Query 026778
Match_columns 233
No_of_seqs 153 out of 1657
Neff 6.1
Searched_HMMs 46136
Date Fri Mar 29 12:33:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026778.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026778hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG1071 AcoA Pyruvate/2-oxoglu 100.0 1.6E-67 3.5E-72 483.6 20.2 220 13-232 2-228 (358)
2 PLN02269 Pyruvate dehydrogenas 100.0 9.6E-60 2.1E-64 435.6 20.0 202 31-232 25-227 (362)
3 KOG1182 Branched chain alpha-k 100.0 6.2E-60 1.3E-64 422.6 15.7 232 1-232 51-285 (432)
4 CHL00149 odpA pyruvate dehydro 100.0 4.6E-56 1E-60 408.4 19.9 203 30-232 14-226 (341)
5 TIGR03182 PDH_E1_alph_y pyruva 100.0 2.9E-55 6.4E-60 399.1 18.6 198 35-232 1-201 (315)
6 PLN02374 pyruvate dehydrogenas 100.0 3.1E-54 6.8E-59 406.5 20.2 203 30-232 80-292 (433)
7 KOG0225 Pyruvate dehydrogenase 100.0 3.8E-53 8.3E-58 380.9 16.4 202 29-232 52-254 (394)
8 TIGR03181 PDH_E1_alph_x pyruva 100.0 4.9E-52 1.1E-56 381.6 20.5 211 13-232 1-213 (341)
9 cd02000 TPP_E1_PDC_ADC_BCADC T 100.0 4.1E-52 8.9E-57 374.4 17.8 192 41-232 1-195 (293)
10 PF00676 E1_dh: Dehydrogenase 100.0 8.5E-51 1.8E-55 367.7 15.8 190 42-232 1-192 (300)
11 PRK09404 sucA 2-oxoglutarate d 100.0 3.2E-35 6.9E-40 296.9 17.7 193 32-232 185-415 (924)
12 cd02016 TPP_E1_OGDC_like Thiam 100.0 3.1E-34 6.8E-39 255.3 12.5 166 67-232 14-213 (265)
13 PRK12315 1-deoxy-D-xylulose-5- 100.0 3E-30 6.5E-35 251.8 14.5 168 27-212 9-182 (581)
14 TIGR00239 2oxo_dh_E1 2-oxoglut 99.9 1.1E-25 2.4E-30 227.4 16.9 198 31-232 184-416 (929)
15 COG3959 Transketolase, N-termi 99.9 2.6E-22 5.6E-27 173.6 15.4 182 37-227 6-204 (243)
16 TIGR00232 tktlase_bact transke 99.8 1.6E-20 3.4E-25 185.8 14.8 176 46-232 5-211 (653)
17 PRK12754 transketolase; Review 99.8 2.7E-20 5.9E-25 184.2 15.7 174 47-231 10-214 (663)
18 cd02011 TPP_PK Thiamine pyroph 99.8 2.6E-20 5.7E-25 162.7 9.6 145 70-231 1-153 (227)
19 PRK12753 transketolase; Review 99.8 1.2E-19 2.5E-24 179.9 14.7 169 48-227 11-208 (663)
20 cd02007 TPP_DXS Thiamine pyrop 99.8 1.8E-19 4E-24 154.0 12.1 117 86-212 24-144 (195)
21 PLN02790 transketolase 99.8 2.1E-19 4.6E-24 177.9 14.2 156 60-226 13-198 (654)
22 TIGR00204 dxs 1-deoxy-D-xylulo 99.8 1.4E-19 3E-24 178.2 12.6 173 27-215 7-183 (617)
23 PTZ00089 transketolase; Provis 99.8 7.5E-19 1.6E-23 174.1 14.8 169 48-227 13-210 (661)
24 cd02017 TPP_E1_EcPDC_like Thia 99.8 3.5E-18 7.7E-23 159.0 15.1 157 62-227 31-211 (386)
25 PRK05444 1-deoxy-D-xylulose-5- 99.8 1.2E-18 2.7E-23 170.2 12.5 173 25-214 11-189 (580)
26 cd02012 TPP_TK Thiamine pyroph 99.8 4.9E-18 1.1E-22 150.1 13.9 157 60-226 15-189 (255)
27 PF00456 Transketolase_N: Tran 99.7 2.6E-18 5.6E-23 157.9 8.6 170 46-226 6-204 (332)
28 PLN02582 1-deoxy-D-xylulose-5- 99.7 1.5E-17 3.2E-22 164.9 14.4 163 27-205 40-206 (677)
29 PRK05899 transketolase; Review 99.7 1.3E-16 2.7E-21 157.3 15.8 171 45-226 12-211 (624)
30 PRK11864 2-ketoisovalerate fer 99.7 3.8E-17 8.3E-22 148.2 8.9 115 93-210 14-136 (300)
31 PRK12571 1-deoxy-D-xylulose-5- 99.7 4.7E-16 1E-20 153.8 14.3 179 15-212 6-188 (641)
32 TIGR00759 aceE pyruvate dehydr 99.7 1.7E-15 3.7E-20 152.2 15.9 159 62-226 102-281 (885)
33 TIGR03186 AKGDH_not_PDH alpha- 99.7 1.9E-15 4.1E-20 152.9 16.3 158 62-226 102-281 (889)
34 PLN02234 1-deoxy-D-xylulose-5- 99.7 1.3E-15 2.7E-20 150.3 14.4 144 61-217 103-257 (641)
35 KOG0523 Transketolase [Carbohy 99.7 1.6E-15 3.4E-20 146.2 14.5 172 44-224 13-201 (632)
36 PRK13012 2-oxoacid dehydrogena 99.6 4.3E-14 9.3E-19 143.5 15.7 161 62-231 116-302 (896)
37 PF13292 DXP_synthase_N: 1-deo 99.5 1.8E-14 3.8E-19 128.2 7.1 170 27-212 7-180 (270)
38 PRK09405 aceE pyruvate dehydro 99.5 4E-13 8.7E-18 136.2 17.0 183 35-226 77-287 (891)
39 COG1154 Dxs Deoxyxylulose-5-ph 99.5 2.5E-13 5.5E-18 131.6 12.7 171 26-212 10-185 (627)
40 COG0021 TktA Transketolase [Ca 99.5 5.1E-13 1.1E-17 130.1 12.4 172 45-227 10-210 (663)
41 PLN02225 1-deoxy-D-xylulose-5- 99.4 1.4E-12 3.1E-17 129.6 14.2 167 27-210 85-256 (701)
42 PRK05261 putative phosphoketol 99.3 1.7E-11 3.7E-16 123.1 10.8 157 64-227 49-227 (785)
43 cd00568 TPP_enzymes Thiamine p 99.2 3E-11 6.5E-16 98.6 4.7 68 138-211 41-108 (168)
44 cd02002 TPP_BFDC Thiamine pyro 99.0 4.2E-10 9.2E-15 93.6 5.7 62 143-210 49-111 (178)
45 cd02004 TPP_BZL_OCoD_HPCL Thia 99.0 1.8E-09 4E-14 89.6 7.7 67 141-213 46-113 (172)
46 cd02014 TPP_POX Thiamine pyrop 98.8 1.2E-08 2.6E-13 85.4 6.1 63 141-209 49-112 (178)
47 PRK07092 benzoylformate decarb 98.7 2.8E-08 6.1E-13 96.1 7.0 63 140-208 404-467 (530)
48 cd02015 TPP_AHAS Thiamine pyro 98.7 2.9E-08 6.3E-13 83.6 5.8 60 142-207 49-109 (186)
49 cd02008 TPP_IOR_alpha Thiamine 98.7 4.4E-08 9.6E-13 82.1 6.9 63 141-208 49-112 (178)
50 cd02013 TPP_Xsc_like Thiamine 98.7 2.5E-08 5.4E-13 85.0 5.2 62 142-209 52-114 (196)
51 cd02005 TPP_PDC_IPDC Thiamine 98.7 3.4E-08 7.5E-13 83.3 5.4 63 141-209 48-111 (183)
52 cd03372 TPP_ComE Thiamine pyro 98.6 4.6E-08 1E-12 82.4 5.1 62 142-210 41-104 (179)
53 cd02006 TPP_Gcl Thiamine pyrop 98.5 1.4E-07 2.9E-12 80.7 5.5 63 141-209 55-118 (202)
54 PRK08327 acetolactate synthase 98.5 2.2E-07 4.7E-12 90.9 6.9 63 142-208 429-492 (569)
55 TIGR03846 sulfopy_beta sulfopy 98.5 1.5E-07 3.2E-12 79.6 5.0 61 142-209 41-103 (181)
56 cd02003 TPP_IolD Thiamine pyro 98.5 3.5E-07 7.6E-12 78.5 6.9 63 141-209 46-109 (205)
57 PF02775 TPP_enzyme_C: Thiamin 98.5 1.2E-07 2.7E-12 77.1 3.7 64 141-210 26-90 (153)
58 PRK08155 acetolactate synthase 98.5 2.7E-07 5.7E-12 90.0 6.3 62 142-209 418-480 (564)
59 cd02001 TPP_ComE_PpyrDC Thiami 98.4 3.3E-07 7E-12 75.8 5.2 60 142-208 41-102 (157)
60 PRK07524 hypothetical protein; 98.4 2.9E-07 6.3E-12 89.2 5.3 61 142-208 406-467 (535)
61 cd02010 TPP_ALS Thiamine pyrop 98.4 3.6E-07 7.8E-12 76.8 5.0 62 141-208 46-108 (177)
62 PRK12270 kgd alpha-ketoglutara 98.4 1.1E-05 2.5E-10 82.7 15.9 198 30-231 487-719 (1228)
63 PRK06882 acetolactate synthase 98.4 4.5E-07 9.7E-12 88.6 5.7 61 141-207 419-480 (574)
64 cd03371 TPP_PpyrDC Thiamine py 98.4 4.2E-07 9.1E-12 77.3 4.7 61 142-208 47-109 (188)
65 PRK06725 acetolactate synthase 98.4 6.5E-07 1.4E-11 87.7 6.6 61 142-208 421-482 (570)
66 PRK08199 thiamine pyrophosphat 98.3 7.2E-07 1.6E-11 86.9 6.2 60 142-207 414-474 (557)
67 cd02009 TPP_SHCHC_synthase Thi 98.3 3.8E-07 8.3E-12 76.3 3.1 59 143-208 51-110 (175)
68 PRK06163 hypothetical protein; 98.3 8.6E-07 1.9E-11 76.5 5.3 61 142-208 56-118 (202)
69 PRK08266 hypothetical protein; 98.3 9.1E-07 2E-11 85.8 5.8 61 142-208 401-462 (542)
70 PRK07586 hypothetical protein; 98.3 1.1E-06 2.3E-11 84.7 6.0 61 142-208 384-445 (514)
71 PRK07064 hypothetical protein; 98.3 1.3E-06 2.9E-11 84.6 6.5 65 138-208 400-465 (544)
72 PRK08527 acetolactate synthase 98.3 1.3E-06 2.9E-11 85.2 6.4 60 143-208 414-474 (563)
73 PRK12474 hypothetical protein; 98.3 1.4E-06 3.1E-11 84.2 6.5 62 141-208 387-449 (518)
74 PRK07710 acetolactate synthase 98.3 1.3E-06 2.9E-11 85.3 6.1 60 143-208 424-484 (571)
75 PRK11269 glyoxylate carboligas 98.3 1.1E-06 2.4E-11 86.2 5.5 62 141-208 417-479 (591)
76 PRK06546 pyruvate dehydrogenas 98.2 1.7E-06 3.7E-11 84.9 6.0 62 141-208 406-468 (578)
77 PRK06154 hypothetical protein; 98.2 1.6E-06 3.5E-11 84.9 5.5 61 142-208 430-491 (565)
78 TIGR00118 acolac_lg acetolacta 98.2 1.6E-06 3.5E-11 84.4 5.5 60 142-207 411-471 (558)
79 PRK09124 pyruvate dehydrogenas 98.2 2.1E-06 4.5E-11 84.0 6.0 62 141-208 406-468 (574)
80 PRK09107 acetolactate synthase 98.2 2.4E-06 5.2E-11 84.2 6.3 60 143-208 430-490 (595)
81 PRK06965 acetolactate synthase 98.2 3.1E-06 6.7E-11 83.2 6.4 61 142-208 436-497 (587)
82 PRK06112 acetolactate synthase 98.2 4.1E-06 8.8E-11 82.0 7.2 59 143-207 437-496 (578)
83 cd03375 TPP_OGFOR Thiamine pyr 98.2 3.5E-06 7.7E-11 71.8 5.9 61 143-209 51-113 (193)
84 COG3961 Pyruvate decarboxylase 98.2 2.6E-06 5.7E-11 82.1 5.5 73 140-218 408-481 (557)
85 cd03376 TPP_PFOR_porB_like Thi 98.2 1.8E-06 3.9E-11 76.0 4.1 61 141-207 60-122 (235)
86 CHL00099 ilvB acetohydroxyacid 98.2 2.6E-06 5.6E-11 83.7 5.6 61 141-207 428-489 (585)
87 PRK09259 putative oxalyl-CoA d 98.1 3.7E-06 8.1E-11 82.2 6.4 57 141-204 422-478 (569)
88 PRK07979 acetolactate synthase 98.1 3.7E-06 8.1E-11 82.3 6.3 59 143-207 421-480 (574)
89 TIGR01504 glyox_carbo_lig glyo 98.1 2.7E-06 5.8E-11 83.7 5.3 61 142-208 417-478 (588)
90 TIGR03254 oxalate_oxc oxalyl-C 98.1 4.6E-06 9.9E-11 81.3 6.5 57 142-205 416-473 (554)
91 PRK11866 2-oxoacid ferredoxin 98.1 3.9E-06 8.5E-11 75.9 5.6 62 142-209 58-121 (279)
92 TIGR03393 indolpyr_decarb indo 98.1 2.3E-06 5E-11 83.1 4.1 61 142-208 403-464 (539)
93 PLN02573 pyruvate decarboxylas 98.1 2.9E-06 6.4E-11 83.3 4.9 62 142-209 427-489 (578)
94 PRK06466 acetolactate synthase 98.1 3.9E-06 8.5E-11 82.1 5.7 61 142-208 422-483 (574)
95 TIGR02418 acolac_catab acetola 98.1 4.8E-06 1E-10 80.8 5.9 61 142-208 407-468 (539)
96 TIGR03457 sulphoacet_xsc sulfo 98.1 5.5E-06 1.2E-10 81.2 6.1 61 142-208 429-490 (579)
97 PLN02470 acetolactate synthase 98.1 5.8E-06 1.3E-10 81.1 6.2 60 142-207 425-485 (585)
98 PRK06048 acetolactate synthase 98.1 6.1E-06 1.3E-10 80.6 6.3 60 143-208 414-474 (561)
99 PRK11865 pyruvate ferredoxin o 98.1 1.3E-05 2.9E-10 73.1 8.1 71 135-206 61-132 (299)
100 PRK08617 acetolactate synthase 98.1 5.4E-06 1.2E-10 80.6 5.7 61 142-208 413-474 (552)
101 TIGR03394 indol_phenyl_DC indo 98.0 3.9E-06 8.4E-11 81.7 4.4 62 141-209 401-463 (535)
102 PRK11867 2-oxoglutarate ferred 98.0 5.6E-06 1.2E-10 75.0 5.1 111 62-209 14-131 (286)
103 COG2609 AceE Pyruvate dehydrog 98.0 0.00026 5.6E-09 70.7 16.8 73 141-213 190-270 (887)
104 PRK08978 acetolactate synthase 98.0 7E-06 1.5E-10 79.8 6.0 60 143-208 401-461 (548)
105 PRK08979 acetolactate synthase 98.0 9.1E-06 2E-10 79.6 6.7 60 143-208 421-481 (572)
106 PRK07525 sulfoacetaldehyde ace 98.0 6.5E-06 1.4E-10 80.9 5.5 62 141-208 433-495 (588)
107 PRK07418 acetolactate synthase 98.0 7.4E-06 1.6E-10 81.0 5.8 61 142-208 433-494 (616)
108 COG0028 IlvB Thiamine pyrophos 98.0 1.1E-05 2.4E-10 79.1 6.9 65 141-211 406-471 (550)
109 PRK08611 pyruvate oxidase; Pro 98.0 6.9E-06 1.5E-10 80.5 5.3 61 142-208 407-468 (576)
110 PRK05858 hypothetical protein; 98.0 1.2E-05 2.7E-10 78.1 6.8 61 142-208 406-467 (542)
111 TIGR02720 pyruv_oxi_spxB pyruv 98.0 1E-05 2.2E-10 79.3 6.1 61 142-208 407-468 (575)
112 PRK06456 acetolactate synthase 98.0 9.1E-06 2E-10 79.4 5.7 62 142-209 420-482 (572)
113 PRK06457 pyruvate dehydrogenas 98.0 8.2E-06 1.8E-10 79.5 5.4 62 142-208 395-457 (549)
114 cd02018 TPP_PFOR Thiamine pyro 98.0 4.4E-06 9.6E-11 73.6 3.0 66 141-208 62-130 (237)
115 PRK11869 2-oxoacid ferredoxin 98.0 1E-05 2.2E-10 73.2 5.3 111 61-208 3-121 (280)
116 TIGR02177 PorB_KorB 2-oxoacid: 98.0 1.2E-05 2.7E-10 72.9 5.7 60 144-209 54-115 (287)
117 PRK06276 acetolactate synthase 98.0 1.2E-05 2.7E-10 78.9 6.1 60 143-208 419-479 (586)
118 PRK08322 acetolactate synthase 98.0 1.2E-05 2.7E-10 77.9 5.9 61 142-208 405-466 (547)
119 PRK07282 acetolactate synthase 97.9 1.9E-05 4.2E-10 77.3 6.2 61 142-208 417-478 (566)
120 PRK09628 oorB 2-oxoglutarate-a 97.9 2E-05 4.4E-10 71.2 5.6 58 144-207 69-128 (277)
121 PRK05778 2-oxoglutarate ferred 97.9 2.2E-05 4.8E-10 71.7 5.6 113 60-209 12-132 (301)
122 TIGR03336 IOR_alpha indolepyru 97.9 2.9E-05 6.3E-10 76.7 6.8 66 139-209 399-465 (595)
123 PRK07449 2-succinyl-5-enolpyru 97.9 1.1E-05 2.3E-10 78.8 3.6 59 143-208 425-484 (568)
124 PRK07789 acetolactate synthase 97.8 2.8E-05 6.1E-10 76.8 6.5 60 143-208 447-507 (612)
125 PRK08273 thiamine pyrophosphat 97.8 3.1E-05 6.7E-10 76.3 6.5 61 143-208 415-481 (597)
126 TIGR03297 Ppyr-DeCO2ase phosph 97.8 1.9E-05 4.1E-10 73.8 4.3 60 142-207 220-281 (361)
127 KOG1184 Thiamine pyrophosphate 97.8 3.4E-05 7.4E-10 74.5 5.3 67 141-213 413-480 (561)
128 PLN02980 2-oxoglutarate decarb 97.1 0.00064 1.4E-08 74.5 5.3 62 141-209 757-823 (1655)
129 KOG1185 Thiamine pyrophosphate 97.1 0.0011 2.4E-08 64.0 6.1 61 149-211 432-494 (571)
130 KOG0451 Predicted 2-oxoglutara 96.5 0.026 5.7E-07 55.6 11.1 175 31-214 152-372 (913)
131 PF09364 XFP_N: XFP N-terminal 96.3 0.0061 1.3E-07 57.1 5.1 136 65-212 48-209 (379)
132 COG0567 SucA 2-oxoglutarate de 95.6 0.55 1.2E-05 48.7 15.8 177 30-210 169-374 (906)
133 COG1013 PorB Pyruvate:ferredox 95.4 0.061 1.3E-06 49.1 7.7 64 139-208 66-131 (294)
134 COG3960 Glyoxylate carboligase 93.0 0.17 3.7E-06 47.5 5.1 92 107-205 375-475 (592)
135 COG3957 Phosphoketolase [Carbo 92.8 0.11 2.4E-06 52.5 3.9 83 127-213 137-223 (793)
136 COG4231 Indolepyruvate ferredo 91.8 0.19 4.2E-06 50.1 4.1 65 135-205 420-484 (640)
137 KOG4166 Thiamine pyrophosphate 91.6 0.28 6E-06 47.4 4.7 56 143-204 524-579 (675)
138 COG1165 MenD 2-succinyl-6-hydr 91.5 3.4 7.3E-05 41.0 12.2 183 13-229 306-501 (566)
139 cd03377 TPP_PFOR_PNO Thiamine 89.4 2.4 5.2E-05 40.0 9.0 40 167-208 153-194 (365)
140 KOG0450 2-oxoglutarate dehydro 87.0 3.9 8.4E-05 41.9 9.0 176 30-210 243-450 (1017)
141 COG3962 Acetolactate synthase 83.9 1.8 3.9E-05 42.4 4.9 67 143-215 444-511 (617)
142 cd06586 TPP_enzyme_PYR Pyrimid 80.5 4.4 9.6E-05 31.9 5.4 51 152-205 47-97 (154)
143 cd07033 TPP_PYR_DXS_TK_like Py 77.8 5.9 0.00013 32.2 5.5 72 150-232 53-127 (156)
144 PRK13030 2-oxoacid ferredoxin 76.9 3.4 7.3E-05 44.5 4.7 60 141-205 466-525 (1159)
145 PTZ00089 transketolase; Provis 65.0 11 0.00025 38.0 5.2 76 149-232 416-491 (661)
146 PRK09193 indolepyruvate ferred 63.3 10 0.00022 40.9 4.7 65 140-209 478-543 (1165)
147 TIGR00232 tktlase_bact transke 60.1 16 0.00036 36.9 5.3 53 176-232 430-484 (653)
148 PRK11892 pyruvate dehydrogenas 60.1 18 0.00038 35.2 5.4 47 182-232 229-283 (464)
149 TIGR00204 dxs 1-deoxy-D-xylulo 58.2 22 0.00047 35.8 5.8 74 149-232 365-439 (617)
150 cd07034 TPP_PYR_PFOR_IOR-alpha 57.1 21 0.00046 28.6 4.6 49 152-204 53-101 (160)
151 PF01380 SIS: SIS domain SIS d 56.5 30 0.00066 26.1 5.2 40 163-204 52-91 (131)
152 PRK13029 2-oxoacid ferredoxin 52.6 20 0.00043 39.0 4.6 64 141-209 493-557 (1186)
153 PLN02790 transketolase 52.1 28 0.0006 35.3 5.4 49 181-232 431-481 (654)
154 PRK05899 transketolase; Review 51.9 28 0.00062 34.8 5.4 50 180-232 404-455 (624)
155 cd07036 TPP_PYR_E1-PDHc-beta_l 49.3 49 0.0011 27.5 5.7 36 193-232 103-138 (167)
156 PRK12315 1-deoxy-D-xylulose-5- 48.9 38 0.00083 33.7 5.8 73 150-232 334-406 (581)
157 cd07035 TPP_PYR_POX_like Pyrim 48.9 31 0.00067 27.4 4.3 50 152-204 46-96 (155)
158 PLN02683 pyruvate dehydrogenas 48.6 49 0.0011 30.9 6.2 46 182-232 114-168 (356)
159 cd01460 vWA_midasin VWA_Midasi 48.4 57 0.0012 29.4 6.3 37 167-203 166-204 (266)
160 PRK12753 transketolase; Review 48.1 34 0.00074 34.7 5.4 76 148-231 414-489 (663)
161 PRK07119 2-ketoisovalerate fer 47.0 21 0.00047 33.2 3.5 49 148-204 60-108 (352)
162 TIGR01658 EYA-cons_domain eyes 46.3 33 0.00072 31.0 4.4 33 163-202 227-259 (274)
163 cd02991 UAS_ETEA UAS family, E 45.9 16 0.00034 28.6 2.1 55 167-223 52-108 (116)
164 PLN02582 1-deoxy-D-xylulose-5- 45.5 53 0.0012 33.6 6.3 75 152-232 410-485 (677)
165 PRK05444 1-deoxy-D-xylulose-5- 44.8 51 0.0011 32.7 6.0 72 150-232 335-408 (580)
166 PRK12754 transketolase; Review 42.4 50 0.0011 33.7 5.5 76 149-232 415-490 (663)
167 PRK08452 flagellar protein Fla 41.9 25 0.00054 28.3 2.7 40 1-46 73-113 (124)
168 COG2873 MET17 O-acetylhomoseri 41.8 37 0.0008 32.6 4.1 45 47-93 63-107 (426)
169 cd05014 SIS_Kpsf KpsF-like pro 41.2 1.1E+02 0.0023 23.2 6.1 41 162-204 45-85 (128)
170 cd01452 VWA_26S_proteasome_sub 40.9 1E+02 0.0022 26.3 6.4 34 167-200 109-143 (187)
171 cd05008 SIS_GlmS_GlmD_1 SIS (S 39.9 83 0.0018 23.7 5.3 41 162-204 44-84 (126)
172 PF02779 Transket_pyr: Transke 39.7 29 0.00062 28.7 2.9 78 148-232 60-141 (178)
173 PLN02234 1-deoxy-D-xylulose-5- 38.0 77 0.0017 32.3 6.0 75 152-232 411-486 (641)
174 PRK08114 cystathionine beta-ly 37.9 54 0.0012 31.1 4.7 44 48-93 64-107 (395)
175 TIGR02176 pyruv_ox_red pyruvat 37.3 43 0.00093 36.4 4.4 39 167-207 953-993 (1165)
176 TIGR00513 accA acetyl-CoA carb 36.6 46 0.001 30.9 3.9 28 184-211 142-169 (316)
177 cd00198 vWFA Von Willebrand fa 36.5 1.3E+02 0.0029 22.3 6.1 38 164-201 100-139 (161)
178 KOG3107 Predicted haloacid deh 36.2 53 0.0011 31.6 4.2 27 166-199 424-450 (468)
179 cd05710 SIS_1 A subgroup of th 35.9 1E+02 0.0022 23.7 5.2 41 162-204 45-85 (120)
180 cd05009 SIS_GlmS_GlmD_2 SIS (S 35.5 1.6E+02 0.0034 22.8 6.4 39 164-203 61-99 (153)
181 PLN02225 1-deoxy-D-xylulose-5- 35.2 78 0.0017 32.6 5.6 75 152-232 435-510 (701)
182 cd05017 SIS_PGI_PMI_1 The memb 34.8 79 0.0017 24.1 4.5 40 162-203 41-80 (119)
183 cd07037 TPP_PYR_MenD Pyrimidin 34.2 68 0.0015 26.5 4.2 41 161-204 57-97 (162)
184 PRK12319 acetyl-CoA carboxylas 34.1 29 0.00062 31.2 2.1 29 183-211 88-116 (256)
185 PTZ00182 3-methyl-2-oxobutanat 33.8 98 0.0021 28.9 5.7 73 149-232 95-176 (355)
186 COG0674 PorA Pyruvate:ferredox 33.7 46 0.001 31.2 3.5 76 147-232 58-135 (365)
187 PRK12571 1-deoxy-D-xylulose-5- 33.6 1.2E+02 0.0026 30.7 6.6 73 149-232 374-448 (641)
188 PRK09212 pyruvate dehydrogenas 33.5 1.3E+02 0.0028 27.7 6.3 36 193-232 110-145 (327)
189 cd07039 TPP_PYR_POX Pyrimidine 32.8 89 0.0019 25.6 4.7 42 161-205 60-101 (164)
190 PF03646 FlaG: FlaG protein; 32.4 12 0.00026 28.5 -0.5 32 10-46 65-97 (107)
191 smart00594 UAS UAS domain. 32.3 58 0.0013 25.1 3.4 36 167-204 62-97 (122)
192 PRK11658 UDP-4-amino-4-deoxy-L 32.2 1.9E+02 0.0042 26.6 7.4 61 30-92 9-78 (379)
193 cd01450 vWFA_subfamily_ECM Von 31.7 1.7E+02 0.0036 22.4 6.0 39 164-202 102-141 (161)
194 cd01467 vWA_BatA_type VWA BatA 31.3 2E+02 0.0044 22.9 6.6 36 166-201 103-140 (180)
195 PRK06702 O-acetylhomoserine am 31.1 80 0.0017 30.3 4.7 45 47-93 62-106 (432)
196 cd05007 SIS_Etherase N-acetylm 31.0 1.1E+02 0.0023 27.2 5.3 40 163-204 117-156 (257)
197 smart00861 Transket_pyr Transk 30.8 1E+02 0.0022 24.9 4.8 70 151-231 64-135 (168)
198 PF05014 Nuc_deoxyrib_tr: Nucl 30.8 1.3E+02 0.0028 22.7 5.1 41 164-205 61-101 (113)
199 COG3958 Transketolase, C-termi 30.3 49 0.0011 30.6 2.9 66 148-220 61-127 (312)
200 PF02639 DUF188: Uncharacteriz 29.9 46 0.00099 26.8 2.4 25 184-208 1-25 (130)
201 cd01461 vWA_interalpha_trypsin 29.8 1.5E+02 0.0032 23.3 5.4 36 165-200 99-135 (171)
202 PF00205 TPP_enzyme_M: Thiamin 29.4 25 0.00055 27.4 0.9 31 167-197 13-43 (137)
203 COG1334 FlaG Uncharacterized f 29.4 69 0.0015 25.7 3.3 37 6-46 73-109 (120)
204 cd02958 UAS UAS family; UAS is 29.3 64 0.0014 24.3 3.1 27 179-205 3-29 (114)
205 TIGR00315 cdhB CO dehydrogenas 29.2 80 0.0017 26.4 3.9 36 166-201 28-63 (162)
206 PF01745 IPT: Isopentenyl tran 28.7 70 0.0015 28.5 3.6 58 169-232 4-61 (233)
207 PF02844 GARS_N: Phosphoribosy 28.7 2E+02 0.0044 22.1 5.8 46 154-199 12-68 (100)
208 PF08806 Sep15_SelM: Sep15/Sel 28.6 33 0.00071 25.2 1.3 33 12-44 42-74 (78)
209 PF10087 DUF2325: Uncharacteri 28.5 1.6E+02 0.0035 21.7 5.2 33 165-199 49-81 (97)
210 PF12637 TSCPD: TSCPD domain; 27.3 1.5E+02 0.0032 22.3 4.7 46 98-159 48-93 (95)
211 TIGR03845 sulfopyru_alph sulfo 27.3 1.8E+02 0.0039 23.8 5.7 33 165-200 58-91 (157)
212 PRK11337 DNA-binding transcrip 27.2 1.8E+02 0.0039 25.7 6.1 43 160-204 183-225 (292)
213 cd01453 vWA_transcription_fact 27.1 2E+02 0.0044 23.8 6.0 34 166-199 108-142 (183)
214 PRK13936 phosphoheptose isomer 26.5 2.1E+02 0.0046 24.1 6.1 42 161-204 108-149 (197)
215 PF04122 CW_binding_2: Putativ 26.0 2.1E+02 0.0045 20.7 5.3 43 155-200 13-57 (92)
216 COG5123 TOA2 Transcription ini 25.8 1E+02 0.0022 24.1 3.5 29 38-66 4-32 (113)
217 PRK08659 2-oxoglutarate ferred 25.7 1.2E+02 0.0027 28.5 4.9 100 70-204 7-108 (376)
218 PF13519 VWA_2: von Willebrand 25.7 98 0.0021 23.9 3.7 35 165-200 99-133 (172)
219 TIGR02442 Cob-chelat-sub cobal 25.5 1.7E+02 0.0038 29.4 6.2 56 145-200 537-607 (633)
220 TIGR00441 gmhA phosphoheptose 25.4 1.9E+02 0.0041 23.2 5.4 41 162-204 77-117 (154)
221 cd01462 VWA_YIEM_type VWA YIEM 25.2 2.2E+02 0.0048 22.1 5.7 34 166-199 95-130 (152)
222 PF00185 OTCace: Aspartate/orn 24.4 1.2E+02 0.0027 24.7 4.1 34 165-200 1-34 (158)
223 KOG1615 Phosphoserine phosphat 24.1 65 0.0014 28.3 2.5 77 93-184 113-191 (227)
224 PLN03230 acetyl-coenzyme A car 24.0 92 0.002 30.2 3.7 42 183-224 211-252 (431)
225 PRK00414 gmhA phosphoheptose i 24.0 2.5E+02 0.0055 23.6 6.1 41 162-204 109-149 (192)
226 cd04918 ACT_AK1-AT_2 ACT domai 23.5 2.4E+02 0.0052 19.0 5.2 35 167-201 2-36 (65)
227 COG2008 GLY1 Threonine aldolas 23.1 1.4E+02 0.0031 28.0 4.7 51 46-98 35-85 (342)
228 PRK13938 phosphoheptose isomer 23.1 2.5E+02 0.0053 24.0 5.9 43 160-204 109-151 (196)
229 PRK10886 DnaA initiator-associ 22.9 1.9E+02 0.0041 24.7 5.1 40 163-204 108-147 (196)
230 PF10609 ParA: ParA/MinD ATPas 22.6 1.7E+02 0.0036 21.8 4.1 44 164-208 25-68 (81)
231 KOG3445 Mitochondrial/chloropl 22.2 2E+02 0.0044 23.7 4.8 38 165-202 24-64 (145)
232 cd01451 vWA_Magnesium_chelatas 22.2 2.7E+02 0.0059 22.5 5.8 35 166-200 99-139 (178)
233 smart00327 VWA von Willebrand 21.9 3.5E+02 0.0076 20.8 6.3 38 166-203 106-144 (177)
234 cd02004 TPP_BZL_OCoD_HPCL Thia 21.5 50 0.0011 26.8 1.3 14 164-177 92-105 (172)
235 cd07038 TPP_PYR_PDC_IPDC_like 21.4 1.7E+02 0.0037 23.8 4.5 48 150-204 49-96 (162)
236 PRK08266 hypothetical protein; 21.3 1.5E+02 0.0033 28.8 4.7 47 152-201 55-102 (542)
237 TIGR00168 infC translation ini 21.0 1.8E+02 0.0038 24.4 4.4 33 7-44 2-34 (165)
238 PRK13034 serine hydroxymethylt 21.0 1.8E+02 0.0039 27.4 5.0 52 47-99 71-126 (416)
239 PRK07524 hypothetical protein; 20.9 1.6E+02 0.0034 28.6 4.8 49 152-203 51-100 (535)
240 KOG1257 NADP+-dependent malic 20.8 2.1E+02 0.0045 28.7 5.5 88 143-230 285-381 (582)
241 PRK00124 hypothetical protein; 20.8 1.4E+02 0.0031 24.8 3.8 31 173-206 7-37 (151)
242 cd00617 Tnase_like Tryptophana 20.7 1.4E+02 0.003 28.7 4.2 43 47-91 54-96 (431)
243 cd04469 S1_Hex1 S1_Hex1: Hex1, 20.7 1.1E+02 0.0025 22.4 2.8 48 13-76 13-64 (75)
244 PRK07064 hypothetical protein; 20.5 1.7E+02 0.0037 28.3 4.9 45 152-202 57-101 (544)
245 PRK00945 acetyl-CoA decarbonyl 20.4 1.4E+02 0.0031 25.1 3.8 36 166-201 35-71 (171)
246 PRK05441 murQ N-acetylmuramic 20.1 2.2E+02 0.0048 25.9 5.2 40 163-204 130-169 (299)
No 1
>COG1071 AcoA Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, alpha subunit [Energy production and conversion]
Probab=100.00 E-value=1.6e-67 Score=483.61 Aligned_cols=220 Identities=36% Similarity=0.592 Sum_probs=209.3
Q ss_pred CeeEEeCCCCCCCCCCCCC--CCCHHHHHHHHHHHHHHhHHHHHHHHHHhcCccc-ccccCcchHHHHHHHHhccCCC-C
Q 026778 13 PCYRVLDDDGQPFPDSSFV--KVSEGVAIKMYNDMVTLQTMDTIFYEAQRQGRIS-FYLTTSGEEAINIASAAAIKND-D 88 (233)
Q Consensus 13 ~~~~vl~~~g~~~~~~~~~--~~s~e~l~~lyr~M~~~R~~d~~~~~l~r~G~i~-~~~~~~GqEa~~vg~~~aL~~~-D 88 (233)
+.+++++++|+.+.+.... .+++++|+++||+|+++|.||+++.+++|+|+++ |+|++.||||++||++++|+++ |
T Consensus 2 ~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~y~~M~l~R~fd~k~~~l~r~G~i~gf~~~~~GqEA~~vg~~~aL~~~~D 81 (358)
T COG1071 2 SLIRVLDEDGRAVDELPGPNAALSKEELLELYRLMLLIRRFDEKMLQLQRQGKIGGFYHLYIGQEAVQVGAAAALRPGED 81 (358)
T ss_pred CceeccCcccccccccccccccCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCcCCcccHHHHHHHHHHhcCCCCC
Confidence 6789999999998875444 6899999999999999999999999999999996 9999999999999999999966 9
Q ss_pred eEecCCccchhhhhcCCCHHHHHHHHhcCCCCCCCCCCCCcccCCCccccccccccCCCCchhhhHHHHHhhhcCCCC-e
Q 026778 89 FVVPQYREPGVLLWRGFSMQEFANQCFGNKADYGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRKDA-C 167 (233)
Q Consensus 89 ~~~~~yR~~~~~l~rG~~~~~~l~e~~g~~~g~~~Gr~~~~H~~~~~~~~~~~~g~lG~~~~~A~G~A~a~k~~~~~~-v 167 (233)
|++|+||+|+++|++|+|+.++|++++|+++|+|+||+||+|++++++|+++.+++||+|+|+|+|+|+|.|+++++. |
T Consensus 82 ~i~~~YR~h~~~l~~G~~~~~~~a~~~G~~~g~~kGr~~~~h~~~~~~~~~~~~~iVg~Q~~~AaG~A~a~k~~~~~~~V 161 (358)
T COG1071 82 WIFPTYRDHGHLLARGVPLKEIMAELLGKATGPCKGRGGSMHYSDKEKGFLGGSGIVGTQIPLAAGAALALKYRGTKDGV 161 (358)
T ss_pred EeecccCccccceecCCCHHHHHHHHhccccCCCCCCCCcccccccccccCCCCceecccccHHHHHHHHHHHhCCCCcE
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999555 9
Q ss_pred EEEEEcCCccchhhHHHHHHHHHHcCCCEEEEEecCCccccccccccccCCCchhhhc--ccccccc
Q 026778 168 AVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSIPSLPCLS--NILTILL 232 (233)
Q Consensus 168 vv~~~GDG~~~~G~~~Ealn~A~~~~lPvvfvv~nN~~ais~~~~~q~~~~~~~~~~~--~~~~~~~ 232 (233)
++||+|||++|||+|||+||||++|+|||||+||||+|+||+|.+.|+..+.++.|-. ++|+++|
T Consensus 162 a~~~~GDGat~qG~FhEalN~A~v~klPvvf~ieNN~yAiSvp~~~q~~~~~~~~ra~aygipgv~V 228 (358)
T COG1071 162 AVAFFGDGATNQGDFHEALNFAAVWKLPVVFVIENNQYAISVPRSRQTAAEIIAARAAAYGIPGVRV 228 (358)
T ss_pred EEEEecCCccccchHHHHHHHHHHhcCCEEEEEecCCceeecchhhcccchhHHhhhhccCCCeEEE
Confidence 9999999999999999999999999999999999999999999999998888886666 8899876
No 2
>PLN02269 Pyruvate dehydrogenase E1 component subunit alpha
Probab=100.00 E-value=9.6e-60 Score=435.63 Aligned_cols=202 Identities=24% Similarity=0.430 Sum_probs=196.4
Q ss_pred CCCCHHHHHHHHHHHHHHhHHHHHHHHHHhcCcc-cccccCcchHHHHHHHHhccCCCCeEecCCccchhhhhcCCCHHH
Q 026778 31 VKVSEGVAIKMYNDMVTLQTMDTIFYEAQRQGRI-SFYLTTSGEEAINIASAAAIKNDDFVVPQYREPGVLLWRGFSMQE 109 (233)
Q Consensus 31 ~~~s~e~l~~lyr~M~~~R~~d~~~~~l~r~G~i-~~~~~~~GqEa~~vg~~~aL~~~D~~~~~yR~~~~~l~rG~~~~~ 109 (233)
+.+++|+++++||.|+++|.||+++.+++++|++ +|+|++.||||++||++++|+++||+||+||+|+++|+||+|+.+
T Consensus 25 ~~~~~~~ll~~yr~M~~~R~~e~~~~~l~~~g~i~g~~~~~~GqEA~~vg~~~aL~~~D~~~~~yR~hg~~la~G~~~~~ 104 (362)
T PLN02269 25 VETSKQELVDFFRDMYLMRRMEIAADSLYKAKLIRGFCHLYDGQEAVAVGMEAAITKEDAIITAYRDHCTHLGRGGTVLE 104 (362)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccCCCCChHHHHHHHHHhcCCCCEEEechhhHHHHHHcCCCHHH
Confidence 4689999999999999999999999999999999 699999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCCCCCCCCCCcccCCCccccccccccCCCCchhhhHHHHHhhhcCCCCeEEEEEcCCccchhhHHHHHHHH
Q 026778 110 FANQCFGNKADYGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFS 189 (233)
Q Consensus 110 ~l~e~~g~~~g~~~Gr~~~~H~~~~~~~~~~~~g~lG~~~~~A~G~A~a~k~~~~~~vvv~~~GDG~~~~G~~~Ealn~A 189 (233)
+|+|+||+++|+|+||+||||+++++.|+++.+++||+++|+|+|+|+|.|+++++.+++|++|||+++||.||||||+|
T Consensus 105 ~~ae~~g~~~g~~~GrggsmH~~~~~~~~~~~~~~vG~~~p~A~G~A~A~k~~~~~~v~v~~~GDGa~~eG~~~Ealn~A 184 (362)
T PLN02269 105 VFAELMGRKDGCSRGKGGSMHFYKKDANFYGGHGIVGAQVPLGAGLAFAQKYNKEENVAFALYGDGAANQGQLFEALNIA 184 (362)
T ss_pred HHHHHcCCCCCCCCCCCCcccccchhcCccccCchhhccccHHHHHHHHHHHhCCCCeEEEEECCCCcccCHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHcCCCEEEEEecCCccccccccccccCCCchhhhcccccccc
Q 026778 190 AVTEAPVIFICRNNGWAISTPISDQFRSIPSLPCLSNILTILL 232 (233)
Q Consensus 190 ~~~~lPvvfvv~nN~~ais~~~~~q~~~~~~~~~~~~~~~~~~ 232 (233)
+.|+||+||||+||+|+||||.+.++..+.++.+-.++|.++|
T Consensus 185 ~~~~lPvvfvveNN~~aist~~~~~~~~~~~~~~~~~~p~~~V 227 (362)
T PLN02269 185 ALWDLPVIFVCENNHYGMGTAEWRAAKSPAYYKRGDYVPGLKV 227 (362)
T ss_pred hccCcCEEEEEeCCCEeccCchhhhccchHHHHhhcCCCeEEE
Confidence 9999999999999999999999999999999888788888775
No 3
>KOG1182 consensus Branched chain alpha-keto acid dehydrogenase complex, alpha subunit [Energy production and conversion]
Probab=100.00 E-value=6.2e-60 Score=422.58 Aligned_cols=232 Identities=61% Similarity=1.002 Sum_probs=223.6
Q ss_pred CccccCCCCCCCCeeEEeCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHhHHHHHHHHHHhcCcccccccCcchHHHHHHH
Q 026778 1 MRFISESSEERIPCYRVLDDDGQPFPDSSFVKVSEGVAIKMYNDMVTLQTMDTIFYEAQRQGRISFYLTTSGEEAINIAS 80 (233)
Q Consensus 1 ~~~~~~~~~~~~~~~~vl~~~g~~~~~~~~~~~s~e~l~~lyr~M~~~R~~d~~~~~l~r~G~i~~~~~~~GqEa~~vg~ 80 (233)
|+||++++++.+|.|||+|+||++.++.+.+.+++|..++||+.|+++..+|..+++.||||+|.||.++.|+||+.+|.
T Consensus 51 l~fI~~~d~~~iPiYRV~d~~G~ii~~sqdp~~~ee~~~kmy~~M~~Ln~MD~IlYesQRQGRiSFYmT~~GEEa~higS 130 (432)
T KOG1182|consen 51 LEFIQPSDTPRIPIYRVMDADGQIIDKSQDPQLSEEVVLKMYKDMTLLNIMDRILYESQRQGRISFYMTNFGEEAIHIGS 130 (432)
T ss_pred eeecCcccCCCCceEEEecCCCcccCcccCCCcCHHHHHHHHHHHHHHHHHHHHHHHHhhcceEEEEEeccchhhhhhhh
Confidence 68999999999999999999999999888999999999999999999999999999999999999999999999999999
Q ss_pred HhccCCCCeEecCCccchhhhhcCCCHHHHHHHHhcCCCCCCCCCCCCcccCCCccccccccccCCCCchhhhHHHHHhh
Q 026778 81 AAAIKNDDFVVPQYREPGVLLWRGFSMQEFANQCFGNKADYGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALK 160 (233)
Q Consensus 81 ~~aL~~~D~~~~~yR~~~~~l~rG~~~~~~l~e~~g~~~g~~~Gr~~~~H~~~~~~~~~~~~g~lG~~~~~A~G~A~a~k 160 (233)
++||.|.|.|++.||+-|++|+||.++++++.|+||+..+..+||+||+|+++++.||++.++||.+|+|.|+|.|+|.|
T Consensus 131 AAAL~p~Dli~gQYREaGVLlwRgftle~f~~qCyGn~~d~gkGrQMPvHyGs~elnf~tissplatqlpqAvGaaYa~k 210 (432)
T KOG1182|consen 131 AAALEPQDLIYGQYREAGVLLWRGFTLEEFMNQCYGNKSDLGKGRQMPVHYGSKELNFVTISSPLATQLPQAVGAAYALK 210 (432)
T ss_pred hhhCCcccccccccccCceEEEcCccHHHHHHHhcCCccccccccccccccCccccceEEecchhhhccchhhhhhhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hcCCC-CeEEEEEcCCccchhhHHHHHHHHHHcCCCEEEEEecCCccccccccccccCCCchhh--hcccccccc
Q 026778 161 MDRKD-ACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSIPSLPC--LSNILTILL 232 (233)
Q Consensus 161 ~~~~~-~vvv~~~GDG~~~~G~~~Ealn~A~~~~lPvvfvv~nN~~ais~~~~~q~~~~~~~~~--~~~~~~~~~ 232 (233)
+++++ .++||+||||+++||+||.|+|||++...|+||+|.||+|+||||+++|+.+++|+.| -++|-+|+|
T Consensus 211 ~~~~nnac~V~yfGdG~aSEGD~HA~~NfAAtle~Pvif~CRNNG~AISTptseQyr~DGIa~kG~aYGi~sIRV 285 (432)
T KOG1182|consen 211 MRKKNNACAVTYFGDGAASEGDAHAAFNFAATLECPVIFFCRNNGWAISTPTSEQYRGDGIAVKGPAYGIRSIRV 285 (432)
T ss_pred hcccCCeEEEEEecCCcccccchhhhhhHHHHhCCCEEEEEcCCCeeeccccHHHhcCCceEEeccccceEEEEe
Confidence 87766 8999999999999999999999999999999999999999999999999999999765 456666665
No 4
>CHL00149 odpA pyruvate dehydrogenase E1 component alpha subunit; Reviewed
Probab=100.00 E-value=4.6e-56 Score=408.44 Aligned_cols=203 Identities=23% Similarity=0.385 Sum_probs=192.3
Q ss_pred CCCCCHHHHHHHHHHHHHHhHHHHHHHHHHhcCcc-cccccCcchHHHHHHHHhccCCCCeEecCCccchhhhhcCCCHH
Q 026778 30 FVKVSEGVAIKMYNDMVTLQTMDTIFYEAQRQGRI-SFYLTTSGEEAINIASAAAIKNDDFVVPQYREPGVLLWRGFSMQ 108 (233)
Q Consensus 30 ~~~~s~e~l~~lyr~M~~~R~~d~~~~~l~r~G~i-~~~~~~~GqEa~~vg~~~aL~~~D~~~~~yR~~~~~l~rG~~~~ 108 (233)
.+.+|+|+++++||.|+++|.||+++.++++||++ +|+|++.||||++||++.+|+++||+||+||+|+++|+||+|+.
T Consensus 14 ~~~~~~~~ll~~y~~M~~~R~~e~~~~~~~~~g~i~g~~~~~~GqEa~~vg~~~al~~~D~~~~~yR~~~~~la~G~~~~ 93 (341)
T CHL00149 14 ENNINSMWLLVLYEDMLLGRNFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGVIKLLAETDYVCSTYRDHVHALSKGVPPK 93 (341)
T ss_pred ccCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccCCCCChHHHHHHHHHhCCCCCEEEcccccHHHHHHcCCCHH
Confidence 45789999999999999999999999999999999 69999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCCCCCCCCCCcccCCCccccccccccCCCCchhhhHHHHHhhhcC-------CCCeEEEEEcCCccchhh
Q 026778 109 EFANQCFGNKADYGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDR-------KDACAVTYFGDGGTSEGD 181 (233)
Q Consensus 109 ~~l~e~~g~~~g~~~Gr~~~~H~~~~~~~~~~~~g~lG~~~~~A~G~A~a~k~~~-------~~~vvv~~~GDG~~~~G~ 181 (233)
++|+|+||+++|+|+||+||+|+++++.++++.++++|.++|+|+|+|+|.|+++ ++++|+|++|||++++|+
T Consensus 94 ~~~ae~~g~~~g~~~Gr~gs~H~~~~~~~~~~~~g~lG~~lp~AvGaa~A~k~~~~~~~~~~~~~vvv~~~GDGa~~~G~ 173 (341)
T CHL00149 94 NVMAELFGKETGCSRGRGGSMHIFSAPHNFLGGFAFIGEGIPIALGAAFQSIYRQQVLKEVQPLRVTACFFGDGTTNNGQ 173 (341)
T ss_pred HHHHHHcCCCCCCCCCCCCCccccchhcCccCCChhhhccHHHHHHHHHHHHHhccccccCCCCCEEEEEeCCchhhhcH
Confidence 9999999999999999999999999999999999999999999999999999987 489999999999999999
Q ss_pred HHHHHHHHHHcCCCEEEEEecCCccccccccccccCCCchhhhc--ccccccc
Q 026778 182 FHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSIPSLPCLS--NILTILL 232 (233)
Q Consensus 182 ~~Ealn~A~~~~lPvvfvv~nN~~ais~~~~~q~~~~~~~~~~~--~~~~~~~ 232 (233)
|||+||+|+.|+||+||||+||+|+||++.+.++...+++++.+ ++|+++|
T Consensus 174 ~~Ealn~A~~~~LPvifvv~NN~~~i~~~~~~~~~~~d~a~~a~a~G~~~~~V 226 (341)
T CHL00149 174 FFECLNMAVLWKLPIIFVVENNQWAIGMAHHRSTSIPEIHKKAEAFGLPGIEV 226 (341)
T ss_pred HHHHHHHHhhcCCCEEEEEEeCCeeeecchhheeCCccHHHHHHhCCCCEEEE
Confidence 99999999999999999999999999999999988888876665 4566554
No 5
>TIGR03182 PDH_E1_alph_y pyruvate dehydrogenase E1 component, alpha subunit. Members of this protein family are the alpha subunit of the E1 component of pyruvate dehydrogenase (PDH). This model represents one branch of a larger family that E1-alpha proteins from 2-oxoisovalerate dehydrogenase, acetoin dehydrogenase, another PDH clade, etc.
Probab=100.00 E-value=2.9e-55 Score=399.09 Aligned_cols=198 Identities=26% Similarity=0.438 Sum_probs=188.5
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHhcCcc-cccccCcchHHHHHHHHhccCCCCeEecCCccchhhhhcCCCHHHHHHH
Q 026778 35 EGVAIKMYNDMVTLQTMDTIFYEAQRQGRI-SFYLTTSGEEAINIASAAAIKNDDFVVPQYREPGVLLWRGFSMQEFANQ 113 (233)
Q Consensus 35 ~e~l~~lyr~M~~~R~~d~~~~~l~r~G~i-~~~~~~~GqEa~~vg~~~aL~~~D~~~~~yR~~~~~l~rG~~~~~~l~e 113 (233)
+|+|+++||+|+++|.||+++.+++|||++ +|+|++.||||++||++.+|+++||+||+||+|+++|+||+|+.++|+|
T Consensus 1 ~~~l~~~y~~M~~~R~~d~~~~~l~~~g~~~~~~~~~~GqEa~~vg~~~al~~~D~~~~~yR~~~~~la~G~~~~~~~~~ 80 (315)
T TIGR03182 1 KEELLELYRDMLLIRRFEEKAGQLYGMGKIGGFCHLYIGQEAVAVGLIAALKPDDYVITSYRDHGHALARGVPPKEVMAE 80 (315)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHhCCccccccCCCCChHHHHHHHHHhCCCCCEEEechhhHHHHHHcCCCHHHHHHH
Confidence 478999999999999999999999999999 5899999999999999999999999999999999999999999999999
Q ss_pred HhcCCCCCCCCCCCCcccCCCccccccccccCCCCchhhhHHHHHhhhcCCCCeEEEEEcCCccchhhHHHHHHHHHHcC
Q 026778 114 CFGNKADYGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTE 193 (233)
Q Consensus 114 ~~g~~~g~~~Gr~~~~H~~~~~~~~~~~~g~lG~~~~~A~G~A~a~k~~~~~~vvv~~~GDG~~~~G~~~Ealn~A~~~~ 193 (233)
++|+++|+|+||+||+|+++++.|+++.++++|.++|.|+|+|+|.|+++++++++|++|||++++|.|||+||+|+.|+
T Consensus 81 ~~g~~~g~~~Gr~g~~h~~~~~~~~~~~~g~~G~~lp~AiGaa~A~~~~~~~~~vv~~~GDGa~~~g~~~ealn~A~~~~ 160 (315)
T TIGR03182 81 LTGRATGCSKGKGGSMHMFDREKNFYGGHGIVGAQVPLATGLAFANKYRGNDNVTACFFGDGAANQGQFYESFNMAALWK 160 (315)
T ss_pred HcCCCCCCCCCCCCCCCcCchhhCcccCcCcccccccHHHHHHHHHHHhCCCCEEEEEeCCCcccccHHHHHHHHhhccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCEEEEEecCCccccccccccccCCCchhhhc--ccccccc
Q 026778 194 APVIFICRNNGWAISTPISDQFRSIPSLPCLS--NILTILL 232 (233)
Q Consensus 194 lPvvfvv~nN~~ais~~~~~q~~~~~~~~~~~--~~~~~~~ 232 (233)
+|+||||+||+|+++++.+.++...+++.+-+ ++|.++|
T Consensus 161 lPvi~vv~NN~yg~s~~~~~~~~~~~~a~~A~a~G~~~~~V 201 (315)
T TIGR03182 161 LPVIFVIENNLYAMGTSVERSSSVTDLYKRGESFGIPGERV 201 (315)
T ss_pred cCEEEEEEcCCccccCCHHHHhCCcCHHHHHHhCCCCEEEE
Confidence 99999999999999999998888888765544 5666654
No 6
>PLN02374 pyruvate dehydrogenase (acetyl-transferring)
Probab=100.00 E-value=3.1e-54 Score=406.51 Aligned_cols=203 Identities=25% Similarity=0.415 Sum_probs=192.1
Q ss_pred CCCCCHHHHHHHHHHHHHHhHHHHHHHHHHhcCcc-cccccCcchHHHHHHHHhccCCCCeEecCCccchhhhhcCCCHH
Q 026778 30 FVKVSEGVAIKMYNDMVTLQTMDTIFYEAQRQGRI-SFYLTTSGEEAINIASAAAIKNDDFVVPQYREPGVLLWRGFSMQ 108 (233)
Q Consensus 30 ~~~~s~e~l~~lyr~M~~~R~~d~~~~~l~r~G~i-~~~~~~~GqEa~~vg~~~aL~~~D~~~~~yR~~~~~l~rG~~~~ 108 (233)
.+.+++|+++++||+|+++|.||+++.+++++|++ +++|++.||||++||++++|+++||+|++||+|+++|+||+|++
T Consensus 80 ~~~ls~e~ll~lyr~M~~~R~fEe~~~~l~~~Gki~g~~h~~~GqEA~~vg~~~aL~~~D~v~~~yR~h~~~La~G~~~~ 159 (433)
T PLN02374 80 DLLVTREEGLELYEDMVLGRSFEDMCAQMYYRGKMFGFVHLYNGQEAVSTGFIKLLKKDDSVVSTYRDHVHALSKGVPAR 159 (433)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCcceeccCCCCCcHHHHHHHHHHcCCCCEEEccCcChHHhhhcCCCHH
Confidence 45789999999999999999999999999999999 79999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCCCCCCCCCCCcccCCCccccccccccCCCCchhhhHHHHHhhhcC-------CCCeEEEEEcCCccchhh
Q 026778 109 EFANQCFGNKADYGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDR-------KDACAVTYFGDGGTSEGD 181 (233)
Q Consensus 109 ~~l~e~~g~~~g~~~Gr~~~~H~~~~~~~~~~~~g~lG~~~~~A~G~A~a~k~~~-------~~~vvv~~~GDG~~~~G~ 181 (233)
++|+|++|+++|+|+||+|++|++++++|+.+.++++|.++|+|+|+|+|.|+++ .+++++|++|||++++|+
T Consensus 160 ~~mael~Gk~~g~~~GrggsmH~~~~~~~~~g~~g~lG~~lP~AvGaA~A~k~~~~~~~~~~~~~vvv~~~GDGa~~eG~ 239 (433)
T PLN02374 160 AVMSELFGKATGCCRGQGGSMHMFSKEHNLLGGFAFIGEGIPVATGAAFSSKYRREVLKEESCDDVTLAFFGDGTCNNGQ 239 (433)
T ss_pred HHHHHHcCCCCCCCCCCCCcCccCchhhCCCCCceeccCchhHHHHHHHHHHHhhccccccCCCCEEEEEECCCccccCh
Confidence 9999999999999999999999999999999999999999999999999999986 488999999999999999
Q ss_pred HHHHHHHHHHcCCCEEEEEecCCccccccccccccCCCchhhhc--ccccccc
Q 026778 182 FHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSIPSLPCLS--NILTILL 232 (233)
Q Consensus 182 ~~Ealn~A~~~~lPvvfvv~nN~~ais~~~~~q~~~~~~~~~~~--~~~~~~~ 232 (233)
|||+||+|+.|+||+||||+||+|+||++...++...+++.+.. ++|.++|
T Consensus 240 f~EaLn~A~~~~LPvIfVV~NN~yaig~~~~~~t~~~dia~~A~a~G~~~~~V 292 (433)
T PLN02374 240 FFECLNMAALWKLPIVFVVENNLWAIGMSHLRATSDPEIWKKGPAFGMPGVHV 292 (433)
T ss_pred HHHHHHHHHHhCCCEEEEEeCCCEeecceeeeccCCCCHHHHHHhcCCcEEEE
Confidence 99999999999999999999999999999999987777766554 4666654
No 7
>KOG0225 consensus Pyruvate dehydrogenase E1, alpha subunit [Energy production and conversion]
Probab=100.00 E-value=3.8e-53 Score=380.93 Aligned_cols=202 Identities=27% Similarity=0.471 Sum_probs=195.2
Q ss_pred CCCCCCHHHHHHHHHHHHHHhHHHHHHHHHHhcCcc-cccccCcchHHHHHHHHhccCCCCeEecCCccchhhhhcCCCH
Q 026778 29 SFVKVSEGVAIKMYNDMVTLQTMDTIFYEAQRQGRI-SFYLTTSGEEAINIASAAAIKNDDFVVPQYREPGVLLWRGFSM 107 (233)
Q Consensus 29 ~~~~~s~e~l~~lyr~M~~~R~~d~~~~~l~r~G~i-~~~~~~~GqEa~~vg~~~aL~~~D~~~~~yR~~~~~l~rG~~~ 107 (233)
....+|+|+++++||+|+++|+||..+-+++++++| ||+|.+.||||++||+-++|++.|.++++||+|++.+.||+++
T Consensus 52 ~s~~~t~ee~L~~Y~~M~~~RrmE~aad~lYK~k~IRGFCHLy~GQEAvavGme~ait~~D~iItsYR~Hg~~~~~G~S~ 131 (394)
T KOG0225|consen 52 TSVELTKEEALKYYRDMQTIRRMELAADQLYKAKKIRGFCHLYDGQEAVAVGMEAAITKSDSIITSYRCHGWTYLRGVSV 131 (394)
T ss_pred ceEEecHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhceeeeecccHHHHHHHHHHhccCCCceEEEeeeeeEEeecCccH
Confidence 345789999999999999999999999999999999 8999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCCCCCCCCCcccCCCccccccccccCCCCchhhhHHHHHhhhcCCCCeEEEEEcCCccchhhHHHHHH
Q 026778 108 QEFANQCFGNKADYGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALN 187 (233)
Q Consensus 108 ~~~l~e~~g~~~g~~~Gr~~~~H~~~~~~~~~~~~g~lG~~~~~A~G~A~a~k~~~~~~vvv~~~GDG~~~~G~~~Ealn 187 (233)
.++|+|++|+.+|+|+|++||||+..++ |++.+|+||.|+|+++|+|+|.|+++++.|++++.|||+.|||++|||+|
T Consensus 132 ~~v~aEL~Gr~~Gc~kGKGGSMHmy~k~--FyGGnGIVGAQiPLGaGia~A~kY~~~~~v~~alYGDGAaNQGQ~fEa~N 209 (394)
T KOG0225|consen 132 REVLAELMGRQAGCSKGKGGSMHMYAKN--FYGGNGIVGAQIPLGAGIAFAQKYNREDAVCFALYGDGAANQGQVFEAFN 209 (394)
T ss_pred HHHHHHHhccccccccCCCcceeeeccc--ccCccceeccCCCccccHHHHHHhccCCceEEEEeccccccchhHHHHhh
Confidence 9999999999999999999999998866 99999999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCCEEEEEecCCccccccccccccCCCchhhhcccccccc
Q 026778 188 FSAVTEAPVIFICRNNGWAISTPISDQFRSIPSLPCLSNILTILL 232 (233)
Q Consensus 188 ~A~~~~lPvvfvv~nN~~ais~~~~~q~~~~~~~~~~~~~~~~~~ 232 (233)
+|+.|+||+|||||||.|++.|+.++.++...+-.|=.-+|+|.|
T Consensus 210 MA~LW~LP~IFvCENN~yGMGTs~~Rasa~teyykRG~yiPGl~V 254 (394)
T KOG0225|consen 210 MAALWKLPVIFVCENNHYGMGTSAERASASTEYYKRGDYIPGLKV 254 (394)
T ss_pred HHHHhCCCEEEEEccCCCccCcchhhhhcChHHHhccCCCCceEE
Confidence 999999999999999999999999999998888888788999876
No 8
>TIGR03181 PDH_E1_alph_x pyruvate dehydrogenase E1 component, alpha subunit. Members of this protein family are the alpha subunit of the E1 component of pyruvate dehydrogenase (PDH). This model represents one branch of a larger family that E1-alpha proteins from 2-oxoisovalerate dehydrogenase, acetoin dehydrogenase, another PDH clade, etc.
Probab=100.00 E-value=4.9e-52 Score=381.64 Aligned_cols=211 Identities=39% Similarity=0.573 Sum_probs=193.5
Q ss_pred CeeEEeCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHhHHHHHHHHHHhcCcccccccCcchHHHHHHHHhccCCCCeEec
Q 026778 13 PCYRVLDDDGQPFPDSSFVKVSEGVAIKMYNDMVTLQTMDTIFYEAQRQGRISFYLTTSGEEAINIASAAAIKNDDFVVP 92 (233)
Q Consensus 13 ~~~~vl~~~g~~~~~~~~~~~s~e~l~~lyr~M~~~R~~d~~~~~l~r~G~i~~~~~~~GqEa~~vg~~~aL~~~D~~~~ 92 (233)
|.||||+.+|...++...+.+|+|+++++||+|+++|.||+++.+++++|+++|+|++.||||++||++.+|+++||+++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~y~~m~~~R~~e~~~~~~~~~g~i~~~~~~~GqEa~~vg~~~al~~~D~~~~ 80 (341)
T TIGR03181 1 ELVQVLDEDGNVVDPEPAPDLSDEELVELYRDMVLTRRFDTKALALQRQGRLGTYAPNLGQEAAQVGSALALRKDDWVFP 80 (341)
T ss_pred CceEEECCCCCcCCccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCceecccCCCChHHHHHHHHHHcCCCCEEEc
Confidence 67999999998766533467999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCccchhhhhcCCCHHHHHHHHhcCCCCCCCCCCCCcccCCCccccccccccCCCCchhhhHHHHHhhhcCCCCeEEEEE
Q 026778 93 QYREPGVLLWRGFSMQEFANQCFGNKADYGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYF 172 (233)
Q Consensus 93 ~yR~~~~~l~rG~~~~~~l~e~~g~~~g~~~Gr~~~~H~~~~~~~~~~~~g~lG~~~~~A~G~A~a~k~~~~~~vvv~~~ 172 (233)
+||+|+++|+||+++.++|+|++|+.+|.+ .+++.|+++.++++|.++|.|+|+|+|.|+.+.+++|+|++
T Consensus 81 ~yR~h~~~l~~G~~~~~~~ae~~g~~~g~~---------~~~~~~~~g~~~~vG~~lp~AiGaAla~k~~~~~~~vv~~~ 151 (341)
T TIGR03181 81 SYRDHAAMLARGVPLVEILLYWRGDERGSW---------DPEGVNILPPNIPIGTQYLHAAGVAYALKLRGEDNVAVTYF 151 (341)
T ss_pred chhhHHHHHHcCCCHHHHHHHhcCcCcCCC---------CchhcCccCCCchHhcchhHHHhHHHHHHhhCCCCEEEEEe
Confidence 999999999999999999999999986531 25789999999999999999999999999999999999999
Q ss_pred cCCccchhhHHHHHHHHHHcCCCEEEEEecCCccccccccccccCCCchhhhc--ccccccc
Q 026778 173 GDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSIPSLPCLS--NILTILL 232 (233)
Q Consensus 173 GDG~~~~G~~~Ealn~A~~~~lPvvfvv~nN~~ais~~~~~q~~~~~~~~~~~--~~~~~~~ 232 (233)
|||++++|.|||+||+|+.|+||+||||+||+|+++++...++...+++++.+ ++|+++|
T Consensus 152 GDGa~~~g~~~EaL~tA~~~~LPvi~Vv~NN~~~~~~~~~~~~~~~d~~~~a~a~G~~~~~V 213 (341)
T TIGR03181 152 GDGGTSEGDFYEALNFAGVFKAPVVFFVQNNQWAISVPRSKQTAAPTLAQKAIAYGIPGVQV 213 (341)
T ss_pred cCCccccChHHHHHHHHhccCCCEEEEEECCCCccccchhhhhCCcCHHHHHhhCCCCEEEE
Confidence 99999999999999999999999999999999999999888887778866554 3565554
No 9
>cd02000 TPP_E1_PDC_ADC_BCADC Thiamine pyrophosphate (TPP) family, E1 of PDC_ADC_BCADC subfamily, TPP-binding module; composed of proteins similar to the E1 components of the human pyruvate dehydrogenase complex (PDC), the acetoin dehydrogenase complex (ADC) and the branched chain alpha-keto acid dehydrogenase/2-oxoisovalerate dehydrogenase complex (BCADC). PDC catalyzes the irreversible oxidative decarboxylation of pyruvate to produce acetyl-CoA in the bridging step between glycolysis and the citric acid cycle. ADC participates in the breakdown of acetoin while BCADC participates in the breakdown of branched chain amino acids. BCADC catalyzes the oxidative decarboxylation of 4-methyl-2-oxopentanoate, 3-methyl-2-oxopentanoate and 3-methyl-2-oxobutanoate (branched chain 2-oxo acids derived from the transamination of leucine, valine and isoleucine).
Probab=100.00 E-value=4.1e-52 Score=374.39 Aligned_cols=192 Identities=42% Similarity=0.696 Sum_probs=182.1
Q ss_pred HHHHHHHHhHHHHHHHHHHhcCccc-ccccCcchHHHHHHHHhccCCCCeEecCCccchhhhhcCCCHHHHHHHHhcCCC
Q 026778 41 MYNDMVTLQTMDTIFYEAQRQGRIS-FYLTTSGEEAINIASAAAIKNDDFVVPQYREPGVLLWRGFSMQEFANQCFGNKA 119 (233)
Q Consensus 41 lyr~M~~~R~~d~~~~~l~r~G~i~-~~~~~~GqEa~~vg~~~aL~~~D~~~~~yR~~~~~l~rG~~~~~~l~e~~g~~~ 119 (233)
+||+|+++|.||+++.+++|||++. |+|++.||||++||++.+|+++||++|+||+|+++|+||+|+.++|+|++|+++
T Consensus 1 ~y~~m~~~R~~e~~~~~~~~~g~~~~~~~~~~GqEa~~vg~~~~l~~~D~~~~~yR~~~~~la~G~~~~~~~~e~~g~~~ 80 (293)
T cd02000 1 LYRTMVLIRRFDERLLELYRQGKIGGFYHLSIGQEAVAVGVAAALRPGDWVFPTYRDHGHALARGVDLKEMLAELFGKET 80 (293)
T ss_pred CHHHHHHHHHHHHHHHHHHHCCccccccCCCCChHHHHHHHHHHCCCCCEEEecchhHHHHHHcCCCHHHHHHHHcCCCC
Confidence 5999999999999999999999997 599999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCcccCCCccccccccccCCCCchhhhHHHHHhhhcCCCCeEEEEEcCCccchhhHHHHHHHHHHcCCCEEEE
Q 026778 120 DYGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFI 199 (233)
Q Consensus 120 g~~~Gr~~~~H~~~~~~~~~~~~g~lG~~~~~A~G~A~a~k~~~~~~vvv~~~GDG~~~~G~~~Ealn~A~~~~lPvvfv 199 (233)
|+++||+||+|+++++.|+++.++++|.++|.|+|+|+|.|+.+++++++|++|||++++|.|||+||+|+.+++|+|||
T Consensus 81 g~~~G~~g~~h~~~~~~~~~~~~g~lG~~~p~a~G~a~a~k~~~~~~~vv~~~GDGa~~~g~~~E~l~~A~~~~lPvi~v 160 (293)
T cd02000 81 GPCKGRGGSMHIGDKEKNFFGGNGIVGGQVPLAAGAALALKYRGEDRVAVCFFGDGATNEGDFHEALNFAALWKLPVIFV 160 (293)
T ss_pred CCCCCCCCCCCCCchhcCccccccccccchhHHHHHHHHHHHhCCCCEEEEEeCCCccccchHHHHHHHHHhhCCCEEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EecCCccccccccccccCCCchhhhc--ccccccc
Q 026778 200 CRNNGWAISTPISDQFRSIPSLPCLS--NILTILL 232 (233)
Q Consensus 200 v~nN~~ais~~~~~q~~~~~~~~~~~--~~~~~~~ 232 (233)
|+||+|+++++.+.+++..+++.+.+ ++|.++|
T Consensus 161 v~NN~~~i~~~~~~~~~~~~~~~~a~a~G~~~~~V 195 (293)
T cd02000 161 CENNGYAISTPTSRQTAGTSIADRAAAYGIPGIRV 195 (293)
T ss_pred EeeCCeeccCCHHHHhCCccHHHHHHhCCCCEEEE
Confidence 99999999999988887777766555 4555443
No 10
>PF00676 E1_dh: Dehydrogenase E1 component; InterPro: IPR001017 This entry includes a number of dehydrogenases all of which use thiamine pyrophosphate as a cofactor and are members of a multienzyme complex. Pyruvate dehydrogenase (1.2.4.1 from EC), a component of the multienzyme pyruvate dehydrogenase complex; 2-oxoglutarate dehydrogenase (1.2.4.2 from EC), a component of the multienzyme 2-oxoglutarate dehydrogenase which contains multiple copies of three enzymatic components: 2-oxoglutarate dehydrogenase (E1), dihydrolipoamide succinyltransferase (E2) and lipoamide dehydrogenase (E3); and 2-oxoisovalerate dehydrogenase (1.2.4.4 from EC), a component of the multienzyme branched-chain alpha-keto dehydrogenase complex all belong to this family.; GO: 0016624 oxidoreductase activity, acting on the aldehyde or oxo group of donors, disulfide as acceptor, 0008152 metabolic process; PDB: 1X7Y_A 1V1M_A 1X7W_A 1OLU_A 2J9F_A 2BEW_A 1V11_A 2BFE_A 1U5B_A 2BEU_A ....
Probab=100.00 E-value=8.5e-51 Score=367.71 Aligned_cols=190 Identities=40% Similarity=0.621 Sum_probs=176.8
Q ss_pred HHHHHHHhHHHHHHHHHHhcCcccccccCcchHHHHHHHHhccCCCCeEecCCccchhhhhcCCCHHHHHHHHhcCCCCC
Q 026778 42 YNDMVTLQTMDTIFYEAQRQGRISFYLTTSGEEAINIASAAAIKNDDFVVPQYREPGVLLWRGFSMQEFANQCFGNKADY 121 (233)
Q Consensus 42 yr~M~~~R~~d~~~~~l~r~G~i~~~~~~~GqEa~~vg~~~aL~~~D~~~~~yR~~~~~l~rG~~~~~~l~e~~g~~~g~ 121 (233)
||.|++.|..|+++..++++|+.+|+|++.||||++++++.+|+++||+||+||+|+++|++|+++.++|+|++|+..+.
T Consensus 1 y~~m~~~r~~d~~~~~~~~~~~~g~~~~~~GqEa~~v~~~~~l~~~D~v~~~yR~~~~~la~g~~~~~~~~e~~g~~~g~ 80 (300)
T PF00676_consen 1 YRMMLIRRFEDERARKLQRQGRFGFYHLSAGQEAIQVAAAAALRPGDWVFPYYRDHGHALARGIDLEEIFAELLGKAKGH 80 (300)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSSSCTT-TTTCHHHHHHHHHHSCTTSEEEECSTTHHHHHHTTT-HHHHHHHHHTBTTST
T ss_pred CchHHHHHHHHHHHHHHhhCCCeEEecchHHHHHHHHHHHHhccCCCEEEecccchhhhhhccccccchhHHhcCcccCC
Confidence 67777777777778888889988999999999999999999999999999999999999999999999999999999888
Q ss_pred CCCCCCCcccCCCccccccccccCCCCchhhhHHHHHhhhcCCCCeEEEEEcCCccchhhHHHHHHHHHHcCCCEEEEEe
Q 026778 122 GKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICR 201 (233)
Q Consensus 122 ~~Gr~~~~H~~~~~~~~~~~~g~lG~~~~~A~G~A~a~k~~~~~~vvv~~~GDG~~~~G~~~Ealn~A~~~~lPvvfvv~ 201 (233)
++|+. ++|+.++++++++.++++|.++|+|+|+|+|.|+++++.|++|++|||+++||+||||||+|+.|+|||||||+
T Consensus 81 ~g~~~-~~~~~~~~~~~~~~~~~vg~~~p~a~G~A~a~k~~~~~~v~v~~~GDga~~qG~~~EalN~A~~~~lPvifvve 159 (300)
T PF00676_consen 81 GGGRH-PLHFSDKGLNILGASSPVGAQVPIAAGVALAIKYRGKDGVVVCFFGDGATSQGDFHEALNLAALWKLPVIFVVE 159 (300)
T ss_dssp TTTGC-TTEEEBTTTTBEEEESSTTTHHHHHHHHHHHHHHTTSSEEEEEEEETGGGGSHHHHHHHHHHHHTTTSEEEEEE
T ss_pred CCCcc-ccccccccceeeeccccccccCccccchhHhhhhcCCceeEEEEecCcccccCccHHHHHHHhhccCCeEEEEe
Confidence 88888 89999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCccccccccccccCCCchh--hhcccccccc
Q 026778 202 NNGWAISTPISDQFRSIPSLP--CLSNILTILL 232 (233)
Q Consensus 202 nN~~ais~~~~~q~~~~~~~~--~~~~~~~~~~ 232 (233)
||+|+||||.++|++.+.+++ +-.++|.+.|
T Consensus 160 NN~~aist~~~~~~~~~~~~~~a~~~gip~~~V 192 (300)
T PF00676_consen 160 NNQYAISTPTEEQTASPDIADRAKGYGIPGIRV 192 (300)
T ss_dssp EESEETTEEHHHHCSSSTSGGGGGGTTSEEEEE
T ss_pred cCCcccccCccccccccchhhhhhccCCcEEEE
Confidence 999999999999999999876 5567777765
No 11
>PRK09404 sucA 2-oxoglutarate dehydrogenase E1 component; Reviewed
Probab=100.00 E-value=3.2e-35 Score=296.93 Aligned_cols=193 Identities=15% Similarity=0.103 Sum_probs=169.0
Q ss_pred CCCHHHHHHHHHHHHHHhHHHHHHHHHHhcCcccccccCcchHHHHHHHHh------ccCCCCeEec-CCccchhhhh--
Q 026778 32 KVSEGVAIKMYNDMVTLQTMDTIFYEAQRQGRISFYLTTSGEEAINIASAA------AIKNDDFVVP-QYREPGVLLW-- 102 (233)
Q Consensus 32 ~~s~e~l~~lyr~M~~~R~~d~~~~~l~r~G~i~~~~~~~GqEa~~vg~~~------aL~~~D~~~~-~yR~~~~~l~-- 102 (233)
.+|+|+++++|++|+++|.||+.+...+..++.. ++.|||++.+|+.. +++++|++++ +||+|++.|+
T Consensus 185 ~~s~e~~~~il~~m~~~r~fE~fl~~~f~~~Krf---~~eG~Ea~i~gl~~li~~a~~lg~~D~vigmaHRgrlnvLa~v 261 (924)
T PRK09404 185 SFSAEEKKAILERLTAAEGFERFLHTKFVGQKRF---SLEGGESLIPMLDEIIRRAGKLGVKEIVIGMAHRGRLNVLVNV 261 (924)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHhccCCcc---cccchhhHHHHHHHHHHHHHhCCCCCEEEecCcCchHHHHHHh
Confidence 6899999999999999999999999999888754 68999999999988 6668999999 6999999999
Q ss_pred cCCCHHHHHHHHhcCC-------CCCCC----------CCCCCcccCCCccccccccccCCCCchhhhHHHHHhhhcCCC
Q 026778 103 RGFSMQEFANQCFGNK-------ADYGK----------GRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRKD 165 (233)
Q Consensus 103 rG~~~~~~l~e~~g~~-------~g~~~----------Gr~~~~H~~~~~~~~~~~~g~lG~~~~~A~G~A~a~k~~~~~ 165 (233)
+|+|++++|+|++|++ +|.++ |+++++|++... ..+++|.+.|+|+|.|+|.++++.+
T Consensus 262 ~G~~~~~ifaEf~Gk~~~~~~~~~GdvkyHlG~~~~~~g~gg~mhi~l~~-----npShleav~Pva~G~A~A~q~~~~~ 336 (924)
T PRK09404 262 LGKPPRDLFAEFEGKHGPDEVLGSGDVKYHLGFSSDRETDGGEVHLSLAF-----NPSHLEIVNPVVEGSVRARQDRRGD 336 (924)
T ss_pred cCCCHHHHHHHHcCCCCCCCCCCCCCcccccCccccccCCCCeeEeeccC-----CccccccccCeehhHHHHHHHhcCC
Confidence 5999999999999997 44444 666777765544 2388999999999999999999888
Q ss_pred ------CeEEEEEcCCcc-chhhHHHHHHHHHHcCCC---EEEEEecCCccccccccccccCCCchh--hhcccccccc
Q 026778 166 ------ACAVTYFGDGGT-SEGDFHAALNFSAVTEAP---VIFICRNNGWAISTPISDQFRSIPSLP--CLSNILTILL 232 (233)
Q Consensus 166 ------~vvv~~~GDG~~-~~G~~~Ealn~A~~~~lP---vvfvv~nN~~ais~~~~~q~~~~~~~~--~~~~~~~~~~ 232 (233)
.+++|++||||+ +||.|||+||+|+.|++| +||||+||+|+++||.+++.+...+.+ +-.++|.+.|
T Consensus 337 ~~~~~~~v~v~~~GDgA~agqG~v~EalNlA~l~~lp~ggvIfvveNNq~g~tT~~~~~~s~~~~sd~Ak~~giP~~~V 415 (924)
T PRK09404 337 GQDRKKVLPILIHGDAAFAGQGVVAETLNLSQLRGYRTGGTIHIVINNQIGFTTSPPDDRSTPYCTDVAKMVQAPIFHV 415 (924)
T ss_pred cccccceEEEEEecCccccCCChHHHHHHHHHhcCCCCCCEEEEEEeCCEEEeeCHHHhccchhHHHHHeecCCcEEEE
Confidence 899999999998 799999999999999998 999999999999999998877766543 4556787765
No 12
>cd02016 TPP_E1_OGDC_like Thiamine pyrophosphate (TPP) family, E1 of OGDC-like subfamily, TPP-binding module; composed of proteins similar to the E1 component of the 2-oxoglutarate dehydrogenase multienzyme complex (OGDC). OGDC catalyzes the oxidative decarboxylation of 2-oxoglutarate to succinyl-CoA and carbon dioxide, a key reaction of the tricarboxylic acid cycle.
Probab=100.00 E-value=3.1e-34 Score=255.32 Aligned_cols=166 Identities=18% Similarity=0.163 Sum_probs=149.9
Q ss_pred cccCcchHHHHHHHHhccCC------CCeEecC-Cccchhhhh--cCCCHHHHHHHHhcCCC---CCCCCCCCCcccCCC
Q 026778 67 YLTTSGEEAINIASAAAIKN------DDFVVPQ-YREPGVLLW--RGFSMQEFANQCFGNKA---DYGKGRQMPIHYGSN 134 (233)
Q Consensus 67 ~~~~~GqEa~~vg~~~aL~~------~D~~~~~-yR~~~~~l~--rG~~~~~~l~e~~g~~~---g~~~Gr~~~~H~~~~ 134 (233)
.+++.|+|++++++...+++ +||++++ ||++...|+ +|.|++++|+|++|+.+ +.+.|++.+.|++.+
T Consensus 14 rfs~eG~Es~~~~l~~~~~~~~~~~~~d~v~gm~HRgrln~L~~~lg~~~~~if~ef~g~~~~~~~~~~~gdv~yHlg~~ 93 (265)
T cd02016 14 RFGLEGAESLIPALDELIDRAAELGVEEVVIGMAHRGRLNVLANVLGKPLEQIFSEFEGKSEFPEDDEGSGDVKYHLGYS 93 (265)
T ss_pred EEEecCHHHHHHHHHHHHHHHHhcCCCeEEeccCcCCcHHHHHHHhCCCHHHHHHHhhCCCCCCCCCCCCCCcCcCCccC
Confidence 34699999999999999987 7999999 999999999 99999999999999987 556799999999776
Q ss_pred c-----------cccccccccCCCCchhhhHHHHHhhhcC-----CCCeEEEEEcCCcc-chhhHHHHHHHHHHcCCC--
Q 026778 135 K-----------HNYFTVSSTIATQLPHAVGAAYALKMDR-----KDACAVTYFGDGGT-SEGDFHAALNFSAVTEAP-- 195 (233)
Q Consensus 135 ~-----------~~~~~~~g~lG~~~~~A~G~A~a~k~~~-----~~~vvv~~~GDG~~-~~G~~~Ealn~A~~~~lP-- 195 (233)
. ..+.+..|+||+++|+|+|+|+|.|+++ ++.+++|++|||++ +||.|||+||+|+.|++|
T Consensus 94 ~~~~~~~~~~~~~~l~~npS~l~~~~pva~G~A~A~k~~~~~~~~~~~v~v~~~GDgA~~~qG~~~EalNlA~l~~lp~g 173 (265)
T cd02016 94 SDRKTPSGKKVHLSLAPNPSHLEAVNPVVMGKTRAKQDYRGDGERDKVLPILIHGDAAFAGQGVVYETLNLSNLPGYTTG 173 (265)
T ss_pred cccccCCCCeeEEEecCCCcccccccCeehhHHHHHHHhcCCccCCCeEEEEEecCccccCCChHHHHHHHHHhcCCCCC
Confidence 5 6788899999999999999999999998 47899999999995 799999999999999999
Q ss_pred -EEEEEecCCccccccccccccCCCchhhhc--ccccccc
Q 026778 196 -VIFICRNNGWAISTPISDQFRSIPSLPCLS--NILTILL 232 (233)
Q Consensus 196 -vvfvv~nN~~ais~~~~~q~~~~~~~~~~~--~~~~~~~ 232 (233)
+||||+||+|++|||.+++++...+.++-+ ++|.+.|
T Consensus 174 g~ifvveNNq~g~sT~~~~~~~~~~~~~~a~~~gip~~~V 213 (265)
T cd02016 174 GTIHIVVNNQIGFTTDPRDSRSSPYCTDVAKMIGAPIFHV 213 (265)
T ss_pred CEEEEEEeCCEEEEecHHHhcccccHHHHHeecCCCEEEE
Confidence 999999999999999999998887766554 4666654
No 13
>PRK12315 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=99.97 E-value=3e-30 Score=251.80 Aligned_cols=168 Identities=16% Similarity=0.150 Sum_probs=144.0
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHhHHHHHHHHHHhcCcc-cccccCcchHHHHHHHHhccC---CCCeEe--cCCccchhh
Q 026778 27 DSSFVKVSEGVAIKMYNDMVTLQTMDTIFYEAQRQGRI-SFYLTTSGEEAINIASAAAIK---NDDFVV--PQYREPGVL 100 (233)
Q Consensus 27 ~~~~~~~s~e~l~~lyr~M~~~R~~d~~~~~l~r~G~i-~~~~~~~GqEa~~vg~~~aL~---~~D~~~--~~yR~~~~~ 100 (233)
|.+.+.++.++|.++-..+ |. ..+++.++. |+++++.|+ +.++++.++. |.|+++ ++||+|++.
T Consensus 9 p~d~~~l~~~~l~~l~~~i---r~-----~~~~~~~~~~Gh~~~~lg~--vel~~al~~~f~~~~D~ii~d~ghr~~~~~ 78 (581)
T PRK12315 9 PADLKKLSLDELEQLASEI---RT-----ALLEKDSAHGGHVGPNLGV--VELTIALHYVFNSPKDKIVWDVSHQSYPHK 78 (581)
T ss_pred HHHHhhCCHHHHHHHHHHH---HH-----HHHHHHHhcCCCcCcchhH--HHHHHHHHhhcCCCCCcEEEecCCchHHHH
Confidence 3456677777776665443 43 334455666 489999999 7777788887 999999 999999999
Q ss_pred hhcCCCHHHHHHHHhcCCCCCCCCCCCCcccCCCccccccccccCCCCchhhhHHHHHhhhcCCCCeEEEEEcCCccchh
Q 026778 101 LWRGFSMQEFANQCFGNKADYGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEG 180 (233)
Q Consensus 101 l~rG~~~~~~l~e~~g~~~g~~~Gr~~~~H~~~~~~~~~~~~g~lG~~~~~A~G~A~a~k~~~~~~vvv~~~GDG~~~~G 180 (233)
|++|.+++.++++++|+.+|++++++ +.|.. ..++++|++++.|+|+|+|.|+++++++++|++|||++++|
T Consensus 79 l~~G~~~~~~~~~~~g~~~G~~~~~~-s~~~~-------~~~g~~~~~ls~A~G~A~A~k~~~~~~~vv~~iGDG~~~eG 150 (581)
T PRK12315 79 MLTGRKEAFLDPDHYDDVTGYTNPEE-SEHDF-------FTVGHTSTSIALATGLAKARDLKGEKGNIIAVIGDGSLSGG 150 (581)
T ss_pred HHcCCccchhhHHHcCCCCCCCCCCC-CCCCC-------cCCCcHHHHHHHHHHHHHHHHhcCCCCeEEEEECchhhhcc
Confidence 99999999999999999999999877 33311 25688999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHcCCCEEEEEecCCcccccccc
Q 026778 181 DFHAALNFSAVTEAPVIFICRNNGWAISTPIS 212 (233)
Q Consensus 181 ~~~Ealn~A~~~~lPvvfvv~nN~~ais~~~~ 212 (233)
.+|||||+|+.|++|+||||+||+|+||+++.
T Consensus 151 ~~~EAln~A~~~k~~li~Ii~dN~~si~~~~~ 182 (581)
T PRK12315 151 LALEGLNNAAELKSNLIIIVNDNQMSIAENHG 182 (581)
T ss_pred hHHHHHHHHHhhCCCEEEEEECCCCcCCCCCc
Confidence 99999999999999999999999999999885
No 14
>TIGR00239 2oxo_dh_E1 2-oxoglutarate dehydrogenase, E1 component. The E1 ortholog from Corynebacterium glutamicum is unusual in having an N-terminal extension that resembles the dihydrolipoamide succinyltransferase (E2) component of 2-oxoglutarate dehydrogenase.
Probab=99.93 E-value=1.1e-25 Score=227.41 Aligned_cols=198 Identities=16% Similarity=0.129 Sum_probs=164.0
Q ss_pred CCCCHHHHHHHHHHHHHHhHHHHHHHHHHh-cCcccccccCcchHHHHHHHHhcc------CCCCeEecC-Cccchhhhh
Q 026778 31 VKVSEGVAIKMYNDMVTLQTMDTIFYEAQR-QGRISFYLTTSGEEAINIASAAAI------KNDDFVVPQ-YREPGVLLW 102 (233)
Q Consensus 31 ~~~s~e~l~~lyr~M~~~R~~d~~~~~l~r-~G~i~~~~~~~GqEa~~vg~~~aL------~~~D~~~~~-yR~~~~~l~ 102 (233)
..+|+|+-+++++.++.+-.||.-+...+- +.| ++..|-|+.-.++-..+ .-.|++++. ||++...|+
T Consensus 184 ~~~~~~~k~~il~~L~~ae~fE~fl~~kf~g~KR----FslEG~eslip~l~~~i~~~~~~gv~d~v~gmaHRGRlnvL~ 259 (929)
T TIGR00239 184 AQFNSEEKKRFLSRLTAAEGFERFLGAKFPGAKR----FSLEGLDALVPMLKEIIRHSVNSGTRDVVLGMAHRGRLNVLV 259 (929)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHhCCCCce----eecccHHHHHHHHHHHHHHHHHcCCCeEEeccccCCcHHHHH
Confidence 468999999999999999999988765542 222 44567777654443333 467999999 999999999
Q ss_pred --cCCCHHHHHHHHhcCCCC-CCCCCCCC-cccCC-----------CccccccccccCCCCchhhhHHHHHhhhcCC---
Q 026778 103 --RGFSMQEFANQCFGNKAD-YGKGRQMP-IHYGS-----------NKHNYFTVSSTIATQLPHAVGAAYALKMDRK--- 164 (233)
Q Consensus 103 --rG~~~~~~l~e~~g~~~g-~~~Gr~~~-~H~~~-----------~~~~~~~~~g~lG~~~~~A~G~A~a~k~~~~--- 164 (233)
+|.|++++|+|+.|+..+ .+.|++.. .|++. ....+.+..|+|+.+.|+|+|.|+|.++++.
T Consensus 260 nv~gkp~~~if~ef~g~~~~~~~~g~gdvKyHlg~~~~~~~~~~~~~~~~l~~npSHLeav~Pva~G~ArA~q~~~~~~~ 339 (929)
T TIGR00239 260 NVLGKPPEDIFSEFAGKHKSHLPDGTGDVKYHMGRFSSDFTTDGKLVHLALAFNPSHLEIVSPVVIGSTRARLDRLNDSP 339 (929)
T ss_pred HHhCCCHHHHHHHHcCCCCCcccCCCCCcCccCCCcccccccCCCcceeeecCCCcccccccchhhhHHHHHHHhcCCcc
Confidence 999999999999998876 34577776 88885 4567788999999999999999999998865
Q ss_pred ---CCeEEEEEcCCcc-chhhHHHHHHHHHHcCCCE---EEEEecCCccccccccccccCCCch--hhhcccccccc
Q 026778 165 ---DACAVTYFGDGGT-SEGDFHAALNFSAVTEAPV---IFICRNNGWAISTPISDQFRSIPSL--PCLSNILTILL 232 (233)
Q Consensus 165 ---~~vvv~~~GDG~~-~~G~~~Ealn~A~~~~lPv---vfvv~nN~~ais~~~~~q~~~~~~~--~~~~~~~~~~~ 232 (233)
+.+++|++|||++ +||.|||+||+|+.|++|+ ||||+||+|++||+.+.+.+...+. ++-.++|.+.|
T Consensus 340 ~~~~~v~v~~~GDgA~agQG~v~EaLNlA~l~~lPvGGtIfvveNNqyg~tT~~~~~~s~~~~sd~Ak~ygiP~~~V 416 (929)
T TIGR00239 340 ESTKVLAILIHGDAAFAGQGVVQETLNMSKLRGYSVGGTIHIIINNQIGFTTNPLDARSTPYCSDLAKMIQAPIFHV 416 (929)
T ss_pred cccceEEEEEeccccccCCChHHHHHHHHHhcCCCCCCEEEEEEeCCEEEEEcHHHhcCccCHHHHheecCCCEEEE
Confidence 5799999999995 8999999999999999997 9999999999999988887666654 45556777665
No 15
>COG3959 Transketolase, N-terminal subunit [Carbohydrate transport and metabolism]
Probab=99.89 E-value=2.6e-22 Score=173.64 Aligned_cols=182 Identities=15% Similarity=0.148 Sum_probs=148.3
Q ss_pred HHHHHHHHHHHHhHHHHHHHHHHhcCcccccccCcchHHHHHHHHhccC--C-------CCeEecCCccchh------hh
Q 026778 37 VAIKMYNDMVTLQTMDTIFYEAQRQGRISFYLTTSGEEAINIASAAAIK--N-------DDFVVPQYREPGV------LL 101 (233)
Q Consensus 37 ~l~~lyr~M~~~R~~d~~~~~l~r~G~i~~~~~~~GqEa~~vg~~~aL~--~-------~D~~~~~yR~~~~------~l 101 (233)
...++-+...-+|+-.-++.....+|..|--.+.. |..+|.....|+ | .|+++.+ .+|+. +.
T Consensus 6 ~~~~L~~~A~~iRr~~v~m~~~~~~GH~G~SLS~~--eILa~LYf~~m~~~p~~p~~~~RDrfiLS-KGHaa~AlYa~La 82 (243)
T COG3959 6 SVDELERIAREIRRNIVRMLANAGSGHVGGSLSVV--EILAVLYFKIMNIDPDDPKWPGRDRFILS-KGHAAPALYATLA 82 (243)
T ss_pred cHHHHHHHHHHHHHHHHHHhcccCCCCcCccchHH--HHHHHHHHHHhccCCCCCCCCCCCeEEEe-cccchHHHHHHHH
Confidence 34556666677788877777777777655444444 666777777653 3 4788888 57762 34
Q ss_pred hcCCCHHHHHHHHhcCCCCCCCCCCCCcccCC-CccccccccccCCCCchhhhHHHHHhhhcCCCCeEEEEEcCCccchh
Q 026778 102 WRGFSMQEFANQCFGNKADYGKGRQMPIHYGS-NKHNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEG 180 (233)
Q Consensus 102 ~rG~~~~~~l~e~~g~~~g~~~Gr~~~~H~~~-~~~~~~~~~g~lG~~~~~A~G~A~a~k~~~~~~vvv~~~GDG~~~~G 180 (233)
.+|+-+++-+. -|++. |...++|... +..|+...+|++|+++++|+|+|++.|+++.+..|+|++|||+++||
T Consensus 83 e~G~~p~eeL~-~~~~~-----~srL~~Hp~~~~~pgve~stGSLGqGLsvavGmAlg~kl~~~~~~VyvilGDGEl~EG 156 (243)
T COG3959 83 EKGYFPEEELE-TFRRI-----GSRLPGHPERNKTPGVEVSTGSLGQGLSVAVGMALGAKLKGSPYRVYVILGDGELDEG 156 (243)
T ss_pred HcCCCCHHHHH-HhccC-----CCcCCCCCccCCCCceeecCCcccccchHHHHHHHHHhhcCCCceEEEEecCcccccc
Confidence 58987777666 67765 4457788755 55699999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHcCC-CEEEEEecCCccccccccccccCCCchhhhccc
Q 026778 181 DFHAALNFSAVTEA-PVIFICRNNGWAISTPISDQFRSIPSLPCLSNI 227 (233)
Q Consensus 181 ~~~Ealn~A~~~~l-Pvvfvv~nN~~ais~~~~~q~~~~~~~~~~~~~ 227 (233)
++|||+.+|++++| ++|.||+-|+.|++..+++.++.+|+++||++.
T Consensus 157 ~~WEAam~Aah~~L~NLiaivD~N~~QldG~t~~i~~~~pL~~k~eAF 204 (243)
T COG3959 157 QVWEAAMTAAHYKLDNLIAIVDRNKLQLDGETEEIMPKEPLADKWEAF 204 (243)
T ss_pred cHHHHHHHHHHhccCcEEEEEecCCcccCCchhhccCcchhHHHHHhc
Confidence 99999999999999 589999999999999999999999999999863
No 16
>TIGR00232 tktlase_bact transketolase, bacterial and yeast. This model is designed to capture orthologs of bacterial transketolases. The group includes two from the yeast Saccharomyces cerevisiae but excludes dihydroxyactetone synthases (formaldehyde transketolases) from various yeasts and the even more distant mammalian transketolases. Among the family of thiamine diphosphate-dependent enzymes that includes transketolases, dihydroxyacetone synthases, pyruvate dehydrogenase E1-beta subunits, and deoxyxylulose-5-phosphate synthases, mammalian and bacterial transketolases seem not to be orthologous.
Probab=99.84 E-value=1.6e-20 Score=185.80 Aligned_cols=176 Identities=16% Similarity=0.192 Sum_probs=129.9
Q ss_pred HHHhHHHHHHHHHHhcCcccccccCcchHHHHHHHHhccC--CC-------CeEecCCccchh------hhhcCC--CHH
Q 026778 46 VTLQTMDTIFYEAQRQGRISFYLTTSGEEAINIASAAAIK--ND-------DFVVPQYREPGV------LLWRGF--SMQ 108 (233)
Q Consensus 46 ~~~R~~d~~~~~l~r~G~i~~~~~~~GqEa~~vg~~~aL~--~~-------D~~~~~yR~~~~------~l~rG~--~~~ 108 (233)
..+|..-.++......|+++...++. |...+-....|+ |+ |.++.+ .+|+. +...|. +.+
T Consensus 5 ~~iR~~~~~~~~~a~~GH~g~~ls~a--~i~~~Ly~~~l~~~p~~p~~~~rDrfvlS-~GH~~~~lYa~l~~~G~~~~~e 81 (653)
T TIGR00232 5 NAIRHLAVDAIQKAKSGHPGAPLGAA--PIAEVLWTKFLKFNPTNPKWINRDRFVLS-NGHGSMLLYSLLHLTGYDLSIE 81 (653)
T ss_pred HHHHHHHHHHHHhcCCCCccchhHHH--HHHHHHHHHhhcCCCCCCCCCCCCeEEEE-CccHHHHHHHHHHHcCCCCCHH
Confidence 34565555555555566666555543 555554444565 33 777766 46664 334685 666
Q ss_pred HHHHHHhcCCCCCCCCCCCCcccCC-CccccccccccCCCCchhhhHHHHHhhhcC----------CCCeEEEEEcCCcc
Q 026778 109 EFANQCFGNKADYGKGRQMPIHYGS-NKHNYFTVSSTIATQLPHAVGAAYALKMDR----------KDACAVTYFGDGGT 177 (233)
Q Consensus 109 ~~l~e~~g~~~g~~~Gr~~~~H~~~-~~~~~~~~~g~lG~~~~~A~G~A~a~k~~~----------~~~vvv~~~GDG~~ 177 (233)
++.. |.+. |...+.|... ...++..++|++|++++.|+|+|+|.|+.+ .+.+++|++|||++
T Consensus 82 ~L~~--fr~~-----~s~~~ghp~~~~~~gi~~~tG~lG~gl~~AvG~Ala~k~~~~~~~~~~~~~~~~~v~~~~GDG~l 154 (653)
T TIGR00232 82 DLKQ--FRQL-----HSKTPGHPEFGHTAGVEATTGPLGQGIANAVGMAIAQKTLAATFNKPGFEIVDHYTYVFVGDGCL 154 (653)
T ss_pred HHHh--cccC-----CCCCCCCCCCCCCCCeeeCCcchhccHHHHHHHHHHHHHHhhhccCCccCCcCCEEEEEEccccc
Confidence 5443 4443 2234567644 346899999999999999999999999863 47899999999999
Q ss_pred chhhHHHHHHHHHHcCCC-EEEEEecCCccccccccccccCCCchhhhcc--cccccc
Q 026778 178 SEGDFHAALNFSAVTEAP-VIFICRNNGWAISTPISDQFRSIPSLPCLSN--ILTILL 232 (233)
Q Consensus 178 ~~G~~~Ealn~A~~~~lP-vvfvv~nN~~ais~~~~~q~~~~~~~~~~~~--~~~~~~ 232 (233)
+||.+|||+++|+.|+|| +|+||+||+|+|+++++.++ .+++++|+++ |+.+.|
T Consensus 155 ~EG~~~EA~~~A~~~~L~nLi~ivd~N~~~i~~~~~~~~-~~~~~~~~~a~Gw~~~~v 211 (653)
T TIGR00232 155 QEGISYEVASLAGHLKLGKLIVLYDSNRISIDGAVDGSF-TEDVAKRFEAYGWEVLEV 211 (653)
T ss_pred cccHHHHHHHHHHHhCCCcEEEEEeCCCeeecccccccc-CccHHHHHHhcCCcEEEe
Confidence 999999999999999999 78899999999999999987 6899999886 555544
No 17
>PRK12754 transketolase; Reviewed
Probab=99.84 E-value=2.7e-20 Score=184.16 Aligned_cols=174 Identities=18% Similarity=0.228 Sum_probs=129.8
Q ss_pred HHhHHHHHHHHHHhcCcccccccCcchHHHHHHHHhccC--CC-------CeEecCCccchh------hhhcCC--CHHH
Q 026778 47 TLQTMDTIFYEAQRQGRISFYLTTSGEEAINIASAAAIK--ND-------DFVVPQYREPGV------LLWRGF--SMQE 109 (233)
Q Consensus 47 ~~R~~d~~~~~l~r~G~i~~~~~~~GqEa~~vg~~~aL~--~~-------D~~~~~yR~~~~------~l~rG~--~~~~ 109 (233)
.+|.+-.++...-..|+.|...++. |...+-....|+ |. |.++.+ .+|+. +...|. ++++
T Consensus 10 ~iR~~~~~~~~~a~sGH~G~~ls~a--~i~~~Ly~~~l~~~p~~p~w~~RDRfvlS-~GH~~~~lYa~l~~~G~~~~~e~ 86 (663)
T PRK12754 10 AIRALSMDAVQKAKSGHPGAPMGMA--DIAEVLWRDFLNHNPQNPSWADRDRFVLS-NGHGSMLIYSLLHLTGYDLPMEE 86 (663)
T ss_pred HHHHHHHHHHHhcCCCCcccchHHH--HHHHHHHHHhcCCCccCCCCCCCCeEEEe-CccHHHHHHHHHHHcCCCCCHHH
Confidence 3565555555544566666555544 555555555565 33 777776 46774 334674 7766
Q ss_pred HHHHHhcCCCCCCCCCCCCcccCC-CccccccccccCCCCchhhhHHHHHhhhcC----------CCCeEEEEEcCCccc
Q 026778 110 FANQCFGNKADYGKGRQMPIHYGS-NKHNYFTVSSTIATQLPHAVGAAYALKMDR----------KDACAVTYFGDGGTS 178 (233)
Q Consensus 110 ~l~e~~g~~~g~~~Gr~~~~H~~~-~~~~~~~~~g~lG~~~~~A~G~A~a~k~~~----------~~~vvv~~~GDG~~~ 178 (233)
+.. |.+-++ ..+.|.-. ...|+..++|++|++++.|+|+|+|.|+++ .+.+++|++|||+++
T Consensus 87 L~~--fr~~gs-----~~~gHpe~~~~pgve~stG~LGqGl~~AvG~AlA~k~~~~~~~~~~~~~~~~~v~~~~GDGel~ 159 (663)
T PRK12754 87 LKN--FRQLHS-----KTPGHPEVGYTAGVETTTGPLGQGIANAVGMAIAEKTLAAQFNRPGHDIVDHYTYAFMGDGCMM 159 (663)
T ss_pred HHH--hccCCC-----CCCCCCCCCCCCCccccCCcccchHHHHHHHHHHHHHhhhccCcccccccCCEEEEEECcchhh
Confidence 543 554432 23556543 346899999999999999999999999986 378999999999999
Q ss_pred hhhHHHHHHHHHHcCCC-EEEEEecCCccccccccccccCCCchhhhcc--ccccc
Q 026778 179 EGDFHAALNFSAVTEAP-VIFICRNNGWAISTPISDQFRSIPSLPCLSN--ILTIL 231 (233)
Q Consensus 179 ~G~~~Ealn~A~~~~lP-vvfvv~nN~~ais~~~~~q~~~~~~~~~~~~--~~~~~ 231 (233)
||.+|||+++|++|+|| +||||+||+|+|+++++.++ .+++++|+++ |+.|.
T Consensus 160 EG~~~EA~~~A~~~kL~nLi~ivD~N~~~idg~~~~~~-~~~~~~r~~a~Gw~vi~ 214 (663)
T PRK12754 160 EGISHEVCSLAGTLKLGKLIAFYDDNGISIDGHVEGWF-TDDTAMRFEAYGWHVIR 214 (663)
T ss_pred chHHHHHHHHHHHhCCCCEEEEEEcCCCccCcchhhcc-CccHHHHHHhcCCeEEe
Confidence 99999999999999998 68999999999999999987 6899999886 55554
No 18
>cd02011 TPP_PK Thiamine pyrophosphate (TPP) family, Phosphoketolase (PK) subfamily, TPP-binding module; PK catalyzes the conversion of D-xylulose 5-phosphate and phosphate to acetyl phosphate, D-glyceraldehyde-3-phosphate and H2O. This enzyme requires divalent magnesium ions and TPP for activity.
Probab=99.82 E-value=2.6e-20 Score=162.73 Aligned_cols=145 Identities=19% Similarity=0.265 Sum_probs=121.9
Q ss_pred CcchHHHHHHHHhccCC-CCeEecCCccchhhhhcCCCHHHHHHHHhcCCCCCCCCCCCCcccCCCccccccccccCCCC
Q 026778 70 TSGEEAINIASAAAIKN-DDFVVPQYREPGVLLWRGFSMQEFANQCFGNKADYGKGRQMPIHYGSNKHNYFTVSSTIATQ 148 (233)
Q Consensus 70 ~~GqEa~~vg~~~aL~~-~D~~~~~yR~~~~~l~rG~~~~~~l~e~~g~~~g~~~Gr~~~~H~~~~~~~~~~~~g~lG~~ 148 (233)
+.||+++++.+.+.|.. .|++||.||.+. .| +++++.++ + ...| .++|......|+...+|+||.+
T Consensus 1 g~GHg~~~l~a~l~l~G~~~~~~p~~~~~~----~g--l~~lf~qf-s----~~gg--~psH~~~~tpGi~~~~G~LG~g 67 (227)
T cd02011 1 GPGHGGPAVLANLYLEGSYSEFYPEISQDE----EG--MRKLFKQF-S----FPGG--IPSHAAPETPGSIHEGGELGYS 67 (227)
T ss_pred CCChHHHHHHHHHHhcCCCccccccccccH----HH--HHHHHHhc-C----CCCC--CCCCCcccCCCeeecccchhhH
Confidence 36999999988888987 599999999876 22 36677775 2 2233 7889988888999999999999
Q ss_pred chhhhHHHHHhhhcCCCCeEEEEEcCCccchhhH---HHHHHHHHHcCCC-EEEEEecCCcccccccccc-ccCCCchhh
Q 026778 149 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDF---HAALNFSAVTEAP-VIFICRNNGWAISTPISDQ-FRSIPSLPC 223 (233)
Q Consensus 149 ~~~A~G~A~a~k~~~~~~vvv~~~GDG~~~~G~~---~Ealn~A~~~~lP-vvfvv~nN~~ais~~~~~q-~~~~~~~~~ 223 (233)
+++|+|+| +++.+.+|+|++|||++++|.+ ||+.+++..+++. |+.|++||+|+|++|+..+ ++.++++++
T Consensus 68 Ls~A~G~a----~d~~d~iv~~vvGDGE~eeG~lA~~W~a~~~~~~~~~~~vLpIld~Ng~~i~~pt~~~~~~~e~l~~~ 143 (227)
T cd02011 68 LSHAYGAV----FDNPDLIVACVVGDGEAETGPLATSWHSNKFLNPATDGAVLPILHLNGYKISNPTILARISHEELEAL 143 (227)
T ss_pred HHHHHHhh----hcCCCcEEEEEECcCHHHHHhHHHHHHhhhhhcccccCCeEEEEEcCCCcccCCccccccCchhHHHH
Confidence 99999997 4678899999999999999997 9999999999995 7888999999999999965 678899999
Q ss_pred hcc--ccccc
Q 026778 224 LSN--ILTIL 231 (233)
Q Consensus 224 ~~~--~~~~~ 231 (233)
+++ |+.+.
T Consensus 144 ~~~yG~~~~~ 153 (227)
T cd02011 144 FRGYGYEPYF 153 (227)
T ss_pred HHhCCCceEE
Confidence 987 44443
No 19
>PRK12753 transketolase; Reviewed
Probab=99.82 E-value=1.2e-19 Score=179.87 Aligned_cols=169 Identities=17% Similarity=0.196 Sum_probs=122.3
Q ss_pred HhHHHHHHHHHHhcCcccccccCcchHHHHHHHHhccC--C-------CCeEecCCccchh------hhhcC--CCHHHH
Q 026778 48 LQTMDTIFYEAQRQGRISFYLTTSGEEAINIASAAAIK--N-------DDFVVPQYREPGV------LLWRG--FSMQEF 110 (233)
Q Consensus 48 ~R~~d~~~~~l~r~G~i~~~~~~~GqEa~~vg~~~aL~--~-------~D~~~~~yR~~~~------~l~rG--~~~~~~ 110 (233)
+|.+-.++......|+++...++. |.+.+.....|+ | .|.++.+ .+|+. +...| ++.+++
T Consensus 11 iR~~~~~~~~~a~~GH~g~~ls~~--~i~~~Ly~~~l~~~p~~p~~~~rDrfvls-~GH~~~~lYa~l~~~G~~~~~e~L 87 (663)
T PRK12753 11 IRALSMDAVQKANSGHPGAPMGMA--DIAEVLWRDFLKHNPTNPTWYDRDRFILS-NGHASMLLYSLLHLTGYDLPIEEL 87 (663)
T ss_pred HHHHHHHHHHhcCCCCchhhHHHH--HHHHHHHHHHhCCCccCCCCCCCCcEEEe-cccHHHHHHHHHHHhCCCCCHHHH
Confidence 455444444443456665544443 444444444553 3 3776666 46664 44567 455554
Q ss_pred HHHHhcCCCCCCCCCCCCcccCC-CccccccccccCCCCchhhhHHHHHhhhcCC----------CCeEEEEEcCCccch
Q 026778 111 ANQCFGNKADYGKGRQMPIHYGS-NKHNYFTVSSTIATQLPHAVGAAYALKMDRK----------DACAVTYFGDGGTSE 179 (233)
Q Consensus 111 l~e~~g~~~g~~~Gr~~~~H~~~-~~~~~~~~~g~lG~~~~~A~G~A~a~k~~~~----------~~vvv~~~GDG~~~~ 179 (233)
.. |.+.++ ..+.|.-. ...++..++|++|++++.|+|+|+|.|+++. +.+|+|++|||+++|
T Consensus 88 ~~--fr~~~s-----~~~ghp~~~~~pgve~~tG~lG~gl~~AvG~A~A~k~~~~~~~~~~~~~~~~~v~~~~GDGel~E 160 (663)
T PRK12753 88 KN--FRQLHS-----KTPGHPEIGYTPGVETTTGPLGQGLANAVGLAIAERTLAAQFNRPGHEIVDHYTYVFMGDGCLME 160 (663)
T ss_pred HH--hccCCC-----CCCCCCCCCCCCCcccCCCcccccHHHHHHHHHHHHHhhhhcCCccccccCCEEEEEECcCcccc
Confidence 32 544332 23456533 3568899999999999999999999998753 689999999999999
Q ss_pred hhHHHHHHHHHHcCCC-EEEEEecCCccccccccccccCCCchhhhccc
Q 026778 180 GDFHAALNFSAVTEAP-VIFICRNNGWAISTPISDQFRSIPSLPCLSNI 227 (233)
Q Consensus 180 G~~~Ealn~A~~~~lP-vvfvv~nN~~ais~~~~~q~~~~~~~~~~~~~ 227 (233)
|.+|||+|+|+.|+|| +|+||+||+|+|+++++.++ .+++.+++++.
T Consensus 161 G~~~EA~~~A~~~kL~nLi~ivd~N~~~i~~~~~~~~-~~~~~~~f~a~ 208 (663)
T PRK12753 161 GISHEVCSLAGTLGLGKLIGFYDHNGISIDGETEGWF-TDDTAKRFEAY 208 (663)
T ss_pred HHHHHHHHHHHHHCCCCEEEEEECCCCcCCCChhhhc-ChhHHHHHHHc
Confidence 9999999999999997 78899999999999999876 68888888763
No 20
>cd02007 TPP_DXS Thiamine pyrophosphate (TPP) family, DXS subfamily, TPP-binding module; 1-Deoxy-D-xylulose-5-phosphate synthase (DXS) is a regulatory enzyme of the mevalonate-independent pathway involved in terpenoid biosynthesis. Terpeniods are plant natural products with important pharmaceutical activity. DXS catalyzes a transketolase-type condensation of pyruvate with D-glyceraldehyde-3-phosphate to form 1-deoxy-D-xylulose-5-phosphate (DXP) and carbon dioxide. The formation of DXP leads to the formation of the terpene precursor IPP (isopentyl diphosphate) and to the formation of thiamine (vitamin B1) and pyridoxal (vitamin B6).
Probab=99.81 E-value=1.8e-19 Score=153.96 Aligned_cols=117 Identities=18% Similarity=0.193 Sum_probs=89.9
Q ss_pred CCCeEecCCccchh---hhhcCCCHHHHHHHHhcCCCCCCCCCCCCcccCCCc-cccccccccCCCCchhhhHHHHHhhh
Q 026778 86 NDDFVVPQYREPGV---LLWRGFSMQEFANQCFGNKADYGKGRQMPIHYGSNK-HNYFTVSSTIATQLPHAVGAAYALKM 161 (233)
Q Consensus 86 ~~D~~~~~yR~~~~---~l~rG~~~~~~l~e~~g~~~g~~~Gr~~~~H~~~~~-~~~~~~~g~lG~~~~~A~G~A~a~k~ 161 (233)
+.|.++.+ .+|+. +...|. .+-+.+ |.+. |. .+.|..... .++...+|++|+++|.|+|+|+|.|+
T Consensus 24 ~rDr~ils-~gH~~~~~~~~~g~--~~~l~~-~~~~-----~~-~~g~p~~~~~~~~~~~~G~lG~gl~~A~G~Ala~k~ 93 (195)
T cd02007 24 PKDKIIWD-VGHQAYPHKILTGR--RDQFHT-LRQY-----GG-LSGFTKRSESEYDAFGTGHSSTSISAALGMAVARDL 93 (195)
T ss_pred CCCeEEEe-cccHHHHHHHHHCC--HHHHhh-hhcC-----CC-CCCCCcCCCCCCceECCCchhhhHHHHHHHHHHHHH
Confidence 56777776 35553 333454 222222 3332 11 344533222 45667899999999999999999999
Q ss_pred cCCCCeEEEEEcCCccchhhHHHHHHHHHHcCCCEEEEEecCCcccccccc
Q 026778 162 DRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPIS 212 (233)
Q Consensus 162 ~~~~~vvv~~~GDG~~~~G~~~Ealn~A~~~~lPvvfvv~nN~~ais~~~~ 212 (233)
++++++++|++|||+++||.+|||+++|+.+++|+++||+||+|++++++.
T Consensus 94 ~~~~~~vv~~~GDG~~~eG~~~Eal~~A~~~~~~li~vvdnN~~~~~~~~~ 144 (195)
T cd02007 94 KGKKRKVIAVIGDGALTGGMAFEALNNAGYLKSNMIVILNDNEMSISPNVG 144 (195)
T ss_pred hCCCCeEEEEEcccccccChHHHHHHHHHHhCCCEEEEEECCCcccCCCCC
Confidence 999999999999999999999999999999999999999999999998865
No 21
>PLN02790 transketolase
Probab=99.81 E-value=2.1e-19 Score=177.87 Aligned_cols=156 Identities=19% Similarity=0.216 Sum_probs=115.1
Q ss_pred hcCcccccccCcchHHHHHHHHhccC---------CCCeEecCCccchh------hhhcCC---CHHHHHHHHhcCCCCC
Q 026778 60 RQGRISFYLTTSGEEAINIASAAAIK---------NDDFVVPQYREPGV------LLWRGF---SMQEFANQCFGNKADY 121 (233)
Q Consensus 60 r~G~i~~~~~~~GqEa~~vg~~~aL~---------~~D~~~~~yR~~~~------~l~rG~---~~~~~l~e~~g~~~g~ 121 (233)
..|.++.-.++. |.+.+-....|+ +.|.++.+ -+|+. +...|. +.+++.. |.+.++.
T Consensus 13 ~~GH~g~~ls~~--ei~~~L~~~~~~~~~~~p~~~~rDrfvls-~GH~~~~lYa~l~~~G~~~~~~~~l~~--~r~~~s~ 87 (654)
T PLN02790 13 NSGHPGLPMGCA--PMGHVLYDEVMKYNPKNPYWFNRDRFVLS-AGHGCMLQYALLHLAGYDSVQMEDLKQ--FRQWGSR 87 (654)
T ss_pred CCCcCCchhhHH--HHHHHHHHhhcccCCCCCCCCCCCEEEEe-CcchHHHHHHHHHHcCCCCCCHHHHHH--hccCCCC
Confidence 456665554443 555443334444 45888776 35553 556776 5655432 5554332
Q ss_pred CCCCCCCcccCC-CccccccccccCCCCchhhhHHHHHhhh-----cCC-----CCeEEEEEcCCccchhhHHHHHHHHH
Q 026778 122 GKGRQMPIHYGS-NKHNYFTVSSTIATQLPHAVGAAYALKM-----DRK-----DACAVTYFGDGGTSEGDFHAALNFSA 190 (233)
Q Consensus 122 ~~Gr~~~~H~~~-~~~~~~~~~g~lG~~~~~A~G~A~a~k~-----~~~-----~~vvv~~~GDG~~~~G~~~Ealn~A~ 190 (233)
.+.|.-. ...++...+|++|++++.|+|+|+|.|+ +++ +.+|+|++|||+++||.+|||+|+|+
T Consensus 88 -----~~ghp~~~~~pgi~~~tG~lG~gl~~A~G~A~A~k~~~~~~~~~~~~~~~~~v~~~~GDG~l~eG~~~EAl~~A~ 162 (654)
T PLN02790 88 -----TPGHPENFETPGIEVTTGPLGQGIANAVGLALAEKHLAARFNKPDHKIVDHYTYCILGDGCQMEGISNEAASLAG 162 (654)
T ss_pred -----CCCCCCCCCCCCccccCCchhchHHHHHHHHHHHHHHHHHhCCCcccccCCEEEEEECcCcccchHHHHHHHHHH
Confidence 2346433 3468899999999999999999999995 332 68999999999999999999999999
Q ss_pred HcCCC-EEEEEecCCccccccccccccCCCchhhhcc
Q 026778 191 VTEAP-VIFICRNNGWAISTPISDQFRSIPSLPCLSN 226 (233)
Q Consensus 191 ~~~lP-vvfvv~nN~~ais~~~~~q~~~~~~~~~~~~ 226 (233)
.|+|| +|+||+||+|+|+++++.+. .+++.+++++
T Consensus 163 ~~~L~nli~i~d~N~~~i~~~~~~~~-~~~~~~~f~a 198 (654)
T PLN02790 163 HWGLGKLIVLYDDNHISIDGDTEIAF-TEDVDKRYEA 198 (654)
T ss_pred HhCCCCEEEEEecCCccccCCccccc-chhHHHHHHH
Confidence 99998 89999999999999998765 6778887775
No 22
>TIGR00204 dxs 1-deoxy-D-xylulose-5-phosphate synthase. DXP synthase is a thiamine diphosphate-dependent enzyme related to transketolase and the pyruvate dehydrogenase E1-beta subunit. By an acyloin condensation of pyruvate with glyceraldehyde 3-phosphate, it produces 1-deoxy-D-xylulose 5-phosphate, a precursor of thiamine diphosphate (TPP), pyridoxal phosphate, and the isoprenoid building block isopentenyl diphosphate (IPP).
Probab=99.81 E-value=1.4e-19 Score=178.17 Aligned_cols=173 Identities=18% Similarity=0.134 Sum_probs=121.6
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHhHHHHHHHHHHhcCcccccccCcchHHHHHHHHhccC-CCCeEecC--Cccchhhhhc
Q 026778 27 DSSFVKVSEGVAIKMYNDMVTLQTMDTIFYEAQRQGRISFYLTTSGEEAINIASAAAIK-NDDFVVPQ--YREPGVLLWR 103 (233)
Q Consensus 27 ~~~~~~~s~e~l~~lyr~M~~~R~~d~~~~~l~r~G~i~~~~~~~GqEa~~vg~~~aL~-~~D~~~~~--yR~~~~~l~r 103 (233)
|.+.+.++.++|.++-.. +|.+=..+.. ...|.++.-.++. |.+ +++...++ +.|.++.+ |...++.+.+
T Consensus 7 p~dl~~l~~~~l~~la~~---iR~~~i~~~~-~~~GH~g~~ls~v--el~-~aL~~~~~~~rDr~i~s~GH~~Y~~~~~~ 79 (617)
T TIGR00204 7 PQELRLLSIDELEKLCDE---LRRYLLESVS-ASGGHLASGLGTV--ELT-VALHYVFNTPKDQFIWDVGHQAYPHKLLT 79 (617)
T ss_pred HHHHhhCCHHHHHHHHHH---HHHHHHHHHh-ccCCCcCcchhHH--HHH-HHHHhhCCCCCCcEEEecchHHHHHHHHh
Confidence 345567777776665443 3554444433 2456655444443 444 34455666 67988876 3333455667
Q ss_pred CCCHHHHHHHHhcCCCCCCCCCCCCcccCCCccccc-cccccCCCCchhhhHHHHHhhhcCCCCeEEEEEcCCccchhhH
Q 026778 104 GFSMQEFANQCFGNKADYGKGRQMPIHYGSNKHNYF-TVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDF 182 (233)
Q Consensus 104 G~~~~~~l~e~~g~~~g~~~Gr~~~~H~~~~~~~~~-~~~g~lG~~~~~A~G~A~a~k~~~~~~vvv~~~GDG~~~~G~~ 182 (233)
|. . +-|.. +.+. |. .+.|....+.++. ..+|++|++++.|+|+|+|.|+++++.+++|++|||++++|.+
T Consensus 80 G~-~-~~l~~-~r~~-----g~-l~g~p~~~e~~~d~~~~G~~g~~ls~a~G~A~a~~~~~~~~~v~~~~GDG~~~eG~~ 150 (617)
T TIGR00204 80 GR-R-EKFST-LRQK-----KG-LHGFPKRSESEYDVFSAGHSSTSISAGLGIAVAAEKKGADRKTVCVIGDGAITAGMA 150 (617)
T ss_pred Cc-H-HHhcc-hhhc-----CC-cCCCCcCCCCCCCccCCCchHhHHHHHHHHHHHHHhhCCCCEEEEEECCcccccccH
Confidence 75 2 22321 2222 21 4445444344444 3789999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCCEEEEEecCCccccccccccc
Q 026778 183 HAALNFSAVTEAPVIFICRNNGWAISTPISDQF 215 (233)
Q Consensus 183 ~Ealn~A~~~~lPvvfvv~nN~~ais~~~~~q~ 215 (233)
|||+|+|+.|+||+||||+||+|+|++++..++
T Consensus 151 ~Ea~~~a~~~~l~~i~ii~~N~~~i~~~~~~~~ 183 (617)
T TIGR00204 151 FEALNHAGDLKTDMIVILNDNEMSISENVGALS 183 (617)
T ss_pred HHHHHHHHhcCCCEEEEEECCCcccCCCchHHH
Confidence 999999999999999999999999999987553
No 23
>PTZ00089 transketolase; Provisional
Probab=99.80 E-value=7.5e-19 Score=174.13 Aligned_cols=169 Identities=18% Similarity=0.194 Sum_probs=119.4
Q ss_pred HhHHHHHHHHHHhcCcccccccCcchHHHHHHHHhccC---------CCCeEecCCccchh------hhhcCC--CHHHH
Q 026778 48 LQTMDTIFYEAQRQGRISFYLTTSGEEAINIASAAAIK---------NDDFVVPQYREPGV------LLWRGF--SMQEF 110 (233)
Q Consensus 48 ~R~~d~~~~~l~r~G~i~~~~~~~GqEa~~vg~~~aL~---------~~D~~~~~yR~~~~------~l~rG~--~~~~~ 110 (233)
+|.+-..+......|+++.-.++. |.+.+-....|+ +.|.++.+ .+|+. +...|. +.+++
T Consensus 13 iR~~~~~~~~~a~~GH~g~~ls~~--ei~~~L~~~~l~~~~~~~~~~~rDr~vls-~GH~~~~lYa~l~l~G~~~~~~~l 89 (661)
T PTZ00089 13 IRCLSADLVQKANSGHPGAPMGMA--PIAHILWSEVMKYNPKDPRWINRDRFVLS-NGHASALLYSMLHLTGYDLSMEDL 89 (661)
T ss_pred HHHHHHHHHHhcCCCCcchhhHHH--HHHHHHHHHhhcCCCcCCCCCCCCEEEEe-CcchHHHHHHHHHHcCCCCCHHHH
Confidence 455444444333456655544443 444433323554 34887666 35553 556774 55553
Q ss_pred HHHHhcCCCCCCCCCCCCcccCC-CccccccccccCCCCchhhhHHHHHhhhcCC----------CCeEEEEEcCCccch
Q 026778 111 ANQCFGNKADYGKGRQMPIHYGS-NKHNYFTVSSTIATQLPHAVGAAYALKMDRK----------DACAVTYFGDGGTSE 179 (233)
Q Consensus 111 l~e~~g~~~g~~~Gr~~~~H~~~-~~~~~~~~~g~lG~~~~~A~G~A~a~k~~~~----------~~vvv~~~GDG~~~~ 179 (233)
.. |.+.++. .+.|.-. ...++...+|++|++++.|+|+|+|.|+++. +..|+|++|||+++|
T Consensus 90 -~~-fr~~~s~-----~~ghp~~~~~~gv~~~tG~lG~gls~AvG~A~a~k~~~~~~~~~~~~~~~~~v~~v~GDG~l~e 162 (661)
T PTZ00089 90 -KN-FRQLGSR-----TPGHPERHITPGVEVTTGPLGQGIANAVGLAIAEKHLAAKFNRPGHPIFDNYVYVICGDGCLQE 162 (661)
T ss_pred -Hh-cCCCCCC-----CCCCCCCCCCCCcccCCcchhhhHHHHHHHHHHHHHHhhhccCccccCcCCEEEEEECccchhh
Confidence 32 4443332 2345432 2457888999999999999999999999754 789999999999999
Q ss_pred hhHHHHHHHHHHcCCC-EEEEEecCCccccccccccccCCCchhhhccc
Q 026778 180 GDFHAALNFSAVTEAP-VIFICRNNGWAISTPISDQFRSIPSLPCLSNI 227 (233)
Q Consensus 180 G~~~Ealn~A~~~~lP-vvfvv~nN~~ais~~~~~q~~~~~~~~~~~~~ 227 (233)
|.+|||+|+|+.|+|| +|+||+||+|+|+++++.+. .+++.+++++.
T Consensus 163 G~~~EAl~~A~~~~L~nLi~i~d~N~~~i~~~~~~~~-~~~~~~~f~a~ 210 (661)
T PTZ00089 163 GVSQEALSLAGHLGLEKLIVLYDDNKITIDGNTDLSF-TEDVEKKYEAY 210 (661)
T ss_pred HHHHHHHHHHHHhCCCCEEEEEECCCcccccCccccc-CccHHHHHHhc
Confidence 9999999999999997 78999999999999998764 67888887653
No 24
>cd02017 TPP_E1_EcPDC_like Thiamine pyrophosphate (TPP) family, E1 of E. coli PDC-like subfamily, TPP-binding module; composed of proteins similar to the E1 component of the Escherichia coli pyruvate dehydrogenase multienzyme complex (PDC). PDC catalyzes the oxidative decarboxylation of pyruvate and the subsequent acetylation of coenzyme A to acetyl-CoA. The E1 component of PDC catalyzes the first step of the multistep process, using TPP and a divalent cation as cofactors. E. coli PDC is a homodimeric enzyme.
Probab=99.78 E-value=3.5e-18 Score=159.05 Aligned_cols=157 Identities=13% Similarity=0.134 Sum_probs=115.3
Q ss_pred CcccccccCcchHHHHHHHHhccCC------CCeEecCCccchh------hhhcCC-CHHHHHHHHhcCCCCCCCCCCCC
Q 026778 62 GRISFYLTTSGEEAINIASAAAIKN------DDFVVPQYREPGV------LLWRGF-SMQEFANQCFGNKADYGKGRQMP 128 (233)
Q Consensus 62 G~i~~~~~~~GqEa~~vg~~~aL~~------~D~~~~~yR~~~~------~l~rG~-~~~~~l~e~~g~~~g~~~Gr~~~ 128 (233)
|.++...++. |.+.+.....|+. .|.|+ + .+|+. +..+|. |.++ +.. |.+.++. ...+
T Consensus 31 GH~G~slS~a--dI~~aLy~~~l~~~p~~~~RDRvl-S-kGHas~~lYA~L~l~G~~~~ed-L~~-fr~~gs~---p~l~ 101 (386)
T cd02017 31 GHIATFASAA--TLYEVGFNHFFRARGEGGGGDLVY-F-QGHASPGIYARAFLEGRLTEEQ-LDN-FRQEVGG---GGLS 101 (386)
T ss_pred CCCCcchhHH--HHHHHHHHHhcCCCCCCCCCCEEE-e-CCcccHHHHHHHHHcCCCCHHH-HHh-hccCCCC---CCCC
Confidence 4444444443 4544444456774 68855 4 67764 445784 5555 443 4443221 1233
Q ss_pred cccCC--CccccccccccCCCCchhhhHHHHHhhh-------cCCCCeEEEEEcCCccchhhHHHHHHHHHHcCC-CEEE
Q 026778 129 IHYGS--NKHNYFTVSSTIATQLPHAVGAAYALKM-------DRKDACAVTYFGDGGTSEGDFHAALNFSAVTEA-PVIF 198 (233)
Q Consensus 129 ~H~~~--~~~~~~~~~g~lG~~~~~A~G~A~a~k~-------~~~~~vvv~~~GDG~~~~G~~~Ealn~A~~~~l-Pvvf 198 (233)
.|... ...++..++|++|++++.|+|+|+|.|+ ++.+..|+|++|||+++||.+|||+++|+.++| ++|+
T Consensus 102 g~p~~~~~~~gve~sTGSLGqGLs~AvGmAla~r~l~a~~~~~~~~~rvyvllGDGEl~EG~vwEA~~~Ag~~kL~NLiv 181 (386)
T cd02017 102 SYPHPWLMPDFWEFPTVSMGLGPIQAIYQARFNRYLEDRGLKDTSDQKVWAFLGDGEMDEPESLGAIGLAAREKLDNLIF 181 (386)
T ss_pred CCCCCCCCCCCeeeCCchHHHHHHHHHHHHHHHHHHHhhhccCCCCCeEEEEEcccccccHHHHHHHHHHHHhCCCCEEE
Confidence 34322 1235888999999999999999999998 567889999999999999999999999999999 6999
Q ss_pred EEecCCcccccccccc-ccCCCchhhhccc
Q 026778 199 ICRNNGWAISTPISDQ-FRSIPSLPCLSNI 227 (233)
Q Consensus 199 vv~nN~~ais~~~~~q-~~~~~~~~~~~~~ 227 (233)
|+++|+++|+.++..+ +..+++++||.+.
T Consensus 182 IvD~N~~qidG~t~~v~~~~e~l~~kf~Af 211 (386)
T cd02017 182 VVNCNLQRLDGPVRGNGKIIQELEGIFRGA 211 (386)
T ss_pred EEECCCCccCCcccccccCchhHHHHHHhc
Confidence 9999999999999987 4789999999763
No 25
>PRK05444 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=99.78 E-value=1.2e-18 Score=170.21 Aligned_cols=173 Identities=16% Similarity=0.123 Sum_probs=123.8
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHHHhHHHHHHHHHHhcCcccccccCcchHHHHHHHHhccC-CCCeEecCCccchh---h
Q 026778 25 FPDSSFVKVSEGVAIKMYNDMVTLQTMDTIFYEAQRQGRISFYLTTSGEEAINIASAAAIK-NDDFVVPQYREPGV---L 100 (233)
Q Consensus 25 ~~~~~~~~~s~e~l~~lyr~M~~~R~~d~~~~~l~r~G~i~~~~~~~GqEa~~vg~~~aL~-~~D~~~~~yR~~~~---~ 100 (233)
-.|.+.+.++.++|.++- ..+|.+-.++... ..|+++.-.++. |.+.+ +...++ +.|.++.+ .+|+. +
T Consensus 11 ~~~~~~~~~~~~~l~~~a---~~iR~~~~~~~~~-~~gH~g~~ls~~--~i~~~-L~~~~~~~rDr~ils-~GH~~y~~~ 82 (580)
T PRK05444 11 NSPADLKKLSEEELPQLA---DEIREFLIDVVSK-TGGHLGSNLGVV--ELTVA-LHYVFDTPKDRIIWD-VGHQAYPHK 82 (580)
T ss_pred CCHHHHhcCCHHHHHHHH---HHHHHHHHHHHHh-cCCCcCCCccHH--HHHHH-HHHhcCCCCccEEEe-ccHHHHHHH
Confidence 344566778877766553 3346555555543 466666655554 55443 334554 56888877 46653 4
Q ss_pred hhcCCCHHHHHHHHhcCCCCCCCCCCCCcccCCCc-cccccccccCCCCchhhhHHHHHhhhc-CCCCeEEEEEcCCccc
Q 026778 101 LWRGFSMQEFANQCFGNKADYGKGRQMPIHYGSNK-HNYFTVSSTIATQLPHAVGAAYALKMD-RKDACAVTYFGDGGTS 178 (233)
Q Consensus 101 l~rG~~~~~~l~e~~g~~~g~~~Gr~~~~H~~~~~-~~~~~~~g~lG~~~~~A~G~A~a~k~~-~~~~vvv~~~GDG~~~ 178 (233)
...|. .++ +. -|.+.++ .+.|..... .++..++|++|+++|.|+|+|+|.|++ +.++.++|++|||+++
T Consensus 83 ~~~g~-~~~-l~-~~~~~~s------~~g~p~~~~~~~~~~~~G~lG~gl~~AvG~A~a~~~~~~~~~~v~~i~GDG~l~ 153 (580)
T PRK05444 83 ILTGR-RDR-FD-TLRQKGG------LSGFPKRSESEYDTFGAGHSSTSISAALGMAKARDLKGGEDRKVVAVIGDGALT 153 (580)
T ss_pred HHhCc-HHH-hc-CcccCCC------CCCCCCCCCCCCeeECCChHHHHHHHHHHHHHHHHhhCCCCCeEEEEEcccccc
Confidence 44564 222 22 1333221 235654433 678889999999999999999999998 5889999999999999
Q ss_pred hhhHHHHHHHHHHcCCCEEEEEecCCcccccccccc
Q 026778 179 EGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQ 214 (233)
Q Consensus 179 ~G~~~Ealn~A~~~~lPvvfvv~nN~~ais~~~~~q 214 (233)
||.+|||+++|+.+++|+++|++||+|+|++++..+
T Consensus 154 eG~~~Eal~~A~~~~~nli~IvdnN~~~i~~~~~~~ 189 (580)
T PRK05444 154 GGMAFEALNNAGDLKSDLIVILNDNEMSISPNVGAL 189 (580)
T ss_pred cCHHHHHHHHHHhhCCCEEEEEECCCCcCCCcchhh
Confidence 999999999999999999999999999999988655
No 26
>cd02012 TPP_TK Thiamine pyrophosphate (TPP) family, Transketolase (TK) subfamily, TPP-binding module; TK catalyzes the transfer of a two-carbon unit from ketose phosphates to aldose phosphates. In heterotrophic organisms, TK provides a link between glycolysis and the pentose phosphate pathway and provides precursors for nucleotide, aromatic amino acid and vitamin biosynthesis. In addition, the enzyme plays a central role in the Calvin cycle in plants. Typically, TKs are homodimers. They require TPP and divalent cations, such as magnesium ions, for activity.
Probab=99.77 E-value=4.9e-18 Score=150.13 Aligned_cols=157 Identities=20% Similarity=0.238 Sum_probs=113.4
Q ss_pred hcCcccccccCcchHHHHHHHHhccC---------CCCeEecCCccchh------hhhcCC-CHHHHHHHHhcCCCCCCC
Q 026778 60 RQGRISFYLTTSGEEAINIASAAAIK---------NDDFVVPQYREPGV------LLWRGF-SMQEFANQCFGNKADYGK 123 (233)
Q Consensus 60 r~G~i~~~~~~~GqEa~~vg~~~aL~---------~~D~~~~~yR~~~~------~l~rG~-~~~~~l~e~~g~~~g~~~ 123 (233)
..|.++...++. |...+-....|+ +.|.++.+ .+|+. +...|. +.+++. . |...+
T Consensus 15 ~~gh~g~~~s~~--~i~~~L~~~~~~~~~~~~~~~~rd~~v~s-~gH~~~~~ya~l~~~g~~~~~~l~-~-~~~~g---- 85 (255)
T cd02012 15 GSGHPGGSLSAA--DILAVLYFKVLKYDPADPKWPNRDRFVLS-KGHASPALYAVLALAGYLPEEDLK-T-FRQLG---- 85 (255)
T ss_pred CCCCcCccHHHH--HHHHHHHHHHhCcCCcCCCCCCCCeEEEc-CCcHHHHHHHHHHHcCCCCHHHHH-H-hcccC----
Confidence 345554444333 555444444443 23655544 34553 334565 444433 2 44332
Q ss_pred CCCCCcccCCC-ccccccccccCCCCchhhhHHHHHhhhcCCCCeEEEEEcCCccchhhHHHHHHHHHHcCCC-EEEEEe
Q 026778 124 GRQMPIHYGSN-KHNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAP-VIFICR 201 (233)
Q Consensus 124 Gr~~~~H~~~~-~~~~~~~~g~lG~~~~~A~G~A~a~k~~~~~~vvv~~~GDG~~~~G~~~Ealn~A~~~~lP-vvfvv~ 201 (233)
...+.|.... ..++...+|++|.++|.|+|+|+|.|+.+.++.|+|++|||++++|.+||++++|+.++|| +++|++
T Consensus 86 -s~l~gh~~~~~~~g~~~~~GslG~gl~~avG~Ala~~~~~~~~~v~~i~GDG~~~~G~~~eal~~a~~~~l~~li~vvd 164 (255)
T cd02012 86 -SRLPGHPEYGLTPGVEVTTGSLGQGLSVAVGMALAEKLLGFDYRVYVLLGDGELQEGSVWEAASFAGHYKLDNLIAIVD 164 (255)
T ss_pred -CCCCCCCCCCCCCCeeeCCcchhhHHHHHHHHHHHHHHhCCCCEEEEEECcccccccHHHHHHHHHHHcCCCcEEEEEE
Confidence 2345565432 3488889999999999999999999999999999999999999999999999999999997 899999
Q ss_pred cCCccccccccccccCCCchhhhcc
Q 026778 202 NNGWAISTPISDQFRSIPSLPCLSN 226 (233)
Q Consensus 202 nN~~ais~~~~~q~~~~~~~~~~~~ 226 (233)
||+|+++.+.......+++++++++
T Consensus 165 nN~~~~~~~~~~~~~~~~~~~~~~a 189 (255)
T cd02012 165 SNRIQIDGPTDDILFTEDLAKKFEA 189 (255)
T ss_pred CCCccccCcHhhccCchhHHHHHHH
Confidence 9999999998887778888887765
No 27
>PF00456 Transketolase_N: Transketolase, thiamine diphosphate binding domain; InterPro: IPR005474 Transketolase 2.2.1.1 from EC (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources [, ] show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Pichia angusta (Yeast) (Hansenula polymorpha), there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) 2.2.1.3 from EC (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates. 1-deoxyxylulose-5-phosphate synthase (DXP synthase) [] is an enzyme so far found in bacteria (gene dxs) and plants (gene CLA1) which catalyzes the thiamine pyrophosphoate-dependent acyloin condensation reaction between carbon atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (dxp), a precursor in the biosynthetic pathway to isoprenoids, thiamine (vitamin B1), and pyridoxol (vitamin B6). DXP synthase is evolutionary related to TK. The N-terminal section, contains a histidine residue which appears to function in proton transfer during catalysis []. In the central section there are conserved acidic residues that are part of the active cleft and may participate in substrate-binding []. This family includes transketolase enzymes 2.2.1.1 from EC and also partially matches to 2-oxoisovalerate dehydrogenase beta subunit P37941 from SWISSPROT 1.2.4.4 from EC. Both these enzymes utilise thiamine pyrophosphate as a cofactor, suggesting there may be common aspects in their mechanism of catalysis.; PDB: 3M49_B 1NGS_B 1TKA_A 1TRK_B 1TKB_A 1GPU_B 1AY0_B 1TKC_B 3HYL_A 3RIM_A ....
Probab=99.75 E-value=2.6e-18 Score=157.94 Aligned_cols=170 Identities=21% Similarity=0.240 Sum_probs=118.3
Q ss_pred HHHhHHHHHHHHHHhcCcccccccCcchHHHHHHHHhccCC---------CCeEecCCccchhh------hhcCC--CHH
Q 026778 46 VTLQTMDTIFYEAQRQGRISFYLTTSGEEAINIASAAAIKN---------DDFVVPQYREPGVL------LWRGF--SMQ 108 (233)
Q Consensus 46 ~~~R~~d~~~~~l~r~G~i~~~~~~~GqEa~~vg~~~aL~~---------~D~~~~~yR~~~~~------l~rG~--~~~ 108 (233)
..+|..-..+......|..|...++. |...+.....|+. .|.++.+ .+|+.. ..+|. +.+
T Consensus 6 ~~iR~~~~~~~~~a~sGH~G~~ls~a--~i~~~Ly~~~l~~~p~~p~~~~rDrfvlS-kGH~~~~lYa~l~~~G~~~~~~ 82 (332)
T PF00456_consen 6 NTIRKLILDMVQKAGSGHPGSSLSAA--DILYALYFKVLRYDPKNPKWPNRDRFVLS-KGHASPALYAILALRGYDLSEE 82 (332)
T ss_dssp HHHHHHHHHHHHHHT-S-SHHHHHHH--HHHHHHHHHT-BBBTTBTTSTTS-EEEES-SGGGHHHHHHHHHHTTSSS-HH
T ss_pred HHHHHHHHHHHHHhCCCCCcchHHHH--HHHHHHHhhccccCCccccCCCCCcEEEe-ccchhHHHHHHHHHhcCCCCHH
Confidence 44566666666666777776555554 5555555556653 4888888 678732 23565 444
Q ss_pred HHHHHHhcCCCCCCCCCCCCcccC-CCccccccccccCCCCchhhhHHHHHhhhcC----------CCCeEEEEEcCCcc
Q 026778 109 EFANQCFGNKADYGKGRQMPIHYG-SNKHNYFTVSSTIATQLPHAVGAAYALKMDR----------KDACAVTYFGDGGT 177 (233)
Q Consensus 109 ~~l~e~~g~~~g~~~Gr~~~~H~~-~~~~~~~~~~g~lG~~~~~A~G~A~a~k~~~----------~~~vvv~~~GDG~~ 177 (233)
++. -|.+. |...+.|.. ....|+..++|++|++++.|+|+|+|.|+.+ .+..|+|++|||++
T Consensus 83 ~L~--~fr~~-----~s~~~gHP~~~~~~gie~stGsLGqGl~~avG~Ala~k~~~~~~n~~~~~~~~~~vy~l~GDGel 155 (332)
T PF00456_consen 83 DLK--TFRQL-----GSRLPGHPEYGKTPGIEASTGSLGQGLSIAVGMALAEKMLGARFNKPGFDIIDHRVYVLMGDGEL 155 (332)
T ss_dssp HHT--TTTST-----TSSSSSSTTTTTSTT-SS--SSTTHHHHHHHHHHHHHHHHHHHHHBTTBSTTT--EEEEEEHHHH
T ss_pred HHH--HhccC-----CCCCCCCCcccCCceeEeeccchhcchhhHHHHHHHHHHHHhhhcccccccccceEEEEecCccc
Confidence 432 24433 334566765 4567899999999999999999999998753 36789999999999
Q ss_pred chhhHHHHHHHHHHcCCC-EEEEEecCCccccccccccccCCCchhhhcc
Q 026778 178 SEGDFHAALNFSAVTEAP-VIFICRNNGWAISTPISDQFRSIPSLPCLSN 226 (233)
Q Consensus 178 ~~G~~~Ealn~A~~~~lP-vvfvv~nN~~ais~~~~~q~~~~~~~~~~~~ 226 (233)
+||..|||+.+|+.++|. +|+|+++|+.+++.+++... .+++.+|+++
T Consensus 156 ~EG~~~EA~~~A~~~~L~nLi~i~D~N~~q~dg~~~~~~-~~~~~~k~~a 204 (332)
T PF00456_consen 156 QEGSVWEAASLAGHYKLDNLIVIYDSNGIQIDGPTDIVF-SEDIAKKFEA 204 (332)
T ss_dssp HSHHHHHHHHHHHHTT-TTEEEEEEEESEETTEEGGGTH-HSHHHHHHHH
T ss_pred cchhhHHHHHHHHHhCCCCEEEEEecCCcccCCCccccc-chHHHHHHHH
Confidence 999999999999999995 99999999999999998654 5778888875
No 28
>PLN02582 1-deoxy-D-xylulose-5-phosphate synthase
Probab=99.75 E-value=1.5e-17 Score=164.95 Aligned_cols=163 Identities=13% Similarity=0.106 Sum_probs=113.3
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHhHHHHHHHHHHhcCcccccccCcchHHHHHHHHhccC-CCCeEecC--Cccchhhhhc
Q 026778 27 DSSFVKVSEGVAIKMYNDMVTLQTMDTIFYEAQRQGRISFYLTTSGEEAINIASAAAIK-NDDFVVPQ--YREPGVLLWR 103 (233)
Q Consensus 27 ~~~~~~~s~e~l~~lyr~M~~~R~~d~~~~~l~r~G~i~~~~~~~GqEa~~vg~~~aL~-~~D~~~~~--yR~~~~~l~r 103 (233)
|.+.+.++.++|.++-.. +|..-.++... ..|+++...++. |.+. ++...++ |.|.++.+ |-..++++..
T Consensus 40 p~dlk~l~~~~l~~la~~---iR~~ii~~~~~-~~GH~g~~Ls~v--el~~-aL~~~~~~p~Dr~i~s~GH~ay~~~~l~ 112 (677)
T PLN02582 40 PIHMKNLSVKELKQLADE---LRSDVIFNVSK-TGGHLGSSLGVV--ELTV-ALHYVFNAPQDKILWDVGHQSYPHKILT 112 (677)
T ss_pred HHHHhhCCHHHHHHHHHH---HHHHHHHHHHh-cCCCcCccccHH--HHHH-HHHHhhCCCCCeEEEECcchHHHHHHHH
Confidence 345566777777765444 46554444432 246665444443 5543 3445564 88998876 3333455556
Q ss_pred CCCHHHHHHHHhcCCCCCCCCCCCCcccCCC-ccccccccccCCCCchhhhHHHHHhhhcCCCCeEEEEEcCCccchhhH
Q 026778 104 GFSMQEFANQCFGNKADYGKGRQMPIHYGSN-KHNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDF 182 (233)
Q Consensus 104 G~~~~~~l~e~~g~~~g~~~Gr~~~~H~~~~-~~~~~~~~g~lG~~~~~A~G~A~a~k~~~~~~vvv~~~GDG~~~~G~~ 182 (233)
|. .++ |. -+.+. |. .+.|.... ..+....+|++|++++.|+|+|+|.|++++++.++|++|||++++|++
T Consensus 113 gr-~~~-l~-~~r~~-----g~-l~g~p~~~e~~~~~~~~G~~g~~ls~a~G~A~a~~~~~~~~~v~~viGDG~~~~G~~ 183 (677)
T PLN02582 113 GR-RDK-MH-TMRQT-----NG-LSGFTKRAESEYDCFGTGHSSTTISAGLGMAVGRDLKGKKNNVVAVIGDGAMTAGQA 183 (677)
T ss_pred cc-HHH-hc-ccccC-----CC-cCCCCCCCCCCCceeccchhhhhHHHHHHHHHHHHhcCCCCEEEEEecccccchhhH
Confidence 65 122 22 12222 11 44454332 256667899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCCEEEEEecCCc
Q 026778 183 HAALNFSAVTEAPVIFICRNNGW 205 (233)
Q Consensus 183 ~Ealn~A~~~~lPvvfvv~nN~~ 205 (233)
|||+|+|+.|++|+|+||+||++
T Consensus 184 ~Ealn~a~~~~~~li~iv~~N~~ 206 (677)
T PLN02582 184 YEAMNNAGYLDSDMIVILNDNKQ 206 (677)
T ss_pred HHHHHHHHhhCcCEEEEEECCCC
Confidence 99999999999999999999995
No 29
>PRK05899 transketolase; Reviewed
Probab=99.72 E-value=1.3e-16 Score=157.27 Aligned_cols=171 Identities=19% Similarity=0.211 Sum_probs=120.5
Q ss_pred HHHHhHHHHHHHHHHhcCcccccccCcchHHHHHHHHhccC---------CCCeEecCCccchh------hhhcCC--CH
Q 026778 45 MVTLQTMDTIFYEAQRQGRISFYLTTSGEEAINIASAAAIK---------NDDFVVPQYREPGV------LLWRGF--SM 107 (233)
Q Consensus 45 M~~~R~~d~~~~~l~r~G~i~~~~~~~GqEa~~vg~~~aL~---------~~D~~~~~yR~~~~------~l~rG~--~~ 107 (233)
...+|..-.++......|+++...++. |...+.....|+ +.|.++.+ .+|+. +..+|. +.
T Consensus 12 a~~iR~~~~~~~~~~~~gH~g~~ls~~--~i~~~L~~~~l~~~~~~~~~~~~Dr~i~s-~GH~~~~~Ya~l~~~G~~~~~ 88 (624)
T PRK05899 12 ANAIRVLSIDAVQKANSGHPGMPMGAA--DIAYVLWTRFLRHDPKNPKWPNRDRFVLS-AGHGSMLLYSLLHLAGYDLSI 88 (624)
T ss_pred HHHHHHHHHHHHHHcCCCCccchHHHH--HHHHHHHHHhhcCCCCCCCCCCCCEEEEE-ChhHHHHHHHHHHHcCCCCCH
Confidence 444566555555444556666554444 555443333454 24888766 46664 556786 44
Q ss_pred HHHHHHHhcCCCCCCCCCCCCcccCC-CccccccccccCCCCchhhhHHHHHhhhcCC----------CCeEEEEEcCCc
Q 026778 108 QEFANQCFGNKADYGKGRQMPIHYGS-NKHNYFTVSSTIATQLPHAVGAAYALKMDRK----------DACAVTYFGDGG 176 (233)
Q Consensus 108 ~~~l~e~~g~~~g~~~Gr~~~~H~~~-~~~~~~~~~g~lG~~~~~A~G~A~a~k~~~~----------~~vvv~~~GDG~ 176 (233)
++ +.. +.+..+ ..+.|... ...++...+|++|+++|.|+|+|+|.++++. ++.|+|++|||+
T Consensus 89 ~~-l~~-~~~~~~-----~~~~~p~~~~~~~~~~~~G~lG~gl~~AiG~Ala~~~~~~~~~~~~~~~~~~~v~~v~GDG~ 161 (624)
T PRK05899 89 DD-LKN-FRQLGS-----KTPGHPEYGHTPGVETTTGPLGQGLANAVGMALAEKYLAALFNRPGLDIVDHYTYVLCGDGD 161 (624)
T ss_pred HH-HHH-hcCCCC-----CCCCCCCCCCCCCeeeCCcchhhhHHHHHHHHHHHHHhhhhcCCccccCcCCeEEEEECcch
Confidence 44 333 333222 13445433 2257778899999999999999999998877 889999999999
Q ss_pred cchhhHHHHHHHHHHcCCC-EEEEEecCCccccccccccccCCCchhhhcc
Q 026778 177 TSEGDFHAALNFSAVTEAP-VIFICRNNGWAISTPISDQFRSIPSLPCLSN 226 (233)
Q Consensus 177 ~~~G~~~Ealn~A~~~~lP-vvfvv~nN~~ais~~~~~q~~~~~~~~~~~~ 226 (233)
+++|.+|||+++|+.++|| +++|++||+|+++.++... ..+++++++++
T Consensus 162 ~~~g~~~Eal~~A~~~~L~~li~v~dnN~~~~~~~~~~~-~~~~~~~~~~a 211 (624)
T PRK05899 162 LMEGISHEACSLAGHLKLGNLIVIYDDNRISIDGPTEGW-FTEDVKKRFEA 211 (624)
T ss_pred hhchHHHHHHHHHHHhCCCCEEEEEECCCCccccccccc-ccccHHHHhcc
Confidence 9999999999999999998 8899999999999988744 35677776654
No 30
>PRK11864 2-ketoisovalerate ferredoxin oxidoreductase subunit beta; Provisional
Probab=99.70 E-value=3.8e-17 Score=148.18 Aligned_cols=115 Identities=21% Similarity=0.219 Sum_probs=102.5
Q ss_pred CCccchhhhhcCCCHH-HHHHHHhcCCC------CCCCCCCCCcccCCCccccccccccCCCCchhhhHHHHHhhhcCCC
Q 026778 93 QYREPGVLLWRGFSMQ-EFANQCFGNKA------DYGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRKD 165 (233)
Q Consensus 93 ~yR~~~~~l~rG~~~~-~~l~e~~g~~~------g~~~Gr~~~~H~~~~~~~~~~~~g~lG~~~~~A~G~A~a~k~~~~~ 165 (233)
.||+|+++...|.++. +++.+++|+.+ ||+.++++++|+... ++...+++.|.++++|.|+++|.+.++++
T Consensus 14 ~~~gh~~C~GCG~~~~~~~l~~~lg~~~v~~~~iGC~~~~~g~~p~~~~--~~~~i~~~~G~~~~~A~G~a~A~~~~~~~ 91 (300)
T PRK11864 14 FYPGNAACPGCGAPLGLRYLLKALGEKTVLVIPASCSTVIQGDTPKSPL--TVPVLHTAFAATAAVASGIEEALKARGEK 91 (300)
T ss_pred ecCCCccCCCCCCHHHHHHHHHHhCCCeEEEeCCCccceecCCCCcccc--cccceeehhhChHHHHHHHHHHHHhhCCC
Confidence 5799999999999998 99999999887 888888887776554 66778999999999999999999998776
Q ss_pred CeEEE-EEcCCccchhhHHHHHHHHHHcCCCEEEEEecCCcccccc
Q 026778 166 ACAVT-YFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTP 210 (233)
Q Consensus 166 ~vvv~-~~GDG~~~~G~~~Ealn~A~~~~lPvvfvv~nN~~ais~~ 210 (233)
+++|+ ++|||++.++.| |+|+.|+.+++|++|||+||++.++|-
T Consensus 92 ~~~Vva~~GDG~~~~~g~-~~l~~A~~~~~~v~~vv~dN~~~~~TG 136 (300)
T PRK11864 92 GVIVVGWAGDGGTADIGF-QALSGAAERNHDILYIMYDNEAYMNTG 136 (300)
T ss_pred CcEEEEEEccCccccccH-HHHHHHHHhCcCEEEEEECCeeeecCC
Confidence 66555 999999999997 999999999999999999999988874
No 31
>PRK12571 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=99.68 E-value=4.7e-16 Score=153.83 Aligned_cols=179 Identities=18% Similarity=0.160 Sum_probs=118.3
Q ss_pred eEEeCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHhHHHHHHHHHHhcCcccccccCcchHHHHHHHHhccC-CCCeEecC
Q 026778 15 YRVLDDDGQPFPDSSFVKVSEGVAIKMYNDMVTLQTMDTIFYEAQRQGRISFYLTTSGEEAINIASAAAIK-NDDFVVPQ 93 (233)
Q Consensus 15 ~~vl~~~g~~~~~~~~~~~s~e~l~~lyr~M~~~R~~d~~~~~l~r~G~i~~~~~~~GqEa~~vg~~~aL~-~~D~~~~~ 93 (233)
+.+|+ ++-.|++.+.++.++|.++-. .+|.+-..+.... .|+++.-.++. |.+ +++...++ |.|.++.+
T Consensus 6 ~~~l~---~i~~p~dl~~l~~~~l~~~a~---~iR~~ii~~~~~~-~GH~g~~ls~v--el~-~aL~~~~~~prDr~i~s 75 (641)
T PRK12571 6 TPLLD---RIKGPADLRALSDAELEQLAD---ELRAEVISAVSET-GGHLGSSLGVV--ELT-VALHAVFNTPKDKLVWD 75 (641)
T ss_pred CChhh---hcCCHHHHHhCCHHHHHHHHH---HHHHHHHHHHHHh-CCCcCCCchHH--HHH-HHHHHhcCCCCCcEEEE
Confidence 44455 344455677788777666533 3465544444322 46665554443 443 34445554 67888775
Q ss_pred --CccchhhhhcCCCHHHHHHHHhcCCCCCCCCCCCCcccCCCcc-ccccccccCCCCchhhhHHHHHhhhcCCCCeEEE
Q 026778 94 --YREPGVLLWRGFSMQEFANQCFGNKADYGKGRQMPIHYGSNKH-NYFTVSSTIATQLPHAVGAAYALKMDRKDACAVT 170 (233)
Q Consensus 94 --yR~~~~~l~rG~~~~~~l~e~~g~~~g~~~Gr~~~~H~~~~~~-~~~~~~g~lG~~~~~A~G~A~a~k~~~~~~vvv~ 170 (233)
|-..++++..|. .+-|.. +.+.++ .+.|....+. +-....++-+++++.|+|+|+|.|+.+.++.++|
T Consensus 76 ~GH~~Y~~~~l~g~--~~~l~~-~r~~~~------l~g~p~~~e~~~~~~~~g~~~gslg~a~G~A~a~~~~~~~~~v~~ 146 (641)
T PRK12571 76 VGHQCYPHKILTGR--RDRFRT-LRQKGG------LSGFTKRSESEYDPFGAAHSSTSISAALGFAKARALGQPDGDVVA 146 (641)
T ss_pred CchHHHHHHHHhCC--HHHHhh-hhhCCC------cCCCCCCCcCCCCCcccCCCcChHHHHHHHHHHHHHhCCCCeEEE
Confidence 333335556675 233332 333222 2234322221 1112344457789999999999999999999999
Q ss_pred EEcCCccchhhHHHHHHHHHHcCCCEEEEEecCCcccccccc
Q 026778 171 YFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPIS 212 (233)
Q Consensus 171 ~~GDG~~~~G~~~Ealn~A~~~~lPvvfvv~nN~~ais~~~~ 212 (233)
++|||++++|.+|||+++|+.|++|+++|++||+|+|++++.
T Consensus 147 v~GDG~~~eG~~~Eal~~a~~~~~~li~I~dnN~~~i~~~~~ 188 (641)
T PRK12571 147 VIGDGSLTAGMAYEALNNAGAADRRLIVILNDNEMSIAPPVG 188 (641)
T ss_pred EEeCchhhcchHHHHHHHHHHhCCCEEEEEECCCeeecCCcc
Confidence 999999999999999999999999999999999999999985
No 32
>TIGR00759 aceE pyruvate dehydrogenase E1 component, homodimeric type. WARNING: This family is classified as subfamily rather than equivalog because it includes a counterexample from Pseudomonas putida, MdeB, that is active as an E1 component of an alpha-ketoglutarate dehydrogenase complex rather than a pyruvate dehydrogase complex. The second pyruvate dehydrogenase complex E1 protein from Alcaligenes eutrophus, PdhE, complements an aceE mutant of E. coli but is not part of a pyruvate dehydrogenase complex operon, is more similar to the Pseudomonas putida MdeB than to E. coli AceE, and may have also have a different primary specificity.
Probab=99.66 E-value=1.7e-15 Score=152.18 Aligned_cols=159 Identities=17% Similarity=0.194 Sum_probs=115.5
Q ss_pred CcccccccCcchHHHHHHHHhccCC------CCeEecCCccchh------hhhcCCCHHHHHHHHhcCCCCCCCCCCCCc
Q 026778 62 GRISFYLTTSGEEAINIASAAAIKN------DDFVVPQYREPGV------LLWRGFSMQEFANQCFGNKADYGKGRQMPI 129 (233)
Q Consensus 62 G~i~~~~~~~GqEa~~vg~~~aL~~------~D~~~~~yR~~~~------~l~rG~~~~~~l~e~~g~~~g~~~Gr~~~~ 129 (233)
|+++.+.++. |...+.....|+. +|.|++ .+|+. +...|.-.++-|.. |.+... ..|-++..
T Consensus 102 GHigsslS~a--dIl~vLy~~~lr~~~~~~~rD~VlS--KGHasp~lYA~L~l~G~ls~e~L~~-FRq~~~-g~gL~shP 175 (885)
T TIGR00759 102 GHISTYASAA--TLYEVGFNHFFRGHSEGGGGDLVFF--QGHAAPGIYARAFLEGRLTEEQLDN-FRQEVQ-GDGLSSYP 175 (885)
T ss_pred CCcCCcHHHH--HHHHHHHHHhcCCCCCCCCCCEEEE--CCcHHHHHHHHHHHcCCCCHHHHHH-hcCCCC-CCCCCCCC
Confidence 4555555544 5556666666764 687655 57773 34568533444443 444321 22323323
Q ss_pred ccCCCccccccccccCCCCchhhhHHHHHhhh-------cCCCCeEEEEEcCCccchhhHHHHHHHHHHcCC-CEEEEEe
Q 026778 130 HYGSNKHNYFTVSSTIATQLPHAVGAAYALKM-------DRKDACAVTYFGDGGTSEGDFHAALNFSAVTEA-PVIFICR 201 (233)
Q Consensus 130 H~~~~~~~~~~~~g~lG~~~~~A~G~A~a~k~-------~~~~~vvv~~~GDG~~~~G~~~Ealn~A~~~~l-Pvvfvv~ 201 (233)
|......++..++|++|.+++.|+|+|++.|+ ++.++.|+|++|||+++||..|||+.+|+.++| ++||||+
T Consensus 176 hp~~~p~~ve~sTGSLG~Gls~AvG~Ala~Kyl~~rg~~~~~~~rVyvllGDGEldEG~swEA~~~Aa~~kLdNLi~IVD 255 (885)
T TIGR00759 176 HPWLMPDFWQFPTVSMGLGPINAIYQARFMKYLENRGLKDTGDQKVWAFLGDGEMDEPESKGAITFAAREKLDNLTFVIN 255 (885)
T ss_pred CcCcCCCCEEeCCCCccHHHHHHHHHHHHHHHHHhhccCCCCCceEEEEEcchhhccHHHHHHHHHHHHhCCCCEEEEEe
Confidence 32222235788999999999999999999997 667889999999999999999999999999999 5999999
Q ss_pred cCCcccccccccccc-CCCchhhhcc
Q 026778 202 NNGWAISTPISDQFR-SIPSLPCLSN 226 (233)
Q Consensus 202 nN~~ais~~~~~q~~-~~~~~~~~~~ 226 (233)
+|+.++..|++.... .+++++++.+
T Consensus 256 ~N~~qlDG~v~~~~~i~e~le~~F~a 281 (885)
T TIGR00759 256 CNLQRLDGPVRGNGKIIQELESLFRG 281 (885)
T ss_pred CCCCccCCccccccccchhHHHHHHh
Confidence 999999999997655 6788888764
No 33
>TIGR03186 AKGDH_not_PDH alpha-ketoglutarate dehydrogenase. Several bacterial species have a paralog to homodimeric form of the pyruvate dehydrogenase E1 component (see model TIGR00759), often encoded next to L-methionine gamma-lyase gene (mdeA). The member from a strain of Pseudomonas putida was shown to act on alpha-ketobutyrate, which is produced by MdeA.This model serves as an exception model to TIGR00759, as other proteins hitting TIGR00759 should be identified as the pyruvate dehydrogenase E1 component.
Probab=99.66 E-value=1.9e-15 Score=152.86 Aligned_cols=158 Identities=16% Similarity=0.187 Sum_probs=115.1
Q ss_pred CcccccccCcchHHHHHHHHhccCC------CCeEecCCccchh------hhhcCC-CHHHHHHHHhcCCCCCCCCCCCC
Q 026778 62 GRISFYLTTSGEEAINIASAAAIKN------DDFVVPQYREPGV------LLWRGF-SMQEFANQCFGNKADYGKGRQMP 128 (233)
Q Consensus 62 G~i~~~~~~~GqEa~~vg~~~aL~~------~D~~~~~yR~~~~------~l~rG~-~~~~~l~e~~g~~~g~~~Gr~~~ 128 (233)
|+++...++. |...+.....|+. +|.|++. +|+. +...|. +.++ |.. |.+..+ .+|-+++
T Consensus 102 GH~gs~lS~a--~i~~vLy~~~lr~~~~~~~rD~Vlsk--GHasp~lYA~l~l~G~l~~e~-L~~-fRq~~~-~~gl~~~ 174 (889)
T TIGR03186 102 GHIASYASAA--DLFEVGFNHFFRAAGDASGGDLVYFQ--PHSAPGVYARAFLEGFLSDAQ-LAH-YRQEIA-GPGLCSY 174 (889)
T ss_pred CCCcCcHHHH--HHHHHHHHHhCCCCCCCCCCCEEEEC--CchHHHHHHHHHHcCCCCHHH-HHH-hcCCCC-CCCCCCC
Confidence 5555555444 5566666667774 6866655 5663 334685 5555 443 444321 1233344
Q ss_pred cccCCCccccccccccCCCCchhhhHHHHHhhhcC-------CCCeEEEEEcCCccchhhHHHHHHHHHHcCC-CEEEEE
Q 026778 129 IHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDR-------KDACAVTYFGDGGTSEGDFHAALNFSAVTEA-PVIFIC 200 (233)
Q Consensus 129 ~H~~~~~~~~~~~~g~lG~~~~~A~G~A~a~k~~~-------~~~vvv~~~GDG~~~~G~~~Ealn~A~~~~l-Pvvfvv 200 (233)
.|......++..++|++|++++.|+|+|++.|+.. .+..|+|++|||+++||..|||+.+|+.++| ++|||+
T Consensus 175 phP~~~p~~ve~sTGSLGqGl~~AvG~Ala~kyl~~r~~~~~~~~rVy~llGDGEl~EG~~wEA~~~Aa~~kLdNLi~Iv 254 (889)
T TIGR03186 175 PHPWLMPDFWQFPTGSMGIGPINAIYQARFMRYLQNRGLARTEGRKVWGFFGDGEMDEPESIGALSLAARERLDNLVFVI 254 (889)
T ss_pred CCcccCCCCeEcCCCCchHHHHHHHHHHHHHHHHhhccccCCCCceEEEEEcchhhccHHHHHHHHHHHHhCCCCEEEEE
Confidence 45433233577899999999999999999988432 3688999999999999999999999999999 589999
Q ss_pred ecCCcccccccccccc-CCCchhhhcc
Q 026778 201 RNNGWAISTPISDQFR-SIPSLPCLSN 226 (233)
Q Consensus 201 ~nN~~ais~~~~~q~~-~~~~~~~~~~ 226 (233)
++|+.+++.|++.... .+++++|+++
T Consensus 255 D~N~~qlDG~t~~~~~~~e~l~~kf~a 281 (889)
T TIGR03186 255 NCNLQRLDGPVRGNGRIIDELESQFAG 281 (889)
T ss_pred eCCCCccCCccccccccchHHHHHHHh
Confidence 9999999999997544 6788888865
No 34
>PLN02234 1-deoxy-D-xylulose-5-phosphate synthase
Probab=99.66 E-value=1.3e-15 Score=150.33 Aligned_cols=144 Identities=15% Similarity=0.144 Sum_probs=101.3
Q ss_pred cCcccccccCcchHHHHHHHHhccC-CCCeEecCCccch---hhhhcCCCHHHHHHHHhcCCCCCCCCCCCCcccCCCc-
Q 026778 61 QGRISFYLTTSGEEAINIASAAAIK-NDDFVVPQYREPG---VLLWRGFSMQEFANQCFGNKADYGKGRQMPIHYGSNK- 135 (233)
Q Consensus 61 ~G~i~~~~~~~GqEa~~vg~~~aL~-~~D~~~~~yR~~~---~~l~rG~~~~~~l~e~~g~~~g~~~Gr~~~~H~~~~~- 135 (233)
.|+++.-.++. |.+ +++...++ |.|.++.+ .+|. +.+..|.- .+ |. -+...+ | .+.|....+
T Consensus 103 ~GHlgssLs~v--El~-~aL~~vf~~p~DriI~s-~GHqaya~~~ltgr~-~~-l~-t~r~~g----g--l~G~p~~~es 169 (641)
T PLN02234 103 GGHLGSNLGVV--ELT-VALHYIFNTPHDKILWD-VGHQSYPHKILTGRR-GK-MK-TIRQTN----G--LSGYTKRRES 169 (641)
T ss_pred CCCccccchHH--HHH-HHHHHhcCCCCCeEEEe-cchhHHHHHHHHhhh-hh-hc-ccccCC----C--cCCCCCCCCC
Confidence 55555444443 443 44555565 88998877 4555 44444431 11 21 122221 2 344643333
Q ss_pred cccccccccCCCCchhhhHHHHHhhhcCCCCeEEEEEcCCccchhhHHHHHHHHHHcCCCEEEEEecCCcc------ccc
Q 026778 136 HNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWA------IST 209 (233)
Q Consensus 136 ~~~~~~~g~lG~~~~~A~G~A~a~k~~~~~~vvv~~~GDG~~~~G~~~Ealn~A~~~~lPvvfvv~nN~~a------is~ 209 (233)
.++...+|++|++++.|+|+|+|.+++++++.|+|++|||++++|+.|||+|.|+..+-++|+|++||+.+ ++.
T Consensus 170 ~~d~~~tGslg~glS~a~GmA~a~~l~g~~~~v~~viGDGel~eG~~wEAl~~a~~~~~nlivIlddN~~~~~~~~q~~g 249 (641)
T PLN02234 170 EHDSFGTGHSSTTLSAGLGMAVGRDLKGMNNSVVSVIGDGAMTAGQAYEAMNNAGYLHSNMIVILNDNKQVSLPTANLDG 249 (641)
T ss_pred CCcEECCCchHHHHHHHHHHHHHHHhCCCCCeEEEEEccchhhhHHHHHHHHHHhhhCCCEEEEEECCCCCcccccccCC
Confidence 47778999999999999999999999999999999999999999999999999997777899999999994 445
Q ss_pred cccccccC
Q 026778 210 PISDQFRS 217 (233)
Q Consensus 210 ~~~~q~~~ 217 (233)
+++.....
T Consensus 250 ~~~~v~~l 257 (641)
T PLN02234 250 PTQPVGAL 257 (641)
T ss_pred CCCCcccH
Confidence 55544433
No 35
>KOG0523 consensus Transketolase [Carbohydrate transport and metabolism]
Probab=99.65 E-value=1.6e-15 Score=146.21 Aligned_cols=172 Identities=17% Similarity=0.151 Sum_probs=124.5
Q ss_pred HHHHHhHHHHHHHHHHhcCcccccccCcchHHHHHHHHhccC--C-------CCeEecCCccchh------hhhcCCCHH
Q 026778 44 DMVTLQTMDTIFYEAQRQGRISFYLTTSGEEAINIASAAAIK--N-------DDFVVPQYREPGV------LLWRGFSMQ 108 (233)
Q Consensus 44 ~M~~~R~~d~~~~~l~r~G~i~~~~~~~GqEa~~vg~~~aL~--~-------~D~~~~~yR~~~~------~l~rG~~~~ 108 (233)
.|-.+|..+.++...-..|..++..+.. |...+-....|+ + .|.++.+ .+|+. ....|..-.
T Consensus 13 ~~n~lri~si~~~~~a~sghp~s~~s~A--~~~~vlf~~~mr~~~~~p~~~n~Drfvls-~GHa~~llYa~~~l~G~~~~ 89 (632)
T KOG0523|consen 13 AVNNLRILSIDATSAAKSGHPGSPLSLA--PIMHVLFFEVMRYNPADPYWFNRDRFVLS-NGHACPLLYAHWHLAGYDRE 89 (632)
T ss_pred HhhhhhhhhHHHHHhhhcCCCCCccccc--hhhhhhhhhheecccCCcCCCCCceEEEe-ccccchHHHHHHHHhccCcH
Confidence 4667788888877766677666555443 455555555454 2 3666666 46663 334565444
Q ss_pred HHHHHHhcCCCCCCCCCCCCcccCCCccccccccccCCCCchhhhHHHHHhhhcCC-CCeEEEEEcCCccchhhHHHHHH
Q 026778 109 EFANQCFGNKADYGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRK-DACAVTYFGDGGTSEGDFHAALN 187 (233)
Q Consensus 109 ~~l~e~~g~~~g~~~Gr~~~~H~~~~~~~~~~~~g~lG~~~~~A~G~A~a~k~~~~-~~vvv~~~GDG~~~~G~~~Ealn 187 (233)
+-|.++.... ..-+.|.-..-.++...+|++|++++.|+|+|++.|+.++ ++.|+|++|||+.+||..|||++
T Consensus 90 edl~~~Rq~~------s~t~ghp~~~~~~v~v~TG~lgQgis~a~GmA~~~k~~~k~~~rv~~vlGDG~~~eG~~~EA~s 163 (632)
T KOG0523|consen 90 EDLKNFRQIG------SDTPGHPEPELPGVEVATGPLGQGISNAVGMAYAGKHLGKASNRVYCVLGDGCLTEGSVWEAMS 163 (632)
T ss_pred HHHHHHHhhC------CCCCCCCcccCCCceeccCCccchHHHHHHHHHHHHhhccccceEEEEEcCchhccchHHHHHh
Confidence 4443333321 1223565544567777899999999999999999999998 99999999999999999999999
Q ss_pred HHHHcCCC-EEEEEecCCccccccccccccCCCchhhh
Q 026778 188 FSAVTEAP-VIFICRNNGWAISTPISDQFRSIPSLPCL 224 (233)
Q Consensus 188 ~A~~~~lP-vvfvv~nN~~ais~~~~~q~~~~~~~~~~ 224 (233)
+|++|+|. +|++.+||+.+|+++++..+..+-.+.|.
T Consensus 164 ~Ag~l~ldnLVai~D~n~is~~g~t~~~~~~dV~~~r~ 201 (632)
T KOG0523|consen 164 LAGHLKLDNLVAIYDNNKISIDGATSLGFDEDVYQLRF 201 (632)
T ss_pred hhhhcccCCEEEEEccccccCCCCCcccccccHHHHHH
Confidence 99999995 78888999999999999887555544343
No 36
>PRK13012 2-oxoacid dehydrogenase subunit E1; Provisional
Probab=99.57 E-value=4.3e-14 Score=143.46 Aligned_cols=161 Identities=17% Similarity=0.219 Sum_probs=116.2
Q ss_pred CcccccccCcchHHHHHHHHhccC------CCCeEecCCccchh------hhhcC-CCHHHHHHHHhcCCCCCCCCCCCC
Q 026778 62 GRISFYLTTSGEEAINIASAAAIK------NDDFVVPQYREPGV------LLWRG-FSMQEFANQCFGNKADYGKGRQMP 128 (233)
Q Consensus 62 G~i~~~~~~~GqEa~~vg~~~aL~------~~D~~~~~yR~~~~------~l~rG-~~~~~~l~e~~g~~~g~~~Gr~~~ 128 (233)
|+++.+.++. +...++....|+ .+|.|+. .+|+. +...| ++.++ |.. |-+..+ ..| .+
T Consensus 116 GH~~s~~S~a--~i~~vl~~~~~r~~~~~~~~D~V~s--kGHasp~lYA~~~l~G~l~~e~-L~~-fR~~~~-~~g--l~ 186 (896)
T PRK13012 116 GHIASYASAA--DLFEVGFNHFFRGRDDAGGGDLVYF--QPHSAPGIYARAFLEGRLSEEQ-LDH-FRQEIG-GPG--LS 186 (896)
T ss_pred CCCcccHHHH--HHHHHHHHhhcCCCCCCCCCCEEEE--CcchHHHHHHHHHHcCCCCHHH-HHH-hcCCCC-CCC--CC
Confidence 4555555443 555666666677 5687665 46763 34467 46555 433 444422 223 33
Q ss_pred cccCC--CccccccccccCCCCchhhhHHHHHhhh-------cCCCCeEEEEEcCCccchhhHHHHHHHHHHcCC-CEEE
Q 026778 129 IHYGS--NKHNYFTVSSTIATQLPHAVGAAYALKM-------DRKDACAVTYFGDGGTSEGDFHAALNFSAVTEA-PVIF 198 (233)
Q Consensus 129 ~H~~~--~~~~~~~~~g~lG~~~~~A~G~A~a~k~-------~~~~~vvv~~~GDG~~~~G~~~Ealn~A~~~~l-Pvvf 198 (233)
.|... .+.++...+|++|.+++.|+|.|++.|+ +..++.|+|++|||+++||..|||+.+|++++| ++||
T Consensus 187 ~~P~p~~~p~~~e~~TGSlG~G~~~ai~~A~~~ryl~~~g~~~~~~~~v~~~lGDGEl~Eg~~~eA~~~A~~~~LdNLi~ 266 (896)
T PRK13012 187 SYPHPWLMPDFWQFPTGSMGIGPINAIYQARFMRYLQHRGLKDTSGRKVWGFFGDGEMDEPESIAALSLAAREGLDNLVF 266 (896)
T ss_pred CCCCcCCCCCCEecCCCCchHHHHHHHHHHHhcccccccccccCCCCeEEEEEchhhhccHHHHHHHHHHHHhCCCcEEE
Confidence 33221 1234677899999999999999999993 556789999999999999999999999999999 6999
Q ss_pred EEecCCcccccccccccc-CCCchhhhcc--ccccc
Q 026778 199 ICRNNGWAISTPISDQFR-SIPSLPCLSN--ILTIL 231 (233)
Q Consensus 199 vv~nN~~ais~~~~~q~~-~~~~~~~~~~--~~~~~ 231 (233)
||++|..++..|++.... .+++++++.+ |-.|.
T Consensus 267 ivD~N~~~lDG~v~~~~~~~~~l~~~f~a~GW~Vi~ 302 (896)
T PRK13012 267 VINCNLQRLDGPVRGNGRIIQELEALFRGAGWNVIK 302 (896)
T ss_pred EEECCCccccCccccccccchHHHHHHHhCCCEEEE
Confidence 999999999999988655 5788888754 44443
No 37
>PF13292 DXP_synthase_N: 1-deoxy-D-xylulose-5-phosphate synthase; PDB: 2O1X_C 2O1S_B.
Probab=99.52 E-value=1.8e-14 Score=128.18 Aligned_cols=170 Identities=18% Similarity=0.165 Sum_probs=108.1
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHhHHHHHHHHHH-hcCcccccccCcchHHHHHHHHhccC-CCCeEec--CCccchhhhh
Q 026778 27 DSSFVKVSEGVAIKMYNDMVTLQTMDTIFYEAQ-RQGRISFYLTTSGEEAINIASAAAIK-NDDFVVP--QYREPGVLLW 102 (233)
Q Consensus 27 ~~~~~~~s~e~l~~lyr~M~~~R~~d~~~~~l~-r~G~i~~~~~~~GqEa~~vg~~~aL~-~~D~~~~--~yR~~~~~l~ 102 (233)
|.+.+.+|.++|.++-+.+ |.+ +.+.. +.| |...++.|-=-..+|+...+. |.|.++- .|....|-+.
T Consensus 7 p~dlk~ls~~eL~~La~ei---R~~---ii~~vs~~G--GHl~snLGvVELTiALH~vFd~p~DkivwDvGHQ~Y~HKiL 78 (270)
T PF13292_consen 7 PEDLKKLSIEELEQLAQEI---REF---IIETVSKTG--GHLASNLGVVELTIALHYVFDSPKDKIVWDVGHQAYVHKIL 78 (270)
T ss_dssp HHHHTTS-GGGHHHHHHHH---HHH---HHHHCTCCC--STHHHHHCCHHHHHHHHHHS-TTTSEEEESSSTT-HHHHHC
T ss_pred HHHHHcCCHHHHHHHHHHH---HHH---HHHHHhhcC--CCCCCCccHHHHHHHHHHHhCCCCCeEEEecccccchhhhc
Confidence 3355678888888776655 543 22222 222 345566666566788888886 8898874 5777788887
Q ss_pred cCCCHHHHHHHHhcCCCCCCCCCCCCcccCCCccccccccccCCCCchhhhHHHHHhhhcCCCCeEEEEEcCCccchhhH
Q 026778 103 RGFSMQEFANQCFGNKADYGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDF 182 (233)
Q Consensus 103 rG~~~~~~l~e~~g~~~g~~~Gr~~~~H~~~~~~~~~~~~g~lG~~~~~A~G~A~a~k~~~~~~vvv~~~GDG~~~~G~~ 182 (233)
.|..- -|.-+- +. +|-.|-......++-.+ .+|+-+++++.|+|+|.|.++++++..+|+++||||++.|+.
T Consensus 79 TGR~~--~f~TlR-q~----gGlSGF~~r~ES~~D~f-~~GHsstsiSaa~Gma~ar~l~~~~~~vVaVIGDGalt~Gma 150 (270)
T PF13292_consen 79 TGRRD--RFHTLR-QY----GGLSGFPKRSESEYDAF-GAGHSSTSISAALGMAVARDLKGEDRKVVAVIGDGALTGGMA 150 (270)
T ss_dssp TTTCC--CGGGTT-ST----TS--SS--TTT-TT--S---SSSS-HHHHHHHHHHHHHHHTS---EEEEEETTGGGSHHH
T ss_pred cCcHH--Hhchhh-hc----CCcCCCCCcccCCCCcc-cCCccHhHHHHHHHHHHHHHhcCCCCcEEEEECCcchhHHHH
Confidence 77431 011011 11 12122111122233433 679999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCCEEEEEecCCcccccccc
Q 026778 183 HAALNFSAVTEAPVIFICRNNGWAISTPIS 212 (233)
Q Consensus 183 ~Ealn~A~~~~lPvvfvv~nN~~ais~~~~ 212 (233)
+||||.|+..+.++|+|.+||+++||.++.
T Consensus 151 ~EALN~~g~~~~~liVILNDN~mSIs~nvG 180 (270)
T PF13292_consen 151 FEALNNAGHLKSNLIVILNDNEMSISPNVG 180 (270)
T ss_dssp HHHHHHHHHHT-SEEEEEEE-SBSSSB--S
T ss_pred HHHHHHHHhcCCCEEEEEeCCCcccCCCcc
Confidence 999999999999999999999999998653
No 38
>PRK09405 aceE pyruvate dehydrogenase subunit E1; Reviewed
Probab=99.51 E-value=4e-13 Score=136.19 Aligned_cols=183 Identities=13% Similarity=0.168 Sum_probs=123.8
Q ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHhc----CcccccccCcchHHHHHHHHhccCC------CCeEecCCccchh-----
Q 026778 35 EGVAIKMYNDMVTLQTMDTIFYEAQRQ----GRISFYLTTSGEEAINIASAAAIKN------DDFVVPQYREPGV----- 99 (233)
Q Consensus 35 ~e~l~~lyr~M~~~R~~d~~~~~l~r~----G~i~~~~~~~GqEa~~vg~~~aL~~------~D~~~~~yR~~~~----- 99 (233)
+.++.+..+..++...++.....-... |.++.+.++. +...++....|+. +|.|+. .+|+.
T Consensus 77 ~~~~e~~i~~~iR~~a~~mv~~An~~~~~~GGH~~s~~S~a--~i~~vl~~~~~r~~~~~~~~D~V~s--kGHasp~lYA 152 (891)
T PRK09405 77 DLELERRIRSYIRWNAAAMVLRANKKDLGLGGHISSFASSA--TLYEVGFNHFFRAPNEPHGGDLVFF--QGHASPGIYA 152 (891)
T ss_pred CHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCcccChHHHH--HHHHHHHHhhCCCCCCCCCCCEEEE--CchHHHHHHH
Confidence 455666555555555444433222111 4444443332 4556666667774 687664 47773
Q ss_pred -hhhcCC-CHHHHHHHHhcCCCCCCCCCCCCcccCC--CccccccccccCCCCchhhhHHHHHhhh-------cCCCCeE
Q 026778 100 -LLWRGF-SMQEFANQCFGNKADYGKGRQMPIHYGS--NKHNYFTVSSTIATQLPHAVGAAYALKM-------DRKDACA 168 (233)
Q Consensus 100 -~l~rG~-~~~~~l~e~~g~~~g~~~Gr~~~~H~~~--~~~~~~~~~g~lG~~~~~A~G~A~a~k~-------~~~~~vv 168 (233)
+...|. +.++ |.. |-+.+ .|.+.+.|... .+-.+...++++|.+++.|+|.|++.|+ ++.++.|
T Consensus 153 ~~~l~G~l~~e~-L~~-fR~~~---~g~gl~syPhp~~~p~~~~~~tgS~G~G~~~a~~~A~~~kyl~~~~~~~~~~~rv 227 (891)
T PRK09405 153 RAFLEGRLTEEQ-LDN-FRQEV---DGKGLSSYPHPWLMPDFWQFPTVSMGLGPIMAIYQARFLKYLENRGLKDTSDQKV 227 (891)
T ss_pred HHHHcCCCCHHH-HHH-hcCCC---CCCCCCCCCCcCCCCCCeecCccccchhHHHHHHHHHhCccccccccccCCCceE
Confidence 344674 5555 433 44442 23334444322 1223566789999999999999999994 5567899
Q ss_pred EEEEcCCccchhhHHHHHHHHHHcCC-CEEEEEecCCcccccccccccc-CCCchhhhcc
Q 026778 169 VTYFGDGGTSEGDFHAALNFSAVTEA-PVIFICRNNGWAISTPISDQFR-SIPSLPCLSN 226 (233)
Q Consensus 169 v~~~GDG~~~~G~~~Ealn~A~~~~l-Pvvfvv~nN~~ais~~~~~q~~-~~~~~~~~~~ 226 (233)
+|++|||++.||..|||+.+|+.++| ++|||+++|..++..|++.... .+++.+++.+
T Consensus 228 ~~~~GDGEldEg~~~EA~~~A~~~~LdNLi~ivD~N~q~lDG~v~~~~~~~~~l~~~f~a 287 (891)
T PRK09405 228 WAFLGDGEMDEPESLGAISLAAREKLDNLIFVINCNLQRLDGPVRGNGKIIQELEGIFRG 287 (891)
T ss_pred EEEEcchhhccHHHHHHHHHHHHhCCCCEEEEEECCCcccCCccccccccchhHHHHHhh
Confidence 99999999999999999999999999 6999999999999999987543 6788888754
No 39
>COG1154 Dxs Deoxyxylulose-5-phosphate synthase [Coenzyme metabolism / Lipid metabolism]
Probab=99.49 E-value=2.5e-13 Score=131.59 Aligned_cols=171 Identities=19% Similarity=0.202 Sum_probs=120.7
Q ss_pred CCCCCCCCCHHHHHHHHHHHHHHhHHHHHHHHHHh-cCcccccccCcchHHHHHHHHhccC-CCCeEec--CCccchhhh
Q 026778 26 PDSSFVKVSEGVAIKMYNDMVTLQTMDTIFYEAQR-QGRISFYLTTSGEEAINIASAAAIK-NDDFVVP--QYREPGVLL 101 (233)
Q Consensus 26 ~~~~~~~~s~e~l~~lyr~M~~~R~~d~~~~~l~r-~G~i~~~~~~~GqEa~~vg~~~aL~-~~D~~~~--~yR~~~~~l 101 (233)
.|++.+.+|.++|.++-+.+ |.+ +.+... .| |-.-++.|-=-..+|+...++ |.|.++- .|....|-+
T Consensus 10 ~P~dLk~ls~~eL~~La~Ei---R~~---li~~vS~~G--GHlgsnLGvVELTiALH~VF~sP~D~~IwDVgHQaYpHKi 81 (627)
T COG1154 10 SPADLKKLSIEELPQLADEI---REF---LLEVVSATG--GHLGSNLGVVELTIALHYVFDSPKDKLIWDVGHQAYPHKI 81 (627)
T ss_pred CHHHHhhCCHHHHHHHHHHH---HHH---HHHHhccCC--CccCCCcChhhhhHHHHHHhCCCCCCeEEecCcccchhHH
Confidence 34566778888888876654 533 222222 22 344566666556788888886 8888764 578888888
Q ss_pred hcCCCHHHHHHHHhcCCCCCCCCCCCCcccCCCccccccccccCCCCchhhhHHHHHhhhcCCCCeEEEEEcCCccchhh
Q 026778 102 WRGFSMQEFANQCFGNKADYGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGD 181 (233)
Q Consensus 102 ~rG~~~~~~l~e~~g~~~g~~~Gr~~~~H~~~~~~~~~~~~g~lG~~~~~A~G~A~a~k~~~~~~vvv~~~GDG~~~~G~ 181 (233)
..|.. +-|..+-.+. |-.|-.-....++..+ .+|+-+++++.|+|+|.|..++++++.+|+++||||++-|+
T Consensus 82 LTGR~--e~f~tlRq~~-----GlsGf~~r~ESe~D~f-~~GHsSTSiSaalG~A~A~~~~g~~~~vvaVIGDGAlt~Gm 153 (627)
T COG1154 82 LTGRR--EQFDTLRQKD-----GLSGFPKREESEHDWF-GVGHSSTSISAALGMAKARDLKGEDRNVVAVIGDGALTGGM 153 (627)
T ss_pred hcCch--hhcchhhhcC-----CCCCCCCcccCCCccc-ccCchHHHHHHHhhHHHHHHhcCCCCcEEEEECCccccchH
Confidence 87754 2232222221 1111100111234443 68999999999999999999999999999999999999999
Q ss_pred HHHHHHHHH-HcCCCEEEEEecCCcccccccc
Q 026778 182 FHAALNFSA-VTEAPVIFICRNNGWAISTPIS 212 (233)
Q Consensus 182 ~~Ealn~A~-~~~lPvvfvv~nN~~ais~~~~ 212 (233)
.+||||.|+ ..+-|+|+|++||+++||.++.
T Consensus 154 A~EALN~ag~~~~~~~iVILNDNeMSIs~nvG 185 (627)
T COG1154 154 AFEALNNAGADLKSNLIVILNDNEMSISPNVG 185 (627)
T ss_pred HHHHHhhhhhccCCCEEEEEeCCCcccCCCcc
Confidence 999999998 5567999999999999998754
No 40
>COG0021 TktA Transketolase [Carbohydrate transport and metabolism]
Probab=99.46 E-value=5.1e-13 Score=130.14 Aligned_cols=172 Identities=19% Similarity=0.192 Sum_probs=121.4
Q ss_pred HHHHhHHHHHHHHHHhcCcccccccCcchHHHHHHHHhccC--C-------CCeEecCCccchhhh------hcC--CCH
Q 026778 45 MVTLQTMDTIFYEAQRQGRISFYLTTSGEEAINIASAAAIK--N-------DDFVVPQYREPGVLL------WRG--FSM 107 (233)
Q Consensus 45 M~~~R~~d~~~~~l~r~G~i~~~~~~~GqEa~~vg~~~aL~--~-------~D~~~~~yR~~~~~l------~rG--~~~ 107 (233)
.-.+|.+-..+.+.-..|.-|.-.++. +.+.+-....|+ | .|-++.+. +||-+| ..| +++
T Consensus 10 ~naiR~Ls~davqkAnSGHPG~pmG~A--~ia~~L~~~~l~~nP~nP~W~nRDRFVLSa-GHgSmllYsllhl~Gy~ls~ 86 (663)
T COG0021 10 ANAIRFLSMDAVQKANSGHPGAPMGAA--DIAYVLWTRFLKHNPDNPKWINRDRFVLSA-GHGSMLLYSLLHLTGYDLSL 86 (663)
T ss_pred HHHHHHHHHHHHHhccCCCCCCCccHH--HHHHHHHHHHhcCCCCCCCCCCCccEEecC-CchhHHHHHHHHHccCCCCH
Confidence 345677776666665666544322221 333344444453 3 36677773 787433 235 466
Q ss_pred HHHHHHHhcCCCCCCCCCCCCcccC-CCccccccccccCCCCchhhhHHHHHhhhcCC----------CCeEEEEEcCCc
Q 026778 108 QEFANQCFGNKADYGKGRQMPIHYG-SNKHNYFTVSSTIATQLPHAVGAAYALKMDRK----------DACAVTYFGDGG 176 (233)
Q Consensus 108 ~~~l~e~~g~~~g~~~Gr~~~~H~~-~~~~~~~~~~g~lG~~~~~A~G~A~a~k~~~~----------~~vvv~~~GDG~ 176 (233)
+++.. +... |.--|.|.- ....|+..++||||++++.|||+|+|.|+... |..|+|++|||.
T Consensus 87 edLk~-FRQ~------~SkTpGHPE~~~t~GVe~TTGPLGQGianAVGmAlAe~~La~~fn~~g~~ivdh~tYvl~GDGc 159 (663)
T COG0021 87 EDLKN-FRQL------GSKTPGHPEYGHTPGVEATTGPLGQGLANAVGMALAEKHLAALFNRPGFDIVDHYTYVLVGDGC 159 (663)
T ss_pred HHHHh-hccC------CCCCCCCCCcCCCCCeEeccCccchhHHHHHHHHHHHHHHHhhhCCCCCccccceEEEEecCch
Confidence 66543 2211 122355653 33578999999999999999999999987532 458999999999
Q ss_pred cchhhHHHHHHHHHHcCC-CEEEEEecCCccccccccccccCCCchhhhccc
Q 026778 177 TSEGDFHAALNFSAVTEA-PVIFICRNNGWAISTPISDQFRSIPSLPCLSNI 227 (233)
Q Consensus 177 ~~~G~~~Ealn~A~~~~l-Pvvfvv~nN~~ais~~~~~q~~~~~~~~~~~~~ 227 (233)
++||..|||..+|++++| .+|++.++|+.+|..+++..+ .++.++|+.++
T Consensus 160 lmEGvs~EA~slAG~l~L~kLIvlyD~N~IsiDG~~~~~f-~ed~~~RfeAy 210 (663)
T COG0021 160 LMEGVSHEAASLAGHLKLGKLIVLYDSNDISIDGDTSLSF-TEDVAKRFEAY 210 (663)
T ss_pred HhcccHHHHHHHHhhcCCCcEEEEEeCCCceeccCccccc-chhHHHHHHhc
Confidence 999999999999999999 589999999999999998887 88888887653
No 41
>PLN02225 1-deoxy-D-xylulose-5-phosphate synthase
Probab=99.44 E-value=1.4e-12 Score=129.58 Aligned_cols=167 Identities=9% Similarity=0.035 Sum_probs=122.2
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHhHHHHHHHHHH--hcCcccccccCcchHHHHHHHHhccC-CCCeEec--CCccchhhh
Q 026778 27 DSSFVKVSEGVAIKMYNDMVTLQTMDTIFYEAQ--RQGRISFYLTTSGEEAINIASAAAIK-NDDFVVP--QYREPGVLL 101 (233)
Q Consensus 27 ~~~~~~~s~e~l~~lyr~M~~~R~~d~~~~~l~--r~G~i~~~~~~~GqEa~~vg~~~aL~-~~D~~~~--~yR~~~~~l 101 (233)
|.+.+.++.++|.+|-..+ |.+ +.+.. +.| |-..++.|-=-..+|+...++ |.|.++- .|....|-|
T Consensus 85 P~dlk~L~~~eL~~La~Ei---R~~---li~~v~s~~G--GHl~snLGvVELTvALH~VFd~p~DkiiwDvgHQ~Y~HKi 156 (701)
T PLN02225 85 PLQLKNLSVKELKLLADEI---RTE---LHSVLWKKTQ--KSMNPSFAAIELTLALHYVFRAPVDNILWDAVEQTYAHKV 156 (701)
T ss_pred HHHHhhCCHHHHHHHHHHH---HHH---HHHHhhcccC--CCcCCCccHHHHHHHHHHHhCCCCCceeeccccccchhhH
Confidence 3455677778877776655 543 22222 222 344567776666788888886 8898874 588888888
Q ss_pred hcCCCHHHHHHHHhcCCCCCCCCCCCCcccCCCccccccccccCCCCchhhhHHHHHhhhcCCCCeEEEEEcCCccchhh
Q 026778 102 WRGFSMQEFANQCFGNKADYGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGD 181 (233)
Q Consensus 102 ~rG~~~~~~l~e~~g~~~g~~~Gr~~~~H~~~~~~~~~~~~g~lG~~~~~A~G~A~a~k~~~~~~vvv~~~GDG~~~~G~ 181 (233)
..|.-- + |. . |..+ |-.|-......++-.+ .+|+-+++++.|+|+|.|..++++++.+|++||||+++.|+
T Consensus 157 LTGR~~-~-f~--~-Rq~~---GlsGf~~r~ES~~D~f-~~GHssTSiSaalG~a~ardl~g~~~~vvaVIGDGaltgGm 227 (701)
T PLN02225 157 LTRRWS-A-IP--S-RQKN---GISGVTSQLESEYDSF-GTGHGCNSISAGLGLAVARDIKGKRDRVVAVIDNATITAGQ 227 (701)
T ss_pred hcCChh-h-cC--c-cccC---CcCCCCCCCCCCCCCC-CCChHHHHHHHHHHHHHHHHhcCCCCcEEEEEcCcchhhhh
Confidence 888541 1 21 1 2221 2222111122234444 67999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCCEEEEEecCCcccccc
Q 026778 182 FHAALNFSAVTEAPVIFICRNNGWAISTP 210 (233)
Q Consensus 182 ~~Ealn~A~~~~lPvvfvv~nN~~ais~~ 210 (233)
.+||||.|+..+-++|+|++||+++|+.+
T Consensus 228 a~EaLN~~g~~~~~livILNDN~mSi~~n 256 (701)
T PLN02225 228 AYEAMSNAGYLDSNMIVILNDSRHSLHPN 256 (701)
T ss_pred HHHHHhhhhccCCCEEEEEeCCCCCCCCC
Confidence 99999999999999999999999999987
No 42
>PRK05261 putative phosphoketolase; Provisional
Probab=99.28 E-value=1.7e-11 Score=123.14 Aligned_cols=157 Identities=19% Similarity=0.223 Sum_probs=114.5
Q ss_pred ccccccCcchHHHHHHHHhccCCC--CeEecCCccchhh------hhcC--------CCHHHH-HHHHhcCCCCCCCCCC
Q 026778 64 ISFYLTTSGEEAINIASAAAIKND--DFVVPQYREPGVL------LWRG--------FSMQEF-ANQCFGNKADYGKGRQ 126 (233)
Q Consensus 64 i~~~~~~~GqEa~~vg~~~aL~~~--D~~~~~yR~~~~~------l~rG--------~~~~~~-l~e~~g~~~g~~~Gr~ 126 (233)
+|-|-++.|+-.+-+.+....++. |.++-.=-+||.. ..-| ++.++. |..+|-+-+. .| +
T Consensus 49 ~GHwGt~pgln~vyahln~li~~~~~~~~~V~g~GHg~p~~~a~~~L~Gs~~~~yp~is~d~~gl~~lfrqfs~--pg-g 125 (785)
T PRK05261 49 LGHWGTTPGLNFIYAHLNRLIRKYDLNMIYITGPGHGGPAMVANAYLEGTYSEIYPEITQDEEGMARLFKQFSF--PG-G 125 (785)
T ss_pred CCCCCCcHHHHHHHHHHHHHHhhcCCceEEEeCCCccHHHHHHHHHHcCCCcccCCCCCccHHHHHHHHHhccC--CC-C
Confidence 466777888888766666556654 6544443466632 2245 333331 2222222211 12 4
Q ss_pred CCcccCCCccccccccccCCCCchhhhHHHHHhhhcCCCCeEEEEEcCCccchhhH---HHHHHHHHHcCCC-EEEEEec
Q 026778 127 MPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDF---HAALNFSAVTEAP-VIFICRN 202 (233)
Q Consensus 127 ~~~H~~~~~~~~~~~~g~lG~~~~~A~G~A~a~k~~~~~~vvv~~~GDG~~~~G~~---~Ealn~A~~~~lP-vvfvv~n 202 (233)
.+.|......|+...+|++|+++++|+|+|+. +.+.+++|++|||+.++|.+ |++.+++..+++. |+.|+++
T Consensus 126 ~~sH~~~~tPGi~~~~G~LG~gls~A~G~Al~----~~d~iv~~~vGDGE~EeG~lAa~W~~~~~~~~~~~g~vLPIld~ 201 (785)
T PRK05261 126 IPSHAAPETPGSIHEGGELGYSLSHAYGAAFD----NPDLIVACVVGDGEAETGPLATSWHSNKFLNPATDGAVLPILHL 201 (785)
T ss_pred cCCCCCCCCCCeeeCCCchhhHHHHHHHHHHc----CCCCEEEEEECcCchhhhhhHHHhhhhhhcccccCCCEEEEEEe
Confidence 67888777789999999999999999999964 46789999999999999984 9999999999885 7888899
Q ss_pred CCcccccccccc-ccCCCchhhhccc
Q 026778 203 NGWAISTPISDQ-FRSIPSLPCLSNI 227 (233)
Q Consensus 203 N~~ais~~~~~q-~~~~~~~~~~~~~ 227 (233)
|+|+|++|+..+ +..+++.++++++
T Consensus 202 Ng~~Is~pt~~~~~~~e~l~~rf~g~ 227 (785)
T PRK05261 202 NGYKIANPTILARISDEELEALFRGY 227 (785)
T ss_pred cCCcCCCCccccccCcHhHHHHHHHC
Confidence 999999999965 5568899999873
No 43
>cd00568 TPP_enzymes Thiamine pyrophosphate (TPP) enzyme family, TPP-binding module; found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. These enzymes include, among others, the E1 components of the pyruvate, the acetoin and the branched chain alpha-keto acid dehydrogenase complexes.
Probab=99.16 E-value=3e-11 Score=98.64 Aligned_cols=68 Identities=31% Similarity=0.271 Sum_probs=58.4
Q ss_pred cccccccCCCCchhhhHHHHHhhhcCCCCeEEEEEcCCccchhhHHHHHHHHHHcCCCEEEEEecCCccccccc
Q 026778 138 YFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPI 211 (233)
Q Consensus 138 ~~~~~g~lG~~~~~A~G~A~a~k~~~~~~vvv~~~GDG~~~~G~~~Ealn~A~~~~lPvvfvv~nN~~ais~~~ 211 (233)
+....+++|.++|.|+|++++.+ ++.++|++|||++.+ .++++++|..+++|+++||.||++..+++.
T Consensus 41 ~~~~~g~~G~~~~~a~Gaa~a~~----~~~vv~~~GDG~~~~--~~~~l~ta~~~~~~~~~iv~nN~~~~~~~~ 108 (168)
T cd00568 41 TSTGFGAMGYGLPAAIGAALAAP----DRPVVCIAGDGGFMM--TGQELATAVRYGLPVIVVVFNNGGYGTIRM 108 (168)
T ss_pred eCCCchhhhhhHHHHHHHHHhCC----CCcEEEEEcCcHHhc--cHHHHHHHHHcCCCcEEEEEECCccHHHHH
Confidence 44567899999999999999875 678999999999998 479999999999999999988886665543
No 44
>cd02002 TPP_BFDC Thiamine pyrophosphate (TPP) family, BFDC subfamily, TPP-binding module; composed of proteins similar to Pseudomonas putida benzoylformate decarboxylase (BFDC). P. putida BFDC plays a role in the mandelate pathway, catalyzing the conversion of benzoylformate to benzaldehyde and carbon dioxide. This enzyme is dependent on TPP and a divalent metal cation as cofactors.
Probab=99.01 E-value=4.2e-10 Score=93.59 Aligned_cols=62 Identities=32% Similarity=0.295 Sum_probs=54.3
Q ss_pred ccCCCCchhhhHHHHHhhhcCCCCeEEEEEcCCccchhhHHHHHHHHHHcCCCEEEEEecCC-cccccc
Q 026778 143 STIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNG-WAISTP 210 (233)
Q Consensus 143 g~lG~~~~~A~G~A~a~k~~~~~~vvv~~~GDG~~~~G~~~Ealn~A~~~~lPvvfvv~nN~-~ais~~ 210 (233)
+.+|.++|.|+|+++|.+ ++.++|++|||++..+. +.|++|..+++|+++||.||+ |++...
T Consensus 49 g~mG~~lp~aiGaala~~----~~~vv~i~GDG~f~~~~--~el~ta~~~~~p~~~iV~nN~~~~~~~~ 111 (178)
T cd02002 49 GGLGWGLPAAVGAALANP----DRKVVAIIGDGSFMYTI--QALWTAARYGLPVTVVILNNRGYGALRS 111 (178)
T ss_pred ccccchHHHHHHHHhcCC----CCeEEEEEcCchhhccH--HHHHHHHHhCCCeEEEEEcCccHHHHHH
Confidence 889999999999999863 67899999999999884 679999999999988887775 998753
No 45
>cd02004 TPP_BZL_OCoD_HPCL Thiamine pyrophosphate (TPP) family, BZL_OCoD_HPCL subfamily, TPP-binding module; composed of proteins similar to benzaldehyde lyase (BZL), oxalyl-CoA decarboxylase (OCoD) and 2-hydroxyphytanoyl-CoA lyase (2-HPCL). Pseudomonas fluorescens biovar I BZL cleaves the acyloin linkage of benzoin producing 2 molecules of benzaldehyde and enabling the Pseudomonas to grow on benzoin as the sole carbon and energy source. OCoD has a role in the detoxification of oxalate, catalyzing the decarboxylation of oxalyl-CoA to formate. 2-HPCL is a peroxisomal enzyme which plays a role in the alpha-oxidation of 3-methyl-branched fatty acids, catalyzing the cleavage of 2-hydroxy-3-methylacyl-CoA into formyl-CoA and a 2-methyl-branched fatty aldehyde. All these enzymes depend on Mg2+ and TPP for activity.
Probab=98.97 E-value=1.8e-09 Score=89.61 Aligned_cols=67 Identities=24% Similarity=0.275 Sum_probs=52.6
Q ss_pred ccccCCCCchhhhHHHHHhhhcCCCCeEEEEEcCCccchhhHHHHHHHHHHcCCCEEEEEec-CCccccccccc
Q 026778 141 VSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRN-NGWAISTPISD 213 (233)
Q Consensus 141 ~~g~lG~~~~~A~G~A~a~k~~~~~~vvv~~~GDG~~~~G~~~Ealn~A~~~~lPvvfvv~n-N~~ais~~~~~ 213 (233)
..+.+|.++|.|+|++++. +++.|+|++|||++... .+.|++|+.++||+++||.| |+|++.....+
T Consensus 46 ~~g~mG~~lp~AiGa~la~----~~~~vv~i~GDG~f~~~--~~el~ta~~~~lpv~ivv~NN~~~~~~~~~~~ 113 (172)
T cd02004 46 TFGTLGVGLGYAIAAALAR----PDKRVVLVEGDGAFGFS--GMELETAVRYNLPIVVVVGNNGGWYQGLDGQQ 113 (172)
T ss_pred CCCcccchHHHHHHHHHhC----CCCeEEEEEcchhhcCC--HHHHHHHHHcCCCEEEEEEECcccccchhhhh
Confidence 4567888888888777775 47889999999999976 57799999999998776655 57988765433
No 46
>cd02014 TPP_POX Thiamine pyrophosphate (TPP) family, Pyruvate oxidase (POX) subfamily, TPP-binding module; composed of proteins similar to Lactobacillus plantarum POX, which plays a key role in controlling acetate production under aerobic conditions. POX decarboxylates pyruvate, producing hydrogen peroxide and the energy-storage metabolite acetylphosphate. It requires FAD in addition to TPP and a divalent cation as cofactors.
Probab=98.77 E-value=1.2e-08 Score=85.44 Aligned_cols=63 Identities=27% Similarity=0.337 Sum_probs=51.0
Q ss_pred ccccCCCCchhhhHHHHHhhhcCCCCeEEEEEcCCccchhhHHHHHHHHHHcCCCEEEEEecC-Cccccc
Q 026778 141 VSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNN-GWAIST 209 (233)
Q Consensus 141 ~~g~lG~~~~~A~G~A~a~k~~~~~~vvv~~~GDG~~~~G~~~Ealn~A~~~~lPvvfvv~nN-~~ais~ 209 (233)
..+.+|.++|.|+|+++|. .++.++|++|||++..+ +.| |..|..+++|+++||.|| +|++..
T Consensus 49 ~~g~mG~~~~~aiGa~~a~----~~~~vv~i~GDG~f~~~-~~e-l~t~~~~~lp~~~iv~NN~~~~~~~ 112 (178)
T cd02014 49 LLATMGNGLPGAIAAKLAY----PDRQVIALSGDGGFAML-MGD-LITAVKYNLPVIVVVFNNSDLGFIK 112 (178)
T ss_pred CCchhhhHHHHHHHHHHhC----CCCcEEEEEcchHHHhh-HHH-HHHHHHhCCCcEEEEEECCchhHHH
Confidence 3467888888888877764 46789999999999999 566 788999999998888777 588743
No 47
>PRK07092 benzoylformate decarboxylase; Reviewed
Probab=98.70 E-value=2.8e-08 Score=96.14 Aligned_cols=63 Identities=32% Similarity=0.394 Sum_probs=54.0
Q ss_pred cccccCCCCchhhhHHHHHhhhcCCCCeEEEEEcCCccchhhHHHHHHHHHHcCCCEEEEEecCC-cccc
Q 026778 140 TVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNG-WAIS 208 (233)
Q Consensus 140 ~~~g~lG~~~~~A~G~A~a~k~~~~~~vvv~~~GDG~~~~G~~~Ealn~A~~~~lPvvfvv~nN~-~ais 208 (233)
+.+|.+|.++|.|+|+++|. .++.++|++|||++..+ .+.|++|..+++|+++||.||+ |++.
T Consensus 404 ~~~g~mG~~lp~aiGa~la~----p~~~vv~i~GDG~f~~~--~~eL~ta~~~~lp~~~vv~NN~~~~~~ 467 (530)
T PRK07092 404 MASGGLGYGLPAAVGVALAQ----PGRRVIGLIGDGSAMYS--IQALWSAAQLKLPVTFVILNNGRYGAL 467 (530)
T ss_pred cCCCcccchHHHHHHHHHhC----CCCeEEEEEeCchHhhh--HHHHHHHHHhCCCcEEEEEeChHHHHH
Confidence 34688999999999999885 36789999999999998 4889999999999988887776 9874
No 48
>cd02015 TPP_AHAS Thiamine pyrophosphate (TPP) family, Acetohydroxyacid synthase (AHAS) subfamily, TPP-binding module; composed of proteins similar to the large catalytic subunit of AHAS. AHAS catalyzes the condensation of two molecules of pyruvate to give the acetohydroxyacid, 2-acetolactate. 2-Acetolactate is the precursor of the branched chain amino acids, valine and leucine. AHAS also catalyzes the condensation of pyruvate and 2-ketobutyrate to form 2-aceto-2-hydroxybutyrate in isoleucine biosynthesis. In addition to requiring TPP and a divalent metal ion as cofactors, AHAS requires FAD.
Probab=98.68 E-value=2.9e-08 Score=83.57 Aligned_cols=60 Identities=30% Similarity=0.363 Sum_probs=48.3
Q ss_pred cccCCCCchhhhHHHHHhhhcCCCCeEEEEEcCCccchhhHHHHHHHHHHcCCCEEEEEecCC-ccc
Q 026778 142 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNG-WAI 207 (233)
Q Consensus 142 ~g~lG~~~~~A~G~A~a~k~~~~~~vvv~~~GDG~~~~G~~~Ealn~A~~~~lPvvfvv~nN~-~ai 207 (233)
.+.+|.++|.|+|+++|. +++.|+|++|||+.... ...|.+|+.+++|+++||.||+ |++
T Consensus 49 ~g~mG~~lp~aiGa~la~----~~~~vv~i~GDG~f~~~--~~eL~ta~~~~lpi~ivV~nN~~~~~ 109 (186)
T cd02015 49 LGTMGFGLPAAIGAKVAR----PDKTVICIDGDGSFQMN--IQELATAAQYNLPVKIVILNNGSLGM 109 (186)
T ss_pred ccchhchHHHHHHHHHhC----CCCeEEEEEcccHHhcc--HHHHHHHHHhCCCeEEEEEECCccHH
Confidence 467888888888888775 46789999999999875 4559999999999888776664 654
No 49
>cd02008 TPP_IOR_alpha Thiamine pyrophosphate (TPP) family, IOR-alpha subfamily, TPP-binding module; composed of proteins similar to indolepyruvate ferredoxin oxidoreductase (IOR) alpha subunit. IOR catalyzes the oxidative decarboxylation of arylpyruvates, such as indolepyruvate or phenylpyruvate, which are generated by the transamination of aromatic amino acids, to the corresponding aryl acetyl-CoA.
Probab=98.68 E-value=4.4e-08 Score=82.10 Aligned_cols=63 Identities=19% Similarity=0.203 Sum_probs=50.1
Q ss_pred ccccCCCCchhhhHHHHHhhhcCCCCeEEEEEcCCccchhhHHHHHHHHHHcCCCEEEEEecC-Ccccc
Q 026778 141 VSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNN-GWAIS 208 (233)
Q Consensus 141 ~~g~lG~~~~~A~G~A~a~k~~~~~~vvv~~~GDG~~~~G~~~Ealn~A~~~~lPvvfvv~nN-~~ais 208 (233)
..+.+|.++|.|+|+++|.+ ++.|+|++|||++.... ++.|.+|..+++|+++||-|| .|++.
T Consensus 49 ~~g~mG~gl~~AiGa~la~p----~~~Vv~i~GDG~f~~~g-~~eL~ta~~~~l~i~vvV~nN~~~g~~ 112 (178)
T cd02008 49 TCTCMGASIGVAIGMAKASE----DKKVVAVIGDSTFFHSG-ILGLINAVYNKANITVVILDNRTTAMT 112 (178)
T ss_pred ccccCccHHHHHhhHHhhCC----CCCEEEEecChHHhhcc-HHHHHHHHHcCCCEEEEEECCcceecc
Confidence 46889999999999998864 66799999999996532 688889999999986666555 67654
No 50
>cd02013 TPP_Xsc_like Thiamine pyrophosphate (TPP) family, Xsc-like subfamily, TPP-binding module; composed of proteins similar to Alcaligenes defragrans sulfoacetaldehyde acetyltransferase (Xsc). Xsc plays a key role in the degradation of taurine, catalyzing the desulfonation of 2-sulfoacetaldehyde into sulfite and acetyl phosphate. This enzyme requires TPP and divalent metal ions for activity.
Probab=98.67 E-value=2.5e-08 Score=84.98 Aligned_cols=62 Identities=24% Similarity=0.323 Sum_probs=49.6
Q ss_pred cccCCCCchhhhHHHHHhhhcCCCCeEEEEEcCCccchhhHHHHHHHHHHcCCCEEEEE-ecCCccccc
Q 026778 142 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFIC-RNNGWAIST 209 (233)
Q Consensus 142 ~g~lG~~~~~A~G~A~a~k~~~~~~vvv~~~GDG~~~~G~~~Ealn~A~~~~lPvvfvv-~nN~~ais~ 209 (233)
.+.+|.++|.|+|+++|. .++.|+|++|||+.... ...|.+|+.+++|+++|| +|++|++..
T Consensus 52 ~g~mG~~lpaaiGa~la~----p~r~vv~i~GDG~f~m~--~~eL~Ta~~~~lpvi~vV~NN~~yg~~~ 114 (196)
T cd02013 52 FGNCGYALPAIIGAKAAA----PDRPVVAIAGDGAWGMS--MMEIMTAVRHKLPVTAVVFRNRQWGAEK 114 (196)
T ss_pred CcccccHHHHHHHHHHhC----CCCcEEEEEcchHHhcc--HHHHHHHHHhCCCeEEEEEECchhHHHH
Confidence 467888888888887774 46789999999999996 345778999999987776 666788654
No 51
>cd02005 TPP_PDC_IPDC Thiamine pyrophosphate (TPP) family, PDC_IPDC subfamily, TPP-binding module; composed of proteins similar to pyruvate decarboxylase (PDC) and indolepyruvate decarboxylase (IPDC). PDC, a key enzyme in alcoholic fermentation, catalyzes the conversion of pyruvate to acetaldehyde and CO2. It is able to utilize other 2-oxo acids as substrates. In plants and various plant-associated bacteria, IPDC plays a role in the indole-3-pyruvic acid (IPA) pathway, a tryptophan-dependent biosynthetic route to indole-3-acetaldehyde (IAA). IPDC catalyzes the decarboxylation of IPA to IAA. Both PDC and IPDC depend on TPP and Mg2+ as cofactors.
Probab=98.65 E-value=3.4e-08 Score=83.35 Aligned_cols=63 Identities=27% Similarity=0.391 Sum_probs=50.0
Q ss_pred ccccCCCCchhhhHHHHHhhhcCCCCeEEEEEcCCccchhhHHHHHHHHHHcCCCE-EEEEecCCccccc
Q 026778 141 VSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPV-IFICRNNGWAIST 209 (233)
Q Consensus 141 ~~g~lG~~~~~A~G~A~a~k~~~~~~vvv~~~GDG~~~~G~~~Ealn~A~~~~lPv-vfvv~nN~~ais~ 209 (233)
..+.+|.++|.|+|+++|.+ ++.|+|++|||++.. .++| |.+|+.+++|+ ++|++||+|++..
T Consensus 48 ~~g~mG~~l~~aiGaala~~----~~~vv~i~GDG~f~~-~~~e-l~ta~~~~~p~~ivV~nN~~~~~~~ 111 (183)
T cd02005 48 LWGSIGYSVPAALGAALAAP----DRRVILLVGDGSFQM-TVQE-LSTMIRYGLNPIIFLINNDGYTIER 111 (183)
T ss_pred chhhHhhhHHHHHHHHHhCC----CCeEEEEECCchhhc-cHHH-HHHHHHhCCCCEEEEEECCCcEEEE
Confidence 45788988998888888753 578999999999966 5677 66899999996 5555777898754
No 52
>cd03372 TPP_ComE Thiamine pyrophosphate (TPP) family, ComE subfamily, TPP-binding module; composed of proteins similar to Methanococcus jannaschii sulfopyruvate decarboxylase beta subunit (ComE). M. jannaschii sulfopyruvate decarboxylase (ComDE) is a dodecamer of six alpha (D) subunits and six (E) beta subunits, which catalyzes the decarboxylation of sulfopyruvic acid to sulfoacetaldehyde in the coenzyme M pathway. ComDE requires TPP and divalent metal cation cofactors.
Probab=98.61 E-value=4.6e-08 Score=82.43 Aligned_cols=62 Identities=18% Similarity=0.182 Sum_probs=48.8
Q ss_pred cccCCCCchhhhHHHHHhhhcCCCCeEEEEEcCCccchhhHHHHHHHHHHcCC-CE-EEEEecCCcccccc
Q 026778 142 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEA-PV-IFICRNNGWAISTP 210 (233)
Q Consensus 142 ~g~lG~~~~~A~G~A~a~k~~~~~~vvv~~~GDG~~~~G~~~Ealn~A~~~~l-Pv-vfvv~nN~~ais~~ 210 (233)
.+++|.++|.|+|+|+|.+ +.|+|++|||++... ...+.+|..+++ |+ ++|++||+|++...
T Consensus 41 ~g~mG~~lp~AiGaala~~-----~~vv~i~GDG~f~m~--~~el~ta~~~~~~~l~vvV~NN~~~~~~~~ 104 (179)
T cd03372 41 LGSMGLASSIGLGLALAQP-----RKVIVIDGDGSLLMN--LGALATIAAEKPKNLIIVVLDNGAYGSTGN 104 (179)
T ss_pred ccchhhHHHHHHHHHhcCC-----CcEEEEECCcHHHhC--HHHHHHHHHcCCCCEEEEEEcCccccccCC
Confidence 6889999999999999965 679999999999544 245667778885 66 55568888998643
No 53
>cd02006 TPP_Gcl Thiamine pyrophosphate (TPP) family, Gcl subfamily, TPP-binding module; composed of proteins similar to Escherichia coli glyoxylate carboligase (Gcl). E. coli glyoxylate carboligase, plays a key role in glyoxylate metabolism where it catalyzes the condensation of two molecules of glyoxylate to give tartronic semialdehyde and carbon dioxide. This enzyme requires TPP, magnesium ion and FAD as cofactors.
Probab=98.52 E-value=1.4e-07 Score=80.68 Aligned_cols=63 Identities=24% Similarity=0.178 Sum_probs=50.2
Q ss_pred ccccCCCCchhhhHHHHHhhhcCCCCeEEEEEcCCccchhhHHHHHHHHHHcCCCEEEEEecC-Cccccc
Q 026778 141 VSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNN-GWAIST 209 (233)
Q Consensus 141 ~~g~lG~~~~~A~G~A~a~k~~~~~~vvv~~~GDG~~~~G~~~Ealn~A~~~~lPvvfvv~nN-~~ais~ 209 (233)
..|.+|.++|.|+|+++|. .++.|||++|||+..... ..|.+|..+++|+++||-|| +|++..
T Consensus 55 ~~GsmG~~lpaaiGa~la~----p~~~vv~i~GDG~f~m~~--~eL~Ta~~~~lpviivV~NN~~yg~~~ 118 (202)
T cd02006 55 QAGPLGWTVPAALGVAAAD----PDRQVVALSGDYDFQFMI--EELAVGAQHRIPYIHVLVNNAYLGLIR 118 (202)
T ss_pred CccchhhhhHHHHhHHhhC----CCCeEEEEEeChHhhccH--HHHHHHHHhCCCeEEEEEeCchHHHHH
Confidence 3477888888888888775 467899999999999884 56889999999987777666 588643
No 54
>PRK08327 acetolactate synthase catalytic subunit; Validated
Probab=98.50 E-value=2.2e-07 Score=90.91 Aligned_cols=63 Identities=29% Similarity=0.346 Sum_probs=51.7
Q ss_pred cccCCCCchhhhHHHHHhhhcCCCCeEEEEEcCCccchhhHHHHHHHHHHcCCCEEEEEecC-Ccccc
Q 026778 142 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNN-GWAIS 208 (233)
Q Consensus 142 ~g~lG~~~~~A~G~A~a~k~~~~~~vvv~~~GDG~~~~G~~~Ealn~A~~~~lPvvfvv~nN-~~ais 208 (233)
.+.+|.++|.|+|+++| ..++.++|++|||++..+...+.+++|..+++|+++||.|| +|++.
T Consensus 429 ~gsmG~~lp~aiGa~la----~p~~~vv~i~GDG~f~~~~~e~~l~ta~~~~l~~~ivv~NN~~yg~~ 492 (569)
T PRK08327 429 AGGLGWALGAALGAKLA----TPDRLVIATVGDGSFIFGVPEAAHWVAERYGLPVLVVVFNNGGWLAV 492 (569)
T ss_pred CCCCCcchHHHHHHhhc----CCCCeEEEEecCcceeecCcHHHHHHHHHhCCCEEEEEEeCcccccc
Confidence 46777777777776665 45789999999999999876778999999999998888777 68864
No 55
>TIGR03846 sulfopy_beta sulfopyruvate decarboxylase, beta subunit. Nearly every member of this protein family is the beta subunit, or else the C-terminal region, of sulfopyruvate decarboxylase, in an archaeal species capable of coenzyme M biosynthesis. However, the enzyme also occurs in Roseovarius nubinhibens ISM in a degradative pathway, where the resulting sulfoacetaldehyde is desulfonated to acetyl phosphate, then converted to acetyl-CoA (see PubMed:19581363).
Probab=98.49 E-value=1.5e-07 Score=79.63 Aligned_cols=61 Identities=18% Similarity=0.208 Sum_probs=49.9
Q ss_pred cccCCCCchhhhHHHHHhhhcCCCCeEEEEEcCCccchhhHHHHHHHHHHcC-CCEEEEEecC-Cccccc
Q 026778 142 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTE-APVIFICRNN-GWAIST 209 (233)
Q Consensus 142 ~g~lG~~~~~A~G~A~a~k~~~~~~vvv~~~GDG~~~~G~~~Ealn~A~~~~-lPvvfvv~nN-~~ais~ 209 (233)
.|.+|.++|.|+|+++|. ++.|+|++|||++..+. +.|.+|+.++ +|+++||.|| +|++-.
T Consensus 41 ~gsmG~~lpaAiGa~la~-----~~~Vv~i~GDG~f~m~~--~el~ta~~~~~~pv~~vV~NN~~yg~~~ 103 (181)
T TIGR03846 41 LGSMGLASSIGLGLALAT-----DRTVIVIDGDGSLLMNL--GVLPTIAAESPKNLILVILDNGAYGSTG 103 (181)
T ss_pred ccccccHHHHHHHHHHcC-----CCcEEEEEcchHHHhhh--hHHHHHHHhCCCCeEEEEEeCCcccccc
Confidence 678999999999999885 56799999999998774 6688999999 5998877666 587743
No 56
>cd02003 TPP_IolD Thiamine pyrophosphate (TPP) family, IolD subfamily, TPP-binding module; composed of proteins similar to Rhizobium leguminosarum bv. viciae IolD. IolD plays an important role in myo-inositol catabolism.
Probab=98.47 E-value=3.5e-07 Score=78.46 Aligned_cols=63 Identities=17% Similarity=0.238 Sum_probs=46.8
Q ss_pred ccccCCCCchhhhHHHHHhhhcCCCCeEEEEEcCCccchhhHHHHHHHHHHcCCCEEEEE-ecCCccccc
Q 026778 141 VSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFIC-RNNGWAIST 209 (233)
Q Consensus 141 ~~g~lG~~~~~A~G~A~a~k~~~~~~vvv~~~GDG~~~~G~~~Ealn~A~~~~lPvvfvv-~nN~~ais~ 209 (233)
..+.+|.++|.|+|+++| ..++.+||++|||+...+. ..|.+|..+++|+++|| +||+|++-.
T Consensus 46 ~~gsmG~~lpaAiGa~la----~p~~~vv~i~GDGsf~m~~--~eL~Ta~~~~lpv~ivV~NN~~~g~~~ 109 (205)
T cd02003 46 GYSCMGYEIAAGLGAKLA----KPDREVYVLVGDGSYLMLH--SEIVTAVQEGLKIIIVLFDNHGFGCIN 109 (205)
T ss_pred CcchhhhHHHHHHHHHHh----CCCCeEEEEEccchhhccH--HHHHHHHHcCCCCEEEEEECCccHHHH
Confidence 345677777777776666 4577899999999999863 46888999999975555 566787643
No 57
>PF02775 TPP_enzyme_C: Thiamine pyrophosphate enzyme, C-terminal TPP binding domain; InterPro: IPR011766 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This represents the C-terminal TPP binding domain of TPP enzymes.; GO: 0003824 catalytic activity, 0030976 thiamine pyrophosphate binding; PDB: 2WVA_V 1ZPD_F 2WVG_B 2WVH_B 3OE1_D 2NXW_A 2Q5L_B 2Q5Q_B 2Q5J_A 2Q5O_A ....
Probab=98.46 E-value=1.2e-07 Score=77.09 Aligned_cols=64 Identities=30% Similarity=0.399 Sum_probs=51.0
Q ss_pred ccccCCCCchhhhHHHHHhhhcCCCCeEEEEEcCCccchhhHHHHHHHHHHcCCCEEEEEecC-Ccccccc
Q 026778 141 VSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNN-GWAISTP 210 (233)
Q Consensus 141 ~~g~lG~~~~~A~G~A~a~k~~~~~~vvv~~~GDG~~~~G~~~Ealn~A~~~~lPvvfvv~nN-~~ais~~ 210 (233)
..+.+|.++|.|+|+++| .+++.++|++|||+.... ...|.+|..+++|+++||-|| .|++...
T Consensus 26 ~~g~mG~~~~~aiGa~~a----~p~~~vv~i~GDG~f~~~--~~el~ta~~~~~~v~~vv~nN~~~~~~~~ 90 (153)
T PF02775_consen 26 GFGSMGYALPAAIGAALA----RPDRPVVAITGDGSFLMS--LQELATAVRYGLPVVIVVLNNGGYGMTGG 90 (153)
T ss_dssp TTT-TTTHHHHHHHHHHH----STTSEEEEEEEHHHHHHH--GGGHHHHHHTTSSEEEEEEESSBSHHHHH
T ss_pred CccccCCHHHhhhHHHhh----cCcceeEEecCCcceeec--cchhHHHhhccceEEEEEEeCCcceEecc
Confidence 567788888888888886 457899999999999888 566889999999987777666 5766543
No 58
>PRK08155 acetolactate synthase catalytic subunit; Validated
Probab=98.45 E-value=2.7e-07 Score=90.04 Aligned_cols=62 Identities=26% Similarity=0.322 Sum_probs=51.6
Q ss_pred cccCCCCchhhhHHHHHhhhcCCCCeEEEEEcCCccchhhHHHHHHHHHHcCCCEEEEEecCC-ccccc
Q 026778 142 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNG-WAIST 209 (233)
Q Consensus 142 ~g~lG~~~~~A~G~A~a~k~~~~~~vvv~~~GDG~~~~G~~~Ealn~A~~~~lPvvfvv~nN~-~ais~ 209 (233)
.|.+|.++|.|+|+++|. .++.|+|++|||++... +.| |.+|..+++|+++||.||+ |++..
T Consensus 418 ~g~mG~~lpaaiGa~la~----~~~~vv~i~GDGsf~~~-~~e-L~ta~~~~lpvi~vV~NN~~~g~~~ 480 (564)
T PRK08155 418 LGTMGFGLPAAIGAALAN----PERKVLCFSGDGSLMMN-IQE-MATAAENQLDVKIILMNNEALGLVH 480 (564)
T ss_pred cccccchhHHHHHHHHhC----CCCcEEEEEccchhhcc-HHH-HHHHHHhCCCeEEEEEeCCcccccH
Confidence 368899999999988885 36789999999999986 555 8899999999988887775 88754
No 59
>cd02001 TPP_ComE_PpyrDC Thiamine pyrophosphate (TPP) family, ComE and PpyrDC subfamily, TPP-binding module; composed of proteins similar to sulfopyruvate decarboxylase beta subunit (ComE) and phosphonopyruvate decarboxylase (Ppyr decarboxylase). Methanococcus jannaschii sulfopyruvate decarboxylase (ComDE) is a dodecamer of six alpha (D) subunits and six (E) beta subunits which, catalyzes the decarboxylation of sulfopyruvic acid to sulfoacetaldehyde in the coenzyme M pathway. Ppyr decarboxylase is a homotrimeric enzyme which functions in the biosynthesis of C-P compounds such as bialaphos tripeptide in Streptomyces hygroscopicus. Ppyr decarboxylase and ComDE require TPP and divalent metal cation cofactors.
Probab=98.42 E-value=3.3e-07 Score=75.79 Aligned_cols=60 Identities=15% Similarity=0.171 Sum_probs=47.4
Q ss_pred cccCCCCchhhhHHHHHhhhcCCCCeEEEEEcCCccchhhHHHHHHHHHHc-CCCEEEEE-ecCCcccc
Q 026778 142 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVT-EAPVIFIC-RNNGWAIS 208 (233)
Q Consensus 142 ~g~lG~~~~~A~G~A~a~k~~~~~~vvv~~~GDG~~~~G~~~Ealn~A~~~-~lPvvfvv-~nN~~ais 208 (233)
.+.+|.++|.|+|+++|.+ +.|+|+.|||++.... ..|.+++.+ ++|+++|| +|+.|++.
T Consensus 41 ~gsmG~~lp~AiGa~~a~~-----~~Vv~i~GDG~f~m~~--~el~t~~~~~~~~i~~vV~nN~~~g~~ 102 (157)
T cd02001 41 LGSMGLAGSIGLGLALGLS-----RKVIVVDGDGSLLMNP--GVLLTAGEFTPLNLILVVLDNRAYGST 102 (157)
T ss_pred ecchhhHHHHHHHHHhcCC-----CcEEEEECchHHHhcc--cHHHHHHHhcCCCEEEEEEeCcccccc
Confidence 7889999999999999863 6799999999995542 337788888 59987777 55568764
No 60
>PRK07524 hypothetical protein; Provisional
Probab=98.41 E-value=2.9e-07 Score=89.15 Aligned_cols=61 Identities=30% Similarity=0.433 Sum_probs=50.4
Q ss_pred cccCCCCchhhhHHHHHhhhcCCCCeEEEEEcCCccchhhHHHHHHHHHHcCCCEEEEEecC-Ccccc
Q 026778 142 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNN-GWAIS 208 (233)
Q Consensus 142 ~g~lG~~~~~A~G~A~a~k~~~~~~vvv~~~GDG~~~~G~~~Ealn~A~~~~lPvvfvv~nN-~~ais 208 (233)
.|.+|.++|.|+|+++|. .++.|+|++|||++... +.| |.+|..+++|+++||.|| +|++.
T Consensus 406 ~g~mG~~lp~aiGa~lA~----p~~~vv~i~GDG~f~~~-~~e-l~ta~~~~lpi~~vV~NN~~~g~i 467 (535)
T PRK07524 406 YGTLGYGLPAAIGAALGA----PERPVVCLVGDGGLQFT-LPE-LASAVEADLPLIVLLWNNDGYGEI 467 (535)
T ss_pred cccccchHHHHHHHHHhC----CCCcEEEEEcchHHhhh-HHH-HHHHHHhCCCeEEEEEECCchHHH
Confidence 478888888888888874 56789999999999765 444 999999999998877777 78754
No 61
>cd02010 TPP_ALS Thiamine pyrophosphate (TPP) family, Acetolactate synthase (ALS) subfamily, TPP-binding module; composed of proteins similar to Klebsiella pneumoniae ALS, a catabolic enzyme required for butanediol fermentation. ALS catalyzes the conversion of 2 molecules of pyruvate to acetolactate and carbon dioxide. ALS does not contain FAD, and requires TPP and a divalent metal cation for activity.
Probab=98.40 E-value=3.6e-07 Score=76.75 Aligned_cols=62 Identities=26% Similarity=0.430 Sum_probs=49.6
Q ss_pred ccccCCCCchhhhHHHHHhhhcCCCCeEEEEEcCCccchhhHHHHHHHHHHcCCCEEEEE-ecCCcccc
Q 026778 141 VSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFIC-RNNGWAIS 208 (233)
Q Consensus 141 ~~g~lG~~~~~A~G~A~a~k~~~~~~vvv~~~GDG~~~~G~~~Ealn~A~~~~lPvvfvv-~nN~~ais 208 (233)
..+.+|.++|.|+|+++|. .++.|+|++|||+..... ..|.+|..+++|+++|| +|++|++.
T Consensus 46 ~~g~mG~~lp~aiGa~la~----~~~~vv~i~GDG~f~m~~--~eL~ta~~~~l~vi~vV~NN~~~g~~ 108 (177)
T cd02010 46 GLATMGVALPGAIGAKLVY----PDRKVVAVSGDGGFMMNS--QELETAVRLKIPLVVLIWNDNGYGLI 108 (177)
T ss_pred CChhhhhHHHHHHHHHHhC----CCCcEEEEEcchHHHhHH--HHHHHHHHHCCCeEEEEEECCcchHH
Confidence 4577899899998888874 467899999999997663 56888999999987766 55578875
No 62
>PRK12270 kgd alpha-ketoglutarate decarboxylase; Reviewed
Probab=98.38 E-value=1.1e-05 Score=82.72 Aligned_cols=198 Identities=16% Similarity=0.133 Sum_probs=130.5
Q ss_pred CCCCCHHHHHHHHHHHHHHhHHHHHHHHHH-hcCcccccccCcchHHHHHHHHhccC------CCCeEec-CCccchhhh
Q 026778 30 FVKVSEGVAIKMYNDMVTLQTMDTIFYEAQ-RQGRISFYLTTSGEEAINIASAAAIK------NDDFVVP-QYREPGVLL 101 (233)
Q Consensus 30 ~~~~s~e~l~~lyr~M~~~R~~d~~~~~l~-r~G~i~~~~~~~GqEa~~vg~~~aL~------~~D~~~~-~yR~~~~~l 101 (233)
....+.++.+.+.+++.-.-.||.-+...+ .|. -++-.|-|.+-..+-..|. -+.+++. .||+.=-.|
T Consensus 487 ~~kp~~~eq~~iL~~LnaaEaFEtFLqtkyvGqk----RFslEG~Es~iplld~~~~~aa~~~l~evvigm~HRGRLNVL 562 (1228)
T PRK12270 487 HEKPTREEQKRILSKLNAAEAFETFLQTKYVGQK----RFSLEGGESLIPLLDAVLDQAAEHGLDEVVIGMAHRGRLNVL 562 (1228)
T ss_pred CCCCCHHHHHHHHHHhhhHHHHHHHHhhhcccce----eeeecchhhHHHHHHHHHHHHHhcCCceEEecccccchHHHH
Confidence 456789999999999988888887654433 222 2445666765433333332 2345554 589877666
Q ss_pred h--cCCCHHHHHHHHhcCCCCCCCCCCC--CcccCCCc-----------cccccccccCCCCchhhhHHHHHhhhc---C
Q 026778 102 W--RGFSMQEFANQCFGNKADYGKGRQM--PIHYGSNK-----------HNYFTVSSTIATQLPHAVGAAYALKMD---R 163 (233)
Q Consensus 102 ~--rG~~~~~~l~e~~g~~~g~~~Gr~~--~~H~~~~~-----------~~~~~~~g~lG~~~~~A~G~A~a~k~~---~ 163 (233)
+ -|.+..+++.|+=|+-+..+....| -.|.+... ..+....++|-.-=|..-|++-|.+-. +
T Consensus 563 ani~gK~y~qiF~EFegn~dp~~~~GsGDVKYHlG~eG~~~~~~g~~~~v~laaNPSHLEavdpVleGivRakQd~l~~g 642 (1228)
T PRK12270 563 ANIVGKPYSQIFREFEGNLDPRSAQGSGDVKYHLGAEGTFTQMFGDEIKVSLAANPSHLEAVDPVLEGIVRAKQDRLDKG 642 (1228)
T ss_pred HHHhcCCHHHHHHHhcCCCCccccCcCcceeeeccCceeeeccCCCeeEEEEecCchhhhhcchHhhhhhhhhhhhhccc
Confidence 6 5999999999999987543322222 23433221 112223355666667778988886532 1
Q ss_pred C---CCeEEEEEcCCc-cchhhHHHHHHHHHHcCCC---EEEEEecCCccccccccccccC--CCchhhhccccccc
Q 026778 164 K---DACAVTYFGDGG-TSEGDFHAALNFSAVTEAP---VIFICRNNGWAISTPISDQFRS--IPSLPCLSNILTIL 231 (233)
Q Consensus 164 ~---~~vvv~~~GDG~-~~~G~~~Ealn~A~~~~lP---vvfvv~nN~~ais~~~~~q~~~--~~~~~~~~~~~~~~ 231 (233)
. .-..+++.||.+ ..||.++|.||+|..|++| +|+||.||++++.|..+..-.. -+=.+|...+|.+-
T Consensus 643 ~~~~~vlpi~~hGdaafagQGvV~Etlnla~l~~y~tGGtIhvivNNqiGftT~p~~~Rss~y~td~ak~~~~Pifh 719 (1228)
T PRK12270 643 EEGFTVLPILLHGDAAFAGQGVVAETLNLSQLRGYRTGGTIHIVVNNQVGFTTAPESSRSSEYATDVAKMIQAPIFH 719 (1228)
T ss_pred ccCCceeEEEEeccccccCCchHHHHHHHHhccCCCCCCeEEEEEecCcccccCccccccchhhHHHHhhcCCCEEe
Confidence 1 235689999999 7999999999999999999 9999999999999986633222 11234455666543
No 63
>PRK06882 acetolactate synthase 3 catalytic subunit; Validated
Probab=98.37 E-value=4.5e-07 Score=88.56 Aligned_cols=61 Identities=26% Similarity=0.401 Sum_probs=51.1
Q ss_pred ccccCCCCchhhhHHHHHhhhcCCCCeEEEEEcCCccchhhHHHHHHHHHHcCCCEEEEEecCC-ccc
Q 026778 141 VSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNG-WAI 207 (233)
Q Consensus 141 ~~g~lG~~~~~A~G~A~a~k~~~~~~vvv~~~GDG~~~~G~~~Ealn~A~~~~lPvvfvv~nN~-~ai 207 (233)
..|.+|.++|.|+|+++|. .++.|+|++|||++... -+.|.+|..+++|+++||.||+ |++
T Consensus 419 ~~g~mG~~lp~aiGa~la~----p~~~vv~i~GDG~f~~~--~~eL~ta~~~~lpv~~vV~NN~~~~~ 480 (574)
T PRK06882 419 GAGTMGFGLPAAIGVKFAH----PEATVVCVTGDGSIQMN--IQELSTAKQYDIPVVIVSLNNRFLGM 480 (574)
T ss_pred CcccccchhHHHHHHHhhc----CCCcEEEEEcchhhhcc--HHHHHHHHHhCCCeEEEEEECchhHH
Confidence 3577999999999998885 36689999999999887 3789999999999988887775 654
No 64
>cd03371 TPP_PpyrDC Thiamine pyrophosphate (TPP) family, PpyrDC subfamily, TPP-binding module; composed of proteins similar to phosphonopyruvate decarboxylase (PpyrDC) proteins. PpyrDC is a homotrimeric enzyme which functions in the biosynthesis of C-P compounds such as bialaphos tripeptide in Streptomyces hygroscopicus. These proteins require TPP and divalent metal cation cofactors.
Probab=98.37 E-value=4.2e-07 Score=77.28 Aligned_cols=61 Identities=23% Similarity=0.165 Sum_probs=48.4
Q ss_pred cccCCCCchhhhHHHHHhhhcCCCCeEEEEEcCCccchhhHHHHHHHHHHcCC-CEEEEEecC-Ccccc
Q 026778 142 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEA-PVIFICRNN-GWAIS 208 (233)
Q Consensus 142 ~g~lG~~~~~A~G~A~a~k~~~~~~vvv~~~GDG~~~~G~~~Ealn~A~~~~l-Pvvfvv~nN-~~ais 208 (233)
+|.+|.++|.|+|+++|.. ++.|+|++|||++... .+.|.+|+.+++ |+++||.|| +|++.
T Consensus 47 ~g~mG~~lpaAiGaala~p----~~~Vv~i~GDG~f~m~--~~eL~ta~~~~l~~i~ivV~NN~~yg~~ 109 (188)
T cd03371 47 VGSMGHASQIALGIALARP----DRKVVCIDGDGAALMH--MGGLATIGGLAPANLIHIVLNNGAHDSV 109 (188)
T ss_pred cCccccHHHHHHHHHHhCC----CCcEEEEeCCcHHHhh--ccHHHHHHHcCCCCcEEEEEeCchhhcc
Confidence 4889999999999998863 5679999999999764 466899999997 676666555 57764
No 65
>PRK06725 acetolactate synthase 3 catalytic subunit; Validated
Probab=98.36 E-value=6.5e-07 Score=87.74 Aligned_cols=61 Identities=23% Similarity=0.284 Sum_probs=49.6
Q ss_pred cccCCCCchhhhHHHHHhhhcCCCCeEEEEEcCCccchhhHHHHHHHHHHcCCCEEEEEecCC-cccc
Q 026778 142 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNG-WAIS 208 (233)
Q Consensus 142 ~g~lG~~~~~A~G~A~a~k~~~~~~vvv~~~GDG~~~~G~~~Ealn~A~~~~lPvvfvv~nN~-~ais 208 (233)
.|.+|.++|.|+|+++|. .++.|+|++|||++... + ..|.+|..+++|++|||.||+ |++.
T Consensus 421 ~gsmG~~lp~aiGa~lA~----p~~~vv~i~GDG~f~~~-~-~el~Ta~~~~lpi~~vV~NN~~~~~~ 482 (570)
T PRK06725 421 LGTMGFGFPAAIGAQLAK----EEELVICIAGDASFQMN-I-QELQTIAENNIPVKVFIINNKFLGMV 482 (570)
T ss_pred cccccchhhHHHhhHhhc----CCCeEEEEEecchhhcc-H-HHHHHHHHhCCCeEEEEEECCccHHH
Confidence 378899999998888874 46789999999999755 3 448899999999988887775 6553
No 66
>PRK08199 thiamine pyrophosphate protein; Validated
Probab=98.34 E-value=7.2e-07 Score=86.91 Aligned_cols=60 Identities=27% Similarity=0.375 Sum_probs=46.8
Q ss_pred cccCCCCchhhhHHHHHhhhcCCCCeEEEEEcCCccchhhHHHHHHHHHHcCCCEEEEEecCC-ccc
Q 026778 142 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNG-WAI 207 (233)
Q Consensus 142 ~g~lG~~~~~A~G~A~a~k~~~~~~vvv~~~GDG~~~~G~~~Ealn~A~~~~lPvvfvv~nN~-~ai 207 (233)
.|.+|.++|.|+|++++ ..++.|+|++|||++... .+.|.+|+.+++|+++||.||+ |++
T Consensus 414 ~g~mG~glpaaiGa~la----~p~~~vv~i~GDGsf~~~--~~el~ta~~~~l~i~~vv~nN~~~~~ 474 (557)
T PRK08199 414 SGSMGYGLPAAIAAKLL----FPERTVVAFAGDGCFLMN--GQELATAVQYGLPIIVIVVNNGMYGT 474 (557)
T ss_pred CccccchHHHHHHHHHh----CCCCcEEEEEcchHhhcc--HHHHHHHHHhCCCeEEEEEeCCcchH
Confidence 45666666666665555 457889999999998865 4779999999999999888876 774
No 67
>cd02009 TPP_SHCHC_synthase Thiamine pyrophosphate (TPP) family, SHCHC synthase subfamily, TPP-binding module; composed of proteins similar to Escherichia coli 2-succinyl-6-hydroxyl-2,4-cyclohexadiene-1-carboxylic acid (SHCHC) synthase (also called MenD). SHCHC synthase plays a key role in the menaquinone biosynthetic pathway, converting isochorismate and 2-oxoglutarate to SHCHC, pyruvate and carbon dioxide. The enzyme requires TPP and a divalent metal cation for activity.
Probab=98.31 E-value=3.8e-07 Score=76.31 Aligned_cols=59 Identities=27% Similarity=0.219 Sum_probs=47.5
Q ss_pred ccCCCCchhhhHHHHHhhhcCCCCeEEEEEcCCccchhhHHHHHHHHHHcCCCEEEEEecC-Ccccc
Q 026778 143 STIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNN-GWAIS 208 (233)
Q Consensus 143 g~lG~~~~~A~G~A~a~k~~~~~~vvv~~~GDG~~~~G~~~Ealn~A~~~~lPvvfvv~nN-~~ais 208 (233)
+.+|.++|.|+|+++|. ++.|||++|||+.... -..|.+|..+++|+++||-|| .|++-
T Consensus 51 g~mG~~l~~aiGa~la~-----~~~Vv~i~GDGsf~m~--~~eL~ta~~~~l~v~ivVlNN~~~g~~ 110 (175)
T cd02009 51 SGIDGTLSTALGIALAT-----DKPTVLLTGDLSFLHD--LNGLLLGKQEPLNLTIVVINNNGGGIF 110 (175)
T ss_pred cchhhHHHHHHHHHhcC-----CCCEEEEEehHHHHHh--HHHHHhccccCCCeEEEEEECCCCchh
Confidence 66888999999999884 5679999999999887 366888999999987666555 58753
No 68
>PRK06163 hypothetical protein; Provisional
Probab=98.31 E-value=8.6e-07 Score=76.46 Aligned_cols=61 Identities=23% Similarity=0.259 Sum_probs=47.8
Q ss_pred cccCCCCchhhhHHHHHhhhcCCCCeEEEEEcCCccchhhHHHHHHHHHHc-CCCEEEEEecC-Ccccc
Q 026778 142 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVT-EAPVIFICRNN-GWAIS 208 (233)
Q Consensus 142 ~g~lG~~~~~A~G~A~a~k~~~~~~vvv~~~GDG~~~~G~~~Ealn~A~~~-~lPvvfvv~nN-~~ais 208 (233)
.+.+|.++|.|+|+++|. .++.|||++|||+..... ..|.+|+.+ ++|+++||-|| .|++.
T Consensus 56 ~GsMG~glpaAiGaalA~----p~r~Vv~i~GDG~f~m~~--~eL~Ta~~~~~lpi~ivV~NN~~yg~~ 118 (202)
T PRK06163 56 LGSMGLAFPIALGVALAQ----PKRRVIALEGDGSLLMQL--GALGTIAALAPKNLTIIVMDNGVYQIT 118 (202)
T ss_pred ecccccHHHHHHHHHHhC----CCCeEEEEEcchHHHHHH--HHHHHHHHhcCCCeEEEEEcCCchhhc
Confidence 577999999999998885 467799999999987663 457778776 68987777666 68863
No 69
>PRK08266 hypothetical protein; Provisional
Probab=98.29 E-value=9.1e-07 Score=85.76 Aligned_cols=61 Identities=28% Similarity=0.331 Sum_probs=49.8
Q ss_pred cccCCCCchhhhHHHHHhhhcCCCCeEEEEEcCCccchhhHHHHHHHHHHcCCCEEEEEecC-Ccccc
Q 026778 142 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNN-GWAIS 208 (233)
Q Consensus 142 ~g~lG~~~~~A~G~A~a~k~~~~~~vvv~~~GDG~~~~G~~~Ealn~A~~~~lPvvfvv~nN-~~ais 208 (233)
.|.+|.++|.|+|++++. .++.++|++|||++..+ .+.|.+|..++||+++||-|| +|++.
T Consensus 401 ~GsmG~~lp~aiGa~la~----p~~~vv~v~GDG~f~~~--~~eL~ta~~~~lpv~ivv~NN~~y~~~ 462 (542)
T PRK08266 401 QGTLGYGFPTALGAKVAN----PDRPVVSITGDGGFMFG--VQELATAVQHNIGVVTVVFNNNAYGNV 462 (542)
T ss_pred CcccccHHHHHHHHHHhC----CCCcEEEEEcchhhhcc--HHHHHHHHHhCCCeEEEEEeCCcchHH
Confidence 467888888888776664 56789999999999998 578999999999988877666 68754
No 70
>PRK07586 hypothetical protein; Validated
Probab=98.28 E-value=1.1e-06 Score=84.73 Aligned_cols=61 Identities=31% Similarity=0.303 Sum_probs=48.3
Q ss_pred cccCCCCchhhhHHHHHhhhcCCCCeEEEEEcCCccchhhHHHHHHHHHHcCCCEEEEE-ecCCcccc
Q 026778 142 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFIC-RNNGWAIS 208 (233)
Q Consensus 142 ~g~lG~~~~~A~G~A~a~k~~~~~~vvv~~~GDG~~~~G~~~Ealn~A~~~~lPvvfvv-~nN~~ais 208 (233)
.+.+|.++|.|+|+++|. .++.|+|++|||++... ...|.+|..+++|+++|| +|++|++-
T Consensus 384 ~g~mG~~lpaaiGa~lA~----p~r~Vv~i~GDGsf~m~--~~EL~Ta~~~~lpv~ivV~NN~~y~~~ 445 (514)
T PRK07586 384 GGAIGQGLPLATGAAVAC----PDRKVLALQGDGSAMYT--IQALWTQARENLDVTTVIFANRAYAIL 445 (514)
T ss_pred CcccccHHHHHHHHHHhC----CCCeEEEEEechHHHhH--HHHHHHHHHcCCCCEEEEEeCchhHHH
Confidence 467777777777777774 47789999999999987 467999999999976666 55568864
No 71
>PRK07064 hypothetical protein; Provisional
Probab=98.28 E-value=1.3e-06 Score=84.59 Aligned_cols=65 Identities=25% Similarity=0.334 Sum_probs=50.9
Q ss_pred cccccccCCCCchhhhHHHHHhhhcCCCCeEEEEEcCCccchhhHHHHHHHHHHcCCCEEEEEecC-Ccccc
Q 026778 138 YFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNN-GWAIS 208 (233)
Q Consensus 138 ~~~~~g~lG~~~~~A~G~A~a~k~~~~~~vvv~~~GDG~~~~G~~~Ealn~A~~~~lPvvfvv~nN-~~ais 208 (233)
+.+..+.+|.++|.|+|+++|. .++.++|++|||++.... ..|.+|..+++|+++||-|| +|++-
T Consensus 400 ~~~~~g~mG~~lpaAiGa~lA~----p~~~vv~i~GDGsf~m~~--~eL~Ta~~~~lpv~ivV~NN~~yg~~ 465 (544)
T PRK07064 400 VHALGGGIGQGLAMAIGAALAG----PGRKTVGLVGDGGLMLNL--GELATAVQENANMVIVLMNDGGYGVI 465 (544)
T ss_pred eccCCCccccccchhhhhhhhC----cCCcEEEEEcchHhhhhH--HHHHHHHHhCCCeEEEEEeCChhHHH
Confidence 3333467888888888888874 467899999999998874 67999999999987766555 68764
No 72
>PRK08527 acetolactate synthase 3 catalytic subunit; Validated
Probab=98.27 E-value=1.3e-06 Score=85.19 Aligned_cols=60 Identities=30% Similarity=0.396 Sum_probs=48.7
Q ss_pred ccCCCCchhhhHHHHHhhhcCCCCeEEEEEcCCccchhhHHHHHHHHHHcCCCEEEEEecC-Ccccc
Q 026778 143 STIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNN-GWAIS 208 (233)
Q Consensus 143 g~lG~~~~~A~G~A~a~k~~~~~~vvv~~~GDG~~~~G~~~Ealn~A~~~~lPvvfvv~nN-~~ais 208 (233)
+.+|.++|.|+|+++|. .++.|+|++|||++... +.| |.+|..++||+++||-|| +|++.
T Consensus 414 g~mG~~l~~aiGa~la~----p~~~vv~i~GDG~f~m~-~~e-L~Ta~~~~lpvi~vV~NN~~~~~i 474 (563)
T PRK08527 414 GTMGYGLPAALGAKLAV----PDKVVINFTGDGSILMN-IQE-LMTAVEYKIPVINIILNNNFLGMV 474 (563)
T ss_pred ccccchHHHHHHHHHhC----CCCcEEEEecCchhccc-HHH-HHHHHHhCCCeEEEEEECCcchhH
Confidence 78888888888888875 35679999999999986 344 899999999988777666 56653
No 73
>PRK12474 hypothetical protein; Provisional
Probab=98.27 E-value=1.4e-06 Score=84.15 Aligned_cols=62 Identities=34% Similarity=0.320 Sum_probs=50.0
Q ss_pred ccccCCCCchhhhHHHHHhhhcCCCCeEEEEEcCCccchhhHHHHHHHHHHcCCCEEEEEecC-Ccccc
Q 026778 141 VSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNN-GWAIS 208 (233)
Q Consensus 141 ~~g~lG~~~~~A~G~A~a~k~~~~~~vvv~~~GDG~~~~G~~~Ealn~A~~~~lPvvfvv~nN-~~ais 208 (233)
..|.+|.++|.|+|+++|. .++.|+|++|||++.... .-|.+|..+++|+++||-|| +|++-
T Consensus 387 ~~gsmG~glpaAiGa~lA~----p~r~vv~i~GDG~f~m~~--qEL~Ta~r~~lpv~iiV~NN~~y~~i 449 (518)
T PRK12474 387 TGGSIGQGLPLAAGAAVAA----PDRKVVCPQGDGGAAYTM--QALWTMARENLDVTVVIFANRSYAIL 449 (518)
T ss_pred CCCccCccHHHHHHHHHHC----CCCcEEEEEcCchhcchH--HHHHHHHHHCCCcEEEEEcCCcchHH
Confidence 3477888888888888775 467899999999999884 66999999999987777666 58764
No 74
>PRK07710 acetolactate synthase catalytic subunit; Reviewed
Probab=98.26 E-value=1.3e-06 Score=85.34 Aligned_cols=60 Identities=30% Similarity=0.416 Sum_probs=48.7
Q ss_pred ccCCCCchhhhHHHHHhhhcCCCCeEEEEEcCCccchhhHHHHHHHHHHcCCCEEEEEecC-Ccccc
Q 026778 143 STIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNN-GWAIS 208 (233)
Q Consensus 143 g~lG~~~~~A~G~A~a~k~~~~~~vvv~~~GDG~~~~G~~~Ealn~A~~~~lPvvfvv~nN-~~ais 208 (233)
|++|.++|.|+|+++|. .++.|+|++|||++... +.| |++|..+++|+++||-|| +|++-
T Consensus 424 g~mG~glpaAiGaala~----p~~~vv~i~GDGsf~m~-~~e-L~ta~r~~lpi~ivV~NN~~~~~i 484 (571)
T PRK07710 424 GTMGFGLPAAIGAQLAK----PDETVVAIVGDGGFQMT-LQE-LSVIKELSLPVKVVILNNEALGMV 484 (571)
T ss_pred ccccchHHHHHHHHHhC----CCCcEEEEEcchHHhhh-HHH-HHHHHHhCCCeEEEEEECchHHHH
Confidence 67888888888888874 46789999999999985 455 999999999987766555 68764
No 75
>PRK11269 glyoxylate carboligase; Provisional
Probab=98.25 E-value=1.1e-06 Score=86.25 Aligned_cols=62 Identities=23% Similarity=0.184 Sum_probs=50.3
Q ss_pred ccccCCCCchhhhHHHHHhhhcCCCCeEEEEEcCCccchhhHHHHHHHHHHcCCCEEEEEecCC-cccc
Q 026778 141 VSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNG-WAIS 208 (233)
Q Consensus 141 ~~g~lG~~~~~A~G~A~a~k~~~~~~vvv~~~GDG~~~~G~~~Ealn~A~~~~lPvvfvv~nN~-~ais 208 (233)
..|++|.++|.|+|+++|. .++.|||++|||++.... ..|.+|..+++|+++||-||+ |++-
T Consensus 417 ~~G~mG~glpaAiGa~la~----p~r~Vv~i~GDG~f~m~~--~eL~Ta~~~~lpv~~vV~NN~~~g~i 479 (591)
T PRK11269 417 QAGPLGWTIPAALGVRAAD----PDRNVVALSGDYDFQFLI--EELAVGAQFNLPYIHVLVNNAYLGLI 479 (591)
T ss_pred ccccccchhhhHHhhhhhC----CCCcEEEEEccchhhcCH--HHHHHHHHhCCCeEEEEEeCCchhHH
Confidence 3577888888888888874 467899999999998873 459999999999888776665 7753
No 76
>PRK06546 pyruvate dehydrogenase; Provisional
Probab=98.23 E-value=1.7e-06 Score=84.90 Aligned_cols=62 Identities=29% Similarity=0.359 Sum_probs=50.0
Q ss_pred ccccCCCCchhhhHHHHHhhhcCCCCeEEEEEcCCccchhhHHHHHHHHHHcCCCEEEEEecC-Ccccc
Q 026778 141 VSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNN-GWAIS 208 (233)
Q Consensus 141 ~~g~lG~~~~~A~G~A~a~k~~~~~~vvv~~~GDG~~~~G~~~Ealn~A~~~~lPvvfvv~nN-~~ais 208 (233)
..|.+|.++|.|+|+++|. .++.|+|++|||++..+ -..|.+|..+++|+++||.|| +|++.
T Consensus 406 ~~gsmG~~~paAiGa~la~----p~~~vv~i~GDGsf~~~--~~el~Ta~~~~lpv~~vV~NN~~~g~i 468 (578)
T PRK06546 406 RHGSMANALPHAIGAQLAD----PGRQVISMSGDGGLSML--LGELLTVKLYDLPVKVVVFNNSTLGMV 468 (578)
T ss_pred CcccccchhHHHHHHHHhC----CCCcEEEEEcCchHhhh--HHHHHHHHHhCCCeEEEEEECCccccH
Confidence 3477888888888888875 46789999999999975 245899999999998888777 57754
No 77
>PRK06154 hypothetical protein; Provisional
Probab=98.21 E-value=1.6e-06 Score=84.88 Aligned_cols=61 Identities=21% Similarity=0.262 Sum_probs=49.0
Q ss_pred cccCCCCchhhhHHHHHhhhcCCCCeEEEEEcCCccchhhHHHHHHHHHHcCCCEEEEEecC-Ccccc
Q 026778 142 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNN-GWAIS 208 (233)
Q Consensus 142 ~g~lG~~~~~A~G~A~a~k~~~~~~vvv~~~GDG~~~~G~~~Ealn~A~~~~lPvvfvv~nN-~~ais 208 (233)
.|.+|.++|.|+|+++|. .++.|||++|||++.... ..|.+|..++||+++||-|| .|++-
T Consensus 430 ~gsmG~glpaaiGa~la~----p~r~Vv~i~GDG~f~m~~--~EL~Ta~r~~lpi~~vV~NN~~yg~~ 491 (565)
T PRK06154 430 TTQLGYGLGLAMGAKLAR----PDALVINLWGDAAFGMTG--MDFETAVRERIPILTILLNNFSMGGY 491 (565)
T ss_pred CcccccHHHHHHHHHHhC----CCCcEEEEEcchHHhccH--HHHHHHHHhCCCeEEEEEECCcccee
Confidence 467787777777777764 578899999999998884 56999999999988777666 58754
No 78
>TIGR00118 acolac_lg acetolactate synthase, large subunit, biosynthetic type. Several isozymes of this enzyme are found in E. coli K12, one of which contains a frameshift in the large subunit gene and is not expressed.
Probab=98.21 E-value=1.6e-06 Score=84.42 Aligned_cols=60 Identities=25% Similarity=0.326 Sum_probs=49.3
Q ss_pred cccCCCCchhhhHHHHHhhhcCCCCeEEEEEcCCccchhhHHHHHHHHHHcCCCEEEEEecCC-ccc
Q 026778 142 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNG-WAI 207 (233)
Q Consensus 142 ~g~lG~~~~~A~G~A~a~k~~~~~~vvv~~~GDG~~~~G~~~Ealn~A~~~~lPvvfvv~nN~-~ai 207 (233)
.+++|.++|.|+|+++|. .++.|+|++|||++.... ..|.+|..+++|+++||.||+ |++
T Consensus 411 ~g~mG~~l~aaiGa~la~----~~~~vv~~~GDG~f~~~~--~eL~ta~~~~l~~~~vv~NN~~~~~ 471 (558)
T TIGR00118 411 LGTMGFGLPAAIGAKVAK----PESTVICITGDGSFQMNL--QELSTAVQYDIPVKILILNNRYLGM 471 (558)
T ss_pred cccccchhhHHHhhhhhC----CCCcEEEEEcchHHhccH--HHHHHHHHhCCCeEEEEEeCCchHH
Confidence 377888899999988774 467899999999999853 369999999999988888886 543
No 79
>PRK09124 pyruvate dehydrogenase; Provisional
Probab=98.20 E-value=2.1e-06 Score=83.99 Aligned_cols=62 Identities=26% Similarity=0.249 Sum_probs=48.1
Q ss_pred ccccCCCCchhhhHHHHHhhhcCCCCeEEEEEcCCccchhhHHHHHHHHHHcCCCEEEEEecC-Ccccc
Q 026778 141 VSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNN-GWAIS 208 (233)
Q Consensus 141 ~~g~lG~~~~~A~G~A~a~k~~~~~~vvv~~~GDG~~~~G~~~Ealn~A~~~~lPvvfvv~nN-~~ais 208 (233)
..|.+|.++|.|+|+++|. .++.|+|++|||++.... ..|.+|..+++|+++||-|| +|++.
T Consensus 406 ~~G~mG~~lpaAiGa~la~----p~r~vv~i~GDGsf~m~~--~eL~Ta~~~~lpv~ivV~NN~~~g~i 468 (574)
T PRK09124 406 NHGSMANAMPQALGAQAAH----PGRQVVALSGDGGFSMLM--GDFLSLVQLKLPVKIVVFNNSVLGFV 468 (574)
T ss_pred CcccccchHHHHHHHHHhC----CCCeEEEEecCcHHhccH--HHHHHHHHhCCCeEEEEEeCCccccH
Confidence 3467788888888887775 467899999999998773 44889999999986666555 68774
No 80
>PRK09107 acetolactate synthase 3 catalytic subunit; Validated
Probab=98.19 E-value=2.4e-06 Score=84.20 Aligned_cols=60 Identities=23% Similarity=0.249 Sum_probs=48.7
Q ss_pred ccCCCCchhhhHHHHHhhhcCCCCeEEEEEcCCccchhhHHHHHHHHHHcCCCEEEEEecC-Ccccc
Q 026778 143 STIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNN-GWAIS 208 (233)
Q Consensus 143 g~lG~~~~~A~G~A~a~k~~~~~~vvv~~~GDG~~~~G~~~Ealn~A~~~~lPvvfvv~nN-~~ais 208 (233)
+.+|.++|.|+|+++|. .++.|||++|||++...- ..|.+|..+++|+++||-|| +|++-
T Consensus 430 gsmG~glpaaiGa~lA~----p~r~Vv~i~GDG~f~m~~--~EL~Ta~r~~lpvi~vV~NN~~y~~i 490 (595)
T PRK09107 430 GTMGYGLPAALGVQIAH----PDALVIDIAGDASIQMCI--QEMSTAVQYNLPVKIFILNNQYMGMV 490 (595)
T ss_pred hhhhhhHHHHHHHHHhC----CCCeEEEEEcCchhhccH--HHHHHHHHhCCCeEEEEEeCCccHHH
Confidence 67788777777777764 567899999999999884 45999999999988877666 58753
No 81
>PRK06965 acetolactate synthase 3 catalytic subunit; Validated
Probab=98.17 E-value=3.1e-06 Score=83.18 Aligned_cols=61 Identities=26% Similarity=0.268 Sum_probs=49.1
Q ss_pred cccCCCCchhhhHHHHHhhhcCCCCeEEEEEcCCccchhhHHHHHHHHHHcCCCEEEEEecC-Ccccc
Q 026778 142 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNN-GWAIS 208 (233)
Q Consensus 142 ~g~lG~~~~~A~G~A~a~k~~~~~~vvv~~~GDG~~~~G~~~Ealn~A~~~~lPvvfvv~nN-~~ais 208 (233)
.|++|.++|.|+|+++|. .++.|||++|||+..... ..|.+|..+++|+++||-|| .|++.
T Consensus 436 ~gsmG~glpaaiGa~lA~----p~r~Vv~i~GDGsf~m~~--~eL~Ta~r~~lpviivV~NN~~~~~i 497 (587)
T PRK06965 436 LGTMGVGLPYAMGIKMAH----PDDDVVCITGEGSIQMCI--QELSTCLQYDTPVKIISLNNRYLGMV 497 (587)
T ss_pred cccccchHHHHHHHHHhC----CCCcEEEEEcchhhhcCH--HHHHHHHHcCCCeEEEEEECCcchHH
Confidence 367888888888888775 467899999999999884 66999999999987777666 57653
No 82
>PRK06112 acetolactate synthase catalytic subunit; Validated
Probab=98.16 E-value=4.1e-06 Score=82.02 Aligned_cols=59 Identities=31% Similarity=0.460 Sum_probs=47.4
Q ss_pred ccCCCCchhhhHHHHHhhhcCCCCeEEEEEcCCccchhhHHHHHHHHHHcCCCEEEEEecCC-ccc
Q 026778 143 STIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNG-WAI 207 (233)
Q Consensus 143 g~lG~~~~~A~G~A~a~k~~~~~~vvv~~~GDG~~~~G~~~Ealn~A~~~~lPvvfvv~nN~-~ai 207 (233)
+.+|.++|.|+|+++| ..++.|+|++|||++.. ..+.|++|..+++|+++||.||+ |++
T Consensus 437 gsmG~~l~~aiGa~la----~~~~~vv~i~GDGsf~~--~~~el~ta~~~~l~~~~vv~NN~~~g~ 496 (578)
T PRK06112 437 AGLGWGVPMAIGAKVA----RPGAPVICLVGDGGFAH--VWAELETARRMGVPVTIVVLNNGILGF 496 (578)
T ss_pred cccccHHHHHHHHHhh----CCCCcEEEEEcchHHHh--HHHHHHHHHHhCCCeEEEEEeCCccCC
Confidence 5677777777777766 35678999999999864 47889999999999988887775 443
No 83
>cd03375 TPP_OGFOR Thiamine pyrophosphate (TPP family), 2-oxoglutarate ferredoxin oxidoreductase (OGFOR) subfamily, TPP-binding module; OGFOR catalyzes the oxidative decarboxylation of 2-oxo-acids, with ferredoxin acting as an electron acceptor. In the TCA cycle, OGFOR catalyzes the oxidative decarboxylation of 2-oxoglutarate to succinyl-CoA. In the reductive tricarboxylic acid cycle found in the anaerobic autotroph Hydrogenobacter thermophilus, OGFOR catalyzes the reductive carboxylation of succinyl-CoA to produce 2-oxoglutarate. Thauera aromatica OGFOR has been shown to provide reduced ferredoxin to benzoyl-CoA reductase, a key enzyme in the anaerobic metabolism of aromatic compounds. OGFOR is dependent on TPP and a divalent metal cation for activity.
Probab=98.16 E-value=3.5e-06 Score=71.78 Aligned_cols=61 Identities=21% Similarity=0.267 Sum_probs=46.3
Q ss_pred ccCCCCchhhhHHHHHhhhcCCCCeEEEEEcCCcc-chhhHHHHHHHHHHcCCCEEEEEecC-Cccccc
Q 026778 143 STIATQLPHAVGAAYALKMDRKDACAVTYFGDGGT-SEGDFHAALNFSAVTEAPVIFICRNN-GWAIST 209 (233)
Q Consensus 143 g~lG~~~~~A~G~A~a~k~~~~~~vvv~~~GDG~~-~~G~~~Ealn~A~~~~lPvvfvv~nN-~~ais~ 209 (233)
+.+|.++|.|+|+++|. .++.||++.|||+. ..+ ...|.+|..+++|+++||-|| .|++..
T Consensus 51 g~mG~glpaAiGa~la~----p~r~Vv~i~GDGs~f~m~--~~eL~ta~~~~lpv~iiVlnN~~yg~~~ 113 (193)
T cd03375 51 TLHGRALAVATGVKLAN----PDLTVIVVSGDGDLAAIG--GNHFIHAARRNIDITVIVHNNQIYGLTK 113 (193)
T ss_pred hhhccHHHHHHHHHHhC----CCCeEEEEeccchHhhcc--HHHHHHHHHhCCCeEEEEEcCcccccCC
Confidence 66777777777777764 57889999999994 444 456889999999988777666 577644
No 84
>COG3961 Pyruvate decarboxylase and related thiamine pyrophosphate-requiring enzymes [Carbohydrate transport and metabolism / Coenzyme metabolism / General function prediction only]
Probab=98.16 E-value=2.6e-06 Score=82.14 Aligned_cols=73 Identities=26% Similarity=0.402 Sum_probs=58.8
Q ss_pred cccccCCCCchhhhHHHHHhhhcCCCCeEEEEEcCCccchhhHHHHHHHHHHcCC-CEEEEEecCCccccccccccccCC
Q 026778 140 TVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEA-PVIFICRNNGWAISTPISDQFRSI 218 (233)
Q Consensus 140 ~~~g~lG~~~~~A~G~A~a~k~~~~~~vvv~~~GDG~~~~G~~~Ealn~A~~~~l-Pvvfvv~nN~~ais~~~~~q~~~~ 218 (233)
+-.|+||..+|.|.|.++|.+ ++.++.|+|||+.+.-. +-+..--+|+| |+|||++|++|.|..-.+..+...
T Consensus 408 ~lWGSIG~t~pAalGa~~A~~----drR~IL~iGDGs~QlTv--QEiStmiR~gl~p~ifvlNN~GYTIEr~IHg~~~~Y 481 (557)
T COG3961 408 PLWGSIGYTLPAALGAALAAP----DRRVILFIGDGSLQLTV--QEISTMIRWGLKPIIFVLNNDGYTIERAIHGPTAPY 481 (557)
T ss_pred cchhhcccccHhhhhhhhcCC----CccEEEEEcCchhhhhH--HHHHHHHHcCCCcEEEEEcCCCcEEEehhcCCCcCc
Confidence 456788888888888888874 68899999999998873 34777888999 699999999999987777644433
No 85
>cd03376 TPP_PFOR_porB_like Thiamine pyrophosphate (TPP family), PFOR porB-like subfamily, TPP-binding module; composed of proteins similar to the beta subunit (porB) of the Helicobacter pylori four-subunit pyruvate ferredoxin oxidoreductase (PFOR), which are also found in archaea and some hyperthermophilic bacteria. PFOR catalyzes the oxidative decarboxylation of pyruvate to form acetyl-CoA, a crucial step in many metabolic pathways. Archaea, anaerobic bacteria and eukaryotes that lack mitochondria (and therefore pyruvate dehydrogenase) use PFOR to oxidatively decarboxylate pyruvate, with ferredoxin or flavodoxin as the electron acceptor. The 36-kDa porB subunit contains the binding sites for the cofactors, TPP and a divalent metal cation, which are required for activity.
Probab=98.16 E-value=1.8e-06 Score=76.01 Aligned_cols=61 Identities=30% Similarity=0.457 Sum_probs=46.1
Q ss_pred ccccCCCCchhhhHHHHHhhhcCCCCeEEEEEcCCcc-chhhHHHHHHHHHHcCCCEEEEEecCC-ccc
Q 026778 141 VSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGT-SEGDFHAALNFSAVTEAPVIFICRNNG-WAI 207 (233)
Q Consensus 141 ~~g~lG~~~~~A~G~A~a~k~~~~~~vvv~~~GDG~~-~~G~~~Ealn~A~~~~lPvvfvv~nN~-~ai 207 (233)
..+++|.++|.|+|++. ...++.|||++|||++ ..+ ...|..|..+++|+++||-||+ |++
T Consensus 60 ~~gsmG~GlpaAiGa~~----a~p~r~VV~i~GDG~~~~m~--~~eL~ta~~~~~pv~~vVlNN~~yg~ 122 (235)
T cd03376 60 NAAAVASGIEAALKALG----RGKDITVVAFAGDGGTADIG--FQALSGAAERGHDILYICYDNEAYMN 122 (235)
T ss_pred CHHHHHHHHHHHHHHhc----cCCCCeEEEEEcCchHHhhH--HHHHHHHHHcCCCeEEEEECCccccc
Confidence 34567777777776644 3456789999999995 555 4569999999999988887775 773
No 86
>CHL00099 ilvB acetohydroxyacid synthase large subunit
Probab=98.15 E-value=2.6e-06 Score=83.68 Aligned_cols=61 Identities=25% Similarity=0.244 Sum_probs=49.7
Q ss_pred ccccCCCCchhhhHHHHHhhhcCCCCeEEEEEcCCccchhhHHHHHHHHHHcCCCEEEEEecCC-ccc
Q 026778 141 VSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNG-WAI 207 (233)
Q Consensus 141 ~~g~lG~~~~~A~G~A~a~k~~~~~~vvv~~~GDG~~~~G~~~Ealn~A~~~~lPvvfvv~nN~-~ai 207 (233)
..|.+|.++|.|+|+++|. +++.|+|+.|||++... -..|.+|..+++|+++||.||+ |.+
T Consensus 428 ~~g~mG~glpaaiGaala~----p~~~vv~i~GDG~f~m~--~~eL~Ta~~~~l~~~~vV~NN~~y~~ 489 (585)
T CHL00099 428 GLGTMGYGLPAAIGAQIAH----PNELVICISGDASFQMN--LQELGTIAQYNLPIKIIIINNKWQGM 489 (585)
T ss_pred cccchhhhHHHHHHHHHhC----CCCeEEEEEcchhhhhh--HHHHHHHHHhCCCeEEEEEECCcchH
Confidence 3477888888888888875 36789999999999877 3668999999999988887775 654
No 87
>PRK09259 putative oxalyl-CoA decarboxylase; Validated
Probab=98.14 E-value=3.7e-06 Score=82.19 Aligned_cols=57 Identities=19% Similarity=0.159 Sum_probs=48.4
Q ss_pred ccccCCCCchhhhHHHHHhhhcCCCCeEEEEEcCCccchhhHHHHHHHHHHcCCCEEEEEecCC
Q 026778 141 VSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNG 204 (233)
Q Consensus 141 ~~g~lG~~~~~A~G~A~a~k~~~~~~vvv~~~GDG~~~~G~~~Ealn~A~~~~lPvvfvv~nN~ 204 (233)
..|.+|.++|.|+|+++|. ++.|+|++|||+....- ..|.+|..+++|+++||-||+
T Consensus 422 ~~gsmG~glpaaiGa~la~-----~~~vv~i~GDG~f~m~~--~EL~Ta~r~~lpi~~vV~NN~ 478 (569)
T PRK09259 422 TWGVMGIGMGYAIAAAVET-----GKPVVAIEGDSAFGFSG--MEVETICRYNLPVTVVIFNNG 478 (569)
T ss_pred CCccccccHHHHHHHHhcC-----CCcEEEEecCccccccH--HHHHHHHHcCCCEEEEEEeCh
Confidence 3488999999999999882 56799999999999884 349999999999988887776
No 88
>PRK07979 acetolactate synthase 3 catalytic subunit; Validated
Probab=98.14 E-value=3.7e-06 Score=82.27 Aligned_cols=59 Identities=29% Similarity=0.372 Sum_probs=48.5
Q ss_pred ccCCCCchhhhHHHHHhhhcCCCCeEEEEEcCCccchhhHHHHHHHHHHcCCCEEEEEecC-Cccc
Q 026778 143 STIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNN-GWAI 207 (233)
Q Consensus 143 g~lG~~~~~A~G~A~a~k~~~~~~vvv~~~GDG~~~~G~~~Ealn~A~~~~lPvvfvv~nN-~~ai 207 (233)
+++|.++|.|+|+++|. .++.|||++|||++... -..|.+|..++||+++||-|| +|++
T Consensus 421 g~mG~glpaaiGa~la~----p~~~vv~i~GDG~f~m~--~~eL~Ta~r~~l~v~ivV~NN~~yg~ 480 (574)
T PRK07979 421 GTMGFGLPAALGVKMAL----PEETVVCVTGDGSIQMN--IQELSTALQYELPVLVLNLNNRYLGM 480 (574)
T ss_pred cchhhHHHHHHHHHHhC----CCCeEEEEEcchhhhcc--HHHHHHHHHhCCCeEEEEEeCchhhH
Confidence 77888888888888774 46689999999999988 366999999999988777666 5775
No 89
>TIGR01504 glyox_carbo_lig glyoxylate carboligase. Glyoxylate carboligase, also called tartronate-semialdehyde synthase, releases CO2 while synthesizing a single molecule of tartronate semialdehyde from two molecules of glyoxylate. It is a thiamine pyrophosphate-dependent enzyme, closely related in sequence to the large subunit of acetolactate synthase. In the D-glycerate pathway, part of allantoin degradation in the Enterobacteriaceae, tartronate semialdehyde is converted to D-glycerate and then 3-phosphoglycerate, a product of glycolysis and entry point in the general metabolism.
Probab=98.14 E-value=2.7e-06 Score=83.73 Aligned_cols=61 Identities=21% Similarity=0.180 Sum_probs=48.3
Q ss_pred cccCCCCchhhhHHHHHhhhcCCCCeEEEEEcCCccchhhHHHHHHHHHHcCCCEEEEEecC-Ccccc
Q 026778 142 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNN-GWAIS 208 (233)
Q Consensus 142 ~g~lG~~~~~A~G~A~a~k~~~~~~vvv~~~GDG~~~~G~~~Ealn~A~~~~lPvvfvv~nN-~~ais 208 (233)
.|++|.++|.|+|+++|. .++.||+++|||++... -..|.+|..+++|+++||-|| +|++.
T Consensus 417 ~gsmG~glpaaiGa~lA~----pdr~Vv~i~GDG~f~m~--~~EL~Ta~r~~lpvv~iV~NN~~yg~i 478 (588)
T TIGR01504 417 AGPLGWTIPAALGVCAAD----PKRNVVALSGDYDFQFM--IEELAVGAQHNIPYIHVLVNNAYLGLI 478 (588)
T ss_pred cccccchHhHHHhhhhhC----CCCcEEEEEcchHhhcc--HHHHHHHHHhCCCeEEEEEeCCchHHH
Confidence 366777777777777774 56789999999999888 356999999999987766555 68754
No 90
>TIGR03254 oxalate_oxc oxalyl-CoA decarboxylase. In a number of bacteria, including Oxalobacter formigenes from the human gut, a two-gene operon of oxc (oxalyl-CoA decarboxylase) and frc (formyl-CoA transferase) encodes a system for degrading and therefore detoxifying oxalate. Members of this family are the thiamine pyrophosphate (TPP)-containing enzyme oxalyl-CoA decarboxylase.
Probab=98.12 E-value=4.6e-06 Score=81.26 Aligned_cols=57 Identities=19% Similarity=0.149 Sum_probs=48.2
Q ss_pred cccCCCCchhhhHHHHHhhhcCCCCeEEEEEcCCccchhhHHHHHHHHHHcCCCEEEEEecCC-c
Q 026778 142 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNG-W 205 (233)
Q Consensus 142 ~g~lG~~~~~A~G~A~a~k~~~~~~vvv~~~GDG~~~~G~~~Ealn~A~~~~lPvvfvv~nN~-~ 205 (233)
.|.+|.++|.|+|+++|. ++.|||++|||++.... ..|.+|+.+++|+++||-||+ |
T Consensus 416 ~gsmG~~lpaaiGaala~-----~~~vv~i~GDGsf~m~~--~EL~Ta~r~~l~v~~vV~NN~~~ 473 (554)
T TIGR03254 416 WGVMGIGMGYAIAAAVET-----GKPVVALEGDSAFGFSG--MEVETICRYNLPVCVVIFNNGGI 473 (554)
T ss_pred CCcCCchHHHHHHHHhcC-----CCcEEEEEcCchhcccH--HHHHHHHHcCCCEEEEEEeChhh
Confidence 478999999999999872 57799999999999884 349999999999988887775 5
No 91
>PRK11866 2-oxoacid ferredoxin oxidoreductase subunit beta; Provisional
Probab=98.12 E-value=3.9e-06 Score=75.86 Aligned_cols=62 Identities=27% Similarity=0.417 Sum_probs=49.2
Q ss_pred cccCCCCchhhhHHHHHhhhcCCCCeEEEEEcCC-ccchhhHHHHHHHHHHcCCCEEEEEecCC-ccccc
Q 026778 142 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDG-GTSEGDFHAALNFSAVTEAPVIFICRNNG-WAIST 209 (233)
Q Consensus 142 ~g~lG~~~~~A~G~A~a~k~~~~~~vvv~~~GDG-~~~~G~~~Ealn~A~~~~lPvvfvv~nN~-~ais~ 209 (233)
.+..|.++|.|+|+++|. .+..||++.||| +...|. ..|..|..+++|+++||-||+ |++..
T Consensus 58 ~~~~G~alp~A~GaklA~----Pd~~VV~i~GDG~~f~ig~--~eL~tA~rrn~~i~vIV~nN~~ygmtg 121 (279)
T PRK11866 58 HGIHGRVLPIATGVKWAN----PKLTVIGYGGDGDGYGIGL--GHLPHAARRNVDITYIVSNNQVYGLTT 121 (279)
T ss_pred ccccccHHHHHHHHHHHC----CCCcEEEEECChHHHHccH--HHHHHHHHHCcCcEEEEEEChhhhhhc
Confidence 455688888888888884 467799999999 688884 448999999999988887774 66644
No 92
>TIGR03393 indolpyr_decarb indolepyruvate decarboxylase, Erwinia family. A family of closely related, thiamine pyrophosphate-dependent enzymes includes indolepyruvate decarboxylase (EC 4.1.1.74), phenylpyruvate decarboxylase (EC 4.1.1.43), pyruvate decarboxylase (EC 4.1.1.1), branched-chain alpha-ketoacid decarboxylase, etc.. Members of this group of homologs may overlap in specificity. Within the larger family, this model represents a clade of bacterial indolepyruvate decarboxylases, part of a pathway for biosynthesis of the plant hormone indole-3-acetic acid. Typically, these species interact with plants, as pathogens or as beneficial, root-associated bacteria.
Probab=98.11 E-value=2.3e-06 Score=83.13 Aligned_cols=61 Identities=23% Similarity=0.317 Sum_probs=47.9
Q ss_pred cccCCCCchhhhHHHHHhhhcCCCCeEEEEEcCCccchhhHHHHHHHHHHcCCCEEEEE-ecCCcccc
Q 026778 142 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFIC-RNNGWAIS 208 (233)
Q Consensus 142 ~g~lG~~~~~A~G~A~a~k~~~~~~vvv~~~GDG~~~~G~~~Ealn~A~~~~lPvvfvv-~nN~~ais 208 (233)
.+.+|.++|.|+|+++|. .++.|+|++|||+..... ..|.+|..+++|+++|| +|++|++-
T Consensus 403 ~g~mG~glpaaiGa~la~----p~~~vv~i~GDG~f~m~~--~EL~Ta~~~~lpi~~vV~NN~~y~~i 464 (539)
T TIGR03393 403 WGSIGYTLPAAFGAQTAC----PNRRVILLIGDGSAQLTI--QELGSMLRDKQHPIILVLNNEGYTVE 464 (539)
T ss_pred hhhhhhHHHHHHHHHhcC----CCCCeEEEEcCcHHHhHH--HHHHHHHHcCCCCEEEEEeCCceEEE
Confidence 467777777777777764 577899999999998884 66999999999976666 55578764
No 93
>PLN02573 pyruvate decarboxylase
Probab=98.11 E-value=2.9e-06 Score=83.34 Aligned_cols=62 Identities=21% Similarity=0.249 Sum_probs=50.0
Q ss_pred cccCCCCchhhhHHHHHhhhcCCCCeEEEEEcCCccchhhHHHHHHHHHHcCCCEEEEEecC-Cccccc
Q 026778 142 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNN-GWAIST 209 (233)
Q Consensus 142 ~g~lG~~~~~A~G~A~a~k~~~~~~vvv~~~GDG~~~~G~~~Ealn~A~~~~lPvvfvv~nN-~~ais~ 209 (233)
.|++|.++|.|+|+++|. .++.|||++|||++.... ..|.+|..+++|+++||-|| +|++..
T Consensus 427 ~gsmG~glpaaiGa~lA~----p~r~vv~i~GDG~f~m~~--~EL~Ta~r~~lpvv~vV~NN~~yg~~~ 489 (578)
T PLN02573 427 YGSIGWSVGATLGYAQAA----PDKRVIACIGDGSFQVTA--QDVSTMIRCGQKSIIFLINNGGYTIEV 489 (578)
T ss_pred hhhhhhhhhHHHHHHHhC----CCCceEEEEeccHHHhHH--HHHHHHHHcCCCCEEEEEeCCceeEEE
Confidence 477888888888888775 467899999999999884 56999999999987766555 688643
No 94
>PRK06466 acetolactate synthase 3 catalytic subunit; Validated
Probab=98.10 E-value=3.9e-06 Score=82.13 Aligned_cols=61 Identities=25% Similarity=0.269 Sum_probs=48.9
Q ss_pred cccCCCCchhhhHHHHHhhhcCCCCeEEEEEcCCccchhhHHHHHHHHHHcCCCEEEEEecC-Ccccc
Q 026778 142 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNN-GWAIS 208 (233)
Q Consensus 142 ~g~lG~~~~~A~G~A~a~k~~~~~~vvv~~~GDG~~~~G~~~Ealn~A~~~~lPvvfvv~nN-~~ais 208 (233)
.|++|.++|.|+|+++|. .++.|||++|||+....- ..|.+|..+++|+++||-|| +|++-
T Consensus 422 ~gsmG~glpaAiGa~la~----p~r~Vv~i~GDG~f~m~~--~eL~Ta~r~~lpv~ivV~NN~~y~~i 483 (574)
T PRK06466 422 LGTMGFGLPAAMGVKLAF----PDQDVACVTGEGSIQMNI--QELSTCLQYGLPVKIINLNNGALGMV 483 (574)
T ss_pred cchhhchHHHHHHHHHhC----CCCeEEEEEcchhhhccH--HHHHHHHHhCCCeEEEEEeCCccHHH
Confidence 367888888888888775 467899999999999883 56899999999987766555 68763
No 95
>TIGR02418 acolac_catab acetolactate synthase, catabolic. Acetolactate synthase (EC 2.2.1.6) combines two molecules of pyruvate to yield 2-acetolactate with the release of CO2. This reaction may be involved in either valine biosynthesis (biosynthetic) or conversion of pyruvate to acetoin and possibly to 2,3-butanediol (catabolic). The biosynthetic type, described by TIGR00118, is also capable of forming acetohydroxybutyrate from pyruvate and 2-oxobutyrate for isoleucine biosynthesis. The family described here, part of the same larger family of thiamine pyrophosphate-dependent enzymes (pfam00205, pfam02776) is the catabolic form, generally found associated with in species with acetolactate decarboxylase and usually found in the same operon. The model may not encompass all catabolic acetolactate synthases, but rather one particular clade in the larger TPP-dependent enzyme family.
Probab=98.09 E-value=4.8e-06 Score=80.81 Aligned_cols=61 Identities=28% Similarity=0.403 Sum_probs=48.2
Q ss_pred cccCCCCchhhhHHHHHhhhcCCCCeEEEEEcCCccchhhHHHHHHHHHHcCCCEEEEEec-CCcccc
Q 026778 142 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRN-NGWAIS 208 (233)
Q Consensus 142 ~g~lG~~~~~A~G~A~a~k~~~~~~vvv~~~GDG~~~~G~~~Ealn~A~~~~lPvvfvv~n-N~~ais 208 (233)
.+.+|.++|.|+|+++|. .++.|+|++|||+..... ..|.+|..+++|+++||-| ++|++-
T Consensus 407 ~g~mG~~lpaaiGa~la~----~~~~vv~i~GDGsf~m~~--~eL~Ta~~~~lpi~ivV~NN~~y~~~ 468 (539)
T TIGR02418 407 MQTLGVALPWAIGAALVR----PNTKVVSVSGDGGFLFSS--MELETAVRLKLNIVHIIWNDNGYNMV 468 (539)
T ss_pred ccccccHHHHHHHHHHhC----CCCcEEEEEcchhhhchH--HHHHHHHHhCCCeEEEEEECCcchHH
Confidence 467888888888888775 467799999999999873 5588999999998666655 568764
No 96
>TIGR03457 sulphoacet_xsc sulfoacetaldehyde acetyltransferase. Members of this protein family are sulfoacetaldehyde acetyltransferase, an enzyme of taurine utilization. Taurine, or 2-aminoethanesulfonate, can be used by bacteria as a source of carbon, nitrogen, and sulfur.
Probab=98.08 E-value=5.5e-06 Score=81.16 Aligned_cols=61 Identities=23% Similarity=0.334 Sum_probs=48.5
Q ss_pred cccCCCCchhhhHHHHHhhhcCCCCeEEEEEcCCccchhhHHHHHHHHHHcCCCEEEEEecC-Ccccc
Q 026778 142 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNN-GWAIS 208 (233)
Q Consensus 142 ~g~lG~~~~~A~G~A~a~k~~~~~~vvv~~~GDG~~~~G~~~Ealn~A~~~~lPvvfvv~nN-~~ais 208 (233)
.|.+|.++|.|+|+++|. .++.|+|++|||++.... ..|.+|..++||+++||-|| +|++.
T Consensus 429 ~g~mG~~lpaaiGa~la~----p~~~Vv~i~GDG~f~m~~--~eL~Tavr~~lpvi~vV~NN~~yg~i 490 (579)
T TIGR03457 429 FGNCGYAFPTIIGAKIAA----PDRPVVAYAGDGAWGMSM--NEIMTAVRHDIPVTAVVFRNRQWGAE 490 (579)
T ss_pred cccccchHHHHHhhhhhC----CCCcEEEEEcchHHhccH--HHHHHHHHhCCCeEEEEEECcchHHH
Confidence 367888888877777774 467899999999999984 66999999999987766555 68754
No 97
>PLN02470 acetolactate synthase
Probab=98.07 E-value=5.8e-06 Score=81.15 Aligned_cols=60 Identities=32% Similarity=0.316 Sum_probs=48.3
Q ss_pred cccCCCCchhhhHHHHHhhhcCCCCeEEEEEcCCccchhhHHHHHHHHHHcCCCEEEEEecC-Cccc
Q 026778 142 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNN-GWAI 207 (233)
Q Consensus 142 ~g~lG~~~~~A~G~A~a~k~~~~~~vvv~~~GDG~~~~G~~~Ealn~A~~~~lPvvfvv~nN-~~ai 207 (233)
.|.+|.++|.|+|+++|. .++.|+|++|||+..... ..|.+|..+++|+++||-|| +|++
T Consensus 425 ~g~mG~glpaaiGa~la~----p~~~Vv~i~GDG~f~m~~--~eL~Ta~~~~l~v~ivV~NN~~yg~ 485 (585)
T PLN02470 425 LGAMGFGLPAAIGAAAAN----PDAIVVDIDGDGSFIMNI--QELATIHVENLPVKIMVLNNQHLGM 485 (585)
T ss_pred cccccchHHHHHHHHHhC----CCCcEEEEEccchhhccH--HHHHHHHHhCCCeEEEEEeCCcchH
Confidence 377888888888888775 466799999999999984 66999999999987766555 5754
No 98
>PRK06048 acetolactate synthase 3 catalytic subunit; Reviewed
Probab=98.07 E-value=6.1e-06 Score=80.55 Aligned_cols=60 Identities=25% Similarity=0.341 Sum_probs=48.4
Q ss_pred ccCCCCchhhhHHHHHhhhcCCCCeEEEEEcCCccchhhHHHHHHHHHHcCCCEEEEEecC-Ccccc
Q 026778 143 STIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNN-GWAIS 208 (233)
Q Consensus 143 g~lG~~~~~A~G~A~a~k~~~~~~vvv~~~GDG~~~~G~~~Ealn~A~~~~lPvvfvv~nN-~~ais 208 (233)
|.+|.++|.|+|+++|. .++.|+|++|||++.... ..|.+|..+++|+++||-|| +|++.
T Consensus 414 g~mG~glpaaiGa~la~----p~~~Vv~i~GDG~f~m~~--~eL~Ta~~~~l~i~~vV~NN~~y~~i 474 (561)
T PRK06048 414 GTMGYGFPAAIGAKVGK----PDKTVIDIAGDGSFQMNS--QELATAVQNDIPVIVAILNNGYLGMV 474 (561)
T ss_pred cccccHHHHHHHHHHhC----CCCcEEEEEeCchhhccH--HHHHHHHHcCCCeEEEEEECCccHHH
Confidence 67888888888888774 467899999999999884 56999999999987766555 68654
No 99
>PRK11865 pyruvate ferredoxin oxidoreductase subunit beta; Provisional
Probab=98.07 E-value=1.3e-05 Score=73.07 Aligned_cols=71 Identities=21% Similarity=0.245 Sum_probs=61.6
Q ss_pred ccccccccccCCCCchhhhHHHHHhhhcCCCCeEEEEEcCCccchhhHHHHHHHHHHcCCCEEEEEecCC-cc
Q 026778 135 KHNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNG-WA 206 (233)
Q Consensus 135 ~~~~~~~~g~lG~~~~~A~G~A~a~k~~~~~~vvv~~~GDG~~~~G~~~Ealn~A~~~~lPvvfvv~nN~-~a 206 (233)
..++...++..|.+.+.|.|++.|.+..+++..+||+.|||++..--+ ++|..|...+.++++||-||+ |+
T Consensus 61 ~~~~~~~~~~fg~~~a~a~Gi~~a~~~~~~~~~Vv~~~GDG~~~dIG~-~~L~~a~~r~~ni~~ivlDNe~Y~ 132 (299)
T PRK11865 61 AWNVPWIHVAFENAAAVASGIERAVKALGKKVNVVAIGGDGGTADIGF-QSLSGAMERGHNILYLMYDNEAYM 132 (299)
T ss_pred ccccccchhhhcchHHHHHHHHHHHHHhcCCCeEEEEeCCchHhhccH-HHHHHHHHcCCCeEEEEECCcccc
Confidence 456677888999999999999999988777778999999998866555 889999999999999999996 54
No 100
>PRK08617 acetolactate synthase; Reviewed
Probab=98.06 E-value=5.4e-06 Score=80.63 Aligned_cols=61 Identities=23% Similarity=0.297 Sum_probs=47.8
Q ss_pred cccCCCCchhhhHHHHHhhhcCCCCeEEEEEcCCccchhhHHHHHHHHHHcCCCEEEEEecC-Ccccc
Q 026778 142 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNN-GWAIS 208 (233)
Q Consensus 142 ~g~lG~~~~~A~G~A~a~k~~~~~~vvv~~~GDG~~~~G~~~Ealn~A~~~~lPvvfvv~nN-~~ais 208 (233)
.+.+|.++|.|+|+++|. .++.|+|++|||++.... ..|.+|..+++|+++||-|| .|++-
T Consensus 413 ~g~mG~~lpaaiGa~la~----p~~~vv~i~GDGsf~m~~--~eL~Ta~~~~lpv~~vV~NN~~~~~~ 474 (552)
T PRK08617 413 MQTLGVALPWAIAAALVR----PGKKVVSVSGDGGFLFSA--MELETAVRLKLNIVHIIWNDGHYNMV 474 (552)
T ss_pred cccccccccHHHhhHhhc----CCCcEEEEEechHHhhhH--HHHHHHHHhCCCeEEEEEECCccchH
Confidence 467788788888777764 567899999999999884 55899999999987666555 67653
No 101
>TIGR03394 indol_phenyl_DC indolepyruvate/phenylpyruvate decarboxylase, Azospirillum family. A family of closely related, thiamine pyrophosphate-dependent enzymes includes indolepyruvate decarboxylase (EC 4.1.1.74), phenylpyruvate decarboxylase (EC 4.1.1.43), pyruvate decarboxylase (EC 4.1.1.1), branched-chain alpha-ketoacid decarboxylase, etc.. Members of this group of homologs may overlap in specificity. This model represents a clade that includes a Azospirillum brasilense member active as both phenylpyruvate decarboxylase and indolepyruvate decarboxylase.
Probab=98.04 E-value=3.9e-06 Score=81.71 Aligned_cols=62 Identities=21% Similarity=0.240 Sum_probs=48.7
Q ss_pred ccccCCCCchhhhHHHHHhhhcCCCCeEEEEEcCCccchhhHHHHHHHHHHcCCCEEEEEecC-Cccccc
Q 026778 141 VSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNN-GWAIST 209 (233)
Q Consensus 141 ~~g~lG~~~~~A~G~A~a~k~~~~~~vvv~~~GDG~~~~G~~~Ealn~A~~~~lPvvfvv~nN-~~ais~ 209 (233)
..+.+|.++|.|+|+++|. ++.+++++|||+.... -..|.+|..+++|+++||-|| +|++-.
T Consensus 401 ~~g~mG~glpaaiGa~lA~-----~~r~v~i~GDG~f~m~--~~EL~Ta~r~~lpv~~vV~NN~~y~~~~ 463 (535)
T TIGR03394 401 YYAGMGFGVPAGIGAQCTS-----GKRILTLVGDGAFQMT--GWELGNCRRLGIDPIVILFNNASWEMLR 463 (535)
T ss_pred ccchhhhHHHHHHHHHhCC-----CCCeEEEEeChHHHhH--HHHHHHHHHcCCCcEEEEEECCccceee
Confidence 3478999999999999884 2345789999999888 356999999999987766555 688653
No 102
>PRK11867 2-oxoglutarate ferredoxin oxidoreductase subunit beta; Reviewed
Probab=98.04 E-value=5.6e-06 Score=75.05 Aligned_cols=111 Identities=20% Similarity=0.249 Sum_probs=71.4
Q ss_pred CcccccccCcchHHHHHHHHhcc-----CCCCeEecCCccchhhhhcCCCHHHHHHHHhcCCCCCCCCCCCCcccCCCcc
Q 026778 62 GRISFYLTTSGEEAINIASAAAI-----KNDDFVVPQYREPGVLLWRGFSMQEFANQCFGNKADYGKGRQMPIHYGSNKH 136 (233)
Q Consensus 62 G~i~~~~~~~GqEa~~vg~~~aL-----~~~D~~~~~yR~~~~~l~rG~~~~~~l~e~~g~~~g~~~Gr~~~~H~~~~~~ 136 (233)
.+...|.++-|+-.+.-.+..+| .|+|.++.+ +-|-.- + .+ ++ .
T Consensus 14 ~~~~~~CpGCg~~~il~~l~~al~~l~~~p~d~vvvs--diGc~~-~-~~-----------------------~~----~ 62 (286)
T PRK11867 14 DQEPRWCPGCGDGSILAALQRALAELGLDPENVAVVS--GIGCSG-R-LP-----------------------GY----I 62 (286)
T ss_pred CCCCCcCCCCCCHHHHHHHHHHHHHhCCCCCcEEEEe--CCcccc-c-cC-----------------------cc----c
Confidence 34456888889888766666666 366655544 222110 0 00 00 1
Q ss_pred ccccccccCCCCchhhhHHHHHhhhcCCCCeEEEEEcCCc-cchhhHHHHHHHHHHcCCCEEEEEecC-Cccccc
Q 026778 137 NYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGG-TSEGDFHAALNFSAVTEAPVIFICRNN-GWAIST 209 (233)
Q Consensus 137 ~~~~~~g~lG~~~~~A~G~A~a~k~~~~~~vvv~~~GDG~-~~~G~~~Ealn~A~~~~lPvvfvv~nN-~~ais~ 209 (233)
+..+..+..|.++|.|+|+++|. .+..|||+.|||+ ...|.-+ |..|..+++|+++||-|| .|++..
T Consensus 63 ~~~~~~g~mG~alpaAiGaklA~----Pd~~VV~i~GDG~~f~mg~~e--L~tA~r~nl~i~vIV~NN~~yGmt~ 131 (286)
T PRK11867 63 NTYGFHTIHGRALAIATGLKLAN----PDLTVIVVTGDGDALAIGGNH--FIHALRRNIDITYILFNNQIYGLTK 131 (286)
T ss_pred cccchhhhhhcHHHHHHHHHHhC----CCCcEEEEeCccHHHhCCHHH--HHHHHHhCCCcEEEEEeCHHHhhhc
Confidence 11122356788888888888774 5778999999995 7777433 888999999987777666 587644
No 103
>COG2609 AceE Pyruvate dehydrogenase complex, dehydrogenase (E1) component [Energy production and conversion]
Probab=98.04 E-value=0.00026 Score=70.69 Aligned_cols=73 Identities=21% Similarity=0.235 Sum_probs=59.8
Q ss_pred ccccCCCCchhhhHHHHHhhhc-------CCCCeEEEEEcCCccchhhHHHHHHHHHHcCC-CEEEEEecCCcccccccc
Q 026778 141 VSSTIATQLPHAVGAAYALKMD-------RKDACAVTYFGDGGTSEGDFHAALNFSAVTEA-PVIFICRNNGWAISTPIS 212 (233)
Q Consensus 141 ~~g~lG~~~~~A~G~A~a~k~~-------~~~~vvv~~~GDG~~~~G~~~Ealn~A~~~~l-Pvvfvv~nN~~ais~~~~ 212 (233)
.++++|-+...|+=-|.-.|+. .+++.++||+|||++.|+...+|+.+|+.++| +++|||+.|.-....|+.
T Consensus 190 pTvSmGLGp~~aiyqArf~kYL~~RGl~~~~~~~v~afLGDgEmDEpes~gAi~~A~re~LdNlifVincNlQrLDgpVr 269 (887)
T COG2609 190 PTVSMGLGPIQAIYQARFLKYLEARGLKDTSDQKVWAFLGDGEMDEPESRGAITEAAREKLDNLIFVINCNLQRLDGPVR 269 (887)
T ss_pred CcccccccHHHHHHHHHHHHHHHhcCCcCCCCCeEEEEecCcccCCchhhHHHHHHHHhcCCceEEEEecchhhcCCccc
Confidence 5566776666666555555552 35789999999999999999999999999999 689999999999988875
Q ss_pred c
Q 026778 213 D 213 (233)
Q Consensus 213 ~ 213 (233)
.
T Consensus 270 g 270 (887)
T COG2609 270 G 270 (887)
T ss_pred C
Confidence 4
No 104
>PRK08978 acetolactate synthase 2 catalytic subunit; Reviewed
Probab=98.04 E-value=7e-06 Score=79.81 Aligned_cols=60 Identities=25% Similarity=0.299 Sum_probs=48.2
Q ss_pred ccCCCCchhhhHHHHHhhhcCCCCeEEEEEcCCccchhhHHHHHHHHHHcCCCEEEEE-ecCCcccc
Q 026778 143 STIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFIC-RNNGWAIS 208 (233)
Q Consensus 143 g~lG~~~~~A~G~A~a~k~~~~~~vvv~~~GDG~~~~G~~~Ealn~A~~~~lPvvfvv-~nN~~ais 208 (233)
|.+|.++|.|+|+++|. .++.|+|++|||+..... ..|.+|..+++|+++|| +|++|++-
T Consensus 401 g~mG~glpaAiGa~la~----p~~~vv~i~GDG~f~~~~--~eL~ta~~~~l~v~ivV~NN~~~~~~ 461 (548)
T PRK08978 401 GTMGFGLPAAIGAQVAR----PDDTVICVSGDGSFMMNV--QELGTIKRKQLPVKIVLLDNQRLGMV 461 (548)
T ss_pred hhhhchHHHHHHHHHhC----CCCcEEEEEccchhhccH--HHHHHHHHhCCCeEEEEEeCCccHHH
Confidence 77888888888888774 467899999999999884 55999999999987666 45568764
No 105
>PRK08979 acetolactate synthase 3 catalytic subunit; Validated
Probab=98.03 E-value=9.1e-06 Score=79.61 Aligned_cols=60 Identities=28% Similarity=0.359 Sum_probs=48.0
Q ss_pred ccCCCCchhhhHHHHHhhhcCCCCeEEEEEcCCccchhhHHHHHHHHHHcCCCEEEEEecC-Ccccc
Q 026778 143 STIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNN-GWAIS 208 (233)
Q Consensus 143 g~lG~~~~~A~G~A~a~k~~~~~~vvv~~~GDG~~~~G~~~Ealn~A~~~~lPvvfvv~nN-~~ais 208 (233)
+.+|.++|.|+|+++|. .++.|+|++|||+..... ..|.+|..+++|+++||-|| +|++.
T Consensus 421 g~mG~glpaaiGa~la~----p~~~vv~i~GDG~f~m~~--~EL~Ta~r~~lpv~~vV~NN~~y~~i 481 (572)
T PRK08979 421 GTMGFGLPAAMGVKFAM----PDETVVCVTGDGSIQMNI--QELSTALQYDIPVKIINLNNRFLGMV 481 (572)
T ss_pred ccccchhhHHHhhhhhC----CCCeEEEEEcchHhhccH--HHHHHHHHcCCCeEEEEEeCCccHHH
Confidence 57788788777777774 467899999999999884 55999999999987777555 57754
No 106
>PRK07525 sulfoacetaldehyde acetyltransferase; Validated
Probab=98.02 E-value=6.5e-06 Score=80.88 Aligned_cols=62 Identities=21% Similarity=0.287 Sum_probs=48.2
Q ss_pred ccccCCCCchhhhHHHHHhhhcCCCCeEEEEEcCCccchhhHHHHHHHHHHcCCCEEEEEecC-Ccccc
Q 026778 141 VSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNN-GWAIS 208 (233)
Q Consensus 141 ~~g~lG~~~~~A~G~A~a~k~~~~~~vvv~~~GDG~~~~G~~~Ealn~A~~~~lPvvfvv~nN-~~ais 208 (233)
..+.+|.++|.|+|+++|. .++.|||++|||++..+ . ..|.+|..+++|+++||-|| +|++.
T Consensus 433 ~~g~mG~glp~aiGa~la~----p~r~vv~i~GDG~f~~~-~-~el~Ta~~~~lpv~ivV~NN~~y~~~ 495 (588)
T PRK07525 433 SFGNCGYAFPAIIGAKIAC----PDRPVVGFAGDGAWGIS-M-NEVMTAVRHNWPVTAVVFRNYQWGAE 495 (588)
T ss_pred cccccccHHHHHHHHHHhC----CCCcEEEEEcCchHhcc-H-HHHHHHHHhCCCeEEEEEeCchhHHH
Confidence 3467888888888877774 46789999999999998 3 34779999999987777555 78753
No 107
>PRK07418 acetolactate synthase 3 catalytic subunit; Reviewed
Probab=98.02 E-value=7.4e-06 Score=80.96 Aligned_cols=61 Identities=23% Similarity=0.159 Sum_probs=47.0
Q ss_pred cccCCCCchhhhHHHHHhhhcCCCCeEEEEEcCCccchhhHHHHHHHHHHcCCCEEEEEecC-Ccccc
Q 026778 142 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNN-GWAIS 208 (233)
Q Consensus 142 ~g~lG~~~~~A~G~A~a~k~~~~~~vvv~~~GDG~~~~G~~~Ealn~A~~~~lPvvfvv~nN-~~ais 208 (233)
.+.+|.++|.|+|+++|. .++.|||++|||++... -..|.+|..+++|+++||-|| .|++-
T Consensus 433 ~g~mG~glpaAiGA~lA~----p~r~Vv~i~GDG~f~m~--~~eL~Ta~r~~lpvi~vV~NN~~~g~i 494 (616)
T PRK07418 433 LGTMGFGMPAAMGVKVAL----PDEEVICIAGDASFLMN--IQELGTLAQYGINVKTVIINNGWQGMV 494 (616)
T ss_pred ccccccHHHHHHHHHHhC----CCCcEEEEEcchHhhhh--HHHHHHHHHhCCCeEEEEEECCcchHH
Confidence 366777777777776664 56789999999999987 345899999999988877666 56653
No 108
>COG0028 IlvB Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=98.01 E-value=1.1e-05 Score=79.11 Aligned_cols=65 Identities=29% Similarity=0.359 Sum_probs=49.6
Q ss_pred ccccCCCCchhhhHHHHHhhhcCCCCeEEEEEcCCccchhhHHHHHHHHHHcCCCEEEEEecCC-ccccccc
Q 026778 141 VSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNG-WAISTPI 211 (233)
Q Consensus 141 ~~g~lG~~~~~A~G~A~a~k~~~~~~vvv~~~GDG~~~~G~~~Ealn~A~~~~lPvvfvv~nN~-~ais~~~ 211 (233)
..|++|.++|.|+|++++. .++.|+|+.|||+.... ..-|.+|..+++|+++||-||+ |++-...
T Consensus 406 ~~GtMG~glPaAIGAkla~----P~r~Vv~i~GDG~F~m~--~qEL~Ta~r~~lpv~ivv~nN~~~g~v~~~ 471 (550)
T COG0028 406 GLGTMGFGLPAAIGAKLAA----PDRKVVAIAGDGGFMMN--GQELETAVRYGLPVKIVVLNNGGYGMVRQW 471 (550)
T ss_pred CCccccchHHHHHHHHhhC----CCCcEEEEEcccHHhcc--HHHHHHHHHhCCCEEEEEEECCccccchHH
Confidence 4556666666666665554 57889999999999988 5669999999999988887776 6665443
No 109
>PRK08611 pyruvate oxidase; Provisional
Probab=98.01 E-value=6.9e-06 Score=80.55 Aligned_cols=61 Identities=26% Similarity=0.352 Sum_probs=47.9
Q ss_pred cccCCCCchhhhHHHHHhhhcCCCCeEEEEEcCCccchhhHHHHHHHHHHcCCCEEEEE-ecCCcccc
Q 026778 142 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFIC-RNNGWAIS 208 (233)
Q Consensus 142 ~g~lG~~~~~A~G~A~a~k~~~~~~vvv~~~GDG~~~~G~~~Ealn~A~~~~lPvvfvv-~nN~~ais 208 (233)
.|.+|.++|.|+|+++|. .++.|||++|||+.... -..|.+|..+++|+++|| +|++|++-
T Consensus 407 ~g~mG~glpaaiGa~la~----p~~~Vv~i~GDGsf~m~--~~eL~Ta~r~~l~~iivV~NN~~~g~i 468 (576)
T PRK08611 407 LGTMGCGLPGAIAAKIAF----PDRQAIAICGDGGFSMV--MQDFVTAVKYKLPIVVVVLNNQQLAFI 468 (576)
T ss_pred chhhhhhHHHHHHHHHhC----CCCcEEEEEcccHHhhh--HHHHHHHHHhCCCeEEEEEeCCcchHH
Confidence 367777777777777764 46779999999999998 466899999999976666 55568764
No 110
>PRK05858 hypothetical protein; Provisional
Probab=98.00 E-value=1.2e-05 Score=78.14 Aligned_cols=61 Identities=21% Similarity=0.218 Sum_probs=48.1
Q ss_pred cccCCCCchhhhHHHHHhhhcCCCCeEEEEEcCCccchhhHHHHHHHHHHcCCCEEEEEecC-Ccccc
Q 026778 142 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNN-GWAIS 208 (233)
Q Consensus 142 ~g~lG~~~~~A~G~A~a~k~~~~~~vvv~~~GDG~~~~G~~~Ealn~A~~~~lPvvfvv~nN-~~ais 208 (233)
.|.+|.++|.|+|+++|. .++.+||++|||++... ...|.+|..+++|+++||-|| .|++.
T Consensus 406 ~gsmG~~lp~aiGa~la~----p~r~vv~i~GDG~f~~~--~~eL~Ta~~~~lpi~ivV~NN~~y~~~ 467 (542)
T PRK05858 406 FGCLGTGPGYALAARLAR----PSRQVVLLQGDGAFGFS--LMDVDTLVRHNLPVVSVIGNNGIWGLE 467 (542)
T ss_pred ccccccchhHHHHHHHhC----CCCcEEEEEcCchhcCc--HHHHHHHHHcCCCEEEEEEeCCchhhH
Confidence 467888888888877765 56789999999999877 356899999999987766555 68763
No 111
>TIGR02720 pyruv_oxi_spxB pyruvate oxidase. Members of this family are examples of pyruvate oxidase (EC 1.2.3.3), an enzyme with FAD and TPP as cofactors that catalyzes the reaction pyruvate + phosphate + O2 + H2O = acetyl phosphate + CO2 + H2O2. It should not be confused with pyruvate dehydrogenase [cytochrome] (EC 1.2.2.2) as in E. coli PoxB, although the E. coli enzyme is closely homologous and has pyruvate oxidase as an alternate name.
Probab=97.99 E-value=1e-05 Score=79.31 Aligned_cols=61 Identities=25% Similarity=0.248 Sum_probs=46.6
Q ss_pred cccCCCCchhhhHHHHHhhhcCCCCeEEEEEcCCccchhhHHHHHHHHHHcCCCEEEEE-ecCCcccc
Q 026778 142 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFIC-RNNGWAIS 208 (233)
Q Consensus 142 ~g~lG~~~~~A~G~A~a~k~~~~~~vvv~~~GDG~~~~G~~~Ealn~A~~~~lPvvfvv-~nN~~ais 208 (233)
.+.+|.++|.|+|+++| ..++.|++++|||++... -..|.+|..+++|+++|| +||+|++.
T Consensus 407 ~gsmG~glpaAiGa~la----~p~r~Vv~i~GDGsf~m~--~~eL~Tavr~~lpi~~VV~NN~~yg~i 468 (575)
T TIGR02720 407 FATMGVGVPGAIAAKLN----YPDRQVFNLAGDGAFSMT--MQDLLTQVQYHLPVINIVFSNCTYGFI 468 (575)
T ss_pred cchhhchHHHHHHHHHh----CCCCcEEEEEcccHHHhh--HHHHHHHHHhCCCeEEEEEeCCccHHH
Confidence 35666666666666665 457789999999999997 455999999999987765 55569864
No 112
>PRK06456 acetolactate synthase catalytic subunit; Reviewed
Probab=97.99 E-value=9.1e-06 Score=79.40 Aligned_cols=62 Identities=27% Similarity=0.300 Sum_probs=49.8
Q ss_pred cccCCCCchhhhHHHHHhhhcCCCCeEEEEEcCCccchhhHHHHHHHHHHcCCCEEEEEecC-Cccccc
Q 026778 142 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNN-GWAIST 209 (233)
Q Consensus 142 ~g~lG~~~~~A~G~A~a~k~~~~~~vvv~~~GDG~~~~G~~~Ealn~A~~~~lPvvfvv~nN-~~ais~ 209 (233)
.|.+|.++|.|+|+++|. .++.++|++|||++.... ..|.+|..+++|+++||-|| +|++..
T Consensus 420 ~g~mG~glpaAiGa~la~----p~~~vv~i~GDG~f~m~~--~eL~Ta~~~~l~i~ivV~NN~~yg~i~ 482 (572)
T PRK06456 420 MGTMGFGLPAAMGAKLAR----PDKVVVDLDGDGSFLMTG--TNLATAVDEHIPVISVIFDNRTLGLVR 482 (572)
T ss_pred cccccchhHHHHHHHHhC----CCCeEEEEEccchHhcch--HHHHHHHHhCCCeEEEEEECCchHHHH
Confidence 477888888888888775 467899999999999884 56899999999987766555 688653
No 113
>PRK06457 pyruvate dehydrogenase; Provisional
Probab=97.98 E-value=8.2e-06 Score=79.46 Aligned_cols=62 Identities=23% Similarity=0.401 Sum_probs=48.8
Q ss_pred cccCCCCchhhhHHHHHhhhcCCCCeEEEEEcCCccchhhHHHHHHHHHHcCCCEEEEE-ecCCcccc
Q 026778 142 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFIC-RNNGWAIS 208 (233)
Q Consensus 142 ~g~lG~~~~~A~G~A~a~k~~~~~~vvv~~~GDG~~~~G~~~Ealn~A~~~~lPvvfvv-~nN~~ais 208 (233)
.|.+|.++|.|+|+++|.. +++.|+|++|||++.... ..|.+|..++||+++|| +|++|++-
T Consensus 395 ~g~mG~glpaaiGa~la~p---~~~~Vv~i~GDGsf~~~~--~eL~Ta~~~~lpi~ivV~NN~~~g~i 457 (549)
T PRK06457 395 LGSMGIGVPGSVGASFAVE---NKRQVISFVGDGGFTMTM--MELITAKKYDLPVKIIIYNNSKLGMI 457 (549)
T ss_pred cchhhhhHHHHHHHHhcCC---CCCeEEEEEcccHHhhhH--HHHHHHHHHCCCeEEEEEECCccchH
Confidence 4778888888888887752 167899999999999884 56899999999986666 55578764
No 114
>cd02018 TPP_PFOR Thiamine pyrophosphate (TPP family), Pyruvate ferredoxin/flavodoxin oxidoreductase (PFOR) subfamily, TPP-binding module; PFOR catalyzes the oxidative decarboxylation of pyruvate to form acetyl-CoA, a crucial step in many metabolic pathways. Archaea, anaerobic bacteria and eukaryotes that lack mitochondria (and therefore pyruvate dehydrogenase) use PFOR to oxidatively decarboxylate pyruvate, with ferredoxin or flavodoxin as the electron acceptor. PFORs can be homodimeric, heterodimeric, or heterotetrameric, depending on the organism. These enzymes are dependent on TPP and a divalent metal cation as cofactors.
Probab=97.98 E-value=4.4e-06 Score=73.56 Aligned_cols=66 Identities=24% Similarity=0.287 Sum_probs=46.3
Q ss_pred ccccCCCCchhhhHHHHHhh-hcCCCCeEEEEEcCCccc-hhhHHHHHHHHHHcCCCEEEEEecCC-cccc
Q 026778 141 VSSTIATQLPHAVGAAYALK-MDRKDACAVTYFGDGGTS-EGDFHAALNFSAVTEAPVIFICRNNG-WAIS 208 (233)
Q Consensus 141 ~~g~lG~~~~~A~G~A~a~k-~~~~~~vvv~~~GDG~~~-~G~~~Ealn~A~~~~lPvvfvv~nN~-~ais 208 (233)
..+.+|.++|.|+|+++|.- ....++.|||+.|||++. .| +.| +..+..+++|+++||-||+ |++-
T Consensus 62 ~~g~mG~GlpaAiGA~~a~~~~~~p~~~Vv~i~GDG~~~~~g-~~~-l~ta~~~~l~i~ivVlNN~~yg~~ 130 (237)
T cd02018 62 DANAVASGLKRGLKARFPKDRELDKKKDVVVIGGDGATYDIG-FGA-LSHSLFRGEDITVIVLDNEVYSNT 130 (237)
T ss_pred CHHHHHHHHHHHHHhhcccccccCCCCcEEEEeCchHHHhcc-HHH-HHHHHHcCCCeEEEEECCccccCC
Confidence 34788888888888887721 113567899999999874 34 233 4455679999988877774 7643
No 115
>PRK11869 2-oxoacid ferredoxin oxidoreductase subunit beta; Provisional
Probab=97.97 E-value=1e-05 Score=73.24 Aligned_cols=111 Identities=15% Similarity=0.186 Sum_probs=72.6
Q ss_pred cCcc-cccccCcchHHHHHHHHhccC-----CCCeEecCCccchhhhhcCCCHHHHHHHHhcCCCCCCCCCCCCcccCCC
Q 026778 61 QGRI-SFYLTTSGEEAINIASAAAIK-----NDDFVVPQYREPGVLLWRGFSMQEFANQCFGNKADYGKGRQMPIHYGSN 134 (233)
Q Consensus 61 ~G~i-~~~~~~~GqEa~~vg~~~aL~-----~~D~~~~~yR~~~~~l~rG~~~~~~l~e~~g~~~g~~~Gr~~~~H~~~~ 134 (233)
.-++ ..|.++-|+=.+--++..|+. |+|.++.+ |-|.. .+ +..++ +
T Consensus 3 ~~~~~~~~CpGCg~~~i~~~~~~a~~~l~~~p~d~ivvs--diG~~-~~-------~~~~~-~----------------- 54 (280)
T PRK11869 3 PEKYDIAWCPGCGNFGIRNALMKALSELNLKPRQVVIVS--GIGQA-AK-------MPHYI-N----------------- 54 (280)
T ss_pred cccCCCCCCcCCCCHHHHHHHHHHHHHcCCCCCCEEEEe--CchHh-hh-------HHHHc-c-----------------
Confidence 4455 478899999888777777763 56776654 22211 11 11111 0
Q ss_pred ccccccccccCCCCchhhhHHHHHhhhcCCCCeEEEEEcCCccc-hhhHHHHHHHHHHcCCCEEEEEecCC-cccc
Q 026778 135 KHNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTS-EGDFHAALNFSAVTEAPVIFICRNNG-WAIS 208 (233)
Q Consensus 135 ~~~~~~~~g~lG~~~~~A~G~A~a~k~~~~~~vvv~~~GDG~~~-~G~~~Ealn~A~~~~lPvvfvv~nN~-~ais 208 (233)
.....+..|.++|.|+|+.+| ..++.|||+.|||++. .| -..|..|+.+++|+++||-||+ |++.
T Consensus 55 ---~~~~~~~mG~alp~AiGaklA----~pd~~VVai~GDG~~~~iG--~~eL~tA~r~nl~i~~IV~NN~~Yg~t 121 (280)
T PRK11869 55 ---VNGFHTLHGRAIPAATAVKAT----NPELTVIAEGGDGDMYAEG--GNHLIHAIRRNPDITVLVHNNQVYGLT 121 (280)
T ss_pred ---CCCCCcccccHHHHHHHHHHH----CCCCcEEEEECchHHhhCc--HHHHHHHHHhCcCcEEEEEECHHHhhh
Confidence 001223478888888888666 4568899999999965 33 3458999999999988887774 7653
No 116
>TIGR02177 PorB_KorB 2-oxoacid:acceptor oxidoreductase, beta subunit, pyruvate/2-ketoisovalerate family. Several related four-subunit enzymes may exist in the same species. This model describes a subfamily of beta subunits, representing mostly pyruvate and 2-ketoisovalerate specific enzymes.
Probab=97.96 E-value=1.2e-05 Score=72.94 Aligned_cols=60 Identities=18% Similarity=0.254 Sum_probs=44.8
Q ss_pred cCCCCchhhhHHHHHhhhcCCCCeEEEEEcCCcc-chhhHHHHHHHHHHcCCCEEEEEecC-Cccccc
Q 026778 144 TIATQLPHAVGAAYALKMDRKDACAVTYFGDGGT-SEGDFHAALNFSAVTEAPVIFICRNN-GWAIST 209 (233)
Q Consensus 144 ~lG~~~~~A~G~A~a~k~~~~~~vvv~~~GDG~~-~~G~~~Ealn~A~~~~lPvvfvv~nN-~~ais~ 209 (233)
..|.++|.|+|+++| ..+..|||+.|||+. ..|. ..|..|+.+++|+++||-|| .|++..
T Consensus 54 ~mG~alPaAiGaklA----~Pd~~VVai~GDG~f~~mg~--~eL~tA~r~nl~I~vIVlNN~~yGmt~ 115 (287)
T TIGR02177 54 LHGRALPVATGIKLA----NPHLKVIVVGGDGDLYGIGG--NHFVAAGRRNVDITVIVHDNQVYGLTK 115 (287)
T ss_pred ccccHHHHHHHHHHH----CCCCcEEEEeCchHHHhccH--HHHHHHHHhCcCeEEEEEECHHHHhhh
Confidence 356666666666666 457889999999995 3663 44889999999998888766 476654
No 117
>PRK06276 acetolactate synthase catalytic subunit; Reviewed
Probab=97.96 E-value=1.2e-05 Score=78.91 Aligned_cols=60 Identities=28% Similarity=0.365 Sum_probs=48.2
Q ss_pred ccCCCCchhhhHHHHHhhhcCCCCeEEEEEcCCccchhhHHHHHHHHHHcCCCEEEEEecC-Ccccc
Q 026778 143 STIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNN-GWAIS 208 (233)
Q Consensus 143 g~lG~~~~~A~G~A~a~k~~~~~~vvv~~~GDG~~~~G~~~Ealn~A~~~~lPvvfvv~nN-~~ais 208 (233)
+.+|.++|.|+|+++|. .++.|+|++|||++.... ..|.+|..+++|+++||-|| +|++.
T Consensus 419 gsmG~~lpaaiGa~la~----p~~~Vv~i~GDGsf~m~~--~eL~Ta~~~~lpv~~vV~NN~~~g~~ 479 (586)
T PRK06276 419 GTMGFGFPAAIGAKVAK----PDANVIAITGDGGFLMNS--QELATIAEYDIPVVICIFDNRTLGMV 479 (586)
T ss_pred cccccchhHHHhhhhhc----CCCcEEEEEcchHhhccH--HHHHHHHHhCCCeEEEEEeCCchHHH
Confidence 67888888888888874 356799999999999873 55999999999987777555 57754
No 118
>PRK08322 acetolactate synthase; Reviewed
Probab=97.95 E-value=1.2e-05 Score=77.91 Aligned_cols=61 Identities=21% Similarity=0.371 Sum_probs=48.4
Q ss_pred cccCCCCchhhhHHHHHhhhcCCCCeEEEEEcCCccchhhHHHHHHHHHHcCCCEEEEE-ecCCcccc
Q 026778 142 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFIC-RNNGWAIS 208 (233)
Q Consensus 142 ~g~lG~~~~~A~G~A~a~k~~~~~~vvv~~~GDG~~~~G~~~Ealn~A~~~~lPvvfvv-~nN~~ais 208 (233)
.+.+|.++|.|+|+++|. .++.++|++|||++.... ..|.+|..+++|+++|| +|++|++.
T Consensus 405 ~g~mG~~lpaaiGa~la~----p~~~vv~i~GDGsf~m~~--~eL~Ta~~~~lpv~iiV~NN~~~g~~ 466 (547)
T PRK08322 405 LATMGAGLPSAIAAKLVH----PDRKVLAVCGDGGFMMNS--QELETAVRLGLPLVVLILNDNAYGMI 466 (547)
T ss_pred cccccchhHHHHHHHHhC----CCCcEEEEEcchhHhccH--HHHHHHHHhCCCeEEEEEeCCCcchH
Confidence 467888888888888874 467899999999999773 55888999999976665 55578864
No 119
>PRK07282 acetolactate synthase catalytic subunit; Reviewed
Probab=97.89 E-value=1.9e-05 Score=77.28 Aligned_cols=61 Identities=25% Similarity=0.411 Sum_probs=48.3
Q ss_pred cccCCCCchhhhHHHHHhhhcCCCCeEEEEEcCCccchhhHHHHHHHHHHcCCCEEEEEecC-Ccccc
Q 026778 142 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNN-GWAIS 208 (233)
Q Consensus 142 ~g~lG~~~~~A~G~A~a~k~~~~~~vvv~~~GDG~~~~G~~~Ealn~A~~~~lPvvfvv~nN-~~ais 208 (233)
.|++|.++|.|+|+++|. .++.|||++|||+..... ..|.+|..+++|+++||-|| +|++-
T Consensus 417 ~g~mG~glpaaiGa~lA~----p~~~Vv~i~GDG~f~m~~--~eL~Ta~~~~l~i~~vV~NN~~y~~i 478 (566)
T PRK07282 417 LGTMGFGIPAAIGAKIAN----PDKEVILFVGDGGFQMTN--QELAILNIYKVPIKVVMLNNHSLGMV 478 (566)
T ss_pred cccccchhhHhheeheec----CCCcEEEEEcchhhhccH--HHHHHHHHhCCCeEEEEEeCCCchHH
Confidence 477888888888877774 467799999999999884 55999999999987766555 68764
No 120
>PRK09628 oorB 2-oxoglutarate-acceptor oxidoreductase subunit OorB; Reviewed
Probab=97.88 E-value=2e-05 Score=71.19 Aligned_cols=58 Identities=24% Similarity=0.255 Sum_probs=43.4
Q ss_pred cCCCCchhhhHHHHHhhhcCCCCeEEEEEcCCccch-hhHHHHHHHHHHcCCCEEEEEecC-Cccc
Q 026778 144 TIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSE-GDFHAALNFSAVTEAPVIFICRNN-GWAI 207 (233)
Q Consensus 144 ~lG~~~~~A~G~A~a~k~~~~~~vvv~~~GDG~~~~-G~~~Ealn~A~~~~lPvvfvv~nN-~~ai 207 (233)
+.|.++|.|+|+++|. .++.|||+.|||+... |..+ +-.|+.+++|+++||-|| .|++
T Consensus 69 ~~G~alPaAiGaklA~----Pdr~VV~i~GDG~f~~~g~~e--l~ta~r~nlpi~iIV~NN~~yGm 128 (277)
T PRK09628 69 THGRAVAYATGIKLAN----PDKHVIVVSGDGDGLAIGGNH--TIHGCRRNIDLNFILINNFIYGL 128 (277)
T ss_pred ccccHHHHHHHHHHHC----CCCeEEEEECchHHHHhhHHH--HHHHHHhCcCeEEEEEEChHHhc
Confidence 5677777777777774 5788999999999742 4323 556899999988877666 5776
No 121
>PRK05778 2-oxoglutarate ferredoxin oxidoreductase subunit beta; Validated
Probab=97.86 E-value=2.2e-05 Score=71.73 Aligned_cols=113 Identities=20% Similarity=0.217 Sum_probs=72.4
Q ss_pred hcCcc-cccccCcchHHHHHHHHhcc-----CCCCeEecCCccchhhhhcCCCHHHHHHHHhcCCCCCCCCCCCCcccCC
Q 026778 60 RQGRI-SFYLTTSGEEAINIASAAAI-----KNDDFVVPQYREPGVLLWRGFSMQEFANQCFGNKADYGKGRQMPIHYGS 133 (233)
Q Consensus 60 r~G~i-~~~~~~~GqEa~~vg~~~aL-----~~~D~~~~~yR~~~~~l~rG~~~~~~l~e~~g~~~g~~~Gr~~~~H~~~ 133 (233)
|.-++ ..|.++.|+=.+.-++..+| .|+|.++.+ +-|-.- + ...++ .
T Consensus 12 ~~~~~~~~~CpGCg~~~i~~~i~~al~~l~l~p~d~vivs--diG~s~-~-------~~~yl-----------------~ 64 (301)
T PRK05778 12 RYDGLPTTWCPGCGNFGILNAIIQALAELGLDPDKVVVVS--GIGCSS-K-------IPGYF-----------------L 64 (301)
T ss_pred ccCCCCCCCCCCCCChHHHHHHHHHHHHhcCCCCCEEEEe--CCcHhh-h-------hhhhc-----------------c
Confidence 44445 47889999887765555555 467776655 222211 0 00000 0
Q ss_pred CccccccccccCCCCchhhhHHHHHhhhcCCCCeEEEEEcCCcc-chhhHHHHHHHHHHcCCCEEEEEecC-Cccccc
Q 026778 134 NKHNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGT-SEGDFHAALNFSAVTEAPVIFICRNN-GWAIST 209 (233)
Q Consensus 134 ~~~~~~~~~g~lG~~~~~A~G~A~a~k~~~~~~vvv~~~GDG~~-~~G~~~Ealn~A~~~~lPvvfvv~nN-~~ais~ 209 (233)
.....+..|.++|.|+|+++|. .+..|||+.|||++ +.|. ..|..|+.+++|+++||-|| .|++..
T Consensus 65 ----~~~~~g~mG~alpaAiGaklA~----pd~~VV~i~GDG~~~~mg~--~eL~tA~r~nl~i~vIV~NN~~YG~t~ 132 (301)
T PRK05778 65 ----SHGLHTLHGRAIAFATGAKLAN----PDLEVIVVGGDGDLASIGG--GHFIHAGRRNIDITVIVENNGIYGLTK 132 (301)
T ss_pred ----cCccchhhccHHHHHHHHHHHC----CCCcEEEEeCccHHHhccH--HHHHHHHHHCCCcEEEEEeCchhhccc
Confidence 1112255788888888887774 57789999999996 4553 34888999999988877766 476643
No 122
>TIGR03336 IOR_alpha indolepyruvate ferredoxin oxidoreductase, alpha subunit. Indolepyruvate ferredoxin oxidoreductase (IOR) is an alpha 2/beta 2 tetramer related to ketoacid oxidoreductases for pyruvate (1.2.7.1, POR), 2-ketoglutarate (1.2.7.3, KOR), and 2-oxoisovalerate (1.2.7.7, VOR). These multi-subunit enzymes typically are found in anaerobes and are inactiviated by oxygen. IOR in Pyrococcus acts in fermentation of all three aromatic amino acids, following removal of the amino group by transamination. In Methanococcus maripaludis, by contrast, IOR acts in the opposite direction, in pathways of amino acid biosynthesis from phenylacetate, indoleacetate, and p-hydroxyphenylacetate. In M. maripaludis and many other species, iorA and iorB are found next to an apparent phenylacetate-CoA ligase.
Probab=97.86 E-value=2.9e-05 Score=76.67 Aligned_cols=66 Identities=15% Similarity=0.145 Sum_probs=49.0
Q ss_pred ccccccCCCCchhhhHHHHHhhhcCCCCeEEEEEcCCccchhhHHHHHHHHHHcCCCEEEEEecC-Cccccc
Q 026778 139 FTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNN-GWAIST 209 (233)
Q Consensus 139 ~~~~g~lG~~~~~A~G~A~a~k~~~~~~vvv~~~GDG~~~~G~~~Ealn~A~~~~lPvvfvv~nN-~~ais~ 209 (233)
....+.+|.++|.|+|+++|. .++.||+++|||++..... ..|.+|..+++|+++||-|| .|++..
T Consensus 399 ~~~~~~mG~~~~~AiGa~~a~----p~~~Vv~i~GDG~f~~~g~-~eL~tav~~~~~i~~vVlnN~~~g~~~ 465 (595)
T TIGR03336 399 VDTTLCMGASIGVASGLSKAG----EKQRIVAFIGDSTFFHTGI-PGLINAVYNKANITVVILDNRITAMTG 465 (595)
T ss_pred cceeeccCchHHHHhhhhhcC----CCCCEEEEeccchhhhcCH-HHHHHHHHcCCCeEEEEEcCcceeccC
Confidence 334577888888888877764 4677999999999985322 35777999999987777666 687654
No 123
>PRK07449 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene-1-carboxylate synthase; Validated
Probab=97.85 E-value=1.1e-05 Score=78.77 Aligned_cols=59 Identities=29% Similarity=0.249 Sum_probs=46.3
Q ss_pred ccCCCCchhhhHHHHHhhhcCCCCeEEEEEcCCccchhhHHHHHHHHHHcCCCEEEEEecC-Ccccc
Q 026778 143 STIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNN-GWAIS 208 (233)
Q Consensus 143 g~lG~~~~~A~G~A~a~k~~~~~~vvv~~~GDG~~~~G~~~Ealn~A~~~~lPvvfvv~nN-~~ais 208 (233)
+.+|.++|.|+|+++| . ++.|+|++|||+..... ..|.+|..+++|+++||-|| +|++.
T Consensus 425 ~~~G~~lpaaiGaala-~----~~~vv~i~GDGsf~~~~--~eL~Ta~r~~l~i~ivVlNN~g~~~~ 484 (568)
T PRK07449 425 SGIDGLLSTAAGVARA-S----AKPTVALIGDLSFLHDL--NGLLLLKQVPAPLTIVVVNNNGGGIF 484 (568)
T ss_pred cchhhHHHHHHHHHhc-C----CCCEEEEechHHhhcCc--HHHHhhcccCCCeEEEEEECCCCccc
Confidence 5688888888888887 2 56699999999999763 45888999999987766555 58753
No 124
>PRK07789 acetolactate synthase 1 catalytic subunit; Validated
Probab=97.85 E-value=2.8e-05 Score=76.78 Aligned_cols=60 Identities=23% Similarity=0.259 Sum_probs=47.2
Q ss_pred ccCCCCchhhhHHHHHhhhcCCCCeEEEEEcCCccchhhHHHHHHHHHHcCCCEEEEEecC-Ccccc
Q 026778 143 STIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNN-GWAIS 208 (233)
Q Consensus 143 g~lG~~~~~A~G~A~a~k~~~~~~vvv~~~GDG~~~~G~~~Ealn~A~~~~lPvvfvv~nN-~~ais 208 (233)
|++|.++|.|+|+++|. .++.|+|++|||++... -..|.+|..+++|+++||-|| +|++.
T Consensus 447 G~mG~glpaaiGa~la~----p~~~Vv~i~GDG~f~m~--~~eL~Ta~~~~lpv~ivV~NN~~~g~i 507 (612)
T PRK07789 447 GTMGYAVPAAMGAKVGR----PDKEVWAIDGDGCFQMT--NQELATCAIEGIPIKVALINNGNLGMV 507 (612)
T ss_pred ccccchhhhHHhhhccC----CCCcEEEEEcchhhhcc--HHHHHHHHHcCCCeEEEEEECCchHHH
Confidence 56777777777777774 46789999999999887 366999999999986666555 68764
No 125
>PRK08273 thiamine pyrophosphate protein; Provisional
Probab=97.84 E-value=3.1e-05 Score=76.30 Aligned_cols=61 Identities=25% Similarity=0.336 Sum_probs=45.0
Q ss_pred ccCCCCchhhhHHHHHhhhcCCCCeEEEEEcCCccchhhHHHHHHHHHHc-----CCCEEEEEecC-Ccccc
Q 026778 143 STIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVT-----EAPVIFICRNN-GWAIS 208 (233)
Q Consensus 143 g~lG~~~~~A~G~A~a~k~~~~~~vvv~~~GDG~~~~G~~~Ealn~A~~~-----~lPvvfvv~nN-~~ais 208 (233)
|.+|.++|.|+|+++|. .++.|+|++|||++..... .-|.+|..+ ++|+++||-|| +|++-
T Consensus 415 g~mG~glpaaiGa~la~----p~~~Vv~i~GDG~f~m~~~-~EL~Ta~r~~~~~~~lpviivV~NN~~~~~i 481 (597)
T PRK08273 415 ATMGPAVPYAIAAKFAH----PDRPVIALVGDGAMQMNGM-AELITVAKYWRQWSDPRLIVLVLNNRDLNQV 481 (597)
T ss_pred ccccchHHHHHHHHHhC----CCCcEEEEEcchhHhccch-HHHHHHHHHhhcccCCCEEEEEEeCCcchHH
Confidence 56777777777777764 5678999999999965522 347788887 89988877666 57653
No 126
>TIGR03297 Ppyr-DeCO2ase phosphonopyruvate decarboxylase. This family consists of examples of phosphonopyruvate an decarboxylase enzyme that produces phosphonoacetaldehyde (Pald), the second step in the biosynthesis phosphonate-containing compounds. Since the preceding enzymate step, PEP phosphomutase (AepX, TIGR02320) favors the substrate PEP energetically, the decarboxylase is required to drive the reaction in the direction of phosphonate production. Pald is a precursor of natural products including antibiotics like bialaphos and phosphonothricin in Streptomyces species, phosphonate-modified molecules such as the polysaccharide B of Bacteroides fragilis, the phosphonolipids of Tetrahymena pyroformis, the glycosylinositolphospholipids of Trypanosoma cruzi. This gene generally occurs in prokaryotic organisms adjacent to the gene for AepX. Most often an aminotansferase (aepZ) is also present which leads to the production of the most common phosphonate compound, 2-aminoethylphosphonate (A
Probab=97.81 E-value=1.9e-05 Score=73.80 Aligned_cols=60 Identities=23% Similarity=0.207 Sum_probs=47.2
Q ss_pred cccCCCCchhhhHHHHHhhhcCCCCeEEEEEcCCccchhhHHHHHHHHHHcCC-CEEEEEecCC-ccc
Q 026778 142 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEA-PVIFICRNNG-WAI 207 (233)
Q Consensus 142 ~g~lG~~~~~A~G~A~a~k~~~~~~vvv~~~GDG~~~~G~~~Ealn~A~~~~l-Pvvfvv~nN~-~ai 207 (233)
.|++|.++|.|+|+|+|.+ ++.|+|+.|||++.... ..|.+++.+++ |+++||.||+ |+.
T Consensus 220 ~GsMG~a~p~AlG~ala~p----~r~Vv~i~GDGsflm~~--~eL~t~~~~~~~nli~VVlNNg~~~~ 281 (361)
T TIGR03297 220 VGSMGHASQIALGLALARP----DQRVVCLDGDGAALMHM--GGLATIGTQGPANLIHVLFNNGAHDS 281 (361)
T ss_pred echhhhHHHHHHHHHHHCC----CCCEEEEEChHHHHHHH--HHHHHHHHhCCCCeEEEEEcCccccc
Confidence 5889999999999988853 67899999999986542 45788888986 7877776665 654
No 127
>KOG1184 consensus Thiamine pyrophosphate-requiring enzyme [Amino acid transport and metabolism; Coenzyme transport and metabolism]
Probab=97.77 E-value=3.4e-05 Score=74.45 Aligned_cols=67 Identities=21% Similarity=0.281 Sum_probs=56.9
Q ss_pred ccccCCCCchhhhHHHHHhhhcCCCCeEEEEEcCCccchhhHHHHHHHHHHcCCC-EEEEEecCCccccccccc
Q 026778 141 VSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAP-VIFICRNNGWAISTPISD 213 (233)
Q Consensus 141 ~~g~lG~~~~~A~G~A~a~k~~~~~~vvv~~~GDG~~~~G~~~Ealn~A~~~~lP-vvfvv~nN~~ais~~~~~ 213 (233)
..+++|..++.++|+|+|.. +++++.|+|||+++.---+ +..+..|+|| .+|+++|++|-|....+.
T Consensus 413 ~wgsIG~svga~lG~a~a~~----e~rvilfiGDGs~qlTvQe--iStmir~gl~~~if~~NN~GYTIE~~IH~ 480 (561)
T KOG1184|consen 413 QWGSIGWSVGATLGYAQAAP----EKRVILFIGDGSFQLTVQE--ISTMIRWGLKPIIFLINNGGYTIEVEIHD 480 (561)
T ss_pred EEeeccccchhhhhhhhccC----CceEEEEecCccceeeHHH--HHHHHhcCCCcEEEEEeCCceEEEEeecC
Confidence 45678888888888888875 4789999999999998655 8889999995 788999999999987776
No 128
>PLN02980 2-oxoglutarate decarboxylase/ hydro-lyase/ magnesium ion binding / thiamin pyrophosphate binding
Probab=97.07 E-value=0.00064 Score=74.45 Aligned_cols=62 Identities=21% Similarity=0.223 Sum_probs=47.1
Q ss_pred ccccCCC--CchhhhHHHHHhhhcCCCCeEEEEEcCCccchhhHHHHHHHHHHc--CCCEEEEEecC-Cccccc
Q 026778 141 VSSTIAT--QLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVT--EAPVIFICRNN-GWAIST 209 (233)
Q Consensus 141 ~~g~lG~--~~~~A~G~A~a~k~~~~~~vvv~~~GDG~~~~G~~~Ealn~A~~~--~lPvvfvv~nN-~~ais~ 209 (233)
.-|..|. ++|.|+|+++|. ++.|+|++|||+.... -..|.+|..+ ++|+++||-|| +|+|-.
T Consensus 757 ~~G~mG~~G~lpaAIGaala~-----~r~Vv~i~GDGsF~m~--~~EL~Ta~r~~~~lpi~iVV~NN~gggi~~ 823 (1655)
T PLN02980 757 NRGASGIDGLLSTAIGFAVGC-----NKRVLCVVGDISFLHD--TNGLSILSQRIARKPMTILVINNHGGAIFS 823 (1655)
T ss_pred cCCccchhhhHHHHHHHhhcC-----CCCEEEEEehHHHHhh--hhHHHHhhcccCCCCEEEEEEeCCCcHhhh
Confidence 3366666 599999999884 5679999999999887 3558888874 99987766665 576643
No 129
>KOG1185 consensus Thiamine pyrophosphate-requiring enzyme [Amino acid transport and metabolism; Coenzyme transport and metabolism]
Probab=97.07 E-value=0.0011 Score=64.02 Aligned_cols=61 Identities=21% Similarity=0.266 Sum_probs=44.4
Q ss_pred chhhhHHHHHhhhcCCCCeEEEEEcCCccchhhHHHHHHHHHHcCCCEEEEEecC-C-ccccccc
Q 026778 149 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNN-G-WAISTPI 211 (233)
Q Consensus 149 ~~~A~G~A~a~k~~~~~~vvv~~~GDG~~~~G~~~Ealn~A~~~~lPvvfvv~nN-~-~ais~~~ 211 (233)
++...|.|+|.++...++-++|+-||++.--.... +.++.+|||||+.||-|| + |+..+..
T Consensus 432 MGVG~Gfalaaa~~~P~~~V~~veGDsaFGfSaME--~ET~vR~~Lpvv~vV~NN~Giyg~d~~~ 494 (571)
T KOG1185|consen 432 MGVGLGFALAAALAAPDRKVVCVEGDSAFGFSAME--LETFVRYKLPVVIVVGNNNGIYGLDDDG 494 (571)
T ss_pred cccchhHHHHHHhhCCCCeEEEEecCcccCcchhh--HHHHHHhcCCeEEEEecCCcccccCccc
Confidence 34455666666666689999999999998776555 778999999987777655 4 4444433
No 130
>KOG0451 consensus Predicted 2-oxoglutarate dehydrogenase, E1 subunit [Carbohydrate transport and metabolism]
Probab=96.53 E-value=0.026 Score=55.62 Aligned_cols=175 Identities=18% Similarity=0.165 Sum_probs=115.7
Q ss_pred CCCCHHHHHHHHHHHHHHhHHHHHHHHHHhcCcccccccCcchHHHHHHHHhc-c------CCCCeEec-CCccchhhhh
Q 026778 31 VKVSEGVAIKMYNDMVTLQTMDTIFYEAQRQGRISFYLTTSGEEAINIASAAA-I------KNDDFVVP-QYREPGVLLW 102 (233)
Q Consensus 31 ~~~s~e~l~~lyr~M~~~R~~d~~~~~l~r~G~i~~~~~~~GqEa~~vg~~~a-L------~~~D~~~~-~yR~~~~~l~ 102 (233)
..+.+|++.++-+.|+.+..||.-+...+..=| -..+.|.|..- |...- | +-.|+++. -||+.--++.
T Consensus 152 e~l~keEr~~i~~Lmlksq~fD~FlatKFpTvK---RYGgEGAESM~-aFF~eLl~~sa~~~ie~viigmpHRGRlnLlt 227 (913)
T KOG0451|consen 152 EQLGKEERCEIAELMLKSQAFDNFLATKFPTVK---RYGGEGAESML-AFFWELLRDSAQANIEHVIIGMPHRGRLNLLT 227 (913)
T ss_pred HHhhHHHHHHHHHHHHhhhhHHHHHHhccchhh---hhccccHHHHH-HHHHHHHHHHHhcCcceEEEeccccCcchHHH
Confidence 357788889999999999999987655332200 12344555542 22221 2 34577776 4898765553
Q ss_pred --cCCCHHHHHHHHhcCCCCC------------------CCCCCCCcccCCCccccccccccCCCCchhhhHHHHHhhhc
Q 026778 103 --RGFSMQEFANQCFGNKADY------------------GKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMD 162 (233)
Q Consensus 103 --rG~~~~~~l~e~~g~~~g~------------------~~Gr~~~~H~~~~~~~~~~~~g~lG~~~~~A~G~A~a~k~~ 162 (233)
..+||..++..+-|.+.=+ -+|...+.| .-+.+..+++-+--|.|+|-+-+.+..
T Consensus 228 ~Ll~fpP~~mFRK~~G~sEFpE~~~A~gDVlSHl~sS~dykg~~~~lh-----vtMlpNPSHLEAvNPVAmGKtR~rqqs 302 (913)
T KOG0451|consen 228 ALLNFPPAKMFRKLSGASEFPEDIEAMGDVLSHLHSSEDYKGLGKKLH-----VTMLPNPSHLEAVNPVAMGKTRSRQQS 302 (913)
T ss_pred HHhcCCHHHHHHHhcCcccCchhhhHHHHHHHHhhhhhhhcccCCceE-----EEecCChhhhhccCchhhcchhHHHHh
Confidence 5789999999988876422 123333333 234566778888889999988876542
Q ss_pred CC-------------CC-eEEEEEcCCcc-chhhHHHHHHHHHH--cCC-CEEEEEecCCcccccccccc
Q 026778 163 RK-------------DA-CAVTYFGDGGT-SEGDFHAALNFSAV--TEA-PVIFICRNNGWAISTPISDQ 214 (233)
Q Consensus 163 ~~-------------~~-vvv~~~GDG~~-~~G~~~Ealn~A~~--~~l-Pvvfvv~nN~~ais~~~~~q 214 (233)
.. |. +.+.+.||++. .+|.+||.+|++-+ +.+ --|-+|.||+.+..+|.++-
T Consensus 303 r~~Gdyspd~sa~~Gd~Vlnv~vHGDaaF~GQGiv~E~~~ls~~PHFrvGGsvHLivNNQvgfTtp~~rG 372 (913)
T KOG0451|consen 303 RGEGDYSPDSSAPFGDHVLNVIVHGDAAFAGQGIVQECLNLSYVPHFRVGGSVHLIVNNQVGFTTPGDRG 372 (913)
T ss_pred hcCCCCCCCCcCCCCCceEEEEEecchhhccCcccHHHHhhccCCceeecceEEEEecccccccCccccc
Confidence 11 12 44667899996 58999999999865 344 25788899999999987653
No 131
>PF09364 XFP_N: XFP N-terminal domain; InterPro: IPR018970 Phosphoketolases (PK) are key enzymes of the pentose phosphate pathway of heterofermentative and facultative homofermentative lactic acid bacteria and of the D-fructose 6-phosphate shunt of bifidobacteria. PK activity has been sporadically reported in other microorganisms including eukaryotic yeasts. Xylulose-5-phosphate/fructose-6-phosphate phosphoketolase is a thiamine diphosphate (ThdP)-dependent enzyme found in bacteria such as Bifidobacterium sp [, ]. This enzyme has dual-specificity with the following catalytic activities: 4.1.2.9 from EC: xylose 5-P + Pi = acetyl-P + glyeraldehyde-3-P 4.1.2.22 from EC: fructose-6-P + Pi = acetyl-P + erythrose-4-P Phosphoketolases are distantly related to transketolases, e.g. IPR005475 from INTERPRO.; PDB: 3AI7_B 3AHC_A 3AHJ_A 3AHG_A 3AHE_A 3AHI_A 3AHD_A 3AHF_A 3AHH_A.
Probab=96.30 E-value=0.0061 Score=57.07 Aligned_cols=136 Identities=23% Similarity=0.263 Sum_probs=66.5
Q ss_pred cccccCcchHHHHHHHHhccC--CCCeEecCCccchhh--hh--------------cCC---CHHHHHHHHhcCCCCCCC
Q 026778 65 SFYLTTSGEEAINIASAAAIK--NDDFVVPQYREPGVL--LW--------------RGF---SMQEFANQCFGNKADYGK 123 (233)
Q Consensus 65 ~~~~~~~GqEa~~vg~~~aL~--~~D~~~~~yR~~~~~--l~--------------rG~---~~~~~l~e~~g~~~g~~~ 123 (233)
|-|-++-|+-.+-+-+...++ .-|.++-.=-+||.. ++ .+. -+.+++.++ .-.
T Consensus 48 GHWGt~PGlnfiyahlNrlI~~~~~~~~~v~GpGHg~pai~A~~~LeGs~se~yp~~~~d~~Gl~~L~~~F-S~P----- 121 (379)
T PF09364_consen 48 GHWGTSPGLNFIYAHLNRLIRKYDLDMIYVMGPGHGGPAILANLYLEGSYSEFYPDISQDEEGLRRLFRQF-SFP----- 121 (379)
T ss_dssp S-TTTHHHHHHHHHHHHHHHHHHTB-B--EESSGGGHHHHHHHHHHHSHHHHHSTTS-SSHHHHHHHHHHB-TST-----
T ss_pred cccCCCccHHHHHHHHHHHHHhcCCceEEEecCCCCchhhhhhhhhcCccccccCCCCCCHHHHHHHHHhC-CCC-----
Confidence 455556666665544444443 345666555566631 11 011 244555543 221
Q ss_pred CCCCCcccCCCccccccccccCCCCchhhhHHHHHhhhcCCCCeEEEEEcCCccchhhHHHHHHHHHHc-C----CCEEE
Q 026778 124 GRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVT-E----APVIF 198 (233)
Q Consensus 124 Gr~~~~H~~~~~~~~~~~~g~lG~~~~~A~G~A~a~k~~~~~~vvv~~~GDG~~~~G~~~Ealn~A~~~-~----lPvvf 198 (233)
| +.+.|.+..-.|-.-.-|-||-.+++|.|+ -+.+.|-+++|++|||+..+|-.-.+ +.+..+ + =-|+=
T Consensus 122 g-GipSH~~p~tPGsIhEGGELGYaLshA~GA----~~DnPdliv~~vvGDGEaETGplA~s-Wh~~kflnP~~dGaVLP 195 (379)
T PF09364_consen 122 G-GIPSHVSPETPGSIHEGGELGYALSHAFGA----VFDNPDLIVACVVGDGEAETGPLAAS-WHSNKFLNPATDGAVLP 195 (379)
T ss_dssp T-SB-SSS-TTSTT-S---SSTS-HHHHHHHH----HTT-TT-EEEEEEETTGGGSHHHHHH-GGGGGSS-TTTS-EEEE
T ss_pred C-CCccccCcCCCCccCcCcchhhHHHHHhhc----ccCCCCeEEEEEecCCcccCCccccc-ccccceeCcccCceeec
Confidence 1 245676554455444455555555555555 45678899999999999999942211 112222 1 12555
Q ss_pred EEecCCcccccccc
Q 026778 199 ICRNNGWAISTPIS 212 (233)
Q Consensus 199 vv~nN~~ais~~~~ 212 (233)
|.-=|+|.|+-|+-
T Consensus 196 ILhLNG~KI~~pTi 209 (379)
T PF09364_consen 196 ILHLNGYKISNPTI 209 (379)
T ss_dssp EEEE-SBSSSSB-H
T ss_pred eEEecCccccCCeE
Confidence 77889999998863
No 132
>COG0567 SucA 2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, and related enzymes [Energy production and conversion]
Probab=95.58 E-value=0.55 Score=48.74 Aligned_cols=177 Identities=15% Similarity=0.137 Sum_probs=119.8
Q ss_pred CCCCCHHHHHHHHHHHHHHhHHHHHHHHHHh-cCcccccccCcchHHHHHHHHhcc------CCCCeEec-CCccchhhh
Q 026778 30 FVKVSEGVAIKMYNDMVTLQTMDTIFYEAQR-QGRISFYLTTSGEEAINIASAAAI------KNDDFVVP-QYREPGVLL 101 (233)
Q Consensus 30 ~~~~s~e~l~~lyr~M~~~R~~d~~~~~l~r-~G~i~~~~~~~GqEa~~vg~~~aL------~~~D~~~~-~yR~~~~~l 101 (233)
.+.++.|+.+.+++++...=-||+-+-..+- +.| ++-.|-|+.--++-..+ .-.++++. .||+.=-.|
T Consensus 169 ~~~~~~e~k~~~l~~L~~ae~fE~fl~~kf~g~KR----FslEG~eslip~l~~~i~~~~~~G~~~vviGMaHRGRLNvL 244 (906)
T COG0567 169 KPTFTAEEKKAILKRLTAAEGFERFLHTKFPGAKR----FSLEGGESLIPMLDELIDRAGKQGVKEVVIGMAHRGRLNVL 244 (906)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHhhccCCCCcc----ccccchhhHHHHHHHHHHHHHhcCcceEEecccccchHHHH
Confidence 4678999999999999999888876544331 222 34466677543333222 34577776 599877666
Q ss_pred h--cCCCHHHHHHHHhcCCCCCCCCCCCCcccCCC-c---------cccccccccCCCCchhhhHHHHHhhhcCC-----
Q 026778 102 W--RGFSMQEFANQCFGNKADYGKGRQMPIHYGSN-K---------HNYFTVSSTIATQLPHAVGAAYALKMDRK----- 164 (233)
Q Consensus 102 ~--rG~~~~~~l~e~~g~~~g~~~Gr~~~~H~~~~-~---------~~~~~~~g~lG~~~~~A~G~A~a~k~~~~----- 164 (233)
. .|.|++.++.|+-|+..-.-.-++-..|.+.. + .-+....++|-.--|+..|.+-|.+-...
T Consensus 245 ~nvlgKp~~~if~eF~g~~~~~~~sGDVKYH~G~~~~~~~~~~~v~l~La~NPSHLE~v~PVV~G~vRa~Qd~~~d~~~~ 324 (906)
T COG0567 245 VNVLGKPYRDIFDEFEGKSAEPDLSGDVKYHLGFSSDRQTDGGKVHLSLAFNPSHLEIVNPVVEGSVRAKQDRLGDTERD 324 (906)
T ss_pred HHHhCCCHHHHHHHhCCCCCCCCcccccccccccccccccCCCeeEEEecCCcchhhhhchhhhcchHhhhhhhccCccc
Confidence 5 69999999999999653221111222333211 1 12233456788888899999998764322
Q ss_pred CCeEEEEEcCCcc-chhhHHHHHHHHHHc--CC-CEEEEEecCCcccccc
Q 026778 165 DACAVTYFGDGGT-SEGDFHAALNFSAVT--EA-PVIFICRNNGWAISTP 210 (233)
Q Consensus 165 ~~vvv~~~GDG~~-~~G~~~Ealn~A~~~--~l-Pvvfvv~nN~~ais~~ 210 (233)
..+.+.+.||.+. .||-+.|.+|+...- .. +.+=+|-||+.+-.|.
T Consensus 325 k~lpiliHGDAAfaGQGVV~Etlnls~~~gysvgGtiHiviNNQiGFTTs 374 (906)
T COG0567 325 KVLPILIHGDAAFAGQGVVAETLNLSRLDGYSVGGTWHIVINNQIGFTTS 374 (906)
T ss_pred eeEEEEEecChhcCCccHHHHHHHhhCCCCcccCCeEEEEEecCCCCCCC
Confidence 2356799999986 689999999999774 44 6788889998887776
No 133
>COG1013 PorB Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, beta subunit [Energy production and conversion]
Probab=95.43 E-value=0.061 Score=49.15 Aligned_cols=64 Identities=19% Similarity=0.144 Sum_probs=51.3
Q ss_pred ccccccCCCCchhhhHHHHHhhhcCCCCeEEEEEcCC-ccchhhHHHHHHHHHHcCCCEEEEEecCC-cccc
Q 026778 139 FTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDG-GTSEGDFHAALNFSAVTEAPVIFICRNNG-WAIS 208 (233)
Q Consensus 139 ~~~~g~lG~~~~~A~G~A~a~k~~~~~~vvv~~~GDG-~~~~G~~~Ealn~A~~~~lPvvfvv~nN~-~ais 208 (233)
....+.-|-+.+.|.|+.+|.+-. .|+++-||| +...|- ..+.-|...+..+.++|-||+ |+..
T Consensus 66 ~~~hs~~gra~a~atGik~A~~~l----~Viv~gGDG~~~dIG~--~~l~h~~~Rn~dit~iv~DNevYgnT 131 (294)
T COG1013 66 PWVHSLHGRAAAVATGIKLANPAL----SVIVIGGDGDAYDIGG--NHLIHALRRNHDITYIVVDNEVYGNT 131 (294)
T ss_pred CceeeccCcchhhHHHHHHhccCC----eEEEEecchhHhhhhh--HHHHHHHHcCCCeEEEEECCeecccC
Confidence 445667888889999998887644 799999999 888884 448889999999988888886 5443
No 134
>COG3960 Glyoxylate carboligase [General function prediction only]
Probab=93.00 E-value=0.17 Score=47.54 Aligned_cols=92 Identities=23% Similarity=0.251 Sum_probs=65.7
Q ss_pred HHHHHHHHhcCCCCCC--------CCCCCCcccCCCcccc-ccccccCCCCchhhhHHHHHhhhcCCCCeEEEEEcCCcc
Q 026778 107 MQEFANQCFGNKADYG--------KGRQMPIHYGSNKHNY-FTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGT 177 (233)
Q Consensus 107 ~~~~l~e~~g~~~g~~--------~Gr~~~~H~~~~~~~~-~~~~g~lG~~~~~A~G~A~a~k~~~~~~vvv~~~GDG~~ 177 (233)
..+-|.+.|||+.-+. .|.+ -.|...|.+-+ .+..||+|..+|.|+|+--| ..++-++++-||=..
T Consensus 375 vyeemn~~fgrd~~yvstiglsqia~aq-flhv~~pr~wincgqagplgwtipaalgv~~a----dp~r~vvalsgdydf 449 (592)
T COG3960 375 VYEEMNKAFGRDVCYVTTIGLSQIAAAQ-FLHVFKPRHWINCGQAGPLGWTIPAALGVCAA----DPKRNVVAISGDYDF 449 (592)
T ss_pred HHHHHHhhcCCceeEEEeccHHHHhhhh-hhhhcCCcceeecCccCCcccccchhhceeec----CCCCceEEeecCchH
Confidence 3455677788875432 1222 24655555433 45789999999999887544 456778999999654
Q ss_pred chhhHHHHHHHHHHcCCCEEEEEecCCc
Q 026778 178 SEGDFHAALNFSAVTEAPVIFICRNNGW 205 (233)
Q Consensus 178 ~~G~~~Ealn~A~~~~lPvvfvv~nN~~ 205 (233)
+- .-|-|..++.+|+|.|-|+-||.|
T Consensus 450 qf--mieelavgaq~k~pyihv~vnnay 475 (592)
T COG3960 450 QF--LIEELAVGAQFKIPYIHVLVNNAY 475 (592)
T ss_pred HH--HHHHHhhhhcccCceEEEEecchH
Confidence 32 357788999999999999999987
No 135
>COG3957 Phosphoketolase [Carbohydrate transport and metabolism]
Probab=92.83 E-value=0.11 Score=52.46 Aligned_cols=83 Identities=23% Similarity=0.353 Sum_probs=55.5
Q ss_pred CCcccCCCccccccccccCCCCchhhhHHHHHhhhcCCCCeEEEEEcCCccchhhHH---HH-HHHHHHcCCCEEEEEec
Q 026778 127 MPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFH---AA-LNFSAVTEAPVIFICRN 202 (233)
Q Consensus 127 ~~~H~~~~~~~~~~~~g~lG~~~~~A~G~A~a~k~~~~~~vvv~~~GDG~~~~G~~~---Ea-ln~A~~~~lPvvfvv~n 202 (233)
.+.|....-.|.....|.+|..+++|.|.|+ ...+-++.|++|||+..+|..- -+ -.++....--|+=|..=
T Consensus 137 i~SH~~petPGsIhEGGeLGy~l~ha~gAa~----d~Pdli~~~vvGDGeaetgplatsWhs~kf~np~~dGavLPIL~l 212 (793)
T COG3957 137 IGSHVAPETPGSIHEGGELGYALSHAYGAAF----DNPDLIVACVVGDGEAETGPLATSWHSNKFLNPARDGAVLPILHL 212 (793)
T ss_pred cccccCCCCCCccCcCcchhHHHHHHHHhhc----CCCCcEEEEEecccccccCccccccccccccCccccCceeeEEEe
Confidence 5668776667777777888887777776665 6678899999999988887421 11 11111112235556777
Q ss_pred CCccccccccc
Q 026778 203 NGWAISTPISD 213 (233)
Q Consensus 203 N~~ais~~~~~ 213 (233)
|+|.|+-|+--
T Consensus 213 NGykI~npT~l 223 (793)
T COG3957 213 NGYKIENPTVL 223 (793)
T ss_pred cceeccCceee
Confidence 99999988643
No 136
>COG4231 Indolepyruvate ferredoxin oxidoreductase, alpha and beta subunits [Energy production and conversion]
Probab=91.78 E-value=0.19 Score=50.12 Aligned_cols=65 Identities=17% Similarity=0.178 Sum_probs=49.7
Q ss_pred ccccccccccCCCCchhhhHHHHHhhhcCCCCeEEEEEcCCccchhhHHHHHHHHHHcCCCEEEEEecCCc
Q 026778 135 KHNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGW 205 (233)
Q Consensus 135 ~~~~~~~~g~lG~~~~~A~G~A~a~k~~~~~~vvv~~~GDG~~~~G~~~Ealn~A~~~~lPvvfvv~nN~~ 205 (233)
+.+-...+-..|+++++|-|++++.. +.+++++|||+....-.- ++-.|...+.+++++|-||.+
T Consensus 420 P~~~~d~t~~mGssig~a~g~~~~~~-----k~~va~iGDsTF~HsGi~-~l~nAV~n~~~~~~vvLdN~~ 484 (640)
T COG4231 420 PLNTVDTTTMMGSSIGIAGGLSFAST-----KKIVAVIGDSTFFHSGIL-ALINAVYNKANILVVVLDNRT 484 (640)
T ss_pred CcchhhhhhhccchhhhccccccccC-----CceEEEeccccccccCcH-HHHHHHhcCCCeEEEEEeccc
Confidence 34444455667777888888877654 679999999998765543 488888899999999999986
No 137
>KOG4166 consensus Thiamine pyrophosphate-requiring enzyme [Amino acid transport and metabolism; Coenzyme transport and metabolism]
Probab=91.55 E-value=0.28 Score=47.42 Aligned_cols=56 Identities=29% Similarity=0.284 Sum_probs=43.7
Q ss_pred ccCCCCchhhhHHHHHhhhcCCCCeEEEEEcCCccchhhHHHHHHHHHHcCCCEEEEEecCC
Q 026778 143 STIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNG 204 (233)
Q Consensus 143 g~lG~~~~~A~G~A~a~k~~~~~~vvv~~~GDG~~~~G~~~Ealn~A~~~~lPvvfvv~nN~ 204 (233)
|..|-++|.|+|...| +.+.+|+-+=||++.+..-.. |..+...++||-+++-||+
T Consensus 524 GtMGfGLPAAIGAsVA----~P~~iViDIDGDaSF~Mt~~E--Lat~rq~~~PVKiLiLNNe 579 (675)
T KOG4166|consen 524 GTMGFGLPAAIGASVA----NPDAIVIDIDGDASFIMTVQE--LATIRQENLPVKILILNNE 579 (675)
T ss_pred cccccCcchhhccccc----CcccEEEeccCCceeeeehHh--hhhhhhcCCceEEEEecch
Confidence 3456667777776655 578899999999999887443 7888889999988888885
No 138
>COG1165 MenD 2-succinyl-6-hydroxy-2,4-cyclohexadiene-1-carboxylate synthase [Coenzyme metabolism]
Probab=91.51 E-value=3.4 Score=41.01 Aligned_cols=183 Identities=17% Similarity=0.163 Sum_probs=93.5
Q ss_pred CeeEEeCCCCCCCCCCCCC----CCCHHHHHHHH------HHHHH--HhHHHHHHHHHHhcCcccccccCcchHHHHHHH
Q 026778 13 PCYRVLDDDGQPFPDSSFV----KVSEGVAIKMY------NDMVT--LQTMDTIFYEAQRQGRISFYLTTSGEEAINIAS 80 (233)
Q Consensus 13 ~~~~vl~~~g~~~~~~~~~----~~s~e~l~~ly------r~M~~--~R~~d~~~~~l~r~G~i~~~~~~~GqEa~~vg~ 80 (233)
..|-++|+.+...++.... ..+..++.+-+ +.-++ .-.+++++.+..++-.-.- ....++ ++..+
T Consensus 306 ~~~~vvd~~~~~~Dp~~~~~~~~~~~v~~~~~~~~~~~~~~~~Wl~~~~~~~~~~~~~v~~~~~~~-~~~e~~--~a~~l 382 (566)
T COG1165 306 IEYWVVDPGGGWLDPSHHATTRLSADVATWARSIHPAGRIRKPWLDEWLALNEKARQAVRDQLAAE-ALTEAH--LAAAL 382 (566)
T ss_pred CcEEEEcCCCCcCCcccccceEEEeehhHhHHHhccccccccHHHHHHHHHHHHHHHHHHHHhccc-CchhhH--HHHHH
Confidence 4678899988877764211 11333333211 22222 2234445444433311111 122222 23345
Q ss_pred HhccCCCCeEecCCccchhhhhcCCCHHHHHHHHhcCCCCCCCCCCCCcccCCCccccccccccCCCCchhhhHHHHHhh
Q 026778 81 AAAIKNDDFVVPQYREPGVLLWRGFSMQEFANQCFGNKADYGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALK 160 (233)
Q Consensus 81 ~~aL~~~D~~~~~yR~~~~~l~rG~~~~~~l~e~~g~~~g~~~Gr~~~~H~~~~~~~~~~~~g~lG~~~~~A~G~A~a~k 160 (233)
...|.++|.+|-. -.++++++= .++... +| ..++ ...|.-++-|. ++.|+|++.|.+
T Consensus 383 ~~~lp~~~~LFvg---------NSmpVRdvd--~~~~~~---~~--~~v~---sNRGA~GIDG~----vSTA~Gi~~a~~ 439 (566)
T COG1165 383 ADLLPPQDQLFVG---------NSMPVRDVD--ALGQLP---AG--YRVY---SNRGASGIDGT----VSTALGIARATQ 439 (566)
T ss_pred HHhCCCCCeEEEe---------cCchhhhHH--HhccCc---cC--ceee---cCCCccccchh----HHHHhhhhhhcC
Confidence 5667788888764 235555543 355432 11 1222 12232233333 455889988754
Q ss_pred hcCCCCeEEEEEcCCccchhhHHHHHHHHHHcCCCE-EEEEecCCccccccccccccCCCchhhhccccc
Q 026778 161 MDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPV-IFICRNNGWAISTPISDQFRSIPSLPCLSNILT 229 (233)
Q Consensus 161 ~~~~~~vvv~~~GDG~~~~G~~~Ealn~A~~~~lPv-vfvv~nN~~ais~~~~~q~~~~~~~~~~~~~~~ 229 (233)
+.++.++||=++=.. --+|-+......|+ |+|++||+=+|-.-.... ..++.-+++.++|.
T Consensus 440 -----~ptv~liGDLS~lhD--~NgLl~~k~~~~~ltIvv~NNnGGgIF~~Lp~~-~~~~~fe~~F~tPh 501 (566)
T COG1165 440 -----KPTVALIGDLSFLHD--LNGLLLLKKVPQPLTIVVVNNNGGGIFSLLPQA-QSEPVFERLFGTPH 501 (566)
T ss_pred -----CceEEEEechhhhhc--cchHhhcCCCCCCeEEEEEeCCCceeeeeccCC-CCcchHHHhcCCCC
Confidence 349999999665443 12344555666784 777888888887543222 23335666666664
No 139
>cd03377 TPP_PFOR_PNO Thiamine pyrophosphate (TPP family), PFOR_PNO subfamily, TPP-binding module; composed of proteins similar to the single subunit pyruvate ferredoxin oxidoreductase (PFOR) of Desulfovibrio Africanus, present in bacteria and amitochondriate eukaryotes. This subfamily also includes proteins characterized as pyruvate NADP+ oxidoreductase (PNO). These enzymes are dependent on TPP and a divalent metal cation as cofactors. PFOR and PNO catalyze the oxidative decarboxylation of pyruvate to form acetyl-CoA, a crucial step in many metabolic pathways. Archaea, anaerobic bacteria and eukaryotes that lack mitochondria (and therefore pyruvate dehydrogenase) use PFOR to oxidatively decarboxylate pyruvate, with ferredoxin or flavodoxin as the electron acceptor. The PFOR from cyanobacterium Anabaena (NifJ) is required for the transfer of electrons from pyruvate to flavodoxin, which reduces nitrogenase. The facultative anaerobic mitochondrion of the photosynthetic protist Euglena gra
Probab=89.44 E-value=2.4 Score=40.00 Aligned_cols=40 Identities=15% Similarity=0.190 Sum_probs=30.7
Q ss_pred eEEEEEcCC-ccchhhHHHHHHHHHHcCCCEEEEEecCC-cccc
Q 026778 167 CAVTYFGDG-GTSEGDFHAALNFSAVTEAPVIFICRNNG-WAIS 208 (233)
Q Consensus 167 vvv~~~GDG-~~~~G~~~Ealn~A~~~~lPvvfvv~nN~-~ais 208 (233)
-++++.||| +..-| ..++.-|...+.+|.+||-||. |+..
T Consensus 153 ~v~v~gGDG~~ydIG--~~~l~ha~~r~~ni~~iv~DNe~Y~nT 194 (365)
T cd03377 153 SVWIIGGDGWAYDIG--YGGLDHVLASGENVNILVLDTEVYSNT 194 (365)
T ss_pred ceEEEecchhhhccc--hhhHHHHHHcCCCeEEEEECCcccccC
Confidence 789999999 55777 3447778888899988887775 6553
No 140
>KOG0450 consensus 2-oxoglutarate dehydrogenase, E1 subunit [Carbohydrate transport and metabolism]
Probab=87.00 E-value=3.9 Score=41.89 Aligned_cols=176 Identities=14% Similarity=0.166 Sum_probs=116.5
Q ss_pred CCCCCHHHHHHHHHHHHHHhHHHHHHHHHHhc-CcccccccCcchHHHHHHHHhc------cCCCCeEec-CCccchhhh
Q 026778 30 FVKVSEGVAIKMYNDMVTLQTMDTIFYEAQRQ-GRISFYLTTSGEEAINIASAAA------IKNDDFVVP-QYREPGVLL 101 (233)
Q Consensus 30 ~~~~s~e~l~~lyr~M~~~R~~d~~~~~l~r~-G~i~~~~~~~GqEa~~vg~~~a------L~~~D~~~~-~yR~~~~~l 101 (233)
...+|.|+-+-++.++.++-.||+-+...+.. .+. .-.|-|..-=|+-.. |.-++.|+. .||+.=-.|
T Consensus 243 ~~q~s~e~k~~il~RL~~st~FE~FLa~Kw~seKRF----GLEGcE~lIP~mK~iiDrS~elGVe~iviGMpHRGRLNvL 318 (1017)
T KOG0450|consen 243 PMQYSHEQKRVILDRLTRSTRFEEFLATKWPSEKRF----GLEGCEVLIPAMKTIIDRSSELGVESIVIGMPHRGRLNVL 318 (1017)
T ss_pred ccccCHHHHHHHHHHHHHhhHHHHHHhhhCCccccc----cccchhhhhhHHHHHhhhhhhcCchheEecCCccchhHHH
Confidence 45789999999999999999999987665533 222 224455543333222 234566665 489876555
Q ss_pred hc--CCCHHHHHHHHhcCCCCCCCCCC-CCcccCC---Cc---------cccccccccCCCCchhhhHHHHHhhhc----
Q 026778 102 WR--GFSMQEFANQCFGNKADYGKGRQ-MPIHYGS---NK---------HNYFTVSSTIATQLPHAVGAAYALKMD---- 162 (233)
Q Consensus 102 ~r--G~~~~~~l~e~~g~~~g~~~Gr~-~~~H~~~---~~---------~~~~~~~g~lG~~~~~A~G~A~a~k~~---- 162 (233)
+- -.|+++++.|+-|.+.. -.|.+ --.|.+- +. +-+....+++-+.=|..+|=--|.++.
T Consensus 319 ~NVvRKpl~qIfseF~g~~~~-DeGSGDVKYHLG~~~~R~~r~s~k~i~LslVANPSHLEA~DPVV~GKtrA~q~y~~D~ 397 (1017)
T KOG0450|consen 319 ANVVRKPLEQIFSEFSGLEAA-DEGSGDVKYHLGMYYERPNRVSGKNITLSLVANPSHLEAVDPVVMGKTRAEQFYTGDE 397 (1017)
T ss_pred HHHHhhHHHHHHHhccCCCCC-cCCCCceeeeeccccccccccCCceeEEEEecCchhhcccCceeechHHHHHHhcccc
Confidence 53 26999999999884421 11211 1233321 11 123445677888889999988888764
Q ss_pred -CCCCeEEEEEcCCcc-chhhHHHHHHHHHHcC--C-CEEEEEecCCcccccc
Q 026778 163 -RKDACAVTYFGDGGT-SEGDFHAALNFSAVTE--A-PVIFICRNNGWAISTP 210 (233)
Q Consensus 163 -~~~~vvv~~~GDG~~-~~G~~~Ealn~A~~~~--l-Pvvfvv~nN~~ais~~ 210 (233)
++....+.+.||++. .||-++|.+.+...-+ . -.|-||-||+.+..|-
T Consensus 398 ~~~k~m~ILiHGDaaFAgQGVVyET~hls~LP~YtT~GTvHvVvNNQIgFTTD 450 (1017)
T KOG0450|consen 398 EGKKVMGILIHGDAAFAGQGVVYETFHLSDLPSYTTGGTVHVVVNNQIGFTTD 450 (1017)
T ss_pred ccceeEEEEEecchhhccCceEEEeeccccCCCcccCCeEEEEEccccccccC
Confidence 345578999999997 4899999998865432 2 2688999999887763
No 141
>COG3962 Acetolactate synthase [Amino acid transport and metabolism]
Probab=83.91 E-value=1.8 Score=42.38 Aligned_cols=67 Identities=19% Similarity=0.245 Sum_probs=45.3
Q ss_pred ccCCCCchhhhHHHHHhhhcCCCCeEEEEEcCCccchhhHHHHHHHHHHcCCCEEEEEe-cCCccccccccccc
Q 026778 143 STIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICR-NNGWAISTPISDQF 215 (233)
Q Consensus 143 g~lG~~~~~A~G~A~a~k~~~~~~vvv~~~GDG~~~~G~~~Ealn~A~~~~lPvvfvv~-nN~~ais~~~~~q~ 215 (233)
+..|--+.-++|+ |+...++-|++++|||+...= |.=|.++..++..+++++- |-+|+.=-+....+
T Consensus 444 SCMGYEiaG~lG~----K~a~pdreV~vmVGDGSymMl--nSEL~Tsv~~g~Ki~Vvl~DN~GyGCIn~LQm~~ 511 (617)
T COG3962 444 SCMGYEIAGGLGA----KAAEPDREVYVMVGDGSYMML--NSELATSVMLGKKIIVVLLDNRGYGCINRLQMAT 511 (617)
T ss_pred ccccccccccccc----ccCCCCCeEEEEEcccchhhh--hHHHHHHHHcCCeEEEEEECCCCcchhhhhhhhc
Confidence 3444444444443 577788999999999987754 6668889999999766664 44787654443333
No 142
>cd06586 TPP_enzyme_PYR Pyrimidine (PYR) binding domain of thiamine pyrophosphate (TPP)-dependent enzymes. Thiamine pyrophosphate (TPP) family, pyrimidine (PYR) binding domain; found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this group. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. In the case of 2-oxoisovalerate dehydrogenase (2OXO), sulfopyruvate deca
Probab=80.47 E-value=4.4 Score=31.94 Aligned_cols=51 Identities=24% Similarity=0.253 Sum_probs=33.7
Q ss_pred hhHHHHHhhhcCCCCeEEEEEcCCccchhhHHHHHHHHHHcCCCEEEEEecCCc
Q 026778 152 AVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGW 205 (233)
Q Consensus 152 A~G~A~a~k~~~~~~vvv~~~GDG~~~~G~~~Ealn~A~~~~lPvvfvv~nN~~ 205 (233)
|+++|.+.-+.+...++++..|-|.++ ..+++-.|..-++|+|+++-+...
T Consensus 47 a~~~A~G~a~~~~~~v~~~~~gpg~~~---~~~~l~~a~~~~~Pvl~i~~~~~~ 97 (154)
T cd06586 47 AAGAAAGYARAGGPPVVIVTSGTGLLN---AINGLADAAAEHLPVVFLIGARGI 97 (154)
T ss_pred HHHHHHHHHHhhCCEEEEEcCCCcHHH---HHHHHHHHHhcCCCEEEEeCCCCh
Confidence 444444444444434445555888753 467888888889999999976654
No 143
>cd07033 TPP_PYR_DXS_TK_like Pyrimidine (PYR) binding domain of 1-deoxy-D-xylulose-5-phosphate synthase (DXS), transketolase (TK), and related proteins. Thiamine pyrophosphate (TPP) family, pyrimidine (PYR) binding domain of 1-deoxy-D-xylulose-5-phosphate synthase (DXS), transketolase (TK), and the beta subunits of the E1 component of the human pyruvate dehydrogenase complex (E1- PDHc), subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included
Probab=77.81 E-value=5.9 Score=32.24 Aligned_cols=72 Identities=18% Similarity=0.170 Sum_probs=41.4
Q ss_pred hhhhHHHHHhhhcCCCCeEEEEEcCCccchhhHHHHHH-HHHHcCCCEEEEEecCCccc--cccccccccCCCchhhhcc
Q 026778 150 PHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALN-FSAVTEAPVIFICRNNGWAI--STPISDQFRSIPSLPCLSN 226 (233)
Q Consensus 150 ~~A~G~A~a~k~~~~~~vvv~~~GDG~~~~G~~~Ealn-~A~~~~lPvvfvv~nN~~ai--s~~~~~q~~~~~~~~~~~~ 226 (233)
..|.|+|+ .| -..+++.+ .... ...++.+. .++.+++|+++++...++.. ..+++... ...+-+.+
T Consensus 53 g~A~GlA~----~G-~~pi~~~~--~~f~-~ra~dqi~~~~a~~~~pv~~~~~~~g~~~~~~G~tH~~~---~~~a~~~~ 121 (156)
T cd07033 53 GIAAGLAL----HG-LKPFVSTF--SFFL-QRAYDQIRHDVALQNLPVKFVGTHAGISVGEDGPTHQGI---EDIALLRA 121 (156)
T ss_pred HHHHHHHH----CC-CeEEEEEC--HHHH-HHHHHHHHHHHhccCCCeEEEEECCcEecCCCCcccchH---HHHHHhcC
Confidence 34555554 34 23444444 3333 34456655 99999999999998776654 55544321 22334667
Q ss_pred cccccc
Q 026778 227 ILTILL 232 (233)
Q Consensus 227 ~~~~~~ 232 (233)
+|++.|
T Consensus 122 iPg~~v 127 (156)
T cd07033 122 IPNMTV 127 (156)
T ss_pred CCCCEE
Confidence 776653
No 144
>PRK13030 2-oxoacid ferredoxin oxidoreductase; Provisional
Probab=76.87 E-value=3.4 Score=44.51 Aligned_cols=60 Identities=13% Similarity=0.059 Sum_probs=45.9
Q ss_pred ccccCCCCchhhhHHHHHhhhcCCCCeEEEEEcCCccchhhHHHHHHHHHHcCCCEEEEEecCCc
Q 026778 141 VSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGW 205 (233)
Q Consensus 141 ~~g~lG~~~~~A~G~A~a~k~~~~~~vvv~~~GDG~~~~G~~~Ealn~A~~~~lPvvfvv~nN~~ 205 (233)
.....|+....++|++-+. .+..+++++|||+....-.- ||..|...+.+++++|-+|..
T Consensus 466 ~~~~MG~~g~~~~G~a~~~----~~~~v~a~iGDgTf~HSG~~-al~~AV~~~~nit~~IL~N~~ 525 (1159)
T PRK13030 466 GLTQMGGEGVDWIGHAPFT----ETKHVFQNLGDGTYFHSGSL-AIRQAVAAGANITYKILYNDA 525 (1159)
T ss_pred eeeccCccchhhceecccc----CCCCEEEEeccchhhhcCHH-HHHHHHhcCCCeEEEEEeCCc
Confidence 4456777788888887763 23459999999998765544 778888889999999988874
No 145
>PTZ00089 transketolase; Provisional
Probab=65.04 E-value=11 Score=38.03 Aligned_cols=76 Identities=13% Similarity=0.040 Sum_probs=46.3
Q ss_pred chhhhHHHHHhhhcCCCCeEEEEEcCCccchhhHHHHHHHHHHcCCCEEEEEecCCccccccccccccCCCchhhhcccc
Q 026778 149 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSIPSLPCLSNIL 228 (233)
Q Consensus 149 ~~~A~G~A~a~k~~~~~~vvv~~~GDG~~~~G~~~Ealn~A~~~~lPvvfvv~nN~~ais~~~~~q~~~~~~~~~~~~~~ 228 (233)
+..|.|+|.. +.-..+++.+. ...+ ..++.+..++..++||+||+...+.+.+.--..-.+.++++. +.++|
T Consensus 416 v~~AaGlA~~----~G~~P~~~tf~--~Fl~-Ra~dqir~~al~~lpV~~v~thdg~~~g~DG~THq~iedia~-lR~iP 487 (661)
T PTZ00089 416 CAIMNGIAAH----GGFIPFGATFL--NFYG-YALGAVRLAALSHHPVIYVATHDSIGLGEDGPTHQPVETLAL-LRATP 487 (661)
T ss_pred HHHHHHHHHc----CCCeEEEEehH--HHHH-HHHHHHHHHHhcCCCeEEEEeCCceecCCCCCCcccHHHHHH-HhcCC
Confidence 4456666662 11134455443 5655 788889999999999999997776554332222223444443 66677
Q ss_pred cccc
Q 026778 229 TILL 232 (233)
Q Consensus 229 ~~~~ 232 (233)
.+.|
T Consensus 488 n~~V 491 (661)
T PTZ00089 488 NLLV 491 (661)
T ss_pred CcEE
Confidence 6653
No 146
>PRK09193 indolepyruvate ferredoxin oxidoreductase; Validated
Probab=63.30 E-value=10 Score=40.93 Aligned_cols=65 Identities=12% Similarity=0.122 Sum_probs=46.5
Q ss_pred cccccCCCCchhhhHHHHHhhhcCCCCeEEEEEcCCccchhhHHHHHHHHHHcCCCEEEEEecCCc-cccc
Q 026778 140 TVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGW-AIST 209 (233)
Q Consensus 140 ~~~g~lG~~~~~A~G~A~a~k~~~~~~vvv~~~GDG~~~~G~~~Ealn~A~~~~lPvvfvv~nN~~-ais~ 209 (233)
......|+....++|.+-.. .++.+++++|||+....-.- |+..|...+.+++++|-+|.. ++..
T Consensus 478 ~~~~~MG~eg~~~~G~a~f~----~~~hv~a~iGDgTffHSG~~-al~~AV~~~~nit~~IL~N~~vAMTG 543 (1165)
T PRK09193 478 STFTQMGGEGVPWIGQAPFT----DEKHVFQNLGDGTYFHSGLL-AIRAAVAAGVNITYKILYNDAVAMTG 543 (1165)
T ss_pred CeeeccCCcchhhceecccc----CCCcEEEEeccccchhcCHH-HHHHHHhcCCCeEEEEEeCCcccccC
Confidence 34556788888888877752 23559999999998655433 577778888999998877764 4443
No 147
>TIGR00232 tktlase_bact transketolase, bacterial and yeast. This model is designed to capture orthologs of bacterial transketolases. The group includes two from the yeast Saccharomyces cerevisiae but excludes dihydroxyactetone synthases (formaldehyde transketolases) from various yeasts and the even more distant mammalian transketolases. Among the family of thiamine diphosphate-dependent enzymes that includes transketolases, dihydroxyacetone synthases, pyruvate dehydrogenase E1-beta subunits, and deoxyxylulose-5-phosphate synthases, mammalian and bacterial transketolases seem not to be orthologous.
Probab=60.13 E-value=16 Score=36.87 Aligned_cols=53 Identities=15% Similarity=0.223 Sum_probs=36.0
Q ss_pred ccchhhHHHHHHHHHHcCCCEEEEEecCCccc--cccccccccCCCchhhhcccccccc
Q 026778 176 GTSEGDFHAALNFSAVTEAPVIFICRNNGWAI--STPISDQFRSIPSLPCLSNILTILL 232 (233)
Q Consensus 176 ~~~~G~~~Ealn~A~~~~lPvvfvv~nN~~ai--s~~~~~q~~~~~~~~~~~~~~~~~~ 232 (233)
...+ ..++++.+++..++||+||....+++. ..|++ .+.++++ -+.++|.+.|
T Consensus 430 ~F~~-r~~~~ir~~a~~~lpV~~v~th~g~~~G~dG~TH--q~iedia-~lr~iPn~~v 484 (653)
T TIGR00232 430 MFVD-YARPAIRLAALMKLPVIYVYTHDSIGVGEDGPTH--QPIEQLA-SLRAIPNLSV 484 (653)
T ss_pred HHHH-HHHHHHHHHHhcCCCEEEEEeCCccCCCCCCccc--CCHHHHH-HHhcCCCCEE
Confidence 3444 668899999999999999997766554 44555 3455543 3567777654
No 148
>PRK11892 pyruvate dehydrogenase subunit beta; Provisional
Probab=60.05 E-value=18 Score=35.23 Aligned_cols=47 Identities=19% Similarity=0.189 Sum_probs=32.9
Q ss_pred HHHHHHHHH--------HcCCCEEEEEecCCccccccccccccCCCchhhhcccccccc
Q 026778 182 FHAALNFSA--------VTEAPVIFICRNNGWAISTPISDQFRSIPSLPCLSNILTILL 232 (233)
Q Consensus 182 ~~Ealn~A~--------~~~lPvvfvv~nN~~ais~~~~~q~~~~~~~~~~~~~~~~~~ 232 (233)
+..-.|.++ .+++||+|+..|.+.+...+ ++.. ...+=+.++|++.|
T Consensus 229 ~dQI~n~~ak~~~~sgg~~~~pVv~~g~~G~~~~~G~---hhs~-~d~a~~~~iPgl~V 283 (464)
T PRK11892 229 IDQIINSAAKTLYMSGGQMGCPIVFRGPNGAAARVAA---QHSQ-DYAAWYSHIPGLKV 283 (464)
T ss_pred HHHHHHHHhHHhhhcCCccCCCEEEEecCCCCCCCCC---cccc-CHHHHHhhCCCCEE
Confidence 444557777 88999999999887655333 3333 33577888988765
No 149
>TIGR00204 dxs 1-deoxy-D-xylulose-5-phosphate synthase. DXP synthase is a thiamine diphosphate-dependent enzyme related to transketolase and the pyruvate dehydrogenase E1-beta subunit. By an acyloin condensation of pyruvate with glyceraldehyde 3-phosphate, it produces 1-deoxy-D-xylulose 5-phosphate, a precursor of thiamine diphosphate (TPP), pyridoxal phosphate, and the isoprenoid building block isopentenyl diphosphate (IPP).
Probab=58.22 E-value=22 Score=35.79 Aligned_cols=74 Identities=14% Similarity=0.202 Sum_probs=42.2
Q ss_pred chhhhHHHHHhhhcCCCCeEEEEEcCCccchhhHHHHHHHHHHcCCCEEEEEecCCcccc-ccccccccCCCchhhhccc
Q 026778 149 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAIS-TPISDQFRSIPSLPCLSNI 227 (233)
Q Consensus 149 ~~~A~G~A~a~k~~~~~~vvv~~~GDG~~~~G~~~Ealn~A~~~~lPvvfvv~nN~~ais-~~~~~q~~~~~~~~~~~~~ 227 (233)
++.|+|+|+ .|. ..+++++ ....+=.|..-.|.++..++||+|++...++.-. .+++.+ .+++ +=+.++
T Consensus 365 vg~AaGlA~----~G~-~Pvv~~~--a~Fl~ra~dQi~~~~a~~~lpV~i~~~~~G~~g~dG~tH~~--~~di-a~lr~i 434 (617)
T TIGR00204 365 VTFAAGMAI----EGY-KPFVAIY--STFLQRAYDQVVHDVCIQKLPVLFAIDRAGIVGADGETHQG--AFDI-SYLRCI 434 (617)
T ss_pred HHHHHHHHH----CCC-EEEEEec--HHHHHHHHHHHHHHHHhcCCCEEEEEECCCcCCCCCccccc--chHH-HHHhcC
Confidence 334555554 332 3344444 4455533334447788999999999998876422 344333 2333 457777
Q ss_pred ccccc
Q 026778 228 LTILL 232 (233)
Q Consensus 228 ~~~~~ 232 (233)
|++.|
T Consensus 435 Pgl~V 439 (617)
T TIGR00204 435 PNMVI 439 (617)
T ss_pred CCcEE
Confidence 77654
No 150
>cd07034 TPP_PYR_PFOR_IOR-alpha_like Pyrimidine (PYR) binding domain of pyruvate ferredoxin oxidoreductase (PFOR), indolepyruvate ferredoxin oxidoreductase alpha subunit (IOR-alpha), and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain, of pyruvate ferredoxin oxidoreductase (PFOR), indolepyruvate ferredoxin oxidoreductase (IOR) alpha subunit (IOR-alpha), and related proteins, subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domains have a common fold, but do not share strong sequence conservation. Th
Probab=57.11 E-value=21 Score=28.56 Aligned_cols=49 Identities=20% Similarity=0.213 Sum_probs=31.7
Q ss_pred hhHHHHHhhhcCCCCeEEEEEcCCccchhhHHHHHHHHHHcCCCEEEEEecCC
Q 026778 152 AVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNG 204 (233)
Q Consensus 152 A~G~A~a~k~~~~~~vvv~~~GDG~~~~G~~~Ealn~A~~~~lPvvfvv~nN~ 204 (233)
|+++|.+..+.+.. ++++.-|-|.++ .-.+|-.|...+.|+|+++-+-.
T Consensus 53 A~~~A~g~~r~~~~-v~~~~~gpG~~n---~~~~l~~a~~~~~P~v~i~g~~~ 101 (160)
T cd07034 53 AAEAAIGASAAGAR-AMTATSGPGLNL---MAEALYLAAGAELPLVIVVAQRP 101 (160)
T ss_pred HHHHHHHHHhhCCc-EEEeeCcchHHH---HHHHHHHHHhCCCCEEEEEeeCC
Confidence 34444444333333 667777888776 34677778788899999986543
No 151
>PF01380 SIS: SIS domain SIS domain web page.; InterPro: IPR001347 The SIS (Sugar ISomerase) domain is a phosphosugar-binding domain [] found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars possibly by binding to the end-product of the pathway.; GO: 0005529 sugar binding, 0005975 carbohydrate metabolic process; PDB: 3TBF_C 2V4M_A 2ZJ4_A 2ZJ3_A 3FKJ_A 3ODP_A 3EUA_H 1VIV_A 1M3S_B 1TZB_A ....
Probab=56.49 E-value=30 Score=26.11 Aligned_cols=40 Identities=28% Similarity=0.357 Sum_probs=30.7
Q ss_pred CCCCeEEEEEcCCccchhhHHHHHHHHHHcCCCEEEEEecCC
Q 026778 163 RKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNG 204 (233)
Q Consensus 163 ~~~~vvv~~~GDG~~~~G~~~Ealn~A~~~~lPvvfvv~nN~ 204 (233)
+++.+++++--.|.+. +..|.+..|...+.|+|.++.+..
T Consensus 52 ~~~d~vi~is~sg~~~--~~~~~~~~ak~~g~~vi~iT~~~~ 91 (131)
T PF01380_consen 52 DPDDLVIIISYSGETR--ELIELLRFAKERGAPVILITSNSE 91 (131)
T ss_dssp STTEEEEEEESSSTTH--HHHHHHHHHHHTTSEEEEEESSTT
T ss_pred cccceeEeeeccccch--hhhhhhHHHHhcCCeEEEEeCCCC
Confidence 3556777777777664 458899999999999999886543
No 152
>PRK13029 2-oxoacid ferredoxin oxidoreductase; Provisional
Probab=52.58 E-value=20 Score=38.95 Aligned_cols=64 Identities=13% Similarity=0.073 Sum_probs=45.1
Q ss_pred ccccCCCCchhhhHHHHHhhhcCCCCeEEEEEcCCccchhhHHHHHHHHHHcCCCEEEEEecCCc-cccc
Q 026778 141 VSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGW-AIST 209 (233)
Q Consensus 141 ~~g~lG~~~~~A~G~A~a~k~~~~~~vvv~~~GDG~~~~G~~~Ealn~A~~~~lPvvfvv~nN~~-ais~ 209 (233)
.....|+....++|.+-.. ++..++.++|||+....-.- |+..|..-+.+++++|-+|.. ++..
T Consensus 493 ~~~~MGgeg~~~~G~a~f~----~~~hv~aniGDgTffHSG~~-alr~AV~~~~nit~kIL~N~avAMTG 557 (1186)
T PRK13029 493 GFSQMGGEGVAWIGQMPFS----RRRHVFQNLGDGTYFHSGLL-AIRQAIAAGVNITYKILYNDAVAMTG 557 (1186)
T ss_pred eeeccCcchhhheeecccC----CCCCEEEEeccccchhcCHH-HHHHHHhcCCCEEEEEEeCcchhccC
Confidence 3455777777777777552 23459999999998665433 577788888999998888864 4443
No 153
>PLN02790 transketolase
Probab=52.13 E-value=28 Score=35.26 Aligned_cols=49 Identities=24% Similarity=0.343 Sum_probs=33.2
Q ss_pred hHHHHHHHHHHcCCCEEEEEecCCcccc--ccccccccCCCchhhhcccccccc
Q 026778 181 DFHAALNFSAVTEAPVIFICRNNGWAIS--TPISDQFRSIPSLPCLSNILTILL 232 (233)
Q Consensus 181 ~~~Ealn~A~~~~lPvvfvv~nN~~ais--~~~~~q~~~~~~~~~~~~~~~~~~ 232 (233)
...+++..++..++||+||....+.+.+ .|++ .+.++++ -+.++|.+.|
T Consensus 431 ~~~~~ir~~al~~lpV~~v~thdg~~~G~DG~TH--q~iedla-~lR~iPnl~V 481 (654)
T PLN02790 431 YMRAAMRLSALSEAGVIYVMTHDSIGLGEDGPTH--QPIEHLA-SLRAMPNILM 481 (654)
T ss_pred HHHHHHHHHHhcCCCeEEEEECCceeecCCCCCc--ccHHHHH-HhcCCCCcEE
Confidence 5678899999999999999977765543 3433 2344443 3666666543
No 154
>PRK05899 transketolase; Reviewed
Probab=51.90 E-value=28 Score=34.78 Aligned_cols=50 Identities=18% Similarity=0.313 Sum_probs=35.6
Q ss_pred hhHHHHHHHHHHcCCCEEEEEecCCccc--cccccccccCCCchhhhcccccccc
Q 026778 180 GDFHAALNFSAVTEAPVIFICRNNGWAI--STPISDQFRSIPSLPCLSNILTILL 232 (233)
Q Consensus 180 G~~~Ealn~A~~~~lPvvfvv~nN~~ai--s~~~~~q~~~~~~~~~~~~~~~~~~ 232 (233)
...++++.+++..++|++|+....+++. ..+++ | +.+++ +-+.++|++.|
T Consensus 404 ~r~~~qir~~~~~~~pv~~v~~~~G~~~g~~G~tH-q-~~edi-a~~r~iP~~~V 455 (624)
T PRK05899 404 DYARNAIRLAALMKLPVIYVFTHDSIGVGEDGPTH-Q-PVEQL-ASLRAIPNLTV 455 (624)
T ss_pred HHHHHHHHHHHhcCCCEEEEEECCCcCcCCCCCCc-c-cHHHH-HHHHhCCCcEE
Confidence 5778899999999999999999888754 45655 3 23332 24667777654
No 155
>cd07036 TPP_PYR_E1-PDHc-beta_like Pyrimidine (PYR) binding domain of the beta subunits of the E1 components of human pyruvate dehydrogenase complex (E1- PDHc) and related proteins. Thiamine pyrophosphate (TPP) family, pyrimidine (PYR) binding domain of the beta subunits of the E1 components of: human pyruvate dehydrogenase complex (E1- PDHc), the acetoin dehydrogenase complex (ADC), and the branched chain alpha-keto acid dehydrogenase/2-oxoisovalerate dehydrogenase complex (BCADC), subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. The PYR and PP domain
Probab=49.26 E-value=49 Score=27.50 Aligned_cols=36 Identities=11% Similarity=0.091 Sum_probs=23.7
Q ss_pred CCCEEEEEecCCccccccccccccCCCchhhhcccccccc
Q 026778 193 EAPVIFICRNNGWAISTPISDQFRSIPSLPCLSNILTILL 232 (233)
Q Consensus 193 ~lPvvfvv~nN~~ais~~~~~q~~~~~~~~~~~~~~~~~~ 232 (233)
++||++++..-++.-..+++ ..++ .+=+.++|++.|
T Consensus 103 ~~pv~i~~~~gg~~~~G~th---s~~~-~a~lr~iPg~~V 138 (167)
T cd07036 103 KVPIVIRGPNGGGIGGGAQH---SQSL-EAWFAHIPGLKV 138 (167)
T ss_pred cCCEEEEEeCCCCCCcChhh---hhhH-HHHHhcCCCCEE
Confidence 59999999766665445542 2333 477888888764
No 156
>PRK12315 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=48.91 E-value=38 Score=33.73 Aligned_cols=73 Identities=14% Similarity=0.127 Sum_probs=42.8
Q ss_pred hhhhHHHHHhhhcCCCCeEEEEEcCCccchhhHHHHHHHHHHcCCCEEEEEecCCccccccccccccCCCchhhhccccc
Q 026778 150 PHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSIPSLPCLSNILT 229 (233)
Q Consensus 150 ~~A~G~A~a~k~~~~~~vvv~~~GDG~~~~G~~~Ealn~A~~~~lPvvfvv~nN~~ais~~~~~q~~~~~~~~~~~~~~~ 229 (233)
..|+|+|+ .|. ..+++.+.+ .-+-.+.+-.+-++..++||+|++..-++.-..|++.+ .++ .+=+.++|+
T Consensus 334 ~~AaGlA~----~G~-~Pvv~~fs~--Fl~ra~dQi~~d~a~~~lpv~~~~~~~g~~~dG~TH~~--~~D-ia~lr~iPn 403 (581)
T PRK12315 334 AFASGIAA----NGA-RPVIFVNST--FLQRAYDQLSHDLAINNNPAVMIVFGGSISGNDVTHLG--IFD-IPMISNIPN 403 (581)
T ss_pred HHHHHHHH----CcC-eEEEEeeHH--HHHHHHHHHHHHHHhcCCCEEEEEECCcccCCCccccc--cHH-HHHHhcCCC
Confidence 34445554 443 344466655 33333333556678899999999987766544555443 223 256777777
Q ss_pred ccc
Q 026778 230 ILL 232 (233)
Q Consensus 230 ~~~ 232 (233)
+.|
T Consensus 404 l~V 406 (581)
T PRK12315 404 LVY 406 (581)
T ss_pred CEE
Confidence 654
No 157
>cd07035 TPP_PYR_POX_like Pyrimidine (PYR) binding domain of POX and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) and related protiens subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. A polar interaction between the conserved glutamate of the PYR domain and the N1' of the TPP aminopyrimidine ring is shared by most TPP-dependent enzymes, and participates in the activation of TPP. For glyoxylate carboligase, which belongs to this subfamily, but lacks this conserved glutamate, the rate of the initial TPP activation step is reduced but the ensuing steps of the enzymic reaction proceed efficiently. The PYR and PP domains have a common fold, but do not share strong sequence conservatio
Probab=48.85 E-value=31 Score=27.37 Aligned_cols=50 Identities=22% Similarity=0.214 Sum_probs=30.7
Q ss_pred hhHHHHHhhhc-CCCCeEEEEEcCCccchhhHHHHHHHHHHcCCCEEEEEecCC
Q 026778 152 AVGAAYALKMD-RKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNG 204 (233)
Q Consensus 152 A~G~A~a~k~~-~~~~vvv~~~GDG~~~~G~~~Ealn~A~~~~lPvvfvv~nN~ 204 (233)
|+++|.+..+. ++..++++..|=|.++ ..+++-.|...++|+|++.-+..
T Consensus 46 A~~~A~g~~~~~~~~~v~~~~~gpG~~n---~~~~l~~A~~~~~Pll~i~~~~~ 96 (155)
T cd07035 46 AVGMADGYARATGKPGVVLVTSGPGLTN---AVTGLANAYLDSIPLLVITGQRP 96 (155)
T ss_pred HHHHHHHHHHHHCCCEEEEEcCCCcHHH---HHHHHHHHHhhCCCEEEEeCCCc
Confidence 44444444333 3344555555666443 45888899999999999885543
No 158
>PLN02683 pyruvate dehydrogenase E1 component subunit beta
Probab=48.57 E-value=49 Score=30.92 Aligned_cols=46 Identities=22% Similarity=0.226 Sum_probs=29.1
Q ss_pred HHHHHHHHHHcC--------CCEEEEEecCCccc-cccccccccCCCchhhhcccccccc
Q 026778 182 FHAALNFSAVTE--------APVIFICRNNGWAI-STPISDQFRSIPSLPCLSNILTILL 232 (233)
Q Consensus 182 ~~Ealn~A~~~~--------lPvvfvv~nN~~ai-s~~~~~q~~~~~~~~~~~~~~~~~~ 232 (233)
|.+-.|.++.++ +||+|++.+ +... ..+++.+. . .+-+.++|++.|
T Consensus 114 ~dQi~~dva~~~~~~~g~~~~pV~i~~~~-G~~~g~G~tH~~~---~-~a~lr~iPnl~V 168 (356)
T PLN02683 114 IDHIINSAAKTNYMSAGQISVPIVFRGPN-GAAAGVGAQHSQC---F-AAWYSSVPGLKV 168 (356)
T ss_pred HHHHHHHHHHhccccCCCccCCEEEEEeC-CCCCCCCCccccC---H-HHHHhcCCCCEE
Confidence 344456777766 999999988 4322 24444333 2 477888888764
No 159
>cd01460 vWA_midasin VWA_Midasin: Midasin is a member of the AAA ATPase family. The proteins of this family are unified by their common archetectural organization that is based upon a conserved ATPase domain. The AAA domain of midasin contains six tandem AAA protomers. The AAA domains in midasin is followed by a D/E rich domain that is following by a VWA domain. The members of this subgroup have a conserved MIDAS motif. The function of this domain is not exactly known although it has been speculated to play a crucial role in midasin function.
Probab=48.41 E-value=57 Score=29.44 Aligned_cols=37 Identities=27% Similarity=0.285 Sum_probs=31.6
Q ss_pred eEEEEEcCCc--cchhhHHHHHHHHHHcCCCEEEEEecC
Q 026778 167 CAVTYFGDGG--TSEGDFHAALNFSAVTEAPVIFICRNN 203 (233)
Q Consensus 167 vvv~~~GDG~--~~~G~~~Ealn~A~~~~lPvvfvv~nN 203 (233)
.++.++.||. .++|..-+.+..|...++-++||+-+|
T Consensus 166 qlilLISDG~~~~~e~~~~~~~r~a~e~~i~l~~I~ld~ 204 (266)
T cd01460 166 QLLLIISDGRGEFSEGAQKVRLREAREQNVFVVFIIIDN 204 (266)
T ss_pred cEEEEEECCCcccCccHHHHHHHHHHHcCCeEEEEEEcC
Confidence 7899999999 889998888888999999877776555
No 160
>PRK12753 transketolase; Reviewed
Probab=48.14 E-value=34 Score=34.72 Aligned_cols=76 Identities=13% Similarity=-0.048 Sum_probs=46.6
Q ss_pred CchhhhHHHHHhhhcCCCCeEEEEEcCCccchhhHHHHHHHHHHcCCCEEEEEecCCccccccccccccCCCchhhhccc
Q 026778 148 QLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSIPSLPCLSNI 227 (233)
Q Consensus 148 ~~~~A~G~A~a~k~~~~~~vvv~~~GDG~~~~G~~~Ealn~A~~~~lPvvfvv~nN~~ais~~~~~q~~~~~~~~~~~~~ 227 (233)
....|.|+|.- +.-..+++.+. ...+ ..++++.+++..++||+||....+++...--..-.+.++++ -+.++
T Consensus 414 mv~~aaGlA~~----~G~~P~~~tf~--~F~~-r~~~qir~~a~~~l~V~~v~thdg~~~G~DG~THq~iedla-~lR~i 485 (663)
T PRK12753 414 MTAIANGIAHH----GGFVPYTATFL--MFVE-YARNAARMAALMKARQIMVYTHDSIGLGEDGPTHQPVEQLA-SLRLT 485 (663)
T ss_pred HHHHHHHHHHh----CCCeEEEEehH--HHHH-HHHHHHHHHHhcCCCeEEEEeCCCcccCCCCcccccHHHHH-HHhcC
Confidence 44556666662 11123444443 4555 88999999999999999998888776643222333445543 36666
Q ss_pred cccc
Q 026778 228 LTIL 231 (233)
Q Consensus 228 ~~~~ 231 (233)
|.+.
T Consensus 486 Pn~~ 489 (663)
T PRK12753 486 PNFS 489 (663)
T ss_pred CCCE
Confidence 6654
No 161
>PRK07119 2-ketoisovalerate ferredoxin reductase; Validated
Probab=47.00 E-value=21 Score=33.22 Aligned_cols=49 Identities=22% Similarity=0.238 Sum_probs=35.8
Q ss_pred CchhhhHHHHHhhhcCCCCeEEEEEcCCccchhhHHHHHHHHHHcCCCEEEEEecCC
Q 026778 148 QLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNG 204 (233)
Q Consensus 148 ~~~~A~G~A~a~k~~~~~~vvv~~~GDG~~~~G~~~Ealn~A~~~~lPvvfvv~nN~ 204 (233)
.+..|+|.++|-. .+++...+..++-- +|++.+|+-..+|+++++-+-.
T Consensus 60 A~~~a~GAs~aG~------Ra~taTSg~Gl~lm--~E~l~~a~~~e~P~v~v~v~R~ 108 (352)
T PRK07119 60 AINMVYGAAATGK------RVMTSSSSPGISLK--QEGISYLAGAELPCVIVNIMRG 108 (352)
T ss_pred HHHHHHHHHhhCC------CEEeecCcchHHHH--HHHHHHHHHccCCEEEEEeccC
Confidence 4666777777754 37777755555544 8999999999999888776643
No 162
>TIGR01658 EYA-cons_domain eyes absent protein conserved domain. This domain is common to all eyes absent (EYA) homologs. Metazoan EYA's also contain a variable N-terminal domain consisting largely of low-complexity sequences.
Probab=46.26 E-value=33 Score=31.04 Aligned_cols=33 Identities=15% Similarity=0.155 Sum_probs=25.6
Q ss_pred CCCCeEEEEEcCCccchhhHHHHHHHHHHcCCCEEEEEec
Q 026778 163 RKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRN 202 (233)
Q Consensus 163 ~~~~vvv~~~GDG~~~~G~~~Ealn~A~~~~lPvvfvv~n 202 (233)
+++.+++|.+||| +|.-+.|..++.|++=|--.
T Consensus 227 g~p~~~f~~IGDG-------~eEe~aAk~l~wPFw~I~~h 259 (274)
T TIGR01658 227 GHPKVRFCAIGDG-------WEECTAAQAMNWPFVKIDLH 259 (274)
T ss_pred CCCCceEEEeCCC-------hhHHHHHHhcCCCeEEeecC
Confidence 5667999999999 45557788999998755433
No 163
>cd02991 UAS_ETEA UAS family, ETEA subfamily; composed of proteins similar to human ETEA protein, the translation product of a highly expressed gene in the T-cells and eosinophils of atopic dermatitis patients compared with those of normal individuals. ETEA shows homology to Fas-associated factor 1 (FAF1); both containing UAS and UBX (ubiquitin-associated) domains. Compared to FAF1, however, ETEA lacks the ubiquitin-associated UBA domain and a nuclear targeting domain. The function of ETEA is still unknown. A yeast two-hybrid assay showed that it can interact with Fas. Because of its homology to FAF1, it is postulated that ETEA could be involved in modulating Fas-mediated apoptosis of T-cells and eosinophils of atopic dermatitis patients, making them more resistant to apoptosis.
Probab=45.93 E-value=16 Score=28.57 Aligned_cols=55 Identities=9% Similarity=0.050 Sum_probs=35.0
Q ss_pred eEEEEEcCCccchhhHHHHHHHHHHcCCCEEEEE--ecCCccccccccccccCCCchhh
Q 026778 167 CAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFIC--RNNGWAISTPISDQFRSIPSLPC 223 (233)
Q Consensus 167 vvv~~~GDG~~~~G~~~Ealn~A~~~~lPvvfvv--~nN~~ais~~~~~q~~~~~~~~~ 223 (233)
-.+++.+|.+..+| ++..+.-.....|.+.++ .+|++.+-.+.......+.+..+
T Consensus 52 ~fv~w~~dv~~~eg--~~la~~l~~~~~P~~~~l~~~~~~~~vv~~i~G~~~~~~ll~~ 108 (116)
T cd02991 52 RMLFWACSVAKPEG--YRVSQALRERTYPFLAMIMLKDNRMTIVGRLEGLIQPEDLINR 108 (116)
T ss_pred CEEEEEEecCChHH--HHHHHHhCCCCCCEEEEEEecCCceEEEEEEeCCCCHHHHHHH
Confidence 37999999999998 666666666678976665 35665444444444444444333
No 164
>PLN02582 1-deoxy-D-xylulose-5-phosphate synthase
Probab=45.50 E-value=53 Score=33.57 Aligned_cols=75 Identities=12% Similarity=0.128 Sum_probs=41.3
Q ss_pred hhHHHHHhhhcCCCCeEEEEEcCCccchhhHHHHHHHHHHcCCCEEEEEecCCccc-cccccccccCCCchhhhcccccc
Q 026778 152 AVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAI-STPISDQFRSIPSLPCLSNILTI 230 (233)
Q Consensus 152 A~G~A~a~k~~~~~~vvv~~~GDG~~~~G~~~Ealn~A~~~~lPvvfvv~nN~~ai-s~~~~~q~~~~~~~~~~~~~~~~ 230 (233)
++|+|-++.+.|. +.+++++. ...+=.+.+-.+.++..++||+|++...++.. ..+++.+. .-..=+.++|++
T Consensus 410 ~vg~AaGLA~~G~-kPvv~~fs--~Fl~RA~DQI~~dval~~lpVv~v~~~aG~vg~dG~TH~~~---~Dia~lr~iPnl 483 (677)
T PLN02582 410 AVTFAAGLACEGL-KPFCAIYS--SFLQRGYDQVVHDVDLQKLPVRFAMDRAGLVGADGPTHCGA---FDVTYMACLPNM 483 (677)
T ss_pred HHHHHHHHHHCCC-eEEEEecH--HHHHHHHHHHHHHHHhcCCCEEEEEECCCcccCCCCccccc---HHHHHHhcCCCC
Confidence 3333333333442 44555554 35553444466888899999999999776633 23333321 113345567766
Q ss_pred cc
Q 026778 231 LL 232 (233)
Q Consensus 231 ~~ 232 (233)
.|
T Consensus 484 ~V 485 (677)
T PLN02582 484 VV 485 (677)
T ss_pred EE
Confidence 54
No 165
>PRK05444 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=44.81 E-value=51 Score=32.70 Aligned_cols=72 Identities=18% Similarity=0.211 Sum_probs=40.9
Q ss_pred hhhhHHHHHhhhcCCCCeEEEEEcCCccchhhHHH-HHHHHHHcCCCEEEEEecCCcccc-ccccccccCCCchhhhccc
Q 026778 150 PHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHA-ALNFSAVTEAPVIFICRNNGWAIS-TPISDQFRSIPSLPCLSNI 227 (233)
Q Consensus 150 ~~A~G~A~a~k~~~~~~vvv~~~GDG~~~~G~~~E-aln~A~~~~lPvvfvv~nN~~ais-~~~~~q~~~~~~~~~~~~~ 227 (233)
+.|.|+|+ .| -..++..+. ...+ ..+| -.+.++..++||++++...++... .|++.+ .++ .+=+.++
T Consensus 335 g~A~GlA~----~G-~~p~~~~f~--~F~~-ra~dQi~~~~a~~~~pv~~v~~~~G~~g~dG~tH~~--~ed-ia~lr~i 403 (580)
T PRK05444 335 TFAAGLAT----EG-LKPVVAIYS--TFLQ-RAYDQVIHDVALQNLPVTFAIDRAGLVGADGPTHQG--AFD-LSYLRCI 403 (580)
T ss_pred HHHHHHHH----CC-CeeEEEeeH--HHHH-HHHHHHHHHhhhcCCCEEEEEeCCCcCCCCCccccc--cHH-HHHHhcC
Confidence 34566666 33 233444443 4555 4445 556688999999999987765322 333332 222 2457777
Q ss_pred ccccc
Q 026778 228 LTILL 232 (233)
Q Consensus 228 ~~~~~ 232 (233)
|++.|
T Consensus 404 P~l~V 408 (580)
T PRK05444 404 PNMVI 408 (580)
T ss_pred CCCEE
Confidence 77654
No 166
>PRK12754 transketolase; Reviewed
Probab=42.44 E-value=50 Score=33.67 Aligned_cols=76 Identities=11% Similarity=-0.042 Sum_probs=46.9
Q ss_pred chhhhHHHHHhhhcCCCCeEEEEEcCCccchhhHHHHHHHHHHcCCCEEEEEecCCccccccccccccCCCchhhhcccc
Q 026778 149 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSIPSLPCLSNIL 228 (233)
Q Consensus 149 ~~~A~G~A~a~k~~~~~~vvv~~~GDG~~~~G~~~Ealn~A~~~~lPvvfvv~nN~~ais~~~~~q~~~~~~~~~~~~~~ 228 (233)
...|.|+|+.. .-...++.|. ...+ ...+++.+++..++||++|....+++...--....+.++++. +.++|
T Consensus 415 v~iaaGlA~~~----G~~Pf~~tf~--~F~~-r~~~qir~~a~~~l~V~~v~th~gi~~G~DG~THq~iEdla~-lR~iP 486 (663)
T PRK12754 415 TAIANGIALHG----GFLPYTSTFL--MFVE-YARNAVRMAALMKQRQVMVYTHDSIGLGEDGPTHQPVEQVAS-LRVTP 486 (663)
T ss_pred HHHHhhHHhcC----CCeEEEEeeH--HHHH-HHHHHHHHHHHcCCCeEEEEECCccccCCCCCCcccHHHHHH-HhcCC
Confidence 45566666621 1122333332 3444 889999999999999999998888766543333445555543 55666
Q ss_pred cccc
Q 026778 229 TILL 232 (233)
Q Consensus 229 ~~~~ 232 (233)
.+.|
T Consensus 487 n~~V 490 (663)
T PRK12754 487 NMST 490 (663)
T ss_pred CcEE
Confidence 6543
No 167
>PRK08452 flagellar protein FlaG; Provisional
Probab=41.91 E-value=25 Score=28.26 Aligned_cols=40 Identities=18% Similarity=0.262 Sum_probs=28.3
Q ss_pred CccccCCCCCCCCeeEEeCCC-CCCCCCCCCCCCCHHHHHHHHHHHH
Q 026778 1 MRFISESSEERIPCYRVLDDD-GQPFPDSSFVKVSEGVAIKMYNDMV 46 (233)
Q Consensus 1 ~~~~~~~~~~~~~~~~vl~~~-g~~~~~~~~~~~s~e~l~~lyr~M~ 46 (233)
|+| ..++..+-..++|+|.+ |+++- .++.|+++++++.|.
T Consensus 73 L~F-~~de~~~~~vVkVvD~~T~eVIR-----qIP~Ee~L~l~~~m~ 113 (124)
T PRK08452 73 IRF-GYNDKIKGLVVSVKEANGGKVIR-----EIPSKEAIELMEYMR 113 (124)
T ss_pred eEE-EEcCCCCcEEEEEEECCCCceee-----eCCCHHHHHHHHHHH
Confidence 345 33444556789999988 45543 478899999998873
No 168
>COG2873 MET17 O-acetylhomoserine sulfhydrylase [Amino acid transport and metabolism]
Probab=41.83 E-value=37 Score=32.58 Aligned_cols=45 Identities=20% Similarity=0.243 Sum_probs=37.8
Q ss_pred HHhHHHHHHHHHHhcCcccccccCcchHHHHHHHHhccCCCCeEecC
Q 026778 47 TLQTMDTIFYEAQRQGRISFYLTTSGEEAINIASAAAIKNDDFVVPQ 93 (233)
Q Consensus 47 ~~R~~d~~~~~l~r~G~i~~~~~~~GqEa~~vg~~~aL~~~D~~~~~ 93 (233)
....||+|+..| +|-++....+.||-|+..++.-.++++|-|..+
T Consensus 63 T~~vlE~RiAaL--EGG~aa~a~aSG~AA~~~ai~~la~aGD~iVss 107 (426)
T COG2873 63 TTDVLEERIAAL--EGGVAALAVASGQAAITYAILNLAGAGDNIVSS 107 (426)
T ss_pred hHHHHHHHHHHh--hcchhhhhhccchHHHHHHHHHhccCCCeeEee
Confidence 456899999887 565677778899999999888889999999876
No 169
>cd05014 SIS_Kpsf KpsF-like protein. KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose 5-phosphate to arabinose 5-phosphate. This is the second step in the CMP-Kdo biosynthesis pathway.
Probab=41.22 E-value=1.1e+02 Score=23.21 Aligned_cols=41 Identities=20% Similarity=0.209 Sum_probs=31.5
Q ss_pred cCCCCeEEEEEcCCccchhhHHHHHHHHHHcCCCEEEEEecCC
Q 026778 162 DRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNG 204 (233)
Q Consensus 162 ~~~~~vvv~~~GDG~~~~G~~~Ealn~A~~~~lPvvfvv~nN~ 204 (233)
.+++.+++++---|.+. +.-+++..|...+.|+|.++.|..
T Consensus 45 ~~~~d~vi~iS~sG~t~--~~~~~~~~a~~~g~~vi~iT~~~~ 85 (128)
T cd05014 45 VTPGDVVIAISNSGETD--ELLNLLPHLKRRGAPIIAITGNPN 85 (128)
T ss_pred CCCCCEEEEEeCCCCCH--HHHHHHHHHHHCCCeEEEEeCCCC
Confidence 35667777776666444 458899999999999999998764
No 170
>cd01452 VWA_26S_proteasome_subunit 26S proteasome plays a major role in eukaryotic protein breakdown, especially for ubiquitin-tagged proteins. It is an ATP-dependent protease responsible for the bulk of non-lysosomal proteolysis in eukaryotes, often using covalent modification of proteins by ubiquitylation. It consists of a 20S proteolytic core particle (CP) and a 19S regulatory particle (RP). The CP is an ATP independent peptidase consisting of hydrolyzing activities. One or both ends of CP carry the RP that confers both ubiquitin and ATP dependence to the 26S proteosome. The RP's proposed functions include recognition of substrates and translocation of these to CP for proteolysis. The RP can dissociate into a stable lid and base subcomplexes. The base is composed of three non-ATPase subunits (Rpn 1, 2 and 10). A single residue in the vWA domain of Rpn10 has been implicated to be responsible for stabilizing the lid-base association.
Probab=40.87 E-value=1e+02 Score=26.27 Aligned_cols=34 Identities=18% Similarity=0.137 Sum_probs=25.5
Q ss_pred eEEEEEcCC-ccchhhHHHHHHHHHHcCCCEEEEE
Q 026778 167 CAVTYFGDG-GTSEGDFHAALNFSAVTEAPVIFIC 200 (233)
Q Consensus 167 vvv~~~GDG-~~~~G~~~Ealn~A~~~~lPvvfvv 200 (233)
.+++|+|++ +..+|+++++...++..++.+-+|.
T Consensus 109 rivi~v~S~~~~d~~~i~~~~~~lkk~~I~v~vI~ 143 (187)
T cd01452 109 RIVAFVGSPIEEDEKDLVKLAKRLKKNNVSVDIIN 143 (187)
T ss_pred eEEEEEecCCcCCHHHHHHHHHHHHHcCCeEEEEE
Confidence 445555555 8888999999999988888765543
No 171
>cd05008 SIS_GlmS_GlmD_1 SIS (Sugar ISomerase) domain repeat 1 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal glutaminase domain and two C-terminal SIS domains and catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source. The glutaminase domain hydrolyzes glutamine to glutamate and ammonia. Ammonia is transferred through a channel to the isomerase domain for glucosamine 6-phosphate synthesis. The end product of the pathway is N-acetylglucosamine, which plays multiple roles in eukaryotic cells including being a building block of bacterial and fungal cell walls. In the absence of glutamine, GlmS catalyzes the isomerization of fructose 6-phosphate into glucose 6- phosphate (PGI-like activity). Glucosamine-6-phosphate deaminase (GlmD) cont
Probab=39.86 E-value=83 Score=23.74 Aligned_cols=41 Identities=22% Similarity=0.216 Sum_probs=33.5
Q ss_pred cCCCCeEEEEEcCCccchhhHHHHHHHHHHcCCCEEEEEecCC
Q 026778 162 DRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNG 204 (233)
Q Consensus 162 ~~~~~vvv~~~GDG~~~~G~~~Ealn~A~~~~lPvvfvv~nN~ 204 (233)
.+++.+++++--.|.+.+ .-|++..|...+.|+|.+..|..
T Consensus 44 ~~~~d~~I~iS~sG~t~e--~~~~~~~a~~~g~~vi~iT~~~~ 84 (126)
T cd05008 44 LDEDTLVIAISQSGETAD--TLAALRLAKEKGAKTVAITNVVG 84 (126)
T ss_pred CCCCcEEEEEeCCcCCHH--HHHHHHHHHHcCCeEEEEECCCC
Confidence 356778888887887776 68999999999999999998743
No 172
>PF02779 Transket_pyr: Transketolase, pyrimidine binding domain; InterPro: IPR005475 Transketolase 2.2.1.1 from EC (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources [, ] show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Pichia angusta (Yeast) (Hansenula polymorpha), there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) 2.2.1.3 from EC (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates. 1-deoxyxylulose-5-phosphate synthase (DXP synthase) [] is an enzyme so far found in bacteria (gene dxs) and plants (gene CLA1) which catalyzes the thiamine pyrophosphoate-dependent acyloin condensation reaction between carbon atoms 2 and 3 of pyruvate and glyceraldehyde 3-phosphate to yield 1-deoxy-D- xylulose-5-phosphate (dxp), a precursor in the biosynthetic pathway to isoprenoids, thiamine (vitamin B1), and pyridoxol (vitamin B6). DXP synthase is evolutionary related to TK. The N-terminal section, contains a histidine residue which appears to function in proton transfer during catalysis []. In the central section there are conserved acidic residues that are part of the active cleft and may participate in substrate-binding []. This family includes transketolase enzymes 2.2.1.1 from EC and also partially matches to 2-oxoisovalerate dehydrogenase beta subunit P37941 from SWISSPROT 1.2.4.4 from EC. Both these enzymes utilise thiamine pyrophosphate as a cofactor, suggesting there may be common aspects in their mechanism of catalysis.; PDB: 2BFF_B 2BEV_B 1OLS_B 1V16_B 2BFD_B 1V1M_B 2BFC_B 1X80_B 1X7W_B 1OLX_B ....
Probab=39.75 E-value=29 Score=28.72 Aligned_cols=78 Identities=19% Similarity=0.083 Sum_probs=42.7
Q ss_pred CchhhhHHHHHhhhcCCCCeEEEEEcCCccc-hhhHHHHHH-HHHHcCCCEEEEEecCC--ccccccccccccCCCchhh
Q 026778 148 QLPHAVGAAYALKMDRKDACAVTYFGDGGTS-EGDFHAALN-FSAVTEAPVIFICRNNG--WAISTPISDQFRSIPSLPC 223 (233)
Q Consensus 148 ~~~~A~G~A~a~k~~~~~~vvv~~~GDG~~~-~G~~~Ealn-~A~~~~lPvvfvv~nN~--~ais~~~~~q~~~~~~~~~ 223 (233)
.++.|+|+|++.+ ...+++..+++=... +-..++++. ..+..++|+. |+..-+ ++...+++ .......-
T Consensus 60 ~vg~a~GlA~~G~---~~~~~~~~f~~F~~~~q~r~~~~~~~~~~~~~~~v~-v~~~~g~~~~~~G~tH---~s~~d~~~ 132 (178)
T PF02779_consen 60 MVGMAAGLALAGG---LRPPVESTFADFLTPAQIRAFDQIRNDMAYGQLPVP-VGTRAGLGYGGDGGTH---HSIEDEAI 132 (178)
T ss_dssp HHHHHHHHHHHSS---SEEEEEEEEGGGGGGGHHHHHHHHHHHHHHHTS-EE-EEEEESGGGSTTGTTT---SSSSHHHH
T ss_pred ccceeeeeeeccc---ccceeEeeccccccccchhhhhhhhhhhhcccceec-ceeecCcccccccccc---cccccccc
Confidence 3455666666652 123455555542220 244566666 7888999998 554444 44444433 23345666
Q ss_pred hcccccccc
Q 026778 224 LSNILTILL 232 (233)
Q Consensus 224 ~~~~~~~~~ 232 (233)
+.++|++.|
T Consensus 133 ~~~iPg~~v 141 (178)
T PF02779_consen 133 LRSIPGMKV 141 (178)
T ss_dssp HHTSTTEEE
T ss_pred ccccccccc
Confidence 777877654
No 173
>PLN02234 1-deoxy-D-xylulose-5-phosphate synthase
Probab=38.01 E-value=77 Score=32.25 Aligned_cols=75 Identities=13% Similarity=0.137 Sum_probs=39.3
Q ss_pred hhHHHHHhhhcCCCCeEEEEEcCCccchhhHHHHHHHHHHcCCCEEEEEecCCccc-cccccccccCCCchhhhcccccc
Q 026778 152 AVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAI-STPISDQFRSIPSLPCLSNILTI 230 (233)
Q Consensus 152 A~G~A~a~k~~~~~~vvv~~~GDG~~~~G~~~Ealn~A~~~~lPvvfvv~nN~~ai-s~~~~~q~~~~~~~~~~~~~~~~ 230 (233)
++|+|.++.+.|. +.+++++. ...+-.+.+=.+.++..++||+|++...++.- ..+++.+. --..-+.++|++
T Consensus 411 ~Vg~AaGLA~~G~-rPvv~~fs--~Fl~RA~DQI~~dva~~~lpV~~v~~~aG~~g~dG~TH~~~---~Dia~lr~iPnl 484 (641)
T PLN02234 411 AVTFAAGLACEGL-KPFCTIYS--SFMQRAYDQVVHDVDLQKLPVRFAIDRAGLMGADGPTHCGA---FDVTFMACLPNM 484 (641)
T ss_pred HHHHHHHHHHCCC-eEEEEehH--HHHHHHHHHHHHHHhhcCCCEEEEEeCCccCCCCCcccccc---HHHHHHhcCCCC
Confidence 3333433333343 34444443 34443344444677899999999998877532 23433332 223344566665
Q ss_pred cc
Q 026778 231 LL 232 (233)
Q Consensus 231 ~~ 232 (233)
.|
T Consensus 485 ~V 486 (641)
T PLN02234 485 IV 486 (641)
T ss_pred EE
Confidence 43
No 174
>PRK08114 cystathionine beta-lyase; Provisional
Probab=37.86 E-value=54 Score=31.12 Aligned_cols=44 Identities=18% Similarity=0.173 Sum_probs=32.9
Q ss_pred HhHHHHHHHHHHhcCcccccccCcchHHHHHHHHhccCCCCeEecC
Q 026778 48 LQTMDTIFYEAQRQGRISFYLTTSGEEAINIASAAAIKNDDFVVPQ 93 (233)
Q Consensus 48 ~R~~d~~~~~l~r~G~i~~~~~~~GqEa~~vg~~~aL~~~D~~~~~ 93 (233)
.+.||+++..| ..|.-.+..++ |..|+...+...++++|.|+..
T Consensus 64 ~~~le~~la~L-Eg~~~a~~~~S-GmaAi~~~~~~ll~~GD~Vv~~ 107 (395)
T PRK08114 64 HFSLQEAMCEL-EGGAGCALYPC-GAAAVANAILAFVEQGDHVLMT 107 (395)
T ss_pred HHHHHHHHHHH-hCCCeEEEEhH-HHHHHHHHHHHHcCCCCEEEEe
Confidence 46899998887 34544455555 9999987777778999988775
No 175
>TIGR02176 pyruv_ox_red pyruvate:ferredoxin (flavodoxin) oxidoreductase, homodimeric. This model represents a single chain form of pyruvate:ferredoxin (or flavodoxin) oxidoreductase. This enzyme may transfer electrons to nitrogenase in nitrogen-fixing species. Portions of this protein are homologous to gamma subunit of the four subunit pyruvate:ferredoxin (flavodoxin) oxidoreductase.
Probab=37.30 E-value=43 Score=36.36 Aligned_cols=39 Identities=15% Similarity=0.177 Sum_probs=30.4
Q ss_pred eEEEEEcCC-ccchhhHHHHHHHHHHcCCCEEEEEecCC-ccc
Q 026778 167 CAVTYFGDG-GTSEGDFHAALNFSAVTEAPVIFICRNNG-WAI 207 (233)
Q Consensus 167 vvv~~~GDG-~~~~G~~~Ealn~A~~~~lPvvfvv~nN~-~ai 207 (233)
-++++.||| +..-| ..++.-|...+.++.++|-||. |+.
T Consensus 953 sv~~~~GDG~~~diG--~~~l~~~~~r~~~v~~i~~dne~Y~n 993 (1165)
T TIGR02176 953 SVWIIGGDGWAYDIG--YGGLDHVLASGKDVNVLVMDTEVYSN 993 (1165)
T ss_pred eeEEEecchhhhccC--ccchHHHHHcCCCeEEEEECCccccc
Confidence 589999999 45777 3457788889999988887775 655
No 176
>TIGR00513 accA acetyl-CoA carboxylase, carboxyl transferase, alpha subunit. The enzyme acetyl-CoA carboxylase contains a biotin carboxyl carrier protein or domain, a biotin carboxylase, and a carboxyl transferase. This model represents the alpha chain of the carboxyl transferase for cases in which the architecture of the protein is as in E. coli, in which the carboxyltransferase portion consists of two non-identical subnits, alpha and beta.
Probab=36.62 E-value=46 Score=30.87 Aligned_cols=28 Identities=11% Similarity=0.099 Sum_probs=22.1
Q ss_pred HHHHHHHHcCCCEEEEEecCCccccccc
Q 026778 184 AALNFSAVTEAPVIFICRNNGWAISTPI 211 (233)
Q Consensus 184 Ealn~A~~~~lPvvfvv~nN~~ais~~~ 211 (233)
..+.+|..+++|+|++|+--++-++...
T Consensus 142 R~m~lA~~f~iPvVtlvDTpGa~~g~~a 169 (316)
T TIGR00513 142 RLMKMAERFKMPIITFIDTPGAYPGIGA 169 (316)
T ss_pred HHHHHHHHcCCCEEEEEECCCCCCCHHH
Confidence 3466788899999999999998766543
No 177
>cd00198 vWFA Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if not all A domains.
Probab=36.45 E-value=1.3e+02 Score=22.33 Aligned_cols=38 Identities=16% Similarity=0.087 Sum_probs=28.8
Q ss_pred CCCeEEEEEcCCccchh--hHHHHHHHHHHcCCCEEEEEe
Q 026778 164 KDACAVTYFGDGGTSEG--DFHAALNFSAVTEAPVIFICR 201 (233)
Q Consensus 164 ~~~vvv~~~GDG~~~~G--~~~Ealn~A~~~~lPvvfvv~ 201 (233)
.....+++++||....+ ...+.+..+...+..+.+|--
T Consensus 100 ~~~~~lvvitDg~~~~~~~~~~~~~~~~~~~~v~v~~v~~ 139 (161)
T cd00198 100 NARRVIILLTDGEPNDGPELLAEAARELRKLGITVYTIGI 139 (161)
T ss_pred CCceEEEEEeCCCCCCCcchhHHHHHHHHHcCCEEEEEEc
Confidence 35678999999998877 577888888877777655543
No 178
>KOG3107 consensus Predicted haloacid dehalogenase-like hydrolase (eyes absent) [General function prediction only]
Probab=36.23 E-value=53 Score=31.61 Aligned_cols=27 Identities=19% Similarity=0.204 Sum_probs=23.6
Q ss_pred CeEEEEEcCCccchhhHHHHHHHHHHcCCCEEEE
Q 026778 166 ACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFI 199 (233)
Q Consensus 166 ~vvv~~~GDG~~~~G~~~Ealn~A~~~~lPvvfv 199 (233)
.+++|+|||| ||--+-|..++.|+.=|
T Consensus 424 K~~yvvIgdG-------~eee~aAK~ln~PfwrI 450 (468)
T KOG3107|consen 424 KVVYVVIGDG-------VEEEQAAKALNMPFWRI 450 (468)
T ss_pred ceEEEEecCc-------HHHHHHHHhhCCceEee
Confidence 7999999999 78888899999998643
No 179
>cd05710 SIS_1 A subgroup of the SIS domain. SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars.
Probab=35.86 E-value=1e+02 Score=23.67 Aligned_cols=41 Identities=22% Similarity=0.198 Sum_probs=32.6
Q ss_pred cCCCCeEEEEEcCCccchhhHHHHHHHHHHcCCCEEEEEecCC
Q 026778 162 DRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNG 204 (233)
Q Consensus 162 ~~~~~vvv~~~GDG~~~~G~~~Ealn~A~~~~lPvvfvv~nN~ 204 (233)
.+++.+++++---|.+.+- -+++..|...+.|+|.++.+.+
T Consensus 45 ~~~~dl~I~iS~SG~t~~~--~~~~~~a~~~g~~vi~iT~~~~ 85 (120)
T cd05710 45 LTEKSVVILASHSGNTKET--VAAAKFAKEKGATVIGLTDDED 85 (120)
T ss_pred CCCCcEEEEEeCCCCChHH--HHHHHHHHHcCCeEEEEECCCC
Confidence 3556788888877866654 8999999999999999987654
No 180
>cd05009 SIS_GlmS_GlmD_2 SIS (Sugar ISomerase) domain repeat 2 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD). The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal glutaminase domain and two C-terminal SIS domains and catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source. The glutaminase domain hydrolyzes glutamine to glutamate and ammonia. Ammonia is transferred through a channel to the isomerase domain for glucosamine 6-phosphate synthesis. The end product of the pathway is N-acetylglucosamine, which plays multiple roles in eukaryotic cells including being a building block of bacterial and fungal cell walls. In the absence of glutamine, GlmS catalyzes the isomerization of fructose 6-phosphate into glucose 6- phosphate (PGI-like activity). Glucosamine-6-phosphate deaminase (GlmD) cont
Probab=35.47 E-value=1.6e+02 Score=22.78 Aligned_cols=39 Identities=13% Similarity=0.135 Sum_probs=28.7
Q ss_pred CCCeEEEEEcCCccchhhHHHHHHHHHHcCCCEEEEEecC
Q 026778 164 KDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNN 203 (233)
Q Consensus 164 ~~~vvv~~~GDG~~~~G~~~Ealn~A~~~~lPvvfvv~nN 203 (233)
++.+++.+-++|++.+ ...+++..+...+.|++.|..+.
T Consensus 61 ~~~~vi~is~~g~t~~-~~~~~~~~~~~~~~~vi~it~~~ 99 (153)
T cd05009 61 EGTPVIFLAPEDRLEE-KLESLIKEVKARGAKVIVITDDG 99 (153)
T ss_pred CCCcEEEEecCChhHH-HHHHHHHHHHHcCCEEEEEecCC
Confidence 4567777777775443 25678888888999999988765
No 181
>PLN02225 1-deoxy-D-xylulose-5-phosphate synthase
Probab=35.22 E-value=78 Score=32.58 Aligned_cols=75 Identities=11% Similarity=0.076 Sum_probs=42.7
Q ss_pred hhHHHHHhhhcCCCCeEEEEEcCCccchhhHHHHHHHHHHcCCCEEEEEecCCccc-cccccccccCCCchhhhcccccc
Q 026778 152 AVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAI-STPISDQFRSIPSLPCLSNILTI 230 (233)
Q Consensus 152 A~G~A~a~k~~~~~~vvv~~~GDG~~~~G~~~Ealn~A~~~~lPvvfvv~nN~~ai-s~~~~~q~~~~~~~~~~~~~~~~ 230 (233)
++|+|-++.+.|. +.+++.+. ..-+=.+.+-.+-++..++||+|++..-++.- ..|++. ..+++ +=+..+|.+
T Consensus 435 aVt~AAGLA~~G~-kPvv~iys--tFlqRAyDQI~~Dval~~lpV~~vid~aGlvg~DG~TH~--g~~Di-a~lr~IPnm 508 (701)
T PLN02225 435 AVTFSAGLSSGGL-KPFCIIPS--AFLQRAYDQVVHDVDRQRKAVRFVITSAGLVGSDGPVQC--GAFDI-AFMSSLPNM 508 (701)
T ss_pred HHHHHHHHHHCCC-EEEEEeeh--hHHHHHHHHHHHHHHhhcCCceEEEECCccCCCCCcccc--ccHHH-HHHhcCCCC
Confidence 3344433334444 45556663 56664455556668999999999998766532 122222 23333 556777776
Q ss_pred cc
Q 026778 231 LL 232 (233)
Q Consensus 231 ~~ 232 (233)
.|
T Consensus 509 ~V 510 (701)
T PLN02225 509 IA 510 (701)
T ss_pred EE
Confidence 54
No 182
>cd05017 SIS_PGI_PMI_1 The members of this protein family contain the SIS (Sugar ISomerase) domain and have both the phosphoglucose isomerase (PGI) and the phosphomannose isomerase (PMI) functions. These functions catalyze the reversible reactions of glucose 6-phosphate to fructose 6-phosphate, and mannose 6-phosphate to fructose 6-phosphate, respectively at an equal rate. This protein contains two SIS domains. This alignment is based on the first SIS domain.
Probab=34.78 E-value=79 Score=24.11 Aligned_cols=40 Identities=15% Similarity=0.144 Sum_probs=31.5
Q ss_pred cCCCCeEEEEEcCCccchhhHHHHHHHHHHcCCCEEEEEecC
Q 026778 162 DRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNN 203 (233)
Q Consensus 162 ~~~~~vvv~~~GDG~~~~G~~~Ealn~A~~~~lPvvfvv~nN 203 (233)
.+++.+++++--.|.+.+- -|++..|...+.|+|.+..|.
T Consensus 41 ~~~~dl~I~iS~SG~t~e~--i~~~~~a~~~g~~iI~IT~~~ 80 (119)
T cd05017 41 VDRKTLVIAVSYSGNTEET--LSAVEQAKERGAKIVAITSGG 80 (119)
T ss_pred CCCCCEEEEEECCCCCHHH--HHHHHHHHHCCCEEEEEeCCc
Confidence 4566788888888876654 788999999999999888654
No 183
>cd07037 TPP_PYR_MenD Pyrimidine (PYR) binding domain of 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1-carboxylate synthase (MenD) and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexadiene-1-carboxylate (SEPHCHC) synthase (MenD) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dim
Probab=34.16 E-value=68 Score=26.49 Aligned_cols=41 Identities=10% Similarity=0.140 Sum_probs=29.7
Q ss_pred hcCCCCeEEEEEcCCccchhhHHHHHHHHHHcCCCEEEEEecCC
Q 026778 161 MDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNG 204 (233)
Q Consensus 161 ~~~~~~vvv~~~GDG~~~~G~~~Ealn~A~~~~lPvvfvv~nN~ 204 (233)
..++..++++..|=|.+| .--++-.|..-+.|+|+|+-+-.
T Consensus 57 ~sg~~gv~~~t~GpG~~n---~~~gl~~A~~~~~Pvl~i~g~~~ 97 (162)
T cd07037 57 ASGRPVAVVCTSGTAVAN---LLPAVVEAYYSGVPLLVLTADRP 97 (162)
T ss_pred hhCCCEEEEECCchHHHH---HhHHHHHHHhcCCCEEEEECCCC
Confidence 345666777777777666 34667788888999999986543
No 184
>PRK12319 acetyl-CoA carboxylase subunit alpha; Provisional
Probab=34.11 E-value=29 Score=31.16 Aligned_cols=29 Identities=10% Similarity=0.021 Sum_probs=23.2
Q ss_pred HHHHHHHHHcCCCEEEEEecCCccccccc
Q 026778 183 HAALNFSAVTEAPVIFICRNNGWAISTPI 211 (233)
Q Consensus 183 ~Ealn~A~~~~lPvvfvv~nN~~ais~~~ 211 (233)
-..+.+|..+++|+|++++--+.-.+...
T Consensus 88 ~R~~~lA~~~~lPvV~lvDtpGa~~g~~a 116 (256)
T PRK12319 88 LRLMKQAEKFGRPVVTFINTAGAYPGVGA 116 (256)
T ss_pred HHHHHHHHHcCCCEEEEEECCCcCCCHhH
Confidence 45567888999999999999998765443
No 185
>PTZ00182 3-methyl-2-oxobutanate dehydrogenase; Provisional
Probab=33.80 E-value=98 Score=28.92 Aligned_cols=73 Identities=16% Similarity=0.144 Sum_probs=42.2
Q ss_pred chhhhHHHHHhhhcCCCCeEEEE-EcCCccchhhHHHHHHHHHH--------cCCCEEEEEecCCccccccccccccCCC
Q 026778 149 LPHAVGAAYALKMDRKDACAVTY-FGDGGTSEGDFHAALNFSAV--------TEAPVIFICRNNGWAISTPISDQFRSIP 219 (233)
Q Consensus 149 ~~~A~G~A~a~k~~~~~~vvv~~-~GDG~~~~G~~~Ealn~A~~--------~~lPvvfvv~nN~~ais~~~~~q~~~~~ 219 (233)
++.|+|+|++ |. +.++++ +.|= ..-.|.+-.|.++. +++|+|+......++...+++.|.
T Consensus 95 vg~AaGlA~~----G~-~Pvv~~~fa~F--l~ra~dQi~~d~a~~~~~~~g~~~v~vv~~~~~g~~g~~G~tHs~~---- 163 (355)
T PTZ00182 95 AGFAIGAAMN----GL-RPIAEFMFADF--IFPAFDQIVNEAAKYRYMSGGQFDCPIVIRGPNGAVGHGGAYHSQS---- 163 (355)
T ss_pred HHHHHHHHhC----CC-EEEEEechhhH--HHHHHHHHHHHHHHhhcccCCCccCCEEEEeCCCCCCCCCCcccch----
Confidence 3446666664 32 233333 4442 23334444455555 467888887666777777877663
Q ss_pred chhhhcccccccc
Q 026778 220 SLPCLSNILTILL 232 (233)
Q Consensus 220 ~~~~~~~~~~~~~ 232 (233)
+.+-+.++|++.|
T Consensus 164 ~ea~lr~iPn~~V 176 (355)
T PTZ00182 164 FEAYFAHVPGLKV 176 (355)
T ss_pred HHHHHhcCCCCEE
Confidence 2377788887754
No 186
>COG0674 PorA Pyruvate:ferredoxin oxidoreductase and related 2-oxoacid:ferredoxin oxidoreductases, alpha subunit [Energy production and conversion]
Probab=33.71 E-value=46 Score=31.24 Aligned_cols=76 Identities=16% Similarity=0.142 Sum_probs=49.2
Q ss_pred CCchhhhHHHHHhhhcCCCCeEEEEEcCCccchh--hHHHHHHHHHHcCCCEEEEEecCCccccccccccccCCCchhhh
Q 026778 147 TQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEG--DFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSIPSLPCL 224 (233)
Q Consensus 147 ~~~~~A~G~A~a~k~~~~~~vvv~~~GDG~~~~G--~~~Ealn~A~~~~lPvvfvv~nN~~ais~~~~~q~~~~~~~~~~ 224 (233)
+.++.++|.+++..+ ..-. ++++| -.+|++-+|+-..+|+|+++-+..-......-.+-..|-.+.+.
T Consensus 58 ~a~s~v~GA~~aGar-----~~Ta-----TSg~Gl~Lm~E~l~~a~~~~~P~Vi~~~~R~~ps~g~p~~~dq~D~~~~r~ 127 (365)
T COG0674 58 GAISAVIGASYAGAR-----AFTA-----TSGQGLLLMAEALGLAAGTETPLVIVVAQRPLPSTGLPIKGDQSDLMAARD 127 (365)
T ss_pred HHHHHHHHHHhhCcc-----eEee-----cCCccHHHHHHHHHHHHhccCCeEEEEeccCcCCCcccccccHHHHHHHHc
Confidence 356778888887643 2222 33444 45899999999999999988877654433322333344467777
Q ss_pred cccccccc
Q 026778 225 SNILTILL 232 (233)
Q Consensus 225 ~~~~~~~~ 232 (233)
.+||.|.+
T Consensus 128 ~g~~~~~~ 135 (365)
T COG0674 128 TGFPILVS 135 (365)
T ss_pred cCceEEee
Confidence 77777653
No 187
>PRK12571 1-deoxy-D-xylulose-5-phosphate synthase; Provisional
Probab=33.55 E-value=1.2e+02 Score=30.73 Aligned_cols=73 Identities=16% Similarity=0.131 Sum_probs=41.9
Q ss_pred chhhhHHHHHhhhcCCCCeEEEEEcCCccchhhHHHHH-HHHHHcCCCEEEEEecCCcc-ccccccccccCCCchhhhcc
Q 026778 149 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAAL-NFSAVTEAPVIFICRNNGWA-ISTPISDQFRSIPSLPCLSN 226 (233)
Q Consensus 149 ~~~A~G~A~a~k~~~~~~vvv~~~GDG~~~~G~~~Eal-n~A~~~~lPvvfvv~nN~~a-is~~~~~q~~~~~~~~~~~~ 226 (233)
++.|.|+|+ .|. ..+++.+. ...+ ...+.+ +.++..++||+|++..-++. ...|++.+. .-.+-+.+
T Consensus 374 vg~AaGlA~----~G~-~P~v~~f~--~Fl~-ra~dQI~~~~a~~~lpv~~v~~~~G~~g~dG~THq~~---~dia~lr~ 442 (641)
T PRK12571 374 VTFAAGLAA----AGL-KPFCAVYS--TFLQ-RGYDQLLHDVALQNLPVRFVLDRAGLVGADGATHAGA---FDLAFLTN 442 (641)
T ss_pred HHHHHHHHH----CCC-EEEEEehH--HHHH-HHHHHHHHHHhhcCCCeEEEEECCCcCCCCCcccccc---HHHHHHhc
Confidence 344555554 232 33444444 3555 555555 66899999999999777653 223333331 22366777
Q ss_pred cccccc
Q 026778 227 ILTILL 232 (233)
Q Consensus 227 ~~~~~~ 232 (233)
+|++.|
T Consensus 443 iPnl~V 448 (641)
T PRK12571 443 LPNMTV 448 (641)
T ss_pred CCCCEE
Confidence 787754
No 188
>PRK09212 pyruvate dehydrogenase subunit beta; Validated
Probab=33.49 E-value=1.3e+02 Score=27.71 Aligned_cols=36 Identities=19% Similarity=0.198 Sum_probs=25.5
Q ss_pred CCCEEEEEecCCccccccccccccCCCchhhhcccccccc
Q 026778 193 EAPVIFICRNNGWAISTPISDQFRSIPSLPCLSNILTILL 232 (233)
Q Consensus 193 ~lPvvfvv~nN~~ais~~~~~q~~~~~~~~~~~~~~~~~~ 232 (233)
++|+++...+-.++-..+++.|. +.+-+.++|++.|
T Consensus 110 ~v~vv~~~~~g~~~~~G~tH~~~----~ea~~r~iP~l~V 145 (327)
T PRK09212 110 KCPIVFRGPNGAAARVAAQHSQC----YAAWYSHIPGLKV 145 (327)
T ss_pred CccEEEEeCCCCCCCCCcccccC----HHHHHhcCCCCEE
Confidence 68889988776666666666554 2378888888765
No 189
>cd07039 TPP_PYR_POX Pyrimidine (PYR) binding domain of POX. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate oxidase (POX) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites. Lactobacillus plantarum POX is a homotetramer (dimer-of-homodimers), having two active sites per homodimer lying between PYR and PP domains of differ
Probab=32.77 E-value=89 Score=25.59 Aligned_cols=42 Identities=19% Similarity=0.111 Sum_probs=31.0
Q ss_pred hcCCCCeEEEEEcCCccchhhHHHHHHHHHHcCCCEEEEEecCCc
Q 026778 161 MDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGW 205 (233)
Q Consensus 161 ~~~~~~vvv~~~GDG~~~~G~~~Ealn~A~~~~lPvvfvv~nN~~ 205 (233)
..++..++++..|=|.+|. --++-.|..-++|||+|+-+...
T Consensus 60 ~tg~~~v~~~t~GpG~~n~---~~~l~~A~~~~~Pvl~I~g~~~~ 101 (164)
T cd07039 60 LTGKLGVCLGSSGPGAIHL---LNGLYDAKRDRAPVLAIAGQVPT 101 (164)
T ss_pred HhCCCEEEEECCCCcHHHH---HHHHHHHHhcCCCEEEEecCCcc
Confidence 3456677777778887763 46777888889999999966543
No 190
>PF03646 FlaG: FlaG protein; InterPro: IPR005186 Although these proteins are known to be important for flagellar their exact function is unknown.; PDB: 2HC5_A.
Probab=32.44 E-value=12 Score=28.54 Aligned_cols=32 Identities=9% Similarity=0.231 Sum_probs=22.5
Q ss_pred CCCCeeEEeCCC-CCCCCCCCCCCCCHHHHHHHHHHHH
Q 026778 10 ERIPCYRVLDDD-GQPFPDSSFVKVSEGVAIKMYNDMV 46 (233)
Q Consensus 10 ~~~~~~~vl~~~-g~~~~~~~~~~~s~e~l~~lyr~M~ 46 (233)
.+...++|+|.+ |+++ ..++.|+++++.+.|.
T Consensus 65 ~~~~vVkViD~~T~eVI-----RqIP~Ee~l~l~~~l~ 97 (107)
T PF03646_consen 65 SGRVVVKVIDKETGEVI-----RQIPPEELLDLAKRLR 97 (107)
T ss_dssp TTEEEEEEEETTT-SEE-----EEE-HHHHHHHHHHHH
T ss_pred CCcEEEEEEECCCCcEE-----EeCCcHHHHHHHHHHH
Confidence 344678999986 4554 3578999999998884
No 191
>smart00594 UAS UAS domain.
Probab=32.35 E-value=58 Score=25.15 Aligned_cols=36 Identities=22% Similarity=0.228 Sum_probs=24.0
Q ss_pred eEEEEEcCCccchhhHHHHHHHHHHcCCCEEEEEecCC
Q 026778 167 CAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNG 204 (233)
Q Consensus 167 vvv~~~GDG~~~~G~~~Ealn~A~~~~lPvvfvv~nN~ 204 (233)
-.|++.+|-.+.+| ++-.+.=...+.|.+++++-|+
T Consensus 62 ~fv~~~~dv~~~eg--~~l~~~~~~~~~P~~~~l~~~~ 97 (122)
T smart00594 62 NFIFWQVDVDTSEG--QRVSQFYKLDSFPYVAIVDPRT 97 (122)
T ss_pred CEEEEEecCCChhH--HHHHHhcCcCCCCEEEEEecCC
Confidence 36777789888887 3333333445789888887664
No 192
>PRK11658 UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase; Provisional
Probab=32.16 E-value=1.9e+02 Score=26.61 Aligned_cols=61 Identities=13% Similarity=0.114 Sum_probs=40.7
Q ss_pred CCCCCHHHHHHHHHHHH--------HHhHHHHHHHHHHhcCcccccccCcchHHHHHHHHhc-cCCCCeEec
Q 026778 30 FVKVSEGVAIKMYNDMV--------TLQTMDTIFYEAQRQGRISFYLTTSGEEAINIASAAA-IKNDDFVVP 92 (233)
Q Consensus 30 ~~~~s~e~l~~lyr~M~--------~~R~~d~~~~~l~r~G~i~~~~~~~GqEa~~vg~~~a-L~~~D~~~~ 92 (233)
.+.++++++..+.+.+. ..+.||+++.++..... ....+.|.+|..+++.+. ++++|.|+.
T Consensus 9 ~p~~~~~e~~~~~~~l~~~~~~~g~~~~~le~~la~~~g~~~--~v~~~sgt~al~lal~al~~~~Gd~Viv 78 (379)
T PRK11658 9 RPAMGDEELAAVKEVLRSGWITTGPKNQALEQAFCQLTGNQH--AIAVSSATAGMHITLMALGIGPGDEVIT 78 (379)
T ss_pred CCCCCHHHHHHHHHHHHcCCccCCHhHHHHHHHHHHHhCCCe--EEEECCHHHHHHHHHHHcCCCCCCEEEE
Confidence 45677777666655432 24788999888765432 234567899998877666 689996653
No 193
>cd01450 vWFA_subfamily_ECM Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if not all A
Probab=31.71 E-value=1.7e+02 Score=22.38 Aligned_cols=39 Identities=15% Similarity=0.129 Sum_probs=29.0
Q ss_pred CCCeEEEEEcCCccchh-hHHHHHHHHHHcCCCEEEEEec
Q 026778 164 KDACAVTYFGDGGTSEG-DFHAALNFSAVTEAPVIFICRN 202 (233)
Q Consensus 164 ~~~vvv~~~GDG~~~~G-~~~Ealn~A~~~~lPvvfvv~n 202 (233)
....+++++.||..+.+ +..+++......+++++.|.-.
T Consensus 102 ~~~~~iiliTDG~~~~~~~~~~~~~~~~~~~v~v~~i~~g 141 (161)
T cd01450 102 NVPKVIIVLTDGRSDDGGDPKEAAAKLKDEGIKVFVVGVG 141 (161)
T ss_pred CCCeEEEEECCCCCCCCcchHHHHHHHHHCCCEEEEEecc
Confidence 34568999999988776 3777777777778887766543
No 194
>cd01467 vWA_BatA_type VWA BatA type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses. In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if
Probab=31.26 E-value=2e+02 Score=22.90 Aligned_cols=36 Identities=14% Similarity=0.191 Sum_probs=25.6
Q ss_pred CeEEEEEcCCccchhh--HHHHHHHHHHcCCCEEEEEe
Q 026778 166 ACAVTYFGDGGTSEGD--FHAALNFSAVTEAPVIFICR 201 (233)
Q Consensus 166 ~vvv~~~GDG~~~~G~--~~Ealn~A~~~~lPvvfvv~ 201 (233)
+..++++.||..+.|. ..++...+...++++..|--
T Consensus 103 ~~~iiliTDG~~~~g~~~~~~~~~~~~~~gi~i~~i~i 140 (180)
T cd01467 103 ERVIVLLTDGENNAGEIDPATAAELAKNKGVRIYTIGV 140 (180)
T ss_pred CCEEEEEeCCCCCCCCCCHHHHHHHHHHCCCEEEEEEe
Confidence 4689999999988774 34666677777887654443
No 195
>PRK06702 O-acetylhomoserine aminocarboxypropyltransferase; Validated
Probab=31.14 E-value=80 Score=30.34 Aligned_cols=45 Identities=22% Similarity=0.260 Sum_probs=34.1
Q ss_pred HHhHHHHHHHHHHhcCcccccccCcchHHHHHHHHhccCCCCeEecC
Q 026778 47 TLQTMDTIFYEAQRQGRISFYLTTSGEEAINIASAAAIKNDDFVVPQ 93 (233)
Q Consensus 47 ~~R~~d~~~~~l~r~G~i~~~~~~~GqEa~~vg~~~aL~~~D~~~~~ 93 (233)
..+.||+++..+... ..-...+.|..|+..++.+.++++|.|+..
T Consensus 62 tv~~lE~~la~leg~--~~av~~~SG~aAi~~al~all~~GD~VI~~ 106 (432)
T PRK06702 62 TLAAFEQKLAELEGG--VGAVATASGQAAIMLAVLNICSSGDHLLCS 106 (432)
T ss_pred HHHHHHHHHHHHhCC--CcEEEECCHHHHHHHHHHHhcCCCCEEEEC
Confidence 568899999887532 233456789999998887779999987754
No 196
>cd05007 SIS_Etherase N-acetylmuramic acid 6-phosphate etherase. Members of this family contain the SIS (Sugar ISomerase) domain. The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. The bacterial cell wall sugar N-acetylmuramic acid carries a unique D-lactyl ether substituent at the C3 position. The etherase catalyzes the cleavage of the lactyl ether bond of N-acetylmuramic acid 6-phosphate.
Probab=30.97 E-value=1.1e+02 Score=27.16 Aligned_cols=40 Identities=23% Similarity=0.228 Sum_probs=34.3
Q ss_pred CCCCeEEEEEcCCccchhhHHHHHHHHHHcCCCEEEEEecCC
Q 026778 163 RKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNG 204 (233)
Q Consensus 163 ~~~~vvv~~~GDG~~~~G~~~Ealn~A~~~~lPvvfvv~nN~ 204 (233)
.++.+++.+-..|.+.+ +.+++..|...+.|+|.++.|..
T Consensus 117 ~~~DvvI~IS~SG~T~~--vi~al~~Ak~~Ga~~I~It~~~~ 156 (257)
T cd05007 117 TERDVVIGIAASGRTPY--VLGALRYARARGALTIGIACNPG 156 (257)
T ss_pred CCCCEEEEEeCCCCCHH--HHHHHHHHHHCCCeEEEEECCCC
Confidence 56778888888888776 79999999999999999997764
No 197
>smart00861 Transket_pyr Transketolase, pyrimidine binding domain. Transketolase (TK) catalyzes the reversible transfer of a two-carbon ketol unit from xylulose 5-phosphate to an aldose receptor, such as ribose 5-phosphate, to form sedoheptulose 7-phosphate and glyceraldehyde 3- phosphate. This enzyme, together with transaldolase, provides a link between the glycolytic and pentose-phosphate pathways. TK requires thiamine pyrophosphate as a cofactor. In most sources where TK has been purified, it is a homodimer of approximately 70 Kd subunits. TK sequences from a variety of eukaryotic and prokaryotic sources show that the enzyme has been evolutionarily conserved. In the peroxisomes of methylotrophic yeast Hansenula polymorpha, there is a highly related enzyme, dihydroxy-acetone synthase (DHAS) (also known as formaldehyde transketolase), which exhibits a very unusual specificity by including formaldehyde amongst its substrates.
Probab=30.82 E-value=1e+02 Score=24.88 Aligned_cols=70 Identities=17% Similarity=0.097 Sum_probs=38.7
Q ss_pred hhhHHHHHhhhcCCCCeEEEEEcCCccchhhHHHHHHHHHHcC-CCEEEEEec-CCccccccccccccCCCchhhhcccc
Q 026778 151 HAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTE-APVIFICRN-NGWAISTPISDQFRSIPSLPCLSNIL 228 (233)
Q Consensus 151 ~A~G~A~a~k~~~~~~vvv~~~GDG~~~~G~~~Ealn~A~~~~-lPvvfvv~n-N~~ais~~~~~q~~~~~~~~~~~~~~ 228 (233)
.|.|+|+. +. .++++++..-. . ...+.+.++..++ .|+|+...- ..++...+++.- ......+.++|
T Consensus 64 ~a~GlA~~----G~-~pi~~~~~~f~--~-~a~~~~~~~~~~~~~~~v~~~~~g~~~g~~G~tH~~---~~~~~~~~~iP 132 (168)
T smart00861 64 FAAGLALA----GL-RPVVAIFFTFF--D-RAKDQIRSDGAMGRVPVVVRHDSGGGVGEDGPTHHS---QEDEALLRAIP 132 (168)
T ss_pred HHHHHHHc----CC-CcEEEeeHHHH--H-HHHHHHHHhCcccCCCEEEEecCccccCCCCccccc---hhHHHHHhcCC
Confidence 34555554 43 45555554322 2 3577888888887 677766654 555554443322 24445566777
Q ss_pred ccc
Q 026778 229 TIL 231 (233)
Q Consensus 229 ~~~ 231 (233)
++.
T Consensus 133 ~~~ 135 (168)
T smart00861 133 GLK 135 (168)
T ss_pred CcE
Confidence 654
No 198
>PF05014 Nuc_deoxyrib_tr: Nucleoside 2-deoxyribosyltransferase; InterPro: IPR007710 Nucleoside 2-deoxyribosyltransferase (2.4.2.6 from EC) catalyses the cleavage of the glycosidic bonds of 2-deoxyribonucleosides. Nucleoside 2-deoxyribosyltransferases can be divided into two groups based on their substrate specificity: class I enzymes are specific for the transfer of deoxyribose between two purines, while class II enzymes will transfer the deoxyribose between either purines or pyrimidines. The structure of the class I [] and class II [] enzymes are very similar. In class I enzymes, the purine base shields the active site from solvent, which the smaller pyrimidine base cannot do, while in class II enzymes the active site is shielded by a loop (residues 48-62). Both classes of enzymes are found in various Lactobacillus species and participate in nucleoside recycling in these microorganisms. This entry represents both classes of enzymes.; GO: 0050144 nucleoside deoxyribosyltransferase activity, 0070694 deoxyribonucleoside 5'-monophosphate N-glycosidase activity, 0009159 deoxyribonucleoside monophosphate catabolic process; PDB: 1S2L_A 1S2D_C 1S2I_A 1S3F_B 1S2G_C 2A0K_A 2F67_A 2F64_B 2F62_A 2F2T_A ....
Probab=30.75 E-value=1.3e+02 Score=22.72 Aligned_cols=41 Identities=10% Similarity=0.156 Sum_probs=29.2
Q ss_pred CCCeEEEEEcCCccchhhHHHHHHHHHHcCCCEEEEEecCCc
Q 026778 164 KDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGW 205 (233)
Q Consensus 164 ~~~vvv~~~GDG~~~~G~~~Ealn~A~~~~lPvvfvv~nN~~ 205 (233)
+-.++++.+.+--.+.|..+|. -+|...+.||+.++++.+.
T Consensus 61 ~~D~via~l~~~~~d~Gt~~El-G~A~algkpv~~~~~d~~~ 101 (113)
T PF05014_consen 61 ECDIVIANLDGFRPDSGTAFEL-GYAYALGKPVILLTEDDRP 101 (113)
T ss_dssp HSSEEEEEECSSS--HHHHHHH-HHHHHTTSEEEEEECCCCT
T ss_pred HCCEEEEECCCCCCCCcHHHHH-HHHHHCCCEEEEEEcCCcc
Confidence 3456777776656788988884 4566688899999988775
No 199
>COG3958 Transketolase, C-terminal subunit [Carbohydrate transport and metabolism]
Probab=30.34 E-value=49 Score=30.64 Aligned_cols=66 Identities=18% Similarity=0.041 Sum_probs=43.2
Q ss_pred CchhhhHHHHHhhhcCCCCeEEEEEcCCccchhhHHHHHHHH-HHcCCCEEEEEecCCccccccccccccCCCc
Q 026778 148 QLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFS-AVTEAPVIFICRNNGWAISTPISDQFRSIPS 220 (233)
Q Consensus 148 ~~~~A~G~A~a~k~~~~~~vvv~~~GDG~~~~G~~~Ealn~A-~~~~lPvvfvv~nN~~ais~~~~~q~~~~~~ 220 (233)
.++.|+|+|++-|+ ..+|.+ +..-.+..||=+..+ +..+|||-+|+.+-+++...--+.-...+++
T Consensus 61 mvg~AAGLA~~Gk~-----Pfv~tf--a~F~s~Ra~EQir~~iay~~lnVKiv~t~~G~t~g~dG~sHq~~EDi 127 (312)
T COG3958 61 MVGTAAGLALAGKK-----PFVSTF--AAFLSRRAWEQIRNSIAYNNLNVKIVATHAGVTYGEDGSSHQALEDI 127 (312)
T ss_pred HHHHHHHHHhcCCC-----ceeech--HHHHHHHHHHHHHHHhhhccCCeEEEEecCCcccCCCCccchhHHHH
Confidence 35567888887653 233333 567777778877766 5568999999999997666433333345554
No 200
>PF02639 DUF188: Uncharacterized BCR, YaiI/YqxD family COG1671; InterPro: IPR003791 This entry describes proteins of unknown function.
Probab=29.93 E-value=46 Score=26.80 Aligned_cols=25 Identities=16% Similarity=0.215 Sum_probs=20.4
Q ss_pred HHHHHHHHcCCCEEEEEecCCcccc
Q 026778 184 AALNFSAVTEAPVIFICRNNGWAIS 208 (233)
Q Consensus 184 Ealn~A~~~~lPvvfvv~nN~~ais 208 (233)
|-++.|..+++|++||++-+-+--.
T Consensus 1 ei~~~a~r~~i~vi~Van~~h~~~~ 25 (130)
T PF02639_consen 1 EIIRVAKRYGIPVIFVANYSHRLPR 25 (130)
T ss_pred CHHHHHHHHCCEEEEEeCCCccCCC
Confidence 4578999999999999998865444
No 201
>cd01461 vWA_interalpha_trypsin_inhibitor vWA_interalpha trypsin inhibitor (ITI): ITI is a glycoprotein composed of three polypeptides- two heavy chains and one light chain (bikunin). Bikunin confers the protease-inhibitor function while the heavy chains are involved in rendering stability to the extracellular matrix by binding to hyaluronic acid. The heavy chains carry the VWA domain with a conserved MIDAS motif. Although the exact role of the VWA domains remains unknown, it has been speculated to be involved in mediating protein-protein interactions with the components of the extracellular matrix.
Probab=29.79 E-value=1.5e+02 Score=23.28 Aligned_cols=36 Identities=6% Similarity=0.058 Sum_probs=22.0
Q ss_pred CCeEEEEEcCCccchhh-HHHHHHHHHHcCCCEEEEE
Q 026778 165 DACAVTYFGDGGTSEGD-FHAALNFSAVTEAPVIFIC 200 (233)
Q Consensus 165 ~~vvv~~~GDG~~~~G~-~~Ealn~A~~~~lPvvfvv 200 (233)
....++++.||...... +.+.++.+...+.++.+|-
T Consensus 99 ~~~~iillTDG~~~~~~~~~~~~~~~~~~~i~i~~i~ 135 (171)
T cd01461 99 SVPQIILLTDGEVTNESQILKNVREALSGRIRLFTFG 135 (171)
T ss_pred CccEEEEEeCCCCCCHHHHHHHHHHhcCCCceEEEEE
Confidence 45789999999975542 3344444433456655444
No 202
>PF00205 TPP_enzyme_M: Thiamine pyrophosphate enzyme, central domain; InterPro: IPR012000 A number of enzymes require thiamine pyrophosphate (TPP) (vitamin B1) as a cofactor. It has been shown [] that some of these enzymes are structurally related. This central domain of TPP enzymes contains a 2-fold Rossman fold. ; GO: 0000287 magnesium ion binding, 0030976 thiamine pyrophosphate binding; PDB: 1OZH_C 1OZF_B 1OZG_B 2Q29_B 2Q28_A 2Q27_B 1OVM_B 1PVD_A 1PYD_B 2VK1_C ....
Probab=29.43 E-value=25 Score=27.43 Aligned_cols=31 Identities=19% Similarity=0.243 Sum_probs=27.3
Q ss_pred eEEEEEcCCccchhhHHHHHHHHHHcCCCEE
Q 026778 167 CAVTYFGDGGTSEGDFHAALNFSAVTEAPVI 197 (233)
Q Consensus 167 vvv~~~GDG~~~~G~~~Ealn~A~~~~lPvv 197 (233)
..+.++|.|+...+...|...+|..+++|++
T Consensus 13 rP~il~G~g~~~~~a~~~l~~lae~~~~Pv~ 43 (137)
T PF00205_consen 13 RPVILAGRGARRSGAAEELRELAEKLGIPVA 43 (137)
T ss_dssp SEEEEE-HHHHHTTCHHHHHHHHHHHTSEEE
T ss_pred CEEEEEcCCcChhhHHHHHHHHHHHHCCCEE
Confidence 4688999999999999999999999999994
No 203
>COG1334 FlaG Uncharacterized flagellar protein FlaG [Cell motility and secretion]
Probab=29.39 E-value=69 Score=25.65 Aligned_cols=37 Identities=14% Similarity=0.127 Sum_probs=26.9
Q ss_pred CCCCCCCCeeEEeCCCCCCCCCCCCCCCCHHHHHHHHHHHH
Q 026778 6 ESSEERIPCYRVLDDDGQPFPDSSFVKVSEGVAIKMYNDMV 46 (233)
Q Consensus 6 ~~~~~~~~~~~vl~~~g~~~~~~~~~~~s~e~l~~lyr~M~ 46 (233)
-++....+.+.|.|.+..-+- ..+++|+++++|+.|-
T Consensus 73 ~dd~lg~~vVkI~d~~TgeVI----RqIPpee~L~l~~r~~ 109 (120)
T COG1334 73 YDDELGELVVKIIDKDTGEVI----RQIPPEEALELAARMR 109 (120)
T ss_pred EecccCcEEEEEEECCCCcch----hhCChHHHHHHHHHHH
Confidence 344566788999998864322 2478999999999884
No 204
>cd02958 UAS UAS family; UAS is a domain of unknown function. Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),
Probab=29.29 E-value=64 Score=24.31 Aligned_cols=27 Identities=11% Similarity=0.126 Sum_probs=22.1
Q ss_pred hhhHHHHHHHHHHcCCCEEEEEecCCc
Q 026778 179 EGDFHAALNFSAVTEAPVIFICRNNGW 205 (233)
Q Consensus 179 ~G~~~Ealn~A~~~~lPvvfvv~nN~~ 205 (233)
+|+|.||++.|...+.|+++.+.++.-
T Consensus 3 ~gs~~~a~~~Ak~~~K~llv~~~~~~c 29 (114)
T cd02958 3 QGSFEDAKQEAKSEKKWLLVYLQSEDE 29 (114)
T ss_pred cCCHHHHHHHHHhhCceEEEEEecCCc
Confidence 588999999999999998777766554
No 205
>TIGR00315 cdhB CO dehydrogenase/acetyl-CoA synthase complex, epsilon subunit. Nomenclature follows the description for Methanosarcina thermophila. The complex is also found in Archaeoglobus fulgidus, not considered a methanogen, but is otherwise generally associated with methanogenesis.
Probab=29.23 E-value=80 Score=26.40 Aligned_cols=36 Identities=11% Similarity=0.173 Sum_probs=30.2
Q ss_pred CeEEEEEcCCccchhhHHHHHHHHHHcCCCEEEEEe
Q 026778 166 ACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICR 201 (233)
Q Consensus 166 ~vvv~~~GDG~~~~G~~~Ealn~A~~~~lPvvfvv~ 201 (233)
+..+.++|-|+.+.+...+...+|...++||+--..
T Consensus 28 KRPvIivG~ga~~~~a~e~l~~laEklgiPVvtT~~ 63 (162)
T TIGR00315 28 KRPLLIVGPENLEDEEKELIVKFIEKFDLPVVATAD 63 (162)
T ss_pred CCcEEEECCCcCcccHHHHHHHHHHHHCCCEEEcCc
Confidence 457788999999888889999999999999975443
No 206
>PF01745 IPT: Isopentenyl transferase; InterPro: IPR002648 Isopentenyl transferase / dimethylallyl transferase synthesizes isopentenyladensosine 5'-monophosphate, a cytokinin that induces shoot formation on host plants infected with the Ti plasmid [].; GO: 0004161 dimethylallyltranstransferase activity, 0009058 biosynthetic process; PDB: 2ZE8_C 2ZE5_A 2ZE7_A 2ZE6_A.
Probab=28.74 E-value=70 Score=28.46 Aligned_cols=58 Identities=24% Similarity=0.239 Sum_probs=35.2
Q ss_pred EEEEcCCccchhhHHHHHHHHHHcCCCEEEEEecCCccccccccccccCCCchhhhcccccccc
Q 026778 169 VTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSIPSLPCLSNILTILL 232 (233)
Q Consensus 169 v~~~GDG~~~~G~~~Ealn~A~~~~lPvvfvv~nN~~ais~~~~~q~~~~~~~~~~~~~~~~~~ 232 (233)
++++ |.|..|-...|+..|...+.|||.. .+.++....... .+.+..+++.++++|-|
T Consensus 4 ~~i~--GpT~tGKt~~ai~lA~~~g~pvI~~---Driq~y~~l~v~-Sgrp~~~el~~~~RiyL 61 (233)
T PF01745_consen 4 YLIV--GPTGTGKTALAIALAQKTGAPVISL---DRIQCYPELSVG-SGRPTPSELKGTRRIYL 61 (233)
T ss_dssp EEEE---STTSSHHHHHHHHHHHH--EEEEE----SGGG-GGGTTT-TT---SGGGTT-EEEES
T ss_pred EEEE--CCCCCChhHHHHHHHHHhCCCEEEe---cceecccccccc-cCCCCHHHHcccceeee
Confidence 4444 6788899999999999999998753 344444333222 46788999999998865
No 207
>PF02844 GARS_N: Phosphoribosylglycinamide synthetase, N domain; InterPro: IPR020562 Phosphoribosylglycinamide synthetase (6.3.4.13 from EC) (GARS) (phosphoribosylamine glycine ligase) [] catalyses the second step in the de novo biosynthesis of purine. The reaction catalysed by phosphoribosylglycinamide synthetase is the ATP-dependent addition of 5-phosphoribosylamine to glycine to form 5'phosphoribosylglycinamide: ATP + 5-phosphoribosylamine + glycine = ADP + Pi + 5'-phosphoribosylglycinamide In bacteria, GARS is a monofunctional enzyme (encoded by the purD gene). In yeast, GARS is part of a bifunctional enzyme (encoded by the ADE5/7 gene) in conjunction with phosphoribosylformylglycinamidine cyclo-ligase (AIRS) (IPR000728 from INTERPRO). In higher eukaryotes, GARS is part of a trifunctional enzyme in conjunction with AIRS (IPR000728 from INTERPRO) and with phosphoribosylglycinamide formyltransferase (GART) (), forming GARS-AIRS-GART. This entry represents the N-domain, which is related to the N-terminal domain of biotin carboxylase/carbamoyl phosphate synthetase (IPR005481 from INTERPRO).; GO: 0004637 phosphoribosylamine-glycine ligase activity, 0009113 purine base biosynthetic process; PDB: 3MJF_A 2XD4_A 2XCL_A 2IP4_A 2YW2_B 2YYA_A 3LP8_A 1VKZ_A 2YS6_A 2YRX_A ....
Probab=28.71 E-value=2e+02 Score=22.08 Aligned_cols=46 Identities=20% Similarity=0.258 Sum_probs=32.1
Q ss_pred HHHHHhhhcCCCC--eEEEEEcCCccch---------hhHHHHHHHHHHcCCCEEEE
Q 026778 154 GAAYALKMDRKDA--CAVTYFGDGGTSE---------GDFHAALNFSAVTEAPVIFI 199 (233)
Q Consensus 154 G~A~a~k~~~~~~--vvv~~~GDG~~~~---------G~~~Ealn~A~~~~lPvvfv 199 (233)
-.|+|.|+...+. -++|.-|.+++.+ -++.+-+.+|..++..+++|
T Consensus 12 EHAia~~l~~s~~v~~v~~aPGN~G~~~~~~~~~~~~~d~~~l~~~a~~~~idlvvv 68 (100)
T PF02844_consen 12 EHAIAWKLSQSPSVEEVYVAPGNPGTAELGKNVPIDITDPEELADFAKENKIDLVVV 68 (100)
T ss_dssp HHHHHHHHTTCTTEEEEEEEE--TTGGGTSEEE-S-TT-HHHHHHHHHHTTESEEEE
T ss_pred HHHHHHHHhcCCCCCEEEEeCCCHHHHhhceecCCCCCCHHHHHHHHHHcCCCEEEE
Confidence 3577777766655 4688888887754 56778888999888888876
No 208
>PF08806 Sep15_SelM: Sep15/SelM redox domain; InterPro: IPR014912 Sep15 and SelM are eukaryotic selenoproteins that have a thioredoxin-like domain and a surface accessible active site redox motif []. This suggests that they function as thiol-disulphide isomerases involved in disulphide bond formation in the endoplasmic reticulum []. ; PDB: 2A4H_A 2A2P_A.
Probab=28.64 E-value=33 Score=25.22 Aligned_cols=33 Identities=21% Similarity=0.282 Sum_probs=20.4
Q ss_pred CCeeEEeCCCCCCCCCCCCCCCCHHHHHHHHHH
Q 026778 12 IPCYRVLDDDGQPFPDSSFVKVSEGVAIKMYND 44 (233)
Q Consensus 12 ~~~~~vl~~~g~~~~~~~~~~~s~e~l~~lyr~ 44 (233)
.|.+.++|.+|+.++.-.....+.|++.++...
T Consensus 42 ~P~L~l~d~~g~~~E~i~i~~w~~d~i~efL~~ 74 (78)
T PF08806_consen 42 PPELVLLDEDGEEVERINIEKWKTDEIEEFLNE 74 (78)
T ss_dssp --EEEEE-SSS--SEEEE-SSSSHCHHHHHHHH
T ss_pred CCEEEEEcCCCCEEEEEEcccCCHHHHHHHHHH
Confidence 488999999999876544456788888877653
No 209
>PF10087 DUF2325: Uncharacterized protein conserved in bacteria (DUF2325); InterPro: IPR016772 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=28.47 E-value=1.6e+02 Score=21.71 Aligned_cols=33 Identities=9% Similarity=0.135 Sum_probs=28.0
Q ss_pred CCeEEEEEcCCccchhhHHHHHHHHHHcCCCEEEE
Q 026778 165 DACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFI 199 (233)
Q Consensus 165 ~~vvv~~~GDG~~~~G~~~Ealn~A~~~~lPvvfv 199 (233)
..+||+++ +..+....|.+-..|..++.|++|.
T Consensus 49 aD~VIv~t--~~vsH~~~~~vk~~akk~~ip~~~~ 81 (97)
T PF10087_consen 49 ADLVIVFT--DYVSHNAMWKVKKAAKKYGIPIIYS 81 (97)
T ss_pred CCEEEEEe--CCcChHHHHHHHHHHHHcCCcEEEE
Confidence 35677777 4688999999999999999999987
No 210
>PF12637 TSCPD: TSCPD domain; InterPro: IPR024434 The domain is found in isolation in many proteins where it has a conserved C-terminal motif TSCPD, after which the domain is named. Most copies of the domain possess 4 conserved cysteines that may be part of an Iron-sulphur cluster. This domain is found at the C terminus of some ribonucleoside-diphosphate reductase enzymes.
Probab=27.29 E-value=1.5e+02 Score=22.32 Aligned_cols=46 Identities=20% Similarity=0.221 Sum_probs=29.7
Q ss_pred hhhhhcCCCHHHHHHHHhcCCCCCCCCCCCCcccCCCccccccccccCCCCchhhhHHHHHh
Q 026778 98 GVLLWRGFSMQEFANQCFGNKADYGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYAL 159 (233)
Q Consensus 98 ~~~l~rG~~~~~~l~e~~g~~~g~~~Gr~~~~H~~~~~~~~~~~~g~lG~~~~~A~G~A~a~ 159 (233)
..+|..|+|+++++.++-|-..++... + .+....++|-+++-++..
T Consensus 48 S~~Lr~G~~~~~ii~~L~gi~~~~~~~--------------~--~~~~~~S~~D~Ia~~L~~ 93 (95)
T PF12637_consen 48 SLALRSGVPPEEIIDQLRGIRCGPSGT--------------V--GGSRVTSCPDAIAKALEE 93 (95)
T ss_pred HHHHHcCCCHHHHHHHhcCCCCCCCCc--------------c--CCCccCcHHHHHHHHHHH
Confidence 356678999999999988775433211 0 114556677777777654
No 211
>TIGR03845 sulfopyru_alph sulfopyruvate decarboxylase, alpha subunit. This model represents the alpha subunit, or the N-terminal region, of sulfopyruvate decarboxylase, an enzyme of coenzyme M biosynthesis. Coenzyme M is found almost exclusively in the methanogenic archaea. However, the enzyme also occurs in Roseovarius nubinhibens ISM in a degradative pathway, where the resulting sulfoacetaldehyde is desulfonated to acetyl phosphate, then converted to acetyl-CoA (see PubMed:19581363).
Probab=27.29 E-value=1.8e+02 Score=23.75 Aligned_cols=33 Identities=18% Similarity=0.138 Sum_probs=24.2
Q ss_pred CCeEEEEEcCCccchhhHHHHHHHHH-HcCCCEEEEE
Q 026778 165 DACAVTYFGDGGTSEGDFHAALNFSA-VTEAPVIFIC 200 (233)
Q Consensus 165 ~~vvv~~~GDG~~~~G~~~Ealn~A~-~~~lPvvfvv 200 (233)
...++|..+=|- |..--+|-.|. ..++|+|+++
T Consensus 58 ~~~~v~~~~sG~---gn~~~~l~~a~~~~~~Pvl~i~ 91 (157)
T TIGR03845 58 KKPAILMQSSGL---GNSINALASLNKTYGIPLPILA 91 (157)
T ss_pred CCcEEEEeCCcH---HHHHHHHHHHHHcCCCCEEEEE
Confidence 345577777763 35666777888 8899999999
No 212
>PRK11337 DNA-binding transcriptional repressor RpiR; Provisional
Probab=27.16 E-value=1.8e+02 Score=25.66 Aligned_cols=43 Identities=16% Similarity=0.193 Sum_probs=34.8
Q ss_pred hhcCCCCeEEEEEcCCccchhhHHHHHHHHHHcCCCEEEEEecCC
Q 026778 160 KMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNG 204 (233)
Q Consensus 160 k~~~~~~vvv~~~GDG~~~~G~~~Ealn~A~~~~lPvvfvv~nN~ 204 (233)
...+++.+++++---|.+.+ .-+++..|...+.|+|.|..|..
T Consensus 183 ~~~~~~Dl~I~iS~sG~t~~--~~~~~~~ak~~g~~ii~IT~~~~ 225 (292)
T PRK11337 183 ALLQEGDVVLVVSHSGRTSD--VIEAVELAKKNGAKIICITNSYH 225 (292)
T ss_pred hcCCCCCEEEEEeCCCCCHH--HHHHHHHHHHCCCeEEEEeCCCC
Confidence 34566788888888887765 78999999999999999997753
No 213
>cd01453 vWA_transcription_factor_IIH_type Transcription factors IIH type: TFIIH is a multiprotein complex that is one of the five general transcription factors that binds RNA polymerase II holoenzyme. Orthologues of these genes are found in all completed eukaryotic genomes and all these proteins contain a VWA domain. The p44 subunit of TFIIH functions as a DNA helicase in RNA polymerase II transcription initiation and DNA repair, and its transcriptional activity is dependent on its C-terminal Zn-binding domains. The function of the vWA domain is unclear, but may be involved in complex assembly. The MIDAS motif is not conserved in this sub-group.
Probab=27.08 E-value=2e+02 Score=23.79 Aligned_cols=34 Identities=15% Similarity=0.166 Sum_probs=23.2
Q ss_pred CeEEEEEcCCccch-hhHHHHHHHHHHcCCCEEEE
Q 026778 166 ACAVTYFGDGGTSE-GDFHAALNFSAVTEAPVIFI 199 (233)
Q Consensus 166 ~vvv~~~GDG~~~~-G~~~Ealn~A~~~~lPvvfv 199 (233)
+.++++++||+... +++.+++..+...++++-.|
T Consensus 108 ~~iiil~sd~~~~~~~~~~~~~~~l~~~~I~v~~I 142 (183)
T cd01453 108 REVLIIFSSLSTCDPGNIYETIDKLKKENIRVSVI 142 (183)
T ss_pred eEEEEEEcCCCcCChhhHHHHHHHHHHcCcEEEEE
Confidence 34677888887653 45667777787778776443
No 214
>PRK13936 phosphoheptose isomerase; Provisional
Probab=26.46 E-value=2.1e+02 Score=24.06 Aligned_cols=42 Identities=12% Similarity=0.217 Sum_probs=34.6
Q ss_pred hcCCCCeEEEEEcCCccchhhHHHHHHHHHHcCCCEEEEEecCC
Q 026778 161 MDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNG 204 (233)
Q Consensus 161 ~~~~~~vvv~~~GDG~~~~G~~~Ealn~A~~~~lPvvfvv~nN~ 204 (233)
...++.+++++-..|.+.+ ..+++..|...+.|+|.+..+++
T Consensus 108 ~~~~~Dv~i~iS~sG~t~~--~~~~~~~ak~~g~~iI~IT~~~~ 149 (197)
T PRK13936 108 LGQPGDVLLAISTSGNSAN--VIQAIQAAHEREMHVVALTGRDG 149 (197)
T ss_pred hCCCCCEEEEEeCCCCcHH--HHHHHHHHHHCCCeEEEEECCCC
Confidence 3467788999888887554 68999999999999999998654
No 215
>PF04122 CW_binding_2: Putative cell wall binding repeat 2; InterPro: IPR007253 This repeat is found in multiple tandem copies in proteins including amidase enhancers [] and adhesins [].
Probab=25.99 E-value=2.1e+02 Score=20.74 Aligned_cols=43 Identities=26% Similarity=0.234 Sum_probs=26.8
Q ss_pred HHHHhhhcC--CCCeEEEEEcCCccchhhHHHHHHHHHHcCCCEEEEE
Q 026778 155 AAYALKMDR--KDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFIC 200 (233)
Q Consensus 155 ~A~a~k~~~--~~~vvv~~~GDG~~~~G~~~Ealn~A~~~~lPvvfvv 200 (233)
.+++.++.. ....++..-|+. .-+.-.+..+|+..+.|++++=
T Consensus 13 ~~va~~~~~~~~~~~v~ia~g~~---~~Dalsa~~~a~~~~~PIll~~ 57 (92)
T PF04122_consen 13 AKVAKKFYPDNKSDKVYIASGDN---FADALSASPLAAKNNAPILLVN 57 (92)
T ss_pred HHHHHHhcccCCCCEEEEEeCcc---hhhhhhhHHHHHhcCCeEEEEC
Confidence 445555433 334455555544 4455667778888899999876
No 216
>COG5123 TOA2 Transcription initiation factor IIA, gamma subunit [Transcription]
Probab=25.78 E-value=1e+02 Score=24.15 Aligned_cols=29 Identities=17% Similarity=0.193 Sum_probs=25.7
Q ss_pred HHHHHHHHHHHhHHHHHHHHHHhcCcccc
Q 026778 38 AIKMYNDMVTLQTMDTIFYEAQRQGRISF 66 (233)
Q Consensus 38 l~~lyr~M~~~R~~d~~~~~l~r~G~i~~ 66 (233)
.-++||+......+++.+-++..+|+|.+
T Consensus 4 yYElYRrs~ig~~L~dalD~lis~g~isp 32 (113)
T COG5123 4 YYELYRRSMIGKVLEDALDELISAGVISP 32 (113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCcCH
Confidence 46899999999999999999999998753
No 217
>PRK08659 2-oxoglutarate ferredoxin oxidoreductase subunit alpha; Validated
Probab=25.67 E-value=1.2e+02 Score=28.49 Aligned_cols=100 Identities=18% Similarity=0.255 Sum_probs=54.6
Q ss_pred CcchHHHHHHHHhccCCCCeEecCCccchhhhhcCCCHHHHHHHHhcCCCCCCCCCCCCcccCCCccccccccccCCCCc
Q 026778 70 TSGEEAINIASAAAIKNDDFVVPQYREPGVLLWRGFSMQEFANQCFGNKADYGKGRQMPIHYGSNKHNYFTVSSTIATQL 149 (233)
Q Consensus 70 ~~GqEa~~vg~~~aL~~~D~~~~~yR~~~~~l~rG~~~~~~l~e~~g~~~g~~~Gr~~~~H~~~~~~~~~~~~g~lG~~~ 149 (233)
-.|.||++.|+..+ .-| ++..|- ++|..-+.|.+.+.-... | ..+. ....=-+.+
T Consensus 7 ~~GNeAiA~ga~~a--g~~-~~a~YP---------ITPsTei~e~la~~~~~~-~-----------~~~v-q~E~E~aA~ 61 (376)
T PRK08659 7 LQGNEACAEGAIAA--GCR-FFAGYP---------ITPSTEIAEVMARELPKV-G-----------GVFI-QMEDEIASM 61 (376)
T ss_pred eehHHHHHHHHHHh--CCC-EEEEcC---------CCChHHHHHHHHHhhhhh-C-----------CEEE-EeCchHHHH
Confidence 36889987665433 123 444444 555555555665421100 0 0111 111222345
Q ss_pred hhhhHHHHHhhhcCCCCeEEEEEcCCccchh--hHHHHHHHHHHcCCCEEEEEecCC
Q 026778 150 PHAVGAAYALKMDRKDACAVTYFGDGGTSEG--DFHAALNFSAVTEAPVIFICRNNG 204 (233)
Q Consensus 150 ~~A~G~A~a~k~~~~~~vvv~~~GDG~~~~G--~~~Ealn~A~~~~lPvvfvv~nN~ 204 (233)
..|+|.+++-. .+++.. +++| --+|.+.+|+...+|+|+++-+-.
T Consensus 62 ~~a~GAs~aG~------Ra~TaT----Sg~Gl~lm~E~~~~a~~~e~P~Viv~~~R~ 108 (376)
T PRK08659 62 AAVIGASWAGA------KAMTAT----SGPGFSLMQENIGYAAMTETPCVIVNVQRG 108 (376)
T ss_pred HHHHhHHhhCC------CeEeec----CCCcHHHHHHHHHHHHHcCCCEEEEEeecC
Confidence 66777777654 244443 3344 238999999999999888776643
No 218
>PF13519 VWA_2: von Willebrand factor type A domain; PDB: 3IBS_B 3RAG_B 2X5N_A.
Probab=25.65 E-value=98 Score=23.90 Aligned_cols=35 Identities=11% Similarity=0.035 Sum_probs=23.6
Q ss_pred CCeEEEEEcCCccchhhHHHHHHHHHHcCCCEEEEE
Q 026778 165 DACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFIC 200 (233)
Q Consensus 165 ~~vvv~~~GDG~~~~G~~~Ealn~A~~~~lPvvfvv 200 (233)
.+..++++.||.-+ +...+.++.+...+.++.+|-
T Consensus 99 ~~~~iv~iTDG~~~-~~~~~~~~~~~~~~i~i~~v~ 133 (172)
T PF13519_consen 99 RRRAIVLITDGEDN-SSDIEAAKALKQQGITIYTVG 133 (172)
T ss_dssp EEEEEEEEES-TTH-CHHHHHHHHHHCTTEEEEEEE
T ss_pred CceEEEEecCCCCC-cchhHHHHHHHHcCCeEEEEE
Confidence 46789999999777 555567777766666654443
No 219
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=25.46 E-value=1.7e+02 Score=29.41 Aligned_cols=56 Identities=16% Similarity=0.100 Sum_probs=34.9
Q ss_pred CCCCchhhhHHHHHhhhcC-------CCCeEEEEEcCCccchh-----hHHHHHHHHHH---cCCCEEEEE
Q 026778 145 IATQLPHAVGAAYALKMDR-------KDACAVTYFGDGGTSEG-----DFHAALNFSAV---TEAPVIFIC 200 (233)
Q Consensus 145 lG~~~~~A~G~A~a~k~~~-------~~~vvv~~~GDG~~~~G-----~~~Ealn~A~~---~~lPvvfvv 200 (233)
.|+.-+++.|+..|.++.. ....+++++.||..+.+ ...+++..|.. .++++++|-
T Consensus 537 ~gG~Tpl~~aL~~A~~~l~~~~~~~~~~~~~vvliTDG~~n~~~~~~~~~~~~~~~a~~l~~~~i~~~vId 607 (633)
T TIGR02442 537 TGGRTPLAAGLLKAAEVLSNELLRDDDGRPLLVVITDGRANVADGGEPPTDDARTIAAKLAARGILFVVID 607 (633)
T ss_pred CCCCCCHHHHHHHHHHHHHHhhccCCCCceEEEEECCCCCCCCCCCCChHHHHHHHHHHHHhcCCeEEEEe
Confidence 4556666777766664432 34578999999998764 24455555544 456665553
No 220
>TIGR00441 gmhA phosphoheptose isomerase. Involved in lipopolysaccharide biosynthesis it may have a role in virulence in Haemophilus ducreyi.
Probab=25.44 E-value=1.9e+02 Score=23.24 Aligned_cols=41 Identities=12% Similarity=0.180 Sum_probs=33.1
Q ss_pred cCCCCeEEEEEcCCccchhhHHHHHHHHHHcCCCEEEEEecCC
Q 026778 162 DRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNG 204 (233)
Q Consensus 162 ~~~~~vvv~~~GDG~~~~G~~~Ealn~A~~~~lPvvfvv~nN~ 204 (233)
.+++.+++++-.-|.+. +.-+++..|...+.|+|.++.|.+
T Consensus 77 ~~~~D~~i~iS~sG~t~--~~~~~~~~a~~~g~~ii~iT~~~~ 117 (154)
T TIGR00441 77 GQKGDVLLGISTSGNSK--NVLKAIEAAKDKGMKTITLAGKDG 117 (154)
T ss_pred CCCCCEEEEEcCCCCCH--HHHHHHHHHHHCCCEEEEEeCCCC
Confidence 36677888888888654 458999999999999999997654
No 221
>cd01462 VWA_YIEM_type VWA YIEM type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if
Probab=25.16 E-value=2.2e+02 Score=22.12 Aligned_cols=34 Identities=9% Similarity=0.163 Sum_probs=19.3
Q ss_pred CeEEEEEcCCc-cchh-hHHHHHHHHHHcCCCEEEE
Q 026778 166 ACAVTYFGDGG-TSEG-DFHAALNFSAVTEAPVIFI 199 (233)
Q Consensus 166 ~vvv~~~GDG~-~~~G-~~~Ealn~A~~~~lPvvfv 199 (233)
+..++++.||- .... .+.+..+.+...+.+|-.+
T Consensus 95 ~~~ivliTDG~~~~~~~~~~~~~~~~~~~~~~v~~~ 130 (152)
T cd01462 95 KADIVLITDGYEGGVSDELLREVELKRSRVARFVAL 130 (152)
T ss_pred CceEEEECCCCCCCCCHHHHHHHHHHHhcCcEEEEE
Confidence 56899999993 2222 2224455665556665433
No 222
>PF00185 OTCace: Aspartate/ornithine carbamoyltransferase, Asp/Orn binding domain; InterPro: IPR006131 This family contains two related enzymes: Aspartate carbamoyltransferase (2.1.3.2 from EC) (ATCase) catalyzes the conversion of aspartate and carbamoyl phosphate to carbamoylaspartate, the second step in the de novo biosynthesis of pyrimidine nucleotides []. In prokaryotes ATCase consists of two subunits: a catalytic chain (gene pyrB) and a regulatory chain (gene pyrI), while in eukaryotes it is a domain in a multi- functional enzyme (called URA2 in yeast, rudimentary in Drosophila, and CAD in mammals []) that also catalyzes other steps of the biosynthesis of pyrimidines. Ornithine carbamoyltransferase (2.1.3.3 from EC) (OTCase) catalyzes the conversion of ornithine and carbamoyl phosphate to citrulline. In mammals this enzyme participates in the urea cycle [] and is located in the mitochondrial matrix. In prokaryotes and eukaryotic microorganisms it is involved in the biosynthesis of arginine. In some bacterial species it is also involved in the degradation of arginine [] (the arginine deaminase pathway). It has been shown [] that these two enzymes are evolutionary related. The predicted secondary structure of both enzymes are similar and there are some regions of sequence similarities. One of these regions includes three residues which have been shown, by crystallographic studies [], to be implicated in binding the phosphoryl group of carbamoyl phosphate and is described by IPR006132 from INTERPRO. The carboxyl-terminal, aspartate/ornithine-binding domain is connected to the amino-terminal domain by two alpha-helices, which comprise a hinge between domains [].; GO: 0016597 amino acid binding, 0016743 carboxyl- or carbamoyltransferase activity, 0006520 cellular amino acid metabolic process; PDB: 1ML4_A 4EP1_B 3Q98_A 3E2P_A 2RGW_E 4EKN_B 2G7M_E 3D6N_B 3M4J_A 3L06_A ....
Probab=24.38 E-value=1.2e+02 Score=24.69 Aligned_cols=34 Identities=21% Similarity=0.339 Sum_probs=24.3
Q ss_pred CCeEEEEEcCCccchhhHHHHHHHHHHcCCCEEEEE
Q 026778 165 DACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFIC 200 (233)
Q Consensus 165 ~~vvv~~~GDG~~~~G~~~Ealn~A~~~~lPvvfvv 200 (233)
++..++++|| ......+.-+..++.++..+.+++
T Consensus 1 ~gl~i~~vGD--~~~rv~~Sl~~~~~~~g~~~~~~~ 34 (158)
T PF00185_consen 1 KGLKIAYVGD--GHNRVAHSLIELLAKFGMEVVLIA 34 (158)
T ss_dssp TTEEEEEESS--TTSHHHHHHHHHHHHTTSEEEEES
T ss_pred CCCEEEEECC--CCChHHHHHHHHHHHcCCEEEEEC
Confidence 3578999999 334445666888888888866555
No 223
>KOG1615 consensus Phosphoserine phosphatase [Amino acid transport and metabolism]
Probab=24.14 E-value=65 Score=28.32 Aligned_cols=77 Identities=12% Similarity=0.069 Sum_probs=42.5
Q ss_pred CCccchhhhh--cCCCHHHHHHHHhcCCCCCCCCCCCCcccCCCccccccccccCCCCchhhhHHHHHhhhcCCCCeEEE
Q 026778 93 QYREPGVLLW--RGFSMQEFANQCFGNKADYGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVT 170 (233)
Q Consensus 93 ~yR~~~~~l~--rG~~~~~~l~e~~g~~~g~~~Gr~~~~H~~~~~~~~~~~~g~lG~~~~~A~G~A~a~k~~~~~~vvv~ 170 (233)
-+|.....++ .|+|...+.+..+==.. .| +-++|. .++|+.-+- .=+-+++...++.+.-++|
T Consensus 113 GF~~~i~~Va~~Lgi~~~n~yAN~l~fd~---~G---------k~~gfd-~~~ptsdsg--gKa~~i~~lrk~~~~~~~~ 177 (227)
T KOG1615|consen 113 GFRQLIEPVAEQLGIPKSNIYANELLFDK---DG---------KYLGFD-TNEPTSDSG--GKAEVIALLRKNYNYKTIV 177 (227)
T ss_pred ChHHHHHHHHHHhCCcHhhhhhheeeecc---CC---------cccccc-cCCccccCC--ccHHHHHHHHhCCChheeE
Confidence 4777765554 67887777665432111 01 112221 222222211 2345566666677888999
Q ss_pred EEcCCccchhhHHH
Q 026778 171 YFGDGGTSEGDFHA 184 (233)
Q Consensus 171 ~~GDG~~~~G~~~E 184 (233)
.+|||++.--..-+
T Consensus 178 mvGDGatDlea~~p 191 (227)
T KOG1615|consen 178 MVGDGATDLEAMPP 191 (227)
T ss_pred EecCCccccccCCc
Confidence 99999987544444
No 224
>PLN03230 acetyl-coenzyme A carboxylase carboxyl transferase; Provisional
Probab=24.01 E-value=92 Score=30.20 Aligned_cols=42 Identities=7% Similarity=-0.051 Sum_probs=27.3
Q ss_pred HHHHHHHHHcCCCEEEEEecCCccccccccccccCCCchhhh
Q 026778 183 HAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSIPSLPCL 224 (233)
Q Consensus 183 ~Ealn~A~~~~lPvvfvv~nN~~ais~~~~~q~~~~~~~~~~ 224 (233)
-..+.+|..+++|||++|+--++-.+.-.++.-....++.++
T Consensus 211 lR~mklAekf~lPIVtLVDTpGA~pG~~AEe~Gqa~aIAr~l 252 (431)
T PLN03230 211 LRFMRHAEKFGFPILTFVDTPGAYAGIKAEELGQGEAIAFNL 252 (431)
T ss_pred HHHHHHHHHcCCCEEEEEeCCCcCCCHHHHHHhHHHHHHHHH
Confidence 344667888999999999999876665444322233344444
No 225
>PRK00414 gmhA phosphoheptose isomerase; Reviewed
Probab=23.97 E-value=2.5e+02 Score=23.56 Aligned_cols=41 Identities=15% Similarity=0.239 Sum_probs=33.5
Q ss_pred cCCCCeEEEEEcCCccchhhHHHHHHHHHHcCCCEEEEEecCC
Q 026778 162 DRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNG 204 (233)
Q Consensus 162 ~~~~~vvv~~~GDG~~~~G~~~Ealn~A~~~~lPvvfvv~nN~ 204 (233)
..++.+++++-..|.+. +..+++..|...+.|+|.++.+++
T Consensus 109 ~~~~Dv~I~iS~SG~t~--~~i~~~~~ak~~g~~iI~iT~~~~ 149 (192)
T PRK00414 109 GREGDVLLGISTSGNSG--NIIKAIEAARAKGMKVITLTGKDG 149 (192)
T ss_pred CCCCCEEEEEeCCCCCH--HHHHHHHHHHHCCCeEEEEeCCCC
Confidence 36678888888888655 458999999999999999997754
No 226
>cd04918 ACT_AK1-AT_2 ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1). This CD includes the second of two ACT domains located C-terminal to the catalytic domain of a monofunctional, lysine-sensitive, plant aspartate kinase 1 (AK1), which can be synergistically inhibited by S-adenosylmethionine (SAM). This isoenzyme is found in higher plants, Arabidopsis thaliana (AT) and Zea mays, and also in Chlorophyta. In its inactive state, Arabidopsis AK1 binds the effectors lysine and SAM (two molecules each) at the interface of two ACT1 domain subunits. The second ACT domain (ACT2), this CD, does not interact with an effector. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=23.49 E-value=2.4e+02 Score=19.02 Aligned_cols=35 Identities=14% Similarity=0.133 Sum_probs=27.4
Q ss_pred eEEEEEcCCccchhhHHHHHHHHHHcCCCEEEEEe
Q 026778 167 CAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICR 201 (233)
Q Consensus 167 vvv~~~GDG~~~~G~~~Ealn~A~~~~lPvvfvv~ 201 (233)
-.++++|+.....|-..+.++.-+..++|+..+.+
T Consensus 2 a~VsvVG~~~~~~~~~~~i~~aL~~~~I~v~~i~~ 36 (65)
T cd04918 2 SIISLIGNVQRSSLILERAFHVLYTKGVNVQMISQ 36 (65)
T ss_pred cEEEEECCCCCCccHHHHHHHHHHHCCCCEEEEEe
Confidence 36899999766777677777777888999987774
No 227
>COG2008 GLY1 Threonine aldolase [Amino acid transport and metabolism]
Probab=23.13 E-value=1.4e+02 Score=28.02 Aligned_cols=51 Identities=18% Similarity=0.097 Sum_probs=38.4
Q ss_pred HHHhHHHHHHHHHHhcCcccccccCcchHHHHHHHHhccCCCCeEecCCccch
Q 026778 46 VTLQTMDTIFYEAQRQGRISFYLTTSGEEAINIASAAAIKNDDFVVPQYREPG 98 (233)
Q Consensus 46 ~~~R~~d~~~~~l~r~G~i~~~~~~~GqEa~~vg~~~aL~~~D~~~~~yR~~~ 98 (233)
-.+|.+|+++.++... ..-++...|--|-++++.+.++|++-++++.+.|-
T Consensus 35 ~~~~~~e~~~ae~~g~--~a~~Fv~sGT~aN~lal~~~~~~~~~vi~~~~aHi 85 (342)
T COG2008 35 PTTNALEQRIAELFGK--EAALFVPSGTQANQLALAAHCQPGESVICHETAHI 85 (342)
T ss_pred HHHHHHHHHHHHHhCC--ceEEEecCccHHHHHHHHHhcCCCCeEEEeccccc
Confidence 3568899999888755 43333345677889999999999999998866553
No 228
>PRK13938 phosphoheptose isomerase; Provisional
Probab=23.11 E-value=2.5e+02 Score=23.96 Aligned_cols=43 Identities=12% Similarity=0.088 Sum_probs=35.3
Q ss_pred hhcCCCCeEEEEEcCCccchhhHHHHHHHHHHcCCCEEEEEecCC
Q 026778 160 KMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNG 204 (233)
Q Consensus 160 k~~~~~~vvv~~~GDG~~~~G~~~Ealn~A~~~~lPvvfvv~nN~ 204 (233)
....++.+++++-.-|.+.+ .-+++..|...+.|+|.+..|.+
T Consensus 109 ~~~~~~DllI~iS~SG~t~~--vi~a~~~Ak~~G~~vI~iT~~~~ 151 (196)
T PRK13938 109 GSARPGDTLFAISTSGNSMS--VLRAAKTARELGVTVVAMTGESG 151 (196)
T ss_pred hcCCCCCEEEEEcCCCCCHH--HHHHHHHHHHCCCEEEEEeCCCC
Confidence 44567788888888887665 58999999999999999997665
No 229
>PRK10886 DnaA initiator-associating protein DiaA; Provisional
Probab=22.93 E-value=1.9e+02 Score=24.71 Aligned_cols=40 Identities=8% Similarity=0.205 Sum_probs=32.7
Q ss_pred CCCCeEEEEEcCCccchhhHHHHHHHHHHcCCCEEEEEecCC
Q 026778 163 RKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNG 204 (233)
Q Consensus 163 ~~~~vvv~~~GDG~~~~G~~~Ealn~A~~~~lPvvfvv~nN~ 204 (233)
.++.+++++-+.|.+.+ .-+++..|...+.|+|.+.-+.+
T Consensus 108 ~~gDvli~iS~SG~s~~--v~~a~~~Ak~~G~~vI~IT~~~~ 147 (196)
T PRK10886 108 HAGDVLLAISTRGNSRD--IVKAVEAAVTRDMTIVALTGYDG 147 (196)
T ss_pred CCCCEEEEEeCCCCCHH--HHHHHHHHHHCCCEEEEEeCCCC
Confidence 56778888888887654 78999999999999999986544
No 230
>PF10609 ParA: ParA/MinD ATPase like; InterPro: IPR019591 This entry represents ATPases involved in plasmid partitioning []. It also contains cytosolic Fe-S cluster assembling factors, NBP35 and CFD1 which are required for biogenesis and export of both ribosomal subunits probably through assembling the ISCs in RLI1, a protein which performs rRNA processing and ribosome export [, , ].; PDB: 2PH1_A 3KB1_B.
Probab=22.61 E-value=1.7e+02 Score=21.78 Aligned_cols=44 Identities=14% Similarity=0.194 Sum_probs=29.2
Q ss_pred CCCeEEEEEcCCccchhhHHHHHHHHHHcCCCEEEEEecCCcccc
Q 026778 164 KDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAIS 208 (233)
Q Consensus 164 ~~~vvv~~~GDG~~~~G~~~Ealn~A~~~~lPvvfvv~nN~~ais 208 (233)
.+..+++..-. ..+..++..+++++...++|++=+|||=.|-..
T Consensus 25 ~~g~ivVTTPq-~la~~dv~r~~~~~~~~~vpilGvVENMs~~~C 68 (81)
T PF10609_consen 25 IDGAIVVTTPQ-ELALADVRRAIDMFRKLNVPILGVVENMSYFVC 68 (81)
T ss_dssp -SEEEEEE-CC-C--HHHHHHHHHHHHCTT-EEEEEEECT-EEE-
T ss_pred CCeEEEEeCCH-HHHHHHHHHHHHHHHhcCCCcEEEEECCCccCC
Confidence 34444554444 577888999999999999999999999776544
No 231
>KOG3445 consensus Mitochondrial/chloroplast ribosomal protein 36a [Translation, ribosomal structure and biogenesis]
Probab=22.18 E-value=2e+02 Score=23.66 Aligned_cols=38 Identities=24% Similarity=0.375 Sum_probs=25.3
Q ss_pred CCeEEEEEcCCccchh--hHHHHHHHHHHcCCC-EEEEEec
Q 026778 165 DACAVTYFGDGGTSEG--DFHAALNFSAVTEAP-VIFICRN 202 (233)
Q Consensus 165 ~~vvv~~~GDG~~~~G--~~~Ealn~A~~~~lP-vvfvv~n 202 (233)
.++++.|+=+|+++.| +|-|.=-.+-..+-| |+|.+++
T Consensus 24 ~rit~sfCnwggSSrGmR~Fle~~L~~~a~enP~v~i~v~~ 64 (145)
T KOG3445|consen 24 RRITVSFCNWGGSSRGMREFLESELPDLARENPGVVIYVEP 64 (145)
T ss_pred eEEEEEEecCCCccHHHHHHHHHHHHHHHhhCCCeEEEEec
Confidence 4699999999999999 566654433333334 5555543
No 232
>cd01451 vWA_Magnesium_chelatase Magnesium chelatase: Mg-chelatase catalyses the insertion of Mg into protoporphyrin IX (Proto). In chlorophyll biosynthesis, insertion of Mg2+ into protoporphyrin IX is catalysed by magnesium chelatase in an ATP-dependent reaction. Magnesium chelatase is a three sub-unit (BchI, BchD and BchH) enzyme with a novel arrangement of domains: the C-terminal helical domain is located behind the nucleotide binding site. The BchD domain contains a AAA domain at its N-terminus and a VWA domain at its C-terminus. The VWA domain has been speculated to be involved in mediating protein-protein interactions.
Probab=22.15 E-value=2.7e+02 Score=22.53 Aligned_cols=35 Identities=17% Similarity=0.079 Sum_probs=23.9
Q ss_pred CeEEEEEcCCccchhh-----H-HHHHHHHHHcCCCEEEEE
Q 026778 166 ACAVTYFGDGGTSEGD-----F-HAALNFSAVTEAPVIFIC 200 (233)
Q Consensus 166 ~vvv~~~GDG~~~~G~-----~-~Ealn~A~~~~lPvvfvv 200 (233)
...++++.||..+.|. . .+....+...+++++.|.
T Consensus 99 ~~~ivliTDG~~~~g~~~~~~~~~~~~~~l~~~gi~v~~I~ 139 (178)
T cd01451 99 RPLIVVITDGRANVGPDPTADRALAAARKLRARGISALVID 139 (178)
T ss_pred ceEEEEECCCCCCCCCCchhHHHHHHHHHHHhcCCcEEEEe
Confidence 4789999999988653 1 344555566777776553
No 233
>smart00327 VWA von Willebrand factor (vWF) type A domain. VWA domains in extracellular eukaryotic proteins mediate adhesion via metal ion-dependent adhesion sites (MIDAS). Intracellular VWA domains and homologues in prokaryotes have recently been identified. The proposed VWA domains in integrin beta subunits have recently been substantiated using sequence-based methods.
Probab=21.90 E-value=3.5e+02 Score=20.78 Aligned_cols=38 Identities=18% Similarity=0.238 Sum_probs=30.2
Q ss_pred CeEEEEEcCCccchh-hHHHHHHHHHHcCCCEEEEEecC
Q 026778 166 ACAVTYFGDGGTSEG-DFHAALNFSAVTEAPVIFICRNN 203 (233)
Q Consensus 166 ~vvv~~~GDG~~~~G-~~~Ealn~A~~~~lPvvfvv~nN 203 (233)
...++++.||....+ ...+.+..+...+..++.|.-.+
T Consensus 106 ~~~iviitDg~~~~~~~~~~~~~~~~~~~i~i~~i~~~~ 144 (177)
T smart00327 106 PKVLILITDGESNDGGDLLKAAKELKRSGVKVFVVGVGN 144 (177)
T ss_pred CeEEEEEcCCCCCCCccHHHHHHHHHHCCCEEEEEEccC
Confidence 568999999999875 77888888888888776666544
No 234
>cd02004 TPP_BZL_OCoD_HPCL Thiamine pyrophosphate (TPP) family, BZL_OCoD_HPCL subfamily, TPP-binding module; composed of proteins similar to benzaldehyde lyase (BZL), oxalyl-CoA decarboxylase (OCoD) and 2-hydroxyphytanoyl-CoA lyase (2-HPCL). Pseudomonas fluorescens biovar I BZL cleaves the acyloin linkage of benzoin producing 2 molecules of benzaldehyde and enabling the Pseudomonas to grow on benzoin as the sole carbon and energy source. OCoD has a role in the detoxification of oxalate, catalyzing the decarboxylation of oxalyl-CoA to formate. 2-HPCL is a peroxisomal enzyme which plays a role in the alpha-oxidation of 3-methyl-branched fatty acids, catalyzing the cleavage of 2-hydroxy-3-methylacyl-CoA into formyl-CoA and a 2-methyl-branched fatty aldehyde. All these enzymes depend on Mg2+ and TPP for activity.
Probab=21.47 E-value=50 Score=26.83 Aligned_cols=14 Identities=21% Similarity=0.133 Sum_probs=8.3
Q ss_pred CCCeEEEEEcCCcc
Q 026778 164 KDACAVTYFGDGGT 177 (233)
Q Consensus 164 ~~~vvv~~~GDG~~ 177 (233)
+-.++++++=|++.
T Consensus 92 ~lpv~ivv~NN~~~ 105 (172)
T cd02004 92 NLPIVVVVGNNGGW 105 (172)
T ss_pred CCCEEEEEEECccc
Confidence 33566777766643
No 235
>cd07038 TPP_PYR_PDC_IPDC_like Pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC), indolepyruvate decarboxylase (IPDC) and related proteins. Thiamine pyrophosphate (TPP family), pyrimidine (PYR) binding domain of pyruvate decarboxylase (PDC) and indolepyruvate decarboxylase (IPDC) subfamily. The PYR domain is found in many key metabolic enzymes which use TPP (also known as thiamine diphosphate) as a cofactor. TPP binds in the cleft formed by a PYR domain and a PP domain. The PYR domain, binds the aminopyrimidine ring of TPP, the PP domain binds the diphosphate residue. The PYR and PP domains have a common fold, but do not share strong sequence conservation. The PP domain is not included in this sub-family. Most TPP-dependent enzymes have the PYR and PP domains on the same subunit although these domains can be alternatively arranged in the primary structure. TPP-dependent enzymes are multisubunit proteins, the smallest catalytic unit being a dimer-of-active sites, for many
Probab=21.41 E-value=1.7e+02 Score=23.76 Aligned_cols=48 Identities=23% Similarity=0.153 Sum_probs=31.5
Q ss_pred hhhhHHHHHhhhcCCCCeEEEEEcCCccchhhHHHHHHHHHHcCCCEEEEEecCC
Q 026778 150 PHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNG 204 (233)
Q Consensus 150 ~~A~G~A~a~k~~~~~~vvv~~~GDG~~~~G~~~Ealn~A~~~~lPvvfvv~nN~ 204 (233)
-.|.|.+.+. +..++++.-|=|.+| .--++-.|..-+.|+|+++-+..
T Consensus 49 ~mA~gyar~t----~~gv~~~t~GpG~~n---~~~gl~~A~~~~~Pvl~i~g~~~ 96 (162)
T cd07038 49 YAADGYARVK----GLGALVTTYGVGELS---ALNGIAGAYAEHVPVVHIVGAPS 96 (162)
T ss_pred HHHHHHHHhh----CCEEEEEcCCccHHH---HHHHHHHHHHcCCCEEEEecCCC
Confidence 3455555543 245555555777666 34677788888999999996554
No 236
>PRK08266 hypothetical protein; Provisional
Probab=21.32 E-value=1.5e+02 Score=28.75 Aligned_cols=47 Identities=19% Similarity=0.159 Sum_probs=32.5
Q ss_pred hhHHHHHh-hhcCCCCeEEEEEcCCccchhhHHHHHHHHHHcCCCEEEEEe
Q 026778 152 AVGAAYAL-KMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICR 201 (233)
Q Consensus 152 A~G~A~a~-k~~~~~~vvv~~~GDG~~~~G~~~Ealn~A~~~~lPvvfvv~ 201 (233)
|+.+|.+. |..++..++++..|=|.+|- --++-.|..-+.|+|+++-
T Consensus 55 A~~~A~gyar~tg~~~v~~~t~GpG~~N~---~~gi~~A~~~~~Pvl~i~g 102 (542)
T PRK08266 55 AGYMAFGYARSTGRPGVCSVVPGPGVLNA---GAALLTAYGCNSPVLCLTG 102 (542)
T ss_pred HHHHHHHHHHHhCCCeEEEECCCCcHHHH---HHHHHHHHhhCCCEEEEec
Confidence 44444443 33455667778888888773 3567788888999999984
No 237
>TIGR00168 infC translation initiation factor IF-3. render its expression particularly sensitive to excess of its gene product IF-3 thereby regulating its own expression
Probab=21.03 E-value=1.8e+02 Score=24.40 Aligned_cols=33 Identities=21% Similarity=0.372 Sum_probs=21.8
Q ss_pred CCCCCCCeeEEeCCCCCCCCCCCCCCCCHHHHHHHHHH
Q 026778 7 SSEERIPCYRVLDDDGQPFPDSSFVKVSEGVAIKMYND 44 (233)
Q Consensus 7 ~~~~~~~~~~vl~~~g~~~~~~~~~~~s~e~l~~lyr~ 44 (233)
|+....|.+||+|+||..++. ++..+.+++.+.
T Consensus 2 Ne~I~~~~Vrli~~dG~~lgv-----~~~~eAl~~A~~ 34 (165)
T TIGR00168 2 NERIRFNEVRLIDENGEQLGI-----VSREEALEIAEE 34 (165)
T ss_pred CcCcCCCEEEEECCCCcCCCc-----ccHHHHHHHHHH
Confidence 344667899999999987652 444555544443
No 238
>PRK13034 serine hydroxymethyltransferase; Reviewed
Probab=20.98 E-value=1.8e+02 Score=27.41 Aligned_cols=52 Identities=13% Similarity=0.027 Sum_probs=34.5
Q ss_pred HHhHHHH----HHHHHHhcCcccccccCcchHHHHHHHHhccCCCCeEecCCccchh
Q 026778 47 TLQTMDT----IFYEAQRQGRISFYLTTSGEEAINIASAAAIKNDDFVVPQYREPGV 99 (233)
Q Consensus 47 ~~R~~d~----~~~~l~r~G~i~~~~~~~GqEa~~vg~~~aL~~~D~~~~~yR~~~~ 99 (233)
..+.||+ ++.++.... -....++.|--|...++.+.++|+|.|+..--.|+.
T Consensus 71 ~~~~lE~~~~~~la~l~g~~-~alv~~~SG~~A~~~~l~al~~~GD~Vl~~~~~~~~ 126 (416)
T PRK13034 71 FVDEVEALAIERAKQLFGCD-YANVQPHSGSQANGAVYLALLKPGDTILGMSLSHGG 126 (416)
T ss_pred HHHHHHHHHHHHHHHHhCCC-ceEEecCCcHHHHHHHHHHhcCCCCEEEEcCcccee
Confidence 4577787 777766332 223345677888877777778999998875445544
No 239
>PRK07524 hypothetical protein; Provisional
Probab=20.86 E-value=1.6e+02 Score=28.60 Aligned_cols=49 Identities=20% Similarity=0.177 Sum_probs=34.6
Q ss_pred hhHHHHHh-hhcCCCCeEEEEEcCCccchhhHHHHHHHHHHcCCCEEEEEecC
Q 026778 152 AVGAAYAL-KMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNN 203 (233)
Q Consensus 152 A~G~A~a~-k~~~~~~vvv~~~GDG~~~~G~~~Ealn~A~~~~lPvvfvv~nN 203 (233)
|+.+|-+. |..++..++++..|=|.+|- --++-.|..-+.|||+++=..
T Consensus 51 A~~mAdgyar~tg~~gv~~~t~GpG~~n~---~~gi~~A~~~~~Pvl~i~G~~ 100 (535)
T PRK07524 51 AGFMADGYARVSGKPGVCFIITGPGMTNI---ATAMGQAYADSIPMLVISSVN 100 (535)
T ss_pred HHHHHHHHHHHhCCCeEEEECCCccHHHH---HHHHHHHHhcCCCEEEEeCCC
Confidence 45555543 34456678888888888774 467778888899999998543
No 240
>KOG1257 consensus NADP+-dependent malic enzyme [Energy production and conversion]
Probab=20.83 E-value=2.1e+02 Score=28.72 Aligned_cols=88 Identities=15% Similarity=0.115 Sum_probs=60.9
Q ss_pred ccCCCCchhhhHHHHHhhhcCC--CCeEEEEEcCCccchhhHHHHHHHHHHcCCC------EEEEEecCCccccccc-cc
Q 026778 143 STIATQLPHAVGAAYALKMDRK--DACAVTYFGDGGTSEGDFHAALNFSAVTEAP------VIFICRNNGWAISTPI-SD 213 (233)
Q Consensus 143 g~lG~~~~~A~G~A~a~k~~~~--~~vvv~~~GDG~~~~G~~~Ealn~A~~~~lP------vvfvv~nN~~ais~~~-~~ 213 (233)
.+-|++-..-+|+--|.|+.++ ..-++.|.|-|+..-|..+-.+..-...++| -||+++-|+.=...+. +-
T Consensus 285 DIQGTaaValAgllaa~rit~~~lsd~~ilf~GAG~A~~GIA~l~v~~m~~~Gl~~eeA~kkIwlvD~~GLi~~~r~~~l 364 (582)
T KOG1257|consen 285 DIQGTAAVALAGLLAALRITGKPLSDHVILFLGAGEAALGIANLIVMAMVKEGLSEEEARKKIWLVDSKGLITKGRKASL 364 (582)
T ss_pred cccchhHHHHHHHHHHHHHhCCccccceEEEecCchHHhhHHHHHHHHHHHcCCCHHHHhccEEEEecCceeeccccCCC
Confidence 4455554444566667777665 3568999999999999988888777778887 4999999986444443 34
Q ss_pred cccCCCchhhhcccccc
Q 026778 214 QFRSIPSLPCLSNILTI 230 (233)
Q Consensus 214 q~~~~~~~~~~~~~~~~ 230 (233)
+....+++.+.+.++.+
T Consensus 365 ~~~~~~fAk~~~~~~~L 381 (582)
T KOG1257|consen 365 TEEKKPFAKDHEEIKDL 381 (582)
T ss_pred ChhhccccccChHHHHH
Confidence 44455566666665543
No 241
>PRK00124 hypothetical protein; Validated
Probab=20.83 E-value=1.4e+02 Score=24.76 Aligned_cols=31 Identities=13% Similarity=0.156 Sum_probs=25.2
Q ss_pred cCCccchhhHHHHHHHHHHcCCCEEEEEecCCcc
Q 026778 173 GDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWA 206 (233)
Q Consensus 173 GDG~~~~G~~~Ealn~A~~~~lPvvfvv~nN~~a 206 (233)
+|+.- --.|....|..+++|++||+.-|.+-
T Consensus 7 ADACP---Vk~~i~r~a~r~~i~v~~Vas~n~~~ 37 (151)
T PRK00124 7 ADACP---VKDIIIRVAERHGIPVTLVASFNHFL 37 (151)
T ss_pred CCCCc---HHHHHHHHHHHHCCeEEEEEeCCccc
Confidence 45543 55788899999999999999999874
No 242
>cd00617 Tnase_like Tryptophanase family (Tnase). This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to tryptophanase (Tnase) and tyrosine phenol-lyase (TPL). Tnase and TPL are active as tetramers and catalyze beta-elimination reactions. Tnase catalyzes degradation of L-tryptophan to yield indole, pyruvate and ammonia and TPL catalyzes degradation of L-tyrosine to yield phenol, pyruvate and ammonia.
Probab=20.72 E-value=1.4e+02 Score=28.72 Aligned_cols=43 Identities=16% Similarity=0.105 Sum_probs=32.0
Q ss_pred HHhHHHHHHHHHHhcCcccccccCcchHHHHHHHHhccCCCCeEe
Q 026778 47 TLQTMDTIFYEAQRQGRISFYLTTSGEEAINIASAAAIKNDDFVV 91 (233)
Q Consensus 47 ~~R~~d~~~~~l~r~G~i~~~~~~~GqEa~~vg~~~aL~~~D~~~ 91 (233)
-...|++.+.+.+.... ......|.+|..+++.+.++|+|.|.
T Consensus 54 g~~~Leeaia~~~g~~~--vv~t~~Gt~Al~la~~al~~pGD~V~ 96 (431)
T cd00617 54 SFYDLEDAVQDLFGFKH--IIPTHQGRGAENILFSILLKPGRTVP 96 (431)
T ss_pred CHHHHHHHHHHHHCCCe--EEEcCCHHHHHHHHHHHhCCCCCEEc
Confidence 35688888888775533 34566788898888777789999984
No 243
>cd04469 S1_Hex1 S1_Hex1: Hex1, S1-like RNA-binding domain. Hex1 protein is the major component of the Woronin body in filamentous fungi. The Woronin body is a dense vesicle and plays a vital role in filamentous fungi cell integrity. When cell damage occurs, Woronin bodies seal the septal pore to prevent further cytoplasmic bleeding. Hex1 protein self-assembles to form the solid core of the Woronin body vesicle. The Hex1 sequence and structure are similar to eukaryotic initiation factor 5A (eIF5A), suggesting they share a common ancestor during evolution. All members of the EF superfamily to which Hex1 belongs, contain an S1 domain, which has been shown to bind RNA or single-stranded DNA and often interacts with the ribosome.
Probab=20.69 E-value=1.1e+02 Score=22.36 Aligned_cols=48 Identities=17% Similarity=0.167 Sum_probs=29.8
Q ss_pred CeeEEeCCCCCCCCCCCCCCCC-HHHHHHHHHHHHHHhHHHHHHHHHHhcCc---ccccccCcchHHH
Q 026778 13 PCYRVLDDDGQPFPDSSFVKVS-EGVAIKMYNDMVTLQTMDTIFYEAQRQGR---ISFYLTTSGEEAI 76 (233)
Q Consensus 13 ~~~~vl~~~g~~~~~~~~~~~s-~e~l~~lyr~M~~~R~~d~~~~~l~r~G~---i~~~~~~~GqEa~ 76 (233)
..+.+|+++|...++- .++ +.+|- .++.+.+..|+ +-...++.|+|.+
T Consensus 13 G~lsLM~e~G~~kdDl---~lP~~~~l~-------------~~I~~~f~~gk~~v~VtVlsAmGeE~i 64 (75)
T cd04469 13 GSIVAMTETGDVKQGL---PVIDQSNLW-------------TRLKTAFESGRGSVRVLVVNDGGRELV 64 (75)
T ss_pred CeEEEEcCCCCcccCc---cCCCcchHH-------------HHHHHHHHCCCCcEEEEEEccCCeEeE
Confidence 4688999999886542 233 33332 22334445666 3467789999975
No 244
>PRK07064 hypothetical protein; Provisional
Probab=20.46 E-value=1.7e+02 Score=28.34 Aligned_cols=45 Identities=22% Similarity=0.209 Sum_probs=32.2
Q ss_pred hhHHHHHhhhcCCCCeEEEEEcCCccchhhHHHHHHHHHHcCCCEEEEEec
Q 026778 152 AVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRN 202 (233)
Q Consensus 152 A~G~A~a~k~~~~~~vvv~~~GDG~~~~G~~~Ealn~A~~~~lPvvfvv~n 202 (233)
|.|.|. ..++..+++|..|=|.+|- --++-.|..-+.|||+++-+
T Consensus 57 A~gyar---~tg~~~v~~~t~GpG~~N~---~~~i~~A~~~~~Pvl~i~g~ 101 (544)
T PRK07064 57 ADAHAR---VSGGLGVALTSTGTGAGNA---AGALVEALTAGTPLLHITGQ 101 (544)
T ss_pred HHHHHH---hcCCCeEEEeCCCCcHHHH---HHHHHHHHhcCCCEEEEeCC
Confidence 444443 3456678888888888773 35677788889999999853
No 245
>PRK00945 acetyl-CoA decarbonylase/synthase complex subunit epsilon; Provisional
Probab=20.42 E-value=1.4e+02 Score=25.14 Aligned_cols=36 Identities=14% Similarity=0.051 Sum_probs=28.7
Q ss_pred CeEEEEEcCCccc-hhhHHHHHHHHHHcCCCEEEEEe
Q 026778 166 ACAVTYFGDGGTS-EGDFHAALNFSAVTEAPVIFICR 201 (233)
Q Consensus 166 ~vvv~~~GDG~~~-~G~~~Ealn~A~~~~lPvvfvv~ 201 (233)
+.-+.++|.|+.. +....+...+|..+++|++.-..
T Consensus 35 KrPlIivG~ga~~~~ea~e~l~elaEkl~iPVvtT~~ 71 (171)
T PRK00945 35 KRPLLVVGSLLLDDEELLDRAVKIAKKANIPVAATGG 71 (171)
T ss_pred CCcEEEECcCccccchHHHHHHHHHHHHCCCEEEccc
Confidence 3467888999987 66777889999999999985444
No 246
>PRK05441 murQ N-acetylmuramic acid-6-phosphate etherase; Reviewed
Probab=20.07 E-value=2.2e+02 Score=25.86 Aligned_cols=40 Identities=25% Similarity=0.206 Sum_probs=33.2
Q ss_pred CCCCeEEEEEcCCccchhhHHHHHHHHHHcCCCEEEEEecCC
Q 026778 163 RKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNG 204 (233)
Q Consensus 163 ~~~~vvv~~~GDG~~~~G~~~Ealn~A~~~~lPvvfvv~nN~ 204 (233)
.++.+++++-..|.+.+ +.+++..|...+.|+|.++.|.+
T Consensus 130 ~~~DvvI~IS~SG~T~~--vi~al~~Ak~~Ga~tI~IT~~~~ 169 (299)
T PRK05441 130 TAKDVVVGIAASGRTPY--VIGALEYARERGALTIGISCNPG 169 (299)
T ss_pred CCCCEEEEEeCCCCCHH--HHHHHHHHHHCCCeEEEEECCCC
Confidence 45678888888887665 79999999999999999997643
Done!