Query 026778
Match_columns 233
No_of_seqs 153 out of 1657
Neff 6.1
Searched_HMMs 29240
Date Mon Mar 25 21:56:08 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026778.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/026778hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2bfd_A 2-oxoisovalerate dehydr 100.0 3.5E-55 1.2E-59 408.6 23.4 232 1-232 20-253 (400)
2 1qs0_A 2-oxoisovalerate dehydr 100.0 1.1E-52 3.6E-57 392.8 21.0 220 12-232 51-273 (407)
3 2ozl_A PDHE1-A type I, pyruvat 100.0 2.9E-51 9.9E-56 378.3 18.6 202 29-232 27-229 (365)
4 1w85_A Pyruvate dehydrogenase 100.0 6.7E-50 2.3E-54 369.4 20.3 214 10-232 18-233 (368)
5 1umd_A E1-alpha, 2-OXO acid de 100.0 2.7E-48 9.3E-53 358.0 22.5 222 10-232 11-235 (367)
6 2jgd_A 2-oxoglutarate dehydrog 100.0 1.2E-37 4E-42 315.2 12.5 219 11-232 169-422 (933)
7 2yic_A 2-oxoglutarate decarbox 100.0 1.6E-37 5.6E-42 312.4 9.1 216 13-232 91-350 (868)
8 2xt6_A 2-oxoglutarate decarbox 100.0 5.3E-37 1.8E-41 315.1 9.1 216 13-232 336-595 (1113)
9 2o1s_A 1-deoxy-D-xylulose-5-ph 99.9 3.6E-27 1.2E-31 229.8 8.8 185 11-215 4-193 (621)
10 2o1x_A 1-deoxy-D-xylulose-5-ph 99.9 1.9E-25 6.5E-30 218.1 8.0 171 27-214 19-194 (629)
11 3rim_A Transketolase, TK; TPP, 99.8 5E-20 1.7E-24 182.0 12.8 175 47-232 29-237 (700)
12 3mos_A Transketolase, TK; thia 99.8 1.3E-18 4.6E-23 169.6 15.3 189 32-230 4-212 (616)
13 1r9j_A Transketolase; domains, 99.8 8.7E-19 3E-23 172.5 13.4 175 45-230 10-215 (673)
14 1gpu_A Transketolase; transfer 99.8 2.3E-18 8E-23 169.6 11.5 171 45-226 12-209 (680)
15 1itz_A Transketolase; calvin c 99.8 3.3E-18 1.1E-22 168.4 12.4 183 30-226 8-220 (675)
16 3kom_A Transketolase; rossmann 99.7 3.1E-18 1.1E-22 168.4 10.6 173 47-230 12-215 (663)
17 2e6k_A Transketolase; structur 99.7 5.4E-18 1.8E-22 166.2 11.3 171 45-226 12-211 (651)
18 3l84_A Transketolase; TKT, str 99.7 4.4E-18 1.5E-22 166.5 10.4 170 45-226 10-204 (632)
19 3uk1_A Transketolase; structur 99.7 1E-17 3.5E-22 165.9 12.1 176 45-231 49-255 (711)
20 2r8o_A Transketolase 1, TK 1; 99.7 1.5E-17 5E-22 163.6 11.2 171 45-226 8-207 (669)
21 2qtc_A Pyruvate dehydrogenase 99.7 2E-17 6.7E-22 167.1 12.3 178 45-230 82-290 (886)
22 3m49_A Transketolase; alpha-be 99.7 2.7E-17 9.1E-22 162.4 11.3 174 47-231 36-240 (690)
23 3ahc_A Phosphoketolase, xylulo 99.1 1.8E-11 6E-16 122.8 4.0 97 127-227 159-260 (845)
24 4feg_A Pyruvate oxidase; carba 98.9 4.8E-10 1.7E-14 108.4 3.7 60 142-207 419-479 (603)
25 2vk8_A Pyruvate decarboxylase 98.9 3.9E-10 1.3E-14 107.8 2.0 68 141-210 411-479 (563)
26 1q6z_A BFD, BFDC, benzoylforma 98.8 1.4E-09 4.9E-14 103.1 1.8 63 143-211 401-464 (528)
27 2uz1_A Benzaldehyde lyase; thi 98.7 3E-09 1E-13 101.8 2.8 66 141-210 417-483 (563)
28 2pan_A Glyoxylate carboligase; 98.7 3.4E-09 1.2E-13 102.5 2.6 64 141-210 440-504 (616)
29 1v5e_A Pyruvate oxidase; oxido 98.7 4.8E-09 1.6E-13 101.2 3.6 65 141-211 411-476 (590)
30 1ozh_A ALS, acetolactate synth 98.7 5.7E-09 2E-13 100.1 2.8 64 141-210 418-482 (566)
31 2iht_A Carboxyethylarginine sy 98.6 6.4E-09 2.2E-13 99.8 2.2 64 141-210 434-498 (573)
32 1ovm_A Indole-3-pyruvate decar 98.6 6.4E-09 2.2E-13 99.1 2.0 64 141-210 406-470 (552)
33 1ybh_A Acetolactate synthase, 98.6 9.3E-09 3.2E-13 99.0 3.0 63 141-209 424-487 (590)
34 2vbf_A Branched-chain alpha-ke 98.6 1.1E-08 3.7E-13 98.0 3.3 65 140-210 422-487 (570)
35 2vbi_A Pyruvate decarboxylase; 98.6 9.8E-09 3.4E-13 98.2 2.8 66 141-212 407-473 (566)
36 2pgn_A Cyclohexane-1,2-dione h 98.6 8.8E-09 3E-13 99.2 2.5 65 141-211 422-487 (589)
37 2wvg_A PDC, pyruvate decarboxy 98.6 1.5E-08 5E-13 97.1 3.2 66 141-212 411-477 (568)
38 1t9b_A Acetolactate synthase, 98.5 2.1E-08 7.1E-13 98.6 2.7 64 141-210 511-575 (677)
39 2nxw_A Phenyl-3-pyruvate decar 98.5 2E-08 6.8E-13 96.3 1.7 63 142-210 421-484 (565)
40 3eya_A Pyruvate dehydrogenase 98.4 6.8E-08 2.3E-12 92.2 3.4 63 141-209 404-467 (549)
41 2x7j_A 2-succinyl-5-enolpyruvy 98.4 6.4E-08 2.2E-12 93.5 3.1 62 142-210 454-516 (604)
42 2c31_A Oxalyl-COA decarboxylas 98.4 7.1E-08 2.4E-12 92.3 2.8 58 140-204 423-480 (568)
43 2q28_A Oxalyl-COA decarboxylas 98.4 1.1E-07 3.8E-12 90.8 2.7 61 140-207 418-480 (564)
44 3hww_A 2-succinyl-5-enolpyruvy 98.2 2.6E-07 9E-12 88.3 2.1 61 141-209 415-476 (556)
45 3lq1_A 2-succinyl-5-enolpyruvy 98.1 7.8E-07 2.7E-11 85.4 1.7 57 145-209 438-495 (578)
46 2c42_A Pyruvate-ferredoxin oxi 94.0 0.025 8.5E-07 59.2 3.1 42 165-208 953-996 (1231)
47 3mos_A Transketolase, TK; thia 78.1 4.3 0.00015 39.2 7.0 75 152-232 367-443 (616)
48 1itz_A Transketolase; calvin c 70.2 8.5 0.00029 37.5 6.9 74 153-232 427-503 (675)
49 2e6k_A Transketolase; structur 69.9 6.2 0.00021 38.2 5.9 73 150-232 411-485 (651)
50 2r8o_A Transketolase 1, TK 1; 65.7 11 0.00039 36.5 6.8 73 150-232 416-490 (669)
51 2o1s_A 1-deoxy-D-xylulose-5-ph 63.8 12 0.00042 35.8 6.5 73 150-232 375-448 (621)
52 1gpu_A Transketolase; transfer 60.4 12 0.00041 36.5 5.8 48 182-232 449-498 (680)
53 1r9j_A Transketolase; domains, 57.6 18 0.00062 35.2 6.6 72 151-232 417-490 (673)
54 2ozl_B PDHE1-B, pyruvate dehyd 55.5 7.1 0.00024 34.7 3.1 71 149-232 75-156 (341)
55 3ibs_A Conserved hypothetical 51.7 17 0.00059 28.7 4.6 36 165-200 111-146 (218)
56 2o1x_A 1-deoxy-D-xylulose-5-ph 51.7 15 0.00051 35.3 4.8 73 150-232 378-451 (629)
57 3kom_A Transketolase; rossmann 51.1 32 0.0011 33.4 7.1 74 149-232 416-491 (663)
58 3l84_A Transketolase; TKT, str 47.9 35 0.0012 33.0 6.8 74 149-232 395-470 (632)
59 2x5n_A SPRPN10, 26S proteasome 43.9 27 0.00091 28.2 4.5 35 166-200 108-142 (192)
60 1w85_B Pyruvate dehydrogenase 39.7 20 0.00068 31.3 3.3 72 149-232 63-144 (324)
61 3m49_A Transketolase; alpha-be 38.9 48 0.0016 32.4 6.2 47 183-232 467-515 (690)
62 1ik6_A Pyruvate dehydrogenase; 38.4 38 0.0013 30.3 5.1 72 149-232 111-192 (369)
63 1umd_B E1-beta, 2-OXO acid deh 34.6 28 0.00097 30.3 3.5 72 149-232 64-145 (324)
64 3cf4_G Acetyl-COA decarboxylas 33.2 44 0.0015 26.2 4.2 33 166-198 35-67 (170)
65 3uk1_A Transketolase; structur 31.2 95 0.0032 30.4 6.9 74 149-232 461-536 (711)
66 1n3y_A Integrin alpha-X; alpha 31.2 77 0.0026 24.3 5.3 36 165-200 110-147 (198)
67 2fwh_A Thiol:disulfide interch 30.4 63 0.0021 23.4 4.4 35 10-44 90-125 (134)
68 2xgg_A Microneme protein 2; A/ 27.4 1.3E+02 0.0044 22.9 6.0 36 165-200 122-158 (178)
69 3rim_A Transketolase, TK; TPP, 27.0 1.2E+02 0.0042 29.6 6.9 47 183-232 472-520 (700)
70 2bfd_B 2-oxoisovalerate dehydr 26.8 43 0.0015 29.4 3.4 72 149-232 80-162 (342)
71 1yd7_A 2-keto acid:ferredoxin 26.2 27 0.00092 31.5 1.9 49 152-204 76-124 (395)
72 1qs0_B 2-oxoisovalerate dehydr 23.6 47 0.0016 29.0 2.9 73 148-232 64-146 (338)
73 2b2x_A Integrin alpha-1; compu 23.5 1.3E+02 0.0046 23.7 5.6 35 165-199 124-159 (223)
74 1pt6_A Integrin alpha-1; cell 23.4 1.4E+02 0.0049 23.3 5.7 35 165-199 109-144 (213)
75 1m3s_A Hypothetical protein YC 22.9 1.3E+02 0.0045 23.0 5.2 40 162-203 77-116 (186)
76 3geb_A EYES absent homolog 2; 22.1 76 0.0026 27.6 3.8 28 165-199 229-256 (274)
77 1jeo_A MJ1247, hypothetical pr 22.0 1.7E+02 0.0059 22.2 5.8 41 162-204 80-120 (180)
78 2hc5_A ORF 99, hypothetical pr 22.0 14 0.00049 28.1 -0.7 32 10-46 66-98 (117)
79 1shu_X Anthrax toxin receptor 21.5 1.6E+02 0.0055 22.0 5.4 36 164-199 102-140 (182)
80 3etn_A Putative phosphosugar i 21.3 1.6E+02 0.0055 23.7 5.6 41 162-204 104-146 (220)
81 3nyt_A Aminotransferase WBPE; 21.2 1.3E+02 0.0045 25.4 5.3 44 48-93 37-81 (367)
82 1sen_A Thioredoxin-like protei 21.0 1.7E+02 0.0056 22.1 5.4 36 10-45 102-146 (164)
83 1zzo_A RV1677; thioredoxin fol 20.9 57 0.0019 22.8 2.5 34 10-45 100-133 (136)
84 2i2w_A Phosphoheptose isomeras 20.4 1.6E+02 0.0054 23.4 5.4 41 162-204 129-169 (212)
85 2a2p_A Selenoprotein M, SELM p 20.4 65 0.0022 25.0 2.8 33 12-44 56-88 (129)
86 2lja_A Putative thiol-disulfid 20.3 80 0.0027 22.8 3.3 35 10-45 107-141 (152)
87 2xbl_A Phosphoheptose isomeras 20.2 1.6E+02 0.0056 22.6 5.3 41 162-204 114-154 (198)
88 1lu4_A Soluble secreted antige 20.0 64 0.0022 22.6 2.6 34 10-45 98-134 (136)
89 2xhz_A KDSD, YRBH, arabinose 5 20.0 1.5E+02 0.005 22.6 4.9 41 162-204 94-134 (183)
No 1
>2bfd_A 2-oxoisovalerate dehydrogenase alpha subunit; oxidoreductase, multi-enzyme complex, acylation, oxidative decarboxylation, maple syrup urine disease; HET: TDP; 1.39A {Homo sapiens} SCOP: c.36.1.11 PDB: 1v16_A* 2bfc_A* 1v1r_A* 1olu_A* 2bfb_A* 1v1m_A* 2bew_A* 1dtw_A* 1olx_A* 1ols_A* 1wci_A* 1x80_A* 2beu_A* 1u5b_A* 2bev_A* 1v11_A* 1x7x_A* 1x7y_A* 1x7w_A* 1x7z_A* ...
Probab=100.00 E-value=3.5e-55 Score=408.63 Aligned_cols=232 Identities=48% Similarity=0.823 Sum_probs=219.6
Q ss_pred CccccCCCCCCCCeeEEeCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHhHHHHHHHHHHhcCcccccccCcchHHHHHHH
Q 026778 1 MRFISESSEERIPCYRVLDDDGQPFPDSSFVKVSEGVAIKMYNDMVTLQTMDTIFYEAQRQGRISFYLTTSGEEAINIAS 80 (233)
Q Consensus 1 ~~~~~~~~~~~~~~~~vl~~~g~~~~~~~~~~~s~e~l~~lyr~M~~~R~~d~~~~~l~r~G~i~~~~~~~GqEa~~vg~ 80 (233)
|+|++++.+..+|++||||+||+++++...+.+++|+++++||.|+++|.||+++..+++||+++|++++.||||+++|+
T Consensus 20 ~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~e~~~~~y~~M~~~r~fe~~~~~~~~~gri~~~~~~~GqEa~~vg~ 99 (400)
T 2bfd_A 20 LEFIQPNVISGIPIYRVMDRQGQIINPSEDPHLPKEKVLKLYKSMTLLNTMDRILYESQRQGRISFYMTNYGEEGTHVGS 99 (400)
T ss_dssp CCCCCCCCSSCSCEECSBCTTSCBSCGGGCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSSCCCCCTTCHHHHHHH
T ss_pred eeeccCcccCCCCeeEEECCCCCCCCccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcceeecCCChHHHHHHH
Confidence 68999988889999999999999988755678999999999999999999999999999999999999999999999999
Q ss_pred HhccCCCCeEecCCccchhhhhcCCCHHHHHHHHhcCCCCCCCCCCCCcccCCCccccccccccCCCCchhhhHHHHHhh
Q 026778 81 AAAIKNDDFVVPQYREPGVLLWRGFSMQEFANQCFGNKADYGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALK 160 (233)
Q Consensus 81 ~~aL~~~D~~~~~yR~~~~~l~rG~~~~~~l~e~~g~~~g~~~Gr~~~~H~~~~~~~~~~~~g~lG~~~~~A~G~A~a~k 160 (233)
+.+|+++|+++++||+|++++.+|++++++|++++|+.+++++|+++++|+++++.++.+.+|++|.++|.|+|+|+|.+
T Consensus 100 ~~al~~~D~v~~~yR~~~~~~~~G~~~~~~l~e~~g~~~g~~~G~~~~~H~~~~~~~~~~~~g~lG~~lp~AvG~AlA~~ 179 (400)
T 2bfd_A 100 AAALDNTDLVFGQAREAGVLMYRDYPLELFMAQCYGNISDLGKGRQMPVHYGCKERHFVTISSPLATQIPQAVGAAYAAK 179 (400)
T ss_dssp HHTSCTTSEEECCSCCHHHHHHTTCCHHHHHHHHHTCTTCTTTTCSCSSCCCBTTTTBCCCCSSTTTHHHHHHHHHHHHH
T ss_pred HHhcCCCCEEEecCcCHHHHHHcCCCHHHHHHHhcCCCCCCCCCCCCCcCCcccccCccccCccccccccHHHHHHHhhh
Confidence 99999999999999999999999999999999999999999999999999998888999999999999999999999999
Q ss_pred hcCCCCeEEEEEcCCccchhhHHHHHHHHHHcCCCEEEEEecCCccccccccccccCCCchhhhc--ccccccc
Q 026778 161 MDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSIPSLPCLS--NILTILL 232 (233)
Q Consensus 161 ~~~~~~vvv~~~GDG~~~~G~~~Ealn~A~~~~lPvvfvv~nN~~ais~~~~~q~~~~~~~~~~~--~~~~~~~ 232 (233)
+++++++++|++|||++++|.|||+||+|+.|+||+||||+||+|+|+++...++...+++++.. +||.++|
T Consensus 180 ~~~~~~~vv~~~GDGa~~~G~~~Eal~~A~~~~lpvi~vv~NN~~~i~~~~~~~~~~~d~~~~a~a~G~~~~~V 253 (400)
T 2bfd_A 180 RANANRVVICYFGEGAASEGDAHAGFNFAATLECPIIFFCRNNGYAISTPTSEQYRGDGIAARGPGYGIMSIRV 253 (400)
T ss_dssp HHTCCCCEEEEEETTGGGSHHHHHHHHHHHHTTCCEEEEEEECSEETTEEGGGTCSSSTTGGGTGGGTCEEEEE
T ss_pred hhCCCCeEEEEECchhhhcChHHHHHHHHHHHCcCEEEEEECCceeeeecccccCCCCCHHHHHHHcCCcEEEE
Confidence 99999999999999999999999999999999999999999999999999999988888877654 4666654
No 2
>1qs0_A 2-oxoisovalerate dehydrogenase alpha-subunit; heterotetramer, THDP cofactor, oxidoreductase; HET: TDP; 2.40A {Pseudomonas putida} SCOP: c.36.1.11 PDB: 2bp7_A
Probab=100.00 E-value=1.1e-52 Score=392.76 Aligned_cols=220 Identities=35% Similarity=0.481 Sum_probs=207.5
Q ss_pred CCeeEEeCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHhHHHHHHHHHHhcCcccccccCcchHHHHHHHHhccCCCCeEe
Q 026778 12 IPCYRVLDDDGQPFPDSSFVKVSEGVAIKMYNDMVTLQTMDTIFYEAQRQGRISFYLTTSGEEAINIASAAAIKNDDFVV 91 (233)
Q Consensus 12 ~~~~~vl~~~g~~~~~~~~~~~s~e~l~~lyr~M~~~R~~d~~~~~l~r~G~i~~~~~~~GqEa~~vg~~~aL~~~D~~~ 91 (233)
+|++||||++|+++++ ..+.+++|+++++||.|+++|.||+++..+++||+++|++++.||||+++|++.+|+++||++
T Consensus 51 ~~~~~~ld~~g~~~~~-~~~~~~~e~~~~~y~~M~~~R~fe~~~~~~~~qgr~~~~~~~~GqEA~~vg~~~al~~~D~v~ 129 (407)
T 1qs0_A 51 YSLVRVLDEQGDAQGP-WAEDIDPQILRQGMRAMLKTRIFDSRMVVAQRQKKMSFYMQSLGEEAIGSGQALALNRTDMCF 129 (407)
T ss_dssp TSCBCCBCTTSCBCSG-GGSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSSCCCCCTTTHHHHHHHHHHSCTTSEEE
T ss_pred CCeEEEECCCCCCCCc-CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccCcCCCChHHHHHHHHHhcCCCCEEE
Confidence 5889999999999876 357899999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCccchhhhhcCCCHHHHHHHHhcCCCCCCCCCCCCcccCCCccccccccccCCCCchhhhHHHHHhhhcCCCCeEEEE
Q 026778 92 PQYREPGVLLWRGFSMQEFANQCFGNKADYGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTY 171 (233)
Q Consensus 92 ~~yR~~~~~l~rG~~~~~~l~e~~g~~~g~~~Gr~~~~H~~~~~~~~~~~~g~lG~~~~~A~G~A~a~k~~~~~~vvv~~ 171 (233)
++||+|+++|++|+++.++|+|++|+.++.++|+++++|+++++.++++.+|++|.++|+|+|+|+|.|+++.+++++|+
T Consensus 130 ~~yR~~~~~l~~g~~~~~i~~el~g~~~~~~~G~g~~~h~~~~~~~~~~~~g~lG~~lp~AvGaA~A~k~~~~~~~vv~i 209 (407)
T 1qs0_A 130 PTYRQQSILMARDVSLVEMICQLLSNERDPLKGRQLPIMYSVREAGFFTISGNLATQFVQAVGWAMASAIKGDTKIASAW 209 (407)
T ss_dssp CCSSCHHHHHHTTCCHHHHHHHHHTCTTCTTTTCSCTTCCCBGGGTBCCCCSSSSHHHHHHHHHHHHHHHTTCCCCEEEE
T ss_pred ecccchHHHHhcCCCHHHHHHHHhCCCCCCCCCCCceeecchhccCccccccccccchhHHHHHHHHHHHhCCCCEEEEE
Confidence 99999999999999999999999999999999999999999988999999999999999999999999999999999999
Q ss_pred EcCCccchhhHHHHHHHHHHcCCCEEEEEecCCccccccccccc-cCCCchhhh--cccccccc
Q 026778 172 FGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQF-RSIPSLPCL--SNILTILL 232 (233)
Q Consensus 172 ~GDG~~~~G~~~Ealn~A~~~~lPvvfvv~nN~~ais~~~~~q~-~~~~~~~~~--~~~~~~~~ 232 (233)
+|||++++|.|||+||+|+.|+||+||||+||+|+|+++...++ ...+++++. .++|.++|
T Consensus 210 ~GDGa~~~G~~~Eal~~A~~~~lpvi~Vv~NN~~gi~~~~~~~~~~~~d~a~~a~a~G~~~~~V 273 (407)
T 1qs0_A 210 IGDGATAESDFHTALTFAHVYRAPVILNVVNNQWAISTFQAIAGGESTTFAGRGVGCGIASLRV 273 (407)
T ss_dssp EETGGGGSHHHHHHHHHHHHHTCCEEEEEEECSEETTEEGGGGTTTTCCSTHHHHHTTCEEEEE
T ss_pred ECCchhhcChHHHHHHHHHHHCcCEEEEEECCCcceeeccccccCCCCCHHHHHHHcCCeEEEE
Confidence 99999999999999999999999999999999999999988777 567786654 46777654
No 3
>2ozl_A PDHE1-A type I, pyruvate dehydrogenase E1 component alpha subunit, somatic form; pyruvate_dehydrogenase_complex, human, multienzyme_complex_component; HET: TPP; 1.90A {Homo sapiens} SCOP: c.36.1.11 PDB: 1ni4_A* 3exe_A* 3exi_A 3exh_A* 3exg_A 3exf_A*
Probab=100.00 E-value=2.9e-51 Score=378.31 Aligned_cols=202 Identities=26% Similarity=0.415 Sum_probs=192.7
Q ss_pred CCCCCCHHHHHHHHHHHHHHhHHHHHHHHHHhcCcc-cccccCcchHHHHHHHHhccCCCCeEecCCccchhhhhcCCCH
Q 026778 29 SFVKVSEGVAIKMYNDMVTLQTMDTIFYEAQRQGRI-SFYLTTSGEEAINIASAAAIKNDDFVVPQYREPGVLLWRGFSM 107 (233)
Q Consensus 29 ~~~~~s~e~l~~lyr~M~~~R~~d~~~~~l~r~G~i-~~~~~~~GqEa~~vg~~~aL~~~D~~~~~yR~~~~~l~rG~~~ 107 (233)
+.+.+|+|+++++||.|+++|.||+++..++|||++ +|+|++.||||+++|++.+|+++||++++||+|++++++|+|+
T Consensus 27 ~~~~l~~e~l~~~yr~M~~~R~~e~~~~~l~~~g~i~gf~~~~~GqEa~~vg~~~al~~~D~i~~~yR~~~~~~~~G~~~ 106 (365)
T 2ozl_A 27 VTTVLTREDGLKYYRMMQTVRRMELKADQLYKQKIIRGFCHLCDGQEACCVGLEAGINPTDHLITAYRAHGFTFTRGLSV 106 (365)
T ss_dssp SEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCSCCCCCTTCHHHHHHHHHTSCTTSEEECCSCCHHHHHHTTCCH
T ss_pred ccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccccccCCCChHHHHHHHHHhhCCCCEEehHHHHHHHHHhcCCCH
Confidence 456799999999999999999999999999999999 7999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCCCCCCCCCCcccCCCccccccccccCCCCchhhhHHHHHhhhcCCCCeEEEEEcCCccchhhHHHHHH
Q 026778 108 QEFANQCFGNKADYGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALN 187 (233)
Q Consensus 108 ~~~l~e~~g~~~g~~~Gr~~~~H~~~~~~~~~~~~g~lG~~~~~A~G~A~a~k~~~~~~vvv~~~GDG~~~~G~~~Ealn 187 (233)
.++|+|++|+.+|+++|++|++|+.+ .++++.+|++|.++|+|+|+|+|.++++.++++||++|||++++|.|||+||
T Consensus 107 ~~i~~e~~g~~~g~~~g~gg~~H~~~--~~~~~~~g~~G~~lp~A~G~A~A~~~~~~~~~vv~~~GDGa~~~G~~~Ealn 184 (365)
T 2ozl_A 107 REILAELTGRKGGCAKGKGGSMHMYA--KNFYGGNGIVGAQVPLGAGIALACKYNGKDEVCLTLYGDGAANQGQIFEAYN 184 (365)
T ss_dssp HHHHHHHTTCTTSTTTTSSCTTCCCB--TTBCCCCCSTTTHHHHHHHHHHHHHHHTCCCCEEEEEETTGGGCHHHHHHHH
T ss_pred HHHHHHHcCCCCCCCCCCCCCCCcCc--cccCCCcchhhhhhHHHHHHHHHHHhcCCCceEEEEECchhhhccHHHHHHH
Confidence 99999999999999999999999854 4888899999999999999999999999999999999999999999999999
Q ss_pred HHHHcCCCEEEEEecCCccccccccccccCCCchhhhcccccccc
Q 026778 188 FSAVTEAPVIFICRNNGWAISTPISDQFRSIPSLPCLSNILTILL 232 (233)
Q Consensus 188 ~A~~~~lPvvfvv~nN~~ais~~~~~q~~~~~~~~~~~~~~~~~~ 232 (233)
+|+.|++|+||||+||+|+|+++...++...+++.|-.++|+++|
T Consensus 185 ~A~~~~lpvi~vv~NN~~g~~t~~~~~~~~~~~~~ra~g~p~~~V 229 (365)
T 2ozl_A 185 MAALWKLPCIFICENNRYGMGTSVERAAASTDYYKRGDFIPGLRV 229 (365)
T ss_dssp HHHHTTCCEEEEEEECSEETTEEHHHHCSCCCGGGTTTTSCEEEE
T ss_pred HHHHHCcCEEEEEECCCcccCCCcccccCCCCHHHHhCCCCEEEE
Confidence 999999999999999999999998888888889888888888765
No 4
>1w85_A Pyruvate dehydrogenase E1 component, alpha subunit; dehydrogenase, multienzyme complex, oxidoreductase; HET: TDP; 2.0A {Geobacillus stearothermophilus} SCOP: c.36.1.11 PDB: 3duf_A* 3dv0_A* 3dva_A* 1w88_A*
Probab=100.00 E-value=6.7e-50 Score=369.41 Aligned_cols=214 Identities=33% Similarity=0.552 Sum_probs=197.8
Q ss_pred CCCCeeEEeCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHhHHHHHHHHHHhcCcccccccCcchHHHHHHHHhccCCCCe
Q 026778 10 ERIPCYRVLDDDGQPFPDSSFVKVSEGVAIKMYNDMVTLQTMDTIFYEAQRQGRISFYLTTSGEEAINIASAAAIKNDDF 89 (233)
Q Consensus 10 ~~~~~~~vl~~~g~~~~~~~~~~~s~e~l~~lyr~M~~~R~~d~~~~~l~r~G~i~~~~~~~GqEa~~vg~~~aL~~~D~ 89 (233)
..+|++||||+||+++++...+.+|+|+++++||.|+++|.||+++..+++||+++|||++.||||+++|++.+|+++|+
T Consensus 18 ~~~~~~~~l~~~g~~~~~~~~~~l~~e~l~~~y~~M~~~R~fe~~~~~~~~qgr~g~~~~~~G~Ea~~vg~~~~l~~~D~ 97 (368)
T 1w85_A 18 EQFPTFQILNEEGEVVNEEAMPELSDEQLKELMRRMVYTRILDQRSISLNRQGRLGFYAPTAGQEASQIASHFALEKEDF 97 (368)
T ss_dssp HTCCEECSBCTTSCBSCGGGCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCSCCCCTTCHHHHHHHHHTCCTTCE
T ss_pred CCCCeeEEECCCCCCCCccccCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhCCccccCCCCCCHHHHHHHHHHhcCCcCE
Confidence 45789999999999987655578999999999999999999999999999999999999999999999999999999999
Q ss_pred EecCCccchhhhhcCCCHHHHHHHHhcCCCCCCCCCCCCcccCCCccccccccccCCCCchhhhHHHHHhhhcCCCCeEE
Q 026778 90 VVPQYREPGVLLWRGFSMQEFANQCFGNKADYGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRKDACAV 169 (233)
Q Consensus 90 ~~~~yR~~~~~l~rG~~~~~~l~e~~g~~~g~~~Gr~~~~H~~~~~~~~~~~~g~lG~~~~~A~G~A~a~k~~~~~~vvv 169 (233)
++++||+|++++++|.++.++|++++|+.+ |+ ++| ++.++.+.+|++|.++|.|+|+|+|.++++.+++++
T Consensus 98 v~~~~R~~~~~~~~G~~~~~~~~el~G~~~----G~--~~h---~~~~~~~~~g~lG~~lp~AvG~A~A~~~~~~~~~vv 168 (368)
T 1w85_A 98 ILPGYRDVPQIIWHGLPLYQAFLFSRGHFH----GN--QIP---EGVNVLPPQIIIGAQYIQAAGVALGLKMRGKKAVAI 168 (368)
T ss_dssp EECCSSCHHHHHHTTCCHHHHHHHHHTCGG----GG--CCC---TTCCBCCCCCSTTHHHHHHHHHHHHHHHTTCSCCEE
T ss_pred EEecchhHHHHHhcCCCHHHHHHHHCCCCC----CC--CCC---cccccCCCccccCccccHHHHHHHHhHhhCCCCeEE
Confidence 999999999999999999999999999875 33 345 567899999999999999999999999999999999
Q ss_pred EEEcCCccchhhHHHHHHHHHHcCCCEEEEEecCCccccccccccccCCCchhhh--cccccccc
Q 026778 170 TYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSIPSLPCL--SNILTILL 232 (233)
Q Consensus 170 ~~~GDG~~~~G~~~Ealn~A~~~~lPvvfvv~nN~~ais~~~~~q~~~~~~~~~~--~~~~~~~~ 232 (233)
|++|||++++|.+||+||+|+.|+||+||||+||+|+|+++...+++..+++++. .++|+++|
T Consensus 169 ~i~GDGa~~~G~~~Eal~~A~~~~lpvi~vv~NN~~gi~~~~~~~~~~~d~~~~a~a~G~~~~~V 233 (368)
T 1w85_A 169 TYTGDGGTSQGDFYEGINFAGAFKAPAIFVVQNNRFAISTPVEKQTVAKTLAQKAVAAGIPGIQV 233 (368)
T ss_dssp EEEETGGGGSHHHHHHHHHHHHTTCCEEEEEEECSEETTEEGGGTCSCSCSGGGGGGTTCCEEEE
T ss_pred EEEchhhhhhcHHHHHHHHHHHHCcCEEEEEEcCCccceeccccccCCCCHHHHHHHCCCCEEEE
Confidence 9999999999999999999999999999999999999999999888878887655 45777654
No 5
>1umd_A E1-alpha, 2-OXO acid dehydrogenase alpha subunit; alpha(2)beta(2) tetramer, structural genomics; HET: TDP; 1.90A {Thermus thermophilus} SCOP: c.36.1.11 PDB: 1um9_A* 1umc_A* 1umb_A*
Probab=100.00 E-value=2.7e-48 Score=358.00 Aligned_cols=222 Identities=37% Similarity=0.540 Sum_probs=208.7
Q ss_pred CCCCeeEEeCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHhHHHHHHHHHHhcCcccccccCcchHHHHHHHHhccCCC-C
Q 026778 10 ERIPCYRVLDDDGQPFPDSSFVKVSEGVAIKMYNDMVTLQTMDTIFYEAQRQGRISFYLTTSGEEAINIASAAAIKND-D 88 (233)
Q Consensus 10 ~~~~~~~vl~~~g~~~~~~~~~~~s~e~l~~lyr~M~~~R~~d~~~~~l~r~G~i~~~~~~~GqEa~~vg~~~aL~~~-D 88 (233)
..+|++||||+||+++++ ..+.+|+++++++|+.|+++|.||+++..++++|++++++++.|||+++++.+.+++++ |
T Consensus 11 ~~~~~~~~l~~~g~~~~~-~~~~l~~~~l~~l~~~m~~~R~~~~~~~~~~~~G~~g~~~~~~G~ea~~~~~~~~l~~~rD 89 (367)
T 1umd_A 11 FTEEPIRLIGEEGEWLGD-FPLDLEGEKLRRLYRDMLAARMLDERYTILIRTGKTSFIAPAAGHEAAQVAIAHAIRPGFD 89 (367)
T ss_dssp SCSSCBCCBCTTSCBCCS-SCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCSCCCCCTTCHHHHHHHHHHSCTTTS
T ss_pred CCCCeEEEECCCCCCCCc-cCCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhCCCccCCCCCcCHHHHHHHHHHHcCCCCc
Confidence 467899999999999877 45789999999999999999999999999999999999999999999999999999998 9
Q ss_pred eEecCCccchhhhhcCCCHHHHHHHHhcCCCCCCCCCCCCcccCCCccccccccccCCCCchhhhHHHHHhhhcCCCCeE
Q 026778 89 FVVPQYREPGVLLWRGFSMQEFANQCFGNKADYGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRKDACA 168 (233)
Q Consensus 89 ~~~~~yR~~~~~l~rG~~~~~~l~e~~g~~~g~~~Gr~~~~H~~~~~~~~~~~~g~lG~~~~~A~G~A~a~k~~~~~~vv 168 (233)
+++++||+|++++.+|.++.++|++++|+.+|+++|+++++|+++++.++.+.++++|+++|.|+|+|+|.|+.+.++++
T Consensus 90 ~i~~s~r~~~~~~~~G~~~~~~l~~~~g~~~g~~~G~~~~~h~~~~~~~~~~~~g~lG~~l~~a~G~A~a~k~~~~~~~v 169 (367)
T 1umd_A 90 WVFPYYRDHGLALALGIPLKELLGQMLATKADPNKGRQMPEHPGSKALNFFTVASPIASHVPPAAGAAISMKLLRTGQVA 169 (367)
T ss_dssp EEECCTTTHHHHHHHTCCHHHHHHHHHTBTTCTTTTCSCSSCCCBTTTTBCCCCSSTTTTHHHHHHHHHHHHHTTCCCCE
T ss_pred EEEeCcHHHHHHHHcCCCHHHHHHHHhCCCCCCCCCCCCCCCCcccccCcCCCCchhhhhhhHHHHHHHHHHHhCCCCeE
Confidence 99999999999999999999999999999999999999999998888999999999999999999999999999999999
Q ss_pred EEEEcCCccchhhHHHHHHHHHHcCCCEEEEEecCCccccccccccccCCCchhhhc--ccccccc
Q 026778 169 VTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQFRSIPSLPCLS--NILTILL 232 (233)
Q Consensus 169 v~~~GDG~~~~G~~~Ealn~A~~~~lPvvfvv~nN~~ais~~~~~q~~~~~~~~~~~--~~~~~~~ 232 (233)
+|++|||++++|.+|||||+|+.|++|+||||+||+|+|+++...+++..+++++.. ++|.+.|
T Consensus 170 v~i~GDGa~~~G~~~Eal~~A~~~~lpvi~vv~NN~~gi~~~~~~~~~~~d~~~~a~a~G~~~~~V 235 (367)
T 1umd_A 170 VCTFGDGATSEGDWYAGINFAAVQGAPAVFIAENNFYAISVDYRHQTHSPTIADKAHAFGIPGYLV 235 (367)
T ss_dssp EEEEETGGGGSHHHHHHHHHHHHTTCSEEEEEEECSEETTEEHHHHCSSSCSGGGGGGTTSCEEEE
T ss_pred EEEEcccccccCcHHHHHHHHHHhCcCEEEEEecCCeeeccChhhccCCCCHHHHHHHcCCcEEEe
Confidence 999999999999999999999999999999999999999999888887788877664 4665543
No 6
>2jgd_A 2-oxoglutarate dehydrogenase E1 component; flavoprotein, oxidoreductase, thiamine diphosphate, thiamine pyrophosphate, adenosine monophosphate; HET: AMP; 2.6A {Escherichia coli} PDB: 2jgd_B*
Probab=100.00 E-value=1.2e-37 Score=315.24 Aligned_cols=219 Identities=12% Similarity=0.094 Sum_probs=171.8
Q ss_pred CCCeeEEeCCCCC-CCCCC---CCCCCCHHHHHHHHHHHHHHhHHHHHHHHHHhcCcccccccCcchHHHHHHHHhccC-
Q 026778 11 RIPCYRVLDDDGQ-PFPDS---SFVKVSEGVAIKMYNDMVTLQTMDTIFYEAQRQGRISFYLTTSGEEAINIASAAAIK- 85 (233)
Q Consensus 11 ~~~~~~vl~~~g~-~~~~~---~~~~~s~e~l~~lyr~M~~~R~~d~~~~~l~r~G~i~~~~~~~GqEa~~vg~~~aL~- 85 (233)
.++..+++|++++ ++.+. ..+.+|+|+++++||+|+++|.||+++..++++|+ .+++.||||+++|+..+++
T Consensus 169 g~e~~~i~~~~~~~w~~~~~e~~~~~~s~e~~~~~y~~m~~~r~fE~~l~~~~~~gk---rf~~~G~Ea~i~g~~~~~~~ 245 (933)
T 2jgd_A 169 GAEYMHITSTEEKRWIQQRIESGRATFNSEEKKRFLSELTAAEGLERYLGAKFPGAK---RFSLEGGDALIPMLKEMIRH 245 (933)
T ss_dssp EEECSSCCCHHHHHHHHHHHCC-CCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCC-----CCCCTTCTTHHHHHHHHHHH
T ss_pred cceeeecCCHHHhHHHHHHhhccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCC---cccCCCchHHHHHHHHHHHH
Confidence 3467788898886 33210 13679999999999999999999999999999988 3457999999999776665
Q ss_pred -----CCCeEec-CCccchhhhh--cCCCHHHHHHHHhcCCCCCCCCCCCCcccCCCccc----------cccccccCCC
Q 026778 86 -----NDDFVVP-QYREPGVLLW--RGFSMQEFANQCFGNKADYGKGRQMPIHYGSNKHN----------YFTVSSTIAT 147 (233)
Q Consensus 86 -----~~D~~~~-~yR~~~~~l~--rG~~~~~~l~e~~g~~~g~~~Gr~~~~H~~~~~~~----------~~~~~g~lG~ 147 (233)
++||+++ +||+|++.|+ +|.|+.++|+|++|+.++.++|+++++|++....+ +.+.++++|+
T Consensus 246 a~~~g~~D~v~g~~hRg~~~~Lan~~G~~~~~i~~e~~G~~~g~~g~gdv~~Hlg~~~~~~~~gg~~~l~l~~~~shlg~ 325 (933)
T 2jgd_A 246 AGNSGTREVVLGMAHRGRLNVLVNVLGKKPQDLFDEFAGKHKEHLGTGDVKYHMGFSSDFQTDGGLVHLALAFNPSHLEI 325 (933)
T ss_dssp HHTTTCCEEEEECCSTTHHHHHHHTTCCCHHHHHHHHHTCC--CCSCCCCGGGCCEEEEEEETTEEEEEEECCCCSSTTC
T ss_pred HhhCCCCCEEecCCCcCHHHHHHHHhCCCHHHHHHHhcCCCCCCCCCCCccccCCcccccccCCCceEEeecccCccccc
Confidence 6999996 8999999999 99999999999999998888888999998765433 3467899999
Q ss_pred CchhhhHHHHHhhhcC-----CCCeEEEEEcCCcc-chhhHHHHHHHHHHcCCC---EEEEEecCCccccc-cccccccC
Q 026778 148 QLPHAVGAAYALKMDR-----KDACAVTYFGDGGT-SEGDFHAALNFSAVTEAP---VIFICRNNGWAIST-PISDQFRS 217 (233)
Q Consensus 148 ~~~~A~G~A~a~k~~~-----~~~vvv~~~GDG~~-~~G~~~Ealn~A~~~~lP---vvfvv~nN~~ais~-~~~~q~~~ 217 (233)
++|+|+|+|+|.++++ .+.+++|++|||++ ++|.+|||||+|+.|++| +||||+||+|+|++ +...+...
T Consensus 326 ~~p~A~G~A~A~~~~~~~~~~~~~~vv~v~GDGa~a~qG~~~Ealn~A~~~~lp~gg~I~vv~nN~~~ist~~~~~~~~~ 405 (933)
T 2jgd_A 326 VSPVVIGSVRARLDRLDEPSSNKVLPITIHGDAAVTGQGVVQETLNMSKARGYEVGGTVRIVINNQVGFTTSNPLDARST 405 (933)
T ss_dssp HHHHHHHHHHHHHTTSSSCCGGGEEEEEEEEHHHHHHCTHHHHHHHHTTSTTTCCSCCEEEEEECC--------------
T ss_pred ccCHHHHHHHHHHhhccccCCCCeEEEEEECCcccccCCHHHHHHHHhhccCCCCCceEEEEEeCCccccCCCHHhcccc
Confidence 9999999999999984 77899999999997 999999999999999999 99999999999999 98888776
Q ss_pred CCchhhh--cccccccc
Q 026778 218 IPSLPCL--SNILTILL 232 (233)
Q Consensus 218 ~~~~~~~--~~~~~~~~ 232 (233)
+.++++. .++|.+.|
T Consensus 406 ~~~~~~a~a~g~p~~~V 422 (933)
T 2jgd_A 406 PYCTDIGKMVQAPIFHV 422 (933)
T ss_dssp -CGGGGGGTTTCCEEEE
T ss_pred hhHHHHHHHcCCCEEEE
Confidence 7665544 45666643
No 7
>2yic_A 2-oxoglutarate decarboxylase; lyase; HET: TPP; 1.96A {Mycobacterium smegmatis} PDB: 2xta_A* 2y0p_A* 2xt9_A* 2yid_A*
Probab=100.00 E-value=1.6e-37 Score=312.41 Aligned_cols=216 Identities=15% Similarity=0.119 Sum_probs=172.3
Q ss_pred CeeEEeCCCCC-CC----CCCCCCCCCHHHHHHHHHHHHHHhHHHHHHHHHHhcCcccccccCcchHHHHHHHHhccC--
Q 026778 13 PCYRVLDDDGQ-PF----PDSSFVKVSEGVAIKMYNDMVTLQTMDTIFYEAQRQGRISFYLTTSGEEAINIASAAAIK-- 85 (233)
Q Consensus 13 ~~~~vl~~~g~-~~----~~~~~~~~s~e~l~~lyr~M~~~R~~d~~~~~l~r~G~i~~~~~~~GqEa~~vg~~~aL~-- 85 (233)
+..++.|++++ ++ +... +.+|+|+++++|+.|+++|.||+++..++++|+. ++..||||+++|++.+|+
T Consensus 91 e~~~i~~~~~~~w~~~~~e~~~-~~~s~e~~~~~y~~m~~~R~fE~~l~~~~~~~k~---~g~~G~Ea~~~g~~~~l~~~ 166 (868)
T 2yic_A 91 EYTHILEPEQQRWIQERVETKH-DKPTVAEQKYILSKLNAAEAFETFLQTKYVGQKR---FSLEGAETVIPMMDAVIDQC 166 (868)
T ss_dssp ECTTCSCHHHHHHHHHHHSSCC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHCSSCGG---GCCTTCTTHHHHHHHHHHHH
T ss_pred ceeccCChHHhHHHHHHhccCC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc---ccCCChHHHHHHHHHHHHHh
Confidence 44556666664 22 1112 6799999999999999999999999999998885 345999999999997754
Q ss_pred ----CCCeEec-CCccchhhhh--cCCCHHHHHHHHhcCCCCC-C-CCCCCCcccCCCc------------ccccccccc
Q 026778 86 ----NDDFVVP-QYREPGVLLW--RGFSMQEFANQCFGNKADY-G-KGRQMPIHYGSNK------------HNYFTVSST 144 (233)
Q Consensus 86 ----~~D~~~~-~yR~~~~~l~--rG~~~~~~l~e~~g~~~g~-~-~Gr~~~~H~~~~~------------~~~~~~~g~ 144 (233)
++|++++ +||+|++.|+ +|+|++++|+|++|+.+++ + +|+++++|++... .++.+.+++
T Consensus 167 ~~l~~~D~v~gm~hRg~~~~Lan~~G~~~~~i~ae~~G~~~g~~~~g~gdv~~Hlg~~~~~~~~~g~~~v~l~l~~n~s~ 246 (868)
T 2yic_A 167 AEHGLDEVVIAMPHRGRLNVLANIVGKPYSQIFSEFEGNLNPSQAHGSGDVKYHLGATGTYIQMFGDNDIEVSLTANPSH 246 (868)
T ss_dssp HHTTCSEEEEECCSTTHHHHHHHTTCCCHHHHTTTCC------------CGGGTCCEEEEEECSSSSCEEEEEECCCCSS
T ss_pred hhCCCCCEEEeccccchHHHHHHHhCCCHHHHHHHhcCCCCCCccCCCCCccccCCccccccccCCCcceeeeecCCCcc
Confidence 8999998 8999999999 9999999999999999877 3 5677789986543 345667899
Q ss_pred CCCCchhhhHHHHHhhhcC----------CCCeEEEEEcCCc-cchhhHHHHHHHHHHcCCC---EEEEEecCCcccccc
Q 026778 145 IATQLPHAVGAAYALKMDR----------KDACAVTYFGDGG-TSEGDFHAALNFSAVTEAP---VIFICRNNGWAISTP 210 (233)
Q Consensus 145 lG~~~~~A~G~A~a~k~~~----------~~~vvv~~~GDG~-~~~G~~~Ealn~A~~~~lP---vvfvv~nN~~ais~~ 210 (233)
+|+++|+|+|+|+|.|+++ .+.+++|++|||+ ++||.||||||+|+.|++| +||||+||+|+||++
T Consensus 247 Lg~~~P~A~G~A~A~k~~~~~~~~~~~~~~~~~vv~~~GDGa~~~eG~v~Ealn~A~~~~lp~g~vi~iv~NN~~g~st~ 326 (868)
T 2yic_A 247 LEAVDPVLEGLVRAKQDLLDTGEEGSDNRFSVVPLMLHGDAAFAGQGVVAETLNLALLRGYRTGGTIHIVVNNQIGFTTA 326 (868)
T ss_dssp TTTTHHHHHHHHHHHHHHHTCSTTSSSCSCCEEEEEEEEHHHHHHCHHHHHHHTTTTCTTTCCSCCEEEEEECSCBTTBC
T ss_pred ccccccHHHHHHHHHHhhccCCcccccccCCceEEEEECCcccccccHHHHHHHHHHhcCCCCCCeEEEEEcCCcccccC
Confidence 9999999999999999875 6679999999999 4999999999999999999 999999999999998
Q ss_pred ccccccCCCch--hhhcccccccc
Q 026778 211 ISDQFRSIPSL--PCLSNILTILL 232 (233)
Q Consensus 211 ~~~q~~~~~~~--~~~~~~~~~~~ 232 (233)
.+.+.....+. ++-.++|.++|
T Consensus 327 ~~~~~s~~~~~~~a~a~G~p~~~V 350 (868)
T 2yic_A 327 PTDSRSSEYCTDVAKMIGAPIFHV 350 (868)
T ss_dssp HHHHCSSSSTTGGGGGGTCCEEEE
T ss_pred ccccccccCHHHHHHhCCCcEEEE
Confidence 76565544443 44556777765
No 8
>2xt6_A 2-oxoglutarate decarboxylase; lyase, KDH, KGD; HET: TPP; 2.74A {Mycobacterium smegmatis}
Probab=100.00 E-value=5.3e-37 Score=315.14 Aligned_cols=216 Identities=15% Similarity=0.117 Sum_probs=170.7
Q ss_pred CeeEEeCCCCC-CCC----CCCCCCCCHHHHHHHHHHHHHHhHHHHHHHHHHhcCcccccccCcchHHHHHHHHhcc---
Q 026778 13 PCYRVLDDDGQ-PFP----DSSFVKVSEGVAIKMYNDMVTLQTMDTIFYEAQRQGRISFYLTTSGEEAINIASAAAI--- 84 (233)
Q Consensus 13 ~~~~vl~~~g~-~~~----~~~~~~~s~e~l~~lyr~M~~~R~~d~~~~~l~r~G~i~~~~~~~GqEa~~vg~~~aL--- 84 (233)
+..++.|++++ ++. ... +.+|+|+++++|+.|+++|.||+++..++++|+. ++..||||+++|++.+|
T Consensus 336 e~~~i~~~~~~~w~~~~~e~~~-~~~s~e~~~~~y~~m~~~r~fE~~l~~~~~~~k~---~g~~GqEa~~~g~~~~l~~~ 411 (1113)
T 2xt6_A 336 EYTHILEPEQQRWIQERVETKH-DKPTVAEQKYILSKLNAAEAFETFLQTKYVGQKR---FSLEGAETVIPMMDAVIDQC 411 (1113)
T ss_dssp ECTTCSCHHHHHHHHHHHHSCC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHCSSCGG---GCCTTCTTHHHHHHHHHHHH
T ss_pred ceeccCCHHHhHHHHHHhhcCC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCc---ccCCChHHHHHHHHHHHHHh
Confidence 44556666654 221 112 6799999999999999999999999999999885 23499999999998775
Q ss_pred ---CCCCeEec-CCccchhhhh--cCCCHHHHHHHHhcCCCCC-C-CCCCCCcccCCCc------------ccccccccc
Q 026778 85 ---KNDDFVVP-QYREPGVLLW--RGFSMQEFANQCFGNKADY-G-KGRQMPIHYGSNK------------HNYFTVSST 144 (233)
Q Consensus 85 ---~~~D~~~~-~yR~~~~~l~--rG~~~~~~l~e~~g~~~g~-~-~Gr~~~~H~~~~~------------~~~~~~~g~ 144 (233)
+++|++++ +||+|++.|+ +|+|++++|+|++|+.+++ + +|+++++|++... .++.+.+|+
T Consensus 412 ~~l~~~D~v~gm~hRg~~~~La~~~G~~~~~i~ae~~G~~~g~~~~g~gdv~~Hlg~~~~~~~~~g~~~v~l~l~~n~s~ 491 (1113)
T 2xt6_A 412 AEHGLDEVVIAMPHRGRLNVLANIVGKPYSQIFSEFEGNLNPSQAHGSGDVKYHLGATGTYIQMFGDNDIEVSLTANPSH 491 (1113)
T ss_dssp HHTTCSEEEEECCSTTHHHHHHHTTCCCHHHHSTTC-------------CGGGTCCEEEEEECSSSSCEEEEEECCCCSS
T ss_pred hhCCCCCEEEeccccchHHHHHHHhCCCHHHHHHHhcCCCCCCccCCCCCccccCCccccccccCCCcceeeeecCCCcc
Confidence 48999998 8999999999 9999999999999999887 3 5677789986533 345677899
Q ss_pred CCCCchhhhHHHHHhhhcC----------CCCeEEEEEcCCc-cchhhHHHHHHHHHHcCCC---EEEEEecCCcccccc
Q 026778 145 IATQLPHAVGAAYALKMDR----------KDACAVTYFGDGG-TSEGDFHAALNFSAVTEAP---VIFICRNNGWAISTP 210 (233)
Q Consensus 145 lG~~~~~A~G~A~a~k~~~----------~~~vvv~~~GDG~-~~~G~~~Ealn~A~~~~lP---vvfvv~nN~~ais~~ 210 (233)
+|+++|+|+|+|+|.|+++ .+.+++|++|||+ ++||.||||||+|+.|++| +||||+||+|+|+++
T Consensus 492 Lg~~~p~A~G~A~A~k~~~~~~~~~~~~~~~~~~v~~~GDGa~~~eG~~~Ealn~A~~~~lp~g~vi~iv~NN~~gist~ 571 (1113)
T 2xt6_A 492 LEAVDPVLEGLVRAKQDLLDTGEEGSDNRFSVVPLMLHGDAAFAGQGVVAETLNLALLRGYRTGGTIHIVVNNQIGFTTA 571 (1113)
T ss_dssp TTTTHHHHHHHHHHHHHHTTBSTTSSBSCCCEEEEEEEEHHHHHHCTHHHHHHTTTTCTTTCCSCCEEEEEECSCBTTBC
T ss_pred ccccccHHHHHHHHHHHhccccCccccccCCcEEEEEECCcccccccHHHHHHHHHhhcCCCCCCeEEEEEeCCcccccC
Confidence 9999999999999999876 5789999999999 5999999999999999999 999999999999998
Q ss_pred ccccccCCCch--hhhcccccccc
Q 026778 211 ISDQFRSIPSL--PCLSNILTILL 232 (233)
Q Consensus 211 ~~~q~~~~~~~--~~~~~~~~~~~ 232 (233)
.+.+.....+. ++-.++|.++|
T Consensus 572 ~~~~~s~~~~~~~a~a~G~p~~~V 595 (1113)
T 2xt6_A 572 PTDSRSSEYCTDVAKMIGAPIFHV 595 (1113)
T ss_dssp HHHHCSSSSTTGGGGGGTCCEEEE
T ss_pred ccccccccCHHHHHHhcCCcEEEE
Confidence 76565444443 34456777664
No 9
>2o1s_A 1-deoxy-D-xylulose-5-phosphate synthase; DXS, thiamine, isoprenoid, transferase; HET: TDP; 2.40A {Escherichia coli}
Probab=99.94 E-value=3.6e-27 Score=229.85 Aligned_cols=185 Identities=15% Similarity=0.140 Sum_probs=135.3
Q ss_pred CCCeeEEeCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHhHHHHHHHHHHhcCcccccccCcchHHHHHHHHhccC-CCCe
Q 026778 11 RIPCYRVLDDDGQPFPDSSFVKVSEGVAIKMYNDMVTLQTMDTIFYEAQRQGRISFYLTTSGEEAINIASAAAIK-NDDF 89 (233)
Q Consensus 11 ~~~~~~vl~~~g~~~~~~~~~~~s~e~l~~lyr~M~~~R~~d~~~~~l~r~G~i~~~~~~~GqEa~~vg~~~aL~-~~D~ 89 (233)
++|.+.+|+ ++..|.+.+.++.++|.++++.| |.+..++.. ++ .|+++++.|+|++.+++..+++ +.|+
T Consensus 4 ~~~~~~~l~---~i~~p~d~~~l~~~~l~~l~~~i---R~~~~~~~~--~~--~Gh~~~~lg~~~~~~~l~~~~~~~~D~ 73 (621)
T 2o1s_A 4 DIAKYPTLA---LVDSTQELRLLPKESLPKLCDEL---RRYLLDSVS--RS--SGHFASGLGTVELTVALHYVYNTPFDQ 73 (621)
T ss_dssp CTTTSTTGG---GCSSHHHHTTSCGGGHHHHHHHH---HHHHHHHSC--GG--GCTHHHHHTTHHHHHHHHHHSCTTTSE
T ss_pred CCCCCchhh---hcCChHHhhhCCHHHHHHHHHHH---HHHHHHHHh--hc--CCCcCCChhHHHHHHHHHhccCCCCCE
Confidence 345555565 34444566789999999999999 776655542 22 3788899999999999999999 8999
Q ss_pred Ee--cCCccchhhhhcCCCHHHHHHHHhcCCCCCCCCCCCCcccCC--CccccccccccCCCCchhhhHHHHHhhhcCCC
Q 026778 90 VV--PQYREPGVLLWRGFSMQEFANQCFGNKADYGKGRQMPIHYGS--NKHNYFTVSSTIATQLPHAVGAAYALKMDRKD 165 (233)
Q Consensus 90 ~~--~~yR~~~~~l~rG~~~~~~l~e~~g~~~g~~~Gr~~~~H~~~--~~~~~~~~~g~lG~~~~~A~G~A~a~k~~~~~ 165 (233)
++ ..||++++.+.+|. .+++ .. +-... |. +.|... .+.. ...+|++|+++|.|+|+|+|.|+++.+
T Consensus 74 ~v~~~gH~~y~~~~l~G~-~~~~-~~-~r~~~----g~--~g~~~~~~s~~~-~~~~G~~G~gl~~A~G~AlA~~~~~~~ 143 (621)
T 2o1s_A 74 LIWDVGHQAYPHKILTGR-RDKI-GT-IRQKG----GL--HPFPWRGESEYD-VLSVGHSSTSISAGIGIAVAAEKEGKN 143 (621)
T ss_dssp EEESSSTTCHHHHHTTTT-GGGG-GG-TTSTT----SC--CSSCCTTTCTTC-CSCCSSSSCHHHHHHHHHHHHHHHTSC
T ss_pred EEEeCchHHHHHHHHhCC-Hhhh-hc-ccccC----CC--CCCCCCCCCCCC-ccCCcccchHHHHHHHHHHHHHHhCCC
Confidence 99 77999999999997 2221 11 11111 11 112111 1233 446999999999999999999999999
Q ss_pred CeEEEEEcCCccchhhHHHHHHHHHHcCCCEEEEEecCCccccccccccc
Q 026778 166 ACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAISTPISDQF 215 (233)
Q Consensus 166 ~vvv~~~GDG~~~~G~~~Ealn~A~~~~lPvvfvv~nN~~ais~~~~~q~ 215 (233)
+.|+|++|||++++|++||+||+|+.|++|+||||+||+|+|++++..+.
T Consensus 144 ~~Vv~v~GDG~~~~G~~~EaL~~A~~~~~pli~vvnnN~~~i~~~~~~~~ 193 (621)
T 2o1s_A 144 RRTVCVIGDGAITAGMAFEAMNHAGDIRPDMLVILNDNEMSISENVGALN 193 (621)
T ss_dssp CCEEEEEETTGGGSHHHHHHHHHHHHHCCSEEEEEEECC-----------
T ss_pred CeEEEEEchhhhhccHHHHHHHHHHhhCCCEEEEEeCCCcccCCCcchHH
Confidence 99999999999999999999999999999999999999999999887653
No 10
>2o1x_A 1-deoxy-D-xylulose-5-phosphate synthase; thiamin, isoprenoid, DXS, transferase; HET: TDP; 2.90A {Deinococcus radiodurans}
Probab=99.91 E-value=1.9e-25 Score=218.06 Aligned_cols=171 Identities=16% Similarity=0.108 Sum_probs=135.0
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHhHHHHHHHHHHhcCcccccccCcchHHHHHHHHhccC-CCCeEecCCccch---hhhh
Q 026778 27 DSSFVKVSEGVAIKMYNDMVTLQTMDTIFYEAQRQGRISFYLTTSGEEAINIASAAAIK-NDDFVVPQYREPG---VLLW 102 (233)
Q Consensus 27 ~~~~~~~s~e~l~~lyr~M~~~R~~d~~~~~l~r~G~i~~~~~~~GqEa~~vg~~~aL~-~~D~~~~~yR~~~---~~l~ 102 (233)
+.+.+.++.++|.++|+.| |.+...+.. + ..|+++++.|+-.+.+++...++ ++|+++.+ |+|+ +.+.
T Consensus 19 p~d~~~l~~~~l~~l~~~i---R~~~~~~~~---~-~~Gh~~~~lg~v~l~~aL~~~~~~~~D~~v~~-~GH~~y~~~~l 90 (629)
T 2o1x_A 19 PKDLKRLSREQLPALTEEL---RGEIVRVCS---R-GGLHLASSLGAVDIITALHYVLDSPRDRILFD-VGHQAYAHKIL 90 (629)
T ss_dssp HHHHTTSCGGGHHHHHHHH---HHHHHHHHT---T-SSSCHHHHHHTHHHHHHHHHHSCTTTSEEEES-SSTTCHHHHHT
T ss_pred hhhhhhCCHHHHHHHHHHH---HHHHHHHHH---h-cCCcCCCchhHHHHHHHHHhhcCCCCCeEEec-CchHHHHHHHH
Confidence 3456678999999999999 766544442 2 24678888998555444444458 89999999 9996 6677
Q ss_pred cCC-CHHHHHHHHhcCCCCCCCCCCCCcccCCCccccccccccCCCCchhhhHHHHHhhhcCCCCeEEEEEcCCccchhh
Q 026778 103 RGF-SMQEFANQCFGNKADYGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGD 181 (233)
Q Consensus 103 rG~-~~~~~l~e~~g~~~g~~~Gr~~~~H~~~~~~~~~~~~g~lG~~~~~A~G~A~a~k~~~~~~vvv~~~GDG~~~~G~ 181 (233)
+|. +.-+.+.++.|. +|+++++. ++ ++...+|++|+++|.|+|+|+|.|+++.++.|+|++|||++++|+
T Consensus 91 ~G~~~~~~~~r~~~g~-~G~p~~~~-s~-------~~~~~~G~~G~gl~~AvG~AlA~k~~~~~~~Vv~v~GDG~~~~G~ 161 (629)
T 2o1x_A 91 TGRRDQMADIKKEGGI-SGFTKVSE-SE-------HDAITVGHASTSLTNALGMALARDAQGKDFHVAAVIGDGSLTGGM 161 (629)
T ss_dssp TTTGGGGGGTTSTTSC-CSSCCGGG-CT-------TCCSCCSSSSCHHHHHHHHHHHHHHHTCCCCEEEEEETTGGGSHH
T ss_pred hCcHhHHhCcccCCCC-CCCCCCCC-CC-------CCCcCCCcccccHhHHHHHHHHHHHhCCCCeEEEEEchhhhhccH
Confidence 786 444445666654 35544432 22 346678999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCCCEEEEEecCCcccccccccc
Q 026778 182 FHAALNFSAVTEAPVIFICRNNGWAISTPISDQ 214 (233)
Q Consensus 182 ~~Ealn~A~~~~lPvvfvv~nN~~ais~~~~~q 214 (233)
+||+||+|+.|++|+||||+||+|+|++++..+
T Consensus 162 ~~EaL~~A~~~~~pli~IvnnN~~~i~~~~~~~ 194 (629)
T 2o1x_A 162 ALAALNTIGDMGRKMLIVLNDNEMSISENVGAM 194 (629)
T ss_dssp HHHHHHHHHHHCCSEEEEEEECSBSSSBCCSSH
T ss_pred HHHHHHHHHhhCCCEEEEEECCCCCCCCChhHH
Confidence 999999999999999999999999999988744
No 11
>3rim_A Transketolase, TK; TPP, transferase; HET: TPP; 2.49A {Mycobacterium tuberculosis}
Probab=99.82 E-value=5e-20 Score=182.04 Aligned_cols=175 Identities=15% Similarity=0.137 Sum_probs=127.8
Q ss_pred HHhHHHHHHHHHHhcCcccccccCcchHHHHHHHHhccC---------CCCeEecCCccch------hhhhcC--CCHHH
Q 026778 47 TLQTMDTIFYEAQRQGRISFYLTTSGEEAINIASAAAIK---------NDDFVVPQYREPG------VLLWRG--FSMQE 109 (233)
Q Consensus 47 ~~R~~d~~~~~l~r~G~i~~~~~~~GqEa~~vg~~~aL~---------~~D~~~~~yR~~~------~~l~rG--~~~~~ 109 (233)
.+|.+-..+......|+++...++. |.+.+.....|+ +.|.++.+ -+|+ ++...| ++.++
T Consensus 29 ~iR~~~~~~v~~a~sGH~g~~ls~a--~i~~~L~~~~l~~~p~~p~~~~rDrfvls-~GH~s~~lYa~l~l~G~~~~~~~ 105 (700)
T 3rim_A 29 TIRVLAADAVQKVGNGHPGTAMSLA--PLAYTLFQRTMRHDPSDTHWLGRDRFVLS-AGHSSLTLYIQLYLGGFGLELSD 105 (700)
T ss_dssp HHHHHHHHHHHHHTCSCCHHHHHTH--HHHHHHHHTTCCCCTTCTTCTTCCEEEES-STTCHHHHHHHHHHTTSSCCHHH
T ss_pred HHHHHHHHHHHHhCCCCCCccHHHH--HHHHHHHHHHhCCCCCCCCCCCCCeEEEC-CCchhHHHHHHHHHhCCCCCHHH
Confidence 4566655555544567776665554 555544444676 35887765 3454 344466 46665
Q ss_pred HHHHHhcCCCCCCCCCCCCcccCC-CccccccccccCCCCchhhhHHHHHhhhc-------------CCCCeEEEEEcCC
Q 026778 110 FANQCFGNKADYGKGRQMPIHYGS-NKHNYFTVSSTIATQLPHAVGAAYALKMD-------------RKDACAVTYFGDG 175 (233)
Q Consensus 110 ~l~e~~g~~~g~~~Gr~~~~H~~~-~~~~~~~~~g~lG~~~~~A~G~A~a~k~~-------------~~~~vvv~~~GDG 175 (233)
+ .. |-+. |...+.|... ...++..++|++|++++.|+|+|+|.|++ +.+++|+|++|||
T Consensus 106 l-~~-fr~~-----gs~~~ghp~~~~~pgv~~~tG~lG~gl~~AvG~AlA~k~~~~~~~~~~~~~~~~~~~~v~~~~GDG 178 (700)
T 3rim_A 106 I-ES-LRTW-----GSKTPGHPEFRHTPGVEITTGPLGQGLASAVGMAMASRYERGLFDPDAEPGASPFDHYIYVIASDG 178 (700)
T ss_dssp H-TT-TTST-----TCSCCSSCCBTTBTTCCSCCCSTTHHHHHHHHHHHHHHHHHHHHCTTSCTTCSTTCCCEEEEEEHH
T ss_pred H-HH-hhcC-----CCCCCCCCCCCCCCCccccccccCCcchHHHHHHHHHHHHhhhccccccccccCCCCeEEEEECCc
Confidence 3 22 3332 2223556543 34689999999999999999999999985 5688999999999
Q ss_pred ccchhhHHHHHHHHHHcCCC-EEEEEecCCccccccccccccCCCchhhhc--ccccccc
Q 026778 176 GTSEGDFHAALNFSAVTEAP-VIFICRNNGWAISTPISDQFRSIPSLPCLS--NILTILL 232 (233)
Q Consensus 176 ~~~~G~~~Ealn~A~~~~lP-vvfvv~nN~~ais~~~~~q~~~~~~~~~~~--~~~~~~~ 232 (233)
++++|.+|||+|+|++|+|| +|+||+||+|+|+++++.+. .++++++++ +|+.+.|
T Consensus 179 ~l~eG~~~EAl~~A~~~~L~nli~i~d~N~~si~~~~~~~~-~~~~~~~~~a~G~~~~~V 237 (700)
T 3rim_A 179 DIEEGVTSEASSLAAVQQLGNLIVFYDRNQISIEDDTNIAL-CEDTAARYRAYGWHVQEV 237 (700)
T ss_dssp HHHSHHHHHHHHHHHHTTCTTEEEEEEECSEETTEEGGGTC-CCCHHHHHHHHTCEEEEE
T ss_pred ccccChHHHHHHHHHHcCCCcEEEEEECCCcccccchhhcc-chhHHHHHHHcCCeEEEE
Confidence 99999999999999999997 99999999999999998764 788888886 4555543
No 12
>3mos_A Transketolase, TK; thiamin diphosphate TPP THDP enzyme catalysis sugar metaboli transferase; HET: TPP; 1.75A {Homo sapiens} PDB: 3ooy_A*
Probab=99.78 E-value=1.3e-18 Score=169.63 Aligned_cols=189 Identities=17% Similarity=0.128 Sum_probs=133.0
Q ss_pred CCCHHHHHHHHHHHHHHhHHHHHHHHHHhcCcccccccCcchHHHHHHHHhccC--C-------CCeEecCCccchh---
Q 026778 32 KVSEGVAIKMYNDMVTLQTMDTIFYEAQRQGRISFYLTTSGEEAINIASAAAIK--N-------DDFVVPQYREPGV--- 99 (233)
Q Consensus 32 ~~s~e~l~~lyr~M~~~R~~d~~~~~l~r~G~i~~~~~~~GqEa~~vg~~~aL~--~-------~D~~~~~yR~~~~--- 99 (233)
.+++..+.+|-+....+|.+-..+......|.++...++. |.+.+-....|+ | .|.++.+ -+|+.
T Consensus 4 ~~~~~~~~~l~~~a~~iR~~~i~~~~~~~~GH~g~~l~~~--e~~~~L~~~~~~~~~~~p~~~~rDr~v~s-~GH~~~~l 80 (616)
T 3mos_A 4 KPDQQKLQALKDTANRLRISSIQATTAAGSGHPTSCCSAA--EIMAVLFFHTMRYKSQDPRNPHNDRFVLS-KGHAAPIL 80 (616)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHHTCSCHHHHHTTH--HHHHHHHHTTCBCCTTCTTCTTSCEEEES-SGGGHHHH
T ss_pred cccccCHHHHHHHHHHHHHHHHHHHHhcCCCcCCcchhHH--HHHHHHHHHhhccCCCCCCCCCCCeEEEc-CccHHHHH
Confidence 4566666666666677787766655554557766555554 555443334453 2 5887766 36664
Q ss_pred ---hhhcCC-CHHHHHHHHhcCCCCCCCCCCCCcccCCCccccccccccCCCCchhhhHHHHHhhhcCC-CCeEEEEEcC
Q 026778 100 ---LLWRGF-SMQEFANQCFGNKADYGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRK-DACAVTYFGD 174 (233)
Q Consensus 100 ---~l~rG~-~~~~~l~e~~g~~~g~~~Gr~~~~H~~~~~~~~~~~~g~lG~~~~~A~G~A~a~k~~~~-~~vvv~~~GD 174 (233)
+...|. +.++ |.. |-+ .|...+.|......++...+|++|+++|.|+|+|+|.++.+. ++.|+|++||
T Consensus 81 y~~~~l~G~~~~~~-l~~-~r~-----~~s~l~ghp~~~~~~~d~~~G~lG~gl~~A~G~AlA~~~~~~~~~~vv~v~GD 153 (616)
T 3mos_A 81 YAVWAEAGFLAEAE-LLN-LRK-----ISSDLDGHPVPKQAFTDVATGSLGQGLGAACGMAYTGKYFDKASYRVYCLLGD 153 (616)
T ss_dssp HHHHHHTTSSCGGG-GGG-TTC-----TTCSCCSSCCTTSTTCSSCCCSTTCHHHHHHHHHHHHHHTSCCSCCEEEEEET
T ss_pred HHHHHHcCCCCHHH-HHH-hcc-----CCCCCCCCCCCCCCcccccccccCCccHHHHHHHHHHHHhCCCCCEEEEEECc
Confidence 334564 4443 222 222 133345565444567777899999999999999999997666 5899999999
Q ss_pred CccchhhHHHHHHHHHHcCCC-EEEEEecCCccccccccccccCCCchhhhc--ccccc
Q 026778 175 GGTSEGDFHAALNFSAVTEAP-VIFICRNNGWAISTPISDQFRSIPSLPCLS--NILTI 230 (233)
Q Consensus 175 G~~~~G~~~Ealn~A~~~~lP-vvfvv~nN~~ais~~~~~q~~~~~~~~~~~--~~~~~ 230 (233)
|++++|.+||+||+|+.|+|| +|+|++||+|+|+.++..+...++++++++ +|+.+
T Consensus 154 G~~~eG~~~Eal~~A~~~~l~~livi~nnN~~~i~~~~~~~~~~~~~~~~~~a~G~~~~ 212 (616)
T 3mos_A 154 GELSEGSVWEAMAFASIYKLDNLVAILDINRLGQSDPAPLQHQMDIYQKRCEAFGWHAI 212 (616)
T ss_dssp GGGGSHHHHHHHHHHHHTTCTTEEEEEEECSBCSSSBCTTTTCHHHHHHHHHHTTCEEE
T ss_pred cccccCcHHHHHHHHHHcCCCcEEEEEECCCCCCcCCcccccChHHHHHHHHHcCCeEE
Confidence 999999999999999999998 788999999999999888776666766654 44444
No 13
>1r9j_A Transketolase; domains, EACH of the alpha/beta type, thiamine diphosphate binding domain, transferase; HET: TPP; 2.22A {Leishmania mexicana mexicana} SCOP: c.36.1.6 c.36.1.10 c.48.1.1
Probab=99.78 E-value=8.7e-19 Score=172.52 Aligned_cols=175 Identities=19% Similarity=0.210 Sum_probs=127.1
Q ss_pred HHHHhHHHHHHHHHHhcCcccccccCcchHHHHHHHHhccCC---------CCeEecCCccchh------hhhcCC--CH
Q 026778 45 MVTLQTMDTIFYEAQRQGRISFYLTTSGEEAINIASAAAIKN---------DDFVVPQYREPGV------LLWRGF--SM 107 (233)
Q Consensus 45 M~~~R~~d~~~~~l~r~G~i~~~~~~~GqEa~~vg~~~aL~~---------~D~~~~~yR~~~~------~l~rG~--~~ 107 (233)
...+|.+-..+......|++|...++. |.+.+.....|+- .|.++.+ .+|+. +...|. +.
T Consensus 10 a~~iR~~~~~~v~~a~~GH~g~~ls~a--~~~~~L~~~~l~~~p~~p~~~~rDrfvls-~GH~~~~lYa~l~l~G~~~~~ 86 (673)
T 1r9j_A 10 ANCIRCLAADIVQGGKSGHPGTPMGMA--PMSAVLWTEVMKYNSQDPDWVDRDRFVMS-NGHGCALQYALLHMAGYNLTM 86 (673)
T ss_dssp HHHHHHHHHHHHHHHTCSCCHHHHHTH--HHHHHHHHTTCCCCTTCTTCTTCCEEEES-SGGGHHHHHHHHHHHTCSCCH
T ss_pred HHHHHHHHHHHHHHcCCCCcchhHHHH--HHHHHHHHHhhCCCCCCCCCCCCCeEEEc-cccHHHHHHHHHHHcCCCCCH
Confidence 344565555555554678777666664 6665555555652 2776655 35653 334565 45
Q ss_pred HHHHHHHhcCCCCCCCCCCCCcccCCC-ccccccccccCCCCchhhhHHHHHhhhcC----------CCCeEEEEEcCCc
Q 026778 108 QEFANQCFGNKADYGKGRQMPIHYGSN-KHNYFTVSSTIATQLPHAVGAAYALKMDR----------KDACAVTYFGDGG 176 (233)
Q Consensus 108 ~~~l~e~~g~~~g~~~Gr~~~~H~~~~-~~~~~~~~g~lG~~~~~A~G~A~a~k~~~----------~~~vvv~~~GDG~ 176 (233)
+++. . |.+. |...+.|.... ..++...+|++|+++|.|+|+|+|.|+.+ .+++|+|++|||+
T Consensus 87 ~~l~-~-~r~~-----~s~~~ghp~~~~~pgv~~~tG~lG~gl~~AvG~AlA~~~~~~~~n~~g~~~~d~~v~~~~GDG~ 159 (673)
T 1r9j_A 87 DDLK-G-FRQD-----GSRTPGHPERFVTPGVEVTTGPLGQGIANAVGLAIAEAHLAATFNRPGYNIVDHYTYVYCGDGC 159 (673)
T ss_dssp HHHH-T-TTST-----TCSCCSSCCTTTSTTCCSCCCSTTHHHHHHHHHHHHHHHHHHHHCBTTBCCCCCCEEEEECHHH
T ss_pred HHHH-h-hccC-----CCCCCCCCCCCCCCCeeeccCCCCCcHHHHHHHHHHHHHhhhhccccccCCCCCEEEEEECcch
Confidence 5543 2 3332 22334565432 35888999999999999999999999865 6889999999999
Q ss_pred cchhhHHHHHHHHHHcCCC-EEEEEecCCccccccccccccCCCchhhhcc--cccc
Q 026778 177 TSEGDFHAALNFSAVTEAP-VIFICRNNGWAISTPISDQFRSIPSLPCLSN--ILTI 230 (233)
Q Consensus 177 ~~~G~~~Ealn~A~~~~lP-vvfvv~nN~~ais~~~~~q~~~~~~~~~~~~--~~~~ 230 (233)
+++|.+|||+|+|+.++|| +||||+||+|+|++++..++ .+++++++++ |+.+
T Consensus 160 ~~eG~~~Eal~~A~~~~L~~li~i~d~N~~~i~~~~~~~~-~~d~~~~~~a~G~~~~ 215 (673)
T 1r9j_A 160 LMEGVCQEALSLAGHLALEKLIVIYDSNYISIDGSTSLSF-TEQCHQKYVAMGFHVI 215 (673)
T ss_dssp HHSHHHHHHHHHHHHHTCTTEEEEEEECSBCSSSBGGGTC-CCCHHHHHHHTTCEEE
T ss_pred hcccHHHHHHHHHHHhCCCcEEEEEECCCCccccchhhcc-CHhHHHHHHHCCCeEE
Confidence 9999999999999999997 99999999999999999887 7888877765 4444
No 14
>1gpu_A Transketolase; transferase(ketone residues); HET: THD; 1.86A {Saccharomyces cerevisiae} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 PDB: 1ngs_A* 1trk_A* 1ay0_A* 1tkb_A* 1tka_A* 1tkc_A*
Probab=99.75 E-value=2.3e-18 Score=169.58 Aligned_cols=171 Identities=19% Similarity=0.206 Sum_probs=120.2
Q ss_pred HHHHhHHHHHHHHHHhcCcccccccCcchHHHHHHHHh-ccCC-------CCeEecCCccchh------hhhcCC--CHH
Q 026778 45 MVTLQTMDTIFYEAQRQGRISFYLTTSGEEAINIASAA-AIKN-------DDFVVPQYREPGV------LLWRGF--SMQ 108 (233)
Q Consensus 45 M~~~R~~d~~~~~l~r~G~i~~~~~~~GqEa~~vg~~~-aL~~-------~D~~~~~yR~~~~------~l~rG~--~~~ 108 (233)
...+|.+-..+......|+++...+.. |.+.+.... ..+| .|.++.+ -+|+. ....|. +.+
T Consensus 12 a~~iR~~~~~~v~~a~~GH~g~~l~~~--~i~~~L~~~~~~~~~~p~~~~rDr~v~s-~GH~~~~lYa~~~l~G~~~~~~ 88 (680)
T 1gpu_A 12 VSTIRILAVDTVSKANSGHPGAPLGMA--PAAHVLWSQMRMNPTNPDWINRDRFVLS-NGHAVALLYSMLHLTGYDLSIE 88 (680)
T ss_dssp HHHHHHHHHHHHHHHTCSCCHHHHHHH--HHHHHHHHTCCCCTTCTTCTTCCEEEES-SGGGHHHHHHHHHHTTCSCCHH
T ss_pred HHHHHHHHHHHHHHcCCCccCCchhHH--HHHHHHHHhCCCCccCCCCCCCCEEEEe-cchHHHHHHHHHHHhCCCCCHH
Confidence 445566655555544566665544333 443332222 2233 5777666 35553 344565 455
Q ss_pred HHHHHHhcCCCCCCCCCCCCcccCCCccccccccccCCCCchhhhHHHHHhhhcC----------CCCeEEEEEcCCccc
Q 026778 109 EFANQCFGNKADYGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDR----------KDACAVTYFGDGGTS 178 (233)
Q Consensus 109 ~~l~e~~g~~~g~~~Gr~~~~H~~~~~~~~~~~~g~lG~~~~~A~G~A~a~k~~~----------~~~vvv~~~GDG~~~ 178 (233)
++ .. |-+. |...+.|......++...+|++|+++|.|+|+|+|.++++ .+++|+|++|||+++
T Consensus 89 ~l-~~-~r~~-----g~~~~ghp~~~~~g~~~~~G~lG~gl~~AvG~AlA~~~~~~~~n~~~~~~~~~~vv~i~GDG~~~ 161 (680)
T 1gpu_A 89 DL-KQ-FRQL-----GSRTPGHPEFELPGVEVTTGPLGQGISNAVGMAMAQANLAATYNKPGFTLSDNYTYVFLGDGCLQ 161 (680)
T ss_dssp HH-TT-TTCT-----TCSCCSSCCTTSTTCCSCCCSTTHHHHHHHHHHHHHHHHHHHHCBTTBCCCCCCEEEEECHHHHH
T ss_pred HH-Hh-hccc-----CCCCCCCCCccCCCeeeccccccchHHHHHHHHHHHHHhccccccCccCCCCCeEEEEECCCccc
Confidence 43 22 3332 2223557655567899999999999999999999999765 478999999999999
Q ss_pred hhhHHHHHHHHHHcCCC-EEEEEecCCccccccccccccCCCchhhhcc
Q 026778 179 EGDFHAALNFSAVTEAP-VIFICRNNGWAISTPISDQFRSIPSLPCLSN 226 (233)
Q Consensus 179 ~G~~~Ealn~A~~~~lP-vvfvv~nN~~ais~~~~~q~~~~~~~~~~~~ 226 (233)
+|.+|||+|+|+.++|| +||||+||+|+|++++..++ .+++++++++
T Consensus 162 eG~~~Eal~~A~~~~L~~li~i~~nN~~~i~~~~~~~~-~~d~~~~~~a 209 (680)
T 1gpu_A 162 EGISSEASSLAGHLKLGNLIAIYDDNKITIDGATSISF-DEDVAKRYEA 209 (680)
T ss_dssp SHHHHHHHHHHHHTTCTTEEEEEEECSEETTEEGGGTC-CCCHHHHHHH
T ss_pred hhhHHHHHHHHHHhCCCcEEEEEECCCceEeccccccc-CccHHHHHHh
Confidence 99999999999999998 99999999999999988765 5677766654
No 15
>1itz_A Transketolase; calvin cycle, cofactor, thiamine pyrophosphate, plant, transferase; HET: TPP; 2.30A {Zea mays} SCOP: c.36.1.6 c.36.1.10 c.48.1.1
Probab=99.75 E-value=3.3e-18 Score=168.43 Aligned_cols=183 Identities=17% Similarity=0.161 Sum_probs=126.5
Q ss_pred CCCCCHHHHHHHHHHHHHHhHHHHHHHHHHhcCcccccccCcchHHHHHHHHhccC---------CCCeEecCCccchh-
Q 026778 30 FVKVSEGVAIKMYNDMVTLQTMDTIFYEAQRQGRISFYLTTSGEEAINIASAAAIK---------NDDFVVPQYREPGV- 99 (233)
Q Consensus 30 ~~~~s~e~l~~lyr~M~~~R~~d~~~~~l~r~G~i~~~~~~~GqEa~~vg~~~aL~---------~~D~~~~~yR~~~~- 99 (233)
-+.++.++|.++ ...+|.+-..+......|+++...++. |.+.+.....|+ +.|.++.+ -+|+.
T Consensus 8 ~~~l~~~~l~~~---a~~iR~~~~~~v~~a~~GH~g~~l~~~--~i~~~L~~~~~~~~p~~p~~~~rDr~vls-~GH~~~ 81 (675)
T 1itz_A 8 GKAATGELLEKS---VNTIRFLAIDAVEKANSGHPGLPMGCA--PMGHVLYDEVMRYNPKNPYWFNRDRFVLS-AGHGCM 81 (675)
T ss_dssp --CCCHHHHHHH---HHHHHHHHHHHHHHHTCSCCHHHHHHH--HHHHHHHHHTCCCCTTCTTCTTCCEEEES-SGGGHH
T ss_pred cCCCCHHHHHHH---HHHHHHHHHHHHHHcCCCccCccHhHH--HHHHHHHHHHhcCCcCCCCCCCCCeEEEc-CcchHH
Confidence 467888888754 455677665555554567666554433 444333322243 23776655 35553
Q ss_pred -----hhhcCC---CHHHHHHHHhcCCCCCCCCCCCCcccCC-CccccccccccCCCCchhhhHHHHHhhhcC-------
Q 026778 100 -----LLWRGF---SMQEFANQCFGNKADYGKGRQMPIHYGS-NKHNYFTVSSTIATQLPHAVGAAYALKMDR------- 163 (233)
Q Consensus 100 -----~l~rG~---~~~~~l~e~~g~~~g~~~Gr~~~~H~~~-~~~~~~~~~g~lG~~~~~A~G~A~a~k~~~------- 163 (233)
+...|. +.++ |.. |-+. |...+.|... ...++...+|++|+++|.|+|+|+|.|+++
T Consensus 82 ~lYa~l~l~G~~~~~~~~-l~~-~r~~-----~~~~~ghp~~~~~~~~~~~~G~lG~gl~~AvG~AlA~~~~~~~~n~~~ 154 (675)
T 1itz_A 82 LQYALLHLAGYDSVKEED-LKQ-FRQW-----GSRTPGHPENFETPGVEVTTGPLGQGIANAVGLALAEKHLAARFNKPD 154 (675)
T ss_dssp HHHHHHHHHTCTTCCHHH-HTT-TTST-----TCSSCSSCCTTTCTTCCSCCCSTTHHHHHHHHHHHHHHHHHHHHCBTT
T ss_pred HHHHHHHHcCCCCCCHHH-HHh-cccC-----CCCCCCCCCCCCCCCeeECCccHHhHHHHHHHHHHHhhhhcccccccc
Confidence 334565 4344 322 3222 1122345432 235888899999999999999999999876
Q ss_pred ---CCCeEEEEEcCCccchhhHHHHHHHHHHcCC-CEEEEEecCCccccccccccccCCCchhhhcc
Q 026778 164 ---KDACAVTYFGDGGTSEGDFHAALNFSAVTEA-PVIFICRNNGWAISTPISDQFRSIPSLPCLSN 226 (233)
Q Consensus 164 ---~~~vvv~~~GDG~~~~G~~~Ealn~A~~~~l-Pvvfvv~nN~~ais~~~~~q~~~~~~~~~~~~ 226 (233)
.++.|+|++|||++++|++|||+|+|+.++| |+|+||+||+|+|+.++.... .+++++++++
T Consensus 155 ~~~~~~~v~~i~GDG~~~eG~~~Eal~~A~~~~L~~li~i~~nN~~~i~~~~~~~~-~~d~~~~~~a 220 (675)
T 1itz_A 155 SEIVDHYTYVILGDGCQMEGIANEACSLAGHWGLGKLIAFYDDNHISIDGDTEIAF-TEDVSTRFEA 220 (675)
T ss_dssp BCCCCCCEEEEECHHHHHSHHHHHHHHHHHHTTCTTEEEEEEECSEETTEEGGGTC-CSCHHHHHHH
T ss_pred cCCCCCEEEEEECHhHhchhHHHHHHHHHHHhCCCcEEEEEECCCccCCCChhhhc-ChhHHHHHHh
Confidence 6889999999999999999999999999999 699999999999999988765 6777776654
No 16
>3kom_A Transketolase; rossmann fold, csgid, transferase, structural genomics, center for structural genomics of infectious DISE; HET: MSE; 1.60A {Francisella tularensis subsp}
Probab=99.74 E-value=3.1e-18 Score=168.36 Aligned_cols=173 Identities=18% Similarity=0.217 Sum_probs=114.4
Q ss_pred HHhHHHHHHHHHHhcCcccccccCcchHHHHHHHHhccC---------CCCeEecCCccchh------hhhcCC--CHHH
Q 026778 47 TLQTMDTIFYEAQRQGRISFYLTTSGEEAINIASAAAIK---------NDDFVVPQYREPGV------LLWRGF--SMQE 109 (233)
Q Consensus 47 ~~R~~d~~~~~l~r~G~i~~~~~~~GqEa~~vg~~~aL~---------~~D~~~~~yR~~~~------~l~rG~--~~~~ 109 (233)
.+|.+-..+......|+++...++. |.+.+.....|+ +.|.++.+ -+|+. +...|. +.++
T Consensus 12 ~iR~~~~~~v~~a~~GH~g~~l~~~--~i~~~L~~~~~~~~~~~p~~~~rDrfvls-~GH~s~~lYa~l~l~G~~~~~~~ 88 (663)
T 3kom_A 12 AIRFLSIDATLKAKSGHPGMPMGMA--DIATVLWTKFLKHNPNNPHWINRDRFVLS-NGHGSMLLYSLLHLTGYDLSIED 88 (663)
T ss_dssp HHHHHHHHHHHHHTCSCCHHHHHHH--HHHHHHHHHTCCCCTTCTTCTTSCEEEEC-SSSCHHHHHHHHHHHTCSCCHHH
T ss_pred HHHHHHHHHHHhcCCCCCCccHHHH--HHHHHHHhhheeeCCCCCCCCCCCeEEEe-CCcccHHHHHHHHHhCCCCCHHH
Confidence 4455544444443456655444332 444333333554 35888766 35553 334564 5555
Q ss_pred HHHHHhcCCCCCCCCCCCCcccCC-CccccccccccCCCCchhhhHHHHHhhhcCC----------CCeEEEEEcCCccc
Q 026778 110 FANQCFGNKADYGKGRQMPIHYGS-NKHNYFTVSSTIATQLPHAVGAAYALKMDRK----------DACAVTYFGDGGTS 178 (233)
Q Consensus 110 ~l~e~~g~~~g~~~Gr~~~~H~~~-~~~~~~~~~g~lG~~~~~A~G~A~a~k~~~~----------~~vvv~~~GDG~~~ 178 (233)
+ .. |-+.++ ..+.|... ...++...+|++|+++|.|+|+|+|.|+++. ++.|+|++|||+++
T Consensus 89 l-~~-~r~~~s-----~~~ghp~~~~~~gve~~tG~lG~gl~~AvG~AlA~~~~~~~~~~~~~~~~d~~v~~i~GDG~l~ 161 (663)
T 3kom_A 89 I-KN-FRQLHS-----KTPGHPEYGYTPGVETTTGPLGQGVANAVGMALGEKLLSDRYNTPDLKVIDHHTYVFLGDGCLM 161 (663)
T ss_dssp H-TT-TTSTTC-----SCCSSCCTTTSTTCCSCCCSTTHHHHHHHHHHHHHHHHHHHHCBTTBCSCCCCEEEEECHHHHH
T ss_pred H-Hh-hccCCC-----CCCCCCCCCCCCCcccCCcchhhHHHHHHHHHHhHHhhcccccccccccCCCeEEEEECchhhh
Confidence 3 22 333222 22445432 2458888999999999999999999998764 78999999999999
Q ss_pred hhhHHHHHHHHHHcCCC-EEEEEecCCccccccccccccCCCchhhhcc--cccc
Q 026778 179 EGDFHAALNFSAVTEAP-VIFICRNNGWAISTPISDQFRSIPSLPCLSN--ILTI 230 (233)
Q Consensus 179 ~G~~~Ealn~A~~~~lP-vvfvv~nN~~ais~~~~~q~~~~~~~~~~~~--~~~~ 230 (233)
+|.+|||||+|+.++|| +|+|++||+|+|+.++..+. .+++++++++ |+.+
T Consensus 162 eG~~~Eal~~A~~~~L~~livi~dnN~~~i~~~~~~~~-~~d~~~~~~a~G~~~~ 215 (663)
T 3kom_A 162 EGVSHEACSLAGTLGLNKLVAFWDDNNISIDGDTKGWF-SDNTPERFRAYGWHVI 215 (663)
T ss_dssp SHHHHHHHHHHHHHTCTTEEEEEEECC-----CGGGTC-CCCHHHHHHHTTCEEE
T ss_pred hchHHHHHHHHHHhCCCeEEEEEECCCcccccchhhhc-chhHHHHHHHCCCeEE
Confidence 99999999999999998 89999999999999988764 6778777753 4444
No 17
>2e6k_A Transketolase; structural genomics, NPPSFA, national project protein structural and functional analyses; 2.09A {Thermus thermophilus}
Probab=99.74 E-value=5.4e-18 Score=166.22 Aligned_cols=171 Identities=17% Similarity=0.178 Sum_probs=116.3
Q ss_pred HHHHhHHHHHHHHHHhcCcccccccCcchHHHHHHHHhccC---------CCCeEecCCccchh------hhhcCC--CH
Q 026778 45 MVTLQTMDTIFYEAQRQGRISFYLTTSGEEAINIASAAAIK---------NDDFVVPQYREPGV------LLWRGF--SM 107 (233)
Q Consensus 45 M~~~R~~d~~~~~l~r~G~i~~~~~~~GqEa~~vg~~~aL~---------~~D~~~~~yR~~~~------~l~rG~--~~ 107 (233)
...+|.+-..+......|+++...+.. |.+.+.....|+ +.|.++.+ -+|+. +...|. +.
T Consensus 12 a~~iR~~~~~~v~~a~~GH~g~~l~~~--~i~~~L~~~~~~~~p~~p~~~~rDr~vls-~GH~~~~lYa~l~l~G~~~~~ 88 (651)
T 2e6k_A 12 VNAIRFLAIDAVEKARSGHPGMPMGMA--PLAYLLFREVMRHNPLDPDWPDRDRFVLS-AGHGSMLLYAVLHLTGYDLPL 88 (651)
T ss_dssp HHHHHHHHHHHHHHHTCSCCHHHHHHH--HHHHHHHHTTCCCCTTCTTCTTSCEEEES-SGGGHHHHHHHHHHTTCSCCH
T ss_pred HHHHHHHHHHHHHHcCCCccCcchhHH--HHHHHHHHHHhcCCccCCCCCCCCeEEEe-CcchhHHHHHHHHHhCCCCCH
Confidence 344565544444444566655443332 333322222243 23776655 35553 334565 44
Q ss_pred HHHHHHHhcCCCCCCCCCCCCcccCC-CccccccccccCCCCchhhhHHHHHhhhcC----------CCCeEEEEEcCCc
Q 026778 108 QEFANQCFGNKADYGKGRQMPIHYGS-NKHNYFTVSSTIATQLPHAVGAAYALKMDR----------KDACAVTYFGDGG 176 (233)
Q Consensus 108 ~~~l~e~~g~~~g~~~Gr~~~~H~~~-~~~~~~~~~g~lG~~~~~A~G~A~a~k~~~----------~~~vvv~~~GDG~ 176 (233)
++ |.. |-+.++. .+.|... ...++...+|++|+++|.|+|+|+|.++++ .++.|+|++|||+
T Consensus 89 ~~-l~~-~r~~~~~-----~~ghp~~~~~~g~~~~~G~lG~gl~~AvG~A~A~~~~~~~~~~~~~~~~~~~v~~~~GDG~ 161 (651)
T 2e6k_A 89 EE-LKS-FRQWGSK-----TPGHPERGHTPGVEVTTGPLGQGISTAVGLALAERKLAAEFNRPGHVVVDHYTYVLASDGD 161 (651)
T ss_dssp HH-HTT-TTSTTCS-----CCSSCCBTTBTTCCSCCCSTTHHHHHHHHHHHHHHHHHHHHCBTTBCCCCCCEEEEECHHH
T ss_pred HH-HHH-hhccCCC-----CCCCCCCCCCCCeeeccccccchHHHHHHHHHHHHhhcccccccccCCCCCEEEEEEChhh
Confidence 44 322 3222221 1334432 235888999999999999999999999766 6889999999999
Q ss_pred cchhhHHHHHHHHHHcCCC-EEEEEecCCccccccccccccCCCchhhhcc
Q 026778 177 TSEGDFHAALNFSAVTEAP-VIFICRNNGWAISTPISDQFRSIPSLPCLSN 226 (233)
Q Consensus 177 ~~~G~~~Ealn~A~~~~lP-vvfvv~nN~~ais~~~~~q~~~~~~~~~~~~ 226 (233)
+++|.+|||+|+|+.++|| +||||+||+|+|++++..++ .+++++++++
T Consensus 162 ~~eG~~~Eal~~A~~~~L~~li~i~~nN~~~i~~~~~~~~-~~d~~~~~~a 211 (651)
T 2e6k_A 162 LMEGVSGEAASLAGHWGLSKLIVFWDDNRISIDGPTDLAF-TEDVLARYRA 211 (651)
T ss_dssp HHSHHHHHHHHHHHHTTCTTEEEEEEECCEETTEEGGGTC-CSCHHHHHHH
T ss_pred hchhHHHHHHHHHHHcCCCeEEEEEECCCccccccccccc-CccHHHHHHh
Confidence 9999999999999999998 99999999999999998876 6777776654
No 18
>3l84_A Transketolase; TKT, structural genomics, center for structur genomics of infectious diseases, csgid, transferase; HET: MSE; 1.36A {Campylobacter jejuni} PDB: 3m6l_A* 3m34_A* 3m7i_A*
Probab=99.74 E-value=4.4e-18 Score=166.50 Aligned_cols=170 Identities=19% Similarity=0.208 Sum_probs=120.2
Q ss_pred HHHHhHHHHHHHHHHhcCcccccccCcchHHHHHHHHhccC---------CCCeEecCCccch------hhhhcCC--CH
Q 026778 45 MVTLQTMDTIFYEAQRQGRISFYLTTSGEEAINIASAAAIK---------NDDFVVPQYREPG------VLLWRGF--SM 107 (233)
Q Consensus 45 M~~~R~~d~~~~~l~r~G~i~~~~~~~GqEa~~vg~~~aL~---------~~D~~~~~yR~~~------~~l~rG~--~~ 107 (233)
...+|.+-..+......|+++...+.. |.+. ++...|+ +.|.++.+ -+|+ ++...|. +.
T Consensus 10 a~~iR~~~i~~v~~a~~GH~g~~lg~~--ei~~-~L~~~~~~~p~~p~~~~rDrfvls-~GH~~~~lYa~l~l~G~~~~~ 85 (632)
T 3l84_A 10 ANTLRFLSADMVQKANSGHPGAPLGLA--DILS-VLSYHLKHNPKNPTWLNRDRLVFS-GGHASALLYSFLHLSGYDLSL 85 (632)
T ss_dssp HHHHHHHHHHHHHHHTCSCCHHHHHHH--HHHH-HHTTTCCCCTTCTTCTTSCEEEES-SGGGHHHHHHHHHHHTCSCCH
T ss_pred HHHHHHHHHHHHHhcCCCCCCcChhHH--HHHH-HHHHHhCcCCCCCCCCCCCEEEEc-CCcccHHHHHHHHHhCCCCCH
Confidence 445566655554444456655443332 4333 3355565 46888776 3555 3344564 55
Q ss_pred HHHHHHHhcCCCCCCCCCCCCcccCCCccccccccccCCCCchhhhHHHHHhhhcCC-------CCeEEEEEcCCccchh
Q 026778 108 QEFANQCFGNKADYGKGRQMPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRK-------DACAVTYFGDGGTSEG 180 (233)
Q Consensus 108 ~~~l~e~~g~~~g~~~Gr~~~~H~~~~~~~~~~~~g~lG~~~~~A~G~A~a~k~~~~-------~~vvv~~~GDG~~~~G 180 (233)
+++ .. |-+.++. .+.|......++...+|++|+++|.|+|+|+|.++++. ++.|+|++|||++++|
T Consensus 86 ~~l-~~-~r~~~s~-----~~ghp~~~~~g~~~~tG~lG~gl~~AvG~AlA~~~~~~~~n~~~~d~~v~~v~GDG~~~eG 158 (632)
T 3l84_A 86 EDL-KN-FRQLHSK-----TPGHPEISTLGVEIATGPLGQGVANAVGFAMAAKKAQNLLGSDLIDHKIYCLCGDGDLQEG 158 (632)
T ss_dssp HHH-TT-TTCTTCS-----SCSSCCTTSTTCCSCCCSTTHHHHHHHHHHHHHHHHHHHHCTTTCCCCEEEEEEHHHHHSH
T ss_pred HHH-HH-HhcCCCC-----CCCCCCCCCCCcccCCcchhhHHHHHHHHHHHHHhhccccccCCCCCeEEEEECCcchhhc
Confidence 553 22 3333222 23454444568888999999999999999999998764 8899999999999999
Q ss_pred hHHHHHHHHHHcCCC-EEEEEecCCccccccccccccCCCchhhhcc
Q 026778 181 DFHAALNFSAVTEAP-VIFICRNNGWAISTPISDQFRSIPSLPCLSN 226 (233)
Q Consensus 181 ~~~Ealn~A~~~~lP-vvfvv~nN~~ais~~~~~q~~~~~~~~~~~~ 226 (233)
.+|||+|+|+.++|| +|+|++||+|+|+.++.... .+++++++++
T Consensus 159 ~~~Eal~~A~~~~L~~livi~nnN~~~i~~~~~~~~-~~d~~~~~~a 204 (632)
T 3l84_A 159 ISYEACSLAGLHKLDNFILIYDSNNISIEGDVGLAF-NENVKMRFEA 204 (632)
T ss_dssp HHHHHHHHHHHTTCTTEEEEEEECSEETTEEGGGTC-CCCHHHHHHH
T ss_pred cHHHHHHHHHHcCCCcEEEEEECCCcccccchhhhc-ChhHHHHHHH
Confidence 999999999999997 89999999999999987764 5777777654
No 19
>3uk1_A Transketolase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, thiamine pyrophosphate; 2.15A {Burkholderia thailandensis} PDB: 3upt_A*
Probab=99.73 E-value=1e-17 Score=165.86 Aligned_cols=176 Identities=18% Similarity=0.205 Sum_probs=124.3
Q ss_pred HHHHhHHHHHHHHHHhcCcccccccCcchHHHHHHHHhccC---------CCCeEecCCccchh------hhhcCC--CH
Q 026778 45 MVTLQTMDTIFYEAQRQGRISFYLTTSGEEAINIASAAAIK---------NDDFVVPQYREPGV------LLWRGF--SM 107 (233)
Q Consensus 45 M~~~R~~d~~~~~l~r~G~i~~~~~~~GqEa~~vg~~~aL~---------~~D~~~~~yR~~~~------~l~rG~--~~ 107 (233)
...+|.+-..+......|.++...++. |.+.+.....|+ +.|.++.+ -+|+. +...|. +.
T Consensus 49 a~~iR~~~i~~v~~a~~GH~g~~l~~a--ei~~~L~~~~~~~~~~~p~~~~rDrfvls-~GH~s~~lYa~l~l~G~~~~~ 125 (711)
T 3uk1_A 49 ANAIRALAMDAVQQANSGHPGMPMGMA--EIGVALWSRHLKHNPTNPHWADRDRFVLS-NGHGSMLLYSLLHLTGYDLPI 125 (711)
T ss_dssp HHHHHHHHHHHHHHHTCSCCHHHHHTH--HHHHHHHHHTCCCCTTCTTCTTCCEEEEC-SGGGHHHHHHHHHHHTCSCCH
T ss_pred HHHHHHHHHHHHHhcCCCccCchHHHH--HHHHHHHhhhEeeCCCCCCCCCCCeEEEe-CCcccHHHHHHHHHhCCCCCH
Confidence 334565554444444567766555554 555444433554 35888766 46664 334565 55
Q ss_pred HHHHHHHhcCCCCCCCCCCCCcccCC-CccccccccccCCCCchhhhHHHHHhhhcCC----------CCeEEEEEcCCc
Q 026778 108 QEFANQCFGNKADYGKGRQMPIHYGS-NKHNYFTVSSTIATQLPHAVGAAYALKMDRK----------DACAVTYFGDGG 176 (233)
Q Consensus 108 ~~~l~e~~g~~~g~~~Gr~~~~H~~~-~~~~~~~~~g~lG~~~~~A~G~A~a~k~~~~----------~~vvv~~~GDG~ 176 (233)
+++ .. |-+.++.+ +.|... ...|+...+|++|+++|.|+|+|+|.++++. ++.|+|++|||+
T Consensus 126 ~~l-~~-~r~~~s~~-----~ghp~~~~~~gve~~tG~lG~gl~~AvG~AlA~~~~~~~~n~~~~~~~d~~vv~i~GDG~ 198 (711)
T 3uk1_A 126 EEL-KN-FRQLHSKT-----PGHPEYGITPGVETTTGPLGQGLANAVGMALGEALLAAEFNRDDAKIVDHHTYVFLGDGC 198 (711)
T ss_dssp HHH-HT-TTSTTCSC-----CSSCCTTTSTTCCSCCCSTTHHHHHHHHHHHHHHHHHHHHCBTTBCCCCCCEEEEECHHH
T ss_pred HHH-Hh-hccccCCC-----CCCCCCCCCCCcccCccchhhHHHHHHHHHHHHHhhcccccccccccCCCeEEEEECCcc
Confidence 553 32 43332222 345432 3468888999999999999999999998764 789999999999
Q ss_pred cchhhHHHHHHHHHHcCCC-EEEEEecCCccccccccccccCCCchhhhc--cccccc
Q 026778 177 TSEGDFHAALNFSAVTEAP-VIFICRNNGWAISTPISDQFRSIPSLPCLS--NILTIL 231 (233)
Q Consensus 177 ~~~G~~~Ealn~A~~~~lP-vvfvv~nN~~ais~~~~~q~~~~~~~~~~~--~~~~~~ 231 (233)
+++|.+||+||+|+.++|| +|+|++||+|+|+.++..+. .++++++++ +|+.+.
T Consensus 199 l~eG~~~Eal~~A~~~~L~~livI~dnN~~~i~~~~~~~~-~~d~~~~~~a~G~~~~~ 255 (711)
T 3uk1_A 199 LMEGISHEACSLAGTLKLNKLIALYDDNGISIDGDVVNWF-HDDTPKRFEAYGWNVIP 255 (711)
T ss_dssp HHSHHHHHHHHHHHHTTCTTEEEEEEECSEETTEEGGGTC-CCCHHHHHHHTTCEEEE
T ss_pred hhhccHHHHHHHHHHhCCCcEEEEEECCCcccccchhhhc-CCCHHHHHHHcCCcEEE
Confidence 9999999999999999998 99999999999999988774 577877775 455443
No 20
>2r8o_A Transketolase 1, TK 1; reaction intermediate, calcium, metal-binding, thiamine pyrophosphate, transferase; HET: T5X; 1.47A {Escherichia coli K12} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 PDB: 2r5n_A* 2r8p_A* 1qgd_A*
Probab=99.72 E-value=1.5e-17 Score=163.59 Aligned_cols=171 Identities=18% Similarity=0.233 Sum_probs=117.5
Q ss_pred HHHHhHHHHHHHHHHhcCcccccccCcchHHHHHHHHhccC--C-------CCeEecCCccchh------hhhcCC--CH
Q 026778 45 MVTLQTMDTIFYEAQRQGRISFYLTTSGEEAINIASAAAIK--N-------DDFVVPQYREPGV------LLWRGF--SM 107 (233)
Q Consensus 45 M~~~R~~d~~~~~l~r~G~i~~~~~~~GqEa~~vg~~~aL~--~-------~D~~~~~yR~~~~------~l~rG~--~~ 107 (233)
...+|.+-..+......|.++...+.. |.+.+.....|+ | .|.++.+ -+|+. +...|. +.
T Consensus 8 a~~iR~~~~~~v~~a~~GH~g~~l~~~--~i~~~L~~~~~~~~~~~p~~~~rDr~v~s-~GH~~~~lYa~~~l~G~~~~~ 84 (669)
T 2r8o_A 8 ANAIRALSMDAVQKAKSGHPGAPMGMA--DIAEVLWRDFLKHNPQNPSWADRDRFVLS-NGHGSMLIYSLLHLTGYDLPM 84 (669)
T ss_dssp HHHHHHHHHHHHHHHTCSCCHHHHHHH--HHHHHHHHHTCCCCTTCTTCTTCCEEEES-SGGGHHHHHHHHHHHTCSCCH
T ss_pred HHHHHHHHHHHHHHcCCCccCCchhHH--HHHHHHHHHhhcCCcCCCCCCCCCeEEEe-CccHHHHHHHHHHHcCCCCCH
Confidence 344566555555444566665544332 333332223343 3 4776665 35653 344454 55
Q ss_pred HHHHHHHhcCCCCCCCCCCCCcccCCC-ccccccccccCCCCchhhhHHHHHhhhcC----------CCCeEEEEEcCCc
Q 026778 108 QEFANQCFGNKADYGKGRQMPIHYGSN-KHNYFTVSSTIATQLPHAVGAAYALKMDR----------KDACAVTYFGDGG 176 (233)
Q Consensus 108 ~~~l~e~~g~~~g~~~Gr~~~~H~~~~-~~~~~~~~g~lG~~~~~A~G~A~a~k~~~----------~~~vvv~~~GDG~ 176 (233)
+++ .. |-+.++ ..+.|.... ..++...+|++|+++|.|+|+|+|.++++ .++.|+|++|||+
T Consensus 85 ~~l-~~-~r~~~~-----~~~ghp~~~~~~g~~~~~G~lG~gl~~AvG~AlA~~~~~~~~n~~~~~~~~~~v~~~~GDG~ 157 (669)
T 2r8o_A 85 EEL-KN-FRQLHS-----KTPGHPEVGYTAGVETTTGPLGQGIANAVGMAIAEKTLAAQFNRPGHDIVDHYTYAFMGDGC 157 (669)
T ss_dssp HHH-TT-TTSTTC-----SCCSSCCTTTSTTCCSCCCSTTHHHHHHHHHHHHHHHHHHHHCBTTBCCCCCCEEEEECHHH
T ss_pred HHH-HH-hhcCCC-----CCCCCCCccCCCCcccccccccchHHHHHHHHHHHHHhccccccCccCCcCCeEEEEECHhH
Confidence 543 22 333222 123465322 46889999999999999999999998765 4789999999999
Q ss_pred cchhhHHHHHHHHHHcCCC-EEEEEecCCccccccccccccCCCchhhhcc
Q 026778 177 TSEGDFHAALNFSAVTEAP-VIFICRNNGWAISTPISDQFRSIPSLPCLSN 226 (233)
Q Consensus 177 ~~~G~~~Ealn~A~~~~lP-vvfvv~nN~~ais~~~~~q~~~~~~~~~~~~ 226 (233)
+++|++|||+|+|+.++|| +||||+||+|+|+.++..+. .+++++++++
T Consensus 158 ~~eG~~~Eal~~A~~~~L~~li~i~~nN~~~i~~~~~~~~-~~d~~~~~~a 207 (669)
T 2r8o_A 158 MMEGISHEVCSLAGTLKLGKLIAFYDDNGISIDGHVEGWF-TDDTAMRFEA 207 (669)
T ss_dssp HHSHHHHHHHHHHHHTTCTTEEEEEEECSEETTEEGGGTC-CCCHHHHHHH
T ss_pred hcchHHHHHHHHHHHcCCCcEEEEEECCCcEecccccccc-CccHHHHHHH
Confidence 9999999999999999998 99999999999999988765 5677766654
No 21
>2qtc_A Pyruvate dehydrogenase E1 component; thiamin diphosphate, glycolysis, MAG metal-binding, oxidoreductase, thiamine pyrophosphate; HET: TDK; 1.77A {Escherichia coli} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 PDB: 2qta_A* 1l8a_A* 1rp7_A* 2g25_A* 2g28_A* 2g67_A 2iea_A* 3lpl_A* 3lq2_A* 3lq4_A*
Probab=99.72 E-value=2e-17 Score=167.05 Aligned_cols=178 Identities=13% Similarity=0.128 Sum_probs=121.9
Q ss_pred HHHHhHHHHHHHHH-Hh-----cCcccccccCcchHHHHHHHHhccC------CCCeEecCCccchh------hhhcCCC
Q 026778 45 MVTLQTMDTIFYEA-QR-----QGRISFYLTTSGEEAINIASAAAIK------NDDFVVPQYREPGV------LLWRGFS 106 (233)
Q Consensus 45 M~~~R~~d~~~~~l-~r-----~G~i~~~~~~~GqEa~~vg~~~aL~------~~D~~~~~yR~~~~------~l~rG~~ 106 (233)
...+|.+-..+... .+ .|+++.+.+.. |...++....++ ++|.|+.. +|+. ++..|.-
T Consensus 82 a~~iR~~~i~~v~~a~~~~~~~gGH~gs~ls~a--el~~~l~~~~~~~~~~~~~~D~V~~~--GH~sp~~Ya~~~l~Gr~ 157 (886)
T 2qtc_A 82 RSAIRWNAIMTVLRASKKDLELGGHMASFQSSA--TIYDVCFNHFFRARNEQDGGDLVYFQ--GHISPGVYARAFLEGRL 157 (886)
T ss_dssp HHHHHHHHHHHHHHHHHTCSCCCCCSHHHHHHH--HHHHHHHHHTCCCCCSSSCCCEEECC--GGGHHHHHHHHHHTTSS
T ss_pred HHHHHHHHHHHHHHhcCCCCCCccCcCCcHHHH--HHHHHHHHHhcCCCCCCCCCCEEEEc--chhHHHHHHHHHHhCCC
Confidence 34456554444333 22 47777666655 776666556577 57866665 5554 6677864
Q ss_pred HHHHHHHHhcCCCCCCCCCCCCcccCCC--ccccccccccCCCCchhhhHHHHHhhh-------cCCCCeEEEEEcCCcc
Q 026778 107 MQEFANQCFGNKADYGKGRQMPIHYGSN--KHNYFTVSSTIATQLPHAVGAAYALKM-------DRKDACAVTYFGDGGT 177 (233)
Q Consensus 107 ~~~~l~e~~g~~~g~~~Gr~~~~H~~~~--~~~~~~~~g~lG~~~~~A~G~A~a~k~-------~~~~~vvv~~~GDG~~ 177 (233)
..+-|.. |-+... +.+.|.|.... +.++...+|++|++++.|+|+|++.|+ ++.++.|+|++|||++
T Consensus 158 ~~e~l~~-fRq~~~---~~gl~~~p~~~~~p~~~~~~tG~~G~g~s~AiG~A~a~~~l~~~~~~~~~~~~v~aviGDG~l 233 (886)
T 2qtc_A 158 TQEQLDN-FRQEVH---GNGLSSYPHPKLMPEFWQFPTVSMGLGPIGAIYQAKFLKYLEHRGLKDTSKQTVYAFLGDGEM 233 (886)
T ss_dssp CHHHHTT-BTCCTT---SSCBCSSCCTTTSTTTCCCCCCSTTHHHHHHHHHHHHHHHHHHTTSCCCTTCCEEEEEETGGG
T ss_pred CHHHHHh-ccCCCC---CCCCCCCCCcccCCCcccccccccCccHHHHHHHHHHhhhhcccccccCCCCEEEEEECCccc
Confidence 3333443 322211 12233332211 124778899999999999999999998 7889999999999999
Q ss_pred chhhHHHHHHHHHHcCCC-EEEEEecCCccccccccccc-cCCCchhhhc--ccccc
Q 026778 178 SEGDFHAALNFSAVTEAP-VIFICRNNGWAISTPISDQF-RSIPSLPCLS--NILTI 230 (233)
Q Consensus 178 ~~G~~~Ealn~A~~~~lP-vvfvv~nN~~ais~~~~~q~-~~~~~~~~~~--~~~~~ 230 (233)
++|++|||||+|+.++|| +||||+||+|+|+.|+.... ..+.+..++. +|..|
T Consensus 234 ~eG~~~EAl~~A~~~~L~nli~Vvn~N~~si~~~v~~~~~~~~~l~~~~~~~G~~~~ 290 (886)
T 2qtc_A 234 DEPESKGAITIATREKLDNLVFVINCNLQRLDGPVTGNGKIINELEGIFEGAGWNVI 290 (886)
T ss_dssp GSHHHHTTHHHHHHTTCTTEEEEEEECSBCSSSBSCTTSCHHHHHHHHHHHTTCEEE
T ss_pred cccchHHHHHHHHHcCCCcEEEEEECCCcccCCCccccccccHHHHHHHHhCCCCEE
Confidence 999999999999999996 99999999999999988642 3455555553 34444
No 22
>3m49_A Transketolase; alpha-beta-alpha sandwich, csgid, transferase, structural genomics, center for structural genomics of infectious diseases; HET: MSE TDP PG5 TRS BTB; 2.00A {Bacillus anthracis} PDB: 3hyl_A*
Probab=99.71 E-value=2.7e-17 Score=162.39 Aligned_cols=174 Identities=18% Similarity=0.184 Sum_probs=121.1
Q ss_pred HHhHHHHHHHHHHhcCcccccccCcchHHHHHHHHhccC---------CCCeEecCCccchh------hhhcC--CCHHH
Q 026778 47 TLQTMDTIFYEAQRQGRISFYLTTSGEEAINIASAAAIK---------NDDFVVPQYREPGV------LLWRG--FSMQE 109 (233)
Q Consensus 47 ~~R~~d~~~~~l~r~G~i~~~~~~~GqEa~~vg~~~aL~---------~~D~~~~~yR~~~~------~l~rG--~~~~~ 109 (233)
.+|.+-..+......|.++...++. |.+.+.....|+ +.|.++.+ .+|+. +...| ++.++
T Consensus 36 ~iR~~~~~~v~~a~~GH~g~~l~~~--~i~~~L~~~~l~~~p~~p~~~~rDrfvls-~GH~~~~lYa~l~l~G~~~~~~~ 112 (690)
T 3m49_A 36 TIRTLSIDAIEKANSGHPGMPMGAA--PMAYTLWTQFMKHNPNNPTWFNRDRFVLS-AGHGSMLLYSLLHLSGYDVTMDD 112 (690)
T ss_dssp HHHHHHHHHHHHHTCSCCHHHHHHH--HHHHHHHHHTCCCCTTCTTCTTSCEEEES-SGGGHHHHHHHHHHTTSSCCHHH
T ss_pred HHHHHHHHHHHhcCCCCCCcchHHH--HHHHHHHHHHhcCCCCCCCCCCCCeEEEC-CccHHHHHHHHHHHHCCCCCHHH
Confidence 4565555554444556665444333 444443334666 46887766 36653 33456 45666
Q ss_pred HHHHHhcCCCCCCCCCCCCcccCC-CccccccccccCCCCchhhhHHHHHhhhcCC----------CCeEEEEEcCCccc
Q 026778 110 FANQCFGNKADYGKGRQMPIHYGS-NKHNYFTVSSTIATQLPHAVGAAYALKMDRK----------DACAVTYFGDGGTS 178 (233)
Q Consensus 110 ~l~e~~g~~~g~~~Gr~~~~H~~~-~~~~~~~~~g~lG~~~~~A~G~A~a~k~~~~----------~~vvv~~~GDG~~~ 178 (233)
+. . |-+. |...+.|... ...++...+|++|+++|.|+|+|+|.|+++. ++.|+|++|||+++
T Consensus 113 l~-~-~rq~-----gs~~~Ghp~~~~~pgv~~~tG~lG~gl~~AvG~AlA~~~~~~~~n~~~~~~~d~~v~~i~GDG~l~ 185 (690)
T 3m49_A 113 LK-N-FRQW-----GSKTPGHPEYGHTAGVDATTGPLGQGIATAVGMAMAERHLAAKYNRDAYNIVDHYTYAICGDGDLM 185 (690)
T ss_dssp HT-T-TTCT-----TCSSCSSCCTTTSTTCCSCCCSTTHHHHHHHHHHHHHHHHHHHHCBTTBCCSCCCEEEEECHHHHH
T ss_pred HH-h-hccC-----CCCCCCCCCCCCCCccccCCccccccHHHHHHHHHHHHHhhccccccccccCCCeEEEEECchhhh
Confidence 32 2 3222 2222345433 3467888999999999999999999997653 88999999999999
Q ss_pred hhhHHHHHHHHHHcCCC-EEEEEecCCccccccccccccCCCchhhhc--cccccc
Q 026778 179 EGDFHAALNFSAVTEAP-VIFICRNNGWAISTPISDQFRSIPSLPCLS--NILTIL 231 (233)
Q Consensus 179 ~G~~~Ealn~A~~~~lP-vvfvv~nN~~ais~~~~~q~~~~~~~~~~~--~~~~~~ 231 (233)
+|.+|||+++|+.++|| +|+|++||+|+|+.++... ..++++++++ +|+.+.
T Consensus 186 eG~~~Eal~~A~~~~L~~livI~dnN~~~i~~~~~~~-~~~d~~~~~~a~G~~~~~ 240 (690)
T 3m49_A 186 EGVSAEASSLAAHLQLGRLVVLYDSNDISLDGDLNRS-FSESVEDRYKAYGWQVIR 240 (690)
T ss_dssp SHHHHHHHHHHHHTTCTTEEEEEEECSBCSSSBGGGT-CCCCHHHHHHHHTCEEEE
T ss_pred hccHHHHHHHHHHhCCCeEEEEEECCCeecccchhhc-cchhHHHHHHHcCCcEEE
Confidence 99999999999999997 8999999999999998765 4577777765 344443
No 23
>3ahc_A Phosphoketolase, xylulose 5-phosphate/fructose 6-phosphate phospho; thiamine diphosphate-dependent enzyme, alpha-beta fold; HET: TPP 2PE; 1.70A {Bifidobacterium breve} PDB: 3ahd_A* 3ahe_A* 3ahf_A* 3ahj_A* 3ahi_A* 3ahh_A* 3ahg_A* 3ai7_A*
Probab=99.13 E-value=1.8e-11 Score=122.83 Aligned_cols=97 Identities=18% Similarity=0.252 Sum_probs=84.8
Q ss_pred CCcccCCCccccccccccCCCCchhhhHHHHHhhhcCCCCeEEEEEcCCccchhh---HHHHHHHHHHcCC-CEEEEEec
Q 026778 127 MPIHYGSNKHNYFTVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGD---FHAALNFSAVTEA-PVIFICRN 202 (233)
Q Consensus 127 ~~~H~~~~~~~~~~~~g~lG~~~~~A~G~A~a~k~~~~~~vvv~~~GDG~~~~G~---~~Ealn~A~~~~l-Pvvfvv~n 202 (233)
.+.|....-.|+...+|+||+++++|+|+|+ .+.+..|+|++|||+..+|. .||+.++|..+++ +++.|+++
T Consensus 159 ~pgHp~~~tpGve~~tG~LGqGls~AvG~A~----~~~~~~v~~~~GDGe~e~GsLAg~wea~~~~~~~~l~nl~~i~D~ 234 (845)
T 3ahc_A 159 IPSHFAPETPGSIHEGGELGYALSHAYGAVM----NNPSLFVPCIIGDGEAETGPLATGWQSNKLVNPRTDGIVLPILHL 234 (845)
T ss_dssp BCSSCCTTSTTCSCCCSSTTCHHHHHHHHHT----TCTTCEEEEEEETTGGGSHHHHHHGGGGGSCCTTTSCEEEEEEEE
T ss_pred CCCCCCCCCCCeecCCCCccchHhHHhhhhh----cCCCCeEEEEECCCchhhhcchhhhHHhhhhhhhcCCCEEEEEEC
Confidence 5678755557999999999999999999994 46678999999999999999 9999999999999 58889999
Q ss_pred CCccccccccc-cccCCCchhhhccc
Q 026778 203 NGWAISTPISD-QFRSIPSLPCLSNI 227 (233)
Q Consensus 203 N~~ais~~~~~-q~~~~~~~~~~~~~ 227 (233)
|+++|+.|+.. .+..+++.+|+.++
T Consensus 235 N~~~i~g~t~l~~~~~e~l~~rf~a~ 260 (845)
T 3ahc_A 235 NGYKIANPTILARISDEELHDFFRGM 260 (845)
T ss_dssp CSBSSSSBCHHHHSCHHHHHHHHHHT
T ss_pred CCCcCCCCccccccCcHHHHHHHHHC
Confidence 99999999974 35678888888763
No 24
>4feg_A Pyruvate oxidase; carbanion, structure activity relationship, oxidation-reduct umpolung, thiamine diphosphate, reaction intermediate; HET: TDM FAD GOL; 1.09A {Lactobacillus plantarum} PDB: 4fee_A* 1y9d_A* 2ez9_A* 2ez4_A* 2ez8_A* 2ezt_A* 2ezu_A* 1pow_A* 1pox_A*
Probab=98.90 E-value=4.8e-10 Score=108.40 Aligned_cols=60 Identities=23% Similarity=0.322 Sum_probs=50.2
Q ss_pred cccCCCCchhhhHHHHHhhhcCCCCeEEEEEcCCccchhhHHHHHHHHHHcCCCEEEEEecC-Cccc
Q 026778 142 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNN-GWAI 207 (233)
Q Consensus 142 ~g~lG~~~~~A~G~A~a~k~~~~~~vvv~~~GDG~~~~G~~~Ealn~A~~~~lPvvfvv~nN-~~ai 207 (233)
.+++|.++|.|+|++++. +++.|+|++|||+++++ +++|++|+.+++|+++||.|| +|++
T Consensus 419 ~g~~G~~l~~A~Gaala~----~~~~vv~~~GDG~~~~~--~~~l~~a~~~~lp~~~vv~nN~~~~~ 479 (603)
T 4feg_A 419 FATMGVGIPGAIAAKLNY----PERQVFNLAGDGGASMT--MQDLATQVQYHLPVINVVFTNCQYGF 479 (603)
T ss_dssp SCCTTCHHHHHHHHHHHC----TTSCEEEEEEHHHHHHH--GGGHHHHHHTTCCCEEEEEECSBCHH
T ss_pred cccccchhHHHhhHHHhC----CCCcEEEEeccHHHhhh--HHHHHHHHHHCcCeEEEEEECCchHH
Confidence 567888788788877775 46789999999999987 777999999999988888777 5987
No 25
>2vk8_A Pyruvate decarboxylase isozyme 1; asymmetric active sites, phenylalanine catabolism, tryptophan catabolism, thiamine pyrophosphate; HET: TPP; 1.42A {Saccharomyces cerevisiae} PDB: 1qpb_A* 2vk1_A* 2w93_A* 1pyd_A* 1pvd_A* 2vk4_A* 2vjy_A* 2g1i_A*
Probab=98.88 E-value=3.9e-10 Score=107.84 Aligned_cols=68 Identities=18% Similarity=0.203 Sum_probs=59.4
Q ss_pred ccccCCCCchhhhHHHHHhhhcCCCCeEEEEEcCCccchhhHHHHHHHHHHcCCCEEEEEecC-Ccccccc
Q 026778 141 VSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNN-GWAISTP 210 (233)
Q Consensus 141 ~~g~lG~~~~~A~G~A~a~k~~~~~~vvv~~~GDG~~~~G~~~Ealn~A~~~~lPvvfvv~nN-~~ais~~ 210 (233)
..+.+|.++|.|+|+|+|.+.+++++.|+|++|||++..+ +++|++|+.+++|+++||.|| +|+|...
T Consensus 411 ~~g~mG~~l~~A~Gaala~~~~~~~~~vv~~~GDG~~~~~--~~el~ta~~~~l~~~ivv~nN~~~~~~~~ 479 (563)
T 2vk8_A 411 LWGSIGFTTGATLGAAFAAEEIDPKKRVILFIGDGSLQLT--VQEISTMIRWGLKPYLFVLNNDGYTIQKL 479 (563)
T ss_dssp TTCCTTHHHHHHHHHHHHHHHHCTTCCEEEEEEHHHHHHH--GGGHHHHHHTTCCCEEEEEESSSCHHHHH
T ss_pred chhhhhhHHHHHHHHHHhCcccCCCCCEEEEEcchHhhcc--HHHHHHHHHcCCCcEEEEEECCcchhhhh
Confidence 5689999999999999999988888999999999999886 788999999999977766555 6998653
No 26
>1q6z_A BFD, BFDC, benzoylformate decarboxylase; lyase, carbon-carbon, mandelate catabolism, T thiazolone diphosphate, inhibitor, high resolution; HET: TZD; 1.00A {Pseudomonas putida} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1po7_A* 1pi3_A* 3fsj_X* 1mcz_A* 1bfd_A* 2fwn_A* 3fzn_A* 2fn3_A* 2v3w_A* 1yno_A* 3f6b_X* 3f6e_X*
Probab=98.77 E-value=1.4e-09 Score=103.14 Aligned_cols=63 Identities=25% Similarity=0.348 Sum_probs=54.9
Q ss_pred ccCCCCchhhhHHHHHhhhcCCCCeEEEEEcCCccchhhHHHHHHHHHHcCCCEEEEEecC-Cccccccc
Q 026778 143 STIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNN-GWAISTPI 211 (233)
Q Consensus 143 g~lG~~~~~A~G~A~a~k~~~~~~vvv~~~GDG~~~~G~~~Ealn~A~~~~lPvvfvv~nN-~~ais~~~ 211 (233)
+.+|.++|.|+|+|+|.+ ++.|+|++|||++..+ +++|++|+.+++|+++||.|| +|++....
T Consensus 401 g~~G~~l~~A~G~a~a~~----~~~vv~~~GDG~~~~~--~~~l~~a~~~~l~~~ivv~nN~~~~~~~~~ 464 (528)
T 1q6z_A 401 GGLGFALPAAIGVQLAEP----ERQVIAVIGDGSANYS--ISALWTAAQYNIPTIFVIMNNGTYGALRWF 464 (528)
T ss_dssp CCTTSHHHHHHHHHHHCT----TSCEEEEEEHHHHTTT--GGGHHHHHHHTCCCEEEEEECSBCHHHHHH
T ss_pred ccccchHHHHHHHHHhCC----CCcEEEEECCcHHHhh--HHHHHHHHHhCCCeEEEEEeCCcchHhHHH
Confidence 899999999999999863 5679999999999998 899999999999988877666 69997654
No 27
>2uz1_A Benzaldehyde lyase; thiamine diphosphate, thiamine pyrophosphate, benzoin, flavoprotein; HET: TPP; 1.65A {Pseudomonas fluorescens} PDB: 2ag1_A* 2ag0_A* 2uz1_B* 3iae_A* 3iaf_A* 3d7k_A*
Probab=98.73 E-value=3e-09 Score=101.78 Aligned_cols=66 Identities=18% Similarity=0.271 Sum_probs=56.6
Q ss_pred ccccCCCCchhhhHHHHHhhhcCCCCeEEEEEcCCccchhhHHHHHHHHHHcCCCEEEEE-ecCCcccccc
Q 026778 141 VSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFIC-RNNGWAISTP 210 (233)
Q Consensus 141 ~~g~lG~~~~~A~G~A~a~k~~~~~~vvv~~~GDG~~~~G~~~Ealn~A~~~~lPvvfvv-~nN~~ais~~ 210 (233)
..+.+|.++|.|+|+|+|.| +.++.|+|++|||++..+ +++|++|..+++|+++|| +||+|++...
T Consensus 417 g~g~~G~~l~~AiGaa~a~~--~~~~~vv~i~GDG~~~~~--~~~L~ta~~~~l~~~ivv~nN~~~~~~~~ 483 (563)
T 2uz1_A 417 YLGSMGVGFGTALGAQVADL--EAGRRTILVTGDGSVGYS--IGEFDTLVRKQLPLIVIIMNNQSWGATLH 483 (563)
T ss_dssp TTCCTTTHHHHHHHHHHHHH--HHTCEEEEEEEHHHHGGG--TTHHHHHHHHTCCCEEEEEECSBCHHHHH
T ss_pred CCccccChHHHHHHHHHHhh--CCCCeEEEEEccHHHhCC--HHHHHHHHHhCCCeEEEEEeCCcchHHHH
Confidence 35889999999999999986 567899999999999987 678999999999976665 5557998765
No 28
>2pan_A Glyoxylate carboligase; thiamin-diphosphate (THDP), thimain-dependent enzymes, FAD, lyase; HET: FAD TDP 1PE; 2.70A {Escherichia coli}
Probab=98.71 E-value=3.4e-09 Score=102.54 Aligned_cols=64 Identities=20% Similarity=0.137 Sum_probs=54.2
Q ss_pred ccccCCCCchhhhHHHHHhhhcCCCCeEEEEEcCCccchhhHHHHHHHHHHcCCCEEEEEecC-Ccccccc
Q 026778 141 VSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNN-GWAISTP 210 (233)
Q Consensus 141 ~~g~lG~~~~~A~G~A~a~k~~~~~~vvv~~~GDG~~~~G~~~Ealn~A~~~~lPvvfvv~nN-~~ais~~ 210 (233)
.+|++|.++|.|+|+|+|.+ ++.|+|++|||++..+ +++|++|+.+++|+++||.|| +|+|...
T Consensus 440 ~~G~~G~~l~~AiGaala~~----~~~vv~i~GDGs~~~~--~~~L~ta~~~~l~~~ivv~NN~~~~~~~~ 504 (616)
T 2pan_A 440 QAGPLGWTIPAALGVCAADP----KRNVVAISGDFDFQFL--IEELAVGAQFNIPYIHVLVNNAYLGLIRQ 504 (616)
T ss_dssp TTCCTTCHHHHHHHHHHHCT----TCEEEEEEEHHHHHHT--GGGHHHHHHTTCCCEEEEEECSBCHHHHH
T ss_pred CcccccchHHHHHHHHHhCC----CCcEEEEEcchhhhCC--HHHHHHHHHhCCCeEEEEEECCcchHHHH
Confidence 46889999999999999963 6789999999999987 679999999999986666555 6998643
No 29
>1v5e_A Pyruvate oxidase; oxidoreductase, flavoprotein; HET: FAD; 1.60A {Aerococcus viridans} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 2dji_A* 1v5f_A* 1v5g_A*
Probab=98.71 E-value=4.8e-09 Score=101.17 Aligned_cols=65 Identities=22% Similarity=0.254 Sum_probs=55.6
Q ss_pred ccccCCCCchhhhHHHHHhhhcCCCCeEEEEEcCCccchhhHHHHHHHHHHcCCCEEEEEe-cCCccccccc
Q 026778 141 VSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICR-NNGWAISTPI 211 (233)
Q Consensus 141 ~~g~lG~~~~~A~G~A~a~k~~~~~~vvv~~~GDG~~~~G~~~Ealn~A~~~~lPvvfvv~-nN~~ais~~~ 211 (233)
..+.+|.++|.|+|+|+|.+ ++.|+|++|||++..+ +++|++|+.+++|+++||. ||+|++....
T Consensus 411 ~~g~mG~~l~~AiGaala~~----~~~vv~i~GDG~~~~~--~~~L~ta~~~~l~~~ivv~NN~~~~~~~~~ 476 (590)
T 1v5e_A 411 LFATMGIAIPGGLGAKNTYP----DRQVWNIIGDGAFSMT--YPDVVTNVRYNMPVINVVFSNTEYAFIKNK 476 (590)
T ss_dssp SSCCTTCHHHHHHHHHHHCT----TSCEEEEEEHHHHHHH--GGGHHHHHHTTCCCEEEEEECSSCTTGGGT
T ss_pred CCCcccChHHHHHHHHHhCC----CCeEEEEEechHHhch--HHHHHHHHHhCCCCEEEEEECCchHHHHHH
Confidence 46899999999999999863 6789999999999988 6999999999999777664 5579998754
No 30
>1ozh_A ALS, acetolactate synthase, catabolic; acetohydroxyacid synthase, thiamin diphosphate, lyase; HET: PGE HE3; 2.00A {Klebsiella pneumoniae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1ozg_A* 1ozf_A*
Probab=98.67 E-value=5.7e-09 Score=100.08 Aligned_cols=64 Identities=23% Similarity=0.323 Sum_probs=54.2
Q ss_pred ccccCCCCchhhhHHHHHhhhcCCCCeEEEEEcCCccchhhHHHHHHHHHHcCCCEEEEEecC-Ccccccc
Q 026778 141 VSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNN-GWAISTP 210 (233)
Q Consensus 141 ~~g~lG~~~~~A~G~A~a~k~~~~~~vvv~~~GDG~~~~G~~~Ealn~A~~~~lPvvfvv~nN-~~ais~~ 210 (233)
..+.+|.++|.|+|+|+|.+ ++.|+|++|||++..+ +++|++|..+++|+++||.|| +|++...
T Consensus 418 g~g~mG~~l~~AiGaala~~----~~~vv~i~GDG~~~~~--~~~L~ta~~~~l~~~ivv~nN~~~~~~~~ 482 (566)
T 1ozh_A 418 GQQTMGVALPWAIGAWLVNP----ERKVVSVSGDGGFLQS--SMELETAVRLKANVLHLIWVDNGYNMVAI 482 (566)
T ss_dssp TTCCTTCHHHHHHHHHHHST----TSEEEEEEEHHHHHHH--TTHHHHHHHHTCCEEEEEEECSBCHHHHH
T ss_pred CcccccchHHHHHHHHHhCC----CCCEEEEEcChHHhcc--HHHHHHHHHhCCCcEEEEEECCchhHHHH
Confidence 46889999999999999863 6789999999999886 577999999999987766555 6988764
No 31
>2iht_A Carboxyethylarginine synthase; thiamin diphosphate complex, transferase; HET: MSE TPP; 2.00A {Streptomyces clavuligerus} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1upb_A* 1upc_A* 1upa_A* 2ihu_A* 2ihv_A*
Probab=98.64 E-value=6.4e-09 Score=99.77 Aligned_cols=64 Identities=23% Similarity=0.307 Sum_probs=54.4
Q ss_pred ccccCCCCchhhhHHHHHhhhcCCCCeEEEEEcCCccchhhHHHHHHHHHHcCCCEEEEE-ecCCcccccc
Q 026778 141 VSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFIC-RNNGWAISTP 210 (233)
Q Consensus 141 ~~g~lG~~~~~A~G~A~a~k~~~~~~vvv~~~GDG~~~~G~~~Ealn~A~~~~lPvvfvv-~nN~~ais~~ 210 (233)
..+++|.++|.|+|+|+|.+ ++.|+|++|||++..+ +++|++|+.+++|+++|| +||+|+|...
T Consensus 434 g~g~mG~~l~~AiGaa~a~~----~~~vv~i~GDG~~~~~--~~~L~~a~~~~l~~~ivv~NN~~~~~~~~ 498 (573)
T 2iht_A 434 GCSSFGYGIPAAIGAQMARP----DQPTFLIAGDGGFHSN--SSDLETIARLNLPIVTVVVNNDTNGLIEL 498 (573)
T ss_dssp SSCCTTCHHHHHHHHHHHST----TSCEEEEEEHHHHHHT--GGGHHHHHHHTCCCEEEEEECSBCHHHHH
T ss_pred CCcccccHHHHHHHHHHhCC----CCcEEEEEccHHHHhH--HHHHHHHHHhCCCeEEEEEECCcchhhHH
Confidence 45889999999999999863 6789999999999987 689999999999976655 5556998775
No 32
>1ovm_A Indole-3-pyruvate decarboxylase; thiamine diphosphate, indole-3-acetic acid, TDP dependent enzyme, lyase; HET: TPP; 2.65A {Enterobacter cloacae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9
Probab=98.64 E-value=6.4e-09 Score=99.08 Aligned_cols=64 Identities=20% Similarity=0.260 Sum_probs=53.3
Q ss_pred ccccCCCCchhhhHHHHHhhhcCCCCeEEEEEcCCccchhhHHHHHHHHHHcCCCEEEEEec-CCcccccc
Q 026778 141 VSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRN-NGWAISTP 210 (233)
Q Consensus 141 ~~g~lG~~~~~A~G~A~a~k~~~~~~vvv~~~GDG~~~~G~~~Ealn~A~~~~lPvvfvv~n-N~~ais~~ 210 (233)
..+.+|.++|.|+|+|+|.+ ++.|+|++|||++..+ +++|++|..+++|+++||.| |+|+|...
T Consensus 406 ~~g~mG~~l~~A~G~a~a~~----~~~vv~~~GDG~~~~~--~~el~ta~~~~l~~~ivv~nN~~~~~~~~ 470 (552)
T 1ovm_A 406 LWGSIGYTLAAAFGAQTACP----NRRVIVLTGDGAAQLT--IQELGSMLRDKQHPIILVLNNEGYTVERA 470 (552)
T ss_dssp TTCCTTHHHHHHHHHHHHCT----TSCEEEEEEHHHHHHH--TTHHHHHHHTTCCCEEEEEESSSCHHHHH
T ss_pred hhHhhhhHHHHHHHHHHhCC----CCcEEEEECchHHHhH--HHHHHHHHHhCCCCEEEEEECCCCeEEEe
Confidence 46889999999999999854 6789999999999876 77899999999997666655 46998743
No 33
>1ybh_A Acetolactate synthase, chloroplast; acetohydroxyacid synthase, herbicide, sulfonylurea, thiamin diphosphate, FAD, inhibitor; HET: CIE NHE FAD P22; 2.50A {Arabidopsis thaliana} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1yhy_A* 1yhz_A* 1yi0_A* 1yi1_A* 1z8n_A* 3ea4_A* 3e9y_A*
Probab=98.64 E-value=9.3e-09 Score=98.99 Aligned_cols=63 Identities=27% Similarity=0.270 Sum_probs=53.7
Q ss_pred ccccCCCCchhhhHHHHHhhhcCCCCeEEEEEcCCccchhhHHHHHHHHHHcCCCEEEEE-ecCCccccc
Q 026778 141 VSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFIC-RNNGWAIST 209 (233)
Q Consensus 141 ~~g~lG~~~~~A~G~A~a~k~~~~~~vvv~~~GDG~~~~G~~~Ealn~A~~~~lPvvfvv-~nN~~ais~ 209 (233)
..|++|.++|.|+|+|+|.+ ++.|+|++|||++..+ +++|++|+.+++|+++|| +||+|++..
T Consensus 424 ~~G~~G~~l~~AiGaala~~----~~~vv~i~GDGs~~~~--~~~L~ta~~~~l~~~ivv~NN~~~~~~~ 487 (590)
T 1ybh_A 424 GLGAMGFGLPAAIGASVANP----DAIVVDIDGDGSFIMN--VQELATIRVENLPVKVLLLNNQHLGMVM 487 (590)
T ss_dssp SSCCTTCHHHHHHHHHHHCT----TSCEEEEEEHHHHHHT--TTHHHHHHHTTCCEEEEEEECSBCHHHH
T ss_pred CcccccchHHHHHHHHHhCC----CCcEEEEEccchhhcc--HHHHHHHHHhCCCcEEEEEECCcchHHH
Confidence 45899999999999999863 6789999999999987 679999999999976655 566798865
No 34
>2vbf_A Branched-chain alpha-ketoacid decarboxylase; KDCA, flavoprotein, THDP-dependent enzymes, thiamine pyrophosphate, lyase; HET: TPP; 1.60A {Lactococcus lactis} PDB: 2vbg_A*
Probab=98.63 E-value=1.1e-08 Score=98.03 Aligned_cols=65 Identities=22% Similarity=0.357 Sum_probs=54.3
Q ss_pred cccccCCCCchhhhHHHHHhhhcCCCCeEEEEEcCCccchhhHHHHHHHHHHcCCCEEEEE-ecCCcccccc
Q 026778 140 TVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFIC-RNNGWAISTP 210 (233)
Q Consensus 140 ~~~g~lG~~~~~A~G~A~a~k~~~~~~vvv~~~GDG~~~~G~~~Ealn~A~~~~lPvvfvv-~nN~~ais~~ 210 (233)
...+.+|.++|.|+|+|+|.+ ++.|+|++|||++..+ +++|++|..+++|+++|| +||+|+|...
T Consensus 422 ~~~g~mG~~l~~A~Gaala~~----~~~vv~~~GDG~~~~~--~~eL~ta~~~~l~~~ivv~nN~~~~~~~~ 487 (570)
T 2vbf_A 422 PLWGSIGYTFPAALGSQIADK----ESRHLLFIGDGSLQLT--VQELGLSIREKLNPICFIINNDGYTVERE 487 (570)
T ss_dssp TTTCCTTTHHHHHHHHHHHCT----TSEEEEEEEHHHHHHH--GGGHHHHHHTTCCCEEEEEESSSCHHHHH
T ss_pred ccchhhhhhHHHHHHHHHhCC----CCcEEEEEcchhhhcC--HHHHHHHHHcCCCCEEEEEECCchHHHHH
Confidence 356889999999999999963 6789999999999886 667999999999976655 5558988653
No 35
>2vbi_A Pyruvate decarboxylase; thiamine pyrophosphate, lyase, pyruv flavoprotein, THDP-dependent enzyme; HET: TPP; 2.75A {Acetobacter pasteurianus}
Probab=98.62 E-value=9.8e-09 Score=98.25 Aligned_cols=66 Identities=27% Similarity=0.338 Sum_probs=54.6
Q ss_pred ccccCCCCchhhhHHHHHhhhcCCCCeEEEEEcCCccchhhHHHHHHHHHHcCCCEEEEE-ecCCcccccccc
Q 026778 141 VSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFIC-RNNGWAISTPIS 212 (233)
Q Consensus 141 ~~g~lG~~~~~A~G~A~a~k~~~~~~vvv~~~GDG~~~~G~~~Ealn~A~~~~lPvvfvv-~nN~~ais~~~~ 212 (233)
..+.+|.++|.|+|+|+|. +++.|+|++|||++..+ +++|++|+.+++|+++|| +||+|+|.....
T Consensus 407 ~~g~mG~~l~~A~G~ala~----~~~~vv~~~GDG~~~~~--~~eL~ta~~~~l~~~ivv~nN~~~~~~~~~~ 473 (566)
T 2vbi_A 407 QWGHIGWSVPSAFGNAMGS----QDRQHVVMVGDGSFQLT--AQEVAQMVRYELPVIIFLINNRGYVIEIAIH 473 (566)
T ss_dssp TTCCTTTHHHHHHHHHHTC----TTSEEEEEEEHHHHHHH--GGGHHHHHHTTCCCEEEEEECSSCHHHHTTS
T ss_pred cccchhhHHHHHHHHHHhC----CCCcEEEEEcchHHHhh--HHHHHHHHHhCCCcEEEEEECCcceEEEeec
Confidence 4688999999999999985 36789999999999886 567999999999965555 566899987643
No 36
>2pgn_A Cyclohexane-1,2-dione hydrolase (CDH); three alpha/beta domains; HET: P6G FAD TPP; 1.20A {Azoarcus SP} PDB: 2pgo_A*
Probab=98.62 E-value=8.8e-09 Score=99.20 Aligned_cols=65 Identities=18% Similarity=0.253 Sum_probs=54.8
Q ss_pred ccccCCCCchhhhHHHHHhhhcCCCCeEEEEEcCCccchhhHHHHHHHHHHcCCCEEEEEecC-Cccccccc
Q 026778 141 VSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNN-GWAISTPI 211 (233)
Q Consensus 141 ~~g~lG~~~~~A~G~A~a~k~~~~~~vvv~~~GDG~~~~G~~~Ealn~A~~~~lPvvfvv~nN-~~ais~~~ 211 (233)
..+.+|.++|.|+|+|+|.+ ++.|+|++|||++..+ +++|++|..+++|+++||.|| +|++....
T Consensus 422 g~g~mG~~l~~AiGaala~~----~~~vv~i~GDG~~~~~--~~~L~ta~~~~l~~~ivv~nN~~~~~~~~~ 487 (589)
T 2pgn_A 422 AEGILGCGFPMALGAQLAEP----NSRVFLGTGDGALYYH--FNEFRVAVEHKLPVITMVFTNESYGANWTL 487 (589)
T ss_dssp TTCCTTCHHHHHHHHHHHCT----TSCEEEEEEHHHHHHH--GGGHHHHHHTTCCCEEEEEECSBCHHHHHH
T ss_pred CcchhhhHHHHHHHHHHhCC----CCcEEEEEeeHHHHhh--HHHHHHHHHhCCCeEEEEEECCCcccchHH
Confidence 35889999999999999863 6789999999999987 699999999999976666555 69987653
No 37
>2wvg_A PDC, pyruvate decarboxylase; thiamine diphosphate, lyase, flavoprotein, metal-binding, alcohol fermentation; HET: TPU; 1.75A {Zymomonas mobilis} PDB: 2wva_A* 2wvh_A 3oe1_A* 1zpd_A*
Probab=98.60 E-value=1.5e-08 Score=97.11 Aligned_cols=66 Identities=23% Similarity=0.277 Sum_probs=54.9
Q ss_pred ccccCCCCchhhhHHHHHhhhcCCCCeEEEEEcCCccchhhHHHHHHHHHHcCCCEEEE-EecCCcccccccc
Q 026778 141 VSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFI-CRNNGWAISTPIS 212 (233)
Q Consensus 141 ~~g~lG~~~~~A~G~A~a~k~~~~~~vvv~~~GDG~~~~G~~~Ealn~A~~~~lPvvfv-v~nN~~ais~~~~ 212 (233)
..+.+|.++|.|+|+|+|.+ ++.|+|++|||++..+ +++|++|..+++|+++| ++||+|+|.....
T Consensus 411 ~~g~~G~~l~~A~G~ala~~----~~~vv~i~GDGs~~~~--~~el~ta~~~~l~~~ivv~NN~~~~~~~~~~ 477 (568)
T 2wvg_A 411 QWGHIGWSVPAAFGYAVGAP----ERRNILMVGDGSFQLT--AQEVAQMVRLKLPVIIFLINNYGYTIEVMIH 477 (568)
T ss_dssp TTCCTTTHHHHHHHHHHHCT----TSEEEEEEEHHHHHHH--GGGHHHHHHTTCCCEEEEEECSSCHHHHTTS
T ss_pred CcchhhhHHHHHHHHHHhCC----CCcEEEEEcChhHhcc--HHHHHHHHHcCCCcEEEEEECCcceEeeeec
Confidence 46789999999999999963 6789999999999885 66699999999997555 5666899987643
No 38
>1t9b_A Acetolactate synthase, mitochondrial; acetohydroxyacid synthase, herbicide, sulfonylurea, thiamin diphosphate, FAD, inhibitor; HET: 1CS P25 FAD NSP P22 YF3; 2.20A {Saccharomyces cerevisiae} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 1n0h_A* 1t9a_A* 1t9c_A* 1t9d_A* 1jsc_A*
Probab=98.55 E-value=2.1e-08 Score=98.63 Aligned_cols=64 Identities=22% Similarity=0.250 Sum_probs=52.5
Q ss_pred ccccCCCCchhhhHHHHHhhhcCCCCeEEEEEcCCccchhhHHHHHHHHHHcCCCEEEEE-ecCCcccccc
Q 026778 141 VSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFIC-RNNGWAISTP 210 (233)
Q Consensus 141 ~~g~lG~~~~~A~G~A~a~k~~~~~~vvv~~~GDG~~~~G~~~Ealn~A~~~~lPvvfvv-~nN~~ais~~ 210 (233)
..|++|.++|.|+|+|+|. .++.|+|++|||++..+ +++|++|+.+++|+++|| +||+|+|...
T Consensus 511 ~~G~mG~~lpaAiGaalA~----p~~~Vv~i~GDGsf~~~--~~eL~ta~~~~l~v~ivV~NN~~~g~~~~ 575 (677)
T 1t9b_A 511 GLGTMGYGLPAAIGAQVAK----PESLVIDIDGDASFNMT--LTELSSAVQAGTPVKILILNNEEQGMVTQ 575 (677)
T ss_dssp SSCCTTCHHHHHHHHHHHC----TTSEEEEEEEHHHHHHH--GGGHHHHHHHTCCCEEEEEECSSCHHHHH
T ss_pred CcchhhchHHHHHHHHHhC----CCCeEEEEEeehHHhcc--HHHHHHHHHhCCCeEEEEEeCCCchhhhh
Confidence 3578899999999999985 46889999999999885 566999999999976555 5557988653
No 39
>2nxw_A Phenyl-3-pyruvate decarboxylase; thiamine pyrophosphate, asymmetric dimer of dimers, open ACT loops, lyase; HET: TPP; 1.50A {Azospirillum brasilense} PDB: 2q5j_A* 2q5l_A* 2q5o_A* 2q5q_A*
Probab=98.52 E-value=2e-08 Score=96.29 Aligned_cols=63 Identities=19% Similarity=0.215 Sum_probs=51.9
Q ss_pred cccCCCCchhhhHHHHHhhhcCCCCeEEEEEcCCccchhhHHHHHHHHHHcCCCEEEEE-ecCCcccccc
Q 026778 142 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFIC-RNNGWAISTP 210 (233)
Q Consensus 142 ~g~lG~~~~~A~G~A~a~k~~~~~~vvv~~~GDG~~~~G~~~Ealn~A~~~~lPvvfvv-~nN~~ais~~ 210 (233)
.+.+|.++|.|+|+|+|.+ ++.|+|++|||++. .-+++|++|..+++|+++|| +||+|++...
T Consensus 421 ~g~mG~~l~~A~G~ala~~----~~~vv~i~GDG~~~--~~~~~l~ta~~~~l~~~ivv~nN~~~~~~~~ 484 (565)
T 2nxw_A 421 YAGMGFGVPAGIGAQCVSG----GKRILTVVGDGAFQ--MTGWELGNCRRLGIDPIVILFNNASWEMLRT 484 (565)
T ss_dssp TCCTTCHHHHHHHHHHHTT----TCCEEEEEEHHHHH--HHGGGGGGHHHHTCCCEEEEEECSBCHHHHH
T ss_pred cccccccchHHHHHHHhCC----CCcEEEEEechHHH--hhHHHHHHHHHhCCCCEEEEEECCCCcEEee
Confidence 5789999999999999863 57899999999998 44788999999999976655 5557988643
No 40
>3eya_A Pyruvate dehydrogenase [cytochrome]; pyruvate oxidase, membrane-associated flavoprotein dehydrogenase, interactions with lipids cell membrane; HET: TDP FAD; 2.50A {Escherichia coli} PDB: 3ey9_A*
Probab=98.45 E-value=6.8e-08 Score=92.19 Aligned_cols=63 Identities=22% Similarity=0.279 Sum_probs=50.7
Q ss_pred ccccCCCCchhhhHHHHHhhhcCCCCeEEEEEcCCccchhhHHHHHHHHHHcCCCEEEEE-ecCCccccc
Q 026778 141 VSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFIC-RNNGWAIST 209 (233)
Q Consensus 141 ~~g~lG~~~~~A~G~A~a~k~~~~~~vvv~~~GDG~~~~G~~~Ealn~A~~~~lPvvfvv-~nN~~ais~ 209 (233)
..|.+|.++|.|+|+++|.+ ++.|+|++|||++..+ +++|++|..+++|+++|| +||+|++..
T Consensus 404 ~~g~mG~~l~~AiGaala~~----~~~vv~i~GDGs~~~~--~~~L~ta~~~~l~~~ivv~nN~~~g~~~ 467 (549)
T 3eya_A 404 NHGSMANAMPQALGAQATEP----ERQVVAMCGDGGFSML--MGDFLSVVQMKLPVKIVVFNNSVLGFVA 467 (549)
T ss_dssp TTCCTTCHHHHHHHHHHHST----TSCEEEEEEHHHHHHT--GGGHHHHHHTTCCCEEEEEECSBCCCC-
T ss_pred CCchhhhHHHHHHHHHHhCC----CCcEEEEEccchhhcc--HHHHHHHHHhCCCeEEEEEeCCccHHHH
Confidence 45778899999999988863 6789999999999876 688999999999975555 555788753
No 41
>2x7j_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene -1-carboxylate synthase; transferase, metal-binding; HET: TPP; 2.35A {Bacillus subtilis}
Probab=98.44 E-value=6.4e-08 Score=93.47 Aligned_cols=62 Identities=19% Similarity=0.146 Sum_probs=51.1
Q ss_pred cccCCCCchhhhHHHHHhhhcCCCCeEEEEEcCCccchhhHHHHHHHHHHcCCCEEEEE-ecCCcccccc
Q 026778 142 SSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFIC-RNNGWAISTP 210 (233)
Q Consensus 142 ~g~lG~~~~~A~G~A~a~k~~~~~~vvv~~~GDG~~~~G~~~Ealn~A~~~~lPvvfvv-~nN~~ais~~ 210 (233)
.+.+|.++|.|+|+|+|. ++.|+|++|||++..+ +++|++|+.+++|+++|| +||+|+|...
T Consensus 454 ~~~ig~~l~~AiGaala~-----~~~vv~i~GDGsf~~~--~~eL~ta~~~~lp~~ivv~NN~~~~i~~~ 516 (604)
T 2x7j_A 454 ANGIDGVVSSAMGVCEGT-----KAPVTLVIGDLSFYHD--LNGLLAAKKLGIPLTVILVNNDGGGIFSF 516 (604)
T ss_dssp TCCSSSHHHHHHHHHHHH-----TSCEEEEEEHHHHHHT--GGGGHHHHHHCCCEEEEEEECSSCGGGGG
T ss_pred cCCcCcHHHHHHHHHhcC-----CCcEEEEEccHHHHhH--HHHHHHhhhcCCCeEEEEEeCCCCccccc
Confidence 356789999999999983 5789999999999987 456999999999976665 5668998543
No 42
>2c31_A Oxalyl-COA decarboxylase; oxalate, thiamin diphosphate, flavoprotein, lyase, thiamine pyrophosphate; HET: TZD ADP; 1.73A {Oxalobacter formigenes} SCOP: c.31.1.3 c.36.1.5 c.36.1.9 PDB: 2ji6_A* 2ji7_A* 2ji8_A* 2ji9_A* 2jib_A*
Probab=98.42 E-value=7.1e-08 Score=92.34 Aligned_cols=58 Identities=21% Similarity=0.157 Sum_probs=50.1
Q ss_pred cccccCCCCchhhhHHHHHhhhcCCCCeEEEEEcCCccchhhHHHHHHHHHHcCCCEEEEEecCC
Q 026778 140 TVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNG 204 (233)
Q Consensus 140 ~~~g~lG~~~~~A~G~A~a~k~~~~~~vvv~~~GDG~~~~G~~~Ealn~A~~~~lPvvfvv~nN~ 204 (233)
+..|++|.++|.|+|+|+| .++.|+|++|||++... ++.|++|..+++|+++||.||+
T Consensus 423 g~~g~~G~~l~~AiGaala-----~~~~vv~i~GDGsf~~~--~~el~ta~~~~l~~~ivv~NN~ 480 (568)
T 2c31_A 423 GTWGVMGIGMGYCVAAAAV-----TGKPVIAVEGDSAFGFS--GMELETICRYNLPVTVIIMNNG 480 (568)
T ss_dssp TTTTCSSCHHHHHHHHHHH-----HCSCEEEEEEHHHHHTT--GGGHHHHHHTTCCEEEEEEESS
T ss_pred CCCccccccHHHHHHHHhC-----CCCcEEEEEcchHhhcc--HHHHHHHHHhCCCeEEEEEeCc
Confidence 3567899999999999998 45789999999999875 6779999999999988887776
No 43
>2q28_A Oxalyl-COA decarboxylase; lyase, oxalate degradation, thiami diphosphate, lyase; HET: TPP ADP MES; 1.74A {Escherichia coli} PDB: 2q27_A* 2q29_A*
Probab=98.37 E-value=1.1e-07 Score=90.83 Aligned_cols=61 Identities=18% Similarity=0.152 Sum_probs=51.0
Q ss_pred cccccCCCCchhhhHHHHHhhhcCCCCeEEEEEcCCccchhhHHHHHHHHHHcCCCEEEEEecCC-c-cc
Q 026778 140 TVSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNG-W-AI 207 (233)
Q Consensus 140 ~~~g~lG~~~~~A~G~A~a~k~~~~~~vvv~~~GDG~~~~G~~~Ealn~A~~~~lPvvfvv~nN~-~-ai 207 (233)
+..|++|.++|.|+|+|+| .++.|+|++|||++... ++.|++|..+++|+++||.||+ | ++
T Consensus 418 g~~g~~G~~l~~AiGaa~a-----~~~~vv~i~GDGsf~~~--~~el~ta~~~~l~~~ivv~NN~~~~~~ 480 (564)
T 2q28_A 418 GTWGVMGIGMGYAIGASVT-----SGSPVVAIEGDSAFGFS--GMEIETICRYNLPVTIVIFNNGGIYRG 480 (564)
T ss_dssp TTTTCTTCHHHHHHHHHHH-----HCSCEEEEEEHHHHHTT--GGGHHHHHHTTCCEEEEEEECSBSSCS
T ss_pred CCCCcccchHHHHHHHhhc-----CCCcEEEEEcchHhhcc--HHHHHHHHHhCCCeEEEEEeCchhHHH
Confidence 3568899999999999998 46789999999999875 4779999999999888777775 4 55
No 44
>3hww_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- carboxylate synthase; menaquinone, THDP, Mg, vitamin K2, carboxylase, magnesium; HET: AKG; 1.95A {Escherichia coli k-12} PDB: 3flm_A* 3hwx_A* 2jlc_A* 2jla_A*
Probab=98.24 E-value=2.6e-07 Score=88.31 Aligned_cols=61 Identities=25% Similarity=0.213 Sum_probs=45.3
Q ss_pred ccccCCCCchhhhHHHHHhhhcCCCCeEEEEEcCCccchhhHHHHHHHHHHcCCCEEEEEecCC-ccccc
Q 026778 141 VSSTIATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNG-WAIST 209 (233)
Q Consensus 141 ~~g~lG~~~~~A~G~A~a~k~~~~~~vvv~~~GDG~~~~G~~~Ealn~A~~~~lPvvfvv~nN~-~ais~ 209 (233)
..|+.|. +|.|+|+++|. ++.|+|++|||++... .+.|++|..+++|+++||.||+ |+|..
T Consensus 415 ~~g~~G~-l~~A~Gaa~a~-----~~~vv~i~GDGsf~~~--~~eL~ta~~~~lpv~ivv~NN~~~~~~~ 476 (556)
T 3hww_A 415 ASGIDGL-LSTAAGVQRAS-----GKPTLAIVGDLSALYD--LNALALLRQVSAPLVLIVVNNNGGQIFS 476 (556)
T ss_dssp SCCSSSH-HHHHHHHHHHH-----CCCEEEEEEHHHHHHT--GGGHHHHTTCSSCEEEEEEESCC-----
T ss_pred ccccccH-HHHHHHHHhcC-----CCcEEEEEccHHhhhc--chhhHhhcccCCCcEEEEEECCCCCccc
Confidence 3455565 99999999982 5789999999998765 4559999999999988887775 67653
No 45
>3lq1_A 2-succinyl-5-enolpyruvyl-6-hydroxy-3-cyclohexene- 1-carboxylate synthase; menaquinone biosynthesis, sephchc synthase, structural genomics; 2.60A {Listeria monocytogenes}
Probab=98.08 E-value=7.8e-07 Score=85.43 Aligned_cols=57 Identities=19% Similarity=0.149 Sum_probs=40.7
Q ss_pred CCCCchhhhHHHHHhhhcCCCCeEEEEEcCCccchhhHHHHHHHHHHcCCCEEEEEecC-Cccccc
Q 026778 145 IATQLPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNN-GWAIST 209 (233)
Q Consensus 145 lG~~~~~A~G~A~a~k~~~~~~vvv~~~GDG~~~~G~~~Ealn~A~~~~lPvvfvv~nN-~~ais~ 209 (233)
+|.++|.|+|+|++ ++.|+|++|||++... .++|++|..+++|+++||.|| +|++..
T Consensus 438 ~~g~l~~AiGaa~~------~~~vv~i~GDGsf~~~--~~eL~ta~~~~l~~~ivv~NN~~~g~~~ 495 (578)
T 3lq1_A 438 IDGVVSSALGASVV------FQPMFLLIGDLSFYHD--MNGLLMAKKYKMNLTIVIVNNDGGGIFS 495 (578)
T ss_dssp SSSHHHHHHHHTTT------SSSEEEEEEHHHHHHT--GGGGHHHHHTTCCEEEEEECCC------
T ss_pred cccHHHHHHHHhcC------CCCEEEEEchHHHHhh--HHHHHhhccCCCCeEEEEEECCcCcccc
Confidence 34468888888642 6789999999999865 567999999999987777666 688765
No 46
>2c42_A Pyruvate-ferredoxin oxidoreductase; 4Fe-4S, iron, iron-sulfur, iron-sulfur cluster, pyruvate catabolism, TPP-dependent enzyme; HET: TPP; 1.78A {Desulfovibrio africanus} SCOP: c.36.1.8 c.36.1.12 c.48.1.3 c.64.1.1 d.58.1.5 PDB: 1b0p_A* 1kek_A* 2c3o_A* 2c3p_A* 2c3u_A* 2c3y_A* 2c3m_A* 2pda_A* 2uza_A*
Probab=94.01 E-value=0.025 Score=59.19 Aligned_cols=42 Identities=14% Similarity=0.212 Sum_probs=33.6
Q ss_pred CCeEEEEEcCC-ccchhhHHHHHHHHHHcCCCEEEEEecCC-cccc
Q 026778 165 DACAVTYFGDG-GTSEGDFHAALNFSAVTEAPVIFICRNNG-WAIS 208 (233)
Q Consensus 165 ~~vvv~~~GDG-~~~~G~~~Ealn~A~~~~lPvvfvv~nN~-~ais 208 (233)
++.|||+.||| +...| ...|..|..+++|+++||-||+ |+.-
T Consensus 953 ~~~Vv~i~GDG~~~~mg--~~eL~ta~~~~~~v~iiVlnN~~yg~t 996 (1231)
T 2c42_A 953 KKSVWIFGGDGWAYDIG--YGGLDHVLASGEDVNVFVMDTEVYSNT 996 (1231)
T ss_dssp CCEEEEEEEHHHHHTTT--HHHHHHHHHTTCSCEEEEEECSSBTTT
T ss_pred CCcEEEEeCcHHHHHcc--hHHHHHHHHhCCCeEEEEEECHHHHhH
Confidence 37899999999 77888 4468999999999888777775 5544
No 47
>3mos_A Transketolase, TK; thiamin diphosphate TPP THDP enzyme catalysis sugar metaboli transferase; HET: TPP; 1.75A {Homo sapiens} PDB: 3ooy_A*
Probab=78.14 E-value=4.3 Score=39.20 Aligned_cols=75 Identities=15% Similarity=0.125 Sum_probs=48.1
Q ss_pred hhHHHHHhhhcCCCCeEEEEEcCCccchhhHHHHHHHHHHcCCCEEEEEecCCcccc--ccccccccCCCchhhhccccc
Q 026778 152 AVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAIS--TPISDQFRSIPSLPCLSNILT 229 (233)
Q Consensus 152 A~G~A~a~k~~~~~~vvv~~~GDG~~~~G~~~Ealn~A~~~~lPvvfvv~nN~~ais--~~~~~q~~~~~~~~~~~~~~~ 229 (233)
++|+|.+..+.|...+.++.++++.. ..++.+..++..++|+++++..-+++.. .|++ .+.++ .+-+..+|+
T Consensus 367 ~v~~a~G~A~~G~~~~~~~~f~~Fl~---~a~dqi~~~a~~~~~v~~v~~~~g~~~G~dG~tH--~~~ed-~a~l~~iP~ 440 (616)
T 3mos_A 367 MVSIAVGCATRNRTVPFCSTFAAFFT---RAFDQIRMAAISESNINLCGSHCGVSIGEDGPSQ--MALED-LAMFRSVPT 440 (616)
T ss_dssp HHHHHHHHHGGGCCEEEEEEEGGGGG---GGHHHHHHHHHTTCCEEEEEESBSGGGCTTCGGG--CBSSH-HHHHHTSTT
T ss_pred HHHHHHHHHHcCCCCEEEEehHHHHH---HHHHHHHHHHHhCCCeEEEEECCCccccCCCCcc--cCHHH-HHHhcCCCC
Confidence 34444444444544567788999863 5588888899999999999887776444 3432 23333 345667777
Q ss_pred ccc
Q 026778 230 ILL 232 (233)
Q Consensus 230 ~~~ 232 (233)
+.|
T Consensus 441 l~V 443 (616)
T 3mos_A 441 STV 443 (616)
T ss_dssp EEE
T ss_pred CEE
Confidence 643
No 48
>1itz_A Transketolase; calvin cycle, cofactor, thiamine pyrophosphate, plant, transferase; HET: TPP; 2.30A {Zea mays} SCOP: c.36.1.6 c.36.1.10 c.48.1.1
Probab=70.21 E-value=8.5 Score=37.49 Aligned_cols=74 Identities=16% Similarity=0.148 Sum_probs=45.6
Q ss_pred hHHHHHhhhcCC-CCeEEEEEcCCccchhhHHHHHHHHHHcCCCEEEEEecCCccc--cccccccccCCCchhhhccccc
Q 026778 153 VGAAYALKMDRK-DACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAI--STPISDQFRSIPSLPCLSNILT 229 (233)
Q Consensus 153 ~G~A~a~k~~~~-~~vvv~~~GDG~~~~G~~~Ealn~A~~~~lPvvfvv~nN~~ai--s~~~~~q~~~~~~~~~~~~~~~ 229 (233)
+|+|.+..+.|. -+.++.++...++ -.++++..++..++||+|++...+++. ..|++ | +.+++ +-+..+|+
T Consensus 427 v~~a~GlA~~G~~~~P~~~t~~~F~~---~~~~~ir~~a~~~lpvv~~~t~~g~g~G~dG~tH-q-~~edl-a~lr~iP~ 500 (675)
T 1itz_A 427 GAICNGIALHSPGFVPYCATFFVFTD---YMRGAMRISALSEAGVIYVMTHDSIGLGEDGPTH-Q-PIEHL-VSFRAMPN 500 (675)
T ss_dssp HHHHHHHHTTCTTCEEEEEEEGGGHH---HHHHHHHHHHHHTCCCEEEEECCSGGGCTTCTTT-C-CSSHH-HHHHSSSS
T ss_pred HHHHHHHHhcCCCCEEEEEEHHHHHH---HHHHHHHHHHhcCCCEEEEEECCccccCCCCCCc-C-cHHHH-HHhccCCC
Confidence 334444444451 2445555655432 567889999999999999997766653 44554 3 33433 45677888
Q ss_pred ccc
Q 026778 230 ILL 232 (233)
Q Consensus 230 ~~~ 232 (233)
+.|
T Consensus 501 l~V 503 (675)
T 1itz_A 501 ILM 503 (675)
T ss_dssp CEE
T ss_pred eEE
Confidence 764
No 49
>2e6k_A Transketolase; structural genomics, NPPSFA, national project protein structural and functional analyses; 2.09A {Thermus thermophilus}
Probab=69.95 E-value=6.2 Score=38.24 Aligned_cols=73 Identities=14% Similarity=0.130 Sum_probs=45.0
Q ss_pred hhhhHHHHHhhhcCCCCeEEEEEcCCccchhhHHHHHHHHHHcCCCEEEEEecCCcccc--ccccccccCCCchhhhccc
Q 026778 150 PHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAIS--TPISDQFRSIPSLPCLSNI 227 (233)
Q Consensus 150 ~~A~G~A~a~k~~~~~~vvv~~~GDG~~~~G~~~Ealn~A~~~~lPvvfvv~nN~~ais--~~~~~q~~~~~~~~~~~~~ 227 (233)
+.|.|+|+. |.-+.++..+.-.+. -.++++..++..++||+|++.+.+++.. .|++ | +.+++ +-+..+
T Consensus 411 ~~a~GlA~~----Gg~~P~~~t~~~F~~---~~~~air~~a~~~lpvv~~~t~~g~g~G~dG~tH-q-~~edl-a~lr~i 480 (651)
T 2e6k_A 411 AILNGLNLH----GGYRAYGGTFLVFSD---YMRPAIRLAALMGVPTVFVFTHDSIALGEDGPTH-Q-PVEHL-MSLRAM 480 (651)
T ss_dssp HHHHHHHHH----SSCEEEEEEEGGGGG---GSHHHHHHHHHHTCCCEEEEECCSGGGCTTCTTT-C-CSSHH-HHHHTS
T ss_pred HHHHHHHHc----CCCEEEEEeHHHHHH---HHHHHHHHHHhcCCCEEEEEECCccccCCCcCcc-c-cHHHH-HHhcCC
Confidence 355666554 312344554433321 4477789999999999999988887653 4555 3 34443 346678
Q ss_pred ccccc
Q 026778 228 LTILL 232 (233)
Q Consensus 228 ~~~~~ 232 (233)
|++.|
T Consensus 481 P~l~V 485 (651)
T 2e6k_A 481 PNLFV 485 (651)
T ss_dssp TTCEE
T ss_pred CCcEE
Confidence 87654
No 50
>2r8o_A Transketolase 1, TK 1; reaction intermediate, calcium, metal-binding, thiamine pyrophosphate, transferase; HET: T5X; 1.47A {Escherichia coli K12} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 PDB: 2r5n_A* 2r8p_A* 1qgd_A*
Probab=65.74 E-value=11 Score=36.51 Aligned_cols=73 Identities=11% Similarity=0.005 Sum_probs=44.7
Q ss_pred hhhhHHHHHhhhcCCCCeEEEEEcCCccchhhHHHHHHHHHHcCCCEEEEEecCCcccc--ccccccccCCCchhhhccc
Q 026778 150 PHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAIS--TPISDQFRSIPSLPCLSNI 227 (233)
Q Consensus 150 ~~A~G~A~a~k~~~~~~vvv~~~GDG~~~~G~~~Ealn~A~~~~lPvvfvv~nN~~ais--~~~~~q~~~~~~~~~~~~~ 227 (233)
..|.|+|+. +.-..+++.+..-+. -.++++..++..++||+|++...+++.. .|++ | +.+++ +-+..+
T Consensus 416 ~~a~GlA~~----gG~~P~~~tf~~F~~---~~~~~ir~~a~~~lpvv~~~t~~g~~~G~dG~tH-q-~~edl-a~lr~i 485 (669)
T 2r8o_A 416 AIANGISLH----GGFLPYTSTFLMFVE---YARNAVRMAALMKQRQVMVYTHDSIGLGEDGPTH-Q-PVEQV-ASLRVT 485 (669)
T ss_dssp HHHHHHHHH----SSCEEEEEEEGGGGG---TTHHHHHHHHHTTCCCEEEEECCSGGGCTTCTTT-C-CSSHH-HHHHTS
T ss_pred HHHHHHHHc----CCCeEEEeehHHHHH---HHHHHHHHHHhcCCCEEEEEeCCCcCcCCCCCcc-C-CHHHH-HHhcCC
Confidence 345555554 212344455655432 3467788899999999999988777643 4554 3 33333 446678
Q ss_pred ccccc
Q 026778 228 LTILL 232 (233)
Q Consensus 228 ~~~~~ 232 (233)
|++.|
T Consensus 486 P~l~V 490 (669)
T 2r8o_A 486 PNMST 490 (669)
T ss_dssp TTCEE
T ss_pred CCCEE
Confidence 87754
No 51
>2o1s_A 1-deoxy-D-xylulose-5-phosphate synthase; DXS, thiamine, isoprenoid, transferase; HET: TDP; 2.40A {Escherichia coli}
Probab=63.80 E-value=12 Score=35.81 Aligned_cols=73 Identities=18% Similarity=0.211 Sum_probs=43.7
Q ss_pred hhhhHHHHHhhhcCCCCeEEEEEcCCccchhhHHHHHHHHHHcCCCEEEEEecCCcc-ccccccccccCCCchhhhcccc
Q 026778 150 PHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWA-ISTPISDQFRSIPSLPCLSNIL 228 (233)
Q Consensus 150 ~~A~G~A~a~k~~~~~~vvv~~~GDG~~~~G~~~Ealn~A~~~~lPvvfvv~nN~~a-is~~~~~q~~~~~~~~~~~~~~ 228 (233)
..|.|+|++ | -+.++.++++.. +=.+...++.++..++|++|++.+-++. -..|++.+. ++ ..-+..+|
T Consensus 375 ~~a~G~A~~----G-~rp~~~~~~~F~--~~a~dqi~~~~a~~~~pvv~~~~~~g~~g~~G~tH~~~--~d-~~~~~~iP 444 (621)
T 2o1s_A 375 TFAAGLAIG----G-YKPIVAIYSTFL--QRAYDQVLHDVAIQKLPVLFAIDRAGIVGADGQTHQGA--FD-LSYLRCIP 444 (621)
T ss_dssp HHHHHHHHT----T-CEEEEEEETTGG--GGGHHHHHHTTTTTTCCCEEEEESCBCCCTTCGGGCBC--SH-HHHTTTST
T ss_pred HHHHHHHHC----C-CEEEEEehHhHH--HHHHHHHHHHHHhcCCCEEEEEECCccCCCCCCccCch--HH-HHHHhcCC
Confidence 345555553 4 345667788875 3334455788899999999999877752 123443332 22 24456666
Q ss_pred cccc
Q 026778 229 TILL 232 (233)
Q Consensus 229 ~~~~ 232 (233)
++.|
T Consensus 445 ~l~v 448 (621)
T 2o1s_A 445 EMVI 448 (621)
T ss_dssp TCEE
T ss_pred CCEE
Confidence 6543
No 52
>1gpu_A Transketolase; transferase(ketone residues); HET: THD; 1.86A {Saccharomyces cerevisiae} SCOP: c.36.1.6 c.36.1.10 c.48.1.1 PDB: 1ngs_A* 1trk_A* 1ay0_A* 1tkb_A* 1tka_A* 1tkc_A*
Probab=60.38 E-value=12 Score=36.49 Aligned_cols=48 Identities=21% Similarity=0.364 Sum_probs=33.7
Q ss_pred HHHHHHHHHHcCCCEEEEEecCCccc--cccccccccCCCchhhhcccccccc
Q 026778 182 FHAALNFSAVTEAPVIFICRNNGWAI--STPISDQFRSIPSLPCLSNILTILL 232 (233)
Q Consensus 182 ~~Ealn~A~~~~lPvvfvv~nN~~ai--s~~~~~q~~~~~~~~~~~~~~~~~~ 232 (233)
.++++..++..++||+|++...+++. ..|++ | +.++ .+-+..+|++.|
T Consensus 449 ~~~air~~a~~~lpvv~v~t~~g~g~G~dG~tH-q-~~ed-la~lr~iP~l~V 498 (680)
T 1gpu_A 449 AAGAVRLSALSGHPVIWVATHDSIGVGEDGPTH-Q-PIET-LAHFRSLPNIQV 498 (680)
T ss_dssp GHHHHHHHHHHTCCCEEEEECCSGGGCTTCTTT-C-CSSH-HHHHHTSSSCEE
T ss_pred HHHHHHHHHhcCCCEEEEEeCCccccCCCCCcc-C-CHHH-HHHhcCCCCCEE
Confidence 46778889999999999997777654 35555 3 2333 355777887764
No 53
>1r9j_A Transketolase; domains, EACH of the alpha/beta type, thiamine diphosphate binding domain, transferase; HET: TPP; 2.22A {Leishmania mexicana mexicana} SCOP: c.36.1.6 c.36.1.10 c.48.1.1
Probab=57.61 E-value=18 Score=35.16 Aligned_cols=72 Identities=13% Similarity=0.049 Sum_probs=43.2
Q ss_pred hhhHHHHHhhhcCCCCeEEEEEcCCccchhhHHHHHHHHHHcCCCEEEEEecCCccc--cccccccccCCCchhhhcccc
Q 026778 151 HAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAI--STPISDQFRSIPSLPCLSNIL 228 (233)
Q Consensus 151 ~A~G~A~a~k~~~~~~vvv~~~GDG~~~~G~~~Ealn~A~~~~lPvvfvv~nN~~ai--s~~~~~q~~~~~~~~~~~~~~ 228 (233)
.|.|+|+. |.-..++.++..-+. -..+++..++..++||+|++...+++. ..|++ | +.+++ +-+..+|
T Consensus 417 ~a~GlA~~----GG~~P~~~~~~~F~~---~~~~~ir~~a~~~~pvv~~~t~~g~g~G~dG~tH-q-~~edl-a~lr~iP 486 (673)
T 1r9j_A 417 ILNGLDAH----DGIIPFGGTFLNFIG---YALGAVRLAAISHHRVIYVATHDSIGVGEDGPTH-Q-PVELV-AALRAMP 486 (673)
T ss_dssp HHHHHHHH----SSCEEEEEEEGGGGG---GGHHHHHHHHHHTCCCEEEEECCSGGGCTTCTTT-C-CSSHH-HHHHHST
T ss_pred HHHHHHhc----CCCEEEEEehHHHHH---HHHHHHHHHHhcCCCEEEEEECCccCcCCCCccc-C-CHHHH-HHHcCCC
Confidence 45555544 312344444533332 346778889999999999997777654 34554 3 23333 5677788
Q ss_pred cccc
Q 026778 229 TILL 232 (233)
Q Consensus 229 ~~~~ 232 (233)
++.|
T Consensus 487 ~l~V 490 (673)
T 1r9j_A 487 NLQV 490 (673)
T ss_dssp TCEE
T ss_pred CCEE
Confidence 8764
No 54
>2ozl_B PDHE1-B, pyruvate dehydrogenase E1 component subunit beta; pyruvate_dehydrogenase_complex, human, multienzyme_complex_component; HET: TPP; 1.90A {Homo sapiens} SCOP: c.36.1.7 c.48.1.2 PDB: 1ni4_B* 3exe_B* 3exf_B* 3exg_B 3exh_B* 3exi_B
Probab=55.46 E-value=7.1 Score=34.69 Aligned_cols=71 Identities=18% Similarity=0.015 Sum_probs=40.1
Q ss_pred chhhhHHHHHhhhcCCCCeEEE-EEcCCccchhhHHHHHHHHHH---------cCCCEEEEEecCCccc-cccccccccC
Q 026778 149 LPHAVGAAYALKMDRKDACAVT-YFGDGGTSEGDFHAALNFSAV---------TEAPVIFICRNNGWAI-STPISDQFRS 217 (233)
Q Consensus 149 ~~~A~G~A~a~k~~~~~~vvv~-~~GDG~~~~G~~~Ealn~A~~---------~~lPvvfvv~nN~~ai-s~~~~~q~~~ 217 (233)
+..|.|+|++ | -+.+++ .++|.. ...++.+..++. .++|++|++.. ++.- ..|++.|
T Consensus 75 v~~a~G~A~~----G-~rp~~~~~f~~F~---~~a~dqi~~~~a~~~y~~~g~~~~pvv~~~~~-G~~g~~G~tHs~--- 142 (341)
T 2ozl_B 75 AGIAVGAAMA----G-LRPICEFMTFNFS---MQAIDQVINSAAKTYYMSGGLQPVPIVFRGPN-GASAGVAAQHSQ--- 142 (341)
T ss_dssp HHHHHHHHHT----T-CEEEEECSSGGGG---GGGHHHHHTTTTTHHHHTTSSCCCCCEEEEEC-SCCSSCCGGGCC---
T ss_pred HHHHHHHHHC----C-CEEEEEeccHHHH---HHHHHHHHHHHHHHHhhccccCCCCEEEEEcC-cCCCCCCcchhh---
Confidence 3445566554 3 234444 488887 334566654432 79999999985 5322 3344422
Q ss_pred CCchhhhcccccccc
Q 026778 218 IPSLPCLSNILTILL 232 (233)
Q Consensus 218 ~~~~~~~~~~~~~~~ 232 (233)
.+.+-+..+|++.|
T Consensus 143 -~~ea~l~~iP~l~V 156 (341)
T 2ozl_B 143 -CFAAWYGHCPGLKV 156 (341)
T ss_dssp -CCHHHHHTSTTCEE
T ss_pred -HHHHHhccCCCCEE
Confidence 22255677777654
No 55
>3ibs_A Conserved hypothetical protein BATB; structural genomics, protein structure, midwest center for S genomics, MCSG, PSI-2; HET: MSE; 2.10A {Bacteroides thetaiotaomicron}
Probab=51.75 E-value=17 Score=28.75 Aligned_cols=36 Identities=22% Similarity=0.169 Sum_probs=29.3
Q ss_pred CCeEEEEEcCCccchhhHHHHHHHHHHcCCCEEEEE
Q 026778 165 DACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFIC 200 (233)
Q Consensus 165 ~~vvv~~~GDG~~~~G~~~Ealn~A~~~~lPvvfvv 200 (233)
...+++++.||..+.+...+++..+...++++..|-
T Consensus 111 ~~~~ivllTDG~~~~~~~~~~~~~~~~~~i~v~~ig 146 (218)
T 3ibs_A 111 VGRAIIVITDGENHEGGAVEAAKAAAEKGIQVSVLG 146 (218)
T ss_dssp CCEEEEEEECCTTCCSCHHHHHHHHHTTTEEEEEEE
T ss_pred CCcEEEEEcCCCCCCCcHHHHHHHHHhcCCEEEEEE
Confidence 457899999999999888888888888887765544
No 56
>2o1x_A 1-deoxy-D-xylulose-5-phosphate synthase; thiamin, isoprenoid, DXS, transferase; HET: TDP; 2.90A {Deinococcus radiodurans}
Probab=51.72 E-value=15 Score=35.28 Aligned_cols=73 Identities=16% Similarity=0.172 Sum_probs=42.5
Q ss_pred hhhhHHHHHhhhcCCCCeEEEEEcCCccchhhHHHHHHHHHHcCCCEEEEEecCCcc-ccccccccccCCCchhhhcccc
Q 026778 150 PHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWA-ISTPISDQFRSIPSLPCLSNIL 228 (233)
Q Consensus 150 ~~A~G~A~a~k~~~~~~vvv~~~GDG~~~~G~~~Ealn~A~~~~lPvvfvv~nN~~a-is~~~~~q~~~~~~~~~~~~~~ 228 (233)
..|+|+|++ |. +.++.++.+.. +=.+...++.++..++||+|++.+-+.. -..|++.+. ++ .+-+..+|
T Consensus 378 ~~a~G~A~~----G~-rp~~~~~~~F~--~~a~dqi~~~~a~~~~pvv~~~~~~g~~g~dG~tH~~~--~d-~a~~r~iP 447 (629)
T 2o1x_A 378 TTAAGMALQ----GM-RPVVAIYSTFL--QRAYDQVLHDVAIEHLNVTFCIDRAGIVGADGATHNGV--FD-LSFLRSIP 447 (629)
T ss_dssp HHHHHHHHT----TC-EEEEEEEHHHH--GGGHHHHHHTTTTTTCCCEEEEESBBCCCTTCTTTCBC--SH-HHHTTTST
T ss_pred HHHHHHHHc----CC-EEEEEecHHHH--HHHHHHHHHHHhhcCCCEEEEEECCccCCCCCcccCcc--HH-HHHHHccC
Confidence 345555554 42 45566677764 3334445788999999999999877752 123433331 22 24455666
Q ss_pred cccc
Q 026778 229 TILL 232 (233)
Q Consensus 229 ~~~~ 232 (233)
++.|
T Consensus 448 ~l~v 451 (629)
T 2o1x_A 448 GVRI 451 (629)
T ss_dssp TCEE
T ss_pred CcEE
Confidence 6543
No 57
>3kom_A Transketolase; rossmann fold, csgid, transferase, structural genomics, center for structural genomics of infectious DISE; HET: MSE; 1.60A {Francisella tularensis subsp}
Probab=51.08 E-value=32 Score=33.41 Aligned_cols=74 Identities=15% Similarity=0.080 Sum_probs=45.8
Q ss_pred chhhhHHHHHhhhcCCCCeEEEEEcCCccchhhHHHHHHHHHHcCCCEEEEEecCCccc--cccccccccCCCchhhhcc
Q 026778 149 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAI--STPISDQFRSIPSLPCLSN 226 (233)
Q Consensus 149 ~~~A~G~A~a~k~~~~~~vvv~~~GDG~~~~G~~~Ealn~A~~~~lPvvfvv~nN~~ai--s~~~~~q~~~~~~~~~~~~ 226 (233)
+..|+|+|+. +.-+.++..+.+-.. ...+++..++..++||+|+....+++. ..|++ .+.++ .+-+..
T Consensus 416 v~~a~GlA~~----gG~~P~~~tf~~F~~---~~~~~ir~~a~~~lpvv~~~t~~g~g~G~dG~TH--q~~ed-~a~lr~ 485 (663)
T 3kom_A 416 AAIMNGLSLY----GGIKPYGGTFLVFSD---YSRNAIRMSALMKQPVVHVMSHDSIGLGEDGPTH--QPIEH-VPSLRL 485 (663)
T ss_dssp HHHHHHHHHH----SSCEEEEEEEGGGHH---HHHHHHHHHHHTTCCCEEEEECCSGGGCTTCTTT--CCSSH-HHHHHT
T ss_pred HHHHHHHHHc----CCCEEEEEehHHHHH---HHHHHHHHHHhcCCCEEEEEeCCccccCCCCCCc--CCHHH-HHHHhc
Confidence 3456666654 222345555666542 346788889999999999987776654 35554 23333 345667
Q ss_pred cccccc
Q 026778 227 ILTILL 232 (233)
Q Consensus 227 ~~~~~~ 232 (233)
+|++.|
T Consensus 486 iPnl~V 491 (663)
T 3kom_A 486 IPNLSV 491 (663)
T ss_dssp STTCEE
T ss_pred CCCcEE
Confidence 777654
No 58
>3l84_A Transketolase; TKT, structural genomics, center for structur genomics of infectious diseases, csgid, transferase; HET: MSE; 1.36A {Campylobacter jejuni} PDB: 3m6l_A* 3m34_A* 3m7i_A*
Probab=47.93 E-value=35 Score=33.00 Aligned_cols=74 Identities=14% Similarity=0.006 Sum_probs=45.6
Q ss_pred chhhhHHHHHhhhcCCCCeEEEEEcCCccchhhHHHHHHHHHHcCCCEEEEEecCCccc--cccccccccCCCchhhhcc
Q 026778 149 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWAI--STPISDQFRSIPSLPCLSN 226 (233)
Q Consensus 149 ~~~A~G~A~a~k~~~~~~vvv~~~GDG~~~~G~~~Ealn~A~~~~lPvvfvv~nN~~ai--s~~~~~q~~~~~~~~~~~~ 226 (233)
+..|.|+|+. +.-..++..+.+=. + ..++++..++..++||+|+....+.+. ..|++ .+.++ .+-+..
T Consensus 395 v~~a~GlA~~----gG~~P~~~~f~~F~--~-~~~~~ir~~a~~~~pv~~~~t~~g~g~G~dG~TH--q~~ed-~a~lr~ 464 (632)
T 3l84_A 395 AAINNAFARY----GIFLPFSATFFIFS--E-YLKPAARIAALMKIKHFFIFTHDSIGVGEDGPTH--QPIEQ-LSTFRA 464 (632)
T ss_dssp HHHHHHHHHH----SSCEEEEEEEGGGH--H-HHHHHHHHHHHHTCCCEEEEECCSGGGCTTCGGG--SCSSH-HHHHHH
T ss_pred HHHHHHHHHc----CCCEEEEEecHHHH--H-HHHHHHHHHhccCCCEEEEEECCCcCCCCCCCCC--CCHhH-HHHHhc
Confidence 3456666654 21234555555433 2 456788889999999999987777653 45554 23333 455777
Q ss_pred cccccc
Q 026778 227 ILTILL 232 (233)
Q Consensus 227 ~~~~~~ 232 (233)
+|++.|
T Consensus 465 iP~l~V 470 (632)
T 3l84_A 465 MPNFLT 470 (632)
T ss_dssp SSSCEE
T ss_pred CCCCEE
Confidence 887754
No 59
>2x5n_A SPRPN10, 26S proteasome regulatory subunit RPN10; nuclear protein, nucleus, ubiquitin; 1.30A {Schizosaccharomyces pombe}
Probab=43.92 E-value=27 Score=28.22 Aligned_cols=35 Identities=6% Similarity=-0.162 Sum_probs=26.3
Q ss_pred CeEEEEEcCCccchhhHHHHHHHHHHcCCCEEEEE
Q 026778 166 ACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFIC 200 (233)
Q Consensus 166 ~vvv~~~GDG~~~~G~~~Ealn~A~~~~lPvvfvv 200 (233)
++++.+.||+..++++..+++..+...+..+.+|-
T Consensus 108 riiil~~~~~~~~~~~~~~~a~~lk~~gi~v~~Ig 142 (192)
T 2x5n_A 108 RIVAFVGSPIVEDEKNLIRLAKRMKKNNVAIDIIH 142 (192)
T ss_dssp EEEEEECSCCSSCHHHHHHHHHHHHHTTEEEEEEE
T ss_pred eEEEEEECCCCCCchhHHHHHHHHHHCCCEEEEEE
Confidence 34566667776678889999999999998875543
No 60
>1w85_B Pyruvate dehydrogenase E1 component, beta subunit; dehydrogenase, multienzyme complex, oxidoreductase; HET: TDP; 2.0A {Geobacillus stearothermophilus} SCOP: c.36.1.7 c.48.1.2 PDB: 1w88_B* 3dva_B* 3dv0_B* 3duf_B*
Probab=39.65 E-value=20 Score=31.31 Aligned_cols=72 Identities=13% Similarity=-0.031 Sum_probs=39.7
Q ss_pred chhhhHHHHHhhhcCCCCeEEE-EEcCCccchhhHHHHHH-HHHH--------cCCCEEEEEecCCccccccccccccCC
Q 026778 149 LPHAVGAAYALKMDRKDACAVT-YFGDGGTSEGDFHAALN-FSAV--------TEAPVIFICRNNGWAISTPISDQFRSI 218 (233)
Q Consensus 149 ~~~A~G~A~a~k~~~~~~vvv~-~~GDG~~~~G~~~Ealn-~A~~--------~~lPvvfvv~nN~~ais~~~~~q~~~~ 218 (233)
+..|.|+|++ |. +.+++ .+++.. + ..++.+. .++. .++|+|+++. .+.....+.+ +..+
T Consensus 63 v~~a~G~A~~----G~-rp~~~~t~~~F~-~--~a~dqi~~~~a~~~~~~~g~~~~pvv~~~~-~g~~~~~g~~--hs~~ 131 (324)
T 1w85_B 63 GGLAIGLALQ----GF-RPVPEIQFFGFV-Y--EVMDSICGQMARIRYRTGGRYHMPITIRSP-FGGGVHTPEL--HSDS 131 (324)
T ss_dssp HHHHHHHHHT----TC-EEEEBCSSGGGG-G--GTHHHHHTTGGGHHHHTTTSSCCCCEEEEE-ECSSSCCCTT--SSCC
T ss_pred HHHHHHHHhC----CC-EEEEEecchhHH-H--HHHHHHHHHHHHHhhhccCCCcCCEEEEEe-ccCCCCCCCc--cccc
Confidence 4445566554 32 33343 488886 2 3466664 3444 7999999986 4443333322 2223
Q ss_pred Cchhhhcccccccc
Q 026778 219 PSLPCLSNILTILL 232 (233)
Q Consensus 219 ~~~~~~~~~~~~~~ 232 (233)
+. .=+..+|++.|
T Consensus 132 ~~-a~~~~iP~l~V 144 (324)
T 1w85_B 132 LE-GLVAQQPGLKV 144 (324)
T ss_dssp CH-HHHTTSTTCEE
T ss_pred HH-HHHccCCCCEE
Confidence 44 44777887543
No 61
>3m49_A Transketolase; alpha-beta-alpha sandwich, csgid, transferase, structural genomics, center for structural genomics of infectious diseases; HET: MSE TDP PG5 TRS BTB; 2.00A {Bacillus anthracis} PDB: 3hyl_A*
Probab=38.93 E-value=48 Score=32.39 Aligned_cols=47 Identities=15% Similarity=0.252 Sum_probs=32.4
Q ss_pred HHHHHHHHHcCCCEEEEEecCCcc--ccccccccccCCCchhhhcccccccc
Q 026778 183 HAALNFSAVTEAPVIFICRNNGWA--ISTPISDQFRSIPSLPCLSNILTILL 232 (233)
Q Consensus 183 ~Ealn~A~~~~lPvvfvv~nN~~a--is~~~~~q~~~~~~~~~~~~~~~~~~ 232 (233)
..++..++..++||+|+....+++ ...|++ .+.+++ +-+..+|++.|
T Consensus 467 ~~air~~al~~lpVv~v~~~~gigvG~dG~TH--q~ied~-a~lr~iPnl~V 515 (690)
T 3m49_A 467 RPAIRLAALMQLPVTYVFTHDSIAVGEDGPTH--EPIEQL-AALRAMPNVSV 515 (690)
T ss_dssp HHHHHHHHHHTCCCEEEEECCSGGGCTTCGGG--CCSSHH-HHHHTSTTCEE
T ss_pred HHHHHHHHhcCCCcEEEEECCCcCCCCCCCcc--CCHHHH-HHHhcCCCCEE
Confidence 345778899999999999888764 345544 234443 55778887754
No 62
>1ik6_A Pyruvate dehydrogenase; E1BETA, tetramer, GXXXG, oxidoreductase; 2.00A {Pyrobaculum aerophilum} SCOP: c.36.1.7 c.48.1.2
Probab=38.43 E-value=38 Score=30.31 Aligned_cols=72 Identities=15% Similarity=-0.056 Sum_probs=34.0
Q ss_pred chhhhHHHHHhhhcCCCCeEEE-EEcCCccchhhHHHHHHH-HHHc--------CCCEEEEEecCCccccccccccccCC
Q 026778 149 LPHAVGAAYALKMDRKDACAVT-YFGDGGTSEGDFHAALNF-SAVT--------EAPVIFICRNNGWAISTPISDQFRSI 218 (233)
Q Consensus 149 ~~~A~G~A~a~k~~~~~~vvv~-~~GDG~~~~G~~~Ealn~-A~~~--------~lPvvfvv~nN~~ais~~~~~q~~~~ 218 (233)
+..|.|+|++ | -+.++. .++|.. + ..++.+.. ++.. ++|++|++..-+..-..+.+.+.
T Consensus 111 v~~a~G~A~~----G-~rpv~~~tf~~Fl--~-~a~Dqi~~~~a~~~~~~~g~~~~pvv~~~~~gg~~g~g~~hs~~--- 179 (369)
T 1ik6_A 111 LGFAMGMAMA----G-LKPVAEIQFVDFI--W-LGADELLNHIAKLRYRSGGNYKAPLVVRTPVGSGTRGGLYHSNS--- 179 (369)
T ss_dssp HHHHHHHHHT----T-CEEEEECCCC-------CCHHHHHHHHHHHHC------CCCCEEEEEECC--------------
T ss_pred HHHHHHHHHC----C-CeeEEEecchhHH--H-HHHHHHHHHHHHHHHhhCCCCCCCEEEEEeCCCCCCCCcccccc---
Confidence 3445566654 3 234444 388876 2 33555533 5544 99999999866632222222222
Q ss_pred Cchhhhcccccccc
Q 026778 219 PSLPCLSNILTILL 232 (233)
Q Consensus 219 ~~~~~~~~~~~~~~ 232 (233)
...=+..+|++.|
T Consensus 180 -~~a~l~~iPnl~V 192 (369)
T 1ik6_A 180 -PEAIFVHTPGLVV 192 (369)
T ss_dssp -HHHHHHTCTTCEE
T ss_pred -HHHHHcCCCCcEE
Confidence 2344777777754
No 63
>1umd_B E1-beta, 2-OXO acid dehydrogenase beta subunit; alpha(2)beta(2) tetramer, structural genomics; HET: TDP; 1.90A {Thermus thermophilus} SCOP: c.36.1.7 c.48.1.2 PDB: 1um9_B* 1umc_B* 1umb_B*
Probab=34.59 E-value=28 Score=30.26 Aligned_cols=72 Identities=15% Similarity=0.041 Sum_probs=40.4
Q ss_pred chhhhHHHHHhhhcCCCCeEEE-EEcCCccchhhHHHHHH-HHHH--------cCCCEEEEEecCCccccccccccccCC
Q 026778 149 LPHAVGAAYALKMDRKDACAVT-YFGDGGTSEGDFHAALN-FSAV--------TEAPVIFICRNNGWAISTPISDQFRSI 218 (233)
Q Consensus 149 ~~~A~G~A~a~k~~~~~~vvv~-~~GDG~~~~G~~~Ealn-~A~~--------~~lPvvfvv~nN~~ais~~~~~q~~~~ 218 (233)
+..|.|+|++. . +..++ .+++.. + ..++.+. .++. .++|+|+++. .++....+.+.+ .+
T Consensus 64 v~~a~G~A~~G----~-~p~~~~t~~~F~-~--~a~dqi~~~~a~~~~~~~g~~~~pvv~~~~-~g~~~~~g~~hs--~~ 132 (324)
T 1umd_B 64 VGAALGMAAHG----L-RPVAEIQFADYI-F--PGFDQLVSQVAKLRYRSGGQFTAPLVVRMP-SGGGVRGGHHHS--QS 132 (324)
T ss_dssp HHHHHHHHHHT----C-EEEEECSSGGGC-G--GGHHHHHHTTTTHHHHTTTSSCCCCEEEEE-ECSSSSCGGGSS--CC
T ss_pred HHHHHHHHHCC----C-EEEEEeccHhHH-H--HHHHHHHHHHHHHHhhcCCCCcCCEEEEEc-CCCCCCCCCccc--hh
Confidence 44566666653 2 34444 488885 3 3466664 3443 6899999887 354333333322 23
Q ss_pred Cchhhhcccccccc
Q 026778 219 PSLPCLSNILTILL 232 (233)
Q Consensus 219 ~~~~~~~~~~~~~~ 232 (233)
+. .-+..+|++.|
T Consensus 133 ~~-a~~~~iP~~~V 145 (324)
T 1umd_B 133 PE-AHFVHTAGLKV 145 (324)
T ss_dssp CH-HHHHTSTTCEE
T ss_pred HH-HHHhcCCCCEE
Confidence 33 55667777653
No 64
>3cf4_G Acetyl-COA decarboxylase/synthase epsilon subunit; methanomicrobia, iron-nikel-sulfur, 4Fe-NI-4S, oxidoreductas; 2.00A {Methanosarcina barkeri}
Probab=33.17 E-value=44 Score=26.15 Aligned_cols=33 Identities=9% Similarity=0.107 Sum_probs=27.8
Q ss_pred CeEEEEEcCCccchhhHHHHHHHHHHcCCCEEE
Q 026778 166 ACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIF 198 (233)
Q Consensus 166 ~vvv~~~GDG~~~~G~~~Ealn~A~~~~lPvvf 198 (233)
+.-+.++|.|....+...|...+|..+++||+-
T Consensus 35 krPvil~G~g~~~~~a~~~l~~lae~~~iPV~~ 67 (170)
T 3cf4_G 35 KRPLLMVGTLALDPELLDRVVKISKAANIPIAA 67 (170)
T ss_dssp SSEEEEECSTTCCHHHHHHHHHHHHHHTCCEEE
T ss_pred CCCEEEECCCccchhHHHHHHHHHHHhCCCEEE
Confidence 346778899988888888999999999999863
No 65
>3uk1_A Transketolase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, thiamine pyrophosphate; 2.15A {Burkholderia thailandensis} PDB: 3upt_A*
Probab=31.21 E-value=95 Score=30.45 Aligned_cols=74 Identities=16% Similarity=0.075 Sum_probs=44.2
Q ss_pred chhhhHHHHHhhhcCCCCeEEEEEcCCccchhhHHHHHHHHHHcCCCEEEEEecCCcc--ccccccccccCCCchhhhcc
Q 026778 149 LPHAVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNGWA--ISTPISDQFRSIPSLPCLSN 226 (233)
Q Consensus 149 ~~~A~G~A~a~k~~~~~~vvv~~~GDG~~~~G~~~Ealn~A~~~~lPvvfvv~nN~~a--is~~~~~q~~~~~~~~~~~~ 226 (233)
+..|+|+|+.. |. ..++..+.+ ..+ ....++..++..++||+|+....+.+ ...|++ .+.++ .+-+..
T Consensus 461 v~~AaGlA~~~---G~-~Pv~~~f~~--F~~-~~~~~ir~~a~~~lpv~~v~thdg~gvG~dG~TH--q~~ed-~a~lr~ 530 (711)
T 3uk1_A 461 SAAINGLVLHG---GY-KPFGGTFLT--FSD-YSRNALRVAALMKVPSIFVFTHDSIGLGEDGPTH--QSVEH-VASLRL 530 (711)
T ss_dssp HHHHHHHHHHS---SC-EEEEEEEGG--GHH-HHHHHHHHHHHHTCCCEEEEECCSGGGCTTCTTT--CCSSH-HHHHHT
T ss_pred HHHHHHHHHcC---CC-EEEEEEhHH--HHH-HHHHHHHHhhhcCCCEEEEEECCCcCcCCCCCcc--CChhH-HHHHhc
Confidence 44567777631 22 234444433 222 34577888899999999999777654 445554 23333 355778
Q ss_pred cccccc
Q 026778 227 ILTILL 232 (233)
Q Consensus 227 ~~~~~~ 232 (233)
+|++.|
T Consensus 531 iPnl~V 536 (711)
T 3uk1_A 531 IPNLDV 536 (711)
T ss_dssp STTCEE
T ss_pred CCCCEE
Confidence 887764
No 66
>1n3y_A Integrin alpha-X; alpha/beta rossmann fold, cell adhesion; 1.65A {Homo sapiens} SCOP: c.62.1.1
Probab=31.17 E-value=77 Score=24.33 Aligned_cols=36 Identities=11% Similarity=0.114 Sum_probs=26.6
Q ss_pred CCeEEEEEcCCccchhh--HHHHHHHHHHcCCCEEEEE
Q 026778 165 DACAVTYFGDGGTSEGD--FHAALNFSAVTEAPVIFIC 200 (233)
Q Consensus 165 ~~vvv~~~GDG~~~~G~--~~Ealn~A~~~~lPvvfvv 200 (233)
...+++++-||..+.+. ..+++..+...++++..|-
T Consensus 110 ~~~~iillTDG~~~~~~~~~~~~~~~~~~~gi~i~~ig 147 (198)
T 1n3y_A 110 AAKILIVITDGKKEGDSLDYKDVIPMADAAGIIRYAIG 147 (198)
T ss_dssp SEEEEEEEESSCCBSCSSCHHHHHHHHHHTTCEEEEEE
T ss_pred CceEEEEECCCCCCCCcccHHHHHHHHHHCCCEEEEEE
Confidence 35688999999988553 4777888888888765443
No 67
>2fwh_A Thiol:disulfide interchange protein DSBD; thioredoxin-like, C-terminal domain, reduced form at PH7, oxidoreductase; 0.99A {Escherichia coli} SCOP: c.47.1.1 PDB: 2fwe_A 2fwf_A 2fwg_A 1vrs_D 1uc7_A
Probab=30.44 E-value=63 Score=23.41 Aligned_cols=35 Identities=17% Similarity=0.169 Sum_probs=25.5
Q ss_pred CCCCeeEEeCCCCCCCC-CCCCCCCCHHHHHHHHHH
Q 026778 10 ERIPCYRVLDDDGQPFP-DSSFVKVSEGVAIKMYND 44 (233)
Q Consensus 10 ~~~~~~~vl~~~g~~~~-~~~~~~~s~e~l~~lyr~ 44 (233)
..+|.+-++|.+|+++. ....-..+.+++.++.+.
T Consensus 90 ~~~Pt~~~~d~~G~~v~~~~~~G~~~~~~l~~~l~~ 125 (134)
T 2fwh_A 90 LGLPTILFFDGQGQEHPQARVTGFMDAETFSAHLRD 125 (134)
T ss_dssp CSSSEEEEECTTSCBCGGGCBCSCCCHHHHHHHHHH
T ss_pred CCCCEEEEECCCCCEeeeeeeeeccCHHHHHHHHHh
Confidence 46899999999999873 122345688888877654
No 68
>2xgg_A Microneme protein 2; A/I domain, cell adhesion, hydrolase; 2.05A {Toxoplasma gondii}
Probab=27.37 E-value=1.3e+02 Score=22.95 Aligned_cols=36 Identities=14% Similarity=-0.032 Sum_probs=26.3
Q ss_pred CCeEEEEEcCCccchh-hHHHHHHHHHHcCCCEEEEE
Q 026778 165 DACAVTYFGDGGTSEG-DFHAALNFSAVTEAPVIFIC 200 (233)
Q Consensus 165 ~~vvv~~~GDG~~~~G-~~~Ealn~A~~~~lPvvfvv 200 (233)
...+++++-||..+.+ +..+++..+...++++..|-
T Consensus 122 ~~~~iillTDG~~~~~~~~~~~~~~l~~~gi~v~~ig 158 (178)
T 2xgg_A 122 VPKLVIGMTDGESDSDFRTVRAAKEIRELGGIVTVLA 158 (178)
T ss_dssp SCEEEEEEESSCCCHHHHHSHHHHHHHHTTCEEEEEE
T ss_pred CCEEEEEEcCCCCCCCccHHHHHHHHHHCCCEEEEEE
Confidence 3568999999999887 36677777777777665443
No 69
>3rim_A Transketolase, TK; TPP, transferase; HET: TPP; 2.49A {Mycobacterium tuberculosis}
Probab=27.00 E-value=1.2e+02 Score=29.60 Aligned_cols=47 Identities=15% Similarity=0.240 Sum_probs=31.8
Q ss_pred HHHHHHHHHcCCCEEEEEecCCcc--ccccccccccCCCchhhhcccccccc
Q 026778 183 HAALNFSAVTEAPVIFICRNNGWA--ISTPISDQFRSIPSLPCLSNILTILL 232 (233)
Q Consensus 183 ~Ealn~A~~~~lPvvfvv~nN~~a--is~~~~~q~~~~~~~~~~~~~~~~~~ 232 (233)
..++..++..++||+|+....+++ ...|++ .+.++ .+-+..+|++.|
T Consensus 472 ~~~ir~~al~~lpvv~v~thdg~gvG~dG~TH--q~ied-~a~lr~iPnl~V 520 (700)
T 3rim_A 472 RPAVRLAALMDIDTIYVWTHDSIGLGEDGPTH--QPIEH-LSALRAIPRLSV 520 (700)
T ss_dssp HHHHHHHHHHTCCCEEEEECCSGGGCTTCTTT--SCSSH-HHHHHTSTTCEE
T ss_pred HHHHHHhcCCCCCEEEEEeCCCcccCCCCCcc--CChhH-HHHHhcCCCCEE
Confidence 335778999999999999776654 445655 23333 355667887754
No 70
>2bfd_B 2-oxoisovalerate dehydrogenase beta subunit; oxidoreductase, multi-enzyme complex, acylation, oxidative decarboxylation, maple syrup urine disease; HET: TDP; 1.39A {Homo sapiens} SCOP: c.36.1.7 c.48.1.2 PDB: 1dtw_B* 1olu_B* 1ols_B* 1v11_B* 1v16_B* 1v1m_B* 1u5b_B* 1wci_B* 1v1r_B* 1x7x_B* 1x7w_B* 1x7z_B* 1x80_B* 2beu_B* 2bev_B* 2bew_B* 2bfb_B* 2bfc_B* 1x7y_B* 2bfe_B* ...
Probab=26.77 E-value=43 Score=29.43 Aligned_cols=72 Identities=10% Similarity=0.005 Sum_probs=39.3
Q ss_pred chhhhHHHHHhhhcCCCCeEEE-EEcCCccchhhHHHHHH-HHHHc--------CC-CEEEEEecCCccccccccccccC
Q 026778 149 LPHAVGAAYALKMDRKDACAVT-YFGDGGTSEGDFHAALN-FSAVT--------EA-PVIFICRNNGWAISTPISDQFRS 217 (233)
Q Consensus 149 ~~~A~G~A~a~k~~~~~~vvv~-~~GDG~~~~G~~~Ealn-~A~~~--------~l-Pvvfvv~nN~~ais~~~~~q~~~ 217 (233)
+..|.|+|++ |. +.+++ .++++.. ..++.+. .++.+ ++ |+++++..-+. ...|+ .++.
T Consensus 80 v~~a~G~A~~----G~-rp~~~~tf~~F~~---~a~dqi~~~~a~~~~~~~g~~~~~pvv~~~~~~g~-~~G~t--h~~~ 148 (342)
T 2bfd_B 80 VGFGIGIAVT----GA-TAIAEIQFADYIF---PAFDQIVNEAAKYRYRSGDLFNCGSLTIRSPWGCV-GHGAL--YHSQ 148 (342)
T ss_dssp HHHHHHHHHT----TC-CEEEECSSGGGCG---GGHHHHHTTGGGHHHHTTTSSCCTTEEEEEEESCC-SSCGG--GSSC
T ss_pred HHHHHHHHHC----CC-eeEEEecchhHHH---HHHHHHHHHHHHHHhhhcCCccCCCEEEEEecCCC-CCCcc--hhhH
Confidence 4445666655 32 34443 4899853 4466654 45543 44 99999876442 23333 2233
Q ss_pred CCchhhhcccccccc
Q 026778 218 IPSLPCLSNILTILL 232 (233)
Q Consensus 218 ~~~~~~~~~~~~~~~ 232 (233)
+++ .-+..+|++.|
T Consensus 149 ~d~-~~l~~iP~l~V 162 (342)
T 2bfd_B 149 SPE-AFFAHCPGIKV 162 (342)
T ss_dssp CCH-HHHHTSTTCEE
T ss_pred hHH-HHHhcCCCcEE
Confidence 444 33667777543
No 71
>1yd7_A 2-keto acid:ferredoxin oxidoreductase subunit alpha; structural genomics, southeast collaboratory for structural genomics, secsg; 2.30A {Pyrococcus furiosus}
Probab=26.19 E-value=27 Score=31.50 Aligned_cols=49 Identities=16% Similarity=0.289 Sum_probs=27.0
Q ss_pred hhHHHHHhhhcCCCCeEEEEEcCCccchhhHHHHHHHHHHcCCCEEEEEecCC
Q 026778 152 AVGAAYALKMDRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNG 204 (233)
Q Consensus 152 A~G~A~a~k~~~~~~vvv~~~GDG~~~~G~~~Ealn~A~~~~lPvvfvv~nN~ 204 (233)
|+|+|++..+.+. +.+++.-|.|-+. ..+.|..|+..++|+|+++-+-.
T Consensus 76 a~~~a~Gaa~aG~-r~~~~ts~~G~~~---~~d~l~~aa~~~~P~Vi~~~~~~ 124 (395)
T 1yd7_A 76 SIAAAIGASWAGA-KAMTATSGPGFSL---MQENIGYAVMTETPVVIVDVQRS 124 (395)
T ss_dssp HHHHHHHHHHTTC-CEEEEEETTHHHH---HTTTCC----CCCCEEEEEEC--
T ss_pred HHHHHHHHHHhCC-cEEEEeCchHHHH---HHHHHHHHHhcCCCEEEEEeeCC
Confidence 4444444444443 3566777887655 35667677788999988776543
No 72
>1qs0_B 2-oxoisovalerate dehydrogenase beta-subunit; heterotetramer, THDP cofactor, oxidoreductase; HET: TDP; 2.40A {Pseudomonas putida} SCOP: c.36.1.7 c.48.1.2 PDB: 2bp7_B
Probab=23.65 E-value=47 Score=29.00 Aligned_cols=73 Identities=16% Similarity=0.021 Sum_probs=39.0
Q ss_pred CchhhhHHHHHhhhcCCCCeEEE-EEcCCccchhhHHHHHH-HHHH--------cCCCEEEEEecCCccccccccccccC
Q 026778 148 QLPHAVGAAYALKMDRKDACAVT-YFGDGGTSEGDFHAALN-FSAV--------TEAPVIFICRNNGWAISTPISDQFRS 217 (233)
Q Consensus 148 ~~~~A~G~A~a~k~~~~~~vvv~-~~GDG~~~~G~~~Ealn-~A~~--------~~lPvvfvv~nN~~ais~~~~~q~~~ 217 (233)
.+..|.|+|++.. +..++ .++++. + ..++.+. .++. +++|+++++.+-+ ....++ ..+.
T Consensus 64 ~~~~a~G~A~~G~-----rp~~~~t~~~F~-~--~a~dqi~~~~a~~~~~~~~~~~~pvv~~~~~~g-~~~G~t--h~s~ 132 (338)
T 1qs0_B 64 IVGTAVGMGAYGL-----RPVVEIQFADYF-Y--PASDQIVSEMARLRYRSAGEFIAPLTLRMPCGG-GIYGGQ--THSQ 132 (338)
T ss_dssp HHHHHHHHHHHTC-----EEEEECSCGGGC-G--GGHHHHHTTTTTHHHHTTTSSCCCCEEEEEECC-SSSCCS--SSSC
T ss_pred HHHHHHHHHhCCC-----EEEEEeccHhHH-H--HHHHHHHHHHHHHhhhcCCCCCCCEEEEEeCCC-CCCCcc--cccc
Confidence 3445666666531 33443 489986 2 3466654 3543 3599999986554 333333 2222
Q ss_pred CCchhhhcccccccc
Q 026778 218 IPSLPCLSNILTILL 232 (233)
Q Consensus 218 ~~~~~~~~~~~~~~~ 232 (233)
.+ ..-+..+|++.|
T Consensus 133 ~d-~~~l~~iP~l~V 146 (338)
T 1qs0_B 133 SP-EAMFTQVCGLRT 146 (338)
T ss_dssp CC-HHHHTTSTTCEE
T ss_pred cH-HHHHhcCCCCEE
Confidence 33 344556666543
No 73
>2b2x_A Integrin alpha-1; computational design, antibody-antigen complex, immune syste; 2.20A {Rattus norvegicus} SCOP: c.62.1.1
Probab=23.46 E-value=1.3e+02 Score=23.71 Aligned_cols=35 Identities=9% Similarity=0.047 Sum_probs=25.4
Q ss_pred CCeEEEEEcCCccchhh-HHHHHHHHHHcCCCEEEE
Q 026778 165 DACAVTYFGDGGTSEGD-FHAALNFSAVTEAPVIFI 199 (233)
Q Consensus 165 ~~vvv~~~GDG~~~~G~-~~Ealn~A~~~~lPvvfv 199 (233)
...+++++-||..+.+. ..+++..+...++++..|
T Consensus 124 ~~~~iillTDG~~~~~~~~~~~~~~~~~~gi~v~~i 159 (223)
T 2b2x_A 124 VKKVMVIVTDGESHDNYRLKQVIQDCEDENIQRFSI 159 (223)
T ss_dssp SEEEEEEEESSCCTTGGGHHHHHHHHHTTTEEEEEE
T ss_pred CCeEEEEEcCCCCCCCccHHHHHHHHHHCCCEEEEE
Confidence 34689999999999885 667777776666665443
No 74
>1pt6_A Integrin alpha-1; cell adhesion; 1.87A {Homo sapiens} SCOP: c.62.1.1 PDB: 4a0q_A 1qcy_A 1qc5_A 1qc5_B 1ck4_A 1mhp_A
Probab=23.38 E-value=1.4e+02 Score=23.28 Aligned_cols=35 Identities=9% Similarity=0.076 Sum_probs=25.4
Q ss_pred CCeEEEEEcCCccchhh-HHHHHHHHHHcCCCEEEE
Q 026778 165 DACAVTYFGDGGTSEGD-FHAALNFSAVTEAPVIFI 199 (233)
Q Consensus 165 ~~vvv~~~GDG~~~~G~-~~Ealn~A~~~~lPvvfv 199 (233)
...+++++-||..+.+. ..+++..+...++++..|
T Consensus 109 ~~~~iillTDG~~~~~~~~~~~~~~~~~~gi~i~~i 144 (213)
T 1pt6_A 109 VKKVMVIVTDGESHDNHRLKKVIQDCEDENIQRFSI 144 (213)
T ss_dssp CEEEEEEEESSCCSCSHHHHHHHHHHHHTTEEEEEE
T ss_pred CCeEEEEEcCCCCCCCccHHHHHHHHHHCCCEEEEE
Confidence 35689999999999884 566777777677765443
No 75
>1m3s_A Hypothetical protein YCKF; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.95A {Bacillus subtilis} SCOP: c.80.1.3 PDB: 1viv_A
Probab=22.89 E-value=1.3e+02 Score=23.02 Aligned_cols=40 Identities=13% Similarity=0.013 Sum_probs=32.4
Q ss_pred cCCCCeEEEEEcCCccchhhHHHHHHHHHHcCCCEEEEEecC
Q 026778 162 DRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNN 203 (233)
Q Consensus 162 ~~~~~vvv~~~GDG~~~~G~~~Ealn~A~~~~lPvvfvv~nN 203 (233)
.+++.+++++-.-|.+. +.-+++..|...+.|+|.|..|.
T Consensus 77 ~~~~d~vI~iS~sG~t~--~~~~~~~~ak~~g~~vi~IT~~~ 116 (186)
T 1m3s_A 77 LAEGDLVIIGSGSGETK--SLIHTAAKAKSLHGIVAALTINP 116 (186)
T ss_dssp CCTTCEEEEECSSSCCH--HHHHHHHHHHHTTCEEEEEESCT
T ss_pred CCCCCEEEEEcCCCCcH--HHHHHHHHHHHCCCEEEEEECCC
Confidence 45677888888888874 46789999999999999888764
No 76
>3geb_A EYES absent homolog 2; hydrolase, activator, alternative splicing, cytoplasm, developmental protein, magnesium, nucleus, polymorphism; 2.40A {Homo sapiens} PDB: 3hb0_A 3hb1_A
Probab=22.09 E-value=76 Score=27.64 Aligned_cols=28 Identities=18% Similarity=0.156 Sum_probs=22.0
Q ss_pred CCeEEEEEcCCccchhhHHHHHHHHHHcCCCEEEE
Q 026778 165 DACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFI 199 (233)
Q Consensus 165 ~~vvv~~~GDG~~~~G~~~Ealn~A~~~~lPvvfv 199 (233)
+.+++|+|||| +|-=..|..++.|++=|
T Consensus 229 ~k~~yvvIGDG-------~eEe~AAk~~n~PFwrI 256 (274)
T 3geb_A 229 RKAVYVVIGDG-------VEEEQGAKKHNMPFWRI 256 (274)
T ss_dssp TTSEEEEEESS-------HHHHHHHHHTTCCEEEC
T ss_pred CCceEEEECCC-------HHHHHHHHHcCCCeEEe
Confidence 56899999999 55556788899998643
No 77
>1jeo_A MJ1247, hypothetical protein MJ1247; RUMP pathway, phosphosugar, 3-hexulose-6-phosphate isomerase structural genomics; HET: CME CIT; 2.00A {Methanocaldococcus jannaschii} SCOP: c.80.1.3
Probab=21.96 E-value=1.7e+02 Score=22.15 Aligned_cols=41 Identities=20% Similarity=0.177 Sum_probs=32.5
Q ss_pred cCCCCeEEEEEcCCccchhhHHHHHHHHHHcCCCEEEEEecCC
Q 026778 162 DRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNG 204 (233)
Q Consensus 162 ~~~~~vvv~~~GDG~~~~G~~~Ealn~A~~~~lPvvfvv~nN~ 204 (233)
.+++.+++++---|.+.+ ..+++..|...+.|+|.|..|.+
T Consensus 80 ~~~~d~vi~iS~sG~t~~--~~~~~~~ak~~g~~vi~IT~~~~ 120 (180)
T 1jeo_A 80 YEKDDLLILISGSGRTES--VLTVAKKAKNINNNIIAIVCECG 120 (180)
T ss_dssp CCTTCEEEEEESSSCCHH--HHHHHHHHHTTCSCEEEEESSCC
T ss_pred CCCCCEEEEEeCCCCcHH--HHHHHHHHHHCCCcEEEEeCCCC
Confidence 356778888888887754 68899999999999998887643
No 78
>2hc5_A ORF 99, hypothetical protein YVYC; NESG, GFT-PSI, protein structure initiative, northeast structural genomics consortium, alpha-beta, FLAG; NMR {Bacillus subtilis} SCOP: d.352.1.1
Probab=21.96 E-value=14 Score=28.12 Aligned_cols=32 Identities=13% Similarity=0.211 Sum_probs=23.6
Q ss_pred CCCCeeEEeCCC-CCCCCCCCCCCCCHHHHHHHHHHHH
Q 026778 10 ERIPCYRVLDDD-GQPFPDSSFVKVSEGVAIKMYNDMV 46 (233)
Q Consensus 10 ~~~~~~~vl~~~-g~~~~~~~~~~~s~e~l~~lyr~M~ 46 (233)
.+-..++|+|.+ |+++ ..++.|+++++.+.|.
T Consensus 66 ~~~~vVkVvD~~TgEVI-----RqIPpEe~L~l~~~l~ 98 (117)
T 2hc5_A 66 LNEYYVKVIEDSTNEVI-----REIPPKRWLDFYAAMT 98 (117)
T ss_dssp TTEEEEEEEETTTTEEE-----EEECHHHHHHHHHHHH
T ss_pred CCcEEEEEEECCCCcEE-----EeCChHHHHHHHHHHH
Confidence 345688999987 3443 3578999999998874
No 79
>1shu_X Anthrax toxin receptor 2; alpha/beta rossmann fold, membrane protein; 1.50A {Homo sapiens} SCOP: c.62.1.1 PDB: 1tzn_a 1sht_X 1t6b_Y*
Probab=21.48 E-value=1.6e+02 Score=22.01 Aligned_cols=36 Identities=17% Similarity=0.087 Sum_probs=23.3
Q ss_pred CCCeEEEEEcCCccchhhH---HHHHHHHHHcCCCEEEE
Q 026778 164 KDACAVTYFGDGGTSEGDF---HAALNFSAVTEAPVIFI 199 (233)
Q Consensus 164 ~~~vvv~~~GDG~~~~G~~---~Ealn~A~~~~lPvvfv 199 (233)
....+++++.||..+.+.. .++...+...++++..|
T Consensus 102 ~~~~~iiliTDG~~~~~~~~~~~~~~~~~~~~~i~i~~i 140 (182)
T 1shu_X 102 KTSSIIIALTDGKLDGLVPSYAEKEAKISRSLGASVYCV 140 (182)
T ss_dssp GSCEEEEEEECCCCCTTHHHHHHHHHHHHHHTTCEEEEE
T ss_pred CCCeEEEEECCCCcCCCCchhHHHHHHHHHhCCCEEEEE
Confidence 3457889999999876643 34555556666665444
No 80
>3etn_A Putative phosphosugar isomerase involved in capsu formation; YP_209877.1; HET: MSE CMK; 1.70A {Bacteroides fragilis nctc 9343}
Probab=21.30 E-value=1.6e+02 Score=23.66 Aligned_cols=41 Identities=12% Similarity=0.084 Sum_probs=32.3
Q ss_pred cCCCCeEEEEEcCCccchhhHHHHHHHHHH--cCCCEEEEEecCC
Q 026778 162 DRKDACAVTYFGDGGTSEGDFHAALNFSAV--TEAPVIFICRNNG 204 (233)
Q Consensus 162 ~~~~~vvv~~~GDG~~~~G~~~Ealn~A~~--~~lPvvfvv~nN~ 204 (233)
-+++.+++++---|.+ -+.-+++..|.. .+.|+|.|..|..
T Consensus 104 ~~~~DlvI~iS~SG~t--~~~i~~~~~ak~~~~Ga~vI~IT~~~~ 146 (220)
T 3etn_A 104 LQENDLLLLISNSGKT--REIVELTQLAHNLNPGLKFIVITGNPD 146 (220)
T ss_dssp CCTTCEEEEECSSSCC--HHHHHHHHHHHHHCTTCEEEEEESCTT
T ss_pred CCCCCEEEEEcCCCCC--HHHHHHHHHHHhcCCCCeEEEEECCCC
Confidence 3566788888888876 456899999999 9999999987643
No 81
>3nyt_A Aminotransferase WBPE; PLP binding, nucleotide-sugar binding; HET: ULP; 1.30A {Pseudomonas aeruginosa} PDB: 3nys_A* 3nyu_A* 3nu8_A* 3nu7_A* 3nub_A*
Probab=21.19 E-value=1.3e+02 Score=25.43 Aligned_cols=44 Identities=14% Similarity=0.191 Sum_probs=31.1
Q ss_pred HhHHHHHHHHHHhcCcccccccCcchHHHHHHHHhc-cCCCCeEecC
Q 026778 48 LQTMDTIFYEAQRQGRISFYLTTSGEEAINIASAAA-IKNDDFVVPQ 93 (233)
Q Consensus 48 ~R~~d~~~~~l~r~G~i~~~~~~~GqEa~~vg~~~a-L~~~D~~~~~ 93 (233)
.+.+++++.++.... .....+.|.||...++..+ ++++|.++..
T Consensus 37 ~~~l~~~la~~~~~~--~~~~~~sGt~al~~al~~~~~~~gd~Vi~~ 81 (367)
T 3nyt_A 37 VTELEDRLADFVGAK--YCISCANGTDALQIVQMALGVGPGDEVITP 81 (367)
T ss_dssp HHHHHHHHHHHHTCS--EEEEESCHHHHHHHHHHHTTCCTTCEEEEE
T ss_pred HHHHHHHHHHHhCCC--cEEEeCCHHHHHHHHHHHhCCCCcCEEEEC
Confidence 456777777766443 3345578999998888777 7899987643
No 82
>1sen_A Thioredoxin-like protein P19; endoplasmic reticulum, RP19, structural genomics, PSI, protein structure initiative; 1.20A {Homo sapiens} SCOP: c.47.1.1 PDB: 2k8v_A
Probab=20.96 E-value=1.7e+02 Score=22.15 Aligned_cols=36 Identities=22% Similarity=0.237 Sum_probs=24.8
Q ss_pred CCCCeeEEeCCCCCCCCCCCCC---------CCCHHHHHHHHHHH
Q 026778 10 ERIPCYRVLDDDGQPFPDSSFV---------KVSEGVAIKMYNDM 45 (233)
Q Consensus 10 ~~~~~~~vl~~~g~~~~~~~~~---------~~s~e~l~~lyr~M 45 (233)
..+|++-++|.+|+++....-. ..+.+++++..+.+
T Consensus 102 ~~~Pt~~~~d~~G~~~~~~~G~~~~~~~~~~~~~~~~l~~~l~~~ 146 (164)
T 1sen_A 102 GYIPRILFLDPSGKVHPEIINENGNPSYKYFYVSAEQVVQGMKEA 146 (164)
T ss_dssp SCSSEEEEECTTSCBCTTCCCTTSCTTSTTCCCSHHHHHHHHHHH
T ss_pred CcCCeEEEECCCCCEEEEEeCCCCccchhcccCCHHHHHHHHHHH
Confidence 3489999999999987532111 25777777777654
No 83
>1zzo_A RV1677; thioredoxin fold, structural genomics, PSI, protein structure initiative, TB structural genomics consortium, TBSGC; 1.60A {Mycobacterium tuberculosis} SCOP: c.47.1.10 PDB: 3ios_A
Probab=20.93 E-value=57 Score=22.78 Aligned_cols=34 Identities=15% Similarity=0.190 Sum_probs=24.5
Q ss_pred CCCCeeEEeCCCCCCCCCCCCCCCCHHHHHHHHHHH
Q 026778 10 ERIPCYRVLDDDGQPFPDSSFVKVSEGVAIKMYNDM 45 (233)
Q Consensus 10 ~~~~~~~vl~~~g~~~~~~~~~~~s~e~l~~lyr~M 45 (233)
..+|.+-++|++|+++ . .....+.+++.+..+.+
T Consensus 100 ~~~P~~~~id~~g~i~-~-~~g~~~~~~l~~~l~~~ 133 (136)
T 1zzo_A 100 TQQPAYAFVDPHGNVD-V-VRGRMSQDELTRRVTAL 133 (136)
T ss_dssp CSSSEEEEECTTCCEE-E-EESCCCHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCEE-E-EecCCCHHHHHHHHHHH
Confidence 3579999999999986 2 23446778887776654
No 84
>2i2w_A Phosphoheptose isomerase; lipopolysaccharide biosynthesis; 1.95A {Escherichia coli} PDB: 2i22_A 1x94_A
Probab=20.37 E-value=1.6e+02 Score=23.36 Aligned_cols=41 Identities=15% Similarity=0.207 Sum_probs=32.7
Q ss_pred cCCCCeEEEEEcCCccchhhHHHHHHHHHHcCCCEEEEEecCC
Q 026778 162 DRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNG 204 (233)
Q Consensus 162 ~~~~~vvv~~~GDG~~~~G~~~Ealn~A~~~~lPvvfvv~nN~ 204 (233)
..++.+++++---|.+ -+.-+++..|...+.|+|.|..+.+
T Consensus 129 ~~~~DvvI~iS~SG~t--~~~i~~~~~ak~~G~~vIaIT~~~~ 169 (212)
T 2i2w_A 129 GREGDVLLGISTSGNS--ANVIKAIAAAREKGMKVITLTGKDG 169 (212)
T ss_dssp CCTTCEEEEECSSSCC--HHHHHHHHHHHHHTCEEEEEEETTC
T ss_pred CCCCCEEEEEECCCCC--HHHHHHHHHHHHCCCeEEEEECCCC
Confidence 4566778877777776 4568999999999999999988754
No 85
>2a2p_A Selenoprotein M, SELM protein; redox enzyme, oxidoreductase; NMR {Mus musculus} SCOP: c.47.1.23
Probab=20.36 E-value=65 Score=25.01 Aligned_cols=33 Identities=9% Similarity=0.106 Sum_probs=25.3
Q ss_pred CCeeEEeCCCCCCCCCCCCCCCCHHHHHHHHHH
Q 026778 12 IPCYRVLDDDGQPFPDSSFVKVSEGVAIKMYND 44 (233)
Q Consensus 12 ~~~~~vl~~~g~~~~~~~~~~~s~e~l~~lyr~ 44 (233)
.|.+.++|.+|+.++.-.....+.+++.++++.
T Consensus 56 ~P~LvL~D~~G~e~E~I~Iekw~~d~I~efL~e 88 (129)
T 2a2p_A 56 DPELVLLSRNYQELERIPLSQMTRDEINALVQE 88 (129)
T ss_dssp CCEEEEECSSSCCCEEEECSSSCHHHHHHHHHH
T ss_pred CCEEEEecCCCCEEEEeecccCCHHHHHHHHHH
Confidence 478899999999876544556788888877654
No 86
>2lja_A Putative thiol-disulfide oxidoreductase; structural genomics, unknown function, thioredoxin-like; NMR {Bacteroides vulgatus}
Probab=20.34 E-value=80 Score=22.78 Aligned_cols=35 Identities=23% Similarity=0.501 Sum_probs=25.2
Q ss_pred CCCCeeEEeCCCCCCCCCCCCCCCCHHHHHHHHHHH
Q 026778 10 ERIPCYRVLDDDGQPFPDSSFVKVSEGVAIKMYNDM 45 (233)
Q Consensus 10 ~~~~~~~vl~~~g~~~~~~~~~~~s~e~l~~lyr~M 45 (233)
..+|.+=++|++|+++... ....+.+++.++.+.+
T Consensus 107 ~~~P~~~lid~~G~i~~~~-~g~~~~~~l~~~l~~~ 141 (152)
T 2lja_A 107 NGIPRFILLDRDGKIISAN-MTRPSDPKTAEKFNEL 141 (152)
T ss_dssp CSSCCEEEECTTSCEEESS-CCCTTCHHHHHHHHHH
T ss_pred CCCCEEEEECCCCeEEEcc-CCCCCHHHHHHHHHHH
Confidence 3579999999999987642 3346677777776654
No 87
>2xbl_A Phosphoheptose isomerase; capsule; HET: M7P PGE PG4; 1.62A {Burkholderia pseudomallei} PDB: 2x3y_A
Probab=20.25 E-value=1.6e+02 Score=22.60 Aligned_cols=41 Identities=15% Similarity=0.214 Sum_probs=32.0
Q ss_pred cCCCCeEEEEEcCCccchhhHHHHHHHHHHcCCCEEEEEecCC
Q 026778 162 DRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNG 204 (233)
Q Consensus 162 ~~~~~vvv~~~GDG~~~~G~~~Ealn~A~~~~lPvvfvv~nN~ 204 (233)
.+++.+++++---|.+. +..+++..|...+.|+|.|..|.+
T Consensus 114 ~~~~d~vI~iS~SG~t~--~~~~~~~~ak~~g~~vI~IT~~~~ 154 (198)
T 2xbl_A 114 GNEGDVLIGYSTSGKSP--NILAAFREAKAKGMTCVGFTGNRG 154 (198)
T ss_dssp CCTTCEEEEECSSSCCH--HHHHHHHHHHHTTCEEEEEECSCC
T ss_pred CCCCCEEEEEeCCCCCH--HHHHHHHHHHHCCCeEEEEECCCC
Confidence 45667777777777764 467999999999999999987654
No 88
>1lu4_A Soluble secreted antigen MPT53; thioredoxin-like fold, structural genomics, PSI, protein structure initiative; 1.12A {Mycobacterium tuberculosis} SCOP: c.47.1.10
Probab=20.01 E-value=64 Score=22.60 Aligned_cols=34 Identities=12% Similarity=0.064 Sum_probs=24.7
Q ss_pred CCCCeeEEeCCCCCCCCCCCC---CCCCHHHHHHHHHHH
Q 026778 10 ERIPCYRVLDDDGQPFPDSSF---VKVSEGVAIKMYNDM 45 (233)
Q Consensus 10 ~~~~~~~vl~~~g~~~~~~~~---~~~s~e~l~~lyr~M 45 (233)
..+|.+-++|++|+++ . .. ...+.+++.+..+.+
T Consensus 98 ~~~P~~~lid~~G~i~-~-~~~~~g~~~~~~l~~~l~~l 134 (136)
T 1lu4_A 98 PWQPAFVFYRADGTST-F-VNNPTAAMSQDELSGRVAAL 134 (136)
T ss_dssp CSSSEEEEECTTSCEE-E-ECCSSSCCCHHHHHHHHHHC
T ss_pred CCCCEEEEECCCCcEE-E-EEcCCCccCHHHHHHHHHHH
Confidence 4579999999999986 2 22 356788888776654
No 89
>2xhz_A KDSD, YRBH, arabinose 5-phosphate isomerase; lipopolysaccharide biogenesis; 2.60A {Escherichia coli}
Probab=20.00 E-value=1.5e+02 Score=22.60 Aligned_cols=41 Identities=17% Similarity=0.193 Sum_probs=32.2
Q ss_pred cCCCCeEEEEEcCCccchhhHHHHHHHHHHcCCCEEEEEecCC
Q 026778 162 DRKDACAVTYFGDGGTSEGDFHAALNFSAVTEAPVIFICRNNG 204 (233)
Q Consensus 162 ~~~~~vvv~~~GDG~~~~G~~~Ealn~A~~~~lPvvfvv~nN~ 204 (233)
.+++.+++++---|.+.+ ..+++..|...+.|+|.|..|..
T Consensus 94 ~~~~d~vI~iS~sG~t~~--~~~~~~~ak~~g~~vi~IT~~~~ 134 (183)
T 2xhz_A 94 VTPQDVVIAISNSGESSE--ITALIPVLKRLHVPLICITGRPE 134 (183)
T ss_dssp CCTTCEEEEECSSSCCHH--HHHHHHHHHTTTCCEEEEESCTT
T ss_pred CCCCCEEEEEeCCCCCHH--HHHHHHHHHHCCCCEEEEECCCC
Confidence 356778888877776655 58999999999999999987653
Done!