Query 026779
Match_columns 233
No_of_seqs 155 out of 372
Neff 5.5
Searched_HMMs 13730
Date Mon Mar 25 21:57:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026779.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/026779hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1uz3a1 a.283.1.1 (A:13-102) E 20.1 53 0.0038 22.6 3.9 31 70-104 30-60 (90)
2 d1hh1a_ c.52.1.18 (A:) Archaea 11.5 87 0.0063 22.7 3.3 43 39-87 33-76 (132)
3 d2c1wa1 d.294.1.1 (A:6-289) En 11.1 2.4E+02 0.018 22.7 6.4 57 91-152 124-180 (284)
4 d1olma1 a.5.3.1 (A:1-75) Super 10.5 1.2E+02 0.009 18.9 3.5 19 70-88 7-25 (75)
5 d1w36b1 c.37.1.19 (B:1-485) Ex 9.5 35 0.0026 27.7 0.4 39 92-132 388-427 (485)
6 d1wpba_ a.233.1.1 (A:) Hypothe 8.4 1.7E+02 0.012 21.9 4.0 41 66-107 2-42 (168)
7 d1dxea_ c.1.12.5 (A:) 2-dehydr 7.9 1.1E+02 0.0082 23.9 3.0 54 82-135 177-236 (253)
8 d1f28a_ d.117.1.1 (A:) Thymidy 7.6 1.7E+02 0.012 23.8 4.0 46 112-157 105-150 (295)
9 d1gxqa_ a.4.6.1 (A:) PhoB {Esc 7.3 1.7E+02 0.013 19.1 3.4 34 68-106 28-61 (105)
10 d1ys7a1 a.4.6.1 (A:128-233) Tr 6.8 2.8E+02 0.02 17.9 4.4 34 68-106 30-63 (106)
No 1
>d1uz3a1 a.283.1.1 (A:13-102) Emsy {Human (Homo sapiens) [TaxId: 9606]}
Probab=20.07 E-value=53 Score=22.57 Aligned_cols=31 Identities=23% Similarity=0.356 Sum_probs=24.6
Q ss_pred cCCHHHHHHHHHHHHhhccccCCCCHHHHHHHHHH
Q 026779 70 NLTPQQAERLRRLKHRMKVYFDASRPDHQEALRAL 104 (233)
Q Consensus 70 ~Lt~~Q~~~L~~L~~r~~~~~D~~n~~H~~~L~~L 104 (233)
+||..|+..|..|++..+ .+|.+|...|..+
T Consensus 30 ~lsweke~lLt~LR~~L~----IS~eeHr~elrr~ 60 (90)
T d1uz3a1 30 DLTKEKKDLLGELSKVLS----ISTERHRAEVRRA 60 (90)
T ss_dssp SCCHHHHHHHHHHHHHTT----CCHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhC----CCcHHHHHHHHHh
Confidence 489999999999876655 5688898777765
No 2
>d1hh1a_ c.52.1.18 (A:) Archaeal Holliday junction resolvase Hjc {Archaeon Sulfolobus solfataricus [TaxId: 2287]}
Probab=11.46 E-value=87 Score=22.74 Aligned_cols=43 Identities=14% Similarity=0.086 Sum_probs=30.0
Q ss_pred cccccccchhhcccccccccccCCCcc-cccccCCHHHHHHHHHHHHhhc
Q 026779 39 DDATCGTPTWIGKGLTCVCFKRKGTYE-RICINLTPQQAERLRRLKHRMK 87 (233)
Q Consensus 39 ~~~~~g~~s~~~r~l~c~~~~~~~~~~-~~~~~Lt~~Q~~~L~~L~~r~~ 87 (233)
.++++|++. .|.+.-.|++.. +..+.++..|.+.|...-++.+
T Consensus 33 pDlvA~~~~------~~~~IEvKst~~~~~~iyi~~eqve~L~~f~~~fG 76 (132)
T d1hh1a_ 33 PDIIALKNG------VIILIEMKSRKDIEGKIYVRREQAEGIIEFARKSG 76 (132)
T ss_dssp CSEEEEETT------EEEEEEECCEECTTSCEEECHHHHHHHHHHHHHHT
T ss_pred CcEEeccCC------EEEEEEEEeecCCcccEEECHHHHHHHHHHHHHcC
Confidence 478887765 456666676653 3456789999999988766653
No 3
>d2c1wa1 d.294.1.1 (A:6-289) EndoU {African clawed frog (Xenopus laevis) [TaxId: 8355]}
Probab=11.07 E-value=2.4e+02 Score=22.66 Aligned_cols=57 Identities=21% Similarity=0.334 Sum_probs=38.3
Q ss_pred CCCCHHHHHHHHHHHHHhCCCccCCCCChhhHhhhcCCCCCCCCCcccchhhhhhhHHHHHh
Q 026779 91 DASRPDHQEALRALWAATYPDQELHGLISDQWKEMGWQGKDPSTDFRGAGFISLENLLFFAK 152 (233)
Q Consensus 91 D~~n~~H~~~L~~Lw~~~~~~~~~~~~~~~~Wk~lGFQg~dP~TDFRg~GlLgL~~LlyFa~ 152 (233)
..+..+..+.|..||=..+....-....+..++.+ |-|+- -||.++.|+.|-++|..
T Consensus 124 ~~s~~~Fk~~L~~lWF~~Y~R~~g~~~dSSgFEHV-FvGE~----k~g~~V~G~HNWi~fy~ 180 (284)
T d2c1wa1 124 KPTRNDFKVQLYNIWFQLYSRAPGSRPDSCGFEHV-FVGES----KRGQEMMGLHNWVQFYL 180 (284)
T ss_dssp CSSHHHHHHHHHHHHHSCBCC--CCCCCBCHHHHH-TTSCS----SSSCSCCCCCCHHHHHH
T ss_pred CCCHHHHHHHHHHhcccCcccCCCCCCCCCCcceE-eeccc----cCCCcccceehHHHHHH
Confidence 34557789999999988876543222345566555 55651 26778999999998863
No 4
>d1olma1 a.5.3.1 (A:1-75) Supernatant protein factor (SPF), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=10.45 E-value=1.2e+02 Score=18.87 Aligned_cols=19 Identities=26% Similarity=0.593 Sum_probs=16.8
Q ss_pred cCCHHHHHHHHHHHHhhcc
Q 026779 70 NLTPQQAERLRRLKHRMKV 88 (233)
Q Consensus 70 ~Lt~~Q~~~L~~L~~r~~~ 88 (233)
+||+.|++.|..+++....
T Consensus 7 elt~~q~~~l~elr~~l~~ 25 (75)
T d1olma1 7 DLSPRQKEALAKFRENVQD 25 (75)
T ss_dssp BCCHHHHHHHHHHHHHHGG
T ss_pred cCCHHHHHHHHHHHHHHHh
Confidence 7999999999999988764
No 5
>d1w36b1 c.37.1.19 (B:1-485) Exodeoxyribonuclease V beta chain (RecB), N-terminal domain {Escherichia coli [TaxId: 562]}
Probab=9.51 E-value=35 Score=27.73 Aligned_cols=39 Identities=26% Similarity=0.575 Sum_probs=26.7
Q ss_pred CCCHHHHHHHHHHHHHhCCCccCCCCChhhHhhh-cCCCCCC
Q 026779 92 ASRPDHQEALRALWAATYPDQELHGLISDQWKEM-GWQGKDP 132 (233)
Q Consensus 92 ~~n~~H~~~L~~Lw~~~~~~~~~~~~~~~~Wk~l-GFQg~dP 132 (233)
.+|+.+.++|+.||... +...+ -.+|+.|.-| ||.|.||
T Consensus 388 Dts~~Q~~ll~~L~~~~-~~~~l-~~VGD~kQSIY~FRgad~ 427 (485)
T d1w36b1 388 DTDPQQYRIFRRIWHHQ-PETAL-LLIGDPKQAIYAFRGADI 427 (485)
T ss_dssp GCCHHHHHHHHHHHTTC-TTCEE-EEEECGGGCCCGGGTCCH
T ss_pred cCCHHHHHHHHHHHhCC-CCCeE-EEEecCcchhccccCCCH
Confidence 35788889999998532 11111 1368888866 8999987
No 6
>d1wpba_ a.233.1.1 (A:) Hypothetical protein YfbU {Escherichia coli [TaxId: 562]}
Probab=8.41 E-value=1.7e+02 Score=21.88 Aligned_cols=41 Identities=15% Similarity=0.186 Sum_probs=29.6
Q ss_pred cccccCCHHHHHHHHHHHHhhccccCCCCHHHHHHHHHHHHH
Q 026779 66 RICINLTPQQAERLRRLKHRMKVYFDASRPDHQEALRALWAA 107 (233)
Q Consensus 66 ~~~~~Lt~~Q~~~L~~L~~r~~~~~D~~n~~H~~~L~~Lw~~ 107 (233)
++.++||..|+..|.+..+.+. ..||+|.++-+.++++-..
T Consensus 2 e~~M~lt~~eRLiL~nq~~il~-~L~pena~~y~r~~~ive~ 42 (168)
T d1wpba_ 2 ESTMEMTNAQRLILSNQYKMMT-MLDPANAERYRRLQTIIER 42 (168)
T ss_dssp CCGGGCCHHHHHHHHHHHHHHH-HHCGGGHHHHHHHHHHHHH
T ss_pred CcccccCHHHHHHHHHHHHHHH-hhCccccccHHHHHHHHHc
Confidence 4567899999999988766665 5588888776666654433
No 7
>d1dxea_ c.1.12.5 (A:) 2-dehydro-3-deoxy-galactarate aldolase {Escherichia coli [TaxId: 562]}
Probab=7.91 E-value=1.1e+02 Score=23.88 Aligned_cols=54 Identities=19% Similarity=0.174 Sum_probs=36.7
Q ss_pred HHHhhccccCCCCHHHHHHHHHHHHHhCCCccC----C--CCChhhHhhhcCCCCCCCCC
Q 026779 82 LKHRMKVYFDASRPDHQEALRALWAATYPDQEL----H--GLISDQWKEMGWQGKDPSTD 135 (233)
Q Consensus 82 L~~r~~~~~D~~n~~H~~~L~~Lw~~~~~~~~~----~--~~~~~~Wk~lGFQg~dP~TD 135 (233)
|..-++.|-+.+++++++++.++-+++...... . ....++|.++||+=-.-.+|
T Consensus 177 Ls~slG~~g~~~~p~v~~ai~~v~~~~~~~gk~~g~~~~~~~~~~~~~~~G~~~i~~g~D 236 (253)
T d1dxea_ 177 LAAALGHLGNASHPDVQKAIQHIFNRASAHGKPSGILAPVEADARRYLEWGATFVAVGSD 236 (253)
T ss_dssp HHHHTTCTTCTTSHHHHHHHHHHHHHHHHTTCCEEEECCSHHHHHHHHHTTCCEEEEEEH
T ss_pred HHhhccCCCCCCChhHHHHHHHHHHHHHHcCCCeEEecCCHHHHHHHHHcCCCEEEehHH
Confidence 444567777899999999999998887543221 1 12236899999986444444
No 8
>d1f28a_ d.117.1.1 (A:) Thymidylate synthase {Pneumocystis carinii [TaxId: 4754]}
Probab=7.62 E-value=1.7e+02 Score=23.76 Aligned_cols=46 Identities=24% Similarity=0.346 Sum_probs=36.7
Q ss_pred ccCCCCChhhHhhhcCCCCCCCCCcccchhhhhhhHHHHHhhchHH
Q 026779 112 QELHGLISDQWKEMGWQGKDPSTDFRGAGFISLENLLFFAKTFSTS 157 (233)
Q Consensus 112 ~~~~~~~~~~Wk~lGFQg~dP~TDFRg~GlLgL~~LlyFa~~~p~~ 157 (233)
..+.+..+.+|+..|..-.+-.+|..|.|+=-|..++--.++.|.+
T Consensus 105 gdlGp~YG~qwr~~~~~~~~~~~~~~~~g~DQl~~vi~~lk~nP~s 150 (295)
T d1f28a_ 105 GDLGPIYGFQWRHFGAEYIDCKTNYIGQGVDQLANIIQKIRTSPYD 150 (295)
T ss_dssp TBCCSCHHHHHHHBTCCCCCTTSCCTTCSBCHHHHHHHHHHHCTTC
T ss_pred CCcccccchhhhhcCCccccccccCCCcCcHHHHHHHHhhhcCCCc
Confidence 3456788999999999988899999999876666666666777764
No 9
>d1gxqa_ a.4.6.1 (A:) PhoB {Escherichia coli [TaxId: 562]}
Probab=7.26 E-value=1.7e+02 Score=19.09 Aligned_cols=34 Identities=12% Similarity=0.341 Sum_probs=29.3
Q ss_pred cccCCHHHHHHHHHHHHhhccccCCCCHHHHHHHHHHHH
Q 026779 68 CINLTPQQAERLRRLKHRMKVYFDASRPDHQEALRALWA 106 (233)
Q Consensus 68 ~~~Lt~~Q~~~L~~L~~r~~~~~D~~n~~H~~~L~~Lw~ 106 (233)
...||+.+-+.|..|-+..+..++ +++++..+|.
T Consensus 28 ~i~Lt~~E~~lL~~L~~~~g~vvs-----r~~L~~~vw~ 61 (105)
T d1gxqa_ 28 PLEMGPTEFKLLHFFMTHPERVYS-----REQLLNHVWG 61 (105)
T ss_dssp ECCCCHHHHHHHHHHHHSCSSEEC-----HHHHHHHHTC
T ss_pred EEEccHHHHHHHHHHHhCcccccc-----HHHHhccccC
Confidence 478999999999999888888776 7888999995
No 10
>d1ys7a1 a.4.6.1 (A:128-233) Transcriptional regulatory protein PrrA {Mycobacterium tuberculosis [TaxId: 1773]}
Probab=6.84 E-value=2.8e+02 Score=17.94 Aligned_cols=34 Identities=18% Similarity=0.356 Sum_probs=28.6
Q ss_pred cccCCHHHHHHHHHHHHhhccccCCCCHHHHHHHHHHHH
Q 026779 68 CINLTPQQAERLRRLKHRMKVYFDASRPDHQEALRALWA 106 (233)
Q Consensus 68 ~~~Lt~~Q~~~L~~L~~r~~~~~D~~n~~H~~~L~~Lw~ 106 (233)
...||+.+-..|..|-+..+..++ .++++..+|.
T Consensus 30 ~i~Lt~~E~~lL~~L~~~~g~~vs-----r~~L~~~vw~ 63 (106)
T d1ys7a1 30 DVDLTKREFDLLAVLAEHKTAVLS-----RAQLLELVWG 63 (106)
T ss_dssp ECCCCHHHHHHHHHHHHTTTCCBC-----HHHHHHHHHC
T ss_pred EEECCHHHhHHHHHHhhhhhhhhh-----HHHHHhhhcC
Confidence 468999999999999888777776 7788999994
Done!