEecCCCCCCcCHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHH------------HcCCCEe-----CCCCcC
Confidence 34677777765432222222 2334588776 566777776554 2356776 44
Q ss_pred -----CCCHHHHHHHHhccCCCCCCcEEEEeCCCcHHHHHHHHHcCCceEEeC
Q 026776 96 -----GMTGYELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVK 143 (233)
Q Consensus 96 -----~~~g~~ll~~Lr~~~~~~~~piIvlt~~~~~~~~~~al~~Ga~dyL~K 143 (233)
+..-.++++.+++. . .+|||+=.+-...+++.++++.|+++++.-
T Consensus 155 IGsg~gi~~~~~i~~i~e~-~--~vpVIveaGI~tpeda~~AmelGAdgVlV~ 204 (250)
T PRK00208 155 IGSGLGLLNPYNLRIIIEQ-A--DVPVIVDAGIGTPSDAAQAMELGADAVLLN 204 (250)
T ss_pred CCCCCCCCCHHHHHHHHHh-c--CCeEEEeCCCCCHHHHHHHHHcCCCEEEEC
Confidence 12126778888875 3 789998888889999999999999999764
No 105
>COG0512 PabA Anthranilate/para-aminobenzoate synthases component II [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=92.99 E-value=0.41 Score=38.46 Aligned_cols=77 Identities=21% Similarity=0.293 Sum_probs=52.4
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhcCCEEEEECCHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCC--CCCC--HHHHHHH
Q 026776 30 VHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCM--PGMT--GYELLKK 105 (233)
Q Consensus 30 ~~ILIVddd~~~~~~l~~~L~~~g~~v~~a~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~m--p~~~--g~~ll~~ 105 (233)
++||+||+...+--.|.++|++.|+++....+...-+..+ +...||.|++.-.- |... ..+++++
T Consensus 2 ~~IL~IDNyDSFtyNLv~yl~~lg~~v~V~rnd~~~~~~~-----------~~~~pd~iviSPGPG~P~d~G~~~~~i~~ 70 (191)
T COG0512 2 MMILLIDNYDSFTYNLVQYLRELGAEVTVVRNDDISLELI-----------EALKPDAIVISPGPGTPKDAGISLELIRR 70 (191)
T ss_pred ceEEEEECccchHHHHHHHHHHcCCceEEEECCccCHHHH-----------hhcCCCEEEEcCCCCChHHcchHHHHHHH
Confidence 5799999999999999999999998887766553222233 34568999997532 2212 3445555
Q ss_pred HhccCCCCCCcEEEEeC
Q 026776 106 IKDSSALREIPVVIMSS 122 (233)
Q Consensus 106 Lr~~~~~~~~piIvlt~ 122 (233)
+ . .++||+-+.=
T Consensus 71 ~---~--~~~PiLGVCL 82 (191)
T COG0512 71 F---A--GRIPILGVCL 82 (191)
T ss_pred h---c--CCCCEEEECc
Confidence 4 2 2789988864
No 106
>PRK10558 alpha-dehydro-beta-deoxy-D-glucarate aldolase; Provisional
Probab=92.50 E-value=1.8 Score=36.58 Aligned_cols=74 Identities=18% Similarity=0.159 Sum_probs=53.3
Q ss_pred CCcccEEEEcCCCCCCCHHHHHHHHhccCCCCCCcEEEEeCCCcHHHHHHHHHcCCceEEeCCCCHHH-HHHHHHH
Q 026776 82 GLKVDLIITDYCMPGMTGYELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVKLSD-VKRIKDY 156 (233)
Q Consensus 82 ~~~~DlvllD~~mp~~~g~~ll~~Lr~~~~~~~~piIvlt~~~~~~~~~~al~~Ga~dyL~KP~~~~e-L~~~~~~ 156 (233)
...||.|++|++-...+--++...++......-.+++=+ ...+...+.++++.|+++++.--+...+ .+++++.
T Consensus 38 ~~G~D~v~iD~EHg~~~~~~~~~~i~a~~~~g~~~lVRv-p~~~~~~i~r~LD~Ga~giivP~v~tae~a~~~v~a 112 (256)
T PRK10558 38 LAGFDWLVLDGEHAPNDVSTFIPQLMALKGSASAPVVRV-PTNEPVIIKRLLDIGFYNFLIPFVETAEEARRAVAS 112 (256)
T ss_pred hcCCCEEEEccccCCCCHHHHHHHHHHHhhcCCCcEEEC-CCCCHHHHHHHhCCCCCeeeecCcCCHHHHHHHHHH
Confidence 346999999999998888888777776544334455545 4557788899999999999887665444 4444443
No 107
>PRK03958 tRNA 2'-O-methylase; Reviewed
Probab=91.87 E-value=5.4 Score=31.71 Aligned_cols=58 Identities=10% Similarity=0.126 Sum_probs=48.3
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhcC--CEEEEECCHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCCC
Q 026776 30 VHVLAVDDSFVDRKVIERLLTISS--CKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPG 96 (233)
Q Consensus 30 ~~ILIVddd~~~~~~l~~~L~~~g--~~v~~a~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp~ 96 (233)
-+++|+.+++..++.+++++..+| |.|....+.+++++.+.. ....+.++..+....+
T Consensus 32 ~~~yiv~~~~~q~~~v~~I~~~WGg~fnv~~~~s~~~~i~~~k~---------~G~vvhLtmyga~~~~ 91 (176)
T PRK03958 32 DKIILASNDEHVKESVEDIVERWGGPFEVEVTKSWKKEIREWKD---------GGIVVHLTMYGENIQD 91 (176)
T ss_pred ceEEEecCcHHHHHHHHHHHHhcCCceEEEEcCCHHHHHHHHHh---------CCcEEEEEEecCCccc
Confidence 468999999999999999999987 789999999999988852 2346888888887765
No 108
>TIGR03239 GarL 2-dehydro-3-deoxyglucarate aldolase. In E. coli this enzyme (GarL, ) 2-dehydro-3-deoxyglucarate aldolase acts in the catabolism of several sugars including D-galactarate, D-glucarate and L-idarate. In fact, 5-dehydro-4-deoxy-D-glucarate aldolase is a synonym for this enzyme as it is unclear in the literature whether the enzyme acts on only one of these or, as seems likely, has no preference. (Despite the apparent large difference in substrate stucture indicated by their names, 2-DH-3DO- and 5-DH-4DO-glucarate differ only by the chirality of most central hydroxyl-bearing carbon and is alternately named 2-DH-3DO-galactarate.) The reported product of D-galactarate dehydratase (4.2.1.42) is the 5DH-4DO-glucarate isomer and this enzyme is found proximal to the aldolase in many genomes (GenProp0714) where no epimerase is known. Similarly, the product of D-glucarate dehydratase (4.2.1.40) is again the 5-DH-4DO isomer, so the provenance of the 2-DH-3DO-glucarate isomer for which
Probab=91.26 E-value=3.6 Score=34.61 Aligned_cols=73 Identities=18% Similarity=0.139 Sum_probs=53.3
Q ss_pred CcccEEEEcCCCCCCCHHHHHHHHhccCCCCCCcEEEEeCCCcHHHHHHHHHcCCceEEeCCCCHHH-HHHHHHH
Q 026776 83 LKVDLIITDYCMPGMTGYELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVKLSD-VKRIKDY 156 (233)
Q Consensus 83 ~~~DlvllD~~mp~~~g~~ll~~Lr~~~~~~~~piIvlt~~~~~~~~~~al~~Ga~dyL~KP~~~~e-L~~~~~~ 156 (233)
..||.|++|++-...+--++...++......-.+++=+ ...+...+.++++.|+++++.--+...+ .+++++.
T Consensus 32 ~G~D~v~iD~EHg~~~~~~~~~~~~a~~~~g~~~~VRv-p~~~~~~i~r~LD~Ga~gIivP~v~taeea~~~v~a 105 (249)
T TIGR03239 32 AGFDWLLLDGEHAPNDVLTFIPQLMALKGSASAPVVRP-PWNEPVIIKRLLDIGFYNFLIPFVESAEEAERAVAA 105 (249)
T ss_pred cCCCEEEEecccCCCCHHHHHHHHHHHhhcCCCcEEEC-CCCCHHHHHHHhcCCCCEEEecCcCCHHHHHHHHHH
Confidence 45999999999998888888777776544333455555 5567788899999999999887665444 4455443
No 109
>cd02068 radical_SAM_B12_BD B12 binding domain_like associated with radical SAM domain. This domain shows similarity with B12 (adenosylcobamide) binding domains found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase, but it lacks the signature motif Asp-X-His-X-X-Gly, which contains the histidine that acts as a cobalt ligand. The function of this domain remains unclear.
Probab=90.66 E-value=3.4 Score=30.60 Aligned_cols=104 Identities=18% Similarity=0.191 Sum_probs=62.1
Q ss_pred HHHHHHHHHhhcCCEEEEEC--CHHHHHHHhhhhhhhhccCCCC-CcccEEEEcCCCCCC-CHHHHHHHHhccCCCCCCc
Q 026776 41 DRKVIERLLTISSCKVTAVD--SGRRALQFLGLDEEQSINGFDG-LKVDLIITDYCMPGM-TGYELLKKIKDSSALREIP 116 (233)
Q Consensus 41 ~~~~l~~~L~~~g~~v~~a~--~~~~al~~l~~~~~~~~~~~~~-~~~DlvllD~~mp~~-~g~~ll~~Lr~~~~~~~~p 116 (233)
....+..+|++.|+++.... ..++.++.+ .. ..||+|.+.+..... ...++++.+|+..+ +++
T Consensus 4 gl~~~aa~l~~~g~~v~~~~~~~~~~~~~~~-----------~~~~~pdiv~~S~~~~~~~~~~~~~~~ik~~~p--~~~ 70 (127)
T cd02068 4 GLAYLAAVLEDAGFIVAEHDVLSADDIVEDI-----------KELLKPDVVGISLMTSAIYEALELAKIAKEVLP--NVI 70 (127)
T ss_pred hHHHHHHHHHHCCCeeeecCCCCHHHHHHHH-----------HHhcCCCEEEEeeccccHHHHHHHHHHHHHHCC--CCE
Confidence 34567788888888766543 444455555 23 579999998754443 46778899998765 666
Q ss_pred EEEEeCCCcHHHHHHHHHcCCceEEeCCCCHHHHHHHHHHHh
Q 026776 117 VVIMSSENILARIDRCLEDGAEDFIVKPVKLSDVKRIKDYLT 158 (233)
Q Consensus 117 iIvlt~~~~~~~~~~al~~Ga~dyL~KP~~~~eL~~~~~~l~ 158 (233)
|++-..+... .....+.....||+.+--.-.-+..+++.+.
T Consensus 71 iv~GG~~~t~-~p~~~~~~~~~D~vv~GEgE~~~~~l~~~l~ 111 (127)
T cd02068 71 VVVGGPHATF-FPEEILEEPGVDFVVIGEGEETFLKLLEELE 111 (127)
T ss_pred EEECCcchhh-CHHHHhcCCCCCEEEECCcHHHHHHHHHHHH
Confidence 6654444321 2222233334567776544444556665554
No 110
>PRK10128 2-keto-3-deoxy-L-rhamnonate aldolase; Provisional
Probab=90.42 E-value=4.4 Score=34.50 Aligned_cols=73 Identities=16% Similarity=0.209 Sum_probs=53.0
Q ss_pred CcccEEEEcCCCCCCCHHHHHHHHhccCCCCCCcEEEEeCCCcHHHHHHHHHcCCceEEeCCCCHHH-HHHHHHH
Q 026776 83 LKVDLIITDYCMPGMTGYELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVKLSD-VKRIKDY 156 (233)
Q Consensus 83 ~~~DlvllD~~mp~~~g~~ll~~Lr~~~~~~~~piIvlt~~~~~~~~~~al~~Ga~dyL~KP~~~~e-L~~~~~~ 156 (233)
..||.|++|++-...+--++...++........+++-+ ...+...+.+++++|+++.+.--+...+ .+++++.
T Consensus 38 ~GfD~v~iD~EHg~~~~~~l~~~i~a~~~~g~~~lVRv-p~~~~~~i~r~LD~GA~GIivP~V~saeeA~~~V~a 111 (267)
T PRK10128 38 SGYDWLLIDGEHAPNTIQDLYHQLQAIAPYASQPVIRP-VEGSKPLIKQVLDIGAQTLLIPMVDTAEQARQVVSA 111 (267)
T ss_pred cCCCEEEEccccCCCCHHHHHHHHHHHHhcCCCeEEEC-CCCCHHHHHHHhCCCCCeeEecCcCCHHHHHHHHHh
Confidence 35999999999988887777777776554334455544 5567788899999999999997776555 4444443
No 111
>TIGR02311 HpaI 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase. This model represents the aldolase which performs the final step unique to the 4-hydroxyphenylacetic acid catabolism pathway in which 2,4-dihydroxyhept-2-ene-1,7-dioic acid is split into pyruvate and succinate-semialdehyde. The gene for enzyme is generally found adjacent to other genes for this pathway organized into an operon.
Probab=90.12 E-value=3.8 Score=34.43 Aligned_cols=76 Identities=16% Similarity=0.116 Sum_probs=54.0
Q ss_pred CCcccEEEEcCCCCCCCHHHHHHHHhccCCCCCCcEEEEeCCCcHHHHHHHHHcCCceEEeC-CCCHHHHHHHHHHHh
Q 026776 82 GLKVDLIITDYCMPGMTGYELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVK-PVKLSDVKRIKDYLT 158 (233)
Q Consensus 82 ~~~~DlvllD~~mp~~~g~~ll~~Lr~~~~~~~~piIvlt~~~~~~~~~~al~~Ga~dyL~K-P~~~~eL~~~~~~l~ 158 (233)
...+|.|++|++-...+.-++...++........+++=+ ...+...+.++++.|+++++.- --+.++++++++.+.
T Consensus 31 ~~g~D~v~iDlEH~~~~~~~~~~~~~a~~~~g~~~~VRv-~~~~~~~i~~~Ld~Ga~gIivP~v~s~e~a~~~v~~~~ 107 (249)
T TIGR02311 31 GAGFDWLLIDGEHAPNDVRTILSQLQALAPYPSSPVVRP-AIGDPVLIKQLLDIGAQTLLVPMIETAEQAEAAVAATR 107 (249)
T ss_pred hcCCCEEEEeccCCCCCHHHHHHHHHHHHhcCCCcEEEC-CCCCHHHHHHHhCCCCCEEEecCcCCHHHHHHHHHHcC
Confidence 346999999999888888888877776533223444444 4455678899999999999664 455666777766654
No 112
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=90.01 E-value=5.6 Score=28.65 Aligned_cols=37 Identities=16% Similarity=0.316 Sum_probs=29.9
Q ss_pred CcHHHHHHHHHcCCceEEeCCC--CHHHHHHHHHHHhhh
Q 026776 124 NILARIDRCLEDGAEDFIVKPV--KLSDVKRIKDYLTRD 160 (233)
Q Consensus 124 ~~~~~~~~al~~Ga~dyL~KP~--~~~eL~~~~~~l~~~ 160 (233)
...+.+..+++.|..=|+.||+ +.+++.++++...+.
T Consensus 74 ~h~~~~~~~l~~g~~v~~EKP~~~~~~~~~~l~~~a~~~ 112 (120)
T PF01408_consen 74 SHAEIAKKALEAGKHVLVEKPLALTLEEAEELVEAAKEK 112 (120)
T ss_dssp GHHHHHHHHHHTTSEEEEESSSSSSHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHcCCEEEEEcCCcCCHHHHHHHHHHHHHh
Confidence 3467788999999999999998 778888887766553
No 113
>PF07688 KaiA: KaiA domain; InterPro: IPR011648 KaiA is a component of the kaiABC clock protein complex, which constitutes the main circadian regulator in cyanobacteria. The kaiABC complex may act as a promoter-nonspecific transcription regulator that represses transcription, possibly by acting on the state of chromosome compaction. In the complex, KaiA enhances the phosphorylation status of kaiC. In contrast, the presence of kaiB in the complex decreases the phosphorylation status of kaiC, suggesting that kaiB acts by antagonising the interaction between kaiA and kaiC. The activity of KaiA activates kaiBC expression, while KaiC represses it. The overall fold of the KaiA monomer is that of a four-helix bundle, which forms a dimer in the known structure []. KaiA functions as a homodimer. Each monomer is composed of three functional domains: the N-terminal amplitude-amplifier domain, the central period-adjuster domain and the C-termianl clock-oscillator domain. The N-terminal domain of KaiA, from cyanobacteria, acts as a psuedo-receiver domain, but lacks the conserved aspartyl residue required for phosphotransfer in response regulators []. The C-terminal domain is responsible for dimer formation, binding to KaiC, enhancing KaiC phosphorylation and generating the circadian oscillations []. The KaiA protein from Anabaena sp. (strain PCC 7120) lacks the N-terminal CheY-like domain.; GO: 0006468 protein phosphorylation, 0007623 circadian rhythm; PDB: 1V2Z_A 1Q6B_B 1Q6A_A 1SV1_B 1SUY_B 1R5Q_A 1M2E_A 1R8J_B 1M2F_A.
Probab=89.40 E-value=3.2 Score=34.93 Aligned_cols=79 Identities=18% Similarity=0.222 Sum_probs=55.8
Q ss_pred EEEEEeCCHHHHHHHHHHHhhcCCEEEEECCHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCCCCCHHHHHHHHhccC
Q 026776 31 HVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKKIKDSS 110 (233)
Q Consensus 31 ~ILIVddd~~~~~~l~~~L~~~g~~v~~a~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp~~~g~~ll~~Lr~~~ 110 (233)
.|.+.-.++.....+..+|....|.+....++++.++.+.. ..+.+|++|+... ..-..+...|.+.+
T Consensus 2 sI~~~v~s~~Laqsl~~~L~~dRY~l~~~~s~~ef~~~le~---------~~e~iDCLvle~~---~~~~~~~~~L~e~g 69 (283)
T PF07688_consen 2 SICLLVSSPALAQSLRQWLPGDRYELVQVDSPEEFLEFLEQ---------HREQIDCLVLEQS---PLLPPLFNQLYEQG 69 (283)
T ss_dssp EEEEE-S-HHHHHHHHHHT-STTEEEEEESSCHHHHHHHCC---------TTTT-SEEEEETT---STTHHHHHHHHHCT
T ss_pred eEEEEeCCHHHHHHHHHHcccCceEEEEcCcHHHHHHHHHh---------chhccCEEEEecC---CCcHHHHHHHHHcC
Confidence 46666677888899999998888999999999999999953 3457999999754 44566888888876
Q ss_pred CCCCCcEEEEeCC
Q 026776 111 ALREIPVVIMSSE 123 (233)
Q Consensus 111 ~~~~~piIvlt~~ 123 (233)
. -.|+|++...
T Consensus 70 ~--LLPaVil~~~ 80 (283)
T PF07688_consen 70 I--LLPAVILGSS 80 (283)
T ss_dssp ------EEEES--
T ss_pred c--cccEEEEecC
Confidence 5 7899998663
No 114
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=89.10 E-value=2.1 Score=36.25 Aligned_cols=60 Identities=17% Similarity=0.395 Sum_probs=45.5
Q ss_pred CHHHHHHHHhccCCCCCCcEEEEeCC------CcHHHHHHHHHcCCceEEeCCCCHHHHHHHHHHHhh
Q 026776 98 TGYELLKKIKDSSALREIPVVIMSSE------NILARIDRCLEDGAEDFIVKPVKLSDVKRIKDYLTR 159 (233)
Q Consensus 98 ~g~~ll~~Lr~~~~~~~~piIvlt~~------~~~~~~~~al~~Ga~dyL~KP~~~~eL~~~~~~l~~ 159 (233)
+.+++++++|+... ++|+++++-. +.+.....|.++|+++.|.-.+..++.......+.+
T Consensus 75 ~~~~~~~~~r~~~~--~~p~vlm~Y~N~i~~~G~e~f~~~~~~aGvdGviipDLp~ee~~~~~~~~~~ 140 (258)
T PRK13111 75 DVFELVREIREKDP--TIPIVLMTYYNPIFQYGVERFAADAAEAGVDGLIIPDLPPEEAEELRAAAKK 140 (258)
T ss_pred HHHHHHHHHHhcCC--CCCEEEEecccHHhhcCHHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHH
Confidence 45778888885433 7898888744 445668889999999999988888888777766654
No 115
>PRK08385 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=89.04 E-value=8.1 Score=33.13 Aligned_cols=96 Identities=19% Similarity=0.145 Sum_probs=61.0
Q ss_pred EEEEeCCHHHHHHHHHHHhh---cC---CEEEEECCHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCCCCCHHHHHHH
Q 026776 32 VLAVDDSFVDRKVIERLLTI---SS---CKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKK 105 (233)
Q Consensus 32 ILIVddd~~~~~~l~~~L~~---~g---~~v~~a~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp~~~g~~ll~~ 105 (233)
|||-|++..+. .+...++. .. .-.+.+++.+++.+.+. ..+|+|++|- |...+--++.+.
T Consensus 157 vLikdnHi~~~-~i~~av~~~r~~~~~~kIeVEv~~leea~~a~~------------agaDiI~LDn-~~~e~l~~~v~~ 222 (278)
T PRK08385 157 ILIKDNHLALV-PLEEAIRRAKEFSVYKVVEVEVESLEDALKAAK------------AGADIIMLDN-MTPEEIREVIEA 222 (278)
T ss_pred EEEccCHHHHH-HHHHHHHHHHHhCCCCcEEEEeCCHHHHHHHHH------------cCcCEEEECC-CCHHHHHHHHHH
Confidence 78888886555 45555532 21 13345789999998873 3579999994 333334445555
Q ss_pred HhccCCCCCCcEEEEeCCCcHHHHHHHHHcCCceEEe
Q 026776 106 IKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIV 142 (233)
Q Consensus 106 Lr~~~~~~~~piIvlt~~~~~~~~~~al~~Ga~dyL~ 142 (233)
++.... ..-..+..++.-+.+.+.+..+.|+|.+-.
T Consensus 223 l~~~~~-~~~~~leaSGGI~~~ni~~yA~tGvD~Is~ 258 (278)
T PRK08385 223 LKREGL-RERVKIEVSGGITPENIEEYAKLDVDVISL 258 (278)
T ss_pred HHhcCc-CCCEEEEEECCCCHHHHHHHHHcCCCEEEe
Confidence 554331 123456677777888888888999886643
No 116
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=88.25 E-value=7.6 Score=27.84 Aligned_cols=93 Identities=12% Similarity=0.110 Sum_probs=56.6
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhcCCEEEEECC-HHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCCCCCHHHHHHHHhc
Q 026776 30 VHVLAVDDSFVDRKVIERLLTISSCKVTAVDS-GRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKKIKD 108 (233)
Q Consensus 30 ~~ILIVddd~~~~~~l~~~L~~~g~~v~~a~~-~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp~~~g~~ll~~Lr~ 108 (233)
.+|.+||.++...+.+ ...|+.+...+- -.+.++.+ .-.+.+.+++... .+...+.++..+|+
T Consensus 22 ~~vvvid~d~~~~~~~----~~~~~~~i~gd~~~~~~l~~a-----------~i~~a~~vv~~~~-~d~~n~~~~~~~r~ 85 (116)
T PF02254_consen 22 IDVVVIDRDPERVEEL----REEGVEVIYGDATDPEVLERA-----------GIEKADAVVILTD-DDEENLLIALLARE 85 (116)
T ss_dssp SEEEEEESSHHHHHHH----HHTTSEEEES-TTSHHHHHHT-----------TGGCESEEEEESS-SHHHHHHHHHHHHH
T ss_pred CEEEEEECCcHHHHHH----HhcccccccccchhhhHHhhc-----------CccccCEEEEccC-CHHHHHHHHHHHHH
Confidence 6788999887664433 345666655432 23445544 2235788887654 23445667778887
Q ss_pred cCCCCCCcEEEEeCCCcHHHHHHHHHcCCceEEe
Q 026776 109 SSALREIPVVIMSSENILARIDRCLEDGAEDFIV 142 (233)
Q Consensus 109 ~~~~~~~piIvlt~~~~~~~~~~al~~Ga~dyL~ 142 (233)
..+ ..++++..... .....+.++|++..+.
T Consensus 86 ~~~--~~~ii~~~~~~--~~~~~l~~~g~d~vi~ 115 (116)
T PF02254_consen 86 LNP--DIRIIARVNDP--ENAELLRQAGADHVIS 115 (116)
T ss_dssp HTT--TSEEEEEESSH--HHHHHHHHTT-SEEEE
T ss_pred HCC--CCeEEEEECCH--HHHHHHHHCCcCEEEC
Confidence 655 67777776543 4455667789987764
No 117
>COG3836 HpcH 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase [Carbohydrate transport and metabolism]
Probab=87.92 E-value=11 Score=31.49 Aligned_cols=78 Identities=21% Similarity=0.156 Sum_probs=61.7
Q ss_pred CCcccEEEEcCCCCCCCHHHHHHHHhccCCCCCCcEEEEeCCCcHHHHHHHHHcCCceEEeCCCCHHHHHHHHHHHhhh
Q 026776 82 GLKVDLIITDYCMPGMTGYELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVKLSDVKRIKDYLTRD 160 (233)
Q Consensus 82 ~~~~DlvllD~~mp~~~g~~ll~~Lr~~~~~~~~piIvlt~~~~~~~~~~al~~Ga~dyL~KP~~~~eL~~~~~~l~~~ 160 (233)
...||-+++|.+-...|.-.++..|+........|+|-... ++...+.++++.|+..+|.--++..|=.+..-...|+
T Consensus 36 ~aGfDwl~iD~EHapnd~~sl~~qL~a~~~~~~~pvVR~p~-g~~~~Ikq~LD~GAqtlliPmV~s~eqAr~~V~A~rY 113 (255)
T COG3836 36 TAGFDWLLIDGEHAPNDLQSLLHQLQAVAAYASPPVVRPPV-GDPVMIKQLLDIGAQTLLIPMVDTAEQARQAVAATRY 113 (255)
T ss_pred hcCCCEEEecccccCccHHHHHHHHHHhhccCCCCeeeCCC-CCHHHHHHHHccccceeeeeccCCHHHHHHHHHhccC
Confidence 44699999999999999999999999887777888887654 4567889999999999999877766654444444443
No 118
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=87.34 E-value=3.3 Score=34.96 Aligned_cols=60 Identities=22% Similarity=0.439 Sum_probs=45.0
Q ss_pred CHHHHHHHHhccCCCCCCcEEEEeCCCc------HHHHHHHHHcCCceEEeCCCCHHHHHHHHHHHhh
Q 026776 98 TGYELLKKIKDSSALREIPVVIMSSENI------LARIDRCLEDGAEDFIVKPVKLSDVKRIKDYLTR 159 (233)
Q Consensus 98 ~g~~ll~~Lr~~~~~~~~piIvlt~~~~------~~~~~~al~~Ga~dyL~KP~~~~eL~~~~~~l~~ 159 (233)
+.+++++.+|+... .+|+++++-... ......+.++|+++++.-....++....+..+.+
T Consensus 73 ~~~~~v~~ir~~~~--~~plv~m~Y~Npi~~~G~e~f~~~~~~aGvdgviipDlp~ee~~~~~~~~~~ 138 (256)
T TIGR00262 73 KCFELLKKVRQKHP--NIPIGLLTYYNLIFRKGVEEFYAKCKEVGVDGVLVADLPLEESGDLVEAAKK 138 (256)
T ss_pred HHHHHHHHHHhcCC--CCCEEEEEeccHHhhhhHHHHHHHHHHcCCCEEEECCCChHHHHHHHHHHHH
Confidence 45677888886433 678777765543 6778889999999999988888887777766654
No 119
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=87.19 E-value=3.3 Score=33.13 Aligned_cols=72 Identities=21% Similarity=0.139 Sum_probs=45.7
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhcCCE---EEEECCHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCCCCCH-HHHHHH
Q 026776 30 VHVLAVDDSFVDRKVIERLLTISSCK---VTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTG-YELLKK 105 (233)
Q Consensus 30 ~~ILIVddd~~~~~~l~~~L~~~g~~---v~~a~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp~~~g-~~ll~~ 105 (233)
-+|..||-+......+++.++..+.. .....+...++..... ....||+|++|---..... .+++..
T Consensus 66 ~~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~d~~~~l~~~~~---------~~~~fDiIflDPPY~~~~~~~~~l~~ 136 (183)
T PF03602_consen 66 KSVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKGDAFKFLLKLAK---------KGEKFDIIFLDPPYAKGLYYEELLEL 136 (183)
T ss_dssp SEEEEEES-HHHHHHHHHHHHHHT-GGGEEEEESSHHHHHHHHHH---------CTS-EEEEEE--STTSCHHHHHHHHH
T ss_pred CeEEEEECCHHHHHHHHHHHHHhCCCcceeeeccCHHHHHHhhcc---------cCCCceEEEECCCcccchHHHHHHHH
Confidence 57999999999999999999887732 2334566666654421 3467999999953333333 667777
Q ss_pred HhccC
Q 026776 106 IKDSS 110 (233)
Q Consensus 106 Lr~~~ 110 (233)
|.+..
T Consensus 137 l~~~~ 141 (183)
T PF03602_consen 137 LAENN 141 (183)
T ss_dssp HHHTT
T ss_pred HHHCC
Confidence 76543
No 120
>TIGR02026 BchE magnesium-protoporphyrin IX monomethyl ester anaerobic oxidative cyclase. This model respresents the cobalamin-dependent oxidative cyclase responsible for forming the distinctive E-ring of the chlorin ring system under anaerobic conditions. This step is essential in the biosynthesis of both bacteriochlorophyll and chlorophyll under anaerobic conditions (a separate enzyme, AcsF, acts under aerobic conditions). This model identifies two clades of sequences, one from photosynthetic, non-cyanobacterial bacteria and another including Synechocystis and several non-photosynthetic bacteria. The function of the Synechocystis gene is supported by gene clustering with other photosynthetic genes, so the purpose of the gene in the non-photosynthetic bacteria is uncertain. Note that homologs of this gene are not found in plants which rely solely on the aerobic cyclase.
Probab=87.13 E-value=9.7 Score=35.35 Aligned_cols=108 Identities=19% Similarity=0.162 Sum_probs=66.5
Q ss_pred CHHHHHHHHHHHhhcC-CEEEEEC------CHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCCCC-CHHHHHHHHhcc
Q 026776 38 SFVDRKVIERLLTISS-CKVTAVD------SGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGM-TGYELLKKIKDS 109 (233)
Q Consensus 38 d~~~~~~l~~~L~~~g-~~v~~a~------~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp~~-~g~~ll~~Lr~~ 109 (233)
.|.-...+...|+..| ++|...+ +.++..+.+ ....||+|.+...-+.. ...++++.+|+.
T Consensus 21 pPlgl~~lAa~L~~~G~~~V~iiD~~~~~~~~~~~~~~l-----------~~~~pdvVgis~~t~~~~~a~~~~~~~k~~ 89 (497)
T TIGR02026 21 PPLWVAYIGGALLDAGYHDVTFLDAMTGPLTDEKLVERL-----------RAHCPDLVLITAITPAIYIACETLKFARER 89 (497)
T ss_pred CCHHHHHHHHHHHhcCCcceEEecccccCCCHHHHHHHH-----------HhcCcCEEEEecCcccHHHHHHHHHHHHHH
Confidence 4556677888898899 6887764 223333434 34579999997655543 355778888876
Q ss_pred CCCCCCcEEEEeCCCcHHHHHHHHH-cCCceEEeCCCCHHHHHHHHHHHhh
Q 026776 110 SALREIPVVIMSSENILARIDRCLE-DGAEDFIVKPVKLSDVKRIKDYLTR 159 (233)
Q Consensus 110 ~~~~~~piIvlt~~~~~~~~~~al~-~Ga~dyL~KP~~~~eL~~~~~~l~~ 159 (233)
.+ +++||+-..+... ...+++. ....||+..--.-..+.++++.+..
T Consensus 90 ~P--~~~iV~GG~h~t~-~~~~~l~~~p~vD~Vv~GEGE~~~~~Ll~~l~~ 137 (497)
T TIGR02026 90 LP--NAIIVLGGIHPTF-MFHQVLTEAPWIDFIVRGEGEETVVKLIAALEN 137 (497)
T ss_pred CC--CCEEEEcCCCcCc-CHHHHHhcCCCccEEEeCCcHHHHHHHHHHHHc
Confidence 55 6666654444332 2234453 3445787777665556667666543
No 121
>KOG4175 consensus Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=85.83 E-value=3.9 Score=33.29 Aligned_cols=57 Identities=16% Similarity=0.348 Sum_probs=41.8
Q ss_pred HHHHHHhccCCCCCCcEEEEeCC------CcHHHHHHHHHcCCceEEeCCCCHHHHHHHHHHHhh
Q 026776 101 ELLKKIKDSSALREIPVVIMSSE------NILARIDRCLEDGAEDFIVKPVKLSDVKRIKDYLTR 159 (233)
Q Consensus 101 ~ll~~Lr~~~~~~~~piIvlt~~------~~~~~~~~al~~Ga~dyL~KP~~~~eL~~~~~~l~~ 159 (233)
+++++.|... -.+|||+++-+ +.+.++..+.++|+++||.-.+.++|-..+.+....
T Consensus 84 emvk~ar~~g--vt~PIiLmgYYNPIl~yG~e~~iq~ak~aGanGfiivDlPpEEa~~~Rne~~k 146 (268)
T KOG4175|consen 84 EMVKEARPQG--VTCPIILMGYYNPILRYGVENYIQVAKNAGANGFIIVDLPPEEAETLRNEARK 146 (268)
T ss_pred HHHHHhcccC--cccceeeeecccHHHhhhHHHHHHHHHhcCCCceEeccCChHHHHHHHHHHHh
Confidence 3444444333 37899998754 466788889999999999999999997766665544
No 122
>COG2022 ThiG Uncharacterized enzyme of thiazole biosynthesis [Nucleotide transport and metabolism]
Probab=85.75 E-value=7.3 Score=32.46 Aligned_cols=101 Identities=13% Similarity=0.121 Sum_probs=64.9
Q ss_pred CCcEEEEEeCCHH----HHH--HHHHHHhhcCCEEEEECCHH--HHHHHhhhhhhhhccCCCCCcccEEEEcCCCCCCCH
Q 026776 28 EEVHVLAVDDSFV----DRK--VIERLLTISSCKVTAVDSGR--RALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTG 99 (233)
Q Consensus 28 ~~~~ILIVddd~~----~~~--~l~~~L~~~g~~v~~a~~~~--~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp~~~g 99 (233)
.=+|+=|+.|+.. ..+ .-.+.|-+.||.|..+.+.+ -+-++. ... -..+|=+.-|-.+|
T Consensus 99 ~wiKlEVi~d~~tLlPD~~etl~Aae~Lv~eGF~VlPY~~dD~v~arrLe------------e~G-caavMPl~aPIGSg 165 (262)
T COG2022 99 NWIKLEVIGDEKTLLPDPIETLKAAEQLVKEGFVVLPYTTDDPVLARRLE------------EAG-CAAVMPLGAPIGSG 165 (262)
T ss_pred CeEEEEEecCCcccCCChHHHHHHHHHHHhCCCEEeeccCCCHHHHHHHH------------hcC-ceEeccccccccCC
Confidence 3466666666432 122 23445677899887654333 332222 111 23556666664443
Q ss_pred -----HHHHHHHhccCCCCCCcEEEEeCCCcHHHHHHHHHcCCceEEeCC
Q 026776 100 -----YELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKP 144 (233)
Q Consensus 100 -----~~ll~~Lr~~~~~~~~piIvlt~~~~~~~~~~al~~Ga~dyL~KP 144 (233)
-..++.|++.. ++|+|+=.+-+...++..+++.|+|++|...
T Consensus 166 ~G~~n~~~l~iiie~a---~VPviVDAGiG~pSdAa~aMElG~DaVL~NT 212 (262)
T COG2022 166 LGLQNPYNLEIIIEEA---DVPVIVDAGIGTPSDAAQAMELGADAVLLNT 212 (262)
T ss_pred cCcCCHHHHHHHHHhC---CCCEEEeCCCCChhHHHHHHhcccceeehhh
Confidence 35677777653 8999999999999999999999999999764
No 123
>TIGR01334 modD putative molybdenum utilization protein ModD. The gene modD for a member of this family is found with molybdenum transport genes modABC in Rhodobacter capsulatus. However, disruption of modD causes only a 4-fold (rather than 500-fold for modA, modB, modC) change in the external molybdenum concentration required to suppress an alternative nitrogenase. ModD proteins are highly similar to nicotinate-nucleotide pyrophosphorylase (also called quinolinate phosphoribosyltransferase). The function unknown.
Probab=85.75 E-value=6.3 Score=33.75 Aligned_cols=70 Identities=21% Similarity=0.227 Sum_probs=49.0
Q ss_pred EEEECCHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCCCCCHHHHHHHHhccCCCCCCcEEEEeCCCcHHHHHHHHHc
Q 026776 56 VTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKKIKDSSALREIPVVIMSSENILARIDRCLED 135 (233)
Q Consensus 56 v~~a~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp~~~g~~ll~~Lr~~~~~~~~piIvlt~~~~~~~~~~al~~ 135 (233)
.+.+.+.+++.+.+. ..+|+|++| +|+..+-.++++.+++.. .-.++..++.-+.+.+.+....
T Consensus 192 eVEv~tleea~ea~~------------~GaDiI~lD-n~~~e~l~~~v~~l~~~~---~~~~leasGGI~~~ni~~ya~~ 255 (277)
T TIGR01334 192 TVEADTIEQALTVLQ------------ASPDILQLD-KFTPQQLHHLHERLKFFD---HIPTLAAAGGINPENIADYIEA 255 (277)
T ss_pred EEECCCHHHHHHHHH------------cCcCEEEEC-CCCHHHHHHHHHHHhccC---CCEEEEEECCCCHHHHHHHHhc
Confidence 345779999998872 358999999 555555556666665432 2335667777788888888899
Q ss_pred CCceEE
Q 026776 136 GAEDFI 141 (233)
Q Consensus 136 Ga~dyL 141 (233)
|+|-+.
T Consensus 256 GvD~is 261 (277)
T TIGR01334 256 GIDLFI 261 (277)
T ss_pred CCCEEE
Confidence 987653
No 124
>PRK07896 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=85.70 E-value=4.5 Score=34.84 Aligned_cols=94 Identities=16% Similarity=0.134 Sum_probs=57.2
Q ss_pred EEEEeCCHHHHHHHHHHH----hhcC--CEEEEECCHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCCCCCHHHHHHH
Q 026776 32 VLAVDDSFVDRKVIERLL----TISS--CKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKK 105 (233)
Q Consensus 32 ILIVddd~~~~~~l~~~L----~~~g--~~v~~a~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp~~~g~~ll~~ 105 (233)
|||=|++-...-.+...+ +..+ ...+.+++.+++.+.+. ...|+|++| +|.-.+--++++.
T Consensus 173 ilIkdNHi~~~G~i~~ai~~~r~~~~~~kIeVEv~tl~ea~eal~------------~gaDiI~LD-nm~~e~vk~av~~ 239 (289)
T PRK07896 173 ALIKDNHVAAAGSVVAALRAVRAAAPDLPCEVEVDSLEQLDEVLA------------EGAELVLLD-NFPVWQTQEAVQR 239 (289)
T ss_pred eeecHHHHHHhCcHHHHHHHHHHhCCCCCEEEEcCCHHHHHHHHH------------cCCCEEEeC-CCCHHHHHHHHHH
Confidence 666666543332233333 2222 24456789999998872 358999999 4543333444444
Q ss_pred HhccCCCCCCcEEEEeCCCcHHHHHHHHHcCCceEE
Q 026776 106 IKDSSALREIPVVIMSSENILARIDRCLEDGAEDFI 141 (233)
Q Consensus 106 Lr~~~~~~~~piIvlt~~~~~~~~~~al~~Ga~dyL 141 (233)
++... .-..+..++.-+.+.+.+..+.|+|.+-
T Consensus 240 ~~~~~---~~v~ieaSGGI~~~ni~~yA~tGvD~Is 272 (289)
T PRK07896 240 RDARA---PTVLLESSGGLTLDTAAAYAETGVDYLA 272 (289)
T ss_pred HhccC---CCEEEEEECCCCHHHHHHHHhcCCCEEE
Confidence 44433 2235667777788888888899988654
No 125
>PF05690 ThiG: Thiazole biosynthesis protein ThiG; InterPro: IPR008867 This family consists of several bacterial thiazole biosynthesis protein G sequences. ThiG, together with ThiF and ThiH, is proposed to be involved in the synthesis of 4-methyl-5-(b-hydroxyethyl)thiazole (THZ) which is an intermediate in the thiazole production pathway [].; GO: 0009228 thiamine biosynthetic process; PDB: 1WV2_B 1TYG_C 1XM3_B 2HTM_C 2YZR_C.
Probab=85.70 E-value=4.6 Score=33.66 Aligned_cols=100 Identities=14% Similarity=0.140 Sum_probs=57.5
Q ss_pred CCcEEEEEeCCHH----HHHHH--HHHHhhcCCEEEEEC--CHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCCCCCH
Q 026776 28 EEVHVLAVDDSFV----DRKVI--ERLLTISSCKVTAVD--SGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTG 99 (233)
Q Consensus 28 ~~~~ILIVddd~~----~~~~l--~~~L~~~g~~v~~a~--~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp~~~g 99 (233)
.-+|+=|+.|+.. ..+.+ .+.|.+.||.|..+. |.--+-++... . -.+++=+.-|-.+|
T Consensus 92 ~wIKLEVi~D~~~L~PD~~etl~Aae~Lv~eGF~VlPY~~~D~v~akrL~d~------------G-caavMPlgsPIGSg 158 (247)
T PF05690_consen 92 NWIKLEVIGDDKTLLPDPIETLKAAEILVKEGFVVLPYCTDDPVLAKRLEDA------------G-CAAVMPLGSPIGSG 158 (247)
T ss_dssp SEEEE--BS-TTT--B-HHHHHHHHHHHHHTT-EEEEEE-S-HHHHHHHHHT------------T--SEBEEBSSSTTT-
T ss_pred CeEEEEEeCCCCCcCCChhHHHHHHHHHHHCCCEEeecCCCCHHHHHHHHHC------------C-CCEEEecccccccC
Confidence 3466767766542 23332 345668899887643 44444333311 1 12455556664443
Q ss_pred -----HHHHHHHhccCCCCCCcEEEEeCCCcHHHHHHHHHcCCceEEeC
Q 026776 100 -----YELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVK 143 (233)
Q Consensus 100 -----~~ll~~Lr~~~~~~~~piIvlt~~~~~~~~~~al~~Ga~dyL~K 143 (233)
-..++.|++.. ++|+|+=.+-+...++.++++.|+|++|..
T Consensus 159 ~Gi~n~~~l~~i~~~~---~vPvIvDAGiG~pSdaa~AMElG~daVLvN 204 (247)
T PF05690_consen 159 RGIQNPYNLRIIIERA---DVPVIVDAGIGTPSDAAQAMELGADAVLVN 204 (247)
T ss_dssp --SSTHHHHHHHHHHG---SSSBEEES---SHHHHHHHHHTT-SEEEES
T ss_pred cCCCCHHHHHHHHHhc---CCcEEEeCCCCCHHHHHHHHHcCCceeehh
Confidence 35677887654 899999999899999999999999999975
No 126
>PRK05749 3-deoxy-D-manno-octulosonic-acid transferase; Reviewed
Probab=85.17 E-value=14 Score=33.16 Aligned_cols=67 Identities=15% Similarity=0.123 Sum_probs=34.4
Q ss_pred ccEEEEcCCCCCCCHHHHHHHHhccCCCCCCcEEEEeCCCcHHHHHHHHHcCCceEEeCCCCHHHHHHHHHHHh
Q 026776 85 VDLIITDYCMPGMTGYELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVKLSDVKRIKDYLT 158 (233)
Q Consensus 85 ~DlvllD~~mp~~~g~~ll~~Lr~~~~~~~~piIvlt~~~~~~~~~~al~~Ga~dyL~KP~~~~eL~~~~~~l~ 158 (233)
.|++++--......|..+++.+.. .+|+|+-.......+..+.+.. .+++..+-+.++|...+..+.
T Consensus 320 aDi~~v~~S~~e~~g~~~lEAma~-----G~PVI~g~~~~~~~e~~~~~~~--~g~~~~~~d~~~La~~l~~ll 386 (425)
T PRK05749 320 ADIAFVGGSLVKRGGHNPLEPAAF-----GVPVISGPHTFNFKEIFERLLQ--AGAAIQVEDAEDLAKAVTYLL 386 (425)
T ss_pred CCEEEECCCcCCCCCCCHHHHHHh-----CCCEEECCCccCHHHHHHHHHH--CCCeEEECCHHHHHHHHHHHh
Confidence 466555322212234445555432 6788753222333333333321 246667888888877766554
No 127
>PF01729 QRPTase_C: Quinolinate phosphoribosyl transferase, C-terminal domain; InterPro: IPR002638 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2.4.2.19 from EC is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide [, ]. Unlike IPR004393 from INTERPRO, this domain also includes the molybdenum transport system protein ModD.; GO: 0004514 nicotinate-nucleotide diphosphorylase (carboxylating) activity, 0009435 NAD biosynthetic process; PDB: 3C2O_A 3C2F_A 3C2E_A 3C2R_A 3C2V_A 1QPN_E 1QPO_A 1QPQ_F 1QPR_E 2I14_D ....
Probab=84.79 E-value=5.4 Score=31.54 Aligned_cols=94 Identities=17% Similarity=0.150 Sum_probs=57.0
Q ss_pred EEEEeCCHHHHHHHHHHHh----hcC--C-EEEEECCHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCCCCCHHHHHH
Q 026776 32 VLAVDDSFVDRKVIERLLT----ISS--C-KVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLK 104 (233)
Q Consensus 32 ILIVddd~~~~~~l~~~L~----~~g--~-~v~~a~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp~~~g~~ll~ 104 (233)
|||-|.+-.....+.+.++ ..+ . -...+++.+++.+.+. ..+|+|.+|-.-| .+--++++
T Consensus 53 ili~~nHi~~~g~i~~av~~~~~~~~~~~~I~VEv~~~ee~~ea~~------------~g~d~I~lD~~~~-~~~~~~v~ 119 (169)
T PF01729_consen 53 ILIKDNHIAFFGGIEEAVKAARQAAPEKKKIEVEVENLEEAEEALE------------AGADIIMLDNMSP-EDLKEAVE 119 (169)
T ss_dssp EEE-HHHHHHHSSHHHHHHHHHHHSTTTSEEEEEESSHHHHHHHHH------------TT-SEEEEES-CH-HHHHHHHH
T ss_pred EEehHHHHHHhCCHHHHHHHHHHhCCCCceEEEEcCCHHHHHHHHH------------hCCCEEEecCcCH-HHHHHHHH
Confidence 5666655554433444332 222 2 3345788999988873 3589999995433 34445566
Q ss_pred HHhccCCCCCCcEEEEeCCCcHHHHHHHHHcCCceEE
Q 026776 105 KIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFI 141 (233)
Q Consensus 105 ~Lr~~~~~~~~piIvlt~~~~~~~~~~al~~Ga~dyL 141 (233)
.++.... + ..|.+++.-+.+.+.+..+.|+|.+-
T Consensus 120 ~l~~~~~--~-v~ie~SGGI~~~ni~~ya~~gvD~is 153 (169)
T PF01729_consen 120 ELRELNP--R-VKIEASGGITLENIAEYAKTGVDVIS 153 (169)
T ss_dssp HHHHHTT--T-SEEEEESSSSTTTHHHHHHTT-SEEE
T ss_pred HHhhcCC--c-EEEEEECCCCHHHHHHHHhcCCCEEE
Confidence 6655543 3 67777887788888888899987664
No 128
>PLN02591 tryptophan synthase
Probab=84.54 E-value=5.6 Score=33.54 Aligned_cols=59 Identities=17% Similarity=0.309 Sum_probs=45.1
Q ss_pred CHHHHHHHHhccCCCCCCcEEEEeCCC------cHHHHHHHHHcCCceEEeCCCCHHHHHHHHHHHhh
Q 026776 98 TGYELLKKIKDSSALREIPVVIMSSEN------ILARIDRCLEDGAEDFIVKPVKLSDVKRIKDYLTR 159 (233)
Q Consensus 98 ~g~~ll~~Lr~~~~~~~~piIvlt~~~------~~~~~~~al~~Ga~dyL~KP~~~~eL~~~~~~l~~ 159 (233)
+.+++++++|+. . ++|+|+++-.+ ......+|.++|++++|.-.+..+|.......+.+
T Consensus 65 ~~~~~~~~~r~~-~--~~p~ilm~Y~N~i~~~G~~~F~~~~~~aGv~GviipDLP~ee~~~~~~~~~~ 129 (250)
T PLN02591 65 SVISMLKEVAPQ-L--SCPIVLFTYYNPILKRGIDKFMATIKEAGVHGLVVPDLPLEETEALRAEAAK 129 (250)
T ss_pred HHHHHHHHHhcC-C--CCCEEEEecccHHHHhHHHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHH
Confidence 467888888843 3 78988777543 34567888899999999999999888777776654
No 129
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional
Probab=84.51 E-value=17 Score=29.70 Aligned_cols=85 Identities=20% Similarity=0.234 Sum_probs=55.1
Q ss_pred HHHHHHhh-cCCEEE-EECCHHHHHHHhhhhhhhhccCCCCCcccEEEEcCC-------CCCCCHHHHHHHHhccCCCCC
Q 026776 44 VIERLLTI-SSCKVT-AVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYC-------MPGMTGYELLKKIKDSSALRE 114 (233)
Q Consensus 44 ~l~~~L~~-~g~~v~-~a~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~-------mp~~~g~~ll~~Lr~~~~~~~ 114 (233)
.+.+.+++ .+..+. .+.+.+++.... ...+|++.+... .....++++++++++.. .
T Consensus 109 ~~i~~~~~~~~i~vi~~v~t~ee~~~a~------------~~G~d~i~~~~~g~t~~~~~~~~~~~~~i~~i~~~~---~ 173 (221)
T PRK01130 109 ELVKRIKEYPGQLLMADCSTLEEGLAAQ------------KLGFDFIGTTLSGYTEETKKPEEPDFALLKELLKAV---G 173 (221)
T ss_pred HHHHHHHhCCCCeEEEeCCCHHHHHHHH------------HcCCCEEEcCCceeecCCCCCCCcCHHHHHHHHHhC---C
Confidence 33444455 555443 355677765443 234787765321 11233578888888753 6
Q ss_pred CcEEEEeCCCcHHHHHHHHHcCCceEEeC
Q 026776 115 IPVVIMSSENILARIDRCLEDGAEDFIVK 143 (233)
Q Consensus 115 ~piIvlt~~~~~~~~~~al~~Ga~dyL~K 143 (233)
+|++...+-.+.+.+.++++.|++.++.=
T Consensus 174 iPvia~GGI~t~~~~~~~l~~GadgV~iG 202 (221)
T PRK01130 174 CPVIAEGRINTPEQAKKALELGAHAVVVG 202 (221)
T ss_pred CCEEEECCCCCHHHHHHHHHCCCCEEEEc
Confidence 89988877778889999999999998764
No 130
>cd04724 Tryptophan_synthase_alpha Ttryptophan synthase (TRPS) alpha subunit (TSA). TPRS is a bifunctional tetrameric enzyme (2 alpha and 2 beta subunits) that catalyzes the last two steps of L-tryptophan biosynthesis. Alpha and beta subunit catalyze two distinct reactions which are both strongly stimulated by the formation of the complex. The alpha subunit catalyzes the cleavage of indole 3-glycerol phosphate (IGP) to indole and d-glyceraldehyde 3-phosphate (G3P). Indole is then channeled to the active site of the beta subunit, a PLP-dependent enzyme that catalyzes a replacement reaction to convert L-serine into L-tryptophan.
Probab=84.48 E-value=6.4 Score=32.86 Aligned_cols=59 Identities=20% Similarity=0.384 Sum_probs=43.0
Q ss_pred CHHHHHHHHhccCCCCCCcEEEEeCCC------cHHHHHHHHHcCCceEEeCCCCHHHHHHHHHHHhh
Q 026776 98 TGYELLKKIKDSSALREIPVVIMSSEN------ILARIDRCLEDGAEDFIVKPVKLSDVKRIKDYLTR 159 (233)
Q Consensus 98 ~g~~ll~~Lr~~~~~~~~piIvlt~~~------~~~~~~~al~~Ga~dyL~KP~~~~eL~~~~~~l~~ 159 (233)
.++++++.+|+.. ++|+++++-.. .......+.++|+++++.-.+..+++.++++.+.+
T Consensus 63 ~~~~~~~~vr~~~---~~pv~lm~y~n~~~~~G~~~fi~~~~~aG~~giiipDl~~ee~~~~~~~~~~ 127 (242)
T cd04724 63 DVLELVKEIRKKN---TIPIVLMGYYNPILQYGLERFLRDAKEAGVDGLIIPDLPPEEAEEFREAAKE 127 (242)
T ss_pred HHHHHHHHHhhcC---CCCEEEEEecCHHHHhCHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHH
Confidence 4677788887642 67877766533 25667888999999999977777777777766655
No 131
>TIGR00566 trpG_papA glutamine amidotransferase of anthranilate synthase or aminodeoxychorismate synthase. This model describes the glutamine amidotransferase domain or peptide of the tryptophan-biosynthetic pathway enzyme anthranilate synthase or of the folate biosynthetic pathway enzyme para-aminobenzoate synthase. In at least one case, a single polypeptide from Bacillus subtilis was shown to have both functions. This model covers a subset of the sequences described by the pfam model GATase.
Probab=84.48 E-value=2.8 Score=33.51 Aligned_cols=76 Identities=18% Similarity=0.199 Sum_probs=45.9
Q ss_pred EEEEeCCHHHHHHHHHHHhhcCCEEEEECCHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCC---CCCHHHHHHHHhc
Q 026776 32 VLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMP---GMTGYELLKKIKD 108 (233)
Q Consensus 32 ILIVddd~~~~~~l~~~L~~~g~~v~~a~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp---~~~g~~ll~~Lr~ 108 (233)
|||||....+-..+.++|+..|+.+....+....++.+ ....||.||+- .=| ..++.+ .+.++.
T Consensus 2 il~id~~dsft~~~~~~l~~~g~~v~v~~~~~~~~~~~-----------~~~~~d~iils-gGpg~p~~~~~~-~~~i~~ 68 (188)
T TIGR00566 2 VLMIDNYDSFTYNLVQYFCELGAEVVVKRNDSLTLQEI-----------EALLPLLIVIS-PGPCTPNEAGIS-LEAIRH 68 (188)
T ss_pred EEEEECCcCHHHHHHHHHHHcCCceEEEECCCCCHHHH-----------HhcCCCEEEEc-CCCCChhhcchh-HHHHHH
Confidence 89999999899999999999998887765332222222 22358866662 222 112221 333333
Q ss_pred cCCCCCCcEEEEeC
Q 026776 109 SSALREIPVVIMSS 122 (233)
Q Consensus 109 ~~~~~~~piIvlt~ 122 (233)
.. .++||+.+.-
T Consensus 69 ~~--~~~PvLGIC~ 80 (188)
T TIGR00566 69 FA--GKLPILGVCL 80 (188)
T ss_pred hc--cCCCEEEECH
Confidence 22 2789988863
No 132
>PRK00043 thiE thiamine-phosphate pyrophosphorylase; Reviewed
Probab=84.47 E-value=14 Score=29.53 Aligned_cols=57 Identities=25% Similarity=0.364 Sum_probs=42.1
Q ss_pred CcccEEEEcCCCCCC--------CHHHHHHHHhccCCCCCCcEEEEeCCCcHHHHHHHHHcCCceEEe
Q 026776 83 LKVDLIITDYCMPGM--------TGYELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIV 142 (233)
Q Consensus 83 ~~~DlvllD~~mp~~--------~g~~ll~~Lr~~~~~~~~piIvlt~~~~~~~~~~al~~Ga~dyL~ 142 (233)
..+|.|.+.--.|.. .|++.++++++... .+||++..+- +.+.+.++++.|++++..
T Consensus 123 ~gaD~v~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~--~~~v~a~GGI-~~~~i~~~~~~Ga~gv~~ 187 (212)
T PRK00043 123 AGADYVGVGPIFPTPTKKDAKAPQGLEGLREIRAAVG--DIPIVAIGGI-TPENAPEVLEAGADGVAV 187 (212)
T ss_pred cCCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHhcC--CCCEEEECCc-CHHHHHHHHHcCCCEEEE
Confidence 357999887555432 35889999987543 5888877655 567788999999999975
No 133
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=84.04 E-value=13 Score=35.53 Aligned_cols=111 Identities=14% Similarity=0.196 Sum_probs=63.2
Q ss_pred CcEEEEEeCCHHHHHHHHHHHhhcCCEEEEECCHHHHHHHhhhhhhh----------hccCCCCCcccEEEEcCCCCCCC
Q 026776 29 EVHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQ----------SINGFDGLKVDLIITDYCMPGMT 98 (233)
Q Consensus 29 ~~~ILIVddd~~~~~~l~~~L~~~g~~v~~a~~~~~al~~l~~~~~~----------~~~~~~~~~~DlvllD~~mp~~~ 98 (233)
+.+|+|+.-...-+ .+.+.|.+.|+.+...+...+..+.++..+.. ......-.+.|++++-.+-+ .+
T Consensus 400 ~~~vII~G~Gr~G~-~va~~L~~~g~~vvvID~d~~~v~~~~~~g~~v~~GDat~~~~L~~agi~~A~~vv~~~~d~-~~ 477 (601)
T PRK03659 400 KPQVIIVGFGRFGQ-VIGRLLMANKMRITVLERDISAVNLMRKYGYKVYYGDATQLELLRAAGAEKAEAIVITCNEP-ED 477 (601)
T ss_pred cCCEEEecCchHHH-HHHHHHHhCCCCEEEEECCHHHHHHHHhCCCeEEEeeCCCHHHHHhcCCccCCEEEEEeCCH-HH
Confidence 45677777665443 45556666777776666555555544321110 00001123456666644322 33
Q ss_pred HHHHHHHHhccCCCCCCcEEEEeCCCcHHHHHHHHHcCCceEEeCCC
Q 026776 99 GYELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPV 145 (233)
Q Consensus 99 g~~ll~~Lr~~~~~~~~piIvlt~~~~~~~~~~al~~Ga~dyL~KP~ 145 (233)
...++..+|+..+ +.+|++-+.+ .+......++|++.++.--+
T Consensus 478 n~~i~~~~r~~~p--~~~IiaRa~~--~~~~~~L~~~Ga~~vv~e~~ 520 (601)
T PRK03659 478 TMKIVELCQQHFP--HLHILARARG--RVEAHELLQAGVTQFSRETF 520 (601)
T ss_pred HHHHHHHHHHHCC--CCeEEEEeCC--HHHHHHHHhCCCCEEEccHH
Confidence 4567777887655 7788776644 45666788999998875533
No 134
>PLN02335 anthranilate synthase
Probab=84.04 E-value=4.1 Score=33.62 Aligned_cols=82 Identities=9% Similarity=0.096 Sum_probs=48.0
Q ss_pred CCCCcEEEEEeCCHHHHHHHHHHHhhcCCEEEEECCHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCC--CCCCHHHHH
Q 026776 26 DTEEVHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCM--PGMTGYELL 103 (233)
Q Consensus 26 ~~~~~~ILIVddd~~~~~~l~~~L~~~g~~v~~a~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~m--p~~~g~~ll 103 (233)
+++..+|||||...-+...+.+.|+..|+.+..+.....-++.+ ....||.||+--.- |...| ...
T Consensus 15 ~~~~~~ilviD~~dsft~~i~~~L~~~g~~~~v~~~~~~~~~~~-----------~~~~~d~iVisgGPg~p~d~~-~~~ 82 (222)
T PLN02335 15 SKQNGPIIVIDNYDSFTYNLCQYMGELGCHFEVYRNDELTVEEL-----------KRKNPRGVLISPGPGTPQDSG-ISL 82 (222)
T ss_pred cCccCcEEEEECCCCHHHHHHHHHHHCCCcEEEEECCCCCHHHH-----------HhcCCCEEEEcCCCCChhhcc-chH
Confidence 34557899999766677788899999998777665421112222 12357777764321 11112 234
Q ss_pred HHHhccCCCCCCcEEEEe
Q 026776 104 KKIKDSSALREIPVVIMS 121 (233)
Q Consensus 104 ~~Lr~~~~~~~~piIvlt 121 (233)
+.++.... ..||+.+.
T Consensus 83 ~~~~~~~~--~~PiLGIC 98 (222)
T PLN02335 83 QTVLELGP--LVPLFGVC 98 (222)
T ss_pred HHHHHhCC--CCCEEEec
Confidence 55554332 78988775
No 135
>PRK06543 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=83.79 E-value=14 Score=31.79 Aligned_cols=91 Identities=18% Similarity=0.113 Sum_probs=57.2
Q ss_pred EEEEEeCCHHHH--H--HHHHHH----hhcCC---EEEEECCHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCCCCCH
Q 026776 31 HVLAVDDSFVDR--K--VIERLL----TISSC---KVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTG 99 (233)
Q Consensus 31 ~ILIVddd~~~~--~--~l~~~L----~~~g~---~v~~a~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp~~~g 99 (233)
.|||-|++-.+. . .+...+ +..++ -.+.+++.+++.+.+. ..+|+|++| +|.-.+-
T Consensus 161 ~vLikdNHi~~~~~g~~~i~~av~~~r~~~~~~~kIeVEv~slee~~ea~~------------~gaDiImLD-n~s~e~l 227 (281)
T PRK06543 161 AVMAKDNHLAALAAQGLDLTEALRHVRAQLGHTTHVEVEVDRLDQIEPVLA------------AGVDTIMLD-NFSLDDL 227 (281)
T ss_pred eEEEeHHHHHHHhCCchHHHHHHHHHHHhCCCCCcEEEEeCCHHHHHHHHh------------cCCCEEEEC-CCCHHHH
Confidence 377777776542 1 233333 33342 3356889999998872 358999999 3433333
Q ss_pred HHHHHHHhccCCCCCCcEEEEeCCCcHHHHHHHHHcCCceE
Q 026776 100 YELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDF 140 (233)
Q Consensus 100 ~~ll~~Lr~~~~~~~~piIvlt~~~~~~~~~~al~~Ga~dy 140 (233)
-+++..++. ..++-.++.-+.+.+.+....|+|-.
T Consensus 228 ~~av~~~~~------~~~leaSGgI~~~ni~~yA~tGVD~I 262 (281)
T PRK06543 228 REGVELVDG------RAIVEASGNVNLNTVGAIASTGVDVI 262 (281)
T ss_pred HHHHHHhCC------CeEEEEECCCCHHHHHHHHhcCCCEE
Confidence 344444432 23677788878888888888998754
No 136
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=83.05 E-value=14 Score=26.04 Aligned_cols=87 Identities=21% Similarity=0.208 Sum_probs=50.9
Q ss_pred EEEEEeCCHHHHHHHHHHHhhcCCEEEEE------CCHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCCCCCHHHHHH
Q 026776 31 HVLAVDDSFVDRKVIERLLTISSCKVTAV------DSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLK 104 (233)
Q Consensus 31 ~ILIVddd~~~~~~l~~~L~~~g~~v~~a------~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp~~~g~~ll~ 104 (233)
+||||.........++..+++.|+..... ......+... -...|+||+=.+. -+-.+..
T Consensus 1 ~vliVGG~~~~~~~~~~~~~~~G~~~~~hg~~~~~~~~~~~l~~~------------i~~aD~VIv~t~~---vsH~~~~ 65 (97)
T PF10087_consen 1 SVLIVGGREDRERRYKRILEKYGGKLIHHGRDGGDEKKASRLPSK------------IKKADLVIVFTDY---VSHNAMW 65 (97)
T ss_pred CEEEEcCCcccHHHHHHHHHHcCCEEEEEecCCCCccchhHHHHh------------cCCCCEEEEEeCC---cChHHHH
Confidence 48999998888889999999999988777 2221112221 2346888774433 3334444
Q ss_pred HHhccCCCCCCcEEEEeCCCcHHHHHHHH
Q 026776 105 KIKDSSALREIPVVIMSSENILARIDRCL 133 (233)
Q Consensus 105 ~Lr~~~~~~~~piIvlt~~~~~~~~~~al 133 (233)
.+++......+|+++.-..+ .....+++
T Consensus 66 ~vk~~akk~~ip~~~~~~~~-~~~l~~~l 93 (97)
T PF10087_consen 66 KVKKAAKKYGIPIIYSRSRG-VSSLERAL 93 (97)
T ss_pred HHHHHHHHcCCcEEEECCCC-HHHHHHHH
Confidence 44433222367887664333 33333443
No 137
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=83.04 E-value=6.4 Score=33.41 Aligned_cols=59 Identities=14% Similarity=0.239 Sum_probs=45.1
Q ss_pred CHHHHHHHHhccCCCCCCcEEEEeCC------CcHHHHHHHHHcCCceEEeCCCCHHHHHHHHHHHhh
Q 026776 98 TGYELLKKIKDSSALREIPVVIMSSE------NILARIDRCLEDGAEDFIVKPVKLSDVKRIKDYLTR 159 (233)
Q Consensus 98 ~g~~ll~~Lr~~~~~~~~piIvlt~~------~~~~~~~~al~~Ga~dyL~KP~~~~eL~~~~~~l~~ 159 (233)
+.+++++++|+. . .+|+++++-. +.+....+|.++|+++++.-.+..+|.......+.+
T Consensus 78 ~~~~~~~~~r~~-~--~~p~vlm~Y~N~i~~~G~e~F~~~~~~aGvdgviipDLP~ee~~~~~~~~~~ 142 (263)
T CHL00200 78 KILSILSEVNGE-I--KAPIVIFTYYNPVLHYGINKFIKKISQAGVKGLIIPDLPYEESDYLISVCNL 142 (263)
T ss_pred HHHHHHHHHhcC-C--CCCEEEEecccHHHHhCHHHHHHHHHHcCCeEEEecCCCHHHHHHHHHHHHH
Confidence 467788888853 3 7898877655 335678899999999999998888888777666654
No 138
>CHL00162 thiG thiamin biosynthesis protein G; Validated
Probab=81.79 E-value=16 Score=30.87 Aligned_cols=113 Identities=14% Similarity=0.114 Sum_probs=69.5
Q ss_pred CcEEEEEeCCH----HHHHH--HHHHHhhcCCEEEEEC--CHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCCCCCH-
Q 026776 29 EVHVLAVDDSF----VDRKV--IERLLTISSCKVTAVD--SGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTG- 99 (233)
Q Consensus 29 ~~~ILIVddd~----~~~~~--l~~~L~~~g~~v~~a~--~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp~~~g- 99 (233)
-+|+=|+.|+. ...+. -.+.|-+.||.|..+. |..-|.++.. .. -.+++=+.-|-.+|
T Consensus 107 wIKLEVi~D~~~LlPD~~etl~Aae~Lv~eGF~VlPY~~~D~v~a~rLed------------~G-c~aVMPlgsPIGSg~ 173 (267)
T CHL00162 107 FVKLEVISDPKYLLPDPIGTLKAAEFLVKKGFTVLPYINADPMLAKHLED------------IG-CATVMPLGSPIGSGQ 173 (267)
T ss_pred eEEEEEeCCCcccCCChHHHHHHHHHHHHCCCEEeecCCCCHHHHHHHHH------------cC-CeEEeeccCcccCCC
Confidence 36666664432 12222 2345667899887654 4333433321 11 13455555564332
Q ss_pred ----HHHHHHHhccCCCCCCcEEEEeCCCcHHHHHHHHHcCCceEEe-----CCCCHHHHHHHHHHH
Q 026776 100 ----YELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIV-----KPVKLSDVKRIKDYL 157 (233)
Q Consensus 100 ----~~ll~~Lr~~~~~~~~piIvlt~~~~~~~~~~al~~Ga~dyL~-----KP~~~~eL~~~~~~l 157 (233)
-..++.|++.. .+|||+-.+-...+++..+++.|+|+.+. |--++.++.+.....
T Consensus 174 Gl~n~~~l~~i~e~~---~vpVivdAGIgt~sDa~~AmElGaDgVL~nSaIakA~dP~~mA~a~~~A 237 (267)
T CHL00162 174 GLQNLLNLQIIIENA---KIPVIIDAGIGTPSEASQAMELGASGVLLNTAVAQAKNPEQMAKAMKLA 237 (267)
T ss_pred CCCCHHHHHHHHHcC---CCcEEEeCCcCCHHHHHHHHHcCCCEEeecceeecCCCHHHHHHHHHHH
Confidence 35677777753 79999998889999999999999999964 556676665554433
No 139
>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional
Probab=81.41 E-value=8.4 Score=29.41 Aligned_cols=54 Identities=19% Similarity=0.214 Sum_probs=44.1
Q ss_pred CCCcEEEEEeCCHHHHHHHHHHHhhcCCEEEEEC----CHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCCC
Q 026776 27 TEEVHVLAVDDSFVDRKVIERLLTISSCKVTAVD----SGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPG 96 (233)
Q Consensus 27 ~~~~~ILIVddd~~~~~~l~~~L~~~g~~v~~a~----~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp~ 96 (233)
.++.+|+|+.......+-+..+|...|..|..+. +.+++++ ..|+|+.-..-+.
T Consensus 26 ~~gk~v~VvGrs~~vG~pla~lL~~~gatV~~~~~~t~~l~~~v~----------------~ADIVvsAtg~~~ 83 (140)
T cd05212 26 LDGKKVLVVGRSGIVGAPLQCLLQRDGATVYSCDWKTIQLQSKVH----------------DADVVVVGSPKPE 83 (140)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEeCCCCcCHHHHHh----------------hCCEEEEecCCCC
Confidence 4578999999999999999999999999998887 5555443 3599999877664
No 140
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=81.06 E-value=28 Score=28.58 Aligned_cols=92 Identities=10% Similarity=0.117 Sum_probs=53.9
Q ss_pred HHHhhcC-CEEEEECCHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCCCCCHHHHHHHHhccCCCCCCcEEEEeCCCc
Q 026776 47 RLLTISS-CKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKKIKDSSALREIPVVIMSSENI 125 (233)
Q Consensus 47 ~~L~~~g-~~v~~a~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp~~~g~~ll~~Lr~~~~~~~~piIvlt~~~~ 125 (233)
+.|...+ .-|....+.++++..++.- ....+++| .+.+-.-++++.++.+++..+ ++ +|..-.--+
T Consensus 10 ~~l~~~~~iaV~r~~~~~~a~~i~~al--------~~~Gi~~i--Eitl~~~~~~~~I~~l~~~~p--~~-~IGAGTVl~ 76 (212)
T PRK05718 10 EILRAGPVVPVIVINKLEDAVPLAKAL--------VAGGLPVL--EVTLRTPAALEAIRLIAKEVP--EA-LIGAGTVLN 76 (212)
T ss_pred HHHHHCCEEEEEEcCCHHHHHHHHHHH--------HHcCCCEE--EEecCCccHHHHHHHHHHHCC--CC-EEEEeeccC
Confidence 4445555 3555567777777766421 11224433 334555589999999987654 42 233333345
Q ss_pred HHHHHHHHHcCCceEEeCCCCHHHHHH
Q 026776 126 LARIDRCLEDGAEDFIVKPVKLSDVKR 152 (233)
Q Consensus 126 ~~~~~~al~~Ga~dyL~KP~~~~eL~~ 152 (233)
.+....++++|++-.+.--++. ++.+
T Consensus 77 ~~~a~~a~~aGA~FivsP~~~~-~vi~ 102 (212)
T PRK05718 77 PEQLAQAIEAGAQFIVSPGLTP-PLLK 102 (212)
T ss_pred HHHHHHHHHcCCCEEECCCCCH-HHHH
Confidence 6788899999998544444544 5533
No 141
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=80.69 E-value=17 Score=34.86 Aligned_cols=107 Identities=17% Similarity=0.196 Sum_probs=55.9
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhcCCEEEEECCHHHHHHHhhhhhhhh----------ccCCCCCcccEEEEcCCCCCCCH
Q 026776 30 VHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQS----------INGFDGLKVDLIITDYCMPGMTG 99 (233)
Q Consensus 30 ~~ILIVddd~~~~~~l~~~L~~~g~~v~~a~~~~~al~~l~~~~~~~----------~~~~~~~~~DlvllD~~mp~~~g 99 (233)
-+|+|+.-...- +.+.+.|.+.|+.++..+.-.+..+.++..+... .....-.+.|++++-.+-+ ...
T Consensus 401 ~~vII~G~Gr~G-~~va~~L~~~g~~vvvID~d~~~v~~~~~~g~~v~~GDat~~~~L~~agi~~A~~vvv~~~d~-~~n 478 (621)
T PRK03562 401 PRVIIAGFGRFG-QIVGRLLLSSGVKMTVLDHDPDHIETLRKFGMKVFYGDATRMDLLESAGAAKAEVLINAIDDP-QTS 478 (621)
T ss_pred CcEEEEecChHH-HHHHHHHHhCCCCEEEEECCHHHHHHHHhcCCeEEEEeCCCHHHHHhcCCCcCCEEEEEeCCH-HHH
Confidence 456666555533 3344455555655555544444333332111000 0001223467777654322 234
Q ss_pred HHHHHHHhccCCCCCCcEEEEeCCCcHHHHHHHHHcCCceEEe
Q 026776 100 YELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIV 142 (233)
Q Consensus 100 ~~ll~~Lr~~~~~~~~piIvlt~~~~~~~~~~al~~Ga~dyL~ 142 (233)
..++..+|+..+ +.++++-+. +.+...+..+.|++..+.
T Consensus 479 ~~i~~~ar~~~p--~~~iiaRa~--d~~~~~~L~~~Gad~v~~ 517 (621)
T PRK03562 479 LQLVELVKEHFP--HLQIIARAR--DVDHYIRLRQAGVEKPER 517 (621)
T ss_pred HHHHHHHHHhCC--CCeEEEEEC--CHHHHHHHHHCCCCEEeh
Confidence 566777787655 777776554 345566778899997743
No 142
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=80.25 E-value=8 Score=33.95 Aligned_cols=54 Identities=15% Similarity=0.105 Sum_probs=40.7
Q ss_pred ccEEEEcCCCCCCC-HHHHHHHHhccCCCCCCcEEEEeCCCcHHHHHHHHHcCCceEE
Q 026776 85 VDLIITDYCMPGMT-GYELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFI 141 (233)
Q Consensus 85 ~DlvllD~~mp~~~-g~~ll~~Lr~~~~~~~~piIvlt~~~~~~~~~~al~~Ga~dyL 141 (233)
+|+|.+|...+..+ -.+++++||+..+ ..++|+- .-.+.+.+..+.++|+|...
T Consensus 112 ~d~i~iD~a~gh~~~~~e~I~~ir~~~p--~~~vi~g-~V~t~e~a~~l~~aGad~i~ 166 (326)
T PRK05458 112 PEYITIDIAHGHSDSVINMIQHIKKHLP--ETFVIAG-NVGTPEAVRELENAGADATK 166 (326)
T ss_pred CCEEEEECCCCchHHHHHHHHHHHhhCC--CCeEEEE-ecCCHHHHHHHHHcCcCEEE
Confidence 59999999987644 5778999998654 5666652 22367788899999999865
No 143
>TIGR02855 spore_yabG sporulation peptidase YabG. Members of this family are the protein YabG, demonstrated for Bacillus subtilis to be an endopeptidase able to release N-terminal peptides from a number of sporulation proteins, including CotT, CotF, and SpoIVA. It appears to be expressed under control of sigma-K.
Probab=80.14 E-value=22 Score=30.31 Aligned_cols=102 Identities=14% Similarity=0.221 Sum_probs=60.8
Q ss_pred CcEEEEEeCCHHHHHHHHHHHhhcCCEEEE-----ECCHHHHHHHhhhhhhhhccCCCCCcccEEEEcC---CCC-----
Q 026776 29 EVHVLAVDDSFVDRKVIERLLTISSCKVTA-----VDSGRRALQFLGLDEEQSINGFDGLKVDLIITDY---CMP----- 95 (233)
Q Consensus 29 ~~~ILIVddd~~~~~~l~~~L~~~g~~v~~-----a~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~---~mp----- 95 (233)
+=+||=+|.|+...+..-..-++.|..+.- -.-.+....++ ....||++++-= -.-
T Consensus 104 PGrVLHiDGD~~YL~~Cl~~Ykql~i~a~G~~~~E~eqp~~i~~Ll-----------~~~~PDIlViTGHD~~~K~~~d~ 172 (283)
T TIGR02855 104 PGRVLHIDGDPEYLRKCLKLYKKIGVPVVGIHCKEKEMPEKVLDLI-----------EEVRPDILVITGHDAYSKNKGNY 172 (283)
T ss_pred CCcEEeecCCHHHHHHHHHHHHHhCCceEEEEecchhchHHHHHHH-----------HHhCCCEEEEeCchhhhcCCCCh
Confidence 568999999999888887777777754432 23344455555 567899988732 111
Q ss_pred -CCC-------HHHHHHHHhccCCCCCCcEEEEeCCCcHHHHHHHHHcCCceEEeCC
Q 026776 96 -GMT-------GYELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKP 144 (233)
Q Consensus 96 -~~~-------g~~ll~~Lr~~~~~~~~piIvlt~~~~~~~~~~al~~Ga~dyL~KP 144 (233)
+.+ -++..+..|+-.+..+ -+|++ +......-...+++||+ |-.-|
T Consensus 173 ~dl~~YrnSkyFVeaVk~aR~y~~~~D-~LVIF-AGACQS~yEall~AGAN-FASSP 226 (283)
T TIGR02855 173 MDLNAYRHSKYFVETVREARKYVPSLD-QLVIF-AGACQSHFESLIRAGAN-FASSP 226 (283)
T ss_pred hhhhhhhhhHHHHHHHHHHHhcCCCcc-cEEEE-cchhHHHHHHHHHcCcc-ccCCc
Confidence 111 2345666666544222 23333 33445556677899987 44444
No 144
>COG0159 TrpA Tryptophan synthase alpha chain [Amino acid transport and metabolism]
Probab=79.67 E-value=11 Score=32.13 Aligned_cols=59 Identities=20% Similarity=0.375 Sum_probs=43.9
Q ss_pred CHHHHHHHHhccCCCCCCcEEEEeCCC------cHHHHHHHHHcCCceEEeCCCCHHHHHHHHHHHh
Q 026776 98 TGYELLKKIKDSSALREIPVVIMSSEN------ILARIDRCLEDGAEDFIVKPVKLSDVKRIKDYLT 158 (233)
Q Consensus 98 ~g~~ll~~Lr~~~~~~~~piIvlt~~~------~~~~~~~al~~Ga~dyL~KP~~~~eL~~~~~~l~ 158 (233)
+-+++++.+|+... .+|+++++-.+ ......+|.+.|++++|.-.+..++-..+.....
T Consensus 80 ~~lel~~~~r~~~~--~~Pivlm~Y~Npi~~~Gie~F~~~~~~~GvdGlivpDLP~ee~~~~~~~~~ 144 (265)
T COG0159 80 DTLELVEEIRAKGV--KVPIVLMTYYNPIFNYGIEKFLRRAKEAGVDGLLVPDLPPEESDELLKAAE 144 (265)
T ss_pred HHHHHHHHHHhcCC--CCCEEEEEeccHHHHhhHHHHHHHHHHcCCCEEEeCCCChHHHHHHHHHHH
Confidence 45778888887655 89999998654 3445678899999999998888777655555444
No 145
>PRK08007 para-aminobenzoate synthase component II; Provisional
Probab=79.66 E-value=3.7 Score=32.84 Aligned_cols=76 Identities=17% Similarity=0.173 Sum_probs=46.5
Q ss_pred EEEEeCCHHHHHHHHHHHhhcCCEEEEECCHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCC--CCCCHHHHHHHHhcc
Q 026776 32 VLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCM--PGMTGYELLKKIKDS 109 (233)
Q Consensus 32 ILIVddd~~~~~~l~~~L~~~g~~v~~a~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~m--p~~~g~~ll~~Lr~~ 109 (233)
||+||....+-..+.++|++.|+++....+.+.-++.+ ....||.||+--.= |..++. ....++..
T Consensus 2 il~idn~Dsft~nl~~~l~~~g~~v~v~~~~~~~~~~~-----------~~~~~d~iils~GPg~p~~~~~-~~~~~~~~ 69 (187)
T PRK08007 2 ILLIDNYDSFTWNLYQYFCELGADVLVKRNDALTLADI-----------DALKPQKIVISPGPCTPDEAGI-SLDVIRHY 69 (187)
T ss_pred EEEEECCCccHHHHHHHHHHCCCcEEEEeCCCCCHHHH-----------HhcCCCEEEEcCCCCChHHCCc-cHHHHHHh
Confidence 89999998888899999999998887766543222222 22358888875321 111221 12233322
Q ss_pred CCCCCCcEEEEe
Q 026776 110 SALREIPVVIMS 121 (233)
Q Consensus 110 ~~~~~~piIvlt 121 (233)
. ..+|++.+.
T Consensus 70 ~--~~~PiLGIC 79 (187)
T PRK08007 70 A--GRLPILGVC 79 (187)
T ss_pred c--CCCCEEEEC
Confidence 2 378988875
No 146
>TIGR00007 phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase. Examples of this enzyme in Actinobacteria have been found to be bifunctional, also possessing phosphoribosylanthranilate isomerase activity ; the trusted cutoff here has now been raised to 275.0 to exclude the bifunctional group, now represented by model TIGR01919. HisA from Lactococcus lactis was reported to be inactive (MEDLINE:93322317).
Probab=79.59 E-value=32 Score=28.06 Aligned_cols=56 Identities=21% Similarity=0.337 Sum_probs=41.0
Q ss_pred ccc-EEEEcCCCCCC---CHHHHHHHHhccCCCCCCcEEEEeCCCcHHHHHHHHHcCCceEEe
Q 026776 84 KVD-LIITDYCMPGM---TGYELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIV 142 (233)
Q Consensus 84 ~~D-lvllD~~mp~~---~g~~ll~~Lr~~~~~~~~piIvlt~~~~~~~~~~al~~Ga~dyL~ 142 (233)
.++ +++.|+.--++ -.+++++.+++. ..+|+++-.+-.+.+.+.++++.|+++++.
T Consensus 158 g~~~ii~~~~~~~g~~~g~~~~~i~~i~~~---~~ipvia~GGi~~~~di~~~~~~Gadgv~i 217 (230)
T TIGR00007 158 GLEGIIYTDISRDGTLSGPNFELTKELVKA---VNVPVIASGGVSSIDDLIALKKLGVYGVIV 217 (230)
T ss_pred CCCEEEEEeecCCCCcCCCCHHHHHHHHHh---CCCCEEEeCCCCCHHHHHHHHHCCCCEEEE
Confidence 355 67677754322 126788888765 278888887778888888899999999876
No 147
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=79.49 E-value=25 Score=31.96 Aligned_cols=120 Identities=15% Similarity=0.067 Sum_probs=59.1
Q ss_pred CcEEEEEeCCHHH---HHHHHHHHhhcCCEEEEECCHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCC-CCC--HHHH
Q 026776 29 EVHVLAVDDSFVD---RKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMP-GMT--GYEL 102 (233)
Q Consensus 29 ~~~ILIVddd~~~---~~~l~~~L~~~g~~v~~a~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp-~~~--g~~l 102 (233)
+.+|.+|+-|+.. .+.+..+-+..|+.+..+.+..+....+. ....+|+||+|..-- ..+ ..+.
T Consensus 251 g~~V~li~~D~~r~~a~eqL~~~a~~~~vp~~~~~~~~~l~~~l~----------~~~~~DlVlIDt~G~~~~d~~~~~~ 320 (424)
T PRK05703 251 KKKVALITLDTYRIGAVEQLKTYAKIMGIPVEVVYDPKELAKALE----------QLRDCDVILIDTAGRSQRDKRLIEE 320 (424)
T ss_pred CCeEEEEECCccHHHHHHHHHHHHHHhCCceEccCCHHhHHHHHH----------HhCCCCEEEEeCCCCCCCCHHHHHH
Confidence 4678888877632 23344444456666666666666555542 123589999997421 112 2233
Q ss_pred HHHHhccCCCCCCcEEEEeCCCcHHHHHHH---H-HcCCceEE-eCCCCHHHHHHHHHHHh
Q 026776 103 LKKIKDSSALREIPVVIMSSENILARIDRC---L-EDGAEDFI-VKPVKLSDVKRIKDYLT 158 (233)
Q Consensus 103 l~~Lr~~~~~~~~piIvlt~~~~~~~~~~a---l-~~Ga~dyL-~KP~~~~eL~~~~~~l~ 158 (233)
+..+-.....+.-.++++++........+. + ..+.+.+| +|=.....+..++..+.
T Consensus 321 L~~ll~~~~~~~~~~LVl~a~~~~~~l~~~~~~f~~~~~~~vI~TKlDet~~~G~i~~~~~ 381 (424)
T PRK05703 321 LKALIEFSGEPIDVYLVLSATTKYEDLKDIYKHFSRLPLDGLIFTKLDETSSLGSILSLLI 381 (424)
T ss_pred HHHHHhccCCCCeEEEEEECCCCHHHHHHHHHHhCCCCCCEEEEecccccccccHHHHHHH
Confidence 333322111112346667765554444333 3 33665664 44333333444444443
No 148
>PRK07649 para-aminobenzoate/anthranilate synthase glutamine amidotransferase component II; Validated
Probab=79.42 E-value=2.5 Score=34.15 Aligned_cols=75 Identities=13% Similarity=0.185 Sum_probs=46.5
Q ss_pred EEEEeCCHHHHHHHHHHHhhcCCEEEEECCHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCCCC---CHHHHHHHHhc
Q 026776 32 VLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGM---TGYELLKKIKD 108 (233)
Q Consensus 32 ILIVddd~~~~~~l~~~L~~~g~~v~~a~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp~~---~g~~ll~~Lr~ 108 (233)
|||||....+-..+..+|++.|+++......+..++.+ ....||.||+--. |+. .+. ....++.
T Consensus 2 il~idn~dsft~nl~~~l~~~g~~v~v~~~~~~~~~~~-----------~~~~~d~iIlsgG-P~~p~~~~~-~~~~i~~ 68 (195)
T PRK07649 2 ILMIDNYDSFTFNLVQFLGELGQELVVKRNDEVTISDI-----------ENMKPDFLMISPG-PCSPNEAGI-SMEVIRY 68 (195)
T ss_pred EEEEeCCCccHHHHHHHHHHCCCcEEEEeCCCCCHHHH-----------hhCCCCEEEECCC-CCChHhCCC-chHHHHH
Confidence 89999999899999999999998887766543223322 2235888887432 211 111 2223332
Q ss_pred cCCCCCCcEEEEe
Q 026776 109 SSALREIPVVIMS 121 (233)
Q Consensus 109 ~~~~~~~piIvlt 121 (233)
.. ..+|++.+.
T Consensus 69 ~~--~~~PvLGIC 79 (195)
T PRK07649 69 FA--GKIPIFGVC 79 (195)
T ss_pred hc--CCCCEEEEc
Confidence 22 278988875
No 149
>PRK06975 bifunctional uroporphyrinogen-III synthetase/uroporphyrin-III C-methyltransferase; Reviewed
Probab=79.27 E-value=63 Score=31.24 Aligned_cols=30 Identities=20% Similarity=0.158 Sum_probs=21.7
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHhhcCCEEEE
Q 026776 28 EEVHVLAVDDSFVDRKVIERLLTISSCKVTA 58 (233)
Q Consensus 28 ~~~~ILIVddd~~~~~~l~~~L~~~g~~v~~ 58 (233)
+.-+|||+-.+. -+..+.+.|+..|+.|..
T Consensus 138 ~g~rVLi~rG~~-gr~~L~~~L~~~Ga~V~~ 167 (656)
T PRK06975 138 AGKRVLIVRGDG-GREWLAERLREAGAEVEL 167 (656)
T ss_pred CCCEEEEEcCCC-CcHHHHHHHHHCCCEEEE
Confidence 456799887663 466788888888876654
No 150
>PF03328 HpcH_HpaI: HpcH/HpaI aldolase/citrate lyase family; InterPro: IPR005000 This family includes 2,4-dihydroxyhept-2-ene-1,7-dioic acid aldolase (4.1.2 from EC) and 4-hydroxy-2-oxovalerate aldolase (4.1.2 from EC). ; GO: 0016830 carbon-carbon lyase activity, 0006725 cellular aromatic compound metabolic process; PDB: 1DXF_B 1DXE_A 3QZ6_A 3QLL_C 3QQW_F 3OYZ_A 3PUG_A 3OYX_A 1IZC_A 2V5K_B ....
Probab=78.83 E-value=28 Score=28.35 Aligned_cols=76 Identities=20% Similarity=0.241 Sum_probs=46.6
Q ss_pred CCcccEEEEcCCCCC---------CCHHHHHHHHhccCCCCCCcEEEEeCCCcHHHHHH---HHHcCCceEEeCCC-CHH
Q 026776 82 GLKVDLIITDYCMPG---------MTGYELLKKIKDSSALREIPVVIMSSENILARIDR---CLEDGAEDFIVKPV-KLS 148 (233)
Q Consensus 82 ~~~~DlvllD~~mp~---------~~g~~ll~~Lr~~~~~~~~piIvlt~~~~~~~~~~---al~~Ga~dyL~KP~-~~~ 148 (233)
...+|.|++|++-.. .+-.+++..++..... ...+++=....+.....+ +++.|+++++.-=+ +.+
T Consensus 19 ~~g~D~vilDlEd~~~~~~K~~ar~~~~~~~~~~~~~~~~-~~~~~VRvn~~~~~~~~~Dl~~l~~g~~gI~lP~ves~~ 97 (221)
T PF03328_consen 19 ASGADFVILDLEDGVPPDEKDEAREDLAEALRSIRAARAA-GSEIIVRVNSLDSPHIERDLEALDAGADGIVLPKVESAE 97 (221)
T ss_dssp TTCSSEEEEESSTTSSGGGHHHHHHHHHHHHHHHHHHTTS-SSEEEEE-SSTTCHHHHHHHHHHHTTSSEEEETT--SHH
T ss_pred hcCCCEEEEeCcccCCcccchhhHHHHHHHHHhhcccccc-cccceecCCCCCcchhhhhhhhcccCCCeeeccccCcHH
Confidence 457999999998766 4555667766653221 233443333334444445 89999999977555 456
Q ss_pred HHHHHHHHHh
Q 026776 149 DVKRIKDYLT 158 (233)
Q Consensus 149 eL~~~~~~l~ 158 (233)
++..+.+.+.
T Consensus 98 ~~~~~~~~~~ 107 (221)
T PF03328_consen 98 DARQAVAALR 107 (221)
T ss_dssp HHHHHHHHHS
T ss_pred HHHHHHHHHh
Confidence 6666666554
No 151
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=78.61 E-value=32 Score=28.63 Aligned_cols=89 Identities=13% Similarity=0.076 Sum_probs=51.2
Q ss_pred HHHHHHHHhhcCCEEEEECCH---HHHHHHhhhhhhhhccCCCCCcccEEEEcCCCCCC------CHHHHHHHHhccCCC
Q 026776 42 RKVIERLLTISSCKVTAVDSG---RRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGM------TGYELLKKIKDSSAL 112 (233)
Q Consensus 42 ~~~l~~~L~~~g~~v~~a~~~---~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp~~------~g~~ll~~Lr~~~~~ 112 (233)
...+...+++.|..+..+-+. .+.++.+ ......++++ -..|+. +..+.++++|+...
T Consensus 118 ~~~~~~~~~~~Gl~~~~~v~p~T~~e~l~~~-----------~~~~~~~l~m-sv~~~~g~~~~~~~~~~i~~lr~~~~- 184 (244)
T PRK13125 118 LEKYVEIIKNKGLKPVFFTSPKFPDLLIHRL-----------SKLSPLFIYY-GLRPATGVPLPVSVERNIKRVRNLVG- 184 (244)
T ss_pred HHHHHHHHHHcCCCEEEEECCCCCHHHHHHH-----------HHhCCCEEEE-EeCCCCCCCchHHHHHHHHHHHHhcC-
Confidence 444556667788655443222 3333333 1223456666 334442 22457777776543
Q ss_pred CCCcEEEEeCCCcHHHHHHHHHcCCceEEeCC
Q 026776 113 REIPVVIMSSENILARIDRCLEDGAEDFIVKP 144 (233)
Q Consensus 113 ~~~piIvlt~~~~~~~~~~al~~Ga~dyL~KP 144 (233)
..+|++=.+-.+.+.+.++.++|+|.++.-.
T Consensus 185 -~~~i~v~gGI~~~e~i~~~~~~gaD~vvvGS 215 (244)
T PRK13125 185 -NKYLVVGFGLDSPEDARDALSAGADGVVVGT 215 (244)
T ss_pred -CCCEEEeCCcCCHHHHHHHHHcCCCEEEECH
Confidence 4565543333367788888899999998764
No 152
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=78.60 E-value=11 Score=31.06 Aligned_cols=55 Identities=11% Similarity=0.067 Sum_probs=40.4
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhcCC--EEEEEC--CHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCC
Q 026776 30 VHVLAVDDSFVDRKVIERLLTISSC--KVTAVD--SGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMP 95 (233)
Q Consensus 30 ~~ILIVddd~~~~~~l~~~L~~~g~--~v~~a~--~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp 95 (233)
-++.-||-++...+.-++.+++.|+ .+.... +..+.+... ....||+||+|..=+
T Consensus 85 g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal~~l~~~-----------~~~~fDliFIDadK~ 143 (219)
T COG4122 85 GRLTTIERDEERAEIARENLAEAGVDDRIELLLGGDALDVLSRL-----------LDGSFDLVFIDADKA 143 (219)
T ss_pred CeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCcHHHHHHhc-----------cCCCccEEEEeCChh
Confidence 3899999999999999999999885 344443 444444431 346899999998644
No 153
>PRK06774 para-aminobenzoate synthase component II; Provisional
Probab=78.60 E-value=2.7 Score=33.60 Aligned_cols=75 Identities=9% Similarity=0.129 Sum_probs=47.1
Q ss_pred EEEEeCCHHHHHHHHHHHhhcCCEEEEECCHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCC--CCCC--HHHHHHHHh
Q 026776 32 VLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCM--PGMT--GYELLKKIK 107 (233)
Q Consensus 32 ILIVddd~~~~~~l~~~L~~~g~~v~~a~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~m--p~~~--g~~ll~~Lr 107 (233)
||+||....+-..+..+|+..|+++..+.+...-++.+ ....||.||+.-.= |..+ -..+++.+
T Consensus 2 il~id~~dsf~~nl~~~l~~~~~~~~v~~~~~~~~~~~-----------~~~~~~~iilsgGP~~~~~~~~~~~~i~~~- 69 (191)
T PRK06774 2 LLLIDNYDSFTYNLYQYFCELGTEVMVKRNDELQLTDI-----------EQLAPSHLVISPGPCTPNEAGISLAVIRHF- 69 (191)
T ss_pred EEEEECCCchHHHHHHHHHHCCCcEEEEeCCCCCHHHH-----------HhcCCCeEEEcCCCCChHhCCCchHHHHHh-
Confidence 89999999999999999999999888776543222223 22357877774321 1112 22334332
Q ss_pred ccCCCCCCcEEEEeC
Q 026776 108 DSSALREIPVVIMSS 122 (233)
Q Consensus 108 ~~~~~~~~piIvlt~ 122 (233)
. ..+||+-+.-
T Consensus 70 --~--~~~PiLGIC~ 80 (191)
T PRK06774 70 --A--DKLPILGVCL 80 (191)
T ss_pred --c--CCCCEEEECH
Confidence 2 2789988863
No 154
>PF05582 Peptidase_U57: YabG peptidase U57; InterPro: IPR008764 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. The peptidases families associated with clan U- have an unknown catalytic mechanism as the protein fold of the active site domain and the active site residues have not been reported. This is a group of peptidases belong to MEROPS peptidase family U57 (clan U-). The type example is the YabG protein of Bacillus subtilis. This is a protease involved in the synthesis and maturation of the spore coat proteins SpoIVA and YrbA of B. subtilis [].
Probab=78.42 E-value=22 Score=30.48 Aligned_cols=102 Identities=15% Similarity=0.209 Sum_probs=60.3
Q ss_pred CcEEEEEeCCHHHHHHHHHHHhhcCCEEEEE-----CCHHHHHHHhhhhhhhhccCCCCCcccEEEEcCC---CC-----
Q 026776 29 EVHVLAVDDSFVDRKVIERLLTISSCKVTAV-----DSGRRALQFLGLDEEQSINGFDGLKVDLIITDYC---MP----- 95 (233)
Q Consensus 29 ~~~ILIVddd~~~~~~l~~~L~~~g~~v~~a-----~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~---mp----- 95 (233)
+=+||=+|.|+......-..-+++|..+... +-.+...+++ ....||++++-=. +-
T Consensus 105 PGkVLHlDGD~~YL~~Cl~~Ykql~i~a~G~~~~E~eqp~~i~~Ll-----------~~~~PDIlViTGHD~~~K~~~d~ 173 (287)
T PF05582_consen 105 PGKVLHLDGDEEYLNKCLKVYKQLGIPAVGIHVPEKEQPEKIYRLL-----------EEYRPDILVITGHDGYLKNKKDY 173 (287)
T ss_pred CCeEEEecCCHHHHHHHHHHHHHcCCceEEEEechHHhhHHHHHHH-----------HHcCCCEEEEeCchhhhcCCCCh
Confidence 4579999999998888888878888655432 2223334444 5678999887321 11
Q ss_pred -CCC-------HHHHHHHHhccCCCCCCcEEEEeCCCcHHHHHHHHHcCCceEEeCC
Q 026776 96 -GMT-------GYELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKP 144 (233)
Q Consensus 96 -~~~-------g~~ll~~Lr~~~~~~~~piIvlt~~~~~~~~~~al~~Ga~dyL~KP 144 (233)
+.+ -++..+.+|+-.+..+- +|++ +......-...+++||+ |=.-|
T Consensus 174 ~dl~~YrnSkyFVeaV~~aR~~ep~~D~-LVIf-AGACQS~fEall~AGAN-FASSP 227 (287)
T PF05582_consen 174 SDLNNYRNSKYFVEAVKEARKYEPNLDD-LVIF-AGACQSHFEALLEAGAN-FASSP 227 (287)
T ss_pred hhhhhhhccHHHHHHHHHHHhcCCCccc-EEEE-cchhHHHHHHHHHcCcc-ccCCc
Confidence 111 23556666665543232 3333 33445556677899987 43333
No 155
>COG0157 NadC Nicotinate-nucleotide pyrophosphorylase [Coenzyme metabolism]
Probab=78.25 E-value=37 Score=29.10 Aligned_cols=92 Identities=22% Similarity=0.190 Sum_probs=58.2
Q ss_pred EEEEeCCHHHHHHHHHHHh----hcCCEE---EEECCHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCCCCCHHHHHH
Q 026776 32 VLAVDDSFVDRKVIERLLT----ISSCKV---TAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLK 104 (233)
Q Consensus 32 ILIVddd~~~~~~l~~~L~----~~g~~v---~~a~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp~~~g~~ll~ 104 (233)
|||=|++-...-.+++.++ ..+|.. +.+++.+++.+.+. ..+|+|++|- |....--++++
T Consensus 161 vliKDNHia~~g~i~~Av~~aR~~~~~~~kIEVEvesle~~~eAl~------------agaDiImLDN-m~~e~~~~av~ 227 (280)
T COG0157 161 VLIKDNHIAAAGSITEAVRRARAAAPFTKKIEVEVESLEEAEEALE------------AGADIIMLDN-MSPEELKEAVK 227 (280)
T ss_pred EEehhhHHHHhccHHHHHHHHHHhCCCCceEEEEcCCHHHHHHHHH------------cCCCEEEecC-CCHHHHHHHHH
Confidence 6777777665554555554 335422 45789999988873 4589999993 33323333444
Q ss_pred HHhccCCCCCCcEEEEeCCCcHHHHHHHHHcCCceE
Q 026776 105 KIKDSSALREIPVVIMSSENILARIDRCLEDGAEDF 140 (233)
Q Consensus 105 ~Lr~~~~~~~~piIvlt~~~~~~~~~~al~~Ga~dy 140 (233)
.+. .....++-.++.-..+.+......|+|-+
T Consensus 228 ~l~----~~~~~~lEaSGgIt~~ni~~yA~tGVD~I 259 (280)
T COG0157 228 LLG----LAGRALLEASGGITLENIREYAETGVDVI 259 (280)
T ss_pred Hhc----cCCceEEEEeCCCCHHHHHHHhhcCCCEE
Confidence 431 12445666777777888888888888754
No 156
>TIGR00693 thiE thiamine-phosphate pyrophosphorylase. This model includes ThiE from Bacillus subtilis but excludes its paralog, the regulatory protein TenI, and neighbors of TenI.
Probab=78.00 E-value=31 Score=27.29 Aligned_cols=57 Identities=30% Similarity=0.407 Sum_probs=40.8
Q ss_pred CcccEEEEcCCCCC--------CCHHHHHHHHhccCCCCCCcEEEEeCCCcHHHHHHHHHcCCceEEe
Q 026776 83 LKVDLIITDYCMPG--------MTGYELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIV 142 (233)
Q Consensus 83 ~~~DlvllD~~mp~--------~~g~~ll~~Lr~~~~~~~~piIvlt~~~~~~~~~~al~~Ga~dyL~ 142 (233)
...|.|.++--.+. ..|++.++++.+... .+|++++.+- +.+.+.++++.|++++..
T Consensus 115 ~g~dyi~~~~v~~t~~k~~~~~~~g~~~l~~~~~~~~--~~pv~a~GGI-~~~~~~~~~~~G~~gva~ 179 (196)
T TIGR00693 115 EGADYIGFGPIFPTPTKKDPAPPAGVELLREIAATSI--DIPIVAIGGI-TLENAAEVLAAGADGVAV 179 (196)
T ss_pred cCCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHhcC--CCCEEEECCc-CHHHHHHHHHcCCCEEEE
Confidence 46899987665442 237889998876433 5888877554 467778888999998754
No 157
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=77.77 E-value=23 Score=33.33 Aligned_cols=106 Identities=11% Similarity=0.098 Sum_probs=54.8
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhcCCEEEEECCHHHHHHHhhhhhhh----------hccCCCCCcccEEEEcCCCCCCCH
Q 026776 30 VHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQ----------SINGFDGLKVDLIITDYCMPGMTG 99 (233)
Q Consensus 30 ~~ILIVddd~~~~~~l~~~L~~~g~~v~~a~~~~~al~~l~~~~~~----------~~~~~~~~~~DlvllD~~mp~~~g 99 (233)
-+|+|+.-.+.-+ .+.+.|++.|+++...+..++..+.++..+.. ......-.+.|.+++-..-. .+-
T Consensus 418 ~hiiI~G~G~~G~-~la~~L~~~g~~vvvId~d~~~~~~~~~~g~~~i~GD~~~~~~L~~a~i~~a~~viv~~~~~-~~~ 495 (558)
T PRK10669 418 NHALLVGYGRVGS-LLGEKLLAAGIPLVVIETSRTRVDELRERGIRAVLGNAANEEIMQLAHLDCARWLLLTIPNG-YEA 495 (558)
T ss_pred CCEEEECCChHHH-HHHHHHHHCCCCEEEEECCHHHHHHHHHCCCeEEEcCCCCHHHHHhcCccccCEEEEEcCCh-HHH
Confidence 4566776665444 34445566666666665544444444321110 00011223567666543221 122
Q ss_pred HHHHHHHhccCCCCCCcEEEEeCCCcHHHHHHHHHcCCceEE
Q 026776 100 YELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFI 141 (233)
Q Consensus 100 ~~ll~~Lr~~~~~~~~piIvlt~~~~~~~~~~al~~Ga~dyL 141 (233)
..++..+|+..+ +.++++-+.+ .+......+.|+|..+
T Consensus 496 ~~iv~~~~~~~~--~~~iiar~~~--~~~~~~l~~~Gad~vv 533 (558)
T PRK10669 496 GEIVASAREKRP--DIEIIARAHY--DDEVAYITERGANQVV 533 (558)
T ss_pred HHHHHHHHHHCC--CCeEEEEECC--HHHHHHHHHcCCCEEE
Confidence 345556666554 7788876654 3444456688998666
No 158
>cd00452 KDPG_aldolase KDPG and KHG aldolase. This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.
Probab=77.72 E-value=24 Score=28.11 Aligned_cols=70 Identities=16% Similarity=0.133 Sum_probs=50.2
Q ss_pred EECCHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCCCCCHHHHHHHHhccCCCCCCcEEEEeCCCcHHHHHHHHHcCC
Q 026776 58 AVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGA 137 (233)
Q Consensus 58 ~a~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp~~~g~~ll~~Lr~~~~~~~~piIvlt~~~~~~~~~~al~~Ga 137 (233)
-+.+.+|+.+.+ ...+|+|-++- .+.. |.++++.++...+ .+|++.+.+- +.+.+.++++.|+
T Consensus 103 gv~t~~e~~~A~------------~~Gad~i~~~p-~~~~-g~~~~~~l~~~~~--~~p~~a~GGI-~~~n~~~~~~~G~ 165 (190)
T cd00452 103 GVATPTEIMQAL------------ELGADIVKLFP-AEAV-GPAYIKALKGPFP--QVRFMPTGGV-SLDNAAEWLAAGV 165 (190)
T ss_pred CcCCHHHHHHHH------------HCCCCEEEEcC-Cccc-CHHHHHHHHhhCC--CCeEEEeCCC-CHHHHHHHHHCCC
Confidence 355888887765 23578888853 3333 8999999986543 6788877555 6788889999998
Q ss_pred ceEEeCC
Q 026776 138 EDFIVKP 144 (233)
Q Consensus 138 ~dyL~KP 144 (233)
+.+-.-.
T Consensus 166 ~~v~v~s 172 (190)
T cd00452 166 VAVGGGS 172 (190)
T ss_pred EEEEEch
Confidence 8876543
No 159
>cd02065 B12-binding_like B12 binding domain (B12-BD). Most of the members bind different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide. This domain is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins. Not all members of this family contain the conserved binding motif.
Probab=77.56 E-value=16 Score=26.40 Aligned_cols=74 Identities=12% Similarity=0.147 Sum_probs=48.2
Q ss_pred eCCHHHHHHHHHHHhhcCCEEEEEC---CHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCCCC-CHHHHHHHHhccCC
Q 026776 36 DDSFVDRKVIERLLTISSCKVTAVD---SGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGM-TGYELLKKIKDSSA 111 (233)
Q Consensus 36 ddd~~~~~~l~~~L~~~g~~v~~a~---~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp~~-~g~~ll~~Lr~~~~ 111 (233)
|.+..-...+..+++..|+++.... ...+..+.+ ...+||+|.+...+... .....+..+++..+
T Consensus 10 ~~h~lg~~~~~~~l~~~G~~v~~l~~~~~~~~~~~~i-----------~~~~pdiV~iS~~~~~~~~~~~~~~~~~~~~p 78 (125)
T cd02065 10 DVHDIGKNIVAIALRDNGFEVIDLGVDVPPEEIVEAA-----------KEEDADVVGLSALSTTHMEAMKLVIEALKELG 78 (125)
T ss_pred chhhHHHHHHHHHHHHCCCEEEEcCCCCCHHHHHHHH-----------HHcCCCEEEEecchHhHHHHHHHHHHHHHhcC
Confidence 4556666778888999999988754 445555555 34679999998876543 34566666665432
Q ss_pred CCCCcEEEEe
Q 026776 112 LREIPVVIMS 121 (233)
Q Consensus 112 ~~~~piIvlt 121 (233)
. ++++++-.
T Consensus 79 ~-~~~ivvGG 87 (125)
T cd02065 79 I-DIPVVVGG 87 (125)
T ss_pred C-CCeEEEeC
Confidence 1 45555443
No 160
>PRK15320 transcriptional activator SprB; Provisional
Probab=77.55 E-value=6.9 Score=31.90 Aligned_cols=99 Identities=12% Similarity=0.048 Sum_probs=64.6
Q ss_pred EEEEEeCCHHHHHHHHHHHhhc--CCEEEEECCHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCCCCCHHHHHHHHhc
Q 026776 31 HVLAVDDSFVDRKVIERLLTIS--SCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKKIKD 108 (233)
Q Consensus 31 ~ILIVddd~~~~~~l~~~L~~~--g~~v~~a~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp~~~g~~ll~~Lr~ 108 (233)
+|+|-.++=.+.-.++.++++. |..+..+.+....+..++ ..||.+++=.--|. .-+=+...|++
T Consensus 3 ~viiyg~~w~~~~a~~~~~~~~~p~~~~~t~~~l~~ll~~l~------------~~p~a~lil~l~p~-eh~~lf~~l~~ 69 (251)
T PRK15320 3 NVIIYGINWTNCYALQSIFKQKYPEKCVKTCNSLTALLHSLS------------DMPDAGLILALNPH-EHVYLFHALLT 69 (251)
T ss_pred cEEEEeccchHHHHHHHHHHHHCCccchhhhhhHHHHHHHHh------------hCCCceEEEeeCch-hHHHHHHHHHH
Confidence 4777888888888999999875 678888888888888773 34665554322232 33345556666
Q ss_pred cCCCCCCcEEEEeCCCcHHHHHHHHHcCCceEEeCC
Q 026776 109 SSALREIPVVIMSSENILARIDRCLEDGAEDFIVKP 144 (233)
Q Consensus 109 ~~~~~~~piIvlt~~~~~~~~~~al~~Ga~dyL~KP 144 (233)
.-+ +-++++++..--..+..-..-.|+-+|+.|.
T Consensus 70 ~l~--~~~v~vv~d~l~~~dr~vl~~~g~~~~~l~~ 103 (251)
T PRK15320 70 RLQ--NRKVLVVADRLYYIDRCVLQYFGVMDYVLKD 103 (251)
T ss_pred HcC--CCceEEEecceeehhhhhhhhhcchhHHHHH
Confidence 544 7788888876543333323346888888773
No 161
>PRK11840 bifunctional sulfur carrier protein/thiazole synthase protein; Provisional
Probab=77.46 E-value=49 Score=29.02 Aligned_cols=112 Identities=12% Similarity=0.106 Sum_probs=68.2
Q ss_pred CCcEEEEEeCCHHHHHHHHHH------HhhcCCEE--EEECCHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCCC---
Q 026776 28 EEVHVLAVDDSFVDRKVIERL------LTISSCKV--TAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPG--- 96 (233)
Q Consensus 28 ~~~~ILIVddd~~~~~~l~~~------L~~~g~~v--~~a~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp~--- 96 (233)
.=+|+=|+.|+.....-+.+. |-+.||.+ ++.+|...+-+... ..+ +.++=+.-|-
T Consensus 166 ~~iKlEvi~e~~~llpd~~~~v~aa~~L~~~Gf~v~~yc~~d~~~a~~l~~------------~g~-~avmPl~~pIGsg 232 (326)
T PRK11840 166 DLVKLEVLGDAKTLYPDMVETLKATEILVKEGFQVMVYCSDDPIAAKRLED------------AGA-VAVMPLGAPIGSG 232 (326)
T ss_pred CeEEEEEcCCCCCcccCHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHh------------cCC-EEEeeccccccCC
Confidence 346666776654433322222 33458876 56677777766542 123 3343322221
Q ss_pred --CCHHHHHHHHhccCCCCCCcEEEEeCCCcHHHHHHHHHcCCceEEeC-----CCCHHHHHHHHH
Q 026776 97 --MTGYELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVK-----PVKLSDVKRIKD 155 (233)
Q Consensus 97 --~~g~~ll~~Lr~~~~~~~~piIvlt~~~~~~~~~~al~~Ga~dyL~K-----P~~~~eL~~~~~ 155 (233)
...-+.++.+.+. ..+|+|+=.+-...+++.++++.|+|+.|.- --++-.+.++.+
T Consensus 233 ~gv~~p~~i~~~~e~---~~vpVivdAGIg~~sda~~AmelGadgVL~nSaIa~a~dPv~Ma~A~~ 295 (326)
T PRK11840 233 LGIQNPYTIRLIVEG---ATVPVLVDAGVGTASDAAVAMELGCDGVLMNTAIAEAKNPVLMARAMK 295 (326)
T ss_pred CCCCCHHHHHHHHHc---CCCcEEEeCCCCCHHHHHHHHHcCCCEEEEcceeccCCCHHHHHHHHH
Confidence 2234567777765 2799999888889999999999999999764 444555544443
No 162
>TIGR02082 metH 5-methyltetrahydrofolate--homocysteine methyltransferase. S-methyltransferase (MetE, EC 2.1.1.14, the cobalamin-independent methionine synthase) and betaine-homocysteine methyltransferase.
Probab=77.27 E-value=19 Score=37.16 Aligned_cols=104 Identities=11% Similarity=0.166 Sum_probs=68.3
Q ss_pred CcEEEEE----eCCHHHHHHHHHHHhhcCCEEEEEC---CHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCCC-C-CH
Q 026776 29 EVHVLAV----DDSFVDRKVIERLLTISSCKVTAVD---SGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPG-M-TG 99 (233)
Q Consensus 29 ~~~ILIV----ddd~~~~~~l~~~L~~~g~~v~~a~---~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp~-~-~g 99 (233)
+-+|++. |-+..=...+.-+|+..||+|.... ..++.++.+ .++.+|+|-+..-|.. + .-
T Consensus 732 ~gkVvlaTV~GDvHDIGKnIV~~~L~~~GfeVIdLG~dVp~e~iv~aa-----------~e~~~diVgLS~Lmt~t~~~m 800 (1178)
T TIGR02082 732 KGKIVLATVKGDVHDIGKNIVGVVLSCNGYEVVDLGVMVPIEKILEAA-----------KDHNADVIGLSGLITPSLDEM 800 (1178)
T ss_pred CCeEEEEecCCCccHHHHHHHHHHHHhCCCEEEECCCCCCHHHHHHHH-----------HHhCCCEEEEcCcccccHHHH
Confidence 3466665 5556666666777889999998754 456666766 4568999999877653 2 23
Q ss_pred HHHHHHHhccCCCCCCcEEEEeCCCcHHHHHHH---HHcCCceEEeCCC
Q 026776 100 YELLKKIKDSSALREIPVVIMSSENILARIDRC---LEDGAEDFIVKPV 145 (233)
Q Consensus 100 ~~ll~~Lr~~~~~~~~piIvlt~~~~~~~~~~a---l~~Ga~dyL~KP~ 145 (233)
.++++.|++.+. .++|++-.+..+......- ...|++.|-.-..
T Consensus 801 ~~vi~~L~~~g~--~v~v~vGGa~~s~~~~~~~i~~~~~gad~y~~dA~ 847 (1178)
T TIGR02082 801 KEVAEEMNRRGI--TIPLLIGGAATSKTHTAVKIAPIYKGPVVYVLDAS 847 (1178)
T ss_pred HHHHHHHHhcCC--CceEEEeccccchhHHHhhhhhhccCCeEEecCHH
Confidence 567888888755 6777766555555444321 2238887765443
No 163
>TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II. This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase.
Probab=77.25 E-value=28 Score=30.15 Aligned_cols=84 Identities=20% Similarity=0.148 Sum_probs=57.1
Q ss_pred HHHHHhhcCCEEE-EECCHHHHHHHhhhhhhhhccCCCCCcccEEEEcCC-C----CCCCHHHHHHHHhccCCCCCCcEE
Q 026776 45 IERLLTISSCKVT-AVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYC-M----PGMTGYELLKKIKDSSALREIPVV 118 (233)
Q Consensus 45 l~~~L~~~g~~v~-~a~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~-m----p~~~g~~ll~~Lr~~~~~~~~piI 118 (233)
+-+.++..|..+. .+.+.+++.... ....|.|++.-. . .....+.++.++++.- ++|||
T Consensus 101 ~i~~lk~~g~~v~~~v~s~~~a~~a~------------~~GaD~Ivv~g~eagGh~g~~~~~~ll~~v~~~~---~iPvi 165 (307)
T TIGR03151 101 YIPRLKENGVKVIPVVASVALAKRME------------KAGADAVIAEGMESGGHIGELTTMALVPQVVDAV---SIPVI 165 (307)
T ss_pred HHHHHHHcCCEEEEEcCCHHHHHHHH------------HcCCCEEEEECcccCCCCCCCcHHHHHHHHHHHh---CCCEE
Confidence 3445566675543 356777765554 235788887432 1 1223588888888643 68998
Q ss_pred EEeCCCcHHHHHHHHHcCCceEEeC
Q 026776 119 IMSSENILARIDRCLEDGAEDFIVK 143 (233)
Q Consensus 119 vlt~~~~~~~~~~al~~Ga~dyL~K 143 (233)
+-.+-.+...+..++..|++++..=
T Consensus 166 aaGGI~~~~~~~~al~~GA~gV~iG 190 (307)
T TIGR03151 166 AAGGIADGRGMAAAFALGAEAVQMG 190 (307)
T ss_pred EECCCCCHHHHHHHHHcCCCEeecc
Confidence 8877788888999999999998654
No 164
>PRK05637 anthranilate synthase component II; Provisional
Probab=77.23 E-value=9.9 Score=31.01 Aligned_cols=77 Identities=16% Similarity=0.154 Sum_probs=46.4
Q ss_pred EEEEEeCCHHHHHHHHHHHhhcCCEEEEECCHHHHHHHhhhhhhhhccCCCCCcccEEEEcCC--CCCCCHHHHHHHHhc
Q 026776 31 HVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYC--MPGMTGYELLKKIKD 108 (233)
Q Consensus 31 ~ILIVddd~~~~~~l~~~L~~~g~~v~~a~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~--mp~~~g~~ll~~Lr~ 108 (233)
+||+||...-+...+..+|+..|+.+..+..... ++.+ ....||.||+--. -| .+.....+.++.
T Consensus 3 ~il~iD~~dsf~~nl~~~l~~~g~~~~v~~~~~~-~~~l-----------~~~~~~~iIlsgGPg~~-~d~~~~~~li~~ 69 (208)
T PRK05637 3 HVVLIDNHDSFVYNLVDAFAVAGYKCTVFRNTVP-VEEI-----------LAANPDLICLSPGPGHP-RDAGNMMALIDR 69 (208)
T ss_pred EEEEEECCcCHHHHHHHHHHHCCCcEEEEeCCCC-HHHH-----------HhcCCCEEEEeCCCCCH-HHhhHHHHHHHH
Confidence 6999999888888899999999987777665322 2222 1235787887321 11 122122334433
Q ss_pred cCCCCCCcEEEEeC
Q 026776 109 SSALREIPVVIMSS 122 (233)
Q Consensus 109 ~~~~~~~piIvlt~ 122 (233)
.. ..+||+.+.-
T Consensus 70 ~~--~~~PiLGICl 81 (208)
T PRK05637 70 TL--GQIPLLGICL 81 (208)
T ss_pred Hh--CCCCEEEEcH
Confidence 22 2689888753
No 165
>PLN02871 UDP-sulfoquinovose:DAG sulfoquinovosyltransferase
Probab=77.17 E-value=39 Score=30.78 Aligned_cols=64 Identities=19% Similarity=0.323 Sum_probs=39.4
Q ss_pred ccEEEEcCCCCCCCHHHHHHHHhccCCCCCCcEEEEeCCCcHHHHHHHHHc---CCceEEeCCCCHHHHHHHHHHHh
Q 026776 85 VDLIITDYCMPGMTGYELLKKIKDSSALREIPVVIMSSENILARIDRCLED---GAEDFIVKPVKLSDVKRIKDYLT 158 (233)
Q Consensus 85 ~DlvllD~~mp~~~g~~ll~~Lr~~~~~~~~piIvlt~~~~~~~~~~al~~---Ga~dyL~KP~~~~eL~~~~~~l~ 158 (233)
.|++++=.. .+.-|..+++.+.. .+|+|+....+. .+.++. |-.+++..|-+.+++.+.+..+.
T Consensus 332 aDv~V~pS~-~E~~g~~vlEAmA~-----G~PVI~s~~gg~----~eiv~~~~~~~~G~lv~~~d~~~la~~i~~ll 398 (465)
T PLN02871 332 GDVFVMPSE-SETLGFVVLEAMAS-----GVPVVAARAGGI----PDIIPPDQEGKTGFLYTPGDVDDCVEKLETLL 398 (465)
T ss_pred CCEEEECCc-ccccCcHHHHHHHc-----CCCEEEcCCCCc----HhhhhcCCCCCceEEeCCCCHHHHHHHHHHHH
Confidence 467665322 23345556666643 678875433322 234445 88999999999999876665554
No 166
>PRK06978 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=77.06 E-value=20 Score=31.06 Aligned_cols=91 Identities=11% Similarity=0.055 Sum_probs=55.9
Q ss_pred EEEEEeCCHHHHHHHHHHHh---hc-C-C-EEEEECCHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCCCCCHHHHHH
Q 026776 31 HVLAVDDSFVDRKVIERLLT---IS-S-C-KVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLK 104 (233)
Q Consensus 31 ~ILIVddd~~~~~~l~~~L~---~~-g-~-~v~~a~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp~~~g~~ll~ 104 (233)
.|||-|++-...-.+...++ .. . . -.+.+++.+++.+.+. ..+|+|++| +|...+--++++
T Consensus 178 ~vLIkdNHi~~~G~i~~av~~~r~~~~~~kIeVEvetleea~eA~~------------aGaDiImLD-nmspe~l~~av~ 244 (294)
T PRK06978 178 GILIKENHIAAAGGVGAALDAAFALNAGVPVQIEVETLAQLETALA------------HGAQSVLLD-NFTLDMMREAVR 244 (294)
T ss_pred eEEEeHHHHHHhCCHHHHHHHHHHhCCCCcEEEEcCCHHHHHHHHH------------cCCCEEEEC-CCCHHHHHHHHH
Confidence 37777777655443444332 22 1 2 2345789999998872 458999999 343333333444
Q ss_pred HHhccCCCCCCcEEEEeCCCcHHHHHHHHHcCCceE
Q 026776 105 KIKDSSALREIPVVIMSSENILARIDRCLEDGAEDF 140 (233)
Q Consensus 105 ~Lr~~~~~~~~piIvlt~~~~~~~~~~al~~Ga~dy 140 (233)
.++ ...++-.++.-+.+.+.+....|+|-.
T Consensus 245 ~~~------~~~~lEaSGGIt~~ni~~yA~tGVD~I 274 (294)
T PRK06978 245 VTA------GRAVLEVSGGVNFDTVRAFAETGVDRI 274 (294)
T ss_pred hhc------CCeEEEEECCCCHHHHHHHHhcCCCEE
Confidence 333 224566777778888888888898754
No 167
>PRK05670 anthranilate synthase component II; Provisional
Probab=76.50 E-value=7.2 Score=31.08 Aligned_cols=30 Identities=13% Similarity=0.059 Sum_probs=25.6
Q ss_pred EEEEeCCHHHHHHHHHHHhhcCCEEEEECC
Q 026776 32 VLAVDDSFVDRKVIERLLTISSCKVTAVDS 61 (233)
Q Consensus 32 ILIVddd~~~~~~l~~~L~~~g~~v~~a~~ 61 (233)
|||||....+-..+.++|.+.|+.+.....
T Consensus 2 iliid~~d~f~~~i~~~l~~~g~~~~v~~~ 31 (189)
T PRK05670 2 ILLIDNYDSFTYNLVQYLGELGAEVVVYRN 31 (189)
T ss_pred EEEEECCCchHHHHHHHHHHCCCcEEEEEC
Confidence 899999888888999999999988776644
No 168
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=76.50 E-value=38 Score=27.24 Aligned_cols=57 Identities=21% Similarity=0.216 Sum_probs=39.6
Q ss_pred CcEEEEEeCCHHHHHHHHHHHhhcCC--EEE-EECCHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCC
Q 026776 29 EVHVLAVDDSFVDRKVIERLLTISSC--KVT-AVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMP 95 (233)
Q Consensus 29 ~~~ILIVddd~~~~~~l~~~L~~~g~--~v~-~a~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp 95 (233)
--++++||-|......+++.++..++ .+. ...+...++..+. ....||+|++|---.
T Consensus 66 A~~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~da~~~L~~~~----------~~~~FDlVflDPPy~ 125 (187)
T COG0742 66 AARVVFVEKDRKAVKILKENLKALGLEGEARVLRNDALRALKQLG----------TREPFDLVFLDPPYA 125 (187)
T ss_pred CceEEEEecCHHHHHHHHHHHHHhCCccceEEEeecHHHHHHhcC----------CCCcccEEEeCCCCc
Confidence 46799999999999999999887762 222 2334446666552 222599999996443
No 169
>PRK13566 anthranilate synthase; Provisional
Probab=76.38 E-value=13 Score=36.18 Aligned_cols=82 Identities=20% Similarity=0.220 Sum_probs=52.1
Q ss_pred CCCCCcEEEEEeCCHHHHHHHHHHHhhcCCEEEEECCHHHHHHHhhhhhhhhccCCCCCcccEEEEcCC--CC-CCCHHH
Q 026776 25 SDTEEVHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYC--MP-GMTGYE 101 (233)
Q Consensus 25 ~~~~~~~ILIVddd~~~~~~l~~~L~~~g~~v~~a~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~--mp-~~~g~~ 101 (233)
...++.+|||||....+...+.++|++.|++|........ .+.+ ....||.||+--. .| +..-.+
T Consensus 522 ~~~~g~~IlvID~~dsf~~~l~~~Lr~~G~~v~vv~~~~~-~~~~-----------~~~~~DgVVLsgGpgsp~d~~~~~ 589 (720)
T PRK13566 522 AVGEGKRVLLVDHEDSFVHTLANYFRQTGAEVTTVRYGFA-EEML-----------DRVNPDLVVLSPGPGRPSDFDCKA 589 (720)
T ss_pred CCCCCCEEEEEECCCchHHHHHHHHHHCCCEEEEEECCCC-hhHh-----------hhcCCCEEEECCCCCChhhCCcHH
Confidence 3456789999998877888999999999998877654321 1112 1235898877311 11 112344
Q ss_pred HHHHHhccCCCCCCcEEEEeC
Q 026776 102 LLKKIKDSSALREIPVVIMSS 122 (233)
Q Consensus 102 ll~~Lr~~~~~~~~piIvlt~ 122 (233)
+++.+.+ .++||+.+.-
T Consensus 590 lI~~a~~----~~iPILGICl 606 (720)
T PRK13566 590 TIDAALA----RNLPIFGVCL 606 (720)
T ss_pred HHHHHHH----CCCcEEEEeh
Confidence 5555443 2689988864
No 170
>PRK09490 metH B12-dependent methionine synthase; Provisional
Probab=76.29 E-value=19 Score=37.31 Aligned_cols=103 Identities=13% Similarity=0.171 Sum_probs=67.3
Q ss_pred CcEEEEE----eCCHHHHHHHHHHHhhcCCEEEEEC---CHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCCC-C-CH
Q 026776 29 EVHVLAV----DDSFVDRKVIERLLTISSCKVTAVD---SGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPG-M-TG 99 (233)
Q Consensus 29 ~~~ILIV----ddd~~~~~~l~~~L~~~g~~v~~a~---~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp~-~-~g 99 (233)
+-+|++. |-+..-...+.-+|+..||+|.... ..++.++.+ .++.+|+|.+..-|.. + .-
T Consensus 751 ~gkvvlaTv~GDvHDIGkniV~~~L~~~GfeVIdLG~~vp~e~iv~aa-----------~e~~~diVgLS~L~t~s~~~m 819 (1229)
T PRK09490 751 NGKILMATVKGDVHDIGKNIVGVVLQCNNYEVIDLGVMVPAEKILETA-----------KEENADIIGLSGLITPSLDEM 819 (1229)
T ss_pred CCeEEEEeCCCCcchHHHHHHHHHHHhCCCEEEECCCCCCHHHHHHHH-----------HHhCCCEEEEcCcchhhHHHH
Confidence 4567666 5566666677777899999998754 456666666 4668999999877753 2 34
Q ss_pred HHHHHHHhccCCCCCCcEEEEeCCCcHHHH-HH--HHHcCCceEEeCC
Q 026776 100 YELLKKIKDSSALREIPVVIMSSENILARI-DR--CLEDGAEDFIVKP 144 (233)
Q Consensus 100 ~~ll~~Lr~~~~~~~~piIvlt~~~~~~~~-~~--al~~Ga~dyL~KP 144 (233)
.++++.|++.+. .++|++-.+..+.... .+ .--.|++.|..-.
T Consensus 820 ~~~i~~L~~~g~--~v~v~vGGa~~s~~~ta~~i~~~y~gad~y~~DA 865 (1229)
T PRK09490 820 VHVAKEMERQGF--TIPLLIGGATTSKAHTAVKIAPNYSGPVVYVTDA 865 (1229)
T ss_pred HHHHHHHHhcCC--CCeEEEEeeccchhhhhhhhhhcccCCcEEecCH
Confidence 567888888755 7887766544443221 11 1112888776543
No 171
>cd06346 PBP1_ABC_ligand_binding_like_11 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=76.19 E-value=44 Score=28.38 Aligned_cols=66 Identities=12% Similarity=0.041 Sum_probs=43.3
Q ss_pred HHHHHHHHhhcCCEEEEE-------CCHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCCCCCHHHHHHHHhccCCCCC
Q 026776 42 RKVIERLLTISSCKVTAV-------DSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKKIKDSSALRE 114 (233)
Q Consensus 42 ~~~l~~~L~~~g~~v~~a-------~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp~~~g~~ll~~Lr~~~~~~~ 114 (233)
...++..+++.|.++... .+....+..+ ....+|+|++-.. ..++..+++.+++... .
T Consensus 154 ~~~~~~~~~~~G~~vv~~~~~~~~~~d~~~~v~~l-----------~~~~pd~v~~~~~--~~~~~~~~~~~~~~G~--~ 218 (312)
T cd06346 154 ADAFTKAFEALGGTVTNVVAHEEGKSSYSSEVAAA-----------AAGGPDALVVIGY--PETGSGILRSAYEQGL--F 218 (312)
T ss_pred HHHHHHHHHHcCCEEEEEEeeCCCCCCHHHHHHHH-----------HhcCCCEEEEecc--cchHHHHHHHHHHcCC--C
Confidence 344566677778776532 3555666666 4567999987543 4488889999988754 5
Q ss_pred CcEEEEeC
Q 026776 115 IPVVIMSS 122 (233)
Q Consensus 115 ~piIvlt~ 122 (233)
.+++....
T Consensus 219 ~~~~~~~~ 226 (312)
T cd06346 219 DKFLLTDG 226 (312)
T ss_pred CceEeecc
Confidence 56665443
No 172
>TIGR00642 mmCoA_mut_beta methylmalonyl-CoA mutase, heterodimeric type, beta chain. The adenosylcobalamin-binding, catalytic chain of methylmalonyl-CoA mutase may form homodimers, as in mitochondrion and E. coli, or heterodimers with a shorter, homologous chain that does not bind adenosylcobalamin. This model describes this non-catalytic beta chain, as found in the enzyme from Propionibacterium freudenreichii, for which the 3-dimensional structure has been solved.
Probab=76.01 E-value=22 Score=34.13 Aligned_cols=121 Identities=11% Similarity=0.036 Sum_probs=73.2
Q ss_pred CccceeeeeeeccccccCCCCCCCCCcEEEEEeC-----CHHHHHHHHHHHhhcCCEEEE---ECCHHHHHHHhhhhhhh
Q 026776 4 TNGVASLRLISDEIDGFDLSPSDTEEVHVLAVDD-----SFVDRKVIERLLTISSCKVTA---VDSGRRALQFLGLDEEQ 75 (233)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~ILIVdd-----d~~~~~~l~~~L~~~g~~v~~---a~~~~~al~~l~~~~~~ 75 (233)
.+.||.||.-+ ....++.+|.++-= +..-......+|..-|+++.. +.+.+++.+...
T Consensus 478 a~~fE~LR~~s---------~~~g~rP~vfL~~lG~~a~~~aRa~Fa~nff~~gG~~~~~~~~~~~~~~~~~a~~----- 543 (619)
T TIGR00642 478 AVEFEALRDRS---------TSVGERPKVFLLCLGTLADFGGREGFSSNVWHIAGIDTIQVEGGTTAEIVVEAFK----- 543 (619)
T ss_pred ccHHHHHHHHH---------HhcCCCCeEEEeCCCChHhhccHHHHHHhHHhcCceeeccCCCCCCHHHHHHHHH-----
Confidence 34566666333 13345677777642 223334456667777887764 355666666652
Q ss_pred hccCCCCCcccEEEEcCCCC--CCCHHHHHHHHhccCCCCCCcEEEEeCCCcHHHHHHHHHcCCceEEeCCCCHHHH
Q 026776 76 SINGFDGLKVDLIITDYCMP--GMTGYELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVKLSDV 150 (233)
Q Consensus 76 ~~~~~~~~~~DlvllD~~mp--~~~g~~ll~~Lr~~~~~~~~piIvlt~~~~~~~~~~al~~Ga~dyL~KP~~~~eL 150 (233)
....+++++-..=. .-.+-++++.||+... ..|++.+.... ..+...+|+|+||.--.+.-++
T Consensus 544 ------~sga~i~viCssD~~Y~~~a~~~~~al~~ag~----~~v~lAG~p~~--~~~~~~aGvd~fi~~g~d~~~~ 608 (619)
T TIGR00642 544 ------KAGAQVAVLCSSDKVYAQQGLEVAKALKAAGA----KALYLAGAFKE--FGDDAAEAIDGRLFMKMNVVDT 608 (619)
T ss_pred ------hcCCCEEEEeCCCcchHHHHHHHHHHHHhCCC----CEEEEeCCCcc--hhhHHhcCCcceeEcCCcHHHH
Confidence 33466666643222 2346788999987643 36777776543 3346789999999988775553
No 173
>PRK06895 putative anthranilate synthase component II; Provisional
Probab=75.94 E-value=11 Score=30.02 Aligned_cols=31 Identities=10% Similarity=0.081 Sum_probs=26.1
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhcCCEEEEEC
Q 026776 30 VHVLAVDDSFVDRKVIERLLTISSCKVTAVD 60 (233)
Q Consensus 30 ~~ILIVddd~~~~~~l~~~L~~~g~~v~~a~ 60 (233)
++|||||....+-..+.++|+..|+++....
T Consensus 2 ~~iliid~~dsf~~~i~~~l~~~g~~~~v~~ 32 (190)
T PRK06895 2 TKLLIINNHDSFTFNLVDLIRKLGVPMQVVN 32 (190)
T ss_pred cEEEEEeCCCchHHHHHHHHHHcCCcEEEEE
Confidence 6899999887777779999999998777655
No 174
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=75.80 E-value=39 Score=30.88 Aligned_cols=114 Identities=12% Similarity=0.070 Sum_probs=52.3
Q ss_pred cEEEEEeCCHHH---HHHHHHHHhhcCCEEEEECCHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCCCCC--HHHHHH
Q 026776 30 VHVLAVDDSFVD---RKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMT--GYELLK 104 (233)
Q Consensus 30 ~~ILIVddd~~~---~~~l~~~L~~~g~~v~~a~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp~~~--g~~ll~ 104 (233)
.+|++++-|..- ...+..+....|..+..+.+..++.+.+ ....+|+||+|. ++.. ..+.++
T Consensus 253 ~~V~Lit~Dt~R~aA~eQLk~yAe~lgvp~~~~~~~~~l~~~l-----------~~~~~D~VLIDT--aGr~~rd~~~l~ 319 (432)
T PRK12724 253 KSVSLYTTDNYRIAAIEQLKRYADTMGMPFYPVKDIKKFKETL-----------ARDGSELILIDT--AGYSHRNLEQLE 319 (432)
T ss_pred CeEEEecccchhhhHHHHHHHHHHhcCCCeeehHHHHHHHHHH-----------HhCCCCEEEEeC--CCCCccCHHHHH
Confidence 456666655421 1223333333455444444444444444 234689999996 3321 122333
Q ss_pred HHhc----cCC-CCCCcEEEEeCCCcHHHHHHHH----HcCCceEE-eCCCCHHHHHHHHHH
Q 026776 105 KIKD----SSA-LREIPVVIMSSENILARIDRCL----EDGAEDFI-VKPVKLSDVKRIKDY 156 (233)
Q Consensus 105 ~Lr~----~~~-~~~~piIvlt~~~~~~~~~~al----~~Ga~dyL-~KP~~~~eL~~~~~~ 156 (233)
.|.+ ... .+.-.++++++........+++ ..|.++++ +|=.....+-.++..
T Consensus 320 eL~~~~~~~~~~~~~e~~LVLsAt~~~~~~~~~~~~f~~~~~~glIlTKLDEt~~~G~il~i 381 (432)
T PRK12724 320 RMQSFYSCFGEKDSVENLLVLSSTSSYHHTLTVLKAYESLNYRRILLTKLDEADFLGSFLEL 381 (432)
T ss_pred HHHHHHHhhcCCCCCeEEEEEeCCCCHHHHHHHHHHhcCCCCCEEEEEcccCCCCccHHHHH
Confidence 3322 111 1133566776665544444333 24677764 443333333334433
No 175
>PRK09016 quinolinate phosphoribosyltransferase; Validated
Probab=75.42 E-value=17 Score=31.45 Aligned_cols=91 Identities=15% Similarity=0.145 Sum_probs=54.3
Q ss_pred EEEEeCCHHHHHHHHHHHh----hcC--CEEEEECCHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCCCCCHHHHHHH
Q 026776 32 VLAVDDSFVDRKVIERLLT----ISS--CKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKK 105 (233)
Q Consensus 32 ILIVddd~~~~~~l~~~L~----~~g--~~v~~a~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp~~~g~~ll~~ 105 (233)
|||-|++-...-.+.+.++ ... .-.+.+++.+++.+.+. ..+|+|++|-. ...+--++++.
T Consensus 182 iLikdNHi~~~G~i~~av~~~r~~~~~~kIeVEv~sleea~ea~~------------~gaDiI~LDn~-s~e~~~~av~~ 248 (296)
T PRK09016 182 FLIKENHIIASGSIRQAVEKAFWLHPDVPVEVEVENLDELDQALK------------AGADIIMLDNF-TTEQMREAVKR 248 (296)
T ss_pred hccCHHHHHHhCcHHHHHHHHHHhCCCCCEEEEeCCHHHHHHHHH------------cCCCEEEeCCC-ChHHHHHHHHh
Confidence 5666665444433334332 222 24456889999999873 35799999943 32233333333
Q ss_pred HhccCCCCCCcEEEEeCCCcHHHHHHHHHcCCceEE
Q 026776 106 IKDSSALREIPVVIMSSENILARIDRCLEDGAEDFI 141 (233)
Q Consensus 106 Lr~~~~~~~~piIvlt~~~~~~~~~~al~~Ga~dyL 141 (233)
++ .-.+|..++.-+.+.+.+..+.|+|-.-
T Consensus 249 ~~------~~~~ieaSGGI~~~ni~~yA~tGVD~Is 278 (296)
T PRK09016 249 TN------GRALLEVSGNVTLETLREFAETGVDFIS 278 (296)
T ss_pred hc------CCeEEEEECCCCHHHHHHHHhcCCCEEE
Confidence 32 2235666777788888888899987553
No 176
>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed
Probab=75.36 E-value=38 Score=27.56 Aligned_cols=62 Identities=13% Similarity=0.199 Sum_probs=37.5
Q ss_pred EEcCCCCCCCHHHHHHHHhccCCCCCCcEEEEeCCCcHHHHHHHHHcCCceEEeCCCCHHHHHHH
Q 026776 89 ITDYCMPGMTGYELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVKLSDVKRI 153 (233)
Q Consensus 89 llD~~mp~~~g~~ll~~Lr~~~~~~~~piIvlt~~~~~~~~~~al~~Ga~dyL~KP~~~~eL~~~ 153 (233)
++.+.+-..++.+.++.|++..+ ..-+|-...--+.+.+..++++|++ |+.-|....++.+.
T Consensus 38 ~iEvt~~~~~~~~~i~~l~~~~~--~~~~iGaGTV~~~~~~~~a~~aGA~-fivsp~~~~~v~~~ 99 (206)
T PRK09140 38 AIEIPLNSPDPFDSIAALVKALG--DRALIGAGTVLSPEQVDRLADAGGR-LIVTPNTDPEVIRR 99 (206)
T ss_pred EEEEeCCCccHHHHHHHHHHHcC--CCcEEeEEecCCHHHHHHHHHcCCC-EEECCCCCHHHHHH
Confidence 34444555678888888876543 2223333333466788899999996 44456555555444
No 177
>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate. This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates.
Probab=74.87 E-value=44 Score=27.15 Aligned_cols=71 Identities=27% Similarity=0.341 Sum_probs=48.7
Q ss_pred EECCHHHHHHHhhhhhhhhccCCCCCcccEEEEcC-CC------CCCCHHHHHHHHhccCCCCCCcEEEEeCCCcHHHHH
Q 026776 58 AVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDY-CM------PGMTGYELLKKIKDSSALREIPVVIMSSENILARID 130 (233)
Q Consensus 58 ~a~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~-~m------p~~~g~~ll~~Lr~~~~~~~~piIvlt~~~~~~~~~ 130 (233)
.+.+.+++.... ...+|++.+.. .. ....++++++.+++.. ++|+++..+-.+.+.+.
T Consensus 129 ~v~t~~ea~~a~------------~~G~d~i~~~~~g~t~~~~~~~~~~~~~l~~i~~~~---~ipvia~GGI~~~~~~~ 193 (219)
T cd04729 129 DISTLEEALNAA------------KLGFDIIGTTLSGYTEETAKTEDPDFELLKELRKAL---GIPVIAEGRINSPEQAA 193 (219)
T ss_pred ECCCHHHHHHHH------------HcCCCEEEccCccccccccCCCCCCHHHHHHHHHhc---CCCEEEeCCCCCHHHHH
Confidence 456777775554 23467775431 11 1223578889888743 68998887777888999
Q ss_pred HHHHcCCceEEeC
Q 026776 131 RCLEDGAEDFIVK 143 (233)
Q Consensus 131 ~al~~Ga~dyL~K 143 (233)
++++.|++.++.-
T Consensus 194 ~~l~~GadgV~vG 206 (219)
T cd04729 194 KALELGADAVVVG 206 (219)
T ss_pred HHHHCCCCEEEEc
Confidence 9999999998764
No 178
>PF00290 Trp_syntA: Tryptophan synthase alpha chain; InterPro: IPR002028 Tryptophan synthase (4.2.1.20 from EC) catalyzes the last step in the biosynthesis of tryptophan [, ]: L-serine + 1-(indol-3-yl)glycerol 3-phosphate = L-tryptophan + glyceraldehyde 3-phosphate + H2O It has two functional domains, each found in bacteria and plants on a separate subunit. In Escherichia coli, the 2 subunits, A and B, are encoded by the trpA and trpB genes respectively. The alpha chain is for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate and the beta chain IPR006653 from INTERPRO is for the synthesis of tryptophan from indole and serine. In fungi the two domains are fused together in a single multifunctional protein, in the order: (NH2-A-B-COOH) [, ]. The two domains of the Neurospora crassa polypeptide are linked by a connector of 54-amino acid residues that has less than 25% identity to the 45-residue connector of the Saccharomyces cerevisiae (Baker's yeast) polypeptide. Two acidic residues are believed to serve as proton donors/acceptors in the enzyme's catalytic mechanism.; GO: 0004834 tryptophan synthase activity, 0006568 tryptophan metabolic process; PDB: 1TJR_B 1RD5_B 1K8X_A 1QOQ_A 1KFE_A 1KFB_A 2CLO_A 1TTP_A 2RH9_A 1K7F_A ....
Probab=74.76 E-value=8.9 Score=32.52 Aligned_cols=59 Identities=22% Similarity=0.433 Sum_probs=42.4
Q ss_pred CHHHHHHHHhccCCCCCCcEEEEeCCC------cHHHHHHHHHcCCceEEeCCCCHHHHHHHHHHHh
Q 026776 98 TGYELLKKIKDSSALREIPVVIMSSEN------ILARIDRCLEDGAEDFIVKPVKLSDVKRIKDYLT 158 (233)
Q Consensus 98 ~g~~ll~~Lr~~~~~~~~piIvlt~~~------~~~~~~~al~~Ga~dyL~KP~~~~eL~~~~~~l~ 158 (233)
+.+++++++|.... .+|+++++-.+ -+....+|.++|++++|.-.+..++-..+...+.
T Consensus 73 ~~~~~~~~ir~~~~--~~pivlm~Y~N~i~~~G~e~F~~~~~~aGvdGlIipDLP~ee~~~~~~~~~ 137 (259)
T PF00290_consen 73 KIFELVKEIRKKEP--DIPIVLMTYYNPIFQYGIERFFKEAKEAGVDGLIIPDLPPEESEELREAAK 137 (259)
T ss_dssp HHHHHHHHHHHHCT--SSEEEEEE-HHHHHHH-HHHHHHHHHHHTEEEEEETTSBGGGHHHHHHHHH
T ss_pred HHHHHHHHHhccCC--CCCEEEEeeccHHhccchHHHHHHHHHcCCCEEEEcCCChHHHHHHHHHHH
Confidence 45678888884444 89999998643 3456778889999999998888777655554443
No 179
>PRK06559 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=74.55 E-value=33 Score=29.63 Aligned_cols=91 Identities=13% Similarity=0.073 Sum_probs=57.1
Q ss_pred EEEEEeCCHHHHHHHHHHHh----hcCC---EEEEECCHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCCCCCHHHHH
Q 026776 31 HVLAVDDSFVDRKVIERLLT----ISSC---KVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELL 103 (233)
Q Consensus 31 ~ILIVddd~~~~~~l~~~L~----~~g~---~v~~a~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp~~~g~~ll 103 (233)
.|||-|++-.+.-.+...++ ..++ -.+.+++.+++.+.+. ..+|+|++|- |.-.+--+++
T Consensus 169 ~iLIkdNHi~~~g~i~~av~~~r~~~~~~~kIeVEv~tleea~~a~~------------agaDiImLDn-mspe~l~~av 235 (290)
T PRK06559 169 AIMLKDNHIAAVGSVQKAIAQARAYAPFVKMVEVEVESLAAAEEAAA------------AGADIIMLDN-MSLEQIEQAI 235 (290)
T ss_pred eEEEcHHHHHhhccHHHHHHHHHHhCCCCCeEEEECCCHHHHHHHHH------------cCCCEEEECC-CCHHHHHHHH
Confidence 47887877655544444443 2332 2345789999998872 3589999993 3333333444
Q ss_pred HHHhccCCCCCCcEEEEeCCCcHHHHHHHHHcCCceE
Q 026776 104 KKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDF 140 (233)
Q Consensus 104 ~~Lr~~~~~~~~piIvlt~~~~~~~~~~al~~Ga~dy 140 (233)
+.++. -.++-.++.-+.+.+.+....|+|-.
T Consensus 236 ~~~~~------~~~leaSGGI~~~ni~~yA~tGVD~I 266 (290)
T PRK06559 236 TLIAG------RSRIECSGNIDMTTISRFRGLAIDYV 266 (290)
T ss_pred HHhcC------ceEEEEECCCCHHHHHHHHhcCCCEE
Confidence 43332 24566777778888888888998754
No 180
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=74.41 E-value=25 Score=28.64 Aligned_cols=58 Identities=9% Similarity=0.092 Sum_probs=42.5
Q ss_pred CcEEEEEeCCHHHHHHHHHHHhhcCC--EEE-EECCHHHHHHHhhhhhhhhccCCCCCcccEEEEcCC
Q 026776 29 EVHVLAVDDSFVDRKVIERLLTISSC--KVT-AVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYC 93 (233)
Q Consensus 29 ~~~ILIVddd~~~~~~l~~~L~~~g~--~v~-~a~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~ 93 (233)
.-+|.-||-++...+..+++++..|+ .|. ...++.+.+..+.... ....||+||+|..
T Consensus 70 ~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~~~l~~l~~~~-------~~~~fD~VFiDa~ 130 (205)
T PF01596_consen 70 DGKITTIEIDPERAEIARENFRKAGLDDRIEVIEGDALEVLPELANDG-------EEGQFDFVFIDAD 130 (205)
T ss_dssp TSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-HHHHHHHHHHTT-------TTTSEEEEEEEST
T ss_pred cceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEeccHhhHHHHHhcc-------CCCceeEEEEccc
Confidence 45899999999999999999998775 344 3567777777663221 1236999999985
No 181
>PRK14974 cell division protein FtsY; Provisional
Probab=74.37 E-value=56 Score=28.79 Aligned_cols=63 Identities=14% Similarity=0.184 Sum_probs=30.8
Q ss_pred CcccEEEEcCCCCCCCHHHHHHHHhccC--CCCCCcEEEEeCCCcHHHH--HHHH--HcCCceEEeCCC
Q 026776 83 LKVDLIITDYCMPGMTGYELLKKIKDSS--ALREIPVVIMSSENILARI--DRCL--EDGAEDFIVKPV 145 (233)
Q Consensus 83 ~~~DlvllD~~mp~~~g~~ll~~Lr~~~--~~~~~piIvlt~~~~~~~~--~~al--~~Ga~dyL~KP~ 145 (233)
..+|+||+|..=-.....+++.+|+... ..+...++++.+....+.. .+.+ ..|.++++.-=+
T Consensus 221 ~~~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g~d~~~~a~~f~~~~~~~giIlTKl 289 (336)
T PRK14974 221 RGIDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAGNDAVEQAREFNEAVGIDGVILTKV 289 (336)
T ss_pred CCCCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccchhHHHHHHHHHhcCCCCEEEEeee
Confidence 4589999997522222344555554321 1124445555544332222 2333 257888754433
No 182
>PRK07428 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=74.10 E-value=19 Score=31.04 Aligned_cols=95 Identities=16% Similarity=0.187 Sum_probs=56.4
Q ss_pred EEEEeCCHHHHHHHHHHH----hhcCC--EE-EEECCHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCCCCCHHHHHH
Q 026776 32 VLAVDDSFVDRKVIERLL----TISSC--KV-TAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLK 104 (233)
Q Consensus 32 ILIVddd~~~~~~l~~~L----~~~g~--~v-~~a~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp~~~g~~ll~ 104 (233)
|||-|++-...-.+.+.+ +..++ .+ ..+.+.+++.+.+ ...+|+|.+| +|.-.+--++++
T Consensus 169 ilikdNHi~~~g~i~~av~~~r~~~~~~~~I~VEv~tleea~eA~------------~~GaD~I~LD-n~~~e~l~~av~ 235 (288)
T PRK07428 169 VMIKDNHIQAAGGIGEAITRIRQRIPYPLTIEVETETLEQVQEAL------------EYGADIIMLD-NMPVDLMQQAVQ 235 (288)
T ss_pred eeecHHHHHHhCCHHHHHHHHHHhCCCCCEEEEECCCHHHHHHHH------------HcCCCEEEEC-CCCHHHHHHHHH
Confidence 677776644443333333 22332 22 3468999998887 2458999999 333333333444
Q ss_pred HHhccCCCCCCcEEEEeCCCcHHHHHHHHHcCCceEEe
Q 026776 105 KIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIV 142 (233)
Q Consensus 105 ~Lr~~~~~~~~piIvlt~~~~~~~~~~al~~Ga~dyL~ 142 (233)
.++.... +++ +..++.-+.+.+.+....|+|.+-.
T Consensus 236 ~~~~~~~--~i~-leAsGGIt~~ni~~ya~tGvD~Isv 270 (288)
T PRK07428 236 LIRQQNP--RVK-IEASGNITLETIRAVAETGVDYISS 270 (288)
T ss_pred HHHhcCC--CeE-EEEECCCCHHHHHHHHHcCCCEEEE
Confidence 4544332 444 4455566778888888999987643
No 183
>cd04730 NPD_like 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDP is a member of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=74.06 E-value=47 Score=27.08 Aligned_cols=57 Identities=19% Similarity=0.324 Sum_probs=40.6
Q ss_pred cccEEEEcCCCCC-------CCHHHHHHHHhccCCCCCCcEEEEeCCCcHHHHHHHHHcCCceEEeC
Q 026776 84 KVDLIITDYCMPG-------MTGYELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVK 143 (233)
Q Consensus 84 ~~DlvllD~~mp~-------~~g~~ll~~Lr~~~~~~~~piIvlt~~~~~~~~~~al~~Ga~dyL~K 143 (233)
..|.|+++-.-.+ ...+++++++++.. ++|+++.-+-...+.+.+++..|++++..-
T Consensus 122 gad~i~~~~~~~~G~~~~~~~~~~~~i~~i~~~~---~~Pvi~~GGI~~~~~v~~~l~~GadgV~vg 185 (236)
T cd04730 122 GADALVAQGAEAGGHRGTFDIGTFALVPEVRDAV---DIPVIAAGGIADGRGIAAALALGADGVQMG 185 (236)
T ss_pred CCCEEEEeCcCCCCCCCccccCHHHHHHHHHHHh---CCCEEEECCCCCHHHHHHHHHcCCcEEEEc
Confidence 4688877542111 24577888888643 678888777666688889999999998765
No 184
>PF04321 RmlD_sub_bind: RmlD substrate binding domain; InterPro: IPR005913 dTDP-4-dehydrorhamnose reductase (1.1.1.133 from EC) catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS molecules such as core antigen and O-antigen. dTDP-6-deoxy-L-mannose + NADP+ = dTDP-4-dehydro-6-deoxy-L-mannose + NADPH ; GO: 0008831 dTDP-4-dehydrorhamnose reductase activity, 0045226 extracellular polysaccharide biosynthetic process; PDB: 2YDX_D 2YDY_A 3SC6_C 1VL0_B 2GGS_A 1KBZ_A 1KC3_A 1KC1_A 1N2S_A.
Probab=73.47 E-value=6.4 Score=33.56 Aligned_cols=54 Identities=19% Similarity=0.222 Sum_probs=37.1
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhcCCEEEEEC-------CHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCC
Q 026776 30 VHVLAVDDSFVDRKVIERLLTISSCKVTAVD-------SGRRALQFLGLDEEQSINGFDGLKVDLIITDYCM 94 (233)
Q Consensus 30 ~~ILIVddd~~~~~~l~~~L~~~g~~v~~a~-------~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~m 94 (233)
|||||+..+-.+...+...|...|+++.... +.++..+.+ ....||+||--..+
T Consensus 1 MriLI~GasG~lG~~l~~~l~~~~~~v~~~~r~~~dl~d~~~~~~~~-----------~~~~pd~Vin~aa~ 61 (286)
T PF04321_consen 1 MRILITGASGFLGSALARALKERGYEVIATSRSDLDLTDPEAVAKLL-----------EAFKPDVVINCAAY 61 (286)
T ss_dssp EEEEEETTTSHHHHHHHHHHTTTSEEEEEESTTCS-TTSHHHHHHHH-----------HHH--SEEEE----
T ss_pred CEEEEECCCCHHHHHHHHHHhhCCCEEEEeCchhcCCCCHHHHHHHH-----------HHhCCCeEecccee
Confidence 7899999999999999999999898888763 444444444 33469988865544
No 185
>PRK00811 spermidine synthase; Provisional
Probab=73.33 E-value=43 Score=28.55 Aligned_cols=67 Identities=18% Similarity=0.126 Sum_probs=39.8
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhcC------CEEE-EECCHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCCCCC----
Q 026776 30 VHVLAVDDSFVDRKVIERLLTISS------CKVT-AVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMT---- 98 (233)
Q Consensus 30 ~~ILIVddd~~~~~~l~~~L~~~g------~~v~-~a~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp~~~---- 98 (233)
-+|.+||=|+...+..++.|...+ -++. ...++.+.+.. ....||+|++|..-|..-
T Consensus 101 ~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~------------~~~~yDvIi~D~~dp~~~~~~l 168 (283)
T PRK00811 101 EKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAE------------TENSFDVIIVDSTDPVGPAEGL 168 (283)
T ss_pred CEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhh------------CCCcccEEEECCCCCCCchhhh
Confidence 468888888888888887775421 1222 34455444332 134699999998655322
Q ss_pred -HHHHHHHHhc
Q 026776 99 -GYELLKKIKD 108 (233)
Q Consensus 99 -g~~ll~~Lr~ 108 (233)
..++.+.+++
T Consensus 169 ~t~ef~~~~~~ 179 (283)
T PRK00811 169 FTKEFYENCKR 179 (283)
T ss_pred hHHHHHHHHHH
Confidence 2345555554
No 186
>TIGR00343 pyridoxal 5'-phosphate synthase, synthase subunit Pdx1. This protein had been believed to be a singlet oxygen resistance protein. Subsequent work showed that it is a protein of pyridoxine (vitamin B6) biosynthesis, and that pyridoxine quenches the highly toxic singlet form of oxygen produced by light in the presence of certain chemicals.
Probab=73.20 E-value=19 Score=30.98 Aligned_cols=50 Identities=22% Similarity=0.260 Sum_probs=37.5
Q ss_pred CHHHHHHHHhccCCCCCCcEE--EEeCCCcHHHHHHHHHcCCceEEe-----CCCCHHHH
Q 026776 98 TGYELLKKIKDSSALREIPVV--IMSSENILARIDRCLEDGAEDFIV-----KPVKLSDV 150 (233)
Q Consensus 98 ~g~~ll~~Lr~~~~~~~~piI--vlt~~~~~~~~~~al~~Ga~dyL~-----KP~~~~eL 150 (233)
-++++++++++.. .+|+| ...+-.+.+.+..+++.|+++++. |.-++.+.
T Consensus 184 ~~~elLkei~~~~---~iPVV~fAiGGI~TPedAa~~melGAdGVaVGSaI~ks~dP~~~ 240 (287)
T TIGR00343 184 VPVELLLEVLKLG---KLPVVNFAAGGVATPADAALMMQLGADGVFVGSGIFKSSNPEKL 240 (287)
T ss_pred CCHHHHHHHHHhC---CCCEEEeccCCCCCHHHHHHHHHcCCCEEEEhHHhhcCCCHHHH
Confidence 5788999998753 68998 555555789999999999999964 43345554
No 187
>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....
Probab=73.20 E-value=13 Score=30.17 Aligned_cols=59 Identities=10% Similarity=0.122 Sum_probs=35.0
Q ss_pred EEcCCCCCCCHHHHHHHHhccCCCCCCcEEEEeCCCcHHHHHHHHHcCCceEEeCCCCHHHHH
Q 026776 89 ITDYCMPGMTGYELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVKLSDVK 151 (233)
Q Consensus 89 llD~~mp~~~g~~ll~~Lr~~~~~~~~piIvlt~~~~~~~~~~al~~Ga~dyL~KP~~~~eL~ 151 (233)
++.+.+-.-+.+++++.+++..+ + -+|-...--+.+.+.+++++||+-.+. |....++.
T Consensus 36 ~iEiT~~t~~a~~~I~~l~~~~p--~-~~vGAGTV~~~e~a~~a~~aGA~FivS-P~~~~~v~ 94 (196)
T PF01081_consen 36 AIEITLRTPNALEAIEALRKEFP--D-LLVGAGTVLTAEQAEAAIAAGAQFIVS-PGFDPEVI 94 (196)
T ss_dssp EEEEETTSTTHHHHHHHHHHHHT--T-SEEEEES--SHHHHHHHHHHT-SEEEE-SS--HHHH
T ss_pred EEEEecCCccHHHHHHHHHHHCC--C-CeeEEEeccCHHHHHHHHHcCCCEEEC-CCCCHHHH
Confidence 34445555678888888887654 4 334444445778888999999985554 54444443
No 188
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated
Probab=73.06 E-value=17 Score=32.97 Aligned_cols=56 Identities=20% Similarity=0.194 Sum_probs=41.8
Q ss_pred CcccEEEEcCCCCC-CCHHHHHHHHhccCCCCCCcEEEEeCCCcHHHHHHHHHcCCceEE
Q 026776 83 LKVDLIITDYCMPG-MTGYELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFI 141 (233)
Q Consensus 83 ~~~DlvllD~~mp~-~~g~~ll~~Lr~~~~~~~~piIvlt~~~~~~~~~~al~~Ga~dyL 141 (233)
...|+|++|..-+. ..-.+++++||+..+ ++++| +..-.+.+....++++|+|...
T Consensus 164 aGvDvI~iD~a~g~~~~~~~~v~~ik~~~p--~~~vi-~g~V~T~e~a~~l~~aGaD~I~ 220 (404)
T PRK06843 164 AHVDILVIDSAHGHSTRIIELVKKIKTKYP--NLDLI-AGNIVTKEAALDLISVGADCLK 220 (404)
T ss_pred cCCCEEEEECCCCCChhHHHHHHHHHhhCC--CCcEE-EEecCCHHHHHHHHHcCCCEEE
Confidence 46899999998874 456688999988654 55544 3344567788899999999875
No 189
>PRK11359 cyclic-di-GMP phosphodiesterase; Provisional
Probab=73.04 E-value=29 Score=33.65 Aligned_cols=99 Identities=14% Similarity=0.124 Sum_probs=65.2
Q ss_pred HHHHHhhcCCEEEE--ECCHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCC-----CCCHHHHHHHHhccCCCCCCcE
Q 026776 45 IERLLTISSCKVTA--VDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMP-----GMTGYELLKKIKDSSALREIPV 117 (233)
Q Consensus 45 l~~~L~~~g~~v~~--a~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp-----~~~g~~ll~~Lr~~~~~~~~pi 117 (233)
.-..|++.||.+.. +.++...+..+ ...++|.|=+|-.+- +.....+++.|........+.
T Consensus 683 ~l~~l~~~G~~i~ld~fg~~~~~~~~l-----------~~l~~d~iKid~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~- 750 (799)
T PRK11359 683 RIQILRDMGVGLSVDDFGTGFSGLSRL-----------VSLPVTEIKIDKSFVDRCLTEKRILALLEAITSIGQSLNLT- 750 (799)
T ss_pred HHHHHHHCCCEEEEECCCCchhhHHHH-----------hhCCCCEEEECHHHHhhcccChhHHHHHHHHHHHHHHCCCe-
Confidence 34457888998865 56777777776 456799999987542 122344566554332211333
Q ss_pred EEEeCCCcHHHHHHHHHcCCc----eEEeCCCCHHHHHHHHH
Q 026776 118 VIMSSENILARIDRCLEDGAE----DFIVKPVKLSDVKRIKD 155 (233)
Q Consensus 118 Ivlt~~~~~~~~~~al~~Ga~----dyL~KP~~~~eL~~~~~ 155 (233)
++..+-.+.+....+.+.|++ .|+.||...++|...++
T Consensus 751 via~gVe~~~~~~~l~~~g~~~~QG~~~~~p~~~~~~~~~~~ 792 (799)
T PRK11359 751 VVAEGVETKEQFEMLRKIHCRVIQGYFFSRPLPAEEIPGWMS 792 (799)
T ss_pred EEEEcCCCHHHHHHHHhcCCCEEeeCeecCCCCHHHHHHHHH
Confidence 345566677788888899996 35889999999877544
No 190
>PRK06096 molybdenum transport protein ModD; Provisional
Probab=72.26 E-value=25 Score=30.30 Aligned_cols=72 Identities=15% Similarity=0.151 Sum_probs=48.8
Q ss_pred EEEEECCHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCCCCCHHHHHHHHhccCCCCCCcEEEEeCCCcHHHHHHHHH
Q 026776 55 KVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKKIKDSSALREIPVVIMSSENILARIDRCLE 134 (233)
Q Consensus 55 ~v~~a~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp~~~g~~ll~~Lr~~~~~~~~piIvlt~~~~~~~~~~al~ 134 (233)
-.+.+++.+++.+.+. ..+|+|++| +|...+--++.+.+++.. .-.++-.++.-+.+.+.+...
T Consensus 192 IeVEv~tleqa~ea~~------------agaDiI~LD-n~~~e~l~~av~~~~~~~---~~~~leaSGGI~~~ni~~yA~ 255 (284)
T PRK06096 192 IVVEADTPKEAIAALR------------AQPDVLQLD-KFSPQQATEIAQIAPSLA---PHCTLSLAGGINLNTLKNYAD 255 (284)
T ss_pred EEEECCCHHHHHHHHH------------cCCCEEEEC-CCCHHHHHHHHHHhhccC---CCeEEEEECCCCHHHHHHHHh
Confidence 3445789999999873 358999999 555444445555554332 224566777778888888889
Q ss_pred cCCceEEe
Q 026776 135 DGAEDFIV 142 (233)
Q Consensus 135 ~Ga~dyL~ 142 (233)
.|+|-+..
T Consensus 256 tGvD~Is~ 263 (284)
T PRK06096 256 CGIRLFIT 263 (284)
T ss_pred cCCCEEEE
Confidence 99886543
No 191
>TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic. A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences.
Probab=72.15 E-value=67 Score=28.39 Aligned_cols=57 Identities=14% Similarity=0.129 Sum_probs=41.1
Q ss_pred cccEEEEcCCCCCCC-HHHHHHHHhccCCCCCCcEEEEeCCCcHHHHHHHHHcCCceEEeC
Q 026776 84 KVDLIITDYCMPGMT-GYELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVK 143 (233)
Q Consensus 84 ~~DlvllD~~mp~~~-g~~ll~~Lr~~~~~~~~piIvlt~~~~~~~~~~al~~Ga~dyL~K 143 (233)
.+|+|++|..-.... -++.+++||+..+ .. .|+-..-...+.+..++++|||....-
T Consensus 121 ~~d~iviD~AhGhs~~~i~~ik~ir~~~p--~~-~viaGNV~T~e~a~~Li~aGAD~ikVg 178 (343)
T TIGR01305 121 QLKFICLDVANGYSEHFVEFVKLVREAFP--EH-TIMAGNVVTGEMVEELILSGADIVKVG 178 (343)
T ss_pred CCCEEEEECCCCcHHHHHHHHHHHHhhCC--CC-eEEEecccCHHHHHHHHHcCCCEEEEc
Confidence 589999998765443 5788999998654 33 333333567788889999999998654
No 192
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain. The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A ....
Probab=72.11 E-value=30 Score=26.74 Aligned_cols=88 Identities=17% Similarity=0.095 Sum_probs=48.3
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHhhcCCEEEE--------------ECCHHHHHHHhhhhhhhhccCCCCCcccEEEEcCC
Q 026776 28 EEVHVLAVDDSFVDRKVIERLLTISSCKVTA--------------VDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYC 93 (233)
Q Consensus 28 ~~~~ILIVddd~~~~~~l~~~L~~~g~~v~~--------------a~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~ 93 (233)
++.|+||+..-..+.+.+.++|+..++.+.. +-+.......+. +......||+||+|=
T Consensus 32 ~~~rvLvL~PTRvva~em~~aL~~~~~~~~t~~~~~~~~g~~~i~vMc~at~~~~~~-------~p~~~~~yd~II~DE- 103 (148)
T PF07652_consen 32 RRLRVLVLAPTRVVAEEMYEALKGLPVRFHTNARMRTHFGSSIIDVMCHATYGHFLL-------NPCRLKNYDVIIMDE- 103 (148)
T ss_dssp TT--EEEEESSHHHHHHHHHHTTTSSEEEESTTSS----SSSSEEEEEHHHHHHHHH-------TSSCTTS-SEEEECT-
T ss_pred ccCeEEEecccHHHHHHHHHHHhcCCcccCceeeeccccCCCcccccccHHHHHHhc-------CcccccCccEEEEec-
Confidence 4689999999999999999999876533321 011122222221 122445799999983
Q ss_pred CCCCC--HHHHHHHHhccCCCCCCcEEEEeCC
Q 026776 94 MPGMT--GYELLKKIKDSSALREIPVVIMSSE 123 (233)
Q Consensus 94 mp~~~--g~~ll~~Lr~~~~~~~~piIvlt~~ 123 (233)
.--.| .+.+.-.|+.........+|++|+.
T Consensus 104 cH~~Dp~sIA~rg~l~~~~~~g~~~~i~mTAT 135 (148)
T PF07652_consen 104 CHFTDPTSIAARGYLRELAESGEAKVIFMTAT 135 (148)
T ss_dssp TT--SHHHHHHHHHHHHHHHTTS-EEEEEESS
T ss_pred cccCCHHHHhhheeHHHhhhccCeeEEEEeCC
Confidence 33333 4444445544433234578888764
No 193
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=71.84 E-value=40 Score=27.51 Aligned_cols=54 Identities=11% Similarity=0.271 Sum_probs=33.7
Q ss_pred CCCCCHHHHHHHHhccCCCCCCcEEEEeCCCcHHHHHHHHHcCCceEEeCCCCHHHHH
Q 026776 94 MPGMTGYELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVKLSDVK 151 (233)
Q Consensus 94 mp~~~g~~ll~~Lr~~~~~~~~piIvlt~~~~~~~~~~al~~Ga~dyL~KP~~~~eL~ 151 (233)
+-.-+.++.++++++..+ ++ +|-...--+.+...+++++|++ |+.-|....++.
T Consensus 41 ~~t~~a~~~i~~l~~~~~--~~-~vGAGTVl~~~~a~~a~~aGA~-FivsP~~~~~v~ 94 (204)
T TIGR01182 41 LRTPVALDAIRLLRKEVP--DA-LIGAGTVLNPEQLRQAVDAGAQ-FIVSPGLTPELA 94 (204)
T ss_pred CCCccHHHHHHHHHHHCC--CC-EEEEEeCCCHHHHHHHHHcCCC-EEECCCCCHHHH
Confidence 344567888888887543 32 2333333467788889999988 455565444543
No 194
>COG0673 MviM Predicted dehydrogenases and related proteins [General function prediction only]
Probab=71.83 E-value=55 Score=28.12 Aligned_cols=38 Identities=16% Similarity=0.196 Sum_probs=28.4
Q ss_pred CCcHHHHHHHHHcCCceEEeCCCC--HHHHHHHHHHHhhh
Q 026776 123 ENILARIDRCLEDGAEDFIVKPVK--LSDVKRIKDYLTRD 160 (233)
Q Consensus 123 ~~~~~~~~~al~~Ga~dyL~KP~~--~~eL~~~~~~l~~~ 160 (233)
....+.+..|+++|..=|+.||+. .++..++++...+.
T Consensus 78 ~~H~e~~~~AL~aGkhVl~EKPla~t~~ea~~l~~~a~~~ 117 (342)
T COG0673 78 ALHAELALAALEAGKHVLCEKPLALTLEEAEELVELARKA 117 (342)
T ss_pred hhhHHHHHHHHhcCCEEEEcCCCCCCHHHHHHHHHHHHHc
Confidence 345678889999999999999965 56666666655543
No 195
>COG0313 Predicted methyltransferases [General function prediction only]
Probab=71.77 E-value=34 Score=29.22 Aligned_cols=85 Identities=25% Similarity=0.303 Sum_probs=50.8
Q ss_pred CcEEEEEeCCHHHHHHHHHHHhhcCCEEEEECCHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCCCCC--HHHHHHHH
Q 026776 29 EVHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMT--GYELLKKI 106 (233)
Q Consensus 29 ~~~ILIVddd~~~~~~l~~~L~~~g~~v~~a~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp~~~--g~~ll~~L 106 (233)
...++++||....+..+..+=-.....-....+.++....+... +....-=.++.|..||..+ |+.+++..
T Consensus 30 ~~D~iaaEDTR~t~~LL~~~~I~~~~is~h~hne~~~~~~li~~-------l~~g~~valVSDAG~P~ISDPG~~LV~~a 102 (275)
T COG0313 30 EVDVIAAEDTRVTRKLLSHLGIKTPLISYHEHNEKEKLPKLIPL-------LKKGKSVALVSDAGTPLISDPGYELVRAA 102 (275)
T ss_pred hCCEEEEeccHHHHHHHHHhCCCCceecccCCcHHHHHHHHHHH-------HhcCCeEEEEecCCCCcccCccHHHHHHH
Confidence 46689999998877766654211111111123444444333211 1222234567799999764 99999999
Q ss_pred hccCCCCCCcEEEEeCCC
Q 026776 107 KDSSALREIPVVIMSSEN 124 (233)
Q Consensus 107 r~~~~~~~~piIvlt~~~ 124 (233)
++. .++|+.+.+..
T Consensus 103 ~~~----gi~V~~lPG~s 116 (275)
T COG0313 103 REA----GIRVVPLPGPS 116 (275)
T ss_pred HHc----CCcEEecCCcc
Confidence 976 67888876654
No 196
>CHL00101 trpG anthranilate synthase component 2
Probab=71.46 E-value=10 Score=30.26 Aligned_cols=31 Identities=13% Similarity=0.031 Sum_probs=26.5
Q ss_pred EEEEeCCHHHHHHHHHHHhhcCCEEEEECCH
Q 026776 32 VLAVDDSFVDRKVIERLLTISSCKVTAVDSG 62 (233)
Q Consensus 32 ILIVddd~~~~~~l~~~L~~~g~~v~~a~~~ 62 (233)
|||||....+-..+.+.|+..|+.+......
T Consensus 2 iliid~~dsft~~l~~~l~~~g~~~~v~~~~ 32 (190)
T CHL00101 2 ILIIDNYDSFTYNLVQSLGELNSDVLVCRND 32 (190)
T ss_pred EEEEECCCchHHHHHHHHHhcCCCEEEEECC
Confidence 8999998888889999999999888776644
No 197
>cd04727 pdxS PdxS is a subunit of the pyridoxal 5'-phosphate (PLP) synthase, an important enzyme in deoxyxylulose 5-phosphate (DXP)-independent pathway for de novo biosynthesis of PLP, present in some eubacteria, in archaea, fungi, plants, plasmodia, and some metazoa. Together with PdxT, PdxS forms the PLP synthase, a heteromeric glutamine amidotransferase (GATase), whereby PdxT produces ammonia from glutamine and PdxS combines ammonia with five- and three-carbon phosphosugars to form PLP. PLP is the biologically active form of vitamin B6, an essential cofactor in many biochemical processes. PdxS subunits form two hexameric rings.
Probab=71.45 E-value=24 Score=30.25 Aligned_cols=43 Identities=26% Similarity=0.341 Sum_probs=33.8
Q ss_pred CHHHHHHHHhccCCCCCCcEE--EEeCCCcHHHHHHHHHcCCceEEeC
Q 026776 98 TGYELLKKIKDSSALREIPVV--IMSSENILARIDRCLEDGAEDFIVK 143 (233)
Q Consensus 98 ~g~~ll~~Lr~~~~~~~~piI--vlt~~~~~~~~~~al~~Ga~dyL~K 143 (233)
.++++++.+++.. .+|+| ...+-...+.+..+++.|+++++.=
T Consensus 181 ~d~elLk~l~~~~---~iPVV~iAeGGI~Tpena~~v~e~GAdgVaVG 225 (283)
T cd04727 181 APYELVKETAKLG---RLPVVNFAAGGVATPADAALMMQLGADGVFVG 225 (283)
T ss_pred CCHHHHHHHHHhc---CCCeEEEEeCCCCCHHHHHHHHHcCCCEEEEc
Confidence 4778899998743 58887 5555557889999999999999654
No 198
>TIGR03088 stp2 sugar transferase, PEP-CTERM/EpsH1 system associated. Members of this family include a match to the pfam00534 Glycosyl transferases group 1 domain. Nearly all are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria. In particular, these transferases are found proximal to a particular variant of exosortase, EpsH1, which appears to travel with a conserved group of genes summarized by Genome Property GenProp0652. The nature of the sugar transferase reaction catalyzed by members of this clade is unknown and may conceivably be variable with respect to substrate by species, but we hypothesize a conserved substrate.
Probab=71.30 E-value=42 Score=29.13 Aligned_cols=65 Identities=14% Similarity=0.219 Sum_probs=41.6
Q ss_pred ccEEEEcCCCCCCCHHHHHHHHhccCCCCCCcEEEEeCCCcHHHHHHHHHcCCceEEeCCCCHHHHHHHHHHHhh
Q 026776 85 VDLIITDYCMPGMTGYELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVKLSDVKRIKDYLTR 159 (233)
Q Consensus 85 ~DlvllD~~mp~~~g~~ll~~Lr~~~~~~~~piIvlt~~~~~~~~~~al~~Ga~dyL~KP~~~~eL~~~~~~l~~ 159 (233)
.|++++=- ..+.-|..+++.+.. .+|+|+ +..+. ..+.+..|..+++..+.+.+++...+..+..
T Consensus 273 adi~v~pS-~~Eg~~~~~lEAma~-----G~Pvv~-s~~~g---~~e~i~~~~~g~~~~~~d~~~la~~i~~l~~ 337 (374)
T TIGR03088 273 LDLFVLPS-LAEGISNTILEAMAS-----GLPVIA-TAVGG---NPELVQHGVTGALVPPGDAVALARALQPYVS 337 (374)
T ss_pred cCEEEecc-ccccCchHHHHHHHc-----CCCEEE-cCCCC---cHHHhcCCCceEEeCCCCHHHHHHHHHHHHh
Confidence 46666422 123446677777653 678876 33332 2345567888999999999999877766543
No 199
>cd06533 Glyco_transf_WecG_TagA The glycosyltransferase WecG/TagA superfamily contains Escherichia coli WecG, Bacillus subtilis TagA and related proteins. E. coli WecG is believed to be a UDP-N-acetyl-D-mannosaminuronic acid transferase, and is involved in enterobacterial common antigen (eca) synthesis. B. subtilis TagA plays a key role in the Wall Teichoic Acid (WTA) biosynthetic pathway, catalyzing the transfer of N-acetylmannosamine to the C4 hydroxyl of a membrane-anchored N-acetylglucosaminyl diphospholipid to make ManNAc-beta-(1,4)-GlcNAc-pp-undecaprenyl. This is the first committed step in this pathway. Also included in this group is Xanthomonas campestris pv. campestris GumM, a glycosyltransferase participating in the biosynthesis of the exopolysaccharide xanthan.
Probab=71.22 E-value=27 Score=27.36 Aligned_cols=70 Identities=10% Similarity=0.130 Sum_probs=48.3
Q ss_pred CCCcEEEEEeCCHHHHHHHHHHHhhc--CCEEEEEC-------CHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCCCC
Q 026776 27 TEEVHVLAVDDSFVDRKVIERLLTIS--SCKVTAVD-------SGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGM 97 (233)
Q Consensus 27 ~~~~~ILIVddd~~~~~~l~~~L~~~--g~~v~~a~-------~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp~~ 97 (233)
.+..+|.++...+...+.+.+.|+.. |..+.... ...+.++.+ ....||+|++-+.+|..
T Consensus 44 ~~~~~v~llG~~~~~~~~~~~~l~~~yp~l~i~g~~~g~~~~~~~~~i~~~I-----------~~~~pdiv~vglG~PkQ 112 (171)
T cd06533 44 QKGLRVFLLGAKPEVLEKAAERLRARYPGLKIVGYHHGYFGPEEEEEIIERI-----------NASGADILFVGLGAPKQ 112 (171)
T ss_pred HcCCeEEEECCCHHHHHHHHHHHHHHCCCcEEEEecCCCCChhhHHHHHHHH-----------HHcCCCEEEEECCCCHH
Confidence 45689999999999998888888765 45555421 222234444 45679999999999987
Q ss_pred CHHHHHHHHhcc
Q 026776 98 TGYELLKKIKDS 109 (233)
Q Consensus 98 ~g~~ll~~Lr~~ 109 (233)
. .++...++.
T Consensus 113 E--~~~~~~~~~ 122 (171)
T cd06533 113 E--LWIARHKDR 122 (171)
T ss_pred H--HHHHHHHHH
Confidence 6 345666554
No 200
>PRK05282 (alpha)-aspartyl dipeptidase; Validated
Probab=71.20 E-value=35 Score=28.45 Aligned_cols=66 Identities=12% Similarity=0.142 Sum_probs=47.4
Q ss_pred CCcEEEEE------eCCHHHHHHHHHHHhhcCCEEEEECCHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCCCCCHHH
Q 026776 28 EEVHVLAV------DDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYE 101 (233)
Q Consensus 28 ~~~~ILIV------ddd~~~~~~l~~~L~~~g~~v~~a~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp~~~g~~ 101 (233)
+..+|++| +|...........++..|+++......++..+.+. ..|+|++ ++.|-+.
T Consensus 30 ~~~~v~fIPtAs~~~~~~~y~~~~~~af~~lG~~v~~l~~~~d~~~~l~-------------~ad~I~v----~GGnt~~ 92 (233)
T PRK05282 30 GRRKAVFIPYAGVTQSWDDYTAKVAEALAPLGIEVTGIHRVADPVAAIE-------------NAEAIFV----GGGNTFQ 92 (233)
T ss_pred CCCeEEEECCCCCCCCHHHHHHHHHHHHHHCCCEEEEeccchhhHHHHh-------------cCCEEEE----CCccHHH
Confidence 35678877 33344556788889999999888877777666652 4688887 6888888
Q ss_pred HHHHHhccC
Q 026776 102 LLKKIKDSS 110 (233)
Q Consensus 102 ll~~Lr~~~ 110 (233)
+++.+++..
T Consensus 93 l~~~l~~~g 101 (233)
T PRK05282 93 LLKQLYERG 101 (233)
T ss_pred HHHHHHHCC
Confidence 887776543
No 201
>PF01729 QRPTase_C: Quinolinate phosphoribosyl transferase, C-terminal domain; InterPro: IPR002638 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2.4.2.19 from EC is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide [, ]. Unlike IPR004393 from INTERPRO, this domain also includes the molybdenum transport system protein ModD.; GO: 0004514 nicotinate-nucleotide diphosphorylase (carboxylating) activity, 0009435 NAD biosynthetic process; PDB: 3C2O_A 3C2F_A 3C2E_A 3C2R_A 3C2V_A 1QPN_E 1QPO_A 1QPQ_F 1QPR_E 2I14_D ....
Probab=70.30 E-value=21 Score=28.12 Aligned_cols=57 Identities=19% Similarity=0.260 Sum_probs=42.0
Q ss_pred HHHHHHHHhccCCCCCCc-EEEEeCCCcHHHHHHHHHcCCceEEeCCCCHHHHHHHHHHHhh
Q 026776 99 GYELLKKIKDSSALREIP-VVIMSSENILARIDRCLEDGAEDFIVKPVKLSDVKRIKDYLTR 159 (233)
Q Consensus 99 g~~ll~~Lr~~~~~~~~p-iIvlt~~~~~~~~~~al~~Ga~dyL~KP~~~~eL~~~~~~l~~ 159 (233)
-.++++.+|+..+ ..+ |.+=. .+.+++.+++++|+|..++--++++++.+++..+..
T Consensus 66 i~~av~~~~~~~~--~~~~I~VEv--~~~ee~~ea~~~g~d~I~lD~~~~~~~~~~v~~l~~ 123 (169)
T PF01729_consen 66 IEEAVKAARQAAP--EKKKIEVEV--ENLEEAEEALEAGADIIMLDNMSPEDLKEAVEELRE 123 (169)
T ss_dssp HHHHHHHHHHHST--TTSEEEEEE--SSHHHHHHHHHTT-SEEEEES-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCC--CCceEEEEc--CCHHHHHHHHHhCCCEEEecCcCHHHHHHHHHHHhh
Confidence 4678888888765 443 44333 346788899999999999999999999998887743
No 202
>PRK12704 phosphodiesterase; Provisional
Probab=70.19 E-value=9.3 Score=35.78 Aligned_cols=38 Identities=18% Similarity=0.223 Sum_probs=31.9
Q ss_pred CcEEEEeCCCcHH--HHHHHHHcCCceEEeCCCCHHHHHH
Q 026776 115 IPVVIMSSENILA--RIDRCLEDGAEDFIVKPVKLSDVKR 152 (233)
Q Consensus 115 ~piIvlt~~~~~~--~~~~al~~Ga~dyL~KP~~~~eL~~ 152 (233)
..+|++|+.+... .+..+++.|+.|+..||+..+++..
T Consensus 250 p~~v~ls~~~~~rre~a~~~l~~l~~dg~i~P~~iee~~~ 289 (520)
T PRK12704 250 PEAVILSGFDPIRREIARLALEKLVQDGRIHPARIEEMVE 289 (520)
T ss_pred CCeEEEecCChhhHHHHHHHHHHHHhcCCcCCCCHHHHHH
Confidence 3578888887655 7889999999999999999999843
No 203
>cd01573 modD_like ModD; Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase) present in some modABC operons in bacteria, which are involved in molybdate transport. In general, QPRTases are part of the de novo synthesis pathway of NAD in both prokaryotes and eukaryotes. They catalyse the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide.
Probab=69.92 E-value=59 Score=27.72 Aligned_cols=71 Identities=20% Similarity=0.198 Sum_probs=46.0
Q ss_pred EEEECCHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCCCCCHHHHHHHHhccCCCCCCcEEEEeCCCcHHHHHHHHHc
Q 026776 56 VTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKKIKDSSALREIPVVIMSSENILARIDRCLED 135 (233)
Q Consensus 56 v~~a~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp~~~g~~ll~~Lr~~~~~~~~piIvlt~~~~~~~~~~al~~ 135 (233)
...+.+.+++.+.+ ....|.|.+|-..|. +--++.+.++...+ ++|+++. +.-+.+.+.+..+.
T Consensus 187 gVev~t~eea~~A~------------~~gaD~I~ld~~~p~-~l~~~~~~~~~~~~--~i~i~As-GGI~~~ni~~~~~~ 250 (272)
T cd01573 187 VVEVDSLEEALAAA------------EAGADILQLDKFSPE-ELAELVPKLRSLAP--PVLLAAA-GGINIENAAAYAAA 250 (272)
T ss_pred EEEcCCHHHHHHHH------------HcCCCEEEECCCCHH-HHHHHHHHHhccCC--CceEEEE-CCCCHHHHHHHHHc
Confidence 34577888888775 235799999954442 22345555554322 5666655 44567788889999
Q ss_pred CCceEEe
Q 026776 136 GAEDFIV 142 (233)
Q Consensus 136 Ga~dyL~ 142 (233)
|++.+..
T Consensus 251 Gvd~I~v 257 (272)
T cd01573 251 GADILVT 257 (272)
T ss_pred CCcEEEE
Confidence 9998754
No 204
>TIGR00736 nifR3_rel_arch TIM-barrel protein, putative. Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins.
Probab=69.80 E-value=28 Score=28.99 Aligned_cols=59 Identities=22% Similarity=0.218 Sum_probs=44.6
Q ss_pred CCcccEEEEcCCCCCC--CHHHHHHHHhccCCCCCCcEEEEeCCCcHHHHHHHHHcCCceEEe
Q 026776 82 GLKVDLIITDYCMPGM--TGYELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIV 142 (233)
Q Consensus 82 ~~~~DlvllD~~mp~~--~g~~ll~~Lr~~~~~~~~piIvlt~~~~~~~~~~al~~Ga~dyL~ 142 (233)
....|.|.+|...++. -.++.++.+++... .+|||.--+-.+.+.+.+.++.||+.+..
T Consensus 159 ~aGad~i~Vd~~~~g~~~a~~~~I~~i~~~~~--~ipIIgNGgI~s~eda~e~l~~GAd~Vmv 219 (231)
T TIGR00736 159 DDGFDGIHVDAMYPGKPYADMDLLKILSEEFN--DKIIIGNNSIDDIESAKEMLKAGADFVSV 219 (231)
T ss_pred HcCCCEEEEeeCCCCCchhhHHHHHHHHHhcC--CCcEEEECCcCCHHHHHHHHHhCCCeEEE
Confidence 3457888888766654 35888999987532 48888777767888899999999998864
No 205
>cd01948 EAL EAL domain. This domain is found in diverse bacterial signaling proteins. It is called EAL after its conserved residues and is also known as domain of unknown function 2 (DUF2). The EAL domain has been shown to stimulate degradation of a second messenger, cyclic di-GMP, and is a good candidate for a diguanylate phosphodiesterase function. Together with the GGDEF domain, EAL might be involved in regulating cell surface adhesiveness in bacteria.
Probab=69.70 E-value=16 Score=29.54 Aligned_cols=91 Identities=15% Similarity=0.224 Sum_probs=54.8
Q ss_pred HHHHHhhcCCEEEE--ECCHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCCC-----CCHHHHHHHHhccCCCCCCcE
Q 026776 45 IERLLTISSCKVTA--VDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPG-----MTGYELLKKIKDSSALREIPV 117 (233)
Q Consensus 45 l~~~L~~~g~~v~~--a~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp~-----~~g~~ll~~Lr~~~~~~~~pi 117 (233)
+-..++..|+.+.. +..+...++.+ ....||.|-+|..+-. .....+++.+.......++.
T Consensus 137 ~~~~l~~~G~~l~ld~~g~~~~~~~~l-----------~~~~~d~iKld~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~- 204 (240)
T cd01948 137 TLRRLRALGVRIALDDFGTGYSSLSYL-----------KRLPVDYLKIDRSFVRDIETDPEDRAIVRAIIALAHSLGLK- 204 (240)
T ss_pred HHHHHHHCCCeEEEeCCCCcHhhHHHH-----------HhCCCCEEEECHHHHHhHhcChhhHHHHHHHHHHHHHCCCe-
Confidence 34456778988776 34555555555 4457999999965431 23345555554432212333
Q ss_pred EEEeCCCcHHHHHHHHHcCCc----eEEeCCCCH
Q 026776 118 VIMSSENILARIDRCLEDGAE----DFIVKPVKL 147 (233)
Q Consensus 118 Ivlt~~~~~~~~~~al~~Ga~----dyL~KP~~~ 147 (233)
+++++-.+.+....+.+.|++ .|+.||...
T Consensus 205 via~gVe~~~~~~~~~~~gi~~~QG~~~~~p~~~ 238 (240)
T cd01948 205 VVAEGVETEEQLELLRELGCDYVQGYLFSRPLPA 238 (240)
T ss_pred EEEEecCCHHHHHHHHHcCCCeeeeceeccCCCC
Confidence 446666777888888899984 345566543
No 206
>TIGR01579 MiaB-like-C MiaB-like tRNA modifying enzyme. This clade is a member of a subfamily (TIGR00089) and spans low GC Gram positive bacteria, alpha and epsilon proteobacteria, Campylobacter, Porphyromonas, Aquifex, Thermotoga, Chlamydia, Treponema and Fusobacterium.
Probab=69.67 E-value=45 Score=30.05 Aligned_cols=94 Identities=7% Similarity=0.145 Sum_probs=58.3
Q ss_pred CHHHHHHHHHHHhhcCCEEEEECCHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCCCC----CHHHHHHHHhccCCCC
Q 026776 38 SFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGM----TGYELLKKIKDSSALR 113 (233)
Q Consensus 38 d~~~~~~l~~~L~~~g~~v~~a~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp~~----~g~~ll~~Lr~~~~~~ 113 (233)
|....+.|...|...||+.+.. ...+|+|++...-... ..++.++.+++..+
T Consensus 9 N~~ds~~~~~~l~~~g~~~~~~----------------------~~~aD~v~intctv~~~a~~~~~~~i~~~k~~~p-- 64 (414)
T TIGR01579 9 NQYESESLKNQLIQKGYEVVPD----------------------EDKADVYIINTCTVTAKADSKARRAIRRARRQNP-- 64 (414)
T ss_pred CHHHHHHHHHHHHHCcCEECCC----------------------cccCCEEEEeccccchHHHHHHHHHHHHHHhhCC--
Confidence 4455677888888888865421 2247999998654433 36888888887654
Q ss_pred CCcEEEEeCCCcHHHHHHHHHcCCceEEeCCCCHHHHHHHHHH
Q 026776 114 EIPVVIMSSENILARIDRCLEDGAEDFIVKPVKLSDVKRIKDY 156 (233)
Q Consensus 114 ~~piIvlt~~~~~~~~~~al~~Ga~dyL~KP~~~~eL~~~~~~ 156 (233)
..+|| +++......-.++++....|++..+-....+..++..
T Consensus 65 ~~~vv-vgGc~a~~~~ee~~~~~~vD~vv~~e~~~~~~~ll~~ 106 (414)
T TIGR01579 65 TAKII-VTGCYAQSNPKELADLKDVDLVLGNKEKDKINKLLSL 106 (414)
T ss_pred CcEEE-EECCccccCHHHHhcCCCCcEEECCCCHHHHHHHHHH
Confidence 55555 4444333333344455556788877766666666553
No 207
>PRK05848 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=69.36 E-value=72 Score=27.27 Aligned_cols=95 Identities=13% Similarity=0.111 Sum_probs=56.0
Q ss_pred EEEEeCCHHHHHHHHHHHh----hcCC---EEEEECCHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCCCCCHHHHHH
Q 026776 32 VLAVDDSFVDRKVIERLLT----ISSC---KVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLK 104 (233)
Q Consensus 32 ILIVddd~~~~~~l~~~L~----~~g~---~v~~a~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp~~~g~~ll~ 104 (233)
|||-|++-.....+...++ ..++ -...+++.+++.+.+. ..+|+|.+|- |.-.+--++++
T Consensus 155 vlikdnHi~~~g~i~~~v~~~k~~~p~~~~I~VEv~tleea~~A~~------------~GaDiI~LDn-~~~e~l~~~v~ 221 (273)
T PRK05848 155 LMLKDTHLKHIKDLKEFIQHARKNIPFTAKIEIECESLEEAKNAMN------------AGADIVMCDN-MSVEEIKEVVA 221 (273)
T ss_pred hCcCHHHHHHHCcHHHHHHHHHHhCCCCceEEEEeCCHHHHHHHHH------------cCCCEEEECC-CCHHHHHHHHH
Confidence 5565665444444444442 3342 3345789999998873 3589999983 32222223333
Q ss_pred HHhccCCCCCCcEEEEeCCCcHHHHHHHHHcCCceEEe
Q 026776 105 KIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIV 142 (233)
Q Consensus 105 ~Lr~~~~~~~~piIvlt~~~~~~~~~~al~~Ga~dyL~ 142 (233)
.++... ++ ..|..++.-+.+.+.+..+.|+|.+..
T Consensus 222 ~~~~~~--~~-~~ieAsGgIt~~ni~~ya~~GvD~Isv 256 (273)
T PRK05848 222 YRNANY--PH-VLLEASGNITLENINAYAKSGVDAISS 256 (273)
T ss_pred HhhccC--CC-eEEEEECCCCHHHHHHHHHcCCCEEEe
Confidence 332211 13 356667777888999999999987654
No 208
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=69.36 E-value=59 Score=27.61 Aligned_cols=107 Identities=11% Similarity=0.140 Sum_probs=49.2
Q ss_pred CcEEEEEeCCHH---HHHHHHHHHhhcCCEEEEECCH---HH-HHHHhhhhhhhhccCCCCCcccEEEEcCCCCCCCHHH
Q 026776 29 EVHVLAVDDSFV---DRKVIERLLTISSCKVTAVDSG---RR-ALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYE 101 (233)
Q Consensus 29 ~~~ILIVddd~~---~~~~l~~~L~~~g~~v~~a~~~---~~-al~~l~~~~~~~~~~~~~~~~DlvllD~~mp~~~g~~ 101 (233)
..+|++|+-|.. ..+.+..+.+..|..+.....+ .. ..+.+... ....+|+||+|..=-......
T Consensus 100 g~~V~li~~D~~r~~a~~ql~~~~~~~~i~~~~~~~~~dp~~~~~~~l~~~--------~~~~~D~ViIDT~G~~~~d~~ 171 (272)
T TIGR00064 100 GKSVLLAAGDTFRAAAIEQLEEWAKRLGVDVIKQKEGADPAAVAFDAIQKA--------KARNIDVVLIDTAGRLQNKVN 171 (272)
T ss_pred CCEEEEEeCCCCCHHHHHHHHHHHHhCCeEEEeCCCCCCHHHHHHHHHHHH--------HHCCCCEEEEeCCCCCcchHH
Confidence 357888876642 2234444555556554433221 11 11212100 234689999997422222333
Q ss_pred HHHHHhccC--------CCCCCcEEEEeCCCcHHHHHHH---H-HcCCceEEeC
Q 026776 102 LLKKIKDSS--------ALREIPVVIMSSENILARIDRC---L-EDGAEDFIVK 143 (233)
Q Consensus 102 ll~~Lr~~~--------~~~~~piIvlt~~~~~~~~~~a---l-~~Ga~dyL~K 143 (233)
++.+|++.. ..+.-.++++.+....+...++ . ..+.++++.-
T Consensus 172 ~~~el~~~~~~~~~~~~~~~~~~~LVl~a~~~~~~~~~~~~f~~~~~~~g~IlT 225 (272)
T TIGR00064 172 LMDELKKIKRVIKKVDKDAPDEVLLVLDATTGQNALEQAKVFNEAVGLTGIILT 225 (272)
T ss_pred HHHHHHHHHHHHhcccCCCCceEEEEEECCCCHHHHHHHHHHHhhCCCCEEEEE
Confidence 443333211 1124456666665443333222 2 2566776543
No 209
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=69.28 E-value=62 Score=26.50 Aligned_cols=93 Identities=16% Similarity=0.104 Sum_probs=52.9
Q ss_pred HHhhcC-CEEEEECCHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCCCCCHHHHHHHHhccCCCCCC--cEEEEeCCC
Q 026776 48 LLTISS-CKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKKIKDSSALREI--PVVIMSSEN 124 (233)
Q Consensus 48 ~L~~~g-~~v~~a~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp~~~g~~ll~~Lr~~~~~~~~--piIvlt~~~ 124 (233)
.|...+ .-|....+.++++...+.-. .-.+=++.+.|-.-+.++.++.|++... .- -+|-...--
T Consensus 9 ~l~~~~vi~vir~~~~~~a~~~~~al~----------~~Gi~~iEit~~~~~a~~~i~~l~~~~~--~~p~~~vGaGTV~ 76 (213)
T PRK06552 9 KLKANGVVAVVRGESKEEALKISLAVI----------KGGIKAIEVTYTNPFASEVIKELVELYK--DDPEVLIGAGTVL 76 (213)
T ss_pred HHHHCCEEEEEECCCHHHHHHHHHHHH----------HCCCCEEEEECCCccHHHHHHHHHHHcC--CCCCeEEeeeeCC
Confidence 444444 24444556666655543211 1123344555566778899999987542 21 233333345
Q ss_pred cHHHHHHHHHcCCceEEeCCCCHHHHHHH
Q 026776 125 ILARIDRCLEDGAEDFIVKPVKLSDVKRI 153 (233)
Q Consensus 125 ~~~~~~~al~~Ga~dyL~KP~~~~eL~~~ 153 (233)
+.+.+.+++++|++ |+.-|....++.+.
T Consensus 77 ~~~~~~~a~~aGA~-FivsP~~~~~v~~~ 104 (213)
T PRK06552 77 DAVTARLAILAGAQ-FIVSPSFNRETAKI 104 (213)
T ss_pred CHHHHHHHHHcCCC-EEECCCCCHHHHHH
Confidence 67888899999988 55566655555443
No 210
>PRK10742 putative methyltransferase; Provisional
Probab=69.05 E-value=57 Score=27.52 Aligned_cols=57 Identities=14% Similarity=0.113 Sum_probs=39.6
Q ss_pred CcEEEEEeCCHHHHHHHHHHHhhc------CC----EEEE-ECCHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCCCC
Q 026776 29 EVHVLAVDDSFVDRKVIERLLTIS------SC----KVTA-VDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGM 97 (233)
Q Consensus 29 ~~~ILIVddd~~~~~~l~~~L~~~------g~----~v~~-a~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp~~ 97 (233)
+-+|..||-++.....++.-|+.. +. ++.. ..+..+.+... ...||+|++|-..|..
T Consensus 110 G~~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~da~~~L~~~------------~~~fDVVYlDPMfp~~ 177 (250)
T PRK10742 110 GCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDI------------TPRPQVVYLDPMFPHK 177 (250)
T ss_pred CCEEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeCcHHHHHhhC------------CCCCcEEEECCCCCCC
Confidence 456999999999999999998763 21 2222 34555555433 2369999999888864
No 211
>cd04723 HisA_HisF Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase (HisA) and the cyclase subunit of imidazoleglycerol phosphate synthase (HisF). The ProFAR isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene. The Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and pl
Probab=68.99 E-value=27 Score=28.93 Aligned_cols=54 Identities=24% Similarity=0.374 Sum_probs=42.1
Q ss_pred cEEEEcCCCCCC---CHHHHHHHHhccCCCCCCcEEEEeCCCcHHHHHHHHHcCCceEEe
Q 026776 86 DLIITDYCMPGM---TGYELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIV 142 (233)
Q Consensus 86 DlvllD~~mp~~---~g~~ll~~Lr~~~~~~~~piIvlt~~~~~~~~~~al~~Ga~dyL~ 142 (233)
.++++|+..-+. ..+++++.+.+. ..+|+++-.+-.+.+.+.++++.|++..+.
T Consensus 161 ~li~~di~~~G~~~g~~~~~~~~i~~~---~~ipvi~~GGi~s~edi~~l~~~G~~~viv 217 (233)
T cd04723 161 ELIVLDIDRVGSGQGPDLELLERLAAR---ADIPVIAAGGVRSVEDLELLKKLGASGALV 217 (233)
T ss_pred eEEEEEcCccccCCCcCHHHHHHHHHh---cCCCEEEeCCCCCHHHHHHHHHcCCCEEEE
Confidence 488899976442 236777888764 278999888888999999999999999875
No 212
>smart00052 EAL Putative diguanylate phosphodiesterase. Putative diguanylate phosphodiesterase, present in a variety of bacteria.
Probab=68.80 E-value=23 Score=28.52 Aligned_cols=91 Identities=16% Similarity=0.254 Sum_probs=54.4
Q ss_pred HHHHHhhcCCEEEE--ECCHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCCC-----CCHHHHHHHHhccCCCCCCcE
Q 026776 45 IERLLTISSCKVTA--VDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPG-----MTGYELLKKIKDSSALREIPV 117 (233)
Q Consensus 45 l~~~L~~~g~~v~~--a~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp~-----~~g~~ll~~Lr~~~~~~~~pi 117 (233)
.-..|+..|+.+.. +..+..-+..+ ....+|.|-+|..+-. .....+++.+........+.
T Consensus 138 ~i~~l~~~G~~ialddfg~~~~~~~~l-----------~~l~~d~iKld~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~- 205 (241)
T smart00052 138 TLQRLRELGVRIALDDFGTGYSSLSYL-----------KRLPVDLLKIDKSFVRDLQTDPEDEAIVQSIIELAQKLGLQ- 205 (241)
T ss_pred HHHHHHHCCCEEEEeCCCCcHHHHHHH-----------HhCCCCeEEECHHHHhhhccChhHHHHHHHHHHHHHHCCCe-
Confidence 34456778887765 44555555665 4457999999965431 12334555554432211333
Q ss_pred EEEeCCCcHHHHHHHHHcCCc---e-EEeCCCCH
Q 026776 118 VIMSSENILARIDRCLEDGAE---D-FIVKPVKL 147 (233)
Q Consensus 118 Ivlt~~~~~~~~~~al~~Ga~---d-yL~KP~~~ 147 (233)
++..+-.+.+....+.+.|++ + |+.||...
T Consensus 206 via~gVe~~~~~~~l~~~Gi~~~QG~~~~~p~~~ 239 (241)
T smart00052 206 VVAEGVETPEQLDLLRSLGCDYGQGYLFSRPLPL 239 (241)
T ss_pred EEEecCCCHHHHHHHHHcCCCEEeeceeccCCCC
Confidence 445566677888888899985 3 46677653
No 213
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=68.70 E-value=95 Score=28.40 Aligned_cols=107 Identities=11% Similarity=0.096 Sum_probs=53.6
Q ss_pred CcEEEEEeCCHH---HHHHHHHHHhhcCCEEEEECCHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCCCCCHHHHHHH
Q 026776 29 EVHVLAVDDSFV---DRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKK 105 (233)
Q Consensus 29 ~~~ILIVddd~~---~~~~l~~~L~~~g~~v~~a~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp~~~g~~ll~~ 105 (233)
+.+|++++-|.. ..+.+..+-...|+.+..+.+..+..+.+..-. ....+|+||+|..=-.....+.+++
T Consensus 269 GkkVglI~aDt~RiaAvEQLk~yae~lgipv~v~~d~~~L~~aL~~lk-------~~~~~DvVLIDTaGRs~kd~~lm~E 341 (436)
T PRK11889 269 KKTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFK-------EEARVDYILIDTAGKNYRASETVEE 341 (436)
T ss_pred CCcEEEEecCCcchHHHHHHHHHhhhcCCcEEecCCHHHHHHHHHHHH-------hccCCCEEEEeCccccCcCHHHHHH
Confidence 456777876653 333444454556777776666666554442110 1125899999974222222333444
Q ss_pred HhccC--CCCCCcEEEEeCCCcH---HHHHHHH-HcCCceEEe
Q 026776 106 IKDSS--ALREIPVVIMSSENIL---ARIDRCL-EDGAEDFIV 142 (233)
Q Consensus 106 Lr~~~--~~~~~piIvlt~~~~~---~~~~~al-~~Ga~dyL~ 142 (233)
+++.. ..+.-.++++++.... ....+.+ ..|.++++.
T Consensus 342 L~~~lk~~~PdevlLVLsATtk~~d~~~i~~~F~~~~idglI~ 384 (436)
T PRK11889 342 MIETMGQVEPDYICLTLSASMKSKDMIEIITNFKDIHIDGIVF 384 (436)
T ss_pred HHHHHhhcCCCeEEEEECCccChHHHHHHHHHhcCCCCCEEEE
Confidence 43211 1113345556543322 2333343 357777754
No 214
>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]
Probab=68.68 E-value=39 Score=29.41 Aligned_cols=60 Identities=23% Similarity=0.148 Sum_probs=40.3
Q ss_pred EEEEeCCHHHHHHHHHHHhhc--CC---EE-EEECCHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCCCCCHHHH
Q 026776 32 VLAVDDSFVDRKVIERLLTIS--SC---KV-TAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYEL 102 (233)
Q Consensus 32 ILIVddd~~~~~~l~~~L~~~--g~---~v-~~a~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp~~~g~~l 102 (233)
|+++|-|..+.+.=..++... || +| ....+|-..++.+ ....+|+||+|..-|.+.+..+
T Consensus 148 i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl~~~-----------~~~~~dVii~dssdpvgpa~~l 213 (337)
T KOG1562|consen 148 ILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFLFLEDL-----------KENPFDVIITDSSDPVGPACAL 213 (337)
T ss_pred eeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHHHHHHh-----------ccCCceEEEEecCCccchHHHH
Confidence 777777777777766666542 33 33 2345777777766 4567899999988887776553
No 215
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=68.27 E-value=20 Score=33.22 Aligned_cols=57 Identities=18% Similarity=0.214 Sum_probs=42.0
Q ss_pred CCcccEEEEcCCCCCC-CHHHHHHHHhccCCCCCCcEEEEeCCCcHHHHHHHHHcCCceEE
Q 026776 82 GLKVDLIITDYCMPGM-TGYELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFI 141 (233)
Q Consensus 82 ~~~~DlvllD~~mp~~-~g~~ll~~Lr~~~~~~~~piIvlt~~~~~~~~~~al~~Ga~dyL 141 (233)
....|+|++|..-+.. .-.+++++||+..+ ++|+|+ -.-.+.+....++++|++.+-
T Consensus 235 ~aGVd~i~~D~a~g~~~~~~~~i~~i~~~~~--~~~vi~-g~~~t~~~~~~l~~~G~d~i~ 292 (475)
T TIGR01303 235 DAGVDVLVIDTAHGHQVKMISAIKAVRALDL--GVPIVA-GNVVSAEGVRDLLEAGANIIK 292 (475)
T ss_pred HhCCCEEEEeCCCCCcHHHHHHHHHHHHHCC--CCeEEE-eccCCHHHHHHHHHhCCCEEE
Confidence 3468999999987543 35678899987654 777776 224567888899999998764
No 216
>PF03808 Glyco_tran_WecB: Glycosyl transferase WecB/TagA/CpsF family; InterPro: IPR004629 The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in Enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.; GO: 0009058 biosynthetic process
Probab=68.07 E-value=23 Score=27.82 Aligned_cols=71 Identities=7% Similarity=0.101 Sum_probs=50.0
Q ss_pred CCCcEEEEEeCCHHHHHHHHHHHhhc--CCEEEEECCH-------HHHHHHhhhhhhhhccCCCCCcccEEEEcCCCCCC
Q 026776 27 TEEVHVLAVDDSFVDRKVIERLLTIS--SCKVTAVDSG-------RRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGM 97 (233)
Q Consensus 27 ~~~~~ILIVddd~~~~~~l~~~L~~~--g~~v~~a~~~-------~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp~~ 97 (233)
.+..+|.++...+...+.+.+.|+.. |..+..+.++ ++.++.+ ....+|+|++-+.+|..
T Consensus 46 ~~~~~ifllG~~~~~~~~~~~~l~~~yP~l~ivg~~~g~f~~~~~~~i~~~I-----------~~~~pdiv~vglG~PkQ 114 (172)
T PF03808_consen 46 QRGKRIFLLGGSEEVLEKAAANLRRRYPGLRIVGYHHGYFDEEEEEAIINRI-----------NASGPDIVFVGLGAPKQ 114 (172)
T ss_pred HcCCeEEEEeCCHHHHHHHHHHHHHHCCCeEEEEecCCCCChhhHHHHHHHH-----------HHcCCCEEEEECCCCHH
Confidence 35679999999999988888888765 5566544332 3334444 45689999999998876
Q ss_pred CHHHHHHHHhccC
Q 026776 98 TGYELLKKIKDSS 110 (233)
Q Consensus 98 ~g~~ll~~Lr~~~ 110 (233)
. .++...++..
T Consensus 115 E--~~~~~~~~~l 125 (172)
T PF03808_consen 115 E--RWIARHRQRL 125 (172)
T ss_pred H--HHHHHHHHHC
Confidence 6 4566666543
No 217
>PRK03708 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=68.05 E-value=69 Score=27.35 Aligned_cols=106 Identities=16% Similarity=0.210 Sum_probs=54.4
Q ss_pred cEEEEEeC--C---HHHHHHHHHHHhhcCCEEEEECCHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCCCCCHHHHHH
Q 026776 30 VHVLAVDD--S---FVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLK 104 (233)
Q Consensus 30 ~~ILIVdd--d---~~~~~~l~~~L~~~g~~v~~a~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp~~~g~~ll~ 104 (233)
|||.|+-. . ......+.++|++.|+++.......+........ .........+|+||+ -|.|| .+++
T Consensus 1 m~v~iv~~~~k~~~~~~~~~I~~~L~~~g~~v~v~~~~~~~~~~~~~~---~~~~~~~~~~d~vi~----iGGDG-TlL~ 72 (277)
T PRK03708 1 MRFGIVARRDKEEALKLAYRVYDFLKVSGYEVVVDSETYEHLPEFSEE---DVLPLEEMDVDFIIA----IGGDG-TILR 72 (277)
T ss_pred CEEEEEecCCCHHHHHHHHHHHHHHHHCCCEEEEecchhhhcCccccc---ccccccccCCCEEEE----EeCcH-HHHH
Confidence 46777622 2 2334456666778888887754322221110000 000001235787776 36677 3555
Q ss_pred HHhccCCCCCCcEEEEeCCCcHHHHHHHHHcCCceEEeCCCCHHHHHHHHHHHhh
Q 026776 105 KIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVKLSDVKRIKDYLTR 159 (233)
Q Consensus 105 ~Lr~~~~~~~~piIvlt~~~~~~~~~~al~~Ga~dyL~KP~~~~eL~~~~~~l~~ 159 (233)
.++ ... ..+||+.+... -.+|+. .++++++...+..+.+
T Consensus 73 a~~-~~~-~~~pi~gIn~G-------------~lGFl~-~~~~~~~~~~l~~i~~ 111 (277)
T PRK03708 73 IEH-KTK-KDIPILGINMG-------------TLGFLT-EVEPEETFFALSRLLE 111 (277)
T ss_pred HHH-hcC-CCCeEEEEeCC-------------CCCccc-cCCHHHHHHHHHHHHc
Confidence 555 322 37888877542 234443 5566777666666553
No 218
>PRK14098 glycogen synthase; Provisional
Probab=67.65 E-value=90 Score=28.87 Aligned_cols=68 Identities=13% Similarity=0.090 Sum_probs=40.0
Q ss_pred ccEEEEcCCCCCCCHHHHHHHHhccCCCCCCcEEEEeCCCcHHHHHHHHHcCCceEEeCCCCHHHHHHHHHHHh
Q 026776 85 VDLIITDYCMPGMTGYELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVKLSDVKRIKDYLT 158 (233)
Q Consensus 85 ~DlvllD~~mp~~~g~~ll~~Lr~~~~~~~~piIvlt~~~~~~~~~~al~~Ga~dyL~KP~~~~eL~~~~~~l~ 158 (233)
.|+.++=- ..+.-|+..+..++. .+|+|+....+..+.+......|..+|+..+.+.++|...+..+.
T Consensus 382 aDi~l~PS-~~E~~Gl~~lEAma~-----G~ppVv~~~GGl~d~v~~~~~~~~~G~l~~~~d~~~la~ai~~~l 449 (489)
T PRK14098 382 LDMLLMPG-KIESCGMLQMFAMSY-----GTIPVAYAGGGIVETIEEVSEDKGSGFIFHDYTPEALVAKLGEAL 449 (489)
T ss_pred CCEEEeCC-CCCCchHHHHHHHhC-----CCCeEEecCCCCceeeecCCCCCCceeEeCCCCHHHHHHHHHHHH
Confidence 57777532 234567777777763 445554433233222222222367899999999999977666543
No 219
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=67.32 E-value=80 Score=28.64 Aligned_cols=122 Identities=13% Similarity=0.032 Sum_probs=61.2
Q ss_pred CcEEEEEeCCHH---HHHHHHHHHhhcCCEEEEECCHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCCCCCHHHHHHH
Q 026776 29 EVHVLAVDDSFV---DRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKK 105 (233)
Q Consensus 29 ~~~ILIVddd~~---~~~~l~~~L~~~g~~v~~a~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp~~~g~~ll~~ 105 (233)
..+|.+|+-|+. ..+.++.+-...++.+..+.+..+..+.+.... ....+|+||+|..=-....-+.+.+
T Consensus 234 g~~V~lItaDtyR~gAveQLk~yae~lgvpv~~~~dp~dL~~al~~l~-------~~~~~D~VLIDTAGr~~~d~~~l~E 306 (407)
T PRK12726 234 NRTVGFITTDTFRSGAVEQFQGYADKLDVELIVATSPAELEEAVQYMT-------YVNCVDHILIDTVGRNYLAEESVSE 306 (407)
T ss_pred CCeEEEEeCCccCccHHHHHHHHhhcCCCCEEecCCHHHHHHHHHHHH-------hcCCCCEEEEECCCCCccCHHHHHH
Confidence 357888877653 244566666666766666677766655442110 1135899999984222122344444
Q ss_pred HhccCC--CCCCcEEEEeCCCcHHHHHHHH----HcCCceEE-eCCCCHHHHHHHHHHH
Q 026776 106 IKDSSA--LREIPVVIMSSENILARIDRCL----EDGAEDFI-VKPVKLSDVKRIKDYL 157 (233)
Q Consensus 106 Lr~~~~--~~~~piIvlt~~~~~~~~~~al----~~Ga~dyL-~KP~~~~eL~~~~~~l 157 (233)
|+.... .+...++++++........+.+ ..+.+.++ +|=.....+-.++..+
T Consensus 307 L~~l~~~~~p~~~~LVLsag~~~~d~~~i~~~f~~l~i~glI~TKLDET~~~G~~Lsv~ 365 (407)
T PRK12726 307 ISAYTDVVHPDLTCFTFSSGMKSADVMTILPKLAEIPIDGFIITKMDETTRIGDLYTVM 365 (407)
T ss_pred HHHHhhccCCceEEEECCCcccHHHHHHHHHhcCcCCCCEEEEEcccCCCCccHHHHHH
Confidence 443221 1133344555444444443333 34666764 4433333344444444
No 220
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=67.22 E-value=25 Score=32.87 Aligned_cols=58 Identities=19% Similarity=0.296 Sum_probs=39.9
Q ss_pred CCcccEEEEcCCCCC-CCHHHHHHHHhccCCCCCCcEEEEeCCCcHHHHHHHHHcCCceEEe
Q 026776 82 GLKVDLIITDYCMPG-MTGYELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIV 142 (233)
Q Consensus 82 ~~~~DlvllD~~mp~-~~g~~ll~~Lr~~~~~~~~piIvlt~~~~~~~~~~al~~Ga~dyL~ 142 (233)
....|+|.+|..-.. ..-++++++||+..+ ..+||+ ..-.+.+.+..++++|||....
T Consensus 258 ~ag~d~i~iD~~~g~~~~~~~~i~~ik~~~p--~~~vi~-g~v~t~e~a~~a~~aGaD~i~v 316 (505)
T PLN02274 258 KAGVDVVVLDSSQGDSIYQLEMIKYIKKTYP--ELDVIG-GNVVTMYQAQNLIQAGVDGLRV 316 (505)
T ss_pred HcCCCEEEEeCCCCCcHHHHHHHHHHHHhCC--CCcEEE-ecCCCHHHHHHHHHcCcCEEEE
Confidence 346899999984221 123488999998644 555543 3345677888999999998754
No 221
>PF14097 SpoVAE: Stage V sporulation protein AE1
Probab=67.18 E-value=62 Score=25.66 Aligned_cols=84 Identities=13% Similarity=0.199 Sum_probs=56.1
Q ss_pred EEEEeCCHHHHHHHHHHHhhcCCEEEEEC-------CHHHHHHHhhhhhhhhccCCCCCcccEEEEcC-CCCC-CCHHHH
Q 026776 32 VLAVDDSFVDRKVIERLLTISSCKVTAVD-------SGRRALQFLGLDEEQSINGFDGLKVDLIITDY-CMPG-MTGYEL 102 (233)
Q Consensus 32 ILIVddd~~~~~~l~~~L~~~g~~v~~a~-------~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~-~mp~-~~g~~l 102 (233)
|||=|.|...++.++..-++.|.++...+ ++++.++++.. ..+.|=+|+.|- ...+ ..|-++
T Consensus 3 IlvTDGD~~A~ravE~aa~~iGgRCIS~S~GNPT~lsG~elV~lIk~---------a~~DPV~VMfDD~G~~g~G~GE~A 73 (180)
T PF14097_consen 3 ILVTDGDEYAKRAVEIAAKNIGGRCISQSAGNPTPLSGEELVELIKQ---------APHDPVLVMFDDKGFIGEGPGEQA 73 (180)
T ss_pred EEEECChHHHHHHHHHHHHHhCcEEEeccCCCCCcCCHHHHHHHHHh---------CCCCCEEEEEeCCCCCCCCccHHH
Confidence 45556788888888888888898887654 78899888843 233455666654 3333 457888
Q ss_pred HHHHhccCCCCCCcEEEEeCCC
Q 026776 103 LKKIKDSSALREIPVVIMSSEN 124 (233)
Q Consensus 103 l~~Lr~~~~~~~~piIvlt~~~ 124 (233)
++.+-.++...-+-+|+++++.
T Consensus 74 l~~v~~h~~IeVLG~iAVASnT 95 (180)
T PF14097_consen 74 LEYVANHPDIEVLGAIAVASNT 95 (180)
T ss_pred HHHHHcCCCceEEEEEEEEecC
Confidence 8888776644445556665543
No 222
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=66.60 E-value=64 Score=25.69 Aligned_cols=83 Identities=16% Similarity=0.139 Sum_probs=50.0
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhcCCE--EE-EECCHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCCCCCHHHHHHHH
Q 026776 30 VHVLAVDDSFVDRKVIERLLTISSCK--VT-AVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKKI 106 (233)
Q Consensus 30 ~~ILIVddd~~~~~~l~~~L~~~g~~--v~-~a~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp~~~g~~ll~~L 106 (233)
-+|..||.++...+.+++.++..++. +. ...+..+++..+.. ....+|+|++|--.......+++..+
T Consensus 73 ~~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~~~l~~~~~---------~~~~~dvv~~DPPy~~~~~~~~l~~l 143 (189)
T TIGR00095 73 KVAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSALRALKFLAK---------KPTFDNVIYLDPPFFNGALQALLELC 143 (189)
T ss_pred CEEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHHHHHHHhhc---------cCCCceEEEECcCCCCCcHHHHHHHH
Confidence 37999999999999998888777652 32 23344444443310 12247999999755444445566666
Q ss_pred hccCCCCCCcEEEEe
Q 026776 107 KDSSALREIPVVIMS 121 (233)
Q Consensus 107 r~~~~~~~~piIvlt 121 (233)
....-...--+|++-
T Consensus 144 ~~~~~l~~~~iiv~E 158 (189)
T TIGR00095 144 ENNWILEDTVLIVVE 158 (189)
T ss_pred HHCCCCCCCeEEEEE
Confidence 554333344455543
No 223
>COG2200 Rtn c-di-GMP phosphodiesterase class I (EAL domain) [Signal transduction mechanisms]
Probab=66.39 E-value=77 Score=26.51 Aligned_cols=98 Identities=15% Similarity=0.237 Sum_probs=62.8
Q ss_pred HHHHHhhcCCEEEE--ECCHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCC-----CCCHHHHHHHHhccCCCCCCcE
Q 026776 45 IERLLTISSCKVTA--VDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMP-----GMTGYELLKKIKDSSALREIPV 117 (233)
Q Consensus 45 l~~~L~~~g~~v~~--a~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp-----~~~g~~ll~~Lr~~~~~~~~pi 117 (233)
+-..|+..|+.+.. +.+|-..+..+ ...++|.|=+|-.+- +.....+++.|-.....-.+.+
T Consensus 141 ~l~~L~~~G~~ialDDFGtG~ssl~~L-----------~~l~~d~iKID~~fi~~i~~~~~~~~iv~~iv~la~~l~~~v 209 (256)
T COG2200 141 LLRQLRELGVRIALDDFGTGYSSLSYL-----------KRLPPDILKIDRSFVRDLETDARDQAIVRAIVALAHKLGLTV 209 (256)
T ss_pred HHHHHHHCCCeEEEECCCCCHHHHHHH-----------hhCCCCeEEECHHHHhhcccCcchHHHHHHHHHHHHHCCCEE
Confidence 44456778876654 88888889888 567899999987543 2233455665544332123444
Q ss_pred EEEeCCCcHHHHHHHHHcCCc----eEEeCCCCHHHHHHHH
Q 026776 118 VIMSSENILARIDRCLEDGAE----DFIVKPVKLSDVKRIK 154 (233)
Q Consensus 118 Ivlt~~~~~~~~~~al~~Ga~----dyL~KP~~~~eL~~~~ 154 (233)
|+ -+-.+.+....+.+.|++ .|+.||...+++....
T Consensus 210 va-EGVEt~~ql~~L~~~G~~~~QGylf~~P~~~~~~~~~~ 249 (256)
T COG2200 210 VA-EGVETEEQLDLLRELGCDYLQGYLFSRPLPADALDALL 249 (256)
T ss_pred EE-eecCCHHHHHHHHHcCCCeEeeccccCCCCHHHHHHHH
Confidence 43 233456677777889987 3588899887765543
No 224
>PF04131 NanE: Putative N-acetylmannosamine-6-phosphate epimerase; InterPro: IPR007260 This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilization pathway found mainly in pathogenic bacteria for the reaction: N-acyl-D-glucosamine 6-phosphate = N-acyl-D-mannosamine 6-phosphate It is probably encoded by the yhcJ gene [].; GO: 0047465 N-acylglucosamine-6-phosphate 2-epimerase activity, 0006051 N-acetylmannosamine metabolic process; PDB: 1Y0E_B 3IGS_A 1YXY_A 3Q58_B.
Probab=66.32 E-value=69 Score=25.90 Aligned_cols=69 Identities=20% Similarity=0.316 Sum_probs=46.8
Q ss_pred ECCHHHHHHHhhhhhhhhccCCCCCcccEEEEcC------CCCCCCHHHHHHHHhccCCCCCCcEEEEeCCCcHHHHHHH
Q 026776 59 VDSGRRALQFLGLDEEQSINGFDGLKVDLIITDY------CMPGMTGYELLKKIKDSSALREIPVVIMSSENILARIDRC 132 (233)
Q Consensus 59 a~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~------~mp~~~g~~ll~~Lr~~~~~~~~piIvlt~~~~~~~~~~a 132 (233)
+.+.+|++.... ..+|+|=.-+ .......++++++|.+. .+|+|.=......+.+.++
T Consensus 99 ist~ee~~~A~~------------~G~D~I~TTLsGYT~~t~~~~pD~~lv~~l~~~----~~pvIaEGri~tpe~a~~a 162 (192)
T PF04131_consen 99 ISTLEEAINAAE------------LGFDIIGTTLSGYTPYTKGDGPDFELVRELVQA----DVPVIAEGRIHTPEQAAKA 162 (192)
T ss_dssp -SSHHHHHHHHH------------TT-SEEE-TTTTSSTTSTTSSHHHHHHHHHHHT----TSEEEEESS--SHHHHHHH
T ss_pred cCCHHHHHHHHH------------cCCCEEEcccccCCCCCCCCCCCHHHHHHHHhC----CCcEeecCCCCCHHHHHHH
Confidence 568888888763 3478776532 11233578999999874 6788877777889999999
Q ss_pred HHcCCceEEeC
Q 026776 133 LEDGAEDFIVK 143 (233)
Q Consensus 133 l~~Ga~dyL~K 143 (233)
+++||+.++.-
T Consensus 163 l~~GA~aVVVG 173 (192)
T PF04131_consen 163 LELGAHAVVVG 173 (192)
T ss_dssp HHTT-SEEEE-
T ss_pred HhcCCeEEEEC
Confidence 99999999764
No 225
>cd05014 SIS_Kpsf KpsF-like protein. KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose 5-phosphate to arabinose 5-phosphate. This is the second step in the CMP-Kdo biosynthesis pathway.
Probab=66.15 E-value=33 Score=24.93 Aligned_cols=91 Identities=14% Similarity=0.060 Sum_probs=53.1
Q ss_pred eCCHHHHHHHHHHHhhcCCEEEEECCHHHHHHHhhhhhhhhccCCCCCcccEEEE-cCCCCCCCHHHHHHHHhccCCCCC
Q 026776 36 DDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIIT-DYCMPGMTGYELLKKIKDSSALRE 114 (233)
Q Consensus 36 ddd~~~~~~l~~~L~~~g~~v~~a~~~~~al~~l~~~~~~~~~~~~~~~~Dlvll-D~~mp~~~g~~ll~~Lr~~~~~~~ 114 (233)
.......+.+...|...|..+....+.......+. .-.+-|++|+ ...=...+-.++++..|++ .
T Consensus 9 G~S~~~a~~~~~~l~~~g~~~~~~~~~~~~~~~~~----------~~~~~d~vi~iS~sG~t~~~~~~~~~a~~~----g 74 (128)
T cd05014 9 GKSGHIARKIAATLSSTGTPAFFLHPTEALHGDLG----------MVTPGDVVIAISNSGETDELLNLLPHLKRR----G 74 (128)
T ss_pred cHhHHHHHHHHHHhhcCCCceEEcccchhhccccC----------cCCCCCEEEEEeCCCCCHHHHHHHHHHHHC----C
Confidence 34455666777777777877776655432222111 1122355444 4333334567788888765 6
Q ss_pred CcEEEEeCCCcHHHHHHHHHcCCceEEeCCC
Q 026776 115 IPVVIMSSENILARIDRCLEDGAEDFIVKPV 145 (233)
Q Consensus 115 ~piIvlt~~~~~~~~~~al~~Ga~dyL~KP~ 145 (233)
.++|.+|...+.... ..++.+|.-|.
T Consensus 75 ~~vi~iT~~~~s~la-----~~ad~~l~~~~ 100 (128)
T cd05014 75 APIIAITGNPNSTLA-----KLSDVVLDLPV 100 (128)
T ss_pred CeEEEEeCCCCCchh-----hhCCEEEECCC
Confidence 799999998764433 23666666553
No 226
>COG0626 MetC Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism]
Probab=65.06 E-value=39 Score=30.52 Aligned_cols=97 Identities=21% Similarity=0.169 Sum_probs=58.4
Q ss_pred CcEEEEEeC-CHHHHHHHHHHHhhcCCEEEEECC--HHHHHHHhhhhhhhhccCCCCCcccEEEEcCCC-CC---CCHHH
Q 026776 29 EVHVLAVDD-SFVDRKVIERLLTISSCKVTAVDS--GRRALQFLGLDEEQSINGFDGLKVDLIITDYCM-PG---MTGYE 101 (233)
Q Consensus 29 ~~~ILIVdd-d~~~~~~l~~~L~~~g~~v~~a~~--~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~m-p~---~~g~~ 101 (233)
.-+|++.+| --..+..+..+++++|+++..+++ ..+..+.+ ...+.++|+++.-- |- .|--.
T Consensus 102 GD~vl~~~~~YG~t~~~~~~~l~~~gi~~~~~d~~~~~~~~~~~-----------~~~~tk~v~lEtPsNP~l~v~DI~~ 170 (396)
T COG0626 102 GDHVLLPDDLYGGTYRLFEKILQKFGVEVTFVDPGDDEALEAAI-----------KEPNTKLVFLETPSNPLLEVPDIPA 170 (396)
T ss_pred CCEEEecCCccchHHHHHHHHHHhcCeEEEEECCCChHHHHHHh-----------cccCceEEEEeCCCCcccccccHHH
Confidence 467888887 355677788888999999998774 44455544 22368899997622 22 23333
Q ss_pred HHHHHhccCCCCCCcEEEEeCCCcHHHHHHHHHcCCceEE
Q 026776 102 LLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFI 141 (233)
Q Consensus 102 ll~~Lr~~~~~~~~piIvlt~~~~~~~~~~al~~Ga~dyL 141 (233)
+.+..++. . .++++-..-......+.++.|||=++
T Consensus 171 i~~~A~~~----g-~~vvVDNTfatP~~q~PL~~GaDIVv 205 (396)
T COG0626 171 IARLAKAY----G-ALVVVDNTFATPVLQRPLELGADIVV 205 (396)
T ss_pred HHHHHHhc----C-CEEEEECCcccccccChhhcCCCEEE
Confidence 33333332 2 34444333344566778888877554
No 227
>cd01568 QPRTase_NadC Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=65.06 E-value=25 Score=29.85 Aligned_cols=95 Identities=21% Similarity=0.162 Sum_probs=54.6
Q ss_pred EEEEEeCCHHHHHHH----HHHHhhcC---CEEEEECCHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCCCCCHHHHH
Q 026776 31 HVLAVDDSFVDRKVI----ERLLTISS---CKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELL 103 (233)
Q Consensus 31 ~ILIVddd~~~~~~l----~~~L~~~g---~~v~~a~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp~~~g~~ll 103 (233)
.|||-|++......+ ...-+..+ .-...+.+.+++.+.+. ..+|+|.+|-.-| ..--+++
T Consensus 153 ~ilikdnHi~~~g~~~~~v~~~r~~~~~~~~I~vev~t~eea~~A~~------------~gaD~I~ld~~~~-e~l~~~v 219 (269)
T cd01568 153 AVLIKDNHIAAAGGITEAVKRARAAAPFEKKIEVEVETLEEAEEALE------------AGADIIMLDNMSP-EELKEAV 219 (269)
T ss_pred eeeecHhHHHHhCCHHHHHHHHHHhCCCCCeEEEecCCHHHHHHHHH------------cCCCEEEECCCCH-HHHHHHH
Confidence 467777764443322 22222233 23345778888888762 3589999986443 1112233
Q ss_pred HHHhccCCCCCCcEEEEeCCCcHHHHHHHHHcCCceEEe
Q 026776 104 KKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIV 142 (233)
Q Consensus 104 ~~Lr~~~~~~~~piIvlt~~~~~~~~~~al~~Ga~dyL~ 142 (233)
+.++.. .++|+ ..++.-+.+.+.+..+.|+|.+-.
T Consensus 220 ~~i~~~---~~i~i-~asGGIt~~ni~~~a~~Gad~Isv 254 (269)
T cd01568 220 KLLKGL---PRVLL-EASGGITLENIRAYAETGVDVIST 254 (269)
T ss_pred HHhccC---CCeEE-EEECCCCHHHHHHHHHcCCCEEEE
Confidence 334432 24554 445556678888899999998753
No 228
>PLN02716 nicotinate-nucleotide diphosphorylase (carboxylating)
Probab=64.98 E-value=69 Score=27.91 Aligned_cols=100 Identities=9% Similarity=-0.008 Sum_probs=55.0
Q ss_pred EEEEeCCHHHHHHHHHHH-------hhcCC---EEEEECCHHHHHHHhhhhhhhhccCCCCCcccEEEEcCC--CCC---
Q 026776 32 VLAVDDSFVDRKVIERLL-------TISSC---KVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYC--MPG--- 96 (233)
Q Consensus 32 ILIVddd~~~~~~l~~~L-------~~~g~---~v~~a~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~--mp~--- 96 (233)
|||-|++-...-.+...+ +..++ -.+.+++.+++.+.+..... ....+|+|++|-. -|.
T Consensus 173 vLIKdNHi~~~G~i~~av~~~r~~~~~~~~~~kIeVEv~tleea~ea~~~~~~------~~agaDiImLDnm~~~~~~~~ 246 (308)
T PLN02716 173 VMIKDNHIAAAGGITNAVQSADKYLEEKGLSMKIEVETRTLEEVKEVLEYLSD------TKTSLTRVMLDNMVVPLENGD 246 (308)
T ss_pred EEEcHhHHHhhCCHHHHHHHHHHhhhhcCCCeeEEEEECCHHHHHHHHHhccc------ccCCCCEEEeCCCcccccccC
Confidence 777777655443333322 22233 23457899999888731000 1145899999943 111
Q ss_pred CCHHHHHHHHhccCCCCCCcEEEEeCCCcHHHHHHHHHcCCceE
Q 026776 97 MTGYELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDF 140 (233)
Q Consensus 97 ~~g~~ll~~Lr~~~~~~~~piIvlt~~~~~~~~~~al~~Ga~dy 140 (233)
.+--++-+.+.... ....+-.++.-+.+.+.+....|+|-.
T Consensus 247 ~~~e~l~~av~~~~---~~~~lEaSGGIt~~ni~~yA~tGVD~I 287 (308)
T PLN02716 247 VDVSMLKEAVELIN---GRFETEASGNVTLDTVHKIGQTGVTYI 287 (308)
T ss_pred CCHHHHHHHHHhhC---CCceEEEECCCCHHHHHHHHHcCCCEE
Confidence 13333333333222 223466777778888888888898754
No 229
>PRK13170 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=64.43 E-value=51 Score=26.40 Aligned_cols=35 Identities=6% Similarity=0.065 Sum_probs=28.6
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhcCCEEEEECCHHH
Q 026776 30 VHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRR 64 (233)
Q Consensus 30 ~~ILIVddd~~~~~~l~~~L~~~g~~v~~a~~~~~ 64 (233)
|+|+|||-.--+...+.+.|+..|+++..+.+.++
T Consensus 1 m~i~iid~g~gn~~s~~~~l~~~g~~~~~v~~~~~ 35 (196)
T PRK13170 1 MNVVIIDTGCANLSSVKFAIERLGYEPVVSRDPDV 35 (196)
T ss_pred CeEEEEeCCCchHHHHHHHHHHCCCeEEEECCHHH
Confidence 57999997766777788899999999999887643
No 230
>PRK04302 triosephosphate isomerase; Provisional
Probab=64.34 E-value=78 Score=25.85 Aligned_cols=43 Identities=14% Similarity=0.251 Sum_probs=31.9
Q ss_pred HHHHHHHhccCCCCCCcEEEEeCCCcHHHHHHHHHcCCceEEeCC
Q 026776 100 YELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKP 144 (233)
Q Consensus 100 ~~ll~~Lr~~~~~~~~piIvlt~~~~~~~~~~al~~Ga~dyL~KP 144 (233)
.++++.+|+... ++|++.-.+-...+.+..+++.|+|+++.-.
T Consensus 161 ~~~~~~ir~~~~--~~pvi~GggI~~~e~~~~~~~~gadGvlVGs 203 (223)
T PRK04302 161 EDAVEAVKKVNP--DVKVLCGAGISTGEDVKAALELGADGVLLAS 203 (223)
T ss_pred HHHHHHHHhccC--CCEEEEECCCCCHHHHHHHHcCCCCEEEEeh
Confidence 355666776432 6788877776778888888999999998654
No 231
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=63.89 E-value=27 Score=32.03 Aligned_cols=56 Identities=16% Similarity=0.287 Sum_probs=41.2
Q ss_pred CcccEEEEcCCCCC-CCHHHHHHHHhccCCCCCCcEEEEeCCCcHHHHHHHHHcCCceEE
Q 026776 83 LKVDLIITDYCMPG-MTGYELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFI 141 (233)
Q Consensus 83 ~~~DlvllD~~mp~-~~g~~ll~~Lr~~~~~~~~piIvlt~~~~~~~~~~al~~Ga~dyL 141 (233)
..+|+|.+|..-.. ...++.+++||+..+ +++|++ ..-.+.+.+..++++|++.+.
T Consensus 235 aG~d~I~vd~a~g~~~~~~~~i~~i~~~~~--~~~vi~-G~v~t~~~a~~l~~aGad~i~ 291 (450)
T TIGR01302 235 AGVDVIVIDSSHGHSIYVIDSIKEIKKTYP--DLDIIA-GNVATAEQAKALIDAGADGLR 291 (450)
T ss_pred hCCCEEEEECCCCcHhHHHHHHHHHHHhCC--CCCEEE-EeCCCHHHHHHHHHhCCCEEE
Confidence 35899999985443 356778899987644 777776 334567788899999999873
No 232
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=63.70 E-value=65 Score=27.65 Aligned_cols=68 Identities=21% Similarity=0.173 Sum_probs=42.9
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhcC--C---EE-EEECCHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCCCC-----C
Q 026776 30 VHVLAVDDSFVDRKVIERLLTISS--C---KV-TAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGM-----T 98 (233)
Q Consensus 30 ~~ILIVddd~~~~~~l~~~L~~~g--~---~v-~~a~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp~~-----~ 98 (233)
-+|.+||=|+.+.+..+++|.... . ++ ....||.+.++.. ...+|+||+|..-|.. -
T Consensus 101 e~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~------------~~~fDvIi~D~tdp~gp~~~Lf 168 (282)
T COG0421 101 ERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDC------------EEKFDVIIVDSTDPVGPAEALF 168 (282)
T ss_pred ceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhC------------CCcCCEEEEcCCCCCCcccccC
Confidence 457778888888888887775432 1 22 2355666665543 2369999999987732 1
Q ss_pred HHHHHHHHhcc
Q 026776 99 GYELLKKIKDS 109 (233)
Q Consensus 99 g~~ll~~Lr~~ 109 (233)
..++.+.++..
T Consensus 169 t~eFy~~~~~~ 179 (282)
T COG0421 169 TEEFYEGCRRA 179 (282)
T ss_pred CHHHHHHHHHh
Confidence 34666666543
No 233
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=63.64 E-value=73 Score=28.58 Aligned_cols=119 Identities=11% Similarity=0.112 Sum_probs=58.6
Q ss_pred cEEEEEeCCHH---HHHHHHHHHhhcCCEEEEECCHHHHHHHhhhhhhhhccCCCCCcccEEEEcCC-CCCCCH--HHHH
Q 026776 30 VHVLAVDDSFV---DRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYC-MPGMTG--YELL 103 (233)
Q Consensus 30 ~~ILIVddd~~---~~~~l~~~L~~~g~~v~~a~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~-mp~~~g--~~ll 103 (233)
.+|.+|..|.. -.+.++.+-+..|..+..+.+..+....+. .-..+|+||+|.- +...+. .+.+
T Consensus 168 ~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~----------~l~~~DlVLIDTaG~~~~d~~l~e~L 237 (374)
T PRK14722 168 SKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALA----------ELRNKHMVLIDTIGMSQRDRTVSDQI 237 (374)
T ss_pred CeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHH----------HhcCCCEEEEcCCCCCcccHHHHHHH
Confidence 45666665543 344555555666776666665555443332 1235799999974 222222 2344
Q ss_pred HHHhccCCCCCCcEEEEeCCCcHHH---HHHHHH-c---------CCceE-EeCCCCHHHHHHHHHHHhh
Q 026776 104 KKIKDSSALREIPVVIMSSENILAR---IDRCLE-D---------GAEDF-IVKPVKLSDVKRIKDYLTR 159 (233)
Q Consensus 104 ~~Lr~~~~~~~~piIvlt~~~~~~~---~~~al~-~---------Ga~dy-L~KP~~~~eL~~~~~~l~~ 159 (233)
..+..... ..-.++++++....+. +...+. . +.+++ ++|=.....+-.++..+.+
T Consensus 238 a~L~~~~~-~~~~lLVLsAts~~~~l~evi~~f~~~~~~p~~~~~~~~~~I~TKlDEt~~~G~~l~~~~~ 306 (374)
T PRK14722 238 AMLHGADT-PVQRLLLLNATSHGDTLNEVVQAYRSAAGQPKAALPDLAGCILTKLDEASNLGGVLDTVIR 306 (374)
T ss_pred HHHhccCC-CCeEEEEecCccChHHHHHHHHHHHHhhcccccccCCCCEEEEeccccCCCccHHHHHHHH
Confidence 44433211 1223666766544433 333332 2 24555 4554433345555554443
No 234
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=63.56 E-value=62 Score=26.33 Aligned_cols=57 Identities=12% Similarity=0.214 Sum_probs=34.8
Q ss_pred CCCCCCCHHHHHHHHhccCCCCCCcEEEEeCCCcHHHHHHHHHcCCceEEeCCCCHHHHHH
Q 026776 92 YCMPGMTGYELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVKLSDVKR 152 (233)
Q Consensus 92 ~~mp~~~g~~ll~~Lr~~~~~~~~piIvlt~~~~~~~~~~al~~Ga~dyL~KP~~~~eL~~ 152 (233)
+.|-.-+.++.++.+++..+ + -+|-.-.--+.+...+++++|++ |+.-|....++.+
T Consensus 35 it~~tp~a~~~I~~l~~~~~--~-~~vGAGTVl~~e~a~~ai~aGA~-FivSP~~~~~vi~ 91 (201)
T PRK06015 35 ITLRTPAALDAIRAVAAEVE--E-AIVGAGTILNAKQFEDAAKAGSR-FIVSPGTTQELLA 91 (201)
T ss_pred EeCCCccHHHHHHHHHHHCC--C-CEEeeEeCcCHHHHHHHHHcCCC-EEECCCCCHHHHH
Confidence 34445567788888876543 3 23333334467788888999987 5555655555543
No 235
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=63.51 E-value=1.1e+02 Score=28.63 Aligned_cols=56 Identities=14% Similarity=0.297 Sum_probs=38.9
Q ss_pred CcccEEEEcCCCCCC-CHHHHHHHHhccCCCCCCcEEEEeCCCcHHHHHHHHHcCCceEE
Q 026776 83 LKVDLIITDYCMPGM-TGYELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFI 141 (233)
Q Consensus 83 ~~~DlvllD~~mp~~-~g~~ll~~Lr~~~~~~~~piIvlt~~~~~~~~~~al~~Ga~dyL 141 (233)
...|+|.+|..-... ..++.+++||+..+ .++|++ -.-.+.+.+..++++|||.+.
T Consensus 252 ag~d~i~id~a~G~s~~~~~~i~~ik~~~~--~~~v~a-G~V~t~~~a~~~~~aGad~I~ 308 (495)
T PTZ00314 252 AGVDVLVVDSSQGNSIYQIDMIKKLKSNYP--HVDIIA-GNVVTADQAKNLIDAGADGLR 308 (495)
T ss_pred CCCCEEEEecCCCCchHHHHHHHHHHhhCC--CceEEE-CCcCCHHHHHHHHHcCCCEEE
Confidence 458999999843222 23689999998643 556554 233456788899999999774
No 236
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=63.38 E-value=1.1e+02 Score=28.57 Aligned_cols=31 Identities=16% Similarity=0.213 Sum_probs=24.8
Q ss_pred CCcEEEEeCCCcHHHHHHHHHcCCceEEeCC
Q 026776 114 EIPVVIMSSENILARIDRCLEDGAEDFIVKP 144 (233)
Q Consensus 114 ~~piIvlt~~~~~~~~~~al~~Ga~dyL~KP 144 (233)
.+|+|.=.+-....++.+|+.+||+.++.=-
T Consensus 344 ~v~vIadGGi~~~~di~kAla~GA~~Vm~G~ 374 (495)
T PTZ00314 344 GVPCIADGGIKNSGDICKALALGADCVMLGS 374 (495)
T ss_pred CCeEEecCCCCCHHHHHHHHHcCCCEEEECc
Confidence 5777765566788999999999999887643
No 237
>PRK10060 RNase II stability modulator; Provisional
Probab=63.36 E-value=77 Score=30.48 Aligned_cols=101 Identities=14% Similarity=0.153 Sum_probs=65.1
Q ss_pred HHHHHHhhcCCEEEE--ECCHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCC----C-CCCHHHHHHHHhccCCCCCCc
Q 026776 44 VIERLLTISSCKVTA--VDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCM----P-GMTGYELLKKIKDSSALREIP 116 (233)
Q Consensus 44 ~l~~~L~~~g~~v~~--a~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~m----p-~~~g~~ll~~Lr~~~~~~~~p 116 (233)
.+-..|+..|+.+.. +.++...+..+ ...++|.|=+|-.+ . +.....+++.|-.....-.+.
T Consensus 545 ~~l~~L~~~G~~ialDdfGtg~ssl~~L-----------~~l~~d~iKiD~sfv~~i~~~~~~~~~v~~ii~~a~~lg~~ 613 (663)
T PRK10060 545 SVIQQFSQLGAQVHLDDFGTGYSSLSQL-----------ARFPIDAIKLDQSFVRDIHKQPVSQSLVRAIVAVAQALNLQ 613 (663)
T ss_pred HHHHHHHHCCCEEEEECCCCchhhHHHH-----------HhCCCCEEEECHHHHhccccCcchHHHHHHHHHHHHHCCCc
Confidence 334567788987766 66777778877 56689999999533 2 234455555553322211444
Q ss_pred EEEEeCCCcHHHHHHHHHcCCc----eEEeCCCCHHHHHHHHHH
Q 026776 117 VVIMSSENILARIDRCLEDGAE----DFIVKPVKLSDVKRIKDY 156 (233)
Q Consensus 117 iIvlt~~~~~~~~~~al~~Ga~----dyL~KP~~~~eL~~~~~~ 156 (233)
+| ..+-.+.+....+.+.|++ .|+.||...+++.+.+..
T Consensus 614 vi-AeGVEt~~q~~~l~~~G~d~~QGy~~~~P~~~~~~~~~l~~ 656 (663)
T PRK10060 614 VI-AEGVETAKEDAFLTKNGVNERQGFLFAKPMPAVAFERWYKR 656 (663)
T ss_pred EE-EecCCCHHHHHHHHHcCCCEEecCccCCCCCHHHHHHHHHh
Confidence 44 3445566777777788985 347899999998776543
No 238
>PRK00748 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Validated
Probab=63.36 E-value=42 Score=27.36 Aligned_cols=55 Identities=29% Similarity=0.393 Sum_probs=40.8
Q ss_pred cc-EEEEcCCCCCC-CH--HHHHHHHhccCCCCCCcEEEEeCCCcHHHHHHHHHcC-CceEEe
Q 026776 85 VD-LIITDYCMPGM-TG--YELLKKIKDSSALREIPVVIMSSENILARIDRCLEDG-AEDFIV 142 (233)
Q Consensus 85 ~D-lvllD~~mp~~-~g--~~ll~~Lr~~~~~~~~piIvlt~~~~~~~~~~al~~G-a~dyL~ 142 (233)
++ +++.|...-+. .| +++++++++.. .+|+|+-.+-.+.+++.++++.| +++++.
T Consensus 160 ~~~ii~~~~~~~g~~~G~d~~~i~~l~~~~---~ipvia~GGi~~~~di~~~~~~g~~~gv~v 219 (233)
T PRK00748 160 VKAIIYTDISRDGTLSGPNVEATRELAAAV---PIPVIASGGVSSLDDIKALKGLGAVEGVIV 219 (233)
T ss_pred CCEEEEeeecCcCCcCCCCHHHHHHHHHhC---CCCEEEeCCCCCHHHHHHHHHcCCccEEEE
Confidence 45 77777754322 33 68888888642 58888887778888999999988 998875
No 239
>PRK15484 lipopolysaccharide 1,2-N-acetylglucosaminetransferase; Provisional
Probab=63.33 E-value=1.1e+02 Score=27.06 Aligned_cols=66 Identities=11% Similarity=0.184 Sum_probs=40.8
Q ss_pred ccEEEEcCCCCCCCHHHHHHHHhccCCCCCCcEEEEeCCCcHHHHHHHHHcCCceE-EeCCCCHHHHHHHHHHHhh
Q 026776 85 VDLIITDYCMPGMTGYELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDF-IVKPVKLSDVKRIKDYLTR 159 (233)
Q Consensus 85 ~DlvllD~~mp~~~g~~ll~~Lr~~~~~~~~piIvlt~~~~~~~~~~al~~Ga~dy-L~KP~~~~eL~~~~~~l~~ 159 (233)
.|++++-....+.-|..+++.+.. .+|+|.....+ ..+.+..|..+| +..|.+.+++.+.+..+..
T Consensus 277 aDv~v~pS~~~E~f~~~~lEAma~-----G~PVI~s~~gg----~~Eiv~~~~~G~~l~~~~d~~~la~~I~~ll~ 343 (380)
T PRK15484 277 ADLVVVPSQVEEAFCMVAVEAMAA-----GKPVLASTKGG----ITEFVLEGITGYHLAEPMTSDSIISDINRTLA 343 (380)
T ss_pred CCEEEeCCCCccccccHHHHHHHc-----CCCEEEeCCCC----cHhhcccCCceEEEeCCCCHHHHHHHHHHHHc
Confidence 477776433333345556666543 77887643322 234456688888 5678899999877766554
No 240
>PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=63.20 E-value=63 Score=28.58 Aligned_cols=55 Identities=9% Similarity=0.074 Sum_probs=39.7
Q ss_pred CcccEEEEcCCCCCCC-HHHHHHHHhccCCCCCCcEEEEeCCCcHHHHHHHHHcCCceE
Q 026776 83 LKVDLIITDYCMPGMT-GYELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDF 140 (233)
Q Consensus 83 ~~~DlvllD~~mp~~~-g~~ll~~Lr~~~~~~~~piIvlt~~~~~~~~~~al~~Ga~dy 140 (233)
..+|+|++|..-.... -++++++||+..+ +++|| ...-...+.+...+++|||..
T Consensus 121 ~g~D~iviD~AhGhs~~~i~~ik~ik~~~P--~~~vI-aGNV~T~e~a~~Li~aGAD~v 176 (346)
T PRK05096 121 PALNFICIDVANGYSEHFVQFVAKAREAWP--DKTIC-AGNVVTGEMVEELILSGADIV 176 (346)
T ss_pred CCCCEEEEECCCCcHHHHHHHHHHHHHhCC--CCcEE-EecccCHHHHHHHHHcCCCEE
Confidence 3689999998765443 4788999998654 65543 334456777888889999975
No 241
>cd03813 GT1_like_3 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=63.05 E-value=95 Score=28.40 Aligned_cols=66 Identities=20% Similarity=0.263 Sum_probs=42.0
Q ss_pred cccEEEEcCCCCCCCHHHHHHHHhccCCCCCCcEEEEeCCCcHHHHHHHHHc------CCceEEeCCCCHHHHHHHHHHH
Q 026776 84 KVDLIITDYCMPGMTGYELLKKIKDSSALREIPVVIMSSENILARIDRCLED------GAEDFIVKPVKLSDVKRIKDYL 157 (233)
Q Consensus 84 ~~DlvllD~~mp~~~g~~ll~~Lr~~~~~~~~piIvlt~~~~~~~~~~al~~------Ga~dyL~KP~~~~eL~~~~~~l 157 (233)
..|++++-.. .+.-|..+++.+-. .+|+|. |..+.. .+.+.. |..+++..|.+.+++.+.+..+
T Consensus 370 ~aDv~vlpS~-~Eg~p~~vlEAma~-----G~PVVa-td~g~~---~elv~~~~~~~~g~~G~lv~~~d~~~la~ai~~l 439 (475)
T cd03813 370 KLDVLVLTSI-SEGQPLVILEAMAA-----GIPVVA-TDVGSC---RELIEGADDEALGPAGEVVPPADPEALARAILRL 439 (475)
T ss_pred hCCEEEeCch-hhcCChHHHHHHHc-----CCCEEE-CCCCCh---HHHhcCCcccccCCceEEECCCCHHHHHHHHHHH
Confidence 3577776432 23446667777653 678775 443332 233333 6789999999999998777666
Q ss_pred hh
Q 026776 158 TR 159 (233)
Q Consensus 158 ~~ 159 (233)
..
T Consensus 440 l~ 441 (475)
T cd03813 440 LK 441 (475)
T ss_pred hc
Confidence 43
No 242
>PRK01911 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=62.99 E-value=1e+02 Score=26.63 Aligned_cols=109 Identities=14% Similarity=0.099 Sum_probs=53.9
Q ss_pred cEEEEEe--CCHHH---HHHHHHHHhhcCCEEEEECCHHHHHHHhhh--h-hhhh--ccCCCCCcccEEEEcCCCCCCCH
Q 026776 30 VHVLAVD--DSFVD---RKVIERLLTISSCKVTAVDSGRRALQFLGL--D-EEQS--INGFDGLKVDLIITDYCMPGMTG 99 (233)
Q Consensus 30 ~~ILIVd--dd~~~---~~~l~~~L~~~g~~v~~a~~~~~al~~l~~--~-~~~~--~~~~~~~~~DlvllD~~mp~~~g 99 (233)
|+|.|+- +.+.. ...+..+|++.|+++.........+..-.. . .... ... ....+|+||+ -|.||
T Consensus 1 m~igii~~~~~~~~~~~~~~i~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~dlvi~----lGGDG 75 (292)
T PRK01911 1 MKIAIFGQTYQESASPYIQELFDELEERGAEVLIEEKFLDFLKQDLKFHPSYDTFSDNEE-LDGSADMVIS----IGGDG 75 (292)
T ss_pred CEEEEEeCCCCHHHHHHHHHHHHHHHHCCCEEEEecchhhhhccccccccccccccchhh-cccCCCEEEE----ECCcH
Confidence 4566662 22333 344555677888888775543322210000 0 0000 000 1124688776 36677
Q ss_pred HHHHHHHhccCCCCCCcEEEEeCCCcHHHHHHHHHcCCceEEeCCCCHHHHHHHHHHHhh
Q 026776 100 YELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVKLSDVKRIKDYLTR 159 (233)
Q Consensus 100 ~~ll~~Lr~~~~~~~~piIvlt~~~~~~~~~~al~~Ga~dyL~KP~~~~eL~~~~~~l~~ 159 (233)
.+++..|.... ..+||+-+-. |-.+||. .++++++...++.+.+
T Consensus 76 -T~L~aa~~~~~-~~~PilGIN~-------------G~lGFLt-~~~~~~~~~~l~~i~~ 119 (292)
T PRK01911 76 -TFLRTATYVGN-SNIPILGINT-------------GRLGFLA-TVSKEEIEETIDELLN 119 (292)
T ss_pred -HHHHHHHHhcC-CCCCEEEEec-------------CCCCccc-ccCHHHHHHHHHHHHc
Confidence 45666665432 3788886632 3344554 4556666666655543
No 243
>PRK02290 3-dehydroquinate synthase; Provisional
Probab=62.98 E-value=68 Score=28.37 Aligned_cols=69 Identities=13% Similarity=0.162 Sum_probs=45.3
Q ss_pred cEEEEcCCCCC-CCHHHHHHHHhccCCCCCCcEEEEeCCC-cHHHHHHHHHcCCceEEeCCCCHHHHHHHHHHHhh
Q 026776 86 DLIITDYCMPG-MTGYELLKKIKDSSALREIPVVIMSSEN-ILARIDRCLEDGAEDFIVKPVKLSDVKRIKDYLTR 159 (233)
Q Consensus 86 DlvllD~~mp~-~~g~~ll~~Lr~~~~~~~~piIvlt~~~-~~~~~~~al~~Ga~dyL~KP~~~~eL~~~~~~l~~ 159 (233)
+.+|++..-.. .---.++..+ .. ...++...... +.......++.|+|+.+++|-++.++.++...+..
T Consensus 90 ~~viv~~~dW~iIPlEnlIA~~-~~----~~~l~a~v~~~~eA~~a~~~LE~G~dGVvl~~~d~~ei~~~~~~~~~ 160 (344)
T PRK02290 90 DYVIVEGRDWTIIPLENLIADL-GQ----SGKIIAGVADAEEAKLALEILEKGVDGVLLDPDDPNEIKAIVALIEE 160 (344)
T ss_pred CEEEEECCCCcEecHHHHHhhh-cC----CceEEEEeCCHHHHHHHHHHhccCCCeEEECCCCHHHHHHHHHHHhc
Confidence 55665543322 2222355555 32 44566555443 44566788899999999999999999988887765
No 244
>cd06338 PBP1_ABC_ligand_binding_like_5 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT); however their ligand specificity has not been determined experimentally.
Probab=62.88 E-value=98 Score=26.46 Aligned_cols=67 Identities=7% Similarity=-0.047 Sum_probs=41.8
Q ss_pred HHHHHHHHHhhcCCEEEEE-------CCHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCCCCCHHHHHHHHhccCCCC
Q 026776 41 DRKVIERLLTISSCKVTAV-------DSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKKIKDSSALR 113 (233)
Q Consensus 41 ~~~~l~~~L~~~g~~v~~a-------~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp~~~g~~ll~~Lr~~~~~~ 113 (233)
....+...+++.|.+|... .+....+..+ ....+|+|++.. .+.+...+++.+++...
T Consensus 157 ~~~~~~~~~~~~g~~v~~~~~~~~~~~d~~~~v~~l-----------~~~~~d~i~~~~--~~~~~~~~~~~~~~~g~-- 221 (345)
T cd06338 157 VAEGAREKAEAAGLEVVYDETYPPGTADLSPLISKA-----------KAAGPDAVVVAG--HFPDAVLLVRQMKELGY-- 221 (345)
T ss_pred HHHHHHHHHHHcCCEEEEEeccCCCccchHHHHHHH-----------HhcCCCEEEECC--cchhHHHHHHHHHHcCC--
Confidence 3455566677788777531 2334445544 345689999854 34567888999987654
Q ss_pred CCcEEEEeC
Q 026776 114 EIPVVIMSS 122 (233)
Q Consensus 114 ~~piIvlt~ 122 (233)
..+++..+.
T Consensus 222 ~~~~~~~~~ 230 (345)
T cd06338 222 NPKALYMTV 230 (345)
T ss_pred CCCEEEEec
Confidence 456665543
No 245
>TIGR03061 pip_yhgE_Nterm YhgE/Pip N-terminal domain. This family contains the N-terminal domain of a family of multiple membrane-spanning proteins of Gram-positive bacteria. One member was shown to be a host protein essential for phage infection, so many members of this family are called "phage infection protein". A separate model, TIGR03062, represents the conserved C-terminal domain. The domains are separated by regions highly variable in both length and sequence, often containing extended heptad repeats as described in model TIGR03057.
Probab=62.84 E-value=48 Score=25.59 Aligned_cols=82 Identities=13% Similarity=0.116 Sum_probs=45.5
Q ss_pred CCCCcEEEEEeCCHHH---------HHHHHHHHhhc-CCEEEEECCHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCC
Q 026776 26 DTEEVHVLAVDDSFVD---------RKVIERLLTIS-SCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMP 95 (233)
Q Consensus 26 ~~~~~~ILIVddd~~~---------~~~l~~~L~~~-g~~v~~a~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp 95 (233)
..+.+.|.|||.|... .+.+.+.|... .+.+.. .+.++|.+.+ ...+++.+|+ +|
T Consensus 40 ~~~~lpvaVVd~D~s~~~~~~~~~~s~~l~~~l~~~~~~~~~~-~~~~ea~~~l-----------~~g~~~~~iv---IP 104 (164)
T TIGR03061 40 NLDNLPVAVVNEDKGATYDGKTLNAGDDLVKELKKNDDLDWHF-VSAKEAEKGL-----------ADGKYYMVIT---IP 104 (164)
T ss_pred ccCCCeEEEEECCCCCCcCCcccchHHHHHHHHhcCCCcceEE-cCHHHHHHHh-----------HcCcEEEEEE---EC
Confidence 4567899999987654 44555555544 355443 4888888888 4556676654 35
Q ss_pred CCCHHHHHHHHhccCCCCCCcEEEEeCCC
Q 026776 96 GMTGYELLKKIKDSSALREIPVVIMSSEN 124 (233)
Q Consensus 96 ~~~g~~ll~~Lr~~~~~~~~piIvlt~~~ 124 (233)
..=.-+++....... ....+.+.+...
T Consensus 105 ~~Fs~~l~~~~~~~~--~~~~i~~~~~~~ 131 (164)
T TIGR03061 105 EDFSENATSLLDDQP--KKAQLTYKTNDA 131 (164)
T ss_pred cchhHHHHhhccCCC--CccEEEEEECCC
Confidence 432323332222222 245555555544
No 246
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=62.61 E-value=94 Score=26.19 Aligned_cols=88 Identities=17% Similarity=0.083 Sum_probs=54.9
Q ss_pred HHHHHHHHHhhcCCEE-EEECCHHHHHHHhhhhhhhhccCCCCCcccEEEEcC-C--CCCCCHHHHHHHHhccCCCCCCc
Q 026776 41 DRKVIERLLTISSCKV-TAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDY-C--MPGMTGYELLKKIKDSSALREIP 116 (233)
Q Consensus 41 ~~~~l~~~L~~~g~~v-~~a~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~-~--mp~~~g~~ll~~Lr~~~~~~~~p 116 (233)
..+.+.......|..+ ..+.+.+++.... ...+|+|-+.- + ....+ ++...++....+ ...+
T Consensus 148 ~l~~li~~a~~lGl~~lvevh~~~E~~~A~------------~~gadiIgin~rdl~~~~~d-~~~~~~l~~~~p-~~~~ 213 (260)
T PRK00278 148 QLKELLDYAHSLGLDVLVEVHDEEELERAL------------KLGAPLIGINNRNLKTFEVD-LETTERLAPLIP-SDRL 213 (260)
T ss_pred HHHHHHHHHHHcCCeEEEEeCCHHHHHHHH------------HcCCCEEEECCCCcccccCC-HHHHHHHHHhCC-CCCE
Confidence 3444444445678654 4577887775554 23467776532 1 11222 555666655332 1358
Q ss_pred EEEEeCCCcHHHHHHHHHcCCceEEe
Q 026776 117 VVIMSSENILARIDRCLEDGAEDFIV 142 (233)
Q Consensus 117 iIvlt~~~~~~~~~~al~~Ga~dyL~ 142 (233)
+|..++-.+.+.+.++++.|+++++.
T Consensus 214 vIaegGI~t~ed~~~~~~~Gad~vlV 239 (260)
T PRK00278 214 VVSESGIFTPEDLKRLAKAGADAVLV 239 (260)
T ss_pred EEEEeCCCCHHHHHHHHHcCCCEEEE
Confidence 88888888899999999999999865
No 247
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=62.56 E-value=92 Score=30.78 Aligned_cols=116 Identities=9% Similarity=-0.006 Sum_probs=60.5
Q ss_pred cEEEEEeCCHH---HHHHHHHHHhhcCCEEEEECCHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCC-CCCC--HHHHH
Q 026776 30 VHVLAVDDSFV---DRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCM-PGMT--GYELL 103 (233)
Q Consensus 30 ~~ILIVddd~~---~~~~l~~~L~~~g~~v~~a~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~m-p~~~--g~~ll 103 (233)
.+|.+|.-|.. ..+.++.+-+..|..+..+.+..+..+.+. ....+|+||+|.-= ...+ -.+.+
T Consensus 216 kkV~lit~Dt~RigA~eQL~~~a~~~gvpv~~~~~~~~l~~al~----------~~~~~D~VLIDTAGRs~~d~~l~eel 285 (767)
T PRK14723 216 DQLALLTTDSFRIGALEQLRIYGRILGVPVHAVKDAADLRFALA----------ALGDKHLVLIDTVGMSQRDRNVSEQI 285 (767)
T ss_pred CeEEEecCcccchHHHHHHHHHHHhCCCCccccCCHHHHHHHHH----------HhcCCCEEEEeCCCCCccCHHHHHHH
Confidence 46777776643 235566666667776766777777666653 22357999999732 1122 23333
Q ss_pred HHHhccCCCCCCcEEEEeCCCcHH---HHHHHHHc----CCceEE-eCCCCHHHHHHHHHH
Q 026776 104 KKIKDSSALREIPVVIMSSENILA---RIDRCLED----GAEDFI-VKPVKLSDVKRIKDY 156 (233)
Q Consensus 104 ~~Lr~~~~~~~~piIvlt~~~~~~---~~~~al~~----Ga~dyL-~KP~~~~eL~~~~~~ 156 (233)
..+.... .+.-.++++.+....+ .+.+.+.. +.+++| +|=.....+-.++..
T Consensus 286 ~~l~~~~-~p~e~~LVLsAt~~~~~l~~i~~~f~~~~~~~i~glIlTKLDEt~~~G~iL~i 345 (767)
T PRK14723 286 AMLCGVG-RPVRRLLLLNAASHGDTLNEVVHAYRHGAGEDVDGCIITKLDEATHLGPALDT 345 (767)
T ss_pred HHHhccC-CCCeEEEEECCCCcHHHHHHHHHHHhhcccCCCCEEEEeccCCCCCccHHHHH
Confidence 3433221 1234556665544333 34455543 567764 444333334344433
No 248
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=62.33 E-value=42 Score=29.36 Aligned_cols=58 Identities=21% Similarity=0.229 Sum_probs=40.5
Q ss_pred CCcccEEEEcCCCCCC-CHHHHHHHHhccCCCCCCcEEEEeCCCcHHHHHHHHHcCCceEEe
Q 026776 82 GLKVDLIITDYCMPGM-TGYELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIV 142 (233)
Q Consensus 82 ~~~~DlvllD~~mp~~-~g~~ll~~Lr~~~~~~~~piIvlt~~~~~~~~~~al~~Ga~dyL~ 142 (233)
...+|+|.+|..-... .-.+++++|++..+ .++|++ ..-.+.+.+..++++|+|....
T Consensus 104 eagv~~I~vd~~~G~~~~~~~~i~~ik~~~p--~v~Vi~-G~v~t~~~A~~l~~aGaD~I~v 162 (325)
T cd00381 104 EAGVDVIVIDSAHGHSVYVIEMIKFIKKKYP--NVDVIA-GNVVTAEAARDLIDAGADGVKV 162 (325)
T ss_pred hcCCCEEEEECCCCCcHHHHHHHHHHHHHCC--CceEEE-CCCCCHHHHHHHHhcCCCEEEE
Confidence 3468999998754332 34788889987643 566664 3335667788899999998764
No 249
>PF06073 DUF934: Bacterial protein of unknown function (DUF934); InterPro: IPR008318 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=62.27 E-value=59 Score=23.78 Aligned_cols=71 Identities=10% Similarity=0.115 Sum_probs=47.6
Q ss_pred ccEEEEcCC-CCCCCHHHHHHHHhccCCCCCCcEEEEeCCCcHHHHHHHHHcCCceEEeCC-CCHHHHHHHHHHH
Q 026776 85 VDLIITDYC-MPGMTGYELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKP-VKLSDVKRIKDYL 157 (233)
Q Consensus 85 ~DlvllD~~-mp~~~g~~ll~~Lr~~~~~~~~piIvlt~~~~~~~~~~al~~Ga~dyL~KP-~~~~eL~~~~~~l 157 (233)
.++|.++.- .-+.-|+...+.||+... ...-|--+++--.+...-..+.|++.|..+. .+.+...+.+..+
T Consensus 20 l~lI~i~FP~F~DGRgfS~ArlLR~r~g--y~GelRA~Gdvl~DQl~~l~R~GFdsf~l~~~~~~~~~~~~l~~f 92 (110)
T PF06073_consen 20 LPLIAIDFPKFTDGRGFSQARLLRERYG--YTGELRAVGDVLRDQLFYLRRCGFDSFELREDQDPEDALAALSDF 92 (110)
T ss_pred CCEEEEECCCcCCchHhHHHHHHHHHcC--CCCcEEEeccchHHHHHHHHHcCCCEEEeCCCCCHHHHHHHHhhC
Confidence 456666542 225678999999996554 2333555677777788888899999998886 5555554444433
No 250
>cd03823 GT1_ExpE7_like This family is most closely related to the GT1 family of glycosyltransferases. ExpE7 in Sinorhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucans (exopolysaccharide II).
Probab=61.87 E-value=94 Score=25.94 Aligned_cols=66 Identities=14% Similarity=0.262 Sum_probs=42.9
Q ss_pred ccEEEEcCCCCCCCHHHHHHHHhccCCCCCCcEEEEeCCCcHHHHHHHHHcCCceEEeCCCCHHHHHHHHHHHhh
Q 026776 85 VDLIITDYCMPGMTGYELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVKLSDVKRIKDYLTR 159 (233)
Q Consensus 85 ~DlvllD~~mp~~~g~~ll~~Lr~~~~~~~~piIvlt~~~~~~~~~~al~~Ga~dyL~KP~~~~eL~~~~~~l~~ 159 (233)
.|++++=....+.-|..+++.+.. .+|+|+- .... ..+.+..|..+++.++.+.+++...+..+..
T Consensus 263 ad~~i~ps~~~e~~~~~~~Ea~a~-----G~Pvi~~-~~~~---~~e~i~~~~~g~~~~~~d~~~l~~~i~~l~~ 328 (359)
T cd03823 263 IDVLVVPSIWPENFPLVIREALAA-----GVPVIAS-DIGG---MAELVRDGVNGLLFPPGDAEDLAAALERLID 328 (359)
T ss_pred CCEEEEcCcccCCCChHHHHHHHC-----CCCEEEC-CCCC---HHHHhcCCCcEEEECCCCHHHHHHHHHHHHh
Confidence 477775433234456677777753 6677753 3222 3345667778999999999999877766654
No 251
>PRK08857 para-aminobenzoate synthase component II; Provisional
Probab=61.81 E-value=37 Score=27.10 Aligned_cols=29 Identities=14% Similarity=0.072 Sum_probs=25.2
Q ss_pred EEEEeCCHHHHHHHHHHHhhcCCEEEEEC
Q 026776 32 VLAVDDSFVDRKVIERLLTISSCKVTAVD 60 (233)
Q Consensus 32 ILIVddd~~~~~~l~~~L~~~g~~v~~a~ 60 (233)
||+||....+-..+.++|++.|+.+....
T Consensus 2 il~id~~dsft~~~~~~l~~~g~~~~~~~ 30 (193)
T PRK08857 2 LLMIDNYDSFTYNLYQYFCELGAQVKVVR 30 (193)
T ss_pred EEEEECCCCcHHHHHHHHHHCCCcEEEEE
Confidence 89999988888889999999998777655
No 252
>cd00564 TMP_TenI Thiamine monophosphate synthase (TMP synthase)/TenI. TMP synthase catalyzes an important step in the thiamine biosynthesis pathway, the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl) thiazole phosphate to yield thiamine phosphate. TenI is a enzymatically inactive regulatory protein involved in the regulation of several extracellular enzymes. This superfamily also contains other enzymatically inactive proteins with unknown functions.
Probab=61.39 E-value=75 Score=24.64 Aligned_cols=56 Identities=29% Similarity=0.361 Sum_probs=40.5
Q ss_pred cccEEEEcCCCCC--------CCHHHHHHHHhccCCCCCCcEEEEeCCCcHHHHHHHHHcCCceEEeC
Q 026776 84 KVDLIITDYCMPG--------MTGYELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVK 143 (233)
Q Consensus 84 ~~DlvllD~~mp~--------~~g~~ll~~Lr~~~~~~~~piIvlt~~~~~~~~~~al~~Ga~dyL~K 143 (233)
.+|.|+++...|. ..|++.++++++. ..+|+++..+- ..+.+.++++.|++++..=
T Consensus 115 g~d~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~pv~a~GGi-~~~~i~~~~~~Ga~~i~~g 178 (196)
T cd00564 115 GADYVGFGPVFPTPTKPGAGPPLGLELLREIAEL---VEIPVVAIGGI-TPENAAEVLAAGADGVAVI 178 (196)
T ss_pred CCCEEEECCccCCCCCCCCCCCCCHHHHHHHHHh---CCCCEEEECCC-CHHHHHHHHHcCCCEEEEe
Confidence 4899988754432 3467888888764 26888887655 4577888999999988553
No 253
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=61.21 E-value=1.4e+02 Score=27.86 Aligned_cols=44 Identities=18% Similarity=0.201 Sum_probs=33.7
Q ss_pred CCHHHHHHHHhccCCCCCCcEEEEeCCCcHHHHHHHHHcCCceEEeC
Q 026776 97 MTGYELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVK 143 (233)
Q Consensus 97 ~~g~~ll~~Lr~~~~~~~~piIvlt~~~~~~~~~~al~~Ga~dyL~K 143 (233)
...+..+.++.+. ..+|||+-.+-.....+.+|+.+||+.++.=
T Consensus 337 ~~~i~~~~~~~~~---~~vpVIadGGI~~~~di~kAla~GA~~V~vG 380 (505)
T PLN02274 337 ATAVYKVASIAAQ---HGVPVIADGGISNSGHIVKALTLGASTVMMG 380 (505)
T ss_pred ccHHHHHHHHHHh---cCCeEEEeCCCCCHHHHHHHHHcCCCEEEEc
Confidence 3455556666543 2689998888888999999999999998764
No 254
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=60.93 E-value=78 Score=29.96 Aligned_cols=117 Identities=12% Similarity=0.101 Sum_probs=55.8
Q ss_pred cEEEEEeCCHHH---HHHHHHHHhhcCCEEEEECCHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCCC-CC--HHHHH
Q 026776 30 VHVLAVDDSFVD---RKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPG-MT--GYELL 103 (233)
Q Consensus 30 ~~ILIVddd~~~---~~~l~~~L~~~g~~v~~a~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp~-~~--g~~ll 103 (233)
.+|.+++-|... .+.+..+-...|+.+..+.+..+..+.+. ....+|+||+|.---. .+ ..+.+
T Consensus 381 kkVaLIdtDtyRigA~EQLk~ya~iLgv~v~~a~d~~~L~~aL~----------~l~~~DLVLIDTaG~s~~D~~l~eeL 450 (559)
T PRK12727 381 RDVALVTTDTQRVGGREQLHSYGRQLGIAVHEADSAESLLDLLE----------RLRDYKLVLIDTAGMGQRDRALAAQL 450 (559)
T ss_pred CceEEEecccccccHHHHHHHhhcccCceeEecCcHHHHHHHHH----------HhccCCEEEecCCCcchhhHHHHHHH
Confidence 457777655421 23344444445666666666655555542 1235899999974211 11 12223
Q ss_pred HHHhccCCCCCCcEEEEeCCCcHHH---HHHHH-HcCCceEE-eCCCCHHHHHHHHHHHh
Q 026776 104 KKIKDSSALREIPVVIMSSENILAR---IDRCL-EDGAEDFI-VKPVKLSDVKRIKDYLT 158 (233)
Q Consensus 104 ~~Lr~~~~~~~~piIvlt~~~~~~~---~~~al-~~Ga~dyL-~KP~~~~eL~~~~~~l~ 158 (233)
.+|+.... ...++++........ ..+.+ ..+.++++ .|=-....+..++..+.
T Consensus 451 ~~L~aa~~--~a~lLVLpAtss~~Dl~eii~~f~~~~~~gvILTKlDEt~~lG~aLsv~~ 508 (559)
T PRK12727 451 NWLRAARQ--VTSLLVLPANAHFSDLDEVVRRFAHAKPQGVVLTKLDETGRFGSALSVVV 508 (559)
T ss_pred HHHHHhhc--CCcEEEEECCCChhHHHHHHHHHHhhCCeEEEEecCcCccchhHHHHHHH
Confidence 34443322 344566655543322 22333 33555554 44322333445554444
No 255
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=60.59 E-value=25 Score=29.43 Aligned_cols=67 Identities=18% Similarity=0.197 Sum_probs=43.3
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhc-------CCEEEEECCHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCCCCCH---
Q 026776 30 VHVLAVDDSFVDRKVIERLLTIS-------SCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTG--- 99 (233)
Q Consensus 30 ~~ILIVddd~~~~~~l~~~L~~~-------g~~v~~a~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp~~~g--- 99 (233)
.+|-+||=|+.+.+..+++|... ..++ ...|+...++.. ....||+|++|..-|...+
T Consensus 101 ~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i-~~~Dg~~~l~~~-----------~~~~yDvIi~D~~dp~~~~~~l 168 (246)
T PF01564_consen 101 ESITVVEIDPEVVELARKYFPEFSEGLDDPRVRI-IIGDGRKFLKET-----------QEEKYDVIIVDLTDPDGPAPNL 168 (246)
T ss_dssp SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEE-EESTHHHHHHTS-----------SST-EEEEEEESSSTTSCGGGG
T ss_pred ceEEEEecChHHHHHHHHhchhhccccCCCceEE-EEhhhHHHHHhc-----------cCCcccEEEEeCCCCCCCcccc
Confidence 56889999999999988887542 1233 567777766654 2227999999998765433
Q ss_pred --HHHHHHHhc
Q 026776 100 --YELLKKIKD 108 (233)
Q Consensus 100 --~~ll~~Lr~ 108 (233)
.++.+.+++
T Consensus 169 ~t~ef~~~~~~ 179 (246)
T PF01564_consen 169 FTREFYQLCKR 179 (246)
T ss_dssp SSHHHHHHHHH
T ss_pred cCHHHHHHHHh
Confidence 345555543
No 256
>cd06388 PBP1_iGluR_AMPA_GluR4 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR4 subunit of the AMPA receptor. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR4 subunit of the AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid) receptor. The AMPA receptor is a member of the glutamate-receptor ion channels (iGluRs) which are the major mediators of excitatory synaptic transmission in the central nervous system. AMPA receptors are composed of four types of subunits (GluR1, GluR2, GluR3, and GluR4) which combine to form a tetramer and play an important role in mediating the rapid excitatory synaptic current. Furthermore, this N-terminal domain of the iGluRs has homology with LIVBP, a bacterial periplasmic binding protein, as well as with the structurally related glutamate-binding domain of the G-protein-coupled metabotropic receptors (mGluRs).
Probab=60.49 E-value=1.2e+02 Score=26.78 Aligned_cols=29 Identities=14% Similarity=0.124 Sum_probs=21.4
Q ss_pred CCCcccEEEEcCCCCCCCHHHHHHHHhccCC
Q 026776 81 DGLKVDLIITDYCMPGMTGYELLKKIKDSSA 111 (233)
Q Consensus 81 ~~~~~DlvllD~~mp~~~g~~ll~~Lr~~~~ 111 (233)
....+|.||+|+.- .....+++++++.+.
T Consensus 175 k~~~~~~iil~~~~--~~~~~il~qa~~~gm 203 (371)
T cd06388 175 DRRQEKKFVIDCEI--ERLQNILEQIVSVGK 203 (371)
T ss_pred cccccEEEEEECCH--HHHHHHHHHHHhcCc
Confidence 45678999998743 446788888888765
No 257
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=60.31 E-value=33 Score=31.81 Aligned_cols=57 Identities=14% Similarity=0.228 Sum_probs=41.2
Q ss_pred CCcccEEEEcCCCC-CCCHHHHHHHHhccCCCCCCcEEEEeCCCcHHHHHHHHHcCCceEE
Q 026776 82 GLKVDLIITDYCMP-GMTGYELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFI 141 (233)
Q Consensus 82 ~~~~DlvllD~~mp-~~~g~~ll~~Lr~~~~~~~~piIvlt~~~~~~~~~~al~~Ga~dyL 141 (233)
....|++++|..-. ...-++.+++|+...+ ++++|+ ..-.+.+.+..++++|++.+-
T Consensus 238 ~agvdvivvD~a~g~~~~vl~~i~~i~~~~p--~~~vi~-g~v~t~e~a~~l~~aGad~i~ 295 (486)
T PRK05567 238 EAGVDVLVVDTAHGHSEGVLDRVREIKAKYP--DVQIIA-GNVATAEAARALIEAGADAVK 295 (486)
T ss_pred HhCCCEEEEECCCCcchhHHHHHHHHHhhCC--CCCEEE-eccCCHHHHHHHHHcCCCEEE
Confidence 34588999997533 2346778888887653 677775 444567888899999998874
No 258
>TIGR00696 wecB_tagA_cpsF bacterial polymer biosynthesis proteins, WecB/TagA/CpsF family. The WecG member of this superfamily, believed to be UDP-N-acetyl-D-mannosaminuronic acid transferase, plays a role in enterobacterial common antigen (eca) synthesis in Escherichia coli. Another family member, the Bacillus subtilis TagA protein, is involved in the biosynthesis of the cell wall polymer poly(glycerol phosphate). The third family member, CpsF, CMP-N-acetylneuraminic acid synthetase has a role in the capsular polysaccharide biosynthesis pathway.
Probab=60.24 E-value=67 Score=25.45 Aligned_cols=70 Identities=9% Similarity=0.057 Sum_probs=47.3
Q ss_pred CCCcEEEEEeCCHHHHHHHHHHHhhc--CCEEEEEC------CHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCCCCC
Q 026776 27 TEEVHVLAVDDSFVDRKVIERLLTIS--SCKVTAVD------SGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMT 98 (233)
Q Consensus 27 ~~~~~ILIVddd~~~~~~l~~~L~~~--g~~v~~a~------~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp~~~ 98 (233)
.++.+|.++...+...+.+.+.|+.. |.++.... ..++.++.+ ....+|+|++-+.+|...
T Consensus 46 ~~~~~vfllG~~~~v~~~~~~~l~~~yP~l~i~g~~g~f~~~~~~~i~~~I-----------~~s~~dil~VglG~PkQE 114 (177)
T TIGR00696 46 KEKLPIFLYGGKPDVLQQLKVKLIKEYPKLKIVGAFGPLEPEERKAALAKI-----------ARSGAGIVFVGLGCPKQE 114 (177)
T ss_pred HcCCeEEEECCCHHHHHHHHHHHHHHCCCCEEEEECCCCChHHHHHHHHHH-----------HHcCCCEEEEEcCCcHhH
Confidence 45689999999999988888888764 45544331 112233444 456799999999999877
Q ss_pred HHHHHHHHhcc
Q 026776 99 GYELLKKIKDS 109 (233)
Q Consensus 99 g~~ll~~Lr~~ 109 (233)
- ++.+.+..
T Consensus 115 ~--~~~~~~~~ 123 (177)
T TIGR00696 115 I--WMRNHRHL 123 (177)
T ss_pred H--HHHHhHHh
Confidence 4 34555443
No 259
>TIGR00734 hisAF_rel hisA/hisF family protein. This alignment models a family of proteins found so far in three archaeal species: Methanobacterium thermoautotrophicum, Methanococcus jannaschii, and Archaeoglobus fulgidus. This protein is homologous to phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (HisA) and, with lower similarity, to the cyclase HisF, both of which are enzymes of histidine biosynthesis. Each species with this protein also encodes HisA. The function of this protein is unknown.
Probab=60.00 E-value=64 Score=26.48 Aligned_cols=54 Identities=28% Similarity=0.331 Sum_probs=42.0
Q ss_pred cEEEEcCCCCCC-C--HHHHHHHHhccCCCCCCcEEEEeCCCcHHHHHHHHHcCCceEEe
Q 026776 86 DLIITDYCMPGM-T--GYELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIV 142 (233)
Q Consensus 86 DlvllD~~mp~~-~--g~~ll~~Lr~~~~~~~~piIvlt~~~~~~~~~~al~~Ga~dyL~ 142 (233)
.+|++|+.--++ . .+++++.+.+.. .+|+|+-.+-.+.+++.++.+.|+++.+.
T Consensus 156 ~ii~tdI~~dGt~~G~d~eli~~i~~~~---~~pvia~GGi~s~ed~~~l~~~Ga~~viv 212 (221)
T TIGR00734 156 GLIVLDIHSVGTMKGPNLELLTKTLELS---EHPVMLGGGISGVEDLELLKEMGVSAVLV 212 (221)
T ss_pred EEEEEECCccccCCCCCHHHHHHHHhhC---CCCEEEeCCCCCHHHHHHHHHCCCCEEEE
Confidence 588899876433 2 378888888752 68888877778888888888999999875
No 260
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=59.69 E-value=1.3e+02 Score=27.02 Aligned_cols=118 Identities=13% Similarity=0.076 Sum_probs=61.5
Q ss_pred CcEEEEEeCCHH---HHHHHHHHHhhcCCEEEEECCHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCC-CCCHH---H
Q 026776 29 EVHVLAVDDSFV---DRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMP-GMTGY---E 101 (233)
Q Consensus 29 ~~~ILIVddd~~---~~~~l~~~L~~~g~~v~~a~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp-~~~g~---~ 101 (233)
+.+|.+|.-|.. ..+.++.+....|..+..+.+..+....+. ....+|+||+|.--- ..+.. +
T Consensus 206 g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~----------~~~~~DlVLIDTaGr~~~~~~~l~e 275 (388)
T PRK12723 206 SLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEIT----------QSKDFDLVLVDTIGKSPKDFMKLAE 275 (388)
T ss_pred CCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHH----------HhCCCCEEEEcCCCCCccCHHHHHH
Confidence 457877776643 233355555556777777777666555442 224689999997422 12332 3
Q ss_pred HHHHHhccCCCCCCcEEEEeCCCcHHHHHHHHH----cCCceEE-eCCCCHHHHHHHHHHH
Q 026776 102 LLKKIKDSSALREIPVVIMSSENILARIDRCLE----DGAEDFI-VKPVKLSDVKRIKDYL 157 (233)
Q Consensus 102 ll~~Lr~~~~~~~~piIvlt~~~~~~~~~~al~----~Ga~dyL-~KP~~~~eL~~~~~~l 157 (233)
+.+.+..... ..-.++++++........+.+. .|.++++ +|=......-.++..+
T Consensus 276 l~~~l~~~~~-~~e~~LVlsat~~~~~~~~~~~~~~~~~~~~~I~TKlDet~~~G~~l~~~ 335 (388)
T PRK12723 276 MKELLNACGR-DAEFHLAVSSTTKTSDVKEIFHQFSPFSYKTVIFTKLDETTCVGNLISLI 335 (388)
T ss_pred HHHHHHhcCC-CCeEEEEEcCCCCHHHHHHHHHHhcCCCCCEEEEEeccCCCcchHHHHHH
Confidence 3333333221 1235677776655444444432 4567764 4443333344444433
No 261
>TIGR01815 TrpE-clade3 anthranilate synthase, alpha proteobacterial clade. This model represents a small clade of anthranilate synthases from alpha proteobacteria and Nostoc (a cyanobacterium). This enzyme is the first step in the pathway for the biosynthesis of tryprophan from chorismate.
Probab=59.57 E-value=55 Score=32.03 Aligned_cols=78 Identities=18% Similarity=0.189 Sum_probs=48.7
Q ss_pred CCCcEEEEEeCCHHHHHHHHHHHhhcCCEEEEECCH--HHHHHHhhhhhhhhccCCCCCcccEEEEcCC--CC-CCCHHH
Q 026776 27 TEEVHVLAVDDSFVDRKVIERLLTISSCKVTAVDSG--RRALQFLGLDEEQSINGFDGLKVDLIITDYC--MP-GMTGYE 101 (233)
Q Consensus 27 ~~~~~ILIVddd~~~~~~l~~~L~~~g~~v~~a~~~--~~al~~l~~~~~~~~~~~~~~~~DlvllD~~--mp-~~~g~~ 101 (233)
....+|+|||-...+...+..+|+..|+++...... .+.++ ...+|.||+--. -| +.+-.+
T Consensus 514 ~~~~~IlVID~gds~~~~l~~~L~~~G~~v~vv~~~~~~~~~~--------------~~~~DgLILsgGPGsp~d~~~~~ 579 (717)
T TIGR01815 514 GEGRRILLVDHEDSFVHTLANYLRQTGASVTTLRHSHAEAAFD--------------ERRPDLVVLSPGPGRPADFDVAG 579 (717)
T ss_pred CCCCEEEEEECCChhHHHHHHHHHHCCCeEEEEECCCChhhhh--------------hcCCCEEEEcCCCCCchhcccHH
Confidence 456899999988777788999999999888766533 22222 235888777211 11 112244
Q ss_pred HHHHHhccCCCCCCcEEEEeC
Q 026776 102 LLKKIKDSSALREIPVVIMSS 122 (233)
Q Consensus 102 ll~~Lr~~~~~~~~piIvlt~ 122 (233)
+++++.+ ..+|++-+.-
T Consensus 580 ~I~~~~~----~~iPvLGICL 596 (717)
T TIGR01815 580 TIDAALA----RGLPVFGVCL 596 (717)
T ss_pred HHHHHHH----CCCCEEEECH
Confidence 4554432 2789988853
No 262
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=59.44 E-value=87 Score=24.76 Aligned_cols=85 Identities=21% Similarity=0.202 Sum_probs=53.3
Q ss_pred HHHHHHHhhcCCEEE----EECCHHHHHHHhhhhhhhhccCCCCCcccEEEEcCC-----CCCCCHHHHHHHHhccCCCC
Q 026776 43 KVIERLLTISSCKVT----AVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYC-----MPGMTGYELLKKIKDSSALR 113 (233)
Q Consensus 43 ~~l~~~L~~~g~~v~----~a~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~-----mp~~~g~~ll~~Lr~~~~~~ 113 (233)
..+.+..++.|..+. ...+..+.+..+ ....|.+.+... .....+.+.++.+++. .
T Consensus 93 ~~~i~~~~~~g~~~~v~~~~~~t~~e~~~~~------------~~~~d~v~~~~~~~~~~~~~~~~~~~i~~~~~~---~ 157 (202)
T cd04726 93 KKAVKAAKKYGKEVQVDLIGVEDPEKRAKLL------------KLGVDIVILHRGIDAQAAGGWWPEDDLKKVKKL---L 157 (202)
T ss_pred HHHHHHHHHcCCeEEEEEeCCCCHHHHHHHH------------HCCCCEEEEcCcccccccCCCCCHHHHHHHHhh---c
Confidence 344445566665443 345777776633 335788777431 1124567777887754 2
Q ss_pred CCcEEEEeCCCcHHHHHHHHHcCCceEEeC
Q 026776 114 EIPVVIMSSENILARIDRCLEDGAEDFIVK 143 (233)
Q Consensus 114 ~~piIvlt~~~~~~~~~~al~~Ga~dyL~K 143 (233)
++|+++.-+- ..+.+.++++.|++.++.-
T Consensus 158 ~~~i~~~GGI-~~~~i~~~~~~Gad~vvvG 186 (202)
T cd04726 158 GVKVAVAGGI-TPDTLPEFKKAGADIVIVG 186 (202)
T ss_pred CCCEEEECCc-CHHHHHHHHhcCCCEEEEe
Confidence 6777765544 4778889999999988654
No 263
>cd06341 PBP1_ABC_ligand_binding_like_7 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=59.43 E-value=1.1e+02 Score=26.19 Aligned_cols=71 Identities=18% Similarity=0.134 Sum_probs=43.0
Q ss_pred HHHHHHHHhhcCCEEEE-------ECCHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCCCCCHHHHHHHHhccCCCCC
Q 026776 42 RKVIERLLTISSCKVTA-------VDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKKIKDSSALRE 114 (233)
Q Consensus 42 ~~~l~~~L~~~g~~v~~-------a~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp~~~g~~ll~~Lr~~~~~~~ 114 (233)
...+++.+++.|.++.. ..+....+..+ ....||+|++-. ....+..+++.+++... .
T Consensus 150 ~~~~~~~~~~~G~~v~~~~~~~~~~~d~~~~~~~i-----------~~~~pdaV~~~~--~~~~a~~~~~~~~~~G~--~ 214 (341)
T cd06341 150 AALLARSLAAAGVSVAGIVVITATAPDPTPQAQQA-----------AAAGADAIITVL--DAAVCASVLKAVRAAGL--T 214 (341)
T ss_pred HHHHHHHHHHcCCccccccccCCCCCCHHHHHHHH-----------HhcCCCEEEEec--ChHHHHHHHHHHHHcCC--C
Confidence 44456667777765432 13444555555 334699998743 33377889999998765 6
Q ss_pred CcEEEEeCCCcHH
Q 026776 115 IPVVIMSSENILA 127 (233)
Q Consensus 115 ~piIvlt~~~~~~ 127 (233)
.++++.....+..
T Consensus 215 ~~~~~~~~~~~~~ 227 (341)
T cd06341 215 PKVVLSGTCYDPA 227 (341)
T ss_pred CCEEEecCCCCHH
Confidence 6766554433433
No 264
>PRK13587 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=59.40 E-value=40 Score=27.95 Aligned_cols=54 Identities=22% Similarity=0.326 Sum_probs=42.2
Q ss_pred cEEEEcCCCCCC-C--HHHHHHHHhccCCCCCCcEEEEeCCCcHHHHHHHHHcCCceEEe
Q 026776 86 DLIITDYCMPGM-T--GYELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIV 142 (233)
Q Consensus 86 DlvllD~~mp~~-~--g~~ll~~Lr~~~~~~~~piIvlt~~~~~~~~~~al~~Ga~dyL~ 142 (233)
.+|++|+..-++ . .+++++.+.+.. .+|+++-.+-.+.+++.++++.|++.++.
T Consensus 164 ~ii~tdi~~dGt~~G~~~~li~~l~~~~---~ipvi~~GGi~s~edi~~l~~~G~~~viv 220 (234)
T PRK13587 164 GIIYTDIAKDGKMSGPNFELTGQLVKAT---TIPVIASGGIRHQQDIQRLASLNVHAAII 220 (234)
T ss_pred EEEEecccCcCCCCccCHHHHHHHHHhC---CCCEEEeCCCCCHHHHHHHHHcCCCEEEE
Confidence 588888875543 2 367778887642 78999888888889999999999999886
No 265
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=59.40 E-value=93 Score=25.10 Aligned_cols=80 Identities=14% Similarity=0.140 Sum_probs=50.5
Q ss_pred hhcCCEE-EEECCHHHHHHHhhhhhhhhccCCCCCcccEEEEcC-CC-CCCCHHHHHHHHhccCCCCCCcEEEEeCCCcH
Q 026776 50 TISSCKV-TAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDY-CM-PGMTGYELLKKIKDSSALREIPVVIMSSENIL 126 (233)
Q Consensus 50 ~~~g~~v-~~a~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~-~m-p~~~g~~ll~~Lr~~~~~~~~piIvlt~~~~~ 126 (233)
...|..+ ..+.+.+++.+.. ...+|.+.+.- .. ....+++.++++++..+ ...|++...+-...
T Consensus 118 ~~~g~~~~v~v~~~~e~~~~~------------~~g~~~i~~t~~~~~~~~~~~~~~~~l~~~~~-~~~pvia~gGI~s~ 184 (217)
T cd00331 118 RELGMEVLVEVHDEEELERAL------------ALGAKIIGINNRDLKTFEVDLNTTERLAPLIP-KDVILVSESGISTP 184 (217)
T ss_pred HHcCCeEEEEECCHHHHHHHH------------HcCCCEEEEeCCCccccCcCHHHHHHHHHhCC-CCCEEEEEcCCCCH
Confidence 4456654 3355666655544 23467665541 10 01123577788876421 26788888888888
Q ss_pred HHHHHHHHcCCceEEe
Q 026776 127 ARIDRCLEDGAEDFIV 142 (233)
Q Consensus 127 ~~~~~al~~Ga~dyL~ 142 (233)
+.+.++++.|+++++.
T Consensus 185 edi~~~~~~Ga~gviv 200 (217)
T cd00331 185 EDVKRLAEAGADAVLI 200 (217)
T ss_pred HHHHHHHHcCCCEEEE
Confidence 8999999999999975
No 266
>PRK04148 hypothetical protein; Provisional
Probab=59.39 E-value=21 Score=27.10 Aligned_cols=58 Identities=14% Similarity=0.199 Sum_probs=42.0
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHhhcCCEEEEECCHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCCCCC
Q 026776 28 EEVHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMT 98 (233)
Q Consensus 28 ~~~~ILIVddd~~~~~~l~~~L~~~g~~v~~a~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp~~~ 98 (233)
++.+|+.|.=- +...+...|.+.|++|...+...++.+.+. ....+++.-|+.-|..+
T Consensus 16 ~~~kileIG~G--fG~~vA~~L~~~G~~ViaIDi~~~aV~~a~-----------~~~~~~v~dDlf~p~~~ 73 (134)
T PRK04148 16 KNKKIVELGIG--FYFKVAKKLKESGFDVIVIDINEKAVEKAK-----------KLGLNAFVDDLFNPNLE 73 (134)
T ss_pred cCCEEEEEEec--CCHHHHHHHHHCCCEEEEEECCHHHHHHHH-----------HhCCeEEECcCCCCCHH
Confidence 34678888755 333456677788999999998888887763 33468888898877655
No 267
>cd04824 eu_ALAD_PBGS_cysteine_rich Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the biosynthesis of tetrapyrroles, such as heme, vitamin B12 and chlorophyll. This reaction involves the formation of a Schiff base link between the substrate and the enzyme. PBGSs are metalloenzymes, some of which have a second, allosteric metal binding site, beside the metal ion binding site in their active site. Although PBGS is a family of homologous enzymes, its metal ion utilization at catalytic site varies between zinc and magnesium and/or potassium. PBGS can be classified into two groups based on differences in their active site metal binding site. The eukaryotic PBGSs represented by this model, which contain a cysteine-rich zinc binding motif (DXCXCX(Y/F)X3G(H/Q)CG), require zinc for their activity, they
Probab=59.10 E-value=40 Score=29.38 Aligned_cols=66 Identities=23% Similarity=0.374 Sum_probs=47.9
Q ss_pred CHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCCCCCHHHHHHHHhccCCCCCCcEEEEeCCCcHHHHHHHHHcCCce
Q 026776 61 SGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAED 139 (233)
Q Consensus 61 ~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp~~~g~~ll~~Lr~~~~~~~~piIvlt~~~~~~~~~~al~~Ga~d 139 (233)
|..+|+..+..+- .+..|+|++- |.+-=+++++.+|+..+ ++|+.++--++....+..|.+.|..|
T Consensus 223 n~~eAlre~~~D~--------~EGAD~lMVK---Pal~YLDIi~~~k~~~~--~~PvaaYqVSGEYaMikaAa~~G~iD 288 (320)
T cd04824 223 ARGLALRAVERDV--------SEGADMIMVK---PGTPYLDIVREAKDKHP--DLPLAVYHVSGEYAMLHAAAEAGAFD 288 (320)
T ss_pred CHHHHHHHHHhhH--------HhCCCEEEEc---CCchHHHHHHHHHHhcc--CCCEEEEEccHHHHHHHHHHHcCCCc
Confidence 5566666654432 2357899886 77778899999998765 89999987777666676777777554
No 268
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=59.06 E-value=61 Score=26.20 Aligned_cols=66 Identities=12% Similarity=0.099 Sum_probs=40.8
Q ss_pred EEcCCCCCCCHHHHHHHHhccCCCCCCcEEEEeCCCcHHHHHHHHHcCCceEEe--CCCCHHHHHHHHHHH
Q 026776 89 ITDYCMPGMTGYELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIV--KPVKLSDVKRIKDYL 157 (233)
Q Consensus 89 llD~~mp~~~g~~ll~~Lr~~~~~~~~piIvlt~~~~~~~~~~al~~Ga~dyL~--KP~~~~eL~~~~~~l 157 (233)
++|...--...++.++.+++.. .+||++...-.+...+..++++|++.++. .-+..+.+..++...
T Consensus 50 v~~~~~~~~g~~~~~~~i~~~v---~iPi~~~~~i~~~~~v~~~~~~Gad~v~l~~~~~~~~~~~~~~~~~ 117 (217)
T cd00331 50 VLTEPKYFQGSLEDLRAVREAV---SLPVLRKDFIIDPYQIYEARAAGADAVLLIVAALDDEQLKELYELA 117 (217)
T ss_pred EEeCccccCCCHHHHHHHHHhc---CCCEEECCeecCHHHHHHHHHcCCCEEEEeeccCCHHHHHHHHHHH
Confidence 3344444445667888887642 78888754334455788899999999973 223334555554443
No 269
>PLN02366 spermidine synthase
Probab=58.91 E-value=1.2e+02 Score=26.30 Aligned_cols=68 Identities=13% Similarity=0.074 Sum_probs=36.5
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhc-----CCEEE-EECCHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCCCCC-----
Q 026776 30 VHVLAVDDSFVDRKVIERLLTIS-----SCKVT-AVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMT----- 98 (233)
Q Consensus 30 ~~ILIVddd~~~~~~l~~~L~~~-----g~~v~-~a~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp~~~----- 98 (233)
.+|-+||=|+.+.+..++.+... +-++. ...++.+.++.. ....||+||+|..-|..-
T Consensus 116 ~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~-----------~~~~yDvIi~D~~dp~~~~~~L~ 184 (308)
T PLN02366 116 EQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNA-----------PEGTYDAIIVDSSDPVGPAQELF 184 (308)
T ss_pred CeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhc-----------cCCCCCEEEEcCCCCCCchhhhh
Confidence 45677777776666666665432 11222 234444444322 134699999998665322
Q ss_pred HHHHHHHHhc
Q 026776 99 GYELLKKIKD 108 (233)
Q Consensus 99 g~~ll~~Lr~ 108 (233)
..++.+.++.
T Consensus 185 t~ef~~~~~~ 194 (308)
T PLN02366 185 EKPFFESVAR 194 (308)
T ss_pred HHHHHHHHHH
Confidence 2345555554
No 270
>PF04131 NanE: Putative N-acetylmannosamine-6-phosphate epimerase; InterPro: IPR007260 This family represents a putative ManNAc-6-P-to-GlcNAc-6P epimerase in the N-acetylmannosamine (ManNAc) utilization pathway found mainly in pathogenic bacteria for the reaction: N-acyl-D-glucosamine 6-phosphate = N-acyl-D-mannosamine 6-phosphate It is probably encoded by the yhcJ gene [].; GO: 0047465 N-acylglucosamine-6-phosphate 2-epimerase activity, 0006051 N-acetylmannosamine metabolic process; PDB: 1Y0E_B 3IGS_A 1YXY_A 3Q58_B.
Probab=58.86 E-value=34 Score=27.63 Aligned_cols=69 Identities=19% Similarity=0.127 Sum_probs=46.9
Q ss_pred CCEEEEECCHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCC--CCCHHHHHHHHhccCCCCCCcEEEEeCCCcHHHHH
Q 026776 53 SCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMP--GMTGYELLKKIKDSSALREIPVVIMSSENILARID 130 (233)
Q Consensus 53 g~~v~~a~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp--~~~g~~ll~~Lr~~~~~~~~piIvlt~~~~~~~~~ 130 (233)
++.|..-.+.+++.+.+. ...|+|=+|...- ...-.++++++|+.. .+++..-.+.++..
T Consensus 45 ~~~V~ITPT~~ev~~l~~------------aGadIIAlDaT~R~Rp~~l~~li~~i~~~~------~l~MADist~ee~~ 106 (192)
T PF04131_consen 45 DSDVYITPTLKEVDALAE------------AGADIIALDATDRPRPETLEELIREIKEKY------QLVMADISTLEEAI 106 (192)
T ss_dssp TSS--BS-SHHHHHHHHH------------CT-SEEEEE-SSSS-SS-HHHHHHHHHHCT------SEEEEE-SSHHHHH
T ss_pred CCCeEECCCHHHHHHHHH------------cCCCEEEEecCCCCCCcCHHHHHHHHHHhC------cEEeeecCCHHHHH
Confidence 457777788888888773 3579999998652 267888999998752 56777778889999
Q ss_pred HHHHcCCce
Q 026776 131 RCLEDGAED 139 (233)
Q Consensus 131 ~al~~Ga~d 139 (233)
.|.++|+|-
T Consensus 107 ~A~~~G~D~ 115 (192)
T PF04131_consen 107 NAAELGFDI 115 (192)
T ss_dssp HHHHTT-SE
T ss_pred HHHHcCCCE
Confidence 999999763
No 271
>COG0157 NadC Nicotinate-nucleotide pyrophosphorylase [Coenzyme metabolism]
Probab=58.83 E-value=53 Score=28.18 Aligned_cols=70 Identities=14% Similarity=0.244 Sum_probs=49.5
Q ss_pred ccEEEE-cCCCCCC-CHHHHHHHHhccCCCCCCcEEEEeCCCcHHHHHHHHHcCCceEEeCCCCHHHHHHHHHHH
Q 026776 85 VDLIIT-DYCMPGM-TGYELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVKLSDVKRIKDYL 157 (233)
Q Consensus 85 ~Dlvll-D~~mp~~-~g~~ll~~Lr~~~~~~~~piIvlt~~~~~~~~~~al~~Ga~dyL~KP~~~~eL~~~~~~l 157 (233)
.|.|++ |-+.--. +--+.+++.|+..+ ..+.|=+ .-.+.++..+|+++|+|-.++--++++++.+++..+
T Consensus 158 sDavliKDNHia~~g~i~~Av~~aR~~~~--~~~kIEV-Evesle~~~eAl~agaDiImLDNm~~e~~~~av~~l 229 (280)
T COG0157 158 SDAVLIKDNHIAAAGSITEAVRRARAAAP--FTKKIEV-EVESLEEAEEALEAGADIIMLDNMSPEELKEAVKLL 229 (280)
T ss_pred cceEEehhhHHHHhccHHHHHHHHHHhCC--CCceEEE-EcCCHHHHHHHHHcCCCEEEecCCCHHHHHHHHHHh
Confidence 466666 4333322 33457888887654 4443333 445678889999999999999999999999888775
No 272
>PRK06106 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=58.71 E-value=1e+02 Score=26.56 Aligned_cols=91 Identities=16% Similarity=0.077 Sum_probs=53.7
Q ss_pred EEEEeCCHHHHHHHHHHH----hhcCC---EEEEECCHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCCCCCHHHHHH
Q 026776 32 VLAVDDSFVDRKVIERLL----TISSC---KVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLK 104 (233)
Q Consensus 32 ILIVddd~~~~~~l~~~L----~~~g~---~v~~a~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp~~~g~~ll~ 104 (233)
|||-|++-...-.+...+ +..++ -.+.+++.+++.+.+. ..+|+|++|- |...+--++++
T Consensus 167 vlikdNHi~~~G~i~~ai~~~r~~~~~~~kIeVEv~tleea~ea~~------------~gaDiI~LDn-~s~e~l~~av~ 233 (281)
T PRK06106 167 VLIKDNHIAIAGGVREAIRRARAGVGHLVKIEVEVDTLDQLEEALE------------LGVDAVLLDN-MTPDTLREAVA 233 (281)
T ss_pred hccCHHHHHHhCcHHHHHHHHHHhCCCCCcEEEEeCCHHHHHHHHH------------cCCCEEEeCC-CCHHHHHHHHH
Confidence 555555544333333333 22332 3356889999998872 3589999993 33222223333
Q ss_pred HHhccCCCCCCcEEEEeCCCcHHHHHHHHHcCCceEE
Q 026776 105 KIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFI 141 (233)
Q Consensus 105 ~Lr~~~~~~~~piIvlt~~~~~~~~~~al~~Ga~dyL 141 (233)
.++ . .. ++..++.-+.+.+.+..+.|+|-.-
T Consensus 234 ~~~---~--~~-~leaSGGI~~~ni~~yA~tGVD~Is 264 (281)
T PRK06106 234 IVA---G--RA-ITEASGRITPETAPAIAASGVDLIS 264 (281)
T ss_pred HhC---C--Cc-eEEEECCCCHHHHHHHHhcCCCEEE
Confidence 332 1 22 3677777788888888899987553
No 273
>PF03060 NMO: Nitronate monooxygenase; InterPro: IPR004136 2-Nitropropane dioxygenase (1.13.11.32 from EC) catalyses the oxidation of nitroalkanes into their corresponding carbonyl compounds and nitrite using eithr FAD or FMN as a cofactor []. This entry also includes fatty acid synthase subunit beta (2.3.1.86 from EC), which catalyses the formation of long- chain fatty acids from acetyl-CoA, malonyl-CoA and NADPH. The beta subunit contains domains for: [acyl-carrier protein] acetyltransferase and malonyltransferase, S-acyl fatty acid synthase thioesterase, enoyl-[acyl-carrier protein] reductase, and 3-hydroxypalmitoyl-[acyl-carrier protein] dehydratase. ; GO: 0018580 nitronate monooxygenase activity, 0055114 oxidation-reduction process; PDB: 2Z6I_B 2Z6J_B 3BW2_A 3BW3_A 3BW4_A 2GJL_A 2GJN_A 3BO9_A.
Probab=58.56 E-value=1e+02 Score=26.86 Aligned_cols=83 Identities=23% Similarity=0.238 Sum_probs=53.4
Q ss_pred HHHHhhcCCEE-EEECCHHHHHHHhhhhhhhhccCCCCCcccEEEEc-CCCC-----CC-CHHHHHHHHhccCCCCCCcE
Q 026776 46 ERLLTISSCKV-TAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITD-YCMP-----GM-TGYELLKKIKDSSALREIPV 117 (233)
Q Consensus 46 ~~~L~~~g~~v-~~a~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD-~~mp-----~~-~g~~ll~~Lr~~~~~~~~pi 117 (233)
.+.++..|..+ ..+.+.++|...+. ..+|.|++- ..-. .. +-+.++..+++.. .+||
T Consensus 129 i~~l~~~gi~v~~~v~s~~~A~~a~~------------~G~D~iv~qG~eAGGH~g~~~~~~~~L~~~v~~~~---~iPV 193 (330)
T PF03060_consen 129 IERLHAAGIKVIPQVTSVREARKAAK------------AGADAIVAQGPEAGGHRGFEVGSTFSLLPQVRDAV---DIPV 193 (330)
T ss_dssp HHHHHHTT-EEEEEESSHHHHHHHHH------------TT-SEEEEE-TTSSEE---SSG-HHHHHHHHHHH----SS-E
T ss_pred HHHHHHcCCccccccCCHHHHHHhhh------------cCCCEEEEeccccCCCCCccccceeeHHHHHhhhc---CCcE
Confidence 34566777644 46889999987762 348888875 2221 12 3577788887753 6899
Q ss_pred EEEeCCCcHHHHHHHHHcCCceEEeC
Q 026776 118 VIMSSENILARIDRCLEDGAEDFIVK 143 (233)
Q Consensus 118 Ivlt~~~~~~~~~~al~~Ga~dyL~K 143 (233)
|+--+-.+...+..++.+||+++..=
T Consensus 194 iaAGGI~dg~~iaaal~lGA~gV~~G 219 (330)
T PF03060_consen 194 IAAGGIADGRGIAAALALGADGVQMG 219 (330)
T ss_dssp EEESS--SHHHHHHHHHCT-SEEEES
T ss_pred EEecCcCCHHHHHHHHHcCCCEeecC
Confidence 88777778888999999999999753
No 274
>cd05013 SIS_RpiR RpiR-like protein. RpiR contains a SIS (Sugar ISomerase) domain, which is found in many phosphosugar isomerases and phosphosugar binding proteins. In E. coli, rpiR negatively regulates the expression of rpiB gene. Both rpiB and rpiA are ribose phosphate isomerases that catalyze the reversible reactions of ribose 5-phosphate into ribulose 5-phosphate.
Probab=58.40 E-value=67 Score=23.15 Aligned_cols=97 Identities=10% Similarity=-0.016 Sum_probs=56.3
Q ss_pred EEEEEe--CCHHHHHHHHHHHhhcCCEEEEECCHHHHHHHhhhhhhhhccCCCCCcccE-EEEcCCCCCCCHHHHHHHHh
Q 026776 31 HVLAVD--DSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDL-IITDYCMPGMTGYELLKKIK 107 (233)
Q Consensus 31 ~ILIVd--dd~~~~~~l~~~L~~~g~~v~~a~~~~~al~~l~~~~~~~~~~~~~~~~Dl-vllD~~mp~~~g~~ll~~Lr 107 (233)
+|+++. ........+...|...|..+....+.......... . ..-|+ |++...--..+..++++.++
T Consensus 15 ~i~i~g~g~s~~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~---------~-~~~~~~i~iS~~g~~~~~~~~~~~a~ 84 (139)
T cd05013 15 RIYIFGVGSSGLVAEYLAYKLLRLGKPVVLLSDPHLQLMSAAN---------L-TPGDVVIAISFSGETKETVEAAEIAK 84 (139)
T ss_pred EEEEEEcCchHHHHHHHHHHHHHcCCceEEecCHHHHHHHHHc---------C-CCCCEEEEEeCCCCCHHHHHHHHHHH
Confidence 345544 44566666777788888888887776655544311 1 12243 44454333445667777777
Q ss_pred ccCCCCCCcEEEEeCCCcHHHHHHHHHcCCceEEeCCCC
Q 026776 108 DSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVK 146 (233)
Q Consensus 108 ~~~~~~~~piIvlt~~~~~~~~~~al~~Ga~dyL~KP~~ 146 (233)
+. ..++|++|...+.... .-++..+.-|..
T Consensus 85 ~~----g~~iv~iT~~~~~~l~-----~~~d~~i~~~~~ 114 (139)
T cd05013 85 ER----GAKVIAITDSANSPLA-----KLADIVLLVSSE 114 (139)
T ss_pred Hc----CCeEEEEcCCCCChhH-----HhcCEEEEcCCC
Confidence 65 6789999997654322 234555544443
No 275
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=58.38 E-value=1.3e+02 Score=26.45 Aligned_cols=98 Identities=12% Similarity=0.089 Sum_probs=59.5
Q ss_pred EEEEEeCC----HHHHHHHHHHHhhcC-CEEEE--ECCHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCC--------
Q 026776 31 HVLAVDDS----FVDRKVIERLLTISS-CKVTA--VDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMP-------- 95 (233)
Q Consensus 31 ~ILIVddd----~~~~~~l~~~L~~~g-~~v~~--a~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp-------- 95 (233)
.++.||-- ....+.++.+-+.+. ..|.. +.+.+++..+.. ..+|.+.+-+.-.
T Consensus 113 d~i~iD~a~gh~~~~~e~I~~ir~~~p~~~vi~g~V~t~e~a~~l~~------------aGad~i~vg~~~G~~~~t~~~ 180 (326)
T PRK05458 113 EYITIDIAHGHSDSVINMIQHIKKHLPETFVIAGNVGTPEAVRELEN------------AGADATKVGIGPGKVCITKIK 180 (326)
T ss_pred CEEEEECCCCchHHHHHHHHHHHhhCCCCeEEEEecCCHHHHHHHHH------------cCcCEEEECCCCCcccccccc
Confidence 56667532 333333433333333 33332 567787777652 3467776542211
Q ss_pred ---CCC--HHHHHHHHhccCCCCCCcEEEEeCCCcHHHHHHHHHcCCceEEeC
Q 026776 96 ---GMT--GYELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVK 143 (233)
Q Consensus 96 ---~~~--g~~ll~~Lr~~~~~~~~piIvlt~~~~~~~~~~al~~Ga~dyL~K 143 (233)
+.. ++..+..+++.. ++|||.-.+-....++.+|+.+||+.+..-
T Consensus 181 ~g~~~~~w~l~ai~~~~~~~---~ipVIAdGGI~~~~Di~KaLa~GA~aV~vG 230 (326)
T PRK05458 181 TGFGTGGWQLAALRWCAKAA---RKPIIADGGIRTHGDIAKSIRFGATMVMIG 230 (326)
T ss_pred cCCCCCccHHHHHHHHHHHc---CCCEEEeCCCCCHHHHHHHHHhCCCEEEec
Confidence 112 455677777542 688888877788999999999999988654
No 276
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=58.35 E-value=1.2e+02 Score=25.90 Aligned_cols=106 Identities=11% Similarity=0.093 Sum_probs=49.8
Q ss_pred cEEEEEeCCHH---HHHHHHHHHhhcCCEEEEECCHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCCCCCHHHHHHHH
Q 026776 30 VHVLAVDDSFV---DRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKKI 106 (233)
Q Consensus 30 ~~ILIVddd~~---~~~~l~~~L~~~g~~v~~a~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp~~~g~~ll~~L 106 (233)
.++.+++-|.. ....++.+....++.+..+.+..+..+.+..-. ....+|+||+|..--.....+.++++
T Consensus 104 ~~v~~i~~D~~ri~~~~ql~~~~~~~~~~~~~~~~~~~l~~~l~~l~-------~~~~~D~ViIDt~Gr~~~~~~~l~el 176 (270)
T PRK06731 104 KTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFK-------EEARVDYILIDTAGKNYRASETVEEM 176 (270)
T ss_pred CeEEEEecCCCCHHHHHHHHHHhhhcCceEEecCCHHHHHHHHHHHH-------hcCCCCEEEEECCCCCcCCHHHHHHH
Confidence 45666654432 333445555556777766666544433331100 12358999999743222223344444
Q ss_pred hccCC--CCCCcEEEEeCCCcHHH---HHHHH-HcCCceEEe
Q 026776 107 KDSSA--LREIPVVIMSSENILAR---IDRCL-EDGAEDFIV 142 (233)
Q Consensus 107 r~~~~--~~~~piIvlt~~~~~~~---~~~al-~~Ga~dyL~ 142 (233)
++... .+.-.++++.+...... ..+.+ ..+.++++.
T Consensus 177 ~~~~~~~~~~~~~LVl~a~~~~~d~~~~~~~f~~~~~~~~I~ 218 (270)
T PRK06731 177 IETMGQVEPDYICLTLSASMKSKDMIEIITNFKDIHIDGIVF 218 (270)
T ss_pred HHHHhhhCCCeEEEEEcCccCHHHHHHHHHHhCCCCCCEEEE
Confidence 33211 11233556655433322 22332 356777643
No 277
>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=58.11 E-value=1.1e+02 Score=25.37 Aligned_cols=93 Identities=17% Similarity=0.156 Sum_probs=49.2
Q ss_pred HHhhcC-CEEEEECCHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCCCCCHHHHHHHHhccCCCCCCc--EEEEeCCC
Q 026776 48 LLTISS-CKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKKIKDSSALREIP--VVIMSSEN 124 (233)
Q Consensus 48 ~L~~~g-~~v~~a~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp~~~g~~ll~~Lr~~~~~~~~p--iIvlt~~~ 124 (233)
.|.+.+ .-|....+.++++..++.-- .. -+=++.+.+-.-++++.++.|++.... ..| +|-...--
T Consensus 11 ~l~~~~vi~Vvr~~~~~~a~~~~~al~--------~g--Gi~~iEiT~~tp~a~~~i~~l~~~~~~-~~p~~~vGaGTVl 79 (222)
T PRK07114 11 AMKATGMVPVFYHADVEVAKKVIKACY--------DG--GARVFEFTNRGDFAHEVFAELVKYAAK-ELPGMILGVGSIV 79 (222)
T ss_pred HHHhCCEEEEEEcCCHHHHHHHHHHHH--------HC--CCCEEEEeCCCCcHHHHHHHHHHHHHh-hCCCeEEeeEeCc
Confidence 344444 34445566666665543211 11 122445555566688888888632210 112 33333334
Q ss_pred cHHHHHHHHHcCCceEEeCCCCHHHHHH
Q 026776 125 ILARIDRCLEDGAEDFIVKPVKLSDVKR 152 (233)
Q Consensus 125 ~~~~~~~al~~Ga~dyL~KP~~~~eL~~ 152 (233)
+.+.+..++++|++ |+.-|....++.+
T Consensus 80 ~~e~a~~a~~aGA~-FiVsP~~~~~v~~ 106 (222)
T PRK07114 80 DAATAALYIQLGAN-FIVTPLFNPDIAK 106 (222)
T ss_pred CHHHHHHHHHcCCC-EEECCCCCHHHHH
Confidence 67888889999988 5555554445433
No 278
>PRK13143 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=58.06 E-value=28 Score=27.95 Aligned_cols=33 Identities=9% Similarity=0.202 Sum_probs=28.8
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhcCCEEEEECCH
Q 026776 30 VHVLAVDDSFVDRKVIERLLTISSCKVTAVDSG 62 (233)
Q Consensus 30 ~~ILIVddd~~~~~~l~~~L~~~g~~v~~a~~~ 62 (233)
++|+|||-.-.+...+.+.|+..|+++....+.
T Consensus 1 ~~~~v~~~~~~~~~~~~~~l~~~G~~~~~~~~~ 33 (200)
T PRK13143 1 MMIVIIDYGVGNLRSVSKALERAGAEVVITSDP 33 (200)
T ss_pred CeEEEEECCCccHHHHHHHHHHCCCeEEEECCH
Confidence 589999998888899999999999988888653
No 279
>PRK06849 hypothetical protein; Provisional
Probab=57.86 E-value=1.1e+02 Score=27.20 Aligned_cols=38 Identities=18% Similarity=0.111 Sum_probs=30.8
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHhhcCCEEEEECCHHHH
Q 026776 28 EEVHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRA 65 (233)
Q Consensus 28 ~~~~ILIVddd~~~~~~l~~~L~~~g~~v~~a~~~~~a 65 (233)
++++|||.+........+.+.|.+.|++|..+++....
T Consensus 3 ~~~~VLI~G~~~~~~l~iar~l~~~G~~Vi~~d~~~~~ 40 (389)
T PRK06849 3 TKKTVLITGARAPAALELARLFHNAGHTVILADSLKYP 40 (389)
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCchH
Confidence 46899999998877778888999999999888765433
No 280
>PLN02591 tryptophan synthase
Probab=57.77 E-value=1.1e+02 Score=25.64 Aligned_cols=99 Identities=11% Similarity=0.131 Sum_probs=58.8
Q ss_pred EEEEeCCHHHHHHHHHHHhhcCCEEE-EE-CCH-HHHHHHhhhhhhhhccCCCCCcccEEEE-c-CCCCC------CCHH
Q 026776 32 VLAVDDSFVDRKVIERLLTISSCKVT-AV-DSG-RRALQFLGLDEEQSINGFDGLKVDLIIT-D-YCMPG------MTGY 100 (233)
Q Consensus 32 ILIVddd~~~~~~l~~~L~~~g~~v~-~a-~~~-~~al~~l~~~~~~~~~~~~~~~~Dlvll-D-~~mp~------~~g~ 100 (233)
++|.|=.......+...+++.|.... ++ .+. ++=++.+. ....+.|-+ - ....+ .+-.
T Consensus 110 viipDLP~ee~~~~~~~~~~~gl~~I~lv~Ptt~~~ri~~ia-----------~~~~gFIY~Vs~~GvTG~~~~~~~~~~ 178 (250)
T PLN02591 110 LVVPDLPLEETEALRAEAAKNGIELVLLTTPTTPTERMKAIA-----------EASEGFVYLVSSTGVTGARASVSGRVE 178 (250)
T ss_pred EEeCCCCHHHHHHHHHHHHHcCCeEEEEeCCCCCHHHHHHHH-----------HhCCCcEEEeeCCCCcCCCcCCchhHH
Confidence 56666555666666677777775443 33 222 23333332 112233332 1 11111 1235
Q ss_pred HHHHHHhccCCCCCCcEEEEeCCCcHHHHHHHHHcCCceEEeCC
Q 026776 101 ELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKP 144 (233)
Q Consensus 101 ~ll~~Lr~~~~~~~~piIvlt~~~~~~~~~~al~~Ga~dyL~KP 144 (233)
++++.+|+. .++|+++=.+-.+.+.+.++.+.|||+.+.-.
T Consensus 179 ~~i~~vk~~---~~~Pv~vGFGI~~~e~v~~~~~~GADGvIVGS 219 (250)
T PLN02591 179 SLLQELKEV---TDKPVAVGFGISKPEHAKQIAGWGADGVIVGS 219 (250)
T ss_pred HHHHHHHhc---CCCceEEeCCCCCHHHHHHHHhcCCCEEEECH
Confidence 568888874 38899886666778889899999999999875
No 281
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=57.73 E-value=1.5e+02 Score=27.20 Aligned_cols=26 Identities=19% Similarity=0.202 Sum_probs=15.5
Q ss_pred CcccEEEEcCCCCCCCHHHHHHHHhc
Q 026776 83 LKVDLIITDYCMPGMTGYELLKKIKD 108 (233)
Q Consensus 83 ~~~DlvllD~~mp~~~g~~ll~~Lr~ 108 (233)
..+|+||+|..=-...--+++++++.
T Consensus 181 ~~~DvViIDTaGr~~~d~~lm~El~~ 206 (429)
T TIGR01425 181 ENFDIIIVDTSGRHKQEDSLFEEMLQ 206 (429)
T ss_pred CCCCEEEEECCCCCcchHHHHHHHHH
Confidence 46899999985322223345555554
No 282
>KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]
Probab=57.62 E-value=35 Score=30.97 Aligned_cols=57 Identities=18% Similarity=0.297 Sum_probs=39.4
Q ss_pred CCCcccEEEEcCCCCC-CCHHHHHHHHhccCCCCCCcEEEEeCCCcHHHHHHHHHcCCceE
Q 026776 81 DGLKVDLIITDYCMPG-MTGYELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDF 140 (233)
Q Consensus 81 ~~~~~DlvllD~~mp~-~~g~~ll~~Lr~~~~~~~~piIvlt~~~~~~~~~~al~~Ga~dy 140 (233)
.....|+|++|..-.. .--+++++++|+..+ ++.||. ..-...+.+...+.+|||+.
T Consensus 260 ~~aGvdvviLDSSqGnS~~qiemik~iK~~yP--~l~Via-GNVVT~~qa~nLI~aGaDgL 317 (503)
T KOG2550|consen 260 VQAGVDVVILDSSQGNSIYQLEMIKYIKETYP--DLQIIA-GNVVTKEQAANLIAAGADGL 317 (503)
T ss_pred hhcCCcEEEEecCCCcchhHHHHHHHHHhhCC--Cceeec-cceeeHHHHHHHHHccCcee
Confidence 4456899999975332 125789999998765 666653 12234567778899999975
No 283
>PF02581 TMP-TENI: Thiamine monophosphate synthase/TENI; InterPro: IPR003733 Thiamine monophosphate synthase (TMP) (2.5.1.3 from EC) catalyzes the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl)thiazole phosphate to yield thiamine phosphate in the thiamine biosynthesis pathway []. TENI, a protein from Bacillus subtilis that regulates the production of several extracellular enzymes by reducing alkaline protease production belongs to this group [].; GO: 0004789 thiamine-phosphate diphosphorylase activity, 0009228 thiamine biosynthetic process; PDB: 3NL5_A 3NL2_A 3NM1_A 3NM3_C 3NL6_B 3NL3_A 3CEU_A 3O63_B 3QH2_C 1YAD_D ....
Probab=57.25 E-value=93 Score=24.40 Aligned_cols=69 Identities=23% Similarity=0.264 Sum_probs=45.9
Q ss_pred EEECCHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCCCC-------CHHHHHHHHhccCCCCCCcEEEEeCCCcHHHH
Q 026776 57 TAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGM-------TGYELLKKIKDSSALREIPVVIMSSENILARI 129 (233)
Q Consensus 57 ~~a~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp~~-------~g~~ll~~Lr~~~~~~~~piIvlt~~~~~~~~ 129 (233)
..+.+.+++.+.. ...+|.|++.--.+.. -|++.++++.+.. .+|++++.+- +.+.+
T Consensus 100 ~S~h~~~e~~~a~------------~~g~dYv~~gpvf~T~sk~~~~~~g~~~l~~~~~~~---~~pv~AlGGI-~~~~i 163 (180)
T PF02581_consen 100 ASCHSLEEAREAE------------ELGADYVFLGPVFPTSSKPGAPPLGLDGLREIARAS---PIPVYALGGI-TPENI 163 (180)
T ss_dssp EEESSHHHHHHHH------------HCTTSEEEEETSS--SSSSS-TTCHHHHHHHHHHHT---SSCEEEESS---TTTH
T ss_pred eecCcHHHHHHhh------------hcCCCEEEECCccCCCCCccccccCHHHHHHHHHhC---CCCEEEEcCC-CHHHH
Confidence 4466777755543 2357999988765533 3899999988754 5899998664 34556
Q ss_pred HHHHHcCCceEE
Q 026776 130 DRCLEDGAEDFI 141 (233)
Q Consensus 130 ~~al~~Ga~dyL 141 (233)
..+.+.|++++-
T Consensus 164 ~~l~~~Ga~gvA 175 (180)
T PF02581_consen 164 PELREAGADGVA 175 (180)
T ss_dssp HHHHHTT-SEEE
T ss_pred HHHHHcCCCEEE
Confidence 778899999874
No 284
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=56.99 E-value=31 Score=31.99 Aligned_cols=57 Identities=18% Similarity=0.223 Sum_probs=40.5
Q ss_pred CCcccEEEEcCCCC-CCCHHHHHHHHhccCCCCCCcEEEEeCCCcHHHHHHHHHcCCceEE
Q 026776 82 GLKVDLIITDYCMP-GMTGYELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFI 141 (233)
Q Consensus 82 ~~~~DlvllD~~mp-~~~g~~ll~~Lr~~~~~~~~piIvlt~~~~~~~~~~al~~Ga~dyL 141 (233)
....|+|++|..-. ...-++++++||+..+ +++||. ..-...+....++++|||.+-
T Consensus 237 ~aGvd~i~~D~a~~~~~~~~~~i~~ik~~~p--~~~v~a-gnv~t~~~a~~l~~aGad~v~ 294 (479)
T PRK07807 237 EAGVDVLVVDTAHGHQEKMLEALRAVRALDP--GVPIVA-GNVVTAEGTRDLVEAGADIVK 294 (479)
T ss_pred HhCCCEEEEeccCCccHHHHHHHHHHHHHCC--CCeEEe-eccCCHHHHHHHHHcCCCEEE
Confidence 34689999997554 4556788999998654 555543 234567788889999999764
No 285
>PF01959 DHQS: 3-dehydroquinate synthase (EC 4.6.1.3); InterPro: IPR002812 3-Dehydroquinate synthase (4.2.3.4 from EC) is an enzyme in the common pathway of aromatic amino acid biosynthesis that catalyses the conversion of 3-deoxy-D-arabino-heptulosonic acid 7-phosphate (DAHP) into 3-dehydroquinic acid []. This synthesis of aromatic amino acids is an essential metabolic function for most prokaryotic as well as lower eukaryotic cells, including plants. The pathway is absent in humans; therefore, DHQS represents a potential target for the development of novel and selective antimicrobial agents. Owing to the threat posed by the spread of pathogenic bacteria resistant to many currently used antimicrobial drugs, there is clearly a need to develop new anti-infective drugs acting at novel targets. A further potential use for DHQS inhibitors is as herbicides [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process
Probab=56.92 E-value=59 Score=28.88 Aligned_cols=71 Identities=14% Similarity=0.259 Sum_probs=46.6
Q ss_pred ccEEEEcCCCCCCC-HHHHHHHHhccCCCCCCcEEEEeCCC-cHHHHHHHHHcCCceEEeCCCCHHHHHHHHHHHhh
Q 026776 85 VDLIITDYCMPGMT-GYELLKKIKDSSALREIPVVIMSSEN-ILARIDRCLEDGAEDFIVKPVKLSDVKRIKDYLTR 159 (233)
Q Consensus 85 ~DlvllD~~mp~~~-g~~ll~~Lr~~~~~~~~piIvlt~~~-~~~~~~~al~~Ga~dyL~KP~~~~eL~~~~~~l~~ 159 (233)
.+.++++..-+..= --.++..+... ...|+...... +.......++.|+|+.+++|-++.++.++...+..
T Consensus 97 ~~~~iv~~~Dw~iIPlEnliA~~~~~----~~~i~a~v~~~~eA~~~~~~LE~G~dGVll~~~d~~ei~~~~~~~~~ 169 (354)
T PF01959_consen 97 ADYVIVEFRDWTIIPLENLIAALQGS----STKIIAVVADAEEARVALEVLEKGVDGVLLDPDDPAEIKALVALLKE 169 (354)
T ss_pred CCeEEEEcCCCcEecHHHHHHHhcCC----CceEEEEeCCHHHHHHHHHHHhcCCCeEEECCCCHHHHHHHHHHHhh
Confidence 45555554433222 22345555432 44565555443 44566788899999999999999999988887766
No 286
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=56.83 E-value=1.3e+02 Score=27.62 Aligned_cols=98 Identities=14% Similarity=0.098 Sum_probs=58.8
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHhhcCCE-EE-EECCHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCCCCCHHHHHHH
Q 026776 28 EEVHVLAVDDSFVDRKVIERLLTISSCK-VT-AVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKK 105 (233)
Q Consensus 28 ~~~~ILIVddd~~~~~~l~~~L~~~g~~-v~-~a~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp~~~g~~ll~~ 105 (233)
+..+|.=||-.+...+..++..+..|.. +. .+.+.++...... ....||.||+|--=.|++ -++++.
T Consensus 314 ~~~~V~gvEi~~~aV~~A~~NA~~n~i~N~~f~~~~ae~~~~~~~----------~~~~~d~VvvDPPR~G~~-~~~lk~ 382 (432)
T COG2265 314 RVKKVHGVEISPEAVEAAQENAAANGIDNVEFIAGDAEEFTPAWW----------EGYKPDVVVVDPPRAGAD-REVLKQ 382 (432)
T ss_pred cCCEEEEEecCHHHHHHHHHHHHHcCCCcEEEEeCCHHHHhhhcc----------ccCCCCEEEECCCCCCCC-HHHHHH
Confidence 4567889999888888888888777753 43 3567666665541 235799999994322332 357888
Q ss_pred HhccCCCCCCcEEEEeCCCcHHHHHHHHHcCCceE
Q 026776 106 IKDSSALREIPVVIMSSENILARIDRCLEDGAEDF 140 (233)
Q Consensus 106 Lr~~~~~~~~piIvlt~~~~~~~~~~al~~Ga~dy 140 (233)
|.+..+ ..|+.+|.+. ...+..+...--.+|
T Consensus 383 l~~~~p---~~IvYVSCNP-~TlaRDl~~L~~~gy 413 (432)
T COG2265 383 LAKLKP---KRIVYVSCNP-ATLARDLAILASTGY 413 (432)
T ss_pred HHhcCC---CcEEEEeCCH-HHHHHHHHHHHhCCe
Confidence 876542 3345555443 333333333333334
No 287
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=56.68 E-value=1.7e+02 Score=27.16 Aligned_cols=44 Identities=16% Similarity=0.247 Sum_probs=30.4
Q ss_pred HHHHHHHhccCCCCCCcEEEEeCCCcHHHHHHHHHcCCceEEeC
Q 026776 100 YELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVK 143 (233)
Q Consensus 100 ~~ll~~Lr~~~~~~~~piIvlt~~~~~~~~~~al~~Ga~dyL~K 143 (233)
++++..+++......+|+|.=.+-....++.+|+.+||+.++.=
T Consensus 317 ~~~~~~~~~~~~~~~~~viadGGi~~~~di~kAla~GA~~v~~G 360 (486)
T PRK05567 317 ITAIADAAEAAKKYGIPVIADGGIRYSGDIAKALAAGASAVMLG 360 (486)
T ss_pred HHHHHHHHHHhccCCCeEEEcCCCCCHHHHHHHHHhCCCEEEEC
Confidence 44555554422122678877667778899999999999988654
No 288
>cd06336 PBP1_ABC_ligand_binding_like_3 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This group includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=56.66 E-value=1.3e+02 Score=25.92 Aligned_cols=66 Identities=11% Similarity=0.012 Sum_probs=42.2
Q ss_pred HHHHHHhhcCCEEEE-------ECCHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCCCC-CHHHHHHHHhccCCCCCC
Q 026776 44 VIERLLTISSCKVTA-------VDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGM-TGYELLKKIKDSSALREI 115 (233)
Q Consensus 44 ~l~~~L~~~g~~v~~-------a~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp~~-~g~~ll~~Lr~~~~~~~~ 115 (233)
.++..+++.|.++.. ..+....+..+ ....+|+|++-.. +. ++..+++.+++... ..
T Consensus 157 ~~~~~l~~~G~~vv~~~~~~~~~~D~s~~i~~i-----------~~~~~d~v~~~~~--~~~~~~~~~~~~~~~g~--~~ 221 (347)
T cd06336 157 AYKAAWEAAGGKVVSEEPYDPGTTDFSPIVTKL-----------LAEKPDVIFLGGP--SPAPAALVIKQARELGF--KG 221 (347)
T ss_pred HHHHHHHHcCCEEeeecccCCCCcchHHHHHHH-----------HhcCCCEEEEcCC--CchHHHHHHHHHHHcCC--Cc
Confidence 345566677876653 23555566665 3457899987543 44 68889999988754 55
Q ss_pred cEEEEeCCC
Q 026776 116 PVVIMSSEN 124 (233)
Q Consensus 116 piIvlt~~~ 124 (233)
+++.+....
T Consensus 222 ~~~~~~~~~ 230 (347)
T cd06336 222 GFLSCTGDK 230 (347)
T ss_pred cEEeccCCC
Confidence 666655443
No 289
>cd00532 MGS-like MGS-like domain. This domain composes the whole protein of methylglyoxal synthetase, which catalyzes the enolization of dihydroxyacetone phosphate (DHAP) to produce methylglyoxal. The family also includes the C-terminal domain in carbamoyl phosphate synthetase (CPS) where it catalyzes the last phosphorylation of a coaboxyphosphate intermediate to form the product carbamoyl phosphate and may also play a regulatory role. This family also includes inosine monophosphate cyclohydrolase. The known structures in this family show a common phosphate binding site.
Probab=56.55 E-value=72 Score=22.94 Aligned_cols=32 Identities=16% Similarity=0.043 Sum_probs=19.2
Q ss_pred eCCHHHHHHHHHHHhhcCCEEEEECCHHHHHH
Q 026776 36 DDSFVDRKVIERLLTISSCKVTAVDSGRRALQ 67 (233)
Q Consensus 36 ddd~~~~~~l~~~L~~~g~~v~~a~~~~~al~ 67 (233)
|.+......+...|...||.+.......+.|+
T Consensus 8 d~~K~~~~~~a~~l~~~G~~i~AT~gTa~~L~ 39 (112)
T cd00532 8 DHVKAMLVDLAPKLSSDGFPLFATGGTSRVLA 39 (112)
T ss_pred cccHHHHHHHHHHHHHCCCEEEECcHHHHHHH
Confidence 33444455566667788998875554444444
No 290
>PRK04128 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=56.40 E-value=1.1e+02 Score=25.15 Aligned_cols=67 Identities=16% Similarity=0.244 Sum_probs=45.8
Q ss_pred EEEEcCC-CC-C-CCHHHHHHHHhccCCCCCCcEEEEeCCCcHHHHHHHHHcCCceEEeCC--CCHHHHHHHHHH
Q 026776 87 LIITDYC-MP-G-MTGYELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKP--VKLSDVKRIKDY 156 (233)
Q Consensus 87 lvllD~~-mp-~-~~g~~ll~~Lr~~~~~~~~piIvlt~~~~~~~~~~al~~Ga~dyL~KP--~~~~eL~~~~~~ 156 (233)
++++|+. +- + ...+++++++.+. . .+|+++=.+-.+.+++.++++.|++..+.-- ++++.+.++.+.
T Consensus 46 l~ivDldga~~g~~~n~~~i~~i~~~-~--~~pv~~gGGIrs~edv~~l~~~G~~~vivGtaa~~~~~l~~~~~~ 117 (228)
T PRK04128 46 IHVVDLDGAFEGKPKNLDVVKNIIRE-T--GLKVQVGGGLRTYESIKDAYEIGVENVIIGTKAFDLEFLEKVTSE 117 (228)
T ss_pred EEEEECcchhcCCcchHHHHHHHHhh-C--CCCEEEcCCCCCHHHHHHHHHCCCCEEEECchhcCHHHHHHHHHH
Confidence 6777876 21 2 2467888888764 2 6788877677788899999999999887642 344444445443
No 291
>PF13433 Peripla_BP_5: Periplasmic binding protein domain; PDB: 1QNL_A 1QO0_A 1PEA_A.
Probab=56.37 E-value=23 Score=31.64 Aligned_cols=81 Identities=15% Similarity=0.244 Sum_probs=46.6
Q ss_pred cEEEEEeCCHHH----HHHHHHHHhhcCCEEEE---EC----CHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCCCCC
Q 026776 30 VHVLAVDDSFVD----RKVIERLLTISSCKVTA---VD----SGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMT 98 (233)
Q Consensus 30 ~~ILIVddd~~~----~~~l~~~L~~~g~~v~~---a~----~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp~~~ 98 (233)
-|+.+|..|-.. .+.++++++..|-++.. .. +....++.+ ...+||+|+.-+ -+.+
T Consensus 135 ~r~~lvGSdYv~pre~Nri~r~~l~~~GgevvgE~Y~plg~td~~~ii~~I-----------~~~~Pd~V~stl--vG~s 201 (363)
T PF13433_consen 135 KRFYLVGSDYVYPRESNRIIRDLLEARGGEVVGERYLPLGATDFDPIIAEI-----------KAAKPDFVFSTL--VGDS 201 (363)
T ss_dssp SEEEEEEESSHHHHHHHHHHHHHHHHTT-EEEEEEEE-S-HHHHHHHHHHH-----------HHHT-SEEEEE----TTC
T ss_pred ceEEEecCCccchHHHHHHHHHHHHHcCCEEEEEEEecCCchhHHHHHHHH-----------HhhCCCEEEEeC--cCCc
Confidence 689999888554 44566666677766543 22 333334444 445799999854 5788
Q ss_pred HHHHHHHHhccCCCC-CCcEEEEeCC
Q 026776 99 GYELLKKIKDSSALR-EIPVVIMSSE 123 (233)
Q Consensus 99 g~~ll~~Lr~~~~~~-~~piIvlt~~ 123 (233)
...|.+.++.....+ .+||+-++-.
T Consensus 202 ~~aF~r~~~~aG~~~~~~Pi~S~~~~ 227 (363)
T PF13433_consen 202 NVAFYRAYAAAGLDPERIPIASLSTS 227 (363)
T ss_dssp HHHHHHHHHHHH-SSS---EEESS--
T ss_pred HHHHHHHHHHcCCCcccCeEEEEecC
Confidence 899999998765332 4777766543
No 292
>cd03804 GT1_wbaZ_like This family is most closely related to the GT1 family of glycosyltransferases. wbaZ in Salmonella enterica has been shown to possess the mannosyl transferase activity. The members of this family are found in certain bacteria and Archaea.
Probab=56.09 E-value=1.2e+02 Score=25.94 Aligned_cols=65 Identities=8% Similarity=0.127 Sum_probs=41.9
Q ss_pred ccEEEEcCCCCCCCHHHHHHHHhccCCCCCCcEEEEeCCCcHHHHHHHHHcCCceEEeCCCCHHHHHHHHHHHhhh
Q 026776 85 VDLIITDYCMPGMTGYELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVKLSDVKRIKDYLTRD 160 (233)
Q Consensus 85 ~DlvllD~~mp~~~g~~ll~~Lr~~~~~~~~piIvlt~~~~~~~~~~al~~Ga~dyL~KP~~~~eL~~~~~~l~~~ 160 (233)
.|+.++-.. +.-|+.+++.+.. .+|+|....... .+.+..|..+++..|.+.+++.+.+..+...
T Consensus 262 ad~~v~ps~--e~~g~~~~Eama~-----G~Pvi~~~~~~~----~e~i~~~~~G~~~~~~~~~~la~~i~~l~~~ 326 (351)
T cd03804 262 ARAFLFPAE--EDFGIVPVEAMAS-----GTPVIAYGKGGA----LETVIDGVTGILFEEQTVESLAAAVERFEKN 326 (351)
T ss_pred CCEEEECCc--CCCCchHHHHHHc-----CCCEEEeCCCCC----cceeeCCCCEEEeCCCCHHHHHHHHHHHHhC
Confidence 577776443 3445666666543 678887543332 2334567789999999999998777766543
No 293
>PRK04457 spermidine synthase; Provisional
Probab=55.86 E-value=1.2e+02 Score=25.43 Aligned_cols=69 Identities=10% Similarity=0.089 Sum_probs=44.4
Q ss_pred CcEEEEEeCCHHHHHHHHHHHhhcC--CEEE-EECCHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCCC-----CCHH
Q 026776 29 EVHVLAVDDSFVDRKVIERLLTISS--CKVT-AVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPG-----MTGY 100 (233)
Q Consensus 29 ~~~ILIVddd~~~~~~l~~~L~~~g--~~v~-~a~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp~-----~~g~ 100 (233)
..+|..||-++...+..++.+...+ .++. ...++.+.+... ...||+|++|..-.. ....
T Consensus 90 ~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~~------------~~~yD~I~~D~~~~~~~~~~l~t~ 157 (262)
T PRK04457 90 DTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIAVH------------RHSTDVILVDGFDGEGIIDALCTQ 157 (262)
T ss_pred CCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHhC------------CCCCCEEEEeCCCCCCCccccCcH
Confidence 4679999999999988888875432 2332 345666665532 346999999963221 1235
Q ss_pred HHHHHHhcc
Q 026776 101 ELLKKIKDS 109 (233)
Q Consensus 101 ~ll~~Lr~~ 109 (233)
++++.+++.
T Consensus 158 efl~~~~~~ 166 (262)
T PRK04457 158 PFFDDCRNA 166 (262)
T ss_pred HHHHHHHHh
Confidence 677777654
No 294
>PRK04885 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=55.76 E-value=1.3e+02 Score=25.57 Aligned_cols=57 Identities=19% Similarity=0.278 Sum_probs=36.0
Q ss_pred cccEEEEcCCCCCCCHHHHHHHHhccCCC-CCCcEEEEeCCCcHHHHHHHHHcCCceEEeCCCCHHHHHHHHHHHhh
Q 026776 84 KVDLIITDYCMPGMTGYELLKKIKDSSAL-REIPVVIMSSENILARIDRCLEDGAEDFIVKPVKLSDVKRIKDYLTR 159 (233)
Q Consensus 84 ~~DlvllD~~mp~~~g~~ll~~Lr~~~~~-~~~piIvlt~~~~~~~~~~al~~Ga~dyL~KP~~~~eL~~~~~~l~~ 159 (233)
.+|++++ -|.|| .+++.+|..... ..+|++-+- .|-.+||. .++++++...++.+.+
T Consensus 35 ~~Dlvi~----iGGDG-T~L~a~~~~~~~~~~iPilGIN-------------~G~lGFL~-~~~~~~~~~~l~~i~~ 92 (265)
T PRK04885 35 NPDIVIS----VGGDG-TLLSAFHRYENQLDKVRFVGVH-------------TGHLGFYT-DWRPFEVDKLVIALAK 92 (265)
T ss_pred CCCEEEE----ECCcH-HHHHHHHHhcccCCCCeEEEEe-------------CCCceecc-cCCHHHHHHHHHHHHc
Confidence 4688776 36677 466666653321 377887663 35667777 4667777766666654
No 295
>PRK04180 pyridoxal biosynthesis lyase PdxS; Provisional
Probab=55.62 E-value=25 Score=30.28 Aligned_cols=42 Identities=26% Similarity=0.398 Sum_probs=33.5
Q ss_pred CHHHHHHHHhccCCCCCCcEE--EEeCCCcHHHHHHHHHcCCceEEe
Q 026776 98 TGYELLKKIKDSSALREIPVV--IMSSENILARIDRCLEDGAEDFIV 142 (233)
Q Consensus 98 ~g~~ll~~Lr~~~~~~~~piI--vlt~~~~~~~~~~al~~Ga~dyL~ 142 (233)
-++++++++++.. .+|+| ....-.+.+.+..+++.|++.++.
T Consensus 190 ~~~elL~ei~~~~---~iPVV~~AeGGI~TPedaa~vme~GAdgVaV 233 (293)
T PRK04180 190 APYELVKEVAELG---RLPVVNFAAGGIATPADAALMMQLGADGVFV 233 (293)
T ss_pred CCHHHHHHHHHhC---CCCEEEEEeCCCCCHHHHHHHHHhCCCEEEE
Confidence 4788899998743 68988 555556889999999999999964
No 296
>PRK09283 delta-aminolevulinic acid dehydratase; Validated
Probab=55.61 E-value=48 Score=28.97 Aligned_cols=66 Identities=23% Similarity=0.399 Sum_probs=47.5
Q ss_pred CCHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCCCCCHHHHHHHHhccCCCCCCcEEEEeCCCcHHHHHHHHHcCCce
Q 026776 60 DSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAED 139 (233)
Q Consensus 60 ~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp~~~g~~ll~~Lr~~~~~~~~piIvlt~~~~~~~~~~al~~Ga~d 139 (233)
.|..+|+..+..+- .+..|+|++- |++.-+++++.+|+.. .+|+.++--++....+..|.+.|..|
T Consensus 225 ~n~~eAlre~~~D~--------~EGAD~lMVK---Pal~YLDIi~~~k~~~---~~PvaaYqVSGEYaMikaAa~~G~~D 290 (323)
T PRK09283 225 ANRREALREVALDI--------EEGADMVMVK---PALPYLDIIRRVKDEF---NLPVAAYQVSGEYAMIKAAAQNGWID 290 (323)
T ss_pred CCHHHHHHHHHhhH--------HhCCCEEEEc---CCchHHHHHHHHHhcC---CCCEEEEEccHHHHHHHHHHHcCCCC
Confidence 36667776665442 3357999886 7777889999999864 68999987777666666777777544
No 297
>PRK11557 putative DNA-binding transcriptional regulator; Provisional
Probab=55.51 E-value=98 Score=25.96 Aligned_cols=84 Identities=11% Similarity=-0.048 Sum_probs=50.2
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhcCCEEEEECCHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCCC--CCHHHHHHHHh
Q 026776 30 VHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPG--MTGYELLKKIK 107 (233)
Q Consensus 30 ~~ILIVddd~~~~~~l~~~L~~~g~~v~~a~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp~--~~g~~ll~~Lr 107 (233)
+-|+=+.........+...|...|..+....+.......+.. -.+-|++|+ +...+ .+-.++++..+
T Consensus 131 I~i~G~G~s~~~A~~~~~~l~~~g~~~~~~~d~~~~~~~~~~----------~~~~Dv~I~-iS~sg~~~~~~~~~~~ak 199 (278)
T PRK11557 131 IILTGIGASGLVAQNFAWKLMKIGINAVAERDMHALLATVQA----------LSPDDLLLA-ISYSGERRELNLAADEAL 199 (278)
T ss_pred EEEEecChhHHHHHHHHHHHhhCCCeEEEcCChHHHHHHHHh----------CCCCCEEEE-EcCCCCCHHHHHHHHHHH
Confidence 333344555666777777777888888776665554433321 122355443 23333 34567777777
Q ss_pred ccCCCCCCcEEEEeCCCcHHH
Q 026776 108 DSSALREIPVVIMSSENILAR 128 (233)
Q Consensus 108 ~~~~~~~~piIvlt~~~~~~~ 128 (233)
+. ..++|++|+......
T Consensus 200 ~~----ga~iI~IT~~~~s~l 216 (278)
T PRK11557 200 RV----GAKVLAITGFTPNAL 216 (278)
T ss_pred Hc----CCCEEEEcCCCCCch
Confidence 64 779999999765443
No 298
>PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length. The function of this family is unknown.
Probab=55.28 E-value=1.2e+02 Score=25.10 Aligned_cols=66 Identities=17% Similarity=0.107 Sum_probs=39.2
Q ss_pred CCCcEEEEEeCCHHHHHHHHHHHhhcCC----EEEEECCHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCCCCCHH-H
Q 026776 27 TEEVHVLAVDDSFVDRKVIERLLTISSC----KVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGY-E 101 (233)
Q Consensus 27 ~~~~~ILIVddd~~~~~~l~~~L~~~g~----~v~~a~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp~~~g~-~ 101 (233)
+..-.|.|+.|... +....+.|...|. ++...+..++++..+ ...|.+++|.+. .+-. +
T Consensus 68 TgGR~vCIvp~~~~-~~~~~~~l~~~~~~~~vEfvvg~~~e~~~~~~-------------~~iDF~vVDc~~--~d~~~~ 131 (218)
T PF07279_consen 68 TGGRHVCIVPDEQS-LSEYKKALGEAGLSDVVEFVVGEAPEEVMPGL-------------KGIDFVVVDCKR--EDFAAR 131 (218)
T ss_pred cCCeEEEEcCChhh-HHHHHHHHhhccccccceEEecCCHHHHHhhc-------------cCCCEEEEeCCc--hhHHHH
Confidence 33444556655554 5555556665553 333344566677654 358999999984 4445 6
Q ss_pred HHHHHhc
Q 026776 102 LLKKIKD 108 (233)
Q Consensus 102 ll~~Lr~ 108 (233)
+++.++-
T Consensus 132 vl~~~~~ 138 (218)
T PF07279_consen 132 VLRAAKL 138 (218)
T ss_pred HHHHhcc
Confidence 7777664
No 299
>TIGR01306 GMP_reduct_2 guanosine monophosphate reductase, bacterial. A deep split separates two families of GMP reductase. The other (TIGR01305) is found in eukaryotic and some proteobacterial lineages, including E. coli, while this family is found in a variety of bacterial lineages.
Probab=55.16 E-value=39 Score=29.59 Aligned_cols=55 Identities=18% Similarity=0.156 Sum_probs=0.0
Q ss_pred ccEEEEcCCCC-CCCHHHHHHHHhccCCCCCCcEEEEeCCCcHHHHHHHHHcCCceEEe
Q 026776 85 VDLIITDYCMP-GMTGYELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIV 142 (233)
Q Consensus 85 ~DlvllD~~mp-~~~g~~ll~~Lr~~~~~~~~piIvlt~~~~~~~~~~al~~Ga~dyL~ 142 (233)
.|+|++|..-. ....++.+++||+.. ..++|+.-.-...+.+..++++|++.+..
T Consensus 109 ~d~i~~D~ahg~s~~~~~~i~~i~~~~---p~~~vi~GnV~t~e~a~~l~~aGad~I~V 164 (321)
T TIGR01306 109 PEYITIDIAHGHSNSVINMIKHIKTHL---PDSFVIAGNVGTPEAVRELENAGADATKV 164 (321)
T ss_pred CCEEEEeCccCchHHHHHHHHHHHHhC---CCCEEEEecCCCHHHHHHHHHcCcCEEEE
No 300
>PRK03372 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=55.14 E-value=1.4e+02 Score=25.91 Aligned_cols=109 Identities=16% Similarity=0.192 Sum_probs=55.6
Q ss_pred cEEEEEeC--CHH---HHHHHHHHHhhcCCEEEEECCHHHHHHHhhhhh-----h---hhccCCCCCcccEEEEcCCCCC
Q 026776 30 VHVLAVDD--SFV---DRKVIERLLTISSCKVTAVDSGRRALQFLGLDE-----E---QSINGFDGLKVDLIITDYCMPG 96 (233)
Q Consensus 30 ~~ILIVdd--d~~---~~~~l~~~L~~~g~~v~~a~~~~~al~~l~~~~-----~---~~~~~~~~~~~DlvllD~~mp~ 96 (233)
.+|+|+-. .+. ....+..+|...|+++.........+..-.... . ..... ....+|+||+ -|
T Consensus 6 ~~I~iv~~~~~~~~~~~~~~l~~~L~~~g~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~D~vi~----lG 80 (306)
T PRK03372 6 RRVLLVAHTGRDEATEAARRVAKQLGDAGIGVRVLDAEAVDLGATHPAPDDFRAMEVVDADPD-AADGCELVLV----LG 80 (306)
T ss_pred cEEEEEecCCCHHHHHHHHHHHHHHHHCCCEEEEeechhhhhcccccccccccccccccchhh-cccCCCEEEE----Ec
Confidence 34777733 232 345566667788988877654332221000000 0 00000 1124677776 36
Q ss_pred CCHHHHHHHHhccCCCCCCcEEEEeCCCcHHHHHHHHHcCCceEEeCCCCHHHHHHHHHHHhh
Q 026776 97 MTGYELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVKLSDVKRIKDYLTR 159 (233)
Q Consensus 97 ~~g~~ll~~Lr~~~~~~~~piIvlt~~~~~~~~~~al~~Ga~dyL~KP~~~~eL~~~~~~l~~ 159 (233)
.|| .+++..|.... ..+||+-+-. |=.+||.- +..+++...++.+.+
T Consensus 81 GDG-T~L~aar~~~~-~~~PilGIN~-------------G~lGFL~~-~~~~~~~~~l~~i~~ 127 (306)
T PRK03372 81 GDG-TILRAAELARA-ADVPVLGVNL-------------GHVGFLAE-AEAEDLDEAVERVVD 127 (306)
T ss_pred CCH-HHHHHHHHhcc-CCCcEEEEec-------------CCCceecc-CCHHHHHHHHHHHHc
Confidence 777 35555554332 3778887642 44566664 556677666666554
No 301
>PRK08072 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=55.03 E-value=1.4e+02 Score=25.64 Aligned_cols=93 Identities=11% Similarity=0.078 Sum_probs=56.5
Q ss_pred EEEEEeCCHHHHHHHHHHH----hhcCC---EEEEECCHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCCCCCHHHHH
Q 026776 31 HVLAVDDSFVDRKVIERLL----TISSC---KVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELL 103 (233)
Q Consensus 31 ~ILIVddd~~~~~~l~~~L----~~~g~---~v~~a~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp~~~g~~ll 103 (233)
.|||-|++-.....+...+ +..+. --..+.+.+++.+.. ...+|.|.+|- -|.+.+
T Consensus 160 ~vlikdnHi~~~g~~~~~v~~aR~~~~~~~~Igvsv~tleea~~A~------------~~gaDyI~lD~-----~~~e~l 222 (277)
T PRK08072 160 GVMIKDNHIAFCGSITKAVTSVREKLGHMVKIEVETETEEQVREAV------------AAGADIIMFDN-----RTPDEI 222 (277)
T ss_pred eEEEchhHHHhhCCHHHHHHHHHHhCCCCCEEEEEeCCHHHHHHHH------------HcCCCEEEECC-----CCHHHH
Confidence 4777777755544343333 23332 224577888887765 34589999972 355667
Q ss_pred HHHhccCCCCCCcEEEEeCCCcHHHHHHHHHcCCceEEe
Q 026776 104 KKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIV 142 (233)
Q Consensus 104 ~~Lr~~~~~~~~piIvlt~~~~~~~~~~al~~Ga~dyL~ 142 (233)
+++.+... ..+++ ...+.-+.+.+.+..+.|++.+-.
T Consensus 223 ~~~~~~~~-~~i~i-~AiGGIt~~ni~~~a~~Gvd~IAv 259 (277)
T PRK08072 223 REFVKLVP-SAIVT-EASGGITLENLPAYGGTGVDYISL 259 (277)
T ss_pred HHHHHhcC-CCceE-EEECCCCHHHHHHHHHcCCCEEEE
Confidence 77665321 12333 344455677888899999987743
No 302
>PLN02476 O-methyltransferase
Probab=54.75 E-value=1.4e+02 Score=25.63 Aligned_cols=57 Identities=14% Similarity=0.152 Sum_probs=40.0
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhcCCE--EE-EECCHHHHHHHhhhhhhhhccCCCCCcccEEEEcCC
Q 026776 30 VHVLAVDDSFVDRKVIERLLTISSCK--VT-AVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYC 93 (233)
Q Consensus 30 ~~ILIVddd~~~~~~l~~~L~~~g~~--v~-~a~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~ 93 (233)
-+|.-+|-++...+..++.++..|+. +. ...+..+.+..+.... ....||+||+|..
T Consensus 144 G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e~L~~l~~~~-------~~~~FD~VFIDa~ 203 (278)
T PLN02476 144 GCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAAESLKSMIQNG-------EGSSYDFAFVDAD 203 (278)
T ss_pred CEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcc-------cCCCCCEEEECCC
Confidence 36889999999999999999988863 43 3456666665542110 1247999999975
No 303
>PF00478 IMPDH: IMP dehydrogenase / GMP reductase domain; InterPro: IPR001093 Synonym(s): Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase; Synonym(s): Guanosine 5'-monophosphate oxidoreductase This entry contains two related enzymes IMP dehydrogenase and GMP reducatase. These enzymes adopt a TIM barrel structure. IMP dehydrogenase (1.1.1.205 from EC) (IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP []. Inosine 5-phosphate + NAD+ + H2O = xanthosine 5-phosphate + NADH IMP dehydrogenase is associated with cell proliferation and is a possible target for cancer chemotherapy. Mammalian and bacterial IMPDHs are tetramers of identical chains. There are two IMP dehydrogenase isozymes in humans []. IMP dehydrogenase nearly always contains a long insertion that has two CBS domains within it. GMP reductase (1.7.1.7 from EC) catalyzes the irreversible and NADPH-dependent reductive deamination of GMP into IMP []. NADPH + guanosine 5-phosphate = NADP+ + inosine 5-phosphate + NH3 It converts nucleobase, nucleoside and nucleotide derivatives of G to A nucleotides, and maintains intracellular balance of A and G nucleotides.; GO: 0003824 catalytic activity, 0055114 oxidation-reduction process; PDB: 3FFS_D 1VRD_A 1JCN_B 1EEP_B 3TSB_B 3USB_B 3TSD_A 4FF0_A 4FEZ_A 3KHJ_D ....
Probab=54.73 E-value=40 Score=29.97 Aligned_cols=57 Identities=23% Similarity=0.341 Sum_probs=38.8
Q ss_pred cccEEEEcCCCCCC-CHHHHHHHHhccCCCCCCcEEEEeCCCcHHHHHHHHHcCCceEEeC
Q 026776 84 KVDLIITDYCMPGM-TGYELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVK 143 (233)
Q Consensus 84 ~~DlvllD~~mp~~-~g~~ll~~Lr~~~~~~~~piIvlt~~~~~~~~~~al~~Ga~dyL~K 143 (233)
..|++++|..-... .-++.+++||+..+ +++||+ -.-.+.+.....+++|||....=
T Consensus 120 gvD~ivID~a~g~s~~~~~~ik~ik~~~~--~~~via-GNV~T~e~a~~L~~aGad~vkVG 177 (352)
T PF00478_consen 120 GVDVIVIDSAHGHSEHVIDMIKKIKKKFP--DVPVIA-GNVVTYEGAKDLIDAGADAVKVG 177 (352)
T ss_dssp T-SEEEEE-SSTTSHHHHHHHHHHHHHST--TSEEEE-EEE-SHHHHHHHHHTT-SEEEES
T ss_pred CCCEEEccccCccHHHHHHHHHHHHHhCC--CceEEe-cccCCHHHHHHHHHcCCCEEEEe
Confidence 57999999765433 35788999998765 677763 33456777888899999987664
No 304
>COG1737 RpiR Transcriptional regulators [Transcription]
Probab=54.02 E-value=1.3e+02 Score=25.64 Aligned_cols=84 Identities=14% Similarity=0.076 Sum_probs=55.8
Q ss_pred CcEEEEEeCCHHHHHHHHHHHhhcCCEEEEECCHHHHHHHhhhhhhhhccCCCCCcc-cEEEE-cCCCCCCCHHHHHHHH
Q 026776 29 EVHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKV-DLIIT-DYCMPGMTGYELLKKI 106 (233)
Q Consensus 29 ~~~ILIVddd~~~~~~l~~~L~~~g~~v~~a~~~~~al~~l~~~~~~~~~~~~~~~~-Dlvll-D~~mp~~~g~~ll~~L 106 (233)
.+-++-+.........+...|...|..+....+....+..+. ...+ |++|. ...=-..+-+++++..
T Consensus 132 rI~~~G~g~S~~vA~~~~~~l~~ig~~~~~~~d~~~~~~~~~-----------~~~~~Dv~i~iS~sG~t~e~i~~a~~a 200 (281)
T COG1737 132 RIYFFGLGSSGLVASDLAYKLMRIGLNVVALSDTHGQLMQLA-----------LLTPGDVVIAISFSGYTREIVEAAELA 200 (281)
T ss_pred eEEEEEechhHHHHHHHHHHHHHcCCceeEecchHHHHHHHH-----------hCCCCCEEEEEeCCCCcHHHHHHHHHH
Confidence 344555667788888888889999999988887776664332 2223 44433 3322234567788888
Q ss_pred hccCCCCCCcEEEEeCCCcHH
Q 026776 107 KDSSALREIPVVIMSSENILA 127 (233)
Q Consensus 107 r~~~~~~~~piIvlt~~~~~~ 127 (233)
++. +.++|.+|......
T Consensus 201 k~~----ga~vIaiT~~~~sp 217 (281)
T COG1737 201 KER----GAKVIAITDSADSP 217 (281)
T ss_pred HHC----CCcEEEEcCCCCCc
Confidence 775 67999999985433
No 305
>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein. This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.
Probab=53.94 E-value=1.4e+02 Score=25.46 Aligned_cols=49 Identities=10% Similarity=0.184 Sum_probs=35.5
Q ss_pred HHHHHHHhccCCCCCCcEEEEeCCCcHHHHHHHHHcCCce------EEeCCCCHHHHH
Q 026776 100 YELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAED------FIVKPVKLSDVK 151 (233)
Q Consensus 100 ~~ll~~Lr~~~~~~~~piIvlt~~~~~~~~~~al~~Ga~d------yL~KP~~~~eL~ 151 (233)
++.+.++++.- .+|||...+-.+.+++.+++..||+. ++.+|.-..++.
T Consensus 223 l~~v~~i~~~~---~ipvi~~GGI~s~~da~~~l~~GAd~V~igr~~l~~p~~~~~i~ 277 (300)
T TIGR01037 223 LRMVYDVYKMV---DIPIIGVGGITSFEDALEFLMAGASAVQVGTAVYYRGFAFKKII 277 (300)
T ss_pred HHHHHHHHhcC---CCCEEEECCCCCHHHHHHHHHcCCCceeecHHHhcCchHHHHHH
Confidence 35677777642 68999888888889999999999987 455674444443
No 306
>PLN02823 spermine synthase
Probab=53.73 E-value=1.5e+02 Score=26.15 Aligned_cols=54 Identities=22% Similarity=0.273 Sum_probs=34.8
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhc-----CCEEE-EECCHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCC
Q 026776 30 VHVLAVDDSFVDRKVIERLLTIS-----SCKVT-AVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMP 95 (233)
Q Consensus 30 ~~ILIVddd~~~~~~l~~~L~~~-----g~~v~-~a~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp 95 (233)
.+|.+||=|+.+.+..++.+... .-++. ...|+...++. ....||+||+|+.-|
T Consensus 128 ~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~------------~~~~yDvIi~D~~dp 187 (336)
T PLN02823 128 EKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEK------------RDEKFDVIIGDLADP 187 (336)
T ss_pred CeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhh------------CCCCccEEEecCCCc
Confidence 46888898988888888887532 12232 24455554432 234699999997544
No 307
>PF03102 NeuB: NeuB family; InterPro: IPR013132 NeuB is the prokaryotic N-acetylneuraminic acid synthase (Neu5Ac). It catalyses the direct formation of Neu5Ac (the most common sialic acid) by condensation of phosphoenolpyruvate (PEP) and N-acetylmannosamine (ManNAc). This reaction has only been observed in prokaryotes; eukaryotes synthesise the 9-phosphate form, Neu5Ac-9-P, and utilise ManNAc-6-P instead of ManNAc. Such eukaryotic enzymes are not present in this family []. This family also contains SpsE spore coat polysaccharide biosynthesis proteins.; GO: 0016051 carbohydrate biosynthetic process; PDB: 3G8R_B 1XUU_A 1XUZ_A 3CM4_A 2ZDR_A 1VLI_A 2WQP_A.
Probab=53.42 E-value=59 Score=27.24 Aligned_cols=101 Identities=21% Similarity=0.315 Sum_probs=55.4
Q ss_pred HHHHHHHHhhcCCEEEEECCHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCCCCCHHHHHHHHhccCCCCCCcEEEEe
Q 026776 42 RKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKKIKDSSALREIPVVIMS 121 (233)
Q Consensus 42 ~~~l~~~L~~~g~~v~~a~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp~~~g~~ll~~Lr~~~~~~~~piIvlt 121 (233)
-..|.++.++.|....+..-..+.++.+. .+++-++=+.-.+.+-+.+++.+.+. ..|||+=|
T Consensus 58 ~~~L~~~~~~~gi~f~stpfd~~s~d~l~-------------~~~~~~~KIaS~dl~n~~lL~~~A~t----gkPvIlST 120 (241)
T PF03102_consen 58 HKELFEYCKELGIDFFSTPFDEESVDFLE-------------ELGVPAYKIASGDLTNLPLLEYIAKT----GKPVILST 120 (241)
T ss_dssp HHHHHHHHHHTT-EEEEEE-SHHHHHHHH-------------HHT-SEEEE-GGGTT-HHHHHHHHTT-----S-EEEE-
T ss_pred HHHHHHHHHHcCCEEEECCCCHHHHHHHH-------------HcCCCEEEeccccccCHHHHHHHHHh----CCcEEEEC
Confidence 34456666778887776665667777762 24555556666778899999999874 67999888
Q ss_pred CCCcHHHHHHHH----HcCCceEEe------CCCCHHHHH-HHHHHHhh
Q 026776 122 SENILARIDRCL----EDGAEDFIV------KPVKLSDVK-RIKDYLTR 159 (233)
Q Consensus 122 ~~~~~~~~~~al----~~Ga~dyL~------KP~~~~eL~-~~~~~l~~ 159 (233)
+-...+++.+++ +.|..++.. .|...+++. +.+..+.+
T Consensus 121 G~stl~EI~~Av~~~~~~~~~~l~llHC~s~YP~~~e~~NL~~i~~L~~ 169 (241)
T PF03102_consen 121 GMSTLEEIERAVEVLREAGNEDLVLLHCVSSYPTPPEDVNLRVIPTLKE 169 (241)
T ss_dssp TT--HHHHHHHHHHHHHHCT--EEEEEE-SSSS--GGG--TTHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHhcCCCCEEEEecCCCCCCChHHcChHHHHHHHH
Confidence 887766655544 456666543 466666652 44555543
No 308
>PRK07765 para-aminobenzoate synthase component II; Provisional
Probab=53.27 E-value=39 Score=27.54 Aligned_cols=32 Identities=13% Similarity=0.016 Sum_probs=25.7
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhcCCEEEEECC
Q 026776 30 VHVLAVDDSFVDRKVIERLLTISSCKVTAVDS 61 (233)
Q Consensus 30 ~~ILIVddd~~~~~~l~~~L~~~g~~v~~a~~ 61 (233)
++||++|........+...|.+.|+.+.....
T Consensus 1 ~~ilv~d~~~~~~~~~~~~l~~~G~~~~~~~~ 32 (214)
T PRK07765 1 MRILVVDNYDSFVFNLVQYLGQLGVEAEVWRN 32 (214)
T ss_pred CeEEEEECCCcHHHHHHHHHHHcCCcEEEEEC
Confidence 57999998877777888899999987776543
No 309
>cd06382 PBP1_iGluR_Kainate N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the kainate receptors. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the kainate receptors, non-NMDA ionotropic receptors which respond to the neurotransmitter glutamate. While this N-terminal domain belongs to the periplasmic-binding fold type I superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type II. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. Kainate receptors have five subunits, GluR5, GluR6, GluR7, KA1, and KA2, which are structurally similar to AMPA and NMDA subunits of ionotropic glutamate receptors. KA1 and KA2 subunits can only form functional receptors with one of the GluR5-7 subunits. Moreover, GluR5-7 can also form functional homomeri
Probab=53.20 E-value=1.4e+02 Score=25.35 Aligned_cols=68 Identities=21% Similarity=0.158 Sum_probs=38.4
Q ss_pred EEEEEeCCHHHHHHHHHHHhhcCC---EEEE--EC---CHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCCCCCHHHH
Q 026776 31 HVLAVDDSFVDRKVIERLLTISSC---KVTA--VD---SGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYEL 102 (233)
Q Consensus 31 ~ILIVddd~~~~~~l~~~L~~~g~---~v~~--a~---~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp~~~g~~l 102 (233)
+|.++-++......+.++++..+. .+.. +. +....+..+ ....+|+|++... ..+...+
T Consensus 131 ~vavl~~~~~~~~~l~~~~~~~~~~g~~v~~~~~~~~~d~~~~l~~i-----------~~~~~d~vv~~~~--~~~~~~~ 197 (327)
T cd06382 131 SFTIIYESAEGLLRLQELLQAFGISGITITVRQLDDDLDYRPLLKEI-----------KNSGDNRIIIDCS--ADILIEL 197 (327)
T ss_pred EEEEEecChHHHHHHHHHHHhhccCCCeEEEEEccCCccHHHHHHHH-----------HhcCceEEEEECC--HHHHHHH
Confidence 455554444456667777765543 2222 22 344445554 3456788887543 4557777
Q ss_pred HHHHhccCC
Q 026776 103 LKKIKDSSA 111 (233)
Q Consensus 103 l~~Lr~~~~ 111 (233)
++++++...
T Consensus 198 ~~qa~~~g~ 206 (327)
T cd06382 198 LKQAQQVGM 206 (327)
T ss_pred HHHHHHhCc
Confidence 888777654
No 310
>PRK14569 D-alanyl-alanine synthetase A; Provisional
Probab=53.17 E-value=1.1e+02 Score=26.10 Aligned_cols=42 Identities=24% Similarity=0.206 Sum_probs=28.9
Q ss_pred HHHHHHHHHHhhcCCEEEEEC-CHHHHHHHhhhhhhhhccCCCCCcccEEEEcC
Q 026776 40 VDRKVIERLLTISSCKVTAVD-SGRRALQFLGLDEEQSINGFDGLKVDLIITDY 92 (233)
Q Consensus 40 ~~~~~l~~~L~~~g~~v~~a~-~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~ 92 (233)
.....+.+.|.+.||++..++ +..+.+..+ ....+|+++.-+
T Consensus 22 ~s~~~v~~aL~~~g~~~~~~~~~~~~~~~~l-----------~~~~~d~vf~~l 64 (296)
T PRK14569 22 KSGKAVLDSLISQGYDAVGVDASGKELVAKL-----------LELKPDKCFVAL 64 (296)
T ss_pred HHHHHHHHHHHHcCCEEEEEcCCchhHHHHh-----------hccCCCEEEEeC
Confidence 455667777888999988876 334555544 345799988855
No 311
>COG3967 DltE Short-chain dehydrogenase involved in D-alanine esterification of lipoteichoic acid and wall teichoic acid (D-alanine transfer protein) [Cell envelope biogenesis, outer membrane]
Probab=52.91 E-value=87 Score=25.97 Aligned_cols=78 Identities=12% Similarity=0.077 Sum_probs=54.9
Q ss_pred CcEEEEEeCCHHHHHHHHHHHhhcCCEEEEECCHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCCCCCHH-HHHHHHh
Q 026776 29 EVHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGY-ELLKKIK 107 (233)
Q Consensus 29 ~~~ILIVddd~~~~~~l~~~L~~~g~~v~~a~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp~~~g~-~ll~~Lr 107 (233)
.-.|||=..-......+.+.|.+.|-.|..+.--++.|+.... ......-.++|+ .+.++. ++..+|+
T Consensus 5 gnTiLITGG~sGIGl~lak~f~elgN~VIi~gR~e~~L~e~~~---------~~p~~~t~v~Dv--~d~~~~~~lvewLk 73 (245)
T COG3967 5 GNTILITGGASGIGLALAKRFLELGNTVIICGRNEERLAEAKA---------ENPEIHTEVCDV--ADRDSRRELVEWLK 73 (245)
T ss_pred CcEEEEeCCcchhhHHHHHHHHHhCCEEEEecCcHHHHHHHHh---------cCcchheeeecc--cchhhHHHHHHHHH
Confidence 4568888888888888999999999999888877777776631 112233455664 455554 5889998
Q ss_pred ccCCCCCCcEEE
Q 026776 108 DSSALREIPVVI 119 (233)
Q Consensus 108 ~~~~~~~~piIv 119 (233)
+..+ .+-+++
T Consensus 74 k~~P--~lNvli 83 (245)
T COG3967 74 KEYP--NLNVLI 83 (245)
T ss_pred hhCC--chheee
Confidence 8765 666654
No 312
>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG. This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.
Probab=52.77 E-value=1.3e+02 Score=25.52 Aligned_cols=60 Identities=20% Similarity=0.296 Sum_probs=37.0
Q ss_pred HHHHhhcCCEEEEECC-------HHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCCCCCHHHHHHHHhccCCCCCCcEE
Q 026776 46 ERLLTISSCKVTAVDS-------GRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKKIKDSSALREIPVV 118 (233)
Q Consensus 46 ~~~L~~~g~~v~~a~~-------~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp~~~g~~ll~~Lr~~~~~~~~piI 118 (233)
.+.++..|+.|....+ ..+.++.+ ...+||+||+|.- ..+. +..+.++.. ..+++
T Consensus 46 ~~~i~~~g~~v~~~~~~~~~~~d~~~~~~~l-----------~~~~~d~vV~D~y--~~~~-~~~~~~k~~----~~~l~ 107 (279)
T TIGR03590 46 IDLLLSAGFPVYELPDESSRYDDALELINLL-----------EEEKFDILIVDHY--GLDA-DWEKLIKEF----GRKIL 107 (279)
T ss_pred HHHHHHcCCeEEEecCCCchhhhHHHHHHHH-----------HhcCCCEEEEcCC--CCCH-HHHHHHHHh----CCeEE
Confidence 4566788888876643 33455555 4457999999974 3333 355666643 34666
Q ss_pred EEeCC
Q 026776 119 IMSSE 123 (233)
Q Consensus 119 vlt~~ 123 (233)
++...
T Consensus 108 ~iDD~ 112 (279)
T TIGR03590 108 VIDDL 112 (279)
T ss_pred EEecC
Confidence 66654
No 313
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=52.60 E-value=88 Score=26.00 Aligned_cols=56 Identities=13% Similarity=0.398 Sum_probs=35.0
Q ss_pred HHHHHHhccCCCCCCcEEEEe-----CCCcHHHHHHHHHcCCceEEeC--CCC-HHHHHHHHHHHhh
Q 026776 101 ELLKKIKDSSALREIPVVIMS-----SENILARIDRCLEDGAEDFIVK--PVK-LSDVKRIKDYLTR 159 (233)
Q Consensus 101 ~ll~~Lr~~~~~~~~piIvlt-----~~~~~~~~~~al~~Ga~dyL~K--P~~-~~eL~~~~~~l~~ 159 (233)
++++.+|+. ..+|+++++ ..+-...+..+.++|++.++.- |++ .+++.++++.+.+
T Consensus 64 ~~v~~vr~~---~~~Pl~lM~y~n~~~~~~~~~i~~~~~~Gadgvii~dlp~e~~~~~~~~~~~~~~ 127 (244)
T PRK13125 64 PLLEEVRKD---VSVPIILMTYLEDYVDSLDNFLNMARDVGADGVLFPDLLIDYPDDLEKYVEIIKN 127 (244)
T ss_pred HHHHHHhcc---CCCCEEEEEecchhhhCHHHHHHHHHHcCCCEEEECCCCCCcHHHHHHHHHHHHH
Confidence 467777743 267876553 2233455778889999999985 333 3566566555543
No 314
>cd01572 QPRTase Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=52.45 E-value=65 Score=27.40 Aligned_cols=54 Identities=15% Similarity=0.302 Sum_probs=39.8
Q ss_pred HHHHHHhccCCCCCCcEEEEeCCCcHHHHHHHHHcCCceEEeCCCCHHHHHHHHHHH
Q 026776 101 ELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVKLSDVKRIKDYL 157 (233)
Q Consensus 101 ~ll~~Lr~~~~~~~~piIvlt~~~~~~~~~~al~~Ga~dyL~KP~~~~eL~~~~~~l 157 (233)
..++.+|+..+ ...+|.++.+. .+++.++.+.|+|....-|+.++++.+++..+
T Consensus 170 ~~v~~~r~~~~--~~~~Igvev~s-~eea~~A~~~gaDyI~ld~~~~e~l~~~~~~~ 223 (268)
T cd01572 170 EAVRRARAAAP--FTLKIEVEVET-LEQLKEALEAGADIIMLDNMSPEELREAVALL 223 (268)
T ss_pred HHHHHHHHhCC--CCCeEEEEECC-HHHHHHHHHcCCCEEEECCcCHHHHHHHHHHc
Confidence 35677776543 23456666654 46778899999999999999999998887655
No 315
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=52.43 E-value=1.4e+02 Score=25.08 Aligned_cols=43 Identities=26% Similarity=0.374 Sum_probs=32.0
Q ss_pred HHHHHHHHhccCCCCCCcEEEEeCCCcHHHHHHHHHcCCceEEeCC
Q 026776 99 GYELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKP 144 (233)
Q Consensus 99 g~~ll~~Lr~~~~~~~~piIvlt~~~~~~~~~~al~~Ga~dyL~KP 144 (233)
-.+.++++|+.. ..||++=.+-.+.+.+.++.+.|||+++.-.
T Consensus 186 ~~~~i~~lr~~~---~~pi~vgfGI~~~e~~~~~~~~GADgvVvGS 228 (256)
T TIGR00262 186 LNELVKRLKAYS---AKPVLVGFGISKPEQVKQAIDAGADGVIVGS 228 (256)
T ss_pred HHHHHHHHHhhc---CCCEEEeCCCCCHHHHHHHHHcCCCEEEECH
Confidence 467788888753 5576654444557888999999999999875
No 316
>PRK15482 transcriptional regulator MurR; Provisional
Probab=52.38 E-value=1.4e+02 Score=25.14 Aligned_cols=85 Identities=11% Similarity=-0.007 Sum_probs=51.6
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhcCCEEEEECCHHHHHHHhhhhhhhhccCCCCCcccEEE-EcCCCCCCCHHHHHHHHhc
Q 026776 30 VHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLII-TDYCMPGMTGYELLKKIKD 108 (233)
Q Consensus 30 ~~ILIVddd~~~~~~l~~~L~~~g~~v~~a~~~~~al~~l~~~~~~~~~~~~~~~~Dlvl-lD~~mp~~~g~~ll~~Lr~ 108 (233)
+-|+=+.........+...|...|+.+....+......... .-.+=|++| +...--..+-+++++..++
T Consensus 138 I~i~G~G~S~~~A~~l~~~l~~~g~~~~~~~d~~~~~~~~~----------~~~~~Dv~i~iS~sg~t~~~~~~~~~a~~ 207 (285)
T PRK15482 138 IQITGLGGSALVGRDLSFKLMKIGYRVACEADTHVQATVSQ----------ALKKGDVQIAISYSGSKKEIVLCAEAARK 207 (285)
T ss_pred eEEEEeChhHHHHHHHHHHHHhCCCeeEEeccHhHHHHHHh----------cCCCCCEEEEEeCCCCCHHHHHHHHHHHH
Confidence 33444455677777777778888888877665544333221 011225544 3443334456778888876
Q ss_pred cCCCCCCcEEEEeCCCcHHH
Q 026776 109 SSALREIPVVIMSSENILAR 128 (233)
Q Consensus 109 ~~~~~~~piIvlt~~~~~~~ 128 (233)
. +.++|.+|.......
T Consensus 208 ~----g~~iI~IT~~~~s~l 223 (285)
T PRK15482 208 Q----GATVIAITSLADSPL 223 (285)
T ss_pred C----CCEEEEEeCCCCCch
Confidence 5 679999998775443
No 317
>TIGR01761 thiaz-red thiazolinyl imide reductase. This reductase is found associated with gene clusters for the biosynthesis of various non-ribosomal peptide derived natural products in which cysteine is cyclized to a thiazoline ring containing an imide double bond. Examples include yersiniabactin (irp3/YbtU) and pyochelin (PchG).
Probab=52.14 E-value=1.7e+02 Score=25.88 Aligned_cols=47 Identities=19% Similarity=0.246 Sum_probs=34.7
Q ss_pred CCcEEEEeC----CCcHHHHHHHHHcCCceEEeCCCCHHHHHHHHHHHhhh
Q 026776 114 EIPVVIMSS----ENILARIDRCLEDGAEDFIVKPVKLSDVKRIKDYLTRD 160 (233)
Q Consensus 114 ~~piIvlt~----~~~~~~~~~al~~Ga~dyL~KP~~~~eL~~~~~~l~~~ 160 (233)
++-+|.+.. ....+.+.+|+++|..=++.||+..+|..++++...+.
T Consensus 64 Di~~V~ipt~~P~~~H~e~a~~aL~aGkHVL~EKPla~~Ea~el~~~A~~~ 114 (343)
T TIGR01761 64 DIACVVVRSAIVGGQGSALARALLARGIHVLQEHPLHPRDIQDLLRLAERQ 114 (343)
T ss_pred CEEEEEeCCCCCCccHHHHHHHHHhCCCeEEEcCCCCHHHHHHHHHHHHHc
Confidence 555555522 23467888999999999999999988887777766653
No 318
>cd04823 ALAD_PBGS_aspartate_rich Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the biosynthesis of tetrapyrroles, such as heme, vitamin B12 and chlorophyll. This reaction involves the formation of a Schiff base link between the substrate and the enzyme. PBGSs are metalloenzymes, some of which have a second, allosteric metal binding site, beside the metal ion binding site in their active site. Although PBGS is a family of homologous enzymes, its metal ion utilization at catalytic site varies between zinc and magnesium and/or potassium. PBGS can be classified into two groups based on differences in their active site metal binding site. All of PBGS_aspartate_rich contain an aspartate rich metal binding site with the general sequence DXALDX(Y/F)X3G(H/Q)DG. They also contain an allosteric magnesiu
Probab=52.11 E-value=59 Score=28.38 Aligned_cols=66 Identities=23% Similarity=0.402 Sum_probs=47.5
Q ss_pred CHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCCCCCHHHHHHHHhccCCCCCCcEEEEeCCCcHHHHHHHHHcCCceE
Q 026776 61 SGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDF 140 (233)
Q Consensus 61 ~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp~~~g~~ll~~Lr~~~~~~~~piIvlt~~~~~~~~~~al~~Ga~dy 140 (233)
+..+|+.....+- .+..|+|++- |.+.-+++++.+|+.. .+|+.++--++....+..|-+.|..|+
T Consensus 223 n~~eAlre~~~Di--------~EGAD~lMVK---Pal~YLDIi~~~k~~~---~lPvaaYqVSGEYaMikaAa~~G~~d~ 288 (320)
T cd04823 223 NSREALREVALDI--------AEGADMVMVK---PGMPYLDIIRRVKDEF---GVPTFAYQVSGEYAMLKAAAQNGWLDE 288 (320)
T ss_pred CHHHHHHHHHhhH--------HhCCCEEEEc---CCchHHHHHHHHHHhc---CCCEEEEEccHHHHHHHHHHHcCCCcH
Confidence 5666766665442 2357899886 7777888999999864 799999877777677777777776543
No 319
>PRK14329 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=51.98 E-value=1.1e+02 Score=28.14 Aligned_cols=97 Identities=18% Similarity=0.243 Sum_probs=57.9
Q ss_pred eCCHHHHHHHHHHHhhcCCEEEEECCHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCCCCC----HHHHH---HHHhc
Q 026776 36 DDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMT----GYELL---KKIKD 108 (233)
Q Consensus 36 ddd~~~~~~l~~~L~~~g~~v~~a~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp~~~----g~~ll---~~Lr~ 108 (233)
-=|....+.|...|...||.+.. + ....|+|++...-.-.+ -...+ +.+++
T Consensus 34 ~~N~~dse~~~~~l~~~G~~~~~--~--------------------~~~ADiviiNTC~v~~~a~~k~~~~i~~~~~~k~ 91 (467)
T PRK14329 34 QMNFADSEIVASILQMAGYNTTE--N--------------------LEEADLVLVNTCSIRDNAEQKVRKRLEKFNALKK 91 (467)
T ss_pred CCcHHHHHHHHHHHHHCcCEECC--C--------------------cccCCEEEEeCcceechHHHHHHHHHHHHHHHHh
Confidence 35777788888899888987642 1 12469999987554322 23334 44444
Q ss_pred cCCCCCCcEEEEeCCCcHHHHHHHHHc-CCceEEeCCCCHHHHHHHHHHH
Q 026776 109 SSALREIPVVIMSSENILARIDRCLED-GAEDFIVKPVKLSDVKRIKDYL 157 (233)
Q Consensus 109 ~~~~~~~piIvlt~~~~~~~~~~al~~-Ga~dyL~KP~~~~eL~~~~~~l 157 (233)
..+ ... |++++......-.+.++. +..||+..+-....+..++..+
T Consensus 92 ~~p--~~~-ivvgGc~a~~~~~~~l~~~~~vD~vv~~e~~~~i~~ll~~~ 138 (467)
T PRK14329 92 KNP--KLI-VGVLGCMAERLKDKLLEEEKIVDLVVGPDAYLDLPNLIAEV 138 (467)
T ss_pred hCC--CcE-EEEECChhcCcHHHHHhcCCCceEEECCCCHHHHHHHHHHH
Confidence 433 444 445544332333344444 4378888888777777766554
No 320
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=51.93 E-value=1.4e+02 Score=24.99 Aligned_cols=59 Identities=15% Similarity=0.083 Sum_probs=40.6
Q ss_pred CcEEEEEeCCHHHHHHHHHHHhhcCC--EEE-EECCHHHHHHHhhhhhhhhccCCCCCcccEEEEcCC
Q 026776 29 EVHVLAVDDSFVDRKVIERLLTISSC--KVT-AVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYC 93 (233)
Q Consensus 29 ~~~ILIVddd~~~~~~l~~~L~~~g~--~v~-~a~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~ 93 (233)
.-+|.-+|-++.....-+..++..|+ .|. ...+..+.+..+..... ....||+||+|..
T Consensus 104 ~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~e~L~~l~~~~~------~~~~fD~iFiDad 165 (247)
T PLN02589 104 DGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDQMIEDGK------YHGTFDFIFVDAD 165 (247)
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccHHHHHHHHHhccc------cCCcccEEEecCC
Confidence 35799999999888888889988874 343 34566666665521100 1247999999976
No 321
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=51.86 E-value=1.2e+02 Score=27.25 Aligned_cols=56 Identities=16% Similarity=0.024 Sum_probs=28.4
Q ss_pred CcccEEEEcCCCCCCCHHHHHHHHhccCCCCCCcEEEEeCCCcHHHHHHH---HHcCCceEE
Q 026776 83 LKVDLIITDYCMPGMTGYELLKKIKDSSALREIPVVIMSSENILARIDRC---LEDGAEDFI 141 (233)
Q Consensus 83 ~~~DlvllD~~mp~~~g~~ll~~Lr~~~~~~~~piIvlt~~~~~~~~~~a---l~~Ga~dyL 141 (233)
..+|.|++-..-. .....++...|...+ ...+|+.+.........+. .+.|++..+
T Consensus 64 ~~a~~vi~~~~~~-~~n~~~~~~~r~~~~--~~~ii~~~~~~~~~~~~~l~~~~~~G~~~vi 122 (453)
T PRK09496 64 EDADLLIAVTDSD-ETNMVACQIAKSLFG--APTTIARVRNPEYAEYDKLFSKEALGIDLLI 122 (453)
T ss_pred CcCCEEEEecCCh-HHHHHHHHHHHHhcC--CCeEEEEECCccccchhhhhhhhcCCccEEE
Confidence 3577777754322 223334455565433 5667766654332122222 457888655
No 322
>PRK00994 F420-dependent methylenetetrahydromethanopterin dehydrogenase; Provisional
Probab=51.53 E-value=32 Score=28.80 Aligned_cols=62 Identities=16% Similarity=0.259 Sum_probs=40.5
Q ss_pred CCCcccEEEEcCCCCCCCHHHHHHHHhccCCCCCCcEEEEeCCCcHHHHHHHHHcCCceEEeCCCC
Q 026776 81 DGLKVDLIITDYCMPGMTGYELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVK 146 (233)
Q Consensus 81 ~~~~~DlvllD~~mp~~~g~~ll~~Lr~~~~~~~~piIvlt~~~~~~~~~~al~~Ga~dyL~KP~~ 146 (233)
..+.||++|+=---+..-|-.-.+++-+.. .+|.|+++........ ++++..-.+|+.-+.+
T Consensus 57 ~~~~pDf~i~isPN~a~PGP~~ARE~l~~~---~iP~IvI~D~p~~K~~-d~l~~~g~GYIivk~D 118 (277)
T PRK00994 57 EEWKPDFVIVISPNPAAPGPKKAREILKAA---GIPCIVIGDAPGKKVK-DAMEEQGLGYIIVKAD 118 (277)
T ss_pred HhhCCCEEEEECCCCCCCCchHHHHHHHhc---CCCEEEEcCCCccchH-HHHHhcCCcEEEEecC
Confidence 467899888754444455555566655432 7799999887765544 6777666777665554
No 323
>PRK09016 quinolinate phosphoribosyltransferase; Validated
Probab=51.51 E-value=80 Score=27.38 Aligned_cols=55 Identities=15% Similarity=0.229 Sum_probs=42.6
Q ss_pred HHHHHHHhccCCCCCCcEEEEeCCCcHHHHHHHHHcCCceEEeCCCCHHHHHHHHHHHh
Q 026776 100 YELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVKLSDVKRIKDYLT 158 (233)
Q Consensus 100 ~~ll~~Lr~~~~~~~~piIvlt~~~~~~~~~~al~~Ga~dyL~KP~~~~eL~~~~~~l~ 158 (233)
.+.++.+|+..+ ..+|.+-.. +.+++.+++++|+|-.++--++++++.+++..+.
T Consensus 196 ~~av~~~r~~~~--~~kIeVEv~--sleea~ea~~~gaDiI~LDn~s~e~~~~av~~~~ 250 (296)
T PRK09016 196 RQAVEKAFWLHP--DVPVEVEVE--NLDELDQALKAGADIIMLDNFTTEQMREAVKRTN 250 (296)
T ss_pred HHHHHHHHHhCC--CCCEEEEeC--CHHHHHHHHHcCCCEEEeCCCChHHHHHHHHhhc
Confidence 466777776554 566665554 4788889999999999999999999998887653
No 324
>PRK09922 UDP-D-galactose:(glucosyl)lipopolysaccharide-1,6-D-galactosyltransferase; Provisional
Probab=51.50 E-value=1.6e+02 Score=25.47 Aligned_cols=67 Identities=9% Similarity=0.042 Sum_probs=42.8
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhccCCCCCCcEEEEeCCCcHHHHHHHHHcCCceEEeCCCCHHHHHHHHHHHhhhh
Q 026776 86 DLIITDYCMPGMTGYELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVKLSDVKRIKDYLTRDV 161 (233)
Q Consensus 86 DlvllD~~mp~~~g~~ll~~Lr~~~~~~~~piIvlt~~~~~~~~~~al~~Ga~dyL~KP~~~~eL~~~~~~l~~~~ 161 (233)
|+.++--. .+.-|..+++.+.. .+|+|..-..+. ..+.+..|..+++..|.+.+++...+..+....
T Consensus 259 d~~v~~s~-~Egf~~~~lEAma~-----G~Pvv~s~~~~g---~~eiv~~~~~G~lv~~~d~~~la~~i~~l~~~~ 325 (359)
T PRK09922 259 SALLLTSK-FEGFPMTLLEAMSY-----GIPCISSDCMSG---PRDIIKPGLNGELYTPGNIDEFVGKLNKVISGE 325 (359)
T ss_pred cEEEECCc-ccCcChHHHHHHHc-----CCCEEEeCCCCC---hHHHccCCCceEEECCCCHHHHHHHHHHHHhCc
Confidence 66665322 22346777777754 678875421232 224566788999999999999988777765443
No 325
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=51.50 E-value=1.3e+02 Score=24.30 Aligned_cols=82 Identities=11% Similarity=0.053 Sum_probs=48.1
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhcCC-EEEE-ECCHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCCCCCHHHHHHHHh
Q 026776 30 VHVLAVDDSFVDRKVIERLLTISSC-KVTA-VDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKKIK 107 (233)
Q Consensus 30 ~~ILIVddd~~~~~~l~~~L~~~g~-~v~~-a~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp~~~g~~ll~~Lr 107 (233)
.+|..||-++.....+++.++..+. .+.. ..+..+.+.. ....+|+|++|---...-.-++++.|.
T Consensus 77 ~~V~~vE~~~~a~~~a~~Nl~~~~~~~v~~~~~D~~~~l~~------------~~~~fDlV~~DPPy~~g~~~~~l~~l~ 144 (199)
T PRK10909 77 AGATLLEMDRAVAQQLIKNLATLKAGNARVVNTNALSFLAQ------------PGTPHNVVFVDPPFRKGLLEETINLLE 144 (199)
T ss_pred CEEEEEECCHHHHHHHHHHHHHhCCCcEEEEEchHHHHHhh------------cCCCceEEEECCCCCCChHHHHHHHHH
Confidence 5789999999999888888877764 2322 3343333321 123589999996422222345677776
Q ss_pred ccCCCCCCcEEEEeCC
Q 026776 108 DSSALREIPVVIMSSE 123 (233)
Q Consensus 108 ~~~~~~~~piIvlt~~ 123 (233)
.......-.+|++..+
T Consensus 145 ~~~~l~~~~iv~ve~~ 160 (199)
T PRK10909 145 DNGWLADEALIYVESE 160 (199)
T ss_pred HCCCcCCCcEEEEEec
Confidence 6432223345555433
No 326
>cd01836 FeeA_FeeB_like SGNH_hydrolase subfamily, FeeA, FeeB and similar esterases/lipases. FeeA and FeeB are part of a biosynthetic gene cluster and may participate in the biosynthesis of long-chain N-acyltyrosines by providing saturated and unsaturated fatty acids, which it turn are loaded onto the acyl carrier protein FeeL. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=51.37 E-value=1.1e+02 Score=23.61 Aligned_cols=41 Identities=12% Similarity=0.169 Sum_probs=25.5
Q ss_pred CCCcccEEEEcCCCCCC-----------CHHHHHHHHhccCCCCCCcEEEEeCC
Q 026776 81 DGLKVDLIITDYCMPGM-----------TGYELLKKIKDSSALREIPVVIMSSE 123 (233)
Q Consensus 81 ~~~~~DlvllD~~mp~~-----------~g~~ll~~Lr~~~~~~~~piIvlt~~ 123 (233)
...+||+|++-+...+. +-.++++.+++..+ ..+|++++..
T Consensus 64 ~~~~pd~Vii~~G~ND~~~~~~~~~~~~~l~~li~~i~~~~~--~~~iiv~~~p 115 (191)
T cd01836 64 PETRFDVAVISIGVNDVTHLTSIARWRKQLAELVDALRAKFP--GARVVVTAVP 115 (191)
T ss_pred ccCCCCEEEEEecccCcCCCCCHHHHHHHHHHHHHHHHhhCC--CCEEEEECCC
Confidence 45689999995544332 22346677776433 7788877643
No 327
>cd08185 Fe-ADH1 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenases-like (ADH). Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase fold and is a member of the iron-containing alcohol dehydrogenase-like family. They are distinct from other alcohol dehydrogenases which contain different protein domains. Proteins of this family have not been characterized. Their specific function is unknown. They are present in bacteria and archaea.
Probab=51.24 E-value=1.2e+02 Score=26.99 Aligned_cols=63 Identities=16% Similarity=0.153 Sum_probs=39.1
Q ss_pred cEEEEEeCCHH-----HHHHHHHHHhhcCCEEEEEC---------CHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCC
Q 026776 30 VHVLAVDDSFV-----DRKVIERLLTISSCKVTAVD---------SGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMP 95 (233)
Q Consensus 30 ~~ILIVddd~~-----~~~~l~~~L~~~g~~v~~a~---------~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp 95 (233)
-|+|||-|... ....+...|+..|.++..+. +..++.+.+ +...+|+||- +.
T Consensus 26 ~r~livt~~~~~~~~g~~~~v~~~L~~~~~~~~~~~~v~~~p~~~~v~~~~~~~-----------~~~~~D~Iia---vG 91 (380)
T cd08185 26 KKALIVTGNGSSKKTGYLDRVIELLKQAGVEVVVFDKVEPNPTTTTVMEGAALA-----------REEGCDFVVG---LG 91 (380)
T ss_pred CeEEEEeCCCchhhccHHHHHHHHHHHcCCeEEEeCCccCCCCHHHHHHHHHHH-----------HHcCCCEEEE---eC
Confidence 47888887543 33556777777787666553 233444444 4557899983 45
Q ss_pred CCCHHHHHHHH
Q 026776 96 GMTGYELLKKI 106 (233)
Q Consensus 96 ~~~g~~ll~~L 106 (233)
+.+-++..+.+
T Consensus 92 GGS~iD~aK~i 102 (380)
T cd08185 92 GGSSMDTAKAI 102 (380)
T ss_pred CccHHHHHHHH
Confidence 66666666655
No 328
>COG1091 RfbD dTDP-4-dehydrorhamnose reductase [Cell envelope biogenesis, outer membrane]
Probab=51.13 E-value=41 Score=28.91 Aligned_cols=55 Identities=15% Similarity=0.186 Sum_probs=39.0
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhcCCEEEEE-------CCHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCCC
Q 026776 30 VHVLAVDDSFVDRKVIERLLTISSCKVTAV-------DSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPG 96 (233)
Q Consensus 30 ~~ILIVddd~~~~~~l~~~L~~~g~~v~~a-------~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp~ 96 (233)
|+|||...+-.+...|.+.|. .+++|... .+.+...+.+ .+.+||+||--..+..
T Consensus 1 M~iLi~G~~GqLG~~L~~~l~-~~~~v~a~~~~~~Ditd~~~v~~~i-----------~~~~PDvVIn~AAyt~ 62 (281)
T COG1091 1 MKILITGANGQLGTELRRALP-GEFEVIATDRAELDITDPDAVLEVI-----------RETRPDVVINAAAYTA 62 (281)
T ss_pred CcEEEEcCCChHHHHHHHHhC-CCceEEeccCccccccChHHHHHHH-----------HhhCCCEEEECccccc
Confidence 459999999999999999987 55666643 2444455555 4568999996555544
No 329
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=50.97 E-value=1.5e+02 Score=26.65 Aligned_cols=77 Identities=13% Similarity=0.059 Sum_probs=48.6
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhcCCE-E-EEECCHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCCCCCHHHHHHH-H
Q 026776 30 VHVLAVDDSFVDRKVIERLLTISSCK-V-TAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKK-I 106 (233)
Q Consensus 30 ~~ILIVddd~~~~~~l~~~L~~~g~~-v-~~a~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp~~~g~~ll~~-L 106 (233)
.+|..+|-++...+.+++.++..+.. + ....+..+.+.. ...||+|++|- | ..+.+++.. |
T Consensus 82 ~~V~a~Din~~Av~~a~~N~~~N~~~~~~v~~~Da~~~l~~-------------~~~fD~V~lDP--~-Gs~~~~l~~al 145 (382)
T PRK04338 82 EKVTLNDINPDAVELIKKNLELNGLENEKVFNKDANALLHE-------------ERKFDVVDIDP--F-GSPAPFLDSAI 145 (382)
T ss_pred CEEEEEeCCHHHHHHHHHHHHHhCCCceEEEhhhHHHHHhh-------------cCCCCEEEECC--C-CCcHHHHHHHH
Confidence 36999999999999999888776653 2 233343333321 23599999995 3 445567666 5
Q ss_pred hccCCCCCCcEEEEeCCCc
Q 026776 107 KDSSALREIPVVIMSSENI 125 (233)
Q Consensus 107 r~~~~~~~~piIvlt~~~~ 125 (233)
+... .--+|.+|+.+.
T Consensus 146 ~~~~---~~gilyvSAtD~ 161 (382)
T PRK04338 146 RSVK---RGGLLCVTATDT 161 (382)
T ss_pred HHhc---CCCEEEEEecCc
Confidence 5432 345777775543
No 330
>PRK07896 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=50.92 E-value=87 Score=27.03 Aligned_cols=70 Identities=14% Similarity=0.265 Sum_probs=48.8
Q ss_pred ccEEEE-cCCCCCC-CHHHHHHHHhccCCCCCCcEEEEeCCCcHHHHHHHHHcCCceEEeCCCCHHHHHHHHHHHh
Q 026776 85 VDLIIT-DYCMPGM-TGYELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVKLSDVKRIKDYLT 158 (233)
Q Consensus 85 ~Dlvll-D~~mp~~-~g~~ll~~Lr~~~~~~~~piIvlt~~~~~~~~~~al~~Ga~dyL~KP~~~~eL~~~~~~l~ 158 (233)
.|.|++ |-++--. +-.+.++++|+..+ ..+|.+-. .+.+++.+++++|+|-.++--++++++.+++..+.
T Consensus 170 sd~ilIkdNHi~~~G~i~~ai~~~r~~~~--~~kIeVEv--~tl~ea~eal~~gaDiI~LDnm~~e~vk~av~~~~ 241 (289)
T PRK07896 170 GDAALIKDNHVAAAGSVVAALRAVRAAAP--DLPCEVEV--DSLEQLDEVLAEGAELVLLDNFPVWQTQEAVQRRD 241 (289)
T ss_pred cceeeecHHHHHHhCcHHHHHHHHHHhCC--CCCEEEEc--CCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHh
Confidence 455555 3222111 33567888887644 56666655 34568889999999999999999999998887553
No 331
>PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=50.91 E-value=1.4e+02 Score=24.42 Aligned_cols=34 Identities=3% Similarity=-0.080 Sum_probs=28.3
Q ss_pred CCCcEEEEEeCCHHHHHHHHHHHhhcCCEEEEEC
Q 026776 27 TEEVHVLAVDDSFVDRKVIERLLTISSCKVTAVD 60 (233)
Q Consensus 27 ~~~~~ILIVddd~~~~~~l~~~L~~~g~~v~~a~ 60 (233)
.+.-+|||..-...+...+.+.|.+.|+.|..+.
T Consensus 13 l~~k~vlItGas~gIG~~ia~~l~~~G~~v~~~~ 46 (258)
T PRK06935 13 LDGKVAIVTGGNTGLGQGYAVALAKAGADIIITT 46 (258)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEe
Confidence 4456899999999999999999999999887654
No 332
>cd04962 GT1_like_5 This family is most closely related to the GT1 family of glycosyltransferases. Glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have high structural homology despite minimal sequence homolog
Probab=50.84 E-value=1.6e+02 Score=25.15 Aligned_cols=64 Identities=19% Similarity=0.225 Sum_probs=41.2
Q ss_pred ccEEEEcCCCCCCCHHHHHHHHhccCCCCCCcEEEEeCCCcHHHHHHHHHcCCceEEeCCCCHHHHHHHHHHHh
Q 026776 85 VDLIITDYCMPGMTGYELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVKLSDVKRIKDYLT 158 (233)
Q Consensus 85 ~DlvllD~~mp~~~g~~ll~~Lr~~~~~~~~piIvlt~~~~~~~~~~al~~Ga~dyL~KP~~~~eL~~~~~~l~ 158 (233)
.|++++=.. .+.-|..+++.+.. .+|+|+. .... ..+.+..|..+|+.++.+.+++.+.+..+.
T Consensus 271 ~d~~v~ps~-~E~~~~~~~EAma~-----g~PvI~s-~~~~---~~e~i~~~~~G~~~~~~~~~~l~~~i~~l~ 334 (371)
T cd04962 271 ADLFLLPSE-KESFGLAALEAMAC-----GVPVVAS-NAGG---IPEVVKHGETGFLVDVGDVEAMAEYALSLL 334 (371)
T ss_pred cCEEEeCCC-cCCCccHHHHHHHc-----CCCEEEe-CCCC---chhhhcCCCceEEcCCCCHHHHHHHHHHHH
Confidence 466665432 33446667776653 6787764 3322 345667788999999999999877665553
No 333
>PF06925 MGDG_synth: Monogalactosyldiacylglycerol (MGDG) synthase; InterPro: IPR009695 This entry represents a conserved region of approximately 180 residues found towirds the N terminus of a number of plant and bacterial diacylglycerol glucosyltransferases, such as monogalactosyldiacylglycerol synthase [].; GO: 0016758 transferase activity, transferring hexosyl groups, 0009247 glycolipid biosynthetic process
Probab=50.69 E-value=36 Score=26.40 Aligned_cols=59 Identities=24% Similarity=0.429 Sum_probs=36.9
Q ss_pred CCCCcccEEEEcCCCCCCCHHHHHHHHhccCCCCCCcEE-EEeCCCc-HHHHHHHHHcCCceEEeCC
Q 026776 80 FDGLKVDLIITDYCMPGMTGYELLKKIKDSSALREIPVV-IMSSENI-LARIDRCLEDGAEDFIVKP 144 (233)
Q Consensus 80 ~~~~~~DlvllD~~mp~~~g~~ll~~Lr~~~~~~~~piI-vlt~~~~-~~~~~~al~~Ga~dyL~KP 144 (233)
+++.+||+||+=.-++..-. +..+|.......+|++ ++|.... . ..++.-|+|.|+.--
T Consensus 85 l~~~~PD~IIsThp~~~~~~---l~~lk~~~~~~~~p~~tvvTD~~~~H---~~W~~~~~D~y~Vas 145 (169)
T PF06925_consen 85 LREFQPDLIISTHPFPAQVP---LSRLKRRGRLPNIPVVTVVTDFDTVH---PFWIHPGVDRYFVAS 145 (169)
T ss_pred HhhcCCCEEEECCcchhhhH---HHHHHHhhcccCCcEEEEEcCCCCCC---cCeecCCCCEEEECC
Confidence 46789999999776653221 4445554443367765 6666532 2 246778899998754
No 334
>PRK13384 delta-aminolevulinic acid dehydratase; Provisional
Probab=50.35 E-value=68 Score=28.02 Aligned_cols=65 Identities=26% Similarity=0.398 Sum_probs=46.6
Q ss_pred CHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCCCCCHHHHHHHHhccCCCCCCcEEEEeCCCcHHHHHHHHHcCCce
Q 026776 61 SGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAED 139 (233)
Q Consensus 61 ~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp~~~g~~ll~~Lr~~~~~~~~piIvlt~~~~~~~~~~al~~Ga~d 139 (233)
|..||+.....+- .+..|+|++- |++--+++++.+++.. .+|+.++--++....+..|.+.|..|
T Consensus 227 n~~eAlre~~~D~--------~EGAD~lMVK---Pal~YLDIi~~~k~~~---~lPvaaYqVSGEYaMikaAa~~G~~d 291 (322)
T PRK13384 227 NGRQALLEALLDE--------AEGADILMVK---PGTPYLDVLSRLRQET---HLPLAAYQVGGEYAMIKFAALAGALD 291 (322)
T ss_pred CHHHHHHHHHhhH--------hhCCCEEEEc---CCchHHHHHHHHHhcc---CCCEEEEEchHHHHHHHHHHHcCCcc
Confidence 5566666654442 3357899886 7777888999999853 89999987777666677777777554
No 335
>KOG2335 consensus tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis]
Probab=50.29 E-value=1.9e+02 Score=25.82 Aligned_cols=104 Identities=14% Similarity=0.281 Sum_probs=64.9
Q ss_pred CcEEEEEeCCHHHHHHHHHHHhhcCC----EEEEECCHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCCCCC------
Q 026776 29 EVHVLAVDDSFVDRKVIERLLTISSC----KVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMT------ 98 (233)
Q Consensus 29 ~~~ILIVddd~~~~~~l~~~L~~~g~----~v~~a~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp~~~------ 98 (233)
..-..+.++-+.+.+.+..+=...+. .+..+.+.++-++.+... .....+++.+--.-....
T Consensus 117 ~yGa~L~~~~eLv~e~V~~v~~~l~~pVs~KIRI~~d~~kTvd~ak~~--------e~aG~~~ltVHGRtr~~kg~~~~p 188 (358)
T KOG2335|consen 117 GYGAFLMDNPELVGEMVSAVRANLNVPVSVKIRIFVDLEKTVDYAKML--------EDAGVSLLTVHGRTREQKGLKTGP 188 (358)
T ss_pred CccceeccCHHHHHHHHHHHHhhcCCCeEEEEEecCcHHHHHHHHHHH--------HhCCCcEEEEecccHHhcCCCCCC
Confidence 34567777777777777666555553 334467777777666432 222345555544333333
Q ss_pred -HHHHHHHHhccCCCCCCcEEEEeCCCcHHHHHHHHH-cCCceEEe
Q 026776 99 -GYELLKKIKDSSALREIPVVIMSSENILARIDRCLE-DGAEDFIV 142 (233)
Q Consensus 99 -g~~ll~~Lr~~~~~~~~piIvlt~~~~~~~~~~al~-~Ga~dyL~ 142 (233)
.++.++.+++..+ .+|+|+=.+-....++.++++ .|+++++.
T Consensus 189 ad~~~i~~v~~~~~--~ipviaNGnI~~~~d~~~~~~~tG~dGVM~ 232 (358)
T KOG2335|consen 189 ADWEAIKAVRENVP--DIPVIANGNILSLEDVERCLKYTGADGVMS 232 (358)
T ss_pred cCHHHHHHHHHhCc--CCcEEeeCCcCcHHHHHHHHHHhCCceEEe
Confidence 3788999998654 566665444445668888888 89988754
No 336
>TIGR00089 RNA modification enzyme, MiaB family. This subfamily is aparrently a part of a larger superfamily of enzymes utilizing both a 4Fe4S cluster and S-adenosyl methionine (SAM) to initiate radical reactions. MiaB acts on a particular isoprenylated Adenine base of certain tRNAs causing thiolation at an aromatic carbon, and probably also transferring a methyl grouyp from SAM to the thiol. The particular substrate of the three other clades is unknown but may be very closely related.
Probab=50.00 E-value=1e+02 Score=27.88 Aligned_cols=95 Identities=12% Similarity=0.095 Sum_probs=52.7
Q ss_pred CHHHHHHHHHHHhhcCCEEEEECCHHHHHHHhhhhhhhhccCCCCCcccEEEEcC---CCC-CCCHHHHHHHHhccCCCC
Q 026776 38 SFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDY---CMP-GMTGYELLKKIKDSSALR 113 (233)
Q Consensus 38 d~~~~~~l~~~L~~~g~~v~~a~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~---~mp-~~~g~~ll~~Lr~~~~~~ 113 (233)
|....+.|...|...||+++.. ...+|+|++.. ... ....++.++++++...
T Consensus 12 N~~ds~~~~~~l~~~g~~~~~~----------------------~~~aD~v~intC~v~~~a~~~~~~~i~~~~~~~~-- 67 (429)
T TIGR00089 12 NEADSEIMAGLLKEAGYEVTDD----------------------PEEADVIIINTCAVREKAEQKVRSRLGELAKLKK-- 67 (429)
T ss_pred cHHHHHHHHHHHHHCcCEECCC----------------------cccCCEEEEecceeechHHHHHHHHHHHHHHhCc--
Confidence 4556677888888888865521 12479999862 211 2345777788776543
Q ss_pred CCcEEEEeCCCcHHHHHHHH-Hc-CCceEEeCCCCHHHHHHHHHHH
Q 026776 114 EIPVVIMSSENILARIDRCL-ED-GAEDFIVKPVKLSDVKRIKDYL 157 (233)
Q Consensus 114 ~~piIvlt~~~~~~~~~~al-~~-Ga~dyL~KP~~~~eL~~~~~~l 157 (233)
..+.|++++........+++ +. ++| ++.-.-....+..++..+
T Consensus 68 ~~~~vvvgGc~a~~~~ee~~~~~~~vd-~vvg~~~~~~~~~~l~~~ 112 (429)
T TIGR00089 68 KNAKIVVAGCLAQREGEELLKRIPEVD-IVLGPQNKERIPEAIESA 112 (429)
T ss_pred CCCEEEEECcccccCHHHHHhhCCCCC-EEECCCCHHHHHHHHHHH
Confidence 22245565554333333333 33 555 455555555555554443
No 337
>cd08187 BDH Butanol dehydrogenase catalyzes the conversion of butyraldehyde to butanol with the cofactor NAD(P)H being oxidized in the process. The butanol dehydrogenase (BDH) is involved in the final step of the butanol formation pathway in anaerobic micro-organism. Butanol dehydrogenase catalyzes the conversion of butyraldehyde to butanol with the cofactor NAD(P)H being oxidized in the process. Activity in the reverse direction was 50-fold lower than that in the forward direction. The NADH-BDH had higher activity with longer chained aldehydes and was inhibited by metabolites containing an adenine moiety. This protein family belongs to the so-called iron-containing alcohol dehydrogenase superfamily. Since members of this superfamily use different divalent ions, preferentially iron or zinc, it has been suggested to be renamed to family III metal-dependent polyol dehydrogenases.
Probab=49.85 E-value=1.3e+02 Score=26.75 Aligned_cols=63 Identities=21% Similarity=0.172 Sum_probs=39.1
Q ss_pred cEEEEEeCCHHH-----HHHHHHHHhhcCCEEEEEC---------CHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCC
Q 026776 30 VHVLAVDDSFVD-----RKVIERLLTISSCKVTAVD---------SGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMP 95 (233)
Q Consensus 30 ~~ILIVddd~~~-----~~~l~~~L~~~g~~v~~a~---------~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp 95 (233)
-|+|||-|.... ...+.+.|+..|+++..++ +..++++.+ +...+|+||- +.
T Consensus 29 ~r~livt~~~~~~~~~~~~~v~~~L~~~g~~~~~~~~v~~~p~~~~v~~~~~~~-----------~~~~~D~IIa---iG 94 (382)
T cd08187 29 KKVLLVYGGGSIKKNGLYDRVIASLKEAGIEVVELGGVEPNPRLETVREGIELC-----------KEEKVDFILA---VG 94 (382)
T ss_pred CEEEEEeCCcHHHhcCcHHHHHHHHHHcCCeEEEECCccCCCCHHHHHHHHHHH-----------HHcCCCEEEE---eC
Confidence 478888765332 3567778888888776654 223344444 4557899873 45
Q ss_pred CCCHHHHHHHH
Q 026776 96 GMTGYELLKKI 106 (233)
Q Consensus 96 ~~~g~~ll~~L 106 (233)
+.+-+++.+.+
T Consensus 95 GGS~iD~aK~i 105 (382)
T cd08187 95 GGSVIDSAKAI 105 (382)
T ss_pred ChHHHHHHHHH
Confidence 66666666654
No 338
>PRK04452 acetyl-CoA decarbonylase/synthase complex subunit delta; Provisional
Probab=49.80 E-value=1.8e+02 Score=25.51 Aligned_cols=17 Identities=6% Similarity=-0.039 Sum_probs=10.4
Q ss_pred CCCCCCCcEEEEEeCCH
Q 026776 23 SPSDTEEVHVLAVDDSF 39 (233)
Q Consensus 23 ~~~~~~~~~ILIVddd~ 39 (233)
...+...+-+-|.|+-+
T Consensus 43 ~~~n~p~ia~~v~D~~~ 59 (319)
T PRK04452 43 PMPNPPVIAMEVFDMPP 59 (319)
T ss_pred CCCCCCeEEEEEecCCC
Confidence 33344567777887754
No 339
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=49.74 E-value=2e+02 Score=26.00 Aligned_cols=92 Identities=18% Similarity=0.212 Sum_probs=43.7
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhcC-CEEEEECCHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCCCCCHHHHHHHHhc
Q 026776 30 VHVLAVDDSFVDRKVIERLLTISS-CKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKKIKD 108 (233)
Q Consensus 30 ~~ILIVddd~~~~~~l~~~L~~~g-~~v~~a~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp~~~g~~ll~~Lr~ 108 (233)
++|||+.--. +...+...|.+.+ ++|+.++-..+..+.+.... ......+.+|.. +.-.+.+.|++
T Consensus 2 ~~ilviGaG~-Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~--------~~~v~~~~vD~~----d~~al~~li~~ 68 (389)
T COG1748 2 MKILVIGAGG-VGSVVAHKLAQNGDGEVTIADRSKEKCARIAELI--------GGKVEALQVDAA----DVDALVALIKD 68 (389)
T ss_pred CcEEEECCch-hHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhc--------cccceeEEeccc----ChHHHHHHHhc
Confidence 4677777633 4444444544444 77777765544444442110 113455555542 22233344443
Q ss_pred cCCCCCCcEEEEeCCCcHHHHHHHHHcCCc
Q 026776 109 SSALREIPVVIMSSENILARIDRCLEDGAE 138 (233)
Q Consensus 109 ~~~~~~~piIvlt~~~~~~~~~~al~~Ga~ 138 (233)
. ++.|-++-.+........|++.|++
T Consensus 69 ~----d~VIn~~p~~~~~~i~ka~i~~gv~ 94 (389)
T COG1748 69 F----DLVINAAPPFVDLTILKACIKTGVD 94 (389)
T ss_pred C----CEEEEeCCchhhHHHHHHHHHhCCC
Confidence 2 3333333344445555566666654
No 340
>PF09456 RcsC: RcsC Alpha-Beta-Loop (ABL); InterPro: IPR019017 This domain is found in the C terminus of the signal transduction response regulator (phospho-relay) kinase RcsC, between the ATP-binding region (IPR003594 from INTERPRO) and the receiver region (IPR001789 from INTERPRO). This domain forms a discrete alpha/beta/loop structure []. The Rcs signalling pathway controls a variety of physiological functions like capsule synthesis, cell division or motility in prokaryotes. The Rcs regulation cascade, involving a multi-step phosphorelay between the two membrane-bound hybrid sensor kinases RcsC and RcsD and the global regulator RcsB, is, up to now, one of the most complicated regulatory systems in bacteria []. ; GO: 0004673 protein histidine kinase activity, 0004871 signal transducer activity, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay), 0006355 regulation of transcription, DNA-dependent, 0018106 peptidyl-histidine phosphorylation, 0005886 plasma membrane, 0016021 integral to membrane; PDB: 2AYY_A 2AYX_A.
Probab=49.65 E-value=64 Score=22.80 Aligned_cols=89 Identities=16% Similarity=0.107 Sum_probs=50.3
Q ss_pred EEEeCCHHHHHHHHHHHhhcCCEEEEECCHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCCCCCHHHHHHHHhccCCC
Q 026776 33 LAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKKIKDSSAL 112 (233)
Q Consensus 33 LIVddd~~~~~~l~~~L~~~g~~v~~a~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp~~~g~~ll~~Lr~~~~~ 112 (233)
.+.-.|......|.++|+..|+.|...... + ...-|++|.|.......
T Consensus 3 wL~irNa~Le~yL~~lL~~~G~~v~~y~~q-~-----------------~~~~DvlItD~~~~~~~-------------- 50 (92)
T PF09456_consen 3 WLAIRNAYLESYLQRLLSYHGFQVQRYEGQ-Q-----------------PDADDVLITDYEPQVAW-------------- 50 (92)
T ss_dssp EEE---HHHHHHHHHHHCTTTEEEEE-SS----------------------TT-EEEEESS-S-----------------
T ss_pred EEEehhHHHHHHHHHHHHHCCcEEEEecCC-C-----------------CCCCcEEEECCCcccCC--------------
Confidence 344466777888899999999999887631 1 12469999997543211
Q ss_pred CCCcEEEEeCCCcHHHHHHHHHcCCceEEeCCCCHHHHHHHHHHH
Q 026776 113 REIPVVIMSSENILARIDRCLEDGAEDFIVKPVKLSDVKRIKDYL 157 (233)
Q Consensus 113 ~~~piIvlt~~~~~~~~~~al~~Ga~dyL~KP~~~~eL~~~~~~l 157 (233)
+.-..|.++..... .+.+......+.-...+.||..++.++
T Consensus 51 ~~~a~I~~s~~hiG----~p~E~~pg~Wl~sTat~~eL~~LL~rI 91 (92)
T PF09456_consen 51 PGRAVIRFSRRHIG----PPQERRPGYWLHSTATPHELPALLDRI 91 (92)
T ss_dssp -SSEEEEEESS-SS----S--TTSTTEEEEESS-TTHHHHHHHHH
T ss_pred cceEEEEEchHhCC----CccccCCCcEEeccCCHHHHHHHHHHh
Confidence 12335666654321 233455677788888888887777654
No 341
>cd01572 QPRTase Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=49.63 E-value=1.6e+02 Score=24.96 Aligned_cols=92 Identities=16% Similarity=0.123 Sum_probs=55.2
Q ss_pred EEEEEeCCHHHHHHHHHHH----hhcC---CEEEEECCHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCCCCCHHHHH
Q 026776 31 HVLAVDDSFVDRKVIERLL----TISS---CKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELL 103 (233)
Q Consensus 31 ~ILIVddd~~~~~~l~~~L----~~~g---~~v~~a~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp~~~g~~ll 103 (233)
.|||.|++-.+.-.+...+ +..+ .-...+.+.+++.+.+ ...+|.|.+|-. +.+.+
T Consensus 154 ~vlikdnHi~~~g~i~~~v~~~r~~~~~~~~Igvev~s~eea~~A~------------~~gaDyI~ld~~-----~~e~l 216 (268)
T cd01572 154 AVLIKDNHIAAAGSITEAVRRARAAAPFTLKIEVEVETLEQLKEAL------------EAGADIIMLDNM-----SPEEL 216 (268)
T ss_pred eeeeehHHHHHhCCHHHHHHHHHHhCCCCCeEEEEECCHHHHHHHH------------HcCCCEEEECCc-----CHHHH
Confidence 4778877754443222222 2223 2335578888888876 235899999843 24556
Q ss_pred HHHhccCCCCCCcEEEEeCCCcHHHHHHHHHcCCceEE
Q 026776 104 KKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFI 141 (233)
Q Consensus 104 ~~Lr~~~~~~~~piIvlt~~~~~~~~~~al~~Ga~dyL 141 (233)
+++.+... .++|+++. +.-+.+.+.+..+.|+|.+-
T Consensus 217 ~~~~~~~~-~~ipi~Ai-GGI~~~ni~~~a~~Gvd~Ia 252 (268)
T cd01572 217 REAVALLK-GRVLLEAS-GGITLENIRAYAETGVDYIS 252 (268)
T ss_pred HHHHHHcC-CCCcEEEE-CCCCHHHHHHHHHcCCCEEE
Confidence 66554321 14665544 44567778888899998764
No 342
>PRK08649 inosine 5-monophosphate dehydrogenase; Validated
Probab=49.44 E-value=1.9e+02 Score=25.80 Aligned_cols=56 Identities=18% Similarity=0.230 Sum_probs=37.8
Q ss_pred CCcccEEEEcCCC-------CCCCHHHHHHHHhccCCCCCCcEEEEeCCCcHHHHHHHHHcCCceEEe
Q 026776 82 GLKVDLIITDYCM-------PGMTGYELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIV 142 (233)
Q Consensus 82 ~~~~DlvllD~~m-------p~~~g~~ll~~Lr~~~~~~~~piIvlt~~~~~~~~~~al~~Ga~dyL~ 142 (233)
....|+|.++... +..+-..+.+.+++. .+|||+ ..-.+.+.+.+++++|||.++.
T Consensus 152 eaGvd~I~vhgrt~~~~h~~~~~~~~~i~~~ik~~----~ipVIa-G~V~t~e~A~~l~~aGAD~V~V 214 (368)
T PRK08649 152 EAGVDLFVIQGTVVSAEHVSKEGEPLNLKEFIYEL----DVPVIV-GGCVTYTTALHLMRTGAAGVLV 214 (368)
T ss_pred HCCCCEEEEeccchhhhccCCcCCHHHHHHHHHHC----CCCEEE-eCCCCHHHHHHHHHcCCCEEEE
Confidence 4468999996532 222556666666652 678876 3445667788899999999855
No 343
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=49.40 E-value=2e+02 Score=25.82 Aligned_cols=78 Identities=17% Similarity=0.181 Sum_probs=46.2
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhcCCE-EEE-ECCHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCCCCCHHHHHHHHh
Q 026776 30 VHVLAVDDSFVDRKVIERLLTISSCK-VTA-VDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKKIK 107 (233)
Q Consensus 30 ~~ILIVddd~~~~~~l~~~L~~~g~~-v~~-a~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp~~~g~~ll~~Lr 107 (233)
-+|..+|-++...+.+++.++..+.. +.. ..+....+... ...||+|++|- ++. ...++..+-
T Consensus 70 ~~Vv~nD~n~~Av~~i~~N~~~N~~~~~~v~~~Da~~~l~~~------------~~~fDvIdlDP--fGs-~~~fld~al 134 (374)
T TIGR00308 70 REVFANDINPKAVESIKNNVEYNSVENIEVPNEDAANVLRYR------------NRKFHVIDIDP--FGT-PAPFVDSAI 134 (374)
T ss_pred CEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEchhHHHHHHHh------------CCCCCEEEeCC--CCC-cHHHHHHHH
Confidence 46899999999999999988776642 322 23333333321 24699999996 332 234544443
Q ss_pred ccCCCCCCcEEEEeCCC
Q 026776 108 DSSALREIPVVIMSSEN 124 (233)
Q Consensus 108 ~~~~~~~~piIvlt~~~ 124 (233)
+.-. .-.++.+|+.+
T Consensus 135 ~~~~--~~glL~vTaTD 149 (374)
T TIGR00308 135 QASA--ERGLLLVTATD 149 (374)
T ss_pred Hhcc--cCCEEEEEecc
Confidence 2211 33567777544
No 344
>cd06358 PBP1_NHase Type I periplasmic-binding protein of the nitrile hydratase (NHase) system that selectively converts nitriles to corresponding amides. This group includes the type I periplasmic-binding protein of the nitrile hydratase (NHase) system that selectively converts nitriles to corresponding amides, which are subsequently converted by amidases to yield free carboxylic acids and ammonia. NHases from bacteria and fungi have been purified and characterized. In Rhodococcus sp., the nitrile hydratase operon consists of six genes encoding NHase regulator 2, NHase regulator 1, amidase, NHase alpha subunit, NHase beta subunit, and NHase activator. The operon produces a constitutive hydratase that has a broad substrate spectrum: aliphatic and aromatic nitriles, mononitriles and dinitriles, hydroxynitriles and amino-nitriles, and a constitutive amidase of equally low substrate specificity. NHases are metalloenzymes containing either cobalt or iron, and therefore can be classified int
Probab=49.29 E-value=1.6e+02 Score=25.18 Aligned_cols=77 Identities=9% Similarity=0.124 Sum_probs=45.0
Q ss_pred EEEEEeCC-H---HHHHHHHHHHhhcCCEEEE---EC----CHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCCCCCH
Q 026776 31 HVLAVDDS-F---VDRKVIERLLTISSCKVTA---VD----SGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTG 99 (233)
Q Consensus 31 ~ILIVddd-~---~~~~~l~~~L~~~g~~v~~---a~----~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp~~~g 99 (233)
+|.++-++ . .....++..++..|.++.. +. +....+..+ ....||+|++... ..+.
T Consensus 134 ~v~i~~~~~~~g~~~~~~~~~~~~~~G~~v~~~~~~~~~~~d~~~~v~~l-----------~~~~pd~v~~~~~--~~~~ 200 (333)
T cd06358 134 RWYLIGNDYVWPRGSLAAAKRYIAELGGEVVGEEYVPLGTTDFTSVLERI-----------AASGADAVLSTLV--GQDA 200 (333)
T ss_pred eEEEEeccchhhHHHHHHHHHHHHHcCCEEeeeeeecCChHHHHHHHHHH-----------HHcCCCEEEEeCC--CCch
Confidence 45555433 2 2345566677778887653 22 333344444 3457899998653 3456
Q ss_pred HHHHHHHhccCCCCCCcEEEEeC
Q 026776 100 YELLKKIKDSSALREIPVVIMSS 122 (233)
Q Consensus 100 ~~ll~~Lr~~~~~~~~piIvlt~ 122 (233)
..+++.+++... ..+++..+.
T Consensus 201 ~~~~~~~~~~G~--~~~~~~~~~ 221 (333)
T cd06358 201 VAFNRQFAAAGL--RDRILRLSP 221 (333)
T ss_pred HHHHHHHHHcCC--CccCceeec
Confidence 788999987654 445554443
No 345
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated
Probab=49.13 E-value=2.1e+02 Score=26.03 Aligned_cols=30 Identities=10% Similarity=0.273 Sum_probs=25.8
Q ss_pred CCcEEEEeCCCcHHHHHHHHHcCCceEEeC
Q 026776 114 EIPVVIMSSENILARIDRCLEDGAEDFIVK 143 (233)
Q Consensus 114 ~~piIvlt~~~~~~~~~~al~~Ga~dyL~K 143 (233)
.+|||+=..-....++.+|+.+||+.++.=
T Consensus 256 ~vpVIAdGGI~~~~Di~KALalGA~aVmvG 285 (404)
T PRK06843 256 NICIIADGGIRFSGDVVKAIAAGADSVMIG 285 (404)
T ss_pred CCeEEEeCCCCCHHHHHHHHHcCCCEEEEc
Confidence 689888777788999999999999998654
No 346
>PRK15427 colanic acid biosynthesis glycosyltransferase WcaL; Provisional
Probab=49.08 E-value=2e+02 Score=25.74 Aligned_cols=66 Identities=15% Similarity=0.204 Sum_probs=41.6
Q ss_pred ccEEEEcCCCC---CCC--HHHHHHHHhccCCCCCCcEEEEeCCCcHHHHHHHHHcCCceEEeCCCCHHHHHHHHHHHhh
Q 026776 85 VDLIITDYCMP---GMT--GYELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVKLSDVKRIKDYLTR 159 (233)
Q Consensus 85 ~DlvllD~~mp---~~~--g~~ll~~Lr~~~~~~~~piIvlt~~~~~~~~~~al~~Ga~dyL~KP~~~~eL~~~~~~l~~ 159 (233)
.|+.++=.... +.+ |..+++.+.. .+|+|.-...+ ..+.+..|..+++..|-+.+++...+..+..
T Consensus 299 aDv~v~pS~~~~~g~~Eg~p~~llEAma~-----G~PVI~t~~~g----~~E~v~~~~~G~lv~~~d~~~la~ai~~l~~ 369 (406)
T PRK15427 299 ADVFLLPSVTGADGDMEGIPVALMEAMAV-----GIPVVSTLHSG----IPELVEADKSGWLVPENDAQALAQRLAAFSQ 369 (406)
T ss_pred CCEEEECCccCCCCCccCccHHHHHHHhC-----CCCEEEeCCCC----chhhhcCCCceEEeCCCCHHHHHHHHHHHHh
Confidence 47777632211 123 4556666643 67887543222 3456778899999999999999877766654
No 347
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=48.97 E-value=1e+02 Score=25.41 Aligned_cols=57 Identities=16% Similarity=0.084 Sum_probs=40.1
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhcCC--EEE-EECCHHHHHHHhhhhhhhhccCCCCCcccEEEEcCC
Q 026776 30 VHVLAVDDSFVDRKVIERLLTISSC--KVT-AVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYC 93 (233)
Q Consensus 30 ~~ILIVddd~~~~~~l~~~L~~~g~--~v~-~a~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~ 93 (233)
-+|.-+|-++......++.++..|+ .+. ...+..+.+..+.... ....||+|++|..
T Consensus 94 g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~L~~l~~~~-------~~~~fD~VfiDa~ 153 (234)
T PLN02781 94 GRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSALDQLLNND-------PKPEFDFAFVDAD 153 (234)
T ss_pred CEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHhCC-------CCCCCCEEEECCC
Confidence 4799999999999999999988875 233 3456666665542110 1247999999975
No 348
>PRK09522 bifunctional glutamine amidotransferase/anthranilate phosphoribosyltransferase; Provisional
Probab=48.79 E-value=28 Score=32.71 Aligned_cols=32 Identities=13% Similarity=0.050 Sum_probs=27.1
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhcCCEEEEECC
Q 026776 30 VHVLAVDDSFVDRKVIERLLTISSCKVTAVDS 61 (233)
Q Consensus 30 ~~ILIVddd~~~~~~l~~~L~~~g~~v~~a~~ 61 (233)
.+|||||....+-..+.++|+..|+.+..+.+
T Consensus 2 ~~iLiIDn~dsft~nl~~~lr~~g~~v~V~~~ 33 (531)
T PRK09522 2 ADILLLDNIDSFTYNLADQLRSNGHNVVIYRN 33 (531)
T ss_pred CeEEEEeCCChHHHHHHHHHHHCCCCEEEEEC
Confidence 47999999988899999999999987776654
No 349
>PRK00536 speE spermidine synthase; Provisional
Probab=48.39 E-value=1.5e+02 Score=25.19 Aligned_cols=21 Identities=38% Similarity=0.336 Sum_probs=12.7
Q ss_pred CcccEEEEcCCCCCCCHHHHHH
Q 026776 83 LKVDLIITDYCMPGMTGYELLK 104 (233)
Q Consensus 83 ~~~DlvllD~~mp~~~g~~ll~ 104 (233)
..||+||+|.. +..+-++.++
T Consensus 138 ~~fDVIIvDs~-~~~~fy~~~~ 158 (262)
T PRK00536 138 KKYDLIICLQE-PDIHKIDGLK 158 (262)
T ss_pred CcCCEEEEcCC-CChHHHHHHH
Confidence 46999999953 4444443333
No 350
>PRK09860 putative alcohol dehydrogenase; Provisional
Probab=48.22 E-value=1.4e+02 Score=26.64 Aligned_cols=64 Identities=19% Similarity=0.205 Sum_probs=40.2
Q ss_pred cEEEEEeCCHH----HHHHHHHHHhhcCCEEEEEC---------CHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCCC
Q 026776 30 VHVLAVDDSFV----DRKVIERLLTISSCKVTAVD---------SGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPG 96 (233)
Q Consensus 30 ~~ILIVddd~~----~~~~l~~~L~~~g~~v~~a~---------~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp~ 96 (233)
-++|||-|... ....+...|+..|..+..++ +..++.+.+ +...+|+||- +.|
T Consensus 32 ~~~livt~~~~~~~g~~~~v~~~L~~~~i~~~~f~~v~~np~~~~v~~~~~~~-----------~~~~~D~Iia---iGG 97 (383)
T PRK09860 32 TRTLIVTDNMLTKLGMAGDVQKALEERNIFSVIYDGTQPNPTTENVAAGLKLL-----------KENNCDSVIS---LGG 97 (383)
T ss_pred CEEEEEcCcchhhCccHHHHHHHHHHcCCeEEEeCCCCCCcCHHHHHHHHHHH-----------HHcCCCEEEE---eCC
Confidence 47899977633 34467777887787665553 223444444 4567899883 457
Q ss_pred CCHHHHHHHHh
Q 026776 97 MTGYELLKKIK 107 (233)
Q Consensus 97 ~~g~~ll~~Lr 107 (233)
.+-++..+.+.
T Consensus 98 GS~iD~AK~ia 108 (383)
T PRK09860 98 GSPHDCAKGIA 108 (383)
T ss_pred chHHHHHHHHH
Confidence 67777766654
No 351
>TIGR00078 nadC nicotinate-nucleotide pyrophosphorylase. Synonym: quinolinate phosphoribosyltransferase (decarboxylating)
Probab=48.08 E-value=1e+02 Score=26.20 Aligned_cols=93 Identities=19% Similarity=0.174 Sum_probs=54.7
Q ss_pred EEEEEeCCHHHHHHHH----HHHhhcC---CEEEEECCHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCCCCCHHHHH
Q 026776 31 HVLAVDDSFVDRKVIE----RLLTISS---CKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELL 103 (233)
Q Consensus 31 ~ILIVddd~~~~~~l~----~~L~~~g---~~v~~a~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp~~~g~~ll 103 (233)
.+||.|++-...-.+. ..-+..+ .-...+.+.+++.+.. ...+|.|.+|-.-| +-+
T Consensus 150 ~ilikdnHi~~~G~~~~av~~~r~~~~~~~~Igvev~t~eea~~A~------------~~gaDyI~ld~~~~-----e~l 212 (265)
T TIGR00078 150 AVMIKDNHIAAAGSIEKAVKRARAAAPFALKIEVEVESLEEAEEAA------------EAGADIIMLDNMKP-----EEI 212 (265)
T ss_pred ceeeeccHHHHhCCHHHHHHHHHHhCCCCCeEEEEeCCHHHHHHHH------------HcCCCEEEECCCCH-----HHH
Confidence 4778887754433222 2222233 2335578999988876 23579999985333 334
Q ss_pred HHHhccCCCCCCcEEEEeCCCcHHHHHHHHHcCCceEEe
Q 026776 104 KKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIV 142 (233)
Q Consensus 104 ~~Lr~~~~~~~~piIvlt~~~~~~~~~~al~~Ga~dyL~ 142 (233)
+++.+.-. ..+|+++ ++.-+.+.+.+..+.|+|.+-.
T Consensus 213 k~~v~~~~-~~ipi~A-sGGI~~~ni~~~a~~Gvd~Isv 249 (265)
T TIGR00078 213 KEAVQLLK-GRVLLEA-SGGITLDNLEEYAETGVDVISS 249 (265)
T ss_pred HHHHHHhc-CCCcEEE-ECCCCHHHHHHHHHcCCCEEEe
Confidence 44332211 1356554 4555677888889999987754
No 352
>COG3010 NanE Putative N-acetylmannosamine-6-phosphate epimerase [Carbohydrate transport and metabolism]
Probab=48.06 E-value=90 Score=25.69 Aligned_cols=70 Identities=21% Similarity=0.287 Sum_probs=50.2
Q ss_pred ECCHHHHHHHhhhhhhhhccCCCCCcccEEEEcC-------CCCCCCHHHHHHHHhccCCCCCCcEEEEeCCCcHHHHHH
Q 026776 59 VDSGRRALQFLGLDEEQSINGFDGLKVDLIITDY-------CMPGMTGYELLKKIKDSSALREIPVVIMSSENILARIDR 131 (233)
Q Consensus 59 a~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~-------~mp~~~g~~ll~~Lr~~~~~~~~piIvlt~~~~~~~~~~ 131 (233)
+++.+|++.... ..+|+|=.-+ .-|....+++++.+.+. ..++|.=......+.+.+
T Consensus 134 ~St~ee~l~a~~------------~G~D~IGTTLsGYT~~~~~~~~pDf~lvk~l~~~----~~~vIAEGr~~tP~~Ak~ 197 (229)
T COG3010 134 CSTFEEGLNAHK------------LGFDIIGTTLSGYTGYTEKPTEPDFQLVKQLSDA----GCRVIAEGRYNTPEQAKK 197 (229)
T ss_pred cCCHHHHHHHHH------------cCCcEEecccccccCCCCCCCCCcHHHHHHHHhC----CCeEEeeCCCCCHHHHHH
Confidence 567777777652 2456553211 12334568899999873 778988888889999999
Q ss_pred HHHcCCceEEeCC
Q 026776 132 CLEDGAEDFIVKP 144 (233)
Q Consensus 132 al~~Ga~dyL~KP 144 (233)
+++.|++.++.-.
T Consensus 198 a~~~Ga~aVvVGs 210 (229)
T COG3010 198 AIEIGADAVVVGS 210 (229)
T ss_pred HHHhCCeEEEECc
Confidence 9999999997654
No 353
>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
Probab=47.95 E-value=1.8e+02 Score=24.84 Aligned_cols=85 Identities=19% Similarity=0.215 Sum_probs=53.0
Q ss_pred CCCcEEEEEeCCHHHHHHHHHHHhhcCCEEEEECCHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCCCCCHHH-HHHH
Q 026776 27 TEEVHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYE-LLKK 105 (233)
Q Consensus 27 ~~~~~ILIVddd~~~~~~l~~~L~~~g~~v~~a~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp~~~g~~-ll~~ 105 (233)
+..-++||-.-..-....+.+.|.+.||.+..+.--++-|..+...-+. -.....+++-+|+. +.+.++ +..+
T Consensus 4 ~~~~~~lITGASsGIG~~~A~~lA~~g~~liLvaR~~~kL~~la~~l~~----~~~v~v~vi~~DLs--~~~~~~~l~~~ 77 (265)
T COG0300 4 MKGKTALITGASSGIGAELAKQLARRGYNLILVARREDKLEALAKELED----KTGVEVEVIPADLS--DPEALERLEDE 77 (265)
T ss_pred CCCcEEEEECCCchHHHHHHHHHHHCCCEEEEEeCcHHHHHHHHHHHHH----hhCceEEEEECcCC--ChhHHHHHHHH
Confidence 4567899999999999999999999999988876666655555432111 01223455656654 444443 4446
Q ss_pred HhccCCCCCCcEEE
Q 026776 106 IKDSSALREIPVVI 119 (233)
Q Consensus 106 Lr~~~~~~~~piIv 119 (233)
|++... .+-+++
T Consensus 78 l~~~~~--~IdvLV 89 (265)
T COG0300 78 LKERGG--PIDVLV 89 (265)
T ss_pred HHhcCC--cccEEE
Confidence 666432 444443
No 354
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=47.85 E-value=36 Score=31.09 Aligned_cols=76 Identities=13% Similarity=0.131 Sum_probs=35.0
Q ss_pred CcEEEEEeCC---HHHHHHHHHHHhhcCCEEEEECCHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCCCCCHHHHHHH
Q 026776 29 EVHVLAVDDS---FVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKK 105 (233)
Q Consensus 29 ~~~ILIVddd---~~~~~~l~~~L~~~g~~v~~a~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp~~~g~~ll~~ 105 (233)
+.++++|--| +...+.|+.+-++.+..++...++.+..+... +++..+....+|+||+|..=-..-.-++..+
T Consensus 128 ~~kvllVaaD~~RpAA~eQL~~La~q~~v~~f~~~~~~~Pv~Iak----~al~~ak~~~~DvvIvDTAGRl~ide~Lm~E 203 (451)
T COG0541 128 GKKVLLVAADTYRPAAIEQLKQLAEQVGVPFFGSGTEKDPVEIAK----AALEKAKEEGYDVVIVDTAGRLHIDEELMDE 203 (451)
T ss_pred CCceEEEecccCChHHHHHHHHHHHHcCCceecCCCCCCHHHHHH----HHHHHHHHcCCCEEEEeCCCcccccHHHHHH
Confidence 3456655544 33444444444444544443332222222221 1222224556899999974332223345555
Q ss_pred Hhc
Q 026776 106 IKD 108 (233)
Q Consensus 106 Lr~ 108 (233)
+++
T Consensus 204 l~~ 206 (451)
T COG0541 204 LKE 206 (451)
T ss_pred HHH
Confidence 543
No 355
>cd06329 PBP1_SBP_like_3 Periplasmic solute-binding domain of active transport proteins. Periplasmic solute-binding domain of active transport proteins found in bacteria and Archaea. Members of this group are initial receptors in the process of active transport across cellular membrane, but their substrate specificities are not known in detail. However, they closely resemble the group of AmiC and active transport systems for short-chain amides and urea (FmdDEF), and thus are likely to exhibit a ligand-binding mode similar to that of the amide sensor protein AmiC from Pseudomonas aeruginosa. Moreover, this binding domain has high sequence identity to the family of hydrophobic amino acid transporters (HAAT), and thus it may also be involved in transport of amino acids.
Probab=47.82 E-value=1.8e+02 Score=24.93 Aligned_cols=66 Identities=12% Similarity=0.087 Sum_probs=41.7
Q ss_pred HHHHHHHHHhh--cCCEEEEE--------CCHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCCCCCHHHHHHHHhccC
Q 026776 41 DRKVIERLLTI--SSCKVTAV--------DSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKKIKDSS 110 (233)
Q Consensus 41 ~~~~l~~~L~~--~g~~v~~a--------~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp~~~g~~ll~~Lr~~~ 110 (233)
..+.++..+++ .|..+... .+....+..+ ....+|+|++...- .++..+++.+++..
T Consensus 159 ~~~~~~~~~~~~~~G~~vv~~~~~~~~~~~d~~~~i~~l-----------~~~~~d~v~~~~~~--~~~~~~~~~~~~~g 225 (342)
T cd06329 159 VAAAFKAMLAAKRPDIQIVGEDLHPLGKVKDFSPYVAKI-----------KASGADTVITGNWG--NDLLLLVKQAADAG 225 (342)
T ss_pred HHHHHHHHHHhhcCCcEEeceeccCCCCCCchHHHHHHH-----------HHcCCCEEEEcccC--chHHHHHHHHHHcC
Confidence 44556666777 77666421 3444555555 34568999996543 36788999999876
Q ss_pred CCCCCcEEEEe
Q 026776 111 ALREIPVVIMS 121 (233)
Q Consensus 111 ~~~~~piIvlt 121 (233)
. ..+++..+
T Consensus 226 ~--~~~~~~~~ 234 (342)
T cd06329 226 L--KLPFYTPY 234 (342)
T ss_pred C--CceEEecc
Confidence 5 55655443
No 356
>TIGR00511 ribulose_e2b2 ribose-1,5-bisphosphate isomerase, e2b2 family. The delineation of this family was based originally, in part, on a discussion and neighbor-joining phylogenetic study by Kyrpides and Woese of archaeal and other proteins homologous to the alpha, beta, and delta subunits of eukaryotic initiation factor 2B (eIF-2B), a five-subunit molecule that catalyzes GTP recycling for eIF-2. Recently, Sato, et al. assigned the function ribulose-1,5 bisphosphate isomerase.
Probab=47.78 E-value=1e+02 Score=26.63 Aligned_cols=81 Identities=12% Similarity=0.162 Sum_probs=52.1
Q ss_pred CCCcEEEEEeCCHHHH-HHHHHHHhhcCCEEEEECCHHHHHHHhhhhhhhhccCCCCCcccEEEEcCC--CCC-----CC
Q 026776 27 TEEVHVLAVDDSFVDR-KVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYC--MPG-----MT 98 (233)
Q Consensus 27 ~~~~~ILIVddd~~~~-~~l~~~L~~~g~~v~~a~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~--mp~-----~~ 98 (233)
.++++|.++|..|... ..+...|.+.|..++...+..-+.-+- ..|.||+..+ +.+ .-
T Consensus 139 ~~~f~V~v~EsrP~~~G~~~a~~L~~~gI~vtlI~Dsa~~~~m~--------------~vd~VivGad~v~~nG~v~nki 204 (301)
T TIGR00511 139 GKDIEVIATETRPRKQGHITAKELRDYGIPVTLIVDSAVRYFMK--------------EVDHVVVGADAITANGALINKI 204 (301)
T ss_pred CCcEEEEEecCCCcchHHHHHHHHHHCCCCEEEEehhHHHHHHH--------------hCCEEEECccEEecCCCEEEHH
Confidence 4678999999887643 556777888999888887765444321 3788887543 222 23
Q ss_pred HHHHHHHHhccCCCCCCcEEEEeCCC
Q 026776 99 GYELLKKIKDSSALREIPVVIMSSEN 124 (233)
Q Consensus 99 g~~ll~~Lr~~~~~~~~piIvlt~~~ 124 (233)
|.-.+..+-+.. ++|+++++...
T Consensus 205 GT~~lA~~Ak~~---~vPv~V~a~~~ 227 (301)
T TIGR00511 205 GTSQLALAAREA---RVPFMVAAETY 227 (301)
T ss_pred hHHHHHHHHHHh---CCCEEEEcccc
Confidence 544454443322 78999987654
No 357
>cd01743 GATase1_Anthranilate_Synthase Type 1 glutamine amidotransferase (GATase1) domain found in Anthranilate synthase. Type 1 glutamine amidotransferase (GATase1) domain found in Anthranilate synthase (ASase). This group contains proteins similar to para-aminobenzoate (PABA) synthase and ASase. These enzymes catalyze similar reactions and produce similar products, PABA and ortho-aminobenzoate (anthranilate). Each enzyme is composed of non-identical subunits: a glutamine amidotransferase subunit (component II) and a subunit that produces an aminobenzoate products (component I). ASase catalyses the synthesis of anthranilate from chorismate and glutamine and is a tetrameric protein comprising two copies each of components I and II. Component II of ASase belongs to the family of triad GTases which hydrolyze glutamine and transfer nascent ammonia between the active sites. In some bacteria, such as Escherichia coli, component II can be much larger than in other organisms, due to the prese
Probab=47.72 E-value=49 Score=25.97 Aligned_cols=30 Identities=17% Similarity=0.119 Sum_probs=24.4
Q ss_pred EEEEeCCHHHHHHHHHHHhhcCCEEEEECC
Q 026776 32 VLAVDDSFVDRKVIERLLTISSCKVTAVDS 61 (233)
Q Consensus 32 ILIVddd~~~~~~l~~~L~~~g~~v~~a~~ 61 (233)
|||+|........+.++|++.|+++.....
T Consensus 1 il~~~~~~~~~~~~~~~l~~~G~~~~~~~~ 30 (184)
T cd01743 1 ILLIDNYDSFTYNLVQYLRELGAEVVVVRN 30 (184)
T ss_pred CEEEeCCCccHHHHHHHHHHcCCceEEEeC
Confidence 688988888888899999999987766543
No 358
>PF11072 DUF2859: Protein of unknown function (DUF2859); InterPro: IPR021300 This model describes a protein family exemplified by PFL_4695 of Pseudomonas fluorescens Pf-5. Full-length proteins in this family show some architectural variety, but this model represents a conserved domain. Most or all member proteins belong to laterally transferred chromosomal islands called integrative conjugative elements, or ICE.
Probab=47.72 E-value=1.3e+02 Score=23.16 Aligned_cols=69 Identities=25% Similarity=0.290 Sum_probs=42.4
Q ss_pred EEEEEeCCHHHHHHHHHHH---hhcCC--EEEEECCHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCCCCCHHHHHHH
Q 026776 31 HVLAVDDSFVDRKVIERLL---TISSC--KVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKK 105 (233)
Q Consensus 31 ~ILIVddd~~~~~~l~~~L---~~~g~--~v~~a~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp~~~g~~ll~~ 105 (233)
-+.||.||+..+.+|+.-. ++.+- -|+-+.+ .++++.++ ..-+.+ .|--.+|-++.++
T Consensus 64 plFlVGdD~~S~~WL~~~~~~L~~l~AvGlVVNV~t-~~~L~~Lr-----------~lapgl-----~l~P~sgddLA~r 126 (142)
T PF11072_consen 64 PLFLVGDDPLSRQWLQQNAEELKQLGAVGLVVNVAT-EAALQRLR-----------QLAPGL-----PLLPVSGDDLARR 126 (142)
T ss_pred CEEEEcCCHHHHHHHHHHHHHHHHCCCeEEEEecCC-HHHHHHHH-----------HHcCCC-----eecCCCHHHHHHH
Confidence 3899999999999997664 44442 2333444 44555552 222333 3445789999999
Q ss_pred HhccCCCCCCcEEEE
Q 026776 106 IKDSSALREIPVVIM 120 (233)
Q Consensus 106 Lr~~~~~~~~piIvl 120 (233)
|.-. +-|+++-
T Consensus 127 L~l~----HYPvLIt 137 (142)
T PF11072_consen 127 LGLS----HYPVLIT 137 (142)
T ss_pred hCCC----cccEEee
Confidence 8543 5566643
No 359
>TIGR00888 guaA_Nterm GMP synthase (glutamine-hydrolyzing), N-terminal domain or A subunit. separate polypeptide chains in most of the Archaea. This N-terminal region would be the smaller subunit.
Probab=47.40 E-value=1e+02 Score=24.27 Aligned_cols=28 Identities=21% Similarity=0.127 Sum_probs=24.5
Q ss_pred EEEEeCCHHHHHHHHHHHhhcCCEEEEE
Q 026776 32 VLAVDDSFVDRKVIERLLTISSCKVTAV 59 (233)
Q Consensus 32 ILIVddd~~~~~~l~~~L~~~g~~v~~a 59 (233)
|+|||....+...+.+.|+..|+.+...
T Consensus 1 i~iiD~g~~~~~~l~~~l~~~g~~~~~~ 28 (188)
T TIGR00888 1 ILVLDFGSQYTQLIARRLRELGVYSELV 28 (188)
T ss_pred CEEEECCchHHHHHHHHHHHcCCEEEEE
Confidence 6899999999999999999999877665
No 360
>COG5012 Predicted cobalamin binding protein [General function prediction only]
Probab=47.39 E-value=74 Score=26.37 Aligned_cols=97 Identities=14% Similarity=0.210 Sum_probs=61.3
Q ss_pred EEEEeC--CHHHHHHHHHHHhhcCCEEEEEC---CHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCCC-CC-HHHHHH
Q 026776 32 VLAVDD--SFVDRKVIERLLTISSCKVTAVD---SGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPG-MT-GYELLK 104 (233)
Q Consensus 32 ILIVdd--d~~~~~~l~~~L~~~g~~v~~a~---~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp~-~~-g~~ll~ 104 (233)
+-.|+. +..=...+..+|+..||++.-.. ..++.++.. ..+++|+|-+..-|-. |- -.++++
T Consensus 109 igtveGDvHdIGk~iV~~ml~~aGfevidLG~dvP~e~fve~a-----------~e~k~d~v~~SalMTttm~~~~~viE 177 (227)
T COG5012 109 IGTVEGDVHDIGKNIVATMLEAAGFEVIDLGRDVPVEEFVEKA-----------KELKPDLVSMSALMTTTMIGMKDVIE 177 (227)
T ss_pred EEeecccHHHHHHHHHHHHHHhCCcEEEecCCCCCHHHHHHHH-----------HHcCCcEEechHHHHHHHHHHHHHHH
Confidence 334443 34455667788888999988654 345566665 4567999988776652 22 346777
Q ss_pred HHhccCCCCCCcEEEEeCCC--cHHHHHHHHHcCCceEEeCC
Q 026776 105 KIKDSSALREIPVVIMSSEN--ILARIDRCLEDGAEDFIVKP 144 (233)
Q Consensus 105 ~Lr~~~~~~~~piIvlt~~~--~~~~~~~al~~Ga~dyL~KP 144 (233)
.|++.+- +-+++++.+.. +.+. +-+.|+|.|-.-.
T Consensus 178 ~L~eeGi--Rd~v~v~vGGApvtq~~---a~~iGAD~~~~dA 214 (227)
T COG5012 178 LLKEEGI--RDKVIVMVGGAPVTQDW---ADKIGADAYAEDA 214 (227)
T ss_pred HHHHcCC--ccCeEEeecCccccHHH---HHHhCCCccCcCH
Confidence 8887765 66666664433 2222 3467999887654
No 361
>PLN02775 Probable dihydrodipicolinate reductase
Probab=47.28 E-value=1.9e+02 Score=24.99 Aligned_cols=116 Identities=11% Similarity=0.156 Sum_probs=64.1
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHhhcCCEEEEE------------------------CCHHHHHHHhhhhhhhhccCCCCC
Q 026776 28 EEVHVLAVDDSFVDRKVIERLLTISSCKVTAV------------------------DSGRRALQFLGLDEEQSINGFDGL 83 (233)
Q Consensus 28 ~~~~ILIVddd~~~~~~l~~~L~~~g~~v~~a------------------------~~~~~al~~l~~~~~~~~~~~~~~ 83 (233)
..++|+|..---.....+.+.+...+++++.+ ++.++++..+ ...
T Consensus 10 ~~i~V~V~Ga~G~MG~~~~~av~~~~~~Lv~~~~~~~~~~~~~~~~~g~~v~~~~~~dl~~~l~~~-----------~~~ 78 (286)
T PLN02775 10 SAIPIMVNGCTGKMGHAVAEAAVSAGLQLVPVSFTGPAGVGVTVEVCGVEVRLVGPSEREAVLSSV-----------KAE 78 (286)
T ss_pred CCCeEEEECCCChHHHHHHHHHhcCCCEEEEEeccccccccccceeccceeeeecCccHHHHHHHh-----------hcc
Confidence 34789999887666666665554466666543 2223333222 233
Q ss_pred cccEEEEcCCCCCCCHHHHHHHHhccCCCCCCcEEEEeCCCcHHHHHHHHHc-CCceEEeCCCCHHH--HHHHHHHHhh
Q 026776 84 KVDLIITDYCMPGMTGYELLKKIKDSSALREIPVVIMSSENILARIDRCLED-GAEDFIVKPVKLSD--VKRIKDYLTR 159 (233)
Q Consensus 84 ~~DlvllD~~mp~~~g~~ll~~Lr~~~~~~~~piIvlt~~~~~~~~~~al~~-Ga~dyL~KP~~~~e--L~~~~~~l~~ 159 (233)
.+|+|++|...|..- .+.++...+. .+|+|+-|.-.+.+...+..+. ++--++.-.++..- +.++...+.+
T Consensus 79 ~~~~VvIDFT~P~a~-~~~~~~~~~~----g~~~VvGTTG~~~e~l~~~~~~~~i~vv~apNfSiGv~ll~~l~~~aA~ 152 (286)
T PLN02775 79 YPNLIVVDYTLPDAV-NDNAELYCKN----GLPFVMGTTGGDRDRLLKDVEESGVYAVIAPQMGKQVVAFQAAMEIMAE 152 (286)
T ss_pred CCCEEEEECCChHHH-HHHHHHHHHC----CCCEEEECCCCCHHHHHHHHhcCCccEEEECcccHHHHHHHHHHHHHHH
Confidence 699999999988643 3344444332 5677777666555554444443 44444444455444 2344444333
No 362
>TIGR00381 cdhD CO dehydrogenase/acetyl-CoA synthase, delta subunit. This is the small subunit of a heterodimer which catalyzes the reaction CO + H2O + Acceptor = CO2 + Reduced acceptor and is involved in the synthesis of acetyl-CoA from CO2 and H2.
Probab=47.25 E-value=2.2e+02 Score=25.73 Aligned_cols=73 Identities=14% Similarity=0.069 Sum_probs=31.9
Q ss_pred cccEEEEcCCCCCCCHHHHHHHHhccCCCCCCcEEEEeCCC-c-HHHHHHHHHcCCceEEeCCCCHHHHHHHHHHHh
Q 026776 84 KVDLIITDYCMPGMTGYELLKKIKDSSALREIPVVIMSSEN-I-LARIDRCLEDGAEDFIVKPVKLSDVKRIKDYLT 158 (233)
Q Consensus 84 ~~DlvllD~~mp~~~g~~ll~~Lr~~~~~~~~piIvlt~~~-~-~~~~~~al~~Ga~dyL~KP~~~~eL~~~~~~l~ 158 (233)
..-+||....-|..|.--+-+.+..... .-|+|.-.... + ......|.+.|+.=...-|.+...+..+...+.
T Consensus 188 ~vPLIL~gsg~~~kD~eVLeaaLe~~~G--~kpLL~SAt~e~Ny~~ia~lAk~yg~~Vvv~s~~Din~ak~Ln~kL~ 262 (389)
T TIGR00381 188 DVPIVIGGSGNPEKDPLVLEKAAEVAEG--ERCLLASANLDLDYEKIANAAKKYGHVVLSWTIMDINMQKTLNRYLL 262 (389)
T ss_pred CCCEEEeCCCCCcCCHHHHHHHHHHhCC--CCcEEEecCchhhHHHHHHHHHHhCCeEEEEcCCcHHHHHHHHHHHH
Confidence 3456666554454444333233332221 22333322212 2 233444556666444444566666555555544
No 363
>PRK14076 pnk inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=47.17 E-value=2.3e+02 Score=26.94 Aligned_cols=110 Identities=17% Similarity=0.163 Sum_probs=57.6
Q ss_pred CCCcEEEEEeC--CHHHH---HHHHHHHhhcCCEEEEECCHHHHHHH-hhhhhhhhccCCCCCcccEEEEcCCCCCCCHH
Q 026776 27 TEEVHVLAVDD--SFVDR---KVIERLLTISSCKVTAVDSGRRALQF-LGLDEEQSINGFDGLKVDLIITDYCMPGMTGY 100 (233)
Q Consensus 27 ~~~~~ILIVdd--d~~~~---~~l~~~L~~~g~~v~~a~~~~~al~~-l~~~~~~~~~~~~~~~~DlvllD~~mp~~~g~ 100 (233)
.++++|.|+-. .+... ..+..+|++.|+++.........+.. +...... .. ....+|+||+ -+.||
T Consensus 288 ~~~~~i~iv~~~~~~~~~~~~~~i~~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~-~~--~~~~~dlvi~----lGGDG- 359 (569)
T PRK14076 288 IKPTKFGIVSRIDNEEAINLALKIIKYLDSKGIPYELESFLYNKLKNRLNEECNL-ID--DIEEISHIIS----IGGDG- 359 (569)
T ss_pred cCCcEEEEEcCCCCHHHHHHHHHHHHHHHHCCCEEEEechhhhhhcccccccccc-cc--cccCCCEEEE----ECCcH-
Confidence 34567888733 23333 34455566678777665433222210 0000000 00 0114677766 36677
Q ss_pred HHHHHHhccCCCCCCcEEEEeCCCcHHHHHHHHHcCCceEEeCCCCHHHHHHHHHHHhh
Q 026776 101 ELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVKLSDVKRIKDYLTR 159 (233)
Q Consensus 101 ~ll~~Lr~~~~~~~~piIvlt~~~~~~~~~~al~~Ga~dyL~KP~~~~eL~~~~~~l~~ 159 (233)
.+++..|.... ..+||+-+- .|=.+||. .++.+++...++.+.+
T Consensus 360 T~L~aa~~~~~-~~~PilGin-------------~G~lGFL~-~~~~~~~~~~l~~~~~ 403 (569)
T PRK14076 360 TVLRASKLVNG-EEIPIICIN-------------MGTVGFLT-EFSKEEIFKAIDSIIS 403 (569)
T ss_pred HHHHHHHHhcC-CCCCEEEEc-------------CCCCCcCc-ccCHHHHHHHHHHHHc
Confidence 46666665332 378888663 34466776 6777888777776654
No 364
>PRK07428 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=47.16 E-value=1.2e+02 Score=26.18 Aligned_cols=56 Identities=13% Similarity=0.235 Sum_probs=40.7
Q ss_pred HHHHHHHhccCCCCCCcEEEEeCCCcHHHHHHHHHcCCceEEeCCCCHHHHHHHHHHHh
Q 026776 100 YELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVKLSDVKRIKDYLT 158 (233)
Q Consensus 100 ~~ll~~Lr~~~~~~~~piIvlt~~~~~~~~~~al~~Ga~dyL~KP~~~~eL~~~~~~l~ 158 (233)
.+.++.+|+..+ ....|.+.. .+.+++.+++++|+|..++-+++++++.+++..+.
T Consensus 183 ~~av~~~r~~~~--~~~~I~VEv-~tleea~eA~~~GaD~I~LDn~~~e~l~~av~~~~ 238 (288)
T PRK07428 183 GEAITRIRQRIP--YPLTIEVET-ETLEQVQEALEYGADIIMLDNMPVDLMQQAVQLIR 238 (288)
T ss_pred HHHHHHHHHhCC--CCCEEEEEC-CCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHH
Confidence 456667776543 223444443 45677889999999999999999999998887653
No 365
>PRK14326 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=47.15 E-value=2.4e+02 Score=26.26 Aligned_cols=97 Identities=13% Similarity=0.192 Sum_probs=56.2
Q ss_pred eCCHHHHHHHHHHHhhcCCEEEEECCHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCCCCCH----H---HHHHHHhc
Q 026776 36 DDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTG----Y---ELLKKIKD 108 (233)
Q Consensus 36 ddd~~~~~~l~~~L~~~g~~v~~a~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp~~~g----~---~ll~~Lr~ 108 (233)
--|....+.|...|...||.+... ....|+|+++..---.+. + ..++.+++
T Consensus 24 ~~N~~dse~~~~~L~~~G~~~~~~----------------------~e~ADvvviNTCtv~~~A~~k~~~~i~~~~~~k~ 81 (502)
T PRK14326 24 QMNVHDSERLAGLLEAAGYVRAAE----------------------GQDADVVVFNTCAVRENADNRLYGNLGHLAPVKR 81 (502)
T ss_pred CCcHHHHHHHHHHHHHCCCEECCC----------------------cCCCCEEEEECCCeeehHHHHHHHHHHHHHHHHH
Confidence 357777888999998889876521 124799999865433222 2 44455554
Q ss_pred cCCCCCCcEEEEeCCCcHHHHHHHHH-cCCceEEeCCCCHHHHHHHHHHH
Q 026776 109 SSALREIPVVIMSSENILARIDRCLE-DGAEDFIVKPVKLSDVKRIKDYL 157 (233)
Q Consensus 109 ~~~~~~~piIvlt~~~~~~~~~~al~-~Ga~dyL~KP~~~~eL~~~~~~l 157 (233)
..+ ..+|| +++..-.....+.++ ....|++..+.....+..++..+
T Consensus 82 ~~p--~~~Vv-vgGc~a~~~~ee~~~~~p~VD~Vvg~~~~~~i~~ll~~~ 128 (502)
T PRK14326 82 ANP--GMQIA-VGGCLAQKDRDTILKRAPWVDVVFGTHNIGSLPTLLERA 128 (502)
T ss_pred hCC--CCEEE-EECcccccCHHHHHhhCCCCeEEECCCCHHHHHHHHHHH
Confidence 433 55555 444333233334443 33345777777666666665544
No 366
>PLN02316 synthase/transferase
Probab=47.10 E-value=2.8e+02 Score=28.55 Aligned_cols=69 Identities=10% Similarity=0.085 Sum_probs=41.3
Q ss_pred ccEEEEcCCCCCCCHHHHHHHHhccCCCCCCcEEEEeCCCcHHHHHHH---------HHcCCceEEeCCCCHHHHHHHHH
Q 026776 85 VDLIITDYCMPGMTGYELLKKIKDSSALREIPVVIMSSENILARIDRC---------LEDGAEDFIVKPVKLSDVKRIKD 155 (233)
Q Consensus 85 ~DlvllD~~mp~~~g~~ll~~Lr~~~~~~~~piIvlt~~~~~~~~~~a---------l~~Ga~dyL~KP~~~~eL~~~~~ 155 (233)
.|++++= .+-..-|+..+..++. .+|+|+-...+..+.+... ...|..+|+..|.+.+.|...+.
T Consensus 920 ADiflmP-S~~EP~GLvqLEAMa~-----GtppVvs~vGGL~DtV~d~d~~~~~~~~~g~~~tGflf~~~d~~aLa~AL~ 993 (1036)
T PLN02316 920 ADFILVP-SIFEPCGLTQLTAMRY-----GSIPVVRKTGGLFDTVFDVDHDKERAQAQGLEPNGFSFDGADAAGVDYALN 993 (1036)
T ss_pred CcEEEeC-CcccCccHHHHHHHHc-----CCCeEEEcCCCcHhhccccccccccccccccCCceEEeCCCCHHHHHHHHH
Confidence 5777663 2345668888888774 4455553333333333221 01247899999999999876655
Q ss_pred HHhh
Q 026776 156 YLTR 159 (233)
Q Consensus 156 ~l~~ 159 (233)
++..
T Consensus 994 raL~ 997 (1036)
T PLN02316 994 RAIS 997 (1036)
T ss_pred HHHh
Confidence 5443
No 367
>TIGR01684 viral_ppase viral phosphatase. These proteins also include an N-terminal domain (ca. 125 aas) that is unique to this clade.
Probab=46.92 E-value=77 Score=27.50 Aligned_cols=109 Identities=10% Similarity=0.094 Sum_probs=59.4
Q ss_pred CcEEEEEeCC-HHHHHHHHHHHhh--cCCEEEEECCHH--HHH-HHhhhhhhh--hc--cCCCCCcccEEEEcCCCC---
Q 026776 29 EVHVLAVDDS-FVDRKVIERLLTI--SSCKVTAVDSGR--RAL-QFLGLDEEQ--SI--NGFDGLKVDLIITDYCMP--- 95 (233)
Q Consensus 29 ~~~ILIVddd-~~~~~~l~~~L~~--~g~~v~~a~~~~--~al-~~l~~~~~~--~~--~~~~~~~~DlvllD~~mp--- 95 (233)
++.++.+.|+ ..+|..++..++. .|+..+...... ..| ++.-.+..+ .+ +.+--..+.+|+.|+.--
T Consensus 60 ~~~~~~~~D~m~~~R~~~k~~~k~~~lGh~~vl~~~~~~y~~L~EW~v~~~~~v~~l~~~~~~~~~~kvIvFDLDgTLi~ 139 (301)
T TIGR01684 60 KLQVFSCADDMVDLRAHLKTAFKTSYFGHTFVLFHKPAMYACLNEWYVFELEEIYNLNLPSKVFEPPHVVVFDLDSTLIT 139 (301)
T ss_pred EEEEEEcCCcHHHHHHHHHHHhcccccceEEEecCCccHHHHHHHHHcccHhhhhhccccccccccceEEEEecCCCCcC
Confidence 4667766665 7778888887753 576555433211 111 221111110 00 111224588999998532
Q ss_pred --------CCCHHHHHHHHhccCCCCCCcEEEEeCCCcHHHHHHHHHcCCceEE
Q 026776 96 --------GMTGYELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFI 141 (233)
Q Consensus 96 --------~~~g~~ll~~Lr~~~~~~~~piIvlt~~~~~~~~~~al~~Ga~dyL 141 (233)
+-.-.+++++|++. ++++.+.|+..........-..|.+.|+
T Consensus 140 ~~~~v~irdPgV~EaL~~Lkek----GikLaIaTS~~Re~v~~~L~~lGLd~YF 189 (301)
T TIGR01684 140 DEEPVRIRDPRIYDSLTELKKR----GCILVLWSYGDRDHVVESMRKVKLDRYF 189 (301)
T ss_pred CCCccccCCHHHHHHHHHHHHC----CCEEEEEECCCHHHHHHHHHHcCCCccc
Confidence 22345888888875 5677777765544433333456887665
No 368
>PRK13146 hisH imidazole glycerol phosphate synthase subunit HisH; Provisional
Probab=46.84 E-value=65 Score=26.11 Aligned_cols=36 Identities=11% Similarity=0.073 Sum_probs=29.2
Q ss_pred CcEEEEEeCCHHHHHHHHHHHhhcCC--EEEEECCHHH
Q 026776 29 EVHVLAVDDSFVDRKVIERLLTISSC--KVTAVDSGRR 64 (233)
Q Consensus 29 ~~~ILIVddd~~~~~~l~~~L~~~g~--~v~~a~~~~~ 64 (233)
+++|.|||----+...+.+.|+..|+ ++....+.++
T Consensus 1 ~~~~~iid~g~gn~~s~~~al~~~g~~~~v~~~~~~~~ 38 (209)
T PRK13146 1 MMTVAIIDYGSGNLRSAAKALERAGAGADVVVTADPDA 38 (209)
T ss_pred CCeEEEEECCCChHHHHHHHHHHcCCCccEEEECCHHH
Confidence 36899999887777888899999998 7777776655
No 369
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=46.84 E-value=79 Score=27.20 Aligned_cols=53 Identities=23% Similarity=0.144 Sum_probs=32.8
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhcCCE----EEEECCHHHHHHHhhhhhhhhccCCCCCcccEEEEcC
Q 026776 30 VHVLAVDDSFVDRKVIERLLTISSCK----VTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDY 92 (233)
Q Consensus 30 ~~ILIVddd~~~~~~l~~~L~~~g~~----v~~a~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~ 92 (233)
..|.-||-+....+..++.+.-.|+. -....+.-+.++.++ ...+||+||+|-
T Consensus 147 ~~v~~VD~S~~al~~a~~N~~lNg~~~~~~~~~~~Dvf~~l~~~~----------~~~~fD~IIlDP 203 (286)
T PF10672_consen 147 KEVVSVDSSKRALEWAKENAALNGLDLDRHRFIQGDVFKFLKRLK----------KGGRFDLIILDP 203 (286)
T ss_dssp SEEEEEES-HHHHHHHHHHHHHTT-CCTCEEEEES-HHHHHHHHH----------HTT-EEEEEE--
T ss_pred CEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHHHh----------cCCCCCEEEECC
Confidence 46889999998888888888766642 233556555555442 234799999995
No 370
>cd08179 NADPH_BDH NADPH-dependent butanol dehydrogenase involved in the butanol and ethanol formation pathway in bacteria. NADPH-dependent butanol dehydrogenase (BDH) is involved in the butanol and ethanol formation pathway of some bacteria. The fermentation process is characterized by an acid producing growth phase, followed by a solvent producing phase. The latter phase is associated with the induction of solventogenic enzymes such as butanol dehydrogenase. The activity of the enzymes require NADPH as cofactor, as well as divalent ions zinc or iron. This family is a member of the iron-containing alcohol dehydrogenase superfamily. Protein structure has a dehydroquinate synthase-like fold.
Probab=46.66 E-value=1.3e+02 Score=26.78 Aligned_cols=63 Identities=14% Similarity=0.176 Sum_probs=40.0
Q ss_pred cEEEEEeCCHHHH-----HHHHHHHhhcCCEEEEECC---------HHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCC
Q 026776 30 VHVLAVDDSFVDR-----KVIERLLTISSCKVTAVDS---------GRRALQFLGLDEEQSINGFDGLKVDLIITDYCMP 95 (233)
Q Consensus 30 ~~ILIVddd~~~~-----~~l~~~L~~~g~~v~~a~~---------~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp 95 (233)
-|+|||-|..... ..+...|+..|+++..++. ..++.+.+ +...+|+||- +.
T Consensus 24 ~r~livt~~~~~~~~g~~~~v~~~L~~~g~~~~~~~~v~~~p~~~~v~~~~~~~-----------~~~~~D~IIa---vG 89 (375)
T cd08179 24 KKAFIVTGGGSMKKFGFLDKVEAYLKEAGIEVEVFEGVEPDPSVETVLKGAEAM-----------REFEPDWIIA---LG 89 (375)
T ss_pred CeEEEEeCchHHHhCChHHHHHHHHHHcCCeEEEeCCCCCCcCHHHHHHHHHHH-----------HhcCCCEEEE---eC
Confidence 4788887765433 5677778877877766532 33444444 4557898874 56
Q ss_pred CCCHHHHHHHH
Q 026776 96 GMTGYELLKKI 106 (233)
Q Consensus 96 ~~~g~~ll~~L 106 (233)
+.+-+++.+.+
T Consensus 90 GGSviD~AK~i 100 (375)
T cd08179 90 GGSPIDAAKAM 100 (375)
T ss_pred CccHHHHHHHH
Confidence 66666666655
No 371
>PF01008 IF-2B: Initiation factor 2 subunit family; InterPro: IPR000649 Initiation factor 2 binds to Met-tRNA, GTP and the small ribosomal subunit. The eukaryotic translation initiation factor EIF-2B is a complex made up of five different subunits, alpha, beta, gamma, delta and epsilon, and catalyses the exchange of EIF-2-bound GDP for GTP. This family includes initiation factor 2B alpha, beta and delta subunits from eukaryotes; related proteins from archaebacteria and IF-2 from prokaryotes and also contains a subfamily of proteins in eukaryotes, archaeae (e.g. Pyrococcus furiosus), or eubacteria such as Bacillus subtilis and Thermotoga maritima. Many of these proteins were initially annotated as putative translation initiation factors despite the fact that there is no evidence for the requirement of an IF2 recycling factor in prokaryotic translation initiation. Recently, one of these proteins from B. subtilis has been functionally characterised as a 5-methylthioribose-1-phosphate isomerase (MTNA) []. This enzyme participates in the methionine salvage pathway catalysing the isomerisation of 5-methylthioribose-1-phosphate to 5-methylthioribulose-1-phosphate []. The methionine salvage pathway leads to the synthesis of methionine from methylthioadenosine, the end product of the spermidine and spermine anabolism in many species.; GO: 0044237 cellular metabolic process; PDB: 1VB5_A 1T5O_D 3A11_E 3VM6_C 1W2W_A 1T9K_A 3ECS_B 2YRF_A 2YVK_B 2A0U_A ....
Probab=46.56 E-value=51 Score=27.90 Aligned_cols=81 Identities=12% Similarity=0.172 Sum_probs=44.0
Q ss_pred CCCcEEEEEeCCHHHH-HHHHHHHhhcCCEEEEECCHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCCCC-------C
Q 026776 27 TEEVHVLAVDDSFVDR-KVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGM-------T 98 (233)
Q Consensus 27 ~~~~~ILIVddd~~~~-~~l~~~L~~~g~~v~~a~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp~~-------~ 98 (233)
.++++|.|+|..|... ..+.+.|...|+.|....+..-+.-+- . ..|.||+....=-. -
T Consensus 131 ~~~~~V~v~es~P~~eG~~~a~~L~~~gi~v~~i~d~~~~~~m~------------~-~vd~VliGad~v~~nG~v~nk~ 197 (282)
T PF01008_consen 131 GKKFRVIVLESRPYNEGRLMAKELAEAGIPVTLIPDSAVGYVMP------------R-DVDKVLIGADAVLANGGVVNKV 197 (282)
T ss_dssp TEEEEEEEE--TTTTHHHTHHHHHHHTT-EEEEE-GGGHHHHHH------------C-TESEEEEE-SEEETTS-EEEET
T ss_pred CCeEEEEEccCCcchhhhhHHHHhhhcceeEEEEechHHHHHHH------------H-hCCeeEEeeeEEecCCCEeehh
Confidence 3578899999876433 346666778899998887755433321 2 37888876543222 3
Q ss_pred HHHHHHHHhccCCCCCCcEEEEeCC
Q 026776 99 GYELLKKIKDSSALREIPVVIMSSE 123 (233)
Q Consensus 99 g~~ll~~Lr~~~~~~~~piIvlt~~ 123 (233)
|.-.+..+-+. . ++|+++++..
T Consensus 198 Gt~~~a~~Ak~-~--~vPv~v~~~~ 219 (282)
T PF01008_consen 198 GTLQLALAAKE-F--NVPVYVLAES 219 (282)
T ss_dssp THHHHHHHHHH-T--T-EEEEE--G
T ss_pred hHHHHHHHHHh-h--CCCEEEEccc
Confidence 44444444332 2 7899999765
No 372
>TIGR01361 DAHP_synth_Bsub phospho-2-dehydro-3-deoxyheptonate aldolase. The member of this family from Synechocystis PCC 6803, CcmA, was shown to be essential for carboxysome formation. However, no other candidate for this enzyme is present in that species, chorismate biosynthesis does occur, other species having this protein lack carboxysomes but appear to make chorismate, and a requirement of CcmA for carboxysome formation does not prohibit a role in chorismate biosynthesis.
Probab=46.40 E-value=1.8e+02 Score=24.54 Aligned_cols=62 Identities=11% Similarity=0.225 Sum_probs=38.9
Q ss_pred cccEEEEcCCC----CC---CCHHHHHHHHhccCCCCCCcEEEEeCCC-c-----HHHHHHHHHcCCce-EEeCCCCHH
Q 026776 84 KVDLIITDYCM----PG---MTGYELLKKIKDSSALREIPVVIMSSEN-I-----LARIDRCLEDGAED-FIVKPVKLS 148 (233)
Q Consensus 84 ~~DlvllD~~m----p~---~~g~~ll~~Lr~~~~~~~~piIvlt~~~-~-----~~~~~~al~~Ga~d-yL~KP~~~~ 148 (233)
..+++|+.... |- .-.+..+..+++.. .+||++-+++. . ......|+..||++ ++.|-++++
T Consensus 160 n~~i~l~~rG~s~y~~~~~~~~dl~~i~~lk~~~---~~pV~~ds~Hs~G~r~~~~~~~~aAva~Ga~gl~iE~H~t~d 235 (260)
T TIGR01361 160 NGNVILCERGIRTFEKATRNTLDLSAVPVLKKET---HLPIIVDPSHAAGRRDLVIPLAKAAIAAGADGLMIEVHPDPE 235 (260)
T ss_pred CCcEEEEECCCCCCCCCCcCCcCHHHHHHHHHhh---CCCEEEcCCCCCCccchHHHHHHHHHHcCCCEEEEEeCCCcc
Confidence 35789987622 21 12355666777542 67888745552 2 44556788999998 777766643
No 373
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=46.34 E-value=1.6e+02 Score=27.55 Aligned_cols=30 Identities=17% Similarity=0.113 Sum_probs=25.5
Q ss_pred CCcEEEEeCCCcHHHHHHHHHcCCceEEeC
Q 026776 114 EIPVVIMSSENILARIDRCLEDGAEDFIVK 143 (233)
Q Consensus 114 ~~piIvlt~~~~~~~~~~al~~Ga~dyL~K 143 (233)
.+|||+-.+-....++.+|+.+||+.++.=
T Consensus 352 ~~~viadgGir~~gdi~KAla~GA~~vm~G 381 (502)
T PRK07107 352 YIPICSDGGIVYDYHMTLALAMGADFIMLG 381 (502)
T ss_pred cceEEEcCCCCchhHHHHHHHcCCCeeeeC
Confidence 488988888788899999999999988653
No 374
>cd03825 GT1_wcfI_like This family is most closely related to the GT1 family of glycosyltransferases. wcfI in Bacteroides fragilis has been shown to be involved in the capsular polysaccharide biosynthesis.
Probab=46.21 E-value=85 Score=26.60 Aligned_cols=75 Identities=19% Similarity=0.255 Sum_probs=42.8
Q ss_pred cEEEEEeCC------HHHHHHHHHHHhhcCCEEEEECCHHH-HHHHhhhhhhhhccCCCCCcccEEEEcCCCCCCCHHHH
Q 026776 30 VHVLAVDDS------FVDRKVIERLLTISSCKVTAVDSGRR-ALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYEL 102 (233)
Q Consensus 30 ~~ILIVddd------~~~~~~l~~~L~~~g~~v~~a~~~~~-al~~l~~~~~~~~~~~~~~~~DlvllD~~mp~~~g~~l 102 (233)
|+||++-.. ......+...|.+.|++|........ ....+ ....+|+|.+-......-....
T Consensus 1 MkIl~~~~~~~~gG~~~~~~~l~~~l~~~G~~v~v~~~~~~~~~~~~-----------~~~~~diih~~~~~~~~~~~~~ 69 (365)
T cd03825 1 MKVLHLNTSDISGGAARAAYRLHRALQAAGVDSTMLVQEKKALISKI-----------EIINADIVHLHWIHGGFLSIED 69 (365)
T ss_pred CeEEEEecCCCCCcHHHHHHHHHHHHHhcCCceeEEEeecchhhhCh-----------hcccCCEEEEEccccCccCHHH
Confidence 467777443 34556677778888988776543332 22222 4568999988553333334444
Q ss_pred HHHHhccCCCCCCcEEEE
Q 026776 103 LKKIKDSSALREIPVVIM 120 (233)
Q Consensus 103 l~~Lr~~~~~~~~piIvl 120 (233)
+..+. ..+|+|+.
T Consensus 70 ~~~~~-----~~~~~v~~ 82 (365)
T cd03825 70 LSKLL-----DRKPVVWT 82 (365)
T ss_pred HHHHH-----cCCCEEEE
Confidence 44442 15566654
No 375
>PRK07695 transcriptional regulator TenI; Provisional
Probab=46.17 E-value=1.5e+02 Score=23.58 Aligned_cols=54 Identities=20% Similarity=0.313 Sum_probs=38.3
Q ss_pred CcccEEEEcCCCCC-------CCHHHHHHHHhccCCCCCCcEEEEeCCCcHHHHHHHHHcCCceE
Q 026776 83 LKVDLIITDYCMPG-------MTGYELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDF 140 (233)
Q Consensus 83 ~~~DlvllD~~mp~-------~~g~~ll~~Lr~~~~~~~~piIvlt~~~~~~~~~~al~~Ga~dy 140 (233)
...|.|++....+. ..|++.++++.+.. .+|++++.+- +.+.+.++++.|++.+
T Consensus 114 ~Gadyi~~g~v~~t~~k~~~~~~g~~~l~~~~~~~---~ipvia~GGI-~~~~~~~~~~~Ga~gv 174 (201)
T PRK07695 114 NGADYVVYGHVFPTDCKKGVPARGLEELSDIARAL---SIPVIAIGGI-TPENTRDVLAAGVSGI 174 (201)
T ss_pred cCCCEEEECCCCCCCCCCCCCCCCHHHHHHHHHhC---CCCEEEEcCC-CHHHHHHHHHcCCCEE
Confidence 35788877643221 23678888887642 6899887666 6777888999999887
No 376
>cd06348 PBP1_ABC_ligand_binding_like_13 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=46.09 E-value=1.9e+02 Score=24.70 Aligned_cols=64 Identities=14% Similarity=0.205 Sum_probs=41.1
Q ss_pred HHHHHHHHHHhhcCCEEEEE-------CCHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCCCCCHHHHHHHHhccCCC
Q 026776 40 VDRKVIERLLTISSCKVTAV-------DSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKKIKDSSAL 112 (233)
Q Consensus 40 ~~~~~l~~~L~~~g~~v~~a-------~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp~~~g~~ll~~Lr~~~~~ 112 (233)
.....++..+++.|+++... .+....+..+ ....+|+|++.. ...+...+++.+++...
T Consensus 152 ~~~~~~~~~~~~~g~~v~~~~~~~~~~~d~~~~v~~i-----------~~~~~d~vi~~~--~~~~~~~~~~~~~~~g~- 217 (344)
T cd06348 152 SETEIFQKALRDQGLNLVTVQTFQTGDTDFQAQITAV-----------LNSKPDLIVISA--LAADGGNLVRQLRELGY- 217 (344)
T ss_pred HHHHHHHHHHHHcCCEEEEEEeeCCCCCCHHHHHHHH-----------HhcCCCEEEECC--cchhHHHHHHHHHHcCC-
Confidence 34456667777788776542 2445555555 455789999865 34566788898888654
Q ss_pred CCCcEE
Q 026776 113 REIPVV 118 (233)
Q Consensus 113 ~~~piI 118 (233)
..+++
T Consensus 218 -~~~~~ 222 (344)
T cd06348 218 -NGLIV 222 (344)
T ss_pred -CCcee
Confidence 44554
No 377
>PRK01372 ddl D-alanine--D-alanine ligase; Reviewed
Probab=45.99 E-value=56 Score=27.73 Aligned_cols=40 Identities=15% Similarity=0.202 Sum_probs=29.8
Q ss_pred HHHHHHHHHhhcCCEEEEECCHHHHHHHhhhhhhhhccCCCCCcccEEEEc
Q 026776 41 DRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITD 91 (233)
Q Consensus 41 ~~~~l~~~L~~~g~~v~~a~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD 91 (233)
....+.+.|++.|+++.......+.++.+ ....+|+||.-
T Consensus 24 s~~~i~~al~~~g~~v~~i~~~~~~~~~~-----------~~~~~D~v~~~ 63 (304)
T PRK01372 24 SGAAVLAALREAGYDAHPIDPGEDIAAQL-----------KELGFDRVFNA 63 (304)
T ss_pred hHHHHHHHHHHCCCEEEEEecCcchHHHh-----------ccCCCCEEEEe
Confidence 45677888899999999887666666665 34568999864
No 378
>cd06273 PBP1_GntR_like_1 This group includes the ligand-binding domain of putative DNA transcription repressors which are highly similar to that of the repressor specific for gluconate (GntR), a member of the LacI-GalR family of bacterial transcription regulators. This group includes the ligand-binding domain of putative DNA transcription repressors which are highly similar to that of the repressor specific for gluconate (GntR), a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational
Probab=45.97 E-value=1.4e+02 Score=24.21 Aligned_cols=9 Identities=0% Similarity=-0.119 Sum_probs=4.1
Q ss_pred HHHHHHHhc
Q 026776 100 YELLKKIKD 108 (233)
Q Consensus 100 ~~ll~~Lr~ 108 (233)
..+.+.|.+
T Consensus 105 ~~~~~~l~~ 113 (268)
T cd06273 105 RLAARHLIA 113 (268)
T ss_pred HHHHHHHHH
Confidence 344444544
No 379
>TIGR03765 ICE_PFL_4695 integrating conjugative element protein, PFL_4695 family. This model describes a protein family exemplified by PFL_4695 of Pseudomonas fluorescens Pf-5. Full-length proteins in this family show some architectural variety, but this model represents a conserved domain. Most or all member proteins belong to laterally transferred chromosomal islands called integrative conjugative elements, or ICE.
Probab=45.91 E-value=1.1e+02 Score=22.11 Aligned_cols=69 Identities=20% Similarity=0.260 Sum_probs=42.3
Q ss_pred EEEEEeCCHHHHHHHHHHH---hhcCC--EEEEECCHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCCCCCHHHHHHH
Q 026776 31 HVLAVDDSFVDRKVIERLL---TISSC--KVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKK 105 (233)
Q Consensus 31 ~ILIVddd~~~~~~l~~~L---~~~g~--~v~~a~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp~~~g~~ll~~ 105 (233)
-+.+|.||+..+..+++-- ++.+- -|+-+.+ .++++.++ ..-+. +.|--.+|.++.++
T Consensus 26 p~FlIGdD~~S~~WL~~~~~~L~~l~AvGlVVnV~t-~~~l~~Lr-----------~lapg-----l~l~P~sgddLa~r 88 (105)
T TIGR03765 26 PLFLIGDDPASRQWLQQNAAALKSLGAVGLVVNVET-AAALQRLR-----------ALAPG-----LPLLPVSGDDLAER 88 (105)
T ss_pred ceEEEeCCHHHHHHHHHHHHHHHHCCCeEEEEecCC-HHHHHHHH-----------HHcCC-----CcccCCCHHHHHHH
Confidence 4899999999999997664 44432 1333444 34555552 11233 34456789999999
Q ss_pred HhccCCCCCCcEEEE
Q 026776 106 IKDSSALREIPVVIM 120 (233)
Q Consensus 106 Lr~~~~~~~~piIvl 120 (233)
|.-. .-|+++.
T Consensus 89 L~l~----hYPvLit 99 (105)
T TIGR03765 89 LGLR----HYPVLIT 99 (105)
T ss_pred hCCC----cccEEEe
Confidence 9543 5577654
No 380
>cd08556 GDPD Glycerophosphodiester phosphodiesterase domain as found in prokaryota and eukaryota, and similar proteins. The typical glycerophosphodiester phosphodiesterase domain (GDPD) consists of a TIM barrel and a small insertion domain named the GDPD-insertion (GDPD-I) domain, which is specific for GDPD proteins. This family corresponds to both typical GDPD domain and GDPD-like domain which lacks the GDPD-I region. Members in this family mainly consist of a large family of prokaryotic and eukaryotic glycerophosphodiester phosphodiesterases (GP-GDEs, EC 3.1.4.46), and a number of uncharacterized homologs. Sphingomyelinases D (SMases D) (sphingomyelin phosphodiesterase D, EC 3.1.4.41) from spider venom, SMases D-like proteins, and phospholipase D (PLD) from several pathogenic bacteria are also included in this family. GDPD plays an essential role in glycerol metabolism and catalyzes the hydrolysis of glycerophosphodiesters to sn-glycerol-3-phosphate (G3P) and the corresponding alcoho
Probab=45.73 E-value=1.4e+02 Score=22.98 Aligned_cols=39 Identities=18% Similarity=0.220 Sum_probs=28.5
Q ss_pred HHHHHHHHhccCCCCCCcEEEEeCCCcHHHHHHHHHcCCceEEe
Q 026776 99 GYELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIV 142 (233)
Q Consensus 99 g~~ll~~Lr~~~~~~~~piIvlt~~~~~~~~~~al~~Ga~dyL~ 142 (233)
+-.+++.+++. .+++.+.|-+ +.+....+++.|++++++
T Consensus 149 ~~~~i~~~~~~----g~~v~~wtvn-~~~~~~~~~~~GVdgI~T 187 (189)
T cd08556 149 TPELVRAAHAA----GLKVYVWTVN-DPEDARRLLALGVDGIIT 187 (189)
T ss_pred CHHHHHHHHHc----CCEEEEEcCC-CHHHHHHHHHCCCCEEec
Confidence 35677777764 6677777764 466777889999998875
No 381
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=45.67 E-value=72 Score=27.18 Aligned_cols=7 Identities=57% Similarity=0.852 Sum_probs=3.7
Q ss_pred ccEEEEc
Q 026776 85 VDLIITD 91 (233)
Q Consensus 85 ~DlvllD 91 (233)
+|+||+|
T Consensus 273 ~d~vliD 279 (282)
T TIGR03499 273 KDLILID 279 (282)
T ss_pred CCEEEEe
Confidence 4555555
No 382
>cd01833 XynB_like SGNH_hydrolase subfamily, similar to Ruminococcus flavefaciens XynB. Most likely a secreted hydrolase with xylanase activity. SGNH hydrolases are a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=45.63 E-value=16 Score=27.49 Aligned_cols=40 Identities=8% Similarity=0.257 Sum_probs=24.8
Q ss_pred CCCcccEEEEcCCCCCCC-----------HHHHHHHHhccCCCCCCcEEEEeC
Q 026776 81 DGLKVDLIITDYCMPGMT-----------GYELLKKIKDSSALREIPVVIMSS 122 (233)
Q Consensus 81 ~~~~~DlvllD~~mp~~~-----------g~~ll~~Lr~~~~~~~~piIvlt~ 122 (233)
...+||+|++-+...+.. --++++.+++..+ ..++++++.
T Consensus 37 ~~~~pd~vvi~~G~ND~~~~~~~~~~~~~~~~~i~~i~~~~p--~~~ii~~~~ 87 (157)
T cd01833 37 LAAKPDVVLLHLGTNDLVLNRDPDTAPDRLRALIDQMRAANP--DVKIIVATL 87 (157)
T ss_pred ccCCCCEEEEeccCcccccCCCHHHHHHHHHHHHHHHHHhCC--CeEEEEEeC
Confidence 456899999966554431 1246677776544 666776653
No 383
>PRK15490 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=45.60 E-value=2.8e+02 Score=26.51 Aligned_cols=59 Identities=14% Similarity=0.228 Sum_probs=38.0
Q ss_pred ccEEEEcCCCCCCCHHHHHHHHhccCCCCCCcEEEEeCCCcHHHHHHHHHcCCceEEeCCCCHHHHHHH
Q 026776 85 VDLIITDYCMPGMTGYELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVKLSDVKRI 153 (233)
Q Consensus 85 ~DlvllD~~mp~~~g~~ll~~Lr~~~~~~~~piIvlt~~~~~~~~~~al~~Ga~dyL~KP~~~~eL~~~ 153 (233)
.|+.++=. ..+.-|..+++.+.. .+|+|.....+. .+.+..|.++|+.++.+...+...
T Consensus 473 ADVfVlPS-~~EGfp~vlLEAMA~-----GlPVVATdvGG~----~EiV~dG~nG~LVp~~D~~aLa~a 531 (578)
T PRK15490 473 MNVFILFS-RYEGLPNVLIEAQMV-----GVPVISTPAGGS----AECFIEGVSGFILDDAQTVNLDQA 531 (578)
T ss_pred CCEEEEcc-cccCccHHHHHHHHh-----CCCEEEeCCCCc----HHHcccCCcEEEECCCChhhHHHH
Confidence 57776632 234456777777653 778885443332 345668999999999887666443
No 384
>PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=45.58 E-value=1.3e+02 Score=25.18 Aligned_cols=54 Identities=20% Similarity=0.386 Sum_probs=39.5
Q ss_pred cEEEEcCCCCCC---CHHHHHHHHhccCCCCCCcEEEEeCCCcHHHHHHHH-HcCCceEEe
Q 026776 86 DLIITDYCMPGM---TGYELLKKIKDSSALREIPVVIMSSENILARIDRCL-EDGAEDFIV 142 (233)
Q Consensus 86 DlvllD~~mp~~---~g~~ll~~Lr~~~~~~~~piIvlt~~~~~~~~~~al-~~Ga~dyL~ 142 (233)
.+++.|+.--++ -.+++++.+++. ..+|+|+-.+-.+.+...+++ ..|+++.+.
T Consensus 168 ~ii~~~i~~~G~~~G~d~~~i~~~~~~---~~ipvIasGGv~s~eD~~~l~~~~GvdgViv 225 (258)
T PRK01033 168 EILLNSIDRDGTMKGYDLELLKSFRNA---LKIPLIALGGAGSLDDIVEAILNLGADAAAA 225 (258)
T ss_pred EEEEEccCCCCCcCCCCHHHHHHHHhh---CCCCEEEeCCCCCHHHHHHHHHHCCCCEEEE
Confidence 377777753321 246778888865 278999888888889999998 799988754
No 385
>PRK10538 malonic semialdehyde reductase; Provisional
Probab=45.57 E-value=1.3e+02 Score=24.31 Aligned_cols=35 Identities=20% Similarity=0.123 Sum_probs=27.0
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhcCCEEEEECCHHH
Q 026776 30 VHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRR 64 (233)
Q Consensus 30 ~~ILIVddd~~~~~~l~~~L~~~g~~v~~a~~~~~ 64 (233)
++|+|..........+.+.|.+.|++|.......+
T Consensus 1 ~~vlItGasg~iG~~la~~l~~~G~~V~~~~r~~~ 35 (248)
T PRK10538 1 MIVLVTGATAGFGECITRRFIQQGHKVIATGRRQE 35 (248)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEECCHH
Confidence 46888888888888888888888998877654333
No 386
>PRK07455 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=45.52 E-value=1.5e+02 Score=23.52 Aligned_cols=65 Identities=12% Similarity=0.178 Sum_probs=44.2
Q ss_pred ECCHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCCC--CCHHHHHHHHhccCCCCCCcEEEEeCCCcHHHHHHHHHcC
Q 026776 59 VDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPG--MTGYELLKKIKDSSALREIPVVIMSSENILARIDRCLEDG 136 (233)
Q Consensus 59 a~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp~--~~g~~ll~~Lr~~~~~~~~piIvlt~~~~~~~~~~al~~G 136 (233)
+.+..++.+.. ...+|.|-+ .|. .-|.+.++.++...+ .+|++.+.+ -+.+.+.+++++|
T Consensus 112 ~~t~~e~~~A~------------~~Gadyv~~---Fpt~~~~G~~~l~~~~~~~~--~ipvvaiGG-I~~~n~~~~l~aG 173 (187)
T PRK07455 112 ALTPTEIVTAW------------QAGASCVKV---FPVQAVGGADYIKSLQGPLG--HIPLIPTGG-VTLENAQAFIQAG 173 (187)
T ss_pred cCCHHHHHHHH------------HCCCCEEEE---CcCCcccCHHHHHHHHhhCC--CCcEEEeCC-CCHHHHHHHHHCC
Confidence 45666665544 234677765 343 458999999987543 789887754 4567788899999
Q ss_pred CceEE
Q 026776 137 AEDFI 141 (233)
Q Consensus 137 a~dyL 141 (233)
++.+-
T Consensus 174 a~~va 178 (187)
T PRK07455 174 AIAVG 178 (187)
T ss_pred CeEEE
Confidence 98763
No 387
>PRK08535 translation initiation factor IF-2B subunit delta; Provisional
Probab=45.42 E-value=1.3e+02 Score=26.08 Aligned_cols=81 Identities=11% Similarity=0.171 Sum_probs=52.6
Q ss_pred CCCcEEEEEeCCHHHH-HHHHHHHhhcCCEEEEECCHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCC--CC-----CC
Q 026776 27 TEEVHVLAVDDSFVDR-KVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCM--PG-----MT 98 (233)
Q Consensus 27 ~~~~~ILIVddd~~~~-~~l~~~L~~~g~~v~~a~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~m--p~-----~~ 98 (233)
.++++|.+.|..|... ..+...|.+.|+.++...+..-+.-+- ..|.||+..+. .+ .-
T Consensus 144 ~k~~~V~v~EsrP~~~G~~~a~~L~~~GI~vtlI~Dsav~~~m~--------------~vd~VivGAd~v~~nG~v~nki 209 (310)
T PRK08535 144 GKDIEVIATETRPRNQGHITAKELAEYGIPVTLIVDSAVRYFMK--------------DVDKVVVGADAITANGAVINKI 209 (310)
T ss_pred CCeEEEEEecCCchhhHHHHHHHHHHCCCCEEEEehhHHHHHHH--------------hCCEEEECccEEecCCCEEeHH
Confidence 3578999999887643 556777888999888887755443321 36888875432 22 34
Q ss_pred HHHHHHHHhccCCCCCCcEEEEeCCC
Q 026776 99 GYELLKKIKDSSALREIPVVIMSSEN 124 (233)
Q Consensus 99 g~~ll~~Lr~~~~~~~~piIvlt~~~ 124 (233)
|.-.+..+-+.. ++|+++++...
T Consensus 210 GT~~~A~~Ak~~---~vPv~V~a~~~ 232 (310)
T PRK08535 210 GTSQIALAAHEA---RVPFMVAAETY 232 (310)
T ss_pred hHHHHHHHHHHh---CCCEEEecccc
Confidence 555555553332 78999987654
No 388
>cd06355 PBP1_FmdD_like Periplasmic component (FmdD) of an active transport system for short-chain amides and urea (FmdDEF). This group includes the periplasmic component (FmdD) of an active transport system for short-chain amides and urea (FmdDEF), found in Methylophilus methylotrophus, and its homologs from other bacteria. FmdD, a type I periplasmic binding protein, is induced by short-chain amides and urea and repressed by excess ammonia, while FmdE and FmdF are hydrophobic transmembrane proteins. FmdDEF is predicted to be an ATP-dependent transporter and closely resembles the periplasmic binding protein and the two transmembrane proteins present in various hydrophobic amino acid-binding transport systems.
Probab=45.40 E-value=1.9e+02 Score=24.92 Aligned_cols=69 Identities=13% Similarity=0.228 Sum_probs=42.7
Q ss_pred cEEEEEeCC----HHHHHHHHHHHhhcCCEEEE---E----CCHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCCCCC
Q 026776 30 VHVLAVDDS----FVDRKVIERLLTISSCKVTA---V----DSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMT 98 (233)
Q Consensus 30 ~~ILIVddd----~~~~~~l~~~L~~~g~~v~~---a----~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp~~~ 98 (233)
-+|.++-++ ....+.++..++..|.+++. . .+....+..+ ....+|+|++- ..+.+
T Consensus 134 k~vaii~~d~~~g~~~~~~~~~~~~~~G~~vv~~~~~~~~~~D~~~~v~~l-----------~~~~pd~v~~~--~~~~~ 200 (348)
T cd06355 134 KRFYLVGSDYVYPRTANKILKAQLESLGGEVVGEEYLPLGHTDFQSIINKI-----------KAAKPDVVVST--VNGDS 200 (348)
T ss_pred CeEEEECCcchHHHHHHHHHHHHHHHcCCeEEeeEEecCChhhHHHHHHHH-----------HHhCCCEEEEe--ccCCc
Confidence 345555433 24445566677888877654 2 2334444444 34578999873 34556
Q ss_pred HHHHHHHHhccCC
Q 026776 99 GYELLKKIKDSSA 111 (233)
Q Consensus 99 g~~ll~~Lr~~~~ 111 (233)
...+++.+++...
T Consensus 201 ~~~~~~~~~~~G~ 213 (348)
T cd06355 201 NVAFFKQLKAAGI 213 (348)
T ss_pred hHHHHHHHHHcCC
Confidence 7889999998764
No 389
>cd01568 QPRTase_NadC Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=45.40 E-value=1.1e+02 Score=25.95 Aligned_cols=55 Identities=18% Similarity=0.284 Sum_probs=40.0
Q ss_pred HHHHHHhccCCCCCCcEEEEeCCCcHHHHHHHHHcCCceEEeCCCCHHHHHHHHHHHh
Q 026776 101 ELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVKLSDVKRIKDYLT 158 (233)
Q Consensus 101 ~ll~~Lr~~~~~~~~piIvlt~~~~~~~~~~al~~Ga~dyL~KP~~~~eL~~~~~~l~ 158 (233)
..++.+|+..+ ....|.+..+ +.+++.+++..|+|.+..-|+.++.+.+++..+.
T Consensus 169 ~~v~~~r~~~~--~~~~I~vev~-t~eea~~A~~~gaD~I~ld~~~~e~l~~~v~~i~ 223 (269)
T cd01568 169 EAVKRARAAAP--FEKKIEVEVE-TLEEAEEALEAGADIIMLDNMSPEELKEAVKLLK 223 (269)
T ss_pred HHHHHHHHhCC--CCCeEEEecC-CHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHhc
Confidence 35677777543 2334556554 4577888999999999999999999988776653
No 390
>cd00384 ALAD_PBGS Porphobilinogen synthase (PBGS), which is also called delta-aminolevulinic acid dehydratase (ALAD), catalyzes the condensation of two 5-aminolevulinic acid (ALA) molecules to form the pyrrole porphobilinogen (PBG), which is the second step in the biosynthesis of tetrapyrroles, such as heme, vitamin B12 and chlorophyll. This reaction involves the formation of a Schiff base link between the substrate and the enzyme. PBGSs are metalloenzymes, some of which have a second, allosteric metal binding site, beside the metal ion binding site in their active site. Although PBGS is a family of homologous enzymes, its metal ion utilization at catalytic site varies between zinc and magnesium and/or potassium. PBGS can be classified into two groups based on differences in their active site metal binding site. They either contain a cysteine-rich zinc binding site (consensus DXCXCX(Y/F)X3G(H/Q)CG) or an aspartate-rich magnesium binding site (consensus DXALDX(Y/F)X3G(H/Q)DG). The cyste
Probab=45.39 E-value=88 Score=27.26 Aligned_cols=64 Identities=19% Similarity=0.367 Sum_probs=46.3
Q ss_pred CHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCCCCCHHHHHHHHhccCCCCCCcEEEEeCCCcHHHHHHHHHcCCc
Q 026776 61 SGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAE 138 (233)
Q Consensus 61 ~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp~~~g~~ll~~Lr~~~~~~~~piIvlt~~~~~~~~~~al~~Ga~ 138 (233)
|..||+..+..+- .+..|+|++- |++-=+++++.+++.. .+|+.++--++....+..|.+.|..
T Consensus 218 n~~eAlre~~~D~--------~EGAD~lMVK---Pal~YLDIi~~~k~~~---~~PvaaYqVSGEYaMikaAa~~G~i 281 (314)
T cd00384 218 NRREALREVELDI--------EEGADILMVK---PALAYLDIIRDVRERF---DLPVAAYNVSGEYAMIKAAAKNGWI 281 (314)
T ss_pred CHHHHHHHHHhhH--------HhCCCEEEEc---CCchHHHHHHHHHHhc---CCCEEEEEccHHHHHHHHHHHcCCc
Confidence 5667776665442 3357999886 7777889999999864 7899998777766666667666644
No 391
>PRK01581 speE spermidine synthase; Validated
Probab=45.37 E-value=2.1e+02 Score=25.75 Aligned_cols=68 Identities=25% Similarity=0.202 Sum_probs=35.7
Q ss_pred cEEEEEeCCHHHHHHHHHH--Hh---hc---CCEEE-EECCHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCCCC---
Q 026776 30 VHVLAVDDSFVDRKVIERL--LT---IS---SCKVT-AVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGM--- 97 (233)
Q Consensus 30 ~~ILIVddd~~~~~~l~~~--L~---~~---g~~v~-~a~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp~~--- 97 (233)
.+|.+||=|+.+.+..+.+ |. .. +-++. ...|+.+.+... ...||+||+|+.-|..
T Consensus 175 ~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~------------~~~YDVIIvDl~DP~~~~~ 242 (374)
T PRK01581 175 LHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSP------------SSLYDVIIIDFPDPATELL 242 (374)
T ss_pred CeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhc------------CCCccEEEEcCCCccccch
Confidence 4577777777666665541 11 11 12332 245555544332 3469999999754422
Q ss_pred ---CHHHHHHHHhcc
Q 026776 98 ---TGYELLKKIKDS 109 (233)
Q Consensus 98 ---~g~~ll~~Lr~~ 109 (233)
-..++.+.++..
T Consensus 243 ~~LyT~EFy~~~~~~ 257 (374)
T PRK01581 243 STLYTSELFARIATF 257 (374)
T ss_pred hhhhHHHHHHHHHHh
Confidence 124566666553
No 392
>cd06326 PBP1_STKc_like Type I periplasmic binding domain of uncharacterized extracellular ligand-binding proteins. The type I periplasmic binding domain of uncharacterized extracellular ligand-binding proteins, some of which contain a conserved catalytic serine/threonine protein kinase (STKc) domain in the N-terminal region. Members of this group are sequence-similar to the branched-chain amino acid ABC transporter leucine-isoleucine-valine-binding protein (LIVBP); their ligand specificity has not been determined experimentally, however.
Probab=45.36 E-value=1.9e+02 Score=24.46 Aligned_cols=69 Identities=12% Similarity=0.056 Sum_probs=39.6
Q ss_pred HHHHHHHHhhcCCEEEE---E----CCHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCCCCCHHHHHHHHhccCCCCC
Q 026776 42 RKVIERLLTISSCKVTA---V----DSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKKIKDSSALRE 114 (233)
Q Consensus 42 ~~~l~~~L~~~g~~v~~---a----~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp~~~g~~ll~~Lr~~~~~~~ 114 (233)
...+++.+++.|..+.. + .+....+..+ ....+|+|++-.. +.....+++.+++... .
T Consensus 153 ~~~~~~~~~~~G~~~~~~~~~~~~~~d~~~~~~~l-----------~~~~~dav~~~~~--~~~a~~~i~~~~~~G~--~ 217 (336)
T cd06326 153 LAGVEKALAARGLKPVATASYERNTADVAAAVAQL-----------AAARPQAVIMVGA--YKAAAAFIRALRKAGG--G 217 (336)
T ss_pred HHHHHHHHHHcCCCeEEEEeecCCcccHHHHHHHH-----------HhcCCCEEEEEcC--cHHHHHHHHHHHhcCC--C
Confidence 34455566666654322 1 2444445444 2335798888542 2357788888887765 6
Q ss_pred CcEEEEeCCCc
Q 026776 115 IPVVIMSSENI 125 (233)
Q Consensus 115 ~piIvlt~~~~ 125 (233)
.+++.+.....
T Consensus 218 ~~~~~~~~~~~ 228 (336)
T cd06326 218 AQFYNLSFVGA 228 (336)
T ss_pred CcEEEEeccCH
Confidence 67666554433
No 393
>COG0352 ThiE Thiamine monophosphate synthase [Coenzyme metabolism]
Probab=45.34 E-value=1.7e+02 Score=23.97 Aligned_cols=68 Identities=28% Similarity=0.342 Sum_probs=49.2
Q ss_pred ECCHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCC-------CCCHHHHHHHHhccCCCCCCcEEEEeCCCcHHHHHH
Q 026776 59 VDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMP-------GMTGYELLKKIKDSSALREIPVVIMSSENILARIDR 131 (233)
Q Consensus 59 a~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp-------~~~g~~ll~~Lr~~~~~~~~piIvlt~~~~~~~~~~ 131 (233)
+.+.+++.+.. ...+|.|.+.--.| ...|++.++++++.. .+|++++.+- +.+.+.+
T Consensus 111 ~h~~eea~~A~------------~~g~DYv~~GpifpT~tK~~~~~~G~~~l~~~~~~~---~iP~vAIGGi-~~~nv~~ 174 (211)
T COG0352 111 THDLEEALEAE------------ELGADYVGLGPIFPTSTKPDAPPLGLEGLREIRELV---NIPVVAIGGI-NLENVPE 174 (211)
T ss_pred cCCHHHHHHHH------------hcCCCEEEECCcCCCCCCCCCCccCHHHHHHHHHhC---CCCEEEEcCC-CHHHHHH
Confidence 34666776654 23488888876444 356999999998764 5899888664 5677889
Q ss_pred HHHcCCceEEe
Q 026776 132 CLEDGAEDFIV 142 (233)
Q Consensus 132 al~~Ga~dyL~ 142 (233)
.++.|+++.-.
T Consensus 175 v~~~Ga~gVAv 185 (211)
T COG0352 175 VLEAGADGVAV 185 (211)
T ss_pred HHHhCCCeEEe
Confidence 99999998743
No 394
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=45.34 E-value=2.1e+02 Score=24.96 Aligned_cols=12 Identities=25% Similarity=0.454 Sum_probs=9.7
Q ss_pred CCcccEEEEcCC
Q 026776 82 GLKVDLIITDYC 93 (233)
Q Consensus 82 ~~~~DlvllD~~ 93 (233)
...+|+||+|..
T Consensus 194 ~~~~D~ViIDTa 205 (318)
T PRK10416 194 ARGIDVLIIDTA 205 (318)
T ss_pred hCCCCEEEEeCC
Confidence 356899999974
No 395
>cd08176 LPO Lactadehyde:propanediol oxidoreductase (LPO) catalyzes the interconversion between L-lactaldehyde and L-1,2-propanediol in Escherichia coli and other enterobacteria. Lactadehyde:propanediol oxidoreductase (LPO) is a member of the group III iron-activated dehydrogenases which catalyze the interconversion between L-lactaldehyde and L-1,2-propanediol in Escherichia coli and other enterobacteria. L-Fucose and L-rhamnose is used by Escherichia coli through an inducible pathway mediated by the fucose regulon comprising four linked oeprons fucO, fucA, fucPIK, and fucR. The fucA-encoded aldolase catalyzes the formation of dihydroxyacetone phosphate and L-lactaldehyde. Under anaerobic conditions, with NADH as a cofactor, lactaldehyde is converted by a fucO-encoded Lactadehyde:propanediol oxidoreductase (LPO) to L-1,2-propanediol, which is excreted as a fermentation product. In mutant strains, E. coli adapted to grow on L-1,2-propanediol, FucO catalyzes the oxidation of the polyol to
Probab=45.14 E-value=1.8e+02 Score=25.80 Aligned_cols=63 Identities=19% Similarity=0.193 Sum_probs=39.1
Q ss_pred cEEEEEeCCHHH----HHHHHHHHhhcCCEEEEECC---------HHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCCC
Q 026776 30 VHVLAVDDSFVD----RKVIERLLTISSCKVTAVDS---------GRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPG 96 (233)
Q Consensus 30 ~~ILIVddd~~~----~~~l~~~L~~~g~~v~~a~~---------~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp~ 96 (233)
-++|||.|.... ...+...|+..|..+..+.. ..++.+.+ +...+|+||- +.+
T Consensus 29 ~~~lvv~~~~~~~~~~~~~v~~~L~~~~~~~~~f~~v~~~p~~~~v~~~~~~~-----------~~~~~D~IIa---vGG 94 (377)
T cd08176 29 KKALIVTDKGLVKIGVVEKVTDVLDEAGIDYVIYDGVKPNPTITNVKDGLAVF-----------KKEGCDFIIS---IGG 94 (377)
T ss_pred CeEEEECCchHhhcCcHHHHHHHHHHcCCeEEEeCCCCCCCCHHHHHHHHHHH-----------HhcCCCEEEE---eCC
Confidence 378999776442 34567778877876666532 22333333 4457898883 456
Q ss_pred CCHHHHHHHH
Q 026776 97 MTGYELLKKI 106 (233)
Q Consensus 97 ~~g~~ll~~L 106 (233)
.+-+++.+.+
T Consensus 95 GS~iD~aK~i 104 (377)
T cd08176 95 GSPHDCAKAI 104 (377)
T ss_pred cHHHHHHHHH
Confidence 6667766655
No 396
>PRK08072 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=45.00 E-value=1e+02 Score=26.46 Aligned_cols=70 Identities=6% Similarity=0.134 Sum_probs=46.4
Q ss_pred ccEEEEcC-CCCCCC-HHHHHHHHhccCCCCCCcEEEEeCCCcHHHHHHHHHcCCceEEeCCCCHHHHHHHHHHH
Q 026776 85 VDLIITDY-CMPGMT-GYELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVKLSDVKRIKDYL 157 (233)
Q Consensus 85 ~DlvllD~-~mp~~~-g~~ll~~Lr~~~~~~~~piIvlt~~~~~~~~~~al~~Ga~dyL~KP~~~~eL~~~~~~l 157 (233)
.|.|++.- +.--.. -.+.++.+|+..+ ...+|.++.+. .+++.++.+.|+|.....++.++.+.+++..+
T Consensus 158 ~d~vlikdnHi~~~g~~~~~v~~aR~~~~--~~~~Igvsv~t-leea~~A~~~gaDyI~lD~~~~e~l~~~~~~~ 229 (277)
T PRK08072 158 YDGVMIKDNHIAFCGSITKAVTSVREKLG--HMVKIEVETET-EEQVREAVAAGADIIMFDNRTPDEIREFVKLV 229 (277)
T ss_pred CceEEEchhHHHhhCCHHHHHHHHHHhCC--CCCEEEEEeCC-HHHHHHHHHcCCCEEEECCCCHHHHHHHHHhc
Confidence 45566533 222222 2455666776543 34567777764 56677889999999999999999998877654
No 397
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=44.98 E-value=2.1e+02 Score=24.95 Aligned_cols=29 Identities=21% Similarity=0.373 Sum_probs=23.8
Q ss_pred CCcEEEEeCCCcHHHHHHHHHcCCceEEe
Q 026776 114 EIPVVIMSSENILARIDRCLEDGAEDFIV 142 (233)
Q Consensus 114 ~~piIvlt~~~~~~~~~~al~~Ga~dyL~ 142 (233)
.+|||.--+-.+...+.+++.+||+.+..
T Consensus 197 ~vpVIA~GGI~~~~di~kAla~GA~~Vmi 225 (325)
T cd00381 197 GVPVIADGGIRTSGDIVKALAAGADAVML 225 (325)
T ss_pred CCcEEecCCCCCHHHHHHHHHcCCCEEEe
Confidence 57887655666788999999999999876
No 398
>PF04309 G3P_antiterm: Glycerol-3-phosphate responsive antiterminator; InterPro: IPR006699 Glycerol enters bacterial cells via facilitated diffusion, an energy-independent transport process catalysed by the glycerol transport facilitator GlpF, an integral membrane protein of the aquaporin family. Intracellular glycerol is usually converted to glycerol-3-P in an ATP-requiring phosphorylation reaction catalysed by glycerol kinase (GlpK). Glycerol-3-P, the inducer of the glpFK operon, is not a substrate for GlpF and hence remains entrapped in the cell where it is metabolized further. In some bacterial species, for example Bacillus firmus, glycerol-3-P activates the antiterminator GlpP []. In B. subtilis, glpF and glpK are organised in an operon followed by the glycerol-3-P dehydrogenase-encoding glpD gene and preceded by glpP coding for an antiterminator regulating the expression of glpFK, glpD and glpTQ. Their induction requires the inducer glycerol-3-P, which activates the antiterminator GlpP by allowing it to bind to the leader region of glpD and presumably also of glpFK and glpTQ mRNAs.; GO: 0006355 regulation of transcription, DNA-dependent, 0009607 response to biotic stimulus; PDB: 1VKF_A 3KTS_G.
Probab=44.95 E-value=18 Score=28.78 Aligned_cols=54 Identities=22% Similarity=0.402 Sum_probs=35.3
Q ss_pred CCCcccEEEEcCCCCCCCHHHHHHHHhccCCCCCCcEEEEeCCCcHHHHHHHHHcCCceEE
Q 026776 81 DGLKVDLIITDYCMPGMTGYELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFI 141 (233)
Q Consensus 81 ~~~~~DlvllD~~mp~~~g~~ll~~Lr~~~~~~~~piIvlt~~~~~~~~~~al~~Ga~dyL 141 (233)
...+||+|=+ ||+ ---.+++++++. ..+|+|.=.=-.+.+++.+++++||.+.=
T Consensus 114 ~~~~PD~vEi---lPg-~~p~vi~~i~~~---~~~PiIAGGLI~~~e~v~~al~aGa~aVS 167 (175)
T PF04309_consen 114 EQSKPDAVEI---LPG-VMPKVIKKIREE---TNIPIIAGGLIRTKEDVEEALKAGADAVS 167 (175)
T ss_dssp HHHT-SEEEE---ESC-CHHHHHCCCCCC---CSS-EEEESS--SHHHHHHHCCTTCEEEE
T ss_pred hhcCCCEEEE---chH-HHHHHHHHHHHh---cCCCEEeecccCCHHHHHHHHHcCCEEEE
Confidence 3457898876 687 445666666653 26787755444678899999999998763
No 399
>PRK02155 ppnK NAD(+)/NADH kinase family protein; Provisional
Probab=44.95 E-value=2e+02 Score=24.70 Aligned_cols=106 Identities=16% Similarity=0.212 Sum_probs=54.5
Q ss_pred EEEEEe--CCHHH---HHHHHHHHhhcCCEEEEECCHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCCCCCHHHHHHH
Q 026776 31 HVLAVD--DSFVD---RKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKK 105 (233)
Q Consensus 31 ~ILIVd--dd~~~---~~~l~~~L~~~g~~v~~a~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp~~~g~~ll~~ 105 (233)
+|+|+- +.+.. ...+.+.|+..|+++.........+....... ..... ....+|+||+ -+.|| .+++.
T Consensus 7 ~v~iv~~~~~~~~~e~~~~i~~~L~~~g~~v~v~~~~~~~~~~~~~~~-~~~~~-~~~~~d~vi~----~GGDG-t~l~~ 79 (291)
T PRK02155 7 TVALIGRYQTPGIAEPLESLAAFLAKRGFEVVFEADTARNIGLTGYPA-LTPEE-IGARADLAVV----LGGDG-TMLGI 79 (291)
T ss_pred EEEEEecCCCHHHHHHHHHHHHHHHHCCCEEEEecchhhhcCcccccc-cChhH-hccCCCEEEE----ECCcH-HHHHH
Confidence 477763 33333 34455566777888776544322211100000 00000 1224788877 36676 45566
Q ss_pred HhccCCCCCCcEEEEeCCCcHHHHHHHHHcCCceEEeCCCCHHHHHHHHHHHh
Q 026776 106 IKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVKLSDVKRIKDYLT 158 (233)
Q Consensus 106 Lr~~~~~~~~piIvlt~~~~~~~~~~al~~Ga~dyL~KP~~~~eL~~~~~~l~ 158 (233)
++... ...+|++-+. .|=.+||. .+..+++...++.+.
T Consensus 80 ~~~~~-~~~~pilGIn-------------~G~lGFL~-~~~~~~~~~~l~~~~ 117 (291)
T PRK02155 80 GRQLA-PYGVPLIGIN-------------HGRLGFIT-DIPLDDMQETLPPML 117 (291)
T ss_pred HHHhc-CCCCCEEEEc-------------CCCccccc-cCCHHHHHHHHHHHH
Confidence 66532 2377888664 34445666 566677776666654
No 400
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=44.65 E-value=90 Score=26.05 Aligned_cols=56 Identities=16% Similarity=0.356 Sum_probs=41.4
Q ss_pred cEEEEcCCCCC---CCHHHHHHHHhccCCCCCCcEEEEeCCCcHHHHHHHHHcCCceEEeCC
Q 026776 86 DLIITDYCMPG---MTGYELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKP 144 (233)
Q Consensus 86 DlvllD~~mp~---~~g~~ll~~Lr~~~~~~~~piIvlt~~~~~~~~~~al~~Ga~dyL~KP 144 (233)
.+.+.|+.-.+ ...+++++.|++.- .+|+++-.+-.+.+.+.+++..|++..+.--
T Consensus 46 ~l~v~Dl~~~~~~~~~n~~~i~~i~~~~---~~pv~~~GGi~s~~d~~~~~~~Ga~~vivgt 104 (254)
T TIGR00735 46 ELVFLDITASSEGRTTMIDVVERTAETV---FIPLTVGGGIKSIEDVDKLLRAGADKVSINT 104 (254)
T ss_pred EEEEEcCCcccccChhhHHHHHHHHHhc---CCCEEEECCCCCHHHHHHHHHcCCCEEEECh
Confidence 46777876443 23466777777642 6889988888889999999999999887643
No 401
>KOG1203 consensus Predicted dehydrogenase [Carbohydrate transport and metabolism]
Probab=44.57 E-value=1.1e+02 Score=27.90 Aligned_cols=75 Identities=24% Similarity=0.270 Sum_probs=57.1
Q ss_pred CCCCCcEEEEEeCCHHHHHHHHHHHhhcCCEEEE-ECCHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCCCCCHHHHH
Q 026776 25 SDTEEVHVLAVDDSFVDRKVIERLLTISSCKVTA-VDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELL 103 (233)
Q Consensus 25 ~~~~~~~ILIVddd~~~~~~l~~~L~~~g~~v~~-a~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp~~~g~~ll 103 (233)
...+...||++.-.-.....+.+.|.+.||.|.. +.+.+.+.+.++ ....|..+-++......+.+.+
T Consensus 75 ~~~~~~~VlVvGatG~vG~~iv~~llkrgf~vra~VRd~~~a~~~~~-----------~~~~d~~~~~v~~~~~~~~d~~ 143 (411)
T KOG1203|consen 75 NSKKPTTVLVVGATGKVGRRIVKILLKRGFSVRALVRDEQKAEDLLG-----------VFFVDLGLQNVEADVVTAIDIL 143 (411)
T ss_pred CCCCCCeEEEecCCCchhHHHHHHHHHCCCeeeeeccChhhhhhhhc-----------ccccccccceeeeccccccchh
Confidence 3456788999999999999999999999998765 678888877762 2335666777777777777887
Q ss_pred HHHhccC
Q 026776 104 KKIKDSS 110 (233)
Q Consensus 104 ~~Lr~~~ 110 (233)
..+.+..
T Consensus 144 ~~~~~~~ 150 (411)
T KOG1203|consen 144 KKLVEAV 150 (411)
T ss_pred hhhhhhc
Confidence 7777654
No 402
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=44.45 E-value=87 Score=24.05 Aligned_cols=57 Identities=14% Similarity=0.034 Sum_probs=28.6
Q ss_pred CcEEEEEeCCHHHH---HHHHHHHhhcCCEEEEEC---CHHHHHH-HhhhhhhhhccCCCCCcccEEEEcCC
Q 026776 29 EVHVLAVDDSFVDR---KVIERLLTISSCKVTAVD---SGRRALQ-FLGLDEEQSINGFDGLKVDLIITDYC 93 (233)
Q Consensus 29 ~~~ILIVddd~~~~---~~l~~~L~~~g~~v~~a~---~~~~al~-~l~~~~~~~~~~~~~~~~DlvllD~~ 93 (233)
..+|++|+-|.... +.+..+....|..+.... +..+.+. .+.. .....+|+||+|..
T Consensus 28 g~~v~~i~~D~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~d~viiDt~ 91 (173)
T cd03115 28 GKKVLLVAADTYRPAAIEQLRVLGEQVGVPVFEEGEGKDPVSIAKRAIEH--------AREENFDVVIVDTA 91 (173)
T ss_pred CCcEEEEEcCCCChHHHHHHHHhcccCCeEEEecCCCCCHHHHHHHHHHH--------HHhCCCCEEEEECc
Confidence 46788888664322 223333445565554432 3332221 1110 02346899999974
No 403
>cd06343 PBP1_ABC_ligand_binding_like_8 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=44.32 E-value=2.1e+02 Score=24.66 Aligned_cols=57 Identities=11% Similarity=0.024 Sum_probs=35.8
Q ss_pred HHHHHHHHhhcCCEEEEE-------CCHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCCCCCHHHHHHHHhccCC
Q 026776 42 RKVIERLLTISSCKVTAV-------DSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKKIKDSSA 111 (233)
Q Consensus 42 ~~~l~~~L~~~g~~v~~a-------~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp~~~g~~ll~~Lr~~~~ 111 (233)
.+.+++.+++.|.++... .+....+..+ ....+|+|++-. ...+...+++.+++...
T Consensus 161 ~~~~~~~~~~~G~~vv~~~~~~~~~~d~~~~v~~i-----------~~~~~d~v~~~~--~~~~~~~~~~~~~~~g~ 224 (362)
T cd06343 161 LKGLKDGLGDAGLEIVAETSYEVTEPDFDSQVAKL-----------KAAGADVVVLAT--TPKFAAQAIRKAAELGW 224 (362)
T ss_pred HHHHHHHHHHcCCeEEEEeeecCCCccHHHHHHHH-----------HhcCCCEEEEEc--CcHHHHHHHHHHHHcCC
Confidence 344555566778765431 1344445555 345789999854 45568889999988754
No 404
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=44.29 E-value=91 Score=21.87 Aligned_cols=56 Identities=25% Similarity=0.176 Sum_probs=37.2
Q ss_pred CcEEEEEeCCHHHHHHHHHHHhhcCC--EE-EEECCHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCC
Q 026776 29 EVHVLAVDDSFVDRKVIERLLTISSC--KV-TAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMP 95 (233)
Q Consensus 29 ~~~ILIVddd~~~~~~l~~~L~~~g~--~v-~~a~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp 95 (233)
..++.-+|=++...+..+..+...+. .+ ....+..+..+.+ ...++|+|++|.-..
T Consensus 23 ~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~-----------~~~~~D~Iv~npP~~ 81 (117)
T PF13659_consen 23 AARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPEPL-----------PDGKFDLIVTNPPYG 81 (117)
T ss_dssp TCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHHTC-----------TTT-EEEEEE--STT
T ss_pred CCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchhhc-----------cCceeEEEEECCCCc
Confidence 36799999999999999988887654 23 3344555554333 456799999987544
No 405
>PRK14607 bifunctional glutamine amidotransferase/anthranilate phosphoribosyltransferase; Provisional
Probab=44.29 E-value=31 Score=32.42 Aligned_cols=75 Identities=13% Similarity=0.212 Sum_probs=44.9
Q ss_pred EEEEEeCCHHHHHHHHHHHhhcCCE-EEEECCHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCC--CCCCH--HHHHHH
Q 026776 31 HVLAVDDSFVDRKVIERLLTISSCK-VTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCM--PGMTG--YELLKK 105 (233)
Q Consensus 31 ~ILIVddd~~~~~~l~~~L~~~g~~-v~~a~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~m--p~~~g--~~ll~~ 105 (233)
+|||||....+-..+.++|++.|+. +........-++.+ ....||.||+.-.- |..++ .++++.
T Consensus 1 ~il~idn~dsft~nl~~~l~~~g~~~v~~~~~~~~~~~~~-----------~~~~~d~vIlsgGP~~p~~~~~~~~li~~ 69 (534)
T PRK14607 1 MIILIDNYDSFTYNIYQYIGELGPEEIEVVRNDEITIEEI-----------EALNPSHIVISPGPGRPEEAGISVEVIRH 69 (534)
T ss_pred CEEEEECchhHHHHHHHHHHHcCCCeEEEECCCCCCHHHH-----------HhcCCCEEEECCCCCChhhCCccHHHHHH
Confidence 3899999999999999999999985 66553221112222 22358888774321 11122 333333
Q ss_pred HhccCCCCCCcEEEEe
Q 026776 106 IKDSSALREIPVVIMS 121 (233)
Q Consensus 106 Lr~~~~~~~~piIvlt 121 (233)
+ . ...||+-+.
T Consensus 70 ~---~--~~~PvLGIC 80 (534)
T PRK14607 70 F---S--GKVPILGVC 80 (534)
T ss_pred h---h--cCCCEEEEc
Confidence 3 1 267888775
No 406
>TIGR01823 PabB-fungal aminodeoxychorismate synthase, fungal clade. This model represents the fungal clade of a para-aminobenzoate synthesis enzyme, aminodeoxychorismate synthase, which acts on chorismate in a pathway that yields PABA, a precursor of folate.
Probab=44.09 E-value=1.1e+02 Score=30.16 Aligned_cols=82 Identities=24% Similarity=0.300 Sum_probs=46.0
Q ss_pred CCCcEEEEEeCCHHHHHHHHHHHhhc-C--CEEEEECC--H-HHHHHHhhhhhhhhccCCCCCcccEEEEcCC--CCC-C
Q 026776 27 TEEVHVLAVDDSFVDRKVIERLLTIS-S--CKVTAVDS--G-RRALQFLGLDEEQSINGFDGLKVDLIITDYC--MPG-M 97 (233)
Q Consensus 27 ~~~~~ILIVddd~~~~~~l~~~L~~~-g--~~v~~a~~--~-~~al~~l~~~~~~~~~~~~~~~~DlvllD~~--mp~-~ 97 (233)
..+++|||||....+-..|..+|+.. | +.+..+.. . .+.+..+ ..||.||+--. -|. .
T Consensus 3 ~~~~~iL~ID~~DSft~nl~~~l~~~~g~~~~v~vv~~d~~~~~~~~~l-------------~~~D~VVIspGPG~p~~~ 69 (742)
T TIGR01823 3 QQRLHVLFIDSYDSFTYNVVRLLEQQTDISVHVTTVHSDTFQDQLLELL-------------PLFDAIVVGPGPGNPNNA 69 (742)
T ss_pred CCCceEEEEeCCcchHHHHHHHHHHhcCCCcEEEEEeCCCCchhhhhhh-------------cCCCEEEECCCCCCccch
Confidence 35789999999877777777788765 3 44444332 1 2222222 25788887422 111 1
Q ss_pred CHHHHHHHHhccCCCCCCcEEEEe
Q 026776 98 TGYELLKKIKDSSALREIPVVIMS 121 (233)
Q Consensus 98 ~g~~ll~~Lr~~~~~~~~piIvlt 121 (233)
.-..+++.+.+......+||+.+.
T Consensus 70 ~~~~i~~~i~~~~~~~~iPvLGIC 93 (742)
T TIGR01823 70 QDMGIISELWELANLDEVPVLGIC 93 (742)
T ss_pred hhhHHHHHHHHhcccCCCcEEEEc
Confidence 224466666553322257887765
No 407
>PRK11337 DNA-binding transcriptional repressor RpiR; Provisional
Probab=44.09 E-value=2e+02 Score=24.33 Aligned_cols=83 Identities=8% Similarity=0.003 Sum_probs=48.8
Q ss_pred EEEEeCCHHHHHHHHHHHhhcCCEEEEECCHHHHHHHhhhhhhhhccCCCCCcccEEEE-cCCCCCCCHHHHHHHHhccC
Q 026776 32 VLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIIT-DYCMPGMTGYELLKKIKDSS 110 (233)
Q Consensus 32 ILIVddd~~~~~~l~~~L~~~g~~v~~a~~~~~al~~l~~~~~~~~~~~~~~~~Dlvll-D~~mp~~~g~~ll~~Lr~~~ 110 (233)
|+=+.........+...|...|..+....+......... .-.+=|++|+ ...-...+-.++++..++.
T Consensus 145 i~G~G~S~~~A~~l~~~l~~~g~~~~~~~d~~~~~~~~~----------~~~~~Dl~I~iS~sG~t~~~~~~~~~ak~~- 213 (292)
T PRK11337 145 LYGAGGSAAIARDVQHKFLRIGVRCQAYDDAHIMLMSAA----------LLQEGDVVLVVSHSGRTSDVIEAVELAKKN- 213 (292)
T ss_pred EEEecHHHHHHHHHHHHHhhCCCeEEEcCCHHHHHHHHh----------cCCCCCEEEEEeCCCCCHHHHHHHHHHHHC-
Confidence 444445566666666667778888877776554432221 1123365444 3332234466777777765
Q ss_pred CCCCCcEEEEeCCCcHHH
Q 026776 111 ALREIPVVIMSSENILAR 128 (233)
Q Consensus 111 ~~~~~piIvlt~~~~~~~ 128 (233)
..++|++|+......
T Consensus 214 ---g~~ii~IT~~~~s~l 228 (292)
T PRK11337 214 ---GAKIICITNSYHSPI 228 (292)
T ss_pred ---CCeEEEEeCCCCChh
Confidence 679999998876543
No 408
>KOG0780 consensus Signal recognition particle, subunit Srp54 [Intracellular trafficking, secretion, and vesicular transport]
Probab=43.96 E-value=77 Score=28.81 Aligned_cols=29 Identities=24% Similarity=0.311 Sum_probs=19.9
Q ss_pred CCCCcccEEEEcCCCCCCCHHHHHHHHhc
Q 026776 80 FDGLKVDLIITDYCMPGMTGYELLKKIKD 108 (233)
Q Consensus 80 ~~~~~~DlvllD~~mp~~~g~~ll~~Lr~ 108 (233)
+....+|+||+|..=-.....++.+++++
T Consensus 179 fKke~fdvIIvDTSGRh~qe~sLfeEM~~ 207 (483)
T KOG0780|consen 179 FKKENFDVIIVDTSGRHKQEASLFEEMKQ 207 (483)
T ss_pred HHhcCCcEEEEeCCCchhhhHHHHHHHHH
Confidence 45678999999986554555556666654
No 409
>PRK05848 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=43.90 E-value=94 Score=26.55 Aligned_cols=55 Identities=13% Similarity=0.307 Sum_probs=40.6
Q ss_pred HHHHHHHhccCCCCCCcEEEEeCCCcHHHHHHHHHcCCceEEeCCCCHHHHHHHHHHH
Q 026776 100 YELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVKLSDVKRIKDYL 157 (233)
Q Consensus 100 ~~ll~~Lr~~~~~~~~piIvlt~~~~~~~~~~al~~Ga~dyL~KP~~~~eL~~~~~~l 157 (233)
.++++.+|...+. ..+|.+ .-.+.+++.+++++|+|-.+.--++++++.+++..+
T Consensus 169 ~~~v~~~k~~~p~-~~~I~V--Ev~tleea~~A~~~GaDiI~LDn~~~e~l~~~v~~~ 223 (273)
T PRK05848 169 KEFIQHARKNIPF-TAKIEI--ECESLEEAKNAMNAGADIVMCDNMSVEEIKEVVAYR 223 (273)
T ss_pred HHHHHHHHHhCCC-CceEEE--EeCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHh
Confidence 4677777765431 133333 445778889999999999999999999999888754
No 410
>cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue.
Probab=43.76 E-value=2.1e+02 Score=24.52 Aligned_cols=42 Identities=14% Similarity=0.129 Sum_probs=33.8
Q ss_pred HHHHHHHhccCCCCCCcEEEEeCCCcHHHHHHHHHcCCceEEe
Q 026776 100 YELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIV 142 (233)
Q Consensus 100 ~~ll~~Lr~~~~~~~~piIvlt~~~~~~~~~~al~~Ga~dyL~ 142 (233)
++.+.++++.-. ..+|||...+-.+.+++.+++.+||+.+..
T Consensus 239 l~~v~~~~~~~~-~~ipIig~GGI~~~~da~~~l~aGA~~V~i 280 (299)
T cd02940 239 LRAVSQIARAPE-PGLPISGIGGIESWEDAAEFLLLGASVVQV 280 (299)
T ss_pred HHHHHHHHHhcC-CCCcEEEECCCCCHHHHHHHHHcCCChheE
Confidence 677888876531 268999988888999999999999988754
No 411
>PRK03612 spermidine synthase; Provisional
Probab=43.67 E-value=1.6e+02 Score=27.51 Aligned_cols=68 Identities=25% Similarity=0.200 Sum_probs=37.9
Q ss_pred cEEEEEeCCHHHHHHHHH--HHhhc------CCEEE-EECCHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCCCCCH-
Q 026776 30 VHVLAVDDSFVDRKVIER--LLTIS------SCKVT-AVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTG- 99 (233)
Q Consensus 30 ~~ILIVddd~~~~~~l~~--~L~~~------g~~v~-~a~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp~~~g- 99 (233)
-+|.+||-|+...+..++ .+... +-++. ...|+.+.++.. ...||+|++|...|...+
T Consensus 322 ~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~------------~~~fDvIi~D~~~~~~~~~ 389 (521)
T PRK03612 322 EQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKL------------AEKFDVIIVDLPDPSNPAL 389 (521)
T ss_pred CeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhC------------CCCCCEEEEeCCCCCCcch
Confidence 467888888777777766 33221 11232 234554444322 347999999976554221
Q ss_pred -----HHHHHHHhcc
Q 026776 100 -----YELLKKIKDS 109 (233)
Q Consensus 100 -----~~ll~~Lr~~ 109 (233)
.++.+.+++.
T Consensus 390 ~~L~t~ef~~~~~~~ 404 (521)
T PRK03612 390 GKLYSVEFYRLLKRR 404 (521)
T ss_pred hccchHHHHHHHHHh
Confidence 2456666543
No 412
>PRK14330 (dimethylallyl)adenosine tRNA methylthiotransferase; Provisional
Probab=43.60 E-value=1.2e+02 Score=27.65 Aligned_cols=96 Identities=11% Similarity=0.132 Sum_probs=53.9
Q ss_pred CHHHHHHHHHHHhhcCCEEEEECCHHHHHHHhhhhhhhhccCCCCCcccEEEEcC----CCCCCCHHHHHHHHhccCCCC
Q 026776 38 SFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDY----CMPGMTGYELLKKIKDSSALR 113 (233)
Q Consensus 38 d~~~~~~l~~~L~~~g~~v~~a~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~----~mp~~~g~~ll~~Lr~~~~~~ 113 (233)
|....+.+...|...||+.... ....|+|++.. .......++.++.+......+
T Consensus 13 N~~ds~~~~~~l~~~g~~~~~~----------------------~~~aDlvvinTC~v~~~a~~~~~~~i~~~~~~~r~~ 70 (434)
T PRK14330 13 NENDSETMAGLLKKEGFEPASN----------------------PEEADVVIINTCAVRRKSEEKAYSELGQLLKLKRKK 70 (434)
T ss_pred cHHHHHHHHHHHHHCcCEECCC----------------------cccCCEEEEEccceeehHHHHHHHHHHHHHHhcccC
Confidence 5556677888888888865421 12479999962 112234566777773211112
Q ss_pred CCcEEEEeCCCcHHHHHHHHHcCCceEEeCCCCHHHHHHHHHHH
Q 026776 114 EIPVVIMSSENILARIDRCLEDGAEDFIVKPVKLSDVKRIKDYL 157 (233)
Q Consensus 114 ~~piIvlt~~~~~~~~~~al~~Ga~dyL~KP~~~~eL~~~~~~l 157 (233)
..+ |++++......-.++.+. .+|++.-+-....+..++..+
T Consensus 71 ~~~-vvv~Gc~a~~~~ee~~~~-~~d~vvg~~~~~~~~~~l~~~ 112 (434)
T PRK14330 71 NLI-IGVAGCVAEKEREKLLKR-GADFVIGTRAVPKVTEAVKRA 112 (434)
T ss_pred CCE-EEEECccccCchhhHHhc-CCcEEEcCCCHHHHHHHHHHH
Confidence 344 455554433333445555 566777776666666666554
No 413
>TIGR00078 nadC nicotinate-nucleotide pyrophosphorylase. Synonym: quinolinate phosphoribosyltransferase (decarboxylating)
Probab=43.54 E-value=1.3e+02 Score=25.45 Aligned_cols=54 Identities=17% Similarity=0.265 Sum_probs=39.4
Q ss_pred HHHHHHhccCCCCCCcEEEEeCCCcHHHHHHHHHcCCceEEeCCCCHHHHHHHHHHH
Q 026776 101 ELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVKLSDVKRIKDYL 157 (233)
Q Consensus 101 ~ll~~Lr~~~~~~~~piIvlt~~~~~~~~~~al~~Ga~dyL~KP~~~~eL~~~~~~l 157 (233)
..++.+|+..+ ....|.++.+ +.+++.++.+.|+|....-|+.++++.++++.+
T Consensus 166 ~av~~~r~~~~--~~~~Igvev~-t~eea~~A~~~gaDyI~ld~~~~e~lk~~v~~~ 219 (265)
T TIGR00078 166 KAVKRARAAAP--FALKIEVEVE-SLEEAEEAAEAGADIIMLDNMKPEEIKEAVQLL 219 (265)
T ss_pred HHHHHHHHhCC--CCCeEEEEeC-CHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHh
Confidence 45667776533 2345656555 456778899999998889999999998887765
No 414
>PRK05742 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=43.41 E-value=1.4e+02 Score=25.65 Aligned_cols=69 Identities=16% Similarity=0.273 Sum_probs=44.3
Q ss_pred ccEEEE-cCCCCCCCH-HHHHHHHhccCCCCCCcEEEEeCCCcHHHHHHHHHcCCceEEeCCCCHHHHHHHHHHH
Q 026776 85 VDLIIT-DYCMPGMTG-YELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVKLSDVKRIKDYL 157 (233)
Q Consensus 85 ~Dlvll-D~~mp~~~g-~~ll~~Lr~~~~~~~~piIvlt~~~~~~~~~~al~~Ga~dyL~KP~~~~eL~~~~~~l 157 (233)
.|.|++ |-++--..| ...++.+|+..+ ..+ |.+..+ +.+++.++++.|+|....-+++++++.++++.+
T Consensus 160 ~d~ilikdnHi~~~g~v~~av~~~r~~~~--~~~-I~VEv~-tleea~eA~~~gaD~I~LD~~~~e~l~~~v~~~ 230 (277)
T PRK05742 160 YDAFLIKENHIAACGGIAQAVAAAHRIAP--GKP-VEVEVE-SLDELRQALAAGADIVMLDELSLDDMREAVRLT 230 (277)
T ss_pred cccEEecHHHHHHhCCHHHHHHHHHHhCC--CCe-EEEEeC-CHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHh
Confidence 455554 333222333 345666666532 444 444443 467788999999999999999999998887654
No 415
>PRK08335 translation initiation factor IF-2B subunit alpha; Validated
Probab=43.37 E-value=1.6e+02 Score=25.28 Aligned_cols=81 Identities=10% Similarity=0.071 Sum_probs=50.0
Q ss_pred CCCcEEEEEeCCHHHH-HHHHHHHhhcCCEEEEECCHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCC--CC-----CC
Q 026776 27 TEEVHVLAVDDSFVDR-KVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCM--PG-----MT 98 (233)
Q Consensus 27 ~~~~~ILIVddd~~~~-~~l~~~L~~~g~~v~~a~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~m--p~-----~~ 98 (233)
.+.++|++.|..|... ..+...|.+.|..++...+..-+.-+- ..|.||+..+- .+ .-
T Consensus 133 gk~~~V~v~EsrP~~qG~~la~eL~~~GI~vtlI~Dsa~~~~m~--------------~vd~VivGAD~I~~nG~v~NKi 198 (275)
T PRK08335 133 GKRFKVILTESAPDYEGLALANELEFLGIEFEVITDAQLGLFAK--------------EATLALVGADNVTRDGYVVNKA 198 (275)
T ss_pred CCceEEEEecCCCchhHHHHHHHHHHCCCCEEEEeccHHHHHHH--------------hCCEEEECccEEecCCCEeehh
Confidence 4578999998887544 356788888999888877655443321 37888874432 22 23
Q ss_pred HHHHHHHHhccCCCCCCcEEEEeCCC
Q 026776 99 GYELLKKIKDSSALREIPVVIMSSEN 124 (233)
Q Consensus 99 g~~ll~~Lr~~~~~~~~piIvlt~~~ 124 (233)
|.-.+..+-+. .++|+++++...
T Consensus 199 GT~~lA~~Ak~---~~vPfyV~a~~~ 221 (275)
T PRK08335 199 GTYLLALACHD---NGVPFYVAAETF 221 (275)
T ss_pred hHHHHHHHHHH---cCCCEEEECccc
Confidence 44344444222 278898886543
No 416
>cd04951 GT1_WbdM_like This family is most closely related to the GT1 family of glycosyltransferases and is named after WbdM in Escherichia coli. In general glycosyltransferases catalyze the transfer of sugar moieties from activated donor molecules to specific acceptor molecules, forming glycosidic bonds. The acceptor molecule can be a lipid, a protein, a heterocyclic compound, or another carbohydrate residue. This group of glycosyltransferases is most closely related to the previously defined glycosyltransferase family 1 (GT1). The members of this family may transfer UDP, ADP, GDP, or CMP linked sugars. The diverse enzymatic activities among members of this family reflect a wide range of biological functions. The protein structure available for this family has the GTB topology, one of the two protein topologies observed for nucleotide-sugar-dependent glycosyltransferases. GTB proteins have distinct N- and C- terminal domains each containing a typical Rossmann fold. The two domains have
Probab=43.12 E-value=2e+02 Score=24.17 Aligned_cols=62 Identities=18% Similarity=0.206 Sum_probs=35.9
Q ss_pred ccEEEEcCCCCCCCHHHHHHHHhccCCCCCCcEEEEeCCCcHHHHHHHHHcCCceEEeCCCCHHHHHHHHHHHh
Q 026776 85 VDLIITDYCMPGMTGYELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVKLSDVKRIKDYLT 158 (233)
Q Consensus 85 ~DlvllD~~mp~~~g~~ll~~Lr~~~~~~~~piIvlt~~~~~~~~~~al~~Ga~dyL~KP~~~~eL~~~~~~l~ 158 (233)
.|++++-... +.-|..+++.+.. .+|+|+ +...... +.+.- .+++..+.+.+++.+.+..+.
T Consensus 263 ad~~v~~s~~-e~~~~~~~Ea~a~-----G~PvI~-~~~~~~~---e~i~~--~g~~~~~~~~~~~~~~i~~ll 324 (360)
T cd04951 263 ADLFVLSSAW-EGFGLVVAEAMAC-----ELPVVA-TDAGGVR---EVVGD--SGLIVPISDPEALANKIDEIL 324 (360)
T ss_pred hceEEecccc-cCCChHHHHHHHc-----CCCEEE-ecCCChh---hEecC--CceEeCCCCHHHHHHHHHHHH
Confidence 4666654332 2336667777653 667765 3322222 12221 567888999999887776664
No 417
>cd06318 PBP1_ABC_sugar_binding_like_9 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=43.12 E-value=1.7e+02 Score=23.97 Aligned_cols=62 Identities=15% Similarity=0.173 Sum_probs=34.5
Q ss_pred HHHHHHHhhcCCEEEEECC---HH---HHHHHhhhhhhhhccCCCCCcccEEEEcCCCCCCCH-HHHHHHHhccCCCCCC
Q 026776 43 KVIERLLTISSCKVTAVDS---GR---RALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTG-YELLKKIKDSSALREI 115 (233)
Q Consensus 43 ~~l~~~L~~~g~~v~~a~~---~~---~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp~~~g-~~ll~~Lr~~~~~~~~ 115 (233)
..+.+.+++.||++..... .+ +.++.+ ....+|.||+-. .+.+. .+.++.+++. .+
T Consensus 19 ~~i~~~~~~~g~~v~~~~~~~~~~~~~~~i~~~-----------~~~~~Dgiii~~--~~~~~~~~~i~~~~~~----~i 81 (282)
T cd06318 19 EAAKAHAKALGYELISTDAQGDLTKQIADVEDL-----------LTRGVNVLIINP--VDPEGLVPAVAAAKAA----GV 81 (282)
T ss_pred HHHHHHHHHcCCEEEEEcCCCCHHHHHHHHHHH-----------HHcCCCEEEEec--CCccchHHHHHHHHHC----CC
Confidence 3455566778998877543 22 233333 345689888742 12222 3556666543 56
Q ss_pred cEEEEe
Q 026776 116 PVVIMS 121 (233)
Q Consensus 116 piIvlt 121 (233)
|+|++-
T Consensus 82 PvV~~~ 87 (282)
T cd06318 82 PVVVVD 87 (282)
T ss_pred CEEEec
Confidence 777664
No 418
>PRK08385 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=43.07 E-value=1.2e+02 Score=25.95 Aligned_cols=65 Identities=15% Similarity=0.197 Sum_probs=45.0
Q ss_pred cCCCCCCCHHHHHHHHhccCCCCCCcEEEEeCCCcHHHHHHHHHcCCceEEeCCCCHHHHHHHHHHHhh
Q 026776 91 DYCMPGMTGYELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVKLSDVKRIKDYLTR 159 (233)
Q Consensus 91 D~~mp~~~g~~ll~~Lr~~~~~~~~piIvlt~~~~~~~~~~al~~Ga~dyL~KP~~~~eL~~~~~~l~~ 159 (233)
|-+.--.+-.+.++.+|...+ ..+|.+=. .+.+++.+++++|+|-.++--++++++.+++..+..
T Consensus 161 dnHi~~~~i~~av~~~r~~~~--~~kIeVEv--~~leea~~a~~agaDiI~LDn~~~e~l~~~v~~l~~ 225 (278)
T PRK08385 161 DNHLALVPLEEAIRRAKEFSV--YKVVEVEV--ESLEDALKAAKAGADIIMLDNMTPEEIREVIEALKR 225 (278)
T ss_pred cCHHHHHHHHHHHHHHHHhCC--CCcEEEEe--CCHHHHHHHHHcCcCEEEECCCCHHHHHHHHHHHHh
Confidence 444332323356677776544 45544433 467888899999999999999999999998887644
No 419
>PRK10867 signal recognition particle protein; Provisional
Probab=43.01 E-value=2e+02 Score=26.39 Aligned_cols=12 Identities=25% Similarity=0.304 Sum_probs=9.4
Q ss_pred CCcccEEEEcCC
Q 026776 82 GLKVDLIITDYC 93 (233)
Q Consensus 82 ~~~~DlvllD~~ 93 (233)
...+|+||+|..
T Consensus 181 ~~~~DvVIIDTa 192 (433)
T PRK10867 181 ENGYDVVIVDTA 192 (433)
T ss_pred hcCCCEEEEeCC
Confidence 346899999974
No 420
>cd06296 PBP1_CatR_like Ligand-binding domain of a LacI-like transcriptional regulator, CatR which is involved in catechol degradation. This group includes the ligand-binding domain of a LacI-like transcriptional regulator, CatR which is involved in catechol degradation. This group belongs to the the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=42.89 E-value=1.6e+02 Score=23.77 Aligned_cols=8 Identities=13% Similarity=0.509 Sum_probs=3.7
Q ss_pred ccEEEEcC
Q 026776 85 VDLIITDY 92 (233)
Q Consensus 85 ~DlvllD~ 92 (233)
.-+|++|-
T Consensus 79 ipvV~i~~ 86 (270)
T cd06296 79 IPFVVVDP 86 (270)
T ss_pred CCEEEEec
Confidence 34555543
No 421
>TIGR01334 modD putative molybdenum utilization protein ModD. The gene modD for a member of this family is found with molybdenum transport genes modABC in Rhodobacter capsulatus. However, disruption of modD causes only a 4-fold (rather than 500-fold for modA, modB, modC) change in the external molybdenum concentration required to suppress an alternative nitrogenase. ModD proteins are highly similar to nicotinate-nucleotide pyrophosphorylase (also called quinolinate phosphoribosyltransferase). The function unknown.
Probab=42.89 E-value=1.3e+02 Score=25.72 Aligned_cols=55 Identities=7% Similarity=0.197 Sum_probs=42.3
Q ss_pred HHHHHHHhccCCCCCCcEEEEeCCCcHHHHHHHHHcCCceEEeCCCCHHHHHHHHHHHh
Q 026776 100 YELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVKLSDVKRIKDYLT 158 (233)
Q Consensus 100 ~~ll~~Lr~~~~~~~~piIvlt~~~~~~~~~~al~~Ga~dyL~KP~~~~eL~~~~~~l~ 158 (233)
.+.++.+|+..+ ..+|.+=. .+.+++.+++++|+|-.+.--++++++.+++..+.
T Consensus 176 ~~av~~~r~~~~--~~kIeVEv--~tleea~ea~~~GaDiI~lDn~~~e~l~~~v~~l~ 230 (277)
T TIGR01334 176 GGAIGRLKQTAP--ERKITVEA--DTIEQALTVLQASPDILQLDKFTPQQLHHLHERLK 230 (277)
T ss_pred HHHHHHHHHhCC--CCCEEEEC--CCHHHHHHHHHcCcCEEEECCCCHHHHHHHHHHHh
Confidence 366777777544 44544433 46788899999999999999999999999888764
No 422
>COG1465 Predicted alternative 3-dehydroquinate synthase [Amino acid transport and metabolism]
Probab=42.72 E-value=1.1e+02 Score=26.57 Aligned_cols=55 Identities=11% Similarity=0.244 Sum_probs=38.3
Q ss_pred HHHHHHhccCCCCCCcEEEEeCCCc-HHHHHHHHHcCCceEEeCCCCHHHHHHHHHHHhh
Q 026776 101 ELLKKIKDSSALREIPVVIMSSENI-LARIDRCLEDGAEDFIVKPVKLSDVKRIKDYLTR 159 (233)
Q Consensus 101 ~ll~~Lr~~~~~~~~piIvlt~~~~-~~~~~~al~~Ga~dyL~KP~~~~eL~~~~~~l~~ 159 (233)
.++..+... .+.+|+-..+.. ...+.+-++.|+|++|+++-+++++.+....+.+
T Consensus 136 NlIA~l~~e----~~kliA~V~saeEA~vA~eTLE~GaDgVll~~~d~~eIk~~~~~~~e 191 (376)
T COG1465 136 NLIADLQHE----KVKLIAGVKSAEEARVALETLEKGADGVLLDSDDPEEIKKTAEVVEE 191 (376)
T ss_pred HHHHHhhcc----ceEEEEEeccHHHHHHHHHHHhccCceEEeCCCCHHHHHHHHHHHHH
Confidence 355555432 566666655543 3445677789999999999999999877766654
No 423
>PRK06559 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=42.67 E-value=1e+02 Score=26.60 Aligned_cols=56 Identities=11% Similarity=0.196 Sum_probs=41.7
Q ss_pred HHHHHHHhccCCCCCCcEEEEeCCCcHHHHHHHHHcCCceEEeCCCCHHHHHHHHHHHh
Q 026776 100 YELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVKLSDVKRIKDYLT 158 (233)
Q Consensus 100 ~~ll~~Lr~~~~~~~~piIvlt~~~~~~~~~~al~~Ga~dyL~KP~~~~eL~~~~~~l~ 158 (233)
.+.++.+|+..+. ..+|.+=. .+.+++.+++++|+|-.+.--++++++.+++..+.
T Consensus 184 ~~av~~~r~~~~~-~~kIeVEv--~tleea~~a~~agaDiImLDnmspe~l~~av~~~~ 239 (290)
T PRK06559 184 QKAIAQARAYAPF-VKMVEVEV--ESLAAAEEAAAAGADIIMLDNMSLEQIEQAITLIA 239 (290)
T ss_pred HHHHHHHHHhCCC-CCeEEEEC--CCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHhc
Confidence 4667777765431 23444333 56688899999999999999999999999887654
No 424
>cd02812 PcrB_like PcrB_like proteins. One member of this family, a protein from Archaeoglobus fulgidus, has been characterized as a (S)-3-O-geranylgeranylglyceryl phosphate synthase (AfGGGPS). AfGGGPS catalyzes the formation of an ether linkage between sn-glycerol-1-phosphate (G1P) and geranylgeranyl diphosphate (GGPP), the committed step in archaeal lipid biosynthesis. Therefore, it has been proposed that PcrB-like proteins are either prenyltransferases or are involved in lipoteichoic acid biosynthesis although the exact function is still unknown.
Probab=42.67 E-value=1.5e+02 Score=24.40 Aligned_cols=59 Identities=12% Similarity=0.228 Sum_probs=43.0
Q ss_pred ccEEEEcCCCCCCCHHHHHHHHhccCCCCCCcEEEEeCCCcHHHHHHHHHcCCceEEeCCCC
Q 026776 85 VDLIITDYCMPGMTGYELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVK 146 (233)
Q Consensus 85 ~DlvllD~~mp~~~g~~ll~~Lr~~~~~~~~piIvlt~~~~~~~~~~al~~Ga~dyL~KP~~ 146 (233)
..+|.+| .-......++++.+++... .+|+++=-+-.+.+.+.+++++||+.++.-..-
T Consensus 149 ~~ivyLe-~SG~~~~~e~I~~v~~~~~--~~pl~vGGGIrs~e~a~~l~~aGAD~VVVGsai 207 (219)
T cd02812 149 MPIVYLE-YSGAYGPPEVVRAVKKVLG--DTPLIVGGGIRSGEQAKEMAEAGADTIVVGNIV 207 (219)
T ss_pred CeEEEeC-CCCCcCCHHHHHHHHHhcC--CCCEEEeCCCCCHHHHHHHHHcCCCEEEECchh
Confidence 6788887 2222344788999987532 578887666678889999999999999887643
No 425
>cd06282 PBP1_GntR_like_2 Ligand-binding domain of putative DNA transcription repressors highly similar to that of the repressor specific for gluconate (GntR) which is a member of the LacI-GalR family of bacterial transcription regulators. This group includes the ligand-binding domain of putative DNA transcription repressors highly similar to that of the repressor specific for gluconate (GntR) which is a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding
Probab=42.54 E-value=1.7e+02 Score=23.58 Aligned_cols=10 Identities=0% Similarity=-0.057 Sum_probs=4.2
Q ss_pred HhhcCCEEEE
Q 026776 49 LTISSCKVTA 58 (233)
Q Consensus 49 L~~~g~~v~~ 58 (233)
++..|+.+..
T Consensus 25 ~~~~g~~~~~ 34 (266)
T cd06282 25 ARAAGYSLLL 34 (266)
T ss_pred HHHCCCEEEE
Confidence 3344444433
No 426
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=42.36 E-value=72 Score=26.27 Aligned_cols=54 Identities=19% Similarity=0.324 Sum_probs=39.3
Q ss_pred EEEEcCCCCC---CCHHHHHHHHhccCCCCCCcEEEEeCCCcHHHHHHHHHcCCceEEeC
Q 026776 87 LIITDYCMPG---MTGYELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVK 143 (233)
Q Consensus 87 lvllD~~mp~---~~g~~ll~~Lr~~~~~~~~piIvlt~~~~~~~~~~al~~Ga~dyL~K 143 (233)
++++|+.--+ ..-+++++++++.. .+|+++-.+-.+.+.+.+++..|++..+.-
T Consensus 44 i~i~d~~~~~~~~~~~~~~i~~i~~~~---~~pv~~~GGI~s~~d~~~~l~~G~~~v~ig 100 (243)
T cd04731 44 LVFLDITASSEGRETMLDVVERVAEEV---FIPLTVGGGIRSLEDARRLLRAGADKVSIN 100 (243)
T ss_pred EEEEcCCcccccCcccHHHHHHHHHhC---CCCEEEeCCCCCHHHHHHHHHcCCceEEEC
Confidence 6666766321 22367788887742 689998888788889999999998877654
No 427
>PLN02778 3,5-epimerase/4-reductase
Probab=42.28 E-value=1.3e+02 Score=25.70 Aligned_cols=33 Identities=6% Similarity=-0.014 Sum_probs=28.5
Q ss_pred CCCCcEEEEEeCCHHHHHHHHHHHhhcCCEEEE
Q 026776 26 DTEEVHVLAVDDSFVDRKVIERLLTISSCKVTA 58 (233)
Q Consensus 26 ~~~~~~ILIVddd~~~~~~l~~~L~~~g~~v~~ 58 (233)
...+++|||..-.-.....+.+.|...|++|..
T Consensus 6 ~~~~~kiLVtG~tGfiG~~l~~~L~~~g~~V~~ 38 (298)
T PLN02778 6 GSATLKFLIYGKTGWIGGLLGKLCQEQGIDFHY 38 (298)
T ss_pred CCCCCeEEEECCCCHHHHHHHHHHHhCCCEEEE
Confidence 345689999999999999999999989998864
No 428
>TIGR03669 urea_ABC_arch urea ABC transporter, substrate-binding protein, archaeal type. Members of this protein family are identified as the substrate-binding protein of a urea ABC transport system by similarity to a known urea transporter from Corynebacterium glutamicum, operon structure, proximity of its operons to urease (urea-utilization protein) operons, and by Partial Phylogenetic Profiling vs. urea utilization.
Probab=42.03 E-value=1.7e+02 Score=25.81 Aligned_cols=73 Identities=7% Similarity=0.187 Sum_probs=45.2
Q ss_pred EEEEEeCCHHHH----HHHHHHHhhcCCEEEE---E----CCHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCCCCCH
Q 026776 31 HVLAVDDSFVDR----KVIERLLTISSCKVTA---V----DSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTG 99 (233)
Q Consensus 31 ~ILIVddd~~~~----~~l~~~L~~~g~~v~~---a----~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp~~~g 99 (233)
++.++.++..+. ..++..+++.|.+++. + .+....+..+ ....||+|++- ..+.++
T Consensus 135 ~va~l~~d~~~g~~~~~~~~~~~~~~G~~vv~~~~~~~g~~Df~~~l~~i-----------~~~~pD~V~~~--~~g~~~ 201 (374)
T TIGR03669 135 KIYTIAADYNFGQLSADWVRVIAKENGAEVVGEEFIPLSVSQFSSTIQNI-----------QKADPDFVMSM--LVGANH 201 (374)
T ss_pred eEEEEcCCcHHHHHHHHHHHHHHHHcCCeEEeEEecCCCcchHHHHHHHH-----------HHcCCCEEEEc--CcCCcH
Confidence 565555443333 4556667778877643 2 2444455555 44579999973 345678
Q ss_pred HHHHHHHhccCCCCCCcEE
Q 026776 100 YELLKKIKDSSALREIPVV 118 (233)
Q Consensus 100 ~~ll~~Lr~~~~~~~~piI 118 (233)
..+++++++... ..+++
T Consensus 202 ~~~~kq~~~~G~--~~~~~ 218 (374)
T TIGR03669 202 ASFYEQAASANL--NLPMG 218 (374)
T ss_pred HHHHHHHHHcCC--CCccc
Confidence 889999988754 55554
No 429
>TIGR01859 fruc_bis_ald_ fructose-1,6-bisphosphate aldolase, class II, various bacterial and amitochondriate protist. This model represents of one of several subtypes of the class II fructose-1,6-bisphosphate aldolase, an enzyme of glycolysis. The subtypes are split into several models to allow separation of a family of tagatose bisphosphate aldolases. This form is found in Gram-positive bacteria, a variety of Gram-negative, and in amitochondriate protists. The class II enzymes share homology with tagatose bisphosphate aldolase but not with class I aldolase.
Probab=41.92 E-value=1.1e+02 Score=26.09 Aligned_cols=70 Identities=24% Similarity=0.417 Sum_probs=46.3
Q ss_pred CCHHHHHHHhhhhhhhhccCCCCCcccEEEEcCC--------CCCCCHHHHHHHHhccCCCCCCcEEEEeCCC-cHHHHH
Q 026776 60 DSGRRALQFLGLDEEQSINGFDGLKVDLIITDYC--------MPGMTGYELLKKIKDSSALREIPVVIMSSEN-ILARID 130 (233)
Q Consensus 60 ~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~--------mp~~~g~~ll~~Lr~~~~~~~~piIvlt~~~-~~~~~~ 130 (233)
.+.+++.+.. ....+|.+-+.+. -|.. +++.+++|++.- .+|+++.-+++ ..+...
T Consensus 153 t~~eea~~f~-----------~~tgvD~Lavs~Gt~hg~~~~~~~l-~~e~L~~i~~~~---~iPlv~hGgSGi~~e~i~ 217 (282)
T TIGR01859 153 ADPDEAEQFV-----------KETGVDYLAAAIGTSHGKYKGEPGL-DFERLKEIKELT---NIPLVLHGASGIPEEQIK 217 (282)
T ss_pred CCHHHHHHHH-----------HHHCcCEEeeccCccccccCCCCcc-CHHHHHHHHHHh---CCCEEEECCCCCCHHHHH
Confidence 3666666665 2235677765421 1233 588999998753 68998887554 456788
Q ss_pred HHHHcCCceEEeCC
Q 026776 131 RCLEDGAEDFIVKP 144 (233)
Q Consensus 131 ~al~~Ga~dyL~KP 144 (233)
++++.|++.+=.--
T Consensus 218 ~~i~~Gi~kiNv~T 231 (282)
T TIGR01859 218 KAIKLGIAKINIDT 231 (282)
T ss_pred HHHHcCCCEEEECc
Confidence 89999998875443
No 430
>KOG3111 consensus D-ribulose-5-phosphate 3-epimerase [Carbohydrate transport and metabolism]
Probab=41.82 E-value=1.9e+02 Score=23.65 Aligned_cols=56 Identities=18% Similarity=0.355 Sum_probs=37.7
Q ss_pred cccEEEEcCCCCCCCHHHH-------HHHHhccCCCCCCcEEEEeCCCcHHHHHHHHHcCCceEEe
Q 026776 84 KVDLIITDYCMPGMTGYEL-------LKKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIV 142 (233)
Q Consensus 84 ~~DlvllD~~mp~~~g~~l-------l~~Lr~~~~~~~~piIvlt~~~~~~~~~~al~~Ga~dyL~ 142 (233)
..|++|+=..-|+..|-.+ .++||+..+ .+ .|=+-+.-..+.+..+.++||+..+.
T Consensus 134 ~~D~vLvMtVePGFGGQkFme~mm~KV~~lR~kyp--~l-~ievDGGv~~~ti~~~a~AGAN~iVa 196 (224)
T KOG3111|consen 134 HVDMVLVMTVEPGFGGQKFMEDMMPKVEWLREKYP--NL-DIEVDGGVGPSTIDKAAEAGANMIVA 196 (224)
T ss_pred cccEEEEEEecCCCchhhhHHHHHHHHHHHHHhCC--Cc-eEEecCCcCcchHHHHHHcCCCEEEe
Confidence 5788888777788888665 456776543 33 33344444566778899999986643
No 431
>cd06345 PBP1_ABC_ligand_binding_like_10 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Probab=41.72 E-value=2.2e+02 Score=24.29 Aligned_cols=65 Identities=23% Similarity=0.313 Sum_probs=40.0
Q ss_pred HHHHHHHHhhcCCEEEEE-------CCHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCCCCCHHHHHHHHhccCCCCC
Q 026776 42 RKVIERLLTISSCKVTAV-------DSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKKIKDSSALRE 114 (233)
Q Consensus 42 ~~~l~~~L~~~g~~v~~a-------~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp~~~g~~ll~~Lr~~~~~~~ 114 (233)
...++..++..|.++... .+....+..+ ....+|+|++.. ...++..+++.+++... .
T Consensus 161 ~~~~~~~~~~~G~~vv~~~~~~~~~~d~~~~v~~l-----------~~~~~d~v~~~~--~~~~~~~~~~~~~~~g~--~ 225 (344)
T cd06345 161 DAGIKALLPEAGLEVVSVERFSPDTTDFTPILQQI-----------KAADPDVIIAGF--SGNVGVLFTQQWAEQKV--P 225 (344)
T ss_pred HHHHHHHHHHcCCeEEEEEecCCCCCchHHHHHHH-----------HhcCCCEEEEee--cCchHHHHHHHHHHcCC--C
Confidence 344456666778766541 3445555555 345689999865 34467788888887653 4
Q ss_pred CcEEEEe
Q 026776 115 IPVVIMS 121 (233)
Q Consensus 115 ~piIvlt 121 (233)
.+++...
T Consensus 226 ~~~~~~~ 232 (344)
T cd06345 226 IPTIGIS 232 (344)
T ss_pred CceEEec
Confidence 5555544
No 432
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=41.72 E-value=2.5e+02 Score=24.92 Aligned_cols=89 Identities=11% Similarity=0.066 Sum_probs=50.0
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhcCC-EEE-EECCHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCCCCCHHHHHHHHh
Q 026776 30 VHVLAVDDSFVDRKVIERLLTISSC-KVT-AVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKKIK 107 (233)
Q Consensus 30 ~~ILIVddd~~~~~~l~~~L~~~g~-~v~-~a~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp~~~g~~ll~~Lr 107 (233)
.+|+-||-++...+..++.++..+. .+. ...+..+.+... ...+|+|++|---.+. +-++++.|.
T Consensus 256 ~~v~~vE~~~~av~~a~~N~~~~~~~~~~~~~~d~~~~~~~~------------~~~~D~vi~DPPr~G~-~~~~l~~l~ 322 (374)
T TIGR02085 256 TQLTGIEIESEAIACAQQSAQMLGLDNLSFAALDSAKFATAQ------------MSAPELVLVNPPRRGI-GKELCDYLS 322 (374)
T ss_pred CeEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHHhc------------CCCCCEEEECCCCCCC-cHHHHHHHH
Confidence 5789999998888888888777665 232 344554443221 1248999999432222 246667776
Q ss_pred ccCCCCCCcEEEEeCCCcHHHHHHHHHc
Q 026776 108 DSSALREIPVVIMSSENILARIDRCLED 135 (233)
Q Consensus 108 ~~~~~~~~piIvlt~~~~~~~~~~al~~ 135 (233)
...+ .-|++.+..-...+..+...
T Consensus 323 ~~~p----~~ivyvsc~p~TlaRDl~~L 346 (374)
T TIGR02085 323 QMAP----KFILYSSCNAQTMAKDIAEL 346 (374)
T ss_pred hcCC----CeEEEEEeCHHHHHHHHHHh
Confidence 5432 23444444433444444333
No 433
>PF06283 ThuA: Trehalose utilisation; PDB: 4E5V_A 1T0B_A.
Probab=41.68 E-value=88 Score=25.25 Aligned_cols=76 Identities=17% Similarity=0.142 Sum_probs=41.0
Q ss_pred EEEEEeCC---------HHHHHHHHHHHh-hcCCEEEEECCHHHHHH-HhhhhhhhhccCCCCCcccEEEEcCCCCC-CC
Q 026776 31 HVLAVDDS---------FVDRKVIERLLT-ISSCKVTAVDSGRRALQ-FLGLDEEQSINGFDGLKVDLIITDYCMPG-MT 98 (233)
Q Consensus 31 ~ILIVddd---------~~~~~~l~~~L~-~~g~~v~~a~~~~~al~-~l~~~~~~~~~~~~~~~~DlvllD~~mp~-~~ 98 (233)
||||+... +.....++.+|+ ..+++|...++....-. .| ..+|+||+.....+ .+
T Consensus 1 kvLi~~g~~~~~~h~~~~~~~~~l~~ll~~~~~~~v~~~~~~~~~~~~~L-------------~~~Dvvv~~~~~~~~l~ 67 (217)
T PF06283_consen 1 KVLIFSGGWSGYRHDSIPAAKKALAQLLEESEGFEVTVTEDPDDLTPENL-------------KGYDVVVFYNTGGDELT 67 (217)
T ss_dssp EEEEEES-SHHHCSHHHHHHHHHHHHHHHHTTCEEEEECCSGGCTSHHCH-------------CT-SEEEEE-SSCCGS-
T ss_pred CEEEEeCCcCCccCccHHHHHHHHHHHhccCCCEEEEEEeCcccCChhHh-------------cCCCEEEEECCCCCcCC
Confidence 57777655 256778888888 67899988776332211 12 26899999877643 33
Q ss_pred HHHHHHHHhccCCCCCCcEEEEe
Q 026776 99 GYELLKKIKDSSALREIPVVIMS 121 (233)
Q Consensus 99 g~~ll~~Lr~~~~~~~~piIvlt 121 (233)
. +..+.|++--. ...++|.+=
T Consensus 68 ~-~~~~al~~~v~-~Ggglv~lH 88 (217)
T PF06283_consen 68 D-EQRAALRDYVE-NGGGLVGLH 88 (217)
T ss_dssp H-HHHHHHHHHHH-TT-EEEEEG
T ss_pred H-HHHHHHHHHHH-cCCCEEEEc
Confidence 2 22222222110 156777774
No 434
>COG0647 NagD Predicted sugar phosphatases of the HAD superfamily [Carbohydrate transport and metabolism]
Probab=41.44 E-value=90 Score=26.62 Aligned_cols=39 Identities=23% Similarity=0.226 Sum_probs=29.1
Q ss_pred CcccEEEEcCCC-------CCCCHHHHHHHHhccCCCCCCcEEEEeCCCc
Q 026776 83 LKVDLIITDYCM-------PGMTGYELLKKIKDSSALREIPVVIMSSENI 125 (233)
Q Consensus 83 ~~~DlvllD~~m-------p~~~g~~ll~~Lr~~~~~~~~piIvlt~~~~ 125 (233)
..+|.+|+|+.= +--.+.++++.|++. ..|++++|.+..
T Consensus 6 ~~y~~~l~DlDGvl~~G~~~ipga~e~l~~L~~~----g~~~iflTNn~~ 51 (269)
T COG0647 6 DKYDGFLFDLDGVLYRGNEAIPGAAEALKRLKAA----GKPVIFLTNNST 51 (269)
T ss_pred hhcCEEEEcCcCceEeCCccCchHHHHHHHHHHc----CCeEEEEeCCCC
Confidence 358899999742 123467899999875 679999998864
No 435
>cd03146 GAT1_Peptidase_E Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. Type 1 glutamine amidotransferase (GATase1)-like domain found in peptidase E. This group contains proteins similar to the aspartyl dipeptidases Salmonella typhimurium peptidase E and Xenopus laevis peptidase E. In bacteria peptidase E is believed to play a role in degrading peptides generated by intracellular protein breakdown or imported into the cell as nutrient sources. Peptidase E uniquely hydrolyses only Asp-X dipeptides (where X is any amino acid), and one tripeptide Asp-Gly-Gly. Peptidase E is believed to be a serine peptidase having a Ser-His-Glu catalytic triad which differs from the Cys-His-Glu catalytic triad typical of GATase1 domains by having a Ser in place of the reactive Cys at the nucleophile elbow. Xenopus PepE is developmentally regulated in response to thyroid hormone and, it is thought to play a role in apoptosis during tail reabsorption.
Probab=41.43 E-value=1.9e+02 Score=23.36 Aligned_cols=66 Identities=18% Similarity=0.162 Sum_probs=42.7
Q ss_pred CCCcEEEEEeC----CHHHHHHHHHHHhhc-CCEEEEECCH--HHHHHHhhhhhhhhccCCCCCcccEEEEcCCCCCCCH
Q 026776 27 TEEVHVLAVDD----SFVDRKVIERLLTIS-SCKVTAVDSG--RRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTG 99 (233)
Q Consensus 27 ~~~~~ILIVdd----d~~~~~~l~~~L~~~-g~~v~~a~~~--~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp~~~g 99 (233)
.+..+|++|-. .......+...|+.. |+++...... .+..+.+ ...|+|++ |+.+-
T Consensus 29 ~~~~~i~~IptAs~~~~~~~~~~~~a~~~l~G~~~~~~~~~~~~~~~~~l-------------~~ad~I~l----~GG~~ 91 (212)
T cd03146 29 KARPKVLFVPTASGDRDEYTARFYAAFESLRGVEVSHLHLFDTEDPLDAL-------------LEADVIYV----GGGNT 91 (212)
T ss_pred cCCCeEEEECCCCCCHHHHHHHHHHHHhhccCcEEEEEeccCcccHHHHH-------------hcCCEEEE----CCchH
Confidence 35678988843 345566677888889 9887766522 2223333 14689987 56677
Q ss_pred HHHHHHHhcc
Q 026776 100 YELLKKIKDS 109 (233)
Q Consensus 100 ~~ll~~Lr~~ 109 (233)
..+++.|++.
T Consensus 92 ~~~~~~l~~~ 101 (212)
T cd03146 92 FNLLAQWREH 101 (212)
T ss_pred HHHHHHHHHc
Confidence 7777777653
No 436
>COG1908 FrhD Coenzyme F420-reducing hydrogenase, delta subunit [Energy production and conversion]
Probab=41.35 E-value=87 Score=23.40 Aligned_cols=50 Identities=14% Similarity=0.230 Sum_probs=33.3
Q ss_pred HHHHHHHHhccCCCCCCcEE--EEeCCCcHHHHHHHHHcCCceEEeCCCCHHH
Q 026776 99 GYELLKKIKDSSALREIPVV--IMSSENILARIDRCLEDGAEDFIVKPVKLSD 149 (233)
Q Consensus 99 g~~ll~~Lr~~~~~~~~piI--vlt~~~~~~~~~~al~~Ga~dyL~KP~~~~e 149 (233)
+.++....|-..+ +.+.|| .-++.-+.+.+.+|+..|+|+++.--....|
T Consensus 15 aaDlag~~rmqyp-~~vRiIrv~CsGrvn~~fvl~Al~~GaDGV~v~GC~~ge 66 (132)
T COG1908 15 AADLAGTSRMQYP-PNVRIIRVMCSGRVNPEFVLKALRKGADGVLVAGCKIGE 66 (132)
T ss_pred chhhhccccccCC-CceEEEEeeccCccCHHHHHHHHHcCCCeEEEecccccc
Confidence 3344444443332 244444 3466778999999999999999998777555
No 437
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=41.29 E-value=2.2e+02 Score=23.97 Aligned_cols=52 Identities=21% Similarity=0.199 Sum_probs=27.4
Q ss_pred EEEEEeCCHHHHHHHHHHHhhcC-------CEEEEECCHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCC
Q 026776 31 HVLAVDDSFVDRKVIERLLTISS-------CKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMP 95 (233)
Q Consensus 31 ~ILIVddd~~~~~~l~~~L~~~g-------~~v~~a~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp 95 (233)
+|.+||-++...+..++.+...+ .++. ..++.+.++.. ...||+||+|..-|
T Consensus 98 ~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~-~~D~~~~l~~~------------~~~yDvIi~D~~~~ 156 (270)
T TIGR00417 98 KATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQ-IDDGFKFLADT------------ENTFDVIIVDSTDP 156 (270)
T ss_pred eEEEEeCCHHHHHHHHHHhHhhcccccCCceEEE-ECchHHHHHhC------------CCCccEEEEeCCCC
Confidence 46666666666666665553321 1121 23443333321 34699999987644
No 438
>PRK06444 prephenate dehydrogenase; Provisional
Probab=41.27 E-value=61 Score=26.23 Aligned_cols=29 Identities=10% Similarity=0.013 Sum_probs=25.5
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhcCCEEEE
Q 026776 30 VHVLAVDDSFVDRKVIERLLTISSCKVTA 58 (233)
Q Consensus 30 ~~ILIVddd~~~~~~l~~~L~~~g~~v~~ 58 (233)
++|.||...-...+.+..+|++.||.|..
T Consensus 1 ~~~~iiG~~G~mG~~~~~~~~~~g~~v~~ 29 (197)
T PRK06444 1 MMEIIIGKNGRLGRVLCSILDDNGLGVYI 29 (197)
T ss_pred CEEEEEecCCcHHHHHHHHHHhCCCEEEE
Confidence 47999999999999999999999988753
No 439
>TIGR00524 eIF-2B_rel eIF-2B alpha/beta/delta-related uncharacterized proteins. This model, eIF-2B_rel, describes half of a superfamily, where the other half consists of eukaryotic translation initiation factor 2B (eIF-2B) subunits alpha, beta, and delta. It is unclear whether the eIF-2B_rel set is monophyletic, or whether they are all more closely related to each other than to any eIF-2B subunit because the eIF-2B clade is highly derived. Members of this branch of the family are all uncharacterized with respect to function and are found in the Archaea, Bacteria, and Eukarya, although a number are described as putative translation intiation factor components. Proteins found by eIF-2B_rel include at least three clades, including a set of uncharacterized eukaryotic proteins, a set found in some but not all Archaea, and a set universal so far among the Archaea and closely related to several uncharacterized bacterial proteins.
Probab=41.17 E-value=1.3e+02 Score=26.13 Aligned_cols=83 Identities=14% Similarity=0.166 Sum_probs=53.3
Q ss_pred CCCcEEEEEeCCHHHH--HHHHHHHhhcCCEEEEECCHHHHHHHhhhhhhhhccCCCCCcccEEEEcCC--CCC-----C
Q 026776 27 TEEVHVLAVDDSFVDR--KVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYC--MPG-----M 97 (233)
Q Consensus 27 ~~~~~ILIVddd~~~~--~~l~~~L~~~g~~v~~a~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~--mp~-----~ 97 (233)
.++++|+++|..|... ..+...|.+.|..++...+..-+.-+ .....|.||+..+ +.+ .
T Consensus 150 g~~~~V~v~EsrP~~~G~~~~a~~L~~~gI~vtlI~Dsa~~~~m------------~~~~vd~VlvGAd~v~~nG~v~nk 217 (303)
T TIGR00524 150 GKRIRVIACETRPRNQGSRLTAWELMQDGIDVTLITDSMAAYFM------------QKGEIDAVIVGADRIARNGDVANK 217 (303)
T ss_pred CCceEEEECCCCCccchHHHHHHHHHHCCCCEEEEChhHHHHHc------------cccCCCEEEEcccEEecCCCEeEh
Confidence 4578999888777643 45677888899999888765444332 2335788887543 232 2
Q ss_pred CHHHHHHHHhccCCCCCCcEEEEeCCC
Q 026776 98 TGYELLKKIKDSSALREIPVVIMSSEN 124 (233)
Q Consensus 98 ~g~~ll~~Lr~~~~~~~~piIvlt~~~ 124 (233)
-|.-.+..+-+.. ++|+++++...
T Consensus 218 ~GT~~lA~~Ak~~---~vPv~V~a~s~ 241 (303)
T TIGR00524 218 IGTYQLAVLAKEF---RIPFFVAAPLS 241 (303)
T ss_pred hhHHHHHHHHHHh---CCCEEEecccc
Confidence 3544555543322 78999987654
No 440
>cd01573 modD_like ModD; Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase) present in some modABC operons in bacteria, which are involved in molybdate transport. In general, QPRTases are part of the de novo synthesis pathway of NAD in both prokaryotes and eukaryotes. They catalyse the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide.
Probab=41.12 E-value=1e+02 Score=26.26 Aligned_cols=55 Identities=13% Similarity=0.233 Sum_probs=39.9
Q ss_pred HHHHHHHhccCCCCCCcEEEEeCCCcHHHHHHHHHcCCceEEeCCCCHHHHHHHHHHHh
Q 026776 100 YELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVKLSDVKRIKDYLT 158 (233)
Q Consensus 100 ~~ll~~Lr~~~~~~~~piIvlt~~~~~~~~~~al~~Ga~dyL~KP~~~~eL~~~~~~l~ 158 (233)
.+.++.+|+..+ .. +|.++.+ +.+++.++.+.|+|....-|+.+.++..++..+.
T Consensus 171 ~~av~~~R~~~~--~~-~IgVev~-t~eea~~A~~~gaD~I~ld~~~p~~l~~~~~~~~ 225 (272)
T cd01573 171 LKALARLRATAP--EK-KIVVEVD-SLEEALAAAEAGADILQLDKFSPEELAELVPKLR 225 (272)
T ss_pred HHHHHHHHHhCC--CC-eEEEEcC-CHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHh
Confidence 567777777543 34 4555554 4567778899999999999999999877766554
No 441
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=41.09 E-value=1.2e+02 Score=23.98 Aligned_cols=13 Identities=23% Similarity=0.391 Sum_probs=6.3
Q ss_pred HHHHHcCCceEEe
Q 026776 130 DRCLEDGAEDFIV 142 (233)
Q Consensus 130 ~~al~~Ga~dyL~ 142 (233)
..+.++|++.++.
T Consensus 71 ~~~~~aGad~i~~ 83 (202)
T cd04726 71 EMAFKAGADIVTV 83 (202)
T ss_pred HHHHhcCCCEEEE
Confidence 4445555554443
No 442
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=41.01 E-value=2e+02 Score=23.51 Aligned_cols=76 Identities=13% Similarity=0.197 Sum_probs=50.1
Q ss_pred HHhhcCCEEE-EECCHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCC-CCCHHHHHHHHhccCCCCCCcEEEEeCCCc
Q 026776 48 LLTISSCKVT-AVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMP-GMTGYELLKKIKDSSALREIPVVIMSSENI 125 (233)
Q Consensus 48 ~L~~~g~~v~-~a~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp-~~~g~~ll~~Lr~~~~~~~~piIvlt~~~~ 125 (233)
...+.|.-+. -+.+..|+.... ...+|+|=+ .| +.-|.+.++.++...+ .+|++.. +.-+
T Consensus 104 ~~~~~~i~~iPG~~T~~E~~~A~------------~~Gad~vkl---FPa~~~G~~~ik~l~~~~p--~ip~~at-GGI~ 165 (213)
T PRK06552 104 ICNLYQIPYLPGCMTVTEIVTAL------------EAGSEIVKL---FPGSTLGPSFIKAIKGPLP--QVNVMVT-GGVN 165 (213)
T ss_pred HHHHcCCCEECCcCCHHHHHHHH------------HcCCCEEEE---CCcccCCHHHHHHHhhhCC--CCEEEEE-CCCC
Confidence 3344443222 355777777665 235677776 33 4457899999987544 7888754 4456
Q ss_pred HHHHHHHHHcCCceEE
Q 026776 126 LARIDRCLEDGAEDFI 141 (233)
Q Consensus 126 ~~~~~~al~~Ga~dyL 141 (233)
.+.+.+.+++|++.+-
T Consensus 166 ~~N~~~~l~aGa~~va 181 (213)
T PRK06552 166 LDNVKDWFAAGADAVG 181 (213)
T ss_pred HHHHHHHHHCCCcEEE
Confidence 7888899999987763
No 443
>PRK06978 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=40.86 E-value=1.3e+02 Score=26.06 Aligned_cols=70 Identities=20% Similarity=0.283 Sum_probs=48.2
Q ss_pred ccEEEE-cCCCCCCCH-HHHHHHHhccCCCCCCcEEEEeCCCcHHHHHHHHHcCCceEEeCCCCHHHHHHHHHHHh
Q 026776 85 VDLIIT-DYCMPGMTG-YELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVKLSDVKRIKDYLT 158 (233)
Q Consensus 85 ~Dlvll-D~~mp~~~g-~~ll~~Lr~~~~~~~~piIvlt~~~~~~~~~~al~~Ga~dyL~KP~~~~eL~~~~~~l~ 158 (233)
+|.|++ |-++--..| -++++.+|+... ..+|.+ .-.+.+++.+++++|+|-.++--++++++.+++..+.
T Consensus 176 sD~vLIkdNHi~~~G~i~~av~~~r~~~~--~~kIeV--Evetleea~eA~~aGaDiImLDnmspe~l~~av~~~~ 247 (294)
T PRK06978 176 YDGILIKENHIAAAGGVGAALDAAFALNA--GVPVQI--EVETLAQLETALAHGAQSVLLDNFTLDMMREAVRVTA 247 (294)
T ss_pred CceEEEeHHHHHHhCCHHHHHHHHHHhCC--CCcEEE--EcCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHhhc
Confidence 566665 433322222 357777877543 344433 3345788899999999999999999999999887653
No 444
>COG1184 GCD2 Translation initiation factor 2B subunit, eIF-2B alpha/beta/delta family [Translation, ribosomal structure and biogenesis]
Probab=40.82 E-value=75 Score=27.61 Aligned_cols=80 Identities=19% Similarity=0.293 Sum_probs=49.9
Q ss_pred CCEEEEECCHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCCCCCHHHHHHHHhccCCCCCCcEEEEeCCCcHHHH--H
Q 026776 53 SCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKKIKDSSALREIPVVIMSSENILARI--D 130 (233)
Q Consensus 53 g~~v~~a~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp~~~g~~ll~~Lr~~~~~~~~piIvlt~~~~~~~~--~ 130 (233)
|-.+.+..+...+++.+....+ ...++.|++++- -|...|..+.+.|++. .+++.+++.....-.. .
T Consensus 120 g~~IlTh~~S~~v~~~l~~A~~------~~k~~~V~VtES-RP~~eG~~~ak~L~~~----gI~~~~I~Dsa~~~~~~~v 188 (301)
T COG1184 120 GDVILTHSFSKTVLEVLKTAAD------RGKRFKVIVTES-RPRGEGRIMAKELRQS----GIPVTVIVDSAVGAFMSRV 188 (301)
T ss_pred CCEEEEecCcHHHHHHHHHhhh------cCCceEEEEEcC-CCcchHHHHHHHHHHc----CCceEEEechHHHHHHHhC
Confidence 4455666666777776654322 334589999985 4888899999999986 5677777755432222 1
Q ss_pred HHHHcCCceEEeC
Q 026776 131 RCLEDGAEDFIVK 143 (233)
Q Consensus 131 ~al~~Ga~dyL~K 143 (233)
...-.|+|.++.-
T Consensus 189 d~VivGad~I~~n 201 (301)
T COG1184 189 DKVLVGADAILAN 201 (301)
T ss_pred CEEEECccceecC
Confidence 1122366555544
No 445
>PRK03692 putative UDP-N-acetyl-D-mannosaminuronic acid transferase; Provisional
Probab=40.78 E-value=1.2e+02 Score=25.34 Aligned_cols=70 Identities=9% Similarity=0.052 Sum_probs=47.2
Q ss_pred CCCcEEEEEeCCHHHHHHHHHHHhh-cCCEEEEEC----CH---HHHHHHhhhhhhhhccCCCCCcccEEEEcCCCCCCC
Q 026776 27 TEEVHVLAVDDSFVDRKVIERLLTI-SSCKVTAVD----SG---RRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMT 98 (233)
Q Consensus 27 ~~~~~ILIVddd~~~~~~l~~~L~~-~g~~v~~a~----~~---~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp~~~ 98 (233)
.++.+|.++...+...+.+.+.|+. .|.++..+. +. ++.++.+ ....+|+|++-+.+|...
T Consensus 103 ~~~~~v~llG~~~~v~~~a~~~l~~~y~l~i~g~~~Gyf~~~e~~~i~~~I-----------~~s~~dil~VglG~PkQE 171 (243)
T PRK03692 103 KEGTPVFLVGGKPEVLAQTEAKLRTQWNVNIVGSQDGYFTPEQRQALFERI-----------HASGAKIVTVAMGSPKQE 171 (243)
T ss_pred hcCCeEEEECCCHHHHHHHHHHHHHHhCCEEEEEeCCCCCHHHHHHHHHHH-----------HhcCCCEEEEECCCcHHH
Confidence 3458999999999988888888754 355554322 11 2234444 456799999999999866
Q ss_pred HHHHHHHHhcc
Q 026776 99 GYELLKKIKDS 109 (233)
Q Consensus 99 g~~ll~~Lr~~ 109 (233)
- ++..+++.
T Consensus 172 ~--~~~~~~~~ 180 (243)
T PRK03692 172 I--FMRDCRLV 180 (243)
T ss_pred H--HHHHHHHh
Confidence 5 35555543
No 446
>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=40.76 E-value=2.1e+02 Score=23.71 Aligned_cols=56 Identities=16% Similarity=0.305 Sum_probs=38.8
Q ss_pred ccc-EEEEcCCC---CCCCHHHHHHHHhccCCCCCCcEEEEeCCCcHHHHHHHHHc-CCceEEe
Q 026776 84 KVD-LIITDYCM---PGMTGYELLKKIKDSSALREIPVVIMSSENILARIDRCLED-GAEDFIV 142 (233)
Q Consensus 84 ~~D-lvllD~~m---p~~~g~~ll~~Lr~~~~~~~~piIvlt~~~~~~~~~~al~~-Ga~dyL~ 142 (233)
.++ +++.|+.- ...-.+++++++++.. .+|+|+-.+-.+.++..++++. |+++.+.
T Consensus 166 g~~~ii~~~i~~~g~~~g~d~~~i~~~~~~~---~ipvia~GGv~s~~d~~~~~~~~G~~gviv 226 (253)
T PRK02083 166 GAGEILLTSMDRDGTKNGYDLELTRAVSDAV---NVPVIASGGAGNLEHFVEAFTEGGADAALA 226 (253)
T ss_pred CCCEEEEcCCcCCCCCCCcCHHHHHHHHhhC---CCCEEEECCCCCHHHHHHHHHhCCccEEeE
Confidence 454 56655432 1122367788887643 6899988888888888888975 9998876
No 447
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=40.69 E-value=2.1e+02 Score=23.76 Aligned_cols=40 Identities=20% Similarity=0.361 Sum_probs=32.6
Q ss_pred HHHHHHHhccCCCCCCcEEEEeCCCcHHHHHHHHHcC-CceEEe
Q 026776 100 YELLKKIKDSSALREIPVVIMSSENILARIDRCLEDG-AEDFIV 142 (233)
Q Consensus 100 ~~ll~~Lr~~~~~~~~piIvlt~~~~~~~~~~al~~G-a~dyL~ 142 (233)
+++++.+++.. .+|+|+..+-.+.+.+.++++.| +++.+.
T Consensus 188 ~~~~~~i~~~~---~ipvia~GGi~s~~di~~~~~~g~~dgv~~ 228 (254)
T TIGR00735 188 LELTKAVSEAV---KIPVIASGGAGKPEHFYEAFTKGKADAALA 228 (254)
T ss_pred HHHHHHHHHhC---CCCEEEeCCCCCHHHHHHHHHcCCcceeeE
Confidence 67888888753 78999888888899999999988 888543
No 448
>cd08181 PPD-like 1,3-propanediol dehydrogenase-like (PPD). 1,3-propanediol dehydrogenase-like (PPD). This family is a member of the iron-containing alcohol dehydrogenase superfamily, and exhibits a dehydroquinate synthase-like fold. Protein sequence similarity search and other biochemical evidences suggest that they are close to the iron-containing 1,3-propanediol dehydrogenase (EC 1.1.1.202). 1,3-propanediol dehydrogenase catalyzes the oxidation of propane-1,3-diol to 3-hydroxypropanal with the simultaneous reduction of NADP+ to NADPH. The protein structure of Thermotoga maritima TM0920 gene contains one NADP+ and one iron ion.
Probab=40.68 E-value=2.6e+02 Score=24.65 Aligned_cols=63 Identities=17% Similarity=0.172 Sum_probs=39.4
Q ss_pred cEEEEEeCCHHH-----HHHHHHHHhhcCCEEEEEC------C---HHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCC
Q 026776 30 VHVLAVDDSFVD-----RKVIERLLTISSCKVTAVD------S---GRRALQFLGLDEEQSINGFDGLKVDLIITDYCMP 95 (233)
Q Consensus 30 ~~ILIVddd~~~-----~~~l~~~L~~~g~~v~~a~------~---~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp 95 (233)
-|+|||-|.... ...+...|+..|.++..++ + ..++.+.+ +...+|+||- ..
T Consensus 26 ~r~lvVt~~~~~~~~g~~~~v~~~L~~~g~~~~~~~~v~~~p~~~~v~~~~~~~-----------~~~~~D~IIa---vG 91 (357)
T cd08181 26 KRALIVTGKSSAKKNGSLDDVTKALEELGIEYEIFDEVEENPSLETIMEAVEIA-----------KKFNADFVIG---IG 91 (357)
T ss_pred CEEEEEeCCchHhhcCcHHHHHHHHHHcCCeEEEeCCCCCCcCHHHHHHHHHHH-----------HhcCCCEEEE---eC
Confidence 478888776542 2557777887777666553 2 33344444 4567898874 56
Q ss_pred CCCHHHHHHHH
Q 026776 96 GMTGYELLKKI 106 (233)
Q Consensus 96 ~~~g~~ll~~L 106 (233)
+.+-+++.+.+
T Consensus 92 GGSviD~aK~i 102 (357)
T cd08181 92 GGSPLDAAKAI 102 (357)
T ss_pred CchHHHHHHHH
Confidence 76667776654
No 449
>PRK13609 diacylglycerol glucosyltransferase; Provisional
Probab=40.61 E-value=2.5e+02 Score=24.48 Aligned_cols=61 Identities=18% Similarity=0.104 Sum_probs=30.7
Q ss_pred ccEEEEcCCCCCCCHHHHHHHHhccCCCCCCcEEEEeCC-CcHHH-HHHHHHcCCceEEeCCCCHHHHHHHHHHHh
Q 026776 85 VDLIITDYCMPGMTGYELLKKIKDSSALREIPVVIMSSE-NILAR-IDRCLEDGAEDFIVKPVKLSDVKRIKDYLT 158 (233)
Q Consensus 85 ~DlvllD~~mp~~~g~~ll~~Lr~~~~~~~~piIvlt~~-~~~~~-~~~al~~Ga~dyL~KP~~~~eL~~~~~~l~ 158 (233)
.|+++.. ..|..+++.+-. .+|+|+.... +.... .....+.|+ .....+.++|.+.+..+.
T Consensus 274 aD~~v~~-----~gg~t~~EA~a~-----g~PvI~~~~~~g~~~~n~~~~~~~G~---~~~~~~~~~l~~~i~~ll 336 (380)
T PRK13609 274 TSCMITK-----PGGITLSEAAAL-----GVPVILYKPVPGQEKENAMYFERKGA---AVVIRDDEEVFAKTEALL 336 (380)
T ss_pred ccEEEeC-----CCchHHHHHHHh-----CCCEEECCCCCCcchHHHHHHHhCCc---EEEECCHHHHHHHHHHHH
Confidence 4666652 236666666543 7787765422 21111 222234454 223456777776665554
No 450
>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase
Probab=40.57 E-value=4.3e+02 Score=27.28 Aligned_cols=113 Identities=12% Similarity=0.154 Sum_probs=61.8
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHhhcCCE-------------EEEECCHHHHHHHhhhhhhhhccCCCCC-cccEEEEcCC
Q 026776 28 EEVHVLAVDDSFVDRKVIERLLTISSCK-------------VTAVDSGRRALQFLGLDEEQSINGFDGL-KVDLIITDYC 93 (233)
Q Consensus 28 ~~~~ILIVddd~~~~~~l~~~L~~~g~~-------------v~~a~~~~~al~~l~~~~~~~~~~~~~~-~~DlvllD~~ 93 (233)
+..+|+|+.--..-+..+..+.+..+++ |..++...+..+.+. ... ....+-+|+.
T Consensus 568 ~~~rIlVLGAG~VG~~~a~~La~~~~~~~~~~~~~~~~~~lV~VaD~~~~~a~~la----------~~~~~~~~v~lDv~ 637 (1042)
T PLN02819 568 KSQNVLILGAGRVCRPAAEYLASVKTISYYGDDSEEPTDVHVIVASLYLKDAKETV----------EGIENAEAVQLDVS 637 (1042)
T ss_pred cCCcEEEECCCHHHHHHHHHHHhCcCccccccccccccccEEEEECCCHHHHHHHH----------HhcCCCceEEeecC
Confidence 3558999997665554444443333333 555653333333331 111 2345666642
Q ss_pred CCCCCHHHHHHHHhccCCCCCCcEEEEeCCCcHHHHHHHHHcCCceEEeCCCCHHHHHHHHHHHhh
Q 026776 94 MPGMTGYELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVKLSDVKRIKDYLTR 159 (233)
Q Consensus 94 mp~~~g~~ll~~Lr~~~~~~~~piIvlt~~~~~~~~~~al~~Ga~dyL~KP~~~~eL~~~~~~l~~ 159 (233)
|--++.+.+++. ++.|+.+-.......+..|+++|.+-+..| +..++..++.+...+
T Consensus 638 ----D~e~L~~~v~~~----DaVIsalP~~~H~~VAkaAieaGkHvv~ek-y~~~e~~~L~e~Ak~ 694 (1042)
T PLN02819 638 ----DSESLLKYVSQV----DVVISLLPASCHAVVAKACIELKKHLVTAS-YVSEEMSALDSKAKE 694 (1042)
T ss_pred ----CHHHHHHhhcCC----CEEEECCCchhhHHHHHHHHHcCCCEEECc-CCHHHHHHHHHHHHH
Confidence 334455555531 444443433445677888999999877777 777776665555443
No 451
>PRK06096 molybdenum transport protein ModD; Provisional
Probab=40.49 E-value=1.5e+02 Score=25.50 Aligned_cols=54 Identities=7% Similarity=0.125 Sum_probs=41.0
Q ss_pred HHHHHHhccCCCCCCcEEEEeCCCcHHHHHHHHHcCCceEEeCCCCHHHHHHHHHHHh
Q 026776 101 ELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVKLSDVKRIKDYLT 158 (233)
Q Consensus 101 ~ll~~Lr~~~~~~~~piIvlt~~~~~~~~~~al~~Ga~dyL~KP~~~~eL~~~~~~l~ 158 (233)
+.++.+|+..+ ...|.+= -.+.+++.+++++|+|-.+.--++++++.+++..+.
T Consensus 178 ~av~~~r~~~~--~~kIeVE--v~tleqa~ea~~agaDiI~LDn~~~e~l~~av~~~~ 231 (284)
T PRK06096 178 GAINQLRRHAP--EKKIVVE--ADTPKEAIAALRAQPDVLQLDKFSPQQATEIAQIAP 231 (284)
T ss_pred HHHHHHHHhCC--CCCEEEE--CCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHhh
Confidence 56777776543 4444433 346788899999999999999999999998887653
No 452
>KOG1429 consensus dTDP-glucose 4-6-dehydratase/UDP-glucuronic acid decarboxylase [Carbohydrate transport and metabolism; Cell wall/membrane/envelope biogenesis]
Probab=40.19 E-value=80 Score=27.51 Aligned_cols=71 Identities=13% Similarity=0.025 Sum_probs=49.8
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHhhcCCEEEEECCHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCCCCCHHHHHH
Q 026776 28 EEVHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLK 104 (233)
Q Consensus 28 ~~~~ILIVddd~~~~~~l~~~L~~~g~~v~~a~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp~~~g~~ll~ 104 (233)
+.++|+|...--.+..-|.+-|...|+.|...++........- ..++....++++..|+..|-.-+.+.+=
T Consensus 26 ~~lrI~itGgaGFIgSHLvdkLm~egh~VIa~Dn~ftg~k~n~------~~~~~~~~fel~~hdv~~pl~~evD~Iy 96 (350)
T KOG1429|consen 26 QNLRILITGGAGFIGSHLVDKLMTEGHEVIALDNYFTGRKENL------EHWIGHPNFELIRHDVVEPLLKEVDQIY 96 (350)
T ss_pred CCcEEEEecCcchHHHHHHHHHHhcCCeEEEEecccccchhhc------chhccCcceeEEEeechhHHHHHhhhhh
Confidence 4599999999999999998888888999988765443332210 1112466799999999888544444333
No 453
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=40.14 E-value=3e+02 Score=25.25 Aligned_cols=31 Identities=23% Similarity=0.350 Sum_probs=25.5
Q ss_pred CCcEEEEeCCCcHHHHHHHHHcCCceEEeCC
Q 026776 114 EIPVVIMSSENILARIDRCLEDGAEDFIVKP 144 (233)
Q Consensus 114 ~~piIvlt~~~~~~~~~~al~~Ga~dyL~KP 144 (233)
.+|||.-.+-....++.+|+.+||+.+..=-
T Consensus 327 ~vpviadGGi~~~~di~kAla~GA~~V~~G~ 357 (450)
T TIGR01302 327 GIPVIADGGIRYSGDIVKALAAGADAVMLGS 357 (450)
T ss_pred CCeEEEeCCCCCHHHHHHHHHcCCCEEEECc
Confidence 6788876677788999999999999887643
No 454
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=40.10 E-value=1.2e+02 Score=30.35 Aligned_cols=71 Identities=13% Similarity=0.274 Sum_probs=43.6
Q ss_pred CcccEEEEc-CCCCCCCHHH-HHHHHhccCCCCCCcEEEEeCCCcHHHHHHHHHcCCceEEeCCCCHHHHHHHHHHH
Q 026776 83 LKVDLIITD-YCMPGMTGYE-LLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVKLSDVKRIKDYL 157 (233)
Q Consensus 83 ~~~DlvllD-~~mp~~~g~~-ll~~Lr~~~~~~~~piIvlt~~~~~~~~~~al~~Ga~dyL~KP~~~~eL~~~~~~l 157 (233)
..+.|+|+| .++-...+.+ |++.|.+-.. .+.+|+++.+. +.+...++.-+.-|-.+++..++|...+..+
T Consensus 119 ~~~KV~IIDEad~lt~~a~NaLLK~LEEpP~--~~~fIl~tt~~--~kLl~TIrSRc~~v~F~~l~~~~l~~~L~~i 191 (824)
T PRK07764 119 SRYKIFIIDEAHMVTPQGFNALLKIVEEPPE--HLKFIFATTEP--DKVIGTIRSRTHHYPFRLVPPEVMRGYLERI 191 (824)
T ss_pred CCceEEEEechhhcCHHHHHHHHHHHhCCCC--CeEEEEEeCCh--hhhhHHHHhheeEEEeeCCCHHHHHHHHHHH
Confidence 357788887 4444444544 4455554332 56666666433 3355667777788888888888876555443
No 455
>PRK08335 translation initiation factor IF-2B subunit alpha; Validated
Probab=40.07 E-value=2.4e+02 Score=24.18 Aligned_cols=87 Identities=13% Similarity=0.182 Sum_probs=50.3
Q ss_pred CCEEEEECCHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCCCCCHHHHHHHHhccCCCCCCcEEEEeCCCcHHHHHH-
Q 026776 53 SCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKKIKDSSALREIPVVIMSSENILARIDR- 131 (233)
Q Consensus 53 g~~v~~a~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp~~~g~~ll~~Lr~~~~~~~~piIvlt~~~~~~~~~~- 131 (233)
|..|.+..+...++..++...+ ....+.+++.+ .-|...|..+.++|.+. .+|+.+++...-.....+
T Consensus 110 g~~ILTh~~S~tv~~~l~~A~~------~gk~~~V~v~E-srP~~qG~~la~eL~~~----GI~vtlI~Dsa~~~~m~~v 178 (275)
T PRK08335 110 GDVIITHSFSSAVLEILKTAKR------KGKRFKVILTE-SAPDYEGLALANELEFL----GIEFEVITDAQLGLFAKEA 178 (275)
T ss_pred CCEEEEECCcHHHHHHHHHHHH------cCCceEEEEec-CCCchhHHHHHHHHHHC----CCCEEEEeccHHHHHHHhC
Confidence 4445555555566665543221 34457777665 45888999999999875 678888876653222211
Q ss_pred -HHHcCCceEEeCCCCHHHH
Q 026776 132 -CLEDGAEDFIVKPVKLSDV 150 (233)
Q Consensus 132 -al~~Ga~dyL~KP~~~~eL 150 (233)
..-.|+|..+.--.-...+
T Consensus 179 d~VivGAD~I~~nG~v~NKi 198 (275)
T PRK08335 179 TLALVGADNVTRDGYVVNKA 198 (275)
T ss_pred CEEEECccEEecCCCEeehh
Confidence 1123666555544333333
No 456
>cd06281 PBP1_LacI_like_5 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=40.02 E-value=2e+02 Score=23.37 Aligned_cols=21 Identities=0% Similarity=0.020 Sum_probs=9.5
Q ss_pred HHHHHHHHhccCCCCCCcEEEEeC
Q 026776 99 GYELLKKIKDSSALREIPVVIMSS 122 (233)
Q Consensus 99 g~~ll~~Lr~~~~~~~~piIvlt~ 122 (233)
|..+.+.|.+.+ ...+.++++
T Consensus 104 g~~a~~~l~~~G---~~~i~~l~~ 124 (269)
T cd06281 104 MRQAVEYLISLG---HRRIALVGG 124 (269)
T ss_pred HHHHHHHHHHCC---CcEEEEecC
Confidence 344555555432 223454544
No 457
>cd06295 PBP1_CelR Ligand binding domain of a transcription regulator of cellulose genes, CelR, which is highly homologous to the LacI-GalR family of bacterial transcription regulators. This group includes the ligand binding domain of a transcription regulator of cellulose genes, CelR, which is highly homologous to the LacI-GalR family of bacterial transcription regulators. The binding of CelR to the celE promoter is inhibited specifically by cellobiose. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn chang
Probab=39.92 E-value=2e+02 Score=23.47 Aligned_cols=17 Identities=12% Similarity=-0.027 Sum_probs=9.5
Q ss_pred HHHHHHHhhcCCEEEEE
Q 026776 43 KVIERLLTISSCKVTAV 59 (233)
Q Consensus 43 ~~l~~~L~~~g~~v~~a 59 (233)
+.+.+.+++.||.+..+
T Consensus 30 ~gi~~~~~~~g~~~~v~ 46 (275)
T cd06295 30 GGIADALAERGYDLLLS 46 (275)
T ss_pred HHHHHHHHHcCCEEEEE
Confidence 33555556667665544
No 458
>cd08189 Fe-ADH5 Iron-containing alcohol dehydrogenases-like. Iron-containing alcohol dehydrogenase-like. Alcohol dehydrogenase catalyzes the reduction of acetaldehyde to alcohol with NADP as cofactor. Its activity requires iron ions. The protein structure represents a dehydroquinate synthase-like fold and belongs to the alcohol dehydrogenase-like superfamily. They are distinct from other alcohol dehydrogenases which contains different protein domain. Proteins of this family have not been characterized. Their specific function is unknown.
Probab=39.82 E-value=2.3e+02 Score=25.11 Aligned_cols=63 Identities=19% Similarity=0.129 Sum_probs=37.6
Q ss_pred cEEEEEeCCHHH----HHHHHHHHhhcCCEEEEECC---------HHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCCC
Q 026776 30 VHVLAVDDSFVD----RKVIERLLTISSCKVTAVDS---------GRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPG 96 (233)
Q Consensus 30 ~~ILIVddd~~~----~~~l~~~L~~~g~~v~~a~~---------~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp~ 96 (233)
-++|||-|.... .+.+...|+..|+.+..++. ..++.+.+ +...+|+||- +.+
T Consensus 27 ~~~lvvt~~~~~~~g~~~~v~~~L~~~g~~~~~~~~v~~~p~~~~v~~~~~~~-----------~~~~~d~IIa---iGG 92 (374)
T cd08189 27 KKVLIVTDKGLVKLGLLDKVLEALEGAGIEYAVYDGVPPDPTIENVEAGLALY-----------RENGCDAILA---VGG 92 (374)
T ss_pred CeEEEEeCcchhhcccHHHHHHHHHhcCCeEEEeCCCCCCcCHHHHHHHHHHH-----------HhcCCCEEEE---eCC
Confidence 378999776433 24456667777776665532 23444444 4457898873 456
Q ss_pred CCHHHHHHHH
Q 026776 97 MTGYELLKKI 106 (233)
Q Consensus 97 ~~g~~ll~~L 106 (233)
.+-+++.+.+
T Consensus 93 GS~~D~aK~i 102 (374)
T cd08189 93 GSVIDCAKAI 102 (374)
T ss_pred ccHHHHHHHH
Confidence 6666655544
No 459
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=39.79 E-value=2.5e+02 Score=24.22 Aligned_cols=68 Identities=13% Similarity=0.091 Sum_probs=41.0
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhcCCE-EE-EECCHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCCCCCHHHHHHHHh
Q 026776 30 VHVLAVDDSFVDRKVIERLLTISSCK-VT-AVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKKIK 107 (233)
Q Consensus 30 ~~ILIVddd~~~~~~l~~~L~~~g~~-v~-~a~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp~~~g~~ll~~Lr 107 (233)
.+|.-||-++...+..++.++..|.. +. ...+..+..... ...||+|++|---.+. +-++++.|.
T Consensus 196 ~~V~gvD~s~~av~~A~~n~~~~~l~~v~~~~~D~~~~~~~~------------~~~~D~Vv~dPPr~G~-~~~~~~~l~ 262 (315)
T PRK03522 196 MQLTGIEISAEAIACAKQSAAELGLTNVQFQALDSTQFATAQ------------GEVPDLVLVNPPRRGI-GKELCDYLS 262 (315)
T ss_pred CEEEEEeCCHHHHHHHHHHHHHcCCCceEEEEcCHHHHHHhc------------CCCCeEEEECCCCCCc-cHHHHHHHH
Confidence 47889998888888877777766642 22 234444433211 1258999999422122 336677776
Q ss_pred ccC
Q 026776 108 DSS 110 (233)
Q Consensus 108 ~~~ 110 (233)
...
T Consensus 263 ~~~ 265 (315)
T PRK03522 263 QMA 265 (315)
T ss_pred HcC
Confidence 643
No 460
>cd03818 GT1_ExpC_like This family is most closely related to the GT1 family of glycosyltransferases. ExpC in Rhizobium meliloti has been shown to be involved in the biosynthesis of galactoglucan (exopolysaccharide II).
Probab=39.65 E-value=2.6e+02 Score=24.49 Aligned_cols=65 Identities=15% Similarity=0.159 Sum_probs=41.5
Q ss_pred ccEEEEcCCCCCCCHHHHHHHHhccCCCCCCcEEEEeCCCcHHHHHHHHHcCCceEEeCCCCHHHHHHHHHHHhh
Q 026776 85 VDLIITDYCMPGMTGYELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVKLSDVKRIKDYLTR 159 (233)
Q Consensus 85 ~DlvllD~~mp~~~g~~ll~~Lr~~~~~~~~piIvlt~~~~~~~~~~al~~Ga~dyL~KP~~~~eL~~~~~~l~~ 159 (233)
.|+.++ ...+..-|..+++.+-. .+|+|.- ... ...+.+..|..+++..+.+.+++.+.+..+..
T Consensus 301 adv~v~-~s~~e~~~~~llEAmA~-----G~PVIas-~~~---g~~e~i~~~~~G~lv~~~d~~~la~~i~~ll~ 365 (396)
T cd03818 301 SDVHVY-LTYPFVLSWSLLEAMAC-----GCLVVGS-DTA---PVREVITDGENGLLVDFFDPDALAAAVIELLD 365 (396)
T ss_pred CcEEEE-cCcccccchHHHHHHHC-----CCCEEEc-CCC---CchhhcccCCceEEcCCCCHHHHHHHHHHHHh
Confidence 355554 22344455666766643 6788753 322 23345667889999999999999877666544
No 461
>TIGR01163 rpe ribulose-phosphate 3-epimerase. This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants.
Probab=39.61 E-value=1.9e+02 Score=22.85 Aligned_cols=57 Identities=23% Similarity=0.381 Sum_probs=37.0
Q ss_pred CHHHHHHHHhccCCCCCCcE-EEEeCCCcHHHHHHHHHcCCceEEeCCCCHHHHHHHHHHH
Q 026776 98 TGYELLKKIKDSSALREIPV-VIMSSENILARIDRCLEDGAEDFIVKPVKLSDVKRIKDYL 157 (233)
Q Consensus 98 ~g~~ll~~Lr~~~~~~~~pi-Ivlt~~~~~~~~~~al~~Ga~dyL~KP~~~~eL~~~~~~l 157 (233)
-|.+.+++|++. . ..++ +.+........+..+.+.|++..+.-....++....++.+
T Consensus 43 ~~~~~v~~i~~~-~--~~~v~v~lm~~~~~~~~~~~~~~gadgv~vh~~~~~~~~~~~~~~ 100 (210)
T TIGR01163 43 FGPPVLEALRKY-T--DLPIDVHLMVENPDRYIEDFAEAGADIITVHPEASEHIHRLLQLI 100 (210)
T ss_pred cCHHHHHHHHhc-C--CCcEEEEeeeCCHHHHHHHHHHcCCCEEEEccCCchhHHHHHHHH
Confidence 578899999864 2 4555 3244455567788888999999777555444444444444
No 462
>cd06366 PBP1_GABAb_receptor Ligand-binding domain of GABAb receptors, which are metabotropic transmembrane receptors for gamma-aminobutyric acid (GABA). Ligand-binding domain of GABAb receptors, which are metabotropic transmembrane receptors for gamma-aminobutyric acid (GABA). GABA is the major inhibitory neurotransmitter in the mammalian CNS and, like glutamate and other transmitters, acts via both ligand gated ion channels (GABAa receptors) and G-protein coupled receptors (GABAb). GABAa receptors are members of the ionotropic receptor superfamily which includes alpha-adrenergic and glycine receptors. The GABAb receptor is a member of a receptor superfamily which includes the mGlu receptors. The GABAb receptor is coupled to G alpha_i proteins, and activation causes a decrease in calcium, an increase in potassium membrane conductance, and inhibition of cAMP formation. The response is thus inhibitory and leads to hyperpolarization and decreased neurotransmitter release, for example.
Probab=39.59 E-value=2.3e+02 Score=24.20 Aligned_cols=58 Identities=9% Similarity=0.030 Sum_probs=34.8
Q ss_pred HHHHHHHHHhhcCCEEEE---EC------CHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCCCCCHHHHHHHHhccCC
Q 026776 41 DRKVIERLLTISSCKVTA---VD------SGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKKIKDSSA 111 (233)
Q Consensus 41 ~~~~l~~~L~~~g~~v~~---a~------~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp~~~g~~ll~~Lr~~~~ 111 (233)
..+.+...++..|.++.. +. +....+..+ ....+|+|++.. ...+...+++.+++...
T Consensus 151 ~~~~~~~~~~~~g~~v~~~~~~~~~~~~~d~~~~l~~i-----------~~~~~dvvi~~~--~~~~~~~~~~~a~~~g~ 217 (350)
T cd06366 151 GLPDLVDALQEAGIEISYRAAFPPSANDDDITDALKKL-----------KEKDSRVIVVHF--SPDLARRVFCEAYKLGM 217 (350)
T ss_pred hHHHHHHHHHHcCCEEEEEeccCCCCChhHHHHHHHHH-----------hcCCCeEEEEEC--ChHHHHHHHHHHHHcCC
Confidence 345566667777766643 22 233334444 344688888765 34477778888887654
No 463
>cd06292 PBP1_LacI_like_10 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=39.41 E-value=1.5e+02 Score=24.19 Aligned_cols=7 Identities=0% Similarity=0.249 Sum_probs=3.2
Q ss_pred cEEEEcC
Q 026776 86 DLIITDY 92 (233)
Q Consensus 86 DlvllD~ 92 (233)
-+|++|.
T Consensus 85 pvV~i~~ 91 (273)
T cd06292 85 PVVLVNG 91 (273)
T ss_pred CEEEEcC
Confidence 3444444
No 464
>PRK05742 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=39.37 E-value=1.9e+02 Score=24.80 Aligned_cols=67 Identities=13% Similarity=0.118 Sum_probs=42.3
Q ss_pred EEECCHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCCCCCHHHHHHHHhccCCCCCCcEEEEeCCCcHHHHHHHHHcC
Q 026776 57 TAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKKIKDSSALREIPVVIMSSENILARIDRCLEDG 136 (233)
Q Consensus 57 ~~a~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp~~~g~~ll~~Lr~~~~~~~~piIvlt~~~~~~~~~~al~~G 136 (233)
..+.+.+++.+.+ ...+|+|.+|- | +.+-++++.+... .++|+.+. +.-+.+.+.+..+.|
T Consensus 194 VEv~tleea~eA~------------~~gaD~I~LD~-~----~~e~l~~~v~~~~-~~i~leAs-GGIt~~ni~~~a~tG 254 (277)
T PRK05742 194 VEVESLDELRQAL------------AAGADIVMLDE-L----SLDDMREAVRLTA-GRAKLEAS-GGINESTLRVIAETG 254 (277)
T ss_pred EEeCCHHHHHHHH------------HcCCCEEEECC-C----CHHHHHHHHHHhC-CCCcEEEE-CCCCHHHHHHHHHcC
Confidence 4477888888876 23589999983 2 3344444433211 25665544 455677778888999
Q ss_pred CceEEe
Q 026776 137 AEDFIV 142 (233)
Q Consensus 137 a~dyL~ 142 (233)
+|.+-.
T Consensus 255 vD~Isv 260 (277)
T PRK05742 255 VDYISI 260 (277)
T ss_pred CCEEEE
Confidence 987643
No 465
>PRK10537 voltage-gated potassium channel; Provisional
Probab=39.36 E-value=2.5e+02 Score=25.32 Aligned_cols=107 Identities=9% Similarity=0.035 Sum_probs=52.9
Q ss_pred CcEEEEEeCCHHHHHHHHHHHhhcCCEEEEECCHHHHHHHhhhh----------hhhhccCCCCCcccEEEEcCCCCCCC
Q 026776 29 EVHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLD----------EEQSINGFDGLKVDLIITDYCMPGMT 98 (233)
Q Consensus 29 ~~~ILIVddd~~~~~~l~~~L~~~g~~v~~a~~~~~al~~l~~~----------~~~~~~~~~~~~~DlvllD~~mp~~~ 98 (233)
+-+++|+.-...-+...++ |.+.|+.+...+.... +..... +++....+.-.+.+.+++-.. .+.+
T Consensus 240 k~HvII~G~g~lg~~v~~~-L~~~g~~vvVId~d~~--~~~~~~g~~vI~GD~td~e~L~~AgI~~A~aVI~~t~-dD~~ 315 (393)
T PRK10537 240 KDHFIICGHSPLAINTYLG-LRQRGQAVTVIVPLGL--EHRLPDDADLIPGDSSDSAVLKKAGAARARAILALRD-NDAD 315 (393)
T ss_pred CCeEEEECCChHHHHHHHH-HHHCCCCEEEEECchh--hhhccCCCcEEEeCCCCHHHHHhcCcccCCEEEEcCC-ChHH
Confidence 4678888888776665554 5556665554432111 111000 000000001123444544321 1222
Q ss_pred HHHHHHHHhccCCCCCCcEEEEeCCCcHHHHHHHHHcCCceEEeC
Q 026776 99 GYELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVK 143 (233)
Q Consensus 99 g~~ll~~Lr~~~~~~~~piIvlt~~~~~~~~~~al~~Ga~dyL~K 143 (233)
....+..+|+..+ +..+++...+. +......+.|+|..+..
T Consensus 316 Nl~ivL~ar~l~p--~~kIIa~v~~~--~~~~~L~~~GaD~VIsp 356 (393)
T PRK10537 316 NAFVVLAAKEMSS--DVKTVAAVNDS--KNLEKIKRVHPDMIFSP 356 (393)
T ss_pred HHHHHHHHHHhCC--CCcEEEEECCH--HHHHHHHhcCCCEEECH
Confidence 3344555666554 77888776543 45556778899876653
No 466
>TIGR03569 NeuB_NnaB N-acetylneuraminate synthase. This family is a subset of the Pfam model pfam03102 and is believed to include only authentic NeuB N-acetylneuraminate (sialic acid) synthase enzymes. The majority of the genes identified by this model are observed adjacent to both the NeuA and NeuC genes which together effect the biosynthesis of CMP-N-acetylneuraminate from UDP-N-acetylglucosamine.
Probab=39.06 E-value=1.9e+02 Score=25.44 Aligned_cols=102 Identities=19% Similarity=0.265 Sum_probs=64.4
Q ss_pred HHHHHHHHHhhcCCEEEEECCHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCCCCCHHHHHHHHhccCCCCCCcEEEE
Q 026776 41 DRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKKIKDSSALREIPVVIM 120 (233)
Q Consensus 41 ~~~~l~~~L~~~g~~v~~a~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp~~~g~~ll~~Lr~~~~~~~~piIvl 120 (233)
....|.++-++.|..+.+-.-..+.++.+ .. +++-++=+.-.++.-+.+++.+.+. ..|||+=
T Consensus 77 ~~~~L~~~~~~~Gi~~~stpfd~~svd~l-----------~~--~~v~~~KIaS~~~~n~pLL~~~A~~----gkPvilS 139 (329)
T TIGR03569 77 DHRELKEYCESKGIEFLSTPFDLESADFL-----------ED--LGVPRFKIPSGEITNAPLLKKIARF----GKPVILS 139 (329)
T ss_pred HHHHHHHHHHHhCCcEEEEeCCHHHHHHH-----------Hh--cCCCEEEECcccccCHHHHHHHHhc----CCcEEEE
Confidence 34455556667887776655556666766 22 3444555666778889999999865 6699988
Q ss_pred eCCCcHHHHHHHH----HcCCc--eEEe------CCCCHHHH-HHHHHHHhh
Q 026776 121 SSENILARIDRCL----EDGAE--DFIV------KPVKLSDV-KRIKDYLTR 159 (233)
Q Consensus 121 t~~~~~~~~~~al----~~Ga~--dyL~------KP~~~~eL-~~~~~~l~~ 159 (233)
|+-.+.+++..++ +.|.. +++. .|...+++ .+.+..+.+
T Consensus 140 tGmatl~Ei~~Av~~i~~~G~~~~~i~llhC~s~YP~~~~~~nL~~I~~Lk~ 191 (329)
T TIGR03569 140 TGMATLEEIEAAVGVLRDAGTPDSNITLLHCTTEYPAPFEDVNLNAMDTLKE 191 (329)
T ss_pred CCCCCHHHHHHHHHHHHHcCCCcCcEEEEEECCCCCCCcccCCHHHHHHHHH
Confidence 8877766655544 34654 2544 56666665 344444443
No 467
>PRK01231 ppnK inorganic polyphosphate/ATP-NAD kinase; Provisional
Probab=39.00 E-value=2.5e+02 Score=24.15 Aligned_cols=107 Identities=17% Similarity=0.184 Sum_probs=55.8
Q ss_pred EEEEEe--CCH---HHHHHHHHHHhhcCCEEEEECCHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCCCCCHHHHHHH
Q 026776 31 HVLAVD--DSF---VDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKK 105 (233)
Q Consensus 31 ~ILIVd--dd~---~~~~~l~~~L~~~g~~v~~a~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp~~~g~~ll~~ 105 (233)
+|.|+- +.+ ...+.+.++|++.|+++.......+.+..-.....+ ... ....+|+||+ -+.|| .+++.
T Consensus 6 ~v~iv~~~~k~~a~e~~~~i~~~L~~~giev~v~~~~~~~~~~~~~~~~~-~~~-~~~~~d~vi~----~GGDG-t~l~~ 78 (295)
T PRK01231 6 NIGLIGRLGSSSVVETLRRLKDFLLDRGLEVILDEETAEVLPGHGLQTVS-RKL-LGEVCDLVIV----VGGDG-SLLGA 78 (295)
T ss_pred EEEEEecCCCHHHHHHHHHHHHHHHHCCCEEEEecchhhhcCcccccccc-hhh-cccCCCEEEE----EeCcH-HHHHH
Confidence 477762 233 334455666778888887765433221100000000 000 1224788776 36676 24444
Q ss_pred HhccCCCCCCcEEEEeCCCcHHHHHHHHHcCCceEEeCCCCHHHHHHHHHHHhh
Q 026776 106 IKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVKLSDVKRIKDYLTR 159 (233)
Q Consensus 106 Lr~~~~~~~~piIvlt~~~~~~~~~~al~~Ga~dyL~KP~~~~eL~~~~~~l~~ 159 (233)
++... ...+||+-+-. |=.+|| -.++.+++..+++.+.+
T Consensus 79 ~~~~~-~~~~Pvlgin~-------------G~lGFl-~~~~~~~~~~~l~~~~~ 117 (295)
T PRK01231 79 ARALA-RHNVPVLGINR-------------GRLGFL-TDIRPDELEFKLAEVLD 117 (295)
T ss_pred HHHhc-CCCCCEEEEeC-------------Cccccc-ccCCHHHHHHHHHHHHc
Confidence 44332 23788887643 445666 46777888777776654
No 468
>TIGR00512 salvage_mtnA S-methyl-5-thioribose-1-phosphate isomerase. The delineation of this family was based in part on a discussion and neighbor-joining phylogenetic study, by Kyrpides and Woese, of archaeal and other proteins homologous to the alpha, beta, and delta subunits of eukaryotic initiation factor 2B (eIF-2B), a five-subunit molecule that catalyzes GTP recycling for eIF-2. This clade is now recognized to include the methionine salvage pathway enzyme MtnA.
Probab=38.82 E-value=1.8e+02 Score=25.70 Aligned_cols=83 Identities=14% Similarity=0.078 Sum_probs=51.4
Q ss_pred CCCcEEEEEeCCHHHHH--HHHHHHhhcCCEEEEECCHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCC--CC-----C
Q 026776 27 TEEVHVLAVDDSFVDRK--VIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCM--PG-----M 97 (233)
Q Consensus 27 ~~~~~ILIVddd~~~~~--~l~~~L~~~g~~v~~a~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~m--p~-----~ 97 (233)
.+.++|.+.|..|...- .+...|.+.|..++...+..-+.-+ .....|.||+..+- .+ .
T Consensus 178 g~~~~V~v~EsrP~~qG~rlta~~L~~~GI~vtlI~Dsav~~~m------------~~~~vd~VivGAd~v~~nG~v~nk 245 (331)
T TIGR00512 178 GRLEHVYADETRPRLQGARLTAWELVQEGIPATLITDSMAAHLM------------KHGEVDAVIVGADRIAANGDTANK 245 (331)
T ss_pred CCceEEEECCCCchhhHHHHHHHHHHHCCCCEEEEcccHHHHHh------------cccCCCEEEEcccEEecCCCEeeh
Confidence 45689999998886553 3466788899999888775444332 23358888875532 22 2
Q ss_pred CHHHHHHHHhccCCCCCCcEEEEeCCC
Q 026776 98 TGYELLKKIKDSSALREIPVVIMSSEN 124 (233)
Q Consensus 98 ~g~~ll~~Lr~~~~~~~~piIvlt~~~ 124 (233)
-|.-.+..+-+. .++|+++++...
T Consensus 246 iGT~~lA~~Ak~---~~vPfyV~a~~~ 269 (331)
T TIGR00512 246 IGTYQLAVLAKH---HGVPFYVAAPTS 269 (331)
T ss_pred hhHHHHHHHHHH---hCCCEEEecccc
Confidence 243344444222 178998887644
No 469
>cd01825 SGNH_hydrolase_peri1 SGNH_peri1; putative periplasmic member of the SGNH-family of hydrolases, a diverse family of lipases and esterases. The tertiary fold of the enzyme is substantially different from that of the alpha/beta hydrolase family and unique among all known hydrolases; its active site closely resembles the Ser-His-Asp(Glu) triad found in other serine hydrolases.
Probab=38.64 E-value=75 Score=24.43 Aligned_cols=41 Identities=17% Similarity=0.353 Sum_probs=26.2
Q ss_pred CCCcccEEEEcCCCCCCC-----H-------HHHHHHHhccCCCCCCcEEEEeCC
Q 026776 81 DGLKVDLIITDYCMPGMT-----G-------YELLKKIKDSSALREIPVVIMSSE 123 (233)
Q Consensus 81 ~~~~~DlvllD~~mp~~~-----g-------~~ll~~Lr~~~~~~~~piIvlt~~ 123 (233)
...+||+|++-+...+.. . -.+++.+++..+ ..+|++++..
T Consensus 53 ~~~~pd~Vii~~G~ND~~~~~~~~~~~~~~~~~li~~i~~~~~--~~~iv~~~~~ 105 (189)
T cd01825 53 AALPPDLVILSYGTNEAFNKQLNASEYRQQLREFIKRLRQILP--NASILLVGPP 105 (189)
T ss_pred hhCCCCEEEEECCCcccccCCCCHHHHHHHHHHHHHHHHHHCC--CCeEEEEcCC
Confidence 356799999988666431 1 135566666533 7788887754
No 470
>cd01575 PBP1_GntR Ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators. This group represents the ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of GntR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding,
Probab=38.62 E-value=2e+02 Score=23.08 Aligned_cols=10 Identities=10% Similarity=0.338 Sum_probs=4.1
Q ss_pred HHHHHHHHhc
Q 026776 99 GYELLKKIKD 108 (233)
Q Consensus 99 g~~ll~~Lr~ 108 (233)
|..+++.|.+
T Consensus 104 ~~~~~~~l~~ 113 (268)
T cd01575 104 GRAMARHLLA 113 (268)
T ss_pred HHHHHHHHHH
Confidence 3334444443
No 471
>PF01380 SIS: SIS domain SIS domain web page.; InterPro: IPR001347 The SIS (Sugar ISomerase) domain is a phosphosugar-binding domain [] found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars possibly by binding to the end-product of the pathway.; GO: 0005529 sugar binding, 0005975 carbohydrate metabolic process; PDB: 3TBF_C 2V4M_A 2ZJ4_A 2ZJ3_A 3FKJ_A 3ODP_A 3EUA_H 1VIV_A 1M3S_B 1TZB_A ....
Probab=38.60 E-value=1e+02 Score=22.14 Aligned_cols=100 Identities=17% Similarity=0.085 Sum_probs=56.4
Q ss_pred EEEEEeC--CHHHHHHHHHHHhhcCCEEEEECCHHHHHHH-hhhhhhhhccCCCCCccc-EEEEcCCCCCCCHHHHHHHH
Q 026776 31 HVLAVDD--SFVDRKVIERLLTISSCKVTAVDSGRRALQF-LGLDEEQSINGFDGLKVD-LIITDYCMPGMTGYELLKKI 106 (233)
Q Consensus 31 ~ILIVdd--d~~~~~~l~~~L~~~g~~v~~a~~~~~al~~-l~~~~~~~~~~~~~~~~D-lvllD~~mp~~~g~~ll~~L 106 (233)
+|.++.- .......+...|.+.|..+.......+.... +. .-.+=| +|++...=...+-.+.++.+
T Consensus 7 ~i~i~G~G~s~~~A~~~~~~l~~~~~~~~~~~~~~~~~~~~~~----------~~~~~d~vi~is~sg~~~~~~~~~~~a 76 (131)
T PF01380_consen 7 RIYIYGSGSSYGVAQYAALKLQKLGRIVVISYEAGEFFHGPLE----------NLDPDDLVIIISYSGETRELIELLRFA 76 (131)
T ss_dssp EEEEEESTHHHHHHHHHHHHHHHHHSSEEEEEEHHHHHTTGGG----------GCSTTEEEEEEESSSTTHHHHHHHHHH
T ss_pred EEEEEEcchHHHHHHHHHHHHHHhcCcceeccchHHHhhhhcc----------cccccceeEeeeccccchhhhhhhHHH
Confidence 5666543 4556666677777777666666666554332 21 111224 44444332233467777777
Q ss_pred hccCCCCCCcEEEEeCCCcHHHHHHHHHcCCceEEeCCCCHHH
Q 026776 107 KDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVKLSD 149 (233)
Q Consensus 107 r~~~~~~~~piIvlt~~~~~~~~~~al~~Ga~dyL~KP~~~~e 149 (233)
++. ..++|++|......... .+|..|.-|...+.
T Consensus 77 k~~----g~~vi~iT~~~~~~l~~-----~ad~~l~~~~~~~~ 110 (131)
T PF01380_consen 77 KER----GAPVILITSNSESPLAR-----LADIVLYIPTGEES 110 (131)
T ss_dssp HHT----TSEEEEEESSTTSHHHH-----HSSEEEEEESSCGS
T ss_pred Hhc----CCeEEEEeCCCCCchhh-----hCCEEEEecCCCcc
Confidence 765 67899999877654432 24666665554433
No 472
>cd08563 GDPD_TtGDE_like Glycerophosphodiester phosphodiesterase domain of Thermoanaerobacter tengcongensis and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Thermoanaerobacter tengcongensis glycerophosphodiester phosphodiesterase (TtGDE, EC 3.1.4.46) and its uncharacterized homologs. Members in this family show high sequence similarity to Escherichia coli GP-GDE, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols. Despite the fact that most of GDPD family members exist as the monomer, TtGDE can function as a dimeric unit. Its catalytic mechanism is based on the general base-acid catalysis, which is similar to that of phosphoinositide-specific phospholipases C (PI-PLCs, EC 3.1.4.11). A divalent metal cation is required for the enzyme activity of TtGDE.
Probab=38.59 E-value=2.1e+02 Score=23.14 Aligned_cols=37 Identities=22% Similarity=0.387 Sum_probs=26.4
Q ss_pred HHHHHHhccCCCCCCcEEEEeCCCcHHHHHHHHHcCCceEEe
Q 026776 101 ELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIV 142 (233)
Q Consensus 101 ~ll~~Lr~~~~~~~~piIvlt~~~~~~~~~~al~~Ga~dyL~ 142 (233)
++++.+++. ..++.+.|-+ +.+...++++.|+++++.
T Consensus 191 ~~i~~~~~~----g~~v~~Wtvn-~~~~~~~~~~~GVdgi~T 227 (230)
T cd08563 191 EVVEELKKR----GIPVRLWTVN-EEEDMKRLKDLGVDGIIT 227 (230)
T ss_pred HHHHHHHHC----CCEEEEEecC-CHHHHHHHHHCCCCEEeC
Confidence 456666553 5677777754 567778889999998875
No 473
>cd04732 HisA HisA. Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.
Probab=38.33 E-value=50 Score=26.91 Aligned_cols=53 Identities=30% Similarity=0.437 Sum_probs=37.6
Q ss_pred EEEEcCCCCCC---CHHHHHHHHhccCCCCCCcEEEEeCCCcHHHHHHHHHcCCceEEe
Q 026776 87 LIITDYCMPGM---TGYELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIV 142 (233)
Q Consensus 87 lvllD~~mp~~---~g~~ll~~Lr~~~~~~~~piIvlt~~~~~~~~~~al~~Ga~dyL~ 142 (233)
+++.|+..-+. -.+++++.+++.. .+|+++-.+-.+.+.+.++++.|+++++.
T Consensus 163 iii~~~~~~g~~~g~~~~~i~~i~~~~---~ipvi~~GGi~~~~di~~~~~~Ga~gv~v 218 (234)
T cd04732 163 IIYTDISRDGTLSGPNFELYKELAAAT---GIPVIASGGVSSLDDIKALKELGVAGVIV 218 (234)
T ss_pred EEEEeecCCCccCCCCHHHHHHHHHhc---CCCEEEecCCCCHHHHHHHHHCCCCEEEE
Confidence 45566533221 2367888887642 68888887777888888999999999875
No 474
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=38.26 E-value=1.4e+02 Score=23.87 Aligned_cols=110 Identities=12% Similarity=0.049 Sum_probs=54.5
Q ss_pred HHHHHHHHHHHhhcCCEEEEECC---HHHHH-HHhhhhhhhhccCCCCCcccEEEEcCCCCCCCHHHHHHHHhc---cCC
Q 026776 39 FVDRKVIERLLTISSCKVTAVDS---GRRAL-QFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKKIKD---SSA 111 (233)
Q Consensus 39 ~~~~~~l~~~L~~~g~~v~~a~~---~~~al-~~l~~~~~~~~~~~~~~~~DlvllD~~mp~~~g~~ll~~Lr~---~~~ 111 (233)
....+.|+.+-+..|..+..+.+ ..+.+ +.++.- ....+|+||+|..=-...-.+.+.++++ ...
T Consensus 42 ~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~l~~~--------~~~~~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~ 113 (196)
T PF00448_consen 42 IGAVEQLKTYAEILGVPFYVARTESDPAEIAREALEKF--------RKKGYDLVLIDTAGRSPRDEELLEELKKLLEALN 113 (196)
T ss_dssp THHHHHHHHHHHHHTEEEEESSTTSCHHHHHHHHHHHH--------HHTTSSEEEEEE-SSSSTHHHHHHHHHHHHHHHS
T ss_pred ccHHHHHHHHHHHhccccchhhcchhhHHHHHHHHHHH--------hhcCCCEEEEecCCcchhhHHHHHHHHHHhhhcC
Confidence 34566677777778887776653 22222 222110 2345899999984222223344444433 211
Q ss_pred CCCCcEEEEeCCCcHHH---HHHHHH-cCCceE-EeCCCCHHHHHHHHHHH
Q 026776 112 LREIPVVIMSSENILAR---IDRCLE-DGAEDF-IVKPVKLSDVKRIKDYL 157 (233)
Q Consensus 112 ~~~~piIvlt~~~~~~~---~~~al~-~Ga~dy-L~KP~~~~eL~~~~~~l 157 (233)
+.-.++++++....+. +....+ .+.+++ +.|=-....+-.++..+
T Consensus 114 -~~~~~LVlsa~~~~~~~~~~~~~~~~~~~~~lIlTKlDet~~~G~~l~~~ 163 (196)
T PF00448_consen 114 -PDEVHLVLSATMGQEDLEQALAFYEAFGIDGLILTKLDETARLGALLSLA 163 (196)
T ss_dssp -SSEEEEEEEGGGGGHHHHHHHHHHHHSSTCEEEEESTTSSSTTHHHHHHH
T ss_pred -CccceEEEecccChHHHHHHHHHhhcccCceEEEEeecCCCCcccceeHH
Confidence 2345566666544333 333333 356766 45544333444444443
No 475
>PF02844 GARS_N: Phosphoribosylglycinamide synthetase, N domain; InterPro: IPR020562 Phosphoribosylglycinamide synthetase (6.3.4.13 from EC) (GARS) (phosphoribosylamine glycine ligase) [] catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by phosphoribosylglycinamide synthetase is the ATP-dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide: ATP + 5-phosphoribosylamine + glycine = ADP + Pi + 5'-phosphoribosylglycinamide In bacteria, GARS is a monofunctional enzyme (encoded by the purD gene). In yeast, GARS is part of a bifunctional enzyme (encoded by the ADE5/7 gene) in conjunction with phosphoribosylformylglycinamidine cyclo-ligase (AIRS) (IPR000728 from INTERPRO). In higher eukaryotes, GARS is part of a trifunctional enzyme in conjunction with AIRS (IPR000728 from INTERPRO) and with phosphoribosylglycinamide formyltransferase (GART) (), forming GARS-AIRS-GART. This entry represents the N-domain, which is related to the N-terminal domain of biotin carboxylase/carbamoyl phosphate synthetase (IPR005481 from INTERPRO).; GO: 0004637 phosphoribosylamine-glycine ligase activity, 0009113 purine base biosynthetic process; PDB: 3MJF_A 2XD4_A 2XCL_A 2IP4_A 2YW2_B 2YYA_A 3LP8_A 1VKZ_A 2YS6_A 2YRX_A ....
Probab=38.26 E-value=74 Score=22.82 Aligned_cols=30 Identities=17% Similarity=0.178 Sum_probs=17.3
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhcCC-EEEEE
Q 026776 30 VHVLAVDDSFVDRKVIERLLTISSC-KVTAV 59 (233)
Q Consensus 30 ~~ILIVddd~~~~~~l~~~L~~~g~-~v~~a 59 (233)
||||||.+--..-.....+.++... +++++
T Consensus 1 MkVLviGsGgREHAia~~l~~s~~v~~v~~a 31 (100)
T PF02844_consen 1 MKVLVIGSGGREHAIAWKLSQSPSVEEVYVA 31 (100)
T ss_dssp EEEEEEESSHHHHHHHHHHTTCTTEEEEEEE
T ss_pred CEEEEECCCHHHHHHHHHHhcCCCCCEEEEe
Confidence 6899999886555444444444333 44443
No 476
>PF00977 His_biosynth: Histidine biosynthesis protein; InterPro: IPR006062 Histidine is formed by several complex and distinct biochemical reactions catalysed by eight enzymes. Proteins involved in steps 4 and 6 of the histidine biosynthesis pathway are contained in one family. These enzymes are called His6 and His7 in eukaryotes and HisA and HisF in prokaryotes. HisA is a phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (5.3.1.16 from EC), involved in the fourth step of histidine biosynthesis. The bacterial HisF protein is a cyclase which catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate during the sixth step of histidine biosynthesis. The yeast His7 protein is a bifunctional protein which catalyzes an amido-transferase reaction that generates imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide. The latter is the ribonucleotide used for purine biosynthesis. The enzyme also catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate, and is involved in the fifth and sixth steps in histidine biosynthesis.; GO: 0000105 histidine biosynthetic process; PDB: 2VEP_A 2X30_A 1VZW_A 2WJZ_A 2LLE_A 2A0N_A 1THF_D 1GPW_E 1VH7_A 1KA9_F ....
Probab=38.25 E-value=1e+02 Score=25.30 Aligned_cols=54 Identities=28% Similarity=0.464 Sum_probs=39.6
Q ss_pred cEEEEcCCCCCC-C--HHHHHHHHhccCCCCCCcEEEEeCCCcHHHHHHHHHcCCceEEe
Q 026776 86 DLIITDYCMPGM-T--GYELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIV 142 (233)
Q Consensus 86 DlvllD~~mp~~-~--g~~ll~~Lr~~~~~~~~piIvlt~~~~~~~~~~al~~Ga~dyL~ 142 (233)
.+|++|+.--+. . .+++++.+++.. ..|+|+--+-.+.++..++.+.|+++.+.
T Consensus 163 ~ii~tdi~~dGt~~G~d~~~~~~l~~~~---~~~viasGGv~~~~Dl~~l~~~G~~gviv 219 (229)
T PF00977_consen 163 EIILTDIDRDGTMQGPDLELLKQLAEAV---NIPVIASGGVRSLEDLRELKKAGIDGVIV 219 (229)
T ss_dssp EEEEEETTTTTTSSS--HHHHHHHHHHH---SSEEEEESS--SHHHHHHHHHTTECEEEE
T ss_pred EEEEeeccccCCcCCCCHHHHHHHHHHc---CCCEEEecCCCCHHHHHHHHHCCCcEEEE
Confidence 588999865542 2 357788887653 78898877777888999999999998875
No 477
>cd06389 PBP1_iGluR_AMPA_GluR2 N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR2 subunit of the AMPA receptor. N-terminal leucine/isoleucine/valine-binding protein (LIVBP)-like domain of the GluR2 subunit of the AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid) receptor. The AMPA receptor is a member of the glutamate-receptor ion channels (iGluRs) which are the major mediators of excitatory synaptic transmission in the central nervous system. AMPA receptors are composed of four types of subunits (GluR1, GluR2, GluR3, and GluR4) which combine to form a tetramer and play an important role in mediating the rapid excitatory synaptic current. Furthermore, this N-terminal domain of the iGluRs has homology with LIVBP, a bacterial periplasmic binding protein, as well as with the structurally related glutamate-binding domain of the G-protein-coupled metabotropic receptors (mGluRs).
Probab=38.23 E-value=2.8e+02 Score=24.39 Aligned_cols=29 Identities=10% Similarity=0.079 Sum_probs=20.8
Q ss_pred CCCcccEEEEcCCCCCCCHHHHHHHHhccCC
Q 026776 81 DGLKVDLIITDYCMPGMTGYELLKKIKDSSA 111 (233)
Q Consensus 81 ~~~~~DlvllD~~mp~~~g~~ll~~Lr~~~~ 111 (233)
+...+++||+|.. ..+...++++.++.+.
T Consensus 173 k~~~~~~Iil~~~--~~~~~~il~qa~~~gm 201 (370)
T cd06389 173 ENKKERRVILDCE--RDKVNDIVDQVITIGK 201 (370)
T ss_pred ccccceEEEEECC--HHHHHHHHHHHHHhCc
Confidence 4557899999864 3456778888887665
No 478
>cd03820 GT1_amsD_like This family is most closely related to the GT1 family of glycosyltransferases. AmSD in Erwinia amylovora has been shown to be involved in the biosynthesis of amylovoran, the acidic exopolysaccharide acting as a virulence factor. This enzyme may be responsible for the formation of galactose alpha-1,6 linkages in amylovoran.
Probab=38.19 E-value=2.2e+02 Score=23.25 Aligned_cols=65 Identities=14% Similarity=0.160 Sum_probs=41.2
Q ss_pred ccEEEEcCCCCCCCHHHHHHHHhccCCCCCCcEEEEeCCCcHHHHHHHHHcCCceEEeCCCCHHHHHHHHHHHh
Q 026776 85 VDLIITDYCMPGMTGYELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVKLSDVKRIKDYLT 158 (233)
Q Consensus 85 ~DlvllD~~mp~~~g~~ll~~Lr~~~~~~~~piIvlt~~~~~~~~~~al~~Ga~dyL~KP~~~~eL~~~~~~l~ 158 (233)
.|+++.-... +.-|..+++.+.. .+|+|+........ .....|..+++.++.+.+++.+.+..+.
T Consensus 253 ad~~i~ps~~-e~~~~~~~Ea~a~-----G~Pvi~~~~~~~~~---~~~~~~~~g~~~~~~~~~~~~~~i~~ll 317 (348)
T cd03820 253 ASIFVLTSRF-EGFPMVLLEAMAF-----GLPVISFDCPTGPS---EIIEDGVNGLLVPNGDVEALAEALLRLM 317 (348)
T ss_pred CCEEEeCccc-cccCHHHHHHHHc-----CCCEEEecCCCchH---hhhccCcceEEeCCCCHHHHHHHHHHHH
Confidence 5777765443 3336667777653 67877543222222 3445666889999999999987776664
No 479
>TIGR02990 ectoine_eutA ectoine utilization protein EutA. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti and Silicibacter pomeroyi. It is missing from two other species with the other ectoine transport and utilization genes: Pseudomonas putida and Agrobacterium tumefaciens.
Probab=38.17 E-value=2.4e+02 Score=23.53 Aligned_cols=76 Identities=8% Similarity=0.075 Sum_probs=44.9
Q ss_pred cEEEEEeCC-HHHHHHHHHHHhhcCCEEEEEC-------------CHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCC
Q 026776 30 VHVLAVDDS-FVDRKVIERLLTISSCKVTAVD-------------SGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMP 95 (233)
Q Consensus 30 ~~ILIVddd-~~~~~~l~~~L~~~g~~v~~a~-------------~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp 95 (233)
-||-|+-.- +...+.+.++|+..|++|.... +.+...+.+... ....+|.|++- .-
T Consensus 121 ~RIalvTPY~~~v~~~~~~~l~~~G~eV~~~~~~~~~~~~~ia~i~p~~i~~~~~~~--------~~~~aDAifis--CT 190 (239)
T TIGR02990 121 RRISLLTPYTPETSRPMAQYFAVRGFEIVNFTCLGLTDDREMARISPDCIVEAALAA--------FDPDADALFLS--CT 190 (239)
T ss_pred CEEEEECCCcHHHHHHHHHHHHhCCcEEeeeeccCCCCCceeeecCHHHHHHHHHHh--------cCCCCCEEEEe--CC
Confidence 467777764 5566778889999999887652 222233333110 23356777765 34
Q ss_pred CCCHHHHHHHHhccCCCCCCcEE
Q 026776 96 GMTGYELLKKIKDSSALREIPVV 118 (233)
Q Consensus 96 ~~~g~~ll~~Lr~~~~~~~~piI 118 (233)
++..++++..|.+.- ..|||
T Consensus 191 nLrt~~vi~~lE~~l---GkPVl 210 (239)
T TIGR02990 191 ALRAATCAQRIEQAI---GKPVV 210 (239)
T ss_pred CchhHHHHHHHHHHH---CCCEE
Confidence 566777777775432 45553
No 480
>PLN02889 oxo-acid-lyase/anthranilate synthase
Probab=38.05 E-value=1.1e+02 Score=30.96 Aligned_cols=33 Identities=21% Similarity=0.091 Sum_probs=26.7
Q ss_pred CcEEEEEeCCHHHHHHHHHHHhhc-CCEEEEECC
Q 026776 29 EVHVLAVDDSFVDRKVIERLLTIS-SCKVTAVDS 61 (233)
Q Consensus 29 ~~~ILIVddd~~~~~~l~~~L~~~-g~~v~~a~~ 61 (233)
.++||+||...-+-..|.++|+.. |..+..+.+
T Consensus 81 ~~~iLlIDnyDSfTyNL~~~L~~~~g~~~~Vv~n 114 (918)
T PLN02889 81 FVRTLLIDNYDSYTYNIYQELSIVNGVPPVVVRN 114 (918)
T ss_pred cceEEEEeCCCchHHHHHHHHHHhcCCCEEEEeC
Confidence 379999999888888899999887 877665543
No 481
>PRK09776 putative diguanylate cyclase; Provisional
Probab=37.98 E-value=1.5e+02 Score=30.08 Aligned_cols=96 Identities=15% Similarity=0.237 Sum_probs=58.6
Q ss_pred HHHHHhhcCCEEEE--ECCHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCC-----CCCHHHHHHHHhccCCCCCCcE
Q 026776 45 IERLLTISSCKVTA--VDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMP-----GMTGYELLKKIKDSSALREIPV 117 (233)
Q Consensus 45 l~~~L~~~g~~v~~--a~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp-----~~~g~~ll~~Lr~~~~~~~~pi 117 (233)
.-+.|++.|+.+.. +.++...+..+ ...++|.|=+|..+- +.+...+++.+......-++.+
T Consensus 979 ~~~~l~~~G~~~~lddfg~g~~~~~~l-----------~~~~~d~iKid~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 1047 (1092)
T PRK09776 979 LVQKLRLAGCRVVLSDFGRGLSSFNYL-----------KAFMADYLKLDGELVANLHGNLMDEMLISIIQGHAQRLGMKT 1047 (1092)
T ss_pred HHHHHHHCCcEEEEcCCCCCchHHHHH-----------HhCCCCEEEECHHHHHhHhcChhhHHHHHHHHHHHHHcCCcE
Confidence 34456778887765 55666666666 456799999995432 1223445555543222113333
Q ss_pred EEEeCCCcHHHHHHHHHcCCc----eEEeCCCCHHHHHH
Q 026776 118 VIMSSENILARIDRCLEDGAE----DFIVKPVKLSDVKR 152 (233)
Q Consensus 118 Ivlt~~~~~~~~~~al~~Ga~----dyL~KP~~~~eL~~ 152 (233)
| ..+-.+.+....+.+.|++ .|+.||...+++..
T Consensus 1048 i-aegVEt~~~~~~l~~~g~~~~QG~~~~~P~~~~~~~~ 1085 (1092)
T PRK09776 1048 I-AGPVELPLVLDTLSGIGVDLAYGYAIARPQPLDLLLN 1085 (1092)
T ss_pred E-ecccCCHHHHHHHHHcCCCEEeccccCCCCcHHHHHh
Confidence 3 3344567777788899984 35889988877644
No 482
>PRK05581 ribulose-phosphate 3-epimerase; Validated
Probab=37.90 E-value=2.1e+02 Score=22.86 Aligned_cols=59 Identities=20% Similarity=0.364 Sum_probs=33.6
Q ss_pred ccEEEEcCCCCCCC-------HHHHHHHHhccCCCCCC-cEEEEeCCCcHHHHHHHHHcCCceEEeC
Q 026776 85 VDLIITDYCMPGMT-------GYELLKKIKDSSALREI-PVVIMSSENILARIDRCLEDGAEDFIVK 143 (233)
Q Consensus 85 ~DlvllD~~mp~~~-------g~~ll~~Lr~~~~~~~~-piIvlt~~~~~~~~~~al~~Ga~dyL~K 143 (233)
.|.++++..-|+.+ +++.++++++......+ +.|.+.+.-+.+.+.++.+.|+|.++.-
T Consensus 132 ~d~i~~~~~~~g~tg~~~~~~~~~~i~~~~~~~~~~~~~~~i~v~GGI~~~nv~~l~~~GaD~vvvg 198 (220)
T PRK05581 132 LDLVLLMSVNPGFGGQKFIPEVLEKIRELRKLIDERGLDILIEVDGGINADNIKECAEAGADVFVAG 198 (220)
T ss_pred CCEEEEEEECCCCCcccccHHHHHHHHHHHHHHHhcCCCceEEEECCCCHHHHHHHHHcCCCEEEEC
Confidence 57676665435443 33455555443211112 4455655556677888888999977554
No 483
>COG2247 LytB Putative cell wall-binding domain [Cell envelope biogenesis, outer membrane]
Probab=37.85 E-value=2.8e+02 Score=24.42 Aligned_cols=33 Identities=15% Similarity=0.077 Sum_probs=28.2
Q ss_pred CCCcEEEEEeCCHHHHHHHHHHHhhcCCEEEEE
Q 026776 27 TEEVHVLAVDDSFVDRKVIERLLTISSCKVTAV 59 (233)
Q Consensus 27 ~~~~~ILIVddd~~~~~~l~~~L~~~g~~v~~a 59 (233)
..+-+||||.....+-...+..|++.|+.|...
T Consensus 74 lnpd~VLIIGGp~AVs~~yE~~Lks~GitV~Ri 106 (337)
T COG2247 74 LNPDLVLIIGGPIAVSPNYENALKSLGITVKRI 106 (337)
T ss_pred hCCceEEEECCCCcCChhHHHHHHhCCcEEEEe
Confidence 456789999999999999999999999977653
No 484
>COG3172 NadR Predicted ATPase/kinase involved in NAD metabolism [Coenzyme metabolism]
Probab=37.79 E-value=2.1e+02 Score=22.81 Aligned_cols=23 Identities=13% Similarity=0.156 Sum_probs=18.9
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhc
Q 026776 30 VHVLAVDDSFVDRKVIERLLTIS 52 (233)
Q Consensus 30 ~~ILIVddd~~~~~~l~~~L~~~ 52 (233)
-+|+++|-|...-.....++...
T Consensus 79 ~~v~fiDTD~itT~~~~~~y~gr 101 (187)
T COG3172 79 NKVAFIDTDFLTTQAFCKKYEGR 101 (187)
T ss_pred CceEEEeccHHHHHHHHHHHccc
Confidence 48999999999888888777543
No 485
>PRK00103 rRNA large subunit methyltransferase; Provisional
Probab=37.71 E-value=1.9e+02 Score=22.41 Aligned_cols=80 Identities=14% Similarity=0.134 Sum_probs=46.6
Q ss_pred CcEEEEEeC--CHHHHHHHHHHHhhcC----CEEEEECCHHH-----HHHHhhhhhhhhccCCCCCcccEEEEcCCCCCC
Q 026776 29 EVHVLAVDD--SFVDRKVIERLLTISS----CKVTAVDSGRR-----ALQFLGLDEEQSINGFDGLKVDLIITDYCMPGM 97 (233)
Q Consensus 29 ~~~ILIVdd--d~~~~~~l~~~L~~~g----~~v~~a~~~~~-----al~~l~~~~~~~~~~~~~~~~DlvllD~~mp~~ 97 (233)
+++|+.|.- +...++.+.++++..+ +++....+... .-......++.....+.... -+|++|.+=-.+
T Consensus 2 ki~I~~vGk~k~~~~~~~i~~Y~kRl~~~~~~e~~el~~~~~~~~~~~~~~~~~E~~~il~~l~~~~-~~i~LDe~Gk~~ 80 (157)
T PRK00103 2 KITIIAVGKLKPKWLKDGIAEYLKRFPRYLKLELIEIPDEKRPKNADAEQIKAKEGERILAALPKGA-RVIALDERGKQL 80 (157)
T ss_pred eEEEEEEeccCcHHHHHHHHHHHHhcCccCCceEEEecCCcCccccCHHHHHHHHHHHHHhhCCCCC-EEEEEcCCCCcC
Confidence 478888884 5777899999998765 35544433220 00000001111111111111 288999988889
Q ss_pred CHHHHHHHHhcc
Q 026776 98 TGYELLKKIKDS 109 (233)
Q Consensus 98 ~g~~ll~~Lr~~ 109 (233)
+..++.+.|...
T Consensus 81 sS~~fA~~l~~~ 92 (157)
T PRK00103 81 SSEEFAQELERW 92 (157)
T ss_pred CHHHHHHHHHHH
Confidence 999999999764
No 486
>PRK11572 copper homeostasis protein CutC; Provisional
Probab=37.38 E-value=2.5e+02 Score=23.65 Aligned_cols=92 Identities=21% Similarity=0.309 Sum_probs=59.0
Q ss_pred CCHHHHHHHHHHHhhc-CCEEEE------ECCHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCC-CCCHHHHHHHHhc
Q 026776 37 DSFVDRKVIERLLTIS-SCKVTA------VDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMP-GMTGYELLKKIKD 108 (233)
Q Consensus 37 dd~~~~~~l~~~L~~~-g~~v~~------a~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp-~~~g~~ll~~Lr~ 108 (233)
|.....+.++++++.. +..++. +.+..++++.+ ....++=||..=.-+ -.+|++.++.|.+
T Consensus 98 dg~vD~~~~~~Li~~a~~~~vTFHRAfD~~~d~~~al~~l-----------~~lG~~rILTSGg~~~a~~g~~~L~~lv~ 166 (248)
T PRK11572 98 DGHVDMPRMRKIMAAAGPLAVTFHRAFDMCANPLNALKQL-----------ADLGVARILTSGQQQDAEQGLSLIMELIA 166 (248)
T ss_pred CCCcCHHHHHHHHHHhcCCceEEechhhccCCHHHHHHHH-----------HHcCCCEEECCCCCCCHHHHHHHHHHHHH
Confidence 4466677777777654 344433 45778888877 344688888765544 3578999999876
Q ss_pred cCCCCCCcEEEEeCCCcHHHHHHHHHcCCceEEe
Q 026776 109 SSALREIPVVIMSSENILARIDRCLEDGAEDFIV 142 (233)
Q Consensus 109 ~~~~~~~piIvlt~~~~~~~~~~al~~Ga~dyL~ 142 (233)
... . .+|+..+.-..+.+......|+..|-.
T Consensus 167 ~a~--~-~~Im~GgGV~~~Nv~~l~~tG~~~~H~ 197 (248)
T PRK11572 167 ASD--G-PIIMAGAGVRLSNLHKFLDAGVREVHS 197 (248)
T ss_pred hcC--C-CEEEeCCCCCHHHHHHHHHcCCCEEee
Confidence 543 3 344444444555555556788888863
No 487
>PF01993 MTD: methylene-5,6,7,8-tetrahydromethanopterin dehydrogenase; InterPro: IPR002844 This archaeal enzyme family is involved in formation of methane from carbon dioxide 1.5.99.9 from EC. The enzyme requires coenzyme F420 [].; GO: 0008901 ferredoxin hydrogenase activity, 0015948 methanogenesis, 0055114 oxidation-reduction process; PDB: 1U6I_D 3IQF_G 1QV9_C 3IQE_F 1U6J_G 3IQZ_D 1U6K_B.
Probab=37.06 E-value=58 Score=27.40 Aligned_cols=61 Identities=15% Similarity=0.227 Sum_probs=38.4
Q ss_pred CCcccEEEEcCCCCCCCHHHHHHHHhccCCCCCCcEEEEeCCCcHHHHHHHHHcCCceEEeCCCC
Q 026776 82 GLKVDLIITDYCMPGMTGYELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVK 146 (233)
Q Consensus 82 ~~~~DlvllD~~mp~~~g~~ll~~Lr~~~~~~~~piIvlt~~~~~~~~~~al~~Ga~dyL~KP~~ 146 (233)
.+.||++|+=---+..-|-.-.+++-... .+|.|+++....... .++++..-.+|+.-+.+
T Consensus 57 ~~~pdf~I~isPN~~~PGP~~ARE~l~~~---~iP~IvI~D~p~~k~-kd~l~~~g~GYIivk~D 117 (276)
T PF01993_consen 57 EWDPDFVIVISPNAAAPGPTKAREMLSAK---GIPCIVISDAPTKKA-KDALEEEGFGYIIVKAD 117 (276)
T ss_dssp HH--SEEEEE-S-TTSHHHHHHHHHHHHS---SS-EEEEEEGGGGGG-HHHHHHTT-EEEEETTS
T ss_pred hhCCCEEEEECCCCCCCCcHHHHHHHHhC---CCCEEEEcCCCchhh-HHHHHhcCCcEEEEecC
Confidence 45799888765555666777777776432 889999988665443 56777777788776655
No 488
>cd04722 TIM_phosphate_binding TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure. Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate comes either from the substrate, as in the case of inosine monophosphate dehydrogenase (IMPDH), or from ribulose-5-phosphate 3-epimerase (RPE) or from cofactors, like FMN.
Probab=36.92 E-value=1.5e+02 Score=22.58 Aligned_cols=56 Identities=27% Similarity=0.186 Sum_probs=37.6
Q ss_pred cccEEEEcCCCCCCCH-------HHHHHHHhccCCCCCCcEEEEeCCCcHHHHHHHHHcCCceEEe
Q 026776 84 KVDLIITDYCMPGMTG-------YELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIV 142 (233)
Q Consensus 84 ~~DlvllD~~mp~~~g-------~~ll~~Lr~~~~~~~~piIvlt~~~~~~~~~~al~~Ga~dyL~ 142 (233)
..|.+.++...+...+ ...+..++.. ..+|+++..+-...+.+.++++.|++.+..
T Consensus 136 g~d~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~pi~~~GGi~~~~~~~~~~~~Gad~v~v 198 (200)
T cd04722 136 GVDEVGLGNGGGGGGGRDAVPIADLLLILAKRG---SKVPVIAGGGINDPEDAAEALALGADGVIV 198 (200)
T ss_pred CCCEEEEcCCcCCCCCccCchhHHHHHHHHHhc---CCCCEEEECCCCCHHHHHHHHHhCCCEEEe
Confidence 4688888776664332 2334444432 378888877777768888999999998764
No 489
>PF13941 MutL: MutL protein
Probab=36.90 E-value=3.5e+02 Score=25.08 Aligned_cols=106 Identities=15% Similarity=0.211 Sum_probs=62.1
Q ss_pred CCCcEEEEEeCCH-HHHHHHHHHHhhcCCEEEEE---CCHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCCCCC---H
Q 026776 27 TEEVHVLAVDDSF-VDRKVIERLLTISSCKVTAV---DSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMT---G 99 (233)
Q Consensus 27 ~~~~~ILIVddd~-~~~~~l~~~L~~~g~~v~~a---~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp~~~---g 99 (233)
...+|+.++.=-+ ...+.-++.-...|-.|... .-.++-++.+ ...+||+||+-=.-.+.+ .
T Consensus 74 aGGLrmvv~Glv~~~Ta~AAk~AAlgAGA~V~~v~s~~l~~~~l~~i-----------~~~~PDiILLaGGtDgG~~~~i 142 (457)
T PF13941_consen 74 AGGLRMVVIGLVPDLTAEAAKRAALGAGARVLQVYSYELTEEDLEEI-----------REIRPDIILLAGGTDGGNKEVI 142 (457)
T ss_pred CCcceEEEEecCHHHHHHHHHHHHhcCCcEEEEEeccCCCHHHHHHH-----------hccCCCEEEEeCCccCCchHHH
Confidence 4567877776443 33444444444556544443 3334445555 567899999953333333 2
Q ss_pred HHHHHHHhccCCCCCCcEEEEeCCCcHHHHHHHHH-cCCceEEeCCC
Q 026776 100 YELLKKIKDSSALREIPVVIMSSENILARIDRCLE-DGAEDFIVKPV 145 (233)
Q Consensus 100 ~~ll~~Lr~~~~~~~~piIvlt~~~~~~~~~~al~-~Ga~dyL~KP~ 145 (233)
+...+.|..... .+|||+-......+.+.+.+. .|.+-|+..-+
T Consensus 143 l~nA~~La~~~~--~~pVIyAGN~~a~~~v~~il~~~~~~~~~~~NV 187 (457)
T PF13941_consen 143 LHNAEMLAEANL--RIPVIYAGNKAAQDEVEEILEKAGKEVVITENV 187 (457)
T ss_pred HHHHHHHHhCCC--CCcEEEECCHHHHHHHHHHHHhCCCCEEEeCCC
Confidence 455666665543 778776655556677778887 66666666543
No 490
>cd06279 PBP1_LacI_like_3 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=36.85 E-value=2.2e+02 Score=23.44 Aligned_cols=15 Identities=7% Similarity=0.266 Sum_probs=7.0
Q ss_pred HHHHHhhcCCEEEEE
Q 026776 45 IERLLTISSCKVTAV 59 (233)
Q Consensus 45 l~~~L~~~g~~v~~a 59 (233)
+.+.+++.||.+..+
T Consensus 26 i~~~a~~~g~~~~~~ 40 (283)
T cd06279 26 VAEVLDAAGVNLLLL 40 (283)
T ss_pred HHHHHHHCCCEEEEe
Confidence 344444455554443
No 491
>PRK04128 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=36.77 E-value=1.5e+02 Score=24.43 Aligned_cols=52 Identities=19% Similarity=0.216 Sum_probs=38.5
Q ss_pred cEEEEcCCCCCC-CHHHHHHHHhccCCCCCCcEEEEeCCCcHHHHHHHHHcCCceEEe
Q 026776 86 DLIITDYCMPGM-TGYELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIV 142 (233)
Q Consensus 86 DlvllD~~mp~~-~g~~ll~~Lr~~~~~~~~piIvlt~~~~~~~~~~al~~Ga~dyL~ 142 (233)
.+|++|+.--++ .|++ .+.+... .+|+|+-.+-.+.++..++.+.|+++.+.
T Consensus 158 ~ii~t~i~~dGt~~G~d---~l~~~~~--~~pviasGGv~~~~Dl~~l~~~g~~gviv 210 (228)
T PRK04128 158 RFIYTSIERDGTLTGIE---EIERFWG--DEEFIYAGGVSSAEDVKKLAEIGFSGVII 210 (228)
T ss_pred EEEEEeccchhcccCHH---HHHHhcC--CCCEEEECCCCCHHHHHHHHHCCCCEEEE
Confidence 589999976654 6766 3333222 78999888778888888889999998765
No 492
>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=36.73 E-value=1.4e+02 Score=25.87 Aligned_cols=35 Identities=20% Similarity=0.261 Sum_probs=30.9
Q ss_pred CCCCcEEEEEeCCHHHHHHHHHHHhhcCCEEEEEC
Q 026776 26 DTEEVHVLAVDDSFVDRKVIERLLTISSCKVTAVD 60 (233)
Q Consensus 26 ~~~~~~ILIVddd~~~~~~l~~~L~~~g~~v~~a~ 60 (233)
+.+..+|.||.....+..-+...|...|+.|+.+.
T Consensus 155 ~~~Gk~V~viGrs~~mG~PmA~~L~~~g~tVtv~~ 189 (296)
T PRK14188 155 DLSGLNAVVIGRSNLVGKPMAQLLLAANATVTIAH 189 (296)
T ss_pred CCCCCEEEEEcCCcchHHHHHHHHHhCCCEEEEEC
Confidence 34678999999999999999999999999998885
No 493
>COG0113 HemB Delta-aminolevulinic acid dehydratase [Coenzyme metabolism]
Probab=36.65 E-value=1.5e+02 Score=25.80 Aligned_cols=63 Identities=21% Similarity=0.395 Sum_probs=44.8
Q ss_pred CHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCCCCCHHHHHHHHhccCCCCCCcEEEEeCCCcHHHHHHHHHcCC
Q 026776 61 SGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGA 137 (233)
Q Consensus 61 ~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp~~~g~~ll~~Lr~~~~~~~~piIvlt~~~~~~~~~~al~~Ga 137 (233)
|..||+..+..+- .+..|+|++- |.+-=+++++++++.. .+|+..+--++....+..|...|-
T Consensus 231 N~~EAlrE~~lD~--------~EGAD~lMVK---Pal~YLDIi~~vk~~~---~lP~~AYqVSGEYaMikAAa~nGw 293 (330)
T COG0113 231 NRREALREIELDI--------EEGADILMVK---PALPYLDIIRRVKEEF---NLPVAAYQVSGEYAMIKAAAQNGW 293 (330)
T ss_pred CHHHHHHHHHhhH--------hcCCcEEEEc---CCchHHHHHHHHHHhc---CCCeEEEecchHHHHHHHHHHcCC
Confidence 5667776665442 3357899886 6777888999999864 689998877776666666666653
No 494
>PRK07455 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=36.61 E-value=2.2e+02 Score=22.65 Aligned_cols=89 Identities=12% Similarity=0.080 Sum_probs=50.2
Q ss_pred HhhcC-CEEEEECCHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCCCCCHHHHHHHHhccCCCCCCcEEEEeCCCcHH
Q 026776 49 LTISS-CKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKKIKDSSALREIPVVIMSSENILA 127 (233)
Q Consensus 49 L~~~g-~~v~~a~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp~~~g~~ll~~Lr~~~~~~~~piIvlt~~~~~~ 127 (233)
|...+ +-|....+.+++++.+..- ... .+=++-+.+...+..++++.+++..+ .+. +-...--..+
T Consensus 9 l~~~~~~~v~r~~~~~~~~~~~~~~--------~~~--Gv~~vqlr~k~~~~~e~~~~~~~~~~--~~~-~g~gtvl~~d 75 (187)
T PRK07455 9 LQQHRAIAVIRAPDLELGLQMAEAV--------AAG--GMRLIEITWNSDQPAELISQLREKLP--ECI-IGTGTILTLE 75 (187)
T ss_pred HHhCCEEEEEEcCCHHHHHHHHHHH--------HHC--CCCEEEEeCCCCCHHHHHHHHHHhCC--CcE-EeEEEEEcHH
Confidence 33444 3555566777777665321 111 23344556667788888888876543 221 1111111236
Q ss_pred HHHHHHHcCCceEEeCCCCHHHH
Q 026776 128 RIDRCLEDGAEDFIVKPVKLSDV 150 (233)
Q Consensus 128 ~~~~al~~Ga~dyL~KP~~~~eL 150 (233)
....|++.|++.++.--++.+.+
T Consensus 76 ~~~~A~~~gAdgv~~p~~~~~~~ 98 (187)
T PRK07455 76 DLEEAIAAGAQFCFTPHVDPELI 98 (187)
T ss_pred HHHHHHHcCCCEEECCCCCHHHH
Confidence 77789999998777766665444
No 495
>COG1411 Uncharacterized protein related to proFAR isomerase (HisA) [General function prediction only]
Probab=36.56 E-value=2.1e+02 Score=23.53 Aligned_cols=60 Identities=28% Similarity=0.393 Sum_probs=42.8
Q ss_pred CCcccEEEEcCCCCC-CCH--HHHHHHHhccCCCCCCcEEEEeCCCcHHHHHHHHHcCCceEEeCC
Q 026776 82 GLKVDLIITDYCMPG-MTG--YELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKP 144 (233)
Q Consensus 82 ~~~~DlvllD~~mp~-~~g--~~ll~~Lr~~~~~~~~piIvlt~~~~~~~~~~al~~Ga~dyL~KP 144 (233)
...+++|++|+.--+ +.| .+++..+.... .-|+++-.+-.-.+....+...|+.+.|.-.
T Consensus 149 ~~~~~lIvLDi~aVGt~~G~~~E~l~~~~~~s---~~pVllGGGV~g~Edlel~~~~Gv~gvLvaT 211 (229)
T COG1411 149 RRDPGLIVLDIGAVGTKSGPDYELLTKVLELS---EHPVLLGGGVGGMEDLELLLGMGVSGVLVAT 211 (229)
T ss_pred cCCCCeEEEEccccccccCCCHHHHHHHHHhc---cCceeecCCcCcHHHHHHHhcCCCceeeehh
Confidence 346899999997543 333 67787777643 5567766666667778888889999998643
No 496
>PLN02645 phosphoglycolate phosphatase
Probab=36.51 E-value=1.2e+02 Score=26.15 Aligned_cols=50 Identities=14% Similarity=0.006 Sum_probs=33.4
Q ss_pred cccEEEEcCC-------CCCCCHHHHHHHHhccCCCCCCcEEEEeCCC---cHHHHHHHHHcCC
Q 026776 84 KVDLIITDYC-------MPGMTGYELLKKIKDSSALREIPVVIMSSEN---ILARIDRCLEDGA 137 (233)
Q Consensus 84 ~~DlvllD~~-------mp~~~g~~ll~~Lr~~~~~~~~piIvlt~~~---~~~~~~~al~~Ga 137 (233)
.+|++++|+. -+--...+++++||+. ..+++++|+.. ......+..+.|.
T Consensus 27 ~~~~~~~D~DGtl~~~~~~~~ga~e~l~~lr~~----g~~~~~~TN~~~~~~~~~~~~l~~lGi 86 (311)
T PLN02645 27 SVETFIFDCDGVIWKGDKLIEGVPETLDMLRSM----GKKLVFVTNNSTKSRAQYGKKFESLGL 86 (311)
T ss_pred hCCEEEEeCcCCeEeCCccCcCHHHHHHHHHHC----CCEEEEEeCCCCCCHHHHHHHHHHCCC
Confidence 4778888863 1223457899999875 67899999876 3344445556775
No 497
>cd08562 GDPD_EcUgpQ_like Glycerophosphodiester phosphodiesterase domain in Escherichia coli cytosolic glycerophosphodiester phosphodiesterase UgpQ and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in Escherichia coli cytosolic glycerophosphodiester phosphodiesterase (GP-GDE, EC 3.1.4.46), UgpQ, and similar proteins. GP-GDE plays an essential role in the metabolic pathway of E. coli. It catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols, which are major sources of carbon and phosphate. E. coli possesses two major G3P uptake systems: Glp and Ugp, which contain genes coding for two distinct GP-GDEs. UgpQ gene from the E. coli ugp operon codes for a cytosolic phosphodiesterase GlpQ, which is the prototype of this family. Various glycerophosphodiesters, such as glycerophosphocholine (GPC), glycerophosphoethanolanmine (GPE), glycerophosphoglycerol (GPG)
Probab=36.44 E-value=2.3e+02 Score=22.80 Aligned_cols=37 Identities=24% Similarity=0.330 Sum_probs=23.3
Q ss_pred HHHHHHhccCCCCCCcEEEEeCCCcHHHHHHHHHcCCceEEe
Q 026776 101 ELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIV 142 (233)
Q Consensus 101 ~ll~~Lr~~~~~~~~piIvlt~~~~~~~~~~al~~Ga~dyL~ 142 (233)
++++.+++. ...+.+.|-+ +.+....+++.|++++++
T Consensus 190 ~~v~~~~~~----g~~v~~wTvn-~~~~~~~~~~~gVdgiiT 226 (229)
T cd08562 190 EQVKALKDA----GYKLLVYTVN-DPARAAELLEWGVDAIFT 226 (229)
T ss_pred HHHHHHHHC----CCEEEEEeCC-CHHHHHHHHHCCCCEEEc
Confidence 456666553 4566666654 345666777888887764
No 498
>cd06272 PBP1_hexuronate_repressor_like Ligand-binding domain of DNA transcription repressor for the hexuronate utilization operon from Bacillus species and its close homologs from other bacteria, all of which are a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor for the hexuronate utilization operon from Bacillus species and its close homologs from other bacteria, all of which are a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor
Probab=36.29 E-value=2.1e+02 Score=23.01 Aligned_cols=63 Identities=14% Similarity=0.010 Sum_probs=0.0
Q ss_pred HHHHHHHHHHhhcCCEEEEEC--CHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCCCCCHHHHHHHHhccCCCCCCcE
Q 026776 40 VDRKVIERLLTISSCKVTAVD--SGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKKIKDSSALREIPV 117 (233)
Q Consensus 40 ~~~~~l~~~L~~~g~~v~~a~--~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp~~~g~~ll~~Lr~~~~~~~~pi 117 (233)
.+...+++.+++.||.+.... +..+.++.+ ....+|-||+ .+....-..++.++.. .+|+
T Consensus 16 ~~~~gi~~~~~~~g~~~~~~~~~~~~~~~~~l-----------~~~~vdgii~---~~~~~~~~~~~~~~~~----~ipv 77 (261)
T cd06272 16 ELVTGINQAISKNGYNMNVSITPSLAEAEDLF-----------KENRFDGVII---FGESASDVEYLYKIKL----AIPV 77 (261)
T ss_pred HHHHHHHHHHHHcCCEEEEEecccHHHHHHHH-----------HHcCcCEEEE---eCCCCChHHHHHHHHc----CCCE
Q ss_pred EEE
Q 026776 118 VIM 120 (233)
Q Consensus 118 Ivl 120 (233)
|++
T Consensus 78 V~~ 80 (261)
T cd06272 78 VSY 80 (261)
T ss_pred EEE
No 499
>PRK06124 gluconate 5-dehydrogenase; Provisional
Probab=36.24 E-value=2.1e+02 Score=23.10 Aligned_cols=69 Identities=13% Similarity=-0.045 Sum_probs=0.0
Q ss_pred cCCCCCCCCCcEEEEEeCCHHHHHHHHHHHhhcCCEEEEECCHHHHHHHhhhhhhhhccCCCCCcccEEEEcCC
Q 026776 20 FDLSPSDTEEVHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYC 93 (233)
Q Consensus 20 ~~~~~~~~~~~~ILIVddd~~~~~~l~~~L~~~g~~v~~a~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~ 93 (233)
.++.....+..+|+|..-.......+...|.+.|+.|..+....+.++.+...-++ .......+.+|+.
T Consensus 2 ~~~~~~~~~~k~ilItGas~~IG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~-----~~~~~~~~~~Dl~ 70 (256)
T PRK06124 2 SILQRFSLAGQVALVTGSARGLGFEIARALAGAGAHVLVNGRNAATLEAAVAALRA-----AGGAAEALAFDIA 70 (256)
T ss_pred CcccccCCCCCEEEEECCCchHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHh-----cCCceEEEEccCC
No 500
>COG0118 HisH Glutamine amidotransferase [Amino acid transport and metabolism]
Probab=36.21 E-value=1.3e+02 Score=24.54 Aligned_cols=45 Identities=16% Similarity=0.171 Sum_probs=0.0
Q ss_pred CcEEEEEeCCHHHHHHHHHHHhhcCCEEEEECCHHHHHHHhhhhhhhhccCCCCCcccEEEE
Q 026776 29 EVHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIIT 90 (233)
Q Consensus 29 ~~~ILIVddd~~~~~~l~~~L~~~g~~v~~a~~~~~al~~l~~~~~~~~~~~~~~~~Dlvll 90 (233)
.++|.|||=.--+...+.+.|+..|+++....+.++..+ .|-||+
T Consensus 1 m~~i~IIDyg~GNL~Sv~~Aler~G~~~~vs~d~~~i~~-----------------AD~liL 45 (204)
T COG0118 1 MMMVAIIDYGSGNLRSVKKALERLGAEVVVSRDPEEILK-----------------ADKLIL 45 (204)
T ss_pred CCEEEEEEcCcchHHHHHHHHHHcCCeeEEecCHHHHhh-----------------CCEEEe
Done!