Query 026779
Match_columns 233
No_of_seqs 155 out of 372
Neff 5.5
Searched_HMMs 46136
Date Fri Mar 29 12:35:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026779.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026779hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2998 Uncharacterized conser 100.0 7.6E-51 1.6E-55 365.3 11.5 207 7-230 41-254 (302)
2 PF04727 ELMO_CED12: ELMO/CED- 100.0 1.9E-41 4.2E-46 283.5 12.4 150 78-231 2-152 (170)
3 KOG2999 Regulator of Rac1, req 99.9 3.7E-23 8.1E-28 198.9 10.2 160 67-230 274-447 (713)
4 PF04844 Ovate: Transcriptiona 52.3 20 0.00043 25.6 3.2 54 129-210 1-54 (59)
5 TIGR01568 A_thal_3678 uncharac 41.3 28 0.00061 25.4 2.6 56 128-210 6-61 (66)
6 KOG0673 Thymidylate synthase [ 40.2 36 0.00077 31.1 3.6 83 114-197 111-227 (293)
7 PF11588 DUF3243: Protein of u 34.0 15 0.00033 27.9 0.2 27 85-112 41-67 (81)
8 PF08262 Lem_TRP: Leucophaea m 32.2 18 0.0004 17.1 0.3 7 124-130 3-9 (10)
9 KOG4404 Tandem pore domain K+ 29.4 77 0.0017 30.1 4.1 88 70-163 33-142 (350)
10 PF03735 ENT: ENT domain; Int 25.4 1E+02 0.0022 22.8 3.4 31 70-104 25-55 (73)
No 1
>KOG2998 consensus Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=7.6e-51 Score=365.32 Aligned_cols=207 Identities=44% Similarity=0.741 Sum_probs=185.4
Q ss_pred CCcEEEEe-ecCCCCccccccCCCCCCCCCCCccccccccchhhcc-----cccccccccCCCcccccccCCHHHHHHHH
Q 026779 7 QGGCVAIR-TLSPSSSINRYSHAHGSAPGPAASDDATCGTPTWIGK-----GLTCVCFKRKGTYERICINLTPQQAERLR 80 (233)
Q Consensus 7 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~s~~~r-----~l~c~~~~~~~~~~~~~~~Lt~~Q~~~L~ 80 (233)
.|..+|++ +.|.+.+ +. .+.+.++.+...|+.+|+|+ ++.|.+.+.+..+..++..+.+.|++.++
T Consensus 41 ~g~~ra~~~e~sl~~~--~~------~~~~~ass~~~~~~~~~~~~v~~~~~i~~~~~~~r~~~~~~~~~~~~~~~~l~~ 112 (302)
T KOG2998|consen 41 EGASRAVRTETSLGQE--KP------LLGSTASSEAPPGLISFLGRVMVDKGIKNIVDPNRRIDLAACRHLIPGYRELLQ 112 (302)
T ss_pred CCCcceeecchhhhhh--hh------hhhcccccccChhhhhhhHHHHHHhccccCCCcccchhhhhccccccCcHHHHH
Confidence 45566666 4444443 11 45666888999999999999 99999999999999999999999999999
Q ss_pred HHHHhhccccCCCCHHHHHHHHHHHHHhCCCccCCCCChhhHhhhcCCCCCCCCCcccchhhhhhhHHHHHhhchHHHHH
Q 026779 81 RLKHRMKVYFDASRPDHQEALRALWAATYPDQELHGLISDQWKEMGWQGKDPSTDFRGAGFISLENLLFFAKTFSTSFQR 160 (233)
Q Consensus 81 ~L~~r~~~~~D~~n~~H~~~L~~Lw~~~~~~~~~~~~~~~~Wk~lGFQg~dP~TDFRg~GlLgL~~LlyFa~~~p~~f~~ 160 (233)
.+++++++|||.+|++|+++|++||+.++|+++++++++++|++|||||+||+|||||+|+|||+||+||+++||+.+++
T Consensus 113 ~~e~~~~~~yDs~n~~H~e~L~~lwk~~~p~~~l~~lvs~qW~emGfQG~dPsTDFRG~GfL~LeNLlyFa~~~~~~aq~ 192 (302)
T KOG2998|consen 113 RLEELRQEPYDSDNPDHEELLLDLWKLLYPDKELPGLVSKQWKEMGFQGADPSTDFRGMGFLGLENLLYFARTYPTSAQR 192 (302)
T ss_pred HHHHHHhccCCCCChhHHHHHHHHHHHhCCCCccchhHHHHHHHhccCCCCCCcccccchHHHHHHHHHHHHhhhHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCCCCCCcCchHHHHHHHHHHHHHHhhhhcC-CCCchhhhHHHHHhcCCCchhhhhhHHHHHHHhh
Q 026779 161 LLRKQGGKRADWEYPFAVAGVNITFMLMQMLDLEAT-KPRTFVRSVFLQMLSGRSLHDIVMVKHCCIYCQF 230 (233)
Q Consensus 161 ll~~q~~~~~~~~yPFAvasINiT~~L~~~L~l~~~-k~~~~~~~~F~~l~~~~~~af~~~~l~C~~~~~~ 230 (233)
++.+| +++.|+|||||||||||+|++++|++++. ++.++.+..| ++++|| ..++|+.|+.|
T Consensus 193 lL~~s--~~~r~eYpfAVvgINIT~m~~qmL~~eal~~~~~~~~~~~-----~~~~~F--~~lYc~af~~~ 254 (302)
T KOG2998|consen 193 LLLKS--RHPRWEYPFAVVGINITFMAIQMLDLEALKKHFNNIVKVF-----ETEPAF--DLLYCYAFLEF 254 (302)
T ss_pred HHHhc--CCCccCCceEEEeecHHHHHHHHHHhhhcccccccccccc-----ccHHHH--HHHHHHHHHHH
Confidence 99998 45669999999999999999999999998 5655556655 888998 99999999765
No 2
>PF04727 ELMO_CED12: ELMO/CED-12 family; InterPro: IPR006816 This entry represents the ELMO (EnguLfment and Cell MOtility) domain, which is found in a number of eukaryotic proteins involved in the cytoskeletal rearrangements required for phagocytosis of apoptotic cells and cell motility, including CED-12, ELMO-1 and ELMO-2. ELMO-1 and ELMO-2 are components of signalling pathways that regulate phagocytosis and cell migration and are mammalian orthologues of the Caenorhabditis elegans gene, ced-12 that is required for the engulfment of dying cells and cell migration. ELMO-1/2 act in association with DOCK1 and CRK. ELMO-1/2 interact with the SH3-domain of DOCK1 via an SH3-binding site to enhance the guanine nucleotide exchange factor (GEF) activity of DOCK1. ELMO-1/2 could be part of a complex with DOCK1 and Rac1 that could be required to activate Rac Rho small GTPases. Regulatory GTPases in the Ras superfamily employ a cycle of alternating GTP binding and hydrolysis, controlled by guanine nucleotide exchange factors and GTPase-activating proteins (GAPs), as essential features of their actions in cells. Within the Ras superfamily, the Arf family is composed of 30 members, including 22 Arf-like (Arl) proteins. The ELMO domain has been proposed to be a GAP domain for ARL2 and other members of the Arf family [].; GO: 0006909 phagocytosis, 0005856 cytoskeleton
Probab=100.00 E-value=1.9e-41 Score=283.46 Aligned_cols=150 Identities=36% Similarity=0.653 Sum_probs=132.8
Q ss_pred HHHHHHHhhccccCCCCHHHHHHHHHHHHHhCCCccCCCCChhhHhhhcCCCCCCCCCcccchhhhhhhHHHHHhhchHH
Q 026779 78 RLRRLKHRMKVYFDASRPDHQEALRALWAATYPDQELHGLISDQWKEMGWQGKDPSTDFRGAGFISLENLLFFAKTFSTS 157 (233)
Q Consensus 78 ~L~~L~~r~~~~~D~~n~~H~~~L~~Lw~~~~~~~~~~~~~~~~Wk~lGFQg~dP~TDFRg~GlLgL~~LlyFa~~~p~~ 157 (233)
.|+.|++++++|||++|++|+++|++||++++++.+.+++.+++|++|||||+||+|||||+|+|||+||+||+++||+.
T Consensus 2 ~l~~l~~~~~~~~d~~~~~h~~~L~~Lw~~~~~~~~~~~~~~~~W~~lGFQ~~dP~tDFR~~G~LgL~~L~yf~~~~~~~ 81 (170)
T PF04727_consen 2 TLNLLRALAKTPFDPENPEHEELLQELWNALFPDEPPFSRISEHWKELGFQGEDPATDFRGMGLLGLDCLLYFAENYPDE 81 (170)
T ss_pred hHHHHHHHHcCCCCCCCHHHHHHHHHHHHHhCCCCccCCcCccHHHHhCCCCCCcHHHHhhhhHHHHHHHHHHHHHChHH
Confidence 57889999999999999999999999999999998888999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCCCCCcCchHHHHHHHHHHHHHHhhhhcCCCCchhhhHHHHH-hcCCCchhhhhhHHHHHHHhhh
Q 026779 158 FQRLLRKQGGKRADWEYPFAVAGVNITFMLMQMLDLEATKPRTFVRSVFLQM-LSGRSLHDIVMVKHCCIYCQFY 231 (233)
Q Consensus 158 f~~ll~~q~~~~~~~~yPFAvasINiT~~L~~~L~l~~~k~~~~~~~~F~~l-~~~~~~af~~~~l~C~~~~~~~ 231 (233)
+++|+.++..+.+..+||||+||||||.+|+++|++++. .......+..+ +.+.+.+| .++||.+|.+|.
T Consensus 82 ~~~~l~~~~~~~~~~~~Pfa~~~invt~~l~~~l~~~~~--~~~~~~~~~~~~~~~~~~~f--~elf~~~f~~f~ 152 (170)
T PF04727_consen 82 FRRILREQSSRSDENWYPFAVASINVTSLLCELLKLGAL--DSEFYKRINFLSFFSSLEAF--EELFCACFQLFD 152 (170)
T ss_pred HHHHHHHccCcccccccHHHHHHHHHHHHHHHHHhhccc--CHHHhhcccccccCccHHHH--HHHHHHHHHHHH
Confidence 999999997776668999999999999999999999554 23333333333 55667777 899999998874
No 3
>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms]
Probab=99.89 E-value=3.7e-23 Score=198.88 Aligned_cols=160 Identities=21% Similarity=0.359 Sum_probs=146.8
Q ss_pred ccccCCHHHHHHHHHHHHhhccccCCCCHHHHHHHHHHHHHhCCCccCC-----------CCChhhHhhhcCCC-CCCCC
Q 026779 67 ICINLTPQQAERLRRLKHRMKVYFDASRPDHQEALRALWAATYPDQELH-----------GLISDQWKEMGWQG-KDPST 134 (233)
Q Consensus 67 ~~~~Lt~~Q~~~L~~L~~r~~~~~D~~n~~H~~~L~~Lw~~~~~~~~~~-----------~~~~~~Wk~lGFQg-~dP~T 134 (233)
.+++|+.+|...+..+..|+.++.|+.+++..+.++++-..+|.++..+ ....+..|++||.+ .||+.
T Consensus 274 ~~~~lyvlq~L~~glle~Rm~~~md~~~q~qr~~i~~lr~iaf~~~~~~~~~g~~~e~rk~l~~~~ykklgf~n~~npa~ 353 (713)
T KOG2999|consen 274 RPIQLYVLQVLTLGLLEVRMRTKMDPQDQVQRELISELRRIAFDDESEPSRRGGGAEVRKILDIESYKKLGFENRINPAQ 353 (713)
T ss_pred chHHHHHHHHHHHhhhHHhhhcccchhhHHHHHHHHHHHhcCcccccccccCCcchhhhhhhhHHHHHhhcccccCChHH
Confidence 3569999999999999999999999999999999999999999875432 35568999999999 99999
Q ss_pred Ccc--cchhhhhhhHHHHHhhchHHHHHHHHHhCCCCCCCcCchHHHHHHHHHHHHHHhhhhcCCCCchhhhHHHHHhcC
Q 026779 135 DFR--GAGFISLENLLFFAKTFSTSFQRLLRKQGGKRADWEYPFAVAGVNITFMLMQMLDLEATKPRTFVRSVFLQMLSG 212 (233)
Q Consensus 135 DFR--g~GlLgL~~LlyFa~~~p~~f~~ll~~q~~~~~~~~yPFAvasINiT~~L~~~L~l~~~k~~~~~~~~F~~l~~~ 212 (233)
||- .+|+|+|+||+||+++||+.+.+++.+++++.++++|||+.++|.+|+|||++|++ ++++++....|.+||+.
T Consensus 354 df~etppG~LAldnMvyFA~~~~~~y~riVlENSsRedkhecpfgr~sieltk~lcEilrV--ge~p~E~~~df~pmfFt 431 (713)
T KOG2999|consen 354 DFGETPPGRLALDNMVYFARNSPQDYRRIVLENSSREDKHECPFGRMSIELTKILCELLRV--GEPPDELDRDFIPMFFT 431 (713)
T ss_pred hcccCCchHHHHHHHHHHHHhCHHHHHHHHHhcccccccCcCCcCccHHHHHHHHHHHHhc--CCCchhhcCccceeeec
Confidence 996 89999999999999999999999999999999999999999999999999999999 45678889999999999
Q ss_pred CCchhhhhhHHHHHHHhh
Q 026779 213 RSLHDIVMVKHCCIYCQF 230 (233)
Q Consensus 213 ~~~af~~~~l~C~~~~~~ 230 (233)
+|..| +|+||+.--|+
T Consensus 432 hd~~F--ee~FciciqLl 447 (713)
T KOG2999|consen 432 HDTPF--EELFCICVQLL 447 (713)
T ss_pred CCCcH--HHHHHHHHHHH
Confidence 99999 99999876443
No 4
>PF04844 Ovate: Transcriptional repressor, ovate; InterPro: IPR006458 This group of sequences contain an uncharacterised domain of about 70 residues found exclusively in plants, generally toward the C terminus of proteins of 200 to 350 amino acids in length. At least 14 such proteins are found in Arabidopsis thaliana (Mouse-ear cress). Other regions of these proteins tend to consist largely of low-complexity sequence. Function is not known.
Probab=52.27 E-value=20 Score=25.61 Aligned_cols=54 Identities=22% Similarity=0.430 Sum_probs=34.2
Q ss_pred CCCCCCCcccchhhhhhhHHHHHhhchHHHHHHHHHhCCCCCCCcCchHHHHHHHHHHHHHHhhhhcCCCCchhhhHHHH
Q 026779 129 GKDPSTDFRGAGFISLENLLFFAKTFSTSFQRLLRKQGGKRADWEYPFAVAGVNITFMLMQMLDLEATKPRTFVRSVFLQ 208 (233)
Q Consensus 129 g~dP~TDFRg~GlLgL~~LlyFa~~~p~~f~~ll~~q~~~~~~~~yPFAvasINiT~~L~~~L~l~~~k~~~~~~~~F~~ 208 (233)
+.||..|||. +..+|+.+..-+ ..-.+-.+|...|.+++.+-+...-..|..
T Consensus 1 S~DP~~DFr~------------------SM~EMI~~~~i~----------~~~~LeeLL~cYL~LN~~~~H~~Iv~aF~d 52 (59)
T PF04844_consen 1 SSDPYEDFRE------------------SMVEMIEENGIR----------DWDDLEELLACYLSLNSPEHHKFIVEAFVD 52 (59)
T ss_pred CCCHHHHHHH------------------HHHHHHHHcCCC----------CHHHHHHHHHHHHHhCChhhhhHHHHHHHH
Confidence 4689999885 456666654211 334566777777787776666666666655
Q ss_pred Hh
Q 026779 209 ML 210 (233)
Q Consensus 209 l~ 210 (233)
++
T Consensus 53 v~ 54 (59)
T PF04844_consen 53 VW 54 (59)
T ss_pred HH
Confidence 54
No 5
>TIGR01568 A_thal_3678 uncharacterized plant-specific domain TIGR01568. This model describes an uncharacterized domain of about 70 residues found exclusively in plants, generally toward the C-terminus of proteins of 200 to 350 amino acids in length. At least 14 such proteins are found in Arabidopsis thaliana. Other regions of these proteins tend to consist largely of low-complexity sequence.
Probab=41.30 E-value=28 Score=25.41 Aligned_cols=56 Identities=30% Similarity=0.619 Sum_probs=35.0
Q ss_pred CCCCCCCCcccchhhhhhhHHHHHhhchHHHHHHHHHhCCCCCCCcCchHHHHHHHHHHHHHHhhhhcCCCCchhhhHHH
Q 026779 128 QGKDPSTDFRGAGFISLENLLFFAKTFSTSFQRLLRKQGGKRADWEYPFAVAGVNITFMLMQMLDLEATKPRTFVRSVFL 207 (233)
Q Consensus 128 Qg~dP~TDFRg~GlLgL~~LlyFa~~~p~~f~~ll~~q~~~~~~~~yPFAvasINiT~~L~~~L~l~~~k~~~~~~~~F~ 207 (233)
.+.||..|||. ++.+|+.+..-. ..| -.+-.+|...|.+++.+-+...-..|.
T Consensus 6 ~S~DPy~DFr~------------------SM~EMI~~~~i~-~~w--------~~LeeLL~cYL~LN~~~~H~~Iv~AF~ 58 (66)
T TIGR01568 6 ESDDPYEDFRR------------------SMEEMIEERELE-ADW--------KELEELLACYLDLNPKKSHRFIVRAFV 58 (66)
T ss_pred CCCChHHHHHH------------------HHHHHHHHcCCC-CCH--------HHHHHHHHHHHHhCCchhhhHHHHHHH
Confidence 57899999985 456666654211 111 346677777888776665665556665
Q ss_pred HHh
Q 026779 208 QML 210 (233)
Q Consensus 208 ~l~ 210 (233)
.++
T Consensus 59 dl~ 61 (66)
T TIGR01568 59 DIL 61 (66)
T ss_pred HHH
Confidence 554
No 6
>KOG0673 consensus Thymidylate synthase [Nucleotide transport and metabolism]
Probab=40.19 E-value=36 Score=31.08 Aligned_cols=83 Identities=20% Similarity=0.355 Sum_probs=64.9
Q ss_pred CCCCChhhHhhhcCCCCCCCCCcccchhhhhhhHHHHHhhchHHHHHHHHHhC---------------------------
Q 026779 114 LHGLISDQWKEMGWQGKDPSTDFRGAGFISLENLLFFAKTFSTSFQRLLRKQG--------------------------- 166 (233)
Q Consensus 114 ~~~~~~~~Wk~lGFQg~dP~TDFRg~GlLgL~~LlyFa~~~p~~f~~ll~~q~--------------------------- 166 (233)
+.+..+=+|+..|=+=.|=.+|+-|-|+=-|...+-=.++.|+. ++|+...-
T Consensus 111 lgpvyGfqWrHfgA~Y~~~~~dy~gqgvdQL~~vI~~ik~NP~d-rRIimsAwNP~dl~~malpPCH~~~QFyV~~GelS 189 (293)
T KOG0673|consen 111 LGPVYGFQWRHFGARYEDCDSDYTGQGVDQLADVINKIKNNPDD-RRIIMSAWNPLDLGKMALPPCHTFCQFYVANGELS 189 (293)
T ss_pred cccccceeeeecCccccccccccccccHHHHHHHHHHHhcCCcc-ceeeeeccCccccccccCCccceeeEEEecCCeee
Confidence 45677889999999999999999999999999999988999976 45543210
Q ss_pred ------CCCCCCcCchHHHHHH-HHHHHHHHhhhhcCC
Q 026779 167 ------GKRADWEYPFAVAGVN-ITFMLMQMLDLEATK 197 (233)
Q Consensus 167 ------~~~~~~~yPFAvasIN-iT~~L~~~L~l~~~k 197 (233)
+..-.-.-||.+|+-. +|.|+..+-+++.+.
T Consensus 190 cq~YQrS~dmglGVPFnIASYsLLT~miAhv~gl~pgd 227 (293)
T KOG0673|consen 190 CQMYQRSGDMGLGVPFNIASYSLLTCMIAHVCGLKPGD 227 (293)
T ss_pred ehhhhhccccccCccchhHHHHHHHHHHHHHhCCCCCc
Confidence 1123447899999876 588999888887653
No 7
>PF11588 DUF3243: Protein of unknown function (DUF3243); InterPro: IPR021637 This family of proteins with unknown function includes uncharacterised proteins ymfJ and yflH. The family appears to be restricted to Firmicutes.; PDB: 3D0W_B.
Probab=33.98 E-value=15 Score=27.88 Aligned_cols=27 Identities=19% Similarity=0.474 Sum_probs=14.8
Q ss_pred hhccccCCCCHHHHHHHHHHHHHhCCCc
Q 026779 85 RMKVYFDASRPDHQEALRALWAATYPDQ 112 (233)
Q Consensus 85 r~~~~~D~~n~~H~~~L~~Lw~~~~~~~ 112 (233)
..--.+||.|+ .+++|++||+.+..++
T Consensus 41 yLA~~vdP~N~-EerlLkELW~va~e~E 67 (81)
T PF11588_consen 41 YLAKNVDPKNP-EERLLKELWDVADEEE 67 (81)
T ss_dssp HHHT-----SH-HHHHHHHHHHC--HHH
T ss_pred HHHhcCCCCCH-HHHHHHHHHHhCCHHH
Confidence 44567899997 5699999999876443
No 8
>PF08262 Lem_TRP: Leucophaea maderae tachykinin-related peptide ; InterPro: IPR013206 These peptides are designated Leucophaea maderae (Madeira cockroach) tachykinin-related peptides (Lem TRPs). Some were isolated from the midgut of L. maderae, whereas others appear to be brain specific. The Lem TRPs of the brain are myotropic and induce increases in the amplitude and frequency of spontaneous contractions and tonus of hindgut muscle in L. maderae []. They were also isolated from brain-corpora, cardiaca-corpora, allata-suboesophageal ganglion extracts of Locusta migratoria (Migratory locust). They stimulate visceral muscle contractions of the oviduct and the foregut of L. migratoria [].
Probab=32.18 E-value=18 Score=17.06 Aligned_cols=7 Identities=43% Similarity=1.004 Sum_probs=5.0
Q ss_pred hhcCCCC
Q 026779 124 EMGWQGK 130 (233)
Q Consensus 124 ~lGFQg~ 130 (233)
.|||||.
T Consensus 3 smgf~g~ 9 (10)
T PF08262_consen 3 SMGFHGM 9 (10)
T ss_pred ccccccc
Confidence 3789873
No 9
>KOG4404 consensus Tandem pore domain K+ channel TASK3/THIK-1 [Inorganic ion transport and metabolism]
Probab=29.44 E-value=77 Score=30.14 Aligned_cols=88 Identities=26% Similarity=0.405 Sum_probs=58.1
Q ss_pred cCCHHHHHHHHHHHHhhccccCCCCHHHHHHHHHHHHHhCCCccCCCCChhhHh-------------hhcCCCCCCCCCc
Q 026779 70 NLTPQQAERLRRLKHRMKVYFDASRPDHQEALRALWAATYPDQELHGLISDQWK-------------EMGWQGKDPSTDF 136 (233)
Q Consensus 70 ~Lt~~Q~~~L~~L~~r~~~~~D~~n~~H~~~L~~Lw~~~~~~~~~~~~~~~~Wk-------------~lGFQg~dP~TDF 136 (233)
+-...+++++++.+.+.+.+|+-++++-+.+..-+- .+.| ...+.+|| .|||=.+.|+||-
T Consensus 33 e~E~~~r~~l~~~~~~~~~kyn~s~~d~r~~er~i~-~s~p-----h~ag~qWkF~GaFYFa~TVItTIGyGhstP~T~~ 106 (350)
T KOG4404|consen 33 ENEARERERLERRLANLKRKYNLSEEDYRELERVIL-KSEP-----HKAGPQWKFAGAFYFATTVITTIGYGHSTPSTDG 106 (350)
T ss_pred cchHHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHH-hcCc-----cccccccccCcceEEEEEEEeeeccCCCCCCCcC
Confidence 334567888888889999999988877666555443 3333 35678997 4789999999994
Q ss_pred c-----cchhhhhh-hHHHH---HhhchHHHHHHHH
Q 026779 137 R-----GAGFISLE-NLLFF---AKTFSTSFQRLLR 163 (233)
Q Consensus 137 R-----g~GlLgL~-~LlyF---a~~~p~~f~~ll~ 163 (233)
- .-|++|.. .|++| -|.--...+.+++
T Consensus 107 GK~Fcm~Yal~Gipl~lvmFqs~gERlnt~~ayil~ 142 (350)
T KOG4404|consen 107 GKAFCMFYALVGIPLTLVMFQSIGERLNTFVAYILR 142 (350)
T ss_pred ceehhhhHHHhcCchHHHHHHHHHHHHHHHHHHHHH
Confidence 2 55666665 34443 3554444444444
No 10
>PF03735 ENT: ENT domain; InterPro: IPR005491 This entry represents a protein regulator which is able to repress transcription, possibly via its interaction with a multi protein chromatin re-modeling complex that modifies the chromatin. Its interaction with BRCA2 suggests that it may play a central role in the DNA repair function of BRCA2 []. ; PDB: 1UZ3_B 1UTU_B 2FMM_E.
Probab=25.45 E-value=1e+02 Score=22.75 Aligned_cols=31 Identities=26% Similarity=0.458 Sum_probs=22.4
Q ss_pred cCCHHHHHHHHHHHHhhccccCCCCHHHHHHHHHH
Q 026779 70 NLTPQQAERLRRLKHRMKVYFDASRPDHQEALRAL 104 (233)
Q Consensus 70 ~Lt~~Q~~~L~~L~~r~~~~~D~~n~~H~~~L~~L 104 (233)
+||..|+..|..|++..++ +|.+|...|..+
T Consensus 25 ~lsweke~lLt~Lr~~L~I----S~e~H~~~l~~~ 55 (73)
T PF03735_consen 25 PLSWEKEKLLTELRKELNI----SDEEHREELRRA 55 (73)
T ss_dssp S--HHHHHHHHHHHHHTT------HHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhCC----CcHHHHHHHHHH
Confidence 3899999999999887766 477888887766
Done!