BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 026780
         (233 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1NZE|A Chain A, Crystal Structure Of Psbq Polypeptide Of Photosystem Ii
           From Higher Plants
 pdb|1VYK|A Chain A, Crystal Structure Of Psbq Protein Of Photosystem Ii From
           Higher Plants
          Length = 149

 Score =  171 bits (434), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 87/149 (58%), Positives = 105/149 (70%), Gaps = 1/149 (0%)

Query: 86  DATPIKVXXXXXXXXXXXXTLNSDEPRDLDLPL-KERFFIQPLSPXXXXXXXXXXXKDIL 144
           +A PI V            T NSD+ RD  LP  K+RF++QPL P            +IL
Sbjct: 1   EARPIVVGPPPPLSGGLPGTENSDQARDGTLPYTKDRFYLQPLPPTEAAQRAKVSASEIL 60

Query: 145 NVKELIDKKAWPYVQNDLRLRASYLRYDLNTIISAKPKDEKQSLKNLTGKLFQTIGNLDH 204
           NVK+ ID+KAWP +QNDLRLRASYLRYDL T+ISAKPKDEK+SL+ LT KLF +I NLDH
Sbjct: 61  NVKQFIDRKAWPSLQNDLRLRASYLRYDLKTVISAKPKDEKKSLQELTSKLFSSIDNLDH 120

Query: 205 AAKIKSTPEAEKYYAETVSTLNDVLSKVG 233
           AAKIKS  EAEKYY +TVS +N+VL+K+G
Sbjct: 121 AAKIKSPTEAEKYYGQTVSNINEVLAKLG 149


>pdb|3LS0|A Chain A, Crystal Structure Of Cyanobacterial Psbq From
           Synechocystis Sp. Pcc 6803
 pdb|3LS1|A Chain A, Crystal Structure Of Cyanobacterial Psbq From
           Synechocystis Sp. Pcc 6803 Complexed With Zn2+
 pdb|3LS1|B Chain B, Crystal Structure Of Cyanobacterial Psbq From
           Synechocystis Sp. Pcc 6803 Complexed With Zn2+
          Length = 133

 Score = 29.3 bits (64), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 23/86 (26%), Positives = 44/86 (51%), Gaps = 2/86 (2%)

Query: 146 VKELIDKKAWPYVQNDLRLRASYLRYDLNTIISAK-PKDEKQSLKNLTGKLFQTIGNLDH 204
           ++ LI  + W   Q  +      LR D+  + S+  PKD+ ++ K L  ++F  +  LD 
Sbjct: 43  LQGLIADQNWVDTQTYIHGPLGQLRRDMLGLASSLLPKDQDKA-KTLAKEVFGHLERLDA 101

Query: 205 AAKIKSTPEAEKYYAETVSTLNDVLS 230
           AAK ++  +A+  Y E ++  +  L+
Sbjct: 102 AAKDRNGSQAKIQYQEALADFDSFLN 127


>pdb|2PQL|A Chain A, Crystal Structure Of Anopheles Gambiae D7r4-Tryptamine
           Complex
 pdb|2QEB|A Chain A, Crystal Structure Of Anopheles Gambiae D7r4-Histamine
           Complex
 pdb|2QEB|B Chain B, Crystal Structure Of Anopheles Gambiae D7r4-Histamine
           Complex
 pdb|2QEH|A Chain A, Crystal Structure Of Anopheles Gambiae D7r4-Serotonin
           Complex
 pdb|2QEO|A Chain A, Crystal Structure Of Anopheles Gambiae D7r4-norepinephrine
           Complex
 pdb|2QEO|B Chain B, Crystal Structure Of Anopheles Gambiae D7r4-norepinephrine
           Complex
 pdb|2QEV|A Chain A, Crystal Structure Of Anopheles Gambiae D7r4
          Length = 145

 Score = 28.9 bits (63), Expect = 2.7,   Method: Compositional matrix adjust.
 Identities = 14/43 (32%), Positives = 23/43 (53%)

Query: 185 KQSLKNLTGKLFQTIGNLDHAAKIKSTPEAEKYYAETVSTLND 227
           K  LK+ TG+ F+ + +L    K    P+ ++Y AE V  + D
Sbjct: 96  KCLLKSTTGRTFKKVFDLMELKKAGKVPQHQRYTAEFVQIMKD 138


>pdb|2QZW|A Chain A, Secreted Aspartic Proteinase (Sap) 1 From Candida Albicans
 pdb|2QZW|B Chain B, Secreted Aspartic Proteinase (Sap) 1 From Candida Albicans
          Length = 341

 Score = 27.7 bits (60), Expect = 5.7,   Method: Compositional matrix adjust.
 Identities = 17/70 (24%), Positives = 34/70 (48%), Gaps = 2/70 (2%)

Query: 13  GSSHSQAVLEGSFQLSGPNRLNAPSNSRVAVARPGFTVRAQQASNEPETSRRAMLGLVAA 72
           G  H+  V +   Q SG    N  +N++++V    FT     A+ +P    + +LG+  A
Sbjct: 245 GQGHTFYVTD--CQTSGTVDFNFDNNAKISVPASEFTAPLSYANGQPYPKCQLLLGISDA 302

Query: 73  GVASGSFVQA 82
            +   +F+++
Sbjct: 303 NILGDNFLRS 312


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.313    0.128    0.351 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,351,653
Number of Sequences: 62578
Number of extensions: 180032
Number of successful extensions: 387
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 382
Number of HSP's gapped (non-prelim): 7
length of query: 233
length of database: 14,973,337
effective HSP length: 96
effective length of query: 137
effective length of database: 8,965,849
effective search space: 1228321313
effective search space used: 1228321313
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 50 (23.9 bits)