Query 026779
Match_columns 233
No_of_seqs 155 out of 372
Neff 5.5
Searched_HMMs 29240
Date Mon Mar 25 21:57:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026779.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/026779hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3d0w_A YFLH protein; GRAM-posi 30.8 17 0.00058 27.7 1.2 28 84-112 62-89 (104)
2 1uz3_A EMSY protein; chromatin 27.1 65 0.0022 24.4 3.9 31 70-104 42-72 (102)
3 2k19_A Putative piscicolin 126 23.8 55 0.0019 24.6 2.9 23 68-90 74-96 (98)
4 3o39_A Periplasmic protein rel 21.2 1.5E+02 0.0052 22.2 5.0 36 69-104 16-51 (108)
5 2fmm_E Protein EMSY; ENT domai 20.8 96 0.0033 24.5 3.9 49 70-126 34-90 (133)
6 2zrr_A Mundticin KS immunity p 20.5 51 0.0017 25.6 2.2 23 68-90 94-116 (118)
7 3itf_A Periplasmic adaptor pro 18.0 1.2E+02 0.0042 23.9 4.0 39 68-106 43-81 (145)
8 3oeo_A Spheroplast protein Y; 14.3 1.4E+02 0.0047 23.1 3.4 38 68-105 31-68 (138)
9 1g2y_A Hepatocyte nuclear fact 14.2 56 0.0019 19.7 0.8 15 69-83 3-17 (32)
10 2l14_B Cellular tumor antigen 14.2 89 0.003 20.6 1.8 15 98-112 4-18 (49)
No 1
>3d0w_A YFLH protein; GRAM-positive bacterium, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.00A {Bacillus subtilis}
Probab=30.82 E-value=17 Score=27.74 Aligned_cols=28 Identities=14% Similarity=0.271 Sum_probs=21.2
Q ss_pred HhhccccCCCCHHHHHHHHHHHHHhCCCc
Q 026779 84 HRMKVYFDASRPDHQEALRALWAATYPDQ 112 (233)
Q Consensus 84 ~r~~~~~D~~n~~H~~~L~~Lw~~~~~~~ 112 (233)
..+--.+||.|+ .+++|++||+.+..++
T Consensus 62 dyLA~~vdP~N~-EerlLkELW~Va~eeE 89 (104)
T 3d0w_A 62 DYLAKHEEPQNG-EEMLLQELWSVADEDE 89 (104)
T ss_dssp HHHHTCCCCCSH-HHHHHHHHHHHCCHHH
T ss_pred HHHHHcCCCCCH-HHHHHHHHHHhCCHHH
Confidence 345567899997 5699999999876443
No 2
>1uz3_A EMSY protein; chromatin regulator, chromatin regulators, royal family domain; 1.1A {Homo sapiens} SCOP: a.283.1.1 PDB: 1utu_A
Probab=27.14 E-value=65 Score=24.38 Aligned_cols=31 Identities=23% Similarity=0.398 Sum_probs=24.9
Q ss_pred cCCHHHHHHHHHHHHhhccccCCCCHHHHHHHHHH
Q 026779 70 NLTPQQAERLRRLKHRMKVYFDASRPDHQEALRAL 104 (233)
Q Consensus 70 ~Lt~~Q~~~L~~L~~r~~~~~D~~n~~H~~~L~~L 104 (233)
+||..|+..|..|++..++ +|.+|...|..+
T Consensus 42 ~Lsweke~LLt~LR~~L~I----S~eeH~~elrr~ 72 (102)
T 1uz3_A 42 DLTKEKKDLLGELSKVLSI----STERHRAEVRRA 72 (102)
T ss_dssp SCCHHHHHHHHHHHHHTTC----CHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhCC----CcHHHHHHHHHh
Confidence 4899999999998876655 588898887665
No 3
>2k19_A Putative piscicolin 126 immunity protein; PISI, bacteriocin, immune system, antimicrobial protein; NMR {Carnobacterium maltaromaticum}
Probab=23.82 E-value=55 Score=24.62 Aligned_cols=23 Identities=17% Similarity=0.390 Sum_probs=20.1
Q ss_pred cccCCHHHHHHHHHHHHhhcccc
Q 026779 68 CINLTPQQAERLRRLKHRMKVYF 90 (233)
Q Consensus 68 ~~~Lt~~Q~~~L~~L~~r~~~~~ 90 (233)
...||+.|.+.|+.|++.+++-|
T Consensus 74 ~i~Ls~~qs~~lK~Lr~Ls~IRY 96 (98)
T 2k19_A 74 GVTLSDYQSKKLKELTSISNIRY 96 (98)
T ss_dssp TCCCCHHHHHHHHHHHHHCSCCT
T ss_pred CcccCHHHHHHHHHHHHHHhhhc
Confidence 46899999999999999988765
No 4
>3o39_A Periplasmic protein related to spheroblast format; alpha-helical, structural genomics, montreal-kingston bacter structural genomics initiative; HET: MSE; 2.60A {Escherichia coli}
Probab=21.21 E-value=1.5e+02 Score=22.17 Aligned_cols=36 Identities=17% Similarity=0.332 Sum_probs=27.0
Q ss_pred ccCCHHHHHHHHHHHHhhccccCCCCHHHHHHHHHH
Q 026779 69 INLTPQQAERLRRLKHRMKVYFDASRPDHQEALRAL 104 (233)
Q Consensus 69 ~~Lt~~Q~~~L~~L~~r~~~~~D~~n~~H~~~L~~L 104 (233)
++||..|...++.|++..+...+....+..+.|..|
T Consensus 16 L~LTd~Qk~qir~L~~~~r~~~~~~~~~~r~~m~~L 51 (108)
T 3o39_A 16 LNLTDAQKQQIREIMKGQRDQMKRPPLEERRAMHDI 51 (108)
T ss_dssp SCCCHHHHHHHHHHHHTTTTSCCCCCHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 789999999999999888777765555444444444
No 5
>2fmm_E Protein EMSY; ENT domain, chromo shadow domain, EMSY protein, heterochroma protein 1, transcription; 1.80A {Homo sapiens} SCOP: a.283.1.1
Probab=20.82 E-value=96 Score=24.53 Aligned_cols=49 Identities=24% Similarity=0.393 Sum_probs=34.5
Q ss_pred cCCHHHHHHHHHHHHhhccccCCCCHHHHHHHHHHHHHhCCCccC--------CCCChhhHhhhc
Q 026779 70 NLTPQQAERLRRLKHRMKVYFDASRPDHQEALRALWAATYPDQEL--------HGLISDQWKEMG 126 (233)
Q Consensus 70 ~Lt~~Q~~~L~~L~~r~~~~~D~~n~~H~~~L~~Lw~~~~~~~~~--------~~~~~~~Wk~lG 126 (233)
+||..|+..|..|++..++ +|.+|...|..+-+ ++.+ .+..+.+|..-|
T Consensus 34 ~LSweke~LLt~LR~~L~I----S~eeH~~elrr~~s----De~l~~I~~~~~g~~s~~~W~~eg 90 (133)
T 2fmm_E 34 DLTKEKKDLLGELSKVLSI----STERHRAEVRRAVN----DERLTTIAHNMSGPNSSSEWSIEG 90 (133)
T ss_dssp SCCHHHHHHHHHHHHHTTC----CHHHHHHHHHHHHH----CHHHHHHHHHHHCSCCSHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHhCC----CcHHHHHHHHHhhh----HHHHHHHHHhhcCCcchHHHHHcc
Confidence 4899999999999877665 57888887766532 1211 224578998887
No 6
>2zrr_A Mundticin KS immunity protein; antiparallel four-helix bundle, antimicrobial protein; 1.80A {Enterococcus mundtii}
Probab=20.50 E-value=51 Score=25.61 Aligned_cols=23 Identities=17% Similarity=0.397 Sum_probs=16.8
Q ss_pred cccCCHHHHHHHHHHHHhhcccc
Q 026779 68 CINLTPQQAERLRRLKHRMKVYF 90 (233)
Q Consensus 68 ~~~Lt~~Q~~~L~~L~~r~~~~~ 90 (233)
...||+.|.+.|+.|++.+++-|
T Consensus 94 ~I~LS~~qs~~LK~Lr~LSnIRY 116 (118)
T 2zrr_A 94 GVSLNENQSKKLKELMSISNIRY 116 (118)
T ss_dssp TCCCCHHHHHHHHHHHTTC----
T ss_pred CcccCHHHHHHHHHHHHHHhhhc
Confidence 36799999999999999888765
No 7
>3itf_A Periplasmic adaptor protein CPXP; CPXR, CPXA, cpxrap, CPX-pathway, envelope stress, transduction; HET: MSE; 1.45A {Escherichia coli str} PDB: 3qzc_A
Probab=17.95 E-value=1.2e+02 Score=23.92 Aligned_cols=39 Identities=21% Similarity=0.241 Sum_probs=27.4
Q ss_pred cccCCHHHHHHHHHHHHhhccccCCCCHHHHHHHHHHHH
Q 026779 68 CINLTPQQAERLRRLKHRMKVYFDASRPDHQEALRALWA 106 (233)
Q Consensus 68 ~~~Lt~~Q~~~L~~L~~r~~~~~D~~n~~H~~~L~~Lw~ 106 (233)
.++||..|...|+.|.+..+.....-+.+..+.|..|..
T Consensus 43 ~L~LTdeQkqqir~L~~~~r~~~~~~~~~~r~~l~~Li~ 81 (145)
T 3itf_A 43 GISLTEHQRQQMRDLMQQARHEQPPVNVSELETMHRLVT 81 (145)
T ss_dssp TCCCCHHHHHHHHHHHHHHHHHSCCCCHHHHHHHHHHHT
T ss_pred cCCCCHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHc
Confidence 479999999999999876665554445555555555543
No 8
>3oeo_A Spheroplast protein Y; LTXXQ, extracytoplasmic stress response-related, signaling P; 2.70A {Escherichia coli}
Probab=14.26 E-value=1.4e+02 Score=23.13 Aligned_cols=38 Identities=16% Similarity=0.271 Sum_probs=27.5
Q ss_pred cccCCHHHHHHHHHHHHhhccccCCCCHHHHHHHHHHH
Q 026779 68 CINLTPQQAERLRRLKHRMKVYFDASRPDHQEALRALW 105 (233)
Q Consensus 68 ~~~Lt~~Q~~~L~~L~~r~~~~~D~~n~~H~~~L~~Lw 105 (233)
.++||..|+..|+.|.+...........+-.+.|..|.
T Consensus 31 ~L~LT~eQ~~qir~i~~~~r~~~~~~~~~~r~~l~~Li 68 (138)
T 3oeo_A 31 DLNLTDAQKQQIREIMKGQRDQMKRPPLEERRAMHDII 68 (138)
T ss_dssp CSCCCTTHHHHHHHHHHHHSSSSCCCCTTHHHHHHHHH
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 57999999999999988877666544444445566554
No 9
>1g2y_A Hepatocyte nuclear factor 1-alpha; dimerization domain, four-helix bundle, transcription factor, selenomethionine; 1.00A {Synthetic} SCOP: a.34.2.1 PDB: 1g39_A 1f93_E 1g2z_A 1jb6_A 2gyp_A
Probab=14.21 E-value=56 Score=19.70 Aligned_cols=15 Identities=33% Similarity=0.282 Sum_probs=12.1
Q ss_pred ccCCHHHHHHHHHHH
Q 026779 69 INLTPQQAERLRRLK 83 (233)
Q Consensus 69 ~~Lt~~Q~~~L~~L~ 83 (233)
.+||++|++.|..|-
T Consensus 3 skLs~LQ~eLL~aLL 17 (32)
T 1g2y_A 3 SKLSQLQTEMLAALL 17 (32)
T ss_dssp CHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHH
Confidence 578899999988763
No 10
>2l14_B Cellular tumor antigen P53; CBP, TAD, protein binding; NMR {Homo sapiens}
Probab=14.20 E-value=89 Score=20.56 Aligned_cols=15 Identities=27% Similarity=0.512 Sum_probs=10.8
Q ss_pred HHHHHHHHHHhCCCc
Q 026779 98 QEALRALWAATYPDQ 112 (233)
Q Consensus 98 ~~~L~~Lw~~~~~~~ 112 (233)
|+...+||+.+-++.
T Consensus 4 QETFSdLWkLLP~nn 18 (49)
T 2l14_B 4 QETFSDLWKLLPENN 18 (49)
T ss_dssp TTSHHHHHHHSSTTC
T ss_pred HHHHHHHHHhCCccc
Confidence 345788999987654
Done!