BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 026778
(233 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1X7Y|A Chain A, Crystal Structure Of The Human Mitochondrial
Branched-chain Alpha- Ketoacid Dehydrogenase
Length = 400
Score = 214 bits (544), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 106/216 (49%), Positives = 137/216 (63%)
Query: 1 MRFISESSEERIPCYRVLDDDGQPFPDSSFVKVSEGVAIKMYNDMVTLQTMDTIFYEAQR 60
+ FI + IP YRV+D GQ S + + +K+Y M L TMD I YE+QR
Sbjct: 20 LEFIQPNVISGIPIYRVMDRQGQIINPSEDPHLPKEKVLKLYKSMTLLNTMDRILYESQR 79
Query: 61 QGRISFYLTTSGEEXXXXXXXXXXKNDDFVVPQYREPGVLLWRGFSMQEFANQCFGNKAD 120
QGRISFY+T GEE N D V QYRE GVL++R + ++ F QC+GN +D
Sbjct: 80 QGRISFYMTNYGEEGTHVGSAAALDNTDLVFGQYREAGVLMYRDYPLELFMAQCYGNISD 139
Query: 121 YGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEG 180
GKGRQMP+HYG + ++ T+SS +ATQ+P AVGAAYA K + + YFG+G SEG
Sbjct: 140 LGKGRQMPVHYGCKERHFVTISSPLATQIPQAVGAAYAAKRANANRVVICYFGEGAASEG 199
Query: 181 DFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFR 216
D HA NF+A E P+IF CRNNG+AISTP S+Q+R
Sbjct: 200 DAHAGFNFAATLECPIIFFCRNNGYAISTPTSEQYR 235
>pdb|1V11|A Chain A, Crosstalk Between Cofactor Binding And The Phosphorylation
Loop Conformation In The Bckd Machine
Length = 400
Score = 214 bits (544), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 106/216 (49%), Positives = 137/216 (63%)
Query: 1 MRFISESSEERIPCYRVLDDDGQPFPDSSFVKVSEGVAIKMYNDMVTLQTMDTIFYEAQR 60
+ FI + IP YRV+D GQ S + + +K+Y M L TMD I YE+QR
Sbjct: 20 LEFIQPNVISGIPIYRVMDRQGQIINPSEDPHLPKEKVLKLYKSMTLLNTMDRILYESQR 79
Query: 61 QGRISFYLTTSGEEXXXXXXXXXXKNDDFVVPQYREPGVLLWRGFSMQEFANQCFGNKAD 120
QGRISFY+T GEE N D V QYRE GVL++R + ++ F QC+GN +D
Sbjct: 80 QGRISFYMTNYGEEGTHVGSAAALDNTDLVFGQYREAGVLMYRDYPLELFMAQCYGNISD 139
Query: 121 YGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEG 180
GKGRQMP+HYG + ++ T+SS +ATQ+P AVGAAYA K + + YFG+G SEG
Sbjct: 140 LGKGRQMPVHYGCKERHFVTISSPLATQIPQAVGAAYAAKRANANRVVICYFGEGAASEG 199
Query: 181 DFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFR 216
D HA NF+A E P+IF CRNNG+AISTP S+Q+R
Sbjct: 200 DAHAGFNFAATLECPIIFFCRNNGYAISTPTSEQYR 235
>pdb|1X7X|A Chain A, Crystal Structure Of The Human Mitochondrial
Branched-Chain Alpha- Ketoacid Dehydrogenase
Length = 400
Score = 214 bits (544), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 106/216 (49%), Positives = 137/216 (63%)
Query: 1 MRFISESSEERIPCYRVLDDDGQPFPDSSFVKVSEGVAIKMYNDMVTLQTMDTIFYEAQR 60
+ FI + IP YRV+D GQ S + + +K+Y M L TMD I YE+QR
Sbjct: 20 LEFIQPNVISGIPIYRVMDRQGQIINPSEDPHLPKEKVLKLYKSMTLLNTMDRILYESQR 79
Query: 61 QGRISFYLTTSGEEXXXXXXXXXXKNDDFVVPQYREPGVLLWRGFSMQEFANQCFGNKAD 120
QGRISFY+T GEE N D V QYRE GVL++R + ++ F QC+GN +D
Sbjct: 80 QGRISFYMTNYGEEGTHVGSAAALDNTDLVFGQYREAGVLMYRDYPLELFMAQCYGNISD 139
Query: 121 YGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEG 180
GKGRQMP+HYG + ++ T+SS +ATQ+P AVGAAYA K + + YFG+G SEG
Sbjct: 140 LGKGRQMPVHYGCKERHFVTISSPLATQIPQAVGAAYAAKRANANRVVICYFGEGAASEG 199
Query: 181 DFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFR 216
D HA NF+A E P+IF CRNNG+AISTP S+Q+R
Sbjct: 200 DAHAGFNFAATLECPIIFFCRNNGYAISTPTSEQYR 235
>pdb|1DTW|A Chain A, Human Branched-Chain Alpha-Keto Acid Dehydrogenase
pdb|1OLS|A Chain A, Roles Of His291-Alpha And His146-Beta' In The Reductive
Acylation Reaction Catalyzed By Human Branched-Chain
Alpha-Ketoacid Dehydrogenase
pdb|1OLX|A Chain A, Roles Of His291-alpha And His146-beta' In The Reductive
Acylation Reaction Catalyzed By Human Branched-chain
Alpha-ketoacid Dehydrogenase
pdb|1U5B|A Chain A, Crystal Structure Of The Human Mitochondrial
Branched-Chain Alpha- Ketoacid Dehydrogenase
pdb|1WCI|A Chain A, Reactivity Modulation Of Human Branched-chain Alpha-
Ketoacid Dehydrogenase By An Internal Molecular Switch
pdb|2BEU|A Chain A, Reactivity Modulation Of Human Branched-Chain Alpha-
Ketoacid Dehydrogenase By An Internal Molecular Switch
pdb|2BEV|A Chain A, Reactivity Modulation Of Human Branched-Chain Alpha-
Ketoacid Dehydrogenase By An Internal Molecular Switch
pdb|2BEW|A Chain A, Reactivity Modulation Of Human Branched-Chain Alpha-
Ketoacid Dehydrogenase By An Internal Molecular Switch
Length = 400
Score = 214 bits (544), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 106/216 (49%), Positives = 137/216 (63%)
Query: 1 MRFISESSEERIPCYRVLDDDGQPFPDSSFVKVSEGVAIKMYNDMVTLQTMDTIFYEAQR 60
+ FI + IP YRV+D GQ S + + +K+Y M L TMD I YE+QR
Sbjct: 20 LEFIQPNVISGIPIYRVMDRQGQIINPSEDPHLPKEKVLKLYKSMTLLNTMDRILYESQR 79
Query: 61 QGRISFYLTTSGEEXXXXXXXXXXKNDDFVVPQYREPGVLLWRGFSMQEFANQCFGNKAD 120
QGRISFY+T GEE N D V QYRE GVL++R + ++ F QC+GN +D
Sbjct: 80 QGRISFYMTNYGEEGTHVGSAAALDNTDLVFGQYREAGVLMYRDYPLELFMAQCYGNISD 139
Query: 121 YGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEG 180
GKGRQMP+HYG + ++ T+SS +ATQ+P AVGAAYA K + + YFG+G SEG
Sbjct: 140 LGKGRQMPVHYGCKERHFVTISSPLATQIPQAVGAAYAAKRANANRVVICYFGEGAASEG 199
Query: 181 DFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFR 216
D HA NF+A E P+IF CRNNG+AISTP S+Q+R
Sbjct: 200 DAHAGFNFAATLECPIIFFCRNNGYAISTPTSEQYR 235
>pdb|1V1M|A Chain A, Crosstalk Between Cofactor Binding And The Phosphorylation
Loop Conformation In The Bckd Machine
Length = 400
Score = 214 bits (544), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 106/216 (49%), Positives = 137/216 (63%)
Query: 1 MRFISESSEERIPCYRVLDDDGQPFPDSSFVKVSEGVAIKMYNDMVTLQTMDTIFYEAQR 60
+ FI + IP YRV+D GQ S + + +K+Y M L TMD I YE+QR
Sbjct: 20 LEFIQPNVISGIPIYRVMDRQGQIINPSEDPHLPKEKVLKLYKSMTLLNTMDRILYESQR 79
Query: 61 QGRISFYLTTSGEEXXXXXXXXXXKNDDFVVPQYREPGVLLWRGFSMQEFANQCFGNKAD 120
QGRISFY+T GEE N D V QYRE GVL++R + ++ F QC+GN +D
Sbjct: 80 QGRISFYMTNYGEEGTHVGSAAALDNTDLVFGQYREAGVLMYRDYPLELFMAQCYGNISD 139
Query: 121 YGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEG 180
GKGRQMP+HYG + ++ T+SS +ATQ+P AVGAAYA K + + YFG+G SEG
Sbjct: 140 LGKGRQMPVHYGCKERHFVTISSPLATQIPQAVGAAYAAKRANANRVVICYFGEGAASEG 199
Query: 181 DFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFR 216
D HA NF+A E P+IF CRNNG+AISTP S+Q+R
Sbjct: 200 DAHAGFNFAATLECPIIFFCRNNGYAISTPTSEQYR 235
>pdb|1X7Z|A Chain A, Crystal Structure Of The Human Mitochondrial
Branched-Chain Alpha- Ketoacid Dehydrogenase
Length = 400
Score = 214 bits (544), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 106/216 (49%), Positives = 137/216 (63%)
Query: 1 MRFISESSEERIPCYRVLDDDGQPFPDSSFVKVSEGVAIKMYNDMVTLQTMDTIFYEAQR 60
+ FI + IP YRV+D GQ S + + +K+Y M L TMD I YE+QR
Sbjct: 20 LEFIQPNVISGIPIYRVMDRQGQIINPSEDPHLPKEKVLKLYKSMTLLNTMDRILYESQR 79
Query: 61 QGRISFYLTTSGEEXXXXXXXXXXKNDDFVVPQYREPGVLLWRGFSMQEFANQCFGNKAD 120
QGRISFY+T GEE N D V QYRE GVL++R + ++ F QC+GN +D
Sbjct: 80 QGRISFYMTNYGEEGTHVGSAAALDNTDLVFGQYREAGVLMYRDYPLELFMAQCYGNISD 139
Query: 121 YGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEG 180
GKGRQMP+HYG + ++ T+SS +ATQ+P AVGAAYA K + + YFG+G SEG
Sbjct: 140 LGKGRQMPVHYGCKERHFVTISSPLATQIPQAVGAAYAAKRANANRVVICYFGEGAASEG 199
Query: 181 DFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFR 216
D HA NF+A E P+IF CRNNG+AISTP S+Q+R
Sbjct: 200 DAHAGFNFAATLECPIIFFCRNNGYAISTPTSEQYR 235
>pdb|2J9F|A Chain A, Human Branched-Chain Alpha-Ketoacid Dehydrogenase-
Decarboxylase E1b
pdb|2J9F|C Chain C, Human Branched-Chain Alpha-Ketoacid Dehydrogenase-
Decarboxylase E1b
Length = 400
Score = 214 bits (544), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 106/216 (49%), Positives = 137/216 (63%)
Query: 1 MRFISESSEERIPCYRVLDDDGQPFPDSSFVKVSEGVAIKMYNDMVTLQTMDTIFYEAQR 60
+ FI + IP YRV+D GQ S + + +K+Y M L TMD I YE+QR
Sbjct: 20 LEFIQPNVISGIPIYRVMDRQGQIINPSEDPHLPKEKVLKLYKSMTLLNTMDRILYESQR 79
Query: 61 QGRISFYLTTSGEEXXXXXXXXXXKNDDFVVPQYREPGVLLWRGFSMQEFANQCFGNKAD 120
QGRISFY+T GEE N D V QYRE GVL++R + ++ F QC+GN +D
Sbjct: 80 QGRISFYMTNYGEEGTHVGSAAALDNTDLVFGQYREAGVLMYRDYPLELFMAQCYGNISD 139
Query: 121 YGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEG 180
GKGRQMP+HYG + ++ T+SS +ATQ+P AVGAAYA K + + YFG+G SEG
Sbjct: 140 LGKGRQMPVHYGCKERHFVTISSPLATQIPQAVGAAYAAKRANANRVVICYFGEGAASEG 199
Query: 181 DFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFR 216
D HA NF+A E P+IF CRNNG+AISTP S+Q+R
Sbjct: 200 DAHAGFNFAATLECPIIFFCRNNGYAISTPTSEQYR 235
>pdb|2BFF|A Chain A, Reactivity Modulation Of Human Branched-Chain Alpha-
Ketoacid Dehydrogenase By An Internal Molecular Switch
Length = 400
Score = 214 bits (544), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 106/216 (49%), Positives = 137/216 (63%)
Query: 1 MRFISESSEERIPCYRVLDDDGQPFPDSSFVKVSEGVAIKMYNDMVTLQTMDTIFYEAQR 60
+ FI + IP YRV+D GQ S + + +K+Y M L TMD I YE+QR
Sbjct: 20 LEFIQPNVISGIPIYRVMDRQGQIINPSEDPHLPKEKVLKLYKSMTLLNTMDRILYESQR 79
Query: 61 QGRISFYLTTSGEEXXXXXXXXXXKNDDFVVPQYREPGVLLWRGFSMQEFANQCFGNKAD 120
QGRISFY+T GEE N D V QYRE GVL++R + ++ F QC+GN +D
Sbjct: 80 QGRISFYMTNYGEEGTHVGSAAALDNTDLVFGQYREAGVLMYRDYPLELFMAQCYGNISD 139
Query: 121 YGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEG 180
GKGRQMP+HYG + ++ T+SS +ATQ+P AVGAAYA K + + YFG+G SEG
Sbjct: 140 LGKGRQMPVHYGCKERHFVTISSPLATQIPQAVGAAYAAKRANANRVVICYFGEGAASEG 199
Query: 181 DFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFR 216
D HA NF+A E P+IF CRNNG+AISTP S+Q+R
Sbjct: 200 DAHAGFNFAATLECPIIFFCRNNGYAISTPTSEQYR 235
>pdb|1X80|A Chain A, Crystal Structure Of The Human Mitochondrial
Branched-chain Alpha- Ketoacid Dehydrogenase
Length = 400
Score = 214 bits (544), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 106/216 (49%), Positives = 137/216 (63%)
Query: 1 MRFISESSEERIPCYRVLDDDGQPFPDSSFVKVSEGVAIKMYNDMVTLQTMDTIFYEAQR 60
+ FI + IP YRV+D GQ S + + +K+Y M L TMD I YE+QR
Sbjct: 20 LEFIQPNVISGIPIYRVMDRQGQIINPSEDPHLPKEKVLKLYKSMTLLNTMDRILYESQR 79
Query: 61 QGRISFYLTTSGEEXXXXXXXXXXKNDDFVVPQYREPGVLLWRGFSMQEFANQCFGNKAD 120
QGRISFY+T GEE N D V QYRE GVL++R + ++ F QC+GN +D
Sbjct: 80 QGRISFYMTNYGEEGTHVGSAAALDNTDLVFGQYREAGVLMYRDYPLELFMAQCYGNISD 139
Query: 121 YGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEG 180
GKGRQMP+HYG + ++ T+SS +ATQ+P AVGAAYA K + + YFG+G SEG
Sbjct: 140 LGKGRQMPVHYGCKERHFVTISSPLATQIPQAVGAAYAAKRANANRVVICYFGEGAASEG 199
Query: 181 DFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFR 216
D HA NF+A E P+IF CRNNG+AISTP S+Q+R
Sbjct: 200 DAHAGFNFAATLECPIIFFCRNNGYAISTPTSEQYR 235
>pdb|1X7W|A Chain A, Crystal Structure Of The Human Mitochondrial
Branched-Chain Alpha- Ketoacid Dehydrogenase
Length = 400
Score = 214 bits (544), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 106/216 (49%), Positives = 137/216 (63%)
Query: 1 MRFISESSEERIPCYRVLDDDGQPFPDSSFVKVSEGVAIKMYNDMVTLQTMDTIFYEAQR 60
+ FI + IP YRV+D GQ S + + +K+Y M L TMD I YE+QR
Sbjct: 20 LEFIQPNVISGIPIYRVMDRQGQIINPSEDPHLPKEKVLKLYKSMTLLNTMDRILYESQR 79
Query: 61 QGRISFYLTTSGEEXXXXXXXXXXKNDDFVVPQYREPGVLLWRGFSMQEFANQCFGNKAD 120
QGRISFY+T GEE N D V QYRE GVL++R + ++ F QC+GN +D
Sbjct: 80 QGRISFYMTNYGEEGTHVGSAAALDNTDLVFGQYREAGVLMYRDYPLELFMAQCYGNISD 139
Query: 121 YGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEG 180
GKGRQMP+HYG + ++ T+SS +ATQ+P AVGAAYA K + + YFG+G SEG
Sbjct: 140 LGKGRQMPVHYGCKERHFVTISSPLATQIPQAVGAAYAAKRANANRVVICYFGEGAASEG 199
Query: 181 DFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFR 216
D HA NF+A E P+IF CRNNG+AISTP S+Q+R
Sbjct: 200 DAHAGFNFAATLECPIIFFCRNNGYAISTPTSEQYR 235
>pdb|1V16|A Chain A, Crosstalk Between Cofactor Binding And The Phosphorylation
Loop Conformation In The Bckd Machine
Length = 400
Score = 214 bits (544), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 106/216 (49%), Positives = 137/216 (63%)
Query: 1 MRFISESSEERIPCYRVLDDDGQPFPDSSFVKVSEGVAIKMYNDMVTLQTMDTIFYEAQR 60
+ FI + IP YRV+D GQ S + + +K+Y M L TMD I YE+QR
Sbjct: 20 LEFIQPNVISGIPIYRVMDRQGQIINPSEDPHLPKEKVLKLYKSMTLLNTMDRILYESQR 79
Query: 61 QGRISFYLTTSGEEXXXXXXXXXXKNDDFVVPQYREPGVLLWRGFSMQEFANQCFGNKAD 120
QGRISFY+T GEE N D V QYRE GVL++R + ++ F QC+GN +D
Sbjct: 80 QGRISFYMTNYGEEGTHVGSAAALDNTDLVFGQYREAGVLMYRDYPLELFMAQCYGNISD 139
Query: 121 YGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEG 180
GKGRQMP+HYG + ++ T+SS +ATQ+P AVGAAYA K + + YFG+G SEG
Sbjct: 140 LGKGRQMPVHYGCKERHFVTISSPLATQIPQAVGAAYAAKRANANRVVICYFGEGAASEG 199
Query: 181 DFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFR 216
D HA NF+A E P+IF CRNNG+AISTP S+Q+R
Sbjct: 200 DAHAGFNFAATLECPIIFFCRNNGYAISTPTSEQYR 235
>pdb|1OLU|A Chain A, Roles Of His291-Alpha And His146-Beta' In The Reductive
Acylation Reaction Catalyzed By Human Branched-Chain
Alpha-Ketoacid Dehydrogenase
pdb|1V1R|A Chain A, Crosstalk Between Cofactor Binding And The Phosphorylation
Loop Conformation In The Bckd Machine
Length = 400
Score = 213 bits (543), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 106/216 (49%), Positives = 137/216 (63%)
Query: 1 MRFISESSEERIPCYRVLDDDGQPFPDSSFVKVSEGVAIKMYNDMVTLQTMDTIFYEAQR 60
+ FI + IP YRV+D GQ S + + +K+Y M L TMD I YE+QR
Sbjct: 20 LEFIQPNVISGIPIYRVMDRQGQIINPSEDPHLPKEKVLKLYKSMTLLNTMDRILYESQR 79
Query: 61 QGRISFYLTTSGEEXXXXXXXXXXKNDDFVVPQYREPGVLLWRGFSMQEFANQCFGNKAD 120
QGRISFY+T GEE N D V QYRE GVL++R + ++ F QC+GN +D
Sbjct: 80 QGRISFYMTNYGEEGTHVGSAAALDNTDLVFGQYREAGVLMYRDYPLELFMAQCYGNISD 139
Query: 121 YGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEG 180
GKGRQMP+HYG + ++ T+SS +ATQ+P AVGAAYA K + + YFG+G SEG
Sbjct: 140 LGKGRQMPVHYGCKERHFVTISSPLATQIPQAVGAAYAAKRANANRVVICYFGEGAASEG 199
Query: 181 DFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFR 216
D HA NF+A E P+IF CRNNG+AISTP S+Q+R
Sbjct: 200 DAHAGFNFAATLECPIIFFCRNNGYAISTPTSEQYR 235
>pdb|2BFC|A Chain A, Reactivity Modulation Of Human Branched-Chain Alpha-
Ketoacid Dehydrogenase By An Internal Molecular Switch
Length = 400
Score = 212 bits (539), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 105/216 (48%), Positives = 137/216 (63%)
Query: 1 MRFISESSEERIPCYRVLDDDGQPFPDSSFVKVSEGVAIKMYNDMVTLQTMDTIFYEAQR 60
+ FI + IP YRV+D GQ S + + +K+Y M L TMD I YE+QR
Sbjct: 20 LEFIQPNVISGIPIYRVMDRQGQIINPSEDPHLPKEKVLKLYKSMTLLNTMDRILYESQR 79
Query: 61 QGRISFYLTTSGEEXXXXXXXXXXKNDDFVVPQYREPGVLLWRGFSMQEFANQCFGNKAD 120
QGRISFY+T GEE N D V Q+RE GVL++R + ++ F QC+GN +D
Sbjct: 80 QGRISFYMTNYGEEGTHVGSAAALDNTDLVFGQFREAGVLMYRDYPLELFMAQCYGNISD 139
Query: 121 YGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEG 180
GKGRQMP+HYG + ++ T+SS +ATQ+P AVGAAYA K + + YFG+G SEG
Sbjct: 140 LGKGRQMPVHYGCKERHFVTISSPLATQIPQAVGAAYAAKRANANRVVICYFGEGAASEG 199
Query: 181 DFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFR 216
D HA NF+A E P+IF CRNNG+AISTP S+Q+R
Sbjct: 200 DAHAGFNFAATLECPIIFFCRNNGYAISTPTSEQYR 235
>pdb|2BFB|A Chain A, Reactivity Modulation Of Human Branched-Chain Alpha-
Ketoacid Dehydrogenase By An Internal Molecular Switch
Length = 400
Score = 211 bits (537), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 105/216 (48%), Positives = 136/216 (62%)
Query: 1 MRFISESSEERIPCYRVLDDDGQPFPDSSFVKVSEGVAIKMYNDMVTLQTMDTIFYEAQR 60
+ FI + IP YRV+D GQ S + + +K+Y M L TMD I YE+QR
Sbjct: 20 LEFIQPNVISGIPIYRVMDRQGQIINPSEDPHLPKEKVLKLYKSMTLLNTMDRILYESQR 79
Query: 61 QGRISFYLTTSGEEXXXXXXXXXXKNDDFVVPQYREPGVLLWRGFSMQEFANQCFGNKAD 120
QGRISFY+T GEE N D V YRE GVL++R + ++ F QC+GN +D
Sbjct: 80 QGRISFYMTNYGEEGTHVGSAAALDNTDLVFGAYREAGVLMYRDYPLELFMAQCYGNISD 139
Query: 121 YGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEG 180
GKGRQMP+HYG + ++ T+SS +ATQ+P AVGAAYA K + + YFG+G SEG
Sbjct: 140 LGKGRQMPVHYGCKERHFVTISSPLATQIPQAVGAAYAAKRANANRVVICYFGEGAASEG 199
Query: 181 DFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFR 216
D HA NF+A E P+IF CRNNG+AISTP S+Q+R
Sbjct: 200 DAHAGFNFAATLECPIIFFCRNNGYAISTPTSEQYR 235
>pdb|2BFD|A Chain A, Reactivity Modulation Of Human Branched-Chain Alpha-
Ketoacid Dehydrogenase By An Internal Molecular Switch
Length = 400
Score = 210 bits (535), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 105/216 (48%), Positives = 136/216 (62%)
Query: 1 MRFISESSEERIPCYRVLDDDGQPFPDSSFVKVSEGVAIKMYNDMVTLQTMDTIFYEAQR 60
+ FI + IP YRV+D GQ S + + +K+Y M L TMD I YE+QR
Sbjct: 20 LEFIQPNVISGIPIYRVMDRQGQIINPSEDPHLPKEKVLKLYKSMTLLNTMDRILYESQR 79
Query: 61 QGRISFYLTTSGEEXXXXXXXXXXKNDDFVVPQYREPGVLLWRGFSMQEFANQCFGNKAD 120
QGRISFY+T GEE N D V Q RE GVL++R + ++ F QC+GN +D
Sbjct: 80 QGRISFYMTNYGEEGTHVGSAAALDNTDLVFGQAREAGVLMYRDYPLELFMAQCYGNISD 139
Query: 121 YGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEG 180
GKGRQMP+HYG + ++ T+SS +ATQ+P AVGAAYA K + + YFG+G SEG
Sbjct: 140 LGKGRQMPVHYGCKERHFVTISSPLATQIPQAVGAAYAAKRANANRVVICYFGEGAASEG 199
Query: 181 DFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFR 216
D HA NF+A E P+IF CRNNG+AISTP S+Q+R
Sbjct: 200 DAHAGFNFAATLECPIIFFCRNNGYAISTPTSEQYR 235
>pdb|2BFE|A Chain A, Reactivity Modulation Of Human Branched-Chain Alpha-
Ketoacid Dehydrogenase By An Internal Molecular Switch
Length = 400
Score = 207 bits (528), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 104/216 (48%), Positives = 135/216 (62%)
Query: 1 MRFISESSEERIPCYRVLDDDGQPFPDSSFVKVSEGVAIKMYNDMVTLQTMDTIFYEAQR 60
+ FI + IP YRV+D GQ S + + +K+Y M L TMD I YE+QR
Sbjct: 20 LEFIQPNVISGIPIYRVMDRQGQIINPSEDPHLPKEKVLKLYKSMTLLNTMDRILYESQR 79
Query: 61 QGRISFYLTTSGEEXXXXXXXXXXKNDDFVVPQYREPGVLLWRGFSMQEFANQCFGNKAD 120
QGRISFY+T GEE N D V RE GVL++R + ++ F QC+GN +D
Sbjct: 80 QGRISFYMTNYGEEGTHVGSAAALDNTDLVFGAAREAGVLMYRDYPLELFMAQCYGNISD 139
Query: 121 YGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEG 180
GKGRQMP+HYG + ++ T+SS +ATQ+P AVGAAYA K + + YFG+G SEG
Sbjct: 140 LGKGRQMPVHYGCKERHFVTISSPLATQIPQAVGAAYAAKRANANRVVICYFGEGAASEG 199
Query: 181 DFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFR 216
D HA NF+A E P+IF CRNNG+AISTP S+Q+R
Sbjct: 200 DAHAGFNFAATLECPIIFFCRNNGYAISTPTSEQYR 235
>pdb|1UM9|A Chain A, Branched-chain 2-oxo Acid Dehydrogenase (e1) From Thermus
Thermophilus Hb8 In Apo-form
pdb|1UM9|C Chain C, Branched-chain 2-oxo Acid Dehydrogenase (e1) From Thermus
Thermophilus Hb8 In Apo-form
pdb|1UMB|A Chain A, Branched-Chain 2-Oxo Acid Dehydrogenase (E1) From Thermus
Thermophilus Hb8 In Holo-Form
pdb|1UMB|C Chain C, Branched-Chain 2-Oxo Acid Dehydrogenase (E1) From Thermus
Thermophilus Hb8 In Holo-Form
pdb|1UMC|A Chain A, Branched-Chain 2-Oxo Acid Dehydrogenase (E1) From Thermus
Thermophilus Hb8 With 4-Methylpentanoate
pdb|1UMC|C Chain C, Branched-Chain 2-Oxo Acid Dehydrogenase (E1) From Thermus
Thermophilus Hb8 With 4-Methylpentanoate
pdb|1UMD|A Chain A, Branched-Chain 2-Oxo Acid Dehydrogenase (E1) From Thermus
Thermophilus Hb8 With 4-Methyl-2-Oxopentanoate As An
Intermediate
pdb|1UMD|C Chain C, Branched-Chain 2-Oxo Acid Dehydrogenase (E1) From Thermus
Thermophilus Hb8 With 4-Methyl-2-Oxopentanoate As An
Intermediate
Length = 367
Score = 137 bits (344), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 79/204 (38%), Positives = 112/204 (54%), Gaps = 4/204 (1%)
Query: 16 RVLDDDGQPFPDSSFVKVSEGVAIK-MYNDMVTLQTMDTIFYEAQRQGRISFYLTTSGEE 74
R++ ++G+ D F EG ++ +Y DM+ + +D + R G+ SF +G E
Sbjct: 17 RLIGEEGEWLGD--FPLDLEGEKLRRLYRDMLAARMLDERYTILIRTGKTSFIAPAAGHE 74
Query: 75 XXXXXXXXXXKND-DFVVPQYREPGVLLWRGFSMQEFANQCFGNKADYGKGRQMPIHYGS 133
+ D+V P YR+ G+ L G ++E Q KAD KGRQMP H GS
Sbjct: 75 AAQVAIAHAIRPGFDWVFPYYRDHGLALALGIPLKELLGQMLATKADPNKGRQMPEHPGS 134
Query: 134 NKHNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTE 193
N+FTV+S IA+ +P A GAA ++K+ R AV FGDG TSEGD++A +NF+AV
Sbjct: 135 KALNFFTVASPIASHVPPAAGAAISMKLLRTGQVAVCTFGDGATSEGDWYAGINFAAVQG 194
Query: 194 APVIFICRNNGWAISTPISDQFRS 217
AP +FI NN +AIS Q S
Sbjct: 195 APAVFIAENNFYAISVDYRHQTHS 218
>pdb|2BP7|A Chain A, New Crystal Form Of The Pseudomonas Putida Branched-Chain
Dehydrogenase (E1)
pdb|2BP7|C Chain C, New Crystal Form Of The Pseudomonas Putida Branched-Chain
Dehydrogenase (E1)
pdb|2BP7|E Chain E, New Crystal Form Of The Pseudomonas Putida Branched-Chain
Dehydrogenase (E1)
pdb|2BP7|G Chain G, New Crystal Form Of The Pseudomonas Putida Branched-Chain
Dehydrogenase (E1)
Length = 410
Score = 123 bits (308), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 71/197 (36%), Positives = 98/197 (49%), Gaps = 7/197 (3%)
Query: 16 RVLDDDGQ---PFPDSSFVKVSEGVAIKMYNDMVTLQTMDTIFYEAQRQGRISFYLTTSG 72
RVLD+ G P+ + + + + M+ + D+ AQRQ ++SFY+ + G
Sbjct: 56 RVLDEQGDAQGPWAED----IDPQILRQGMRAMLKTRIFDSRMVVAQRQKKMSFYMQSLG 111
Query: 73 EEXXXXXXXXXXKNDDFVVPQYREPGVLLWRGFSMQEFANQCFGNKADYGKGRQMPIHYG 132
EE D P YR+ +L+ R S+ E Q N+ D KGRQ+PI Y
Sbjct: 112 EEAIGSGQALALNRTDMCFPTYRQQSILMARDVSLVEMICQLLSNERDPLKGRQLPIMYS 171
Query: 133 SNKHNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVT 192
+ +FT+S +ATQ AVG A A + A + GDG T+E DFH AL F+ V
Sbjct: 172 VREAGFFTISGNLATQFVQAVGWAMASAIKGDTKIASAWIGDGATAESDFHTALTFAHVY 231
Query: 193 EAPVIFICRNNGWAIST 209
APVI NN WAIST
Sbjct: 232 RAPVILNVVNNQWAIST 248
>pdb|3DUF|A Chain A, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DUF|C Chain C, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DUF|E Chain E, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DUF|G Chain G, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DV0|A Chain A, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DV0|C Chain C, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DV0|E Chain E, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DV0|G Chain G, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
Length = 369
Score = 116 bits (291), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 67/209 (32%), Positives = 107/209 (51%), Gaps = 9/209 (4%)
Query: 6 ESSEERIPCYRVLDDDGQPFPDSSFVKVSEGVAIKMYNDMVTLQTMDTIFYEAQRQGRIS 65
E E+ P +++L+++G+ + + ++S+ ++ MV + +D RQGR+
Sbjct: 15 EKVAEQFPTFQILNEEGEVVNEEAMPELSDEQLKELMRRMVYTRILDQRSISLNRQGRLG 74
Query: 66 FYLTTSGEEXXXXXXXXXXKNDDFVVPQYREPGVLLWRGFSMQEFANQCFGNKADYGKGR 125
FY T+G+E + +DF++P YR+ ++W G + Q F + G
Sbjct: 75 FYAPTAGQEASQIASHFALEKEDFILPGYRDVPQIIWHGLPL----YQAFLFSRGHFHGN 130
Query: 126 QMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAA 185
Q+P N I Q A G A LKM K A A+TY GDGGTS+GDF+
Sbjct: 131 QIP-----EGVNVLPPQIIIGAQYIQAAGVALGLKMRGKKAVAITYTGDGGTSQGDFYEG 185
Query: 186 LNFSAVTEAPVIFICRNNGWAISTPISDQ 214
+NF+ +AP IF+ +NN +AISTP+ Q
Sbjct: 186 INFAGAFKAPAIFVVQNNRFAISTPVEKQ 214
>pdb|1W85|A Chain A, The Crystal Structure Of Pyruvate Dehydrogenase E1 Bound
To The Peripheral Subunit Binding Domain Of E2
pdb|1W85|C Chain C, The Crystal Structure Of Pyruvate Dehydrogenase E1 Bound
To The Peripheral Subunit Binding Domain Of E2
pdb|1W85|E Chain E, The Crystal Structure Of Pyruvate Dehydrogenase E1 Bound
To The Peripheral Subunit Binding Domain Of E2
pdb|1W85|G Chain G, The Crystal Structure Of Pyruvate Dehydrogenase E1 Bound
To The Peripheral Subunit Binding Domain Of E2
Length = 368
Score = 116 bits (290), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 67/209 (32%), Positives = 107/209 (51%), Gaps = 9/209 (4%)
Query: 6 ESSEERIPCYRVLDDDGQPFPDSSFVKVSEGVAIKMYNDMVTLQTMDTIFYEAQRQGRIS 65
E E+ P +++L+++G+ + + ++S+ ++ MV + +D RQGR+
Sbjct: 14 EKVAEQFPTFQILNEEGEVVNEEAMPELSDEQLKELMRRMVYTRILDQRSISLNRQGRLG 73
Query: 66 FYLTTSGEEXXXXXXXXXXKNDDFVVPQYREPGVLLWRGFSMQEFANQCFGNKADYGKGR 125
FY T+G+E + +DF++P YR+ ++W G + Q F + G
Sbjct: 74 FYAPTAGQEASQIASHFALEKEDFILPGYRDVPQIIWHGLPL----YQAFLFSRGHFHGN 129
Query: 126 QMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAA 185
Q+P N I Q A G A LKM K A A+TY GDGGTS+GDF+
Sbjct: 130 QIP-----EGVNVLPPQIIIGAQYIQAAGVALGLKMRGKKAVAITYTGDGGTSQGDFYEG 184
Query: 186 LNFSAVTEAPVIFICRNNGWAISTPISDQ 214
+NF+ +AP IF+ +NN +AISTP+ Q
Sbjct: 185 INFAGAFKAPAIFVVQNNRFAISTPVEKQ 213
>pdb|1W88|A Chain A, The Crystal Structure Of Pyruvate Dehydrogenase E1(D180n,
E183q) Bound To The Peripheral Subunit Binding Domain Of
E2
pdb|1W88|C Chain C, The Crystal Structure Of Pyruvate Dehydrogenase E1(D180n,
E183q) Bound To The Peripheral Subunit Binding Domain Of
E2
pdb|1W88|E Chain E, The Crystal Structure Of Pyruvate Dehydrogenase E1(D180n,
E183q) Bound To The Peripheral Subunit Binding Domain Of
E2
pdb|1W88|G Chain G, The Crystal Structure Of Pyruvate Dehydrogenase E1(D180n,
E183q) Bound To The Peripheral Subunit Binding Domain Of
E2
Length = 368
Score = 114 bits (286), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 66/209 (31%), Positives = 107/209 (51%), Gaps = 9/209 (4%)
Query: 6 ESSEERIPCYRVLDDDGQPFPDSSFVKVSEGVAIKMYNDMVTLQTMDTIFYEAQRQGRIS 65
E E+ P +++L+++G+ + + ++S+ ++ MV + +D RQGR+
Sbjct: 14 EKVAEQFPTFQILNEEGEVVNEEAMPELSDEQLKELMRRMVYTRILDQRSISLNRQGRLG 73
Query: 66 FYLTTSGEEXXXXXXXXXXKNDDFVVPQYREPGVLLWRGFSMQEFANQCFGNKADYGKGR 125
FY T+G+E + +DF++P YR+ ++W G + Q F + G
Sbjct: 74 FYAPTAGQEASQIASHFALEKEDFILPGYRDVPQIIWHGLPL----YQAFLFSRGHFHGN 129
Query: 126 QMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAA 185
Q+P N I Q A G A LKM K A A+TY GDGGTS+G+F+
Sbjct: 130 QIP-----EGVNVLPPQIIIGAQYIQAAGVALGLKMRGKKAVAITYTGDGGTSQGNFYQG 184
Query: 186 LNFSAVTEAPVIFICRNNGWAISTPISDQ 214
+NF+ +AP IF+ +NN +AISTP+ Q
Sbjct: 185 INFAGAFKAPAIFVVQNNRFAISTPVEKQ 213
>pdb|1QS0|A Chain A, Crystal Structure Of Pseudomonas Putida 2-Oxoisovalerate
Dehydrogenase (Branched-Chain Alpha-Keto Acid
Dehydrogenase, E1b)
Length = 407
Score = 114 bits (285), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 63/152 (41%), Positives = 78/152 (51%)
Query: 58 AQRQGRISFYLTTSGEEXXXXXXXXXXKNDDFVVPQYREPGVLLWRGFSMQEFANQCFGN 117
AQRQ + SFY + GEE D P YR+ +L R S+ E Q N
Sbjct: 96 AQRQKKXSFYXQSLGEEAIGSGQALALNRTDXCFPTYRQQSILXARDVSLVEXICQLLSN 155
Query: 118 KADYGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGT 177
+ D KGRQ+PI Y + +FT+S +ATQ AVG A A + A + GDG T
Sbjct: 156 ERDPLKGRQLPIXYSVREAGFFTISGNLATQFVQAVGWAXASAIKGDTKIASAWIGDGAT 215
Query: 178 SEGDFHAALNFSAVTEAPVIFICRNNGWAIST 209
+E DFH AL F+ V APVI NN WAIST
Sbjct: 216 AESDFHTALTFAHVYRAPVILNVVNNQWAIST 247
>pdb|3DVA|A Chain A, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DVA|C Chain C, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DVA|E Chain E, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
pdb|3DVA|G Chain G, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate
Dehydrogenase Multi-Enzyme Complex
Length = 369
Score = 114 bits (284), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 66/209 (31%), Positives = 106/209 (50%), Gaps = 9/209 (4%)
Query: 6 ESSEERIPCYRVLDDDGQPFPDSSFVKVSEGVAIKMYNDMVTLQTMDTIFYEAQRQGRIS 65
E E+ P +++L+++G+ + + ++S+ ++ MV + +D RQGR+
Sbjct: 15 EKVAEQFPTFQILNEEGEVVNEEAMPELSDEQLKELMRRMVYTRILDQRSISLNRQGRLG 74
Query: 66 FYLTTSGEEXXXXXXXXXXKNDDFVVPQYREPGVLLWRGFSMQEFANQCFGNKADYGKGR 125
FY T+G+E + +DF++P YR+ ++W G + Q F + G
Sbjct: 75 FYAPTAGQEASQIASHFALEKEDFILPGYRDVPQIIWHGLPL----YQAFLFSRGHFHGN 130
Query: 126 QMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAA 185
Q+P N I Q A G A LKM K A A+TY GDGGTS+GDF+
Sbjct: 131 QIP-----EGVNVLPPQIIIGAQYIQAAGVALGLKMRGKKAVAITYTGDGGTSQGDFYEG 185
Query: 186 LNFSAVTEAPVIFICRNNGWAISTPISDQ 214
+NF+ +AP IF+ +NN +A STP+ Q
Sbjct: 186 INFAGAFKAPAIFVVQNNRFAASTPVEKQ 214
>pdb|3EXH|C Chain C, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXH|G Chain G, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
Length = 382
Score = 68.9 bits (167), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 48/176 (27%), Positives = 79/176 (44%), Gaps = 3/176 (1%)
Query: 38 AIKMYNDMVTLQTMDTIFYEAQRQGRI-SFYLTTSGEEXXXXXXXXXXKNDDFVVPQYRE 96
+K Y M T++ M+ + +Q I F G+E D ++ YR
Sbjct: 53 GLKYYRMMQTVRRMELKADQLYKQKIIRGFCHLCDGQEACCVGLEAGINPTDHLITAYRA 112
Query: 97 PGVLLWRGFSMQEFANQCFGNKADYGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAA 156
G RG S++E + G K KG+ +H + N++ + + Q+P G A
Sbjct: 113 HGFTFTRGLSVREILAELTGRKGGCAKGKGGSMHMYAK--NFYGGNGIVGAQVPLGAGIA 170
Query: 157 YALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPIS 212
A K + KD +T +GDG ++G A N +A+ + P IFIC NN + + T +
Sbjct: 171 LACKYNGKDEVCLTLYGDGAANQGQIFEAYNMAALWKLPCIFICENNRYGMGTAVE 226
>pdb|3EXE|A Chain A, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXE|C Chain C, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXE|E Chain E, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXE|G Chain G, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
Length = 382
Score = 68.6 bits (166), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 48/175 (27%), Positives = 79/175 (45%), Gaps = 3/175 (1%)
Query: 38 AIKMYNDMVTLQTMDTIFYEAQRQGRI-SFYLTTSGEEXXXXXXXXXXKNDDFVVPQYRE 96
+K Y M T++ M+ + +Q I F G+E D ++ YR
Sbjct: 53 GLKYYRMMQTVRRMELKADQLYKQKIIRGFCHLCDGQEACCVGLEAGINPTDHLITAYRA 112
Query: 97 PGVLLWRGFSMQEFANQCFGNKADYGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAA 156
G RG S++E + G K KG+ +H + N++ + + Q+P G A
Sbjct: 113 HGFTFTRGLSVREILAELTGRKGGCAKGKGGSMHMYAK--NFYGGNGIVGAQVPLGAGIA 170
Query: 157 YALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPI 211
A K + KD +T +GDG ++G A N +A+ + P IFIC NN + + T +
Sbjct: 171 LACKYNGKDEVCLTLYGDGAANQGQIFEAYNMAALWKLPCIFICENNRYGMGTSV 225
>pdb|3EXF|A Chain A, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXF|C Chain C, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXF|E Chain E, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXF|G Chain G, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|A Chain A, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|C Chain C, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|E Chain E, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|G Chain G, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|I Chain I, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|K Chain K, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|M Chain M, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|O Chain O, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|Q Chain Q, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|S Chain S, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|U Chain U, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|W Chain W, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|Y Chain Y, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|1 Chain 1, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|3 Chain 3, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXG|5 Chain 5, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXH|A Chain A, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
pdb|3EXH|E Chain E, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex
Length = 382
Score = 68.6 bits (166), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 48/176 (27%), Positives = 79/176 (44%), Gaps = 3/176 (1%)
Query: 38 AIKMYNDMVTLQTMDTIFYEAQRQGRI-SFYLTTSGEEXXXXXXXXXXKNDDFVVPQYRE 96
+K Y M T++ M+ + +Q I F G+E D ++ YR
Sbjct: 53 GLKYYRMMQTVRRMELKADQLYKQKIIRGFCHLCDGQEACCVGLEAGINPTDHLITAYRA 112
Query: 97 PGVLLWRGFSMQEFANQCFGNKADYGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAA 156
G RG S++E + G K KG+ +H + N++ + + Q+P G A
Sbjct: 113 HGFTFTRGLSVREILAELTGRKGGCAKGKGGSMHMYAK--NFYGGNGIVGAQVPLGAGIA 170
Query: 157 YALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPIS 212
A K + KD +T +GDG ++G A N +A+ + P IFIC NN + + T +
Sbjct: 171 LACKYNGKDEVCLTLYGDGAANQGQIFEAYNMAALWKLPCIFICENNRYGMGTAVE 226
>pdb|2OZL|A Chain A, Human Pyruvate Dehydrogenase S264e Variant
pdb|2OZL|C Chain C, Human Pyruvate Dehydrogenase S264e Variant
Length = 365
Score = 68.6 bits (166), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 48/176 (27%), Positives = 79/176 (44%), Gaps = 3/176 (1%)
Query: 38 AIKMYNDMVTLQTMDTIFYEAQRQGRI-SFYLTTSGEEXXXXXXXXXXKNDDFVVPQYRE 96
+K Y M T++ M+ + +Q I F G+E D ++ YR
Sbjct: 36 GLKYYRMMQTVRRMELKADQLYKQKIIRGFCHLCDGQEACCVGLEAGINPTDHLITAYRA 95
Query: 97 PGVLLWRGFSMQEFANQCFGNKADYGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAA 156
G RG S++E + G K KG+ +H + N++ + + Q+P G A
Sbjct: 96 HGFTFTRGLSVREILAELTGRKGGCAKGKGGSMHMYAK--NFYGGNGIVGAQVPLGAGIA 153
Query: 157 YALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPIS 212
A K + KD +T +GDG ++G A N +A+ + P IFIC NN + + T +
Sbjct: 154 LACKYNGKDEVCLTLYGDGAANQGQIFEAYNMAALWKLPCIFICENNRYGMGTSVE 209
>pdb|3EXI|A Chain A, Crystal Structure Of The Pyruvate Dehydrogenase (E1p)
Component Of Human Pyruvate Dehydrogenase Complex With
The Subunit-Binding Domain (Sbd) Of E2p, But Sbd Cannot
Be Modeled Into The Electron Density
Length = 382
Score = 67.4 bits (163), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 47/175 (26%), Positives = 79/175 (45%), Gaps = 3/175 (1%)
Query: 38 AIKMYNDMVTLQTMDTIFYEAQRQGRI-SFYLTTSGEEXXXXXXXXXXKNDDFVVPQYRE 96
+K Y M T++ M+ + +Q I F G+E D ++ +R
Sbjct: 53 GLKYYRMMQTVRRMELKADQLYKQKIIRGFCHLCDGQEACCVGLEAGINPTDHLITAFRA 112
Query: 97 PGVLLWRGFSMQEFANQCFGNKADYGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAA 156
G RG S++E + G K KG+ +H + N++ + + Q+P G A
Sbjct: 113 HGFTFTRGLSVREILAELTGRKGGCAKGKGGSMHMYAK--NFYGGNGIVGAQVPLGAGIA 170
Query: 157 YALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPI 211
A K + KD +T +GDG ++G A N +A+ + P IFIC NN + + T +
Sbjct: 171 LACKYNGKDEVCLTLYGDGAANQGQIFEAYNMAALWKLPCIFICENNRYGMGTSV 225
>pdb|1NI4|A Chain A, Human Pyruvate Dehydrogenase
pdb|1NI4|C Chain C, Human Pyruvate Dehydrogenase
Length = 365
Score = 62.0 bits (149), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 38/124 (30%), Positives = 60/124 (48%), Gaps = 2/124 (1%)
Query: 88 DFVVPQYREPGVLLWRGFSMQEFANQCFGNKADYGKGRQMPIHYGSNKHNYFTVSSTIAT 147
D ++ YR G RG S++E + G K KG+ H + N++ + +
Sbjct: 87 DHLITAYRAHGFTFTRGLSVREILAELTGRKGGCAKGKGGSXHXYAK--NFYGGNGIVGA 144
Query: 148 QLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAI 207
Q+P G A A K + KD +T +GDG ++G A N +A+ + P IFIC NN +
Sbjct: 145 QVPLGAGIALACKYNGKDEVCLTLYGDGAANQGQIFEAYNXAALWKLPCIFICENNRYGX 204
Query: 208 STPI 211
T +
Sbjct: 205 GTSV 208
>pdb|2O1X|A Chain A, 1-deoxy-d-xylulose 5-phosphate Synthase (dxs) From
Deinococcus Radiodurans
pdb|2O1X|B Chain B, 1-deoxy-d-xylulose 5-phosphate Synthase (dxs) From
Deinococcus Radiodurans
pdb|2O1X|C Chain C, 1-deoxy-d-xylulose 5-phosphate Synthase (dxs) From
Deinococcus Radiodurans
pdb|2O1X|D Chain D, 1-deoxy-d-xylulose 5-phosphate Synthase (dxs) From
Deinococcus Radiodurans
Length = 629
Score = 30.0 bits (66), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 34/75 (45%), Gaps = 1/75 (1%)
Query: 134 NKHNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTE 193
++H+ TV +T L +A+G A A KD GDG + G AALN
Sbjct: 115 SEHDAITVGHA-STSLTNALGMALARDAQGKDFHVAAVIGDGSLTGGMALAALNTIGDMG 173
Query: 194 APVIFICRNNGWAIS 208
++ + +N +IS
Sbjct: 174 RKMLIVLNDNEMSIS 188
>pdb|1YR2|A Chain A, Structural And Mechanistic Analysis Of Two Prolyl
Endopeptidases: Role Of Inter-Domain Dynamics In
Catalysis And Specificity
Length = 741
Score = 28.9 bits (63), Expect = 2.5, Method: Composition-based stats.
Identities = 23/70 (32%), Positives = 33/70 (47%), Gaps = 6/70 (8%)
Query: 146 ATQLPHAVGAAYALKMDRKDACAVTYFGDGGTS-----EGDFHAALNFSAVTEAPVIFIC 200
A+ + A A +D K A AV+ G G S GD HA L+FS+ T+ P +
Sbjct: 378 ASYIHDAKSQVLAFDLDGKPAGAVSLPGIGSASGLSGRPGDRHAYLSFSSFTQ-PATVLA 436
Query: 201 RNNGWAISTP 210
+ A +TP
Sbjct: 437 LDPATAKTTP 446
>pdb|3RRX|A Chain A, Crystal Structure Of Q683a Mutant Of
Exo-1,31,4-Beta-Glucanase (Exop) From Pseudoalteromonas
Sp. Bb1
Length = 822
Score = 28.5 bits (62), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 31/75 (41%), Gaps = 15/75 (20%)
Query: 145 IATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEG--------------DFHAALNFSA 190
+ T + VGA + LK + A A + GDGGT G D H+A FSA
Sbjct: 192 MVTGIQGDVGADF-LKGSNRIATAKHFVGDGGTERGVDRGNTLIDEKGLRDIHSAGYFSA 250
Query: 191 VTEAPVIFICRNNGW 205
+ + + N W
Sbjct: 251 INQGVQSVMASFNSW 265
>pdb|3USZ|A Chain A, Crystal Structure Of Truncated Exo-1,31,4-Beta-Glucanase
(Exop) From Pseudoalteromonas Sp. Bb1
pdb|3UT0|A Chain A, Crystal Structure Of Exo-1,31,4-Beta-Glucanase (Exop) From
Pseudoalteromonas Sp. Bb1
pdb|3UT0|B Chain B, Crystal Structure Of Exo-1,31,4-Beta-Glucanase (Exop) From
Pseudoalteromonas Sp. Bb1
pdb|3UT0|C Chain C, Crystal Structure Of Exo-1,31,4-Beta-Glucanase (Exop) From
Pseudoalteromonas Sp. Bb1
pdb|3UT0|D Chain D, Crystal Structure Of Exo-1,31,4-Beta-Glucanase (Exop) From
Pseudoalteromonas Sp. Bb1
Length = 822
Score = 28.5 bits (62), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 31/75 (41%), Gaps = 15/75 (20%)
Query: 145 IATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEG--------------DFHAALNFSA 190
+ T + VGA + LK + A A + GDGGT G D H+A FSA
Sbjct: 192 MVTGIQGDVGADF-LKGSNRIATAKHFVGDGGTERGVDRGNTLIDEKGLRDIHSAGYFSA 250
Query: 191 VTEAPVIFICRNNGW 205
+ + + N W
Sbjct: 251 INQGVQSVMASFNSW 265
>pdb|2CLP|A Chain A, Crystal Structure Of Human Aflatoxin B1 Aldehyde Reductase
Member 3
pdb|2CLP|B Chain B, Crystal Structure Of Human Aflatoxin B1 Aldehyde Reductase
Member 3
pdb|2CLP|C Chain C, Crystal Structure Of Human Aflatoxin B1 Aldehyde Reductase
Member 3
pdb|2CLP|D Chain D, Crystal Structure Of Human Aflatoxin B1 Aldehyde Reductase
Member 3
pdb|2CLP|E Chain E, Crystal Structure Of Human Aflatoxin B1 Aldehyde Reductase
Member 3
pdb|2CLP|F Chain F, Crystal Structure Of Human Aflatoxin B1 Aldehyde Reductase
Member 3
pdb|2CLP|G Chain G, Crystal Structure Of Human Aflatoxin B1 Aldehyde Reductase
Member 3
pdb|2CLP|H Chain H, Crystal Structure Of Human Aflatoxin B1 Aldehyde Reductase
Member 3
pdb|2CLP|I Chain I, Crystal Structure Of Human Aflatoxin B1 Aldehyde Reductase
Member 3
pdb|2CLP|J Chain J, Crystal Structure Of Human Aflatoxin B1 Aldehyde Reductase
Member 3
pdb|2CLP|K Chain K, Crystal Structure Of Human Aflatoxin B1 Aldehyde Reductase
Member 3
Length = 347
Score = 27.7 bits (60), Expect = 5.8, Method: Compositional matrix adjust.
Identities = 12/46 (26%), Positives = 22/46 (47%), Gaps = 6/46 (13%)
Query: 187 NFSAVTEAPVIFICRNNGWAISTPISDQFRSIPS------LPCLSN 226
N++A A + +C++NGW + T + +I PCL +
Sbjct: 160 NYAAWEVAEICTLCKSNGWILPTVYQGMYNAITRQVETELFPCLRH 205
>pdb|1JSC|A Chain A, Crystal Structure Of The Catalytic Subunit Of Yeast
Acetohydroxyacid Synthase: A Target For Herbicidal
Inhibitors
pdb|1JSC|B Chain B, Crystal Structure Of The Catalytic Subunit Of Yeast
Acetohydroxyacid Synthase: A Target For Herbicidal
Inhibitors
Length = 630
Score = 27.3 bits (59), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 24/33 (72%), Gaps = 3/33 (9%)
Query: 23 QPFPDSSFVKVSEGVAIKMYNDMVTLQTMDTIF 55
+P D+SFV ++ G +++N+M++ Q +DT+F
Sbjct: 25 EPDMDTSFVGLTGG---QIFNEMMSRQNVDTVF 54
>pdb|1N0H|A Chain A, Crystal Structure Of Yeast Acetohydroxyacid Synthase In
Complex With A Sulfonylurea Herbicide, Chlorimuron Ethyl
pdb|1N0H|B Chain B, Crystal Structure Of Yeast Acetohydroxyacid Synthase In
Complex With A Sulfonylurea Herbicide, Chlorimuron Ethyl
pdb|1T9A|A Chain A, Crystal Structure Of Yeast Acetohydroxyacid Synthase In
Complex With A Sulfonylurea Herbicide, Tribenuron Methyl
pdb|1T9A|B Chain B, Crystal Structure Of Yeast Acetohydroxyacid Synthase In
Complex With A Sulfonylurea Herbicide, Tribenuron Methyl
pdb|1T9B|A Chain A, Crystal Structure Of Yeast Acetohydroxyacid Synthase In
Complex With A Sulfonylurea Herbicide, Chlorsulfuron
pdb|1T9B|B Chain B, Crystal Structure Of Yeast Acetohydroxyacid Synthase In
Complex With A Sulfonylurea Herbicide, Chlorsulfuron
pdb|1T9C|A Chain A, Crystal Structure Of Yeast Acetohydroxyacid Synthase In
Complex With A Sulfonylurea Herbicide, Sulfometuron
Methyl
pdb|1T9C|B Chain B, Crystal Structure Of Yeast Acetohydroxyacid Synthase In
Complex With A Sulfonylurea Herbicide, Sulfometuron
Methyl
pdb|1T9D|A Chain A, Crystal Structure Of Yeast Acetohydroxyacid Synthase In
Complex With A Sulfonylurea Herbicide, Metsulfuron
Methyl
pdb|1T9D|B Chain B, Crystal Structure Of Yeast Acetohydroxyacid Synthase In
Complex With A Sulfonylurea Herbicide, Metsulfuron
Methyl
pdb|1T9D|C Chain C, Crystal Structure Of Yeast Acetohydroxyacid Synthase In
Complex With A Sulfonylurea Herbicide, Metsulfuron
Methyl
pdb|1T9D|D Chain D, Crystal Structure Of Yeast Acetohydroxyacid Synthase In
Complex With A Sulfonylurea Herbicide, Metsulfuron
Methyl
Length = 677
Score = 27.3 bits (59), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 24/33 (72%), Gaps = 3/33 (9%)
Query: 23 QPFPDSSFVKVSEGVAIKMYNDMVTLQTMDTIF 55
+P D+SFV ++ G +++N+M++ Q +DT+F
Sbjct: 72 EPDMDTSFVGLTGG---QIFNEMMSRQNVDTVF 101
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.136 0.414
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,789,866
Number of Sequences: 62578
Number of extensions: 266561
Number of successful extensions: 492
Number of sequences better than 100.0: 38
Number of HSP's better than 100.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 449
Number of HSP's gapped (non-prelim): 38
length of query: 233
length of database: 14,973,337
effective HSP length: 96
effective length of query: 137
effective length of database: 8,965,849
effective search space: 1228321313
effective search space used: 1228321313
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 50 (23.9 bits)