Your job contains 1 sequence.
>026782
MSLFICLFYVCLCNNSSVFHFLLSALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENS
FQRRRKWDKRIQEFVLQCSGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDW
GQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFI
VSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELSEASSDSEKREKKNLDE
The BLAST search returned 3 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 026782
(233 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:505006392 - symbol:AT3G48425 species:3702 "Ara... 871 3.7e-87 1
GENEDB_PFALCIPARUM|PFC0250c - symbol:PFC0250c "AP endonuc... 377 2.6e-34 1
UNIPROTKB|O97240 - symbol:PFC0250c "AP endonuclease (DNA-... 377 2.6e-34 1
DICTYBASE|DDB_G0277701 - symbol:apeA "DNA-(apurinic or ap... 262 1.3e-22 1
FB|FBgn0004584 - symbol:Rrp1 "Recombination repair protei... 169 1.6e-19 2
MGI|MGI:88042 - symbol:Apex1 "apurinic/apyrimidinic endon... 222 2.2e-18 1
UNIPROTKB|J9PA46 - symbol:APEX1 "Uncharacterized protein"... 221 2.8e-18 1
RGD|2126 - symbol:Apex1 "APEX nuclease (multifunctional D... 221 2.8e-18 1
UNIPROTKB|Q9Z2J2 - symbol:APE "Apurinic/apyrimidinic endo... 220 3.6e-18 1
UNIPROTKB|P27695 - symbol:APEX1 "DNA-(apurinic or apyrimi... 218 5.8e-18 1
UNIPROTKB|A1YFZ3 - symbol:APEX1 "DNA-(apurinic or apyrimi... 218 5.8e-18 1
UNIPROTKB|A2T6Y4 - symbol:APEX1 "DNA-(apurinic or apyrimi... 218 5.8e-18 1
UNIPROTKB|A1YES6 - symbol:APEX1 "DNA-(apurinic or apyrimi... 217 7.5e-18 1
UNIPROTKB|A2T7I6 - symbol:APEX1 "DNA-(apurinic or apyrimi... 217 7.5e-18 1
UNIPROTKB|F1S8H5 - symbol:APEX1 "Uncharacterized protein"... 216 9.5e-18 1
UNIPROTKB|P23196 - symbol:APEX1 "DNA-(apurinic or apyrimi... 212 2.5e-17 1
TIGR_CMR|BA_3868 - symbol:BA_3868 "exodeoxyribonuclease I... 198 7.7e-16 1
UNIPROTKB|G3V3M6 - symbol:APEX1 "DNA-(apurinic or apyrimi... 195 1.6e-15 1
TAIR|locus:2060540 - symbol:ARP "apurinic endonuclease-re... 197 7.9e-15 1
WB|WBGene00001372 - symbol:exo-3 species:6239 "Caenorhabd... 174 4.2e-13 1
ZFIN|ZDB-GENE-040426-2761 - symbol:apex1 "APEX nuclease (... 162 1.4e-11 1
ASPGD|ASPL0000077623 - symbol:AN4736 species:162425 "Emer... 154 5.1e-09 1
TIGR_CMR|CJE_0305 - symbol:CJE_0305 "exodeoxyribonuclease... 140 6.9e-08 1
UNIPROTKB|G3V5Q1 - symbol:APEX1 "DNA-(apurinic or apyrimi... 137 1.3e-07 1
UNIPROTKB|H7C4A8 - symbol:APEX1 "DNA-(apurinic or apyrimi... 116 7.1e-07 1
UNIPROTKB|Q2KFC8 - symbol:MGCH7_ch7g758 "Putative unchara... 134 2.4e-06 1
UNIPROTKB|Q9KQY7 - symbol:VC1860 "Exodeoxyribonuclease II... 121 1.9e-05 1
TIGR_CMR|VC_1860 - symbol:VC_1860 "exodeoxyribonuclease I... 121 1.9e-05 1
MGI|MGI:1924872 - symbol:Apex2 "apurinic/apyrimidinic end... 120 8.7e-05 1
UNIPROTKB|F1M911 - symbol:F1M911 "Uncharacterized protein... 112 0.00011 2
UNIPROTKB|F1M909 - symbol:F1M909 "Uncharacterized protein... 112 0.00013 2
UNIPROTKB|F1M910 - symbol:F1M910 "Uncharacterized protein... 112 0.00013 2
UNIPROTKB|F1RUD3 - symbol:LOC100519003 "Uncharacterized p... 117 0.00020 1
TIGR_CMR|CBU_0297 - symbol:CBU_0297 "exodeoxyribonuclease... 111 0.00029 1
>TAIR|locus:505006392 [details] [associations]
symbol:AT3G48425 species:3702 "Arabidopsis thaliana"
[GO:0004518 "nuclease activity" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0006281 "DNA repair" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=ISS] [GO:0009507 "chloroplast"
evidence=IDA] InterPro:IPR004808 PROSITE:PS51435 Pfam:PF03372
GO:GO:0009507 EMBL:CP002686 GO:GO:0006281 GO:GO:0004527
GO:GO:0090305 GO:GO:0004519 InterPro:IPR005135 SUPFAM:SSF56219
eggNOG:COG0708 PANTHER:PTHR22748 TIGRFAMs:TIGR00633 EMBL:BT015809
EMBL:BT020215 IPI:IPI00532252 RefSeq:NP_566904.2 UniGene:At.50257
ProteinModelPortal:Q5XF07 SMR:Q5XF07 STRING:Q5XF07 PaxDb:Q5XF07
PRIDE:Q5XF07 EnsemblPlants:AT3G48425.1 GeneID:824001
KEGG:ath:AT3G48425 OMA:KWDKRML ProtClustDB:CLSN2680895
Genevestigator:Q5XF07 Uniprot:Q5XF07
Length = 364
Score = 871 (311.7 bits), Expect = 3.7e-87, P = 3.7e-87
Identities = 155/188 (82%), Positives = 174/188 (92%)
Query: 25 ALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGKPLI 84
A K+EPDGRVILAEFETF LLNTY+PNNGWK+EEN+FQRRRKWDKRI EF+ + S KPLI
Sbjct: 159 ASKHEPDGRVILAEFETFRLLNTYSPNNGWKDEENAFQRRRKWDKRIVEFLNKTSDKPLI 218
Query: 85 WCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLID 144
WCGDLNVSHEEIDVSHPEFFA AKLNGYVPPNKED GQPGFT +ER RFGA +KEGRL+D
Sbjct: 219 WCGDLNVSHEEIDVSHPEFFATAKLNGYVPPNKEDCGQPGFTPSERGRFGATIKEGRLVD 278
Query: 145 AYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGF 204
AYR+LHKE++M+ GFSWSGNPIGKYRGKRMRIDYF+VSE+LKDRI++C+M G GIELEGF
Sbjct: 279 AYRYLHKEQEMESGFSWSGNPIGKYRGKRMRIDYFLVSEQLKDRIVSCKMHGRGIELEGF 338
Query: 205 YGSDHCPV 212
+GSDHCPV
Sbjct: 339 HGSDHCPV 346
>GENEDB_PFALCIPARUM|PFC0250c [details] [associations]
symbol:PFC0250c "AP endonuclease (DNA-(apurinic
or apyrimidinic site) lyase), putative" species:5833 "Plasmodium
falciparum" [GO:0003906 "DNA-(apurinic or apyrimidinic site) lyase
activity" evidence=ISS] [GO:0020011 "apicoplast" evidence=ISS]
InterPro:IPR004808 PROSITE:PS51435 Pfam:PF03372 GO:GO:0006281
GO:GO:0090305 GO:GO:0004519 GO:GO:0003906 InterPro:IPR005135
SUPFAM:SSF56219 PANTHER:PTHR22748 TIGRFAMs:TIGR00633 EMBL:AL844502
GO:GO:0020011 HSSP:P27695 RefSeq:XP_001351132.1
ProteinModelPortal:O97240 PRIDE:O97240
EnsemblProtists:PFC0250c:mRNA GeneID:814374 KEGG:pfa:PFC0250c
EuPathDB:PlasmoDB:PF3D7_0305600 KO:K01741 ProtClustDB:CLSZ2431892
Uniprot:O97240
Length = 617
Score = 377 (137.8 bits), Expect = 2.6e-34, P = 2.6e-34
Identities = 91/204 (44%), Positives = 122/204 (59%)
Query: 28 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG---KPLI 84
+ +GRVIL EF F+LL+TY PNNG+ + F+RRR +D+++Q+FV KPL+
Sbjct: 413 HHDEGRVILVEFSNFFLLSTYTPNNGF--DHVKFERRRLFDEQLQKFVTILRNEKQKPLV 470
Query: 85 WCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLID 144
W GDLN++ E+ID+SHP F K G VP KE GQPG T ERK F IL G L+D
Sbjct: 471 WTGDLNIAPEDIDLSHPAEFRRMK-KGNVP--KEFIGQPGCTDFERKNFQKILTAGNLVD 527
Query: 145 AYRFLH-------KEKDM-------DCGFSWSGNP--IGKYRGKRMRIDYFIVSEELKDR 188
+YR+L K+ ++ D ++W P +GK K MRID+FIVS+E +R
Sbjct: 528 SYRYLQNIKLNEDKKNNIKHTPNINDNIYTWRC-PFLLGKSCNKAMRIDHFIVSKEFLNR 586
Query: 189 IIACEMQGHGIELEGFYGSDHCPV 212
I +QG + FYGSDHCPV
Sbjct: 587 INKIHIQGFSVFHNNFYGSDHCPV 610
>UNIPROTKB|O97240 [details] [associations]
symbol:PFC0250c "AP endonuclease (DNA-[apurinic or
apyrimidinic site] lyase), putative" species:36329 "Plasmodium
falciparum 3D7" [GO:0003906 "DNA-(apurinic or apyrimidinic site)
lyase activity" evidence=ISS] [GO:0020011 "apicoplast"
evidence=ISS] InterPro:IPR004808 PROSITE:PS51435 Pfam:PF03372
GO:GO:0006281 GO:GO:0090305 GO:GO:0004519 GO:GO:0003906
InterPro:IPR005135 SUPFAM:SSF56219 PANTHER:PTHR22748
TIGRFAMs:TIGR00633 EMBL:AL844502 GO:GO:0020011 HSSP:P27695
RefSeq:XP_001351132.1 ProteinModelPortal:O97240 PRIDE:O97240
EnsemblProtists:PFC0250c:mRNA GeneID:814374 KEGG:pfa:PFC0250c
EuPathDB:PlasmoDB:PF3D7_0305600 KO:K01741 ProtClustDB:CLSZ2431892
Uniprot:O97240
Length = 617
Score = 377 (137.8 bits), Expect = 2.6e-34, P = 2.6e-34
Identities = 91/204 (44%), Positives = 122/204 (59%)
Query: 28 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG---KPLI 84
+ +GRVIL EF F+LL+TY PNNG+ + F+RRR +D+++Q+FV KPL+
Sbjct: 413 HHDEGRVILVEFSNFFLLSTYTPNNGF--DHVKFERRRLFDEQLQKFVTILRNEKQKPLV 470
Query: 85 WCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLID 144
W GDLN++ E+ID+SHP F K G VP KE GQPG T ERK F IL G L+D
Sbjct: 471 WTGDLNIAPEDIDLSHPAEFRRMK-KGNVP--KEFIGQPGCTDFERKNFQKILTAGNLVD 527
Query: 145 AYRFLH-------KEKDM-------DCGFSWSGNP--IGKYRGKRMRIDYFIVSEELKDR 188
+YR+L K+ ++ D ++W P +GK K MRID+FIVS+E +R
Sbjct: 528 SYRYLQNIKLNEDKKNNIKHTPNINDNIYTWRC-PFLLGKSCNKAMRIDHFIVSKEFLNR 586
Query: 189 IIACEMQGHGIELEGFYGSDHCPV 212
I +QG + FYGSDHCPV
Sbjct: 587 INKIHIQGFSVFHNNFYGSDHCPV 610
>DICTYBASE|DDB_G0277701 [details] [associations]
symbol:apeA "DNA-(apurinic or apyrimidinic site)
lyase" species:44689 "Dictyostelium discoideum" [GO:0016889
"endodeoxyribonuclease activity, producing 3'-phosphomonoesters"
evidence=TAS] [GO:0006284 "base-excision repair" evidence=TAS]
[GO:0090305 "nucleic acid phosphodiester bond hydrolysis"
evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA] [GO:0005622
"intracellular" evidence=IEA] [GO:0004519 "endonuclease activity"
evidence=IEA] [GO:0004518 "nuclease activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003906 "DNA-(apurinic
or apyrimidinic site) lyase activity" evidence=IEA] [GO:0046872
"metal ion binding" evidence=IEA] [GO:0016829 "lyase activity"
evidence=IEA] [GO:0006974 "response to DNA damage stimulus"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR004808 InterPro:IPR020847 InterPro:IPR020848
PROSITE:PS00726 PROSITE:PS00727 PROSITE:PS00728 PROSITE:PS51435
dictyBase:DDB_G0277701 Pfam:PF03372 GO:GO:0005634 GO:GO:0046872
GO:GO:0006284 GO:GO:0003677 GenomeReviews:CM000151_GR GO:GO:0003906
InterPro:IPR005135 SUPFAM:SSF56219 EMBL:U31631 EMBL:AAFI02000021
PIR:S68268 RefSeq:XP_642518.1 ProteinModelPortal:P51173
STRING:P51173 EnsemblProtists:DDB0185018 GeneID:8621167
KEGG:ddi:DDB_G0277701 eggNOG:COG0708 KO:K10771 OMA:GIRACLK
ProtClustDB:CLSZ2453462 GO:GO:0016889 PANTHER:PTHR22748
TIGRFAMs:TIGR00633 Uniprot:P51173
Length = 361
Score = 262 (97.3 bits), Expect = 1.3e-22, P = 1.3e-22
Identities = 62/170 (36%), Positives = 95/170 (55%)
Query: 21 FLLSALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG 80
F + K++ +GRVI E++ FY++NTY PN G + + R ++WD Q ++ + +
Sbjct: 184 FGIGIAKHDNEGRVITLEYDQFYIVNTYIPNAGTRGLQRLDYRIKEWDVDFQAYLEKLNA 243
Query: 81 -KPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKE 139
KP+IWCGDLNV+H EID+ +P+ NK+ GFTI ER F L++
Sbjct: 244 TKPIIWCGDLNVAHTEIDLKNPK------------TNKKS---AGFTIEERTSFSNFLEK 288
Query: 140 GRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRI 189
G +D+YR + K+ F WS G+ + R+DYF+VS+ L D I
Sbjct: 289 G-YVDSYRHFNPGKEGSYTF-WSYLGGGRSKNVGWRLDYFVVSKRLMDSI 336
Score = 124 (48.7 bits), Expect = 1.6e-05, P = 1.6e-05
Identities = 32/89 (35%), Positives = 45/89 (50%)
Query: 124 GFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSE 183
GFTI ER F L++G +D+YR + K+ F WS G+ + R+DYF+VS+
Sbjct: 273 GFTIEERTSFSNFLEKG-YVDSYRHFNPGKEGSYTF-WSYLGGGRSKNVGWRLDYFVVSK 330
Query: 184 ELKDRIIACEMQGHGIELEGFYGSDHCPV 212
L D I + GSDHCP+
Sbjct: 331 RLMDSIKISPFHRTSV-----MGSDHCPI 354
>FB|FBgn0004584 [details] [associations]
symbol:Rrp1 "Recombination repair protein 1" species:7227
"Drosophila melanogaster" [GO:0006281 "DNA repair" evidence=ISS]
[GO:0003906 "DNA-(apurinic or apyrimidinic site) lyase activity"
evidence=ISS;IDA] [GO:0005634 "nucleus" evidence=NAS] [GO:0008311
"double-stranded DNA specific 3'-5' exodeoxyribonuclease activity"
evidence=NAS] [GO:0004519 "endonuclease activity" evidence=IEA]
[GO:0005622 "intracellular" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0008408 "3'-5' exonuclease activity"
evidence=IDA] [GO:0006974 "response to DNA damage stimulus"
evidence=IMP] InterPro:IPR004808 InterPro:IPR020847
InterPro:IPR020848 PROSITE:PS00726 PROSITE:PS00727 PROSITE:PS00728
PROSITE:PS51435 Pfam:PF03372 GO:GO:0005634 EMBL:AE014134
GO:GO:0046872 GO:GO:0003677 GO:GO:0006281 GO:GO:0006974
GO:GO:0004519 GO:GO:0003906 InterPro:IPR005135 SUPFAM:SSF56219
eggNOG:COG0708 KO:K10771 PANTHER:PTHR22748 TIGRFAMs:TIGR00633
GeneTree:ENSGT00530000063540 GO:GO:0008408 ChiTaRS:RRP1 EMBL:M62472
EMBL:AF073994 EMBL:AY118605 PIR:S28366 RefSeq:NP_476841.1
UniGene:Dm.280 ProteinModelPortal:P27864 SMR:P27864 STRING:P27864
PaxDb:P27864 PRIDE:P27864 EnsemblMetazoa:FBtr0077678 GeneID:33500
KEGG:dme:Dmel_CG3178 CTD:8568 FlyBase:FBgn0004584 InParanoid:P27864
OrthoDB:EOG4NK9B8 GenomeRNAi:33500 NextBio:783912 Bgee:P27864
GermOnline:CG3178 Uniprot:P27864
Length = 679
Score = 169 (64.5 bits), Expect = 1.6e-19, Sum P(2) = 1.6e-19
Identities = 32/77 (41%), Positives = 51/77 (66%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIW 85
+++ GR+I AE+E FYL+N Y PN+G K + + R +W+K Q +V + KP++
Sbjct: 512 EFDDVGRMITAEYEKFYLINVYVPNSGRKLV--NLEPRMRWEKLFQAYVKKLDALKPVVI 569
Query: 86 CGDLNVSHEEIDVSHPE 102
CGD+NVSH ID+ +P+
Sbjct: 570 CGDMNVSHMPIDLENPK 586
Score = 99 (39.9 bits), Expect = 1.6e-19, Sum P(2) = 1.6e-19
Identities = 27/96 (28%), Positives = 46/96 (47%)
Query: 117 KEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRI 176
K + GFT ER + +L G +D +R L+ ++ F W+ + R R+
Sbjct: 586 KNNTKNAGFTQEERDKMTELLGLG-FVDTFRHLYPDRKGAYTF-WTYMANARARNVGWRL 643
Query: 177 DYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPV 212
DY +VSE +++ E++ + GSDHCP+
Sbjct: 644 DYCLVSERFVPKVVEHEIRSQCL------GSDHCPI 673
>MGI|MGI:88042 [details] [associations]
symbol:Apex1 "apurinic/apyrimidinic endonuclease 1"
species:10090 "Mus musculus" [GO:0003677 "DNA binding"
evidence=ISO] [GO:0003684 "damaged DNA binding" evidence=ISO]
[GO:0003713 "transcription coactivator activity" evidence=ISO]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0003906 "DNA-(apurinic
or apyrimidinic site) lyase activity" evidence=ISO] [GO:0004518
"nuclease activity" evidence=IEA] [GO:0004519 "endonuclease
activity" evidence=IEA] [GO:0004521 "endoribonuclease activity"
evidence=ISO] [GO:0004527 "exonuclease activity" evidence=IEA]
[GO:0005622 "intracellular" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISO;IDA] [GO:0005654 "nucleoplasm" evidence=ISO]
[GO:0005667 "transcription factor complex" evidence=ISO]
[GO:0005730 "nucleolus" evidence=ISO] [GO:0005737 "cytoplasm"
evidence=ISO;IDA] [GO:0005739 "mitochondrion" evidence=ISO]
[GO:0005783 "endoplasmic reticulum" evidence=IEA] [GO:0006281 "DNA
repair" evidence=ISO] [GO:0006310 "DNA recombination" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0006974 "response to DNA damage stimulus"
evidence=IEA] [GO:0007568 "aging" evidence=ISO] [GO:0008408 "3'-5'
exonuclease activity" evidence=ISO] [GO:0014912 "negative
regulation of smooth muscle cell migration" evidence=ISO]
[GO:0016491 "oxidoreductase activity" evidence=ISO] [GO:0016607
"nuclear speck" evidence=ISO] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0016829 "lyase activity" evidence=IEA]
[GO:0016890 "site-specific endodeoxyribonuclease activity, specific
for altered base" evidence=ISO] [GO:0031490 "chromatin DNA binding"
evidence=ISO] [GO:0032403 "protein complex binding" evidence=ISO]
[GO:0043488 "regulation of mRNA stability" evidence=ISO]
[GO:0045454 "cell redox homeostasis" evidence=IDA] [GO:0045739
"positive regulation of DNA repair" evidence=ISO] [GO:0045750
"positive regulation of S phase of mitotic cell cycle"
evidence=ISO] [GO:0046872 "metal ion binding" evidence=ISO]
[GO:0048471 "perinuclear region of cytoplasm" evidence=ISO]
[GO:0051059 "NF-kappaB binding" evidence=ISO] [GO:0055114
"oxidation-reduction process" evidence=ISO] [GO:0070301 "cellular
response to hydrogen peroxide" evidence=ISO] [GO:0080111 "DNA
demethylation" evidence=ISO] InterPro:IPR004808 InterPro:IPR020847
InterPro:IPR020848 PROSITE:PS00726 PROSITE:PS00727 PROSITE:PS00728
PROSITE:PS51435 Pfam:PF03372 MGI:MGI:88042 GO:GO:0005783
GO:GO:0005739 GO:GO:0005813 GO:GO:0048471 GO:GO:0005730
GO:GO:0006355 GO:GO:0046872 GO:GO:0003684 GO:GO:0016607
GO:GO:0006281 GO:GO:0016491 GO:GO:0006351 GO:GO:0080111
GO:GO:0003723 GO:GO:0003713 GO:GO:0006310 GO:GO:0045454
GO:GO:0003906 InterPro:IPR005135 SUPFAM:SSF56219 GO:GO:0045739
eggNOG:COG0708 KO:K10771 PANTHER:PTHR22748 TIGRFAMs:TIGR00633
CTD:328 HOGENOM:HOG000034586 HOVERGEN:HBG050531 GO:GO:0008408
GO:GO:0031490 GO:GO:0008081 GO:GO:0016890 GO:GO:0043488 OMA:TAYAYTF
EMBL:D90374 EMBL:U12273 EMBL:D38077 EMBL:BC052401 IPI:IPI00224152
PIR:A39500 RefSeq:NP_033817.1 UniGene:Mm.203
ProteinModelPortal:P28352 SMR:P28352 STRING:P28352
PhosphoSite:P28352 PaxDb:P28352 PRIDE:P28352
Ensembl:ENSMUST00000049411 GeneID:11792 KEGG:mmu:11792
InParanoid:P28352 NextBio:279621 Bgee:P28352 CleanEx:MM_APEX1
Genevestigator:P28352 GermOnline:ENSMUSG00000035960 Uniprot:P28352
Length = 317
Score = 222 (83.2 bits), Expect = 2.2e-18, P = 2.2e-18
Identities = 57/160 (35%), Positives = 90/160 (56%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQ-CSGKPLIW 85
+++ +GRVI+AEFE+F L+ Y PN G + R++WD+ ++F+ S KPL+
Sbjct: 149 EHDQEGRVIVAEFESFVLVTAYVPNAG--RGLVRLEYRQRWDEAFRKFLKDLASRKPLVL 206
Query: 86 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 145
CGDLNV+HEEID+ +P+ G NK++ GFT ER+ FG +L+ L D+
Sbjct: 207 CGDLNVAHEEIDLRNPK--------G----NKKN---AGFTPQERQGFGELLQAVPLADS 251
Query: 146 YRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEEL 185
+R L+ F W+ + + R+DYF++S L
Sbjct: 252 FRHLYPNTAYAYTF-WTYMMNARSKNVGWRLDYFLLSHSL 290
>UNIPROTKB|J9PA46 [details] [associations]
symbol:APEX1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006281 "DNA repair" evidence=IEA]
[GO:0005622 "intracellular" evidence=IEA] [GO:0004519 "endonuclease
activity" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR004808 InterPro:IPR020847 InterPro:IPR020848
PROSITE:PS00726 PROSITE:PS00727 PROSITE:PS00728 PROSITE:PS51435
Pfam:PF03372 GO:GO:0003677 GO:GO:0006281 GO:GO:0005622
GO:GO:0090305 GO:GO:0004519 InterPro:IPR005135 SUPFAM:SSF56219
KO:K10771 PANTHER:PTHR22748 TIGRFAMs:TIGR00633 CTD:328
GeneTree:ENSGT00530000063540 OMA:TAYAYTF EMBL:AAEX03009834
RefSeq:NP_001138591.1 ProteinModelPortal:J9PA46
Ensembl:ENSCAFT00000048382 GeneID:482558 KEGG:cfa:482558
Uniprot:J9PA46
Length = 318
Score = 221 (82.9 bits), Expect = 2.8e-18, P = 2.8e-18
Identities = 57/160 (35%), Positives = 90/160 (56%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQ-CSGKPLIW 85
+++ +GRVI+AEF+TF L+ Y PN G + R++WD+ ++F+ S KPL+
Sbjct: 150 EHDQEGRVIVAEFDTFVLVTAYVPNAG--RGLVRLEYRQRWDEAFRKFLKGLASRKPLVL 207
Query: 86 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 145
CGDLNV+HEEID+ +P+ G NK++ GFT ER+ FG +L+ L D+
Sbjct: 208 CGDLNVAHEEIDLRNPK--------G----NKKN---AGFTPQERQGFGELLQAVPLADS 252
Query: 146 YRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEEL 185
+R L+ F W+ + + R+DYF++S L
Sbjct: 253 FRHLYPNTAYAYTF-WTYMMNARSKNVGWRLDYFLLSHSL 291
>RGD|2126 [details] [associations]
symbol:Apex1 "APEX nuclease (multifunctional DNA repair enzyme) 1"
species:10116 "Rattus norvegicus" [GO:0003677 "DNA binding"
evidence=ISO;ISS] [GO:0003684 "damaged DNA binding" evidence=ISO;ISS]
[GO:0003713 "transcription coactivator activity" evidence=ISO;ISS]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0003906 "DNA-(apurinic or
apyrimidinic site) lyase activity" evidence=ISO;ISS] [GO:0004519
"endonuclease activity" evidence=ISO] [GO:0004521 "endoribonuclease
activity" evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005634 "nucleus" evidence=ISO;ISS;IDA] [GO:0005654 "nucleoplasm"
evidence=ISO] [GO:0005667 "transcription factor complex"
evidence=IDA] [GO:0005730 "nucleolus" evidence=ISO;ISS] [GO:0005737
"cytoplasm" evidence=ISO;IDA] [GO:0005739 "mitochondrion"
evidence=ISO;IDA] [GO:0005783 "endoplasmic reticulum" evidence=IEA]
[GO:0005813 "centrosome" evidence=IEA;ISO] [GO:0006281 "DNA repair"
evidence=ISO;ISS] [GO:0006310 "DNA recombination" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0007568 "aging" evidence=IDA] [GO:0008081 "phosphoric diester
hydrolase activity" evidence=IEA;ISO] [GO:0008408 "3'-5' exonuclease
activity" evidence=ISO;ISS] [GO:0010243 "response to organic
nitrogen" evidence=IEP] [GO:0014912 "negative regulation of smooth
muscle cell migration" evidence=IMP] [GO:0016491 "oxidoreductase
activity" evidence=ISO;ISS] [GO:0016607 "nuclear speck"
evidence=ISO;ISS] [GO:0016890 "site-specific endodeoxyribonuclease
activity, specific for altered base" evidence=ISO;ISS] [GO:0031490
"chromatin DNA binding" evidence=ISO;ISS] [GO:0032403 "protein
complex binding" evidence=IPI] [GO:0042493 "response to drug"
evidence=IEP] [GO:0043488 "regulation of mRNA stability"
evidence=ISO;ISS] [GO:0045454 "cell redox homeostasis"
evidence=IEA;ISO] [GO:0045739 "positive regulation of DNA repair"
evidence=ISO;ISS] [GO:0045750 "positive regulation of S phase of
mitotic cell cycle" evidence=IMP] [GO:0046872 "metal ion binding"
evidence=ISO;ISS] [GO:0048471 "perinuclear region of cytoplasm"
evidence=ISO;ISS] [GO:0051059 "NF-kappaB binding" evidence=IDA]
[GO:0055114 "oxidation-reduction process" evidence=ISO] [GO:0070301
"cellular response to hydrogen peroxide" evidence=IEP;IDA]
[GO:0071320 "cellular response to cAMP" evidence=IEP] [GO:0071375
"cellular response to peptide hormone stimulus" evidence=IEP]
[GO:0071417 "cellular response to organic nitrogen" evidence=IEP]
[GO:0080111 "DNA demethylation" evidence=ISO;ISS] InterPro:IPR004808
InterPro:IPR020847 InterPro:IPR020848 PROSITE:PS00726 PROSITE:PS00727
PROSITE:PS00728 PROSITE:PS51435 Pfam:PF03372 RGD:2126 GO:GO:0005783
GO:GO:0005739 GO:GO:0048471 GO:GO:0005730 GO:GO:0006355 GO:GO:0071320
GO:GO:0070301 GO:GO:0042493 GO:GO:0046872 GO:GO:0003684 GO:GO:0016607
GO:GO:0007568 GO:GO:0006281 GO:GO:0016491 GO:GO:0006351 GO:GO:0080111
GO:GO:0003723 GO:GO:0005667 GO:GO:0003713 GO:GO:0006310 GO:GO:0014912
GO:GO:0004521 GO:GO:0003906 InterPro:IPR005135 SUPFAM:SSF56219
GO:GO:0045739 eggNOG:COG0708 KO:K10771 PANTHER:PTHR22748
TIGRFAMs:TIGR00633 CTD:328 GeneTree:ENSGT00530000063540
HOGENOM:HOG000034586 HOVERGEN:HBG050531 OrthoDB:EOG44J2JD
GO:GO:0008408 GO:GO:0031490 GO:GO:0016890 GO:GO:0043488 OMA:TAYAYTF
EMBL:L27076 EMBL:AB023065 EMBL:D44495 EMBL:AF309114 EMBL:BC078816
IPI:IPI00231964 PIR:S42397 RefSeq:NP_077062.1 UniGene:Rn.5949
ProteinModelPortal:P43138 SMR:P43138 STRING:P43138 PhosphoSite:P43138
PRIDE:P43138 Ensembl:ENSRNOT00000013176 GeneID:79116 KEGG:rno:79116
UCSC:RGD:2126 InParanoid:P43138 NextBio:614526 ArrayExpress:P43138
Genevestigator:P43138 GermOnline:ENSRNOG00000009663 GO:GO:0051059
GO:GO:0071375 GO:GO:0045750 Uniprot:P43138
Length = 317
Score = 221 (82.9 bits), Expect = 2.8e-18, P = 2.8e-18
Identities = 57/160 (35%), Positives = 90/160 (56%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQ-CSGKPLIW 85
+++ +GRVI+AEFE+F L+ Y PN G + R++WD+ ++F+ S KPL+
Sbjct: 149 EHDQEGRVIVAEFESFILVTAYVPNAG--RGLVRLEYRQRWDEAFRKFLKDLASRKPLVL 206
Query: 86 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 145
CGDLNV+HEEID+ +P+ G NK++ GFT ER+ FG +L+ L D+
Sbjct: 207 CGDLNVAHEEIDLRNPK--------G----NKKN---AGFTPQERQGFGEMLQAVPLADS 251
Query: 146 YRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEEL 185
+R L+ F W+ + + R+DYF++S L
Sbjct: 252 FRHLYPNTAYAYTF-WTYMMNARSKNVGWRLDYFLLSHSL 290
>UNIPROTKB|Q9Z2J2 [details] [associations]
symbol:APE "Apurinic/apyrimidinic endonuclease"
species:10029 "Cricetulus griseus" [GO:0003677 "DNA binding"
evidence=ISS] [GO:0003713 "transcription coactivator activity"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0016491
"oxidoreductase activity" evidence=ISS] [GO:0046872 "metal ion
binding" evidence=ISS] [GO:0048471 "perinuclear region of
cytoplasm" evidence=ISS] [GO:0055114 "oxidation-reduction process"
evidence=ISS] InterPro:IPR004808 InterPro:IPR020847
InterPro:IPR020848 PROSITE:PS00726 PROSITE:PS00727 PROSITE:PS00728
PROSITE:PS51435 Pfam:PF03372 GO:GO:0005634 GO:GO:0048471
GO:GO:0046872 GO:GO:0003677 GO:GO:0006281 GO:GO:0016491
GO:GO:0003713 GO:GO:0090305 GO:GO:0004519 InterPro:IPR005135
SUPFAM:SSF56219 GO:GO:0016829 PANTHER:PTHR22748 TIGRFAMs:TIGR00633
CTD:328 HOVERGEN:HBG050531 HSSP:P27695 EMBL:AF056934 EMBL:JH001089
RefSeq:NP_001231340.1 ProteinModelPortal:Q9Z2J2 SMR:Q9Z2J2
GeneID:100689281 Uniprot:Q9Z2J2
Length = 317
Score = 220 (82.5 bits), Expect = 3.6e-18, P = 3.6e-18
Identities = 57/160 (35%), Positives = 89/160 (55%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQ-CSGKPLIW 85
+++ +GRVI+AEF++F L+ Y PN G + R++WDK +F+ S KPL+
Sbjct: 149 EHDQEGRVIVAEFDSFVLVTAYVPNAG--RGLVRLEYRQRWDKAFCKFLKDLASRKPLVL 206
Query: 86 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 145
CGDLNV+HEEID+ +P+ G NK++ GFT ER+ FG +L+ L D+
Sbjct: 207 CGDLNVAHEEIDLRNPK--------G----NKKN---AGFTPQERQGFGELLQAVPLTDS 251
Query: 146 YRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEEL 185
+R L+ F W+ + + R+DYF++S L
Sbjct: 252 FRHLYPNTPYAYTF-WTYMMNARAKNVGWRLDYFLLSHSL 290
>UNIPROTKB|P27695 [details] [associations]
symbol:APEX1 "DNA-(apurinic or apyrimidinic site) lyase"
species:9606 "Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0006310 "DNA recombination" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0005667 "transcription factor complex" evidence=IEA]
[GO:0007568 "aging" evidence=IEA] [GO:0014912 "negative regulation
of smooth muscle cell migration" evidence=IEA] [GO:0032403 "protein
complex binding" evidence=IEA] [GO:0042493 "response to drug"
evidence=IEA] [GO:0045454 "cell redox homeostasis" evidence=IEA]
[GO:0045750 "positive regulation of S phase of mitotic cell cycle"
evidence=IEA] [GO:0051059 "NF-kappaB binding" evidence=IEA]
[GO:0070301 "cellular response to hydrogen peroxide" evidence=IEA]
[GO:0071320 "cellular response to cAMP" evidence=IEA] [GO:0071375
"cellular response to peptide hormone stimulus" evidence=IEA]
[GO:0003906 "DNA-(apurinic or apyrimidinic site) lyase activity"
evidence=IDA;TAS] [GO:0003713 "transcription coactivator activity"
evidence=IDA] [GO:0008408 "3'-5' exonuclease activity"
evidence=IDA;TAS] [GO:0005634 "nucleus" evidence=IDA] [GO:0004528
"phosphodiesterase I activity" evidence=TAS] [GO:0005840 "ribosome"
evidence=TAS] [GO:0005783 "endoplasmic reticulum" evidence=TAS]
[GO:0004523 "ribonuclease H activity" evidence=TAS] [GO:0003677
"DNA binding" evidence=IDA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0048471 "perinuclear region of cytoplasm"
evidence=IDA] [GO:0016491 "oxidoreductase activity" evidence=IDA]
[GO:0046872 "metal ion binding" evidence=IDA] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0043488 "regulation of mRNA
stability" evidence=IMP] [GO:0045739 "positive regulation of DNA
repair" evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
[GO:0005654 "nucleoplasm" evidence=IDA;TAS] [GO:0016607 "nuclear
speck" evidence=IDA] [GO:0003684 "damaged DNA binding"
evidence=IDA] [GO:0031490 "chromatin DNA binding" evidence=IDA]
[GO:0005739 "mitochondrion" evidence=IDA] [GO:0006281 "DNA repair"
evidence=IDA;TAS] [GO:0016890 "site-specific endodeoxyribonuclease
activity, specific for altered base" evidence=IDA] [GO:0080111 "DNA
demethylation" evidence=IDA] [GO:0003714 "transcription corepressor
activity" evidence=TAS] [GO:0004520 "endodeoxyribonuclease
activity" evidence=TAS] [GO:0004844 "uracil DNA N-glycosylase
activity" evidence=TAS] [GO:0004519 "endonuclease activity"
evidence=IDA] [GO:0008081 "phosphoric diester hydrolase activity"
evidence=IDA] [GO:0006284 "base-excision repair" evidence=TAS]
[GO:0055114 "oxidation-reduction process" evidence=IDA] [GO:0005813
"centrosome" evidence=IDA] Reactome:REACT_216 InterPro:IPR004808
InterPro:IPR020847 InterPro:IPR020848 PROSITE:PS00726
PROSITE:PS00727 PROSITE:PS00728 PROSITE:PS51435 EMBL:AF488551
EMBL:U79268 Pfam:PF03372 GO:GO:0005783 GO:GO:0005739 GO:GO:0005813
GO:GO:0048471 GO:GO:0003714 GO:GO:0005730 GO:GO:0006355
GO:GO:0046872 GO:GO:0006284 GO:GO:0003684 GO:GO:0016607
GO:GO:0016491 GO:GO:0006351 GO:GO:0080111 GO:GO:0003723
GO:GO:0005840 GO:GO:0003713 GO:GO:0006310 GO:GO:0045454
GO:GO:0003906 InterPro:IPR005135 SUPFAM:SSF56219 GO:GO:0045739
eggNOG:COG0708 KO:K10771 PANTHER:PTHR22748 TIGRFAMs:TIGR00633
CTD:328 HOGENOM:HOG000034586 HOVERGEN:HBG050531 OrthoDB:EOG44J2JD
BRENDA:4.2.99.18 GO:GO:0008408 GO:GO:0031490 GO:GO:0016890
GO:GO:0043488 EMBL:X59764 EMBL:M80261 EMBL:D90373 EMBL:S43127
EMBL:M81955 EMBL:M92444 EMBL:X66133 EMBL:D13370 EMBL:BT007236
EMBL:AL355075 EMBL:BC002338 EMBL:BC004979 EMBL:BC008145
EMBL:BC019291 EMBL:M99703 IPI:IPI00215911 PIR:S23550
RefSeq:NP_001231178.1 RefSeq:NP_001632.2 RefSeq:NP_542379.1
RefSeq:NP_542380.1 UniGene:Hs.73722 PDB:1BIX PDB:1CQG PDB:1CQH
PDB:1DE8 PDB:1DE9 PDB:1DEW PDB:1E9N PDB:1HD7 PDB:2ISI PDB:2O3H
PDB:3U8U PDBsum:1BIX PDBsum:1CQG PDBsum:1CQH PDBsum:1DE8
PDBsum:1DE9 PDBsum:1DEW PDBsum:1E9N PDBsum:1HD7 PDBsum:2ISI
PDBsum:2O3H PDBsum:3U8U DisProt:DP00007 ProteinModelPortal:P27695
SMR:P27695 DIP:DIP-6130N IntAct:P27695 MINT:MINT-119189
STRING:P27695 PhosphoSite:P27695 DMDM:113984 PaxDb:P27695
PeptideAtlas:P27695 PRIDE:P27695 DNASU:328 Ensembl:ENST00000216714
Ensembl:ENST00000398030 Ensembl:ENST00000555414
Ensembl:ENST00000557344 GeneID:328 KEGG:hsa:328 UCSC:uc001vxg.3
GeneCards:GC14P020924 HGNC:HGNC:587 HPA:CAB004294 HPA:CAB047307
HPA:HPA002564 MIM:107748 neXtProt:NX_P27695 PharmGKB:PA201059
InParanoid:P27695 OMA:TAYAYTF PhylomeDB:P27695 BindingDB:P27695
ChEMBL:CHEMBL5619 ChiTaRS:APEX1 DrugBank:DB04967
EvolutionaryTrace:P27695 GenomeRNAi:328 NextBio:1347
PMAP-CutDB:P27695 ArrayExpress:P27695 Bgee:P27695 CleanEx:HS_APEX1
CleanEx:HS_HAP1 Genevestigator:P27695 GermOnline:ENSG00000100823
GO:GO:0004528 GO:GO:0004523 GO:GO:0004844 Uniprot:P27695
Length = 318
Score = 218 (81.8 bits), Expect = 5.8e-18, P = 5.8e-18
Identities = 56/160 (35%), Positives = 90/160 (56%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQ-CSGKPLIW 85
+++ +GRVI+AEF++F L+ Y PN G + R++WD+ ++F+ S KPL+
Sbjct: 150 EHDQEGRVIVAEFDSFVLVTAYVPNAG--RGLVRLEYRQRWDEAFRKFLKGLASRKPLVL 207
Query: 86 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 145
CGDLNV+HEEID+ +P+ G NK++ GFT ER+ FG +L+ L D+
Sbjct: 208 CGDLNVAHEEIDLRNPK--------G----NKKN---AGFTPQERQGFGELLQAVPLADS 252
Query: 146 YRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEEL 185
+R L+ F W+ + + R+DYF++S L
Sbjct: 253 FRHLYPNTPYAYTF-WTYMMNARSKNVGWRLDYFLLSHSL 291
>UNIPROTKB|A1YFZ3 [details] [associations]
symbol:APEX1 "DNA-(apurinic or apyrimidinic site) lyase"
species:9597 "Pan paniscus" [GO:0003684 "damaged DNA binding"
evidence=ISS] [GO:0003906 "DNA-(apurinic or apyrimidinic site)
lyase activity" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
[GO:0005654 "nucleoplasm" evidence=ISS] [GO:0005730 "nucleolus"
evidence=ISS] [GO:0005737 "cytoplasm" evidence=ISS] [GO:0005739
"mitochondrion" evidence=ISS] [GO:0006281 "DNA repair"
evidence=ISS] [GO:0008408 "3'-5' exonuclease activity"
evidence=ISS] [GO:0016491 "oxidoreductase activity" evidence=ISS]
[GO:0016607 "nuclear speck" evidence=ISS] [GO:0016890
"site-specific endodeoxyribonuclease activity, specific for altered
base" evidence=ISS] [GO:0031490 "chromatin DNA binding"
evidence=ISS] [GO:0043488 "regulation of mRNA stability"
evidence=ISS] [GO:0045739 "positive regulation of DNA repair"
evidence=ISS] [GO:0055114 "oxidation-reduction process"
evidence=ISS] [GO:0080111 "DNA demethylation" evidence=ISS]
InterPro:IPR004808 InterPro:IPR020847 InterPro:IPR020848
PROSITE:PS00726 PROSITE:PS00727 PROSITE:PS00728 PROSITE:PS51435
Pfam:PF03372 GO:GO:0005783 GO:GO:0005739 GO:GO:0005730
GO:GO:0006355 GO:GO:0046872 GO:GO:0003684 GO:GO:0016607
GO:GO:0006281 GO:GO:0016491 GO:GO:0006351 GO:GO:0080111
GO:GO:0003723 GO:GO:0006310 GO:GO:0003906 InterPro:IPR005135
SUPFAM:SSF56219 GO:GO:0045739 KO:K10771 PANTHER:PTHR22748
TIGRFAMs:TIGR00633 CTD:328 HOVERGEN:HBG050531 GO:GO:0008408
GO:GO:0031490 GO:GO:0016890 GO:GO:0043488 EMBL:DQ977185
RefSeq:XP_003811777.1 RefSeq:XP_003811778.1 RefSeq:XP_003811779.1
ProteinModelPortal:A1YFZ3 SMR:A1YFZ3 GeneID:100987860
KEGG:pps:100987860 Uniprot:A1YFZ3
Length = 318
Score = 218 (81.8 bits), Expect = 5.8e-18, P = 5.8e-18
Identities = 56/160 (35%), Positives = 90/160 (56%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQ-CSGKPLIW 85
+++ +GRVI+AEF++F L+ Y PN G + R++WD+ ++F+ S KPL+
Sbjct: 150 EHDQEGRVIVAEFDSFVLVTAYVPNAG--RGLVRLEYRQRWDEAFRKFLKGLASRKPLVL 207
Query: 86 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 145
CGDLNV+HEEID+ +P+ G NK++ GFT ER+ FG +L+ L D+
Sbjct: 208 CGDLNVAHEEIDLRNPK--------G----NKKN---AGFTPQERQGFGELLQAVPLADS 252
Query: 146 YRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEEL 185
+R L+ F W+ + + R+DYF++S L
Sbjct: 253 FRHLYPNTPYAYTF-WTYMMNARSKNVGWRLDYFLLSHSL 291
>UNIPROTKB|A2T6Y4 [details] [associations]
symbol:APEX1 "DNA-(apurinic or apyrimidinic site) lyase"
species:9598 "Pan troglodytes" [GO:0003684 "damaged DNA binding"
evidence=ISS] [GO:0003906 "DNA-(apurinic or apyrimidinic site)
lyase activity" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
[GO:0005654 "nucleoplasm" evidence=ISS] [GO:0005730 "nucleolus"
evidence=ISS] [GO:0005737 "cytoplasm" evidence=ISS] [GO:0005739
"mitochondrion" evidence=ISS] [GO:0006281 "DNA repair"
evidence=ISS] [GO:0008408 "3'-5' exonuclease activity"
evidence=ISS] [GO:0016491 "oxidoreductase activity" evidence=ISS]
[GO:0016607 "nuclear speck" evidence=ISS] [GO:0016890
"site-specific endodeoxyribonuclease activity, specific for altered
base" evidence=ISS] [GO:0031490 "chromatin DNA binding"
evidence=ISS] [GO:0043488 "regulation of mRNA stability"
evidence=ISS] [GO:0045739 "positive regulation of DNA repair"
evidence=ISS] [GO:0080111 "DNA demethylation" evidence=ISS]
InterPro:IPR004808 InterPro:IPR020847 InterPro:IPR020848
PROSITE:PS00726 PROSITE:PS00727 PROSITE:PS00728 PROSITE:PS51435
Pfam:PF03372 GO:GO:0005783 GO:GO:0005739 GO:GO:0005813
GO:GO:0048471 GO:GO:0005730 GO:GO:0006355 GO:GO:0046872
GO:GO:0003684 GO:GO:0016607 GO:GO:0006281 GO:GO:0016491
GO:GO:0006351 GO:GO:0080111 GO:GO:0003723 GO:GO:0003713
GO:GO:0006310 GO:GO:0045454 GO:GO:0003906 InterPro:IPR005135
SUPFAM:SSF56219 GO:GO:0045739 eggNOG:COG0708 KO:K10771
PANTHER:PTHR22748 TIGRFAMs:TIGR00633 CTD:328
GeneTree:ENSGT00530000063540 HOGENOM:HOG000034586
HOVERGEN:HBG050531 OrthoDB:EOG44J2JD GO:GO:0008408 GO:GO:0031490
GO:GO:0008081 GO:GO:0016890 GO:GO:0043488 OMA:TAYAYTF EMBL:DQ977332
RefSeq:NP_001074954.1 UniGene:Ptr.3373 ProteinModelPortal:A2T6Y4
SMR:A2T6Y4 STRING:A2T6Y4 Ensembl:ENSPTRT00000011181 GeneID:465200
KEGG:ptr:465200 InParanoid:A2T6Y4 NextBio:20843678 Uniprot:A2T6Y4
Length = 318
Score = 218 (81.8 bits), Expect = 5.8e-18, P = 5.8e-18
Identities = 56/160 (35%), Positives = 90/160 (56%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQ-CSGKPLIW 85
+++ +GRVI+AEF++F L+ Y PN G + R++WD+ ++F+ S KPL+
Sbjct: 150 EHDQEGRVIVAEFDSFVLVTAYVPNAG--RGLVRLEYRQRWDEAFRKFLKGLASRKPLVL 207
Query: 86 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 145
CGDLNV+HEEID+ +P+ G NK++ GFT ER+ FG +L+ L D+
Sbjct: 208 CGDLNVAHEEIDLRNPK--------G----NKKN---AGFTPQERQGFGELLQAVPLADS 252
Query: 146 YRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEEL 185
+R L+ F W+ + + R+DYF++S L
Sbjct: 253 FRHLYPNTPYAYTF-WTYMMNARSKNVGWRLDYFLLSHSL 291
>UNIPROTKB|A1YES6 [details] [associations]
symbol:APEX1 "DNA-(apurinic or apyrimidinic site) lyase"
species:9595 "Gorilla gorilla gorilla" [GO:0003684 "damaged DNA
binding" evidence=ISS] [GO:0003906 "DNA-(apurinic or apyrimidinic
site) lyase activity" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISS] [GO:0005654 "nucleoplasm" evidence=ISS] [GO:0005730
"nucleolus" evidence=ISS] [GO:0005737 "cytoplasm" evidence=ISS]
[GO:0005739 "mitochondrion" evidence=ISS] [GO:0006281 "DNA repair"
evidence=ISS] [GO:0008408 "3'-5' exonuclease activity"
evidence=ISS] [GO:0016491 "oxidoreductase activity" evidence=ISS]
[GO:0016607 "nuclear speck" evidence=ISS] [GO:0016890
"site-specific endodeoxyribonuclease activity, specific for altered
base" evidence=ISS] [GO:0031490 "chromatin DNA binding"
evidence=ISS] [GO:0043488 "regulation of mRNA stability"
evidence=ISS] [GO:0045739 "positive regulation of DNA repair"
evidence=ISS] [GO:0055114 "oxidation-reduction process"
evidence=ISS] [GO:0080111 "DNA demethylation" evidence=ISS]
InterPro:IPR004808 InterPro:IPR020847 InterPro:IPR020848
PROSITE:PS00726 PROSITE:PS00727 PROSITE:PS00728 PROSITE:PS51435
Pfam:PF03372 GO:GO:0005783 GO:GO:0005739 GO:GO:0005730
GO:GO:0006355 GO:GO:0046872 GO:GO:0003684 GO:GO:0016607
GO:GO:0006281 GO:GO:0016491 GO:GO:0006351 GO:GO:0080111
GO:GO:0003723 GO:GO:0006310 GO:GO:0003906 InterPro:IPR005135
SUPFAM:SSF56219 GO:GO:0045739 PANTHER:PTHR22748 TIGRFAMs:TIGR00633
HOVERGEN:HBG050531 GO:GO:0008408 GO:GO:0031490 GO:GO:0016890
GO:GO:0043488 EMBL:DQ976454 ProteinModelPortal:A1YES6
Uniprot:A1YES6
Length = 318
Score = 217 (81.4 bits), Expect = 7.5e-18, P = 7.5e-18
Identities = 56/160 (35%), Positives = 89/160 (55%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQ-CSGKPLIW 85
+++ +GRVI+AEF++F L+ Y PN G + R++WD+ + F+ S KPL+
Sbjct: 150 EHDQEGRVIVAEFDSFVLVTAYVPNAG--RGLVRLEYRQRWDEAFRRFLKGLASRKPLVL 207
Query: 86 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 145
CGDLNV+HEEID+ +P+ G NK++ GFT ER+ FG +L+ L D+
Sbjct: 208 CGDLNVAHEEIDLRNPK--------G----NKKN---AGFTPQERQGFGELLQAVPLADS 252
Query: 146 YRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEEL 185
+R L+ F W+ + + R+DYF++S L
Sbjct: 253 FRHLYPNTPYAYTF-WTYMMNARSKNVGWRLDYFLLSHSL 291
>UNIPROTKB|A2T7I6 [details] [associations]
symbol:APEX1 "DNA-(apurinic or apyrimidinic site) lyase"
species:9600 "Pongo pygmaeus" [GO:0003684 "damaged DNA binding"
evidence=ISS] [GO:0003906 "DNA-(apurinic or apyrimidinic site)
lyase activity" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
[GO:0005654 "nucleoplasm" evidence=ISS] [GO:0005730 "nucleolus"
evidence=ISS] [GO:0005737 "cytoplasm" evidence=ISS] [GO:0005739
"mitochondrion" evidence=ISS] [GO:0006281 "DNA repair"
evidence=ISS] [GO:0008408 "3'-5' exonuclease activity"
evidence=ISS] [GO:0016491 "oxidoreductase activity" evidence=ISS]
[GO:0016607 "nuclear speck" evidence=ISS] [GO:0016890
"site-specific endodeoxyribonuclease activity, specific for altered
base" evidence=ISS] [GO:0031490 "chromatin DNA binding"
evidence=ISS] [GO:0043488 "regulation of mRNA stability"
evidence=ISS] [GO:0045739 "positive regulation of DNA repair"
evidence=ISS] [GO:0055114 "oxidation-reduction process"
evidence=ISS] [GO:0080111 "DNA demethylation" evidence=ISS]
InterPro:IPR004808 InterPro:IPR020847 InterPro:IPR020848
PROSITE:PS00726 PROSITE:PS00727 PROSITE:PS00728 PROSITE:PS51435
Pfam:PF03372 GO:GO:0005783 GO:GO:0005739 GO:GO:0005730
GO:GO:0006355 GO:GO:0046872 GO:GO:0003684 GO:GO:0016607
GO:GO:0006281 GO:GO:0016491 GO:GO:0006351 GO:GO:0080111
GO:GO:0003723 GO:GO:0006310 GO:GO:0003906 InterPro:IPR005135
SUPFAM:SSF56219 GO:GO:0045739 eggNOG:COG0708 PANTHER:PTHR22748
TIGRFAMs:TIGR00633 HOGENOM:HOG000034586 HOVERGEN:HBG050531
OrthoDB:EOG44J2JD GO:GO:0008408 GO:GO:0031490 GO:GO:0016890
GO:GO:0043488 EMBL:DQ977483 ProteinModelPortal:A2T7I6 SMR:A2T7I6
STRING:A2T7I6 InParanoid:A2T7I6 Uniprot:A2T7I6
Length = 318
Score = 217 (81.4 bits), Expect = 7.5e-18, P = 7.5e-18
Identities = 56/160 (35%), Positives = 89/160 (55%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQ-CSGKPLIW 85
+++ +GRVI+AEF++F L+ Y PN G + R++WD+ + F+ S KPL+
Sbjct: 150 EHDQEGRVIVAEFDSFVLVTAYVPNAG--RGLVRLEYRQRWDEAFRRFLKGLASRKPLVL 207
Query: 86 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 145
CGDLNV+HEEID+ +P+ G NK++ GFT ER+ FG +L+ L D+
Sbjct: 208 CGDLNVAHEEIDLRNPK--------G----NKKN---AGFTPQERQGFGELLQAVPLADS 252
Query: 146 YRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEEL 185
+R L+ F W+ + + R+DYF++S L
Sbjct: 253 FRHLYPNTPYAYTF-WTYMMNARSKNVGWRLDYFLLSHSL 291
>UNIPROTKB|F1S8H5 [details] [associations]
symbol:APEX1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0080111 "DNA demethylation" evidence=IEA] [GO:0048471
"perinuclear region of cytoplasm" evidence=IEA] [GO:0046872 "metal
ion binding" evidence=IEA] [GO:0045739 "positive regulation of DNA
repair" evidence=IEA] [GO:0045454 "cell redox homeostasis"
evidence=IEA] [GO:0043488 "regulation of mRNA stability"
evidence=IEA] [GO:0031490 "chromatin DNA binding" evidence=IEA]
[GO:0016890 "site-specific endodeoxyribonuclease activity, specific
for altered base" evidence=IEA] [GO:0016607 "nuclear speck"
evidence=IEA] [GO:0016491 "oxidoreductase activity" evidence=IEA]
[GO:0008081 "phosphoric diester hydrolase activity" evidence=IEA]
[GO:0005813 "centrosome" evidence=IEA] [GO:0005739 "mitochondrion"
evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA] [GO:0003906
"DNA-(apurinic or apyrimidinic site) lyase activity" evidence=IEA]
[GO:0003713 "transcription coactivator activity" evidence=IEA]
[GO:0003684 "damaged DNA binding" evidence=IEA] [GO:0006281 "DNA
repair" evidence=IEA] InterPro:IPR004808 InterPro:IPR020847
InterPro:IPR020848 PROSITE:PS00726 PROSITE:PS00727 PROSITE:PS00728
PROSITE:PS51435 Pfam:PF03372 GO:GO:0005739 GO:GO:0005813
GO:GO:0048471 GO:GO:0005730 GO:GO:0046872 GO:GO:0003684
GO:GO:0016607 GO:GO:0006281 GO:GO:0016491 GO:GO:0080111
GO:GO:0003713 GO:GO:0090305 GO:GO:0045454 GO:GO:0003906
InterPro:IPR005135 SUPFAM:SSF56219 GO:GO:0045739 PANTHER:PTHR22748
TIGRFAMs:TIGR00633 GeneTree:ENSGT00530000063540 GO:GO:0031490
GO:GO:0008081 GO:GO:0016890 GO:GO:0043488 OMA:TAYAYTF EMBL:CT955972
Ensembl:ENSSSCT00000002390 Uniprot:F1S8H5
Length = 317
Score = 216 (81.1 bits), Expect = 9.5e-18, P = 9.5e-18
Identities = 56/160 (35%), Positives = 89/160 (55%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQ-CSGKPLIW 85
+++ +GRVI+AEF+ F L+ Y PN G + R++WD+ ++F+ S KPL+
Sbjct: 149 EHDQEGRVIVAEFDAFVLVTAYVPNAG--RGLVRLEYRQRWDEAFRKFLKGLASHKPLVL 206
Query: 86 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 145
CGDLNV+HEEID+ +P+ G NK++ GFT ER+ FG +L+ L D+
Sbjct: 207 CGDLNVAHEEIDLRNPK--------G----NKKN---AGFTPQERQGFGELLQAVPLADS 251
Query: 146 YRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEEL 185
+R L+ F W+ + + R+DYF++S L
Sbjct: 252 FRHLYPNTAYAYTF-WTYMMNARSKNVGWRLDYFLLSHSL 290
>UNIPROTKB|P23196 [details] [associations]
symbol:APEX1 "DNA-(apurinic or apyrimidinic site) lyase"
species:9913 "Bos taurus" [GO:0008081 "phosphoric diester hydrolase
activity" evidence=ISS] [GO:0045454 "cell redox homeostasis"
evidence=ISS] [GO:0005737 "cytoplasm" evidence=ISS] [GO:0048471
"perinuclear region of cytoplasm" evidence=ISS] [GO:0046872 "metal
ion binding" evidence=ISS] [GO:0016491 "oxidoreductase activity"
evidence=ISS] [GO:0005634 "nucleus" evidence=ISS] [GO:0003713
"transcription coactivator activity" evidence=ISS] [GO:0003677 "DNA
binding" evidence=ISS] [GO:0003906 "DNA-(apurinic or apyrimidinic
site) lyase activity" evidence=ISS] [GO:0043488 "regulation of mRNA
stability" evidence=ISS] [GO:0080111 "DNA demethylation"
evidence=ISS] [GO:0016607 "nuclear speck" evidence=ISS] [GO:0005739
"mitochondrion" evidence=ISS] [GO:0005654 "nucleoplasm"
evidence=ISS] [GO:0005730 "nucleolus" evidence=ISS] [GO:0006281
"DNA repair" evidence=ISS] [GO:0031490 "chromatin DNA binding"
evidence=ISS] [GO:0016890 "site-specific endodeoxyribonuclease
activity, specific for altered base" evidence=ISS] [GO:0008408
"3'-5' exonuclease activity" evidence=ISS] [GO:0003684 "damaged DNA
binding" evidence=ISS] [GO:0045739 "positive regulation of DNA
repair" evidence=ISS] [GO:0005783 "endoplasmic reticulum"
evidence=IEA] [GO:0005813 "centrosome" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006310 "DNA recombination" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR004808 InterPro:IPR020847
InterPro:IPR020848 PROSITE:PS00726 PROSITE:PS00727 PROSITE:PS00728
PROSITE:PS51435 Pfam:PF03372 GO:GO:0005783 GO:GO:0005739
GO:GO:0005813 GO:GO:0048471 GO:GO:0005730 GO:GO:0006355
GO:GO:0046872 GO:GO:0003684 GO:GO:0016607 GO:GO:0006281
GO:GO:0016491 GO:GO:0006351 GO:GO:0080111 GO:GO:0003723
GO:GO:0003713 GO:GO:0006310 GO:GO:0045454 GO:GO:0003906
InterPro:IPR005135 SUPFAM:SSF56219 GO:GO:0045739 eggNOG:COG0708
KO:K10771 PANTHER:PTHR22748 TIGRFAMs:TIGR00633 EMBL:X56685
EMBL:BC122610 IPI:IPI00715890 PIR:S26830 RefSeq:NP_788782.2
UniGene:Bt.1302 PDB:1LYR PDB:1XZR PDB:1XZS PDB:1XZT PDBsum:1LYR
PDBsum:1XZR PDBsum:1XZS PDBsum:1XZT ProteinModelPortal:P23196
SMR:P23196 STRING:P23196 PRIDE:P23196 Ensembl:ENSBTAT00000003559
GeneID:281630 KEGG:bta:281630 CTD:328 GeneTree:ENSGT00530000063540
HOGENOM:HOG000034586 HOVERGEN:HBG050531 InParanoid:P23196
OrthoDB:EOG44J2JD BRENDA:4.2.99.18 NextBio:20805567 GO:GO:0008408
GO:GO:0031490 GO:GO:0008081 GO:GO:0016890 GO:GO:0043488
Uniprot:P23196
Length = 318
Score = 212 (79.7 bits), Expect = 2.5e-17, P = 2.5e-17
Identities = 54/160 (33%), Positives = 90/160 (56%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQ-CSGKPLIW 85
+++ +GRVI+AE++ F L+ Y PN G + R++WD+ ++F+ S KPL+
Sbjct: 150 EHDQEGRVIVAEYDAFVLVTAYVPNAG--RGLVRLEYRQRWDEAFRKFLKGLASRKPLVL 207
Query: 86 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 145
CGDLNV+HEEID+ +P+ G NK++ GFT ER+ FG +L+ L D+
Sbjct: 208 CGDLNVAHEEIDLRNPK--------G----NKKN---AGFTPQERQGFGELLQAVPLTDS 252
Query: 146 YRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEEL 185
+R L+ F W+ + + R+DYF++S+ +
Sbjct: 253 FRHLYPNTAYAYTF-WTYMMNARSKNVGWRLDYFLLSQSV 291
>TIGR_CMR|BA_3868 [details] [associations]
symbol:BA_3868 "exodeoxyribonuclease III" species:198094
"Bacillus anthracis str. Ames" [GO:0006281 "DNA repair"
evidence=ISS] [GO:0008853 "exodeoxyribonuclease III activity"
evidence=ISS] InterPro:IPR004808 InterPro:IPR020847
InterPro:IPR020848 PROSITE:PS00726 PROSITE:PS00728 PROSITE:PS51435
Pfam:PF03372 EMBL:AE016879 EMBL:AE017334 EMBL:AE017225
GenomeReviews:AE016879_GR GenomeReviews:AE017225_GR
GenomeReviews:AE017334_GR GO:GO:0003677 GO:GO:0006281 GO:GO:0005622
GO:GO:0090305 GO:GO:0004519 InterPro:IPR005135 SUPFAM:SSF56219
PANTHER:PTHR22748 TIGRFAMs:TIGR00633 HOGENOM:HOG000034586 KO:K01142
GO:GO:0008853 HSSP:P27695 RefSeq:NP_846117.1 RefSeq:YP_020508.1
RefSeq:YP_029837.1 ProteinModelPortal:Q81WU8 DNASU:1087681
EnsemblBacteria:EBBACT00000011002 EnsemblBacteria:EBBACT00000017516
EnsemblBacteria:EBBACT00000022149 GeneID:1087681 GeneID:2815201
GeneID:2853014 KEGG:ban:BA_3868 KEGG:bar:GBAA_3868 KEGG:bat:BAS3584
OMA:ADVFCIQ ProtClustDB:CLSK917177
BioCyc:BANT260799:GJAJ-3643-MONOMER
BioCyc:BANT261594:GJ7F-3759-MONOMER Uniprot:Q81WU8
Length = 252
Score = 198 (74.8 bits), Expect = 7.7e-16, P = 7.7e-16
Identities = 44/129 (34%), Positives = 77/129 (59%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGKP-LIW 85
+++ +GRVI EFE FY++ Y PN+ K + R KW+ + ++ + K +++
Sbjct: 85 EHDQEGRVITLEFEDFYIITLYTPNS--KRGLERLEYRMKWEDDFRAYIKRLDEKKSVVF 142
Query: 86 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 145
CGDLNV+H+EID+ +P+ N+++ PGF+ ER++F IL+EG ID
Sbjct: 143 CGDLNVAHKEIDLKNPK------------SNRKN---PGFSDEEREKFTCILEEG-FIDT 186
Query: 146 YRFLHKEKD 154
YR+L+ +++
Sbjct: 187 YRYLYPDQE 195
Score = 165 (63.1 bits), Expect = 2.4e-12, P = 2.4e-12
Identities = 40/98 (40%), Positives = 58/98 (59%)
Query: 117 KEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRM-- 174
K + PGF+ ER++F IL+EG ID YR+L+ D + +SW +G R K +
Sbjct: 159 KSNRKNPGFSDEEREKFTCILEEG-FIDTYRYLYP--DQEGAYSWWSYRMGA-RAKNIGW 214
Query: 175 RIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPV 212
R+DYF+VSE +KD+I A ++ + GSDHCPV
Sbjct: 215 RLDYFVVSERMKDQITAAKINSEVM------GSDHCPV 246
>UNIPROTKB|G3V3M6 [details] [associations]
symbol:APEX1 "DNA-(apurinic or apyrimidinic site) lyase"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0006281 "DNA repair" evidence=IEA] [GO:0004521
"endoribonuclease activity" evidence=IEA] [GO:0005667
"transcription factor complex" evidence=IEA] [GO:0005739
"mitochondrion" evidence=IEA] [GO:0007568 "aging" evidence=IEA]
[GO:0014912 "negative regulation of smooth muscle cell migration"
evidence=IEA] [GO:0032403 "protein complex binding" evidence=IEA]
[GO:0042493 "response to drug" evidence=IEA] [GO:0045454 "cell
redox homeostasis" evidence=IEA] [GO:0045750 "positive regulation
of S phase of mitotic cell cycle" evidence=IEA] [GO:0051059
"NF-kappaB binding" evidence=IEA] [GO:0070301 "cellular response to
hydrogen peroxide" evidence=IEA] [GO:0071320 "cellular response to
cAMP" evidence=IEA] [GO:0071375 "cellular response to peptide
hormone stimulus" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005813 "centrosome" evidence=IDA] InterPro:IPR004808
InterPro:IPR020847 PROSITE:PS00726 PROSITE:PS51435 Pfam:PF03372
GO:GO:0005634 GO:GO:0005737 GO:GO:0005813 GO:GO:0003677
GO:GO:0006281 GO:GO:0090305 GO:GO:0045454 GO:GO:0004519
InterPro:IPR005135 SUPFAM:SSF56219 PANTHER:PTHR22748
TIGRFAMs:TIGR00633 EMBL:AL355075 HGNC:HGNC:587 ChiTaRS:APEX1
ProteinModelPortal:G3V3M6 SMR:G3V3M6 Ensembl:ENST00000553681
ArrayExpress:G3V3M6 Bgee:G3V3M6 Uniprot:G3V3M6
Length = 263
Score = 195 (73.7 bits), Expect = 1.6e-15, P = 1.6e-15
Identities = 48/125 (38%), Positives = 76/125 (60%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQ-CSGKPLIW 85
+++ +GRVI+AEF++F L+ Y PN G + R++WD+ ++F+ S KPL+
Sbjct: 150 EHDQEGRVIVAEFDSFVLVTAYVPNAG--RGLVRLEYRQRWDEAFRKFLKGLASRKPLVL 207
Query: 86 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 145
CGDLNV+HEEID+ +P+ G NK++ GFT ER+ FG +L+ L D+
Sbjct: 208 CGDLNVAHEEIDLRNPK--------G----NKKN---AGFTPQERQGFGELLQAVPLADS 252
Query: 146 YRFLH 150
+R L+
Sbjct: 253 FRHLY 257
>TAIR|locus:2060540 [details] [associations]
symbol:ARP "apurinic endonuclease-redox protein"
species:3702 "Arabidopsis thaliana" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004518 "nuclease activity" evidence=IEA] [GO:0004519
"endonuclease activity" evidence=IEA] [GO:0005622 "intracellular"
evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA] [GO:0042644
"chloroplast nucleoid" evidence=IDA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=RCA] [GO:0008284 "positive
regulation of cell proliferation" evidence=RCA] [GO:0009640
"photomorphogenesis" evidence=RCA] [GO:0010388 "cullin
deneddylation" evidence=RCA] [GO:0016567 "protein ubiquitination"
evidence=RCA] [GO:0016571 "histone methylation" evidence=RCA]
[GO:0016579 "protein deubiquitination" evidence=RCA] [GO:0043687
"post-translational protein modification" evidence=RCA] [GO:0045893
"positive regulation of transcription, DNA-dependent"
evidence=RCA;TAS] [GO:0048573 "photoperiodism, flowering"
evidence=RCA] [GO:0051276 "chromosome organization" evidence=RCA]
[GO:0003906 "DNA-(apurinic or apyrimidinic site) lyase activity"
evidence=IDA] InterPro:IPR003034 InterPro:IPR004808
InterPro:IPR020847 InterPro:IPR020848 Pfam:PF02037 PROSITE:PS00726
PROSITE:PS00727 PROSITE:PS00728 PROSITE:PS50800 PROSITE:PS51435
SMART:SM00513 Pfam:PF03372 GO:GO:0005634 GO:GO:0045893
EMBL:CP002685 GO:GO:0046872 GO:GO:0003677 GO:GO:0006281
Gene3D:1.10.720.30 GO:GO:0090305 GO:GO:0004519 GO:GO:0003906
InterPro:IPR005135 SUPFAM:SSF56219 eggNOG:COG0708 PANTHER:PTHR22748
TIGRFAMs:TIGR00633 EMBL:AC004625 EMBL:X76912 IPI:IPI00529731
PIR:T02441 RefSeq:NP_181677.1 UniGene:At.25567
ProteinModelPortal:P45951 SMR:P45951 STRING:P45951 PaxDb:P45951
PRIDE:P45951 EnsemblPlants:AT2G41460.1 GeneID:818744
KEGG:ath:AT2G41460 TAIR:At2g41460 InParanoid:P45951 KO:K01142
OMA:IFNPAGN PhylomeDB:P45951 ProtClustDB:CLSN2683775
Genevestigator:P45951 GermOnline:AT2G41460 GO:GO:0042644
Uniprot:P45951
Length = 536
Score = 197 (74.4 bits), Expect = 7.9e-15, P = 7.9e-15
Identities = 46/124 (37%), Positives = 71/124 (57%)
Query: 28 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 86
++ +GR++ AEF++FYL+NTY PN+G + S+ R +WD+ + + + KP++
Sbjct: 369 HDTEGRIVTAEFDSFYLINTYVPNSGDGLKRLSY-RIEEWDRTLSNHIKELEKSKPVVLT 427
Query: 87 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 146
GDLN +HEEID+ +P G NK GFTI ER+ FGA L + +D +
Sbjct: 428 GDLNCAHEEIDIFNPA--------G----NKRS---AGFTIEERQSFGANLLDKGFVDTF 472
Query: 147 RFLH 150
R H
Sbjct: 473 RKQH 476
Score = 118 (46.6 bits), Expect = 0.00016, P = 0.00016
Identities = 33/90 (36%), Positives = 46/90 (51%)
Query: 124 GFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVS 182
GFTI ER+ FGA L + +D +R K+ G++ W G+ K R+DYF+VS
Sbjct: 450 GFTIEERQSFGANLLDKGFVDTFR---KQHPGVVGYTYWGYRHGGRKTNKGWRLDYFLVS 506
Query: 183 EELKDRIIACEMQGHGIELEGFYGSDHCPV 212
+ IA + I L GSDHCP+
Sbjct: 507 QS-----IAANVHDSYI-LPDINGSDHCPI 530
>WB|WBGene00001372 [details] [associations]
symbol:exo-3 species:6239 "Caenorhabditis elegans"
[GO:0006281 "DNA repair" evidence=IEA;IMP] [GO:0004518 "nuclease
activity" evidence=IEA] [GO:0009792 "embryo development ending in
birth or egg hatching" evidence=IMP] [GO:0040007 "growth"
evidence=IMP] [GO:0002119 "nematode larval development"
evidence=IMP] [GO:0009790 "embryo development" evidence=IMP]
[GO:0003906 "DNA-(apurinic or apyrimidinic site) lyase activity"
evidence=IDA] [GO:0008081 "phosphoric diester hydrolase activity"
evidence=IDA] [GO:0006284 "base-excision repair" evidence=IMP;IDA]
InterPro:IPR004808 PROSITE:PS51435 Pfam:PF03372 GO:GO:0009792
GO:GO:0040007 GO:GO:0002119 GO:GO:0006284 GO:GO:0004527
GO:GO:0090305 GO:GO:0003906 InterPro:IPR005135 SUPFAM:SSF56219
KO:K10771 OMA:GIRACLK PANTHER:PTHR22748 TIGRFAMs:TIGR00633
GeneTree:ENSGT00530000063540 GO:GO:0008081 EMBL:Z81108
EMBL:AF034258 PIR:T24066 RefSeq:NP_001021584.1 UniGene:Cel.19620
HSSP:P27695 ProteinModelPortal:G5EBR7 SMR:G5EBR7 IntAct:G5EBR7
PRIDE:G5EBR7 EnsemblMetazoa:R09B3.1a.1 EnsemblMetazoa:R09B3.1a.2
GeneID:173069 KEGG:cel:CELE_R09B3.1 CTD:173069 WormBase:R09B3.1a
NextBio:878149 Uniprot:G5EBR7
Length = 288
Score = 174 (66.3 bits), Expect = 4.2e-13, P = 4.2e-13
Identities = 50/149 (33%), Positives = 79/149 (53%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIW 85
+++ GR+I+AEF FY + Y PN+G K + ++R +W+K + E + + K P+I+
Sbjct: 121 EFDTAGRLIIAEFSKFYFIGAYVPNSGAKLV--NLEKRGRWEKLLTEKMKEMDEKKPVIY 178
Query: 86 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 145
GDLNV+H EID+ +PE N NK GFT ER F +L+ G D
Sbjct: 179 GGDLNVAHNEIDLKNPES------NR----NKT----AGFTDQERGWFSEMLELG-FTDT 223
Query: 146 YRFLHKEKDMDCGFSWSGNPIGKYRGKRM 174
+R +H ++ +S+ N K G R+
Sbjct: 224 FRAMHPDEKKYSFWSYLANSRQKDVGWRL 252
>ZFIN|ZDB-GENE-040426-2761 [details] [associations]
symbol:apex1 "APEX nuclease (multifunctional DNA
repair enzyme) 1" species:7955 "Danio rerio" [GO:0003677 "DNA
binding" evidence=IEA] [GO:0004519 "endonuclease activity"
evidence=IEA] [GO:0005622 "intracellular" evidence=IEA] [GO:0006281
"DNA repair" evidence=IEA] [GO:0004518 "nuclease activity"
evidence=IEA] [GO:0003906 "DNA-(apurinic or apyrimidinic site)
lyase activity" evidence=IEA] [GO:0043066 "negative regulation of
apoptotic process" evidence=IMP] [GO:0001947 "heart looping"
evidence=IMP] [GO:0060047 "heart contraction" evidence=IMP]
[GO:0010628 "positive regulation of gene expression" evidence=IMP]
[GO:0080111 "DNA demethylation" evidence=ISS] [GO:0016829 "lyase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005783 "endoplasmic
reticulum" evidence=IEA] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0005739 "mitochondrion"
evidence=IEA] [GO:0006974 "response to DNA damage stimulus"
evidence=IEA] [GO:0016491 "oxidoreductase activity" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IEA] [GO:0016607 "nuclear speck"
evidence=IEA] InterPro:IPR004808 InterPro:IPR020847
InterPro:IPR020848 PROSITE:PS00726 PROSITE:PS00727 PROSITE:PS00728
PROSITE:PS51435 Pfam:PF03372 ZFIN:ZDB-GENE-040426-2761
GO:GO:0005783 GO:GO:0005739 GO:GO:0043066 GO:GO:0005730
GO:GO:0046872 GO:GO:0003677 GO:GO:0016607 GO:GO:0006281
GO:GO:0080111 GO:GO:0003723 GO:GO:0060047 GO:GO:0090305
GO:GO:0001947 GO:GO:0004519 GO:GO:0003906 InterPro:IPR005135
SUPFAM:SSF56219 eggNOG:COG0708 KO:K10771 PANTHER:PTHR22748
TIGRFAMs:TIGR00633 CTD:328 GeneTree:ENSGT00530000063540
HOGENOM:HOG000034586 HOVERGEN:HBG050531 OrthoDB:EOG44J2JD
EMBL:EF041101 EMBL:EF041102 EMBL:EF041103 EMBL:EF041104
EMBL:BX323558 EMBL:BC055545 EMBL:BC097053 EMBL:BC164240
IPI:IPI00498781 RefSeq:NP_998586.1 UniGene:Dr.20170 PDB:2O3C
PDBsum:2O3C ProteinModelPortal:A0MTA1 SMR:A0MTA1 STRING:A0MTA1
PRIDE:A0MTA1 Ensembl:ENSDART00000067374 GeneID:406730
KEGG:dre:406730 InParanoid:Q7SXL6 EvolutionaryTrace:A0MTA1
NextBio:20818249 ArrayExpress:A0MTA1 Bgee:A0MTA1 Uniprot:A0MTA1
Length = 310
Score = 162 (62.1 bits), Expect = 1.4e-11, P = 1.4e-11
Identities = 38/111 (34%), Positives = 61/111 (54%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIW 85
+++ +GRVI AEF F+L+ Y PN + R+ WD + ++ KPL+
Sbjct: 143 EHDKEGRVITAEFPDFFLVTAYVPNASRGLVRLDY--RKTWDVDFRAYLCGLDARKPLVL 200
Query: 86 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQ---PGFTIAERKRF 133
CGDLNV+H+EID+ +P+ K G+ P +E + Q GFT + R+ +
Sbjct: 201 CGDLNVAHQEIDLKNPK--GNRKNAGFTPEEREGFTQLLEAGFTDSFRELY 249
>ASPGD|ASPL0000077623 [details] [associations]
symbol:AN4736 species:162425 "Emericella nidulans"
[GO:0034614 "cellular response to reactive oxygen species"
evidence=IEA] [GO:0008311 "double-stranded DNA specific 3'-5'
exodeoxyribonuclease activity" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0004519 "endonuclease activity" evidence=IEA]
[GO:0006281 "DNA repair" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR004808 InterPro:IPR020847
InterPro:IPR020848 PROSITE:PS00726 PROSITE:PS00728 PROSITE:PS51435
Pfam:PF03372 GO:GO:0003677 GO:GO:0006281 GO:GO:0005622
GO:GO:0090305 GO:GO:0004519 EMBL:BN001303 InterPro:IPR005135
SUPFAM:SSF56219 GO:GO:0016829 PANTHER:PTHR22748 OMA:FIDSYRC
EnsemblFungi:CADANIAT00005693 HOGENOM:HOG000193944 Uniprot:C8VAT9
Length = 612
Score = 154 (59.3 bits), Expect = 5.1e-09, P = 5.1e-09
Identities = 62/202 (30%), Positives = 87/202 (43%)
Query: 23 LSALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRR--RKWDKRIQEFVLQCSG 80
L A + +GR ++ EF F L+ Y P N E ++F++ D R++ V G
Sbjct: 129 LDAETLDSEGRCVILEFPAFVLIGLYCPANR-DESRDAFRQNFLDLMDARVRNLV--ALG 185
Query: 81 KPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRF-GAIL-- 137
K + GD+N+S EID +H AA + V + P + + G ++
Sbjct: 186 KRVFVTGDINISRGEIDAAH----AAENIKKGVTTEDDFVSAPARRLFNQLLIDGKVVGD 241
Query: 138 -KEGR----LIDAYRFLH-KEKDM-DCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRII 190
EGR L D R H K K M C G Y G R IDY + S ++KD
Sbjct: 242 RDEGREQPVLFDICRSFHPKRKGMYTCWEQRINARPGNY-GSR--IDYVLCSLDMKDWFF 298
Query: 191 ACEMQGHGIELEGFYGSDHCPV 212
+Q EG GSDHCPV
Sbjct: 299 DSNIQ------EGLMGSDHCPV 314
>TIGR_CMR|CJE_0305 [details] [associations]
symbol:CJE_0305 "exodeoxyribonuclease III" species:195099
"Campylobacter jejuni RM1221" [GO:0006281 "DNA repair"
evidence=ISS] [GO:0008853 "exodeoxyribonuclease III activity"
evidence=ISS] InterPro:IPR004808 PROSITE:PS51435 Pfam:PF03372
GO:GO:0006281 EMBL:CP000025 GenomeReviews:CP000025_GR GO:GO:0090305
InterPro:IPR005135 SUPFAM:SSF56219 eggNOG:COG0708 PANTHER:PTHR22748
TIGRFAMs:TIGR00633 HOGENOM:HOG000034586 KO:K01142 GO:GO:0008853
RefSeq:YP_178325.1 ProteinModelPortal:Q5HWL0 STRING:Q5HWL0
GeneID:3231067 KEGG:cjr:CJE0305 PATRIC:20042312 OMA:IMKLLSW
ProtClustDB:CLSK878706 BioCyc:CJEJ195099:GJC0-310-MONOMER
Uniprot:Q5HWL0
Length = 259
Score = 140 (54.3 bits), Expect = 6.9e-08, P = 6.9e-08
Identities = 43/131 (32%), Positives = 71/131 (54%)
Query: 29 EPDGRVILAEFETFYLLNTYAPNNGWKEEEN-SFQRRRKWDKRIQEFVLQCSGKPLIWCG 87
+ +GRV+ F+ L N Y PN G K+EE +F+ + D + L G +I CG
Sbjct: 93 DEEGRVLEHRFKNIALFNIYFPN-GQKDEERLNFKMQFYADFLVYLDKLLKDGFEIIICG 151
Query: 88 DLNVSHEEIDVSHPEFFAAAKLNGYVPPNK---EDWGQPGFTIAERKRFGAILKEGRLID 144
D+N +H+EID++HP+ A A +G++P + +D + GF R+ G I KE
Sbjct: 152 DVNTAHKEIDLTHPK--ANANTSGFLPIERAWIDDLLKLGFIDTFREINGEI-KEKYSWW 208
Query: 145 AYRFLHKEKDM 155
+YR +E+++
Sbjct: 209 SYRMKARERNV 219
>UNIPROTKB|G3V5Q1 [details] [associations]
symbol:APEX1 "DNA-(apurinic or apyrimidinic site) lyase"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004519 "endonuclease activity" evidence=IEA] [GO:0006281 "DNA
repair" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005813 "centrosome" evidence=IDA] InterPro:IPR004808
InterPro:IPR020847 InterPro:IPR020848 PROSITE:PS00726
PROSITE:PS00727 PROSITE:PS51435 Pfam:PF03372 GO:GO:0005634
GO:GO:0005813 GO:GO:0003677 GO:GO:0006281 GO:GO:0090305
GO:GO:0004519 InterPro:IPR005135 SUPFAM:SSF56219 PANTHER:PTHR22748
TIGRFAMs:TIGR00633 EMBL:AL355075 HGNC:HGNC:587 ChiTaRS:APEX1
ProteinModelPortal:G3V5Q1 SMR:G3V5Q1 Ensembl:ENST00000555839
ArrayExpress:G3V5Q1 Bgee:G3V5Q1 Uniprot:G3V5Q1
Length = 242
Score = 137 (53.3 bits), Expect = 1.3e-07, P = 1.3e-07
Identities = 35/88 (39%), Positives = 54/88 (61%)
Query: 64 RRKWDKRIQEFVLQ-CSGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQ 122
R++WD+ ++F+ S KPL+ CGDLNV+HEEID+ +P+ G NK++
Sbjct: 156 RQRWDEAFRKFLKGLASRKPLVLCGDLNVAHEEIDLRNPK--------G----NKKN--- 200
Query: 123 PGFTIAERKRFGAILKEGRLIDAYRFLH 150
GFT ER+ FG +L+ L D++R L+
Sbjct: 201 AGFTPQERQGFGELLQAVPLADSFRHLY 228
>UNIPROTKB|H7C4A8 [details] [associations]
symbol:APEX1 "DNA-(apurinic or apyrimidinic site) lyase"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004519 "endonuclease activity" evidence=IEA] [GO:0005622
"intracellular" evidence=IEA] [GO:0006281 "DNA repair"
evidence=IEA] InterPro:IPR004808 InterPro:IPR020847 PROSITE:PS00726
PROSITE:PS51435 Pfam:PF03372 GO:GO:0003677 GO:GO:0006281
GO:GO:0005622 GO:GO:0090305 GO:GO:0004519 InterPro:IPR005135
SUPFAM:SSF56219 PANTHER:PTHR22748 TIGRFAMs:TIGR00633 EMBL:AL355075
HGNC:HGNC:587 ChiTaRS:APEX1 ProteinModelPortal:H7C4A8 PRIDE:H7C4A8
Ensembl:ENST00000438886 Uniprot:H7C4A8
Length = 150
Score = 116 (45.9 bits), Expect = 7.1e-07, P = 7.1e-07
Identities = 24/55 (43%), Positives = 35/55 (63%)
Query: 48 YAPNNGWKEEENSFQRRRKWDKRIQEFVLQ-CSGKPLIWCGDLNVSHEEIDVSHP 101
Y PN G + R++WD+ ++F+ S KPL+ CGDLNV+HEEID+ +P
Sbjct: 98 YVPNAG--RGLVRLEYRQRWDEAFRKFLKGLASRKPLVLCGDLNVAHEEIDLRNP 150
>UNIPROTKB|Q2KFC8 [details] [associations]
symbol:MGCH7_ch7g758 "Putative uncharacterized protein"
species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR004808
InterPro:IPR020847 InterPro:IPR020848 PROSITE:PS00726
PROSITE:PS00728 PROSITE:PS51435 Pfam:PF03372 GO:GO:0003677
GO:GO:0006281 GO:GO:0005622 GO:GO:0090305 GO:GO:0004519
InterPro:IPR005135 SUPFAM:SSF56219 PANTHER:PTHR22748 EMBL:CM000230
ProteinModelPortal:Q2KFC8 Uniprot:Q2KFC8
Length = 626
Score = 134 (52.2 bits), Expect = 2.4e-06, P = 2.4e-06
Identities = 51/194 (26%), Positives = 78/194 (40%)
Query: 29 EPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQR--RRKWDKRIQEFVLQCSGKPLIWC 86
+ +GR ++ EF F L+ Y+P E F++ + D R++ V GK ++
Sbjct: 107 DSEGRCMILEFPAFVLIGVYSPATR-DETRTDFRQAFHKAMDARVRNLVAM--GKQVVLT 163
Query: 87 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAIL----KEGR- 141
GDLN+ E+D + +L E + P FG + EGR
Sbjct: 164 GDLNIIRNELDTAG----ILERLRKEEMTIDEFFSTPSRRFLNHMVFGGTVVGGRDEGRE 219
Query: 142 ---LIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHG 198
+ D R H ++ + W + RIDY + S +KD I +Q
Sbjct: 220 EPVMYDLGREFHPDR-IGMYTCWETRKNARPGNFGSRIDYVLCSAGMKDWFIDANIQ--- 275
Query: 199 IELEGFYGSDHCPV 212
EG GSDHCPV
Sbjct: 276 ---EGLLGSDHCPV 286
>UNIPROTKB|Q9KQY7 [details] [associations]
symbol:VC1860 "Exodeoxyribonuclease III" species:243277
"Vibrio cholerae O1 biovar El Tor str. N16961" [GO:0006281 "DNA
repair" evidence=ISS] [GO:0008853 "exodeoxyribonuclease III
activity" evidence=ISS] InterPro:IPR004808 InterPro:IPR020847
InterPro:IPR020848 PROSITE:PS00726 PROSITE:PS00727 PROSITE:PS51435
Pfam:PF03372 GO:GO:0003677 GenomeReviews:AE003852_GR GO:GO:0006281
GO:GO:0005622 GO:GO:0004519 InterPro:IPR005135 SUPFAM:SSF56219
PANTHER:PTHR22748 TIGRFAMs:TIGR00633 KO:K01142 OMA:EVNAKRW
ProtClustDB:PRK11756 GO:GO:0008853 HSSP:P09030 EMBL:AE004261
PIR:G82148 RefSeq:NP_231494.1 ProteinModelPortal:Q9KQY7 SMR:Q9KQY7
DNASU:2613614 GeneID:2613614 KEGG:vch:VC1860 PATRIC:20082762
Uniprot:Q9KQY7
Length = 268
Score = 121 (47.7 bits), Expect = 1.9e-05, P = 1.9e-05
Identities = 51/196 (26%), Positives = 85/196 (43%)
Query: 29 EPDGRVILAEF-----ETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQ--CSGK 81
E R+I+A F + +LN Y P E E F +R++ + + ++ + + +
Sbjct: 86 EHQKRMIMATFADQNGQKTTILNGYFPQGDNVEHETKFPYKRQFYRDLMTYLREHRSNSE 145
Query: 82 PLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPG---FTIAERKRFGAILK 138
L+ GD+N+S ++D+ G N++ W Q G F ER+ +L
Sbjct: 146 RLVVMGDINISPLDLDI------------GIGEANRKRWLQTGKCSFQPEEREWLQTLLD 193
Query: 139 EGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKR-MRIDYFIVSEELKDRIIACEMQGH 197
G L+D +R LH D+ FSW + R +RID + + L + C+ G
Sbjct: 194 WG-LVDTFRQLHP--DVSDQFSWFDYRSRGFEDNRGLRIDVILATPTLAE---TCQEAGI 247
Query: 198 GIELEGF-YGSDHCPV 212
EL SDH P+
Sbjct: 248 DYELRAIDKPSDHAPI 263
>TIGR_CMR|VC_1860 [details] [associations]
symbol:VC_1860 "exodeoxyribonuclease III" species:686
"Vibrio cholerae O1 biovar El Tor" [GO:0006281 "DNA repair"
evidence=ISS] [GO:0008853 "exodeoxyribonuclease III activity"
evidence=ISS] InterPro:IPR004808 InterPro:IPR020847
InterPro:IPR020848 PROSITE:PS00726 PROSITE:PS00727 PROSITE:PS51435
Pfam:PF03372 GO:GO:0003677 GenomeReviews:AE003852_GR GO:GO:0006281
GO:GO:0005622 GO:GO:0004519 InterPro:IPR005135 SUPFAM:SSF56219
PANTHER:PTHR22748 TIGRFAMs:TIGR00633 KO:K01142 OMA:EVNAKRW
ProtClustDB:PRK11756 GO:GO:0008853 HSSP:P09030 EMBL:AE004261
PIR:G82148 RefSeq:NP_231494.1 ProteinModelPortal:Q9KQY7 SMR:Q9KQY7
DNASU:2613614 GeneID:2613614 KEGG:vch:VC1860 PATRIC:20082762
Uniprot:Q9KQY7
Length = 268
Score = 121 (47.7 bits), Expect = 1.9e-05, P = 1.9e-05
Identities = 51/196 (26%), Positives = 85/196 (43%)
Query: 29 EPDGRVILAEF-----ETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQ--CSGK 81
E R+I+A F + +LN Y P E E F +R++ + + ++ + + +
Sbjct: 86 EHQKRMIMATFADQNGQKTTILNGYFPQGDNVEHETKFPYKRQFYRDLMTYLREHRSNSE 145
Query: 82 PLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPG---FTIAERKRFGAILK 138
L+ GD+N+S ++D+ G N++ W Q G F ER+ +L
Sbjct: 146 RLVVMGDINISPLDLDI------------GIGEANRKRWLQTGKCSFQPEEREWLQTLLD 193
Query: 139 EGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKR-MRIDYFIVSEELKDRIIACEMQGH 197
G L+D +R LH D+ FSW + R +RID + + L + C+ G
Sbjct: 194 WG-LVDTFRQLHP--DVSDQFSWFDYRSRGFEDNRGLRIDVILATPTLAE---TCQEAGI 247
Query: 198 GIELEGF-YGSDHCPV 212
EL SDH P+
Sbjct: 248 DYELRAIDKPSDHAPI 263
>MGI|MGI:1924872 [details] [associations]
symbol:Apex2 "apurinic/apyrimidinic endonuclease 2"
species:10090 "Mus musculus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003906 "DNA-(apurinic or apyrimidinic site)
lyase activity" evidence=IEA] [GO:0004518 "nuclease activity"
evidence=IEA] [GO:0004519 "endonuclease activity" evidence=IEA]
[GO:0004527 "exonuclease activity" evidence=IEA] [GO:0005622
"intracellular" evidence=IEA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0005739 "mitochondrion"
evidence=IDA] [GO:0005743 "mitochondrial inner membrane"
evidence=IDA] [GO:0006281 "DNA repair" evidence=IEA] [GO:0006310
"DNA recombination" evidence=IEA] [GO:0006974 "response to DNA
damage stimulus" evidence=IEA] [GO:0007049 "cell cycle"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0016829 "lyase
activity" evidence=IEA] [GO:0046872 "metal ion binding"
evidence=IEA] InterPro:IPR004808 InterPro:IPR010666
InterPro:IPR020847 Pfam:PF06839 PROSITE:PS00726 PROSITE:PS00727
PROSITE:PS00728 PROSITE:PS51435 Pfam:PF03372 MGI:MGI:1924872
GO:GO:0005634 GO:GO:0005743 GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 GO:GO:0006281 GO:GO:0007049 GO:GO:0006310
GO:GO:0004527 GO:GO:0090305 GO:GO:0004519 GO:GO:0003906
InterPro:IPR005135 SUPFAM:SSF56219 eggNOG:COG0708 PANTHER:PTHR22748
TIGRFAMs:TIGR00633 GeneTree:ENSGT00530000063540 CTD:27301
HOVERGEN:HBG054715 KO:K10772 OrthoDB:EOG4NS3BQ EMBL:AB072498
EMBL:AB085235 EMBL:AK021248 EMBL:AK040145 EMBL:AK050858
EMBL:AK080916 EMBL:AK081677 EMBL:AK088918 EMBL:BC026769
EMBL:BC078633 IPI:IPI00225176 IPI:IPI00473955 IPI:IPI00473962
IPI:IPI00474999 IPI:IPI00828973 RefSeq:NP_084219.1
UniGene:Mm.440275 ProteinModelPortal:Q68G58 SMR:Q68G58
STRING:Q68G58 PhosphoSite:Q68G58 PRIDE:Q68G58
Ensembl:ENSMUST00000112725 Ensembl:ENSMUST00000112727 GeneID:77622
KEGG:mmu:77622 NextBio:347242 Bgee:Q68G58 CleanEx:MM_APEX2
Genevestigator:Q68G58 GermOnline:ENSMUSG00000025269 Uniprot:Q68G58
Length = 516
Score = 120 (47.3 bits), Expect = 8.7e-05, P = 8.7e-05
Identities = 49/182 (26%), Positives = 78/182 (42%)
Query: 33 RVILAEFETFYLLNTYAPN-NGWKEEENSFQRRRKWDKRIQEFVLQCSGKPLIWCGDLNV 91
R + + +T L+N Y P+ + K E +F+ R +++ L +G +I GDLN
Sbjct: 140 RTLEGKEKTLTLINVYCPHADPGKPERLTFKMRFYRLLQMRAEALLAAGSHVIILGDLNT 199
Query: 92 SHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHK 151
+H ID H + A+ L + W G G + G +D+YR+LH
Sbjct: 200 AHRPID--HCD---ASSLECFEEDPGRKW-MDGLLSNPGDEAGPHI--GLFMDSYRYLHP 251
Query: 152 EKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHC 210
++ F+ WS ++ R+DY L DR + + L GSDHC
Sbjct: 252 KQQR--AFTCWSVVSGARHLNYGSRLDYV-----LGDRALVIDTFQASFLLPEVMGSDHC 304
Query: 211 PV 212
PV
Sbjct: 305 PV 306
>UNIPROTKB|F1M911 [details] [associations]
symbol:F1M911 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004519 "endonuclease activity" evidence=IEA] [GO:0005622
"intracellular" evidence=IEA] [GO:0006281 "DNA repair"
evidence=IEA] InterPro:IPR004808 InterPro:IPR020847 PROSITE:PS00726
PROSITE:PS51435 Pfam:PF03372 GO:GO:0003677 GO:GO:0006281
GO:GO:0005622 GO:GO:0090305 GO:GO:0004519 InterPro:IPR005135
SUPFAM:SSF56219 PANTHER:PTHR22748 TIGRFAMs:TIGR00633
IPI:IPI00777317 Ensembl:ENSRNOT00000055391 Uniprot:F1M911
Length = 278
Score = 112 (44.5 bits), Expect = 0.00011, Sum P(2) = 0.00011
Identities = 42/137 (30%), Positives = 71/137 (51%)
Query: 14 NNSSVFHFLLSALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQE 73
++ S+ F+ A +++ + R++ AE + + TY PN G +Q+ WD+ +
Sbjct: 113 HSKSLLAFIGEA-EHDQEDRIV-AELASCVI--TYVPNAGRSLVRLEYQQC--WDEAFCK 166
Query: 74 FVLQCSGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRF 133
F+ KPL+ CG+LNV+HEEI + +P+ G NK++ FT ER+ F
Sbjct: 167 FLK----KPLVLCGNLNVTHEEIYLCNPK--------G----NKKN---ADFTPQERQGF 207
Query: 134 GAILKEGRLIDAYRFLH 150
G +L+ L D R L+
Sbjct: 208 GELLQAVPLADNLRHLY 224
Score = 37 (18.1 bits), Expect = 0.00011, Sum P(2) = 0.00011
Identities = 5/6 (83%), Positives = 6/6 (100%)
Query: 207 SDHCPV 212
SDHCP+
Sbjct: 267 SDHCPI 272
>UNIPROTKB|F1M909 [details] [associations]
symbol:F1M909 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004519 "endonuclease activity" evidence=IEA] [GO:0005622
"intracellular" evidence=IEA] [GO:0006281 "DNA repair"
evidence=IEA] InterPro:IPR004808 InterPro:IPR020847 PROSITE:PS00726
PROSITE:PS51435 Pfam:PF03372 GO:GO:0003677 GO:GO:0006281
GO:GO:0005622 GO:GO:0090305 GO:GO:0004519 InterPro:IPR005135
SUPFAM:SSF56219 PANTHER:PTHR22748 TIGRFAMs:TIGR00633
IPI:IPI00779020 Ensembl:ENSRNOT00000055393 Uniprot:F1M909
Length = 292
Score = 112 (44.5 bits), Expect = 0.00013, Sum P(2) = 0.00013
Identities = 42/137 (30%), Positives = 71/137 (51%)
Query: 14 NNSSVFHFLLSALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQE 73
++ S+ F+ A +++ + R++ AE + + TY PN G +Q+ WD+ +
Sbjct: 130 HSKSLLAFIGEA-EHDQEDRIV-AELASCVI--TYVPNAGRSLVRLEYQQC--WDEAFCK 183
Query: 74 FVLQCSGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRF 133
F+ KPL+ CG+LNV+HEEI + +P+ G NK++ FT ER+ F
Sbjct: 184 FLK----KPLVLCGNLNVTHEEIYLCNPK--------G----NKKN---ADFTPQERQGF 224
Query: 134 GAILKEGRLIDAYRFLH 150
G +L+ L D R L+
Sbjct: 225 GELLQAVPLADNLRHLY 241
Score = 37 (18.1 bits), Expect = 0.00013, Sum P(2) = 0.00013
Identities = 5/6 (83%), Positives = 6/6 (100%)
Query: 207 SDHCPV 212
SDHCP+
Sbjct: 281 SDHCPI 286
>UNIPROTKB|F1M910 [details] [associations]
symbol:F1M910 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004519 "endonuclease activity" evidence=IEA] [GO:0005622
"intracellular" evidence=IEA] [GO:0006281 "DNA repair"
evidence=IEA] InterPro:IPR004808 InterPro:IPR020847 PROSITE:PS00726
PROSITE:PS51435 Pfam:PF03372 GO:GO:0003677 GO:GO:0006281
GO:GO:0005622 GO:GO:0090305 GO:GO:0004519 InterPro:IPR005135
SUPFAM:SSF56219 PANTHER:PTHR22748 TIGRFAMs:TIGR00633
IPI:IPI00781547 Ensembl:ENSRNOT00000055392 Uniprot:F1M910
Length = 294
Score = 112 (44.5 bits), Expect = 0.00013, Sum P(2) = 0.00013
Identities = 42/137 (30%), Positives = 71/137 (51%)
Query: 14 NNSSVFHFLLSALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQE 73
++ S+ F+ A +++ + R++ AE + + TY PN G +Q+ WD+ +
Sbjct: 132 HSKSLLAFIGEA-EHDQEDRIV-AELASCVI--TYVPNAGRSLVRLEYQQC--WDEAFCK 185
Query: 74 FVLQCSGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRF 133
F+ KPL+ CG+LNV+HEEI + +P+ G NK++ FT ER+ F
Sbjct: 186 FLK----KPLVLCGNLNVTHEEIYLCNPK--------G----NKKN---ADFTPQERQGF 226
Query: 134 GAILKEGRLIDAYRFLH 150
G +L+ L D R L+
Sbjct: 227 GELLQAVPLADNLRHLY 243
Score = 37 (18.1 bits), Expect = 0.00013, Sum P(2) = 0.00013
Identities = 5/6 (83%), Positives = 6/6 (100%)
Query: 207 SDHCPV 212
SDHCP+
Sbjct: 283 SDHCPI 288
>UNIPROTKB|F1RUD3 [details] [associations]
symbol:LOC100519003 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0005743 "mitochondrial inner membrane"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0008270 "zinc
ion binding" evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA]
[GO:0004519 "endonuclease activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR004808 InterPro:IPR010666
InterPro:IPR020847 Pfam:PF06839 PROSITE:PS00726 PROSITE:PS51435
Pfam:PF03372 GO:GO:0005634 GO:GO:0005743 GO:GO:0003677
GO:GO:0008270 GO:GO:0006281 GO:GO:0090305 GO:GO:0004519
InterPro:IPR005135 SUPFAM:SSF56219 PANTHER:PTHR22748
TIGRFAMs:TIGR00633 GeneTree:ENSGT00530000063540 KO:K10772
OMA:FIDSYRC EMBL:CU856438 RefSeq:XP_003135157.1
Ensembl:ENSSSCT00000013503 GeneID:100519003 KEGG:ssc:100519003
Uniprot:F1RUD3
Length = 515
Score = 117 (46.2 bits), Expect = 0.00020, P = 0.00020
Identities = 50/172 (29%), Positives = 73/172 (42%)
Query: 44 LLNTYAPN-NGWKEEENSFQRRRKWDKRIQEFVLQCSGKPLIWCGDLNVSHEEIDVSHPE 102
++N Y P+ + K E +F+ R +I+ L +G +I GDLN +H ID H
Sbjct: 152 VINVYCPHADPGKPERLTFKMRFYHLLQIRAEALLAAGSHVIILGDLNTAHRPID--H-- 207
Query: 103 FFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLH-KEKD-MDCGFS 160
+ A L + W G R + G+ + G ID+YR+ K+K C
Sbjct: 208 -WDAVNLECFEEDPGRKW-MDGLLSNLRCQAGSHM--GPFIDSYRYFQPKQKGAFTC--- 260
Query: 161 WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPV 212
WS ++ RIDY L DR + + L GSDHCPV
Sbjct: 261 WSTVTGARHLNYGSRIDYV-----LGDRALVMDTFQSSFVLPEVMGSDHCPV 307
>TIGR_CMR|CBU_0297 [details] [associations]
symbol:CBU_0297 "exodeoxyribonuclease III" species:227377
"Coxiella burnetii RSA 493" [GO:0006281 "DNA repair" evidence=ISS]
[GO:0008853 "exodeoxyribonuclease III activity" evidence=ISS]
InterPro:IPR004808 InterPro:IPR020847 PROSITE:PS00726
PROSITE:PS51435 Pfam:PF03372 GO:GO:0003677 GO:GO:0006281
GO:GO:0005622 EMBL:AE016828 GenomeReviews:AE016828_GR GO:GO:0090305
GO:GO:0004519 InterPro:IPR005135 SUPFAM:SSF56219 PANTHER:PTHR22748
TIGRFAMs:TIGR00633 HOGENOM:HOG000034586 KO:K01142 GO:GO:0008853
HSSP:P27695 OMA:ADVFCIQ RefSeq:NP_819340.1
ProteinModelPortal:Q83EM1 PRIDE:Q83EM1 GeneID:1208179
KEGG:cbu:CBU_0297 PATRIC:17929289 ProtClustDB:CLSK913965
BioCyc:CBUR227377:GJ7S-304-MONOMER Uniprot:Q83EM1
Length = 259
Score = 111 (44.1 bits), Expect = 0.00029, P = 0.00029
Identities = 41/148 (27%), Positives = 71/148 (47%)
Query: 29 EPDGRVILAEFETFYLLNTYAPNN--GWKEEENSFQRRRKWDKRIQEFVLQCSGKPLIWC 86
+ +GR I A+F + + + Y P+ G ++ F ++ KR++ V S + I C
Sbjct: 89 DKEGRYIQADFGSLSVASLYMPSGTTGEHRQKIKFDFMDRYMKRLKNIVH--SKRSFIIC 146
Query: 87 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 146
GD N+ H+EID+ + F + K +G +P + W FT K G L+DA+
Sbjct: 147 GDWNIVHKEIDIKN--FKSNQKYSGCLPEERA-WLDEVFT-----------KVG-LVDAF 191
Query: 147 RFLHKEKDMDCGFSWSGNPIGKYRGKRM 174
R ++++ D +S G K G R+
Sbjct: 192 RVVNQKPDQYTWWSSRGRAWEKNVGWRI 219
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.323 0.142 0.458 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 233 221 0.00095 112 3 11 22 0.36 33
32 0.40 36
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 34
No. of states in DFA: 616 (65 KB)
Total size of DFA: 214 KB (2118 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 18.17u 0.16s 18.33t Elapsed: 00:00:01
Total cpu time: 18.18u 0.16s 18.34t Elapsed: 00:00:01
Start: Sat May 11 05:34:23 2013 End: Sat May 11 05:34:24 2013