Query 026776
Match_columns 233
No_of_seqs 278 out of 1639
Neff 8.5
Searched_HMMs 29240
Date Mon Mar 25 21:53:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026776.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/026776hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3to5_A CHEY homolog; alpha(5)b 100.0 1.6E-28 5.4E-33 186.8 15.5 122 27-159 10-132 (134)
2 3gl9_A Response regulator; bet 99.9 2E-23 6.8E-28 154.7 18.0 118 30-158 3-120 (122)
3 3t6k_A Response regulator rece 99.9 1.5E-23 5.2E-28 158.2 16.0 122 28-160 3-124 (136)
4 2lpm_A Two-component response 99.9 8.2E-26 2.8E-30 169.2 1.1 114 27-158 6-120 (123)
5 3h1g_A Chemotaxis protein CHEY 99.9 2.6E-22 9E-27 149.7 16.4 122 28-159 4-126 (129)
6 2r25_B Osmosensing histidine p 99.9 3E-22 1E-26 150.5 16.1 124 29-159 2-126 (133)
7 3f6p_A Transcriptional regulat 99.9 2.9E-22 9.9E-27 147.8 15.7 115 30-158 3-117 (120)
8 3gt7_A Sensor protein; structu 99.9 7E-22 2.4E-26 152.1 18.2 124 27-161 5-128 (154)
9 3rqi_A Response regulator prot 99.9 7.5E-23 2.6E-27 162.4 12.7 119 26-157 4-122 (184)
10 3m6m_D Sensory/regulatory prot 99.9 4.5E-22 1.5E-26 151.4 15.7 122 27-159 12-135 (143)
11 1dbw_A Transcriptional regulat 99.9 1.7E-21 5.7E-26 144.5 17.7 119 28-159 2-120 (126)
12 1i3c_A Response regulator RCP1 99.9 1.9E-21 6.6E-26 148.7 18.3 130 27-160 6-137 (149)
13 3kto_A Response regulator rece 99.9 4.8E-22 1.7E-26 149.6 13.8 121 28-161 5-127 (136)
14 1jbe_A Chemotaxis protein CHEY 99.9 3.8E-21 1.3E-25 142.6 17.8 121 28-159 3-124 (128)
15 3crn_A Response regulator rece 99.9 1.8E-21 6E-26 145.8 16.0 118 29-159 3-120 (132)
16 3heb_A Response regulator rece 99.9 3.2E-21 1.1E-25 147.6 17.7 133 28-162 3-137 (152)
17 1p6q_A CHEY2; chemotaxis, sign 99.9 1.3E-21 4.4E-26 145.4 14.7 121 28-159 5-126 (129)
18 2pl1_A Transcriptional regulat 99.9 3.3E-21 1.1E-25 141.4 16.8 117 30-159 1-117 (121)
19 3hv2_A Response regulator/HD d 99.9 1.8E-21 6.2E-26 149.3 15.9 122 27-161 12-134 (153)
20 3kht_A Response regulator; PSI 99.9 4.1E-21 1.4E-25 145.6 17.4 123 28-161 4-129 (144)
21 3grc_A Sensor protein, kinase; 99.9 6.7E-22 2.3E-26 149.1 12.9 124 27-161 4-128 (140)
22 3luf_A Two-component system re 99.9 1.1E-21 3.8E-26 164.4 15.4 126 28-163 123-248 (259)
23 3eod_A Protein HNR; response r 99.9 2.9E-21 1E-25 143.7 16.0 120 27-159 5-125 (130)
24 3jte_A Response regulator rece 99.9 3.7E-21 1.3E-25 145.5 16.4 123 28-161 2-124 (143)
25 3lua_A Response regulator rece 99.9 1.3E-21 4.5E-26 147.6 13.6 122 28-160 3-127 (140)
26 1srr_A SPO0F, sporulation resp 99.9 3.2E-21 1.1E-25 142.4 14.9 117 29-158 3-119 (124)
27 3r0j_A Possible two component 99.9 3.1E-21 1.1E-25 160.2 16.3 122 26-160 20-141 (250)
28 2zay_A Response regulator rece 99.9 3.3E-21 1.1E-25 146.4 14.8 125 26-161 5-129 (147)
29 3i42_A Response regulator rece 99.9 1.5E-21 5E-26 144.8 12.5 120 28-159 2-121 (127)
30 4e7p_A Response regulator; DNA 99.9 9.6E-21 3.3E-25 144.8 17.4 122 26-160 17-140 (150)
31 1xhf_A DYE resistance, aerobic 99.9 8.1E-21 2.8E-25 139.9 16.3 118 28-159 2-119 (123)
32 3snk_A Response regulator CHEY 99.9 3.2E-22 1.1E-26 150.3 8.7 119 27-158 12-131 (135)
33 2qzj_A Two-component response 99.9 4.4E-21 1.5E-25 144.6 15.0 119 29-161 4-122 (136)
34 1zgz_A Torcad operon transcrip 99.9 1.1E-20 3.7E-25 139.0 16.7 117 30-160 3-119 (122)
35 1k68_A Phytochrome response re 99.9 1.8E-20 6.2E-25 140.3 18.2 129 29-161 2-132 (140)
36 3hdg_A Uncharacterized protein 99.9 3.2E-21 1.1E-25 144.8 13.9 121 28-161 6-126 (137)
37 3b2n_A Uncharacterized protein 99.9 5.8E-21 2E-25 143.1 15.3 118 29-159 3-122 (133)
38 3cnb_A DNA-binding response re 99.9 9.9E-21 3.4E-25 142.6 16.6 123 27-160 6-130 (143)
39 1tmy_A CHEY protein, TMY; chem 99.9 5.3E-21 1.8E-25 140.3 14.5 115 30-157 3-118 (120)
40 3cfy_A Putative LUXO repressor 99.9 3.9E-21 1.3E-25 145.0 14.2 118 30-160 5-122 (137)
41 1mb3_A Cell division response 99.9 4.4E-21 1.5E-25 141.3 14.0 118 30-158 2-119 (124)
42 3mm4_A Histidine kinase homolo 99.9 5E-21 1.7E-25 154.9 15.3 133 26-160 58-196 (206)
43 3hdv_A Response regulator; PSI 99.9 1.2E-20 4E-25 141.6 16.2 122 28-160 6-127 (136)
44 3hzh_A Chemotaxis response reg 99.9 5.7E-21 1.9E-25 147.4 14.5 120 26-158 33-155 (157)
45 3lte_A Response regulator; str 99.9 1.1E-20 3.7E-25 140.8 15.4 121 27-159 4-124 (132)
46 1k66_A Phytochrome response re 99.9 2E-20 6.9E-25 141.7 17.1 132 27-161 4-139 (149)
47 2rjn_A Response regulator rece 99.9 1.7E-20 6E-25 143.8 16.7 121 27-160 5-126 (154)
48 3c3m_A Response regulator rece 99.9 7.5E-21 2.6E-25 143.4 14.4 120 29-159 3-122 (138)
49 3nhm_A Response regulator; pro 99.9 7.6E-21 2.6E-25 141.9 14.2 121 28-161 3-123 (133)
50 1dcf_A ETR1 protein; beta-alph 99.9 2.6E-20 9E-25 139.8 16.7 121 27-159 5-128 (136)
51 3f6c_A Positive transcription 99.9 3.5E-21 1.2E-25 143.9 11.6 119 29-160 1-120 (134)
52 4dad_A Putative pilus assembly 99.9 4.5E-21 1.5E-25 145.7 12.2 126 23-160 14-141 (146)
53 3ilh_A Two component response 99.9 2.5E-20 8.6E-25 140.9 16.0 126 28-159 8-138 (146)
54 2jba_A Phosphate regulon trans 99.9 5.3E-21 1.8E-25 141.4 11.7 119 30-159 3-121 (127)
55 2a9o_A Response regulator; ess 99.9 2.9E-20 1E-24 135.9 15.5 116 30-159 2-117 (120)
56 1mvo_A PHOP response regulator 99.9 1.5E-20 5.1E-25 140.8 14.1 118 30-160 4-121 (136)
57 2ayx_A Sensor kinase protein R 99.9 6.5E-21 2.2E-25 159.1 13.2 122 26-160 126-247 (254)
58 3n0r_A Response regulator; sig 99.8 1.2E-21 4.1E-26 166.7 8.7 116 29-160 160-277 (286)
59 3h5i_A Response regulator/sens 99.8 6.5E-21 2.2E-25 144.1 11.8 121 28-161 4-125 (140)
60 1yio_A Response regulatory pro 99.8 1.5E-20 5E-25 151.3 14.4 119 28-159 3-121 (208)
61 1dz3_A Stage 0 sporulation pro 99.8 1.8E-20 6.1E-25 139.6 13.8 118 30-159 3-122 (130)
62 2qxy_A Response regulator; reg 99.8 4E-20 1.4E-24 139.6 15.7 119 28-160 3-121 (142)
63 3eul_A Possible nitrate/nitrit 99.8 4.6E-20 1.6E-24 141.1 15.7 122 26-160 12-135 (152)
64 2qr3_A Two-component system re 99.8 3.9E-20 1.3E-24 139.0 15.1 119 28-159 2-125 (140)
65 3n53_A Response regulator rece 99.8 6.2E-21 2.1E-25 143.9 10.6 121 28-160 2-122 (140)
66 3q9s_A DNA-binding response re 99.8 1.7E-20 5.7E-25 156.1 14.2 120 27-160 35-154 (249)
67 1qkk_A DCTD, C4-dicarboxylate 99.8 1.7E-20 5.9E-25 144.0 13.2 120 28-160 2-121 (155)
68 1a04_A Nitrate/nitrite respons 99.8 4.4E-20 1.5E-24 149.4 15.7 120 28-160 4-125 (215)
69 3cg4_A Response regulator rece 99.8 1.1E-20 3.7E-25 142.6 11.3 124 27-161 5-128 (142)
70 3dzd_A Transcriptional regulat 99.8 9.8E-21 3.4E-25 166.5 12.5 118 31-161 2-119 (368)
71 3cg0_A Response regulator rece 99.8 5.1E-20 1.7E-24 138.4 14.7 121 27-161 7-129 (140)
72 1zh2_A KDP operon transcriptio 99.8 5.7E-20 2E-24 134.6 14.3 116 30-159 2-117 (121)
73 3kcn_A Adenylate cyclase homol 99.8 9E-20 3.1E-24 139.5 15.8 121 28-161 3-124 (151)
74 3cz5_A Two-component response 99.8 1.1E-19 3.6E-24 139.3 16.0 119 28-159 4-124 (153)
75 3a10_A Response regulator; pho 99.8 3.9E-20 1.3E-24 134.8 12.0 113 30-157 2-114 (116)
76 3cu5_A Two component transcrip 99.8 3E-20 1E-24 140.8 11.8 118 30-160 3-123 (141)
77 3eqz_A Response regulator; str 99.8 3.7E-20 1.3E-24 138.2 12.1 119 28-160 2-125 (135)
78 2qvg_A Two component response 99.8 1.2E-19 4.1E-24 137.0 14.7 125 28-157 6-132 (143)
79 1s8n_A Putative antiterminator 99.8 6.5E-20 2.2E-24 147.5 13.6 117 29-159 13-130 (205)
80 3eq2_A Probable two-component 99.8 3.9E-20 1.3E-24 163.4 13.0 118 28-158 4-122 (394)
81 1kgs_A DRRD, DNA binding respo 99.8 1.1E-19 3.7E-24 147.8 14.7 118 30-160 3-120 (225)
82 2gkg_A Response regulator homo 99.8 9.2E-20 3.2E-24 134.2 12.9 119 29-159 5-124 (127)
83 2jk1_A HUPR, hydrogenase trans 99.8 2.6E-19 8.9E-24 134.9 14.5 117 30-160 2-119 (139)
84 1ys7_A Transcriptional regulat 99.8 6.1E-20 2.1E-24 150.0 11.7 122 27-161 5-126 (233)
85 1w25_A Stalked-cell differenti 99.8 2E-19 6.8E-24 161.6 15.6 119 30-159 2-120 (459)
86 2qsj_A DNA-binding response re 99.8 1.4E-19 4.7E-24 138.6 12.2 120 28-160 2-124 (154)
87 1ny5_A Transcriptional regulat 99.8 1.7E-19 5.9E-24 159.5 14.5 117 30-159 1-117 (387)
88 2qv0_A Protein MRKE; structura 99.8 6.9E-19 2.4E-23 132.9 15.6 119 28-161 8-128 (143)
89 2rdm_A Response regulator rece 99.8 7.3E-19 2.5E-23 130.7 14.4 119 27-160 3-123 (132)
90 3kyj_B CHEY6 protein, putative 99.8 1.8E-19 6.2E-24 136.7 10.5 112 26-151 10-126 (145)
91 3klo_A Transcriptional regulat 99.8 5.3E-20 1.8E-24 150.3 7.4 121 27-160 5-129 (225)
92 2oqr_A Sensory transduction pr 99.8 6.4E-19 2.2E-23 143.8 13.5 117 30-160 5-121 (230)
93 3bre_A Probable two-component 99.8 5.6E-19 1.9E-23 153.5 13.1 119 28-157 17-136 (358)
94 3c97_A Signal transduction his 99.8 4.9E-19 1.7E-23 133.5 11.2 117 29-159 10-129 (140)
95 2pln_A HP1043, response regula 99.8 4.1E-18 1.4E-22 127.8 15.2 116 26-159 15-132 (137)
96 2j48_A Two-component sensor ki 99.8 8.3E-19 2.8E-23 127.1 10.8 113 30-156 2-114 (119)
97 2gwr_A DNA-binding response re 99.8 8E-19 2.7E-23 144.4 12.0 118 29-160 5-122 (238)
98 3c3w_A Two component transcrip 99.8 1.6E-19 5.4E-24 147.7 7.5 118 30-160 2-121 (225)
99 3t8y_A CHEB, chemotaxis respon 99.8 2.9E-18 9.8E-23 133.3 14.2 110 27-150 23-136 (164)
100 3sy8_A ROCR; TIM barrel phosph 99.8 5.8E-19 2E-23 156.5 11.5 120 28-160 2-128 (400)
101 1dc7_A NTRC, nitrogen regulati 99.8 1.4E-20 4.9E-25 138.2 0.1 119 28-159 2-120 (124)
102 1p2f_A Response regulator; DRR 99.8 4.5E-18 1.5E-22 138.0 14.8 115 30-160 3-117 (220)
103 2b4a_A BH3024; flavodoxin-like 99.8 1.5E-18 5.2E-23 130.3 10.0 116 26-158 12-129 (138)
104 1qo0_D AMIR; binding protein, 99.8 3.7E-18 1.3E-22 136.2 11.0 113 28-158 11-123 (196)
105 2hqr_A Putative transcriptiona 99.8 2E-17 6.7E-22 134.4 15.1 114 30-160 1-115 (223)
106 1a2o_A CHEB methylesterase; ba 99.7 5E-17 1.7E-21 141.9 15.1 106 28-147 2-111 (349)
107 3luf_A Two-component system re 99.7 1.7E-17 5.7E-22 138.9 10.3 103 29-147 4-107 (259)
108 2vyc_A Biodegradative arginine 99.7 5.8E-17 2E-21 154.3 11.0 117 30-159 1-133 (755)
109 1w25_A Stalked-cell differenti 99.2 4.7E-10 1.6E-14 100.4 16.2 117 28-157 151-267 (459)
110 3cwo_X Beta/alpha-barrel prote 99.1 2.5E-11 8.5E-16 98.6 4.3 88 54-154 6-95 (237)
111 3q7r_A Transcriptional regulat 97.7 0.00058 2E-08 47.8 10.7 107 29-160 12-118 (121)
112 2ayx_A Sensor kinase protein R 97.6 0.00034 1.2E-08 57.4 9.4 96 26-157 8-103 (254)
113 3n75_A LDC, lysine decarboxyla 97.6 5.8E-05 2E-09 71.3 5.2 94 42-150 19-112 (715)
114 2yxb_A Coenzyme B12-dependent 97.0 0.018 6.2E-07 44.0 12.7 117 28-157 17-142 (161)
115 3cwo_X Beta/alpha-barrel prote 96.3 0.0057 2E-07 48.6 5.9 66 85-153 145-219 (237)
116 1ccw_A Protein (glutamate muta 95.8 0.14 4.9E-06 37.8 10.9 110 30-151 4-127 (137)
117 1wv2_A Thiazole moeity, thiazo 94.7 0.3 1E-05 40.1 10.3 82 46-143 128-216 (265)
118 1y80_A Predicted cobalamin bin 94.6 0.22 7.4E-06 39.4 9.2 100 29-142 88-196 (210)
119 3ezx_A MMCP 1, monomethylamine 94.1 0.23 7.8E-06 39.7 8.4 101 28-142 91-202 (215)
120 2i2x_B MTAC, methyltransferase 93.7 0.75 2.6E-05 37.6 10.9 101 28-144 122-231 (258)
121 2xij_A Methylmalonyl-COA mutas 93.1 1.2 4E-05 42.2 12.4 113 28-153 603-724 (762)
122 1req_A Methylmalonyl-COA mutas 92.7 1.2 4E-05 42.0 11.7 117 28-157 595-721 (727)
123 1xrs_B D-lysine 5,6-aminomutas 92.7 1.4 4.8E-05 36.2 11.0 110 28-151 119-249 (262)
124 3fkq_A NTRC-like two-domain pr 92.6 0.25 8.5E-06 42.6 6.7 58 28-96 20-80 (373)
125 3kp1_A D-ornithine aminomutase 92.1 1.2 4.1E-05 41.3 10.6 117 28-158 601-734 (763)
126 3q58_A N-acetylmannosamine-6-p 91.7 2.1 7.1E-05 34.3 10.8 87 41-143 117-210 (229)
127 2htm_A Thiazole biosynthesis p 91.6 0.33 1.1E-05 40.0 5.9 81 48-143 119-207 (268)
128 1r8j_A KAIA; circadian clock p 90.7 3.4 0.00011 33.9 10.9 83 28-123 8-90 (289)
129 2ekc_A AQ_1548, tryptophan syn 88.8 1.4 4.9E-05 36.0 7.6 60 99-160 81-146 (262)
130 3igs_A N-acetylmannosamine-6-p 88.2 4.3 0.00015 32.5 10.0 87 41-143 117-210 (232)
131 1geq_A Tryptophan synthase alp 87.9 2.9 9.9E-05 33.4 8.9 57 99-158 68-130 (248)
132 1qop_A Tryptophan synthase alp 86.7 2.1 7.3E-05 35.0 7.5 60 99-160 81-146 (268)
133 3vnd_A TSA, tryptophan synthas 86.3 1 3.6E-05 37.1 5.4 58 100-159 83-146 (267)
134 3nav_A Tryptophan synthase alp 86.2 1.2 4.2E-05 36.7 5.8 60 98-159 83-148 (271)
135 3bul_A Methionine synthase; tr 84.1 4.5 0.00015 37.1 8.9 104 28-144 97-212 (579)
136 3ec7_A Putative dehydrogenase; 83.9 4.9 0.00017 34.1 8.7 116 22-160 16-137 (357)
137 3abi_A Putative uncharacterize 83.7 5.1 0.00017 34.0 8.8 108 10-148 5-112 (365)
138 2v5j_A 2,4-dihydroxyhept-2-ENE 83.4 18 0.00061 29.9 11.8 75 82-157 58-133 (287)
139 3ffs_A Inosine-5-monophosphate 83.1 19 0.00064 31.3 12.1 101 30-142 157-274 (400)
140 1ujp_A Tryptophan synthase alp 82.9 1.9 6.3E-05 35.6 5.4 58 100-160 80-143 (271)
141 2vws_A YFAU, 2-keto-3-deoxy su 81.8 19 0.00066 29.2 11.9 75 82-157 37-112 (267)
142 3rht_A (gatase1)-like protein; 81.2 0.65 2.2E-05 38.2 2.0 78 29-123 4-88 (259)
143 3l9w_A Glutathione-regulated p 81.0 14 0.00049 32.1 10.7 55 84-143 68-122 (413)
144 3qz6_A HPCH/HPAI aldolase; str 79.9 9.8 0.00034 30.9 8.8 74 83-157 36-110 (261)
145 3fwz_A Inner membrane protein 79.8 14 0.00049 26.4 10.9 107 30-142 8-124 (140)
146 3rc1_A Sugar 3-ketoreductase; 79.7 5.5 0.00019 33.6 7.5 111 22-159 20-138 (350)
147 4e5v_A Putative THUA-like prot 79.6 2.1 7.1E-05 35.5 4.6 77 28-121 3-93 (281)
148 2gek_A Phosphatidylinositol ma 79.1 22 0.00074 29.6 11.1 65 85-158 283-347 (406)
149 3l4e_A Uncharacterized peptida 78.2 12 0.00042 29.2 8.6 64 29-109 27-100 (206)
150 3o63_A Probable thiamine-phosp 76.1 14 0.00049 29.7 8.6 71 58-142 141-218 (243)
151 1z0s_A Probable inorganic poly 76.0 2.4 8.1E-05 35.1 3.9 98 24-158 24-121 (278)
152 1yad_A Regulatory protein TENI 75.2 20 0.0007 27.8 9.2 69 58-142 116-191 (221)
153 3qja_A IGPS, indole-3-glycerol 74.5 31 0.0011 28.2 10.4 99 31-143 138-242 (272)
154 2lci_A Protein OR36; structura 74.4 11 0.00039 25.7 6.3 27 31-57 53-79 (134)
155 4h08_A Putative hydrolase; GDS 74.3 19 0.00064 27.0 8.6 88 25-122 16-119 (200)
156 1xm3_A Thiazole biosynthesis p 73.8 6.7 0.00023 32.0 6.1 42 99-143 166-207 (264)
157 4ew6_A D-galactose-1-dehydroge 73.5 19 0.00064 30.0 9.1 109 21-159 17-130 (330)
158 2gjl_A Hypothetical protein PA 73.3 38 0.0013 28.1 11.2 79 49-142 114-200 (328)
159 1dxe_A 2-dehydro-3-deoxy-galac 73.2 34 0.0012 27.4 12.3 76 81-157 37-113 (256)
160 2oo3_A Protein involved in cat 72.6 7.2 0.00025 32.3 6.0 71 29-108 113-184 (283)
161 4fo4_A Inosine 5'-monophosphat 72.4 45 0.0015 28.5 11.9 102 30-143 121-240 (366)
162 2xci_A KDO-transferase, 3-deox 72.1 13 0.00043 31.6 7.8 68 85-160 278-346 (374)
163 3llv_A Exopolyphosphatase-rela 71.7 24 0.00081 24.9 9.7 106 30-142 7-122 (141)
164 3usb_A Inosine-5'-monophosphat 71.6 56 0.0019 29.2 12.1 45 99-143 344-388 (511)
165 1q7r_A Predicted amidotransfer 71.6 6.4 0.00022 30.9 5.3 51 11-62 5-55 (219)
166 4had_A Probable oxidoreductase 71.1 14 0.00049 30.7 7.8 108 27-159 21-135 (350)
167 3tqv_A Nicotinate-nucleotide p 70.7 18 0.00061 30.0 8.0 70 85-158 169-240 (287)
168 3u3x_A Oxidoreductase; structu 70.7 24 0.00081 29.8 9.1 108 27-159 24-137 (361)
169 4e38_A Keto-hydroxyglutarate-a 70.1 18 0.00062 28.9 7.7 93 46-152 28-121 (232)
170 1zh8_A Oxidoreductase; TM0312, 69.8 36 0.0012 28.3 10.0 46 114-159 82-131 (340)
171 1xi3_A Thiamine phosphate pyro 68.9 27 0.00093 26.6 8.5 55 84-142 128-189 (215)
172 1fy2_A Aspartyl dipeptidase; s 67.6 29 0.00099 27.4 8.5 63 28-110 30-101 (229)
173 3f4w_A Putative hexulose 6 pho 67.0 10 0.00034 29.3 5.6 86 43-142 93-186 (211)
174 3ic5_A Putative saccharopine d 66.8 26 0.00088 23.4 8.3 90 29-140 5-97 (118)
175 3lab_A Putative KDPG (2-keto-3 66.3 33 0.0011 27.1 8.4 52 96-151 48-99 (217)
176 3l0g_A Nicotinate-nucleotide p 66.2 20 0.00069 29.9 7.4 70 85-158 178-249 (300)
177 2bfw_A GLGA glycogen synthase; 65.6 38 0.0013 25.0 11.8 106 29-159 70-179 (200)
178 1ka9_F Imidazole glycerol phos 65.6 18 0.00062 28.6 7.0 54 87-143 48-104 (252)
179 4gud_A Imidazole glycerol phos 65.3 24 0.00083 27.0 7.5 35 31-65 4-38 (211)
180 3inp_A D-ribulose-phosphate 3- 64.8 13 0.00046 29.9 6.0 60 98-159 72-132 (246)
181 3paj_A Nicotinate-nucleotide p 64.7 18 0.00061 30.5 6.9 55 100-158 219-273 (320)
182 4fb5_A Probable oxidoreductase 64.1 15 0.00053 30.8 6.6 46 114-159 94-143 (393)
183 1qpo_A Quinolinate acid phosph 63.8 27 0.00092 28.8 7.8 94 32-141 168-267 (284)
184 1rd5_A Tryptophan synthase alp 63.6 12 0.00042 30.0 5.6 57 99-159 82-141 (262)
185 3tha_A Tryptophan synthase alp 63.6 17 0.00057 29.6 6.3 46 114-159 88-139 (252)
186 3ajx_A 3-hexulose-6-phosphate 63.3 4.9 0.00017 31.0 3.0 59 98-158 39-100 (207)
187 3s83_A Ggdef family protein; s 63.0 14 0.00048 29.4 5.9 98 46-155 145-253 (259)
188 3gjy_A Spermidine synthase; AP 62.5 32 0.0011 28.8 8.2 69 29-108 113-188 (317)
189 1izc_A Macrophomate synthase i 62.1 56 0.0019 27.6 9.6 76 83-158 62-140 (339)
190 3bo9_A Putative nitroalkan dio 62.0 41 0.0014 28.0 8.8 79 49-142 120-204 (326)
191 3dty_A Oxidoreductase, GFO/IDH 61.9 49 0.0017 28.1 9.5 115 27-159 10-134 (398)
192 3e8x_A Putative NAD-dependent 61.8 7 0.00024 30.4 3.8 41 20-60 12-52 (236)
193 3q2i_A Dehydrogenase; rossmann 61.7 35 0.0012 28.4 8.4 109 26-159 10-124 (354)
194 1geq_A Tryptophan synthase alp 61.5 56 0.0019 25.6 9.2 42 99-143 179-220 (248)
195 3s5p_A Ribose 5-phosphate isom 61.4 14 0.00047 28.1 5.1 49 12-60 4-54 (166)
196 3gnn_A Nicotinate-nucleotide p 61.4 46 0.0016 27.6 8.8 65 57-140 214-278 (298)
197 3v5n_A Oxidoreductase; structu 61.3 39 0.0013 29.1 8.8 116 26-159 34-159 (417)
198 2z6i_A Trans-2-enoyl-ACP reduc 61.1 41 0.0014 28.0 8.7 56 84-142 130-190 (332)
199 3khj_A Inosine-5-monophosphate 61.1 50 0.0017 28.1 9.2 91 40-142 132-235 (361)
200 3euw_A MYO-inositol dehydrogen 61.0 68 0.0023 26.4 10.1 107 28-159 3-114 (344)
201 3tsm_A IGPS, indole-3-glycerol 60.7 67 0.0023 26.2 11.6 87 42-142 158-248 (272)
202 2hmt_A YUAA protein; RCK, KTN, 60.4 37 0.0013 23.5 7.3 106 30-141 7-122 (144)
203 1vmd_A MGS, methylglyoxal synt 60.2 15 0.00052 28.2 5.2 97 30-132 28-145 (178)
204 2w6r_A Imidazole glycerol phos 60.2 34 0.0012 27.2 7.8 41 100-143 189-229 (266)
205 3oti_A CALG3; calicheamicin, T 60.1 32 0.0011 28.8 8.0 40 22-61 13-56 (398)
206 3ip3_A Oxidoreductase, putativ 60.0 42 0.0014 27.7 8.6 34 126-159 81-116 (337)
207 3cvo_A Methyltransferase-like 59.8 34 0.0012 26.6 7.4 25 30-54 52-76 (202)
208 3fro_A GLGA glycogen synthase; 59.7 75 0.0026 26.4 11.7 107 29-159 285-394 (439)
209 3m2t_A Probable dehydrogenase; 59.5 39 0.0013 28.3 8.3 109 27-159 3-117 (359)
210 1eep_A Inosine 5'-monophosphat 59.5 84 0.0029 26.9 12.3 90 41-142 181-284 (404)
211 4dzz_A Plasmid partitioning pr 59.2 29 0.001 25.9 6.9 66 29-108 30-97 (206)
212 3tqv_A Nicotinate-nucleotide p 59.1 26 0.00088 29.0 6.8 67 56-141 202-268 (287)
213 2tps_A Protein (thiamin phosph 58.6 47 0.0016 25.6 8.1 56 84-142 136-199 (227)
214 3okp_A GDP-mannose-dependent a 58.5 25 0.00086 29.0 6.9 65 85-159 273-343 (394)
215 3dr5_A Putative O-methyltransf 58.4 24 0.00081 27.5 6.3 66 29-107 81-150 (221)
216 2ixa_A Alpha-N-acetylgalactosa 58.1 92 0.0031 26.9 11.0 118 26-159 17-140 (444)
217 3l0g_A Nicotinate-nucleotide p 58.0 18 0.00061 30.2 5.7 68 55-141 210-277 (300)
218 3kux_A Putative oxidoreductase 57.9 76 0.0026 26.3 9.9 46 114-159 67-116 (352)
219 4fxs_A Inosine-5'-monophosphat 57.7 18 0.00063 32.2 6.1 56 84-142 243-299 (496)
220 2fpo_A Methylase YHHF; structu 57.4 51 0.0017 24.9 8.1 66 31-108 79-146 (202)
221 2w6r_A Imidazole glycerol phos 57.0 23 0.00079 28.2 6.2 42 100-144 63-104 (266)
222 2iw1_A Lipopolysaccharide core 57.0 57 0.002 26.5 8.9 65 85-159 271-336 (374)
223 3r2g_A Inosine 5'-monophosphat 57.0 20 0.0007 30.6 6.0 56 84-142 112-168 (361)
224 2p10_A MLL9387 protein; putati 56.2 62 0.0021 26.7 8.5 81 50-144 160-260 (286)
225 1y0e_A Putative N-acetylmannos 55.5 68 0.0023 24.6 9.3 42 99-143 163-204 (223)
226 1o4u_A Type II quinolic acid p 55.4 38 0.0013 27.9 7.3 57 100-159 180-236 (285)
227 1wa3_A 2-keto-3-deoxy-6-phosph 55.0 66 0.0023 24.3 9.2 62 84-150 35-96 (205)
228 3db2_A Putative NADPH-dependen 55.0 34 0.0011 28.6 7.1 105 28-159 4-115 (354)
229 3gnn_A Nicotinate-nucleotide p 55.0 24 0.00083 29.3 6.0 69 85-157 180-250 (298)
230 1qdl_B Protein (anthranilate s 54.8 5 0.00017 30.9 1.7 31 32-62 4-34 (195)
231 2q5c_A NTRC family transcripti 54.8 69 0.0024 24.5 11.8 119 29-159 4-140 (196)
232 3h2s_A Putative NADH-flavin re 54.5 25 0.00086 26.7 5.9 35 30-64 1-35 (224)
233 3lkz_A Non-structural protein 54.3 22 0.00075 29.8 5.5 65 81-161 157-223 (321)
234 2ift_A Putative methylase HI07 54.1 43 0.0015 25.3 7.1 68 30-108 77-149 (201)
235 3p9n_A Possible methyltransfer 54.0 63 0.0022 23.8 10.3 68 30-108 68-139 (189)
236 2c6q_A GMP reductase 2; TIM ba 54.0 99 0.0034 26.0 11.7 103 30-145 133-255 (351)
237 1x1o_A Nicotinate-nucleotide p 53.9 33 0.0011 28.3 6.6 55 100-157 183-237 (286)
238 3i1j_A Oxidoreductase, short c 53.3 74 0.0025 24.5 8.6 93 23-121 8-101 (247)
239 3jy6_A Transcriptional regulat 53.2 63 0.0022 25.2 8.3 38 99-139 111-152 (276)
240 3l4b_C TRKA K+ channel protien 53.2 44 0.0015 25.6 7.1 54 84-142 65-118 (218)
241 1rzu_A Glycogen synthase 1; gl 53.0 1.1E+02 0.0037 26.2 11.3 64 85-158 366-438 (485)
242 2xw6_A MGS, methylglyoxal synt 52.8 37 0.0013 24.6 6.1 37 32-68 8-46 (134)
243 2iuy_A Avigt4, glycosyltransfe 52.6 26 0.00087 28.6 5.9 34 28-61 2-55 (342)
244 4avf_A Inosine-5'-monophosphat 52.6 1.2E+02 0.0042 26.7 12.9 45 99-143 317-361 (490)
245 3e18_A Oxidoreductase; dehydro 52.6 50 0.0017 27.6 7.9 106 27-159 3-114 (359)
246 3o9z_A Lipopolysaccaride biosy 52.4 38 0.0013 27.9 6.9 47 114-160 72-122 (312)
247 4avf_A Inosine-5'-monophosphat 52.2 32 0.0011 30.6 6.8 56 84-142 241-297 (490)
248 3u81_A Catechol O-methyltransf 52.2 58 0.002 24.8 7.7 60 29-95 83-145 (221)
249 2qfm_A Spermine synthase; sper 52.0 82 0.0028 26.9 9.0 68 30-106 212-296 (364)
250 1jcn_A Inosine monophosphate d 51.9 1.3E+02 0.0043 26.7 11.0 41 99-142 346-386 (514)
251 2qzs_A Glycogen synthase; glyc 51.9 1.1E+02 0.0038 26.0 10.6 64 85-158 367-439 (485)
252 1qop_A Tryptophan synthase alp 51.2 47 0.0016 26.7 7.2 42 100-144 194-235 (268)
253 3vk5_A MOEO5; TIM barrel, tran 50.9 42 0.0015 27.7 6.7 58 85-144 200-257 (286)
254 3td9_A Branched chain amino ac 50.7 74 0.0025 26.0 8.6 76 30-120 150-236 (366)
255 3ceu_A Thiamine phosphate pyro 50.6 32 0.0011 26.6 5.8 56 84-141 107-170 (210)
256 4gnr_A ABC transporter substra 50.5 81 0.0028 25.6 8.8 88 30-132 145-240 (353)
257 4fo4_A Inosine 5'-monophosphat 50.3 35 0.0012 29.2 6.4 57 83-142 119-176 (366)
258 3oa2_A WBPB; oxidoreductase, s 50.0 40 0.0014 27.8 6.7 47 114-160 73-123 (318)
259 3usb_A Inosine-5'-monophosphat 50.0 36 0.0012 30.4 6.8 57 83-142 267-324 (511)
260 3bw2_A 2-nitropropane dioxygen 49.9 1.2E+02 0.0039 25.6 10.9 42 98-142 195-236 (369)
261 3tfw_A Putative O-methyltransf 49.9 90 0.0031 24.4 9.8 68 29-108 88-158 (248)
262 2p9j_A Hypothetical protein AQ 49.9 67 0.0023 22.9 7.9 41 100-144 42-82 (162)
263 2f9f_A First mannosyl transfer 49.9 71 0.0024 23.2 9.7 65 85-160 98-162 (177)
264 3c3y_A Pfomt, O-methyltransfer 49.8 61 0.0021 25.2 7.5 71 29-107 95-168 (237)
265 3kts_A Glycerol uptake operon 49.7 18 0.00063 28.0 4.2 54 82-142 125-178 (192)
266 1qpo_A Quinolinate acid phosph 49.5 48 0.0017 27.2 7.0 56 100-159 182-237 (284)
267 3uuw_A Putative oxidoreductase 49.5 67 0.0023 26.0 8.0 106 27-159 4-115 (308)
268 1thf_D HISF protein; thermophI 49.4 47 0.0016 26.1 6.9 40 100-142 184-223 (253)
269 1qap_A Quinolinic acid phospho 49.3 1.1E+02 0.0038 25.2 9.5 91 32-141 182-278 (296)
270 1sui_A Caffeoyl-COA O-methyltr 49.2 94 0.0032 24.4 9.9 72 29-108 104-178 (247)
271 3snr_A Extracellular ligand-bi 49.2 36 0.0012 27.6 6.4 84 31-129 137-231 (362)
272 1t0b_A THUA-like protein; treh 49.2 42 0.0014 27.0 6.5 33 28-60 6-52 (252)
273 2iuy_A Avigt4, glycosyltransfe 49.0 50 0.0017 26.7 7.2 64 85-158 232-306 (342)
274 2i7c_A Spermidine synthase; tr 49.0 89 0.003 25.2 8.6 67 30-108 103-180 (283)
275 2gn4_A FLAA1 protein, UDP-GLCN 48.9 42 0.0014 27.8 6.7 51 11-61 3-55 (344)
276 1x1o_A Nicotinate-nucleotide p 48.9 1.1E+02 0.0038 25.1 9.2 92 32-142 169-267 (286)
277 3hm2_A Precorrin-6Y C5,15-meth 48.8 59 0.002 23.4 7.0 65 29-108 49-115 (178)
278 1i1q_B Anthranilate synthase c 48.6 37 0.0013 25.6 5.9 33 30-62 1-33 (192)
279 2v82_A 2-dehydro-3-deoxy-6-pho 48.5 34 0.0012 26.2 5.7 80 48-143 96-176 (212)
280 3cea_A MYO-inositol 2-dehydrog 48.5 1.1E+02 0.0038 25.0 10.5 109 27-159 6-120 (346)
281 1uir_A Polyamine aminopropyltr 48.3 88 0.003 25.6 8.6 68 29-108 101-183 (314)
282 1h1y_A D-ribulose-5-phosphate 48.3 39 0.0013 26.4 6.1 57 84-143 138-201 (228)
283 3ovp_A Ribulose-phosphate 3-ep 48.2 37 0.0013 26.8 5.9 56 84-142 134-196 (228)
284 3c1a_A Putative oxidoreductase 48.1 70 0.0024 26.0 7.9 45 115-159 70-118 (315)
285 1tqj_A Ribulose-phosphate 3-ep 48.0 20 0.00067 28.4 4.3 58 98-159 49-110 (230)
286 3o07_A Pyridoxine biosynthesis 47.9 18 0.00061 29.9 4.0 42 99-143 186-229 (291)
287 2gjl_A Hypothetical protein PA 47.8 69 0.0024 26.5 7.9 51 83-143 95-145 (328)
288 1h5y_A HISF; histidine biosynt 47.8 47 0.0016 25.8 6.6 41 99-142 65-105 (253)
289 3iwt_A 178AA long hypothetical 47.6 53 0.0018 24.5 6.6 48 40-94 40-91 (178)
290 3sho_A Transcriptional regulat 47.2 83 0.0028 23.2 8.2 95 31-145 41-140 (187)
291 3f4w_A Putative hexulose 6 pho 47.0 47 0.0016 25.3 6.3 59 98-158 39-100 (211)
292 3e9m_A Oxidoreductase, GFO/IDH 47.0 60 0.0021 26.7 7.4 108 28-159 4-116 (330)
293 3e82_A Putative oxidoreductase 46.8 60 0.0021 27.2 7.4 105 27-159 5-116 (364)
294 1lnq_A MTHK channels, potassiu 46.7 1.1E+02 0.0037 25.1 9.0 105 30-142 116-230 (336)
295 1g5t_A COB(I)alamin adenosyltr 46.6 46 0.0016 25.8 6.1 46 81-129 117-167 (196)
296 4gmf_A Yersiniabactin biosynth 46.6 32 0.0011 29.4 5.6 34 126-159 84-117 (372)
297 2f6u_A GGGPS, (S)-3-O-geranylg 46.5 44 0.0015 26.7 6.1 55 86-144 165-219 (234)
298 1req_B Methylmalonyl-COA mutas 46.5 27 0.00093 32.3 5.4 94 40-150 525-625 (637)
299 2r60_A Glycosyl transferase, g 46.1 1.4E+02 0.0049 25.6 10.1 94 42-158 321-422 (499)
300 3ezy_A Dehydrogenase; structur 46.1 1.2E+02 0.0042 24.8 9.5 46 114-159 64-113 (344)
301 1iy9_A Spermidine synthase; ro 45.9 60 0.002 26.1 7.0 55 29-95 99-159 (275)
302 3r75_A Anthranilate/para-amino 45.9 44 0.0015 30.9 6.8 75 28-121 445-528 (645)
303 3c85_A Putative glutathione-re 45.9 86 0.0029 23.0 10.3 109 27-142 37-158 (183)
304 3ffs_A Inosine-5-monophosphate 45.8 40 0.0014 29.3 6.1 56 83-142 155-211 (400)
305 3moi_A Probable dehydrogenase; 45.3 46 0.0016 28.2 6.5 46 114-159 64-113 (387)
306 1thf_D HISF protein; thermophI 45.3 53 0.0018 25.8 6.5 43 99-144 62-104 (253)
307 4gqa_A NAD binding oxidoreduct 45.3 1E+02 0.0034 26.2 8.7 46 114-159 96-145 (412)
308 1h5y_A HISF; histidine biosynt 45.2 42 0.0014 26.1 5.9 55 85-142 168-226 (253)
309 2fhp_A Methylase, putative; al 45.1 85 0.0029 22.7 8.6 68 30-106 68-138 (187)
310 3lkb_A Probable branched-chain 45.0 73 0.0025 26.4 7.7 70 43-127 161-237 (392)
311 2rhc_B Actinorhodin polyketide 44.9 87 0.003 24.8 7.9 34 27-60 20-53 (277)
312 3sc6_A DTDP-4-dehydrorhamnose 44.7 56 0.0019 25.8 6.7 31 30-60 6-36 (287)
313 1vzw_A Phosphoribosyl isomeras 44.7 1.1E+02 0.0037 23.8 8.3 56 84-142 159-221 (244)
314 3tdn_A FLR symmetric alpha-bet 44.6 55 0.0019 25.8 6.5 42 99-143 67-108 (247)
315 1ujp_A Tryptophan synthase alp 44.6 68 0.0023 26.0 7.1 40 100-144 191-230 (271)
316 4eyg_A Twin-arginine transloca 44.3 1E+02 0.0035 25.0 8.4 67 42-121 156-230 (368)
317 3evn_A Oxidoreductase, GFO/IDH 43.9 46 0.0016 27.4 6.2 46 114-159 67-116 (329)
318 1vhc_A Putative KHG/KDPG aldol 43.9 86 0.0029 24.6 7.5 57 85-146 43-99 (224)
319 3jr2_A Hexulose-6-phosphate sy 43.8 12 0.0004 29.3 2.3 20 134-153 107-128 (218)
320 1qv9_A F420-dependent methylen 43.7 31 0.0011 27.8 4.7 61 82-146 62-122 (283)
321 3rot_A ABC sugar transporter, 43.5 81 0.0028 25.0 7.5 80 29-121 3-93 (297)
322 3mz0_A Inositol 2-dehydrogenas 43.5 1.4E+02 0.0046 24.6 9.8 45 115-159 67-115 (344)
323 1jcn_A Inosine monophosphate d 43.5 63 0.0021 28.7 7.3 57 83-142 266-323 (514)
324 4adt_A Pyridoxine biosynthetic 43.3 81 0.0028 26.0 7.5 40 100-142 196-237 (297)
325 2d00_A V-type ATP synthase sub 43.3 79 0.0027 21.8 9.9 81 28-124 2-82 (109)
326 1ka9_F Imidazole glycerol phos 43.1 39 0.0013 26.6 5.4 51 100-153 185-241 (252)
327 3sr7_A Isopentenyl-diphosphate 42.9 1.6E+02 0.0053 25.1 10.3 42 100-143 266-307 (365)
328 4af0_A Inosine-5'-monophosphat 42.6 45 0.0015 30.2 6.0 56 83-141 292-348 (556)
329 2jjm_A Glycosyl transferase, g 42.6 54 0.0018 27.2 6.5 65 85-159 285-349 (394)
330 2gk3_A Putative cytoplasmic pr 42.5 24 0.00083 28.3 4.1 63 43-123 43-127 (256)
331 3qja_A IGPS, indole-3-glycerol 42.4 91 0.0031 25.3 7.6 56 100-158 102-159 (272)
332 3c48_A Predicted glycosyltrans 42.3 1.5E+02 0.0051 24.7 10.7 65 85-159 326-390 (438)
333 2hsj_A Putative platelet activ 42.0 18 0.00062 27.2 3.1 86 28-123 33-133 (214)
334 3axs_A Probable N(2),N(2)-dime 41.9 54 0.0019 28.2 6.4 51 30-92 78-133 (392)
335 1f0k_A MURG, UDP-N-acetylgluco 41.8 69 0.0024 26.0 7.0 62 85-157 255-322 (364)
336 2yzr_A Pyridoxal biosynthesis 41.6 36 0.0012 28.7 5.0 42 99-143 228-271 (330)
337 1p9l_A Dihydrodipicolinate red 41.3 1.3E+02 0.0046 23.8 10.6 78 30-124 1-79 (245)
338 3ew7_A LMO0794 protein; Q8Y8U8 41.2 40 0.0014 25.3 5.0 32 30-61 1-32 (221)
339 2nvw_A Galactose/lactose metab 41.1 1E+02 0.0036 27.0 8.3 47 114-160 108-164 (479)
340 2px2_A Genome polyprotein [con 41.1 44 0.0015 27.3 5.3 64 82-161 137-202 (269)
341 3tr6_A O-methyltransferase; ce 40.7 1.1E+02 0.0038 23.0 7.7 70 29-107 89-161 (225)
342 2avd_A Catechol-O-methyltransf 40.6 1.2E+02 0.004 23.0 8.3 70 29-107 94-166 (229)
343 3ovp_A Ribulose-phosphate 3-ep 40.4 21 0.00072 28.3 3.3 59 98-159 49-110 (228)
344 3w01_A Heptaprenylglyceryl pho 40.4 23 0.00078 28.4 3.5 59 63-142 26-86 (235)
345 3qk7_A Transcriptional regulat 40.2 76 0.0026 25.1 6.8 15 45-59 32-46 (294)
346 3c3p_A Methyltransferase; NP_9 40.0 1.1E+02 0.0039 22.7 8.3 65 29-108 81-148 (210)
347 2pyy_A Ionotropic glutamate re 39.9 72 0.0025 23.5 6.4 50 26-91 109-158 (228)
348 2l69_A Rossmann 2X3 fold prote 39.8 86 0.003 21.3 11.7 119 30-161 3-124 (134)
349 4gx0_A TRKA domain protein; me 39.8 1.2E+02 0.004 27.0 8.6 107 28-142 126-243 (565)
350 2i1o_A Nicotinate phosphoribos 39.8 1.8E+02 0.0062 25.0 10.6 86 42-140 197-295 (398)
351 3k4h_A Putative transcriptiona 39.7 69 0.0024 25.1 6.5 19 42-60 32-50 (292)
352 1k1e_A Deoxy-D-mannose-octulos 39.6 94 0.0032 22.7 6.9 45 99-147 40-84 (180)
353 3h5l_A Putative branched-chain 39.4 1.7E+02 0.0057 24.4 9.9 70 30-111 165-245 (419)
354 3r2g_A Inosine 5'-monophosphat 39.4 1.8E+02 0.006 24.7 13.2 73 53-142 141-227 (361)
355 3cbg_A O-methyltransferase; cy 39.2 99 0.0034 23.8 7.2 70 29-107 97-169 (232)
356 3ijp_A DHPR, dihydrodipicolina 39.2 51 0.0017 27.2 5.6 48 12-59 4-52 (288)
357 2vpt_A Lipolytic enzyme; ester 39.2 24 0.00083 26.8 3.5 87 28-123 4-129 (215)
358 4fxs_A Inosine-5'-monophosphat 39.2 2E+02 0.0069 25.4 11.5 45 99-143 319-363 (496)
359 3iwp_A Copper homeostasis prot 39.2 57 0.0019 26.9 5.8 93 37-142 136-237 (287)
360 2yw3_A 4-hydroxy-2-oxoglutarat 39.0 1.3E+02 0.0044 23.1 8.0 82 58-157 110-197 (207)
361 2b7n_A Probable nicotinate-nuc 38.7 1E+02 0.0035 24.9 7.4 56 100-158 169-224 (273)
362 1o2d_A Alcohol dehydrogenase, 38.6 86 0.0029 26.5 7.1 65 30-108 41-119 (371)
363 4e21_A 6-phosphogluconate dehy 38.6 1.8E+02 0.006 24.5 10.3 112 26-145 19-141 (358)
364 1h7n_A 5-aminolaevulinic acid 38.3 44 0.0015 28.2 5.0 66 61-139 241-306 (342)
365 1vgv_A UDP-N-acetylglucosamine 38.2 1.6E+02 0.0055 23.9 10.1 40 114-158 301-340 (384)
366 1p0k_A Isopentenyl-diphosphate 38.1 61 0.0021 27.1 6.1 46 96-143 235-280 (349)
367 1es9_A PAF-AH, platelet-activa 38.1 1.3E+02 0.0044 22.8 9.5 86 28-123 37-139 (232)
368 4gi5_A Quinone reductase; prot 38.0 32 0.0011 28.2 4.1 35 26-60 19-60 (280)
369 3bwc_A Spermidine synthase; SA 37.9 1.4E+02 0.0047 24.3 8.1 68 30-108 120-198 (304)
370 1qap_A Quinolinic acid phospho 37.8 72 0.0025 26.3 6.3 54 100-157 196-249 (296)
371 4hkt_A Inositol 2-dehydrogenas 37.8 1.6E+02 0.0056 23.9 10.0 105 29-159 3-112 (331)
372 1h6d_A Precursor form of gluco 37.7 33 0.0011 29.8 4.4 46 114-159 150-199 (433)
373 1tqx_A D-ribulose-5-phosphate 37.7 74 0.0025 25.1 6.2 57 84-143 138-201 (227)
374 4em8_A Ribose 5-phosphate isom 37.6 61 0.0021 24.0 5.2 35 26-60 4-40 (148)
375 3vzx_A Heptaprenylglyceryl pho 37.2 90 0.0031 24.7 6.5 57 84-144 153-209 (228)
376 2r6o_A Putative diguanylate cy 37.2 33 0.0011 28.1 4.1 97 47-155 170-277 (294)
377 1pv8_A Delta-aminolevulinic ac 37.0 43 0.0015 28.1 4.7 66 61-139 230-295 (330)
378 3lp8_A Phosphoribosylamine-gly 37.0 57 0.0019 28.3 5.8 44 11-54 3-46 (442)
379 2bw0_A 10-FTHFDH, 10-formyltet 36.9 52 0.0018 27.6 5.4 31 27-58 20-50 (329)
380 2b2c_A Spermidine synthase; be 36.9 1.3E+02 0.0044 24.7 7.9 55 29-95 132-192 (314)
381 2esr_A Methyltransferase; stru 36.8 1.1E+02 0.0037 22.0 6.8 66 30-107 55-123 (177)
382 3bbl_A Regulatory protein of L 36.8 1.3E+02 0.0046 23.4 7.8 17 43-59 28-44 (287)
383 1v4v_A UDP-N-acetylglucosamine 36.7 1.7E+02 0.0058 23.8 11.0 58 85-158 275-332 (376)
384 2ho3_A Oxidoreductase, GFO/IDH 36.7 1.7E+02 0.0058 23.7 11.6 46 114-159 62-111 (325)
385 2o07_A Spermidine synthase; st 36.7 93 0.0032 25.4 6.9 54 30-95 120-179 (304)
386 1lst_A Lysine, arginine, ornit 36.6 1.1E+02 0.0038 22.7 7.1 53 27-91 109-161 (239)
387 2pt6_A Spermidine synthase; tr 36.6 1.7E+02 0.0057 24.1 8.5 55 29-95 140-200 (321)
388 3qvq_A Phosphodiesterase OLEI0 36.4 1.3E+02 0.0044 23.7 7.6 38 101-143 201-238 (252)
389 2f6u_A GGGPS, (S)-3-O-geranylg 36.3 69 0.0024 25.5 5.8 56 84-149 33-90 (234)
390 3orh_A Guanidinoacetate N-meth 36.0 98 0.0033 24.0 6.7 54 30-94 84-138 (236)
391 2bdq_A Copper homeostasis prot 36.0 70 0.0024 25.4 5.6 94 37-144 101-208 (224)
392 3skv_A SSFX3; jelly roll, GDSL 36.0 1.2E+02 0.0042 25.8 7.7 39 83-123 243-292 (385)
393 1gox_A (S)-2-hydroxy-acid oxid 35.9 2E+02 0.0068 24.3 9.5 88 43-143 215-309 (370)
394 1mxs_A KDPG aldolase; 2-keto-3 35.8 88 0.003 24.6 6.3 93 45-151 19-112 (225)
395 2otd_A Glycerophosphodiester p 35.5 1.3E+02 0.0044 23.5 7.4 38 101-143 198-235 (247)
396 3hcw_A Maltose operon transcri 35.4 73 0.0025 25.2 6.0 24 37-60 23-49 (295)
397 3l6u_A ABC-type sugar transpor 35.4 77 0.0026 24.8 6.1 64 43-122 28-97 (293)
398 1viz_A PCRB protein homolog; s 35.2 99 0.0034 24.6 6.6 55 86-144 157-211 (240)
399 3tb6_A Arabinose metabolism tr 35.2 1.3E+02 0.0046 23.3 7.6 20 41-60 33-52 (298)
400 1tlt_A Putative oxidoreductase 35.2 72 0.0025 26.0 6.0 46 114-159 65-114 (319)
401 2l69_A Rossmann 2X3 fold prote 35.2 1E+02 0.0036 20.9 6.6 29 36-64 84-112 (134)
402 4eso_A Putative oxidoreductase 35.2 91 0.0031 24.4 6.5 43 27-69 6-48 (255)
403 3c6k_A Spermine synthase; sper 35.1 1.1E+02 0.0037 26.3 7.1 55 31-94 230-294 (381)
404 1rd5_A Tryptophan synthase alp 34.9 65 0.0022 25.6 5.5 42 99-143 189-230 (262)
405 3pfn_A NAD kinase; structural 34.8 94 0.0032 26.5 6.7 110 29-159 38-163 (365)
406 1wl8_A GMP synthase [glutamine 34.8 28 0.00097 26.2 3.1 78 31-122 2-80 (189)
407 2oyr_A UPF0341 protein YHIQ; a 34.8 1.4E+02 0.0047 23.9 7.4 56 30-97 111-177 (258)
408 1vrd_A Inosine-5'-monophosphat 34.5 96 0.0033 27.3 7.0 57 83-142 248-305 (494)
409 2c6q_A GMP reductase 2; TIM ba 34.4 77 0.0026 26.8 6.1 56 84-142 132-188 (351)
410 3e3m_A Transcriptional regulat 34.4 1.1E+02 0.0038 25.0 7.1 19 42-60 89-107 (355)
411 3khj_A Inosine-5-monophosphate 34.4 83 0.0028 26.7 6.3 56 83-142 116-172 (361)
412 3hp4_A GDSL-esterase; psychrot 34.2 68 0.0023 23.2 5.2 82 29-121 2-110 (185)
413 3oy2_A Glycosyltransferase B73 34.1 1.5E+02 0.005 24.6 7.9 64 85-159 274-354 (413)
414 3ecs_A Translation initiation 33.9 1.6E+02 0.0053 24.6 7.8 80 27-123 145-232 (315)
415 3huu_A Transcription regulator 33.8 1.7E+02 0.0059 23.0 9.2 62 43-122 47-114 (305)
416 3beo_A UDP-N-acetylglucosamine 33.7 1.9E+02 0.0064 23.4 12.3 59 85-159 283-341 (375)
417 3dci_A Arylesterase; SGNH_hydr 33.7 1.5E+02 0.0053 22.4 7.5 41 84-124 100-157 (232)
418 2px0_A Flagellar biosynthesis 33.6 1.1E+02 0.0038 24.9 6.8 10 83-92 181-190 (296)
419 2j9r_A Thymidine kinase; TK1, 33.5 54 0.0019 25.7 4.6 34 84-121 101-135 (214)
420 1xhl_A Short-chain dehydrogena 33.4 78 0.0027 25.6 5.9 34 27-60 24-57 (297)
421 2xxa_A Signal recognition part 33.4 40 0.0014 29.4 4.3 10 83-92 182-191 (433)
422 1vrd_A Inosine-5'-monophosphat 33.3 2.4E+02 0.0083 24.6 10.2 43 99-141 325-367 (494)
423 4fe7_A Xylose operon regulator 33.2 1E+02 0.0035 26.0 6.8 73 29-121 25-104 (412)
424 2gpy_A O-methyltransferase; st 33.2 1.4E+02 0.0047 22.7 7.1 68 29-108 78-148 (233)
425 3nav_A Tryptophan synthase alp 33.2 1.9E+02 0.0066 23.3 8.1 42 100-144 197-238 (271)
426 1xj5_A Spermidine synthase 1; 33.0 1.3E+02 0.0045 25.0 7.3 56 29-95 144-205 (334)
427 2khz_A C-MYC-responsive protei 33.0 86 0.003 23.2 5.6 114 26-159 8-150 (165)
428 3egc_A Putative ribose operon 32.9 79 0.0027 24.8 5.8 19 42-60 27-45 (291)
429 3lop_A Substrate binding perip 32.7 62 0.0021 26.5 5.2 64 43-121 159-229 (364)
430 3sg0_A Extracellular ligand-bi 32.4 62 0.0021 26.5 5.2 73 42-129 176-255 (386)
431 2i2c_A Probable inorganic poly 32.4 1.6E+02 0.0056 23.5 7.6 57 84-159 35-92 (272)
432 3slg_A PBGP3 protein; structur 32.3 27 0.00092 29.0 2.9 37 24-60 19-56 (372)
433 3ntv_A MW1564 protein; rossman 32.2 1.1E+02 0.0038 23.4 6.4 66 29-108 95-164 (232)
434 3qfm_A SAPH, putative uncharac 32.2 57 0.0019 26.2 4.7 69 25-126 7-77 (270)
435 1kjq_A GART 2, phosphoribosylg 32.2 1.2E+02 0.0042 25.2 7.1 32 28-60 10-41 (391)
436 2vpi_A GMP synthase; guanine m 32.0 20 0.00067 28.1 1.8 31 30-60 25-55 (218)
437 1iow_A DD-ligase, DDLB, D-ALA\ 31.9 34 0.0012 27.5 3.3 53 29-92 2-62 (306)
438 1viz_A PCRB protein homolog; s 31.9 83 0.0028 25.1 5.6 55 84-148 33-89 (240)
439 3pxx_A Carveol dehydrogenase; 31.9 1.2E+02 0.0041 23.9 6.7 35 26-60 7-41 (287)
440 4ef8_A Dihydroorotate dehydrog 31.9 58 0.002 27.7 4.9 41 100-142 265-305 (354)
441 2dri_A D-ribose-binding protei 31.8 1.8E+02 0.006 22.5 8.9 63 43-121 21-89 (271)
442 2y88_A Phosphoribosyl isomeras 31.7 1E+02 0.0034 23.9 6.1 56 84-142 162-224 (244)
443 1zgh_A Methionyl-tRNA formyltr 31.6 36 0.0012 27.7 3.4 55 26-91 27-84 (260)
444 4e6p_A Probable sorbitol dehyd 31.5 1.7E+02 0.0057 22.7 7.5 83 27-121 6-89 (259)
445 1xea_A Oxidoreductase, GFO/IDH 31.5 1.4E+02 0.0047 24.3 7.2 46 114-159 63-112 (323)
446 2kx7_A Sensor-like histidine k 31.5 88 0.003 22.1 4.9 90 28-157 6-96 (117)
447 1s3l_A Hypothetical protein MJ 31.5 1E+02 0.0035 23.1 5.9 36 84-126 52-87 (190)
448 4amg_A Snogd; transferase, pol 31.4 41 0.0014 28.0 3.9 51 11-61 2-58 (400)
449 4dyv_A Short-chain dehydrogena 31.3 75 0.0026 25.3 5.4 40 28-67 27-66 (272)
450 3ioy_A Short-chain dehydrogena 31.3 2.1E+02 0.0072 23.2 8.4 33 28-60 7-39 (319)
451 3k9c_A Transcriptional regulat 31.2 1.3E+02 0.0044 23.6 6.8 31 28-59 13-47 (289)
452 3vnd_A TSA, tryptophan synthas 31.2 1.7E+02 0.0057 23.7 7.4 43 99-144 194-236 (267)
453 1jub_A Dihydroorotate dehydrog 30.9 91 0.0031 25.4 5.9 69 60-142 106-191 (311)
454 1y81_A Conserved hypothetical 30.9 69 0.0024 22.9 4.6 103 28-138 13-118 (138)
455 3o4f_A Spermidine synthase; am 30.8 48 0.0016 27.4 4.1 55 30-96 108-169 (294)
456 2ioy_A Periplasmic sugar-bindi 30.8 1.5E+02 0.0052 23.1 7.1 64 42-121 20-89 (283)
457 1w5q_A Delta-aminolevulinic ac 30.7 56 0.0019 27.5 4.4 65 61-139 238-302 (337)
458 1yxy_A Putative N-acetylmannos 30.7 80 0.0027 24.4 5.3 41 99-143 175-215 (234)
459 2rgy_A Transcriptional regulat 30.7 95 0.0032 24.4 5.9 15 45-59 30-44 (290)
460 3inp_A D-ribulose-phosphate 3- 30.5 36 0.0012 27.4 3.2 58 84-142 156-222 (246)
461 3g8r_A Probable spore coat pol 30.3 2.1E+02 0.0071 24.2 8.0 76 41-133 79-154 (350)
462 1vcf_A Isopentenyl-diphosphate 30.2 2.3E+02 0.0078 23.3 10.5 47 98-146 242-289 (332)
463 2xhz_A KDSD, YRBH, arabinose 5 30.2 1.6E+02 0.0054 21.4 7.1 96 31-145 51-149 (183)
464 3n0w_A ABC branched chain amin 30.2 1.4E+02 0.0047 24.5 7.0 60 42-116 159-225 (379)
465 1m72_A Caspase-1; caspase, cys 30.1 2E+02 0.0068 23.2 7.7 31 39-69 55-87 (272)
466 3e05_A Precorrin-6Y C5,15-meth 30.1 1.7E+02 0.0057 21.6 8.2 64 30-108 65-130 (204)
467 3s4y_A Thiamin pyrophosphokina 30.1 2E+02 0.0068 22.9 7.6 101 29-145 21-131 (247)
468 1nvm_A HOA, 4-hydroxy-2-oxoval 29.9 1.3E+02 0.0046 25.0 6.9 45 96-142 66-112 (345)
469 1rpx_A Protein (ribulose-phosp 29.8 1.9E+02 0.0063 22.2 7.4 58 98-158 55-115 (230)
470 3o74_A Fructose transport syst 29.7 95 0.0033 23.9 5.7 11 99-109 108-118 (272)
471 3nrc_A Enoyl-[acyl-carrier-pro 29.6 1.3E+02 0.0045 23.8 6.6 86 24-122 21-111 (280)
472 3tjr_A Short chain dehydrogena 29.4 2.2E+02 0.0074 22.8 8.0 39 27-65 29-67 (301)
473 3rpe_A MDAB, modulator of drug 29.3 1.2E+02 0.004 23.7 6.0 39 21-59 17-66 (218)
474 2nzl_A Hydroxyacid oxidase 1; 29.3 2.3E+02 0.0079 24.2 8.4 91 43-146 242-340 (392)
475 3i45_A Twin-arginine transloca 29.2 2.3E+02 0.008 23.1 8.9 79 30-121 143-234 (387)
476 1l6s_A Porphobilinogen synthas 29.1 86 0.003 26.2 5.2 65 61-139 224-288 (323)
477 4a29_A Engineered retro-aldol 28.8 2.3E+02 0.0079 22.9 11.9 98 32-143 130-233 (258)
478 4htf_A S-adenosylmethionine-de 28.7 1.3E+02 0.0045 23.6 6.5 68 30-109 91-162 (285)
479 4hjf_A Ggdef family protein; s 28.4 62 0.0021 27.0 4.5 97 47-155 219-326 (340)
480 1ydw_A AX110P-like protein; st 28.4 2.5E+02 0.0085 23.1 10.0 45 115-159 72-120 (362)
481 3h5o_A Transcriptional regulat 28.4 2.1E+02 0.0073 22.9 7.9 21 40-60 79-99 (339)
482 1ep3_A Dihydroorotate dehydrog 28.3 83 0.0028 25.5 5.2 39 100-141 230-268 (311)
483 2v25_A Major cell-binding fact 28.3 1.4E+02 0.0047 22.4 6.3 55 26-92 145-201 (259)
484 3sz8_A 2-dehydro-3-deoxyphosph 28.2 96 0.0033 25.5 5.4 71 84-159 162-271 (285)
485 1wbh_A KHG/KDPG aldolase; lyas 28.2 2.1E+02 0.0071 22.1 7.7 57 85-146 42-98 (214)
486 3ipc_A ABC transporter, substr 28.0 1E+02 0.0034 25.0 5.7 70 43-127 156-232 (356)
487 4g65_A TRK system potassium up 28.0 2E+02 0.0068 25.0 7.9 37 30-67 4-40 (461)
488 1o4u_A Type II quinolic acid p 27.9 57 0.0019 26.9 4.0 69 57-141 198-266 (285)
489 2glx_A 1,5-anhydro-D-fructose 27.8 2.4E+02 0.0082 22.7 8.5 44 115-158 63-110 (332)
490 2e6f_A Dihydroorotate dehydrog 27.7 82 0.0028 25.7 5.1 40 100-141 232-271 (314)
491 2z2v_A Hypothetical protein PH 27.7 2.7E+02 0.0092 23.3 8.8 50 10-69 5-54 (365)
492 2igt_A SAM dependent methyltra 27.7 1.5E+02 0.0052 24.5 6.8 54 30-92 176-233 (332)
493 1qo2_A Molecule: N-((5-phospho 27.7 82 0.0028 24.5 4.9 39 100-142 63-101 (241)
494 2fvy_A D-galactose-binding per 27.5 1.7E+02 0.0059 22.9 7.0 64 42-122 21-92 (309)
495 1inl_A Spermidine synthase; be 27.4 1.2E+02 0.0041 24.5 6.0 55 29-95 114-174 (296)
496 2pz0_A Glycerophosphoryl diest 27.3 81 0.0028 24.9 4.8 39 100-143 201-239 (252)
497 3hut_A Putative branched-chain 27.3 1.5E+02 0.0051 23.9 6.7 83 31-128 141-234 (358)
498 1fxw_F Alpha2, platelet-activa 27.2 2E+02 0.0069 21.6 8.7 85 28-122 38-139 (229)
499 1wa3_A 2-keto-3-deoxy-6-phosph 27.2 57 0.002 24.7 3.8 41 99-142 137-177 (205)
500 1zx0_A Guanidinoacetate N-meth 27.1 1.6E+02 0.0056 22.4 6.6 50 31-91 85-135 (236)
No 1
>3to5_A CHEY homolog; alpha(5)beta(5), chemotaxis, FLIM, phosphorylation, motor AC signaling protein; 1.65A {Vibrio cholerae}
Probab=99.96 E-value=1.6e-28 Score=186.85 Aligned_cols=122 Identities=30% Similarity=0.521 Sum_probs=111.7
Q ss_pred CCCcEEEEEeCCHHHHHHHHHHHhhcCCE-EEEECCHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCCCCCHHHHHHH
Q 026776 27 TEEVHVLAVDDSFVDRKVIERLLTISSCK-VTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKK 105 (233)
Q Consensus 27 ~~~~~ILIVddd~~~~~~l~~~L~~~g~~-v~~a~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp~~~g~~ll~~ 105 (233)
.+.+|||||||++.++..++.+|+..||. +..+.+|.+|++.+ ....||+||+|+.||++||++++++
T Consensus 10 ~k~~rILiVDD~~~~r~~l~~~L~~~G~~~v~~a~~g~~al~~~-----------~~~~~DlillD~~MP~mdG~el~~~ 78 (134)
T 3to5_A 10 NKNMKILIVDDFSTMRRIVKNLLRDLGFNNTQEADDGLTALPML-----------KKGDFDFVVTDWNMPGMQGIDLLKN 78 (134)
T ss_dssp CTTCCEEEECSCHHHHHHHHHHHHHTTCCCEEEESSHHHHHHHH-----------HHHCCSEEEEESCCSSSCHHHHHHH
T ss_pred CCCCEEEEEeCCHHHHHHHHHHHHHcCCcEEEEECCHHHHHHHH-----------HhCCCCEEEEcCCCCCCCHHHHHHH
Confidence 35789999999999999999999999985 77899999999998 3457999999999999999999999
Q ss_pred HhccCCCCCCcEEEEeCCCcHHHHHHHHHcCCceEEeCCCCHHHHHHHHHHHhh
Q 026776 106 IKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVKLSDVKRIKDYLTR 159 (233)
Q Consensus 106 Lr~~~~~~~~piIvlt~~~~~~~~~~al~~Ga~dyL~KP~~~~eL~~~~~~l~~ 159 (233)
||+....+.+|||++|++.+.+...+++++|+++||.||++.++|...++.+.+
T Consensus 79 ir~~~~~~~ipvI~lTa~~~~~~~~~~~~~Ga~~yl~KP~~~~~L~~~i~~~l~ 132 (134)
T 3to5_A 79 IRADEELKHLPVLMITAEAKREQIIEAAQAGVNGYIVKPFTAATLKEKLDKIFE 132 (134)
T ss_dssp HHHSTTTTTCCEEEEESSCCHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHCC
T ss_pred HHhCCCCCCCeEEEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHh
Confidence 998776679999999999999999999999999999999999999887776654
No 2
>3gl9_A Response regulator; beta-sheet, surrounded by alpha helices, BOTH sides, signaling protein; HET: BFD; 1.80A {Thermotoga maritima} SCOP: c.23.1.0 PDB: 3dgf_C 3dge_C
Probab=99.92 E-value=2e-23 Score=154.68 Aligned_cols=118 Identities=30% Similarity=0.407 Sum_probs=108.8
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhcCCEEEEECCHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCCCCCHHHHHHHHhcc
Q 026776 30 VHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKKIKDS 109 (233)
Q Consensus 30 ~~ILIVddd~~~~~~l~~~L~~~g~~v~~a~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp~~~g~~ll~~Lr~~ 109 (233)
.+||||||++..+..++.+|+..||++..+.++.+|++.+ ....||+||+|+.||+++|++++++||+.
T Consensus 3 ~~ILivdd~~~~~~~l~~~l~~~g~~v~~~~~~~~al~~l-----------~~~~~dlvllD~~~p~~~g~~~~~~l~~~ 71 (122)
T 3gl9_A 3 KKVLLVDDSAVLRKIVSFNLKKEGYEVIEAENGQIALEKL-----------SEFTPDLIVLXIMMPVMDGFTVLKKLQEK 71 (122)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHH-----------TTBCCSEEEECSCCSSSCHHHHHHHHHTS
T ss_pred ceEEEEeCCHHHHHHHHHHHHHCCcEEEEeCCHHHHHHHH-----------HhcCCCEEEEeccCCCCcHHHHHHHHHhc
Confidence 4899999999999999999999999999999999999998 56689999999999999999999999987
Q ss_pred CCCCCCcEEEEeCCCcHHHHHHHHHcCCceEEeCCCCHHHHHHHHHHHh
Q 026776 110 SALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVKLSDVKRIKDYLT 158 (233)
Q Consensus 110 ~~~~~~piIvlt~~~~~~~~~~al~~Ga~dyL~KP~~~~eL~~~~~~l~ 158 (233)
...+.+|+|++|+..+.....++++.|+++||.||++.++|...++.+.
T Consensus 72 ~~~~~~pii~~s~~~~~~~~~~~~~~Ga~~~l~KP~~~~~L~~~i~~~l 120 (122)
T 3gl9_A 72 EEWKRIPVIVLTAKGGEEDESLALSLGARKVMRKPFSPSQFIEEVKHLL 120 (122)
T ss_dssp TTTTTSCEEEEESCCSHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHH
T ss_pred ccccCCCEEEEecCCchHHHHHHHhcChhhhccCCCCHHHHHHHHHHHh
Confidence 6556899999999999999999999999999999999999987776554
No 3
>3t6k_A Response regulator receiver; flavodoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: MSE; 1.86A {Chloroflexus aurantiacus} SCOP: c.23.1.0
Probab=99.91 E-value=1.5e-23 Score=158.17 Aligned_cols=122 Identities=23% Similarity=0.388 Sum_probs=110.7
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHhhcCCEEEEECCHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCCCCCHHHHHHHHh
Q 026776 28 EEVHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKKIK 107 (233)
Q Consensus 28 ~~~~ILIVddd~~~~~~l~~~L~~~g~~v~~a~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp~~~g~~ll~~Lr 107 (233)
++.+||||||++..+..+..+|+..||.|..+.++.++++.+ ....||+||+|+.||+++|++++++||
T Consensus 3 ~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~-----------~~~~~dlvl~D~~lp~~~g~~~~~~lr 71 (136)
T 3t6k_A 3 KPHTLLIVDDDDTVAEMLELVLRGAGYEVRRAASGEEALQQI-----------YKNLPDALICDVLLPGIDGYTLCKRVR 71 (136)
T ss_dssp CCCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHH-----------HHSCCSEEEEESCCSSSCHHHHHHHHH
T ss_pred CCCEEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHH-----------HhCCCCEEEEeCCCCCCCHHHHHHHHH
Confidence 468999999999999999999999999999999999999988 345799999999999999999999999
Q ss_pred ccCCCCCCcEEEEeCCCcHHHHHHHHHcCCceEEeCCCCHHHHHHHHHHHhhh
Q 026776 108 DSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVKLSDVKRIKDYLTRD 160 (233)
Q Consensus 108 ~~~~~~~~piIvlt~~~~~~~~~~al~~Ga~dyL~KP~~~~eL~~~~~~l~~~ 160 (233)
+......+|||++|+..+.....++++.|+++||.||++.++|...++.+.+.
T Consensus 72 ~~~~~~~~pii~~t~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~l~~ 124 (136)
T 3t6k_A 72 QHPLTKTLPILMLTAQGDISAKIAGFEAGANDYLAKPFEPQELVYRVKNILAR 124 (136)
T ss_dssp HSGGGTTCCEEEEECTTCHHHHHHHHHHTCSEEEETTCCHHHHHHHHHHHHHC
T ss_pred cCCCcCCccEEEEecCCCHHHHHHHHhcCcceEEeCCCCHHHHHHHHHHHHhc
Confidence 86544589999999999999999999999999999999999998777766543
No 4
>2lpm_A Two-component response regulator; transcription regulator; NMR {Sinorhizobium meliloti}
Probab=99.91 E-value=8.2e-26 Score=169.25 Aligned_cols=114 Identities=17% Similarity=0.220 Sum_probs=100.1
Q ss_pred CCCcEEEEEeCCHHHHHHHHHHHhhcCCEEE-EECCHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCCCCCHHHHHHH
Q 026776 27 TEEVHVLAVDDSFVDRKVIERLLTISSCKVT-AVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKK 105 (233)
Q Consensus 27 ~~~~~ILIVddd~~~~~~l~~~L~~~g~~v~-~a~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp~~~g~~ll~~ 105 (233)
.+++|||||||++.++..++.+|+..||+|. .+.++.+|++.+ ...+||+||+|++||++||++++++
T Consensus 6 ~r~~rILiVdD~~~~~~~l~~~L~~~G~~v~~~a~~g~eAl~~~-----------~~~~~DlvllDi~mP~~~G~el~~~ 74 (123)
T 2lpm_A 6 ERRLRVLVVEDESMIAMLIEDTLCELGHEVAATASRMQEALDIA-----------RKGQFDIAIIDVNLDGEPSYPVADI 74 (123)
T ss_dssp CCCCCEEEESSSTTTSHHHHHHHHHHCCCCCBCSCCHHHHHHHH-----------HHCCSSEEEECSSSSSCCSHHHHHH
T ss_pred CCCCEEEEEeCCHHHHHHHHHHHHHCCCEEEEEECCHHHHHHHH-----------HhCCCCEEEEecCCCCCCHHHHHHH
Confidence 3578999999999999999999999999975 789999999998 4567999999999999999999999
Q ss_pred HhccCCCCCCcEEEEeCCCcHHHHHHHHHcCCceEEeCCCCHHHHHHHHHHHh
Q 026776 106 IKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVKLSDVKRIKDYLT 158 (233)
Q Consensus 106 Lr~~~~~~~~piIvlt~~~~~~~~~~al~~Ga~dyL~KP~~~~eL~~~~~~l~ 158 (233)
||+. ++|||++|++.+... +.++|+++||.|||+.++|...+.++.
T Consensus 75 lr~~----~ipvI~lTa~~~~~~---~~~~g~~~yl~KP~~~~~L~~~l~~~~ 120 (123)
T 2lpm_A 75 LAER----NVPFIFATGYGSKGL---DTRYSNIPLLTKPFLDSELEAVLVQIS 120 (123)
T ss_dssp HHHT----CCSSCCBCTTCTTSC---CSSSCSCSCBCSSSSHHHHHHHHSTTC
T ss_pred HHcC----CCCEEEEecCccHHH---HHhCCCCcEEECCCCHHHHHHHHHHHH
Confidence 9973 689999999876543 346899999999999999987765543
No 5
>3h1g_A Chemotaxis protein CHEY homolog; sulfate-bound CHEY, cytoplasm, flagellar rotatio magnesium, metal-binding, phosphoprotein; 1.70A {Helicobacter pylori} SCOP: c.23.1.1 PDB: 3gwg_A 3h1e_A 3h1f_A
Probab=99.90 E-value=2.6e-22 Score=149.72 Aligned_cols=122 Identities=29% Similarity=0.493 Sum_probs=107.7
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHhhcCCE-EEEECCHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCCCCCHHHHHHHH
Q 026776 28 EEVHVLAVDDSFVDRKVIERLLTISSCK-VTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKKI 106 (233)
Q Consensus 28 ~~~~ILIVddd~~~~~~l~~~L~~~g~~-v~~a~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp~~~g~~ll~~L 106 (233)
..++||||||++..+..++.+|+..||. +..+.++.++++.+. ....||+||+|+.||+++|++++++|
T Consensus 4 ~~~~iLivdd~~~~~~~l~~~L~~~g~~~v~~~~~~~~a~~~~~----------~~~~~dlvi~D~~~p~~~g~~~~~~l 73 (129)
T 3h1g_A 4 GSMKLLVVDDSSTMRRIIKNTLSRLGYEDVLEAEHGVEAWEKLD----------ANADTKVLITDWNMPEMNGLDLVKKV 73 (129)
T ss_dssp --CCEEEECSCHHHHHHHHHHHHHTTCCCEEEESSHHHHHHHHH----------HCTTCCEEEECSCCSSSCHHHHHHHH
T ss_pred CCcEEEEEeCCHHHHHHHHHHHHHcCCcEEEEeCCHHHHHHHHH----------hCCCCCEEEEeCCCCCCCHHHHHHHH
Confidence 4688999999999999999999999984 889999999998873 23469999999999999999999999
Q ss_pred hccCCCCCCcEEEEeCCCcHHHHHHHHHcCCceEEeCCCCHHHHHHHHHHHhh
Q 026776 107 KDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVKLSDVKRIKDYLTR 159 (233)
Q Consensus 107 r~~~~~~~~piIvlt~~~~~~~~~~al~~Ga~dyL~KP~~~~eL~~~~~~l~~ 159 (233)
|+....+.+|||++|++.+.....++++.|+++||.||++.++|...++.+.+
T Consensus 74 r~~~~~~~~pii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~L~~~l~~~l~ 126 (129)
T 3h1g_A 74 RSDSRFKEIPIIMITAEGGKAEVITALKAGVNNYIVKPFTPQVLKEKLEVVLG 126 (129)
T ss_dssp HTSTTCTTCCEEEEESCCSHHHHHHHHHHTCCEEEESCCCHHHHHHHHHHHHC
T ss_pred HhcCCCCCCeEEEEeCCCChHHHHHHHHcCccEEEeCCCCHHHHHHHHHHHhc
Confidence 98654568999999999999999999999999999999999999887776543
No 6
>2r25_B Osmosensing histidine protein kinase SLN1; alpha5-BETA5, response regulator, four helix bundle, histidine phosphotransfer (HPT) protein; 1.70A {Saccharomyces cerevisiae} SCOP: c.23.1.1 PDB: 1oxk_B 1oxb_B
Probab=99.89 E-value=3e-22 Score=150.48 Aligned_cols=124 Identities=26% Similarity=0.427 Sum_probs=106.3
Q ss_pred CcEEEEEeCCHHHHHHHHHHHhhcCC-EEEEECCHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCCCCCHHHHHHHHh
Q 026776 29 EVHVLAVDDSFVDRKVIERLLTISSC-KVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKKIK 107 (233)
Q Consensus 29 ~~~ILIVddd~~~~~~l~~~L~~~g~-~v~~a~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp~~~g~~ll~~Lr 107 (233)
.++||||||++..+..++.+|+..|+ .+..+.++.++++.+..... ....||+||+|+.||+++|+++++.||
T Consensus 2 ~~~ILivdD~~~~~~~l~~~L~~~g~~~v~~~~~~~~al~~~~~~~~------~~~~~dlvllD~~mp~~~G~~~~~~lr 75 (133)
T 2r25_B 2 SVKILVVEDNHVNQEVIKRMLNLEGIENIELACDGQEAFDKVKELTS------KGENYNMIFMDVQMPKVDGLLSTKMIR 75 (133)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHHTTCCCEEEESSHHHHHHHHHHHHH------HTCCCSEEEECSCCSSSCHHHHHHHHH
T ss_pred CceEEEEcCCHHHHHHHHHHHHHcCCceEEEECCHHHHHHHHHHHHh------cCCCCCEEEEeCCCCCCChHHHHHHHH
Confidence 47899999999999999999998887 58889999999998842100 014699999999999999999999999
Q ss_pred ccCCCCCCcEEEEeCCCcHHHHHHHHHcCCceEEeCCCCHHHHHHHHHHHhh
Q 026776 108 DSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVKLSDVKRIKDYLTR 159 (233)
Q Consensus 108 ~~~~~~~~piIvlt~~~~~~~~~~al~~Ga~dyL~KP~~~~eL~~~~~~l~~ 159 (233)
+... ..+|||++|++.+.....++++.|+++||.||++.++|...++.+..
T Consensus 76 ~~~~-~~~~ii~lt~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~l~~~~~ 126 (133)
T 2r25_B 76 RDLG-YTSPIVALTAFADDSNIKECLESGMNGFLSKPIKRPKLKTILTEFCA 126 (133)
T ss_dssp HHSC-CCSCEEEEESCCSHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHCT
T ss_pred hhcC-CCCCEEEEECCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHH
Confidence 7422 26899999999999999999999999999999999999888777654
No 7
>3f6p_A Transcriptional regulatory protein YYCF; unphosphorelated, receiver domain, cytoplasm, DNA-binding, phosphoprotein, transcription regulation; 1.95A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 2zwm_A
Probab=99.89 E-value=2.9e-22 Score=147.80 Aligned_cols=115 Identities=22% Similarity=0.385 Sum_probs=105.3
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhcCCEEEEECCHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCCCCCHHHHHHHHhcc
Q 026776 30 VHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKKIKDS 109 (233)
Q Consensus 30 ~~ILIVddd~~~~~~l~~~L~~~g~~v~~a~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp~~~g~~ll~~Lr~~ 109 (233)
.+||||||++..+..++.+|+..||++..+.++.++++.+ ....||+||+|+.||+++|++++++||+.
T Consensus 3 ~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~-----------~~~~~dlii~D~~~p~~~g~~~~~~lr~~ 71 (120)
T 3f6p_A 3 KKILVVDDEKPIADILEFNLRKEGYEVHCAHDGNEAVEMV-----------EELQPDLILLDIMLPNKDGVEVCREVRKK 71 (120)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHH-----------HTTCCSEEEEETTSTTTHHHHHHHHHHTT
T ss_pred CeEEEEECCHHHHHHHHHHHHhCCEEEEEeCCHHHHHHHH-----------hhCCCCEEEEeCCCCCCCHHHHHHHHHhc
Confidence 5899999999999999999999999999999999999998 45679999999999999999999999974
Q ss_pred CCCCCCcEEEEeCCCcHHHHHHHHHcCCceEEeCCCCHHHHHHHHHHHh
Q 026776 110 SALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVKLSDVKRIKDYLT 158 (233)
Q Consensus 110 ~~~~~~piIvlt~~~~~~~~~~al~~Ga~dyL~KP~~~~eL~~~~~~l~ 158 (233)
. .+|+|++|+..+.....++++.|+++||.||++.++|...++.+.
T Consensus 72 ~---~~~ii~~t~~~~~~~~~~~~~~ga~~~l~KP~~~~~l~~~i~~~l 117 (120)
T 3f6p_A 72 Y---DMPIIMLTAKDSEIDKVIGLEIGADDYVTKPFSTRELLARVKANL 117 (120)
T ss_dssp C---CSCEEEEEESSCHHHHHHHHHTTCCEEEEESCCHHHHHHHHHHHH
T ss_pred C---CCCEEEEECCCChHHHHHHHhCCcceeEcCCCCHHHHHHHHHHHH
Confidence 2 789999999999888899999999999999999999977766554
No 8
>3gt7_A Sensor protein; structural genomics, signal receiver domain, kinase, PSI-2, protein structure initiative; 2.30A {Syntrophus aciditrophicus SB}
Probab=99.89 E-value=7e-22 Score=152.06 Aligned_cols=124 Identities=33% Similarity=0.479 Sum_probs=112.3
Q ss_pred CCCcEEEEEeCCHHHHHHHHHHHhhcCCEEEEECCHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCCCCCHHHHHHHH
Q 026776 27 TEEVHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKKI 106 (233)
Q Consensus 27 ~~~~~ILIVddd~~~~~~l~~~L~~~g~~v~~a~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp~~~g~~ll~~L 106 (233)
.++++||||||++..+..++.+|+..||.|..+.++.++++.+ ....||+||+|+.||+++|+++++.|
T Consensus 5 ~~~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l-----------~~~~~dlii~D~~l~~~~g~~~~~~l 73 (154)
T 3gt7_A 5 NRAGEILIVEDSPTQAEHLKHILEETGYQTEHVRNGREAVRFL-----------SLTRPDLIISDVLMPEMDGYALCRWL 73 (154)
T ss_dssp --CCEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHH-----------TTCCCSEEEEESCCSSSCHHHHHHHH
T ss_pred cCCCcEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHH-----------HhCCCCEEEEeCCCCCCCHHHHHHHH
Confidence 3568999999999999999999999999999999999999998 56689999999999999999999999
Q ss_pred hccCCCCCCcEEEEeCCCcHHHHHHHHHcCCceEEeCCCCHHHHHHHHHHHhhhh
Q 026776 107 KDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVKLSDVKRIKDYLTRDV 161 (233)
Q Consensus 107 r~~~~~~~~piIvlt~~~~~~~~~~al~~Ga~dyL~KP~~~~eL~~~~~~l~~~~ 161 (233)
|+....+.+|||++++..+.....++++.|+++||.||++.++|...++.+.+..
T Consensus 74 r~~~~~~~~pii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~l~~~ 128 (154)
T 3gt7_A 74 KGQPDLRTIPVILLTILSDPRDVVRSLECGADDFITKPCKDVVLASHVKRLLSGV 128 (154)
T ss_dssp HHSTTTTTSCEEEEECCCSHHHHHHHHHHCCSEEEESSCCHHHHHHHHHHHHHHT
T ss_pred HhCCCcCCCCEEEEECCCChHHHHHHHHCCCCEEEeCCCCHHHHHHHHHHHHHHH
Confidence 9876456899999999999999999999999999999999999988877766543
No 9
>3rqi_A Response regulator protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid; HET: PHD CIT; 1.70A {Burkholderia pseudomallei}
Probab=99.89 E-value=7.5e-23 Score=162.42 Aligned_cols=119 Identities=17% Similarity=0.290 Sum_probs=107.9
Q ss_pred CCCCcEEEEEeCCHHHHHHHHHHHhhcCCEEEEECCHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCCCCCHHHHHHH
Q 026776 26 DTEEVHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKK 105 (233)
Q Consensus 26 ~~~~~~ILIVddd~~~~~~l~~~L~~~g~~v~~a~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp~~~g~~ll~~ 105 (233)
.+.+++||||||++..+..+..+|...||.|..+.++.+|++.+ ....||+||+|+.||+++|++++++
T Consensus 4 ~m~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~-----------~~~~~dlvl~D~~lp~~~g~~~~~~ 72 (184)
T 3rqi_A 4 SMSDKNFLVIDDNEVFAGTLARGLERRGYAVRQAHNKDEALKLA-----------GAEKFEFITVXLHLGNDSGLSLIAP 72 (184)
T ss_dssp ---CCEEEEECSCHHHHHHHHHHHHHTTCEEEEECSHHHHHHHH-----------TTSCCSEEEECSEETTEESHHHHHH
T ss_pred CCCCCeEEEEcCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHH-----------hhCCCCEEEEeccCCCccHHHHHHH
Confidence 34578999999999999999999999999999999999999998 5678999999999999999999999
Q ss_pred HhccCCCCCCcEEEEeCCCcHHHHHHHHHcCCceEEeCCCCHHHHHHHHHHH
Q 026776 106 IKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVKLSDVKRIKDYL 157 (233)
Q Consensus 106 Lr~~~~~~~~piIvlt~~~~~~~~~~al~~Ga~dyL~KP~~~~eL~~~~~~l 157 (233)
|++..+ .+|||++|++.+.+...++++.|+++||.||++.++|...+..+
T Consensus 73 l~~~~~--~~~ii~lt~~~~~~~~~~a~~~Ga~~~l~KP~~~~~L~~~i~~~ 122 (184)
T 3rqi_A 73 LCDLQP--DARILVLTGYASIATAVQAVKDGADNYLAKPANVESILAALQTN 122 (184)
T ss_dssp HHHHCT--TCEEEEEESSCCHHHHHHHHHHTCSEEEESSCCHHHHHHHTSTT
T ss_pred HHhcCC--CCCEEEEeCCCCHHHHHHHHHhCHHHheeCCCCHHHHHHHHHHH
Confidence 998765 89999999999999999999999999999999999997665543
No 10
>3m6m_D Sensory/regulatory protein RPFC; RPFF, REC, enoyl-COA hydratase, lyase-transferase COMP; 2.50A {Xanthomonas campestris PV}
Probab=99.89 E-value=4.5e-22 Score=151.45 Aligned_cols=122 Identities=30% Similarity=0.496 Sum_probs=105.0
Q ss_pred CCCcEEEEEeCCHHHHHHHHHHHhhcCCEEEEECCHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCCCCCHHHHHHHH
Q 026776 27 TEEVHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKKI 106 (233)
Q Consensus 27 ~~~~~ILIVddd~~~~~~l~~~L~~~g~~v~~a~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp~~~g~~ll~~L 106 (233)
.+.++||||||++..+..++.+|+..||.+..+.+++++++.+ ....||+||+|+.||+++|++++++|
T Consensus 12 ~~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~-----------~~~~~dlvl~D~~mp~~~g~~~~~~l 80 (143)
T 3m6m_D 12 VRSMRMLVADDHEANRMVLQRLLEKAGHKVLCVNGAEQVLDAM-----------AEEDYDAVIVDLHMPGMNGLDMLKQL 80 (143)
T ss_dssp ---CEEEEECSSHHHHHHHHHHHHC--CEEEEESSHHHHHHHH-----------HHSCCSEEEEESCCSSSCHHHHHHHH
T ss_pred cccceEEEEeCCHHHHHHHHHHHHHcCCeEEEeCCHHHHHHHH-----------hcCCCCEEEEeCCCCCCCHHHHHHHH
Confidence 4568999999999999999999999999999999999999988 34579999999999999999999999
Q ss_pred hcc--CCCCCCcEEEEeCCCcHHHHHHHHHcCCceEEeCCCCHHHHHHHHHHHhh
Q 026776 107 KDS--SALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVKLSDVKRIKDYLTR 159 (233)
Q Consensus 107 r~~--~~~~~~piIvlt~~~~~~~~~~al~~Ga~dyL~KP~~~~eL~~~~~~l~~ 159 (233)
|+. ...+.+|+|++|+..+.+...++++.|+++||.||++.++|...+..+..
T Consensus 81 r~~~~~~~~~~pii~~s~~~~~~~~~~~~~~Ga~~~l~KP~~~~~L~~~l~~~~~ 135 (143)
T 3m6m_D 81 RVMQASGMRYTPVVVLSADVTPEAIRACEQAGARAFLAKPVVAAKLLDTLADLAV 135 (143)
T ss_dssp HHHHHTTCCCCCEEEEESCCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHC-
T ss_pred HhchhccCCCCeEEEEeCCCCHHHHHHHHHcChhheeeCCCCHHHHHHHHHHHHH
Confidence 853 22346899999999999999999999999999999999999888776643
No 11
>1dbw_A Transcriptional regulatory protein FIXJ; doubly wound five-stranded beta/alpha fold, nitrogen fixatio regulation; HET: 15P; 1.60A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1dck_A* 1dcm_A 1d5w_A*
Probab=99.89 E-value=1.7e-21 Score=144.46 Aligned_cols=119 Identities=26% Similarity=0.401 Sum_probs=108.3
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHhhcCCEEEEECCHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCCCCCHHHHHHHHh
Q 026776 28 EEVHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKKIK 107 (233)
Q Consensus 28 ~~~~ILIVddd~~~~~~l~~~L~~~g~~v~~a~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp~~~g~~ll~~Lr 107 (233)
...+||||||++..+..++.+|...||.+..+.++.++++.+ ....||+||+|+.||+++|++++++|+
T Consensus 2 ~~~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~-----------~~~~~dlvi~D~~l~~~~g~~~~~~l~ 70 (126)
T 1dbw_A 2 QDYTVHIVDDEEPVRKSLAFMLTMNGFAVKMHQSAEAFLAFA-----------PDVRNGVLVTDLRMPDMSGVELLRNLG 70 (126)
T ss_dssp CCCEEEEEESSHHHHHHHHHHHHHTTCEEEEESCHHHHHHHG-----------GGCCSEEEEEECCSTTSCHHHHHHHHH
T ss_pred CCCEEEEEcCCHHHHHHHHHHHHhCCcEEEEeCCHHHHHHHH-----------hcCCCCEEEEECCCCCCCHHHHHHHHH
Confidence 357899999999999999999999999999999999999988 445799999999999999999999999
Q ss_pred ccCCCCCCcEEEEeCCCcHHHHHHHHHcCCceEEeCCCCHHHHHHHHHHHhh
Q 026776 108 DSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVKLSDVKRIKDYLTR 159 (233)
Q Consensus 108 ~~~~~~~~piIvlt~~~~~~~~~~al~~Ga~dyL~KP~~~~eL~~~~~~l~~ 159 (233)
+..+ .+|+|++|+..+.....++++.|+++||.||++.++|...++.+.+
T Consensus 71 ~~~~--~~~ii~~s~~~~~~~~~~~~~~ga~~~l~Kp~~~~~l~~~i~~~~~ 120 (126)
T 1dbw_A 71 DLKI--NIPSIVITGHGDVPMAVEAMKAGAVDFIEKPFEDTVIIEAIERASE 120 (126)
T ss_dssp HTTC--CCCEEEEECTTCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHT
T ss_pred hcCC--CCCEEEEECCCCHHHHHHHHHhCHHHheeCCCCHHHHHHHHHHHHH
Confidence 8654 8999999999998899999999999999999999999887776554
No 12
>1i3c_A Response regulator RCP1; phytochrome, signaling protein; 1.90A {Synechocystis SP} SCOP: c.23.1.1 PDB: 1jlk_A
Probab=99.88 E-value=1.9e-21 Score=148.67 Aligned_cols=130 Identities=23% Similarity=0.362 Sum_probs=110.1
Q ss_pred CCCcEEEEEeCCHHHHHHHHHHHhhcCC--EEEEECCHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCCCCCHHHHHH
Q 026776 27 TEEVHVLAVDDSFVDRKVIERLLTISSC--KVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLK 104 (233)
Q Consensus 27 ~~~~~ILIVddd~~~~~~l~~~L~~~g~--~v~~a~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp~~~g~~ll~ 104 (233)
.+.++||||||++..+..++.+|+..|+ .+..+.++.++++.+....+. .....||+||+|+.||+++|+++++
T Consensus 6 ~~~~~ILivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~al~~l~~~~~~----~~~~~~dlillD~~lp~~~g~~l~~ 81 (149)
T 1i3c_A 6 NPPKVILLVEDSKADSRLVQEVLKTSTIDHELIILRDGLAAMAFLQQQGEY----ENSPRPNLILLDLNLPKKDGREVLA 81 (149)
T ss_dssp CCCEEEEEECCCHHHHHHHHHHHHSCCSCEEEEEECSHHHHHHHHTTCGGG----TTCCCCSEEEECSCCSSSCHHHHHH
T ss_pred CCCCeEEEEECCHHHHHHHHHHHHhcCCCccEEEeCCHHHHHHHHHhcccc----ccCCCCCEEEEeCCCCCCcHHHHHH
Confidence 3568999999999999999999998876 888999999999988321000 0024699999999999999999999
Q ss_pred HHhccCCCCCCcEEEEeCCCcHHHHHHHHHcCCceEEeCCCCHHHHHHHHHHHhhh
Q 026776 105 KIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVKLSDVKRIKDYLTRD 160 (233)
Q Consensus 105 ~Lr~~~~~~~~piIvlt~~~~~~~~~~al~~Ga~dyL~KP~~~~eL~~~~~~l~~~ 160 (233)
.|++......+|||++|+..+.....++++.|+++||.||++.++|...++.+.+.
T Consensus 82 ~l~~~~~~~~~piiils~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~~~~ 137 (149)
T 1i3c_A 82 EIKQNPDLKRIPVVVLTTSHNEDDVIASYELHVNCYLTKSRNLKDLFKMVQGIESF 137 (149)
T ss_dssp HHHHCTTTTTSCEEEEESCCCHHHHHHHHHTTCSEEEECCSSHHHHHHHHHHHHHH
T ss_pred HHHhCcCcCCCeEEEEECCCChHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHHH
Confidence 99986534589999999999888899999999999999999999998877776553
No 13
>3kto_A Response regulator receiver protein; PSI-II,structural genomics, protein structure initiative; 1.98A {Pseudoalteromonas atlantica T6C} SCOP: c.23.1.0
Probab=99.88 E-value=4.8e-22 Score=149.60 Aligned_cols=121 Identities=17% Similarity=0.210 Sum_probs=110.3
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHhhcCCEEEEECCHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCCC--CCHHHHHHH
Q 026776 28 EEVHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPG--MTGYELLKK 105 (233)
Q Consensus 28 ~~~~ILIVddd~~~~~~l~~~L~~~g~~v~~a~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp~--~~g~~ll~~ 105 (233)
...+||||||++..+..++.+|+..||++..+.++.++++.+ ....||+||+|+.||+ ++|++++++
T Consensus 5 ~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l-----------~~~~~dlvi~D~~l~~~~~~g~~~~~~ 73 (136)
T 3kto_A 5 HHPIIYLVDHQKDARAALSKLLSPLDVTIQCFASAESFMRQQ-----------ISDDAIGMIIEAHLEDKKDSGIELLET 73 (136)
T ss_dssp --CEEEEECSCHHHHHHHHHHHTTSSSEEEEESSHHHHTTSC-----------CCTTEEEEEEETTGGGBTTHHHHHHHH
T ss_pred CCCeEEEEcCCHHHHHHHHHHHHHCCcEEEEeCCHHHHHHHH-----------hccCCCEEEEeCcCCCCCccHHHHHHH
Confidence 468999999999999999999999999999999999999887 5667999999999999 999999999
Q ss_pred HhccCCCCCCcEEEEeCCCcHHHHHHHHHcCCceEEeCCCCHHHHHHHHHHHhhhh
Q 026776 106 IKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVKLSDVKRIKDYLTRDV 161 (233)
Q Consensus 106 Lr~~~~~~~~piIvlt~~~~~~~~~~al~~Ga~dyL~KP~~~~eL~~~~~~l~~~~ 161 (233)
||+..+ .+|||++|+..+.....++++.|+++||.||++.++|...++.+....
T Consensus 74 l~~~~~--~~~ii~~s~~~~~~~~~~~~~~ga~~~l~KP~~~~~l~~~i~~~~~~~ 127 (136)
T 3kto_A 74 LVKRGF--HLPTIVMASSSDIPTAVRAMRASAADFIEKPFIEHVLVHDVQQIINGA 127 (136)
T ss_dssp HHHTTC--CCCEEEEESSCCHHHHHHHHHTTCSEEEESSBCHHHHHHHHHHHHHHH
T ss_pred HHhCCC--CCCEEEEEcCCCHHHHHHHHHcChHHheeCCCCHHHHHHHHHHHHhcc
Confidence 998764 899999999999999999999999999999999999988877776543
No 14
>1jbe_A Chemotaxis protein CHEY; signaling protein; 1.08A {Escherichia coli} SCOP: c.23.1.1 PDB: 3chy_A 1a0o_A 1cey_A 1bdj_A 1eay_A 1f4v_A 1ffg_A 1ffs_A 1ffw_A 1fqw_A 2b1j_A 1chn_A 1djm_A 1kmi_Y* 1d4z_A 3olx_A 3olw_A 1cye_A 2che_A 2chf_A ...
Probab=99.88 E-value=3.8e-21 Score=142.60 Aligned_cols=121 Identities=28% Similarity=0.468 Sum_probs=108.1
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHhhcCC-EEEEECCHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCCCCCHHHHHHHH
Q 026776 28 EEVHVLAVDDSFVDRKVIERLLTISSC-KVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKKI 106 (233)
Q Consensus 28 ~~~~ILIVddd~~~~~~l~~~L~~~g~-~v~~a~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp~~~g~~ll~~L 106 (233)
+.++||||||++..+..++.+|+..|| .+..+.++.++++.+ ....||+||+|+.||+++|+++++.|
T Consensus 3 ~~~~ilivdd~~~~~~~l~~~l~~~~~~~v~~~~~~~~a~~~~-----------~~~~~dlvi~D~~l~~~~g~~l~~~l 71 (128)
T 1jbe_A 3 KELKFLVVDDFSTMRRIVRNLLKELGFNNVEEAEDGVDALNKL-----------QAGGYGFVISDWNMPNMDGLELLKTI 71 (128)
T ss_dssp TTCCEEEECSCHHHHHHHHHHHHHTTCCCEEEESSHHHHHHHH-----------TTCCCCEEEEESCCSSSCHHHHHHHH
T ss_pred CccEEEEECCCHHHHHHHHHHHHHcCCcEEEeeCCHHHHHHHH-----------HhcCCCEEEEeCCCCCCCHHHHHHHH
Confidence 457899999999999999999999998 789999999999988 45679999999999999999999999
Q ss_pred hccCCCCCCcEEEEeCCCcHHHHHHHHHcCCceEEeCCCCHHHHHHHHHHHhh
Q 026776 107 KDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVKLSDVKRIKDYLTR 159 (233)
Q Consensus 107 r~~~~~~~~piIvlt~~~~~~~~~~al~~Ga~dyL~KP~~~~eL~~~~~~l~~ 159 (233)
|+....+.+|+|++++..+.....++++.|+++|+.||++.++|...++.+.+
T Consensus 72 ~~~~~~~~~~ii~~s~~~~~~~~~~~~~~ga~~~l~KP~~~~~l~~~i~~~~~ 124 (128)
T 1jbe_A 72 RAXXAMSALPVLMVTAEAKKENIIAAAQAGASGYVVKPFTAATLEEKLNKIFE 124 (128)
T ss_dssp HC--CCTTCCEEEEESSCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHH
T ss_pred HhhcccCCCcEEEEecCccHHHHHHHHHhCcCceeecCCCHHHHHHHHHHHHH
Confidence 98544458999999999998999999999999999999999999877776654
No 15
>3crn_A Response regulator receiver domain protein, CHEY-; structural genomics, signal regulator receiver domain; HET: PHD; 1.58A {Methanospirillum hungatei jf-1}
Probab=99.88 E-value=1.8e-21 Score=145.77 Aligned_cols=118 Identities=20% Similarity=0.266 Sum_probs=107.5
Q ss_pred CcEEEEEeCCHHHHHHHHHHHhhcCCEEEEECCHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCCCCCHHHHHHHHhc
Q 026776 29 EVHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKKIKD 108 (233)
Q Consensus 29 ~~~ILIVddd~~~~~~l~~~L~~~g~~v~~a~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp~~~g~~ll~~Lr~ 108 (233)
.++||||||++..+..++.+|+..||.+..+.++.++++.+ ....||+||+|+.||+++|+++++.|++
T Consensus 3 ~~~Ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~-----------~~~~~dlvl~D~~l~~~~g~~~~~~l~~ 71 (132)
T 3crn_A 3 LKRILIVDDDTAILDSTKQILEFEGYEVEIAATAGEGLAKI-----------ENEFFNLALFXIKLPDMEGTELLEKAHK 71 (132)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHH-----------HHSCCSEEEECSBCSSSBHHHHHHHHHH
T ss_pred ccEEEEEeCCHHHHHHHHHHHHHCCceEEEeCCHHHHHHHH-----------hcCCCCEEEEecCCCCCchHHHHHHHHh
Confidence 47899999999999999999999999999999999999988 3456999999999999999999999998
Q ss_pred cCCCCCCcEEEEeCCCcHHHHHHHHHcCCceEEeCCCCHHHHHHHHHHHhh
Q 026776 109 SSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVKLSDVKRIKDYLTR 159 (233)
Q Consensus 109 ~~~~~~~piIvlt~~~~~~~~~~al~~Ga~dyL~KP~~~~eL~~~~~~l~~ 159 (233)
..+ .+|+|++++..+.....++++.|+++||.||++.++|...++.+.+
T Consensus 72 ~~~--~~~ii~~s~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~~~ 120 (132)
T 3crn_A 72 LRP--GMKKIMVTGYASLENSVFSLNAGADAYIMKPVNPRDLLEKIKEKLD 120 (132)
T ss_dssp HCT--TSEEEEEESCCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHH
T ss_pred hCC--CCcEEEEeccccHHHHHHHHhccchhhccCCCCHHHHHHHHHHHHh
Confidence 655 8999999999998889999999999999999999999877766544
No 16
>3heb_A Response regulator receiver domain protein (CHEY); NYSGXRC, PSI-II, respose regulator, structure initiative, structural genomics; 2.40A {Rhodospirillum rubrum} SCOP: c.23.1.0
Probab=99.88 E-value=3.2e-21 Score=147.63 Aligned_cols=133 Identities=26% Similarity=0.444 Sum_probs=112.5
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHhhcCC--EEEEECCHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCCCCCHHHHHHH
Q 026776 28 EEVHVLAVDDSFVDRKVIERLLTISSC--KVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKK 105 (233)
Q Consensus 28 ~~~~ILIVddd~~~~~~l~~~L~~~g~--~v~~a~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp~~~g~~ll~~ 105 (233)
.+++||||||++..+..++.+|+..|+ .+..+.++.++++.+..... ........||+||+|+.||+++|+++++.
T Consensus 3 ~~~~ILivddd~~~~~~l~~~L~~~g~~~~v~~~~~~~~al~~l~~~~~--~~~~~~~~~dliilD~~l~~~~g~~~~~~ 80 (152)
T 3heb_A 3 LSVTIVMIEDDLGHARLIEKNIRRAGVNNEIIAFTDGTSALNYLFGDDK--SGRVSAGRAQLVLLDLNLPDMTGIDILKL 80 (152)
T ss_dssp --CEEEEECCCHHHHHHHHHHHHHTTCCCCEEEESSHHHHHHHHHCTTS--SSGGGTTCBEEEEECSBCSSSBHHHHHHH
T ss_pred CCceEEEEeCCHHHHHHHHHHHHhCCCcceEEEeCCHHHHHHHHhcccc--ccccccCCCCEEEEeCCCCCCcHHHHHHH
Confidence 368999999999999999999999998 89999999999998841100 00001457999999999999999999999
Q ss_pred HhccCCCCCCcEEEEeCCCcHHHHHHHHHcCCceEEeCCCCHHHHHHHHHHHhhhhh
Q 026776 106 IKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVKLSDVKRIKDYLTRDVN 162 (233)
Q Consensus 106 Lr~~~~~~~~piIvlt~~~~~~~~~~al~~Ga~dyL~KP~~~~eL~~~~~~l~~~~~ 162 (233)
||+....+.+|||++|+..+.....++++.|+++||.||++.++|...++.+.+...
T Consensus 81 lr~~~~~~~~pii~~t~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~~~ 137 (152)
T 3heb_A 81 VKENPHTRRSPVVILTTTDDQREIQRCYDLGANVYITKPVNYENFANAIRQLGLFFS 137 (152)
T ss_dssp HHHSTTTTTSCEEEEESCCCHHHHHHHHHTTCSEEEECCSSHHHHHHHHHHHHHHHT
T ss_pred HHhcccccCCCEEEEecCCCHHHHHHHHHCCCcEEEeCCCCHHHHHHHHHHHHHHHH
Confidence 998544558999999999999999999999999999999999999988888866543
No 17
>1p6q_A CHEY2; chemotaxis, signal transduction, response regulator, structural proteomics in europe, spine, structural genomics; NMR {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1p6u_A
Probab=99.88 E-value=1.3e-21 Score=145.36 Aligned_cols=121 Identities=23% Similarity=0.433 Sum_probs=108.7
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHhhcCC-EEEEECCHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCCCCCHHHHHHHH
Q 026776 28 EEVHVLAVDDSFVDRKVIERLLTISSC-KVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKKI 106 (233)
Q Consensus 28 ~~~~ILIVddd~~~~~~l~~~L~~~g~-~v~~a~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp~~~g~~ll~~L 106 (233)
+.++||||||++..+..+..+|+..|| .+..+.++.++++.+ ....||+||+|+.||+++|+++++.|
T Consensus 5 ~~~~ilivdd~~~~~~~l~~~L~~~g~~~v~~~~~~~~a~~~~-----------~~~~~dlvl~D~~l~~~~g~~~~~~l 73 (129)
T 1p6q_A 5 EKIKVLIVDDQVTSRLLLGDALQQLGFKQITAAGDGEQGMKIM-----------AQNPHHLVISDFNMPKMDGLGLLQAV 73 (129)
T ss_dssp SCCCEEEECSSHHHHHHHHHHHHTTTCSCEECCSSHHHHHHHH-----------HTSCCSEEEECSSSCSSCHHHHHHHH
T ss_pred ccCeEEEEcCCHHHHHHHHHHHHHCCCcEEEecCCHHHHHHHH-----------HcCCCCEEEEeCCCCCCCHHHHHHHH
Confidence 457899999999999999999999998 888899999999988 45579999999999999999999999
Q ss_pred hccCCCCCCcEEEEeCCCcHHHHHHHHHcCCceEEeCCCCHHHHHHHHHHHhh
Q 026776 107 KDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVKLSDVKRIKDYLTR 159 (233)
Q Consensus 107 r~~~~~~~~piIvlt~~~~~~~~~~al~~Ga~dyL~KP~~~~eL~~~~~~l~~ 159 (233)
|+....+.+|+|++|+..+.....++++.|+++|+.||++.++|...++.+.+
T Consensus 74 ~~~~~~~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~ 126 (129)
T 1p6q_A 74 RANPATKKAAFIILTAQGDRALVQKAAALGANNVLAKPFTIEKMKAAIEAVFG 126 (129)
T ss_dssp TTCTTSTTCEEEECCSCCCHHHHHHHHHHTCSCEECCCSSHHHHHHHHHHHHH
T ss_pred hcCccccCCCEEEEeCCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHH
Confidence 98654458999999999988888999999999999999999999887776544
No 18
>2pl1_A Transcriptional regulatory protein PHOP; CHEY-like fold, response regulator, beryllium fluoride, transcription factor, activated, virulence; 1.90A {Escherichia coli} SCOP: c.23.1.1 PDB: 2pkx_A
Probab=99.88 E-value=3.3e-21 Score=141.36 Aligned_cols=117 Identities=21% Similarity=0.412 Sum_probs=106.6
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhcCCEEEEECCHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCCCCCHHHHHHHHhcc
Q 026776 30 VHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKKIKDS 109 (233)
Q Consensus 30 ~~ILIVddd~~~~~~l~~~L~~~g~~v~~a~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp~~~g~~ll~~Lr~~ 109 (233)
++||||||++..+..+...|...||.+..+.++.++++.+ ....||++|+|+.||+++|+++++.+++.
T Consensus 1 ~~ilivdd~~~~~~~l~~~l~~~g~~v~~~~~~~~a~~~~-----------~~~~~dlil~D~~l~~~~g~~~~~~l~~~ 69 (121)
T 2pl1_A 1 MRVLVVEDNALLRHHLKVQIQDAGHQVDDAEDAKEADYYL-----------NEHIPDIAIVDLGLPDEDGLSLIRRWRSN 69 (121)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHH-----------HHSCCSEEEECSCCSSSCHHHHHHHHHHT
T ss_pred CeEEEEeCcHHHHHHHHHHHhhcCCEEEEeCCHHHHHHHH-----------hccCCCEEEEecCCCCCCHHHHHHHHHhc
Confidence 4799999999999999999999999999999999999988 34569999999999999999999999986
Q ss_pred CCCCCCcEEEEeCCCcHHHHHHHHHcCCceEEeCCCCHHHHHHHHHHHhh
Q 026776 110 SALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVKLSDVKRIKDYLTR 159 (233)
Q Consensus 110 ~~~~~~piIvlt~~~~~~~~~~al~~Ga~dyL~KP~~~~eL~~~~~~l~~ 159 (233)
.+ .+|+|++++..+.....++++.|+++|+.||++.++|...++.+.+
T Consensus 70 ~~--~~~ii~~s~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~~ 117 (121)
T 2pl1_A 70 DV--SLPILVLTARESWQDKVEVLSAGADDYVTKPFHIEEVMARMQALMR 117 (121)
T ss_dssp TC--CSCEEEEESCCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHH
T ss_pred CC--CCCEEEEecCCCHHHHHHHHHcCccceEECCCCHHHHHHHHHHHHH
Confidence 54 8999999999998888999999999999999999999877766544
No 19
>3hv2_A Response regulator/HD domain protein; PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.50A {Pseudomonas fluorescens pf-5}
Probab=99.88 E-value=1.8e-21 Score=149.31 Aligned_cols=122 Identities=21% Similarity=0.307 Sum_probs=111.2
Q ss_pred CCCcEEEEEeCCHHHHHHHHHHHhhcCCEEEEECCHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCCCCCHHHHHHHH
Q 026776 27 TEEVHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKKI 106 (233)
Q Consensus 27 ~~~~~ILIVddd~~~~~~l~~~L~~~g~~v~~a~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp~~~g~~ll~~L 106 (233)
.+..+||||||++..+..+..+|+..||.|..+.++.++++.+ ....||+||+|+.||+++|+++++.|
T Consensus 12 ~~~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l-----------~~~~~dlvi~D~~l~~~~g~~~~~~l 80 (153)
T 3hv2_A 12 TRRPEILLVDSQEVILQRLQQLLSPLPYTLHFARDATQALQLL-----------ASREVDLVISAAHLPQMDGPTLLARI 80 (153)
T ss_dssp CSCCEEEEECSCHHHHHHHHHHHTTSSCEEEEESSHHHHHHHH-----------HHSCCSEEEEESCCSSSCHHHHHHHH
T ss_pred cCCceEEEECCCHHHHHHHHHHhcccCcEEEEECCHHHHHHHH-----------HcCCCCEEEEeCCCCcCcHHHHHHHH
Confidence 4568999999999999999999999999999999999999998 34579999999999999999999999
Q ss_pred hccCCCCCCcEEEEeCCCcHHHHHHHHHcC-CceEEeCCCCHHHHHHHHHHHhhhh
Q 026776 107 KDSSALREIPVVIMSSENILARIDRCLEDG-AEDFIVKPVKLSDVKRIKDYLTRDV 161 (233)
Q Consensus 107 r~~~~~~~~piIvlt~~~~~~~~~~al~~G-a~dyL~KP~~~~eL~~~~~~l~~~~ 161 (233)
++..+ .+|||++++..+.....++++.| +++||.||++.++|...++.+.+..
T Consensus 81 ~~~~~--~~~ii~~s~~~~~~~~~~~~~~g~~~~~l~KP~~~~~l~~~i~~~l~~~ 134 (153)
T 3hv2_A 81 HQQYP--STTRILLTGDPDLKLIAKAINEGEIYRYLSKPWDDQELLLALRQALEHQ 134 (153)
T ss_dssp HHHCT--TSEEEEECCCCCHHHHHHHHHTTCCSEEECSSCCHHHHHHHHHHHHHHH
T ss_pred HhHCC--CCeEEEEECCCCHHHHHHHHhCCCcceEEeCCCCHHHHHHHHHHHHHHh
Confidence 98655 89999999999999999999999 9999999999999988777665543
No 20
>3kht_A Response regulator; PSI-II, 11023K, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.10A {Hahella chejuensis} SCOP: c.23.1.0
Probab=99.88 E-value=4.1e-21 Score=145.57 Aligned_cols=123 Identities=26% Similarity=0.380 Sum_probs=110.8
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHhhcCCE--EEEECCHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCCCCCHHHHHHH
Q 026776 28 EEVHVLAVDDSFVDRKVIERLLTISSCK--VTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKK 105 (233)
Q Consensus 28 ~~~~ILIVddd~~~~~~l~~~L~~~g~~--v~~a~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp~~~g~~ll~~ 105 (233)
++++||||||++..+..+..+|+..|+. +..+.++.++++.+ ....||+||+|+.||+++|+++++.
T Consensus 4 ~~~~ILivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~a~~~l-----------~~~~~dlii~D~~l~~~~g~~~~~~ 72 (144)
T 3kht_A 4 RSKRVLVVEDNPDDIALIRRVLDRKDIHCQLEFVDNGAKALYQV-----------QQAKYDLIILDIGLPIANGFEVMSA 72 (144)
T ss_dssp -CEEEEEECCCHHHHHHHHHHHHHTTCCEEEEEESSHHHHHHHH-----------TTCCCSEEEECTTCGGGCHHHHHHH
T ss_pred CCCEEEEEeCCHHHHHHHHHHHHhcCCCeeEEEECCHHHHHHHh-----------hcCCCCEEEEeCCCCCCCHHHHHHH
Confidence 5689999999999999999999999987 88999999999998 5668999999999999999999999
Q ss_pred HhccCCCCCCcEEEEeCCCcHHHHHHHHHcCCceEEeCCC-CHHHHHHHHHHHhhhh
Q 026776 106 IKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPV-KLSDVKRIKDYLTRDV 161 (233)
Q Consensus 106 Lr~~~~~~~~piIvlt~~~~~~~~~~al~~Ga~dyL~KP~-~~~eL~~~~~~l~~~~ 161 (233)
||+....+.+|||++++..+.....++++.|+++||.||+ +.++|...++.+.++.
T Consensus 73 lr~~~~~~~~pii~~s~~~~~~~~~~~~~~ga~~~l~Kp~~~~~~l~~~i~~~l~~~ 129 (144)
T 3kht_A 73 VRKPGANQHTPIVILTDNVSDDRAKQCMAAGASSVVDKSSNNVTDFYGRIYAIFSYW 129 (144)
T ss_dssp HHSSSTTTTCCEEEEETTCCHHHHHHHHHTTCSEEEECCTTSHHHHHHHHHHHHHHH
T ss_pred HHhcccccCCCEEEEeCCCCHHHHHHHHHcCCCEEEECCCCcHHHHHHHHHHHHHHH
Confidence 9985445589999999999999999999999999999999 9999988777666543
No 21
>3grc_A Sensor protein, kinase; protein structure initiative II(PSI II), NYSGXRC, 11025B, structural genomics; 2.21A {Polaromonas SP}
Probab=99.88 E-value=6.7e-22 Score=149.10 Aligned_cols=124 Identities=14% Similarity=0.227 Sum_probs=109.4
Q ss_pred CCCcEEEEEeCCHHHHHHHHHHHhhcCCEEEEECCHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCCCCCHHHHHHHH
Q 026776 27 TEEVHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKKI 106 (233)
Q Consensus 27 ~~~~~ILIVddd~~~~~~l~~~L~~~g~~v~~a~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp~~~g~~ll~~L 106 (233)
.++.+||||||++..+..+..+|+..||.+..+.++.++++.+ ....||+||+|+.||+++|+++++.|
T Consensus 4 ~~~~~iLivdd~~~~~~~l~~~l~~~g~~v~~~~~~~~a~~~l-----------~~~~~dlvi~d~~l~~~~g~~~~~~l 72 (140)
T 3grc_A 4 APRPRILICEDDPDIARLLNLMLEKGGFDSDMVHSAAQALEQV-----------ARRPYAAMTVDLNLPDQDGVSLIRAL 72 (140)
T ss_dssp -CCSEEEEECSCHHHHHHHHHHHHHTTCEEEEECSHHHHHHHH-----------HHSCCSEEEECSCCSSSCHHHHHHHH
T ss_pred CCCCCEEEEcCCHHHHHHHHHHHHHCCCeEEEECCHHHHHHHH-----------HhCCCCEEEEeCCCCCCCHHHHHHHH
Confidence 4568999999999999999999999999999999999999998 34579999999999999999999999
Q ss_pred hccCCCCCCcEEEEeCCCcHHHHH-HHHHcCCceEEeCCCCHHHHHHHHHHHhhhh
Q 026776 107 KDSSALREIPVVIMSSENILARID-RCLEDGAEDFIVKPVKLSDVKRIKDYLTRDV 161 (233)
Q Consensus 107 r~~~~~~~~piIvlt~~~~~~~~~-~al~~Ga~dyL~KP~~~~eL~~~~~~l~~~~ 161 (233)
|+......+|||++++..+..... .+++.|+++||.||++.++|...+..+.+..
T Consensus 73 ~~~~~~~~~~ii~~s~~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~l~~~ 128 (140)
T 3grc_A 73 RRDSRTRDLAIVVVSANAREGELEFNSQPLAVSTWLEKPIDENLLILSLHRAIDNM 128 (140)
T ss_dssp HTSGGGTTCEEEEECTTHHHHHHHHCCTTTCCCEEECSSCCHHHHHHHHHHHHHHH
T ss_pred HhCcccCCCCEEEEecCCChHHHHHHhhhcCCCEEEeCCCCHHHHHHHHHHHHHhc
Confidence 984434589999999988777766 8899999999999999999988777666543
No 22
>3luf_A Two-component system response regulator/ggdef domain protein; structural genomics, ASA_2441, PSI-2, protein structure initiative; HET: MSE; 1.76A {Aeromonas salmonicida} PDB: 3mf4_A*
Probab=99.87 E-value=1.1e-21 Score=164.44 Aligned_cols=126 Identities=22% Similarity=0.362 Sum_probs=111.3
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHhhcCCEEEEECCHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCCCCCHHHHHHHHh
Q 026776 28 EEVHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKKIK 107 (233)
Q Consensus 28 ~~~~ILIVddd~~~~~~l~~~L~~~g~~v~~a~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp~~~g~~ll~~Lr 107 (233)
++++||||||++..+..+...|+..|+.+..+.++.+|++.+. ....||+||+|+.||+++|++++++||
T Consensus 123 ~~~~ILivDD~~~~~~~l~~~L~~~~~~v~~a~~~~eal~~l~----------~~~~~dlvllD~~mP~~dG~~l~~~lr 192 (259)
T 3luf_A 123 QQIEVLVVDDSRTSRHRTMAQLRKQLLQVHEASHAREALATLE----------QHPAIRLVLVDYYMPEIDGISLVRMLR 192 (259)
T ss_dssp TTCEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHH----------HCTTEEEEEECSCCSSSCHHHHHHHHH
T ss_pred CCCcEEEEeCCHHHHHHHHHHHHHcCcEEEEeCCHHHHHHHHh----------cCCCCCEEEEcCCCCCCCHHHHHHHHH
Confidence 4689999999999999999999999999999999999999883 122489999999999999999999999
Q ss_pred ccCCCCCCcEEEEeCCCcHHHHHHHHHcCCceEEeCCCCHHHHHHHHHHHhhhhhc
Q 026776 108 DSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVKLSDVKRIKDYLTRDVNL 163 (233)
Q Consensus 108 ~~~~~~~~piIvlt~~~~~~~~~~al~~Ga~dyL~KP~~~~eL~~~~~~l~~~~~~ 163 (233)
+..+...+|||++|++.+.....+++++||++||.||++.++|...+..+.+....
T Consensus 193 ~~~~~~~~~ii~~s~~~~~~~~~~a~~~Ga~~yl~KP~~~~~L~~~i~~~l~~~~~ 248 (259)
T 3luf_A 193 ERYSKQQLAIIGISVSDKRGLSARYLKQGANDFLNQPFEPEELQCRVSHNLEALEQ 248 (259)
T ss_dssp HHCCTTTSEEEEEECSSSSSHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHHHHHC
T ss_pred hccCCCCCeEEEEEccCCHHHHHHHHhcChhheEcCCCCHHHHHHHHHHHHHhHhh
Confidence 87665678999999999888889999999999999999999998777666554433
No 23
>3eod_A Protein HNR; response regulator, phosphoprotein, two-component regulatory system, signaling protein; 1.75A {Escherichia coli K12}
Probab=99.87 E-value=2.9e-21 Score=143.73 Aligned_cols=120 Identities=28% Similarity=0.482 Sum_probs=103.7
Q ss_pred CCCcEEEEEeCCHHHHHHHHHHHhhcCCEEEEECCHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCCCCCHHHHHHHH
Q 026776 27 TEEVHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKKI 106 (233)
Q Consensus 27 ~~~~~ILIVddd~~~~~~l~~~L~~~g~~v~~a~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp~~~g~~ll~~L 106 (233)
..+.+||||||++..+..+..+|+..||.+..+.++.++++.+ ....||+||+|+.||+++|+++++.|
T Consensus 5 ~~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l-----------~~~~~dlvi~d~~l~~~~g~~~~~~l 73 (130)
T 3eod_A 5 LVGKQILIVEDEQVFRSLLDSWFSSLGATTVLAADGVDALELL-----------GGFTPDLMICDIAMPRMNGLKLLEHI 73 (130)
T ss_dssp TTTCEEEEECSCHHHHHHHHHHHHHTTCEEEEESCHHHHHHHH-----------TTCCCSEEEECCC-----CHHHHHHH
T ss_pred CCCCeEEEEeCCHHHHHHHHHHHHhCCceEEEeCCHHHHHHHH-----------hcCCCCEEEEecCCCCCCHHHHHHHH
Confidence 4568999999999999999999999999999999999999998 56679999999999999999999999
Q ss_pred hccCCCCCCcEEEEeCCCcHHHHHHHHHcCCceEEeCCC-CHHHHHHHHHHHhh
Q 026776 107 KDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPV-KLSDVKRIKDYLTR 159 (233)
Q Consensus 107 r~~~~~~~~piIvlt~~~~~~~~~~al~~Ga~dyL~KP~-~~~eL~~~~~~l~~ 159 (233)
|+..+ .+|+|++|+..+.....++++.|+++||.||+ +.++|.+.++.+.+
T Consensus 74 ~~~~~--~~~ii~~t~~~~~~~~~~~~~~g~~~~l~KP~~~~~~l~~~i~~~l~ 125 (130)
T 3eod_A 74 RNRGD--QTPVLVISATENMADIAKALRLGVEDVLLKPVKDLNRLREMVFACLY 125 (130)
T ss_dssp HHTTC--CCCEEEEECCCCHHHHHHHHHHCCSEEEESCC---CHHHHHHHHHHC
T ss_pred HhcCC--CCCEEEEEcCCCHHHHHHHHHcCCCEEEeCCCCcHHHHHHHHHHHhc
Confidence 98765 89999999999999999999999999999999 88999887776654
No 24
>3jte_A Response regulator receiver protein; structural genomics, nysgrc, response regulator receiver DOM target 11226E, PSI-2; 1.90A {Clostridium thermocellum atcc 27405}
Probab=99.87 E-value=3.7e-21 Score=145.49 Aligned_cols=123 Identities=24% Similarity=0.381 Sum_probs=110.4
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHhhcCCEEEEECCHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCCCCCHHHHHHHHh
Q 026776 28 EEVHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKKIK 107 (233)
Q Consensus 28 ~~~~ILIVddd~~~~~~l~~~L~~~g~~v~~a~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp~~~g~~ll~~Lr 107 (233)
..++||||||++..+..++.+|...||.+..+.++.++++.+.. ....||+||+|+.||+++|+++++.|+
T Consensus 2 ~~~~ilivdd~~~~~~~l~~~l~~~g~~v~~~~~~~~a~~~~~~---------~~~~~dlvi~d~~l~~~~g~~~~~~l~ 72 (143)
T 3jte_A 2 SLAKILVIDDESTILQNIKFLLEIDGNEVLTASSSTEGLRIFTE---------NCNSIDVVITDMKMPKLSGMDILREIK 72 (143)
T ss_dssp -CCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHHH---------TTTTCCEEEEESCCSSSCHHHHHHHHH
T ss_pred CCCEEEEEcCCHHHHHHHHHHHHhCCceEEEeCCHHHHHHHHHh---------CCCCCCEEEEeCCCCCCcHHHHHHHHH
Confidence 45899999999999999999999999999999999999998831 145799999999999999999999999
Q ss_pred ccCCCCCCcEEEEeCCCcHHHHHHHHHcCCceEEeCCCCHHHHHHHHHHHhhhh
Q 026776 108 DSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVKLSDVKRIKDYLTRDV 161 (233)
Q Consensus 108 ~~~~~~~~piIvlt~~~~~~~~~~al~~Ga~dyL~KP~~~~eL~~~~~~l~~~~ 161 (233)
+..+ .+|||++++..+.....++++.|+++||.||++.++|...+..+.+..
T Consensus 73 ~~~~--~~~ii~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~l~~~~~~~ 124 (143)
T 3jte_A 73 KITP--HMAVIILTGHGDLDNAILAMKEGAFEYLRKPVTAQDLSIAINNAINRK 124 (143)
T ss_dssp HHCT--TCEEEEEECTTCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHHHH
T ss_pred HhCC--CCeEEEEECCCCHHHHHHHHHhCcceeEeCCCCHHHHHHHHHHHHHHH
Confidence 8755 899999999999999999999999999999999999988777665543
No 25
>3lua_A Response regulator receiver protein; two-component signal transduction system, histidine kinase, phosphorelay, receiver domain, nysgxrc; 2.40A {Clostridium thermocellum}
Probab=99.87 E-value=1.3e-21 Score=147.63 Aligned_cols=122 Identities=19% Similarity=0.266 Sum_probs=110.7
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHhh-cCCEEEEECCHHHHHHHhhhhhhhhccCCCC-CcccEEEEcCCCC-CCCHHHHHH
Q 026776 28 EEVHVLAVDDSFVDRKVIERLLTI-SSCKVTAVDSGRRALQFLGLDEEQSINGFDG-LKVDLIITDYCMP-GMTGYELLK 104 (233)
Q Consensus 28 ~~~~ILIVddd~~~~~~l~~~L~~-~g~~v~~a~~~~~al~~l~~~~~~~~~~~~~-~~~DlvllD~~mp-~~~g~~ll~ 104 (233)
.+++||||||++..+..++.+|+. .||++..+.++.++++.+ .. ..||+||+|+.|| +++|+++++
T Consensus 3 ~~~~ilivdd~~~~~~~l~~~L~~~~~~~v~~~~~~~~a~~~l-----------~~~~~~dlvi~D~~l~~~~~g~~~~~ 71 (140)
T 3lua_A 3 LDGTVLLIDYFEYEREKTKIIFDNIGEYDFIEVENLKKFYSIF-----------KDLDSITLIIMDIAFPVEKEGLEVLS 71 (140)
T ss_dssp CCCEEEEECSCHHHHHHHHHHHHHHCCCEEEEECSHHHHHTTT-----------TTCCCCSEEEECSCSSSHHHHHHHHH
T ss_pred CCCeEEEEeCCHHHHHHHHHHHHhccCccEEEECCHHHHHHHH-----------hcCCCCcEEEEeCCCCCCCcHHHHHH
Confidence 468999999999999999999999 899999999999999988 55 7899999999999 999999999
Q ss_pred HHhccCCCCCCcEEEEeCCCcHHHHHHHHHcCCceEEeCCCCHHHHHHHHHHHhhh
Q 026776 105 KIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVKLSDVKRIKDYLTRD 160 (233)
Q Consensus 105 ~Lr~~~~~~~~piIvlt~~~~~~~~~~al~~Ga~dyL~KP~~~~eL~~~~~~l~~~ 160 (233)
.||+......+|||++|+..+.+...++++.|+++||.||++.++|...++.+.+.
T Consensus 72 ~l~~~~~~~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~ 127 (140)
T 3lua_A 72 AIRNNSRTANTPVIIATKSDNPGYRHAALKFKVSDYILKPYPTKRLENSVRSVLKI 127 (140)
T ss_dssp HHHHSGGGTTCCEEEEESCCCHHHHHHHHHSCCSEEEESSCCTTHHHHHHHHHHCC
T ss_pred HHHhCcccCCCCEEEEeCCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHHh
Confidence 99983333489999999999999999999999999999999999998887776553
No 26
>1srr_A SPO0F, sporulation response regulatory protein; aspartate pocket, two component system; 1.90A {Bacillus subtilis} SCOP: c.23.1.1 PDB: 1pey_A 3q15_C 2ftk_E* 1fsp_A 1nat_A 1pux_A 2fsp_A 2jvj_A 2jvk_A 2jvi_A 1f51_E
Probab=99.87 E-value=3.2e-21 Score=142.37 Aligned_cols=117 Identities=26% Similarity=0.392 Sum_probs=106.5
Q ss_pred CcEEEEEeCCHHHHHHHHHHHhhcCCEEEEECCHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCCCCCHHHHHHHHhc
Q 026776 29 EVHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKKIKD 108 (233)
Q Consensus 29 ~~~ILIVddd~~~~~~l~~~L~~~g~~v~~a~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp~~~g~~ll~~Lr~ 108 (233)
..+||||||++..+..++.+|+..||.+..+.++.++++.+. ...||+||+|+.||+++|+++++.|++
T Consensus 3 ~~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~~~-----------~~~~dlvl~D~~l~~~~g~~~~~~l~~ 71 (124)
T 1srr_A 3 NEKILIVDDQSGIRILLNEVFNKEGYQTFQAANGLQALDIVT-----------KERPDLVLLDMKIPGMDGIEILKRMKV 71 (124)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHH-----------HHCCSEEEEESCCTTCCHHHHHHHHHH
T ss_pred CceEEEEeCCHHHHHHHHHHHHHCCcEEEEeCCHHHHHHHHh-----------ccCCCEEEEecCCCCCCHHHHHHHHHH
Confidence 368999999999999999999999999999999999999883 346999999999999999999999998
Q ss_pred cCCCCCCcEEEEeCCCcHHHHHHHHHcCCceEEeCCCCHHHHHHHHHHHh
Q 026776 109 SSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVKLSDVKRIKDYLT 158 (233)
Q Consensus 109 ~~~~~~~piIvlt~~~~~~~~~~al~~Ga~dyL~KP~~~~eL~~~~~~l~ 158 (233)
..+ .+|+|++|+..+.....++++.|+++||.||++.++|...++.+.
T Consensus 72 ~~~--~~~ii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~ 119 (124)
T 1srr_A 72 IDE--NIRVIIMTAYGELDMIQESKELGALTHFAKPFDIDEIRDAVKKYL 119 (124)
T ss_dssp HCT--TCEEEEEESSCCHHHHHHHHHHTCCCEEESSCCHHHHHHHHHHHS
T ss_pred hCC--CCCEEEEEccCchHHHHHHHhcChHhhccCCCCHHHHHHHHHHHh
Confidence 754 899999999998888999999999999999999999987776654
No 27
>3r0j_A Possible two component system response transcript positive regulator PHOP; beta-alpha fold, winged helix-turn-helix; 2.50A {Mycobacterium tuberculosis}
Probab=99.87 E-value=3.1e-21 Score=160.20 Aligned_cols=122 Identities=25% Similarity=0.424 Sum_probs=111.4
Q ss_pred CCCCcEEEEEeCCHHHHHHHHHHHhhcCCEEEEECCHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCCCCCHHHHHHH
Q 026776 26 DTEEVHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKK 105 (233)
Q Consensus 26 ~~~~~~ILIVddd~~~~~~l~~~L~~~g~~v~~a~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp~~~g~~ll~~ 105 (233)
....++||||||++..+..+..+|+..||+|..+.++.++++.+ ....||+||+|+.||+++|++++++
T Consensus 20 ~~~~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~-----------~~~~~dlvllD~~lp~~~g~~~~~~ 88 (250)
T 3r0j_A 20 TTPEARVLVVDDEANIVELLSVSLKFQGFEVYTATNGAQALDRA-----------RETRPDAVILDVXMPGMDGFGVLRR 88 (250)
T ss_dssp CCSSCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHH-----------HHHCCSEEEEESCCSSSCHHHHHHH
T ss_pred CCCCceEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHH-----------HhCCCCEEEEeCCCCCCCHHHHHHH
Confidence 34568999999999999999999999999999999999999988 3457999999999999999999999
Q ss_pred HhccCCCCCCcEEEEeCCCcHHHHHHHHHcCCceEEeCCCCHHHHHHHHHHHhhh
Q 026776 106 IKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVKLSDVKRIKDYLTRD 160 (233)
Q Consensus 106 Lr~~~~~~~~piIvlt~~~~~~~~~~al~~Ga~dyL~KP~~~~eL~~~~~~l~~~ 160 (233)
||+..+ .+|||++|+..+.....+++++|+++||.||++.++|...++.+.+.
T Consensus 89 lr~~~~--~~~ii~lt~~~~~~~~~~~~~~Ga~~yl~Kp~~~~~L~~~i~~~~~~ 141 (250)
T 3r0j_A 89 LRADGI--DAPALFLTARDSLQDKIAGLTLGGDDYVTKPFSLEEVVARLRVILRR 141 (250)
T ss_dssp HHHTTC--CCCEEEEECSTTHHHHHHHHTSTTCEEEESSCCHHHHHHHHHHHHHH
T ss_pred HHhcCC--CCCEEEEECCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHh
Confidence 998765 89999999999999999999999999999999999998777776554
No 28
>2zay_A Response regulator receiver protein; structural genomics, NYSGXRC, target 11006U, protein structure initiative; 2.00A {Desulfuromonas acetoxidans}
Probab=99.87 E-value=3.3e-21 Score=146.42 Aligned_cols=125 Identities=20% Similarity=0.269 Sum_probs=110.1
Q ss_pred CCCCcEEEEEeCCHHHHHHHHHHHhhcCCEEEEECCHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCCCCCHHHHHHH
Q 026776 26 DTEEVHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKK 105 (233)
Q Consensus 26 ~~~~~~ILIVddd~~~~~~l~~~L~~~g~~v~~a~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp~~~g~~ll~~ 105 (233)
....++||||||++..+..+...|...||+|..+.++.++++.+. ...||+||+|+.||+++|+++++.
T Consensus 5 ~~~~~~iLivd~~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~-----------~~~~dlii~d~~l~~~~g~~~~~~ 73 (147)
T 2zay_A 5 EGKWWRIMLVDTQLPALAASISALSQEGFDIIQCGNAIEAVPVAV-----------KTHPHLIITEANMPKISGMDLFNS 73 (147)
T ss_dssp ---CEEEEEECTTGGGGHHHHHHHHHHTEEEEEESSHHHHHHHHH-----------HHCCSEEEEESCCSSSCHHHHHHH
T ss_pred cCCCceEEEEeCCHHHHHHHHHHHHHcCCeEEEeCCHHHHHHHHH-----------cCCCCEEEEcCCCCCCCHHHHHHH
Confidence 445789999999999999999999999999999999999999883 446999999999999999999999
Q ss_pred HhccCCCCCCcEEEEeCCCcHHHHHHHHHcCCceEEeCCCCHHHHHHHHHHHhhhh
Q 026776 106 IKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVKLSDVKRIKDYLTRDV 161 (233)
Q Consensus 106 Lr~~~~~~~~piIvlt~~~~~~~~~~al~~Ga~dyL~KP~~~~eL~~~~~~l~~~~ 161 (233)
|++......+|||++++..+.....++++.|+++||.||++.++|...+..+.+..
T Consensus 74 l~~~~~~~~~pii~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~L~~~i~~~~~~~ 129 (147)
T 2zay_A 74 LKKNPQTASIPVIALSGRATAKEEAQLLDMGFIDFIAKPVNAIRLSARIKRVLKLL 129 (147)
T ss_dssp HHTSTTTTTSCEEEEESSCCHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHHHH
T ss_pred HHcCcccCCCCEEEEeCCCCHHHHHHHHhCCCCEEEeCCCCHHHHHHHHHHHHHHH
Confidence 99843345899999999999999999999999999999999999988777665543
No 29
>3i42_A Response regulator receiver domain protein (CHEY- like); structural genomics, PSI-2, protein structure initiative; 2.15A {Methylobacillus flagellatus KT} SCOP: c.23.1.0
Probab=99.87 E-value=1.5e-21 Score=144.82 Aligned_cols=120 Identities=18% Similarity=0.229 Sum_probs=106.5
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHhhcCCEEEEECCHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCCCCCHHHHHHHHh
Q 026776 28 EEVHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKKIK 107 (233)
Q Consensus 28 ~~~~ILIVddd~~~~~~l~~~L~~~g~~v~~a~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp~~~g~~ll~~Lr 107 (233)
.+++||||||++..+..+..+|+..||.|..+.++.++++.+ ....||+||+|+.||+++|+++++.||
T Consensus 2 ~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l-----------~~~~~dlii~D~~l~~~~g~~~~~~l~ 70 (127)
T 3i42_A 2 SLQQALIVEDYQAAAETFKELLEMLGFQADYVMSGTDALHAM-----------STRGYDAVFIDLNLPDTSGLALVKQLR 70 (127)
T ss_dssp CCEEEEEECSCHHHHHHHHHHHHHTTEEEEEESSHHHHHHHH-----------HHSCCSEEEEESBCSSSBHHHHHHHHH
T ss_pred CcceEEEEcCCHHHHHHHHHHHHHcCCCEEEECCHHHHHHHH-----------HhcCCCEEEEeCCCCCCCHHHHHHHHH
Confidence 358999999999999999999999999999999999999998 345799999999999999999999999
Q ss_pred ccCCCCCCcEEEEeCCCcHHHHHHHHHcCCceEEeCCCCHHHHHHHHHHHhh
Q 026776 108 DSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVKLSDVKRIKDYLTR 159 (233)
Q Consensus 108 ~~~~~~~~piIvlt~~~~~~~~~~al~~Ga~dyL~KP~~~~eL~~~~~~l~~ 159 (233)
+......+|+|++++..+... ..++..|+++||.||++.++|.+.+....+
T Consensus 71 ~~~~~~~~~ii~~s~~~~~~~-~~~~~~g~~~~l~KP~~~~~L~~~i~~~~~ 121 (127)
T 3i42_A 71 ALPMEKTSKFVAVSGFAKNDL-GKEACELFDFYLEKPIDIASLEPILQSIEG 121 (127)
T ss_dssp HSCCSSCCEEEEEECC-CTTC-CHHHHHHCSEEEESSCCHHHHHHHHHHHC-
T ss_pred hhhccCCCCEEEEECCcchhH-HHHHHHhhHHheeCCCCHHHHHHHHHHhhc
Confidence 874445899999999987777 789999999999999999999877765543
No 30
>4e7p_A Response regulator; DNA binding, cytosol, transcription regulator; 1.89A {Streptococcus pneumoniae} PDB: 4e7o_A
Probab=99.87 E-value=9.6e-21 Score=144.78 Aligned_cols=122 Identities=25% Similarity=0.395 Sum_probs=109.7
Q ss_pred CCCCcEEEEEeCCHHHHHHHHHHHhhcC--CEEEEECCHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCCCCCHHHHH
Q 026776 26 DTEEVHVLAVDDSFVDRKVIERLLTISS--CKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELL 103 (233)
Q Consensus 26 ~~~~~~ILIVddd~~~~~~l~~~L~~~g--~~v~~a~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp~~~g~~ll 103 (233)
....++||||||++..+..+..+|+..| +.+..+.++.++++.+ ....||+||+|+.||+++|++++
T Consensus 17 ~~~m~~iLivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~al~~l-----------~~~~~dlii~D~~l~~~~g~~~~ 85 (150)
T 4e7p_A 17 RGSHMKVLVAEDQSMLRDAMCQLLTLQPDVESVLQAKNGQEAIQLL-----------EKESVDIAILDVEMPVKTGLEVL 85 (150)
T ss_dssp ---CEEEEEECSCHHHHHHHHHHHHTSTTEEEEEEESSHHHHHHHH-----------TTSCCSEEEECSSCSSSCHHHHH
T ss_pred CCCccEEEEEcCCHHHHHHHHHHHHhCCCcEEEEEECCHHHHHHHh-----------hccCCCEEEEeCCCCCCcHHHHH
Confidence 3456899999999999999999999887 7899999999999998 56679999999999999999999
Q ss_pred HHHhccCCCCCCcEEEEeCCCcHHHHHHHHHcCCceEEeCCCCHHHHHHHHHHHhhh
Q 026776 104 KKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVKLSDVKRIKDYLTRD 160 (233)
Q Consensus 104 ~~Lr~~~~~~~~piIvlt~~~~~~~~~~al~~Ga~dyL~KP~~~~eL~~~~~~l~~~ 160 (233)
+.|++..+ .+|||++++..+.....++++.|+++||.||++.++|...++.+.+.
T Consensus 86 ~~l~~~~~--~~~ii~ls~~~~~~~~~~~~~~g~~~~l~Kp~~~~~l~~~i~~~~~~ 140 (150)
T 4e7p_A 86 EWIRSEKL--ETKVVVVTTFKRAGYFERAVKAGVDAYVLKERSIADLMQTLHTVLEG 140 (150)
T ss_dssp HHHHHTTC--SCEEEEEESCCCHHHHHHHHHTTCSEEEETTSCHHHHHHHHHHHHTT
T ss_pred HHHHHhCC--CCeEEEEeCCCCHHHHHHHHHCCCcEEEecCCCHHHHHHHHHHHHcC
Confidence 99998755 89999999999999999999999999999999999998887776543
No 31
>1xhf_A DYE resistance, aerobic respiration control protein ARCA; two-component system, gene regulation, transcription factor, anoxic redox control; 2.15A {Escherichia coli} SCOP: c.23.1.1 PDB: 1xhe_A
Probab=99.87 E-value=8.1e-21 Score=139.86 Aligned_cols=118 Identities=23% Similarity=0.425 Sum_probs=106.5
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHhhcCCEEEEECCHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCCCCCHHHHHHHHh
Q 026776 28 EEVHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKKIK 107 (233)
Q Consensus 28 ~~~~ILIVddd~~~~~~l~~~L~~~g~~v~~a~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp~~~g~~ll~~Lr 107 (233)
+..+||||||++..+..++..|+..||.+..+.++.++++.+ ....||+||+|+.||+++|+++++.|+
T Consensus 2 ~~~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~~-----------~~~~~dlvi~D~~l~~~~g~~~~~~l~ 70 (123)
T 1xhf_A 2 QTPHILIVEDELVTRNTLKSIFEAEGYDVFEATDGAEMHQIL-----------SEYDINLVIMDINLPGKNGLLLARELR 70 (123)
T ss_dssp CCCEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHH-----------HHSCCSEEEECSSCSSSCHHHHHHHHH
T ss_pred CCceEEEEeCCHHHHHHHHHHHhhCCcEEEEeCCHHHHHHHH-----------hcCCCCEEEEcCCCCCCCHHHHHHHHH
Confidence 356899999999999999999999999999999999999988 345799999999999999999999999
Q ss_pred ccCCCCCCcEEEEeCCCcHHHHHHHHHcCCceEEeCCCCHHHHHHHHHHHhh
Q 026776 108 DSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVKLSDVKRIKDYLTR 159 (233)
Q Consensus 108 ~~~~~~~~piIvlt~~~~~~~~~~al~~Ga~dyL~KP~~~~eL~~~~~~l~~ 159 (233)
+. + .+|+|++++..+.....++++.|+++|+.||++.++|...++.+.+
T Consensus 71 ~~-~--~~~ii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~ 119 (123)
T 1xhf_A 71 EQ-A--NVALMFLTGRDNEVDKILGLEIGADDYITKPFNPRELTIRARNLLS 119 (123)
T ss_dssp HH-C--CCEEEEEESCCSHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHH
T ss_pred hC-C--CCcEEEEECCCChHHHHHHHhcCcceEEeCCCCHHHHHHHHHHHHH
Confidence 86 3 7899999999988888999999999999999999999877665543
No 32
>3snk_A Response regulator CHEY-like protein; P-loop containing nucleoside triphosphate hydrolases, struct genomics; 2.02A {Mesorhizobium loti}
Probab=99.87 E-value=3.2e-22 Score=150.25 Aligned_cols=119 Identities=13% Similarity=0.112 Sum_probs=108.8
Q ss_pred CCCcEEEEEeCCHHHHHHHHHHHhhcC-CEEEEECCHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCCCCCHHHHHHH
Q 026776 27 TEEVHVLAVDDSFVDRKVIERLLTISS-CKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKK 105 (233)
Q Consensus 27 ~~~~~ILIVddd~~~~~~l~~~L~~~g-~~v~~a~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp~~~g~~ll~~ 105 (233)
....+||||||++..+..++.+|+..| |++..+.++.++++.+ ....||+||+|+.||+++|+++++.
T Consensus 12 ~~~~~ilivdd~~~~~~~l~~~L~~~g~~~v~~~~~~~~a~~~l-----------~~~~~dlvi~D~~l~~~~g~~~~~~ 80 (135)
T 3snk_A 12 TKRKQVALFSSDPNFKRDVATRLDALAIYDVRVSETDDFLKGPP-----------ADTRPGIVILDLGGGDLLGKPGIVE 80 (135)
T ss_dssp -CCEEEEEECSCHHHHHHHHHHHHHTSSEEEEEECGGGGGGCCC-----------TTCCCSEEEEEEETTGGGGSTTHHH
T ss_pred CCCcEEEEEcCCHHHHHHHHHHHhhcCCeEEEEeccHHHHHHHH-----------hccCCCEEEEeCCCCCchHHHHHHH
Confidence 456899999999999999999999999 9999999999998877 5678999999999999999999999
Q ss_pred HhccCCCCCCcEEEEeCCCcHHHHHHHHHcCCceEEeCCCCHHHHHHHHHHHh
Q 026776 106 IKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVKLSDVKRIKDYLT 158 (233)
Q Consensus 106 Lr~~~~~~~~piIvlt~~~~~~~~~~al~~Ga~dyL~KP~~~~eL~~~~~~l~ 158 (233)
||+..+ .+|+|++|+..+.+...++++.|+++||.||++.++|...++.+.
T Consensus 81 l~~~~~--~~~ii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~L~~~i~~~~ 131 (135)
T 3snk_A 81 ARALWA--TVPLIAVSDELTSEQTRVLVRMNASDWLHKPLDGKELLNAVTFHD 131 (135)
T ss_dssp HHGGGT--TCCEEEEESCCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHTC
T ss_pred HHhhCC--CCcEEEEeCCCCHHHHHHHHHcCcHhhccCCCCHHHHHHHHHHHh
Confidence 999876 899999999999999999999999999999999999987776543
No 33
>2qzj_A Two-component response regulator; 11017X, PSI-II, structural genomics; 2.89A {Clostridium difficile}
Probab=99.87 E-value=4.4e-21 Score=144.57 Aligned_cols=119 Identities=21% Similarity=0.315 Sum_probs=107.6
Q ss_pred CcEEEEEeCCHHHHHHHHHHHhhcCCEEEEECCHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCCCCCHHHHHHHHhc
Q 026776 29 EVHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKKIKD 108 (233)
Q Consensus 29 ~~~ILIVddd~~~~~~l~~~L~~~g~~v~~a~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp~~~g~~ll~~Lr~ 108 (233)
.++||||||++..+..+..+|...||.+..+.++.++++.+. ...||+||+|+.||+++|+++++.|++
T Consensus 4 ~~~Ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~-----------~~~~dlvllD~~l~~~~g~~l~~~l~~ 72 (136)
T 2qzj_A 4 QTKILIIDGDKDNCQKLKGFLEEKGISIDLAYNCEEAIGKIF-----------SNKYDLIFLEIILSDGDGWTLCKKIRN 72 (136)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHH-----------HCCCSEEEEESEETTEEHHHHHHHHHT
T ss_pred CCeEEEEcCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHH-----------hcCCCEEEEeCCCCCCCHHHHHHHHcc
Confidence 578999999999999999999999999999999999999883 457999999999999999999999997
Q ss_pred cCCCCCCcEEEEeCCCcHHHHHHHHHcCCceEEeCCCCHHHHHHHHHHHhhhh
Q 026776 109 SSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVKLSDVKRIKDYLTRDV 161 (233)
Q Consensus 109 ~~~~~~~piIvlt~~~~~~~~~~al~~Ga~dyL~KP~~~~eL~~~~~~l~~~~ 161 (233)
.. .+|+|++++..+.....++++.|+++||.||++.++|...++.+.+..
T Consensus 73 ~~---~~~ii~ls~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~l~~~~~~~ 122 (136)
T 2qzj_A 73 VT---TCPIVYMTYINEDQSILNALNSGGDDYLIKPLNLEILYAKVKAILRRM 122 (136)
T ss_dssp TC---CCCEEEEESCCCHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHHHHH
T ss_pred CC---CCCEEEEEcCCCHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHHHh
Confidence 53 789999999998888999999999999999999999988777665543
No 34
>1zgz_A Torcad operon transcriptional regulatory protein; two-component system, gene regulation, transcription factor, respiratory system; 1.80A {Escherichia coli} SCOP: c.23.1.1
Probab=99.87 E-value=1.1e-20 Score=138.97 Aligned_cols=117 Identities=21% Similarity=0.365 Sum_probs=105.7
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhcCCEEEEECCHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCCCCCHHHHHHHHhcc
Q 026776 30 VHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKKIKDS 109 (233)
Q Consensus 30 ~~ILIVddd~~~~~~l~~~L~~~g~~v~~a~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp~~~g~~ll~~Lr~~ 109 (233)
.+||||||++..+..+...|+..||.+..+.++.++++.+ ....||+||+|+.||+++|+++++.|++
T Consensus 3 ~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~-----------~~~~~dlvi~d~~l~~~~g~~~~~~l~~- 70 (122)
T 1zgz_A 3 HHIVIVEDEPVTQARLQSYFTQEGYTVSVTASGAGLREIM-----------QNQSVDLILLDINLPDENGLMLTRALRE- 70 (122)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHTTCEEEEESSHHHHHHHH-----------HHSCCSEEEEESCCSSSCHHHHHHHHHT-
T ss_pred cEEEEEECCHHHHHHHHHHHHHCCCeEEEecCHHHHHHHH-----------hcCCCCEEEEeCCCCCCChHHHHHHHHh-
Confidence 5899999999999999999999999999999999999987 3456999999999999999999999998
Q ss_pred CCCCCCcEEEEeCCCcHHHHHHHHHcCCceEEeCCCCHHHHHHHHHHHhhh
Q 026776 110 SALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVKLSDVKRIKDYLTRD 160 (233)
Q Consensus 110 ~~~~~~piIvlt~~~~~~~~~~al~~Ga~dyL~KP~~~~eL~~~~~~l~~~ 160 (233)
.+ .+|+|++++..+.....++++.|+++|+.||++.++|...++.+.++
T Consensus 71 ~~--~~~ii~~s~~~~~~~~~~~~~~ga~~~l~Kp~~~~~l~~~i~~~~~~ 119 (122)
T 1zgz_A 71 RS--TVGIILVTGRSDRIDRIVGLEMGADDYVTKPLELRELVVRVKNLLWR 119 (122)
T ss_dssp TC--CCEEEEEESSCCHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHHH
T ss_pred cC--CCCEEEEECCCChhhHHHHHHhCHHHHccCCCCHHHHHHHHHHHHHH
Confidence 33 78999999999888889999999999999999999998777665543
No 35
>1k68_A Phytochrome response regulator RCPA; phosphorylated aspartate, CHEY homologue, homodimer, (beta/alpha)5, signaling protein; HET: PHD; 1.90A {Tolypothrix SP} SCOP: c.23.1.1
Probab=99.87 E-value=1.8e-20 Score=140.34 Aligned_cols=129 Identities=26% Similarity=0.371 Sum_probs=110.5
Q ss_pred CcEEEEEeCCHHHHHHHHHHHhhcCC--EEEEECCHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCCCCCHHHHHHHH
Q 026776 29 EVHVLAVDDSFVDRKVIERLLTISSC--KVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKKI 106 (233)
Q Consensus 29 ~~~ILIVddd~~~~~~l~~~L~~~g~--~v~~a~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp~~~g~~ll~~L 106 (233)
+++||||||++..+..+...|+..|+ .+..+.++.++++.+....... ....||+||+|+.||+++|+++++.|
T Consensus 2 ~~~ilivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~a~~~l~~~~~~~----~~~~~dlvi~d~~~~~~~g~~~~~~l 77 (140)
T 1k68_A 2 HKKIFLVEDNKADIRLIQEALANSTVPHEVVTVRDGMEAMAYLRQEGEYA----NASRPDLILLXLNLPKKDGREVLAEI 77 (140)
T ss_dssp CCEEEEECCCHHHHHHHHHHHHTCSSCCEEEEECSHHHHHHHHTTCGGGG----SCCCCSEEEECSSCSSSCHHHHHHHH
T ss_pred CCeEEEEeCCHHHHHHHHHHHHhcCCCceEEEECCHHHHHHHHHcccccc----cCCCCcEEEEecCCCcccHHHHHHHH
Confidence 57899999999999999999999998 9999999999999983100000 01579999999999999999999999
Q ss_pred hccCCCCCCcEEEEeCCCcHHHHHHHHHcCCceEEeCCCCHHHHHHHHHHHhhhh
Q 026776 107 KDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVKLSDVKRIKDYLTRDV 161 (233)
Q Consensus 107 r~~~~~~~~piIvlt~~~~~~~~~~al~~Ga~dyL~KP~~~~eL~~~~~~l~~~~ 161 (233)
++......+|+|++++..+.+...++++.|+++|+.||++.++|...++.+.+..
T Consensus 78 ~~~~~~~~~pii~ls~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~~~~ 132 (140)
T 1k68_A 78 KSDPTLKRIPVVVLSTSINEDDIFHSYDLHVNCYITKSANLSQLFQIVKGIEEFW 132 (140)
T ss_dssp HHSTTGGGSCEEEEESCCCHHHHHHHHHTTCSEEEECCSSHHHHHHHHHHHHHHH
T ss_pred HcCcccccccEEEEecCCcHHHHHHHHHhchhheecCCCCHHHHHHHHHHHHHHH
Confidence 9875334899999999999889999999999999999999999988777765543
No 36
>3hdg_A Uncharacterized protein; two-component sensor activity, response regulator, PSI-II, 11227F, NYSGXRC, structural genomics; 2.27A {Wolinella succinogenes} SCOP: c.23.1.0
Probab=99.87 E-value=3.2e-21 Score=144.84 Aligned_cols=121 Identities=22% Similarity=0.326 Sum_probs=110.8
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHhhcCCEEEEECCHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCCCCCHHHHHHHHh
Q 026776 28 EEVHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKKIK 107 (233)
Q Consensus 28 ~~~~ILIVddd~~~~~~l~~~L~~~g~~v~~a~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp~~~g~~ll~~Lr 107 (233)
..++||||||++..+..+..+|+..|+.+..+.++.++++.+. ...||+||+|+.||+++|+++++.|+
T Consensus 6 ~~~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~a~~~l~-----------~~~~dlvi~d~~l~~~~g~~~~~~l~ 74 (137)
T 3hdg_A 6 VALKILIVEDDTDAREWLSTIISNHFPEVWSAGDGEEGERLFG-----------LHAPDVIITDIRMPKLGGLEMLDRIK 74 (137)
T ss_dssp -CCCEEEECSCHHHHHHHHHHHHTTCSCEEEESSHHHHHHHHH-----------HHCCSEEEECSSCSSSCHHHHHHHHH
T ss_pred cccEEEEEeCCHHHHHHHHHHHHhcCcEEEEECCHHHHHHHHh-----------ccCCCEEEEeCCCCCCCHHHHHHHHH
Confidence 4689999999999999999999999999999999999999983 45799999999999999999999999
Q ss_pred ccCCCCCCcEEEEeCCCcHHHHHHHHHcCCceEEeCCCCHHHHHHHHHHHhhhh
Q 026776 108 DSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVKLSDVKRIKDYLTRDV 161 (233)
Q Consensus 108 ~~~~~~~~piIvlt~~~~~~~~~~al~~Ga~dyL~KP~~~~eL~~~~~~l~~~~ 161 (233)
+..+ .+|||++++..+.+...++++.|+++||.||++.++|...++.+.+..
T Consensus 75 ~~~~--~~~ii~~s~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~~~~ 126 (137)
T 3hdg_A 75 AGGA--KPYVIVISAFSEMKYFIKAIELGVHLFLPKPIEPGRLMETLEDFRHIK 126 (137)
T ss_dssp HTTC--CCEEEECCCCCCHHHHHHHHHHCCSEECCSSCCHHHHHHHHHHHHHHH
T ss_pred hcCC--CCcEEEEecCcChHHHHHHHhCCcceeEcCCCCHHHHHHHHHHHHHHH
Confidence 8765 899999999999999999999999999999999999988888777654
No 37
>3b2n_A Uncharacterized protein Q99UF4; structural genomics, PSI-2, protein structure initiative, NE SGX research center for structural genomics; 2.04A {Staphylococcus aureus}
Probab=99.87 E-value=5.8e-21 Score=143.12 Aligned_cols=118 Identities=18% Similarity=0.381 Sum_probs=105.9
Q ss_pred CcEEEEEeCCHHHHHHHHHHHhhcC--CEEEEECCHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCCCCCHHHHHHHH
Q 026776 29 EVHVLAVDDSFVDRKVIERLLTISS--CKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKKI 106 (233)
Q Consensus 29 ~~~ILIVddd~~~~~~l~~~L~~~g--~~v~~a~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp~~~g~~ll~~L 106 (233)
.++|||+||++..+..+..+|+..| +.+..+.++.++++.+. ...||+||+|+.||+++|+++++.|
T Consensus 3 ~~~Ilivdd~~~~~~~l~~~l~~~~~~~~v~~~~~~~~al~~~~-----------~~~~dlvilD~~lp~~~g~~~~~~l 71 (133)
T 3b2n_A 3 LTSLIIAEDQNMLRQAMVQLIKLHGDFEILADTDNGLDAMKLIE-----------EYNPNVVILDIEMPGMTGLEVLAEI 71 (133)
T ss_dssp CEEEEEECSCHHHHHHHHHHHHHHSSEEEEEEESCHHHHHHHHH-----------HHCCSEEEECSSCSSSCHHHHHHHH
T ss_pred ceEEEEECCCHHHHHHHHHHHhhCCCcEEEEEcCCHHHHHHHHh-----------hcCCCEEEEecCCCCCCHHHHHHHH
Confidence 4789999999999999999999876 56778999999999883 3469999999999999999999999
Q ss_pred hccCCCCCCcEEEEeCCCcHHHHHHHHHcCCceEEeCCCCHHHHHHHHHHHhh
Q 026776 107 KDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVKLSDVKRIKDYLTR 159 (233)
Q Consensus 107 r~~~~~~~~piIvlt~~~~~~~~~~al~~Ga~dyL~KP~~~~eL~~~~~~l~~ 159 (233)
++..+ .+|||++|+..+.....++++.|+++||.||++.++|...++.+.+
T Consensus 72 ~~~~~--~~~ii~ls~~~~~~~~~~~~~~ga~~~l~Kp~~~~~L~~~i~~~~~ 122 (133)
T 3b2n_A 72 RKKHL--NIKVIIVTTFKRPGYFEKAVVNDVDAYVLKERSIEELVETINKVNN 122 (133)
T ss_dssp HHTTC--SCEEEEEESCCCHHHHHHHHHTTCSEEEETTSCHHHHHHHHHHHHC
T ss_pred HHHCC--CCcEEEEecCCCHHHHHHHHHcCCcEEEECCCCHHHHHHHHHHHHc
Confidence 98654 8999999999998899999999999999999999999887776654
No 38
>3cnb_A DNA-binding response regulator, MERR family; signal receiver domain, DNA binding protein, protein structu initiative, PSI-2; 2.00A {Colwellia psychrerythraea}
Probab=99.86 E-value=9.9e-21 Score=142.62 Aligned_cols=123 Identities=20% Similarity=0.309 Sum_probs=109.0
Q ss_pred CCCcEEEEEeCCHHHHHHHHHHHhh-cCCE-EEEECCHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCCCCCHHHHHH
Q 026776 27 TEEVHVLAVDDSFVDRKVIERLLTI-SSCK-VTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLK 104 (233)
Q Consensus 27 ~~~~~ILIVddd~~~~~~l~~~L~~-~g~~-v~~a~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp~~~g~~ll~ 104 (233)
...++||||||++..+..+..+|+. .||. +..+.++.++++.+. ...||+||+|+.||+++|+++++
T Consensus 6 ~~~~~iLivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~a~~~l~-----------~~~~dlii~d~~l~~~~g~~~~~ 74 (143)
T 3cnb_A 6 KNDFSILIIEDDKEFADMLTQFLENLFPYAKIKIAYNPFDAGDLLH-----------TVKPDVVMLDLMMVGMDGFSICH 74 (143)
T ss_dssp ---CEEEEECSCHHHHHHHHHHHHHHCTTCEEEEECSHHHHHHHHH-----------HTCCSEEEEETTCTTSCHHHHHH
T ss_pred cCCceEEEEECCHHHHHHHHHHHHhccCccEEEEECCHHHHHHHHH-----------hcCCCEEEEecccCCCcHHHHHH
Confidence 4578999999999999999999999 8998 999999999999883 45699999999999999999999
Q ss_pred HHhccCCCCCCcEEEEeCCCcHHHHHHHHHcCCceEEeCCCCHHHHHHHHHHHhhh
Q 026776 105 KIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVKLSDVKRIKDYLTRD 160 (233)
Q Consensus 105 ~Lr~~~~~~~~piIvlt~~~~~~~~~~al~~Ga~dyL~KP~~~~eL~~~~~~l~~~ 160 (233)
.|++......+|+|++++..+.....++++.|+++||.||++.++|...++.+.+.
T Consensus 75 ~l~~~~~~~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~~~ 130 (143)
T 3cnb_A 75 RIKSTPATANIIVIAMTGALTDDNVSRIVALGAETCFGKPLNFTLLEKTIKQLVEQ 130 (143)
T ss_dssp HHHTSTTTTTSEEEEEESSCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHHT
T ss_pred HHHhCccccCCcEEEEeCCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHHh
Confidence 99985444589999999999988889999999999999999999998887776654
No 39
>1tmy_A CHEY protein, TMY; chemotaxis, phosphoryl transfer, signal transduction; 1.90A {Thermotoga maritima} SCOP: c.23.1.1 PDB: 2tmy_A 3tmy_A 4tmy_A 1u0s_Y
Probab=99.86 E-value=5.3e-21 Score=140.25 Aligned_cols=115 Identities=28% Similarity=0.428 Sum_probs=104.4
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhcCCE-EEEECCHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCCCCCHHHHHHHHhc
Q 026776 30 VHVLAVDDSFVDRKVIERLLTISSCK-VTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKKIKD 108 (233)
Q Consensus 30 ~~ILIVddd~~~~~~l~~~L~~~g~~-v~~a~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp~~~g~~ll~~Lr~ 108 (233)
++||||||++..+..++..|+..||. +..+.++.++++.+. ...||+||+|+.||+++|++++++|++
T Consensus 3 ~~ilivdd~~~~~~~l~~~l~~~g~~vv~~~~~~~~a~~~~~-----------~~~~dlil~D~~l~~~~g~~~~~~l~~ 71 (120)
T 1tmy_A 3 KRVLIVDDAAFMRMMLKDIITKAGYEVAGEATNGREAVEKYK-----------ELKPDIVTMDITMPEMNGIDAIKEIMK 71 (120)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHH-----------HHCCSEEEEECSCGGGCHHHHHHHHHH
T ss_pred ceEEEEcCcHHHHHHHHHHHhhcCcEEEEEECCHHHHHHHHH-----------hcCCCEEEEeCCCCCCcHHHHHHHHHh
Confidence 68999999999999999999999998 568999999999883 346999999999999999999999998
Q ss_pred cCCCCCCcEEEEeCCCcHHHHHHHHHcCCceEEeCCCCHHHHHHHHHHH
Q 026776 109 SSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVKLSDVKRIKDYL 157 (233)
Q Consensus 109 ~~~~~~~piIvlt~~~~~~~~~~al~~Ga~dyL~KP~~~~eL~~~~~~l 157 (233)
..+ .+|+|++++..+.....++++.|+++|+.||++.++|...++.+
T Consensus 72 ~~~--~~~ii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~ 118 (120)
T 1tmy_A 72 IDP--NAKIIVCSAMGQQAMVIEAIKAGAKDFIVKPFQPSRVVEALNKV 118 (120)
T ss_dssp HCT--TCCEEEEECTTCHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHH
T ss_pred hCC--CCeEEEEeCCCCHHHHHHHHHhCcceeEeCCCCHHHHHHHHHHH
Confidence 755 89999999999988899999999999999999999998776654
No 40
>3cfy_A Putative LUXO repressor protein; structural genomics, unknown function, uncharacterized protein, signal receiver domain; 2.50A {Vibrio parahaemolyticus rimd 2210633}
Probab=99.86 E-value=3.9e-21 Score=145.04 Aligned_cols=118 Identities=26% Similarity=0.394 Sum_probs=107.1
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhcCCEEEEECCHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCCCCCHHHHHHHHhcc
Q 026776 30 VHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKKIKDS 109 (233)
Q Consensus 30 ~~ILIVddd~~~~~~l~~~L~~~g~~v~~a~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp~~~g~~ll~~Lr~~ 109 (233)
.+||||||++..+..++.+|...||.|..+.++.++++.+. ...||+||+|+.||+++|+++++.|++.
T Consensus 5 ~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~-----------~~~~dlvllD~~l~~~~g~~l~~~l~~~ 73 (137)
T 3cfy_A 5 PRVLLVEDSTSLAILYKQYVKDEPYDIFHVETGRDAIQFIE-----------RSKPQLIILDLKLPDMSGEDVLDWINQN 73 (137)
T ss_dssp CEEEEECSCTTHHHHHHHHTTTSSSEEEEESSHHHHHHHHH-----------HHCCSEEEECSBCSSSBHHHHHHHHHHT
T ss_pred ceEEEEeCCHHHHHHHHHHHHhcCceEEEeCCHHHHHHHHH-----------hcCCCEEEEecCCCCCCHHHHHHHHHhc
Confidence 48999999999999999999999999999999999999883 4469999999999999999999999987
Q ss_pred CCCCCCcEEEEeCCCcHHHHHHHHHcCCceEEeCCCCHHHHHHHHHHHhhh
Q 026776 110 SALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVKLSDVKRIKDYLTRD 160 (233)
Q Consensus 110 ~~~~~~piIvlt~~~~~~~~~~al~~Ga~dyL~KP~~~~eL~~~~~~l~~~ 160 (233)
.+ .+|+|++++..+.....++++.|+++||.||++.++|...++.+.+.
T Consensus 74 ~~--~~~ii~ls~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~~~~ 122 (137)
T 3cfy_A 74 DI--PTSVIIATAHGSVDLAVNLIQKGAEDFLEKPINADRLKTSVALHLKR 122 (137)
T ss_dssp TC--CCEEEEEESSCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHHH
T ss_pred CC--CCCEEEEEecCcHHHHHHHHHCCccEEEeCCCCHHHHHHHHHHHHHH
Confidence 54 89999999999888999999999999999999999998777666543
No 41
>1mb3_A Cell division response regulator DIVK; signal transduction protein, structural proteomics in europe, spine, structural genomics; 1.41A {Caulobacter vibrioides} SCOP: c.23.1.1 PDB: 1m5u_A 1mav_A 1mb0_A 1m5t_A
Probab=99.86 E-value=4.4e-21 Score=141.30 Aligned_cols=118 Identities=28% Similarity=0.407 Sum_probs=101.0
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhcCCEEEEECCHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCCCCCHHHHHHHHhcc
Q 026776 30 VHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKKIKDS 109 (233)
Q Consensus 30 ~~ILIVddd~~~~~~l~~~L~~~g~~v~~a~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp~~~g~~ll~~Lr~~ 109 (233)
.+||||||++..+..++.+|+..||.+..+.++.+++..+. ...||+||+|+.||+++|+++++.|++.
T Consensus 2 ~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~a~~~~~-----------~~~~dlvi~D~~l~~~~g~~~~~~l~~~ 70 (124)
T 1mb3_A 2 KKVLIVEDNELNMKLFHDLLEAQGYETLQTREGLSALSIAR-----------ENKPDLILMDIQLPEISGLEVTKWLKED 70 (124)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESCHHHHHHHHH-----------HHCCSEEEEESBCSSSBHHHHHHHHHHS
T ss_pred cEEEEEcCCHHHHHHHHHHHHHcCcEEEEeCCHHHHHHHHh-----------cCCCCEEEEeCCCCCCCHHHHHHHHHcC
Confidence 47999999999999999999999999999999999999883 3469999999999999999999999986
Q ss_pred CCCCCCcEEEEeCCCcHHHHHHHHHcCCceEEeCCCCHHHHHHHHHHHh
Q 026776 110 SALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVKLSDVKRIKDYLT 158 (233)
Q Consensus 110 ~~~~~~piIvlt~~~~~~~~~~al~~Ga~dyL~KP~~~~eL~~~~~~l~ 158 (233)
...+.+|+|++++..+.....++++.|+++||.||++.++|...++.+.
T Consensus 71 ~~~~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~ 119 (124)
T 1mb3_A 71 DDLAHIPVVAVTAFAMKGDEERIREGGCEAYISKPISVVHFLETIKRLL 119 (124)
T ss_dssp TTTTTSCEEEEC------CHHHHHHHTCSEEECSSCCHHHHHHHHHHHH
T ss_pred ccccCCcEEEEECCCCHHHHHHHHhCCCCEEEeCCCCHHHHHHHHHHHH
Confidence 5445899999999888888889999999999999999999987776654
No 42
>3mm4_A Histidine kinase homolog; receiver domain, CKI1, cytokinin signaling, ROS fold, CHEY-like, transferase; 2.00A {Arabidopsis thaliana} PDB: 3mmn_A
Probab=99.86 E-value=5e-21 Score=154.91 Aligned_cols=133 Identities=25% Similarity=0.387 Sum_probs=107.3
Q ss_pred CCCCcEEEEEeCCHHHHHHHHHHHhhcCC-EEEEECCHHHHHHHhhhhh--hhhccCCCCCcccEEEEcCCCCCCCHHHH
Q 026776 26 DTEEVHVLAVDDSFVDRKVIERLLTISSC-KVTAVDSGRRALQFLGLDE--EQSINGFDGLKVDLIITDYCMPGMTGYEL 102 (233)
Q Consensus 26 ~~~~~~ILIVddd~~~~~~l~~~L~~~g~-~v~~a~~~~~al~~l~~~~--~~~~~~~~~~~~DlvllD~~mp~~~g~~l 102 (233)
...+.+||||||++..+..+..+|+..|| .|..+.++.+|++.+.... .+.........||+||+|+.||+++|+++
T Consensus 58 ~~~~~~ILiVdDd~~~~~~l~~~L~~~g~~~v~~a~~~~eal~~l~~~~~~~~~~~~~~~~~~dlillD~~lp~~~G~el 137 (206)
T 3mm4_A 58 FLRGKRVLVVDDNFISRKVATGKLKKMGVSEVEQCDSGKEALRLVTEGLTQREEQGSVDKLPFDYIFMDCQMPEMDGYEA 137 (206)
T ss_dssp TTTTCEEEEECSCHHHHHHHHHHHHHTTCSEEEEESSHHHHHHHHHHHHHHHHHHTCSSCCSCSEEEEESCCSSSCHHHH
T ss_pred ccCCCEEEEEeCCHHHHHHHHHHHHHcCCCeeeeeCCHHHHHHHHHhhcccccccccccCCCCCEEEEcCCCCCCCHHHH
Confidence 35678999999999999999999999998 8999999999999985310 00001112247999999999999999999
Q ss_pred HHHHhccCC--CCCCcEEEEeCCC-cHHHHHHHHHcCCceEEeCCCCHHHHHHHHHHHhhh
Q 026776 103 LKKIKDSSA--LREIPVVIMSSEN-ILARIDRCLEDGAEDFIVKPVKLSDVKRIKDYLTRD 160 (233)
Q Consensus 103 l~~Lr~~~~--~~~~piIvlt~~~-~~~~~~~al~~Ga~dyL~KP~~~~eL~~~~~~l~~~ 160 (233)
+++||+... ...+|||++|++. +.....++++.|+++||.||++ +|...++.+.+.
T Consensus 138 ~~~lr~~~~~~~~~~piI~ls~~~~~~~~~~~~~~~Ga~~~l~KP~~--~L~~~i~~~l~~ 196 (206)
T 3mm4_A 138 TREIRKVEKSYGVRTPIIAVSGHDPGSEEARETIQAGMDAFLDKSLN--QLANVIREIESK 196 (206)
T ss_dssp HHHHHHHHHTTTCCCCEEEEESSCCCHHHHHHHHHHTCSEEEETTCT--THHHHHHHHC--
T ss_pred HHHHHhhhhhcCCCCcEEEEECCCCcHHHHHHHHhCCCCEEEcCcHH--HHHHHHHHHHhh
Confidence 999998521 1389999999987 7788889999999999999998 777776666543
No 43
>3hdv_A Response regulator; PSI-II, structural genomics, Pro structure initiative, NEW YORK SGX research center for STRU genomics, nysgxrc; 2.09A {Pseudomonas putida} SCOP: c.23.1.0
Probab=99.86 E-value=1.2e-20 Score=141.56 Aligned_cols=122 Identities=23% Similarity=0.365 Sum_probs=108.6
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHhhcCCEEEEECCHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCCCCCHHHHHHHHh
Q 026776 28 EEVHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKKIK 107 (233)
Q Consensus 28 ~~~~ILIVddd~~~~~~l~~~L~~~g~~v~~a~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp~~~g~~ll~~Lr 107 (233)
.+.+||||||++..+..++.+|+..||++..+.++.+++..+. ....||+||+|+.||+++|+++++.||
T Consensus 6 ~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~~~----------~~~~~dlvi~D~~l~~~~g~~~~~~l~ 75 (136)
T 3hdv_A 6 ARPLVLVVDDNAVNREALILYLKSRGIDAVGADGAEEARLYLH----------YQKRIGLMITDLRMQPESGLDLIRTIR 75 (136)
T ss_dssp -CCEEEEECSCHHHHHHHHHHHHHTTCCEEEESSHHHHHHHHH----------HCTTEEEEEECSCCSSSCHHHHHHHHH
T ss_pred CCCeEEEECCCHHHHHHHHHHHHHcCceEEEeCCHHHHHHHHH----------hCCCCcEEEEeccCCCCCHHHHHHHHH
Confidence 4689999999999999999999999999999999999999884 223499999999999999999999999
Q ss_pred ccCCCCCCcEEEEeCCCcHHHHHHHHHcCCceEEeCCCCHHHHHHHHHHHhhh
Q 026776 108 DSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVKLSDVKRIKDYLTRD 160 (233)
Q Consensus 108 ~~~~~~~~piIvlt~~~~~~~~~~al~~Ga~dyL~KP~~~~eL~~~~~~l~~~ 160 (233)
+.. ...+|+|++++..+.....++++.|+++||.||++.++|...++.+...
T Consensus 76 ~~~-~~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~ 127 (136)
T 3hdv_A 76 ASE-RAALSIIVVSGDTDVEEAVDVMHLGVVDFLLKPVDLGKLLELVNKELKI 127 (136)
T ss_dssp TST-TTTCEEEEEESSCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHHHC-
T ss_pred hcC-CCCCCEEEEeCCCChHHHHHHHhCCcceEEeCCCCHHHHHHHHHHHhcC
Confidence 873 3489999999999999999999999999999999999998887766543
No 44
>3hzh_A Chemotaxis response regulator (CHEY-3); phosphatase, complex, response regulator, receiver domain, two-component signal transduction; HET: BFD; 1.96A {Borrelia burgdorferi}
Probab=99.86 E-value=5.7e-21 Score=147.41 Aligned_cols=120 Identities=24% Similarity=0.352 Sum_probs=108.7
Q ss_pred CCCCcEEEEEeCCHHHHHHHHHHHhhcCCEEE-EECCHHHHHHHhhhhhhhhccCCCCC--cccEEEEcCCCCCCCHHHH
Q 026776 26 DTEEVHVLAVDDSFVDRKVIERLLTISSCKVT-AVDSGRRALQFLGLDEEQSINGFDGL--KVDLIITDYCMPGMTGYEL 102 (233)
Q Consensus 26 ~~~~~~ILIVddd~~~~~~l~~~L~~~g~~v~-~a~~~~~al~~l~~~~~~~~~~~~~~--~~DlvllD~~mp~~~g~~l 102 (233)
...+++||||||++..+..++.+|+..||.+. .+.++.++++.+. .. .||+||+|+.|++++|+++
T Consensus 33 ~~~~~~Ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~~al~~l~-----------~~~~~~dliilD~~l~~~~g~~~ 101 (157)
T 3hzh_A 33 TGIPFNVLIVDDSVFTVKQLTQIFTSEGFNIIDTAADGEEAVIKYK-----------NHYPNIDIVTLXITMPKMDGITC 101 (157)
T ss_dssp TTEECEEEEECSCHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHH-----------HHGGGCCEEEECSSCSSSCHHHH
T ss_pred CCCceEEEEEeCCHHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHH-----------hcCCCCCEEEEeccCCCccHHHH
Confidence 34568999999999999999999999999988 8999999999984 34 6899999999999999999
Q ss_pred HHHHhccCCCCCCcEEEEeCCCcHHHHHHHHHcCCceEEeCCCCHHHHHHHHHHHh
Q 026776 103 LKKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVKLSDVKRIKDYLT 158 (233)
Q Consensus 103 l~~Lr~~~~~~~~piIvlt~~~~~~~~~~al~~Ga~dyL~KP~~~~eL~~~~~~l~ 158 (233)
++.||+..+ .+|||++++..+.....++++.|+++||.||++.++|...++.+.
T Consensus 102 ~~~lr~~~~--~~~ii~ls~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~l 155 (157)
T 3hzh_A 102 LSNIMEFDK--NARVIMISALGKEQLVKDCLIKGAKTFIVKPLDRAKVLQRVMSVF 155 (157)
T ss_dssp HHHHHHHCT--TCCEEEEESCCCHHHHHHHHHTTCSEEEESSCCHHHHHHHHHHTT
T ss_pred HHHHHhhCC--CCcEEEEeccCcHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHh
Confidence 999998765 899999999999999999999999999999999999987766543
No 45
>3lte_A Response regulator; structural genomics, PSI, protein structure initiative, NYSG YORK structural genomix research consortium, nysgxrc; 2.00A {Bermanella marisrubri}
Probab=99.86 E-value=1.1e-20 Score=140.82 Aligned_cols=121 Identities=19% Similarity=0.355 Sum_probs=103.5
Q ss_pred CCCcEEEEEeCCHHHHHHHHHHHhhcCCEEEEECCHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCCCCCHHHHHHHH
Q 026776 27 TEEVHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKKI 106 (233)
Q Consensus 27 ~~~~~ILIVddd~~~~~~l~~~L~~~g~~v~~a~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp~~~g~~ll~~L 106 (233)
.++.+||||||++..+..+..+|+..||.+..+.++.++++.+ ....||+||+|+.||+++|+++++.|
T Consensus 4 ~~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l-----------~~~~~dlii~d~~l~~~~g~~~~~~l 72 (132)
T 3lte_A 4 KQSKRILVVDDDQAMAAAIERVLKRDHWQVEIAHNGFDAGIKL-----------STFEPAIMTLDLSMPKLDGLDVIRSL 72 (132)
T ss_dssp ---CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHH-----------HHTCCSEEEEESCBTTBCHHHHHHHH
T ss_pred CCCccEEEEECCHHHHHHHHHHHHHCCcEEEEeCCHHHHHHHH-----------HhcCCCEEEEecCCCCCCHHHHHHHH
Confidence 3568999999999999999999999999999999999999988 34579999999999999999999999
Q ss_pred hccCCCCCCcEEEEeCCCcHHHHHHHHHcCCceEEeCCCCHHHHHHHHHHHhh
Q 026776 107 KDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVKLSDVKRIKDYLTR 159 (233)
Q Consensus 107 r~~~~~~~~piIvlt~~~~~~~~~~al~~Ga~dyL~KP~~~~eL~~~~~~l~~ 159 (233)
|+.......+||+++..... ...++++.|+++||.||++.++|...++....
T Consensus 73 ~~~~~~~~~~ii~~~~~~~~-~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~~ 124 (132)
T 3lte_A 73 RQNKVANQPKILVVSGLDKA-KLQQAVTEGADDYLEKPFDNDALLDRIHDLVN 124 (132)
T ss_dssp HTTTCSSCCEEEEECCSCSH-HHHHHHHHTCCEEECSSCCHHHHHHHHHHHHC
T ss_pred HhcCccCCCeEEEEeCCChH-HHHHHHHhChHHHhhCCCCHHHHHHHHHHHcC
Confidence 98764346677777666555 77899999999999999999999877766544
No 46
>1k66_A Phytochrome response regulator RCPB; CHEY homologue, homodimer, APO-protein, (beta/alpha)5, signaling protein; 1.75A {Tolypothrix SP} SCOP: c.23.1.1
Probab=99.86 E-value=2e-20 Score=141.72 Aligned_cols=132 Identities=27% Similarity=0.405 Sum_probs=111.4
Q ss_pred CCCcEEEEEeCCHHHHHHHHHHHhhcCC--EEEEECCHHHHHHHhhhhhhhhccCCCC--CcccEEEEcCCCCCCCHHHH
Q 026776 27 TEEVHVLAVDDSFVDRKVIERLLTISSC--KVTAVDSGRRALQFLGLDEEQSINGFDG--LKVDLIITDYCMPGMTGYEL 102 (233)
Q Consensus 27 ~~~~~ILIVddd~~~~~~l~~~L~~~g~--~v~~a~~~~~al~~l~~~~~~~~~~~~~--~~~DlvllD~~mp~~~g~~l 102 (233)
...++||||||++..+..++.+|+..|+ .+..+.++.++++.+...... +-.. ..||+||+|+.||+++|+++
T Consensus 4 ~~~~~iLivdd~~~~~~~l~~~L~~~g~~~~v~~~~~~~~al~~l~~~~~~---~~~~~~~~~dlvi~D~~l~~~~g~~~ 80 (149)
T 1k66_A 4 NATQPLLVVEDSDEDFSTFQRLLQREGVVNPIYRCITGDQALDFLYQTGSY---CNPDIAPRPAVILLDLNLPGTDGREV 80 (149)
T ss_dssp CTTSCEEEECCCHHHHHHHHHHHHHTTBCSCEEEECSHHHHHHHHHTCCSS---SCGGGCCCCSEEEECSCCSSSCHHHH
T ss_pred CCCccEEEEECCHHHHHHHHHHHHHcCCCceEEEECCHHHHHHHHHhcccc---cCcccCCCCcEEEEECCCCCCCHHHH
Confidence 3568899999999999999999999998 899999999999998421000 0000 57999999999999999999
Q ss_pred HHHHhccCCCCCCcEEEEeCCCcHHHHHHHHHcCCceEEeCCCCHHHHHHHHHHHhhhh
Q 026776 103 LKKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVKLSDVKRIKDYLTRDV 161 (233)
Q Consensus 103 l~~Lr~~~~~~~~piIvlt~~~~~~~~~~al~~Ga~dyL~KP~~~~eL~~~~~~l~~~~ 161 (233)
+++|++......+|+|++++..+......+++.|+++||.||++.++|...++.+.+..
T Consensus 81 ~~~l~~~~~~~~~~ii~~t~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~~~~ 139 (149)
T 1k66_A 81 LQEIKQDEVLKKIPVVIMTTSSNPKDIEICYSYSISSYIVKPLEIDRLTETVQTFIKYW 139 (149)
T ss_dssp HHHHTTSTTGGGSCEEEEESCCCHHHHHHHHHTTCSEEEECCSSHHHHHHHHHHHHHHH
T ss_pred HHHHHhCcccCCCeEEEEeCCCCHHHHHHHHHCCCCEEEeCCCCHHHHHHHHHHHHHHh
Confidence 99999875334899999999999899999999999999999999999988777665543
No 47
>2rjn_A Response regulator receiver:metal-dependent phosphohydrolase, HD subdomain; structural genomics, oceanospirillum SP. MED92; 2.10A {Neptuniibacter caesariensis}
Probab=99.86 E-value=1.7e-20 Score=143.80 Aligned_cols=121 Identities=26% Similarity=0.344 Sum_probs=110.0
Q ss_pred CCCcEEEEEeCCHHHHHHHHHHHhhcCCEEEEECCHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCCCCCHHHHHHHH
Q 026776 27 TEEVHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKKI 106 (233)
Q Consensus 27 ~~~~~ILIVddd~~~~~~l~~~L~~~g~~v~~a~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp~~~g~~ll~~L 106 (233)
.++++||||||++..+..+..+|+..||.+..+.++.++++.+ ....||+||+|+.||+++|+++++.|
T Consensus 5 ~~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l-----------~~~~~dlvi~d~~l~~~~g~~~~~~l 73 (154)
T 2rjn_A 5 YKNYTVMLVDDEQPILNSLKRLIKRLGCNIITFTSPLDALEAL-----------KGTSVQLVISDMRMPEMGGEVFLEQV 73 (154)
T ss_dssp CSCCEEEEECSCHHHHHHHHHHHHTTTCEEEEESCHHHHHHHH-----------TTSCCSEEEEESSCSSSCHHHHHHHH
T ss_pred CCCCeEEEEcCCHHHHHHHHHHHHHcCCeEEEeCCHHHHHHHH-----------hcCCCCEEEEecCCCCCCHHHHHHHH
Confidence 4578999999999999999999999999999999999999998 55679999999999999999999999
Q ss_pred hccCCCCCCcEEEEeCCCcHHHHHHHHHcC-CceEEeCCCCHHHHHHHHHHHhhh
Q 026776 107 KDSSALREIPVVIMSSENILARIDRCLEDG-AEDFIVKPVKLSDVKRIKDYLTRD 160 (233)
Q Consensus 107 r~~~~~~~~piIvlt~~~~~~~~~~al~~G-a~dyL~KP~~~~eL~~~~~~l~~~ 160 (233)
++..+ .+|||++++..+.....++++.| +++||.||++.++|...+..+.+.
T Consensus 74 ~~~~~--~~~ii~ls~~~~~~~~~~~~~~g~~~~~l~kP~~~~~L~~~i~~~~~~ 126 (154)
T 2rjn_A 74 AKSYP--DIERVVISGYADAQATIDAVNRGKISRFLLKPWEDEDVFKVVEKGLQL 126 (154)
T ss_dssp HHHCT--TSEEEEEECGGGHHHHHHHHHTTCCSEEEESSCCHHHHHHHHHHHHHH
T ss_pred HHhCC--CCcEEEEecCCCHHHHHHHHhccchheeeeCCCCHHHHHHHHHHHHHH
Confidence 98755 89999999999888899999998 999999999999998777665543
No 48
>3c3m_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.70A {Methanoculleus marisnigri JR1}
Probab=99.86 E-value=7.5e-21 Score=143.37 Aligned_cols=120 Identities=26% Similarity=0.373 Sum_probs=103.9
Q ss_pred CcEEEEEeCCHHHHHHHHHHHhhcCCEEEEECCHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCCCCCHHHHHHHHhc
Q 026776 29 EVHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKKIKD 108 (233)
Q Consensus 29 ~~~ILIVddd~~~~~~l~~~L~~~g~~v~~a~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp~~~g~~ll~~Lr~ 108 (233)
.++||||||++..+..+..+|+..||.+..+.++.++++.+ ....||+||+|+.||+++|+++++.|++
T Consensus 3 ~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l-----------~~~~~dlvi~D~~l~~~~g~~~~~~l~~ 71 (138)
T 3c3m_A 3 LYTILVVDDSPMIVDVFVTMLERGGYRPITAFSGEECLEAL-----------NATPPDLVLLDIMMEPMDGWETLERIKT 71 (138)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHH-----------HHSCCSEEEEESCCSSSCHHHHHHHHHH
T ss_pred cceEEEEeCCHHHHHHHHHHHHHcCceEEEeCCHHHHHHHH-----------hccCCCEEEEeCCCCCCCHHHHHHHHHc
Confidence 46899999999999999999999999999999999999988 3456999999999999999999999998
Q ss_pred cCCCCCCcEEEEeCCCcHHHHHHHHHcCCceEEeCCCCHHHHHHHHHHHhh
Q 026776 109 SSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVKLSDVKRIKDYLTR 159 (233)
Q Consensus 109 ~~~~~~~piIvlt~~~~~~~~~~al~~Ga~dyL~KP~~~~eL~~~~~~l~~ 159 (233)
......+|||++|+.........++..|+++||.||++.++|...++.+.+
T Consensus 72 ~~~~~~~~ii~ls~~~~~~~~~~~~~~~~~~~l~KP~~~~~L~~~i~~~~~ 122 (138)
T 3c3m_A 72 DPATRDIPVLMLTAKPLTPEEANEYGSYIEDYILKPTTHHQLYEAIEHVLA 122 (138)
T ss_dssp STTTTTSCEEEEESSCCCHHHHHHTTTTCSEEEECCCHHHHHHHHHHHHHS
T ss_pred CcccCCCCEEEEECCCChHHHHHHhhcCHhheEeCCCCHHHHHHHHHHHHH
Confidence 654458999999988765555556677789999999999999877766543
No 49
>3nhm_A Response regulator; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.19A {Myxococcus xanthus}
Probab=99.86 E-value=7.6e-21 Score=141.89 Aligned_cols=121 Identities=26% Similarity=0.354 Sum_probs=103.5
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHhhcCCEEEEECCHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCCCCCHHHHHHHHh
Q 026776 28 EEVHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKKIK 107 (233)
Q Consensus 28 ~~~~ILIVddd~~~~~~l~~~L~~~g~~v~~a~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp~~~g~~ll~~Lr 107 (233)
.+.+||||||++..+..++.+|+ .||.+..+.++.++++.+ ....||+||+|+.||+++|+++++.||
T Consensus 3 ~~~~ilivdd~~~~~~~l~~~l~-~~~~v~~~~~~~~a~~~l-----------~~~~~dlvi~d~~l~~~~g~~~~~~l~ 70 (133)
T 3nhm_A 3 LKPKVLIVENSWTMRETLRLLLS-GEFDCTTAADGASGLQQA-----------LAHPPDVLISDVNMDGMDGYALCGHFR 70 (133)
T ss_dssp --CEEEEECSCHHHHHHHHHHHT-TTSEEEEESSHHHHHHHH-----------HHSCCSEEEECSSCSSSCHHHHHHHHH
T ss_pred CCCEEEEEcCCHHHHHHHHHHHh-CCcEEEEECCHHHHHHHH-----------hcCCCCEEEEeCCCCCCCHHHHHHHHH
Confidence 45899999999999999999998 899999999999999998 345799999999999999999999999
Q ss_pred ccCCCCCCcEEEEeCCCcHHHHHHHHHcCCceEEeCCCCHHHHHHHHHHHhhhh
Q 026776 108 DSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVKLSDVKRIKDYLTRDV 161 (233)
Q Consensus 108 ~~~~~~~~piIvlt~~~~~~~~~~al~~Ga~dyL~KP~~~~eL~~~~~~l~~~~ 161 (233)
+....+.+|||++++..+... ..+++.|+++||.||++.++|...++.+.+..
T Consensus 71 ~~~~~~~~pii~~s~~~~~~~-~~~~~~g~~~~l~KP~~~~~l~~~i~~~l~~~ 123 (133)
T 3nhm_A 71 SEPTLKHIPVIFVSGYAPRTE-GPADQPVPDAYLVKPVKPPVLIAQLHALLARA 123 (133)
T ss_dssp HSTTTTTCCEEEEESCCC------TTSCCCSEEEESSCCHHHHHHHHHHHHHHH
T ss_pred hCCccCCCCEEEEeCCCcHhH-HHHhhcCCceEEeccCCHHHHHHHHHHHHhhh
Confidence 875556899999999887777 78999999999999999999988777666543
No 50
>1dcf_A ETR1 protein; beta-alpha five sandwich, transferase; 2.50A {Arabidopsis thaliana} SCOP: c.23.1.2
Probab=99.86 E-value=2.6e-20 Score=139.75 Aligned_cols=121 Identities=25% Similarity=0.472 Sum_probs=104.1
Q ss_pred CCCcEEEEEeCCHHHHHHHHHHHhhcCCEEEEECCHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCCCCCHHHHHHHH
Q 026776 27 TEEVHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKKI 106 (233)
Q Consensus 27 ~~~~~ILIVddd~~~~~~l~~~L~~~g~~v~~a~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp~~~g~~ll~~L 106 (233)
.+.++||||||++..+..+..+|+..|+.|..+.++.++++.+ .... |+||+|+.||+++|+++++.|
T Consensus 5 ~~~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~~-----------~~~~-dlvllD~~lp~~~g~~~~~~l 72 (136)
T 1dcf_A 5 FTGLKVLVMDENGVSRMVTKGLLVHLGCEVTTVSSNEECLRVV-----------SHEH-KVVFMDVCMPGVENYQIALRI 72 (136)
T ss_dssp CTTCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHC-----------CTTC-SEEEEECCSSTTTTTHHHHHH
T ss_pred cCCCeEEEEeCCHHHHHHHHHHHHHcCCeEEEeCCHHHHHHHH-----------hccC-CEEEEeCCCCCCcHHHHHHHH
Confidence 4568999999999999999999999999999999999999987 3334 999999999999999999999
Q ss_pred hccCCC---CCCcEEEEeCCCcHHHHHHHHHcCCceEEeCCCCHHHHHHHHHHHhh
Q 026776 107 KDSSAL---REIPVVIMSSENILARIDRCLEDGAEDFIVKPVKLSDVKRIKDYLTR 159 (233)
Q Consensus 107 r~~~~~---~~~piIvlt~~~~~~~~~~al~~Ga~dyL~KP~~~~eL~~~~~~l~~ 159 (233)
++.... ...+||++|+..+.....++++.|+++||.||++.++|...++.+.+
T Consensus 73 ~~~~~~~~~~~~~ii~~s~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~l~~~~~ 128 (136)
T 1dcf_A 73 HEKFTKQRHQRPLLVALSGNTDKSTKEKCMSFGLDGVLLKPVSLDNIRDVLSDLLE 128 (136)
T ss_dssp HHHHC-CCSCCCEEEEEESCCSHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHHS
T ss_pred HHhhhhccCCCceEEEEeCCCCHHHHHHHHHcCCCeEEECCCCHHHHHHHHHHHhc
Confidence 853221 13457889999888888999999999999999999999887776654
No 51
>3f6c_A Positive transcription regulator EVGA; structural genomics, PSI-2, protein structure initiative, PO transcription regulator EVGA; 1.45A {Escherichia coli k-12}
Probab=99.86 E-value=3.5e-21 Score=143.90 Aligned_cols=119 Identities=21% Similarity=0.371 Sum_probs=105.7
Q ss_pred CcEEEEEeCCHHHHHHHHHHHhhcCCEEE-EECCHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCCCCCHHHHHHHHh
Q 026776 29 EVHVLAVDDSFVDRKVIERLLTISSCKVT-AVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKKIK 107 (233)
Q Consensus 29 ~~~ILIVddd~~~~~~l~~~L~~~g~~v~-~a~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp~~~g~~ll~~Lr 107 (233)
+++||||||++..+..++.+|+..||.+. .+.++.++++.+ ....||+||+|+.||+++|+++++.||
T Consensus 1 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~~a~~~~-----------~~~~~dlii~d~~l~~~~g~~~~~~l~ 69 (134)
T 3f6c_A 1 SLNAIIIDDHPLAIAAIRNLLIKNDIEILAELTEGGSAVQRV-----------ETLKPDIVIIDVDIPGVNGIQVLETLR 69 (134)
T ss_dssp CEEEEEECCCHHHHHHHHHHHHHTTEEEEEEESSSTTHHHHH-----------HHHCCSEEEEETTCSSSCHHHHHHHHH
T ss_pred CeEEEEEcCCHHHHHHHHHHHhhCCcEEEEEcCCHHHHHHHH-----------HhcCCCEEEEecCCCCCChHHHHHHHH
Confidence 37899999999999999999999999987 899999999988 345799999999999999999999999
Q ss_pred ccCCCCCCcEEEEeCCCcHHHHHHHHHcCCceEEeCCCCHHHHHHHHHHHhhh
Q 026776 108 DSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVKLSDVKRIKDYLTRD 160 (233)
Q Consensus 108 ~~~~~~~~piIvlt~~~~~~~~~~al~~Ga~dyL~KP~~~~eL~~~~~~l~~~ 160 (233)
+..+ .+|+|++|+..+.....++++.|+++||.||++.++|...++.+.+.
T Consensus 70 ~~~~--~~~ii~~s~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~~~ 120 (134)
T 3f6c_A 70 KRQY--SGIIIIVSAKNDHFYGKHCADAGANGFVSKKEGMNNIIAAIEAAKNG 120 (134)
T ss_dssp HTTC--CSEEEEEECC---CTHHHHHHTTCSEEEEGGGCTHHHHHHHHHHHTT
T ss_pred hcCC--CCeEEEEeCCCChHHHHHHHHhCCCEEEeCCCCHHHHHHHHHHHHCC
Confidence 8765 89999999999888889999999999999999999998887776653
No 52
>4dad_A Putative pilus assembly-related protein; response regulator receiver domain, CHEY-related protein, ST genomics; 2.50A {Burkholderia pseudomallei} PDB: 4dn6_A
Probab=99.85 E-value=4.5e-21 Score=145.67 Aligned_cols=126 Identities=10% Similarity=0.144 Sum_probs=111.6
Q ss_pred CCCCCCCcEEEEEeCCHHHHHHHHHHHhhcC-CEEEEECCHHHHHHHhhhhhhhhccCCCC-CcccEEEEcCCCCCCCHH
Q 026776 23 SPSDTEEVHVLAVDDSFVDRKVIERLLTISS-CKVTAVDSGRRALQFLGLDEEQSINGFDG-LKVDLIITDYCMPGMTGY 100 (233)
Q Consensus 23 ~~~~~~~~~ILIVddd~~~~~~l~~~L~~~g-~~v~~a~~~~~al~~l~~~~~~~~~~~~~-~~~DlvllD~~mp~~~g~ 100 (233)
.....++.+||||||++..+..+..+|+..| |.+..+.++.+++..+. .. ..||+||+|+.||+++|+
T Consensus 14 ~~~~~~~~~ilivdd~~~~~~~l~~~L~~~g~~~v~~~~~~~~~~~~~~----------~~~~~~dlvi~D~~l~~~~g~ 83 (146)
T 4dad_A 14 NLYFQGMINILVASEDASRLAHLARLVGDAGRYRVTRTVGRAAQIVQRT----------DGLDAFDILMIDGAALDTAEL 83 (146)
T ss_dssp CCCCGGGCEEEEECSCHHHHHHHHHHHHHHCSCEEEEECCCHHHHTTCH----------HHHTTCSEEEEECTTCCHHHH
T ss_pred CCCcCCCCeEEEEeCCHHHHHHHHHHHhhCCCeEEEEeCCHHHHHHHHH----------hcCCCCCEEEEeCCCCCccHH
Confidence 3445667999999999999999999999998 99999999998887662 22 579999999999999999
Q ss_pred HHHHHHhccCCCCCCcEEEEeCCCcHHHHHHHHHcCCceEEeCCCCHHHHHHHHHHHhhh
Q 026776 101 ELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVKLSDVKRIKDYLTRD 160 (233)
Q Consensus 101 ~ll~~Lr~~~~~~~~piIvlt~~~~~~~~~~al~~Ga~dyL~KP~~~~eL~~~~~~l~~~ 160 (233)
++++.|++..+ .+|||++++..+.+...++++.|+++||.||++.++|...+..+.+.
T Consensus 84 ~~~~~l~~~~~--~~~ii~lt~~~~~~~~~~~~~~ga~~~l~Kp~~~~~L~~~i~~~~~~ 141 (146)
T 4dad_A 84 AAIEKLSRLHP--GLTCLLVTTDASSQTLLDAMRAGVRDVLRWPLEPRALDDALKRAAAQ 141 (146)
T ss_dssp HHHHHHHHHCT--TCEEEEEESCCCHHHHHHHHTTTEEEEEESSCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhCC--CCcEEEEeCCCCHHHHHHHHHhCCceeEcCCCCHHHHHHHHHHHHhh
Confidence 99999998765 89999999999999999999999999999999999998887776543
No 53
>3ilh_A Two component response regulator; NYSGXRC, PSI-II, protein S initiative, structural genomics; 2.59A {Cytophaga hutchinsonii}
Probab=99.85 E-value=2.5e-20 Score=140.88 Aligned_cols=126 Identities=19% Similarity=0.261 Sum_probs=109.7
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHhhcCC--EEEEECCHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCCCCCHHHHHHH
Q 026776 28 EEVHVLAVDDSFVDRKVIERLLTISSC--KVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKK 105 (233)
Q Consensus 28 ~~~~ILIVddd~~~~~~l~~~L~~~g~--~v~~a~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp~~~g~~ll~~ 105 (233)
+.++||||||++..+..+..+|+..|+ .+..+.++.++++.+..... ....||+||+|+.||+++|+++++.
T Consensus 8 ~~~~iLivdd~~~~~~~l~~~l~~~~~~~~v~~~~~~~~a~~~l~~~~~------~~~~~dlvi~D~~l~~~~g~~~~~~ 81 (146)
T 3ilh_A 8 KIDSVLLIDDDDIVNFLNTTIIRMTHRVEEIQSVTSGNAAINKLNELYA------AGRWPSIICIDINMPGINGWELIDL 81 (146)
T ss_dssp CEEEEEEECSCHHHHHHHHHHHHTTCCEEEEEEESSHHHHHHHHHHHHT------SSCCCSEEEEESSCSSSCHHHHHHH
T ss_pred ccceEEEEeCCHHHHHHHHHHHHhcCCCeeeeecCCHHHHHHHHHHhhc------cCCCCCEEEEcCCCCCCCHHHHHHH
Confidence 568999999999999999999999998 89999999999998842110 1267999999999999999999999
Q ss_pred HhccC--CCCCCcEEEEeCCCcHHHHHHHHHcC-CceEEeCCCCHHHHHHHHHHHhh
Q 026776 106 IKDSS--ALREIPVVIMSSENILARIDRCLEDG-AEDFIVKPVKLSDVKRIKDYLTR 159 (233)
Q Consensus 106 Lr~~~--~~~~~piIvlt~~~~~~~~~~al~~G-a~dyL~KP~~~~eL~~~~~~l~~ 159 (233)
||+.. ....+|+|++++..+.....+++..| +++||.||++.++|...++....
T Consensus 82 l~~~~~~~~~~~~ii~~t~~~~~~~~~~~~~~g~~~~~l~KP~~~~~L~~~i~~~~~ 138 (146)
T 3ilh_A 82 FKQHFQPMKNKSIVCLLSSSLDPRDQAKAEASDWVDYYVSKPLTANALNNLYNKVLN 138 (146)
T ss_dssp HHHHCGGGTTTCEEEEECSSCCHHHHHHHHHCSSCCEEECSSCCHHHHHHHHHHHHC
T ss_pred HHHhhhhccCCCeEEEEeCCCChHHHHHHHhcCCcceeeeCCCCHHHHHHHHHHHHH
Confidence 99832 23489999999999999999999999 99999999999999888776654
No 54
>2jba_A Phosphate regulon transcriptional regulatory PROT; transcription factor, sensory transduction, phosphate regula transcription regulation; 1.45A {Escherichia coli} PDB: 2jba_B 1b00_A 2iyn_A 2jb9_A 1zes_A
Probab=99.85 E-value=5.3e-21 Score=141.44 Aligned_cols=119 Identities=25% Similarity=0.377 Sum_probs=107.5
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhcCCEEEEECCHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCCCCCHHHHHHHHhcc
Q 026776 30 VHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKKIKDS 109 (233)
Q Consensus 30 ~~ILIVddd~~~~~~l~~~L~~~g~~v~~a~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp~~~g~~ll~~Lr~~ 109 (233)
.+||||||++..+..+..+|+..||.+..+.++.++++.+ ....||+||+|+.||+++|++++++||+.
T Consensus 3 ~~ilivdd~~~~~~~l~~~l~~~g~~v~~~~~~~~a~~~~-----------~~~~~dlvi~D~~l~~~~g~~~~~~l~~~ 71 (127)
T 2jba_A 3 RRILVVEDEAPIREMVCFVLEQNGFQPVEAEDYDSAVNQL-----------NEPWPDLILLAWMLPGGSGIQFIKHLRRE 71 (127)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEECSHHHHHTTC-----------SSSCCSEEEEESEETTEEHHHHHHHHHTS
T ss_pred cEEEEEcCCHHHHHHHHHHHHHCCceEEEeCCHHHHHHHH-----------hccCCCEEEEecCCCCCCHHHHHHHHHhC
Confidence 5899999999999999999999999999999999999887 55679999999999999999999999986
Q ss_pred CCCCCCcEEEEeCCCcHHHHHHHHHcCCceEEeCCCCHHHHHHHHHHHhh
Q 026776 110 SALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVKLSDVKRIKDYLTR 159 (233)
Q Consensus 110 ~~~~~~piIvlt~~~~~~~~~~al~~Ga~dyL~KP~~~~eL~~~~~~l~~ 159 (233)
...+.+|+|++++..+.....++++.|+++|+.||++.++|...++.+.+
T Consensus 72 ~~~~~~~ii~~s~~~~~~~~~~~~~~ga~~~l~Kp~~~~~l~~~i~~~~~ 121 (127)
T 2jba_A 72 SMTRDIPVVMLTARGEEEDRVRGLETGADDCITKPFSPKELVARIKAVMR 121 (127)
T ss_dssp TTTTTSCEEEEEETTHHHHHHTTCCCSCSEEEEESCCHHHHHHHHHHHHH
T ss_pred cccCCCCEEEEeCCCCHHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHh
Confidence 53358999999999888888899999999999999999999877766554
No 55
>2a9o_A Response regulator; essential protein, YYCF/YYCG homolog, signaling protein; 1.65A {Streptococcus pneumoniae} SCOP: c.23.1.1 PDB: 1nxo_A 1nxs_A 1nxv_A 1nxw_A 1nxx_A 1nxp_A 2a9p_A 2a9q_A 1nxt_A* 2a9r_A*
Probab=99.85 E-value=2.9e-20 Score=135.92 Aligned_cols=116 Identities=27% Similarity=0.405 Sum_probs=104.7
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhcCCEEEEECCHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCCCCCHHHHHHHHhcc
Q 026776 30 VHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKKIKDS 109 (233)
Q Consensus 30 ~~ILIVddd~~~~~~l~~~L~~~g~~v~~a~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp~~~g~~ll~~Lr~~ 109 (233)
.+||||||++..+..+...|...||.+..+.++.++++.+. ...||+||+|+.||+++|+++++.|++.
T Consensus 2 ~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~~~-----------~~~~dlvl~D~~l~~~~g~~~~~~l~~~ 70 (120)
T 2a9o_A 2 KKILIVDDEKPISDIIKFNMTKEGYEVVTAFNGREALEQFE-----------AEQPDIIILDLMLPEIDGLEVAKTIRKT 70 (120)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHH-----------HHCCSEEEECSSCSSSCHHHHHHHHHHH
T ss_pred ceEEEEcCCHHHHHHHHHHHHhcCcEEEEecCHHHHHHHHH-----------hCCCCEEEEeccCCCCCHHHHHHHHHhC
Confidence 47999999999999999999999999999999999999883 3469999999999999999999999974
Q ss_pred CCCCCCcEEEEeCCCcHHHHHHHHHcCCceEEeCCCCHHHHHHHHHHHhh
Q 026776 110 SALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVKLSDVKRIKDYLTR 159 (233)
Q Consensus 110 ~~~~~~piIvlt~~~~~~~~~~al~~Ga~dyL~KP~~~~eL~~~~~~l~~ 159 (233)
+ .+|+|++++..+......+++.|+++|+.||++.++|...++.+.+
T Consensus 71 -~--~~~ii~~s~~~~~~~~~~~~~~g~~~~l~Kp~~~~~l~~~i~~~~~ 117 (120)
T 2a9o_A 71 -S--SVPILMLSAKDSEFDKVIGLELGADDYVTKPFSNRELQARVKALLR 117 (120)
T ss_dssp -C--CCCEEEEESCCSHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHH
T ss_pred -C--CCCEEEEecCCchHHHHHHHhCCHhheEeCCCCHHHHHHHHHHHHc
Confidence 3 7899999999988888899999999999999999999877766543
No 56
>1mvo_A PHOP response regulator; phosphate regulon, transcriptional regulatory protein, alpha/beta doubly wound fold, phosphorylation; 1.60A {Bacillus subtilis} SCOP: c.23.1.1
Probab=99.85 E-value=1.5e-20 Score=140.78 Aligned_cols=118 Identities=25% Similarity=0.350 Sum_probs=106.4
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhcCCEEEEECCHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCCCCCHHHHHHHHhcc
Q 026776 30 VHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKKIKDS 109 (233)
Q Consensus 30 ~~ILIVddd~~~~~~l~~~L~~~g~~v~~a~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp~~~g~~ll~~Lr~~ 109 (233)
.+||||||++..+..+...|...||.+..+.++.++++.+. ...||+||+|+.||+++|+++++.|++.
T Consensus 4 ~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~~~-----------~~~~dlvl~D~~l~~~~g~~~~~~l~~~ 72 (136)
T 1mvo_A 4 KKILVVDDEESIVTLLQYNLERSGYDVITASDGEEALKKAE-----------TEKPDLIVLDVMLPKLDGIEVCKQLRQQ 72 (136)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHH-----------HHCCSEEEEESSCSSSCHHHHHHHHHHT
T ss_pred CEEEEEECCHHHHHHHHHHHHHCCcEEEEecCHHHHHHHHh-----------hcCCCEEEEecCCCCCCHHHHHHHHHcC
Confidence 68999999999999999999999999999999999999883 4469999999999999999999999987
Q ss_pred CCCCCCcEEEEeCCCcHHHHHHHHHcCCceEEeCCCCHHHHHHHHHHHhhh
Q 026776 110 SALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVKLSDVKRIKDYLTRD 160 (233)
Q Consensus 110 ~~~~~~piIvlt~~~~~~~~~~al~~Ga~dyL~KP~~~~eL~~~~~~l~~~ 160 (233)
.+ .+|+|++++..+......+++.|+++||.||++.++|...++.+.+.
T Consensus 73 ~~--~~~ii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~ 121 (136)
T 1mvo_A 73 KL--MFPILMLTAKDEEFDKVLGLELGADDYMTKPFSPREVNARVKAILRR 121 (136)
T ss_dssp TC--CCCEEEEECTTCCCCHHHHHHTTCCEEEESSCCHHHHHHHHHHHHHT
T ss_pred CC--CCCEEEEECCCCHHHHHHHHhCCCCEEEECCCCHHHHHHHHHHHHHh
Confidence 54 78999999988877788899999999999999999998777766543
No 57
>2ayx_A Sensor kinase protein RCSC; two independent structural domains, transferase; NMR {Escherichia coli} SCOP: c.23.1.1 c.23.1.6 PDB: 2ayz_A 2ayy_A
Probab=99.85 E-value=6.5e-21 Score=159.14 Aligned_cols=122 Identities=26% Similarity=0.535 Sum_probs=110.9
Q ss_pred CCCCcEEEEEeCCHHHHHHHHHHHhhcCCEEEEECCHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCCCCCHHHHHHH
Q 026776 26 DTEEVHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKK 105 (233)
Q Consensus 26 ~~~~~~ILIVddd~~~~~~l~~~L~~~g~~v~~a~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp~~~g~~ll~~ 105 (233)
....++||||||++.++..+..+|+..||+|..+.++.++++.+ ....||+||+|+.||+++|++++++
T Consensus 126 ~~~~~~ILivdd~~~~~~~l~~~L~~~g~~v~~a~~~~eal~~l-----------~~~~~dlvl~D~~mp~~~G~~l~~~ 194 (254)
T 2ayx_A 126 DNDDMMILVVDDHPINRRLLADQLGSLGYQCKTANDGVDALNVL-----------SKNHIDIVLSDVNMPNMDGYRLTQR 194 (254)
T ss_dssp CCCCCEEEEEESSHHHHHHHHHHHHHHTSEEEEECCSHHHHHHH-----------HHSCCSEEEEEESSCSSCCHHHHHH
T ss_pred CCCCCEEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHH-----------HhCCCCEEEEcCCCCCCCHHHHHHH
Confidence 34568999999999999999999999999999999999999998 3456999999999999999999999
Q ss_pred HhccCCCCCCcEEEEeCCCcHHHHHHHHHcCCceEEeCCCCHHHHHHHHHHHhhh
Q 026776 106 IKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVKLSDVKRIKDYLTRD 160 (233)
Q Consensus 106 Lr~~~~~~~~piIvlt~~~~~~~~~~al~~Ga~dyL~KP~~~~eL~~~~~~l~~~ 160 (233)
||+..+ .+|||++|++.+.+...++++.|+++||.||++.++|...+..+.+.
T Consensus 195 ir~~~~--~~piI~lt~~~~~~~~~~~~~~G~~~~l~KP~~~~~L~~~l~~~~~~ 247 (254)
T 2ayx_A 195 IRQLGL--TLPVIGVTANALAEEKQRCLESGMDSCLSKPVTLDVIKQTLTLYAER 247 (254)
T ss_dssp HHHHHC--CSCEEEEESSTTSHHHHHHHHCCCEEEEESSCCHHHHHHHHHHHHHH
T ss_pred HHhcCC--CCcEEEEECCCCHHHHHHHHHcCCceEEECCCCHHHHHHHHHHHHHH
Confidence 998765 89999999998888899999999999999999999998877766544
No 58
>3n0r_A Response regulator; sigma factor, receiver, two-component SI transduction, signaling protein; HET: MSE GOL; 1.25A {Caulobacter vibrioides} PDB: 3t0y_A
Probab=99.85 E-value=1.2e-21 Score=166.73 Aligned_cols=116 Identities=22% Similarity=0.229 Sum_probs=104.6
Q ss_pred CcEEEEEeCCHHHHHHHHHHHhhcCCEEE-EECCHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCC-CCCHHHHHHHH
Q 026776 29 EVHVLAVDDSFVDRKVIERLLTISSCKVT-AVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMP-GMTGYELLKKI 106 (233)
Q Consensus 29 ~~~ILIVddd~~~~~~l~~~L~~~g~~v~-~a~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp-~~~g~~ll~~L 106 (233)
..+||+|||++.++..+..+|+..||.|. .+.+|.+|++.+ ....||+||+|+.|| +|||+++++.|
T Consensus 160 ~~rILvVdD~~~~~~~l~~~L~~~g~~v~~~a~~g~eAl~~~-----------~~~~~dlvl~D~~MPd~mdG~e~~~~i 228 (286)
T 3n0r_A 160 ATEVLIIEDEPVIAADIEALVRELGHDVTDIAATRGEALEAV-----------TRRTPGLVLADIQLADGSSGIDAVKDI 228 (286)
T ss_dssp CCEEEEECCSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHH-----------HHCCCSEEEEESCCTTSCCTTTTTHHH
T ss_pred CCcEEEEcCCHHHHHHHHHHhhccCceEEEEeCCHHHHHHHH-----------HhCCCCEEEEcCCCCCCCCHHHHHHHH
Confidence 45899999999999999999999999999 999999999998 345799999999999 89999999999
Q ss_pred hccCCCCCCcEEEEeCCCcHHHHHHHHHcCCceEEeCCCCHHHHHHHHHHHhhh
Q 026776 107 KDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVKLSDVKRIKDYLTRD 160 (233)
Q Consensus 107 r~~~~~~~~piIvlt~~~~~~~~~~al~~Ga~dyL~KP~~~~eL~~~~~~l~~~ 160 (233)
|+.. .+|||++|++.+ ...+++++|+++||.||++.++|...+..+.+.
T Consensus 229 r~~~---~~piI~lT~~~~--~~~~~~~~G~~~~l~KP~~~~~L~~~i~~~l~~ 277 (286)
T 3n0r_A 229 LGRM---DVPVIFITAFPE--RLLTGERPEPTFLITKPFQPETVKAAIGQALFF 277 (286)
T ss_dssp HHHT---TCCEEEEESCGG--GGCCSSSCCCSSEEESSCCHHHHHHHHHHHHHH
T ss_pred HhcC---CCCEEEEeCCHH--HHHHHHhCCCcEEEeCCCCHHHHHHHHHHHHHh
Confidence 9875 899999999863 466789999999999999999998877776654
No 59
>3h5i_A Response regulator/sensory box protein/ggdef domain protein; structural genomics, transcription, PSI-2; 1.90A {Carboxydothermus hydrogenoformans z-2901}
Probab=99.85 E-value=6.5e-21 Score=144.07 Aligned_cols=121 Identities=22% Similarity=0.294 Sum_probs=106.7
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHhhcCCEEEEECCHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCCC-CCHHHHHHHH
Q 026776 28 EEVHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPG-MTGYELLKKI 106 (233)
Q Consensus 28 ~~~~ILIVddd~~~~~~l~~~L~~~g~~v~~a~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp~-~~g~~ll~~L 106 (233)
++++||||||++..+..+..+|+..||.+..+.++.++++.+. ....||+||+|+.||+ ++|+++++.|
T Consensus 4 ~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l~----------~~~~~dlvi~D~~l~~~~~g~~~~~~l 73 (140)
T 3h5i_A 4 KDKKILIVEDSKFQAKTIANILNKYGYTVEIALTGEAAVEKVS----------GGWYPDLILMDIELGEGMDGVQTALAI 73 (140)
T ss_dssp --CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHH----------TTCCCSEEEEESSCSSSCCHHHHHHHH
T ss_pred CCcEEEEEeCCHHHHHHHHHHHHHcCCEEEEecChHHHHHHHh----------cCCCCCEEEEeccCCCCCCHHHHHHHH
Confidence 4689999999999999999999999999999999999999883 2267999999999995 9999999999
Q ss_pred hccCCCCCCcEEEEeCCCcHHHHHHHHHcCCceEEeCCCCHHHHHHHHHHHhhhh
Q 026776 107 KDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVKLSDVKRIKDYLTRDV 161 (233)
Q Consensus 107 r~~~~~~~~piIvlt~~~~~~~~~~al~~Ga~dyL~KP~~~~eL~~~~~~l~~~~ 161 (233)
++. + .+|+|++++..+.....++++.|+++||.||++.++|...+..+.+..
T Consensus 74 ~~~-~--~~~ii~ls~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~l~~~ 125 (140)
T 3h5i_A 74 QQI-S--ELPVVFLTAHTEPAVVEKIRSVTAYGYVMKSATEQVLITIVEMALRLY 125 (140)
T ss_dssp HHH-C--CCCEEEEESSSSCCCCGGGGGSCEEEEEETTCCHHHHHHHHHHHHHHH
T ss_pred HhC-C--CCCEEEEECCCCHHHHHHHHhCCCcEEEeCCCCHHHHHHHHHHHHHHH
Confidence 985 3 899999999988777888999999999999999999988777665543
No 60
>1yio_A Response regulatory protein; transcription regulation, DNA binding protein; 2.20A {Pseudomonas fluorescens} SCOP: a.4.6.2 c.23.1.1 PDB: 1zn2_A
Probab=99.85 E-value=1.5e-20 Score=151.31 Aligned_cols=119 Identities=24% Similarity=0.360 Sum_probs=107.9
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHhhcCCEEEEECCHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCCCCCHHHHHHHHh
Q 026776 28 EEVHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKKIK 107 (233)
Q Consensus 28 ~~~~ILIVddd~~~~~~l~~~L~~~g~~v~~a~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp~~~g~~ll~~Lr 107 (233)
.+.+||||||++..+..+..+|+..||.|..+.++.++++.+ ....||+||+|+.||+++|+++++.|+
T Consensus 3 ~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~-----------~~~~~dlvl~D~~lp~~~g~~~~~~l~ 71 (208)
T 1yio_A 3 AKPTVFVVDDDMSVREGLRNLLRSAGFEVETFDCASTFLEHR-----------RPEQHGCLVLDMRMPGMSGIELQEQLT 71 (208)
T ss_dssp CCCEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHC-----------CTTSCEEEEEESCCSSSCHHHHHHHHH
T ss_pred CCCEEEEEcCCHHHHHHHHHHHHhCCceEEEcCCHHHHHHhh-----------hccCCCEEEEeCCCCCCCHHHHHHHHH
Confidence 457899999999999999999999999999999999999988 556799999999999999999999999
Q ss_pred ccCCCCCCcEEEEeCCCcHHHHHHHHHcCCceEEeCCCCHHHHHHHHHHHhh
Q 026776 108 DSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVKLSDVKRIKDYLTR 159 (233)
Q Consensus 108 ~~~~~~~~piIvlt~~~~~~~~~~al~~Ga~dyL~KP~~~~eL~~~~~~l~~ 159 (233)
+..+ .+|||++|++.+.....++++.|+++|+.||++.++|...+..+.+
T Consensus 72 ~~~~--~~~ii~ls~~~~~~~~~~a~~~Ga~~~l~Kp~~~~~L~~~i~~~~~ 121 (208)
T 1yio_A 72 AISD--GIPIVFITAHGDIPMTVRAMKAGAIEFLPKPFEEQALLDAIEQGLQ 121 (208)
T ss_dssp HTTC--CCCEEEEESCTTSCCCHHHHHTTEEEEEESSCCHHHHHHHHHHHHH
T ss_pred hcCC--CCCEEEEeCCCCHHHHHHHHHCCCcEEEeCCCCHHHHHHHHHHHHh
Confidence 8755 8999999999888888899999999999999999999776665543
No 61
>1dz3_A Stage 0 sporulation protein A; response regulator, domain swapping; 1.65A {Bacillus stearothermophilus} SCOP: c.23.1.1 PDB: 1qmp_A*
Probab=99.85 E-value=1.8e-20 Score=139.61 Aligned_cols=118 Identities=19% Similarity=0.334 Sum_probs=104.3
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhc-CCEEE-EECCHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCCCCCHHHHHHHHh
Q 026776 30 VHVLAVDDSFVDRKVIERLLTIS-SCKVT-AVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKKIK 107 (233)
Q Consensus 30 ~~ILIVddd~~~~~~l~~~L~~~-g~~v~-~a~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp~~~g~~ll~~Lr 107 (233)
++||||||++..+..++.+|... |+.+. .+.++.++++.+. ...||+||+|+.||+++|++++++|+
T Consensus 3 ~~ilivdd~~~~~~~l~~~l~~~~~~~~~~~~~~~~~a~~~~~-----------~~~~dlvllD~~l~~~~g~~~~~~l~ 71 (130)
T 1dz3_A 3 IKVCIADDNRELVSLLDEYISSQPDMEVIGTAYNGQDCLQMLE-----------EKRPDILLLDIIMPHLDGLAVLERIR 71 (130)
T ss_dssp EEEEEECSCHHHHHHHHHHHHTSTTEEEEEEESSHHHHHHHHH-----------HHCCSEEEEESCCSSSCHHHHHHHHH
T ss_pred eEEEEEcCCHHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHHh-----------cCCCCEEEEecCCCCCCHHHHHHHHH
Confidence 68999999999999999999987 88765 7999999999883 34699999999999999999999999
Q ss_pred ccCCCCCCcEEEEeCCCcHHHHHHHHHcCCceEEeCCCCHHHHHHHHHHHhh
Q 026776 108 DSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVKLSDVKRIKDYLTR 159 (233)
Q Consensus 108 ~~~~~~~~piIvlt~~~~~~~~~~al~~Ga~dyL~KP~~~~eL~~~~~~l~~ 159 (233)
+.. ....|+|++|+..+.....++++.|+++||.||++.++|...++.+.+
T Consensus 72 ~~~-~~~~~ii~ls~~~~~~~~~~~~~~ga~~~l~KP~~~~~l~~~i~~~~~ 122 (130)
T 1dz3_A 72 AGF-EHQPNVIMLTAFGQEDVTKKAVELGASYFILKPFDMENLAHHIRQVYG 122 (130)
T ss_dssp HHC-SSCCEEEEEEETTCHHHHHHHHHTTCEEEEECSSCCTTHHHHHHHHHH
T ss_pred hcC-CCCCcEEEEecCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHhc
Confidence 742 237899999999988899999999999999999999999877776654
No 62
>2qxy_A Response regulator; regulation of transcription, NYSGXRC, protein structure initiative II (PSI II), structural genomics; 1.95A {Thermotoga maritima}
Probab=99.85 E-value=4e-20 Score=139.61 Aligned_cols=119 Identities=22% Similarity=0.327 Sum_probs=109.0
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHhhcCCEEEEECCHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCCCCCHHHHHHHHh
Q 026776 28 EEVHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKKIK 107 (233)
Q Consensus 28 ~~~~ILIVddd~~~~~~l~~~L~~~g~~v~~a~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp~~~g~~ll~~Lr 107 (233)
..++||||||++..+..+...|+..||++..+.++.++++.+ ....||+||+|+ |++++|+++++.|+
T Consensus 3 ~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l-----------~~~~~dlvi~d~-~~~~~g~~~~~~l~ 70 (142)
T 2qxy_A 3 LTPTVMVVDESRITFLAVKNALEKDGFNVIWAKNEQEAFTFL-----------RREKIDLVFVDV-FEGEESLNLIRRIR 70 (142)
T ss_dssp CCCEEEEECSCHHHHHHHHHHHGGGTCEEEEESSHHHHHHHH-----------TTSCCSEEEEEC-TTTHHHHHHHHHHH
T ss_pred CCCeEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHH-----------hccCCCEEEEeC-CCCCcHHHHHHHHH
Confidence 357899999999999999999999999999999999999998 556899999999 99999999999999
Q ss_pred ccCCCCCCcEEEEeCCCcHHHHHHHHHcCCceEEeCCCCHHHHHHHHHHHhhh
Q 026776 108 DSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVKLSDVKRIKDYLTRD 160 (233)
Q Consensus 108 ~~~~~~~~piIvlt~~~~~~~~~~al~~Ga~dyL~KP~~~~eL~~~~~~l~~~ 160 (233)
+..+ .+|+|++++..+.....++++.|+++||.||++.++|...+..+.+.
T Consensus 71 ~~~~--~~pii~ls~~~~~~~~~~~~~~g~~~~l~kP~~~~~l~~~i~~~~~~ 121 (142)
T 2qxy_A 71 EEFP--DTKVAVLSAYVDKDLIINSVKAGAVDYILKPFRLDYLLERVKKIISS 121 (142)
T ss_dssp HHCT--TCEEEEEESCCCHHHHHHHHHHTCSCEEESSCCHHHHHHHHHHHHHC
T ss_pred HHCC--CCCEEEEECCCCHHHHHHHHHCCcceeEeCCCCHHHHHHHHHHHHhh
Confidence 8755 89999999999988899999999999999999999998877766543
No 63
>3eul_A Possible nitrate/nitrite response transcriptional regulatory protein NARL (DNA-binding...; central beta strand flanked by alpha helices; 1.90A {Mycobacterium tuberculosis}
Probab=99.85 E-value=4.6e-20 Score=141.11 Aligned_cols=122 Identities=25% Similarity=0.382 Sum_probs=108.2
Q ss_pred CCCCcEEEEEeCCHHHHHHHHHHHhhcCCE--EEEECCHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCCCCCHHHHH
Q 026776 26 DTEEVHVLAVDDSFVDRKVIERLLTISSCK--VTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELL 103 (233)
Q Consensus 26 ~~~~~~ILIVddd~~~~~~l~~~L~~~g~~--v~~a~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp~~~g~~ll 103 (233)
..++.+||||||++..+..+..+|...|+. +..+.++.++++.+. ...||+||+|+.||+++|++++
T Consensus 12 ~~~~~~iLivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~a~~~l~-----------~~~~dlii~d~~l~~~~g~~~~ 80 (152)
T 3eul_A 12 QPEKVRVVVGDDHPLFREGVVRALSLSGSVNVVGEADDGAAALELIK-----------AHLPDVALLDYRMPGMDGAQVA 80 (152)
T ss_dssp --CCEEEEEECSSHHHHHHHHHHHHHHSSEEEEEEESSHHHHHHHHH-----------HHCCSEEEEETTCSSSCHHHHH
T ss_pred CCceEEEEEEcCCHHHHHHHHHHHhhCCCeEEEEEeCCHHHHHHHHH-----------hcCCCEEEEeCCCCCCCHHHHH
Confidence 456799999999999999999999998853 557999999999983 4579999999999999999999
Q ss_pred HHHhccCCCCCCcEEEEeCCCcHHHHHHHHHcCCceEEeCCCCHHHHHHHHHHHhhh
Q 026776 104 KKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVKLSDVKRIKDYLTRD 160 (233)
Q Consensus 104 ~~Lr~~~~~~~~piIvlt~~~~~~~~~~al~~Ga~dyL~KP~~~~eL~~~~~~l~~~ 160 (233)
+.|++..+ .+|||++++..+.....++++.|+++||.||++.++|...+..+.+.
T Consensus 81 ~~l~~~~~--~~~ii~~s~~~~~~~~~~~~~~g~~~~l~Kp~~~~~l~~~i~~~~~~ 135 (152)
T 3eul_A 81 AAVRSYEL--PTRVLLISAHDEPAIVYQALQQGAAGFLLKDSTRTEIVKAVLDCAKG 135 (152)
T ss_dssp HHHHHTTC--SCEEEEEESCCCHHHHHHHHHTTCSEEEETTCCHHHHHHHHHHHHHC
T ss_pred HHHHhcCC--CCeEEEEEccCCHHHHHHHHHcCCCEEEecCCCHHHHHHHHHHHHcC
Confidence 99998765 89999999999999999999999999999999999998877766543
No 64
>2qr3_A Two-component system response regulator; structural genomics, signal receiver, PSI-2, protein structu initiative; 1.80A {Bacteroides fragilis}
Probab=99.84 E-value=3.9e-20 Score=139.01 Aligned_cols=119 Identities=22% Similarity=0.255 Sum_probs=107.7
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHhhcCCEEEEECCHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCC-----CCCHHHH
Q 026776 28 EEVHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMP-----GMTGYEL 102 (233)
Q Consensus 28 ~~~~ILIVddd~~~~~~l~~~L~~~g~~v~~a~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp-----~~~g~~l 102 (233)
+.++||||||++..+..+...|+..||.+..+.++.++++.+ ....||+||+|+.|+ +++|+++
T Consensus 2 ~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l-----------~~~~~dlvi~d~~~~~~~~~~~~g~~~ 70 (140)
T 2qr3_A 2 SLGTIIIVDDNKGVLTAVQLLLKNHFSKVITLSSPVSLSTVL-----------REENPEVVLLDMNFTSGINNGNEGLFW 70 (140)
T ss_dssp CCCEEEEECSCHHHHHHHHHHHTTTSSEEEEECCHHHHHHHH-----------HHSCEEEEEEETTTTC-----CCHHHH
T ss_pred CCceEEEEeCCHHHHHHHHHHHHhCCcEEEEeCCHHHHHHHH-----------HcCCCCEEEEeCCcCCCCCCCccHHHH
Confidence 358999999999999999999999999999999999999998 345699999999999 9999999
Q ss_pred HHHHhccCCCCCCcEEEEeCCCcHHHHHHHHHcCCceEEeCCCCHHHHHHHHHHHhh
Q 026776 103 LKKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVKLSDVKRIKDYLTR 159 (233)
Q Consensus 103 l~~Lr~~~~~~~~piIvlt~~~~~~~~~~al~~Ga~dyL~KP~~~~eL~~~~~~l~~ 159 (233)
++.|++..+ .+|+|++++..+.....++++.|+++||.||++.++|...+..+.+
T Consensus 71 ~~~l~~~~~--~~~ii~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~l~~~~~ 125 (140)
T 2qr3_A 71 LHEIKRQYR--DLPVVLFTAYADIDLAVRGIKEGASDFVVKPWDNQKLLETLLNAAS 125 (140)
T ss_dssp HHHHHHHCT--TCCEEEEEEGGGHHHHHHHHHTTCCEEEEESCCHHHHHHHHHHHHT
T ss_pred HHHHHhhCc--CCCEEEEECCCCHHHHHHHHHcCchheeeCCCCHHHHHHHHHHHHH
Confidence 999998754 8999999999988899999999999999999999999887776654
No 65
>3n53_A Response regulator receiver modulated diguanylate; diguanylate cyclase, protein structure I II(PSI II), NYSGXRC, structural genomics; 2.20A {Pelobacter carbinolicus} SCOP: c.23.1.0
Probab=99.84 E-value=6.2e-21 Score=143.91 Aligned_cols=121 Identities=24% Similarity=0.349 Sum_probs=99.0
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHhhcCCEEEEECCHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCCCCCHHHHHHHHh
Q 026776 28 EEVHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKKIK 107 (233)
Q Consensus 28 ~~~~ILIVddd~~~~~~l~~~L~~~g~~v~~a~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp~~~g~~ll~~Lr 107 (233)
.+.+||||||++..+..+..+|+.. +.+..+.++.++++.+ ....||+||+|+.||+++|+++++.||
T Consensus 2 ~~~~iLivdd~~~~~~~l~~~l~~~-~~v~~~~~~~~a~~~~-----------~~~~~dlvi~D~~l~~~~g~~~~~~l~ 69 (140)
T 3n53_A 2 SLKKILIIDQQDFSRIELKNFLDSE-YLVIESKNEKEALEQI-----------DHHHPDLVILDMDIIGENSPNLCLKLK 69 (140)
T ss_dssp -CCEEEEECSCHHHHHHHHHHHTTT-SEEEEESSHHHHHHHH-----------HHHCCSEEEEETTC------CHHHHHH
T ss_pred CCCEEEEEeCCHHHHHHHHHHHHhc-ceEEEeCCHHHHHHHH-----------hcCCCCEEEEeCCCCCCcHHHHHHHHH
Confidence 3578999999999999999999888 9999999999999998 345799999999999999999999999
Q ss_pred ccCCCCCCcEEEEeCCCcHHHHHHHHHcCCceEEeCCCCHHHHHHHHHHHhhh
Q 026776 108 DSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVKLSDVKRIKDYLTRD 160 (233)
Q Consensus 108 ~~~~~~~~piIvlt~~~~~~~~~~al~~Ga~dyL~KP~~~~eL~~~~~~l~~~ 160 (233)
+....+.+|+|++++..+.+...++++.|+++||.||++.++|...++.+.+.
T Consensus 70 ~~~~~~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~ 122 (140)
T 3n53_A 70 RSKGLKNVPLILLFSSEHKEAIVNGLHSGADDYLTKPFNRNDLLSRIEIHLRT 122 (140)
T ss_dssp TSTTCTTCCEEEEECC----CTTTTTTCCCSEEEESSCCHHHHHHHHHHHHHH
T ss_pred cCcccCCCCEEEEecCCCHHHHHHHHhcCCCeeeeCCCCHHHHHHHHHHHHhh
Confidence 87644589999999998888888999999999999999999998777766543
No 66
>3q9s_A DNA-binding response regulator; DNA binding protein; 2.40A {Deinococcus radiodurans}
Probab=99.84 E-value=1.7e-20 Score=156.14 Aligned_cols=120 Identities=21% Similarity=0.367 Sum_probs=108.3
Q ss_pred CCCcEEEEEeCCHHHHHHHHHHHhhcCCEEEEECCHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCCCCCHHHHHHHH
Q 026776 27 TEEVHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKKI 106 (233)
Q Consensus 27 ~~~~~ILIVddd~~~~~~l~~~L~~~g~~v~~a~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp~~~g~~ll~~L 106 (233)
+..++||||||++..+..+..+|+..||.|..+.++.++++.+ ....||+||+|+.||+++|++++++|
T Consensus 35 m~~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~-----------~~~~~DlvllD~~lp~~~G~~l~~~l 103 (249)
T 3q9s_A 35 MNEQRILVIEDDHDIANVLRMDLTDAGYVVDHADSAMNGLIKA-----------REDHPDLILLDLGLPDFDGGDVVQRL 103 (249)
T ss_dssp --CCEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHH-----------HHSCCSEEEEECCSCHHHHHHHHHHH
T ss_pred CCCCEEEEEECCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHH-----------hcCCCCEEEEcCCCCCCCHHHHHHHH
Confidence 4567999999999999999999999999999999999999988 34579999999999999999999999
Q ss_pred hccCCCCCCcEEEEeCCCcHHHHHHHHHcCCceEEeCCCCHHHHHHHHHHHhhh
Q 026776 107 KDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVKLSDVKRIKDYLTRD 160 (233)
Q Consensus 107 r~~~~~~~~piIvlt~~~~~~~~~~al~~Ga~dyL~KP~~~~eL~~~~~~l~~~ 160 (233)
|+ .+ .+|||++|+..+.+...++++.|+++||.||++.++|...++.+.+.
T Consensus 104 r~-~~--~~~iI~lt~~~~~~~~~~a~~~Ga~~yl~Kp~~~~~L~~~i~~~l~~ 154 (249)
T 3q9s_A 104 RK-NS--ALPIIVLTARDTVEEKVRLLGLGADDYLIKPFHPDELLARVKVQLRQ 154 (249)
T ss_dssp HT-TC--CCCEEEEESCCSHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHCC
T ss_pred Hc-CC--CCCEEEEECCCCHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHhh
Confidence 97 33 78999999999999999999999999999999999998877766543
No 67
>1qkk_A DCTD, C4-dicarboxylate transport transcriptional regulatory protein; receiver domain, 2-component signal transduction; 1.7A {Sinorhizobium meliloti} SCOP: c.23.1.1 PDB: 1l5z_A 1l5y_A
Probab=99.84 E-value=1.7e-20 Score=143.95 Aligned_cols=120 Identities=25% Similarity=0.406 Sum_probs=108.5
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHhhcCCEEEEECCHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCCCCCHHHHHHHHh
Q 026776 28 EEVHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKKIK 107 (233)
Q Consensus 28 ~~~~ILIVddd~~~~~~l~~~L~~~g~~v~~a~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp~~~g~~ll~~Lr 107 (233)
.+++||||||++..+..+..+|...||.|..+.++.++++.+ ....||+||+|+.||+++|+++++.|+
T Consensus 2 ~~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l-----------~~~~~dliild~~l~~~~g~~~~~~l~ 70 (155)
T 1qkk_A 2 AAPSVFLIDDDRDLRKAMQQTLELAGFTVSSFASATEALAGL-----------SADFAGIVISDIRMPGMDGLALFRKIL 70 (155)
T ss_dssp --CEEEEECSCHHHHHHHHHHHHHTTCEEEEESCHHHHHHTC-----------CTTCCSEEEEESCCSSSCHHHHHHHHH
T ss_pred CCCEEEEEeCCHHHHHHHHHHHHHcCcEEEEECCHHHHHHHH-----------HhCCCCEEEEeCCCCCCCHHHHHHHHH
Confidence 368999999999999999999999999999999999999988 556799999999999999999999999
Q ss_pred ccCCCCCCcEEEEeCCCcHHHHHHHHHcCCceEEeCCCCHHHHHHHHHHHhhh
Q 026776 108 DSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVKLSDVKRIKDYLTRD 160 (233)
Q Consensus 108 ~~~~~~~~piIvlt~~~~~~~~~~al~~Ga~dyL~KP~~~~eL~~~~~~l~~~ 160 (233)
+..+ .+|||++++..+......+++.|+++||.||++.++|...+..+.+.
T Consensus 71 ~~~~--~~pii~ls~~~~~~~~~~~~~~g~~~~l~kP~~~~~L~~~i~~~~~~ 121 (155)
T 1qkk_A 71 ALDP--DLPMILVTGHGDIPMAVQAIQDGAYDFIAKPFAADRLVQSARRAEEK 121 (155)
T ss_dssp HHCT--TSCEEEEECGGGHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHHHH
T ss_pred hhCC--CCCEEEEECCCChHHHHHHHhcCCCeEEeCCCCHHHHHHHHHHHHHH
Confidence 8754 89999999999888899999999999999999999998777766544
No 68
>1a04_A Nitrate/nitrite response regulator protein NARL; signal transduction protein, response regulators, two- component systems; 2.20A {Escherichia coli} SCOP: a.4.6.2 c.23.1.1 PDB: 1rnl_A
Probab=99.84 E-value=4.4e-20 Score=149.38 Aligned_cols=120 Identities=25% Similarity=0.440 Sum_probs=107.7
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHhhcC-CEE-EEECCHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCCCCCHHHHHHH
Q 026776 28 EEVHVLAVDDSFVDRKVIERLLTISS-CKV-TAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKK 105 (233)
Q Consensus 28 ~~~~ILIVddd~~~~~~l~~~L~~~g-~~v-~~a~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp~~~g~~ll~~ 105 (233)
+.++||||||++..+..+..+|+..+ +.+ ..+.++.++++.+. ...||+||+|+.||+++|+++++.
T Consensus 4 ~~~~ilivdd~~~~~~~l~~~L~~~~~~~vv~~~~~~~~al~~~~-----------~~~~dlvllD~~lp~~~g~~~~~~ 72 (215)
T 1a04_A 4 EPATILLIDDHPMLRTGVKQLISMAPDITVVGEASNGEQGIELAE-----------SLDPDLILLDLNMPGMNGLETLDK 72 (215)
T ss_dssp CCEEEEEECSCHHHHHHHHHHHTTCTTEEEEEEESSHHHHHHHHH-----------HHCCSEEEEETTSTTSCHHHHHHH
T ss_pred CceEEEEECCCHHHHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHH-----------hcCCCEEEEeCCCCCCcHHHHHHH
Confidence 45899999999999999999998874 877 68999999999883 456999999999999999999999
Q ss_pred HhccCCCCCCcEEEEeCCCcHHHHHHHHHcCCceEEeCCCCHHHHHHHHHHHhhh
Q 026776 106 IKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVKLSDVKRIKDYLTRD 160 (233)
Q Consensus 106 Lr~~~~~~~~piIvlt~~~~~~~~~~al~~Ga~dyL~KP~~~~eL~~~~~~l~~~ 160 (233)
|++..+ .+|||++|+..+.+...++++.|+++||.||++.++|...++.+.+.
T Consensus 73 lr~~~~--~~~ii~ls~~~~~~~~~~~~~~Ga~~~l~Kp~~~~~L~~~i~~~~~~ 125 (215)
T 1a04_A 73 LREKSL--SGRIVVFSVSNHEEDVVTALKRGADGYLLKDMEPEDLLKALHQAAAG 125 (215)
T ss_dssp HHHSCC--CSEEEEEECCCCHHHHHHHHHTTCSEEEETTCCHHHHHHHHHHHHHS
T ss_pred HHHhCC--CCcEEEEECCCCHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHcC
Confidence 998755 89999999999999999999999999999999999998877766553
No 69
>3cg4_A Response regulator receiver domain protein (CHEY-; structural genomics, unknown function; HET: MSE; 1.61A {Methanospirillum hungatei jf-1}
Probab=99.84 E-value=1.1e-20 Score=142.59 Aligned_cols=124 Identities=23% Similarity=0.377 Sum_probs=109.8
Q ss_pred CCCcEEEEEeCCHHHHHHHHHHHhhcCCEEEEECCHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCCCCCHHHHHHHH
Q 026776 27 TEEVHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKKI 106 (233)
Q Consensus 27 ~~~~~ILIVddd~~~~~~l~~~L~~~g~~v~~a~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp~~~g~~ll~~L 106 (233)
..+++||||||++..+..+..+|+..||+|..+.++.++++.+ ....||+||+|+.||+++|+++++.|
T Consensus 5 ~~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l-----------~~~~~dlii~d~~l~~~~g~~~~~~l 73 (142)
T 3cg4_A 5 EHKGDVMIVDDDAHVRIAVKTILSDAGFHIISADSGGQCIDLL-----------KKGFSGVVLLDIMMPGMDGWDTIRAI 73 (142)
T ss_dssp -CCCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHH-----------HTCCCEEEEEESCCSSSCHHHHHHHH
T ss_pred CCCCeEEEEcCCHHHHHHHHHHHHHCCeEEEEeCCHHHHHHHH-----------HhcCCCEEEEeCCCCCCCHHHHHHHH
Confidence 3578999999999999999999999999999999999999998 45579999999999999999999999
Q ss_pred hccCCCCCCcEEEEeCCCcHHHHHHHHHcCCceEEeCCCCHHHHHHHHHHHhhhh
Q 026776 107 KDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVKLSDVKRIKDYLTRDV 161 (233)
Q Consensus 107 r~~~~~~~~piIvlt~~~~~~~~~~al~~Ga~dyL~KP~~~~eL~~~~~~l~~~~ 161 (233)
++......+|||++++..+.....++++.|+++||.||++.++|...++.+.+..
T Consensus 74 ~~~~~~~~~pii~~s~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~~~~ 128 (142)
T 3cg4_A 74 LDNSLEQGIAIVMLTAKNAPDAKMIGLQEYVVDYITKPFDNEDLIEKTTFFMGFV 128 (142)
T ss_dssp HHTTCCTTEEEEEEECTTCCCCSSTTGGGGEEEEEESSCCHHHHHHHHHHHHHHH
T ss_pred HhhcccCCCCEEEEECCCCHHHHHHHHhcCccEEEeCCCCHHHHHHHHHHHHHHH
Confidence 9843344899999999887777788999999999999999999988777666543
No 70
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=99.84 E-value=9.8e-21 Score=166.48 Aligned_cols=118 Identities=19% Similarity=0.278 Sum_probs=108.5
Q ss_pred EEEEEeCCHHHHHHHHHHHhhcCCEEEEECCHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCCCCCHHHHHHHHhccC
Q 026776 31 HVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKKIKDSS 110 (233)
Q Consensus 31 ~ILIVddd~~~~~~l~~~L~~~g~~v~~a~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp~~~g~~ll~~Lr~~~ 110 (233)
+||||||++..+..++.+|+..||.|..+.++.+|++.+ ....||+||+|+.||+++|++++++|++..
T Consensus 2 ~ILiVDDd~~~~~~l~~~L~~~g~~v~~a~~~~eal~~l-----------~~~~~DlvllDi~mP~~dG~ell~~lr~~~ 70 (368)
T 3dzd_A 2 RVLVVDDEESITSSLSAILEEEGYHPDTAKTLREAEKKI-----------KELFFPVIVLDVWMPDGDGVNFIDFIKENS 70 (368)
T ss_dssp EEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHH-----------HHBCCSEEEEESEETTEETTTHHHHHHHHC
T ss_pred EEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHH-----------HhCCCCEEEEeCCCCCCCHHHHHHHHHhhC
Confidence 799999999999999999999999999999999999998 345799999999999999999999999876
Q ss_pred CCCCCcEEEEeCCCcHHHHHHHHHcCCceEEeCCCCHHHHHHHHHHHhhhh
Q 026776 111 ALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVKLSDVKRIKDYLTRDV 161 (233)
Q Consensus 111 ~~~~~piIvlt~~~~~~~~~~al~~Ga~dyL~KP~~~~eL~~~~~~l~~~~ 161 (233)
+ .+|||++|++.+.+...++++.||++||.||++.++|...+..+.+..
T Consensus 71 ~--~~pvI~lT~~~~~~~~~~a~~~Ga~~yl~KP~~~~~L~~~i~~~l~~~ 119 (368)
T 3dzd_A 71 P--DSVVIVITGHGSVDTAVKAIKKGAYEFLEKPFSVERFLLTIKHAFEEY 119 (368)
T ss_dssp T--TCEEEEEECSSCCHHHHHHHHHTCCEEEESSCCHHHHHHHHHHHHHHH
T ss_pred C--CCeEEEEeCCCCHHHHHHHHhcCcceEEeCCCCHHHHHHHHHHHHHHh
Confidence 5 899999999999899999999999999999999999987777665543
No 71
>3cg0_A Response regulator receiver modulated diguanylate with PAS/PAC sensor; signal receiver domain, diguanylate cyclase; 2.15A {Desulfovibrio desulfuricans subsp}
Probab=99.84 E-value=5.1e-20 Score=138.38 Aligned_cols=121 Identities=17% Similarity=0.300 Sum_probs=108.5
Q ss_pred CCCcEEEEEeCCHHHHHHHHHHHhhcCCEEE-EECCHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCC-CCCHHHHHH
Q 026776 27 TEEVHVLAVDDSFVDRKVIERLLTISSCKVT-AVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMP-GMTGYELLK 104 (233)
Q Consensus 27 ~~~~~ILIVddd~~~~~~l~~~L~~~g~~v~-~a~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp-~~~g~~ll~ 104 (233)
...++||||||++..+..+...|+..||.+. .+.++.++++.+. ...||+||+|+.+| +++|+++++
T Consensus 7 ~~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~~a~~~~~-----------~~~~dlii~d~~~~~~~~g~~~~~ 75 (140)
T 3cg0_A 7 DDLPGVLIVEDGRLAAATLRIQLESLGYDVLGVFDNGEEAVRCAP-----------DLRPDIALVDIMLCGALDGVETAA 75 (140)
T ss_dssp -CCCEEEEECCBHHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHH-----------HHCCSEEEEESSCCSSSCHHHHHH
T ss_pred CCCceEEEEECCHHHHHHHHHHHHHCCCeeEEEECCHHHHHHHHH-----------hCCCCEEEEecCCCCCCCHHHHHH
Confidence 3568999999999999999999999999999 5999999999883 44699999999998 799999999
Q ss_pred HHhccCCCCCCcEEEEeCCCcHHHHHHHHHcCCceEEeCCCCHHHHHHHHHHHhhhh
Q 026776 105 KIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVKLSDVKRIKDYLTRDV 161 (233)
Q Consensus 105 ~Lr~~~~~~~~piIvlt~~~~~~~~~~al~~Ga~dyL~KP~~~~eL~~~~~~l~~~~ 161 (233)
.|++. + .+|||++++..+.....++++.|+++||.||++.++|...++.+.+..
T Consensus 76 ~l~~~-~--~~~ii~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~~~~ 129 (140)
T 3cg0_A 76 RLAAG-C--NLPIIFITSSQDVETFQRAKRVNPFGYLAKPVAADTLHRSIEMAIHKK 129 (140)
T ss_dssp HHHHH-S--CCCEEEEECCCCHHHHHHHHTTCCSEEEEESCCHHHHHHHHHHHHHHH
T ss_pred HHHhC-C--CCCEEEEecCCCHHHHHHHHhcCCCEEEeCCCCHHHHHHHHHHHHhcc
Confidence 99987 4 899999999999988999999999999999999999988777665543
No 72
>1zh2_A KDP operon transcriptional regulatory protein KDPE; two-component system, gene regulation, transcription factor, KDP potassium transport system; 2.00A {Escherichia coli} SCOP: c.23.1.1 PDB: 1zh4_A
Probab=99.84 E-value=5.7e-20 Score=134.56 Aligned_cols=116 Identities=24% Similarity=0.388 Sum_probs=104.3
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhcCCEEEEECCHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCCCCCHHHHHHHHhcc
Q 026776 30 VHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKKIKDS 109 (233)
Q Consensus 30 ~~ILIVddd~~~~~~l~~~L~~~g~~v~~a~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp~~~g~~ll~~Lr~~ 109 (233)
++||||||++..+..+...|...||.+..+.++.+++..+. ...||+||+|+.||+++|+++++.+++
T Consensus 2 ~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~~-----------~~~~dlvi~D~~l~~~~g~~~~~~l~~- 69 (121)
T 1zh2_A 2 TNVLIVEDEQAIRRFLRTALEGDGMRVFEAETLQRGLLEAA-----------TRKPDLIILDLGLPDGDGIEFIRDLRQ- 69 (121)
T ss_dssp CEEEEECSCHHHHHHHHHHHHTTTCEEEEESSHHHHHHHHH-----------HHCCSEEEEESEETTEEHHHHHHHHHT-
T ss_pred cEEEEEeCCHHHHHHHHHHHhcCCCEEEEeCCHHHHHHHHh-----------cCCCCEEEEeCCCCCCcHHHHHHHHHh-
Confidence 57999999999999999999999999999999999998873 346999999999999999999999994
Q ss_pred CCCCCCcEEEEeCCCcHHHHHHHHHcCCceEEeCCCCHHHHHHHHHHHhh
Q 026776 110 SALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVKLSDVKRIKDYLTR 159 (233)
Q Consensus 110 ~~~~~~piIvlt~~~~~~~~~~al~~Ga~dyL~KP~~~~eL~~~~~~l~~ 159 (233)
. +.+|+|++++..+.....++++.|+++|+.||++.++|...++.+.+
T Consensus 70 ~--~~~~ii~~s~~~~~~~~~~~~~~g~~~~l~Kp~~~~~l~~~i~~~~~ 117 (121)
T 1zh2_A 70 W--SAVPVIVLSARSEESDKIAALDAGADDYLSKPFGIGELQARLRVALR 117 (121)
T ss_dssp T--CCCCEEEEESCCSHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHH
T ss_pred C--CCCcEEEEECCCCHHHHHHHHhcCCCeEEeCCcCHHHHHHHHHHHHH
Confidence 3 37899999999998888999999999999999999999877766544
No 73
>3kcn_A Adenylate cyclase homolog; SGX, PSI 2, structural genomics, protein structure initiative; 2.45A {Rhodopirellula baltica}
Probab=99.84 E-value=9e-20 Score=139.47 Aligned_cols=121 Identities=25% Similarity=0.390 Sum_probs=107.4
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHhhcCCEEEEECCHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCCCCCHHHHHHHHh
Q 026776 28 EEVHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKKIK 107 (233)
Q Consensus 28 ~~~~ILIVddd~~~~~~l~~~L~~~g~~v~~a~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp~~~g~~ll~~Lr 107 (233)
..++||||||++..+..+..+|+. ||.+..+.++.++++.+. ....||+||+|+.||+++|+++++.|+
T Consensus 3 ~~~~ILivdd~~~~~~~l~~~L~~-~~~v~~~~~~~~a~~~l~----------~~~~~dlvi~D~~l~~~~g~~~~~~l~ 71 (151)
T 3kcn_A 3 LNERILLVDDDYSLLNTLKRNLSF-DFEVTTCESGPEALACIK----------KSDPFSVIMVDMRMPGMEGTEVIQKAR 71 (151)
T ss_dssp CCCEEEEECSCHHHHHHHHHHHTT-TSEEEEESSHHHHHHHHH----------HSCCCSEEEEESCCSSSCHHHHHHHHH
T ss_pred CCCeEEEEeCCHHHHHHHHHHhcc-CceEEEeCCHHHHHHHHH----------cCCCCCEEEEeCCCCCCcHHHHHHHHH
Confidence 357999999999999999999975 899999999999999984 122469999999999999999999999
Q ss_pred ccCCCCCCcEEEEeCCCcHHHHHHHHHcC-CceEEeCCCCHHHHHHHHHHHhhhh
Q 026776 108 DSSALREIPVVIMSSENILARIDRCLEDG-AEDFIVKPVKLSDVKRIKDYLTRDV 161 (233)
Q Consensus 108 ~~~~~~~~piIvlt~~~~~~~~~~al~~G-a~dyL~KP~~~~eL~~~~~~l~~~~ 161 (233)
+..+ .+|||++++..+.....++++.| +++||.||++.++|...+..+.+..
T Consensus 72 ~~~~--~~~ii~~s~~~~~~~~~~~~~~g~~~~~l~KP~~~~~L~~~i~~~l~~~ 124 (151)
T 3kcn_A 72 LISP--NSVYLMLTGNQDLTTAMEAVNEGQVFRFLNKPCQMSDIKAAINAGIKQY 124 (151)
T ss_dssp HHCS--SCEEEEEECGGGHHHHHHHHHHTCCSEEEESSCCHHHHHHHHHHHHHHH
T ss_pred hcCC--CcEEEEEECCCCHHHHHHHHHcCCeeEEEcCCCCHHHHHHHHHHHHHHH
Confidence 8765 89999999999999999999999 9999999999999987777665543
No 74
>3cz5_A Two-component response regulator, LUXR family; structural genomics, protein structure initiative; 2.70A {Aurantimonas SP}
Probab=99.84 E-value=1.1e-19 Score=139.26 Aligned_cols=119 Identities=18% Similarity=0.298 Sum_probs=108.6
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHhh-cCCEEE-EECCHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCCCCCHHHHHHH
Q 026776 28 EEVHVLAVDDSFVDRKVIERLLTI-SSCKVT-AVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKK 105 (233)
Q Consensus 28 ~~~~ILIVddd~~~~~~l~~~L~~-~g~~v~-~a~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp~~~g~~ll~~ 105 (233)
+.++||||||++..+..+..+|.. .||.+. .+.++.++++.+ ....||+||+|+.|++++|++++++
T Consensus 4 ~~~~ILivdd~~~~~~~l~~~L~~~~~~~v~~~~~~~~~a~~~l-----------~~~~~dlii~D~~l~~~~g~~~~~~ 72 (153)
T 3cz5_A 4 STARIMLVDDHPIVREGYRRLIERRPGYAVVAEAADAGEAYRLY-----------RETTPDIVVMDLTLPGPGGIEATRH 72 (153)
T ss_dssp CCEEEEEECSCHHHHHHHHHHHTTSTTEEEEEEESSHHHHHHHH-----------HTTCCSEEEECSCCSSSCHHHHHHH
T ss_pred cccEEEEECCcHHHHHHHHHHHhhCCCcEEEEEeCCHHHHHHHH-----------hcCCCCEEEEecCCCCCCHHHHHHH
Confidence 468999999999999999999998 799988 899999999988 4557999999999999999999999
Q ss_pred HhccCCCCCCcEEEEeCCCcHHHHHHHHHcCCceEEeCCCCHHHHHHHHHHHhh
Q 026776 106 IKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVKLSDVKRIKDYLTR 159 (233)
Q Consensus 106 Lr~~~~~~~~piIvlt~~~~~~~~~~al~~Ga~dyL~KP~~~~eL~~~~~~l~~ 159 (233)
|++..+ .+|||++++..+.....++++.|+++||.||++.++|...++.+.+
T Consensus 73 l~~~~~--~~~ii~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~L~~~i~~~~~ 124 (153)
T 3cz5_A 73 IRQWDG--AARILIFTMHQGSAFALKAFEAGASGYVTKSSDPAELVQAIEAILA 124 (153)
T ss_dssp HHHHCT--TCCEEEEESCCSHHHHHHHHHTTCSEEEETTSCTTHHHHHHHHHTT
T ss_pred HHHhCC--CCeEEEEECCCCHHHHHHHHHCCCcEEEecCCCHHHHHHHHHHHHh
Confidence 998755 8999999999998999999999999999999999999888776654
No 75
>3a10_A Response regulator; phosphoacceptor, signaling protein; HET: MSE PG4; 1.63A {Thermotoga maritima} PDB: 3a0r_B* 3a0u_A*
Probab=99.83 E-value=3.9e-20 Score=134.75 Aligned_cols=113 Identities=21% Similarity=0.373 Sum_probs=100.6
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhcCCEEEEECCHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCCCCCHHHHHHHHhcc
Q 026776 30 VHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKKIKDS 109 (233)
Q Consensus 30 ~~ILIVddd~~~~~~l~~~L~~~g~~v~~a~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp~~~g~~ll~~Lr~~ 109 (233)
.+||||||++..+..+...|+..||.+..+.++.++++.+. ...||+||+|+.||+++|+++++.|++.
T Consensus 2 ~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~a~~~~~-----------~~~~dlvl~D~~l~~~~g~~~~~~l~~~ 70 (116)
T 3a10_A 2 KRILVVDDEPNIRELLKEELQEEGYEIDTAENGEEALKKFF-----------SGNYDLVILDIEMPGISGLEVAGEIRKK 70 (116)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHHH-----------HSCCSEEEECSCCSSSCHHHHHHHHHHH
T ss_pred cEEEEEeCCHHHHHHHHHHHHHCCCEEEEeCCHHHHHHHHh-----------cCCCCEEEEECCCCCCCHHHHHHHHHcc
Confidence 47999999999999999999999999999999999999883 4569999999999999999999999987
Q ss_pred CCCCCCcEEEEeCCCcHHHHHHHHHcCCceEEeCCCCHHHHHHHHHHH
Q 026776 110 SALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVKLSDVKRIKDYL 157 (233)
Q Consensus 110 ~~~~~~piIvlt~~~~~~~~~~al~~Ga~dyL~KP~~~~eL~~~~~~l 157 (233)
.+ .+|+|++++..+.. ..+++.|+++|+.||++.++|...++.+
T Consensus 71 ~~--~~~ii~~s~~~~~~--~~~~~~g~~~~l~Kp~~~~~l~~~i~~~ 114 (116)
T 3a10_A 71 KK--DAKIILLTAYSHYR--SDMSSWAADEYVVKSFNFDELKEKVKKL 114 (116)
T ss_dssp CT--TCCEEEEESCGGGG--GCGGGGGSSEEEECCSSTHHHHHHHHHH
T ss_pred CC--CCeEEEEECCcchH--HHHHhccccceEECCCCHHHHHHHHHHH
Confidence 54 88999999876544 6788999999999999999997776554
No 76
>3cu5_A Two component transcriptional regulator, ARAC FAM; structural genomics, protein structure initiative; 2.60A {Clostridium phytofermentans isdg}
Probab=99.83 E-value=3e-20 Score=140.85 Aligned_cols=118 Identities=22% Similarity=0.276 Sum_probs=98.7
Q ss_pred cEEEEEeCCHHHHHHHHHHHhh--cCCEEE-EECCHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCCCCCHHHHHHHH
Q 026776 30 VHVLAVDDSFVDRKVIERLLTI--SSCKVT-AVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKKI 106 (233)
Q Consensus 30 ~~ILIVddd~~~~~~l~~~L~~--~g~~v~-~a~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp~~~g~~ll~~L 106 (233)
++||||||++..+..+...|.. .|+.+. .+.++.++++.+ ....||+||+|+.||+++|+++++.|
T Consensus 3 ~~ILivdd~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~al~~~-----------~~~~~dlvllD~~lp~~~g~~l~~~l 71 (141)
T 3cu5_A 3 LRILIVDDEKLTRDGLIANINWKALSFDQIDQADDGINAIQIA-----------LKHPPNVLLTDVRMPRMDGIELVDNI 71 (141)
T ss_dssp CEEEEECSCHHHHHHHHHHCCGGGSCCSEEEEESSHHHHHHHH-----------TTSCCSEEEEESCCSSSCHHHHHHHH
T ss_pred ceEEEEeCCHHHHHHHHHHHHHccCCcEEeeecccHHHHHHHH-----------hcCCCCEEEEeCCCCCCCHHHHHHHH
Confidence 6899999999999999999973 578776 899999999988 45679999999999999999999999
Q ss_pred hccCCCCCCcEEEEeCCCcHHHHHHHHHcCCceEEeCCCCHHHHHHHHHHHhhh
Q 026776 107 KDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVKLSDVKRIKDYLTRD 160 (233)
Q Consensus 107 r~~~~~~~~piIvlt~~~~~~~~~~al~~Ga~dyL~KP~~~~eL~~~~~~l~~~ 160 (233)
++..+ .+|||++|+..+.....++++.|+++||.||++.++|...++.+.+.
T Consensus 72 ~~~~~--~~~ii~ls~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~~~~ 123 (141)
T 3cu5_A 72 LKLYP--DCSVIFMSGYSDKEYLKAAIKFRAIRYVEKPIDPSEIMDALKQSIQT 123 (141)
T ss_dssp HHHCT--TCEEEEECCSTTTCCC------CCCEEECSSCCHHHHHHHHHHHHHH
T ss_pred HhhCC--CCcEEEEeCCCcHHHHHHHHhCCccEEEeCCCCHHHHHHHHHHHHHH
Confidence 98654 89999999988877788999999999999999999998777665543
No 77
>3eqz_A Response regulator; structural genomics, unknown function, PSI-2, protein struct initiative; 2.15A {Colwellia psychrerythraea} SCOP: c.23.1.0
Probab=99.83 E-value=3.7e-20 Score=138.15 Aligned_cols=119 Identities=18% Similarity=0.241 Sum_probs=105.7
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHhhcCCEEEEECCHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCCCCCHHHHHHHHh
Q 026776 28 EEVHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKKIK 107 (233)
Q Consensus 28 ~~~~ILIVddd~~~~~~l~~~L~~~g~~v~~a~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp~~~g~~ll~~Lr 107 (233)
.+++||||||++..+..++.+|+..++.+..+.++++++..+ ... ||+||+|+.||+++|+++++.|+
T Consensus 2 ~~~~ilivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~~~~~~-----------~~~-~dlvi~D~~l~~~~g~~~~~~l~ 69 (135)
T 3eqz_A 2 SLNRVFIVDDDTLTCNLLKTIVEPIFGNVEAFQHPRAFLTLS-----------LNK-QDIIILDLMMPDMDGIEVIRHLA 69 (135)
T ss_dssp -CCEEEEECSCHHHHHHHHHHHTTTCSCEEEESCHHHHTTSC-----------CCT-TEEEEEECCTTTTHHHHHHHHHH
T ss_pred CcceEEEEeCCHHHHHHHHHHHHhhcceeeeecCHHHHHHhh-----------ccC-CCEEEEeCCCCCCCHHHHHHHHH
Confidence 358999999999999999999998888999999999998876 455 99999999999999999999999
Q ss_pred ccCCCCCCcEEEEeCCCcH-----HHHHHHHHcCCceEEeCCCCHHHHHHHHHHHhhh
Q 026776 108 DSSALREIPVVIMSSENIL-----ARIDRCLEDGAEDFIVKPVKLSDVKRIKDYLTRD 160 (233)
Q Consensus 108 ~~~~~~~~piIvlt~~~~~-----~~~~~al~~Ga~dyL~KP~~~~eL~~~~~~l~~~ 160 (233)
+..+ .+|+|++++..+. ....+++..|+++||.||++.++|...++.+...
T Consensus 70 ~~~~--~~~ii~~s~~~~~~~~~~~~~~~~~~~g~~~~l~KP~~~~~l~~~l~~~~~~ 125 (135)
T 3eqz_A 70 EHKS--PASLILISGYDSGVLHSAETLALSCGLNVINTFTKPINTEVLTCFLTSLSNR 125 (135)
T ss_dssp HTTC--CCEEEEEESSCHHHHHHHHHHHHHTTCEEEEEEESSCCHHHHHHHHHHHSCC
T ss_pred hCCC--CCCEEEEEeccchhHHHHHHHHHHcCCCcceeeCCCCCHHHHHHHHHHHHhh
Confidence 8765 8999999998874 6667788999999999999999998888776543
No 78
>2qvg_A Two component response regulator; NYSGXRC, PSI-2, structural genomics, protein structure initiative; 1.50A {Legionella pneumophila subsp}
Probab=99.83 E-value=1.2e-19 Score=136.98 Aligned_cols=125 Identities=24% Similarity=0.392 Sum_probs=107.0
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHhhcCC--EEEEECCHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCCCCCHHHHHHH
Q 026776 28 EEVHVLAVDDSFVDRKVIERLLTISSC--KVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKK 105 (233)
Q Consensus 28 ~~~~ILIVddd~~~~~~l~~~L~~~g~--~v~~a~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp~~~g~~ll~~ 105 (233)
++++||||||++..+..+...|+..|+ .+..+.++.++++.+...... ....||+||+|+.||+++|+++++.
T Consensus 6 ~~~~ILivdd~~~~~~~l~~~L~~~g~~~~v~~~~~~~~a~~~l~~~~~~-----~~~~~dlii~D~~l~~~~g~~~~~~ 80 (143)
T 2qvg_A 6 DKVDILYLEDDEVDIQSVERVFHKISSLIKIEIAKSGNQALDMLYGRNKE-----NKIHPKLILLDINIPKMNGIEFLKE 80 (143)
T ss_dssp -CCSEEEECCCHHHHHHHHHHHHHHCTTCCEEEESSHHHHHHHHHTCTTC-----CCCCCSEEEEETTCTTSCHHHHHHH
T ss_pred CCCeEEEEeCCHHHHHHHHHHHHHhCCCceEEEECCHHHHHHHHHhcccc-----cCCCCCEEEEecCCCCCCHHHHHHH
Confidence 468899999999999999999999998 999999999999988421000 0257999999999999999999999
Q ss_pred HhccCCCCCCcEEEEeCCCcHHHHHHHHHcCCceEEeCCCCHHHHHHHHHHH
Q 026776 106 IKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVKLSDVKRIKDYL 157 (233)
Q Consensus 106 Lr~~~~~~~~piIvlt~~~~~~~~~~al~~Ga~dyL~KP~~~~eL~~~~~~l 157 (233)
|++......+|+|++++..+.....++++.|+++||.||++.++|...+...
T Consensus 81 l~~~~~~~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~kP~~~~~L~~~~~~~ 132 (143)
T 2qvg_A 81 LRDDSSFTDIEVFVLTAAYTSKDKLAFESLNIRGHLIKPLDYGEAIKLFWIL 132 (143)
T ss_dssp HTTSGGGTTCEEEEEESCCCHHHHHHHTTTTCCEEEESSCCHHHHHHHHHHH
T ss_pred HHcCccccCCcEEEEeCCCCHHHHHHHHhcCCCeEEECCCCHHHHHHHHHHH
Confidence 9987533489999999999888999999999999999999999997775443
No 79
>1s8n_A Putative antiterminator; RV1626, structural genomics, transcriptional antiterminator, component system, PSI; 1.48A {Mycobacterium tuberculosis} SCOP: c.23.1.1 PDB: 1sd5_A
Probab=99.83 E-value=6.5e-20 Score=147.46 Aligned_cols=117 Identities=22% Similarity=0.359 Sum_probs=104.8
Q ss_pred CcEEEEEeCCHHHHHHHHHHHhhcCCEEE-EECCHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCCCCCHHHHHHHHh
Q 026776 29 EVHVLAVDDSFVDRKVIERLLTISSCKVT-AVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKKIK 107 (233)
Q Consensus 29 ~~~ILIVddd~~~~~~l~~~L~~~g~~v~-~a~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp~~~g~~ll~~Lr 107 (233)
+.+||||||++..+..+..+|...||.+. .+.++.++++.+. ...||+||+|+.||+++|+++++.|+
T Consensus 13 ~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~~al~~~~-----------~~~~dlvi~D~~~p~~~g~~~~~~l~ 81 (205)
T 1s8n_A 13 PRRVLIAEDEALIRMDLAEMLREEGYEIVGEAGDGQEAVELAE-----------LHKPDLVIMDVKMPRRDGIDAASEIA 81 (205)
T ss_dssp CCEEEEECSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHH-----------HHCCSEEEEESSCSSSCHHHHHHHHH
T ss_pred CccEEEEECCHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHh-----------hcCCCEEEEeCCCCCCChHHHHHHHH
Confidence 46899999999999999999999999988 8999999999883 45699999999999999999999999
Q ss_pred ccCCCCCCcEEEEeCCCcHHHHHHHHHcCCceEEeCCCCHHHHHHHHHHHhh
Q 026776 108 DSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVKLSDVKRIKDYLTR 159 (233)
Q Consensus 108 ~~~~~~~~piIvlt~~~~~~~~~~al~~Ga~dyL~KP~~~~eL~~~~~~l~~ 159 (233)
+..+ .|||++|++.+.....++++.|+++||.||++.++|...+..+.+
T Consensus 82 ~~~~---~pii~lt~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~~~ 130 (205)
T 1s8n_A 82 SKRI---APIVVLTAFSQRDLVERARDAGAMAYLVKPFSISDLIPAIELAVS 130 (205)
T ss_dssp HTTC---SCEEEEEEGGGHHHHHTTGGGSCEEEEEESCCHHHHHHHHHHHHH
T ss_pred hcCC---CCEEEEecCCCHHHHHHHHhcCCcEEEeCCCCHHHHHHHHHHHHH
Confidence 8653 499999999998899999999999999999999999766665543
No 80
>3eq2_A Probable two-component response regulator; adaptor sigmas, signaling protein; 3.40A {Pseudomonas aeruginosa} PDB: 3f7a_A
Probab=99.83 E-value=3.9e-20 Score=163.44 Aligned_cols=118 Identities=27% Similarity=0.483 Sum_probs=103.1
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHhhcCCEEEEECCHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCCCCCHHHHHHHHh
Q 026776 28 EEVHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKKIK 107 (233)
Q Consensus 28 ~~~~ILIVddd~~~~~~l~~~L~~~g~~v~~a~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp~~~g~~ll~~Lr 107 (233)
.+++||||||++..+..++.+|+..||+|..+.++.+|++.+ ....||+||+|+.||+++|++++++||
T Consensus 4 ~~~~iLivdD~~~~~~~l~~~L~~~g~~v~~a~~~~~al~~~-----------~~~~~dlvllD~~mp~~~G~~~~~~lr 72 (394)
T 3eq2_A 4 VSATLLIIDDDEVVRESLAAYLEDSNFKVLQALNGLQGLQIF-----------ESEQPDLVICDLRMPQIDGLELIRRIR 72 (394)
T ss_dssp CEEEEEEECSCHHHHHHHHHHHHHTTEEEEECSSHHHHHHHH-----------HHSCCSEEEECCCSSSSCTHHHHHHHH
T ss_pred CCCEEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHH-----------hhCCCCEEEEcCCCCCCCHHHHHHHHH
Confidence 358999999999999999999999999999999999999998 345799999999999999999999999
Q ss_pred ccCCCCCCcEEEEeCCCcHHHHHHHHHcCCceEEeCCC-CHHHHHHHHHHHh
Q 026776 108 DSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPV-KLSDVKRIKDYLT 158 (233)
Q Consensus 108 ~~~~~~~~piIvlt~~~~~~~~~~al~~Ga~dyL~KP~-~~~eL~~~~~~l~ 158 (233)
+..+ .+|||++|+..+.+...++++.|+++||.||+ +.++|.+.+..+.
T Consensus 73 ~~~~--~~pii~lt~~~~~~~~~~a~~~ga~~yl~KP~~~~~~l~~~i~~~~ 122 (394)
T 3eq2_A 73 QTAS--ETPIIVLSGAGVMSDAVEALRLGAADYLIKPLEDLAVLEHSVRRAL 122 (394)
T ss_dssp HTTC--CCCEEEC---CHHHHHHHHHHHTCSEECCSSCSCTHHHHHHHHHHH
T ss_pred hhCC--CCcEEEEEcCCCHHHHHHHHhcChhhEEECCCChHHHHHHHHHHHH
Confidence 8755 89999999999999999999999999999999 5777765554443
No 81
>1kgs_A DRRD, DNA binding response regulator D; DNA-binding protein, ALPH-beta sandwich, winged-helix, helix helix, DNA binding protein; HET: DNA MSE; 1.50A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1 PDB: 3nnn_A*
Probab=99.83 E-value=1.1e-19 Score=147.80 Aligned_cols=118 Identities=25% Similarity=0.370 Sum_probs=108.3
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhcCCEEEEECCHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCCCCCHHHHHHHHhcc
Q 026776 30 VHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKKIKDS 109 (233)
Q Consensus 30 ~~ILIVddd~~~~~~l~~~L~~~g~~v~~a~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp~~~g~~ll~~Lr~~ 109 (233)
++||||||++..+..+..+|...||.|..+.++.++++.+ ....||+||+|+.||+++|+++++.|++.
T Consensus 3 ~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~~-----------~~~~~dlvllD~~l~~~~g~~~~~~lr~~ 71 (225)
T 1kgs_A 3 VRVLVVEDERDLADLITEALKKEMFTVDVCYDGEEGMYMA-----------LNEPFDVVILDIMLPVHDGWEILKSMRES 71 (225)
T ss_dssp CEEEEECSSHHHHHHHHHHHHHTTCEEEEESSHHHHHHHH-----------HHSCCSEEEEESCCSSSCHHHHHHHHHHT
T ss_pred ceEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHH-----------hcCCCCEEEEeCCCCCCCHHHHHHHHHhc
Confidence 6899999999999999999999999999999999999988 34579999999999999999999999987
Q ss_pred CCCCCCcEEEEeCCCcHHHHHHHHHcCCceEEeCCCCHHHHHHHHHHHhhh
Q 026776 110 SALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVKLSDVKRIKDYLTRD 160 (233)
Q Consensus 110 ~~~~~~piIvlt~~~~~~~~~~al~~Ga~dyL~KP~~~~eL~~~~~~l~~~ 160 (233)
.+ .+|||++|+..+.....++++.|+++|+.||++.++|...+..+.+.
T Consensus 72 ~~--~~~ii~ls~~~~~~~~~~~~~~ga~~~l~Kp~~~~~l~~~i~~~~~~ 120 (225)
T 1kgs_A 72 GV--NTPVLMLTALSDVEYRVKGLNMGADDYLPKPFDLRELIARVRALIRR 120 (225)
T ss_dssp TC--CCCEEEEESSCHHHHHHHTCCCCCSEEEESSCCHHHHHHHHHHHHHH
T ss_pred CC--CCCEEEEeCCCCHHHHHHHHhCCccEEEeCCCCHHHHHHHHHHHHhh
Confidence 55 89999999999888899999999999999999999998877766554
No 82
>2gkg_A Response regulator homolog; social motility, receiver domain, signalling, high resolutio signaling protein; 1.00A {Myxococcus xanthus} PDB: 2i6f_A 2nt4_A 2nt3_A
Probab=99.83 E-value=9.2e-20 Score=134.21 Aligned_cols=119 Identities=19% Similarity=0.316 Sum_probs=105.7
Q ss_pred CcEEEEEeCCHHHHHHHHHHHhhcCCEEEEECCHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCC-CCCHHHHHHHHh
Q 026776 29 EVHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMP-GMTGYELLKKIK 107 (233)
Q Consensus 29 ~~~ILIVddd~~~~~~l~~~L~~~g~~v~~a~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp-~~~g~~ll~~Lr 107 (233)
+++||||||++..+..+...|+..||++..+.++.++++.+. ...||+||+|+.|| +++|+++++.|+
T Consensus 5 ~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~~~-----------~~~~dlvi~d~~~~~~~~g~~~~~~l~ 73 (127)
T 2gkg_A 5 SKKILIVESDTALSATLRSALEGRGFTVDETTDGKGSVEQIR-----------RDRPDLVVLAVDLSAGQNGYLICGKLK 73 (127)
T ss_dssp -CEEEEECSCHHHHHHHHHHHHHHTCEEEEECCHHHHHHHHH-----------HHCCSEEEEESBCGGGCBHHHHHHHHH
T ss_pred CCeEEEEeCCHHHHHHHHHHHHhcCceEEEecCHHHHHHHHH-----------hcCCCEEEEeCCCCCCCCHHHHHHHHh
Confidence 368999999999999999999999999999999999999883 44699999999999 999999999999
Q ss_pred ccCCCCCCcEEEEeCCCcHHHHHHHHHcCCceEEeCCCCHHHHHHHHHHHhh
Q 026776 108 DSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVKLSDVKRIKDYLTR 159 (233)
Q Consensus 108 ~~~~~~~~piIvlt~~~~~~~~~~al~~Ga~dyL~KP~~~~eL~~~~~~l~~ 159 (233)
+....+.+|+|++ +..+.....++++.|+++|+.||++.++|...++.+.+
T Consensus 74 ~~~~~~~~~ii~~-~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~~ 124 (127)
T 2gkg_A 74 KDDDLKNVPIVII-GNPDGFAQHRKLKAHADEYVAKPVDADQLVERAGALIG 124 (127)
T ss_dssp HSTTTTTSCEEEE-ECGGGHHHHHHSTTCCSEEEESSCCHHHHHHHHHHHHC
T ss_pred cCccccCCCEEEE-ecCCchhHHHHHHhCcchheeCCCCHHHHHHHHHHHHc
Confidence 8743458999999 77777888899999999999999999999877766543
No 83
>2jk1_A HUPR, hydrogenase transcriptional regulatory protein HU; nucleotide-binding, transcription regulation; 2.10A {Rhodobacter capsulatus} PDB: 2vui_B 2vuh_B
Probab=99.82 E-value=2.6e-19 Score=134.89 Aligned_cols=117 Identities=23% Similarity=0.298 Sum_probs=102.4
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhcCCEEEEECCHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCCCCCHHHHHHHHhcc
Q 026776 30 VHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKKIKDS 109 (233)
Q Consensus 30 ~~ILIVddd~~~~~~l~~~L~~~g~~v~~a~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp~~~g~~ll~~Lr~~ 109 (233)
.+||||||++..+..+..+|+.. |.+..+.++.++++.+. ...||+||+|+.||+++|+++++.|++.
T Consensus 2 ~~Ilivdd~~~~~~~l~~~l~~~-~~v~~~~~~~~a~~~~~-----------~~~~dlvl~D~~lp~~~g~~~~~~l~~~ 69 (139)
T 2jk1_A 2 PAILLVDDEPHSLAAMKLALEDD-FDVLTAQGAEAAIAILE-----------EEWVQVIICDQRMPGRTGVDFLTEVRER 69 (139)
T ss_dssp CEEEEECSSHHHHHHHHHHHTTT-SCEEEESSHHHHHHHHH-----------HSCEEEEEEESCCSSSCHHHHHHHHHHH
T ss_pred CeEEEEcCCHHHHHHHHHHhhcC-ceEEEcCCHHHHHHHHh-----------cCCCCEEEEeCCCCCCcHHHHHHHHHHh
Confidence 47999999999999999999875 99999999999999883 4569999999999999999999999986
Q ss_pred CCCCCCcEEEEeCCCcHHHHHHHHHc-CCceEEeCCCCHHHHHHHHHHHhhh
Q 026776 110 SALREIPVVIMSSENILARIDRCLED-GAEDFIVKPVKLSDVKRIKDYLTRD 160 (233)
Q Consensus 110 ~~~~~~piIvlt~~~~~~~~~~al~~-Ga~dyL~KP~~~~eL~~~~~~l~~~ 160 (233)
.+ .+|+|++++..+.....+++.. |+++||.||++.++|...++.+.+.
T Consensus 70 ~~--~~~ii~~s~~~~~~~~~~~~~~~ga~~~l~KP~~~~~L~~~i~~~~~~ 119 (139)
T 2jk1_A 70 WP--ETVRIIITGYTDSASMMAAINDAGIHQFLTKPWHPEQLLSSARNAARM 119 (139)
T ss_dssp CT--TSEEEEEESCTTCHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHHHHH
T ss_pred CC--CCcEEEEeCCCChHHHHHHHHhhchhhhccCCCCHHHHHHHHHHHHHH
Confidence 54 7899999998877777888875 5999999999999998777665543
No 84
>1ys7_A Transcriptional regulatory protein PRRA; response regulator, DNA binding domain, phosphorylation; 1.58A {Mycobacterium tuberculosis} SCOP: a.4.6.1 c.23.1.1 PDB: 1ys6_A
Probab=99.82 E-value=6.1e-20 Score=150.02 Aligned_cols=122 Identities=27% Similarity=0.381 Sum_probs=108.9
Q ss_pred CCCcEEEEEeCCHHHHHHHHHHHhhcCCEEEEECCHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCCCCCHHHHHHHH
Q 026776 27 TEEVHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKKI 106 (233)
Q Consensus 27 ~~~~~ILIVddd~~~~~~l~~~L~~~g~~v~~a~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp~~~g~~ll~~L 106 (233)
+..++||||||++..+..+..+|...||.|..+.++.++++.+ ....||+||+|+.||+++|+++++.|
T Consensus 5 ~~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~~-----------~~~~~dlvllD~~l~~~~g~~~~~~l 73 (233)
T 1ys7_A 5 VTSPRVLVVDDDSDVLASLERGLRLSGFEVATAVDGAEALRSA-----------TENRPDAIVLDINMPVLDGVSVVTAL 73 (233)
T ss_dssp --CCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHHH-----------HHSCCSEEEEESSCSSSCHHHHHHHH
T ss_pred CCCCeEEEEeCCHHHHHHHHHHHHhCCCEEEEECCHHHHHHHH-----------HhCCCCEEEEeCCCCCCCHHHHHHHH
Confidence 3468999999999999999999999999999999999999988 34579999999999999999999999
Q ss_pred hccCCCCCCcEEEEeCCCcHHHHHHHHHcCCceEEeCCCCHHHHHHHHHHHhhhh
Q 026776 107 KDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVKLSDVKRIKDYLTRDV 161 (233)
Q Consensus 107 r~~~~~~~~piIvlt~~~~~~~~~~al~~Ga~dyL~KP~~~~eL~~~~~~l~~~~ 161 (233)
++..+ .+|||++|+..+.....++++.|+++||.||++.++|...+..+.+..
T Consensus 74 ~~~~~--~~~ii~lt~~~~~~~~~~~~~~ga~~~l~Kp~~~~~L~~~i~~~~~~~ 126 (233)
T 1ys7_A 74 RAMDN--DVPVCVLSARSSVDDRVAGLEAGADDYLVKPFVLAELVARVKALLRRR 126 (233)
T ss_dssp HHTTC--CCCEEEEECCCTTTCCCTTTTTTCSEEEESSCCHHHHHHHHHHHHHHH
T ss_pred HhcCC--CCCEEEEEcCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHhhc
Confidence 98754 899999999988888888999999999999999999988777665543
No 85
>1w25_A Stalked-cell differentiation controlling protein; two-component system, ggdef domain, cyclic dinucleotide, cyclic-digmp; HET: C2E; 2.70A {Caulobacter vibrioides} SCOP: c.23.1.1 c.23.1.1 d.58.29.2 PDB: 2v0n_A* 2wb4_A*
Probab=99.82 E-value=2e-19 Score=161.64 Aligned_cols=119 Identities=32% Similarity=0.449 Sum_probs=107.9
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhcCCEEEEECCHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCCCCCHHHHHHHHhcc
Q 026776 30 VHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKKIKDS 109 (233)
Q Consensus 30 ~~ILIVddd~~~~~~l~~~L~~~g~~v~~a~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp~~~g~~ll~~Lr~~ 109 (233)
.+||||||++..+..+..+|...||.|..+.++.++++.+ ....||+||+|+.||+++|+++++.|++.
T Consensus 2 ~~iLivdD~~~~~~~l~~~L~~~~~~v~~a~~~~~al~~~-----------~~~~~dlvllD~~mp~~~G~~~~~~l~~~ 70 (459)
T 1w25_A 2 ARILVVDDIEANVRLLEAKLTAEYYEVSTAMDGPTALAMA-----------ARDLPDIILLDVMMPGMDGFTVCRKLKDD 70 (459)
T ss_dssp CEEEEECSSTTHHHHHHHHHHHTTCEEEEESSHHHHHHHH-----------HHHCCSEEEEESCCSSSCHHHHHHHHHHS
T ss_pred CeEEEEeCCHHHHHHHHHHHHHcCCEEEEECCHHHHHHHH-----------hcCCCCEEEEcCCCCCCCHHHHHHHHhcC
Confidence 4799999999999999999999999999999999999988 34569999999999999999999999986
Q ss_pred CCCCCCcEEEEeCCCcHHHHHHHHHcCCceEEeCCCCHHHHHHHHHHHhh
Q 026776 110 SALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVKLSDVKRIKDYLTR 159 (233)
Q Consensus 110 ~~~~~~piIvlt~~~~~~~~~~al~~Ga~dyL~KP~~~~eL~~~~~~l~~ 159 (233)
.....+|||++|+..+.....++++.||++||.||++.++|...++.+.+
T Consensus 71 ~~~~~~pii~lt~~~~~~~~~~a~~~Ga~~~l~KP~~~~~l~~~i~~~~~ 120 (459)
T 1w25_A 71 PTTRHIPVVLITALDGRGDRIQGLESGASDFLTKPIDDVMLFARVRSLTR 120 (459)
T ss_dssp TTTTTSCEEEEECSSCHHHHHHHHHHTCCEEEESSCCHHHHHHHHHHHHH
T ss_pred cccCCCCEEEEECCCCHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHH
Confidence 54458999999999999999999999999999999999999776665544
No 86
>2qsj_A DNA-binding response regulator, LUXR family; structural genomics, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi dss-3}
Probab=99.82 E-value=1.4e-19 Score=138.62 Aligned_cols=120 Identities=28% Similarity=0.324 Sum_probs=97.3
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHhhc-CC-EEEEECCHHHHHHHhhhhhhhhccCCCC-CcccEEEEcCCCCCCCHHHHHH
Q 026776 28 EEVHVLAVDDSFVDRKVIERLLTIS-SC-KVTAVDSGRRALQFLGLDEEQSINGFDG-LKVDLIITDYCMPGMTGYELLK 104 (233)
Q Consensus 28 ~~~~ILIVddd~~~~~~l~~~L~~~-g~-~v~~a~~~~~al~~l~~~~~~~~~~~~~-~~~DlvllD~~mp~~~g~~ll~ 104 (233)
+.++||||||++..+..+..+|... |+ .+..+.++.++++.+ .. ..||+||+|+.|++++|+++++
T Consensus 2 ~~~~iLivdd~~~~~~~l~~~L~~~~g~~~v~~~~~~~~a~~~l-----------~~~~~~dlvi~d~~l~~~~g~~~~~ 70 (154)
T 2qsj_A 2 SLTVVLIVDDHHLIRAGAKNLLEGAFSGMRVEGAETVSDALAFL-----------EADNTVDLILLDVNLPDAEAIDGLV 70 (154)
T ss_dssp -CEEEEEECSCHHHHHHHHHHHHHHCTTEEEEEESSHHHHHHHH-----------HTTCCCSEEEECC------CHHHHH
T ss_pred CccEEEEEcCCHHHHHHHHHHHHhCCCceEEEEecCHHHHHHHH-----------hccCCCCEEEEeCCCCCCchHHHHH
Confidence 4689999999999999999999987 87 788999999999998 34 6799999999999999999999
Q ss_pred HHhccCCCCCCcEEEEeCCCcHHHHHHHHHcCCceEEeCCCCHHHHHHHHHHHhhh
Q 026776 105 KIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVKLSDVKRIKDYLTRD 160 (233)
Q Consensus 105 ~Lr~~~~~~~~piIvlt~~~~~~~~~~al~~Ga~dyL~KP~~~~eL~~~~~~l~~~ 160 (233)
.|++..+ .+|||++++..+......+++.|+++||.||++.++|...+..+.+.
T Consensus 71 ~l~~~~~--~~~ii~ls~~~~~~~~~~~~~~g~~~~l~kp~~~~~L~~~l~~~~~~ 124 (154)
T 2qsj_A 71 RLKRFDP--SNAVALISGETDHELIRAALEAGADGFIPKSADPQVLIHAVSLILEG 124 (154)
T ss_dssp HHHHHCT--TSEEEEC-----CHHHHHHHHTTCCBBCCTTSCHHHHHHHHHHHHTT
T ss_pred HHHHhCC--CCeEEEEeCCCCHHHHHHHHHccCCEEEeCCCCHHHHHHHHHHHHcC
Confidence 9998755 89999999988888888999999999999999999998877766553
No 87
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=99.81 E-value=1.7e-19 Score=159.51 Aligned_cols=117 Identities=26% Similarity=0.486 Sum_probs=107.2
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhcCCEEEEECCHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCCCCCHHHHHHHHhcc
Q 026776 30 VHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKKIKDS 109 (233)
Q Consensus 30 ~~ILIVddd~~~~~~l~~~L~~~g~~v~~a~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp~~~g~~ll~~Lr~~ 109 (233)
++||||||++..+..+..+|+..||.|..+.++.++++.+ ....||+||+|+.||+++|++++++|++.
T Consensus 1 m~ILIVDDd~~~~~~l~~~L~~~g~~v~~a~~~~eal~~l-----------~~~~~DlvllD~~mp~~dG~ell~~lr~~ 69 (387)
T 1ny5_A 1 MNVLVIEDDKVFRGLLEEYLSMKGIKVESAERGKEAYKLL-----------SEKHFNVVLLDLLLPDVNGLEILKWIKER 69 (387)
T ss_dssp CEEEEECCCHHHHHHHHHHHHHHTCEEEEESSHHHHHHHH-----------HHSCCSEEEEESBCSSSBHHHHHHHHHHH
T ss_pred CEEEEEECCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHH-----------HhCCCCEEEEeCCCCCCCHHHHHHHHHhh
Confidence 5799999999999999999999999999999999999988 34579999999999999999999999987
Q ss_pred CCCCCCcEEEEeCCCcHHHHHHHHHcCCceEEeCCCCHHHHHHHHHHHhh
Q 026776 110 SALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVKLSDVKRIKDYLTR 159 (233)
Q Consensus 110 ~~~~~~piIvlt~~~~~~~~~~al~~Ga~dyL~KP~~~~eL~~~~~~l~~ 159 (233)
.+ .+|||++|++.+.+...++++.||++||.||++.++|...+..+.+
T Consensus 70 ~~--~~pvIvlT~~~~~~~~~~a~~~Ga~dyl~KP~~~~~L~~~i~~~l~ 117 (387)
T 1ny5_A 70 SP--ETEVIVITGHGTIKTAVEAMKMGAYDFLTKPCMLEEIELTINKAIE 117 (387)
T ss_dssp CT--TSEEEEEEETTCHHHHHHHHTTTCCEEEEESCCHHHHHHHHHHHHH
T ss_pred CC--CCcEEEEeCCCCHHHHHHHHhcCceEEecCCCCHHHHHHHHHHHHH
Confidence 55 8999999999999999999999999999999999999776665543
No 88
>2qv0_A Protein MRKE; structural genomics, transcription, PSI-2, protein structure initiative; 2.40A {Klebsiella pneumoniae}
Probab=99.81 E-value=6.9e-19 Score=132.88 Aligned_cols=119 Identities=26% Similarity=0.379 Sum_probs=101.4
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHhhc-CCE-EEEECCHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCCCCCHHHHHHH
Q 026776 28 EEVHVLAVDDSFVDRKVIERLLTIS-SCK-VTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKK 105 (233)
Q Consensus 28 ~~~~ILIVddd~~~~~~l~~~L~~~-g~~-v~~a~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp~~~g~~ll~~ 105 (233)
.+++||||||++..+..+..+|+.. ++. +..+.++.++++.+ ....||+||+|+.||+++|+++++.
T Consensus 8 ~~~~iLivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~al~~l-----------~~~~~dlvi~d~~l~~~~g~~~~~~ 76 (143)
T 2qv0_A 8 EKMKVIIVEDEFLAQQELSWLINTHSQMEIVGSFDDGLDVLKFL-----------QHNKVDAIFLDINIPSLDGVLLAQN 76 (143)
T ss_dssp --CEEEEECSCHHHHHHHHHHHHHHSCCEEEEEESCHHHHHHHH-----------HHCCCSEEEECSSCSSSCHHHHHHH
T ss_pred CceEEEEEcCCHHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHH-----------HhCCCCEEEEecCCCCCCHHHHHHH
Confidence 4689999999999999999999876 787 45899999999988 3456999999999999999999999
Q ss_pred HhccCCCCCCcEEEEeCCCcHHHHHHHHHcCCceEEeCCCCHHHHHHHHHHHhhhh
Q 026776 106 IKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVKLSDVKRIKDYLTRDV 161 (233)
Q Consensus 106 Lr~~~~~~~~piIvlt~~~~~~~~~~al~~Ga~dyL~KP~~~~eL~~~~~~l~~~~ 161 (233)
|++... ..+||++++..+ ...++++.|+++||.||++.++|...++.+.+..
T Consensus 77 l~~~~~--~~~ii~~s~~~~--~~~~~~~~g~~~~l~KP~~~~~l~~~i~~~~~~~ 128 (143)
T 2qv0_A 77 ISQFAH--KPFIVFITAWKE--HAVEAFELEAFDYILKPYQESRIINMLQKLTTAW 128 (143)
T ss_dssp HTTSTT--CCEEEEEESCCT--THHHHHHTTCSEEEESSCCHHHHHHHHHHHHHHH
T ss_pred HHccCC--CceEEEEeCCHH--HHHHHHhCCcceEEeCCCCHHHHHHHHHHHHHHH
Confidence 998654 678898988743 5678999999999999999999988777766544
No 89
>2rdm_A Response regulator receiver protein; structural genomics, unknown function, PSI-2, protein struct initiative; HET: MSE; 1.76A {Sinorhizobium medicae}
Probab=99.81 E-value=7.3e-19 Score=130.68 Aligned_cols=119 Identities=24% Similarity=0.306 Sum_probs=104.5
Q ss_pred CCCcEEEEEeCCHHHHHHHHHHHhhcCCEEEEECCHHHHHHHhhhhhhhhccCCCCC-cccEEEEcCCCCC-CCHHHHHH
Q 026776 27 TEEVHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGL-KVDLIITDYCMPG-MTGYELLK 104 (233)
Q Consensus 27 ~~~~~ILIVddd~~~~~~l~~~L~~~g~~v~~a~~~~~al~~l~~~~~~~~~~~~~~-~~DlvllD~~mp~-~~g~~ll~ 104 (233)
+++++||||||++..+..+...|...||.+..+.++.++++.+ ... .||+||+|+.||+ ++|+++++
T Consensus 3 m~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~a~~~l-----------~~~~~~dlvi~d~~l~~~~~g~~~~~ 71 (132)
T 2rdm_A 3 LEAVTILLADDEAILLLDFESTLTDAGFLVTAVSSGAKAIEML-----------KSGAAIDGVVTDIRFCQPPDGWQVAR 71 (132)
T ss_dssp CSSCEEEEECSSHHHHHHHHHHHHHTTCEEEEESSHHHHHHHH-----------HTTCCCCEEEEESCCSSSSCHHHHHH
T ss_pred CCCceEEEEcCcHHHHHHHHHHHHHcCCEEEEECCHHHHHHHH-----------HcCCCCCEEEEeeeCCCCCCHHHHHH
Confidence 3568999999999999999999999999999999999999998 344 7999999999997 99999999
Q ss_pred HHhccCCCCCCcEEEEeCCCcHHHHHHHHHcCCceEEeCCCCHHHHHHHHHHHhhh
Q 026776 105 KIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVKLSDVKRIKDYLTRD 160 (233)
Q Consensus 105 ~Lr~~~~~~~~piIvlt~~~~~~~~~~al~~Ga~dyL~KP~~~~eL~~~~~~l~~~ 160 (233)
.|++..+ .+|+|++++..+......+++.| +||.||++.++|...++.+.+.
T Consensus 72 ~l~~~~~--~~~ii~~s~~~~~~~~~~~~~~~--~~l~kP~~~~~l~~~i~~~~~~ 123 (132)
T 2rdm_A 72 VAREIDP--NMPIVYISGHAALEWASNGVPDS--IILEKPFTSAQLITAVSQLLNA 123 (132)
T ss_dssp HHHHHCT--TCCEEEEESSCCTTHHHHSCTTC--EEEESSCCHHHHHHHHHHHHHT
T ss_pred HHHhcCC--CCCEEEEeCCccHHHHHhhcCCc--ceEeCCCCHHHHHHHHHHHHhc
Confidence 9998754 89999999988777776776665 7999999999998877766553
No 90
>3kyj_B CHEY6 protein, putative histidine protein kinase; protein-protein interaction, histidine kinase, response regulator, phosphorylation; 1.40A {Rhodobacter sphaeroides} PDB: 3kyi_B*
Probab=99.80 E-value=1.8e-19 Score=136.72 Aligned_cols=112 Identities=29% Similarity=0.369 Sum_probs=93.9
Q ss_pred CCCCcEEEEEeCCHHHHHHHHHHHhhc-CCEEE-EECCHHHHHHHhhhhhhhhccCCCCC-cccEEEEcCCCCCCCHHHH
Q 026776 26 DTEEVHVLAVDDSFVDRKVIERLLTIS-SCKVT-AVDSGRRALQFLGLDEEQSINGFDGL-KVDLIITDYCMPGMTGYEL 102 (233)
Q Consensus 26 ~~~~~~ILIVddd~~~~~~l~~~L~~~-g~~v~-~a~~~~~al~~l~~~~~~~~~~~~~~-~~DlvllD~~mp~~~g~~l 102 (233)
...+.+||||||++..+..++.+|+.. |+.+. .+.++.++++.+. .. .||+||+|+.||+++|+++
T Consensus 10 ~~~~~~vlivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~al~~l~-----------~~~~~dlvilD~~l~~~~g~~~ 78 (145)
T 3kyj_B 10 HGSPYNVMIVDDAAMMRLYIASFIKTLPDFKVVAQAANGQEALDKLA-----------AQPNVDLILLDIEMPVMDGMEF 78 (145)
T ss_dssp -CCSEEEEEECSCHHHHHHHHHHHTTCTTEEEEEEESSHHHHHHHHH-----------HCTTCCEEEECTTSCCCTTCHH
T ss_pred CCCCCeEEEEcCCHHHHHHHHHHHHhCCCceEEEEECCHHHHHHHHh-----------cCCCCCEEEEeCCCCCCCHHHH
Confidence 456789999999999999999999988 88864 8999999999883 34 6999999999999999999
Q ss_pred HHHHhccCCCCCCcEEEEeC--CCcHHHHHHHHHcCCceEEeCCCCHHHHH
Q 026776 103 LKKIKDSSALREIPVVIMSS--ENILARIDRCLEDGAEDFIVKPVKLSDVK 151 (233)
Q Consensus 103 l~~Lr~~~~~~~~piIvlt~--~~~~~~~~~al~~Ga~dyL~KP~~~~eL~ 151 (233)
+++||+.. ..++|+++. ..+.....++++.|+++||.||++.++|.
T Consensus 79 ~~~lr~~~---~~~iiil~~~~~~~~~~~~~~~~~ga~~~l~KP~~~~~l~ 126 (145)
T 3kyj_B 79 LRHAKLKT---RAKICMLSSVAVSGSPHAARARELGADGVVAKPSGTVSHD 126 (145)
T ss_dssp HHHHHHHC---CCEEC-CBSSCSTTSSHHHHHHHTTCSCCCBCCCSCC---
T ss_pred HHHHHhcC---CCCeEEEEEeccCChHHHHHHHhCCCCEEEeCCCCHHHHH
Confidence 99999764 478888887 45556678899999999999999966653
No 91
>3klo_A Transcriptional regulator VPST; REC domain, HTH domain, DNA-binding, transcription regulation; HET: C2E TAR; 2.80A {Vibrio cholerae} PDB: 3kln_A*
Probab=99.80 E-value=5.3e-20 Score=150.30 Aligned_cols=121 Identities=9% Similarity=0.056 Sum_probs=102.4
Q ss_pred CCCcEEEEEeCCHHHHHHHHHHHhh-cCCEEEE-ECCHHHHHHH-hhhhhhhhccCCCCCcccEEEEcCCCCCCCHHHHH
Q 026776 27 TEEVHVLAVDDSFVDRKVIERLLTI-SSCKVTA-VDSGRRALQF-LGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELL 103 (233)
Q Consensus 27 ~~~~~ILIVddd~~~~~~l~~~L~~-~g~~v~~-a~~~~~al~~-l~~~~~~~~~~~~~~~~DlvllD~~mp~~~g~~ll 103 (233)
...++||||||++..+..++.+|+. .||.+.. +.++.+++.. + ....||+||+|+.||+++|++++
T Consensus 5 ~~~~~IlivdD~~~~~~~l~~~L~~~~~~~v~~~~~~~~~~~~~~~-----------~~~~~dlvllD~~mp~~~G~~~~ 73 (225)
T 3klo_A 5 ENKLNVRMLSDVCMQSRLLKEALESKLPLALEITPFSELWLEENKP-----------ESRSIQMLVIDYSRISDDVLTDY 73 (225)
T ss_dssp CSSEEEEEESCCSHHHHHHHHHHHHHSSEEEEEECGGGHHHHTTCS-----------GGGGCCEEEEEGGGCCHHHHHHH
T ss_pred CCceEEEEEcCcHHHHHHHHHHHhhCCCceEEEEeCCcHHHHHHHh-----------hccCCCEEEEeCCCCCCCHHHHH
Confidence 4578999999999999999999985 6888755 4555555543 3 35579999999999999999999
Q ss_pred HHHhc-cCCCCCCcEEEEeCCCcHHHHHHHHHcCCceEEeCCCCHHHHHHHHHHHhhh
Q 026776 104 KKIKD-SSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVKLSDVKRIKDYLTRD 160 (233)
Q Consensus 104 ~~Lr~-~~~~~~~piIvlt~~~~~~~~~~al~~Ga~dyL~KP~~~~eL~~~~~~l~~~ 160 (233)
++||+ ..+ .+|||++|+..+......+++.|+++||.||++.++|...++.+.+.
T Consensus 74 ~~lr~~~~~--~~~ii~lt~~~~~~~~~~~~~~Ga~~~l~Kp~~~~~L~~~i~~~~~~ 129 (225)
T 3klo_A 74 SSFKHISCP--DAKEVIINCPQDIEHKLLFKWNNLAGVFYIDDDMDTLIKGMSKILQD 129 (225)
T ss_dssp HHHHHHHCT--TCEEEEEEECTTCCHHHHTTSTTEEEEEETTCCHHHHHHHHHHHHTT
T ss_pred HHHHHhhCC--CCcEEEEECCcchhHHHHHHHhCCCEEEecCCCHHHHHHHHHHHHCC
Confidence 99998 555 89999999998877888999999999999999999998877776553
No 92
>2oqr_A Sensory transduction protein REGX3; response regulator, winged-helix-turn-helix, DNA-binding, 3D swapping, two component system; 2.03A {Mycobacterium tuberculosis H37RV}
Probab=99.80 E-value=6.4e-19 Score=143.80 Aligned_cols=117 Identities=24% Similarity=0.375 Sum_probs=106.9
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhcCCEEEEECCHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCCCCCHHHHHHHHhcc
Q 026776 30 VHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKKIKDS 109 (233)
Q Consensus 30 ~~ILIVddd~~~~~~l~~~L~~~g~~v~~a~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp~~~g~~ll~~Lr~~ 109 (233)
++||||||++..+..+..+|+..||.|..+.++.++++.+. ...||+||+|+.||+++|+++++.|++.
T Consensus 5 ~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~~~-----------~~~~dlvllD~~l~~~~g~~~~~~l~~~ 73 (230)
T 2oqr_A 5 TSVLIVEDEESLADPLAFLLRKEGFEATVVTDGPAALAEFD-----------RAGADIVLLDLMLPGMSGTDVCKQLRAR 73 (230)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHTTCEEEEECSHHHHHHHHH-----------HHCCSEEEEESSCSSSCHHHHHHHHHHH
T ss_pred CeEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHh-----------ccCCCEEEEECCCCCCCHHHHHHHHHcC
Confidence 68999999999999999999999999999999999999883 3469999999999999999999999985
Q ss_pred CCCCCCcEEEEeCCCcHHHHHHHHHcCCceEEeCCCCHHHHHHHHHHHhhh
Q 026776 110 SALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVKLSDVKRIKDYLTRD 160 (233)
Q Consensus 110 ~~~~~~piIvlt~~~~~~~~~~al~~Ga~dyL~KP~~~~eL~~~~~~l~~~ 160 (233)
+ .+|||++|+..+......+++.|+++||.||++.++|...++.+.+.
T Consensus 74 -~--~~~ii~lt~~~~~~~~~~~~~~ga~~~l~Kp~~~~~l~~~i~~~~~~ 121 (230)
T 2oqr_A 74 -S--SVPVIMVTARDSEIDKVVGLELGADDYVTKPYSARELIARIRAVLRR 121 (230)
T ss_dssp -C--SCSEEEEECCHHHHHHHHHHHHCCSCCCCSSCCHHHHHHHHHHHHTT
T ss_pred -C--CCCEEEEeCCCcHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHhh
Confidence 3 89999999998888889999999999999999999998877766553
No 93
>3bre_A Probable two-component response regulator; protein-nucleotide complex, signaling protein; HET: C2E; 2.40A {Pseudomonas aeruginosa} PDB: 3i5a_A*
Probab=99.79 E-value=5.6e-19 Score=153.54 Aligned_cols=119 Identities=24% Similarity=0.392 Sum_probs=105.2
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHh-hcCCEEEEECCHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCCCCCHHHHHHHH
Q 026776 28 EEVHVLAVDDSFVDRKVIERLLT-ISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKKI 106 (233)
Q Consensus 28 ~~~~ILIVddd~~~~~~l~~~L~-~~g~~v~~a~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp~~~g~~ll~~L 106 (233)
...+||||||++..+..+..+|. ..||.|..+.++.+|++.+. ...||+||+|+.||+++|+++++.|
T Consensus 17 ~~~~ilivdD~~~~~~~l~~~l~~~~~~~v~~~~~~~~al~~~~-----------~~~~dlvl~D~~mp~~~G~~~~~~l 85 (358)
T 3bre_A 17 GAVMVLLVDDQAMIGEAVRRSLASEAGIDFHFCSDPQQAVAVAN-----------QIKPTVILQDLVMPGVDGLTLLAAY 85 (358)
T ss_dssp -CEEEEEECSCTTHHHHHHTTSSSCTTEEEEEECCHHHHHHHHH-----------HHCCSEEEEESBCSSSBHHHHHHHH
T ss_pred cCceEEEEECCHHHHHHHHHHHHhccCcEEEEeCCHHHHHHHHH-----------hCCCCEEEEeCCCCCCCHHHHHHHH
Confidence 35789999999999999999996 46899999999999999983 4469999999999999999999999
Q ss_pred hccCCCCCCcEEEEeCCCcHHHHHHHHHcCCceEEeCCCCHHHHHHHHHHH
Q 026776 107 KDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVKLSDVKRIKDYL 157 (233)
Q Consensus 107 r~~~~~~~~piIvlt~~~~~~~~~~al~~Ga~dyL~KP~~~~eL~~~~~~l 157 (233)
|+....+.+|||++|+..+.....++++.|+++||.||++.++|...+..+
T Consensus 86 ~~~~~~~~~~ii~~s~~~~~~~~~~a~~~Ga~~~l~Kp~~~~~l~~~v~~~ 136 (358)
T 3bre_A 86 RGNPATRDIPIIVLSTKEEPTVKSAAFAAGANDYLVKLPDAIELVARIRYH 136 (358)
T ss_dssp TTSTTTTTSCEEEEESSCCHHHHHHHHHTTCSEEEESCCCHHHHHHHHHHH
T ss_pred hcCcccCCCcEEEEeCCCCHHHHHHHHhcChheEeeccCCHHHHHHHHHHH
Confidence 986545589999999999999999999999999999999999986655543
No 94
>3c97_A Signal transduction histidine kinase; structural genomics, signaling, PSI-2, protein structure initiative; 1.70A {Aspergillus oryzae RIB40}
Probab=99.79 E-value=4.9e-19 Score=133.52 Aligned_cols=117 Identities=21% Similarity=0.351 Sum_probs=99.3
Q ss_pred CcEEEEEeCCHHHHHHHHHHHhhcCCEEEEECCHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCCCCCHHHHHHHHhc
Q 026776 29 EVHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKKIKD 108 (233)
Q Consensus 29 ~~~ILIVddd~~~~~~l~~~L~~~g~~v~~a~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp~~~g~~ll~~Lr~ 108 (233)
.++||||||++..+..+..+|+..|+.+..+.++.++++.+ ....||+||+|+.||+++|+++++.|++
T Consensus 10 ~~~iLivdd~~~~~~~l~~~L~~~~~~v~~~~~~~~al~~l-----------~~~~~dlvllD~~lp~~~g~~~~~~l~~ 78 (140)
T 3c97_A 10 PLSVLIAEDNDICRLVAAKALEKCTNDITVVTNGLQALQAY-----------QNRQFDVIIMDIQMPVMDGLEAVSEIRN 78 (140)
T ss_dssp CCEEEEECCCHHHHHHHHHHHTTTCSEEEEESSHHHHHHHH-----------HHSCCSEEEECTTCCSSCHHHHHHHHHH
T ss_pred CceEEEEcCCHHHHHHHHHHHHHcCCceEEECCHHHHHHHH-----------hcCCCCEEEEeCCCCCCcHHHHHHHHHh
Confidence 46899999999999999999999999999999999999988 3456999999999999999999999987
Q ss_pred cC---CCCCCcEEEEeCCCcHHHHHHHHHcCCceEEeCCCCHHHHHHHHHHHhh
Q 026776 109 SS---ALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVKLSDVKRIKDYLTR 159 (233)
Q Consensus 109 ~~---~~~~~piIvlt~~~~~~~~~~al~~Ga~dyL~KP~~~~eL~~~~~~l~~ 159 (233)
.. ..+.+++|++++........ ..|+++||.||++.++|...+..+.+
T Consensus 79 ~~~~~~~~~~~ii~~s~~~~~~~~~---~~g~~~~l~KP~~~~~L~~~i~~~~~ 129 (140)
T 3c97_A 79 YERTHNTKRASIIAITADTIDDDRP---GAELDEYVSKPLNPNQLRDVVLTCHS 129 (140)
T ss_dssp HHHHHTCCCCCCEEEESSCCSCCCC---CSSCSEEEESSCCHHHHHHHHHHHHC
T ss_pred hhhhcCCCceEEEEEeCccchhHHH---hCChhheEeCCCCHHHHHHHHHHHhC
Confidence 42 12378999998876443322 78999999999999999887776654
No 95
>2pln_A HP1043, response regulator; signaling protein; 1.80A {Helicobacter pylori} PDB: 2hqo_A
Probab=99.79 E-value=4.1e-18 Score=127.81 Aligned_cols=116 Identities=20% Similarity=0.282 Sum_probs=104.7
Q ss_pred CCCCcEEEEEeCCHHHHHHHHHHHhhcCCEEEEECCHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCCCCCHHHHHHH
Q 026776 26 DTEEVHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKK 105 (233)
Q Consensus 26 ~~~~~~ILIVddd~~~~~~l~~~L~~~g~~v~~a~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp~~~g~~ll~~ 105 (233)
.....+||||||++..+..+..+|+..||.+..+.++.++++.+ ....||+|| ||+++|+++++.
T Consensus 15 ~~~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l-----------~~~~~dlvi----~~~~~g~~~~~~ 79 (137)
T 2pln_A 15 PRGSMRVLLIEKNSVLGGEIEKGLNVKGFMADVTESLEDGEYLM-----------DIRNYDLVM----VSDKNALSFVSR 79 (137)
T ss_dssp CTTCSEEEEECSCHHHHHHHHHHHHHTTCEEEEESCHHHHHHHH-----------HHSCCSEEE----ECSTTHHHHHHH
T ss_pred CCCCCeEEEEeCCHHHHHHHHHHHHHcCcEEEEeCCHHHHHHHH-----------HcCCCCEEE----EcCccHHHHHHH
Confidence 35678999999999999999999999999999999999999988 345799999 899999999999
Q ss_pred HhccCCCC-CCcEEEEeCCCcHHHHHHHHHcCCceEEeCCC-CHHHHHHHHHHHhh
Q 026776 106 IKDSSALR-EIPVVIMSSENILARIDRCLEDGAEDFIVKPV-KLSDVKRIKDYLTR 159 (233)
Q Consensus 106 Lr~~~~~~-~~piIvlt~~~~~~~~~~al~~Ga~dyL~KP~-~~~eL~~~~~~l~~ 159 (233)
|++. . .+|||++++..+.....++++.|+++||.||+ +.++|...+..+.+
T Consensus 80 l~~~---~~~~~ii~ls~~~~~~~~~~~~~~g~~~~l~kP~~~~~~l~~~i~~~~~ 132 (137)
T 2pln_A 80 IKEK---HSSIVVLVSSDNPTSEEEVHAFEQGADDYIAKPYRSIKALVARIEARLR 132 (137)
T ss_dssp HHHH---STTSEEEEEESSCCHHHHHHHHHTTCSEEEESSCSCHHHHHHHHHHHTC
T ss_pred HHhc---CCCccEEEEeCCCCHHHHHHHHHcCCceeeeCCCCCHHHHHHHHHHHHh
Confidence 9986 4 78999999999989999999999999999999 99999877766543
No 96
>2j48_A Two-component sensor kinase; pseudo-receiver, circadian clock, transferase, response regulator, histidine protein kinase; NMR {Synechococcus elongatus}
Probab=99.79 E-value=8.3e-19 Score=127.08 Aligned_cols=113 Identities=21% Similarity=0.239 Sum_probs=100.9
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhcCCEEEEECCHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCCCCCHHHHHHHHhcc
Q 026776 30 VHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKKIKDS 109 (233)
Q Consensus 30 ~~ILIVddd~~~~~~l~~~L~~~g~~v~~a~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp~~~g~~ll~~Lr~~ 109 (233)
.+||||||++..+..+...|+..||.+..+.++.++++.+. ...||+||+|+.+++++|+++++.+++.
T Consensus 2 ~~iliv~~~~~~~~~l~~~l~~~g~~v~~~~~~~~~~~~l~-----------~~~~dlii~d~~~~~~~~~~~~~~l~~~ 70 (119)
T 2j48_A 2 GHILLLEEEDEAATVVCEMLTAAGFKVIWLVDGSTALDQLD-----------LLQPIVILMAWPPPDQSCLLLLQHLREH 70 (119)
T ss_dssp CEEEEECCCHHHHHHHHHHHHHTTCEEEEESCHHHHHHHHH-----------HHCCSEEEEECSTTCCTHHHHHHHHHHT
T ss_pred CEEEEEeCCHHHHHHHHHHHHhCCcEEEEecCHHHHHHHHH-----------hcCCCEEEEecCCCCCCHHHHHHHHHhc
Confidence 58999999999999999999999999999999999999883 4469999999999999999999999987
Q ss_pred CCCCCCcEEEEeCCCcHHHHHHHHHcCCceEEeCCCCHHHHHHHHHH
Q 026776 110 SALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVKLSDVKRIKDY 156 (233)
Q Consensus 110 ~~~~~~piIvlt~~~~~~~~~~al~~Ga~dyL~KP~~~~eL~~~~~~ 156 (233)
.....+|+|+++...+.. .+++.|+++|+.||++.++|...+..
T Consensus 71 ~~~~~~~ii~~~~~~~~~---~~~~~g~~~~l~kp~~~~~l~~~l~~ 114 (119)
T 2j48_A 71 QADPHPPLVLFLGEPPVD---PLLTAQASAILSKPLDPQLLLTTLQG 114 (119)
T ss_dssp CCCSSCCCEEEESSCCSS---HHHHHHCSEECSSCSTTHHHHHHHHT
T ss_pred cccCCCCEEEEeCCCCch---hhhhcCHHHhccCCCCHHHHHHHHHH
Confidence 644589999999887654 88999999999999999998776654
No 97
>2gwr_A DNA-binding response regulator MTRA; two-component regulatory system, transcription regulation, phosphorylation, OMPR family; 2.10A {Mycobacterium tuberculosis} PDB: 3nhz_A
Probab=99.79 E-value=8e-19 Score=144.44 Aligned_cols=118 Identities=25% Similarity=0.439 Sum_probs=106.7
Q ss_pred CcEEEEEeCCHHHHHHHHHHHhhcCCEEEEECCHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCCCCCHHHHHHHHhc
Q 026776 29 EVHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKKIKD 108 (233)
Q Consensus 29 ~~~ILIVddd~~~~~~l~~~L~~~g~~v~~a~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp~~~g~~ll~~Lr~ 108 (233)
+++||||||++..+..+..+|+..||.|..+.++.++++.+. ...||+||+|+.||+++|+++++.|++
T Consensus 5 ~~~ILivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l~-----------~~~~dlvilD~~l~~~~g~~~~~~lr~ 73 (238)
T 2gwr_A 5 RQRILVVDDDASLAEMLTIVLRGEGFDTAVIGDGTQALTAVR-----------ELRPDLVLLDLMLPGMNGIDVCRVLRA 73 (238)
T ss_dssp CCEEEEECSCHHHHHHHHHHHHHTTCEEEEECCGGGHHHHHH-----------HHCCSEEEEESSCSSSCHHHHHHHHHT
T ss_pred cCeEEEEeCCHHHHHHHHHHHHHCCCEEEEECCHHHHHHHHH-----------hCCCCEEEEeCCCCCCCHHHHHHHHHh
Confidence 368999999999999999999999999999999999999883 446999999999999999999999997
Q ss_pred cCCCCCCcEEEEeCCCcHHHHHHHHHcCCceEEeCCCCHHHHHHHHHHHhhh
Q 026776 109 SSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVKLSDVKRIKDYLTRD 160 (233)
Q Consensus 109 ~~~~~~~piIvlt~~~~~~~~~~al~~Ga~dyL~KP~~~~eL~~~~~~l~~~ 160 (233)
.. .+|||++|+..+......+++.|+++||.||++.++|...+..+.+.
T Consensus 74 ~~---~~~ii~lt~~~~~~~~~~~~~~Ga~~~l~Kp~~~~~L~~~i~~~~~~ 122 (238)
T 2gwr_A 74 DS---GVPIVMLTAKTDTVDVVLGLESGADDYIMKPFKPKELVARVRARLRR 122 (238)
T ss_dssp TC---CCCEEEEEETTCCSCHHHHHHTTCCEEEEESCCHHHHHHHHHHHCCC
T ss_pred CC---CCcEEEEeCCCCHHHHHHHHHCCCCEEEeCCCCHHHHHHHHHHHHhh
Confidence 53 78999999998888888999999999999999999998877766543
No 98
>3c3w_A Two component transcriptional regulatory protein; response regulator, two-component regulatory system, DNA-BIN protein; 2.20A {Mycobacterium tuberculosis}
Probab=99.78 E-value=1.6e-19 Score=147.65 Aligned_cols=118 Identities=22% Similarity=0.278 Sum_probs=106.1
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhcC-CEE-EEECCHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCCCCCHHHHHHHHh
Q 026776 30 VHVLAVDDSFVDRKVIERLLTISS-CKV-TAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKKIK 107 (233)
Q Consensus 30 ~~ILIVddd~~~~~~l~~~L~~~g-~~v-~~a~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp~~~g~~ll~~Lr 107 (233)
++||||||++..+..+..+|...| |.+ ..+.++.++++.+. ...||+||+|+.||+++|+++++.|+
T Consensus 2 ~~ILivdd~~~~~~~l~~~L~~~~~~~vv~~~~~~~~al~~l~-----------~~~~dlvllD~~lp~~~g~~~~~~lr 70 (225)
T 3c3w_A 2 VKVFLVDDHEVVRRGLVDLLGADPELDVVGEAGSVAEAMARVP-----------AARPDVAVLDVRLPDGNGIELCRDLL 70 (225)
T ss_dssp EEEEEECSCHHHHHHHHHHHHTCTTEEEEEEESSHHHHHHHHH-----------HHCCSEEEECSEETTEEHHHHHHHHH
T ss_pred cEEEEEcCCHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHh-----------hcCCCEEEEeCCCCCCCHHHHHHHHH
Confidence 689999999999999999999886 874 47999999999883 44699999999999999999999999
Q ss_pred ccCCCCCCcEEEEeCCCcHHHHHHHHHcCCceEEeCCCCHHHHHHHHHHHhhh
Q 026776 108 DSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVKLSDVKRIKDYLTRD 160 (233)
Q Consensus 108 ~~~~~~~~piIvlt~~~~~~~~~~al~~Ga~dyL~KP~~~~eL~~~~~~l~~~ 160 (233)
+..+ .+|||++|+..+.....++++.|+++||.||++.++|...++.+.+.
T Consensus 71 ~~~~--~~~ii~lt~~~~~~~~~~~~~~Ga~~~l~Kp~~~~~L~~~i~~~~~~ 121 (225)
T 3c3w_A 71 SRMP--DLRCLILTSYTSDEAMLDAILAGASGYVVKDIKGMELARAVKDVGAG 121 (225)
T ss_dssp HHCT--TCEEEEGGGSSSHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhCC--CCcEEEEECCCCHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHcC
Confidence 8755 89999999999999999999999999999999999998777766554
No 99
>3t8y_A CHEB, chemotaxis response regulator protein-glutamate methylesterase; CHEA, hydrolase; 1.90A {Thermotoga maritima}
Probab=99.78 E-value=2.9e-18 Score=133.29 Aligned_cols=110 Identities=31% Similarity=0.359 Sum_probs=93.1
Q ss_pred CCCcEEEEEeCCHHHHHHHHHHHhhcC-C-EEEEECCHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCCCCCHHHHHH
Q 026776 27 TEEVHVLAVDDSFVDRKVIERLLTISS-C-KVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLK 104 (233)
Q Consensus 27 ~~~~~ILIVddd~~~~~~l~~~L~~~g-~-~v~~a~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp~~~g~~ll~ 104 (233)
.+.++||||||++..+..++.+|+..| + .+..+.++.++++.+. ...||+||+|+.||+++|+++++
T Consensus 23 ~~~~~ILivdd~~~~~~~l~~~L~~~~~~~~v~~~~~~~~al~~l~-----------~~~~dlvilD~~l~~~~g~~l~~ 91 (164)
T 3t8y_A 23 DRVIRVLVVDDSAFMRMVLKDIIDSQPDMKVVGFAKDGLEAVEKAI-----------ELKPDVITMDIEMPNLNGIEALK 91 (164)
T ss_dssp -CCEEEEEECSCHHHHHHHHHHHHTSTTEEEEEEESSHHHHHHHHH-----------HHCCSEEEECSSCSSSCHHHHHH
T ss_pred cCccEEEEEcCCHHHHHHHHHHHhcCCCeEEEEecCCHHHHHHHhc-----------cCCCCEEEEeCCCCCCCHHHHHH
Confidence 356899999999999999999999875 3 4457999999999883 45699999999999999999999
Q ss_pred HHhccCCCCCCcEEEEeCCCcHH--HHHHHHHcCCceEEeCCCCHHHH
Q 026776 105 KIKDSSALREIPVVIMSSENILA--RIDRCLEDGAEDFIVKPVKLSDV 150 (233)
Q Consensus 105 ~Lr~~~~~~~~piIvlt~~~~~~--~~~~al~~Ga~dyL~KP~~~~eL 150 (233)
.|++.. .+++|+++...+.. ...++++.|+++||.||++.++|
T Consensus 92 ~lr~~~---~~~ii~~s~~~~~~~~~~~~~~~~ga~~~l~KP~~~~~l 136 (164)
T 3t8y_A 92 LIMKKA---PTRVIMVSSLTEEGAAITIEALRNGAVDFITKPHGSISL 136 (164)
T ss_dssp HHHHHS---CCEEEEEESSCCTTCHHHHHHHHTTCCEEEECSSSSSCG
T ss_pred HHHhcC---CceEEEEecCCccchHHHHHHHHcCcCEEEeCCCCHHHH
Confidence 999865 37899999876543 66789999999999999994443
No 100
>3sy8_A ROCR; TIM barrel phosphodiesterase-A, transcription regulator; HET: EPE; 2.50A {Pseudomonas aeruginosa}
Probab=99.78 E-value=5.8e-19 Score=156.54 Aligned_cols=120 Identities=22% Similarity=0.296 Sum_probs=104.1
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHhh-cCCEEEEECCHHHHHHHhhhhhhhhccCCCC-CcccEEEEcCCCCCCCHHHHHHH
Q 026776 28 EEVHVLAVDDSFVDRKVIERLLTI-SSCKVTAVDSGRRALQFLGLDEEQSINGFDG-LKVDLIITDYCMPGMTGYELLKK 105 (233)
Q Consensus 28 ~~~~ILIVddd~~~~~~l~~~L~~-~g~~v~~a~~~~~al~~l~~~~~~~~~~~~~-~~~DlvllD~~mp~~~g~~ll~~ 105 (233)
++++||||||++..+..+..+|+. .|+.|..+.++.+|++.+. . ..||+||+|+.||++||++++++
T Consensus 2 ~~~~ILivDD~~~~~~~l~~~L~~~~~~~v~~a~~g~eal~~l~-----------~~~~~DlvllDi~mP~~dG~ell~~ 70 (400)
T 3sy8_A 2 NDLNVLVLEDEPFQRLVAVTALKKVVPGSILEAADGKEAVAILE-----------SCGHVDIAICDLQMSGMDGLAFLRH 70 (400)
T ss_dssp CCEEEEEECSSHHHHHHHHHHHHHHCSEEEEEESSHHHHHHHHH-----------HHSCEEEEEECSSCSSSCHHHHHHH
T ss_pred CCceEEEEcCCHHHHHHHHHHHHhcCCcEEEEecCHHHHHHHHh-----------hCCCCCEEEEeCCCCCCCHHHHHHH
Confidence 358999999999999999999988 5789999999999999983 3 36999999999999999999999
Q ss_pred HhccCCCCCCcEEEEeCCCcH-----HHHHHHHHcCCceEEeCCCCHHHHHHHHHHHhhh
Q 026776 106 IKDSSALREIPVVIMSSENIL-----ARIDRCLEDGAEDFIVKPVKLSDVKRIKDYLTRD 160 (233)
Q Consensus 106 Lr~~~~~~~~piIvlt~~~~~-----~~~~~al~~Ga~dyL~KP~~~~eL~~~~~~l~~~ 160 (233)
|++..+ ..+||++|+.... ....++++.|+++||.||++.++|...+..+.+.
T Consensus 71 l~~~~~--~~~ii~~s~~~~~~~~~~~~~~~a~~~ga~~yl~KP~~~~~L~~~i~~~~~~ 128 (400)
T 3sy8_A 71 ASLSGK--VHSVILSSEVDPILRQATISMIECLGLNFLGDLGKPFSLERITALLTRYNAR 128 (400)
T ss_dssp HHHHTC--EEEEEESCCCCGGGHHHHHHHHHTTTCEEEEECCSSCCHHHHHHHHHHHHHH
T ss_pred HHhcCC--CceEEEEcCchHHHHHHHHHHHHHcCCeeccCcCCCcCHHHHHHHHHHHHHh
Confidence 998764 6777777777655 5677889999999999999999998887776554
No 101
>1dc7_A NTRC, nitrogen regulation protein; receiver domain, phosphorylation, signal transduction, conformational rearrangement; NMR {Salmonella typhimurium} SCOP: c.23.1.1 PDB: 1j56_A 1krw_A 1krx_A 1ntr_A 1dc8_A*
Probab=99.78 E-value=1.4e-20 Score=138.22 Aligned_cols=119 Identities=29% Similarity=0.444 Sum_probs=106.2
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHhhcCCEEEEECCHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCCCCCHHHHHHHHh
Q 026776 28 EEVHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKKIK 107 (233)
Q Consensus 28 ~~~~ILIVddd~~~~~~l~~~L~~~g~~v~~a~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp~~~g~~ll~~Lr 107 (233)
...+|||+||++..+..+...|...||.+..+.++.++++.+ ....||+||+|+.||+++|+++++.|+
T Consensus 2 ~~~~ilivdd~~~~~~~l~~~l~~~~~~v~~~~~~~~~~~~~-----------~~~~~dlvi~d~~~~~~~g~~~~~~l~ 70 (124)
T 1dc7_A 2 QRGIVWVVDDDSSIRWVLERALAGAGLTCTTFENGNEVLAAL-----------ASKTPDVLLSDIRMPGMDGLALLKQIK 70 (124)
T ss_dssp CCCCCEEECSSSSHHHHHHHHHTTTTCCCEECCCTTHHHHHS-----------SSCCCSCEEECSCSSHHHHCSTHHHHH
T ss_pred CccEEEEEeCCHHHHHHHHHHHHhCCcEEEEeCCHHHHHHHH-----------hcCCCCEEEEeeecCCCCHHHHHHHHH
Confidence 356799999999999999999999999999999999999988 456799999999999999999999999
Q ss_pred ccCCCCCCcEEEEeCCCcHHHHHHHHHcCCceEEeCCCCHHHHHHHHHHHhh
Q 026776 108 DSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVKLSDVKRIKDYLTR 159 (233)
Q Consensus 108 ~~~~~~~~piIvlt~~~~~~~~~~al~~Ga~dyL~KP~~~~eL~~~~~~l~~ 159 (233)
+..+ .+|+|++++..+.....++++.|+++|+.||++.++|...++.+.+
T Consensus 71 ~~~~--~~~ii~~s~~~~~~~~~~~~~~g~~~~l~kp~~~~~l~~~i~~~~~ 120 (124)
T 1dc7_A 71 QRHP--MLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAIS 120 (124)
T ss_dssp HHCT--TSCCCCBCCSTTSTTTTSSCTTCCCCCBCSSCCHHHHHHHHHHHHH
T ss_pred hhCC--CCCEEEEecCCCHHHHHHHHhcCcceEeeCCCCHHHHHHHHHHHHH
Confidence 8654 8899999998877778889999999999999999999877766543
No 102
>1p2f_A Response regulator; DRRB, OMPR/PHOB, transcription; HET: MSE; 1.80A {Thermotoga maritima} SCOP: a.4.6.1 c.23.1.1 PDB: 3nns_A*
Probab=99.78 E-value=4.5e-18 Score=137.97 Aligned_cols=115 Identities=20% Similarity=0.267 Sum_probs=104.9
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhcCCEEEEECCHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCCCCCHHHHHHHHhcc
Q 026776 30 VHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKKIKDS 109 (233)
Q Consensus 30 ~~ILIVddd~~~~~~l~~~L~~~g~~v~~a~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp~~~g~~ll~~Lr~~ 109 (233)
++||||||++..+..+..+|+..| .+..+.++.++++.+ ..||+||+|+.||+++|+++++.|++.
T Consensus 3 ~~ilivdd~~~~~~~l~~~L~~~~-~v~~~~~~~~al~~~-------------~~~dlvllD~~lp~~~g~~~~~~lr~~ 68 (220)
T 1p2f_A 3 WKIAVVDDDKNILKKVSEKLQQLG-RVKTFLTGEDFLNDE-------------EAFHVVVLDVMLPDYSGYEICRMIKET 68 (220)
T ss_dssp EEEEEECSCHHHHHHHHHHHTTTE-EEEEESSHHHHHHCC-------------SCCSEEEEESBCSSSBHHHHHHHHHHH
T ss_pred ceEEEEeCCHHHHHHHHHHHHhCC-CEEEECCHHHHHHhc-------------CCCCEEEEeCCCCCCCHHHHHHHHHhc
Confidence 689999999999999999999888 899999999998753 469999999999999999999999987
Q ss_pred CCCCCCcEEEEeCCCcHHHHHHHHHcCCceEEeCCCCHHHHHHHHHHHhhh
Q 026776 110 SALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVKLSDVKRIKDYLTRD 160 (233)
Q Consensus 110 ~~~~~~piIvlt~~~~~~~~~~al~~Ga~dyL~KP~~~~eL~~~~~~l~~~ 160 (233)
.+ .+|+|++|+..+.....++++.|+++||.||++.++|...+..+.+.
T Consensus 69 ~~--~~~ii~lt~~~~~~~~~~~~~~ga~~~l~Kp~~~~~L~~~i~~~~~~ 117 (220)
T 1p2f_A 69 RP--ETWVILLTLLSDDESVLKGFEAGADDYVTKPFNPEILLARVKRFLER 117 (220)
T ss_dssp CT--TSEEEEEESCCSHHHHHHHHHHTCSEEEESSCCHHHHHHHHHHHHHH
T ss_pred CC--CCcEEEEEcCCCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHcc
Confidence 64 89999999999999999999999999999999999998877766554
No 103
>2b4a_A BH3024; flavodoxin-like fold, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 2.42A {Bacillus halodurans} SCOP: c.23.1.1
Probab=99.77 E-value=1.5e-18 Score=130.35 Aligned_cols=116 Identities=21% Similarity=0.297 Sum_probs=98.8
Q ss_pred CCCCcEEEEEeCCHHHHHHHHHHHhhcCCEEEEECCHHHHHHHhhhhhhhhccCCCC-CcccEEEEcCCCCCCCHHHHHH
Q 026776 26 DTEEVHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDG-LKVDLIITDYCMPGMTGYELLK 104 (233)
Q Consensus 26 ~~~~~~ILIVddd~~~~~~l~~~L~~~g~~v~~a~~~~~al~~l~~~~~~~~~~~~~-~~~DlvllD~~mp~~~g~~ll~ 104 (233)
.....+||||||++..+..+..+|+..||.+..+.++.++++.+ .. ..||+||+|+.||+++|+++++
T Consensus 12 ~~~~~~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l-----------~~~~~~dlvilD~~l~~~~g~~~~~ 80 (138)
T 2b4a_A 12 HMQPFRVTLVEDEPSHATLIQYHLNQLGAEVTVHPSGSAFFQHR-----------SQLSTCDLLIVSDQLVDLSIFSLLD 80 (138)
T ss_dssp --CCCEEEEECSCHHHHHHHHHHHHHTTCEEEEESSHHHHHHTG-----------GGGGSCSEEEEETTCTTSCHHHHHH
T ss_pred CCCCCeEEEECCCHHHHHHHHHHHHHcCCEEEEeCCHHHHHHHH-----------HhCCCCCEEEEeCCCCCCCHHHHHH
Confidence 34678999999999999999999999999999999999999988 44 5799999999999999999999
Q ss_pred HHhccCCCCCCcEEEEe-CCCcHHHHHHHHHcCCceEEeCCCCHHHHHHHHHHHh
Q 026776 105 KIKDSSALREIPVVIMS-SENILARIDRCLEDGAEDFIVKPVKLSDVKRIKDYLT 158 (233)
Q Consensus 105 ~Lr~~~~~~~~piIvlt-~~~~~~~~~~al~~Ga~dyL~KP~~~~eL~~~~~~l~ 158 (233)
.|++..+ .+|+|+++ +..+... .+++ +++|+.||++.++|...++.+.
T Consensus 81 ~l~~~~~--~~~ii~ls~~~~~~~~-~~~~---~~~~l~KP~~~~~L~~~i~~~~ 129 (138)
T 2b4a_A 81 IVKEQTK--QPSVLILTTGRHELIE-SSEH---NLSYLQKPFAISELRAAIDYHK 129 (138)
T ss_dssp HHTTSSS--CCEEEEEESCC--CCC-CSSS---CEEEEESSCCHHHHHHHHHHTC
T ss_pred HHHhhCC--CCCEEEEECCCCCHHH-HHHH---HHheeeCCCCHHHHHHHHHHHH
Confidence 9998644 89999999 7765554 5555 9999999999999987776544
No 104
>1qo0_D AMIR; binding protein, gene regulator, receptor; 2.25A {Pseudomonas aeruginosa} SCOP: c.23.1.3
Probab=99.76 E-value=3.7e-18 Score=136.17 Aligned_cols=113 Identities=14% Similarity=0.136 Sum_probs=98.3
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHhhcCCEEEEECCHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCCCCCHHHHHHHHh
Q 026776 28 EEVHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKKIK 107 (233)
Q Consensus 28 ~~~~ILIVddd~~~~~~l~~~L~~~g~~v~~a~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp~~~g~~ll~~Lr 107 (233)
+.++||||||++..+..+..+|...||.+..+.++.+++ ...||+||+|+.||+++|+ +++.++
T Consensus 11 ~~~~iLivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al---------------~~~~dlvl~D~~mp~~~g~-l~~~~~ 74 (196)
T 1qo0_D 11 RELQVLVLNPPGEVSDALVLQLIRIGCSVRQCWPPPEAF---------------DVPVDVVFTSIFQNRHHDE-IAALLA 74 (196)
T ss_dssp GGCEEEEESCTTHHHHHHHHHHHHHTCEEEEECSCCSSC---------------SSCCSEEEEECCSSTHHHH-HHHHHH
T ss_pred cCCeEEEEcCChhHHHHHHHHHHHcCCeEEEecCchhhC---------------CCCCCEEEEeCCCCccchH-HHHHHh
Confidence 468999999999999999999999999998887765543 2469999999999999999 999998
Q ss_pred ccCCCCCCcEEEEeCCCcHHHHHHHHHcCCceEEeCCCCHHHHHHHHHHHh
Q 026776 108 DSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVKLSDVKRIKDYLT 158 (233)
Q Consensus 108 ~~~~~~~~piIvlt~~~~~~~~~~al~~Ga~dyL~KP~~~~eL~~~~~~l~ 158 (233)
... +.+|||++|++.+.+...++++.|+++||.||++.++|...+..+.
T Consensus 75 ~~~--~~~~ii~lt~~~~~~~~~~a~~~ga~~~l~KP~~~~~L~~~l~~~~ 123 (196)
T 1qo0_D 75 AGT--PRTTLVALVEYESPAVLSQIIELECHGVITQPLDAHRVLPVLVSAR 123 (196)
T ss_dssp HSC--TTCEEEEEECCCSHHHHHHHHHHTCSEEEESSCCGGGHHHHHHHHH
T ss_pred ccC--CCCCEEEEEcCCChHHHHHHHHcCCCeeEecCcCHHHHHHHHHHHH
Confidence 764 3899999999999999999999999999999999999876665443
No 105
>2hqr_A Putative transcriptional regulator; phosporylation-independent response regulator, H. pylori, SY dimer, signaling protein; NMR {Helicobacter pylori}
Probab=99.75 E-value=2e-17 Score=134.43 Aligned_cols=114 Identities=20% Similarity=0.275 Sum_probs=104.0
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhcCCEEEEECCHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCCCCCHHHHHHHHhcc
Q 026776 30 VHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKKIKDS 109 (233)
Q Consensus 30 ~~ILIVddd~~~~~~l~~~L~~~g~~v~~a~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp~~~g~~ll~~Lr~~ 109 (233)
++||||||++..+..+..+|...||.|..+.++.++++.+ ....||+|| ||+++|+++++.|++.
T Consensus 1 m~ilivdd~~~~~~~l~~~L~~~g~~v~~~~~~~~al~~l-----------~~~~~dlvi----lp~~~g~~~~~~lr~~ 65 (223)
T 2hqr_A 1 MRVLLIEKNSVLGGEIEKGLNVKGFMADVTESLEDGEYLM-----------DIRNYDLVM----VSDKNALSFVSRIKEK 65 (223)
T ss_dssp CCEEEECSCHHHHHHHHHHHGGGTCCEEEESSHHHHHHHH-----------TTSCCSEEE----ECCTTHHHHHHHHHHH
T ss_pred CEEEEEcCCHHHHHHHHHHHHHCCcEEEEECCHHHHHHHH-----------hcCCCCEEE----eCCCCHHHHHHHHHhC
Confidence 4799999999999999999999999999999999999998 566799999 8999999999999987
Q ss_pred CCCCCCcEEEEeCCCcHHHHHHHHHcCCceEEeCCC-CHHHHHHHHHHHhhh
Q 026776 110 SALREIPVVIMSSENILARIDRCLEDGAEDFIVKPV-KLSDVKRIKDYLTRD 160 (233)
Q Consensus 110 ~~~~~~piIvlt~~~~~~~~~~al~~Ga~dyL~KP~-~~~eL~~~~~~l~~~ 160 (233)
. ..+|||++|+..+.....++++.|+++||.||+ +.++|...+..+.+.
T Consensus 66 ~--~~~~ii~lt~~~~~~~~~~~~~~Ga~~~l~Kp~~~~~~L~~~i~~~~~~ 115 (223)
T 2hqr_A 66 H--SSIVVLVSSDNPTSEEEVHAFEQGADDYIAKPYRSIKALVARIEARLRF 115 (223)
T ss_dssp C--TTSEEEEEESSCCHHHHHHHHHHTCSEEEETTCSCTHHHHHHHHHHTSS
T ss_pred C--CCCcEEEEECCCCHHHHHHHHHcCCCEEEECCCCCHHHHHHHHHHHhcc
Confidence 2 379999999999999999999999999999999 999998887776554
No 106
>1a2o_A CHEB methylesterase; bacterial chemotaxis, adaptation, serine hydrolase; 2.40A {Salmonella typhimurium} SCOP: c.23.1.1 c.40.1.1
Probab=99.73 E-value=5e-17 Score=141.87 Aligned_cols=106 Identities=29% Similarity=0.408 Sum_probs=93.8
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHhhc-CCE-EEEECCHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCCCCCHHHHHHH
Q 026776 28 EEVHVLAVDDSFVDRKVIERLLTIS-SCK-VTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKK 105 (233)
Q Consensus 28 ~~~~ILIVddd~~~~~~l~~~L~~~-g~~-v~~a~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp~~~g~~ll~~ 105 (233)
++++||||||++..+..+..+|+.. ||+ +..+.++.++++.+. ...||+||+|+.||+++|++++++
T Consensus 2 ~~~rVLIVDD~~~~r~~L~~~L~~~~g~~vv~~a~~~~eAl~~l~-----------~~~pDlVllDi~mp~~dGlell~~ 70 (349)
T 1a2o_A 2 SKIRVLSVDDSALMRQIMTEIINSHSDMEMVATAPDPLVARDLIK-----------KFNPDVLTLDVEMPRMDGLDFLEK 70 (349)
T ss_dssp CCEEEEEECSCHHHHHHHHHHHHTSTTEEEEEEESSHHHHHHHHH-----------HHCCSEEEEECCCSSSCHHHHHHH
T ss_pred CCCEEEEEECCHHHHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHh-----------ccCCCEEEEECCCCCCCHHHHHHH
Confidence 3589999999999999999999986 888 568999999999883 456999999999999999999999
Q ss_pred HhccCCCCCCcEEEEeCCCcH--HHHHHHHHcCCceEEeCCCCH
Q 026776 106 IKDSSALREIPVVIMSSENIL--ARIDRCLEDGAEDFIVKPVKL 147 (233)
Q Consensus 106 Lr~~~~~~~~piIvlt~~~~~--~~~~~al~~Ga~dyL~KP~~~ 147 (233)
|++.. .+|+|++|+..+. +...++++.|+++||.||++.
T Consensus 71 l~~~~---p~pVIvlS~~~~~~~~~~~~al~~Ga~d~l~KP~~~ 111 (349)
T 1a2o_A 71 LMRLR---PMPVVMVSSLTGKGSEVTLRALELGAIDFVTKPQLG 111 (349)
T ss_dssp HHHSS---CCCEEEEECCTHHHHHHHHHHHHHTCCEEEECSSSS
T ss_pred HHhcC---CCcEEEEECCCcccHHHHHHHHhCCceEEEECCCCc
Confidence 99864 3899999988765 447889999999999999983
No 107
>3luf_A Two-component system response regulator/ggdef domain protein; structural genomics, ASA_2441, PSI-2, protein structure initiative; HET: MSE; 1.76A {Aeromonas salmonicida} PDB: 3mf4_A*
Probab=99.72 E-value=1.7e-17 Score=138.93 Aligned_cols=103 Identities=20% Similarity=0.368 Sum_probs=86.6
Q ss_pred CcEEEEEeCCHHHHHHHHHHHhh-cCCEEEEECCHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCCCCCHHHHHHHHh
Q 026776 29 EVHVLAVDDSFVDRKVIERLLTI-SSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKKIK 107 (233)
Q Consensus 29 ~~~ILIVddd~~~~~~l~~~L~~-~g~~v~~a~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp~~~g~~ll~~Lr 107 (233)
+.+||||||++..++.+...|.. .|+.+..++. .+++..+ ....||+||+|+.||+++|+++++++|
T Consensus 4 ~~~ILiVdD~~~~~~~l~~~L~~~~~~~v~~~~~-~~~~~~~-----------~~~~~dlvllD~~mP~~~G~~~~~~lr 71 (259)
T 3luf_A 4 KQKILIVEDSMTIRRMLIQAIAQQTGLEIDAFDT-LEGARHC-----------QGDEYVVALVDLTLPDAPSGEAVKVLL 71 (259)
T ss_dssp CCEEEEECCCHHHHHHHHHHHHHHHCCEEEEESS-TGGGTTC-----------CTTTEEEEEEESCBTTBTTSHHHHHHH
T ss_pred CCeEEEEECCHHHHHHHHHHHHhcCCeEEEEeCh-HHHHHHh-----------hcCCCcEEEEeCCCCCCCHHHHHHHHH
Confidence 36899999999999999999976 4787765544 4444433 445799999999999999999999999
Q ss_pred ccCCCCCCcEEEEeCCCcHHHHHHHHHcCCceEEeCCCCH
Q 026776 108 DSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVKL 147 (233)
Q Consensus 108 ~~~~~~~~piIvlt~~~~~~~~~~al~~Ga~dyL~KP~~~ 147 (233)
+. .+|||++|++.+.+...+++++||++|+.||+..
T Consensus 72 ~~----~~pvi~lt~~~~~~~~~~a~~~Ga~dyl~Kp~~~ 107 (259)
T 3luf_A 72 ER----GLPVVILTADISEDKREAWLEAGVLDYVMKDSRH 107 (259)
T ss_dssp HT----TCCEEEEECC-CHHHHHHHHHTTCCEEEECSSHH
T ss_pred hC----CCCEEEEEccCCHHHHHHHHHCCCcEEEeCCchh
Confidence 74 5899999999999999999999999999999754
No 108
>2vyc_A Biodegradative arginine decarboxylase; pyridoxal phosphate, PLP-dependent E lyase, acid resistance; HET: LLP; 2.4A {Escherichia coli}
Probab=99.69 E-value=5.8e-17 Score=154.31 Aligned_cols=117 Identities=21% Similarity=0.316 Sum_probs=104.0
Q ss_pred cEEEEEeCCH-HH-------HHHHHHHHhhcCCEEEEECCHHHHHHHhhhhhhhhccCCCCC-cccEEEEcCCCCC----
Q 026776 30 VHVLAVDDSF-VD-------RKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGL-KVDLIITDYCMPG---- 96 (233)
Q Consensus 30 ~~ILIVddd~-~~-------~~~l~~~L~~~g~~v~~a~~~~~al~~l~~~~~~~~~~~~~~-~~DlvllD~~mp~---- 96 (233)
|+||||||+. .. ++.|...|+..||+|..+.++++++..+ ... .+|+||+|++||+
T Consensus 1 m~ILiVdDd~~~~~~~~~~~~~~L~~~L~~~g~~v~~a~~g~~al~~~-----------~~~~~~d~vilDi~lp~~~~~ 69 (755)
T 2vyc_A 1 MKVLIVESEFLHQDTWVGNAVERLADALSQQNVTVIKSTSFDDGFAIL-----------SSNEAIDCLMFSYQMEHPDEH 69 (755)
T ss_dssp CEEEEECCTTSTTSHHHHHHHHHHHHHHHHTTCEEEEESSHHHHHHHH-----------TTTCCCSEEEEECCCCSHHHH
T ss_pred CeEEEEeCCccccccccHHHHHHHHHHHHhCCCEEEEECCHHHHHHHH-----------hcCCCCcEEEEeCCCCccccc
Confidence 4899999999 88 9999999999999999999999999998 444 5999999999999
Q ss_pred CCHHHHHHHHhccCCCCCCcEEEEeCCCc-HHHHHHHHHcCCceEEeCCCCHHH-H-HHHHHHHhh
Q 026776 97 MTGYELLKKIKDSSALREIPVVIMSSENI-LARIDRCLEDGAEDFIVKPVKLSD-V-KRIKDYLTR 159 (233)
Q Consensus 97 ~~g~~ll~~Lr~~~~~~~~piIvlt~~~~-~~~~~~al~~Ga~dyL~KP~~~~e-L-~~~~~~l~~ 159 (233)
++|++++++||+... .+|||++|+... .+.....+..|+|||+.||++..+ | .++...++|
T Consensus 70 ~~G~~ll~~iR~~~~--~iPIi~lTa~~~~~~d~~~~l~~gaddyi~kpf~~~efl~~ri~a~~rr 133 (755)
T 2vyc_A 70 QNVRQLIGKLHERQQ--NVPVFLLGDREKALAAMDRDLLELVDEFAWILEDTADFIAGRAVAAMTR 133 (755)
T ss_dssp HHHHHHHHHHHHHST--TCCEEEEECHHHHHHTCSHHHHHHCSEEEETTTSCHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHhCC--CCCEEEEecCCcchhhccHhHhhcCCceEeCCCCCHHHHHHHHHHHHHH
Confidence 999999999999865 899999999877 778888999999999999999999 5 455555544
No 109
>1w25_A Stalked-cell differentiation controlling protein; two-component system, ggdef domain, cyclic dinucleotide, cyclic-digmp; HET: C2E; 2.70A {Caulobacter vibrioides} SCOP: c.23.1.1 c.23.1.1 d.58.29.2 PDB: 2v0n_A* 2wb4_A*
Probab=99.20 E-value=4.7e-10 Score=100.38 Aligned_cols=117 Identities=20% Similarity=0.281 Sum_probs=96.5
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHhhcCCEEEEECCHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCCCCCHHHHHHHHh
Q 026776 28 EEVHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKKIK 107 (233)
Q Consensus 28 ~~~~ILIVddd~~~~~~l~~~L~~~g~~v~~a~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp~~~g~~ll~~Lr 107 (233)
...+|+++||+......+...|.. .+.+....++.+++.. ....||++++|+.||+++|+++++.+|
T Consensus 151 ~~~~ilivdd~~~~~~~i~~~L~~-~~~~~~~~~~~~~~~~------------~~~~~dlil~D~~mp~~dG~~~~~~ir 217 (459)
T 1w25_A 151 LGGRVLIVDDNERQAQRVAAELGV-EHRPVIESDPEKAKIS------------AGGPVDLVIVNAAAKNFDGLRFTAALR 217 (459)
T ss_dssp CSCEEEEECSCHHHHHHHHHHHTT-TSEEEEECCHHHHHHH------------HHSSCSEEEEETTCSSSCHHHHHHHHH
T ss_pred CCCeEEEECCchhhHHHHHHHHhc-ccceeeccCHHHHhhh------------ccCCCCEEEEecCCCCCcHHHHHHHHH
Confidence 456899999999888888888754 4566777788777532 123589999999999999999999999
Q ss_pred ccCCCCCCcEEEEeCCCcHHHHHHHHHcCCceEEeCCCCHHHHHHHHHHH
Q 026776 108 DSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVKLSDVKRIKDYL 157 (233)
Q Consensus 108 ~~~~~~~~piIvlt~~~~~~~~~~al~~Ga~dyL~KP~~~~eL~~~~~~l 157 (233)
.......+|++++++.........+++.|+++|+.||+...++...+..+
T Consensus 218 ~~~~~~~~pii~lt~~~~~~~~~~~l~~Ga~d~~~kp~~~~~l~~~v~~~ 267 (459)
T 1w25_A 218 SEERTRQLPVLAMVDPDDRGRMVKALEIGVNDILSRPIDPQELSARVKTQ 267 (459)
T ss_dssp TSGGGTTCCEEEEECTTCHHHHHHHHHTTCCEEEESSCCHHHHHHHHHHH
T ss_pred hCccccCCcEEEEcCCCchHHHHHHHhccccccccCCCCHHHHHHHHHHH
Confidence 87666689999999999988889999999999999999999875444433
No 110
>3cwo_X Beta/alpha-barrel protein based on 1THF and 1TMY; XRAY, CHEY, HISF, half barrel, de novo protein; 3.10A {Thermotoga maritima} PDB: 2lle_A
Probab=99.13 E-value=2.5e-11 Score=98.62 Aligned_cols=88 Identities=26% Similarity=0.390 Sum_probs=70.3
Q ss_pred CEEEEECCHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCCCCCHHHHHHHHhccCCCCCCcEEEEeCCCcHHHHHHHH
Q 026776 54 CKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKKIKDSSALREIPVVIMSSENILARIDRCL 133 (233)
Q Consensus 54 ~~v~~a~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp~~~g~~ll~~Lr~~~~~~~~piIvlt~~~~~~~~~~al 133 (233)
+.|..+.++.++++.+. ...||+||+|+.||+++|+++++.||+..+ ..++++++.....+...+++
T Consensus 6 ~~v~~~~~~~~a~~~~~-----------~~~~dlvl~D~~~p~~~g~~~~~~l~~~~~--~~~i~vi~~~~~~~~~~~~~ 72 (237)
T 3cwo_X 6 LIVDDATNGREAVEKYK-----------ELKPDIVTMDITMPEMNGIDAIKEIMKIDP--NAKIIVCSAMGQQAMVIEAI 72 (237)
T ss_dssp EEEECCCSSSTTHHHHH-----------HHCCSCEEEECCSTTSSHHHHHHHHHHHSS--SCCEEEECCSSTHHHHHHHH
T ss_pred EEEEECCCHHHHHHHHH-----------hcCCCEEEEeCCCCCCCHHHHHHHHHHhCC--CCCEEEEECCCCHHHHHHHH
Confidence 45556788888888873 346999999999999999999999998655 55666666666678889999
Q ss_pred HcCCceEEeCC--CCHHHHHHHH
Q 026776 134 EDGAEDFIVKP--VKLSDVKRIK 154 (233)
Q Consensus 134 ~~Ga~dyL~KP--~~~~eL~~~~ 154 (233)
+.|+++|+.|| ++..++...+
T Consensus 73 ~~Ga~~~l~kp~~~~~~~l~~~i 95 (237)
T 3cwo_X 73 KAGAKDFIVNTAAVENPSLITQI 95 (237)
T ss_dssp HTTCCEEEESHHHHHCTHHHHHH
T ss_pred HCCHHheEeCCcccChHHHHHHH
Confidence 99999999999 6666665433
No 111
>3q7r_A Transcriptional regulatory protein; CHXR, receiver domain, transcription factor, OMPR, chlamydia transcription; 1.60A {Chlamydia trachomatis} PDB: 3q7s_A* 3q7t_A
Probab=97.73 E-value=0.00058 Score=47.80 Aligned_cols=107 Identities=17% Similarity=0.192 Sum_probs=82.2
Q ss_pred CcEEEEEeCCHHHHHHHHHHHhhcCCEEEEECCHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCCCCCHHHHHHHHhc
Q 026776 29 EVHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKKIKD 108 (233)
Q Consensus 29 ~~~ILIVddd~~~~~~l~~~L~~~g~~v~~a~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp~~~g~~ll~~Lr~ 108 (233)
+-.||+|..|-...-.+++++....|+++..... . .+...|+|+|.+-+-.. .+..
T Consensus 12 ~~~iL~VtEd~~ls~QlKel~~~~eY~~~is~~~-------~----------~e~~AdlIfCEYlLLPe-------~ifS 67 (121)
T 3q7r_A 12 PKHVLLVSEHWDLFFQTKELLNPEEYRCTIGQQY-------K----------QELSADLVVCEYSLLPR-------EIRS 67 (121)
T ss_dssp CEEEEEECSCHHHHHHHHHHSCTTTEEEEEESSC-------C----------CCTTEEEEEEEGGGSCT-------TCCC
T ss_pred CcEEEEEecCchhhHHHHHhcCCcceeEEecccc-------C----------CcccceeEEEeeecChH-------HhcC
Confidence 4668999999888888999997778888776532 0 34568999999865321 2333
Q ss_pred cCCCCCCcEEEEeCCCcHHHHHHHHHcCCceEEeCCCCHHHHHHHHHHHhhh
Q 026776 109 SSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVKLSDVKRIKDYLTRD 160 (233)
Q Consensus 109 ~~~~~~~piIvlt~~~~~~~~~~al~~Ga~dyL~KP~~~~eL~~~~~~l~~~ 160 (233)
.......-+|++-.--+++...+.++.|+. ||.+|++..-+..+++...++
T Consensus 68 ~k~~~~~dliVLfD~F~EEa~v~vLd~Ga~-yLlrPIT~kvldAvIraFLrq 118 (121)
T 3q7r_A 68 PKSLEGSFVLVLLDFFDEETSVDLLDRGFW-YLIRPITPRILKSAISLFLSQ 118 (121)
T ss_dssp CTTCCSCEEEEEESSCCHHHHHHHHHTTCE-EEESCCCHHHHHHHHHHHHHH
T ss_pred CCCCCcccEEEEehhhchHHHHHHHhCCce-eEeccCcHHHHHHHHHHHHhc
Confidence 333346678888888889999999999999 999999999999888887764
No 112
>2ayx_A Sensor kinase protein RCSC; two independent structural domains, transferase; NMR {Escherichia coli} SCOP: c.23.1.1 c.23.1.6 PDB: 2ayz_A 2ayy_A
Probab=97.58 E-value=0.00034 Score=57.36 Aligned_cols=96 Identities=15% Similarity=0.090 Sum_probs=69.1
Q ss_pred CCCCcEEEEEeCCHHHHHHHHHHHhhcCCEEEEECCHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCCCCCHHHHHHH
Q 026776 26 DTEEVHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKK 105 (233)
Q Consensus 26 ~~~~~~ILIVddd~~~~~~l~~~L~~~g~~v~~a~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp~~~g~~ll~~ 105 (233)
..++.+||||||+...+..+..+|..+|+++..+.+ . ....+|++|+|+.++...+
T Consensus 8 ~l~~~~vlvv~d~~~~~~~l~~~L~~~g~~v~~~~~-------~-----------~~~~~~~ii~d~~~~~~~~------ 63 (254)
T 2ayx_A 8 GLSGKRCWLAVRNASLCQFLETSLQRSGIVVTTYEG-------Q-----------EPTPEDVLITDEVVSKKWQ------ 63 (254)
T ss_dssp TTTTEEEEEECCCHHHHHHHHHHHTTTTEEEEECSS-------C-----------CCCTTCEEEEESSCSCCCC------
T ss_pred ccCCCEEEEEcCCHHHHHHHHHHHHHCCCEEEEecC-------C-----------CCCcCcEEEEcCCCccccc------
Confidence 356789999999999999999999999999988764 1 2346899999999987543
Q ss_pred HhccCCCCCCcEEEEeCCCcHHHHHHHHHcCCceEEeCCCCHHHHHHHHHHH
Q 026776 106 IKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVKLSDVKRIKDYL 157 (233)
Q Consensus 106 Lr~~~~~~~~piIvlt~~~~~~~~~~al~~Ga~dyL~KP~~~~eL~~~~~~l 157 (233)
...++.++...... ....+...|+.||+...++..++..+
T Consensus 64 --------~~~~i~~~~~~~~~----~~~~~~~~~~~~~~~~~~l~~~l~~~ 103 (254)
T 2ayx_A 64 --------GRAVVTFCRRHIGI----PLEKAPGEWVHSVAAPHELPALLARI 103 (254)
T ss_dssp --------SSEEEEECSSCCCS----CCTTSTTEEEECSSCCSHHHHHHHHH
T ss_pred --------cceEEEEecccCCC----cccccCCceeccccchHHHHHHHHHH
Confidence 11255555543210 11234568999999988877666554
No 113
>3n75_A LDC, lysine decarboxylase, inducible; pyridoxal-5'-phosphate dependent decarboxylase, acid stress stringent response; HET: LLP G4P P6G; 2.00A {Escherichia coli} PDB: 3q16_A*
Probab=97.57 E-value=5.8e-05 Score=71.26 Aligned_cols=94 Identities=11% Similarity=0.094 Sum_probs=72.6
Q ss_pred HHHHHHHHhhcCCEEEEECCHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCCCCCHHHHHHHHhccCCCCCCcEEEEe
Q 026776 42 RKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKKIKDSSALREIPVVIMS 121 (233)
Q Consensus 42 ~~~l~~~L~~~g~~v~~a~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp~~~g~~ll~~Lr~~~~~~~~piIvlt 121 (233)
...|...|+..||+|..+.+.++++..+.. +..+++||+|++++ +.+++++||+.+. .+||++++
T Consensus 19 i~~L~~~Le~~g~~V~~a~s~~Da~~~i~~----------~~~i~avIld~d~~---~~~ll~~Ir~~~~--~iPVFl~~ 83 (715)
T 3n75_A 19 IRELHRALERLNFQIVYPNDRDDLLKLIEN----------NARLCGVIFDWDKY---NLELCEEISKMNE--NLPLYAFA 83 (715)
T ss_dssp HHHHHHHHHHTTCEEECCSSHHHHHHHHHH----------CTTEEEEEEEHHHH---HHHHHHHHHHHCT--TCEEEEEC
T ss_pred HHHHHHHHHHCCcEEEEeCCHHHHHHHHHh----------CCCceEEEEecccc---HHHHHHHHHHhCC--CCCEEEEe
Confidence 344557788899999999999999999952 34589999999885 7899999999876 99999998
Q ss_pred CCCcHHHHHHHHHcCCceEEeCCCCHHHH
Q 026776 122 SENILARIDRCLEDGAEDFIVKPVKLSDV 150 (233)
Q Consensus 122 ~~~~~~~~~~al~~Ga~dyL~KP~~~~eL 150 (233)
.......+....-.++++|+.+..+..++
T Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 112 (715)
T 3n75_A 84 NTYSTLDVSLNDLRLQISFFEYALGAAED 112 (715)
T ss_dssp CTTCCCCGGGTTSCCEEEEECCCTTCHHH
T ss_pred cCCcccccchhhhhccCeEEEeCCCCHHH
Confidence 87543222111235789999998765554
No 114
>2yxb_A Coenzyme B12-dependent mutase; alpha/beta, structural genomics, NPPSFA, national project on structural and functional analyses; 1.80A {Aeropyrum pernix}
Probab=97.00 E-value=0.018 Score=44.00 Aligned_cols=117 Identities=18% Similarity=0.172 Sum_probs=78.4
Q ss_pred CCcEEEEE----eCCHHHHHHHHHHHhhcCCEEEEE---CCHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCCCC--C
Q 026776 28 EEVHVLAV----DDSFVDRKVIERLLTISSCKVTAV---DSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGM--T 98 (233)
Q Consensus 28 ~~~~ILIV----ddd~~~~~~l~~~L~~~g~~v~~a---~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp~~--~ 98 (233)
++.+|++. |-+..-...+..+|+..||+|... ...++..+.+ ....+|+|.+...+... .
T Consensus 17 ~~~~vlla~~~gd~HdiG~~~va~~l~~~G~eVi~lG~~~p~e~lv~aa-----------~~~~~diV~lS~~~~~~~~~ 85 (161)
T 2yxb_A 17 RRYKVLVAKMGLDGHDRGAKVVARALRDAGFEVVYTGLRQTPEQVAMAA-----------VQEDVDVIGVSILNGAHLHL 85 (161)
T ss_dssp CSCEEEEEEESSSSCCHHHHHHHHHHHHTTCEEECCCSBCCHHHHHHHH-----------HHTTCSEEEEEESSSCHHHH
T ss_pred CCCEEEEEeCCCCccHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHH-----------HhcCCCEEEEEeechhhHHH
Confidence 46778877 677788888899999999999864 3667777776 45679999998776531 2
Q ss_pred HHHHHHHHhccCCCCCCcEEEEeCCCcHHHHHHHHHcCCceEEeCCCCHHHHHHHHHHH
Q 026776 99 GYELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVKLSDVKRIKDYL 157 (233)
Q Consensus 99 g~~ll~~Lr~~~~~~~~piIvlt~~~~~~~~~~al~~Ga~dyL~KP~~~~eL~~~~~~l 157 (233)
--++++.|++... .+++|++- +.........+.+.|+|.++..-.+..+....+..+
T Consensus 86 ~~~~i~~L~~~g~-~~i~v~vG-G~~~~~~~~~l~~~G~d~v~~~~~~~~~~~~~~~~~ 142 (161)
T 2yxb_A 86 MKRLMAKLRELGA-DDIPVVLG-GTIPIPDLEPLRSLGIREIFLPGTSLGEIIEKVRKL 142 (161)
T ss_dssp HHHHHHHHHHTTC-TTSCEEEE-ECCCHHHHHHHHHTTCCEEECTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCC-CCCEEEEe-CCCchhcHHHHHHCCCcEEECCCCCHHHHHHHHHHH
Confidence 3556777877542 25665544 444444444567899998776555555554444333
No 115
>3cwo_X Beta/alpha-barrel protein based on 1THF and 1TMY; XRAY, CHEY, HISF, half barrel, de novo protein; 3.10A {Thermotoga maritima} PDB: 2lle_A
Probab=96.35 E-value=0.0057 Score=48.60 Aligned_cols=66 Identities=11% Similarity=0.298 Sum_probs=51.8
Q ss_pred ccEEEEcC-CCCCCCH--HHHHHHHhccCCCCCCcEEEEeCCCcHHHHHHHHHcCCceEE------eCCCCHHHHHHH
Q 026776 85 VDLIITDY-CMPGMTG--YELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFI------VKPVKLSDVKRI 153 (233)
Q Consensus 85 ~DlvllD~-~mp~~~g--~~ll~~Lr~~~~~~~~piIvlt~~~~~~~~~~al~~Ga~dyL------~KP~~~~eL~~~ 153 (233)
.++++.++ .++.++| .+.+++++.. ...|+|++++....+...++++.|+++++ .+|++..++.+.
T Consensus 145 ~~vli~~~~~~g~~~g~~~~~i~~~~~~---~~~Pvia~~g~~~~~~~~~~~~~G~~~~~vg~a~~~~~~~~~~~~~~ 219 (237)
T 3cwo_X 145 GEILLTSIDRDGTKSGYDTEMIRFVRPL---TTLPIIASGGAGKMEHFLEAFLAGADAALAASVFHFREIDVRELKEY 219 (237)
T ss_dssp SEEEEEETTTTTCCSCCCHHHHHHHGGG---CCSCEEEESCCCSHHHHHHHHHHTCSEEEESHHHHTTSSCHHHHHHH
T ss_pred CeEEEEecCCCCccccccHHHHHHHHHh---cCCCEEecCCCCCHHHHHHHHHcCcHHHhhhHHHHcCCCCHHHHHHH
Confidence 45888886 5666666 4566666654 38899999999999999999999999995 788888887654
No 116
>1ccw_A Protein (glutamate mutase); coenzyme B12, radical reaction, TIM-barrel rossman-fold, isomerase; HET: CNC TAR; 1.60A {Clostridium cochlearium} SCOP: c.23.6.1 PDB: 1cb7_A* 1b1a_A 1i9c_A* 1be1_A 1fmf_A 1id8_A*
Probab=95.79 E-value=0.14 Score=37.77 Aligned_cols=110 Identities=12% Similarity=0.027 Sum_probs=71.0
Q ss_pred cEEEEE----eCCHHHHHHHHHHHhhcCCEEEE---ECCHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCCCCC--HH
Q 026776 30 VHVLAV----DDSFVDRKVIERLLTISSCKVTA---VDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMT--GY 100 (233)
Q Consensus 30 ~~ILIV----ddd~~~~~~l~~~L~~~g~~v~~---a~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp~~~--g~ 100 (233)
.+|++. |-+..-...+..+|+..||+|.. .-..++.++.+ ....+|+|.+...+.... .-
T Consensus 4 ~~vvla~~~~d~HdiG~~~v~~~l~~~G~~Vi~lG~~~p~e~~v~~a-----------~~~~~d~v~lS~~~~~~~~~~~ 72 (137)
T 1ccw_A 4 KTIVLGVIGSDCHAVGNKILDHAFTNAGFNVVNIGVLSPQELFIKAA-----------IETKADAILVSSLYGQGEIDCK 72 (137)
T ss_dssp CEEEEEEETTCCCCHHHHHHHHHHHHTTCEEEEEEEEECHHHHHHHH-----------HHHTCSEEEEEECSSTHHHHHT
T ss_pred CEEEEEeCCCchhHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHH-----------HhcCCCEEEEEecCcCcHHHHH
Confidence 455544 44566667788889999999884 45778888777 345799999988775321 23
Q ss_pred HHHHHHhccCCCCCCcEEEEeCC----CcHH-HHHHHHHcCCceEEeCCCCHHHHH
Q 026776 101 ELLKKIKDSSALREIPVVIMSSE----NILA-RIDRCLEDGAEDFIVKPVKLSDVK 151 (233)
Q Consensus 101 ~ll~~Lr~~~~~~~~piIvlt~~----~~~~-~~~~al~~Ga~dyL~KP~~~~eL~ 151 (233)
++++.|++... ++++|++--.. .+.. ....+.+.|++.|+.--.+..++.
T Consensus 73 ~~i~~l~~~g~-~~i~v~vGG~~~~~~~~~~~~~~~~~~~G~d~~~~~g~~~~~~~ 127 (137)
T 1ccw_A 73 GLRQKCDEAGL-EGILLYVGGNIVVGKQHWPDVEKRFKDMGYDRVYAPGTPPEVGI 127 (137)
T ss_dssp THHHHHHHTTC-TTCEEEEEESCSSSSCCHHHHHHHHHHTTCSEECCTTCCHHHHH
T ss_pred HHHHHHHhcCC-CCCEEEEECCCcCchHhhhhhHHHHHHCCCCEEECCCCCHHHHH
Confidence 46777777543 25666544321 1222 244577899999987666666654
No 117
>1wv2_A Thiazole moeity, thiazole biosynthesis protein THIG; structural genomics, protein structure initiative, PSI; 2.90A {Pseudomonas aeruginosa} SCOP: c.1.31.1
Probab=94.67 E-value=0.3 Score=40.07 Aligned_cols=82 Identities=16% Similarity=0.127 Sum_probs=58.5
Q ss_pred HHHHhhcCCEEE--EECCHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCCC-----CCHHHHHHHHhccCCCCCCcEE
Q 026776 46 ERLLTISSCKVT--AVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPG-----MTGYELLKKIKDSSALREIPVV 118 (233)
Q Consensus 46 ~~~L~~~g~~v~--~a~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp~-----~~g~~ll~~Lr~~~~~~~~piI 118 (233)
.+.|.+.||.|. +.++...+.... ...+++| +.+..|. ....++++.+++. . ++|||
T Consensus 128 a~~L~~~Gf~Vlpy~~dd~~~akrl~------------~~G~~aV-mPlg~pIGsG~Gi~~~~lI~~I~e~-~--~vPVI 191 (265)
T 1wv2_A 128 AEQLVKDGFDVMVYTSDDPIIARQLA------------EIGCIAV-MPLAGLIGSGLGICNPYNLRIILEE-A--KVPVL 191 (265)
T ss_dssp HHHHHTTTCEEEEEECSCHHHHHHHH------------HSCCSEE-EECSSSTTCCCCCSCHHHHHHHHHH-C--SSCBE
T ss_pred HHHHHHCCCEEEEEeCCCHHHHHHHH------------HhCCCEE-EeCCccCCCCCCcCCHHHHHHHHhc-C--CCCEE
Confidence 345567799876 567777665553 2346666 5544432 2237899999884 3 78999
Q ss_pred EEeCCCcHHHHHHHHHcCCceEEeC
Q 026776 119 IMSSENILARIDRCLEDGAEDFIVK 143 (233)
Q Consensus 119 vlt~~~~~~~~~~al~~Ga~dyL~K 143 (233)
+=.+-...+++..+++.|+++++.-
T Consensus 192 ~eGGI~TPsDAa~AmeLGAdgVlVg 216 (265)
T 1wv2_A 192 VDAGVGTASDAAIAMELGCEAVLMN 216 (265)
T ss_dssp EESCCCSHHHHHHHHHHTCSEEEES
T ss_pred EeCCCCCHHHHHHHHHcCCCEEEEC
Confidence 8777788999999999999999764
No 118
>1y80_A Predicted cobalamin binding protein; corrinoid, factor IIIM, methyl transferase, structural genomics, PSI, protein structure initiative; HET: B1M; 1.70A {Moorella thermoacetica}
Probab=94.57 E-value=0.22 Score=39.39 Aligned_cols=100 Identities=8% Similarity=0.066 Sum_probs=67.7
Q ss_pred CcEEEEE----eCCHHHHHHHHHHHhhcCCEEEEEC---CHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCCCC--CH
Q 026776 29 EVHVLAV----DDSFVDRKVIERLLTISSCKVTAVD---SGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGM--TG 99 (233)
Q Consensus 29 ~~~ILIV----ddd~~~~~~l~~~L~~~g~~v~~a~---~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp~~--~g 99 (233)
+-+|++. |-+..-...+..+|+..||+|.... ..++.++.+ ....+|+|.+...+... .-
T Consensus 88 ~~~vll~~~~gd~H~iG~~~va~~l~~~G~~v~~LG~~vp~~~l~~~~-----------~~~~~d~v~lS~~~~~~~~~~ 156 (210)
T 1y80_A 88 VGKIVLGTVKGDLHDIGKNLVAMMLESGGFTVYNLGVDIEPGKFVEAV-----------KKYQPDIVGMSALLTTTMMNM 156 (210)
T ss_dssp CCEEEEEEBTTCCCCHHHHHHHHHHHHTTCEEEECCSSBCHHHHHHHH-----------HHHCCSEEEEECCSGGGTHHH
T ss_pred CCEEEEEeCCCcccHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHH-----------HHcCCCEEEEeccccccHHHH
Confidence 4577777 6667777888999999999998754 456666665 34579999998876532 24
Q ss_pred HHHHHHHhccCCCCCCcEEEEeCCCcHHHHHHHHHcCCceEEe
Q 026776 100 YELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIV 142 (233)
Q Consensus 100 ~~ll~~Lr~~~~~~~~piIvlt~~~~~~~~~~al~~Ga~dyL~ 142 (233)
-++++.||+....++++|++-....+.+. +.+.|+|.|..
T Consensus 157 ~~~i~~l~~~~~~~~~~v~vGG~~~~~~~---~~~~gad~~~~ 196 (210)
T 1y80_A 157 KSTIDALIAAGLRDRVKVIVGGAPLSQDF---ADEIGADGYAP 196 (210)
T ss_dssp HHHHHHHHHTTCGGGCEEEEESTTCCHHH---HHHHTCSEECS
T ss_pred HHHHHHHHhcCCCCCCeEEEECCCCCHHH---HHHcCCeEEEC
Confidence 56777888754323577776554445433 34579987754
No 119
>3ezx_A MMCP 1, monomethylamine corrinoid protein 1; N terminal all helical bundle C terminal rossmann fold, cobalt, metal-binding; HET: HCB; 2.56A {Methanosarcina barkeri}
Probab=94.14 E-value=0.23 Score=39.66 Aligned_cols=101 Identities=10% Similarity=0.105 Sum_probs=67.8
Q ss_pred CCcEEEEE----eCCHHHHHHHHHHHhhcCCEEEEEC---CHHHHHHHhhhhhhhhccCCCCCcccEEEE--cCCCCC-C
Q 026776 28 EEVHVLAV----DDSFVDRKVIERLLTISSCKVTAVD---SGRRALQFLGLDEEQSINGFDGLKVDLIIT--DYCMPG-M 97 (233)
Q Consensus 28 ~~~~ILIV----ddd~~~~~~l~~~L~~~g~~v~~a~---~~~~al~~l~~~~~~~~~~~~~~~~Dlvll--D~~mp~-~ 97 (233)
.+.+|++. |-+..-...+..+|+..||+|.... ..++.++.+ ..+.+|+|.+ ..-|.. +
T Consensus 91 ~~~~vll~~v~gd~HdiG~~iv~~~l~~~G~~Vi~LG~~vp~e~iv~~~-----------~~~~~d~v~l~~S~l~~~~~ 159 (215)
T 3ezx_A 91 EAGLAITFVAEGDIHDIGHRLVTTMLGANGFQIVDLGVDVLNENVVEEA-----------AKHKGEKVLLVGSALMTTSM 159 (215)
T ss_dssp -CCEEEEEECTTCCCCHHHHHHHHHHHHTSCEEEECCSSCCHHHHHHHH-----------HHTTTSCEEEEEECSSHHHH
T ss_pred CCCeEEEEeCCCChhHHHHHHHHHHHHHCCCeEEEcCCCCCHHHHHHHH-----------HHcCCCEEEEEchhcccCcH
Confidence 35677776 5567777788888999999998753 566676776 4567999999 776652 2
Q ss_pred -CHHHHHHHHhccCCCCCCcEEEEeCCCcHHHHHHHHHcCCceEEe
Q 026776 98 -TGYELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIV 142 (233)
Q Consensus 98 -~g~~ll~~Lr~~~~~~~~piIvlt~~~~~~~~~~al~~Ga~dyL~ 142 (233)
.--++++.|++.....+++|++-...-..+. +-+.|+|.|-.
T Consensus 160 ~~~~~~i~~l~~~~~~~~v~v~vGG~~~~~~~---a~~iGad~~~~ 202 (215)
T 3ezx_A 160 LGQKDLMDRLNEEKLRDSVKCMFGGAPVSDKW---IEEIGADATAE 202 (215)
T ss_dssp THHHHHHHHHHHTTCGGGSEEEEESSSCCHHH---HHHHTCCBCCS
T ss_pred HHHHHHHHHHHHcCCCCCCEEEEECCCCCHHH---HHHhCCeEEEC
Confidence 2456778888764322567665544445443 34669998864
No 120
>2i2x_B MTAC, methyltransferase 1; TIM barrel and helix bundle (MTAB), rossman fold and helix B (MTAC); HET: B13; 2.50A {Methanosarcina barkeri}
Probab=93.66 E-value=0.75 Score=37.58 Aligned_cols=101 Identities=12% Similarity=0.051 Sum_probs=68.4
Q ss_pred CCcEEEEE----eCCHHHHHHHHHHHhhcCCEEEEE---CCHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCCC-CC-
Q 026776 28 EEVHVLAV----DDSFVDRKVIERLLTISSCKVTAV---DSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPG-MT- 98 (233)
Q Consensus 28 ~~~~ILIV----ddd~~~~~~l~~~L~~~g~~v~~a---~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp~-~~- 98 (233)
.+.+||+. |-+..-...+..+|+..||+|... -..++.++.+ ....+|+|.+...+.. +.
T Consensus 122 ~~~~vlla~~~gd~HdiG~~iva~~L~~~G~~Vi~LG~~vp~e~l~~~~-----------~~~~~d~V~lS~l~~~~~~~ 190 (258)
T 2i2x_B 122 TKGTVVCHVAEGDVHDIGKNIVTALLRANGYNVVDLGRDVPAEEVLAAV-----------QKEKPIMLTGTALMTTTMYA 190 (258)
T ss_dssp CSCEEEEEECTTCCCCHHHHHHHHHHHHTTCEEEEEEEECCSHHHHHHH-----------HHHCCSEEEEECCCTTTTTH
T ss_pred CCCeEEEEeCCCCccHHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHH-----------HHcCCCEEEEEeeccCCHHH
Confidence 45677777 556777788888999999998653 3556666666 3457999999887663 33
Q ss_pred HHHHHHHHhccCCCCCCcEEEEeCCCcHHHHHHHHHcCCceEEeCC
Q 026776 99 GYELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKP 144 (233)
Q Consensus 99 g~~ll~~Lr~~~~~~~~piIvlt~~~~~~~~~~al~~Ga~dyL~KP 144 (233)
--++++.|++... .++|++-......+. +-+.|++.|..-.
T Consensus 191 ~~~~i~~l~~~~~--~~~v~vGG~~~~~~~---~~~igad~~~~da 231 (258)
T 2i2x_B 191 FKEVNDMLLENGI--KIPFACGGGAVNQDF---VSQFALGVYGEEA 231 (258)
T ss_dssp HHHHHHHHHTTTC--CCCEEEESTTCCHHH---HHTSTTEEECSST
T ss_pred HHHHHHHHHhcCC--CCcEEEECccCCHHH---HHHcCCeEEECCH
Confidence 4567888888655 577766554444433 2377987776533
No 121
>2xij_A Methylmalonyl-COA mutase, mitochondrial; isomerase, organic aciduria, vitamin B12; HET: B12 5AD BTB; 1.95A {Homo sapiens} PDB: 2xiq_A* 3bic_A
Probab=93.12 E-value=1.2 Score=42.18 Aligned_cols=113 Identities=15% Similarity=0.070 Sum_probs=74.4
Q ss_pred CCcEEEEE----eCCHHHHHHHHHHHhhcCCEEEEE---CCHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCCCC--C
Q 026776 28 EEVHVLAV----DDSFVDRKVIERLLTISSCKVTAV---DSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGM--T 98 (233)
Q Consensus 28 ~~~~ILIV----ddd~~~~~~l~~~L~~~g~~v~~a---~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp~~--~ 98 (233)
++.+|++. |.+..-...+..+|+..||+|..- .+.++.++.. ....+|+|.+..-+..- .
T Consensus 603 ~r~kVvlatvg~D~HdiG~~iVa~~l~~~GfeVi~lG~~v~~eeiv~aA-----------~e~~adiVglSsl~~~~~~~ 671 (762)
T 2xij_A 603 RRPRLLVAKMGQDGHDRGAKVIATGFADLGFDVDIGPLFQTPREVAQQA-----------VDADVHAVGVSTLAAGHKTL 671 (762)
T ss_dssp SCCEEEEECCSSCCCCHHHHHHHHHHHHTTCEEEECCTTCCHHHHHHHH-----------HHTTCSEEEEEECSSCHHHH
T ss_pred CCCEEEEEecCcchhhHHHHHHHHHHHhCCeEEeeCCCCCCHHHHHHHH-----------HHcCCCEEEEeeecHHHHHH
Confidence 45778776 455666677788899999999864 3567777776 34578999987766432 3
Q ss_pred HHHHHHHHhccCCCCCCcEEEEeCCCcHHHHHHHHHcCCceEEeCCCCHHHHHHH
Q 026776 99 GYELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVKLSDVKRI 153 (233)
Q Consensus 99 g~~ll~~Lr~~~~~~~~piIvlt~~~~~~~~~~al~~Ga~dyL~KP~~~~eL~~~ 153 (233)
.-++++.|++... ..++|+ +.+-.-......+.+.|+++|+..-.+..++...
T Consensus 672 ~~~vi~~Lr~~G~-~dv~Vi-vGG~~P~~d~~~l~~~GaD~~f~pgtd~~e~~~~ 724 (762)
T 2xij_A 672 VPELIKELNSLGR-PDILVM-CGGVIPPQDYEFLFEVGVSNVFGPGTRIPKAAVQ 724 (762)
T ss_dssp HHHHHHHHHHTTC-TTSEEE-EEESCCGGGHHHHHHHTCCEEECTTCCHHHHHHH
T ss_pred HHHHHHHHHhcCC-CCCEEE-EeCCCCcccHHHHHhCCCCEEeCCCCCHHHHHHH
Confidence 4667888887654 244443 3321111233456789999999866677776443
No 122
>1req_A Methylmalonyl-COA mutase; isomerase, intramolecular transferase; HET: B12 DCA; 2.00A {Propionibacterium freudenreichii subspshermanii} SCOP: c.1.19.1 c.23.6.1 PDB: 2req_A* 3req_A* 4req_A* 6req_A* 7req_A* 5req_A* 1e1c_A*
Probab=92.66 E-value=1.2 Score=41.98 Aligned_cols=117 Identities=14% Similarity=0.080 Sum_probs=76.2
Q ss_pred CCcEEEEE----eCCHHHHHHHHHHHhhcCCEEEEEC---CHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCCCC--C
Q 026776 28 EEVHVLAV----DDSFVDRKVIERLLTISSCKVTAVD---SGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGM--T 98 (233)
Q Consensus 28 ~~~~ILIV----ddd~~~~~~l~~~L~~~g~~v~~a~---~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp~~--~ 98 (233)
++.+|++. |.+..-...+..+|+..||+|..-. +.++.++.. ....+|+|.+..-|..- .
T Consensus 595 ~r~kVvlatvg~D~HdiG~~iVa~~l~~~GfeVi~lG~~v~~eeiv~aA-----------~e~~adiVglSsl~~~~~~~ 663 (727)
T 1req_A 595 RRPRILLAKMGQDGHDRGQKVIATAYADLGFDVDVGPLFQTPEETARQA-----------VEADVHVVGVSSLAGGHLTL 663 (727)
T ss_dssp SCCEEEEECBTTCCCCHHHHHHHHHHHHHTCEEEECCTTBCHHHHHHHH-----------HHTTCSEEEEEECSSCHHHH
T ss_pred CCCEEEEEeCCcchhHHHHHHHHHHHHhCCeEEEeCCCCCCHHHHHHHH-----------HHcCCCEEEEeeecHhHHHH
Confidence 45777776 5566666777888999999998743 567777776 34578999988766532 3
Q ss_pred HHHHHHHHhccCCCCCCcEEEEeCCCcHHHHHHHHHcCCceEEeCCCCHHHHH-HHHHHH
Q 026776 99 GYELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVKLSDVK-RIKDYL 157 (233)
Q Consensus 99 g~~ll~~Lr~~~~~~~~piIvlt~~~~~~~~~~al~~Ga~dyL~KP~~~~eL~-~~~~~l 157 (233)
.-++++.|++... .+++|+ +.+-.-......+.+.|+++|+..-.+..++. .++..+
T Consensus 664 ~~~vi~~L~~~G~-~~i~Vi-vGG~~p~~d~~~l~~~GaD~~f~~gt~~~e~a~~l~~~l 721 (727)
T 1req_A 664 VPALRKELDKLGR-PDILIT-VGGVIPEQDFDELRKDGAVEIYTPGTVIPESAISLVKKL 721 (727)
T ss_dssp HHHHHHHHHHTTC-TTSEEE-EEESCCGGGHHHHHHTTEEEEECTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCC-CCCEEE-EcCCCccccHHHHHhCCCCEEEcCCccHHHHHHHHHHHH
Confidence 4567888887653 244443 33311122334567899999998766666654 344444
No 123
>1xrs_B D-lysine 5,6-aminomutase beta subunit; TIM barrel, rossmann domain, PLP, cobalamin, 5'-deoxyad radical, adenosylcobalamin; HET: B12 PLP 5AD; 2.80A {Clostridium sticklandii} SCOP: c.23.6.1 d.230.4.1
Probab=92.66 E-value=1.4 Score=36.20 Aligned_cols=110 Identities=11% Similarity=0.041 Sum_probs=71.3
Q ss_pred CCcEEEEE----eCCHHHHHHHHHH--------Hhhc-CCEEEEEC---CHHHHHHHhhhhhhhhccCCCCCcccEEEEc
Q 026776 28 EEVHVLAV----DDSFVDRKVIERL--------LTIS-SCKVTAVD---SGRRALQFLGLDEEQSINGFDGLKVDLIITD 91 (233)
Q Consensus 28 ~~~~ILIV----ddd~~~~~~l~~~--------L~~~-g~~v~~a~---~~~~al~~l~~~~~~~~~~~~~~~~DlvllD 91 (233)
++.+|++. |-+..-...+..+ |+.. ||+|.... ..++.++.+ ....+|+|.+.
T Consensus 119 ~~~~Vvlatv~gD~HdiG~~iv~~~k~~~~~~~L~~~~G~eVi~LG~~vp~e~iv~aa-----------~e~~~d~VglS 187 (262)
T 1xrs_B 119 RKIVVVGASTGTDAHTVGIDAIMNMKGYAGHYGLERYEMIDAYNLGSQVANEDFIKKA-----------VELEADVLLVS 187 (262)
T ss_dssp SCEEEEEEEBTTCCCCHHHHHHHSTTCBTTBCCGGGCTTEEEEECCSSBCHHHHHHHH-----------HHTTCSEEEEE
T ss_pred CCCEEEEEeCCCCCchHHHHHHhhhhcccchHHHHhcCCcEEEECCCCCCHHHHHHHH-----------HHcCCCEEEEE
Confidence 35667665 4556556666666 8899 99997633 667777776 45679999999
Q ss_pred CCCCCCC-----HHHHHHHHhccCCCCCCcEEEEeCCCcHHHHHHHHHcCCceEEeCCCCHHHHH
Q 026776 92 YCMPGMT-----GYELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVKLSDVK 151 (233)
Q Consensus 92 ~~mp~~~-----g~~ll~~Lr~~~~~~~~piIvlt~~~~~~~~~~al~~Ga~dyL~KP~~~~eL~ 151 (233)
..+...+ --++++.|++.....+++|++=-...+.+ .+.+.|++.|..--....++.
T Consensus 188 ~l~t~~~~~~~~~~~~i~~L~~~g~~~~i~vivGG~~~~~~---~a~~iGad~~~~da~~~~~~a 249 (262)
T 1xrs_B 188 QTVTQKNVHIQNMTHLIELLEAEGLRDRFVLLCGGPRINNE---IAKELGYDAGFGPGRFADDVA 249 (262)
T ss_dssp CCCCTTSHHHHHHHHHHHHHHHTTCGGGSEEEEECTTCCHH---HHHTTTCSEEECTTCCHHHHH
T ss_pred eecCCccchHHHHHHHHHHHHhcCCCCCCEEEEECCcCCHH---HHHHcCCeEEECCchHHHHHH
Confidence 8887522 23467777765432236665443333333 366789999887767666654
No 124
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=92.57 E-value=0.25 Score=42.58 Aligned_cols=58 Identities=10% Similarity=0.160 Sum_probs=48.7
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHhh---cCCEEEEECCHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCCC
Q 026776 28 EEVHVLAVDDSFVDRKVIERLLTI---SSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPG 96 (233)
Q Consensus 28 ~~~~ILIVddd~~~~~~l~~~L~~---~g~~v~~a~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp~ 96 (233)
-++++.|+|.|....+.|..++.+ ..+++..+.+.+.+.+.++ ...+|++|+|-.+..
T Consensus 20 ~~i~l~i~d~d~~Y~~~l~~y~~~~~~~~~~v~~ft~~e~~~~~~~-----------~~~~dilli~e~~~~ 80 (373)
T 3fkq_A 20 MKIKVALLDKDKEYLDRLTGVFNTKYADKLEVYSFTDEKNAIESVK-----------EYRIDVLIAEEDFNI 80 (373)
T ss_dssp CCEEEEEECSCHHHHHHHHHHHHHHTTTTEEEEEESCHHHHHHHHH-----------HHTCSEEEEETTCCC
T ss_pred ceEEEEEEeCCHHHHHHHHHHHhhccCCceEEEEECCHHHHHHHHh-----------cCCCCEEEEcchhhh
Confidence 479999999999999999999864 3589999999999999873 346899999876654
No 125
>3kp1_A D-ornithine aminomutase E component; 5 aminomutase (OAM), metal binding protein; HET: PLP B12 5AD; 2.01A {Clostridium sticklandii} PDB: 3kow_A* 3koy_A* 3koz_A* 3kp0_A* 3kox_A*
Probab=92.07 E-value=1.2 Score=41.27 Aligned_cols=117 Identities=10% Similarity=0.055 Sum_probs=74.0
Q ss_pred CCcEEEEE----eCCHHHHHHH----HHHHhhcCCEEEEEC---CHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCCC
Q 026776 28 EEVHVLAV----DDSFVDRKVI----ERLLTISSCKVTAVD---SGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPG 96 (233)
Q Consensus 28 ~~~~ILIV----ddd~~~~~~l----~~~L~~~g~~v~~a~---~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp~ 96 (233)
++.+|++. |-+..-...+ ..+|+..||+|.... ..++.++.+ ....+|+|.+..-|..
T Consensus 601 ~kGKVVIATVgGD~HDIGKklVaNIVa~~LE~aGFEVIDLGvdVPpEeIVeAA-----------~EedADVVGLSsLLTt 669 (763)
T 3kp1_A 601 TPLKIVAATVGEDEHSVGLREVIDIKHGGIEKYGVEVHYLGTSVPVEKLVDAA-----------IELKADAILASTIISH 669 (763)
T ss_dssp SCCEEEEEEBTTCCCCHHHHHTTSTTTTCGGGGTCEEEECCSSBCHHHHHHHH-----------HHTTCSEEEEECCCCG
T ss_pred cCCEEEEEeCCCChhhhhhHHHHHHHHHHHHhCCCEEEECCCCCCHHHHHHHH-----------HHcCCCEEEEeccccC
Confidence 35678777 3343333222 467899999998643 677888777 4567999999988876
Q ss_pred ----CCH-HHHHHHHhccCCCCCCcEEEEeCCCcHHHHHHHHHcCCceEEeCCCCHHHHH-HHHHHHh
Q 026776 97 ----MTG-YELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVKLSDVK-RIKDYLT 158 (233)
Q Consensus 97 ----~~g-~~ll~~Lr~~~~~~~~piIvlt~~~~~~~~~~al~~Ga~dyL~KP~~~~eL~-~~~~~l~ 158 (233)
+.. -++++.|++......++|++=......+. +.+.|++.|........++. .++..+.
T Consensus 670 ~dihL~~MkevIelLrE~GlrDkIkVIVGGa~~tqd~---AkeIGADa~f~DATeAVeVA~~Ll~~l~ 734 (763)
T 3kp1_A 670 DDIHYKNMKRIHELAVEKGIRDKIMIGCGGTQVTPEV---AVKQGVDAGFGRGSKGIHVATFLVKKRR 734 (763)
T ss_dssp GGHHHHHHHHHHHHHHHTTCTTTSEEEEECTTCCHHH---HHTTTCSEEECTTCCHHHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHHHHhcCCCCCCEEEEECCCCCHHH---HHHcCCcEEECCcchHHHHHHHHHHHHH
Confidence 233 35777788765422355554433334332 45899999988777666653 3444443
No 126
>3q58_A N-acetylmannosamine-6-phosphate 2-epimerase; TIM beta/alpha barrel, ribulose-phosphate binding barrel, carbohydrate metabolic process; HET: BTB; 1.80A {Salmonella enterica subsp}
Probab=91.70 E-value=2.1 Score=34.34 Aligned_cols=87 Identities=13% Similarity=0.122 Sum_probs=59.6
Q ss_pred HHHHHHHHHhhcCCEEE-EECCHHHHHHHhhhhhhhhccCCCCCcccEEEEcCC------CCCCCHHHHHHHHhccCCCC
Q 026776 41 DRKVIERLLTISSCKVT-AVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYC------MPGMTGYELLKKIKDSSALR 113 (233)
Q Consensus 41 ~~~~l~~~L~~~g~~v~-~a~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~------mp~~~g~~ll~~Lr~~~~~~ 113 (233)
....+.+.+++.|..+. .+.+.+++..... ..+|+|.+... .....++++++++++.
T Consensus 117 ~l~~~i~~~~~~g~~v~~~v~t~eea~~a~~------------~Gad~Ig~~~~g~t~~~~~~~~~~~li~~l~~~---- 180 (229)
T 3q58_A 117 DIDSLLTRIRLHGLLAMADCSTVNEGISCHQ------------KGIEFIGTTLSGYTGPITPVEPDLAMVTQLSHA---- 180 (229)
T ss_dssp CHHHHHHHHHHTTCEEEEECSSHHHHHHHHH------------TTCSEEECTTTTSSSSCCCSSCCHHHHHHHHTT----
T ss_pred HHHHHHHHHHHCCCEEEEecCCHHHHHHHHh------------CCCCEEEecCccCCCCCcCCCCCHHHHHHHHHc----
Confidence 33444445566676444 4678888776652 34787764221 1234568899999863
Q ss_pred CCcEEEEeCCCcHHHHHHHHHcCCceEEeC
Q 026776 114 EIPVVIMSSENILARIDRCLEDGAEDFIVK 143 (233)
Q Consensus 114 ~~piIvlt~~~~~~~~~~al~~Ga~dyL~K 143 (233)
.+|+|.-.+-.+.+.+.++++.|+++++.=
T Consensus 181 ~ipvIA~GGI~t~~d~~~~~~~GadgV~VG 210 (229)
T 3q58_A 181 GCRVIAEGRYNTPALAANAIEHGAWAVTVG 210 (229)
T ss_dssp TCCEEEESSCCSHHHHHHHHHTTCSEEEEC
T ss_pred CCCEEEECCCCCHHHHHHHHHcCCCEEEEc
Confidence 789998888778899999999999999864
No 127
>2htm_A Thiazole biosynthesis protein THIG; thiamin biosynthesis, THIG, thermus thermophilus HB8, structural genomics, NPPSFA; 2.30A {Thermus thermophilus}
Probab=91.64 E-value=0.33 Score=40.00 Aligned_cols=81 Identities=19% Similarity=0.157 Sum_probs=54.6
Q ss_pred HHhhcCCEEE--EECCHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCCCCCH-----HHHHHHHhccCCCCC-CcEEE
Q 026776 48 LLTISSCKVT--AVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTG-----YELLKKIKDSSALRE-IPVVI 119 (233)
Q Consensus 48 ~L~~~g~~v~--~a~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp~~~g-----~~ll~~Lr~~~~~~~-~piIv 119 (233)
.|.+.||.|. +..|...+-... ...+++| +.+..|-..| .++++.+++... + +|||+
T Consensus 119 ~L~k~Gf~Vlpy~~~D~~~ak~l~------------~~G~~aV-mPlg~pIGsG~Gi~~~~~L~~i~~~~~--~~vPVI~ 183 (268)
T 2htm_A 119 RLIEEDFLVLPYMGPDLVLAKRLA------------ALGTATV-MPLAAPIGSGWGVRTRALLELFAREKA--SLPPVVV 183 (268)
T ss_dssp HHHHTTCEECCEECSCHHHHHHHH------------HHTCSCB-EEBSSSTTTCCCSTTHHHHHHHHHTTT--TSSCBEE
T ss_pred HHHHCCCEEeeccCCCHHHHHHHH------------hcCCCEE-EecCccCcCCcccCCHHHHHHHHHhcC--CCCeEEE
Confidence 4456688765 556765444433 1245666 6655543322 566888887433 6 89998
Q ss_pred EeCCCcHHHHHHHHHcCCceEEeC
Q 026776 120 MSSENILARIDRCLEDGAEDFIVK 143 (233)
Q Consensus 120 lt~~~~~~~~~~al~~Ga~dyL~K 143 (233)
=.+-...+++..++++|+++++.-
T Consensus 184 ~GGI~tpsDAa~AmeLGAdgVlVg 207 (268)
T 2htm_A 184 DAGLGLPSHAAEVMELGLDAVLVN 207 (268)
T ss_dssp ESCCCSHHHHHHHHHTTCCEEEES
T ss_pred eCCCCCHHHHHHHHHcCCCEEEEC
Confidence 777788999999999999999754
No 128
>1r8j_A KAIA; circadian clock protein; 2.03A {Synechococcus elongatus pcc 7942} SCOP: a.186.1.1 c.23.1.5 PDB: 1m2e_A 1m2f_A
Probab=90.73 E-value=3.4 Score=33.93 Aligned_cols=83 Identities=11% Similarity=0.164 Sum_probs=68.5
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHhhcCCEEEEECCHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCCCCCHHHHHHHHh
Q 026776 28 EEVHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKKIK 107 (233)
Q Consensus 28 ~~~~ILIVddd~~~~~~l~~~L~~~g~~v~~a~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp~~~g~~ll~~Lr 107 (233)
..+.|.+.-.++.....+..+|....|.+..+.+.++.++.+.. ..+++|++|+.. .+..-..+...|.
T Consensus 8 ~~LsI~~~~~s~~l~~~~~~~L~~dRY~l~~~~s~~~f~~~le~---------~~e~iDcLvle~--~~~~~~~~~~~L~ 76 (289)
T 1r8j_A 8 SQIAICIWVESTAILQDCQRALSADRYQLQVCESGEMLLEYAQT---------HRDQIDCLILVA--ANPSFRAVVQQLC 76 (289)
T ss_dssp CCEEEEEECCCHHHHHHHHHHTCSTTEEEEEECSHHHHHHHHHH---------STTSCSEEEEET--TSTTHHHHHHHHH
T ss_pred cceeEEEEeCCHHHHHHHHHhcccCceEEEEcCcHHHHHHHHHh---------ccccCCEEEEEe--CCCccHHHHHHHH
Confidence 46889999999999999999998888999999999999998854 456799999875 1345778889998
Q ss_pred ccCCCCCCcEEEEeCC
Q 026776 108 DSSALREIPVVIMSSE 123 (233)
Q Consensus 108 ~~~~~~~~piIvlt~~ 123 (233)
+.+. -.|+|++...
T Consensus 77 ~~g~--lLP~vil~~~ 90 (289)
T 1r8j_A 77 FEGV--VVPAIVVGDR 90 (289)
T ss_dssp HTTC--CCCEEEESCC
T ss_pred HcCc--cccEEEeccC
Confidence 8766 7899988664
No 129
>2ekc_A AQ_1548, tryptophan synthase alpha chain; structural genomics, lyase, NPPSFA, national project on PROT structural and functional analyses; 2.00A {Aquifex aeolicus}
Probab=88.77 E-value=1.4 Score=35.97 Aligned_cols=60 Identities=20% Similarity=0.327 Sum_probs=43.3
Q ss_pred HHHHHHHHhccCCCCCCcEEEEeCCC------cHHHHHHHHHcCCceEEeCCCCHHHHHHHHHHHhhh
Q 026776 99 GYELLKKIKDSSALREIPVVIMSSEN------ILARIDRCLEDGAEDFIVKPVKLSDVKRIKDYLTRD 160 (233)
Q Consensus 99 g~~ll~~Lr~~~~~~~~piIvlt~~~------~~~~~~~al~~Ga~dyL~KP~~~~eL~~~~~~l~~~ 160 (233)
.+++++++|+..+ .+|+++++... .......+.++|+++++.-.+..+++...+..+.+.
T Consensus 81 ~~~~v~~ir~~~~--~~Pi~~m~y~n~v~~~g~~~f~~~~~~aG~dgvii~dl~~ee~~~~~~~~~~~ 146 (262)
T 2ekc_A 81 VLELSETLRKEFP--DIPFLLMTYYNPIFRIGLEKFCRLSREKGIDGFIVPDLPPEEAEELKAVMKKY 146 (262)
T ss_dssp HHHHHHHHHHHCT--TSCEEEECCHHHHHHHCHHHHHHHHHHTTCCEEECTTCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhhcC--CCCEEEEecCcHHHHhhHHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHHHHc
Confidence 4566888887533 68998874332 145667788999999999888888877777666543
No 130
>3igs_A N-acetylmannosamine-6-phosphate 2-epimerase 2; energy metabolism, sugars, csgid, carbohydrate metabolism, isomerase; HET: MSE 16G; 1.50A {Salmonella enterica subsp} SCOP: c.1.2.0
Probab=88.22 E-value=4.3 Score=32.51 Aligned_cols=87 Identities=18% Similarity=0.118 Sum_probs=58.9
Q ss_pred HHHHHHHHHhhcCCEEE-EECCHHHHHHHhhhhhhhhccCCCCCcccEEEEcCC------CCCCCHHHHHHHHhccCCCC
Q 026776 41 DRKVIERLLTISSCKVT-AVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYC------MPGMTGYELLKKIKDSSALR 113 (233)
Q Consensus 41 ~~~~l~~~L~~~g~~v~-~a~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~------mp~~~g~~ll~~Lr~~~~~~ 113 (233)
....+.+.+++.|..+. .+.+.+++..... ..+|+|.+... .....++++++++++.
T Consensus 117 ~l~~~i~~~~~~g~~v~~~v~t~eea~~a~~------------~Gad~Ig~~~~g~t~~~~~~~~~~~~i~~l~~~---- 180 (232)
T 3igs_A 117 AVEALLARIHHHHLLTMADCSSVDDGLACQR------------LGADIIGTTMSGYTTPDTPEEPDLPLVKALHDA---- 180 (232)
T ss_dssp CHHHHHHHHHHTTCEEEEECCSHHHHHHHHH------------TTCSEEECTTTTSSSSSCCSSCCHHHHHHHHHT----
T ss_pred HHHHHHHHHHHCCCEEEEeCCCHHHHHHHHh------------CCCCEEEEcCccCCCCCCCCCCCHHHHHHHHhc----
Confidence 33444445566676444 4667777766542 34677754221 1233468899999874
Q ss_pred CCcEEEEeCCCcHHHHHHHHHcCCceEEeC
Q 026776 114 EIPVVIMSSENILARIDRCLEDGAEDFIVK 143 (233)
Q Consensus 114 ~~piIvlt~~~~~~~~~~al~~Ga~dyL~K 143 (233)
.+|+|.-.+-.+.+.+.++++.|+++++.=
T Consensus 181 ~ipvIA~GGI~t~~d~~~~~~~GadgV~VG 210 (232)
T 3igs_A 181 GCRVIAEGRYNSPALAAEAIRYGAWAVTVG 210 (232)
T ss_dssp TCCEEEESCCCSHHHHHHHHHTTCSEEEEC
T ss_pred CCcEEEECCCCCHHHHHHHHHcCCCEEEEe
Confidence 689988887778899999999999999764
No 131
>1geq_A Tryptophan synthase alpha-subunit; hyperthermophIle, pyrococ furiosus, X-RAY analysis, stability, calorimetry, lyase; 2.00A {Pyrococcus furiosus} SCOP: c.1.2.4 PDB: 1wdw_A* 2dzu_A 2dzp_A 2e09_A 2dzw_A 2dzs_A 2dzv_A 2dzt_A 2dzx_A
Probab=87.86 E-value=2.9 Score=33.40 Aligned_cols=57 Identities=16% Similarity=0.300 Sum_probs=40.2
Q ss_pred HHHHHHHHhccCCCCCCcEEEEeCCCc------HHHHHHHHHcCCceEEeCCCCHHHHHHHHHHHh
Q 026776 99 GYELLKKIKDSSALREIPVVIMSSENI------LARIDRCLEDGAEDFIVKPVKLSDVKRIKDYLT 158 (233)
Q Consensus 99 g~~ll~~Lr~~~~~~~~piIvlt~~~~------~~~~~~al~~Ga~dyL~KP~~~~eL~~~~~~l~ 158 (233)
++++++.+|+.. ++|+++++.... .+.+..++++|++.++.-....++..++++.+.
T Consensus 68 ~~~~i~~i~~~~---~~pv~~~~~~~~~~~~~~~~~~~~~~~~Gad~v~~~~~~~~~~~~~~~~~~ 130 (248)
T 1geq_A 68 AFWIVKEFRRHS---STPIVLMTYYNPIYRAGVRNFLAEAKASGVDGILVVDLPVFHAKEFTEIAR 130 (248)
T ss_dssp HHHHHHHHHTTC---CCCEEEEECHHHHHHHCHHHHHHHHHHHTCCEEEETTCCGGGHHHHHHHHH
T ss_pred HHHHHHHHHhhC---CCCEEEEeccchhhhcCHHHHHHHHHHCCCCEEEECCCChhhHHHHHHHHH
Confidence 477888888752 578888774332 567888999999999987666666555555444
No 132
>1qop_A Tryptophan synthase alpha chain; lyase, carbon-oxygen lyase, tryptophan biosynthesis, pyridoxal phosphate; HET: IPL PLP; 1.4A {Salmonella typhimurium} SCOP: c.1.2.4 PDB: 1k8x_A* 1wbj_A* 2clk_A* 2j9z_A* 3cep_A* 1k8y_A* 1a5s_A* 1a50_A* 1c29_A* 1c8v_A* 1c9d_A* 1bks_A* 1cx9_A* 1fuy_A* 1cw2_A* 1k7e_A* 1k7f_A* 1k7x_A* 1k3u_A* 1k8z_A* ...
Probab=86.67 E-value=2.1 Score=34.99 Aligned_cols=60 Identities=23% Similarity=0.411 Sum_probs=43.6
Q ss_pred HHHHHHHHhccCCCCCCcEEEEeCCC------cHHHHHHHHHcCCceEEeCCCCHHHHHHHHHHHhhh
Q 026776 99 GYELLKKIKDSSALREIPVVIMSSEN------ILARIDRCLEDGAEDFIVKPVKLSDVKRIKDYLTRD 160 (233)
Q Consensus 99 g~~ll~~Lr~~~~~~~~piIvlt~~~------~~~~~~~al~~Ga~dyL~KP~~~~eL~~~~~~l~~~ 160 (233)
++++++.+|+... .+|+++++... ....+..+.++|+++++.-.+..+++.+.+..+.+.
T Consensus 81 ~~~~v~~ir~~~~--~~Pv~lm~y~n~v~~~g~~~~~~~~~~aGadgii~~d~~~e~~~~~~~~~~~~ 146 (268)
T 1qop_A 81 CFEMLAIIREKHP--TIPIGLLMYANLVFNNGIDAFYARCEQVGVDSVLVADVPVEESAPFRQAALRH 146 (268)
T ss_dssp HHHHHHHHHHHCS--SSCEEEEECHHHHHTTCHHHHHHHHHHHTCCEEEETTCCGGGCHHHHHHHHHT
T ss_pred HHHHHHHHHhcCC--CCCEEEEEcccHHHHhhHHHHHHHHHHcCCCEEEEcCCCHHHHHHHHHHHHHc
Confidence 4577888887533 67888775222 256778899999999999888887777777666543
No 133
>3vnd_A TSA, tryptophan synthase alpha chain; psychrophilic enzyme, cold adaptation; HET: PE8; 2.60A {Shewanella frigidimarina}
Probab=86.29 E-value=1 Score=37.07 Aligned_cols=58 Identities=10% Similarity=0.321 Sum_probs=44.2
Q ss_pred HHHHHHHhccCCCCCCcEEEEeCCC------cHHHHHHHHHcCCceEEeCCCCHHHHHHHHHHHhh
Q 026776 100 YELLKKIKDSSALREIPVVIMSSEN------ILARIDRCLEDGAEDFIVKPVKLSDVKRIKDYLTR 159 (233)
Q Consensus 100 ~~ll~~Lr~~~~~~~~piIvlt~~~------~~~~~~~al~~Ga~dyL~KP~~~~eL~~~~~~l~~ 159 (233)
+++++.+|+... ++|+++++-.+ ......++.++|+++++.-.+..++..+.+..+.+
T Consensus 83 ~~~v~~ir~~~~--~~Pivlm~Y~npv~~~g~e~f~~~~~~aGvdgvii~Dlp~ee~~~~~~~~~~ 146 (267)
T 3vnd_A 83 FDIITKVRAQHP--DMPIGLLLYANLVFANGIDEFYTKAQAAGVDSVLIADVPVEESAPFSKAAKA 146 (267)
T ss_dssp HHHHHHHHHHCT--TCCEEEEECHHHHHHHCHHHHHHHHHHHTCCEEEETTSCGGGCHHHHHHHHH
T ss_pred HHHHHHHHhcCC--CCCEEEEecCcHHHHhhHHHHHHHHHHcCCCEEEeCCCCHhhHHHHHHHHHH
Confidence 677888886533 78998886533 25678889999999999988888887777666654
No 134
>3nav_A Tryptophan synthase alpha chain; alpha subunit, structural genomics, CSG center for structural genomics of infectious diseases; 2.10A {Vibrio cholerae o1 biovar el tor} SCOP: c.1.2.4
Probab=86.17 E-value=1.2 Score=36.71 Aligned_cols=60 Identities=17% Similarity=0.359 Sum_probs=44.7
Q ss_pred CHHHHHHHHhccCCCCCCcEEEEeCC------CcHHHHHHHHHcCCceEEeCCCCHHHHHHHHHHHhh
Q 026776 98 TGYELLKKIKDSSALREIPVVIMSSE------NILARIDRCLEDGAEDFIVKPVKLSDVKRIKDYLTR 159 (233)
Q Consensus 98 ~g~~ll~~Lr~~~~~~~~piIvlt~~------~~~~~~~~al~~Ga~dyL~KP~~~~eL~~~~~~l~~ 159 (233)
+.+++++++|+... .+|+++++-. +......+|.++|+++++.-.+..++.......+.+
T Consensus 83 ~~~~~v~~~r~~~~--~~Pivlm~Y~n~v~~~g~~~f~~~~~~aGvdGvIipDlp~ee~~~~~~~~~~ 148 (271)
T 3nav_A 83 ICFELIAQIRARNP--ETPIGLLMYANLVYARGIDDFYQRCQKAGVDSVLIADVPTNESQPFVAAAEK 148 (271)
T ss_dssp HHHHHHHHHHHHCT--TSCEEEEECHHHHHHTCHHHHHHHHHHHTCCEEEETTSCGGGCHHHHHHHHH
T ss_pred HHHHHHHHHHhcCC--CCCEEEEecCcHHHHHhHHHHHHHHHHCCCCEEEECCCCHHHHHHHHHHHHH
Confidence 34678888887533 7899998633 345678899999999999988888887666666554
No 135
>3bul_A Methionine synthase; transferase, reactivation conformation, cobalamin, intermodular interactions, amino-acid biosynthesis, cobalt; HET: B12; 2.30A {Escherichia coli} SCOP: a.46.1.1 c.23.6.1 d.173.1.1 PDB: 3iv9_A* 3iva_A* 1k7y_A* 1k98_A* 1bmt_A*
Probab=84.07 E-value=4.5 Score=37.06 Aligned_cols=104 Identities=12% Similarity=0.179 Sum_probs=67.4
Q ss_pred CCcEEEEE----eCCHHHHHHHHHHHhhcCCEEEEEC---CHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCCCC--C
Q 026776 28 EEVHVLAV----DDSFVDRKVIERLLTISSCKVTAVD---SGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGM--T 98 (233)
Q Consensus 28 ~~~~ILIV----ddd~~~~~~l~~~L~~~g~~v~~a~---~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp~~--~ 98 (233)
.+.+||+. |-+..-...+..+|+..||+|.... ..++.++.+ ....+|+|.+...+... .
T Consensus 97 ~~~kVLlatv~GD~HdiG~~iva~~L~~~G~eVi~LG~~vP~e~iv~aa-----------~~~~~diVgLS~l~t~~~~~ 165 (579)
T 3bul_A 97 TNGKMVIATVKGDVHDIGKNIVGVVLQCNNYEIVDLGVMVPAEKILRTA-----------KEVNADLIGLSGLITPSLDE 165 (579)
T ss_dssp CSCEEEEEEBTTCCCCHHHHHHHHHHHTTTCEEEECCSSBCHHHHHHHH-----------HHHTCSEEEEECCSTHHHHH
T ss_pred CCCeEEEEECCCCCchHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHH-----------HHcCCCEEEEEecCCCCHHH
Confidence 35677777 5567777788888999999998643 566666666 34579999998866521 1
Q ss_pred HHHHHHHHhccCCCCCCcEEEEeCCCcHHHHHHHH---HcCCceEEeCC
Q 026776 99 GYELLKKIKDSSALREIPVVIMSSENILARIDRCL---EDGAEDFIVKP 144 (233)
Q Consensus 99 g~~ll~~Lr~~~~~~~~piIvlt~~~~~~~~~~al---~~Ga~dyL~KP 144 (233)
--++++.|++... +++|++-...........-+ -.|+|.|....
T Consensus 166 m~~~i~~Lr~~g~--~i~ViVGGa~~~~~~a~~~i~p~~~GAD~ya~DA 212 (579)
T 3bul_A 166 MVNVAKEMERQGF--TIPLLIGGATTSKAHTAVKIEQNYSGPTVYVQNA 212 (579)
T ss_dssp HHHHHHHHHHTTC--CSCEEEESTTCCHHHHHHHTGGGCSSCEEECCSH
T ss_pred HHHHHHHHHHcCC--CCeEEEEccccchhhhhhhhhhcccCCeEEECCH
Confidence 2356778877654 78877655544444332111 12888776543
No 136
>3ec7_A Putative dehydrogenase; alpha-beta, structural genomics, PSI-2, protein structure in midwest center for structural genomics, MCSG; HET: MSE NAD EPE; 2.15A {Salmonella typhimurium}
Probab=83.86 E-value=4.9 Score=34.06 Aligned_cols=116 Identities=19% Similarity=0.154 Sum_probs=60.2
Q ss_pred CCCCCCCCcEEEEEeCCHHHHHHHHHHH-hhcCCEEEEE-CCHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCCCCCH
Q 026776 22 LSPSDTEEVHVLAVDDSFVDRKVIERLL-TISSCKVTAV-DSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTG 99 (233)
Q Consensus 22 ~~~~~~~~~~ILIVddd~~~~~~l~~~L-~~~g~~v~~a-~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp~~~g 99 (233)
-+..++++++|.||.--..-...+..+. ...++++..+ +...+..+.+.. ...+.+-..+ +-
T Consensus 16 ~~~~~m~~~rvgiIG~G~~g~~~~~~l~~~~~~~~lvav~d~~~~~~~~~a~----------~~g~~~~~~~------~~ 79 (357)
T 3ec7_A 16 NLYFQGMTLKAGIVGIGMIGSDHLRRLANTVSGVEVVAVCDIVAGRAQAALD----------KYAIEAKDYN------DY 79 (357)
T ss_dssp ------CCEEEEEECCSHHHHHHHHHHHHTCTTEEEEEEECSSTTHHHHHHH----------HHTCCCEEES------SH
T ss_pred ccccCCCeeeEEEECCcHHHHHHHHHHHhhCCCcEEEEEEeCCHHHHHHHHH----------HhCCCCeeeC------CH
Confidence 4444567899999998776665566555 3357777643 322222222210 0111111111 21
Q ss_pred HHHHHHHhccCCCCCCcEEEEeCC--CcHHHHHHHHHcCCceEEeCCC--CHHHHHHHHHHHhhh
Q 026776 100 YELLKKIKDSSALREIPVVIMSSE--NILARIDRCLEDGAEDFIVKPV--KLSDVKRIKDYLTRD 160 (233)
Q Consensus 100 ~~ll~~Lr~~~~~~~~piIvlt~~--~~~~~~~~al~~Ga~dyL~KP~--~~~eL~~~~~~l~~~ 160 (233)
-++ |... .+-+|+++.. ...+.+..++++|..=|+.||+ +.++..++++...+.
T Consensus 80 ~~l---l~~~----~~D~V~i~tp~~~h~~~~~~al~aGk~Vl~EKPla~~~~e~~~l~~~a~~~ 137 (357)
T 3ec7_A 80 HDL---INDK----DVEVVIITASNEAHADVAVAALNANKYVFCEKPLAVTAADCQRVIEAEQKN 137 (357)
T ss_dssp HHH---HHCT----TCCEEEECSCGGGHHHHHHHHHHTTCEEEEESSSCSSHHHHHHHHHHHHHH
T ss_pred HHH---hcCC----CCCEEEEcCCcHHHHHHHHHHHHCCCCEEeecCccCCHHHHHHHHHHHHHh
Confidence 222 2221 3444444433 3456778899999999999996 466666666655543
No 137
>3abi_A Putative uncharacterized protein PH1688; L-lysine dehydrogenase, oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii}
Probab=83.67 E-value=5.1 Score=34.05 Aligned_cols=108 Identities=13% Similarity=0.072 Sum_probs=54.0
Q ss_pred eeeeeccccccCCCCCCCCCcEEEEEeCCHHHHHHHHHHHhhcCCEEEEECCHHHHHHHhhhhhhhhccCCCCCcccEEE
Q 026776 10 LRLISDEIDGFDLSPSDTEEVHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLII 89 (233)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~ILIVddd~~~~~~l~~~L~~~g~~v~~a~~~~~al~~l~~~~~~~~~~~~~~~~Dlvl 89 (233)
.|++++.|+. ++|||+|+.- -.+...+.+.|.+ .++|..++-..+.++.+. . ....+-
T Consensus 5 ~~~~~~~~~g--------~~mkilvlGa-G~vG~~~~~~L~~-~~~v~~~~~~~~~~~~~~-----------~-~~~~~~ 62 (365)
T 3abi_A 5 VHHHHHHIEG--------RHMKVLILGA-GNIGRAIAWDLKD-EFDVYIGDVNNENLEKVK-----------E-FATPLK 62 (365)
T ss_dssp -------------------CCEEEEECC-SHHHHHHHHHHTT-TSEEEEEESCHHHHHHHT-----------T-TSEEEE
T ss_pred cccccccccC--------CccEEEEECC-CHHHHHHHHHHhc-CCCeEEEEcCHHHHHHHh-----------c-cCCcEE
Confidence 3555566665 6789999987 6667777778864 477777765455555552 1 123344
Q ss_pred EcCCCCCCCHHHHHHHHhccCCCCCCcEEEEeCCCcHHHHHHHHHcCCceEEeCCCCHH
Q 026776 90 TDYCMPGMTGYELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVKLS 148 (233)
Q Consensus 90 lD~~mp~~~g~~ll~~Lr~~~~~~~~piIvlt~~~~~~~~~~al~~Ga~dyL~KP~~~~ 148 (233)
+|. .|--.+.+.+++. ++.|..+-.+.....+..|++.|.+ |+.--+..+
T Consensus 63 ~d~----~d~~~l~~~~~~~----DvVi~~~p~~~~~~v~~~~~~~g~~-yvD~s~~~~ 112 (365)
T 3abi_A 63 VDA----SNFDKLVEVMKEF----ELVIGALPGFLGFKSIKAAIKSKVD-MVDVSFMPE 112 (365)
T ss_dssp CCT----TCHHHHHHHHTTC----SEEEECCCGGGHHHHHHHHHHHTCE-EEECCCCSS
T ss_pred Eec----CCHHHHHHHHhCC----CEEEEecCCcccchHHHHHHhcCcc-eEeeeccch
Confidence 554 2333444444432 2222222222345667788888875 665444433
No 138
>2v5j_A 2,4-dihydroxyhept-2-ENE-1,7-dioic acid aldolase; lyase, class II aldolase, homoprotocatechuate, aromatic DEGR aromatic hydrocarbons catabolism; 1.60A {Escherichia coli} PDB: 2v5k_A
Probab=83.44 E-value=18 Score=29.87 Aligned_cols=75 Identities=15% Similarity=0.141 Sum_probs=50.2
Q ss_pred CCcccEEEEcCCCCCCCHHHHHHHHhccCCCCCCcEEEEeCCCcHHHHHHHHHcCCceEEe-CCCCHHHHHHHHHHH
Q 026776 82 GLKVDLIITDYCMPGMTGYELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIV-KPVKLSDVKRIKDYL 157 (233)
Q Consensus 82 ~~~~DlvllD~~mp~~~g~~ll~~Lr~~~~~~~~piIvlt~~~~~~~~~~al~~Ga~dyL~-KP~~~~eL~~~~~~l 157 (233)
...+|.|++|++-...+--.+...++..... ..++++=+...+...+..+++.|++..+. |--+.+++.++++.+
T Consensus 58 ~~GaD~v~lDlEh~~~~~~~~~~~l~a~~~~-~~~~~VRv~~~d~~di~~~ld~ga~~ImlP~V~saeea~~~~~~~ 133 (287)
T 2v5j_A 58 GAGFDWLLIDGEHAPNNVQTVLTQLQAIAPY-PSQPVVRPSWNDPVQIKQLLDVGTQTLLVPMVQNADEAREAVRAT 133 (287)
T ss_dssp TSCCSEEEEESSSSSCCHHHHHHHHHHHTTS-SSEEEEECSSSCHHHHHHHHHTTCCEEEESCCCSHHHHHHHHHHT
T ss_pred hCCCCEEEEeCCCccchHHHHHHHHHHHHhc-CCCEEEEECCCCHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHHh
Confidence 4568999999976666655565555543322 45566555666677888999999987654 334567777666544
No 139
>3ffs_A Inosine-5-monophosphate dehydrogenase; beta-alpha barrel, TIM fold, oxidoreductase; 3.19A {Cryptosporidium parvum}
Probab=83.11 E-value=19 Score=31.34 Aligned_cols=101 Identities=16% Similarity=0.196 Sum_probs=62.1
Q ss_pred cEEEEEeC----CHHHHHHHHHHHhhcCCEEE--EECCHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCC---------
Q 026776 30 VHVLAVDD----SFVDRKVIERLLTISSCKVT--AVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCM--------- 94 (233)
Q Consensus 30 ~~ILIVdd----d~~~~~~l~~~L~~~g~~v~--~a~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~m--------- 94 (233)
..++++|- .....+.++.+-+..+..|. .+.+.+++..+.. ...|.|++...-
T Consensus 157 vdvIvldta~G~~~~~~e~I~~ik~~~~i~Vi~g~V~t~e~A~~a~~------------aGAD~I~vG~g~Gs~~~tr~~ 224 (400)
T 3ffs_A 157 VDVIVLDSAHGHSLNIIRTLKEIKSKMNIDVIVGNVVTEEATKELIE------------NGADGIKVGIGPGSICTTRIV 224 (400)
T ss_dssp CSEEEECCSCCSBHHHHHHHHHHHTTCCCEEEEEEECSHHHHHHHHH------------TTCSEEEECC---------CC
T ss_pred CCEEEEeCCCCCcccHHHHHHHHHhcCCCeEEEeecCCHHHHHHHHH------------cCCCEEEEeCCCCcCcccccc
Confidence 45666642 23334555544444465554 4778888877652 347888873210
Q ss_pred --CCCCHHHHHHHHhccCCCCCCcEEEEeCCCcHHHHHHHHHcCCceEEe
Q 026776 95 --PGMTGYELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIV 142 (233)
Q Consensus 95 --p~~~g~~ll~~Lr~~~~~~~~piIvlt~~~~~~~~~~al~~Ga~dyL~ 142 (233)
.+...++++.++.+......+|||.-.+-.+...+.+++.+||+.+..
T Consensus 225 ~g~g~p~~~al~~v~~~~~~~~IPVIA~GGI~~~~di~kalalGAd~V~v 274 (400)
T 3ffs_A 225 AGVGVPQITAIEKCSSVASKFGIPIIADGGIRYSGDIGKALAVGASSVMI 274 (400)
T ss_dssp SCBCCCHHHHHHHHHHHHTTTTCCEEEESCCCSHHHHHHHHTTTCSEEEE
T ss_pred cccchhHHHHHHHHHHHHHhcCCCEEecCCCCCHHHHHHHHHcCCCEEEE
Confidence 012345666666543222378998877777889999999999998864
No 140
>1ujp_A Tryptophan synthase alpha chain; riken structural genomics/P initiative, RSGI, structural genomics, lyase; HET: CIT; 1.34A {Thermus thermophilus} SCOP: c.1.2.4 PDB: 1wxj_A*
Probab=82.90 E-value=1.9 Score=35.59 Aligned_cols=58 Identities=14% Similarity=0.164 Sum_probs=42.6
Q ss_pred HHHHHHHhccCCCCCCcEEEEeCC------CcHHHHHHHHHcCCceEEeCCCCHHHHHHHHHHHhhh
Q 026776 100 YELLKKIKDSSALREIPVVIMSSE------NILARIDRCLEDGAEDFIVKPVKLSDVKRIKDYLTRD 160 (233)
Q Consensus 100 ~~ll~~Lr~~~~~~~~piIvlt~~------~~~~~~~~al~~Ga~dyL~KP~~~~eL~~~~~~l~~~ 160 (233)
+++++++|+. . .+|+++++-. +.......+.++|+++++.-.+..+++......+.+.
T Consensus 80 ~~~v~~ir~~-~--~~Pii~m~y~n~v~~~g~~~f~~~~~~aG~dGviv~Dl~~ee~~~~~~~~~~~ 143 (271)
T 1ujp_A 80 LELVREVRAL-T--EKPLFLMTYLNPVLAWGPERFFGLFKQAGATGVILPDLPPDEDPGLVRLAQEI 143 (271)
T ss_dssp HHHHHHHHHH-C--CSCEEEECCHHHHHHHCHHHHHHHHHHHTCCEEECTTCCGGGCHHHHHHHHHH
T ss_pred HHHHHHHHhc-C--CCCEEEEecCcHHHHhhHHHHHHHHHHcCCCEEEecCCCHHHHHHHHHHHHHc
Confidence 5778888876 3 7899997532 2245677789999999999888887777766666543
No 141
>2vws_A YFAU, 2-keto-3-deoxy sugar aldolase; lyase, escherichia coli K-12 protein YFAU, 2-keto-3-deoxy SU aldolase, degradation of homoprotocatechuate; 1.39A {Escherichia coli} PDB: 2vwt_A
Probab=81.80 E-value=19 Score=29.18 Aligned_cols=75 Identities=15% Similarity=0.134 Sum_probs=49.9
Q ss_pred CCcccEEEEcCCCCCCCHHHHHHHHhccCCCCCCcEEEEeCCCcHHHHHHHHHcCCceEEe-CCCCHHHHHHHHHHH
Q 026776 82 GLKVDLIITDYCMPGMTGYELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIV-KPVKLSDVKRIKDYL 157 (233)
Q Consensus 82 ~~~~DlvllD~~mp~~~g~~ll~~Lr~~~~~~~~piIvlt~~~~~~~~~~al~~Ga~dyL~-KP~~~~eL~~~~~~l 157 (233)
...+|.|++|++-...+--++...++..... ..++++=+...+...+..+++.|++..+. |--+.+++.++++.+
T Consensus 37 ~~GaD~v~lDlE~~~~~~~~~~~~~~a~~~~-~~~~~VRv~~~~~~~i~~~l~~g~~~I~~P~V~s~ee~~~~~~~~ 112 (267)
T 2vws_A 37 TSGYDWLLIDGEHAPNTIQDLYHQLQAVAPY-ASQPVIRPVEGSKPLIKQVLDIGAQTLLIPMVDTAEQARQVVSAT 112 (267)
T ss_dssp TTCCSEEEEETTTSCCCHHHHHHHHHHHTTS-SSEEEEECSSCCHHHHHHHHHTTCCEEEECCCCSHHHHHHHHHHT
T ss_pred hCCCCEEEEcCCCCCCCHHHHHHHHHHHHhC-CCcEEEEeCCCCHHHHHHHHHhCCCEEEeCCCCCHHHHHHHHHHH
Confidence 4568999999976656655565555543322 44555545556778888999999987644 335577777766554
No 142
>3rht_A (gatase1)-like protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 1.83A {Planctomyces limnophilus}
Probab=81.16 E-value=0.65 Score=38.17 Aligned_cols=78 Identities=18% Similarity=0.146 Sum_probs=46.1
Q ss_pred CcEEEEEeCC--HHHHHHHHHHHhhcCCEEEEECCHHH--HHHHhhhhhhhhccCCCCCcccEEEEcCCCC-CC--CHHH
Q 026776 29 EVHVLAVDDS--FVDRKVIERLLTISSCKVTAVDSGRR--ALQFLGLDEEQSINGFDGLKVDLIITDYCMP-GM--TGYE 101 (233)
Q Consensus 29 ~~~ILIVddd--~~~~~~l~~~L~~~g~~v~~a~~~~~--al~~l~~~~~~~~~~~~~~~~DlvllD~~mp-~~--~g~~ 101 (233)
..+||||+++ +.....+.++|+..||+|.......- -.+.+ ..||+||++-... .. +-.+
T Consensus 4 m~~vLiV~g~~~~~~a~~l~~aL~~~g~~V~~i~~~~~~~~~~~L-------------~~yDvIIl~d~~~~~l~~~~~~ 70 (259)
T 3rht_A 4 MTRVLYCGDTSLETAAGYLAGLMTSWQWEFDYIPSHVGLDVGELL-------------AKQDLVILSDYPAERMTAQAID 70 (259)
T ss_dssp --CEEEEESSCTTTTHHHHHHHHHHTTCCCEEECTTSCBCSSHHH-------------HTCSEEEEESCCGGGBCHHHHH
T ss_pred CceEEEECCCCchhHHHHHHHHHHhCCceEEEecccccccChhHH-------------hcCCEEEEcCCccccCCHHHHH
Confidence 3579999988 66778899999999999988664321 01122 2589998863221 12 2333
Q ss_pred HHHHHhccCCCCCCcEEEEeCC
Q 026776 102 LLKKIKDSSALREIPVVIMSSE 123 (233)
Q Consensus 102 ll~~Lr~~~~~~~~piIvlt~~ 123 (233)
.++..-+. ..-+|++.+.
T Consensus 71 ~L~~yV~~----GGgLi~~gG~ 88 (259)
T 3rht_A 71 QLVTMVKA----GCGLVMLGGW 88 (259)
T ss_dssp HHHHHHHT----TCEEEEECST
T ss_pred HHHHHHHh----CCeEEEecCc
Confidence 44433322 3456766554
No 143
>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary protein KEFF; potassium channel regulation, domains, antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli} PDB: 3eyw_A* 3l9x_A*
Probab=81.00 E-value=14 Score=32.09 Aligned_cols=55 Identities=15% Similarity=0.199 Sum_probs=36.4
Q ss_pred cccEEEEcCCCCCCCHHHHHHHHhccCCCCCCcEEEEeCCCcHHHHHHHHHcCCceEEeC
Q 026776 84 KVDLIITDYCMPGMTGYELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVK 143 (233)
Q Consensus 84 ~~DlvllD~~mp~~~g~~ll~~Lr~~~~~~~~piIvlt~~~~~~~~~~al~~Ga~dyL~K 143 (233)
..|+||+-+.- +.....++..+|+..+ .+.||+-+.. ........++|++.++.-
T Consensus 68 ~A~~viv~~~~-~~~n~~i~~~ar~~~p--~~~Iiara~~--~~~~~~L~~~Gad~Vi~~ 122 (413)
T 3l9w_A 68 KAEVLINAIDD-PQTNLQLTEMVKEHFP--HLQIIARARD--VDHYIRLRQAGVEKPERE 122 (413)
T ss_dssp TCSEEEECCSS-HHHHHHHHHHHHHHCT--TCEEEEEESS--HHHHHHHHHTTCSSCEET
T ss_pred ccCEEEECCCC-hHHHHHHHHHHHHhCC--CCeEEEEECC--HHHHHHHHHCCCCEEECc
Confidence 57888875532 2234556777777655 7778777654 455666788999988753
No 144
>3qz6_A HPCH/HPAI aldolase; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; 2.00A {Desulfitobacterium hafniense} SCOP: c.1.12.0
Probab=79.86 E-value=9.8 Score=30.94 Aligned_cols=74 Identities=18% Similarity=0.193 Sum_probs=50.1
Q ss_pred CcccEEEEcCCCCCCCHHHHHHHHhccCCCCCCcEEEEeCCCcHHHHHHHHHcCCceEEe-CCCCHHHHHHHHHHH
Q 026776 83 LKVDLIITDYCMPGMTGYELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIV-KPVKLSDVKRIKDYL 157 (233)
Q Consensus 83 ~~~DlvllD~~mp~~~g~~ll~~Lr~~~~~~~~piIvlt~~~~~~~~~~al~~Ga~dyL~-KP~~~~eL~~~~~~l 157 (233)
..+|.|++|++-...+.-.+...++..... ...+++=....+..++..+++.|+++.+. |--+.+++.++.+.+
T Consensus 36 ~g~D~vilDlEhav~~~~k~~~~l~a~~~~-~~~~~VRVn~~~~~di~~~ld~G~~gI~lP~v~saed~~~~~~~~ 110 (261)
T 3qz6_A 36 AGLDYFIVDCEHAAYTFREINHLVSVAKNA-GVSVLVRIPQVDRAHVQRLLDIGAEGFMIPGVQSAETMRETVRLA 110 (261)
T ss_dssp TTCSEEEEESSSSCCCHHHHHHHHHHHHHH-TCEEEEECSSCCHHHHHHHHHHTCCEEEETTCCSHHHHHHHHHHH
T ss_pred CCcCEEEEeccCCCCCHHHHHHHHHHHhhc-CCeEEEEeCCCCHHHHHHHHhcCCCEEEECCcCCHHHHHHHHHHh
Confidence 468999999998877766666666543211 33444433445567888999999998755 345677787777666
No 145
>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}
Probab=79.78 E-value=14 Score=26.36 Aligned_cols=107 Identities=12% Similarity=0.090 Sum_probs=55.2
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhcCCEEEEECCHHHHHHHhhhhhhhhcc----------CCCCCcccEEEEcCCCCCCCH
Q 026776 30 VHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSIN----------GFDGLKVDLIITDYCMPGMTG 99 (233)
Q Consensus 30 ~~ILIVddd~~~~~~l~~~L~~~g~~v~~a~~~~~al~~l~~~~~~~~~----------~~~~~~~DlvllD~~mp~~~g 99 (233)
-+|+|+.-.. +...+.+.|...|+.|...+.-.+.++.+...+..... ...-...|++++-+.-. ...
T Consensus 8 ~~viIiG~G~-~G~~la~~L~~~g~~v~vid~~~~~~~~~~~~g~~~i~gd~~~~~~l~~a~i~~ad~vi~~~~~~-~~n 85 (140)
T 3fwz_A 8 NHALLVGYGR-VGSLLGEKLLASDIPLVVIETSRTRVDELRERGVRAVLGNAANEEIMQLAHLECAKWLILTIPNG-YEA 85 (140)
T ss_dssp SCEEEECCSH-HHHHHHHHHHHTTCCEEEEESCHHHHHHHHHTTCEEEESCTTSHHHHHHTTGGGCSEEEECCSCH-HHH
T ss_pred CCEEEECcCH-HHHHHHHHHHHCCCCEEEEECCHHHHHHHHHcCCCEEECCCCCHHHHHhcCcccCCEEEEECCCh-HHH
Confidence 4566666544 34445555556666666655444444433211110000 00113568888754321 123
Q ss_pred HHHHHHHhccCCCCCCcEEEEeCCCcHHHHHHHHHcCCceEEe
Q 026776 100 YELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIV 142 (233)
Q Consensus 100 ~~ll~~Lr~~~~~~~~piIvlt~~~~~~~~~~al~~Ga~dyL~ 142 (233)
..++..+|...+ ...+|+...+ .+......++|++..+.
T Consensus 86 ~~~~~~a~~~~~--~~~iiar~~~--~~~~~~l~~~G~d~vi~ 124 (140)
T 3fwz_A 86 GEIVASARAKNP--DIEIIARAHY--DDEVAYITERGANQVVM 124 (140)
T ss_dssp HHHHHHHHHHCS--SSEEEEEESS--HHHHHHHHHTTCSEEEE
T ss_pred HHHHHHHHHHCC--CCeEEEEECC--HHHHHHHHHCCCCEEEC
Confidence 345566676554 6677766644 34555667899987764
No 146
>3rc1_A Sugar 3-ketoreductase; sugar biosynthesis, TDP binding, NADP binding binding protein; HET: TLO NAP; 1.71A {Actinomadura kijaniata} PDB: 3rbv_A* 3rc2_A* 3rcb_A* 3rc7_A* 3rc9_A*
Probab=79.71 E-value=5.5 Score=33.64 Aligned_cols=111 Identities=17% Similarity=0.212 Sum_probs=59.1
Q ss_pred CCCCCCCCcEEEEEeCCHHHHH-HHHHHHhhcCCEEEEE-C-CHHHHHHHhhhhhhhhccCCCCCcccEEE-EcCCCCCC
Q 026776 22 LSPSDTEEVHVLAVDDSFVDRK-VIERLLTISSCKVTAV-D-SGRRALQFLGLDEEQSINGFDGLKVDLII-TDYCMPGM 97 (233)
Q Consensus 22 ~~~~~~~~~~ILIVddd~~~~~-~l~~~L~~~g~~v~~a-~-~~~~al~~l~~~~~~~~~~~~~~~~Dlvl-lD~~mp~~ 97 (233)
..+..+++++|.||.--..-.. .+..+.+..++++..+ + +.+.+-+... .+.+-. -|+
T Consensus 20 ~~~~~m~~~rigiIG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~-------------~~g~~~~~~~----- 81 (350)
T 3rc1_A 20 ENPANANPIRVGVIGCADIAWRRALPALEAEPLTEVTAIASRRWDRAKRFTE-------------RFGGEPVEGY----- 81 (350)
T ss_dssp ------CCEEEEEESCCHHHHHTHHHHHHHCTTEEEEEEEESSHHHHHHHHH-------------HHCSEEEESH-----
T ss_pred CCCCCCCceEEEEEcCcHHHHHHHHHHHHhCCCeEEEEEEcCCHHHHHHHHH-------------HcCCCCcCCH-----
Confidence 3344577899999998766553 4444444347777643 3 3333333221 122211 221
Q ss_pred CHHHHHHHHhccCCCCCCcEEEEeCCC--cHHHHHHHHHcCCceEEeCCC--CHHHHHHHHHHHhh
Q 026776 98 TGYELLKKIKDSSALREIPVVIMSSEN--ILARIDRCLEDGAEDFIVKPV--KLSDVKRIKDYLTR 159 (233)
Q Consensus 98 ~g~~ll~~Lr~~~~~~~~piIvlt~~~--~~~~~~~al~~Ga~dyL~KP~--~~~eL~~~~~~l~~ 159 (233)
-+.|.. . .+-+|+++... ..+.+..++++|..=|+.||+ +.++..++++...+
T Consensus 82 -----~~ll~~--~--~~D~V~i~tp~~~h~~~~~~al~aGk~Vl~EKP~a~~~~ea~~l~~~a~~ 138 (350)
T 3rc1_A 82 -----PALLER--D--DVDAVYVPLPAVLHAEWIDRALRAGKHVLAEKPLTTDRPQAERLFAVARE 138 (350)
T ss_dssp -----HHHHTC--T--TCSEEEECCCGGGHHHHHHHHHHTTCEEEEESSSCSSHHHHHHHHHHHHH
T ss_pred -----HHHhcC--C--CCCEEEECCCcHHHHHHHHHHHHCCCcEEEeCCCCCCHHHHHHHHHHHHH
Confidence 122222 1 44455554433 456778899999999999996 45666666666554
No 147
>4e5v_A Putative THUA-like protein; THUA-like proteins, trehalose utilisation, structural genomi center for structural genomics, JCSG; 1.75A {Parabacteroides merdae}
Probab=79.57 E-value=2.1 Score=35.49 Aligned_cols=77 Identities=21% Similarity=0.215 Sum_probs=47.9
Q ss_pred CCcEEEEEeCC-----HHHHHHHHHHHhhcC-CEEEEECCHH-----HHHHHhhhhhhhhccCCCCCcccEEEEcCCCCC
Q 026776 28 EEVHVLAVDDS-----FVDRKVIERLLTISS-CKVTAVDSGR-----RALQFLGLDEEQSINGFDGLKVDLIITDYCMPG 96 (233)
Q Consensus 28 ~~~~ILIVddd-----~~~~~~l~~~L~~~g-~~v~~a~~~~-----~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp~ 96 (233)
++++||||... +.....|..+|++.| |+|....+.. +.+. . .-..+|+||++.....
T Consensus 3 ~~~kvLiv~G~~~H~~~~~~~~l~~~l~~~g~f~V~~~~d~~~~~d~~~f~----------~--~L~~~D~vV~~~~~~~ 70 (281)
T 4e5v_A 3 KPIKTLLITGQNNHNWQVSHVVLKQILENSGRFDVDFVISPEQGKDMSGFV----------L--DFSPYQLVVLDYNGDS 70 (281)
T ss_dssp CCEEEEEEESCCSSCHHHHHHHHHHHHHHTTSEEEEEEECCCTTSCCTTCC----------C--CCTTCSEEEECCCSSC
T ss_pred CceEEEEEcCCCCCChHHHHHHHHHHHHhcCCEEEEEEeCCccccchhHHh----------h--hhhcCCEEEEeCCCCc
Confidence 57999999762 556678899999888 9998886631 1110 0 1135999999886544
Q ss_pred CCHH--H-HHHHHhccCCCCCCcEEEEe
Q 026776 97 MTGY--E-LLKKIKDSSALREIPVVIMS 121 (233)
Q Consensus 97 ~~g~--~-ll~~Lr~~~~~~~~piIvlt 121 (233)
.+.- + +.+.++. ...+|++=
T Consensus 71 l~~~~~~~l~~yV~~-----Ggglv~~H 93 (281)
T 4e5v_A 71 WPEETNRRFLEYVQN-----GGGVVIYH 93 (281)
T ss_dssp CCHHHHHHHHHHHHT-----TCEEEEEG
T ss_pred CCHHHHHHHHHHHHc-----CCCEEEEe
Confidence 4322 2 2233332 55677663
No 148
>2gek_A Phosphatidylinositol mannosyltransferase (PIMA); GT4 glycosyltransferase, rossmann fold, complex; HET: GDP; 2.40A {Mycobacterium smegmatis} PDB: 2gej_A*
Probab=79.08 E-value=22 Score=29.59 Aligned_cols=65 Identities=15% Similarity=0.073 Sum_probs=42.4
Q ss_pred ccEEEEcCCCCCCCHHHHHHHHhccCCCCCCcEEEEeCCCcHHHHHHHHHcCCceEEeCCCCHHHHHHHHHHHh
Q 026776 85 VDLIITDYCMPGMTGYELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVKLSDVKRIKDYLT 158 (233)
Q Consensus 85 ~DlvllD~~mp~~~g~~ll~~Lr~~~~~~~~piIvlt~~~~~~~~~~al~~Ga~dyL~KP~~~~eL~~~~~~l~ 158 (233)
.|++|+-..-.+.-|..+++.+.. .+|+|+. .. ....+.+..|..+|+.+|.+.+++.+.+..+.
T Consensus 283 adv~v~ps~~~e~~~~~~~Ea~a~-----G~PvI~~-~~---~~~~e~i~~~~~g~~~~~~d~~~l~~~i~~l~ 347 (406)
T 2gek_A 283 ADVYCAPHLGGESFGIVLVEAMAA-----GTAVVAS-DL---DAFRRVLADGDAGRLVPVDDADGMAAALIGIL 347 (406)
T ss_dssp SSEEEECCCSCCSSCHHHHHHHHH-----TCEEEEC-CC---HHHHHHHTTTTSSEECCTTCHHHHHHHHHHHH
T ss_pred CCEEEecCCCCCCCchHHHHHHHc-----CCCEEEe-cC---CcHHHHhcCCCceEEeCCCCHHHHHHHHHHHH
Confidence 567776422133346667777654 6677643 22 33456677788999999999999977766654
No 149
>3l4e_A Uncharacterized peptidase LMO0363; hypothetical protein LMO0363, csgid, similar to peptidase E, hydrolase, protease, serine protease; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=78.19 E-value=12 Score=29.16 Aligned_cols=64 Identities=19% Similarity=0.136 Sum_probs=46.7
Q ss_pred CcEEEEEe------CCHHHHHHHHHHHhhcCCEEEEE----CCHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCCCCC
Q 026776 29 EVHVLAVD------DSFVDRKVIERLLTISSCKVTAV----DSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMT 98 (233)
Q Consensus 29 ~~~ILIVd------dd~~~~~~l~~~L~~~g~~v~~a----~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp~~~ 98 (233)
..+|++|+ |...+...+.+.|+..|+++... .+.++..+.+. ..|.|++ |+.+
T Consensus 27 ~~~i~~Ip~As~~~~~~~~~~s~~~a~~~lG~~v~~~~i~~~~~~~~~~~l~-------------~ad~I~l----~GG~ 89 (206)
T 3l4e_A 27 GKTVTFIPTASTVEEVTFYVEAGKKALESLGLLVEELDIATESLGEITTKLR-------------KNDFIYV----TGGN 89 (206)
T ss_dssp TCEEEEECGGGGGCSCCHHHHHHHHHHHHTTCEEEECCTTTSCHHHHHHHHH-------------HSSEEEE----CCSC
T ss_pred CCEEEEECCCCCCCCHHHHHHHHHHHHHHcCCeEEEEEecCCChHHHHHHHH-------------hCCEEEE----CCCC
Confidence 47899996 33446677888999999998887 37766666662 3588887 7777
Q ss_pred HHHHHHHHhcc
Q 026776 99 GYELLKKIKDS 109 (233)
Q Consensus 99 g~~ll~~Lr~~ 109 (233)
-..+++.|++.
T Consensus 90 ~~~l~~~L~~~ 100 (206)
T 3l4e_A 90 TFFLLQELKRT 100 (206)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHC
Confidence 77777766654
No 150
>3o63_A Probable thiamine-phosphate pyrophosphorylase; thiamin biosynthesis, TIM barrel, transferase; 2.35A {Mycobacterium tuberculosis}
Probab=76.05 E-value=14 Score=29.67 Aligned_cols=71 Identities=15% Similarity=0.258 Sum_probs=49.1
Q ss_pred EECCHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCCC-------CCHHHHHHHHhccCCCCCCcEEEEeCCCcHHHHH
Q 026776 58 AVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPG-------MTGYELLKKIKDSSALREIPVVIMSSENILARID 130 (233)
Q Consensus 58 ~a~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp~-------~~g~~ll~~Lr~~~~~~~~piIvlt~~~~~~~~~ 130 (233)
.+.+.+++..... ..+|.|.+.--.|. .-|++.++++++... ..+|++++.+- +.+.+.
T Consensus 141 S~ht~~Ea~~A~~------------~GaDyI~vgpvf~T~tK~~~~~~gl~~l~~~~~~~~-~~iPvvAiGGI-~~~ni~ 206 (243)
T 3o63_A 141 STHDPDQVAAAAA------------GDADYFCVGPCWPTPTKPGRAAPGLGLVRVAAELGG-DDKPWFAIGGI-NAQRLP 206 (243)
T ss_dssp EECSHHHHHHHHH------------SSCSEEEECCSSCCCC-----CCCHHHHHHHHTC----CCCEEEESSC-CTTTHH
T ss_pred eCCCHHHHHHHhh------------CCCCEEEEcCccCCCCCCCcchhhHHHHHHHHHhcc-CCCCEEEecCC-CHHHHH
Confidence 4567777766542 35799988654432 237888998886421 27899998765 556678
Q ss_pred HHHHcCCceEEe
Q 026776 131 RCLEDGAEDFIV 142 (233)
Q Consensus 131 ~al~~Ga~dyL~ 142 (233)
+++++|++++..
T Consensus 207 ~~~~aGa~gvav 218 (243)
T 3o63_A 207 AVLDAGARRIVV 218 (243)
T ss_dssp HHHHTTCCCEEE
T ss_pred HHHHcCCCEEEE
Confidence 899999999875
No 151
>1z0s_A Probable inorganic polyphosphate/ATP-NAD kinase; ATP-binding, structural genomics, NADP, PSI, protein structure initiative; HET: ATP; 1.70A {Archaeoglobus fulgidus} SCOP: e.52.1.1 PDB: 1z0u_A* 1z0z_A* 1suw_A*
Probab=75.97 E-value=2.4 Score=35.14 Aligned_cols=98 Identities=14% Similarity=0.151 Sum_probs=56.0
Q ss_pred CCCCCCcEEEEEeCCHHHHHHHHHHHhhcCCEEEEECCHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCCCCCHHHHH
Q 026776 24 PSDTEEVHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELL 103 (233)
Q Consensus 24 ~~~~~~~~ILIVddd~~~~~~l~~~L~~~g~~v~~a~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp~~~g~~ll 103 (233)
+.....|+|.|+-......+.+.++|++.|+++.......+. + ..+|+||. -+.|| .++
T Consensus 24 ~~~~~~mki~iv~~~~~~~~~l~~~L~~~g~~v~~~~~~~~~---~-------------~~~DlvIv----lGGDG-T~L 82 (278)
T 1z0s_A 24 GGGGGGMRAAVVYKTDGHVKRIEEALKRLEVEVELFNQPSEE---L-------------ENFDFIVS----VGGDG-TIL 82 (278)
T ss_dssp ------CEEEEEESSSTTHHHHHHHHHHTTCEEEEESSCCGG---G-------------GGSSEEEE----EECHH-HHH
T ss_pred CCCccceEEEEEeCCcHHHHHHHHHHHHCCCEEEEccccccc---c-------------CCCCEEEE----ECCCH-HHH
Confidence 333446889888543222677888899999988765432111 1 24688776 25666 466
Q ss_pred HHHhccCCCCCCcEEEEeCCCcHHHHHHHHHcCCceEEeCCCCHHHHHHHHHHHh
Q 026776 104 KKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVKLSDVKRIKDYLT 158 (233)
Q Consensus 104 ~~Lr~~~~~~~~piIvlt~~~~~~~~~~al~~Ga~dyL~KP~~~~eL~~~~~~l~ 158 (233)
+..+.... . +||+-+.. |-.+||. ++..+++...++.+.
T Consensus 83 ~aa~~~~~-~-~PilGIN~-------------G~lGFLt-~~~~~~~~~~l~~l~ 121 (278)
T 1z0s_A 83 RILQKLKR-C-PPIFGINT-------------GRVGLLT-HASPENFEVELKKAV 121 (278)
T ss_dssp HHHTTCSS-C-CCEEEEEC-------------SSSCTTC-CBBTTBCHHHHHHHH
T ss_pred HHHHHhCC-C-CcEEEECC-------------CCCcccc-ccCHHHHHHHHHHHH
Confidence 66666443 2 89998854 4455665 345555555554444
No 152
>1yad_A Regulatory protein TENI; TIM barrel, transcription; 2.10A {Bacillus subtilis} PDB: 3qh2_A*
Probab=75.17 E-value=20 Score=27.77 Aligned_cols=69 Identities=25% Similarity=0.302 Sum_probs=46.9
Q ss_pred EECCHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCCC-------CCHHHHHHHHhccCCCCCCcEEEEeCCCcHHHHH
Q 026776 58 AVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPG-------MTGYELLKKIKDSSALREIPVVIMSSENILARID 130 (233)
Q Consensus 58 ~a~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp~-------~~g~~ll~~Lr~~~~~~~~piIvlt~~~~~~~~~ 130 (233)
.+.+.+++..... ...|.|+++...+. ..|++.++++++.. .+|+++..+- +.+.+.
T Consensus 116 sv~t~~~~~~a~~------------~gaD~i~~~~~f~~~~~~g~~~~~~~~l~~~~~~~---~~pvia~GGI-~~~nv~ 179 (221)
T 1yad_A 116 SVHSLEEAVQAEK------------EDADYVLFGHVFETDCKKGLEGRGVSLLSDIKQRI---SIPVIAIGGM-TPDRLR 179 (221)
T ss_dssp EECSHHHHHHHHH------------TTCSEEEEECCC----------CHHHHHHHHHHHC---CSCEEEESSC-CGGGHH
T ss_pred EcCCHHHHHHHHh------------CCCCEEEECCccccCCCCCCCCCCHHHHHHHHHhC---CCCEEEECCC-CHHHHH
Confidence 4567777665542 24788988764332 23678888887642 6788877665 677888
Q ss_pred HHHHcCCceEEe
Q 026776 131 RCLEDGAEDFIV 142 (233)
Q Consensus 131 ~al~~Ga~dyL~ 142 (233)
+++++|++.+..
T Consensus 180 ~~~~~Ga~gv~v 191 (221)
T 1yad_A 180 DVKQAGADGIAV 191 (221)
T ss_dssp HHHHTTCSEEEE
T ss_pred HHHHcCCCEEEE
Confidence 899999998754
No 153
>3qja_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, T structural genomics consortium, TBSGC, lyase; 1.29A {Mycobacterium tuberculosis} PDB: 3t40_A* 3t44_A* 3t55_A* 3t78_A* 4fb7_A*
Probab=74.53 E-value=31 Score=28.16 Aligned_cols=99 Identities=11% Similarity=-0.007 Sum_probs=60.9
Q ss_pred EEEEEeC--CHHHHHHHHHHHhhcCCEEE-EECCHHHHHHHhhhhhhhhccCCCCCcccEEEEcCC---CCCCCHHHHHH
Q 026776 31 HVLAVDD--SFVDRKVIERLLTISSCKVT-AVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYC---MPGMTGYELLK 104 (233)
Q Consensus 31 ~ILIVdd--d~~~~~~l~~~L~~~g~~v~-~a~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~---mp~~~g~~ll~ 104 (233)
.|+++.. +......+.......|..+. .+.+.+++...+. ..+|+|-+.-. ... -+++.+.
T Consensus 138 ~VlLi~a~l~~~~l~~l~~~a~~lGl~~lvev~t~ee~~~A~~------------~Gad~IGv~~r~l~~~~-~dl~~~~ 204 (272)
T 3qja_A 138 MLLLIVAALEQSVLVSMLDRTESLGMTALVEVHTEQEADRALK------------AGAKVIGVNARDLMTLD-VDRDCFA 204 (272)
T ss_dssp EEEEEGGGSCHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHH------------HTCSEEEEESBCTTTCC-BCTTHHH
T ss_pred EEEEecccCCHHHHHHHHHHHHHCCCcEEEEcCCHHHHHHHHH------------CCCCEEEECCCcccccc-cCHHHHH
Confidence 3555432 22233344445566787543 4678877655542 23677776521 111 1355667
Q ss_pred HHhccCCCCCCcEEEEeCCCcHHHHHHHHHcCCceEEeC
Q 026776 105 KIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVK 143 (233)
Q Consensus 105 ~Lr~~~~~~~~piIvlt~~~~~~~~~~al~~Ga~dyL~K 143 (233)
+|...-+ ..+|+|...+-.+.+.+.++.+.|+++++.=
T Consensus 205 ~l~~~v~-~~~pvVaegGI~t~edv~~l~~~GadgvlVG 242 (272)
T 3qja_A 205 RIAPGLP-SSVIRIAESGVRGTADLLAYAGAGADAVLVG 242 (272)
T ss_dssp HHGGGSC-TTSEEEEESCCCSHHHHHHHHHTTCSEEEEC
T ss_pred HHHHhCc-ccCEEEEECCCCCHHHHHHHHHcCCCEEEEc
Confidence 7765432 2678888877777889999999999999874
No 154
>2lci_A Protein OR36; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}
Probab=74.40 E-value=11 Score=25.66 Aligned_cols=27 Identities=19% Similarity=0.150 Sum_probs=13.6
Q ss_pred EEEEEeCCHHHHHHHHHHHhhcCCEEE
Q 026776 31 HVLAVDDSFVDRKVIERLLTISSCKVT 57 (233)
Q Consensus 31 ~ILIVddd~~~~~~l~~~L~~~g~~v~ 57 (233)
+|||+.++......+-+++...||.|.
T Consensus 53 kiliisndkqllkemlelisklgykvf 79 (134)
T 2lci_A 53 KILIISNDKQLLKEMLELISKLGYKVF 79 (134)
T ss_dssp CEEEEESCHHHHHHHHHHHHHHTCCEE
T ss_pred eEEEEcCcHHHHHHHHHHHHHhCceeE
Confidence 355555555444444444455555443
No 155
>4h08_A Putative hydrolase; GDSL-like lipase/acylhydrolase family protein, structural GE joint center for structural genomics, JCSG; HET: GOL; 1.80A {Bacteroides thetaiotaomicron}
Probab=74.29 E-value=19 Score=27.03 Aligned_cols=88 Identities=18% Similarity=0.232 Sum_probs=48.8
Q ss_pred CCCCCcEEEEEeCCHHH--HHHHHHHHhhcCCEEEEE----C-CHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCCCC
Q 026776 25 SDTEEVHVLAVDDSFVD--RKVIERLLTISSCKVTAV----D-SGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGM 97 (233)
Q Consensus 25 ~~~~~~~ILIVddd~~~--~~~l~~~L~~~g~~v~~a----~-~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp~~ 97 (233)
...+..+|+++.|+-.. ...+++.|.... .|... . +....++.+... +...+||+|++.+...+.
T Consensus 16 ~~~~~prVl~iGDSit~G~~~~l~~~l~~~~-~v~~~~~~~~~~~~~~~~~~~~~-------~~~~~pd~Vvi~~G~ND~ 87 (200)
T 4h08_A 16 NKTDLPHVLLIGNSITRGYYGKVEAALKEKA-YVGRLSNSKSVGDPALIEELAVV-------LKNTKFDVIHFNNGLHGF 87 (200)
T ss_dssp TCCSSCEEEEEESHHHHHHHHHHHHHTTTTC-EEEEEEESCCTTCHHHHHHHHHH-------HHHSCCSEEEECCCSSCT
T ss_pred ccCCCCeEEEEchhHHhhhHHHHHHHhccCC-eEEEEeccCCccHHHHHHHHHHH-------HhcCCCCeEEEEeeeCCC
Confidence 34455799999998553 234555554432 33221 1 122233333110 023579999997766654
Q ss_pred C---------HHHHHHHHhccCCCCCCcEEEEeC
Q 026776 98 T---------GYELLKKIKDSSALREIPVVIMSS 122 (233)
Q Consensus 98 ~---------g~~ll~~Lr~~~~~~~~piIvlt~ 122 (233)
. --++++.+|+..+ ..+||+++.
T Consensus 88 ~~~~~~~~~~l~~ii~~l~~~~p--~~~ii~~~~ 119 (200)
T 4h08_A 88 DYTEEEYDKSFPKLIKIIRKYAP--KAKLIWANT 119 (200)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHCT--TCEEEEECC
T ss_pred CCCHHHHHHHHHHHHHHHhhhCC--CccEEEecc
Confidence 2 1346677777655 777777764
No 156
>1xm3_A Thiazole biosynthesis protein THIG; structural genomics, protein structure initiative, PSI, NESG, northeast structural genomics consortium; 1.80A {Bacillus subtilis} SCOP: c.1.31.1 PDB: 1tyg_A
Probab=73.78 E-value=6.7 Score=31.95 Aligned_cols=42 Identities=19% Similarity=0.237 Sum_probs=34.8
Q ss_pred HHHHHHHHhccCCCCCCcEEEEeCCCcHHHHHHHHHcCCceEEeC
Q 026776 99 GYELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVK 143 (233)
Q Consensus 99 g~~ll~~Lr~~~~~~~~piIvlt~~~~~~~~~~al~~Ga~dyL~K 143 (233)
+.+.++++++. . .+|+++..+-.+.+.+.+++++||++++.=
T Consensus 166 ~~~~l~~i~~~-~--~iPviv~gGI~t~eda~~~~~~GAdgViVG 207 (264)
T 1xm3_A 166 NPLNLSFIIEQ-A--KVPVIVDAGIGSPKDAAYAMELGADGVLLN 207 (264)
T ss_dssp CHHHHHHHHHH-C--SSCBEEESCCCSHHHHHHHHHTTCSEEEES
T ss_pred CHHHHHHHHhc-C--CCCEEEEeCCCCHHHHHHHHHcCCCEEEEc
Confidence 47888999874 2 789998887777888999999999998764
No 157
>4ew6_A D-galactose-1-dehydrogenase protein; nysgrc, PSI-biology, structural genomics, NEW YORK structura genomics research consortium, two domain; 2.30A {Rhizobium etli}
Probab=73.50 E-value=19 Score=30.02 Aligned_cols=109 Identities=17% Similarity=0.181 Sum_probs=61.5
Q ss_pred CCCCCCCCCcEEEEEeCCHHHH-HHHHHHHhhcCCEEEEECCHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCCCCCH
Q 026776 21 DLSPSDTEEVHVLAVDDSFVDR-KVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTG 99 (233)
Q Consensus 21 ~~~~~~~~~~~ILIVddd~~~~-~~l~~~L~~~g~~v~~a~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp~~~g 99 (233)
++....++++||.||.--..-+ ..+..+....++++..+.+.. ...+.+-.. .+-
T Consensus 17 ~~~~~~M~~~rvgiiG~G~ig~~~~~~~l~~~~~~~lvav~d~~------------------~~~~g~~~~------~~~ 72 (330)
T 4ew6_A 17 NLYFQSMSPINLAIVGVGKIVRDQHLPSIAKNANFKLVATASRH------------------GTVEGVNSY------TTI 72 (330)
T ss_dssp --CCCCCCCEEEEEECCSHHHHHTHHHHHHHCTTEEEEEEECSS------------------CCCTTSEEE------SSH
T ss_pred hhccccCCCceEEEEecCHHHHHHHHHHHHhCCCeEEEEEEeCC------------------hhhcCCCcc------CCH
Confidence 4555567889999999876655 344444443467766554321 011111111 122
Q ss_pred HHHHHHHhccCCCCCCcEEEEeCCC--cHHHHHHHHHcCCceEEeCCC--CHHHHHHHHHHHhh
Q 026776 100 YELLKKIKDSSALREIPVVIMSSEN--ILARIDRCLEDGAEDFIVKPV--KLSDVKRIKDYLTR 159 (233)
Q Consensus 100 ~~ll~~Lr~~~~~~~~piIvlt~~~--~~~~~~~al~~Ga~dyL~KP~--~~~eL~~~~~~l~~ 159 (233)
-+++.. .+ .+-+|+++... ..+.+..|+++|..=|+.||+ +.++..++++...+
T Consensus 73 ~~ll~~----~~--~vD~V~i~tp~~~H~~~~~~al~aGkhVl~EKP~a~~~~e~~~l~~~a~~ 130 (330)
T 4ew6_A 73 EAMLDA----EP--SIDAVSLCMPPQYRYEAAYKALVAGKHVFLEKPPGATLSEVADLEALANK 130 (330)
T ss_dssp HHHHHH----CT--TCCEEEECSCHHHHHHHHHHHHHTTCEEEECSSSCSSHHHHHHHHHHHHH
T ss_pred HHHHhC----CC--CCCEEEEeCCcHHHHHHHHHHHHcCCcEEEeCCCCCCHHHHHHHHHHHHh
Confidence 233322 01 44455555443 356778899999999999996 56677666665554
No 158
>2gjl_A Hypothetical protein PA1024; 2-nitropropane dioxygenase, 2-nitropropane, FMN, oxidoreduct; HET: FMN; 2.00A {Pseudomonas aeruginosa PAO1} PDB: 2gjn_A*
Probab=73.32 E-value=38 Score=28.06 Aligned_cols=79 Identities=22% Similarity=0.202 Sum_probs=51.4
Q ss_pred HhhcCCEEEE-ECCHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCC----C---CCHHHHHHHHhccCCCCCCcEEEE
Q 026776 49 LTISSCKVTA-VDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMP----G---MTGYELLKKIKDSSALREIPVVIM 120 (233)
Q Consensus 49 L~~~g~~v~~-a~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp----~---~~g~~ll~~Lr~~~~~~~~piIvl 120 (233)
++..|..+.. +.+.+++.... ....|.|+++-.-. + ...+++++++++.. ++|||+-
T Consensus 114 l~~~gi~vi~~v~t~~~a~~~~------------~~GaD~i~v~g~~~GG~~G~~~~~~~~~l~~v~~~~---~iPviaa 178 (328)
T 2gjl_A 114 FRRHGVKVIHKCTAVRHALKAE------------RLGVDAVSIDGFECAGHPGEDDIPGLVLLPAAANRL---RVPIIAS 178 (328)
T ss_dssp HHHTTCEEEEEESSHHHHHHHH------------HTTCSEEEEECTTCSBCCCSSCCCHHHHHHHHHTTC---CSCEEEE
T ss_pred HHHcCCCEEeeCCCHHHHHHHH------------HcCCCEEEEECCCCCcCCCCccccHHHHHHHHHHhc---CCCEEEE
Confidence 3444543332 55666665543 23478888853211 1 25678888888642 7899887
Q ss_pred eCCCcHHHHHHHHHcCCceEEe
Q 026776 121 SSENILARIDRCLEDGAEDFIV 142 (233)
Q Consensus 121 t~~~~~~~~~~al~~Ga~dyL~ 142 (233)
.+-.+.+.+.+++..|++.+..
T Consensus 179 GGI~~~~~v~~al~~GAdgV~v 200 (328)
T 2gjl_A 179 GGFADGRGLVAALALGADAINM 200 (328)
T ss_dssp SSCCSHHHHHHHHHHTCSEEEE
T ss_pred CCCCCHHHHHHHHHcCCCEEEE
Confidence 7776778888999999998864
No 159
>1dxe_A 2-dehydro-3-deoxy-galactarate aldolase; class II aldolase; 1.8A {Escherichia coli} SCOP: c.1.12.5 PDB: 1dxf_A
Probab=73.15 E-value=34 Score=27.43 Aligned_cols=76 Identities=12% Similarity=0.025 Sum_probs=49.2
Q ss_pred CCCcccEEEEcCCCCCCCHHHHHHHHhccCCCCCCcEEEEeCCCcHHHHHHHHHcCCceEEe-CCCCHHHHHHHHHHH
Q 026776 81 DGLKVDLIITDYCMPGMTGYELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIV-KPVKLSDVKRIKDYL 157 (233)
Q Consensus 81 ~~~~~DlvllD~~mp~~~g~~ll~~Lr~~~~~~~~piIvlt~~~~~~~~~~al~~Ga~dyL~-KP~~~~eL~~~~~~l 157 (233)
....+|.|++|++-...+--++...++.... ...++++=+...+...+..+++.|+++++. |--+.+++.++.+.+
T Consensus 37 ~~~gaD~v~lDlEd~p~~~~~a~~~~~~~~~-~~~~~~VRv~~~~~~~i~~~l~~g~~gI~~P~V~s~~ev~~~~~~~ 113 (256)
T 1dxe_A 37 GLAGFDWLVLDGEHAPNDISTFIPQLMALKG-SASAPVVRVPTNEPVIIKRLLDIGFYNFLIPFVETKEEAELAVAST 113 (256)
T ss_dssp TTSCCSEEEEESSSSSCCHHHHHHHHHHTTT-CSSEEEEECSSSCHHHHHHHHHTTCCEEEESCCCSHHHHHHHHHTT
T ss_pred HhCCCCEEEEcCCCCCCCHHHHHHHHHHHHh-CCCcEEEECCCCCHHHHHHHHhcCCceeeecCcCCHHHHHHHHHHh
Confidence 4557999999997654444444444443322 345666656666777788999999988644 445677786665554
No 160
>2oo3_A Protein involved in catabolism of external DNA; structural genomics, unknown function, PSI-2, protein structure initiative; 2.00A {Legionella pneumophila subsp} SCOP: c.66.1.59
Probab=72.63 E-value=7.2 Score=32.31 Aligned_cols=71 Identities=15% Similarity=0.032 Sum_probs=47.4
Q ss_pred CcEEEEEeCCHHHHHHHHHHHhhcCCEEEEECCHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCCC-CCHHHHHHHHh
Q 026776 29 EVHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPG-MTGYELLKKIK 107 (233)
Q Consensus 29 ~~~ILIVddd~~~~~~l~~~L~~~g~~v~~a~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp~-~~g~~ll~~Lr 107 (233)
.-++.+||-++.....|++.++...-..+...|+..++..+.. ...++|+||+|---.. .+...+++.|.
T Consensus 113 ~d~~vfvE~~~~a~~~L~~Nl~~~~~~~V~~~D~~~~L~~l~~---------~~~~fdLVfiDPPYe~k~~~~~vl~~L~ 183 (283)
T 2oo3_A 113 QDRLYLCELHPTEYNFLLKLPHFNKKVYVNHTDGVSKLNALLP---------PPEKRGLIFIDPSYERKEEYKEIPYAIK 183 (283)
T ss_dssp TSEEEEECCSHHHHHHHTTSCCTTSCEEEECSCHHHHHHHHCS---------CTTSCEEEEECCCCCSTTHHHHHHHHHH
T ss_pred CCeEEEEeCCHHHHHHHHHHhCcCCcEEEEeCcHHHHHHHhcC---------CCCCccEEEECCCCCCCcHHHHHHHHHH
Confidence 3689999999999999998887644333445687788776621 1235899999964432 34445555554
Q ss_pred c
Q 026776 108 D 108 (233)
Q Consensus 108 ~ 108 (233)
+
T Consensus 184 ~ 184 (283)
T 2oo3_A 184 N 184 (283)
T ss_dssp H
T ss_pred H
Confidence 3
No 161
>4fo4_A Inosine 5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.03A {Vibrio cholerae o1 biovar el tor} PDB: 4ff0_A* 4hlv_A* 4fez_A
Probab=72.44 E-value=45 Score=28.48 Aligned_cols=102 Identities=17% Similarity=0.153 Sum_probs=61.5
Q ss_pred cEEEEEe----CCHHHHHHHHHHHhhc-CCEEE--EECCHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCC-------
Q 026776 30 VHVLAVD----DSFVDRKVIERLLTIS-SCKVT--AVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMP------- 95 (233)
Q Consensus 30 ~~ILIVd----dd~~~~~~l~~~L~~~-g~~v~--~a~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp------- 95 (233)
..++++| ......+.++.+-+.. +..+. .+.+.+++..... ...|.|.+.+.-.
T Consensus 121 vd~I~idta~G~~~~~~~~I~~ik~~~p~v~Vi~G~v~t~e~A~~a~~------------aGAD~I~vG~gpGs~~~tr~ 188 (366)
T 4fo4_A 121 VDVLLIDSSHGHSEGVLQRIRETRAAYPHLEIIGGNVATAEGARALIE------------AGVSAVKVGIGPGSICTTRI 188 (366)
T ss_dssp CSEEEEECSCTTSHHHHHHHHHHHHHCTTCEEEEEEECSHHHHHHHHH------------HTCSEEEECSSCSTTBCHHH
T ss_pred CCEEEEeCCCCCCHHHHHHHHHHHHhcCCCceEeeeeCCHHHHHHHHH------------cCCCEEEEecCCCCCCCccc
Confidence 4566665 2344444455444444 44443 3678888877652 2468888732211
Q ss_pred ----CCCHHHHHHHHhccCCCCCCcEEEEeCCCcHHHHHHHHHcCCceEEeC
Q 026776 96 ----GMTGYELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVK 143 (233)
Q Consensus 96 ----~~~g~~ll~~Lr~~~~~~~~piIvlt~~~~~~~~~~al~~Ga~dyL~K 143 (233)
+...++++..+.+......+|||.--+-.+...+.+++.+||+.+..=
T Consensus 189 ~~g~g~p~~~~l~~v~~~~~~~~iPVIA~GGI~~~~di~kala~GAd~V~vG 240 (366)
T 4fo4_A 189 VTGVGVPQITAIADAAGVANEYGIPVIADGGIRFSGDISKAIAAGASCVMVG 240 (366)
T ss_dssp HHCCCCCHHHHHHHHHHHHGGGTCCEEEESCCCSHHHHHHHHHTTCSEEEES
T ss_pred ccCcccchHHHHHHHHHHHhhcCCeEEEeCCCCCHHHHHHHHHcCCCEEEEC
Confidence 123455666665321112689988777777888999999999988654
No 162
>2xci_A KDO-transferase, 3-deoxy-D-manno-2-octulosonic acid transferase; KDTA, GSEA, glycosyltransferase superfamily B,; HET: PG4; 2.00A {Aquifex aeolicus} PDB: 2xcu_A*
Probab=72.14 E-value=13 Score=31.55 Aligned_cols=68 Identities=13% Similarity=0.070 Sum_probs=34.9
Q ss_pred ccEEEEcCCCCCCCHHHHHHHHhccCCCCCCcEEEEeCCCcHHHHHHH-HHcCCceEEeCCCCHHHHHHHHHHHhhh
Q 026776 85 VDLIITDYCMPGMTGYELLKKIKDSSALREIPVVIMSSENILARIDRC-LEDGAEDFIVKPVKLSDVKRIKDYLTRD 160 (233)
Q Consensus 85 ~DlvllD~~mp~~~g~~ll~~Lr~~~~~~~~piIvlt~~~~~~~~~~a-l~~Ga~dyL~KP~~~~eL~~~~~~l~~~ 160 (233)
.|++++--..-+..|..+++.+-. .+|+|.-+......+..+. .+.| ++..+-+.++|.+.+..+...
T Consensus 278 aDv~vl~ss~~e~gg~~~lEAmA~-----G~PVI~~~~~~~~~e~~~~~~~~G---~l~~~~d~~~La~ai~~ll~d 346 (374)
T 2xci_A 278 GKIAIVGGTFVNIGGHNLLEPTCW-----GIPVIYGPYTHKVNDLKEFLEKEG---AGFEVKNETELVTKLTELLSV 346 (374)
T ss_dssp EEEEEECSSSSSSCCCCCHHHHTT-----TCCEEECSCCTTSHHHHHHHHHTT---CEEECCSHHHHHHHHHHHHHS
T ss_pred CCEEEECCcccCCCCcCHHHHHHh-----CCCEEECCCccChHHHHHHHHHCC---CEEEeCCHHHHHHHHHHHHhH
Confidence 577666221112223344555432 7788742222222333222 3444 566677888998777776654
No 163
>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}
Probab=71.67 E-value=24 Score=24.91 Aligned_cols=106 Identities=17% Similarity=0.197 Sum_probs=54.5
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhcCCEEEEECCHHHHHHHhhhhhhh----------hccCCCCCcccEEEEcCCCCCCCH
Q 026776 30 VHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQ----------SINGFDGLKVDLIITDYCMPGMTG 99 (233)
Q Consensus 30 ~~ILIVddd~~~~~~l~~~L~~~g~~v~~a~~~~~al~~l~~~~~~----------~~~~~~~~~~DlvllD~~mp~~~g 99 (233)
.+|+|+.-.. +...+...|...|++|...+...+.++.+...+.. ....+.-...|+||+-.. .+..-
T Consensus 7 ~~v~I~G~G~-iG~~la~~L~~~g~~V~~id~~~~~~~~~~~~~~~~~~gd~~~~~~l~~~~~~~~d~vi~~~~-~~~~n 84 (141)
T 3llv_A 7 YEYIVIGSEA-AGVGLVRELTAAGKKVLAVDKSKEKIELLEDEGFDAVIADPTDESFYRSLDLEGVSAVLITGS-DDEFN 84 (141)
T ss_dssp CSEEEECCSH-HHHHHHHHHHHTTCCEEEEESCHHHHHHHHHTTCEEEECCTTCHHHHHHSCCTTCSEEEECCS-CHHHH
T ss_pred CEEEEECCCH-HHHHHHHHHHHCCCeEEEEECCHHHHHHHHHCCCcEEECCCCCHHHHHhCCcccCCEEEEecC-CHHHH
Confidence 4677777654 55666666777787777766555544443221110 000011235687877543 11123
Q ss_pred HHHHHHHhccCCCCCCcEEEEeCCCcHHHHHHHHHcCCceEEe
Q 026776 100 YELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIV 142 (233)
Q Consensus 100 ~~ll~~Lr~~~~~~~~piIvlt~~~~~~~~~~al~~Ga~dyL~ 142 (233)
..++..+++.. ...+|+..... .......+.|++..+.
T Consensus 85 ~~~~~~a~~~~---~~~iia~~~~~--~~~~~l~~~G~~~vi~ 122 (141)
T 3llv_A 85 LKILKALRSVS---DVYAIVRVSSP--KKKEEFEEAGANLVVL 122 (141)
T ss_dssp HHHHHHHHHHC---CCCEEEEESCG--GGHHHHHHTTCSEEEE
T ss_pred HHHHHHHHHhC---CceEEEEEcCh--hHHHHHHHcCCCEEEC
Confidence 44455555543 34555555443 3344566788875554
No 164
>3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus anthracis} PDB: 3tsd_A* 3tsb_A*
Probab=71.63 E-value=56 Score=29.19 Aligned_cols=45 Identities=13% Similarity=0.163 Sum_probs=31.6
Q ss_pred HHHHHHHHhccCCCCCCcEEEEeCCCcHHHHHHHHHcCCceEEeC
Q 026776 99 GYELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVK 143 (233)
Q Consensus 99 g~~ll~~Lr~~~~~~~~piIvlt~~~~~~~~~~al~~Ga~dyL~K 143 (233)
.++++..+.+......+|||+-.+-.+..++.+++.+||+..+.=
T Consensus 344 ~~~~l~~v~~~~~~~~iPVIa~GGI~~~~di~kala~GA~~V~vG 388 (511)
T 3usb_A 344 QLTAVYDCATEARKHGIPVIADGGIKYSGDMVKALAAGAHVVMLG 388 (511)
T ss_dssp HHHHHHHHHHHHHTTTCCEEEESCCCSHHHHHHHHHTTCSEEEES
T ss_pred cHHHHHHHHHHHHhCCCcEEEeCCCCCHHHHHHHHHhCchhheec
Confidence 345555543322112689998777778899999999999998654
No 165
>1q7r_A Predicted amidotransferase; structural genomics, YAAE, PDX2, predicted glutamine amidotransferase, PSI; HET: MSE; 1.90A {Geobacillus stearothermophilus} SCOP: c.23.16.1
Probab=71.56 E-value=6.4 Score=30.88 Aligned_cols=51 Identities=10% Similarity=-0.053 Sum_probs=27.1
Q ss_pred eeeeccccccCCCCCCCCCcEEEEEeCCHHHHHHHHHHHhhcCCEEEEECCH
Q 026776 11 RLISDEIDGFDLSPSDTEEVHVLAVDDSFVDRKVIERLLTISSCKVTAVDSG 62 (233)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~ILIVddd~~~~~~l~~~L~~~g~~v~~a~~~ 62 (233)
|++++-++.+...+..+.+++|+|++........ ...|+..|+++..+...
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~~I~il~~~~~~~~~-~~~l~~~G~~~~~~~~~ 55 (219)
T 1q7r_A 5 HHHSSGVDLGTENLYFQSNMKIGVLGLQGAVREH-VRAIEACGAEAVIVKKS 55 (219)
T ss_dssp -------------CCCCCCCEEEEESCGGGCHHH-HHHHHHTTCEEEEECSG
T ss_pred cccccccccCCCCCCCCCCCEEEEEeCCCCcHHH-HHHHHHCCCEEEEECCH
Confidence 4566777777777766778999999764434443 36677789988888763
No 166
>4had_A Probable oxidoreductase protein; structural genomics, protein structure initiative, nysgrc, PSI-biology; 2.00A {Rhizobium etli}
Probab=71.07 E-value=14 Score=30.74 Aligned_cols=108 Identities=16% Similarity=0.209 Sum_probs=60.5
Q ss_pred CCCcEEEEEeCCHHHHHHHHHHHhhc-CCEEEEE-C-CHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCCCCCHHHHH
Q 026776 27 TEEVHVLAVDDSFVDRKVIERLLTIS-SCKVTAV-D-SGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELL 103 (233)
Q Consensus 27 ~~~~~ILIVddd~~~~~~l~~~L~~~-g~~v~~a-~-~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp~~~g~~ll 103 (233)
.+.+||-||.--..-+......++.. +++++.+ + +.+.+-+... .....-++-|+ -++
T Consensus 21 ~~mirigiIG~G~ig~~~~~~~~~~~~~~~lvav~d~~~~~a~~~a~-----------~~g~~~~y~d~-------~el- 81 (350)
T 4had_A 21 QSMLRFGIISTAKIGRDNVVPAIQDAENCVVTAIASRDLTRAREMAD-----------RFSVPHAFGSY-------EEM- 81 (350)
T ss_dssp -CCEEEEEESCCHHHHHTHHHHHHHCSSEEEEEEECSSHHHHHHHHH-----------HHTCSEEESSH-------HHH-
T ss_pred cCccEEEEEcChHHHHHHHHHHHHhCCCeEEEEEECCCHHHHHHHHH-----------HcCCCeeeCCH-------HHH-
Confidence 34589999998766555444455544 6777654 3 3333333221 11111122221 122
Q ss_pred HHHhccCCCCCCcEEEEeCCC--cHHHHHHHHHcCCceEEeCCCC--HHHHHHHHHHHhh
Q 026776 104 KKIKDSSALREIPVVIMSSEN--ILARIDRCLEDGAEDFIVKPVK--LSDVKRIKDYLTR 159 (233)
Q Consensus 104 ~~Lr~~~~~~~~piIvlt~~~--~~~~~~~al~~Ga~dyL~KP~~--~~eL~~~~~~l~~ 159 (233)
|.. + .+-+|+++... ..+.+..|+++|..=|+.||+. .++..++++...+
T Consensus 82 --l~~--~--~iDaV~I~tP~~~H~~~~~~al~aGkhVl~EKPla~~~~ea~~l~~~a~~ 135 (350)
T 4had_A 82 --LAS--D--VIDAVYIPLPTSQHIEWSIKAADAGKHVVCEKPLALKAGDIDAVIAARDR 135 (350)
T ss_dssp --HHC--S--SCSEEEECSCGGGHHHHHHHHHHTTCEEEECSCCCSSGGGGHHHHHHHHH
T ss_pred --hcC--C--CCCEEEEeCCCchhHHHHHHHHhcCCEEEEeCCcccchhhHHHHHHHHHH
Confidence 222 1 45555555443 3577889999999999999964 5566666655544
No 167
>3tqv_A Nicotinate-nucleotide pyrophosphorylase; glycosyltransferase, transferase; 2.62A {Francisella tularensis subsp}
Probab=70.74 E-value=18 Score=30.00 Aligned_cols=70 Identities=11% Similarity=0.145 Sum_probs=48.5
Q ss_pred ccEEEE-cCCCCCCCH-HHHHHHHhccCCCCCCcEEEEeCCCcHHHHHHHHHcCCceEEeCCCCHHHHHHHHHHHh
Q 026776 85 VDLIIT-DYCMPGMTG-YELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVKLSDVKRIKDYLT 158 (233)
Q Consensus 85 ~Dlvll-D~~mp~~~g-~~ll~~Lr~~~~~~~~piIvlt~~~~~~~~~~al~~Ga~dyL~KP~~~~eL~~~~~~l~ 158 (233)
+|.|++ |-++--..| -+.++..|+..+ ..+|.+-.. +.+++.+++++|+|..++..++++++.++++.+.
T Consensus 169 ~d~vlikdNHi~~~G~i~~Av~~ar~~~~--~~~IeVEv~--tl~ea~eAl~aGaD~I~LDn~~~~~l~~av~~~~ 240 (287)
T 3tqv_A 169 FDAYLIKENHIRSAGGIAKAVTKAKKLDS--NKVVEVEVT--NLDELNQAIAAKADIVMLDNFSGEDIDIAVSIAR 240 (287)
T ss_dssp SSSEEECTTTC----CHHHHHHHHHHHCT--TSCEEEEES--SHHHHHHHHHTTCSEEEEESCCHHHHHHHHHHHT
T ss_pred ccEEEEeHHHHHHhCCHHHHHHHHHhhCC--CCcEEEEeC--CHHHHHHHHHcCCCEEEEcCCCHHHHHHHHHhhc
Confidence 456666 433332222 466777777644 667777554 3477889999999999999999999988887764
No 168
>3u3x_A Oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.79A {Sinorhizobium meliloti}
Probab=70.66 E-value=24 Score=29.78 Aligned_cols=108 Identities=13% Similarity=0.159 Sum_probs=58.9
Q ss_pred CCCcEEEEEeCCHHHHHHHHHHHhhcCCEEEEEC--CHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCCCCCHHHHHH
Q 026776 27 TEEVHVLAVDDSFVDRKVIERLLTISSCKVTAVD--SGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLK 104 (233)
Q Consensus 27 ~~~~~ILIVddd~~~~~~l~~~L~~~g~~v~~a~--~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp~~~g~~ll~ 104 (233)
+++++|.||.--..-...+...+...++++..+. +.+.+-+... .....-+.- +- +
T Consensus 24 m~~irvgiiG~G~~~~~~~~~~~~~~~~~lvav~d~~~~~a~~~a~-----------~~~~~~~~~-------~~----~ 81 (361)
T 3u3x_A 24 MDELRFAAVGLNHNHIYGQVNCLLRAGARLAGFHEKDDALAAEFSA-----------VYADARRIA-------TA----E 81 (361)
T ss_dssp --CCEEEEECCCSTTHHHHHHHHHHTTCEEEEEECSCHHHHHHHHH-----------HSSSCCEES-------CH----H
T ss_pred ccCcEEEEECcCHHHHHHHHHHhhcCCcEEEEEEcCCHHHHHHHHH-----------HcCCCcccC-------CH----H
Confidence 4678999998654443444455556778776543 3333332221 111001111 11 2
Q ss_pred HHhccCCCCCCcEEEEeCCC--cHHHHHHHHHcCCceEEeCCC--CHHHHHHHHHHHhh
Q 026776 105 KIKDSSALREIPVVIMSSEN--ILARIDRCLEDGAEDFIVKPV--KLSDVKRIKDYLTR 159 (233)
Q Consensus 105 ~Lr~~~~~~~~piIvlt~~~--~~~~~~~al~~Ga~dyL~KP~--~~~eL~~~~~~l~~ 159 (233)
.+-+. + .+-+|+++... ..+.+..|+++|..=|+.||+ +.++..++++...+
T Consensus 82 ~ll~~-~--~vD~V~I~tp~~~H~~~~~~al~aGkhVl~EKPla~~~~ea~~l~~~a~~ 137 (361)
T 3u3x_A 82 EILED-E--NIGLIVSAAVSSERAELAIRAMQHGKDVLVDKPGMTSFDQLAKLRRVQAE 137 (361)
T ss_dssp HHHTC-T--TCCEEEECCCHHHHHHHHHHHHHTTCEEEEESCSCSSHHHHHHHHHHHHT
T ss_pred HHhcC-C--CCCEEEEeCChHHHHHHHHHHHHCCCeEEEeCCCCCCHHHHHHHHHHHHH
Confidence 22221 1 45555555443 356778999999999999996 56667666665544
No 169
>4e38_A Keto-hydroxyglutarate-aldolase/keto-deoxy-phospho aldolase; lyase; 1.64A {Vibrionales bacterium swat-3}
Probab=70.05 E-value=18 Score=28.93 Aligned_cols=93 Identities=12% Similarity=0.045 Sum_probs=55.6
Q ss_pred HHHHhhcCC-EEEEECCHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCCCCCHHHHHHHHhccCCCCCCcEEEEeCCC
Q 026776 46 ERLLTISSC-KVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKKIKDSSALREIPVVIMSSEN 124 (233)
Q Consensus 46 ~~~L~~~g~-~v~~a~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp~~~g~~ll~~Lr~~~~~~~~piIvlt~~~ 124 (233)
.+.|.+.+. -|....+.+++....+.- .....++|=+ .+-..++.+.++.+++..+ . .+|-...--
T Consensus 28 ~~~l~~~~vv~Vir~~~~~~a~~~a~al--------~~gGi~~iEv--t~~t~~a~e~I~~l~~~~~--~-~~iGaGTVl 94 (232)
T 4e38_A 28 NNQLKALKVIPVIAIDNAEDIIPLGKVL--------AENGLPAAEI--TFRSDAAVEAIRLLRQAQP--E-MLIGAGTIL 94 (232)
T ss_dssp HHHHHHHCEEEEECCSSGGGHHHHHHHH--------HHTTCCEEEE--ETTSTTHHHHHHHHHHHCT--T-CEEEEECCC
T ss_pred HHHHHhCCEEEEEEcCCHHHHHHHHHHH--------HHCCCCEEEE--eCCCCCHHHHHHHHHHhCC--C-CEEeECCcC
Confidence 344555553 455566777776665321 1123444444 4445679999999988643 4 344444445
Q ss_pred cHHHHHHHHHcCCceEEeCCCCHHHHHH
Q 026776 125 ILARIDRCLEDGAEDFIVKPVKLSDVKR 152 (233)
Q Consensus 125 ~~~~~~~al~~Ga~dyL~KP~~~~eL~~ 152 (233)
+.+.+..++++||+-.+ -|....++.+
T Consensus 95 t~~~a~~Ai~AGA~fIv-sP~~~~~vi~ 121 (232)
T 4e38_A 95 NGEQALAAKEAGATFVV-SPGFNPNTVR 121 (232)
T ss_dssp SHHHHHHHHHHTCSEEE-CSSCCHHHHH
T ss_pred CHHHHHHHHHcCCCEEE-eCCCCHHHHH
Confidence 68889999999998555 4644444433
No 170
>1zh8_A Oxidoreductase; TM0312, structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI; HET: MSE NAP; 2.50A {Thermotoga maritima} SCOP: c.2.1.3 d.81.1.5
Probab=69.75 E-value=36 Score=28.27 Aligned_cols=46 Identities=17% Similarity=0.269 Sum_probs=32.5
Q ss_pred CCcEEEEeCC--CcHHHHHHHHHcCCceEEeCCC--CHHHHHHHHHHHhh
Q 026776 114 EIPVVIMSSE--NILARIDRCLEDGAEDFIVKPV--KLSDVKRIKDYLTR 159 (233)
Q Consensus 114 ~~piIvlt~~--~~~~~~~~al~~Ga~dyL~KP~--~~~eL~~~~~~l~~ 159 (233)
.+-+|+++.. ...+.+..|+++|..=|+.||+ +.++..++++...+
T Consensus 82 ~vD~V~i~tp~~~H~~~~~~al~aGkhVl~EKPla~~~~ea~~l~~~a~~ 131 (340)
T 1zh8_A 82 LVDAVDLTLPVELNLPFIEKALRKGVHVICEKPISTDVETGKKVVELSEK 131 (340)
T ss_dssp CCSEEEECCCGGGHHHHHHHHHHTTCEEEEESSSSSSHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCchHHHHHHHHHHHCCCcEEEeCCCCCCHHHHHHHHHHHHH
Confidence 4445555443 3457788999999999999996 67777777666554
No 171
>1xi3_A Thiamine phosphate pyrophosphorylase; structural genomics, southeast collaboratory for structural genomics, hyperthermophIle; 1.70A {Pyrococcus furiosus} SCOP: c.1.3.1
Probab=68.95 E-value=27 Score=26.64 Aligned_cols=55 Identities=29% Similarity=0.428 Sum_probs=39.3
Q ss_pred cccEEEEcCCCCC-------CCHHHHHHHHhccCCCCCCcEEEEeCCCcHHHHHHHHHcCCceEEe
Q 026776 84 KVDLIITDYCMPG-------MTGYELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIV 142 (233)
Q Consensus 84 ~~DlvllD~~mp~-------~~g~~ll~~Lr~~~~~~~~piIvlt~~~~~~~~~~al~~Ga~dyL~ 142 (233)
.+|.|+++-..+. ..+++.++++++.. .+|+++..+-. .+.+.++++.|++.+..
T Consensus 128 g~d~i~~~~~~~~~~~~~~~~~~~~~l~~l~~~~---~~pvia~GGI~-~~nv~~~~~~Ga~gv~v 189 (215)
T 1xi3_A 128 GADYLGAGSVFPTKTKEDARVIGLEGLRKIVESV---KIPVVAIGGIN-KDNAREVLKTGVDGIAV 189 (215)
T ss_dssp TCSEEEEECSSCC----CCCCCHHHHHHHHHHHC---SSCEEEESSCC-TTTHHHHHTTTCSEEEE
T ss_pred CCCEEEEcCCccCCCCCCCCCcCHHHHHHHHHhC---CCCEEEECCcC-HHHHHHHHHcCCCEEEE
Confidence 4789998754442 35788899887643 67888765544 66777788999999854
No 172
>1fy2_A Aspartyl dipeptidase; serine protease, catalytic triad, strand-helix MO hydrolase; 1.20A {Salmonella typhimurium} SCOP: c.23.16.4 PDB: 1fye_A
Probab=67.59 E-value=29 Score=27.36 Aligned_cols=63 Identities=17% Similarity=0.219 Sum_probs=44.1
Q ss_pred CCcEEEEEeCC------HHHHHHHHHHHhhcCCEEEEE---CCHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCCCCC
Q 026776 28 EEVHVLAVDDS------FVDRKVIERLLTISSCKVTAV---DSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMT 98 (233)
Q Consensus 28 ~~~~ILIVddd------~~~~~~l~~~L~~~g~~v~~a---~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp~~~ 98 (233)
+..+|++|+-. ..+...+.+.|+..|+++... ++..+.++ ..|.|++ |+.+
T Consensus 30 ~~~~i~iI~~a~~~~~~~~~~~~~~~al~~lG~~~~~v~~~~d~~~~l~----------------~ad~I~l----pGG~ 89 (229)
T 1fy2_A 30 GRRSAVFIPFAGVTQTWDEYTDKTAEVLAPLGVNVTGIHRVADPLAAIE----------------KAEIIIV----GGGN 89 (229)
T ss_dssp TCCEEEEECTTCCSSCHHHHHHHHHHHHGGGTCEEEETTSSSCHHHHHH----------------HCSEEEE----CCSC
T ss_pred CCCeEEEEECCCCCCCHHHHHHHHHHHHHHCCCEEEEEeccccHHHHHh----------------cCCEEEE----CCCc
Confidence 35789999754 256677788899999988877 34333333 2588887 7888
Q ss_pred HHHHHHHHhccC
Q 026776 99 GYELLKKIKDSS 110 (233)
Q Consensus 99 g~~ll~~Lr~~~ 110 (233)
...+++.|++..
T Consensus 90 ~~~~~~~l~~~g 101 (229)
T 1fy2_A 90 TFQLLKESRERG 101 (229)
T ss_dssp HHHHHHHHHHTT
T ss_pred HHHHHHHHHHCC
Confidence 888888777543
No 173
>3f4w_A Putative hexulose 6 phosphate synthase; humps, malonate, lyase; 1.65A {Salmonella typhimurium} SCOP: c.1.2.0
Probab=67.02 E-value=10 Score=29.28 Aligned_cols=86 Identities=12% Similarity=0.080 Sum_probs=49.7
Q ss_pred HHHHHHHhhcCCEEEEE----CCHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCC----CCCHHHHHHHHhccCCCCC
Q 026776 43 KVIERLLTISSCKVTAV----DSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMP----GMTGYELLKKIKDSSALRE 114 (233)
Q Consensus 43 ~~l~~~L~~~g~~v~~a----~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp----~~~g~~ll~~Lr~~~~~~~ 114 (233)
..+.+.+++.|..+... .+..+.++.+ .....|.|.++.... ...+++.++++++... .
T Consensus 93 ~~~~~~~~~~g~~~~v~~~~~~t~~~~~~~~-----------~~~g~d~i~v~~g~~g~~~~~~~~~~i~~l~~~~~--~ 159 (211)
T 3f4w_A 93 QSCIRAAKEAGKQVVVDMICVDDLPARVRLL-----------EEAGADMLAVHTGTDQQAAGRKPIDDLITMLKVRR--K 159 (211)
T ss_dssp HHHHHHHHHHTCEEEEECTTCSSHHHHHHHH-----------HHHTCCEEEEECCHHHHHTTCCSHHHHHHHHHHCS--S
T ss_pred HHHHHHHHHcCCeEEEEecCCCCHHHHHHHH-----------HHcCCCEEEEcCCCcccccCCCCHHHHHHHHHHcC--C
Confidence 44555566667655532 3332333332 122367777652211 1135788888887533 6
Q ss_pred CcEEEEeCCCcHHHHHHHHHcCCceEEe
Q 026776 115 IPVVIMSSENILARIDRCLEDGAEDFIV 142 (233)
Q Consensus 115 ~piIvlt~~~~~~~~~~al~~Ga~dyL~ 142 (233)
+|+++-.+- ..+.+.+++++|++.++.
T Consensus 160 ~~i~~~gGI-~~~~~~~~~~~Gad~vvv 186 (211)
T 3f4w_A 160 ARIAVAGGI-SSQTVKDYALLGPDVVIV 186 (211)
T ss_dssp CEEEEESSC-CTTTHHHHHTTCCSEEEE
T ss_pred CcEEEECCC-CHHHHHHHHHcCCCEEEE
Confidence 777765444 366778889999999865
No 174
>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}
Probab=66.80 E-value=26 Score=23.44 Aligned_cols=90 Identities=23% Similarity=0.148 Sum_probs=51.5
Q ss_pred CcEEEEEeCCHHHHHHHHHHHhhcC-CEEEEECCHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCCCCCHHHHHHHHh
Q 026776 29 EVHVLAVDDSFVDRKVIERLLTISS-CKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKKIK 107 (233)
Q Consensus 29 ~~~ILIVddd~~~~~~l~~~L~~~g-~~v~~a~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp~~~g~~ll~~Lr 107 (233)
..+|+|+.- -.....+...|...| ++|..+....+.++.+. ......+..|+. +.-++.+.++
T Consensus 5 ~~~v~I~G~-G~iG~~~~~~l~~~g~~~v~~~~r~~~~~~~~~-----------~~~~~~~~~d~~----~~~~~~~~~~ 68 (118)
T 3ic5_A 5 RWNICVVGA-GKIGQMIAALLKTSSNYSVTVADHDLAALAVLN-----------RMGVATKQVDAK----DEAGLAKALG 68 (118)
T ss_dssp CEEEEEECC-SHHHHHHHHHHHHCSSEEEEEEESCHHHHHHHH-----------TTTCEEEECCTT----CHHHHHHHTT
T ss_pred cCeEEEECC-CHHHHHHHHHHHhCCCceEEEEeCCHHHHHHHH-----------hCCCcEEEecCC----CHHHHHHHHc
Confidence 468999998 667777777787788 88887765444444441 223455665553 2222333332
Q ss_pred ccCCCCCCcEEEEeCC-C-cHHHHHHHHHcCCceE
Q 026776 108 DSSALREIPVVIMSSE-N-ILARIDRCLEDGAEDF 140 (233)
Q Consensus 108 ~~~~~~~~piIvlt~~-~-~~~~~~~al~~Ga~dy 140 (233)
..-+|+.+.. . .......+.+.|+.-|
T Consensus 69 ------~~d~vi~~~~~~~~~~~~~~~~~~g~~~~ 97 (118)
T 3ic5_A 69 ------GFDAVISAAPFFLTPIIAKAAKAAGAHYF 97 (118)
T ss_dssp ------TCSEEEECSCGGGHHHHHHHHHHTTCEEE
T ss_pred ------CCCEEEECCCchhhHHHHHHHHHhCCCEE
Confidence 3344444432 2 3445566677787644
No 175
>3lab_A Putative KDPG (2-keto-3-deoxy-6-phosphogluconate) aldolase; unknown function, aldolase superfamily, class I aldolase, KDPG aldolase domain; 1.84A {Oleispira antarctica} PDB: 3vcr_A
Probab=66.28 E-value=33 Score=27.11 Aligned_cols=52 Identities=15% Similarity=0.244 Sum_probs=35.2
Q ss_pred CCCHHHHHHHHhccCCCCCCcEEEEeCCCcHHHHHHHHHcCCceEEeCCCCHHHHH
Q 026776 96 GMTGYELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVKLSDVK 151 (233)
Q Consensus 96 ~~~g~~ll~~Lr~~~~~~~~piIvlt~~~~~~~~~~al~~Ga~dyL~KP~~~~eL~ 151 (233)
.-++++.++.|++..+ . .+|-...--+.+.+..++++|++-.+. |....++.
T Consensus 48 t~~a~~~I~~l~~~~p--~-~~IGAGTVlt~~~a~~ai~AGA~fivs-P~~~~evi 99 (217)
T 3lab_A 48 TEAGLAAISAIKKAVP--E-AIVGAGTVCTADDFQKAIDAGAQFIVS-PGLTPELI 99 (217)
T ss_dssp STTHHHHHHHHHHHCT--T-SEEEEECCCSHHHHHHHHHHTCSEEEE-SSCCHHHH
T ss_pred CccHHHHHHHHHHHCC--C-CeEeeccccCHHHHHHHHHcCCCEEEe-CCCcHHHH
Confidence 4468888888887653 4 455555555788888999999985555 54444443
No 176
>3l0g_A Nicotinate-nucleotide pyrophosphorylase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography; 2.05A {Ehrlichia chaffeensis}
Probab=66.20 E-value=20 Score=29.86 Aligned_cols=70 Identities=10% Similarity=0.287 Sum_probs=49.9
Q ss_pred ccEEEE-cCCCCCC-CHHHHHHHHhccCCCCCCcEEEEeCCCcHHHHHHHHHcCCceEEeCCCCHHHHHHHHHHHh
Q 026776 85 VDLIIT-DYCMPGM-TGYELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVKLSDVKRIKDYLT 158 (233)
Q Consensus 85 ~Dlvll-D~~mp~~-~g~~ll~~Lr~~~~~~~~piIvlt~~~~~~~~~~al~~Ga~dyL~KP~~~~eL~~~~~~l~ 158 (233)
+|.|++ |-..--. +--+.++.+|+..+ ..+|.+-... .+++.+++++|+|-.++.-++++++.+++..+.
T Consensus 178 ~D~vLIKdNHi~~~G~i~~Av~~ar~~~p--~~kIeVEv~t--l~e~~eAl~aGaDiImLDn~s~~~l~~av~~~~ 249 (300)
T 3l0g_A 178 CDGVLIKDNHIASCGSITLAIQRLRKNLK--NEYIAIECDN--ISQVEESLSNNVDMILLDNMSISEIKKAVDIVN 249 (300)
T ss_dssp TSCEEECHHHHHHHSCHHHHHHHHHHHSS--SCCEEEEESS--HHHHHHHHHTTCSEEEEESCCHHHHHHHHHHHT
T ss_pred cceEEEcHhHHHHhCCHHHHHHHHHHhCC--CCCEEEEECC--HHHHHHHHHcCCCEEEECCCCHHHHHHHHHhhc
Confidence 466666 3221111 22466777777654 6788876654 578889999999999999999999998887765
No 177
>2bfw_A GLGA glycogen synthase; glycosyltransferase family 5 UDP/ADP-glucose-glycogen syntha rossman folds, transferase; 1.8A {Pyrococcus abyssi} SCOP: c.87.1.8
Probab=65.56 E-value=38 Score=24.97 Aligned_cols=106 Identities=11% Similarity=0.049 Sum_probs=66.3
Q ss_pred CcEEEEEeCCH-HHHHHHHHHHhhcCCEEEE-E--CCHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCCCCCHHHHHH
Q 026776 29 EVHVLAVDDSF-VDRKVIERLLTISSCKVTA-V--DSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLK 104 (233)
Q Consensus 29 ~~~ILIVddd~-~~~~~l~~~L~~~g~~v~~-a--~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp~~~g~~ll~ 104 (233)
.++++|+.+.. .....+..+++..+ .|.. . -+.++..+.+. ..|++|+-... +.-|..+++
T Consensus 70 ~~~l~i~G~~~~~~~~~l~~~~~~~~-~v~~~~g~~~~~~~~~~~~-------------~ad~~l~ps~~-e~~~~~~~E 134 (200)
T 2bfw_A 70 EMRFIIIGKGDPELEGWARSLEEKHG-NVKVITEMLSREFVRELYG-------------SVDFVIIPSYF-EPFGLVALE 134 (200)
T ss_dssp GEEEEEECCBCHHHHHHHHHHHHHCT-TEEEECSCCCHHHHHHHHT-------------TCSEEEECCSC-CSSCHHHHH
T ss_pred CeEEEEECCCChHHHHHHHHHHHhcC-CEEEEeccCCHHHHHHHHH-------------HCCEEEECCCC-CCccHHHHH
Confidence 57777777643 24556666766666 4444 3 34446555552 35888874433 344677777
Q ss_pred HHhccCCCCCCcEEEEeCCCcHHHHHHHHHcCCceEEeCCCCHHHHHHHHHHHhh
Q 026776 105 KIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVKLSDVKRIKDYLTR 159 (233)
Q Consensus 105 ~Lr~~~~~~~~piIvlt~~~~~~~~~~al~~Ga~dyL~KP~~~~eL~~~~~~l~~ 159 (233)
.+.. .+|+|+. ... ...+.+ .|-.+++..+.+.+++.+.+..+..
T Consensus 135 a~a~-----G~PvI~~-~~~---~~~e~~-~~~~g~~~~~~~~~~l~~~i~~l~~ 179 (200)
T 2bfw_A 135 AMCL-----GAIPIAS-AVG---GLRDII-TNETGILVKAGDPGELANAILKALE 179 (200)
T ss_dssp HHHT-----TCEEEEE-SCH---HHHHHC-CTTTCEEECTTCHHHHHHHHHHHHH
T ss_pred HHHC-----CCCEEEe-CCC---ChHHHc-CCCceEEecCCCHHHHHHHHHHHHh
Confidence 7754 6776654 322 233444 6788999999999999877766654
No 178
>1ka9_F Imidazole glycerol phosphtate synthase; riken structural genomics/proteomics initiative, RSGI, structural genomics, transferase; 2.30A {Thermus thermophilus} SCOP: c.1.2.1
Probab=65.56 E-value=18 Score=28.57 Aligned_cols=54 Identities=17% Similarity=0.254 Sum_probs=38.5
Q ss_pred EEEEcCCCCCCC---HHHHHHHHhccCCCCCCcEEEEeCCCcHHHHHHHHHcCCceEEeC
Q 026776 87 LIITDYCMPGMT---GYELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVK 143 (233)
Q Consensus 87 lvllD~~mp~~~---g~~ll~~Lr~~~~~~~~piIvlt~~~~~~~~~~al~~Ga~dyL~K 143 (233)
+.+.|....+.. .+++++.+++. ..+|+++...-.+.+.+.++++.|++.++.-
T Consensus 48 i~v~d~~~~~~~~~~~~~~i~~i~~~---~~iPvi~~Ggi~~~~~~~~~~~~Gad~V~lg 104 (252)
T 1ka9_F 48 LVFLDISATHEERAILLDVVARVAER---VFIPLTVGGGVRSLEDARKLLLSGADKVSVN 104 (252)
T ss_dssp EEEEECCSSTTCHHHHHHHHHHHHTT---CCSCEEEESSCCSHHHHHHHHHHTCSEEEEC
T ss_pred EEEEcCCccccCccccHHHHHHHHHh---CCCCEEEECCcCCHHHHHHHHHcCCCEEEEC
Confidence 345565543322 24567777754 2789999888888899999999999998764
No 179
>4gud_A Imidazole glycerol phosphate synthase subunit His; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE 1PE; 1.91A {Vibrio cholerae}
Probab=65.34 E-value=24 Score=27.04 Aligned_cols=35 Identities=11% Similarity=0.116 Sum_probs=27.7
Q ss_pred EEEEEeCCHHHHHHHHHHHhhcCCEEEEECCHHHH
Q 026776 31 HVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRA 65 (233)
Q Consensus 31 ~ILIVddd~~~~~~l~~~L~~~g~~v~~a~~~~~a 65 (233)
+|+|||=--.+...+.+.|+..|+++....+.++.
T Consensus 4 ~I~iiD~g~~n~~si~~al~~~G~~~~v~~~~~~l 38 (211)
T 4gud_A 4 NVVIIDTGCANISSVKFAIERLGYAVTISRDPQVV 38 (211)
T ss_dssp CEEEECCCCTTHHHHHHHHHHTTCCEEEECCHHHH
T ss_pred EEEEEECCCChHHHHHHHHHHCCCEEEEECCHHHH
Confidence 69999866556677888899999999888876543
No 180
>3inp_A D-ribulose-phosphate 3-epimerase; IDP02542, isomerase, struc genomics, center for structural genomics of infectious DISE csgid; 2.05A {Francisella tularensis subsp}
Probab=64.80 E-value=13 Score=29.95 Aligned_cols=60 Identities=17% Similarity=0.260 Sum_probs=41.4
Q ss_pred CHHHHHHHHhccCCCCCCcEEE-EeCCCcHHHHHHHHHcCCceEEeCCCCHHHHHHHHHHHhh
Q 026776 98 TGYELLKKIKDSSALREIPVVI-MSSENILARIDRCLEDGAEDFIVKPVKLSDVKRIKDYLTR 159 (233)
Q Consensus 98 ~g~~ll~~Lr~~~~~~~~piIv-lt~~~~~~~~~~al~~Ga~dyL~KP~~~~eL~~~~~~l~~ 159 (233)
-|..+++.||+..+ +.++.+ +.-..-..++..+.++||+.+..-......+.+.++.+.+
T Consensus 72 ~G~~~v~~lr~~~p--~~~ldvHLmv~~p~~~i~~~~~aGAd~itvH~Ea~~~~~~~i~~ir~ 132 (246)
T 3inp_A 72 FGPMVLKALRDYGI--TAGMDVHLMVKPVDALIESFAKAGATSIVFHPEASEHIDRSLQLIKS 132 (246)
T ss_dssp CCHHHHHHHHHHTC--CSCEEEEEECSSCHHHHHHHHHHTCSEEEECGGGCSCHHHHHHHHHT
T ss_pred cCHHHHHHHHHhCC--CCeEEEEEeeCCHHHHHHHHHHcCCCEEEEccccchhHHHHHHHHHH
Confidence 48899999998653 556655 4334445678888899999887766544556666666654
No 181
>3paj_A Nicotinate-nucleotide pyrophosphorylase, carboxyl; TIM barrel, pyridin dicarboxylate, 5-phospho-alpha-D-ribose 1-diphosphate; 2.00A {Vibrio cholerae o1 biovar el tor}
Probab=64.69 E-value=18 Score=30.48 Aligned_cols=55 Identities=15% Similarity=0.260 Sum_probs=43.0
Q ss_pred HHHHHHHhccCCCCCCcEEEEeCCCcHHHHHHHHHcCCceEEeCCCCHHHHHHHHHHHh
Q 026776 100 YELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVKLSDVKRIKDYLT 158 (233)
Q Consensus 100 ~~ll~~Lr~~~~~~~~piIvlt~~~~~~~~~~al~~Ga~dyL~KP~~~~eL~~~~~~l~ 158 (233)
.+.++..|+..+ ..+|.+.... .+++.+++++|+|...+..++++++.++++.+.
T Consensus 219 ~~Av~~ar~~~p--~~kIeVEVdt--ldea~eAl~aGaD~I~LDn~~~~~l~~av~~l~ 273 (320)
T 3paj_A 219 RQAISTAKQLNP--GKPVEVETET--LAELEEAISAGADIIMLDNFSLEMMREAVKINA 273 (320)
T ss_dssp HHHHHHHHHHST--TSCEEEEESS--HHHHHHHHHTTCSEEEEESCCHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCC--CCeEEEEECC--HHHHHHHHHcCCCEEEECCCCHHHHHHHHHHhC
Confidence 466777777655 5677776654 467788999999999999999999988887654
No 182
>4fb5_A Probable oxidoreductase protein; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium, GFO/IDH/MOCA family; 2.61A {Rhizobium etli}
Probab=64.14 E-value=15 Score=30.77 Aligned_cols=46 Identities=26% Similarity=0.336 Sum_probs=32.2
Q ss_pred CCcEEEEeCCC--cHHHHHHHHHcCCceEEeCCCC--HHHHHHHHHHHhh
Q 026776 114 EIPVVIMSSEN--ILARIDRCLEDGAEDFIVKPVK--LSDVKRIKDYLTR 159 (233)
Q Consensus 114 ~~piIvlt~~~--~~~~~~~al~~Ga~dyL~KP~~--~~eL~~~~~~l~~ 159 (233)
++-+|+++... ..+.+..|+++|..=|+.||+. .++..++++...+
T Consensus 94 ~iDaV~IatP~~~H~~~a~~al~aGkhVl~EKPla~~~~ea~~l~~~a~~ 143 (393)
T 4fb5_A 94 EVDVVSVTTPNQFHAEMAIAALEAGKHVWCEKPMAPAYADAERMLATAER 143 (393)
T ss_dssp TCCEEEECSCGGGHHHHHHHHHHTTCEEEECSCSCSSHHHHHHHHHHHHH
T ss_pred CCcEEEECCChHHHHHHHHHHHhcCCeEEEccCCcccHHHHHHhhhhHHh
Confidence 44455554433 4677889999999999999965 5566666666554
No 183
>1qpo_A Quinolinate acid phosphoribosyl transferase; type II prtase, de novo NAD biosynthesis, PRPP, phosphoribos transferase; 2.40A {Mycobacterium tuberculosis H37RV} SCOP: c.1.17.1 d.41.2.1 PDB: 1qpn_A 1qpq_A* 1qpr_A*
Probab=63.77 E-value=27 Score=28.79 Aligned_cols=94 Identities=15% Similarity=0.103 Sum_probs=55.7
Q ss_pred EEEEeCCHHHH----HHHHHHHhhcC--CEEEEECCHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCCCCCHHHHHHH
Q 026776 32 VLAVDDSFVDR----KVIERLLTISS--CKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKK 105 (233)
Q Consensus 32 ILIVddd~~~~----~~l~~~L~~~g--~~v~~a~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp~~~g~~ll~~ 105 (233)
+||-|++-... ..++..-+..+ .....+.+.+++.+.+. ...|+|++|- |...+-.++.+.
T Consensus 168 vlikdnHi~~ag~i~~av~~ar~~~~~~~I~Vev~t~eea~eal~------------aGaD~I~LDn-~~~~~~~~~v~~ 234 (284)
T 1qpo_A 168 ALIKDNHVAAAGSVVDALRAVRNAAPDLPCEVEVDSLEQLDAVLP------------EKPELILLDN-FAVWQTQTAVQR 234 (284)
T ss_dssp EEECHHHHHHHSSHHHHHHHHHHHCTTSCEEEEESSHHHHHHHGG------------GCCSEEEEET-CCHHHHHHHHHH
T ss_pred hcccHhHHHHcCCHHHHHHHHHHhCCCCCEEEEeCCHHHHHHHHH------------cCCCEEEECC-CCHHHHHHHHHH
Confidence 66666554332 23333322233 33446778888888773 3579999996 332233345555
Q ss_pred HhccCCCCCCcEEEEeCCCcHHHHHHHHHcCCceEE
Q 026776 106 IKDSSALREIPVVIMSSENILARIDRCLEDGAEDFI 141 (233)
Q Consensus 106 Lr~~~~~~~~piIvlt~~~~~~~~~~al~~Ga~dyL 141 (233)
++...+ + ..|..++.-+.+.+.+..+.|+|.|.
T Consensus 235 l~~~~~--~-v~ieaSGGIt~~~i~~~a~tGVD~is 267 (284)
T 1qpo_A 235 RDSRAP--T-VMLESSGGLSLQTAATYAETGVDYLA 267 (284)
T ss_dssp HHHHCT--T-CEEEEESSCCTTTHHHHHHTTCSEEE
T ss_pred hhccCC--C-eEEEEECCCCHHHHHHHHhcCCCEEE
Confidence 554322 3 35556777677888888899988765
No 184
>1rd5_A Tryptophan synthase alpha chain, chloroplast; hydroxamic acid, diboa, dimboa, indole, indole-glycerol-PHOS lyase; 2.02A {Zea mays} SCOP: c.1.2.4 PDB: 1tjr_A
Probab=63.58 E-value=12 Score=30.04 Aligned_cols=57 Identities=18% Similarity=0.243 Sum_probs=37.4
Q ss_pred HHHHHHHHhccCCCCCCcEEEEeCCCcHH---HHHHHHHcCCceEEeCCCCHHHHHHHHHHHhh
Q 026776 99 GYELLKKIKDSSALREIPVVIMSSENILA---RIDRCLEDGAEDFIVKPVKLSDVKRIKDYLTR 159 (233)
Q Consensus 99 g~~ll~~Lr~~~~~~~~piIvlt~~~~~~---~~~~al~~Ga~dyL~KP~~~~eL~~~~~~l~~ 159 (233)
++++++.+|+. . ++|++++... +.. ....+.++|+++++.-....+++.+++..+.+
T Consensus 82 ~~~~i~~ir~~-~--~~Pv~~m~~~-~~~~~~~~~~a~~aGadgv~v~d~~~~~~~~~~~~~~~ 141 (262)
T 1rd5_A 82 VLEMLREVTPE-L--SCPVVLLSYY-KPIMFRSLAKMKEAGVHGLIVPDLPYVAAHSLWSEAKN 141 (262)
T ss_dssp HHHHHHHHGGG-C--SSCEEEECCS-HHHHSCCTHHHHHTTCCEEECTTCBTTTHHHHHHHHHH
T ss_pred HHHHHHHHHhc-C--CCCEEEEecC-cHHHHHHHHHHHHcCCCEEEEcCCChhhHHHHHHHHHH
Confidence 56778888875 2 7888877522 211 12348899999999866666666666655543
No 185
>3tha_A Tryptophan synthase alpha chain; structural genomics, center for structural genomics of infec diseases, csgid, lyase; 2.37A {Campylobacter jejuni}
Probab=63.57 E-value=17 Score=29.55 Aligned_cols=46 Identities=13% Similarity=0.150 Sum_probs=34.7
Q ss_pred CCcEEEEeCC------CcHHHHHHHHHcCCceEEeCCCCHHHHHHHHHHHhh
Q 026776 114 EIPVVIMSSE------NILARIDRCLEDGAEDFIVKPVKLSDVKRIKDYLTR 159 (233)
Q Consensus 114 ~~piIvlt~~------~~~~~~~~al~~Ga~dyL~KP~~~~eL~~~~~~l~~ 159 (233)
.+|+++++-. +.+....+|.++|++++|.-.+..+|.......+.+
T Consensus 88 ~~Pivlm~Y~N~i~~~G~e~F~~~~~~aGvdG~IipDLP~eE~~~~~~~~~~ 139 (252)
T 3tha_A 88 KKALVFMVYYNLIFSYGLEKFVKKAKSLGICALIVPELSFEESDDLIKECER 139 (252)
T ss_dssp SSEEEEECCHHHHHHHCHHHHHHHHHHTTEEEEECTTCCGGGCHHHHHHHHH
T ss_pred CCCEEEEeccCHHHHhhHHHHHHHHHHcCCCEEEeCCCCHHHHHHHHHHHHH
Confidence 4799988653 345677889999999999988888886666555543
No 186
>3ajx_A 3-hexulose-6-phosphate synthase; HPS, OMPDC suprafamily, LYA; 1.60A {Mycobacterium gastri}
Probab=63.30 E-value=4.9 Score=31.03 Aligned_cols=59 Identities=14% Similarity=0.102 Sum_probs=36.5
Q ss_pred CHHHHHHHHhccCCCCCCcEEE--EeCCCcHHHHHHHHHcCCceEEeCCCCH-HHHHHHHHHHh
Q 026776 98 TGYELLKKIKDSSALREIPVVI--MSSENILARIDRCLEDGAEDFIVKPVKL-SDVKRIKDYLT 158 (233)
Q Consensus 98 ~g~~ll~~Lr~~~~~~~~piIv--lt~~~~~~~~~~al~~Ga~dyL~KP~~~-~eL~~~~~~l~ 158 (233)
+|.++++.||+..+ ..|+++ ...+--......+.++|++.+..-+... +.+.++++.+.
T Consensus 39 ~g~~~i~~l~~~~~--~~~i~~~l~~~di~~~~~~~a~~~Gad~v~vh~~~~~~~~~~~~~~~~ 100 (207)
T 3ajx_A 39 EGLSVITAVKKAHP--DKIVFADMKTMDAGELEADIAFKAGADLVTVLGSADDSTIAGAVKAAQ 100 (207)
T ss_dssp HCTHHHHHHHHHST--TSEEEEEEEECSCHHHHHHHHHHTTCSEEEEETTSCHHHHHHHHHHHH
T ss_pred hCHHHHHHHHHhCC--CCeEEEEEEecCccHHHHHHHHhCCCCEEEEeccCChHHHHHHHHHHH
Confidence 45678888887643 567764 3332123457788899999887655544 44555555554
No 187
>3s83_A Ggdef family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, signaling protein; HET: MSE; 1.34A {Caulobacter crescentus} PDB: 3u2e_A
Probab=62.97 E-value=14 Score=29.40 Aligned_cols=98 Identities=9% Similarity=0.092 Sum_probs=57.6
Q ss_pred HHHHhhcCCEEEE--ECCHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCC----C-CCCHHHHHHHHhccCCCCCCcEE
Q 026776 46 ERLLTISSCKVTA--VDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCM----P-GMTGYELLKKIKDSSALREIPVV 118 (233)
Q Consensus 46 ~~~L~~~g~~v~~--a~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~m----p-~~~g~~ll~~Lr~~~~~~~~piI 118 (233)
-..|+..|+.+.. +.++...+..+ ...++|.|=+|-.+ . +.....+++.+........+.+
T Consensus 145 l~~l~~~G~~ialDdfG~g~ssl~~L-----------~~l~~d~iKiD~~~v~~~~~~~~~~~~~~~i~~~a~~~g~~v- 212 (259)
T 3s83_A 145 LKTLRDAGAGLALDDFGTGFSSLSYL-----------TRLPFDTLKIDRYFVRTMGNNAGSAKIVRSVVKLGQDLDLEV- 212 (259)
T ss_dssp HHHHHHHTCEEEEECC---CHHHHHH-----------HHSCCCEEEECHHHHHHTTTCHHHHHHHHHHHHHHHHTTCEE-
T ss_pred HHHHHHCCCEEEEECCCCCchhHHHH-----------HhCCCCEEEECHHHHhhhhcCchHHHHHHHHHHHHHHCCCeE-
Confidence 3456778987765 45666666666 34578999998532 1 1223344444433221113333
Q ss_pred EEeCCCcHHHHHHHHHcCCceE----EeCCCCHHHHHHHHH
Q 026776 119 IMSSENILARIDRCLEDGAEDF----IVKPVKLSDVKRIKD 155 (233)
Q Consensus 119 vlt~~~~~~~~~~al~~Ga~dy----L~KP~~~~eL~~~~~ 155 (233)
+..+-.+.+....+.+.|++.+ +.||...+++...+.
T Consensus 213 iaeGVEt~~~~~~l~~lG~~~~QG~~~~~p~~~~~~~~~l~ 253 (259)
T 3s83_A 213 VAEGVENAEMAHALQSLGCDYGQGFGYAPALSPQEAEVYLN 253 (259)
T ss_dssp EECCCCSHHHHHHHHHHTCCEECBTTTBCCBCHHHHHHHHH
T ss_pred EEEeCCCHHHHHHHHhcCCCEeecCcccCCCCHHHHHHHHH
Confidence 3445566777777888887643 779999998866543
No 188
>3gjy_A Spermidine synthase; APC62791, structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.47A {Corynebacterium glutamicum atcc 13032}
Probab=62.52 E-value=32 Score=28.76 Aligned_cols=69 Identities=17% Similarity=0.184 Sum_probs=41.6
Q ss_pred CcEEEEEeCCHHHHHHHHHHHhhc-CCEE-EEECCHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCCCCC-----HHH
Q 026776 29 EVHVLAVDDSFVDRKVIERLLTIS-SCKV-TAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMT-----GYE 101 (233)
Q Consensus 29 ~~~ILIVddd~~~~~~l~~~L~~~-g~~v-~~a~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp~~~-----g~~ 101 (233)
..+|..||=++.+.+..++.+... +-.+ ....++.+.+... ....||+||+|...+... ..+
T Consensus 113 ~~~v~~VEidp~vi~~Ar~~~~~~~~~rv~v~~~Da~~~l~~~-----------~~~~fDvIi~D~~~~~~~~~~L~t~e 181 (317)
T 3gjy_A 113 QSRNTVVELDAELARLSREWFDIPRAPRVKIRVDDARMVAESF-----------TPASRDVIIRDVFAGAITPQNFTTVE 181 (317)
T ss_dssp TCEEEEEESCHHHHHHHHHHSCCCCTTTEEEEESCHHHHHHTC-----------CTTCEEEEEECCSTTSCCCGGGSBHH
T ss_pred CcEEEEEECCHHHHHHHHHhccccCCCceEEEECcHHHHHhhc-----------cCCCCCEEEECCCCccccchhhhHHH
Confidence 347888888888887777776532 1122 2355666555432 235799999997655321 245
Q ss_pred HHHHHhc
Q 026776 102 LLKKIKD 108 (233)
Q Consensus 102 ll~~Lr~ 108 (233)
+++.++.
T Consensus 182 fl~~~~r 188 (317)
T 3gjy_A 182 FFEHCHR 188 (317)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6666544
No 189
>1izc_A Macrophomate synthase intermolecular diels-aldera; TIM-barrel, pyruvate Mg(II) complex, lyase; 1.70A {Macrophoma commelinae} SCOP: c.1.12.5
Probab=62.11 E-value=56 Score=27.58 Aligned_cols=76 Identities=14% Similarity=0.192 Sum_probs=48.9
Q ss_pred CcccEEEEcCCCCCCCHHHHHHHHhccC--CCCCCcEEEEeCCCcHHHHHHHHHcCCceEEe-CCCCHHHHHHHHHHHh
Q 026776 83 LKVDLIITDYCMPGMTGYELLKKIKDSS--ALREIPVVIMSSENILARIDRCLEDGAEDFIV-KPVKLSDVKRIKDYLT 158 (233)
Q Consensus 83 ~~~DlvllD~~mp~~~g~~ll~~Lr~~~--~~~~~piIvlt~~~~~~~~~~al~~Ga~dyL~-KP~~~~eL~~~~~~l~ 158 (233)
..+|.|++|+.-...+--.+.+.|+... .....++++=+...+...+..+++.|+++++. |=-+.+++.++...+.
T Consensus 62 ~GaD~vilDlEha~~~~e~~~~~l~a~~~~~~~~~~~~VRv~~~~~~di~~~LdaGa~gImlP~V~saee~~~~~~~~~ 140 (339)
T 1izc_A 62 TKPDFVWIDVEHGMFNRLELHDAIHAAQHHSEGRSLVIVRVPKHDEVSLSTALDAGAAGIVIPHVETVEEVREFVKEMY 140 (339)
T ss_dssp TCCSEEEEETTTSCCCHHHHHHHHHHHHHHTTTCSEEEEECCTTCHHHHHHHHHHTCSEEEETTCCCHHHHHHHHHHHS
T ss_pred CCCCEEEEECCCCCCcHHHHHHHHHHhhhcCCCCCeEEEEeCCCCHHHHHHHHhCCCCEEEeCCCCCHHHHHHHHHHhc
Confidence 4689999999766555545555554322 10125555555556678888999999998644 3355777877766653
No 190
>3bo9_A Putative nitroalkan dioxygenase; TM0800, structural genomics center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE 2PE; 2.71A {Thermotoga maritima MSB8}
Probab=62.02 E-value=41 Score=28.00 Aligned_cols=79 Identities=23% Similarity=0.204 Sum_probs=52.1
Q ss_pred HhhcCCEEEE-ECCHHHHHHHhhhhhhhhccCCCCCcccEEEEcCC-CC----CCCHHHHHHHHhccCCCCCCcEEEEeC
Q 026776 49 LTISSCKVTA-VDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYC-MP----GMTGYELLKKIKDSSALREIPVVIMSS 122 (233)
Q Consensus 49 L~~~g~~v~~-a~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~-mp----~~~g~~ll~~Lr~~~~~~~~piIvlt~ 122 (233)
++..|..+.. +.+.+++.... ....|.|+++-. .. ....++++..+++.. ++|+|+-.+
T Consensus 120 l~~~g~~v~~~v~s~~~a~~a~------------~~GaD~i~v~g~~~GG~~G~~~~~~ll~~i~~~~---~iPviaaGG 184 (326)
T 3bo9_A 120 LKENGTKVIPVVASDSLARMVE------------RAGADAVIAEGMESGGHIGEVTTFVLVNKVSRSV---NIPVIAAGG 184 (326)
T ss_dssp HHHTTCEEEEEESSHHHHHHHH------------HTTCSCEEEECTTSSEECCSSCHHHHHHHHHHHC---SSCEEEESS
T ss_pred HHHcCCcEEEEcCCHHHHHHHH------------HcCCCEEEEECCCCCccCCCccHHHHHHHHHHHc---CCCEEEECC
Confidence 3444544433 55666665543 124788888532 11 135678888887642 688888777
Q ss_pred CCcHHHHHHHHHcCCceEEe
Q 026776 123 ENILARIDRCLEDGAEDFIV 142 (233)
Q Consensus 123 ~~~~~~~~~al~~Ga~dyL~ 142 (233)
-.+.+.+.+++..|++.+..
T Consensus 185 I~~~~dv~~al~~GA~gV~v 204 (326)
T 3bo9_A 185 IADGRGMAAAFALGAEAVQM 204 (326)
T ss_dssp CCSHHHHHHHHHHTCSEEEE
T ss_pred CCCHHHHHHHHHhCCCEEEe
Confidence 77788899999999999864
No 191
>3dty_A Oxidoreductase, GFO/IDH/MOCA family; MGCL2, tetramer, PSI-2, 11131, NYSGXRC, structural genomics, protein structure initiative; 2.04A {Pseudomonas syringae PV}
Probab=61.89 E-value=49 Score=28.10 Aligned_cols=115 Identities=12% Similarity=0.116 Sum_probs=60.6
Q ss_pred CCCcEEEEEeCCH---HHHHHHHHHHhhcCCEEEE-E-C-CHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCCCCCHH
Q 026776 27 TEEVHVLAVDDSF---VDRKVIERLLTISSCKVTA-V-D-SGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGY 100 (233)
Q Consensus 27 ~~~~~ILIVddd~---~~~~~l~~~L~~~g~~v~~-a-~-~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp~~~g~ 100 (233)
++++||.||.--. .-...+..+....+++++. + + +.+.+-+.... ......-+. .+--
T Consensus 10 m~~~rvgiiG~G~~~~ig~~h~~~~~~~~~~~lva~v~d~~~~~a~~~a~~---------~g~~~~~~~-------~~~~ 73 (398)
T 3dty_A 10 PQPIRWAMVGGGSQSQIGYIHRCAALRDNTFVLVAGAFDIDPIRGSAFGEQ---------LGVDSERCY-------ADYL 73 (398)
T ss_dssp CSCEEEEEEECCTTCSSHHHHHHHHHGGGSEEEEEEECCSSHHHHHHHHHH---------TTCCGGGBC-------SSHH
T ss_pred cCcceEEEEcCCccchhHHHHHHHHhhCCCeEEEEEEeCCCHHHHHHHHHH---------hCCCcceee-------CCHH
Confidence 5679999998765 3333344333334577764 3 3 33333332210 000000011 1333
Q ss_pred HHHHHHhccCCCCCCcEEEEeCC--CcHHHHHHHHHcCCceEEeCCCC--HHHHHHHHHHHhh
Q 026776 101 ELLKKIKDSSALREIPVVIMSSE--NILARIDRCLEDGAEDFIVKPVK--LSDVKRIKDYLTR 159 (233)
Q Consensus 101 ~ll~~Lr~~~~~~~~piIvlt~~--~~~~~~~~al~~Ga~dyL~KP~~--~~eL~~~~~~l~~ 159 (233)
++++.-+...+ .+-+|+++.. ...+.+..|+++|..=|+.||+. .++..++++...+
T Consensus 74 ~ll~~~~~~~~--~vD~V~i~tp~~~H~~~~~~al~aGkhVl~EKPla~~~~ea~~l~~~a~~ 134 (398)
T 3dty_A 74 SMFEQEARRAD--GIQAVSIATPNGTHYSITKAALEAGLHVVCEKPLCFTVEQAENLRELSHK 134 (398)
T ss_dssp HHHHHHTTCTT--CCSEEEEESCGGGHHHHHHHHHHTTCEEEECSCSCSCHHHHHHHHHHHHH
T ss_pred HHHhcccccCC--CCCEEEECCCcHHHHHHHHHHHHCCCeEEEeCCCcCCHHHHHHHHHHHHH
Confidence 44443221112 3445555443 24577889999999999999964 5667777666554
No 192
>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans}
Probab=61.81 E-value=7 Score=30.43 Aligned_cols=41 Identities=12% Similarity=-0.069 Sum_probs=27.8
Q ss_pred cCCCCCCCCCcEEEEEeCCHHHHHHHHHHHhhcCCEEEEEC
Q 026776 20 FDLSPSDTEEVHVLAVDDSFVDRKVIERLLTISSCKVTAVD 60 (233)
Q Consensus 20 ~~~~~~~~~~~~ILIVddd~~~~~~l~~~L~~~g~~v~~a~ 60 (233)
........+.++|||..-.-.....+.+.|.+.|++|....
T Consensus 12 ~~~~~~~l~~~~ilVtGatG~iG~~l~~~L~~~G~~V~~~~ 52 (236)
T 3e8x_A 12 SGRENLYFQGMRVLVVGANGKVARYLLSELKNKGHEPVAMV 52 (236)
T ss_dssp ---------CCEEEEETTTSHHHHHHHHHHHHTTCEEEEEE
T ss_pred ccccccCcCCCeEEEECCCChHHHHHHHHHHhCCCeEEEEE
Confidence 33444556778999999998888888888888899888765
No 193
>3q2i_A Dehydrogenase; rossmann fold, UDP-sugar binding, NAD binding oxidoreductase; HET: NAD HP7; 1.50A {Chromobacterium violaceum} PDB: 3q2k_A*
Probab=61.69 E-value=35 Score=28.44 Aligned_cols=109 Identities=13% Similarity=0.125 Sum_probs=59.9
Q ss_pred CCCCcEEEEEeCCHHHHHHHHHHHhh-cCCEEEE-ECCHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCCCCCHHHHH
Q 026776 26 DTEEVHVLAVDDSFVDRKVIERLLTI-SSCKVTA-VDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELL 103 (233)
Q Consensus 26 ~~~~~~ILIVddd~~~~~~l~~~L~~-~g~~v~~-a~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp~~~g~~ll 103 (233)
..++++|.||.--..-...+..+.+. .++++.. ++...+..+.+.. .+.+-..+ +--+++
T Consensus 10 ~~~~~rvgiiG~G~~g~~~~~~l~~~~~~~~lvav~d~~~~~~~~~~~------------~~~~~~~~------~~~~ll 71 (354)
T 3q2i_A 10 TDRKIRFALVGCGRIANNHFGALEKHADRAELIDVCDIDPAALKAAVE------------RTGARGHA------SLTDML 71 (354)
T ss_dssp CSSCEEEEEECCSTTHHHHHHHHHHTTTTEEEEEEECSSHHHHHHHHH------------HHCCEEES------CHHHHH
T ss_pred CCCcceEEEEcCcHHHHHHHHHHHhCCCCeEEEEEEcCCHHHHHHHHH------------HcCCceeC------CHHHHh
Confidence 34679999998766555555555444 4777664 3333333332211 12221111 222333
Q ss_pred HHHhccCCCCCCcEEEEeCCC--cHHHHHHHHHcCCceEEeCCCC--HHHHHHHHHHHhh
Q 026776 104 KKIKDSSALREIPVVIMSSEN--ILARIDRCLEDGAEDFIVKPVK--LSDVKRIKDYLTR 159 (233)
Q Consensus 104 ~~Lr~~~~~~~~piIvlt~~~--~~~~~~~al~~Ga~dyL~KP~~--~~eL~~~~~~l~~ 159 (233)
+ .. .+-+|+++... ..+.+..++++|..=|+.||+. .++..++.+...+
T Consensus 72 ~---~~----~~D~V~i~tp~~~h~~~~~~al~~gk~v~~EKP~a~~~~~~~~l~~~a~~ 124 (354)
T 3q2i_A 72 A---QT----DADIVILTTPSGLHPTQSIECSEAGFHVMTEKPMATRWEDGLEMVKAADK 124 (354)
T ss_dssp H---HC----CCSEEEECSCGGGHHHHHHHHHHTTCEEEECSSSCSSHHHHHHHHHHHHH
T ss_pred c---CC----CCCEEEECCCcHHHHHHHHHHHHCCCCEEEeCCCcCCHHHHHHHHHHHHH
Confidence 2 21 34455554433 3566788999999999999964 5566666555543
No 194
>1geq_A Tryptophan synthase alpha-subunit; hyperthermophIle, pyrococ furiosus, X-RAY analysis, stability, calorimetry, lyase; 2.00A {Pyrococcus furiosus} SCOP: c.1.2.4 PDB: 1wdw_A* 2dzu_A 2dzp_A 2e09_A 2dzw_A 2dzs_A 2dzv_A 2dzt_A 2dzx_A
Probab=61.48 E-value=56 Score=25.59 Aligned_cols=42 Identities=21% Similarity=0.317 Sum_probs=31.8
Q ss_pred HHHHHHHHhccCCCCCCcEEEEeCCCcHHHHHHHHHcCCceEEeC
Q 026776 99 GYELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVK 143 (233)
Q Consensus 99 g~~ll~~Lr~~~~~~~~piIvlt~~~~~~~~~~al~~Ga~dyL~K 143 (233)
+++.++++++.. .+|+++-.+-...+.+.+++++|++.++.=
T Consensus 179 ~~~~i~~l~~~~---~~pi~~~GGI~~~e~i~~~~~~Gad~vivG 220 (248)
T 1geq_A 179 AYDLLRRAKRIC---RNKVAVGFGVSKREHVVSLLKEGANGVVVG 220 (248)
T ss_dssp HHHHHHHHHHHC---SSCEEEESCCCSHHHHHHHHHTTCSEEEEC
T ss_pred HHHHHHHHHhhc---CCCEEEEeecCCHHHHHHHHHcCCCEEEEc
Confidence 356788887643 678887766666688888889999999865
No 195
>3s5p_A Ribose 5-phosphate isomerase; structural genomics, seattle structural genomics center for infectious disease, ssgcid; 2.30A {Giardia lamblia}
Probab=61.42 E-value=14 Score=28.06 Aligned_cols=49 Identities=8% Similarity=0.062 Sum_probs=28.2
Q ss_pred eeeccccccCCCCCCCCCcEEEEEeCCH--HHHHHHHHHHhhcCCEEEEEC
Q 026776 12 LISDEIDGFDLSPSDTEEVHVLAVDDSF--VDRKVIERLLTISSCKVTAVD 60 (233)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~ILIVddd~--~~~~~l~~~L~~~g~~v~~a~ 60 (233)
++++-+...+-......+|+|.|--|+. ...+.+.++|++.||+|.-+.
T Consensus 4 ~~~~~~~~~~~~~~~~~~MkIaIgsDhaG~~lK~~i~~~L~~~G~eV~D~G 54 (166)
T 3s5p_A 4 HHHHHMGTLEAQTQGPGSMKVAFASDHGGRDLRMFLQQRASAHGYEVMDLG 54 (166)
T ss_dssp ---------------CTTCEEEEEECGGGHHHHHHHHHHHHHTTCEEEEEE
T ss_pred cccccccceeecCCCCCceEEEEEECchHHHHHHHHHHHHHHCCCEEEEcC
Confidence 3444455544444455678999999985 667789999999999997664
No 196
>3gnn_A Nicotinate-nucleotide pyrophosphorylase; decode biostructures, ssgcid, niaid, SBRI, UWPPG, glycosyltransferase, transferase, structural genomics; 2.25A {Burkholderia pseudomallei}
Probab=61.35 E-value=46 Score=27.62 Aligned_cols=65 Identities=12% Similarity=0.097 Sum_probs=42.8
Q ss_pred EEECCHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCCCCCHHHHHHHHhccCCCCCCcEEEEeCCCcHHHHHHHHHcC
Q 026776 57 TAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKKIKDSSALREIPVVIMSSENILARIDRCLEDG 136 (233)
Q Consensus 57 ~~a~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp~~~g~~ll~~Lr~~~~~~~~piIvlt~~~~~~~~~~al~~G 136 (233)
+.+++.+++.+.+. ...|+|.+|- ++--++-+.++... .-..|..++.-+.+.+.+..+.|
T Consensus 214 VEvdtlde~~eAl~------------aGaD~I~LDn----~~~~~l~~av~~i~---~~v~ieaSGGI~~~~i~~~a~tG 274 (298)
T 3gnn_A 214 IEVETLDQLRTALA------------HGARSVLLDN----FTLDMMRDAVRVTE---GRAVLEVSGGVNFDTVRAIAETG 274 (298)
T ss_dssp EEESSHHHHHHHHH------------TTCEEEEEES----CCHHHHHHHHHHHT---TSEEEEEESSCSTTTHHHHHHTT
T ss_pred EEeCCHHHHHHHHH------------cCCCEEEECC----CCHHHHHHHHHHhC---CCCeEEEEcCCCHHHHHHHHHcC
Confidence 45889988888773 2489999995 33333333333322 23456677777778888888999
Q ss_pred CceE
Q 026776 137 AEDF 140 (233)
Q Consensus 137 a~dy 140 (233)
+|.+
T Consensus 275 VD~i 278 (298)
T 3gnn_A 275 VDRI 278 (298)
T ss_dssp CSEE
T ss_pred CCEE
Confidence 9655
No 197
>3v5n_A Oxidoreductase; structural genomics, PSI-biology, protein structure initiati nysgrc, NEW YORK structural genomics research consortium; 2.80A {Sinorhizobium meliloti}
Probab=61.29 E-value=39 Score=29.08 Aligned_cols=116 Identities=15% Similarity=0.074 Sum_probs=59.8
Q ss_pred CCCCcEEEEEeCCH---HHHHHHHHHHhhcCCEEEE-E-C-CHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCCCCCH
Q 026776 26 DTEEVHVLAVDDSF---VDRKVIERLLTISSCKVTA-V-D-SGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTG 99 (233)
Q Consensus 26 ~~~~~~ILIVddd~---~~~~~l~~~L~~~g~~v~~-a-~-~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp~~~g 99 (233)
.++++||.||.--. .-...+..+....+++++. + + +.+.+-+....- ....+-+. .+-
T Consensus 34 ~m~~~rvgiiG~G~~~~ig~~h~~~~~~~~~~~lva~v~d~~~~~a~~~a~~~---------g~~~~~~~-------~~~ 97 (417)
T 3v5n_A 34 RQKRIRLGMVGGGSGAFIGAVHRIAARLDDHYELVAGALSSTPEKAEASGREL---------GLDPSRVY-------SDF 97 (417)
T ss_dssp -CCCEEEEEESCC--CHHHHHHHHHHHHTSCEEEEEEECCSSHHHHHHHHHHH---------TCCGGGBC-------SCH
T ss_pred cCCcceEEEEcCCCchHHHHHHHHHHhhCCCcEEEEEEeCCCHHHHHHHHHHc---------CCCccccc-------CCH
Confidence 46789999998775 3333333333333467663 3 3 333333222100 00000011 133
Q ss_pred HHHHHHHhccCCCCCCcEEEEeCC--CcHHHHHHHHHcCCceEEeCCC--CHHHHHHHHHHHhh
Q 026776 100 YELLKKIKDSSALREIPVVIMSSE--NILARIDRCLEDGAEDFIVKPV--KLSDVKRIKDYLTR 159 (233)
Q Consensus 100 ~~ll~~Lr~~~~~~~~piIvlt~~--~~~~~~~~al~~Ga~dyL~KP~--~~~eL~~~~~~l~~ 159 (233)
-+++..-..+.+ .+-+|+++.. ...+.+..|+++|..=|+.||+ +.++..++++...+
T Consensus 98 ~~ll~~~~~~~~--~vD~V~I~tp~~~H~~~~~~al~aGkhVl~EKPla~~~~ea~~l~~~a~~ 159 (417)
T 3v5n_A 98 KEMAIREAKLKN--GIEAVAIVTPNHVHYAAAKEFLKRGIHVICDKPLTSTLADAKKLKKAADE 159 (417)
T ss_dssp HHHHHHHHHCTT--CCSEEEECSCTTSHHHHHHHHHTTTCEEEEESSSCSSHHHHHHHHHHHHH
T ss_pred HHHHhcccccCC--CCcEEEECCCcHHHHHHHHHHHhCCCeEEEECCCcCCHHHHHHHHHHHHH
Confidence 344443221112 3445555443 3467788999999999999995 56667776666554
No 198
>2z6i_A Trans-2-enoyl-ACP reductase II; fatty acid synthesis, antibiotics, oxidoreductase, flavoprotein; HET: FMN; 1.70A {Streptococcus pneumoniae} PDB: 2z6j_A*
Probab=61.13 E-value=41 Score=28.00 Aligned_cols=56 Identities=20% Similarity=0.185 Sum_probs=41.1
Q ss_pred cccEEEEcCCC-C----CCCHHHHHHHHhccCCCCCCcEEEEeCCCcHHHHHHHHHcCCceEEe
Q 026776 84 KVDLIITDYCM-P----GMTGYELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIV 142 (233)
Q Consensus 84 ~~DlvllD~~m-p----~~~g~~ll~~Lr~~~~~~~~piIvlt~~~~~~~~~~al~~Ga~dyL~ 142 (233)
..|.|+++-.- . ....+++++.+++.. .+|+|+..+-.+.+.+.+++..|++.+..
T Consensus 130 GaD~i~v~g~~~GG~~g~~~~~~ll~~i~~~~---~iPViaaGGI~~~~~~~~al~~GAdgV~v 190 (332)
T 2z6i_A 130 GADAVIAEGMEAGGHIGKLTTMTLVRQVATAI---SIPVIAAGGIADGEGAAAGFMLGAEAVQV 190 (332)
T ss_dssp TCSCEEEECTTSSEECCSSCHHHHHHHHHHHC---SSCEEEESSCCSHHHHHHHHHTTCSEEEE
T ss_pred CCCEEEEECCCCCCCCCCccHHHHHHHHHHhc---CCCEEEECCCCCHHHHHHHHHcCCCEEEe
Confidence 47888885321 1 235678888888643 68998887777788899999999998754
No 199
>3khj_A Inosine-5-monophosphate dehydrogenase; enzyme-inhibitor complex, oxidoreductase; HET: IMP C64; 2.80A {Cryptosporidium parvum}
Probab=61.10 E-value=50 Score=28.10 Aligned_cols=91 Identities=13% Similarity=0.140 Sum_probs=54.6
Q ss_pred HHHHHHHHHHhhcCCEEE--EECCHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCC-----------CCCHHHHHHHH
Q 026776 40 VDRKVIERLLTISSCKVT--AVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMP-----------GMTGYELLKKI 106 (233)
Q Consensus 40 ~~~~~l~~~L~~~g~~v~--~a~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp-----------~~~g~~ll~~L 106 (233)
...+.++.+-+..+..+. .+.+.+++..+.. ...|.|.+-..-. +...++++.++
T Consensus 132 ~~~~~i~~i~~~~~~~Vivg~v~t~e~A~~l~~------------aGaD~I~VG~~~Gs~~~tr~~~g~g~p~~~~i~~v 199 (361)
T 3khj_A 132 NIIRTLKEIKSKMNIDVIVGNVVTEEATKELIE------------NGADGIKVGIGPGSICTTRIVAGVGVPQITAIEKC 199 (361)
T ss_dssp HHHHHHHHHHHHCCCEEEEEEECSHHHHHHHHH------------TTCSEEEECSSCCTTCCHHHHTCBCCCHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCcEEEccCCCHHHHHHHHH------------cCcCEEEEecCCCcCCCcccccCCCCCcHHHHHHH
Confidence 344555554444465544 4677777766652 3468887732110 12345555555
Q ss_pred hccCCCCCCcEEEEeCCCcHHHHHHHHHcCCceEEe
Q 026776 107 KDSSALREIPVVIMSSENILARIDRCLEDGAEDFIV 142 (233)
Q Consensus 107 r~~~~~~~~piIvlt~~~~~~~~~~al~~Ga~dyL~ 142 (233)
.+......+|||.-.+-.+...+.+++.+||+.+..
T Consensus 200 ~~~~~~~~iPVIA~GGI~~~~di~kala~GAd~V~v 235 (361)
T 3khj_A 200 SSVASKFGIPIIADGGIRYSGDIGKALAVGASSVMI 235 (361)
T ss_dssp HHHHHHHTCCEEEESCCCSHHHHHHHHHHTCSEEEE
T ss_pred HHHHhhcCCeEEEECCCCCHHHHHHHHHcCCCEEEE
Confidence 432111268888877766788899999999998864
No 200
>3euw_A MYO-inositol dehydrogenase; protein structure initiative II (PSI II), NYSGXRC, MYO-inosi dehydrogenase, oxidoreductase, tetramer; 2.30A {Corynebacterium glutamicum}
Probab=61.04 E-value=68 Score=26.43 Aligned_cols=107 Identities=12% Similarity=0.156 Sum_probs=57.6
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHhhcCCEEEE-ECCHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCCCCCHHHHHHHH
Q 026776 28 EEVHVLAVDDSFVDRKVIERLLTISSCKVTA-VDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKKI 106 (233)
Q Consensus 28 ~~~~ILIVddd~~~~~~l~~~L~~~g~~v~~-a~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp~~~g~~ll~~L 106 (233)
++++|.||.--..-...+..+.+..++++.. ++...+..+.+. .. +.+-..+ + .+.+
T Consensus 3 ~~~rvgiiG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~~a----------~~--~g~~~~~------~----~~~~ 60 (344)
T 3euw_A 3 LTLRIALFGAGRIGHVHAANIAANPDLELVVIADPFIEGAQRLA----------EA--NGAEAVA------S----PDEV 60 (344)
T ss_dssp CCEEEEEECCSHHHHHHHHHHHHCTTEEEEEEECSSHHHHHHHH----------HT--TTCEEES------S----HHHH
T ss_pred CceEEEEECCcHHHHHHHHHHHhCCCcEEEEEECCCHHHHHHHH----------HH--cCCceeC------C----HHHH
Confidence 3589999998665555554444444677664 333333333321 11 1111111 1 1222
Q ss_pred hccCCCCCCcEEEEeCC--CcHHHHHHHHHcCCceEEeCCCC--HHHHHHHHHHHhh
Q 026776 107 KDSSALREIPVVIMSSE--NILARIDRCLEDGAEDFIVKPVK--LSDVKRIKDYLTR 159 (233)
Q Consensus 107 r~~~~~~~~piIvlt~~--~~~~~~~~al~~Ga~dyL~KP~~--~~eL~~~~~~l~~ 159 (233)
-.. . .+-+|+++.. ...+.+..++++|..=|+.||+. .++..++.+...+
T Consensus 61 l~~-~--~~D~V~i~tp~~~h~~~~~~al~~gk~v~~EKP~~~~~~~~~~l~~~a~~ 114 (344)
T 3euw_A 61 FAR-D--DIDGIVIGSPTSTHVDLITRAVERGIPALCEKPIDLDIEMVRACKEKIGD 114 (344)
T ss_dssp TTC-S--CCCEEEECSCGGGHHHHHHHHHHTTCCEEECSCSCSCHHHHHHHHHHHGG
T ss_pred hcC-C--CCCEEEEeCCchhhHHHHHHHHHcCCcEEEECCCCCCHHHHHHHHHHHHh
Confidence 211 1 3444555443 34566788999999999999954 5666666665554
No 201
>3tsm_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, ssgcid, seattle structural GE center for infectious disease, lyase; 2.15A {Brucella melitensis} SCOP: c.1.2.0
Probab=60.74 E-value=67 Score=26.18 Aligned_cols=87 Identities=13% Similarity=0.077 Sum_probs=55.6
Q ss_pred HHHHHHHHhhcCCEE-EEECCHHHHHHHhhhhhhhhccCCCCCcccEEEEcCC-CC--CCCHHHHHHHHhccCCCCCCcE
Q 026776 42 RKVIERLLTISSCKV-TAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYC-MP--GMTGYELLKKIKDSSALREIPV 117 (233)
Q Consensus 42 ~~~l~~~L~~~g~~v-~~a~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~-mp--~~~g~~ll~~Lr~~~~~~~~pi 117 (233)
...+.......|..+ ..+.+.+|+...+ ...+|+|=+... +- ..| ++....|...-+ ..+++
T Consensus 158 l~~l~~~a~~lGl~~lvevh~~eEl~~A~------------~~ga~iIGinnr~l~t~~~d-l~~~~~L~~~ip-~~~~v 223 (272)
T 3tsm_A 158 AKELEDTAFALGMDALIEVHDEAEMERAL------------KLSSRLLGVNNRNLRSFEVN-LAVSERLAKMAP-SDRLL 223 (272)
T ss_dssp HHHHHHHHHHTTCEEEEEECSHHHHHHHT------------TSCCSEEEEECBCTTTCCBC-THHHHHHHHHSC-TTSEE
T ss_pred HHHHHHHHHHcCCeEEEEeCCHHHHHHHH------------hcCCCEEEECCCCCccCCCC-hHHHHHHHHhCC-CCCcE
Confidence 334444456678754 4578888876655 345777765421 11 112 444555544322 26788
Q ss_pred EEEeCCCcHHHHHHHHHcCCceEEe
Q 026776 118 VIMSSENILARIDRCLEDGAEDFIV 142 (233)
Q Consensus 118 Ivlt~~~~~~~~~~al~~Ga~dyL~ 142 (233)
|.-++-...+++.++.+.|++++|.
T Consensus 224 IaesGI~t~edv~~l~~~Ga~gvLV 248 (272)
T 3tsm_A 224 VGESGIFTHEDCLRLEKSGIGTFLI 248 (272)
T ss_dssp EEESSCCSHHHHHHHHTTTCCEEEE
T ss_pred EEECCCCCHHHHHHHHHcCCCEEEE
Confidence 8888878899999999999999986
No 202
>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*
Probab=60.38 E-value=37 Score=23.51 Aligned_cols=106 Identities=10% Similarity=-0.021 Sum_probs=49.7
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhcCCEEEEECCHHHHHHHhhhhhhhh----------ccCCCCCcccEEEEcCCCCCCCH
Q 026776 30 VHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQS----------INGFDGLKVDLIITDYCMPGMTG 99 (233)
Q Consensus 30 ~~ILIVddd~~~~~~l~~~L~~~g~~v~~a~~~~~al~~l~~~~~~~----------~~~~~~~~~DlvllD~~mp~~~g 99 (233)
.+|+|+.- -.....+...|...|++|..++...+..+.+...+... ...+.-..+|+|+.-..-+....
T Consensus 7 ~~v~I~G~-G~iG~~~a~~l~~~g~~v~~~d~~~~~~~~~~~~~~~~~~~d~~~~~~l~~~~~~~~d~vi~~~~~~~~~~ 85 (144)
T 2hmt_A 7 KQFAVIGL-GRFGGSIVKELHRMGHEVLAVDINEEKVNAYASYATHAVIANATEENELLSLGIRNFEYVIVAIGANIQAS 85 (144)
T ss_dssp CSEEEECC-SHHHHHHHHHHHHTTCCCEEEESCHHHHHTTTTTCSEEEECCTTCHHHHHTTTGGGCSEEEECCCSCHHHH
T ss_pred CcEEEECC-CHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhCCEEEEeCCCCHHHHHhcCCCCCCEEEECCCCchHHH
Confidence 35788876 44555666666667777666554333333332110000 00001134788776543221122
Q ss_pred HHHHHHHhccCCCCCCcEEEEeCCCcHHHHHHHHHcCCceEE
Q 026776 100 YELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFI 141 (233)
Q Consensus 100 ~~ll~~Lr~~~~~~~~piIvlt~~~~~~~~~~al~~Ga~dyL 141 (233)
..++..++.... . .+|+.+... .......+.|++..+
T Consensus 86 ~~~~~~~~~~~~--~-~ii~~~~~~--~~~~~l~~~g~~~vi 122 (144)
T 2hmt_A 86 TLTTLLLKELDI--P-NIWVKAQNY--YHHKVLEKIGADRII 122 (144)
T ss_dssp HHHHHHHHHTTC--S-EEEEECCSH--HHHHHHHHHTCSEEE
T ss_pred HHHHHHHHHcCC--C-eEEEEeCCH--HHHHHHHHcCCCEEE
Confidence 344555555432 2 444444332 223334467877554
No 203
>1vmd_A MGS, methylglyoxal synthase; TM1185, structural genomics, JCSG, P structure initiative, PSI, joint center for structural GENO lyase; 2.06A {Thermotoga maritima} SCOP: c.24.1.2
Probab=60.19 E-value=15 Score=28.17 Aligned_cols=97 Identities=16% Similarity=0.078 Sum_probs=48.7
Q ss_pred cEEEEE--eCCHHHHHHHHHHHhhc--CCEEEEECCHHHHHHH-hh----------h-hhhhhccCCCCCcccEEEEcCC
Q 026776 30 VHVLAV--DDSFVDRKVIERLLTIS--SCKVTAVDSGRRALQF-LG----------L-DEEQSINGFDGLKVDLIITDYC 93 (233)
Q Consensus 30 ~~ILIV--ddd~~~~~~l~~~L~~~--g~~v~~a~~~~~al~~-l~----------~-~~~~~~~~~~~~~~DlvllD~~ 93 (233)
.+|+++ |.+......+.+.+... ||.+..-..-...++. .+ . ...+..+.+.+..+|+||-=..
T Consensus 28 g~V~lsv~D~dK~~lv~~ak~~~~lL~Gf~L~AT~gTa~~L~e~~Gl~v~~v~k~~eGG~pqI~d~I~~geIdlVInt~d 107 (178)
T 1vmd_A 28 KRIALIAHDRRKRDLLEWVSFNLGTLSKHELYATGTTGALLQEKLGLKVHRLKSGPLGGDQQIGAMIAEGKIDVLIFFWD 107 (178)
T ss_dssp CEEEEEECGGGHHHHHHHHHHSHHHHTTSEEEECHHHHHHHHHHHCCCCEECSCGGGTHHHHHHHHHHTTSCCEEEEECC
T ss_pred CEEEEEEehhhHHHHHHHHHHHHHHhcCCEEEEchHHHHHHHHHhCceeEEEeecCCCCCchHHHHHHCCCccEEEEccC
Confidence 445544 34444444455556666 8877654444444443 11 1 1112333445667787776333
Q ss_pred ----CC-CCCHHHHHHHHhccCCCCCCcEEEEeCCCcHHHHHHH
Q 026776 94 ----MP-GMTGYELLKKIKDSSALREIPVVIMSSENILARIDRC 132 (233)
Q Consensus 94 ----mp-~~~g~~ll~~Lr~~~~~~~~piIvlt~~~~~~~~~~a 132 (233)
.| ..||..+.+.--.. ++|+ +|.-........+
T Consensus 108 Pl~~~~h~~D~~~IRR~A~~~----~IP~--~TnlatA~A~v~a 145 (178)
T 1vmd_A 108 PLEPQAHDVDVKALIRIATVY----NIPV--AITRSTADFLISS 145 (178)
T ss_dssp SSSCCTTSCCHHHHHHHHHHT----TCCE--ESSHHHHHHHHHS
T ss_pred ccCCCcccccHHHHHHHHHHc----CCCE--EeCHHHHHHHHHH
Confidence 44 56777766655443 4555 4443333333333
No 204
>2w6r_A Imidazole glycerol phosphate synthase subunit HISF; lyase, fusion protein, cobalamin, precorrin, novel fold, VIT; 2.10A {Thermotoga maritima}
Probab=60.18 E-value=34 Score=27.20 Aligned_cols=41 Identities=10% Similarity=0.297 Sum_probs=34.1
Q ss_pred HHHHHHHhccCCCCCCcEEEEeCCCcHHHHHHHHHcCCceEEeC
Q 026776 100 YELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVK 143 (233)
Q Consensus 100 ~~ll~~Lr~~~~~~~~piIvlt~~~~~~~~~~al~~Ga~dyL~K 143 (233)
+++++++++.. .+|+|+..+-.+.+.+.++++.|+++++.=
T Consensus 189 ~~~i~~l~~~~---~ipvia~GGI~~~ed~~~~~~~Gadgv~vg 229 (266)
T 2w6r_A 189 TEMIRFVRPLT---TLPIIASGGAGKMEHFLEAFLAGADAALAA 229 (266)
T ss_dssp HHHHHHHGGGC---CSCEEEESCCCSHHHHHHHHHHTCSEEEES
T ss_pred HHHHHHHHHHc---CCCEEEeCCCCCHHHHHHHHHcCCHHHHcc
Confidence 78899998753 789998888888888888999999998654
No 205
>3oti_A CALG3; calicheamicin, TDP, structural genomics, PSI-2, protein STRU initiative, center for eukaryotic structural genomics, CESG fold; HET: TYD C0T; 1.60A {Micromonospora echinospora} PDB: 3d0q_A* 3d0r_A*
Probab=60.09 E-value=32 Score=28.82 Aligned_cols=40 Identities=10% Similarity=0.034 Sum_probs=23.1
Q ss_pred CCCCCCCCcEEEEEeCC----HHHHHHHHHHHhhcCCEEEEECC
Q 026776 22 LSPSDTEEVHVLAVDDS----FVDRKVIERLLTISSCKVTAVDS 61 (233)
Q Consensus 22 ~~~~~~~~~~ILIVddd----~~~~~~l~~~L~~~g~~v~~a~~ 61 (233)
.+..+.+.||||++-.. ..-...|...|...|++|..+..
T Consensus 13 ~~~~~~~~MrIl~~~~~~~Ghv~~~~~La~~L~~~GheV~v~~~ 56 (398)
T 3oti_A 13 SGHIEGRHMRVLFVSSPGIGHLFPLIQLAWGFRTAGHDVLIAVA 56 (398)
T ss_dssp ------CCCEEEEECCSSHHHHGGGHHHHHHHHHTTCEEEEEES
T ss_pred ccchhhhcCEEEEEcCCCcchHhHHHHHHHHHHHCCCEEEEecc
Confidence 33345566899999643 12223466677888998887654
No 206
>3ip3_A Oxidoreductase, putative; structural genomics, PSI-2, protein structure initiative, NEW YORK SGX research center for structural genomics; 2.14A {Thermotoga maritima}
Probab=59.96 E-value=42 Score=27.74 Aligned_cols=34 Identities=21% Similarity=0.404 Sum_probs=24.0
Q ss_pred HHHHHHHHHcCCceEEeCCCC--HHHHHHHHHHHhh
Q 026776 126 LARIDRCLEDGAEDFIVKPVK--LSDVKRIKDYLTR 159 (233)
Q Consensus 126 ~~~~~~al~~Ga~dyL~KP~~--~~eL~~~~~~l~~ 159 (233)
.+.+..|+++|..=|+.||+. .++..++++...+
T Consensus 81 ~~~~~~al~aGkhVl~EKPla~~~~ea~~l~~~a~~ 116 (337)
T 3ip3_A 81 GKILLEALERKIHAFVEKPIATTFEDLEKIRSVYQK 116 (337)
T ss_dssp HHHHHHHHHTTCEEEECSSSCSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCcEEEeCCCCCCHHHHHHHHHHHHH
Confidence 456778888998888999965 4466666655544
No 207
>3cvo_A Methyltransferase-like protein of unknown functio; rossman fold, structural genomics, joint center for structur genomics, JCSG; HET: MSE PG4; 1.80A {Silicibacter pomeroyi dss-3}
Probab=59.84 E-value=34 Score=26.62 Aligned_cols=25 Identities=16% Similarity=0.194 Sum_probs=22.4
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhcCC
Q 026776 30 VHVLAVDDSFVDRKVIERLLTISSC 54 (233)
Q Consensus 30 ~~ILIVddd~~~~~~l~~~L~~~g~ 54 (233)
-+|.-||.|+...+..++.|+..|+
T Consensus 52 g~VvtvE~d~~~~~~ar~~l~~~g~ 76 (202)
T 3cvo_A 52 KHVTSVESDRAWARMMKAWLAANPP 76 (202)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHSCC
T ss_pred CEEEEEeCCHHHHHHHHHHHHHcCC
Confidence 5799999999999999999998875
No 208
>3fro_A GLGA glycogen synthase; glycosyltransferase family, UDP/ADP-glucose-glycogen synthas rossman folds, transferase; HET: NHF; 2.50A {Pyrococcus abyssi} SCOP: c.87.1.8 PDB: 2bis_A* 3l01_A*
Probab=59.67 E-value=75 Score=26.39 Aligned_cols=107 Identities=10% Similarity=0.029 Sum_probs=63.5
Q ss_pred CcEEEEEeCCH-HHHHHHHHHHhhcCCEEEEEC--CHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCCCCCHHHHHHH
Q 026776 29 EVHVLAVDDSF-VDRKVIERLLTISSCKVTAVD--SGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKK 105 (233)
Q Consensus 29 ~~~ILIVddd~-~~~~~l~~~L~~~g~~v~~a~--~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp~~~g~~ll~~ 105 (233)
.++++|+.+.+ .....++++.+..+-.+.... +.++..+.+. ..|++++-... +.-|..+++.
T Consensus 285 ~~~l~i~G~g~~~~~~~l~~~~~~~~~~~~~~g~~~~~~~~~~~~-------------~adv~v~ps~~-e~~~~~~~EA 350 (439)
T 3fro_A 285 EMRFIIIGKGDPELEGWARSLEEKHGNVKVITEMLSREFVRELYG-------------SVDFVIIPSYF-EPFGLVALEA 350 (439)
T ss_dssp GEEEEEECCCCHHHHHHHHHHHHHCTTEEEECSCCCHHHHHHHHT-------------TCSEEEECBSC-CSSCHHHHHH
T ss_pred CeEEEEEcCCChhHHHHHHHHHhhcCCEEEEcCCCCHHHHHHHHH-------------HCCEEEeCCCC-CCccHHHHHH
Confidence 46666666543 233555556555553222233 4455555542 35777765443 4456677777
Q ss_pred HhccCCCCCCcEEEEeCCCcHHHHHHHHHcCCceEEeCCCCHHHHHHHHHHHhh
Q 026776 106 IKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVKLSDVKRIKDYLTR 159 (233)
Q Consensus 106 Lr~~~~~~~~piIvlt~~~~~~~~~~al~~Ga~dyL~KP~~~~eL~~~~~~l~~ 159 (233)
+.. .+|+|+- .... ..+.++.| .+++..|.+.+++.+.+..+..
T Consensus 351 ma~-----G~Pvi~s-~~~~---~~e~~~~~-~g~~~~~~d~~~la~~i~~ll~ 394 (439)
T 3fro_A 351 MCL-----GAIPIAS-AVGG---LRDIITNE-TGILVKAGDPGELANAILKALE 394 (439)
T ss_dssp HHT-----TCEEEEE-SSTH---HHHHCCTT-TCEEECTTCHHHHHHHHHHHHH
T ss_pred HHC-----CCCeEEc-CCCC---cceeEEcC-ceEEeCCCCHHHHHHHHHHHHh
Confidence 753 6787754 3332 33445566 8999999999999877766654
No 209
>3m2t_A Probable dehydrogenase; PSI, SGXNY, structural genomics, protein structure initiative; HET: NAD; 2.30A {Chromobacterium violaceum}
Probab=59.48 E-value=39 Score=28.35 Aligned_cols=109 Identities=16% Similarity=0.139 Sum_probs=59.6
Q ss_pred CCCcEEEEEeCCHHHHHHHHHHHhh-cCCEEEEE-CCHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCCCCCHHHHHH
Q 026776 27 TEEVHVLAVDDSFVDRKVIERLLTI-SSCKVTAV-DSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLK 104 (233)
Q Consensus 27 ~~~~~ILIVddd~~~~~~l~~~L~~-~g~~v~~a-~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp~~~g~~ll~ 104 (233)
+++++|.||.--..-...+...|.. .++++..+ +...+..+.+. .... ..-.. .+--+++.
T Consensus 3 M~~~rigiIG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~~~a----------~~~~-~~~~~------~~~~~ll~ 65 (359)
T 3m2t_A 3 LSLIKVGLVGIGAQMQENLLPSLLQMQDIRIVAACDSDLERARRVH----------RFIS-DIPVL------DNVPAMLN 65 (359)
T ss_dssp CCCEEEEEECCSHHHHHTHHHHHHTCTTEEEEEEECSSHHHHGGGG----------GTSC-SCCEE------SSHHHHHH
T ss_pred CCcceEEEECCCHHHHHHHHHHHHhCCCcEEEEEEcCCHHHHHHHH----------HhcC-CCccc------CCHHHHhc
Confidence 3579999999887655433334444 36777644 33333333221 1110 11111 12223333
Q ss_pred HHhccCCCCCCcEEEEeCCC--cHHHHHHHHHcCCceEEeCCC--CHHHHHHHHHHHhh
Q 026776 105 KIKDSSALREIPVVIMSSEN--ILARIDRCLEDGAEDFIVKPV--KLSDVKRIKDYLTR 159 (233)
Q Consensus 105 ~Lr~~~~~~~~piIvlt~~~--~~~~~~~al~~Ga~dyL~KP~--~~~eL~~~~~~l~~ 159 (233)
. . .+-+|+++... ..+.+..|+++|..=|+.||+ +.++..++++...+
T Consensus 66 ~---~----~vD~V~i~tp~~~H~~~~~~al~aGkhVl~EKPla~~~~e~~~l~~~a~~ 117 (359)
T 3m2t_A 66 Q---V----PLDAVVMAGPPQLHFEMGLLAMSKGVNVFVEKPPCATLEELETLIDAARR 117 (359)
T ss_dssp H---S----CCSEEEECSCHHHHHHHHHHHHHTTCEEEECSCSCSSHHHHHHHHHHHHH
T ss_pred C---C----CCCEEEEcCCcHHHHHHHHHHHHCCCeEEEECCCcCCHHHHHHHHHHHHH
Confidence 2 1 44455555443 356678899999999999995 45666666665544
No 210
>1eep_A Inosine 5'-monophosphate dehydrogenase; alpha-beta barrel, TIM barrel, IMPDH, IMP dehydrogenase, LOO purine biosynthesis, oxidoreductase; 2.40A {Borrelia burgdorferi} SCOP: c.1.5.1
Probab=59.48 E-value=84 Score=26.88 Aligned_cols=90 Identities=10% Similarity=0.180 Sum_probs=52.8
Q ss_pred HHHHHHHHHhhc-CCEEE--EECCHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCC-----------CCCCHHHHHHHH
Q 026776 41 DRKVIERLLTIS-SCKVT--AVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCM-----------PGMTGYELLKKI 106 (233)
Q Consensus 41 ~~~~l~~~L~~~-g~~v~--~a~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~m-----------p~~~g~~ll~~L 106 (233)
..+.++.+-+.. +..+. ...+.+++.... ....|.|.+...- .+.-.++.+..+
T Consensus 181 ~~e~i~~ir~~~~~~pviv~~v~~~~~a~~a~------------~~Gad~I~vg~~~G~~~~~~~~~~~g~p~~~~l~~v 248 (404)
T 1eep_A 181 IIELIKKIKTKYPNLDLIAGNIVTKEAALDLI------------SVGADCLKVGIGPGSICTTRIVAGVGVPQITAICDV 248 (404)
T ss_dssp HHHHHHHHHHHCTTCEEEEEEECSHHHHHHHH------------TTTCSEEEECSSCSTTSHHHHHHCCCCCHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCeEEEcCCCcHHHHHHHH------------hcCCCEEEECCCCCcCcCccccCCCCcchHHHHHHH
Confidence 333443333333 44444 355666665544 2357888882210 022245566666
Q ss_pred hccCCCCCCcEEEEeCCCcHHHHHHHHHcCCceEEe
Q 026776 107 KDSSALREIPVVIMSSENILARIDRCLEDGAEDFIV 142 (233)
Q Consensus 107 r~~~~~~~~piIvlt~~~~~~~~~~al~~Ga~dyL~ 142 (233)
++.....++|||...+-.+..++.+++.+||+.+..
T Consensus 249 ~~~~~~~~ipVia~GGI~~~~d~~~ala~GAd~V~i 284 (404)
T 1eep_A 249 YEACNNTNICIIADGGIRFSGDVVKAIAAGADSVMI 284 (404)
T ss_dssp HHHHTTSSCEEEEESCCCSHHHHHHHHHHTCSEEEE
T ss_pred HHHHhhcCceEEEECCCCCHHHHHHHHHcCCCHHhh
Confidence 542222378998877777888999999999998865
No 211
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=59.21 E-value=29 Score=25.91 Aligned_cols=66 Identities=12% Similarity=0.031 Sum_probs=33.8
Q ss_pred CcEEEEEeCCHHHHHHHHHHHhh--cCCEEEEECCHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCCCCCHHHHHHHH
Q 026776 29 EVHVLAVDDSFVDRKVIERLLTI--SSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKKI 106 (233)
Q Consensus 29 ~~~ILIVddd~~~~~~l~~~L~~--~g~~v~~a~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp~~~g~~ll~~L 106 (233)
+.+|++||-|+.. .+..++.. .++.+..... ....+.+.. ....||+||+|.. |.. +......+
T Consensus 30 g~~vlliD~D~~~--~~~~~~~~~~~~~~~~~~~~-~~l~~~l~~---------l~~~yD~viiD~~-~~~-~~~~~~~l 95 (206)
T 4dzz_A 30 GYNIAVVDTDPQM--SLTNWSKAGKAAFDVFTAAS-EKDVYGIRK---------DLADYDFAIVDGA-GSL-SVITSAAV 95 (206)
T ss_dssp TCCEEEEECCTTC--HHHHHHTTSCCSSEEEECCS-HHHHHTHHH---------HTTTSSEEEEECC-SSS-SHHHHHHH
T ss_pred CCeEEEEECCCCC--CHHHHHhcCCCCCcEEecCc-HHHHHHHHH---------hcCCCCEEEEECC-CCC-CHHHHHHH
Confidence 4679999987532 23344432 3456655544 222222211 1235999999974 233 33344444
Q ss_pred hc
Q 026776 107 KD 108 (233)
Q Consensus 107 r~ 108 (233)
..
T Consensus 96 ~~ 97 (206)
T 4dzz_A 96 MV 97 (206)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 212
>3tqv_A Nicotinate-nucleotide pyrophosphorylase; glycosyltransferase, transferase; 2.62A {Francisella tularensis subsp}
Probab=59.10 E-value=26 Score=29.01 Aligned_cols=67 Identities=12% Similarity=-0.008 Sum_probs=42.4
Q ss_pred EEEECCHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCCCCCHHHHHHHHhccCCCCCCcEEEEeCCCcHHHHHHHHHc
Q 026776 56 VTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKKIKDSSALREIPVVIMSSENILARIDRCLED 135 (233)
Q Consensus 56 v~~a~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp~~~g~~ll~~Lr~~~~~~~~piIvlt~~~~~~~~~~al~~ 135 (233)
.+.+++.+++.+.+. ...|+|.+|-.-| .+--++.+.++ . + ..+..++.-+.+.+.+..+.
T Consensus 202 eVEv~tl~ea~eAl~------------aGaD~I~LDn~~~-~~l~~av~~~~---~--~-v~ieaSGGIt~~~i~~~a~t 262 (287)
T 3tqv_A 202 EVEVTNLDELNQAIA------------AKADIVMLDNFSG-EDIDIAVSIAR---G--K-VALEVSGNIDRNSIVAIAKT 262 (287)
T ss_dssp EEEESSHHHHHHHHH------------TTCSEEEEESCCH-HHHHHHHHHHT---T--T-CEEEEESSCCTTTHHHHHTT
T ss_pred EEEeCCHHHHHHHHH------------cCCCEEEEcCCCH-HHHHHHHHhhc---C--C-ceEEEECCCCHHHHHHHHHc
Confidence 346889999988773 2489999995222 11222333332 1 3 45557777777778888889
Q ss_pred CCceEE
Q 026776 136 GAEDFI 141 (233)
Q Consensus 136 Ga~dyL 141 (233)
|+|.+-
T Consensus 263 GVD~Is 268 (287)
T 3tqv_A 263 GVDFIS 268 (287)
T ss_dssp TCSEEE
T ss_pred CCCEEE
Confidence 987653
No 213
>2tps_A Protein (thiamin phosphate synthase); thiamin biosynthesis, TIM barrel; HET: TPS; 1.25A {Bacillus subtilis} SCOP: c.1.3.1 PDB: 1g4t_A* 3o15_A* 1g6c_A* 1g4e_A* 1g69_A* 3o16_A 1g4s_A* 1g4p_A* 1g67_A*
Probab=58.56 E-value=47 Score=25.57 Aligned_cols=56 Identities=16% Similarity=0.338 Sum_probs=37.0
Q ss_pred cccEEEEcCCCC--------CCCHHHHHHHHhccCCCCCCcEEEEeCCCcHHHHHHHHHcCCceEEe
Q 026776 84 KVDLIITDYCMP--------GMTGYELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIV 142 (233)
Q Consensus 84 ~~DlvllD~~mp--------~~~g~~ll~~Lr~~~~~~~~piIvlt~~~~~~~~~~al~~Ga~dyL~ 142 (233)
.+|.|++....+ ...|++.++++++... .+|+++..+-. .+.+.++++.|++++..
T Consensus 136 g~d~v~~~~v~~t~~~~~~~~~~~~~~l~~~~~~~~--~~pvia~GGI~-~~nv~~~~~~Ga~gv~v 199 (227)
T 2tps_A 136 GADYVGLGPIYPTETKKDTRAVQGVSLIEAVRRQGI--SIPIVGIGGIT-IDNAAPVIQAGADGVSM 199 (227)
T ss_dssp TCSEEEECCSSCCCSSSSCCCCCTTHHHHHHHHTTC--CCCEEEESSCC-TTTSHHHHHTTCSEEEE
T ss_pred CCCEEEECCCcCCCCCCCCCCccCHHHHHHHHHhCC--CCCEEEEcCCC-HHHHHHHHHcCCCEEEE
Confidence 478888632222 1236888899886532 48888776544 56667788899998854
No 214
>3okp_A GDP-mannose-dependent alpha-(1-6)-phosphatidylino monomannoside mannosyltransferase...; GT-B fold, alpha-mannosyltransferase; HET: GDD; 2.00A {Corynebacterium glutamicum} PDB: 3okc_A* 3oka_A*
Probab=58.54 E-value=25 Score=28.98 Aligned_cols=65 Identities=11% Similarity=0.086 Sum_probs=41.1
Q ss_pred ccEEEEcCCC------CCCCHHHHHHHHhccCCCCCCcEEEEeCCCcHHHHHHHHHcCCceEEeCCCCHHHHHHHHHHHh
Q 026776 85 VDLIITDYCM------PGMTGYELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVKLSDVKRIKDYLT 158 (233)
Q Consensus 85 ~DlvllD~~m------p~~~g~~ll~~Lr~~~~~~~~piIvlt~~~~~~~~~~al~~Ga~dyL~KP~~~~eL~~~~~~l~ 158 (233)
.|++++-... .+.-|..+++.+.. .+|+|+. .... ..+.+..| .+++..+.+.+++.+.+..+.
T Consensus 273 ad~~v~ps~~~~~~~~~e~~~~~~~Ea~a~-----G~PvI~~-~~~~---~~e~i~~~-~g~~~~~~d~~~l~~~i~~l~ 342 (394)
T 3okp_A 273 ADIFAMPARTRGGGLDVEGLGIVYLEAQAC-----GVPVIAG-TSGG---APETVTPA-TGLVVEGSDVDKLSELLIELL 342 (394)
T ss_dssp CSEEEECCCCBGGGTBCCSSCHHHHHHHHT-----TCCEEEC-SSTT---GGGGCCTT-TEEECCTTCHHHHHHHHHHHH
T ss_pred CCEEEecCccccccccccccCcHHHHHHHc-----CCCEEEe-CCCC---hHHHHhcC-CceEeCCCCHHHHHHHHHHHH
Confidence 5777764333 14446667777653 6777753 3322 22345567 899999999999987776664
Q ss_pred h
Q 026776 159 R 159 (233)
Q Consensus 159 ~ 159 (233)
.
T Consensus 343 ~ 343 (394)
T 3okp_A 343 D 343 (394)
T ss_dssp T
T ss_pred h
Confidence 3
No 215
>3dr5_A Putative O-methyltransferase; Q8NRD3, CGL1119, PF01596, CGR117, NESG, structural genomics, PSI-2, protein structure initiative; 2.25A {Corynebacterium glutamicum}
Probab=58.36 E-value=24 Score=27.48 Aligned_cols=66 Identities=9% Similarity=0.040 Sum_probs=43.2
Q ss_pred CcEEEEEeCCHHHHHHHHHHHhhcCCE---EEE-ECCHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCCCCCHHHHHH
Q 026776 29 EVHVLAVDDSFVDRKVIERLLTISSCK---VTA-VDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLK 104 (233)
Q Consensus 29 ~~~ILIVddd~~~~~~l~~~L~~~g~~---v~~-a~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp~~~g~~ll~ 104 (233)
.-+|..||-++...+..++.++..|+. +.. ..+..+.+..+ ....||+|++|..... -.++++
T Consensus 81 ~~~v~~vD~~~~~~~~a~~~~~~~g~~~~~i~~~~gda~~~l~~~-----------~~~~fD~V~~d~~~~~--~~~~l~ 147 (221)
T 3dr5_A 81 NTTLTCIDPESEHQRQAKALFREAGYSPSRVRFLLSRPLDVMSRL-----------ANDSYQLVFGQVSPMD--LKALVD 147 (221)
T ss_dssp TSEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHGGGS-----------CTTCEEEEEECCCTTT--HHHHHH
T ss_pred CCEEEEEECCHHHHHHHHHHHHHcCCCcCcEEEEEcCHHHHHHHh-----------cCCCcCeEEEcCcHHH--HHHHHH
Confidence 357999999999999999998887653 444 34554443322 2357999999975433 333454
Q ss_pred HHh
Q 026776 105 KIK 107 (233)
Q Consensus 105 ~Lr 107 (233)
.+.
T Consensus 148 ~~~ 150 (221)
T 3dr5_A 148 AAW 150 (221)
T ss_dssp HHH
T ss_pred HHH
Confidence 443
No 216
>2ixa_A Alpha-N-acetylgalactosaminidase; NAD, A-ECO conversion, hydrolase; HET: NAD; 2.3A {Flavobacterium meningosepticum} PDB: 2ixb_A*
Probab=58.08 E-value=92 Score=26.89 Aligned_cols=118 Identities=9% Similarity=-0.015 Sum_probs=59.3
Q ss_pred CCCCcEEEEEeCCHHHHHHHHHHHhhcCCEEEEE-CCHHHHHHHhhhhhhhhccCCCCCc-ccEEEEcCCCCCCCHHHHH
Q 026776 26 DTEEVHVLAVDDSFVDRKVIERLLTISSCKVTAV-DSGRRALQFLGLDEEQSINGFDGLK-VDLIITDYCMPGMTGYELL 103 (233)
Q Consensus 26 ~~~~~~ILIVddd~~~~~~l~~~L~~~g~~v~~a-~~~~~al~~l~~~~~~~~~~~~~~~-~DlvllD~~mp~~~g~~ll 103 (233)
.+++++|.||.--..-...+..+....++++..+ +...+..+.+...- .... ++.-+.+- ...+ .
T Consensus 17 ~~~~~rvgiIG~G~~g~~h~~~l~~~~~~~lvav~d~~~~~~~~~a~~~-------~~~g~~~~~~~~~--~~~~----~ 83 (444)
T 2ixa_A 17 NPKKVRIAFIAVGLRGQTHVENMARRDDVEIVAFADPDPYMVGRAQEIL-------KKNGKKPAKVFGN--GNDD----Y 83 (444)
T ss_dssp --CCEEEEEECCSHHHHHHHHHHHTCTTEEEEEEECSCHHHHHHHHHHH-------HHTTCCCCEEECS--STTT----H
T ss_pred CCCCceEEEEecCHHHHHHHHHHHhCCCcEEEEEEeCCHHHHHHHHHHH-------HhcCCCCCceecc--CCCC----H
Confidence 3567999999877655555554444346776544 32222222221000 0000 11112210 0112 2
Q ss_pred HHHhccCCCCCCcEEEEeCCC--cHHHHHHHHHcCCceEEeCCCC--HHHHHHHHHHHhh
Q 026776 104 KKIKDSSALREIPVVIMSSEN--ILARIDRCLEDGAEDFIVKPVK--LSDVKRIKDYLTR 159 (233)
Q Consensus 104 ~~Lr~~~~~~~~piIvlt~~~--~~~~~~~al~~Ga~dyL~KP~~--~~eL~~~~~~l~~ 159 (233)
+.+-+. . .+-+|+++... ..+.+..|+++|..=|+.||+. .++..++++...+
T Consensus 84 ~~ll~~-~--~vD~V~i~tp~~~h~~~~~~al~aGkhV~~EKP~a~~~~ea~~l~~~a~~ 140 (444)
T 2ixa_A 84 KNMLKD-K--NIDAVFVSSPWEWHHEHGVAAMKAGKIVGMEVSGAITLEECWDYVKVSEQ 140 (444)
T ss_dssp HHHTTC-T--TCCEEEECCCGGGHHHHHHHHHHTTCEEEECCCCCSSHHHHHHHHHHHHH
T ss_pred HHHhcC-C--CCCEEEEcCCcHHHHHHHHHHHHCCCeEEEeCCCcCCHHHHHHHHHHHHH
Confidence 222221 1 44455554433 4567788999999999999964 6666666655543
No 217
>3l0g_A Nicotinate-nucleotide pyrophosphorylase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography; 2.05A {Ehrlichia chaffeensis}
Probab=58.04 E-value=18 Score=30.18 Aligned_cols=68 Identities=15% Similarity=0.084 Sum_probs=43.7
Q ss_pred EEEEECCHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCCCCCHHHHHHHHhccCCCCCCcEEEEeCCCcHHHHHHHHH
Q 026776 55 KVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKKIKDSSALREIPVVIMSSENILARIDRCLE 134 (233)
Q Consensus 55 ~v~~a~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp~~~g~~ll~~Lr~~~~~~~~piIvlt~~~~~~~~~~al~ 134 (233)
..+.+++.+++.+.+. ...|+|++|- |+..+--++++.++ .-..+..++.-+.+.+.+..+
T Consensus 210 IeVEv~tl~e~~eAl~------------aGaDiImLDn-~s~~~l~~av~~~~------~~v~leaSGGIt~~~i~~~A~ 270 (300)
T 3l0g_A 210 IAIECDNISQVEESLS------------NNVDMILLDN-MSISEIKKAVDIVN------GKSVLEVSGCVNIRNVRNIAL 270 (300)
T ss_dssp EEEEESSHHHHHHHHH------------TTCSEEEEES-CCHHHHHHHHHHHT------TSSEEEEESSCCTTTHHHHHT
T ss_pred EEEEECCHHHHHHHHH------------cCCCEEEECC-CCHHHHHHHHHhhc------CceEEEEECCCCHHHHHHHHH
Confidence 3446889999988873 2489999994 32222222333333 224566777777777878888
Q ss_pred cCCceEE
Q 026776 135 DGAEDFI 141 (233)
Q Consensus 135 ~Ga~dyL 141 (233)
.|+|.+-
T Consensus 271 tGVD~Is 277 (300)
T 3l0g_A 271 TGVDYIS 277 (300)
T ss_dssp TTCSEEE
T ss_pred cCCCEEE
Confidence 8987553
No 218
>3kux_A Putative oxidoreductase; oxidoreductase family, csgid, structural genomics, center FO structural genomics of infectious diseases; HET: MSE; 2.75A {Yersinia pestis}
Probab=57.91 E-value=76 Score=26.30 Aligned_cols=46 Identities=20% Similarity=0.353 Sum_probs=31.9
Q ss_pred CCcEEEEeCC--CcHHHHHHHHHcCCceEEeCC--CCHHHHHHHHHHHhh
Q 026776 114 EIPVVIMSSE--NILARIDRCLEDGAEDFIVKP--VKLSDVKRIKDYLTR 159 (233)
Q Consensus 114 ~~piIvlt~~--~~~~~~~~al~~Ga~dyL~KP--~~~~eL~~~~~~l~~ 159 (233)
.+-+|+++.. ...+.+..|+++|..=|+.|| .+.++..++++...+
T Consensus 67 ~vD~V~i~tp~~~H~~~~~~al~aGkhV~~EKPla~~~~e~~~l~~~a~~ 116 (352)
T 3kux_A 67 SIDLIVIPTPNDTHFPLAQSALAAGKHVVVDKPFTVTLSQANALKEHADD 116 (352)
T ss_dssp SCCEEEECSCTTTHHHHHHHHHHTTCEEEECSSCCSCHHHHHHHHHHHHH
T ss_pred CCCEEEEeCChHHHHHHHHHHHHCCCcEEEECCCcCCHHHHHHHHHHHHH
Confidence 4445555443 345677889999999999999 456677777666554
No 219
>4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor}
Probab=57.75 E-value=18 Score=32.23 Aligned_cols=56 Identities=11% Similarity=0.138 Sum_probs=42.2
Q ss_pred cccEEEEcCCCCCCC-HHHHHHHHhccCCCCCCcEEEEeCCCcHHHHHHHHHcCCceEEe
Q 026776 84 KVDLIITDYCMPGMT-GYELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIV 142 (233)
Q Consensus 84 ~~DlvllD~~mp~~~-g~~ll~~Lr~~~~~~~~piIvlt~~~~~~~~~~al~~Ga~dyL~ 142 (233)
.+|+|.+|...+... -+++++++++..+ .+||++- .-...+.+..+.++|++.+..
T Consensus 243 G~d~I~id~a~g~~~~~~~~i~~ir~~~p--~~~Vi~g-~v~t~e~a~~l~~aGaD~I~V 299 (496)
T 4fxs_A 243 GVDVLLIDSSHGHSEGVLQRIRETRAAYP--HLEIIGG-NVATAEGARALIEAGVSAVKV 299 (496)
T ss_dssp TCSEEEEECSCTTSHHHHHHHHHHHHHCT--TCCEEEE-EECSHHHHHHHHHHTCSEEEE
T ss_pred cCceEEeccccccchHHHHHHHHHHHHCC--CceEEEc-ccCcHHHHHHHHHhCCCEEEE
Confidence 589999998877543 4688999988654 6777762 234567788899999998875
No 220
>2fpo_A Methylase YHHF; structural genomics, putative methyltransferase, PSI, protei structure initiative; HET: MSE; 2.05A {Escherichia coli} SCOP: c.66.1.46
Probab=57.39 E-value=51 Score=24.89 Aligned_cols=66 Identities=9% Similarity=0.024 Sum_probs=43.0
Q ss_pred EEEEEeCCHHHHHHHHHHHhhcCC-EEEE-ECCHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCCCCCHHHHHHHHhc
Q 026776 31 HVLAVDDSFVDRKVIERLLTISSC-KVTA-VDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKKIKD 108 (233)
Q Consensus 31 ~ILIVddd~~~~~~l~~~L~~~g~-~v~~-a~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp~~~g~~ll~~Lr~ 108 (233)
+|..||-++...+..++.++..+. .+.. ..+..+.+.. ....||+|++|.........++++.+..
T Consensus 79 ~V~~vD~s~~~l~~a~~~~~~~~~~~v~~~~~D~~~~~~~------------~~~~fD~V~~~~p~~~~~~~~~l~~l~~ 146 (202)
T 2fpo_A 79 GATLIEMDRAVSQQLIKNLATLKAGNARVVNSNAMSFLAQ------------KGTPHNIVFVDPPFRRGLLEETINLLED 146 (202)
T ss_dssp EEEEECSCHHHHHHHHHHHHHTTCCSEEEECSCHHHHHSS------------CCCCEEEEEECCSSSTTTHHHHHHHHHH
T ss_pred EEEEEECCHHHHHHHHHHHHHcCCCcEEEEECCHHHHHhh------------cCCCCCEEEECCCCCCCcHHHHHHHHHh
Confidence 789999999888888888877764 3333 3344333211 2346999999865334455567777754
No 221
>2w6r_A Imidazole glycerol phosphate synthase subunit HISF; lyase, fusion protein, cobalamin, precorrin, novel fold, VIT; 2.10A {Thermotoga maritima}
Probab=57.04 E-value=23 Score=28.24 Aligned_cols=42 Identities=10% Similarity=0.300 Sum_probs=33.4
Q ss_pred HHHHHHHhccCCCCCCcEEEEeCCCcHHHHHHHHHcCCceEEeCC
Q 026776 100 YELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKP 144 (233)
Q Consensus 100 ~~ll~~Lr~~~~~~~~piIvlt~~~~~~~~~~al~~Ga~dyL~KP 144 (233)
+++++.+++.. .+|+++...-.+.+.+..+++.|++.++.=-
T Consensus 63 ~~~i~~i~~~~---~iPvi~~ggi~~~~~i~~~~~~Gad~v~lg~ 104 (266)
T 2w6r_A 63 TEMIRFVRPLT---TLPIIASGGAGKMEHFLEAFLAGADKALAAS 104 (266)
T ss_dssp HHHHHHHGGGC---CSCEEEESCCCSTHHHHHHHHHTCSEEECCC
T ss_pred HHHHHHHHHhc---CCCEEEECCCCCHHHHHHHHHcCCcHhhhhH
Confidence 78888888642 7899987766677778889999999987754
No 222
>2iw1_A Lipopolysaccharide core biosynthesis protein RFAG; transferase, lipopolysaccharide biosynthesis, family GT-4, glycosyltransferase, LPS; HET: U2F; 1.5A {Escherichia coli} SCOP: c.87.1.8 PDB: 2iv7_A*
Probab=56.99 E-value=57 Score=26.54 Aligned_cols=65 Identities=15% Similarity=0.259 Sum_probs=41.9
Q ss_pred ccEEEEcCCCCCCCHHHHHHHHhccCCCCCCcEEEEeCCCcHHHHHHHHHcCCceEEeC-CCCHHHHHHHHHHHhh
Q 026776 85 VDLIITDYCMPGMTGYELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVK-PVKLSDVKRIKDYLTR 159 (233)
Q Consensus 85 ~DlvllD~~mp~~~g~~ll~~Lr~~~~~~~~piIvlt~~~~~~~~~~al~~Ga~dyL~K-P~~~~eL~~~~~~l~~ 159 (233)
.|++++-.. .+.-|..+++.+.. .+|+|+....+.. +.+..|..+++.. |.+.+++.+.+..+..
T Consensus 271 ad~~v~ps~-~e~~~~~~~Ea~a~-----G~Pvi~~~~~~~~----e~i~~~~~g~~~~~~~~~~~l~~~i~~l~~ 336 (374)
T 2iw1_A 271 ADLLLHPAY-QEAAGIVLLEAITA-----GLPVLTTAVCGYA----HYIADANCGTVIAEPFSQEQLNEVLRKALT 336 (374)
T ss_dssp CSEEEECCS-CCSSCHHHHHHHHH-----TCCEEEETTSTTT----HHHHHHTCEEEECSSCCHHHHHHHHHHHHH
T ss_pred cCEEEeccc-cCCcccHHHHHHHC-----CCCEEEecCCCch----hhhccCCceEEeCCCCCHHHHHHHHHHHHc
Confidence 567776432 23446677777754 6788765433322 3455567889997 8999999877766653
No 223
>3r2g_A Inosine 5'-monophosphate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.94A {Legionella pneumophila subsp}
Probab=56.97 E-value=20 Score=30.62 Aligned_cols=56 Identities=14% Similarity=0.045 Sum_probs=39.5
Q ss_pred cccEEEEcCCCCCCC-HHHHHHHHhccCCCCCCcEEEEeCCCcHHHHHHHHHcCCceEEe
Q 026776 84 KVDLIITDYCMPGMT-GYELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIV 142 (233)
Q Consensus 84 ~~DlvllD~~mp~~~-g~~ll~~Lr~~~~~~~~piIvlt~~~~~~~~~~al~~Ga~dyL~ 142 (233)
.+|+|.+|....... -++.+++||+..+ .++||+= .-.+.+.+..+.++|+|....
T Consensus 112 GvdvI~id~a~G~~~~~~e~I~~ir~~~~--~~~Vi~G-~V~T~e~A~~a~~aGaD~I~V 168 (361)
T 3r2g_A 112 GADFFCVDVAHAHAKYVGKTLKSLRQLLG--SRCIMAG-NVATYAGADYLASCGADIIKA 168 (361)
T ss_dssp TCCEEEEECSCCSSHHHHHHHHHHHHHHT--TCEEEEE-EECSHHHHHHHHHTTCSEEEE
T ss_pred CCCEEEEeCCCCCcHhHHHHHHHHHHhcC--CCeEEEc-CcCCHHHHHHHHHcCCCEEEE
Confidence 589999997654332 3578889988643 6777761 123567788899999998875
No 224
>2p10_A MLL9387 protein; putative phosphonopyruvate hydrolase, structural genomics, J center for structural genomics, JCSG; HET: MSE; 2.15A {Mesorhizobium loti} SCOP: c.1.12.9
Probab=56.17 E-value=62 Score=26.68 Aligned_cols=81 Identities=14% Similarity=0.149 Sum_probs=50.3
Q ss_pred hhcC-CEEEEECCHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCC--CCCH----------HHHHH----HHhccCCC
Q 026776 50 TISS-CKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMP--GMTG----------YELLK----KIKDSSAL 112 (233)
Q Consensus 50 ~~~g-~~v~~a~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp--~~~g----------~~ll~----~Lr~~~~~ 112 (233)
++.| +.+.++.+.+++..+.. ..+|+|++...+- +.-| .+.++ ..++..+
T Consensus 160 ~~~gL~Ti~~v~~~eeA~amA~------------agpDiI~~h~glT~gglIG~~~avs~~~~~e~i~~i~~a~~~vnp- 226 (286)
T 2p10_A 160 HKLDLLTTPYVFSPEDAVAMAK------------AGADILVCHMGLTTGGAIGARSGKSMDDCVSLINECIEAARTIRD- 226 (286)
T ss_dssp HHTTCEECCEECSHHHHHHHHH------------HTCSEEEEECSCC---------CCCHHHHHHHHHHHHHHHHHHCS-
T ss_pred HHCCCeEEEecCCHHHHHHHHH------------cCCCEEEECCCCCCCCcccCCCcccHHHhHHHHHHHHHHHHHhCC-
Confidence 3456 46778999999987763 3589999976543 2212 22333 3344333
Q ss_pred CCCcEEEEe-CCCcHHHHHHHHHc--CCceEEeCC
Q 026776 113 REIPVVIMS-SENILARIDRCLED--GAEDFIVKP 144 (233)
Q Consensus 113 ~~~piIvlt-~~~~~~~~~~al~~--Ga~dyL~KP 144 (233)
++.++.-. .-...+++..+++. |+++|+.-.
T Consensus 227 -dvivLc~gGpIstpeDv~~~l~~t~G~~G~~gAS 260 (286)
T 2p10_A 227 -DIIILSHGGPIANPEDARFILDSCQGCHGFYGAS 260 (286)
T ss_dssp -CCEEEEESTTCCSHHHHHHHHHHCTTCCEEEESH
T ss_pred -CcEEEecCCCCCCHHHHHHHHhcCCCccEEEeeh
Confidence 44333333 22567888999998 999999854
No 225
>1y0e_A Putative N-acetylmannosamine-6-phosphate 2-epimer; mannac-6-P epimerase, NANE, structural genomics, protein STR initiative, PSI; 1.95A {Staphylococcus aureus subsp} SCOP: c.1.2.5
Probab=55.48 E-value=68 Score=24.59 Aligned_cols=42 Identities=17% Similarity=0.231 Sum_probs=33.5
Q ss_pred HHHHHHHHhccCCCCCCcEEEEeCCCcHHHHHHHHHcCCceEEeC
Q 026776 99 GYELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVK 143 (233)
Q Consensus 99 g~~ll~~Lr~~~~~~~~piIvlt~~~~~~~~~~al~~Ga~dyL~K 143 (233)
+++.++++++.. .+|+++..+-.+.+.+.++++.|++.++.=
T Consensus 163 ~~~~~~~~~~~~---~ipvia~GGI~~~~~~~~~~~~Gad~v~vG 204 (223)
T 1y0e_A 163 DFQFLKDVLQSV---DAKVIAEGNVITPDMYKRVMDLGVHCSVVG 204 (223)
T ss_dssp HHHHHHHHHHHC---CSEEEEESSCCSHHHHHHHHHTTCSEEEEC
T ss_pred cHHHHHHHHhhC---CCCEEEecCCCCHHHHHHHHHcCCCEEEEC
Confidence 456788887642 688888877768889999999999998764
No 226
>1o4u_A Type II quinolic acid phosphoribosyltransferase; structural genomics, joint center for structural genomics, J protein structure initiative; 2.50A {Thermotoga maritima} SCOP: c.1.17.1 d.41.2.1
Probab=55.43 E-value=38 Score=27.91 Aligned_cols=57 Identities=14% Similarity=0.193 Sum_probs=42.6
Q ss_pred HHHHHHHhccCCCCCCcEEEEeCCCcHHHHHHHHHcCCceEEeCCCCHHHHHHHHHHHhh
Q 026776 100 YELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVKLSDVKRIKDYLTR 159 (233)
Q Consensus 100 ~~ll~~Lr~~~~~~~~piIvlt~~~~~~~~~~al~~Ga~dyL~KP~~~~eL~~~~~~l~~ 159 (233)
.+.++..|+..+ ...+|.+-.. +.+++.+++++|+|.+++-.++++++.++++.+..
T Consensus 180 ~~av~~ar~~~~-~~~~I~VEV~--tleea~eA~~aGaD~I~LDn~~~e~l~~av~~l~~ 236 (285)
T 1o4u_A 180 ERAVQEVRKIIP-FTTKIEVEVE--NLEDALRAVEAGADIVMLDNLSPEEVKDISRRIKD 236 (285)
T ss_dssp HHHHHHHHTTSC-TTSCEEEEES--SHHHHHHHHHTTCSEEEEESCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCC-CCceEEEEeC--CHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHhhc
Confidence 456777777654 2255655443 46888899999999999999999999888877653
No 227
>1wa3_A 2-keto-3-deoxy-6-phosphogluconate aldolase; KDPG, pyruvate, lyase; 1.9A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 1vlw_A
Probab=55.02 E-value=66 Score=24.32 Aligned_cols=62 Identities=18% Similarity=0.270 Sum_probs=37.8
Q ss_pred cccEEEEcCCCCCCCHHHHHHHHhccCCCCCCcEEEEeCCCcHHHHHHHHHcCCceEEeCCCCHHHH
Q 026776 84 KVDLIITDYCMPGMTGYELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVKLSDV 150 (233)
Q Consensus 84 ~~DlvllD~~mp~~~g~~ll~~Lr~~~~~~~~piIvlt~~~~~~~~~~al~~Ga~dyL~KP~~~~eL 150 (233)
..++|-+.+..+ ++.+.++.+|+..+ .-.+|.+..-.+.+....+.+.|+|.+ .-|....++
T Consensus 35 G~~~iev~~~~~--~~~~~i~~ir~~~~--~~~~ig~~~v~~~~~~~~a~~~Gad~i-v~~~~~~~~ 96 (205)
T 1wa3_A 35 GVHLIEITFTVP--DADTVIKELSFLKE--KGAIIGAGTVTSVEQCRKAVESGAEFI-VSPHLDEEI 96 (205)
T ss_dssp TCCEEEEETTST--THHHHHHHTHHHHH--TTCEEEEESCCSHHHHHHHHHHTCSEE-ECSSCCHHH
T ss_pred CCCEEEEeCCCh--hHHHHHHHHHHHCC--CCcEEEecccCCHHHHHHHHHcCCCEE-EcCCCCHHH
Confidence 356666655544 56778888887532 112344433345677888999999877 556544444
No 228
>3db2_A Putative NADPH-dependent oxidoreductase; two domain protein, rossman fold, putative dehydrogenase, ST genomics; 1.70A {Desulfitobacterium hafniense dcb-2}
Probab=54.99 E-value=34 Score=28.56 Aligned_cols=105 Identities=20% Similarity=0.298 Sum_probs=56.3
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHhhc-CCEEEEE-CCHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCCC-CCHHHHHH
Q 026776 28 EEVHVLAVDDSFVDRKVIERLLTIS-SCKVTAV-DSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPG-MTGYELLK 104 (233)
Q Consensus 28 ~~~~ILIVddd~~~~~~l~~~L~~~-g~~v~~a-~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp~-~~g~~ll~ 104 (233)
++++|.||.--..-...+. .|... ++++..+ +...+..+.+.. .+.+ +. .+--+++
T Consensus 4 ~~~~vgiiG~G~~g~~~~~-~l~~~~~~~lvav~d~~~~~~~~~~~------------~~g~-------~~~~~~~~~l- 62 (354)
T 3db2_A 4 NPVGVAAIGLGRWAYVMAD-AYTKSEKLKLVTCYSRTEDKREKFGK------------RYNC-------AGDATMEALL- 62 (354)
T ss_dssp CCEEEEEECCSHHHHHHHH-HHTTCSSEEEEEEECSSHHHHHHHHH------------HHTC-------CCCSSHHHHH-
T ss_pred CcceEEEEccCHHHHHHHH-HHHhCCCcEEEEEECCCHHHHHHHHH------------HcCC-------CCcCCHHHHh-
Confidence 5689999988765444444 44444 7776644 322222222210 1111 11 1222222
Q ss_pred HHhccCCCCCCcEEEEeCC--CcHHHHHHHHHcCCceEEeCCCC--HHHHHHHHHHHhh
Q 026776 105 KIKDSSALREIPVVIMSSE--NILARIDRCLEDGAEDFIVKPVK--LSDVKRIKDYLTR 159 (233)
Q Consensus 105 ~Lr~~~~~~~~piIvlt~~--~~~~~~~~al~~Ga~dyL~KP~~--~~eL~~~~~~l~~ 159 (233)
... .+-+|+++.. ...+.+..++++|..=|+.||+. .++..++.+...+
T Consensus 63 --~~~----~~D~V~i~tp~~~h~~~~~~al~~gk~vl~EKP~~~~~~~~~~l~~~a~~ 115 (354)
T 3db2_A 63 --ARE----DVEMVIITVPNDKHAEVIEQCARSGKHIYVEKPISVSLDHAQRIDQVIKE 115 (354)
T ss_dssp --HCS----SCCEEEECSCTTSHHHHHHHHHHTTCEEEEESSSCSSHHHHHHHHHHHHH
T ss_pred --cCC----CCCEEEEeCChHHHHHHHHHHHHcCCEEEEccCCCCCHHHHHHHHHHHHH
Confidence 221 3444444433 34567788999999999999954 5666666665544
No 229
>3gnn_A Nicotinate-nucleotide pyrophosphorylase; decode biostructures, ssgcid, niaid, SBRI, UWPPG, glycosyltransferase, transferase, structural genomics; 2.25A {Burkholderia pseudomallei}
Probab=54.97 E-value=24 Score=29.34 Aligned_cols=69 Identities=19% Similarity=0.206 Sum_probs=41.9
Q ss_pred ccEEEE-cCCCCCC-CHHHHHHHHhccCCCCCCcEEEEeCCCcHHHHHHHHHcCCceEEeCCCCHHHHHHHHHHH
Q 026776 85 VDLIIT-DYCMPGM-TGYELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVKLSDVKRIKDYL 157 (233)
Q Consensus 85 ~Dlvll-D~~mp~~-~g~~ll~~Lr~~~~~~~~piIvlt~~~~~~~~~~al~~Ga~dyL~KP~~~~eL~~~~~~l 157 (233)
+|.|++ |-++--. +--+.++.+|+..+ ..+|.+.... .+++.+++++|+|..++..++++++.++++.+
T Consensus 180 ~d~vlikdNHi~~~G~i~~Av~~~r~~~p--~~~ieVEvdt--lde~~eAl~aGaD~I~LDn~~~~~l~~av~~i 250 (298)
T 3gnn_A 180 YAGILIKENHIAAAGGVGEALDAAFALNA--EVPVQIEVET--LDQLRTALAHGARSVLLDNFTLDMMRDAVRVT 250 (298)
T ss_dssp ---------------CHHHHHHHHHHHC----CCCEEEESS--HHHHHHHHHTTCEEEEEESCCHHHHHHHHHHH
T ss_pred CcEEEEeHHHHHHcCCHHHHHHHHHHhCC--CCCEEEEeCC--HHHHHHHHHcCCCEEEECCCCHHHHHHHHHHh
Confidence 455555 3322222 23456777777655 5677776544 35688899999999999999999998888766
No 230
>1qdl_B Protein (anthranilate synthase (TRPG-SUBUNIT)); tryptophan biosynthesis, glutamine amidotransferase, allosteric interaction, lyase; 2.50A {Sulfolobus solfataricus} SCOP: c.23.16.1
Probab=54.79 E-value=5 Score=30.85 Aligned_cols=31 Identities=10% Similarity=-0.007 Sum_probs=24.3
Q ss_pred EEEEeCCHHHHHHHHHHHhhcCCEEEEECCH
Q 026776 32 VLAVDDSFVDRKVIERLLTISSCKVTAVDSG 62 (233)
Q Consensus 32 ILIVddd~~~~~~l~~~L~~~g~~v~~a~~~ 62 (233)
|+|||....+...+.++|++.|+.+..+...
T Consensus 4 i~iid~~~s~~~~~~~~l~~~G~~~~v~~~~ 34 (195)
T 1qdl_B 4 TLIIDNYDSFVYNIAQIVGELGSYPIVIRND 34 (195)
T ss_dssp EEEEECSCSSHHHHHHHHHHTTCEEEEEETT
T ss_pred EEEEECCCchHHHHHHHHHhCCCEEEEEeCC
Confidence 9999976666667888999999888776643
No 231
>2q5c_A NTRC family transcriptional regulator; structural genomics, protein structure initiative; HET: SO4 GOL; 1.49A {Clostridium acetobutylicum atcc 824}
Probab=54.76 E-value=69 Score=24.48 Aligned_cols=119 Identities=11% Similarity=0.131 Sum_probs=65.3
Q ss_pred CcEEEEEeCCHHHHHHHHHHHhhcCCEEE-EECCHHHHHHHhhhhhhhhccCCCCCcccEEEEc----------CCCC--
Q 026776 29 EVHVLAVDDSFVDRKVIERLLTISSCKVT-AVDSGRRALQFLGLDEEQSINGFDGLKVDLIITD----------YCMP-- 95 (233)
Q Consensus 29 ~~~ILIVddd~~~~~~l~~~L~~~g~~v~-~a~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD----------~~mp-- 95 (233)
+.+|+++-..+.+...+++++.+.+.++. ...+.++++...+.. ...+|+||.- +..|
T Consensus 4 ~~~I~~iapy~~l~~~~~~i~~e~~~~i~i~~~~l~~~v~~a~~~---------~~~~dVIISRGgta~~lr~~~~iPVV 74 (196)
T 2q5c_A 4 SLKIALISQNENLLNLFPKLALEKNFIPITKTASLTRASKIAFGL---------QDEVDAIISRGATSDYIKKSVSIPSI 74 (196)
T ss_dssp CCEEEEEESCHHHHHHHHHHHHHHTCEEEEEECCHHHHHHHHHHH---------TTTCSEEEEEHHHHHHHHTTCSSCEE
T ss_pred CCcEEEEEccHHHHHHHHHHHhhhCCceEEEECCHHHHHHHHHHh---------cCCCeEEEECChHHHHHHHhCCCCEE
Confidence 46899999999999999988887766654 356788888776431 1245666521 1222
Q ss_pred --CCCHHHHHHHHhccCCCCCCcEEEEeCCC---cHHHHHHHHHcCCceEEeCCCCHHHHHHHHHHHhh
Q 026776 96 --GMTGYELLKKIKDSSALREIPVVIMSSEN---ILARIDRCLEDGAEDFIVKPVKLSDVKRIKDYLTR 159 (233)
Q Consensus 96 --~~~g~~ll~~Lr~~~~~~~~piIvlt~~~---~~~~~~~al~~Ga~dyL~KP~~~~eL~~~~~~l~~ 159 (233)
..+|+++++.|...... ...|-+++-.. ......+.+.....-|.. .+.+++...+..+.+
T Consensus 75 ~I~~s~~Dil~al~~a~~~-~~kIavvg~~~~~~~~~~~~~ll~~~i~~~~~--~~~~e~~~~i~~l~~ 140 (196)
T 2q5c_A 75 SIKVTRFDTMRAVYNAKRF-GNELALIAYKHSIVDKHEIEAMLGVKIKEFLF--SSEDEITTLISKVKT 140 (196)
T ss_dssp EECCCHHHHHHHHHHHGGG-CSEEEEEEESSCSSCHHHHHHHHTCEEEEEEE--CSGGGHHHHHHHHHH
T ss_pred EEcCCHhHHHHHHHHHHhh-CCcEEEEeCcchhhHHHHHHHHhCCceEEEEe--CCHHHHHHHHHHHHH
Confidence 34566666666443321 11333332221 233344444443333332 344566666665544
No 232
>3h2s_A Putative NADH-flavin reductase; Q03B84, NESG, LCR19, structural genomics, PSI-2, protein structure initiative; HET: NDP; 1.78A {Lactobacillus casei atcc 334}
Probab=54.53 E-value=25 Score=26.68 Aligned_cols=35 Identities=11% Similarity=-0.002 Sum_probs=26.6
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhcCCEEEEECCHHH
Q 026776 30 VHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRR 64 (233)
Q Consensus 30 ~~ILIVddd~~~~~~l~~~L~~~g~~v~~a~~~~~ 64 (233)
|+|||..-.-.+...+.+.|.+.|++|.......+
T Consensus 1 MkilVtGatG~iG~~l~~~L~~~g~~V~~~~R~~~ 35 (224)
T 3h2s_A 1 MKIAVLGATGRAGSAIVAEARRRGHEVLAVVRDPQ 35 (224)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHH
T ss_pred CEEEEEcCCCHHHHHHHHHHHHCCCEEEEEEeccc
Confidence 47899998888888888888788998877653333
No 233
>3lkz_A Non-structural protein 5; flavivirus, methyltransferase, inhibitor, P nucleotide-binding, RNA replication, viral protein; HET: SFG; 2.00A {West nile virus}
Probab=54.30 E-value=22 Score=29.81 Aligned_cols=65 Identities=17% Similarity=0.221 Sum_probs=43.1
Q ss_pred CCCcccEEEEcCCCCCCCHHHHHHHHhccCCCCCCcEEEEeCCCcHHHHHHHHHcCCceEEeCCCCH--HHHHHHHHHHh
Q 026776 81 DGLKVDLIITDYCMPGMTGYELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVKL--SDVKRIKDYLT 158 (233)
Q Consensus 81 ~~~~~DlvllD~~mp~~~g~~ll~~Lr~~~~~~~~piIvlt~~~~~~~~~~al~~Ga~dyL~KP~~~--~eL~~~~~~l~ 158 (233)
....+|+|++|+. ..+|...++..|... -.+.+.+.+..|...|+.|=+.+ .++.+.++.++
T Consensus 157 ~~~~~D~ivcDig--eSs~~~~ve~~Rtl~--------------vLel~~~wL~~~~~~f~~KVl~pY~~~v~e~l~~lq 220 (321)
T 3lkz_A 157 PSECCDTLLCDIG--ESSSSAEVEEHRTIR--------------VLEMVEDWLHRGPREFCVKVLCPYMPKVIEKMELLQ 220 (321)
T ss_dssp CCCCCSEEEECCC--CCCSCHHHHHHHHHH--------------HHHHHHHHHTTCCCEEEEEESCTTSHHHHHHHHHHH
T ss_pred CCCCCCEEEEECc--cCCCChhhhhhHHHH--------------HHHHHHHHhccCCCcEEEEEcCCCChHHHHHHHHHH
Confidence 3456899999987 666655555554321 23566778877877888887776 66656666665
Q ss_pred hhh
Q 026776 159 RDV 161 (233)
Q Consensus 159 ~~~ 161 (233)
+..
T Consensus 221 ~~f 223 (321)
T 3lkz_A 221 RRY 223 (321)
T ss_dssp HHH
T ss_pred HHh
Confidence 543
No 234
>2ift_A Putative methylase HI0767; NESG, Y767_haein, structural genomics, PSI-2, protein structure initiative; 2.30A {Haemophilus influenzae} SCOP: c.66.1.46
Probab=54.12 E-value=43 Score=25.30 Aligned_cols=68 Identities=10% Similarity=0.042 Sum_probs=41.9
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhcCC---EEEE-ECCHHHHHHHhhhhhhhhccCCCCCc-ccEEEEcCCCCCCCHHHHHH
Q 026776 30 VHVLAVDDSFVDRKVIERLLTISSC---KVTA-VDSGRRALQFLGLDEEQSINGFDGLK-VDLIITDYCMPGMTGYELLK 104 (233)
Q Consensus 30 ~~ILIVddd~~~~~~l~~~L~~~g~---~v~~-a~~~~~al~~l~~~~~~~~~~~~~~~-~DlvllD~~mp~~~g~~ll~ 104 (233)
-+|.-||-++...+..++.+...|. .+.. ..+..+.+..+ .... ||+|++|......+..++++
T Consensus 77 ~~v~gvD~s~~~l~~a~~~~~~~~~~~~~v~~~~~d~~~~~~~~-----------~~~~~fD~I~~~~~~~~~~~~~~l~ 145 (201)
T 2ift_A 77 KKVTFLELDKTVANQLKKNLQTLKCSSEQAEVINQSSLDFLKQP-----------QNQPHFDVVFLDPPFHFNLAEQAIS 145 (201)
T ss_dssp SEEEEECSCHHHHHHHHHHHHHTTCCTTTEEEECSCHHHHTTSC-----------CSSCCEEEEEECCCSSSCHHHHHHH
T ss_pred CEEEEEECCHHHHHHHHHHHHHhCCCccceEEEECCHHHHHHhh-----------ccCCCCCEEEECCCCCCccHHHHHH
Confidence 3788899998888888888776664 3433 33443322111 1346 99999986543334456677
Q ss_pred HHhc
Q 026776 105 KIKD 108 (233)
Q Consensus 105 ~Lr~ 108 (233)
.+.+
T Consensus 146 ~~~~ 149 (201)
T 2ift_A 146 LLCE 149 (201)
T ss_dssp HHHH
T ss_pred HHHh
Confidence 7643
No 235
>3p9n_A Possible methyltransferase (methylase); RV2966C, adoMet binding, RNA methylase, RSMD, SAM-fold, RNA methyltransferase; 1.90A {Mycobacterium tuberculosis}
Probab=54.00 E-value=63 Score=23.79 Aligned_cols=68 Identities=16% Similarity=0.058 Sum_probs=45.0
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhcCC-EE-EEECCHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCCC--CCHHHHHHH
Q 026776 30 VHVLAVDDSFVDRKVIERLLTISSC-KV-TAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPG--MTGYELLKK 105 (233)
Q Consensus 30 ~~ILIVddd~~~~~~l~~~L~~~g~-~v-~~a~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp~--~~g~~ll~~ 105 (233)
.+|.-||-++...+..++.++..+. .+ ....+..+..... ....+|+|++|.-... .+-.++++.
T Consensus 68 ~~v~~vD~~~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~~~-----------~~~~fD~i~~~~p~~~~~~~~~~~l~~ 136 (189)
T 3p9n_A 68 ASVLFVESDQRSAAVIARNIEALGLSGATLRRGAVAAVVAAG-----------TTSPVDLVLADPPYNVDSADVDAILAA 136 (189)
T ss_dssp SEEEEEECCHHHHHHHHHHHHHHTCSCEEEEESCHHHHHHHC-----------CSSCCSEEEECCCTTSCHHHHHHHHHH
T ss_pred CeEEEEECCHHHHHHHHHHHHHcCCCceEEEEccHHHHHhhc-----------cCCCccEEEECCCCCcchhhHHHHHHH
Confidence 4799999999988888888877664 23 3355665554433 2457999999854433 234456666
Q ss_pred Hhc
Q 026776 106 IKD 108 (233)
Q Consensus 106 Lr~ 108 (233)
+..
T Consensus 137 ~~~ 139 (189)
T 3p9n_A 137 LGT 139 (189)
T ss_dssp HHH
T ss_pred HHh
Confidence 655
No 236
>2c6q_A GMP reductase 2; TIM barrel, metal-binding, NADP, oxidoreductase, potassium; HET: IMP NDP; 1.70A {Homo sapiens} PDB: 2bzn_A* 2a7r_A* 2ble_A* 2bwg_A*
Probab=53.97 E-value=99 Score=26.04 Aligned_cols=103 Identities=12% Similarity=0.089 Sum_probs=59.6
Q ss_pred cEEEEEe----CCHHHHHHHHHHHhhc-CCEE--EEECCHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCCC------
Q 026776 30 VHVLAVD----DSFVDRKVIERLLTIS-SCKV--TAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPG------ 96 (233)
Q Consensus 30 ~~ILIVd----dd~~~~~~l~~~L~~~-g~~v--~~a~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp~------ 96 (233)
..++.++ +.....+.++.+-+.. +..+ ..+.+.+++..... ...|.|.+... ++
T Consensus 133 ~~~i~i~~~~g~~~~~~~~i~~lr~~~~~~~vi~g~v~t~e~A~~a~~------------aGaD~I~v~~g-~G~~~~~r 199 (351)
T 2c6q_A 133 VKYICLDVANGYSEHFVEFVKDVRKRFPQHTIMAGNVVTGEMVEELIL------------SGADIIKVGIG-PGSVCTTR 199 (351)
T ss_dssp CCEEEEECSCTTBHHHHHHHHHHHHHCTTSEEEEEEECSHHHHHHHHH------------TTCSEEEECSS-CSTTBCHH
T ss_pred CCEEEEEecCCCcHHHHHHHHHHHHhcCCCeEEEEeCCCHHHHHHHHH------------hCCCEEEECCC-CCcCcCcc
Confidence 3455554 2333444555444444 4433 34678888877652 24788877432 21
Q ss_pred ------CCHHHHHHHHhccCCCCCCcEEEEeCCCcHHHHHHHHHcCCceE-EeCCC
Q 026776 97 ------MTGYELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDF-IVKPV 145 (233)
Q Consensus 97 ------~~g~~ll~~Lr~~~~~~~~piIvlt~~~~~~~~~~al~~Ga~dy-L~KP~ 145 (233)
...+.++..+.+......+|||.-.+-.+..++.+++.+||+.+ +-++|
T Consensus 200 ~~~g~~~p~~~~l~~v~~~~~~~~ipvIa~GGI~~g~di~kAlalGA~~V~vG~~f 255 (351)
T 2c6q_A 200 KKTGVGYPQLSAVMECADAAHGLKGHIISDGGCSCPGDVAKAFGAGADFVMLGGML 255 (351)
T ss_dssp HHHCBCCCHHHHHHHHHHHHHHTTCEEEEESCCCSHHHHHHHHHTTCSEEEESTTT
T ss_pred ccCCCCccHHHHHHHHHHHHhhcCCcEEEeCCCCCHHHHHHHHHcCCCceeccHHH
Confidence 12233444443221112688888777788899999999999987 44555
No 237
>1x1o_A Nicotinate-nucleotide pyrophosphorylase; transferase, structural genomics, NPPSFA, national project O structural and functional analyses; 1.90A {Thermus thermophilus}
Probab=53.87 E-value=33 Score=28.29 Aligned_cols=55 Identities=16% Similarity=0.291 Sum_probs=39.0
Q ss_pred HHHHHHHhccCCCCCCcEEEEeCCCcHHHHHHHHHcCCceEEeCCCCHHHHHHHHHHH
Q 026776 100 YELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVKLSDVKRIKDYL 157 (233)
Q Consensus 100 ~~ll~~Lr~~~~~~~~piIvlt~~~~~~~~~~al~~Ga~dyL~KP~~~~eL~~~~~~l 157 (233)
.+.++..|+..+ ...+|.+ +. .+.+++.+++++|+|.++..++.++.++++++.+
T Consensus 183 ~~av~~ar~~~~-~~~~IgV-ev-~t~eea~eA~~aGaD~I~ld~~~~~~~k~av~~v 237 (286)
T 1x1o_A 183 GEAVRRAKARAP-HYLKVEV-EV-RSLEELEEALEAGADLILLDNFPLEALREAVRRV 237 (286)
T ss_dssp HHHHHHHHHHSC-TTSCEEE-EE-SSHHHHHHHHHHTCSEEEEESCCHHHHHHHHHHH
T ss_pred HHHHHHHHHhCC-CCCEEEE-Ee-CCHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHh
Confidence 345677776544 1234444 43 3467788999999999999999999988777655
No 238
>3i1j_A Oxidoreductase, short chain dehydrogenase/reducta; dimer, MIXE beta, structural genomics, PSI-2; 1.90A {Pseudomonas syringae PV} SCOP: c.2.1.0
Probab=53.31 E-value=74 Score=24.49 Aligned_cols=93 Identities=10% Similarity=0.045 Sum_probs=53.2
Q ss_pred CCCCCCCcEEEEEeCCHHHHHHHHHHHhhcCCEEEEECCHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCCCCCHH-H
Q 026776 23 SPSDTEEVHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGY-E 101 (233)
Q Consensus 23 ~~~~~~~~~ILIVddd~~~~~~l~~~L~~~g~~v~~a~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp~~~g~-~ 101 (233)
.+...+..++||..-...+...+.+.|.+.|+.|.......+.++.+...-.. .......++.+|+...+.+.+ +
T Consensus 8 ~~~~l~~k~vlITGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~----~~~~~~~~~~~d~d~~~~~~~~~ 83 (247)
T 3i1j_A 8 HPELLKGRVILVTGAARGIGAAAARAYAAHGASVVLLGRTEASLAEVSDQIKS----AGQPQPLIIALNLENATAQQYRE 83 (247)
T ss_dssp CTTTTTTCEEEESSTTSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHHHHH----TTSCCCEEEECCTTTCCHHHHHH
T ss_pred CCccCCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEecCHHHHHHHHHHHHh----cCCCCceEEEeccccCCHHHHHH
Confidence 33445567889999998899999999989999887765333333322111000 011234566667655554443 4
Q ss_pred HHHHHhccCCCCCCcEEEEe
Q 026776 102 LLKKIKDSSALREIPVVIMS 121 (233)
Q Consensus 102 ll~~Lr~~~~~~~~piIvlt 121 (233)
+++.+.+... .+-+++..
T Consensus 84 ~~~~~~~~~g--~id~lv~n 101 (247)
T 3i1j_A 84 LAARVEHEFG--RLDGLLHN 101 (247)
T ss_dssp HHHHHHHHHS--CCSEEEEC
T ss_pred HHHHHHHhCC--CCCEEEEC
Confidence 5555554432 45555554
No 239
>3jy6_A Transcriptional regulator, LACI family; NYSGXRC, PSI-II, protein S initiative, structural genomics; 1.97A {Lactobacillus brevis}
Probab=53.24 E-value=63 Score=25.23 Aligned_cols=38 Identities=18% Similarity=0.124 Sum_probs=17.4
Q ss_pred HHHHHHHHhccCCCCCCcEEEEeCCCc----HHHHHHHHHcCCce
Q 026776 99 GYELLKKIKDSSALREIPVVIMSSENI----LARIDRCLEDGAED 139 (233)
Q Consensus 99 g~~ll~~Lr~~~~~~~~piIvlt~~~~----~~~~~~al~~Ga~d 139 (233)
|..+++.|.+.+ ...|.+++.... .....+++...+.+
T Consensus 111 g~~a~~~L~~~G---~~~I~~i~~~~~~~~~~~~R~~gf~~~l~~ 152 (276)
T 3jy6_A 111 AKAATTAFRQQG---YQHVVVLTSELELSRTRQERYRGILAAAQD 152 (276)
T ss_dssp HHHHHHHHHTTT---CCEEEEEEECSTTCHHHHHHHHHHHTTCSE
T ss_pred HHHHHHHHHHcC---CCeEEEEecCCCCCchHHHHHHHHHHHHHh
Confidence 445555665543 334444544332 13344555544443
No 240
>3l4b_C TRKA K+ channel protien TM1088B; potassium channel, ring-gating complex, structural GEN PSI-2-2, protein structure initiative; HET: AMP; 3.45A {Thermotoga maritima}
Probab=53.18 E-value=44 Score=25.60 Aligned_cols=54 Identities=9% Similarity=0.049 Sum_probs=27.9
Q ss_pred cccEEEEcCCCCCCCHHHHHHHHhccCCCCCCcEEEEeCCCcHHHHHHHHHcCCceEEe
Q 026776 84 KVDLIITDYCMPGMTGYELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIV 142 (233)
Q Consensus 84 ~~DlvllD~~mp~~~g~~ll~~Lr~~~~~~~~piIvlt~~~~~~~~~~al~~Ga~dyL~ 142 (233)
..|+|++-..-. .....++...+...+ ...+|+.+... ........+|++.++.
T Consensus 65 ~ad~vi~~~~~d-~~n~~~~~~a~~~~~--~~~iia~~~~~--~~~~~l~~~G~d~vi~ 118 (218)
T 3l4b_C 65 KNDVVVILTPRD-EVNLFIAQLVMKDFG--VKRVVSLVNDP--GNMEIFKKMGITTVLN 118 (218)
T ss_dssp TTCEEEECCSCH-HHHHHHHHHHHHTSC--CCEEEECCCSG--GGHHHHHHHTCEECCC
T ss_pred cCCEEEEecCCc-HHHHHHHHHHHHHcC--CCeEEEEEeCc--chHHHHHHCCCCEEEC
Confidence 578888754221 122334444454333 55566554443 3344456788876554
No 241
>1rzu_A Glycogen synthase 1; glycosyl-transferase, GT-B fold, rossmann fold, ADP-binding, transferase; HET: ADP; 2.30A {Agrobacterium tumefaciens} SCOP: c.87.1.8 PDB: 1rzv_A
Probab=53.01 E-value=1.1e+02 Score=26.16 Aligned_cols=64 Identities=19% Similarity=0.154 Sum_probs=41.9
Q ss_pred ccEEEEcCCCCCCCHHHHHHHHhccCCCCCCcEEEEeCCCcHHHHHHHHHcC---------CceEEeCCCCHHHHHHHHH
Q 026776 85 VDLIITDYCMPGMTGYELLKKIKDSSALREIPVVIMSSENILARIDRCLEDG---------AEDFIVKPVKLSDVKRIKD 155 (233)
Q Consensus 85 ~DlvllD~~mp~~~g~~ll~~Lr~~~~~~~~piIvlt~~~~~~~~~~al~~G---------a~dyL~KP~~~~eL~~~~~ 155 (233)
.|++++=.. .+.-|..+++.+.. .+|+|+. .. ....+.+..| ..+++..|.+.++|.+.+.
T Consensus 366 adv~v~pS~-~E~~~~~~lEAma~-----G~PvI~s-~~---gg~~e~v~~~~~~~~~~~~~~G~l~~~~d~~~la~~i~ 435 (485)
T 1rzu_A 366 CDAIIIPSR-FEPCGLTQLYALRY-----GCIPVVA-RT---GGLADTVIDANHAALASKAATGVQFSPVTLDGLKQAIR 435 (485)
T ss_dssp CSEEEECCS-CCSSCSHHHHHHHH-----TCEEEEE-SS---HHHHHHCCBCCHHHHHTTCCCBEEESSCSHHHHHHHHH
T ss_pred CCEEEECcc-cCCCCHHHHHHHHC-----CCCEEEe-CC---CChhheecccccccccccCCcceEeCCCCHHHHHHHHH
Confidence 577776433 23445667777654 6788764 32 2334556666 7899999999999977666
Q ss_pred HHh
Q 026776 156 YLT 158 (233)
Q Consensus 156 ~l~ 158 (233)
.+.
T Consensus 436 ~ll 438 (485)
T 1rzu_A 436 RTV 438 (485)
T ss_dssp HHH
T ss_pred HHH
Confidence 654
No 242
>2xw6_A MGS, methylglyoxal synthase; lyase; 1.08A {Thermus SP} PDB: 2x8w_A 1wo8_A
Probab=52.81 E-value=37 Score=24.63 Aligned_cols=37 Identities=11% Similarity=0.021 Sum_probs=20.5
Q ss_pred EEEEeCCHHHHHHHHHHHhhc--CCEEEEECCHHHHHHH
Q 026776 32 VLAVDDSFVDRKVIERLLTIS--SCKVTAVDSGRRALQF 68 (233)
Q Consensus 32 ILIVddd~~~~~~l~~~L~~~--g~~v~~a~~~~~al~~ 68 (233)
+.+-|.+......+.+.+... ||.+..-..-...++.
T Consensus 8 lsv~D~dK~~~v~~a~~~~~ll~Gf~l~AT~gTa~~L~e 46 (134)
T 2xw6_A 8 LIAHDAKKEEMVAFCQRHREVLARFPLVATGTTGRRIEE 46 (134)
T ss_dssp EEECGGGHHHHHHHHHHTHHHHTTSCEEECHHHHHHHHH
T ss_pred EEEecccHHHHHHHHHHHHHHhCCCEEEEccHHHHHHHH
Confidence 333455555555556666677 8877654444444443
No 243
>2iuy_A Avigt4, glycosyltransferase; antibiotics, family GT-4, avilamycin A; HET: MES; 2.1A {Streptomyces viridochromogenes} PDB: 2iv3_A*
Probab=52.62 E-value=26 Score=28.58 Aligned_cols=34 Identities=12% Similarity=-0.094 Sum_probs=23.3
Q ss_pred CCcEEEEEeCC--------------------HHHHHHHHHHHhhcCCEEEEECC
Q 026776 28 EEVHVLAVDDS--------------------FVDRKVIERLLTISSCKVTAVDS 61 (233)
Q Consensus 28 ~~~~ILIVddd--------------------~~~~~~l~~~L~~~g~~v~~a~~ 61 (233)
++||||++... ......+.+.|.+.|++|..+..
T Consensus 2 ~~mkIl~v~~~~~~~~~~~~~p~~p~~~gG~~~~~~~l~~~L~~~G~~v~v~~~ 55 (342)
T 2iuy_A 2 RPLKVALVNIPLRVPGSDAWISVPPQGYGGIQWVVANLMDGLLELGHEVFLLGA 55 (342)
T ss_dssp -CCEEEEECCCCBCTTSSSBCCSSCSSSCHHHHHHHHHHHHHHHTTCEEEEESC
T ss_pred CccEEEEEeccccccCcccccccCcccCChHHHHHHHHHHHHHHcCCeEEEEec
Confidence 35889998876 22444566677778999987654
No 244
>4avf_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase; 2.23A {Pseudomonas aeruginosa}
Probab=52.58 E-value=1.2e+02 Score=26.72 Aligned_cols=45 Identities=7% Similarity=0.138 Sum_probs=32.5
Q ss_pred HHHHHHHHhccCCCCCCcEEEEeCCCcHHHHHHHHHcCCceEEeC
Q 026776 99 GYELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVK 143 (233)
Q Consensus 99 g~~ll~~Lr~~~~~~~~piIvlt~~~~~~~~~~al~~Ga~dyL~K 143 (233)
.++++.++.+......+|||.-.+-.+...+.+++.+||+.+..=
T Consensus 317 ~~~~l~~v~~~~~~~~iPVIa~GGI~~~~di~kal~~GAd~V~vG 361 (490)
T 4avf_A 317 QISAIANVAAALEGTGVPLIADGGIRFSGDLAKAMVAGAYCVMMG 361 (490)
T ss_dssp HHHHHHHHHHHHTTTTCCEEEESCCCSHHHHHHHHHHTCSEEEEC
T ss_pred HHHHHHHHHHHhccCCCcEEEeCCCCCHHHHHHHHHcCCCeeeec
Confidence 455566665422122689998877778899999999999988653
No 245
>3e18_A Oxidoreductase; dehydrogenase, NAD-binding, structural genom protein structure initiative, PSI, NEW YORK structural GENO research consortium; HET: NAD; 1.95A {Listeria innocua}
Probab=52.56 E-value=50 Score=27.63 Aligned_cols=106 Identities=20% Similarity=0.176 Sum_probs=58.4
Q ss_pred CCCcEEEEEeCCHHHHHHHHHHHhhc-CCEEEEE-CCHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCCCCCHHHHHH
Q 026776 27 TEEVHVLAVDDSFVDRKVIERLLTIS-SCKVTAV-DSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLK 104 (233)
Q Consensus 27 ~~~~~ILIVddd~~~~~~l~~~L~~~-g~~v~~a-~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp~~~g~~ll~ 104 (233)
+++++|.||.--..-...+. .|... ++++..+ +...+..+... .+.+-.. .+--+++.
T Consensus 3 m~~~~vgiiG~G~~g~~~~~-~l~~~~~~~l~av~d~~~~~~~~a~-------------~~g~~~~------~~~~~ll~ 62 (359)
T 3e18_A 3 LKKYQLVIVGYGGMGSYHVT-LASAADNLEVHGVFDILAEKREAAA-------------QKGLKIY------ESYEAVLA 62 (359)
T ss_dssp CCCEEEEEECCSHHHHHHHH-HHHTSTTEEEEEEECSSHHHHHHHH-------------TTTCCBC------SCHHHHHH
T ss_pred CCcCcEEEECcCHHHHHHHH-HHHhCCCcEEEEEEcCCHHHHHHHH-------------hcCCcee------CCHHHHhc
Confidence 35799999998765554444 44444 6777654 32223323221 1121100 12222222
Q ss_pred HHhccCCCCCCcEEEEeCCC--cHHHHHHHHHcCCceEEeCCCC--HHHHHHHHHHHhh
Q 026776 105 KIKDSSALREIPVVIMSSEN--ILARIDRCLEDGAEDFIVKPVK--LSDVKRIKDYLTR 159 (233)
Q Consensus 105 ~Lr~~~~~~~~piIvlt~~~--~~~~~~~al~~Ga~dyL~KP~~--~~eL~~~~~~l~~ 159 (233)
. . .+-+|+++... ..+.+..|+++|..=|+.||+. .++..++++...+
T Consensus 63 ---~--~--~~D~V~i~tp~~~h~~~~~~al~aGkhVl~EKP~a~~~~ea~~l~~~a~~ 114 (359)
T 3e18_A 63 ---D--E--KVDAVLIATPNDSHKELAISALEAGKHVVCEKPVTMTSEDLLAIMDVAKR 114 (359)
T ss_dssp ---C--T--TCCEEEECSCGGGHHHHHHHHHHTTCEEEEESSCCSSHHHHHHHHHHHHH
T ss_pred ---C--C--CCCEEEEcCCcHHHHHHHHHHHHCCCCEEeeCCCcCCHHHHHHHHHHHHH
Confidence 1 1 44455554433 3567788999999999999964 5566666665544
No 246
>3o9z_A Lipopolysaccaride biosynthesis protein WBPB; oxidoreductase, sugar biosynthesis, dehydrogenase; HET: NAD AKG; 1.45A {Thermus thermophilus} PDB: 3oa0_A*
Probab=52.42 E-value=38 Score=27.89 Aligned_cols=47 Identities=23% Similarity=0.357 Sum_probs=33.7
Q ss_pred CCcEEEEeCCC--cHHHHHHHHHcCCceEEeCCCC--HHHHHHHHHHHhhh
Q 026776 114 EIPVVIMSSEN--ILARIDRCLEDGAEDFIVKPVK--LSDVKRIKDYLTRD 160 (233)
Q Consensus 114 ~~piIvlt~~~--~~~~~~~al~~Ga~dyL~KP~~--~~eL~~~~~~l~~~ 160 (233)
.+-+|+++... ..+.+..|+++|..=|+.||+. .++..++++...+.
T Consensus 72 ~vD~V~I~tP~~~H~~~~~~al~aGkhVl~EKPla~~~~ea~~l~~~a~~~ 122 (312)
T 3o9z_A 72 GVDYLSIASPNHLHYPQIRMALRLGANALSEKPLVLWPEEIARLKELEART 122 (312)
T ss_dssp CCSEEEECSCGGGHHHHHHHHHHTTCEEEECSSSCSCHHHHHHHHHHHHHH
T ss_pred CCcEEEECCCchhhHHHHHHHHHCCCeEEEECCCCCCHHHHHHHHHHHHHc
Confidence 55566665443 4567889999999999999964 56777777666543
No 247
>4avf_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase; 2.23A {Pseudomonas aeruginosa}
Probab=52.16 E-value=32 Score=30.58 Aligned_cols=56 Identities=18% Similarity=0.170 Sum_probs=41.7
Q ss_pred cccEEEEcCCCCCC-CHHHHHHHHhccCCCCCCcEEEEeCCCcHHHHHHHHHcCCceEEe
Q 026776 84 KVDLIITDYCMPGM-TGYELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIV 142 (233)
Q Consensus 84 ~~DlvllD~~mp~~-~g~~ll~~Lr~~~~~~~~piIvlt~~~~~~~~~~al~~Ga~dyL~ 142 (233)
.+|+|.+|...+.. .-.++++++++..+ .+|+++- .-.+.+.+..+.++|+|.+..
T Consensus 241 G~d~I~id~a~g~~~~~~~~v~~i~~~~p--~~~Vi~g-~v~t~e~a~~l~~aGaD~I~v 297 (490)
T 4avf_A 241 GVDVVVVDTAHGHSKGVIERVRWVKQTFP--DVQVIGG-NIATAEAAKALAEAGADAVKV 297 (490)
T ss_dssp TCSEEEEECSCCSBHHHHHHHHHHHHHCT--TSEEEEE-EECSHHHHHHHHHTTCSEEEE
T ss_pred ccceEEecccCCcchhHHHHHHHHHHHCC--CceEEEe-eeCcHHHHHHHHHcCCCEEEE
Confidence 58999999877653 34688899988654 6677763 234567788899999998876
No 248
>3u81_A Catechol O-methyltransferase; neurotransmitter degradation, transferase transferase inhibitor complex; HET: SAH; 1.13A {Rattus norvegicus} SCOP: c.66.1.1 PDB: 3nwe_A* 3oe5_A* 3ozr_A* 3oe4_A* 3ozt_A* 3ozs_A* 3r6t_A* 3hvi_A* 1jr4_A* 1vid_A* 1h1d_A* 2cl5_A* 3hvh_A* 3hvj_A* 3hvk_A* 3nw9_A* 3nwb_A* 3s68_A* 2zlb_A 2zth_A* ...
Probab=52.15 E-value=58 Score=24.80 Aligned_cols=60 Identities=15% Similarity=0.188 Sum_probs=39.5
Q ss_pred CcEEEEEeCCHHHHHHHHHHHhhcCC--EEE-EECCHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCC
Q 026776 29 EVHVLAVDDSFVDRKVIERLLTISSC--KVT-AVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMP 95 (233)
Q Consensus 29 ~~~ILIVddd~~~~~~l~~~L~~~g~--~v~-~a~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp 95 (233)
..+|..||-++...+..++.++..|. .+. ...+..+.+..+... .....||+|++|....
T Consensus 83 ~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~l~~~~~~-------~~~~~fD~V~~d~~~~ 145 (221)
T 3u81_A 83 GARLLTMEINPDCAAITQQMLNFAGLQDKVTILNGASQDLIPQLKKK-------YDVDTLDMVFLDHWKD 145 (221)
T ss_dssp TCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHGGGTTTT-------SCCCCCSEEEECSCGG
T ss_pred CCEEEEEeCChHHHHHHHHHHHHcCCCCceEEEECCHHHHHHHHHHh-------cCCCceEEEEEcCCcc
Confidence 46899999999999999988877664 233 355665554433100 0114799999997543
No 249
>2qfm_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC; HET: SPD MTA; 1.80A {Homo sapiens} PDB: 3c6k_A* 3c6m_A*
Probab=51.99 E-value=82 Score=26.88 Aligned_cols=68 Identities=16% Similarity=0.174 Sum_probs=41.6
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhcC---C------EE-EEECCHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCC-CC--
Q 026776 30 VHVLAVDDSFVDRKVIERLLTISS---C------KV-TAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCM-PG-- 96 (233)
Q Consensus 30 ~~ILIVddd~~~~~~l~~~L~~~g---~------~v-~~a~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~m-p~-- 96 (233)
-+|.+||-|+...+..++.+...+ + .+ ....|+.+.++.... ....||+||+|..- |.
T Consensus 212 ~~Vt~VEID~~vie~Ar~~~~~l~~~~l~dp~~~rv~vi~~Da~~~L~~~~~---------~~~~fDvII~D~~d~P~~~ 282 (364)
T 2qfm_A 212 KMVTMVEIDQMVIDGCKKYMRKTCGDVLDNLKGDCYQVLIEDCIPVLKRYAK---------EGREFDYVINDLTAVPIST 282 (364)
T ss_dssp SEEEEEESCHHHHHHHHHHCCC----CCSSSEETTEEEEESCHHHHHHHHHH---------HTCCEEEEEEECCSSCCCC
T ss_pred CEEEEEECCHHHHHHHHHHHHHhccccccccCCCcEEEEECcHHHHHHhhhc---------cCCCceEEEECCCCcccCc
Confidence 568889989888888888875321 0 12 335677666654310 13469999999754 41
Q ss_pred ----CCHHHHHHHH
Q 026776 97 ----MTGYELLKKI 106 (233)
Q Consensus 97 ----~~g~~ll~~L 106 (233)
.-..++.+.+
T Consensus 283 ~p~~L~t~eFy~~~ 296 (364)
T 2qfm_A 283 SPEEDSTWEFLRLI 296 (364)
T ss_dssp C----CHHHHHHHH
T ss_pred CchhhhHHHHHHHH
Confidence 2345666665
No 250
>1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A*
Probab=51.92 E-value=1.3e+02 Score=26.65 Aligned_cols=41 Identities=10% Similarity=0.189 Sum_probs=31.6
Q ss_pred HHHHHHHHhccCCCCCCcEEEEeCCCcHHHHHHHHHcCCceEEe
Q 026776 99 GYELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIV 142 (233)
Q Consensus 99 g~~ll~~Lr~~~~~~~~piIvlt~~~~~~~~~~al~~Ga~dyL~ 142 (233)
.+..+..+++.. .+|||.-.+-.+...+.+++.+||+.+..
T Consensus 346 ~~~~~~~~~~~~---~ipVia~GGI~~~~di~kala~GAd~V~i 386 (514)
T 1jcn_A 346 AVYKVAEYARRF---GVPIIADGGIQTVGHVVKALALGASTVMM 386 (514)
T ss_dssp HHHHHHHHHGGG---TCCEEEESCCCSHHHHHHHHHTTCSEEEE
T ss_pred HHHHHHHHHhhC---CCCEEEECCCCCHHHHHHHHHcCCCeeeE
Confidence 456667776532 68999887777888999999999998743
No 251
>2qzs_A Glycogen synthase; glycosyl-transferase, GT-B fold, rossmann fold, closed-form, ADP and glucose binding, glycogen biosynthesis; HET: GLC ADP 250; 2.20A {Escherichia coli} PDB: 2r4t_A* 2r4u_A* 3guh_A* 3cx4_A* 3cop_A* 3d1j_A
Probab=51.88 E-value=1.1e+02 Score=26.04 Aligned_cols=64 Identities=14% Similarity=0.099 Sum_probs=41.2
Q ss_pred ccEEEEcCCCCCCCHHHHHHHHhccCCCCCCcEEEEeCCCcHHHHHHHHHcC---------CceEEeCCCCHHHHHHHHH
Q 026776 85 VDLIITDYCMPGMTGYELLKKIKDSSALREIPVVIMSSENILARIDRCLEDG---------AEDFIVKPVKLSDVKRIKD 155 (233)
Q Consensus 85 ~DlvllD~~mp~~~g~~ll~~Lr~~~~~~~~piIvlt~~~~~~~~~~al~~G---------a~dyL~KP~~~~eL~~~~~ 155 (233)
.|++++=.. .+.-|..+++.+.. .+|+|+. .. ....+.+..| ..+++..|.+.++|.+.+.
T Consensus 367 adv~v~pS~-~E~~g~~~lEAma~-----G~PvI~s-~~---gg~~e~v~~~~~~~~~~~~~~G~l~~~~d~~~la~~i~ 436 (485)
T 2qzs_A 367 ADVILVPSR-FEPCGLTQLYGLKY-----GTLPLVR-RT---GGLADTVSDCSLENLADGVASGFVFEDSNAWSLLRAIR 436 (485)
T ss_dssp CSEEEECCS-CCSSCSHHHHHHHH-----TCEEEEE-SS---HHHHHHCCBCCHHHHHTTCCCBEEECSSSHHHHHHHHH
T ss_pred CCEEEECCc-cCCCcHHHHHHHHC-----CCCEEEC-CC---CCccceeccCccccccccccceEEECCCCHHHHHHHHH
Confidence 466665432 23445666666653 6777754 22 2334556666 7899999999999987766
Q ss_pred HHh
Q 026776 156 YLT 158 (233)
Q Consensus 156 ~l~ 158 (233)
.+.
T Consensus 437 ~ll 439 (485)
T 2qzs_A 437 RAF 439 (485)
T ss_dssp HHH
T ss_pred HHH
Confidence 654
No 252
>1qop_A Tryptophan synthase alpha chain; lyase, carbon-oxygen lyase, tryptophan biosynthesis, pyridoxal phosphate; HET: IPL PLP; 1.4A {Salmonella typhimurium} SCOP: c.1.2.4 PDB: 1k8x_A* 1wbj_A* 2clk_A* 2j9z_A* 3cep_A* 1k8y_A* 1a5s_A* 1a50_A* 1c29_A* 1c8v_A* 1c9d_A* 1bks_A* 1cx9_A* 1fuy_A* 1cw2_A* 1k7e_A* 1k7f_A* 1k7x_A* 1k3u_A* 1k8z_A* ...
Probab=51.19 E-value=47 Score=26.74 Aligned_cols=42 Identities=17% Similarity=0.216 Sum_probs=32.3
Q ss_pred HHHHHHHhccCCCCCCcEEEEeCCCcHHHHHHHHHcCCceEEeCC
Q 026776 100 YELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKP 144 (233)
Q Consensus 100 ~~ll~~Lr~~~~~~~~piIvlt~~~~~~~~~~al~~Ga~dyL~KP 144 (233)
.+.++++|+.. .+||++=.+-.+.+.+.+++..|||.++.=.
T Consensus 194 ~~~i~~lr~~~---~~pi~vggGI~t~e~~~~~~~agAD~vVVGS 235 (268)
T 1qop_A 194 HHLIEKLKEYH---AAPALQGFGISSPEQVSAAVRAGAAGAISGS 235 (268)
T ss_dssp HHHHHHHHHTT---CCCEEEESSCCSHHHHHHHHHTTCSEEEECH
T ss_pred HHHHHHHHhcc---CCcEEEECCCCCHHHHHHHHHcCCCEEEECh
Confidence 68889998753 6787765555567888888999999998753
No 253
>3vk5_A MOEO5; TIM barrel, transferase; HET: FPQ; 1.39A {Streptomyces ghanaensis} PDB: 3vka_A* 3vkb_A* 3vkc_A* 3vkd_A*
Probab=50.92 E-value=42 Score=27.68 Aligned_cols=58 Identities=7% Similarity=0.065 Sum_probs=45.1
Q ss_pred ccEEEEcCCCCCCCHHHHHHHHhccCCCCCCcEEEEeCCCcHHHHHHHHHcCCceEEeCC
Q 026776 85 VDLIITDYCMPGMTGYELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKP 144 (233)
Q Consensus 85 ~DlvllD~~mp~~~g~~ll~~Lr~~~~~~~~piIvlt~~~~~~~~~~al~~Ga~dyL~KP 144 (233)
.++|.+|..- .....++++++++.-. ..+|+++--+-.+.+.+.+++++|||.++.--
T Consensus 200 ~~lV~LD~~~-~~v~~e~V~~I~~~~~-~~iPV~vGGGIrs~Eda~~ll~aGAD~VVVGS 257 (286)
T 3vk5_A 200 FHMVYLYSRN-EHVPPEVVRHFRKGLG-PDQVLFVSGNVRSGRQVTEYLDSGADYVGFAG 257 (286)
T ss_dssp CSEEEEECSS-SCCCHHHHHHHHHHSC-TTCEEEEESSCCSHHHHHHHHHTTCSEEEESG
T ss_pred CCEEEEcCCC-CcCCHHHHHHHHHhcC-CCCCEEEEeCCCCHHHHHHHHHcCCCEEEECc
Confidence 4899999765 4445689999987531 15788877777788999999999999998765
No 254
>3td9_A Branched chain amino acid ABC transporter, peripl amino acid-binding protein; leucine binding, structural genomics; HET: MSE PHE; 1.90A {Thermotoga maritima}
Probab=50.67 E-value=74 Score=25.97 Aligned_cols=76 Identities=11% Similarity=-0.057 Sum_probs=45.0
Q ss_pred cEEEEE-e-CCHHH---HHHHHHHHhhcCCEEEEE------CCHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCCCCC
Q 026776 30 VHVLAV-D-DSFVD---RKVIERLLTISSCKVTAV------DSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMT 98 (233)
Q Consensus 30 ~~ILIV-d-dd~~~---~~~l~~~L~~~g~~v~~a------~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp~~~ 98 (233)
-+|.+| + ++... .+.+.+.++..|..+... .+....+..+ ....+|+|++.. .+.+
T Consensus 150 ~~iaii~~~~~~~~~~~~~~~~~~~~~~G~~v~~~~~~~~~~d~~~~~~~l-----------~~~~~d~v~~~~--~~~~ 216 (366)
T 3td9_A 150 KRVVVFTDVEQDYSVGLSNFFINKFTELGGQVKRVFFRSGDQDFSAQLSVA-----------MSFNPDAIYITG--YYPE 216 (366)
T ss_dssp CEEEEEEETTCHHHHHHHHHHHHHHHHTTCEEEEEEECTTCCCCHHHHHHH-----------HHTCCSEEEECS--CHHH
T ss_pred cEEEEEEeCCCcHHHHHHHHHHHHHHHCCCEEEEEEeCCCCccHHHHHHHH-----------HhcCCCEEEEcc--chhH
Confidence 356666 3 44332 344566677778765432 2444555555 234689999843 2345
Q ss_pred HHHHHHHHhccCCCCCCcEEEE
Q 026776 99 GYELLKKIKDSSALREIPVVIM 120 (233)
Q Consensus 99 g~~ll~~Lr~~~~~~~~piIvl 120 (233)
...+++.+++... ..|++..
T Consensus 217 a~~~~~~~~~~g~--~~~~~~~ 236 (366)
T 3td9_A 217 IALISRQARQLGF--TGYILAG 236 (366)
T ss_dssp HHHHHHHHHHTTC--CSEEEEC
T ss_pred HHHHHHHHHHcCC--CceEEee
Confidence 6778888887765 6676544
No 255
>3ceu_A Thiamine phosphate pyrophosphorylase; TIM barrel-like protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacteroides thetaiotaomicron vpi-5482}
Probab=50.63 E-value=32 Score=26.58 Aligned_cols=56 Identities=11% Similarity=0.042 Sum_probs=38.1
Q ss_pred cccEEEEcCCCCC--------CCHHHHHHHHhccCCCCCCcEEEEeCCCcHHHHHHHHHcCCceEE
Q 026776 84 KVDLIITDYCMPG--------MTGYELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFI 141 (233)
Q Consensus 84 ~~DlvllD~~mp~--------~~g~~ll~~Lr~~~~~~~~piIvlt~~~~~~~~~~al~~Ga~dyL 141 (233)
..|.|+++--.|. .-|++.++++++... ..+|++.+.+-. .+.+.++++.|++++-
T Consensus 107 GaDyv~~g~vf~t~sk~~~~~~~g~~~l~~~~~~~~-~~iPviaiGGI~-~~nv~~~~~~Ga~gVa 170 (210)
T 3ceu_A 107 FYDYVFMSPIYDSISKVNYYSTYTAEELREAQKAKI-IDSKVMALGGIN-EDNLLEIKDFGFGGAV 170 (210)
T ss_dssp GSSEEEECCCC---------CCCCHHHHHHHHHTTC-SSTTEEEESSCC-TTTHHHHHHTTCSEEE
T ss_pred CCCEEEECCcCCCCCCCCCCCCCCHHHHHHHHHhcC-CCCCEEEECCCC-HHHHHHHHHhCCCEEE
Confidence 4788987754432 236788888876420 278998876554 5667788999999874
No 256
>4gnr_A ABC transporter substrate-binding protein-branche amino acid transport; amino acid-binding protein, surface-exposed protein; HET: MLY; 1.00A {Streptococcus pneumoniae}
Probab=50.51 E-value=81 Score=25.62 Aligned_cols=88 Identities=16% Similarity=0.066 Sum_probs=51.1
Q ss_pred cEEEEEeCCHHHHHHHHH-HHhhcCCEEEEE-------CCHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCCCCCHHH
Q 026776 30 VHVLAVDDSFVDRKVIER-LLTISSCKVTAV-------DSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYE 101 (233)
Q Consensus 30 ~~ILIVddd~~~~~~l~~-~L~~~g~~v~~a-------~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp~~~g~~ 101 (233)
..+++.+++......+.+ +.+..|.++... .+....+..+ ....+|+|++-. ...++..
T Consensus 145 ~~~~~~~~~~~yg~~~~~~~~~~~g~~vv~~~~~~~~~~d~~~~l~~i-----------~~~~~d~v~~~~--~~~~~~~ 211 (353)
T 4gnr_A 145 KVVLYTDNASDYAKGIAKSFRESYKGEIVADETFVAGDTDFQAALTKM-----------KGKDFDAIVVPG--YYNEAGK 211 (353)
T ss_dssp EEEEEEETTCHHHHHHHHHHHHHCCSEEEEEEEECTTCCCCHHHHHHH-----------HTSCCSEEECCS--CHHHHHH
T ss_pred EEEEEEcCchHHHHHHHHHHHHHcCCEEEEEEeeCCCCCCHHHHHHHH-----------HhcCCCEEEEec--CcHHHHH
Confidence 345556654444444444 445567655432 3555566666 456799998743 3446778
Q ss_pred HHHHHhccCCCCCCcEEEEeCCCcHHHHHHH
Q 026776 102 LLKKIKDSSALREIPVVIMSSENILARIDRC 132 (233)
Q Consensus 102 ll~~Lr~~~~~~~~piIvlt~~~~~~~~~~a 132 (233)
+++.+++... ..+++.............+
T Consensus 212 ~~~~~~~~g~--~~~~~~~~~~~~~~~~~~~ 240 (353)
T 4gnr_A 212 IVNQARGMGI--DKPIVGGDGFNGEEFVQQA 240 (353)
T ss_dssp HHHHHHHTTC--CSCEEECGGGCSHHHHHHH
T ss_pred HHHHHHHcCC--CCcEEEecccccchhhhhh
Confidence 8888888765 6676655554555444433
No 257
>4fo4_A Inosine 5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.03A {Vibrio cholerae o1 biovar el tor} PDB: 4ff0_A* 4hlv_A* 4fez_A
Probab=50.30 E-value=35 Score=29.21 Aligned_cols=57 Identities=11% Similarity=0.123 Sum_probs=38.9
Q ss_pred CcccEEEEcCCCCCC-CHHHHHHHHhccCCCCCCcEEEEeCCCcHHHHHHHHHcCCceEEe
Q 026776 83 LKVDLIITDYCMPGM-TGYELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIV 142 (233)
Q Consensus 83 ~~~DlvllD~~mp~~-~g~~ll~~Lr~~~~~~~~piIvlt~~~~~~~~~~al~~Ga~dyL~ 142 (233)
..+|+|.+|..-... .-++.++++++..+ .+++|+-+ -.+.+.+..+.++|+|.+..
T Consensus 119 aGvd~I~idta~G~~~~~~~~I~~ik~~~p--~v~Vi~G~-v~t~e~A~~a~~aGAD~I~v 176 (366)
T 4fo4_A 119 AGVDVLLIDSSHGHSEGVLQRIRETRAAYP--HLEIIGGN-VATAEGARALIEAGVSAVKV 176 (366)
T ss_dssp TTCSEEEEECSCTTSHHHHHHHHHHHHHCT--TCEEEEEE-ECSHHHHHHHHHHTCSEEEE
T ss_pred CCCCEEEEeCCCCCCHHHHHHHHHHHHhcC--CCceEeee-eCCHHHHHHHHHcCCCEEEE
Confidence 358999998643322 23567888887653 66766522 23567788899999998877
No 258
>3oa2_A WBPB; oxidoreductase, sugar biosynthesis, dehydrogenase; HET: NAD; 1.50A {Pseudomonas aeruginosa}
Probab=50.01 E-value=40 Score=27.84 Aligned_cols=47 Identities=17% Similarity=0.168 Sum_probs=33.5
Q ss_pred CCcEEEEeCCC--cHHHHHHHHHcCCceEEeCCC--CHHHHHHHHHHHhhh
Q 026776 114 EIPVVIMSSEN--ILARIDRCLEDGAEDFIVKPV--KLSDVKRIKDYLTRD 160 (233)
Q Consensus 114 ~~piIvlt~~~--~~~~~~~al~~Ga~dyL~KP~--~~~eL~~~~~~l~~~ 160 (233)
.+-+|+++... ..+.+..|+++|..=|+.||+ +.++..++++...+.
T Consensus 73 ~vD~V~I~tP~~~H~~~~~~al~aGkhVl~EKPla~~~~ea~~l~~~a~~~ 123 (318)
T 3oa2_A 73 ALDYVSICSPNYLHYPHIAAGLRLGCDVICEKPLVPTPEMLDQLAVIERET 123 (318)
T ss_dssp SCCEEEECSCGGGHHHHHHHHHHTTCEEEECSSCCSCHHHHHHHHHHHHHH
T ss_pred CCcEEEECCCcHHHHHHHHHHHHCCCeEEEECCCcCCHHHHHHHHHHHHHh
Confidence 55566555443 456788999999999999994 566777776665543
No 259
>3usb_A Inosine-5'-monophosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid, TIM barrel, CBS-domain; HET: MSE IMP; 2.38A {Bacillus anthracis} PDB: 3tsd_A* 3tsb_A*
Probab=49.97 E-value=36 Score=30.42 Aligned_cols=57 Identities=18% Similarity=0.227 Sum_probs=42.3
Q ss_pred CcccEEEEcCCCCCCCH-HHHHHHHhccCCCCCCcEEEEeCCCcHHHHHHHHHcCCceEEe
Q 026776 83 LKVDLIITDYCMPGMTG-YELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIV 142 (233)
Q Consensus 83 ~~~DlvllD~~mp~~~g-~~ll~~Lr~~~~~~~~piIvlt~~~~~~~~~~al~~Ga~dyL~ 142 (233)
..+|+|.+|...+...+ +++++++++..+ .+++++- .-.+.+.+..+.++|++.+..
T Consensus 267 aGvd~I~Id~a~g~~~~v~~~i~~i~~~~~--~~~vi~g-~v~t~e~a~~~~~aGad~i~v 324 (511)
T 3usb_A 267 ASVDAIVLDTAHGHSQGVIDKVKEVRAKYP--SLNIIAG-NVATAEATKALIEAGANVVKV 324 (511)
T ss_dssp TTCSEEEEECSCTTSHHHHHHHHHHHHHCT--TSEEEEE-EECSHHHHHHHHHHTCSEEEE
T ss_pred hccceEEecccccchhhhhhHHHHHHHhCC--CceEEee-eeccHHHHHHHHHhCCCEEEE
Confidence 35899999988765544 578999988654 6677753 334567788899999998875
No 260
>3bw2_A 2-nitropropane dioxygenase; TIM barrel, oxidoreductase; HET: FMN; 2.10A {Streptomyces ansochromogenes} PDB: 3bw4_A* 3bw3_A*
Probab=49.95 E-value=1.2e+02 Score=25.60 Aligned_cols=42 Identities=24% Similarity=0.310 Sum_probs=33.3
Q ss_pred CHHHHHHHHhccCCCCCCcEEEEeCCCcHHHHHHHHHcCCceEEe
Q 026776 98 TGYELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIV 142 (233)
Q Consensus 98 ~g~~ll~~Lr~~~~~~~~piIvlt~~~~~~~~~~al~~Ga~dyL~ 142 (233)
..+++++++++.. .+|||+..+-.+.+.+.+++..|++.+..
T Consensus 195 ~~~~~l~~i~~~~---~iPViaaGGI~~~~~~~~~l~~GAd~V~v 236 (369)
T 3bw2_A 195 GLLSLLAQVREAV---DIPVVAAGGIMRGGQIAAVLAAGADAAQL 236 (369)
T ss_dssp CHHHHHHHHHHHC---SSCEEEESSCCSHHHHHHHHHTTCSEEEE
T ss_pred cHHHHHHHHHHhc---CceEEEECCCCCHHHHHHHHHcCCCEEEE
Confidence 3488899988642 78888777766888899999999988764
No 261
>3tfw_A Putative O-methyltransferase; PSI-biology, nysgrc, structural genomics, NEW YORK structura genomics research consortium; 1.88A {Klebsiella pneumoniae subsp}
Probab=49.92 E-value=90 Score=24.35 Aligned_cols=68 Identities=21% Similarity=0.252 Sum_probs=45.0
Q ss_pred CcEEEEEeCCHHHHHHHHHHHhhcCCE--EE-EECCHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCCCCCHHHHHHH
Q 026776 29 EVHVLAVDDSFVDRKVIERLLTISSCK--VT-AVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKK 105 (233)
Q Consensus 29 ~~~ILIVddd~~~~~~l~~~L~~~g~~--v~-~a~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp~~~g~~ll~~ 105 (233)
..+|..||-++......++.+...|.. +. ...+..+.+..+. ....||+|++|...+ +-..+++.
T Consensus 88 ~~~v~~vD~s~~~~~~a~~~~~~~g~~~~v~~~~~d~~~~l~~~~----------~~~~fD~V~~d~~~~--~~~~~l~~ 155 (248)
T 3tfw_A 88 DGQLLTLEADAHHAQVARENLQLAGVDQRVTLREGPALQSLESLG----------ECPAFDLIFIDADKP--NNPHYLRW 155 (248)
T ss_dssp TCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHTCC----------SCCCCSEEEECSCGG--GHHHHHHH
T ss_pred CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHhcC----------CCCCeEEEEECCchH--HHHHHHHH
Confidence 468999999999999999888877642 33 3556665554331 123799999987432 33455665
Q ss_pred Hhc
Q 026776 106 IKD 108 (233)
Q Consensus 106 Lr~ 108 (233)
+..
T Consensus 156 ~~~ 158 (248)
T 3tfw_A 156 ALR 158 (248)
T ss_dssp HHH
T ss_pred HHH
Confidence 544
No 262
>2p9j_A Hypothetical protein AQ2171; secsg, riken, PSI, structural GENO protein structure initiative, southeast collaboratory for S genomics; 2.40A {Aquifex aeolicus}
Probab=49.91 E-value=67 Score=22.86 Aligned_cols=41 Identities=20% Similarity=0.202 Sum_probs=30.3
Q ss_pred HHHHHHHhccCCCCCCcEEEEeCCCcHHHHHHHHHcCCceEEeCC
Q 026776 100 YELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKP 144 (233)
Q Consensus 100 ~~ll~~Lr~~~~~~~~piIvlt~~~~~~~~~~al~~Ga~dyL~KP 144 (233)
.++++.|++. ..+++++|+.........+-..|...|+...
T Consensus 42 ~~~l~~l~~~----g~~~~i~T~~~~~~~~~~l~~~gl~~~~~~~ 82 (162)
T 2p9j_A 42 GIGIKLLQKM----GITLAVISGRDSAPLITRLKELGVEEIYTGS 82 (162)
T ss_dssp HHHHHHHHTT----TCEEEEEESCCCHHHHHHHHHTTCCEEEECC
T ss_pred HHHHHHHHHC----CCEEEEEeCCCcHHHHHHHHHcCCHhhccCC
Confidence 4788888864 5689999988766555555578998888653
No 263
>2f9f_A First mannosyl transferase (WBAZ-1); alpha-beta protein, structural genomics, PSI, protein struct initiative; 1.80A {Archaeoglobus fulgidus} SCOP: c.87.1.8
Probab=49.90 E-value=71 Score=23.19 Aligned_cols=65 Identities=8% Similarity=0.201 Sum_probs=43.2
Q ss_pred ccEEEEcCCCCCCCHHHHHHHHhccCCCCCCcEEEEeCCCcHHHHHHHHHcCCceEEeCCCCHHHHHHHHHHHhhh
Q 026776 85 VDLIITDYCMPGMTGYELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVKLSDVKRIKDYLTRD 160 (233)
Q Consensus 85 ~DlvllD~~mp~~~g~~ll~~Lr~~~~~~~~piIvlt~~~~~~~~~~al~~Ga~dyL~KP~~~~eL~~~~~~l~~~ 160 (233)
.|++++=.. .+.-|..+++.+.. .+|+|+.. . ....+.+..|..+++. +.+.+++.+.+..+...
T Consensus 98 adi~v~ps~-~e~~~~~~~Eama~-----G~PvI~~~-~---~~~~e~i~~~~~g~~~-~~d~~~l~~~i~~l~~~ 162 (177)
T 2f9f_A 98 CKGLLCTAK-DEDFGLTPIEAMAS-----GKPVIAVN-E---GGFKETVINEKTGYLV-NADVNEIIDAMKKVSKN 162 (177)
T ss_dssp CSEEEECCS-SCCSCHHHHHHHHT-----TCCEEEES-S---HHHHHHCCBTTTEEEE-CSCHHHHHHHHHHHHHC
T ss_pred CCEEEeCCC-cCCCChHHHHHHHc-----CCcEEEeC-C---CCHHHHhcCCCccEEe-CCCHHHHHHHHHHHHhC
Confidence 577776322 33446677777753 67777542 2 2344556668889999 99999998877777643
No 264
>3c3y_A Pfomt, O-methyltransferase; plant secondary metabolism; HET: SAH; 1.37A {Mesembryanthemum crystallinum}
Probab=49.76 E-value=61 Score=25.23 Aligned_cols=71 Identities=13% Similarity=0.031 Sum_probs=45.1
Q ss_pred CcEEEEEeCCHHHHHHHHHHHhhcCC--EEE-EECCHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCCCCCHHHHHHH
Q 026776 29 EVHVLAVDDSFVDRKVIERLLTISSC--KVT-AVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKK 105 (233)
Q Consensus 29 ~~~ILIVddd~~~~~~l~~~L~~~g~--~v~-~a~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp~~~g~~ll~~ 105 (233)
.-+|..+|-++...+..++.++..|+ .+. ...+..+.+..+...+ .....||+|++|.... +-.++++.
T Consensus 95 ~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~------~~~~~fD~I~~d~~~~--~~~~~l~~ 166 (237)
T 3c3y_A 95 DGKITAIDFDREAYEIGLPFIRKAGVEHKINFIESDAMLALDNLLQGQ------ESEGSYDFGFVDADKP--NYIKYHER 166 (237)
T ss_dssp TCEEEEEESCHHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHST------TCTTCEEEEEECSCGG--GHHHHHHH
T ss_pred CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcc------CCCCCcCEEEECCchH--HHHHHHHH
Confidence 46899999999999999999887775 243 3566666655441100 0024699999996432 33445555
Q ss_pred Hh
Q 026776 106 IK 107 (233)
Q Consensus 106 Lr 107 (233)
+.
T Consensus 167 ~~ 168 (237)
T 3c3y_A 167 LM 168 (237)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 265
>3kts_A Glycerol uptake operon antiterminator regulatory; structural genomics, PSI-2, protein structur initiative; HET: UNL; 2.75A {Listeria monocytogenes str}
Probab=49.71 E-value=18 Score=28.03 Aligned_cols=54 Identities=20% Similarity=0.346 Sum_probs=41.3
Q ss_pred CCcccEEEEcCCCCCCCHHHHHHHHhccCCCCCCcEEEEeCCCcHHHHHHHHHcCCceEEe
Q 026776 82 GLKVDLIITDYCMPGMTGYELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIV 142 (233)
Q Consensus 82 ~~~~DlvllD~~mp~~~g~~ll~~Lr~~~~~~~~piIvlt~~~~~~~~~~al~~Ga~dyL~ 142 (233)
...||+|= -||+.-- ++++++++.- .+|+|+=.-=.+.+++.+|+++||+..-+
T Consensus 125 ~~~PD~iE---iLPGi~p-~iI~~i~~~~---~~PiIaGGlI~~~edv~~al~aGA~aVsT 178 (192)
T 3kts_A 125 KVQPDCIE---LLPGIIP-EQVQKMTQKL---HIPVIAGGLIETSEQVNQVIASGAIAVTT 178 (192)
T ss_dssp HHCCSEEE---EECTTCH-HHHHHHHHHH---CCCEEEESSCCSHHHHHHHHTTTEEEEEE
T ss_pred hcCCCEEE---ECCchhH-HHHHHHHHhc---CCCEEEECCcCCHHHHHHHHHcCCeEEEe
Confidence 44688772 2576554 7889998753 78988776667899999999999998765
No 266
>1qpo_A Quinolinate acid phosphoribosyl transferase; type II prtase, de novo NAD biosynthesis, PRPP, phosphoribos transferase; 2.40A {Mycobacterium tuberculosis H37RV} SCOP: c.1.17.1 d.41.2.1 PDB: 1qpn_A 1qpq_A* 1qpr_A*
Probab=49.46 E-value=48 Score=27.23 Aligned_cols=56 Identities=11% Similarity=0.266 Sum_probs=43.3
Q ss_pred HHHHHHHhccCCCCCCcEEEEeCCCcHHHHHHHHHcCCceEEeCCCCHHHHHHHHHHHhh
Q 026776 100 YELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVKLSDVKRIKDYLTR 159 (233)
Q Consensus 100 ~~ll~~Lr~~~~~~~~piIvlt~~~~~~~~~~al~~Ga~dyL~KP~~~~eL~~~~~~l~~ 159 (233)
.+.++..|+..+ ..+|.+-.. +.+++.+++++|+|-++.-.++++++.++++.+..
T Consensus 182 ~~av~~ar~~~~--~~~I~Vev~--t~eea~eal~aGaD~I~LDn~~~~~~~~~v~~l~~ 237 (284)
T 1qpo_A 182 VDALRAVRNAAP--DLPCEVEVD--SLEQLDAVLPEKPELILLDNFAVWQTQTAVQRRDS 237 (284)
T ss_dssp HHHHHHHHHHCT--TSCEEEEES--SHHHHHHHGGGCCSEEEEETCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCC--CCCEEEEeC--CHHHHHHHHHcCCCEEEECCCCHHHHHHHHHHhhc
Confidence 457777777655 347776654 35888899999999998999999999888877654
No 267
>3uuw_A Putative oxidoreductase with NAD(P)-binding rossm domain; structural genomics, center for structural genomics of infec diseases, csgid; HET: 1PE PGE; 1.63A {Clostridium difficile}
Probab=49.45 E-value=67 Score=26.01 Aligned_cols=106 Identities=13% Similarity=0.132 Sum_probs=57.1
Q ss_pred CCCcEEEEEeCCHHHHHHHHHHHhh-cCCEEEE-ECCHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCCCCCHHHHHH
Q 026776 27 TEEVHVLAVDDSFVDRKVIERLLTI-SSCKVTA-VDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLK 104 (233)
Q Consensus 27 ~~~~~ILIVddd~~~~~~l~~~L~~-~g~~v~~-a~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp~~~g~~ll~ 104 (233)
+++++|.||.--..-...+...|.. .++++.. ++...+..+.+.. .+.+-. -.+--+++.
T Consensus 4 M~~~~igiIG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~~~a~------------~~~~~~------~~~~~~ll~ 65 (308)
T 3uuw_A 4 MKNIKMGMIGLGSIAQKAYLPILTKSERFEFVGAFTPNKVKREKICS------------DYRIMP------FDSIESLAK 65 (308)
T ss_dssp -CCCEEEEECCSHHHHHHTHHHHTSCSSSEEEEEECSCHHHHHHHHH------------HHTCCB------CSCHHHHHT
T ss_pred cccCcEEEEecCHHHHHHHHHHHHhCCCeEEEEEECCCHHHHHHHHH------------HcCCCC------cCCHHHHHh
Confidence 3568999999876655534444544 4677764 4432332332211 111100 012222332
Q ss_pred HHhccCCCCCCcEEEEeC--CCcHHHHHHHHHcCCceEEeCCC--CHHHHHHHHHHHhh
Q 026776 105 KIKDSSALREIPVVIMSS--ENILARIDRCLEDGAEDFIVKPV--KLSDVKRIKDYLTR 159 (233)
Q Consensus 105 ~Lr~~~~~~~~piIvlt~--~~~~~~~~~al~~Ga~dyL~KP~--~~~eL~~~~~~l~~ 159 (233)
.+-+|+++. ....+.+..++++|..=++.||+ +.++..++.+...+
T Consensus 66 ---------~~D~V~i~tp~~~h~~~~~~al~~gk~vl~EKP~~~~~~~~~~l~~~a~~ 115 (308)
T 3uuw_A 66 ---------KCDCIFLHSSTETHYEIIKILLNLGVHVYVDKPLASTVSQGEELIELSTK 115 (308)
T ss_dssp ---------TCSEEEECCCGGGHHHHHHHHHHTTCEEEECSSSSSSHHHHHHHHHHHHH
T ss_pred ---------cCCEEEEeCCcHhHHHHHHHHHHCCCcEEEcCCCCCCHHHHHHHHHHHHH
Confidence 222333333 23456778899999999999997 45666666665544
No 268
>1thf_D HISF protein; thermophIle, TIM-barrel, histidine biosynthesis, lyase, phosphate-binding sites; 1.45A {Thermotoga maritima} SCOP: c.1.2.1 PDB: 2wjz_A 2a0n_A* 1gpw_A 1vh7_A 2rkx_A 3iio_A 3iip_A* 3iiv_A
Probab=49.41 E-value=47 Score=26.07 Aligned_cols=40 Identities=10% Similarity=0.308 Sum_probs=33.0
Q ss_pred HHHHHHHhccCCCCCCcEEEEeCCCcHHHHHHHHHcCCceEEe
Q 026776 100 YELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIV 142 (233)
Q Consensus 100 ~~ll~~Lr~~~~~~~~piIvlt~~~~~~~~~~al~~Ga~dyL~ 142 (233)
+++++++++.. .+|+|+-.+-...+.+.++++.|+++++.
T Consensus 184 ~~~~~~l~~~~---~ipvia~GGI~~~~d~~~~~~~Gadgv~v 223 (253)
T 1thf_D 184 TEMIRFVRPLT---TLPIIASGGAGKMEHFLEAFLAGADAALA 223 (253)
T ss_dssp HHHHHHHGGGC---CSCEEEESCCCSHHHHHHHHHTTCSEEEE
T ss_pred HHHHHHHHHhc---CCCEEEECCCCCHHHHHHHHHcCChHHHH
Confidence 78999998642 78999887777778888899999998865
No 269
>1qap_A Quinolinic acid phosphoribosyltransferase; glycosyltransferase, NAD biosynthesis; HET: NTM; 2.80A {Salmonella typhimurium} SCOP: c.1.17.1 d.41.2.1
Probab=49.32 E-value=1.1e+02 Score=25.20 Aligned_cols=91 Identities=12% Similarity=0.167 Sum_probs=53.4
Q ss_pred EEEEeCCHHH----HHHHHHHHhhcCC--EEEEECCHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCCCCCHHHHHHH
Q 026776 32 VLAVDDSFVD----RKVIERLLTISSC--KVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKK 105 (233)
Q Consensus 32 ILIVddd~~~----~~~l~~~L~~~g~--~v~~a~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp~~~g~~ll~~ 105 (233)
++|.|++-.. .+.++.+-+..+. -...+++.+++.+.+. ...|.|.+|- ++- +.++.
T Consensus 182 vlikdnhi~~~Gti~~ai~~~r~~~~~~kI~vev~tlee~~eA~~------------aGaD~I~ld~----~~~-e~l~~ 244 (296)
T 1qap_A 182 FLIKENHIIASGSVRQAVEKAFWLHPDVPVEVEVENLDELDDALK------------AGADIIMLDN----FNT-DQMRE 244 (296)
T ss_dssp EEECHHHHHHHSSHHHHHHHHHHHSTTSCEEEEESSHHHHHHHHH------------TTCSEEEESS----CCH-HHHHH
T ss_pred EEEEcCCeeccCCHHHHHHHHHHhCCCCcEEEEeCCHHHHHHHHH------------cCCCEEEECC----CCH-HHHHH
Confidence 5666555443 3444444443443 4456788888777652 2489999985 333 33344
Q ss_pred HhccCCCCCCcEEEEeCCCcHHHHHHHHHcCCceEE
Q 026776 106 IKDSSALREIPVVIMSSENILARIDRCLEDGAEDFI 141 (233)
Q Consensus 106 Lr~~~~~~~~piIvlt~~~~~~~~~~al~~Ga~dyL 141 (233)
+.+.-. .+++| ..++.-+.+.+.+..+.|+|.+-
T Consensus 245 ~v~~~~-~~~~I-~ASGGIt~~~i~~~a~~GvD~is 278 (296)
T 1qap_A 245 AVKRVN-GQARL-EVSGNVTAETLREFAETGVDFIS 278 (296)
T ss_dssp HHHTTC-TTCCE-EECCCSCHHHHHHHHHTTCSEEE
T ss_pred HHHHhC-CCCeE-EEECCCCHHHHHHHHHcCCCEEE
Confidence 433221 14444 45566678888889999996553
No 270
>1sui_A Caffeoyl-COA O-methyltransferase; rossmann fold, protein-cofactor-substrate complex; HET: SAH FRE; 2.70A {Medicago sativa} SCOP: c.66.1.1 PDB: 1sus_A*
Probab=49.19 E-value=94 Score=24.36 Aligned_cols=72 Identities=17% Similarity=0.125 Sum_probs=45.4
Q ss_pred CcEEEEEeCCHHHHHHHHHHHhhcCC--EEE-EECCHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCCCCCHHHHHHH
Q 026776 29 EVHVLAVDDSFVDRKVIERLLTISSC--KVT-AVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKK 105 (233)
Q Consensus 29 ~~~ILIVddd~~~~~~l~~~L~~~g~--~v~-~a~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp~~~g~~ll~~ 105 (233)
..+|..||-++......++.++..|+ .+. ...+..+.+..+...+. ....||+|++|.... +-..+++.
T Consensus 104 ~~~v~~iD~s~~~~~~a~~~~~~~g~~~~i~~~~gda~~~l~~l~~~~~------~~~~fD~V~~d~~~~--~~~~~l~~ 175 (247)
T 1sui_A 104 DGKILAMDINKENYELGLPVIKKAGVDHKIDFREGPALPVLDEMIKDEK------NHGSYDFIFVDADKD--NYLNYHKR 175 (247)
T ss_dssp TCEEEEEESCCHHHHHHHHHHHHTTCGGGEEEEESCHHHHHHHHHHSGG------GTTCBSEEEECSCST--THHHHHHH
T ss_pred CCEEEEEECCHHHHHHHHHHHHHcCCCCCeEEEECCHHHHHHHHHhccC------CCCCEEEEEEcCchH--HHHHHHHH
Confidence 35899999999988888888887765 343 35666666554311000 024699999996532 34455555
Q ss_pred Hhc
Q 026776 106 IKD 108 (233)
Q Consensus 106 Lr~ 108 (233)
+..
T Consensus 176 ~~~ 178 (247)
T 1sui_A 176 LID 178 (247)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
No 271
>3snr_A Extracellular ligand-binding receptor; structural genomics, APC102214, PSI-biology, midwest center structural genomics, MCSG; HET: MSE TYR PHE; 1.49A {Rhodopseudomonas palustris} PDB: 3uk0_A* 3t23_A* 3ukj_A* 4eyo_A* 4eyq_A* 3tx6_A* 4f8j_A* 4fb4_A*
Probab=49.18 E-value=36 Score=27.63 Aligned_cols=84 Identities=10% Similarity=-0.052 Sum_probs=48.1
Q ss_pred EEEEE-eCCHH---HHHHHHHHHhhcCCEEEE---E----CCHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCCCCCH
Q 026776 31 HVLAV-DDSFV---DRKVIERLLTISSCKVTA---V----DSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTG 99 (233)
Q Consensus 31 ~ILIV-ddd~~---~~~~l~~~L~~~g~~v~~---a----~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp~~~g 99 (233)
+|.+| +++.. ..+.+++.|++.|..+.. + .+....+..+ ....+|+|++.. .+...
T Consensus 137 ~ia~i~~~~~~~~~~~~~~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~l-----------~~~~~dav~~~~--~~~~a 203 (362)
T 3snr_A 137 TVGYIGYSDSYGDLWFNDLKKQGEAMGLKIVGEERFARPDTSVAGQALKL-----------VAANPDAILVGA--SGTAA 203 (362)
T ss_dssp EEEEEEESSHHHHHHHHHHHHHHHHTTCEEEEEEEECTTCSCCHHHHHHH-----------HHHCCSEEEEEC--CHHHH
T ss_pred EEEEEecCchHHHHHHHHHHHHHHHcCCEEEEEeecCCCCCCHHHHHHHH-----------HhcCCCEEEEec--CcchH
Confidence 44444 34433 334456667777876532 2 2344455544 234689998853 24456
Q ss_pred HHHHHHHhccCCCCCCcEEEEeCCCcHHHH
Q 026776 100 YELLKKIKDSSALREIPVVIMSSENILARI 129 (233)
Q Consensus 100 ~~ll~~Lr~~~~~~~~piIvlt~~~~~~~~ 129 (233)
..+++.+++... .+|++......+....
T Consensus 204 ~~~~~~~~~~g~--~~p~i~~~g~~~~~~~ 231 (362)
T 3snr_A 204 ALPQTTLRERGY--NGLIYQTHGAASMDFI 231 (362)
T ss_dssp HHHHHHHHHTTC--CSEEEECGGGCSHHHH
T ss_pred HHHHHHHHHcCC--CccEEeccCcCcHHHH
Confidence 778888888765 6787655555554433
No 272
>1t0b_A THUA-like protein; trehalose metabolism, NCS symmetry, structural genomics, PSI, protein structure initiative; 1.70A {Geobacillus stearothermophilus} SCOP: c.23.16.6
Probab=49.16 E-value=42 Score=26.96 Aligned_cols=33 Identities=12% Similarity=0.174 Sum_probs=23.5
Q ss_pred CCcEEEEEeCCHHHH--------------HHHHHHHhhcCCEEEEEC
Q 026776 28 EEVHVLAVDDSFVDR--------------KVIERLLTISSCKVTAVD 60 (233)
Q Consensus 28 ~~~~ILIVddd~~~~--------------~~l~~~L~~~g~~v~~a~ 60 (233)
.++||||..+..-.. ..+.++|+..||+|....
T Consensus 6 ~~~~vlv~~~~~h~~~~~~v~~~~p~g~~~~i~~~L~~~gf~V~~~t 52 (252)
T 1t0b_A 6 TPIRVVVWNEFRHEKKDEQVRAIYPEGMHTVIASYLAEAGFDAATAV 52 (252)
T ss_dssp CCCEEEEEECCCHHHHCHHHHHHCTTCHHHHHHHHHHHTTCEEEEEE
T ss_pred CCcEEEEECCccccccchhhhccCchHHHHHHHHHHhhCCcEEEEEe
Confidence 468999997653222 245788888999998755
No 273
>2iuy_A Avigt4, glycosyltransferase; antibiotics, family GT-4, avilamycin A; HET: MES; 2.1A {Streptomyces viridochromogenes} PDB: 2iv3_A*
Probab=49.00 E-value=50 Score=26.72 Aligned_cols=64 Identities=8% Similarity=-0.017 Sum_probs=41.3
Q ss_pred ccEEEEcCC---------CCCCCHHHHHHHHhccCCCCCCcEEEEeCCCcHHHHHHHHHc--CCceEEeCCCCHHHHHHH
Q 026776 85 VDLIITDYC---------MPGMTGYELLKKIKDSSALREIPVVIMSSENILARIDRCLED--GAEDFIVKPVKLSDVKRI 153 (233)
Q Consensus 85 ~DlvllD~~---------mp~~~g~~ll~~Lr~~~~~~~~piIvlt~~~~~~~~~~al~~--Ga~dyL~KP~~~~eL~~~ 153 (233)
.|++++=.. ..+.-|..+++.+.. .+|+|+.-. . ...+.+.. |..+++..| +.+++.+.
T Consensus 232 adv~v~ps~~~~~~~~~~~~E~~~~~~~EAma~-----G~PvI~s~~-~---~~~e~~~~~~~~~g~~~~~-d~~~l~~~ 301 (342)
T 2iuy_A 232 AHAVLAMSQAVTGPWGGIWCEPGATVVSEAAVS-----GTPVVGTGN-G---CLAEIVPSVGEVVGYGTDF-APDEARRT 301 (342)
T ss_dssp CSEEEECCCCCCCTTCSCCCCCCCHHHHHHHHT-----TCCEEECCT-T---THHHHGGGGEEECCSSSCC-CHHHHHHH
T ss_pred CCEEEECCcccccccccccccCccHHHHHHHhc-----CCCEEEcCC-C---ChHHHhcccCCCceEEcCC-CHHHHHHH
Confidence 577776433 134456777777753 677775432 2 23455666 788899999 99999877
Q ss_pred HHHHh
Q 026776 154 KDYLT 158 (233)
Q Consensus 154 ~~~l~ 158 (233)
+..+.
T Consensus 302 i~~l~ 306 (342)
T 2iuy_A 302 LAGLP 306 (342)
T ss_dssp HHTSC
T ss_pred HHHHH
Confidence 66554
No 274
>2i7c_A Spermidine synthase; transferase, structural genomics consor; HET: AAT 1PG; 1.71A {Plasmodium falciparum} PDB: 2hte_A* 3b7p_A* 3rie_A* 2pwp_A*
Probab=48.97 E-value=89 Score=25.15 Aligned_cols=67 Identities=15% Similarity=0.089 Sum_probs=40.1
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhc-----CCEE-EEECCHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCCCCC--H--
Q 026776 30 VHVLAVDDSFVDRKVIERLLTIS-----SCKV-TAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMT--G-- 99 (233)
Q Consensus 30 ~~ILIVddd~~~~~~l~~~L~~~-----g~~v-~~a~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp~~~--g-- 99 (233)
.+|..||-++...+..++.+... .-.+ ....++.+.+... ...||+|++|...+... .
T Consensus 103 ~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~------------~~~fD~Ii~d~~~~~~~~~~l~ 170 (283)
T 2i7c_A 103 ENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENV------------TNTYDVIIVDSSDPIGPAETLF 170 (283)
T ss_dssp CEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHC------------CSCEEEEEEECCCTTTGGGGGS
T ss_pred CEEEEEECCHHHHHHHHHHhHHhccccCCCcEEEEECChHHHHHhC------------CCCceEEEEcCCCCCCcchhhh
Confidence 57888888888888877777542 1122 2345655544322 34699999997554321 1
Q ss_pred -HHHHHHHhc
Q 026776 100 -YELLKKIKD 108 (233)
Q Consensus 100 -~~ll~~Lr~ 108 (233)
.++++.++.
T Consensus 171 ~~~~l~~~~~ 180 (283)
T 2i7c_A 171 NQNFYEKIYN 180 (283)
T ss_dssp SHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 355555544
No 275
>2gn4_A FLAA1 protein, UDP-GLCNAC C6 dehydratase; rossmann fold, TYK triad, SDR, enzyme, NADP, NADPH, lyase; HET: NDP UD1 MES; 1.90A {Helicobacter pylori} PDB: 2gn6_A* 2gn8_A* 2gn9_A* 2gna_A*
Probab=48.90 E-value=42 Score=27.81 Aligned_cols=51 Identities=8% Similarity=-0.042 Sum_probs=29.1
Q ss_pred eeeeccccccCCCCCCCCCcEEEEEeCCHHHHHHHHHHHhhc-CC-EEEEECC
Q 026776 11 RLISDEIDGFDLSPSDTEEVHVLAVDDSFVDRKVIERLLTIS-SC-KVTAVDS 61 (233)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~ILIVddd~~~~~~l~~~L~~~-g~-~v~~a~~ 61 (233)
|+++++..+++--....+..+|||....-.+...+.+.|.+. |+ +|..+..
T Consensus 3 ~~~~~~~~~~~~~~~~~~~k~vlVTGatG~iG~~l~~~L~~~~g~~~V~~~~r 55 (344)
T 2gn4_A 3 HHHHHGSMSMPNHQNMLDNQTILITGGTGSFGKCFVRKVLDTTNAKKIIVYSR 55 (344)
T ss_dssp -------------CCTTTTCEEEEETTTSHHHHHHHHHHHHHCCCSEEEEEES
T ss_pred CccCCCCCCCccHHHhhCCCEEEEECCCcHHHHHHHHHHHhhCCCCEEEEEEC
Confidence 345556666554444556788999998888888888887777 86 8776553
No 276
>1x1o_A Nicotinate-nucleotide pyrophosphorylase; transferase, structural genomics, NPPSFA, national project O structural and functional analyses; 1.90A {Thermus thermophilus}
Probab=48.86 E-value=1.1e+02 Score=25.07 Aligned_cols=92 Identities=18% Similarity=0.184 Sum_probs=53.3
Q ss_pred EEEEeCCHHHHH----HHHHHHhhcCC---EEEEECCHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCCCCCHHHHHH
Q 026776 32 VLAVDDSFVDRK----VIERLLTISSC---KVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLK 104 (233)
Q Consensus 32 ILIVddd~~~~~----~l~~~L~~~g~---~v~~a~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp~~~g~~ll~ 104 (233)
+||.||+..... .++..-+..+. -...+.+.+++.+.+. ...|.|.+|-.-|. .--+..+
T Consensus 169 ~LIkdnHi~~aggi~~av~~ar~~~~~~~~IgVev~t~eea~eA~~------------aGaD~I~ld~~~~~-~~k~av~ 235 (286)
T 1x1o_A 169 ILLKENHVRAAGGVGEAVRRAKARAPHYLKVEVEVRSLEELEEALE------------AGADLILLDNFPLE-ALREAVR 235 (286)
T ss_dssp EEECHHHHHHHTSHHHHHHHHHHHSCTTSCEEEEESSHHHHHHHHH------------HTCSEEEEESCCHH-HHHHHHH
T ss_pred eEEECCHHHHhCCHHHHHHHHHHhCCCCCEEEEEeCCHHHHHHHHH------------cCCCEEEECCCCHH-HHHHHHH
Confidence 677777765432 23333233332 2335678888887763 24799999963221 1112222
Q ss_pred HHhccCCCCCCcEEEEeCCCcHHHHHHHHHcCCceEEe
Q 026776 105 KIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIV 142 (233)
Q Consensus 105 ~Lr~~~~~~~~piIvlt~~~~~~~~~~al~~Ga~dyL~ 142 (233)
.++ . ++|+++ ++.-+.+.+.+..+.|+|.+-.
T Consensus 236 ~v~---~--~ipi~A-sGGIt~eni~~~a~tGvD~IsV 267 (286)
T 1x1o_A 236 RVG---G--RVPLEA-SGNMTLERAKAAAEAGVDYVSV 267 (286)
T ss_dssp HHT---T--SSCEEE-ESSCCHHHHHHHHHHTCSEEEC
T ss_pred HhC---C--CCeEEE-EcCCCHHHHHHHHHcCCCEEEE
Confidence 222 1 466655 5556678888899999987653
No 277
>3hm2_A Precorrin-6Y C5,15-methyltransferase; alpha-beta-sandwich, structural genomics, PSI-2, protein structure initiative; 2.21A {Corynebacterium diphtheriae}
Probab=48.80 E-value=59 Score=23.37 Aligned_cols=65 Identities=11% Similarity=0.003 Sum_probs=38.3
Q ss_pred CcEEEEEeCCHHHHHHHHHHHhhcCC--EEEEECCHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCCCCCHHHHHHHH
Q 026776 29 EVHVLAVDDSFVDRKVIERLLTISSC--KVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKKI 106 (233)
Q Consensus 29 ~~~ILIVddd~~~~~~l~~~L~~~g~--~v~~a~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp~~~g~~ll~~L 106 (233)
..+|..+|-++...+..++.+...|. .+....+..+.+.. ....+|+|++...+.. ..+++.+
T Consensus 49 ~~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~d~~~~~~~------------~~~~~D~i~~~~~~~~---~~~l~~~ 113 (178)
T 3hm2_A 49 QTTAVCFEISEERRERILSNAINLGVSDRIAVQQGAPRAFDD------------VPDNPDVIFIGGGLTA---PGVFAAA 113 (178)
T ss_dssp SEEEEEECSCHHHHHHHHHHHHTTTCTTSEEEECCTTGGGGG------------CCSCCSEEEECC-TTC---TTHHHHH
T ss_pred CCeEEEEeCCHHHHHHHHHHHHHhCCCCCEEEecchHhhhhc------------cCCCCCEEEECCcccH---HHHHHHH
Confidence 46788888888888888877776654 24333332221110 1146999999876665 3344544
Q ss_pred hc
Q 026776 107 KD 108 (233)
Q Consensus 107 r~ 108 (233)
..
T Consensus 114 ~~ 115 (178)
T 3hm2_A 114 WK 115 (178)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 278
>1i1q_B Anthranilate synthase component II; tryptophan biosynthesis, lyase; HET: TRP; 1.90A {Salmonella typhimurium} SCOP: c.23.16.1 PDB: 1i7q_B 1i7s_B*
Probab=48.56 E-value=37 Score=25.65 Aligned_cols=33 Identities=12% Similarity=0.033 Sum_probs=25.6
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhcCCEEEEECCH
Q 026776 30 VHVLAVDDSFVDRKVIERLLTISSCKVTAVDSG 62 (233)
Q Consensus 30 ~~ILIVddd~~~~~~l~~~L~~~g~~v~~a~~~ 62 (233)
++|+|||.-..+...+.+.|++.|+++....+.
T Consensus 1 ~~i~iiDn~~s~~~~i~~~l~~~G~~~~v~~~~ 33 (192)
T 1i1q_B 1 ADILLLDNIDSFTWNLADQLRTNGHNVVIYRNH 33 (192)
T ss_dssp CEEEEEECSCSSHHHHHHHHHHTTCEEEEEETT
T ss_pred CcEEEEECCccHHHHHHHHHHHCCCeEEEEECC
Confidence 479999966556777788889999888776654
No 279
>2v82_A 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; lyase, kdpgal; HET: KDP; 2.1A {Escherichia coli} PDB: 2v81_A*
Probab=48.46 E-value=34 Score=26.23 Aligned_cols=80 Identities=11% Similarity=0.087 Sum_probs=49.3
Q ss_pred HHhhcCCEE-EEECCHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCCCCCHHHHHHHHhccCCCCCCcEEEEeCCCcH
Q 026776 48 LLTISSCKV-TAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKKIKDSSALREIPVVIMSSENIL 126 (233)
Q Consensus 48 ~L~~~g~~v-~~a~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp~~~g~~ll~~Lr~~~~~~~~piIvlt~~~~~ 126 (233)
..+..|..+ ..+.+..++..... ...|.|++-. .+..|.+.++++++... ..+||++..+-. .
T Consensus 96 ~~~~~g~~~~~g~~t~~e~~~a~~------------~G~d~v~v~~--t~~~g~~~~~~l~~~~~-~~ipvia~GGI~-~ 159 (212)
T 2v82_A 96 RAVGYGMTVCPGCATATEAFTALE------------AGAQALKIFP--SSAFGPQYIKALKAVLP-SDIAVFAVGGVT-P 159 (212)
T ss_dssp HHHHTTCEEECEECSHHHHHHHHH------------TTCSEEEETT--HHHHCHHHHHHHHTTSC-TTCEEEEESSCC-T
T ss_pred HHHHcCCCEEeecCCHHHHHHHHH------------CCCCEEEEec--CCCCCHHHHHHHHHhcc-CCCeEEEeCCCC-H
Confidence 344455432 22567777655441 2478887621 11236788888876432 147888776654 6
Q ss_pred HHHHHHHHcCCceEEeC
Q 026776 127 ARIDRCLEDGAEDFIVK 143 (233)
Q Consensus 127 ~~~~~al~~Ga~dyL~K 143 (233)
+.+.+++++|++.+..=
T Consensus 160 ~~i~~~~~~Ga~gv~vG 176 (212)
T 2v82_A 160 ENLAQWIDAGCAGAGLG 176 (212)
T ss_dssp TTHHHHHHHTCSEEEEC
T ss_pred HHHHHHHHcCCCEEEEC
Confidence 67778889999998743
No 280
>3cea_A MYO-inositol 2-dehydrogenase; NP_786804.1, oxidoreductase FA NAD-binding rossmann fold, structural genomics; HET: NAD; 2.40A {Lactobacillus plantarum WCFS1}
Probab=48.46 E-value=1.1e+02 Score=25.01 Aligned_cols=109 Identities=14% Similarity=0.218 Sum_probs=56.1
Q ss_pred CCCcEEEEEeCCHHHHHHHHHHH-hhcCCEEEE-ECCHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCCCCCHHHHHH
Q 026776 27 TEEVHVLAVDDSFVDRKVIERLL-TISSCKVTA-VDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLK 104 (233)
Q Consensus 27 ~~~~~ILIVddd~~~~~~l~~~L-~~~g~~v~~-a~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp~~~g~~ll~ 104 (233)
+++++|.||.--..-...+..+. +..++++.. ++...+..+.+. .....+-+.-| --+
T Consensus 6 ~~~~~v~iiG~G~ig~~~~~~l~~~~~~~~~vav~d~~~~~~~~~a----------~~~g~~~~~~~-------~~~--- 65 (346)
T 3cea_A 6 RKPLRAAIIGLGRLGERHARHLVNKIQGVKLVAACALDSNQLEWAK----------NELGVETTYTN-------YKD--- 65 (346)
T ss_dssp CCCEEEEEECCSTTHHHHHHHHHHTCSSEEEEEEECSCHHHHHHHH----------HTTCCSEEESC-------HHH---
T ss_pred CCcceEEEEcCCHHHHHHHHHHHhcCCCcEEEEEecCCHHHHHHHH----------HHhCCCcccCC-------HHH---
Confidence 35689999987655444444444 334677654 343333333321 11111112211 112
Q ss_pred HHhccCCCCCCcEEEEeCCC--cHHHHHHHHHcCCceEEeCCCC--HHHHHHHHHHHhh
Q 026776 105 KIKDSSALREIPVVIMSSEN--ILARIDRCLEDGAEDFIVKPVK--LSDVKRIKDYLTR 159 (233)
Q Consensus 105 ~Lr~~~~~~~~piIvlt~~~--~~~~~~~al~~Ga~dyL~KP~~--~~eL~~~~~~l~~ 159 (233)
.+.. . .+-+|+++... ..+.+..+++.|..=|+.||+. .++..++.+...+
T Consensus 66 ~l~~--~--~~D~V~i~tp~~~h~~~~~~al~~G~~v~~eKp~~~~~~~~~~l~~~a~~ 120 (346)
T 3cea_A 66 MIDT--E--NIDAIFIVAPTPFHPEMTIYAMNAGLNVFCEKPLGLDFNEVDEMAKVIKS 120 (346)
T ss_dssp HHTT--S--CCSEEEECSCGGGHHHHHHHHHHTTCEEEECSCCCSCHHHHHHHHHHHHT
T ss_pred HhcC--C--CCCEEEEeCChHhHHHHHHHHHHCCCEEEEcCCCCCCHHHHHHHHHHHHh
Confidence 2221 1 34455554433 3566778889998888889964 5566566555443
No 281
>1uir_A Polyamine aminopropyltransferase; spermidien synthase, spermine synthase, riken STR genomics/proteomics initiative, RSGI; 2.00A {Thermus thermophilus} SCOP: c.66.1.17 PDB: 3anx_A*
Probab=48.34 E-value=88 Score=25.64 Aligned_cols=68 Identities=19% Similarity=0.165 Sum_probs=42.7
Q ss_pred CcEEEEEeCCHHHHHHHHHHHhh--cC----CEE-EEECCHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCCC-CC--
Q 026776 29 EVHVLAVDDSFVDRKVIERLLTI--SS----CKV-TAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPG-MT-- 98 (233)
Q Consensus 29 ~~~ILIVddd~~~~~~l~~~L~~--~g----~~v-~~a~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp~-~~-- 98 (233)
..+|..||-++...+..++.+.. .| -.+ ....++.+.+... ...||+|++|...+. .+
T Consensus 101 ~~~v~~vDid~~~i~~ar~~~~~~~~~~~~~~~v~~~~~D~~~~l~~~------------~~~fD~Ii~d~~~~~~~~~~ 168 (314)
T 1uir_A 101 VEKAVMVDIDGELVEVAKRHMPEWHQGAFDDPRAVLVIDDARAYLERT------------EERYDVVIIDLTDPVGEDNP 168 (314)
T ss_dssp CCEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCHHHHHHHC------------CCCEEEEEEECCCCBSTTCG
T ss_pred CCEEEEEECCHHHHHHHHHHhHhhccccccCCceEEEEchHHHHHHhc------------CCCccEEEECCCCcccccCc
Confidence 35789999998888888877653 11 122 2355665554432 346999999987654 11
Q ss_pred -----HHHHHHHHhc
Q 026776 99 -----GYELLKKIKD 108 (233)
Q Consensus 99 -----g~~ll~~Lr~ 108 (233)
..++++.++.
T Consensus 169 ~~~l~~~~~l~~~~~ 183 (314)
T 1uir_A 169 ARLLYTVEFYRLVKA 183 (314)
T ss_dssp GGGGSSHHHHHHHHH
T ss_pred chhccHHHHHHHHHH
Confidence 2466666654
No 282
>1h1y_A D-ribulose-5-phosphate 3-epimerase; oxidative pentose phosphate pathway, isomerase; 1.87A {Oryza sativa} SCOP: c.1.2.2 PDB: 1h1z_A
Probab=48.31 E-value=39 Score=26.41 Aligned_cols=57 Identities=16% Similarity=0.270 Sum_probs=38.7
Q ss_pred cccEEEEcCCCCCCC-------HHHHHHHHhccCCCCCCcEEEEeCCCcHHHHHHHHHcCCceEEeC
Q 026776 84 KVDLIITDYCMPGMT-------GYELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVK 143 (233)
Q Consensus 84 ~~DlvllD~~mp~~~-------g~~ll~~Lr~~~~~~~~piIvlt~~~~~~~~~~al~~Ga~dyL~K 143 (233)
..|.|+++...|+.. +++.++++|+... ..|+++.-+=. .+.+.+++++|+|.++.=
T Consensus 138 ~~d~vl~~sv~pg~~g~~~~~~~l~~i~~~~~~~~--~~pi~v~GGI~-~~ni~~~~~aGaD~vvvG 201 (228)
T 1h1y_A 138 PVELVLVMTVEPGFGGQKFMPEMMEKVRALRKKYP--SLDIEVDGGLG-PSTIDVAASAGANCIVAG 201 (228)
T ss_dssp CCSEEEEESSCTTCSSCCCCGGGHHHHHHHHHHCT--TSEEEEESSCS-TTTHHHHHHHTCCEEEES
T ss_pred CCCEEEEEeecCCCCcccCCHHHHHHHHHHHHhcC--CCCEEEECCcC-HHHHHHHHHcCCCEEEEC
Confidence 478999887766533 4666777776543 66776554433 456677888899998653
No 283
>3ovp_A Ribulose-phosphate 3-epimerase; iron binding, isomerase; HET: XPE; 1.70A {Homo sapiens} SCOP: c.1.2.0 PDB: 3ovq_A* 3ovr_A* 3qc3_A
Probab=48.21 E-value=37 Score=26.82 Aligned_cols=56 Identities=14% Similarity=0.314 Sum_probs=38.2
Q ss_pred cccEEEEcCCCCCCCH-------HHHHHHHhccCCCCCCcEEEEeCCCcHHHHHHHHHcCCceEEe
Q 026776 84 KVDLIITDYCMPGMTG-------YELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIV 142 (233)
Q Consensus 84 ~~DlvllD~~mp~~~g-------~~ll~~Lr~~~~~~~~piIvlt~~~~~~~~~~al~~Ga~dyL~ 142 (233)
..|.|++...-|+..| ++-++++|+... ..+| .+.+.-+.+.+..+.++|||.++.
T Consensus 134 ~~D~Vl~msv~pGf~Gq~f~~~~l~ki~~lr~~~~--~~~I-~VdGGI~~~t~~~~~~aGAd~~Vv 196 (228)
T 3ovp_A 134 QIDMALVMTVEPGFGGQKFMEDMMPKVHWLRTQFP--SLDI-EVDGGVGPDTVHKCAEAGANMIVS 196 (228)
T ss_dssp GCSEEEEESSCTTTCSCCCCGGGHHHHHHHHHHCT--TCEE-EEESSCSTTTHHHHHHHTCCEEEE
T ss_pred cCCeEEEeeecCCCCCcccCHHHHHHHHHHHHhcC--CCCE-EEeCCcCHHHHHHHHHcCCCEEEE
Confidence 3688887666676655 455777777543 4454 455555667788899999998765
No 284
>3c1a_A Putative oxidoreductase; ZP_00056571.1, oxidoreductase FAM binding rossmann fold, structural genomics; HET: MSE PG4 PGE; 1.85A {Magnetospirillum magnetotacticum}
Probab=48.14 E-value=70 Score=26.03 Aligned_cols=45 Identities=13% Similarity=0.258 Sum_probs=28.9
Q ss_pred CcEEEEeCC--CcHHHHHHHHHcCCceEEeCCC--CHHHHHHHHHHHhh
Q 026776 115 IPVVIMSSE--NILARIDRCLEDGAEDFIVKPV--KLSDVKRIKDYLTR 159 (233)
Q Consensus 115 ~piIvlt~~--~~~~~~~~al~~Ga~dyL~KP~--~~~eL~~~~~~l~~ 159 (233)
+-+|+++.. ...+.+..+++.|..=++.||+ +.++..++.+...+
T Consensus 70 ~D~V~i~tp~~~h~~~~~~al~~Gk~v~~eKP~~~~~~~~~~l~~~a~~ 118 (315)
T 3c1a_A 70 VEAVIIATPPATHAEITLAAIASGKAVLVEKPLTLDLAEAEAVAAAAKA 118 (315)
T ss_dssp CCEEEEESCGGGHHHHHHHHHHTTCEEEEESSSCSCHHHHHHHHHHHHH
T ss_pred CCEEEEeCChHHHHHHHHHHHHCCCcEEEcCCCcCCHHHHHHHHHHHHH
Confidence 344444433 3356777889999888899997 45566666555443
No 285
>1tqj_A Ribulose-phosphate 3-epimerase; beta-alpha barrel epimerase, isomerase; 1.60A {Synechocystis SP} SCOP: c.1.2.2
Probab=47.95 E-value=20 Score=28.39 Aligned_cols=58 Identities=14% Similarity=0.124 Sum_probs=37.5
Q ss_pred CHHHHHHHHhccCCCCCCcEE--EEeCCCcHHHHHHHHHcCCceEEeCCC--CHHHHHHHHHHHhh
Q 026776 98 TGYELLKKIKDSSALREIPVV--IMSSENILARIDRCLEDGAEDFIVKPV--KLSDVKRIKDYLTR 159 (233)
Q Consensus 98 ~g~~ll~~Lr~~~~~~~~piI--vlt~~~~~~~~~~al~~Ga~dyL~KP~--~~~eL~~~~~~l~~ 159 (233)
.|.++++.||+.. +.++. +++.+ -......+.++|++.+..-.. ..+...+.++.+..
T Consensus 49 ~g~~~v~~lr~~~---~~~~~vhlmv~d-p~~~i~~~~~aGadgv~vh~e~~~~~~~~~~~~~i~~ 110 (230)
T 1tqj_A 49 IGPLIVDAIRPLT---KKTLDVHLMIVE-PEKYVEDFAKAGADIISVHVEHNASPHLHRTLCQIRE 110 (230)
T ss_dssp BCHHHHHHHGGGC---CSEEEEEEESSS-GGGTHHHHHHHTCSEEEEECSTTTCTTHHHHHHHHHH
T ss_pred hhHHHHHHHHhhc---CCcEEEEEEccC-HHHHHHHHHHcCCCEEEECcccccchhHHHHHHHHHH
Confidence 3779999999753 34555 55543 344677889999999866554 33455555555543
No 286
>3o07_A Pyridoxine biosynthesis protein SNZ1; (beta/alpha)8-barrel, pyridoxal 5-phosphate synthase, PLP G3 SNO1, biosynthetic protein; HET: 1GP; 1.80A {Saccharomyces cerevisiae} PDB: 3o06_A 3o05_A* 3fem_A
Probab=47.94 E-value=18 Score=29.94 Aligned_cols=42 Identities=21% Similarity=0.318 Sum_probs=33.1
Q ss_pred HHHHHHHHhccCCCCCCcEEEEeCC--CcHHHHHHHHHcCCceEEeC
Q 026776 99 GYELLKKIKDSSALREIPVVIMSSE--NILARIDRCLEDGAEDFIVK 143 (233)
Q Consensus 99 g~~ll~~Lr~~~~~~~~piIvlt~~--~~~~~~~~al~~Ga~dyL~K 143 (233)
.+++++++++.. .+|||++... .+.+.+.++++.|+++++.=
T Consensus 186 d~elI~~Ike~~---~IPVV~IAnGGI~TpedA~~~le~GaDGVmVG 229 (291)
T 3o07_A 186 PVSLLKDVLEKG---KLPVVNFAAGGVATPADAALLMQLGCDGVFVG 229 (291)
T ss_dssp CHHHHHHHHHHT---SCSSCEEBCSSCCSHHHHHHHHHTTCSCEEEC
T ss_pred CHHHHHHHHHcc---CCCEEEecCCCCCCHHHHHHHHHhCCCEEEEc
Confidence 478899998763 7899887443 35788999999999999754
No 287
>2gjl_A Hypothetical protein PA1024; 2-nitropropane dioxygenase, 2-nitropropane, FMN, oxidoreduct; HET: FMN; 2.00A {Pseudomonas aeruginosa PAO1} PDB: 2gjn_A*
Probab=47.80 E-value=69 Score=26.47 Aligned_cols=51 Identities=10% Similarity=0.116 Sum_probs=37.2
Q ss_pred CcccEEEEcCCCCCCCHHHHHHHHhccCCCCCCcEEEEeCCCcHHHHHHHHHcCCceEEeC
Q 026776 83 LKVDLIITDYCMPGMTGYELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVK 143 (233)
Q Consensus 83 ~~~DlvllD~~mp~~~g~~ll~~Lr~~~~~~~~piIvlt~~~~~~~~~~al~~Ga~dyL~K 143 (233)
..+|+|.+....| .++++++++. .++++... ...+.+..+.+.|+|.++.-
T Consensus 95 ~g~d~V~~~~g~p----~~~~~~l~~~----gi~vi~~v--~t~~~a~~~~~~GaD~i~v~ 145 (328)
T 2gjl_A 95 AGIRVVETAGNDP----GEHIAEFRRH----GVKVIHKC--TAVRHALKAERLGVDAVSID 145 (328)
T ss_dssp TTCCEEEEEESCC----HHHHHHHHHT----TCEEEEEE--SSHHHHHHHHHTTCSEEEEE
T ss_pred cCCCEEEEcCCCc----HHHHHHHHHc----CCCEEeeC--CCHHHHHHHHHcCCCEEEEE
Confidence 4689999887665 5788888874 56666543 34566778889999998873
No 288
>1h5y_A HISF; histidine biosynthesis, TIM-barrel; 2.0A {Pyrobaculum aerophilum} SCOP: c.1.2.1
Probab=47.77 E-value=47 Score=25.76 Aligned_cols=41 Identities=20% Similarity=0.319 Sum_probs=31.8
Q ss_pred HHHHHHHHhccCCCCCCcEEEEeCCCcHHHHHHHHHcCCceEEe
Q 026776 99 GYELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIV 142 (233)
Q Consensus 99 g~~ll~~Lr~~~~~~~~piIvlt~~~~~~~~~~al~~Ga~dyL~ 142 (233)
..++++.+++.. .+|+++-..-.+.+.+.+++++|++.+..
T Consensus 65 ~~~~i~~i~~~~---~ipvi~~g~i~~~~~~~~~~~~Gad~V~i 105 (253)
T 1h5y_A 65 FIDSVKRVAEAV---SIPVLVGGGVRSLEDATTLFRAGADKVSV 105 (253)
T ss_dssp HHHHHHHHHHHC---SSCEEEESSCCSHHHHHHHHHHTCSEEEE
T ss_pred cHHHHHHHHHhc---CCCEEEECCCCCHHHHHHHHHcCCCEEEE
Confidence 467788887642 68888777667777888999999998874
No 289
>3iwt_A 178AA long hypothetical molybdenum cofactor biosy protein B; biosynthesis, structural genomics, UNKN function, NPPSFA; HET: PEG; 1.90A {Sulfolobus tokodaii}
Probab=47.58 E-value=53 Score=24.49 Aligned_cols=48 Identities=19% Similarity=0.200 Sum_probs=28.9
Q ss_pred HHHHHHHHHHhhcCCEEEE---ECCHHHHH-HHhhhhhhhhccCCCCCcccEEEEcCCC
Q 026776 40 VDRKVIERLLTISSCKVTA---VDSGRRAL-QFLGLDEEQSINGFDGLKVDLIITDYCM 94 (233)
Q Consensus 40 ~~~~~l~~~L~~~g~~v~~---a~~~~~al-~~l~~~~~~~~~~~~~~~~DlvllD~~m 94 (233)
.+...|.+.|.+.|++|.. +.|..+.+ +.+... .....+|+||+-=.+
T Consensus 40 ~ng~~L~~~L~~~G~~v~~~~iV~Dd~~~i~~al~~~-------~a~~~~DlVittGG~ 91 (178)
T 3iwt_A 40 ESGDIIKQLLIENGHKIIGYSLVPDDKIKILKAFTDA-------LSIDEVDVIISTGGT 91 (178)
T ss_dssp HHHHHHHHHHHHTTCEEEEEEEECSCHHHHHHHHHHH-------HTCTTCCEEEEESCC
T ss_pred chHHHHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHH-------HhcCCCCEEEecCCc
Confidence 4567889999999987754 44443333 333110 023468999986544
No 290
>3sho_A Transcriptional regulator, RPIR family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 1.80A {Sphaerobacter thermophilus}
Probab=47.17 E-value=83 Score=23.17 Aligned_cols=95 Identities=16% Similarity=0.153 Sum_probs=57.7
Q ss_pred EEEEEe--CCHHHHHHHHHHHhhcCCEEEEEC-CHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCCCC--CHHHHHHH
Q 026776 31 HVLAVD--DSFVDRKVIERLLTISSCKVTAVD-SGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGM--TGYELLKK 105 (233)
Q Consensus 31 ~ILIVd--dd~~~~~~l~~~L~~~g~~v~~a~-~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp~~--~g~~ll~~ 105 (233)
+|.++. ........+...|...|..+.... +..+....+. .-.+=|++|+ +...+. +-+++++.
T Consensus 41 ~I~i~G~G~S~~~a~~~~~~l~~~g~~~~~~~~~~~~~~~~~~----------~~~~~d~~i~-iS~sG~t~~~~~~~~~ 109 (187)
T 3sho_A 41 HVIVVGMGFSAAVAVFLGHGLNSLGIRTTVLTEGGSTLTITLA----------NLRPTDLMIG-VSVWRYLRDTVAALAG 109 (187)
T ss_dssp EEEEECCGGGHHHHHHHHHHHHHTTCCEEEECCCTHHHHHHHH----------TCCTTEEEEE-ECCSSCCHHHHHHHHH
T ss_pred EEEEEecCchHHHHHHHHHHHHhcCCCEEEecCCchhHHHHHh----------cCCCCCEEEE-EeCCCCCHHHHHHHHH
Confidence 566664 456667777888888898888887 5555544432 1112355544 333443 45677777
Q ss_pred HhccCCCCCCcEEEEeCCCcHHHHHHHHHcCCceEEeCCC
Q 026776 106 IKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPV 145 (233)
Q Consensus 106 Lr~~~~~~~~piIvlt~~~~~~~~~~al~~Ga~dyL~KP~ 145 (233)
.++. ..++|.+|........ ..+|.+|.-|.
T Consensus 110 ak~~----g~~vi~IT~~~~s~l~-----~~ad~~l~~~~ 140 (187)
T 3sho_A 110 AAER----GVPTMALTDSSVSPPA-----RIADHVLVAAT 140 (187)
T ss_dssp HHHT----TCCEEEEESCTTSHHH-----HHCSEEEECCC
T ss_pred HHHC----CCCEEEEeCCCCCcch-----hhCcEEEEecC
Confidence 7765 6799999987654322 22566665544
No 291
>3f4w_A Putative hexulose 6 phosphate synthase; humps, malonate, lyase; 1.65A {Salmonella typhimurium} SCOP: c.1.2.0
Probab=47.04 E-value=47 Score=25.30 Aligned_cols=59 Identities=15% Similarity=0.084 Sum_probs=31.9
Q ss_pred CHHHHHHHHhccCCCCCCcEEE--EeCCCcHHHHHHHHHcCCceEEeCCCCH-HHHHHHHHHHh
Q 026776 98 TGYELLKKIKDSSALREIPVVI--MSSENILARIDRCLEDGAEDFIVKPVKL-SDVKRIKDYLT 158 (233)
Q Consensus 98 ~g~~ll~~Lr~~~~~~~~piIv--lt~~~~~~~~~~al~~Ga~dyL~KP~~~-~eL~~~~~~l~ 158 (233)
.|.++++.+|+..+ +.|+.+ ...+.....+..+.++|++.++.-.... +.+.++++.+.
T Consensus 39 ~g~~~i~~ir~~~~--~~~i~~~~~~~~~~~~~~~~~~~~Gad~v~v~~~~~~~~~~~~~~~~~ 100 (211)
T 3f4w_A 39 EGVNAIKAIKEKYP--HKEVLADAKIMDGGHFESQLLFDAGADYVTVLGVTDVLTIQSCIRAAK 100 (211)
T ss_dssp HTTHHHHHHHHHCT--TSEEEEEEEECSCHHHHHHHHHHTTCSEEEEETTSCHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHhCC--CCEEEEEEEeccchHHHHHHHHhcCCCEEEEeCCCChhHHHHHHHHHH
Confidence 46677777776533 556543 2223333336777788887776643332 33444444443
No 292
>3e9m_A Oxidoreductase, GFO/IDH/MOCA family; GFO/LDH/MOCA, PSI-II, dimeric dihydodiol dehydrogenase, structural genomics; 2.70A {Enterococcus faecalis}
Probab=46.99 E-value=60 Score=26.70 Aligned_cols=108 Identities=12% Similarity=0.159 Sum_probs=56.9
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHhhcCCEEEEECC-HHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCCCCCHHHHHHHH
Q 026776 28 EEVHVLAVDDSFVDRKVIERLLTISSCKVTAVDS-GRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKKI 106 (233)
Q Consensus 28 ~~~~ILIVddd~~~~~~l~~~L~~~g~~v~~a~~-~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp~~~g~~ll~~L 106 (233)
++++|.||.--..-...+..+.+..++++..+.+ ..+..+.+.. .+.+. -.-.+--+++
T Consensus 4 ~~~~igiiG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~~~~------------~~~~~-----~~~~~~~~ll--- 63 (330)
T 3e9m_A 4 DKIRYGIMSTAQIVPRFVAGLRESAQAEVRGIASRRLENAQKMAK------------ELAIP-----VAYGSYEELC--- 63 (330)
T ss_dssp CCEEEEECSCCTTHHHHHHHHHHSSSEEEEEEBCSSSHHHHHHHH------------HTTCC-----CCBSSHHHHH---
T ss_pred CeEEEEEECchHHHHHHHHHHHhCCCcEEEEEEeCCHHHHHHHHH------------HcCCC-----ceeCCHHHHh---
Confidence 5689999987655555554444435677765432 2222222210 11110 0001222222
Q ss_pred hccCCCCCCcEEEEeCC--CcHHHHHHHHHcCCceEEeCCCC--HHHHHHHHHHHhh
Q 026776 107 KDSSALREIPVVIMSSE--NILARIDRCLEDGAEDFIVKPVK--LSDVKRIKDYLTR 159 (233)
Q Consensus 107 r~~~~~~~~piIvlt~~--~~~~~~~~al~~Ga~dyL~KP~~--~~eL~~~~~~l~~ 159 (233)
.. . .+-+|+++.. ...+.+..++++|..=|+.||+. .++..++.+...+
T Consensus 64 ~~--~--~~D~V~i~tp~~~h~~~~~~al~~gk~vl~EKP~~~~~~e~~~l~~~a~~ 116 (330)
T 3e9m_A 64 KD--E--TIDIIYIPTYNQGHYSAAKLALSQGKPVLLEKPFTLNAAEAEELFAIAQE 116 (330)
T ss_dssp HC--T--TCSEEEECCCGGGHHHHHHHHHHTTCCEEECSSCCSSHHHHHHHHHHHHH
T ss_pred cC--C--CCCEEEEcCCCHHHHHHHHHHHHCCCeEEEeCCCCCCHHHHHHHHHHHHH
Confidence 21 1 3344444433 34566788999999999999954 5666666665554
No 293
>3e82_A Putative oxidoreductase; NAD, GFO/IDH/MOCA family, PSI-2, NYSGXRC, 11136F, structural genomics, protein structure initiative; 2.04A {Klebsiella pneumoniae subsp}
Probab=46.76 E-value=60 Score=27.19 Aligned_cols=105 Identities=12% Similarity=0.237 Sum_probs=56.6
Q ss_pred CCCcEEEEEeCCHHHHHHHHHHHhhc-CCEEEEEC--CHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCCCCCHHHHH
Q 026776 27 TEEVHVLAVDDSFVDRKVIERLLTIS-SCKVTAVD--SGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELL 103 (233)
Q Consensus 27 ~~~~~ILIVddd~~~~~~l~~~L~~~-g~~v~~a~--~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp~~~g~~ll 103 (233)
+++++|.||.--..-.......+... ++++..+. +.+.+-+.. +.+-..+ +-
T Consensus 5 ~~~~rvgiiG~G~~g~~~~~~~l~~~~~~~l~av~d~~~~~~~~~~---------------~~~~~~~------~~---- 59 (364)
T 3e82_A 5 NNTINIALIGYGFVGKTFHAPLIRSVPGLNLAFVASRDEEKVKRDL---------------PDVTVIA------SP---- 59 (364)
T ss_dssp --CEEEEEECCSHHHHHTHHHHHHTSTTEEEEEEECSCHHHHHHHC---------------TTSEEES------CH----
T ss_pred CCcceEEEECCCHHHHHHHHHHHhhCCCeEEEEEEcCCHHHHHhhC---------------CCCcEEC------CH----
Confidence 35799999998765554344455544 67776443 332221110 1111111 11
Q ss_pred HHHhccCCCCCCcEEEEeCCC--cHHHHHHHHHcCCceEEeCCC--CHHHHHHHHHHHhh
Q 026776 104 KKIKDSSALREIPVVIMSSEN--ILARIDRCLEDGAEDFIVKPV--KLSDVKRIKDYLTR 159 (233)
Q Consensus 104 ~~Lr~~~~~~~~piIvlt~~~--~~~~~~~al~~Ga~dyL~KP~--~~~eL~~~~~~l~~ 159 (233)
+.+-.. . .+-+|+++... ..+.+..|+++|..=|+.||+ +.++..++++...+
T Consensus 60 ~~ll~~-~--~~D~V~i~tp~~~H~~~~~~al~aGk~Vl~EKPla~~~~e~~~l~~~a~~ 116 (364)
T 3e82_A 60 EAAVQH-P--DVDLVVIASPNATHAPLARLALNAGKHVVVDKPFTLDMQEARELIALAEE 116 (364)
T ss_dssp HHHHTC-T--TCSEEEECSCGGGHHHHHHHHHHTTCEEEECSCSCSSHHHHHHHHHHHHH
T ss_pred HHHhcC-C--CCCEEEEeCChHHHHHHHHHHHHCCCcEEEeCCCcCCHHHHHHHHHHHHH
Confidence 222211 1 44455554433 356778899999999999996 45666666665554
No 294
>1lnq_A MTHK channels, potassium channel related protein; rossman fold, helix bundle, membrane protein; 3.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: c.2.1.9 d.286.1.1 f.14.1.1 PDB: 3rbz_A
Probab=46.66 E-value=1.1e+02 Score=25.09 Aligned_cols=105 Identities=12% Similarity=0.052 Sum_probs=52.1
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhcCCEEEEECCHHHHHHHhhhhhhh----------hccCCCCCcccEEEEcCCCCCCCH
Q 026776 30 VHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQ----------SINGFDGLKVDLIITDYCMPGMTG 99 (233)
Q Consensus 30 ~~ILIVddd~~~~~~l~~~L~~~g~~v~~a~~~~~al~~l~~~~~~----------~~~~~~~~~~DlvllD~~mp~~~g 99 (233)
.+|+|+.-...- ..+.+.|...|+ +...+...+.++ +...+-. ......-...|.+++-..- +...
T Consensus 116 ~~viI~G~G~~g-~~l~~~L~~~g~-v~vid~~~~~~~-~~~~~~~~i~gd~~~~~~L~~a~i~~a~~vi~~~~~-d~~n 191 (336)
T 1lnq_A 116 RHVVICGWSEST-LECLRELRGSEV-FVLAEDENVRKK-VLRSGANFVHGDPTRVSDLEKANVRGARAVIVDLES-DSET 191 (336)
T ss_dssp CEEEEESCCHHH-HHHHTTGGGSCE-EEEESCGGGHHH-HHHTTCEEEESCTTSHHHHHHTCSTTEEEEEECCSS-HHHH
T ss_pred CCEEEECCcHHH-HHHHHHHHhCCc-EEEEeCChhhhh-HHhCCcEEEEeCCCCHHHHHhcChhhccEEEEcCCc-cHHH
Confidence 467777665433 334445555566 655554444333 2211000 0000112356777775421 2234
Q ss_pred HHHHHHHhccCCCCCCcEEEEeCCCcHHHHHHHHHcCCceEEe
Q 026776 100 YELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIV 142 (233)
Q Consensus 100 ~~ll~~Lr~~~~~~~~piIvlt~~~~~~~~~~al~~Ga~dyL~ 142 (233)
+..+..+|+..+ +..+++-..+.. ......++|++..+.
T Consensus 192 ~~~~~~ar~~~~--~~~iiar~~~~~--~~~~l~~~G~d~vi~ 230 (336)
T 1lnq_A 192 IHCILGIRKIDE--SVRIIAEAERYE--NIEQLRMAGADQVIS 230 (336)
T ss_dssp HHHHHHHHTTCT--TSEEEEECSSGG--GHHHHHHTTCSEEEC
T ss_pred HHHHHHHHHHCC--CCeEEEEECCHH--HHHHHHHcCCCEEEC
Confidence 455666676654 667777665443 334455789986653
No 295
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=46.58 E-value=46 Score=25.76 Aligned_cols=46 Identities=13% Similarity=0.177 Sum_probs=29.6
Q ss_pred CCCcccEEEEcCC-----CCCCCHHHHHHHHhccCCCCCCcEEEEeCCCcHHHH
Q 026776 81 DGLKVDLIITDYC-----MPGMTGYELLKKIKDSSALREIPVVIMSSENILARI 129 (233)
Q Consensus 81 ~~~~~DlvllD~~-----mp~~~g~~ll~~Lr~~~~~~~~piIvlt~~~~~~~~ 129 (233)
....+|+||+|=- +.-.+--++++.|..++. .. -+++|++......
T Consensus 117 ~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~Rp~--~~-~vIlTGr~ap~~l 167 (196)
T 1g5t_A 117 ADPLLDMVVLDELTYMVAYDYLPLEEVISALNARPG--HQ-TVIITGRGCHRDI 167 (196)
T ss_dssp TCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCT--TC-EEEEECSSCCHHH
T ss_pred hcCCCCEEEEeCCCccccCCCCCHHHHHHHHHhCcC--CC-EEEEECCCCcHHH
Confidence 4567999999943 223456678888887653 44 4556766654443
No 296
>4gmf_A Yersiniabactin biosynthetic protein YBTU; rossmann fold, NADPH dependent thiazoline reductase, oxidore; HET: EPE; 1.85A {Yersinia enterocolitica subsp} PDB: 4gmg_A*
Probab=46.58 E-value=32 Score=29.39 Aligned_cols=34 Identities=12% Similarity=0.199 Sum_probs=28.2
Q ss_pred HHHHHHHHHcCCceEEeCCCCHHHHHHHHHHHhh
Q 026776 126 LARIDRCLEDGAEDFIVKPVKLSDVKRIKDYLTR 159 (233)
Q Consensus 126 ~~~~~~al~~Ga~dyL~KP~~~~eL~~~~~~l~~ 159 (233)
.+.+.+++++|..=++.||++.+|..++++...+
T Consensus 84 ~~~a~~al~aGkhVl~EKPl~~~ea~~l~~~A~~ 117 (372)
T 4gmf_A 84 TQLARHFLARGVHVIQEHPLHPDDISSLQTLAQE 117 (372)
T ss_dssp HHHHHHHHHTTCEEEEESCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCcEEEecCCCHHHHHHHHHHHHH
Confidence 4678889999999999999999988777766554
No 297
>2f6u_A GGGPS, (S)-3-O-geranylgeranylglyceryl phosphate synthase; non-canonical TIM-barrel, prenyltransferase, archaeal lipid synthesis, dimer; HET: CIT; 1.55A {Archaeoglobus fulgidus} SCOP: c.1.4.1 PDB: 2f6x_A*
Probab=46.54 E-value=44 Score=26.68 Aligned_cols=55 Identities=16% Similarity=0.167 Sum_probs=43.3
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhccCCCCCCcEEEEeCCCcHHHHHHHHHcCCceEEeCC
Q 026776 86 DLIITDYCMPGMTGYELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKP 144 (233)
Q Consensus 86 DlvllD~~mp~~~g~~ll~~Lr~~~~~~~~piIvlt~~~~~~~~~~al~~Ga~dyL~KP 144 (233)
.+|.+|. .......++++++++... .+|+++=-+-.+.+.+.++++ ||+..+.-.
T Consensus 165 ~~Vyl~~-~G~~~~~~~i~~i~~~~~--~~Pv~vGgGI~s~e~a~~~~~-gAd~VIVGS 219 (234)
T 2f6u_A 165 PIIYIEY-SGTYGNPELVAEVKKVLD--KARLFYGGGIDSREKAREMLR-YADTIIVGN 219 (234)
T ss_dssp SEEEEEC-TTSCCCHHHHHHHHHHCS--SSEEEEESCCCSHHHHHHHHH-HSSEEEECH
T ss_pred CEEEEeC-CCCcchHHHHHHHHHhCC--CCCEEEEecCCCHHHHHHHHh-CCCEEEECh
Confidence 7888888 555556889999987642 678887767778888888888 999998754
No 298
>1req_B Methylmalonyl-COA mutase; isomerase, intramolecular transferase; HET: B12 DCA; 2.00A {Propionibacterium freudenreichii subspshermanii} SCOP: c.1.19.1 c.23.6.1 PDB: 1e1c_B* 2req_B* 3req_B* 4req_B* 5req_B* 6req_B* 7req_B*
Probab=46.51 E-value=27 Score=32.27 Aligned_cols=94 Identities=10% Similarity=0.036 Sum_probs=57.8
Q ss_pred HHHHHHHHHHhhcCCEEEEE---CCHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCCC-C-CHHHHHHHHhccCCCCC
Q 026776 40 VDRKVIERLLTISSCKVTAV---DSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPG-M-TGYELLKKIKDSSALRE 114 (233)
Q Consensus 40 ~~~~~l~~~L~~~g~~v~~a---~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp~-~-~g~~ll~~Lr~~~~~~~ 114 (233)
.-...+..+|+..||+|... .+ ++..+.. ....+|+|.+..-+.. + ..-++++.|++.+.
T Consensus 525 ~ga~~va~~l~~aGfeVi~~g~~~t-ee~v~aa-----------~e~~adiv~lSsl~~~~~~~~~~v~~~Lk~aG~--- 589 (637)
T 1req_B 525 GREGFSSPVWHIAGIDTPQVEGGTT-AEIVEAF-----------KKSGAQVADLCSSAKVYAQQGLEVAKALKAAGA--- 589 (637)
T ss_dssp HHHHHHHHHHHHTTCBCCEEECCCH-HHHHHHH-----------HHHTCSEEEEECCHHHHHHHHHHHHHHHHHTTC---
T ss_pred hhHHHHHHHHHhCCeeEEeCCCCCC-HHHHHHH-----------HhcCCCEEEEecccHHHHHHHHHHHHHHHhCCC---
Confidence 33456677888999988764 34 6666665 2346888888654331 1 13467788887643
Q ss_pred CcEEEEeCCCcH--HHHHHHHHcCCceEEeCCCCHHHH
Q 026776 115 IPVVIMSSENIL--ARIDRCLEDGAEDFIVKPVKLSDV 150 (233)
Q Consensus 115 ~piIvlt~~~~~--~~~~~al~~Ga~dyL~KP~~~~eL 150 (233)
..|++.+.... +......+ |+|+|+.--.+..++
T Consensus 590 -~~V~vgG~P~~d~~~~~~~~~-G~D~~~~~g~~~~~~ 625 (637)
T 1req_B 590 -KALYLSGAFKEFGDDAAEAEK-LIDGRLFMGMDVVDT 625 (637)
T ss_dssp -SEEEEESCGGGGGGGHHHHHH-HCCCEECTTCCHHHH
T ss_pred -CeEEEeCCCCccchhhHHHHh-ccceEecCCcCHHHH
Confidence 33456554321 11234445 999999888776665
No 299
>2r60_A Glycosyl transferase, group 1; rossmann-fold; 1.80A {Halothermothrix orenii} PDB: 2r66_A* 2r68_A*
Probab=46.12 E-value=1.4e+02 Score=25.56 Aligned_cols=94 Identities=16% Similarity=0.174 Sum_probs=57.9
Q ss_pred HHHHHHHHhhcCC--EEEEEC--CHHHHHHHhhhhhhhhccCCCCCcc----cEEEEcCCCCCCCHHHHHHHHhccCCCC
Q 026776 42 RKVIERLLTISSC--KVTAVD--SGRRALQFLGLDEEQSINGFDGLKV----DLIITDYCMPGMTGYELLKKIKDSSALR 113 (233)
Q Consensus 42 ~~~l~~~L~~~g~--~v~~a~--~~~~al~~l~~~~~~~~~~~~~~~~----DlvllD~~mp~~~g~~ll~~Lr~~~~~~ 113 (233)
...++++.++.|. .|.... +.++..+.+. .. |++++=.. .+.-|..+++.+..
T Consensus 321 ~~~l~~~~~~~~l~~~V~~~G~v~~~~~~~~~~-------------~a~~~~dv~v~pS~-~Eg~~~~~lEAma~----- 381 (499)
T 2r60_A 321 LGKIIELIDNNDCRGKVSMFPLNSQQELAGCYA-------------YLASKGSVFALTSF-YEPFGLAPVEAMAS----- 381 (499)
T ss_dssp HHHHHHHHHHTTCBTTEEEEECCSHHHHHHHHH-------------HHHHTTCEEEECCS-CBCCCSHHHHHHHT-----
T ss_pred HHHHHHHHHhcCCCceEEECCCCCHHHHHHHHH-------------hcCcCCCEEEECcc-cCCCCcHHHHHHHc-----
Confidence 5566666666553 244333 3456555552 35 88876432 23446667777653
Q ss_pred CCcEEEEeCCCcHHHHHHHHHcCCceEEeCCCCHHHHHHHHHHHh
Q 026776 114 EIPVVIMSSENILARIDRCLEDGAEDFIVKPVKLSDVKRIKDYLT 158 (233)
Q Consensus 114 ~~piIvlt~~~~~~~~~~al~~Ga~dyL~KP~~~~eL~~~~~~l~ 158 (233)
.+|+|+.. .. ...+.+..|..+++..|.+.+++.+.+..+.
T Consensus 382 G~PvI~s~-~~---g~~e~v~~~~~g~l~~~~d~~~la~~i~~ll 422 (499)
T 2r60_A 382 GLPAVVTR-NG---GPAEILDGGKYGVLVDPEDPEDIARGLLKAF 422 (499)
T ss_dssp TCCEEEES-SB---HHHHHTGGGTSSEEECTTCHHHHHHHHHHHH
T ss_pred CCCEEEec-CC---CHHHHhcCCceEEEeCCCCHHHHHHHHHHHH
Confidence 67887553 32 2334566778899999999999877666554
No 300
>3ezy_A Dehydrogenase; structural genomics, unknown function, PSI-2, protein structure initiative; 2.04A {Thermotoga maritima}
Probab=46.07 E-value=1.2e+02 Score=24.84 Aligned_cols=46 Identities=22% Similarity=0.373 Sum_probs=29.6
Q ss_pred CCcEEEEeCCC--cHHHHHHHHHcCCceEEeCCC--CHHHHHHHHHHHhh
Q 026776 114 EIPVVIMSSEN--ILARIDRCLEDGAEDFIVKPV--KLSDVKRIKDYLTR 159 (233)
Q Consensus 114 ~~piIvlt~~~--~~~~~~~al~~Ga~dyL~KP~--~~~eL~~~~~~l~~ 159 (233)
.+-+|+++... ..+.+..++++|..=|+.||+ +.++..++.+...+
T Consensus 64 ~~D~V~i~tp~~~h~~~~~~al~~gk~v~~EKP~~~~~~e~~~l~~~a~~ 113 (344)
T 3ezy_A 64 NVDAVLVCSSTNTHSELVIACAKAKKHVFCEKPLSLNLADVDRMIEETKK 113 (344)
T ss_dssp TCCEEEECSCGGGHHHHHHHHHHTTCEEEEESCSCSCHHHHHHHHHHHHH
T ss_pred CCCEEEEcCCCcchHHHHHHHHhcCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 34445454433 355677889999998999994 45666666655544
No 301
>1iy9_A Spermidine synthase; rossmann fold, structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.30A {Bacillus subtilis} SCOP: c.66.1.17
Probab=45.89 E-value=60 Score=26.12 Aligned_cols=55 Identities=20% Similarity=0.134 Sum_probs=34.6
Q ss_pred CcEEEEEeCCHHHHHHHHHHHhh----c-CCEE-EEECCHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCC
Q 026776 29 EVHVLAVDDSFVDRKVIERLLTI----S-SCKV-TAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMP 95 (233)
Q Consensus 29 ~~~ILIVddd~~~~~~l~~~L~~----~-g~~v-~~a~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp 95 (233)
..+|..||-++...+..++.+.. . .-++ ....++.+.+.. ....||+|++|...|
T Consensus 99 ~~~v~~vEid~~~v~~ar~~~~~~~~~~~~~rv~v~~~D~~~~l~~------------~~~~fD~Ii~d~~~~ 159 (275)
T 1iy9_A 99 VKKATLVDIDGKVIEYSKKFLPSIAGKLDDPRVDVQVDDGFMHIAK------------SENQYDVIMVDSTEP 159 (275)
T ss_dssp CSEEEEEESCHHHHHHHHHHCHHHHTTTTSTTEEEEESCSHHHHHT------------CCSCEEEEEESCSSC
T ss_pred CceEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhh------------CCCCeeEEEECCCCC
Confidence 35788999998888888877643 1 1122 234455444332 134699999997654
No 302
>3r75_A Anthranilate/para-aminobenzoate synthases compone; ammonia channel, chorismate, type 1 glutamine amidotransfera phenazine biosynthesis, lyase; HET: CYG; 2.10A {Burkholderia SP} PDB: 3r74_A* 3r76_A*
Probab=45.87 E-value=44 Score=30.92 Aligned_cols=75 Identities=17% Similarity=0.216 Sum_probs=47.8
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHhhcCCEEEEECCHHHHHHHhhhhhhhhccCCCCCcccEEEEcC--CCCCCCH------
Q 026776 28 EEVHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDY--CMPGMTG------ 99 (233)
Q Consensus 28 ~~~~ILIVddd~~~~~~l~~~L~~~g~~v~~a~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~--~mp~~~g------ 99 (233)
...+|+|+|....+...+.+.|...|+.+........ . ....+|.||+-= .-+...+
T Consensus 445 ~Gk~IlviD~gdsf~~~l~~~l~~~G~~v~Vv~~d~~----~-----------~~~~~DgIIlsGGPg~p~d~~~p~i~~ 509 (645)
T 3r75_A 445 SGCRALIVDAEDHFTAMIAQQLSSLGLATEVCGVHDA----V-----------DLARYDVVVMGPGPGDPSDAGDPRIAR 509 (645)
T ss_dssp TTCEEEEEESSCTHHHHHHHHHHHTTCEEEEEETTCC----C-----------CGGGCSEEEECCCSSCTTCTTSHHHHH
T ss_pred CCCEEEEEECCccHHHHHHHHHHHCCCEEEEEECCCc----c-----------cccCCCEEEECCCCCChhhhhhhhHHH
Confidence 4578999999888888999999999987776643211 1 123578888732 2222223
Q ss_pred -HHHHHHHhccCCCCCCcEEEEe
Q 026776 100 -YELLKKIKDSSALREIPVVIMS 121 (233)
Q Consensus 100 -~~ll~~Lr~~~~~~~~piIvlt 121 (233)
.++++.+.+. ++||+-+.
T Consensus 510 ~~~lI~~a~~~----~iPiLGIC 528 (645)
T 3r75_A 510 LYAWLRHLIDE----GKPFMAVC 528 (645)
T ss_dssp HHHHHHHHHHH----TCCEEEET
T ss_pred HHHHHHHHHHC----CCCEEEEC
Confidence 2344444332 67998875
No 303
>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}
Probab=45.86 E-value=86 Score=22.98 Aligned_cols=109 Identities=13% Similarity=0.095 Sum_probs=59.5
Q ss_pred CCCcEEEEEeCCHHHHHHHHHHHhhc-CCEEEEECCHHHHHHHhhhhhhhhc----------cCC-CCCcccEEEEcCCC
Q 026776 27 TEEVHVLAVDDSFVDRKVIERLLTIS-SCKVTAVDSGRRALQFLGLDEEQSI----------NGF-DGLKVDLIITDYCM 94 (233)
Q Consensus 27 ~~~~~ILIVddd~~~~~~l~~~L~~~-g~~v~~a~~~~~al~~l~~~~~~~~----------~~~-~~~~~DlvllD~~m 94 (233)
....+|+|+.--. +...+...|... |+.|..++.-.+..+.+...+.... ..+ .-...|+||+-.
T Consensus 37 ~~~~~v~IiG~G~-~G~~~a~~L~~~~g~~V~vid~~~~~~~~~~~~g~~~~~gd~~~~~~l~~~~~~~~ad~vi~~~-- 113 (183)
T 3c85_A 37 PGHAQVLILGMGR-IGTGAYDELRARYGKISLGIEIREEAAQQHRSEGRNVISGDATDPDFWERILDTGHVKLVLLAM-- 113 (183)
T ss_dssp CTTCSEEEECCSH-HHHHHHHHHHHHHCSCEEEEESCHHHHHHHHHTTCCEEECCTTCHHHHHTBCSCCCCCEEEECC--
T ss_pred CCCCcEEEECCCH-HHHHHHHHHHhccCCeEEEEECCHHHHHHHHHCCCCEEEcCCCCHHHHHhccCCCCCCEEEEeC--
Confidence 3456899998654 566666677777 8988887654444444332111100 011 123578888743
Q ss_pred CCC-CHHHHHHHHhccCCCCCCcEEEEeCCCcHHHHHHHHHcCCceEEe
Q 026776 95 PGM-TGYELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIV 142 (233)
Q Consensus 95 p~~-~g~~ll~~Lr~~~~~~~~piIvlt~~~~~~~~~~al~~Ga~dyL~ 142 (233)
++. ....++..++...+ ...|++.+.. ........+.|++..+.
T Consensus 114 ~~~~~~~~~~~~~~~~~~--~~~ii~~~~~--~~~~~~l~~~G~~~vi~ 158 (183)
T 3c85_A 114 PHHQGNQTALEQLQRRNY--KGQIAAIAEY--PDQLEGLLESGVDAAFN 158 (183)
T ss_dssp SSHHHHHHHHHHHHHTTC--CSEEEEEESS--HHHHHHHHHHTCSEEEE
T ss_pred CChHHHHHHHHHHHHHCC--CCEEEEEECC--HHHHHHHHHcCCCEEEc
Confidence 322 12344556666543 5566665543 34444556778886554
No 304
>3ffs_A Inosine-5-monophosphate dehydrogenase; beta-alpha barrel, TIM fold, oxidoreductase; 3.19A {Cryptosporidium parvum}
Probab=45.76 E-value=40 Score=29.25 Aligned_cols=56 Identities=25% Similarity=0.258 Sum_probs=39.1
Q ss_pred CcccEEEEcCCCCCCC-HHHHHHHHhccCCCCCCcEEEEeCCCcHHHHHHHHHcCCceEEe
Q 026776 83 LKVDLIITDYCMPGMT-GYELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIV 142 (233)
Q Consensus 83 ~~~DlvllD~~mp~~~-g~~ll~~Lr~~~~~~~~piIvlt~~~~~~~~~~al~~Ga~dyL~ 142 (233)
..+|+|++|....... -.++++++++.. .+++|+- .-.+.+.+..+.++|+|.+..
T Consensus 155 aGvdvIvldta~G~~~~~~e~I~~ik~~~---~i~Vi~g-~V~t~e~A~~a~~aGAD~I~v 211 (400)
T 3ffs_A 155 AGVDVIVLDSAHGHSLNIIRTLKEIKSKM---NIDVIVG-NVVTEEATKELIENGADGIKV 211 (400)
T ss_dssp HTCSEEEECCSCCSBHHHHHHHHHHHTTC---CCEEEEE-EECSHHHHHHHHHTTCSEEEE
T ss_pred cCCCEEEEeCCCCCcccHHHHHHHHHhcC---CCeEEEe-ecCCHHHHHHHHHcCCCEEEE
Confidence 3589999987654322 267888888642 5677651 224567788899999999887
No 305
>3moi_A Probable dehydrogenase; structural genomics, PSI2, MCSG, protein structure initiativ midwest center for structural genomics; 2.50A {Bordetella bronchiseptica}
Probab=45.31 E-value=46 Score=28.17 Aligned_cols=46 Identities=17% Similarity=0.326 Sum_probs=29.6
Q ss_pred CCcEEEEeCCC--cHHHHHHHHHcCCceEEeCCCC--HHHHHHHHHHHhh
Q 026776 114 EIPVVIMSSEN--ILARIDRCLEDGAEDFIVKPVK--LSDVKRIKDYLTR 159 (233)
Q Consensus 114 ~~piIvlt~~~--~~~~~~~al~~Ga~dyL~KP~~--~~eL~~~~~~l~~ 159 (233)
.+-+|+++... ..+.+..|+++|..=|+.||+. .++..++++...+
T Consensus 64 ~vD~V~i~tp~~~H~~~~~~al~aGk~Vl~EKP~a~~~~e~~~l~~~a~~ 113 (387)
T 3moi_A 64 QMDAVYIASPHQFHCEHVVQASEQGLHIIVEKPLTLSRDEADRMIEAVER 113 (387)
T ss_dssp CCSEEEECSCGGGHHHHHHHHHHTTCEEEECSCCCSCHHHHHHHHHHHHH
T ss_pred CCCEEEEcCCcHHHHHHHHHHHHCCCceeeeCCccCCHHHHHHHHHHHHH
Confidence 34444444332 3566778999999999999964 5566666555544
No 306
>1thf_D HISF protein; thermophIle, TIM-barrel, histidine biosynthesis, lyase, phosphate-binding sites; 1.45A {Thermotoga maritima} SCOP: c.1.2.1 PDB: 2wjz_A 2a0n_A* 1gpw_A 1vh7_A 2rkx_A 3iio_A 3iip_A* 3iiv_A
Probab=45.30 E-value=53 Score=25.79 Aligned_cols=43 Identities=16% Similarity=0.293 Sum_probs=33.0
Q ss_pred HHHHHHHHhccCCCCCCcEEEEeCCCcHHHHHHHHHcCCceEEeCC
Q 026776 99 GYELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKP 144 (233)
Q Consensus 99 g~~ll~~Lr~~~~~~~~piIvlt~~~~~~~~~~al~~Ga~dyL~KP 144 (233)
.+++++.+++. ..+|+++-..-.+.+.+..+++.||+.++.--
T Consensus 62 ~~~~i~~i~~~---~~ipvi~~ggI~~~~~~~~~~~~Gad~V~lg~ 104 (253)
T 1thf_D 62 MLELVEKVAEQ---IDIPFTVGGGIHDFETASELILRGADKVSINT 104 (253)
T ss_dssp HHHHHHHHHTT---CCSCEEEESSCCSHHHHHHHHHTTCSEEEESH
T ss_pred cHHHHHHHHHh---CCCCEEEeCCCCCHHHHHHHHHcCCCEEEECh
Confidence 35667777753 27899987777778889999999999887643
No 307
>4gqa_A NAD binding oxidoreductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; HET: MSE; 2.42A {Klebsiella pneumoniae}
Probab=45.28 E-value=1e+02 Score=26.18 Aligned_cols=46 Identities=17% Similarity=0.259 Sum_probs=32.2
Q ss_pred CCcEEEEeCCC--cHHHHHHHHHcCCceEEeCCC--CHHHHHHHHHHHhh
Q 026776 114 EIPVVIMSSEN--ILARIDRCLEDGAEDFIVKPV--KLSDVKRIKDYLTR 159 (233)
Q Consensus 114 ~~piIvlt~~~--~~~~~~~al~~Ga~dyL~KP~--~~~eL~~~~~~l~~ 159 (233)
.+-+|+++... ..+.+..|+++|..=|+.||+ +.++..++++...+
T Consensus 96 ~vD~V~I~tp~~~H~~~~~~al~aGkhVl~EKP~a~~~~ea~~l~~~a~~ 145 (412)
T 4gqa_A 96 QVDVVDITSPNHLHYTMAMAAIAAGKHVYCEKPLAVNEQQAQEMAQAARR 145 (412)
T ss_dssp TCCEEEECSCGGGHHHHHHHHHHTTCEEEEESCSCSSHHHHHHHHHHHHH
T ss_pred CCCEEEECCCcHHHHHHHHHHHHcCCCeEeecCCcCCHHHHHHHHHHHHH
Confidence 44555554443 457788999999999999996 45666666665543
No 308
>1h5y_A HISF; histidine biosynthesis, TIM-barrel; 2.0A {Pyrobaculum aerophilum} SCOP: c.1.2.1
Probab=45.23 E-value=42 Score=26.06 Aligned_cols=55 Identities=20% Similarity=0.312 Sum_probs=37.8
Q ss_pred ccEEEE-cCCCCC---CCHHHHHHHHhccCCCCCCcEEEEeCCCcHHHHHHHHHcCCceEEe
Q 026776 85 VDLIIT-DYCMPG---MTGYELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIV 142 (233)
Q Consensus 85 ~Dlvll-D~~mp~---~~g~~ll~~Lr~~~~~~~~piIvlt~~~~~~~~~~al~~Ga~dyL~ 142 (233)
.|.|++ +....+ .-.++.++++++.. .+|+++-.+-...+.+.+++++|++.++.
T Consensus 168 ~d~i~~~~~~~~g~~~~~~~~~i~~l~~~~---~~pvia~GGi~~~~~~~~~~~~Ga~~v~v 226 (253)
T 1h5y_A 168 AGEILLTSIDRDGTGLGYDVELIRRVADSV---RIPVIASGGAGRVEHFYEAAAAGADAVLA 226 (253)
T ss_dssp CSEEEEEETTTTTTCSCCCHHHHHHHHHHC---SSCEEEESCCCSHHHHHHHHHTTCSEEEE
T ss_pred CCEEEEecccCCCCcCcCCHHHHHHHHHhc---CCCEEEeCCCCCHHHHHHHHHcCCcHHHH
Confidence 566654 443211 12467888888652 78898877766677888889999999864
No 309
>2fhp_A Methylase, putative; alpha-beta-alpha sandwich, structural genomics, PSI, protein structure initiative; HET: MSE; 1.60A {Enterococcus faecalis} SCOP: c.66.1.46
Probab=45.09 E-value=85 Score=22.68 Aligned_cols=68 Identities=22% Similarity=0.259 Sum_probs=43.4
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhcCC--EE-EEECCHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCCCCCHHHHHHHH
Q 026776 30 VHVLAVDDSFVDRKVIERLLTISSC--KV-TAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKKI 106 (233)
Q Consensus 30 ~~ILIVddd~~~~~~l~~~L~~~g~--~v-~~a~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp~~~g~~ll~~L 106 (233)
.+|..+|-++...+..+..+...+. .+ ....+..+.+..+.. ....+|+|++|...-..+..++++.+
T Consensus 68 ~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~---------~~~~fD~i~~~~~~~~~~~~~~~~~l 138 (187)
T 2fhp_A 68 DKSICIEKNFAALKVIKENIAITKEPEKFEVRKMDANRALEQFYE---------EKLQFDLVLLDPPYAKQEIVSQLEKM 138 (187)
T ss_dssp SEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHH---------TTCCEEEEEECCCGGGCCHHHHHHHH
T ss_pred CEEEEEECCHHHHHHHHHHHHHhCCCcceEEEECcHHHHHHHHHh---------cCCCCCEEEECCCCCchhHHHHHHHH
Confidence 5799999999888888888876653 23 334565554432210 13469999998543334555666666
No 310
>3lkb_A Probable branched-chain amino acid ABC transporter, amino acid binding protein; branched amino acid, PSI-II, NYSGXRC, structural genomics; 2.40A {Thermus thermophilus}
Probab=45.01 E-value=73 Score=26.36 Aligned_cols=70 Identities=9% Similarity=-0.003 Sum_probs=40.9
Q ss_pred HHHHHHHhhcCCEEEEE-------CCHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCCCCCHHHHHHHHhccCCCCCC
Q 026776 43 KVIERLLTISSCKVTAV-------DSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKKIKDSSALREI 115 (233)
Q Consensus 43 ~~l~~~L~~~g~~v~~a-------~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp~~~g~~ll~~Lr~~~~~~~~ 115 (233)
+.+++.+++.|..+... .+....+..+ ....+|+|++.. .+.+...+++.+++... ..
T Consensus 161 ~~~~~~l~~~G~~v~~~~~~~~~~~d~~~~~~~l-----------~~~~~dav~~~~--~~~~a~~~~~~~~~~g~--~~ 225 (392)
T 3lkb_A 161 EDARKAARELGLQIVDVQEVGSGNLDNTALLKRF-----------EQAGVEYVVHQN--VAGPVANILKDAKRLGL--KM 225 (392)
T ss_dssp HHHHHHHHHHTCEEEEEEECCTTCCCCHHHHHHH-----------HHTTCCEEEEES--CHHHHHHHHHHHHHTTC--CC
T ss_pred HHHHHHHHHcCCeEEEEEeeCCCCcCHHHHHHHH-----------HhcCCCEEEEec--CcchHHHHHHHHHHcCC--Cc
Confidence 34566667777765431 2344455554 234689999743 34456778888888765 66
Q ss_pred cEEEEeCCCcHH
Q 026776 116 PVVIMSSENILA 127 (233)
Q Consensus 116 piIvlt~~~~~~ 127 (233)
|++......+..
T Consensus 226 ~~~~~~~~~~~~ 237 (392)
T 3lkb_A 226 RHLGAHYTGGPD 237 (392)
T ss_dssp EEEECGGGCSHH
T ss_pred eEEEecCcccHH
Confidence 765543333333
No 311
>2rhc_B Actinorhodin polyketide ketoreductase; oxidoreductase, combinatorial biosynthesis, short chain dehydrogenase/reductase; HET: NAP EMO; 2.10A {Streptomyces coelicolor} SCOP: c.2.1.2 PDB: 2rh4_A* 1w4z_A* 3csd_B* 3qrw_A* 3ri3_B* 2rhr_B* 1x7g_A* 1x7h_A* 1xr3_A*
Probab=44.90 E-value=87 Score=24.85 Aligned_cols=34 Identities=15% Similarity=-0.000 Sum_probs=27.7
Q ss_pred CCCcEEEEEeCCHHHHHHHHHHHhhcCCEEEEEC
Q 026776 27 TEEVHVLAVDDSFVDRKVIERLLTISSCKVTAVD 60 (233)
Q Consensus 27 ~~~~~ILIVddd~~~~~~l~~~L~~~g~~v~~a~ 60 (233)
.+..++||..-...+...+...|.+.|+.|....
T Consensus 20 l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~ 53 (277)
T 2rhc_B 20 QDSEVALVTGATSGIGLEIARRLGKEGLRVFVCA 53 (277)
T ss_dssp TTSCEEEEETCSSHHHHHHHHHHHHTTCEEEEEE
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEe
Confidence 4556789999888888899888888899887654
No 312
>3sc6_A DTDP-4-dehydrorhamnose reductase; RFBD, structural genomics, infectious diseases, bacillus anthracis STR. AMES, rhamnose biosynthetic pathway; HET: NAP; 2.65A {Bacillus anthracis} SCOP: c.2.1.0
Probab=44.73 E-value=56 Score=25.77 Aligned_cols=31 Identities=13% Similarity=0.062 Sum_probs=26.9
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhcCCEEEEEC
Q 026776 30 VHVLAVDDSFVDRKVIERLLTISSCKVTAVD 60 (233)
Q Consensus 30 ~~ILIVddd~~~~~~l~~~L~~~g~~v~~a~ 60 (233)
++|||..-.-.+...+.+.|...|++|....
T Consensus 6 m~ilVtGatG~iG~~l~~~L~~~g~~V~~~~ 36 (287)
T 3sc6_A 6 ERVIITGANGQLGKQLQEELNPEEYDIYPFD 36 (287)
T ss_dssp EEEEEESTTSHHHHHHHHHSCTTTEEEEEEC
T ss_pred eEEEEECCCCHHHHHHHHHHHhCCCEEEEec
Confidence 6899999998889999888888899988764
No 313
>1vzw_A Phosphoribosyl isomerase A; histidine biosynthesis, tryptophan biosynthesis; 1.8A {Streptomyces coelicolor} SCOP: c.1.2.1 PDB: 2vep_A 2x30_A
Probab=44.66 E-value=1.1e+02 Score=23.83 Aligned_cols=56 Identities=27% Similarity=0.333 Sum_probs=38.1
Q ss_pred ccc-EEEEcCCCCC---CCHHHHHHHHhccCCCCCCcEEEEeCCCcHHHHHHHHHc---CCceEEe
Q 026776 84 KVD-LIITDYCMPG---MTGYELLKKIKDSSALREIPVVIMSSENILARIDRCLED---GAEDFIV 142 (233)
Q Consensus 84 ~~D-lvllD~~mp~---~~g~~ll~~Lr~~~~~~~~piIvlt~~~~~~~~~~al~~---Ga~dyL~ 142 (233)
.+| +++.+..-.+ .-.+++++++++.. .+|||+..+-.+.+.+.++++. |+++++.
T Consensus 159 G~~~i~~~~~~~~~~~~g~~~~~~~~i~~~~---~ipvia~GGI~~~~d~~~~~~~~~~Gadgv~v 221 (244)
T 1vzw_A 159 GCARYVVTDIAKDGTLQGPNLELLKNVCAAT---DRPVVASGGVSSLDDLRAIAGLVPAGVEGAIV 221 (244)
T ss_dssp TCCCEEEEEC-------CCCHHHHHHHHHTC---SSCEEEESCCCSHHHHHHHHTTGGGTEEEEEE
T ss_pred CCCEEEEeccCcccccCCCCHHHHHHHHHhc---CCCEEEECCCCCHHHHHHHHhhccCCCceeee
Confidence 356 4445543211 12478889988643 6899988777777888999998 9998864
No 314
>3tdn_A FLR symmetric alpha-beta TIM barrel; symmetric superfold, de novo protein; 1.40A {Synthetic construct} PDB: 3og3_A 3tdm_A
Probab=44.60 E-value=55 Score=25.76 Aligned_cols=42 Identities=10% Similarity=0.313 Sum_probs=34.0
Q ss_pred HHHHHHHHhccCCCCCCcEEEEeCCCcHHHHHHHHHcCCceEEeC
Q 026776 99 GYELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVK 143 (233)
Q Consensus 99 g~~ll~~Lr~~~~~~~~piIvlt~~~~~~~~~~al~~Ga~dyL~K 143 (233)
.+++++.+++.. .+|+++-..-.+.+.+.++++.|++..+.-
T Consensus 67 ~~~~i~~i~~~~---~ipvi~~Ggi~~~~~~~~~l~~Gad~V~ig 108 (247)
T 3tdn_A 67 DTEMIRFVRPLT---TLPIIASGGAGKMEHFLEAFLRGADKVSIN 108 (247)
T ss_dssp CHHHHHHHGGGC---CSCEEEESCCCSHHHHHHHHHTTCSEECCS
T ss_pred cHHHHHHHHHhC---CCCEEEeCCCCCHHHHHHHHHcCCCeeehh
Confidence 368889998753 789998877778888999999999887653
No 315
>1ujp_A Tryptophan synthase alpha chain; riken structural genomics/P initiative, RSGI, structural genomics, lyase; HET: CIT; 1.34A {Thermus thermophilus} SCOP: c.1.2.4 PDB: 1wxj_A*
Probab=44.57 E-value=68 Score=26.02 Aligned_cols=40 Identities=20% Similarity=0.286 Sum_probs=30.1
Q ss_pred HHHHHHHhccCCCCCCcEEEEeCCCcHHHHHHHHHcCCceEEeCC
Q 026776 100 YELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKP 144 (233)
Q Consensus 100 ~~ll~~Lr~~~~~~~~piIvlt~~~~~~~~~~al~~Ga~dyL~KP 144 (233)
.++++++|+.. ++|+++=.+-.+.+.+.++ .|||+++.=.
T Consensus 191 ~~~v~~vr~~~---~~Pv~vGfGI~t~e~a~~~--~~ADgVIVGS 230 (271)
T 1ujp_A 191 KDLVRRIKART---ALPVAVGFGVSGKATAAQA--AVADGVVVGS 230 (271)
T ss_dssp HHHHHHHHTTC---CSCEEEESCCCSHHHHHHH--TTSSEEEECH
T ss_pred HHHHHHHHhhc---CCCEEEEcCCCCHHHHHHh--cCCCEEEECh
Confidence 47888888752 7888876666667777775 9999998753
No 316
>4eyg_A Twin-arginine translocation pathway signal; PSI-biology, MCSG, midwest center for structural genomics, transporter; HET: VNL; 1.86A {Rhodopseudomonas palustris} PDB: 4ey3_A* 3t0n_A* 4eyk_A*
Probab=44.34 E-value=1e+02 Score=25.04 Aligned_cols=67 Identities=16% Similarity=0.149 Sum_probs=41.7
Q ss_pred HHHHHHHHhhcCCEEEE---E----CCHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCCCCCHHHHHHHHhccCCCCC
Q 026776 42 RKVIERLLTISSCKVTA---V----DSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKKIKDSSALRE 114 (233)
Q Consensus 42 ~~~l~~~L~~~g~~v~~---a----~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp~~~g~~ll~~Lr~~~~~~~ 114 (233)
.+.+.+.++..|..+.. + .+....+..+ ....+|+|++.. .+.+...+++.+++......
T Consensus 156 ~~~~~~~l~~~g~~v~~~~~~~~~~~d~~~~~~~l-----------~~~~~d~v~~~~--~~~~a~~~~~~~~~~g~~~~ 222 (368)
T 4eyg_A 156 LAFFKERFTAGGGEIVEEIKVPLANPDFAPFLQRM-----------KDAKPDAMFVFV--PAGQGGNFMKQFAERGLDKS 222 (368)
T ss_dssp HHHHHHHHHHTTCEEEEEEEECSSSCCCHHHHHHH-----------HHHCCSEEEEEC--CTTCHHHHHHHHHHTTGGGT
T ss_pred HHHHHHHHHHcCCEEEEEEeCCCCCCcHHHHHHHH-----------HhcCCCEEEEec--cchHHHHHHHHHHHcCCCcC
Confidence 34566667777876543 2 2455566655 234689999854 34488899999988654222
Q ss_pred -CcEEEEe
Q 026776 115 -IPVVIMS 121 (233)
Q Consensus 115 -~piIvlt 121 (233)
++++...
T Consensus 223 ~v~~~~~~ 230 (368)
T 4eyg_A 223 GIKVIGPG 230 (368)
T ss_dssp TCEEEEET
T ss_pred CceEEecC
Confidence 5665543
No 317
>3evn_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics; 2.00A {Streptococcus agalactiae serogroup V}
Probab=43.93 E-value=46 Score=27.37 Aligned_cols=46 Identities=13% Similarity=0.199 Sum_probs=31.4
Q ss_pred CCcEEEEeCC--CcHHHHHHHHHcCCceEEeCCCC--HHHHHHHHHHHhh
Q 026776 114 EIPVVIMSSE--NILARIDRCLEDGAEDFIVKPVK--LSDVKRIKDYLTR 159 (233)
Q Consensus 114 ~~piIvlt~~--~~~~~~~~al~~Ga~dyL~KP~~--~~eL~~~~~~l~~ 159 (233)
.+-+|+++.. ...+.+..++++|..=|+.||+. .++..++++...+
T Consensus 67 ~~D~V~i~tp~~~h~~~~~~al~aGk~Vl~EKP~a~~~~e~~~l~~~a~~ 116 (329)
T 3evn_A 67 SIDVIYVATINQDHYKVAKAALLAGKHVLVEKPFTLTYDQANELFALAES 116 (329)
T ss_dssp TCCEEEECSCGGGHHHHHHHHHHTTCEEEEESSCCSSHHHHHHHHHHHHH
T ss_pred CCCEEEECCCcHHHHHHHHHHHHCCCeEEEccCCcCCHHHHHHHHHHHHH
Confidence 4445555443 34566788999999999999964 6666666666554
No 318
>1vhc_A Putative KHG/KDPG aldolase; structural genomics, unknown function; HET: MSE; 1.89A {Haemophilus influenzae} SCOP: c.1.10.1
Probab=43.89 E-value=86 Score=24.60 Aligned_cols=57 Identities=4% Similarity=0.082 Sum_probs=35.9
Q ss_pred ccEEEEcCCCCCCCHHHHHHHHhccCCCCCCcEEEEeCCCcHHHHHHHHHcCCceEEeCCCC
Q 026776 85 VDLIITDYCMPGMTGYELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVK 146 (233)
Q Consensus 85 ~DlvllD~~mp~~~g~~ll~~Lr~~~~~~~~piIvlt~~~~~~~~~~al~~Ga~dyL~KP~~ 146 (233)
.++|=+. +...++.+.++.+++..+ .+.+-.=+ --+.+....|+++||+.++.--.+
T Consensus 43 v~~iel~--~k~~~~~~~i~~l~~~~~--~l~vgaGt-vl~~d~~~~A~~aGAd~v~~p~~d 99 (224)
T 1vhc_A 43 LSVAEIT--FRSEAAADAIRLLRANRP--DFLIAAGT-VLTAEQVVLAKSSGADFVVTPGLN 99 (224)
T ss_dssp CCEEEEE--TTSTTHHHHHHHHHHHCT--TCEEEEES-CCSHHHHHHHHHHTCSEEECSSCC
T ss_pred CCEEEEe--ccCchHHHHHHHHHHhCc--CcEEeeCc-EeeHHHHHHHHHCCCCEEEECCCC
Confidence 5555554 445678899998887643 33322222 235678889999999877554343
No 319
>3jr2_A Hexulose-6-phosphate synthase SGBH; 3-keto-L-gulonate-6-phosphate decarboxylase, ULAD, niaid,CSG bound, biosynthetic protein; HET: MSE; 1.80A {Vibrio cholerae} SCOP: c.1.2.0 PDB: 3ieb_A*
Probab=43.85 E-value=12 Score=29.31 Aligned_cols=20 Identities=25% Similarity=0.081 Sum_probs=9.4
Q ss_pred HcCCceE--EeCCCCHHHHHHH
Q 026776 134 EDGAEDF--IVKPVKLSDVKRI 153 (233)
Q Consensus 134 ~~Ga~dy--L~KP~~~~eL~~~ 153 (233)
+.|..-. +..|.+++++..+
T Consensus 107 ~~g~~~~~d~l~~~T~~~~~~~ 128 (218)
T 3jr2_A 107 ELNGEIQIEIYGNWTMQDAKAW 128 (218)
T ss_dssp HHTCEEEEECCSSCCHHHHHHH
T ss_pred HhCCccceeeeecCCHHHHHHH
Confidence 4455443 4455555444433
No 320
>1qv9_A F420-dependent methylenetetrahydromethanopterin dehydrogenase; monomer: alpha/beta domain, helix bundle, trimer of dimers, oxidoreductase; HET: MSE; 1.54A {Methanopyrus kandleri} SCOP: c.127.1.1 PDB: 1u6i_A 1u6j_A 1u6k_A* 3iqe_A* 3iqf_A* 3iqz_A*
Probab=43.68 E-value=31 Score=27.82 Aligned_cols=61 Identities=18% Similarity=0.272 Sum_probs=42.9
Q ss_pred CCcccEEEEcCCCCCCCHHHHHHHHhccCCCCCCcEEEEeCCCcHHHHHHHHHcCCceEEeCCCC
Q 026776 82 GLKVDLIITDYCMPGMTGYELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVK 146 (233)
Q Consensus 82 ~~~~DlvllD~~mp~~~g~~ll~~Lr~~~~~~~~piIvlt~~~~~~~~~~al~~Ga~dyL~KP~~ 146 (233)
.+.||++|+=---|..-|-.-.+++-.. ..+|.|+++...... ..++++..-.+|+.-+.+
T Consensus 62 ~~~pDfvI~isPN~a~PGP~~ARE~l~~---~~iP~IvI~D~p~~K-~kd~l~~~g~GYIivk~D 122 (283)
T 1qv9_A 62 DFEPDFIVYGGPNPAAPGPSKAREMLAD---SEYPAVIIGDAPGLK-VKDEMEEQGLGYILVKPD 122 (283)
T ss_dssp HHCCSEEEEECSCTTSHHHHHHHHHHHT---SSSCEEEEEEGGGGG-GHHHHHHTTCEEEEETTS
T ss_pred hcCCCEEEEECCCCCCCCchHHHHHHHh---CCCCEEEEcCCcchh-hHHHHHhcCCcEEEEecC
Confidence 4579988886655667787777877643 288999998876555 446777766777665544
No 321
>3rot_A ABC sugar transporter, periplasmic sugar binding; nysgrc, PSI-biology, structural genomics; 1.91A {Legionella pneumophila subsp}
Probab=43.52 E-value=81 Score=24.95 Aligned_cols=80 Identities=10% Similarity=0.003 Sum_probs=41.5
Q ss_pred CcEEEEEeC---CHHHH---HHHHHHHhhcCCEEEEEC-----CHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCCCC
Q 026776 29 EVHVLAVDD---SFVDR---KVIERLLTISSCKVTAVD-----SGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGM 97 (233)
Q Consensus 29 ~~~ILIVdd---d~~~~---~~l~~~L~~~g~~v~~a~-----~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp~~ 97 (233)
+.+|.++-. ++.+. ..+++.+++.||.+.... +.+...+.+.. +....+|.||+-..-+.
T Consensus 3 ~~~Igvi~~~~~~~~~~~~~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~i~~--------l~~~~vdgiii~~~~~~- 73 (297)
T 3rot_A 3 RDKYYLITHGSQDPYWTSLFQGAKKAAEELKVDLQILAPPGANDVPKQVQFIES--------ALATYPSGIATTIPSDT- 73 (297)
T ss_dssp CCEEEEECSCCCSHHHHHHHHHHHHHHHHHTCEEEEECCSSSCCHHHHHHHHHH--------HHHTCCSEEEECCCCSS-
T ss_pred eEEEEEEecCCCCchHHHHHHHHHHHHHHhCcEEEEECCCCcCCHHHHHHHHHH--------HHHcCCCEEEEeCCCHH-
Confidence 345555432 44443 345555677899887765 22322222211 02346898887432221
Q ss_pred CHHHHHHHHhccCCCCCCcEEEEe
Q 026776 98 TGYELLKKIKDSSALREIPVVIMS 121 (233)
Q Consensus 98 ~g~~ll~~Lr~~~~~~~~piIvlt 121 (233)
.....++.+++. .+|+|++.
T Consensus 74 ~~~~~~~~~~~~----giPvV~~~ 93 (297)
T 3rot_A 74 AFSKSLQRANKL----NIPVIAVD 93 (297)
T ss_dssp TTHHHHHHHHHH----TCCEEEES
T ss_pred HHHHHHHHHHHC----CCCEEEEc
Confidence 124566777654 66777764
No 322
>3mz0_A Inositol 2-dehydrogenase/D-chiro-inositol 3-dehyd; MYO-inositol dehydrogenase, bsidh, oxidoreductase; HET: MSE PGE; 1.54A {Bacillus subtilis} PDB: 3nt2_A* 3nt4_A* 3nt5_A* 3nto_A* 3ntq_A* 3ntr_A*
Probab=43.47 E-value=1.4e+02 Score=24.58 Aligned_cols=45 Identities=16% Similarity=0.183 Sum_probs=29.0
Q ss_pred CcEEEEeCC--CcHHHHHHHHHcCCceEEeCCCC--HHHHHHHHHHHhh
Q 026776 115 IPVVIMSSE--NILARIDRCLEDGAEDFIVKPVK--LSDVKRIKDYLTR 159 (233)
Q Consensus 115 ~piIvlt~~--~~~~~~~~al~~Ga~dyL~KP~~--~~eL~~~~~~l~~ 159 (233)
+-+|+++.. ...+.+..++++|..=|+.||+. .++..++++...+
T Consensus 67 ~D~V~i~tp~~~h~~~~~~al~~Gk~vl~EKP~a~~~~e~~~l~~~a~~ 115 (344)
T 3mz0_A 67 VDAVLVTSWGPAHESSVLKAIKAQKYVFCEKPLATTAEGCMRIVEEEIK 115 (344)
T ss_dssp CCEEEECSCGGGHHHHHHHHHHTTCEEEECSCSCSSHHHHHHHHHHHHH
T ss_pred CCEEEECCCchhHHHHHHHHHHCCCcEEEcCCCCCCHHHHHHHHHHHHH
Confidence 444444433 24566778889998888999954 5566666655544
No 323
>1jcn_A Inosine monophosphate dehydrogenase I; IMPD, IMPDH, guanine nucleotide synthesis, oxidoreductase; HET: CPR; 2.50A {Homo sapiens} SCOP: c.1.5.1 d.37.1.1 PDB: 1jr1_A* 1nf7_A* 1b3o_A* 1nfb_A*
Probab=43.46 E-value=63 Score=28.69 Aligned_cols=57 Identities=18% Similarity=0.208 Sum_probs=41.2
Q ss_pred CcccEEEEcCCCCCCCH-HHHHHHHhccCCCCCCcEEEEeCCCcHHHHHHHHHcCCceEEe
Q 026776 83 LKVDLIITDYCMPGMTG-YELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIV 142 (233)
Q Consensus 83 ~~~DlvllD~~mp~~~g-~~ll~~Lr~~~~~~~~piIvlt~~~~~~~~~~al~~Ga~dyL~ 142 (233)
..+|+|.+|........ +++++++++..+ .+|+++-.- ...+.+..+.++|++.+..
T Consensus 266 aG~d~v~i~~~~G~~~~~~~~i~~i~~~~~--~~pvi~~~v-~t~~~a~~l~~aGad~I~v 323 (514)
T 1jcn_A 266 AGVDVIVLDSSQGNSVYQIAMVHYIKQKYP--HLQVIGGNV-VTAAQAKNLIDAGVDGLRV 323 (514)
T ss_dssp TTCSEEEECCSCCCSHHHHHHHHHHHHHCT--TCEEEEEEE-CSHHHHHHHHHHTCSEEEE
T ss_pred cCCCEEEeeccCCcchhHHHHHHHHHHhCC--CCceEeccc-chHHHHHHHHHcCCCEEEE
Confidence 45899999887654433 588999988653 678876322 4567788899999998765
No 324
>4adt_A Pyridoxine biosynthetic enzyme PDX1 homologue, PU; transferase, pyridoxal 5-phosphate biosynthesis; 2.42A {Plasmodium berghei} PDB: 4adu_A* 4ads_A
Probab=43.34 E-value=81 Score=26.04 Aligned_cols=40 Identities=20% Similarity=0.355 Sum_probs=29.3
Q ss_pred HHHHHHHhccCCCCCCcEEEEeC--CCcHHHHHHHHHcCCceEEe
Q 026776 100 YELLKKIKDSSALREIPVVIMSS--ENILARIDRCLEDGAEDFIV 142 (233)
Q Consensus 100 ~~ll~~Lr~~~~~~~~piIvlt~--~~~~~~~~~al~~Ga~dyL~ 142 (233)
+++++++++.. .+|+++++. -.+.+.+..++++|++.++.
T Consensus 196 ~~ll~~i~~~~---~iPVivvA~GGI~t~~dv~~~~~~GAdgVlV 237 (297)
T 4adt_A 196 IDLILLTRKLK---RLPVVNFAAGGIATPADAAMCMQLGMDGVFV 237 (297)
T ss_dssp HHHHHHHHHHT---SCSSEEEEESCCCSHHHHHHHHHTTCSCEEE
T ss_pred HHHHHHHHHhc---CCCeEEEecCCCCCHHHHHHHHHcCCCEEEE
Confidence 56777877643 567774433 34688889999999999976
No 325
>2d00_A V-type ATP synthase subunit F; V-ATPase, CHEY, FRET, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.149.1.1 PDB: 3a5c_H* 3a5d_H 3j0j_H*
Probab=43.27 E-value=79 Score=21.83 Aligned_cols=81 Identities=12% Similarity=0.122 Sum_probs=50.4
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHhhcCCEEEEECCHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCCCCCHHHHHHHHh
Q 026776 28 EEVHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKKIK 107 (233)
Q Consensus 28 ~~~~ILIVddd~~~~~~l~~~L~~~g~~v~~a~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp~~~g~~ll~~Lr 107 (233)
..++|.+|.| ...... |+-.|+++..+.+.+++.+.+..-. ....+.+|++.-.+-. .--+.+..++
T Consensus 2 ~~mkiaVIgD-~dtv~G----FrLaGi~~~~v~~~ee~~~~~~~l~-------~~~digIIlIte~~a~-~i~~~i~~~~ 68 (109)
T 2d00_A 2 VPVRMAVIAD-PETAQG----FRLAGLEGYGASSAEEAQSLLETLV-------ERGGYALVAVDEALLP-DPERAVERLM 68 (109)
T ss_dssp CCCCEEEEEC-HHHHHH----HHHTTSEEEECSSHHHHHHHHHHHH-------HHCCCSEEEEETTTCS-CHHHHHHHHT
T ss_pred CccEEEEEeC-HHHHHH----HHHcCCeEEEeCCHHHHHHHHHHHh-------hCCCeEEEEEeHHHHH-hhHHHHHHHH
Confidence 4678999999 433333 3456788888888887766654211 2236889999876655 3334556665
Q ss_pred ccCCCCCCcEEEEeCCC
Q 026776 108 DSSALREIPVVIMSSEN 124 (233)
Q Consensus 108 ~~~~~~~~piIvlt~~~ 124 (233)
.. ...|+|+.-...
T Consensus 69 ~~---~~~P~Il~IPs~ 82 (109)
T 2d00_A 69 RG---RDLPVLLPIAGL 82 (109)
T ss_dssp TC---CCCCEEEEESCG
T ss_pred hC---CCCeEEEEECCC
Confidence 32 256777765544
No 326
>1ka9_F Imidazole glycerol phosphtate synthase; riken structural genomics/proteomics initiative, RSGI, structural genomics, transferase; 2.30A {Thermus thermophilus} SCOP: c.1.2.1
Probab=43.07 E-value=39 Score=26.59 Aligned_cols=51 Identities=16% Similarity=0.355 Sum_probs=38.9
Q ss_pred HHHHHHHhccCCCCCCcEEEEeCCCcHHHHHHHHHcCCceEEe------CCCCHHHHHHH
Q 026776 100 YELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIV------KPVKLSDVKRI 153 (233)
Q Consensus 100 ~~ll~~Lr~~~~~~~~piIvlt~~~~~~~~~~al~~Ga~dyL~------KP~~~~eL~~~ 153 (233)
+++++++++.. .+|+|+..+-.+.+.+.++++.|+++++. .++++.++.+.
T Consensus 185 ~~~i~~l~~~~---~ipvia~GGI~~~~d~~~~~~~Gadgv~vgsal~~~~~~~~~~~~~ 241 (252)
T 1ka9_F 185 LRLTRMVAEAV---GVPVIASGGAGRMEHFLEAFQAGAEAALAASVFHFGEIPIPKLKRY 241 (252)
T ss_dssp HHHHHHHHHHC---SSCEEEESCCCSHHHHHHHHHTTCSEEEESHHHHTTSSCHHHHHHH
T ss_pred HHHHHHHHHHc---CCCEEEeCCCCCHHHHHHHHHCCCHHHHHHHHHHcCCCCHHHHHHH
Confidence 88999998753 78999888777778888889999999865 34565555443
No 327
>3sr7_A Isopentenyl-diphosphate delta-isomerase; isopentenyl pyrophosphate isomerase, TIM-barrel; 2.04A {Streptococcus mutans}
Probab=42.86 E-value=1.6e+02 Score=25.08 Aligned_cols=42 Identities=12% Similarity=0.066 Sum_probs=31.3
Q ss_pred HHHHHHHhccCCCCCCcEEEEeCCCcHHHHHHHHHcCCceEEeC
Q 026776 100 YELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVK 143 (233)
Q Consensus 100 ~~ll~~Lr~~~~~~~~piIvlt~~~~~~~~~~al~~Ga~dyL~K 143 (233)
.+.+..++.... .+|||+-.+-.+..++.+++.+||+.+..-
T Consensus 266 ~~~L~~v~~~~~--~ipvia~GGI~~g~Dv~KaLalGAdaV~ig 307 (365)
T 3sr7_A 266 AQVLLNAQPLMD--KVEILASGGIRHPLDIIKALVLGAKAVGLS 307 (365)
T ss_dssp HHHHHHHGGGTT--TSEEEECSSCCSHHHHHHHHHHTCSEEEES
T ss_pred HHHHHHHHHhcC--CCeEEEeCCCCCHHHHHHHHHcCCCEEEEC
Confidence 455556655433 688887777778899999999999998654
No 328
>4af0_A Inosine-5'-monophosphate dehydrogenase; oxidoreductase, GTP biosynthesis, drug resistance; HET: MOA IMP; 2.20A {Cryptococcus neoformans} PDB: 4af0_B*
Probab=42.61 E-value=45 Score=30.23 Aligned_cols=56 Identities=18% Similarity=0.261 Sum_probs=40.7
Q ss_pred CcccEEEEcCCCCCCC-HHHHHHHHhccCCCCCCcEEEEeCCCcHHHHHHHHHcCCceEE
Q 026776 83 LKVDLIITDYCMPGMT-GYELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFI 141 (233)
Q Consensus 83 ~~~DlvllD~~mp~~~-g~~ll~~Lr~~~~~~~~piIvlt~~~~~~~~~~al~~Ga~dyL 141 (233)
...|+|++|..-.... -++++++||+..+ .++||+ ..-.+.+.+...+++|||.+.
T Consensus 292 AGvD~iviD~ahGhs~~v~~~i~~ik~~~p--~~~via-GNVaT~e~a~~Li~aGAD~vk 348 (556)
T 4af0_A 292 AGLDVVVLDSSQGNSVYQIEFIKWIKQTYP--KIDVIA-GNVVTREQAAQLIAAGADGLR 348 (556)
T ss_dssp TTCCEEEECCSCCCSHHHHHHHHHHHHHCT--TSEEEE-EEECSHHHHHHHHHHTCSEEE
T ss_pred cCCcEEEEeccccccHHHHHHHHHHHhhCC--cceEEe-ccccCHHHHHHHHHcCCCEEe
Confidence 3579999998765433 4789999998764 666654 333456777788899999874
No 329
>2jjm_A Glycosyl transferase, group 1 family protein; anthrax, nucleotide, carbohydrate; 3.10A {Bacillus anthracis} PDB: 3mbo_A*
Probab=42.55 E-value=54 Score=27.19 Aligned_cols=65 Identities=15% Similarity=0.189 Sum_probs=42.3
Q ss_pred ccEEEEcCCCCCCCHHHHHHHHhccCCCCCCcEEEEeCCCcHHHHHHHHHcCCceEEeCCCCHHHHHHHHHHHhh
Q 026776 85 VDLIITDYCMPGMTGYELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVKLSDVKRIKDYLTR 159 (233)
Q Consensus 85 ~DlvllD~~mp~~~g~~ll~~Lr~~~~~~~~piIvlt~~~~~~~~~~al~~Ga~dyL~KP~~~~eL~~~~~~l~~ 159 (233)
.|++++-.. .+.-|..+++.+.. .+|+|+...... .+.+..|-.+++..|.+.+++.+.+..+..
T Consensus 285 adv~v~ps~-~e~~~~~~~EAma~-----G~PvI~~~~~~~----~e~v~~~~~g~~~~~~d~~~la~~i~~l~~ 349 (394)
T 2jjm_A 285 SDLMLLLSE-KESFGLVLLEAMAC-----GVPCIGTRVGGI----PEVIQHGDTGYLCEVGDTTGVADQAIQLLK 349 (394)
T ss_dssp CSEEEECCS-CCSCCHHHHHHHHT-----TCCEEEECCTTS----TTTCCBTTTEEEECTTCHHHHHHHHHHHHH
T ss_pred CCEEEeccc-cCCCchHHHHHHhc-----CCCEEEecCCCh----HHHhhcCCceEEeCCCCHHHHHHHHHHHHc
Confidence 577776433 34446677777753 678776543222 233455778999999999999777666543
No 330
>2gk3_A Putative cytoplasmic protein; STM3548, structural genomics, PSI, P structure initiative; 2.25A {Salmonella typhimurium} SCOP: c.23.16.9
Probab=42.50 E-value=24 Score=28.33 Aligned_cols=63 Identities=10% Similarity=0.042 Sum_probs=35.6
Q ss_pred HHHHHHHhhcCCEEEEECCHHHHH-------HHhhhhhhhhccCCCCCcccEEEEcC-CC---CC-----------CCHH
Q 026776 43 KVIERLLTISSCKVTAVDSGRRAL-------QFLGLDEEQSINGFDGLKVDLIITDY-CM---PG-----------MTGY 100 (233)
Q Consensus 43 ~~l~~~L~~~g~~v~~a~~~~~al-------~~l~~~~~~~~~~~~~~~~DlvllD~-~m---p~-----------~~g~ 100 (233)
..+.+.|+..+++|..... .+.. +.+ ..||+||++- .- .. .+-.
T Consensus 43 ~~l~~aL~~~~~~v~~~~~-~~~~~~fp~~~~~L-------------~~yDvIIl~~~~~~~l~~~~~~~~~~~~~~~~~ 108 (256)
T 2gk3_A 43 TWLLECLRKGGVDIDYMPA-HTVQIAFPESIDEL-------------NRYDVIVISDIGSNTFLLQNETFYQLKIKPNAL 108 (256)
T ss_dssp HHHHHHHHHTTCEEEEECH-HHHHHCCCCSHHHH-------------HTCSEEEEESCCHHHHHSCHHHHTTCCCCCCHH
T ss_pred HHHHHHHHhcCceEEEEec-ccchhhCCcChhHH-------------hcCCEEEEeCCchhhcccccccccccccChHHH
Confidence 3456666677999888742 1111 222 2589988863 21 10 3455
Q ss_pred HHHHHHhccCCCCCCcEEEEeCC
Q 026776 101 ELLKKIKDSSALREIPVVIMSSE 123 (233)
Q Consensus 101 ~ll~~Lr~~~~~~~~piIvlt~~ 123 (233)
+.++..... ...+|++.+.
T Consensus 109 ~~l~~~V~~----GGgll~igG~ 127 (256)
T 2gk3_A 109 ESIKEYVKN----GGGLLMIGGY 127 (256)
T ss_dssp HHHHHHHHT----TCEEEEECST
T ss_pred HHHHHHHHh----CCEEEEECCh
Confidence 666666554 4567777654
No 331
>3qja_A IGPS, indole-3-glycerol phosphate synthase; structural genomics, T structural genomics consortium, TBSGC, lyase; 1.29A {Mycobacterium tuberculosis} PDB: 3t40_A* 3t44_A* 3t55_A* 3t78_A* 4fb7_A*
Probab=42.37 E-value=91 Score=25.28 Aligned_cols=56 Identities=18% Similarity=0.196 Sum_probs=37.9
Q ss_pred HHHHHHHhccCCCCCCcEEEEeCCCcHHHHHHHHHcCCceEEe--CCCCHHHHHHHHHHHh
Q 026776 100 YELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIV--KPVKLSDVKRIKDYLT 158 (233)
Q Consensus 100 ~~ll~~Lr~~~~~~~~piIvlt~~~~~~~~~~al~~Ga~dyL~--KP~~~~eL~~~~~~l~ 158 (233)
++.++.+|+.- .+|++.-----+...+..+...|||.+++ .-++.+++..++....
T Consensus 102 ~~~l~~ir~~v---~lPvl~kdfiid~~qv~~A~~~GAD~VlLi~a~l~~~~l~~l~~~a~ 159 (272)
T 3qja_A 102 LDDLDAVRASV---SIPVLRKDFVVQPYQIHEARAHGADMLLLIVAALEQSVLVSMLDRTE 159 (272)
T ss_dssp HHHHHHHHHHC---SSCEEEESCCCSHHHHHHHHHTTCSEEEEEGGGSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhC---CCCEEECccccCHHHHHHHHHcCCCEEEEecccCCHHHHHHHHHHHH
Confidence 77888888752 67887543333444578899999999987 4455566666555543
No 332
>3c48_A Predicted glycosyltransferases; retaining glycosyltransferase, beta alpha beta, substrate AS catalysis; 2.10A {Corynebacterium glutamicum} PDB: 3c4v_A* 3c4q_A*
Probab=42.26 E-value=1.5e+02 Score=24.69 Aligned_cols=65 Identities=11% Similarity=0.101 Sum_probs=41.8
Q ss_pred ccEEEEcCCCCCCCHHHHHHHHhccCCCCCCcEEEEeCCCcHHHHHHHHHcCCceEEeCCCCHHHHHHHHHHHhh
Q 026776 85 VDLIITDYCMPGMTGYELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVKLSDVKRIKDYLTR 159 (233)
Q Consensus 85 ~DlvllD~~mp~~~g~~ll~~Lr~~~~~~~~piIvlt~~~~~~~~~~al~~Ga~dyL~KP~~~~eL~~~~~~l~~ 159 (233)
.|++++-.. .+.-|..+++.+.. .+|+|+.. ... ..+.+..|..+++..|.+.+++.+.+..+..
T Consensus 326 adv~v~ps~-~e~~~~~~~Eama~-----G~PvI~~~-~~~---~~e~i~~~~~g~~~~~~d~~~la~~i~~l~~ 390 (438)
T 3c48_A 326 ADIVAVPSF-NESFGLVAMEAQAS-----GTPVIAAR-VGG---LPIAVAEGETGLLVDGHSPHAWADALATLLD 390 (438)
T ss_dssp CSEEEECCS-CCSSCHHHHHHHHT-----TCCEEEES-CTT---HHHHSCBTTTEEEESSCCHHHHHHHHHHHHH
T ss_pred CCEEEECcc-ccCCchHHHHHHHc-----CCCEEecC-CCC---hhHHhhCCCcEEECCCCCHHHHHHHHHHHHc
Confidence 577666332 23446667777653 67877643 322 2345567788999999999999777666543
No 333
>2hsj_A Putative platelet activating factor; structr genomics, structural genomics, PSI-2; HET: MSE; 1.50A {Streptococcus pneumoniae} SCOP: c.23.10.3
Probab=42.02 E-value=18 Score=27.23 Aligned_cols=86 Identities=16% Similarity=0.113 Sum_probs=49.6
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHhhcCCEE-EEEC---CHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCCCC------
Q 026776 28 EEVHVLAVDDSFVDRKVIERLLTISSCKV-TAVD---SGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGM------ 97 (233)
Q Consensus 28 ~~~~ILIVddd~~~~~~l~~~L~~~g~~v-~~a~---~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp~~------ 97 (233)
+..+|+++.|.-.....+.+.|... +.+ -..- +..+.+..+.. .+....||+|++-+...+.
T Consensus 33 ~~~~i~~~GDSit~g~~~~~~l~~~-~~v~n~g~~G~~~~~~~~~l~~-------~~~~~~pd~vvi~~G~ND~~~~~~~ 104 (214)
T 2hsj_A 33 VEPNILFIGDSIVEYYPLQELFGTS-KTIVNRGIRGYQTGLLLENLDA-------HLYGGAVDKIFLLIGTNDIGKDVPV 104 (214)
T ss_dssp SCCSEEEEESHHHHTCCHHHHHCSS-SCEEEEECTTCCHHHHHHTGGG-------GCCCSCCCEEEEECCHHHHHTTCCH
T ss_pred ccCCEEEEecchhcCCCHHHHcCCc-ceEEecCccchhHHHHHHHhhH-------HHHhcCCCEEEEEEecCcCCcCCCH
Confidence 4678999999987766667676543 333 2232 33334433321 1234578999996643321
Q ss_pred -----CHHHHHHHHhccCCCCCCcEEEEeCC
Q 026776 98 -----TGYELLKKIKDSSALREIPVVIMSSE 123 (233)
Q Consensus 98 -----~g~~ll~~Lr~~~~~~~~piIvlt~~ 123 (233)
+-..+++.+++..+ ...|++++..
T Consensus 105 ~~~~~~l~~~i~~l~~~~p--~~~iil~~~~ 133 (214)
T 2hsj_A 105 NEALNNLEAIIQSVARDYP--LTEIKLLSIL 133 (214)
T ss_dssp HHHHHHHHHHHHHHHHHCT--TCEEEEECCC
T ss_pred HHHHHHHHHHHHHHHHhCC--CCeEEEEecC
Confidence 11245667776654 6778877654
No 334
>3axs_A Probable N(2),N(2)-dimethylguanosine tRNA methylt TRM1; structural genomics, riken structural genomics/proteomics in RSGI; HET: SFG; 2.16A {Aquifex aeolicus} PDB: 3axt_A*
Probab=41.91 E-value=54 Score=28.21 Aligned_cols=51 Identities=14% Similarity=0.037 Sum_probs=37.5
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhcCCE---EEE-ECCHHHHHH-HhhhhhhhhccCCCCCcccEEEEcC
Q 026776 30 VHVLAVDDSFVDRKVIERLLTISSCK---VTA-VDSGRRALQ-FLGLDEEQSINGFDGLKVDLIITDY 92 (233)
Q Consensus 30 ~~ILIVddd~~~~~~l~~~L~~~g~~---v~~-a~~~~~al~-~l~~~~~~~~~~~~~~~~DlvllD~ 92 (233)
-+|..||-++...+.+++.++..|.. +.. ..|..+.+. .. ...||+|++|.
T Consensus 78 ~~V~avDi~~~av~~~~~N~~~Ngl~~~~v~v~~~Da~~~l~~~~------------~~~fD~V~lDP 133 (392)
T 3axs_A 78 EKAYANDISSKAIEIMKENFKLNNIPEDRYEIHGMEANFFLRKEW------------GFGFDYVDLDP 133 (392)
T ss_dssp EEEEEECSCHHHHHHHHHHHHHTTCCGGGEEEECSCHHHHHHSCC------------SSCEEEEEECC
T ss_pred CEEEEEECCHHHHHHHHHHHHHhCCCCceEEEEeCCHHHHHHHhh------------CCCCcEEEECC
Confidence 56999999999999999999887752 443 445555443 22 23699999997
No 335
>1f0k_A MURG, UDP-N-acetylglucosamine-N-acetylmuramyl- (pentapeptide) pyrophosphoryl-undecaprenol...; rossmann fold, transferase; 1.90A {Escherichia coli} SCOP: c.87.1.2 PDB: 1nlm_A*
Probab=41.81 E-value=69 Score=26.03 Aligned_cols=62 Identities=11% Similarity=0.125 Sum_probs=38.7
Q ss_pred ccEEEEcCCCCCCCHHHHHHHHhccCCCCCCcEEEEeCCC--c-HHH-HHHHHHcCCceEEeCCCC--HHHHHHHHHHH
Q 026776 85 VDLIITDYCMPGMTGYELLKKIKDSSALREIPVVIMSSEN--I-LAR-IDRCLEDGAEDFIVKPVK--LSDVKRIKDYL 157 (233)
Q Consensus 85 ~DlvllD~~mp~~~g~~ll~~Lr~~~~~~~~piIvlt~~~--~-~~~-~~~al~~Ga~dyL~KP~~--~~eL~~~~~~l 157 (233)
.|++++-- + |..+++.+.. .+|+|+....+ . ... .....+.|. +++..+-+ .++|.+.+..+
T Consensus 255 ad~~v~~s---g--~~~~~EAma~-----G~Pvi~~~~~g~~~~q~~~~~~~~~~g~-g~~~~~~d~~~~~la~~i~~l 322 (364)
T 1f0k_A 255 ADVVVCRS---G--ALTVSEIAAA-----GLPALFVPFQHKDRQQYWNALPLEKAGA-AKIIEQPQLSVDAVANTLAGW 322 (364)
T ss_dssp CSEEEECC---C--HHHHHHHHHH-----TCCEEECCCCCTTCHHHHHHHHHHHTTS-EEECCGGGCCHHHHHHHHHTC
T ss_pred CCEEEECC---c--hHHHHHHHHh-----CCCEEEeeCCCCchhHHHHHHHHHhCCc-EEEeccccCCHHHHHHHHHhc
Confidence 46666632 2 7777887764 67888764332 1 111 234556777 99998865 88887766543
No 336
>2yzr_A Pyridoxal biosynthesis lyase PDXS; redox protein, pyridoxal phosphate, structural genomi NPPSFA; 2.30A {Methanocaldococcus jannaschii}
Probab=41.61 E-value=36 Score=28.73 Aligned_cols=42 Identities=24% Similarity=0.350 Sum_probs=31.6
Q ss_pred HHHHHHHHhccCCCCCCcEEEEeCC--CcHHHHHHHHHcCCceEEeC
Q 026776 99 GYELLKKIKDSSALREIPVVIMSSE--NILARIDRCLEDGAEDFIVK 143 (233)
Q Consensus 99 g~~ll~~Lr~~~~~~~~piIvlt~~--~~~~~~~~al~~Ga~dyL~K 143 (233)
++++++++++.. .+|+|+++.. .+.+.+.++++.|+++++.=
T Consensus 228 ~lell~~i~~~~---~IPVV~VAeGGI~Tpeda~~~l~~GaDgV~VG 271 (330)
T 2yzr_A 228 LYEVLLEVKKLG---RLPVVNFAAGGVATPADAALMMQLGSDGVFVG 271 (330)
T ss_dssp HHHHHHHHHHHT---SCSSEEEECSCCCSHHHHHHHHHTTCSCEEES
T ss_pred hHHHHHHHHHhC---CCCeEEEEECCCCCHHHHHHHHHcCcCEEeeH
Confidence 568899988742 6788644444 35888999999999999753
No 337
>1p9l_A Dihydrodipicolinate reductase; oxidoreductase, lysine biosynthesis, NADH binding specificity, TB structural genomics consortium; HET: NAD PDC PG4; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.3 d.81.1.3 PDB: 1c3v_A* 1yl5_A 1yl7_A* 1yl6_A*
Probab=41.28 E-value=1.3e+02 Score=23.85 Aligned_cols=78 Identities=14% Similarity=0.144 Sum_probs=44.1
Q ss_pred cEEEEEeCCHHHHHHHHHHHhh-cCCEEEEECCHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCCCCCHHHHHHHHhc
Q 026776 30 VHVLAVDDSFVDRKVIERLLTI-SSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKKIKD 108 (233)
Q Consensus 30 ~~ILIVddd~~~~~~l~~~L~~-~g~~v~~a~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp~~~g~~ll~~Lr~ 108 (233)
+||.|+.-.-.+...+.+.+.. .++++..+-+..+-++.+ ....+| |++|+.-|. ...+.+....+
T Consensus 1 mkV~V~Ga~G~mG~~i~~~~~~~~~~elva~~d~~~dl~~~-----------~~~~~D-vvIDfT~p~-a~~~~~~~a~~ 67 (245)
T 1p9l_A 1 MRVGVLGAKGKVGTTMVRAVAAADDLTLSAELDAGDPLSLL-----------TDGNTE-VVIDFTHPD-VVMGNLEFLID 67 (245)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHCTTCEEEEEECTTCCTHHH-----------HHTTCC-EEEECSCTT-THHHHHHHHHH
T ss_pred CEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEccCCCHHHH-----------hccCCc-EEEEccChH-HHHHHHHHHHH
Confidence 4788888655555556656554 488887653211111111 012468 777888665 45666666554
Q ss_pred cCCCCCCcEEEEeCCC
Q 026776 109 SSALREIPVVIMSSEN 124 (233)
Q Consensus 109 ~~~~~~~piIvlt~~~ 124 (233)
. .+++|+-|...
T Consensus 68 ~----g~~~VigTTG~ 79 (245)
T 1p9l_A 68 N----GIHAVVGTTGF 79 (245)
T ss_dssp T----TCEEEECCCCC
T ss_pred c----CCCEEEcCCCC
Confidence 3 56777755433
No 338
>3ew7_A LMO0794 protein; Q8Y8U8_lismo, putative NAD-dependent epimerase/dehydratase, LMR162, NESG, structural genomics, PSI-2; 2.73A {Listeria monocytogenes}
Probab=41.16 E-value=40 Score=25.31 Aligned_cols=32 Identities=13% Similarity=-0.024 Sum_probs=25.4
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhcCCEEEEECC
Q 026776 30 VHVLAVDDSFVDRKVIERLLTISSCKVTAVDS 61 (233)
Q Consensus 30 ~~ILIVddd~~~~~~l~~~L~~~g~~v~~a~~ 61 (233)
|+|||..-.-.+...+.+.|...|++|.....
T Consensus 1 MkvlVtGatG~iG~~l~~~L~~~g~~V~~~~R 32 (221)
T 3ew7_A 1 MKIGIIGATGRAGSRILEEAKNRGHEVTAIVR 32 (221)
T ss_dssp CEEEEETTTSHHHHHHHHHHHHTTCEEEEEES
T ss_pred CeEEEEcCCchhHHHHHHHHHhCCCEEEEEEc
Confidence 47899998888888888888888988877643
No 339
>2nvw_A Galactose/lactose metabolism regulatory protein GAL80; transcription, galactose metabolism, repressor; 2.10A {Kluyveromyces lactis} SCOP: c.2.1.3 d.81.1.5 PDB: 3e1k_A
Probab=41.12 E-value=1e+02 Score=26.99 Aligned_cols=47 Identities=9% Similarity=0.172 Sum_probs=31.7
Q ss_pred CCcEEEEeCCC--cHHHHHHHHHcC------CceEEeCCCC--HHHHHHHHHHHhhh
Q 026776 114 EIPVVIMSSEN--ILARIDRCLEDG------AEDFIVKPVK--LSDVKRIKDYLTRD 160 (233)
Q Consensus 114 ~~piIvlt~~~--~~~~~~~al~~G------a~dyL~KP~~--~~eL~~~~~~l~~~ 160 (233)
.+-+|+++... ..+.+..|+++| ..=|+.||+. .++..++++...+.
T Consensus 108 ~vD~V~I~tp~~~H~~~~~~al~aG~~~~~~khVl~EKPla~~~~ea~~l~~~a~~~ 164 (479)
T 2nvw_A 108 DIDMIVVSVKVPEHYEVVKNILEHSSQNLNLRYLYVEWALAASVQQAEELYSISQQR 164 (479)
T ss_dssp TCSEEEECSCHHHHHHHHHHHHHHSSSCSSCCEEEEESSSSSSHHHHHHHHHHHHTC
T ss_pred CCCEEEEcCCcHHHHHHHHHHHHCCCCcCCceeEEEeCCCcCCHHHHHHHHHHHHHc
Confidence 45556665543 356677899999 7888999964 66666666655443
No 340
>2px2_A Genome polyprotein [contains: capsid protein C (core protein); envelope protein M...; methyltransferase, SAH; HET: SAH; 2.00A {Murray valley encephalitis virus} PDB: 2px4_A* 2px5_A* 2pxa_A* 2pxc_A* 2px8_A* 2oy0_A*
Probab=41.08 E-value=44 Score=27.33 Aligned_cols=64 Identities=17% Similarity=0.216 Sum_probs=45.1
Q ss_pred CCcccEEEEcCCCCCCCHHHHHHHHhccCCCCCCcEEEEeCCCcHHHHHHHHHcCCceEEeCCCCH--HHHHHHHHHHhh
Q 026776 82 GLKVDLIITDYCMPGMTGYELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVKL--SDVKRIKDYLTR 159 (233)
Q Consensus 82 ~~~~DlvllD~~mp~~~g~~ll~~Lr~~~~~~~~piIvlt~~~~~~~~~~al~~Ga~dyL~KP~~~--~eL~~~~~~l~~ 159 (233)
...+|+||+|+. |. +|...+...|... ..+.+.+.++-|...|+.|=|.. .++.+.++.+.+
T Consensus 137 ~~~~DvVLSDMA-Pn-SG~~~vD~~Rs~~--------------aL~~A~~~Lk~gG~~FvvKVFqg~~~~~~~~l~~lk~ 200 (269)
T 2px2_A 137 SEISDTLLCDIG-ES-SPSAEIEEQRTLR--------------ILEMVSDWLSRGPKEFCIKILCPYMPKVIEKLESLQR 200 (269)
T ss_dssp CCCCSEEEECCC-CC-CSCHHHHHHHHHH--------------HHHHHHHHHTTCCSEEEEEESCTTSHHHHHHHHHHHH
T ss_pred CCCCCEEEeCCC-CC-CCccHHHHHHHHH--------------HHHHHHHHhhcCCcEEEEEECCCCchHHHHHHHHHHH
Confidence 346899999975 44 7777777777532 23556677877777899999987 677666666665
Q ss_pred hh
Q 026776 160 DV 161 (233)
Q Consensus 160 ~~ 161 (233)
.-
T Consensus 201 ~F 202 (269)
T 2px2_A 201 RF 202 (269)
T ss_dssp HH
T ss_pred Hc
Confidence 43
No 341
>3tr6_A O-methyltransferase; cellular processes; HET: SAH; 2.70A {Coxiella burnetii} SCOP: c.66.1.0
Probab=40.66 E-value=1.1e+02 Score=22.98 Aligned_cols=70 Identities=10% Similarity=0.034 Sum_probs=44.2
Q ss_pred CcEEEEEeCCHHHHHHHHHHHhhcCCE--EE-EECCHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCCCCCHHHHHHH
Q 026776 29 EVHVLAVDDSFVDRKVIERLLTISSCK--VT-AVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKK 105 (233)
Q Consensus 29 ~~~ILIVddd~~~~~~l~~~L~~~g~~--v~-~a~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp~~~g~~ll~~ 105 (233)
..+|..+|-++...+..++.++..|.. +. ...+..+.+..+.... ....||+|++|... .+-..+++.
T Consensus 89 ~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~~~~-------~~~~fD~v~~~~~~--~~~~~~l~~ 159 (225)
T 3tr6_A 89 DGTLITCDVDEKSTALAKEYWEKAGLSDKIGLRLSPAKDTLAELIHAG-------QAWQYDLIYIDADK--ANTDLYYEE 159 (225)
T ss_dssp TCEEEEEESCHHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHTTT-------CTTCEEEEEECSCG--GGHHHHHHH
T ss_pred CCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeCCHHHHHHHhhhcc-------CCCCccEEEECCCH--HHHHHHHHH
Confidence 468999999999999999888877642 33 3556666655441100 01479999998742 223344444
Q ss_pred Hh
Q 026776 106 IK 107 (233)
Q Consensus 106 Lr 107 (233)
+.
T Consensus 160 ~~ 161 (225)
T 3tr6_A 160 SL 161 (225)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 342
>2avd_A Catechol-O-methyltransferase; structural genomics, structural genomics consortium, SGC; HET: SAM; 1.70A {Homo sapiens} SCOP: c.66.1.1
Probab=40.61 E-value=1.2e+02 Score=22.96 Aligned_cols=70 Identities=10% Similarity=0.045 Sum_probs=43.4
Q ss_pred CcEEEEEeCCHHHHHHHHHHHhhcCC--EEE-EECCHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCCCCCHHHHHHH
Q 026776 29 EVHVLAVDDSFVDRKVIERLLTISSC--KVT-AVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKK 105 (233)
Q Consensus 29 ~~~ILIVddd~~~~~~l~~~L~~~g~--~v~-~a~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp~~~g~~ll~~ 105 (233)
..+|..+|-++...+..++.++..|. .+. ...+..+.+..+...+ ....+|+|++|.. ..+-..+++.
T Consensus 94 ~~~v~~vD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~~~~~~~~~-------~~~~~D~v~~d~~--~~~~~~~l~~ 164 (229)
T 2avd_A 94 DGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLKPALETLDELLAAG-------EAGTFDVAVVDAD--KENCSAYYER 164 (229)
T ss_dssp TCEEEEEESCSHHHHHHHHHHHHTTCTTTEEEEESCHHHHHHHHHHTT-------CTTCEEEEEECSC--STTHHHHHHH
T ss_pred CCEEEEEECCHHHHHHHHHHHHHCCCCCeEEEEEcCHHHHHHHHHhcC-------CCCCccEEEECCC--HHHHHHHHHH
Confidence 46899999999988888888877653 233 3456655554431100 0146999999864 2333444555
Q ss_pred Hh
Q 026776 106 IK 107 (233)
Q Consensus 106 Lr 107 (233)
+.
T Consensus 165 ~~ 166 (229)
T 2avd_A 165 CL 166 (229)
T ss_dssp HH
T ss_pred HH
Confidence 43
No 343
>3ovp_A Ribulose-phosphate 3-epimerase; iron binding, isomerase; HET: XPE; 1.70A {Homo sapiens} SCOP: c.1.2.0 PDB: 3ovq_A* 3ovr_A* 3qc3_A
Probab=40.39 E-value=21 Score=28.28 Aligned_cols=59 Identities=8% Similarity=0.086 Sum_probs=37.6
Q ss_pred CHHHHHHHHhccC-CCCCCcEEE--EeCCCcHHHHHHHHHcCCceEEeCCCCHHHHHHHHHHHhh
Q 026776 98 TGYELLKKIKDSS-ALREIPVVI--MSSENILARIDRCLEDGAEDFIVKPVKLSDVKRIKDYLTR 159 (233)
Q Consensus 98 ~g~~ll~~Lr~~~-~~~~~piIv--lt~~~~~~~~~~al~~Ga~dyL~KP~~~~eL~~~~~~l~~ 159 (233)
-|.++++.||+.. + ..++.+ +..+ -..++..+.++|++.+..-......+.+.++.+.+
T Consensus 49 ~G~~~v~~ir~~~~~--~~~~dvhLmv~~-p~~~i~~~~~aGad~itvH~Ea~~~~~~~i~~i~~ 110 (228)
T 3ovp_A 49 FGHPVVESLRKQLGQ--DPFFDMHMMVSK-PEQWVKPMAVAGANQYTFHLEATENPGALIKDIRE 110 (228)
T ss_dssp BCHHHHHHHHHHHCS--SSCEEEEEECSC-GGGGHHHHHHHTCSEEEEEGGGCSCHHHHHHHHHH
T ss_pred cCHHHHHHHHHhhCC--CCcEEEEEEeCC-HHHHHHHHHHcCCCEEEEccCCchhHHHHHHHHHH
Confidence 4889999999762 3 455543 3332 33567788899999887755433445566665544
No 344
>3w01_A Heptaprenylglyceryl phosphate synthase; biosynthesis, prenyltransferases, enzyme catalysis, transfer; HET: PGE; 1.54A {Staphylococcus aureus} PDB: 3w02_A
Probab=40.36 E-value=23 Score=28.43 Aligned_cols=59 Identities=19% Similarity=0.187 Sum_probs=0.0
Q ss_pred HHHHHHhhhhhhhhccCCCCCcccEEEEcCCC--CCCCHHHHHHHHhccCCCCCCcEEEEeCCCcHHHHHHHHHcCCceE
Q 026776 63 RRALQFLGLDEEQSINGFDGLKVDLIITDYCM--PGMTGYELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDF 140 (233)
Q Consensus 63 ~~al~~l~~~~~~~~~~~~~~~~DlvllD~~m--p~~~g~~ll~~Lr~~~~~~~~piIvlt~~~~~~~~~~al~~Ga~dy 140 (233)
.++++.+ .....|.|++-... ...+-.++++.||+ . .+|++++..+. ..+..|+|.|
T Consensus 26 ~~~l~~~-----------~~~GtDaI~vGgs~gvt~~~~~~~v~~ik~--~--~~Piil~p~~~------~~~~~gaD~i 84 (235)
T 3w01_A 26 DDDLDAI-----------CMSQTDAIMIGGTDDVTEDNVIHLMSKIRR--Y--PLPLVLEISNI------ESVMPGFDFY 84 (235)
T ss_dssp HHHHHHH-----------HTSSCSEEEECCSSCCCHHHHHHHHHHHTT--S--CSCEEEECCCS------TTCCTTCSEE
T ss_pred HHHHHHH-----------HHcCCCEEEECCcCCcCHHHHHHHHHHhcC--c--CCCEEEecCCH------HHhhcCCCEE
Q ss_pred Ee
Q 026776 141 IV 142 (233)
Q Consensus 141 L~ 142 (233)
|.
T Consensus 85 l~ 86 (235)
T 3w01_A 85 FV 86 (235)
T ss_dssp EE
T ss_pred EE
No 345
>3qk7_A Transcriptional regulators; structural genomics, NEW YORK structural genomix research CO NYSGXRC, PSI-2, protein structur initiative; 2.70A {Yersinia pestis}
Probab=40.24 E-value=76 Score=25.12 Aligned_cols=15 Identities=13% Similarity=0.011 Sum_probs=9.0
Q ss_pred HHHHHhhcCCEEEEE
Q 026776 45 IERLLTISSCKVTAV 59 (233)
Q Consensus 45 l~~~L~~~g~~v~~a 59 (233)
+++.+++.||.+..+
T Consensus 32 i~~~a~~~g~~~~~~ 46 (294)
T 3qk7_A 32 IGIELGKRGLDLLLI 46 (294)
T ss_dssp HHHHHHHTTCEEEEE
T ss_pred HHHHHHHCCCEEEEE
Confidence 444456677766654
No 346
>3c3p_A Methyltransferase; NP_951602.1, structural genomics, joint for structural genomics, JCSG, protein structure initiative transferase; 1.90A {Geobacter sulfurreducens pca}
Probab=39.96 E-value=1.1e+02 Score=22.73 Aligned_cols=65 Identities=15% Similarity=0.189 Sum_probs=42.7
Q ss_pred CcEEEEEeCCHHHHHHHHHHHhhcCC--EEE-EECCHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCCCCCHHHHHHH
Q 026776 29 EVHVLAVDDSFVDRKVIERLLTISSC--KVT-AVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKK 105 (233)
Q Consensus 29 ~~~ILIVddd~~~~~~l~~~L~~~g~--~v~-~a~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp~~~g~~ll~~ 105 (233)
..+|..||-++...+..++.++..|. .+. ...+..+.+..+ .. ||+|++|.. ..+-..+++.
T Consensus 81 ~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~------------~~-fD~v~~~~~--~~~~~~~l~~ 145 (210)
T 3c3p_A 81 SSRVVMIDPDRDNVEHARRMLHDNGLIDRVELQVGDPLGIAAGQ------------RD-IDILFMDCD--VFNGADVLER 145 (210)
T ss_dssp TCEEEEEESCHHHHHHHHHHHHHHSGGGGEEEEESCHHHHHTTC------------CS-EEEEEEETT--TSCHHHHHHH
T ss_pred CCEEEEEECCHHHHHHHHHHHHHCCCCceEEEEEecHHHHhccC------------CC-CCEEEEcCC--hhhhHHHHHH
Confidence 46899999999988888888876654 233 344554443222 23 999999954 3345566776
Q ss_pred Hhc
Q 026776 106 IKD 108 (233)
Q Consensus 106 Lr~ 108 (233)
+..
T Consensus 146 ~~~ 148 (210)
T 3c3p_A 146 MNR 148 (210)
T ss_dssp HGG
T ss_pred HHH
Confidence 654
No 347
>2pyy_A Ionotropic glutamate receptor bacterial homologue; GLUR0 ligand binding domain, transport protein; HET: GLU; 2.10A {Nostoc punctiforme}
Probab=39.91 E-value=72 Score=23.47 Aligned_cols=50 Identities=22% Similarity=0.139 Sum_probs=37.9
Q ss_pred CCCCcEEEEEeCCHHHHHHHHHHHhhcCCEEEEECCHHHHHHHhhhhhhhhccCCCCCcccEEEEc
Q 026776 26 DTEEVHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITD 91 (233)
Q Consensus 26 ~~~~~~ILIVddd~~~~~~l~~~L~~~g~~v~~a~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD 91 (233)
+.+..+|.++..... ..+|...|..+..+.+..++++.+ .....|+++.+
T Consensus 109 dL~g~~i~~~~g~~~-----~~~l~~~~~~~~~~~~~~~~~~~l-----------~~g~~D~~~~~ 158 (228)
T 2pyy_A 109 DLPGKVVATTAGSTA-----ATYLREHHISVLEVPKIEEAYKAL-----------QTKKADAVVFD 158 (228)
T ss_dssp GCTTCEEEEETTSHH-----HHHHHHTTCEEEEESSHHHHHHHH-----------HTTSSSEEEEE
T ss_pred HcCCCeEEEEcCcHH-----HHHHHHcCCceEecCCHHHHHHHH-----------HcCCCCEEEec
Confidence 345678888877652 345556788899999999999998 45678999987
No 348
>2l69_A Rossmann 2X3 fold protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=39.85 E-value=86 Score=21.27 Aligned_cols=119 Identities=12% Similarity=0.119 Sum_probs=65.5
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhcCCEEEEECCHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCCCCC-HHHHHHHHhc
Q 026776 30 VHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMT-GYELLKKIKD 108 (233)
Q Consensus 30 ~~ILIVddd~~~~~~l~~~L~~~g~~v~~a~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp~~~-g~~ll~~Lr~ 108 (233)
+-|++...++.....+..+++..||.|..+.+.++.-+.+..-- .....-++++-. .+.. .-..++.++.
T Consensus 3 ivivvfstdeetlrkfkdiikkngfkvrtvrspqelkdsieelv-------kkynativvvvv--ddkewaekairfvks 73 (134)
T 2l69_A 3 IVIVVFSTDEETLRKFKDIIKKNGFKVRTVRSPQELKDSIEELV-------KKYNATIVVVVV--DDKEWAEKAIRFVKS 73 (134)
T ss_dssp EEEEECCCCHHHHHHHHHHHHHTTCEEEEECSHHHHHHHHHHHT-------TCCCCEEEEEEC--SSHHHHHHHHHHHHH
T ss_pred EEEEEEeCCHHHHHHHHHHHHhcCceEEEecCHHHHHHHHHHHH-------HHhCCeEEEEEE--ccHHHHHHHHHHHHh
Confidence 33455566777788899999999999999999988876663211 222233333321 1221 1234445555
Q ss_pred cCCCCCCcEEEEeCCCc--HHHHHHHHHcCCceEEeCCCCHHHHHHHHHHHhhhh
Q 026776 109 SSALREIPVVIMSSENI--LARIDRCLEDGAEDFIVKPVKLSDVKRIKDYLTRDV 161 (233)
Q Consensus 109 ~~~~~~~piIvlt~~~~--~~~~~~al~~Ga~dyL~KP~~~~eL~~~~~~l~~~~ 161 (233)
.+. .+-||++-...+ ++...+..+.|..-- --.+++++...++++.+..
T Consensus 74 lga--qvliiiydqdqnrleefsrevrrrgfevr--tvtspddfkkslerlirev 124 (134)
T 2l69_A 74 LGA--QVLIIIYDQDQNRLEEFSREVRRRGFEVR--TVTSPDDFKKSLERLIREV 124 (134)
T ss_dssp HCC--CCEEEEECSCHHHHHHHHHHHHHTTCCEE--EESSHHHHHHHHHHHHHHH
T ss_pred cCC--eEEEEEEeCchhHHHHHHHHHHhcCceEE--EecChHHHHHHHHHHHHHh
Confidence 443 555555543321 233444445554321 1234577777777666644
No 349
>4gx0_A TRKA domain protein; membrane protein, ION channel, ADP binding, NAD binding, MEM transport protein; HET: MAL GLC; 2.60A {Geobacter sulfurreducens} PDB: 4gx1_A* 4gx2_A* 4gx5_A 4gvl_A*
Probab=39.84 E-value=1.2e+02 Score=27.03 Aligned_cols=107 Identities=13% Similarity=0.131 Sum_probs=55.9
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHhhcCCEEEEECCHHHHHHHhhhh-hhhh----------ccCCCCCcccEEEEcCCCCC
Q 026776 28 EEVHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLD-EEQS----------INGFDGLKVDLIITDYCMPG 96 (233)
Q Consensus 28 ~~~~ILIVddd~~~~~~l~~~L~~~g~~v~~a~~~~~al~~l~~~-~~~~----------~~~~~~~~~DlvllD~~mp~ 96 (233)
.+.+|+|+.-...- ..+.+.|...|+.+...+...+.++.+... +-.. ...+.-.+.|.+++ ...+
T Consensus 126 ~~~hviI~G~g~~g-~~la~~L~~~~~~vvvid~~~~~~~~~~~~~~~~~i~Gd~~~~~~L~~a~i~~a~~vi~--t~~D 202 (565)
T 4gx0_A 126 TRGHILIFGIDPIT-RTLIRKLESRNHLFVVVTDNYDQALHLEEQEGFKVVYGSPTDAHVLAGLRVAAARSIIA--NLSD 202 (565)
T ss_dssp CCSCEEEESCCHHH-HHHHHHTTTTTCCEEEEESCHHHHHHHHHSCSSEEEESCTTCHHHHHHTTGGGCSEEEE--CSCH
T ss_pred cCCeEEEECCChHH-HHHHHHHHHCCCCEEEEECCHHHHHHHHHhcCCeEEEeCCCCHHHHHhcCcccCCEEEE--eCCc
Confidence 34567777776643 344445566666666665555554444322 1000 00011234677777 2233
Q ss_pred CCHHHHHHHHhccCCCCCCcEEEEeCCCcHHHHHHHHHcCCceEEe
Q 026776 97 MTGYELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIV 142 (233)
Q Consensus 97 ~~g~~ll~~Lr~~~~~~~~piIvlt~~~~~~~~~~al~~Ga~dyL~ 142 (233)
.....++..+|+.. ..++|+...+. +.......+|++..+.
T Consensus 203 ~~n~~~~~~ar~~~---~~~iiar~~~~--~~~~~l~~~Gad~vi~ 243 (565)
T 4gx0_A 203 PDNANLCLTVRSLC---QTPIIAVVKEP--VHGELLRLAGANQVVP 243 (565)
T ss_dssp HHHHHHHHHHHTTC---CCCEEEECSSG--GGHHHHHHHTCSEEEC
T ss_pred HHHHHHHHHHHHhc---CceEEEEECCH--HHHHHHHHcCCCEEEC
Confidence 33344455556543 67777766544 3344556789987665
No 350
>2i1o_A Nicotinate phosphoribosyltransferase; ZIN ION, zinc finger M structural genomics, PSI, protein structure initiative; 2.40A {Thermoplasma acidophilum} PDB: 1ytd_A* 1yte_A* 1ytk_A
Probab=39.81 E-value=1.8e+02 Score=24.98 Aligned_cols=86 Identities=19% Similarity=0.155 Sum_probs=54.7
Q ss_pred HHHHHHHHhhcCC---EEEEECC----HHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCCC--CCHHHHHHHHhcc---
Q 026776 42 RKVIERLLTISSC---KVTAVDS----GRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPG--MTGYELLKKIKDS--- 109 (233)
Q Consensus 42 ~~~l~~~L~~~g~---~v~~a~~----~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp~--~~g~~ll~~Lr~~--- 109 (233)
.+.++.+.+..+. .+..+++ ..+|++.+.. . ..+|.|.+|- |.. .+-.++.+++++.
T Consensus 197 ~~A~~~~~~~~p~~~~~~vlvDT~d~~~~~al~~a~~---------l-~~~d~IrlDs-~~~~~gd~~~~v~~v~~~ld~ 265 (398)
T 2i1o_A 197 EEAWKLTLENTKNGQKSVLLIDTYMDEKFAAIKIAEM---------F-DKVDYIRLDT-PSSRRGNFEALIREVRWELAL 265 (398)
T ss_dssp HHHHHHHHHTCCTTSCCEEECCSSSCHHHHHHHHHTT---------C-SCCCEEEECC-CGGGCSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCCCCEEEEEcCchHHHHHHHHHHHh---------h-cCCcEEEeCC-CCCCcccHHHHHHHHHHHHHh
Confidence 5566666665553 2445555 4667665520 1 2589999995 333 5666777776632
Q ss_pred -CCCCCCcEEEEeCCCcHHHHHHHHHcCCceE
Q 026776 110 -SALREIPVVIMSSENILARIDRCLEDGAEDF 140 (233)
Q Consensus 110 -~~~~~~piIvlt~~~~~~~~~~al~~Ga~dy 140 (233)
.. ++ ..|+.++.-+.+.+.+..+.|+|.|
T Consensus 266 ~G~-~~-~~I~aSggl~~~~i~~l~~~GvD~~ 295 (398)
T 2i1o_A 266 RGR-SD-IKIMVSGGLDENTVKKLREAGAEAF 295 (398)
T ss_dssp TTC-TT-SEEEEESSCCHHHHHHHHHTTCCEE
T ss_pred CCC-Cc-eEEEEeCCCCHHHHHHHHHcCCCEE
Confidence 21 23 4777888888888888889998444
No 351
>3k4h_A Putative transcriptional regulator; structural genomics, protein structure INI NEW YORK structural genomix research consortium; HET: MAL; 2.80A {Bacillus cytotoxicus nvh 391-98}
Probab=39.66 E-value=69 Score=25.12 Aligned_cols=19 Identities=5% Similarity=0.046 Sum_probs=11.7
Q ss_pred HHHHHHHHhhcCCEEEEEC
Q 026776 42 RKVIERLLTISSCKVTAVD 60 (233)
Q Consensus 42 ~~~l~~~L~~~g~~v~~a~ 60 (233)
...+++.+++.||.+..+.
T Consensus 32 ~~gi~~~a~~~g~~~~~~~ 50 (292)
T 3k4h_A 32 IRGISSFAHVEGYALYMST 50 (292)
T ss_dssp HHHHHHHHHHTTCEEEECC
T ss_pred HHHHHHHHHHcCCEEEEEe
Confidence 3344555667788777654
No 352
>1k1e_A Deoxy-D-mannose-octulosonate 8-phosphate phosphat; structural genomics, KDO 8-P phosphatase, structure function project, S2F; HET: MES; 1.67A {Haemophilus influenzae RD} SCOP: c.108.1.5 PDB: 1j8d_A*
Probab=39.57 E-value=94 Score=22.72 Aligned_cols=45 Identities=18% Similarity=0.188 Sum_probs=32.1
Q ss_pred HHHHHHHHhccCCCCCCcEEEEeCCCcHHHHHHHHHcCCceEEeCCCCH
Q 026776 99 GYELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVKL 147 (233)
Q Consensus 99 g~~ll~~Lr~~~~~~~~piIvlt~~~~~~~~~~al~~Ga~dyL~KP~~~ 147 (233)
..++++.|++. ..+++++|+.........+-..|.+.|+.....-
T Consensus 40 ~~~~l~~L~~~----G~~~~i~Tg~~~~~~~~~~~~lgl~~~~~~~k~k 84 (180)
T 1k1e_A 40 DGLGIKMLMDA----DIQVAVLSGRDSPILRRRIADLGIKLFFLGKLEK 84 (180)
T ss_dssp HHHHHHHHHHT----TCEEEEEESCCCHHHHHHHHHHTCCEEEESCSCH
T ss_pred hHHHHHHHHHC----CCeEEEEeCCCcHHHHHHHHHcCCceeecCCCCc
Confidence 35788888864 5689999988766555555678999888654433
No 353
>3h5l_A Putative branched-chain amino acid ABC transporter; structural genomics, PSI-2, protein structure initiative; 1.70A {Ruegeria pomeroyi}
Probab=39.42 E-value=1.7e+02 Score=24.42 Aligned_cols=70 Identities=7% Similarity=-0.028 Sum_probs=40.7
Q ss_pred cEEEEEeCCHH----HHHHHHHHHhhcCCEEEEE-------CCHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCCCCC
Q 026776 30 VHVLAVDDSFV----DRKVIERLLTISSCKVTAV-------DSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMT 98 (233)
Q Consensus 30 ~~ILIVddd~~----~~~~l~~~L~~~g~~v~~a-------~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp~~~ 98 (233)
-+|.++-++.. ..+.+++.+++.|..+... .+....+..+ ....+|+|++.... ..+
T Consensus 165 ~~vail~~~~~~g~~~~~~~~~~~~~~g~~vv~~~~~~~~~~d~~~~l~~i-----------~~~~~d~v~~~~~~-~~~ 232 (419)
T 3h5l_A 165 NKIAIITGPGIYSVNIANAIRDGAGEYGYDVSLFETVAIPVSDWGPTLAKL-----------RADPPAVIVVTHFY-PQD 232 (419)
T ss_dssp SEEEEEECSSHHHHHHHHHHHHHGGGGTCEEEEEEECCSSCSCCHHHHHHH-----------HHSCCSEEEECCCC-HHH
T ss_pred CEEEEEEcCcchhHHHHHHHHHHHHHcCCeEEEEecCCCCCccHHHHHHHH-----------HhcCCCEEEEcccc-Cch
Confidence 35555544433 3445556667778776542 3455566665 33468999985321 124
Q ss_pred HHHHHHHHhccCC
Q 026776 99 GYELLKKIKDSSA 111 (233)
Q Consensus 99 g~~ll~~Lr~~~~ 111 (233)
...+++.+++...
T Consensus 233 ~~~~~~~~~~~g~ 245 (419)
T 3h5l_A 233 QALFMNQFMTDPT 245 (419)
T ss_dssp HHHHHHHHTTSCC
T ss_pred HHHHHHHHHHcCC
Confidence 6678888887643
No 354
>3r2g_A Inosine 5'-monophosphate dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.94A {Legionella pneumophila subsp}
Probab=39.42 E-value=1.8e+02 Score=24.73 Aligned_cols=73 Identities=16% Similarity=0.113 Sum_probs=46.0
Q ss_pred CCEEEE--ECCHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCCCC------------CHHHHHHHHhccCCCCCCcEE
Q 026776 53 SCKVTA--VDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGM------------TGYELLKKIKDSSALREIPVV 118 (233)
Q Consensus 53 g~~v~~--a~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp~~------------~g~~ll~~Lr~~~~~~~~piI 118 (233)
+..|.. +.+.+++..... ...|.|.+... |+. ..++.+.++.+.. . |||
T Consensus 141 ~~~Vi~G~V~T~e~A~~a~~------------aGaD~I~Vg~g-~G~~~~tr~~~g~g~p~l~aI~~~~~~~---~-PVI 203 (361)
T 3r2g_A 141 SRCIMAGNVATYAGADYLAS------------CGADIIKAGIG-GGSVCSTRIKTGFGVPMLTCIQDCSRAD---R-SIV 203 (361)
T ss_dssp TCEEEEEEECSHHHHHHHHH------------TTCSEEEECCS-SSSCHHHHHHHCCCCCHHHHHHHHTTSS---S-EEE
T ss_pred CCeEEEcCcCCHHHHHHHHH------------cCCCEEEEcCC-CCcCccccccCCccHHHHHHHHHHHHhC---C-CEE
Confidence 444443 667777766652 34788888533 221 2344444444321 2 888
Q ss_pred EEeCCCcHHHHHHHHHcCCceEEe
Q 026776 119 IMSSENILARIDRCLEDGAEDFIV 142 (233)
Q Consensus 119 vlt~~~~~~~~~~al~~Ga~dyL~ 142 (233)
.-.+-.+...+.+++.+||+.+..
T Consensus 204 AdGGI~~~~di~kALa~GAd~V~i 227 (361)
T 3r2g_A 204 ADGGIKTSGDIVKALAFGADFVMI 227 (361)
T ss_dssp EESCCCSHHHHHHHHHTTCSEEEE
T ss_pred EECCCCCHHHHHHHHHcCCCEEEE
Confidence 777777789999999999988764
No 355
>3cbg_A O-methyltransferase; cyanobacterium; HET: SAH FER 4FE; 2.00A {Synechocystis SP}
Probab=39.24 E-value=99 Score=23.77 Aligned_cols=70 Identities=13% Similarity=0.078 Sum_probs=43.7
Q ss_pred CcEEEEEeCCHHHHHHHHHHHhhcCC--EEE-EECCHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCCCCCHHHHHHH
Q 026776 29 EVHVLAVDDSFVDRKVIERLLTISSC--KVT-AVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKK 105 (233)
Q Consensus 29 ~~~ILIVddd~~~~~~l~~~L~~~g~--~v~-~a~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp~~~g~~ll~~ 105 (233)
..+|..+|-++......++.++..|+ .+. ...+..+.+..+.... ....||+|++|... .+-..+++.
T Consensus 97 ~~~v~~iD~~~~~~~~a~~~~~~~g~~~~i~~~~~d~~~~l~~l~~~~-------~~~~fD~V~~d~~~--~~~~~~l~~ 167 (232)
T 3cbg_A 97 DGQIIACDQDPNATAIAKKYWQKAGVAEKISLRLGPALATLEQLTQGK-------PLPEFDLIFIDADK--RNYPRYYEI 167 (232)
T ss_dssp TCEEEEEESCHHHHHHHHHHHHHHTCGGGEEEEESCHHHHHHHHHTSS-------SCCCEEEEEECSCG--GGHHHHHHH
T ss_pred CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcC-------CCCCcCEEEECCCH--HHHHHHHHH
Confidence 35899999999998888888876664 233 3556666555442100 01469999999652 233445555
Q ss_pred Hh
Q 026776 106 IK 107 (233)
Q Consensus 106 Lr 107 (233)
+.
T Consensus 168 ~~ 169 (232)
T 3cbg_A 168 GL 169 (232)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 356
>3ijp_A DHPR, dihydrodipicolinate reductase; ssgcid, SBRI, decode biostructures, niaid, amino-acid biosynthesis, cytoplasm; HET: NAP; 2.30A {Bartonella henselae}
Probab=39.21 E-value=51 Score=27.15 Aligned_cols=48 Identities=6% Similarity=0.043 Sum_probs=20.5
Q ss_pred eeeccccccCCCCCCCCCcEEEEEeCCHHHHHHHHHHH-hhcCCEEEEE
Q 026776 12 LISDEIDGFDLSPSDTEEVHVLAVDDSFVDRKVIERLL-TISSCKVTAV 59 (233)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~ILIVddd~~~~~~l~~~L-~~~g~~v~~a 59 (233)
++++-+...+-......++||.|+.-.-...+.+.+.+ +..++++..+
T Consensus 4 ~~~~~~~~~~~~~~m~~~irV~V~Ga~GrMGr~i~~~v~~~~~~eLvg~ 52 (288)
T 3ijp_A 4 HHHHHMGTLEAQTQGPGSMRLTVVGANGRMGRELITAIQRRKDVELCAV 52 (288)
T ss_dssp -----------------CEEEEESSTTSHHHHHHHHHHHTCSSEEEEEE
T ss_pred ccccccchhhhhhhccCCeEEEEECCCCHHHHHHHHHHHhCCCCEEEEE
Confidence 44455555554555567899999995544555555444 4557777665
No 357
>2vpt_A Lipolytic enzyme; esterase, hydrolase; 1.40A {Clostridium thermocellum}
Probab=39.18 E-value=24 Score=26.81 Aligned_cols=87 Identities=14% Similarity=0.129 Sum_probs=49.4
Q ss_pred CCcEEEEEeCCHHH----------HHHHHHHHhhcCCEEEEE--------------------CCHHHHHHHhhhhhhhhc
Q 026776 28 EEVHVLAVDDSFVD----------RKVIERLLTISSCKVTAV--------------------DSGRRALQFLGLDEEQSI 77 (233)
Q Consensus 28 ~~~~ILIVddd~~~----------~~~l~~~L~~~g~~v~~a--------------------~~~~~al~~l~~~~~~~~ 77 (233)
++++|+++.|.-.. ...+.+.|...++.+... .+..+.+..+...
T Consensus 4 ~~~~i~~~GDSit~G~~~~~~~~~~~~l~~~l~~~~~~v~~~~~~~~G~~~~~~~~n~g~~G~~~~~~~~~l~~~----- 78 (215)
T 2vpt_A 4 KTIKIMPVGDSCTEGMGGGEMGSYRTELYRLLTQAGLSIDFVGSQRSGPSSLPDKDHEGHSGWTIPQIASNINNW----- 78 (215)
T ss_dssp CEEEEEEEESHHHHTCSSSTTCTTHHHHHHHHHHTTCEEEECCSEECCCTTCSCCEEEECTTCCHHHHHHHHHHH-----
T ss_pred CceEEEecccccccCCCCCCCCchHHHHHHHHHHcCCceEEEecccCCCCCCCCCCccCcCchhHHHHHHHHHHH-----
Confidence 46789999887543 456777777666655432 1223344333210
Q ss_pred cCCCCCcccEEEEcCCCCCC---------CHHHHHHHHhccCCCCCCcEEEEeCC
Q 026776 78 NGFDGLKVDLIITDYCMPGM---------TGYELLKKIKDSSALREIPVVIMSSE 123 (233)
Q Consensus 78 ~~~~~~~~DlvllD~~mp~~---------~g~~ll~~Lr~~~~~~~~piIvlt~~ 123 (233)
+....||+|++.+...+. +--.+++.+++..+ ..+|++++..
T Consensus 79 --l~~~~pd~vvi~~G~ND~~~~~~~~~~~l~~li~~i~~~~p--~~~ii~~~~~ 129 (215)
T 2vpt_A 79 --LNTHNPDVVFLWIGGNDLLLNGNLNATGLSNLIDQIFTVKP--NVTLFVADYY 129 (215)
T ss_dssp --HHHHCCSEEEEECCHHHHHHHCCCCHHHHHHHHHHHHHHCT--TCEEEEECCC
T ss_pred --hhccCCCEEEEEccccccCCCCChhHHHHHHHHHHHHHhCC--CCEEEEEeCC
Confidence 012468999987643321 12346777777644 6777776543
No 358
>4fxs_A Inosine-5'-monophosphate dehydrogenase; structural genomics, IMPDH, IMP, mycophenolic acid, MOA; HET: IMP MOA; 2.24A {Vibrio cholerae o1 biovar el tor}
Probab=39.17 E-value=2e+02 Score=25.36 Aligned_cols=45 Identities=16% Similarity=0.195 Sum_probs=30.8
Q ss_pred HHHHHHHHhccCCCCCCcEEEEeCCCcHHHHHHHHHcCCceEEeC
Q 026776 99 GYELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVK 143 (233)
Q Consensus 99 g~~ll~~Lr~~~~~~~~piIvlt~~~~~~~~~~al~~Ga~dyL~K 143 (233)
.++++.++.+......+|||.-.+-.+..++.+++.+||+.++.=
T Consensus 319 ~~~~i~~v~~~~~~~~iPVIa~GGI~~~~di~kala~GAd~V~iG 363 (496)
T 4fxs_A 319 QITAIADAAGVANEYGIPVIADGGIRFSGDISKAIAAGASCVMVG 363 (496)
T ss_dssp HHHHHHHHHHHHGGGTCCEEEESCCCSHHHHHHHHHTTCSEEEES
T ss_pred HHHHHHHHHHHhccCCCeEEEeCCCCCHHHHHHHHHcCCCeEEec
Confidence 344555554321112689988777778899999999999988764
No 359
>3iwp_A Copper homeostasis protein CUTC homolog; conserved sequence motif, metal-binding site, polymorphism, metal binding protein; 2.50A {Homo sapiens}
Probab=39.16 E-value=57 Score=26.93 Aligned_cols=93 Identities=26% Similarity=0.364 Sum_probs=55.1
Q ss_pred CCHHHHHHHHHHHhhc-CCEEEE------ECCHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCC-CCCHHHHHHHHhc
Q 026776 37 DSFVDRKVIERLLTIS-SCKVTA------VDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMP-GMTGYELLKKIKD 108 (233)
Q Consensus 37 dd~~~~~~l~~~L~~~-g~~v~~------a~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp-~~~g~~ll~~Lr~ 108 (233)
|.......++++++.. +..++. +.+..++++.+. ...+|-||..=+-+ ..+|++.+++|.+
T Consensus 136 dg~iD~~~~~~Li~~a~~l~vTFHRAFD~~~d~~~Ale~Li-----------~lGvdrILTSG~~~~a~~Gl~~Lk~Lv~ 204 (287)
T 3iwp_A 136 DGHIDKELCMSLMAICRPLPVTFHRAFDMVHDPMAALETLL-----------TLGFERVLTSGCDSSALEGLPLIKRLIE 204 (287)
T ss_dssp TSCBCHHHHHHHHHHHTTSCEEECGGGGGCSCHHHHHHHHH-----------HHTCSEEEECTTSSSTTTTHHHHHHHHH
T ss_pred CCCcCHHHHHHHHHHcCCCcEEEECchhccCCHHHHHHHHH-----------HcCCCEEECCCCCCChHHhHHHHHHHHH
Confidence 3344555666666543 344443 236788888873 33688999866544 4689999999976
Q ss_pred cCCCCCCcEEEEeCCCcHHHHHHHHH-cCCceEEe
Q 026776 109 SSALREIPVVIMSSENILARIDRCLE-DGAEDFIV 142 (233)
Q Consensus 109 ~~~~~~~piIvlt~~~~~~~~~~al~-~Ga~dyL~ 142 (233)
... ..+.|++- +--..+-+.+.++ .|++.|-.
T Consensus 205 ~a~-~rI~ImaG-GGV~~~Ni~~l~~~tG~~~~H~ 237 (287)
T 3iwp_A 205 QAK-GRIVVMPG-GGITDRNLQRILEGSGATEFHC 237 (287)
T ss_dssp HHT-TSSEEEEC-TTCCTTTHHHHHHHHCCSEEEE
T ss_pred HhC-CCCEEEEC-CCcCHHHHHHHHHhhCCCEEeE
Confidence 532 13444433 2223344444454 88888865
No 360
>2yw3_A 4-hydroxy-2-oxoglutarate aldolase/2-deydro-3- deoxyphosphogluconate aldolase; structural genomics, NPPSFA; 1.67A {Thermus thermophilus} PDB: 2yw4_A
Probab=39.01 E-value=1.3e+02 Score=23.08 Aligned_cols=82 Identities=11% Similarity=0.026 Sum_probs=52.5
Q ss_pred EECCHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCCC-C-CHHHHHHHHhccCCCCCCcEEEEeCCCcHHHHHHHHHc
Q 026776 58 AVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPG-M-TGYELLKKIKDSSALREIPVVIMSSENILARIDRCLED 135 (233)
Q Consensus 58 ~a~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp~-~-~g~~ll~~Lr~~~~~~~~piIvlt~~~~~~~~~~al~~ 135 (233)
-+.+..++.+... ...|.|-+ .|. . .|.+.++.++...+ ++|++.+-+= +.+.+.+++++
T Consensus 110 G~~t~~e~~~A~~------------~Gad~v~~---fpa~~~gG~~~lk~l~~~~~--~ipvvaiGGI-~~~n~~~~l~a 171 (207)
T 2yw3_A 110 GVLTPTEVERALA------------LGLSALKF---FPAEPFQGVRVLRAYAEVFP--EVRFLPTGGI-KEEHLPHYAAL 171 (207)
T ss_dssp EECSHHHHHHHHH------------TTCCEEEE---TTTTTTTHHHHHHHHHHHCT--TCEEEEBSSC-CGGGHHHHHTC
T ss_pred cCCCHHHHHHHHH------------CCCCEEEE---ecCccccCHHHHHHHHhhCC--CCcEEEeCCC-CHHHHHHHHhC
Confidence 3667888876652 24677766 342 2 38899999987644 7888866544 35677889999
Q ss_pred CCceEEeCC----CCHHHHHHHHHHH
Q 026776 136 GAEDFIVKP----VKLSDVKRIKDYL 157 (233)
Q Consensus 136 Ga~dyL~KP----~~~~eL~~~~~~l 157 (233)
|++.+..=- -+.+++.+..+.+
T Consensus 172 Ga~~vavgSai~~~d~~~i~~~a~~~ 197 (207)
T 2yw3_A 172 PNLLAVGGSWLLQGNLEAVRAKVRAA 197 (207)
T ss_dssp SSBSCEEESGGGSSCHHHHHHHHHHH
T ss_pred CCcEEEEehhhhCCCHHHHHHHHHHH
Confidence 988764221 3444454444443
No 361
>2b7n_A Probable nicotinate-nucleotide pyrophosphorylase; quinolinate phosphoribosyltransferase, quinolinic acid, HELI pylori, transferase; HET: NTM; 2.30A {Helicobacter pylori} PDB: 2b7p_A* 2b7q_A*
Probab=38.70 E-value=1e+02 Score=24.94 Aligned_cols=56 Identities=13% Similarity=0.231 Sum_probs=40.9
Q ss_pred HHHHHHHhccCCCCCCcEEEEeCCCcHHHHHHHHHcCCceEEeCCCCHHHHHHHHHHHh
Q 026776 100 YELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVKLSDVKRIKDYLT 158 (233)
Q Consensus 100 ~~ll~~Lr~~~~~~~~piIvlt~~~~~~~~~~al~~Ga~dyL~KP~~~~eL~~~~~~l~ 158 (233)
.+.++.+|+..+ ...++++.+.. .+++.+++++|+|....-.++++.+.++++.+.
T Consensus 169 ~~ai~~~r~~~~-~~~~i~vev~t--lee~~~A~~aGaD~I~ld~~~~~~l~~~v~~l~ 224 (273)
T 2b7n_A 169 KSFLTHARKNLP-FTAKIEIECES--FEEAKNAMNAGADIVMCDNLSVLETKEIAAYRD 224 (273)
T ss_dssp HHHHHHHGGGSC-TTCCEEEEESS--HHHHHHHHHHTCSEEEEETCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCC-CCceEEEEcCC--HHHHHHHHHcCCCEEEECCCCHHHHHHHHHHhh
Confidence 567788887654 23466665433 366788999999999899999999988777654
No 362
>1o2d_A Alcohol dehydrogenase, iron-containing; TM0920, structural genomics, JCSG, PSI, protein structure initiative; HET: MSE NAP TRS; 1.30A {Thermotoga maritima} SCOP: e.22.1.2 PDB: 1vhd_A*
Probab=38.64 E-value=86 Score=26.49 Aligned_cols=65 Identities=15% Similarity=0.179 Sum_probs=38.5
Q ss_pred cEEEEEeCCHH-----HHHHHHHHHhhcCCEEEEEC------CHH---HHHHHhhhhhhhhccCCCCCcccEEEEcCCCC
Q 026776 30 VHVLAVDDSFV-----DRKVIERLLTISSCKVTAVD------SGR---RALQFLGLDEEQSINGFDGLKVDLIITDYCMP 95 (233)
Q Consensus 30 ~~ILIVddd~~-----~~~~l~~~L~~~g~~v~~a~------~~~---~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp 95 (233)
-++|||-|... ..+.+...|+..|+.+..+. +.+ ++.+.+ ....+|+||- +.
T Consensus 41 ~~~liVtd~~~~~~~g~~~~v~~~L~~~g~~~~~~~~~~~~p~~~~v~~~~~~~-----------~~~~~d~IIa---vG 106 (371)
T 1o2d_A 41 KRALVVTGKSSSKKNGSLDDLKKLLDETEISYEIFDEVEENPSFDNVMKAVERY-----------RNDSFDFVVG---LG 106 (371)
T ss_dssp SEEEEEEESSGGGTSSHHHHHHHHHHHTTCEEEEEEEECSSCBHHHHHHHHHHH-----------TTSCCSEEEE---EE
T ss_pred CEEEEEECchHHhhccHHHHHHHHHHHcCCeEEEeCCccCCCCHHHHHHHHHHH-----------HhcCCCEEEE---eC
Confidence 47888877622 34667777877787665442 333 333433 4457898873 34
Q ss_pred CCCHHHHHHHHhc
Q 026776 96 GMTGYELLKKIKD 108 (233)
Q Consensus 96 ~~~g~~ll~~Lr~ 108 (233)
+..-+++.+.+..
T Consensus 107 GGsv~D~AK~iA~ 119 (371)
T 1o2d_A 107 GGSPMDFAKAVAV 119 (371)
T ss_dssp SHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHH
Confidence 5555666665544
No 363
>4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens}
Probab=38.63 E-value=1.8e+02 Score=24.48 Aligned_cols=112 Identities=13% Similarity=0.080 Sum_probs=58.6
Q ss_pred CCCCcEEEEEeCCHHHHHHHHHHHhhcCCEEEEECCHHHHHHHhhhhh-------hhhccCCCCCcccEEEEcCCCCCCC
Q 026776 26 DTEEVHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDE-------EQSINGFDGLKVDLIITDYCMPGMT 98 (233)
Q Consensus 26 ~~~~~~ILIVddd~~~~~~l~~~L~~~g~~v~~a~~~~~al~~l~~~~-------~~~~~~~~~~~~DlvllD~~mp~~~ 98 (233)
.++.++|.||.-- .....+...|...|++|..++-..+..+.+...+ .+... ....+|+||+-+ |...
T Consensus 19 Mm~~mkIgiIGlG-~mG~~~A~~L~~~G~~V~v~dr~~~~~~~l~~~g~~~~~s~~e~~~--~a~~~DvVi~~v--p~~~ 93 (358)
T 4e21_A 19 YFQSMQIGMIGLG-RMGADMVRRLRKGGHECVVYDLNVNAVQALEREGIAGARSIEEFCA--KLVKPRVVWLMV--PAAV 93 (358)
T ss_dssp ---CCEEEEECCS-HHHHHHHHHHHHTTCEEEEECSCHHHHHHHHTTTCBCCSSHHHHHH--HSCSSCEEEECS--CGGG
T ss_pred hhcCCEEEEECch-HHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHCCCEEeCCHHHHHh--cCCCCCEEEEeC--CHHH
Confidence 3456899999754 4566777788888999988875555444432211 00000 012359999865 3335
Q ss_pred HHHHHHHHhccCCCCCCcEEEEeCCCcH---HHHHHHH-HcCCceEEeCCC
Q 026776 99 GYELLKKIKDSSALREIPVVIMSSENIL---ARIDRCL-EDGAEDFIVKPV 145 (233)
Q Consensus 99 g~~ll~~Lr~~~~~~~~piIvlt~~~~~---~~~~~al-~~Ga~dyL~KP~ 145 (233)
-.++++.|...-. .-.+|+-.+.... ....+.+ +.|+ .|+.-|+
T Consensus 94 v~~vl~~l~~~l~--~g~iiId~st~~~~~~~~~~~~l~~~g~-~~vdapV 141 (358)
T 4e21_A 94 VDSMLQRMTPLLA--ANDIVIDGGNSHYQDDIRRADQMRAQGI-TYVDVGT 141 (358)
T ss_dssp HHHHHHHHGGGCC--TTCEEEECSSCCHHHHHHHHHHHHTTTC-EEEEEEE
T ss_pred HHHHHHHHHhhCC--CCCEEEeCCCCChHHHHHHHHHHHHCCC-EEEeCCC
Confidence 5566777755322 2334444444332 2223333 3344 4665554
No 364
>1h7n_A 5-aminolaevulinic acid dehydratase; lyase, aldolase, TIM barrel, tetrapyrrole synthesis; HET: SHF; 1.6A {Saccharomyces cerevisiae} SCOP: c.1.10.3 PDB: 1h7p_A* 1h7r_A* 1ohl_A* 1qml_A 1qnv_A 1w31_A* 1h7o_A* 1eb3_A* 1gjp_A* 1ylv_A* 1aw5_A
Probab=38.32 E-value=44 Score=28.20 Aligned_cols=66 Identities=18% Similarity=0.230 Sum_probs=46.3
Q ss_pred CHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCCCCCHHHHHHHHhccCCCCCCcEEEEeCCCcHHHHHHHHHcCCce
Q 026776 61 SGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAED 139 (233)
Q Consensus 61 ~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp~~~g~~ll~~Lr~~~~~~~~piIvlt~~~~~~~~~~al~~Ga~d 139 (233)
|..||+..+..+-+ +..|+|++- |++.=+++++.+|+..+ .+|+.++--++....+..|.+.|..|
T Consensus 241 N~~EAlre~~~Di~--------EGAD~vMVK---Pal~YLDIi~~vk~~~p--~~P~aaYqVSGEYAMikaAa~~GwiD 306 (342)
T 1h7n_A 241 GRGLARRALERDMS--------EGADGIIVK---PSTFYLDIMRDASEICK--DLPICAYHVSGEYAMLHAAAEKGVVD 306 (342)
T ss_dssp CHHHHHHHHHHHHH--------TTCSEEEEE---SSGGGHHHHHHHHHHTT--TSCEEEEECHHHHHHHHHHHHTTSSC
T ss_pred CHHHHHHHHHhhHH--------hCCCeEEEe---cCccHHHHHHHHHHhcc--CCCeEEEEcCcHHHHHHHHHHcCCcc
Confidence 56677766554422 347999887 66667889999998765 89999887666666666666666443
No 365
>1vgv_A UDP-N-acetylglucosamine 2-epimerase; structural genomics, isomerase; HET: UD1; 2.31A {Escherichia coli} SCOP: c.87.1.3 PDB: 1f6d_A*
Probab=38.21 E-value=1.6e+02 Score=23.93 Aligned_cols=40 Identities=15% Similarity=0.151 Sum_probs=26.5
Q ss_pred CCcEEEEeCCCcHHHHHHHHHcCCceEEeCCCCHHHHHHHHHHHh
Q 026776 114 EIPVVIMSSENILARIDRCLEDGAEDFIVKPVKLSDVKRIKDYLT 158 (233)
Q Consensus 114 ~~piIvlt~~~~~~~~~~al~~Ga~dyL~KP~~~~eL~~~~~~l~ 158 (233)
.+|+|+........ +.++.| .+++..+ +.++|.+.+..+.
T Consensus 301 G~PvI~~~~~~~~~---e~v~~g-~g~lv~~-d~~~la~~i~~ll 340 (384)
T 1vgv_A 301 GKPVLVMRDTTERP---EAVTAG-TVRLVGT-DKQRIVEEVTRLL 340 (384)
T ss_dssp TCCEEEESSCCSCH---HHHHHT-SEEEECS-SHHHHHHHHHHHH
T ss_pred CCCEEEccCCCCcc---hhhhCC-ceEEeCC-CHHHHHHHHHHHH
Confidence 78888764312212 235668 8899988 8888877766654
No 366
>1p0k_A Isopentenyl-diphosphate delta-isomerase; terpene biosynthesis, dimethylallyl diphosphate, flavoprotein; 1.90A {Bacillus subtilis} SCOP: c.1.4.1 PDB: 1p0n_A*
Probab=38.15 E-value=61 Score=27.09 Aligned_cols=46 Identities=11% Similarity=0.089 Sum_probs=36.4
Q ss_pred CCCHHHHHHHHhccCCCCCCcEEEEeCCCcHHHHHHHHHcCCceEEeC
Q 026776 96 GMTGYELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVK 143 (233)
Q Consensus 96 ~~~g~~ll~~Lr~~~~~~~~piIvlt~~~~~~~~~~al~~Ga~dyL~K 143 (233)
+....+.+..+++.. .++|||+-.+-.+.+++.+++.+||+.+..-
T Consensus 235 g~~~~~~l~~v~~~~--~~ipvia~GGI~~~~d~~k~l~~GAd~V~iG 280 (349)
T 1p0k_A 235 GISTAASLAEIRSEF--PASTMIASGGLQDALDVAKAIALGASCTGMA 280 (349)
T ss_dssp SCCHHHHHHHHHHHC--TTSEEEEESSCCSHHHHHHHHHTTCSEEEEC
T ss_pred CccHHHHHHHHHHhc--CCCeEEEECCCCCHHHHHHHHHcCCCEEEEc
Confidence 345677788887643 3789998888888999999999999998654
No 367
>1es9_A PAF-AH, platelet-activating factor acetylhydrolase IB gamma subunit; alpha/beta hydrolase fold; 1.30A {Bos taurus} SCOP: c.23.10.3 PDB: 1wab_A 1fxw_A 1bwr_A 1bwq_A 1bwp_A 3dt9_A* 3dt6_A* 3dt8_A*
Probab=38.13 E-value=1.3e+02 Score=22.78 Aligned_cols=86 Identities=13% Similarity=0.117 Sum_probs=48.7
Q ss_pred CCcEEEEEeCCHHHHHH----HHHHHhhcCCEEEE-EC---CHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCCCCC-
Q 026776 28 EEVHVLAVDDSFVDRKV----IERLLTISSCKVTA-VD---SGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMT- 98 (233)
Q Consensus 28 ~~~~ILIVddd~~~~~~----l~~~L~~~g~~v~~-a~---~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp~~~- 98 (233)
+..+|+++.|.-..... +...|.. +.+.- .- +..+.+..+... .+....+|+|++-+...+..
T Consensus 37 ~~~~i~~~GDSit~g~~~~~~~~~~l~~--~~v~n~g~~G~t~~~~~~~~~~~------~l~~~~pd~vvi~~G~ND~~~ 108 (232)
T 1es9_A 37 KEPEVVFIGDSLVQLMHQCEIWRELFSP--LHALNFGIGGDSTQHVLWRLENG------ELEHIRPKIVVVWVGTNNHGH 108 (232)
T ss_dssp CCCSEEEEESHHHHTHHHHSCHHHHTGG--GCEEEEECTTCCHHHHHHHHHTT------TTTTCCCSEEEEECCTTCTTS
T ss_pred CCCCEEEEechHhhccCccccHHHHCCC--CceEEeecccccHHHHHHHHhcC------ccccCCCCEEEEEeecCCCCC
Confidence 45789999998765533 3444543 33322 22 333444444210 01235799999987666543
Q ss_pred --------HHHHHHHHhccCCCCCCcEEEEeCC
Q 026776 99 --------GYELLKKIKDSSALREIPVVIMSSE 123 (233)
Q Consensus 99 --------g~~ll~~Lr~~~~~~~~piIvlt~~ 123 (233)
-.++++.+++..+ ...|++++..
T Consensus 109 ~~~~~~~~l~~~i~~l~~~~p--~~~ii~~~~~ 139 (232)
T 1es9_A 109 TAEQVTGGIKAIVQLVNERQP--QARVVVLGLL 139 (232)
T ss_dssp CHHHHHHHHHHHHHHHHHHST--TCEEEEECCC
T ss_pred CHHHHHHHHHHHHHHHHHHCC--CCeEEEecCC
Confidence 2346667776644 6778877654
No 368
>4gi5_A Quinone reductase; protein structure initiative, FAD bound, structural genomics, PSI-biology; HET: FAD; 1.75A {Klebsiella pneumoniae subsp}
Probab=38.02 E-value=32 Score=28.22 Aligned_cols=35 Identities=17% Similarity=0.147 Sum_probs=21.2
Q ss_pred CCCCcEEEEEeCCHH----H---HHHHHHHHhhcCCEEEEEC
Q 026776 26 DTEEVHVLAVDDSFV----D---RKVIERLLTISSCKVTAVD 60 (233)
Q Consensus 26 ~~~~~~ILIVddd~~----~---~~~l~~~L~~~g~~v~~a~ 60 (233)
.++.||||||-.+|. + .+.+.+.+++.|++|...+
T Consensus 19 ~m~~MKiLII~aHP~~~S~n~aL~~~~~~~l~~~G~eV~v~D 60 (280)
T 4gi5_A 19 YFQSMKVLLIYAHPEPRSLNGALKNFAIRHLQQAGHEVQVSD 60 (280)
T ss_dssp ---CCEEEEEECCSCTTSHHHHHHHHHHHHHHHTTCEEEEEE
T ss_pred hhhCCeEEEEEeCCCCccHHHHHHHHHHHHHHHCCCeEEEEE
Confidence 367899999977653 2 2333444567788887653
No 369
>3bwc_A Spermidine synthase; SAM, SGPP, structura genomics, PSI, protein structure initiative, structural GEN pathogenic protozoa consortium; HET: MSE SAM; 2.30A {Trypanosoma cruzi} PDB: 3bwb_A*
Probab=37.94 E-value=1.4e+02 Score=24.28 Aligned_cols=68 Identities=15% Similarity=0.052 Sum_probs=34.4
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhc-----CCEE-EEECCHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCCCCCH----
Q 026776 30 VHVLAVDDSFVDRKVIERLLTIS-----SCKV-TAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTG---- 99 (233)
Q Consensus 30 ~~ILIVddd~~~~~~l~~~L~~~-----g~~v-~~a~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp~~~g---- 99 (233)
.+|..||-++...+..++.+... .-.+ ....++.+.+... ....||+|++|...+....
T Consensus 120 ~~v~~vDid~~~i~~a~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~-----------~~~~fDvIi~d~~~~~~~~~~l~ 188 (304)
T 3bwc_A 120 EHCDLVDIDGEVMEQSKQHFPQISRSLADPRATVRVGDGLAFVRQT-----------PDNTYDVVIIDTTDPAGPASKLF 188 (304)
T ss_dssp CEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHSS-----------CTTCEEEEEEECC---------C
T ss_pred CEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHHhc-----------cCCceeEEEECCCCccccchhhh
Confidence 46777777777776666655210 1112 2344554433211 1346999999976554211
Q ss_pred -HHHHHHHhc
Q 026776 100 -YELLKKIKD 108 (233)
Q Consensus 100 -~~ll~~Lr~ 108 (233)
.++++.++.
T Consensus 189 ~~~~l~~~~~ 198 (304)
T 3bwc_A 189 GEAFYKDVLR 198 (304)
T ss_dssp CHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 355665544
No 370
>1qap_A Quinolinic acid phosphoribosyltransferase; glycosyltransferase, NAD biosynthesis; HET: NTM; 2.80A {Salmonella typhimurium} SCOP: c.1.17.1 d.41.2.1
Probab=37.84 E-value=72 Score=26.33 Aligned_cols=54 Identities=15% Similarity=0.267 Sum_probs=38.9
Q ss_pred HHHHHHHhccCCCCCCcEEEEeCCCcHHHHHHHHHcCCceEEeCCCCHHHHHHHHHHH
Q 026776 100 YELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVKLSDVKRIKDYL 157 (233)
Q Consensus 100 ~~ll~~Lr~~~~~~~~piIvlt~~~~~~~~~~al~~Ga~dyL~KP~~~~eL~~~~~~l 157 (233)
.+.++..|+..+ ..+|++-+.. .+++.+++++|+|.+.+-.++++++..+++.+
T Consensus 196 ~~ai~~~r~~~~--~~kI~vev~t--lee~~eA~~aGaD~I~ld~~~~e~l~~~v~~~ 249 (296)
T 1qap_A 196 RQAVEKAFWLHP--DVPVEVEVEN--LDELDDALKAGADIIMLDNFNTDQMREAVKRV 249 (296)
T ss_dssp HHHHHHHHHHST--TSCEEEEESS--HHHHHHHHHTTCSEEEESSCCHHHHHHHHHTT
T ss_pred HHHHHHHHHhCC--CCcEEEEeCC--HHHHHHHHHcCCCEEEECCCCHHHHHHHHHHh
Confidence 355667776554 3366665543 36678899999999999999999998776543
No 371
>4hkt_A Inositol 2-dehydrogenase; structural genomics, nysgrc, PSI-biology, NEW YORK structura genomics research consortium, oxidoreductase; HET: MSE; 2.00A {Sinorhizobium meliloti}
Probab=37.83 E-value=1.6e+02 Score=23.88 Aligned_cols=105 Identities=14% Similarity=0.129 Sum_probs=56.4
Q ss_pred CcEEEEEeCCHHHHHHHHHHHhhcCCEEEE-ECCHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCCCCCHHHHHHHHh
Q 026776 29 EVHVLAVDDSFVDRKVIERLLTISSCKVTA-VDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKKIK 107 (233)
Q Consensus 29 ~~~ILIVddd~~~~~~l~~~L~~~g~~v~~-a~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp~~~g~~ll~~Lr 107 (233)
+++|.||.--..-...+..+.+..++++.. ++...+..+.+.. .+.+-. .+--+++ .
T Consensus 3 ~~~vgiiG~G~~g~~~~~~l~~~~~~~l~av~d~~~~~~~~~~~------------~~~~~~-------~~~~~~l---~ 60 (331)
T 4hkt_A 3 TVRFGLLGAGRIGKVHAKAVSGNADARLVAVADAFPAAAEAIAG------------AYGCEV-------RTIDAIE---A 60 (331)
T ss_dssp CEEEEEECCSHHHHHHHHHHHHCTTEEEEEEECSSHHHHHHHHH------------HTTCEE-------CCHHHHH---H
T ss_pred ceEEEEECCCHHHHHHHHHHhhCCCcEEEEEECCCHHHHHHHHH------------HhCCCc-------CCHHHHh---c
Confidence 478999987665554444444434777764 4433333332211 112211 1222222 2
Q ss_pred ccCCCCCCcEEEEeCC--CcHHHHHHHHHcCCceEEeCCC--CHHHHHHHHHHHhh
Q 026776 108 DSSALREIPVVIMSSE--NILARIDRCLEDGAEDFIVKPV--KLSDVKRIKDYLTR 159 (233)
Q Consensus 108 ~~~~~~~~piIvlt~~--~~~~~~~~al~~Ga~dyL~KP~--~~~eL~~~~~~l~~ 159 (233)
. + .+-+|+++.. ...+.+..++++|..=|+.||+ +.++..++.+...+
T Consensus 61 ~--~--~~D~V~i~tp~~~h~~~~~~al~~gk~v~~EKP~~~~~~~~~~l~~~a~~ 112 (331)
T 4hkt_A 61 A--A--DIDAVVICTPTDTHADLIERFARAGKAIFCEKPIDLDAERVRACLKVVSD 112 (331)
T ss_dssp C--T--TCCEEEECSCGGGHHHHHHHHHHTTCEEEECSCSCSSHHHHHHHHHHHHH
T ss_pred C--C--CCCEEEEeCCchhHHHHHHHHHHcCCcEEEecCCCCCHHHHHHHHHHHHH
Confidence 1 1 3444444433 3456778899999999999994 46666666665544
No 372
>1h6d_A Precursor form of glucose-fructose oxidoreductase; protein translocation, periplasmic oxidoreductase, signal peptide, ligand binding,; HET: NDP; 2.05A {Zymomonas mobilis} SCOP: c.2.1.3 d.81.1.5 PDB: 1h6b_A* 1h6a_A* 1h6c_A* 1ryd_A* 1rye_A* 1ofg_A* 1evj_A*
Probab=37.74 E-value=33 Score=29.76 Aligned_cols=46 Identities=22% Similarity=0.262 Sum_probs=29.5
Q ss_pred CCcEEEEeCCC--cHHHHHHHHHcCCceEEeCCC--CHHHHHHHHHHHhh
Q 026776 114 EIPVVIMSSEN--ILARIDRCLEDGAEDFIVKPV--KLSDVKRIKDYLTR 159 (233)
Q Consensus 114 ~~piIvlt~~~--~~~~~~~al~~Ga~dyL~KP~--~~~eL~~~~~~l~~ 159 (233)
.+-+|+++... ..+.+..++++|..=|+.||+ +.++..++++...+
T Consensus 150 ~vD~V~iatp~~~h~~~~~~al~aGk~Vl~EKPla~~~~e~~~l~~~a~~ 199 (433)
T 1h6d_A 150 KIDAVYIILPNSLHAEFAIRAFKAGKHVMCEKPMATSVADCQRMIDAAKA 199 (433)
T ss_dssp TCCEEEECSCGGGHHHHHHHHHHTTCEEEECSSCCSSHHHHHHHHHHHHH
T ss_pred CCCEEEEcCCchhHHHHHHHHHHCCCcEEEcCCCCCCHHHHHHHHHHHHH
Confidence 34455554432 356677889999888899996 45566566555443
No 373
>1tqx_A D-ribulose-5-phosphate 3-epimerase, putative; structural genomics, protein structure initiative, PSI; 2.00A {Plasmodium falciparum} SCOP: c.1.2.2
Probab=37.71 E-value=74 Score=25.07 Aligned_cols=57 Identities=9% Similarity=0.191 Sum_probs=39.0
Q ss_pred cccEEEEcCCCCCCCH-------HHHHHHHhccCCCCCCcEEEEeCCCcHHHHHHHHHcCCceEEeC
Q 026776 84 KVDLIITDYCMPGMTG-------YELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVK 143 (233)
Q Consensus 84 ~~DlvllD~~mp~~~g-------~~ll~~Lr~~~~~~~~piIvlt~~~~~~~~~~al~~Ga~dyL~K 143 (233)
.+|+|++-..-|+.+| ++-++++|+... ..+| .+.+.-+.+.+..+.++||+-++.=
T Consensus 138 ~~D~VlvmsV~pGf~gq~f~~~~l~ki~~lr~~~~--~~~I-~VdGGI~~~ti~~~~~aGAd~~V~G 201 (227)
T 1tqx_A 138 LINTVLVMTVEPGFGGQSFMHDMMGKVSFLRKKYK--NLNI-QVDGGLNIETTEISASHGANIIVAG 201 (227)
T ss_dssp CCSEEEEESSCTTCSSCCCCGGGHHHHHHHHHHCT--TCEE-EEESSCCHHHHHHHHHHTCCEEEES
T ss_pred CcCEEEEeeeccCCCCcccchHHHHHHHHHHHhcc--CCeE-EEECCCCHHHHHHHHHcCCCEEEEe
Confidence 3788877665565544 566777776543 4444 4556666788889999999988654
No 374
>4em8_A Ribose 5-phosphate isomerase B; ssgcid, seattle structural genomics center for infectious DI niaid; 1.95A {Anaplasma phagocytophilum}
Probab=37.63 E-value=61 Score=23.96 Aligned_cols=35 Identities=17% Similarity=0.117 Sum_probs=28.0
Q ss_pred CCCCcEEEEEeCCH--HHHHHHHHHHhhcCCEEEEEC
Q 026776 26 DTEEVHVLAVDDSF--VDRKVIERLLTISSCKVTAVD 60 (233)
Q Consensus 26 ~~~~~~ILIVddd~--~~~~~l~~~L~~~g~~v~~a~ 60 (233)
++..++|.|--|+. ...+.+.++|++.||+|.-+.
T Consensus 4 ~m~~mkI~igsDhaG~~lK~~i~~~L~~~G~eV~D~G 40 (148)
T 4em8_A 4 SMVVKRVFLSSDHAGVELRLFLSAYLRDLGCEVFDCG 40 (148)
T ss_dssp CCSCSEEEEEECGGGHHHHHHHHHHHHHTTCEEEECC
T ss_pred cceeeEEEEEECchhHHHHHHHHHHHHHCCCEEEEeC
Confidence 34457899998985 667789999999999998764
No 375
>3vzx_A Heptaprenylglyceryl phosphate synthase; biosynthesis, prenyltransferases, enzyme catalysis, transfer; 1.54A {Bacillus subtilis} PDB: 3vzy_A* 3vzz_A* 3w00_A* 1viz_A
Probab=37.24 E-value=90 Score=24.73 Aligned_cols=57 Identities=12% Similarity=0.105 Sum_probs=42.3
Q ss_pred cccEEEEcCCCCCCCHHHHHHHHhccCCCCCCcEEEEeCCCcHHHHHHHHHcCCceEEeCC
Q 026776 84 KVDLIITDYCMPGMTGYELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKP 144 (233)
Q Consensus 84 ~~DlvllD~~mp~~~g~~ll~~Lr~~~~~~~~piIvlt~~~~~~~~~~al~~Ga~dyL~KP 144 (233)
..++|.+|. .......++++++++... .+|+++=-+=.+.+.+.+++ .|||..+.-.
T Consensus 153 g~~~VYld~-sG~~~~~~~i~~i~~~~~--~~Pv~vGGGI~t~e~a~~~~-~gAD~VVVGS 209 (228)
T 3vzx_A 153 QLPIFYLEY-SGVLGDIEAVKKTKAVLE--TSTLFYGGGIKDAETAKQYA-EHADVIVVGN 209 (228)
T ss_dssp TCSEEEEEC-TTSCCCHHHHHHHHHHCS--SSEEEEESSCCSHHHHHHHH-TTCSEEEECT
T ss_pred CCCEEEecC-CCCcCCHHHHHHHHHhcC--CCCEEEeCCCCCHHHHHHHH-hCCCEEEECh
Confidence 368899988 333335889999987532 57888766667788887777 7999998865
No 376
>2r6o_A Putative diguanylate cyclase/phosphodiesterase (G domains); ggdef and EAL domains, structural genomics, PSI-2; 1.80A {Thiobacillus denitrificans} PDB: 3ii8_A* 3n3t_A*
Probab=37.21 E-value=33 Score=28.09 Aligned_cols=97 Identities=13% Similarity=0.186 Sum_probs=57.3
Q ss_pred HHHhhcCCEEEE--ECCHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCC----CC-CCHHHHHHHHhccCCCCCCcEEE
Q 026776 47 RLLTISSCKVTA--VDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCM----PG-MTGYELLKKIKDSSALREIPVVI 119 (233)
Q Consensus 47 ~~L~~~g~~v~~--a~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~m----p~-~~g~~ll~~Lr~~~~~~~~piIv 119 (233)
..|+..|+.+.. +.+|...+..+ ...++|.|=+|-.+ .. .....+++.|-.....-.+.+ +
T Consensus 170 ~~Lr~~G~~ialDDFGtG~ssl~~L-----------~~l~~d~iKID~sfv~~i~~~~~~~~iv~~ii~la~~lg~~v-v 237 (294)
T 2r6o_A 170 DALRARGVRLALDDFGTGYSSLSYL-----------SQLPFHGLKIDQSFVRKIPAHPSETQIVTTILALARGLGMEV-V 237 (294)
T ss_dssp HHHHHHTCEEEEEEETSSCBCHHHH-----------HHSCCCEEEECHHHHTTTTTSHHHHHHHHHHHHHHHHTTCEE-E
T ss_pred HHHHHCCCEEEEECCCCCchhHHHH-----------HhCCCCEEEECHHHHhhhhcChHHHHHHHHHHHHHHHCCCEE-E
Confidence 345677876654 66655555555 34578999988432 21 123344444432211113333 3
Q ss_pred EeCCCcHHHHHHHHHcCCce----EEeCCCCHHHHHHHHH
Q 026776 120 MSSENILARIDRCLEDGAED----FIVKPVKLSDVKRIKD 155 (233)
Q Consensus 120 lt~~~~~~~~~~al~~Ga~d----yL~KP~~~~eL~~~~~ 155 (233)
.-+-.+.+....+.+.|++. |+.||...+++...+.
T Consensus 238 AEGVEt~~q~~~l~~lG~d~~QGy~~~~P~~~~~~~~~l~ 277 (294)
T 2r6o_A 238 AEGIETAQQYAFLRDRGCEFGQGNLMSTPQAADAFASLLD 277 (294)
T ss_dssp ECCCCSHHHHHHHHHTTCCEECSTTTCCCEEHHHHHHHHH
T ss_pred EecCCcHHHHHHHHHcCCCEEEcCccCCCCCHHHHHHHHH
Confidence 44555677777888899875 5889999888866543
No 377
>1pv8_A Delta-aminolevulinic acid dehydratase; porphobilinogen synthase, tetrapyrrole biosynthesis, reactio intermediate, lyase; HET: PB1; 2.20A {Homo sapiens} SCOP: c.1.10.3 PDB: 1e51_A* 2z0i_A 2z1b_A
Probab=37.01 E-value=43 Score=28.10 Aligned_cols=66 Identities=21% Similarity=0.382 Sum_probs=47.4
Q ss_pred CHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCCCCCHHHHHHHHhccCCCCCCcEEEEeCCCcHHHHHHHHHcCCce
Q 026776 61 SGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAED 139 (233)
Q Consensus 61 ~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp~~~g~~ll~~Lr~~~~~~~~piIvlt~~~~~~~~~~al~~Ga~d 139 (233)
|..||+..+..+-+ +..|+|++- |++.=+++++.+|+..+ .+|+.++--++....+..|.+.|..|
T Consensus 230 N~~EAlre~~~Di~--------EGAD~vMVK---Pal~YLDIi~~vk~~~p--~~P~aaYqVSGEYAMikaAa~~GwiD 295 (330)
T 1pv8_A 230 ARGLALRAVDRDVR--------EGADMLMVK---PGMPYLDIVREVKDKHP--DLPLAVYHVSGEFAMLWHGAQAGAFD 295 (330)
T ss_dssp CHHHHHHHHHHHHH--------TTCSBEEEE---SCGGGHHHHHHHHHHST--TSCEEEEECHHHHHHHHHHHHTTSSC
T ss_pred CHHHHHHHHHhhHH--------hCCceEEEe---cCccHHHHHHHHHHhcC--CCCeEEEEcCcHHHHHHHHHHcCCcc
Confidence 66777776655432 346899886 66677889999998765 89999987666666666666666543
No 378
>3lp8_A Phosphoribosylamine-glycine ligase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ALS collaborative crystallography; 2.15A {Ehrlichia chaffeensis}
Probab=36.97 E-value=57 Score=28.32 Aligned_cols=44 Identities=5% Similarity=0.116 Sum_probs=16.8
Q ss_pred eeeeccccccCCCCCCCCCcEEEEEeCCHHHHHHHHHHHhhcCC
Q 026776 11 RLISDEIDGFDLSPSDTEEVHVLAVDDSFVDRKVIERLLTISSC 54 (233)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~ILIVddd~~~~~~l~~~L~~~g~ 54 (233)
|++++-+...+-.......++|||+........+...+.++.++
T Consensus 3 ~~~~~~~~~~~~~~~~p~~m~ilvlG~ggre~ala~~l~~s~~v 46 (442)
T 3lp8_A 3 HHHHHHMGTLEAQTQGPGSMNVLVIGSGGREHSMLHHIRKSTLL 46 (442)
T ss_dssp -----------------CCEEEEEEECSHHHHHHHHHHTTCTTE
T ss_pred ccccccccceecccCCCCCCEEEEECCChHHHHHHHHHHhCCCC
Confidence 44555555554444444678999999985544444444344343
No 379
>2bw0_A 10-FTHFDH, 10-formyltetrahydrofolate dehydrogenase; nucleotide biosynthesis, oxidoreductase; 1.7A {Homo sapiens} SCOP: b.46.1.1 c.65.1.1 PDB: 2cfi_A* 1s3i_A
Probab=36.95 E-value=52 Score=27.59 Aligned_cols=31 Identities=13% Similarity=0.235 Sum_probs=18.4
Q ss_pred CCCcEEEEEeCCHHHHHHHHHHHhhcCCEEEE
Q 026776 27 TEEVHVLAVDDSFVDRKVIERLLTISSCKVTA 58 (233)
Q Consensus 27 ~~~~~ILIVddd~~~~~~l~~~L~~~g~~v~~ 58 (233)
+.++||+++.........+..++. .+++|..
T Consensus 20 ~~~mrIvf~G~~~fa~~~L~~L~~-~~~~i~~ 50 (329)
T 2bw0_A 20 FQSMKIAVIGQSLFGQEVYCHLRK-EGHEVVG 50 (329)
T ss_dssp -CCCEEEEECCHHHHHHHHHHHHH-TTCEEEE
T ss_pred CCCCEEEEEcCcHHHHHHHHHHHH-CCCeEEE
Confidence 455899999754433345666554 4676643
No 380
>2b2c_A Spermidine synthase; beta-alpha, transferase; 2.50A {Caenorhabditis elegans} SCOP: c.66.1.17
Probab=36.94 E-value=1.3e+02 Score=24.73 Aligned_cols=55 Identities=22% Similarity=0.146 Sum_probs=34.2
Q ss_pred CcEEEEEeCCHHHHHHHHHHHhhc--C---CEEE-EECCHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCC
Q 026776 29 EVHVLAVDDSFVDRKVIERLLTIS--S---CKVT-AVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMP 95 (233)
Q Consensus 29 ~~~ILIVddd~~~~~~l~~~L~~~--g---~~v~-~a~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp 95 (233)
..+|..||-++...+..++.+... + -.+. ...++.+.+.. ....||+|++|...|
T Consensus 132 ~~~v~~vDid~~~i~~Ar~~~~~~~~~~~~~rv~~~~~D~~~~l~~------------~~~~fD~Ii~d~~~~ 192 (314)
T 2b2c_A 132 VEKVTMCEIDEMVIDVAKKFLPGMSCGFSHPKLDLFCGDGFEFLKN------------HKNEFDVIITDSSDP 192 (314)
T ss_dssp CCEEEEECSCHHHHHHHHHHCTTTSGGGGCTTEEEECSCHHHHHHH------------CTTCEEEEEECCC--
T ss_pred CCEEEEEECCHHHHHHHHHHHHHhccccCCCCEEEEEChHHHHHHh------------cCCCceEEEEcCCCC
Confidence 357888888888888888777542 1 1232 34555554432 134699999987543
No 381
>2esr_A Methyltransferase; structural genomics, hypothetical protein, streptococcus PYO PSI, protein structure initiative; HET: GLC; 1.80A {Streptococcus pyogenes} SCOP: c.66.1.46
Probab=36.84 E-value=1.1e+02 Score=22.00 Aligned_cols=66 Identities=15% Similarity=0.179 Sum_probs=41.3
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhcCC--EEEE-ECCHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCCCCCHHHHHHHH
Q 026776 30 VHVLAVDDSFVDRKVIERLLTISSC--KVTA-VDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKKI 106 (233)
Q Consensus 30 ~~ILIVddd~~~~~~l~~~L~~~g~--~v~~-a~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp~~~g~~ll~~L 106 (233)
.+|..+|-++...+..++.++..+. .+.. ..+..+.+... ...+|+|++|.........++++.+
T Consensus 55 ~~v~~vD~~~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~------------~~~fD~i~~~~~~~~~~~~~~~~~l 122 (177)
T 2esr_A 55 SAAVLVEKNRKAQAIIQDNIIMTKAENRFTLLKMEAERAIDCL------------TGRFDLVFLDPPYAKETIVATIEAL 122 (177)
T ss_dssp CEEEEECCCHHHHHHHHHHHHTTTCGGGEEEECSCHHHHHHHB------------CSCEEEEEECCSSHHHHHHHHHHHH
T ss_pred CEEEEEECCHHHHHHHHHHHHHcCCCCceEEEECcHHHhHHhh------------cCCCCEEEECCCCCcchHHHHHHHH
Confidence 5799999999888888888877664 2433 44555544332 2359999998533112233455555
Q ss_pred h
Q 026776 107 K 107 (233)
Q Consensus 107 r 107 (233)
.
T Consensus 123 ~ 123 (177)
T 2esr_A 123 A 123 (177)
T ss_dssp H
T ss_pred H
Confidence 4
No 382
>3bbl_A Regulatory protein of LACI family; protein structure initiative II, PSI-II, NYSGXRC, transcript regulator, periplasmic binding protein; 2.35A {Chloroflexus aggregans}
Probab=36.84 E-value=1.3e+02 Score=23.44 Aligned_cols=17 Identities=12% Similarity=-0.054 Sum_probs=9.3
Q ss_pred HHHHHHHhhcCCEEEEE
Q 026776 43 KVIERLLTISSCKVTAV 59 (233)
Q Consensus 43 ~~l~~~L~~~g~~v~~a 59 (233)
..+++.+++.||.+..+
T Consensus 28 ~gi~~~a~~~g~~~~~~ 44 (287)
T 3bbl_A 28 SSMVREAGAVNYFVLPF 44 (287)
T ss_dssp HHHHHHHHHTTCEEEEC
T ss_pred HHHHHHHHHcCCEEEEE
Confidence 34444555667666554
No 383
>1v4v_A UDP-N-acetylglucosamine 2-epimerase; UDP-GLCNAC, two domains, homodimer, riken structural genomics/proteomics initiative, RSGI; HET: MSE; 1.80A {Thermus thermophilus} SCOP: c.87.1.3
Probab=36.71 E-value=1.7e+02 Score=23.77 Aligned_cols=58 Identities=21% Similarity=0.176 Sum_probs=32.7
Q ss_pred ccEEEEcCCCCCCCHHHHHHHHhccCCCCCCcEEEEeCCCcHHHHHHHHHcCCceEEeCCCCHHHHHHHHHHHh
Q 026776 85 VDLIITDYCMPGMTGYELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVKLSDVKRIKDYLT 158 (233)
Q Consensus 85 ~DlvllD~~mp~~~g~~ll~~Lr~~~~~~~~piIvlt~~~~~~~~~~al~~Ga~dyL~KP~~~~eL~~~~~~l~ 158 (233)
.|++++.- .|+ +++.+-. .+|+|+........+ .++.| .+++.. .+.++|.+.+..+.
T Consensus 275 ad~~v~~S-----~g~-~lEA~a~-----G~PvI~~~~~~~~~~---~~~~g-~g~lv~-~d~~~la~~i~~ll 332 (376)
T 1v4v_A 275 SLLLVTDS-----GGL-QEEGAAL-----GVPVVVLRNVTERPE---GLKAG-ILKLAG-TDPEGVYRVVKGLL 332 (376)
T ss_dssp EEEEEESC-----HHH-HHHHHHT-----TCCEEECSSSCSCHH---HHHHT-SEEECC-SCHHHHHHHHHHHH
T ss_pred CcEEEECC-----cCH-HHHHHHc-----CCCEEeccCCCcchh---hhcCC-ceEECC-CCHHHHHHHHHHHH
Confidence 56776542 344 4455432 778887543232222 24555 467764 48888877666554
No 384
>2ho3_A Oxidoreductase, GFO/IDH/MOCA family; streptococcus pneumonia reductive methylation, structural genomics, PSI-2, protein initiative; HET: MLY; 2.00A {Streptococcus pneumoniae} PDB: 2ho5_A
Probab=36.67 E-value=1.7e+02 Score=23.71 Aligned_cols=46 Identities=17% Similarity=0.254 Sum_probs=31.1
Q ss_pred CCcEEEEeCCC--cHHHHHHHHHcCCceEEeCCC--CHHHHHHHHHHHhh
Q 026776 114 EIPVVIMSSEN--ILARIDRCLEDGAEDFIVKPV--KLSDVKRIKDYLTR 159 (233)
Q Consensus 114 ~~piIvlt~~~--~~~~~~~al~~Ga~dyL~KP~--~~~eL~~~~~~l~~ 159 (233)
.+-+|+++... ..+.+..++++|..=|+.||+ +.++..++.+...+
T Consensus 62 ~~D~V~i~tp~~~h~~~~~~al~~gk~V~~EKP~~~~~~~~~~l~~~a~~ 111 (325)
T 2ho3_A 62 SFDLVYIASPNSLHFAQAKAALSAGKHVILEKPAVSQPQEWFDLIQTAEK 111 (325)
T ss_dssp SCSEEEECSCGGGHHHHHHHHHHTTCEEEEESSCCSSHHHHHHHHHHHHH
T ss_pred CCCEEEEeCChHHHHHHHHHHHHcCCcEEEecCCcCCHHHHHHHHHHHHH
Confidence 34455554433 356778899999988999997 56666666665544
No 385
>2o07_A Spermidine synthase; structural genomics, structural genomics consortium, SGC, transferase; HET: SPD MTA; 1.89A {Homo sapiens} SCOP: c.66.1.17 PDB: 2o06_A* 2o05_A* 2o0l_A* 3rw9_A*
Probab=36.66 E-value=93 Score=25.43 Aligned_cols=54 Identities=24% Similarity=0.194 Sum_probs=33.6
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhc-----CCEE-EEECCHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCC
Q 026776 30 VHVLAVDDSFVDRKVIERLLTIS-----SCKV-TAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMP 95 (233)
Q Consensus 30 ~~ILIVddd~~~~~~l~~~L~~~-----g~~v-~~a~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp 95 (233)
.+|..||-++...+..++.+... .-.+ ....++.+.+.. ....||+|++|...+
T Consensus 120 ~~v~~vDid~~~i~~ar~~~~~~~~~~~~~rv~v~~~Da~~~l~~------------~~~~fD~Ii~d~~~~ 179 (304)
T 2o07_A 120 ESVVQCEIDEDVIQVSKKFLPGMAIGYSSSKLTLHVGDGFEFMKQ------------NQDAFDVIITDSSDP 179 (304)
T ss_dssp CEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHHHT------------CSSCEEEEEEECC--
T ss_pred CEEEEEECCHHHHHHHHHHhHHhhcccCCCcEEEEECcHHHHHhh------------CCCCceEEEECCCCC
Confidence 57889998888888888776541 1122 234565554432 234699999997544
No 386
>1lst_A Lysine, arginine, ornithine-binding protein; amino-acid binding protein; HET: LYS; 1.80A {Salmonella typhimurium} SCOP: c.94.1.1 PDB: 2lao_A 1lag_E* 1lah_E 1laf_E 1hsl_A* 1hpb_P*
Probab=36.64 E-value=1.1e+02 Score=22.72 Aligned_cols=53 Identities=15% Similarity=0.068 Sum_probs=39.1
Q ss_pred CCCcEEEEEeCCHHHHHHHHHHHhhcCCEEEEECCHHHHHHHhhhhhhhhccCCCCCcccEEEEc
Q 026776 27 TEEVHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITD 91 (233)
Q Consensus 27 ~~~~~ILIVddd~~~~~~l~~~L~~~g~~v~~a~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD 91 (233)
.+..+|.++..... ...+...+...+..+..+.+..++++.+ ...+.|+++.|
T Consensus 109 L~g~~v~~~~g~~~-~~~l~~~~~~~~~~~~~~~~~~~~~~~l-----------~~G~vDa~~~~ 161 (239)
T 1lst_A 109 LKGKHVGVLQGSTQ-EAYANDNWRTKGVDVVAYANQDLIYSDL-----------TAGRLDAALQD 161 (239)
T ss_dssp HTTCEEEEETTSHH-HHHHHHHTGGGTCEEEEESSHHHHHHHH-----------HTTSCSEEEEE
T ss_pred hCCCEEEEEcCccH-HHHHHHhcccCCCeEEEcCCHHHHHHHH-----------HcCCCCEEEeC
Confidence 34567877766553 4455666655678899999999999998 45678999987
No 387
>2pt6_A Spermidine synthase; transferase, structural genomics consor SGC,dcadoMet complex; HET: S4M 1PG; 2.00A {Plasmodium falciparum} PDB: 2pss_A* 2pt9_A*
Probab=36.60 E-value=1.7e+02 Score=24.07 Aligned_cols=55 Identities=15% Similarity=0.092 Sum_probs=34.3
Q ss_pred CcEEEEEeCCHHHHHHHHHHHhhc-----CCEE-EEECCHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCC
Q 026776 29 EVHVLAVDDSFVDRKVIERLLTIS-----SCKV-TAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMP 95 (233)
Q Consensus 29 ~~~ILIVddd~~~~~~l~~~L~~~-----g~~v-~~a~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp 95 (233)
..+|..||-++...+..++.+... .-.+ ....++.+.+... ...||+|++|...|
T Consensus 140 ~~~v~~vDis~~~l~~ar~~~~~~~~~~~~~~v~~~~~D~~~~l~~~------------~~~fDvIi~d~~~p 200 (321)
T 2pt6_A 140 VENIDICEIDETVIEVSKIYFKNISCGYEDKRVNVFIEDASKFLENV------------TNTYDVIIVDSSDP 200 (321)
T ss_dssp CCEEEEEESCHHHHHHHHHHCTTTSGGGGSTTEEEEESCHHHHHHHC------------CSCEEEEEEECCCS
T ss_pred CCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEEccHHHHHhhc------------CCCceEEEECCcCC
Confidence 357888888888888877776541 1122 2345655544322 34699999997443
No 388
>3qvq_A Phosphodiesterase OLEI02445; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta hydrolase, hydrolase; HET: MSE G3P; 1.60A {Oleispira antarctica}
Probab=36.43 E-value=1.3e+02 Score=23.67 Aligned_cols=38 Identities=13% Similarity=0.149 Sum_probs=28.4
Q ss_pred HHHHHHhccCCCCCCcEEEEeCCCcHHHHHHHHHcCCceEEeC
Q 026776 101 ELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVK 143 (233)
Q Consensus 101 ~ll~~Lr~~~~~~~~piIvlt~~~~~~~~~~al~~Ga~dyL~K 143 (233)
++++.+++. ..++.+.|- .+.+...++++.|+|++++-
T Consensus 201 ~~v~~~~~~----G~~v~~WTv-n~~~~~~~l~~~GVdgIiTD 238 (252)
T 3qvq_A 201 QQVSDIKAA----GYKVLAFTI-NDESLALKLYNQGLDAVFSD 238 (252)
T ss_dssp HHHHHHHHT----TCEEEEECC-CCHHHHHHHHHTTCCEEEES
T ss_pred HHHHHHHHC----CCEEEEEcC-CCHHHHHHHHHcCCCEEEeC
Confidence 566666654 668888876 45677888999999999874
No 389
>2f6u_A GGGPS, (S)-3-O-geranylgeranylglyceryl phosphate synthase; non-canonical TIM-barrel, prenyltransferase, archaeal lipid synthesis, dimer; HET: CIT; 1.55A {Archaeoglobus fulgidus} SCOP: c.1.4.1 PDB: 2f6x_A*
Probab=36.30 E-value=69 Score=25.47 Aligned_cols=56 Identities=16% Similarity=0.172 Sum_probs=36.9
Q ss_pred cccEEEEcCCCC--CCCHHHHHHHHhccCCCCCCcEEEEeCCCcHHHHHHHHHcCCceEEeCCCCHHH
Q 026776 84 KVDLIITDYCMP--GMTGYELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVKLSD 149 (233)
Q Consensus 84 ~~DlvllD~~mp--~~~g~~ll~~Lr~~~~~~~~piIvlt~~~~~~~~~~al~~Ga~dyL~KP~~~~e 149 (233)
..|+|.+-.... ..+-+++++++|+ . .+|+|+++...+ .+..|+|++|.--+..++
T Consensus 33 GaD~IelG~S~g~t~~~~~~~v~~ir~--~--~~Pivl~~y~~n------~i~~gvDg~iipdLp~ee 90 (234)
T 2f6u_A 33 GTDAVMISGTQNVTYEKARTLIEKVSQ--Y--GLPIVVEPSDPS------NVVYDVDYLFVPTVLNSA 90 (234)
T ss_dssp TCSEEEECCCTTCCHHHHHHHHHHHTT--S--CCCEEECCSSCC------CCCCCSSEEEEEEETTBS
T ss_pred CCCEEEECCCCCCCHHHHHHHHHHhcC--C--CCCEEEecCCcc------hhhcCCCEEEEcccCCCC
Confidence 468888876321 1234667777775 2 899999987732 227899999986544433
No 390
>3orh_A Guanidinoacetate N-methyltransferase; structura genomics, structural genomics consortium, SGC; HET: SAH; 1.86A {Homo sapiens} PDB: 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*
Probab=36.01 E-value=98 Score=23.95 Aligned_cols=54 Identities=11% Similarity=-0.107 Sum_probs=38.6
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhcCCEEEE-ECCHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCC
Q 026776 30 VHVLAVDDSFVDRKVIERLLTISSCKVTA-VDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCM 94 (233)
Q Consensus 30 ~~ILIVddd~~~~~~l~~~L~~~g~~v~~-a~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~m 94 (233)
-++..||-++...+..++.....+..+.. ..+..+.+..+ ....||.|+.|...
T Consensus 84 ~~v~~id~~~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~-----------~~~~FD~i~~D~~~ 138 (236)
T 3orh_A 84 DEHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAPTL-----------PDGHFDGILYDTYP 138 (236)
T ss_dssp EEEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGGGS-----------CTTCEEEEEECCCC
T ss_pred cEEEEEeCCHHHHHHHHHHHhhCCCceEEEeehHHhhcccc-----------cccCCceEEEeeee
Confidence 46889999999999888888877765544 45555544333 44579999998643
No 391
>2bdq_A Copper homeostasis protein CUTC; alpha beta protein, structural genomics, PSI, protein structure initiative; 2.30A {Streptococcus agalactiae}
Probab=36.00 E-value=70 Score=25.36 Aligned_cols=94 Identities=15% Similarity=0.211 Sum_probs=57.2
Q ss_pred CCHHHHHHHHHHHhh-cCCEEEE------E--CCHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCCC---CCHHHHHH
Q 026776 37 DSFVDRKVIERLLTI-SSCKVTA------V--DSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPG---MTGYELLK 104 (233)
Q Consensus 37 dd~~~~~~l~~~L~~-~g~~v~~------a--~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp~---~~g~~ll~ 104 (233)
|.......+++++.. .|..++. + .+..++++++. ...++=||..=.-+. .+|++.++
T Consensus 101 dg~iD~~~~~~Li~~a~~~~vTFHRAFD~~~~~d~~~ale~L~-----------~lGv~rILTSG~~~~~~a~~g~~~L~ 169 (224)
T 2bdq_A 101 NNHIDTEAIEQLLPATQGLPLVFHMAFDVIPKSDQKKSIDQLV-----------ALGFTRILLHGSSNGEPIIENIKHIK 169 (224)
T ss_dssp TSSBCHHHHHHHHHHHTTCCEEECGGGGGSCTTTHHHHHHHHH-----------HTTCCEEEECSCSSCCCGGGGHHHHH
T ss_pred CCCcCHHHHHHHHHHhCCCeEEEECchhccCCcCHHHHHHHHH-----------HcCCCEEECCCCCCCCcHHHHHHHHH
Confidence 445556666666643 3555554 4 67788888883 346888888655444 68999999
Q ss_pred HHhccCCCCCCcEEEEeC-CCcHHHHHHHH-HcCCceEEeCC
Q 026776 105 KIKDSSALREIPVVIMSS-ENILARIDRCL-EDGAEDFIVKP 144 (233)
Q Consensus 105 ~Lr~~~~~~~~piIvlt~-~~~~~~~~~al-~~Ga~dyL~KP 144 (233)
+|.+... . .|.++.+ --..+.+...+ ..|+..|-...
T Consensus 170 ~Lv~~a~--~-ri~Im~GgGV~~~Ni~~l~~~tGv~e~H~s~ 208 (224)
T 2bdq_A 170 ALVEYAN--N-RIEIMVGGGVTAENYQYICQETGVKQAHGTR 208 (224)
T ss_dssp HHHHHHT--T-SSEEEECSSCCTTTHHHHHHHHTCCEEEETT
T ss_pred HHHHhhC--C-CeEEEeCCCCCHHHHHHHHHhhCCCEEcccc
Confidence 9966432 2 2333433 32333444444 57998886543
No 392
>3skv_A SSFX3; jelly roll, GDSL/SGNH fold, alpha/beta hydrolase fold, trans; 2.49A {Streptomyces SP}
Probab=35.98 E-value=1.2e+02 Score=25.82 Aligned_cols=39 Identities=23% Similarity=0.260 Sum_probs=26.3
Q ss_pred CcccEEEEcCCCCCC------C-----HHHHHHHHhccCCCCCCcEEEEeCC
Q 026776 83 LKVDLIITDYCMPGM------T-----GYELLKKIKDSSALREIPVVIMSSE 123 (233)
Q Consensus 83 ~~~DlvllD~~mp~~------~-----g~~ll~~Lr~~~~~~~~piIvlt~~ 123 (233)
.+||+|++.+...+. + -..+++.||+..+ ..+||+++..
T Consensus 243 ~~pdlVvI~lGtND~~~~~~~~~~~~~l~~li~~ir~~~P--~a~Illv~p~ 292 (385)
T 3skv_A 243 LPADLISLRVGTSNFMDGDGFVDFPANLVGFVQIIRERHP--LTPIVLGSSV 292 (385)
T ss_dssp SCCSEEEEEESHHHHTTTCCTTTHHHHHHHHHHHHHTTCS--SSCEEEEECC
T ss_pred cCCCEEEEEeeccCCCCCCCHHHHHHHHHHHHHHHHHHCC--CCcEEEEcCC
Confidence 479999997643221 1 1457888887655 7889888754
No 393
>1gox_A (S)-2-hydroxy-acid oxidase, peroxisomal; oxidoreductase (oxygen(A)); HET: FMN; 2.00A {Spinacia oleracea} SCOP: c.1.4.1 PDB: 1gyl_A* 1al8_A* 1al7_A* 2cdh_0
Probab=35.88 E-value=2e+02 Score=24.26 Aligned_cols=88 Identities=18% Similarity=0.111 Sum_probs=56.6
Q ss_pred HHHHHHHhhcCCEEE--EECCHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCC----C-CCCHHHHHHHHhccCCCCCC
Q 026776 43 KVIERLLTISSCKVT--AVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCM----P-GMTGYELLKKIKDSSALREI 115 (233)
Q Consensus 43 ~~l~~~L~~~g~~v~--~a~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~m----p-~~~g~~ll~~Lr~~~~~~~~ 115 (233)
+.++.+-+..+..+. .+.+.+++.... ....|.|.+.-.- . ....++++..+++.-. .++
T Consensus 215 ~~i~~l~~~~~~pv~vK~~~~~e~a~~a~------------~~Gad~I~vs~~ggr~~~~~~~~~~~l~~v~~~~~-~~i 281 (370)
T 1gox_A 215 KDVAWLQTITSLPILVKGVITAEDARLAV------------QHGAAGIIVSNHGARQLDYVPATIMALEEVVKAAQ-GRI 281 (370)
T ss_dssp HHHHHHHHHCCSCEEEECCCSHHHHHHHH------------HTTCSEEEECCGGGTSSTTCCCHHHHHHHHHHHTT-TSS
T ss_pred HHHHHHHHHhCCCEEEEecCCHHHHHHHH------------HcCCCEEEECCCCCccCCCcccHHHHHHHHHHHhC-CCC
Confidence 445555454554333 356777776554 2347877774311 1 1245677888776421 268
Q ss_pred cEEEEeCCCcHHHHHHHHHcCCceEEeC
Q 026776 116 PVVIMSSENILARIDRCLEDGAEDFIVK 143 (233)
Q Consensus 116 piIvlt~~~~~~~~~~al~~Ga~dyL~K 143 (233)
|||.-.+-.+..++.+++.+||+.+..-
T Consensus 282 pvia~GGI~~~~D~~k~l~~GAdaV~iG 309 (370)
T 1gox_A 282 PVFLDGGVRRGTDVFKALALGAAGVFIG 309 (370)
T ss_dssp CEEEESSCCSHHHHHHHHHHTCSEEEEC
T ss_pred EEEEECCCCCHHHHHHHHHcCCCEEeec
Confidence 9998888888889999999999998654
No 394
>1mxs_A KDPG aldolase; 2-keto-3-deoxy-6-phosphogluconate aldolase, sulfate, beta-BA lyase; 2.20A {Pseudomonas putida} SCOP: c.1.10.1
Probab=35.79 E-value=88 Score=24.55 Aligned_cols=93 Identities=11% Similarity=0.094 Sum_probs=51.6
Q ss_pred HHHHHhhcCC-EEEEECCHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCCCCCHHHHHHHHhccCCCCCCcEEEEeCC
Q 026776 45 IERLLTISSC-KVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKKIKDSSALREIPVVIMSSE 123 (233)
Q Consensus 45 l~~~L~~~g~-~v~~a~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp~~~g~~ll~~Lr~~~~~~~~piIvlt~~ 123 (233)
+...|...+. -|....+.+++++.++.- .....++|=+. +...++.++++.+++..+ .+.+-.=+ -
T Consensus 19 ~~~~l~~~~ii~V~r~~~~~~~~~~~~al--------~~gGv~~iel~--~k~~~~~~~i~~l~~~~~--~~~igagt-v 85 (225)
T 1mxs_A 19 IDAICEKARILPVITIAREEDILPLADAL--------AAGGIRTLEVT--LRSQHGLKAIQVLREQRP--ELCVGAGT-V 85 (225)
T ss_dssp HHHHHHHHSEEEEECCSCGGGHHHHHHHH--------HHTTCCEEEEE--SSSTHHHHHHHHHHHHCT--TSEEEEEC-C
T ss_pred HHHHHHHCCEEEEEeCCCHHHHHHHHHHH--------HHCCCCEEEEe--cCCccHHHHHHHHHHhCc--ccEEeeCe-E
Confidence 3344555553 333345555555544221 11235665554 445678888888877543 44333223 2
Q ss_pred CcHHHHHHHHHcCCceEEeCCCCHHHHH
Q 026776 124 NILARIDRCLEDGAEDFIVKPVKLSDVK 151 (233)
Q Consensus 124 ~~~~~~~~al~~Ga~dyL~KP~~~~eL~ 151 (233)
-+.+....|+++||+..+. |-...++.
T Consensus 86 l~~d~~~~A~~aGAd~v~~-p~~d~~v~ 112 (225)
T 1mxs_A 86 LDRSMFAAVEAAGAQFVVT-PGITEDIL 112 (225)
T ss_dssp CSHHHHHHHHHHTCSSEEC-SSCCHHHH
T ss_pred eeHHHHHHHHHCCCCEEEe-CCCCHHHH
Confidence 4567888999999987665 44433443
No 395
>2otd_A Glycerophosphodiester phosphodiesterase; structural genomics PSI-2, protein structure initiative, midwest center for STR genomics, hydrolase; 2.60A {Shigella flexneri}
Probab=35.48 E-value=1.3e+02 Score=23.51 Aligned_cols=38 Identities=11% Similarity=0.190 Sum_probs=23.3
Q ss_pred HHHHHHhccCCCCCCcEEEEeCCCcHHHHHHHHHcCCceEEeC
Q 026776 101 ELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVK 143 (233)
Q Consensus 101 ~ll~~Lr~~~~~~~~piIvlt~~~~~~~~~~al~~Ga~dyL~K 143 (233)
++++.+++. .+++.+.|-+ +.+....+++.|++++++-
T Consensus 198 ~~v~~~~~~----G~~v~~wTvn-~~~~~~~l~~~GvdgI~TD 235 (247)
T 2otd_A 198 ARVMQLKDA----GLRILVYTVN-KPQHAAELLRWGVDCICTD 235 (247)
T ss_dssp HHHHHHHHT----TCEEEEECCC-CHHHHHHHHHHTCSEEEES
T ss_pred HHHHHHHHC----CCEEEEEccC-CHHHHHHHHHcCCCEEEeC
Confidence 455555543 4566666643 4556667777787777653
No 396
>3hcw_A Maltose operon transcriptional repressor; RNA-binding, PSI-2, NYSGXRC, STRU genomics, protein structure initiative; 2.20A {Staphylococcus aureus subsp}
Probab=35.38 E-value=73 Score=25.23 Aligned_cols=24 Identities=4% Similarity=-0.244 Sum_probs=14.5
Q ss_pred CCHHHHH---HHHHHHhhcCCEEEEEC
Q 026776 37 DSFVDRK---VIERLLTISSCKVTAVD 60 (233)
Q Consensus 37 dd~~~~~---~l~~~L~~~g~~v~~a~ 60 (233)
.++.+.. .+++.+++.||.+..+.
T Consensus 23 ~~~f~~~~~~gi~~~a~~~g~~~~~~~ 49 (295)
T 3hcw_A 23 LNPFYINVLLGISETCNQHGYGTQTTV 49 (295)
T ss_dssp SCHHHHHHHHHHHHHHHTTTCEEEECC
T ss_pred cChHHHHHHHHHHHHHHHCCCEEEEEc
Confidence 3444443 44555667888887754
No 397
>3l6u_A ABC-type sugar transport system periplasmic compo; structural genomics, nysgrc, target 11006S, PSI-2, protein S initiative; 1.90A {Exiguobacterium sibiricum}
Probab=35.36 E-value=77 Score=24.83 Aligned_cols=64 Identities=16% Similarity=0.079 Sum_probs=35.8
Q ss_pred HHHHHHHhhcCCEEEEECC---HH---HHHHHhhhhhhhhccCCCCCcccEEEEcCCCCCCCHHHHHHHHhccCCCCCCc
Q 026776 43 KVIERLLTISSCKVTAVDS---GR---RALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKKIKDSSALREIP 116 (233)
Q Consensus 43 ~~l~~~L~~~g~~v~~a~~---~~---~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp~~~g~~ll~~Lr~~~~~~~~p 116 (233)
..+++.+++.||.+..+.. .. +.++.+ ....+|-||+-..-+. .-.+.++.+++. .+|
T Consensus 28 ~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l-----------~~~~vdgiI~~~~~~~-~~~~~~~~~~~~----~iP 91 (293)
T 3l6u_A 28 NAFKAEAKANKYEALVATSQNSRISEREQILEF-----------VHLKVDAIFITTLDDV-YIGSAIEEAKKA----GIP 91 (293)
T ss_dssp HHHHHHHHHTTCEEEEEECSSCHHHHHHHHHHH-----------HHTTCSEEEEECSCTT-TTHHHHHHHHHT----TCC
T ss_pred HHHHHHHHHcCCEEEEECCCCCHHHHHHHHHHH-----------HHcCCCEEEEecCChH-HHHHHHHHHHHc----CCC
Confidence 3455566778998877543 22 233333 2346888877432221 223567777653 677
Q ss_pred EEEEeC
Q 026776 117 VVIMSS 122 (233)
Q Consensus 117 iIvlt~ 122 (233)
+|++..
T Consensus 92 vV~~~~ 97 (293)
T 3l6u_A 92 VFAIDR 97 (293)
T ss_dssp EEEESS
T ss_pred EEEecC
Confidence 777743
No 398
>1viz_A PCRB protein homolog; structural genomics, unknown function; 1.85A {Bacillus subtilis} SCOP: c.1.4.1
Probab=35.24 E-value=99 Score=24.64 Aligned_cols=55 Identities=15% Similarity=0.094 Sum_probs=42.0
Q ss_pred cEEEEcCCCCCCCHHHHHHHHhccCCCCCCcEEEEeCCCcHHHHHHHHHcCCceEEeCC
Q 026776 86 DLIITDYCMPGMTGYELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKP 144 (233)
Q Consensus 86 DlvllD~~mp~~~g~~ll~~Lr~~~~~~~~piIvlt~~~~~~~~~~al~~Ga~dyL~KP 144 (233)
.+|.++. .......++++++++... .+|+++=-+-.+.+.+.++++ ||+..+.-.
T Consensus 157 ~~VYl~s-~G~~~~~~~i~~i~~~~~--~~Pv~vGgGI~t~e~a~~~~~-gAd~VIVGS 211 (240)
T 1viz_A 157 PIFYLEY-SGVLGDIEAVKKTKAVLE--TSTLFYGGGIKDAETAKQYAE-HADVIVVGN 211 (240)
T ss_dssp SEEEEEC-TTSCCCHHHHHHHHHTCS--SSEEEEESSCCSHHHHHHHHT-TCSEEEECT
T ss_pred CEEEEeC-CCccChHHHHHHHHHhcC--CCCEEEEeccCCHHHHHHHHh-CCCEEEECh
Confidence 5777776 544556889999997532 678887766678888888888 999998876
No 399
>3tb6_A Arabinose metabolism transcriptional repressor; transcription regulation, arabinose binding, DNA binding Pro; HET: ARB; 2.21A {Bacillus subtilis}
Probab=35.23 E-value=1.3e+02 Score=23.33 Aligned_cols=20 Identities=15% Similarity=0.056 Sum_probs=12.7
Q ss_pred HHHHHHHHHhhcCCEEEEEC
Q 026776 41 DRKVIERLLTISSCKVTAVD 60 (233)
Q Consensus 41 ~~~~l~~~L~~~g~~v~~a~ 60 (233)
+...+++.+++.||.+..+.
T Consensus 33 ~~~gi~~~a~~~g~~~~~~~ 52 (298)
T 3tb6_A 33 IIRGIESYLSEQGYSMLLTS 52 (298)
T ss_dssp HHHHHHHHHHHTTCEEEEEE
T ss_pred HHHHHHHHHHHCCCEEEEEe
Confidence 34445556677788777654
No 400
>1tlt_A Putative oxidoreductase (virulence factor MVIM HO; structural genomics, NYSGXRC, PSI, protein structure initiative; 2.70A {Escherichia coli} SCOP: c.2.1.3 d.81.1.5
Probab=35.23 E-value=72 Score=25.98 Aligned_cols=46 Identities=22% Similarity=0.359 Sum_probs=30.3
Q ss_pred CCcEEEEeCCC--cHHHHHHHHHcCCceEEeCCCC--HHHHHHHHHHHhh
Q 026776 114 EIPVVIMSSEN--ILARIDRCLEDGAEDFIVKPVK--LSDVKRIKDYLTR 159 (233)
Q Consensus 114 ~~piIvlt~~~--~~~~~~~al~~Ga~dyL~KP~~--~~eL~~~~~~l~~ 159 (233)
.+-+|+++... ..+.+..+++.|..=|+.||+. .++..++.+...+
T Consensus 65 ~~D~V~i~tp~~~h~~~~~~al~~G~~v~~eKP~~~~~~~~~~l~~~a~~ 114 (319)
T 1tlt_A 65 SCDAVFVHSSTASHFDVVSTLLNAGVHVCVDKPLAENLRDAERLVELAAR 114 (319)
T ss_dssp TCSEEEECSCTTHHHHHHHHHHHTTCEEEEESSSCSSHHHHHHHHHHHHH
T ss_pred CCCEEEEeCCchhHHHHHHHHHHcCCeEEEeCCCCCCHHHHHHHHHHHHH
Confidence 34455554443 3467778999999888999964 5666666655543
No 401
>2l69_A Rossmann 2X3 fold protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}
Probab=35.22 E-value=1e+02 Score=20.86 Aligned_cols=29 Identities=17% Similarity=0.097 Sum_probs=12.3
Q ss_pred eCCHHHHHHHHHHHhhcCCEEEEECCHHH
Q 026776 36 DDSFVDRKVIERLLTISSCKVTAVDSGRR 64 (233)
Q Consensus 36 ddd~~~~~~l~~~L~~~g~~v~~a~~~~~ 64 (233)
|.+....+.+.+..+..||+|..+.+.++
T Consensus 84 dqdqnrleefsrevrrrgfevrtvtspdd 112 (134)
T 2l69_A 84 DQDQNRLEEFSREVRRRGFEVRTVTSPDD 112 (134)
T ss_dssp CSCHHHHHHHHHHHHHTTCCEEEESSHHH
T ss_pred eCchhHHHHHHHHHHhcCceEEEecChHH
Confidence 33333333444444444444444444433
No 402
>4eso_A Putative oxidoreductase; NADP, structural genomics, PSI-biology, NEW structural genomics research consortium, nysgrc; HET: MSE NAP; 1.91A {Sinorhizobium meliloti} PDB: 3vc7_A
Probab=35.17 E-value=91 Score=24.39 Aligned_cols=43 Identities=7% Similarity=0.029 Sum_probs=32.5
Q ss_pred CCCcEEEEEeCCHHHHHHHHHHHhhcCCEEEEECCHHHHHHHh
Q 026776 27 TEEVHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFL 69 (233)
Q Consensus 27 ~~~~~ILIVddd~~~~~~l~~~L~~~g~~v~~a~~~~~al~~l 69 (233)
.+.-++||..-...+...+.+.|.+.|+.|.......+.++.+
T Consensus 6 l~gk~~lVTGas~gIG~a~a~~l~~~G~~V~~~~r~~~~~~~~ 48 (255)
T 4eso_A 6 YQGKKAIVIGGTHGMGLATVRRLVEGGAEVLLTGRNESNIARI 48 (255)
T ss_dssp TTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHH
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHH
Confidence 3456789999998899999999999999888765444444443
No 403
>3c6k_A Spermine synthase; spermidine aminopropyltransferase, SPMSY, structural genomics, structural genomics consortium, SGC, phosphoprotein; HET: SPD MTA; 1.95A {Homo sapiens} PDB: 3c6m_A*
Probab=35.08 E-value=1.1e+02 Score=26.35 Aligned_cols=55 Identities=15% Similarity=0.151 Sum_probs=32.4
Q ss_pred EEEEEeCCHHHHHHHHHHHhhc-----C-CE---E-EEECCHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCC
Q 026776 31 HVLAVDDSFVDRKVIERLLTIS-----S-CK---V-TAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCM 94 (233)
Q Consensus 31 ~ILIVddd~~~~~~l~~~L~~~-----g-~~---v-~~a~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~m 94 (233)
+|-+||=|+.+.+..+++|... . .+ + ....|+.+.++.... ....||+||+|+.-
T Consensus 230 ~V~~VEIDp~VVe~ar~yfp~~~~~~~d~pr~~rv~vii~Da~~fl~~~~~---------~~~~yDvIIvDl~D 294 (381)
T 3c6k_A 230 MVTMVEIDQMVIDGCKKYMRKTCGDVLDNLKGDCYQVLIEDCIPVLKRYAK---------EGREFDYVINDLTA 294 (381)
T ss_dssp EEEEEESCHHHHHHHHHHCCC----CCSSSEETTEEEEESCHHHHHHHHHH---------HTCCEEEEEEECCS
T ss_pred eeEEEccCHHHHHHHHhhchhhhhhhhccccccceeeehHHHHHHHHhhhh---------ccCceeEEEECCCC
Confidence 5667777777777777766321 0 11 2 335677666654321 23468999999754
No 404
>1rd5_A Tryptophan synthase alpha chain, chloroplast; hydroxamic acid, diboa, dimboa, indole, indole-glycerol-PHOS lyase; 2.02A {Zea mays} SCOP: c.1.2.4 PDB: 1tjr_A
Probab=34.89 E-value=65 Score=25.61 Aligned_cols=42 Identities=17% Similarity=0.238 Sum_probs=33.5
Q ss_pred HHHHHHHHhccCCCCCCcEEEEeCCCcHHHHHHHHHcCCceEEeC
Q 026776 99 GYELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVK 143 (233)
Q Consensus 99 g~~ll~~Lr~~~~~~~~piIvlt~~~~~~~~~~al~~Ga~dyL~K 143 (233)
..++++++++.. .+||++-.+-.+.+.+.++++.||+.++.=
T Consensus 189 ~~~~i~~v~~~~---~~pI~vgGGI~~~e~~~~~~~~GAdgvvVG 230 (262)
T 1rd5_A 189 VESLIQEVKKVT---NKPVAVGFGISKPEHVKQIAQWGADGVIIG 230 (262)
T ss_dssp HHHHHHHHHHHC---SSCEEEESCCCSHHHHHHHHHTTCSEEEEC
T ss_pred HHHHHHHHHhhc---CCeEEEECCcCCHHHHHHHHHcCCCEEEEC
Confidence 556888888753 688888777676888889999999999864
No 405
>3pfn_A NAD kinase; structural genomics consortium, SNP, SGC, transferase; 2.70A {Homo sapiens}
Probab=34.81 E-value=94 Score=26.52 Aligned_cols=110 Identities=15% Similarity=0.097 Sum_probs=59.1
Q ss_pred CcEEEEEe--CCHHH---HHHHHHHHhhcCCEEEEECCHHHHHHHhhhhhh-----------hhccCCCCCcccEEEEcC
Q 026776 29 EVHVLAVD--DSFVD---RKVIERLLTISSCKVTAVDSGRRALQFLGLDEE-----------QSINGFDGLKVDLIITDY 92 (233)
Q Consensus 29 ~~~ILIVd--dd~~~---~~~l~~~L~~~g~~v~~a~~~~~al~~l~~~~~-----------~~~~~~~~~~~DlvllD~ 92 (233)
.-+|+||- .++.. ...+.++|.+.|+.|..-....+.+........ ..... ....+|+||+
T Consensus 38 ~k~I~iv~K~~~~~~~~~~~~l~~~L~~~~~~V~ve~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~DlvI~-- 114 (365)
T 3pfn_A 38 PKSVLVIKKMRDASLLQPFKELCTHLMEENMIVYVEKKVLEDPAIASDESFGAVKKKFCTFREDYDD-ISNQIDFIIC-- 114 (365)
T ss_dssp CCEEEEEECTTCGGGHHHHHHHHHHHHHTSCEEEEEHHHHHSHHHHHCSTTHHHHHHCEEECTTTCC-CTTTCSEEEE--
T ss_pred CCEEEEEecCCCHHHHHHHHHHHHHHHHCCCEEEEehHHhhhhccccccccccccccccccccChhh-cccCCCEEEE--
Confidence 35788885 33433 344555667789988775544443322110000 00001 1346788876
Q ss_pred CCCCCCHHHHHHHHhccCCCCCCcEEEEeCCCcHHHHHHHHHcCCceEEeCCCCHHHHHHHHHHHhh
Q 026776 93 CMPGMTGYELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVKLSDVKRIKDYLTR 159 (233)
Q Consensus 93 ~mp~~~g~~ll~~Lr~~~~~~~~piIvlt~~~~~~~~~~al~~Ga~dyL~KP~~~~eL~~~~~~l~~ 159 (233)
-|.|| .+++..+... ...+||+-+.. |-.+||. +++.+++...++.+.+
T Consensus 115 --lGGDG-T~L~aa~~~~-~~~~PvlGiN~-------------G~LGFLt-~~~~~~~~~~l~~vl~ 163 (365)
T 3pfn_A 115 --LGGDG-TLLYASSLFQ-GSVPPVMAFHL-------------GSLGFLT-PFSFENFQSQVTQVIE 163 (365)
T ss_dssp --ESSTT-HHHHHHHHCS-SSCCCEEEEES-------------SSCTTTC-CEESTTHHHHHHHHHH
T ss_pred --EcChH-HHHHHHHHhc-cCCCCEEEEcC-------------CCCccce-eecHHHHHHHHHHHHc
Confidence 36677 3444444322 12678887743 5556776 6666777766666653
No 406
>1wl8_A GMP synthase [glutamine-hydrolyzing] subunit A; transferase, gatases, riken structural genomics/proteomics initiative, RSGI; 1.45A {Pyrococcus horikoshii} SCOP: c.23.16.1 PDB: 2d7j_A
Probab=34.78 E-value=28 Score=26.18 Aligned_cols=78 Identities=14% Similarity=0.082 Sum_probs=44.5
Q ss_pred EEEEEeCCHHHHHHHHHHHhhcCCEEEEECCHHHHHHHhhhhhhhhccCCCCCcccEEEEcCC-CCCCCHHHHHHHHhcc
Q 026776 31 HVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYC-MPGMTGYELLKKIKDS 109 (233)
Q Consensus 31 ~ILIVddd~~~~~~l~~~L~~~g~~v~~a~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~-mp~~~g~~ll~~Lr~~ 109 (233)
.|+|||-...+...+.+.|+..|+.+..+..... ++.+ ....+|.||+-=. -+...+ ...+.++..
T Consensus 2 mi~iid~~~~~~~~~~~~l~~~G~~~~~~~~~~~-~~~~-----------~~~~~dglil~Gg~~~~~~~-~~~~~i~~~ 68 (189)
T 1wl8_A 2 MIVIMDNGGQYVHRIWRTLRYLGVETKIIPNTTP-LEEI-----------KAMNPKGIIFSGGPSLENTG-NCEKVLEHY 68 (189)
T ss_dssp EEEEEECSCTTHHHHHHHHHHTTCEEEEEETTCC-HHHH-----------HHTCCSEEEECCCSCTTCCT-THHHHHHTG
T ss_pred eEEEEECCCchHHHHHHHHHHCCCeEEEEECCCC-hHHh-----------cccCCCEEEECCCCChhhhh-hHHHHHHHH
Confidence 3899998777777888899999988877654321 1112 1124787776322 122122 123444432
Q ss_pred CCCCCCcEEEEeC
Q 026776 110 SALREIPVVIMSS 122 (233)
Q Consensus 110 ~~~~~~piIvlt~ 122 (233)
. ....|++.+..
T Consensus 69 ~-~~~~PilGIC~ 80 (189)
T 1wl8_A 69 D-EFNVPILGICL 80 (189)
T ss_dssp G-GTCSCEEEETH
T ss_pred h-hCCCeEEEEcH
Confidence 1 12688888764
No 407
>2oyr_A UPF0341 protein YHIQ; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; HET: SAH; 2.00A {Shigella flexneri 2A} SCOP: c.66.1.55 PDB: 2pgx_A 2pkw_A
Probab=34.76 E-value=1.4e+02 Score=23.95 Aligned_cols=56 Identities=14% Similarity=0.132 Sum_probs=33.7
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhc-------C-C--EEE-EECCHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCCCC
Q 026776 30 VHVLAVDDSFVDRKVIERLLTIS-------S-C--KVT-AVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGM 97 (233)
Q Consensus 30 ~~ILIVddd~~~~~~l~~~L~~~-------g-~--~v~-~a~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp~~ 97 (233)
-+|..||-++.....++..++.. + . ++. ...+..+.+..+ . ..||+|++|-..+..
T Consensus 111 ~~V~~vE~~~~~~~l~~~~l~~a~~~~~~~~~l~~~i~~~~~D~~~~L~~~-----------~-~~fDvV~lDP~y~~~ 177 (258)
T 2oyr_A 111 CRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDI-----------T-PRPQVVYLDPMFPHK 177 (258)
T ss_dssp CCEEEEECCHHHHHHHHHHHHHHHHCTTTHHHHHHHEEEEESCHHHHSTTC-----------S-SCCSEEEECCCCCCC
T ss_pred CEEEEEECCHHHHHHHHHHHHHHHhhHhhhhhhhcCEEEEECCHHHHHHhC-----------c-ccCCEEEEcCCCCCc
Confidence 36999999998777776665421 1 1 222 334544443322 2 259999999766654
No 408
>1vrd_A Inosine-5'-monophosphate dehydrogenase; TM1347, structural G joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.18A {Thermotoga maritima} SCOP: c.1.5.1
Probab=34.51 E-value=96 Score=27.26 Aligned_cols=57 Identities=25% Similarity=0.272 Sum_probs=40.4
Q ss_pred CcccEEEEcCCCCCC-CHHHHHHHHhccCCCCCCcEEEEeCCCcHHHHHHHHHcCCceEEe
Q 026776 83 LKVDLIITDYCMPGM-TGYELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIV 142 (233)
Q Consensus 83 ~~~DlvllD~~mp~~-~g~~ll~~Lr~~~~~~~~piIvlt~~~~~~~~~~al~~Ga~dyL~ 142 (233)
..+|.|.++...... .-++.++++++..+ ..|+++- .-.+.+.+..+.++|++.+..
T Consensus 248 aGvd~v~i~~~~G~~~~~~e~i~~i~~~~p--~~pvi~g-~~~t~e~a~~l~~~G~d~I~v 305 (494)
T 1vrd_A 248 AGVDVIVIDTAHGHSRRVIETLEMIKADYP--DLPVVAG-NVATPEGTEALIKAGADAVKV 305 (494)
T ss_dssp TTCSEEEECCSCCSSHHHHHHHHHHHHHCT--TSCEEEE-EECSHHHHHHHHHTTCSEEEE
T ss_pred hCCCEEEEEecCCchHHHHHHHHHHHHHCC--CceEEeC-CcCCHHHHHHHHHcCCCEEEE
Confidence 357999998764322 26788999988654 5777653 234566778888999998876
No 409
>2c6q_A GMP reductase 2; TIM barrel, metal-binding, NADP, oxidoreductase, potassium; HET: IMP NDP; 1.70A {Homo sapiens} PDB: 2bzn_A* 2a7r_A* 2ble_A* 2bwg_A*
Probab=34.44 E-value=77 Score=26.75 Aligned_cols=56 Identities=14% Similarity=0.094 Sum_probs=37.8
Q ss_pred cccEEEEcCCCCCC-CHHHHHHHHhccCCCCCCcEEEEeCCCcHHHHHHHHHcCCceEEe
Q 026776 84 KVDLIITDYCMPGM-TGYELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIV 142 (233)
Q Consensus 84 ~~DlvllD~~mp~~-~g~~ll~~Lr~~~~~~~~piIvlt~~~~~~~~~~al~~Ga~dyL~ 142 (233)
.+|++.+|...... +-++.+++||+..+ .+|+++=+ -.+.+.+..+.++|+|....
T Consensus 132 g~~~i~i~~~~g~~~~~~~~i~~lr~~~~--~~~vi~g~-v~t~e~A~~a~~aGaD~I~v 188 (351)
T 2c6q_A 132 QVKYICLDVANGYSEHFVEFVKDVRKRFP--QHTIMAGN-VVTGEMVEELILSGADIIKV 188 (351)
T ss_dssp TCCEEEEECSCTTBHHHHHHHHHHHHHCT--TSEEEEEE-ECSHHHHHHHHHTTCSEEEE
T ss_pred CCCEEEEEecCCCcHHHHHHHHHHHHhcC--CCeEEEEe-CCCHHHHHHHHHhCCCEEEE
Confidence 46788787654222 24678888887643 67777422 23467888999999998744
No 410
>3e3m_A Transcriptional regulator, LACI family; structural genomics, DNA-binding, plasmid, transcription regulation, PSI-2; 1.60A {Silicibacter pomeroyi}
Probab=34.43 E-value=1.1e+02 Score=25.01 Aligned_cols=19 Identities=5% Similarity=0.004 Sum_probs=12.5
Q ss_pred HHHHHHHHhhcCCEEEEEC
Q 026776 42 RKVIERLLTISSCKVTAVD 60 (233)
Q Consensus 42 ~~~l~~~L~~~g~~v~~a~ 60 (233)
...+++.+.+.||.+..+.
T Consensus 89 ~~gi~~~a~~~g~~~~~~~ 107 (355)
T 3e3m_A 89 AQSLTDVLEQGGLQLLLGY 107 (355)
T ss_dssp HHHHHHHHHHTTCEEEEEE
T ss_pred HHHHHHHHHHCCCEEEEEe
Confidence 3445556677899887654
No 411
>3khj_A Inosine-5-monophosphate dehydrogenase; enzyme-inhibitor complex, oxidoreductase; HET: IMP C64; 2.80A {Cryptosporidium parvum}
Probab=34.38 E-value=83 Score=26.67 Aligned_cols=56 Identities=25% Similarity=0.258 Sum_probs=38.0
Q ss_pred CcccEEEEcCCCCCCC-HHHHHHHHhccCCCCCCcEEEEeCCCcHHHHHHHHHcCCceEEe
Q 026776 83 LKVDLIITDYCMPGMT-GYELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIV 142 (233)
Q Consensus 83 ~~~DlvllD~~mp~~~-g~~ll~~Lr~~~~~~~~piIvlt~~~~~~~~~~al~~Ga~dyL~ 142 (233)
..+|+|.+|....... -.+.++++++.. .+|+|+- .-.+.+.+..+.++|+|.+..
T Consensus 116 aGad~I~ld~a~G~~~~~~~~i~~i~~~~---~~~Vivg-~v~t~e~A~~l~~aGaD~I~V 172 (361)
T 3khj_A 116 AGVDVIVLDSAHGHSLNIIRTLKEIKSKM---NIDVIVG-NVVTEEATKELIENGADGIKV 172 (361)
T ss_dssp TTCSEEEECCSCCSBHHHHHHHHHHHHHC---CCEEEEE-EECSHHHHHHHHHTTCSEEEE
T ss_pred cCcCeEEEeCCCCCcHHHHHHHHHHHHhc---CCcEEEc-cCCCHHHHHHHHHcCcCEEEE
Confidence 3589999987654332 246777777653 5677652 224567788899999998876
No 412
>3hp4_A GDSL-esterase; psychrotrophic, monoethylphosphonate, hydrolase; HET: MIR; 1.35A {Pseudoalteromonas SP} SCOP: c.23.10.0
Probab=34.19 E-value=68 Score=23.18 Aligned_cols=82 Identities=12% Similarity=0.184 Sum_probs=43.7
Q ss_pred CcEEEEEeCCHHH----------HHHHHHHHhhcCCEEEEE------CCHHHHHHHhhhhhhhhccCCCCCcccEEEEcC
Q 026776 29 EVHVLAVDDSFVD----------RKVIERLLTISSCKVTAV------DSGRRALQFLGLDEEQSINGFDGLKVDLIITDY 92 (233)
Q Consensus 29 ~~~ILIVddd~~~----------~~~l~~~L~~~g~~v~~a------~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~ 92 (233)
+.+|+++.|+-.. ...+...|...+..+... .+..+.+..+... +...+||+|++.+
T Consensus 2 ~~~i~~~GDSit~G~g~~~~~~~~~~l~~~l~~~~~~~~v~n~g~~G~~~~~~~~~~~~~-------~~~~~pd~vvi~~ 74 (185)
T 3hp4_A 2 DNTILILGDXLSAAYGLQQEEGWVKLLQDKYDAEQSDIVLINASISGETSGGALRRLDAL-------LEQYEPTHVLIEL 74 (185)
T ss_dssp CEEEEEEECTTTTTTTSCGGGSHHHHHHHHHHHTTCCEEEEECCCTTCCHHHHHHHHHHH-------HHHHCCSEEEEEC
T ss_pred CCeEEEECCcccccCCCCCcccHHHHHHHHHHhcCCcEEEEECCcCCccHHHHHHHHHHH-------HhhcCCCEEEEEe
Confidence 4578888887543 566777776655433332 1333444443211 0123689999976
Q ss_pred CCCCC----C-------HHHHHHHHhccCCCCCCcEEEEe
Q 026776 93 CMPGM----T-------GYELLKKIKDSSALREIPVVIMS 121 (233)
Q Consensus 93 ~mp~~----~-------g~~ll~~Lr~~~~~~~~piIvlt 121 (233)
...+. + --++++.+++. ...+++++
T Consensus 75 G~ND~~~~~~~~~~~~~~~~~i~~~~~~----~~~vvl~~ 110 (185)
T 3hp4_A 75 GANDGLRGFPVKKMQTNLTALVKKSQAA----NAMTALME 110 (185)
T ss_dssp CHHHHHTTCCHHHHHHHHHHHHHHHHHT----TCEEEEEC
T ss_pred ecccCCCCcCHHHHHHHHHHHHHHHHHc----CCeEEEEe
Confidence 53321 1 12356666654 34566664
No 413
>3oy2_A Glycosyltransferase B736L; rossmann fold, GDP-mannose, sugar, VIRU proteins, viral protein,transferase; 2.31A {Paramecium bursaria chlorella virus NY} PDB: 3oy7_A*
Probab=34.10 E-value=1.5e+02 Score=24.56 Aligned_cols=64 Identities=13% Similarity=0.090 Sum_probs=41.4
Q ss_pred ccEEEEcCCCCCCCHHHHHHHHhccCCCCCCcEEEEeCCCcHHHHHHHHHcCCc---------------eE--EeCCCCH
Q 026776 85 VDLIITDYCMPGMTGYELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAE---------------DF--IVKPVKL 147 (233)
Q Consensus 85 ~DlvllD~~mp~~~g~~ll~~Lr~~~~~~~~piIvlt~~~~~~~~~~al~~Ga~---------------dy--L~KP~~~ 147 (233)
.|++++-.. .+.-|..+++.+.. .+|+|+. ... ...+.+..|.. ++ +..|.+.
T Consensus 274 adv~v~pS~-~E~~~~~~lEAma~-----G~PvI~s-~~~---g~~e~v~~~~~~~i~~~~~~~~~~~~G~~gl~~~~d~ 343 (413)
T 3oy2_A 274 CDVIVNCSS-GEGFGLCSAEGAVL-----GKPLIIS-AVG---GADDYFSGDCVYKIKPSAWISVDDRDGIGGIEGIIDV 343 (413)
T ss_dssp CSEEEECCS-CCSSCHHHHHHHTT-----TCCEEEE-CCH---HHHHHSCTTTSEEECCCEEEECTTTCSSCCEEEECCH
T ss_pred CCEEEeCCC-cCCCCcHHHHHHHc-----CCCEEEc-CCC---ChHHHHccCcccccccccccccccccCcceeeCCCCH
Confidence 577777332 34456677777653 6788754 222 33455566665 78 9999999
Q ss_pred HHHHHHHHHHhh
Q 026776 148 SDVKRIKDYLTR 159 (233)
Q Consensus 148 ~eL~~~~~~l~~ 159 (233)
++|.+.+ .+..
T Consensus 344 ~~la~~i-~l~~ 354 (413)
T 3oy2_A 344 DDLVEAF-TFFK 354 (413)
T ss_dssp HHHHHHH-HHTT
T ss_pred HHHHHHH-HHhc
Confidence 9998777 6653
No 414
>3ecs_A Translation initiation factor EIF-2B subunit alpha; eukaryotic translation initiation factor 2balpha (EIF2balpha); 2.65A {Homo sapiens}
Probab=33.85 E-value=1.6e+02 Score=24.57 Aligned_cols=80 Identities=15% Similarity=0.159 Sum_probs=49.5
Q ss_pred CCCcEEEEEeCCHHH-HHHHHHHHhhcCCEEEEECCHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCC--CC-----CC
Q 026776 27 TEEVHVLAVDDSFVD-RKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCM--PG-----MT 98 (233)
Q Consensus 27 ~~~~~ILIVddd~~~-~~~l~~~L~~~g~~v~~a~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~m--p~-----~~ 98 (233)
.++++|++.|..|.. ...+...|.+.|+.++...+..-+. .+ . ..|.||+...- .+ .-
T Consensus 145 gk~~~V~v~EsrP~~qG~~la~~L~~~gI~vtli~Dsa~~~-~m-----------~--~vd~VivGAd~i~~nG~v~nki 210 (315)
T 3ecs_A 145 KKRFSVYVTESQPDLSGKKMAKALCHLNVPVTVVLDAAVGY-IM-----------E--KADLVIVGAEGVVENGGIINKI 210 (315)
T ss_dssp TCCEEEEEECCTTTTHHHHHHHHHHTTTCCEEEECGGGHHH-HG-----------G--GCSEEEEECSEECTTSCEEEET
T ss_pred CCeEEEEEecCCCcchHHHHHHHHHHcCCCEEEEehhHHHH-HH-----------H--hCCEEEECceEEecCCCeeehh
Confidence 467899988887753 3445677888899888887654443 22 1 57888886643 22 12
Q ss_pred HHHHHHHHhccCCCCCCcEEEEeCC
Q 026776 99 GYELLKKIKDSSALREIPVVIMSSE 123 (233)
Q Consensus 99 g~~ll~~Lr~~~~~~~~piIvlt~~ 123 (233)
|.-.+..+-+.. .+|+++++..
T Consensus 211 GT~~iAl~Ak~~---~vP~~V~a~~ 232 (315)
T 3ecs_A 211 GTNQMAVCAKAQ---NKPFYVVAES 232 (315)
T ss_dssp THHHHHHHHHHT---TCCEEEECCG
T ss_pred hhHHHHHHHHHh---CCCEEEEecc
Confidence 333333332221 7899888764
No 415
>3huu_A Transcription regulator like protein; PSI-II, NYSGXRC, LAC I, STR genomics, protein structure initiative; 1.95A {Staphylococcus haemolyticus}
Probab=33.84 E-value=1.7e+02 Score=23.00 Aligned_cols=62 Identities=13% Similarity=0.193 Sum_probs=33.6
Q ss_pred HHHHHHHhhcCCEEEEECCHH------HHHHHhhhhhhhhccCCCCCcccEEEEcCCCCCCCHHHHHHHHhccCCCCCCc
Q 026776 43 KVIERLLTISSCKVTAVDSGR------RALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKKIKDSSALREIP 116 (233)
Q Consensus 43 ~~l~~~L~~~g~~v~~a~~~~------~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp~~~g~~ll~~Lr~~~~~~~~p 116 (233)
..+++.+++.||.+..+.... +.++.+ ....+|-||+--.... -+.++.+++. .+|
T Consensus 47 ~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~l-----------~~~~vdgiIi~~~~~~---~~~~~~l~~~----~iP 108 (305)
T 3huu_A 47 NGINQACNVRGYSTRMTVSENSGDLYHEVKTMI-----------QSKSVDGFILLYSLKD---DPIEHLLNEF----KVP 108 (305)
T ss_dssp HHHHHHHHHHTCEEEECCCSSHHHHHHHHHHHH-----------HTTCCSEEEESSCBTT---CHHHHHHHHT----TCC
T ss_pred HHHHHHHHHCCCEEEEEeCCCChHHHHHHHHHH-----------HhCCCCEEEEeCCcCC---cHHHHHHHHc----CCC
Confidence 345555677899888765322 223333 3456787666322111 1556666543 567
Q ss_pred EEEEeC
Q 026776 117 VVIMSS 122 (233)
Q Consensus 117 iIvlt~ 122 (233)
+|++..
T Consensus 109 vV~i~~ 114 (305)
T 3huu_A 109 YLIVGK 114 (305)
T ss_dssp EEEESC
T ss_pred EEEECC
Confidence 777643
No 416
>3beo_A UDP-N-acetylglucosamine 2-epimerase; UDP-GLCNAC, allosteric, regulation, isomerase; HET: UD1 UDP; 1.70A {Bacillus anthracis} PDB: 1o6c_A
Probab=33.70 E-value=1.9e+02 Score=23.37 Aligned_cols=59 Identities=17% Similarity=0.156 Sum_probs=36.8
Q ss_pred ccEEEEcCCCCCCCHHHHHHHHhccCCCCCCcEEEEeCCCcHHHHHHHHHcCCceEEeCCCCHHHHHHHHHHHhh
Q 026776 85 VDLIITDYCMPGMTGYELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVKLSDVKRIKDYLTR 159 (233)
Q Consensus 85 ~DlvllD~~mp~~~g~~ll~~Lr~~~~~~~~piIvlt~~~~~~~~~~al~~Ga~dyL~KP~~~~eL~~~~~~l~~ 159 (233)
.|++++.. |.-+++.+-. .+|+|+...... ..+.++.| .+++..+ +.++|.+.+..+..
T Consensus 283 ad~~v~~s------g~~~lEA~a~-----G~Pvi~~~~~~~---~~e~v~~g-~g~~v~~-d~~~la~~i~~ll~ 341 (375)
T 3beo_A 283 SYLMLTDS------GGVQEEAPSL-----GVPVLVLRDTTE---RPEGIEAG-TLKLAGT-DEETIFSLADELLS 341 (375)
T ss_dssp CSEEEECC------HHHHHHHHHH-----TCCEEECSSCCS---CHHHHHTT-SEEECCS-CHHHHHHHHHHHHH
T ss_pred CcEEEECC------CChHHHHHhc-----CCCEEEecCCCC---CceeecCC-ceEEcCC-CHHHHHHHHHHHHh
Confidence 57777643 4446566543 678886632122 22346778 8898876 88999877766653
No 417
>3dci_A Arylesterase; SGNH_hydrolase SUBF structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; HET: MSE; 2.00A {Agrobacterium tumefaciens str}
Probab=33.65 E-value=1.5e+02 Score=22.38 Aligned_cols=41 Identities=12% Similarity=0.049 Sum_probs=24.7
Q ss_pred cc-cEEEEcCCCCCCCH-------------HHHHHHHhccCC---CCCCcEEEEeCCC
Q 026776 84 KV-DLIITDYCMPGMTG-------------YELLKKIKDSSA---LREIPVVIMSSEN 124 (233)
Q Consensus 84 ~~-DlvllD~~mp~~~g-------------~~ll~~Lr~~~~---~~~~piIvlt~~~ 124 (233)
.| |+|++-+...+... -++++.+++... .+..+||+++...
T Consensus 100 ~p~d~VvI~~GtND~~~~~~~~~~~~~~~l~~li~~ir~~~~~~~~p~~~iil~~p~~ 157 (232)
T 3dci_A 100 MPLDLVIIMLGTNDIKPVHGGRAEAAVSGMRRLAQIVETFIYKPREAVPKLLIVAPPP 157 (232)
T ss_dssp CSCSEEEEECCTTTTSGGGTSSHHHHHHHHHHHHHHHHHCCCSSTTCCCEEEEEECCC
T ss_pred CCCCEEEEEeccCCCccccCCCHHHHHHHHHHHHHHHHHhcccccCCCCeEEEEeCCC
Confidence 46 99999776555321 235667776530 0267888887543
No 418
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=33.56 E-value=1.1e+02 Score=24.90 Aligned_cols=10 Identities=20% Similarity=0.258 Sum_probs=8.3
Q ss_pred CcccEEEEcC
Q 026776 83 LKVDLIITDY 92 (233)
Q Consensus 83 ~~~DlvllD~ 92 (233)
..+|+||+|.
T Consensus 181 ~~~dlvIiDT 190 (296)
T 2px0_A 181 SEYDHVFVDT 190 (296)
T ss_dssp GGSSEEEEEC
T ss_pred cCCCEEEEeC
Confidence 4689999993
No 419
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=33.54 E-value=54 Score=25.74 Aligned_cols=34 Identities=15% Similarity=0.184 Sum_probs=21.9
Q ss_pred cccEEEEcC-CCCCCCHHHHHHHHhccCCCCCCcEEEEe
Q 026776 84 KVDLIITDY-CMPGMTGYELLKKIKDSSALREIPVVIMS 121 (233)
Q Consensus 84 ~~DlvllD~-~mp~~~g~~ll~~Lr~~~~~~~~piIvlt 121 (233)
.+|+|++|= +.-..+-+++++.+... .++||+..
T Consensus 101 ~~dvViIDEaQF~~~~~V~~l~~l~~~----~~~Vi~~G 135 (214)
T 2j9r_A 101 EMDVIAIDEVQFFDGDIVEVVQVLANR----GYRVIVAG 135 (214)
T ss_dssp SCCEEEECCGGGSCTTHHHHHHHHHHT----TCEEEEEE
T ss_pred CCCEEEEECcccCCHHHHHHHHHHhhC----CCEEEEEe
Confidence 589999983 23334567778777643 56666543
No 420
>1xhl_A Short-chain dehydrogenase/reductase family member putative tropinone reductase-II...; parallel beta-sheet of seven strands in the order 3214567; HET: NDP TNE; 2.40A {Caenorhabditis elegans} SCOP: c.2.1.2
Probab=33.45 E-value=78 Score=25.56 Aligned_cols=34 Identities=12% Similarity=0.025 Sum_probs=27.2
Q ss_pred CCCcEEEEEeCCHHHHHHHHHHHhhcCCEEEEEC
Q 026776 27 TEEVHVLAVDDSFVDRKVIERLLTISSCKVTAVD 60 (233)
Q Consensus 27 ~~~~~ILIVddd~~~~~~l~~~L~~~g~~v~~a~ 60 (233)
.+..++||..-...+...+.+.|.+.|+.|....
T Consensus 24 l~~k~vlVTGas~gIG~aia~~L~~~G~~V~~~~ 57 (297)
T 1xhl_A 24 FSGKSVIITGSSNGIGRSAAVIFAKEGAQVTITG 57 (297)
T ss_dssp CTTCEEEETTCSSHHHHHHHHHHHHTTCEEEEEE
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEe
Confidence 4556788888888888888888888899887754
No 421
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=33.36 E-value=40 Score=29.40 Aligned_cols=10 Identities=20% Similarity=0.282 Sum_probs=8.3
Q ss_pred CcccEEEEcC
Q 026776 83 LKVDLIITDY 92 (233)
Q Consensus 83 ~~~DlvllD~ 92 (233)
..+|+||+|.
T Consensus 182 ~~~D~VIIDT 191 (433)
T 2xxa_A 182 KFYDVLLVDT 191 (433)
T ss_dssp TTCSEEEEEC
T ss_pred CCCCEEEEEC
Confidence 3689999998
No 422
>1vrd_A Inosine-5'-monophosphate dehydrogenase; TM1347, structural G joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.18A {Thermotoga maritima} SCOP: c.1.5.1
Probab=33.35 E-value=2.4e+02 Score=24.56 Aligned_cols=43 Identities=14% Similarity=0.249 Sum_probs=30.3
Q ss_pred HHHHHHHHhccCCCCCCcEEEEeCCCcHHHHHHHHHcCCceEE
Q 026776 99 GYELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFI 141 (233)
Q Consensus 99 g~~ll~~Lr~~~~~~~~piIvlt~~~~~~~~~~al~~Ga~dyL 141 (233)
.++++..+.+......+|||.-.+-.+..++.+++.+||+.+.
T Consensus 325 ~~~~l~~v~~~~~~~~ipvia~GGI~~~~di~kala~GAd~V~ 367 (494)
T 1vrd_A 325 QLTAVMECSEVARKYDVPIIADGGIRYSGDIVKALAAGAESVM 367 (494)
T ss_dssp HHHHHHHHHHHHHTTTCCEEEESCCCSHHHHHHHHHTTCSEEE
T ss_pred HHHHHHHHHHHHhhcCCCEEEECCcCCHHHHHHHHHcCCCEEE
Confidence 3444455443211127899988777888999999999998876
No 423
>4fe7_A Xylose operon regulatory protein; HTH_ARAC, helix-turn-helix, PBP, periplasmic binding protein binding transcription regulator, DNA xylose; HET: XYS; 2.90A {Escherichia coli} PDB: 4fe4_A
Probab=33.24 E-value=1e+02 Score=26.00 Aligned_cols=73 Identities=15% Similarity=0.233 Sum_probs=37.2
Q ss_pred CcEEEEE-e-CCHHHH---HHHHHHHhhcCCEEEEECC--HHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCCCCCHHH
Q 026776 29 EVHVLAV-D-DSFVDR---KVIERLLTISSCKVTAVDS--GRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYE 101 (233)
Q Consensus 29 ~~~ILIV-d-dd~~~~---~~l~~~L~~~g~~v~~a~~--~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp~~~g~~ 101 (233)
..+|.|+ + +++.+. ..+++.+++.||.+..... ..+.++.+ ....+|-||+.. ...+
T Consensus 25 s~~Igvv~~~~~~f~~~l~~gi~~~a~~~g~~~~i~~~~~~~~~i~~l-----------~~~~vDGiIi~~-----~~~~ 88 (412)
T 4fe7_A 25 RHRITLLFNANKAYDRQVVEGVGEYLQASQSEWDIFIEEDFRARIDKI-----------KDWLGDGVIADF-----DDKQ 88 (412)
T ss_dssp CEEEEEECCTTSHHHHHHHHHHHHHHHHHTCCEEEEECC-CC-------------------CCCSEEEEET-----TCHH
T ss_pred CceEEEEeCCcchhhHHHHHHHHHHHHhcCCCeEEEecCCccchhhhH-----------hcCCCCEEEEec-----CChH
Confidence 3444444 2 344443 3455556677887765432 22233333 456789888832 2245
Q ss_pred HHHHHhccCCCCCCcEEEEe
Q 026776 102 LLKKIKDSSALREIPVVIMS 121 (233)
Q Consensus 102 ll~~Lr~~~~~~~~piIvlt 121 (233)
.++.+++. .+|+|++.
T Consensus 89 ~~~~l~~~----~iPvV~i~ 104 (412)
T 4fe7_A 89 IEQALADV----DVPIVGVG 104 (412)
T ss_dssp HHHHHTTC----CSCEEEEE
T ss_pred HHHHHhhC----CCCEEEec
Confidence 66677653 67888774
No 424
>2gpy_A O-methyltransferase; structural genomics, PSI, protein structure initiative, NEW research center for structural genomics, nysgxrc; HET: MSE; 1.90A {Bacillus halodurans}
Probab=33.20 E-value=1.4e+02 Score=22.70 Aligned_cols=68 Identities=6% Similarity=0.001 Sum_probs=41.5
Q ss_pred CcEEEEEeCCHHHHHHHHHHHhhcCC--EEEE-ECCHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCCCCCHHHHHHH
Q 026776 29 EVHVLAVDDSFVDRKVIERLLTISSC--KVTA-VDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKK 105 (233)
Q Consensus 29 ~~~ILIVddd~~~~~~l~~~L~~~g~--~v~~-a~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp~~~g~~ll~~ 105 (233)
..+|..+|-++...+..++.+...|. .+.. ..+..+.+.... ....||+|++|.... +-..+++.
T Consensus 78 ~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~----------~~~~fD~I~~~~~~~--~~~~~l~~ 145 (233)
T 2gpy_A 78 EATIVSIERDERRYEEAHKHVKALGLESRIELLFGDALQLGEKLE----------LYPLFDVLFIDAAKG--QYRRFFDM 145 (233)
T ss_dssp TCEEEEECCCHHHHHHHHHHHHHTTCTTTEEEECSCGGGSHHHHT----------TSCCEEEEEEEGGGS--CHHHHHHH
T ss_pred CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHhcc----------cCCCccEEEECCCHH--HHHHHHHH
Confidence 35788889888888888888776653 2332 334333322220 124699999987654 44556666
Q ss_pred Hhc
Q 026776 106 IKD 108 (233)
Q Consensus 106 Lr~ 108 (233)
+..
T Consensus 146 ~~~ 148 (233)
T 2gpy_A 146 YSP 148 (233)
T ss_dssp HGG
T ss_pred HHH
Confidence 654
No 425
>3nav_A Tryptophan synthase alpha chain; alpha subunit, structural genomics, CSG center for structural genomics of infectious diseases; 2.10A {Vibrio cholerae o1 biovar el tor} SCOP: c.1.2.4
Probab=33.18 E-value=1.9e+02 Score=23.34 Aligned_cols=42 Identities=19% Similarity=0.274 Sum_probs=31.8
Q ss_pred HHHHHHHhccCCCCCCcEEEEeCCCcHHHHHHHHHcCCceEEeCC
Q 026776 100 YELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKP 144 (233)
Q Consensus 100 ~~ll~~Lr~~~~~~~~piIvlt~~~~~~~~~~al~~Ga~dyL~KP 144 (233)
.++++++|+.. ++|+++=.+-.+.+.+.+++..|||+++.-.
T Consensus 197 ~~~v~~vr~~~---~~Pv~vGfGIst~e~~~~~~~~gADgvIVGS 238 (271)
T 3nav_A 197 HALLERLQQFD---APPALLGFGISEPAQVKQAIEAGAAGAISGS 238 (271)
T ss_dssp HHHHHHHHHTT---CCCEEECSSCCSHHHHHHHHHTTCSEEEESH
T ss_pred HHHHHHHHHhc---CCCEEEECCCCCHHHHHHHHHcCCCEEEECH
Confidence 46788888753 6788775555567777779999999998864
No 426
>1xj5_A Spermidine synthase 1; structural genomics, protein structure initiative, CESG, AT1G23820, putrescine aminopropyl transferase, SPDS1; 2.70A {Arabidopsis thaliana} SCOP: c.66.1.17 PDB: 2q41_A
Probab=33.04 E-value=1.3e+02 Score=24.96 Aligned_cols=56 Identities=14% Similarity=0.091 Sum_probs=35.1
Q ss_pred CcEEEEEeCCHHHHHHHHHHHhhc--CC---EE-EEECCHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCC
Q 026776 29 EVHVLAVDDSFVDRKVIERLLTIS--SC---KV-TAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMP 95 (233)
Q Consensus 29 ~~~ILIVddd~~~~~~l~~~L~~~--g~---~v-~~a~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp 95 (233)
..+|..||-++...+..++.+... |+ .+ ....++.+.+... ....||+|++|...|
T Consensus 144 ~~~V~~VDis~~~l~~Ar~~~~~~~~gl~~~rv~~~~~D~~~~l~~~-----------~~~~fDlIi~d~~~p 205 (334)
T 1xj5_A 144 IEQIDMCEIDKMVVDVSKQFFPDVAIGYEDPRVNLVIGDGVAFLKNA-----------AEGSYDAVIVDSSDP 205 (334)
T ss_dssp CCEEEEEESCHHHHHHHHHHCHHHHGGGGSTTEEEEESCHHHHHHTS-----------CTTCEEEEEECCCCT
T ss_pred CCEEEEEECCHHHHHHHHHHHHhhccccCCCcEEEEECCHHHHHHhc-----------cCCCccEEEECCCCc
Confidence 357888998888888887776532 11 22 2345655544322 234699999987544
No 427
>2khz_A C-MYC-responsive protein RCL; flexible loop, nucleus, phosphoprotein, nuclear protein; NMR {Rattus norvegicus} PDB: 2klh_A*
Probab=33.02 E-value=86 Score=23.20 Aligned_cols=114 Identities=18% Similarity=0.207 Sum_probs=58.0
Q ss_pred CCCCcEEEEEeCCH-----H-HHHHHHHHHhhcCCEEEE---E-----C-------CH----HHHHHHhhhhhhhhccCC
Q 026776 26 DTEEVHVLAVDDSF-----V-DRKVIERLLTISSCKVTA---V-----D-------SG----RRALQFLGLDEEQSINGF 80 (233)
Q Consensus 26 ~~~~~~ILIVddd~-----~-~~~~l~~~L~~~g~~v~~---a-----~-------~~----~~al~~l~~~~~~~~~~~ 80 (233)
..++++|.|...-. . ..+.+.+.|+..| .|.. + . +. ..-++++
T Consensus 8 ~~~~~kVYLAGp~~~~~~~~~~~~~i~~~l~~~G-~V~~~~~~~p~~~~~g~~~~~~~~~i~~~d~~~i----------- 75 (165)
T 2khz_A 8 EQAPCSVYFCGSIRGGREDQALYARIVSRLRRYG-KVLTEHVADAELEPLGEEAAGGDQFIHEQDLNWL----------- 75 (165)
T ss_dssp SCCCCEEEEECCCSSCSHHHHHHHHHHHHHHHHS-EESGGGTTTTSSSCCSTTSTTCHHHHHHHHHHHH-----------
T ss_pred CCCCeEEEEECCCCCcHHHHHHHHHHHHHHHhcC-CcccccccCchhhccccccccCHHHHHHHHHHHH-----------
Confidence 34567898885432 1 3466778888888 6631 0 0 11 1112222
Q ss_pred CCCcccEEEEcCCCCC-CCHHHHHHHHhccCCCCCCcEEEEeCCCcHHHHHHHHHcCCce---EEeCCCCHHHHHHHHHH
Q 026776 81 DGLKVDLIITDYCMPG-MTGYELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAED---FIVKPVKLSDVKRIKDY 156 (233)
Q Consensus 81 ~~~~~DlvllD~~mp~-~~g~~ll~~Lr~~~~~~~~piIvlt~~~~~~~~~~al~~Ga~d---yL~KP~~~~eL~~~~~~ 156 (233)
...|+||.++.-++ ..++|+--... . ..||+++....... ...++-.|... |-.+.++.++|...+..
T Consensus 76 --~~aD~vva~~~~~d~Gt~~EiGyA~a-l----gKPVi~l~~~~~~~-~~n~M~~g~~~~~~~~~~~y~~~el~~~l~~ 147 (165)
T 2khz_A 76 --QQADVVVAEVTQPSLGVGYELGRAVA-L----GKPILCLFRPQSGR-VLSAMIRGAADGSRFQVWDYAEGEVETMLDR 147 (165)
T ss_dssp --HHCSEEEEECSSCCHHHHHHHHHHHH-T----CSSEEEEECTTTTC-CCCHHHHHTCCSSSEEEEECCTTTHHHHHHH
T ss_pred --HhCCEEEEECCCCCCCHHHHHHHHHH-C----CCEEEEEEcCCCCC-cchhhhcccCccceeEEEecCHHHHHHHHHH
Confidence 24689999876222 12344443332 1 67899887554211 11122233322 33334477788766665
Q ss_pred Hhh
Q 026776 157 LTR 159 (233)
Q Consensus 157 l~~ 159 (233)
+.+
T Consensus 148 ~~~ 150 (165)
T 2khz_A 148 YFE 150 (165)
T ss_dssp HHH
T ss_pred HHH
Confidence 544
No 428
>3egc_A Putative ribose operon repressor; structural genomics, unknown function, DNA-binding, transcri transcription regulation, PSI-2; 2.35A {Burkholderia thailandensis}
Probab=32.91 E-value=79 Score=24.82 Aligned_cols=19 Identities=11% Similarity=-0.004 Sum_probs=12.1
Q ss_pred HHHHHHHHhhcCCEEEEEC
Q 026776 42 RKVIERLLTISSCKVTAVD 60 (233)
Q Consensus 42 ~~~l~~~L~~~g~~v~~a~ 60 (233)
...+++.+++.||.+..+.
T Consensus 27 ~~gi~~~a~~~g~~~~~~~ 45 (291)
T 3egc_A 27 ASGVESEARHKGYSVLLAN 45 (291)
T ss_dssp HHHHHHHHHHTTCEEEEEE
T ss_pred HHHHHHHHHHCCCEEEEEe
Confidence 3344555667788777664
No 429
>3lop_A Substrate binding periplasmic protein; protein structure initiative II(PSI II), NYSGXRC, structural genomics; 1.55A {Ralstonia solanacearum}
Probab=32.73 E-value=62 Score=26.49 Aligned_cols=64 Identities=16% Similarity=0.170 Sum_probs=37.9
Q ss_pred HHHHHHHhhcCCEEE---EE----CCHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCCCCCHHHHHHHHhccCCCCCC
Q 026776 43 KVIERLLTISSCKVT---AV----DSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKKIKDSSALREI 115 (233)
Q Consensus 43 ~~l~~~L~~~g~~v~---~a----~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp~~~g~~ll~~Lr~~~~~~~~ 115 (233)
..+++.+++.|..+. .+ .+....+..+ ....+|+|++.. .+.+...+++.+++... .+
T Consensus 159 ~~~~~~~~~~G~~v~~~~~~~~~~~d~~~~~~~l-----------~~~~~d~v~~~~--~~~~a~~~~~~~~~~g~--~~ 223 (364)
T 3lop_A 159 TGVERTLKAHALAITAMASYPRNTANVGPAVDKL-----------LAADVQAIFLGA--TAEPAAQFVRQYRARGG--EA 223 (364)
T ss_dssp HHHHHHHHTTTCCCSEEEEECTTSCCCHHHHHHH-----------HHSCCSEEEEES--CHHHHHHHHHHHHHTTC--CC
T ss_pred HHHHHHHHHcCCcEEEEEEecCCCccHHHHHHHH-----------HhCCCCEEEEec--CcHHHHHHHHHHHHcCC--CC
Confidence 445556666675432 22 2445555555 234689999843 23456778888888765 67
Q ss_pred cEEEEe
Q 026776 116 PVVIMS 121 (233)
Q Consensus 116 piIvlt 121 (233)
|++...
T Consensus 224 ~~i~~~ 229 (364)
T 3lop_A 224 QLLGLS 229 (364)
T ss_dssp EEEECT
T ss_pred eEEEec
Confidence 765443
No 430
>3sg0_A Extracellular ligand-binding receptor; structural genomics, PSI-biology; HET: 173; 1.20A {Rhodopseudomonas palustris} PDB: 4dqd_A*
Probab=32.43 E-value=62 Score=26.52 Aligned_cols=73 Identities=12% Similarity=0.017 Sum_probs=42.4
Q ss_pred HHHHHHHHhhcCCEEE---EE----CCHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCCCCCHHHHHHHHhccCCCCC
Q 026776 42 RKVIERLLTISSCKVT---AV----DSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKKIKDSSALRE 114 (233)
Q Consensus 42 ~~~l~~~L~~~g~~v~---~a----~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp~~~g~~ll~~Lr~~~~~~~ 114 (233)
.+.+++.+++.|..+. .+ .+....+..+ ....+|+|++... +.+...+++.+++.+. .
T Consensus 176 ~~~~~~~l~~~g~~v~~~~~~~~~~~d~~~~~~~~-----------~~~~~dav~~~~~--~~~a~~~~~~~~~~g~--~ 240 (386)
T 3sg0_A 176 YKVLAAAAPKLGFELTTHEVYARSDASVTGQVLKI-----------IATKPDAVFIASA--GTPAVLPQKALRERGF--K 240 (386)
T ss_dssp HHHHHHHHHHHTCEECCCEEECTTCSCCHHHHHHH-----------HHTCCSEEEEECC--SGGGHHHHHHHHHTTC--C
T ss_pred HHHHHHHHHHcCCEEEEEEeeCCCCCcHHHHHHHH-----------HhcCCCEEEEecC--cchHHHHHHHHHHcCC--C
Confidence 3445556666776553 12 2444455554 2346899988542 3457788999988765 5
Q ss_pred CcEEEEeCCCcHHHH
Q 026776 115 IPVVIMSSENILARI 129 (233)
Q Consensus 115 ~piIvlt~~~~~~~~ 129 (233)
.+++......+....
T Consensus 241 ~~~~~~~~~~~~~~~ 255 (386)
T 3sg0_A 241 GAIYQTHGVATEEFI 255 (386)
T ss_dssp SEEECCGGGCSHHHH
T ss_pred CcEEeccccCCHHHH
Confidence 666554444444433
No 431
>2i2c_A Probable inorganic polyphosphate/ATP-NAD kinase 1; NADP bound of lmnadk1, transferase; HET: DTA PG4; 1.85A {Listeria monocytogenes egd-e} PDB: 2i1w_A* 2i2a_A* 2i2b_A* 2i29_A* 2i2d_A* 2i2e_A* 3v7u_A* 3v7w_A* 3v7y_A* 3v80_A* 3v8m_A* 3v8n_A* 3v8p_A* 4dy6_A* 2i2f_A* 2q5f_A* 3v8q_A* 3v8r_A*
Probab=32.38 E-value=1.6e+02 Score=23.50 Aligned_cols=57 Identities=16% Similarity=0.338 Sum_probs=30.1
Q ss_pred cccEEEEcCCCCCCCHHHHHHHHhccCCC-CCCcEEEEeCCCcHHHHHHHHHcCCceEEeCCCCHHHHHHHHHHHhh
Q 026776 84 KVDLIITDYCMPGMTGYELLKKIKDSSAL-REIPVVIMSSENILARIDRCLEDGAEDFIVKPVKLSDVKRIKDYLTR 159 (233)
Q Consensus 84 ~~DlvllD~~mp~~~g~~ll~~Lr~~~~~-~~~piIvlt~~~~~~~~~~al~~Ga~dyL~KP~~~~eL~~~~~~l~~ 159 (233)
.+|+||. -+.|| .+++..+..... ..+|++.+-. |-.+|+. .+.++++..+++.+..
T Consensus 35 ~~D~vv~----lGGDG-T~l~aa~~~~~~~~~~PilGIn~-------------G~lgfl~-~~~~~~~~~~l~~l~~ 92 (272)
T 2i2c_A 35 EPEIVIS----IGGDG-TFLSAFHQYEERLDEIAFIGIHT-------------GHLGFYA-DWRPAEADKLVKLLAK 92 (272)
T ss_dssp SCSEEEE----EESHH-HHHHHHHHTGGGTTTCEEEEEES-------------SSCCSSC-CBCGGGHHHHHHHHHT
T ss_pred CCCEEEE----EcCcH-HHHHHHHHHhhcCCCCCEEEEeC-------------CCCCcCC-cCCHHHHHHHHHHHHc
Confidence 4788876 25666 233434332211 2678888732 4444554 4445566655555543
No 432
>3slg_A PBGP3 protein; structural genomics, seattle structural genomics center for infectious disease, ssgcid, melioidosis, glanders; 2.10A {Burkholderia pseudomallei}
Probab=32.32 E-value=27 Score=29.01 Aligned_cols=37 Identities=14% Similarity=0.143 Sum_probs=26.5
Q ss_pred CCCCCCcEEEEEeCCHHHHHHHHHHHhhc-CCEEEEEC
Q 026776 24 PSDTEEVHVLAVDDSFVDRKVIERLLTIS-SCKVTAVD 60 (233)
Q Consensus 24 ~~~~~~~~ILIVddd~~~~~~l~~~L~~~-g~~v~~a~ 60 (233)
+..+..++|||..-.-.+...+.+.|.+. |++|....
T Consensus 19 ~~~m~~~~vlVtGatG~iG~~l~~~L~~~~g~~V~~~~ 56 (372)
T 3slg_A 19 PGSMKAKKVLILGVNGFIGHHLSKRILETTDWEVFGMD 56 (372)
T ss_dssp ----CCCEEEEESCSSHHHHHHHHHHHHHSSCEEEEEE
T ss_pred CcccCCCEEEEECCCChHHHHHHHHHHhCCCCEEEEEe
Confidence 33455679999999888888887777766 88887754
No 433
>3ntv_A MW1564 protein; rossmann fold, putative methyltransferase, transferase; HET: MSE; 1.55A {Staphylococcus aureus}
Probab=32.23 E-value=1.1e+02 Score=23.41 Aligned_cols=66 Identities=11% Similarity=0.126 Sum_probs=43.8
Q ss_pred CcEEEEEeCCHHHHHHHHHHHhhcCC--EEE-EECCHHHHHH-HhhhhhhhhccCCCCCcccEEEEcCCCCCCCHHHHHH
Q 026776 29 EVHVLAVDDSFVDRKVIERLLTISSC--KVT-AVDSGRRALQ-FLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLK 104 (233)
Q Consensus 29 ~~~ILIVddd~~~~~~l~~~L~~~g~--~v~-~a~~~~~al~-~l~~~~~~~~~~~~~~~~DlvllD~~mp~~~g~~ll~ 104 (233)
..+|..||-++......++.++..|. .+. ...+..+.+. .+ ...||+|++|.... +-..+++
T Consensus 95 ~~~v~~vD~~~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~~~~------------~~~fD~V~~~~~~~--~~~~~l~ 160 (232)
T 3ntv_A 95 DIHVTTIERNETMIQYAKQNLATYHFENQVRIIEGNALEQFENVN------------DKVYDMIFIDAAKA--QSKKFFE 160 (232)
T ss_dssp TCEEEEEECCHHHHHHHHHHHHHTTCTTTEEEEESCGGGCHHHHT------------TSCEEEEEEETTSS--SHHHHHH
T ss_pred CCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECCHHHHHHhhc------------cCCccEEEEcCcHH--HHHHHHH
Confidence 56899999999999999888887764 233 3445444433 32 34699999996533 3445666
Q ss_pred HHhc
Q 026776 105 KIKD 108 (233)
Q Consensus 105 ~Lr~ 108 (233)
.+..
T Consensus 161 ~~~~ 164 (232)
T 3ntv_A 161 IYTP 164 (232)
T ss_dssp HHGG
T ss_pred HHHH
Confidence 6643
No 434
>3qfm_A SAPH, putative uncharacterized protein; sandwich fold, asymmetric AP4A hydrolase, phosphodiesterase, binding, Mn2+ binding, hydrolase; 1.90A {Streptococcus pneumoniae} PDB: 3qfn_A 3qfo_A*
Probab=32.18 E-value=57 Score=26.21 Aligned_cols=69 Identities=16% Similarity=0.114 Sum_probs=41.8
Q ss_pred CCCCCcEEEEEeCCHHHHHHHHHHHhhcCCEEEEECCHHHHHHHhhhhhhhhccCCCCCcccEEEE--cCCCCCCCHHHH
Q 026776 25 SDTEEVHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIIT--DYCMPGMTGYEL 102 (233)
Q Consensus 25 ~~~~~~~ILIVddd~~~~~~l~~~L~~~g~~v~~a~~~~~al~~l~~~~~~~~~~~~~~~~Dlvll--D~~mp~~~g~~l 102 (233)
.++..++|++|-|=-.....+..+|+. + ....+|.|++ |+.-.+.+..++
T Consensus 7 ~~~~~~~i~~iSDiHg~~~~l~~vl~~-----------------~-----------~~~~~D~ii~~GDlv~~g~~~~~~ 58 (270)
T 3qfm_A 7 HHMDMTKIALLSDIHGNTTALEAVLAD-----------------A-----------RQLGVDEYWLLGDILMPGTGRRRI 58 (270)
T ss_dssp ----CEEEEEECCCTTCHHHHHHHHHH-----------------H-----------HHTTCCEEEECSCCSSSSSCSHHH
T ss_pred ccccccEEEEEecCCCCHHHHHHHHHH-----------------H-----------HhcCCCEEEEcCCCCCCCCCHHHH
Confidence 345679999999876655555555432 2 1124787776 665555566788
Q ss_pred HHHHhccCCCCCCcEEEEeCCCcH
Q 026776 103 LKKIKDSSALREIPVVIMSSENIL 126 (233)
Q Consensus 103 l~~Lr~~~~~~~~piIvlt~~~~~ 126 (233)
++.|++. .+++++.++.+.
T Consensus 59 ~~~l~~~-----~~~~~v~GNhD~ 77 (270)
T 3qfm_A 59 LDLLDQL-----PITARVLGNWED 77 (270)
T ss_dssp HHHHHTS-----CEEEECCCHHHH
T ss_pred HHHHHcc-----CCEEEEcCChHH
Confidence 9999864 256666666553
No 435
>1kjq_A GART 2, phosphoribosylglycinamide formyltransferase 2, 5'-; ATP-grAsp, purine biosynthesis, nucleotide; HET: ADP MPO; 1.05A {Escherichia coli} SCOP: b.84.2.1 c.30.1.1 d.142.1.2 PDB: 1kj9_A* 1kji_A* 1kjj_A* 1kj8_A* 1eyz_A* 1ez1_A*
Probab=32.16 E-value=1.2e+02 Score=25.20 Aligned_cols=32 Identities=19% Similarity=0.153 Sum_probs=22.6
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHhhcCCEEEEEC
Q 026776 28 EEVHVLAVDDSFVDRKVIERLLTISSCKVTAVD 60 (233)
Q Consensus 28 ~~~~ILIVddd~~~~~~l~~~L~~~g~~v~~a~ 60 (233)
..++|||+.....- ..+...++..|+++..+.
T Consensus 10 ~~~~ili~g~g~~~-~~~~~a~~~~G~~v~~~~ 41 (391)
T 1kjq_A 10 AATRVMLLGSGELG-KEVAIECQRLGVEVIAVD 41 (391)
T ss_dssp TCCEEEEESCSHHH-HHHHHHHHTTTCEEEEEE
T ss_pred CCCEEEEECCCHHH-HHHHHHHHHcCCEEEEEE
Confidence 45789999887544 445556677898877654
No 436
>2vpi_A GMP synthase; guanine monophosphate synthetase, phosphoprotein, GMP synthetase, GMP biosynthesis, glutamine amidotransferase, ligase, cytoplasm; 2.40A {Homo sapiens}
Probab=32.03 E-value=20 Score=28.13 Aligned_cols=31 Identities=19% Similarity=0.089 Sum_probs=24.0
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhcCCEEEEEC
Q 026776 30 VHVLAVDDSFVDRKVIERLLTISSCKVTAVD 60 (233)
Q Consensus 30 ~~ILIVddd~~~~~~l~~~L~~~g~~v~~a~ 60 (233)
.+|+|+|-...+...+.+.|+..|..+....
T Consensus 25 ~~I~iiD~g~~~~~~i~~~l~~~G~~~~vv~ 55 (218)
T 2vpi_A 25 GAVVILDAGAQYGKVIDRRVRELFVQSEIFP 55 (218)
T ss_dssp TCEEEEECSTTTTHHHHHHHHHTTCCEEEEC
T ss_pred CeEEEEECCCchHHHHHHHHHHCCCEEEEEE
Confidence 5799999776666778888888898776654
No 437
>1iow_A DD-ligase, DDLB, D-ALA\:D-Ala ligase; glycogen phosphorylase, cell WALL, peptidoglycan synthesis, vancomycin, ADP binding; HET: ADP PHY; 1.90A {Escherichia coli} SCOP: c.30.1.2 d.142.1.1 PDB: 1iov_A* 2dln_A* 3v4z_A*
Probab=31.92 E-value=34 Score=27.49 Aligned_cols=53 Identities=8% Similarity=0.018 Sum_probs=33.3
Q ss_pred CcEEEEEeCCHH--------HHHHHHHHHhhcCCEEEEECCHHHHHHHhhhhhhhhccCCCCCcccEEEEcC
Q 026776 29 EVHVLAVDDSFV--------DRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDY 92 (233)
Q Consensus 29 ~~~ILIVddd~~--------~~~~l~~~L~~~g~~v~~a~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~ 92 (233)
+++|+|+.+... ....+...+++.||++..++........+ ....+|+|+.-+
T Consensus 2 ~~~i~il~gg~s~e~~~s~~~~~~l~~al~~~G~~v~~~~~~~~~~~~~-----------~~~~~d~v~~~~ 62 (306)
T 1iow_A 2 TDKIAVLLGGTSAEREVSLNSGAAVLAGLREGGIDAYPVDPKEVDVTQL-----------KSMGFQKVFIAL 62 (306)
T ss_dssp CCEEEEECCCSSTTHHHHHHHHHHHHHHHHHTTCEEEEECTTTSCGGGT-----------TTTTEEEEEECC
T ss_pred CcEEEEEeCCCCccceEcHHhHHHHHHHHHHCCCeEEEEecCchHHHHh-----------hccCCCEEEEcC
Confidence 367888876431 33456777888999998887542111112 335689887654
No 438
>1viz_A PCRB protein homolog; structural genomics, unknown function; 1.85A {Bacillus subtilis} SCOP: c.1.4.1
Probab=31.91 E-value=83 Score=25.09 Aligned_cols=55 Identities=16% Similarity=0.168 Sum_probs=35.4
Q ss_pred cccEEEEcCCCC--CCCHHHHHHHHhccCCCCCCcEEEEeCCCcHHHHHHHHHcCCceEEeCCCCHH
Q 026776 84 KVDLIITDYCMP--GMTGYELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVKLS 148 (233)
Q Consensus 84 ~~DlvllD~~mp--~~~g~~ll~~Lr~~~~~~~~piIvlt~~~~~~~~~~al~~Ga~dyL~KP~~~~ 148 (233)
..|+|.+-..-. -.+.+++++++|+ . .+|+|+++...+ .+..|+|+||.--+..+
T Consensus 33 GaD~ielG~S~Gvt~~~~~~~v~~ir~--~--~~Pivlm~y~~n------~i~~G~dg~iiPdLp~e 89 (240)
T 1viz_A 33 GTDAVIIGGSDGVTEDNVLRMMSKVRR--F--LVPCVLEVSAIE------AIVPGFDLYFIPSVLNS 89 (240)
T ss_dssp CCSEEEECC----CHHHHHHHHHHHTT--S--SSCEEEECSCGG------GCCSCCSEEEEEEETTB
T ss_pred CCCEEEECCCCCCCHHHHHHHHHHhhC--c--CCCEEEecCccc------cccCCCCEEEEcccCcc
Confidence 357777765211 1125677888876 2 899999987742 22789999998655444
No 439
>3pxx_A Carveol dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, NAD, tuberculosis; HET: NAD; 2.00A {Mycobacterium avium} SCOP: c.2.1.0
Probab=31.89 E-value=1.2e+02 Score=23.88 Aligned_cols=35 Identities=11% Similarity=0.075 Sum_probs=28.7
Q ss_pred CCCCcEEEEEeCCHHHHHHHHHHHhhcCCEEEEEC
Q 026776 26 DTEEVHVLAVDDSFVDRKVIERLLTISSCKVTAVD 60 (233)
Q Consensus 26 ~~~~~~ILIVddd~~~~~~l~~~L~~~g~~v~~a~ 60 (233)
+.+.-++||..-...+...+.+.|.+.|+.|..+.
T Consensus 7 ~l~gk~vlVTGas~gIG~~ia~~l~~~G~~V~~~~ 41 (287)
T 3pxx_A 7 RVQDKVVLVTGGARGQGRSHAVKLAEEGADIILFD 41 (287)
T ss_dssp TTTTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEE
T ss_pred ccCCCEEEEeCCCChHHHHHHHHHHHCCCeEEEEc
Confidence 34556789999998899999999999999888764
No 440
>4ef8_A Dihydroorotate dehydrogenase; phenyl isothiocyanate, PYRD, oxidoreductase, oxidoreductase-oxidor inhibitor complex; HET: FMN; 1.56A {Leishmania major} PDB: 3gye_A* 3gz3_A* 4ef9_A* 3tro_A* 3tjx_A*
Probab=31.86 E-value=58 Score=27.67 Aligned_cols=41 Identities=7% Similarity=-0.147 Sum_probs=34.0
Q ss_pred HHHHHHHhccCCCCCCcEEEEeCCCcHHHHHHHHHcCCceEEe
Q 026776 100 YELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIV 142 (233)
Q Consensus 100 ~~ll~~Lr~~~~~~~~piIvlt~~~~~~~~~~al~~Ga~dyL~ 142 (233)
+++++++++... ++|||...+-.+.+++.+++.+||+.+..
T Consensus 265 ~~~i~~v~~~~~--~ipII~~GGI~s~~da~~~l~aGAd~V~v 305 (354)
T 4ef8_A 265 LANINAFYRRCP--GKLIFGCGGVYTGEDAFLHVLAGASMVQV 305 (354)
T ss_dssp HHHHHHHHHHCT--TSEEEEESCCCSHHHHHHHHHHTEEEEEE
T ss_pred HHHHHHHHHhCC--CCCEEEECCcCCHHHHHHHHHcCCCEEEE
Confidence 778888887633 79999998888889999999999988753
No 441
>2dri_A D-ribose-binding protein; sugar transport; HET: RIP; 1.60A {Escherichia coli} SCOP: c.93.1.1 PDB: 1urp_A* 1ba2_A 1dbp_A* 1drj_A* 1drk_A* 2gx6_A*
Probab=31.85 E-value=1.8e+02 Score=22.47 Aligned_cols=63 Identities=13% Similarity=0.141 Sum_probs=34.3
Q ss_pred HHHHHHHhhcCCEEEEECC---HHH---HHHHhhhhhhhhccCCCCCcccEEEEcCCCCCCCHHHHHHHHhccCCCCCCc
Q 026776 43 KVIERLLTISSCKVTAVDS---GRR---ALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKKIKDSSALREIP 116 (233)
Q Consensus 43 ~~l~~~L~~~g~~v~~a~~---~~~---al~~l~~~~~~~~~~~~~~~~DlvllD~~mp~~~g~~ll~~Lr~~~~~~~~p 116 (233)
..+++.++..||.+..+.+ ... .++.+ ....+|-||+...... ...+.++.+++. .+|
T Consensus 21 ~gi~~~~~~~g~~~~~~~~~~~~~~~~~~i~~l-----------~~~~vdgiIi~~~~~~-~~~~~~~~~~~~----~iP 84 (271)
T 2dri_A 21 DGAQKEADKLGYNLVVLDSQNNPAKELANVQDL-----------TVRGTKILLINPTDSD-AVGNAVKMANQA----NIP 84 (271)
T ss_dssp HHHHHHHHHHTCEEEEEECTTCHHHHHHHHHHH-----------TTTTEEEEEECCSSTT-TTHHHHHHHHHT----TCC
T ss_pred HHHHHHHHHcCcEEEEeCCCCCHHHHHHHHHHH-----------HHcCCCEEEEeCCChH-HHHHHHHHHHHC----CCc
Confidence 3445566778998876542 222 23333 4557898887432111 112456666543 567
Q ss_pred EEEEe
Q 026776 117 VVIMS 121 (233)
Q Consensus 117 iIvlt 121 (233)
+|++-
T Consensus 85 vV~i~ 89 (271)
T 2dri_A 85 VITLD 89 (271)
T ss_dssp EEEES
T ss_pred EEEec
Confidence 77764
No 442
>2y88_A Phosphoribosyl isomerase A; aromatic amino acid biosynthesis, TIM-barrel, His biosynthesis, tryptophan biosynthesis; HET: 2ER; 1.33A {Mycobacterium tuberculosis} PDB: 2y89_A 2y85_A*
Probab=31.67 E-value=1e+02 Score=23.92 Aligned_cols=56 Identities=23% Similarity=0.323 Sum_probs=39.1
Q ss_pred cccEE-EEcCCCCCC---CHHHHHHHHhccCCCCCCcEEEEeCCCcHHHHHHHHHc---CCceEEe
Q 026776 84 KVDLI-ITDYCMPGM---TGYELLKKIKDSSALREIPVVIMSSENILARIDRCLED---GAEDFIV 142 (233)
Q Consensus 84 ~~Dlv-llD~~mp~~---~g~~ll~~Lr~~~~~~~~piIvlt~~~~~~~~~~al~~---Ga~dyL~ 142 (233)
.++.| +.+..-.+. -.+++++++++. ..+|||+-.+-...+.+.++++. |++.++.
T Consensus 162 G~~~i~~~~~~~~~~~~g~~~~~~~~l~~~---~~ipvia~GGI~~~~d~~~~~~~~~~Gad~v~v 224 (244)
T 2y88_A 162 GCSRFVVTDITKDGTLGGPNLDLLAGVADR---TDAPVIASGGVSSLDDLRAIATLTHRGVEGAIV 224 (244)
T ss_dssp TCCCEEEEETTTTTTTSCCCHHHHHHHHTT---CSSCEEEESCCCSHHHHHHHHTTGGGTEEEEEE
T ss_pred CCCEEEEEecCCccccCCCCHHHHHHHHHh---CCCCEEEECCCCCHHHHHHHHhhccCCCCEEEE
Confidence 35644 455543221 257888888864 27899988777777888899988 9998764
No 443
>1zgh_A Methionyl-tRNA formyltransferase; southeast collaboratory FO structural genomics, PSI, protein structure initiative, secsg; 2.05A {Clostridium thermocellum} SCOP: b.46.1.1 c.65.1.1
Probab=31.55 E-value=36 Score=27.65 Aligned_cols=55 Identities=7% Similarity=0.098 Sum_probs=32.6
Q ss_pred CCCCcEEEEEeCCHHHHHHHHHHHhh--cCCEEEEECC-HHHHHHHhhhhhhhhccCCCCCcccEEEEc
Q 026776 26 DTEEVHVLAVDDSFVDRKVIERLLTI--SSCKVTAVDS-GRRALQFLGLDEEQSINGFDGLKVDLIITD 91 (233)
Q Consensus 26 ~~~~~~ILIVddd~~~~~~l~~~L~~--~g~~v~~a~~-~~~al~~l~~~~~~~~~~~~~~~~DlvllD 91 (233)
....|+||++..+..+....+++... .+|+|..... ..+.++.+ ....+|+|++=
T Consensus 27 ~~~~m~ill~~~~~~~~~l~q~l~~~l~~~h~V~~~~~~~~~~~~~L-----------~~~~pDliv~~ 84 (260)
T 1zgh_A 27 KAGLMNIIIATTKSWNIKNAQKFKKENESKYNTTIITNKDELTFEKV-----------KLINPEYILFP 84 (260)
T ss_dssp ---CEEEEEECCSHHHHHHHHHHHHHTTTTEEEEEECSGGGCCHHHH-----------HHHCCSEEEES
T ss_pred ccCceEEEEECChHHHHHHHHHHHHHhcccCceEEEeCCCHHHHHHH-----------HhcCCCEEEEe
Confidence 34469999998877766665554332 4677766543 33344555 33468888874
No 444
>4e6p_A Probable sorbitol dehydrogenase (L-iditol 2-dehyd; NAD(P)-binding, structural genomics, PSI-biology; HET: MSE; 2.10A {Sinorhizobium meliloti} PDB: 1k2w_A
Probab=31.55 E-value=1.7e+02 Score=22.74 Aligned_cols=83 Identities=7% Similarity=0.027 Sum_probs=47.6
Q ss_pred CCCcEEEEEeCCHHHHHHHHHHHhhcCCEEEEECCHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCCCCCHH-HHHHH
Q 026776 27 TEEVHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGY-ELLKK 105 (233)
Q Consensus 27 ~~~~~ILIVddd~~~~~~l~~~L~~~g~~v~~a~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp~~~g~-~ll~~ 105 (233)
.+..++||..-...+...+.+.|.+.|++|.......+.++.+... .......+-+|+ .+.+.+ ++++.
T Consensus 6 l~~k~vlVTGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~--------~~~~~~~~~~D~--~~~~~v~~~~~~ 75 (259)
T 4e6p_A 6 LEGKSALITGSARGIGRAFAEAYVREGATVAIADIDIERARQAAAE--------IGPAAYAVQMDV--TRQDSIDAAIAA 75 (259)
T ss_dssp TTTCEEEEETCSSHHHHHHHHHHHHTTCEEEEEESCHHHHHHHHHH--------HCTTEEEEECCT--TCHHHHHHHHHH
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHH--------hCCCceEEEeeC--CCHHHHHHHHHH
Confidence 3456789999998899999999989999887765333333322110 011233444444 444333 35555
Q ss_pred HhccCCCCCCcEEEEe
Q 026776 106 IKDSSALREIPVVIMS 121 (233)
Q Consensus 106 Lr~~~~~~~~piIvlt 121 (233)
+.+... .+-+++-.
T Consensus 76 ~~~~~g--~id~lv~~ 89 (259)
T 4e6p_A 76 TVEHAG--GLDILVNN 89 (259)
T ss_dssp HHHHSS--SCCEEEEC
T ss_pred HHHHcC--CCCEEEEC
Confidence 655433 55555554
No 445
>1xea_A Oxidoreductase, GFO/IDH/MOCA family; structural genomics, protein structure initiative, NYSGXRC, VCA1048, GFO/IDH/MOCA family oxidoreductase; 2.65A {Vibrio cholerae} SCOP: c.2.1.3 d.81.1.5
Probab=31.53 E-value=1.4e+02 Score=24.27 Aligned_cols=46 Identities=13% Similarity=0.245 Sum_probs=29.3
Q ss_pred CCcEEEEeCCC--cHHHHHHHHHcCCceEEeCCCC--HHHHHHHHHHHhh
Q 026776 114 EIPVVIMSSEN--ILARIDRCLEDGAEDFIVKPVK--LSDVKRIKDYLTR 159 (233)
Q Consensus 114 ~~piIvlt~~~--~~~~~~~al~~Ga~dyL~KP~~--~~eL~~~~~~l~~ 159 (233)
.+-+|+++... ..+.+..++++|..=|+.||+. .++..++.+...+
T Consensus 63 ~~D~V~i~tp~~~h~~~~~~al~~Gk~V~~EKP~~~~~~~~~~l~~~a~~ 112 (323)
T 1xea_A 63 GVDAVMIHAATDVHSTLAAFFLHLGIPTFVDKPLAASAQECENLYELAEK 112 (323)
T ss_dssp CCSEEEECSCGGGHHHHHHHHHHTTCCEEEESCSCSSHHHHHHHHHHHHH
T ss_pred CCCEEEEECCchhHHHHHHHHHHCCCeEEEeCCCcCCHHHHHHHHHHHHh
Confidence 34445554433 3456668899998888999964 5566666655543
No 446
>2kx7_A Sensor-like histidine kinase YOJN; alpha-beta-loop (ABL) domain, phosphotransfer, RCS regulatio two-component system, protein binding; NMR {Escherichia coli}
Probab=31.46 E-value=88 Score=22.06 Aligned_cols=90 Identities=14% Similarity=0.134 Sum_probs=56.4
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHhhcCCEEEEECCHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCCCCCHHHHHHHHh
Q 026776 28 EEVHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKKIK 107 (233)
Q Consensus 28 ~~~~ILIVddd~~~~~~l~~~L~~~g~~v~~a~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp~~~g~~ll~~Lr 107 (233)
..+.+++==-++.++..+.+.|..+|-.+...+.. .....+|++|.|-.
T Consensus 6 dgVt~lLdIts~Eir~IV~~~L~~~GA~~i~~der-----------------~~~~eyDi~lTDnp-------------- 54 (117)
T 2kx7_A 6 DDVCVMVDVTSAEIRNIVTRQLENWGATCITPDER-----------------LISQDYDIFLTDNP-------------- 54 (117)
T ss_dssp SSEEEEEECSSHHHHHHHHHHHHHHTEEEECCCSS-----------------SSCCCCSEEEEESG--------------
T ss_pred cCcEEEEEcCcHHHHHHHHHHHHhcCCeEEecccc-----------------CCCCcccEEEecCc--------------
Confidence 35778887789999999999999999776655320 13567999999952
Q ss_pred ccCCCCCCcEEEEeCCCcHHHHHHHHHcCCceEEeCCCCHHH-HHHHHHHH
Q 026776 108 DSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVKLSD-VKRIKDYL 157 (233)
Q Consensus 108 ~~~~~~~~piIvlt~~~~~~~~~~al~~Ga~dyL~KP~~~~e-L~~~~~~l 157 (233)
.......+.+++... .++.=...|+.--|.... +..++..+
T Consensus 55 ---~~~~~~tLLL~~d~~------G~~~l~p~~irvNyN~s~alidAIllL 96 (117)
T 2kx7_A 55 ---SNLTASGLLLSDDES------GVREIGPGQLCVNFNMSNAMQEAVLQL 96 (117)
T ss_dssp ---GGCSSSEEEECTTCS------SEEEEETTEEEECSSCHHHHHHHHHHH
T ss_pred ---cccCcCeEEEecCcc------cccccCCCeEEEeccchHHHHHHHHHH
Confidence 111456777776542 111223456666665444 44444333
No 447
>1s3l_A Hypothetical protein MJ0936; phosphodiesterase, nuclease, structural genomics, BSGC struc funded by NIH; 2.40A {Methanocaldococcus jannaschii} SCOP: d.159.1.7 PDB: 1s3m_A 1s3n_A 2ahd_A
Probab=31.45 E-value=1e+02 Score=23.13 Aligned_cols=36 Identities=11% Similarity=0.108 Sum_probs=21.2
Q ss_pred cccEEEEcCCCCCCCHHHHHHHHhccCCCCCCcEEEEeCCCcH
Q 026776 84 KVDLIITDYCMPGMTGYELLKKIKDSSALREIPVVIMSSENIL 126 (233)
Q Consensus 84 ~~DlvllD~~mp~~~g~~ll~~Lr~~~~~~~~piIvlt~~~~~ 126 (233)
.+|+|++-=.+-+. ++++.|++. ..+++++.++.+.
T Consensus 52 ~~D~ii~~GDl~~~---~~~~~l~~l----~~~~~~V~GNhD~ 87 (190)
T 1s3l_A 52 NVETVIHCGDFVSL---FVIKEFENL----NANIIATYGNNDG 87 (190)
T ss_dssp CCSEEEECSCCCST---HHHHHGGGC----SSEEEEECCTTCC
T ss_pred CCCEEEECCCCCCH---HHHHHHHhc----CCCEEEEeCCCcc
Confidence 47777763222221 567777643 4578888777653
No 448
>4amg_A Snogd; transferase, polyketide biosynthesis, GT1 family, nogalamyci; HET: MLY; 2.59A {Streptomyces nogalater} PDB: 4an4_A* 4amb_A*
Probab=31.44 E-value=41 Score=27.98 Aligned_cols=51 Identities=12% Similarity=0.168 Sum_probs=24.2
Q ss_pred eeeeccccccCCCCCC--CCCcEEEEEeC----CHHHHHHHHHHHhhcCCEEEEECC
Q 026776 11 RLISDEIDGFDLSPSD--TEEVHVLAVDD----SFVDRKVIERLLTISSCKVTAVDS 61 (233)
Q Consensus 11 ~~~~~~~~~~~~~~~~--~~~~~ILIVdd----d~~~~~~l~~~L~~~g~~v~~a~~ 61 (233)
|++++---+.|+..++ .+.||||++-- +-.-...|.+.|...||+|+.+..
T Consensus 2 ~~~~~~~~~~~~g~~~~~~~~MRIL~~~~p~~GHv~P~l~LA~~L~~rGh~Vt~~t~ 58 (400)
T 4amg_A 2 HHHHHHSSGVDLGTENLYFQSMRALFITSPGLSHILPTVPLAQALRALGHEVRYATG 58 (400)
T ss_dssp -------------------CCCEEEEECCSSHHHHGGGHHHHHHHHHTTCEEEEEEC
T ss_pred CcccCCCCCccCCcccCCCCCCeEEEECCCchhHHHHHHHHHHHHHHCCCEEEEEeC
Confidence 3344433445554442 56799999853 222334567788889999988754
No 449
>4dyv_A Short-chain dehydrogenase/reductase SDR; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 1.80A {Xanthobacter autotrophicus}
Probab=31.32 E-value=75 Score=25.30 Aligned_cols=40 Identities=13% Similarity=0.009 Sum_probs=29.0
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHhhcCCEEEEECCHHHHHH
Q 026776 28 EEVHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQ 67 (233)
Q Consensus 28 ~~~~ILIVddd~~~~~~l~~~L~~~g~~v~~a~~~~~al~ 67 (233)
.+-.+||..-...+...+.+.|.+.|+.|..+....+.++
T Consensus 27 ~~k~~lVTGas~GIG~aia~~la~~G~~V~~~~r~~~~~~ 66 (272)
T 4dyv_A 27 GKKIAIVTGAGSGVGRAVAVALAGAGYGVALAGRRLDALQ 66 (272)
T ss_dssp -CCEEEETTTTSHHHHHHHHHHHHTTCEEEEEESCHHHHH
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEECCHHHHH
Confidence 3456777788888889999999899998887654344333
No 450
>3ioy_A Short-chain dehydrogenase/reductase SDR; structural genomics, oxidoreductase, PSI-2, protein structure initiative; 1.90A {Novosphingobium aromaticivorans DSM12444}
Probab=31.32 E-value=2.1e+02 Score=23.18 Aligned_cols=33 Identities=18% Similarity=0.122 Sum_probs=27.3
Q ss_pred CCcEEEEEeCCHHHHHHHHHHHhhcCCEEEEEC
Q 026776 28 EEVHVLAVDDSFVDRKVIERLLTISSCKVTAVD 60 (233)
Q Consensus 28 ~~~~ILIVddd~~~~~~l~~~L~~~g~~v~~a~ 60 (233)
+.-+|||..-...+...+...|.+.|+.|..+.
T Consensus 7 ~~k~vlVTGas~gIG~~la~~l~~~G~~Vv~~~ 39 (319)
T 3ioy_A 7 AGRTAFVTGGANGVGIGLVRQLLNQGCKVAIAD 39 (319)
T ss_dssp TTCEEEEETTTSTHHHHHHHHHHHTTCEEEEEE
T ss_pred CCCEEEEcCCchHHHHHHHHHHHHCCCEEEEEE
Confidence 455799999988889999989988999887754
No 451
>3k9c_A Transcriptional regulator, LACI family protein; PSI-II, 11026W, structural genomics, PR structure initiative; 2.14A {Rhodococcus jostii}
Probab=31.19 E-value=1.3e+02 Score=23.60 Aligned_cols=31 Identities=13% Similarity=-0.012 Sum_probs=16.7
Q ss_pred CCcEEEEEe-CCHHHHH---HHHHHHhhcCCEEEEE
Q 026776 28 EEVHVLAVD-DSFVDRK---VIERLLTISSCKVTAV 59 (233)
Q Consensus 28 ~~~~ILIVd-dd~~~~~---~l~~~L~~~g~~v~~a 59 (233)
..+-|++ + +++.+.. .+++.+++.||.+..+
T Consensus 13 ~~Igvi~-~~~~~~~~~~~~gi~~~a~~~g~~~~~~ 47 (289)
T 3k9c_A 13 RLLGVVF-ELQQPFHGDLVEQIYAAATRRGYDVMLS 47 (289)
T ss_dssp CEEEEEE-ETTCHHHHHHHHHHHHHHHHTTCEEEEE
T ss_pred CEEEEEE-ecCCchHHHHHHHHHHHHHHCCCEEEEE
Confidence 3455555 4 3444433 3445566778877654
No 452
>3vnd_A TSA, tryptophan synthase alpha chain; psychrophilic enzyme, cold adaptation; HET: PE8; 2.60A {Shewanella frigidimarina}
Probab=31.16 E-value=1.7e+02 Score=23.66 Aligned_cols=43 Identities=12% Similarity=0.128 Sum_probs=32.1
Q ss_pred HHHHHHHHhccCCCCCCcEEEEeCCCcHHHHHHHHHcCCceEEeCC
Q 026776 99 GYELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKP 144 (233)
Q Consensus 99 g~~ll~~Lr~~~~~~~~piIvlt~~~~~~~~~~al~~Ga~dyL~KP 144 (233)
-.++++++|+.. ++|+++=.+-.+.+.+.+++..|||+++.-.
T Consensus 194 ~~~~v~~vr~~~---~~pv~vGfGI~~~e~~~~~~~~gADgvVVGS 236 (267)
T 3vnd_A 194 IENILTQLAEFN---APPPLLGFGIAEPEQVRAAIKAGAAGAISGS 236 (267)
T ss_dssp HHHHHHHHHTTT---CCCEEECSSCCSHHHHHHHHHTTCSEEEECH
T ss_pred HHHHHHHHHHhc---CCCEEEECCcCCHHHHHHHHHcCCCEEEECH
Confidence 356788888752 6788765555567777779999999999864
No 453
>1jub_A Dihydroorotate dehydrogenase A; homodimer, alpha-beta barrel, flavoprotein, mutant enzyme, oxidoreductase; HET: FMN; 1.40A {Lactococcus lactis} SCOP: c.1.4.1 PDB: 1ovd_A* 1jue_A* 1dor_A* 2bsl_A* 2bx7_A* 2dor_A* 1jqv_A* 1jrb_A* 1jrc_A* 1jqx_A*
Probab=30.93 E-value=91 Score=25.38 Aligned_cols=69 Identities=12% Similarity=0.052 Sum_probs=0.0
Q ss_pred CCHHHHHHHhhhhhhhhccCCCCCccc-EEEEcCCCCCCCH-----------HHHHHHHhccCCCCCCcEEE-EeCCCcH
Q 026776 60 DSGRRALQFLGLDEEQSINGFDGLKVD-LIITDYCMPGMTG-----------YELLKKIKDSSALREIPVVI-MSSENIL 126 (233)
Q Consensus 60 ~~~~~al~~l~~~~~~~~~~~~~~~~D-lvllD~~mp~~~g-----------~~ll~~Lr~~~~~~~~piIv-lt~~~~~ 126 (233)
++..++.+.+ ....+| .|-+.+..|...| .++++++|+.. ..|+++ ++...+.
T Consensus 106 ~~~~~~a~~~-----------~~~g~d~~iein~~~P~~~g~~~~g~~~e~~~~iv~~vr~~~---~~Pv~vKi~~~~~~ 171 (311)
T 1jub_A 106 AENIAMLKKI-----------QESDFSGITELNLSCPNVPGEPQLAYDFEATEKLLKEVFTFF---TKPLGVKLPPYFDL 171 (311)
T ss_dssp HHHHHHHHHH-----------HHSCCCSEEEEESCCCCSSSCCCGGGCHHHHHHHHHHHTTTC---CSCEEEEECCCCSH
T ss_pred HHHHHHHHHH-----------HhcCCCeEEEEeccCCCCCCcccccCCHHHHHHHHHHHHHhc---CCCEEEEECCCCCH
Q ss_pred HH----HHHHHHcCCceEEe
Q 026776 127 AR----IDRCLEDGAEDFIV 142 (233)
Q Consensus 127 ~~----~~~al~~Ga~dyL~ 142 (233)
+. +..+.++|++.+..
T Consensus 172 ~~~~~~a~~~~~~G~d~i~v 191 (311)
T 1jub_A 172 VHFDIMAEILNQFPLTYVNS 191 (311)
T ss_dssp HHHHHHHHHHTTSCCCEEEE
T ss_pred HHHHHHHHHHHHcCCcEEEe
No 454
>1y81_A Conserved hypothetical protein; hyperthermophIle, structural genomics, PSI, protein structure initiative; HET: COA; 1.70A {Pyrococcus furiosus} SCOP: c.2.1.8
Probab=30.88 E-value=69 Score=22.92 Aligned_cols=103 Identities=17% Similarity=0.136 Sum_probs=50.0
Q ss_pred CCcEEEEEeCC---HHHHHHHHHHHhhcCCEEEEECCHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCCCCCHHHHHH
Q 026776 28 EEVHVLAVDDS---FVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLK 104 (233)
Q Consensus 28 ~~~~ILIVddd---~~~~~~l~~~L~~~g~~v~~a~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp~~~g~~ll~ 104 (233)
++.+|.||.-. ......+.+.|.+.||+++.++...+.+. ......-... ....+|++++-+ |...-.++++
T Consensus 13 ~p~~IavIGaS~~~g~~G~~~~~~L~~~G~~V~~vnp~~~~i~--G~~~~~s~~e-l~~~vDlvii~v--p~~~v~~v~~ 87 (138)
T 1y81_A 13 EFRKIALVGASKNPAKYGNIILKDLLSKGFEVLPVNPNYDEIE--GLKCYRSVRE-LPKDVDVIVFVV--PPKVGLQVAK 87 (138)
T ss_dssp -CCEEEEETCCSCTTSHHHHHHHHHHHTTCEEEEECTTCSEET--TEECBSSGGG-SCTTCCEEEECS--CHHHHHHHHH
T ss_pred CCCeEEEEeecCCCCCHHHHHHHHHHHCCCEEEEeCCCCCeEC--CeeecCCHHH-hCCCCCEEEEEe--CHHHHHHHHH
Confidence 45789999762 23445555667778998777654221110 0000000000 122477777743 4444555665
Q ss_pred HHhccCCCCCCcEEEEeCCCcHHHHHHHHHcCCc
Q 026776 105 KIKDSSALREIPVVIMSSENILARIDRCLEDGAE 138 (233)
Q Consensus 105 ~Lr~~~~~~~~piIvlt~~~~~~~~~~al~~Ga~ 138 (233)
.+-+... . -+++.++....+....+.+.|+.
T Consensus 88 ~~~~~g~--~-~i~~~~~~~~~~l~~~a~~~Gi~ 118 (138)
T 1y81_A 88 EAVEAGF--K-KLWFQPGAESEEIRRFLEKAGVE 118 (138)
T ss_dssp HHHHTTC--C-EEEECTTSCCHHHHHHHHHHTCE
T ss_pred HHHHcCC--C-EEEEcCccHHHHHHHHHHHCCCE
Confidence 5544321 1 24444444444555555556654
No 455
>3o4f_A Spermidine synthase; aminopropyltransferase, polyamine synthase, rossmann fold, P biosynthesis, spermidine biosynthesis, transferase; 2.90A {Escherichia coli}
Probab=30.82 E-value=48 Score=27.43 Aligned_cols=55 Identities=16% Similarity=0.135 Sum_probs=29.1
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhc--C----CEE-EEECCHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCCC
Q 026776 30 VHVLAVDDSFVDRKVIERLLTIS--S----CKV-TAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPG 96 (233)
Q Consensus 30 ~~ILIVddd~~~~~~l~~~L~~~--g----~~v-~~a~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp~ 96 (233)
-+|-+||=|+.+.+..+++|... | -++ ....|+.+.++. ....||+||+|..-|.
T Consensus 108 ~~v~~VEID~~Vv~~a~~~lp~~~~~~~~dpRv~v~~~Dg~~~l~~------------~~~~yDvIi~D~~dp~ 169 (294)
T 3o4f_A 108 ESITMVEIDAGVVSFCRQYLPNHNAGSYDDPRFKLVIDDGVNFVNQ------------TSQTFDVIISDCTDPI 169 (294)
T ss_dssp CEEEEEESCHHHHHHHHHHCHHHHTTGGGCTTEEEEESCTTTTTSC------------SSCCEEEEEESCCCCC
T ss_pred ceEEEEcCCHHHHHHHHhcCccccccccCCCcEEEEechHHHHHhh------------ccccCCEEEEeCCCcC
Confidence 35666666666666666665321 1 112 123343322211 2357999999986553
No 456
>2ioy_A Periplasmic sugar-binding protein; ribose binding protein, thermophilic proteins; HET: RIP; 1.90A {Thermoanaerobacter tengcongensis}
Probab=30.76 E-value=1.5e+02 Score=23.06 Aligned_cols=64 Identities=19% Similarity=0.231 Sum_probs=33.3
Q ss_pred HHHHHHHHhhcCCEEEEECC---HHH---HHHHhhhhhhhhccCCCCCcccEEEEcCCCCCCCHHHHHHHHhccCCCCCC
Q 026776 42 RKVIERLLTISSCKVTAVDS---GRR---ALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKKIKDSSALREI 115 (233)
Q Consensus 42 ~~~l~~~L~~~g~~v~~a~~---~~~---al~~l~~~~~~~~~~~~~~~~DlvllD~~mp~~~g~~ll~~Lr~~~~~~~~ 115 (233)
...+++.+++.||.+..+.+ .+. .++.+ ....+|-||+-...+. ...+.++.+++. .+
T Consensus 20 ~~gi~~~~~~~g~~~~~~~~~~~~~~~~~~i~~l-----------~~~~vdgiIi~~~~~~-~~~~~~~~~~~~----~i 83 (283)
T 2ioy_A 20 KNGAEEKAKELGYKIIVEDSQNDSSKELSNVEDL-----------IQQKVDVLLINPVDSD-AVVTAIKEANSK----NI 83 (283)
T ss_dssp HHHHHHHHHHHTCEEEEEECTTCHHHHHHHHHHH-----------HHTTCSEEEECCSSTT-TTHHHHHHHHHT----TC
T ss_pred HHHHHHHHHhcCcEEEEecCCCCHHHHHHHHHHH-----------HHcCCCEEEEeCCchh-hhHHHHHHHHHC----CC
Confidence 33445566778998876542 222 23333 2346888777322111 112456666543 56
Q ss_pred cEEEEe
Q 026776 116 PVVIMS 121 (233)
Q Consensus 116 piIvlt 121 (233)
|+|++.
T Consensus 84 PvV~~~ 89 (283)
T 2ioy_A 84 PVITID 89 (283)
T ss_dssp CEEEES
T ss_pred eEEEec
Confidence 777663
No 457
>1w5q_A Delta-aminolevulinic acid dehydratase; synthase, evolution, metalloenzyme, porphobilinogen synthase, protein engineering,; 1.4A {Pseudomonas aeruginosa} PDB: 1w5p_A* 1w5o_A 1w5n_A 1w56_A 1w5m_A 1w54_A 1gzg_A* 1b4k_A 2woq_A* 2c14_A* 2c16_A* 2c19_A* 2c15_A* 2c18_A* 2c13_A*
Probab=30.72 E-value=56 Score=27.50 Aligned_cols=65 Identities=18% Similarity=0.322 Sum_probs=45.7
Q ss_pred CHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCCCCCHHHHHHHHhccCCCCCCcEEEEeCCCcHHHHHHHHHcCCce
Q 026776 61 SGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAED 139 (233)
Q Consensus 61 ~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp~~~g~~ll~~Lr~~~~~~~~piIvlt~~~~~~~~~~al~~Ga~d 139 (233)
|..||+..+..+-+ +..|+|++- |++-=+++++.+++.. .+|+.++--++....+..|.+.|..|
T Consensus 238 N~~EAlrE~~~Di~--------EGAD~vMVK---Pal~YLDIir~vk~~~---~~PvaaYqVSGEYAMikaAa~~GwiD 302 (337)
T 1w5q_A 238 NSDEALHEVAADLA--------EGADMVMVK---PGMPYLDIVRRVKDEF---RAPTFVYQVSGEYAMHMGAIQNGWLA 302 (337)
T ss_dssp CSHHHHHHHHHHHH--------TTCSEEEEE---SCGGGHHHHHHHHHHH---CSCEEEEECHHHHHHHHHHHHTTSSC
T ss_pred ChHHHHHHHHhhHH--------hCCCEEEEc---CCCchHHHHHHHHHhc---CCCEEEEEcCcHHHHHHHHHHcCCcc
Confidence 34566655544322 347999886 6677788999999864 78999887777666677777777655
No 458
>1yxy_A Putative N-acetylmannosamine-6-phosphate 2-epimer; structural genomics, epimerase, PSI, structure initiative; 1.60A {Streptococcus pyogenes} SCOP: c.1.2.5
Probab=30.70 E-value=80 Score=24.44 Aligned_cols=41 Identities=12% Similarity=0.172 Sum_probs=32.8
Q ss_pred HHHHHHHHhccCCCCCCcEEEEeCCCcHHHHHHHHHcCCceEEeC
Q 026776 99 GYELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVK 143 (233)
Q Consensus 99 g~~ll~~Lr~~~~~~~~piIvlt~~~~~~~~~~al~~Ga~dyL~K 143 (233)
.+++++++++. .+|+++..+-.+.+.+.+++++|++.++.=
T Consensus 175 ~~~~i~~~~~~----~ipvia~GGI~s~~~~~~~~~~Gad~v~vG 215 (234)
T 1yxy_A 175 DVALIEALCKA----GIAVIAEGKIHSPEEAKKINDLGVAGIVVG 215 (234)
T ss_dssp CHHHHHHHHHT----TCCEEEESCCCSHHHHHHHHTTCCSEEEEC
T ss_pred CHHHHHHHHhC----CCCEEEECCCCCHHHHHHHHHCCCCEEEEc
Confidence 46778888763 688888777777889999999999998653
No 459
>2rgy_A Transcriptional regulator, LACI family; 11011J, NYSGXRC, transctiptional regulator, SUG binding protein, structural genomics, PSI-2; 2.05A {Burkholderia phymatum}
Probab=30.70 E-value=95 Score=24.42 Aligned_cols=15 Identities=13% Similarity=0.023 Sum_probs=7.8
Q ss_pred HHHHHhhcCCEEEEE
Q 026776 45 IERLLTISSCKVTAV 59 (233)
Q Consensus 45 l~~~L~~~g~~v~~a 59 (233)
+++.+++.||.+..+
T Consensus 30 i~~~a~~~g~~~~~~ 44 (290)
T 2rgy_A 30 TDLELRAVHRHVVVA 44 (290)
T ss_dssp HHHHHHHTTCEEEEE
T ss_pred HHHHHHHCCCEEEEE
Confidence 344445566665544
No 460
>3inp_A D-ribulose-phosphate 3-epimerase; IDP02542, isomerase, struc genomics, center for structural genomics of infectious DISE csgid; 2.05A {Francisella tularensis subsp}
Probab=30.51 E-value=36 Score=27.35 Aligned_cols=58 Identities=19% Similarity=0.244 Sum_probs=34.5
Q ss_pred cccEEEEcCCCCCCCH-------HHHHHHHhccCC--CCCCcEEEEeCCCcHHHHHHHHHcCCceEEe
Q 026776 84 KVDLIITDYCMPGMTG-------YELLKKIKDSSA--LREIPVVIMSSENILARIDRCLEDGAEDFIV 142 (233)
Q Consensus 84 ~~DlvllD~~mp~~~g-------~~ll~~Lr~~~~--~~~~piIvlt~~~~~~~~~~al~~Ga~dyL~ 142 (233)
.+|+|++=..-|+..| ++-++++|+... ....+ |.+.+.-+.+.+..+.++|||-++.
T Consensus 156 ~vD~VlvMsV~PGfgGQ~fi~~~l~KI~~lr~~~~~~~~~~~-I~VDGGI~~~ti~~~~~aGAD~~V~ 222 (246)
T 3inp_A 156 NIDRVLIMSVNPGFGGQKFIPAMLDKAKEISKWISSTDRDIL-LEIDGGVNPYNIAEIAVCGVNAFVA 222 (246)
T ss_dssp GCSEEEEECSCTTC--CCCCTTHHHHHHHHHHHHHHHTSCCE-EEEESSCCTTTHHHHHTTTCCEEEE
T ss_pred cCCEEEEeeecCCCCCcccchHHHHHHHHHHHHHHhcCCCee-EEEECCcCHHHHHHHHHcCCCEEEE
Confidence 4677776444565544 455666665321 11344 4455555567788899999999875
No 461
>3g8r_A Probable spore coat polysaccharide biosynthesis P; structural genomics, protein structure initiative; 2.49A {Chromobacterium violaceum atcc 12472}
Probab=30.33 E-value=2.1e+02 Score=24.23 Aligned_cols=76 Identities=16% Similarity=0.233 Sum_probs=51.5
Q ss_pred HHHHHHHHHhhcCCEEEEECCHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCCCCCHHHHHHHHhccCCCCCCcEEEE
Q 026776 41 DRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKKIKDSSALREIPVVIM 120 (233)
Q Consensus 41 ~~~~l~~~L~~~g~~v~~a~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp~~~g~~ll~~Lr~~~~~~~~piIvl 120 (233)
....|.++-++.|..+.+-.-..+.++.+. .+++=++=+.-.++.-+.+++.+-+. ..|||+=
T Consensus 79 ~~~~L~~~~~~~Gi~~~st~fD~~svd~l~-------------~~~v~~~KI~S~~~~N~pLL~~va~~----gKPviLs 141 (350)
T 3g8r_A 79 QMQKLVAEMKANGFKAICTPFDEESVDLIE-------------AHGIEIIKIASCSFTDWPLLERIARS----DKPVVAS 141 (350)
T ss_dssp HHHHHHHHHHHTTCEEEEEECSHHHHHHHH-------------HTTCCEEEECSSSTTCHHHHHHHHTS----CSCEEEE
T ss_pred HHHHHHHHHHHcCCcEEeccCCHHHHHHHH-------------HcCCCEEEECcccccCHHHHHHHHhh----CCcEEEE
Confidence 345566666778987776554456666662 23344445566688899999999864 6799988
Q ss_pred eCCCcHHHHHHHH
Q 026776 121 SSENILARIDRCL 133 (233)
Q Consensus 121 t~~~~~~~~~~al 133 (233)
|+-...+++..+.
T Consensus 142 tGmstl~Ei~~Av 154 (350)
T 3g8r_A 142 TAGARREDIDKVV 154 (350)
T ss_dssp CTTCCHHHHHHHH
T ss_pred CCCCCHHHHHHHH
Confidence 8877776665554
No 462
>1vcf_A Isopentenyl-diphosphate delta-isomerase; TIM barrel, structural genomics, riken structural genomics/P initiative, RSGI; HET: FMN; 2.60A {Thermus thermophilus} SCOP: c.1.4.1 PDB: 1vcg_A* 3dh7_A*
Probab=30.23 E-value=2.3e+02 Score=23.30 Aligned_cols=47 Identities=15% Similarity=0.221 Sum_probs=35.9
Q ss_pred CHHHHHHHHhccCCCCCCcEEEEeCCCcHHHHHHHHHcCCceEEe-CCCC
Q 026776 98 TGYELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIV-KPVK 146 (233)
Q Consensus 98 ~g~~ll~~Lr~~~~~~~~piIvlt~~~~~~~~~~al~~Ga~dyL~-KP~~ 146 (233)
..++++.++++.-. ++|||+..+-.+..++.+++..||+.+.. .|+-
T Consensus 242 ~~~~~l~~v~~~~~--~ipvia~GGI~~~~d~~kal~~GAd~V~igr~~l 289 (332)
T 1vcf_A 242 PTARAILEVREVLP--HLPLVASGGVYTGTDGAKALALGADLLAVARPLL 289 (332)
T ss_dssp BHHHHHHHHHHHCS--SSCEEEESSCCSHHHHHHHHHHTCSEEEECGGGH
T ss_pred cHHHHHHHHHHhcC--CCeEEEECCCCCHHHHHHHHHhCCChHhhhHHHH
Confidence 45677777776433 68999988888999999999999998744 4443
No 463
>2xhz_A KDSD, YRBH, arabinose 5-phosphate isomerase; lipopolysaccharide biogenesis; 2.60A {Escherichia coli}
Probab=30.21 E-value=1.6e+02 Score=21.44 Aligned_cols=96 Identities=15% Similarity=0.099 Sum_probs=52.3
Q ss_pred EEEEEeC--CHHHHHHHHHHHhhcCCEEEEECCHHHHHHHhhhhhhhhccCCCCCcccEEEE-cCCCCCCCHHHHHHHHh
Q 026776 31 HVLAVDD--SFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIIT-DYCMPGMTGYELLKKIK 107 (233)
Q Consensus 31 ~ILIVdd--d~~~~~~l~~~L~~~g~~v~~a~~~~~al~~l~~~~~~~~~~~~~~~~Dlvll-D~~mp~~~g~~ll~~Lr 107 (233)
+|+++.- .......+...|...|..+....+.......+. .-.+=|++|+ ...--..+-+++++.++
T Consensus 51 ~I~i~G~G~S~~~a~~~~~~l~~~g~~~~~~~~~~~~~~~~~----------~~~~~d~vI~iS~sG~t~~~~~~~~~ak 120 (183)
T 2xhz_A 51 KVVVMGMGASGHIGRKMAATFASTGTPSFFVHPGEAAHGDLG----------MVTPQDVVIAISNSGESSEITALIPVLK 120 (183)
T ss_dssp CEEEEECHHHHHHHHHHHHHHHTTTCCEEECCTTHHHHHTST----------TCCTTCEEEEECSSSCCHHHHHHHHHHH
T ss_pred eEEEEeecHHHHHHHHHHHHHHhcCceEEEeCchHHhhhhhc----------cCCCCCEEEEEeCCCCCHHHHHHHHHHH
Confidence 4555543 445555666667777877776665443322211 1112354443 33222234567777777
Q ss_pred ccCCCCCCcEEEEeCCCcHHHHHHHHHcCCceEEeCCC
Q 026776 108 DSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPV 145 (233)
Q Consensus 108 ~~~~~~~~piIvlt~~~~~~~~~~al~~Ga~dyL~KP~ 145 (233)
+. ..++|++|........ .-+|.+|.-|.
T Consensus 121 ~~----g~~vi~IT~~~~s~la-----~~ad~~l~~~~ 149 (183)
T 2xhz_A 121 RL----HVPLICITGRPESSMA-----RAADVHLCVKV 149 (183)
T ss_dssp TT----TCCEEEEESCTTSHHH-----HHSSEEEECCC
T ss_pred HC----CCCEEEEECCCCChhH-----HhCCEEEEeCC
Confidence 64 6789999987654322 22566665553
No 464
>3n0w_A ABC branched chain amino acid family transporter, periplasmic ligand binding protein...; receptor family ligand binding region; HET: MSE; 1.88A {Burkholderia xenovorans}
Probab=30.16 E-value=1.4e+02 Score=24.48 Aligned_cols=60 Identities=15% Similarity=0.178 Sum_probs=36.0
Q ss_pred HHHHHHHHhhcCCEEEE---E----CCHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCCCCCHHHHHHHHhccCCCCC
Q 026776 42 RKVIERLLTISSCKVTA---V----DSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKKIKDSSALRE 114 (233)
Q Consensus 42 ~~~l~~~L~~~g~~v~~---a----~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp~~~g~~ll~~Lr~~~~~~~ 114 (233)
.+.+++.++..|..+.. + .+....+..+ ....+|+|++.. ...+...+++.+++... .
T Consensus 159 ~~~~~~~~~~~G~~v~~~~~~~~~~~d~~~~l~~i-----------~~~~~d~v~~~~--~~~~~~~~~~~~~~~g~--~ 223 (379)
T 3n0w_A 159 NAAIRRELTAGGGQIVGSVRFPFETQDFSSYLLQA-----------KASGAQLIVSTS--GGAANINIMKQAREFGL--P 223 (379)
T ss_dssp HHHHHHHHHHHTCEEEEEEEECTTCCCCHHHHHHH-----------HHHTCSEEEECC--CHHHHHHHHHHHHHTTC--S
T ss_pred HHHHHHHHHHcCCEEEEEEeCCCCCCCHHHHHHHH-----------HHCCCCEEEEec--ccchHHHHHHHHHHcCC--C
Confidence 44556667777876643 2 2444555555 234689999853 22455678888887654 4
Q ss_pred Cc
Q 026776 115 IP 116 (233)
Q Consensus 115 ~p 116 (233)
.+
T Consensus 224 ~~ 225 (379)
T 3n0w_A 224 SK 225 (379)
T ss_dssp CS
T ss_pred CC
Confidence 55
No 465
>1m72_A Caspase-1; caspase, cysteine protease, hydrolase-hydrolase inhibitor CO; 2.30A {Spodoptera frugiperda} SCOP: c.17.1.1 PDB: 3sip_B
Probab=30.10 E-value=2e+02 Score=23.17 Aligned_cols=31 Identities=23% Similarity=0.313 Sum_probs=23.1
Q ss_pred HHHHHHHHHHHhhcCCEEEEEC--CHHHHHHHh
Q 026776 39 FVDRKVIERLLTISSCKVTAVD--SGRRALQFL 69 (233)
Q Consensus 39 ~~~~~~l~~~L~~~g~~v~~a~--~~~~al~~l 69 (233)
....+.|...|+.+||+|.... +.++..+.+
T Consensus 55 ~~Da~~L~~~f~~LGF~V~~~~dlt~~em~~~l 87 (272)
T 1m72_A 55 NVDSDNLSKVLKTLGFKVTVFPNLKSEEINKFI 87 (272)
T ss_dssp HHHHHHHHHHHHHTTCEEEEEESCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCEEEEecCcCHHHHHHHH
Confidence 6677889999999999998876 344444444
No 466
>3e05_A Precorrin-6Y C5,15-methyltransferase (decarboxyla; porphyrin metabolism, S-adenosyl-methionine; 1.80A {Geobacter metallireducens} SCOP: c.66.1.0
Probab=30.09 E-value=1.7e+02 Score=21.62 Aligned_cols=64 Identities=14% Similarity=0.018 Sum_probs=34.2
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhcCC-EEEE-ECCHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCCCCCHHHHHHHHh
Q 026776 30 VHVLAVDDSFVDRKVIERLLTISSC-KVTA-VDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKKIK 107 (233)
Q Consensus 30 ~~ILIVddd~~~~~~l~~~L~~~g~-~v~~-a~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp~~~g~~ll~~Lr 107 (233)
.+|..+|-++...+..++.+...|. .+.. ..+..+.+. ....+|+|+++..+. +-..+++.+.
T Consensus 65 ~~v~~vD~s~~~~~~a~~~~~~~~~~~v~~~~~d~~~~~~-------------~~~~~D~i~~~~~~~--~~~~~l~~~~ 129 (204)
T 3e05_A 65 GRIFALERNPQYLGFIRDNLKKFVARNVTLVEAFAPEGLD-------------DLPDPDRVFIGGSGG--MLEEIIDAVD 129 (204)
T ss_dssp SEEEEEECCHHHHHHHHHHHHHHTCTTEEEEECCTTTTCT-------------TSCCCSEEEESCCTT--CHHHHHHHHH
T ss_pred CEEEEEeCCHHHHHHHHHHHHHhCCCcEEEEeCChhhhhh-------------cCCCCCEEEECCCCc--CHHHHHHHHH
Confidence 4566677766666666666554442 1211 122111110 114589999987554 4556666665
Q ss_pred c
Q 026776 108 D 108 (233)
Q Consensus 108 ~ 108 (233)
.
T Consensus 130 ~ 130 (204)
T 3e05_A 130 R 130 (204)
T ss_dssp H
T ss_pred H
Confidence 4
No 467
>3s4y_A Thiamin pyrophosphokinase 1; structural genomics, structural genomics consortium, transferase; HET: TPP; 1.80A {Homo sapiens} PDB: 1ig3_A* 2f17_A*
Probab=30.06 E-value=2e+02 Score=22.85 Aligned_cols=101 Identities=12% Similarity=0.109 Sum_probs=54.2
Q ss_pred CcEEEEEeCCHHHHHHHHHHHhhcCCEEEEECCHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCCCCCHHHHHHHHhc
Q 026776 29 EVHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKKIKD 108 (233)
Q Consensus 29 ~~~ILIVddd~~~~~~l~~~L~~~g~~v~~a~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp~~~g~~ll~~Lr~ 108 (233)
..+++||-+-+... .+..+++.. .-+.+++.|...+..+..... ....||+|+=|..--. -+..+.+++
T Consensus 21 ~~~~lIv~ng~~~~-~~~~~~~~~-~~~i~aDgGa~~l~~~~~~~~------~~~~Pd~ivGD~DSi~---~~~~~~~~~ 89 (247)
T 3s4y_A 21 LKYCLVILNQPLDN-YFRHLWNKA-LLRACADGGANRLYDITEGER------ESFLPEFINGDFDSIR---PEVREYYAT 89 (247)
T ss_dssp CCEEEEECSSCCCT-THHHHHHHC-SCEEEETTHHHHHHHHTTTCG------GGCCCSEEEECCSSSC---HHHHHHHHH
T ss_pred CCEEEEEECCcchH-HHHHHHhhC-CEEEEEchHHHHHHHhccccc------cCCCccEEEcCCcCCC---HHHHHHHHh
Confidence 35677776544332 566666653 346778888776655311000 1347999999874433 345556654
Q ss_pred cCCCCCCcEEEEeCCCcHHHHHHHHHc----------CCceEEeCCC
Q 026776 109 SSALREIPVVIMSSENILARIDRCLED----------GAEDFIVKPV 145 (233)
Q Consensus 109 ~~~~~~~piIvlt~~~~~~~~~~al~~----------Ga~dyL~KP~ 145 (233)
. .+.++- ....+..+...|++. |++.++.--.
T Consensus 90 ~----~~~i~~-~peKD~TD~ekAl~~~~~~~~~~~~~~~~I~ilGa 131 (247)
T 3s4y_A 90 K----GCELIS-TPDQDHTDFTKCLKMLQKKIEEKDLKVDVIVTLGG 131 (247)
T ss_dssp T----TCEEEE-CCCTTSCHHHHHHHHHHHHHHHTTCCCSEEEEECC
T ss_pred c----CCEEEE-CCCCCcCHHHHHHHHHHHhhhhccCCCCEEEEEec
Confidence 3 345554 334333333344432 6776654443
No 468
>1nvm_A HOA, 4-hydroxy-2-oxovalerate aldolase; sequestered tunnel, substrate channeling; HET: NAD; 1.70A {Pseudomonas SP} SCOP: a.5.7.1 c.1.10.5
Probab=29.90 E-value=1.3e+02 Score=25.03 Aligned_cols=45 Identities=11% Similarity=0.169 Sum_probs=33.2
Q ss_pred CCCHHHHHHHHhccCCCCCCcEEEEe--CCCcHHHHHHHHHcCCceEEe
Q 026776 96 GMTGYELLKKIKDSSALREIPVVIMS--SENILARIDRCLEDGAEDFIV 142 (233)
Q Consensus 96 ~~~g~~ll~~Lr~~~~~~~~piIvlt--~~~~~~~~~~al~~Ga~dyL~ 142 (233)
..+-+++++.+++..+ .+++.+++ .......+.++.++|++.+..
T Consensus 66 ~~~~~e~l~~i~~~~~--~~~i~~l~~p~~~~~~~i~~a~~aGvd~v~I 112 (345)
T 1nvm_A 66 RHTDLEYIEAVAGEIS--HAQIATLLLPGIGSVHDLKNAYQAGARVVRV 112 (345)
T ss_dssp SSCHHHHHHHHHTTCS--SSEEEEEECBTTBCHHHHHHHHHHTCCEEEE
T ss_pred CCCHHHHHHHHHhhCC--CCEEEEEecCCcccHHHHHHHHhCCcCEEEE
Confidence 3578899998887543 78888874 334577888899999988754
No 469
>1rpx_A Protein (ribulose-phosphate 3-epimerase); chloroplast, calvin cycle, oxidative pentose PH pathway; 2.30A {Solanum tuberosum} SCOP: c.1.2.2
Probab=29.80 E-value=1.9e+02 Score=22.21 Aligned_cols=58 Identities=14% Similarity=0.213 Sum_probs=34.3
Q ss_pred CHHHHHHHHhccCCCCCCcE-EEEeCCCcHHHHHHHHHcCCceEEeCCC--CHHHHHHHHHHHh
Q 026776 98 TGYELLKKIKDSSALREIPV-VIMSSENILARIDRCLEDGAEDFIVKPV--KLSDVKRIKDYLT 158 (233)
Q Consensus 98 ~g~~ll~~Lr~~~~~~~~pi-Ivlt~~~~~~~~~~al~~Ga~dyL~KP~--~~~eL~~~~~~l~ 158 (233)
.|.+.++.|++.. ..++ +.+.-+.....+..+.++|++.+..-.. ..+++.+.++.+.
T Consensus 55 ~~~~~i~~l~~~~---~~~~~v~l~vnd~~~~v~~~~~~Gad~v~vh~~~~~~~~~~~~~~~~~ 115 (230)
T 1rpx_A 55 IGPLVVDSLRPIT---DLPLDVHLMIVEPDQRVPDFIKAGADIVSVHCEQSSTIHLHRTINQIK 115 (230)
T ss_dssp CCHHHHHHHGGGC---CSCEEEEEESSSHHHHHHHHHHTTCSEEEEECSTTTCSCHHHHHHHHH
T ss_pred cCHHHHHHHHhcc---CCcEEEEEEecCHHHHHHHHHHcCCCEEEEEecCccchhHHHHHHHHH
Confidence 4689999998753 2333 3333333345777888999998754443 3334444444443
No 470
>3o74_A Fructose transport system repressor FRUR; dual transcriptional regulator, DNA, transcription; 2.00A {Pseudomonas putida} PDB: 3o75_A*
Probab=29.74 E-value=95 Score=23.90 Aligned_cols=11 Identities=18% Similarity=0.190 Sum_probs=5.5
Q ss_pred HHHHHHHHhcc
Q 026776 99 GYELLKKIKDS 109 (233)
Q Consensus 99 g~~ll~~Lr~~ 109 (233)
|..+.+.|.+.
T Consensus 108 ~~~a~~~L~~~ 118 (272)
T 3o74_A 108 SRQLAASLLSS 118 (272)
T ss_dssp HHHHHHHHHTT
T ss_pred HHHHHHHHHHC
Confidence 44455555543
No 471
>3nrc_A Enoyl-[acyl-carrier-protein] reductase (NADH); rossmann fold, NADH BI oxidoreductase; HET: NAD TCL; 2.10A {Francisella tularensis subsp} PDB: 3uic_A* 2jjy_A*
Probab=29.56 E-value=1.3e+02 Score=23.76 Aligned_cols=86 Identities=8% Similarity=-0.028 Sum_probs=48.0
Q ss_pred CCCCCCcEEEEEeCC--HHHHHHHHHHHhhcCCEEEEECCHH--HHHHHhhhhhhhhccCCCCCcccEEEEcCCCCCCCH
Q 026776 24 PSDTEEVHVLAVDDS--FVDRKVIERLLTISSCKVTAVDSGR--RALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTG 99 (233)
Q Consensus 24 ~~~~~~~~ILIVddd--~~~~~~l~~~L~~~g~~v~~a~~~~--~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp~~~g 99 (233)
+...+..+|||..-. .-+...+.+.|.+.|+.|....... +.++.+... ......+-+|+ .+.+.
T Consensus 21 M~~l~~k~vlVTGasg~~GIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~l~~~---------~~~~~~~~~Dl--~~~~~ 89 (280)
T 3nrc_A 21 MGFLAGKKILITGLLSNKSIAYGIAKAMHREGAELAFTYVGQFKDRVEKLCAE---------FNPAAVLPCDV--ISDQE 89 (280)
T ss_dssp -CTTTTCEEEECCCCSTTCHHHHHHHHHHHTTCEEEEEECTTCHHHHHHHHGG---------GCCSEEEECCT--TCHHH
T ss_pred ccccCCCEEEEECCCCCCCHHHHHHHHHHHcCCEEEEeeCchHHHHHHHHHHh---------cCCceEEEeec--CCHHH
Confidence 334455678888855 5578888888888899887764333 555554211 11234444554 34333
Q ss_pred -HHHHHHHhccCCCCCCcEEEEeC
Q 026776 100 -YELLKKIKDSSALREIPVVIMSS 122 (233)
Q Consensus 100 -~~ll~~Lr~~~~~~~~piIvlt~ 122 (233)
.++++.+.+... .+-+++..+
T Consensus 90 v~~~~~~~~~~~g--~id~li~nA 111 (280)
T 3nrc_A 90 IKDLFVELGKVWD--GLDAIVHSI 111 (280)
T ss_dssp HHHHHHHHHHHCS--SCCEEEECC
T ss_pred HHHHHHHHHHHcC--CCCEEEECC
Confidence 345566655433 555665543
No 472
>3tjr_A Short chain dehydrogenase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, SCD, NAD; HET: UNL; 1.60A {Mycobacterium avium subsp}
Probab=29.37 E-value=2.2e+02 Score=22.81 Aligned_cols=39 Identities=5% Similarity=-0.051 Sum_probs=30.1
Q ss_pred CCCcEEEEEeCCHHHHHHHHHHHhhcCCEEEEECCHHHH
Q 026776 27 TEEVHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRA 65 (233)
Q Consensus 27 ~~~~~ILIVddd~~~~~~l~~~L~~~g~~v~~a~~~~~a 65 (233)
.+.-+|||..-...+...+...|.+.|+.|..+....+.
T Consensus 29 l~gk~vlVTGas~gIG~~la~~l~~~G~~V~~~~r~~~~ 67 (301)
T 3tjr_A 29 FDGRAAVVTGGASGIGLATATEFARRGARLVLSDVDQPA 67 (301)
T ss_dssp STTCEEEEETTTSHHHHHHHHHHHHTTCEEEEEESCHHH
T ss_pred cCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEECCHHH
Confidence 344579999999889999999999999988876543333
No 473
>3rpe_A MDAB, modulator of drug activity B; structural genomics, center for structural genomics of infec diseases, csgid, flavodoxin-like fold; HET: FAD; 1.10A {Yersinia pestis}
Probab=29.32 E-value=1.2e+02 Score=23.74 Aligned_cols=39 Identities=15% Similarity=0.124 Sum_probs=19.8
Q ss_pred CCCCCCCCCcEEEEEeCCHH--------HHHH---HHHHHhhcCCEEEEE
Q 026776 21 DLSPSDTEEVHVLAVDDSFV--------DRKV---IERLLTISSCKVTAV 59 (233)
Q Consensus 21 ~~~~~~~~~~~ILIVddd~~--------~~~~---l~~~L~~~g~~v~~a 59 (233)
++-.+....++||||..++. +..+ +.+.++..|++|...
T Consensus 17 ~~~~~~~~M~kiLiI~gsp~~~~s~~s~n~~L~~~~~~~l~~~g~ev~~~ 66 (218)
T 3rpe_A 17 NLYFQSNAMSNVLIINAMKEFAHSKGALNLTLTNVAADFLRESGHQVKIT 66 (218)
T ss_dssp --C----CCCCEEEEECCCCBTTBCSHHHHHHHHHHHHHHHHTTCCEEEE
T ss_pred ccccccccCcceEEEEeCCCcccCCChHHHHHHHHHHHHHhhCCCEEEEE
Confidence 34445555678999987762 3333 333344567777654
No 474
>2nzl_A Hydroxyacid oxidase 1; HAOX1, glycolate oxidase, GOX, GOX1, structural genomics, structural genom consortium, SGC, oxidoreductase; HET: FMN; 1.35A {Homo sapiens} PDB: 2rdu_A* 2rdt_A* 2rdw_A* 2w0u_A*
Probab=29.30 E-value=2.3e+02 Score=24.16 Aligned_cols=91 Identities=15% Similarity=0.169 Sum_probs=55.6
Q ss_pred HHHHHHHhhcCC--EEEEECCHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCC-----CCCHHHHHHHHhccCCCCCC
Q 026776 43 KVIERLLTISSC--KVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMP-----GMTGYELLKKIKDSSALREI 115 (233)
Q Consensus 43 ~~l~~~L~~~g~--~v~~a~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp-----~~~g~~ll~~Lr~~~~~~~~ 115 (233)
+.++.+-+..+. .+..+.+.+++..... ..+|.|++.-.-. +...++++.++++.-. .++
T Consensus 242 ~~i~~lr~~~~~PvivKgv~~~e~A~~a~~------------aGad~I~vs~~ggr~~~~g~~~~~~l~~v~~av~-~~i 308 (392)
T 2nzl_A 242 EDIKWLRRLTSLPIVAKGILRGDDAREAVK------------HGLNGILVSNHGARQLDGVPATIDVLPEIVEAVE-GKV 308 (392)
T ss_dssp HHHHHHC--CCSCEEEEEECCHHHHHHHHH------------TTCCEEEECCGGGTSSTTCCCHHHHHHHHHHHHT-TSS
T ss_pred HHHHHHHHhhCCCEEEEecCCHHHHHHHHH------------cCCCEEEeCCCCCCcCCCCcChHHHHHHHHHHcC-CCC
Confidence 334444333333 3334567777766552 3478888743211 2345677777765321 268
Q ss_pred cEEEEeCCCcHHHHHHHHHcCCceEEe-CCCC
Q 026776 116 PVVIMSSENILARIDRCLEDGAEDFIV-KPVK 146 (233)
Q Consensus 116 piIvlt~~~~~~~~~~al~~Ga~dyL~-KP~~ 146 (233)
|||+-.+-.+..++.+++..||+.+.. .|+-
T Consensus 309 pVia~GGI~~g~Dv~kalalGAd~V~iGr~~l 340 (392)
T 2nzl_A 309 EVFLDGGVRKGTDVLKALALGAKAVFVGRPIV 340 (392)
T ss_dssp EEEECSSCCSHHHHHHHHHTTCSEEEECHHHH
T ss_pred EEEEECCCCCHHHHHHHHHhCCCeeEECHHHH
Confidence 888877777889999999999999854 4543
No 475
>3i45_A Twin-arginine translocation pathway signal protei; structural genomics; 1.36A {Rhodospirillum rubrum}
Probab=29.22 E-value=2.3e+02 Score=23.09 Aligned_cols=79 Identities=11% Similarity=0.032 Sum_probs=47.0
Q ss_pred cEEEEEe-CCHH---HHHHHHHHHhhc--CCEEEEE-------CCHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCCC
Q 026776 30 VHVLAVD-DSFV---DRKVIERLLTIS--SCKVTAV-------DSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPG 96 (233)
Q Consensus 30 ~~ILIVd-dd~~---~~~~l~~~L~~~--g~~v~~a-------~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp~ 96 (233)
-+|.+|- |+.. ....+++.++.. |..+... .+....+..+ ....+|+|++... +
T Consensus 143 ~~vaii~~~~~~g~~~~~~~~~~l~~~~~g~~vv~~~~~~~~~~d~~~~~~~i-----------~~~~~d~v~~~~~--~ 209 (387)
T 3i45_A 143 TRWATIAPNYEYGQSAVARFKELLLAARPEVTFVAEQWPALYKLDAGPTVQAL-----------QQAEPEGLFNVLF--G 209 (387)
T ss_dssp CEEEEECCSSHHHHHHHHHHHHHHHHHCTTCEEEEEECCCTTCCCHHHHHHHH-----------HHTCCSEEEECCC--T
T ss_pred CeEEEEeCCchHhHHHHHHHHHHHHHhCCCcEEEeeecCCCCCcCHHHHHHHH-----------HhCCCCEEEEcCc--c
Confidence 4566664 3432 334456666666 6665431 2455566655 3346899998643 4
Q ss_pred CCHHHHHHHHhccCCCCCCcEEEEe
Q 026776 97 MTGYELLKKIKDSSALREIPVVIMS 121 (233)
Q Consensus 97 ~~g~~ll~~Lr~~~~~~~~piIvlt 121 (233)
.+...+++.+++......++++...
T Consensus 210 ~~~~~~~~~~~~~g~~~~~~i~~~~ 234 (387)
T 3i45_A 210 ADLPKFVREGRVRGLFAGRQVVSML 234 (387)
T ss_dssp THHHHHHHHHHHHTSSTTCEEEEEE
T ss_pred HHHHHHHHHHHHcCCCCCCeEEeec
Confidence 4677888888876643356666554
No 476
>1l6s_A Porphobilinogen synthase; dehydratase, lyase; HET: CME DSB; 1.70A {Escherichia coli} SCOP: c.1.10.3 PDB: 1i8j_A* 1l6y_A* 1b4e_A
Probab=29.11 E-value=86 Score=26.20 Aligned_cols=65 Identities=22% Similarity=0.314 Sum_probs=45.7
Q ss_pred CHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCCCCCHHHHHHHHhccCCCCCCcEEEEeCCCcHHHHHHHHHcCCce
Q 026776 61 SGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAED 139 (233)
Q Consensus 61 ~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp~~~g~~ll~~Lr~~~~~~~~piIvlt~~~~~~~~~~al~~Ga~d 139 (233)
|..||+..+..+-+ +..|+|++- |++.=+++++.+++.. .+|+.++--++....+..|.+.|..|
T Consensus 224 N~~EAlre~~~Di~--------EGAD~vMVK---Pal~YLDIi~~vk~~~---~~P~aaYqVSGEYAMikaAa~~GwiD 288 (323)
T 1l6s_A 224 NRREAIRESLLDEA--------QGADCLMVK---PAGAYLDIVRELRERT---ELPIGAYQVSGEYAMIKFAALAGAID 288 (323)
T ss_dssp CHHHHHHHHHHHHH--------TTCSBEEEE---SCTTCHHHHHHHHTTC---SSCEEEEECHHHHHHHHHHHHTTSSC
T ss_pred CHHHHHHHHHhhHH--------hCCceEEEe---cCcchhHHHHHHHHhc---CCCeEEEEcCcHHHHHHHHHHcCCcc
Confidence 56677766654432 346899887 5666688999999764 88999887766666666666666543
No 477
>4a29_A Engineered retro-aldol enzyme RA95.0; de novo protein, engineered enzyme, retro-aldolase, directed evolution; HET: 3NK MLT; 1.10A {Synthetic construct} PDB: 4a2s_A* 4a2r_A* 3tc7_A 3tc6_A 3nl8_A* 3nxf_A* 3o6y_X 3ud6_A* 1igs_A 1juk_A 1jul_A* 3hoj_A 1a53_A* 1lbf_A* 1lbl_A* 3nyz_A 3nz1_A* 3uy7_A 3uxd_A* 3uxa_A* ...
Probab=28.82 E-value=2.3e+02 Score=22.87 Aligned_cols=98 Identities=10% Similarity=0.026 Sum_probs=58.8
Q ss_pred EEEEeC--CHHHHHHHHHHHhhcCCEE-EEECCHHHHHHHhhhhhhhhccCCCCCcccEEEEcC-CCC--CCCHHHHHHH
Q 026776 32 VLAVDD--SFVDRKVIERLLTISSCKV-TAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDY-CMP--GMTGYELLKK 105 (233)
Q Consensus 32 ILIVdd--d~~~~~~l~~~L~~~g~~v-~~a~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~-~mp--~~~g~~ll~~ 105 (233)
||+|-. +......+..+-.+.|.++ +.+.+.+|+-..+. ...++|=++- ++- ..| ++....
T Consensus 130 ILLI~a~L~~~~l~~l~~~A~~lGl~~LvEVh~~~El~rAl~------------~~a~iIGINNRnL~tf~vd-l~~t~~ 196 (258)
T 4a29_A 130 VLLIVKILTERELESLLEYARSYGMEPLILINDENDLDIALR------------IGARFIGIMSRDFETGEIN-KENQRK 196 (258)
T ss_dssp EEEEGGGSCHHHHHHHHHHHHHTTCCCEEEESSHHHHHHHHH------------TTCSEEEECSBCTTTCCBC-HHHHHH
T ss_pred eehHHhhcCHHHHHHHHHHHHHHhHHHHHhcchHHHHHHHhc------------CCCcEEEEeCCCccccccC-HHHHHH
Confidence 555532 2233344555556778644 45788888766653 2356664432 222 223 444555
Q ss_pred HhccCCCCCCcEEEEeCCCcHHHHHHHHHcCCceEEeC
Q 026776 106 IKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVK 143 (233)
Q Consensus 106 Lr~~~~~~~~piIvlt~~~~~~~~~~al~~Ga~dyL~K 143 (233)
|...-+ .+..+|.-++-.+.+++....+.|+++||.-
T Consensus 197 L~~~ip-~~~~~VsESGI~t~~dv~~l~~~G~~a~LVG 233 (258)
T 4a29_A 197 LISMIP-SNVVKVAKLGISERNEIEELRKLGVNAFLIS 233 (258)
T ss_dssp HHTTSC-TTSEEEEEESSCCHHHHHHHHHTTCCEEEEC
T ss_pred HHhhCC-CCCEEEEcCCCCCHHHHHHHHHCCCCEEEEC
Confidence 554333 2556666677778899999999999999985
No 478
>4htf_A S-adenosylmethionine-dependent methyltransferase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE SAM; 1.60A {Escherichia coli}
Probab=28.74 E-value=1.3e+02 Score=23.60 Aligned_cols=68 Identities=12% Similarity=0.026 Sum_probs=34.9
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhcCC--EEE-EECCHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCCCC-CHHHHHHH
Q 026776 30 VHVLAVDDSFVDRKVIERLLTISSC--KVT-AVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGM-TGYELLKK 105 (233)
Q Consensus 30 ~~ILIVddd~~~~~~l~~~L~~~g~--~v~-~a~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp~~-~g~~ll~~ 105 (233)
.+|..||-++......++.+...|. .+. ...+..+... +....+|+|++...+... +-..+++.
T Consensus 91 ~~v~gvD~s~~~~~~a~~~~~~~~~~~~v~~~~~d~~~~~~------------~~~~~fD~v~~~~~l~~~~~~~~~l~~ 158 (285)
T 4htf_A 91 HQVILCDLSAQMIDRAKQAAEAKGVSDNMQFIHCAAQDVAS------------HLETPVDLILFHAVLEWVADPRSVLQT 158 (285)
T ss_dssp CEEEEEESCHHHHHHHHHHHHC-CCGGGEEEEESCGGGTGG------------GCSSCEEEEEEESCGGGCSCHHHHHHH
T ss_pred CEEEEEECCHHHHHHHHHHHHhcCCCcceEEEEcCHHHhhh------------hcCCCceEEEECchhhcccCHHHHHHH
Confidence 4566666666666666655554432 121 1222211110 134579999997655422 44567777
Q ss_pred Hhcc
Q 026776 106 IKDS 109 (233)
Q Consensus 106 Lr~~ 109 (233)
++..
T Consensus 159 ~~~~ 162 (285)
T 4htf_A 159 LWSV 162 (285)
T ss_dssp HHHT
T ss_pred HHHH
Confidence 7653
No 479
>4hjf_A Ggdef family protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, EAL domain, signaling protein; HET: MSE C2E; 1.75A {Caulobacter crescentus}
Probab=28.43 E-value=62 Score=27.03 Aligned_cols=97 Identities=10% Similarity=0.104 Sum_probs=57.3
Q ss_pred HHHhhcCCEEEE--ECCHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCC----CC-CCHHHHHHHHhccCCCCCCcEEE
Q 026776 47 RLLTISSCKVTA--VDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCM----PG-MTGYELLKKIKDSSALREIPVVI 119 (233)
Q Consensus 47 ~~L~~~g~~v~~--a~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~m----p~-~~g~~ll~~Lr~~~~~~~~piIv 119 (233)
..|+..|+.+.. +.+|...+..+ ...++|.|=+|-.+ .. .....+++.|-.....-++.+|
T Consensus 219 ~~Lr~~G~~ialDDFGtG~ssl~~L-----------~~lp~d~iKID~sfv~~~~~~~~~~~iv~~ii~la~~lg~~vv- 286 (340)
T 4hjf_A 219 KTLRDAGAGLALDDFGTGFSSLSYL-----------TRLPFDTLKIDRYFVRTMGNNAGSAKIVRSVVKLGQDLDLEVV- 286 (340)
T ss_dssp HHHHHHTCEEEEECTTSSSCGGGTG-----------GGSCCSEEEECHHHHHHTTTCHHHHHHHHHHHHHHHHHTCEEE-
T ss_pred HHHHHcCCCccccCCCCCcchHHHH-----------HhCCCChhcccHHhhhcccCCHhHHHHHHHHHHHHHHcCCEEE-
Confidence 345667876654 44554455554 55689999988533 21 2233444444222111134444
Q ss_pred EeCCCcHHHHHHHHHcCCce----EEeCCCCHHHHHHHHH
Q 026776 120 MSSENILARIDRCLEDGAED----FIVKPVKLSDVKRIKD 155 (233)
Q Consensus 120 lt~~~~~~~~~~al~~Ga~d----yL~KP~~~~eL~~~~~ 155 (233)
.-+-.+.+....+.+.|++. |+.||...+++...++
T Consensus 287 AEGVEt~~q~~~L~~lG~d~~QGy~~~~P~~~~~~~~~l~ 326 (340)
T 4hjf_A 287 AEGVENAEMAHALQSLGCDYGQGFGYAPALSPQEAEVYLN 326 (340)
T ss_dssp EECCCSHHHHHHHHHTTCCEEESTTTCCSBCHHHHHHHHH
T ss_pred EEeCCcHHHHHHHHHcCCCEeecCccccCCCHHHHHHHHH
Confidence 33445667777778899874 3789999999876654
No 480
>1ydw_A AX110P-like protein; structural genomics, protein structure initiative, center for eukaryotic structural genomics, CESG, AT4G09670; 2.49A {Arabidopsis thaliana} SCOP: c.2.1.3 d.81.1.5 PDB: 2q4e_A
Probab=28.39 E-value=2.5e+02 Score=23.11 Aligned_cols=45 Identities=18% Similarity=0.263 Sum_probs=30.3
Q ss_pred CcEEEEeCCC--cHHHHHHHHHcCCceEEeCCCC--HHHHHHHHHHHhh
Q 026776 115 IPVVIMSSEN--ILARIDRCLEDGAEDFIVKPVK--LSDVKRIKDYLTR 159 (233)
Q Consensus 115 ~piIvlt~~~--~~~~~~~al~~Ga~dyL~KP~~--~~eL~~~~~~l~~ 159 (233)
+-+|+++... ..+.+..++++|..=|+.||+. .++..++++...+
T Consensus 72 ~D~V~i~tp~~~h~~~~~~al~aGk~V~~EKP~a~~~~e~~~l~~~a~~ 120 (362)
T 1ydw_A 72 IDALYVPLPTSLHVEWAIKAAEKGKHILLEKPVAMNVTEFDKIVDACEA 120 (362)
T ss_dssp CCEEEECCCGGGHHHHHHHHHTTTCEEEECSSCSSSHHHHHHHHHHHHT
T ss_pred CCEEEEcCChHHHHHHHHHHHHCCCeEEEecCCcCCHHHHHHHHHHHHH
Confidence 4445554433 4567788999999989999964 5666666665544
No 481
>3h5o_A Transcriptional regulator GNTR; transcription regulator, GNTR,chromobacterium violaceum, PSI, SGX, DNA-binding; 2.30A {Chromobacterium violaceum}
Probab=28.37 E-value=2.1e+02 Score=22.94 Aligned_cols=21 Identities=14% Similarity=0.097 Sum_probs=14.5
Q ss_pred HHHHHHHHHHhhcCCEEEEEC
Q 026776 40 VDRKVIERLLTISSCKVTAVD 60 (233)
Q Consensus 40 ~~~~~l~~~L~~~g~~v~~a~ 60 (233)
.+...+++.+.+.||.+..+.
T Consensus 79 ~~~~gi~~~a~~~g~~~~~~~ 99 (339)
T 3h5o_A 79 ETLTGIETVLDAAGYQMLIGN 99 (339)
T ss_dssp HHHHHHHHHHHHTTCEEEEEE
T ss_pred HHHHHHHHHHHHCCCEEEEEe
Confidence 345556667778899887754
No 482
>1ep3_A Dihydroorotate dehydrogenase B (PYRD subunit); heterotetramer, alpha-beta barrel, beta sandwich, FAD domain alpha/beta NADP domain; HET: FMN FAD; 2.10A {Lactococcus lactis} SCOP: c.1.4.1 PDB: 1ep2_A* 1ep1_A*
Probab=28.30 E-value=83 Score=25.46 Aligned_cols=39 Identities=15% Similarity=0.276 Sum_probs=30.9
Q ss_pred HHHHHHHhccCCCCCCcEEEEeCCCcHHHHHHHHHcCCceEE
Q 026776 100 YELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFI 141 (233)
Q Consensus 100 ~~ll~~Lr~~~~~~~~piIvlt~~~~~~~~~~al~~Ga~dyL 141 (233)
+++++++++.. ++|||...+-.+.+.+.++++.||+.+.
T Consensus 230 ~~~i~~i~~~~---~ipvia~GGI~~~~d~~~~l~~GAd~V~ 268 (311)
T 1ep3_A 230 LKLIHQVAQDV---DIPIIGMGGVANAQDVLEMYMAGASAVA 268 (311)
T ss_dssp HHHHHHHHTTC---SSCEEECSSCCSHHHHHHHHHHTCSEEE
T ss_pred HHHHHHHHHhc---CCCEEEECCcCCHHHHHHHHHcCCCEEE
Confidence 47788887642 7898877776788899999999998874
No 483
>2v25_A Major cell-binding factor; antigen, adhesin, aspartate, glutamate, transport, ABC transport, virulence factor, receptor; 1.49A {Campylobacter jejuni}
Probab=28.26 E-value=1.4e+02 Score=22.42 Aligned_cols=55 Identities=16% Similarity=0.134 Sum_probs=39.0
Q ss_pred CCCCcEEEEEeCCHHHHHHHHHHHhhcCC--EEEEECCHHHHHHHhhhhhhhhccCCCCCcccEEEEcC
Q 026776 26 DTEEVHVLAVDDSFVDRKVIERLLTISSC--KVTAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDY 92 (233)
Q Consensus 26 ~~~~~~ILIVddd~~~~~~l~~~L~~~g~--~v~~a~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~ 92 (233)
+.+..+|.+.... .....+..++...|+ .+..+.+..+++..+ ...+.|+++.+.
T Consensus 145 dL~g~~i~~~~g~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l-----------~~g~vDa~~~~~ 201 (259)
T 2v25_A 145 DMKGANIGVAQAA-TTKKAIGEAAKKIGIDVKFSEFPDYPSIKAAL-----------DAKRVDAFSVDK 201 (259)
T ss_dssp GCTTCEEEEETTC-SHHHHHHHHHHHTTCCCEEEEESSHHHHHHHH-----------HTTSSSEEEEEH
T ss_pred HhCCCEEEEecCC-chHHHHHHHHHhcCCceeEEEeCCHHHHHHHH-----------HcCCCcEEEecH
Confidence 3445677776444 345667777776664 677788999999988 456789999863
No 484
>3sz8_A 2-dehydro-3-deoxyphosphooctonate aldolase 2; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 2.05A {Burkholderia pseudomallei} PDB: 3tmq_A* 3und_A*
Probab=28.21 E-value=96 Score=25.50 Aligned_cols=71 Identities=11% Similarity=0.222 Sum_probs=42.5
Q ss_pred cccEEEEcCCC--------CCCCHHHHHHHHhccCCCCCCcEEEEeCCC------------c-----HHHHHHHHHcCCc
Q 026776 84 KVDLIITDYCM--------PGMTGYELLKKIKDSSALREIPVVIMSSEN------------I-----LARIDRCLEDGAE 138 (233)
Q Consensus 84 ~~DlvllD~~m--------p~~~g~~ll~~Lr~~~~~~~~piIvlt~~~------------~-----~~~~~~al~~Ga~ 138 (233)
..+++|+.... -++..+..+ |+..+ .+||++-+++. . ......|..+||+
T Consensus 162 n~~i~L~erg~~y~~~~~~vdl~~i~~l---k~~~~--~~pV~~D~sHs~q~p~~~~~~s~G~r~~v~~~a~AAvA~GA~ 236 (285)
T 3sz8_A 162 NDRVMLCERGSSFGYDNLVVDMLGFRQM---AETTG--GCPVIFDVTHSLQCRDPLGDASGGRRRQVLDLARAGIAVGIA 236 (285)
T ss_dssp CCCEEEEECCEECSSSCEECCTTHHHHH---HHHTT--SCCEEEETTTTCC---------------HHHHHHHHHHHCCS
T ss_pred CCcEEEEeCCCCCCCCcCccCHHHHHHH---HHhCC--CCCEEEeCCCccccCCCcCCCCCCchhhHHHHHHHHHHhCCC
Confidence 35788886543 134555554 44322 47888766665 2 4456788899999
Q ss_pred e-EEeCCCC-------------HHHHHHHHHHHhh
Q 026776 139 D-FIVKPVK-------------LSDVKRIKDYLTR 159 (233)
Q Consensus 139 d-yL~KP~~-------------~~eL~~~~~~l~~ 159 (233)
+ ++.|-++ +++|.++++.+++
T Consensus 237 gl~IE~H~~pd~al~D~~~sl~p~el~~lv~~i~~ 271 (285)
T 3sz8_A 237 GLFLEAHPDPDRARCDGPSALPLHQLEGLLSQMKA 271 (285)
T ss_dssp EEEEEEESCGGGCSCSSCCCEEGGGHHHHHHHHHH
T ss_pred EEEEEeccChhccCCchhhccCHHHHHHHHHHHHH
Confidence 7 4555444 4556666665543
No 485
>1wbh_A KHG/KDPG aldolase; lyase; 1.55A {Escherichia coli} SCOP: c.1.10.1 PDB: 2c0a_A 1wau_A 1eua_A 1eun_A 1fq0_A* 1fwr_A*
Probab=28.16 E-value=2.1e+02 Score=22.10 Aligned_cols=57 Identities=14% Similarity=0.095 Sum_probs=32.7
Q ss_pred ccEEEEcCCCCCCCHHHHHHHHhccCCCCCCcEEEEeCCCcHHHHHHHHHcCCceEEeCCCC
Q 026776 85 VDLIITDYCMPGMTGYELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVKPVK 146 (233)
Q Consensus 85 ~DlvllD~~mp~~~g~~ll~~Lr~~~~~~~~piIvlt~~~~~~~~~~al~~Ga~dyL~KP~~ 146 (233)
.++|=+. +...++.+.++.+++..+ .+. +....--+.+....|+++||+.++.-..+
T Consensus 42 v~~iel~--~k~~~~~~~i~~l~~~~~--~~~-vgagtvi~~d~~~~A~~aGAd~v~~p~~d 98 (214)
T 1wbh_A 42 VRVLNVT--LRTECAVDAIRAIAKEVP--EAI-VGAGTVLNPQQLAEVTEAGAQFAISPGLT 98 (214)
T ss_dssp CCEEEEE--SCSTTHHHHHHHHHHHCT--TSE-EEEESCCSHHHHHHHHHHTCSCEEESSCC
T ss_pred CCEEEEe--CCChhHHHHHHHHHHHCc--CCE-EeeCEEEEHHHHHHHHHcCCCEEEcCCCC
Confidence 3444443 345567788887766543 332 22222344577788888998866654333
No 486
>3ipc_A ABC transporter, substrate binding protein (amino; venus flytrap domain, transport protein; 1.30A {Agrobacterium tumefaciens} PDB: 3ip5_A 3ip6_A 3ip7_A 3ip9_A 3ipa_A
Probab=28.04 E-value=1e+02 Score=24.97 Aligned_cols=70 Identities=7% Similarity=-0.035 Sum_probs=38.7
Q ss_pred HHHHHHHhhcCCEEE---EE----CCHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCCCCCHHHHHHHHhccCCCCCC
Q 026776 43 KVIERLLTISSCKVT---AV----DSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKKIKDSSALREI 115 (233)
Q Consensus 43 ~~l~~~L~~~g~~v~---~a----~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp~~~g~~ll~~Lr~~~~~~~~ 115 (233)
+.+++.++..|..+. .+ .+....+..+ ....+|+|++.. .+.+...+++.+++... .+
T Consensus 156 ~~~~~~l~~~g~~v~~~~~~~~~~~d~~~~~~~l-----------~~~~~d~v~~~~--~~~~a~~~~~~~~~~g~--~~ 220 (356)
T 3ipc_A 156 DETKKAANAAGVTEVMYEGVNVGDKDFSALISKM-----------KEAGVSIIYWGG--LHTEAGLIIRQAADQGL--KA 220 (356)
T ss_dssp HHHHHHHHHTTCCCSEEEECCTTCCCCHHHHHHH-----------HHTTCCEEEEES--CHHHHHHHHHHHHHHTC--CC
T ss_pred HHHHHHHHHcCCEEEEEEeeCCCCCCHHHHHHHH-----------HhcCCCEEEEcc--CchHHHHHHHHHHHCCC--CC
Confidence 344555666665432 11 2444555555 234689988643 23445678888887765 66
Q ss_pred cEEEEeCCCcHH
Q 026776 116 PVVIMSSENILA 127 (233)
Q Consensus 116 piIvlt~~~~~~ 127 (233)
|++......+..
T Consensus 221 ~~~~~~~~~~~~ 232 (356)
T 3ipc_A 221 KLVSGDGIVSNE 232 (356)
T ss_dssp EEEECGGGCSHH
T ss_pred cEEEeccccCHH
Confidence 765543333433
No 487
>4g65_A TRK system potassium uptake protein TRKA; structural genomics, center for structural genomics of infec diseases, csgid, niaid; HET: MSE; 2.09A {Vibrio vulnificus}
Probab=28.03 E-value=2e+02 Score=25.04 Aligned_cols=37 Identities=14% Similarity=0.163 Sum_probs=15.9
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhcCCEEEEECCHHHHHH
Q 026776 30 VHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQ 67 (233)
Q Consensus 30 ~~ILIVddd~~~~~~l~~~L~~~g~~v~~a~~~~~al~ 67 (233)
|||+|+.--. +...+.+.|...|++|+..+.-.+.++
T Consensus 4 M~iiI~G~G~-vG~~la~~L~~~~~~v~vId~d~~~~~ 40 (461)
T 4g65_A 4 MKIIILGAGQ-VGGTLAENLVGENNDITIVDKDGDRLR 40 (461)
T ss_dssp EEEEEECCSH-HHHHHHHHTCSTTEEEEEEESCHHHHH
T ss_pred CEEEEECCCH-HHHHHHHHHHHCCCCEEEEECCHHHHH
Confidence 4444444433 233334444444454444444344433
No 488
>1o4u_A Type II quinolic acid phosphoribosyltransferase; structural genomics, joint center for structural genomics, J protein structure initiative; 2.50A {Thermotoga maritima} SCOP: c.1.17.1 d.41.2.1
Probab=27.94 E-value=57 Score=26.86 Aligned_cols=69 Identities=14% Similarity=0.146 Sum_probs=41.6
Q ss_pred EEECCHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCCCCCHHHHHHHHhccCCCCCCcEEEEeCCCcHHHHHHHHHcC
Q 026776 57 TAVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTGYELLKKIKDSSALREIPVVIMSSENILARIDRCLEDG 136 (233)
Q Consensus 57 ~~a~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp~~~g~~ll~~Lr~~~~~~~~piIvlt~~~~~~~~~~al~~G 136 (233)
..+.+.+++.+.+. ...|+|++|- |...+-.++.+.++...+ .+++ ..++.-+.+.+.+..+.|
T Consensus 198 VEV~tleea~eA~~------------aGaD~I~LDn-~~~e~l~~av~~l~~~~~--~v~i-eASGGIt~eni~~~a~tG 261 (285)
T 1o4u_A 198 VEVENLEDALRAVE------------AGADIVMLDN-LSPEEVKDISRRIKDINP--NVIV-EVSGGITEENVSLYDFET 261 (285)
T ss_dssp EEESSHHHHHHHHH------------TTCSEEEEES-CCHHHHHHHHHHHHHHCT--TSEE-EEEECCCTTTGGGGCCTT
T ss_pred EEeCCHHHHHHHHH------------cCCCEEEECC-CCHHHHHHHHHHhhccCC--CceE-EEECCCCHHHHHHHHHcC
Confidence 35778888888773 2479999996 322222334455544222 4444 455555566666777888
Q ss_pred CceEE
Q 026776 137 AEDFI 141 (233)
Q Consensus 137 a~dyL 141 (233)
+|.+-
T Consensus 262 VD~Is 266 (285)
T 1o4u_A 262 VDVIS 266 (285)
T ss_dssp CCEEE
T ss_pred CCEEE
Confidence 87664
No 489
>2glx_A 1,5-anhydro-D-fructose reductase; NADP(H) dependent reductase, rossmann-fold, sugar metabolism, 1,5-anhydro-D-mannitol, oxidoreductase; HET: NDP; 2.20A {Ensifer adhaerens}
Probab=27.76 E-value=2.4e+02 Score=22.73 Aligned_cols=44 Identities=18% Similarity=0.239 Sum_probs=26.1
Q ss_pred CcEEEEeCCC--cHHHHHHHHHcCCceEEeCCC--CHHHHHHHHHHHh
Q 026776 115 IPVVIMSSEN--ILARIDRCLEDGAEDFIVKPV--KLSDVKRIKDYLT 158 (233)
Q Consensus 115 ~piIvlt~~~--~~~~~~~al~~Ga~dyL~KP~--~~~eL~~~~~~l~ 158 (233)
+-+|+++... ..+.+..+++.|..=|+.||+ +.++..++.+...
T Consensus 63 ~D~V~i~tp~~~h~~~~~~al~~Gk~v~~ekP~~~~~~~~~~l~~~a~ 110 (332)
T 2glx_A 63 VDAVYVSTTNELHREQTLAAIRAGKHVLCEKPLAMTLEDAREMVVAAR 110 (332)
T ss_dssp CCEEEECSCGGGHHHHHHHHHHTTCEEEECSSSCSSHHHHHHHHHHHH
T ss_pred CCEEEEeCChhHhHHHHHHHHHCCCeEEEeCCCcCCHHHHHHHHHHHH
Confidence 3444444332 345666778888777788886 4555555555443
No 490
>2e6f_A Dihydroorotate dehydrogenase; chagas disease, pyrimidine biosynthesis, fumarate reductase, energy metabolism, redox homeostasis, flavoprotein; HET: FMN OXC; 1.26A {Trypanosoma cruzi} PDB: 2e6a_A* 2e6d_A* 2e68_A* 2djl_A* 2djx_A* 3c3n_A* 2b4g_A* 3c61_A* 3mhu_A* 3mjy_A*
Probab=27.75 E-value=82 Score=25.71 Aligned_cols=40 Identities=8% Similarity=-0.168 Sum_probs=32.8
Q ss_pred HHHHHHHhccCCCCCCcEEEEeCCCcHHHHHHHHHcCCceEE
Q 026776 100 YELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFI 141 (233)
Q Consensus 100 ~~ll~~Lr~~~~~~~~piIvlt~~~~~~~~~~al~~Ga~dyL 141 (233)
+++++++++.- .++|||...+-.+.+.+.+++.+||+.+.
T Consensus 232 ~~~i~~v~~~~--~~ipvi~~GGI~~~~da~~~l~~GAd~V~ 271 (314)
T 2e6f_A 232 LANVNAFYRRC--PDKLVFGCGGVYSGEDAFLHILAGASMVQ 271 (314)
T ss_dssp HHHHHHHHHHC--TTSEEEEESSCCSHHHHHHHHHHTCSSEE
T ss_pred HHHHHHHHHhc--CCCCEEEECCCCCHHHHHHHHHcCCCEEE
Confidence 67888888754 37899988887888999999999998773
No 491
>2z2v_A Hypothetical protein PH1688; L-lysine dehydrogenase, oxidoreductase; HET: NAD; 2.44A {Pyrococcus horikoshii} PDB: 3a63_A* 3abi_A*
Probab=27.74 E-value=2.7e+02 Score=23.31 Aligned_cols=50 Identities=18% Similarity=0.204 Sum_probs=23.8
Q ss_pred eeeeeccccccCCCCCCCCCcEEEEEeCCHHHHHHHHHHHhhcCCEEEEECCHHHHHHHh
Q 026776 10 LRLISDEIDGFDLSPSDTEEVHVLAVDDSFVDRKVIERLLTISSCKVTAVDSGRRALQFL 69 (233)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~ILIVddd~~~~~~l~~~L~~~g~~v~~a~~~~~al~~l 69 (233)
+|++++-++. +..+|+|+.--.. ...+...|.+. ++|..++--.+..+.+
T Consensus 5 ~~~~~~~~~~--------~~~~v~IiGaG~i-G~~ia~~L~~~-~~V~V~~R~~~~a~~l 54 (365)
T 2z2v_A 5 VHHHHHHIEG--------RHMKVLILGAGNI-GRAIAWDLKDE-FDVYIGDVNNENLEKV 54 (365)
T ss_dssp -------------------CCEEEEECCSHH-HHHHHHHHTTT-SEEEEEESCHHHHHHH
T ss_pred cccccccccC--------CCCeEEEEcCCHH-HHHHHHHHHcC-CeEEEEECCHHHHHHH
Confidence 4556666666 5788999987554 44455555445 7777766444444443
No 492
>2igt_A SAM dependent methyltransferase; alpha-beta sandwich, beta-barrel, structural genomics, PSI-2 structure initiative; HET: MSE SAM GOL; 1.89A {Agrobacterium tumefaciens str} SCOP: c.66.1.51
Probab=27.69 E-value=1.5e+02 Score=24.48 Aligned_cols=54 Identities=19% Similarity=0.145 Sum_probs=35.1
Q ss_pred cEEEEEeCCHHHHHHHHHHHhhcCCE---EE-EECCHHHHHHHhhhhhhhhccCCCCCcccEEEEcC
Q 026776 30 VHVLAVDDSFVDRKVIERLLTISSCK---VT-AVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDY 92 (233)
Q Consensus 30 ~~ILIVddd~~~~~~l~~~L~~~g~~---v~-~a~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~ 92 (233)
.+|..||-++...+..++.++..+.. +. ...+..+.+..+.. ....||+|++|.
T Consensus 176 a~V~~VD~s~~al~~a~~n~~~~gl~~~~v~~i~~D~~~~l~~~~~---------~~~~fD~Ii~dP 233 (332)
T 2igt_A 176 AEVTHVDASKKAIGWAKENQVLAGLEQAPIRWICEDAMKFIQREER---------RGSTYDIILTDP 233 (332)
T ss_dssp CEEEEECSCHHHHHHHHHHHHHHTCTTSCEEEECSCHHHHHHHHHH---------HTCCBSEEEECC
T ss_pred CEEEEEECCHHHHHHHHHHHHHcCCCccceEEEECcHHHHHHHHHh---------cCCCceEEEECC
Confidence 37899999998888888887766531 33 34565555433210 134699999985
No 493
>1qo2_A Molecule: N-((5-phosphoribosyl)-formimino)-5-aminoimidazol- 4-carboxamid ribonucleotid...; isomerase, histidine biosynthesis; 1.85A {Thermotoga maritima} SCOP: c.1.2.1 PDB: 2cff_A 2w79_A
Probab=27.65 E-value=82 Score=24.53 Aligned_cols=39 Identities=18% Similarity=0.124 Sum_probs=0.0
Q ss_pred HHHHHHHhccCCCCCCcEEEEeCCCcHHHHHHHHHcCCceEEe
Q 026776 100 YELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIV 142 (233)
Q Consensus 100 ~~ll~~Lr~~~~~~~~piIvlt~~~~~~~~~~al~~Ga~dyL~ 142 (233)
+++++.++ .. .+|+++...-.+.+.+.++++.|++.++.
T Consensus 63 ~~~i~~i~-~~---~ipvi~~Ggi~~~~~~~~~~~~Gad~V~l 101 (241)
T 1qo2_A 63 LPVLEKLS-EF---AEHIQIGGGIRSLDYAEKLRKLGYRRQIV 101 (241)
T ss_dssp HHHHHHGG-GG---GGGEEEESSCCSHHHHHHHHHTTCCEEEE
T ss_pred HHHHHHHH-hc---CCcEEEECCCCCHHHHHHHHHCCCCEEEE
No 494
>2fvy_A D-galactose-binding periplasmic protein; periplasmic binding protien, hinge, chemotaxis, transport,; HET: BGC; 0.92A {Escherichia coli} SCOP: c.93.1.1 PDB: 1glg_A* 2fw0_A* 2gbp_A* 2qw1_A* 2hph_A* 2ipn_A* 2ipm_A* 2ipl_A* 1gca_A* 1gcg_A 3ga5_A* 3gbp_A*
Probab=27.45 E-value=1.7e+02 Score=22.87 Aligned_cols=64 Identities=19% Similarity=0.273 Sum_probs=35.7
Q ss_pred HHHHHHHHhhcCC-EEEEECC---HHH---HHHHhhhhhhhhccCCCCCcccEEEEcCCCCCCC-HHHHHHHHhccCCCC
Q 026776 42 RKVIERLLTISSC-KVTAVDS---GRR---ALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMT-GYELLKKIKDSSALR 113 (233)
Q Consensus 42 ~~~l~~~L~~~g~-~v~~a~~---~~~---al~~l~~~~~~~~~~~~~~~~DlvllD~~mp~~~-g~~ll~~Lr~~~~~~ 113 (233)
...+++.+++.|| ++..+.. ... .++.+ ....+|-||+-.. ..+ ..+.++.+++.
T Consensus 21 ~~gi~~~a~~~g~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~vdgiii~~~--~~~~~~~~~~~~~~~---- 83 (309)
T 2fvy_A 21 RKAIEQDAKAAPDVQLLMNDSQNDQSKQNDQIDVL-----------LAKGVKALAINLV--DPAAAGTVIEKARGQ---- 83 (309)
T ss_dssp HHHHHHHHHTCTTEEEEEEECTTCHHHHHHHHHHH-----------HHTTCSEEEECCS--SGGGHHHHHHHHHTT----
T ss_pred HHHHHHHHHhcCCeEEEEecCCCCHHHHHHHHHHH-----------HHcCCCEEEEeCC--CcchhHHHHHHHHHC----
Confidence 3445566677898 8876543 322 23333 2346888877321 122 23566777642
Q ss_pred CCcEEEEeC
Q 026776 114 EIPVVIMSS 122 (233)
Q Consensus 114 ~~piIvlt~ 122 (233)
.+|+|++-.
T Consensus 84 ~iPvV~~~~ 92 (309)
T 2fvy_A 84 NVPVVFFNK 92 (309)
T ss_dssp TCCEEEESS
T ss_pred CCcEEEecC
Confidence 678887754
No 495
>1inl_A Spermidine synthase; beta-barrel, rossman fold, structural genomics, PSI, protein structure initiative; 1.50A {Thermotoga maritima} SCOP: c.66.1.17 PDB: 1jq3_A*
Probab=27.43 E-value=1.2e+02 Score=24.53 Aligned_cols=55 Identities=13% Similarity=0.091 Sum_probs=31.3
Q ss_pred CcEEEEEeCCHHHHHHHHHHHhh----c-CCEEE-EECCHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCC
Q 026776 29 EVHVLAVDDSFVDRKVIERLLTI----S-SCKVT-AVDSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMP 95 (233)
Q Consensus 29 ~~~ILIVddd~~~~~~l~~~L~~----~-g~~v~-~a~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp 95 (233)
..+|..||-++...+..++.+.. . .-.+. ...++.+.+.. ....||+|++|...|
T Consensus 114 ~~~v~~vDid~~~~~~a~~~~~~~~~~~~~~~v~~~~~D~~~~l~~------------~~~~fD~Ii~d~~~~ 174 (296)
T 1inl_A 114 VEKAILCEVDGLVIEAARKYLKQTSCGFDDPRAEIVIANGAEYVRK------------FKNEFDVIIIDSTDP 174 (296)
T ss_dssp CSEEEEEESCHHHHHHHHHHCHHHHGGGGCTTEEEEESCHHHHGGG------------CSSCEEEEEEEC---
T ss_pred CCEEEEEECCHHHHHHHHHHhHhhccccCCCceEEEECcHHHHHhh------------CCCCceEEEEcCCCc
Confidence 35788888888888777776643 1 11222 34454443221 134699999997544
No 496
>2pz0_A Glycerophosphoryl diester phosphodiesterase; glycerophosphodiester phosphodiesterase, T. tengcongensis; 1.91A {Thermoanaerobacter tengcongensis}
Probab=27.31 E-value=81 Score=24.91 Aligned_cols=39 Identities=15% Similarity=0.305 Sum_probs=27.2
Q ss_pred HHHHHHHhccCCCCCCcEEEEeCCCcHHHHHHHHHcCCceEEeC
Q 026776 100 YELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIVK 143 (233)
Q Consensus 100 ~~ll~~Lr~~~~~~~~piIvlt~~~~~~~~~~al~~Ga~dyL~K 143 (233)
-++++.+++. .+++.+.|- .+......+++.|++++++-
T Consensus 201 ~~~v~~~~~~----G~~v~~wTv-n~~~~~~~l~~~GvdgIiTD 239 (252)
T 2pz0_A 201 PELVEGCKKN----GVKLFPWTV-DRKEDMERMIKAGVDGIITD 239 (252)
T ss_dssp HHHHHHHHHT----TCEECCBCC-CSHHHHHHHHHHTCSEEEES
T ss_pred HHHHHHHHHC----CCEEEEECC-CCHHHHHHHHHcCCCEEEcC
Confidence 3566666654 556777764 45667778889999998873
No 497
>3hut_A Putative branched-chain amino acid ABC transporter; extracellular ligand-binding receptor,transport protein; 1.93A {Rhodospirillum rubrum atcc 11170}
Probab=27.31 E-value=1.5e+02 Score=23.88 Aligned_cols=83 Identities=10% Similarity=0.032 Sum_probs=46.9
Q ss_pred EEEEE-eCCHHH---HHHHHHHHhhcCCEEEE---E----CCHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCCCCCH
Q 026776 31 HVLAV-DDSFVD---RKVIERLLTISSCKVTA---V----DSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMTG 99 (233)
Q Consensus 31 ~ILIV-ddd~~~---~~~l~~~L~~~g~~v~~---a----~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp~~~g 99 (233)
+|.++ +++... .+.+++.+++.|..+.. + .+....+..+. ...+|+|++... ....
T Consensus 141 ~ia~i~~~~~~~~~~~~~~~~~l~~~g~~v~~~~~~~~~~~~~~~~~~~l~-----------~~~~d~i~~~~~--~~~a 207 (358)
T 3hut_A 141 SVAVIGVTTDWGLSSAQAFRKAFELRGGAVVVNEEVPPGNRRFDDVIDEIE-----------DEAPQAIYLAMA--YEDA 207 (358)
T ss_dssp EEEEEEESSHHHHHHHHHHHHHHHHTTCEEEEEEEECTTCCCCHHHHHHHH-----------HHCCSEEEEESC--HHHH
T ss_pred EEEEEecCcHHHHHHHHHHHHHHHHcCCEEEEEEecCCCCccHHHHHHHHH-----------hcCCCEEEEccC--chHH
Confidence 44444 344433 33455566777876542 2 24455555552 336899988642 2245
Q ss_pred HHHHHHHhccCCCCCCcEEEEeCCCcHHH
Q 026776 100 YELLKKIKDSSALREIPVVIMSSENILAR 128 (233)
Q Consensus 100 ~~ll~~Lr~~~~~~~~piIvlt~~~~~~~ 128 (233)
..+++.+++... .+|++..........
T Consensus 208 ~~~~~~~~~~g~--~~p~~~~~~~~~~~~ 234 (358)
T 3hut_A 208 APFLRALRARGS--ALPVYGSSALYSPKF 234 (358)
T ss_dssp HHHHHHHHHTTC--CCCEEECGGGCSHHH
T ss_pred HHHHHHHHHcCC--CCcEEecCcccCHHH
Confidence 678888888765 678765544444433
No 498
>1fxw_F Alpha2, platelet-activating factor acetylhydrolase IB beta subunit; alpha beta hydrolase fold; 2.10A {Bos taurus} SCOP: c.23.10.3 PDB: 1vyh_A
Probab=27.17 E-value=2e+02 Score=21.64 Aligned_cols=85 Identities=18% Similarity=0.183 Sum_probs=47.4
Q ss_pred CCcEEEEEeCCHHHHHH----HHHHHhhcCCEEEE-E---CCHHHHHHHhhhhhhhhccCCCCCcccEEEEcCCCCCCC-
Q 026776 28 EEVHVLAVDDSFVDRKV----IERLLTISSCKVTA-V---DSGRRALQFLGLDEEQSINGFDGLKVDLIITDYCMPGMT- 98 (233)
Q Consensus 28 ~~~~ILIVddd~~~~~~----l~~~L~~~g~~v~~-a---~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD~~mp~~~- 98 (233)
+..+|+++.|.-..... +.+.|.. +.+.- . .+..+.+..+... .+....||+|++-+...+..
T Consensus 38 ~~~~i~~~GDSit~g~~~~~~~~~~~~~--~~v~n~g~~G~t~~~~~~~~~~~------~l~~~~pd~vvi~~G~ND~~~ 109 (229)
T 1fxw_F 38 KEPDVLFVGDSMVQLMQQYEIWRELFSP--LHALNFGIGGDTTRHVLWRLKNG------ELENIKPKVIVVWVGTNNHEN 109 (229)
T ss_dssp CCCSEEEEESHHHHGGGGSHHHHHHTGG--GTEEEEECTTCCHHHHHHHHHTT------TTSSCCCSEEEEECCTTCTTS
T ss_pred CCCCEEEEecchhcCCCCchhHHHHcCC--CcceeeccCcchHHHHHHHHHcC------ccccCCCCEEEEEEecCCCCC
Confidence 45789999998765433 4555543 22222 1 2333444444210 11245789999987666541
Q ss_pred --------HHHHHHHHhccCCCCCCcEEEEeC
Q 026776 99 --------GYELLKKIKDSSALREIPVVIMSS 122 (233)
Q Consensus 99 --------g~~ll~~Lr~~~~~~~~piIvlt~ 122 (233)
-..+++.|++..+ ..+|++++.
T Consensus 110 ~~~~~~~~l~~~i~~l~~~~p--~~~iil~~~ 139 (229)
T 1fxw_F 110 TAEEVAGGIEAIVQLINTRQP--QAKIIVLGL 139 (229)
T ss_dssp CHHHHHHHHHHHHHHHHHHCT--TCEEEEECC
T ss_pred CHHHHHHHHHHHHHHHHHHCC--CCeEEEEeC
Confidence 1245667776544 667777654
No 499
>1wa3_A 2-keto-3-deoxy-6-phosphogluconate aldolase; KDPG, pyruvate, lyase; 1.9A {Thermotoga maritima} SCOP: c.1.10.1 PDB: 1vlw_A
Probab=27.15 E-value=57 Score=24.69 Aligned_cols=41 Identities=20% Similarity=0.251 Sum_probs=29.9
Q ss_pred HHHHHHHHhccCCCCCCcEEEEeCCCcHHHHHHHHHcCCceEEe
Q 026776 99 GYELLKKIKDSSALREIPVVIMSSENILARIDRCLEDGAEDFIV 142 (233)
Q Consensus 99 g~~ll~~Lr~~~~~~~~piIvlt~~~~~~~~~~al~~Ga~dyL~ 142 (233)
|.+.++++++..+ ++|+++..+-. .+.+.+++++|++.+..
T Consensus 137 g~~~~~~l~~~~~--~~pvia~GGI~-~~~~~~~~~~Ga~~v~v 177 (205)
T 1wa3_A 137 GPQFVKAMKGPFP--NVKFVPTGGVN-LDNVCEWFKAGVLAVGV 177 (205)
T ss_dssp HHHHHHHHHTTCT--TCEEEEBSSCC-TTTHHHHHHHTCSCEEE
T ss_pred CHHHHHHHHHhCC--CCcEEEcCCCC-HHHHHHHHHCCCCEEEE
Confidence 6778888876533 67887765544 46778899999998754
No 500
>1zx0_A Guanidinoacetate N-methyltransferase; structural genomics, structural genomics consortium; HET: SAH; 1.86A {Homo sapiens} PDB: 3orh_A* 1xcj_A* 1xcl_A* 1p1c_A* 1p1b_A* 1khh_A*
Probab=27.12 E-value=1.6e+02 Score=22.35 Aligned_cols=50 Identities=12% Similarity=-0.065 Sum_probs=34.3
Q ss_pred EEEEEeCCHHHHHHHHHHHhhcCCEEEE-ECCHHHHHHHhhhhhhhhccCCCCCcccEEEEc
Q 026776 31 HVLAVDDSFVDRKVIERLLTISSCKVTA-VDSGRRALQFLGLDEEQSINGFDGLKVDLIITD 91 (233)
Q Consensus 31 ~ILIVddd~~~~~~l~~~L~~~g~~v~~-a~~~~~al~~l~~~~~~~~~~~~~~~~DlvllD 91 (233)
+|..||-++...+..++.....+..+.. ..+..+.+..+ ....||+|++|
T Consensus 85 ~v~gvD~s~~~l~~a~~~~~~~~~~v~~~~~d~~~~~~~~-----------~~~~fD~V~~d 135 (236)
T 1zx0_A 85 EHWIIECNDGVFQRLRDWAPRQTHKVIPLKGLWEDVAPTL-----------PDGHFDGILYD 135 (236)
T ss_dssp EEEEEECCHHHHHHHHHHGGGCSSEEEEEESCHHHHGGGS-----------CTTCEEEEEEC
T ss_pred eEEEEcCCHHHHHHHHHHHHhcCCCeEEEecCHHHhhccc-----------CCCceEEEEEC
Confidence 7888999998888888877766665543 44554432222 34579999995
Done!