Query 026780
Match_columns 233
No_of_seqs 92 out of 105
Neff 4.3
Searched_HMMs 29240
Date Mon Mar 25 21:59:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026780.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/026780hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1vyk_A Oxygen-evolving enhance 100.0 1.6E-58 5.4E-63 384.9 16.1 148 86-233 1-149 (149)
2 3zsu_A TLL2057 protein, cyanoq 99.9 2.7E-24 9.1E-29 175.6 13.4 104 129-232 23-126 (130)
3 3ls0_A SLL1638 protein, PSBQ; 99.9 5.7E-24 2E-28 174.2 14.5 103 130-232 26-129 (133)
4 3rfy_A Peptidyl-prolyl CIS-tra 96.1 0.0071 2.4E-07 56.4 5.9 96 135-230 49-147 (369)
5 3us6_A Histidine-containing ph 80.9 15 0.00051 29.4 10.0 77 137-231 51-129 (153)
6 3r6n_A Desmoplakin; spectrin r 73.4 23 0.00078 33.3 10.4 112 113-232 323-449 (450)
7 1yvi_A Histidine-containing ph 67.4 43 0.0015 26.2 10.1 77 137-231 52-130 (149)
8 1sr2_A Putative sensor-like hi 51.5 68 0.0023 24.3 7.7 75 135-227 40-114 (116)
9 2js5_A Uncharacterized protein 50.2 23 0.0008 25.8 4.5 45 161-206 14-58 (71)
10 2w6b_A RHO guanine nucleotide 50.1 15 0.00051 25.7 3.3 51 149-199 2-54 (56)
11 4b9q_A Chaperone protein DNAK; 47.8 1.7E+02 0.0059 27.8 11.5 92 126-231 506-601 (605)
12 3csx_A Putative uncharacterize 47.8 26 0.0009 26.1 4.6 44 162-206 27-70 (81)
13 2wsc_N PSAN, PSI-N, photosyste 44.0 12 0.00043 31.0 2.5 28 48-75 42-73 (170)
14 1q90_R Cytochrome B6-F complex 43.9 11 0.00037 25.6 1.8 18 58-75 6-23 (49)
15 3fyq_A CG6831-PA (talin); 5-he 41.1 1.6E+02 0.0055 25.2 9.1 73 153-226 40-118 (199)
16 1yke_B RNA polymerase II holoe 41.1 84 0.0029 25.5 7.0 56 126-204 49-110 (151)
17 1ykh_B RNA polymerase II holoe 40.5 1E+02 0.0035 24.2 7.4 35 126-183 49-83 (132)
18 2j8w_A Cytochrome C'; heme, ir 37.4 1.3E+02 0.0046 22.8 9.2 83 137-224 17-118 (129)
19 2ykz_A Cytochrome C'; electron 35.5 92 0.0031 23.7 6.2 46 179-224 68-115 (127)
20 2a0b_A HPT domain; sensory tra 33.5 1.4E+02 0.0049 22.0 9.0 27 137-163 38-64 (125)
21 3bpv_A Transcriptional regulat 32.2 72 0.0025 22.9 4.9 31 173-203 108-138 (138)
22 1cpq_A Cytochrome C'; electron 31.3 1.2E+02 0.0041 23.2 6.2 46 179-224 70-117 (129)
23 2kho_A Heat shock protein 70; 30.9 2.4E+02 0.0083 26.8 9.5 97 125-231 505-601 (605)
24 4ani_A Protein GRPE; chaperone 30.9 2.5E+02 0.0086 23.9 10.7 50 184-233 104-157 (213)
25 2p06_A Hypothetical protein AF 30.1 38 0.0013 26.0 3.0 30 140-169 66-95 (114)
26 3us6_A Histidine-containing ph 28.8 2.1E+02 0.0073 22.5 9.0 18 212-229 117-134 (153)
27 2ck3_A ATP synthase subunit al 28.3 1.5E+02 0.0052 28.5 7.6 67 126-198 435-507 (510)
28 3iqt_A Signal transduction his 28.3 1.3E+02 0.0043 23.0 5.9 29 136-164 39-67 (123)
29 3myf_A Sensor protein; HPT, hi 26.9 2E+02 0.0069 21.6 9.5 29 136-164 30-58 (119)
30 1naf_A ADP-ribosylation factor 26.2 1.2E+02 0.004 24.8 5.6 26 173-203 22-48 (158)
31 3vr4_A V-type sodium ATPase ca 25.8 1.9E+02 0.0065 28.6 7.9 79 119-202 504-591 (600)
32 2c5k_T Syntaxin TLG1, T-snare 25.3 2.1E+02 0.0072 21.2 7.5 54 155-208 8-61 (95)
33 3o10_A Sacsin; all-helical dom 25.2 2.4E+02 0.0082 21.8 11.9 103 128-230 5-135 (141)
34 2rpa_A Katanin P60 ATPase-cont 25.1 1.4E+02 0.0049 21.6 5.3 38 195-232 12-49 (78)
35 3s2w_A Transcriptional regulat 24.8 1.8E+02 0.0062 21.6 6.2 34 169-202 125-158 (159)
36 1dkg_A Nucleotide exchange fac 24.6 2.9E+02 0.0098 23.0 7.9 69 160-233 61-138 (197)
37 2j8p_A Cleavage stimulation fa 23.5 43 0.0015 22.7 2.0 23 176-198 23-45 (49)
38 3u61_B DNA polymerase accessor 23.4 2.7E+02 0.0093 23.1 7.6 106 116-223 151-264 (324)
39 3r8n_T 30S ribosomal protein S 23.3 1.7E+02 0.0058 21.6 5.5 30 201-230 32-61 (85)
40 2r9v_A ATP synthase subunit al 23.3 1.9E+02 0.0065 27.9 7.3 66 126-197 440-511 (515)
41 3r84_A Mediator of RNA polymer 23.1 1.3E+02 0.0044 22.5 4.8 27 181-207 38-64 (86)
42 3bj6_A Transcriptional regulat 22.9 2.2E+02 0.0076 20.6 6.6 32 173-204 119-150 (152)
43 3a6m_A Protein GRPE, HSP-70 co 22.9 2.4E+02 0.008 23.2 6.9 72 159-233 40-115 (177)
44 2a0b_A HPT domain; sensory tra 22.7 2.3E+02 0.0079 20.8 6.5 39 193-231 76-121 (125)
45 3deu_A Transcriptional regulat 22.7 1.5E+02 0.0051 22.6 5.4 36 168-203 128-163 (166)
46 3vrc_A Cytochrome C'; C-type c 22.1 2.1E+02 0.007 22.1 6.1 42 183-224 79-120 (131)
47 1vh6_A Flagellar protein FLIS; 21.8 3E+02 0.01 21.8 7.3 55 174-231 15-69 (145)
48 2p32_A Heat shock 70 kDa prote 21.8 2.5E+02 0.0086 20.9 8.2 21 180-200 43-63 (120)
49 3mab_A Uncharacterized protein 21.5 1.5E+02 0.0052 22.0 5.0 15 179-193 69-83 (93)
50 3nrv_A Putative transcriptiona 20.6 1.8E+02 0.0061 21.1 5.3 30 173-202 119-148 (148)
51 3hug_A RNA polymerase sigma fa 20.4 2.2E+02 0.0075 19.7 7.3 61 169-232 27-88 (92)
52 1hx1_B BAG-1, BAG-family molec 20.4 3.2E+02 0.011 21.5 7.9 62 167-231 40-101 (114)
No 1
>1vyk_A Oxygen-evolving enhancer protein 3; photosystem II, oxygen-enhancer evolving complex, water oxidizing complex, PSBQ, OEE3, photosynthesis; 1.49A {Spinacia oleracea} PDB: 1nze_A
Probab=100.00 E-value=1.6e-58 Score=384.85 Aligned_cols=148 Identities=71% Similarity=1.123 Sum_probs=126.1
Q ss_pred ccCCcccCCCCCCCCCCCCCCCCCCCCCCCccc-ccccccCCCCHHHHHHHHHHHHHHHHHHHHHhhhCChhHHHHHHhh
Q 026780 86 DATPIKVGPPPPPSGGLPGTLNSDEPRDLDLPL-KERFFIQPLSPAQAAERAKASAKDILNVKELIDKKAWPYVQNDLRL 164 (233)
Q Consensus 86 ~~~~i~~~p~P~ps~~~~Gt~~~~eardl~l~l-k~rf~~q~ls~~ea~~RIkesA~~L~~lk~lIdkksW~~vr~~LRl 164 (233)
|+.+||++||||||||+|||+||||||||+||+ |||||+|++||+||++||++++++|.+|++||++++|+|||||||+
T Consensus 1 ~~~~~~~~~~~~~~~~~~g~~~~~~ard~~l~~~k~~f~~~~l~~~~a~~rIk~~a~~i~~vk~lI~k~~W~~vrn~LR~ 80 (149)
T 1vyk_A 1 EARPIVVGPPPPLSGGLPGTENSDQARDGTLPYTKDRFYLQPLPPTEAAQRAKVSASEILNVKQFIDRKAWPSLQNDLRL 80 (149)
T ss_dssp CCSCEECCCCCCC--------------------CTTCCEECCCCHHHHHHHHHHHHHHHHTTHHHHHTTCHHHHHHHHHH
T ss_pred CCCCCcCCCCCCCCCCCCCcccchhhhccCccccccccccCCCCHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHH
Confidence 458999999999999999999999999999999 9999999999999999999999999999999999999999999999
Q ss_pred hhhhHHHHHHHHHhcCChhhHHHHHHHHHHHHHhhhhhHHHHhcCChHHHHHHHHHHHHHHHHHHhhhC
Q 026780 165 RASYLRYDLNTIISAKPKDEKQSLKNLTGKLFQTIGNLDHAAKIKSTPEAEKYYAETVSTLNDVLSKVG 233 (233)
Q Consensus 165 ka~~Lr~DL~tlisskPkd~Kk~l~~La~kLF~~le~LD~AaR~Kn~~~a~~~Y~~tv~~LdevLa~l~ 233 (233)
|++|||+||++||++||+++|+++++||++||++|++||+|||+||.+++++||++|+++||+||++||
T Consensus 81 ~~~~Lr~Dl~~li~slp~~~kk~l~~La~~Lf~~le~LD~AAr~kd~~~a~~~Y~~t~~~ld~vl~~l~ 149 (149)
T 1vyk_A 81 RASYLRYDLKTVISAKPKDEKKSLQELTSKLFSSIDNLDHAAKIKSPTEAEKYYGQTVSNINEVLAKLG 149 (149)
T ss_dssp HHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred hHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHhC
Confidence 999999999999999999999999999999999999999999999999999999999999999999997
No 2
>3zsu_A TLL2057 protein, cyanoq; photosystem II assembly, photosynthesis, extrinsic protein; 1.60A {Thermosynechococcus elongatus}
Probab=99.91 E-value=2.7e-24 Score=175.55 Aligned_cols=104 Identities=14% Similarity=0.199 Sum_probs=98.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhCChhHHHHHHhhhhhhHHHHHHHHHhcCChhhHHHHHHHHHHHHHhhhhhHHHHhc
Q 026780 129 PAQAAERAKASAKDILNVKELIDKKAWPYVQNDLRLRASYLRYDLNTIISAKPKDEKQSLKNLTGKLFQTIGNLDHAAKI 208 (233)
Q Consensus 129 ~~ea~~RIkesA~~L~~lk~lIdkksW~~vr~~LRlka~~Lr~DL~tlisskPkd~Kk~l~~La~kLF~~le~LD~AaR~ 208 (233)
...++.+|.+++++|.+|+.||++++|.++||+||++.|.||+||++|..+|++.+||++++|+++||++|++||+|++.
T Consensus 23 iq~y~~~i~~~r~Rl~eL~~lI~~~~W~~~Rn~IhGPlg~lr~~m~~l~~~Llp~dqk~A~~lak~l~~~L~~LD~AA~~ 102 (130)
T 3zsu_A 23 IQDYLRDIEKNAERFADLEVSVAKGDWQEARNIMRGPLGEMLMDMRALNRNLLAKDQPTPTALTRALTDDFLKIDQGADL 102 (130)
T ss_dssp HHHHHHHHHHHHTTHHHHHHHHHTTCHHHHHHHHHTHHHHHHHHHHHHHHTSCGGGSHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHhchHHHHHHHHHHHHHhcCHhhHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34589999999999999999999999999999999999999999999999996556699999999999999999999999
Q ss_pred CChHHHHHHHHHHHHHHHHHHhhh
Q 026780 209 KSTPEAEKYYAETVSTLNDVLSKV 232 (233)
Q Consensus 209 Kn~~~a~~~Y~~tv~~LdevLa~l 232 (233)
||...+.++|++++++||.|++.|
T Consensus 103 ~n~~~a~k~Y~~a~adfdafl~li 126 (130)
T 3zsu_A 103 DSVTVAQEGFREAEADFKAYLNSL 126 (130)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred cCHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999865
No 3
>3ls0_A SLL1638 protein, PSBQ; photosynthesis, four helix bundle; 1.80A {Synechocystis SP} PDB: 3ls1_A
Probab=99.91 E-value=5.7e-24 Score=174.15 Aligned_cols=103 Identities=19% Similarity=0.287 Sum_probs=97.7
Q ss_pred HHHHHHHHHHHHHHHH-HHHHhhhCChhHHHHHHhhhhhhHHHHHHHHHhcCChhhHHHHHHHHHHHHHhhhhhHHHHhc
Q 026780 130 AQAAERAKASAKDILN-VKELIDKKAWPYVQNDLRLRASYLRYDLNTIISAKPKDEKQSLKNLTGKLFQTIGNLDHAAKI 208 (233)
Q Consensus 130 ~ea~~RIkesA~~L~~-lk~lIdkksW~~vr~~LRlka~~Lr~DL~tlisskPkd~Kk~l~~La~kLF~~le~LD~AaR~ 208 (233)
..++.+|.+++++|.+ |+.||++++|.++||+||++.|.||+||++|..++++.++|++++|+++||++|++||+|++.
T Consensus 26 q~y~~~i~~ar~Rl~e~L~~lI~~~~W~~~Rn~IhGPlg~lr~~m~~l~~~Llp~dqk~A~~lak~l~~~L~~LD~AA~~ 105 (133)
T 3ls0_A 26 QVYVNPIAVARDGMEKRLQGLIADQNWVDTQTYIHGPLGQLRRDMLGLASSLLPKDQDKAKTLAKEVFGHLERLDAAAKD 105 (133)
T ss_dssp HHHHHHHHHHHHHHHHTHHHHHHTTCHHHHHHHHHTTTTTHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhHHHHHHHhhhcchHHHHHHHhchHHHHHHHHHHHHHhcChhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence 4589999999999999 999999999999999999999999999999999995555589999999999999999999999
Q ss_pred CChHHHHHHHHHHHHHHHHHHhhh
Q 026780 209 KSTPEAEKYYAETVSTLNDVLSKV 232 (233)
Q Consensus 209 Kn~~~a~~~Y~~tv~~LdevLa~l 232 (233)
||...+.++|++++++||.|++.|
T Consensus 106 ~n~~~a~k~Y~~a~adfdafl~li 129 (133)
T 3ls0_A 106 RNGSQAKIQYQEALADFDSFLNLL 129 (133)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred cCHHHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999999999865
No 4
>3rfy_A Peptidyl-prolyl CIS-trans isomerase CYP38, chloro; cyclophilin, peptidyl prolyl isomerase, ppiase, TLP,; 2.39A {Arabidopsis thaliana}
Probab=96.10 E-value=0.0071 Score=56.41 Aligned_cols=96 Identities=11% Similarity=0.145 Sum_probs=87.4
Q ss_pred HHHHHHHHHHHHHHHhhh---CChhHHHHHHhhhhhhHHHHHHHHHhcCChhhHHHHHHHHHHHHHhhhhhHHHHhcCCh
Q 026780 135 RAKASAKDILNVKELIDK---KAWPYVQNDLRLRASYLRYDLNTIISAKPKDEKQSLKNLTGKLFQTIGNLDHAAKIKST 211 (233)
Q Consensus 135 RIkesA~~L~~lk~lIdk---ksW~~vr~~LRlka~~Lr~DL~tlisskPkd~Kk~l~~La~kLF~~le~LD~AaR~Kn~ 211 (233)
.|++-.+.|.++-++|.- |.|.-+.++++.-+.-|..+=+.|+++.|.++|.+...|.++|=..|++|..++..||.
T Consensus 49 ~~~~~q~~le~~~~~lr~~~~k~~~~~~~~~~~~~~~~~~~~~~il~~v~~~~~~~~~~~~~~l~~~l~~l~~~~~~~d~ 128 (369)
T 3rfy_A 49 AIREVQKPLEDITDSLKIAGVKALDSVERNVRQASRTLQQGKSIIVAGFAESKKDHGNEMIEKLEAGMQDMLKIVEDRKR 128 (369)
T ss_dssp HHHHHHHHHHTHHHHTTSCSTTTHHHHHHHHHHHHHHHSCHHHHHTTTCCGGGHHHHHHHHHHHHHHHHHHHCCCSSCCC
T ss_pred hHHHHHHHHHHHHHHhccccCCCchHHHHHHHHHHHHHhhCHHHHHhhcChhhHHHHHHHHHHHHHHHHHHHHHHhccCH
Confidence 467777788888888876 99999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q 026780 212 PEAEKYYAETVSTLNDVLS 230 (233)
Q Consensus 212 ~~a~~~Y~~tv~~LdevLa 230 (233)
..+....++++..+.++-.
T Consensus 129 ~~~~~~~~~~l~~v~~le~ 147 (369)
T 3rfy_A 129 DAVAPKQKEILKYVGGIEE 147 (369)
T ss_dssp SSSGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 9999999998888877643
No 5
>3us6_A Histidine-containing phosphotransfer protein type MTHPT1; helix bundle, plant hormone signal transduction, cytokinin S transduction; 1.45A {Medicago truncatula}
Probab=80.85 E-value=15 Score=29.42 Aligned_cols=77 Identities=6% Similarity=0.066 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHHHhhhC--ChhHHHHHHhhhhhhHHHHHHHHHhcCChhhHHHHHHHHHHHHHhhhhhHHHHhcCChHHH
Q 026780 137 KASAKDILNVKELIDKK--AWPYVQNDLRLRASYLRYDLNTIISAKPKDEKQSLKNLTGKLFQTIGNLDHAAKIKSTPEA 214 (233)
Q Consensus 137 kesA~~L~~lk~lIdkk--sW~~vr~~LRlka~~Lr~DL~tlisskPkd~Kk~l~~La~kLF~~le~LD~AaR~Kn~~~a 214 (233)
.++.+.|..|+..++.. .|..+....|. |+...+++. +.+|.+-..+|..++|.++...+
T Consensus 51 ~d~~~~l~~L~~al~~~~~D~~~l~~~aH~--------LKGss~~lG----------a~~l~~~c~~lE~~~~~~~~~~~ 112 (153)
T 3us6_A 51 DDSERILKDLSFAVDQQSIDFKKVDAHVHQ--------FKGSSASIG----------AQRVKNSCVAFRNFCEEQNIDAC 112 (153)
T ss_dssp HHHHHHHHHHHHHHTSSSCCHHHHHHHHHH--------HHHHHHHHT----------CHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHHHHHcCCccHHHHHHHHHH--------HHHHHHHhc----------HHHHHHHHHHHHHHHHcCCHHHH
Confidence 34444555666666555 56655444432 222333332 25566777788889999998887
Q ss_pred HHHHHHHHHHHHHHHhh
Q 026780 215 EKYYAETVSTLNDVLSK 231 (233)
Q Consensus 215 ~~~Y~~tv~~LdevLa~ 231 (233)
..++.+....+..+...
T Consensus 113 ~~~l~~l~~e~~~v~~~ 129 (153)
T 3us6_A 113 RRCLQQVKQEYLLVKNK 129 (153)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 77777777777766554
No 6
>3r6n_A Desmoplakin; spectrin repeat, SH3 domain, cell adhesion, desmosome; 2.95A {Homo sapiens}
Probab=73.42 E-value=23 Score=33.35 Aligned_cols=112 Identities=13% Similarity=0.250 Sum_probs=60.3
Q ss_pred CCCcccccc-cccCCCCHHHHHHHHHHHHHHHHHHHHHhhhCChhHHHHHHhhhh----hhHHHHHHHH-------HhcC
Q 026780 113 DLDLPLKER-FFIQPLSPAQAAERAKASAKDILNVKELIDKKAWPYVQNDLRLRA----SYLRYDLNTI-------ISAK 180 (233)
Q Consensus 113 dl~l~lk~r-f~~q~ls~~ea~~RIkesA~~L~~lk~lIdkksW~~vr~~LRlka----~~Lr~DL~tl-------issk 180 (233)
|...+++.= |.++|-.|+ |++++..-...+..|..+ |. +.|++.|+ -|+..|+..| +.++
T Consensus 323 G~~~~vPavcf~ipppd~e-ai~~a~~l~~~~~~~~~l-----w~--~~~~~~~~~~~~~~~~~d~~~i~~w~~~~~~~~ 394 (450)
T 3r6n_A 323 GVDMLVPSVGLIIPPPNPL-AVDLSCKIEQYYEAILAL-----WN--QLYINMKSLVSWHYCMIDIEKIRAMTIAKLKTM 394 (450)
T ss_dssp SCCEEEEGGGEECCSCCHH-HHHHHHHHHHHHHHHHHH-----HH--HHHHHHHHHHHHHHHHHHHHHHHTCCHHHHTTS
T ss_pred CCeeccceeEEecCCCCHH-HHHHHHHHHHHHHHHHHH-----HH--HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhc
Confidence 344566544 455555554 555444433333333332 21 22333333 4444444444 4455
Q ss_pred -ChhhHHHHHHHHHHHHHhhhhhHHHH--hcCChHHHHHHHHHHHHHHHHHHhhh
Q 026780 181 -PKDEKQSLKNLTGKLFQTIGNLDHAA--KIKSTPEAEKYYAETVSTLNDVLSKV 232 (233)
Q Consensus 181 -Pkd~Kk~l~~La~kLF~~le~LD~Aa--R~Kn~~~a~~~Y~~tv~~LdevLa~l 232 (233)
|++.++-++.|-..|=+.+.+.+..- ...|--+.+.-|..+...+++++-.|
T Consensus 395 ~~~~~~~~~~~l~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 449 (450)
T 3r6n_A 395 RQEDYMKTIADLELHYQEFIRNSQGSEMFGDDDKRKIQSQFTDAQKHYQTLVIQL 449 (450)
T ss_dssp CTTTHHHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred CHHHHHHHHHHHHHHHHHHHHcCCccccCChHHHHHHHHHHHHHHHHHHHHHhhC
Confidence 88998989888777766666655432 11233456677777777777776543
No 7
>1yvi_A Histidine-containing phosphotransfer protein; structural genomics, protein structure initiative, PSI, CESG, AK104879, phosphorelay mediator, HP1; 2.00A {Oryza sativa} SCOP: a.24.10.2 PDB: 2q4f_A 1wn0_A
Probab=67.41 E-value=43 Score=26.21 Aligned_cols=77 Identities=14% Similarity=0.083 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHHHhhhC--ChhHHHHHHhhhhhhHHHHHHHHHhcCChhhHHHHHHHHHHHHHhhhhhHHHHhcCChHHH
Q 026780 137 KASAKDILNVKELIDKK--AWPYVQNDLRLRASYLRYDLNTIISAKPKDEKQSLKNLTGKLFQTIGNLDHAAKIKSTPEA 214 (233)
Q Consensus 137 kesA~~L~~lk~lIdkk--sW~~vr~~LRlka~~Lr~DL~tlisskPkd~Kk~l~~La~kLF~~le~LD~AaR~Kn~~~a 214 (233)
.++.+.|..|+..++.. .|..++...|. |+....++. +.+|.+-..+|..+++.++.+.+
T Consensus 52 ~d~~~~l~~L~~Al~~~~~D~~~l~~~aH~--------LKGssa~lG----------a~~l~~~c~~lE~~~~~~~~~~~ 113 (149)
T 1yvi_A 52 DDADRIINEIATLLEQPVVNFDKVDAYVHQ--------LKGSSASVG----------AQKVKFTCMQFRQFCQDKSRDGC 113 (149)
T ss_dssp HHHHHHHHHHHHHHTSSSCCHHHHHHHHHH--------HHHHHHHHT----------CHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHHHcCCccHHHHHHHHHH--------HHhHHHHHh----------HHHHHHHHHHHHHHHHcCCHHHH
Confidence 34444455666666654 56666555542 223333332 35667777788888999988877
Q ss_pred HHHHHHHHHHHHHHHhh
Q 026780 215 EKYYAETVSTLNDVLSK 231 (233)
Q Consensus 215 ~~~Y~~tv~~LdevLa~ 231 (233)
..++.+....++.+...
T Consensus 114 ~~~l~~l~~e~~~~~~~ 130 (149)
T 1yvi_A 114 LMALAVVRNDFYDLRNK 130 (149)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 77776666666665544
No 8
>1sr2_A Putative sensor-like histidine kinase YOJN; four-helical bundle, transferase; NMR {Escherichia coli} SCOP: a.24.10.4
Probab=51.49 E-value=68 Score=24.35 Aligned_cols=75 Identities=13% Similarity=0.110 Sum_probs=46.6
Q ss_pred HHHHHHHHHHHHHHHhhhCChhHHHHHHhhhhhhHHHHHHHHHhcCChhhHHHHHHHHHHHHHhhhhhHHHHhcCChHHH
Q 026780 135 RAKASAKDILNVKELIDKKAWPYVQNDLRLRASYLRYDLNTIISAKPKDEKQSLKNLTGKLFQTIGNLDHAAKIKSTPEA 214 (233)
Q Consensus 135 RIkesA~~L~~lk~lIdkksW~~vr~~LRlka~~Lr~DL~tlisskPkd~Kk~l~~La~kLF~~le~LD~AaR~Kn~~~a 214 (233)
=+....+++..++..++...|..+....|+=-| ....+.- ..|.+-...|..+++..+..+.
T Consensus 40 fl~s~~~Dl~~L~~A~~~~D~~~l~~~aHrLKG--------aa~~lG~----------~~L~~lc~~LE~~~~~~~~~~l 101 (116)
T 1sr2_A 40 FVDTVPDDVKRLYTEAATSDFAALAQTAHRLKG--------VFAMLNL----------VPGKQLCETLEHLIREKDVPGI 101 (116)
T ss_dssp HTTTHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--------HHHHHTC----------HHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHhHHHHHHHHHHHHcCCHHHHHHHHHHHHH--------HHHHcCH----------HHHHHHHHHHHHHHHcCCHHHH
Confidence 345566777888888888999988888775322 2222222 3344455566667888887777
Q ss_pred HHHHHHHHHHHHH
Q 026780 215 EKYYAETVSTLND 227 (233)
Q Consensus 215 ~~~Y~~tv~~Lde 227 (233)
..++.+....++.
T Consensus 102 ~~~i~~L~~~l~~ 114 (116)
T 1sr2_A 102 EKYISDIDSYVKS 114 (116)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 5555544444433
No 9
>2js5_A Uncharacterized protein; homodimer, protein structure, spectroscopy, structural genomics, PSI-2, protein structure initiative; NMR {Methylococcus capsulatus}
Probab=50.19 E-value=23 Score=25.81 Aligned_cols=45 Identities=20% Similarity=0.338 Sum_probs=39.7
Q ss_pred HHhhhhhhHHHHHHHHHhcCChhhHHHHHHHHHHHHHhhhhhHHHH
Q 026780 161 DLRLRASYLRYDLNTIISAKPKDEKQSLKNLTGKLFQTIGNLDHAA 206 (233)
Q Consensus 161 ~LRlka~~Lr~DL~tlisskPkd~Kk~l~~La~kLF~~le~LD~Aa 206 (233)
-|..+++.+.-||--|+..+|-+= +.+-++|.+.|+-+.+||.|=
T Consensus 14 KL~~~A~q~kmdLHDLaEdLP~~w-~~i~~vA~~tyda~~~l~~ak 58 (71)
T 2js5_A 14 KLNAQATALKMDLHDLAEDLPTGW-NRIMEVAEKTYEAYRQLDEFR 58 (71)
T ss_dssp HHHHHHHHHHHHHHHHHHSTTTSG-GGHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHhccchhhH-HHHHHHHHHHHHHHHHHHHHH
Confidence 367889999999999999999876 779999999999999998753
No 10
>2w6b_A RHO guanine nucleotide exchange factor 7; X-RAY crystallography, phosphoprotein, guanine-nucleotide releasing factor, GIT, PAK, PIX, COOL; 2.80A {Rattus norvegicus}
Probab=50.14 E-value=15 Score=25.74 Aligned_cols=51 Identities=16% Similarity=0.241 Sum_probs=38.6
Q ss_pred HhhhCChhHHHHHHhhhhhhHHHHHHHHHhcCChhh--HHHHHHHHHHHHHhh
Q 026780 149 LIDKKAWPYVQNDLRLRASYLRYDLNTIISAKPKDE--KQSLKNLTGKLFQTI 199 (233)
Q Consensus 149 lIdkksW~~vr~~LRlka~~Lr~DL~tlisskPkd~--Kk~l~~La~kLF~~l 199 (233)
.|+.++..++=-.||-....|++|.+.+-.++-+++ |+.|..+-.++..++
T Consensus 2 ~veEKSlVDtVYaLkDqV~eL~qe~k~m~k~lEeEqkARk~LE~~vrk~~k~~ 54 (56)
T 2w6b_A 2 PLGSKSLVDTVYALKDEVQELRQDNKKMKKSLEEEQRARKDLEKLVRKVLKNM 54 (56)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 367778888888999999999999999999996554 466767777776654
No 11
>4b9q_A Chaperone protein DNAK; HET: ATP; 2.40A {Escherichia coli} PDB: 2kho_A 1dkg_D
Probab=47.85 E-value=1.7e+02 Score=27.76 Aligned_cols=92 Identities=10% Similarity=0.072 Sum_probs=47.9
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHhhhCChhHHHHHHhhhhhhHHHHHHHHHh----cCChhhHHHHHHHHHHHHHhhhh
Q 026780 126 PLSPAQAAERAKASAKDILNVKELIDKKAWPYVQNDLRLRASYLRYDLNTIIS----AKPKDEKQSLKNLTGKLFQTIGN 201 (233)
Q Consensus 126 ~ls~~ea~~RIkesA~~L~~lk~lIdkksW~~vr~~LRlka~~Lr~DL~tlis----skPkd~Kk~l~~La~kLF~~le~ 201 (233)
.+|.+|-...++++.+--. +.-..+...+.+|.+. .+-|++.+.+. .+++++|+.+.+..+++-+-++.
T Consensus 506 ~ls~~ei~~~~~~~~~~~~---~d~~~~~~~~~~n~~e----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 578 (605)
T 4b9q_A 506 GLNEDEIQKMVRDAEANAE---ADRKCEELVQTRNQGD----HLLHSTRKQVEEAGDKLPADDKTAIESALTALETALKG 578 (605)
T ss_dssp SCCHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHH----HHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHHHHHHS
T ss_pred CCCHHHHHHHHHHhhhhHh---hHHHHHHHHHHHHHHH----HHHHHHHHHHHhhhhhCCHHHHHHHHHHHHHHHHHHhc
Confidence 6888887777766644211 1111122233444443 33344444443 45888988888877777766653
Q ss_pred hHHHHhcCChHHHHHHHHHHHHHHHHHHhh
Q 026780 202 LDHAAKIKSTPEAEKYYAETVSTLNDVLSK 231 (233)
Q Consensus 202 LD~AaR~Kn~~~a~~~Y~~tv~~LdevLa~ 231 (233)
.|..+-+..+++-...++.++++
T Consensus 579 -------~~~~~~~~~~~~l~~~~~~~~~~ 601 (605)
T 4b9q_A 579 -------EDKAAIEAKMQELAQVSQKLMEI 601 (605)
T ss_dssp -------SCHHHHHHHHHHHHHHTHHHHHH
T ss_pred -------CCHHHHHHHHHHHHHHHHHHHHH
Confidence 34444344444444444444443
No 12
>3csx_A Putative uncharacterized protein; metalloprotein, nitrogen fixation, cyanobacteria, circadian rhythms, metal binding protein, unknown function; 1.84A {Cyanothece}
Probab=47.82 E-value=26 Score=26.13 Aligned_cols=44 Identities=23% Similarity=0.403 Sum_probs=39.3
Q ss_pred HhhhhhhHHHHHHHHHhcCChhhHHHHHHHHHHHHHhhhhhHHHH
Q 026780 162 LRLRASYLRYDLNTIISAKPKDEKQSLKNLTGKLFQTIGNLDHAA 206 (233)
Q Consensus 162 LRlka~~Lr~DL~tlisskPkd~Kk~l~~La~kLF~~le~LD~Aa 206 (233)
|..+++.+.-||--|...+|-+- +.+-++|.+.|+-+.+||.+=
T Consensus 27 L~~~A~q~kmdLHDLaEdLP~~w-~~i~~vA~~tyda~~~l~~ak 70 (81)
T 3csx_A 27 LNSKAGQMKMDLHDLAEGLPTDY-ENLVETAEKTYEIFRELDQLK 70 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTTG-GGHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHccchhhH-HHHHHHHHHHHHHHHHHHHHH
Confidence 67889999999999999999876 779999999999999998753
No 13
>2wsc_N PSAN, PSI-N, photosystem I-N subunit; photosynthesis, electron transfer, membrane proteins, large complexes; HET: CL1 PQN BCR LMU LMG SUC UNL; 3.30A {Phaseolus vulgaris} PDB: 2wse_N* 2wsf_N*
Probab=43.96 E-value=12 Score=31.03 Aligned_cols=28 Identities=25% Similarity=0.302 Sum_probs=0.0
Q ss_pred eEEeeccccCC---cchhhHH-HHHHHHHHHh
Q 026780 48 FTVRAQQASNE---PETSRRA-MLGLVAAGVA 75 (233)
Q Consensus 48 ~~vra~~~~~~---~~~sRRa-~lgl~a~~l~ 75 (233)
-++|++|.... ....||+ +|||+++.++
T Consensus 42 p~~ka~~~~~~~~~~~~~rRaAl~~LaA~l~~ 73 (170)
T 2wsc_N 42 PLIKAHQAKVTESKSDQGRRSALVYLAATLFT 73 (170)
T ss_dssp --------------------------------
T ss_pred CcceeeeeecccccccchhHHHHHHHHHHHHH
Confidence 56777763211 1236775 6777765443
No 14
>1q90_R Cytochrome B6-F complex iron-sulfur subunit; membrane protein complex, photosynthesis, electron transfer, oxydoreductase, chlorophyll; HET: HEM CL1 BCR TDS SQD LFA LMG; 3.10A {Chlamydomonas reinhardtii} SCOP: f.23.12.1
Probab=43.89 E-value=11 Score=25.59 Aligned_cols=18 Identities=33% Similarity=0.658 Sum_probs=13.4
Q ss_pred CcchhhHHHHHHHHHHHh
Q 026780 58 EPETSRRAMLGLVAAGVA 75 (233)
Q Consensus 58 ~~~~sRRa~lgl~a~~l~ 75 (233)
.+.++||.+|.+++.+..
T Consensus 6 ~pdm~RRqfln~l~~G~~ 23 (49)
T 1q90_R 6 VPDMNKRNIMNLILAGGA 23 (49)
T ss_dssp CCCHHHHHHHHHHHHHHH
T ss_pred CCChHHHHHHHHHHHHHH
Confidence 356899999887775554
No 15
>3fyq_A CG6831-PA (talin); 5-helix bundle, cell adhesion; 1.95A {Drosophila melanogaster}
Probab=41.13 E-value=1.6e+02 Score=25.20 Aligned_cols=73 Identities=16% Similarity=0.227 Sum_probs=55.9
Q ss_pred CChhHHHHHHhhhhhhHHHHHHHHHhcCChhhHHHHHHHHHHHHHhhhhhHHHHhcC------ChHHHHHHHHHHHHHHH
Q 026780 153 KAWPYVQNDLRLRASYLRYDLNTIISAKPKDEKQSLKNLTGKLFQTIGNLDHAAKIK------STPEAEKYYAETVSTLN 226 (233)
Q Consensus 153 ksW~~vr~~LRlka~~Lr~DL~tlisskPkd~Kk~l~~La~kLF~~le~LD~AaR~K------n~~~a~~~Y~~tv~~Ld 226 (233)
.+..+.|..|-..+--|--|.+.|+++--+.| ..|-..+++....+++|=.++|.. +.|++|...=++.+++-
T Consensus 40 ~~F~~~qe~Ilk~Ak~Lvedtk~LV~~a~~tQ-e~LA~aa~~~v~~i~~La~~vK~gAAsl~s~dp~tQv~LLna~kdVa 118 (199)
T 3fyq_A 40 GSFADHREHILQTAKALVEDTKVLVTGAAGTQ-DQLANAAQNAVSTITQLAEAVKRGACSLGSTQPDSQVMVINAVKDVA 118 (199)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHTSSCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHcccCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHH
Confidence 56677788888888888889999998886666 578888999999999998888754 67777776655555443
No 16
>1yke_B RNA polymerase II holoenzyme component SRB7; gene regulation; 3.30A {Saccharomyces cerevisiae} SCOP: a.252.1.1
Probab=41.10 E-value=84 Score=25.46 Aligned_cols=56 Identities=16% Similarity=0.221 Sum_probs=35.8
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHhhhCChhHHHHHHhhhhhhHHHHHHHHHhcCChh------hHHHHHHHHHHHHHhh
Q 026780 126 PLSPAQAAERAKASAKDILNVKELIDKKAWPYVQNDLRLRASYLRYDLNTIISAKPKD------EKQSLKNLTGKLFQTI 199 (233)
Q Consensus 126 ~ls~~ea~~RIkesA~~L~~lk~lIdkksW~~vr~~LRlka~~Lr~DL~tlisskPkd------~Kk~l~~La~kLF~~l 199 (233)
+.++++....|++.+.+|.. =-+++..||+++|.. |-+.+.+|-+++=.-=
T Consensus 49 ~~~~~~f~~~~~ela~dli~-----------------------kakqIe~LIdsLPg~~~seeeQ~~ri~~Le~E~~~~~ 105 (151)
T 1yke_B 49 VVPPEEFSNTIDELSTDIIL-----------------------KTRQINKLIDSLPGVDVSAEEQLRKIDMLQKKLVEVE 105 (151)
T ss_dssp -CCHHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHCTTSSSCHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHHH
Confidence 35788899999999988874 135888999999853 3344444444443333
Q ss_pred hhhHH
Q 026780 200 GNLDH 204 (233)
Q Consensus 200 e~LD~ 204 (233)
++|..
T Consensus 106 ~el~~ 110 (151)
T 1yke_B 106 DEKIE 110 (151)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 33333
No 17
>1ykh_B RNA polymerase II holoenzyme component SRB7; gene regulation; 3.00A {Saccharomyces cerevisiae} SCOP: a.252.1.1
Probab=40.52 E-value=1e+02 Score=24.20 Aligned_cols=35 Identities=17% Similarity=0.286 Sum_probs=27.7
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHhhhCChhHHHHHHhhhhhhHHHHHHHHHhcCChh
Q 026780 126 PLSPAQAAERAKASAKDILNVKELIDKKAWPYVQNDLRLRASYLRYDLNTIISAKPKD 183 (233)
Q Consensus 126 ~ls~~ea~~RIkesA~~L~~lk~lIdkksW~~vr~~LRlka~~Lr~DL~tlisskPkd 183 (233)
+.++++....|++.+.+|.. =-+++..||+++|..
T Consensus 49 ~~~~~~f~~~~~ela~dli~-----------------------k~kqIe~LIdsLP~~ 83 (132)
T 1ykh_B 49 VVPPEEFSNTIDELSTDIIL-----------------------KTRQINKLIDSLPGV 83 (132)
T ss_dssp CCCHHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHSTTT
T ss_pred CCCHHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHhCCCC
Confidence 35788999999999988874 135888999999853
No 18
>2j8w_A Cytochrome C'; heme, iron, transport, metal-binding, electron transfer, electron transport; HET: HEM; 1.29A {Rubrivivax gelatinosus} SCOP: a.24.3.2 PDB: 1jaf_A* 2j9b_A*
Probab=37.38 E-value=1.3e+02 Score=22.78 Aligned_cols=83 Identities=19% Similarity=0.232 Sum_probs=55.9
Q ss_pred HHHHHHHHHHHHHhhhC---ChhHHHHHHhhhhhhHHHHHHHHH--------------hcCCh--hhHHHHHHHHHHHHH
Q 026780 137 KASAKDILNVKELIDKK---AWPYVQNDLRLRASYLRYDLNTII--------------SAKPK--DEKQSLKNLTGKLFQ 197 (233)
Q Consensus 137 kesA~~L~~lk~lIdkk---sW~~vr~~LRlka~~Lr~DL~tli--------------sskPk--d~Kk~l~~La~kLF~ 197 (233)
+.-...+-.|..++..+ +|..+....+. |. .+...+ .++|+ +++..++.++.+|-.
T Consensus 17 ~~m~~~~~~l~~m~kg~~~~d~~~~~~~A~~----l~-~~a~~~~~~F~~gs~~g~s~~A~p~IW~~~~~F~~~~~~~~~ 91 (129)
T 2j8w_A 17 TLIANHFGRVAAMAQGKAPFDAKVAAENIAL----VS-TLSKLPLTAFGPGTDKGHGTEAKPAVWSDAAGFKAAADKFAA 91 (129)
T ss_dssp HHHHHHHHHHHHHHTTSSCCCHHHHHHHHHH----HH-HHHTSGGGSCCTTCCSSTTCCBCTHHHHTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCCCCHHHHHHHHHH----HH-HHHhhhHHhCCCCCCCCCccccCHHHHhCHHHHHHHHHHHHH
Confidence 34444555777888544 66666554432 22 122222 24454 466889999999999
Q ss_pred hhhhhHHHHhcCChHHHHHHHHHHHHH
Q 026780 198 TIGNLDHAAKIKSTPEAEKYYAETVST 224 (233)
Q Consensus 198 ~le~LD~AaR~Kn~~~a~~~Y~~tv~~ 224 (233)
..++|-.++..+|.......+..+..+
T Consensus 92 aa~~L~~aA~~~D~~~~~~a~~~v~~s 118 (129)
T 2j8w_A 92 AVDKLDAAGKTGDFAQIKAAVGETGGA 118 (129)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 999999999999999888888776543
No 19
>2ykz_A Cytochrome C'; electron transport, haemoprotein, 4-helix bundle; HET: PCA HEC; 0.84A {Achromobacter xylosoxidans} PDB: 3zqv_A* 2xlm_A* 1e83_A* 1e84_A* 1e86_A* 1e85_A* 2yld_A* 2yli_A* 1cgo_A* 2xle_A* 2xm0_A* 2xlw_A* 2xld_A* 2xm4_A* 2xlo_A* 2yl0_A* 2yl1_A* 2ylg_A* 3zqy_A* 2xl6_A* ...
Probab=35.55 E-value=92 Score=23.69 Aligned_cols=46 Identities=17% Similarity=0.251 Sum_probs=38.6
Q ss_pred cCCh--hhHHHHHHHHHHHHHhhhhhHHHHhcCChHHHHHHHHHHHHH
Q 026780 179 AKPK--DEKQSLKNLTGKLFQTIGNLDHAAKIKSTPEAEKYYAETVST 224 (233)
Q Consensus 179 skPk--d~Kk~l~~La~kLF~~le~LD~AaR~Kn~~~a~~~Y~~tv~~ 224 (233)
++|+ +++..++.++.+|-...++|-.++..+|.......+..+..+
T Consensus 68 A~p~IW~~~~~F~~~~~~~~~aa~~l~~aA~~gD~~~~~~a~~~v~~s 115 (127)
T 2ykz_A 68 ARPEIWSDAASFKQKQQAFQDNIVKLSAAADAGDLDKLRAAFGDVGAS 115 (127)
T ss_dssp BCTHHHHCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred cCHHHHhCHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence 5554 466889999999999999999999999999888887776543
No 20
>2a0b_A HPT domain; sensory transduction, histidine kinase, phosphotransfer, two-component system, four-helix bundle; 1.57A {Escherichia coli} SCOP: a.24.10.1 PDB: 1bdj_B 1fr0_A 1a0b_A
Probab=33.51 E-value=1.4e+02 Score=21.98 Aligned_cols=27 Identities=4% Similarity=-0.079 Sum_probs=18.0
Q ss_pred HHHHHHHHHHHHHhhhCChhHHHHHHh
Q 026780 137 KASAKDILNVKELIDKKAWPYVQNDLR 163 (233)
Q Consensus 137 kesA~~L~~lk~lIdkksW~~vr~~LR 163 (233)
.++.+.|..|+..+....|..+....|
T Consensus 38 ~e~~~~l~~L~~a~~~~d~~~~~~~aH 64 (125)
T 2a0b_A 38 KMMPGYVSVLESNLTAQDKKGIVEEGH 64 (125)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 445555667777777778877766554
No 21
>3bpv_A Transcriptional regulator; MARR, DNA binding, transcription factor, winged helix motif, DNA-binding; 1.40A {Methanobacterium thermoautotrophicum} PDB: 3bpx_A*
Probab=32.15 E-value=72 Score=22.91 Aligned_cols=31 Identities=10% Similarity=0.231 Sum_probs=24.5
Q ss_pred HHHHHhcCChhhHHHHHHHHHHHHHhhhhhH
Q 026780 173 LNTIISAKPKDEKQSLKNLTGKLFQTIGNLD 203 (233)
Q Consensus 173 L~tlisskPkd~Kk~l~~La~kLF~~le~LD 203 (233)
+..+++.+++++.+.+.++-.++.++++++|
T Consensus 108 ~~~~~~~l~~~e~~~l~~~l~~~~~~l~~~~ 138 (138)
T 3bpv_A 108 EDLLFRDFTEDERKLFRKMCRRLAEEAVRMR 138 (138)
T ss_dssp HHHHTTTSCHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHHHHhcC
Confidence 3446667798898999999999999888764
No 22
>1cpq_A Cytochrome C'; electron transport; HET: HEM; 1.72A {Rhodobacter capsulatus} SCOP: a.24.3.2 PDB: 1eky_A 1nbb_A* 1rcp_A* 1cpr_A*
Probab=31.25 E-value=1.2e+02 Score=23.20 Aligned_cols=46 Identities=13% Similarity=0.024 Sum_probs=38.3
Q ss_pred cCCh--hhHHHHHHHHHHHHHhhhhhHHHHhcCChHHHHHHHHHHHHH
Q 026780 179 AKPK--DEKQSLKNLTGKLFQTIGNLDHAAKIKSTPEAEKYYAETVST 224 (233)
Q Consensus 179 skPk--d~Kk~l~~La~kLF~~le~LD~AaR~Kn~~~a~~~Y~~tv~~ 224 (233)
++|+ +++..++.++.+|-...+.|-.++..+|.......+..+...
T Consensus 70 A~p~IW~~~~~F~~~~~~~~~aa~~L~~aA~~gD~~~~~~a~~~v~~~ 117 (129)
T 1cpq_A 70 AKAAIWANMDDFGAKGKAMHEAGGAVIAAANAGDGAAFGAALQKLGGT 117 (129)
T ss_dssp BCTHHHHSHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred cCHHHHhCHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhH
Confidence 5564 466889999999999999999999999998888877776543
No 23
>2kho_A Heat shock protein 70; molecular chaperone, HSP70, peptide binding, protein folding, acetylation, ATP-binding, cell inner membrane; NMR {Escherichia coli}
Probab=30.86 E-value=2.4e+02 Score=26.75 Aligned_cols=97 Identities=9% Similarity=0.023 Sum_probs=47.6
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHhhhCChhHHHHHHhhhhhhHHHHHHHHHhcCChhhHHHHHHHHHHHHHhhhhhHH
Q 026780 125 QPLSPAQAAERAKASAKDILNVKELIDKKAWPYVQNDLRLRASYLRYDLNTIISAKPKDEKQSLKNLTGKLFQTIGNLDH 204 (233)
Q Consensus 125 q~ls~~ea~~RIkesA~~L~~lk~lIdkksW~~vr~~LRlka~~Lr~DL~tlisskPkd~Kk~l~~La~kLF~~le~LD~ 204 (233)
.++|.+|-...+++.. .+.. +.-..+...+.+|.|-.-...++.-|..+-.-+++++|+.+.+.-+++-+-++
T Consensus 505 ~~ls~~~i~~~~~~~~-~~~~--~d~~~~~~~~~~n~~e~~~~~~~~~l~~~~~~~~~~~~~~i~~~~~~~~~~l~---- 577 (605)
T 2kho_A 505 SGLNEDEIQKMVRDAE-ANAE--ADRKFDELVQTRNQGDHLLHSTRKQVEEAGDKLPADDKTAIESALTALETALK---- 577 (605)
T ss_dssp SSCCHHHHHHHHHHHH-HSHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHHHHHTT----
T ss_pred cCCCHHHHHHHHHHHH-HHHH--hHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCHHHHHHHHHHHHHHHHHHh----
Confidence 4678777665555543 2211 12222233344444433333333333332223588898888777776665554
Q ss_pred HHhcCChHHHHHHHHHHHHHHHHHHhh
Q 026780 205 AAKIKSTPEAEKYYAETVSTLNDVLSK 231 (233)
Q Consensus 205 AaR~Kn~~~a~~~Y~~tv~~LdevLa~ 231 (233)
..+..+-+..+++..+.++.+..+
T Consensus 578 ---~~~~~~~~~~~~~l~~~~~~~~~~ 601 (605)
T 2kho_A 578 ---GEDKAAIEAKMQELAQVSQKLMEI 601 (605)
T ss_dssp ---SSCHHHHHHHHHHHHTTCHHHHHH
T ss_pred ---cCCHHHHHHHHHHHHHHHHHHHHH
Confidence 224445444555544444444444
No 24
>4ani_A Protein GRPE; chaperone cycle, complementary assay; 4.09A {Geobacillus kaustophilus}
Probab=30.85 E-value=2.5e+02 Score=23.94 Aligned_cols=50 Identities=26% Similarity=0.334 Sum_probs=35.6
Q ss_pred hHHHHHHHHHHHHHhhhhhHHHHhc----CChHHHHHHHHHHHHHHHHHHhhhC
Q 026780 184 EKQSLKNLTGKLFQTIGNLDHAAKI----KSTPEAEKYYAETVSTLNDVLSKVG 233 (233)
Q Consensus 184 ~Kk~l~~La~kLF~~le~LD~AaR~----Kn~~~a~~~Y~~tv~~LdevLa~l~ 233 (233)
.+-...+++++|..-+++|+.|... .+...-..=++-+.+.|.++|.+.|
T Consensus 104 ~~~a~e~~~~~LLpVlDnlerAl~~~~~~~~~~~l~eGvemi~k~l~~~L~k~G 157 (213)
T 4ani_A 104 EKYRAQSLASDLLPVLDNFERALKIETDNEQAKSILQGMEMVYRSLVDALKKEG 157 (213)
T ss_dssp HHHTTHHHHHHHHHHHHHHHHHHSCCSCCSTHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHHHHHCC
Confidence 3445567789999999999999863 2333344456777788888887765
No 25
>2p06_A Hypothetical protein AF_0060; MCSG, PSI2, MAD, structural genomics, singleton, predicted C region AF_0060; 2.10A {Archaeoglobus fulgidus dsm 4304} SCOP: a.204.1.3
Probab=30.11 E-value=38 Score=25.96 Aligned_cols=30 Identities=17% Similarity=0.457 Sum_probs=23.7
Q ss_pred HHHHHHHHHHhhhCChhHHHHHHhhhhhhH
Q 026780 140 AKDILNVKELIDKKAWPYVQNDLRLRASYL 169 (233)
Q Consensus 140 A~~L~~lk~lIdkksW~~vr~~LRlka~~L 169 (233)
-++|..+++-+++..|...|..|---+.|-
T Consensus 66 feemdelreavekedwenlrdelldvanfc 95 (114)
T 2p06_A 66 FEEMDELREAVEKEDWENLRDELLDVANFC 95 (114)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 457889999999999999888775555443
No 26
>3us6_A Histidine-containing phosphotransfer protein type MTHPT1; helix bundle, plant hormone signal transduction, cytokinin S transduction; 1.45A {Medicago truncatula}
Probab=28.80 E-value=2.1e+02 Score=22.47 Aligned_cols=18 Identities=17% Similarity=0.287 Sum_probs=8.8
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 026780 212 PEAEKYYAETVSTLNDVL 229 (233)
Q Consensus 212 ~~a~~~Y~~tv~~LdevL 229 (233)
.+.+..|..+...|+.++
T Consensus 117 ~~l~~e~~~v~~~L~~~~ 134 (153)
T 3us6_A 117 QQVKQEYLLVKNKLETLL 134 (153)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 344445555555555443
No 27
>2ck3_A ATP synthase subunit alpha\, mitochondrial; hydrolase; HET: ANP ADP; 1.9A {Bos taurus} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 PDB: 1bmf_A* 1e1q_A* 1e1r_A* 1e79_A* 1h8h_A* 1nbm_A* 1ohh_A* 1qo1_A 1w0j_A* 1w0k_A* 1h8e_A* 2jdi_A* 2wss_A* 2w6j_A 2w6e_A 2w6g_A 2w6f_A 2w6h_A 2w6i_A 1cow_A* ...
Probab=28.30 E-value=1.5e+02 Score=28.50 Aligned_cols=67 Identities=15% Similarity=0.144 Sum_probs=47.8
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHhhhCChhHHHHHHhhhhhhHHH---HH-HHHHhcC--ChhhHHHHHHHHHHHHHh
Q 026780 126 PLSPAQAAERAKASAKDILNVKELIDKKAWPYVQNDLRLRASYLRY---DL-NTIISAK--PKDEKQSLKNLTGKLFQT 198 (233)
Q Consensus 126 ~ls~~ea~~RIkesA~~L~~lk~lIdkksW~~vr~~LRlka~~Lr~---DL-~tlissk--Pkd~Kk~l~~La~kLF~~ 198 (233)
+.+.++.+..+... .+.++++-.|.++..+.+.-..|++. |+ +.+-.++ .++.++.+++..++|-+.
T Consensus 435 ~~~~~~~~~~l~~~------~~g~l~~i~~~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~~ 507 (510)
T 2ck3_A 435 PMAIEEQVAVIYAG------VRGYLDKLEPSKITKFENAFLSHVISQHQALLGKIRTDGKISEESDAKLKEIVTNFLAG 507 (510)
T ss_dssp CCCHHHHHHHHHHH------HTTSSTTSCGGGHHHHHHHHHHHHHHHCHHHHHHHHHSSSCCHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHH------HhhhhcCCCHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHH
Confidence 35778887777764 67888999999999999998888884 33 3333333 666667777777666543
No 28
>3iqt_A Signal transduction histidine-protein kinase BARA; histidine phosphotransfer domain, HTP, structural genomics, protein structure initiative; HET: MSE BTB; 1.40A {Escherichia coli}
Probab=28.27 E-value=1.3e+02 Score=23.01 Aligned_cols=29 Identities=7% Similarity=-0.164 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHhhhCChhHHHHHHhh
Q 026780 136 AKASAKDILNVKELIDKKAWPYVQNDLRL 164 (233)
Q Consensus 136 IkesA~~L~~lk~lIdkksW~~vr~~LRl 164 (233)
+.+..+++..|+..++...|..++...|.
T Consensus 39 l~~~~~~~~~l~~a~~~~d~~~l~~~aHk 67 (123)
T 3iqt_A 39 LDFLPEVRNKVEEQLVGENPEGLVDLIHK 67 (123)
T ss_dssp HHHHHHHHHHHHHHHTTCCCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 34455666788888999999999888775
No 29
>3myf_A Sensor protein; HPT, histidine kinase, PSI, MCSG, structural genomics, midwe for structural genomics, protein structure initiative, TRAN; HET: MSE; 1.80A {Shewanella SP}
Probab=26.91 E-value=2e+02 Score=21.56 Aligned_cols=29 Identities=0% Similarity=0.083 Sum_probs=22.0
Q ss_pred HHHHHHHHHHHHHHhhhCChhHHHHHHhh
Q 026780 136 AKASAKDILNVKELIDKKAWPYVQNDLRL 164 (233)
Q Consensus 136 IkesA~~L~~lk~lIdkksW~~vr~~LRl 164 (233)
+.+..+++..|+..++...|..++...|.
T Consensus 30 l~~~~~~~~~l~~a~~~~d~~~l~~~aHk 58 (119)
T 3myf_A 30 LDSLPETVEKIQTALGQNDQATMLSTIHK 58 (119)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 34445566788888898999999888775
No 30
>1naf_A ADP-ribosylation factor binding protein GGA1, golgi-localized, gamma EAR-; clathrin-adaptor, GAT domain, helical paper-CLIP, three-helix bundle; 2.80A {Homo sapiens} SCOP: a.7.8.1
Probab=26.21 E-value=1.2e+02 Score=24.84 Aligned_cols=26 Identities=23% Similarity=0.463 Sum_probs=19.5
Q ss_pred HHHHHhcC-ChhhHHHHHHHHHHHHHhhhhhH
Q 026780 173 LNTIISAK-PKDEKQSLKNLTGKLFQTIGNLD 203 (233)
Q Consensus 173 L~tlissk-Pkd~Kk~l~~La~kLF~~le~LD 203 (233)
|..||.+. |+|-+. ||+|...|-.-|
T Consensus 22 L~~Lirs~~PeDL~~-----AN~LiK~m~~~d 48 (158)
T 1naf_A 22 LARLLKSSHPEDLRA-----ANKLIKEMVQED 48 (158)
T ss_dssp HHHHHSSCSTTHHHH-----HHHHHHHHHHHH
T ss_pred HHHHHhcCChhhHHH-----HHHHHHHHhccc
Confidence 55788888 887755 788888887755
No 31
>3vr4_A V-type sodium ATPase catalytic subunit A; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_A* 3vr2_A* 3vr5_A 3vr6_A*
Probab=25.82 E-value=1.9e+02 Score=28.57 Aligned_cols=79 Identities=11% Similarity=0.121 Sum_probs=39.6
Q ss_pred ccccccCC--------CCHHHHHHHHHHHHHHHHHHHHHhh-hCChhHHHHHHhhhhhhHHHHHHHHHhcCChhhHHHHH
Q 026780 119 KERFFIQP--------LSPAQAAERAKASAKDILNVKELID-KKAWPYVQNDLRLRASYLRYDLNTIISAKPKDEKQSLK 189 (233)
Q Consensus 119 k~rf~~q~--------ls~~ea~~RIkesA~~L~~lk~lId-kksW~~vr~~LRlka~~Lr~DL~tlisskPkd~Kk~l~ 189 (233)
.++|..|+ -+++.....++.-..=...-.++|+ .-.|..++++.- -+++.+.++ .-.|.++...+.
T Consensus 504 ~e~fL~Q~~f~~~d~~~~~~kq~~~l~~i~~~~~~~~~~~~~~~~~~~i~~~~~----~~~~~~~~~-k~~~~~~~~~~~ 578 (600)
T 3vr4_A 504 REDYLQQNAFDDVDTFTSREKQFNMLKVILTFGKEARKALSLGAYFNEIMEGTV----AVRERISRS-KYIPEEELAKIS 578 (600)
T ss_dssp HHHTTCCCTTSTTTTCCCHHHHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHCH----HHHHHHHTG-GGSCGGGTHHHH
T ss_pred HHHhCCCCCcCCccccCCHHHHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHhH----HHHHHHHHh-cCCCcchHHHHH
Confidence 35777777 3444444444433222223334444 467999887421 133333333 123444456666
Q ss_pred HHHHHHHHhhhhh
Q 026780 190 NLTGKLFQTIGNL 202 (233)
Q Consensus 190 ~La~kLF~~le~L 202 (233)
++.+++-+.|++|
T Consensus 579 ~~~~~~~~~~~~~ 591 (600)
T 3vr4_A 579 SINEEIKETIQLI 591 (600)
T ss_dssp THHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 6666665555555
No 32
>2c5k_T Syntaxin TLG1, T-snare affecting A late golgi compartment protein 1; protein transport/complex, snare, VFT complex, protein transport, phosphorylation; 2.05A {Saccharomyces cerevisiae} PDB: 2c5j_A 2c5i_T
Probab=25.32 E-value=2.1e+02 Score=21.24 Aligned_cols=54 Identities=15% Similarity=0.244 Sum_probs=37.1
Q ss_pred hhHHHHHHhhhhhhHHHHHHHHHhcCChhhHHHHHHHHHHHHHhhhhhHHHHhc
Q 026780 155 WPYVQNDLRLRASYLRYDLNTIISAKPKDEKQSLKNLTGKLFQTIGNLDHAAKI 208 (233)
Q Consensus 155 W~~vr~~LRlka~~Lr~DL~tlisskPkd~Kk~l~~La~kLF~~le~LD~AaR~ 208 (233)
...|+.+++-....|+.-++.--..-.+..++++.....+|=..+++|+.++..
T Consensus 8 F~~V~~D~~~ql~~l~~~~~~~~~~~~~~~~~El~~~l~el~e~l~DL~~SI~i 61 (95)
T 2c5k_T 8 FQQVVKDTKEQLNRINNYITRHNTAGDDDQEEEIQDILKDVEETIVDLDRSIIV 61 (95)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCCC--CTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345666666666666666543100012578899999999999999999999865
No 33
>3o10_A Sacsin; all-helical domain, homodimerization, chaperone; 1.90A {Homo sapiens}
Probab=25.16 E-value=2.4e+02 Score=21.82 Aligned_cols=103 Identities=12% Similarity=0.118 Sum_probs=67.3
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHhhhCChhHHHHHHhhhhhhHHHHHHHHH-hcCCh--hhHHHHHHHHH------HHHHh
Q 026780 128 SPAQAAERAKASAKDILNVKELIDKKAWPYVQNDLRLRASYLRYDLNTII-SAKPK--DEKQSLKNLTG------KLFQT 198 (233)
Q Consensus 128 s~~ea~~RIkesA~~L~~lk~lIdkksW~~vr~~LRlka~~Lr~DL~tli-sskPk--d~Kk~l~~La~------kLF~~ 198 (233)
..+++...++++..+|...+.++++..|+.+-+..+.-+.....-+--.. ..-|+ +-+.-+..+.+ .+.+.
T Consensus 5 ~~ee~~~wl~~A~~dl~~A~~~~~~g~y~~a~F~aqQA~Ek~lKa~L~~~~g~~p~~H~l~~L~~~~~~~~~~~~~~~~~ 84 (141)
T 3o10_A 5 NPVEARRWLRQARANFSAARNDLHKNANEWVCFKCYLSTKLALIAADYAVRGKSDKDVKPTALAQKIEEYSQQLEGLTND 84 (141)
T ss_dssp CHHHHHHHHHHHHHHHHHHGGGTTTTCHHHHHHHHHHHHHHHHHHHHHHHHSCCCTTSCHHHHHHHHHTTCGGGTTHHHH
T ss_pred ChHHHHHHHHHHHhhhhHHhhHHhhCccceEeeehhHHHHHHHHHHHHHhcCCCcccCCcHHHHHHHHHHHHHHHhhhhh
Confidence 57899999999999999999999999999999999888766555543332 22254 23333333321 34555
Q ss_pred hhhhHHH----HhcC---------------ChHHHHHHHHHHHHHHHHHHh
Q 026780 199 IGNLDHA----AKIK---------------STPEAEKYYAETVSTLNDVLS 230 (233)
Q Consensus 199 le~LD~A----aR~K---------------n~~~a~~~Y~~tv~~LdevLa 230 (233)
++.|+.. +.++ +..+|+.+.+.+...++-|-.
T Consensus 85 ~~~L~~~~~~yi~sRYPd~~~~~~~P~e~yt~~~Ae~al~~A~~v~~~v~~ 135 (141)
T 3o10_A 85 VHTLEAYGVDSLKTRYPDLLPFPQIPNDRFTSEVAMRVMECTACIIIKLEN 135 (141)
T ss_dssp HHHHHHTTCCTTTTTCGGGSSTTCCHHHHCCHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHhhCcchhhhcCCccCCCCCCCcchhhHHHHHHHHHhhhhhhhhHHh
Confidence 6666664 2222 455677777776666654433
No 34
>2rpa_A Katanin P60 ATPase-containing subunit A1; AAA ATPase, ATP-binding, cell cycle, cell division, cytoplas hydrolase, microtubule; NMR {Mus musculus}
Probab=25.14 E-value=1.4e+02 Score=21.65 Aligned_cols=38 Identities=18% Similarity=0.252 Sum_probs=29.6
Q ss_pred HHHhhhhhHHHHhcCChHHHHHHHHHHHHHHHHHHhhh
Q 026780 195 LFQTIGNLDHAAKIKSTPEAEKYYAETVSTLNDVLSKV 232 (233)
Q Consensus 195 LF~~le~LD~AaR~Kn~~~a~~~Y~~tv~~LdevLa~l 232 (233)
+-+++..==..|..+|.+.+..||+.++..|+.++.-+
T Consensus 12 i~e~~k~ARe~Al~GnYdta~~yY~g~~~qI~k~l~~~ 49 (78)
T 2rpa_A 12 IVENVKLAREYALLGNYDSAMVYYQGVLDQMNKYLYSV 49 (78)
T ss_dssp HHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHhc
Confidence 33444444467788999999999999999999988654
No 35
>3s2w_A Transcriptional regulator, MARR family; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 2.45A {Methanosarcina mazei}
Probab=24.85 E-value=1.8e+02 Score=21.59 Aligned_cols=34 Identities=9% Similarity=0.033 Sum_probs=26.0
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHHHHHhhhhh
Q 026780 169 LRYDLNTIISAKPKDEKQSLKNLTGKLFQTIGNL 202 (233)
Q Consensus 169 Lr~DL~tlisskPkd~Kk~l~~La~kLF~~le~L 202 (233)
...-...+...+++++.+.+.++-+++.++++++
T Consensus 125 ~~~~~~~~~~~l~~~e~~~l~~~l~~l~~~l~~~ 158 (159)
T 3s2w_A 125 ASEWGEILFSSFDDRQRREITNSLEIMFENGLKI 158 (159)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHhc
Confidence 3333445667788889899999999999988875
No 36
>1dkg_A Nucleotide exchange factor GRPE; HSP70, GRPE, nucleotide exchange factor, coiled-coil, complex (HSP24/HSP70); 2.80A {Escherichia coli} SCOP: b.73.1.1 h.1.9.1
Probab=24.61 E-value=2.9e+02 Score=23.03 Aligned_cols=69 Identities=22% Similarity=0.340 Sum_probs=42.1
Q ss_pred HHHhhhhhhHHHHHHHHHhcCCh----hhHHHHHHHHHHHHHhhhhhHHHHhcCC-----hHHHHHHHHHHHHHHHHHHh
Q 026780 160 NDLRLRASYLRYDLNTIISAKPK----DEKQSLKNLTGKLFQTIGNLDHAAKIKS-----TPEAEKYYAETVSTLNDVLS 230 (233)
Q Consensus 160 ~~LRlka~~Lr~DL~tlisskPk----d~Kk~l~~La~kLF~~le~LD~AaR~Kn-----~~~a~~~Y~~tv~~LdevLa 230 (233)
.|||+.+ |+.++-...-+ ..+-...+++++|..-+++|+.|...-+ ...-..=++-|.+.|.++|.
T Consensus 61 ~~lR~~A-----e~eN~rkR~~ke~~~~~~~a~~~~~~~LLpv~DnlerAl~~~~~~~~~~~~l~~Gv~~~~~~l~~~L~ 135 (197)
T 1dkg_A 61 GILRVKA-----EMENLRRRTELDIEKAHKFALEKFINELLPVIDSLDRALEVADKANPDMSAMVEDIELTLKSMLDVVR 135 (197)
T ss_dssp HHHHHHH-----HHHHHHHHHHHHHHHHHHTSGGGHHHHSHHHHHHHHHHHHCC------CHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHHH
Confidence 5666665 55555433322 2223345788999999999999987532 12223446666777777777
Q ss_pred hhC
Q 026780 231 KVG 233 (233)
Q Consensus 231 ~l~ 233 (233)
+.|
T Consensus 136 ~~G 138 (197)
T 1dkg_A 136 KFG 138 (197)
T ss_dssp TTT
T ss_pred HCC
Confidence 654
No 37
>2j8p_A Cleavage stimulation factor 64 kDa subunit; cleavage/polyadenylation, alternative splicing RNA15, PCF11, CSTF-64, RNA-binding, nuclear protein; NMR {Homo sapiens}
Probab=23.45 E-value=43 Score=22.70 Aligned_cols=23 Identities=22% Similarity=0.368 Sum_probs=18.9
Q ss_pred HHhcCChhhHHHHHHHHHHHHHh
Q 026780 176 IISAKPKDEKQSLKNLTGKLFQT 198 (233)
Q Consensus 176 lisskPkd~Kk~l~~La~kLF~~ 198 (233)
-|+.+|.++|..+..|-..|-.+
T Consensus 23 QI~~LPp~qR~qI~~LR~q~~~~ 45 (49)
T 2j8p_A 23 QIAMLPPEQRQSILILKEQIQKS 45 (49)
T ss_dssp HHHTSCHHHHTHHHHHHHHHHCC
T ss_pred HHHhCCHHHHHHHHHHHHHHHhc
Confidence 38899999999999988776543
No 38
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=23.36 E-value=2.7e+02 Score=23.14 Aligned_cols=106 Identities=14% Similarity=0.080 Sum_probs=47.8
Q ss_pred ccccccc---ccCCCCHHHHHHHHHHHHHHHHHHHHHhhhCCh-h-HHHHHH-hhhhhhHHHHHHHHHhcC--ChhhHHH
Q 026780 116 LPLKERF---FIQPLSPAQAAERAKASAKDILNVKELIDKKAW-P-YVQNDL-RLRASYLRYDLNTIISAK--PKDEKQS 187 (233)
Q Consensus 116 l~lk~rf---~~q~ls~~ea~~RIkesA~~L~~lk~lIdkksW-~-~vr~~L-Rlka~~Lr~DL~tlissk--Pkd~Kk~ 187 (233)
-+++.|| .+++.+.++-..-++...+.+...-.- +.... + ++..+| +..-|++|.-++.|-... ..-....
T Consensus 151 ~~l~sR~~~i~~~~~~~~e~~~il~~~~~~l~~~~~~-~~~~~~~~~~~~~l~~~~~gd~R~a~~~L~~~~~~~~i~~~~ 229 (324)
T 3u61_B 151 KPLQSRCRVITFGQPTDEDKIEMMKQMIRRLTEICKH-EGIAIADMKVVAALVKKNFPDFRKTIGELDSYSSKGVLDAGI 229 (324)
T ss_dssp TTHHHHSEEEECCCCCHHHHHHHHHHHHHHHHHHHHH-HTCCBSCHHHHHHHHHHTCSCTTHHHHHHHHHGGGTCBCC--
T ss_pred HHHHhhCcEEEeCCCCHHHHHHHHHHHHHHHHHHHHH-cCCCCCcHHHHHHHHHhCCCCHHHHHHHHHHHhccCCCCHHH
Confidence 3555554 677888777543333333333211000 01111 1 333333 334477777666665442 0001122
Q ss_pred HHHHHHHHHHhhhhhHHHHhcCChHHHHHHHHHHHH
Q 026780 188 LKNLTGKLFQTIGNLDHAAKIKSTPEAEKYYAETVS 223 (233)
Q Consensus 188 l~~La~kLF~~le~LD~AaR~Kn~~~a~~~Y~~tv~ 223 (233)
+..+..+ -+.+.++-.+++.++..++...|.+...
T Consensus 230 v~~~~~~-~~~i~~~~~~~~~~~~~~a~~~~~~l~~ 264 (324)
T 3u61_B 230 LSLVTND-RGAIDDVLESLKNKDVKQLRALAPKYAA 264 (324)
T ss_dssp -----------CHHHHHHHHTTCHHHHHHHHHHHSS
T ss_pred HHHHhCC-HHHHHHHHHHHHcCCHHHHHHHHHHhcc
Confidence 2222222 2355666677888999888887776443
No 39
>3r8n_T 30S ribosomal protein S20; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 2ykr_T 3fih_T* 3j18_T* 2wwl_T 3oar_T 3oaq_T 3ofb_T 3ofa_T 3ofp_T 3ofx_T 3ofy_T 3ofo_T 3r8o_T 4a2i_T 4gd1_T 4gd2_T 2qal_T* 1p6g_T 1p87_T 2aw7_T ...
Probab=23.32 E-value=1.7e+02 Score=21.60 Aligned_cols=30 Identities=13% Similarity=0.159 Sum_probs=22.9
Q ss_pred hhHHHHhcCChHHHHHHHHHHHHHHHHHHh
Q 026780 201 NLDHAAKIKSTPEAEKYYAETVSTLNDVLS 230 (233)
Q Consensus 201 ~LD~AaR~Kn~~~a~~~Y~~tv~~LdevLa 230 (233)
++..|+..+|..+++..|..+...||-...
T Consensus 32 k~~~Ai~~gd~~~A~~~l~~a~~~iDkaa~ 61 (85)
T 3r8n_T 32 KVYAAIEAGDKAAAQKAFNEMQPIVDRQAA 61 (85)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHHHH
Confidence 344566678888899999999988887654
No 40
>2r9v_A ATP synthase subunit alpha; TM1612, structural genomics, JOI for structural genomics, JCSG, protein structure initiative ATP synthesis; HET: ATP PG4; 2.10A {Thermotoga maritima MSB8}
Probab=23.26 E-value=1.9e+02 Score=27.89 Aligned_cols=66 Identities=14% Similarity=0.166 Sum_probs=46.3
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHhhhCChhHHHHHHhhhhhhHHHH---H-HHHHhcC--ChhhHHHHHHHHHHHHH
Q 026780 126 PLSPAQAAERAKASAKDILNVKELIDKKAWPYVQNDLRLRASYLRYD---L-NTIISAK--PKDEKQSLKNLTGKLFQ 197 (233)
Q Consensus 126 ~ls~~ea~~RIkesA~~L~~lk~lIdkksW~~vr~~LRlka~~Lr~D---L-~tlissk--Pkd~Kk~l~~La~kLF~ 197 (233)
+.+.++.+..+... .++++++-.+.++..+.+.-..|++.. + +.+-.++ .++.++.+++..++|-+
T Consensus 440 ~~~~~e~~~~l~~~------~~g~ld~i~~~~i~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~~~~~ 511 (515)
T 2r9v_A 440 PMPVEEQVVVLFAG------VRGYLDDLPVEEVRRFEKEFLRFMHEKHQDILDDIKTKKELTSETEEKLKKAIEEFKT 511 (515)
T ss_dssp CCCHHHHHHHHHHH------HTTTTTTSCGGGHHHHHHHHHHHHHHHCHHHHHHHHHHSSCCHHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHH------HhhhhccccHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCHHHHHHHHHHHHHHHH
Confidence 34778877777664 678889999999999999888888843 3 3333333 66666777776666644
No 41
>3r84_A Mediator of RNA polymerase II transcription subun; four-helix bundle, nucleus; HET: MSE; 2.05A {Saccharomyces cerevisiae}
Probab=23.05 E-value=1.3e+02 Score=22.51 Aligned_cols=27 Identities=7% Similarity=0.234 Sum_probs=23.5
Q ss_pred ChhhHHHHHHHHHHHHHhhhhhHHHHh
Q 026780 181 PKDEKQSLKNLTGKLFQTIGNLDHAAK 207 (233)
Q Consensus 181 Pkd~Kk~l~~La~kLF~~le~LD~AaR 207 (233)
+.+.|++++.-++.||..++..|-..|
T Consensus 38 ~~~~K~~F~~~t~~fy~tL~~v~v~Lr 64 (86)
T 3r84_A 38 NESVKPQFENHVKQFYERLDKSTTQLR 64 (86)
T ss_dssp CGGGHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467999999999999999999887665
No 42
>3bj6_A Transcriptional regulator, MARR family; helix-turn-helix, trasnscription regulator, STR genomics, PSI-2, protein structure initiative; 2.01A {Silicibacter pomeroyi dss-3}
Probab=22.92 E-value=2.2e+02 Score=20.64 Aligned_cols=32 Identities=13% Similarity=0.072 Sum_probs=26.0
Q ss_pred HHHHHhcCChhhHHHHHHHHHHHHHhhhhhHH
Q 026780 173 LNTIISAKPKDEKQSLKNLTGKLFQTIGNLDH 204 (233)
Q Consensus 173 L~tlisskPkd~Kk~l~~La~kLF~~le~LD~ 204 (233)
+..+...+++++.+.+.++-.++.+++++.+.
T Consensus 119 ~~~~~~~l~~~e~~~l~~~l~~l~~~l~~~~~ 150 (152)
T 3bj6_A 119 LALFSEGFSSVELTAYHKVQLALTRFFADLAK 150 (152)
T ss_dssp HHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHHHHhhhc
Confidence 34566778988989999999999999888764
No 43
>3a6m_A Protein GRPE, HSP-70 cofactor; coiled-coil, four-helix bundle, dimer, chaperone, STRE response; 3.23A {Thermus thermophilus}
Probab=22.89 E-value=2.4e+02 Score=23.23 Aligned_cols=72 Identities=18% Similarity=0.246 Sum_probs=44.5
Q ss_pred HHHHhhhhhh--HHHHHHHHHhcCChhhHHHHHHHHHHHHHhhhhhHHHHhcC--ChHHHHHHHHHHHHHHHHHHhhhC
Q 026780 159 QNDLRLRASY--LRYDLNTIISAKPKDEKQSLKNLTGKLFQTIGNLDHAAKIK--STPEAEKYYAETVSTLNDVLSKVG 233 (233)
Q Consensus 159 r~~LRlka~~--Lr~DL~tlisskPkd~Kk~l~~La~kLF~~le~LD~AaR~K--n~~~a~~~Y~~tv~~LdevLa~l~ 233 (233)
-.|+|..+-| +|.= ....+-...+-...+++++|..-+++|+.|.... +......-++-+.+.|.++|.+.|
T Consensus 40 d~~lR~~Ae~eN~rkR---~~rE~e~~~~~a~e~~~~~LLpVlDnlerAl~~~~~~~~~l~~Gv~m~~~~l~~~L~k~G 115 (177)
T 3a6m_A 40 DKYLRLLADFDNYRKR---MEEELKAREREGVLKALRALLPVLDDLDRALEFAEASPESIRQGVRAIRDGFFRILAGLG 115 (177)
T ss_dssp HHHHTTTTTTTTHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTGGGCHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHCC
Confidence 4567777633 2211 1112223344556788999999999999998653 322334456777777788877654
No 44
>2a0b_A HPT domain; sensory transduction, histidine kinase, phosphotransfer, two-component system, four-helix bundle; 1.57A {Escherichia coli} SCOP: a.24.10.1 PDB: 1bdj_B 1fr0_A 1a0b_A
Probab=22.70 E-value=2.3e+02 Score=20.81 Aligned_cols=39 Identities=13% Similarity=0.072 Sum_probs=22.4
Q ss_pred HHHHHhhhhhHHHHhcCChHHH-------HHHHHHHHHHHHHHHhh
Q 026780 193 GKLFQTIGNLDHAAKIKSTPEA-------EKYYAETVSTLNDVLSK 231 (233)
Q Consensus 193 ~kLF~~le~LD~AaR~Kn~~~a-------~~~Y~~tv~~LdevLa~ 231 (233)
..|..-...|..+++..+...+ ...|.+++..|.++++.
T Consensus 76 ~~l~~~~~~lE~~~~~~~~~~~~~~~~~l~~~~~~~~~~L~~~l~~ 121 (125)
T 2a0b_A 76 RHLQQLGQQIQSPDLPAWEDNVGEWIEEMKEEWRHDVEVLKAWVAK 121 (125)
T ss_dssp HHHHHHHHHHTCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3455555566666666655444 44566666666666543
No 45
>3deu_A Transcriptional regulator SLYA; MARR, WING-helix, transcription regulator, activator, DNA-binding, repressor; HET: SAL; 2.30A {Salmonella typhimurium} SCOP: a.4.5.28
Probab=22.66 E-value=1.5e+02 Score=22.62 Aligned_cols=36 Identities=22% Similarity=0.245 Sum_probs=27.3
Q ss_pred hHHHHHHHHHhcCChhhHHHHHHHHHHHHHhhhhhH
Q 026780 168 YLRYDLNTIISAKPKDEKQSLKNLTGKLFQTIGNLD 203 (233)
Q Consensus 168 ~Lr~DL~tlisskPkd~Kk~l~~La~kLF~~le~LD 203 (233)
....-+..+++.+++++++.+.++-.++.+++++++
T Consensus 128 ~~~~~~~~~~~~l~~~e~~~l~~~L~~l~~~l~~~~ 163 (166)
T 3deu_A 128 VIHKTRGEILAGISSEEIELLIKLIAKLEHNIMELH 163 (166)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445666777899998999999999999888765
No 46
>3vrc_A Cytochrome C'; C-type cytpchrome, electron transport; HET: HEC PG4; 1.00A {Thermochromatium tepidum} PDB: 1bbh_A*
Probab=22.07 E-value=2.1e+02 Score=22.15 Aligned_cols=42 Identities=14% Similarity=0.157 Sum_probs=36.9
Q ss_pred hhHHHHHHHHHHHHHhhhhhHHHHhcCChHHHHHHHHHHHHH
Q 026780 183 DEKQSLKNLTGKLFQTIGNLDHAAKIKSTPEAEKYYAETVST 224 (233)
Q Consensus 183 d~Kk~l~~La~kLF~~le~LD~AaR~Kn~~~a~~~Y~~tv~~ 224 (233)
+++..+..++.+|-...+.|-.++..+|.......|..+-.+
T Consensus 79 ~~~~~F~~~~~~~~~aa~~L~~aa~~gd~~~~~~a~~~vg~t 120 (131)
T 3vrc_A 79 QNLEDVGKLARDLGTAANALAAAAATGEANAVKSAFADVGAA 120 (131)
T ss_dssp GCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hCHHHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHH
Confidence 556789999999999999999999999999999888877554
No 47
>1vh6_A Flagellar protein FLIS; structural genomics, unknown function; HET: MSE; 2.50A {Bacillus subtilis} SCOP: a.24.19.1
Probab=21.78 E-value=3e+02 Score=21.77 Aligned_cols=55 Identities=11% Similarity=0.085 Sum_probs=44.0
Q ss_pred HHHHhcCChhhHHHHHHHHHHHHHhhhhhHHHHhcCChHHHHHHHHHHHHHHHHHHhh
Q 026780 174 NTIISAKPKDEKQSLKNLTGKLFQTIGNLDHAAKIKSTPEAEKYYAETVSTLNDVLSK 231 (233)
Q Consensus 174 ~tlisskPkd~Kk~l~~La~kLF~~le~LD~AaR~Kn~~~a~~~Y~~tv~~LdevLa~ 231 (233)
+.|.++-|. +-+.-|+..+.+++..--.|...||..+.-.+-.++...|.++.+-
T Consensus 15 ~~v~tAsP~---~Li~mLydgal~~l~~A~~aie~~d~~~k~~~i~KA~~Ii~eL~~s 69 (145)
T 1vh6_A 15 NSVNTATPG---ELTLMLYNGCLKFIRLAAQAIENDDMERKNENLIKAQNIIQELNFT 69 (145)
T ss_dssp -----CCTT---HHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhHhcCCHH---HHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHH
Confidence 344444466 5688899999999999999999999999999999999999887654
No 48
>2p32_A Heat shock 70 kDa protein A; three-helix bundle, chaperone; 3.20A {Caenorhabditis elegans}
Probab=21.77 E-value=2.5e+02 Score=20.87 Aligned_cols=21 Identities=5% Similarity=0.295 Sum_probs=13.9
Q ss_pred CChhhHHHHHHHHHHHHHhhh
Q 026780 180 KPKDEKQSLKNLTGKLFQTIG 200 (233)
Q Consensus 180 kPkd~Kk~l~~La~kLF~~le 200 (233)
++.++|+.+...-.++-+-|+
T Consensus 43 l~~eek~~I~~~i~el~~~L~ 63 (120)
T 2p32_A 43 ISPEDKKKIEDKCDEILKWLD 63 (120)
T ss_dssp SCHHHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHHH
Confidence 477777777776666665443
No 49
>3mab_A Uncharacterized protein; NYSGXRC, PSI-2, structural genomics; 1.42A {Listeria monocytogenes} PDB: 3bqt_A
Probab=21.46 E-value=1.5e+02 Score=22.00 Aligned_cols=15 Identities=20% Similarity=0.224 Sum_probs=10.1
Q ss_pred cCChhhHHHHHHHHH
Q 026780 179 AKPKDEKQSLKNLTG 193 (233)
Q Consensus 179 skPkd~Kk~l~~La~ 193 (233)
.+|.++|++|++.++
T Consensus 69 ~l~~~~K~~L~~~~~ 83 (93)
T 3mab_A 69 GLDEAKKIELKKFHQ 83 (93)
T ss_dssp GSCHHHHHHHHHHHH
T ss_pred HCCHHHHHHHHHHHH
Confidence 358888888855443
No 50
>3nrv_A Putative transcriptional regulator (MARR/EMRR FAM; PSI-2, protein structure initiati structural genomics; HET: MSE; 2.00A {Acinetobacter SP}
Probab=20.56 E-value=1.8e+02 Score=21.13 Aligned_cols=30 Identities=20% Similarity=0.222 Sum_probs=23.0
Q ss_pred HHHHHhcCChhhHHHHHHHHHHHHHhhhhh
Q 026780 173 LNTIISAKPKDEKQSLKNLTGKLFQTIGNL 202 (233)
Q Consensus 173 L~tlisskPkd~Kk~l~~La~kLF~~le~L 202 (233)
...+...+++++.+.+..+-.++.++++++
T Consensus 119 ~~~~~~~l~~~e~~~l~~~l~~l~~~l~~l 148 (148)
T 3nrv_A 119 EKQLLEEFEEAEKDQLFILLKKLRNKVDQM 148 (148)
T ss_dssp HHHHTTTCCHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHhhcC
Confidence 344556678888888988888888888764
No 51
>3hug_A RNA polymerase sigma factor; ECF sigma factor, zinc binding anti-sigma factor, oxidative transcription regulation; 2.35A {Mycobacterium tuberculosis}
Probab=20.40 E-value=2.2e+02 Score=19.67 Aligned_cols=61 Identities=8% Similarity=0.126 Sum_probs=41.5
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHHHHHhhhhhHHHHhcC-ChHHHHHHHHHHHHHHHHHHhhh
Q 026780 169 LRYDLNTIISAKPKDEKQSLKNLTGKLFQTIGNLDHAAKIK-STPEAEKYYAETVSTLNDVLSKV 232 (233)
Q Consensus 169 Lr~DL~tlisskPkd~Kk~l~~La~kLF~~le~LD~AaR~K-n~~~a~~~Y~~tv~~LdevLa~l 232 (233)
.+..+...+..+|..+|+-+. -.+|+.+.-=+-|..-+ +..-+......+.+.|.+.|..-
T Consensus 27 ~~~~l~~~l~~L~~~~r~vl~---l~~~~g~s~~eIA~~lgis~~tV~~~l~ra~~~Lr~~l~~~ 88 (92)
T 3hug_A 27 DRLLIADALAQLSAEHRAVIQ---RSYYRGWSTAQIATDLGIAEGTVKSRLHYAVRALRLTLQEL 88 (92)
T ss_dssp HHHHHHHHHHTSCHHHHHHHH---HHHTSCCCHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHH---HHHHcCCCHHHHHHHHCcCHHHHHHHHHHHHHHHHHHHHHh
Confidence 455677788889988866442 23455555555555544 67778888888888888887653
No 52
>1hx1_B BAG-1, BAG-family molecular chaperone regulator-1; protein-protein complex, apoptosis, protein folding, molecul chaperone; 1.90A {Homo sapiens} SCOP: a.7.7.1 PDB: 3fzf_B* 3fzh_B* 3fzk_B* 3fzl_B* 3fzm_B* 3ldq_B* 3m3z_B*
Probab=20.38 E-value=3.2e+02 Score=21.48 Aligned_cols=62 Identities=15% Similarity=0.194 Sum_probs=45.6
Q ss_pred hhHHHHHHHHHhcCChhhHHHHHHHHHHHHHhhhhhHHHHhcCChHHHHHHHHHHHHHHHHHHhh
Q 026780 167 SYLRYDLNTIISAKPKDEKQSLKNLTGKLFQTIGNLDHAAKIKSTPEAEKYYAETVSTLNDVLSK 231 (233)
Q Consensus 167 ~~Lr~DL~tlisskPkd~Kk~l~~La~kLF~~le~LD~AaR~Kn~~~a~~~Y~~tv~~LdevLa~ 231 (233)
|||-.++-. .++++=+ |.++..+-.|-..+|.||.-.--.|...+...-.-.|+.++.+|++
T Consensus 40 GFL~kel~~--eal~kld-Krik~~~E~~MK~LE~lDsl~i~e~~~~~R~kRK~lV~~iQ~~l~~ 101 (114)
T 1hx1_B 40 GFLPKDLQA--EALCKLD-RRVKATIEQFMKILEEIDTLILPENFKDSRLKRKGLVKKVQAFLAE 101 (114)
T ss_dssp SCSCHHHHH--HHHHTTH-HHHHHHHHHHHHHHHHHTTCCCCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccHhHH--HHHHHHH-HHHHHHHHHHHHHHHHhhcccCChhHHHHHHHHHHHHHHHHHHHHH
Confidence 555555432 2223323 5577788889999999999888889999888888888888888764
Done!