BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 026778
(233 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q54M22|ODBA_DICDI 2-oxoisovalerate dehydrogenase subunit alpha, mitochondrial
OS=Dictyostelium discoideum GN=bkdA PE=3 SV=1
Length = 441
Score = 244 bits (623), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 112/208 (53%), Positives = 146/208 (70%), Gaps = 6/208 (2%)
Query: 12 IPCYRVLDDDG---QPFPDSSFVKVSEGVAIKMYNDMVTLQTMDTIFYEAQRQGRISFYL 68
IPCY ++D +G +P D +F K IKMY M+TL MD+I Y+ QRQGRISFY+
Sbjct: 64 IPCYTIMDQEGVVSKPDQDPNFSKEE---VIKMYTTMLTLNVMDSILYDVQRQGRISFYM 120
Query: 69 TTSGEEAINIASAAAIKNDDFVVPQYREPGVLLWRGFSMQEFANQCFGNKADYGKGRQMP 128
T+ GEEAI+I SAAA++ D + QYRE GV +WRGF++ + NQC N+ D GKGRQMP
Sbjct: 121 TSFGEEAIHIGSAAALEMSDTIFAQYRETGVFMWRGFTINDIINQCCTNEHDLGKGRQMP 180
Query: 129 IHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNF 188
+H+GS K N T+SS + TQLP AVG++YA K+ + C + YFG+G SEGDFHAA+NF
Sbjct: 181 MHFGSRKINLQTISSPLTTQLPQAVGSSYAQKLAGEKNCTIVYFGEGAASEGDFHAAMNF 240
Query: 189 SAVTEAPVIFICRNNGWAISTPISDQFR 216
+A P IF CRNN WAISTP +Q++
Sbjct: 241 AAALSTPTIFFCRNNKWAISTPSKEQYK 268
>sp|O45924|ODBA_CAEEL 2-oxoisovalerate dehydrogenase subunit alpha, mitochondrial
OS=Caenorhabditis elegans GN=Y39E4A.3 PE=1 SV=2
Length = 431
Score = 238 bits (608), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 109/205 (53%), Positives = 142/205 (69%), Gaps = 1/205 (0%)
Query: 12 IPCYRVLDDDGQPFPDSSFVKVSEGVAIKMYNDMVTLQTMDTIFYEAQRQGRISFYLTTS 71
+P YRV + G S E ++KMY M L MD I Y++QRQGRISFY+T+
Sbjct: 59 LPIYRVTNAVGDVIDKSQDPNFDEQTSLKMYKTMTQLNIMDRILYDSQRQGRISFYMTSF 118
Query: 72 GEEAINIASAAAIKNDDFVVPQYREPGVLLWRGFSMQEFANQCFGNKADYGKGRQMPIHY 131
GEE ++ SAAA++ D + QYRE GVLLWRG++M+ F NQC+GN D GKGRQMP+H+
Sbjct: 119 GEEGNHVGSAAALEPQDLIYGQYREAGVLLWRGYTMENFMNQCYGNADDLGKGRQMPMHF 178
Query: 132 GSNKHNYFTVSSTIATQLPHAVGAAYALKMDR-KDACAVTYFGDGGTSEGDFHAALNFSA 190
G+ + N+ T+SS + TQLP AVG+AYA K + + AV YFGDG SEGD HAA NF+A
Sbjct: 179 GTKERNFVTISSPLTTQLPQAVGSAYAFKQQKDNNRIAVVYFGDGAASEGDAHAAFNFAA 238
Query: 191 VTEAPVIFICRNNGWAISTPISDQF 215
+ P+IF CRNNG+AISTP S+Q+
Sbjct: 239 TLKCPIIFFCRNNGYAISTPTSEQY 263
>sp|P12694|ODBA_HUMAN 2-oxoisovalerate dehydrogenase subunit alpha, mitochondrial OS=Homo
sapiens GN=BCKDHA PE=1 SV=2
Length = 445
Score = 226 bits (577), Expect = 7e-59, Method: Compositional matrix adjust.
Identities = 110/216 (50%), Positives = 144/216 (66%)
Query: 1 MRFISESSEERIPCYRVLDDDGQPFPDSSFVKVSEGVAIKMYNDMVTLQTMDTIFYEAQR 60
+ FI + IP YRV+D GQ S + + +K+Y M L TMD I YE+QR
Sbjct: 65 LEFIQPNVISGIPIYRVMDRQGQIINPSEDPHLPKEKVLKLYKSMTLLNTMDRILYESQR 124
Query: 61 QGRISFYLTTSGEEAINIASAAAIKNDDFVVPQYREPGVLLWRGFSMQEFANQCFGNKAD 120
QGRISFY+T GEE ++ SAAA+ N D V QYRE GVL++R + ++ F QC+GN +D
Sbjct: 125 QGRISFYMTNYGEEGTHVGSAAALDNTDLVFGQYREAGVLMYRDYPLELFMAQCYGNISD 184
Query: 121 YGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEG 180
GKGRQMP+HYG + ++ T+SS +ATQ+P AVGAAYA K + + YFG+G SEG
Sbjct: 185 LGKGRQMPVHYGCKERHFVTISSPLATQIPQAVGAAYAAKRANANRVVICYFGEGAASEG 244
Query: 181 DFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFR 216
D HA NF+A E P+IF CRNNG+AISTP S+Q+R
Sbjct: 245 DAHAGFNFAATLECPIIFFCRNNGYAISTPTSEQYR 280
>sp|A5A6H9|ODBA_PANTR 2-oxoisovalerate dehydrogenase subunit alpha, mitochondrial OS=Pan
troglodytes GN=BCKDHA PE=2 SV=1
Length = 445
Score = 226 bits (577), Expect = 8e-59, Method: Compositional matrix adjust.
Identities = 110/216 (50%), Positives = 144/216 (66%)
Query: 1 MRFISESSEERIPCYRVLDDDGQPFPDSSFVKVSEGVAIKMYNDMVTLQTMDTIFYEAQR 60
+ FI + IP YRV+D GQ S + + +K+Y M L TMD I YE+QR
Sbjct: 65 LEFIQPNVISGIPIYRVMDRQGQIINPSEDPHLPKEKVLKLYKSMTLLNTMDRILYESQR 124
Query: 61 QGRISFYLTTSGEEAINIASAAAIKNDDFVVPQYREPGVLLWRGFSMQEFANQCFGNKAD 120
QGRISFY+T GEE ++ SAAA+ N D V QYRE GVL++R + ++ F QC+GN +D
Sbjct: 125 QGRISFYMTNYGEEGTHVGSAAALDNTDLVFGQYREAGVLMYRDYPLELFMAQCYGNISD 184
Query: 121 YGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEG 180
GKGRQMP+HYG + ++ T+SS +ATQ+P AVGAAYA K + + YFG+G SEG
Sbjct: 185 LGKGRQMPVHYGCKERHFVTISSPLATQIPQAVGAAYAAKRANANRVVICYFGEGAASEG 244
Query: 181 DFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFR 216
D HA NF+A E P+IF CRNNG+AISTP S+Q+R
Sbjct: 245 DAHAGFNFAATLECPIIFFCRNNGYAISTPTSEQYR 280
>sp|Q8HXY4|ODBA_MACFA 2-oxoisovalerate dehydrogenase subunit alpha, mitochondrial
OS=Macaca fascicularis GN=BCKDHA PE=2 SV=1
Length = 445
Score = 226 bits (577), Expect = 8e-59, Method: Compositional matrix adjust.
Identities = 110/216 (50%), Positives = 144/216 (66%)
Query: 1 MRFISESSEERIPCYRVLDDDGQPFPDSSFVKVSEGVAIKMYNDMVTLQTMDTIFYEAQR 60
+ FI + IP YRV+D GQ S + + +K+Y M L TMD I YE+QR
Sbjct: 65 LEFIQPNVISGIPIYRVMDRQGQIINPSEDPHLPKEKVLKLYKSMTLLNTMDRILYESQR 124
Query: 61 QGRISFYLTTSGEEAINIASAAAIKNDDFVVPQYREPGVLLWRGFSMQEFANQCFGNKAD 120
QGRISFY+T GEE ++ SAAA+ N D V QYRE GVL++R + ++ F QC+GN +D
Sbjct: 125 QGRISFYMTNYGEEGTHVGSAAALDNTDLVFGQYREAGVLMYRDYPLELFMAQCYGNISD 184
Query: 121 YGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEG 180
GKGRQMP+HYG + ++ T+SS +ATQ+P AVGAAYA K + + YFG+G SEG
Sbjct: 185 LGKGRQMPVHYGCKERHFVTISSPLATQIPQAVGAAYAAKRANANRVVICYFGEGAASEG 244
Query: 181 DFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFR 216
D HA NF+A E P+IF CRNNG+AISTP S+Q+R
Sbjct: 245 DAHAGFNFAATLECPIIFFCRNNGYAISTPTSEQYR 280
>sp|P11960|ODBA_RAT 2-oxoisovalerate dehydrogenase subunit alpha, mitochondrial
(Fragment) OS=Rattus norvegicus GN=Bckdha PE=1 SV=1
Length = 441
Score = 224 bits (570), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 109/216 (50%), Positives = 144/216 (66%)
Query: 1 MRFISESSEERIPCYRVLDDDGQPFPDSSFVKVSEGVAIKMYNDMVTLQTMDTIFYEAQR 60
+ FI + IP YRV+D GQ S + + +K+Y M L TMD I YE+QR
Sbjct: 61 LEFIQPNVISGIPIYRVMDRQGQIINPSEDPHLPQEEVLKLYRSMTLLNTMDRILYESQR 120
Query: 61 QGRISFYLTTSGEEAINIASAAAIKNDDFVVPQYREPGVLLWRGFSMQEFANQCFGNKAD 120
QGRISFY+T GEE ++ SAAA++ D V QYRE GVL++R + ++ F QC+GN +D
Sbjct: 121 QGRISFYMTNYGEEGTHVGSAAALERTDLVFGQYREAGVLMYRDYPLELFMAQCYGNVSD 180
Query: 121 YGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEG 180
GKGRQMP+HYG + ++ T+SS +ATQ+P AVGAAYA K + + YFG+G SEG
Sbjct: 181 PGKGRQMPVHYGCKERHFVTISSPLATQIPQAVGAAYAAKRANANQIVICYFGEGAASEG 240
Query: 181 DFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFR 216
D HA NF+A E P+IF CRNNG+AISTP S+Q+R
Sbjct: 241 DAHAGFNFAATLECPIIFFCRNNGYAISTPTSEQYR 276
>sp|P11178|ODBA_BOVIN 2-oxoisovalerate dehydrogenase subunit alpha, mitochondrial OS=Bos
taurus GN=BCKDHA PE=2 SV=1
Length = 455
Score = 223 bits (568), Expect = 9e-58, Method: Compositional matrix adjust.
Identities = 109/216 (50%), Positives = 143/216 (66%)
Query: 1 MRFISESSEERIPCYRVLDDDGQPFPDSSFVKVSEGVAIKMYNDMVTLQTMDTIFYEAQR 60
+ FI + IP YRV+D GQ S + + +K Y M L TMD I YE+QR
Sbjct: 75 LEFIQPNVISGIPIYRVMDRQGQIINPSEDPHLPQEKVLKFYKSMTLLNTMDRILYESQR 134
Query: 61 QGRISFYLTTSGEEAINIASAAAIKNDDFVVPQYREPGVLLWRGFSMQEFANQCFGNKAD 120
QGRISFY+T GEE ++ SAAA+ + D V QYRE GVL++R + ++ F QC+GN +D
Sbjct: 135 QGRISFYMTNYGEEGTHVGSAAALDDTDLVFGQYREAGVLMYRDYPLELFMAQCYGNVSD 194
Query: 121 YGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEG 180
GKGRQMP+HYG + ++ T+SS +ATQ+P AVGAAYA K + + YFG+G SEG
Sbjct: 195 LGKGRQMPVHYGCRERHFVTISSPLATQIPQAVGAAYAAKRANANRVVICYFGEGAASEG 254
Query: 181 DFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFR 216
D HA NF+A E P+IF CRNNG+AISTP S+Q+R
Sbjct: 255 DAHAGFNFAATLECPIIFFCRNNGYAISTPTSEQYR 290
>sp|P50136|ODBA_MOUSE 2-oxoisovalerate dehydrogenase subunit alpha, mitochondrial OS=Mus
musculus GN=Bckdha PE=1 SV=1
Length = 442
Score = 221 bits (564), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 108/216 (50%), Positives = 143/216 (66%)
Query: 1 MRFISESSEERIPCYRVLDDDGQPFPDSSFVKVSEGVAIKMYNDMVTLQTMDTIFYEAQR 60
+ FI + IP YRV+D GQ S + + +K Y M L TMD I YE+QR
Sbjct: 62 LEFIQPNVISGIPIYRVMDRQGQIINPSEDPHLPQEEVLKFYRSMTLLNTMDRILYESQR 121
Query: 61 QGRISFYLTTSGEEAINIASAAAIKNDDFVVPQYREPGVLLWRGFSMQEFANQCFGNKAD 120
+GRISFY+T GEE ++ SAAA++ D V QYRE GVL++R + ++ F +QC+GN D
Sbjct: 122 EGRISFYMTNYGEEGTHVGSAAALERTDLVFGQYREAGVLMYRDYPLELFMSQCYGNVND 181
Query: 121 YGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEG 180
GKGRQMP+HYG + ++ T+SS +ATQ+P AVGAAYA K + + YFG+G SEG
Sbjct: 182 PGKGRQMPVHYGCKERHFVTISSPLATQIPQAVGAAYAAKRANANRIVICYFGEGAASEG 241
Query: 181 DFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFR 216
D HA NF+A E P+IF CRNNG+AISTP S+Q+R
Sbjct: 242 DAHAGFNFAATLECPIIFFCRNNGYAISTPTSEQYR 277
>sp|Q72GU1|ODBA_THET2 2-oxoisovalerate dehydrogenase subunit alpha OS=Thermus
thermophilus (strain HB27 / ATCC BAA-163 / DSM 7039)
GN=TT_C1757 PE=3 SV=1
Length = 367
Score = 149 bits (375), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 84/204 (41%), Positives = 119/204 (58%), Gaps = 4/204 (1%)
Query: 16 RVLDDDGQPFPDSSFVKVSEGVAIK-MYNDMVTLQTMDTIFYEAQRQGRISFYLTTSGEE 74
R++ ++G+ D F EG ++ +Y DM+ + +D + R G+ SF +G E
Sbjct: 17 RLIGEEGEWLGD--FPLDLEGEKLRRLYRDMLAARMLDERYTILIRTGKTSFIAPAAGHE 74
Query: 75 AINIASAAAIKND-DFVVPQYREPGVLLWRGFSMQEFANQCFGNKADYGKGRQMPIHYGS 133
A +A A AI+ D+V P YR+ G+ L G ++E Q KAD KGRQMP H GS
Sbjct: 75 AAQVAIAHAIRPGFDWVFPYYRDHGLALALGIPLKELFGQMLATKADPNKGRQMPEHPGS 134
Query: 134 NKHNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTE 193
N+FTV+S IA+ +P A GAA ++K+ R AV FGDG TSEGD++A +NF+AV
Sbjct: 135 KALNFFTVASPIASHVPPAAGAAISMKLLRTGQVAVCTFGDGATSEGDWYAGINFAAVQG 194
Query: 194 APVIFICRNNGWAISTPISDQFRS 217
AP +F+C NN +AIS Q S
Sbjct: 195 APAVFVCENNFYAISVDYRHQTHS 218
>sp|P37940|ODBA_BACSU 2-oxoisovalerate dehydrogenase subunit alpha OS=Bacillus subtilis
(strain 168) GN=bfmBAA PE=1 SV=1
Length = 330
Score = 146 bits (369), Expect = 9e-35, Method: Compositional matrix adjust.
Identities = 73/179 (40%), Positives = 108/179 (60%), Gaps = 2/179 (1%)
Query: 38 AIKMYNDMVTLQTMDTIFYEAQRQGRISFYLTTSGEEAINIASAAAIKND-DFVVPQYRE 96
A+ MY M+ + +D + R G+I F ++ G+EA + +A A+ + D+V+P YR+
Sbjct: 16 AVDMYRTMLLARKIDERMWLLNRSGKIPFVISCQGQEAAQVGAAFALDREMDYVLPYYRD 75
Query: 97 PGVLLWRGFSMQEFANQCFGNKADYGKG-RQMPIHYGSNKHNYFTVSSTIATQLPHAVGA 155
GV+L G + ++ F AD G RQMP H+G K+ T SS + TQ+PHAVG
Sbjct: 76 MGVVLAFGMTAKDLMMSGFAKAADPNSGGRQMPGHFGQKKNRIVTGSSPVTTQVPHAVGI 135
Query: 156 AYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQ 214
A A +M++KD A FG+G +++GDFH NF+AV + PVIF+C NN +AIS P Q
Sbjct: 136 ALAGRMEKKDIAAFVTFGEGSSNQGDFHEGANFAAVHKLPVIFMCENNKYAISVPYDKQ 194
>sp|Q5SLR4|ODBA_THET8 2-oxoisovalerate dehydrogenase subunit alpha OS=Thermus
thermophilus (strain HB8 / ATCC 27634 / DSM 579)
GN=TTHA0229 PE=1 SV=1
Length = 367
Score = 146 bits (369), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 84/204 (41%), Positives = 118/204 (57%), Gaps = 4/204 (1%)
Query: 16 RVLDDDGQPFPDSSFVKVSEGVAIK-MYNDMVTLQTMDTIFYEAQRQGRISFYLTTSGEE 74
R++ ++G+ D F EG ++ +Y DM+ + +D + R G+ SF +G E
Sbjct: 17 RLIGEEGEWLGD--FPLDLEGEKLRRLYRDMLAARMLDERYTILIRTGKTSFIAPAAGHE 74
Query: 75 AINIASAAAIKND-DFVVPQYREPGVLLWRGFSMQEFANQCFGNKADYGKGRQMPIHYGS 133
A +A A AI+ D+V P YR+ G+ L G ++E Q KAD KGRQMP H GS
Sbjct: 75 AAQVAIAHAIRPGFDWVFPYYRDHGLALALGIPLKELLGQMLATKADPNKGRQMPEHPGS 134
Query: 134 NKHNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTE 193
N+FTV+S IA+ +P A GAA ++K+ R AV FGDG TSEGD++A +NF+AV
Sbjct: 135 KALNFFTVASPIASHVPPAAGAAISMKLLRTGQVAVCTFGDGATSEGDWYAGINFAAVQG 194
Query: 194 APVIFICRNNGWAISTPISDQFRS 217
AP +FI NN +AIS Q S
Sbjct: 195 APAVFIAENNFYAISVDYRHQTHS 218
>sp|Q9I1M2|ODBA_PSEAE 2-oxoisovalerate dehydrogenase subunit alpha OS=Pseudomonas
aeruginosa (strain ATCC 15692 / PAO1 / 1C / PRS 101 /
LMG 12228) GN=bkdA1 PE=3 SV=1
Length = 410
Score = 141 bits (355), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 82/207 (39%), Positives = 116/207 (56%), Gaps = 5/207 (2%)
Query: 5 SESSEERIPCYRVLDDDGQPFPDSSFVKVSEGVAIKMYNDMVTLQTMDTIFYEAQRQGRI 64
+E+S+ RVLDDDG + ++S ++ M+ + D AQRQ ++
Sbjct: 45 AETSDLAYSLVRVLDDDGHAVGPWN-PQLSNEQLLRGMRAMLKTRLFDARMLTAQRQKKL 103
Query: 65 SFYLTTSGEEAINIASAAAIKNDDFVVPQYREPGVLLWRGFSMQEFANQCFGNKADYGKG 124
SFY+ GEEAI A A+++ D P YR+ G+L+ R + + + Q N+AD KG
Sbjct: 104 SFYMQCLGEEAIATAHTLALRDGDMCFPTYRQQGILITREYPLVDMICQLLSNEADPLKG 163
Query: 125 RQMPIHYGSNKHNYFTVSSTIATQLPHAVG--AAYALKMDRKDACAVTYFGDGGTSEGDF 182
RQ+PI Y S + +F++S +ATQ AVG A A+K D + A A + GDG T+E DF
Sbjct: 164 RQLPIMYSSKEAGFFSISGNLATQFIQAVGWGMASAIKGDTRIASA--WIGDGATAESDF 221
Query: 183 HAALNFSAVTEAPVIFICRNNGWAIST 209
H AL F+ V APVI NN WAIST
Sbjct: 222 HTALTFAHVYRAPVILNVVNNQWAIST 248
>sp|P09060|ODBA_PSEPU 2-oxoisovalerate dehydrogenase subunit alpha OS=Pseudomonas putida
GN=bkdA1 PE=1 SV=2
Length = 410
Score = 132 bits (331), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 75/197 (38%), Positives = 103/197 (52%), Gaps = 7/197 (3%)
Query: 16 RVLDDDGQ---PFPDSSFVKVSEGVAIKMYNDMVTLQTMDTIFYEAQRQGRISFYLTTSG 72
RVLD+ G P+ + + + + M+ + D+ AQRQ ++SFY+ + G
Sbjct: 56 RVLDEQGDAQGPWAED----IDPQILRQGMRAMLKTRIFDSRMVVAQRQKKMSFYMQSLG 111
Query: 73 EEAINIASAAAIKNDDFVVPQYREPGVLLWRGFSMQEFANQCFGNKADYGKGRQMPIHYG 132
EEAI A A+ D P YR+ +L+ R S+ E Q N+ D KGRQ+PI Y
Sbjct: 112 EEAIGSGQALALNRTDMCFPTYRQQSILMARDVSLVEMICQLLSNERDPLKGRQLPIMYS 171
Query: 133 SNKHNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVT 192
+ +FT+S +ATQ AVG A A + A + GDG T+E DFH AL F+ V
Sbjct: 172 VREAGFFTISGNLATQFVQAVGWAMASAIKGDTKIASAWIGDGATAESDFHTALTFAHVY 231
Query: 193 EAPVIFICRNNGWAIST 209
APVI NN WAIST
Sbjct: 232 RAPVILNVVNNQWAIST 248
>sp|P60090|ODPA_STAAW Pyruvate dehydrogenase E1 component subunit alpha OS=Staphylococcus
aureus (strain MW2) GN=pdhA PE=3 SV=1
Length = 370
Score = 127 bits (320), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 69/207 (33%), Positives = 113/207 (54%), Gaps = 9/207 (4%)
Query: 8 SEERIPCYRVLDDDGQPFPDSSFVKVSEGVAIKMYNDMVTLQTMDTIFYEAQRQGRISFY 67
++ + ++LD++G + +++ +++ MV + +D RQGR+ FY
Sbjct: 18 TQSKFEMVQILDENGNVVNEDLVPDLTDEQLVELMERMVWTRILDQRSISLNRQGRLGFY 77
Query: 68 LTTSGEEAINIASAAAIKNDDFVVPQYREPGVLLWRGFSMQEFANQCFGNKADYGKGRQM 127
T+G+EA +AS A++ +D+++P YR+ ++W G + E F + KG Q
Sbjct: 78 APTAGQEASQLASQYALEKEDYILPGYRDVPQIIWHGLPLTE----AFLFSRGHFKGNQF 133
Query: 128 PIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALN 187
P N + I Q A G A+ALK K+A A+TY GDGG+S+GDF+ +N
Sbjct: 134 P-----EGVNALSPQIIIGAQYIQAAGVAFALKKRGKNAVAITYTGDGGSSQGDFYEGIN 188
Query: 188 FSAVTEAPVIFICRNNGWAISTPISDQ 214
F+A +AP IF+ +NN +AISTP S Q
Sbjct: 189 FAAAYKAPAIFVIQNNNYAISTPRSKQ 215
>sp|Q6GAC1|ODPA_STAAS Pyruvate dehydrogenase E1 component subunit alpha OS=Staphylococcus
aureus (strain MSSA476) GN=pdhA PE=3 SV=1
Length = 370
Score = 127 bits (320), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 69/207 (33%), Positives = 113/207 (54%), Gaps = 9/207 (4%)
Query: 8 SEERIPCYRVLDDDGQPFPDSSFVKVSEGVAIKMYNDMVTLQTMDTIFYEAQRQGRISFY 67
++ + ++LD++G + +++ +++ MV + +D RQGR+ FY
Sbjct: 18 TQSKFEMVQILDENGNVVNEDLVPDLTDEQLVELMERMVWTRILDQRSISLNRQGRLGFY 77
Query: 68 LTTSGEEAINIASAAAIKNDDFVVPQYREPGVLLWRGFSMQEFANQCFGNKADYGKGRQM 127
T+G+EA +AS A++ +D+++P YR+ ++W G + E F + KG Q
Sbjct: 78 APTAGQEASQLASQYALEKEDYILPGYRDVPQIIWHGLPLTE----AFLFSRGHFKGNQF 133
Query: 128 PIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALN 187
P N + I Q A G A+ALK K+A A+TY GDGG+S+GDF+ +N
Sbjct: 134 P-----EGVNALSPQIIIGAQYIQAAGVAFALKKRGKNAVAITYTGDGGSSQGDFYEGIN 188
Query: 188 FSAVTEAPVIFICRNNGWAISTPISDQ 214
F+A +AP IF+ +NN +AISTP S Q
Sbjct: 189 FAAAYKAPAIFVIQNNNYAISTPRSKQ 215
>sp|Q820A6|ODPA_STAAN Pyruvate dehydrogenase E1 component subunit alpha OS=Staphylococcus
aureus (strain N315) GN=pdhA PE=1 SV=1
Length = 370
Score = 127 bits (320), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 69/207 (33%), Positives = 113/207 (54%), Gaps = 9/207 (4%)
Query: 8 SEERIPCYRVLDDDGQPFPDSSFVKVSEGVAIKMYNDMVTLQTMDTIFYEAQRQGRISFY 67
++ + ++LD++G + +++ +++ MV + +D RQGR+ FY
Sbjct: 18 TQSKFEMVQILDENGNVVNEDLVPDLTDEQLVELMERMVWTRILDQRSISLNRQGRLGFY 77
Query: 68 LTTSGEEAINIASAAAIKNDDFVVPQYREPGVLLWRGFSMQEFANQCFGNKADYGKGRQM 127
T+G+EA +AS A++ +D+++P YR+ ++W G + E F + KG Q
Sbjct: 78 APTAGQEASQLASQYALEKEDYILPGYRDVPQIIWHGLPLTE----AFLFSRGHFKGNQF 133
Query: 128 PIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALN 187
P N + I Q A G A+ALK K+A A+TY GDGG+S+GDF+ +N
Sbjct: 134 P-----EGVNALSPQIIIGAQYIQAAGVAFALKKRGKNAVAITYTGDGGSSQGDFYEGIN 188
Query: 188 FSAVTEAPVIFICRNNGWAISTPISDQ 214
F+A +AP IF+ +NN +AISTP S Q
Sbjct: 189 FAAAYKAPAIFVIQNNNYAISTPRSKQ 215
>sp|P60089|ODPA_STAAM Pyruvate dehydrogenase E1 component subunit alpha OS=Staphylococcus
aureus (strain Mu50 / ATCC 700699) GN=pdhA PE=1 SV=1
Length = 370
Score = 127 bits (320), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 69/207 (33%), Positives = 113/207 (54%), Gaps = 9/207 (4%)
Query: 8 SEERIPCYRVLDDDGQPFPDSSFVKVSEGVAIKMYNDMVTLQTMDTIFYEAQRQGRISFY 67
++ + ++LD++G + +++ +++ MV + +D RQGR+ FY
Sbjct: 18 TQSKFEMVQILDENGNVVNEDLVPDLTDEQLVELMERMVWTRILDQRSISLNRQGRLGFY 77
Query: 68 LTTSGEEAINIASAAAIKNDDFVVPQYREPGVLLWRGFSMQEFANQCFGNKADYGKGRQM 127
T+G+EA +AS A++ +D+++P YR+ ++W G + E F + KG Q
Sbjct: 78 APTAGQEASQLASQYALEKEDYILPGYRDVPQIIWHGLPLTE----AFLFSRGHFKGNQF 133
Query: 128 PIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALN 187
P N + I Q A G A+ALK K+A A+TY GDGG+S+GDF+ +N
Sbjct: 134 P-----EGVNALSPQIIIGAQYIQAAGVAFALKKRGKNAVAITYTGDGGSSQGDFYEGIN 188
Query: 188 FSAVTEAPVIFICRNNGWAISTPISDQ 214
F+A +AP IF+ +NN +AISTP S Q
Sbjct: 189 FAAAYKAPAIFVIQNNNYAISTPRSKQ 215
>sp|Q5HGZ1|ODPA_STAAC Pyruvate dehydrogenase E1 component subunit alpha OS=Staphylococcus
aureus (strain COL) GN=pdhA PE=3 SV=1
Length = 370
Score = 127 bits (320), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 69/207 (33%), Positives = 113/207 (54%), Gaps = 9/207 (4%)
Query: 8 SEERIPCYRVLDDDGQPFPDSSFVKVSEGVAIKMYNDMVTLQTMDTIFYEAQRQGRISFY 67
++ + ++LD++G + +++ +++ MV + +D RQGR+ FY
Sbjct: 18 TQSKFEMVQILDENGNVVNEDLVPDLTDEQLVELMERMVWTRILDQRSISLNRQGRLGFY 77
Query: 68 LTTSGEEAINIASAAAIKNDDFVVPQYREPGVLLWRGFSMQEFANQCFGNKADYGKGRQM 127
T+G+EA +AS A++ +D+++P YR+ ++W G + E F + KG Q
Sbjct: 78 APTAGQEASQLASQYALEKEDYILPGYRDVPQIIWHGLPLTE----AFLFSRGHFKGNQF 133
Query: 128 PIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALN 187
P N + I Q A G A+ALK K+A A+TY GDGG+S+GDF+ +N
Sbjct: 134 P-----EGVNALSPQIIIGAQYIQAAGVAFALKKRGKNAVAITYTGDGGSSQGDFYEGIN 188
Query: 188 FSAVTEAPVIFICRNNGWAISTPISDQ 214
F+A +AP IF+ +NN +AISTP S Q
Sbjct: 189 FAAAYKAPAIFVIQNNNYAISTPRSKQ 215
>sp|Q6GHZ2|ODPA_STAAR Pyruvate dehydrogenase E1 component subunit alpha OS=Staphylococcus
aureus (strain MRSA252) GN=pdhA PE=3 SV=1
Length = 370
Score = 126 bits (316), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 68/207 (32%), Positives = 112/207 (54%), Gaps = 9/207 (4%)
Query: 8 SEERIPCYRVLDDDGQPFPDSSFVKVSEGVAIKMYNDMVTLQTMDTIFYEAQRQGRISFY 67
++ + ++LD++G + +++ +++ MV + +D RQGR+ FY
Sbjct: 18 TQSKFEMVQILDENGNVVNEDLVPDLTDEQLVELMERMVWTRILDQRSISLNRQGRLGFY 77
Query: 68 LTTSGEEAINIASAAAIKNDDFVVPQYREPGVLLWRGFSMQEFANQCFGNKADYGKGRQM 127
T+G+EA +AS A++ +D+++P YR+ ++W G + E F + KG Q
Sbjct: 78 APTAGQEASQLASQYALEKEDYILPGYRDVPQIIWHGLPLTE----AFLFSRGHFKGNQF 133
Query: 128 PIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALN 187
P N + I Q G A+ALK K+A A+TY GDGG+S+GDF+ +N
Sbjct: 134 P-----EGVNALSPQIIIGAQYIQTAGVAFALKKRGKNAVAITYTGDGGSSQGDFYEGIN 188
Query: 188 FSAVTEAPVIFICRNNGWAISTPISDQ 214
F+A +AP IF+ +NN +AISTP S Q
Sbjct: 189 FAAAYKAPAIFVIQNNNYAISTPRSKQ 215
>sp|P21873|ODPA_GEOSE Pyruvate dehydrogenase E1 component subunit alpha OS=Geobacillus
stearothermophilus GN=pdhA PE=1 SV=2
Length = 369
Score = 125 bits (315), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 72/209 (34%), Positives = 113/209 (54%), Gaps = 9/209 (4%)
Query: 6 ESSEERIPCYRVLDDDGQPFPDSSFVKVSEGVAIKMYNDMVTLQTMDTIFYEAQRQGRIS 65
E E+ P +++L+++G+ + + ++S+ ++ MV + +D RQGR+
Sbjct: 15 EKVAEQFPTFQILNEEGEVVNEEAMPELSDEQLKELMRRMVYTRILDQRSISLNRQGRLG 74
Query: 66 FYLTTSGEEAINIASAAAIKNDDFVVPQYREPGVLLWRGFSMQEFANQCFGNKADYGKGR 125
FY T+G+EA IAS A++ +DF++P YR+ ++W G + Q F + G
Sbjct: 75 FYAPTAGQEASQIASHFALEKEDFILPGYRDVPQIIWHGLPL----YQAFLFSRGHFHGN 130
Query: 126 QMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAA 185
Q+P N I Q A G A LKM K A A+TY GDGGTS+GDF+
Sbjct: 131 QIP-----EGVNVLPPQIIIGAQYIQAAGVALGLKMRGKKAVAITYTGDGGTSQGDFYEG 185
Query: 186 LNFSAVTEAPVIFICRNNGWAISTPISDQ 214
+NF+ +AP IF+ +NN +AISTP+ Q
Sbjct: 186 INFAGAFKAPAIFVVQNNRFAISTPVEKQ 214
>sp|Q8CPN3|ODPA_STAES Pyruvate dehydrogenase E1 component subunit alpha OS=Staphylococcus
epidermidis (strain ATCC 12228) GN=pdhA PE=3 SV=1
Length = 370
Score = 125 bits (314), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 67/208 (32%), Positives = 112/208 (53%), Gaps = 9/208 (4%)
Query: 7 SSEERIPCYRVLDDDGQPFPDSSFVKVSEGVAIKMYNDMVTLQTMDTIFYEAQRQGRISF 66
++ + ++LD+DG + +++ +++ MV + +D RQGR+ F
Sbjct: 17 ETQSKFEMVQILDEDGNVVNEDLVPDLTDEQLVELMERMVWTRILDQRSISLNRQGRLGF 76
Query: 67 YLTTSGEEAINIASAAAIKNDDFVVPQYREPGVLLWRGFSMQEFANQCFGNKADYGKGRQ 126
Y T+G+EA +AS A++++DF++P YR+ ++W G + + F + KG Q
Sbjct: 77 YAPTAGQEASQLASQYALESEDFILPGYRDVPQIIWHGLPLTD----AFLFSRGHFKGNQ 132
Query: 127 MPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAAL 186
P N + I Q G A+ LK K+A A+TY GDGG+S+GDF+ +
Sbjct: 133 FP-----EGVNALSPQIIIGAQYIQTAGVAFGLKKRGKNAVAITYTGDGGSSQGDFYEGI 187
Query: 187 NFSAVTEAPVIFICRNNGWAISTPISDQ 214
NF++ +AP IF+ +NN +AISTP S Q
Sbjct: 188 NFASAYKAPAIFVIQNNNYAISTPRSKQ 215
>sp|Q5HQ76|ODPA_STAEQ Pyruvate dehydrogenase E1 component subunit alpha OS=Staphylococcus
epidermidis (strain ATCC 35984 / RP62A) GN=pdhA PE=3
SV=1
Length = 370
Score = 125 bits (314), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 67/208 (32%), Positives = 112/208 (53%), Gaps = 9/208 (4%)
Query: 7 SSEERIPCYRVLDDDGQPFPDSSFVKVSEGVAIKMYNDMVTLQTMDTIFYEAQRQGRISF 66
++ + ++LD+DG + +++ +++ MV + +D RQGR+ F
Sbjct: 17 ETQSKFEMVQILDEDGNVVNEDLVPDLTDEQLVELMERMVWTRILDQRSISLNRQGRLGF 76
Query: 67 YLTTSGEEAINIASAAAIKNDDFVVPQYREPGVLLWRGFSMQEFANQCFGNKADYGKGRQ 126
Y T+G+EA +AS A++++DF++P YR+ ++W G + + F + KG Q
Sbjct: 77 YAPTAGQEASQLASQYALESEDFILPGYRDVPQIIWHGLPLTD----AFLFSRGHFKGNQ 132
Query: 127 MPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAAL 186
P N + I Q G A+ LK K+A A+TY GDGG+S+GDF+ +
Sbjct: 133 FP-----EGVNALSPQIIIGAQYIQTAGVAFGLKKRGKNAVAITYTGDGGSSQGDFYEGI 187
Query: 187 NFSAVTEAPVIFICRNNGWAISTPISDQ 214
NF++ +AP IF+ +NN +AISTP S Q
Sbjct: 188 NFASAYKAPAIFVIQNNNYAISTPRSKQ 215
>sp|P21881|ODPA_BACSU Pyruvate dehydrogenase E1 component subunit alpha OS=Bacillus
subtilis (strain 168) GN=pdhA PE=1 SV=3
Length = 371
Score = 125 bits (313), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 67/206 (32%), Positives = 111/206 (53%), Gaps = 9/206 (4%)
Query: 9 EERIPCYRVLDDDGQPFPDSSFVKVSEGVAIKMYNDMVTLQTMDTIFYEAQRQGRISFYL 68
+++ +++L++ G+ +++ +++ ++ MV + +D RQGR+ FY
Sbjct: 20 KKQFETFQILNEKGEVVNEAAMPDLTDDQLKELMRRMVFTRVLDQRSISLNRQGRLGFYA 79
Query: 69 TTSGEEAINIASAAAIKNDDFVVPQYREPGVLLWRGFSMQEFANQCFGNKADYGKGRQMP 128
T+G+EA IA+ A++ +DFV+P YR+ L+W G + Q F + +G QMP
Sbjct: 80 PTAGQEASQIATHFALEKEDFVLPGYRDVPQLIWHGLPL----YQAFLFSRGHFRGNQMP 135
Query: 129 IHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNF 188
+ N + I Q G A LK K A A+TY GDGG S+GDF+ +NF
Sbjct: 136 -----DDVNALSPQIIIGAQYIQTAGVALGLKKRGKKAVAITYTGDGGASQGDFYEGINF 190
Query: 189 SAVTEAPVIFICRNNGWAISTPISDQ 214
+ +AP IF+ +NN +AISTP+ Q
Sbjct: 191 AGAYKAPAIFVVQNNRYAISTPVEKQ 216
>sp|O06161|BKDA_MYCTU 3-methyl-2-oxobutanoate dehydrogenase subunit alpha
OS=Mycobacterium tuberculosis GN=bkdA PE=1 SV=1
Length = 367
Score = 122 bits (307), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 73/195 (37%), Positives = 99/195 (50%), Gaps = 10/195 (5%)
Query: 21 DGQPFPDSSFVK-VSEGVAIKMYNDMVTLQTMDTIFYEAQRQGRISFYLTTSGEEAINIA 79
DG P + + + + E +Y MV + +DT F QRQG ++ Y G+EA +
Sbjct: 26 DGTPTAERRYHRDLPEETLRWLYEMMVVTRELDTEFVNLQRQGELALYTPCRGQEAAQVG 85
Query: 80 SAAAIKNDDFVVPQYREPGVLLWRGFSMQEFANQCFGNKADYGKGRQMPIHYGSNKHNYF 139
+AA ++ D++ PQYRE GV L RG G + G Q
Sbjct: 86 AAACLRKTDWLFPQYRELGVYLVRGIPPGHVGVAWRGT---WHGGLQF------TTKCCA 136
Query: 140 TVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFI 199
+S I TQ HAVGAA A + +D+ V + GDG TSEGD H ALNF+AV P +F
Sbjct: 137 PMSVPIGTQTLHAVGAAMAAQRLDEDSVTVAFLGDGATSEGDVHEALNFAAVFTTPCVFY 196
Query: 200 CRNNGWAISTPISDQ 214
+NN WAIS P+S Q
Sbjct: 197 VQNNQWAISMPVSRQ 211
>sp|Q4MTG0|ODPA_BACCE Pyruvate dehydrogenase E1 component subunit alpha OS=Bacillus
cereus GN=pdhA PE=1 SV=3
Length = 371
Score = 117 bits (292), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 65/199 (32%), Positives = 108/199 (54%), Gaps = 9/199 (4%)
Query: 16 RVLDDDGQPFPDSSFVKVSEGVAIKMYNDMVTLQTMDTIFYEAQRQGRISFYLTTSGEEA 75
++L++ G+ +++ ++S+ ++ MV + +D RQGR+ FY T+G+EA
Sbjct: 27 QILNEKGEVVNEAAMPELSDDQLKELMRRMVYTRVLDQRSISLNRQGRLGFYAPTAGQEA 86
Query: 76 INIASAAAIKNDDFVVPQYREPGVLLWRGFSMQEFANQCFGNKADYGKGRQMPIHYGSNK 135
+AS A++ +DF++P YR+ L+W G + Q F + G QMP +
Sbjct: 87 SQLASHFALEAEDFILPGYRDVPQLVWHGLPL----YQAFLFSRGHFMGNQMPENV---- 138
Query: 136 HNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAP 195
N I Q+ G A +K+ K + A+TY GDGG S+GDF+ +NF+ +AP
Sbjct: 139 -NALAPQIIIGAQIIQTAGVALGMKLRGKKSVAITYTGDGGASQGDFYEGMNFAGAFKAP 197
Query: 196 VIFICRNNGWAISTPISDQ 214
IF+ +NN +AISTP+ Q
Sbjct: 198 AIFVVQNNRYAISTPVEKQ 216
>sp|P35485|ODPA_ACHLA Pyruvate dehydrogenase E1 component subunit alpha (Fragment)
OS=Acholeplasma laidlawii GN=pdhA PE=4 SV=1
Length = 345
Score = 103 bits (256), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 63/193 (32%), Positives = 96/193 (49%), Gaps = 9/193 (4%)
Query: 19 DDDGQPFPDSSFVKVSEGVAIKMYNDMVTLQTMDTIFYEAQRQGRISFYLTTSGEEAINI 78
D +G+ + K+ + +KMY V + D + QRQGR+ Y G+EA I
Sbjct: 1 DQNGKVVNEKMEPKLPKETLLKMYKTAVLGRNADIKALQYQRQGRMLTYAPNMGQEAAQI 60
Query: 79 ASAAAIKNDDFVVPQYREPGVLLWRGFSMQEFANQCFGNKADYGKGRQMPIHYGSNKHNY 138
AAA++ D+ P YRE LL+RG ++ +GN+ K + I
Sbjct: 61 GMAAAMEPQDWNSPMYRELNTLLYRGDKLENVFLYWYGNERGSIKPEGVKI--------- 111
Query: 139 FTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIF 198
+ I +Q A G A A K+ + + GDGGT+ G+F+ LNF+A +APV+
Sbjct: 112 LPTNIIIGSQSNIAAGLAMASKIRKTNEVTAFTIGDGGTAHGEFYEGLNFAASFKAPVVA 171
Query: 199 ICRNNGWAISTPI 211
+ +NN WAISTP+
Sbjct: 172 VIQNNQWAISTPV 184
>sp|P47516|ODPA_MYCGE Pyruvate dehydrogenase E1 component subunit alpha OS=Mycoplasma
genitalium (strain ATCC 33530 / G-37 / NCTC 10195)
GN=pdhA PE=3 SV=1
Length = 358
Score = 97.4 bits (241), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 57/201 (28%), Positives = 100/201 (49%), Gaps = 11/201 (5%)
Query: 11 RIP--CYRVLDDDGQPFPDSSFVKVSEGVAIKMYNDMVTLQTMDTIFYEAQRQGRISFYL 68
++P Y+V D++G+ + + +++ Y M + MD QR G++ +
Sbjct: 8 KVPTTLYQVYDNEGKLIDPNHKITLTDEQLKHAYYLMNLSRMMDKKMLVWQRAGKMLNFA 67
Query: 69 TTSGEEAINIASAAAIKNDDFVVPQYREPGVLLWRGFSMQEFANQCFGNKADYGKGRQMP 128
GEEA+ + + +D+V P +R ++L+RG ++ GN+ KG Q+
Sbjct: 68 PNLGEEALQVGMGLGLNENDWVCPTFRSGALMLYRGVKPEQLLLYWNGNE----KGSQID 123
Query: 129 IHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNF 188
Y + ++ TI Q HA G Y L ++ AVT GDGGT+EG+F+ A+N
Sbjct: 124 AKYKT-----LPINITIGAQYSHAAGLGYMLHYKKQPNVAVTMIGDGGTAEGEFYEAMNI 178
Query: 189 SAVTEAPVIFICRNNGWAIST 209
+++ + +F NN +AIST
Sbjct: 179 ASIHKWNTVFCINNNQFAIST 199
>sp|P52901|ODPA1_ARATH Pyruvate dehydrogenase E1 component subunit alpha-1, mitochondrial
OS=Arabidopsis thaliana GN=E1 ALPHA PE=1 SV=2
Length = 389
Score = 94.4 bits (233), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 51/188 (27%), Positives = 92/188 (48%), Gaps = 7/188 (3%)
Query: 26 PDSSFVKVSEGVAIKMYNDMVTLQTM----DTIFYEAQRQGRISFYLTTSGEEAINIASA 81
P S V+ S + + M ++ M D+++ +G Y G+EA+ I
Sbjct: 47 PPSRSVESSSQELLDFFRTMALMRRMEIAADSLYKAKLIRGFCHLY---DGQEAVAIGME 103
Query: 82 AAIKNDDFVVPQYREPGVLLWRGFSMQEFANQCFGNKADYGKGRQMPIHYGSNKHNYFTV 141
AAI D ++ YR+ + L RG S+ E ++ G +A KG+ +H+ + +++
Sbjct: 104 AAITKKDAIITAYRDHCIFLGRGGSLHEVFSELMGRQAGCSKGKGGSMHFYKKESSFYGG 163
Query: 142 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICR 201
+ Q+P G A+A K ++++A +GDG ++G ALN SA+ + P I +C
Sbjct: 164 HGIVGAQVPLGCGIAFAQKYNKEEAVTFALYGDGAANQGQLFEALNISALWDLPAILVCE 223
Query: 202 NNGWAIST 209
NN + + T
Sbjct: 224 NNHYGMGT 231
>sp|P16387|ODPA_YEAST Pyruvate dehydrogenase E1 component subunit alpha, mitochondrial
OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
GN=PDA1 PE=1 SV=2
Length = 420
Score = 91.7 bits (226), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 58/194 (29%), Positives = 93/194 (47%), Gaps = 16/194 (8%)
Query: 26 PDSSFVKVSEGVAIKMYNDMVTLQTMDTIFYEAQRQGRI-SFYLTTSGEEAINIASAAAI 84
PD S+ + S+ ++MY DMV ++ M+ + +I F + G+EAI + AI
Sbjct: 70 PDLSY-ETSKATLLQMYKDMVIIRRMEMACDALYKAKKIRGFCHLSVGQEAIAVGIENAI 128
Query: 85 KNDDFVVPQYREPGVLLWRGFSMQEFANQCFGNKA--DYGKGRQM----PIHYGSNKHNY 138
D ++ YR G RG S++ + G +A YGKG M P YG N
Sbjct: 129 TKLDSIITSYRCHGFTFMRGASVKAVLAELMGRRAGVSYGKGGSMHLYAPGFYGGN---- 184
Query: 139 FTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIF 198
+ Q+P G A+A + +DAC+ T +GDG +++G + N + + PV+F
Sbjct: 185 ----GIVGAQVPLGAGLAFAHQYKNEDACSFTLYGDGASNQGQVFESFNMAKLWNLPVVF 240
Query: 199 ICRNNGWAISTPIS 212
C NN + + T S
Sbjct: 241 CCENNKYGMGTAAS 254
>sp|P75390|ODPA_MYCPN Pyruvate dehydrogenase E1 component subunit alpha OS=Mycoplasma
pneumoniae (strain ATCC 29342 / M129) GN=pdhA PE=3 SV=1
Length = 358
Score = 88.6 bits (218), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 54/203 (26%), Positives = 97/203 (47%), Gaps = 11/203 (5%)
Query: 9 EERIP--CYRVLDDDGQPFPDSSFVKVSEGVAIKMYNDMVTLQTMDTIFYEAQRQGRISF 66
+ ++P Y+V D++G+ + + +S + M + MD QR G++
Sbjct: 6 KNKVPTTLYQVYDNEGKLMDPNHKITLSNEQLKHAFYLMNLSRIMDKKMLVWQRAGKMLN 65
Query: 67 YLTTSGEEAINIASAAAIKNDDFVVPQYREPGVLLWRGFSMQEFANQCFGNKADYGKGRQ 126
+ GEEA+ + + +D+ P +R ++L+RG ++ GN+ G +
Sbjct: 66 FAPNLGEEALQVGMGMGLNENDWFCPTFRSGALMLYRGVKPEQLLLYWNGNE----NGSK 121
Query: 127 MPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAAL 186
+ Y + ++ TI Q HA G Y L + AVT GDGGT+EG+F+ A+
Sbjct: 122 IEAKYKT-----LPINITIGAQYSHAAGLGYMLHYKKLPNVAVTMIGDGGTAEGEFYEAM 176
Query: 187 NFSAVTEAPVIFICRNNGWAIST 209
N +++ + +F NN +AIST
Sbjct: 177 NIASIHKWNSVFCINNNQFAIST 199
>sp|P52903|ODPA_SOLTU Pyruvate dehydrogenase E1 component subunit alpha, mitochondrial
OS=Solanum tuberosum PE=1 SV=1
Length = 391
Score = 88.6 bits (218), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 47/188 (25%), Positives = 89/188 (47%), Gaps = 7/188 (3%)
Query: 26 PDSSFVKVSEGVAIKMYNDMVTLQTM----DTIFYEAQRQGRISFYLTTSGEEAINIASA 81
P S V+ S + + DM ++ M D+++ +G Y G+EA+ +
Sbjct: 49 PPSRSVETSPKELMTFFKDMTEMRRMEIAADSLYKAKLIRGFCHLY---DGQEAVAVGME 105
Query: 82 AAIKNDDFVVPQYREPGVLLWRGFSMQEFANQCFGNKADYGKGRQMPIHYGSNKHNYFTV 141
AAI D ++ YR+ + L RG ++ E + G + +G+ +H+ + ++
Sbjct: 106 AAITKKDCIITAYRDHCIFLGRGGTLVEAFAELMGRRDGCSRGKGGSMHFYKKESGFYGG 165
Query: 142 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICR 201
+ Q+P +G A+A K ++D +GDG ++G ALN +A+ + P I +C
Sbjct: 166 HGIVGAQVPLGIGLAFAQKYKKEDYVTFAMYGDGAANQGQLFEALNMAALWDLPAILVCE 225
Query: 202 NNGWAIST 209
NN + + T
Sbjct: 226 NNHYGMGT 233
>sp|P52900|ODPA_SMIMA Pyruvate dehydrogenase E1 component subunit alpha, mitochondrial
(Fragment) OS=Sminthopsis macroura GN=PDHA PE=2 SV=1
Length = 363
Score = 88.2 bits (217), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 54/188 (28%), Positives = 89/188 (47%), Gaps = 5/188 (2%)
Query: 26 PDSSFVKVSEGVAIKMYNDMVTLQTMDTIFYEAQRQGRI-SFYLTTSGEEAINIASAAAI 84
P ++ + EG +K Y M T++ M+ + +Q I F G+EA + A I
Sbjct: 24 PTTAVLTREEG--LKYYKIMQTVRRMELKADQLYKQKIIRGFCHLYDGQEACCMGLEAGI 81
Query: 85 KNDDFVVPQYREPGVLLWRGFSMQEFANQCFGNKADYGKGRQMPIHYGSNKHNYFTVSST 144
D V+ YR G RG ++E + G + KG+ +H + N++ +
Sbjct: 82 NPTDHVITAYRAHGFTYTRGLPVREILAELTGRRGGCAKGKGGSMHMYAK--NFYGGNGI 139
Query: 145 IATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNG 204
+ Q+P VG A A K + KD +T +GDG ++G A N +A+ + P IFIC NN
Sbjct: 140 VGAQVPLGVGIALACKYNEKDEICLTLYGDGAANQGQIFEAYNMAALWKLPCIFICENNR 199
Query: 205 WAISTPIS 212
+ + T +
Sbjct: 200 YGMGTSVE 207
>sp|A7MB35|ODPA_BOVIN Pyruvate dehydrogenase E1 component subunit alpha, somatic form,
mitochondrial OS=Bos taurus GN=PDHA1 PE=2 SV=1
Length = 390
Score = 87.0 bits (214), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 50/176 (28%), Positives = 83/176 (47%), Gaps = 3/176 (1%)
Query: 38 AIKMYNDMVTLQTMDTIFYEAQRQGRI-SFYLTTSGEEAINIASAAAIKNDDFVVPQYRE 96
+K Y M T++ M+ + +Q I F G+EA + A I D ++ YR
Sbjct: 61 GLKYYRMMQTVRRMELKADQLYKQKIIRGFCHLCDGQEACCVGLEAGINPTDHLITAYRA 120
Query: 97 PGVLLWRGFSMQEFANQCFGNKADYGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAA 156
G RG S++E + G + KG+ +H + N++ + + Q+P G A
Sbjct: 121 HGFTFTRGLSVREILAELTGRRGGCAKGKGGSMHMYAK--NFYGGNGIVGAQVPLGAGIA 178
Query: 157 YALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPIS 212
A K + KD +T +GDG ++G A N +A+ + P IFIC NN + + T +
Sbjct: 179 LACKYNGKDEVCLTLYGDGAANQGQIFEAYNMAALWKLPCIFICENNRYGMGTSVE 234
>sp|P26268|ODPT_ASCSU Pyruvate dehydrogenase E1 component subunit alpha type II,
mitochondrial (Fragment) OS=Ascaris suum PE=2 SV=1
Length = 391
Score = 85.9 bits (211), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 56/192 (29%), Positives = 98/192 (51%), Gaps = 18/192 (9%)
Query: 26 PDSSFVKVSEGVAIKMYNDMVTLQTMDT----IFYEAQRQGRISFYLTTSGEEAINIASA 81
PD + + V++ A++ Y M T++ M+T ++ E + +G Y SG+EA +
Sbjct: 41 PDVN-MHVTKEDALRYYTQMQTIRRMETAAGNLYKEKKVRGFCHLY---SGQEACAVGMK 96
Query: 82 AAIKNDDFVVPQYREPGVLLWRGFSMQ----EFANQCFGNKADYGKGRQMPIHYGSNKHN 137
AA++ D + YR G G + E + GN YGKG M + YG N
Sbjct: 97 AAMEPGDAAITAYRCHGWTYLSGSPVAKVLCELTGRITGNV--YGKGGSMHM-YG---EN 150
Query: 138 YFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVI 197
++ + + Q P G A+A+K ++ +T FGDG T++G + ++N + + E PV+
Sbjct: 151 FYGGNGIVGAQQPLGTGIAFAMKYKKQKNVCITLFGDGATNQGQLYESMNMAKLWELPVL 210
Query: 198 FICRNNGWAIST 209
++C NNG+ + T
Sbjct: 211 YVCENNGYGMGT 222
>sp|O66112|ODPA_ZYMMO Pyruvate dehydrogenase E1 component subunit alpha OS=Zymomonas
mobilis subsp. mobilis (strain ATCC 31821 / ZM4 / CP4)
GN=pdhA PE=3 SV=1
Length = 354
Score = 85.9 bits (211), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 45/141 (31%), Positives = 73/141 (51%), Gaps = 1/141 (0%)
Query: 72 GEEAINIASAAAIK-NDDFVVPQYREPGVLLWRGFSMQEFANQCFGNKADYGKGRQMPIH 130
G+EA+ + AA++ D V+ YRE G +L G + + G + G+ +H
Sbjct: 74 GQEAVAVGLQAALQPGRDSVITGYREHGHMLAYGIDPKIVMAELTGRASGISHGKGGSMH 133
Query: 131 YGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSA 190
S +H +F + + Q+P G A+A K C+ YFGDG ++G + A N +A
Sbjct: 134 MFSTEHKFFGGNGIVGAQVPLGAGLAFAHKYRNDGGCSAAYFGDGSANQGQVYEAYNMAA 193
Query: 191 VTEAPVIFICRNNGWAISTPI 211
+ + PVIF+ NNG+A+ T I
Sbjct: 194 LWKLPVIFVIENNGYAMGTSI 214
>sp|P26267|ODPA_ASCSU Pyruvate dehydrogenase E1 component subunit alpha type I,
mitochondrial OS=Ascaris suum PE=1 SV=1
Length = 396
Score = 85.9 bits (211), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 55/187 (29%), Positives = 95/187 (50%), Gaps = 17/187 (9%)
Query: 31 VKVSEGVAIKMYNDMVTLQTMDT----IFYEAQRQGRISFYLTTSGEEAINIASAAAIKN 86
V V++ A+ Y M+T++ M++ ++ E + +G Y SG+EA + + AA+
Sbjct: 50 VHVTKEDAVHYYTQMLTIRRMESAAGNLYKEKKVRGFCHLY---SGQEACAVGTKAAMDA 106
Query: 87 DDFVVPQYREPGVLLWRGFSMQ----EFANQCFGNKADYGKGRQMPIHYGSNKHNYFTVS 142
D V YR G G S+ E + GN YGKG M + YG N++ +
Sbjct: 107 GDAAVTAYRCHGWTYLSGSSVAKVLCELTGRITGNV--YGKGGSMHM-YG---ENFYGGN 160
Query: 143 STIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRN 202
+ Q P G A+A+K ++ +T FGDG T++G ++N + + + PV+++C N
Sbjct: 161 GIVGAQQPLGTGIAFAMKYRKEKNVCITMFGDGATNQGQLFESMNMAKLWDLPVLYVCEN 220
Query: 203 NGWAIST 209
NG+ + T
Sbjct: 221 NGYGMGT 227
>sp|O31404|ACOA_BACSU Acetoin:2,6-dichlorophenolindophenol oxidoreductase subunit alpha
OS=Bacillus subtilis (strain 168) GN=acoA PE=2 SV=2
Length = 333
Score = 85.5 bits (210), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 47/181 (25%), Positives = 83/181 (45%), Gaps = 1/181 (0%)
Query: 31 VKVSEGVAIKMYNDMVTLQTMDTIFYEAQRQGRI-SFYLTTSGEEAINIASAAAIKNDDF 89
+ ++E A+ MY M+ ++ + +E QG + F +GEEA+ + A + + D
Sbjct: 9 LSLTEEKALWMYQKMLEIRGFEDKVHELFAQGVLPGFVHLYAGEEAVAVGVCAHLHDGDS 68
Query: 90 VVPQYREPGVLLWRGFSMQEFANQCFGNKADYGKGRQMPIHYGSNKHNYFTVSSTIATQL 149
+ +R G + +G + + FG KG+ +H + +
Sbjct: 69 ITSTHRGHGHCIAKGCDLDGMMAEIFGKATGLCKGKGGSMHIADLDKGMLGANGIVGGGF 128
Query: 150 PHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAIST 209
A G+A K + +V +FGDG ++G FH LN +AV PV+F+ NNG+ +T
Sbjct: 129 TLACGSALTAKYKQTKNVSVCFFGDGANNQGTFHEGLNLAAVWNLPVVFVAENNGYGEAT 188
Query: 210 P 210
P
Sbjct: 189 P 189
>sp|P29803|ODPAT_HUMAN Pyruvate dehydrogenase E1 component subunit alpha, testis-specific
form, mitochondrial OS=Homo sapiens GN=PDHA2 PE=1 SV=1
Length = 388
Score = 85.1 bits (209), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 55/197 (27%), Positives = 92/197 (46%), Gaps = 7/197 (3%)
Query: 14 CYRVLDDDGQPFPDSSFVKVSEGVAIKMYNDMVTLQTMDTIFYEAQRQGRI-SFYLTTSG 72
C L ++G P ++ + +EG +K Y M+T++ M+ + +Q I F G
Sbjct: 39 CDLYLLEEGPPV--TTVLTRAEG--LKYYRMMLTVRRMELKADQLYKQKFIRGFCHLCDG 94
Query: 73 EEAINIASAAAIKNDDFVVPQYREPGVLLWRGFSMQEFANQCFGNKADYGKGRQMPIHYG 132
+EA + A I D V+ YR GV RG S++ + G + KG+ +H
Sbjct: 95 QEACCVGLEAGINPSDHVITSYRAHGVCYTRGLSVRSILAELTGRRGGCAKGKGGSMHMY 154
Query: 133 SNKHNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVT 192
+ N++ + + Q P G A A K D +T +GDG ++G A N +A+
Sbjct: 155 TK--NFYGGNGIVGAQGPLGAGIALACKYKGNDEICLTLYGDGAANQGQIAEAFNMAALW 212
Query: 193 EAPVIFICRNNGWAIST 209
+ P +FIC NN + + T
Sbjct: 213 KLPCVFICENNLYGMGT 229
>sp|P52899|ODPA_CAEEL Probable pyruvate dehydrogenase E1 component subunit alpha,
mitochondrial OS=Caenorhabditis elegans GN=T05H10.6 PE=2
SV=1
Length = 397
Score = 84.3 bits (207), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 60/211 (28%), Positives = 101/211 (47%), Gaps = 17/211 (8%)
Query: 5 SESSEERIPCYRVLDDDGQPFPDSSFVKVSEGVAIKMYNDMVTLQTMDT----IFYEAQR 60
+E S PC D+G P++S V ++ A+K Y DM ++ M++ ++ E +
Sbjct: 26 TEVSFHTKPCKLHKLDNG---PNTS-VTLNREDALKYYRDMQVIRRMESAAGNLYKEKKI 81
Query: 61 QGRISFYLTTSGEEAINIASAAAIKNDDFVVPQYREPGVLLWRGFSMQEFANQCFGNKAD 120
+G Y SG+EA + AA+ D V+ YR G G ++ E + G A
Sbjct: 82 RGFCHLY---SGQEACAVGMKAAMTEGDAVITAYRCHGWTWLLGATVTEVLAELTGRVAG 138
Query: 121 --YGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTS 178
+GKG M ++ N++ + + Q P G A A+K + VT +GDG +
Sbjct: 139 NVHGKGGSMHMY----TKNFYGGNGIVGAQQPLGAGVALAMKYREQKNVCVTLYGDGAAN 194
Query: 179 EGDFHAALNFSAVTEAPVIFICRNNGWAIST 209
+G A N + + + PV+F+C NNG+ + T
Sbjct: 195 QGQLFEATNMAKLWDLPVLFVCENNGFGMGT 225
>sp|O24457|ODPA3_ARATH Pyruvate dehydrogenase E1 component subunit alpha-3, chloroplastic
OS=Arabidopsis thaliana GN=PDH-E1 ALPHA PE=1 SV=1
Length = 428
Score = 84.3 bits (207), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 50/182 (27%), Positives = 91/182 (50%), Gaps = 7/182 (3%)
Query: 33 VSEGVAIKMYNDMVTLQTMDTIFYEAQRQGRI-SFYLTTSGEEAINIASAAAIKNDDFVV 91
+++ +++Y DM+ ++ + + + +G++ F +G+EA++ + D VV
Sbjct: 79 ITKEEGLELYEDMILGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLTKSDSVV 138
Query: 92 PQYREPGVLLWRGFSMQEFANQCFGNKADYGKGRQMPIHYGSNKHNYFTVSSTIATQLPH 151
YR+ L +G S + ++ FG +G+ +H S +HN + I +P
Sbjct: 139 STYRDHVHALSKGVSARAVMSELFGKVTGCCRGQGGSMHMFSKEHNMLGGFAFIGEGIPV 198
Query: 152 AVGAAYALKMDRK------DACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGW 205
A GAA++ K R+ D V +FGDG + G F LN +A+ + P+IF+ NN W
Sbjct: 199 ATGAAFSSKYRREVLKQDCDDVTVAFFGDGTCNNGQFFECLNMAALYKLPIIFVVENNLW 258
Query: 206 AI 207
AI
Sbjct: 259 AI 260
>sp|Q8H1Y0|ODPA2_ARATH Pyruvate dehydrogenase E1 component subunit alpha-2, mitochondrial
OS=Arabidopsis thaliana GN=IAR4 PE=1 SV=2
Length = 393
Score = 84.0 bits (206), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 46/186 (24%), Positives = 86/186 (46%), Gaps = 7/186 (3%)
Query: 28 SSFVKVSEGVAIKMYNDMVTLQTM----DTIFYEAQRQGRISFYLTTSGEEAINIASAAA 83
S V+ S + + DM ++ M D+++ +G Y G+EA+ + AA
Sbjct: 53 SRSVETSSEEILAFFRDMARMRRMEIAADSLYKAKLIRGFCHLY---DGQEALAVGMEAA 109
Query: 84 IKNDDFVVPQYREPGVLLWRGFSMQEFANQCFGNKADYGKGRQMPIHYGSNKHNYFTVSS 143
I D ++ YR+ + RG + + ++ G K G+ +H+ +++
Sbjct: 110 ITKKDAIITSYRDHCTFIGRGGKLVDAFSELMGRKTGCSHGKGGSMHFYKKDASFYGGHG 169
Query: 144 TIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNN 203
+ Q+P G A+A K ++ +A +GDG ++G ALN SA+ + P I +C NN
Sbjct: 170 IVGAQIPLGCGLAFAQKYNKDEAVTFALYGDGAANQGQLFEALNISALWDLPAILVCENN 229
Query: 204 GWAIST 209
+ + T
Sbjct: 230 HYGMGT 235
>sp|Q6Z5N4|ODPA1_ORYSJ Pyruvate dehydrogenase E1 component subunit alpha-1, mitochondrial
OS=Oryza sativa subsp. japonica GN=Os02g0739600 PE=2
SV=1
Length = 390
Score = 83.6 bits (205), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 47/188 (25%), Positives = 85/188 (45%), Gaps = 7/188 (3%)
Query: 26 PDSSFVKVSEGVAIKMYNDMVTLQTM----DTIFYEAQRQGRISFYLTTSGEEAINIASA 81
P S V + + + DM ++ M D+++ +G Y G+EA+ +
Sbjct: 48 PPSRDVTTTPAELLTFFRDMSVMRRMEIAADSLYKAKLIRGFCHLY---DGQEAVAVGME 104
Query: 82 AAIKNDDFVVPQYREPGVLLWRGFSMQEFANQCFGNKADYGKGRQMPIHYGSNKHNYFTV 141
AAI D ++ YR+ L RG + + G +A +G+ +H+ N++
Sbjct: 105 AAITRSDSIITAYRDHCTYLARGGDLVSAFAELMGRQAGCSRGKGGSMHFYKKDANFYGG 164
Query: 142 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICR 201
+ Q+P G A+A K +++ +GDG ++G ALN SA+ + P I +C
Sbjct: 165 HGIVGAQVPLGCGLAFAQKYRKEETATFALYGDGAANQGQLFEALNISALWKLPAILVCE 224
Query: 202 NNGWAIST 209
NN + + T
Sbjct: 225 NNHYGMGT 232
>sp|Q10489|ODPA_SCHPO Pyruvate dehydrogenase E1 component subunit alpha, mitochondrial
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=pda1 PE=1 SV=1
Length = 409
Score = 83.2 bits (204), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 55/224 (24%), Positives = 100/224 (44%), Gaps = 18/224 (8%)
Query: 2 RFISESSEERIPCYRVLDDDGQPFP----DSSF-----------VKVSEGVAIKMYNDMV 46
R ++++ R V ++ +PFP DS F ++V++G + +Y MV
Sbjct: 27 RVTTDATTSRANPAHVPEEHDKPFPVKLDDSVFEGYKIDVPSTEIEVTKGELLGLYEKMV 86
Query: 47 TLQTMDTIFYEAQRQGRISFYLTTS-GEEAINIASAAAIKNDDFVVPQYREPGVLLWRGF 105
T++ ++ + +I + S G+EA+ AI DD ++ YR G RG
Sbjct: 87 TIRRLELACDALYKAKKIRGFCHLSIGQEAVAAGIEGAITLDDSIITSYRCHGFAYTRGL 146
Query: 106 SMQEFANQCFGNKADYGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRKD 165
S++ + G + KG+ +H + N++ + + Q+P G +A K K
Sbjct: 147 SIRSIIGELMGRQCGASKGKGGSMHIFAK--NFYGGNGIVGAQIPLGAGIGFAQKYLEKP 204
Query: 166 ACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAIST 209
+GDG +++G A N + + PVIF C NN + + T
Sbjct: 205 TTTFALYGDGASNQGQAFEAFNMAKLWGLPVIFACENNKYGMGT 248
>sp|P51267|ODPA_PORPU Pyruvate dehydrogenase E1 component subunit alpha OS=Porphyra
purpurea GN=pdhA PE=3 SV=1
Length = 344
Score = 83.2 bits (204), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 50/192 (26%), Positives = 91/192 (47%), Gaps = 8/192 (4%)
Query: 24 PFPDSSFVKVSEGVAIKMYNDMVTLQTMDTIFYEAQRQGRI-SFYLTTSGEEAINIASAA 82
P + + + +++ + +Y DM+ + + + + +G++ F +G+EA++
Sbjct: 10 PLTNCNQINLTKHKLLVLYEDMLLGRNFEDMCAQMYYKGKMFGFVHLYNGQEAVSTGVIK 69
Query: 83 AIKNDDFVVPQYREPGVLLWRGFSMQEFANQCFGNKADYGKGRQMPIHYGSNKHNYFTVS 142
+ + D+V YR+ L +G Q + FG + +GR +H S HN+
Sbjct: 70 LLDSKDYVCSTYRDHVHALSKGVPSQNVMAELFGKETGCSRGRGGSMHIFSAPHNFLGGF 129
Query: 143 STIATQLPHAVGAAY-------ALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAP 195
+ IA +P A GAA+ LK + +FGDG T+ G F LN + + + P
Sbjct: 130 AFIAEGIPVATGAAFQSIYRQQVLKEPGELRVTACFFGDGTTNNGQFFECLNMAVLWKLP 189
Query: 196 VIFICRNNGWAI 207
+IF+ NN WAI
Sbjct: 190 IIFVVENNQWAI 201
>sp|P35486|ODPA_MOUSE Pyruvate dehydrogenase E1 component subunit alpha, somatic form,
mitochondrial OS=Mus musculus GN=Pdha1 PE=1 SV=1
Length = 390
Score = 82.4 bits (202), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 48/175 (27%), Positives = 81/175 (46%), Gaps = 3/175 (1%)
Query: 38 AIKMYNDMVTLQTMDTIFYEAQRQGRI-SFYLTTSGEEAINIASAAAIKNDDFVVPQYRE 96
+K Y M T++ M+ + +Q I F G+EA + A I D ++ YR
Sbjct: 61 GLKYYRMMQTVRRMELKADQLYKQKIIRGFCHLCDGQEACCVGLEAGINPTDHLITAYRA 120
Query: 97 PGVLLWRGFSMQEFANQCFGNKADYGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAA 156
G RG ++ + G + KG+ +H + N++ + + Q+P G A
Sbjct: 121 HGFTFTRGLPVRAILAELTGRRGGCAKGKGGSMHMYAK--NFYGGNGIVGAQVPLGAGIA 178
Query: 157 YALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPI 211
A K + KD +T +GDG ++G A N +A+ + P IFIC NN + + T +
Sbjct: 179 LACKYNGKDEVCLTLYGDGAANQGQIFEAYNMAALWKLPCIFICENNRYGMGTSV 233
>sp|P26284|ODPA_RAT Pyruvate dehydrogenase E1 component subunit alpha, somatic form,
mitochondrial OS=Rattus norvegicus GN=Pdha1 PE=1 SV=2
Length = 390
Score = 82.0 bits (201), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 48/175 (27%), Positives = 82/175 (46%), Gaps = 3/175 (1%)
Query: 38 AIKMYNDMVTLQTMDTIFYEAQRQGRI-SFYLTTSGEEAINIASAAAIKNDDFVVPQYRE 96
+K Y M T++ M+ + +Q I F G+EA + A I D ++ YR
Sbjct: 61 GLKYYRMMQTVRRMELKADQLYKQKIIRGFCHLCDGQEACCVGLEAGINPTDHLITAYRA 120
Query: 97 PGVLLWRGFSMQEFANQCFGNKADYGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAA 156
G RG +++ + G + KG+ +H + N++ + + Q+P G A
Sbjct: 121 HGFTFNRGHAVRAILAELTGRRGGCAKGKGGSMHMYAK--NFYGGNGIVGAQVPLGAGIA 178
Query: 157 YALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPI 211
A K + KD +T +GDG ++G A N +A+ + P IFIC NN + + T +
Sbjct: 179 LACKYNGKDEVCLTLYGDGAANQGQIFEAYNMAALWKLPCIFICENNRYGMGTSV 233
>sp|O13366|ODPA_KLULA Pyruvate dehydrogenase E1 component subunit alpha, mitochondrial
OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 /
DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=PDA1 PE=3
SV=2
Length = 412
Score = 82.0 bits (201), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 65/258 (25%), Positives = 116/258 (44%), Gaps = 39/258 (15%)
Query: 1 MRFISESSEERIPCYRVLDDD--GQPFPDSSF-----------VKVSEGVAIKMYNDMVT 47
+R +S+ ++E P DDD P++SF + ++ ++MY DM+
Sbjct: 27 VRALSQVADETKPG----DDDLVQIDLPETSFEGYLLDVPELSYQTTKSNLLQMYKDMII 82
Query: 48 LQTMDTIFYEAQRQGRI-SFYLTTSGEEAINIASAAAIKNDDFVVPQYREPGVLLWRGFS 106
++ M+ + +I F ++ G+EAI + AI D V+ YR G RG +
Sbjct: 83 VRRMEMACDALYKAKKIRGFCHSSVGQEAIAVGIENAITKRDTVITSYRCHGFTYMRGAA 142
Query: 107 MQEFANQCFGNK--ADYGKGRQM----PIHYGSNKHNYFTVSSTIATQLPHAVGAAYALK 160
+Q + G + +GKG M P YG N + Q+P G A+A +
Sbjct: 143 VQAVLAELMGRRTGVSFGKGGSMHLYAPGFYGGN--------GIVGAQVPLGAGLAFAHQ 194
Query: 161 MDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAI------STPISDQ 214
+DAC+ +GDG +++G + N + + P +F C NN + + S+ +++
Sbjct: 195 YKHEDACSFALYGDGASNQGQVFESFNMAKLWNLPAVFCCENNKYGMGTAAARSSAMTEY 254
Query: 215 FRSIPSLPCLS-NILTIL 231
F+ +P L N + IL
Sbjct: 255 FKRGQYIPGLKVNGMDIL 272
>sp|Q1XDM0|ODPA_PORYE Pyruvate dehydrogenase E1 component subunit alpha OS=Porphyra
yezoensis GN=pdhA PE=3 SV=1
Length = 346
Score = 80.1 bits (196), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 51/192 (26%), Positives = 90/192 (46%), Gaps = 14/192 (7%)
Query: 27 DSSFVKVSEGVAIKMYNDMVTLQTMD----TIFYEAQRQGRISFYLTTSGEEAINIASAA 82
+S+ + +++ + +Y DM+ + + ++Y+ + G + Y +G+EA++
Sbjct: 15 NSTGLNLNKSNLLVLYEDMLLGRNFEDMCAQMYYKGKMFGFVHLY---NGQEAVSTGVIK 71
Query: 83 AIKNDDFVVPQYREPGVLLWRGFSMQEFANQCFGNKADYGKGRQMPIHYGSNKHNYFTVS 142
+ D+V YR+ L +G + + FG + KGR +H S HN+
Sbjct: 72 LLNPTDYVCSTYRDHVHALSKGVPSKNVMAELFGKETGCSKGRGGSMHIFSAPHNFLGGF 131
Query: 143 STIATQLPHAVGAAY-------ALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAP 195
+ IA +P A GAA+ LK +FGDG T+ G F LN + + + P
Sbjct: 132 AFIAEGIPVATGAAFQSIYRQQVLKETEDLRVTACFFGDGTTNNGQFFECLNMAVLWKLP 191
Query: 196 VIFICRNNGWAI 207
+IF+ NN WAI
Sbjct: 192 IIFVVENNQWAI 203
>sp|Q7XTJ3|ODPA3_ORYSJ Pyruvate dehydrogenase E1 component subunit alpha-3, chloroplastic
OS=Oryza sativa subsp. japonica GN=Os04g0119400 PE=2
SV=2
Length = 425
Score = 77.8 bits (190), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 52/185 (28%), Positives = 86/185 (46%), Gaps = 10/185 (5%)
Query: 33 VSEGVAIKMYNDMVTLQTMDTIFYEAQRQGRI-SFYLTTSGEEAINIASAAAIKNDDFVV 91
V+ A+++Y DMV + + + + +G++ F +G+EA++ + D VV
Sbjct: 73 VTREEALELYEDMVLGRIFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLNQADCVV 132
Query: 92 PQYREPGVLLWRGFSMQEFANQCFGNKADYGKGRQMPIHYGSNKHNYFTVSSTIATQLPH 151
YR+ L +G + + FG +G+ +H S HN + I +P
Sbjct: 133 STYRDHVHALSKGVPARSVMAELFGKATGCCRGQGGSMHMFSEPHNLLGGFAFIGEGIPV 192
Query: 152 AVGAAYA-------LKMDRKDACAVT--YFGDGGTSEGDFHAALNFSAVTEAPVIFICRN 202
A GAA+A LK D VT +FGDG + G F LN + + + P++F+ N
Sbjct: 193 ATGAAFAAKYRHEVLKQSSPDGLDVTLAFFGDGTCNNGQFFECLNMAQLWKLPIVFVVEN 252
Query: 203 NGWAI 207
N WAI
Sbjct: 253 NLWAI 257
>sp|Q54C70|ODPA_DICDI Pyruvate dehydrogenase E1 component subunit alpha, mitochondrial
OS=Dictyostelium discoideum GN=pdhA PE=1 SV=1
Length = 377
Score = 77.0 bits (188), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 43/172 (25%), Positives = 83/172 (48%), Gaps = 3/172 (1%)
Query: 39 IKMYNDMVTLQTMDTIFYEAQRQGRI-SFYLTTSGEEAINIASAAAIKNDDFVVPQYREP 97
I + +M + ++T+ ++ I F +G+EA+ +AI DD ++ YR+
Sbjct: 53 ISFFTEMSRFRRLETVCDGLYKKKLIRGFCHLYTGQEAVCAGLESAITKDDHIITAYRDH 112
Query: 98 GVLLWRGFSMQEFANQCFGNKADYGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAY 157
+L RG + +E + + KG+ +H + N++ + + Q P G A+
Sbjct: 113 TYMLSRGATPEEIFAELLMKETGCSKGKGGSMHMFTK--NFYGGNGIVGAQCPLGAGIAF 170
Query: 158 ALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAIST 209
A K ++ + +GDG ++G A N +++ + PVIFIC NN + + T
Sbjct: 171 AQKYNKTGNVCLAMYGDGAANQGQLFEAFNMASLWKLPVIFICENNKYGMGT 222
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.135 0.408
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 86,519,760
Number of Sequences: 539616
Number of extensions: 3488263
Number of successful extensions: 7493
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 206
Number of HSP's successfully gapped in prelim test: 62
Number of HSP's that attempted gapping in prelim test: 7238
Number of HSP's gapped (non-prelim): 272
length of query: 233
length of database: 191,569,459
effective HSP length: 114
effective length of query: 119
effective length of database: 130,053,235
effective search space: 15476334965
effective search space used: 15476334965
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 59 (27.3 bits)