BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 026780
(233 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q41932|PSBQ2_ARATH Oxygen-evolving enhancer protein 3-2, chloroplastic OS=Arabidopsis
thaliana GN=PSBQ2 PE=1 SV=2
Length = 230
Score = 333 bits (854), Expect = 7e-91, Method: Compositional matrix adjust.
Identities = 167/235 (71%), Positives = 199/235 (84%), Gaps = 7/235 (2%)
Query: 1 MAQAMASMAGLRGSSHSQAVLEGSFQLSGPNRLNAPSNSRVAVA--RPGFTVRAQQASNE 58
MAQA+ SMAGLRG+S QAVLEGS Q++G NRLN SRV+V R G +RAQQ +
Sbjct: 1 MAQAVTSMAGLRGAS--QAVLEGSLQINGSNRLNI---SRVSVGSQRTGLVIRAQQNVSV 55
Query: 59 PETSRRAMLGLVAAGVASGSFVQAVLADATPIKVGPPPPPSGGLPGTLNSDEPRDLDLPL 118
PE+SRR+++GLVAAG+A GSFV+AV A+A PIKVG PP PSGGLPGT NSD+ RD L L
Sbjct: 56 PESSRRSVIGLVAAGLAGGSFVKAVFAEAIPIKVGGPPLPSGGLPGTDNSDQARDFSLAL 115
Query: 119 KERFFIQPLSPAQAAERAKASAKDILNVKELIDKKAWPYVQNDLRLRASYLRYDLNTIIS 178
K+RF+IQPLSP +AA RAK SAK+I+NVK IDKKAWPYVQNDLRLRASYLRYDLNT+IS
Sbjct: 116 KDRFYIQPLSPTEAAARAKDSAKEIINVKSFIDKKAWPYVQNDLRLRASYLRYDLNTVIS 175
Query: 179 AKPKDEKQSLKNLTGKLFQTIGNLDHAAKIKSTPEAEKYYAETVSTLNDVLSKVG 233
AKPK+EKQSLK+LT KLFQTI NLD+AA+ KS+P+AEKYY+ETVS+LN+VL+K+G
Sbjct: 176 AKPKEEKQSLKDLTAKLFQTIDNLDYAARSKSSPDAEKYYSETVSSLNNVLAKLG 230
>sp|P12301|PSBQ_SPIOL Oxygen-evolving enhancer protein 3, chloroplastic OS=Spinacia
oleracea GN=PSBQ PE=1 SV=1
Length = 232
Score = 306 bits (784), Expect = 7e-83, Method: Compositional matrix adjust.
Identities = 168/234 (71%), Positives = 196/234 (83%), Gaps = 3/234 (1%)
Query: 1 MAQAMASMAGLRGSSHSQAVLEGSFQLSGPNRLNAPSNSRVAVARPGFTVRAQQASNEPE 60
MAQAMASMAGLRG+S QAVLEGS Q+SG NRL+ P+ SRVAV + G +RAQQ S E E
Sbjct: 1 MAQAMASMAGLRGAS--QAVLEGSLQISGSNRLSGPTTSRVAVPKMGLNIRAQQVSAEAE 58
Query: 61 TSRRAMLGLVAAGVASGSFVQAVLADATPIKVGPPPPPSGGLPGTLNSDEPRDLDLPL-K 119
TSRRAMLG VAAG+ASGSFV+AVLA+A PI VGPPPP SGGLPGT NSD+ RD LP K
Sbjct: 59 TSRRAMLGFVAAGLASGSFVKAVLAEARPIVVGPPPPLSGGLPGTENSDQARDGTLPYTK 118
Query: 120 ERFFIQPLSPAQAAERAKASAKDILNVKELIDKKAWPYVQNDLRLRASYLRYDLNTIISA 179
+RF++QPL P +AA+RAK SA +ILNVK+ ID+KAWP +QNDLRLRASYLRYDL T+ISA
Sbjct: 119 DRFYLQPLPPTEAAQRAKVSASEILNVKQFIDRKAWPSLQNDLRLRASYLRYDLKTVISA 178
Query: 180 KPKDEKQSLKNLTGKLFQTIGNLDHAAKIKSTPEAEKYYAETVSTLNDVLSKVG 233
KPKDEK+SL+ LT KLF +I NLDHAAKIKS EAEKYY +TVS +N+VL+K+G
Sbjct: 179 KPKDEKKSLQELTSKLFSSIDNLDHAAKIKSPTEAEKYYGQTVSNINEVLAKLG 232
>sp|Q9XFT3|PSBQ1_ARATH Oxygen-evolving enhancer protein 3-1, chloroplastic OS=Arabidopsis
thaliana GN=PSBQ1 PE=1 SV=3
Length = 224
Score = 301 bits (770), Expect = 3e-81, Method: Compositional matrix adjust.
Identities = 161/231 (69%), Positives = 188/231 (81%), Gaps = 9/231 (3%)
Query: 5 MASMAGLRGSSHSQAVLEGSFQLSGPNRLNAPSNSRVAVA-RPGFTVRAQQASNEPETSR 63
MASM GL G+S AVLEGS +++G +RLN + RVAVA R VRAQQ+ ETSR
Sbjct: 1 MASMGGLHGAS--PAVLEGSLKINGSSRLNG--SGRVAVAQRSRLVVRAQQSE---ETSR 53
Query: 64 RAMLGLVAAGVASGSFVQAVLADATPIKVGPPPPPSGGLP-GTLNSDEPRDLDLPLKERF 122
R+++GLVAAG+A GSFVQAVLADA IKVGPPP PSGGLP GT NSD+ RD L LK+RF
Sbjct: 54 RSVIGLVAAGLAGGSFVQAVLADAISIKVGPPPAPSGGLPAGTDNSDQARDFALALKDRF 113
Query: 123 FIQPLSPAQAAERAKASAKDILNVKELIDKKAWPYVQNDLRLRASYLRYDLNTIISAKPK 182
++QPL P +AA RAK SAKDI+NVK LID+KAWPYVQNDLR +ASYLRYDLNTIIS+KPK
Sbjct: 114 YLQPLPPTEAAARAKESAKDIINVKPLIDRKAWPYVQNDLRSKASYLRYDLNTIISSKPK 173
Query: 183 DEKQSLKNLTGKLFQTIGNLDHAAKIKSTPEAEKYYAETVSTLNDVLSKVG 233
DEK+SLK+LT KLF TI NLD+AAK KS +AEKYYAETVS LN+VL+K+G
Sbjct: 174 DEKKSLKDLTTKLFDTIDNLDYAAKKKSPSQAEKYYAETVSALNEVLAKLG 224
>sp|Q41048|PSBQ1_MAIZE Oxygen-evolving enhancer protein 3-1, chloroplastic OS=Zea mays
GN=PSBQ1 PE=2 SV=1
Length = 217
Score = 241 bits (616), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 146/235 (62%), Positives = 172/235 (73%), Gaps = 20/235 (8%)
Query: 1 MAQAMASMAGLRGSSHSQAVLEGSFQLSGPNRLNAPSNSRVAVARPGFTVRAQ-QASNEP 59
MAQAMASM GL SQ VL P+R A S +R AV VRA +
Sbjct: 1 MAQAMASMTGL-----SQGVL--------PSR-RADSRTRTAV----VIVRASAEGDAVA 42
Query: 60 ETSRRAMLGLVAAGVASGSFVQAVLADAT-PIKVGPPPPPSGGLPGTLNSDEPRDLDLPL 118
+ RRA++GLVA G+ G+ QA A+ IK+G PPPPSGGLPGTLNSD+ RD DLPL
Sbjct: 43 QAGRRAVIGLVATGIVGGALSQAARAETVKTIKIGAPPPPSGGLPGTLNSDQARDFDLPL 102
Query: 119 KERFFIQPLSPAQAAERAKASAKDILNVKELIDKKAWPYVQNDLRLRASYLRYDLNTIIS 178
KERF++QPL PA+AA R K SA+DI+N+K LIDKKAWPYVQNDLRLRASYLRYDL T+I+
Sbjct: 103 KERFYLQPLPPAEAAARVKTSAQDIINLKPLIDKKAWPYVQNDLRLRASYLRYDLKTVIA 162
Query: 179 AKPKDEKQSLKNLTGKLFQTIGNLDHAAKIKSTPEAEKYYAETVSTLNDVLSKVG 233
+KPK+EK+SLK LTGKLF TI +LDHAAKIKSTPEAEKY+A T L DVL+K+G
Sbjct: 163 SKPKEEKKSLKELTGKLFSTIDDLDHAAKIKSTPEAEKYFAATKDALGDVLAKLG 217
>sp|O22591|PSBQ_ONOVI Oxygen-evolving enhancer protein 3, chloroplastic OS=Onobrychis
viciifolia GN=PSBQ PE=2 SV=1
Length = 231
Score = 238 bits (607), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 147/243 (60%), Positives = 178/243 (73%), Gaps = 22/243 (9%)
Query: 1 MAQAMASMAGLRGSSHSQAVLEGSFQLSGPNRLNAPSNSRVAVARPGFTVRA-------- 52
MAQAMAS +LEGS QL + ++ S+ A F VRA
Sbjct: 1 MAQAMAS-----------GLLEGSLQLMSGSNRSSSSSRTRGPAGV-FIVRAQQQEQQQG 48
Query: 53 -QQASNEPETSRRAMLGLVAAGVASGSFVQAVLADATPIKVGPPPPPSGGLPGTLNSDEP 111
++ +P+++RRAMLGLVA G+AS SFVQAVLA+A PIKVG PPPPSGGL GTLNSDE
Sbjct: 49 MSSSAADPQSNRRAMLGLVATGLASASFVQAVLAEAKPIKVGGPPPPSGGLGGTLNSDEA 108
Query: 112 RDLDLPLKERFFIQPLSPAQAAERAKASAKDILNVKELIDKKAWPYVQNDLRLRASYLRY 171
RDL LPLKERF+IQPLSP +AA+R + SAK+I+ VK+ ID+K NDLRLRASYLRY
Sbjct: 109 RDLKLPLKERFYIQPLSPTEAAQRQRESAKEIVAVKKFIDQKLGHMFINDLRLRASYLRY 168
Query: 172 DLNTIISAKPKDEKQSLKNLT-GKLFQTIGNLDHAAKIKSTPEAEKYYAETVSTLNDVLS 230
DLNT+IS+KPK++KQSLK + GKLFQ I NLD+AAK+KS P+AEKYYA+ VSTLNDVLS
Sbjct: 169 DLNTVISSKPKEQKQSLKESSAGKLFQDIDNLDYAAKLKSAPQAEKYYADAVSTLNDVLS 228
Query: 231 KVG 233
K+G
Sbjct: 229 KIG 231
>sp|Q41806|PSBQ2_MAIZE Oxygen-evolving enhancer protein 3-2, chloroplastic OS=Zea mays
GN=PSBQ2 PE=3 SV=1
Length = 213
Score = 218 bits (554), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 134/234 (57%), Positives = 160/234 (68%), Gaps = 22/234 (9%)
Query: 1 MAQAMASMAGLRGSSHSQAVLEGSFQLSGPNRLNAPSNSRVAVARPGFTVRAQQASNEPE 60
MAQAMASM GL SQ V + A S +R AV + + + P
Sbjct: 1 MAQAMASMTGL-----SQGVCPAA----------ADSRTRTAVVVVRASAEGDRCAGGPR 45
Query: 61 TSRRAMLGLVAAGVASGSFVQAVLADAT-PIKVGPPPPPSGGLPGTLNSDEPRDLDLPLK 119
R + A +S QAV A+ IK+G PPPPSGGLPGTLNSD+ RD DLPLK
Sbjct: 46 CDR------LVATASSPPLSQAVHAETVKTIKIGAPPPPSGGLPGTLNSDQTRDFDLPLK 99
Query: 120 ERFFIQPLSPAQAAERAKASAKDILNVKELIDKKAWPYVQNDLRLRASYLRYDLNTIISA 179
ERF++QPL PA+A R K SA+DI+N+K LIDKKAWPYVQNDLRLRASYLRYDL T+I++
Sbjct: 100 ERFYLQPLPPAEAVARVKTSAQDIINLKPLIDKKAWPYVQNDLRLRASYLRYDLKTVIAS 159
Query: 180 KPKDEKQSLKNLTGKLFQTIGNLDHAAKIKSTPEAEKYYAETVSTLNDVLSKVG 233
KPK+EK+SLK LTGKLF TI +LDHAAK+KSTPEAEKY+A T L DVL+K+G
Sbjct: 160 KPKEEKKSLKELTGKLFSTIDDLDHAAKMKSTPEAEKYFAATKDALGDVLAKLG 213
>sp|Q0D5P8|PSBQ_ORYSJ Oxygen-evolving enhancer protein 3, chloroplastic OS=Oryza sativa
subsp. japonica GN=Os07g0544800 PE=2 SV=1
Length = 217
Score = 214 bits (545), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 148/235 (62%), Positives = 174/235 (74%), Gaps = 20/235 (8%)
Query: 1 MAQAMASMAGLRGSSHSQAVLEGSFQL-SGPNRLNAPSNSRVAVARPGFTVRAQQASNEP 59
MAQAMASM GL SQ V QL +GP R A SR+AV R Q
Sbjct: 1 MAQAMASMTGL-----SQGV-----QLPAGPRR--AGGRSRLAVVRADAAAADVQ----- 43
Query: 60 ETSRRAMLGLVAAGVASGSFVQAVLADAT-PIKVGPPPPPSGGLPGTLNSDEPRDLDLPL 118
T RRA+LGLVA G+A G+ QA LA+A PIK+GPPPPPSGGLPGTLNSD+ RD DLPL
Sbjct: 44 -TGRRAVLGLVATGIAGGALAQAALAEAAKPIKLGPPPPPSGGLPGTLNSDQARDTDLPL 102
Query: 119 KERFFIQPLSPAQAAERAKASAKDILNVKELIDKKAWPYVQNDLRLRASYLRYDLNTIIS 178
+ERF++QPL PA+AA RAK SA+DI+N+K LI+KK WP+V++DLRLRASYLRYDL T+I+
Sbjct: 103 RERFYLQPLPPAEAAARAKESAQDIINLKPLIEKKQWPFVRDDLRLRASYLRYDLKTVIN 162
Query: 179 AKPKDEKQSLKNLTGKLFQTIGNLDHAAKIKSTPEAEKYYAETVSTLNDVLSKVG 233
+KPKDEK+ LK+LTGKLF TI LDHAAKIKS EAEKYY T S L DVL+K+G
Sbjct: 163 SKPKDEKKGLKDLTGKLFATIDGLDHAAKIKSPEEAEKYYTLTKSALGDVLAKLG 217
>sp|P83646|PSBQ_ORYSI Oxygen-evolving enhancer protein 3, chloroplastic OS=Oryza sativa
subsp. indica GN=OsI_025465 PE=1 SV=2
Length = 217
Score = 214 bits (545), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 148/235 (62%), Positives = 174/235 (74%), Gaps = 20/235 (8%)
Query: 1 MAQAMASMAGLRGSSHSQAVLEGSFQL-SGPNRLNAPSNSRVAVARPGFTVRAQQASNEP 59
MAQAMASM GL SQ V QL +GP R A SR+AV R Q
Sbjct: 1 MAQAMASMTGL-----SQGV-----QLPAGPRR--AGGRSRLAVVRADAAAADVQ----- 43
Query: 60 ETSRRAMLGLVAAGVASGSFVQAVLADAT-PIKVGPPPPPSGGLPGTLNSDEPRDLDLPL 118
T RRA+LGLVA G+A G+ QA LA+A PIK+GPPPPPSGGLPGTLNSD+ RD DLPL
Sbjct: 44 -TGRRAVLGLVATGIAGGALAQAALAEAAKPIKLGPPPPPSGGLPGTLNSDQARDTDLPL 102
Query: 119 KERFFIQPLSPAQAAERAKASAKDILNVKELIDKKAWPYVQNDLRLRASYLRYDLNTIIS 178
+ERF++QPL PA+AA RAK SA+DI+N+K LI+KK WP+V++DLRLRASYLRYDL T+I+
Sbjct: 103 RERFYLQPLPPAEAAARAKESAQDIINLKPLIEKKQWPFVRDDLRLRASYLRYDLKTVIN 162
Query: 179 AKPKDEKQSLKNLTGKLFQTIGNLDHAAKIKSTPEAEKYYAETVSTLNDVLSKVG 233
+KPKDEK+ LK+LTGKLF TI LDHAAKIKS EAEKYY T S L DVL+K+G
Sbjct: 163 SKPKDEKKGLKDLTGKLFATIDGLDHAAKIKSPEEAEKYYTLTKSALGDVLAKLG 217
>sp|Q9SGH4|PQL2_ARATH PsbQ-like protein 2, chloroplastic OS=Arabidopsis thaliana GN=PQL2
PE=1 SV=1
Length = 220
Score = 73.6 bits (179), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 55/201 (27%), Positives = 95/201 (47%), Gaps = 11/201 (5%)
Query: 39 SRVAVARPGFTVRAQQASNEPET---SRRAMLGLVAAGVASGSFVQ--AVLADATPIKVG 93
SR GF R + EP++ +RR LG + +G + LA +
Sbjct: 23 SRKTGKSSGFACRRTEEFQEPDSVQITRRMTLGFAVSIGLTGILGENNVSLAQDNGFWID 82
Query: 94 PPPPPSGGLPGTLNS--DEPRDLDLPLKERFFIQPLSPAQAAERAKASAKDILNVKELID 151
P P +P N+ +E +K+ ++ + R K +A D+L +++LI
Sbjct: 83 GPLP----IPPIYNNIVNEKTGTRTFIKKGVYVADIGTKGRMYRVKKNAFDLLAMEDLIG 138
Query: 152 KKAWPYVQNDLRLRASYLRYDLNTIISAKPKDEKQSLKNLTGKLFQTIGNLDHAAKIKST 211
YV+ LRL++++L YD + +ISA ++KQ L +L +LF L+ AAK K+
Sbjct: 139 PDTLNYVKKYLRLKSTFLFYDFDNLISAAASEDKQPLTDLANRLFDNFEKLEDAAKTKNL 198
Query: 212 PEAEKYYAETVSTLNDVLSKV 232
E E Y +T L +V++++
Sbjct: 199 AETESCYKDTKFLLQEVMTRM 219
>sp|Q9XI73|PQL1_ARATH PsbQ-like protein 1, chloroplastic OS=Arabidopsis thaliana GN=PQL1
PE=1 SV=1
Length = 190
Score = 65.9 bits (159), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 31/112 (27%), Positives = 63/112 (56%)
Query: 118 LKERFFIQPLSPAQAAERAKASAKDILNVKELIDKKAWPYVQNDLRLRASYLRYDLNTII 177
+KE++F+ LSP AA R K +A+ + +++E++D +W YV +RL+ +YL DL +
Sbjct: 75 IKEKYFMPGLSPEDAAARIKQTAEGLRDMREMLDHMSWRYVIFYIRLKQAYLSQDLTNAM 134
Query: 178 SAKPKDEKQSLKNLTGKLFQTIGNLDHAAKIKSTPEAEKYYAETVSTLNDVL 229
+ P+ + +L + + LD + E+ YY +T+ ++++V+
Sbjct: 135 NILPESRRNDYVQAANELVENMSELDFYVRTPKVYESYLYYEKTLKSIDNVV 186
>sp|Q2V4B2|PQL3_ARATH PsbQ-like protein 3, chloroplastic OS=Arabidopsis thaliana GN=PQL3
PE=2 SV=1
Length = 187
Score = 58.5 bits (140), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 32/102 (31%), Positives = 57/102 (55%), Gaps = 1/102 (0%)
Query: 132 AAERAKASAKDILNVKE-LIDKKAWPYVQNDLRLRASYLRYDLNTIISAKPKDEKQSLKN 190
A E + +A++I +KE +I+KK W +LR AS ++ D II AKP ++ ++
Sbjct: 86 AQEGLRKNAENIKRIKEIMIEKKLWKEGGKELRRSASNMKQDFYLIIQAKPPKDRPLFRS 145
Query: 191 LTGKLFQTIGNLDHAAKIKSTPEAEKYYAETVSTLNDVLSKV 232
L LF +I +D+AA+ + +YY V+ L+D+ ++
Sbjct: 146 LYSSLFNSITKMDYAARDGDETKVLEYYINIVAILDDIFPRI 187
>sp|P12852|PSBQ_CHLRE Oxygen-evolving enhancer protein 3, chloroplastic OS=Chlamydomonas
reinhardtii GN=PSBQ PE=2 SV=1
Length = 199
Score = 57.4 bits (137), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 42/126 (33%), Positives = 62/126 (49%), Gaps = 3/126 (2%)
Query: 110 EPRDLDLP--LKERFFIQPLSPAQAAERAKASAKDI-LNVKELIDKKAWPYVQNDLRLRA 166
E RDLDLP ++E F S + +R K S I ++ I K W + LR +
Sbjct: 73 EARDLDLPQNVREGFTQARASLDETKKRVKESEARIDADLDVFIQKSYWTEAREQLRRQV 132
Query: 167 SYLRYDLNTIISAKPKDEKQSLKNLTGKLFQTIGNLDHAAKIKSTPEAEKYYAETVSTLN 226
LR+DLNT+ S K K+ K++ L + Q + +LD A + K A K T + L+
Sbjct: 133 GTLRFDLNTLASTKEKEAKKAALGLRKEFIQAVEDLDFALREKDQASAAKKLEITKAKLD 192
Query: 227 DVLSKV 232
VL+ V
Sbjct: 193 SVLAAV 198
>sp|P19589|PSBQ_PEA Oxygen-evolving enhancer protein 3 (Fragment) OS=Pisum sativum
GN=PSBQ PE=1 SV=1
Length = 32
Score = 47.8 bits (112), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 25/32 (78%), Positives = 26/32 (81%)
Query: 86 DATPIKVGPPPPPSGGLPGTLNSDEPRDLDLP 117
+A PIKVG PPP S GLPGTLNSDE RDL LP
Sbjct: 1 EAIPIKVGGPPPLSXGLPGTLNSDEARDLKLP 32
>sp|Q41643|PSBQ_VOLCA Oxygen-evolving enhancer protein 3, chloroplastic OS=Volvox carteri
GN=PSBQ PE=2 SV=1
Length = 202
Score = 42.7 bits (99), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 66/204 (32%), Positives = 91/204 (44%), Gaps = 21/204 (10%)
Query: 39 SRVAVA-RPGFTVRAQQASNEPETSRRAMLG-LVAAGVASGSFVQAVLADATPIKV-GPP 95
SR AVA R G V +AS E SRRA+LG L+A+ V + + A ATP+ +
Sbjct: 9 SRPAVASRRGVVV--VRASVE---SRRAVLGGLLASTVVALTSANKAQAAATPVDLFDDR 63
Query: 96 PPPSGGLPGTLNSDEPRDLDLPLKERFFIQPLSPAQAA-----ERAKASAKDI-LNVKEL 149
G E RDLDL R L A+ + +R K S I +++
Sbjct: 64 KVRETGFDLIY---EARDLDLRQSAR---DGLDQARGSIDATIKRVKESETRIDADLEGF 117
Query: 150 IDKKAWPYVQNDLRLRASYLRYDLNTIISAKPKDEKQSLKNLTGKLF-QTIGNLDHAAKI 208
I K W + LR + LR+DLNT+ SAK ++ K F Q + +LD A +
Sbjct: 118 IKKNYWTEAREQLRRQVGTLRFDLNTLASAKGVKAEKKKALELKKEFIQKVEDLDFALRE 177
Query: 209 KSTPEAEKYYAETVSTLNDVLSKV 232
K A K S L+ VL+ V
Sbjct: 178 KDETSALKKLEAAKSALDSVLAYV 201
>sp|Q8EUV6|MNME_MYCPE tRNA modification GTPase MnmE OS=Mycoplasma penetrans (strain HF-2)
GN=mnmE PE=3 SV=1
Length = 444
Score = 33.1 bits (74), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 43/92 (46%), Gaps = 8/92 (8%)
Query: 104 GTLNSDEPRDLDLPLKERFFIQPLSPA----QAAERAKASAKDI-LNVKELIDKKAWPYV 158
G +NS+ LD+ K + I + + + + +AK+ L VKE+IDK
Sbjct: 145 GIINSNNDFFLDIKEKIFYLIGKIEVNIDYPEYEDVEQVTAKEFNLEVKEIIDK--LNKT 202
Query: 159 QNDLRLRASYLRYDLNTIISAKPKDEKQSLKN 190
ND + SYL LN +I KP K SL N
Sbjct: 203 INDFN-KVSYLYNGLNVVIVGKPNVGKSSLLN 233
>sp|P62134|RAD50_METMP DNA double-strand break repair Rad50 ATPase OS=Methanococcus
maripaludis (strain S2 / LL) GN=rad50 PE=3 SV=1
Length = 993
Score = 32.0 bits (71), Expect = 4.2, Method: Composition-based stats.
Identities = 23/68 (33%), Positives = 37/68 (54%), Gaps = 13/68 (19%)
Query: 170 RYDLNTII----SAKPKDEKQSLKNLTGKLFQTIGNLDHAAKIKSTPEAEKYYAETVSTL 225
+ +L+ II S+K ++EK+SL+NL +L TI NL+ +K E +
Sbjct: 635 KLELSKIIGDYDSSKIENEKKSLENLKDELKNTIYNLEREINLKK---------ELKNIQ 685
Query: 226 NDVLSKVG 233
ND+ SK+G
Sbjct: 686 NDISSKIG 693
>sp|Q9ZCA7|Y853_RICPR Uncharacterized protein RP853 OS=Rickettsia prowazekii (strain
Madrid E) GN=RP853 PE=4 SV=1
Length = 322
Score = 30.4 bits (67), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 23/41 (56%), Gaps = 3/41 (7%)
Query: 188 LKNLTGKLFQTIGNL---DHAAKIKSTPEAEKYYAETVSTL 225
+ NLT TI N+ D+ ++ S PEAEKY + V+ L
Sbjct: 24 VNNLTKSTCSTIANMLAIDYTLRLNSKPEAEKYIKKCVTRL 64
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.312 0.128 0.355
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 82,744,546
Number of Sequences: 539616
Number of extensions: 3484566
Number of successful extensions: 11425
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 34
Number of HSP's that attempted gapping in prelim test: 11349
Number of HSP's gapped (non-prelim): 77
length of query: 233
length of database: 191,569,459
effective HSP length: 114
effective length of query: 119
effective length of database: 130,053,235
effective search space: 15476334965
effective search space used: 15476334965
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 59 (27.3 bits)