BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 026782
(233 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|224133800|ref|XP_002321664.1| predicted protein [Populus trichocarpa]
gi|222868660|gb|EEF05791.1| predicted protein [Populus trichocarpa]
Length = 366
Score = 370 bits (949), Expect = e-100, Method: Compositional matrix adjust.
Identities = 176/217 (81%), Positives = 190/217 (87%)
Query: 7 LFYVCLCNNSSVFHFLLSALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRK 66
L C F +A K+EPDGRVILAEF+TF LLNTYAPNNGWKEEE SFQRRRK
Sbjct: 147 LVKKCFQPVKVSFALDQTASKHEPDGRVILAEFKTFRLLNTYAPNNGWKEEEKSFQRRRK 206
Query: 67 WDKRIQEFVLQCSGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFT 126
WDKR+ E V+Q S KPLIWCGDLNVSHEEIDVSHPEFF+AAK+NGYVPPNKED GQPGFT
Sbjct: 207 WDKRMLEVVVQLSDKPLIWCGDLNVSHEEIDVSHPEFFSAAKVNGYVPPNKEDCGQPGFT 266
Query: 127 IAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELK 186
++ERKRFGAILKEG+LIDAYRFLHKE+DM+ GFSWSGNPIGKYRGKRMRID+FIVSE+LK
Sbjct: 267 LSERKRFGAILKEGKLIDAYRFLHKERDMERGFSWSGNPIGKYRGKRMRIDFFIVSEKLK 326
Query: 187 DRIIACEMQGHGIELEGFYGSDHCPVSLELSEASSDS 223
DRII CEM GHGIELEGFYGSDHCPVSLELS AS DS
Sbjct: 327 DRIIQCEMHGHGIELEGFYGSDHCPVSLELSPASPDS 363
>gi|297816036|ref|XP_002875901.1| hypothetical protein ARALYDRAFT_347932 [Arabidopsis lyrata subsp.
lyrata]
gi|297321739|gb|EFH52160.1| hypothetical protein ARALYDRAFT_347932 [Arabidopsis lyrata subsp.
lyrata]
Length = 684
Score = 360 bits (925), Expect = 2e-97, Method: Compositional matrix adjust.
Identities = 168/224 (75%), Positives = 191/224 (85%)
Query: 7 LFYVCLCNNSSVFHFLLSALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRK 66
L C F+ A K+EPDGRVILAEFETF LLNTY+PNNGWKEEENSFQRRRK
Sbjct: 461 LVKKCFKPKKVYFNLDKLASKHEPDGRVILAEFETFRLLNTYSPNNGWKEEENSFQRRRK 520
Query: 67 WDKRIQEFVLQCSGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFT 126
WDKRI EF+ + S KPLIWCGDLNVSHEEIDVSHPEFFA AKLNGYVPPNKED GQPGFT
Sbjct: 521 WDKRIVEFLNKTSDKPLIWCGDLNVSHEEIDVSHPEFFATAKLNGYVPPNKEDCGQPGFT 580
Query: 127 IAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELK 186
+ER+RFG +KEG L+DAYR+LHKE+DM+ GFSWSGNPIGKYRGKRMRIDYF+VSE+LK
Sbjct: 581 PSERRRFGETMKEGMLVDAYRYLHKEQDMESGFSWSGNPIGKYRGKRMRIDYFLVSEQLK 640
Query: 187 DRIIACEMQGHGIELEGFYGSDHCPVSLELSEASSDSEKREKKN 230
DRI++C+M G GIELEGFYGSDHCPV+LELS+ SS++E+ + N
Sbjct: 641 DRIVSCKMHGRGIELEGFYGSDHCPVTLELSKPSSETEQNQVSN 684
>gi|356508768|ref|XP_003523126.1| PREDICTED: exodeoxyribonuclease-like [Glycine max]
Length = 355
Score = 357 bits (917), Expect = 2e-96, Method: Compositional matrix adjust.
Identities = 165/215 (76%), Positives = 187/215 (86%)
Query: 7 LFYVCLCNNSSVFHFLLSALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRK 66
L C S VF+ A K+EPDGRVIL EFET LLNTY PNNGWKEE NSFQRRRK
Sbjct: 134 LVKKCFKPKSVVFNLDKLASKHEPDGRVILVEFETLRLLNTYVPNNGWKEEANSFQRRRK 193
Query: 67 WDKRIQEFVLQCSGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFT 126
WDKRI EFV Q S KPLIWCGDLNVSHEEIDVSHP+FF+ AKLNGY+PPNKED GQPGFT
Sbjct: 194 WDKRILEFVTQSSDKPLIWCGDLNVSHEEIDVSHPDFFSVAKLNGYIPPNKEDCGQPGFT 253
Query: 127 IAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELK 186
++ERKRFG IL+EG+L+DAYRFLH++KDM+ GFSWSGNP+G+YRGKRMRIDYF+VSE+LK
Sbjct: 254 LSERKRFGTILREGKLVDAYRFLHEDKDMERGFSWSGNPVGRYRGKRMRIDYFLVSEKLK 313
Query: 187 DRIIACEMQGHGIELEGFYGSDHCPVSLELSEASS 221
+RI ACEM+GHGIELEGFYGSDHCPV+LELS +S+
Sbjct: 314 ERIAACEMRGHGIELEGFYGSDHCPVTLELSPSSN 348
>gi|225456791|ref|XP_002277389.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase [Vitis
vinifera]
gi|297733638|emb|CBI14885.3| unnamed protein product [Vitis vinifera]
Length = 357
Score = 357 bits (916), Expect = 2e-96, Method: Compositional matrix adjust.
Identities = 168/215 (78%), Positives = 184/215 (85%)
Query: 11 CLCNNSSVFHFLLSALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKR 70
C F A K+EP+GRVILAEFE+F LLNTY PNNGWK+EE SFQRRRKWDKR
Sbjct: 142 CFQPKKVSFSIDQKASKHEPEGRVILAEFESFRLLNTYVPNNGWKDEETSFQRRRKWDKR 201
Query: 71 IQEFVLQCSGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAER 130
+ EFV+Q S KPLIWCGDLNVSHEEIDVSHPEFF+AAK NGYVPPNKED GQPGFT+AER
Sbjct: 202 MLEFVVQSSDKPLIWCGDLNVSHEEIDVSHPEFFSAAKHNGYVPPNKEDCGQPGFTLAER 261
Query: 131 KRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRII 190
+RFG ILKEG+L+DAYR LHKEKDM+ GFSWSGNPIGKYRGKRMRIDYFIV E LKDRI+
Sbjct: 262 RRFGGILKEGKLVDAYRLLHKEKDMEGGFSWSGNPIGKYRGKRMRIDYFIVPEALKDRIV 321
Query: 191 ACEMQGHGIELEGFYGSDHCPVSLELSEASSDSEK 225
ACE+ G GIEL+GFYGSDHCPVSLELSE SS S +
Sbjct: 322 ACEIHGQGIELKGFYGSDHCPVSLELSETSSGSNQ 356
>gi|4678346|emb|CAB41156.1| putative protein [Arabidopsis thaliana]
Length = 686
Score = 356 bits (914), Expect = 4e-96, Method: Compositional matrix adjust.
Identities = 166/224 (74%), Positives = 191/224 (85%)
Query: 7 LFYVCLCNNSSVFHFLLSALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRK 66
L C F+ A K+EPDGRVILAEFETF LLNTY+PNNGWK+EEN+FQRRRK
Sbjct: 463 LVKKCFKPRKVYFNLDKLASKHEPDGRVILAEFETFRLLNTYSPNNGWKDEENAFQRRRK 522
Query: 67 WDKRIQEFVLQCSGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFT 126
WDKRI EF+ + S KPLIWCGDLNVSHEEIDVSHPEFFA AKLNGYVPPNKED GQPGFT
Sbjct: 523 WDKRIVEFLNKTSDKPLIWCGDLNVSHEEIDVSHPEFFATAKLNGYVPPNKEDCGQPGFT 582
Query: 127 IAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELK 186
+ER RFGA +KEGRL+DAYR+LHKE++M+ GFSWSGNPIGKYRGKRMRIDYF+VSE+LK
Sbjct: 583 PSERGRFGATIKEGRLVDAYRYLHKEQEMESGFSWSGNPIGKYRGKRMRIDYFLVSEQLK 642
Query: 187 DRIIACEMQGHGIELEGFYGSDHCPVSLELSEASSDSEKREKKN 230
DRI++C+M G GIELEGF+GSDHCPV+LELS+ SS+ E+ + N
Sbjct: 643 DRIVSCKMHGRGIELEGFHGSDHCPVTLELSKPSSEMEQNQVSN 686
>gi|42565714|ref|NP_566904.2| endonuclease/exonuclease/phosphatase domain-containing protein
[Arabidopsis thaliana]
gi|53828525|gb|AAU94372.1| At3g48425 [Arabidopsis thaliana]
gi|55733769|gb|AAV59281.1| At3g48425 [Arabidopsis thaliana]
gi|332644894|gb|AEE78415.1| endonuclease/exonuclease/phosphatase domain-containing protein
[Arabidopsis thaliana]
Length = 364
Score = 354 bits (909), Expect = 1e-95, Method: Compositional matrix adjust.
Identities = 166/224 (74%), Positives = 191/224 (85%)
Query: 7 LFYVCLCNNSSVFHFLLSALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRK 66
L C F+ A K+EPDGRVILAEFETF LLNTY+PNNGWK+EEN+FQRRRK
Sbjct: 141 LVKKCFKPRKVYFNLDKLASKHEPDGRVILAEFETFRLLNTYSPNNGWKDEENAFQRRRK 200
Query: 67 WDKRIQEFVLQCSGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFT 126
WDKRI EF+ + S KPLIWCGDLNVSHEEIDVSHPEFFA AKLNGYVPPNKED GQPGFT
Sbjct: 201 WDKRIVEFLNKTSDKPLIWCGDLNVSHEEIDVSHPEFFATAKLNGYVPPNKEDCGQPGFT 260
Query: 127 IAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELK 186
+ER RFGA +KEGRL+DAYR+LHKE++M+ GFSWSGNPIGKYRGKRMRIDYF+VSE+LK
Sbjct: 261 PSERGRFGATIKEGRLVDAYRYLHKEQEMESGFSWSGNPIGKYRGKRMRIDYFLVSEQLK 320
Query: 187 DRIIACEMQGHGIELEGFYGSDHCPVSLELSEASSDSEKREKKN 230
DRI++C+M G GIELEGF+GSDHCPV+LELS+ SS+ E+ + N
Sbjct: 321 DRIVSCKMHGRGIELEGFHGSDHCPVTLELSKPSSEMEQNQVSN 364
>gi|358348989|ref|XP_003638523.1| DNA-(apurinic or apyrimidinic site) lyase [Medicago truncatula]
gi|355504458|gb|AES85661.1| DNA-(apurinic or apyrimidinic site) lyase [Medicago truncatula]
Length = 367
Score = 352 bits (904), Expect = 5e-95, Method: Compositional matrix adjust.
Identities = 164/211 (77%), Positives = 183/211 (86%)
Query: 11 CLCNNSSVFHFLLSALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKR 70
C S VF+ A K+EPDGRVIL EFET LLNTY PNNGWKEE NSFQRRRKWDKR
Sbjct: 150 CFKPKSVVFNLDKIASKHEPDGRVILVEFETLRLLNTYVPNNGWKEEPNSFQRRRKWDKR 209
Query: 71 IQEFVLQCSGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAER 130
I EFV Q S KPLIWCGDLNVSHEEIDVS PEFF+ AKLNGYVPPNKED+GQPGFT+AER
Sbjct: 210 ILEFVNQNSDKPLIWCGDLNVSHEEIDVSQPEFFSTAKLNGYVPPNKEDYGQPGFTLAER 269
Query: 131 KRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRII 190
RFG IL+EG+L+DAYRFLHK+KDM+ GFSWSGNPIG+YRGKRMRIDYFIVSE++K++I
Sbjct: 270 ARFGTILREGKLVDAYRFLHKDKDMEQGFSWSGNPIGRYRGKRMRIDYFIVSEKIKEKIA 329
Query: 191 ACEMQGHGIELEGFYGSDHCPVSLELSEASS 221
ACEM G GIEL+GFYGSDHCPV+LELS +S+
Sbjct: 330 ACEMHGKGIELQGFYGSDHCPVTLELSPSSN 360
>gi|449487730|ref|XP_004157772.1| PREDICTED: LOW QUALITY PROTEIN: DNA-(apurinic or apyrimidinic site)
lyase-like [Cucumis sativus]
Length = 361
Score = 351 bits (901), Expect = 1e-94, Method: Compositional matrix adjust.
Identities = 166/211 (78%), Positives = 184/211 (87%)
Query: 11 CLCNNSSVFHFLLSALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKR 70
C F+ A K+E DGRVILAEFETF LLNTY+PNNGWKEEE SF+RRRKWDKR
Sbjct: 144 CFQPKKVXFNLDRIASKHEVDGRVILAEFETFRLLNTYSPNNGWKEEEKSFKRRRKWDKR 203
Query: 71 IQEFVLQCSGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAER 130
+ EFV+Q S KPLIWCGDLNVSHEEIDVSHP+FF+AAKLNGY+PPNKED GQPGFT+AER
Sbjct: 204 MLEFVIQSSDKPLIWCGDLNVSHEEIDVSHPDFFSAAKLNGYIPPNKEDCGQPGFTLAER 263
Query: 131 KRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRII 190
RF AILKEG+LIDA+RFLHKEKDM+ GFSWSG+PIGKYRGKRMRIDYF+VSE L RI+
Sbjct: 264 NRFNAILKEGKLIDAHRFLHKEKDMERGFSWSGHPIGKYRGKRMRIDYFLVSESLVGRIV 323
Query: 191 ACEMQGHGIELEGFYGSDHCPVSLELSEASS 221
+CEM G GIEL+GFYGSDHCPVSLELSEASS
Sbjct: 324 SCEMHGQGIELKGFYGSDHCPVSLELSEASS 354
>gi|449469598|ref|XP_004152506.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase-like [Cucumis
sativus]
Length = 361
Score = 351 bits (900), Expect = 1e-94, Method: Compositional matrix adjust.
Identities = 166/211 (78%), Positives = 184/211 (87%)
Query: 11 CLCNNSSVFHFLLSALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKR 70
C F+ A K+E DGRVILAEFETF LLNTY+PNNGWKEEE SF+RRRKWDKR
Sbjct: 144 CFQPKKVFFNLDRIASKHEVDGRVILAEFETFRLLNTYSPNNGWKEEEKSFKRRRKWDKR 203
Query: 71 IQEFVLQCSGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAER 130
+ EFV+Q S KPLIWCGDLNVSHEEIDVSHP+FF+AAKLNGY+PPNKED GQPGFT+AER
Sbjct: 204 MLEFVIQSSDKPLIWCGDLNVSHEEIDVSHPDFFSAAKLNGYIPPNKEDCGQPGFTLAER 263
Query: 131 KRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRII 190
RF AILKEG+LIDA+RFLHKEKDM+ GFSWSG+PIGKYRGKRMRIDYF+VSE L RI+
Sbjct: 264 NRFNAILKEGKLIDAHRFLHKEKDMERGFSWSGHPIGKYRGKRMRIDYFLVSESLVGRIV 323
Query: 191 ACEMQGHGIELEGFYGSDHCPVSLELSEASS 221
+CEM G GIEL+GFYGSDHCPVSLELSEASS
Sbjct: 324 SCEMHGQGIELKGFYGSDHCPVSLELSEASS 354
>gi|115488172|ref|NP_001066573.1| Os12g0279600 [Oryza sativa Japonica Group]
gi|77554323|gb|ABA97119.1| exodeoxyribonuclease III family protein, expressed [Oryza sativa
Japonica Group]
gi|113649080|dbj|BAF29592.1| Os12g0279600 [Oryza sativa Japonica Group]
gi|215687325|dbj|BAG91875.1| unnamed protein product [Oryza sativa Japonica Group]
gi|222616909|gb|EEE53041.1| hypothetical protein OsJ_35763 [Oryza sativa Japonica Group]
Length = 379
Score = 348 bits (893), Expect = 1e-93, Method: Compositional matrix adjust.
Identities = 159/200 (79%), Positives = 185/200 (92%), Gaps = 1/200 (0%)
Query: 19 FHFLLSALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC 78
F+ ++ K+EPDGRVI+AEFE+F LLNTYAPNNGWKEEENSFQRRRKWDKR+ EFV Q
Sbjct: 170 FNLDRTSSKHEPDGRVIIAEFESFLLLNTYAPNNGWKEEENSFQRRRKWDKRMLEFVQQV 229
Query: 79 SGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILK 138
KPLIWCGDLNVSHEEIDVSHP+FF++AKLNGY+PPNKED GQPGFT++ER+RFG IL
Sbjct: 230 D-KPLIWCGDLNVSHEEIDVSHPDFFSSAKLNGYIPPNKEDCGQPGFTLSERRRFGNILS 288
Query: 139 EGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHG 198
+G+L+DAYR+LHKEKDMDCGFSWSG+PIGKYRGKRMRIDYF+VSE+LKD+I++C++ G G
Sbjct: 289 QGKLVDAYRYLHKEKDMDCGFSWSGHPIGKYRGKRMRIDYFLVSEKLKDQIVSCDIHGRG 348
Query: 199 IELEGFYGSDHCPVSLELSE 218
IELEGFYGSDHCPVSLELSE
Sbjct: 349 IELEGFYGSDHCPVSLELSE 368
>gi|326511341|dbj|BAJ87684.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 306
Score = 347 bits (891), Expect = 2e-93, Method: Compositional matrix adjust.
Identities = 159/205 (77%), Positives = 185/205 (90%), Gaps = 1/205 (0%)
Query: 19 FHFLLSALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC 78
F+ ++ K++ DGRVI+ EFE+F LLNTYAPNNGWKEEENSFQRRRKWDKR+ EFV Q
Sbjct: 96 FNLDRTSSKHDADGRVIIVEFESFLLLNTYAPNNGWKEEENSFQRRRKWDKRMLEFVQQV 155
Query: 79 SGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILK 138
KPLIWCGDLNVSH EIDVSHP+FF+ AKLNGY+PPNKED GQPGFT+AER+RFG IL
Sbjct: 156 D-KPLIWCGDLNVSHGEIDVSHPDFFSDAKLNGYIPPNKEDCGQPGFTLAERQRFGNILS 214
Query: 139 EGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHG 198
+G+L+DAYR+LHKEKDM+CGFSWSGNPIGKYRGKRMRIDYF+VSE LKDRI++CEM GHG
Sbjct: 215 QGKLVDAYRYLHKEKDMECGFSWSGNPIGKYRGKRMRIDYFVVSEGLKDRIVSCEMHGHG 274
Query: 199 IELEGFYGSDHCPVSLELSEASSDS 223
IELEGFYGSDHCPVSLELS+ ++++
Sbjct: 275 IELEGFYGSDHCPVSLELSKEAAEA 299
>gi|357160291|ref|XP_003578718.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase-like
[Brachypodium distachyon]
Length = 369
Score = 344 bits (883), Expect = 1e-92, Method: Compositional matrix adjust.
Identities = 158/205 (77%), Positives = 184/205 (89%), Gaps = 1/205 (0%)
Query: 19 FHFLLSALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC 78
F+ ++ K+E DGRVI+ EFE+ LLNTYAPNNGWKEEENSFQRRRKWDKR+ EFV Q
Sbjct: 159 FNLDRTSSKHESDGRVIIVEFESLLLLNTYAPNNGWKEEENSFQRRRKWDKRMFEFVQQV 218
Query: 79 SGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILK 138
KP IWCGDLNVSHEEIDVSHP+FF++AKLNGY+PPNKED GQPGFT+AER+RFG IL
Sbjct: 219 D-KPFIWCGDLNVSHEEIDVSHPDFFSSAKLNGYIPPNKEDCGQPGFTLAERQRFGNILS 277
Query: 139 EGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHG 198
+G+L+DAYR LHKEKDM+CGFSWSGNPIGKYRGKRMRIDYFIVSE LKDR+++CE+ GHG
Sbjct: 278 QGKLVDAYRHLHKEKDMECGFSWSGNPIGKYRGKRMRIDYFIVSERLKDRLVSCEIHGHG 337
Query: 199 IELEGFYGSDHCPVSLELSEASSDS 223
IELEGFYGSDHCPVSLELS+ ++++
Sbjct: 338 IELEGFYGSDHCPVSLELSKDAAEA 362
>gi|242078097|ref|XP_002443817.1| hypothetical protein SORBIDRAFT_07g002730 [Sorghum bicolor]
gi|241940167|gb|EES13312.1| hypothetical protein SORBIDRAFT_07g002730 [Sorghum bicolor]
Length = 369
Score = 342 bits (876), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 159/211 (75%), Positives = 186/211 (88%), Gaps = 1/211 (0%)
Query: 19 FHFLLSALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC 78
F+ ++ K+E DGRVI+AEFE+F LLNTYAPNNGWKEEENSFQRRRKWDKR+ EFV Q
Sbjct: 159 FNLDRTSSKHETDGRVIIAEFESFLLLNTYAPNNGWKEEENSFQRRRKWDKRMLEFV-QH 217
Query: 79 SGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILK 138
KPLIWCGDLNVSHEEIDVSHP+FF++AKLNGY PPN+ED GQPGFT AER+RFG IL
Sbjct: 218 VDKPLIWCGDLNVSHEEIDVSHPDFFSSAKLNGYTPPNQEDCGQPGFTPAERRRFGNILF 277
Query: 139 EGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHG 198
+G+L+DAYR LHKEKDMD GFSWSG+PIGKYRGKRMRIDYF+VSE+LKDRI++CEM G G
Sbjct: 278 QGKLVDAYRHLHKEKDMDGGFSWSGHPIGKYRGKRMRIDYFLVSEQLKDRIVSCEMHGRG 337
Query: 199 IELEGFYGSDHCPVSLELSEASSDSEKREKK 229
IEL+GFYGSDHCPV+LELS+A +++ + K
Sbjct: 338 IELDGFYGSDHCPVTLELSKAVAEAAPEQPK 368
>gi|226531290|ref|NP_001144669.1| uncharacterized protein LOC100277695 [Zea mays]
gi|195645474|gb|ACG42205.1| hypothetical protein [Zea mays]
gi|238007716|gb|ACR34893.1| unknown [Zea mays]
gi|413917521|gb|AFW57453.1| hypothetical protein ZEAMMB73_666233 [Zea mays]
Length = 373
Score = 338 bits (867), Expect = 1e-90, Method: Compositional matrix adjust.
Identities = 159/211 (75%), Positives = 185/211 (87%), Gaps = 1/211 (0%)
Query: 19 FHFLLSALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC 78
F+ ++ K+E DGRVI+AEFE+F LLNTY+PNNGWKEEEN+FQRRRKWDKR+ EFV Q
Sbjct: 161 FNLDRTSSKHEADGRVIIAEFESFLLLNTYSPNNGWKEEENAFQRRRKWDKRMLEFV-QH 219
Query: 79 SGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILK 138
KPLIWCGDLNVSHEEIDVSHP+FF++AKLNGY PPNKED GQPGFT AER+RFG IL
Sbjct: 220 VDKPLIWCGDLNVSHEEIDVSHPDFFSSAKLNGYTPPNKEDCGQPGFTPAERRRFGNILF 279
Query: 139 EGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHG 198
+G+L+DAYR LHKEKD+D GFSWSG+PIGKYRGKRMRIDYF+VSE+LKDRI++CEM G G
Sbjct: 280 QGKLVDAYRHLHKEKDIDGGFSWSGHPIGKYRGKRMRIDYFLVSEQLKDRIVSCEMHGRG 339
Query: 199 IELEGFYGSDHCPVSLELSEASSDSEKREKK 229
IEL+GFYGSDHCPVSLELSEA ++ + K
Sbjct: 340 IELDGFYGSDHCPVSLELSEAVAEEAPGQPK 370
>gi|46200513|gb|AAL73527.2|AF466200_6 putative AP endonuclease [Sorghum bicolor]
Length = 348
Score = 331 bits (848), Expect = 2e-88, Method: Compositional matrix adjust.
Identities = 158/221 (71%), Positives = 186/221 (84%), Gaps = 11/221 (4%)
Query: 19 FHFLLSALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC 78
F+ ++ K+E DGRVI+AEFE+F LLNTYAPNNGWKEEENSFQRRRKWDKR+ EFV Q
Sbjct: 128 FNLDRTSSKHETDGRVIIAEFESFLLLNTYAPNNGWKEEENSFQRRRKWDKRMLEFV-QH 186
Query: 79 SGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILK 138
KPLIWCGDLNVSHEEIDVSHP+FF++AKLNGY PPN+ED GQPGFT AER+RFG IL
Sbjct: 187 VDKPLIWCGDLNVSHEEIDVSHPDFFSSAKLNGYTPPNQEDCGQPGFTPAERRRFGNILF 246
Query: 139 EGRLIDAYRFLHKEKDMDCGFSWSGNPIG----------KYRGKRMRIDYFIVSEELKDR 188
+G+L+DAYR LHKEKDMD GFSWSG+PIG +YRGKRMRIDYF+VSE+LKDR
Sbjct: 247 QGKLVDAYRHLHKEKDMDGGFSWSGHPIGNEINFSAYSSRYRGKRMRIDYFLVSEQLKDR 306
Query: 189 IIACEMQGHGIELEGFYGSDHCPVSLELSEASSDSEKREKK 229
I++CEM G GIEL+GFYGSDHCPV+LELS+A +++ + K
Sbjct: 307 IVSCEMHGRGIELDGFYGSDHCPVTLELSKAVAEAAPEQPK 347
>gi|413917522|gb|AFW57454.1| hypothetical protein ZEAMMB73_666233 [Zea mays]
Length = 383
Score = 330 bits (845), Expect = 4e-88, Method: Compositional matrix adjust.
Identities = 158/221 (71%), Positives = 185/221 (83%), Gaps = 11/221 (4%)
Query: 19 FHFLLSALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC 78
F+ ++ K+E DGRVI+AEFE+F LLNTY+PNNGWKEEEN+FQRRRKWDKR+ EFV Q
Sbjct: 161 FNLDRTSSKHEADGRVIIAEFESFLLLNTYSPNNGWKEEENAFQRRRKWDKRMLEFV-QH 219
Query: 79 SGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILK 138
KPLIWCGDLNVSHEEIDVSHP+FF++AKLNGY PPNKED GQPGFT AER+RFG IL
Sbjct: 220 VDKPLIWCGDLNVSHEEIDVSHPDFFSSAKLNGYTPPNKEDCGQPGFTPAERRRFGNILF 279
Query: 139 EGRLIDAYRFLHKEKDMDCGFSWSGNPIG----------KYRGKRMRIDYFIVSEELKDR 188
+G+L+DAYR LHKEKD+D GFSWSG+PIG +YRGKRMRIDYF+VSE+LKDR
Sbjct: 280 QGKLVDAYRHLHKEKDIDGGFSWSGHPIGNEINFSAYASRYRGKRMRIDYFLVSEQLKDR 339
Query: 189 IIACEMQGHGIELEGFYGSDHCPVSLELSEASSDSEKREKK 229
I++CEM G GIEL+GFYGSDHCPVSLELSEA ++ + K
Sbjct: 340 IVSCEMHGRGIELDGFYGSDHCPVSLELSEAVAEEAPGQPK 380
>gi|302823174|ref|XP_002993241.1| hypothetical protein SELMODRAFT_187330 [Selaginella moellendorffii]
gi|300138911|gb|EFJ05662.1| hypothetical protein SELMODRAFT_187330 [Selaginella moellendorffii]
Length = 351
Score = 291 bits (744), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 131/192 (68%), Positives = 158/192 (82%), Gaps = 1/192 (0%)
Query: 25 ALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGKPLI 84
A ++E DGR+ILAEF +F LLNTYAPNNGWKEEEN F RRR WDK++ EFV CS KPLI
Sbjct: 152 AQRHEIDGRIILAEFGSFTLLNTYAPNNGWKEEENGFVRRRAWDKKVLEFVSSCS-KPLI 210
Query: 85 WCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLID 144
WCGDLNVSH+EIDV+HPEFFA A GY PPNKED GQPGFT+ ER RF AIL G L+D
Sbjct: 211 WCGDLNVSHQEIDVTHPEFFANATQPGYTPPNKEDAGQPGFTLNERARFSAILNRGNLVD 270
Query: 145 AYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGF 204
YR LH+++D++ GF+WSGNP+GKYRGKRMRIDYF++S+ L R+ + ++ G GIELEGF
Sbjct: 271 TYRHLHEKQDLEAGFTWSGNPVGKYRGKRMRIDYFLISKALLPRLASSKIHGRGIELEGF 330
Query: 205 YGSDHCPVSLEL 216
GSDHCP+++EL
Sbjct: 331 LGSDHCPLTMEL 342
>gi|168031629|ref|XP_001768323.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162680501|gb|EDQ66937.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 369
Score = 290 bits (742), Expect = 4e-76, Method: Compositional matrix adjust.
Identities = 129/215 (60%), Positives = 165/215 (76%)
Query: 13 CNNSSVFHFLLSALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQ 72
C+ S+ + L LK+E DGRVILAEF +F LLNTY PNN WK+++N F RRR WD R+
Sbjct: 143 CSPISILYSLDDKLKHEADGRVILAEFHSFRLLNTYVPNNSWKDDDNGFARRRAWDARMI 202
Query: 73 EFVLQCSGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKR 132
EF+ + KPLIWCGDLNVS+E IDVSHP+FF+ AKL GY PPN ED GQPGFT+ ER+R
Sbjct: 203 EFLKRPHKKPLIWCGDLNVSNEVIDVSHPDFFSNAKLQGYTPPNAEDIGQPGFTLGERQR 262
Query: 133 FGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIAC 192
F L +G L+D YR LHK++D D GF+WSGNP+GKYRGKRMRIDYF++S +L DR+++
Sbjct: 263 FAECLSKGDLVDTYRHLHKQQDFDAGFTWSGNPVGKYRGKRMRIDYFLLSRKLLDRLVSS 322
Query: 193 EMQGHGIELEGFYGSDHCPVSLELSEASSDSEKRE 227
++ G GIE EGF GSDHCP+++E+ A+ + K E
Sbjct: 323 DIHGQGIEQEGFCGSDHCPITMEIRTATKEIAKVE 357
>gi|302824275|ref|XP_002993782.1| hypothetical protein SELMODRAFT_137611 [Selaginella moellendorffii]
gi|300138378|gb|EFJ05148.1| hypothetical protein SELMODRAFT_137611 [Selaginella moellendorffii]
Length = 351
Score = 290 bits (741), Expect = 4e-76, Method: Compositional matrix adjust.
Identities = 130/192 (67%), Positives = 157/192 (81%), Gaps = 1/192 (0%)
Query: 25 ALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGKPLI 84
A ++E DGR+ILAEF +F LLNTYAPNNGWKEEEN F RRR WDK++ EFV CS KPLI
Sbjct: 152 AQRHEIDGRIILAEFGSFTLLNTYAPNNGWKEEENGFVRRRAWDKKVLEFVSSCS-KPLI 210
Query: 85 WCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLID 144
WCGDLNVSH+EIDV+HPEFFA A GY PPNKED GQPGFT+ ER RF IL G L+D
Sbjct: 211 WCGDLNVSHQEIDVTHPEFFANATQPGYTPPNKEDAGQPGFTLNERARFSTILNRGNLVD 270
Query: 145 AYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGF 204
YR LH+++D++ GF+WSGNP+GKYRGKRMRIDYF++S+ L R+ + ++ G GIELEGF
Sbjct: 271 TYRHLHEKQDLEAGFTWSGNPVGKYRGKRMRIDYFLISKALLPRLASSKIHGRGIELEGF 330
Query: 205 YGSDHCPVSLEL 216
GSDHCP+++EL
Sbjct: 331 LGSDHCPLTMEL 342
>gi|255540403|ref|XP_002511266.1| ap endonuclease, putative [Ricinus communis]
gi|223550381|gb|EEF51868.1| ap endonuclease, putative [Ricinus communis]
Length = 326
Score = 281 bits (720), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 132/161 (81%), Positives = 144/161 (89%)
Query: 63 RRRKWDKRIQEFVLQCSGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQ 122
R +K DKR+ EFV+Q S KPLIWCGDLNVSHEEIDVSHPEFF AAK NGYVPPNKED GQ
Sbjct: 163 REKKMDKRMLEFVVQLSDKPLIWCGDLNVSHEEIDVSHPEFFIAAKQNGYVPPNKEDCGQ 222
Query: 123 PGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVS 182
PGFT+ ERKRFG+IL+EG+LIDAYRFLHKEKDM+ GFSWSGNPIGKYRGKRMRIDYFIVS
Sbjct: 223 PGFTLNERKRFGSILREGKLIDAYRFLHKEKDMERGFSWSGNPIGKYRGKRMRIDYFIVS 282
Query: 183 EELKDRIIACEMQGHGIELEGFYGSDHCPVSLELSEASSDS 223
E+LK RII+CEM G GIEL+GFYGSDHCPVSLEL + DS
Sbjct: 283 EKLKGRIISCEMHGQGIELQGFYGSDHCPVSLELVPTTCDS 323
>gi|194695010|gb|ACF81589.1| unknown [Zea mays]
gi|413917519|gb|AFW57451.1| hypothetical protein ZEAMMB73_666233 [Zea mays]
Length = 161
Score = 254 bits (649), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 121/157 (77%), Positives = 138/157 (87%), Gaps = 1/157 (0%)
Query: 73 EFVLQCSGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKR 132
EFV Q KPLIWCGDLNVSHEEIDVSHP+FF++AKLNGY PPNKED GQPGFT AER+R
Sbjct: 3 EFV-QHVDKPLIWCGDLNVSHEEIDVSHPDFFSSAKLNGYTPPNKEDCGQPGFTPAERRR 61
Query: 133 FGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIAC 192
FG IL +G+L+DAYR LHKEKD+D GFSWSG+PIGKYRGKRMRIDYF+VSE+LKDRI++C
Sbjct: 62 FGNILFQGKLVDAYRHLHKEKDIDGGFSWSGHPIGKYRGKRMRIDYFLVSEQLKDRIVSC 121
Query: 193 EMQGHGIELEGFYGSDHCPVSLELSEASSDSEKREKK 229
EM G GIEL+GFYGSDHCPVSLELSEA ++ + K
Sbjct: 122 EMHGRGIELDGFYGSDHCPVSLELSEAVAEEAPGQPK 158
>gi|358348991|ref|XP_003638524.1| DNA-(apurinic or apyrimidinic site) lyase [Medicago truncatula]
gi|355504459|gb|AES85662.1| DNA-(apurinic or apyrimidinic site) lyase [Medicago truncatula]
Length = 278
Score = 210 bits (534), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 100/129 (77%), Positives = 106/129 (82%)
Query: 11 CLCNNSSVFHFLLSALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKR 70
C S VF+ A K+EPDGRVIL EFET LLNTY PNNGWKEE NSFQRRRKWDKR
Sbjct: 150 CFKPKSVVFNLDKIASKHEPDGRVILVEFETLRLLNTYVPNNGWKEEPNSFQRRRKWDKR 209
Query: 71 IQEFVLQCSGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAER 130
I EFV Q S KPLIWCGDLNVSHEEIDVS PEFF+ AKLNGYVPPNKED+GQPGFT+AER
Sbjct: 210 ILEFVNQNSDKPLIWCGDLNVSHEEIDVSQPEFFSTAKLNGYVPPNKEDYGQPGFTLAER 269
Query: 131 KRFGAILKE 139
RFG IL+E
Sbjct: 270 ARFGTILRE 278
>gi|148908559|gb|ABR17389.1| unknown [Picea sitchensis]
Length = 303
Score = 187 bits (475), Expect = 3e-45, Method: Compositional matrix adjust.
Identities = 84/116 (72%), Positives = 100/116 (86%)
Query: 24 SALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGKPL 83
SALK+E DGRVI+AEFE F LLN+Y PNNGWK++E F+RRRKWD+R+ +FVL S KPL
Sbjct: 171 SALKHEVDGRVIVAEFEGFRLLNSYVPNNGWKDDETGFRRRRKWDQRMLDFVLGVSDKPL 230
Query: 84 IWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKE 139
IWCGDLNVSH++IDVSHPEFF+ AK+ GY+PPNKED GQPGFTIAER+RF IL +
Sbjct: 231 IWCGDLNVSHQDIDVSHPEFFSNAKIAGYMPPNKEDCGQPGFTIAERRRFSTILSQ 286
>gi|218186665|gb|EEC69092.1| hypothetical protein OsI_37986 [Oryza sativa Indica Group]
Length = 470
Score = 182 bits (461), Expect = 1e-43, Method: Compositional matrix adjust.
Identities = 80/100 (80%), Positives = 95/100 (95%)
Query: 119 DWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDY 178
D GQPGFT++ER+RFG IL +G+L+DAYR+LHKEKDMDCGFSWSG+PIGKYRGKRMRIDY
Sbjct: 360 DCGQPGFTLSERRRFGNILSQGKLVDAYRYLHKEKDMDCGFSWSGHPIGKYRGKRMRIDY 419
Query: 179 FIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELSE 218
F+VSE+LKD+I++C++ G GIELEGFYGSDHCPVSLELSE
Sbjct: 420 FLVSEKLKDQIVSCDIHGRGIELEGFYGSDHCPVSLELSE 459
Score = 170 bits (431), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 79/100 (79%), Positives = 90/100 (90%), Gaps = 1/100 (1%)
Query: 19 FHFLLSALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC 78
F+ ++ K+EPDGRVI+AEFE+F LLNTYAPNNGWKEEENSFQRRRKWDKR+ EFV Q
Sbjct: 170 FNLDRTSSKHEPDGRVIIAEFESFLLLNTYAPNNGWKEEENSFQRRRKWDKRMLEFVQQV 229
Query: 79 SGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKE 118
KPLIWCGDLNVSHEEIDVSHP+FF++AKLNGY+PPNKE
Sbjct: 230 D-KPLIWCGDLNVSHEEIDVSHPDFFSSAKLNGYIPPNKE 268
>gi|255085372|ref|XP_002505117.1| predicted protein [Micromonas sp. RCC299]
gi|226520386|gb|ACO66375.1| predicted protein [Micromonas sp. RCC299]
Length = 418
Score = 168 bits (425), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 95/231 (41%), Positives = 122/231 (52%), Gaps = 43/231 (18%)
Query: 31 DGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG---------- 80
+GRV+L EF +F LLNTYA NNGW +E SF +RR+WD + F+ +
Sbjct: 168 EGRVLLLEFRSFVLLNTYAQNNGWTQE--SFAKRRRWDAEVHAFIAGNTAGATPRPRFDD 225
Query: 81 ----------KPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGY-------VPPNKEDWGQP 123
KPL+W GDLNV H+EIDV+HP FFA K G P + D GQP
Sbjct: 226 SDLNATSRRFKPLMWTGDLNVCHKEIDVTHPRFFATQKPEGRKGKPPPETPTDPGDCGQP 285
Query: 124 GFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNP----IGKYRGKRMRIDYF 179
GFT ER RF ++ L+DAYR + D+ +W G+P +GKYRG MR+DYF
Sbjct: 286 GFTRNERTRFERLVTAHALVDAYR--RQRGDVKDAMTWMGHPGVVAVGKYRGMGMRLDYF 343
Query: 180 IVSEELKDRIIACEMQGHGIEL--------EGFYGSDHCPVSLELSEASSD 222
V EL +R+ CE G+ L F+GSDHC V L L + D
Sbjct: 344 FVETELANRVEVCEQATDGMGLAAMAERPASAFFGSDHCAVYLRLKDVPLD 394
>gi|70954382|ref|XP_746240.1| AP endonuclease (DNA-(apurinic or apyrimidinic site) lyase)
[Plasmodium chabaudi chabaudi]
gi|56526785|emb|CAH87963.1| AP endonuclease (DNA-(apurinic or apyrimidinic site) lyase),
putative [Plasmodium chabaudi chabaudi]
Length = 350
Score = 158 bits (400), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 94/204 (46%), Positives = 123/204 (60%), Gaps = 22/204 (10%)
Query: 31 DGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVL--QCSGKPLIWCGD 88
+GR+IL EF FYLL+TY+PNNG+ + F+RRR +D ++EFVL + K LIW GD
Sbjct: 153 EGRIILLEFSNFYLLSTYSPNNGF--DAPKFERRRLFDDSMKEFVLFMKKENKNLIWTGD 210
Query: 89 LNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRF 148
LN++ E+ID+SHP F K G VP KE GQPG T AERK F ILK G L+D+YR+
Sbjct: 211 LNIAPEDIDLSHPIEFRKMK-KGNVP--KEYIGQPGCTDAERKNFKTILKNGDLVDSYRY 267
Query: 149 LH------------KEKDMDCGFSWSGNP--IGKYRGKRMRIDYFIVSEELKDRIIACEM 194
K D ++W P IGK + MRID+FIVS+ L D+I E+
Sbjct: 268 FENYKIKNDPTYKKKTNINDNIYTWRC-PFLIGKSCNRAMRIDHFIVSKSLLDKIENVEI 326
Query: 195 QGHGIELEGFYGSDHCPVSLELSE 218
G+ + FYGSDHCPV L + +
Sbjct: 327 HGYSVSHTNFYGSDHCPVILNMKK 350
>gi|83314890|ref|XP_730557.1| AP endonuclease-related [Plasmodium yoelii yoelii 17XNL]
gi|23490314|gb|EAA22122.1| putative AP endonuclease-related [Plasmodium yoelii yoelii]
Length = 554
Score = 157 bits (398), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 91/207 (43%), Positives = 125/207 (60%), Gaps = 22/207 (10%)
Query: 28 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVL--QCSGKPLIW 85
+ +GR+IL EF FYLL+TY+PNNG+ ++ F RR+ +D++++ FVL + K LIW
Sbjct: 354 HNDEGRIILLEFSNFYLLSTYSPNNGF--DQIKFNRRKLYDEQMKNFVLFMKNENKNLIW 411
Query: 86 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 145
GDLN++ E+ID+SHP F K G VP KE GQPG T AER+ F ILK G L+D+
Sbjct: 412 TGDLNIAPEDIDLSHPIEFRKMK-KGNVP--KEYIGQPGCTDAERENFKTILKNGNLVDS 468
Query: 146 YRFLH------------KEKDMDCGFSWSGNP--IGKYRGKRMRIDYFIVSEELKDRIIA 191
YR+ K D ++W P IGK + MRID+FIVS+ L ++I
Sbjct: 469 YRYFENYKIKNDPTYKKKTNINDNIYTWRC-PFLIGKSCNRAMRIDHFIVSKNLLNQIEN 527
Query: 192 CEMQGHGIELEGFYGSDHCPVSLELSE 218
E+ G+ + FYGSDHCPV L + E
Sbjct: 528 VEIHGYSVSHTNFYGSDHCPVILNMKE 554
>gi|124504779|ref|XP_001351132.1| AP endonuclease (DNA-[apurinic or apyrimidinic site] lyase),
putative [Plasmodium falciparum 3D7]
gi|15375379|emb|CAB39006.2| AP endonuclease (DNA-[apurinic or apyrimidinic site] lyase),
putative [Plasmodium falciparum 3D7]
Length = 617
Score = 156 bits (395), Expect = 6e-36, Method: Compositional matrix adjust.
Identities = 93/208 (44%), Positives = 121/208 (58%), Gaps = 25/208 (12%)
Query: 28 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG---KPLI 84
+ +GRVIL EF F+LL+TY PNNG+ + F+RRR +D+++Q+FV KPL+
Sbjct: 413 HHDEGRVILVEFSNFFLLSTYTPNNGF--DHVKFERRRLFDEQLQKFVTILRNEKQKPLV 470
Query: 85 WCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLID 144
W GDLN++ E+ID+SHP F K G VP KE GQPG T ERK F IL G L+D
Sbjct: 471 WTGDLNIAPEDIDLSHPAEFRRMK-KGNVP--KEFIGQPGCTDFERKNFQKILTAGNLVD 527
Query: 145 AYRFL--------------HKEKDMDCGFSWSGNP--IGKYRGKRMRIDYFIVSEELKDR 188
+YR+L H D ++W P +GK K MRID+FIVS+E +R
Sbjct: 528 SYRYLQNIKLNEDKKNNIKHTPNINDNIYTWRC-PFLLGKSCNKAMRIDHFIVSKEFLNR 586
Query: 189 IIACEMQGHGIELEGFYGSDHCPVSLEL 216
I +QG + FYGSDHCPV L L
Sbjct: 587 INKIHIQGFSVFHNNFYGSDHCPVILYL 614
>gi|68063675|ref|XP_673834.1| AP endonuclease (DNA-(apurinic or apyrimidinic site) lyase)
[Plasmodium berghei strain ANKA]
gi|68070845|ref|XP_677336.1| hypothetical protein [Plasmodium berghei strain ANKA]
gi|56491972|emb|CAI02361.1| AP endonuclease (DNA-(apurinic or apyrimidinic site) lyase),
putative [Plasmodium berghei]
gi|56497413|emb|CAH98029.1| hypothetical protein PB000718.02.0 [Plasmodium berghei]
Length = 346
Score = 154 bits (389), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 91/207 (43%), Positives = 124/207 (59%), Gaps = 22/207 (10%)
Query: 28 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVL--QCSGKPLIW 85
+ +GR+IL EF FYLL+TY+PNNG+ ++ F+RR +D +++EFVL + K LIW
Sbjct: 146 HNDEGRIILLEFSNFYLLSTYSPNNGF--DQTKFKRRSLFDNQMKEFVLFMKNENKNLIW 203
Query: 86 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 145
GDLN++ E++D+SHP F K G VP KE GQPG T AER F ILK G LID+
Sbjct: 204 TGDLNIAPEDVDLSHPIEFRKMK-KGNVP--KEYIGQPGCTDAERANFKTILKNGDLIDS 260
Query: 146 YRFL------------HKEKDMDCGFSWSGNP--IGKYRGKRMRIDYFIVSEELKDRIIA 191
YR+ K D ++W P IGK + MRID+FIVS+ L ++I
Sbjct: 261 YRYFENYKIKNDPTYKRKTNINDNIYTWRC-PFLIGKSCNRAMRIDHFIVSKNLLNQIEN 319
Query: 192 CEMQGHGIELEGFYGSDHCPVSLELSE 218
E+ G+ + FYGSDHCPV L + +
Sbjct: 320 IEIHGYSVFHTNFYGSDHCPVILNMKK 346
>gi|303282399|ref|XP_003060491.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226457962|gb|EEH55260.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 514
Score = 148 bits (373), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 91/258 (35%), Positives = 121/258 (46%), Gaps = 73/258 (28%)
Query: 30 PDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQ------------ 77
P+GRV+ EFE LLN YA NNGWK E S +RR+WD ++ F+
Sbjct: 51 PEGRVLFLEFENVTLLNVYAQNNGWKPE--SMAKRRRWDAELKTFLTNDDDDDDDDDDDD 108
Query: 78 ----CSG--------------------------------KPLIWCGDLNVSHEEIDVSHP 101
C+ KP++W GDLN H E DV+HP
Sbjct: 109 DAQLCAASKDATTSNDATSKTNASSLRPRRPTRADGKGLKPIVWTGDLNACHTERDVTHP 168
Query: 102 EFFAAAKLNGY-------VPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKD 154
EFFA K G PP+ +D GQPGFT ER+RF I+ +L+D YR LH +
Sbjct: 169 EFFALQKPEGKKGAPPPETPPDVDDRGQPGFTNNERRRFHDIVTSAKLVDVYRHLHGDAR 228
Query: 155 MDCGFSWSGNP----IGKYRGKRMRIDYFIVSEELKDRIIACEMQGHG-----IELE--- 202
C +W G+P G+Y+G+ MR+DYF VS+ L+ + C LE
Sbjct: 229 RAC--TWYGHPGVVATGRYKGRGMRLDYFFVSDGLERAAVECAQATDAYSDKPAALEQRP 286
Query: 203 --GFYGSDHCPVSLELSE 218
F+GSDHC V L+L +
Sbjct: 287 DDAFFGSDHCGVYLKLKD 304
>gi|298710453|emb|CBJ25517.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 411
Score = 148 bits (373), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 89/206 (43%), Positives = 118/206 (57%), Gaps = 24/206 (11%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGKPLIWC 86
+++ +GRVI E+ + +L Y PNNG K E SFQRRR+WD + FV + SGK LI
Sbjct: 212 EHDREGRVIAIEYPSVTVLALYVPNNGSKAE--SFQRRRRWDDELCGFVDKYSGK-LIIT 268
Query: 87 GDLNVSHEEIDVSHPEFFAAAKLNGYVPP-NKEDWGQPGFTIAERKRFGAILKEGR-LID 144
GDLNV+HE+ D++H FF G P N ED GQPG T AE++R +L G L+D
Sbjct: 269 GDLNVAHEDADLTHASFF-----KGMFPAANPEDSGQPGCTPAEKRRHSRLLASGGGLVD 323
Query: 145 AYRFLHKEKDMDCG--------FSWSGNP------IGKYRGKRMRIDYFIVSEELKDRII 190
AYR L+ G +W G +G+Y GK MRIDYF++S L RI
Sbjct: 324 AYRRLNPVPAAGAGGARTEMEGMTWRGTAGNQVAAMGRYYGKGMRIDYFLLSTALAPRIK 383
Query: 191 ACEMQGHGIELEGFYGSDHCPVSLEL 216
++ G G + +GF GSDHCP+ L L
Sbjct: 384 EVKVFGSGADRDGFLGSDHCPLMLTL 409
>gi|294932897|ref|XP_002780496.1| ap endonuclease, putative [Perkinsus marinus ATCC 50983]
gi|239890430|gb|EER12291.1| ap endonuclease, putative [Perkinsus marinus ATCC 50983]
Length = 395
Score = 147 bits (371), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 88/212 (41%), Positives = 129/212 (60%), Gaps = 19/212 (8%)
Query: 28 YEPDGRVILAEF--ETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVL--QCSGKPL 83
+ P+GR+ILA+F E LL TY PNNGW E+ SF +RR++D ++ F+ + G+ +
Sbjct: 155 HHPEGRIILADFASENLQLLLTYVPNNGWTED--SFAKRRRFDCEVKSFLANAKSQGERI 212
Query: 84 IWCGDLNVSHEEIDVS-HPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRL 142
IW GDLNV+ DV +P +F K + + +D GQPGFT AE+ RF +L+ G L
Sbjct: 213 IWLGDLNVAASWNDVGPNPAWFRRQKQSPGL--CDDDVGQPGFTQAEQNRFAELLEAGGL 270
Query: 143 IDAYRFLHKEKDMDCGFSWSGNP--------IGKYRGKRMRIDYFIVSEELKDRIIACEM 194
ID+YR H E+D + +W G P G++ GK MRIDY +V E +KD I++ E
Sbjct: 271 IDSYRQCHHEEDWEKDATWRGAPGKPPNPPEFGRFYGKGMRIDYVLVPESMKDDILSVEN 330
Query: 195 QGHGIELEGFYGSDHCPV--SLELSEASSDSE 224
G G E +GF GSDH P+ ++++S+ + SE
Sbjct: 331 LGIGKERKGFMGSDHAPLLAAIKVSQPAVLSE 362
>gi|221481831|gb|EEE20201.1| ap endonuclease, putative [Toxoplasma gondii GT1]
Length = 630
Score = 146 bits (368), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 86/212 (40%), Positives = 119/212 (56%), Gaps = 28/212 (13%)
Query: 31 DGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG---------- 80
+GRVILAEFE F +L TY+PNNG + SF+RRR WD+R+ +FV QCS
Sbjct: 333 EGRVILAEFEAFCVLTTYSPNNGATPK--SFERRRLWDERMLQFVTQCSSSPHCEGLPVQ 390
Query: 81 ---KPLIWCGDLNVSHEEIDVSHPEFFAAA---KLNGYVPPNKEDWGQPGFTIAERKRFG 134
KPL+W GDLN + E+ID+S P+ F + +G + P+ + GQ G T AER+RF
Sbjct: 391 LLKKPLVWVGDLNCAPEDIDLSDPDQFRSVIHETADGTIDPD--NIGQAGCTDAERRRFR 448
Query: 135 AILKEGRLIDAYRFLHKEKDM----DCGFSWSGNPIGK----YRGKRMRIDYFIVSEELK 186
AIL+ G L+DA+R LH + +SW G RG MR+D+ +++E L
Sbjct: 449 AILERGNLVDAFRELHPRTEPPPLESAEYSWRGFGGSGSRGLLRGLGMRLDHIVLTETLM 508
Query: 187 DRIIACEMQGHGIELEGFYGSDHCPVSLELSE 218
+ + G G F+GSDHCPV + E
Sbjct: 509 PAVELVRICGAGKSKANFFGSDHCPVLVRFKE 540
>gi|237843341|ref|XP_002370968.1| DNA-(apurinic or apyrimidinic site) lyase, putative [Toxoplasma
gondii ME49]
gi|211968632|gb|EEB03828.1| DNA-(apurinic or apyrimidinic site) lyase, putative [Toxoplasma
gondii ME49]
gi|221502330|gb|EEE28063.1| ap endonuclease, putative [Toxoplasma gondii VEG]
Length = 630
Score = 145 bits (366), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 85/206 (41%), Positives = 117/206 (56%), Gaps = 28/206 (13%)
Query: 31 DGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG---------- 80
+GRVILAEFE F +L TY+PNNG + SF+RRR WD+R+ +FV QCS
Sbjct: 333 EGRVILAEFEAFCVLTTYSPNNGATPK--SFERRRLWDERMLQFVTQCSSSPHCEGLPVQ 390
Query: 81 ---KPLIWCGDLNVSHEEIDVSHPEFFAAA---KLNGYVPPNKEDWGQPGFTIAERKRFG 134
KPL+W GDLN + E+ID+S P+ F + +G + P+ + GQ G T AER+RF
Sbjct: 391 LLKKPLVWVGDLNCAPEDIDLSDPDQFRSVIHETADGTIDPD--NIGQAGCTDAERRRFR 448
Query: 135 AILKEGRLIDAYRFLHKEKDM----DCGFSWSGNPIGK----YRGKRMRIDYFIVSEELK 186
AIL+ G L+DA+R LH + +SW G RG MR+D+ +++E L
Sbjct: 449 AILERGNLVDAFRELHPRTEPPPLESAEYSWRGFGGSGSRGLLRGLGMRLDHIVLTETLM 508
Query: 187 DRIIACEMQGHGIELEGFYGSDHCPV 212
+ + G G F+GSDHCPV
Sbjct: 509 PAVELVRICGAGKSKANFFGSDHCPV 534
>gi|221055699|ref|XP_002258988.1| AP endonuclease (DNA-(apurinic or apyrimidinic site) lyase)
[Plasmodium knowlesi strain H]
gi|193809058|emb|CAQ39761.1| AP endonuclease (DNA-(apurinic or apyrimidinic site) lyase),
putative [Plasmodium knowlesi strain H]
Length = 516
Score = 145 bits (366), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 93/217 (42%), Positives = 121/217 (55%), Gaps = 27/217 (12%)
Query: 21 FLLSALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFV--LQC 78
F L ++ +GRVI+ EF FYLL+TY PNNG+ E F+RRR +D++++EFV L+
Sbjct: 303 FDLDPREHHHEGRVIIVEFSKFYLLSTYTPNNGF--EPVKFERRRLFDEKLKEFVSVLRN 360
Query: 79 SGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILK 138
K L+W GDLN++ E+ D+SHP F K G VP KE GQPG T ERK F IL
Sbjct: 361 KKKNLVWTGDLNIAPEDTDLSHPAEFRRMK-KGNVP--KEFVGQPGCTDFERKNFRGILS 417
Query: 139 EGRLIDAYRFL--------------HKEKDMDCG---FSWSGNP--IGKYRGKRMRIDYF 179
G LID+YR L H D ++W P +GK K MRID+F
Sbjct: 418 AGDLIDSYRHLANLRANKGEPGKATHNRAVSDINDNIYTWRC-PFLMGKSCNKAMRIDHF 476
Query: 180 IVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 216
IVS + + E+ G+ + FYGSDHCPV L L
Sbjct: 477 IVSRDFMPNVENVEIHGYSVFHNNFYGSDHCPVILHL 513
>gi|310893421|gb|ADP37706.1| AP endonuclease ExoIII [Toxoplasma gondii]
Length = 513
Score = 145 bits (365), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 84/199 (42%), Positives = 117/199 (58%), Gaps = 16/199 (8%)
Query: 31 DGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGKPLIWCGDLN 90
+GRVILAEFE F +L TY+PNNG + SF+RRR WD+R+ +FV Q KPL+W GDLN
Sbjct: 230 EGRVILAEFEAFCVLTTYSPNNGATPK--SFERRRLWDERMLQFVTQLK-KPLVWVGDLN 286
Query: 91 VSHEEIDVSHPEFFAAA---KLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYR 147
+ E+ID+S P+ F + +G + P+ + GQ G T AER+RF AIL+ G L+DA+R
Sbjct: 287 CAPEDIDLSDPDQFRSVIHETADGTIDPD--NIGQAGCTDAERRRFRAILERGNLVDAFR 344
Query: 148 FLHKEKDM----DCGFSWSGNPIGK----YRGKRMRIDYFIVSEELKDRIIACEMQGHGI 199
LH + +SW G RG MR+D+ +++E L + + G G
Sbjct: 345 ELHPRTEPPPLESAEYSWRGFGGSGSRGLLRGLGMRLDHIVLTETLMPAVELVRICGAGK 404
Query: 200 ELEGFYGSDHCPVSLELSE 218
F+GSDHCPV + E
Sbjct: 405 SKANFFGSDHCPVLVRFKE 423
>gi|156094081|ref|XP_001613078.1| AP endonuclease [Plasmodium vivax Sal-1]
gi|148801952|gb|EDL43351.1| AP endonuclease (DNA-[apurinic or apyrimidinic site] lyase),
putative [Plasmodium vivax]
Length = 535
Score = 143 bits (361), Expect = 5e-32, Method: Compositional matrix adjust.
Identities = 92/225 (40%), Positives = 123/225 (54%), Gaps = 41/225 (18%)
Query: 28 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFV--LQCSGKPLIW 85
+ +GRVI+AEF FYLL+TY PNNG+ + F+RRR +D+++++FV L+ GK LIW
Sbjct: 294 HHEEGRVIIAEFSKFYLLSTYTPNNGF--DTVKFERRRLFDEQLKKFVSHLRNMGKNLIW 351
Query: 86 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 145
GDLN++ E+ID+SHP F K G VP KE GQPG T ERK F IL G L+D+
Sbjct: 352 TGDLNIAPEDIDLSHPAEFRRMK-KGNVP--KEFVGQPGCTDFERKNFMGILSAGDLVDS 408
Query: 146 YRFL-------------------HKEKDMDC-GFSWSGNP--------------IGKYRG 171
YR L K C G + +G P +GK
Sbjct: 409 YRQLAGKGKAKKGEASKGETNKGETSKGGSCNGAATNGAPDINDNIYTWRCPFLMGKSCN 468
Query: 172 KRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 216
K MRID+FIVS + + ++ G+ + + FYGSDHCPV L L
Sbjct: 469 KAMRIDHFIVSRGFMPNVQSVDIHGYSVFHKNFYGSDHCPVILHL 513
>gi|389583540|dbj|GAB66275.1| AP endonuclease, partial [Plasmodium cynomolgi strain B]
Length = 389
Score = 142 bits (358), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 91/220 (41%), Positives = 122/220 (55%), Gaps = 37/220 (16%)
Query: 28 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEF--VLQCSGKPLIW 85
+ +GRVI+AEF F+LL+TY PNNG+ + F+RRR +D++++EF VL+ K LIW
Sbjct: 157 HHEEGRVIVAEFSNFFLLSTYTPNNGF--DLIKFERRRLFDEQLKEFVSVLKNKKKNLIW 214
Query: 86 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 145
GDLN++ E+ID+SHP F K G VP KE GQPG T ERK F IL G LID+
Sbjct: 215 TGDLNIAPEDIDLSHPAEFRRMK-KGNVP--KEFVGQPGCTDFERKNFRGILSAGDLIDS 271
Query: 146 YRFLHKEKDMDCGFSWSGNP-----------------------------IGKYRGKRMRI 176
YR L K + + G + G P +GK K MRI
Sbjct: 272 YRHLAKLRG-NKGGAVKGEPAKGEPLKVTPGKVTGDINDNIYTWRCPFLMGKSCNKAMRI 330
Query: 177 DYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 216
D+FIVS + + + ++ G+ + FYGSDHCPV L L
Sbjct: 331 DHFIVSRDFMPNVESVDIHGYSVFHNNFYGSDHCPVILRL 370
>gi|14578320|gb|AAF99486.1| PV1H14200_P [Plasmodium vivax]
Length = 540
Score = 141 bits (356), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 92/230 (40%), Positives = 123/230 (53%), Gaps = 46/230 (20%)
Query: 28 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFV--LQCSGKPLIW 85
+ +GRVI+AEF FYLL+TY PNNG+ + F+RRR +D+++++FV L+ GK LIW
Sbjct: 294 HHEEGRVIIAEFSKFYLLSTYTPNNGF--DTVKFERRRLFDEQLKKFVSHLRNMGKNLIW 351
Query: 86 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 145
GDLN++ E+ID+SHP F K G VP KE GQPG T ERK F IL G L+D+
Sbjct: 352 TGDLNIAPEDIDLSHPAEFRRMK-KGNVP--KEFVGQPGCTDFERKNFMGILSAGDLVDS 408
Query: 146 YRFL-------------------HKEKDMDC------GFSWSGNP--------------I 166
YR L K C G + +G P +
Sbjct: 409 YRQLAGKGKAKKGEASKGETNKGETSKGGSCNGGSCNGAATNGAPDINDNIYTWRCPFLM 468
Query: 167 GKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 216
GK K MRID+FIVS + + ++ G+ + + FYGSDHCPV L L
Sbjct: 469 GKSCNKAMRIDHFIVSRGFMPNVQSVDIHGYSVFHKNFYGSDHCPVILHL 518
>gi|323450905|gb|EGB06784.1| hypothetical protein AURANDRAFT_71945 [Aureococcus anophagefferens]
Length = 1309
Score = 139 bits (351), Expect = 8e-31, Method: Composition-based stats.
Identities = 82/226 (36%), Positives = 124/226 (54%), Gaps = 32/226 (14%)
Query: 28 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEF--VLQCSGKPLIW 85
++PDGRVI+ E+ET +L+TY+PNNG + SF+RRR W+ +++ F ++ G+ L++
Sbjct: 160 HDPDGRVIVLEYETLVVLHTYSPNNG--NDAKSFERRRLWEAKVRAFAEAVRVRGRSLVY 217
Query: 86 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNK-----------EDWGQPGFTIAERKRFG 134
GDLN + + D+SHP +F A N P K +D GQPG T E + F
Sbjct: 218 VGDLNCAPTDDDLSHPAWFRAWNSN---QPGKRLGKDRERLEADDEGQPGCTPRESRYFD 274
Query: 135 AILKEGRLIDAYRFLHKEKDMDCG-----FSWSGNP-------IGKYRGKRMRIDYFIVS 182
A+L+ G L DA+R FSW G P G+Y GK MRID+ +VS
Sbjct: 275 ALLRAGGLFDAFRDARGAGAGAATIEGPHFSWRGPPGRDGLPETGRYYGKGMRIDHALVS 334
Query: 183 EELKDRIIACEMQGHGIELEGFYGSDHCPVSLELSEASSDSEKREK 228
+ + +C++ G G+ +GF GSDHCP+ L L +++ E+
Sbjct: 335 TGVA--VESCDLLGRGVGRDGFMGSDHCPLRLVLRGSAAPGADDER 378
>gi|428171338|gb|EKX40256.1| hypothetical protein GUITHDRAFT_75737 [Guillardia theta CCMP2712]
Length = 304
Score = 127 bits (318), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 68/164 (41%), Positives = 101/164 (61%), Gaps = 25/164 (15%)
Query: 19 FHFLLS-ALKYEPDGRVILAEF-----ETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQ 72
FH+ L +++ +GRV +A+F + ++NTYAPNNGWKEE N F +RR+WD R+
Sbjct: 158 FHYNLDLGQEHDENGRVCMAKFVKDDGKELLVVNTYAPNNGWKEESN-FAKRREWDTRLL 216
Query: 73 EFVLQCS--GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAER 130
FV C G + W GD+NV+H++ DV+HP+FF + D GQPGFT E+
Sbjct: 217 SFVRTCRERGMEVAWVGDMNVAHKDCDVTHPDFF------------RGDAGQPGFTANEQ 264
Query: 131 KRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRM 174
+RF +L+EG L+DA+R LH ++ F+ S +P +RG+R
Sbjct: 265 ERFSQVLEEGSLVDAFRLLHSPEE----FTSSDDPAWTWRGQRT 304
>gi|149180849|ref|ZP_01859351.1| exodeoxyribonuclease [Bacillus sp. SG-1]
gi|148851368|gb|EDL65516.1| exodeoxyribonuclease [Bacillus sp. SG-1]
Length = 253
Score = 121 bits (304), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 73/189 (38%), Positives = 105/189 (55%), Gaps = 26/189 (13%)
Query: 29 EPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCG 87
EP+GR I EFE FYLLN Y PN+ K + + + R W++R++ ++ + KP+I+CG
Sbjct: 86 EPEGRCITLEFEDFYLLNVYTPNS--KRDLSRLEDRLHWEERVRAYIKELDEIKPVIYCG 143
Query: 88 DLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYR 147
DLNV+H EID+ +P K + G GFT ER++ +L EG +D++R
Sbjct: 144 DLNVAHNEIDLRNP---------------KSNHGNSGFTTEEREKMSTLLNEG-FVDSFR 187
Query: 148 FLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGS 207
L+ EKD + WS + R RIDYFIVS+ LKD + M + GS
Sbjct: 188 HLYPEKDQSYTW-WSYMSKVRERNIGWRIDYFIVSDRLKDSLKDAGMHTDVL------GS 240
Query: 208 DHCPVSLEL 216
DHCPV +E+
Sbjct: 241 DHCPVYIEI 249
>gi|308808326|ref|XP_003081473.1| Apurinic/apyrimidinic endonuclease and related enzymes (ISS)
[Ostreococcus tauri]
gi|116059936|emb|CAL55995.1| Apurinic/apyrimidinic endonuclease and related enzymes (ISS)
[Ostreococcus tauri]
Length = 447
Score = 121 bits (303), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 77/206 (37%), Positives = 110/206 (53%), Gaps = 33/206 (16%)
Query: 31 DGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGKP-LIWCGDL 89
+GRV+L E+E +LNTY P+NG E +++R WD R++ F+ GK +IW GDL
Sbjct: 230 EGRVLLLEYEKVIVLNTYVPHNGGNPER--WEKRAMWDFRVKRFLTHYKGKKDVIWLGDL 287
Query: 90 NVSHEEIDVS-HPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRF 148
N +H ++DV+ PE F G GFT+ ER+RF IL ++DAYR
Sbjct: 288 NCAHRDLDVAPSPEQFI---------------GVGGFTVPERQRFTDILSTSDMVDAYRA 332
Query: 149 LHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIE-------- 200
LH ++ F+W G IG G MR+DYFIV R+ +CE +
Sbjct: 333 LHGDRQT---FTWRG--IGMGSGLAMRLDYFIVPRTFVHRLKSCETSTDRFDDAVARERP 387
Query: 201 LEGFYGSDHCPVSLELSEA-SSDSEK 225
+ F+GSDHC + L L + +SD+EK
Sbjct: 388 ISCFFGSDHCALYLTLHKRDASDAEK 413
>gi|401412245|ref|XP_003885570.1| hypothetical protein NCLIV_059670 [Neospora caninum Liverpool]
gi|325119989|emb|CBZ55542.1| hypothetical protein NCLIV_059670 [Neospora caninum Liverpool]
Length = 455
Score = 120 bits (300), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 81/192 (42%), Positives = 105/192 (54%), Gaps = 39/192 (20%)
Query: 30 PDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGKPLIWCGDL 89
P+GR+ILAEF F +L TY+PNNG + SF+RRR WD+R+ EFV Q KPL+W GDL
Sbjct: 210 PEGRIILAEFSPFCVLTTYSPNNGGTPK--SFERRRLWDERMLEFVTQLK-KPLVWVGDL 266
Query: 90 NVSHEEIDVSHPEFFAAA---KLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 146
N + E+ID+S PE F + +G + P+ + GQ G T AER+RF AIL+ G D
Sbjct: 267 NCAPEDIDLSDPEQFRSVIHESADGTIDPD--NIGQAGCTDAERRRFRAILERG--WDQC 322
Query: 147 RFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYG 206
L DC F SG P G RG MR+D+ + F+G
Sbjct: 323 MCLK-----DC-FGGSG-PRGMLRGLGMRLDH----------------------IANFFG 353
Query: 207 SDHCPVSLELSE 218
SDHCPV + E
Sbjct: 354 SDHCPVLVRFKE 365
>gi|310643609|ref|YP_003948367.1| exodeoxyribonuclease iii xth [Paenibacillus polymyxa SC2]
gi|309248559|gb|ADO58126.1| Exodeoxyribonuclease III Xth [Paenibacillus polymyxa SC2]
gi|392304359|emb|CCI70722.1| exodeoxyribonuclease III [Paenibacillus polymyxa M1]
Length = 254
Score = 118 bits (296), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 71/194 (36%), Positives = 102/194 (52%), Gaps = 26/194 (13%)
Query: 29 EPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCG 87
EP+GR I EFE FYL+N Y PN K + + R +W+ R + ++ Q KP+I CG
Sbjct: 86 EPEGRTITLEFEKFYLVNVYTPNT--KRDLSRLPYRLEWEDRFRSYLQQLDAQKPVIICG 143
Query: 88 DLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYR 147
DLNV+H+EID+ + K ++G GFT ER R +L G ID +R
Sbjct: 144 DLNVAHQEIDLKNA---------------KANYGNAGFTPEERDRMSQLLNAG-FIDTFR 187
Query: 148 FLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGS 207
+ + ++ D WS P + R RIDYF+VSE L+ ++ + H GS
Sbjct: 188 YFYPDR-TDVYSWWSYMPKVRERNIGWRIDYFLVSERLRPLLMDASIDCH------ITGS 240
Query: 208 DHCPVSLELSEASS 221
DHCPV L+L + S+
Sbjct: 241 DHCPVILDLQDISA 254
>gi|229086305|ref|ZP_04218483.1| Exodeoxyribonuclease [Bacillus cereus Rock3-44]
gi|228697000|gb|EEL49807.1| Exodeoxyribonuclease [Bacillus cereus Rock3-44]
Length = 252
Score = 118 bits (295), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 75/197 (38%), Positives = 107/197 (54%), Gaps = 30/197 (15%)
Query: 23 LSALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK- 81
L +++ +GR+I EFE FY+L Y PN K R KW++ I ++ + K
Sbjct: 81 LGIEEHDQEGRLITLEFEDFYMLTLYTPNA--KRGLERLDYRMKWEEDILSYITKLDKKK 138
Query: 82 PLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGR 141
P+I+CGDLNV+H+EID+ +P K + PGF+ ERKRF IL EG
Sbjct: 139 PVIFCGDLNVAHKEIDLKNP---------------KTNRKNPGFSDQERKRFTQILDEG- 182
Query: 142 LIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRM--RIDYFIVSEELKDRIIACEMQGHGI 199
ID YR+L+ D + +SW + R K + R+DYFIVSE LKD+I+ ++ +
Sbjct: 183 FIDTYRYLY--PDREGAYSWWSYRMNA-RAKNIGWRLDYFIVSERLKDKIVDAKINSEVM 239
Query: 200 ELEGFYGSDHCPVSLEL 216
GSDHCPV L +
Sbjct: 240 ------GSDHCPVELNM 250
>gi|308070428|ref|YP_003872033.1| exodeoxyribonuclease [Paenibacillus polymyxa E681]
gi|305859707|gb|ADM71495.1| Exodeoxyribonuclease [Paenibacillus polymyxa E681]
Length = 254
Score = 117 bits (292), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 71/194 (36%), Positives = 102/194 (52%), Gaps = 26/194 (13%)
Query: 29 EPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCG 87
EP+GR I EFE FYL+N Y PN K + + R +W+ R + ++ Q KP+I CG
Sbjct: 86 EPEGRTITLEFENFYLVNVYTPNT--KRDLSRLPYRLEWEDRFRSYLQQLDALKPVIVCG 143
Query: 88 DLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYR 147
DLNV+H+EID+ + K ++G GFT ER+R +L G ID +R
Sbjct: 144 DLNVAHQEIDLKNA---------------KANYGNAGFTPEERERMSLLLDAG-FIDTFR 187
Query: 148 FLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGS 207
+ ++ D WS P + R RIDYF+VSE L+ ++ + H GS
Sbjct: 188 TFYPDR-TDVYSWWSYMPKVRERNIGWRIDYFLVSERLRPLLMDASIDCH------ITGS 240
Query: 208 DHCPVSLELSEASS 221
DHCPV L+L + S+
Sbjct: 241 DHCPVILDLQDISA 254
>gi|403745673|ref|ZP_10954450.1| exodeoxyribonuclease III Xth [Alicyclobacillus hesperidum
URH17-3-68]
gi|403121241|gb|EJY55561.1| exodeoxyribonuclease III Xth [Alicyclobacillus hesperidum
URH17-3-68]
Length = 219
Score = 116 bits (291), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 68/189 (35%), Positives = 99/189 (52%), Gaps = 26/189 (13%)
Query: 29 EPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWCG 87
EP+GR+I EFE Y++ Y PN K + + R +W+ R + ++L KP+I CG
Sbjct: 54 EPEGRIITLEFEACYVVTVYTPNA--KRDLSRLPYRLEWEDRFRAYLLHLDQNKPVIACG 111
Query: 88 DLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYR 147
DLNV+HEEID+ + K + G GFT ER + +L G D +R
Sbjct: 112 DLNVAHEEIDIKNA---------------KSNRGNSGFTDEERSKMTQLLDAG-FTDTFR 155
Query: 148 FLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGS 207
+LH ++ D WS P + R RIDYF++S L+D+II + H + GS
Sbjct: 156 YLHPDR-ADAYTWWSNMPKVRERNIGWRIDYFLISNRLRDKIIDARIDAHVL------GS 208
Query: 208 DHCPVSLEL 216
DHCP+ LE+
Sbjct: 209 DHCPIVLEV 217
>gi|229174398|ref|ZP_04301930.1| Exodeoxyribonuclease [Bacillus cereus MM3]
gi|228608958|gb|EEK66248.1| Exodeoxyribonuclease [Bacillus cereus MM3]
Length = 252
Score = 115 bits (289), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 71/198 (35%), Positives = 109/198 (55%), Gaps = 30/198 (15%)
Query: 23 LSALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GK 81
L +++ +GRVI EFE FY++ Y PN+ K R KW+ + ++ Q K
Sbjct: 81 LGIEEHDQEGRVITLEFEDFYMITLYTPNS--KRGLERLDYRMKWEDDFRAYIKQLDEKK 138
Query: 82 PLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGR 141
P+++CGDLNV+H+EID+ +P K + PGF+ ER++F IL+EG
Sbjct: 139 PVVFCGDLNVAHKEIDLKNP---------------KSNRKNPGFSDEEREKFTCILEEG- 182
Query: 142 LIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRM--RIDYFIVSEELKDRIIACEMQGHGI 199
ID YR+L+ D + +SW +G R K + R+DYF+VSE +KD+I ++ +
Sbjct: 183 FIDTYRYLY--PDQEGAYSWWSYRMGA-RAKNIGWRLDYFVVSERMKDKITEAKINSEVM 239
Query: 200 ELEGFYGSDHCPVSLELS 217
GSDHCPV L ++
Sbjct: 240 ------GSDHCPVELHIN 251
>gi|229197850|ref|ZP_04324566.1| Exodeoxyribonuclease [Bacillus cereus m1293]
gi|228585568|gb|EEK43670.1| Exodeoxyribonuclease [Bacillus cereus m1293]
Length = 252
Score = 115 bits (288), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 72/198 (36%), Positives = 110/198 (55%), Gaps = 30/198 (15%)
Query: 23 LSALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GK 81
L +++ +GRVI EFE FY++ Y PN+ K R KW+ + ++ + K
Sbjct: 81 LGIEEHDQEGRVITLEFEDFYIITLYTPNS--KRGLERLDYRMKWEDDFRVYIKRLDEKK 138
Query: 82 PLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGR 141
P+I+CGDLNV+H+EID+ +P K + PGF+ ER++F IL+EG
Sbjct: 139 PVIFCGDLNVAHKEIDLKNP---------------KSNRKNPGFSDEEREKFTCILEEG- 182
Query: 142 LIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRM--RIDYFIVSEELKDRIIACEMQGHGI 199
ID YR+L+ D + +SW +G R K + R+DYF+VSE +KD+I A ++ +
Sbjct: 183 FIDTYRYLY--PDQEGAYSWWSYRMGA-RAKNIGWRLDYFVVSERMKDQITAAKINSEVM 239
Query: 200 ELEGFYGSDHCPVSLELS 217
GSDHCPV L ++
Sbjct: 240 ------GSDHCPVELHIN 251
>gi|375309937|ref|ZP_09775215.1| exodeoxyribonuclease [Paenibacillus sp. Aloe-11]
gi|375077890|gb|EHS56120.1| exodeoxyribonuclease [Paenibacillus sp. Aloe-11]
Length = 254
Score = 115 bits (288), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 70/194 (36%), Positives = 103/194 (53%), Gaps = 26/194 (13%)
Query: 29 EPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWCG 87
EP+GR I EFE FYL+N Y PN K + + R +W+ R + ++ Q + KP+I CG
Sbjct: 86 EPEGRTITLEFERFYLVNVYTPNT--KRDLSRLPYRLEWEDRFRNYLQQLDASKPVIVCG 143
Query: 88 DLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYR 147
DLNV+H+EID+ + K ++G GFT ER+R +L G ID +R
Sbjct: 144 DLNVAHQEIDLKNA---------------KANYGNAGFTPEERERMSQLLGAG-FIDTFR 187
Query: 148 FLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGS 207
+ ++ D WS P + R RIDYF+VS+ L+ +I + H GS
Sbjct: 188 HFYPDR-TDVYSWWSYMPKVRERNIGWRIDYFLVSDRLRPLLIDASIDCH------ITGS 240
Query: 208 DHCPVSLELSEASS 221
DHCPV L++ + S+
Sbjct: 241 DHCPVILDMQDISA 254
>gi|423458084|ref|ZP_17434881.1| exodeoxyribonuclease [Bacillus cereus BAG5X2-1]
gi|401148468|gb|EJQ55961.1| exodeoxyribonuclease [Bacillus cereus BAG5X2-1]
Length = 252
Score = 115 bits (288), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 71/198 (35%), Positives = 109/198 (55%), Gaps = 30/198 (15%)
Query: 23 LSALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK- 81
L +++ +GRVI EFE FY++ Y PN+ K R KW+ + ++ Q K
Sbjct: 81 LGIEEHDQEGRVITLEFEDFYIITLYTPNS--KRGLERLDYRMKWEDDFRAYIKQLDKKK 138
Query: 82 PLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGR 141
P+++CGDLNV+H+EID+ +P K + PGF+ ER++F IL+EG
Sbjct: 139 PVVFCGDLNVAHKEIDLKNP---------------KSNRKNPGFSDEEREKFTRILEEG- 182
Query: 142 LIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRM--RIDYFIVSEELKDRIIACEMQGHGI 199
ID YR+L+ D + +SW +G R K + R+DYF+VSE +KD+I ++ +
Sbjct: 183 FIDTYRYLY--PDQEGAYSWWSYRMGA-RAKNIGWRLDYFVVSERMKDKITEAKINSEVM 239
Query: 200 ELEGFYGSDHCPVSLELS 217
GSDHCPV L ++
Sbjct: 240 ------GSDHCPVELHIN 251
>gi|365155344|ref|ZP_09351722.1| exodeoxyribonuclease III (xth) [Bacillus smithii 7_3_47FAA]
gi|363628500|gb|EHL79253.1| exodeoxyribonuclease III (xth) [Bacillus smithii 7_3_47FAA]
Length = 254
Score = 115 bits (288), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 70/201 (34%), Positives = 105/201 (52%), Gaps = 26/201 (12%)
Query: 20 HFLLSALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS 79
H+ L ++ EP+GR+I EF FYL+N Y PN+ + + R +W+ RI+ +++
Sbjct: 77 HYGLGDVENEPEGRIITLEFPKFYLVNVYTPNS--QRDLARLPYRLEWEDRIRSYLIDLD 134
Query: 80 -GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILK 138
KP++ CGDLNV+H+EID+ +P K + G GFT ER + +L
Sbjct: 135 KDKPVLLCGDLNVAHQEIDLRNP---------------KSNQGNSGFTKEERAKMSELLN 179
Query: 139 EGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHG 198
G ID +R+ + EK+ + WS + R RIDYFI S+ L + I E+ H
Sbjct: 180 AG-FIDTFRYFYPEKEGAYTW-WSYINKARERNIGWRIDYFIASKRLANIIKNAEIHSH- 236
Query: 199 IELEGFYGSDHCPVSLELSEA 219
GSDHCP+ LEL +
Sbjct: 237 -----IMGSDHCPIVLELDSS 252
>gi|332800472|ref|YP_004461971.1| exodeoxyribonuclease III Xth [Tepidanaerobacter acetatoxydans Re1]
gi|438003872|ref|YP_007273615.1| Exodeoxyribonuclease III [Tepidanaerobacter acetatoxydans Re1]
gi|332698207|gb|AEE92664.1| exodeoxyribonuclease III Xth [Tepidanaerobacter acetatoxydans Re1]
gi|432180666|emb|CCP27639.1| Exodeoxyribonuclease III [Tepidanaerobacter acetatoxydans Re1]
Length = 251
Score = 115 bits (287), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 71/191 (37%), Positives = 104/191 (54%), Gaps = 26/191 (13%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIW 85
+++ +GRVI EFE FY +N Y PN+ + R KW+ +E++++ G KP+I
Sbjct: 84 EHDAEGRVITLEFENFYFVNVYVPNS--QRGLTRLDYRMKWEDDFREYLIKLDGIKPVIC 141
Query: 86 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 145
CGD NV+H+EID+ +P K + GFT ER++ +L G IDA
Sbjct: 142 CGDKNVAHQEIDLKNP---------------KSNRKNAGFTDEERQKMTELLNSG-FIDA 185
Query: 146 YRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 205
+R+L+ +K D WS + + RIDYFIVSE LKD+I E+ H +
Sbjct: 186 FRYLYPDKK-DAYTWWSYMFKAREKNVGWRIDYFIVSERLKDKIKDVEIHSHVM------ 238
Query: 206 GSDHCPVSLEL 216
GSDHCPV L++
Sbjct: 239 GSDHCPVLLDI 249
>gi|218231608|ref|YP_002368543.1| exodeoxyribonuclease III [Bacillus cereus B4264]
gi|218159565|gb|ACK59557.1| exodeoxyribonuclease III [Bacillus cereus B4264]
Length = 252
Score = 115 bits (287), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 70/198 (35%), Positives = 110/198 (55%), Gaps = 30/198 (15%)
Query: 23 LSALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GK 81
L +++ +GR+I EFE FY++ Y PN+ K R KW+ + ++ + K
Sbjct: 81 LDIEEHDQEGRLITLEFEDFYMITLYTPNS--KRGLERLDYRMKWEDDFRSYIKRLDEKK 138
Query: 82 PLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGR 141
P+I+CGDLNV+H+EID+ +P K + PGF+ ER++F +IL+EG
Sbjct: 139 PVIFCGDLNVAHKEIDLKNP---------------KSNRKNPGFSDEEREKFSSILEEG- 182
Query: 142 LIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRM--RIDYFIVSEELKDRIIACEMQGHGI 199
ID YR+L+ D + +SW +G R K + R+DYF+VSE +KD+I ++ +
Sbjct: 183 FIDTYRYLY--PDQEGAYSWWSYRMGA-RAKNIGWRLDYFVVSERMKDQITEAKINSEVM 239
Query: 200 ELEGFYGSDHCPVSLELS 217
GSDHCPV L ++
Sbjct: 240 ------GSDHCPVELHIN 251
>gi|302876908|ref|YP_003845541.1| exodeoxyribonuclease III Xth [Clostridium cellulovorans 743B]
gi|307687596|ref|ZP_07630042.1| exodeoxyribonuclease III Xth [Clostridium cellulovorans 743B]
gi|302579765|gb|ADL53777.1| exodeoxyribonuclease III Xth [Clostridium cellulovorans 743B]
Length = 253
Score = 115 bits (287), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 67/193 (34%), Positives = 107/193 (55%), Gaps = 26/193 (13%)
Query: 23 LSALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGK 81
L+ +++ +GRVI E++ FYL+ Y PN+ KEE + R +W+ + ++ + K
Sbjct: 80 LNIEEHDKEGRVITLEYDDFYLVTVYTPNS--KEELARLEYRMEWEDAFRAYLKKLEKNK 137
Query: 82 PLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGR 141
P+I CGDLNV+H+EID+ +P K + PGF+ ER +F +L G
Sbjct: 138 PVIVCGDLNVAHKEIDLKNP---------------KTNRKNPGFSDEERAKFSELLASG- 181
Query: 142 LIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIEL 201
ID YR+ + +K+ + WS + + RIDYF++SEELKD++++ E+ +
Sbjct: 182 FIDTYRYFYPDKEGAYSW-WSYRFNARTKNAGWRIDYFVISEELKDKLVSAEIHNEIL-- 238
Query: 202 EGFYGSDHCPVSL 214
GSDHCPV L
Sbjct: 239 ----GSDHCPVEL 247
>gi|229031365|ref|ZP_04187367.1| Exodeoxyribonuclease [Bacillus cereus AH1271]
gi|228729930|gb|EEL80908.1| Exodeoxyribonuclease [Bacillus cereus AH1271]
Length = 252
Score = 115 bits (287), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 71/198 (35%), Positives = 109/198 (55%), Gaps = 30/198 (15%)
Query: 23 LSALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GK 81
L +++ +GRVI EFE FY++ Y PN+ K R KW+ + ++ + K
Sbjct: 81 LGIEEHDQEGRVITVEFEGFYMITLYTPNS--KRGLERLDYRMKWEDDFRAYIKRLDEKK 138
Query: 82 PLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGR 141
P+I+CGDLNV+H+EID+ +P K + PGF+ ER++F IL+EG
Sbjct: 139 PVIFCGDLNVAHKEIDLKNP---------------KSNRKNPGFSDEEREKFTRILEEG- 182
Query: 142 LIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRM--RIDYFIVSEELKDRIIACEMQGHGI 199
ID YR+L+ D + +SW +G R K + R+DYF+VSE +KD+I ++ +
Sbjct: 183 FIDTYRYLY--PDQEGAYSWWSYRMGA-RAKNIGWRLDYFVVSERMKDKITEAKINSEVM 239
Query: 200 ELEGFYGSDHCPVSLELS 217
GSDHCPV L ++
Sbjct: 240 ------GSDHCPVELHIN 251
>gi|354580157|ref|ZP_08999062.1| exodeoxyribonuclease III [Paenibacillus lactis 154]
gi|353202588|gb|EHB68037.1| exodeoxyribonuclease III [Paenibacillus lactis 154]
Length = 255
Score = 115 bits (287), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 68/191 (35%), Positives = 104/191 (54%), Gaps = 26/191 (13%)
Query: 29 EPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCG 87
EP+GR+I EF+ FYL+N Y PN K + + R +W++R + ++ Q KP+I CG
Sbjct: 86 EPEGRIITLEFQHFYLVNVYTPNA--KRDLSRLSYRLEWEERFRRYLQQLDAVKPVIICG 143
Query: 88 DLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYR 147
DLNV+H+EID+ + K + G GFT+ ER + +L G ID++R
Sbjct: 144 DLNVAHQEIDLKNA---------------KSNLGNSGFTLEERGKMTDLLAAG-FIDSFR 187
Query: 148 FLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGS 207
F + ++ D WS + R RIDYF+VS L ++++ E+ H + GS
Sbjct: 188 FFYPDR-TDVYSWWSYMAKVRERNIGWRIDYFLVSARLSEKLVDAEIDCHVL------GS 240
Query: 208 DHCPVSLELSE 218
DHCPV L +S+
Sbjct: 241 DHCPVRLTVSK 251
>gi|330843681|ref|XP_003293776.1| hypothetical protein DICPUDRAFT_9650 [Dictyostelium purpureum]
gi|325075853|gb|EGC29694.1| hypothetical protein DICPUDRAFT_9650 [Dictyostelium purpureum]
Length = 249
Score = 114 bits (285), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 71/195 (36%), Positives = 107/195 (54%), Gaps = 28/195 (14%)
Query: 21 FLLSALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS- 79
F + K++ +GRVI AE++ FYL+NTY PN+G + +N R ++WD Q+++++
Sbjct: 80 FGIGIAKHDTEGRVITAEYDDFYLVNTYIPNSGSRGLKNLDYRIKEWDVDFQKYLVELDK 139
Query: 80 GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKE 139
KP++WCGDLNV+H EID+ +P K + GFTI ER FG L +
Sbjct: 140 KKPVVWCGDLNVAHTEIDLKNP---------------KTNTKSAGFTIQERTSFGDFLNK 184
Query: 140 GRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRM--RIDYFIVSEELKDRIIACEMQGH 197
G ID+YR + K+ F W+ +G R K + R+DYF+VS+ D I ++
Sbjct: 185 G-FIDSYRHYNPGKEGAFTF-WT--YMGGARAKNVGWRLDYFVVSKRYIDSIKTPFIR-- 238
Query: 198 GIELEGFYGSDHCPV 212
GSDHCP+
Sbjct: 239 ----STVMGSDHCPI 249
>gi|390455653|ref|ZP_10241181.1| exodeoxyribonuclease III [Paenibacillus peoriae KCTC 3763]
Length = 254
Score = 114 bits (284), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 69/194 (35%), Positives = 103/194 (53%), Gaps = 26/194 (13%)
Query: 29 EPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWCG 87
EP+GR I EFE FYL+N Y PN K + + R +W+ R + ++ Q + KP+I CG
Sbjct: 86 EPEGRTITLEFEKFYLVNVYTPNT--KRDLSRLPYRLEWEDRFRSYLQQLDASKPVIICG 143
Query: 88 DLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYR 147
DLNV+H+EID+ + K ++G GFT ER+R +L G ID +R
Sbjct: 144 DLNVAHQEIDLKNA---------------KANYGNAGFTPEERERMSQLLGAG-FIDTFR 187
Query: 148 FLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGS 207
+ ++ + WS P + R RIDYF+VS+ L+ +I + H GS
Sbjct: 188 HFYPDR-TEVYSWWSYMPKVRERNIGWRIDYFLVSDRLRPLLIDASIDCH------ITGS 240
Query: 208 DHCPVSLELSEASS 221
DHCPV L++ + S+
Sbjct: 241 DHCPVILDMQDISA 254
>gi|374319924|ref|YP_005073053.1| exodeoxyribonuclease III [Paenibacillus terrae HPL-003]
gi|357198933|gb|AET56830.1| exodeoxyribonuclease III [Paenibacillus terrae HPL-003]
Length = 254
Score = 114 bits (284), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 69/194 (35%), Positives = 103/194 (53%), Gaps = 26/194 (13%)
Query: 29 EPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWCG 87
EP+GR I EFE FYL+N Y PN K + + R +W+ R + ++ Q + KP+I CG
Sbjct: 86 EPEGRTITLEFEKFYLVNVYTPNT--KRDLSRLPYRLEWEDRFRSYLQQLDASKPVIVCG 143
Query: 88 DLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYR 147
DLNV+H+EID+ + K ++G GFT ER+R +L G ID +R
Sbjct: 144 DLNVAHQEIDLKNA---------------KANYGNAGFTPEERERMSQLLGAG-FIDTFR 187
Query: 148 FLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGS 207
+ ++ + WS P + R RIDYF+VS+ L+ +I + H GS
Sbjct: 188 HFYPDRTEVYSW-WSYMPKVRERNIGWRIDYFLVSDRLRPLLIDASIDCH------ITGS 240
Query: 208 DHCPVSLELSEASS 221
DHCPV L++ + S+
Sbjct: 241 DHCPVILDMQDISA 254
>gi|226309896|ref|YP_002769790.1| exodeoxyribonuclease [Brevibacillus brevis NBRC 100599]
gi|226092844|dbj|BAH41286.1| exodeoxyribonuclease [Brevibacillus brevis NBRC 100599]
Length = 253
Score = 114 bits (284), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 68/190 (35%), Positives = 101/190 (53%), Gaps = 26/190 (13%)
Query: 28 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWC 86
+EP+GRVI EF+ FYL+ Y PN K + + R +W+ R + ++LQ G KP++ C
Sbjct: 85 HEPEGRVITLEFQDFYLVTVYTPNA--KRDLSRLDYRLEWEDRFRNYLLQLDGKKPVVVC 142
Query: 87 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 146
GDLNV+H+EID+ + K + G GFT ER++ ++L G +D Y
Sbjct: 143 GDLNVAHQEIDLKNA---------------KSNRGNSGFTPEEREKMTSLLAAG-FVDTY 186
Query: 147 RFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYG 206
R+ + ++ D WS P + R RIDYF+ SE L ++ + + G
Sbjct: 187 RYFYPDQ-TDAYTWWSFMPKVRERNIGWRIDYFLASERLAPALLRAGIDSQVM------G 239
Query: 207 SDHCPVSLEL 216
SDHCPV LEL
Sbjct: 240 SDHCPVVLEL 249
>gi|218898840|ref|YP_002447251.1| exodeoxyribonuclease III [Bacillus cereus G9842]
gi|218542018|gb|ACK94412.1| exodeoxyribonuclease III [Bacillus cereus G9842]
Length = 252
Score = 114 bits (284), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 70/198 (35%), Positives = 109/198 (55%), Gaps = 30/198 (15%)
Query: 23 LSALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GK 81
L +++ +GR+I EFE FY++ Y PN+ K R KW+ + ++ + K
Sbjct: 81 LEIEEHDQEGRLITLEFEDFYMITLYTPNS--KRGLERLDYRMKWEDDFRSYIKRLDEKK 138
Query: 82 PLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGR 141
P+I+CGDLNV+H+EID+ +P K + PGF+ ER++F IL+EG
Sbjct: 139 PVIFCGDLNVAHKEIDLKNP---------------KSNRKNPGFSDEEREKFTCILEEG- 182
Query: 142 LIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRM--RIDYFIVSEELKDRIIACEMQGHGI 199
ID YR+L+ D + +SW +G R K + R+DYF+VSE +KD+I ++ +
Sbjct: 183 FIDTYRYLY--SDQEGAYSWWSYRMGA-RAKNIGWRLDYFVVSERMKDQITEAKINSEVM 239
Query: 200 ELEGFYGSDHCPVSLELS 217
GSDHCPV L ++
Sbjct: 240 ------GSDHCPVELHIN 251
>gi|75759849|ref|ZP_00739924.1| Exodeoxyribonuclease III [Bacillus thuringiensis serovar
israelensis ATCC 35646]
gi|228902244|ref|ZP_04066404.1| Exodeoxyribonuclease [Bacillus thuringiensis IBL 4222]
gi|228966664|ref|ZP_04127710.1| Exodeoxyribonuclease [Bacillus thuringiensis serovar sotto str.
T04001]
gi|402558959|ref|YP_006601683.1| exodeoxyribonuclease III [Bacillus thuringiensis HD-771]
gi|423359274|ref|ZP_17336777.1| exodeoxyribonuclease [Bacillus cereus VD022]
gi|423561854|ref|ZP_17538130.1| exodeoxyribonuclease [Bacillus cereus MSX-A1]
gi|434376797|ref|YP_006611441.1| exodeoxyribonuclease III [Bacillus thuringiensis HD-789]
gi|74492665|gb|EAO55806.1| Exodeoxyribonuclease III [Bacillus thuringiensis serovar
israelensis ATCC 35646]
gi|228793040|gb|EEM40596.1| Exodeoxyribonuclease [Bacillus thuringiensis serovar sotto str.
T04001]
gi|228857359|gb|EEN01859.1| Exodeoxyribonuclease [Bacillus thuringiensis IBL 4222]
gi|401085146|gb|EJP93392.1| exodeoxyribonuclease [Bacillus cereus VD022]
gi|401202111|gb|EJR08976.1| exodeoxyribonuclease [Bacillus cereus MSX-A1]
gi|401787611|gb|AFQ13650.1| exodeoxyribonuclease III [Bacillus thuringiensis HD-771]
gi|401875354|gb|AFQ27521.1| exodeoxyribonuclease III [Bacillus thuringiensis HD-789]
Length = 252
Score = 113 bits (283), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 70/198 (35%), Positives = 109/198 (55%), Gaps = 30/198 (15%)
Query: 23 LSALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GK 81
L +++ +GR+I EFE FY++ Y PN+ K R KW+ + ++ + K
Sbjct: 81 LEIEEHDQEGRLITLEFEDFYMITLYTPNS--KRGLERLDYRMKWEDDFRSYIKRLDEKK 138
Query: 82 PLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGR 141
P+I+CGDLNV+H+EID+ +P K + PGF+ ER++F IL+EG
Sbjct: 139 PVIFCGDLNVAHKEIDLKNP---------------KSNRKNPGFSDEEREKFTCILEEG- 182
Query: 142 LIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRM--RIDYFIVSEELKDRIIACEMQGHGI 199
ID YR+L+ D + +SW +G R K + R+DYF+VSE +KD+I ++ +
Sbjct: 183 FIDTYRYLY--SDQEGAYSWWSYRMGA-RAKNIGWRLDYFVVSERMKDQITEAKINSEVM 239
Query: 200 ELEGFYGSDHCPVSLELS 217
GSDHCPV L ++
Sbjct: 240 ------GSDHCPVELHIN 251
>gi|423401446|ref|ZP_17378619.1| exodeoxyribonuclease [Bacillus cereus BAG2X1-2]
gi|401654436|gb|EJS71979.1| exodeoxyribonuclease [Bacillus cereus BAG2X1-2]
Length = 252
Score = 113 bits (283), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 70/198 (35%), Positives = 109/198 (55%), Gaps = 30/198 (15%)
Query: 23 LSALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GK 81
L +++ +GRVI EFE FY++ Y PN+ K R KW+ + ++ + K
Sbjct: 81 LGIEEHDQEGRVITLEFEDFYMITLYTPNS--KRGLERLDYRMKWEDDFRAYIKRLDEKK 138
Query: 82 PLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGR 141
P+++CGDLNV+H+EID+ +P K + PGF+ ER++F IL+EG
Sbjct: 139 PVVFCGDLNVAHKEIDLKNP---------------KSNRKNPGFSDEEREKFTRILEEG- 182
Query: 142 LIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRM--RIDYFIVSEELKDRIIACEMQGHGI 199
ID YR+L+ D + +SW +G R K + R+DYF+VSE +K++I E+ +
Sbjct: 183 FIDTYRYLY--PDQEGAYSWWSYRMGA-RAKNIGWRLDYFVVSERMKNQITEAEINSEVM 239
Query: 200 ELEGFYGSDHCPVSLELS 217
GSDHCPV L ++
Sbjct: 240 ------GSDHCPVELHIN 251
>gi|30263740|ref|NP_846117.1| exodeoxyribonuclease III [Bacillus anthracis str. Ames]
gi|47529159|ref|YP_020508.1| exodeoxyribonuclease III [Bacillus anthracis str. 'Ames Ancestor']
gi|49186585|ref|YP_029837.1| exodeoxyribonuclease III [Bacillus anthracis str. Sterne]
gi|65321063|ref|ZP_00394022.1| COG0708: Exonuclease III [Bacillus anthracis str. A2012]
gi|118478961|ref|YP_896112.1| exodeoxyribonuclease III [Bacillus thuringiensis str. Al Hakam]
gi|165872421|ref|ZP_02217056.1| exodeoxyribonuclease III [Bacillus anthracis str. A0488]
gi|167639873|ref|ZP_02398142.1| exodeoxyribonuclease III [Bacillus anthracis str. A0193]
gi|170706859|ref|ZP_02897317.1| exodeoxyribonuclease III [Bacillus anthracis str. A0389]
gi|177652038|ref|ZP_02934584.1| exodeoxyribonuclease III [Bacillus anthracis str. A0174]
gi|190568466|ref|ZP_03021373.1| exodeoxyribonuclease III [Bacillus anthracis str. Tsiankovskii-I]
gi|196034121|ref|ZP_03101531.1| exodeoxyribonuclease III [Bacillus cereus W]
gi|196038388|ref|ZP_03105697.1| exodeoxyribonuclease III [Bacillus cereus NVH0597-99]
gi|196044665|ref|ZP_03111900.1| exodeoxyribonuclease III [Bacillus cereus 03BB108]
gi|218904866|ref|YP_002452700.1| exodeoxyribonuclease III [Bacillus cereus AH820]
gi|225865717|ref|YP_002751095.1| exodeoxyribonuclease III [Bacillus cereus 03BB102]
gi|227813360|ref|YP_002813369.1| exodeoxyribonuclease III [Bacillus anthracis str. CDC 684]
gi|228916370|ref|ZP_04079939.1| Exodeoxyribonuclease [Bacillus thuringiensis serovar pulsiensis
BGSC 4CC1]
gi|228928786|ref|ZP_04091820.1| Exodeoxyribonuclease [Bacillus thuringiensis serovar
pondicheriensis BGSC 4BA1]
gi|228935036|ref|ZP_04097866.1| Exodeoxyribonuclease [Bacillus thuringiensis serovar andalousiensis
BGSC 4AW1]
gi|228947401|ref|ZP_04109692.1| Exodeoxyribonuclease [Bacillus thuringiensis serovar monterrey BGSC
4AJ1]
gi|229092775|ref|ZP_04223913.1| Exodeoxyribonuclease [Bacillus cereus Rock3-42]
gi|229123254|ref|ZP_04252458.1| Exodeoxyribonuclease [Bacillus cereus 95/8201]
gi|229185967|ref|ZP_04313138.1| Exodeoxyribonuclease [Bacillus cereus BGSC 6E1]
gi|229603277|ref|YP_002867975.1| exodeoxyribonuclease III [Bacillus anthracis str. A0248]
gi|254721165|ref|ZP_05182956.1| exodeoxyribonuclease III [Bacillus anthracis str. A1055]
gi|254735775|ref|ZP_05193481.1| exodeoxyribonuclease III [Bacillus anthracis str. Western North
America USA6153]
gi|254751095|ref|ZP_05203134.1| exodeoxyribonuclease III [Bacillus anthracis str. Vollum]
gi|254759412|ref|ZP_05211437.1| exodeoxyribonuclease III [Bacillus anthracis str. Australia 94]
gi|376267630|ref|YP_005120342.1| Exodeoxyribonuclease III [Bacillus cereus F837/76]
gi|386737557|ref|YP_006210738.1| Exodeoxyribonuclease III [Bacillus anthracis str. H9401]
gi|421510574|ref|ZP_15957465.1| exodeoxyribonuclease III [Bacillus anthracis str. UR-1]
gi|30258384|gb|AAP27603.1| exodeoxyribonuclease III [Bacillus anthracis str. Ames]
gi|47504307|gb|AAT32983.1| exodeoxyribonuclease III [Bacillus anthracis str. 'Ames Ancestor']
gi|49180512|gb|AAT55888.1| exodeoxyribonuclease III [Bacillus anthracis str. Sterne]
gi|118418186|gb|ABK86605.1| exodeoxyribonuclease III [Bacillus thuringiensis str. Al Hakam]
gi|164711859|gb|EDR17401.1| exodeoxyribonuclease III [Bacillus anthracis str. A0488]
gi|167512274|gb|EDR87651.1| exodeoxyribonuclease III [Bacillus anthracis str. A0193]
gi|170128277|gb|EDS97146.1| exodeoxyribonuclease III [Bacillus anthracis str. A0389]
gi|172082407|gb|EDT67472.1| exodeoxyribonuclease III [Bacillus anthracis str. A0174]
gi|190560470|gb|EDV14448.1| exodeoxyribonuclease III [Bacillus anthracis str. Tsiankovskii-I]
gi|195993195|gb|EDX57153.1| exodeoxyribonuclease III [Bacillus cereus W]
gi|196024700|gb|EDX63372.1| exodeoxyribonuclease III [Bacillus cereus 03BB108]
gi|196030796|gb|EDX69394.1| exodeoxyribonuclease III [Bacillus cereus NVH0597-99]
gi|218539943|gb|ACK92341.1| exodeoxyribonuclease III [Bacillus cereus AH820]
gi|225789176|gb|ACO29393.1| exodeoxyribonuclease III [Bacillus cereus 03BB102]
gi|227006454|gb|ACP16197.1| exodeoxyribonuclease III [Bacillus anthracis str. CDC 684]
gi|228597519|gb|EEK55168.1| Exodeoxyribonuclease [Bacillus cereus BGSC 6E1]
gi|228660030|gb|EEL15666.1| Exodeoxyribonuclease [Bacillus cereus 95/8201]
gi|228690573|gb|EEL44354.1| Exodeoxyribonuclease [Bacillus cereus Rock3-42]
gi|228812254|gb|EEM58584.1| Exodeoxyribonuclease [Bacillus thuringiensis serovar monterrey BGSC
4AJ1]
gi|228824606|gb|EEM70408.1| Exodeoxyribonuclease [Bacillus thuringiensis serovar andalousiensis
BGSC 4AW1]
gi|228830871|gb|EEM76474.1| Exodeoxyribonuclease [Bacillus thuringiensis serovar
pondicheriensis BGSC 4BA1]
gi|228843280|gb|EEM88359.1| Exodeoxyribonuclease [Bacillus thuringiensis serovar pulsiensis
BGSC 4CC1]
gi|229267685|gb|ACQ49322.1| exodeoxyribonuclease III [Bacillus anthracis str. A0248]
gi|364513430|gb|AEW56829.1| Exodeoxyribonuclease III [Bacillus cereus F837/76]
gi|384387409|gb|AFH85070.1| Exodeoxyribonuclease III [Bacillus anthracis str. H9401]
gi|401819394|gb|EJT18573.1| exodeoxyribonuclease III [Bacillus anthracis str. UR-1]
Length = 252
Score = 113 bits (283), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 70/198 (35%), Positives = 110/198 (55%), Gaps = 30/198 (15%)
Query: 23 LSALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GK 81
L +++ +GRVI EFE FY++ Y PN+ K + R KW+ + ++ + K
Sbjct: 81 LGIEEHDQEGRVITLEFEDFYIITLYTPNS--KRGLERLEYRMKWEDDFRAYIKRLDEKK 138
Query: 82 PLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGR 141
+++CGDLNV+H+EID+ +P K + PGF+ ER++F IL+EG
Sbjct: 139 SVVFCGDLNVAHKEIDLKNP---------------KSNRKNPGFSDEEREKFTCILEEG- 182
Query: 142 LIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRM--RIDYFIVSEELKDRIIACEMQGHGI 199
ID YR+L+ D + +SW +G R K + R+DYF+VSE +KD+I A ++ +
Sbjct: 183 FIDTYRYLY--PDQEGAYSWWSYRMGA-RAKNIGWRLDYFVVSERMKDQITAAKINSEVM 239
Query: 200 ELEGFYGSDHCPVSLELS 217
GSDHCPV L ++
Sbjct: 240 ------GSDHCPVELHIN 251
>gi|49478354|ref|YP_037804.1| exodeoxyribonuclease III [Bacillus thuringiensis serovar konkukian
str. 97-27]
gi|301055229|ref|YP_003793440.1| exodeoxyribonuclease III [Bacillus cereus biovar anthracis str. CI]
gi|423550511|ref|ZP_17526838.1| exodeoxyribonuclease III (xth) [Bacillus cereus ISP3191]
gi|49329910|gb|AAT60556.1| exodeoxyribonuclease III [Bacillus thuringiensis serovar konkukian
str. 97-27]
gi|300377398|gb|ADK06302.1| exodeoxyribonuclease III [Bacillus cereus biovar anthracis str. CI]
gi|401190127|gb|EJQ97177.1| exodeoxyribonuclease III (xth) [Bacillus cereus ISP3191]
Length = 252
Score = 113 bits (283), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 70/198 (35%), Positives = 110/198 (55%), Gaps = 30/198 (15%)
Query: 23 LSALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GK 81
L +++ +GRVI EFE FY++ Y PN+ K + R KW+ + ++ + K
Sbjct: 81 LGIEEHDQEGRVITLEFEDFYIITLYTPNS--KRGLERLEYRMKWEDDFRAYIKRLDEKK 138
Query: 82 PLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGR 141
+++CGDLNV+H+EID+ +P K + PGF+ ER++F IL+EG
Sbjct: 139 SVVFCGDLNVAHKEIDLKNP---------------KSNRKNPGFSDEEREKFTCILEEG- 182
Query: 142 LIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRM--RIDYFIVSEELKDRIIACEMQGHGI 199
ID YR+L+ D + +SW +G R K + R+DYF+VSE +KD+I A ++ +
Sbjct: 183 FIDTYRYLY--PDQEGAYSWWSYRMGA-RAKNIGWRLDYFVVSERMKDQITAAKINSEVM 239
Query: 200 ELEGFYGSDHCPVSLELS 217
GSDHCPV L ++
Sbjct: 240 ------GSDHCPVELHIN 251
>gi|423635487|ref|ZP_17611140.1| exodeoxyribonuclease [Bacillus cereus VD156]
gi|401278238|gb|EJR84174.1| exodeoxyribonuclease [Bacillus cereus VD156]
Length = 252
Score = 113 bits (283), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 70/198 (35%), Positives = 109/198 (55%), Gaps = 30/198 (15%)
Query: 23 LSALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GK 81
L +++ +GR+I EFE FY++ Y PN+ K R KW+ + ++ + K
Sbjct: 81 LDIEEHDQEGRLITLEFEDFYMITLYTPNS--KRGLERLDYRMKWEDDFRSYIKRLDEKK 138
Query: 82 PLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGR 141
P+I+CGDLNV+H+EID+ +P K + PGF+ ER++F IL+EG
Sbjct: 139 PVIFCGDLNVAHKEIDLKNP---------------KSNRKNPGFSDEEREKFSCILEEG- 182
Query: 142 LIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRM--RIDYFIVSEELKDRIIACEMQGHGI 199
ID YR+L+ D + +SW +G R K + R+DYF+VSE +KD+I ++ +
Sbjct: 183 FIDTYRYLY--PDQEDAYSWWSYRMGA-RAKNIGWRLDYFVVSERMKDQITEAKINSEVM 239
Query: 200 ELEGFYGSDHCPVSLELS 217
GSDHCPV L ++
Sbjct: 240 ------GSDHCPVELHIN 251
>gi|423477848|ref|ZP_17454563.1| exodeoxyribonuclease [Bacillus cereus BAG6X1-1]
gi|402428773|gb|EJV60865.1| exodeoxyribonuclease [Bacillus cereus BAG6X1-1]
Length = 252
Score = 113 bits (282), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 70/198 (35%), Positives = 109/198 (55%), Gaps = 30/198 (15%)
Query: 23 LSALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GK 81
L +++ +GRVI EFE FY++ Y PN+ K R KW+ + ++ + K
Sbjct: 81 LGIEEHDQEGRVITLEFEDFYIITLYTPNS--KRGLERLDYRMKWEDDFRAYIKRLDEKK 138
Query: 82 PLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGR 141
P+++CGDLNV+H+EID+ +P K + PGF+ ER++F IL+EG
Sbjct: 139 PVVFCGDLNVAHKEIDLKNP---------------KSNRKNPGFSDEEREKFTRILEEG- 182
Query: 142 LIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRM--RIDYFIVSEELKDRIIACEMQGHGI 199
ID YR+L+ D + +SW +G R K + R+DYF+VSE +K++I E+ +
Sbjct: 183 FIDTYRYLY--PDQEGAYSWWSYRMGA-RAKNIGWRLDYFVVSERMKNQITEAEINSEVM 239
Query: 200 ELEGFYGSDHCPVSLELS 217
GSDHCPV L ++
Sbjct: 240 ------GSDHCPVELHIN 251
>gi|423385244|ref|ZP_17362500.1| exodeoxyribonuclease [Bacillus cereus BAG1X1-2]
gi|423528399|ref|ZP_17504844.1| exodeoxyribonuclease [Bacillus cereus HuB1-1]
gi|401635300|gb|EJS53055.1| exodeoxyribonuclease [Bacillus cereus BAG1X1-2]
gi|402452062|gb|EJV83881.1| exodeoxyribonuclease [Bacillus cereus HuB1-1]
Length = 252
Score = 113 bits (282), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 69/198 (34%), Positives = 109/198 (55%), Gaps = 30/198 (15%)
Query: 23 LSALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GK 81
L +++ +GR+I EFE FY++ Y PN+ K R KW+ + ++ + K
Sbjct: 81 LGIEEHDQEGRLITLEFEDFYMITLYTPNS--KRGLERLDYRMKWEDDFRSYIKRLDEKK 138
Query: 82 PLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGR 141
P+I+CGDLNV+H+EID+ +P K + PGF+ ER++F IL+EG
Sbjct: 139 PVIFCGDLNVAHKEIDLKNP---------------KSNRKNPGFSDEEREKFSCILEEG- 182
Query: 142 LIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRM--RIDYFIVSEELKDRIIACEMQGHGI 199
+D YR+L+ D + +SW +G R K + R+DYF+VSE +KD+I ++ +
Sbjct: 183 FVDTYRYLY--PDQEGAYSWWSYRMGA-RAKNIGWRLDYFVVSERMKDQITEAKINSEVM 239
Query: 200 ELEGFYGSDHCPVSLELS 217
GSDHCPV L ++
Sbjct: 240 ------GSDHCPVELHIN 251
>gi|291457988|ref|ZP_06597378.1| exodeoxyribonuclease III [Oribacterium sp. oral taxon 078 str.
F0262]
gi|291419320|gb|EFE93039.1| exodeoxyribonuclease III [Oribacterium sp. oral taxon 078 str.
F0262]
Length = 272
Score = 113 bits (282), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 78/203 (38%), Positives = 112/203 (55%), Gaps = 32/203 (15%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQR---RRKWDKRIQEFVLQCS-GKP 82
+++ +GRVI AEF Y+L Y PN+ +N QR R +W+ +E++L KP
Sbjct: 86 EHDREGRVISAEFPDCYILTVYVPNS-----QNELQRLSYRMEWEDAFREYILSLEEKKP 140
Query: 83 LIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRL 142
+I+CGDLNV+H+EID+ +P A+ N GFT ER +F +L G L
Sbjct: 141 VIYCGDLNVAHQEIDLKNP---ASNHHNA------------GFTDDERAKFSRLLDCGYL 185
Query: 143 IDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELE 202
D++RFLH E + D WS + R RIDYF+VSE+L++RI +G I E
Sbjct: 186 -DSFRFLHPE-ERDAYSWWSYRTKARERNVGWRIDYFVVSEKLRERI-----RGASIHPE 238
Query: 203 GFYGSDHCPVSLELSEASSDSEK 225
GSDHCPV L+L+ +E+
Sbjct: 239 -IMGSDHCPVELDLAVCPEGAER 260
>gi|228922454|ref|ZP_04085756.1| Exodeoxyribonuclease [Bacillus thuringiensis serovar huazhongensis
BGSC 4BD1]
gi|423581952|ref|ZP_17558063.1| exodeoxyribonuclease [Bacillus cereus VD014]
gi|228837168|gb|EEM82507.1| Exodeoxyribonuclease [Bacillus thuringiensis serovar huazhongensis
BGSC 4BD1]
gi|401212831|gb|EJR19572.1| exodeoxyribonuclease [Bacillus cereus VD014]
Length = 252
Score = 113 bits (282), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 70/198 (35%), Positives = 109/198 (55%), Gaps = 30/198 (15%)
Query: 23 LSALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GK 81
L +++ +GR+I EFE FY++ Y PN+ K R KW+ + ++ + K
Sbjct: 81 LDIEEHDQEGRLITLEFEDFYMITLYTPNS--KRGLERLDYRMKWEDDFRSYIKRLDEKK 138
Query: 82 PLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGR 141
P+I+CGDLNV+H+EID+ +P K + PGF+ ER++F IL+EG
Sbjct: 139 PVIFCGDLNVAHKEIDLKNP---------------KSNRKNPGFSDEEREKFSCILEEG- 182
Query: 142 LIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRM--RIDYFIVSEELKDRIIACEMQGHGI 199
ID YR+L+ D + +SW +G R K + R+DYF+VSE +KD+I ++ +
Sbjct: 183 FIDTYRYLY--PDQEDAYSWWSYRMGA-RAKNIGWRLDYFVVSERMKDQITEAKINTEVM 239
Query: 200 ELEGFYGSDHCPVSLELS 217
GSDHCPV L ++
Sbjct: 240 ------GSDHCPVELHIN 251
>gi|402303594|ref|ZP_10822685.1| exodeoxyribonuclease III [Selenomonas sp. FOBRC9]
gi|400378209|gb|EJP31070.1| exodeoxyribonuclease III [Selenomonas sp. FOBRC9]
Length = 250
Score = 112 bits (281), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 72/195 (36%), Positives = 103/195 (52%), Gaps = 32/195 (16%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQR---RRKWDKRIQEFVLQC-SGKP 82
+++ +GRVI EF+ YL+ Y PN+ +N+ R R W+ + F+L+ S KP
Sbjct: 84 QHDNEGRVITMEFDDLYLVTVYTPNS-----QNALARLDYRMAWEDAFRAFLLELRSKKP 138
Query: 83 LIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRL 142
++ CGDLNV+H EID+ +P K + GFT ER +FG +L G
Sbjct: 139 VVVCGDLNVAHTEIDLKNP---------------KSNRRNAGFTDEERGKFGELLAAG-F 182
Query: 143 IDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELE 202
+D +R L+ +K + WS + RIDYF+VSEEL+ RI A E+
Sbjct: 183 VDTFRALYPDK-VGAYTWWSYLRHARETNAGWRIDYFLVSEELRGRIAAAEIHAD----- 236
Query: 203 GFYGSDHCPVSLELS 217
+GSDHCPVSL LS
Sbjct: 237 -IFGSDHCPVSLTLS 250
>gi|320529778|ref|ZP_08030856.1| exodeoxyribonuclease III [Selenomonas artemidis F0399]
gi|320138017|gb|EFW29921.1| exodeoxyribonuclease III [Selenomonas artemidis F0399]
Length = 250
Score = 112 bits (281), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 72/195 (36%), Positives = 103/195 (52%), Gaps = 32/195 (16%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQR---RRKWDKRIQEFVLQC-SGKP 82
+++ +GRVI EF+ YL+ Y PN+ +N+ R R W+ + F+L+ S KP
Sbjct: 84 QHDNEGRVITMEFDDLYLVTVYTPNS-----QNALARLDYRMAWEDAFRSFLLELRSKKP 138
Query: 83 LIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRL 142
++ CGDLNV+H EID+ +P K + GFT ER +FG +L G
Sbjct: 139 VVVCGDLNVAHTEIDLKNP---------------KSNRRNAGFTDEERGKFGELLAAG-F 182
Query: 143 IDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELE 202
+D +R L+ +K + WS + RIDYF+VSEEL+ RI A E+
Sbjct: 183 VDTFRALYPDK-VGAYTWWSYLRHARETNAGWRIDYFLVSEELRGRIAAAEIHAD----- 236
Query: 203 GFYGSDHCPVSLELS 217
+GSDHCPVSL LS
Sbjct: 237 -VFGSDHCPVSLTLS 250
>gi|16800960|ref|NP_471228.1| hypothetical protein lin1894 [Listeria innocua Clip11262]
gi|422416297|ref|ZP_16493254.1| exodeoxyribonuclease III [Listeria innocua FSL J1-023]
gi|16414395|emb|CAC97124.1| lin1894 [Listeria innocua Clip11262]
gi|313623313|gb|EFR93545.1| exodeoxyribonuclease III [Listeria innocua FSL J1-023]
Length = 251
Score = 112 bits (281), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 70/197 (35%), Positives = 104/197 (52%), Gaps = 28/197 (14%)
Query: 23 LSALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GK 81
L +++ +GRVI EFE FY++ Y PN+ + E R ++ I E+V K
Sbjct: 80 LGVPEHDTEGRVITLEFEDFYMVTVYTPNS--QAELKRLDYRMTFEDAILEYVKNLDKTK 137
Query: 82 PLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGR 141
P++ CGDLNV+HEEID+ +P K + GF+ ER +F A L G
Sbjct: 138 PVVLCGDLNVAHEEIDLKNP---------------KTNRKNAGFSDEERAKFSAFLDAG- 181
Query: 142 LIDAYRFLHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIE 200
ID++R+ + D+ +S WS + R RIDYF+VSE LKD+++ ++ +
Sbjct: 182 FIDSFRYFY--PDLTDAYSWWSYRMNARARNTGWRIDYFVVSERLKDKLVDAKIHADVL- 238
Query: 201 LEGFYGSDHCPVSLELS 217
GSDHCPV LEL+
Sbjct: 239 -----GSDHCPVELELN 250
>gi|229191862|ref|ZP_04318833.1| Exodeoxyribonuclease [Bacillus cereus ATCC 10876]
gi|228591624|gb|EEK49472.1| Exodeoxyribonuclease [Bacillus cereus ATCC 10876]
Length = 252
Score = 112 bits (281), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 69/198 (34%), Positives = 108/198 (54%), Gaps = 30/198 (15%)
Query: 23 LSALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GK 81
L +++ +GR+I EFE FY++ Y PN+ K R KW+ + ++ + K
Sbjct: 81 LDIEEHDQEGRLITLEFEDFYMITLYTPNS--KRGLERLDYRMKWEDDFRSYIKRLDEKK 138
Query: 82 PLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGR 141
P+I+CGDLNV+H+EID+ +P K + PGF+ ER++F IL+EG
Sbjct: 139 PVIFCGDLNVAHKEIDLKNP---------------KSNRKNPGFSDEEREKFSCILEEG- 182
Query: 142 LIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRM--RIDYFIVSEELKDRIIACEMQGHGI 199
D YR+L+ D + +SW +G R K + R+DYF+VSE +KD+I ++ +
Sbjct: 183 FTDTYRYLY--PDQESAYSWWSYRMGA-RAKNIGWRLDYFVVSERMKDQITEAKINSEVM 239
Query: 200 ELEGFYGSDHCPVSLELS 217
GSDHCPV L ++
Sbjct: 240 ------GSDHCPVELHIN 251
>gi|313895351|ref|ZP_07828908.1| exodeoxyribonuclease III [Selenomonas sp. oral taxon 137 str.
F0430]
gi|312976246|gb|EFR41704.1| exodeoxyribonuclease III [Selenomonas sp. oral taxon 137 str.
F0430]
Length = 250
Score = 112 bits (281), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 72/195 (36%), Positives = 103/195 (52%), Gaps = 32/195 (16%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQR---RRKWDKRIQEFVLQC-SGKP 82
+++ +GRVI EF+ YL+ Y PN+ +N+ R R W+ + F+L+ S KP
Sbjct: 84 QHDNEGRVITMEFDDLYLVTVYTPNS-----QNALARLDYRMAWEDAFRAFLLELRSKKP 138
Query: 83 LIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRL 142
++ CGDLNV+H EID+ +P K + GFT ER +FG +L G
Sbjct: 139 VVVCGDLNVAHTEIDLKNP---------------KSNRRNAGFTDEERGKFGELLAAG-F 182
Query: 143 IDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELE 202
+D +R L+ +K + WS + RIDYF+VSEEL+ RI A E+
Sbjct: 183 VDTFRALYPDK-VGAYTWWSYLRHARETNAGWRIDYFLVSEELRGRIAAAEIHAD----- 236
Query: 203 GFYGSDHCPVSLELS 217
+GSDHCPVSL LS
Sbjct: 237 -VFGSDHCPVSLTLS 250
>gi|229111211|ref|ZP_04240765.1| Exodeoxyribonuclease [Bacillus cereus Rock1-15]
gi|229146311|ref|ZP_04274682.1| Exodeoxyribonuclease [Bacillus cereus BDRD-ST24]
gi|296504242|ref|YP_003665942.1| exodeoxyribonuclease III [Bacillus thuringiensis BMB171]
gi|423585849|ref|ZP_17561936.1| exodeoxyribonuclease [Bacillus cereus VD045]
gi|423641177|ref|ZP_17616795.1| exodeoxyribonuclease [Bacillus cereus VD166]
gi|423649605|ref|ZP_17625175.1| exodeoxyribonuclease [Bacillus cereus VD169]
gi|423656600|ref|ZP_17631899.1| exodeoxyribonuclease [Bacillus cereus VD200]
gi|228636944|gb|EEK93403.1| Exodeoxyribonuclease [Bacillus cereus BDRD-ST24]
gi|228672205|gb|EEL27495.1| Exodeoxyribonuclease [Bacillus cereus Rock1-15]
gi|296325294|gb|ADH08222.1| exodeoxyribonuclease III [Bacillus thuringiensis BMB171]
gi|401233195|gb|EJR39691.1| exodeoxyribonuclease [Bacillus cereus VD045]
gi|401280238|gb|EJR86160.1| exodeoxyribonuclease [Bacillus cereus VD166]
gi|401282885|gb|EJR88782.1| exodeoxyribonuclease [Bacillus cereus VD169]
gi|401290341|gb|EJR96035.1| exodeoxyribonuclease [Bacillus cereus VD200]
Length = 252
Score = 112 bits (280), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 70/198 (35%), Positives = 112/198 (56%), Gaps = 30/198 (15%)
Query: 23 LSALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GK 81
L +++ +GR+I EFE FY++ Y PN+ K R KW+ + ++ + K
Sbjct: 81 LGIEEHDQEGRLITLEFEDFYMITLYTPNS--KRGLERLDYRMKWEDDFRSYIKRLDEKK 138
Query: 82 PLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGR 141
P+I+CGDLNV+H+EID+ +P+ N+E+ PGF+ ER++F IL+EG
Sbjct: 139 PVIFCGDLNVAHKEIDLKNPK------------SNREN---PGFSDEEREKFSCILEEG- 182
Query: 142 LIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRM--RIDYFIVSEELKDRIIACEMQGHGI 199
ID YR+L+ + + +SW +G R K + R+DYF+VSE +KD+I ++ +
Sbjct: 183 FIDTYRYLY--PNQEGAYSWWSYRMGA-RAKNIGWRLDYFVVSERMKDQITEAKINSEVM 239
Query: 200 ELEGFYGSDHCPVSLELS 217
GSDHCPV L ++
Sbjct: 240 ------GSDHCPVELHIN 251
>gi|324515683|gb|ADY46281.1| Recombination repair protein 1 [Ascaris suum]
Length = 378
Score = 112 bits (280), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 66/188 (35%), Positives = 104/188 (55%), Gaps = 25/188 (13%)
Query: 31 DGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWCGDL 89
+GR+I+AE++ FYL+N Y PN+G + +R+ WD +++ Q + K +I+ GDL
Sbjct: 214 EGRLIVAEYDKFYLINAYVPNSG--RGLVNLAKRKIWDDFFIDYIKQLDASKAVIYAGDL 271
Query: 90 NVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFL 149
NV+HEEID+++P+ N+ GFT ER F +L+ G +D YR L
Sbjct: 272 NVAHEEIDLANPKT------------NRNKTA--GFTDQERGDFTRLLQAG-FVDVYRSL 316
Query: 150 HKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDH 209
H +K F WS + R+DYF+VSE L D+++ CE+ GSDH
Sbjct: 317 HPDKTGAYTF-WSTMHNARATNIGWRLDYFVVSERLMDKVVKCEINSR------VMGSDH 369
Query: 210 CPVSLELS 217
CP++L+++
Sbjct: 370 CPLTLQIN 377
>gi|422413323|ref|ZP_16490282.1| exodeoxyribonuclease III, partial [Listeria innocua FSL S4-378]
gi|313618350|gb|EFR90386.1| exodeoxyribonuclease III [Listeria innocua FSL S4-378]
Length = 253
Score = 112 bits (280), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 70/197 (35%), Positives = 104/197 (52%), Gaps = 28/197 (14%)
Query: 23 LSALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GK 81
L +++ +GRVI EFE FY++ Y PN+ + E R ++ I E+V K
Sbjct: 82 LGVPEHDTEGRVITLEFEDFYMVTVYTPNS--QAELKRLDYRMTFEDAILEYVKNLDKTK 139
Query: 82 PLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGR 141
P++ CGDLNV+HEEID+ +P K + GF+ ER +F A L G
Sbjct: 140 PVVLCGDLNVAHEEIDLKNP---------------KTNRKNAGFSDEERAKFSAFLDAG- 183
Query: 142 LIDAYRFLHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIE 200
ID++R+ + D+ +S WS + R RIDYF+VSE LKD+++ ++ +
Sbjct: 184 FIDSFRYFY--PDLTDAYSWWSYRMNARARNTGWRIDYFVVSERLKDKLVDAKIHADVL- 240
Query: 201 LEGFYGSDHCPVSLELS 217
GSDHCPV LEL+
Sbjct: 241 -----GSDHCPVELELN 252
>gi|23097966|ref|NP_691432.1| exodeoxyribonuclease [Oceanobacillus iheyensis HTE831]
gi|22776190|dbj|BAC12467.1| exodeoxyribonuclease [Oceanobacillus iheyensis HTE831]
Length = 269
Score = 112 bits (280), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 69/192 (35%), Positives = 102/192 (53%), Gaps = 26/192 (13%)
Query: 28 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 86
YEP+GR+I E+E+FYL+N Y PN+ K + + R +W+ R+ +++ + + KPL++C
Sbjct: 85 YEPEGRIITLEYESFYLVNVYTPNS--KRDLTRLEDRLEWEDRLFDYLQKLNKKKPLVYC 142
Query: 87 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 146
GDLNV+H EID+ + +K + G GFT ER + +L G +D
Sbjct: 143 GDLNVAHHEIDLRN---------------DKTNHGNSGFTKEERSKMSRLLDAG-FVDTL 186
Query: 147 RFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYG 206
R H E D D WS + R RIDYFIVSE+L + E+ + G
Sbjct: 187 RHFHPEAD-DIFTWWSYMKTIRERNIGWRIDYFIVSEQLIPALKKSEVHSSVL------G 239
Query: 207 SDHCPVSLELSE 218
SDHCP+ L + E
Sbjct: 240 SDHCPIGLVIDE 251
>gi|423100921|ref|ZP_17088626.1| exodeoxyribonuclease III [Listeria innocua ATCC 33091]
gi|370792563|gb|EHN60427.1| exodeoxyribonuclease III [Listeria innocua ATCC 33091]
Length = 256
Score = 112 bits (280), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 70/197 (35%), Positives = 104/197 (52%), Gaps = 28/197 (14%)
Query: 23 LSALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GK 81
L +++ +GRVI EFE FY++ Y PN+ + E R ++ I E+V K
Sbjct: 85 LGVPEHDTEGRVITLEFEDFYMVTVYTPNS--QAELKRLDYRMTFEDAILEYVKNLDKTK 142
Query: 82 PLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGR 141
P++ CGDLNV+HEEID+ +P K + GF+ ER +F A L G
Sbjct: 143 PVVLCGDLNVAHEEIDLKNP---------------KTNRKNAGFSDEERAKFSAFLDAG- 186
Query: 142 LIDAYRFLHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIE 200
ID++R+ + D+ +S WS + R RIDYF+VSE LKD+++ ++ +
Sbjct: 187 FIDSFRYFY--PDLTDAYSWWSYRMNARARNTGWRIDYFVVSERLKDKLVDAKIHADVL- 243
Query: 201 LEGFYGSDHCPVSLELS 217
GSDHCPV LEL+
Sbjct: 244 -----GSDHCPVELELN 255
>gi|407473575|ref|YP_006787975.1| exodeoxyribonuclease III [Clostridium acidurici 9a]
gi|407050083|gb|AFS78128.1| exodeoxyribonuclease III [Clostridium acidurici 9a]
Length = 250
Score = 112 bits (279), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 71/195 (36%), Positives = 104/195 (53%), Gaps = 26/195 (13%)
Query: 23 LSALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-K 81
L +++ +GRVI EFE FYL+N Y PN+ + E R KW+ +E++ K
Sbjct: 80 LGIEEHDQEGRVITLEFEDFYLVNVYTPNS--QSELARLDYRMKWEDIFREYLKDLDNIK 137
Query: 82 PLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGR 141
P+I CGDLNV+H+EID+ +P K + GFT ER + +L+ G
Sbjct: 138 PVILCGDLNVAHKEIDLKNP---------------KTNRKNAGFTDEERNKMTELLESG- 181
Query: 142 LIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIEL 201
D++R+L+ EK+ + WS + RIDYFIVSE++KD+I ++ +
Sbjct: 182 FTDSFRYLYPEKEGSYSW-WSYMRKARENNSGWRIDYFIVSEKMKDKIKDAQIHSN---- 236
Query: 202 EGFYGSDHCPVSLEL 216
GSDHCPV LEL
Sbjct: 237 --IMGSDHCPVMLEL 249
>gi|345018486|ref|YP_004820839.1| exodeoxyribonuclease III Xth [Thermoanaerobacter wiegelii Rt8.B1]
gi|344033829|gb|AEM79555.1| exodeoxyribonuclease III Xth [Thermoanaerobacter wiegelii Rt8.B1]
Length = 257
Score = 112 bits (279), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 70/193 (36%), Positives = 106/193 (54%), Gaps = 26/193 (13%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIW 85
+++ +GRVI E+E FYL+NTY PN+ + R +W++ + ++L+ S KP+I
Sbjct: 87 QHDNEGRVITLEYEKFYLVNTYTPNS--QRGLTRLSYRMEWEEDFRNYLLKLDSVKPIIL 144
Query: 86 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 145
CGDLNV+H+EID+ +P +A + N GFT ER++ +L G ID
Sbjct: 145 CGDLNVAHKEIDIKNP---SANRRNA------------GFTDEEREKMTMLLNSG-FIDT 188
Query: 146 YRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 205
+R+ + K D WS + + RIDYFIVS+ LKD +I E+ +
Sbjct: 189 FRYFYPHKK-DAYTWWSYMRNAREKNIGWRIDYFIVSQRLKDYLIDAEIHSDVM------ 241
Query: 206 GSDHCPVSLELSE 218
GSDHCPV LE+ +
Sbjct: 242 GSDHCPVVLEIDD 254
>gi|326390442|ref|ZP_08212000.1| exodeoxyribonuclease III Xth [Thermoanaerobacter ethanolicus JW
200]
gi|392939538|ref|ZP_10305182.1| exodeoxyribonuclease III [Thermoanaerobacter siderophilus SR4]
gi|325993560|gb|EGD51994.1| exodeoxyribonuclease III Xth [Thermoanaerobacter ethanolicus JW
200]
gi|392291288|gb|EIV99731.1| exodeoxyribonuclease III [Thermoanaerobacter siderophilus SR4]
Length = 257
Score = 112 bits (279), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 70/193 (36%), Positives = 106/193 (54%), Gaps = 26/193 (13%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIW 85
+++ +GRVI E+E FYL+NTY PN+ + R +W++ + ++L+ S KP+I
Sbjct: 87 QHDNEGRVITLEYEKFYLVNTYTPNS--QRGLTRLSYRMEWEEDFRNYLLKLDSVKPIIL 144
Query: 86 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 145
CGDLNV+H+EID+ +P +A + N GFT ER++ +L G ID
Sbjct: 145 CGDLNVAHKEIDIKNP---SANRRNA------------GFTDEEREKMTMLLNSG-FIDT 188
Query: 146 YRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 205
+R+ + K D WS + + RIDYFIVS+ LKD +I E+ +
Sbjct: 189 FRYFYPHKK-DAYTWWSYMRNAREKNIGWRIDYFIVSQRLKDYLIDAEIHSDVM------ 241
Query: 206 GSDHCPVSLELSE 218
GSDHCPV LE+ +
Sbjct: 242 GSDHCPVVLEIDD 254
>gi|47568231|ref|ZP_00238934.1| exodeoxyribonuclease III [Bacillus cereus G9241]
gi|228986876|ref|ZP_04147003.1| Exodeoxyribonuclease [Bacillus thuringiensis serovar tochigiensis
BGSC 4Y1]
gi|47555059|gb|EAL13407.1| exodeoxyribonuclease III [Bacillus cereus G9241]
gi|228772825|gb|EEM21264.1| Exodeoxyribonuclease [Bacillus thuringiensis serovar tochigiensis
BGSC 4Y1]
Length = 252
Score = 112 bits (279), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 70/198 (35%), Positives = 109/198 (55%), Gaps = 30/198 (15%)
Query: 23 LSALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GK 81
L +++ +GRVI EFE FY++ Y PN+ K R KW+ + ++ + K
Sbjct: 81 LGIEEHDQEGRVITLEFEDFYIITLYTPNS--KRGLERLDYRMKWEDDFRVYIKRLDEKK 138
Query: 82 PLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGR 141
P+I+CGDLNV+H+EID+ +P K + PGF+ ER++F IL+EG
Sbjct: 139 PVIFCGDLNVAHKEIDLKNP---------------KSNRKNPGFSDEEREKFTCILEEG- 182
Query: 142 LIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRM--RIDYFIVSEELKDRIIACEMQGHGI 199
ID YR+L+ + + +SW +G R K + R+DYF+VSE +KD+I ++ +
Sbjct: 183 FIDTYRYLY--PNQEGAYSWWSYRMGA-RAKNIGWRLDYFVVSERMKDQITEAKINSEVM 239
Query: 200 ELEGFYGSDHCPVSLELS 217
GSDHCPV L ++
Sbjct: 240 ------GSDHCPVELHIN 251
>gi|340382054|ref|XP_003389536.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase-like
[Amphimedon queenslandica]
Length = 372
Score = 112 bits (279), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 69/189 (36%), Positives = 105/189 (55%), Gaps = 24/189 (12%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIW 85
K++ +GRVI AEFE FY + Y PN G K + S+ R +WD ++++ KP++
Sbjct: 203 KHDNEGRVITAEFEKFYFVTAYIPNAGDKLKRLSY-RVGEWDPDFKKYLKSLDENKPVVL 261
Query: 86 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 145
CGDLNV+H+EID+++P K + GFT ER+ F ++L++ +LID+
Sbjct: 262 CGDLNVAHKEIDIANP---------------KTNQRSAGFTKEERESFSSLLEDNKLIDS 306
Query: 146 YRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 205
+R L+ +K + WS + K R+DYF+VSE LK + C+ I Y
Sbjct: 307 FRDLYPDKKEAYSY-WSYRSNARKNNKGWRLDYFLVSERLKAAV--CD----SIIRSQVY 359
Query: 206 GSDHCPVSL 214
GSDHCP+ L
Sbjct: 360 GSDHCPIVL 368
>gi|30021833|ref|NP_833464.1| exodeoxyribonuclease III [Bacillus cereus ATCC 14579]
gi|229129016|ref|ZP_04257989.1| Exodeoxyribonuclease [Bacillus cereus BDRD-Cer4]
gi|29897389|gb|AAP10665.1| Exodeoxyribonuclease III [Bacillus cereus ATCC 14579]
gi|228654253|gb|EEL10118.1| Exodeoxyribonuclease [Bacillus cereus BDRD-Cer4]
Length = 252
Score = 111 bits (278), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 70/198 (35%), Positives = 112/198 (56%), Gaps = 30/198 (15%)
Query: 23 LSALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GK 81
L +++ +GR+I EFE FY++ Y PN+ K R KW+ + ++ + K
Sbjct: 81 LGIEEHDQEGRLITLEFEDFYMITLYTPNS--KRGLERLDYRMKWEDDFRSYIKRLDEKK 138
Query: 82 PLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGR 141
P+I+CGDLNV+H+EID+ +P+ N+E+ PGF+ ER++F IL+EG
Sbjct: 139 PVIFCGDLNVAHKEIDLKNPK------------SNREN---PGFSDEEREKFSCILEEG- 182
Query: 142 LIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRM--RIDYFIVSEELKDRIIACEMQGHGI 199
ID YR+L+ + + +SW +G R K + R+DYF+VSE +KD+I ++ +
Sbjct: 183 FIDTYRYLY--PNQEGAYSWWSYRMGA-RAKNIGWRLDYFVVSEGMKDQITEAKINSEVM 239
Query: 200 ELEGFYGSDHCPVSLELS 217
GSDHCPV L ++
Sbjct: 240 ------GSDHCPVELHIN 251
>gi|329930518|ref|ZP_08284058.1| exodeoxyribonuclease III [Paenibacillus sp. HGF5]
gi|328934896|gb|EGG31386.1| exodeoxyribonuclease III [Paenibacillus sp. HGF5]
Length = 250
Score = 111 bits (278), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 70/189 (37%), Positives = 101/189 (53%), Gaps = 26/189 (13%)
Query: 29 EPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCG 87
EP+GRVI EFE FYL+N Y PN K + + R +W++R + ++LQ KP+I CG
Sbjct: 86 EPEGRVITLEFEDFYLVNVYTPNA--KRDLSRLDYRLEWEERFRTYLLQLDERKPVIVCG 143
Query: 88 DLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYR 147
DLNV+H+EID+ + K + G GFT+ ER + +L G ID++R
Sbjct: 144 DLNVAHQEIDLKNA---------------KSNHGNSGFTLEERGKMTDLLAAG-FIDSFR 187
Query: 148 FLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGS 207
+ ++ D WS + R RIDYF+ S L +++ E+ H + GS
Sbjct: 188 HFYPDR-TDVYSWWSYMAKVRERNIGWRIDYFLTSARLAEKLKDAEIDCHVL------GS 240
Query: 208 DHCPVSLEL 216
DHCPVSL L
Sbjct: 241 DHCPVSLTL 249
>gi|228959948|ref|ZP_04121613.1| Exodeoxyribonuclease [Bacillus thuringiensis serovar pakistani str.
T13001]
gi|423628823|ref|ZP_17604572.1| exodeoxyribonuclease [Bacillus cereus VD154]
gi|228799691|gb|EEM46643.1| Exodeoxyribonuclease [Bacillus thuringiensis serovar pakistani str.
T13001]
gi|401268368|gb|EJR74416.1| exodeoxyribonuclease [Bacillus cereus VD154]
Length = 252
Score = 111 bits (278), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 69/198 (34%), Positives = 109/198 (55%), Gaps = 30/198 (15%)
Query: 23 LSALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GK 81
L +++ +GR+I EFE FY++ Y PN+ K R KW+ + ++ + K
Sbjct: 81 LGIEEHDQEGRLITLEFEDFYMITLYTPNS--KRGLERLDYRMKWEDDFRSYIKRLDEKK 138
Query: 82 PLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGR 141
P+I+CGDLNV+H+EID+ +P K + PGF+ ER++F IL+EG
Sbjct: 139 PVIFCGDLNVAHKEIDLKNP---------------KSNRKNPGFSDEEREKFSCILEEG- 182
Query: 142 LIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRM--RIDYFIVSEELKDRIIACEMQGHGI 199
ID YR+L+ + + +SW +G R K + R+DYF+VSE +KD+I ++ +
Sbjct: 183 FIDTYRYLY--PNQEGAYSWWSYRMGA-RAKNIGWRLDYFVVSERMKDQITEAKINSEVM 239
Query: 200 ELEGFYGSDHCPVSLELS 217
GSDHCPV L ++
Sbjct: 240 ------GSDHCPVELHIN 251
>gi|403234513|ref|ZP_10913099.1| exodeoxyribonuclease III [Bacillus sp. 10403023]
Length = 251
Score = 111 bits (278), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 69/193 (35%), Positives = 107/193 (55%), Gaps = 30/193 (15%)
Query: 29 EPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCG 87
E +GR++ EFE FYL+N Y PN+ + + R W+ RI+E+++Q + KP++ CG
Sbjct: 86 EDEGRILTLEFEDFYLINVYTPNS--QRDLARLHFRLNWEDRIREYLIQLNKLKPIVLCG 143
Query: 88 DLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYR 147
DLNV+H +ID+ + K + G GFT ER + +L G ID++R
Sbjct: 144 DLNVAHSDIDLKNA---------------KSNRGNSGFTEEERGKMTDLLNSG-FIDSFR 187
Query: 148 FLHKEKDMDCGFSWSGNPIGKYRGKRM--RIDYFIVSEELKDRIIACEMQGHGIELEGFY 205
+ + DM ++W + + R K + RIDYFIVSEELK R+ ++ H +
Sbjct: 188 YFY--PDMTDKYTW-WSYMRNVREKNIGWRIDYFIVSEELKHRLKDSQIHSHVM------ 238
Query: 206 GSDHCPVSLELSE 218
GSDHCPV L++ +
Sbjct: 239 GSDHCPVVLQIQK 251
>gi|319652957|ref|ZP_08007062.1| exodeoxyribonuclease III [Bacillus sp. 2_A_57_CT2]
gi|317395306|gb|EFV76039.1| exodeoxyribonuclease III [Bacillus sp. 2_A_57_CT2]
Length = 251
Score = 111 bits (278), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 71/189 (37%), Positives = 105/189 (55%), Gaps = 26/189 (13%)
Query: 29 EPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCG 87
EP+GR++ E+E FYL+N Y PN+ + + R +W++RI+E++L KP+I CG
Sbjct: 86 EPEGRILTLEYEGFYLVNVYTPNS--QRDLARLPYRLEWEERIREYLLGLDQIKPVIMCG 143
Query: 88 DLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYR 147
DLNV+H EID+ + K + G GFT ER + +L G +DA+R
Sbjct: 144 DLNVAHFEIDLKNA---------------KSNRGNSGFTDEERGKMTRLLGSG-FVDAFR 187
Query: 148 FLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGS 207
+ + E + + WS + R RIDYFIVSE+LK+RI+ ++ GS
Sbjct: 188 YKYPEAEGAYTW-WSYMAKVRERNIGWRIDYFIVSEKLKERILDSQIHCD------IMGS 240
Query: 208 DHCPVSLEL 216
DHCPV+LEL
Sbjct: 241 DHCPVALEL 249
>gi|261408787|ref|YP_003245028.1| exodeoxyribonuclease III Xth [Paenibacillus sp. Y412MC10]
gi|261285250|gb|ACX67221.1| exodeoxyribonuclease III Xth [Paenibacillus sp. Y412MC10]
Length = 250
Score = 111 bits (278), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 70/189 (37%), Positives = 101/189 (53%), Gaps = 26/189 (13%)
Query: 29 EPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCG 87
EP+GRVI EFE FYL+N Y PN K + + R +W++R + ++LQ KP+I CG
Sbjct: 86 EPEGRVITLEFEGFYLVNVYTPNA--KRDLSRLDYRLEWEERFRTYLLQLDERKPVIVCG 143
Query: 88 DLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYR 147
DLNV+H+EID+ + K + G GFT+ ER + +L G ID++R
Sbjct: 144 DLNVAHQEIDLKNA---------------KSNHGNSGFTLEERGKMTDLLAAG-FIDSFR 187
Query: 148 FLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGS 207
+ ++ D WS + R RIDYF+ S L +++ E+ H + GS
Sbjct: 188 HFYPDR-TDVYSWWSYMAKVRERNIGWRIDYFLTSARLAEKLKDAEIDCHVL------GS 240
Query: 208 DHCPVSLEL 216
DHCPVSL L
Sbjct: 241 DHCPVSLTL 249
>gi|66817330|ref|XP_642518.1| hypothetical protein DDB_G0277701 [Dictyostelium discoideum AX4]
gi|161784257|sp|P51173.2|APEA_DICDI RecName: Full=DNA-(apurinic or apyrimidinic site) lyase; AltName:
Full=Class II apurinic/apyrimidinic(AP)-endonuclease
gi|60470608|gb|EAL68586.1| hypothetical protein DDB_G0277701 [Dictyostelium discoideum AX4]
Length = 361
Score = 111 bits (277), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 67/195 (34%), Positives = 102/195 (52%), Gaps = 23/195 (11%)
Query: 21 FLLSALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG 80
F + K++ +GRVI E++ FY++NTY PN G + + R ++WD Q ++ + +
Sbjct: 184 FGIGIAKHDNEGRVITLEYDQFYIVNTYIPNAGTRGLQRLDYRIKEWDVDFQAYLEKLNA 243
Query: 81 -KPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKE 139
KP+IWCGDLNV+H EID+ +P K + GFTI ER F L++
Sbjct: 244 TKPIIWCGDLNVAHTEIDLKNP---------------KTNKKSAGFTIEERTSFSNFLEK 288
Query: 140 GRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGI 199
G +D+YR + K+ F WS G+ + R+DYF+VS+ L D I +
Sbjct: 289 G-YVDSYRHFNPGKEGSYTF-WSYLGGGRSKNVGWRLDYFVVSKRLMDSIKISPFHRTSV 346
Query: 200 ELEGFYGSDHCPVSL 214
GSDHCP+ +
Sbjct: 347 -----MGSDHCPIGV 356
>gi|281417190|ref|ZP_06248210.1| exodeoxyribonuclease III Xth [Clostridium thermocellum JW20]
gi|281408592|gb|EFB38850.1| exodeoxyribonuclease III Xth [Clostridium thermocellum JW20]
Length = 251
Score = 111 bits (277), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 69/191 (36%), Positives = 103/191 (53%), Gaps = 26/191 (13%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIW 85
+++ +GRVI EF+ +YL+N Y PN K+E R KW+ + +++ K P+I
Sbjct: 85 EHDREGRVITLEFDNYYLVNVYTPNA--KKELERLDYRMKWEDDFRNYLVGLKAKKPVIV 142
Query: 86 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 145
CGD+NV+H+EID+ +PE N+ GFT ER +F +L G ID
Sbjct: 143 CGDMNVAHKEIDLKNPE------------SNRR---SAGFTDEERAKFTELLNAG-FIDT 186
Query: 146 YRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 205
+RF + +K + WS + R RIDYF VSEELKDR+++ + +
Sbjct: 187 FRFFYPDKTGAYTW-WSYMFNARARNAGWRIDYFCVSEELKDRLVSASIH------DDVM 239
Query: 206 GSDHCPVSLEL 216
GSDHCPV L++
Sbjct: 240 GSDHCPVELQI 250
>gi|255993955|ref|ZP_05427090.1| exodeoxyribonuclease III [Eubacterium saphenum ATCC 49989]
gi|255993623|gb|EEU03712.1| exodeoxyribonuclease III [Eubacterium saphenum ATCC 49989]
Length = 252
Score = 111 bits (277), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 68/191 (35%), Positives = 107/191 (56%), Gaps = 26/191 (13%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIW 85
+++ +GRV+ A+F+ FYL+N Y PN+ K E R+ W+ +++V++ + KP+I
Sbjct: 85 EHDEEGRVVTADFKDFYLVNVYVPNS--KPELARLDYRQHWEDDFRDYVVKLNKEKPVII 142
Query: 86 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 145
CGDLNV+H EID+ +P K + PGFT ER++F +L+ G D
Sbjct: 143 CGDLNVAHTEIDLKNP---------------KTNRRNPGFTDEEREKFTELLEAG-FTDT 186
Query: 146 YRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 205
+R+ + +K+ + WS + RIDYF+VS ++KD+I ++ L Y
Sbjct: 187 FRYKYPDKEGAYTW-WSYRFNARKNNAGWRIDYFLVSNDVKDKIEDAKI------LSDVY 239
Query: 206 GSDHCPVSLEL 216
GSDHCPV LEL
Sbjct: 240 GSDHCPVVLEL 250
>gi|125972979|ref|YP_001036889.1| exodeoxyribonuclease III Xth [Clostridium thermocellum ATCC 27405]
gi|256004776|ref|ZP_05429751.1| exodeoxyribonuclease III Xth [Clostridium thermocellum DSM 2360]
gi|385779105|ref|YP_005688270.1| exodeoxyribonuclease III Xth [Clostridium thermocellum DSM 1313]
gi|419721683|ref|ZP_14248840.1| exodeoxyribonuclease III [Clostridium thermocellum AD2]
gi|419725225|ref|ZP_14252277.1| exodeoxyribonuclease III [Clostridium thermocellum YS]
gi|125713204|gb|ABN51696.1| exodeoxyribonuclease III Xth [Clostridium thermocellum ATCC 27405]
gi|255991226|gb|EEU01333.1| exodeoxyribonuclease III Xth [Clostridium thermocellum DSM 2360]
gi|316940785|gb|ADU74819.1| exodeoxyribonuclease III Xth [Clostridium thermocellum DSM 1313]
gi|380771412|gb|EIC05280.1| exodeoxyribonuclease III [Clostridium thermocellum YS]
gi|380782260|gb|EIC11901.1| exodeoxyribonuclease III [Clostridium thermocellum AD2]
Length = 251
Score = 111 bits (277), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 69/191 (36%), Positives = 103/191 (53%), Gaps = 26/191 (13%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIW 85
+++ +GRVI EF+ +YL+N Y PN K+E R KW+ + +++ K P+I
Sbjct: 85 EHDREGRVITLEFDNYYLVNVYTPNA--KKELERLDYRMKWEDDFRNYLVGLKAKKPVIV 142
Query: 86 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 145
CGD+NV+H+EID+ +PE N+ GFT ER +F +L G ID
Sbjct: 143 CGDMNVAHKEIDLKNPE------------SNRR---SAGFTDEERAKFTELLNAG-FIDT 186
Query: 146 YRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 205
+RF + +K + WS + R RIDYF VSEELKDR+++ + +
Sbjct: 187 FRFFYPDKTGAYTW-WSYMFNARARNAGWRIDYFCVSEELKDRLVSASIH------DDVM 239
Query: 206 GSDHCPVSLEL 216
GSDHCPV L++
Sbjct: 240 GSDHCPVELQI 250
>gi|427406978|ref|ZP_18897183.1| exodeoxyribonuclease III (xth) [Selenomonas sp. F0473]
gi|425707453|gb|EKU70497.1| exodeoxyribonuclease III (xth) [Selenomonas sp. F0473]
Length = 250
Score = 111 bits (277), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 70/196 (35%), Positives = 101/196 (51%), Gaps = 26/196 (13%)
Query: 23 LSALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGK 81
+ A +++ +GRVI EFE YL+ Y PN K R W+ + F+L + K
Sbjct: 80 IGAPEHDDEGRVITMEFEELYLVTVYTPNA--KRALERLDYRMAWEDAFRAFLLNLRAKK 137
Query: 82 PLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGR 141
P++ CGDLNV+H+EID+ +P K + GFT ER +FG +L G
Sbjct: 138 PVVVCGDLNVAHKEIDLKNP---------------KSNRHNAGFTDEERGKFGELLAAG- 181
Query: 142 LIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIEL 201
+D +R L+ ++ + WS + RIDYF+VSEEL+ R+ A E+
Sbjct: 182 FVDTFRALYPDRRGAYTW-WSYLRHARETNAGWRIDYFLVSEELRGRVAAAEIHAD---- 236
Query: 202 EGFYGSDHCPVSLELS 217
+GSDHCPVSL LS
Sbjct: 237 --IFGSDHCPVSLTLS 250
>gi|46908012|ref|YP_014401.1| exodeoxyribonuclease [Listeria monocytogenes serotype 4b str.
F2365]
gi|47094151|ref|ZP_00231871.1| exodeoxyribonuclease [Listeria monocytogenes str. 4b H7858]
gi|217964070|ref|YP_002349748.1| exodeoxyribonuclease III [Listeria monocytogenes HCC23]
gi|226224385|ref|YP_002758492.1| 3'-exo-deoxyribonuclease exoA [Listeria monocytogenes serotype 4b
str. CLIP 80459]
gi|254826392|ref|ZP_05231393.1| exodeoxyribonuclease [Listeria monocytogenes FSL J1-194]
gi|254933631|ref|ZP_05266990.1| exodeoxyribonuclease [Listeria monocytogenes HPB2262]
gi|255521086|ref|ZP_05388323.1| 3'-exo-deoxyribonuclease exoA [Listeria monocytogenes FSL J1-175]
gi|300766428|ref|ZP_07076383.1| exodeoxyribonuclease [Listeria monocytogenes FSL N1-017]
gi|386008552|ref|YP_005926830.1| exodeoxyribonuclease [Listeria monocytogenes L99]
gi|386027157|ref|YP_005947933.1| putative 3'-exo-deoxyribonuclease III [Listeria monocytogenes M7]
gi|386732521|ref|YP_006206017.1| exodeoxyribonuclease III [Listeria monocytogenes 07PF0776]
gi|404281392|ref|YP_006682290.1| exodeoxyribonuclease [Listeria monocytogenes SLCC2755]
gi|404287210|ref|YP_006693796.1| exodeoxyribonuclease [Listeria monocytogenes serotype 7 str.
SLCC2482]
gi|405750132|ref|YP_006673598.1| exodeoxyribonuclease [Listeria monocytogenes ATCC 19117]
gi|405753007|ref|YP_006676472.1| exodeoxyribonuclease [Listeria monocytogenes SLCC2378]
gi|405755941|ref|YP_006679405.1| exodeoxyribonuclease [Listeria monocytogenes SLCC2540]
gi|406704564|ref|YP_006754918.1| exodeoxyribonuclease [Listeria monocytogenes L312]
gi|417315430|ref|ZP_12102109.1| exodeoxyribonuclease III [Listeria monocytogenes J1816]
gi|422809864|ref|ZP_16858275.1| Exodeoxyribonuclease III [Listeria monocytogenes FSL J1-208]
gi|424714659|ref|YP_007015374.1| Exodeoxyribonuclease [Listeria monocytogenes serotype 4b str.
LL195]
gi|424823542|ref|ZP_18248555.1| Exodeoxyribonuclease III [Listeria monocytogenes str. Scott A]
gi|46881282|gb|AAT04578.1| exodeoxyribonuclease [Listeria monocytogenes serotype 4b str.
F2365]
gi|47017476|gb|EAL08289.1| exodeoxyribonuclease [Listeria monocytogenes str. 4b H7858]
gi|217333340|gb|ACK39134.1| exodeoxyribonuclease III [Listeria monocytogenes HCC23]
gi|225876847|emb|CAS05556.1| Putative 3'-exo-deoxyribonuclease exoA [Listeria monocytogenes
serotype 4b str. CLIP 80459]
gi|293585194|gb|EFF97226.1| exodeoxyribonuclease [Listeria monocytogenes HPB2262]
gi|293595632|gb|EFG03393.1| exodeoxyribonuclease [Listeria monocytogenes FSL J1-194]
gi|300512852|gb|EFK39944.1| exodeoxyribonuclease [Listeria monocytogenes FSL N1-017]
gi|307571362|emb|CAR84541.1| exodeoxyribonuclease [Listeria monocytogenes L99]
gi|328466425|gb|EGF37573.1| exodeoxyribonuclease III [Listeria monocytogenes J1816]
gi|332312222|gb|EGJ25317.1| Exodeoxyribonuclease III [Listeria monocytogenes str. Scott A]
gi|336023738|gb|AEH92875.1| putative 3'-exo-deoxyribonuclease III [Listeria monocytogenes M7]
gi|378752065|gb|EHY62652.1| Exodeoxyribonuclease III [Listeria monocytogenes FSL J1-208]
gi|384391279|gb|AFH80349.1| exodeoxyribonuclease III [Listeria monocytogenes 07PF0776]
gi|404219332|emb|CBY70696.1| exodeoxyribonuclease [Listeria monocytogenes ATCC 19117]
gi|404222207|emb|CBY73570.1| exodeoxyribonuclease [Listeria monocytogenes SLCC2378]
gi|404225141|emb|CBY76503.1| exodeoxyribonuclease [Listeria monocytogenes SLCC2540]
gi|404228027|emb|CBY49432.1| exodeoxyribonuclease [Listeria monocytogenes SLCC2755]
gi|404246139|emb|CBY04364.1| exodeoxyribonuclease [Listeria monocytogenes serotype 7 str.
SLCC2482]
gi|406361594|emb|CBY67867.1| exodeoxyribonuclease [Listeria monocytogenes L312]
gi|424013843|emb|CCO64383.1| Exodeoxyribonuclease [Listeria monocytogenes serotype 4b str.
LL195]
Length = 251
Score = 111 bits (277), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 69/197 (35%), Positives = 104/197 (52%), Gaps = 28/197 (14%)
Query: 23 LSALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GK 81
L +++ +GRVI EFE F+++ Y PN+ + E R ++ I E+V K
Sbjct: 80 LGVPEHDTEGRVITLEFEEFFMVTVYTPNS--QAELKRLDYRMTFEDAILEYVKNLDKTK 137
Query: 82 PLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGR 141
P++ CGDLNV+HEEID+ +P K + GF+ ER +F A L G
Sbjct: 138 PVVLCGDLNVAHEEIDLKNP---------------KTNRKNAGFSDEERAKFSAFLDAG- 181
Query: 142 LIDAYRFLHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIE 200
ID++R+ + D+ +S WS + R RIDYF+VSE LKD+++ ++ +
Sbjct: 182 FIDSFRYFY--PDLTDAYSWWSYRMNARARNTGWRIDYFVVSERLKDKLVDAKIHADVL- 238
Query: 201 LEGFYGSDHCPVSLELS 217
GSDHCPV LEL+
Sbjct: 239 -----GSDHCPVELELN 250
>gi|254829588|ref|ZP_05234275.1| exodeoxyribonuclease [Listeria monocytogenes FSL N3-165]
gi|284802226|ref|YP_003414091.1| hypothetical protein LM5578_1982 [Listeria monocytogenes 08-5578]
gi|284995368|ref|YP_003417136.1| hypothetical protein LM5923_1933 [Listeria monocytogenes 08-5923]
gi|386054035|ref|YP_005971593.1| exodeoxyribonuclease III [Listeria monocytogenes Finland 1998]
gi|258602005|gb|EEW15330.1| exodeoxyribonuclease [Listeria monocytogenes FSL N3-165]
gi|284057788|gb|ADB68729.1| hypothetical protein LM5578_1982 [Listeria monocytogenes 08-5578]
gi|284060835|gb|ADB71774.1| hypothetical protein LM5923_1933 [Listeria monocytogenes 08-5923]
gi|346646686|gb|AEO39311.1| exodeoxyribonuclease III [Listeria monocytogenes Finland 1998]
Length = 251
Score = 111 bits (277), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 69/197 (35%), Positives = 105/197 (53%), Gaps = 28/197 (14%)
Query: 23 LSALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGK 81
L +++ +GRVI EFE F+++ Y PN+ + E R ++ I E+V + K
Sbjct: 80 LGIPEHDTEGRVITLEFEEFFMVTVYTPNS--QAELKRLDYRMTFEDAILEYVKNLDNTK 137
Query: 82 PLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGR 141
P++ CGDLNV+HEEID+ +P K + GF+ ER +F A L G
Sbjct: 138 PVVLCGDLNVAHEEIDLKNP---------------KTNRKNAGFSDEERAKFSAFLDAG- 181
Query: 142 LIDAYRFLHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIE 200
ID++R+ + D+ +S WS + R RIDYF+VSE LKD+++ ++ +
Sbjct: 182 FIDSFRYFY--PDLTDAYSWWSYRMNARARNTGWRIDYFVVSERLKDKLVDAKIHADVL- 238
Query: 201 LEGFYGSDHCPVSLELS 217
GSDHCPV LEL+
Sbjct: 239 -----GSDHCPVELELN 250
>gi|16803822|ref|NP_465307.1| hypothetical protein lmo1782 [Listeria monocytogenes EGD-e]
gi|16411236|emb|CAC99860.1| lmo1782 [Listeria monocytogenes EGD-e]
Length = 251
Score = 111 bits (277), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 68/193 (35%), Positives = 104/193 (53%), Gaps = 28/193 (14%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIW 85
+++ +GRVI EFE F+++ Y PN+ + E R ++ I E+V + KP++
Sbjct: 84 EHDTEGRVITLEFEEFFMVTVYTPNS--QAELKRLDYRMTFEDAILEYVKNLDNTKPVVL 141
Query: 86 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 145
CGDLNV+HEEID+ +P K + GF+ ER +F A L G ID+
Sbjct: 142 CGDLNVAHEEIDLKNP---------------KTNRKNAGFSDEERAKFSAFLDAG-FIDS 185
Query: 146 YRFLHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGF 204
+R+ + D+ +S WS + R RIDYF+VSE LKD+++ ++ +
Sbjct: 186 FRYFY--PDLTDAYSWWSYRMNARARNTGWRIDYFVVSERLKDKLVDAKIHADVL----- 238
Query: 205 YGSDHCPVSLELS 217
GSDHCPV LEL+
Sbjct: 239 -GSDHCPVELELN 250
>gi|290893090|ref|ZP_06556079.1| exodeoxyribonuclease [Listeria monocytogenes FSL J2-071]
gi|404408223|ref|YP_006690938.1| exodeoxyribonuclease [Listeria monocytogenes SLCC2376]
gi|290557450|gb|EFD90975.1| exodeoxyribonuclease [Listeria monocytogenes FSL J2-071]
gi|404242372|emb|CBY63772.1| exodeoxyribonuclease [Listeria monocytogenes SLCC2376]
Length = 251
Score = 111 bits (277), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 69/197 (35%), Positives = 104/197 (52%), Gaps = 28/197 (14%)
Query: 23 LSALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GK 81
L +++ +GRVI EFE F+++ Y PN+ + E R ++ I E+V K
Sbjct: 80 LGVPEHDTEGRVITLEFEEFFMVTVYTPNS--QAELKRLDYRMTFEDAILEYVKNLDKTK 137
Query: 82 PLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGR 141
P++ CGDLNV+HEEID+ +P K + GF+ ER +F A L G
Sbjct: 138 PVVLCGDLNVAHEEIDLKNP---------------KTNRKNAGFSDEERAKFSAFLDAG- 181
Query: 142 LIDAYRFLHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIE 200
ID++R+ + D+ +S WS + R RIDYF+VSE LKD+++ ++ +
Sbjct: 182 FIDSFRYFY--PDLTDAYSWWSYRMNARARNTGWRIDYFVVSERLKDKLVDAKIHADVL- 238
Query: 201 LEGFYGSDHCPVSLELS 217
GSDHCPV LEL+
Sbjct: 239 -----GSDHCPVELELN 250
>gi|404413860|ref|YP_006699447.1| exodeoxyribonuclease [Listeria monocytogenes SLCC7179]
gi|404239559|emb|CBY60960.1| exodeoxyribonuclease [Listeria monocytogenes SLCC7179]
gi|441474667|emb|CCQ24421.1| Exodeoxyribonuclease [Listeria monocytogenes N53-1]
Length = 251
Score = 111 bits (277), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 70/197 (35%), Positives = 104/197 (52%), Gaps = 28/197 (14%)
Query: 23 LSALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GK 81
L +++ +GRVI EFE F+++ Y PN+ + E R ++ I E+V K
Sbjct: 80 LGIPEHDTEGRVITLEFEEFFMVTVYTPNS--QAELKRLDYRMTFEDAILEYVKNLDKTK 137
Query: 82 PLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGR 141
P++ CGDLNV+HEEID+ +P K + GF+ ER +F A L G
Sbjct: 138 PVVLCGDLNVAHEEIDLKNP---------------KTNRKNAGFSDEERAKFSAFLDAG- 181
Query: 142 LIDAYRFLHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIE 200
ID++R+ + D+ +S WS + R RIDYFIVSE LKD+++ ++ +
Sbjct: 182 FIDSFRYFY--PDLTDAYSWWSYRMNARARNTGWRIDYFIVSERLKDKLVDAKIHADVL- 238
Query: 201 LEGFYGSDHCPVSLELS 217
GSDHCPV LEL+
Sbjct: 239 -----GSDHCPVELELN 250
>gi|417317886|ref|ZP_12104489.1| exodeoxyribonuclease III [Listeria monocytogenes J1-220]
gi|328473849|gb|EGF44679.1| exodeoxyribonuclease III [Listeria monocytogenes J1-220]
Length = 225
Score = 111 bits (277), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 69/197 (35%), Positives = 104/197 (52%), Gaps = 28/197 (14%)
Query: 23 LSALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GK 81
L +++ +GRVI EFE F+++ Y PN+ + E R ++ I E+V K
Sbjct: 54 LGVPEHDTEGRVITLEFEEFFMVTVYTPNS--QAELKRLDYRMTFEDAILEYVKNLDKTK 111
Query: 82 PLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGR 141
P++ CGDLNV+HEEID+ +P K + GF+ ER +F A L G
Sbjct: 112 PVVLCGDLNVAHEEIDLKNP---------------KTNRKNAGFSDEERAKFSAFLDAG- 155
Query: 142 LIDAYRFLHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIE 200
ID++R+ + D+ +S WS + R RIDYF+VSE LKD+++ ++ +
Sbjct: 156 FIDSFRYFY--PDLTDAYSWWSYRMNARARNTGWRIDYFVVSERLKDKLVDAKIHADVL- 212
Query: 201 LEGFYGSDHCPVSLELS 217
GSDHCPV LEL+
Sbjct: 213 -----GSDHCPVELELN 224
>gi|169334284|ref|ZP_02861477.1| hypothetical protein ANASTE_00682 [Anaerofustis stercorihominis DSM
17244]
gi|169259001|gb|EDS72967.1| exodeoxyribonuclease III [Anaerofustis stercorihominis DSM 17244]
Length = 251
Score = 110 bits (276), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 69/192 (35%), Positives = 107/192 (55%), Gaps = 28/192 (14%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIW 85
K+ +GRVI AE+E FYL+N Y PN+ + E R +W+ +++ + KP+I
Sbjct: 84 KFSKEGRVITAEYENFYLVNVYTPNS--QNELKRLDYRMEWEDYFADYLCELDKVKPVIM 141
Query: 86 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 145
CGDLNV+H EID+ +P+ NK++ GFTI ER + ++LK G +D+
Sbjct: 142 CGDLNVAHREIDLKNPK------------TNKKN---AGFTIEERDKMTSLLKRG-FVDS 185
Query: 146 YRFLHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGF 204
YR+L+ D++ ++ WS + RIDYFIVS+ +KD+I ++
Sbjct: 186 YRYLY--PDIEGVYTWWSYRFNARKNNAGWRIDYFIVSDRIKDKIKDVKI------FSDV 237
Query: 205 YGSDHCPVSLEL 216
GSDHCPV L++
Sbjct: 238 MGSDHCPVLLDI 249
>gi|228940815|ref|ZP_04103375.1| Exodeoxyribonuclease [Bacillus thuringiensis serovar berliner ATCC
10792]
gi|228973735|ref|ZP_04134313.1| Exodeoxyribonuclease [Bacillus thuringiensis serovar thuringiensis
str. T01001]
gi|228980291|ref|ZP_04140602.1| Exodeoxyribonuclease [Bacillus thuringiensis Bt407]
gi|384187741|ref|YP_005573637.1| exodeoxyribonuclease III [Bacillus thuringiensis serovar chinensis
CT-43]
gi|410676060|ref|YP_006928431.1| exodeoxyribonuclease ExoA [Bacillus thuringiensis Bt407]
gi|452200118|ref|YP_007480199.1| Exodeoxyribonuclease III [Bacillus thuringiensis serovar
thuringiensis str. IS5056]
gi|228779396|gb|EEM27652.1| Exodeoxyribonuclease [Bacillus thuringiensis Bt407]
gi|228785981|gb|EEM33982.1| Exodeoxyribonuclease [Bacillus thuringiensis serovar thuringiensis
str. T01001]
gi|228818829|gb|EEM64894.1| Exodeoxyribonuclease [Bacillus thuringiensis serovar berliner ATCC
10792]
gi|326941450|gb|AEA17346.1| exodeoxyribonuclease III [Bacillus thuringiensis serovar chinensis
CT-43]
gi|409175189|gb|AFV19494.1| exodeoxyribonuclease ExoA [Bacillus thuringiensis Bt407]
gi|452105511|gb|AGG02451.1| Exodeoxyribonuclease III [Bacillus thuringiensis serovar
thuringiensis str. IS5056]
Length = 252
Score = 110 bits (276), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 68/198 (34%), Positives = 109/198 (55%), Gaps = 30/198 (15%)
Query: 23 LSALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GK 81
L +++ +GR+I EFE FY++ Y PN+ K R KW+ + ++ + K
Sbjct: 81 LGIEEHDQEGRLITLEFEDFYMITLYTPNS--KRGLERLDYRMKWEDDFRSYIKRLDEKK 138
Query: 82 PLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGR 141
P+I+CGDLNV+H+EID+ +P K + PGF+ ER++F IL+EG
Sbjct: 139 PVIFCGDLNVAHKEIDLKNP---------------KSNRKNPGFSDEEREKFTCILEEG- 182
Query: 142 LIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRM--RIDYFIVSEELKDRIIACEMQGHGI 199
+D YR+L+ + + +SW +G R K + R+DYF+VSE +KD+I ++ +
Sbjct: 183 FVDTYRYLY--PNQEGAYSWWSYRMGA-RAKNIGWRLDYFVVSERMKDQITEAKINSEVM 239
Query: 200 ELEGFYGSDHCPVSLELS 217
GSDHCPV L ++
Sbjct: 240 ------GSDHCPVELHIN 251
>gi|89097572|ref|ZP_01170461.1| Exodeoxyribonuclease III [Bacillus sp. NRRL B-14911]
gi|89087868|gb|EAR66980.1| Exodeoxyribonuclease III [Bacillus sp. NRRL B-14911]
Length = 251
Score = 110 bits (276), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 68/196 (34%), Positives = 109/196 (55%), Gaps = 26/196 (13%)
Query: 23 LSALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGK 81
++ + EP+GR + EFE FYLLN Y PN+ K + R +W+ I+E++L+ K
Sbjct: 80 IAGRETEPEGRSLTLEFENFYLLNVYTPNS--KRDLARLPYRLEWEDEIREYILELEQKK 137
Query: 82 PLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGR 141
P+I CGDLNV+H +ID+ + + + G GFT ER + ++L EG
Sbjct: 138 PVILCGDLNVAHLDIDLKNA---------------RSNRGNSGFTDEERGKMTSLLSEG- 181
Query: 142 LIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIEL 201
+D++R+L+ E++ + WS + R RIDYFIVS++LK+ I+ ++
Sbjct: 182 FVDSFRYLYPEQEGAYTW-WSYMAKVRERNIGWRIDYFIVSDKLKEHILDSKIYCD---- 236
Query: 202 EGFYGSDHCPVSLELS 217
GSDHCP+ LE++
Sbjct: 237 --IMGSDHCPIMLEMA 250
>gi|326202355|ref|ZP_08192224.1| exodeoxyribonuclease III [Clostridium papyrosolvens DSM 2782]
gi|325987473|gb|EGD48300.1| exodeoxyribonuclease III [Clostridium papyrosolvens DSM 2782]
Length = 253
Score = 110 bits (276), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 71/191 (37%), Positives = 104/191 (54%), Gaps = 26/191 (13%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIW 85
+++ +GRVI EFE F+L+N Y PN+ K E + R KW+ +E++ Q KP+I
Sbjct: 85 EHDNEGRVITLEFEEFFLVNVYTPNS--KRELERLEYRMKWEDDFREYLKQLEQTKPVII 142
Query: 86 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 145
CGD+NV+H+EID+ +P NK GFT+ ER++F +L+ G +D
Sbjct: 143 CGDMNVAHQEIDLKNPR------------SNKR---SAGFTMEEREKFSQLLEHG-FVDT 186
Query: 146 YRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 205
+R L+ +K + WS + + RIDYF VS LKDRI A E+ +
Sbjct: 187 FRMLYPDKTGAYTW-WSYMFKSREKNAGWRIDYFCVSGALKDRIEAAEIYSDTM------ 239
Query: 206 GSDHCPVSLEL 216
GSDHCPV L +
Sbjct: 240 GSDHCPVGLTI 250
>gi|423418359|ref|ZP_17395448.1| exodeoxyribonuclease [Bacillus cereus BAG3X2-1]
gi|401106632|gb|EJQ14593.1| exodeoxyribonuclease [Bacillus cereus BAG3X2-1]
Length = 252
Score = 110 bits (276), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 70/197 (35%), Positives = 106/197 (53%), Gaps = 30/197 (15%)
Query: 23 LSALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK- 81
L +++ +GRVI EFE F+++ Y PN+ K R KW+ + ++ + K
Sbjct: 81 LGIEEHDQEGRVITLEFEDFHMITLYTPNS--KRGLERLDYRMKWEDDFRAYIKRLDKKK 138
Query: 82 PLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGR 141
P+I+CGDLNVSH+EID+ +P K + PGF+ ER++F IL+EG
Sbjct: 139 PVIFCGDLNVSHKEIDLKNP---------------KSNRKNPGFSDEEREKFTKILEEG- 182
Query: 142 LIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRM--RIDYFIVSEELKDRIIACEMQGHGI 199
+D YRFL+ E+ + +SW +G R K + R+DYF+ SE LK +I ++
Sbjct: 183 FVDTYRFLYPEQ--EGAYSWWSYRMGA-RAKNIGWRLDYFVTSERLKHKITDAKINSE-- 237
Query: 200 ELEGFYGSDHCPVSLEL 216
GSDHCPV L +
Sbjct: 238 ----IMGSDHCPVELHM 250
>gi|254854529|ref|ZP_05243877.1| exodeoxyribonuclease [Listeria monocytogenes FSL R2-503]
gi|258607929|gb|EEW20537.1| exodeoxyribonuclease [Listeria monocytogenes FSL R2-503]
Length = 251
Score = 110 bits (276), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 68/193 (35%), Positives = 103/193 (53%), Gaps = 28/193 (14%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIW 85
+++ +GRVI EFE F+++ Y PN+ + E R ++ I E+V KP++
Sbjct: 84 EHDTEGRVITLEFEEFFMVTVYTPNS--QAELKRLDYRMTFEDAILEYVKNLDKTKPVVL 141
Query: 86 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 145
CGDLNV+HEEID+ +P K + GF+ ER +F A L G ID+
Sbjct: 142 CGDLNVAHEEIDLKNP---------------KTNRKNAGFSDEERAKFSAFLDAG-FIDS 185
Query: 146 YRFLHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGF 204
+R+ + D+ +S WS + R RIDYF+VSE LKD+++ ++ +
Sbjct: 186 FRYFY--PDLTDAYSWWSYRMNARARNTGWRIDYFVVSERLKDKLVDAKIHADVL----- 238
Query: 205 YGSDHCPVSLELS 217
GSDHCPV LEL+
Sbjct: 239 -GSDHCPVELELN 250
>gi|229157316|ref|ZP_04285394.1| Exodeoxyribonuclease [Bacillus cereus ATCC 4342]
gi|228626043|gb|EEK82792.1| Exodeoxyribonuclease [Bacillus cereus ATCC 4342]
Length = 252
Score = 110 bits (276), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 67/197 (34%), Positives = 108/197 (54%), Gaps = 28/197 (14%)
Query: 23 LSALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GK 81
L +++ +GRVI EFE FY++ Y PN+ K R KW+ + ++ + K
Sbjct: 81 LGIEEHDQEGRVITLEFEDFYIITLYTPNS--KRGLERLDYRMKWEDDFRVYIKRLDEKK 138
Query: 82 PLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGR 141
P+++CGDLNV+H+EID+ +P K + PGF+ ER++F IL+EG
Sbjct: 139 PVVFCGDLNVAHKEIDLKNP---------------KSNRKNPGFSDEEREKFTCILEEG- 182
Query: 142 LIDAYRFLHKEKDMDCGFSWSGNPIG-KYRGKRMRIDYFIVSEELKDRIIACEMQGHGIE 200
ID YR+L+ + + +SW +G + + R+DYF+VSE +KD+I ++ +
Sbjct: 183 FIDTYRYLY--PNQEGAYSWWSYRMGARVKNIGWRLDYFVVSERMKDQITEAKINSEVM- 239
Query: 201 LEGFYGSDHCPVSLELS 217
GSDHCPV L ++
Sbjct: 240 -----GSDHCPVELHIN 251
>gi|47097522|ref|ZP_00235061.1| exodeoxyribonuclease [Listeria monocytogenes str. 1/2a F6854]
gi|254914076|ref|ZP_05264088.1| exodeoxyribonuclease [Listeria monocytogenes J2818]
gi|254938390|ref|ZP_05270087.1| exodeoxyribonuclease [Listeria monocytogenes F6900]
gi|386044090|ref|YP_005962895.1| exodeoxyribonuclease III [Listeria monocytogenes 10403S]
gi|386047434|ref|YP_005965766.1| exodeoxyribonuclease III [Listeria monocytogenes J0161]
gi|386050759|ref|YP_005968750.1| exodeoxyribonuclease [Listeria monocytogenes FSL R2-561]
gi|404284278|ref|YP_006685175.1| exodeoxyribonuclease [Listeria monocytogenes SLCC2372]
gi|404411083|ref|YP_006696671.1| exodeoxyribonuclease [Listeria monocytogenes SLCC5850]
gi|405758833|ref|YP_006688109.1| exodeoxyribonuclease [Listeria monocytogenes SLCC2479]
gi|47014105|gb|EAL05099.1| exodeoxyribonuclease [Listeria monocytogenes str. 1/2a F6854]
gi|258611002|gb|EEW23610.1| exodeoxyribonuclease [Listeria monocytogenes F6900]
gi|293592096|gb|EFG00431.1| exodeoxyribonuclease [Listeria monocytogenes J2818]
gi|345534425|gb|AEO03866.1| exodeoxyribonuclease III [Listeria monocytogenes J0161]
gi|345537324|gb|AEO06764.1| exodeoxyribonuclease III [Listeria monocytogenes 10403S]
gi|346424605|gb|AEO26130.1| exodeoxyribonuclease [Listeria monocytogenes FSL R2-561]
gi|404230909|emb|CBY52313.1| exodeoxyribonuclease [Listeria monocytogenes SLCC5850]
gi|404233780|emb|CBY55183.1| exodeoxyribonuclease [Listeria monocytogenes SLCC2372]
gi|404236715|emb|CBY58117.1| exodeoxyribonuclease [Listeria monocytogenes SLCC2479]
Length = 251
Score = 110 bits (276), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 68/193 (35%), Positives = 103/193 (53%), Gaps = 28/193 (14%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIW 85
+++ +GRVI EFE F+++ Y PN+ + E R ++ I E+V KP++
Sbjct: 84 EHDTEGRVITLEFEEFFMVTVYTPNS--QAELKRLDYRMTFEDAILEYVKNLDKTKPVVL 141
Query: 86 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 145
CGDLNV+HEEID+ +P K + GF+ ER +F A L G ID+
Sbjct: 142 CGDLNVAHEEIDLKNP---------------KTNRKNAGFSDEERAKFSAFLDAG-FIDS 185
Query: 146 YRFLHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGF 204
+R+ + D+ +S WS + R RIDYF+VSE LKD+++ ++ +
Sbjct: 186 FRYFY--PDLTDAYSWWSYRMNARARNTGWRIDYFVVSERLKDKLVDAKIHADVL----- 238
Query: 205 YGSDHCPVSLELS 217
GSDHCPV LEL+
Sbjct: 239 -GSDHCPVELELN 250
>gi|398816273|ref|ZP_10574926.1| exodeoxyribonuclease III [Brevibacillus sp. BC25]
gi|398032975|gb|EJL26295.1| exodeoxyribonuclease III [Brevibacillus sp. BC25]
Length = 254
Score = 110 bits (275), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 69/192 (35%), Positives = 102/192 (53%), Gaps = 26/192 (13%)
Query: 28 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWC 86
+EP+GRVI EF+ FYL+ Y PN K + + R +W+ R + ++LQ KP++ C
Sbjct: 86 HEPEGRVITLEFQDFYLVTVYTPNA--KRDLSRLDYRLEWEDRFRNYLLQLDAKKPVVVC 143
Query: 87 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 146
GDLNV+H+EID+ + K + GFT ER++ ++L G +D Y
Sbjct: 144 GDLNVAHQEIDLKNA---------------KSNRNNSGFTPEEREKMTSLLAAG-FVDTY 187
Query: 147 RFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYG 206
R+ + ++ D WS P + R RIDYF+ SE L A + G GI+ + G
Sbjct: 188 RYFYPDQ-TDAYTWWSFMPKVRERNIGWRIDYFLASERL-----APSLLGAGIDSQVL-G 240
Query: 207 SDHCPVSLELSE 218
SDHCPV LE +
Sbjct: 241 SDHCPVVLEFGK 252
>gi|406837825|ref|ZP_11097419.1| exodeoxyribonuclease, partial [Lactobacillus vini DSM 20605]
Length = 181
Score = 110 bits (275), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 71/193 (36%), Positives = 105/193 (54%), Gaps = 26/193 (13%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIW 85
+++ +GRVI E+E FYL++ Y PN+ K + F R KW+ Q ++ + KP+I
Sbjct: 14 EFDHEGRVITLEYEQFYLVDCYTPNSQQKLKRLDF--RLKWELAFQTYLKKLDQTKPVIL 71
Query: 86 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 145
CGDLNV+H++ID+ + K + GF+ ER+ ++L +G ID+
Sbjct: 72 CGDLNVAHQKIDLKNW---------------KTNRHNAGFSDQERQAMTSLLDKG-FIDS 115
Query: 146 YRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 205
+RFLH E + WS + RIDYFIVS+ LK+RI+ ++ L Y
Sbjct: 116 FRFLHPETTGIYSW-WSYRFHARENNAGWRIDYFIVSDRLKNRILKADI------LTNIY 168
Query: 206 GSDHCPVSLELSE 218
GSDHCPV LEL E
Sbjct: 169 GSDHCPVELELKE 181
>gi|423395948|ref|ZP_17373149.1| exodeoxyribonuclease [Bacillus cereus BAG2X1-1]
gi|423406828|ref|ZP_17383977.1| exodeoxyribonuclease [Bacillus cereus BAG2X1-3]
gi|401653690|gb|EJS71234.1| exodeoxyribonuclease [Bacillus cereus BAG2X1-1]
gi|401660118|gb|EJS77601.1| exodeoxyribonuclease [Bacillus cereus BAG2X1-3]
Length = 252
Score = 110 bits (275), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 68/197 (34%), Positives = 108/197 (54%), Gaps = 30/197 (15%)
Query: 23 LSALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-K 81
L +++ +GRVI EFE FY++ Y PN+ K R KW+ + ++ + K
Sbjct: 81 LGIEEHDQEGRVITLEFEDFYMITLYTPNS--KRGLERLDYRMKWEDDFRAYIKRLDEEK 138
Query: 82 PLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGR 141
P+I+CGDLNV+H+EID+ +P K + PGF+ ER++F +L+EG
Sbjct: 139 PVIFCGDLNVAHKEIDLKNP---------------KSNRKNPGFSDEEREKFTRVLEEG- 182
Query: 142 LIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRM--RIDYFIVSEELKDRIIACEMQGHGI 199
+D YR+L+ D + +SW +G R K + R+DYF+VSE +K++I ++ +
Sbjct: 183 FVDTYRYLY--PDQEGAYSWWSYRMGA-RAKNIGWRLDYFVVSERMKEQITDAKINSEVM 239
Query: 200 ELEGFYGSDHCPVSLEL 216
GSDHCPV L +
Sbjct: 240 ------GSDHCPVELHI 250
>gi|229018928|ref|ZP_04175771.1| Exodeoxyribonuclease [Bacillus cereus AH1273]
gi|229025172|ref|ZP_04181596.1| Exodeoxyribonuclease [Bacillus cereus AH1272]
gi|423390009|ref|ZP_17367235.1| exodeoxyribonuclease [Bacillus cereus BAG1X1-3]
gi|228736105|gb|EEL86676.1| Exodeoxyribonuclease [Bacillus cereus AH1272]
gi|228742371|gb|EEL92528.1| Exodeoxyribonuclease [Bacillus cereus AH1273]
gi|401640925|gb|EJS58651.1| exodeoxyribonuclease [Bacillus cereus BAG1X1-3]
Length = 252
Score = 110 bits (275), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 69/193 (35%), Positives = 105/193 (54%), Gaps = 30/193 (15%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIW 85
+++ +GRVI EFE F+++ Y PN+ K R KW+ + ++ + K P+I+
Sbjct: 85 EHDQEGRVITLEFEDFHMITLYTPNS--KRGLERLDYRMKWEDDFRAYIKRLDKKKPVIF 142
Query: 86 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 145
CGDLNVSH+EID+ +P K + PGF+ ER++F IL+EG +D
Sbjct: 143 CGDLNVSHKEIDLKNP---------------KSNRKNPGFSDEEREKFTKILEEG-FVDT 186
Query: 146 YRFLHKEKDMDCGFSWSGNPIGKYRGKRM--RIDYFIVSEELKDRIIACEMQGHGIELEG 203
YRFL+ E+ + +SW +G R K + R+DYF+ SE LK +I ++
Sbjct: 187 YRFLYPEQ--EGAYSWWSYRMGA-RAKNIGWRLDYFVTSERLKHKITDAKINSE------ 237
Query: 204 FYGSDHCPVSLEL 216
GSDHCPV L +
Sbjct: 238 IMGSDHCPVELHM 250
>gi|423518373|ref|ZP_17494854.1| exodeoxyribonuclease [Bacillus cereus HuA2-4]
gi|401161100|gb|EJQ68468.1| exodeoxyribonuclease [Bacillus cereus HuA2-4]
Length = 252
Score = 110 bits (275), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 67/198 (33%), Positives = 109/198 (55%), Gaps = 30/198 (15%)
Query: 23 LSALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GK 81
L +++ +GRVI EF+ FY++ Y PN+ E + R +W+ + ++ + K
Sbjct: 81 LGIEEHDQEGRVITLEFDDFYMITLYTPNSKRGLERVDY--RMEWEDDFRAYIKRLDEKK 138
Query: 82 PLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGR 141
P+++CGDLNV+H+EID+ +P K + PGF+ ER++F IL+EG
Sbjct: 139 PVVFCGDLNVAHKEIDLKNP---------------KSNRKNPGFSDEEREKFTRILEEG- 182
Query: 142 LIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRM--RIDYFIVSEELKDRIIACEMQGHGI 199
+D YR+L+ D + +SW +G R K + R+DYF+VSE +KD+I ++
Sbjct: 183 FVDTYRYLY--PDQEGAYSWWSYRMGA-RAKNIGWRLDYFVVSERMKDKITEAKINSE-- 237
Query: 200 ELEGFYGSDHCPVSLELS 217
GSDHCPV L ++
Sbjct: 238 ----IMGSDHCPVELHIN 251
>gi|337746485|ref|YP_004640647.1| ExoA protein [Paenibacillus mucilaginosus KNP414]
gi|336297674|gb|AEI40777.1| ExoA [Paenibacillus mucilaginosus KNP414]
Length = 259
Score = 110 bits (274), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 68/199 (34%), Positives = 98/199 (49%), Gaps = 26/199 (13%)
Query: 29 EPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCG 87
EP+GR+I EF+ FYL+ Y PN K + + R +W+ R + ++ KP+I CG
Sbjct: 85 EPEGRIITLEFDGFYLVTVYTPNA--KRDLSRLDYRLEWEDRFRRYIAGLDAVKPVILCG 142
Query: 88 DLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYR 147
DLNV+HEEID+ + K + G GFT ER++ +L G ID +R
Sbjct: 143 DLNVAHEEIDLKNA---------------KGNRGNSGFTAEERQKMTDLLGAG-FIDTFR 186
Query: 148 FLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGS 207
+ E+ D WS P + R RIDYF+ S L + ++ H + GS
Sbjct: 187 HFYPEQ-TDAYTWWSNMPKVRERNVGWRIDYFLASARLAPSLQDAQIHAHVL------GS 239
Query: 208 DHCPVSLELSEASSDSEKR 226
DHCPV L L+E + R
Sbjct: 240 DHCPVVLTLAEVPQAAAAR 258
>gi|392424943|ref|YP_006465937.1| exodeoxyribonuclease III [Desulfosporosinus acidiphilus SJ4]
gi|391354906|gb|AFM40605.1| exodeoxyribonuclease III [Desulfosporosinus acidiphilus SJ4]
Length = 253
Score = 110 bits (274), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 70/194 (36%), Positives = 108/194 (55%), Gaps = 26/194 (13%)
Query: 28 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWC 86
++ +GR+I E++ FYL+N YAPN+ + E + R W++ + +V S KP+I+C
Sbjct: 85 HDKEGRMITLEYDEFYLINLYAPNS--QAELARLEYRLTWEEDFRRYVQTLNSHKPVIFC 142
Query: 87 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 146
GDLNV+H+EID+ +P+ A + N GFT ER +F +L+ G ID +
Sbjct: 143 GDLNVAHQEIDLKNPQ---ANRRNA------------GFTDEERLKFSELLESG-FIDTF 186
Query: 147 RFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYG 206
R+L+ E+ D WS + R RIDYF +SE LKD + + E+ + G
Sbjct: 187 RYLYPEQK-DSYSWWSYRFNARVRNAGWRIDYFCMSERLKDSLQSAEIYTSVL------G 239
Query: 207 SDHCPVSLELSEAS 220
SDHCPV +E++ S
Sbjct: 240 SDHCPVGIEVNSFS 253
>gi|967268|gb|AAC47024.1| class II apurinic/apyrimidinic(AP)-endonuclease [Dictyostelium
discoideum]
Length = 361
Score = 110 bits (274), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 67/195 (34%), Positives = 101/195 (51%), Gaps = 23/195 (11%)
Query: 21 FLLSALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG 80
F + K++ +GRVI E+ FY++NTY PN G + + R ++WD Q ++ + +
Sbjct: 184 FGIGIAKHDNEGRVITLEYVQFYIVNTYIPNAGTRGLQRLDYRIKEWDVDFQAYLEKLNA 243
Query: 81 -KPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKE 139
KP+IWCGDLNV+H EID+ +P K + GFTI ER F L++
Sbjct: 244 TKPIIWCGDLNVAHTEIDLKNP---------------KTNKKSAGFTIEERTSFSNFLEK 288
Query: 140 GRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGI 199
G +D+YR + K+ F WS G+ + R+DYF+VS+ L D I +
Sbjct: 289 G-YVDSYRHFNPGKEGSYTF-WSYLGGGRSKNVGWRLDYFVVSKRLMDSIKISPFHRTSV 346
Query: 200 ELEGFYGSDHCPVSL 214
GSDHCP+ +
Sbjct: 347 -----MGSDHCPIGV 356
>gi|52141752|ref|YP_085078.1| exodeoxyribonuclease III [Bacillus cereus E33L]
gi|51975221|gb|AAU16771.1| exodeoxyribonuclease III [Bacillus cereus E33L]
Length = 252
Score = 110 bits (274), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 70/198 (35%), Positives = 108/198 (54%), Gaps = 30/198 (15%)
Query: 23 LSALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GK 81
L +++ +GRVI EFE FY++ Y PN K R KW+ + ++ + K
Sbjct: 81 LGIEEHDQEGRVITLEFEGFYIITLYTPNA--KRGLERLDYRMKWEDDFRAYIKRLDEKK 138
Query: 82 PLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGR 141
P+I+CGDLNV+H+EID+ +P K + PGF+ ER++F IL+EG
Sbjct: 139 PVIFCGDLNVAHKEIDLKNP---------------KSNRKNPGFSDEEREKFTCILEEG- 182
Query: 142 LIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRM--RIDYFIVSEELKDRIIACEMQGHGI 199
ID YR+L+ D + +SW +G R K + R+DYF+VSE +K++I ++ +
Sbjct: 183 FIDTYRYLY--PDQEGAYSWWSYRMGA-RAKNIGWRLDYFVVSERIKNQIKDAKINSEVM 239
Query: 200 ELEGFYGSDHCPVSLELS 217
GSDHCPV L ++
Sbjct: 240 ------GSDHCPVELHIN 251
>gi|299538266|ref|ZP_07051551.1| exodeoxyribonuclease [Lysinibacillus fusiformis ZC1]
gi|424736313|ref|ZP_18164773.1| exodeoxyribonuclease [Lysinibacillus fusiformis ZB2]
gi|298726468|gb|EFI67058.1| exodeoxyribonuclease [Lysinibacillus fusiformis ZC1]
gi|422949916|gb|EKU44289.1| exodeoxyribonuclease [Lysinibacillus fusiformis ZB2]
Length = 251
Score = 109 bits (273), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 66/190 (34%), Positives = 103/190 (54%), Gaps = 28/190 (14%)
Query: 29 EPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFV--LQCSGKPLIWC 86
+ +GR+I E++ FYL+N Y PN + + R +W+ R+ ++ L C KP+++C
Sbjct: 86 QDEGRIITLEYKNFYLVNVYTPNA--QRDLARLPLRLQWEDRLANYLQELNCQ-KPVVYC 142
Query: 87 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 146
GDLNV+H EID+ + K + G GFT ER +F A+L+ G +D++
Sbjct: 143 GDLNVAHTEIDLKNA---------------KSNIGNSGFTYEERAKFSALLESG-FVDSF 186
Query: 147 RFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYG 206
R+ H E + D WS + R RIDYF+VS +LK++I + + H G
Sbjct: 187 RYKHPE-ETDHYTWWSYMNKVRERNIGWRIDYFVVSNQLKEQIESATIHPH------IMG 239
Query: 207 SDHCPVSLEL 216
SDHCP+ L+L
Sbjct: 240 SDHCPIELQL 249
>gi|374604001|ref|ZP_09676972.1| exodeoxyribonuclease III [Paenibacillus dendritiformis C454]
gi|374390357|gb|EHQ61708.1| exodeoxyribonuclease III [Paenibacillus dendritiformis C454]
Length = 264
Score = 109 bits (273), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 71/204 (34%), Positives = 106/204 (51%), Gaps = 28/204 (13%)
Query: 29 EPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCG 87
EP+GR+I EFE+FYL+ Y PN K + + + R +W++R + ++ + KP+I CG
Sbjct: 86 EPEGRMITLEFESFYLVTVYTPNA--KRDLSRLEYRLEWEERFRRYLQELDARKPVIVCG 143
Query: 88 DLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYR 147
DLNV+H+E+D+ + K + G GFT ER + +L G D +R
Sbjct: 144 DLNVAHQEMDLKNA---------------KSNHGNSGFTPEERDKMTRLLDAG-FTDTFR 187
Query: 148 FLHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYG 206
H+ D ++ WS P + R RIDYF+VS LK+ I E+ G
Sbjct: 188 --HRYPDRTDAYTWWSFMPKVRERNIGWRIDYFLVSARLKEYIKDAEIDA------AITG 239
Query: 207 SDHCPVSLELSEASSDSEKREKKN 230
SDHCPV LE+ + +S KR + N
Sbjct: 240 SDHCPVILEMEDLPVESPKRGEHN 263
>gi|254479049|ref|ZP_05092404.1| exodeoxyribonuclease III [Carboxydibrachium pacificum DSM 12653]
gi|214035005|gb|EEB75724.1| exodeoxyribonuclease III [Carboxydibrachium pacificum DSM 12653]
Length = 258
Score = 109 bits (273), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 69/192 (35%), Positives = 105/192 (54%), Gaps = 26/192 (13%)
Query: 28 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWC 86
++ +GRVI E+E F+L+NTY PN+ + R +W++ + ++L+ S KP+I C
Sbjct: 88 HDKEGRVITLEYEKFFLVNTYTPNS--QRGLTRLDYRMQWEEDFRSYLLKLDSLKPVILC 145
Query: 87 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 146
GDLNV+H+EID+ +P AA + N GFT ER++ +L G ID +
Sbjct: 146 GDLNVAHQEIDIKNP---AANRRNA------------GFTDEEREKMTILLNSG-FIDTF 189
Query: 147 RFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYG 206
R+ + +K D WS + + R+DYFIVSE LKD +I ++ + G
Sbjct: 190 RYFYPDKK-DAYTWWSYMHNAREKNIGWRVDYFIVSERLKDYLIDSQIHSEVM------G 242
Query: 207 SDHCPVSLELSE 218
SDHCPV L + E
Sbjct: 243 SDHCPVVLIVKE 254
>gi|357614743|gb|EHJ69244.1| ap endonuclease [Danaus plexippus]
Length = 630
Score = 109 bits (273), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 77/222 (34%), Positives = 109/222 (49%), Gaps = 30/222 (13%)
Query: 5 ICLFYVCLCNNSSVFHFLLSALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRR 64
+ ++ L N + L + + +GR+I AE+E FYL+ TY PN G K S +R
Sbjct: 437 VGIYTTKLAMN---VQYGLQNEELDSEGRIITAEYEQFYLICTYVPNAGRKLV--SLPKR 491
Query: 65 RKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQP 123
KW+ +E V KP+I CGD+NV+H EID+++P K +
Sbjct: 492 LKWNDEFREHVKALDEKKPVIICGDMNVAHNEIDLTNP---------------KTNKKNA 536
Query: 124 GFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSE 183
GFT ER +L +G +D +R H EK +S+ N K G R+DYFIVSE
Sbjct: 537 GFTEEERAGMTELLGDG-FVDTFRHFHPEKVAYTFWSYMANSRAKNVG--WRLDYFIVSE 593
Query: 184 ELKDRIIACEMQGHGIELEGFYGSDHCPVSLELSEASSDSEK 225
L I ++G YGSDHCP++L L S+D K
Sbjct: 594 RLLPSICDSSIRGE------VYGSDHCPIALYLHLTSADKPK 629
>gi|373107112|ref|ZP_09521412.1| exodeoxyribonuclease III (xth) [Stomatobaculum longum]
gi|371652051|gb|EHO17477.1| exodeoxyribonuclease III (xth) [Stomatobaculum longum]
Length = 254
Score = 109 bits (273), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 74/195 (37%), Positives = 103/195 (52%), Gaps = 26/195 (13%)
Query: 23 LSALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGK 81
L +++ +GRVI EF +Y+L Y PN+ + E R +W+ ++ K
Sbjct: 83 LGIPEHDKEGRVITLEFPDYYVLTCYTPNS--QNELKRLDYRMEWEDAFFAYIKGLDQKK 140
Query: 82 PLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGR 141
PLI+CGDLNV+HEEID+ +P + + N GFT ER++ +L G
Sbjct: 141 PLIYCGDLNVAHEEIDLKNP---STNRRNA------------GFTDEEREKMTRVLTNG- 184
Query: 142 LIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIEL 201
+D++R+LH E + D WS + R RIDYFIVSE LKDRI QG I
Sbjct: 185 FVDSFRYLHPE-EKDAYSWWSYRMKARERNVGWRIDYFIVSERLKDRI-----QGASIHS 238
Query: 202 EGFYGSDHCPVSLEL 216
E GSDHCPV L++
Sbjct: 239 E-ILGSDHCPVELKI 252
>gi|304407353|ref|ZP_07389006.1| exodeoxyribonuclease III Xth [Paenibacillus curdlanolyticus YK9]
gi|304343794|gb|EFM09635.1| exodeoxyribonuclease III Xth [Paenibacillus curdlanolyticus YK9]
Length = 255
Score = 109 bits (273), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 70/192 (36%), Positives = 101/192 (52%), Gaps = 26/192 (13%)
Query: 29 EPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCG 87
E +GR++ EF+ FYL+N Y PN K + + R +W+ R + ++L+ KP+I CG
Sbjct: 86 EDEGRILTLEFDRFYLVNVYTPNA--KRDLSRLGYRLEWEDRFRAYLLELDAQKPVIVCG 143
Query: 88 DLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYR 147
DLNV+H+EID+ + K + G GFT ER + +L+ G ID +R
Sbjct: 144 DLNVAHQEIDLKNA---------------KSNHGNSGFTTEERGKMTDLLESG-FIDTFR 187
Query: 148 FLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGS 207
LH E+D D WS P + R RIDYF+ S L A + GI+ GS
Sbjct: 188 HLHPERD-DAFSWWSFMPKVRERNIGWRIDYFLASARL-----APHVTDAGID-SAILGS 240
Query: 208 DHCPVSLELSEA 219
DHCPV ++L +A
Sbjct: 241 DHCPVMVQLEDA 252
>gi|336396024|ref|ZP_08577423.1| exonuclease III [Lactobacillus farciminis KCTC 3681]
Length = 253
Score = 109 bits (273), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 68/192 (35%), Positives = 106/192 (55%), Gaps = 27/192 (14%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIW 85
+++ +GR I EF +YL+N+Y PN+ K + + R ++D ++E++LQ S KP+I
Sbjct: 84 EFDDEGRTITLEFPDYYLINSYTPNSQPKLKRVDY--RMRYDDVLREYMLQLSADKPVIL 141
Query: 86 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 145
CGDLNV+HEEID+ +P K + PGF+ ER +F +L G ID+
Sbjct: 142 CGDLNVAHEEIDLKNP---------------KTNHKNPGFSDQERDKFSELLDSG-FIDS 185
Query: 146 YRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 205
+R LH ++ +S+ N G RIDYF+VS+ + I ++ L Y
Sbjct: 186 FRSLHPQEIKYSWWSYRFNARKNNAG--WRIDYFVVSKNGQQLIQDADI------LTDIY 237
Query: 206 GSDHCPVSLELS 217
GSDHCP+ L+L+
Sbjct: 238 GSDHCPIELDLN 249
>gi|423452962|ref|ZP_17429815.1| exodeoxyribonuclease [Bacillus cereus BAG5X1-1]
gi|401139521|gb|EJQ47083.1| exodeoxyribonuclease [Bacillus cereus BAG5X1-1]
Length = 252
Score = 109 bits (272), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 69/197 (35%), Positives = 106/197 (53%), Gaps = 30/197 (15%)
Query: 23 LSALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GK 81
L +++ +GRVI EFE FY++ Y PN+ K R +W+ + ++ + K
Sbjct: 81 LGIEEHDQEGRVITLEFEDFYIITLYTPNS--KRGLERLDYRMEWEDDFRAYIKRLDEKK 138
Query: 82 PLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGR 141
P+I+CGDLNV+H+EID+ +P K + PGF+ ER++F IL+EG
Sbjct: 139 PVIFCGDLNVAHKEIDLKNP---------------KSNRKNPGFSDEEREKFTNILEEG- 182
Query: 142 LIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRM--RIDYFIVSEELKDRIIACEMQGHGI 199
+D YRFL+ D + +SW +G R K + R+DYF+ SE LK +I ++ +
Sbjct: 183 FVDTYRFLY--PDQEGAYSWWSYRMGA-RAKNIGWRLDYFVTSERLKHKITDAKINSEVM 239
Query: 200 ELEGFYGSDHCPVSLEL 216
GSDHCPV L +
Sbjct: 240 ------GSDHCPVELHI 250
>gi|423469951|ref|ZP_17446695.1| exodeoxyribonuclease [Bacillus cereus BAG6O-2]
gi|423558712|ref|ZP_17535014.1| exodeoxyribonuclease [Bacillus cereus MC67]
gi|401190966|gb|EJQ98002.1| exodeoxyribonuclease [Bacillus cereus MC67]
gi|402437203|gb|EJV69227.1| exodeoxyribonuclease [Bacillus cereus BAG6O-2]
Length = 252
Score = 109 bits (272), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 69/197 (35%), Positives = 106/197 (53%), Gaps = 30/197 (15%)
Query: 23 LSALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GK 81
L +++ +GRVI EFE FY++ Y PN+ K R +W+ + ++ + K
Sbjct: 81 LGIEEHDQEGRVITLEFEDFYIITLYTPNS--KRGLERLDYRMEWEDDFRAYIKRLDEKK 138
Query: 82 PLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGR 141
P+I+CGDLNV+H+EID+ +P K + PGF+ ER++F IL+EG
Sbjct: 139 PVIFCGDLNVAHKEIDLKNP---------------KSNRKNPGFSDEEREKFTNILEEG- 182
Query: 142 LIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRM--RIDYFIVSEELKDRIIACEMQGHGI 199
+D YRFL+ D + +SW +G R K + R+DYF+ SE LK +I ++ +
Sbjct: 183 FVDTYRFLY--PDQEGAYSWWSYRMGA-RAKNIGWRLDYFVTSERLKHKITDAKINSEVM 239
Query: 200 ELEGFYGSDHCPVSLEL 216
GSDHCPV L +
Sbjct: 240 ------GSDHCPVELHI 250
>gi|288556715|ref|YP_003428650.1| exodeoxyribonuclease [Bacillus pseudofirmus OF4]
gi|288547875|gb|ADC51758.1| exodeoxyribonuclease [Bacillus pseudofirmus OF4]
Length = 251
Score = 109 bits (272), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 66/192 (34%), Positives = 105/192 (54%), Gaps = 26/192 (13%)
Query: 26 LKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLI 84
L+ E +GR+I EF++FYL+N Y N K + + R +W+ ++E++L KP++
Sbjct: 83 LESEDEGRIITLEFDSFYLVNVYTINA--KRDLSRLPERLEWEDALKEYLLDLDRHKPVV 140
Query: 85 WCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLID 144
+CGDLNV+H E+D+ + + + G GFT+ ER + +L+ G ID
Sbjct: 141 YCGDLNVAHAEVDLKNA---------------RSNHGNSGFTLEERGKMTTLLESG-FID 184
Query: 145 AYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGF 204
++R+L+ E+ D WS + R RIDYFIVS +LK++I + +
Sbjct: 185 SFRYLYPER-TDAFTWWSYMRDVRARNIGWRIDYFIVSTQLKEKINEASIYAEVL----- 238
Query: 205 YGSDHCPVSLEL 216
GSDHCP+ LEL
Sbjct: 239 -GSDHCPIGLEL 249
>gi|116873216|ref|YP_849997.1| exodeoxyribonuclease III [Listeria welshimeri serovar 6b str.
SLCC5334]
gi|116742094|emb|CAK21218.1| exodeoxyribonuclease III [Listeria welshimeri serovar 6b str.
SLCC5334]
Length = 251
Score = 109 bits (272), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 66/193 (34%), Positives = 103/193 (53%), Gaps = 28/193 (14%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIW 85
+++ +GRVI EFE F+++ Y PN+ + E R ++ I E++ KP++
Sbjct: 84 EHDTEGRVITLEFEAFFMVTVYTPNS--QAELKRLDYRMTFEDAILEYIKNLDKTKPVVL 141
Query: 86 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 145
CGDLNV+HEEID+ +P K + GF+ ER +F A L G ID+
Sbjct: 142 CGDLNVAHEEIDLKNP---------------KTNRKNAGFSDEERAKFSAFLDAG-FIDS 185
Query: 146 YRFLHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGF 204
+R+ + D+ +S WS + R RIDYF+VS+ LKD+++ ++ +
Sbjct: 186 FRYFY--PDLTDAYSWWSYRMNARARNTGWRIDYFVVSKRLKDKLVDAKIHSEVL----- 238
Query: 205 YGSDHCPVSLELS 217
GSDHCPV LEL+
Sbjct: 239 -GSDHCPVELELN 250
>gi|423488860|ref|ZP_17465542.1| exodeoxyribonuclease [Bacillus cereus BtB2-4]
gi|423494585|ref|ZP_17471229.1| exodeoxyribonuclease [Bacillus cereus CER057]
gi|423498625|ref|ZP_17475242.1| exodeoxyribonuclease [Bacillus cereus CER074]
gi|401151646|gb|EJQ59092.1| exodeoxyribonuclease [Bacillus cereus CER057]
gi|401159283|gb|EJQ66668.1| exodeoxyribonuclease [Bacillus cereus CER074]
gi|402433215|gb|EJV65269.1| exodeoxyribonuclease [Bacillus cereus BtB2-4]
Length = 252
Score = 109 bits (272), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 67/198 (33%), Positives = 107/198 (54%), Gaps = 30/198 (15%)
Query: 23 LSALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GK 81
L +++ +GRVI EFE FY++ Y PN+ K R KW+ + ++ + + K
Sbjct: 81 LGIEEHDQEGRVITLEFEDFYMITLYTPNS--KRGLERLDYRMKWEDDFRAYIKRLNEKK 138
Query: 82 PLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGR 141
+++CGDLNV+H+EID+ +P K + PGF+ ER++F L+EG
Sbjct: 139 SVVFCGDLNVAHKEIDLKNP---------------KSNRKNPGFSDEEREKFTRTLEEG- 182
Query: 142 LIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRM--RIDYFIVSEELKDRIIACEMQGHGI 199
+D YR+L+ D + +SW +G R K + R+DYF+VSE +KD+I ++
Sbjct: 183 FVDTYRYLY--PDQEGAYSWWSYRMGA-RAKNIGWRLDYFVVSERMKDKITEAKINSE-- 237
Query: 200 ELEGFYGSDHCPVSLELS 217
GSDHCPV L ++
Sbjct: 238 ----IMGSDHCPVELHIN 251
>gi|163941424|ref|YP_001646308.1| exodeoxyribonuclease III Xth [Bacillus weihenstephanensis KBAB4]
gi|229012920|ref|ZP_04170085.1| Exodeoxyribonuclease [Bacillus mycoides DSM 2048]
gi|423661424|ref|ZP_17636593.1| exodeoxyribonuclease [Bacillus cereus VDM022]
gi|163863621|gb|ABY44680.1| exodeoxyribonuclease III Xth [Bacillus weihenstephanensis KBAB4]
gi|228748174|gb|EEL98034.1| Exodeoxyribonuclease [Bacillus mycoides DSM 2048]
gi|401301465|gb|EJS07054.1| exodeoxyribonuclease [Bacillus cereus VDM022]
Length = 252
Score = 108 bits (271), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 67/198 (33%), Positives = 107/198 (54%), Gaps = 30/198 (15%)
Query: 23 LSALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GK 81
L +++ +GRVI EFE FY++ Y PN+ K R KW+ + ++ + + K
Sbjct: 81 LGIEEHDQEGRVITLEFEDFYMITLYTPNS--KRGLERLDYRMKWEDDFRAYIKRLNEKK 138
Query: 82 PLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGR 141
+++CGDLNV+H+EID+ +P K + PGF+ ER++F L+EG
Sbjct: 139 SVVFCGDLNVAHKEIDLKNP---------------KSNRKNPGFSDEEREKFTRTLEEG- 182
Query: 142 LIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRM--RIDYFIVSEELKDRIIACEMQGHGI 199
+D YR+L+ D + +SW +G R K + R+DYF+VSE +KD+I ++
Sbjct: 183 FVDTYRYLY--PDQEGAYSWWSYRMGA-RAKNIGWRLDYFVVSERMKDKITEAKINSE-- 237
Query: 200 ELEGFYGSDHCPVSLELS 217
GSDHCPV L ++
Sbjct: 238 ----IMGSDHCPVELHIN 251
>gi|291522762|emb|CBK81055.1| exodeoxyribonuclease III [Coprococcus catus GD/7]
Length = 258
Score = 108 bits (271), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 66/197 (33%), Positives = 104/197 (52%), Gaps = 26/197 (13%)
Query: 23 LSALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGK 81
+ +++ +GRVI E+++FYL+N Y PN+ K+ R KW+ + ++ K
Sbjct: 87 MDIAEHDTEGRVITLEYDSFYLVNVYTPNS--KDGLARLPYRMKWEDDFRNYLKTLEQTK 144
Query: 82 PLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGR 141
P++ CGDLNV+HEEID+ +P K + GF+ ER + +L G
Sbjct: 145 PVVMCGDLNVAHEEIDLKNP---------------KTNRKNAGFSDEERAKMTELLAAG- 188
Query: 142 LIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIEL 201
ID +R+ + +K + + WS + RIDYFIVS+ LK+R+I+ +
Sbjct: 189 FIDTFRYFYPDKTGEYSW-WSYRFNARKNNAGWRIDYFIVSDALKERLISASIH------ 241
Query: 202 EGFYGSDHCPVSLELSE 218
+ +GSDHCPV LEL E
Sbjct: 242 QEIFGSDHCPVELELKE 258
>gi|229162671|ref|ZP_04290628.1| Exodeoxyribonuclease [Bacillus cereus R309803]
gi|228620553|gb|EEK77422.1| Exodeoxyribonuclease [Bacillus cereus R309803]
Length = 252
Score = 108 bits (271), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 68/198 (34%), Positives = 108/198 (54%), Gaps = 30/198 (15%)
Query: 23 LSALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GK 81
L +++ +GRVI EFE F+++ Y PN+ K R KW+ + ++ + K
Sbjct: 81 LGIEEHDQEGRVITLEFEDFHMITLYTPNS--KRGLERLDYRMKWEDDFRAYIKRLDEKK 138
Query: 82 PLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGR 141
P+I+CGDLNV+H+EID+ +P K + PGF+ ER++F +L+EG
Sbjct: 139 PVIFCGDLNVAHKEIDLKNP---------------KSNRKNPGFSDEEREKFTCVLEEG- 182
Query: 142 LIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRM--RIDYFIVSEELKDRIIACEMQGHGI 199
ID YR+L+ D +SW +G R K + R+DYF+VSE +K++I ++ +
Sbjct: 183 FIDTYRYLY--PDQKGAYSWWSYRMGA-RAKNIGWRLDYFVVSERMKNQITEAKINSEVM 239
Query: 200 ELEGFYGSDHCPVSLELS 217
GSDHCPV L ++
Sbjct: 240 ------GSDHCPVELHVN 251
>gi|145351399|ref|XP_001420068.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144580301|gb|ABO98361.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 371
Score = 108 bits (271), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 74/230 (32%), Positives = 107/230 (46%), Gaps = 36/230 (15%)
Query: 4 FICLFYVCLCNNSSVFHFL-LSALKYEPD------GRVILAEFETFYLLNTYAPNNGWKE 56
I + CL V L L PD GRV++ E+E +LNTY P+NG
Sbjct: 121 VITMVKKCLAKPIRVARTLALDGRDVTPDEIDTNEGRVLMLEYEKMIVLNTYVPHNGSNA 180
Query: 57 EENSFQRRRKWDKRIQEFVLQCSGKP-LIWCGDLNVSHEEIDVS-HPEFFAAAKLNGYVP 114
E +++R WD R+Q F+ GK ++W GDLNV+H++ DV P F
Sbjct: 181 ER--YEKRALWDFRVQRFLENYRGKKDVVWMGDLNVAHQDHDVGPSPRLFE--------- 229
Query: 115 PNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRM 174
G GFT+ ER+RF IL ++D YR + ++ S G + ++G M
Sbjct: 230 ------GVGGFTLPERRRFTDILAATDMVDTYRAFNGDRLTYTWRSTRGQGLDGWQG--M 281
Query: 175 RIDYFIVSEELKDRIIACEMQ--------GHGIELEGFYGSDHCPVSLEL 216
R+DYF+V +L RI +CE + + F SDHC + L L
Sbjct: 282 RLDYFVVPRKLVARIKSCETSTDRFDDTTAQSMPMSCFMDSDHCMIHLSL 331
>gi|379720396|ref|YP_005312527.1| ExoA protein [Paenibacillus mucilaginosus 3016]
gi|386722997|ref|YP_006189323.1| exodeoxyribonuclease III [Paenibacillus mucilaginosus K02]
gi|378569068|gb|AFC29378.1| ExoA [Paenibacillus mucilaginosus 3016]
gi|384090122|gb|AFH61558.1| exodeoxyribonuclease III [Paenibacillus mucilaginosus K02]
Length = 259
Score = 108 bits (271), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 67/192 (34%), Positives = 96/192 (50%), Gaps = 26/192 (13%)
Query: 29 EPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCG 87
EP+GR+I EF+ FYL+ Y PN K + + R +W+ R + ++ KP+I CG
Sbjct: 85 EPEGRIITLEFDGFYLVTVYTPNA--KRDLSRLDYRLEWEDRFRRYIAGLDAVKPVILCG 142
Query: 88 DLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYR 147
DLNV+HEEID+ + K + G GFT ER++ +L G ID +R
Sbjct: 143 DLNVAHEEIDLKNA---------------KGNRGNSGFTAEERQKMTDLLGAG-FIDTFR 186
Query: 148 FLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGS 207
+ E+ D WS P + R RIDYF+ S L + ++ H + GS
Sbjct: 187 HFYPEQ-TDAYTWWSNMPKVRERNVGWRIDYFLASARLAPSLQDAQIHAHVL------GS 239
Query: 208 DHCPVSLELSEA 219
DHCPV L L+E
Sbjct: 240 DHCPVVLTLAEV 251
>gi|373471031|ref|ZP_09562109.1| exodeoxyribonuclease III [Lachnospiraceae bacterium oral taxon 082
str. F0431]
gi|371761191|gb|EHO49827.1| exodeoxyribonuclease III [Lachnospiraceae bacterium oral taxon 082
str. F0431]
Length = 259
Score = 108 bits (271), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 68/193 (35%), Positives = 105/193 (54%), Gaps = 30/193 (15%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIW 85
+++ +GRVI AE+E FY++ Y PN+ + + R W+ +++L+ KP+I+
Sbjct: 92 EHDNEGRVITAEYEDFYMITCYTPNS--QRGLTRLEYRMTWEDAFLKYILELEKNKPVIF 149
Query: 86 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 145
CGDLNV+H EID+ +P K + GFT ER + IL G +D+
Sbjct: 150 CGDLNVAHTEIDLKNP---------------KTNRKNAGFTDEERAKMDVILSSG-FVDS 193
Query: 146 YRFLHKEKDMDCGFSWSGNPIGKYRGKRM--RIDYFIVSEELKDRIIACEMQGHGIELEG 203
+R L+ +K +SW + +G R K + RIDYFIVS +LKDRI ++
Sbjct: 194 FRVLYPDK--TDAYSW-WSYMGGARAKNVGWRIDYFIVSAKLKDRIKEAKIHSE------ 244
Query: 204 FYGSDHCPVSLEL 216
+GSDHCPV L++
Sbjct: 245 IFGSDHCPVELDI 257
>gi|320163204|gb|EFW40103.1| APEX nuclease [Capsaspora owczarzaki ATCC 30864]
Length = 429
Score = 108 bits (271), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 67/198 (33%), Positives = 101/198 (51%), Gaps = 27/198 (13%)
Query: 21 FLLSALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG 80
F L+ +++ +GRVI AEF FYL+ Y PN+G K E + R+ WD + ++L
Sbjct: 257 FGLNVPEHDTEGRVITAEFADFYLVTAYVPNSGQKLE--TLPYRQTWDVAFRTYLLSLDA 314
Query: 81 -KPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKE 139
KP++ CGDLNV+H EID+ +P K + GFT ER+ F IL
Sbjct: 315 KKPVVLCGDLNVAHNEIDLKNP---------------KTNKRSAGFTPQEREGFTTILGT 359
Query: 140 GRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGI 199
+D++R L+ E+ +S+ N G R+DYF+VS+ + +++
Sbjct: 360 -EFVDSFRVLYPEESAYSFWSYRHNSRALNVG--WRLDYFVVSQRFMQSVADSQIRSQ-- 414
Query: 200 ELEGFYGSDHCPVSLELS 217
YGSDHCP+ L LS
Sbjct: 415 ----VYGSDHCPIVLHLS 428
>gi|423598952|ref|ZP_17574952.1| exodeoxyribonuclease [Bacillus cereus VD078]
gi|401237222|gb|EJR43679.1| exodeoxyribonuclease [Bacillus cereus VD078]
Length = 252
Score = 108 bits (270), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 67/198 (33%), Positives = 107/198 (54%), Gaps = 30/198 (15%)
Query: 23 LSALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GK 81
L +++ +GRVI EFE FY++ Y PN+ K R KW+ + ++ + + K
Sbjct: 81 LGIEEHDQEGRVITLEFEDFYMITLYTPNS--KRGLERLDYRMKWEDDFRAYIKRLNEKK 138
Query: 82 PLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGR 141
+++CGDLNV+H+EID+ +P K + PGF+ ER++F L+EG
Sbjct: 139 SVVFCGDLNVAHKEIDLKNP---------------KSNRKNPGFSDEEREQFTRTLEEG- 182
Query: 142 LIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRM--RIDYFIVSEELKDRIIACEMQGHGI 199
+D YR+L+ D + +SW +G R K + R+DYF+VSE +KD+I ++
Sbjct: 183 FVDTYRYLY--PDQEGAYSWWSYRMGA-RAKNIGWRLDYFVVSERMKDKITEAKINSE-- 237
Query: 200 ELEGFYGSDHCPVSLELS 217
GSDHCPV L ++
Sbjct: 238 ----IMGSDHCPVELHIN 251
>gi|325182155|emb|CCA16608.1| exodeoxyribonuclease putative [Albugo laibachii Nc14]
Length = 375
Score = 108 bits (270), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 74/191 (38%), Positives = 100/191 (52%), Gaps = 29/191 (15%)
Query: 31 DGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC----SGKPLIWC 86
+GR + EFE F+L++TY PN G K E R +WD + + LQ S K +IWC
Sbjct: 209 EGRFLALEFEKFWLVHTYVPNAGMKLERLG-DRTTQWDAVLLQ-TLQSLEKESEKGVIWC 266
Query: 87 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 146
GDLNV+H++ID+ P+ N + PGFT AER FG LK G +D +
Sbjct: 267 GDLNVAHQDIDIHDPK-------------NNRN-KSPGFTDAERNNFGETLKTG-FVDTF 311
Query: 147 RFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYG 206
R H EK +S+ N + R K R+DYF+VSE L ++ A ++ EG G
Sbjct: 312 RHFHPEKQQFTYWSYRFN--ARTRNKGWRLDYFVVSERLMAQVKASFVR------EGVKG 363
Query: 207 SDHCPVSLELS 217
SDH PV LS
Sbjct: 364 SDHVPVGAILS 374
>gi|403378650|ref|ZP_10920707.1| exodeoxyribonuclease [Paenibacillus sp. JC66]
Length = 256
Score = 108 bits (270), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 66/189 (34%), Positives = 102/189 (53%), Gaps = 26/189 (13%)
Query: 29 EPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCG 87
E +GR++ EF +FYL+N Y PN K + + R +W+ R +++++Q KP+I CG
Sbjct: 87 EAEGRILTLEFASFYLVNVYTPNA--KRDLSRLPYRLEWEDRFRKYIVQLDEKKPVIICG 144
Query: 88 DLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYR 147
DLNV+H+EID+ + K + G GFT ER +F +L G +D++R
Sbjct: 145 DLNVAHQEIDIKNA---------------KSNVGNSGFTHEERGKFNELLGAG-FLDSFR 188
Query: 148 FLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGS 207
L+ ++ D WS P + R RIDYF++SE+L+ + + H GS
Sbjct: 189 ELYPDR-TDAYTWWSFMPKVRERNIGWRIDYFLISEKLRPHLKEAGIDSH------IMGS 241
Query: 208 DHCPVSLEL 216
DHCPV +EL
Sbjct: 242 DHCPVYVEL 250
>gi|423616001|ref|ZP_17591835.1| exodeoxyribonuclease [Bacillus cereus VD115]
gi|401260538|gb|EJR66711.1| exodeoxyribonuclease [Bacillus cereus VD115]
Length = 252
Score = 108 bits (270), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 69/198 (34%), Positives = 107/198 (54%), Gaps = 30/198 (15%)
Query: 23 LSALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GK 81
L +++ +GRVI EFE FY++ Y PN+ K R +W+ + ++ Q K
Sbjct: 81 LGIEEHDQEGRVITLEFEDFYMITLYTPNS--KRGLERLDYRMEWEDDFRAYIKQLDEKK 138
Query: 82 PLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGR 141
P+I+CGDLNV+H+EID+ +P K + PGF+ ER++F IL+EG
Sbjct: 139 PVIFCGDLNVAHKEIDLKNP---------------KSNRKNPGFSDEEREKFTRILEEG- 182
Query: 142 LIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRM--RIDYFIVSEELKDRIIACEMQGHGI 199
+D YR L+ D + +SW +G R K + R+DYF+VS+ +K +I ++ I
Sbjct: 183 FVDTYRHLY--PDQEGAYSWWSYRMGA-RAKNIGWRLDYFVVSDRIKGQITDAKINSEII 239
Query: 200 ELEGFYGSDHCPVSLELS 217
GSDHCPV L ++
Sbjct: 240 ------GSDHCPVELHIN 251
>gi|218291327|ref|ZP_03495287.1| exodeoxyribonuclease III Xth [Alicyclobacillus acidocaldarius LAA1]
gi|218238773|gb|EED05987.1| exodeoxyribonuclease III Xth [Alicyclobacillus acidocaldarius LAA1]
Length = 174
Score = 108 bits (270), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 67/191 (35%), Positives = 99/191 (51%), Gaps = 26/191 (13%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIW 85
+++P+GR+I EF +FY++ Y PN K + + R +W+ + ++ KP+I
Sbjct: 7 RHDPEGRIITLEFPSFYVVTVYTPNA--KRDLSRLPYRLEWEDAFRAYLCALDREKPVIA 64
Query: 86 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 145
CGDLNV+HEEID+ + K + G GFT ER + +L G +D
Sbjct: 65 CGDLNVAHEEIDIKNA---------------KSNRGNSGFTDEERAKMTELLDAG-FVDT 108
Query: 146 YRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 205
+R L+ D WS P + R RIDYF+VSE L+DRI+ + H +
Sbjct: 109 FRALYPNV-TDKYTWWSNMPGVRERNIGWRIDYFLVSERLRDRILEARIDDHVL------ 161
Query: 206 GSDHCPVSLEL 216
GSDHCPV LE+
Sbjct: 162 GSDHCPVVLEV 172
>gi|315303668|ref|ZP_07874193.1| exodeoxyribonuclease III [Listeria ivanovii FSL F6-596]
gi|313627958|gb|EFR96566.1| exodeoxyribonuclease III [Listeria ivanovii FSL F6-596]
Length = 251
Score = 108 bits (269), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 67/193 (34%), Positives = 104/193 (53%), Gaps = 28/193 (14%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIW 85
+++ +GRVI EFE F+++ Y PN+ + E R ++ I +V + KP+I
Sbjct: 84 EHDTEGRVITLEFENFFMVTVYTPNS--QAELKRLDYRMTFEDAILAYVKKLDETKPVIL 141
Query: 86 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 145
CGDLNV+HEEID+ +P K + GF+ ER +F A L+ G +D+
Sbjct: 142 CGDLNVAHEEIDLKNP---------------KTNRKNAGFSDEERAKFTAFLEAG-FVDS 185
Query: 146 YRFLHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGF 204
+R+ + D++ +S WS + R RIDYF+VSE LKD ++ ++ +
Sbjct: 186 FRYFY--PDLEDAYSWWSYRMNARARNTGWRIDYFVVSERLKDNLVDAKIHPDVL----- 238
Query: 205 YGSDHCPVSLELS 217
GSDHCPV LEL+
Sbjct: 239 -GSDHCPVELELN 250
>gi|402574713|ref|YP_006624056.1| exodeoxyribonuclease III [Desulfosporosinus meridiei DSM 13257]
gi|402255910|gb|AFQ46185.1| exodeoxyribonuclease III [Desulfosporosinus meridiei DSM 13257]
Length = 251
Score = 108 bits (269), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 69/193 (35%), Positives = 103/193 (53%), Gaps = 26/193 (13%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIW 85
+++ +GRVI EFE Y++ Y PN+ + + R KW++ +F+ KP+I+
Sbjct: 84 EHDKEGRVITLEFEKHYVVTVYTPNS--QRGLARLEYRMKWEEEFLKFIKDLEKNKPVIF 141
Query: 86 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 145
CGDLNV+HEEID+ +P N+++ GF++ ER +FG I+K G ID
Sbjct: 142 CGDLNVAHEEIDLKNP------------SSNRKN---AGFSMEERNKFGEIIKSG-FIDT 185
Query: 146 YRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 205
+R+ + +K + WS + RIDYF VSE LKDR+ A +
Sbjct: 186 FRYFYPDK-TNAYTWWSYMFNARVNNAGWRIDYFCVSEILKDRLKA------AVIYNDVM 238
Query: 206 GSDHCPVSLELSE 218
GSDHCPV LE+ E
Sbjct: 239 GSDHCPVGLEMEE 251
>gi|299821801|ref|ZP_07053689.1| exodeoxyribonuclease III [Listeria grayi DSM 20601]
gi|299817466|gb|EFI84702.1| exodeoxyribonuclease III [Listeria grayi DSM 20601]
Length = 254
Score = 108 bits (269), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 64/188 (34%), Positives = 96/188 (51%), Gaps = 26/188 (13%)
Query: 31 DGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGDL 89
+GRVI EF FY + Y PN+ + E R +W++ + ++ KP+++CGDL
Sbjct: 89 EGRVITLEFPAFYFVTVYTPNS--QAELKRLDYRTEWEQAFADHIIALDKQKPVVFCGDL 146
Query: 90 NVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFL 149
NV+H+EID+ +P K + PGF+ ER FG +L G +D +R+L
Sbjct: 147 NVAHQEIDLKNP---------------KTNRKNPGFSDQERAMFGQLLDNG-FVDTFRYL 190
Query: 150 HKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDH 209
+ E++ D WS + R RIDYF+VS L D I + + GSDH
Sbjct: 191 YPEQE-DAYSWWSYRMNARSRNVGWRIDYFVVSSRLSDSIQEARIHAEVL------GSDH 243
Query: 210 CPVSLELS 217
CPV LE++
Sbjct: 244 CPVELEIA 251
>gi|297618884|ref|YP_003706989.1| exodeoxyribonuclease III Xth [Methanococcus voltae A3]
gi|297377861|gb|ADI36016.1| exodeoxyribonuclease III Xth [Methanococcus voltae A3]
Length = 249
Score = 108 bits (269), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 67/189 (35%), Positives = 97/189 (51%), Gaps = 27/189 (14%)
Query: 29 EPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCG 87
+ +GRVI AE++ +YL+N Y PN+ + R KWD + E++L + KPLI+CG
Sbjct: 85 DEEGRVITAEYDNYYLVNVYTPNS--QRGLTRLDYRMKWDTKFLEYLLSLNESKPLIFCG 142
Query: 88 DLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYR 147
DLNV+H+EID+ +P K + GFT ER F + E +D +R
Sbjct: 143 DLNVAHKEIDLKNP---------------KTNKKHAGFTEEERMGFDKYV-ENNFVDTFR 186
Query: 148 FLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGS 207
+KE D +S+ N K G RIDYF S + + + + L+ YGS
Sbjct: 187 LFNKESDNYTWWSYMHNARAKNIG--WRIDYFCTSNSIVNYV------KKSVILDKIYGS 238
Query: 208 DHCPVSLEL 216
DHCP+ LEL
Sbjct: 239 DHCPIKLEL 247
>gi|429735837|ref|ZP_19269760.1| exodeoxyribonuclease III [Selenomonas sp. oral taxon 138 str.
F0429]
gi|429156761|gb|EKX99382.1| exodeoxyribonuclease III [Selenomonas sp. oral taxon 138 str.
F0429]
Length = 250
Score = 107 bits (268), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 71/195 (36%), Positives = 101/195 (51%), Gaps = 34/195 (17%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQR---RRKWDKRIQEFVLQC-SGKP 82
+++ +GRVI EFE YL+ Y PN+ +N R R W+ + F+L + KP
Sbjct: 84 EHDNEGRVITMEFEDVYLVTVYTPNS-----KNGLLRLDYRMVWEDAFRAFLLDLRAKKP 138
Query: 83 LIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRL 142
++ CGDLNV+H EID+ +P K + GFT ER +F +L G
Sbjct: 139 VVVCGDLNVAHTEIDLKNP---------------KSNRRNAGFTDEERGKFTELLAAG-F 182
Query: 143 IDAYRFLHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIEL 201
+D +R L+ D+ ++ WS + RIDYF+VSEEL+DRI A E+
Sbjct: 183 VDTFRALY--PDLTGAYTWWSYLRHARETNAGWRIDYFLVSEELRDRIAAAEIHAD---- 236
Query: 202 EGFYGSDHCPVSLEL 216
+GSDHCPVSL L
Sbjct: 237 --VFGSDHCPVSLTL 249
>gi|401564907|ref|ZP_10805765.1| exodeoxyribonuclease III [Selenomonas sp. FOBRC6]
gi|400188269|gb|EJO22440.1| exodeoxyribonuclease III [Selenomonas sp. FOBRC6]
Length = 250
Score = 107 bits (268), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 71/195 (36%), Positives = 101/195 (51%), Gaps = 34/195 (17%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQR---RRKWDKRIQEFVLQC-SGKP 82
+++ +GRVI EFE YL+ Y PN+ +N R R W+ + F+L + KP
Sbjct: 84 EHDNEGRVITMEFEDVYLVTVYTPNS-----KNGLLRLDYRMVWEDAFRAFLLDLRAKKP 138
Query: 83 LIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRL 142
++ CGDLNV+H EID+ +P K + GFT ER +F +L G
Sbjct: 139 VVVCGDLNVAHTEIDLKNP---------------KSNRRNAGFTDEERGKFTELLAAG-F 182
Query: 143 IDAYRFLHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIEL 201
+D +R L+ D+ ++ WS + RIDYF+VSEEL+DRI A E+
Sbjct: 183 VDTFRALY--PDLTGAYTWWSYLRHARETNAGWRIDYFLVSEELRDRIAAAEIHAD---- 236
Query: 202 EGFYGSDHCPVSLEL 216
+GSDHCPVSL L
Sbjct: 237 --IFGSDHCPVSLTL 249
>gi|376263099|ref|YP_005149819.1| exodeoxyribonuclease III [Clostridium sp. BNL1100]
gi|373947093|gb|AEY68014.1| exodeoxyribonuclease III [Clostridium sp. BNL1100]
Length = 253
Score = 107 bits (268), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 69/191 (36%), Positives = 104/191 (54%), Gaps = 26/191 (13%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIW 85
+++ +GRVI EFE ++L+N Y PN+ K E + R KW+ + ++ Q KP+I
Sbjct: 85 EHDNEGRVITLEFEEYFLVNVYTPNS--KRELERLEYRMKWEDDFRVYLKQLEQTKPVII 142
Query: 86 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 145
CGD+NV+H+EID+ +P NK GFT+ ER++F +L++G +D
Sbjct: 143 CGDMNVAHQEIDIKNPR------------SNKR---SAGFTMEEREKFSELLEQG-FVDT 186
Query: 146 YRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 205
+R L+ +K + WS + + RIDYF +SE LKDRI A E+
Sbjct: 187 FRTLYPDKTGAYTW-WSYMFKAREKNVGWRIDYFCISEALKDRIEAAEIYCD------IM 239
Query: 206 GSDHCPVSLEL 216
GSDHCPV L +
Sbjct: 240 GSDHCPVGLTI 250
>gi|326790354|ref|YP_004308175.1| exodeoxyribonuclease III [Clostridium lentocellum DSM 5427]
gi|326541118|gb|ADZ82977.1| exodeoxyribonuclease III [Clostridium lentocellum DSM 5427]
Length = 251
Score = 107 bits (268), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 69/197 (35%), Positives = 106/197 (53%), Gaps = 28/197 (14%)
Query: 23 LSALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GK 81
L +++ +GRVI AEFE Y++ Y PN + E R W+ + ++ + K
Sbjct: 80 LGIAEHDTEGRVITAEFEEAYVVTVYTPNA--QNELARIDYRMAWEDAFKAYLKKLEENK 137
Query: 82 PLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGR 141
P+I CGDLNV+H+EID+ +P K + G GF+ ER +FG +L+ G
Sbjct: 138 PVIICGDLNVAHQEIDLKNP---------------KTNRGNAGFSDEERGKFGELLEAG- 181
Query: 142 LIDAYRFLHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIE 200
ID +R+ + D++ +S WS + + RIDYF+ SE LKD+++ G I+
Sbjct: 182 FIDTFRYFY--PDLEGAYSWWSYRFKAREKNTGWRIDYFLASEVLKDKLV-----GAAID 234
Query: 201 LEGFYGSDHCPVSLELS 217
E GSDHCPV LE++
Sbjct: 235 AE-ILGSDHCPVILEIN 250
>gi|228909564|ref|ZP_04073387.1| Exodeoxyribonuclease [Bacillus thuringiensis IBL 200]
gi|228849853|gb|EEM94684.1| Exodeoxyribonuclease [Bacillus thuringiensis IBL 200]
Length = 244
Score = 107 bits (268), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 67/198 (33%), Positives = 108/198 (54%), Gaps = 30/198 (15%)
Query: 23 LSALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GK 81
L +++ +GR+I EFE FY++ Y PN+ K R KW+ + ++ + K
Sbjct: 73 LGIEEHDQEGRLITLEFEDFYMITLYTPNS--KRGLERLDYRMKWEDDFRSYIKRLDEKK 130
Query: 82 PLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGR 141
+I+CGDLNV+H+EID+ +P K + PGF+ ER++F IL+EG
Sbjct: 131 TVIFCGDLNVAHKEIDLKNP---------------KSNRKNPGFSDEEREKFTCILEEG- 174
Query: 142 LIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRM--RIDYFIVSEELKDRIIACEMQGHGI 199
+D YR+L+ + + +SW +G R K + R+DYF+VSE +KD+I ++ +
Sbjct: 175 FVDTYRYLY--PNQEGAYSWWSYRMGA-RAKNIGWRLDYFVVSERMKDQITEVKINSEVM 231
Query: 200 ELEGFYGSDHCPVSLELS 217
GSDHCPV L ++
Sbjct: 232 ------GSDHCPVELYIN 243
>gi|423611960|ref|ZP_17587821.1| exodeoxyribonuclease III (xth) [Bacillus cereus VD107]
gi|401246967|gb|EJR53311.1| exodeoxyribonuclease III (xth) [Bacillus cereus VD107]
Length = 252
Score = 107 bits (268), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 67/197 (34%), Positives = 107/197 (54%), Gaps = 30/197 (15%)
Query: 23 LSALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GK 81
L +++ +GRVI EF+ FY++ Y PN+ K R +W+ + ++ + K
Sbjct: 81 LGIEEHDQEGRVITLEFDDFYMITLYTPNS--KRGLERLDYRMEWEDDFRAYIKRLDEKK 138
Query: 82 PLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGR 141
P+I+CGDLNV+H+EID+ +P K + PGF+ ER++F +L+EG
Sbjct: 139 PVIFCGDLNVAHKEIDLKNP---------------KSNRKNPGFSDEEREKFTCVLEEG- 182
Query: 142 LIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRM--RIDYFIVSEELKDRIIACEMQGHGI 199
ID YR+L+ E+ + +SW +G R K + R+DYF++SE LK +I ++
Sbjct: 183 FIDTYRYLYPEQ--EGAYSWWSYRMGA-RAKNIGWRLDYFVISERLKHKITDAKINSE-- 237
Query: 200 ELEGFYGSDHCPVSLEL 216
GSDHCPV L +
Sbjct: 238 ----VTGSDHCPVELRM 250
>gi|429726547|ref|ZP_19261335.1| exodeoxyribonuclease III [Prevotella sp. oral taxon 473 str. F0040]
gi|429146016|gb|EKX89089.1| exodeoxyribonuclease III [Prevotella sp. oral taxon 473 str. F0040]
Length = 267
Score = 107 bits (268), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 66/194 (34%), Positives = 100/194 (51%), Gaps = 28/194 (14%)
Query: 23 LSALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-K 81
L +++ +GRVI EFE YLL Y PN+ ++ R WD + +V Q K
Sbjct: 97 LGIEEHDHEGRVITLEFEDLYLLTVYTPNS--QDGLRRLDYRMTWDDDFRAYVQQLDAHK 154
Query: 82 PLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGR 141
P++ CGDLNV+H+EID+ +P K + GFT ER++F +L+ G
Sbjct: 155 PVVICGDLNVAHQEIDLKNP---------------KTNRKNAGFTDEERQKFSQLLEAG- 198
Query: 142 LIDAYRFLHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIE 200
D YRF + D+ +S WS + + RIDYF+ S+ L DR+++ ++
Sbjct: 199 FTDTYRFFN--PDLTDSYSWWSYRFKAREKNAGWRIDYFVTSQSLNDRLVSADIH----- 251
Query: 201 LEGFYGSDHCPVSL 214
+ +GSDHCPV L
Sbjct: 252 -QEIFGSDHCPVEL 264
>gi|423367719|ref|ZP_17345151.1| exodeoxyribonuclease [Bacillus cereus VD142]
gi|401083372|gb|EJP91630.1| exodeoxyribonuclease [Bacillus cereus VD142]
Length = 252
Score = 107 bits (267), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 66/197 (33%), Positives = 107/197 (54%), Gaps = 30/197 (15%)
Query: 23 LSALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GK 81
L +++ +GRVI EF+ FY++ Y PN+ K R +W+ + ++ + K
Sbjct: 81 LGIEEHDQEGRVITLEFDDFYMITLYTPNS--KRGLERLDYRMEWEDDFRAYIKRLDEKK 138
Query: 82 PLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGR 141
P+I+CGDLNV+H+E+D+ +P K + PGF+ ER++F +L+EG
Sbjct: 139 PVIFCGDLNVAHKEVDLKNP---------------KSNRKNPGFSDEEREKFTCVLEEG- 182
Query: 142 LIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRM--RIDYFIVSEELKDRIIACEMQGHGI 199
ID YR+L+ D + +SW +G R K + R+DYF++SE LK +I ++ +
Sbjct: 183 FIDTYRYLY--PDQEGAYSWWSYRMGA-RAKNIGWRLDYFVISERLKHKITDAKINSEVM 239
Query: 200 ELEGFYGSDHCPVSLEL 216
GSDHCPV L +
Sbjct: 240 ------GSDHCPVELHI 250
>gi|258512235|ref|YP_003185669.1| exodeoxyribonuclease III Xth [Alicyclobacillus acidocaldarius
subsp. acidocaldarius DSM 446]
gi|257478961|gb|ACV59280.1| exodeoxyribonuclease III Xth [Alicyclobacillus acidocaldarius
subsp. acidocaldarius DSM 446]
Length = 252
Score = 107 bits (267), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 68/189 (35%), Positives = 96/189 (50%), Gaps = 26/189 (13%)
Query: 29 EPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCG 87
+P+GR+I EF +FY++ Y PN K + + R +W+ ++ KP+I CG
Sbjct: 87 DPEGRIITLEFPSFYVVTVYTPNA--KRDLSRLPYRLEWEDAFCAYLCALDREKPVIACG 144
Query: 88 DLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYR 147
DLNV+HEEID+ + K + G GFT ER + +L G +D +R
Sbjct: 145 DLNVAHEEIDIKNA---------------KSNRGNSGFTDEERAKMTELLAAG-FVDTFR 188
Query: 148 FLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGS 207
LH D WS P + R RIDYF+VSE L+DRI+ + H + GS
Sbjct: 189 ALHPNV-TDKYTWWSNMPGVRERNIGWRIDYFLVSERLRDRILDARIDDHVL------GS 241
Query: 208 DHCPVSLEL 216
DHCPV LE+
Sbjct: 242 DHCPVVLEV 250
>gi|304438523|ref|ZP_07398463.1| exodeoxyribonuclease III [Selenomonas sp. oral taxon 149 str.
67H29BP]
gi|304368606|gb|EFM22291.1| exodeoxyribonuclease III [Selenomonas sp. oral taxon 149 str.
67H29BP]
Length = 250
Score = 107 bits (267), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 69/192 (35%), Positives = 97/192 (50%), Gaps = 28/192 (14%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIW 85
+++ +GRVI EF YL+ Y PN K R W+ + F+L + KP++
Sbjct: 84 EHDHEGRVITMEFNDVYLVTVYTPNA--KRALERLDYRMTWEDAFRAFLLDLRAKKPVVV 141
Query: 86 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 145
CGDLNV+H EID+ +P K + GFT ER +F +L G +D
Sbjct: 142 CGDLNVAHTEIDLKNP---------------KSNRRNAGFTDEERGKFTELLNAG-FVDT 185
Query: 146 YRFLHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGF 204
+R L+ D+ ++ WS + RIDYF+VSEEL+DRI A E+
Sbjct: 186 FRALY--PDLTGAYTWWSYLRHARETNAGWRIDYFLVSEELRDRIAAAEIHAD------V 237
Query: 205 YGSDHCPVSLEL 216
+GSDHCPVSL L
Sbjct: 238 FGSDHCPVSLTL 249
>gi|377832034|ref|ZP_09814998.1| exodeoxyribonuclease III Xth [Lactobacillus mucosae LM1]
gi|377554041|gb|EHT15756.1| exodeoxyribonuclease III Xth [Lactobacillus mucosae LM1]
Length = 252
Score = 107 bits (267), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 63/195 (32%), Positives = 105/195 (53%), Gaps = 26/195 (13%)
Query: 23 LSALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-K 81
++ +++ +GRVI E+ FYL+NTY PN+G + + F R +++ E+V Q S K
Sbjct: 81 INVPEFDHEGRVITLEYPDFYLINTYVPNSGAELKRLDF--RHGFNEAFYEYVNQLSQQK 138
Query: 82 PLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGR 141
++WCGDLNV+H+EID+ +P+ + PGFT ER F +LK G
Sbjct: 139 SIVWCGDLNVAHQEIDLKNPQ---------------SNHHHPGFTDEERFDFSKLLKSG- 182
Query: 142 LIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIEL 201
D +R+ + +++ + WS + R RIDYF+ S +L +++ ++
Sbjct: 183 FTDTFRYFYPDQEHSYSW-WSYRFHARQRNAGWRIDYFVASADLDSQLVDAKIH------ 235
Query: 202 EGFYGSDHCPVSLEL 216
+ GSDHCPV L++
Sbjct: 236 DQILGSDHCPVELDI 250
>gi|303234331|ref|ZP_07320970.1| exodeoxyribonuclease III [Finegoldia magna BVS033A4]
gi|302494447|gb|EFL54214.1| exodeoxyribonuclease III [Finegoldia magna BVS033A4]
Length = 253
Score = 107 bits (267), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 66/198 (33%), Positives = 105/198 (53%), Gaps = 26/198 (13%)
Query: 21 FLLSALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFV-LQCS 79
F + +++ +GRVI E+E F+L+N Y PN+ K E + R W+ ++ +
Sbjct: 80 FGIGIDEHDTEGRVITCEYEDFFLVNVYTPNSKQKLERLDY--RMVWEDEFHNYLNILRD 137
Query: 80 GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKE 139
KP+I CGDLNV+H EID+ +P+ N+ GFT ER + +L +
Sbjct: 138 RKPVIVCGDLNVAHNEIDLKNPQ------------SNRR---SAGFTDEERNKMSLLLND 182
Query: 140 GRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGI 199
G ID +R+ + +K + + WS + R RIDYFIVS++LKD ++ ++
Sbjct: 183 G-YIDTFRYFYPDKTDEYSY-WSYFAKARERNAGWRIDYFIVSDDLKDNLVDAKIH---- 236
Query: 200 ELEGFYGSDHCPVSLELS 217
+ GSDHCPV LE++
Sbjct: 237 --QSIMGSDHCPVELEIN 252
>gi|443711514|gb|ELU05263.1| hypothetical protein CAPTEDRAFT_159745 [Capitella teleta]
Length = 307
Score = 107 bits (267), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 69/189 (36%), Positives = 102/189 (53%), Gaps = 27/189 (14%)
Query: 28 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIWC 86
++ +GRVI AEF+ FY + Y PN G S+ R KWD +E++ K P++ C
Sbjct: 140 HDKEGRVITAEFDKFYFVTAYVPNAGRGLPRLSY-RSEKWDPDFREYLKNLDAKKPVVMC 198
Query: 87 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 146
GDLNV+H+EID+++P K + GFT ER+ F +L+ G +DA+
Sbjct: 199 GDLNVAHKEIDIANP---------------KSNKKSAGFTPQERQGFSELLEAG-FVDAF 242
Query: 147 RFLHKEKDMDCGF-SWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 205
R L+ E+ + ++ GN GK G R+DYF+VSE++KD I ++
Sbjct: 243 RELYPEETKKYSYWTYMGNARGKNVG--WRLDYFVVSEKIKDGICDSLIRSE------VM 294
Query: 206 GSDHCPVSL 214
GSDHCPV L
Sbjct: 295 GSDHCPVVL 303
>gi|421858846|ref|ZP_16291099.1| exonuclease III [Paenibacillus popilliae ATCC 14706]
gi|410831608|dbj|GAC41536.1| exonuclease III [Paenibacillus popilliae ATCC 14706]
Length = 257
Score = 107 bits (266), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 68/192 (35%), Positives = 101/192 (52%), Gaps = 28/192 (14%)
Query: 29 EPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCG 87
EP+GR+I EFE+FYL+ Y PN K + + + R +W++R + ++ + KP+I CG
Sbjct: 86 EPEGRIITLEFESFYLVTVYTPNA--KRDLSRLEYRLEWEERFRRYLQELDAHKPVIVCG 143
Query: 88 DLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYR 147
DLNV+H+EID+ + K + G GFT ER + +L+ G ID +R
Sbjct: 144 DLNVAHQEIDLKNA---------------KSNQGNSGFTPEERDKMTRLLEAG-FIDTFR 187
Query: 148 FLHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYG 206
H+ D ++ WS P + R RIDYF+VS L D I ++ G
Sbjct: 188 --HRYPDRTDAYTWWSFMPKVRERNIGWRIDYFLVSARLNDFIKDAKIDA------AITG 239
Query: 207 SDHCPVSLELSE 218
SDHCPV LE+ +
Sbjct: 240 SDHCPVILEMED 251
>gi|404330185|ref|ZP_10970633.1| exodeoxyribonuclease III [Sporolactobacillus vineae DSM 21990 =
SL153]
Length = 252
Score = 107 bits (266), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 68/194 (35%), Positives = 104/194 (53%), Gaps = 30/194 (15%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIW 85
+++ +GRVI E+E +YL+ Y PN + F R KW + F+ + KP+++
Sbjct: 85 EFDHEGRVITLEYEDYYLMTVYTPNAQRDLKRLGF--RLKWGQAFTNFIDRLDRRKPVVF 142
Query: 86 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 145
CGDLNV+H+ ID+ +P K + GFT ER+ F +L G ID+
Sbjct: 143 CGDLNVAHQAIDLKNP---------------KSNMKNAGFTAEERQDFSELLDTG-FIDS 186
Query: 146 YRFLHKEKDMDCGFSWSGNPIGKYRGKRM--RIDYFIVSEELKDRIIACEMQGHGIELEG 203
+R+LH D + +SW + +G R + + RIDYF++SE LK RI ++ L
Sbjct: 187 FRYLH--PDREGAYSW-WSYMGNARARNVGWRIDYFVISERLKKRIKDAKI------LAD 237
Query: 204 FYGSDHCPVSLELS 217
GSDHCPV +EL+
Sbjct: 238 VRGSDHCPVEIELA 251
>gi|452992928|emb|CCQ95587.1| apurinic/apyrimidinic endonuclease [Clostridium ultunense Esp]
Length = 250
Score = 107 bits (266), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 70/195 (35%), Positives = 101/195 (51%), Gaps = 26/195 (13%)
Query: 23 LSALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGK 81
L +++ +GRVI EFE FYL+N Y PN+ + E R W+ + ++ + S K
Sbjct: 80 LGIEEHDKEGRVITLEFEDFYLVNVYTPNS--QRELTRLDYRMTWEDEFRNYLKELDSIK 137
Query: 82 PLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGR 141
P+I CGDLNV+H+EID+ +P + + N GFT ER + +L G
Sbjct: 138 PVILCGDLNVAHKEIDLKNP---STNRRNA------------GFTDEERGKMTELLGTG- 181
Query: 142 LIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIEL 201
ID +R+ + +K+ D WS + R RIDYFIVSE KDR+ ++
Sbjct: 182 FIDTFRYFYPDKE-DAYTWWSYMRKARDRNVGWRIDYFIVSERFKDRLKDAQIHSE---- 236
Query: 202 EGFYGSDHCPVSLEL 216
GSDHCPV LE+
Sbjct: 237 --IMGSDHCPVMLEI 249
>gi|334127299|ref|ZP_08501227.1| exodeoxyribonuclease III [Centipeda periodontii DSM 2778]
gi|333389799|gb|EGK60957.1| exodeoxyribonuclease III [Centipeda periodontii DSM 2778]
Length = 255
Score = 107 bits (266), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 70/192 (36%), Positives = 98/192 (51%), Gaps = 28/192 (14%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIW 85
+++ +GRVI EFE YL+ Y PN+ K R W+ + F+L + KP++
Sbjct: 89 EHDHEGRVITMEFEDIYLVTVYTPNS--KNALARLDYRLVWEDAFRAFLLDLRAKKPVVV 146
Query: 86 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 145
CGDLNV+H EID+ +P K + GFT ER + +L G ID
Sbjct: 147 CGDLNVAHTEIDLKNP---------------KSNRRNAGFTDEERGKLTELLGAG-FIDT 190
Query: 146 YRFLHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGF 204
+R L+ D+ ++ WS + RIDYF+VSEEL+DRI A E+
Sbjct: 191 FRALY--PDLTGAYTWWSYLRHARETNAGWRIDYFLVSEELRDRIAAAEIHAD------V 242
Query: 205 YGSDHCPVSLEL 216
+GSDHCPVSL L
Sbjct: 243 FGSDHCPVSLTL 254
>gi|297587792|ref|ZP_06946436.1| exodeoxyribonuclease III [Finegoldia magna ATCC 53516]
gi|302380031|ref|ZP_07268510.1| exodeoxyribonuclease III [Finegoldia magna ACS-171-V-Col3]
gi|297574481|gb|EFH93201.1| exodeoxyribonuclease III [Finegoldia magna ATCC 53516]
gi|302312257|gb|EFK94259.1| exodeoxyribonuclease III [Finegoldia magna ACS-171-V-Col3]
Length = 253
Score = 107 bits (266), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 66/198 (33%), Positives = 105/198 (53%), Gaps = 26/198 (13%)
Query: 21 FLLSALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFV-LQCS 79
F + +++ +GRVI E+E F+L+N Y PN+ K E + R W+ ++ +
Sbjct: 80 FGIGIDEHDTEGRVITCEYEDFFLVNVYTPNSKQKLERLDY--RMVWEDEFHNYLNILRD 137
Query: 80 GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKE 139
KP+I CGDLNV+H EID+ +P+ N+ GFT ER + +L +
Sbjct: 138 RKPVIVCGDLNVAHNEIDLKNPQ------------SNRR---SAGFTDEERNKMSLLLND 182
Query: 140 GRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGI 199
G ID +R+ + +K + + WS + R RIDYFIVS++LKD ++ ++
Sbjct: 183 G-YIDTFRYFYPDKTDEYSY-WSYFAKARERNAGWRIDYFIVSDDLKDNLVDAKIH---- 236
Query: 200 ELEGFYGSDHCPVSLELS 217
+ GSDHCPV LE++
Sbjct: 237 --QSIMGSDHCPVELEIN 252
>gi|422344654|ref|ZP_16425579.1| exodeoxyribonuclease [Selenomonas noxia F0398]
gi|355376723|gb|EHG23965.1| exodeoxyribonuclease [Selenomonas noxia F0398]
Length = 250
Score = 107 bits (266), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 69/191 (36%), Positives = 96/191 (50%), Gaps = 26/191 (13%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIW 85
+++ +GRVI E YL+ Y PN K R W+ + F+L + KP++
Sbjct: 84 EHDNEGRVITMELPDVYLVTVYTPNA--KRALERLDYRMAWEDSFRAFLLDLRAKKPVVV 141
Query: 86 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 145
CGDLNV+H EID+ +P K + GFT ER +FG +L G +D
Sbjct: 142 CGDLNVAHTEIDLKNP---------------KSNRRNAGFTDEERGKFGELLAAG-FVDT 185
Query: 146 YRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 205
+R L+ +K + WS + RIDYF+VSEEL+DRI A E+ +
Sbjct: 186 FRALYPDKTGAYTW-WSYLRHARETNAGWRIDYFLVSEELRDRISAAEIHAD------VF 238
Query: 206 GSDHCPVSLEL 216
GSDHCPVSL L
Sbjct: 239 GSDHCPVSLTL 249
>gi|407706141|ref|YP_006829726.1| hypothetical protein MC28_2905 [Bacillus thuringiensis MC28]
gi|407383826|gb|AFU14327.1| Exodeoxyribonuclease [Bacillus thuringiensis MC28]
Length = 252
Score = 107 bits (266), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 68/198 (34%), Positives = 107/198 (54%), Gaps = 30/198 (15%)
Query: 23 LSALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GK 81
L +++ +GRVI EFE FY++ Y PN+ K R +W+ + ++ Q K
Sbjct: 81 LGIEEHDQEGRVITLEFEDFYMITLYTPNS--KRGLERLDYRMEWEDDFRAYIKQLDEKK 138
Query: 82 PLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGR 141
P+I+CGDLNV+H+EID+ +P K + PGF+ ER++F IL+EG
Sbjct: 139 PVIFCGDLNVAHKEIDLKNP---------------KSNRKNPGFSDEEREKFTRILEEG- 182
Query: 142 LIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRM--RIDYFIVSEELKDRIIACEMQGHGI 199
+D YR L+ + + +SW +G R K + R+DYF+VS+ +K +I ++ I
Sbjct: 183 FVDTYRHLY--PNQEGAYSWWSYRMGA-RAKNIGWRLDYFVVSDRIKGQITDAKINSEII 239
Query: 200 ELEGFYGSDHCPVSLELS 217
GSDHCPV L ++
Sbjct: 240 ------GSDHCPVELHIN 251
>gi|187933475|ref|YP_001885926.1| exodeoxyribonuclease III [Clostridium botulinum B str. Eklund 17B]
gi|187721628|gb|ACD22849.1| exodeoxyribonuclease III [Clostridium botulinum B str. Eklund 17B]
Length = 251
Score = 107 bits (266), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 65/189 (34%), Positives = 105/189 (55%), Gaps = 26/189 (13%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIW 85
+++ +GRV+ EFE FYL+N Y PN+ +++ R W+ + ++ + + KP+I
Sbjct: 85 EHDKEGRVLTLEFEEFYLVNVYTPNS--QQKLARIDYRMAWENDFRSYLNELNKAKPVIV 142
Query: 86 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 145
CGDLNV+H+EID+ +P K + GF+ ER++FG +LK G ID
Sbjct: 143 CGDLNVAHKEIDLKNP---------------KNNRNNAGFSDEEREKFGELLKSG-FIDT 186
Query: 146 YRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 205
YR+ + +K+ + WS + RIDYF+VS++ +DR++ ++ IE
Sbjct: 187 YRYFYPDKEGAYSW-WSYRFNARANNAGWRIDYFLVSKDFEDRLVDAKIHTQ-IE----- 239
Query: 206 GSDHCPVSL 214
GSDHCPV L
Sbjct: 240 GSDHCPVEL 248
>gi|229098205|ref|ZP_04229152.1| Exodeoxyribonuclease [Bacillus cereus Rock3-29]
gi|423441531|ref|ZP_17418437.1| exodeoxyribonuclease [Bacillus cereus BAG4X2-1]
gi|423464605|ref|ZP_17441373.1| exodeoxyribonuclease [Bacillus cereus BAG6O-1]
gi|423533947|ref|ZP_17510365.1| exodeoxyribonuclease [Bacillus cereus HuB2-9]
gi|228685103|gb|EEL39034.1| Exodeoxyribonuclease [Bacillus cereus Rock3-29]
gi|402418192|gb|EJV50492.1| exodeoxyribonuclease [Bacillus cereus BAG4X2-1]
gi|402420872|gb|EJV53143.1| exodeoxyribonuclease [Bacillus cereus BAG6O-1]
gi|402464166|gb|EJV95866.1| exodeoxyribonuclease [Bacillus cereus HuB2-9]
Length = 252
Score = 107 bits (266), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 67/198 (33%), Positives = 106/198 (53%), Gaps = 30/198 (15%)
Query: 23 LSALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GK 81
L +++ +GRVI EFE FY++ Y PN+ K R +W+ + ++ Q K
Sbjct: 81 LGIEEHDQEGRVITLEFEDFYMITLYTPNS--KRGLERLDYRMEWEDDFRTYIKQLDEKK 138
Query: 82 PLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGR 141
P+++CGDLNV+H+EID+ +P K + PGF+ ER++F IL+EG
Sbjct: 139 PVVFCGDLNVAHKEIDLKNP---------------KSNRKNPGFSDEEREKFTRILEEG- 182
Query: 142 LIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRM--RIDYFIVSEELKDRIIACEMQGHGI 199
+D YR L+ + + +SW +G R K + R+DYF+VSE +K +I ++
Sbjct: 183 FVDTYRHLY--PNQEGAYSWWSYRMGA-RAKNIGWRLDYFVVSERIKGQITDAKINSE-- 237
Query: 200 ELEGFYGSDHCPVSLELS 217
GSDHCPV L ++
Sbjct: 238 ----IMGSDHCPVELHIN 251
>gi|229104299|ref|ZP_04234968.1| Exodeoxyribonuclease [Bacillus cereus Rock3-28]
gi|229117223|ref|ZP_04246601.1| Exodeoxyribonuclease [Bacillus cereus Rock1-3]
gi|423378475|ref|ZP_17355759.1| exodeoxyribonuclease [Bacillus cereus BAG1O-2]
gi|423448243|ref|ZP_17425122.1| exodeoxyribonuclease [Bacillus cereus BAG5O-1]
gi|423540784|ref|ZP_17517175.1| exodeoxyribonuclease [Bacillus cereus HuB4-10]
gi|423547021|ref|ZP_17523379.1| exodeoxyribonuclease [Bacillus cereus HuB5-5]
gi|423623188|ref|ZP_17598966.1| exodeoxyribonuclease [Bacillus cereus VD148]
gi|228666123|gb|EEL21587.1| Exodeoxyribonuclease [Bacillus cereus Rock1-3]
gi|228678997|gb|EEL33205.1| Exodeoxyribonuclease [Bacillus cereus Rock3-28]
gi|401128837|gb|EJQ36520.1| exodeoxyribonuclease [Bacillus cereus BAG5O-1]
gi|401171972|gb|EJQ79193.1| exodeoxyribonuclease [Bacillus cereus HuB4-10]
gi|401178742|gb|EJQ85915.1| exodeoxyribonuclease [Bacillus cereus HuB5-5]
gi|401258965|gb|EJR65143.1| exodeoxyribonuclease [Bacillus cereus VD148]
gi|401635242|gb|EJS52998.1| exodeoxyribonuclease [Bacillus cereus BAG1O-2]
Length = 252
Score = 107 bits (266), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 67/198 (33%), Positives = 106/198 (53%), Gaps = 30/198 (15%)
Query: 23 LSALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GK 81
L +++ +GRVI EFE FY++ Y PN+ K R +W+ + ++ Q K
Sbjct: 81 LGIEEHDQEGRVITLEFEDFYMITLYTPNS--KRGLERLDYRMEWEDDFRTYIKQLDEKK 138
Query: 82 PLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGR 141
P+++CGDLNV+H+EID+ +P K + PGF+ ER++F IL+EG
Sbjct: 139 PVVFCGDLNVAHKEIDLKNP---------------KSNRKNPGFSDEEREKFTRILEEG- 182
Query: 142 LIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRM--RIDYFIVSEELKDRIIACEMQGHGI 199
+D YR L+ + + +SW +G R K + R+DYF+VSE +K +I ++
Sbjct: 183 FVDTYRHLY--PNQEGAYSWWSYRMGA-RAKNIGWRLDYFVVSERIKGQITDAKINSE-- 237
Query: 200 ELEGFYGSDHCPVSLELS 217
GSDHCPV L ++
Sbjct: 238 ----IMGSDHCPVELHIN 251
>gi|423483329|ref|ZP_17460019.1| exodeoxyribonuclease III (xth) [Bacillus cereus BAG6X1-2]
gi|401140880|gb|EJQ48435.1| exodeoxyribonuclease III (xth) [Bacillus cereus BAG6X1-2]
Length = 252
Score = 107 bits (266), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 66/197 (33%), Positives = 108/197 (54%), Gaps = 30/197 (15%)
Query: 23 LSALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GK 81
L +++ +GRVI EF+ FY++ Y PN+ K R +W+ + ++ + K
Sbjct: 81 LGIEEHDQEGRVITLEFDDFYMITLYTPNS--KRGLERLDYRMEWEDDFRAYIKRLDEKK 138
Query: 82 PLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGR 141
P+++CGDLNV+H+EID+ +P K + PGF+ ER++ +L+EG
Sbjct: 139 PVVFCGDLNVAHKEIDLKNP---------------KSNRKNPGFSDEEREKITRVLEEG- 182
Query: 142 LIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRM--RIDYFIVSEELKDRIIACEMQGHGI 199
ID YR+L+ E+ + +SW +G R K + R+DYFI+SE LK +I+ ++ +
Sbjct: 183 FIDTYRYLYPEQ--EGAYSWWSYRMGA-RAKNIGWRLDYFIISERLKHKILDAKINSEVM 239
Query: 200 ELEGFYGSDHCPVSLEL 216
GSDHCPV L +
Sbjct: 240 ------GSDHCPVELHM 250
>gi|306820340|ref|ZP_07453979.1| exodeoxyribonuclease III [Eubacterium yurii subsp. margaretiae ATCC
43715]
gi|402309414|ref|ZP_10828407.1| exodeoxyribonuclease III [Eubacterium sp. AS15]
gi|304551669|gb|EFM39621.1| exodeoxyribonuclease III [Eubacterium yurii subsp. margaretiae ATCC
43715]
gi|400372381|gb|EJP25325.1| exodeoxyribonuclease III [Eubacterium sp. AS15]
Length = 251
Score = 106 bits (265), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 64/196 (32%), Positives = 105/196 (53%), Gaps = 26/196 (13%)
Query: 23 LSALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK- 81
L +++ +GR+I E+ FY+ Y PN+ K+E R++W+ +EF K
Sbjct: 80 LGKEEHDDEGRLITLEYPEFYVSTVYTPNS--KQELLRLDYRQEWEDEFREFFKNLDAKK 137
Query: 82 PLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGR 141
P+I CGD+NV+H+EID+ +P K + PGFT ER++F +L G
Sbjct: 138 PVIICGDMNVAHKEIDLKNP---------------KTNRKNPGFTDEEREKFTLLLDAG- 181
Query: 142 LIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIEL 201
D +R+ + +K+ + + WS + RIDYF+VS+ L++++ A +
Sbjct: 182 FTDTFRYFYPDKENEYSW-WSYRFNARKNNTGWRIDYFLVSDRLQEKLTAASIH------ 234
Query: 202 EGFYGSDHCPVSLELS 217
+ +GSDHCPVS+ELS
Sbjct: 235 QDVFGSDHCPVSVELS 250
>gi|289435119|ref|YP_003464991.1| exodeoxyribonuclease III [Listeria seeligeri serovar 1/2b str.
SLCC3954]
gi|289171363|emb|CBH27905.1| exodeoxyribonuclease III [Listeria seeligeri serovar 1/2b str.
SLCC3954]
Length = 251
Score = 106 bits (265), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 66/193 (34%), Positives = 104/193 (53%), Gaps = 28/193 (14%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIW 85
+++ +GRVI EFE F+++ Y PN+ + E R ++ I +V + KP++
Sbjct: 84 EHDTEGRVITLEFEKFFMVTVYTPNS--QAELKRLDYRMTFEDAILAYVKKLDETKPVVL 141
Query: 86 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 145
CGDLNV+HEEID+ +P K + GF+ ER +F A L+ G +D+
Sbjct: 142 CGDLNVAHEEIDLKNP---------------KTNRKNAGFSDEERAKFTAFLEAG-FVDS 185
Query: 146 YRFLHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGF 204
+R+ + D++ +S WS + R RIDYF+VSE LKD ++ ++ +
Sbjct: 186 FRYFY--PDLEDAYSWWSYRMNARARNIGWRIDYFVVSERLKDNLVDAKIHPDVL----- 238
Query: 205 YGSDHCPVSLELS 217
GSDHCPV LEL+
Sbjct: 239 -GSDHCPVELELN 250
>gi|227509865|ref|ZP_03939914.1| exodeoxyribonuclease III [Lactobacillus brevis subsp. gravesensis
ATCC 27305]
gi|227190789|gb|EEI70856.1| exodeoxyribonuclease III [Lactobacillus brevis subsp. gravesensis
ATCC 27305]
Length = 252
Score = 106 bits (265), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 68/193 (35%), Positives = 99/193 (51%), Gaps = 26/193 (13%)
Query: 23 LSALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGK 81
+ A +++ +GR I E+ FYL+ +Y PN+G K + F R WDK ++ Q S K
Sbjct: 80 IQAPEFDHEGRAITLEYPNFYLVTSYVPNSGAKLKRLDF--RMGWDKAFHAYLNQLDSHK 137
Query: 82 PLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGR 141
P+I CGDLNV+H EID+ +P K + GFT ER+ F +L +G
Sbjct: 138 PVILCGDLNVAHHEIDLKNP---------------KSNHHNAGFTDEERQSFTKLLDQG- 181
Query: 142 LIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIEL 201
+D +R + +K+ D WS + R RIDYF+ S+ L D I ++ L
Sbjct: 182 FMDTFRHFYPDKE-DIYSWWSYRFHSRDRNAGWRIDYFVTSKRLADHISDSKI------L 234
Query: 202 EGFYGSDHCPVSL 214
+GSDHCPV L
Sbjct: 235 TDIFGSDHCPVEL 247
>gi|422419400|ref|ZP_16496355.1| exodeoxyribonuclease III, partial [Listeria seeligeri FSL N1-067]
gi|313632791|gb|EFR99747.1| exodeoxyribonuclease III [Listeria seeligeri FSL N1-067]
Length = 251
Score = 106 bits (265), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 66/193 (34%), Positives = 104/193 (53%), Gaps = 28/193 (14%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIW 85
+++ +GRVI EFE F+++ Y PN+ + E R ++ I +V + KP++
Sbjct: 84 EHDTEGRVITLEFEKFFMVTVYTPNS--QAELKRLDYRMTFEDAILAYVKKLDETKPVVL 141
Query: 86 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 145
CGDLNV+HEEID+ +P K + GF+ ER +F A L+ G +D+
Sbjct: 142 CGDLNVAHEEIDLKNP---------------KTNRKNAGFSDEERAKFTAFLEAG-FVDS 185
Query: 146 YRFLHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGF 204
+R+ + D++ +S WS + R RIDYF+VSE LKD ++ ++ +
Sbjct: 186 FRYFY--PDLEDAYSWWSYRMNARARNIGWRIDYFVVSERLKDNLVDAKIHPDVL----- 238
Query: 205 YGSDHCPVSLELS 217
GSDHCPV LEL+
Sbjct: 239 -GSDHCPVELELN 250
>gi|288799645|ref|ZP_06405104.1| exodeoxyribonuclease III [Prevotella sp. oral taxon 299 str. F0039]
gi|288332893|gb|EFC71372.1| exodeoxyribonuclease III [Prevotella sp. oral taxon 299 str. F0039]
Length = 250
Score = 106 bits (265), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 62/193 (32%), Positives = 105/193 (54%), Gaps = 29/193 (15%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIW 85
+++ +GRV+ EFE FYL+ Y PN+ ++E R +W++ Q ++++ + KP++
Sbjct: 84 QHDHEGRVVTLEFEQFYLVTVYTPNS--QDELKRLDYRMEWERDFQAYLVKLDASKPVVV 141
Query: 86 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 145
CGD+NV+H+EID+ +P K + GFT ER++ +L G ID
Sbjct: 142 CGDMNVAHQEIDLKNP---------------KTNRRNAGFTDEEREKMTNLLDNG-FIDT 185
Query: 146 YRFLHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGF 204
+R+L+ E + +S WS + + RIDYF++SE LK + ++
Sbjct: 186 FRYLYPE---EVTYSWWSYRFKAREKNTGWRIDYFLISERLKSNLTDAKIH------TDI 236
Query: 205 YGSDHCPVSLELS 217
+GSDHCPV L+L+
Sbjct: 237 FGSDHCPVELDLT 249
>gi|20808602|ref|NP_623773.1| exonuclease III [Thermoanaerobacter tengcongensis MB4]
gi|20517232|gb|AAM25377.1| Exonuclease III [Thermoanaerobacter tengcongensis MB4]
Length = 258
Score = 106 bits (265), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 67/192 (34%), Positives = 104/192 (54%), Gaps = 26/192 (13%)
Query: 28 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWC 86
++ +GRVI E++ F+L+N Y PN+ + R +W++ + ++L+ S KP+I C
Sbjct: 88 HDKEGRVITLEYKKFFLVNAYTPNS--QRGLTRLNYRMEWEEDFRSYLLKLDSVKPVILC 145
Query: 87 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 146
GDLNV+H+EID+ +P AA + N GFT ER++ +L G ID +
Sbjct: 146 GDLNVAHQEIDIKNP---AANRRNA------------GFTDEEREKMTILLNSG-FIDTF 189
Query: 147 RFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYG 206
R+ + +K D WS + + R+DYFIVSE LKD +I ++ + G
Sbjct: 190 RYFYPDKK-DAYTWWSYMHNAREKNIGWRVDYFIVSERLKDYLIDSQIHSEVM------G 242
Query: 207 SDHCPVSLELSE 218
SDHCPV L + E
Sbjct: 243 SDHCPVVLIVKE 254
>gi|126651518|ref|ZP_01723722.1| exodeoxyribonuclease [Bacillus sp. B14905]
gi|126591771|gb|EAZ85867.1| exodeoxyribonuclease [Bacillus sp. B14905]
Length = 251
Score = 106 bits (265), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 65/189 (34%), Positives = 98/189 (51%), Gaps = 26/189 (13%)
Query: 29 EPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWCG 87
+ +GR+I E++ FYL+N Y PN + + R W+ R+ ++ S KP+++CG
Sbjct: 86 QDEGRIITLEYQNFYLVNVYTPNA--QRDLARLPLRLTWEDRLAGYLQDLNSKKPVVYCG 143
Query: 88 DLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYR 147
DLNV+H EID+ + K + G GFT ER +F +L G +D++R
Sbjct: 144 DLNVAHTEIDLKNA---------------KSNVGNSGFTYEERAKFSELLASG-FVDSFR 187
Query: 148 FLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGS 207
+ H + D WS + R RIDYFIVSE+LK++I + H GS
Sbjct: 188 YKHP-NETDHFTWWSYMNKVRERNIGWRIDYFIVSEQLKNQIDQATIHPH------IMGS 240
Query: 208 DHCPVSLEL 216
DHCP+ L+L
Sbjct: 241 DHCPIELQL 249
>gi|294055155|ref|YP_003548813.1| exodeoxyribonuclease III Xth [Coraliomargarita akajimensis DSM
45221]
gi|293614488|gb|ADE54643.1| exodeoxyribonuclease III Xth [Coraliomargarita akajimensis DSM
45221]
Length = 262
Score = 106 bits (264), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 72/198 (36%), Positives = 103/198 (52%), Gaps = 34/198 (17%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQE----FVLQCSG-- 80
K++ +GRVI AEFE +YL+ Y PN+ +E +R R+ D R E F+ G
Sbjct: 89 KHDQEGRVITAEFEDYYLVTVYTPNSQNHDEN---KRPRRLDYRTLEWDVDFLAYVKGLE 145
Query: 81 --KPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILK 138
KP+++CGDLNV+H EID+++P K + GFT ER RF AI++
Sbjct: 146 VTKPVVFCGDLNVAHTEIDLANP---------------KTNRKNAGFTDEERGRFDAIIE 190
Query: 139 EGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHG 198
G ID +R L+ ++ + WS + R RIDYF VS+ +K++I +
Sbjct: 191 AG-FIDTFRHLYPDRTEQYSW-WSYRAAARQRNIGWRIDYFCVSDAVKNQIRDATI---- 244
Query: 199 IELEGFYGSDHCPVSLEL 216
L GSDHCPV L L
Sbjct: 245 --LADTLGSDHCPVGLRL 260
>gi|402584375|gb|EJW78317.1| exodeoxyribonuclease III [Wuchereria bancrofti]
Length = 314
Score = 106 bits (264), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 63/186 (33%), Positives = 102/186 (54%), Gaps = 25/186 (13%)
Query: 32 GRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLN 90
GR+I+AE+E++YL+N Y PN+G + +R+ WD F+ + KP+++ GDLN
Sbjct: 151 GRIIIAEYESYYLINAYVPNSG--RGLVNLDKRKIWDDYYLTFIKKLDLSKPVVYVGDLN 208
Query: 91 VSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLH 150
V+H+EID+++P+ NK GFT ER F +L G +D +R L+
Sbjct: 209 VAHQEIDLANPK----------TNRNK----TAGFTDQERNDFTRLLDAG-FVDVFRRLN 253
Query: 151 KEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHC 210
+K+ F WS + + R+DYF+VSE + +++ C++ L GSDHC
Sbjct: 254 PDKEGAYTF-WSNMHNAREKNVGWRLDYFVVSERIMNKVKKCDI------LHSIKGSDHC 306
Query: 211 PVSLEL 216
P+SL +
Sbjct: 307 PLSLTI 312
>gi|302334904|ref|YP_003800111.1| exodeoxyribonuclease III Xth [Olsenella uli DSM 7084]
gi|301318744|gb|ADK67231.1| exodeoxyribonuclease III Xth [Olsenella uli DSM 7084]
Length = 263
Score = 106 bits (264), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 70/188 (37%), Positives = 102/188 (54%), Gaps = 28/188 (14%)
Query: 31 DGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGDL 89
+GRV EF TF+ ++ Y PN+ K+ + R WD+R + F+L+ KP++ CGD
Sbjct: 100 EGRVCALEFPTFWFVDVYTPNS--KQGLARIEERMGWDERFRLFLLELDAHKPIVTCGDF 157
Query: 90 NVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFL 149
NV+H+EID+ +P N E+ PGF+ AER FG +L G D +R L
Sbjct: 158 NVAHQEIDLRNPS------------TNHEN---PGFSDAERDSFGRLLDAG-FTDTFRSL 201
Query: 150 HKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSD 208
+ D++ +S WS + R RIDYF+ SE + DRI +G I E F GSD
Sbjct: 202 N--PDLEGAYSWWSYRMRARERNVGWRIDYFLTSERVADRI-----EGASIHDEVF-GSD 253
Query: 209 HCPVSLEL 216
HCP+ L++
Sbjct: 254 HCPIELQI 261
>gi|384136257|ref|YP_005518971.1| exodeoxyribonuclease III Xth [Alicyclobacillus acidocaldarius
subsp. acidocaldarius Tc-4-1]
gi|339290342|gb|AEJ44452.1| exodeoxyribonuclease III Xth [Alicyclobacillus acidocaldarius
subsp. acidocaldarius Tc-4-1]
Length = 260
Score = 106 bits (264), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 70/199 (35%), Positives = 103/199 (51%), Gaps = 27/199 (13%)
Query: 29 EPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCG 87
+P+GR+I EF +FY++ Y PN K + + R +W+ + ++ KP+I CG
Sbjct: 87 DPEGRIITLEFPSFYVVTVYTPNA--KRDLSRLPYRLEWEDAFRAYLCALDREKPVIACG 144
Query: 88 DLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYR 147
DLNV+H+EID+ + K + G GFT ER + +L G +D +R
Sbjct: 145 DLNVAHQEIDIKNA---------------KSNRGNSGFTDEERAKMTELLDAG-FVDTFR 188
Query: 148 FLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGS 207
L+ + D WS P + R RIDYF+VSE L+D I+ + H + GS
Sbjct: 189 ALYPDV-TDKYTWWSNMPRVRERNIGWRIDYFLVSERLRDCILDARIDDHVL------GS 241
Query: 208 DHCPVSLELS-EASSDSEK 225
DHCPV LE++ EA DS K
Sbjct: 242 DHCPVVLEMALEAWKDSGK 260
>gi|169823955|ref|YP_001691566.1| exodeoxyribonuclease III [Finegoldia magna ATCC 29328]
gi|417925665|ref|ZP_12569084.1| exodeoxyribonuclease III [Finegoldia magna SY403409CC001050417]
gi|167830760|dbj|BAG07676.1| exodeoxyribonuclease III [Finegoldia magna ATCC 29328]
gi|341591291|gb|EGS34499.1| exodeoxyribonuclease III [Finegoldia magna SY403409CC001050417]
Length = 253
Score = 106 bits (264), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 64/192 (33%), Positives = 103/192 (53%), Gaps = 26/192 (13%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFV-LQCSGKPLIW 85
+++ +GRVI E+E F+L+N Y PN+ K E + R W+ ++ + KP+I
Sbjct: 86 EHDTEGRVITCEYEDFFLVNVYTPNSKQKLERLDY--RMVWEDEFHNYLNILRDRKPVIV 143
Query: 86 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 145
CGDLNV+H EID+ +P+ N+ GFT ER + +L +G ID
Sbjct: 144 CGDLNVAHNEIDLKNPQ------------SNRR---SAGFTDEERNKMSLLLNDG-YIDT 187
Query: 146 YRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 205
+R+ + +K + + WS + R RIDYF+VS++LKD ++ ++ +
Sbjct: 188 FRYFYPDKTDEYSY-WSYFAKARERNAGWRIDYFLVSDDLKDNLVDAKIH------QSIM 240
Query: 206 GSDHCPVSLELS 217
GSDHCPV LE++
Sbjct: 241 GSDHCPVELEIN 252
>gi|412987602|emb|CCO20437.1| predicted protein [Bathycoccus prasinos]
Length = 411
Score = 106 bits (264), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 72/208 (34%), Positives = 103/208 (49%), Gaps = 32/208 (15%)
Query: 32 GRVILAEF------ETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC--SGKPL 83
GRVI +F +L+TY+PNNG E S +RRR+WD + + + Q G
Sbjct: 168 GRVIECQFGDDEDANRLVVLSTYSPNNGSGAE--SRERRRRWDDSVLKRLTQLRKEGVDF 225
Query: 84 IWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLI 143
IW GDLNV+ + IDV + A P D+G GFT E++RF IL+
Sbjct: 226 IWNGDLNVAPDGIDVKFDDIKAMENKKASDP----DYGVAGFTRNEQRRFQNILEASEAS 281
Query: 144 DAYRFLHKEKDMDCGFSWSGNPIGKYRGK-------RMRIDYFIVSEELKDRIIAC---- 192
DAYR ++ E+ ++W + K GK MR+D +VS+ LK +I C
Sbjct: 282 DAYRVVNGER---RSYTWRAYTVNKVGGKVFNTVNPGMRLDLMVVSKNLKSKIQRCYHAT 338
Query: 193 ----EMQGHGIELEGFYGSDHCPVSLEL 216
+ + + +E F+GSDHC V LEL
Sbjct: 339 DDLPDTEAMKMPMEKFFGSDHCAVHLEL 366
>gi|169829765|ref|YP_001699923.1| exodeoxyribonuclease [Lysinibacillus sphaericus C3-41]
gi|168994253|gb|ACA41793.1| Exodeoxyribonuclease [Lysinibacillus sphaericus C3-41]
Length = 251
Score = 106 bits (264), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 65/189 (34%), Positives = 98/189 (51%), Gaps = 26/189 (13%)
Query: 29 EPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWCG 87
+ +GR+I E+E FYL+N Y PN + + R W++ + ++ S KP+++CG
Sbjct: 86 QDEGRIITLEYEDFYLVNVYTPNA--QRDLARLPLRLTWEEHLASYLQDLNSKKPVVYCG 143
Query: 88 DLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYR 147
DLNV+H EID+ + K + G GFT ER +F +L G +D++R
Sbjct: 144 DLNVAHTEIDLKNA---------------KSNIGNSGFTYEERAKFSELLASG-FVDSFR 187
Query: 148 FLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGS 207
+ H + D WS + R RIDYFIVSE+LK++I + H GS
Sbjct: 188 YKHP-NETDHFTWWSYMNKVRERNIGWRIDYFIVSEQLKNQINQATIHPH------IMGS 240
Query: 208 DHCPVSLEL 216
DHCP+ L+L
Sbjct: 241 DHCPIELQL 249
>gi|381184157|ref|ZP_09892815.1| exodeoxyribonuclease III [Listeriaceae bacterium TTU M1-001]
gi|380315948|gb|EIA19409.1| exodeoxyribonuclease III [Listeriaceae bacterium TTU M1-001]
Length = 251
Score = 106 bits (264), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 65/195 (33%), Positives = 101/195 (51%), Gaps = 26/195 (13%)
Query: 23 LSALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-K 81
LS +++ +GRVI EFE FY + Y PN+ + E R +++ +V K
Sbjct: 80 LSVAEHDQEGRVITLEFEQFYFITVYTPNS--QPELARLAYRMSFEEAFLNYVKNLDQEK 137
Query: 82 PLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGR 141
P+I+CGDLNV+H+EID+ +P K + PGF+ ER +F +L+ G
Sbjct: 138 PVIFCGDLNVAHKEIDLKNP---------------KTNRRNPGFSDEERGKFTTVLESG- 181
Query: 142 LIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIEL 201
+D +R + EK+ + WS + R RIDYF+VS L+D++I ++ +
Sbjct: 182 FVDTFRHFYPEKEGAYSW-WSYRMNARARNTGWRIDYFVVSSRLRDKLIDAKIHADVL-- 238
Query: 202 EGFYGSDHCPVSLEL 216
GSDHCPV L +
Sbjct: 239 ----GSDHCPVELTI 249
>gi|419718967|ref|ZP_14246261.1| exodeoxyribonuclease III [Lachnoanaerobaculum saburreum F0468]
gi|383304836|gb|EIC96227.1| exodeoxyribonuclease III [Lachnoanaerobaculum saburreum F0468]
Length = 252
Score = 106 bits (264), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 69/193 (35%), Positives = 105/193 (54%), Gaps = 30/193 (15%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIW 85
+++ +GRVI AE++ FYL+ Y PN+ + R W+ ++VL+ KP+I+
Sbjct: 85 EHDNEGRVITAEYDEFYLITCYTPNS--QRGLTRLDYRMTWEDAFLDYVLKLEEKKPVIF 142
Query: 86 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 145
CGDLNV+H+EID+ +P K + GFT ER + IL G +D+
Sbjct: 143 CGDLNVAHKEIDLKNP---------------KTNRKNAGFTDEERAKMDIILSSG-FVDS 186
Query: 146 YRFLHKEKDMDCGFSWSGNPIGKYRGKRM--RIDYFIVSEELKDRIIACEMQGHGIELEG 203
+R L+ +K +SW + +G R K + RIDYFIVS +LKDRI ++ +
Sbjct: 187 FRVLYPDK--TDAYSW-WSYMGGARAKNVGWRIDYFIVSAKLKDRIKEAKIHSEVL---- 239
Query: 204 FYGSDHCPVSLEL 216
GSDHCPV L++
Sbjct: 240 --GSDHCPVELDI 250
>gi|282877708|ref|ZP_06286523.1| exodeoxyribonuclease III [Prevotella buccalis ATCC 35310]
gi|281300280|gb|EFA92634.1| exodeoxyribonuclease III [Prevotella buccalis ATCC 35310]
Length = 249
Score = 105 bits (263), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 65/192 (33%), Positives = 103/192 (53%), Gaps = 29/192 (15%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIW 85
+++ +GRVI E + F+L+ Y PN+ ++E R +W+ + +V+Q KP+I
Sbjct: 84 EHDHEGRVITMEMDDFFLITVYVPNS--QDELRRLDYRMQWEDDFRAYVMQLDAIKPVII 141
Query: 86 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 145
CGDLNV+HEEID+ +P K + GFT ER++ +L G +D
Sbjct: 142 CGDLNVAHEEIDLKNP---------------KTNRRNAGFTDEEREKMTILLNNG-FVDT 185
Query: 146 YRFLHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGF 204
+R L+ E+ +S WS + + RIDYF++SE LK+R++ ++ +
Sbjct: 186 FRHLYPEQ---VTYSWWSYRFRAREKNAGWRIDYFLISERLKERLVDAKIHTEIL----- 237
Query: 205 YGSDHCPVSLEL 216
GSDHCPV LEL
Sbjct: 238 -GSDHCPVELEL 248
>gi|229168476|ref|ZP_04296199.1| Exodeoxyribonuclease [Bacillus cereus AH621]
gi|423592321|ref|ZP_17568352.1| exodeoxyribonuclease [Bacillus cereus VD048]
gi|228614882|gb|EEK71984.1| Exodeoxyribonuclease [Bacillus cereus AH621]
gi|401230563|gb|EJR37070.1| exodeoxyribonuclease [Bacillus cereus VD048]
Length = 252
Score = 105 bits (263), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 65/198 (32%), Positives = 107/198 (54%), Gaps = 30/198 (15%)
Query: 23 LSALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GK 81
L +++ +GRVI EF+ FY++ Y PN+ K R +W+ + ++ + K
Sbjct: 81 LGIEEHDQEGRVITLEFDDFYMITLYTPNS--KRGLERLDYRMEWEDDFRAYIKRLDEKK 138
Query: 82 PLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGR 141
P+I+CGDLNV+H+E+D+ +P K + PGF+ ER++F +L+ G
Sbjct: 139 PVIFCGDLNVAHKEVDLKNP---------------KSNRKNPGFSDEEREKFTCVLEAG- 182
Query: 142 LIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRM--RIDYFIVSEELKDRIIACEMQGHGI 199
ID YR+L+ D + +SW +G R K + R+DYF++SE LK +I ++ +
Sbjct: 183 FIDTYRYLY--PDQEGAYSWWSYRMGA-RAKNIGWRLDYFVISERLKHKITDAKINSEVM 239
Query: 200 ELEGFYGSDHCPVSLELS 217
GSDHCPV L ++
Sbjct: 240 ------GSDHCPVELHIN 251
>gi|422422487|ref|ZP_16499440.1| exodeoxyribonuclease III [Listeria seeligeri FSL S4-171]
gi|313637385|gb|EFS02862.1| exodeoxyribonuclease III [Listeria seeligeri FSL S4-171]
Length = 251
Score = 105 bits (263), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 66/197 (33%), Positives = 105/197 (53%), Gaps = 28/197 (14%)
Query: 23 LSALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GK 81
L +++ +GRVI EF+ F+++ Y PN+ + E R ++ I +V + K
Sbjct: 80 LGIPEHDDEGRVITLEFDKFFMVTVYTPNS--QAELKRLDYRMTFEDAILAYVKKLDETK 137
Query: 82 PLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGR 141
P++ CGDLNV+HEEID+ +P K + GF+ ER +F A L+ G
Sbjct: 138 PVVLCGDLNVAHEEIDLKNP---------------KTNRKNAGFSDEERAKFTAFLEAG- 181
Query: 142 LIDAYRFLHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIE 200
+D++R+ + D++ +S WS + R RIDYF+VSE LKD ++ ++ +
Sbjct: 182 FVDSFRYFY--PDLEDAYSWWSYRMNARARNTGWRIDYFVVSERLKDNLVDAKIHPDVL- 238
Query: 201 LEGFYGSDHCPVSLELS 217
GSDHCPV LEL+
Sbjct: 239 -----GSDHCPVELELN 250
>gi|229134542|ref|ZP_04263353.1| Exodeoxyribonuclease [Bacillus cereus BDRD-ST196]
gi|228648935|gb|EEL04959.1| Exodeoxyribonuclease [Bacillus cereus BDRD-ST196]
Length = 252
Score = 105 bits (263), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 65/198 (32%), Positives = 106/198 (53%), Gaps = 30/198 (15%)
Query: 23 LSALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GK 81
L +++ +GRVI EF+ FY++ Y PN+ K R +W+ + ++ + K
Sbjct: 81 LGIEEHDQEGRVITLEFDDFYMITLYTPNS--KRGLERLDYRMEWEDDFRAYIKRLDEKK 138
Query: 82 PLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGR 141
P+I+CGDLNV+H+E+D+ +P K + PGF+ ER++F +L+ G
Sbjct: 139 PVIFCGDLNVAHKEVDLKNP---------------KSNRKNPGFSDEEREKFTCVLEAG- 182
Query: 142 LIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRM--RIDYFIVSEELKDRIIACEMQGHGI 199
ID YR+L+ D + +SW +G R K + R+DYF++SE LK +I ++
Sbjct: 183 FIDTYRYLY--PDQEGAYSWWSYRMGA-RAKNIGWRLDYFVISERLKHKITDAKINSE-- 237
Query: 200 ELEGFYGSDHCPVSLELS 217
GSDHCPV L ++
Sbjct: 238 ----IMGSDHCPVELHIN 251
>gi|253580808|ref|ZP_04858071.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
gi|251847878|gb|EES75845.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
Length = 251
Score = 105 bits (263), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 66/193 (34%), Positives = 102/193 (52%), Gaps = 28/193 (14%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIW 85
K++ +GRVI E+E FYL+ Y PN+ + E + R W++ ++L+ KP+I
Sbjct: 84 KHDKEGRVITLEYEKFYLVTVYTPNS--QSELRRLEYRMHWEEDFLAYLLKLQESKPVIC 141
Query: 86 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 145
CGD NV+H+EID+ +P K + GFT ER FG +L+ G ID
Sbjct: 142 CGDFNVAHQEIDLKNP---------------KTNRKNAGFTDEERACFGKVLESG-FIDT 185
Query: 146 YRFLHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGF 204
+R+ + D++ +S WS + + RIDYFI S +LKD++ E+
Sbjct: 186 FRYFY--PDVEGRYSWWSYRFKAREKNAGWRIDYFITSPQLKDKLKGAEIHSE------I 237
Query: 205 YGSDHCPVSLELS 217
GSDHCPV L+++
Sbjct: 238 MGSDHCPVELQIT 250
>gi|170582912|ref|XP_001896345.1| exodeoxyribonuclease III family protein [Brugia malayi]
gi|158596475|gb|EDP34813.1| exodeoxyribonuclease III family protein [Brugia malayi]
Length = 314
Score = 105 bits (263), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 63/186 (33%), Positives = 102/186 (54%), Gaps = 25/186 (13%)
Query: 32 GRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLN 90
GR+I+AE+E++YL+N Y PN+G + +R+ WD F+ + KP+++ GDLN
Sbjct: 151 GRIIIAEYESYYLINAYVPNSG--RGLVNLDKRKIWDDYYLTFIKKLDLSKPVVYVGDLN 208
Query: 91 VSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLH 150
V+H+EID+++P+ NK GFT ER F +L G +D +R L+
Sbjct: 209 VAHQEIDLANPK----------TNRNK----TAGFTDQERNDFTRLLDAG-FVDVFRRLN 253
Query: 151 KEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHC 210
+K+ F WS + + R+DYF+VSE + +++ C++ L GSDHC
Sbjct: 254 PDKEGAYTF-WSNMHNAREKNVGWRLDYFVVSERIMNKVKKCDI------LHSIKGSDHC 306
Query: 211 PVSLEL 216
P+SL +
Sbjct: 307 PLSLTI 312
>gi|323344424|ref|ZP_08084649.1| exodeoxyribonuclease III [Prevotella oralis ATCC 33269]
gi|323094551|gb|EFZ37127.1| exodeoxyribonuclease III [Prevotella oralis ATCC 33269]
Length = 249
Score = 105 bits (263), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 66/192 (34%), Positives = 102/192 (53%), Gaps = 29/192 (15%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIW 85
+++ +GRVI E E F+L+ Y PN+ ++E + R +W+ + ++L KP+I
Sbjct: 84 EHDHEGRVITLETENFFLVTVYTPNS--QDELRRLEYRMRWEDDFKAYLLALDARKPVIV 141
Query: 86 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 145
CGD+NV+HEEID+ +P K + GFT ER++ +L G ID
Sbjct: 142 CGDMNVAHEEIDIKNP---------------KTNRRNAGFTDEEREKMTELLAGG-FIDT 185
Query: 146 YRFLHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGF 204
+R L+ E+ +S WS + R RIDYF++SE LK+RI ++
Sbjct: 186 FRTLYPEQ---VTYSWWSYRFRARERNTGWRIDYFLISERLKERIADAKIH------TDI 236
Query: 205 YGSDHCPVSLEL 216
YGSDHCP+ L+L
Sbjct: 237 YGSDHCPIELDL 248
>gi|255523264|ref|ZP_05390235.1| exodeoxyribonuclease III Xth [Clostridium carboxidivorans P7]
gi|296186225|ref|ZP_06854630.1| exodeoxyribonuclease III [Clostridium carboxidivorans P7]
gi|255513132|gb|EET89401.1| exodeoxyribonuclease III Xth [Clostridium carboxidivorans P7]
gi|296049493|gb|EFG88922.1| exodeoxyribonuclease III [Clostridium carboxidivorans P7]
Length = 252
Score = 105 bits (263), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 65/202 (32%), Positives = 107/202 (52%), Gaps = 26/202 (12%)
Query: 19 FHFLLSALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC 78
F + + +++ +GRVI EF+ FY++ Y PN+ K++ + R KW+ ++++
Sbjct: 76 FTYGIGIEEHDKEGRVITLEFDDFYMVTVYTPNS--KDQLARLEYRMKWENDFRDYLKSL 133
Query: 79 -SGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAIL 137
KP+I CGDLNV+H+EID+ +P K + GFT ER++F L
Sbjct: 134 EKNKPVIMCGDLNVAHKEIDLKNP---------------KTNRKNAGFTDEEREKFTEFL 178
Query: 138 KEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGH 197
G ID YR+ + +K+ + WS + RIDYF VS+ LK+R+++ ++
Sbjct: 179 SAG-FIDTYRYFNPDKEGAYSW-WSYRFNARKNNAGWRIDYFCVSDCLKERLVSADIHTE 236
Query: 198 GIELEGFYGSDHCPVSLELSEA 219
+ GSDHCPV L +S+
Sbjct: 237 VM------GSDHCPVELVISDV 252
>gi|348679732|gb|EGZ19548.1| hypothetical protein PHYSODRAFT_408364 [Phytophthora sojae]
Length = 280
Score = 105 bits (263), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 69/190 (36%), Positives = 102/190 (53%), Gaps = 21/190 (11%)
Query: 29 EPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDK-RIQEFVLQCSGKPLIWCG 87
+ +GR + E+ F+L++TY PN G K E F R +WDK ++E KP++WCG
Sbjct: 107 DQEGRFLALEYPKFWLVHTYVPNAGGKLERLDF-RTNQWDKAMLREMKEMEKTKPVVWCG 165
Query: 88 DLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYR 147
DLNV+H+EID+ +P+ NK GFT ER+ FG IL+ G +D +R
Sbjct: 166 DLNVAHQEIDIHNPK------------GNKR---SAGFTDEERESFGNILENG-FVDTFR 209
Query: 148 FLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEG-FYG 206
LH +K F + N + +G R+DYF+VSE+L +++ + G G
Sbjct: 210 HLHPDKVEYSYFGYRHNMRAQNKG--WRLDYFVVSEKLMPNVVSVFGWERSSYIRGSVVG 267
Query: 207 SDHCPVSLEL 216
SDH P+ LEL
Sbjct: 268 SDHLPIGLEL 277
>gi|423522432|ref|ZP_17498905.1| exodeoxyribonuclease [Bacillus cereus HuA4-10]
gi|401175126|gb|EJQ82329.1| exodeoxyribonuclease [Bacillus cereus HuA4-10]
Length = 252
Score = 105 bits (263), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 67/198 (33%), Positives = 107/198 (54%), Gaps = 30/198 (15%)
Query: 23 LSALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GK 81
L +++ +GRVI EFE FY++ Y PN+ K R +W+ + ++ + K
Sbjct: 81 LGIEEHDQEGRVITLEFEDFYMITLYTPNS--KRGLERLDYRMEWEDDFRAYIKRLDEKK 138
Query: 82 PLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGR 141
P+I+CGDLNV+H+EID+ +P K + PGF+ ER++F L EG
Sbjct: 139 PVIFCGDLNVAHKEIDLKNP---------------KSNRKNPGFSDEEREKFTLAL-EGG 182
Query: 142 LIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRM--RIDYFIVSEELKDRIIACEMQGHGI 199
+D YR+L+ + + +SW +G R K + R+DYF+VSE +K +II ++ +
Sbjct: 183 FVDTYRYLY--PNQEGAYSWWSYLMGA-RAKNIGWRLDYFVVSERIKGQIIDAKINSEVM 239
Query: 200 ELEGFYGSDHCPVSLELS 217
GSDHCPV L ++
Sbjct: 240 ------GSDHCPVELHIN 251
>gi|295704797|ref|YP_003597872.1| exodeoxyribonuclease III [Bacillus megaterium DSM 319]
gi|294802456|gb|ADF39522.1| exodeoxyribonuclease III [Bacillus megaterium DSM 319]
Length = 253
Score = 105 bits (263), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 69/192 (35%), Positives = 106/192 (55%), Gaps = 30/192 (15%)
Query: 29 EPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWCG 87
E +GR+I EFE Y++N Y PN+ K + + R +W+ + ++ + S K +I CG
Sbjct: 85 EDEGRIITLEFEQCYVVNVYTPNS--KRDLARLEERLQWEDDLLVYLKKLNSRKAVILCG 142
Query: 88 DLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYR 147
DLNV+H EID+ +P+ PN+ G GFTI ER + +L G +D +R
Sbjct: 143 DLNVAHAEIDLRNPK------------PNR---GNSGFTIEERGKMTTLLASG-FLDTFR 186
Query: 148 FLHKEKDMDCGFSWSGNPIGKYRGKRM--RIDYFIVSEELKDRIIACEMQGHGIELEGFY 205
+L+ + + ++W + + K R + + RIDYFIVSE +KD I + H +
Sbjct: 187 YLY--PNQEGAYTW-WSYMNKVRERNIGWRIDYFIVSERIKDVIQEAAIHPHVM------ 237
Query: 206 GSDHCPVSLELS 217
GSDHCPV LEL+
Sbjct: 238 GSDHCPVMLELN 249
>gi|229061336|ref|ZP_04198683.1| Exodeoxyribonuclease [Bacillus cereus AH603]
gi|423511766|ref|ZP_17488297.1| exodeoxyribonuclease [Bacillus cereus HuA2-1]
gi|228717951|gb|EEL69596.1| Exodeoxyribonuclease [Bacillus cereus AH603]
gi|402450027|gb|EJV81861.1| exodeoxyribonuclease [Bacillus cereus HuA2-1]
Length = 252
Score = 105 bits (263), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 65/197 (32%), Positives = 107/197 (54%), Gaps = 30/197 (15%)
Query: 23 LSALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GK 81
L +++ +GRVI EF+ FY++ Y PN+ K R +W+ + ++ + K
Sbjct: 81 LGIEEHDQEGRVITLEFDDFYMITLYTPNS--KRGLERLDYRMEWEDDFRAYIKRLDEKK 138
Query: 82 PLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGR 141
P+I+CGDLNV+H+E+D+ +P K + PGF+ ER++F +L+ G
Sbjct: 139 PVIFCGDLNVAHKEVDLKNP---------------KSNRKNPGFSDEEREKFTCVLEAG- 182
Query: 142 LIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRM--RIDYFIVSEELKDRIIACEMQGHGI 199
ID YR+L+ D + +SW +G R K + R+DYF++SE L+ +II ++ +
Sbjct: 183 FIDTYRYLY--PDQEGAYSWWSYRMGA-RAKNIGWRLDYFVISERLEHKIIDAKINSEVM 239
Query: 200 ELEGFYGSDHCPVSLEL 216
GSDHCPV L +
Sbjct: 240 ------GSDHCPVELHI 250
>gi|227522924|ref|ZP_03952973.1| exodeoxyribonuclease III [Lactobacillus hilgardii ATCC 8290]
gi|227089953|gb|EEI25265.1| exodeoxyribonuclease III [Lactobacillus hilgardii ATCC 8290]
Length = 252
Score = 105 bits (262), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 67/193 (34%), Positives = 99/193 (51%), Gaps = 26/193 (13%)
Query: 23 LSALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGK 81
+ A +++ +GR I E+ FYL+ +Y PN+G K + F R WDK ++ Q S K
Sbjct: 80 IQAPEFDHEGRAITLEYPNFYLVTSYVPNSGAKLKRLDF--RMGWDKAFHAYLNQLDSHK 137
Query: 82 PLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGR 141
P+I CGDLNV+H EID+ +P+ + GFT ER+ F +L +G
Sbjct: 138 PVILCGDLNVAHHEIDLKNPQ---------------SNHHNAGFTDEERQSFTKLLDQG- 181
Query: 142 LIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIEL 201
+D +R + +K+ D WS + R RIDYF+ S+ L D I ++ L
Sbjct: 182 FMDTFRHFYPDKE-DIYSWWSYRFHSRDRNAGWRIDYFVTSKRLADHISDSKI------L 234
Query: 202 EGFYGSDHCPVSL 214
+GSDHCPV L
Sbjct: 235 TDIFGSDHCPVEL 247
>gi|238928084|ref|ZP_04659844.1| exodeoxyribonuclease III Xth [Selenomonas flueggei ATCC 43531]
gi|238884044|gb|EEQ47682.1| exodeoxyribonuclease III Xth [Selenomonas flueggei ATCC 43531]
Length = 250
Score = 105 bits (262), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 68/190 (35%), Positives = 96/190 (50%), Gaps = 26/190 (13%)
Query: 28 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWC 86
++ +GRVI EF+ YL+ Y PN K R W+ + F+L + KP++ C
Sbjct: 85 HDNEGRVITMEFDDVYLVTVYTPNA--KRALERLDYRMMWEDAFRAFLLGLRAKKPVVVC 142
Query: 87 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 146
GDLNV+H EID+ +P K + GFT ER +F +L+ G ID +
Sbjct: 143 GDLNVAHTEIDLKNP---------------KSNRRNAGFTDEERGKFTELLQAG-FIDTF 186
Query: 147 RFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYG 206
R L+ ++ + WS + RIDYF+VS EL+DRI A E+ +G
Sbjct: 187 RALYPDRTGAYTW-WSYLRHARETNAGWRIDYFLVSAELRDRIAAAEIHAD------IFG 239
Query: 207 SDHCPVSLEL 216
SDHCPVSL L
Sbjct: 240 SDHCPVSLTL 249
>gi|384046695|ref|YP_005494712.1| exodeoxyribonuclease III [Bacillus megaterium WSH-002]
gi|345444386|gb|AEN89403.1| Exodeoxyribonuclease III [Bacillus megaterium WSH-002]
Length = 253
Score = 105 bits (262), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 69/190 (36%), Positives = 102/190 (53%), Gaps = 26/190 (13%)
Query: 29 EPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWCG 87
E +GR+I EFE Y++N Y PN+ K + + R +W+ + ++ + S K +I CG
Sbjct: 85 EDEGRIITLEFEQCYVVNVYTPNS--KRDLARLEERLQWEDDLLVYLNKLNSRKAVILCG 142
Query: 88 DLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYR 147
DLNV+H EID+ +P+ PN+ G GFTI ER + +L G +D +R
Sbjct: 143 DLNVAHAEIDLRNPK------------PNR---GNSGFTIEERGKMTTLLASG-FLDTFR 186
Query: 148 FLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGS 207
+L+ ++ + WS + R RIDYFIVSE +KD I + H + GS
Sbjct: 187 YLYPNQE-EAYTWWSYMNKVRERNIGWRIDYFIVSERIKDVIQEATIHPHVM------GS 239
Query: 208 DHCPVSLELS 217
DHCPV LEL+
Sbjct: 240 DHCPVMLELN 249
>gi|296090736|ref|NP_001171688.1| DNA-(apurinic or apyrimidinic site) lyase [Gallus gallus]
gi|194722849|dbj|BAG66138.1| APEX nuclease [Gallus gallus]
Length = 300
Score = 105 bits (262), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 62/192 (32%), Positives = 105/192 (54%), Gaps = 26/192 (13%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIW 85
+++ +GRV+ AEF + Y+++ Y PN+G N Q R++WD + F+ + KP++
Sbjct: 133 EHDAEGRVLTAEFPSVYVVSAYVPNSG--RGLNRLQYRQRWDGAFKSFLQRLDAQKPVVL 190
Query: 86 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 145
CGDLNV+H EID+ +P K + PGFT ER FGA+L +G +D+
Sbjct: 191 CGDLNVAHREIDLRNP---------------KSNRRSPGFTQEERDAFGALL-DGGFLDS 234
Query: 146 YRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 205
+R L+ + F W+ + R R+DYF++S L++ + +++ +
Sbjct: 235 FRLLYPDVPNAYTF-WTYMGGARERNVGWRLDYFLLSTRLREALCDSKIRSAAM------ 287
Query: 206 GSDHCPVSLELS 217
GSDHCP++L L+
Sbjct: 288 GSDHCPITLYLA 299
>gi|296880312|ref|ZP_06904277.1| exodeoxyribonuclease III, partial [Clostridium difficile NAP07]
gi|296428755|gb|EFH14637.1| exodeoxyribonuclease III [Clostridium difficile NAP07]
Length = 181
Score = 105 bits (261), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 63/191 (32%), Positives = 102/191 (53%), Gaps = 26/191 (13%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIW 85
+++ +GRVI EFE FY + Y PN+ + E + R +W+ +++ + KP+I
Sbjct: 15 EHDKEGRVITLEFEDFYFVTVYTPNS--QSELKRLEYRTRWEDDFIDYLTKLDNHKPVIV 72
Query: 86 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 145
CGD+NV+H+EID+ +P K + GFT ER++F +L G ID
Sbjct: 73 CGDMNVAHKEIDLKNP---------------KNNMKNAGFTKEEREKFSKLLDSG-FIDT 116
Query: 146 YRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 205
YR+ + +K+ + WS + RIDYF S++L+DR+I+ ++ +
Sbjct: 117 YRYFNPDKEGVYSW-WSYRFNARKNNAGWRIDYFCASKKLEDRLISADIHTEVL------ 169
Query: 206 GSDHCPVSLEL 216
GSDHCPV LE+
Sbjct: 170 GSDHCPVELEI 180
>gi|440801517|gb|ELR22535.1| exodeoxyribonuclease III, putative [Acanthamoeba castellanii str.
Neff]
Length = 317
Score = 105 bits (261), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 66/194 (34%), Positives = 102/194 (52%), Gaps = 27/194 (13%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIW 85
+++ +GRVI EF+ FYL+NTY PN G K E + R++W+K ++ KP++W
Sbjct: 149 EHDGEGRVITTEFDRFYLVNTYIPNAGQKLERLGY--RQEWNKDFLAYLKNLEQTKPVVW 206
Query: 86 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 145
CGDLNV+H +ID+++P K + GFT ER+ FG +L+ G +D
Sbjct: 207 CGDLNVAHHDIDIANP---------------KTNQKTAGFTKEERRDFGQLLESG-FVDT 250
Query: 146 YRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 205
+R H+ D+ WS + + R+DYF+VS KD + C+
Sbjct: 251 FR--HQNPDLQQFTYWSNRFNCRAKNLGWRLDYFVVS---KDFLPECD---KSFVRPNAL 302
Query: 206 GSDHCPVSLELSEA 219
GSDHCP+ L + +A
Sbjct: 303 GSDHCPIGLLVRKA 316
>gi|328782712|ref|XP_623551.2| PREDICTED: recombination repair protein 1 [Apis mellifera]
Length = 346
Score = 105 bits (261), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 66/196 (33%), Positives = 103/196 (52%), Gaps = 26/196 (13%)
Query: 23 LSALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GK 81
L+ +++ +GR+I AE+ FYL+N Y PN G K + +R KW++ + +V K
Sbjct: 175 LNNSEFDNEGRLITAEYLNFYLINVYVPNAGQKLV--TLPKRLKWNEIFKTYVRNLDEKK 232
Query: 82 PLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGR 141
P+I CGD+NV+H+EID+ +P K + GFTI ER L G
Sbjct: 233 PVIICGDMNVAHKEIDLRNP---------------KTNIKNAGFTIEERDGMTDFLATG- 276
Query: 142 LIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIEL 201
+D +R L+ +K D WS + + R+DYF+VSE +KD + C+ +
Sbjct: 277 FVDTFRALYPDK-TDAYTFWSYFANARSKNIGWRLDYFLVSERIKDNV--CD----NVIR 329
Query: 202 EGFYGSDHCPVSLELS 217
+ YGSDHCP+ L ++
Sbjct: 330 DKVYGSDHCPIVLYIN 345
>gi|255655350|ref|ZP_05400759.1| putative exodeoxyribonuclease [Clostridium difficile QCD-23m63]
gi|296451338|ref|ZP_06893076.1| exodeoxyribonuclease III [Clostridium difficile NAP08]
gi|296259754|gb|EFH06611.1| exodeoxyribonuclease III [Clostridium difficile NAP08]
Length = 250
Score = 105 bits (261), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 63/191 (32%), Positives = 102/191 (53%), Gaps = 26/191 (13%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIW 85
+++ +GRVI EFE FY + Y PN+ + E + R +W+ +++ + KP+I
Sbjct: 84 EHDKEGRVITLEFEDFYFVTVYTPNS--QSELKRLEYRTRWEDDFIDYLTKLDNHKPVIV 141
Query: 86 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 145
CGD+NV+H+EID+ +P K + GFT ER++F +L G ID
Sbjct: 142 CGDMNVAHKEIDLKNP---------------KNNMKNAGFTKEEREKFSKLLDSG-FIDT 185
Query: 146 YRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 205
YR+ + +K+ + WS + RIDYF S++L+DR+I+ ++ +
Sbjct: 186 YRYFNPDKEGVYSW-WSYRFNARKNNAGWRIDYFCASKKLEDRLISADIHTEVL------ 238
Query: 206 GSDHCPVSLEL 216
GSDHCPV LE+
Sbjct: 239 GSDHCPVELEI 249
>gi|373858337|ref|ZP_09601074.1| exodeoxyribonuclease III Xth [Bacillus sp. 1NLA3E]
gi|372451804|gb|EHP25278.1| exodeoxyribonuclease III Xth [Bacillus sp. 1NLA3E]
Length = 252
Score = 105 bits (261), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 66/195 (33%), Positives = 101/195 (51%), Gaps = 26/195 (13%)
Query: 23 LSALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGK 81
+ +++ +GR I EFE FYL+N Y PN+ + + R W+ ++EF+ + + K
Sbjct: 80 IGTTEHDSEGRAITLEFEEFYLVNIYTPNS--QRDLARLNYRVAWEDYLREFLQELDTKK 137
Query: 82 PLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGR 141
P+I CGD+NV+H EID+ +P K + GFT ER + +L G
Sbjct: 138 PVILCGDMNVAHHEIDLKNP---------------KSNMKNSGFTPEERGKMTELLNNG- 181
Query: 142 LIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIEL 201
+D +R L+ EK+ + WS + R RIDYF+VSE L++ II ++
Sbjct: 182 FVDTFRHLNPEKE-NVYTWWSYMNKVRERNIGWRIDYFLVSERLRESIIDTQVHS----- 235
Query: 202 EGFYGSDHCPVSLEL 216
GSDHCPV LE+
Sbjct: 236 -DIMGSDHCPVLLEI 249
>gi|260584873|ref|ZP_05852618.1| exodeoxyribonuclease III [Granulicatella elegans ATCC 700633]
gi|260157530|gb|EEW92601.1| exodeoxyribonuclease III [Granulicatella elegans ATCC 700633]
Length = 253
Score = 105 bits (261), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 67/198 (33%), Positives = 103/198 (52%), Gaps = 26/198 (13%)
Query: 20 HFLLSALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS 79
+ L +++ +GRVI AE+ +YL+ Y PN K + R+ W+ F+ +
Sbjct: 80 QYGLGIEEHDQEGRVITAEYADYYLVTVYTPNA--KRDLTRLSYRQVWEDDFLAFIKKLE 137
Query: 80 -GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILK 138
KP+I+CGDLNV+H+EID+++P K + GFT ER++F I++
Sbjct: 138 ETKPVIFCGDLNVAHKEIDLANP---------------KTNTKNAGFTKEEREKFDQIVE 182
Query: 139 EGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHG 198
G L+DA+RF + E + WS + R RIDYF+VSE L RI +++
Sbjct: 183 NG-LVDAFRFRYPEA-VGAYTWWSYMGGARARNIGWRIDYFVVSEVLTSRIQEVKIRAD- 239
Query: 199 IELEGFYGSDHCPVSLEL 216
GSDHCPV +E+
Sbjct: 240 -----VTGSDHCPVEMEI 252
>gi|118375590|ref|XP_001020979.1| exodeoxyribonuclease III family protein [Tetrahymena thermophila]
gi|89302746|gb|EAS00734.1| exodeoxyribonuclease III family protein [Tetrahymena thermophila
SB210]
Length = 396
Score = 105 bits (261), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 73/216 (33%), Positives = 108/216 (50%), Gaps = 35/216 (16%)
Query: 23 LSALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GK 81
+ ++E +GRV+ AEF+ FYL+ Y PN G + + R +DK Q ++ Q K
Sbjct: 205 IDIAEHENEGRVLTAEFDKFYLVVVYVPNAGSELVRLDY-RVNSFDKDFQNYLNQLKLKK 263
Query: 82 PLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGR 141
+I CGDLNV+H+EID+++P K + PGFTI ER F L+ G
Sbjct: 264 NVILCGDLNVAHQEIDIANP---------------KSNRNSPGFTIEERNSFSKFLESG- 307
Query: 142 LIDAYRFLHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIE 200
ID +RFL+ E +S WS + RIDYF+V++E K I + +
Sbjct: 308 WIDTFRFLYPET---IKYSWWSVRTKARESNIGWRIDYFVVNKEFKSSIKDSMINNN--- 361
Query: 201 LEGFYGSDHCPV-------SLELSEASSDSEKREKK 229
YGSDHCPV +++ +E SS+ + K
Sbjct: 362 ---IYGSDHCPVEFILNLDAIQQNETSSNENTQTNK 394
>gi|331002672|ref|ZP_08326187.1| exodeoxyribonuclease [Lachnospiraceae oral taxon 107 str. F0167]
gi|330407085|gb|EGG86589.1| exodeoxyribonuclease [Lachnospiraceae oral taxon 107 str. F0167]
Length = 262
Score = 105 bits (261), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 68/193 (35%), Positives = 105/193 (54%), Gaps = 30/193 (15%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIW 85
+++ +GRVI AE++ FYL+ Y PN+ + R W+ ++VL+ KP+I+
Sbjct: 95 EHDNEGRVITAEYDDFYLITCYTPNS--QRGLTRLDYRMAWEDAFLDYVLKLEEKKPVIF 152
Query: 86 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 145
CGDLNV+H+EID+ +P K + GFT ER + +L G D+
Sbjct: 153 CGDLNVAHKEIDLKNP---------------KTNRKNAGFTDEERGKMDIVLSSG-FADS 196
Query: 146 YRFLHKEKDMDCGFSWSGNPIGKYRGKRM--RIDYFIVSEELKDRIIACEMQGHGIELEG 203
+R L+ +K + +SW + +G R K + RIDYFIVS++LKDRI ++
Sbjct: 197 FRVLYPDK--EGAYSW-WSYMGGARAKNVGWRIDYFIVSDKLKDRIKEAKIHSD------ 247
Query: 204 FYGSDHCPVSLEL 216
GSDHCPV L++
Sbjct: 248 ILGSDHCPVELDI 260
>gi|315652833|ref|ZP_07905807.1| exodeoxyribonuclease III [Lachnoanaerobaculum saburreum DSM 3986]
gi|315485035|gb|EFU75443.1| exodeoxyribonuclease III [Lachnoanaerobaculum saburreum DSM 3986]
Length = 259
Score = 105 bits (261), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 68/193 (35%), Positives = 104/193 (53%), Gaps = 30/193 (15%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIW 85
+++ +GRVI AE++ FYL+ Y PN+ + R W+ ++ L+ KP+I+
Sbjct: 92 EHDNEGRVITAEYDEFYLITCYTPNS--QRGLTRLDYRMTWEDAFLDYALKLEEKKPVIF 149
Query: 86 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 145
CGDLNV+H+EID+ +P K + GFT ER + IL G +D+
Sbjct: 150 CGDLNVAHKEIDLKNP---------------KTNRKNAGFTDEERAKMDIILSSG-FVDS 193
Query: 146 YRFLHKEKDMDCGFSWSGNPIGKYRGKRM--RIDYFIVSEELKDRIIACEMQGHGIELEG 203
+R L+ +K +SW + +G R K + RIDYFIVS +LKDRI ++ +
Sbjct: 194 FRLLYPDK--TDAYSW-WSYMGGARAKNVGWRIDYFIVSAKLKDRIKEAKIHSEVL---- 246
Query: 204 FYGSDHCPVSLEL 216
GSDHCPV L++
Sbjct: 247 --GSDHCPVELDI 257
>gi|363900200|ref|ZP_09326706.1| exodeoxyribonuclease [Oribacterium sp. ACB1]
gi|395209879|ref|ZP_10398907.1| exodeoxyribonuclease III [Oribacterium sp. ACB8]
gi|361957054|gb|EHL10366.1| exodeoxyribonuclease [Oribacterium sp. ACB1]
gi|394704864|gb|EJF12396.1| exodeoxyribonuclease III [Oribacterium sp. ACB8]
Length = 252
Score = 105 bits (261), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 64/195 (32%), Positives = 105/195 (53%), Gaps = 26/195 (13%)
Query: 23 LSALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGK 81
+ +++ +GRVI EF+ +YL+ Y PN+ + E R +++ F+L K
Sbjct: 81 IGITEHDQEGRVITLEFKDYYLITVYVPNS--QNELKRLPYRMEFEDAFLNFILNLEKKK 138
Query: 82 PLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGR 141
P+I+CGDLNV+HEEID+ +P+ LN GF+ ER +F +L G
Sbjct: 139 PVIYCGDLNVAHEEIDLKNPD---TNHLNA------------GFSDEERAKFSRVLSSGY 183
Query: 142 LIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIEL 201
L D++R+ + +K+ + + WS + R RIDYF+VS +LKD++++ +
Sbjct: 184 L-DSFRYFYPDKEEEYSW-WSYRTKARDRNVGWRIDYFVVSVKLKDKLLSASIH------ 235
Query: 202 EGFYGSDHCPVSLEL 216
+ GSDHCPV + L
Sbjct: 236 QEVMGSDHCPVEITL 250
>gi|357059246|ref|ZP_09120090.1| exodeoxyribonuclease III [Selenomonas infelix ATCC 43532]
gi|355372575|gb|EHG19915.1| exodeoxyribonuclease III [Selenomonas infelix ATCC 43532]
Length = 250
Score = 105 bits (261), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 68/192 (35%), Positives = 98/192 (51%), Gaps = 28/192 (14%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIW 85
+++ +GRVI EF YL+ Y PN+ K R W+ + F+L + KP++
Sbjct: 84 EHDHEGRVITMEFADVYLVTVYTPNS--KNALARLDYRMVWEDAFRAFLLDLRAKKPVVV 141
Query: 86 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 145
CGDLNV+H EID+ +P K + GFT ER +F +L G +D
Sbjct: 142 CGDLNVAHTEIDLKNP---------------KSNRRNAGFTDEERGKFTELLNAG-FVDT 185
Query: 146 YRFLHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGF 204
+R L+ D+ ++ WS + RIDYF+VSEEL++RI A E+
Sbjct: 186 FRALY--PDVTGAYTWWSYLRHARETNAGWRIDYFLVSEELRERIAAAEIHAD------V 237
Query: 205 YGSDHCPVSLEL 216
+GSDHCPVSL L
Sbjct: 238 FGSDHCPVSLTL 249
>gi|255280445|ref|ZP_05345000.1| exodeoxyribonuclease III [Bryantella formatexigens DSM 14469]
gi|255268910|gb|EET62115.1| exodeoxyribonuclease III [Marvinbryantia formatexigens DSM 14469]
Length = 253
Score = 104 bits (260), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 66/191 (34%), Positives = 101/191 (52%), Gaps = 26/191 (13%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIW 85
+++ +GRVI EF+T+YL+ Y PN+ + E R W++ ++ KP+I+
Sbjct: 86 EHDQEGRVITLEFDTYYLVTVYTPNS--QNELARLPYRMTWEEAFLAYLKGLEKNKPVIF 143
Query: 86 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 145
CGDLNV+H+EID+ +P K + GFT ER++F IL+ G ID
Sbjct: 144 CGDLNVAHKEIDLKNP---------------KTNRKNAGFTDEEREKFSQILENG-FIDT 187
Query: 146 YRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 205
YR+ + E++ + WS + + RIDYF VSE LKDR++ +
Sbjct: 188 YRYFYPEQEGVYSW-WSYRFRAREKNAGWRIDYFCVSECLKDRLVDARIHTE------IT 240
Query: 206 GSDHCPVSLEL 216
GSDHCPV L++
Sbjct: 241 GSDHCPVELQI 251
>gi|227512799|ref|ZP_03942848.1| exodeoxyribonuclease III [Lactobacillus buchneri ATCC 11577]
gi|227083999|gb|EEI19311.1| exodeoxyribonuclease III [Lactobacillus buchneri ATCC 11577]
Length = 252
Score = 104 bits (260), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 67/193 (34%), Positives = 99/193 (51%), Gaps = 26/193 (13%)
Query: 23 LSALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGK 81
+ A +++ +GR I E+ FYL+ +Y PN+G K + F R WDK ++ Q S K
Sbjct: 80 IQAPEFDHEGRAITLEYPNFYLVTSYVPNSGAKLKRLDF--RMGWDKAFHAYLNQLDSHK 137
Query: 82 PLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGR 141
P+I CGDLNV+H EID+ +P+ + GFT ER+ F +L +G
Sbjct: 138 PVILCGDLNVAHYEIDLKNPQ---------------SNHHNAGFTDEERQSFTKLLDQG- 181
Query: 142 LIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIEL 201
+D +R + +K+ D WS + R RIDYF+ S+ L D I ++ L
Sbjct: 182 FMDTFRHFYPDKE-DIYSWWSYRFHSRDRNAGWRIDYFVTSKRLADHISDSKI------L 234
Query: 202 EGFYGSDHCPVSL 214
+GSDHCPV L
Sbjct: 235 TDIFGSDHCPVEL 247
>gi|449664158|ref|XP_002161039.2| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase-like [Hydra
magnipapillata]
Length = 352
Score = 104 bits (260), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 69/198 (34%), Positives = 108/198 (54%), Gaps = 26/198 (13%)
Query: 21 FLLSALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-S 79
+ L +++ +GR+I AEFE +Y++ TY PN+G K + RR W+ + +V +
Sbjct: 179 YGLGIKEHDSEGRLITAEFEKYYIITTYVPNSGQKLIRLDY--RRIWNTDYKNYVGELKK 236
Query: 80 GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKE 139
KP+I CGD NV+H EID+++P NK + GFT ER F A+L++
Sbjct: 237 KKPVIMCGDFNVAHTEIDIANPN------------SNKRN---AGFTEEERSDFTALLED 281
Query: 140 GRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGI 199
G ID +R L+ EK F W+ + + K R+DYFIV+++++D I C+ +
Sbjct: 282 G-YIDTFRKLNPEKTGAYTF-WTYMMNARSKNKGWRLDYFIVTKDIEDDI--CD----SV 333
Query: 200 ELEGFYGSDHCPVSLELS 217
GSDHCP+ L L+
Sbjct: 334 IRSSVMGSDHCPIVLNLA 351
>gi|373497233|ref|ZP_09587764.1| exodeoxyribonuclease III (xth) [Fusobacterium sp. 12_1B]
gi|404366853|ref|ZP_10972230.1| exodeoxyribonuclease III (xth) [Fusobacterium ulcerans ATCC 49185]
gi|313690462|gb|EFS27297.1| exodeoxyribonuclease III (xth) [Fusobacterium ulcerans ATCC 49185]
gi|371963724|gb|EHO81271.1| exodeoxyribonuclease III (xth) [Fusobacterium sp. 12_1B]
Length = 253
Score = 104 bits (260), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 66/198 (33%), Positives = 103/198 (52%), Gaps = 28/198 (14%)
Query: 23 LSALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-K 81
L +++ +GRVI E++ FY++ Y PN+ +EE R W+ + +V++ K
Sbjct: 80 LGIEEHDKEGRVITLEYDDFYMITVYTPNS--QEELARLSYRMSWEDEFRNYVMKLDKLK 137
Query: 82 PLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGR 141
P+I CGDLNV+H+EID+ +P K + GF+ ER +F +LK G
Sbjct: 138 PVIICGDLNVAHQEIDLKNP---------------KSNRKNAGFSDEERAKFTELLKNG- 181
Query: 142 LIDAYRFLHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIE 200
+D++R + E + +S WS + RIDYF+VSE LKD + E+ +
Sbjct: 182 FVDSFRHFYPE--LTGAYSWWSYRFNARKNNAGWRIDYFVVSERLKDIMEGAEIHNETL- 238
Query: 201 LEGFYGSDHCPVSLELSE 218
GSDHCPV L+L +
Sbjct: 239 -----GSDHCPVVLKLKK 251
>gi|282880102|ref|ZP_06288822.1| exodeoxyribonuclease III [Prevotella timonensis CRIS 5C-B1]
gi|281305975|gb|EFA98015.1| exodeoxyribonuclease III [Prevotella timonensis CRIS 5C-B1]
Length = 249
Score = 104 bits (260), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 69/196 (35%), Positives = 103/196 (52%), Gaps = 29/196 (14%)
Query: 23 LSALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-K 81
L +++ +GRVI E E F+L+ Y PN+ ++E R KW+ + ++ Q K
Sbjct: 80 LGIEEHDQEGRVITLEMEDFFLITVYVPNS--QDELKRLDYRMKWEDDFRAYITQLDQIK 137
Query: 82 PLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGR 141
P+I CGDLNV+HEEID+ +P+ NK + GFT ER + +L G
Sbjct: 138 PVIICGDLNVAHEEIDLKNPK------------TNKRN---AGFTDEERNKMTRLLDNG- 181
Query: 142 LIDAYRFLHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIE 200
ID +R+L+ E+ +S WS + + RIDYF++SE LK+R+ ++
Sbjct: 182 FIDTFRYLYPEQ---ITYSWWSYRFRAREKNAGWRIDYFLISERLKERLHDAKIHTE--- 235
Query: 201 LEGFYGSDHCPVSLEL 216
GSDHCPV LEL
Sbjct: 236 ---IMGSDHCPVELEL 248
>gi|402312986|ref|ZP_10831909.1| exodeoxyribonuclease III [Lachnospiraceae bacterium ICM7]
gi|400367562|gb|EJP20578.1| exodeoxyribonuclease III [Lachnospiraceae bacterium ICM7]
Length = 258
Score = 104 bits (260), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 69/193 (35%), Positives = 103/193 (53%), Gaps = 30/193 (15%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIW 85
+++ +GRVI AE+E FYL+ Y PN+ + R W+ ++L+ KP+I+
Sbjct: 91 EHDNEGRVITAEYEDFYLITCYTPNS--QRGLTRLDYRMTWEDAFLSYILKLEEKKPVIF 148
Query: 86 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 145
CGDLNV+H+EID+ +P K + GFT ER + IL G D+
Sbjct: 149 CGDLNVAHKEIDLKNP---------------KTNRKNAGFTDEERGKMDVILTSG-FCDS 192
Query: 146 YRFLHKEKDMDCGFSWSGNPIGKYRGKRM--RIDYFIVSEELKDRIIACEMQGHGIELEG 203
+R L+ +K +SW + +G R K + RIDYFIVS++LKDRI ++
Sbjct: 193 FRVLYPDK--TDAYSW-WSYMGGARAKNVGWRIDYFIVSDKLKDRIKEAKIHSD------ 243
Query: 204 FYGSDHCPVSLEL 216
GSDHCPV L++
Sbjct: 244 ILGSDHCPVELDI 256
>gi|292670448|ref|ZP_06603874.1| exodeoxyribonuclease III [Selenomonas noxia ATCC 43541]
gi|292647858|gb|EFF65830.1| exodeoxyribonuclease III [Selenomonas noxia ATCC 43541]
Length = 250
Score = 104 bits (260), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 67/191 (35%), Positives = 95/191 (49%), Gaps = 26/191 (13%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIW 85
+++ +GRVI E YL+ Y PN K R W+ + F+L + KP++
Sbjct: 84 EHDNEGRVITMELPDVYLVTVYTPNA--KRALERLDYRMAWEDSFRAFLLDLRAKKPVVV 141
Query: 86 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 145
CGDLNV+H EID+ +P K + GFT ER +FG +L G +D
Sbjct: 142 CGDLNVAHTEIDLKNP---------------KSNRRNAGFTDEERGKFGELLAAG-FVDT 185
Query: 146 YRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 205
+R L+ ++ + WS + RIDYF+VS EL+DRI A E+ +
Sbjct: 186 FRALYPDRTGAYTW-WSYLRHARETNAGWRIDYFLVSAELRDRIAAAEIHSD------IF 238
Query: 206 GSDHCPVSLEL 216
GSDHCPVSL L
Sbjct: 239 GSDHCPVSLTL 249
>gi|404483949|ref|ZP_11019164.1| exodeoxyribonuclease III (xth) [Clostridiales bacterium OBRC5-5]
gi|404342961|gb|EJZ69330.1| exodeoxyribonuclease III (xth) [Clostridiales bacterium OBRC5-5]
Length = 276
Score = 104 bits (260), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 69/193 (35%), Positives = 103/193 (53%), Gaps = 30/193 (15%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIW 85
+++ +GRVI AE+E FYL+ Y PN+ + R W+ ++L+ KP+I+
Sbjct: 109 EHDNEGRVITAEYEDFYLITCYTPNS--QRGLTRLDYRMTWEDAFLSYILKLEEKKPVIF 166
Query: 86 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 145
CGDLNV+H+EID+ +P K + GFT ER + IL G D+
Sbjct: 167 CGDLNVAHKEIDLKNP---------------KTNRKNAGFTDEERGKMDVILTSG-FCDS 210
Query: 146 YRFLHKEKDMDCGFSWSGNPIGKYRGKRM--RIDYFIVSEELKDRIIACEMQGHGIELEG 203
+R L+ +K +SW + +G R K + RIDYFIVS++LKDRI ++
Sbjct: 211 FRVLYPDK--TDAYSW-WSYMGGARAKNVGWRIDYFIVSDKLKDRIKEAKIHSD------ 261
Query: 204 FYGSDHCPVSLEL 216
GSDHCPV L++
Sbjct: 262 ILGSDHCPVELDI 274
>gi|160879133|ref|YP_001558101.1| exodeoxyribonuclease III [Clostridium phytofermentans ISDg]
gi|160427799|gb|ABX41362.1| exodeoxyribonuclease III [Clostridium phytofermentans ISDg]
Length = 250
Score = 104 bits (260), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 61/191 (31%), Positives = 103/191 (53%), Gaps = 26/191 (13%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIW 85
+++ +GRVI EFE FY++ Y PN+ + E R +W+ + F+ + KP++
Sbjct: 84 EHDKEGRVITLEFEDFYMVTVYTPNS--QNELARLSYRMEWEDEFRRFLKKLEETKPVVV 141
Query: 86 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 145
CGDLNV+H+EID+ +P ++N GFTI ER +F +L+ G ID
Sbjct: 142 CGDLNVAHKEIDLKNPN---TNQMNA------------GFTIEERTKFSELLEAG-FIDT 185
Query: 146 YRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 205
+R+ + + MD WS + + RIDYF+ S+ L+ ++++ ++ +
Sbjct: 186 FRYFYPDA-MDMYSWWSYRFKAREKNTGWRIDYFLASQGLESKLVSAKIHSQIL------ 238
Query: 206 GSDHCPVSLEL 216
GSDHCP+ LE+
Sbjct: 239 GSDHCPIELEI 249
>gi|442804155|ref|YP_007372304.1| exodeoxyribonuclease III [Clostridium stercorarium subsp.
stercorarium DSM 8532]
gi|442740005|gb|AGC67694.1| exodeoxyribonuclease III [Clostridium stercorarium subsp.
stercorarium DSM 8532]
Length = 251
Score = 104 bits (260), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 65/191 (34%), Positives = 104/191 (54%), Gaps = 26/191 (13%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIW 85
+++ +GRV+ AE++ FYL+ Y PN+ + R KW+ +E++ + + KP+I
Sbjct: 84 EHDNEGRVLTAEYDKFYLVTVYTPNS--QRGLTRLDYRMKWEDDFREYLKRLDTTKPVII 141
Query: 86 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 145
CGDLNV+H EID+ +PE A + N GFT ER++ +++ G D+
Sbjct: 142 CGDLNVAHREIDIKNPE---ANRRNA------------GFTDEEREKMTMLIQSG-FTDS 185
Query: 146 YRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 205
+R+L+ +K D WS + + RIDYF+VS+ ++D+I M Y
Sbjct: 186 FRYLYPDK-TDAYTWWSYMFNAREKNIGWRIDYFLVSDRIRDKIRDAGMYSE------IY 238
Query: 206 GSDHCPVSLEL 216
GSDHCPV LE+
Sbjct: 239 GSDHCPVFLEI 249
>gi|423082270|ref|ZP_17070862.1| exodeoxyribonuclease III [Clostridium difficile 002-P50-2011]
gi|423087662|ref|ZP_17076048.1| exodeoxyribonuclease III [Clostridium difficile 050-P50-2011]
gi|357543976|gb|EHJ25982.1| exodeoxyribonuclease III [Clostridium difficile 050-P50-2011]
gi|357548596|gb|EHJ30456.1| exodeoxyribonuclease III [Clostridium difficile 002-P50-2011]
Length = 250
Score = 104 bits (260), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 62/191 (32%), Positives = 102/191 (53%), Gaps = 26/191 (13%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIW 85
+++ +GRVI EFE FY + Y PN+ + E + R +W+ +++ + KP+I
Sbjct: 84 EHDKEGRVITLEFEDFYFVTVYTPNS--QSELKRLEYRTRWEDDFIDYLTKLDNHKPVIV 141
Query: 86 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 145
CGD+NV+H+EID+ +P K + GFT ER++F +L G ID
Sbjct: 142 CGDMNVAHKEIDLKNP---------------KNNMKNAGFTKEEREKFSKLLDSG-FIDT 185
Query: 146 YRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 205
YR+ + +K+ + WS + RIDYF S++L+DR+++ ++ +
Sbjct: 186 YRYFNPDKEGVYSW-WSYRFNARKNNAGWRIDYFCASKKLEDRLVSADIHTEVL------ 238
Query: 206 GSDHCPVSLEL 216
GSDHCPV LE+
Sbjct: 239 GSDHCPVELEI 249
>gi|334319618|ref|XP_001379263.2| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase-like
[Monodelphis domestica]
Length = 320
Score = 104 bits (260), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 65/192 (33%), Positives = 106/192 (55%), Gaps = 25/192 (13%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIW 85
+++ +GRVI+AEFE F L+ Y PN G + R++WD+ ++F+ S K PL+
Sbjct: 152 EHDQEGRVIVAEFEAFVLVTAYVPNAG--RGLVRLEYRQRWDEAFRKFLKGLSAKKPLVL 209
Query: 86 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 145
CGDLNV+HEEID+ +P+ NK++ GFT ER+ FG +L+ L D+
Sbjct: 210 CGDLNVAHEEIDLRNPKG------------NKKN---AGFTPQERQGFGELLQAVPLTDS 254
Query: 146 YRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 205
+R L+ E F W+ + + R+DYF++S+ L + +++ +
Sbjct: 255 FRHLYPEAAYAYTF-WTYMMNARAKNVGWRLDYFLLSQALLPALCDSKIRSKAL------ 307
Query: 206 GSDHCPVSLELS 217
GSDHCP++L L+
Sbjct: 308 GSDHCPITLLLA 319
>gi|15893514|ref|NP_346863.1| exodeoxyribonuclease (exoA) [Clostridium acetobutylicum ATCC 824]
gi|337735433|ref|YP_004634880.1| exodeoxyribonuclease ExoA [Clostridium acetobutylicum DSM 1731]
gi|384456943|ref|YP_005669363.1| Exodeoxyribonuclease (exoA) [Clostridium acetobutylicum EA 2018]
gi|15023055|gb|AAK78203.1|AE007535_5 Exodeoxyribonuclease (exoA) [Clostridium acetobutylicum ATCC 824]
gi|325507632|gb|ADZ19268.1| Exodeoxyribonuclease (exoA) [Clostridium acetobutylicum EA 2018]
gi|336292303|gb|AEI33437.1| exodeoxyribonuclease (exoA) [Clostridium acetobutylicum DSM 1731]
Length = 250
Score = 104 bits (260), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 63/197 (31%), Positives = 104/197 (52%), Gaps = 26/197 (13%)
Query: 19 FHFLLSALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC 78
+ + ++ K++ +GRVI EFE FY++ Y PN+ KE+ + R +W+ + ++
Sbjct: 76 YSYGINEEKHDKEGRVITLEFEDFYMVTVYTPNS--KEKLARLEYRMEWEDSFRNYLKAL 133
Query: 79 S-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAIL 137
KP+I CGD+NV+H EID+ +P K + GF+ ER +F +L
Sbjct: 134 DEKKPVIVCGDMNVAHTEIDLKNP---------------KTNTKNAGFSPEERSKFTELL 178
Query: 138 KEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGH 197
+ G ID YR+ + +K+ + WS + + RIDYF SE LKD++++ ++
Sbjct: 179 EAG-FIDTYRYFYPDKEGIYSW-WSYRFKAREKNAGWRIDYFCTSERLKDKLVSADIHTE 236
Query: 198 GIELEGFYGSDHCPVSL 214
+ GSDHCPV L
Sbjct: 237 VM------GSDHCPVEL 247
>gi|347549181|ref|YP_004855509.1| putative 3'-exo-deoxyribonuclease exoA [Listeria ivanovii subsp.
ivanovii PAM 55]
gi|346982252|emb|CBW86246.1| Putative 3'-exo-deoxyribonuclease exoA [Listeria ivanovii subsp.
ivanovii PAM 55]
Length = 251
Score = 104 bits (259), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 65/197 (32%), Positives = 104/197 (52%), Gaps = 28/197 (14%)
Query: 23 LSALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GK 81
L +++ +GRVI EFE F+++ Y PN+ + E R ++ I +V + K
Sbjct: 80 LDIPEHDTEGRVITLEFEKFFMITVYTPNS--QAELKRLDYRMTFEDAILTYVKKLDETK 137
Query: 82 PLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGR 141
P++ CGDLNV+HEEID+ +P K + GF+ ER +F L+ G
Sbjct: 138 PVVLCGDLNVAHEEIDLKNP---------------KTNRKNAGFSDEERAKFTTFLEAG- 181
Query: 142 LIDAYRFLHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIE 200
+D++R+ + D++ +S WS + + RIDYF+VSE LKD ++ ++ +
Sbjct: 182 FVDSFRYFY--PDLEGAYSWWSYRMNARAQNTGWRIDYFVVSERLKDNLVDAKIHLDVL- 238
Query: 201 LEGFYGSDHCPVSLELS 217
GSDHCPV LEL+
Sbjct: 239 -----GSDHCPVELELN 250
>gi|258645453|ref|ZP_05732922.1| exodeoxyribonuclease III [Dialister invisus DSM 15470]
gi|260402804|gb|EEW96351.1| exodeoxyribonuclease III [Dialister invisus DSM 15470]
Length = 254
Score = 104 bits (259), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 68/191 (35%), Positives = 103/191 (53%), Gaps = 26/191 (13%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIW 85
+++ +GRVI A+F L+ Y PN+ + R KW+ ++++L S K P+I
Sbjct: 87 EHDQEGRVITADFNDHCLVTCYTPNS--QRGLARLTYRMKWEDDFKKYLLDLSKKKPVIL 144
Query: 86 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 145
CGDLNV+HEEID+++P A+ +N GFT ER + +L +G D+
Sbjct: 145 CGDLNVAHEEIDLANP---ASNHMNA------------GFTDDERNKMTELLSDG-FTDS 188
Query: 146 YRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 205
+R+LH++K D WS + R RIDYF+VS+ L+ RI A E+
Sbjct: 189 FRYLHQDKK-DAYSWWSYFAKSRERNIGWRIDYFLVSDILQPRIKAAEIHS------SIL 241
Query: 206 GSDHCPVSLEL 216
GSDHCPV L++
Sbjct: 242 GSDHCPVELDI 252
>gi|340352974|ref|ZP_08675807.1| exodeoxyribonuclease III [Prevotella pallens ATCC 700821]
gi|339611994|gb|EGQ16810.1| exodeoxyribonuclease III [Prevotella pallens ATCC 700821]
Length = 250
Score = 104 bits (259), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 67/200 (33%), Positives = 104/200 (52%), Gaps = 29/200 (14%)
Query: 20 HFLLSALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS 79
H+ L +++ +GRVI E ETF+L+ Y PN+ ++ R KW+ Q ++ Q
Sbjct: 77 HYGLDIDEHDHEGRVITLEMETFFLVTCYTPNS--QDGLKRLDYRMKWEDDFQAYIKQLD 134
Query: 80 GK-PLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILK 138
K P++ CGDLNV+HEEID+ +P K + GFT ER + L
Sbjct: 135 KKKPVVICGDLNVAHEEIDLKNP---------------KTNRKNAGFTDEERAKMTQFLN 179
Query: 139 EGRLIDAYRFLHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGH 197
G ID++R L+ E+ +S WS + + RIDYF++S L++++I ++
Sbjct: 180 NG-FIDSFRTLYPEQ---ITYSWWSYRFKAREKNAGWRIDYFLLSNRLRNQLIDAKIHTE 235
Query: 198 GIELEGFYGSDHCPVSLELS 217
YGSDHCPV +EL+
Sbjct: 236 ------VYGSDHCPVEVELN 249
>gi|260682949|ref|YP_003214234.1| exodeoxyribonuclease [Clostridium difficile CD196]
gi|260686547|ref|YP_003217680.1| exodeoxyribonuclease [Clostridium difficile R20291]
gi|260209112|emb|CBA62286.1| putative exodeoxyribonuclease [Clostridium difficile CD196]
gi|260212563|emb|CBE03542.1| putative exodeoxyribonuclease [Clostridium difficile R20291]
Length = 255
Score = 104 bits (259), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 62/191 (32%), Positives = 102/191 (53%), Gaps = 26/191 (13%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIW 85
+++ +GRVI EFE FY + Y PN+ + E + R +W+ +++ + KP+I
Sbjct: 89 EHDKEGRVITLEFEDFYFVTVYTPNS--QSELKRLEYRTRWEDDFIDYLTKLDNHKPVIV 146
Query: 86 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 145
CGD+NV+H+EID+ +P K + GFT ER++F +L G ID
Sbjct: 147 CGDMNVAHKEIDLKNP---------------KNNMKNAGFTKEEREKFSKLLDSG-FIDT 190
Query: 146 YRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 205
YR+ + +K+ + WS + RIDYF S++L+DR+++ ++ +
Sbjct: 191 YRYFNPDKEGVYSW-WSYRFNARKNNAGWRIDYFCASKKLEDRLVSADIHTEIL------ 243
Query: 206 GSDHCPVSLEL 216
GSDHCPV LE+
Sbjct: 244 GSDHCPVELEI 254
>gi|126698940|ref|YP_001087837.1| exodeoxyribonuclease [Clostridium difficile 630]
gi|254974886|ref|ZP_05271358.1| putative exodeoxyribonuclease [Clostridium difficile QCD-66c26]
gi|255092273|ref|ZP_05321751.1| putative exodeoxyribonuclease [Clostridium difficile CIP 107932]
gi|255100359|ref|ZP_05329336.1| putative exodeoxyribonuclease [Clostridium difficile QCD-63q42]
gi|255306301|ref|ZP_05350472.1| putative exodeoxyribonuclease [Clostridium difficile ATCC 43255]
gi|255314013|ref|ZP_05355596.1| putative exodeoxyribonuclease [Clostridium difficile QCD-76w55]
gi|255516693|ref|ZP_05384369.1| putative exodeoxyribonuclease [Clostridium difficile QCD-97b34]
gi|255649791|ref|ZP_05396693.1| putative exodeoxyribonuclease [Clostridium difficile QCD-37x79]
gi|306519893|ref|ZP_07406240.1| putative exodeoxyribonuclease [Clostridium difficile QCD-32g58]
gi|384360536|ref|YP_006198388.1| exodeoxyribonuclease III [Clostridium difficile BI1]
gi|423090927|ref|ZP_17079213.1| exodeoxyribonuclease III [Clostridium difficile 70-100-2010]
gi|115250377|emb|CAJ68199.1| Exodeoxyribonuclease [Clostridium difficile 630]
gi|357556042|gb|EHJ37664.1| exodeoxyribonuclease III [Clostridium difficile 70-100-2010]
Length = 250
Score = 104 bits (259), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 62/191 (32%), Positives = 102/191 (53%), Gaps = 26/191 (13%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIW 85
+++ +GRVI EFE FY + Y PN+ + E + R +W+ +++ + KP+I
Sbjct: 84 EHDKEGRVITLEFEDFYFVTVYTPNS--QSELKRLEYRTRWEDDFIDYLTKLDNHKPVIV 141
Query: 86 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 145
CGD+NV+H+EID+ +P K + GFT ER++F +L G ID
Sbjct: 142 CGDMNVAHKEIDLKNP---------------KNNMKNAGFTKEEREKFSKLLDSG-FIDT 185
Query: 146 YRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 205
YR+ + +K+ + WS + RIDYF S++L+DR+++ ++ +
Sbjct: 186 YRYFNPDKEGVYSW-WSYRFNARKNNAGWRIDYFCASKKLEDRLVSADIHTEIL------ 238
Query: 206 GSDHCPVSLEL 216
GSDHCPV LE+
Sbjct: 239 GSDHCPVELEI 249
>gi|383862977|ref|XP_003706959.1| PREDICTED: recombination repair protein 1-like [Megachile
rotundata]
Length = 336
Score = 103 bits (258), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 64/197 (32%), Positives = 104/197 (52%), Gaps = 26/197 (13%)
Query: 19 FHFLLSALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC 78
+ L +++ +GR+I AE+ FY LN Y PN G K + +R +W++ + +V Q
Sbjct: 161 IQYGLKNSEFDDEGRLITAEYPNFYFLNVYVPNAGQKLV--TLPKRLQWNEAFKSYVKQL 218
Query: 79 S-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAIL 137
KP+I CGD+NV+H+EID+++P K + GFT ER+ L
Sbjct: 219 DEKKPVIICGDMNVAHQEIDLTNP---------------KTNTKNAGFTKEEREGMTDFL 263
Query: 138 KEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGH 197
G +D +R L+ +K F WS + + R+DYF+VSE++K+++ C+
Sbjct: 264 AAG-FVDTFRSLYPDKTGAYTF-WSYFANARSKNIGWRLDYFLVSEKIKNKV--CD---- 315
Query: 198 GIELEGFYGSDHCPVSL 214
+ + YGSDHCP+ L
Sbjct: 316 NVIRDKIYGSDHCPIVL 332
>gi|269123555|ref|YP_003306132.1| exodeoxyribonuclease III Xth [Streptobacillus moniliformis DSM
12112]
gi|268314881|gb|ACZ01255.1| exodeoxyribonuclease III Xth [Streptobacillus moniliformis DSM
12112]
Length = 251
Score = 103 bits (258), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 65/192 (33%), Positives = 99/192 (51%), Gaps = 26/192 (13%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIW 85
+++ +GRVI AEFE +Y + Y PN+ K E R W+ + ++ + KP+I
Sbjct: 85 EHDKEGRVITAEFEDYYFVTVYTPNS--KNELERLDYRMIWEDEFRSYLKKLEEKKPVIV 142
Query: 86 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 145
CGDLNV+H+EID+ +P K + GFTI ER +F +++ G ID
Sbjct: 143 CGDLNVAHKEIDLKNP---------------KSNTRSAGFTIEERNKFTELIENG-FIDT 186
Query: 146 YRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 205
+R+ + +K + WS + RIDYF VS LKDR++ E+ +
Sbjct: 187 FRYFYPDKIHAYSW-WSYRGNARKNNTGWRIDYFCVSSSLKDRLVDAEIH------DKVE 239
Query: 206 GSDHCPVSLELS 217
GSDHCPV L ++
Sbjct: 240 GSDHCPVVLYIN 251
>gi|383810829|ref|ZP_09966315.1| exodeoxyribonuclease III [Prevotella sp. oral taxon 306 str. F0472]
gi|383356543|gb|EID34041.1| exodeoxyribonuclease III [Prevotella sp. oral taxon 306 str. F0472]
Length = 249
Score = 103 bits (258), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 63/192 (32%), Positives = 104/192 (54%), Gaps = 29/192 (15%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIW 85
+++ +GRVI E + FYL+ Y PN+ ++E + R KW++ Q ++ + KP+I
Sbjct: 84 EHDHEGRVITLEMDDFYLVTVYTPNS--QDELRRLEYRMKWEEDFQSYLHKLDETKPVIV 141
Query: 86 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 145
CGD+NV+H+EID+ +P K + GFT ER++ +L G ID
Sbjct: 142 CGDMNVAHQEIDLKNP---------------KTNRRNAGFTDEEREKMTELLNNG-FIDT 185
Query: 146 YRFLHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGF 204
+R L+ E+ +S WS + + RIDYF++SE L+DR+I ++ +
Sbjct: 186 FRTLYPEQ---VTYSWWSYRFRAREKNTGWRIDYFLISERLRDRLIDAKIHTETM----- 237
Query: 205 YGSDHCPVSLEL 216
GSDHCP+ ++L
Sbjct: 238 -GSDHCPIEIDL 248
>gi|145529087|ref|XP_001450332.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124417943|emb|CAK82935.1| unnamed protein product [Paramecium tetraurelia]
Length = 348
Score = 103 bits (258), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 68/191 (35%), Positives = 105/191 (54%), Gaps = 26/191 (13%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIW 85
K++ +GR + AEFE FYL++ Y PN+G K E + R ++WD Q ++ KP I
Sbjct: 178 KHDQEGRTLTAEFEQFYLVSCYVPNSGQKLERLDY-RTKEWDIDFQNYLEGLRKKKPTIL 236
Query: 86 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 145
CGDLNV+H EID+S+P NK+ GFT+ ER +F L++G +D+
Sbjct: 237 CGDLNVAHHEIDLSNP------------AGNKK---TAGFTLQERDQFSNYLQKG-WVDS 280
Query: 146 YRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 205
+R LH ++ FS N + +G R+DYFI+++E D I ++ + +E
Sbjct: 281 FRHLHPKEVKYSFFSARSNSRSQNKG--WRLDYFIINKEASDAITVSDI---NLTVE--- 332
Query: 206 GSDHCPVSLEL 216
GSDH P+ E+
Sbjct: 333 GSDHVPIECEV 343
>gi|403340594|gb|EJY69586.1| Exodeoxyribonuclease III family protein [Oxytricha trifallax]
Length = 437
Score = 103 bits (258), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 64/192 (33%), Positives = 100/192 (52%), Gaps = 28/192 (14%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC---SGKPL 83
K++ +GR++ A+F+ F L+ TY PN G + R +WD+ ++ +GKP+
Sbjct: 191 KHDKEGRMVNAQFDKFNLVATYIPNAGVMGLDRLGYRVNEWDRDFHTYLKNTEVTTGKPV 250
Query: 84 IWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLI 143
IWCGDLNV++E ID+ Y P KE G+TI ER F A LK+ I
Sbjct: 251 IWCGDLNVANEPIDI-------------YNPKGKEK--SAGYTIQERNSFKAFLKDRAFI 295
Query: 144 DAYRFLHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELE 202
D YR L+ +S W+ + + + R+DYF+VS+ + ++ E+
Sbjct: 296 DTYRHLNPH---SVKYSYWNLRSGARDKDQGWRLDYFVVSDFMMPSVLTSEINNE----- 347
Query: 203 GFYGSDHCPVSL 214
++GSDHCP+SL
Sbjct: 348 -YHGSDHCPLSL 358
>gi|294499447|ref|YP_003563147.1| exodeoxyribonuclease III [Bacillus megaterium QM B1551]
gi|294349384|gb|ADE69713.1| exodeoxyribonuclease III [Bacillus megaterium QM B1551]
Length = 253
Score = 103 bits (257), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 68/192 (35%), Positives = 106/192 (55%), Gaps = 30/192 (15%)
Query: 29 EPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWCG 87
E +GR+I EFE Y++N Y PN+ K + + R +W+ + ++ + S K +I CG
Sbjct: 85 EDEGRIITLEFEQCYVVNVYTPNS--KRDLARLEERLQWEDDLLVYLKKLNSRKAVILCG 142
Query: 88 DLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYR 147
DLNV+H EID+ +P+ PN+ G GFTI ER + +L G +D +R
Sbjct: 143 DLNVAHAEIDLRNPK------------PNR---GNSGFTIEERGKMTTLLASG-FLDTFR 186
Query: 148 FLHKEKDMDCGFSWSGNPIGKYRGKRM--RIDYFIVSEELKDRIIACEMQGHGIELEGFY 205
+L+ + + ++W + + K R + + RIDYFIVSE +K+ I + H +
Sbjct: 187 YLY--PNQEGAYTW-WSYMNKVRERNIGWRIDYFIVSERMKNVIQESAIHPHVM------ 237
Query: 206 GSDHCPVSLELS 217
GSDHCPV LEL+
Sbjct: 238 GSDHCPVMLELN 249
>gi|374308939|ref|YP_005055370.1| exodeoxyribonuclease III [Filifactor alocis ATCC 35896]
gi|291165919|gb|EFE27966.1| exodeoxyribonuclease III [Filifactor alocis ATCC 35896]
Length = 251
Score = 103 bits (257), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 65/196 (33%), Positives = 102/196 (52%), Gaps = 28/196 (14%)
Query: 23 LSALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GK 81
L +++ +GRVI EF+ FY++ Y PN+ K E R W+ + ++L+ + K
Sbjct: 80 LGIEEHDQEGRVITLEFDNFYMVTVYTPNS--KNELLRLDYRMVWEDEFRSYLLRLNETK 137
Query: 82 PLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGR 141
P+I CGDLNV+H+EID+ +P K + GFTI ER + +L G
Sbjct: 138 PVIVCGDLNVAHQEIDLKNP---------------KTNQKNAGFTIEERTKMSTLLDSG- 181
Query: 142 LIDAYRFLHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIE 200
ID +RF + E ++ +S WS + RIDYF+ S+ELK+ + ++ +
Sbjct: 182 FIDTFRFFYPE--LEGAYSWWSYRFNARKNNAGWRIDYFLTSQELKENLKDAKIHSDIL- 238
Query: 201 LEGFYGSDHCPVSLEL 216
GSDHCPV L++
Sbjct: 239 -----GSDHCPVELDI 249
>gi|291222020|ref|XP_002731016.1| PREDICTED: predicted protein-like [Saccoglossus kowalevskii]
Length = 338
Score = 103 bits (257), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 71/190 (37%), Positives = 109/190 (57%), Gaps = 28/190 (14%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIW 85
K++ +GR I AE+E FY ++TY PN G + S+ R++WDK +E++ + KP+IW
Sbjct: 171 KHDKEGRCITAEYEKFYFISTYIPNAGKGLKRLSY--RQEWDKDFREYMKKLDEKKPIIW 228
Query: 86 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 145
CGDLNV+H+EID+++P+ NK+ GF+ ER+ F L+ G L+D+
Sbjct: 229 CGDLNVAHQEIDLTNPK------------TNKK---TAGFSKEEREGFTKHLEIG-LVDS 272
Query: 146 YRFLHKEKDMDCGF-SWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGF 204
YR L+ EK + F ++ N GK G R+DYF++S+ R++ C I
Sbjct: 273 YRHLNPEKTGEWSFWTYMMNARGKNIG--WRLDYFVLSK----RLLPCLCD--SIIRSQV 324
Query: 205 YGSDHCPVSL 214
YGSDH P+ L
Sbjct: 325 YGSDHAPIVL 334
>gi|166030570|ref|ZP_02233399.1| hypothetical protein DORFOR_00233 [Dorea formicigenerans ATCC
27755]
gi|346308967|ref|ZP_08851071.1| exodeoxyribonuclease [Dorea formicigenerans 4_6_53AFAA]
gi|166029572|gb|EDR48329.1| exodeoxyribonuclease III [Dorea formicigenerans ATCC 27755]
gi|345901516|gb|EGX71315.1| exodeoxyribonuclease [Dorea formicigenerans 4_6_53AFAA]
Length = 250
Score = 103 bits (257), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 66/195 (33%), Positives = 100/195 (51%), Gaps = 26/195 (13%)
Query: 23 LSALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GK 81
L +++ +GRVI EFE FY + Y PN+ + E R KW++ ++ + K
Sbjct: 80 LGIEEHDQEGRVITLEFEDFYFITVYTPNS--QSELARLDYRMKWEEDFLTYLKKLEETK 137
Query: 82 PLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGR 141
P+I+CGDLNV+H EID+ +P K + GFT ER++F +L G
Sbjct: 138 PVIFCGDLNVAHTEIDLKNP---------------KTNRKNAGFTDEERQKFTELLNAG- 181
Query: 142 LIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIEL 201
+D +R+ + E+ + WS + + RIDYF VSE LKDR+ ++ L
Sbjct: 182 FVDTFRYFYPEQTGIYSW-WSYRFSARAKNAGWRIDYFCVSESLKDRLEDAKI------L 234
Query: 202 EGFYGSDHCPVSLEL 216
GSDHCPV L++
Sbjct: 235 TDIMGSDHCPVELDI 249
>gi|373493819|ref|ZP_09584429.1| exodeoxyribonuclease [Eubacterium infirmum F0142]
gi|371969524|gb|EHO86969.1| exodeoxyribonuclease [Eubacterium infirmum F0142]
Length = 249
Score = 103 bits (257), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 68/193 (35%), Positives = 100/193 (51%), Gaps = 32/193 (16%)
Query: 28 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGKP-LIWC 86
++ +GR +L E++ FYLLN Y PN + E + R +W+ ++ + + + K ++ C
Sbjct: 83 HDDEGRAVLLEYDKFYLLNVYVPNA--QPELKRLEYRMQWEDDLRAMLSELAKKKHVVMC 140
Query: 87 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 146
GDLNV+HEEID+ +P K + G PGF+ ER + +L G D +
Sbjct: 141 GDLNVAHEEIDLKNP---------------KTNRGNPGFSDEERAKMTELLGAG-FTDTF 184
Query: 147 RFLHKEKDMDCGFSW---SGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEG 203
R L+ E+ + +SW GN G RIDYF+V E LKD+I +
Sbjct: 185 RHLYPEQ--EGAYSWWSYRGNARKNNTG--WRIDYFVVDEGLKDKIKEAAIH------PD 234
Query: 204 FYGSDHCPVSLEL 216
GSDHCPVSLEL
Sbjct: 235 VMGSDHCPVSLEL 247
>gi|340719564|ref|XP_003398220.1| PREDICTED: LOW QUALITY PROTEIN: recombination repair protein 1-like
[Bombus terrestris]
Length = 357
Score = 103 bits (257), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 65/196 (33%), Positives = 106/196 (54%), Gaps = 26/196 (13%)
Query: 23 LSALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GK 81
L ++++ +GR+I AE+ FYL+N Y PN G K + +R KW++ + +V K
Sbjct: 186 LDNVEFDSEGRLITAEYSNFYLINVYVPNAGQKLI--TLPKRLKWNEAFKAYVKNLDEKK 243
Query: 82 PLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGR 141
P+I CGD+NV+H++ID+ +P+ NK++ GFT ER L G
Sbjct: 244 PVIICGDMNVAHQKIDLKNPD------------TNKKN---AGFTQEERSGMTDFLDAG- 287
Query: 142 LIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIEL 201
+D +R L+ K+ F WS + + R+DYF+VSE++KD + C+ +
Sbjct: 288 FVDTFRALYPNKEGAYTF-WSYFANARSKNIGWRLDYFLVSEQIKDNV--CD----NVIR 340
Query: 202 EGFYGSDHCPVSLELS 217
+ YGSDHCP+ L ++
Sbjct: 341 DKVYGSDHCPIVLYIN 356
>gi|187735459|ref|YP_001877571.1| exodeoxyribonuclease III Xth [Akkermansia muciniphila ATCC BAA-835]
gi|187425511|gb|ACD04790.1| exodeoxyribonuclease III Xth [Akkermansia muciniphila ATCC BAA-835]
Length = 253
Score = 103 bits (257), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 69/191 (36%), Positives = 97/191 (50%), Gaps = 26/191 (13%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIW 85
+++ +GRV EFE FYL+N Y PN+ + E R +WD +E+V + KP+++
Sbjct: 86 EHDREGRVCTMEFEGFYLVNCYTPNS--QNELVRLPYREQWDAAFREYVAGLAETKPVVF 143
Query: 86 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 145
CGDLNV+HEEID++ P KE+ GF+ ER F +L+ G D
Sbjct: 144 CGDLNVAHEEIDIARP---------------KENRFSAGFSDQERAGFTLLLEAG-FTDT 187
Query: 146 YRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 205
+R LH E+ + WS + R RIDYF VS L R+ +
Sbjct: 188 FRALHPEEPGWYSW-WSYRAGARARNIGWRIDYFCVSNPLASRVKDAAIH------PDVT 240
Query: 206 GSDHCPVSLEL 216
GSDHCPVSLE+
Sbjct: 241 GSDHCPVSLEI 251
>gi|423669305|ref|ZP_17644334.1| exodeoxyribonuclease [Bacillus cereus VDM034]
gi|423674566|ref|ZP_17649505.1| exodeoxyribonuclease [Bacillus cereus VDM062]
gi|401298432|gb|EJS04032.1| exodeoxyribonuclease [Bacillus cereus VDM034]
gi|401310117|gb|EJS15450.1| exodeoxyribonuclease [Bacillus cereus VDM062]
Length = 252
Score = 103 bits (256), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 63/197 (31%), Positives = 105/197 (53%), Gaps = 28/197 (14%)
Query: 23 LSALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GK 81
L +++ +GRVI EF+ FY++ Y PN+ K R +W+ + ++ + K
Sbjct: 81 LGIEEHDQEGRVITLEFDDFYMITLYTPNS--KRGLERLDYRMEWEDDFRAYIKRLDEKK 138
Query: 82 PLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGR 141
P+I+CGDLNV+H+E+D+ +P K + PGF+ ER++F +L+ G
Sbjct: 139 PVIFCGDLNVAHKEVDLKNP---------------KSNRKNPGFSDEEREKFTCVLEAG- 182
Query: 142 LIDAYRFLHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIE 200
ID YR+L+ D + +S WS + + R+DYF++SE LK +I ++ +
Sbjct: 183 FIDTYRYLY--PDQEGAYSWWSYRMDARAKNIGWRLDYFVISERLKHKITDAKINSEVM- 239
Query: 201 LEGFYGSDHCPVSLELS 217
GSDHCPV L ++
Sbjct: 240 -----GSDHCPVELHIN 251
>gi|313892072|ref|ZP_07825670.1| exodeoxyribonuclease III [Dialister microaerophilus UPII 345-E]
gi|313119524|gb|EFR42718.1| exodeoxyribonuclease III [Dialister microaerophilus UPII 345-E]
Length = 254
Score = 103 bits (256), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 64/189 (33%), Positives = 103/189 (54%), Gaps = 26/189 (13%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIW 85
+++ +GR+I AEFE +L+ Y PN+ + + + R KW+ + ++L+ + KP+I
Sbjct: 87 EHDQEGRLITAEFENHFLVVCYTPNS--QRQLARLEYRMKWENDFKNYLLKLTESKPVIL 144
Query: 86 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 145
CGDLNV+H+EID+++P + GFT ERK+F +L+ G D
Sbjct: 145 CGDLNVAHKEIDLANPS---------------SNHKNAGFTDDERKKFSTLLENG-FTDT 188
Query: 146 YRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 205
+R+L+ +K D WS + R RIDYF+VS++LK++I ++
Sbjct: 189 FRYLYPDKK-DAYSWWSYFAKSRERNIGWRIDYFLVSDKLKNKIKDAKIHPE------IQ 241
Query: 206 GSDHCPVSL 214
GSDHCPV L
Sbjct: 242 GSDHCPVEL 250
>gi|323342310|ref|ZP_08082542.1| exodeoxyribonuclease III [Erysipelothrix rhusiopathiae ATCC 19414]
gi|322463422|gb|EFY08616.1| exodeoxyribonuclease III [Erysipelothrix rhusiopathiae ATCC 19414]
Length = 252
Score = 103 bits (256), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 66/192 (34%), Positives = 106/192 (55%), Gaps = 26/192 (13%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFV-LQCSGKPLIW 85
++ +GRVI E++ F+L+ Y PN+ + E R +W+ +E++ + KP++
Sbjct: 85 EHNTEGRVITCEYDDFFLVCVYTPNS--QPELKRIDYRMQWEDDFREYLKMLDETKPVVL 142
Query: 86 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 145
CGDLNV+H+EID+ +P +A + N PGF+ ER++F +L G ID+
Sbjct: 143 CGDLNVAHKEIDLKNP---SANRKN------------PGFSDQEREQFTNLLDAG-FIDS 186
Query: 146 YRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 205
+R LH +D WS + R RIDYF+VSE L++ I A ++ L+
Sbjct: 187 FRELHPNA-IDRYSWWSYRANARSRNTGWRIDYFVVSERLRNAIEAADI------LDQVL 239
Query: 206 GSDHCPVSLELS 217
GSDHCPV ++L+
Sbjct: 240 GSDHCPVMIKLN 251
>gi|299143331|ref|ZP_07036411.1| exodeoxyribonuclease III [Peptoniphilus sp. oral taxon 386 str.
F0131]
gi|298517816|gb|EFI41555.1| exodeoxyribonuclease III [Peptoniphilus sp. oral taxon 386 str.
F0131]
Length = 250
Score = 103 bits (256), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 65/191 (34%), Positives = 99/191 (51%), Gaps = 26/191 (13%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIW 85
+++ +GRVI AEFE FY + Y PN+ K + R W+ + ++ + KP++
Sbjct: 84 EHDTEGRVITAEFEKFYFVTCYTPNS--KRGLERLEYRMVWEDVFRNYLNKLRETKPVVL 141
Query: 86 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 145
CGDLNV+HEEID+++P + GFT ER +F +LK G ID
Sbjct: 142 CGDLNVAHEEIDLANP---------------ATNHKNAGFTNEERSKFTELLKSG-YIDT 185
Query: 146 YRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 205
+R+ + ++ + + WS + R RIDYF+VSEELK + ++ +
Sbjct: 186 FRYFYPDRKDEYSW-WSNFAKSRERNIGWRIDYFVVSEELKGNLSDAKIH------QSVM 238
Query: 206 GSDHCPVSLEL 216
GSDHCPV L L
Sbjct: 239 GSDHCPVELVL 249
>gi|350410618|ref|XP_003489091.1| PREDICTED: recombination repair protein 1-like [Bombus impatiens]
Length = 334
Score = 103 bits (256), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 65/200 (32%), Positives = 108/200 (54%), Gaps = 26/200 (13%)
Query: 19 FHFLLSALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC 78
+ L ++++ +GR+I AE+ FYL+N Y PN G K + +R KW++ + +V
Sbjct: 159 IKYGLDNVEFDSEGRLITAEYSNFYLVNVYVPNAGQKLI--TLPKRLKWNEAFKAYVKNL 216
Query: 79 S-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAIL 137
KP+I CGD+NV+H++ID+ +P+ NK++ GFT ER L
Sbjct: 217 DEKKPVIICGDMNVAHQKIDLKNPD------------TNKKN---AGFTQEERSGMTDFL 261
Query: 138 KEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGH 197
G +D +R L+ +K+ F WS + + R+DYF+VSE++KD + C+
Sbjct: 262 DAG-FVDTFRALYPDKEGAYTF-WSYFANARSKNIGWRLDYFLVSEQIKDNV--CD---- 313
Query: 198 GIELEGFYGSDHCPVSLELS 217
+ + YGSDHCP+ L ++
Sbjct: 314 NVIRDEVYGSDHCPIVLYIN 333
>gi|342214112|ref|ZP_08706820.1| exodeoxyribonuclease III [Veillonella sp. oral taxon 780 str.
F0422]
gi|341595797|gb|EGS38436.1| exodeoxyribonuclease III [Veillonella sp. oral taxon 780 str.
F0422]
Length = 175
Score = 103 bits (256), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 63/189 (33%), Positives = 99/189 (52%), Gaps = 26/189 (13%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIW 85
+++ +GRVI AE+E FYL+ Y PN+ + E + R +W+ +E++L K P+I
Sbjct: 8 EHDQEGRVITAEYEKFYLVTCYTPNS--QRELARLEYRMEWEVAFREYLLALDAKKPVIL 65
Query: 86 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 145
CGDLNV+H+EID+ +P K + GF+ ER++ +L G D
Sbjct: 66 CGDLNVAHQEIDLKNP---------------KTNRKNAGFSDEEREKMTELLAAG-FTDT 109
Query: 146 YRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 205
+R+L+ + +D WS + R RIDYF+VS + D+I ++ +
Sbjct: 110 FRYLYPDA-VDAYSWWSYMGKARERNVGWRIDYFLVSNSIADKIQEAKIHA------DIF 162
Query: 206 GSDHCPVSL 214
GSDHCPV L
Sbjct: 163 GSDHCPVEL 171
>gi|452823263|gb|EME30275.1| exodeoxyribonuclease III [Galdieria sulphuraria]
Length = 331
Score = 102 bits (255), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 69/199 (34%), Positives = 102/199 (51%), Gaps = 28/199 (14%)
Query: 23 LSALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GK 81
L K+ +GRVI E+E ++L+N Y PN G ++ R W+K + +++ + K
Sbjct: 156 LQEEKHNEEGRVITLEYEKYFLVNAYVPNAGEGLRRLNY-RIDSWEKDMCQYLCGLNQKK 214
Query: 82 PLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGR 141
P+I+ GDLNV+H+EID+ P K GFT ER++F +L+ G
Sbjct: 215 PVIYTGDLNVAHQEIDIYQP---------------KGHEKHAGFTPQERQKFTDLLQCG- 258
Query: 142 LIDAYRFLHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIE 200
+DA+R+L+ + F+ WS K R R+DYF+ SE L I+ CEM
Sbjct: 259 FVDAFRYLYPHRQ---SFTYWSKRAKAKERNHGWRLDYFVTSERLVPCILECEM------ 309
Query: 201 LEGFYGSDHCPVSLELSEA 219
E Y SDHCP+ L L A
Sbjct: 310 FENIYISDHCPLMLHLDIA 328
>gi|289450732|ref|YP_003475042.1| exodeoxyribonuclease III [Clostridiales genomosp. BVAB3 str.
UPII9-5]
gi|289185279|gb|ADC91704.1| exodeoxyribonuclease III [Clostridiales genomosp. BVAB3 str.
UPII9-5]
Length = 251
Score = 102 bits (255), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 70/190 (36%), Positives = 99/190 (52%), Gaps = 26/190 (13%)
Query: 28 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWC 86
++ +GR+I AEF +YL Y PN+ ++ R+ W++ ++ + KP+I C
Sbjct: 86 HDQEGRLITAEFPDYYLCTVYTPNS--QDGLKRLVYRQSWERDFLTYLQELRRVKPVIIC 143
Query: 87 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 146
GDLNV+H EID+ +P AA + N PGFT ER F +L G +D +
Sbjct: 144 GDLNVAHREIDLKNP---AANRKN------------PGFTDEERAEFQTLLDAG-FVDTF 187
Query: 147 RFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYG 206
R+ + EK + + WS + R RIDYF+VS EL DR +Q I E F G
Sbjct: 188 RYFYPEKPEEYSW-WSYRFNARSRNAGWRIDYFLVSNELTDR-----LQSASIHQEIF-G 240
Query: 207 SDHCPVSLEL 216
SDHCPV L L
Sbjct: 241 SDHCPVELIL 250
>gi|423311909|ref|ZP_17289846.1| exodeoxyribonuclease III (xth) [Bacteroides vulgatus CL09T03C04]
gi|392689288|gb|EIY82566.1| exodeoxyribonuclease III (xth) [Bacteroides vulgatus CL09T03C04]
Length = 252
Score = 102 bits (255), Expect = 9e-20, Method: Compositional matrix adjust.
Identities = 64/195 (32%), Positives = 100/195 (51%), Gaps = 26/195 (13%)
Query: 23 LSALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GK 81
L +++ +GRVI E E+FYL+ Y PN+ +EE R KW+ + ++ + K
Sbjct: 81 LGIEEHDHEGRVITLELESFYLITVYTPNS--QEELRRLDYRMKWEDDFRAYLKKLEEKK 138
Query: 82 PLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGR 141
P+I CGDLNV+H+EID+ +P K + GFT ER +F +L+ G
Sbjct: 139 PVIVCGDLNVAHKEIDLKNP---------------KTNRKNAGFTDEERTKFTTLLESG- 182
Query: 142 LIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIEL 201
D +R+ + E++ + WS + + RIDYF+ S+ LKDR+ +
Sbjct: 183 FTDTFRYFYPEQEGIYSW-WSYRFKAREKNSGWRIDYFLTSDSLKDRLKGAHI------Y 235
Query: 202 EGFYGSDHCPVSLEL 216
+GSDHCPV L +
Sbjct: 236 TDIFGSDHCPVELTI 250
>gi|340758618|ref|ZP_08695204.1| exodeoxyribonuclease [Fusobacterium varium ATCC 27725]
gi|251835305|gb|EES63846.1| exodeoxyribonuclease [Fusobacterium varium ATCC 27725]
Length = 253
Score = 102 bits (255), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 67/198 (33%), Positives = 103/198 (52%), Gaps = 28/198 (14%)
Query: 23 LSALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-K 81
L +++ +GRVI E+E FY++ Y PN+ +EE R W+ + +V++ K
Sbjct: 80 LGIEEHDKEGRVITLEYEDFYMITVYTPNS--QEELARLDYRMSWEDEFRNYVMKLDKLK 137
Query: 82 PLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGR 141
P+I CGDLNV+H+EID+ +P K + GF+ ER +F +L+ G
Sbjct: 138 PVIICGDLNVAHKEIDLKNP---------------KSNRKNAGFSDEERAKFTELLENG- 181
Query: 142 LIDAYRFLHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIE 200
ID++R + E + +S WS + RIDYF+VSE LKD + E+ +
Sbjct: 182 FIDSFRHFYPE--VTGAYSWWSYRFNARKNNAGWRIDYFVVSERLKDIMEGAEIHNEIL- 238
Query: 201 LEGFYGSDHCPVSLELSE 218
GSDHCPV L+L +
Sbjct: 239 -----GSDHCPVVLKLKK 251
>gi|154484298|ref|ZP_02026746.1| hypothetical protein EUBVEN_02011 [Eubacterium ventriosum ATCC
27560]
gi|149734775|gb|EDM50692.1| exodeoxyribonuclease III [Eubacterium ventriosum ATCC 27560]
Length = 251
Score = 102 bits (255), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 66/193 (34%), Positives = 105/193 (54%), Gaps = 28/193 (14%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIW 85
+++ +GRVI EFE FY++ Y PN+ + E R +W+ + ++ + KP++
Sbjct: 84 EHDHEGRVITLEFEDFYMVTCYTPNS--QNELKRLDYRMQWEDDFKAYLKKLEESKPVVL 141
Query: 86 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 145
CGDLNV+H+EID+ +P K + GFT ER++ +L +G ID
Sbjct: 142 CGDLNVAHKEIDLKNP---------------KTNRKNAGFTDEEREKMTKLLDDG-FIDT 185
Query: 146 YRFLHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGF 204
+R+ + D++ +S WS + + RIDYFIVSE LKD+ ++G I E
Sbjct: 186 FRYFY--PDLEGKYSWWSYRFKAREKNAGWRIDYFIVSEALKDK-----LEGADIHTE-I 237
Query: 205 YGSDHCPVSLELS 217
GSDHCP+ L+L+
Sbjct: 238 LGSDHCPIELDLN 250
>gi|375086371|ref|ZP_09732783.1| exodeoxyribonuclease III (xth) [Megamonas funiformis YIT 11815]
gi|374565408|gb|EHR36677.1| exodeoxyribonuclease III (xth) [Megamonas funiformis YIT 11815]
Length = 251
Score = 102 bits (255), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 66/195 (33%), Positives = 107/195 (54%), Gaps = 26/195 (13%)
Query: 23 LSALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-K 81
L +++ +GRVI EF+ F+++ Y PN+ K E R +W+ + ++++ + K
Sbjct: 80 LGIEEHDHEGRVITLEFDKFFMVCVYTPNS--KRELERLDYRMQWEDAFRNYLVELNKQK 137
Query: 82 PLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGR 141
P++ CGDLNV+H+EID+ +P K + GFT ER + +L+ G
Sbjct: 138 PVVMCGDLNVAHKEIDLKNP---------------KTNRRSAGFTDEERSKMTELLQAG- 181
Query: 142 LIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIEL 201
+D +R+L+ +K + WS + RIDYFIVS+++++ I + GI
Sbjct: 182 FVDTFRYLYPDKTSIYSW-WSYMRKARENNAGWRIDYFIVSKDIEENI-----KEAGIHN 235
Query: 202 EGFYGSDHCPVSLEL 216
E F+GSDHCPVSLEL
Sbjct: 236 E-FFGSDHCPVSLEL 249
>gi|395502890|ref|XP_003755806.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase isoform 1
[Sarcophilus harrisii]
Length = 321
Score = 102 bits (255), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 64/192 (33%), Positives = 106/192 (55%), Gaps = 25/192 (13%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIW 85
+++ +GRVI+AEFE F L+ Y PN G + R++WD+ ++F+ + K PL+
Sbjct: 153 EHDQEGRVIVAEFEAFVLVTAYVPNAG--RGLVRLEYRQRWDEAFRKFLKGLNAKKPLVL 210
Query: 86 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 145
CGDLNV+HEEID+ +P+ NK++ GFT ER+ FG +L+ L D+
Sbjct: 211 CGDLNVAHEEIDLRNPKG------------NKKN---AGFTPQERQGFGELLQAVPLTDS 255
Query: 146 YRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 205
+R L+ E F W+ + + R+DYF++S+ L + +++ +
Sbjct: 256 FRHLYPEAAYAYTF-WTYMMNARAKNVGWRLDYFLLSQSLLPALCDSKIRSKAL------ 308
Query: 206 GSDHCPVSLELS 217
GSDHCP++L L+
Sbjct: 309 GSDHCPITLLLA 320
>gi|374710435|ref|ZP_09714869.1| apurinic/apyrimidinic endonuclease [Sporolactobacillus inulinus
CASD]
Length = 253
Score = 102 bits (255), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 65/190 (34%), Positives = 100/190 (52%), Gaps = 26/190 (13%)
Query: 28 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 86
++ +GR+I E+E +YL+ Y PN K + R +W +++ + KP+I+C
Sbjct: 86 HDQEGRLITLEYEDYYLVTVYTPNA--KRDLTRLAYRLEWGAAFTDYMKRLDEKKPVIFC 143
Query: 87 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 146
GDLNV+H+ ID+++P K + G GFTI ER+ F A+L G +D++
Sbjct: 144 GDLNVAHQAIDLTYP---------------KNNKGNSGFTIEEREDFTALLNNG-FVDSF 187
Query: 147 RFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYG 206
R L+ E+ D WS + R RIDYF++S+ L I ++ L YG
Sbjct: 188 RHLYPER-TDAYSWWSFLFNARERNIGWRIDYFVLSKCLSSSIRDAKL------LTEIYG 240
Query: 207 SDHCPVSLEL 216
SDHCPV L+L
Sbjct: 241 SDHCPVELDL 250
>gi|302388430|ref|YP_003824252.1| exodeoxyribonuclease III [Clostridium saccharolyticum WM1]
gi|302199058|gb|ADL06629.1| exodeoxyribonuclease III [Clostridium saccharolyticum WM1]
Length = 251
Score = 102 bits (255), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 64/193 (33%), Positives = 103/193 (53%), Gaps = 26/193 (13%)
Query: 23 LSALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GK 81
++A +++ +GRVI AE+ +Y++ Y PN+ + E R W+ + ++ + K
Sbjct: 81 INAEEHDREGRVIAAEYPEYYVVTCYTPNS--QNELARLPYRLTWEDAVLAYLKKLEEKK 138
Query: 82 PLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGR 141
P+I+CGDLNV+H+EID+ +P K + GFT ER++F +L+ G
Sbjct: 139 PVIFCGDLNVAHKEIDLKNP---------------KTNRKNAGFTDEEREKFTVLLESG- 182
Query: 142 LIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIEL 201
ID YR+ + E++ + WS + + RIDYF VSE LKDR+ + + +
Sbjct: 183 FIDTYRYFYPEQEGIYSW-WSYRFSARKKNAGWRIDYFCVSESLKDRLASAAIHTEVL-- 239
Query: 202 EGFYGSDHCPVSL 214
GSDHCPV L
Sbjct: 240 ----GSDHCPVEL 248
>gi|225159347|ref|ZP_03725644.1| DNA-(apurinic or apyrimidinic site) lyase [Diplosphaera
colitermitum TAV2]
gi|224802053|gb|EEG20328.1| DNA-(apurinic or apyrimidinic site) lyase [Diplosphaera
colitermitum TAV2]
Length = 259
Score = 102 bits (255), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 66/192 (34%), Positives = 97/192 (50%), Gaps = 27/192 (14%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIW 85
+++ +GRV+ AEF FYL+N Y PN + E R++WD ++ + KP++
Sbjct: 94 EHDTEGRVLTAEFPDFYLVNAYVPNA--QPELARLPYRQRWDADFLAYLRGLETRKPVVM 151
Query: 86 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 145
CGDLNV+HEEID++ P KE+ G PGF+ ER F L+ G +D
Sbjct: 152 CGDLNVAHEEIDLARP---------------KENVGNPGFSNEERAGFREFLRAG-FLDT 195
Query: 146 YRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 205
+R K +S+ GK G RIDYF+ S L+ R+ ++
Sbjct: 196 FREFEKGPGHYSWWSYRAGARGKNVG--WRIDYFLASASLRPRLKRAWIE------PAVM 247
Query: 206 GSDHCPVSLELS 217
GSDHCP+ LEL+
Sbjct: 248 GSDHCPIGLELA 259
>gi|340751024|ref|ZP_08687853.1| exodeoxyribonuclease [Fusobacterium mortiferum ATCC 9817]
gi|229421274|gb|EEO36321.1| exodeoxyribonuclease [Fusobacterium mortiferum ATCC 9817]
Length = 251
Score = 102 bits (255), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 65/198 (32%), Positives = 106/198 (53%), Gaps = 26/198 (13%)
Query: 20 HFLLSALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS 79
H+ + +++ +GRVI EFE FY++ Y PN+ +E+ R KW++ + ++L+
Sbjct: 77 HYGIGIEEHDKEGRVITLEFEKFYMITVYTPNS--QEKLARLDYRMKWEEDFKNYLLELD 134
Query: 80 GK-PLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILK 138
K P+I CGDLNV+H+EID+ +P K + GF+ ER++ +L+
Sbjct: 135 KKKPVIVCGDLNVAHKEIDLKNP---------------KTNRKNAGFSDEEREKMTKLLE 179
Query: 139 EGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHG 198
G +D++R+ + K D WS + + RIDYF+VS+ +K+ M+G
Sbjct: 180 SG-FVDSFRYFYPNK-TDIYSWWSYRFSARAKNAGWRIDYFLVSDRIKEN-----MKGAE 232
Query: 199 IELEGFYGSDHCPVSLEL 216
I E GSDHCPV L +
Sbjct: 233 IHTE-ILGSDHCPVLLNI 249
>gi|315917146|ref|ZP_07913386.1| exodeoxyribonuclease III [Fusobacterium gonidiaformans ATCC 25563]
gi|313691021|gb|EFS27856.1| exodeoxyribonuclease III [Fusobacterium gonidiaformans ATCC 25563]
Length = 250
Score = 102 bits (255), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 66/195 (33%), Positives = 102/195 (52%), Gaps = 26/195 (13%)
Query: 23 LSALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GK 81
L +++ +GRVI EFE FY++ Y PN+ K E R W+ + ++ + + K
Sbjct: 80 LGIEEHDQEGRVITLEFEDFYMVTVYTPNS--KNELERLDYRMVWEDEFRSYLAKLNEAK 137
Query: 82 PLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGR 141
P++ CGD+NV+HEEID+ +P K + GFT ER +F +LK G
Sbjct: 138 PVVVCGDMNVAHEEIDLKNP---------------KTNRRNAGFTDEERSKFTELLKAG- 181
Query: 142 LIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIEL 201
D++R+L+ ++ + WS + RIDYF+VS + K++I E+ E
Sbjct: 182 FTDSFRYLYPDR-LHAYSWWSYRANARKNNTGWRIDYFVVSNDWKEQIQEAEIHA---EQ 237
Query: 202 EGFYGSDHCPVSLEL 216
E GSDHCPV+L L
Sbjct: 238 E---GSDHCPVALYL 249
>gi|395502892|ref|XP_003755807.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase isoform 2
[Sarcophilus harrisii]
Length = 320
Score = 102 bits (255), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 64/192 (33%), Positives = 106/192 (55%), Gaps = 25/192 (13%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIW 85
+++ +GRVI+AEFE F L+ Y PN G + R++WD+ ++F+ + K PL+
Sbjct: 152 EHDQEGRVIVAEFEAFVLVTAYVPNAG--RGLVRLEYRQRWDEAFRKFLKGLNAKKPLVL 209
Query: 86 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 145
CGDLNV+HEEID+ +P+ NK++ GFT ER+ FG +L+ L D+
Sbjct: 210 CGDLNVAHEEIDLRNPKG------------NKKN---AGFTPQERQGFGELLQAVPLTDS 254
Query: 146 YRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 205
+R L+ E F W+ + + R+DYF++S+ L + +++ +
Sbjct: 255 FRHLYPEAAYAYTF-WTYMMNARAKNVGWRLDYFLLSQSLLPALCDSKIRSKAL------ 307
Query: 206 GSDHCPVSLELS 217
GSDHCP++L L+
Sbjct: 308 GSDHCPITLLLA 319
>gi|150005146|ref|YP_001299890.1| exodeoxyribonuclease [Bacteroides vulgatus ATCC 8482]
gi|294778957|ref|ZP_06744373.1| exodeoxyribonuclease III [Bacteroides vulgatus PC510]
gi|319642656|ref|ZP_07997302.1| exodeoxyribonuclease [Bacteroides sp. 3_1_40A]
gi|345520248|ref|ZP_08799647.1| exodeoxyribonuclease [Bacteroides sp. 4_3_47FAA]
gi|149933570|gb|ABR40268.1| exodeoxyribonuclease [Bacteroides vulgatus ATCC 8482]
gi|254836074|gb|EET16383.1| exodeoxyribonuclease [Bacteroides sp. 4_3_47FAA]
gi|294447266|gb|EFG15850.1| exodeoxyribonuclease III [Bacteroides vulgatus PC510]
gi|317385744|gb|EFV66677.1| exodeoxyribonuclease [Bacteroides sp. 3_1_40A]
Length = 252
Score = 102 bits (254), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 64/195 (32%), Positives = 100/195 (51%), Gaps = 26/195 (13%)
Query: 23 LSALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GK 81
L +++ +GRVI E E+FYL+ Y PN+ +EE R KW+ + ++ + K
Sbjct: 81 LGIEEHDHEGRVITLELESFYLITVYTPNS--QEELRRLDYRMKWEDDFRAYLKKLEEKK 138
Query: 82 PLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGR 141
P+I CGDLNV+H+EID+ +P K + GFT ER +F +L+ G
Sbjct: 139 PVIVCGDLNVAHKEIDLKNP---------------KTNRKNAGFTDEERAKFTTLLESG- 182
Query: 142 LIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIEL 201
D +R+ + E++ + WS + + RIDYF+ S+ LKDR+ +
Sbjct: 183 FTDTFRYFYPEQEGIYSW-WSYRFKAREKNSGWRIDYFLTSDSLKDRLKGAHI------Y 235
Query: 202 EGFYGSDHCPVSLEL 216
+GSDHCPV L +
Sbjct: 236 TDIFGSDHCPVELTI 250
>gi|363893051|ref|ZP_09320191.1| exodeoxyribonuclease III (xth) [Eubacteriaceae bacterium CM2]
gi|402837946|ref|ZP_10886461.1| exodeoxyribonuclease III [Eubacteriaceae bacterium OBRC8]
gi|361961782|gb|EHL14961.1| exodeoxyribonuclease III (xth) [Eubacteriaceae bacterium CM2]
gi|402274377|gb|EJU23561.1| exodeoxyribonuclease III [Eubacteriaceae bacterium OBRC8]
Length = 251
Score = 102 bits (254), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 62/198 (31%), Positives = 105/198 (53%), Gaps = 26/198 (13%)
Query: 20 HFLLSALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS 79
H+ L +++ +GR+I E+E +Y+ Y PN + E R+KW++ +E+ +
Sbjct: 77 HYGLGIEEHDMEGRLITLEYENYYIATVYTPNA--QPELARLAYRQKWEEDFREYFKKLD 134
Query: 80 -GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILK 138
KP+I CGD+NV+H+EID+ +P K + PGF+ ER++F +L
Sbjct: 135 EKKPVIICGDMNVAHQEIDLKNP---------------KNNRKNPGFSDEEREKFTLLLN 179
Query: 139 EGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHG 198
G ID +R+ + +K + + WS + RIDYF VS+ LK+++ + +
Sbjct: 180 AG-FIDTFRYFYPDKTDEYSW-WSYRFNARKNNAGWRIDYFCVSDRLKEKLKSASIH--- 234
Query: 199 IELEGFYGSDHCPVSLEL 216
+ GSDHCPVS+E+
Sbjct: 235 ---QDVMGSDHCPVSIEI 249
>gi|297824099|ref|XP_002879932.1| apurinic endonuclease-redox protein [Arabidopsis lyrata subsp.
lyrata]
gi|297325771|gb|EFH56191.1| apurinic endonuclease-redox protein [Arabidopsis lyrata subsp.
lyrata]
Length = 550
Score = 102 bits (254), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 70/196 (35%), Positives = 104/196 (53%), Gaps = 27/196 (13%)
Query: 23 LSALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGK 81
LS ++ +GR++ AEF++FYL+NTY PN+G + S+ R +WD+ + + + K
Sbjct: 378 LSGSDHDMEGRIVTAEFDSFYLINTYVPNSGDGLKRLSY-RIEEWDRTLSNHIKELEKSK 436
Query: 82 PLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGR 141
P++ GDLN +HEEID+ +P A K N GFTI ER+ FGA +
Sbjct: 437 PVVLTGDLNCAHEEIDIFNP---AGNKRNA------------GFTIEERQSFGANFLDKG 481
Query: 142 LIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRM-RIDYFIVSEELKDRIIACEMQGHGIE 200
+D +R K+ G+++ G G + R R+DYF+VSE IA + I
Sbjct: 482 FVDTFR---KQHPGVVGYTYWGYRHGGRKTNRGWRLDYFLVSES-----IAANVHDSYI- 532
Query: 201 LEGFYGSDHCPVSLEL 216
L GSDHCP+ L L
Sbjct: 533 LPDINGSDHCPIGLIL 548
>gi|170051904|ref|XP_001861978.1| conserved hypothetical protein [Culex quinquefasciatus]
gi|167872934|gb|EDS36317.1| conserved hypothetical protein [Culex quinquefasciatus]
Length = 340
Score = 102 bits (254), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 66/189 (34%), Positives = 102/189 (53%), Gaps = 28/189 (14%)
Query: 31 DGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIWCGDL 89
DGR++ AE+E FYL+ Y PN G K + +R +WD++ +++ K P+I CGD+
Sbjct: 177 DGRLLTAEYEKFYLVCVYVPNAGRKLV--TLPKRMRWDEKFLQYLRDLDAKKPVILCGDM 234
Query: 90 NVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFL 149
NV+H EID+++P+ NK++ GFT ER +L G +D +R
Sbjct: 235 NVAHAEIDLANPK------------TNKKN---AGFTQEERDGMTNLLSHG-FVDTFRQR 278
Query: 150 HKEKDMDCGF-SWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSD 208
+ E+ F ++ GN K G R+DYFI SE L R++ ++ G YGSD
Sbjct: 279 YPEQKAAYTFWTYMGNARAKNVG--WRLDYFIASERLAGRVVDSVIR------PGVYGSD 330
Query: 209 HCPVSLELS 217
HCP++L L+
Sbjct: 331 HCPITLLLN 339
>gi|336066887|ref|YP_004561745.1| exodeoxyribonuclease III [Erysipelothrix rhusiopathiae str.
Fujisawa]
gi|334296833|dbj|BAK32704.1| exodeoxyribonuclease III [Erysipelothrix rhusiopathiae str.
Fujisawa]
Length = 251
Score = 102 bits (254), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 66/192 (34%), Positives = 106/192 (55%), Gaps = 26/192 (13%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFV-LQCSGKPLIW 85
++ +GRVI E++ F+L+ Y PN+ + E R +W+ +E++ + KP++
Sbjct: 84 EHNTEGRVITCEYDDFFLVCVYTPNS--QPELKRIDYRMQWEDDFREYLKMLDETKPVVL 141
Query: 86 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 145
CGDLNV+H+EID+ +P +A + N PGF+ ER++F +L G ID+
Sbjct: 142 CGDLNVAHKEIDLKNP---SANRKN------------PGFSDQEREQFTNLLDAG-FIDS 185
Query: 146 YRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 205
+R LH +D WS + R RIDYF+VSE L++ I A ++ L+
Sbjct: 186 FRELHPNA-IDRYSWWSYRANARSRNIGWRIDYFVVSERLRNAIEAADI------LDQVL 238
Query: 206 GSDHCPVSLELS 217
GSDHCPV ++L+
Sbjct: 239 GSDHCPVMIKLN 250
>gi|393911285|gb|EFO27125.2| exodeoxyribonuclease III [Loa loa]
Length = 313
Score = 102 bits (254), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 66/194 (34%), Positives = 103/194 (53%), Gaps = 25/194 (12%)
Query: 24 SALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKP 82
S L GR+I+AE+E +YL+N Y PN+G + +R+ WD F+ + KP
Sbjct: 142 SGLDGNGKGRIIIAEYENYYLINAYVPNSG--RGLVNLDKRKFWDDCYFSFIKKLDLNKP 199
Query: 83 LIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRL 142
+++ GDLNV+H+EID+++P+ NK GFT ER F +L G
Sbjct: 200 IVYVGDLNVAHQEIDLANPK----------TNYNK----TAGFTDQERNDFTRLLDAG-F 244
Query: 143 IDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELE 202
+D +R L+ EK+ F WS + + R+DYF+VSE + +++ C++ L
Sbjct: 245 VDVFRRLNPEKEGVYTF-WSNMRNAREKNVGWRLDYFVVSERIMNKVKECDI------LC 297
Query: 203 GFYGSDHCPVSLEL 216
GSDHCP+SL +
Sbjct: 298 SVKGSDHCPLSLTI 311
>gi|317058758|ref|ZP_07923243.1| exodeoxyribonuclease III [Fusobacterium sp. 3_1_5R]
gi|313684434|gb|EFS21269.1| exodeoxyribonuclease III [Fusobacterium sp. 3_1_5R]
Length = 250
Score = 102 bits (254), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 66/195 (33%), Positives = 102/195 (52%), Gaps = 26/195 (13%)
Query: 23 LSALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GK 81
L +++ +GRVI EFE FY++ Y PN+ K E R W+ + ++ + + K
Sbjct: 80 LGIEEHDQEGRVITLEFEDFYMVTVYTPNS--KNELERLDYRMIWEDEFRSYLAKLNEAK 137
Query: 82 PLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGR 141
P++ CGD+NV+HEEID+ +P K + GFT ER +F +LK G
Sbjct: 138 PVVVCGDMNVAHEEIDLKNP---------------KTNRRNAGFTDEERTKFTELLKAG- 181
Query: 142 LIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIEL 201
D++R+L+ ++ + WS + RIDYF+VS + K++I E+ E
Sbjct: 182 FTDSFRYLYPDR-LHAYSWWSYRANARKNNTGWRIDYFVVSNDWKEQIQEAEIHA---EQ 237
Query: 202 EGFYGSDHCPVSLEL 216
E GSDHCPV+L L
Sbjct: 238 E---GSDHCPVALYL 249
>gi|205373614|ref|ZP_03226417.1| exodeoxyribonuclease [Bacillus coahuilensis m4-4]
Length = 195
Score = 102 bits (254), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 64/189 (33%), Positives = 99/189 (52%), Gaps = 26/189 (13%)
Query: 31 DGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDL 89
+GR+I EF FY++ Y PN+ K + + + R +W+ +Q ++ + + KP+I+CGDL
Sbjct: 32 EGRMITLEFSDFYVVTMYTPNS--KRDLSRLEERLEWEDLVQGYLDKLNQKKPVIFCGDL 89
Query: 90 NVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFL 149
NV+H E+DV + ++ + G GFT ER++ +L G D YR+
Sbjct: 90 NVAHTELDVKN---------------DRANQGNSGFTQVEREKMNGLLDLG-FTDTYRYF 133
Query: 150 HKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDH 209
+ +D D WS + R RIDYFIVS + I ++ H YGSDH
Sbjct: 134 NPARD-DQFTWWSYMKGVRERNIGWRIDYFIVSTSFMNTISNSDIHDH------VYGSDH 186
Query: 210 CPVSLELSE 218
CP+ LELS+
Sbjct: 187 CPIVLELSK 195
>gi|154497021|ref|ZP_02035717.1| hypothetical protein BACCAP_01314 [Bacteroides capillosus ATCC
29799]
gi|150273420|gb|EDN00548.1| hypothetical protein BACCAP_01314 [Pseudoflavonifractor capillosus
ATCC 29799]
Length = 250
Score = 102 bits (254), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 65/191 (34%), Positives = 102/191 (53%), Gaps = 26/191 (13%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIW 85
+++ +GR I EFE FYL+N Y PN + E R +W+ ++ ++L+ S KP+I+
Sbjct: 84 EHDREGRAITLEFEDFYLVNCYVPNA--QRELTRLDWRMEWEDALRAYLLELDSRKPVIY 141
Query: 86 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 145
CGDLNV+H+EID+ + K + G GFT ER + +L+ G +D+
Sbjct: 142 CGDLNVAHQEIDLKNA---------------KSNRGNAGFTDEERAKMTQLLEAG-FVDS 185
Query: 146 YRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 205
+R L+ +K + WS + + RIDYF+VS+ + D+I G I
Sbjct: 186 FRHLYPDKTGAYSW-WSYMFHAREKNAGWRIDYFLVSKSIADKI------GDSIIHPEIM 238
Query: 206 GSDHCPVSLEL 216
GSDHCPV L++
Sbjct: 239 GSDHCPVELDI 249
>gi|345022885|ref|ZP_08786498.1| exodeoxyribonuclease III Xth [Ornithinibacillus scapharcae TW25]
Length = 252
Score = 102 bits (254), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 65/196 (33%), Positives = 101/196 (51%), Gaps = 26/196 (13%)
Query: 23 LSALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-K 81
LS + + +GR++ EFE F+L+N Y PN+ + + R +W+ + E VL K
Sbjct: 80 LSNEESQVEGRILTLEFENFFLINVYTPNS--QRDLARLDVRLEWEDVLLEHVLAHDRIK 137
Query: 82 PLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGR 141
P++ CGDLNV+H EID+ + K ++G GFT ER++ L G
Sbjct: 138 PVVLCGDLNVAHREIDIRNY---------------KSNYGNSGFTDEEREKMTRFLNAG- 181
Query: 142 LIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIEL 201
ID R+ H + + + WS + R RIDYFIVSE L++++I +
Sbjct: 182 FIDTLRYFHPDTEGIYTW-WSYMKTVRERNIGWRIDYFIVSERLREKLIDSKAD------ 234
Query: 202 EGFYGSDHCPVSLELS 217
+GSDHCP+ L++S
Sbjct: 235 TAIFGSDHCPIVLDIS 250
>gi|253574957|ref|ZP_04852296.1| exodeoxyribonuclease III [Paenibacillus sp. oral taxon 786 str.
D14]
gi|251845413|gb|EES73422.1| exodeoxyribonuclease III [Paenibacillus sp. oral taxon 786 str.
D14]
Length = 251
Score = 102 bits (254), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 66/190 (34%), Positives = 97/190 (51%), Gaps = 26/190 (13%)
Query: 28 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWC 86
YEP+GR+I EFE FYL+ Y PN K + + R +W+ R + ++ KP+I C
Sbjct: 85 YEPEGRIITLEFEQFYLVTVYTPNA--KRDLSRLDYRMEWEDRFRTYLTGLDAVKPVIVC 142
Query: 87 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 146
GDLNV+H ID+ + K + G G+T+ ER + +L G ID +
Sbjct: 143 GDLNVAHNPIDIKNA---------------KSNEGNSGYTLEERGKMTELLASG-FIDTF 186
Query: 147 RFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYG 206
R + +++ + WS P + R RIDYF+ S L A ++Q GI+ G
Sbjct: 187 RHFYPDREGVYSW-WSYMPKIRERNIGWRIDYFLASSRL-----APKLQDAGIDCH-ILG 239
Query: 207 SDHCPVSLEL 216
SDHCPVSL +
Sbjct: 240 SDHCPVSLTV 249
>gi|312067871|ref|XP_003136947.1| exodeoxyribonuclease III family protein [Loa loa]
Length = 306
Score = 102 bits (254), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 66/194 (34%), Positives = 103/194 (53%), Gaps = 25/194 (12%)
Query: 24 SALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKP 82
S L GR+I+AE+E +YL+N Y PN+G + +R+ WD F+ + KP
Sbjct: 135 SGLDGNGKGRIIIAEYENYYLINAYVPNSG--RGLVNLDKRKFWDDCYFSFIKKLDLNKP 192
Query: 83 LIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRL 142
+++ GDLNV+H+EID+++P+ NK GFT ER F +L G
Sbjct: 193 IVYVGDLNVAHQEIDLANPK----------TNYNK----TAGFTDQERNDFTRLLDAG-F 237
Query: 143 IDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELE 202
+D +R L+ EK+ F WS + + R+DYF+VSE + +++ C++ L
Sbjct: 238 VDVFRRLNPEKEGVYTF-WSNMRNAREKNVGWRLDYFVVSERIMNKVKECDI------LC 290
Query: 203 GFYGSDHCPVSLEL 216
GSDHCP+SL +
Sbjct: 291 SVKGSDHCPLSLTI 304
>gi|220930682|ref|YP_002507591.1| exodeoxyribonuclease III Xth [Clostridium cellulolyticum H10]
gi|220001010|gb|ACL77611.1| exodeoxyribonuclease III Xth [Clostridium cellulolyticum H10]
Length = 253
Score = 102 bits (253), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 67/191 (35%), Positives = 103/191 (53%), Gaps = 26/191 (13%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIW 85
+++ +GRVI EF+ ++L+N Y PN+ K E + R KW+ + ++ Q KP+I
Sbjct: 87 EHDNEGRVITLEFDQYFLVNVYTPNS--KRELERLEYRMKWEDDFRIYLKQLEETKPVII 144
Query: 86 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 145
CGD+NV+H+EID+ +P NK GFT+ ER++F +L++G +D+
Sbjct: 145 CGDMNVAHKEIDIKNPR------------SNKR---SAGFTMEEREKFSELLEQG-FVDS 188
Query: 146 YRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 205
YR L+ +K + WS + R RIDYF VSE LK+ I ++
Sbjct: 189 YRTLYPDKTGAYTW-WSYMFKARERNVGWRIDYFCVSEVLKNIIEEADIYSE------IM 241
Query: 206 GSDHCPVSLEL 216
GSDHCPV L +
Sbjct: 242 GSDHCPVGLTI 252
>gi|184154634|ref|YP_001842974.1| exodeoxyribonuclease [Lactobacillus fermentum IFO 3956]
gi|227513882|ref|ZP_03943931.1| exodeoxyribonuclease III [Lactobacillus fermentum ATCC 14931]
gi|183225978|dbj|BAG26494.1| exodeoxyribonuclease [Lactobacillus fermentum IFO 3956]
gi|227087743|gb|EEI23055.1| exodeoxyribonuclease III [Lactobacillus fermentum ATCC 14931]
Length = 279
Score = 102 bits (253), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 64/195 (32%), Positives = 98/195 (50%), Gaps = 29/195 (14%)
Query: 31 DGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDL 89
+GR+I EFE FYL Y PN+G + R++WD R +E++ + KP+I GD
Sbjct: 111 EGRIITLEFENFYLTEVYTPNSGTGLKR--LAERQEWDDRYREYLTELDRQKPVIASGDF 168
Query: 90 NVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFL 149
NV+HEEID++HP + GFT ER++F A+L G D++R L
Sbjct: 169 NVAHEEIDLAHP---------------ANNHHSAGFTDEEREKFTALLAAG-FTDSFRSL 212
Query: 150 HKEKDMDCGFSWSGN--PIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGS 207
H D +SW K RIDY++VS+ L D++++ M G
Sbjct: 213 H--PDETGAYSWWAQRAVTSKVNNSGWRIDYWLVSDRLADQVVSSTMIDSGER------R 264
Query: 208 DHCPVSLELSEASSD 222
DH P+ L+++ ++D
Sbjct: 265 DHAPIQLDINIPAAD 279
>gi|363893404|ref|ZP_09320502.1| exodeoxyribonuclease [Eubacteriaceae bacterium ACC19a]
gi|361963708|gb|EHL16774.1| exodeoxyribonuclease [Eubacteriaceae bacterium ACC19a]
Length = 251
Score = 102 bits (253), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 62/198 (31%), Positives = 104/198 (52%), Gaps = 26/198 (13%)
Query: 20 HFLLSALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS 79
H+ L +++ +GR+I E+E +Y+ Y PN + E R+KW+ +E+ +
Sbjct: 77 HYGLGIEEHDMEGRLITLEYENYYIATVYTPNA--QPELARLAYRQKWEDDFREYFKKLD 134
Query: 80 -GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILK 138
KP+I CGD+NV+H+EID+ +P K + PGF+ ER++F L
Sbjct: 135 EKKPVIICGDMNVAHQEIDLKNP---------------KNNRKNPGFSDEEREKFTIFLN 179
Query: 139 EGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHG 198
G ID +R+++ +K + + WS + RIDYF VS+ LK+++ + +
Sbjct: 180 AG-FIDTFRYIYPDKTDEYSW-WSYRFNARKNNAGWRIDYFCVSDRLKEKLKSASIH--- 234
Query: 199 IELEGFYGSDHCPVSLEL 216
+ GSDHCPVS+E+
Sbjct: 235 ---QDVMGSDHCPVSIEI 249
>gi|385811883|ref|YP_005848274.1| exodeoxyribonuclease [Lactobacillus fermentum CECT 5716]
gi|299782782|gb|ADJ40780.1| Exodeoxyribonuclease [Lactobacillus fermentum CECT 5716]
Length = 279
Score = 102 bits (253), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 64/195 (32%), Positives = 98/195 (50%), Gaps = 29/195 (14%)
Query: 31 DGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDL 89
+GR+I EFE FYL Y PN+G + R++WD R +E++ + KP+I GD
Sbjct: 111 EGRIITLEFENFYLTEVYTPNSGTGLKR--LAERQEWDDRYREYLTELDRQKPVIASGDF 168
Query: 90 NVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFL 149
NV+HEEID++HP + GFT ER++F A+L G D++R L
Sbjct: 169 NVAHEEIDLAHP---------------ANNHHSAGFTDEEREKFTALLAAG-FTDSFRSL 212
Query: 150 HKEKDMDCGFSWSGN--PIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGS 207
H D +SW K RIDY++VS+ L D++++ M G
Sbjct: 213 H--PDETGAYSWWAQRAVTSKVNNSGWRIDYWLVSDRLADQVVSSTMIDSGER------R 264
Query: 208 DHCPVSLELSEASSD 222
DH P+ L+++ ++D
Sbjct: 265 DHAPIQLDINIPAAD 279
>gi|260592674|ref|ZP_05858132.1| exodeoxyribonuclease III [Prevotella veroralis F0319]
gi|260535444|gb|EEX18061.1| exodeoxyribonuclease III [Prevotella veroralis F0319]
Length = 249
Score = 102 bits (253), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 62/192 (32%), Positives = 102/192 (53%), Gaps = 29/192 (15%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIW 85
+++ +GRVI E + FYL+ Y PN+ ++E + R KW+ Q ++ + KP+I
Sbjct: 84 EHDHEGRVITLEMDDFYLVTVYTPNS--QDELRRLEYRMKWEDDFQSYLHKLDEIKPVIV 141
Query: 86 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 145
CGD+NV+H+EID+ +P K + GFT ER++ +L G ID
Sbjct: 142 CGDMNVAHQEIDLKNP---------------KTNRRNAGFTDEERQKMTQLLSNG-FIDT 185
Query: 146 YRFLHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGF 204
+R L+ E+ +S WS + + RIDYF++SE L+DR++ ++
Sbjct: 186 FRTLYPEQ---VTYSWWSYRFRAREKNTGWRIDYFLISERLRDRLVDAKIHTE------I 236
Query: 205 YGSDHCPVSLEL 216
GSDHCP+ ++L
Sbjct: 237 MGSDHCPIEIDL 248
>gi|225548156|ref|ZP_03769441.1| hypothetical protein RUMHYD_00135 [Blautia hydrogenotrophica DSM
10507]
gi|225040687|gb|EEG50933.1| exodeoxyribonuclease III [Blautia hydrogenotrophica DSM 10507]
Length = 251
Score = 102 bits (253), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 59/192 (30%), Positives = 102/192 (53%), Gaps = 26/192 (13%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIW 85
+++ +GRVI E+E FY + Y PN+ + E R W++ E++ + KP++W
Sbjct: 84 EHDQEGRVITLEYEDFYFVTVYTPNS--QNELARLSYRMDWERDFLEYLTKLEERKPVVW 141
Query: 86 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 145
CGDLNV+H+EID+ +P K + GFT ER F +L+ G ID
Sbjct: 142 CGDLNVAHQEIDLKNP---------------KTNRKNAGFTDEERACFTKVLESG-FIDT 185
Query: 146 YRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 205
+R+ + +++ + WS + + RIDYF+VS L+++++ ++ +
Sbjct: 186 FRYFYPDQEGIYSW-WSYRFRAREKNAGWRIDYFLVSSSLREKMVDAKIHTQVL------ 238
Query: 206 GSDHCPVSLELS 217
GSDHCPV L+++
Sbjct: 239 GSDHCPVELDIT 250
>gi|291276452|ref|YP_003516224.1| exodeoxyribonuclease [Helicobacter mustelae 12198]
gi|290963646|emb|CBG39478.1| putative exodeoxyribonuclease [Helicobacter mustelae 12198]
Length = 250
Score = 102 bits (253), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 68/193 (35%), Positives = 103/193 (53%), Gaps = 30/193 (15%)
Query: 28 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 86
++ +GRVI AE+ FYL+N Y PN+ K E + R +W+ F+ KPLI C
Sbjct: 85 HDKEGRVICAEYPDFYLINVYTPNS--KRELERLEYRMQWEDDFLNFLKNLERKKPLIIC 142
Query: 87 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 146
GDLNV+H+EID+ +P K + GFT ER++ +L+ G ID +
Sbjct: 143 GDLNVAHKEIDLKNP---------------KTNRRNAGFTDEEREKMTTLLENG-FIDTF 186
Query: 147 RFLHKEKDMDCGFSWSGNPIGKYRGKRM--RIDYFIVSEELKDRIIACEMQGHGIELEGF 204
R+ + D++ +SW + +G+ R RIDYF+ SE L+ R+I ++ +
Sbjct: 187 RYFY--PDLEGAYSW-WSYMGRARQNNTGWRIDYFLCSEILQKRLIEAKIYSEIL----- 238
Query: 205 YGSDHCPVSLELS 217
GSDHCPV L +S
Sbjct: 239 -GSDHCPVGLVIS 250
>gi|384891873|ref|YP_005766006.1| Exo deoxyribonuclease III [Helicobacter pylori 908]
gi|385224548|ref|YP_005784474.1| Exodeoxyribonuclease III [Helicobacter pylori 2017]
gi|385232401|ref|YP_005792320.1| Exodeoxyribonuclease III [Helicobacter pylori 2018]
gi|307638182|gb|ADN80632.1| Exo deoxyribonuclease III [Helicobacter pylori 908]
gi|325996778|gb|ADZ52183.1| Exodeoxyribonuclease III [Helicobacter pylori 2018]
gi|325998370|gb|ADZ50578.1| Exodeoxyribonuclease III [Helicobacter pylori 2017]
Length = 250
Score = 102 bits (253), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 67/192 (34%), Positives = 100/192 (52%), Gaps = 28/192 (14%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEF--VLQCSGKPLI 84
+++ +GRVI EFE+FYL+N Y PN+ ++ + R W+ ++F VL+ KP+I
Sbjct: 84 EHDKEGRVITCEFESFYLVNVYTPNS--QQALSRLSYRMSWEMEFKKFLKVLELK-KPVI 140
Query: 85 WCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLID 144
CGDLNV+H EID+ +P K + GF+ ERK+F +L G ID
Sbjct: 141 VCGDLNVAHNEIDLENP---------------KTNRKNAGFSDEERKKFNELLNAG-FID 184
Query: 145 AYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGF 204
+R+ + K+ + WS + + RIDYF+ S LK R+ + +
Sbjct: 185 TFRYFYPNKEKAYTW-WSYMQQARDKDIGWRIDYFLCSNPLKTRL------KDALIYKDI 237
Query: 205 YGSDHCPVSLEL 216
GSDHCPV LEL
Sbjct: 238 LGSDHCPVGLEL 249
>gi|375342925|gb|AFA54864.1| exodeoxyribonuclease III [uncultured Eggerthella sp. SMG5]
Length = 261
Score = 102 bits (253), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 65/199 (32%), Positives = 100/199 (50%), Gaps = 36/199 (18%)
Query: 29 EPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKR-------IQEFVL----Q 77
+ +GRV++ EFE ++L+N Y PN + E R WD R ++E VL
Sbjct: 86 DTEGRVVICEFEQYWLVNVYTPNA--QSELARLDHRMAWDDRFRDICKGLEEGVLPDGQA 143
Query: 78 CSGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAIL 137
+ KP++ CGD NV+H+EID+ +P + + G PGF+ ER +F +L
Sbjct: 144 GNAKPVVMCGDFNVAHQEIDLKNP---------------RSNRGNPGFSDEERAKFTCLL 188
Query: 138 KEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGH 197
G ID +R+L+ + + WS + RIDYF+VSE L++++ +
Sbjct: 189 DAG-FIDTFRYLNPATEGAYSW-WSYRFHARANNAGWRIDYFLVSEALREKVQMANIYSE 246
Query: 198 GIELEGFYGSDHCPVSLEL 216
GSDHCPVS+EL
Sbjct: 247 ------IMGSDHCPVSVEL 259
>gi|429766260|ref|ZP_19298534.1| exodeoxyribonuclease III [Clostridium celatum DSM 1785]
gi|429185240|gb|EKY26229.1| exodeoxyribonuclease III [Clostridium celatum DSM 1785]
Length = 250
Score = 102 bits (253), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 64/195 (32%), Positives = 103/195 (52%), Gaps = 26/195 (13%)
Query: 23 LSALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGK 81
L +++ +GRVI EFE F+++ Y PN+ + E R KW+ ++++ K
Sbjct: 80 LGIEEHDKEGRVITLEFEDFFMITVYTPNS--QNELARLDYRMKWEDDFKKYLKHLEKSK 137
Query: 82 PLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGR 141
P+I CGDLNV+H+EID+ +P N+++ GFT ER++ ++L +G
Sbjct: 138 PVIVCGDLNVAHKEIDLKNP------------TTNRKN---AGFTDEEREKLTSLLNDG- 181
Query: 142 LIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIEL 201
ID +R+ + E + WS + RIDYF+VSE LKDR+ + ++ +
Sbjct: 182 FIDTFRYFYPETTGVYSW-WSYRFNARKNNAGWRIDYFVVSESLKDRLESAKIHTEVL-- 238
Query: 202 EGFYGSDHCPVSLEL 216
GSDHCPV L +
Sbjct: 239 ----GSDHCPVELTI 249
>gi|56963720|ref|YP_175451.1| exodeoxyribonuclease III [Bacillus clausii KSM-K16]
gi|56909963|dbj|BAD64490.1| exodeoxyribonuclease III [Bacillus clausii KSM-K16]
Length = 260
Score = 102 bits (253), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 64/198 (32%), Positives = 102/198 (51%), Gaps = 26/198 (13%)
Query: 29 EPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFV-LQCSGKPLIWCG 87
E +GRVI EFET+Y++ Y PN K + + R +W+K +E++ L + KP+++CG
Sbjct: 86 ENEGRVITLEFETYYVVTMYTPNA--KRDLSRLPYRLQWEKAAREYLTLLATQKPVVFCG 143
Query: 88 DLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYR 147
DLNV+H+ IDV + ++ + G GFT ER FG +L+ G +D +R
Sbjct: 144 DLNVAHQPIDVRN---------------DRANVGNSGFTDEERAEFGKLLEAG-FVDTFR 187
Query: 148 FLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGS 207
+ + D D WS + R RIDYF++S L ++ + + GS
Sbjct: 188 HFYPD-DEDAFTWWSYMANVRARNIGWRIDYFLISRALMPYLVDASIHSSVL------GS 240
Query: 208 DHCPVSLELSEASSDSEK 225
DHCP+ L L ++S +
Sbjct: 241 DHCPIELCLDLQPNESSR 258
>gi|349612033|ref|ZP_08891261.1| exodeoxyribonuclease [Lactobacillus sp. 7_1_47FAA]
gi|348609208|gb|EGY59168.1| exodeoxyribonuclease [Lactobacillus sp. 7_1_47FAA]
Length = 275
Score = 102 bits (253), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 66/191 (34%), Positives = 95/191 (49%), Gaps = 29/191 (15%)
Query: 29 EPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWCG 87
+ +GR+I EF+TFYL Y PN+G E R WD + QE++ + KP+I G
Sbjct: 109 DQEGRIITLEFDTFYLTQVYTPNSG--NELKRLADREIWDTKYQEYLAKLDQNKPVIASG 166
Query: 88 DLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYR 147
D NV+H+EID+ HPE + GFT ERK F +L G ID +R
Sbjct: 167 DYNVAHQEIDLKHPE---------------TNHHNAGFTDEERKGFSKLLSLG-FIDTFR 210
Query: 148 FLHKEKDMDCGFSWSGNPI--GKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 205
+++ D+ +SW I K RIDY++VS+ L D+I +M G
Sbjct: 211 YIN--GDITDVYSWWSQRIRTSKTNNAGWRIDYYLVSQRLADKIEQSKMIDTGDR----- 263
Query: 206 GSDHCPVSLEL 216
DHCP+ L++
Sbjct: 264 -KDHCPILLKI 273
>gi|380796163|gb|AFE69957.1| DNA-(apurinic or apyrimidinic site) lyase, partial [Macaca mulatta]
Length = 297
Score = 102 bits (253), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 64/192 (33%), Positives = 106/192 (55%), Gaps = 25/192 (13%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQ-CSGKPLIW 85
+++ +GRVI+AEF++F L+ TY PN G + R++WD+ ++F+ S KPL+
Sbjct: 129 EHDQEGRVIVAEFDSFVLVTTYVPNAG--RGLVRLEYRQRWDEAFRKFLKGLASRKPLVL 186
Query: 86 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 145
CGDLNV+HEEID+ +P+ NK++ GFT ER+ FG +L+ L D+
Sbjct: 187 CGDLNVAHEEIDLRNPKG------------NKKN---AGFTPQERQGFGELLQAVPLADS 231
Query: 146 YRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 205
+R L+ F W+ + + R+DYF++S L + +++ +
Sbjct: 232 FRHLYPNTPYAYTF-WTYMMNARSKNVGWRLDYFLLSHSLLPALCDSKIRSKAL------ 284
Query: 206 GSDHCPVSLELS 217
GSDHCP++L L+
Sbjct: 285 GSDHCPITLYLA 296
>gi|363889335|ref|ZP_09316698.1| exodeoxyribonuclease [Eubacteriaceae bacterium CM5]
gi|361966758|gb|EHL19645.1| exodeoxyribonuclease [Eubacteriaceae bacterium CM5]
Length = 251
Score = 102 bits (253), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 62/198 (31%), Positives = 103/198 (52%), Gaps = 26/198 (13%)
Query: 20 HFLLSALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS 79
H+ L +++ +GR+I E+E +Y+ Y PN + E R+KW+ +E+ +
Sbjct: 77 HYGLGIEEHDMEGRLITLEYENYYIATVYTPNA--QPELARLAYRQKWEDDFREYFKKLD 134
Query: 80 -GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILK 138
KP+I CGD+NV+H+EID+ +P K + PGF+ ER++F L
Sbjct: 135 EKKPVIICGDMNVAHQEIDLKNP---------------KNNRKNPGFSDEEREKFTMFLN 179
Query: 139 EGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHG 198
G ID +R+ + +K + + WS + RIDYF VS+ LK+++ + +
Sbjct: 180 SG-FIDTFRYFYPDKTDEYSW-WSYRFNARKNNAGWRIDYFCVSDRLKEKLKSASIH--- 234
Query: 199 IELEGFYGSDHCPVSLEL 216
+ GSDHCPVS+E+
Sbjct: 235 ---QDVMGSDHCPVSIEI 249
>gi|309806468|ref|ZP_07700473.1| exodeoxyribonuclease III [Lactobacillus iners LactinV 03V1-b]
gi|308167141|gb|EFO69315.1| exodeoxyribonuclease III [Lactobacillus iners LactinV 03V1-b]
Length = 275
Score = 102 bits (253), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 66/191 (34%), Positives = 95/191 (49%), Gaps = 29/191 (15%)
Query: 29 EPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWCG 87
+ +GR+I EF+TFYL Y PN+G E R WD + QE++ + KP+I G
Sbjct: 109 DQEGRIITLEFDTFYLTQVYTPNSG--NELKRLADREIWDTKYQEYLAKLDQNKPVIASG 166
Query: 88 DLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYR 147
D NV+H+EID+ HPE + GFT ERK F +L G ID +R
Sbjct: 167 DYNVAHQEIDLKHPE---------------TNHHNAGFTDEERKGFSKLLSLG-FIDTFR 210
Query: 148 FLHKEKDMDCGFSWSGNPI--GKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 205
+++ D+ +SW I K RIDY++VS+ L D+I +M G
Sbjct: 211 YIN--GDITDVYSWWSQRIRTSKTNNAGWRIDYYLVSQRLADKIEQSKMIDTGDR----- 263
Query: 206 GSDHCPVSLEL 216
DHCP+ L++
Sbjct: 264 -KDHCPILLKI 273
>gi|392960130|ref|ZP_10325603.1| exodeoxyribonuclease III Xth [Pelosinus fermentans DSM 17108]
gi|392455642|gb|EIW32426.1| exodeoxyribonuclease III Xth [Pelosinus fermentans DSM 17108]
Length = 250
Score = 102 bits (253), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 64/195 (32%), Positives = 99/195 (50%), Gaps = 26/195 (13%)
Query: 23 LSALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGK 81
L+ +++ +GR+I EFE F+L+N Y PN+ K E R +W+ + ++ K
Sbjct: 80 LNIEEHDQEGRIITLEFEDFFLVNVYTPNS--KRELLRLDYRMRWEDEFRTYLTALDQSK 137
Query: 82 PLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGR 141
P+I CGD+NV+H+EID+ +P K + GFT ER + A+L+ G
Sbjct: 138 PVIICGDINVAHQEIDIKNP---------------KTNRRNAGFTDEERDKMTALLEAG- 181
Query: 142 LIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIEL 201
D +R ++ +K +D WS + R RIDYF+VS L+D I +
Sbjct: 182 FTDTFRHIYPDK-IDAYTWWSYMMNARARNIGWRIDYFLVSNTLRDAIKEATI------Y 234
Query: 202 EGFYGSDHCPVSLEL 216
GSDHCP+ LE+
Sbjct: 235 PDVMGSDHCPIGLEI 249
>gi|295110263|emb|CBL24216.1| exodeoxyribonuclease III [Ruminococcus obeum A2-162]
Length = 253
Score = 101 bits (252), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 66/190 (34%), Positives = 100/190 (52%), Gaps = 26/190 (13%)
Query: 28 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 86
++ +GRVI EFE FY + Y PN+ + E + R +W++ ++L+ KP+I C
Sbjct: 85 HDKEGRVITLEFEEFYFVTVYTPNS--QSELRRLEYRMEWERDFLAYLLKLQEKKPVICC 142
Query: 87 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 146
GD+NV+H+EID+ +P K + GFT ER F +L+ G +D +
Sbjct: 143 GDMNVAHQEIDLKNP---------------KTNRKNAGFTDEERACFSRMLESG-FVDTF 186
Query: 147 RFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYG 206
R+ + +K+ + WS + + RIDYFIVS LKDR +Q I E G
Sbjct: 187 RYFYPDKEGIYSW-WSYRFKAREKNAGWRIDYFIVSPSLKDR-----LQDASIHTE-IMG 239
Query: 207 SDHCPVSLEL 216
SDHCPV L++
Sbjct: 240 SDHCPVELDI 249
>gi|226467620|emb|CAX69686.1| APEX nuclease [Schistosoma japonicum]
Length = 319
Score = 101 bits (252), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 65/190 (34%), Positives = 95/190 (50%), Gaps = 24/190 (12%)
Query: 28 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWC 86
++ +GRVI AEF+ FYL+ Y PN G + R ++WD E++ + + KP+I C
Sbjct: 151 HDEEGRVITAEFDRFYLVTAYVPNAGQGLARLPY-REKEWDPDFLEYLRKLDATKPVIVC 209
Query: 87 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 146
GDLNV+HEEID++ P+ + GFT ER F +L LID Y
Sbjct: 210 GDLNVAHEEIDLARPD---------------TNHKTAGFTDQERSGFTKLLSSANLIDTY 254
Query: 147 RFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYG 206
R + ++ F WS + R+DYF+VS+ + + E++ G G
Sbjct: 255 RHFYPDRREAYSF-WSYRTGARLINNGWRLDYFLVSQRILANVGDQEIRC------GVTG 307
Query: 207 SDHCPVSLEL 216
SDHCPV L L
Sbjct: 308 SDHCPVVLYL 317
>gi|160915303|ref|ZP_02077516.1| hypothetical protein EUBDOL_01312 [Eubacterium dolichum DSM 3991]
gi|158433102|gb|EDP11391.1| exodeoxyribonuclease III [Eubacterium dolichum DSM 3991]
Length = 252
Score = 101 bits (252), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 66/193 (34%), Positives = 104/193 (53%), Gaps = 26/193 (13%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIW 85
+++ +GRVI E++TFYL+ Y PN+ K+ R +W+ + ++ + K ++
Sbjct: 84 EHDHEGRVITCEYDTFYLVCVYTPNS--KDGLLRLDYRMQWEDAFRAYLQRLKESKSVVV 141
Query: 86 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 145
CGDLNV+H+EID+ +P K + GFT ER++ +L G +D+
Sbjct: 142 CGDLNVAHQEIDLKNP---------------KTNRRNAGFTDEEREKMTTLLSSG-FVDS 185
Query: 146 YRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 205
YR+L+ +K+ + WS + + RIDYF+VSE+ K+RI E Q H Y
Sbjct: 186 YRYLYPDKENVYSW-WSYRFSAREKNAGWRIDYFLVSEDAKERIE--EAQIH----TDIY 238
Query: 206 GSDHCPVSLELSE 218
GSDHCPVSL +
Sbjct: 239 GSDHCPVSLSFKD 251
>gi|259500789|ref|ZP_05743691.1| exodeoxyribonuclease III [Lactobacillus iners DSM 13335]
gi|302190760|ref|ZP_07267014.1| exonuclease III [Lactobacillus iners AB-1]
gi|312871137|ref|ZP_07731235.1| exodeoxyribonuclease III [Lactobacillus iners LEAF 3008A-a]
gi|312872693|ref|ZP_07732758.1| exodeoxyribonuclease III [Lactobacillus iners LEAF 2062A-h1]
gi|312874955|ref|ZP_07734974.1| exodeoxyribonuclease III [Lactobacillus iners LEAF 2053A-b]
gi|329919752|ref|ZP_08276703.1| exodeoxyribonuclease III [Lactobacillus iners SPIN 1401G]
gi|259167483|gb|EEW51978.1| exodeoxyribonuclease III [Lactobacillus iners DSM 13335]
gi|311089700|gb|EFQ48125.1| exodeoxyribonuclease III [Lactobacillus iners LEAF 2053A-b]
gi|311091735|gb|EFQ50114.1| exodeoxyribonuclease III [Lactobacillus iners LEAF 2062A-h1]
gi|311093151|gb|EFQ51497.1| exodeoxyribonuclease III [Lactobacillus iners LEAF 3008A-a]
gi|328937099|gb|EGG33527.1| exodeoxyribonuclease III [Lactobacillus iners SPIN 1401G]
Length = 275
Score = 101 bits (252), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 66/191 (34%), Positives = 95/191 (49%), Gaps = 29/191 (15%)
Query: 29 EPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWCG 87
+ +GR+I EF+TFYL Y PN+G E R WD + QE++ + KP+I G
Sbjct: 109 DQEGRIITLEFDTFYLTQVYTPNSG--NELKRLADREIWDTKYQEYLAKLDQNKPVIASG 166
Query: 88 DLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYR 147
D NV+H+EID+ HPE + GFT ERK F +L G ID +R
Sbjct: 167 DYNVAHQEIDLKHPE---------------TNHHNAGFTDEERKGFSKLLSLG-FIDTFR 210
Query: 148 FLHKEKDMDCGFSWSGNPI--GKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 205
+++ D+ +SW I K RIDY++VS+ L D+I +M G
Sbjct: 211 YIN--GDITDVYSWWSQRIRTSKTNNAGWRIDYYLVSQRLADKIEQSKMIDTGDR----- 263
Query: 206 GSDHCPVSLEL 216
DHCP+ L++
Sbjct: 264 -KDHCPILLKI 273
>gi|329120913|ref|ZP_08249545.1| exodeoxyribonuclease III [Dialister micraerophilus DSM 19965]
gi|327471372|gb|EGF16823.1| exodeoxyribonuclease III [Dialister micraerophilus DSM 19965]
Length = 254
Score = 101 bits (252), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 63/188 (33%), Positives = 102/188 (54%), Gaps = 26/188 (13%)
Query: 28 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 86
++ +GR+I AEF+ +L+ Y PN+ + + + R KW+ + ++L+ + KP+I C
Sbjct: 88 HDQEGRLITAEFKNHFLVVCYTPNS--QRQLARLEYRMKWENDFKNYLLKLTESKPVILC 145
Query: 87 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 146
GDLNV+H+EID+++P + GFT ERK+F +L+ G D +
Sbjct: 146 GDLNVAHKEIDLANPS---------------SNHKNAGFTDDERKKFSTLLENG-FTDTF 189
Query: 147 RFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYG 206
R+L+ +K D WS + R RIDYF+VS++LK++I ++ G
Sbjct: 190 RYLYPDKK-DAYSWWSYFAKSRERNIGWRIDYFLVSDKLKNKIKDAKIHPE------IQG 242
Query: 207 SDHCPVSL 214
SDHCPV L
Sbjct: 243 SDHCPVEL 250
>gi|212694611|ref|ZP_03302739.1| hypothetical protein BACDOR_04139 [Bacteroides dorei DSM 17855]
gi|237711123|ref|ZP_04541604.1| exodeoxyribonuclease [Bacteroides sp. 9_1_42FAA]
gi|265750710|ref|ZP_06086773.1| exodeoxyribonuclease III [Bacteroides sp. 3_1_33FAA]
gi|345515228|ref|ZP_08794734.1| exodeoxyribonuclease [Bacteroides dorei 5_1_36/D4]
gi|423228072|ref|ZP_17214478.1| exodeoxyribonuclease III (xth) [Bacteroides dorei CL02T00C15]
gi|423239233|ref|ZP_17220349.1| exodeoxyribonuclease III (xth) [Bacteroides dorei CL03T12C01]
gi|423243335|ref|ZP_17224411.1| exodeoxyribonuclease III (xth) [Bacteroides dorei CL02T12C06]
gi|212663112|gb|EEB23686.1| exodeoxyribonuclease III [Bacteroides dorei DSM 17855]
gi|229434345|gb|EEO44422.1| exodeoxyribonuclease [Bacteroides dorei 5_1_36/D4]
gi|229454967|gb|EEO60688.1| exodeoxyribonuclease [Bacteroides sp. 9_1_42FAA]
gi|263237606|gb|EEZ23056.1| exodeoxyribonuclease III [Bacteroides sp. 3_1_33FAA]
gi|392637108|gb|EIY30983.1| exodeoxyribonuclease III (xth) [Bacteroides dorei CL02T00C15]
gi|392645342|gb|EIY39070.1| exodeoxyribonuclease III (xth) [Bacteroides dorei CL02T12C06]
gi|392647020|gb|EIY40726.1| exodeoxyribonuclease III (xth) [Bacteroides dorei CL03T12C01]
Length = 252
Score = 101 bits (252), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 63/195 (32%), Positives = 101/195 (51%), Gaps = 26/195 (13%)
Query: 23 LSALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GK 81
L +++ +GRVI E E++YL+ Y PN+ +EE R KWD + ++ + K
Sbjct: 81 LGIEEHDHEGRVITLELESYYLITVYTPNS--QEELRRLDYRMKWDDDFRAYLKKLEEKK 138
Query: 82 PLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGR 141
P+I CGDLNV+H+EID+ +P K + GFT ER +F +L+ G
Sbjct: 139 PVIVCGDLNVAHKEIDLKNP---------------KTNRKNAGFTDEERAKFTTLLESG- 182
Query: 142 LIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIEL 201
D +R+ + E++ + WS + + RIDYF+ S+ LKD++ ++ +
Sbjct: 183 FTDTFRYFYPEQEGIYSW-WSYRFKAREKNAGWRIDYFLTSDSLKDKLRGAQIHTDIL-- 239
Query: 202 EGFYGSDHCPVSLEL 216
GSDHCPV L +
Sbjct: 240 ----GSDHCPVELTI 250
>gi|210617713|ref|ZP_03291707.1| hypothetical protein CLONEX_03931 [Clostridium nexile DSM 1787]
gi|210149155|gb|EEA80164.1| hypothetical protein CLONEX_03931 [Clostridium nexile DSM 1787]
Length = 250
Score = 101 bits (252), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 69/195 (35%), Positives = 101/195 (51%), Gaps = 34/195 (17%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG----KP 82
+++ +GRVI EFE FY + Y PN+ + E R +W+ +F+ G KP
Sbjct: 84 EHDKEGRVITLEFEEFYFVTVYTPNS--QSELARLSYRIQWE---TDFLAYLKGLEQKKP 138
Query: 83 LIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRL 142
+I+ GDLNV++ EID+ +P K + GFT ER +FG +LK G
Sbjct: 139 VIFAGDLNVAYAEIDLKNP---------------KTNRKNAGFTDEERAKFGEVLKAG-F 182
Query: 143 IDAYRFLHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIEL 201
ID +R+ + E M+ +S WS + + RIDYF VSE LKDR+ ++ L
Sbjct: 183 IDTFRYFYPE--MEGIYSWWSYRFSARAKNAGWRIDYFCVSESLKDRLADAKI------L 234
Query: 202 EGFYGSDHCPVSLEL 216
GSDHCP+ L+L
Sbjct: 235 TDVMGSDHCPIELDL 249
>gi|345314093|ref|XP_001516262.2| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase-like
[Ornithorhynchus anatinus]
Length = 320
Score = 101 bits (252), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 64/192 (33%), Positives = 103/192 (53%), Gaps = 25/192 (13%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFV-LQCSGKPLIW 85
+++ +GRVI+AEFE F L+ Y PN+G R++WD+ + F+ Q + KPL+
Sbjct: 152 EHDQEGRVIVAEFEAFVLVTVYVPNSG--RGLVRLDYRQRWDQAFRRFLQAQAARKPLVL 209
Query: 86 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 145
CGDLNV+HEEID+ +P+ NK++ GFT ER+ FG +L L D+
Sbjct: 210 CGDLNVAHEEIDLRNPKG------------NKKN---AGFTPQERQGFGELLGTVDLADS 254
Query: 146 YRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 205
+R L+ F W+ + + R+DYF++S L + +++ +
Sbjct: 255 FRHLYPAAAYAYTF-WTYMMNARSKNVGWRLDYFLLSRALLPSLCDSKIRSAAL------ 307
Query: 206 GSDHCPVSLELS 217
GSDHCP++L L+
Sbjct: 308 GSDHCPITLYLA 319
>gi|340617816|ref|YP_004736269.1| exodeoxyribonuclease III [Zobellia galactanivorans]
gi|339732613|emb|CAZ95881.1| Exodeoxyribonuclease III [Zobellia galactanivorans]
Length = 256
Score = 101 bits (252), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 68/192 (35%), Positives = 99/192 (51%), Gaps = 24/192 (12%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIW 85
+++ +GR+ E+E F+L+N Y PN+G R WDK ++ + S KPLI
Sbjct: 87 EHDTEGRITHVEYEEFHLVNVYVPNSG--SGLKRLDYRSIWDKDFTAYLKKLSESKPLII 144
Query: 86 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 145
GD NV+H D+++P+ + Y NK GFT E F AILKE L+D+
Sbjct: 145 TGDFNVAHTANDLANPK-------SNY---NK----TSGFTQVEIDGFDAILKELNLVDS 190
Query: 146 YRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 205
+R LH F WS + R RIDYF+VSE + ++ + E+ +
Sbjct: 191 FRTLHPTTFHKYTF-WSMRGGARGRNVGWRIDYFLVSESIWPKVQSAEIH------DQVM 243
Query: 206 GSDHCPVSLELS 217
GSDHCP+SLE+S
Sbjct: 244 GSDHCPISLEIS 255
>gi|148225041|ref|NP_001085229.1| APEX nuclease (multifunctional DNA repair enzyme) 1 [Xenopus
laevis]
gi|47937489|gb|AAH72056.1| MGC78928 protein [Xenopus laevis]
Length = 316
Score = 101 bits (252), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 65/208 (31%), Positives = 111/208 (53%), Gaps = 27/208 (12%)
Query: 12 LCNNSSV-FHFLLSALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKR 70
LC + + + + +++ +GRVI AEF++F+++ Y PN+ R++WD
Sbjct: 133 LCKDKPLNVTYGIGIEEHDKEGRVITAEFDSFFVIAAYIPNSS--RGLVRLDYRQRWDVD 190
Query: 71 IQEFVLQC-SGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAE 129
+ ++ S KPLI CGDLNV+H+EID+ +P K + PGFT E
Sbjct: 191 FRAYLKGLDSKKPLILCGDLNVAHQEIDLKNP---------------KTNKKTPGFTPQE 235
Query: 130 RKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRI 189
R+ FG +L EG L D++R L+ +K F W+ + + R+DYF++S+ L+ +
Sbjct: 236 RQGFGELLAEGYL-DSFRELYPDKPSAYTF-WTYMMNARAKNVGWRLDYFVLSKALRPAL 293
Query: 190 IACEMQGHGIELEGFYGSDHCPVSLELS 217
C+++ GSDHCP++L ++
Sbjct: 294 CDCKIRSK------VMGSDHCPITLLMA 315
>gi|410460164|ref|ZP_11313847.1| exodeoxyribonuclease III [Bacillus azotoformans LMG 9581]
gi|409927394|gb|EKN64530.1| exodeoxyribonuclease III [Bacillus azotoformans LMG 9581]
Length = 251
Score = 101 bits (252), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 66/190 (34%), Positives = 100/190 (52%), Gaps = 26/190 (13%)
Query: 29 EPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCG 87
+ +GR I EF +FYL+N Y PN+ + + R +W+ I+ ++L+ KP+I CG
Sbjct: 86 DHEGRAITLEFPSFYLVNVYTPNS--QRDLARLSYRLEWEDNIRNYLLELDKVKPVILCG 143
Query: 88 DLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYR 147
DLNV+H+EID+ + K + G GFT ER++ +L G +D++R
Sbjct: 144 DLNVAHQEIDLKNY---------------KTNRGNSGFTDEEREKMTRLLDSG-FVDSFR 187
Query: 148 FLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGS 207
+L+ +K D WS + R RIDYFI+S+ L II ++ GS
Sbjct: 188 YLYPDKG-DVYSWWSYMNKVRERNIGWRIDYFILSKGLSSSIIDSQIHTE------IMGS 240
Query: 208 DHCPVSLELS 217
DHCPV LEL+
Sbjct: 241 DHCPVCLELN 250
>gi|339443513|ref|YP_004709518.1| hypothetical protein CXIVA_24490 [Clostridium sp. SY8519]
gi|338902914|dbj|BAK48416.1| hypothetical protein CXIVA_24490 [Clostridium sp. SY8519]
Length = 289
Score = 101 bits (252), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 62/191 (32%), Positives = 101/191 (52%), Gaps = 26/191 (13%)
Query: 28 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWC 86
++ +GRVI E+ETFY + Y PN+ + E R +W+ + ++ KP+I C
Sbjct: 124 HDQEGRVITLEYETFYFVTVYTPNS--QSELKRLDYRMEWEDDFRAYLTGLDREKPVIVC 181
Query: 87 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 146
GD+NV+H+EID+ +P K + GFT ER++F +L G ID +
Sbjct: 182 GDMNVAHQEIDLKNP---------------KTNRKNAGFTDEERQKFTELLDSG-WIDTW 225
Query: 147 RFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYG 206
R+ + +++ + WS + + RIDYF+VS+ LKDR+ ++ + G
Sbjct: 226 RYFYPDQEGVYSW-WSYRFKAREKNAGWRIDYFLVSDRLKDRLTDAKIHTEVM------G 278
Query: 207 SDHCPVSLELS 217
SDHCPV L+L+
Sbjct: 279 SDHCPVELDLN 289
>gi|335430178|ref|ZP_08557073.1| exodeoxyribonuclease III Xth [Haloplasma contractile SSD-17B]
gi|334888594|gb|EGM26891.1| exodeoxyribonuclease III Xth [Haloplasma contractile SSD-17B]
Length = 251
Score = 101 bits (252), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 67/202 (33%), Positives = 107/202 (52%), Gaps = 41/202 (20%)
Query: 23 LSALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQR---RRKWDKRIQEFVLQC- 78
+ KY +GR+I EF+ F+ + Y PN+ + S R R +++ + ++ +
Sbjct: 80 IDGSKYNDEGRIITLEFKNFFFVTAYVPNS-----QRSLARLDYRMEFEDDFRAYLKKLD 134
Query: 79 SGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILK 138
S KP+I CGDLNV+H EID+++P K + GFTI ER+++ ++L
Sbjct: 135 SLKPVIMCGDLNVAHREIDLTNP---------------KNNEKNAGFTIEERRKYQSLLD 179
Query: 139 EGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELK----DRIIACEM 194
EG D+YR+LH EK +S+ N + R RIDYF++S +L+ D II +
Sbjct: 180 EG-FTDSYRYLHPEKVEYSWWSYMFN--ARKRNIGWRIDYFVISNKLRGQLNDSIIHTQT 236
Query: 195 QGHGIELEGFYGSDHCPVSLEL 216
+ GSDHCP+SL++
Sbjct: 237 E----------GSDHCPISLDI 248
>gi|251779069|ref|ZP_04821989.1| exodeoxyribonuclease III [Clostridium botulinum E1 str. 'BoNT E
Beluga']
gi|243083384|gb|EES49274.1| exodeoxyribonuclease III [Clostridium botulinum E1 str. 'BoNT E
Beluga']
Length = 251
Score = 101 bits (252), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 64/189 (33%), Positives = 102/189 (53%), Gaps = 26/189 (13%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIW 85
+++ +GRV+ EFE FYL+N Y PN+ +++ R W+ + ++ + + K +I
Sbjct: 85 EHDKEGRVLTLEFEEFYLVNVYTPNS--QQKLARIDYRMAWENDFRHYLNELNKDKSVIV 142
Query: 86 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 145
CGDLNV+H+EID+ +P K + GF+ ER++FG +LK G ID
Sbjct: 143 CGDLNVAHKEIDLKNP---------------KNNRNNAGFSDEEREKFGELLKSG-FIDT 186
Query: 146 YRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 205
YR+ + K+ + WS + RIDYF+VS++ +DR++ + IE
Sbjct: 187 YRYFYPGKEGAYSW-WSYRFNARANNAGWRIDYFLVSKDFEDRLVDANIHTQ-IE----- 239
Query: 206 GSDHCPVSL 214
GSDHCPV L
Sbjct: 240 GSDHCPVEL 248
>gi|420446253|ref|ZP_14945154.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-42]
gi|393059442|gb|EJB60322.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-42]
Length = 236
Score = 101 bits (252), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 65/191 (34%), Positives = 98/191 (51%), Gaps = 26/191 (13%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIW 85
+++ +GRVI EFE+FYL+N Y PN+ ++ + R W+ ++F+ KP+I
Sbjct: 70 EHDKEGRVITCEFESFYLVNVYTPNS--QQALSRLSYRMSWEVEFKKFLKALELKKPVIV 127
Query: 86 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 145
CGDLNV+H EID+ +P K + GF+ ERK+F +L G ID
Sbjct: 128 CGDLNVAHNEIDLENP---------------KTNRKNAGFSDEERKKFSELLNAG-FIDT 171
Query: 146 YRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 205
+R+ + K+ + WS + + RIDYF+ S LK R+ + +
Sbjct: 172 FRYFYPNKEKAYTW-WSYMQQARDKDIGWRIDYFLCSNPLKTRL------KDALIYKDIL 224
Query: 206 GSDHCPVSLEL 216
GSDHCPV LEL
Sbjct: 225 GSDHCPVGLEL 235
>gi|398309083|ref|ZP_10512557.1| exodeoxyribonuclease III [Bacillus mojavensis RO-H-1]
Length = 252
Score = 101 bits (251), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 65/193 (33%), Positives = 101/193 (52%), Gaps = 28/193 (14%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIW 85
+++ +GRVI EFE Y++ Y PN K R +W++ + F+L+ K P+I
Sbjct: 85 EHDQEGRVITLEFENMYVMTVYTPNA--KRGLERIDYRLQWEEALLAFILELDKKKPVIL 142
Query: 86 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 145
CGDLNV+H+EID+ +P K + GF+ ER F L+ G ID+
Sbjct: 143 CGDLNVAHQEIDLKNP---------------KANRNNAGFSDQERGAFTRFLEAG-FIDS 186
Query: 146 YRFLHKEKDMDCGFSWSGNPIG-KYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGF 204
+R+L+ D++ +SW G + R R+DYF+VSE LK +I ++ +
Sbjct: 187 FRYLY--PDLEGAYSWWSYRAGARDRNIGWRLDYFVVSERLKGQIEDAKISAQVL----- 239
Query: 205 YGSDHCPVSLELS 217
GSDHCPV L ++
Sbjct: 240 -GSDHCPVELTIN 251
>gi|358065851|ref|ZP_09152385.1| exodeoxyribonuclease [Clostridium hathewayi WAL-18680]
gi|356695714|gb|EHI57339.1| exodeoxyribonuclease [Clostridium hathewayi WAL-18680]
Length = 251
Score = 101 bits (251), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 65/192 (33%), Positives = 103/192 (53%), Gaps = 26/192 (13%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIW 85
+++ +GRVI AEF +Y++ Y PN+ K+ R +W+ ++ KP+I+
Sbjct: 85 EHDKEGRVITAEFPEYYVVTCYTPNS--KDGLARLPYRMEWEDAFLAYLKGLEEKKPVIF 142
Query: 86 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 145
CGDLNV+H+EID+ +P K + GF+ ER +F +L G ID
Sbjct: 143 CGDLNVAHQEIDLKNP---------------KTNRKNAGFSDEERGKFSDVLAAG-FIDT 186
Query: 146 YRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 205
YR+ + +K + WS + + RIDYF VSE LKDR+++ ++ +E++
Sbjct: 187 YRYFYPDKTEVYSW-WSYRFSARAKNAGWRIDYFCVSEALKDRLVSADIH---MEVQ--- 239
Query: 206 GSDHCPVSLELS 217
GSDHCPV L +S
Sbjct: 240 GSDHCPVELVIS 251
>gi|329769257|ref|ZP_08260674.1| exodeoxyribonuclease [Gemella sanguinis M325]
gi|328839251|gb|EGF88834.1| exodeoxyribonuclease [Gemella sanguinis M325]
Length = 254
Score = 101 bits (251), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 62/195 (31%), Positives = 101/195 (51%), Gaps = 28/195 (14%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIW 85
+++ +GRVI E++ F+ + Y PN+G E + R W+ ++++L + K +I
Sbjct: 84 EHDTEGRVITLEYDNFFFITVYTPNSG--SELKRLEYRMSWEDDFKDYLLTLNKDKGVIV 141
Query: 86 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 145
CGDLNV+H EID+ +P K + GFT ER++F +L G ID
Sbjct: 142 CGDLNVAHTEIDLKNP---------------KTNVKNAGFTPEEREKFTKLLDAG-FIDT 185
Query: 146 YRFLHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGF 204
+R+ + D+ +S WS + RIDYF+VS++LK +++ ++
Sbjct: 186 FRYFN--PDLTGAYSWWSYRFNARKNNSGWRIDYFLVSKDLKKYLVSAKIHND------I 237
Query: 205 YGSDHCPVSLELSEA 219
+GSDHCPV L L E
Sbjct: 238 FGSDHCPVELVLDET 252
>gi|224543695|ref|ZP_03684234.1| hypothetical protein CATMIT_02905 [Catenibacterium mitsuokai DSM
15897]
gi|224523348|gb|EEF92453.1| exodeoxyribonuclease III [Catenibacterium mitsuokai DSM 15897]
Length = 248
Score = 101 bits (251), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 67/190 (35%), Positives = 94/190 (49%), Gaps = 26/190 (13%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGKPLIWC 86
+Y+ +GRVI EFE +Y + Y PN+ K+E R +W+ + L KP+I C
Sbjct: 84 EYDQEGRVITLEFEDYYFVPCYTPNS--KKELARIDYRMEWEDAFLAY-LDALNKPVILC 140
Query: 87 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 146
GDLNV+H EID+ +P + GF+ ER + +L G ID +
Sbjct: 141 GDLNVAHHEIDLKNP---------------SSNHHNAGFSDQERSKMTELLSHG-YIDTF 184
Query: 147 RFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYG 206
R+L+ +K D WS + R RIDYFIVSE LK+RI + G
Sbjct: 185 RYLYPDKK-DAYTWWSYMFKSRERNAGWRIDYFIVSESLKERI------KESLIYSDILG 237
Query: 207 SDHCPVSLEL 216
SDHCP+ LE+
Sbjct: 238 SDHCPIGLEM 247
>gi|402875487|ref|XP_003901536.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase [Papio anubis]
gi|402875489|ref|XP_003901537.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase [Papio anubis]
Length = 318
Score = 101 bits (251), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 64/192 (33%), Positives = 106/192 (55%), Gaps = 25/192 (13%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQ-CSGKPLIW 85
+++ +GRVI+AEF++F L+ TY PN G + R++WD+ ++F+ S KPL+
Sbjct: 150 EHDQEGRVIVAEFDSFVLVTTYVPNAG--RGLVRLEYRQRWDEAFRKFLKGLASRKPLVL 207
Query: 86 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 145
CGDLNV+HEEID+ +P+ NK++ GFT ER+ FG +L+ L D+
Sbjct: 208 CGDLNVAHEEIDLRNPKG------------NKKN---AGFTPQERQGFGELLQAVPLADS 252
Query: 146 YRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 205
+R L+ F W+ + + R+DYF++S L + +++ +
Sbjct: 253 FRHLYPNTPYAYTF-WTYMMNARSKNVGWRLDYFLLSHSLLPALCDSKIRSKAL------ 305
Query: 206 GSDHCPVSLELS 217
GSDHCP++L L+
Sbjct: 306 GSDHCPITLYLA 317
>gi|309804045|ref|ZP_07698126.1| putative exodeoxyribonuclease III [Lactobacillus iners LactinV
11V1-d]
gi|309804894|ref|ZP_07698956.1| putative exodeoxyribonuclease III [Lactobacillus iners LactinV
09V1-c]
gi|309807812|ref|ZP_07701744.1| putative exodeoxyribonuclease III [Lactobacillus iners LactinV
01V1-a]
gi|309809734|ref|ZP_07703588.1| putative exodeoxyribonuclease III [Lactobacillus iners SPIN
2503V10-D]
gi|308163813|gb|EFO66079.1| putative exodeoxyribonuclease III [Lactobacillus iners LactinV
11V1-d]
gi|308165833|gb|EFO68054.1| putative exodeoxyribonuclease III [Lactobacillus iners LactinV
09V1-c]
gi|308168914|gb|EFO71000.1| putative exodeoxyribonuclease III [Lactobacillus iners LactinV
01V1-a]
gi|308169913|gb|EFO71952.1| putative exodeoxyribonuclease III [Lactobacillus iners SPIN
2503V10-D]
Length = 168
Score = 101 bits (251), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 66/191 (34%), Positives = 95/191 (49%), Gaps = 29/191 (15%)
Query: 29 EPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWCG 87
+ +GR+I EF+TFYL Y PN+G E R WD + QE++ + KP+I G
Sbjct: 2 DQEGRIITLEFDTFYLTQVYTPNSG--NELKRLADREIWDTKYQEYLAKLDQNKPVIASG 59
Query: 88 DLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYR 147
D NV+H+EID+ HPE + GFT ERK F +L G ID +R
Sbjct: 60 DYNVAHQEIDLKHPE---------------TNHHNAGFTDEERKGFSKLLSLG-FIDTFR 103
Query: 148 FLHKEKDMDCGFSWSGNPI--GKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 205
+++ D+ +SW I K RIDY++VS+ L D+I +M G
Sbjct: 104 YIN--GDITDVYSWWSQRIRTSKTNNAGWRIDYYLVSQRLADKIEQSKMIDTGDR----- 156
Query: 206 GSDHCPVSLEL 216
DHCP+ L++
Sbjct: 157 -KDHCPILLKI 166
>gi|325854960|ref|ZP_08171676.1| exodeoxyribonuclease III [Prevotella denticola CRIS 18C-A]
gi|325483938|gb|EGC86878.1| exodeoxyribonuclease III [Prevotella denticola CRIS 18C-A]
Length = 249
Score = 101 bits (251), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 64/192 (33%), Positives = 101/192 (52%), Gaps = 29/192 (15%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIW 85
+++ +GRVI E + FYL+ Y PN+ ++ R KW+K Q+++ + KP++
Sbjct: 84 EHDHEGRVITLEMDDFYLVTVYTPNS--QDGLRRLDYRMKWEKDFQDYLHRLDRKKPVVV 141
Query: 86 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 145
CGD+NV+HEEID+ +P K + GFT ER++ +L G ID
Sbjct: 142 CGDMNVAHEEIDIKNP---------------KTNRRNAGFTDEEREKMTQLLDSG-FIDT 185
Query: 146 YRFLHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGF 204
+R L+ E+ +S WS + R RIDYF++SE L+DR+ ++
Sbjct: 186 FRTLYPEQ---VTYSWWSYRFRARERNTGWRIDYFLISERLRDRLEDAKIHTE------I 236
Query: 205 YGSDHCPVSLEL 216
GSDHCPV ++L
Sbjct: 237 MGSDHCPVEVDL 248
>gi|417409485|gb|JAA51243.1| Putative exodeoxyribonuclease iii, partial [Desmodus rotundus]
Length = 301
Score = 101 bits (251), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 63/192 (32%), Positives = 105/192 (54%), Gaps = 25/192 (13%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQ-CSGKPLIW 85
+++ +GRVI+AE++ F L+ Y PN G + R++WD+ ++F+ S KPL+
Sbjct: 133 EHDQEGRVIVAEYDAFVLVTAYVPNAG--RGLVRLEYRQRWDEAFRKFLKGVASHKPLVL 190
Query: 86 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 145
CGDLNV+HEEID+ +P+ NK++ GFT ER+ FG +L+ L+D+
Sbjct: 191 CGDLNVAHEEIDLRNPKG------------NKKN---AGFTPQERQGFGELLQAVPLVDS 235
Query: 146 YRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 205
+R L+ F W+ + + R+DYF+VS L + +++ +
Sbjct: 236 FRHLYPNTAYAYTF-WTYMMNARSKNVGWRLDYFLVSHSLLPALCDSKIRSKAL------ 288
Query: 206 GSDHCPVSLELS 217
GSDHCP++L L+
Sbjct: 289 GSDHCPITLYLA 300
>gi|384475785|ref|NP_001245038.1| DNA-(apurinic or apyrimidinic site) lyase [Macaca mulatta]
gi|90078218|dbj|BAE88789.1| unnamed protein product [Macaca fascicularis]
gi|355693074|gb|EHH27677.1| hypothetical protein EGK_17940 [Macaca mulatta]
gi|355767431|gb|EHH62612.1| hypothetical protein EGM_21005 [Macaca fascicularis]
gi|383417983|gb|AFH32205.1| DNA-(apurinic or apyrimidinic site) lyase [Macaca mulatta]
gi|384946780|gb|AFI36995.1| DNA-(apurinic or apyrimidinic site) lyase [Macaca mulatta]
gi|384946782|gb|AFI36996.1| DNA-(apurinic or apyrimidinic site) lyase [Macaca mulatta]
gi|384946784|gb|AFI36997.1| DNA-(apurinic or apyrimidinic site) lyase [Macaca mulatta]
Length = 318
Score = 101 bits (251), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 64/192 (33%), Positives = 106/192 (55%), Gaps = 25/192 (13%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQ-CSGKPLIW 85
+++ +GRVI+AEF++F L+ TY PN G + R++WD+ ++F+ S KPL+
Sbjct: 150 EHDQEGRVIVAEFDSFVLVTTYVPNAG--RGLVRLEYRQRWDEAFRKFLKGLASRKPLVL 207
Query: 86 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 145
CGDLNV+HEEID+ +P+ NK++ GFT ER+ FG +L+ L D+
Sbjct: 208 CGDLNVAHEEIDLRNPKG------------NKKN---AGFTPQERQGFGELLQAVPLADS 252
Query: 146 YRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 205
+R L+ F W+ + + R+DYF++S L + +++ +
Sbjct: 253 FRHLYPNTPYAYTF-WTYMMNARSKNVGWRLDYFLLSHSLLPALCDSKIRSKAL------ 305
Query: 206 GSDHCPVSLELS 217
GSDHCP++L L+
Sbjct: 306 GSDHCPITLYLA 317
>gi|153812982|ref|ZP_01965650.1| hypothetical protein RUMOBE_03389 [Ruminococcus obeum ATCC 29174]
gi|149830929|gb|EDM86019.1| exodeoxyribonuclease III [Ruminococcus obeum ATCC 29174]
Length = 252
Score = 101 bits (251), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 65/191 (34%), Positives = 101/191 (52%), Gaps = 26/191 (13%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIW 85
+++ +GRVI EF+ FY + Y PN+ + E + R +W++ ++L+ KP+I
Sbjct: 84 EHDKEGRVITLEFKEFYFVTVYTPNS--QSELRRLEYRMEWERDFLAYLLKLQESKPVIC 141
Query: 86 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 145
CGDLNV+HEEID+ +P K + GFT ER F +L+ G ID
Sbjct: 142 CGDLNVAHEEIDLKNP---------------KTNRKNAGFTDEERACFTKVLESG-FIDT 185
Query: 146 YRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 205
+R+ + +K+ + WS + + RIDYFI S LK++ +QG I E
Sbjct: 186 FRYFYPDKEGIYSW-WSYRFKAREKNAGWRIDYFITSPSLKEK-----LQGAAIHTE-IM 238
Query: 206 GSDHCPVSLEL 216
GSDHCP+ L++
Sbjct: 239 GSDHCPIELDI 249
>gi|357041996|ref|ZP_09103703.1| exodeoxyribonuclease [Prevotella histicola F0411]
gi|355370010|gb|EHG17399.1| exodeoxyribonuclease [Prevotella histicola F0411]
Length = 249
Score = 101 bits (251), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 63/192 (32%), Positives = 101/192 (52%), Gaps = 29/192 (15%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIW 85
+++ +GRVI E + F+L+ Y PN+ ++ + R KW+ Q ++ + K P+I
Sbjct: 84 EHDHEGRVITLEMDDFFLVTVYTPNS--QDGLRRLEYRMKWEDDFQAYLHKLDAKKPVIV 141
Query: 86 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 145
CGD+NV+HEEID+ +P K + GFT ER++ +L G ID
Sbjct: 142 CGDMNVAHEEIDIKNP---------------KTNRRNAGFTDEEREKMTQLLNNG-FIDT 185
Query: 146 YRFLHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGF 204
+R L+ E+ +S WS + R RIDYF++S+ LKDR++ ++
Sbjct: 186 FRSLYPEQ---VTYSWWSYRFRARERNTGWRIDYFLISDRLKDRLVDAKIHTE------I 236
Query: 205 YGSDHCPVSLEL 216
GSDHCPV ++L
Sbjct: 237 MGSDHCPVEVDL 248
>gi|336114106|ref|YP_004568873.1| exodeoxyribonuclease III [Bacillus coagulans 2-6]
gi|335367536|gb|AEH53487.1| exodeoxyribonuclease III [Bacillus coagulans 2-6]
Length = 251
Score = 101 bits (251), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 64/189 (33%), Positives = 101/189 (53%), Gaps = 26/189 (13%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIW 85
+ EP+GR++ E+E FYL+N Y PN+ + + R +W+ R++ ++ KP+I
Sbjct: 84 RTEPEGRILTLEYEDFYLVNVYTPNS--QRDLARLGYRLEWENRMRAYLTDLDKKKPVIV 141
Query: 86 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 145
CGD+NV+H+EID+ + K + G GFT ER + +L G ID+
Sbjct: 142 CGDMNVAHQEIDLKNA---------------KSNIGNSGFTAEERDKMTGLLNSG-FIDS 185
Query: 146 YRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 205
+R+ + E++ + WS + R RIDYF+VS+ L R ++G G+ E
Sbjct: 186 FRYFYPEREGAYTW-WSYMNKVRERNIGWRIDYFLVSKRLAGR-----LKGAGMYPE-IM 238
Query: 206 GSDHCPVSL 214
GSDHCPV L
Sbjct: 239 GSDHCPVFL 247
>gi|332654136|ref|ZP_08419880.1| exodeoxyribonuclease III [Ruminococcaceae bacterium D16]
gi|332517222|gb|EGJ46827.1| exodeoxyribonuclease III [Ruminococcaceae bacterium D16]
Length = 252
Score = 101 bits (251), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 66/192 (34%), Positives = 105/192 (54%), Gaps = 28/192 (14%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIW 85
+++ +GR+I E+E FYL+ Y PN+ + E R +W+ ++ ++++ KP+I+
Sbjct: 85 EHDHEGRLITLEYEKFYLVCCYTPNS--QSELKRLDYRMEWEDDLRAYLMELDKVKPVIY 142
Query: 86 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 145
CGDLNV+H EID+ +P+ ++N GFT ER++ +L G D
Sbjct: 143 CGDLNVAHREIDLKNPK---TNRMNA------------GFTDQEREKMTTLLSSG-FTDT 186
Query: 146 YRFLHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGF 204
+RFL+ D++ +S WS + + RIDYFIVS+ L++ I E+ L
Sbjct: 187 FRFLY--PDLEGVYSWWSYRFQARKKNAGWRIDYFIVSDRLQNAIKRAEI------LTQV 238
Query: 205 YGSDHCPVSLEL 216
GSDHCPV LEL
Sbjct: 239 EGSDHCPVLLEL 250
>gi|381180194|ref|ZP_09889037.1| exodeoxyribonuclease III Xth [Treponema saccharophilum DSM 2985]
gi|380767904|gb|EIC01900.1| exodeoxyribonuclease III Xth [Treponema saccharophilum DSM 2985]
Length = 253
Score = 101 bits (251), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 66/191 (34%), Positives = 97/191 (50%), Gaps = 26/191 (13%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIW 85
+++ +GRVI E+ F+L+ Y PN+ + E R W+ + F++ K P+I
Sbjct: 86 QHDTEGRVITLEYADFFLVTVYTPNS--QNELKRLDYRMAWEDDFRNFLVSLKAKKPVIV 143
Query: 86 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 145
CGD+NV+HEEID+ +P +A + N GFT ER + +L G ID
Sbjct: 144 CGDMNVAHEEIDIKNP---SANRRNA------------GFTDEERAKMTELLASG-FIDT 187
Query: 146 YRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 205
+R L+ E D WS + R RIDYF+VS+++K RI ++
Sbjct: 188 FRTLNPELK-DAYSWWSYRFHARERNAGWRIDYFLVSDDIKPRISDAKIHA------DIL 240
Query: 206 GSDHCPVSLEL 216
GSDHCPV LEL
Sbjct: 241 GSDHCPVELEL 251
>gi|331085596|ref|ZP_08334680.1| exodeoxyribonuclease [Lachnospiraceae bacterium 9_1_43BFAA]
gi|330407483|gb|EGG86985.1| exodeoxyribonuclease [Lachnospiraceae bacterium 9_1_43BFAA]
Length = 250
Score = 101 bits (251), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 65/191 (34%), Positives = 98/191 (51%), Gaps = 26/191 (13%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIW 85
+++ +GRVI EFE FY + Y PN+ + E R +W+ +++ + K P+I+
Sbjct: 84 EHDKEGRVITLEFEEFYFVTVYTPNS--QNELARLDYRMQWETEFLKYLKKLEAKKPVIF 141
Query: 86 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 145
CGDLNV+H EID+ +P K + GFT ER +F +L G ID
Sbjct: 142 CGDLNVAHREIDLKNP---------------KTNQKNAGFTDEERGKFTELLSAG-FIDT 185
Query: 146 YRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 205
+R+ + E++ + WS + + RIDYF VSE LKDR+ ++ L
Sbjct: 186 FRYFYPEQEGIYSW-WSYRFSARAKNAGWRIDYFCVSECLKDRLRDAKI------LTDVM 238
Query: 206 GSDHCPVSLEL 216
GSDHCPV L+
Sbjct: 239 GSDHCPVELDF 249
>gi|349603618|gb|AEP99410.1| DNA-(apurinic or apyrimidinic site) lyase-like protein, partial
[Equus caballus]
Length = 171
Score = 101 bits (251), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 63/192 (32%), Positives = 104/192 (54%), Gaps = 25/192 (13%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQ-CSGKPLIW 85
+++ +GRVI+AEF+ F L+ Y PN G + R++WD+ ++F+ S KPL+
Sbjct: 3 EHDQEGRVIVAEFDAFVLVTAYVPNAG--RGLVRLEYRQRWDEAFRKFLKGLASRKPLVL 60
Query: 86 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 145
CGDLNV+HEEID+ +P+ NK++ GFT ER+ FG +L+ L D+
Sbjct: 61 CGDLNVAHEEIDLRNPK------------GNKKN---AGFTPQERQGFGELLQAVPLADS 105
Query: 146 YRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 205
+R L+ F W+ + + R+DYF++S L + +++ +
Sbjct: 106 FRHLYPNTAYAYTF-WTYMMNARSKNVGWRLDYFLLSHSLLPALCDSKIRSKAL------ 158
Query: 206 GSDHCPVSLELS 217
GSDHCP++L L+
Sbjct: 159 GSDHCPITLYLA 170
>gi|6753086|ref|NP_033817.1| DNA-(apurinic or apyrimidinic site) lyase [Mus musculus]
gi|113985|sp|P28352.2|APEX1_MOUSE RecName: Full=DNA-(apurinic or apyrimidinic site) lyase; AltName:
Full=APEX nuclease; Short=APEN; AltName:
Full=Apurinic-apyrimidinic endonuclease 1; Short=AP
endonuclease 1; AltName: Full=REF-1; AltName: Full=Redox
factor-1; Contains: RecName: Full=DNA-(apurinic or
apyrimidinic site) lyase, mitochondrial
gi|220337|dbj|BAA14382.1| APEX nuclease precursor [Mus musculus]
gi|533108|gb|AAC13769.1| apurinic/apyrimidinic endonuclease [Mus musculus]
gi|533329|dbj|BAA07270.1| APEX nuclease [Mus musculus]
gi|12850573|dbj|BAB28774.1| unnamed protein product [Mus musculus]
gi|30851442|gb|AAH52401.1| Apurinic/apyrimidinic endonuclease 1 [Mus musculus]
gi|148688888|gb|EDL20835.1| apurinic/apyrimidinic endonuclease 1 [Mus musculus]
Length = 317
Score = 101 bits (251), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 64/192 (33%), Positives = 105/192 (54%), Gaps = 25/192 (13%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQ-CSGKPLIW 85
+++ +GRVI+AEFE+F L+ Y PN G + R++WD+ ++F+ S KPL+
Sbjct: 149 EHDQEGRVIVAEFESFVLVTAYVPNAG--RGLVRLEYRQRWDEAFRKFLKDLASRKPLVL 206
Query: 86 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 145
CGDLNV+HEEID+ +P+ NK++ GFT ER+ FG +L+ L D+
Sbjct: 207 CGDLNVAHEEIDLRNPKG------------NKKN---AGFTPQERQGFGELLQAVPLADS 251
Query: 146 YRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 205
+R L+ F W+ + + R+DYF++S L + +++ +
Sbjct: 252 FRHLYPNTAYAYTF-WTYMMNARSKNVGWRLDYFLLSHSLLPALCDSKIRSKAL------ 304
Query: 206 GSDHCPVSLELS 217
GSDHCP++L L+
Sbjct: 305 GSDHCPITLYLA 316
>gi|188588613|ref|YP_001921245.1| exodeoxyribonuclease III [Clostridium botulinum E3 str. Alaska E43]
gi|188498894|gb|ACD52030.1| exodeoxyribonuclease III [Clostridium botulinum E3 str. Alaska E43]
Length = 251
Score = 101 bits (251), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 63/189 (33%), Positives = 103/189 (54%), Gaps = 26/189 (13%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIW 85
+++ +GRV+ EFE FYL+N Y PN+ +++ R W+ ++++ + + K +I
Sbjct: 85 EHDKEGRVLTLEFEEFYLVNVYTPNS--QQKLARIDYRMAWENDFRDYLNELNKDKSVIV 142
Query: 86 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 145
CGDLNV+H+EID+ +P K + GF+ ER++F +LK G ID
Sbjct: 143 CGDLNVAHKEIDLKNP---------------KNNRNNAGFSDEEREKFDELLKSG-FIDT 186
Query: 146 YRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 205
YR+ + +K+ + WS + RIDYF+VS++ +DR++ + IE
Sbjct: 187 YRYFYPDKEGAYSW-WSYRFNARANNAGWRIDYFLVSKDFEDRLVDANIHTQ-IE----- 239
Query: 206 GSDHCPVSL 214
GSDHCPV L
Sbjct: 240 GSDHCPVEL 248
>gi|427413104|ref|ZP_18903296.1| exodeoxyribonuclease III (xth) [Veillonella ratti ACS-216-V-Col6b]
gi|425715920|gb|EKU78906.1| exodeoxyribonuclease III (xth) [Veillonella ratti ACS-216-V-Col6b]
Length = 251
Score = 101 bits (251), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 65/194 (33%), Positives = 102/194 (52%), Gaps = 30/194 (15%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIW 85
+++ +GRVI AE++ FYL+ Y PN+ + E + R W+ + ++L+ K P+I
Sbjct: 84 EHDQEGRVITAEYDNFYLVTCYTPNS--QRELARLEYRMTWEDAFRAYLLELDAKKPVIL 141
Query: 86 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 145
CGDLNV+H EID+ +P K + GFT ER++ +L G D
Sbjct: 142 CGDLNVAHNEIDLKNP---------------KTNRKNAGFTDEEREKMTELLNAG-FTDT 185
Query: 146 YRFLHKEKDMDCGFSWSGNPIGKYRGKRM--RIDYFIVSEELKDRIIACEMQGHGIELEG 203
+R L+ D+ +SW + +GK R + + RIDYFI S L I+ ++
Sbjct: 186 FRKLY--PDVTDAYSW-WSYMGKARDRNVGWRIDYFITSARLDKDIVEAKIH------PD 236
Query: 204 FYGSDHCPVSLELS 217
+GSDHCPV LE++
Sbjct: 237 IFGSDHCPVELEIN 250
>gi|229816298|ref|ZP_04446607.1| hypothetical protein COLINT_03350 [Collinsella intestinalis DSM
13280]
gi|229808149|gb|EEP43942.1| hypothetical protein COLINT_03350 [Collinsella intestinalis DSM
13280]
Length = 280
Score = 101 bits (251), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 63/190 (33%), Positives = 96/190 (50%), Gaps = 30/190 (15%)
Query: 31 DGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC---SGKPLIWCG 87
+GRV EFE F+ ++ Y PN + E R WD + F+ +GKP++ CG
Sbjct: 115 EGRVCALEFERFWFVDVYTPNA--QGELARLSTRMAWDDAYRAFLRSLEDETGKPVVTCG 172
Query: 88 DLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYR 147
D NV+H EID+ +P K + G GF+ ER +FG +L G D +R
Sbjct: 173 DFNVAHNEIDLKNP---------------KSNRGNAGFSDEERAKFGELLDAG-YTDTFR 216
Query: 148 FLHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYG 206
+ +++ +S WS + RIDYF+VS+ + DR+ AC ++ +G
Sbjct: 217 AAN--PNLEGAYSWWSYRFNARKNNAGWRIDYFLVSDAIADRVRACGIRND------IFG 268
Query: 207 SDHCPVSLEL 216
SDHCPV+LE+
Sbjct: 269 SDHCPVTLEI 278
>gi|350268411|ref|YP_004879717.1| exodeoxyribonuclease [Oscillibacter valericigenes Sjm18-20]
gi|348593251|dbj|BAK97211.1| exodeoxyribonuclease [Oscillibacter valericigenes Sjm18-20]
Length = 250
Score = 100 bits (250), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 66/192 (34%), Positives = 100/192 (52%), Gaps = 29/192 (15%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIW 85
+Y +GRVI AEFE FYL+ Y PN ++E R +W+ ++++ + KP++
Sbjct: 84 EYRHEGRVITAEFEEFYLVCCYTPNA--QDELRRIDYRMRWEDDFRDYLRELDRVKPVVL 141
Query: 86 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 145
CGDLNV+HEEID+ +P K + G GF+ ER + +L G D
Sbjct: 142 CGDLNVAHEEIDLKNP---------------KTNRGHAGFSDQERGKMTELLSTG-FSDT 185
Query: 146 YRFLHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGF 204
+R L+ EK +S WS + + RIDYFIVS +++++ + +
Sbjct: 186 FRTLYPEK---IAYSWWSYRFRAREKNAGWRIDYFIVSRRFQEKVV------DSLICDQV 236
Query: 205 YGSDHCPVSLEL 216
+GSDHCPV LEL
Sbjct: 237 FGSDHCPVGLEL 248
>gi|13162337|ref|NP_077062.1| DNA-(apurinic or apyrimidinic site) lyase [Rattus norvegicus]
gi|1168468|sp|P43138.2|APEX1_RAT RecName: Full=DNA-(apurinic or apyrimidinic site) lyase; AltName:
Full=APEX nuclease; Short=APEN; AltName:
Full=Apurinic-apyrimidinic endonuclease 1; Short=AP
endonuclease 1; AltName: Full=REF-1; AltName: Full=Redox
factor-1; Contains: RecName: Full=DNA-(apurinic or
apyrimidinic site) lyase, mitochondrial
gi|11878235|gb|AAG40859.1|AF309114_1 nuclease APEX [Rattus norvegicus]
gi|624915|dbj|BAA07938.1| APEX nuclease [Rattus norvegicus]
gi|5360709|dbj|BAA82124.1| Apex nuclease [Rattus norvegicus]
gi|50926078|gb|AAH78816.1| APEX nuclease (multifunctional DNA repair enzyme) 1 [Rattus
norvegicus]
gi|149033628|gb|EDL88426.1| apurinic/apyrimidinic endonuclease 1, isoform CRA_a [Rattus
norvegicus]
Length = 317
Score = 100 bits (250), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 64/192 (33%), Positives = 105/192 (54%), Gaps = 25/192 (13%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQ-CSGKPLIW 85
+++ +GRVI+AEFE+F L+ Y PN G + R++WD+ ++F+ S KPL+
Sbjct: 149 EHDQEGRVIVAEFESFILVTAYVPNAG--RGLVRLEYRQRWDEAFRKFLKDLASRKPLVL 206
Query: 86 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 145
CGDLNV+HEEID+ +P+ NK++ GFT ER+ FG +L+ L D+
Sbjct: 207 CGDLNVAHEEIDLRNPKG------------NKKN---AGFTPQERQGFGEMLQAVPLADS 251
Query: 146 YRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 205
+R L+ F W+ + + R+DYF++S L + +++ +
Sbjct: 252 FRHLYPNTAYAYTF-WTYMMNARSKNVGWRLDYFLLSHSLLPALCDSKIRSKAL------ 304
Query: 206 GSDHCPVSLELS 217
GSDHCP++L L+
Sbjct: 305 GSDHCPITLYLA 316
>gi|421077946|ref|ZP_15538906.1| exodeoxyribonuclease III Xth [Pelosinus fermentans JBW45]
gi|392523930|gb|EIW47096.1| exodeoxyribonuclease III Xth [Pelosinus fermentans JBW45]
Length = 250
Score = 100 bits (250), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 63/195 (32%), Positives = 101/195 (51%), Gaps = 26/195 (13%)
Query: 23 LSALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GK 81
L+ +++ +GR+I EFE F+L+N Y PN+ K E R +W+ + +++ + K
Sbjct: 80 LNIEEHDQEGRLITLEFENFFLVNVYTPNS--KRELLRLDYRMRWEDEFRTYLITLNQSK 137
Query: 82 PLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGR 141
P+I CGD+NV+H+EID+ +P K + GFT ER + A+L+ G
Sbjct: 138 PVIICGDINVAHQEIDIKNP---------------KTNRRNAGFTDEERDKMTALLEAG- 181
Query: 142 LIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIEL 201
D +R ++ +K +D WS + R RIDYF+VS L++ I +
Sbjct: 182 FTDTFRHIYPDK-IDAYTWWSYMMNARARNIGWRIDYFLVSNTLREAIKEATI------Y 234
Query: 202 EGFYGSDHCPVSLEL 216
GSDHCP+ LE+
Sbjct: 235 PDVMGSDHCPIGLEI 249
>gi|420456020|ref|ZP_14954844.1| exodeoxyribonuclease III [Helicobacter pylori Hp A-14]
gi|393071140|gb|EJB71927.1| exodeoxyribonuclease III [Helicobacter pylori Hp A-14]
Length = 250
Score = 100 bits (250), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 64/191 (33%), Positives = 98/191 (51%), Gaps = 26/191 (13%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIW 85
+++ +GRVI EFE+FYL+N Y PN+ ++ + R W+ ++F+ KP+I
Sbjct: 84 EHDKEGRVITCEFESFYLVNVYTPNS--QQALSRLSYRMSWEVEFKKFLKALELKKPVIV 141
Query: 86 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 145
CGDLNV+H EID+ +P K + GF+ ER++F +L G ID
Sbjct: 142 CGDLNVAHNEIDLENP---------------KTNRKNAGFSDEEREKFNELLNAG-FIDT 185
Query: 146 YRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 205
+R+ + K+ + WS + + RIDYF+ S LK R+ + +
Sbjct: 186 FRYFYPNKEKAYTW-WSYMQQARNKNIGWRIDYFLCSNPLKTRL------KDALIYKDIL 238
Query: 206 GSDHCPVSLEL 216
GSDHCPV LEL
Sbjct: 239 GSDHCPVGLEL 249
>gi|375091411|ref|ZP_09737704.1| exodeoxyribonuclease III (xth) [Helcococcus kunzii ATCC 51366]
gi|374563511|gb|EHR34824.1| exodeoxyribonuclease III (xth) [Helcococcus kunzii ATCC 51366]
Length = 250
Score = 100 bits (250), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 69/193 (35%), Positives = 108/193 (55%), Gaps = 30/193 (15%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIW 85
+++ +GRVI E+E FYL+ Y PN+ K R+ W+ + ++L+ + KP+I
Sbjct: 84 EHDKEGRVITLEYEDFYLVTCYTPNS--KRGLLRLDYRQVWEDDFRNYLLKLNKTKPVIL 141
Query: 86 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 145
CGDLNV+H+EID+++P K + GFT ER++F +L G ID
Sbjct: 142 CGDLNVAHKEIDLANP---------------KSNRRNAGFTDEERQKFTELLDAG-FIDT 185
Query: 146 YRFLHKEKDMDCGFSWSGNPIGKYRGKRM--RIDYFIVSEELKDRIIACEMQGHGIELEG 203
+R+ + D+ +SW + I K R + + RIDYF+VSE+ +DR++ + +E E
Sbjct: 186 FRYFY--PDIPEMYSW-WSYITKARERNVGWRIDYFVVSEDFEDRLLDASIH---MEQE- 238
Query: 204 FYGSDHCPVSLEL 216
GSDHCPV L L
Sbjct: 239 --GSDHCPVVLYL 249
>gi|237753149|ref|ZP_04583629.1| exodeoxyribonuclease LexA [Helicobacter winghamensis ATCC BAA-430]
gi|229375416|gb|EEO25507.1| exodeoxyribonuclease LexA [Helicobacter winghamensis ATCC BAA-430]
Length = 250
Score = 100 bits (250), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 67/192 (34%), Positives = 100/192 (52%), Gaps = 30/192 (15%)
Query: 28 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWC 86
++ +GR+I AEF FYL+N Y PN+ K E + R +W+ + F+ S KP+I C
Sbjct: 85 HDKEGRIITAEFSDFYLVNVYTPNS--KRELERLEYRMEWEDDFRTFLKNLESKKPVIVC 142
Query: 87 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 146
GDLNV+H+EID+ +P K + GFT ER++ A+L G D Y
Sbjct: 143 GDLNVAHKEIDLKNP---------------KTNRRNAGFTDEEREKMSALLDSG-FTDTY 186
Query: 147 RFLHKEKDMDCGFSWSGNPIGKYRGKRM--RIDYFIVSEELKDRIIACEMQGHGIELEGF 204
R + EK ++W + +GK R RIDYF+ S+ L R+ + + +
Sbjct: 187 RHFYPEK--QGAYTW-WSYMGKARANNTGWRIDYFLCSKILDSRLKSASIYPEIL----- 238
Query: 205 YGSDHCPVSLEL 216
GSDHCPV +E+
Sbjct: 239 -GSDHCPVGIEI 249
>gi|223278420|ref|NP_001138591.1| DNA-(apurinic or apyrimidinic site) lyase [Canis lupus familiaris]
Length = 318
Score = 100 bits (250), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 64/192 (33%), Positives = 105/192 (54%), Gaps = 25/192 (13%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQ-CSGKPLIW 85
+++ +GRVI+AEF+TF L+ Y PN G + R++WD+ ++F+ S KPL+
Sbjct: 150 EHDQEGRVIVAEFDTFVLVTAYVPNAG--RGLVRLEYRQRWDEAFRKFLKGLASRKPLVL 207
Query: 86 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 145
CGDLNV+HEEID+ +P+ NK++ GFT ER+ FG +L+ L D+
Sbjct: 208 CGDLNVAHEEIDLRNPKG------------NKKN---AGFTPQERQGFGELLQAVPLADS 252
Query: 146 YRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 205
+R L+ F W+ + + R+DYF++S L + +++ +
Sbjct: 253 FRHLYPNTAYAYTF-WTYMMNARSKNVGWRLDYFLLSHSLLPALCDSKIRSKAL------ 305
Query: 206 GSDHCPVSLELS 217
GSDHCP++L L+
Sbjct: 306 GSDHCPITLYLA 317
>gi|407014279|gb|EKE28316.1| hypothetical protein ACD_3C00079G0002 [uncultured bacterium (gcode
4)]
Length = 255
Score = 100 bits (250), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 65/197 (32%), Positives = 98/197 (49%), Gaps = 26/197 (13%)
Query: 21 FLLSALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS- 79
+ L +++ + R+I EFE FY + Y PN+ K E N + R+ WD +++ +
Sbjct: 82 YWLWIWEHDNEWRIITLEFEKFYFITVYTPNS--KRELNRLEYRQLWDSLFLDYMRRLEV 139
Query: 80 GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKE 139
KP++ C DLNV+H+EID+ +P+ PN+ GFT ER+ F L
Sbjct: 140 NKPVVVCWDLNVAHKEIDLKNPK------------PNR---WNAGFTDEEREGFQKFLNA 184
Query: 140 GRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGI 199
G ID +R+ + EK + WS + R RIDYF+ S LKD +
Sbjct: 185 G-FIDTFRYFYPEKTEAYSW-WSNFAFARDRNIGWRIDYFLTSWGLKDNL------KDAF 236
Query: 200 ELEGFYGSDHCPVSLEL 216
++ GSDHCPV LE+
Sbjct: 237 IMDQILGSDHCPVWLEI 253
>gi|365903535|ref|ZP_09441358.1| exodeoxyribonuclease III Xth [Lactobacillus malefermentans KCTC
3548]
Length = 254
Score = 100 bits (250), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 64/196 (32%), Positives = 95/196 (48%), Gaps = 26/196 (13%)
Query: 20 HFLLSALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS 79
H+ ++ + + +GR I E+++F+L+ Y PN+G E R +WD Q ++L+ +
Sbjct: 77 HYGINVPELDHEGRTITLEYKSFFLVTCYTPNSG--HELKRLDFRMQWDPAFQSYLLKLN 134
Query: 80 G-KPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILK 138
KP+I CGDLNV+H EID+ P + GFT ER+ F +L
Sbjct: 135 KRKPVIICGDLNVAHSEIDLKSP---------------TSNHHNAGFTDEERENFTTLLD 179
Query: 139 EGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHG 198
G ID YR+ + +K + WS + RIDYF+ S+ L RI +
Sbjct: 180 SG-FIDTYRYFYPDKKEKYSW-WSYRTKAREVNSGWRIDYFLASKSLAPRISDANI---- 233
Query: 199 IELEGFYGSDHCPVSL 214
L GSDHCPV L
Sbjct: 234 --LTNVMGSDHCPVVL 247
>gi|325660677|ref|ZP_08149307.1| exodeoxyribonuclease [Lachnospiraceae bacterium 4_1_37FAA]
gi|325473038|gb|EGC76246.1| exodeoxyribonuclease [Lachnospiraceae bacterium 4_1_37FAA]
Length = 250
Score = 100 bits (250), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 65/191 (34%), Positives = 98/191 (51%), Gaps = 26/191 (13%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIW 85
+++ +GRVI EFE FY + Y PN+ + E R +W+ +++ + K P+I+
Sbjct: 84 EHDKEGRVITLEFEEFYFVTVYTPNS--QNELARLDYRMQWETEFLKYLKKLEAKKPVIF 141
Query: 86 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 145
CGDLNV+H EID+ +P K + GFT ER +F +L G ID
Sbjct: 142 CGDLNVAHREIDLKNP---------------KTNRKNAGFTDEERGKFTELLSAG-FIDT 185
Query: 146 YRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 205
+R+ + E++ + WS + + RIDYF VSE LKDR+ ++ L
Sbjct: 186 FRYFYPEQEGIYSW-WSYRFSARAKNAGWRIDYFCVSECLKDRLRDAKI------LTDVM 238
Query: 206 GSDHCPVSLEL 216
GSDHCPV L+
Sbjct: 239 GSDHCPVELDF 249
>gi|156543084|ref|XP_001605156.1| PREDICTED: recombination repair protein 1-like isoform 1 [Nasonia
vitripennis]
gi|345493726|ref|XP_003427141.1| PREDICTED: recombination repair protein 1-like isoform 2 [Nasonia
vitripennis]
Length = 391
Score = 100 bits (250), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 61/186 (32%), Positives = 101/186 (54%), Gaps = 26/186 (13%)
Query: 28 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 86
++ +GR+I AE+E FYL+N Y PN G K + +R KW++ ++ + KP+I C
Sbjct: 225 FDDEGRLITAEYEHFYLVNVYVPNAGNKLV--TLPKRLKWNEAFKKHIQDLDKKKPVIIC 282
Query: 87 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 146
GD+NV+H+EID+ +P K + GFT ER L+ G +D +
Sbjct: 283 GDMNVAHQEIDLKNP---------------KTNTKNAGFTKEERDGMTDFLQAG-FVDTF 326
Query: 147 RFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYG 206
R L+ +K D W+ + + R+DY+IVSE++K+++ C++ + + +G
Sbjct: 327 RLLYPDK-TDAYTFWAYFNNARSKNIGWRLDYYIVSEKIKNKV--CDV----VNRDQVFG 379
Query: 207 SDHCPV 212
SDHCPV
Sbjct: 380 SDHCPV 385
>gi|15227354|ref|NP_181677.1| apurinic endonuclease-redox protein [Arabidopsis thaliana]
gi|8488963|sp|P45951.2|ARP_ARATH RecName: Full=Apurinic endonuclease-redox protein; AltName:
Full=DNA-(apurinic or apyrimidinic site) lyase
gi|3241944|gb|AAC23731.1| DNA-(apurinic or apyrimidinic site) lyase (ARP) [Arabidopsis
thaliana]
gi|330254890|gb|AEC09984.1| apurinic endonuclease-redox protein [Arabidopsis thaliana]
Length = 536
Score = 100 bits (250), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 67/191 (35%), Positives = 102/191 (53%), Gaps = 27/191 (14%)
Query: 28 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWC 86
++ +GR++ AEF++FYL+NTY PN+G + S+ R +WD+ + + + KP++
Sbjct: 369 HDTEGRIVTAEFDSFYLINTYVPNSGDGLKRLSY-RIEEWDRTLSNHIKELEKSKPVVLT 427
Query: 87 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 146
GDLN +HEEID+ +P A K + GFTI ER+ FGA L + +D +
Sbjct: 428 GDLNCAHEEIDIFNP---AGNKRSA------------GFTIEERQSFGANLLDKGFVDTF 472
Query: 147 RFLHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 205
R K+ G++ W G+ K R+DYF+VS+ IA + I L
Sbjct: 473 R---KQHPGVVGYTYWGYRHGGRKTNKGWRLDYFLVSQS-----IAANVHDSYI-LPDIN 523
Query: 206 GSDHCPVSLEL 216
GSDHCP+ L L
Sbjct: 524 GSDHCPIGLIL 534
>gi|374997767|ref|YP_004973266.1| exodeoxyribonuclease III [Desulfosporosinus orientis DSM 765]
gi|357216133|gb|AET70751.1| exodeoxyribonuclease III [Desulfosporosinus orientis DSM 765]
Length = 250
Score = 100 bits (250), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 66/191 (34%), Positives = 98/191 (51%), Gaps = 26/191 (13%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIW 85
+++ +GRVI E+E F+L+ Y PN+ + R KW+ ++ KP+I+
Sbjct: 84 EHDQEGRVITLEYEPFFLVTVYTPNS--QRGLARLDYRMKWEDDFLAYLKTLEKSKPIIF 141
Query: 86 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 145
CGDLNV+H+EID+ +P+ NK++ GFT ER +F +L G ID+
Sbjct: 142 CGDLNVAHQEIDLKNPK------------TNKKN---AGFTSEERDKFSQVLNHG-FIDS 185
Query: 146 YRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 205
+RF + E+ D WS + RIDYF VS LKD++ + Y
Sbjct: 186 FRFFYPEQ-RDAYTWWSYMFNARANNAGWRIDYFCVSAGLKDQLKNVSI------YSDVY 238
Query: 206 GSDHCPVSLEL 216
GSDHCPV LE+
Sbjct: 239 GSDHCPVGLEV 249
>gi|431795205|ref|YP_007222110.1| exodeoxyribonuclease III [Desulfitobacterium dichloroeliminans LMG
P-21439]
gi|430785431|gb|AGA70714.1| exodeoxyribonuclease III [Desulfitobacterium dichloroeliminans LMG
P-21439]
Length = 250
Score = 100 bits (250), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 65/191 (34%), Positives = 97/191 (50%), Gaps = 26/191 (13%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIW 85
+++ +GRVI EFE FYL+ Y PN+ + + R W++ F+ KP+I+
Sbjct: 84 EHDQEGRVITLEFEGFYLVTVYTPNS--QRGLARLEYRMTWEEEFLSFLKNLEQAKPVIF 141
Query: 86 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 145
CGDLN++H EID+ +P K + GF+ ER +FG +LK+G ID
Sbjct: 142 CGDLNMAHTEIDLKNP---------------KTNRKNAGFSDEERAKFGELLKKG-FIDT 185
Query: 146 YRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 205
+R+ + +K + WS + RIDYF VSE LKD++ +
Sbjct: 186 FRYFYPDK-TEAYTWWSYMFNARANNAGWRIDYFCVSESLKDQL------RDAVIYSEIL 238
Query: 206 GSDHCPVSLEL 216
GSDHCPV LE+
Sbjct: 239 GSDHCPVGLEI 249
>gi|392395397|ref|YP_006431999.1| exodeoxyribonuclease III [Desulfitobacterium dehalogenans ATCC
51507]
gi|390526475|gb|AFM02206.1| exodeoxyribonuclease III [Desulfitobacterium dehalogenans ATCC
51507]
Length = 250
Score = 100 bits (250), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 66/191 (34%), Positives = 95/191 (49%), Gaps = 26/191 (13%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIW 85
+++ +GRVI EFETFYL+ YAPN+ + R W++ ++ KP+I+
Sbjct: 84 EHDQEGRVITLEFETFYLVTVYAPNS--QRGLARLDYRMTWEEEFLSYLKSLEKSKPVIF 141
Query: 86 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 145
CGDLNV+H EID+ +P K + GF+ ER +F +LK G ID
Sbjct: 142 CGDLNVAHTEIDLKNP---------------KSNRKNAGFSDEERAKFSGLLKNG-FIDT 185
Query: 146 YRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 205
+R + +K D WS + RIDYF VSE LK+ + + +
Sbjct: 186 FRHFYPDK-TDSYTWWSYMFNARTNNAGWRIDYFCVSESLKNEL------KDALIYDKIM 238
Query: 206 GSDHCPVSLEL 216
GSDHCPV LE+
Sbjct: 239 GSDHCPVGLEI 249
>gi|150388422|ref|YP_001318471.1| exodeoxyribonuclease III Xth [Alkaliphilus metalliredigens QYMF]
gi|149948284|gb|ABR46812.1| exodeoxyribonuclease III Xth [Alkaliphilus metalliredigens QYMF]
Length = 251
Score = 100 bits (250), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 67/188 (35%), Positives = 98/188 (52%), Gaps = 30/188 (15%)
Query: 32 GRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGDLN 90
GRV+ EF+ FYL+N Y PN+ K R W+ + + + KP+I CGDLN
Sbjct: 89 GRVLTLEFDQFYLVNVYTPNS--KRGLERLDGRMIWEDEFRAHLKELDAIKPVILCGDLN 146
Query: 91 VSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLH 150
V+HEEID+ +P K + GFT ER++ +L G ID++R+ +
Sbjct: 147 VAHEEIDLKNP---------------KSNKKSAGFTNEEREKMTELLTSG-FIDSFRYFY 190
Query: 151 KEKDMDCGFSWSGNPIGKYRGKRM--RIDYFIVSEELKDRIIACEMQGHGIELEGFYGSD 208
D++ +SW + +GK R + RIDYF+VSE LK+++ + GSD
Sbjct: 191 --PDLEGAYSW-WSYMGKARERNAGWRIDYFVVSERLKNQLKEAAIHPQ------IMGSD 241
Query: 209 HCPVSLEL 216
HCPV LEL
Sbjct: 242 HCPVVLEL 249
>gi|336433570|ref|ZP_08613387.1| exodeoxyribonuclease [Lachnospiraceae bacterium 2_1_58FAA]
gi|336016006|gb|EGN45803.1| exodeoxyribonuclease [Lachnospiraceae bacterium 2_1_58FAA]
Length = 250
Score = 100 bits (250), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 65/191 (34%), Positives = 99/191 (51%), Gaps = 26/191 (13%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIW 85
+++ +GRVI EFE FY + Y PN+ + E R KW+ ++ + KP+I+
Sbjct: 84 EHDQEGRVITLEFEEFYFVTVYTPNS--QNELARLDYRMKWESDFLAYLKKLEEKKPVIF 141
Query: 86 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 145
CGDLNV+H+EID+ +P K + GFT ER +F +L G ID
Sbjct: 142 CGDLNVAHKEIDLKNP---------------KTNRKNAGFTDEERGKFTEMLDAG-FIDT 185
Query: 146 YRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 205
+R+ + +++ + WS + + RIDYF VSE LKDR+ ++ L
Sbjct: 186 FRYFYPDQEGIYSW-WSYRFSARAKNAGWRIDYFCVSECLKDRLADAKI------LTDVM 238
Query: 206 GSDHCPVSLEL 216
GSDHCP+ L+L
Sbjct: 239 GSDHCPIELDL 249
>gi|154502978|ref|ZP_02040038.1| hypothetical protein RUMGNA_00800 [Ruminococcus gnavus ATCC 29149]
gi|153796517|gb|EDN78937.1| exodeoxyribonuclease III [Ruminococcus gnavus ATCC 29149]
Length = 250
Score = 100 bits (250), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 65/191 (34%), Positives = 99/191 (51%), Gaps = 26/191 (13%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIW 85
+++ +GRVI EFE FY + Y PN+ + E R KW+ ++ + KP+I+
Sbjct: 84 EHDQEGRVITLEFEEFYFVTVYTPNS--QNELARLDYRMKWESDFLAYLKKLEEEKPVIF 141
Query: 86 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 145
CGDLNV+H+EID+ +P K + GFT ER +F +L G ID
Sbjct: 142 CGDLNVAHKEIDLKNP---------------KTNRKNAGFTDEERGKFTEMLNAG-FIDT 185
Query: 146 YRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 205
+R+ + +++ + WS + + RIDYF VSE LKDR+ ++ L
Sbjct: 186 FRYFYPDQEGIYSW-WSYRFSARAKNAGWRIDYFCVSECLKDRLADAKI------LTDVM 238
Query: 206 GSDHCPVSLEL 216
GSDHCP+ L+L
Sbjct: 239 GSDHCPIELDL 249
>gi|347753480|ref|YP_004861045.1| exodeoxyribonuclease III [Bacillus coagulans 36D1]
gi|347585998|gb|AEP02265.1| exodeoxyribonuclease III [Bacillus coagulans 36D1]
Length = 251
Score = 100 bits (250), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 63/192 (32%), Positives = 100/192 (52%), Gaps = 26/192 (13%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIW 85
+ EP+GR++ E+E FYL+N Y PN+ + + R +W+ R++ ++ + KP+I
Sbjct: 84 RTEPEGRILTLEYEDFYLVNVYTPNS--QRDLARLGYRLEWEDRMRAYLTELDKKKPVIV 141
Query: 86 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 145
CGD+NV+H+EID+ + K + G GFT ER + +L G ID+
Sbjct: 142 CGDMNVAHQEIDLKNA---------------KNNVGNSGFTAEERGKMTGLLNSG-FIDS 185
Query: 146 YRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 205
+R+ + E++ + WS + R RIDYF+VS+ L R+ M
Sbjct: 186 FRYFYPEREGAYTW-WSYMNKVRERNIGWRIDYFLVSKRLAGRLKDAGMYPE------IM 238
Query: 206 GSDHCPVSLELS 217
GSDHCPV LE +
Sbjct: 239 GSDHCPVFLETN 250
>gi|472869|emb|CAA54234.1| ARP protein [Arabidopsis thaliana]
Length = 527
Score = 100 bits (249), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 67/191 (35%), Positives = 102/191 (53%), Gaps = 27/191 (14%)
Query: 28 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWC 86
++ +GR++ AEF++FYL+NTY PN+G + S+ R +WD+ + + + KP++
Sbjct: 360 HDTEGRIVTAEFDSFYLINTYVPNSGDGLKRLSY-RIEEWDRTLSNHIKELEKSKPVVLT 418
Query: 87 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 146
GDLN +HEEID+ +P A K + GFTI ER+ FGA L + +D +
Sbjct: 419 GDLNCAHEEIDIFNP---AGNKRSA------------GFTIEERQSFGANLLDKGFVDTF 463
Query: 147 RFLHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 205
R K+ G++ W G+ K R+DYF+VS+ IA + I L
Sbjct: 464 R---KQHPGVVGYTYWGYRHGGRKTNKGWRLDYFLVSQS-----IAANVHDSYI-LPDIN 514
Query: 206 GSDHCPVSLEL 216
GSDHCP+ L L
Sbjct: 515 GSDHCPIGLIL 525
>gi|340354875|ref|ZP_08677571.1| exodeoxyribonuclease III [Sporosarcina newyorkensis 2681]
gi|339622889|gb|EGQ27400.1| exodeoxyribonuclease III [Sporosarcina newyorkensis 2681]
Length = 238
Score = 100 bits (249), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 64/198 (32%), Positives = 99/198 (50%), Gaps = 26/198 (13%)
Query: 23 LSALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-K 81
L+ E +GRV+ EFE F+L+N Y PN+ + + R KW+ + + + K
Sbjct: 66 LNGQDSEAEGRVLTLEFEKFFLVNCYTPNS--QRDLARLSYRLKWEDEMLAHLTELDAQK 123
Query: 82 PLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGR 141
P+I+CGDLNV+HEEID+ + K ++G GFT ER + +L G
Sbjct: 124 PVIYCGDLNVAHEEIDICNV---------------KSNYGNSGFTKEERAKMTRLLDSG- 167
Query: 142 LIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIEL 201
ID +R+LH ++ + WS + R RIDY ++S L+ + E+ +
Sbjct: 168 FIDTFRYLHPNQEGAYTW-WSYMRDVRARNIGWRIDYLLISNRLQSTLQTSEIHAEIL-- 224
Query: 202 EGFYGSDHCPVSLELSEA 219
GSDHCP+S E + A
Sbjct: 225 ----GSDHCPISAEFAFA 238
>gi|210622632|ref|ZP_03293292.1| hypothetical protein CLOHIR_01240 [Clostridium hiranonis DSM 13275]
gi|210154133|gb|EEA85139.1| hypothetical protein CLOHIR_01240 [Clostridium hiranonis DSM 13275]
Length = 250
Score = 100 bits (249), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 63/190 (33%), Positives = 98/190 (51%), Gaps = 28/190 (14%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIW 85
+++ +GRVI EFE FY + Y PN+ + E + R +W+ + ++ S KP++
Sbjct: 84 EHDHEGRVITLEFEDFYFVTVYTPNS--QTELKRLEYRMRWEDDFRAYLKNLDSKKPVVM 141
Query: 86 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 145
CGDLNV+H+EID+ +P K + GFT ER +F L+ G ID
Sbjct: 142 CGDLNVAHKEIDLKNP---------------KTNRKNAGFTDEERNKFTEFLESG-FIDT 185
Query: 146 YRFLHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGF 204
+R+ + D + +S WS + RIDYF SE +KDR+++ ++ +
Sbjct: 186 FRYFY--PDAEGMYSWWSYRFNARKNNAGWRIDYFCTSESMKDRLVSAKIHNEVL----- 238
Query: 205 YGSDHCPVSL 214
GSDHCPV L
Sbjct: 239 -GSDHCPVEL 247
>gi|332263793|ref|XP_003280936.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase [Nomascus
leucogenys]
gi|332263795|ref|XP_003280937.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase [Nomascus
leucogenys]
gi|332263797|ref|XP_003280938.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase [Nomascus
leucogenys]
gi|332263799|ref|XP_003280939.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase [Nomascus
leucogenys]
gi|441667374|ref|XP_004091971.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase [Nomascus
leucogenys]
Length = 318
Score = 100 bits (249), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 63/192 (32%), Positives = 106/192 (55%), Gaps = 25/192 (13%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQ-CSGKPLIW 85
+++ +GRVI+AEF++F L+ Y PN G + R++WD+ +++F+ S KPL+
Sbjct: 150 EHDQEGRVIVAEFDSFVLVTAYVPNAG--RGLVRLEYRQRWDEALRKFLKGLASRKPLVL 207
Query: 86 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 145
CGDLNV+HEEID+ +P+ NK++ GFT ER+ FG +L+ L D+
Sbjct: 208 CGDLNVAHEEIDLRNPKG------------NKKN---AGFTPQERQGFGELLQAVPLADS 252
Query: 146 YRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 205
+R L+ F W+ + + R+DYF++S L + +++ +
Sbjct: 253 FRHLYPNTPYAYTF-WTYMMNARSKNVGWRLDYFLLSHSLLPALCDSKIRSKAL------ 305
Query: 206 GSDHCPVSLELS 217
GSDHCP++L L+
Sbjct: 306 GSDHCPITLYLA 317
>gi|420414387|ref|ZP_14913507.1| exodeoxyribonuclease III [Helicobacter pylori NQ4099]
gi|393026721|gb|EJB27818.1| exodeoxyribonuclease III [Helicobacter pylori NQ4099]
Length = 250
Score = 100 bits (249), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 64/191 (33%), Positives = 99/191 (51%), Gaps = 26/191 (13%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIW 85
+++ +GRVI EFE+FYL+N Y PN+ ++ + R W+ ++F+ KP+I
Sbjct: 84 EHDKEGRVITCEFESFYLVNVYTPNS--QQALSRLSYRMSWEVEFKKFLKALELKKPVIV 141
Query: 86 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 145
CGDLNV+H EID+ +P K + GF+ ER++F +L G ID
Sbjct: 142 CGDLNVAHNEIDLENP---------------KTNRKNAGFSDEEREKFSELLNAG-FIDT 185
Query: 146 YRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 205
+R+ + K+ + WS + + RIDYF+ S+ LK R+ + +
Sbjct: 186 FRYFYPNKEKAYTW-WSYMQQARDKDIGWRIDYFLCSDPLKTRL------KDALIYKDIL 238
Query: 206 GSDHCPVSLEL 216
GSDHCPV LEL
Sbjct: 239 GSDHCPVGLEL 249
>gi|385219782|ref|YP_005781257.1| exodeoxyribonuclease III [Helicobacter pylori Gambia94/24]
gi|317014940|gb|ADU82376.1| exodeoxyribonuclease III [Helicobacter pylori Gambia94/24]
Length = 250
Score = 100 bits (249), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 64/191 (33%), Positives = 98/191 (51%), Gaps = 26/191 (13%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIW 85
+++ +GRVI EFE+FYL+N Y PN+ ++ + R W+ ++F+ KP+I
Sbjct: 84 EHDKEGRVITCEFESFYLVNVYTPNS--QQALSRLSYRMNWEVEFKKFLKALELKKPVIV 141
Query: 86 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 145
CGDLNV+H EID+ +P K + GF+ ER++F +L G ID
Sbjct: 142 CGDLNVAHNEIDLENP---------------KTNRKNAGFSDEEREKFSELLNAG-FIDT 185
Query: 146 YRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 205
+R+ + K+ + WS + + RIDYF+ S LK R+ + +
Sbjct: 186 FRYFYPNKEKAYTW-WSYMQQARDKNVGWRIDYFLCSNPLKTRL------KDALIYKDIL 238
Query: 206 GSDHCPVSLEL 216
GSDHCPV LEL
Sbjct: 239 GSDHCPVGLEL 249
>gi|444522078|gb|ELV13303.1| DNA-(apurinic or apyrimidinic site) lyase [Tupaia chinensis]
Length = 318
Score = 100 bits (249), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 63/192 (32%), Positives = 106/192 (55%), Gaps = 25/192 (13%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQ-CSGKPLIW 85
+++ +GRVI+AEF+ F L+ Y PN G + R++WD+ ++F+ S KPL+
Sbjct: 150 EHDQEGRVIVAEFDKFVLVTAYVPNAG--RGLVRLEYRQRWDEAFRKFLKGLASRKPLVL 207
Query: 86 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 145
CGDLNV+HEEID+ +P+ NK++ GFT ER+ FG +L+ L D+
Sbjct: 208 CGDLNVAHEEIDLRNPKG------------NKKN---AGFTPQERQGFGELLQAVPLTDS 252
Query: 146 YRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 205
+R L+ + F W+ + + R+DYF++S+ L + +++ +
Sbjct: 253 FRHLYPDTPYAYTF-WTYMMNARSKNVGWRLDYFLLSQSLLPALCDSKIRSKAL------ 305
Query: 206 GSDHCPVSLELS 217
GSDHCP++L L+
Sbjct: 306 GSDHCPITLYLA 317
>gi|420431269|ref|ZP_14930290.1| exodeoxyribonuclease III [Helicobacter pylori Hp A-20]
gi|393044260|gb|EJB45254.1| exodeoxyribonuclease III [Helicobacter pylori Hp A-20]
Length = 250
Score = 100 bits (249), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 64/191 (33%), Positives = 98/191 (51%), Gaps = 26/191 (13%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIW 85
+++ +GRVI EFE+FYL+N Y PN+ ++ + R W+ ++F+ KP+I
Sbjct: 84 EHDKEGRVITCEFESFYLVNVYTPNS--QQALSRLSYRMSWEVEFKKFLKALELKKPVIV 141
Query: 86 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 145
CGDLNV+H EID+ +P K + GF+ ER++F +L G ID
Sbjct: 142 CGDLNVAHNEIDLENP---------------KTNRKNAGFSDEEREKFSELLNAG-FIDT 185
Query: 146 YRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 205
+R+ + K+ + WS + + RIDYF+ S LK R+ + +
Sbjct: 186 FRYFYPNKEKAYTW-WSYMQQARNKDIGWRIDYFLCSNPLKTRL------KDALIYKDIL 238
Query: 206 GSDHCPVSLEL 216
GSDHCPV LEL
Sbjct: 239 GSDHCPVGLEL 249
>gi|260663817|ref|ZP_05864702.1| exodeoxyribonuclease III [Lactobacillus fermentum 28-3-CHN]
gi|260551578|gb|EEX24765.1| exodeoxyribonuclease III [Lactobacillus fermentum 28-3-CHN]
Length = 279
Score = 100 bits (249), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 63/195 (32%), Positives = 98/195 (50%), Gaps = 29/195 (14%)
Query: 31 DGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDL 89
+GR+I EF+ FYL Y PN+G + R++WD R +E++ + KP+I GD
Sbjct: 111 EGRIITLEFKNFYLTEVYTPNSGTGLKR--LAERQEWDDRYREYLTELDRQKPVIASGDF 168
Query: 90 NVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFL 149
NV+HEEID++HP + GFT ER++F A+L G D++R L
Sbjct: 169 NVAHEEIDLAHP---------------ANNHHSAGFTDEEREKFTALLAAG-FTDSFRSL 212
Query: 150 HKEKDMDCGFSWSGN--PIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGS 207
H D +SW K RIDY++VS+ L D++++ M G
Sbjct: 213 H--PDETGAYSWWAQRAVTSKVNNSGWRIDYWLVSDRLADQVVSSTMIDSGER------R 264
Query: 208 DHCPVSLELSEASSD 222
DH P+ L+++ ++D
Sbjct: 265 DHAPIQLDINIPAAD 279
>gi|15646134|ref|NP_208316.1| exodeoxyribonuclease III [Helicobacter pylori 26695]
gi|410024766|ref|YP_006894019.1| exodeoxyribonuclease III [Helicobacter pylori Rif1]
gi|410502530|ref|YP_006937057.1| exodeoxyribonuclease III [Helicobacter pylori Rif2]
gi|410683049|ref|YP_006935451.1| exodeoxyribonuclease III [Helicobacter pylori 26695]
gi|419417169|ref|ZP_13957646.1| exodeoxyribonuclease III [Helicobacter pylori P79]
gi|2314703|gb|AAD08563.1| exodeoxyribonuclease (lexA) [Helicobacter pylori 26695]
gi|384373631|gb|EIE29102.1| exodeoxyribonuclease III [Helicobacter pylori P79]
gi|409894690|gb|AFV42748.1| exodeoxyribonuclease III [Helicobacter pylori 26695]
gi|409896423|gb|AFV44345.1| exodeoxyribonuclease III [Helicobacter pylori Rif1]
gi|409898081|gb|AFV45935.1| exodeoxyribonuclease III [Helicobacter pylori Rif2]
Length = 250
Score = 100 bits (249), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 64/191 (33%), Positives = 98/191 (51%), Gaps = 26/191 (13%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIW 85
+++ +GRVI EFE+FYL+N Y PN+ ++ + R W+ ++F+ KP+I
Sbjct: 84 EHDKEGRVITCEFESFYLVNVYTPNS--QQALSRLSYRMSWEVEFKKFLKALELKKPVIV 141
Query: 86 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 145
CGDLNV+H EID+ +P K + GF+ ER++F +L G ID
Sbjct: 142 CGDLNVAHNEIDLENP---------------KTNRKNAGFSDEEREKFSELLNAG-FIDT 185
Query: 146 YRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 205
+R+ + K+ + WS + + RIDYF+ S LK R+ + +
Sbjct: 186 FRYFYPNKEKAYTW-WSYMQQARDKNIGWRIDYFLCSNPLKTRL------KDALIYKDIL 238
Query: 206 GSDHCPVSLEL 216
GSDHCPV LEL
Sbjct: 239 GSDHCPVGLEL 249
>gi|163814023|ref|ZP_02205416.1| hypothetical protein COPEUT_00176 [Coprococcus eutactus ATCC 27759]
gi|158450717|gb|EDP27712.1| exodeoxyribonuclease III [Coprococcus eutactus ATCC 27759]
Length = 257
Score = 100 bits (249), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 60/191 (31%), Positives = 100/191 (52%), Gaps = 26/191 (13%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIW 85
+++ +GRVI E+E FY++ Y PN+ + E R KW+ + ++ + KP+I
Sbjct: 90 EHDHEGRVITLEYENFYMVTVYTPNS--QNELARLDYRMKWEDDFRAYLKKLEENKPVIV 147
Query: 86 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 145
CGD+NV+H EID+ +P K + GFT ER++ +L +G ID
Sbjct: 148 CGDMNVAHNEIDLKNP---------------KTNRKNAGFTDEEREKMTVLLDDG-FIDT 191
Query: 146 YRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 205
+R+ + +++ + WS + + RIDYF+ SE LKD++I ++
Sbjct: 192 FRYFYPDQENIYSW-WSYRFKAREKNAGWRIDYFLTSESLKDKLIDAKIH------TDIM 244
Query: 206 GSDHCPVSLEL 216
GSDHCPV L++
Sbjct: 245 GSDHCPVELDI 255
>gi|420469649|ref|ZP_14968365.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-10]
gi|393083481|gb|EJB84186.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-10]
Length = 250
Score = 100 bits (249), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 66/192 (34%), Positives = 100/192 (52%), Gaps = 28/192 (14%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEF--VLQCSGKPLI 84
+++ +GRVI EFE+FYL+N Y PN+ ++ + R W+ ++F VL+ KP+I
Sbjct: 84 EHDKEGRVITCEFESFYLVNVYTPNS--QQALSRLSYRMSWEVEFKKFLKVLELK-KPVI 140
Query: 85 WCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLID 144
CGDLNV+H EID+ +P K + GF+ ER++F +L G ID
Sbjct: 141 VCGDLNVAHNEIDLENP---------------KTNRKNAGFSDEEREKFSELLNAG-FID 184
Query: 145 AYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGF 204
+R+ + K+ + WS + + RIDYF+ S LK R+ + +
Sbjct: 185 TFRYFYPNKEKAYTW-WSYMQQARDKDIGWRIDYFLCSNPLKTRL------KDALIYKNI 237
Query: 205 YGSDHCPVSLEL 216
GSDHCPV LEL
Sbjct: 238 LGSDHCPVGLEL 249
>gi|162329924|pdb|2O3H|A Chain A, Crystal Structure Of The Human C65a Ape
Length = 285
Score = 100 bits (249), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 63/192 (32%), Positives = 105/192 (54%), Gaps = 25/192 (13%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQ-CSGKPLIW 85
+++ +GRVI+AEF++F L+ Y PN G + R++WD+ ++F+ S KPL+
Sbjct: 117 EHDQEGRVIVAEFDSFVLVTAYVPNAG--RGLVRLEYRQRWDEAFRKFLKGLASRKPLVL 174
Query: 86 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 145
CGDLNV+HEEID+ +P+ NK++ GFT ER+ FG +L+ L D+
Sbjct: 175 CGDLNVAHEEIDLRNPKG------------NKKN---AGFTPQERQGFGELLQAVPLADS 219
Query: 146 YRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 205
+R L+ F W+ + + R+DYF++S L + +++ +
Sbjct: 220 FRHLYPNTPYAYTF-WTYMMNARSKNVGWRLDYFLLSHSLLPALCDSKIRSKAL------ 272
Query: 206 GSDHCPVSLELS 217
GSDHCP++L L+
Sbjct: 273 GSDHCPITLYLA 284
>gi|420444585|ref|ZP_14943505.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-41]
gi|393058222|gb|EJB59115.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-41]
Length = 250
Score = 100 bits (249), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 64/191 (33%), Positives = 98/191 (51%), Gaps = 26/191 (13%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIW 85
+++ +GRVI EFE+FYL+N Y PN+ ++ + R W+ ++F+ KP+I
Sbjct: 84 EHDKEGRVITCEFESFYLVNVYTPNS--QQALSRLSYRMSWEVEFKKFLKALELKKPVIV 141
Query: 86 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 145
CGDLNV+H EID+ +P K + GF+ ER++F +L G ID
Sbjct: 142 CGDLNVAHNEIDLENP---------------KTNRKNAGFSDEEREKFSELLNAG-FIDT 185
Query: 146 YRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 205
+R+ + K+ + WS + + RIDYF+ S LK R+ + +
Sbjct: 186 FRYFYPNKEKAYTW-WSYMQQARDKDIGWRIDYFLCSNPLKTRL------KDALIYKNIL 238
Query: 206 GSDHCPVSLEL 216
GSDHCPV LEL
Sbjct: 239 GSDHCPVGLEL 249
>gi|281422472|ref|ZP_06253471.1| exodeoxyribonuclease III [Prevotella copri DSM 18205]
gi|281403455|gb|EFB34135.1| exodeoxyribonuclease III [Prevotella copri DSM 18205]
Length = 250
Score = 100 bits (249), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 61/193 (31%), Positives = 102/193 (52%), Gaps = 29/193 (15%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIW 85
+++ +GR+I E++ FYL+ Y PN+ + E R W+ ++F+ K P+I
Sbjct: 84 EHDHEGRIITLEYDQFYLVTCYTPNS--QTELKRLDYRMTWEDDFRKFLKSLDAKKPVII 141
Query: 86 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 145
CGDLNV+HEEID+ +P K + GFT ER++ +L +G D+
Sbjct: 142 CGDLNVAHEEIDIKNP---------------KTNRRNAGFTDEEREKMTVLLNDG-FTDS 185
Query: 146 YRFLHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGF 204
+R+LH + + +S WS + + RIDYF+VS+ +K++I ++
Sbjct: 186 FRYLHPD---EVTYSWWSYRFKAREKNAGWRIDYFLVSDRIKEQITEAKIHTE------I 236
Query: 205 YGSDHCPVSLELS 217
GSDHCPV ++L+
Sbjct: 237 MGSDHCPVEVDLT 249
>gi|146304199|ref|YP_001191515.1| exodeoxyribonuclease III Xth [Metallosphaera sedula DSM 5348]
gi|145702449|gb|ABP95591.1| exodeoxyribonuclease III Xth [Metallosphaera sedula DSM 5348]
Length = 248
Score = 100 bits (249), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 69/190 (36%), Positives = 99/190 (52%), Gaps = 27/190 (14%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGKPLIWC 86
+++ +GRVI EF+ Y++N Y PN G EE + ++++R EFV + GKP + C
Sbjct: 84 EFDSEGRVIALEFQKVYVINVYFPNAG--EELKRLDFKLRFNQRFHEFV-KNLGKPCVIC 140
Query: 87 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 146
GD NV+HEEID++ P K++ GFT ERK F L G +D +
Sbjct: 141 GDFNVAHEEIDIARP---------------KDNVNHAGFTPEERKWFHEFLASG-FVDTF 184
Query: 147 RFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYG 206
R KE +S+ + K G RIDY +VS+EL+ + E+ LE G
Sbjct: 185 RIFVKEGGHYSWWSYRFHAREKNIG--WRIDYCVVSKELEKHVKKAEI------LEKVMG 236
Query: 207 SDHCPVSLEL 216
SDH PV+LEL
Sbjct: 237 SDHAPVTLEL 246
>gi|153853826|ref|ZP_01995182.1| hypothetical protein DORLON_01173 [Dorea longicatena DSM 13814]
gi|149753576|gb|EDM63507.1| exodeoxyribonuclease III [Dorea longicatena DSM 13814]
Length = 250
Score = 100 bits (249), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 68/196 (34%), Positives = 99/196 (50%), Gaps = 28/196 (14%)
Query: 23 LSALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GK 81
L +++ +GRVI EFE FY + Y PN+ + E R +W+ ++ + K
Sbjct: 80 LGIEEHDKEGRVITLEFEDFYFITVYTPNS--QSELARLDYRMRWEDAFLAYLKKLEEKK 137
Query: 82 PLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGR 141
P+I+CGDLNV+H+EID+ +P K + GFT ER +F +L G
Sbjct: 138 PVIFCGDLNVAHKEIDLKNP---------------KTNRKNAGFTDEERGKFTNLLNAG- 181
Query: 142 LIDAYRFLHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIE 200
ID +R+ + D + +S WS + + RIDYF VSE LKDRI ++
Sbjct: 182 FIDTFRYFY--PDAEGIYSWWSYRFSARKKNAGWRIDYFCVSESLKDRIKDAKI------ 233
Query: 201 LEGFYGSDHCPVSLEL 216
L GSDHCPV L+
Sbjct: 234 LTEIMGSDHCPVELDF 249
>gi|429738347|ref|ZP_19272158.1| exodeoxyribonuclease III [Prevotella saccharolytica F0055]
gi|429160421|gb|EKY02885.1| exodeoxyribonuclease III [Prevotella saccharolytica F0055]
Length = 249
Score = 100 bits (249), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 64/191 (33%), Positives = 96/191 (50%), Gaps = 29/191 (15%)
Query: 28 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWC 86
++ +GRVI E FYL+ Y PN+ ++E R W+ + F+L KP+I C
Sbjct: 85 HDHEGRVITLEMNDFYLVTVYTPNS--QDELKRLDYRMTWEDDFKTFLLALDARKPVIVC 142
Query: 87 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 146
GD+NV+H+EID+ +P K + GFT ER++ +L G D +
Sbjct: 143 GDMNVAHQEIDIKNP---------------KTNRRNAGFTDEEREKMTVLLDSG-FTDTF 186
Query: 147 RFLHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 205
RF++ E + +S WS + R RIDYF+VS+ LK +I ++
Sbjct: 187 RFMYPE---EVTYSWWSYRFKARERNTGWRIDYFLVSDRLKPQIADAKIH------TDIL 237
Query: 206 GSDHCPVSLEL 216
GSDHCPV L+L
Sbjct: 238 GSDHCPVELDL 248
>gi|307212268|gb|EFN88076.1| Recombination repair protein 1 [Harpegnathos saltator]
Length = 327
Score = 100 bits (249), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 65/193 (33%), Positives = 102/193 (52%), Gaps = 26/193 (13%)
Query: 23 LSALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGK 81
L+ ++ +GR+I AEF F+++N Y PN G K + +R +W+K ++++ + K
Sbjct: 156 LNNSNFDSEGRIIAAEFPEFFMVNVYVPNAGQKLV--TLPKRLEWNKIFKKYIEELDQKK 213
Query: 82 PLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGR 141
P+I CGD+NV+H+EID+ +P K + GFT ER L G
Sbjct: 214 PVIICGDMNVAHQEIDLKNP---------------KTNTKNAGFTKEERDGMTDFLAAG- 257
Query: 142 LIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIEL 201
ID +R L+ +K+ F WS + + R+DYF+ SE +K++I C+ I
Sbjct: 258 FIDTFRLLYPDKEGAYTF-WSYFANARNKDIGWRLDYFLASERIKNKI--CD----NIIR 310
Query: 202 EGFYGSDHCPVSL 214
+ YGSDHCPV L
Sbjct: 311 KQVYGSDHCPVIL 323
>gi|293115606|ref|ZP_05792271.2| exodeoxyribonuclease III [Butyrivibrio crossotus DSM 2876]
gi|292809044|gb|EFF68249.1| exodeoxyribonuclease III [Butyrivibrio crossotus DSM 2876]
Length = 237
Score = 100 bits (249), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 64/191 (33%), Positives = 103/191 (53%), Gaps = 30/191 (15%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIW 85
+++ +GRVI EFE FY++ Y PN+ + E + R KW+ + F+ KP++
Sbjct: 70 EHDHEGRVITLEFENFYMVTVYTPNS--QRELTRLEYRMKWEDDFRNFLNDLRKTKPVVV 127
Query: 86 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 145
GD+NV+H+EID+ +P K + GFT ER++ +L G ID
Sbjct: 128 TGDMNVAHKEIDLKNP---------------KTNRKNAGFTDEERQKMTELLDSG-FIDT 171
Query: 146 YRFLHKEKDMDCGFSWSGNPIGKYRGKRM--RIDYFIVSEELKDRIIACEMQGHGIELEG 203
+R+ + D++ +SW + + K R K RIDYF+ S+EL+DR+I+ E+ +
Sbjct: 172 FRYFY--PDVEQKYSW-WSYMFKSREKNAGWRIDYFLASKELEDRLISAEIHDKVL---- 224
Query: 204 FYGSDHCPVSL 214
GSDHCP+ L
Sbjct: 225 --GSDHCPIEL 233
>gi|32266427|ref|NP_860459.1| exodeoxyribonuclease LexA [Helicobacter hepaticus ATCC 51449]
gi|32262477|gb|AAP77525.1| exodeoxyribonuclease LexA [Helicobacter hepaticus ATCC 51449]
Length = 252
Score = 100 bits (248), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 67/194 (34%), Positives = 97/194 (50%), Gaps = 30/194 (15%)
Query: 28 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWC 86
++ +GR+I AE+ FYL+N Y PN+ K E R KW+ + FV K +I C
Sbjct: 85 HDKEGRIITAEYPHFYLVNVYTPNS--KRELERLDYRMKWEDDFRAFVKNLENHKSVIIC 142
Query: 87 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 146
GDLNV+H+EID+ +P K + GFT ER + A+L G ID +
Sbjct: 143 GDLNVAHQEIDLKNP---------------KTNRRNAGFTDEERNKMSALLDAG-FIDTF 186
Query: 147 RFLHKEKDMDCGFSWSGNPIGKYRGKRM--RIDYFIVSEELKDRIIACEMQGHGIELEGF 204
R+ + + +SW + +GK R RIDYF+ S+ L + + H
Sbjct: 187 RYFYPT--LTGAYSW-WSYMGKARENNTGWRIDYFLCSQSLTPSLKDANIYPH------I 237
Query: 205 YGSDHCPVSLELSE 218
+GSDHCPV LEL +
Sbjct: 238 FGSDHCPVGLELKQ 251
>gi|420500328|ref|ZP_14998874.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-30]
gi|393152095|gb|EJC52396.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-30]
Length = 250
Score = 100 bits (248), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 64/191 (33%), Positives = 98/191 (51%), Gaps = 26/191 (13%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIW 85
+++ +GRVI EFE+FYL+N Y PN+ ++ + R W+ ++F+ KP+I
Sbjct: 84 EHDKEGRVITCEFESFYLVNVYTPNS--QQALSRLSYRMSWEVEFKKFLKALELKKPVIV 141
Query: 86 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 145
CGDLNV+H EID+ +P K + GF+ ER++F +L G ID
Sbjct: 142 CGDLNVAHNEIDLENP---------------KTNRKNAGFSDEEREKFNELLNAG-FIDT 185
Query: 146 YRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 205
+R+ + K+ + WS + + RIDYF+ S LK R+ + +
Sbjct: 186 FRYFYPNKEKAYTW-WSYMQQARDKNIGWRIDYFLCSNPLKTRL------KDALIYKDIL 238
Query: 206 GSDHCPVSLEL 216
GSDHCPV LEL
Sbjct: 239 GSDHCPVGLEL 249
>gi|6980804|pdb|1DE8|B Chain B, Human ApurinicAPYRIMIDINIC ENDONUCLEASE-1 (Ape1) Bound To
Abasic Dna
gi|6980805|pdb|1DE8|A Chain A, Human ApurinicAPYRIMIDINIC ENDONUCLEASE-1 (Ape1) Bound To
Abasic Dna
gi|6980812|pdb|1DE9|A Chain A, Human Ape1 Endonuclease With Bound Abasic Dna And Mn2+ Ion
gi|6980813|pdb|1DE9|B Chain B, Human Ape1 Endonuclease With Bound Abasic Dna And Mn2+ Ion
Length = 276
Score = 100 bits (248), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 63/192 (32%), Positives = 105/192 (54%), Gaps = 25/192 (13%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQ-CSGKPLIW 85
+++ +GRVI+AEF++F L+ Y PN G + R++WD+ ++F+ S KPL+
Sbjct: 108 EHDQEGRVIVAEFDSFVLVTAYVPNAG--RGLVRLEYRQRWDEAFRKFLKGLASRKPLVL 165
Query: 86 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 145
CGDLNV+HEEID+ +P+ NK++ GFT ER+ FG +L+ L D+
Sbjct: 166 CGDLNVAHEEIDLRNPKG------------NKKN---AGFTPQERQGFGELLQAVPLADS 210
Query: 146 YRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 205
+R L+ F W+ + + R+DYF++S L + +++ +
Sbjct: 211 FRHLYPNTPYAYTF-WTYMMNARSKNVGWRLDYFLLSHSLLPALCDSKIRSKAL------ 263
Query: 206 GSDHCPVSLELS 217
GSDHCP++L L+
Sbjct: 264 GSDHCPITLYLA 275
>gi|157830335|pdb|1BIX|A Chain A, The Crystal Structure Of The Human Dna Repair Endonuclease
Hap1 Suggests The Recognition Of Extra-Helical
Deoxyribose At Dna Abasic Sites
Length = 287
Score = 100 bits (248), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 63/192 (32%), Positives = 105/192 (54%), Gaps = 25/192 (13%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQ-CSGKPLIW 85
+++ +GRVI+AEF++F L+ Y PN G + R++WD+ ++F+ S KPL+
Sbjct: 119 EHDQEGRVIVAEFDSFVLVTAYVPNAG--RGLVRLEYRQRWDEAFRKFLKGLASRKPLVL 176
Query: 86 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 145
CGDLNV+HEEID+ +P+ NK++ GFT ER+ FG +L+ L D+
Sbjct: 177 CGDLNVAHEEIDLRNPKG------------NKKN---AGFTPQERQGFGELLQAVPLADS 221
Query: 146 YRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 205
+R L+ F W+ + + R+DYF++S L + +++ +
Sbjct: 222 FRHLYPNTPYAYTF-WTYMMNARSKNVGWRLDYFLLSHSLLPALCDSKIRSKAL------ 274
Query: 206 GSDHCPVSLELS 217
GSDHCP++L L+
Sbjct: 275 GSDHCPITLYLA 286
>gi|420417863|ref|ZP_14916958.1| exodeoxyribonuclease III [Helicobacter pylori NQ4044]
gi|393031044|gb|EJB32117.1| exodeoxyribonuclease III [Helicobacter pylori NQ4044]
Length = 250
Score = 100 bits (248), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 63/191 (32%), Positives = 98/191 (51%), Gaps = 26/191 (13%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIW 85
+++ +GRV+ EFE+FYL+N Y PN+ ++ + R W+ ++F+ KP+I
Sbjct: 84 EHDKEGRVVTCEFESFYLVNVYTPNS--QQALSRLSYRMSWEMEFKKFLKALELKKPVIV 141
Query: 86 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 145
CGDLNV+H EID+ +P K + GF+ ER++F +L G ID
Sbjct: 142 CGDLNVAHNEIDLENP---------------KTNRKNAGFSDEEREKFSELLNAG-FIDT 185
Query: 146 YRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 205
+R+ + K+ + WS + + RIDYF+ S LK R+ + +
Sbjct: 186 FRYFYPNKEKAYTW-WSYMQQARDKNIGWRIDYFLCSNPLKTRL------KDALIYKDIL 238
Query: 206 GSDHCPVSLEL 216
GSDHCPV LEL
Sbjct: 239 GSDHCPVGLEL 249
>gi|355574795|ref|ZP_09044431.1| exodeoxyribonuclease III [Olsenella sp. oral taxon 809 str. F0356]
gi|354818271|gb|EHF02763.1| exodeoxyribonuclease III [Olsenella sp. oral taxon 809 str. F0356]
Length = 261
Score = 100 bits (248), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 65/189 (34%), Positives = 100/189 (52%), Gaps = 26/189 (13%)
Query: 29 EPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCG 87
+ +GRV EFE ++ ++ Y PN+ K R WD+ +EF+ + KP++ CG
Sbjct: 96 DDEGRVCALEFERYWFVDVYTPNS--KNGLLRLDERMVWDRSYREFLSGLAKEKPVVTCG 153
Query: 88 DLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYR 147
D NV+HEEID+ +P+ +N GF+ ER+ FG +L+ G +D++R
Sbjct: 154 DFNVAHEEIDLKNPD---TNHMNA------------GFSDEEREGFGKLLEAG-FVDSFR 197
Query: 148 FLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGS 207
L+ +++ D WS + R RIDYF+VSE+ D I+ + L+ YGS
Sbjct: 198 RLYPDRE-DAYSWWSYRMRARERNVGWRIDYFLVSEDAADGIVEASI------LDDVYGS 250
Query: 208 DHCPVSLEL 216
DHCPV L L
Sbjct: 251 DHCPVQLTL 259
>gi|420459312|ref|ZP_14958114.1| exodeoxyribonuclease III [Helicobacter pylori Hp A-26]
gi|393072002|gb|EJB72782.1| exodeoxyribonuclease III [Helicobacter pylori Hp A-26]
Length = 250
Score = 100 bits (248), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 64/191 (33%), Positives = 97/191 (50%), Gaps = 26/191 (13%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIW 85
+++ +GRVI EFE+FYL+N Y PN+ ++ + R W+ ++F+ KP+I
Sbjct: 84 EHDKEGRVITCEFESFYLVNVYTPNS--QQALSRLSYRMSWEVEFKKFLKALELKKPVIV 141
Query: 86 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 145
CGDLNV+H EID+ +P K + GF+ ER +F +L G ID
Sbjct: 142 CGDLNVAHNEIDLENP---------------KTNRKNAGFSDEERGKFNELLNAG-FIDT 185
Query: 146 YRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 205
+R+ + K+ + WS + + RIDYF+ S LK R+ + +
Sbjct: 186 FRYFYPNKEKAYTW-WSYMQQARDKNIGWRIDYFLCSNPLKTRL------KDALIYKNIL 238
Query: 206 GSDHCPVSLEL 216
GSDHCPV LEL
Sbjct: 239 GSDHCPVGLEL 249
>gi|373465510|ref|ZP_09556970.1| exodeoxyribonuclease III [Lactobacillus kisonensis F0435]
gi|371760225|gb|EHO48917.1| exodeoxyribonuclease III [Lactobacillus kisonensis F0435]
Length = 256
Score = 100 bits (248), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 66/190 (34%), Positives = 95/190 (50%), Gaps = 28/190 (14%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIW 85
+++ +GR I E+ TFYL+ +Y PN+G K + F R WD Q+++ + KP+I
Sbjct: 88 EFDHEGRAITLEYPTFYLVTSYVPNSGAKLKRLDF--RMGWDVAFQQYLANLNKEKPVIL 145
Query: 86 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 145
CGDLNV+H+ ID+ +P+ + GFT ER F L +G +D
Sbjct: 146 CGDLNVAHKTIDLKNPQ---------------TNHHNAGFTDEERNSFSHFLDQG-FMDT 189
Query: 146 YRFLHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGF 204
+R H DM +S WS + R RIDYF+ S L D I ++ L
Sbjct: 190 FR--HFYPDMTDIYSWWSYRFHARDRNAGWRIDYFVASNRLADHISDSKI------LTDV 241
Query: 205 YGSDHCPVSL 214
+GSDHCPV L
Sbjct: 242 FGSDHCPVEL 251
>gi|323141860|ref|ZP_08076721.1| exodeoxyribonuclease III [Phascolarctobacterium succinatutens YIT
12067]
gi|322413607|gb|EFY04465.1| exodeoxyribonuclease III [Phascolarctobacterium succinatutens YIT
12067]
Length = 236
Score = 100 bits (248), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 65/196 (33%), Positives = 101/196 (51%), Gaps = 29/196 (14%)
Query: 23 LSALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK- 81
L +++ +GRVI EF +FYL+ Y PN+ K+ R W+ + ++ + K
Sbjct: 66 LGQEEHDKEGRVITLEFASFYLVTVYTPNS--KDGLARLDYRMVWEDVFRAYLQELDAKK 123
Query: 82 PLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGR 141
P++ CGDLNV+ EEID+ +P K + GFT ER +F LK
Sbjct: 124 PVVVCGDLNVAAEEIDLKNP---------------KTNRRNAGFTDEERAKFRE-LKAAG 167
Query: 142 LIDAYRFLHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIE 200
D++R+LH E + +S WS + + RIDYF+VS+ + D++ + E+
Sbjct: 168 FTDSFRYLHPE---EVKYSWWSYRFKAREKNAGWRIDYFVVSDRIADKLQSAEIHNE--- 221
Query: 201 LEGFYGSDHCPVSLEL 216
+GSDHCPVS+EL
Sbjct: 222 ---VFGSDHCPVSIEL 234
>gi|6980832|pdb|1DEW|A Chain A, Crystal Structure Of Human Ape1 Bound To Abasic Dna
gi|6980833|pdb|1DEW|B Chain B, Crystal Structure Of Human Ape1 Bound To Abasic Dna
Length = 279
Score = 100 bits (248), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 63/192 (32%), Positives = 105/192 (54%), Gaps = 25/192 (13%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQ-CSGKPLIW 85
+++ +GRVI+AEF++F L+ Y PN G + R++WD+ ++F+ S KPL+
Sbjct: 111 EHDQEGRVIVAEFDSFVLVTAYVPNAG--RGLVRLEYRQRWDEAFRKFLKGLASRKPLVL 168
Query: 86 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 145
CGDLNV+HEEID+ +P+ NK++ GFT ER+ FG +L+ L D+
Sbjct: 169 CGDLNVAHEEIDLRNPKG------------NKKN---AGFTPQERQGFGELLQAVPLADS 213
Query: 146 YRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 205
+R L+ F W+ + + R+DYF++S L + +++ +
Sbjct: 214 FRHLYPNTPYAYTF-WTYMMNARSKNVGWRLDYFLLSHSLLPALCDSKIRSKAL------ 266
Query: 206 GSDHCPVSLELS 217
GSDHCP++L L+
Sbjct: 267 GSDHCPITLYLA 278
>gi|386756397|ref|YP_006229614.1| exodeoxyribonuclease III [Helicobacter pylori PeCan18]
gi|384562655|gb|AFI03121.1| exodeoxyribonuclease III [Helicobacter pylori PeCan18]
Length = 250
Score = 100 bits (248), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 64/191 (33%), Positives = 98/191 (51%), Gaps = 26/191 (13%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIW 85
+++ +GRVI EFE+FYL+N Y PN+ ++ + R W+ ++F+ KP+I
Sbjct: 84 EHDKEGRVITCEFESFYLVNVYTPNS--QQALSRLSYRMSWEMEFKKFLKALELKKPVIV 141
Query: 86 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 145
CGDLNV+H EID+ +P K + GF+ ER++F +L G ID
Sbjct: 142 CGDLNVAHNEIDLENP---------------KTNRKNAGFSDEEREKFNELLNAG-FIDT 185
Query: 146 YRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 205
+R+ + K+ + WS + + RIDYF+ S LK R+ + +
Sbjct: 186 FRYFYPNKEKAYTW-WSYMQQARDKDIGWRIDYFLCSNPLKTRL------KDALIYKDIL 238
Query: 206 GSDHCPVSLEL 216
GSDHCPV LEL
Sbjct: 239 GSDHCPVGLEL 249
>gi|421709245|ref|ZP_16148605.1| exodeoxyribonuclease III [Helicobacter pylori R018c]
gi|421722501|ref|ZP_16161760.1| exodeoxyribonuclease III [Helicobacter pylori R056a]
gi|407211802|gb|EKE81667.1| exodeoxyribonuclease III [Helicobacter pylori R018c]
gi|407226285|gb|EKE96051.1| exodeoxyribonuclease III [Helicobacter pylori R056a]
Length = 250
Score = 100 bits (248), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 63/191 (32%), Positives = 99/191 (51%), Gaps = 26/191 (13%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIW 85
+++ +GRV+ EFE+FYL+N Y PN+ ++ + R W+ ++F+ KP+I
Sbjct: 84 EHDKEGRVVTCEFESFYLVNVYTPNS--QQALSRLSYRMSWEVEFKKFLKALELKKPVIV 141
Query: 86 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 145
CGDLNV+H EID+ +P K + GF+ ER++F +L +G ID
Sbjct: 142 CGDLNVAHNEIDLENP---------------KTNRKNAGFSDEEREKFSELLNDG-FIDT 185
Query: 146 YRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 205
+R+ + K+ + WS + + RIDYF+ S LK R+ + +
Sbjct: 186 FRYFYPNKEKAYTW-WSYMQQARDKDIGWRIDYFLCSNPLKTRL------KDALIYKDIL 238
Query: 206 GSDHCPVSLEL 216
GSDHCPV LEL
Sbjct: 239 GSDHCPVGLEL 249
>gi|317503938|ref|ZP_07961946.1| exodeoxyribonuclease III [Prevotella salivae DSM 15606]
gi|315664964|gb|EFV04623.1| exodeoxyribonuclease III [Prevotella salivae DSM 15606]
Length = 250
Score = 100 bits (248), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 64/192 (33%), Positives = 99/192 (51%), Gaps = 29/192 (15%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIW 85
+++ +GRVI E++ F+L+ Y PN +EE R W+ Q ++ Q K P+I
Sbjct: 84 EHDHEGRVITLEYDKFFLVTVYTPNA--QEELRRLDYRMTWEDAFQAYLHQLDAKKPVIV 141
Query: 86 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 145
CGD+NV+H+EID+ +P K + GFT ER + +L G D
Sbjct: 142 CGDMNVAHQEIDLKNP---------------KTNRRSAGFTDEERSKMTQLLSNG-FTDT 185
Query: 146 YRFLHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGF 204
+R LH E+ +S WS + + RIDYF++S+ L+ +++G I E
Sbjct: 186 FRTLHPEQ---ITYSYWSYRFRAREKNAGWRIDYFLISDRLRP-----QLKGASIHTE-I 236
Query: 205 YGSDHCPVSLEL 216
YGSDHCPV L++
Sbjct: 237 YGSDHCPVELDI 248
>gi|420407902|ref|ZP_14907061.1| exodeoxyribonuclease III [Helicobacter pylori NQ4216]
gi|393025387|gb|EJB26493.1| exodeoxyribonuclease III [Helicobacter pylori NQ4216]
Length = 250
Score = 100 bits (248), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 64/191 (33%), Positives = 98/191 (51%), Gaps = 26/191 (13%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIW 85
+++ +GRVI EFE+FYL+N Y PN+ ++ + R W+ ++F+ KP+I
Sbjct: 84 EHDKEGRVITCEFESFYLVNVYTPNS--QQALSRLNYRMSWEVEFKKFLKALELKKPVIV 141
Query: 86 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 145
CGDLNV+H EID+ +P K + GF+ ER++F +L G ID
Sbjct: 142 CGDLNVAHNEIDLENP---------------KTNRKNAGFSDEEREKFSELLNAG-FIDT 185
Query: 146 YRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 205
+R+ + K+ + WS + + RIDYF+ S LK R+ + +
Sbjct: 186 FRYFYPNKEKAYTW-WSYMQQARDKDIGWRIDYFLCSNPLKTRL------KDALIYKDIL 238
Query: 206 GSDHCPVSLEL 216
GSDHCPV LEL
Sbjct: 239 GSDHCPVGLEL 249
>gi|420447816|ref|ZP_14946702.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-43]
gi|420476276|ref|ZP_14974943.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-21]
gi|393061877|gb|EJB62737.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-43]
gi|393090183|gb|EJB90817.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-21]
Length = 250
Score = 100 bits (248), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 64/191 (33%), Positives = 98/191 (51%), Gaps = 26/191 (13%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIW 85
+++ +GRVI EFE+FYL+N Y PN+ ++ + R W+ ++F+ KP+I
Sbjct: 84 EHDKEGRVITCEFESFYLVNVYTPNS--QQALSRLSYRMSWEVEFKKFLKALELKKPVIV 141
Query: 86 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 145
CGDLNV+H EID+ +P K + GF+ ER++F +L G ID
Sbjct: 142 CGDLNVAHNEIDLENP---------------KTNRKNAGFSDEEREKFSELLNAG-FIDT 185
Query: 146 YRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 205
+R+ + K+ + WS + + RIDYF+ S LK R+ + +
Sbjct: 186 FRYFYPNKEKAYTW-WSYMQQARDKDIGWRIDYFLCSNPLKTRL------KDALIYKDIL 238
Query: 206 GSDHCPVSLEL 216
GSDHCPV LEL
Sbjct: 239 GSDHCPVGLEL 249
>gi|325913687|ref|ZP_08176049.1| exodeoxyribonuclease III [Lactobacillus iners UPII 60-B]
gi|325477046|gb|EGC80196.1| exodeoxyribonuclease III [Lactobacillus iners UPII 60-B]
Length = 275
Score = 100 bits (248), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 65/191 (34%), Positives = 94/191 (49%), Gaps = 29/191 (15%)
Query: 29 EPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWCG 87
+ +GR+I EF +FYL Y PN+G E R WD + QE++ + KP+I G
Sbjct: 109 DQEGRIITLEFNSFYLTQVYTPNSG--NELKRLADREIWDTKYQEYLTKLDQNKPVIASG 166
Query: 88 DLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYR 147
D NV+H+EID+ HPE + GFT ERK F +L G ID +R
Sbjct: 167 DYNVAHQEIDLKHPE---------------TNHHNAGFTDEERKGFSKLLSLG-FIDTFR 210
Query: 148 FLHKEKDMDCGFSWSGNPI--GKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 205
+++ D+ +SW I K RIDY++VS+ L D+I +M G
Sbjct: 211 YIN--GDITDVYSWWSQRIRTSKTNNSGWRIDYYLVSQRLADKIEQSKMIDTGDR----- 263
Query: 206 GSDHCPVSLEL 216
DHCP+ L++
Sbjct: 264 -KDHCPILLKI 273
>gi|421720757|ref|ZP_16160034.1| exodeoxyribonuclease III [Helicobacter pylori R055a]
gi|407225541|gb|EKE95311.1| exodeoxyribonuclease III [Helicobacter pylori R055a]
Length = 250
Score = 100 bits (248), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 64/191 (33%), Positives = 98/191 (51%), Gaps = 26/191 (13%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIW 85
+++ +GRVI EFE+FYL+N Y PN+ ++ + R W+ ++F+ KP+I
Sbjct: 84 EHDKEGRVITCEFESFYLVNVYTPNS--QQALSRLSYRMSWEVEFKKFLKALELKKPVIV 141
Query: 86 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 145
CGDLNV+H EID+ +P K + GF+ ER++F +L G ID
Sbjct: 142 CGDLNVAHNEIDLENP---------------KTNRKNAGFSDEEREKFSELLNAG-FIDT 185
Query: 146 YRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 205
+R+ + K+ + WS + + RIDYF+ S LK R+ + +
Sbjct: 186 FRYFYPNKEKAYTW-WSYMQQARDKDIGWRIDYFLCSNPLKTRL------KDALIYKDIL 238
Query: 206 GSDHCPVSLEL 216
GSDHCPV LEL
Sbjct: 239 GSDHCPVGLEL 249
>gi|420441204|ref|ZP_14940154.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-30]
gi|393054345|gb|EJB55274.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-30]
Length = 250
Score = 100 bits (248), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 64/191 (33%), Positives = 98/191 (51%), Gaps = 26/191 (13%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIW 85
+++ +GRVI EFE+FYL+N Y PN+ ++ + R W+ ++F+ KP+I
Sbjct: 84 EHDKEGRVITCEFESFYLVNVYTPNS--QQALSRLSYRMSWEVEFKKFLKALELKKPVIV 141
Query: 86 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 145
CGDLNV+H EID+ +P K + GF+ ER++F +L G ID
Sbjct: 142 CGDLNVAHNEIDLENP---------------KTNRKNAGFSDEEREKFSELLNAG-FIDT 185
Query: 146 YRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 205
+R+ + K+ + WS + + RIDYF+ S LK R+ + +
Sbjct: 186 FRYFYPNKEKAYTW-WSYMQQARDKDIGWRIDYFLCSNPLKTRL------KDALIYKDIL 238
Query: 206 GSDHCPVSLEL 216
GSDHCPV LEL
Sbjct: 239 GSDHCPVGLEL 249
>gi|372324144|ref|ZP_09518733.1| Exodeoxyribonuclease III [Oenococcus kitaharae DSM 17330]
gi|366982952|gb|EHN58351.1| Exodeoxyribonuclease III [Oenococcus kitaharae DSM 17330]
Length = 274
Score = 100 bits (248), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 65/190 (34%), Positives = 95/190 (50%), Gaps = 30/190 (15%)
Query: 31 DGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDL 89
+GR+IL E+ FYLLN Y PN+G + + R WD + +V Q + K +I+ GDL
Sbjct: 110 EGRIILLEYPDFYLLNVYTPNSG--DGLKRLEMRGLWDDNFRVYVSQLAERKAVIFSGDL 167
Query: 90 NVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFL 149
NV+HEEID+ +P + GFT ER +F +L+ G D +RF
Sbjct: 168 NVAHEEIDLKNPS---------------TNHQSAGFTDQERDKFTQLLEAG-FTDTWRFQ 211
Query: 150 HKEKDMDCGFSW--SGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGS 207
H + D +SW N + K RIDY++VS LKD+I M G +
Sbjct: 212 HPD---DVAYSWWSQRNRMAKPNNAGWRIDYYLVSSTLKDKIKKSGMIDSGTR------A 262
Query: 208 DHCPVSLELS 217
DH P+ L+++
Sbjct: 263 DHAPIYLQMA 272
>gi|383750553|ref|YP_005425656.1| exodeoxyribonuclease III [Helicobacter pylori ELS37]
gi|380875299|gb|AFF21080.1| exodeoxyribonuclease III [Helicobacter pylori ELS37]
Length = 250
Score = 100 bits (248), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 63/191 (32%), Positives = 98/191 (51%), Gaps = 26/191 (13%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIW 85
+++ +GRV+ EFE+FYL+N Y PN+ ++ + R W+ ++F+ KP+I
Sbjct: 84 EHDKEGRVVTCEFESFYLVNVYTPNS--QQALSRLSYRMSWEVEFKKFLKALELKKPVIV 141
Query: 86 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 145
CGDLNV+H EID+ +P K + GF+ ER++F +L G ID
Sbjct: 142 CGDLNVAHNEIDLENP---------------KTNRKNAGFSDEEREKFSELLNAG-FIDT 185
Query: 146 YRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 205
+R+ + K+ + WS + + RIDYF+ S LK R+ + +
Sbjct: 186 FRYFYPNKEKAYTW-WSYMQQARDKNIGWRIDYFLCSNPLKTRL------KDALIYKDIL 238
Query: 206 GSDHCPVSLEL 216
GSDHCPV LEL
Sbjct: 239 GSDHCPVGLEL 249
>gi|237750354|ref|ZP_04580834.1| exodeoxyribonuclease LexA [Helicobacter bilis ATCC 43879]
gi|229373884|gb|EEO24275.1| exodeoxyribonuclease LexA [Helicobacter bilis ATCC 43879]
Length = 255
Score = 100 bits (248), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 69/214 (32%), Positives = 113/214 (52%), Gaps = 37/214 (17%)
Query: 10 VCLCNNSSVFHFLLSALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDK 69
+ +CN+ + H ++ +GR+I+AE+ TF+L+N Y PN+ K E R++W+
Sbjct: 74 LSVCNDMGIAH-------HDKEGRIIVAEYATFFLVNVYTPNS--KRELERLTYRQEWED 124
Query: 70 RIQEFVLQCSG-KPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIA 128
+ F+ KP+I CGDLNV+H+EID+ +P K + GFT
Sbjct: 125 DFRSFLKGLEQYKPVIVCGDLNVAHKEIDLKNP---------------KTNRRNAGFTDE 169
Query: 129 ERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRM--RIDYFIVSEELK 186
ER++ +L G ID+YR+ + +K+ ++W + +GK R RIDYF++S
Sbjct: 170 EREKMSVLLDSG-FIDSYRYFYPDKEH--AYTW-WSYMGKARQNNTGWRIDYFLLS---- 221
Query: 187 DRIIACEMQGHGIELEGFYGSDHCPVSLELSEAS 220
R +A ++ I E GSDHCPV + + E +
Sbjct: 222 -RCLAKNLKEAHIYPE-IMGSDHCPVGIVIDENA 253
>gi|420429441|ref|ZP_14928474.1| exodeoxyribonuclease III [Helicobacter pylori Hp A-17]
gi|393044771|gb|EJB45763.1| exodeoxyribonuclease III [Helicobacter pylori Hp A-17]
Length = 250
Score = 100 bits (248), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 66/192 (34%), Positives = 100/192 (52%), Gaps = 28/192 (14%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEF--VLQCSGKPLI 84
+++ +GRVI EFE+FYL+N Y PN+ ++ + R W+ ++F VL+ KP+I
Sbjct: 84 EHDKEGRVITCEFESFYLVNVYTPNS--QQALSRLSYRMSWEVEFKKFLKVLELK-KPVI 140
Query: 85 WCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLID 144
CGDLNV+H EID+ +P K + GF+ ER++F +L G ID
Sbjct: 141 VCGDLNVAHNEIDLENP---------------KTNRKNAGFSDEEREKFSELLNAG-FID 184
Query: 145 AYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGF 204
+R+ + K+ + WS + + RIDYF+ S LK R+ + +
Sbjct: 185 TFRYFYPNKEKAYTW-WSYMQQARDKDIGWRIDYFLCSNPLKTRL------KDALIYKDI 237
Query: 205 YGSDHCPVSLEL 216
GSDHCPV LEL
Sbjct: 238 LGSDHCPVGLEL 249
>gi|406897912|gb|EKD41704.1| hypothetical protein ACD_73C00569G0001 [uncultured bacterium]
Length = 250
Score = 100 bits (248), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 66/191 (34%), Positives = 95/191 (49%), Gaps = 31/191 (16%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIW 85
+++ +GRVI EF +YL+N Y PN + E R KWD ++ + S KP+I+
Sbjct: 85 EHDNEGRVITLEFSDYYLVNVYTPNA--QRELTRLDYRMKWDADFLNYLKKLESHKPVIF 142
Query: 86 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 145
CGDLNV+H+EID+++P K + G GFT ER F IL+ G +D
Sbjct: 143 CGDLNVAHKEIDLANP---------------KTNQGNAGFTPQERDGFSKILESG-FVDT 186
Query: 146 YRFLHKEKDMDCGFS--WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEG 203
+R + GF WS + R RIDYF S LK+++ + + +
Sbjct: 187 FRLFNNSG----GFYTWWSYMAGARPRNIGWRIDYFCTSYNLKNKVKSSAIHAQVM---- 238
Query: 204 FYGSDHCPVSL 214
GSDHCPV L
Sbjct: 239 --GSDHCPVEL 247
>gi|312873321|ref|ZP_07733376.1| exodeoxyribonuclease III [Lactobacillus iners LEAF 2052A-d]
gi|311091201|gb|EFQ49590.1| exodeoxyribonuclease III [Lactobacillus iners LEAF 2052A-d]
Length = 275
Score = 100 bits (248), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 65/191 (34%), Positives = 94/191 (49%), Gaps = 29/191 (15%)
Query: 29 EPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWCG 87
+ +GR+I EF +FYL Y PN+G E R WD + QE++ + KP+I G
Sbjct: 109 DQEGRIITLEFNSFYLTQVYTPNSG--NELKRLADREIWDTKYQEYLTKLDQNKPVIASG 166
Query: 88 DLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYR 147
D NV+H+EID+ HPE + GFT ERK F +L G ID +R
Sbjct: 167 DYNVAHQEIDLKHPE---------------TNHHNAGFTDEERKGFSKLLSLG-FIDTFR 210
Query: 148 FLHKEKDMDCGFSWSGNPI--GKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 205
+++ D+ +SW I K RIDY++VS+ L D+I +M G
Sbjct: 211 YIN--GDITDVYSWWSQRIRTSKTNNAGWRIDYYLVSQRLADKIEQSKMIDTGDR----- 263
Query: 206 GSDHCPVSLEL 216
DHCP+ L++
Sbjct: 264 -KDHCPILLKI 273
>gi|420461013|ref|ZP_14959808.1| exodeoxyribonuclease III [Helicobacter pylori Hp A-27]
gi|393074587|gb|EJB75346.1| exodeoxyribonuclease III [Helicobacter pylori Hp A-27]
Length = 250
Score = 100 bits (248), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 64/191 (33%), Positives = 98/191 (51%), Gaps = 26/191 (13%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIW 85
+++ +GRVI EFE+FYL+N Y PN+ ++ + R W+ ++F+ KP+I
Sbjct: 84 EHDKEGRVITCEFESFYLVNVYTPNS--QQALSRLSYRMSWEVEFRKFLKALELKKPVIV 141
Query: 86 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 145
CGDLNV+H EID+ +P K + GF+ ER++F +L G ID
Sbjct: 142 CGDLNVAHNEIDLENP---------------KTNRKNAGFSDEEREKFSELLNAG-FIDT 185
Query: 146 YRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 205
+R+ + K+ + WS + + RIDYF+ S LK R+ + +
Sbjct: 186 FRYFYPNKEKAYTW-WSYMQQARDKDIGWRIDYFLCSNPLKTRL------KDALIYKDIL 238
Query: 206 GSDHCPVSLEL 216
GSDHCPV LEL
Sbjct: 239 GSDHCPVGLEL 249
>gi|421053769|ref|ZP_15516741.1| exodeoxyribonuclease III Xth [Pelosinus fermentans B4]
gi|421061178|ref|ZP_15523542.1| exodeoxyribonuclease III Xth [Pelosinus fermentans B3]
gi|421066246|ref|ZP_15527876.1| exodeoxyribonuclease III Xth [Pelosinus fermentans A12]
gi|421070869|ref|ZP_15531997.1| exodeoxyribonuclease III Xth [Pelosinus fermentans A11]
gi|392441646|gb|EIW19276.1| exodeoxyribonuclease III Xth [Pelosinus fermentans B4]
gi|392447774|gb|EIW24993.1| exodeoxyribonuclease III Xth [Pelosinus fermentans A11]
gi|392450902|gb|EIW27905.1| exodeoxyribonuclease III Xth [Pelosinus fermentans B3]
gi|392457143|gb|EIW33851.1| exodeoxyribonuclease III Xth [Pelosinus fermentans A12]
Length = 250
Score = 100 bits (248), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 63/195 (32%), Positives = 99/195 (50%), Gaps = 26/195 (13%)
Query: 23 LSALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGK 81
L+ +++ +GR+I EFE F+L+N Y PN+ K E R +W+ + ++ K
Sbjct: 80 LNIEEHDQEGRIITLEFEDFFLVNVYTPNS--KRELLRLDYRMRWEDEFRTYLTALDQSK 137
Query: 82 PLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGR 141
P+I CGD+NV+H+EID+ +P K + GFT ER + A+L+ G
Sbjct: 138 PVIICGDINVAHQEIDIKNP---------------KTNRRNAGFTDEERDKMTALLEAG- 181
Query: 142 LIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIEL 201
D +R ++ +K +D WS + R RIDYF+VS L++ I +
Sbjct: 182 FTDTFRHIYPDK-IDAYTWWSYMMNARARNIGWRIDYFLVSNALREAIKEATI------Y 234
Query: 202 EGFYGSDHCPVSLEL 216
GSDHCP+ LE+
Sbjct: 235 PDVMGSDHCPIGLEI 249
>gi|355673738|ref|ZP_09059213.1| exodeoxyribonuclease [Clostridium citroniae WAL-17108]
gi|354814451|gb|EHE99051.1| exodeoxyribonuclease [Clostridium citroniae WAL-17108]
Length = 251
Score = 100 bits (248), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 65/193 (33%), Positives = 100/193 (51%), Gaps = 28/193 (14%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIW 85
+++ +GRVI AEF +Y++ Y PN+ ++ R KW+ ++ KP+I+
Sbjct: 85 EHDTEGRVITAEFPEYYVVTCYTPNS--QDGLARLDYRMKWEDDFLSYLKGLEKNKPVIF 142
Query: 86 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 145
CGDLNV+H+EID+ +P K + GFT ER +F +L G ID
Sbjct: 143 CGDLNVAHKEIDLKNP---------------KTNRKNAGFTDEERGKFTDLLSAG-FIDT 186
Query: 146 YRFLHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGF 204
+R+ + DM+ +S WS + + RIDYF VSE LKDR+++ +
Sbjct: 187 FRYFY--PDMEGIYSWWSYRFSARAKNAGWRIDYFCVSESLKDRLVSASIH------TDI 238
Query: 205 YGSDHCPVSLELS 217
GSDHCPV L ++
Sbjct: 239 MGSDHCPVELVVN 251
>gi|385216679|ref|YP_005776636.1| exodeoxyribonuclease [Helicobacter pylori F32]
gi|317181208|dbj|BAJ58994.1| exodeoxyribonuclease [Helicobacter pylori F32]
Length = 250
Score = 100 bits (248), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 63/191 (32%), Positives = 98/191 (51%), Gaps = 26/191 (13%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIW 85
+++ +GRV+ EFE+FYL+N Y PN+ ++ + R W+ ++F+ KP+I
Sbjct: 84 EHDKEGRVVTCEFESFYLVNVYTPNS--QQALSRLSYRMSWEVEFRKFLKALELKKPVIV 141
Query: 86 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 145
CGDLNV+H EID+ +P K + GF+ ER++F +L G ID
Sbjct: 142 CGDLNVAHNEIDLENP---------------KTNRKNAGFSDEEREKFSELLNAG-FIDT 185
Query: 146 YRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 205
+R+ + K+ + WS + + RIDYF+ S LK R+ + +
Sbjct: 186 FRYFYPNKEKAYTW-WSYMQQARDKNIGWRIDYFLCSNPLKTRL------KDALIYKDIL 238
Query: 206 GSDHCPVSLEL 216
GSDHCPV LEL
Sbjct: 239 GSDHCPVGLEL 249
>gi|420520352|ref|ZP_15018787.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-5b]
gi|425433141|ref|ZP_18813679.1| exodeoxyribonuclease III [Helicobacter pylori GAM100Ai]
gi|393124748|gb|EJC25215.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-5b]
gi|410714293|gb|EKQ71771.1| exodeoxyribonuclease III [Helicobacter pylori GAM100Ai]
Length = 250
Score = 99.8 bits (247), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 64/191 (33%), Positives = 98/191 (51%), Gaps = 26/191 (13%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIW 85
+++ +GRVI EFE+FYL+N Y PN+ ++ + R W+ ++F+ KP+I
Sbjct: 84 EHDKEGRVITCEFESFYLVNVYTPNS--QQALSRLSYRMSWEVEFKKFLKALELKKPVIV 141
Query: 86 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 145
CGDLNV+H EID+ +P K + GF+ ER++F +L G ID
Sbjct: 142 CGDLNVAHNEIDLENP---------------KTNRKNAGFSDEEREKFSELLNAG-FIDT 185
Query: 146 YRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 205
+R+ + K+ + WS + + RIDYF+ S LK R+ + +
Sbjct: 186 FRYFYPNKEKAYTW-WSYMQQARDKDIGWRIDYFLCSNPLKTRL------KDALIYKDIL 238
Query: 206 GSDHCPVSLEL 216
GSDHCPV LEL
Sbjct: 239 GSDHCPVGLEL 249
>gi|420531938|ref|ZP_15030309.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-28b]
gi|393135788|gb|EJC36183.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-28b]
Length = 250
Score = 99.8 bits (247), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 64/191 (33%), Positives = 98/191 (51%), Gaps = 26/191 (13%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIW 85
+++ +GRVI EFE+FYL+N Y PN+ ++ + R W+ ++F+ KP+I
Sbjct: 84 EHDKEGRVITCEFESFYLVNVYTPNS--QQALSRLSYRMSWEVEFKKFLKALELKKPVIV 141
Query: 86 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 145
CGDLNV+H EID+ +P K + GF+ ER++F +L G ID
Sbjct: 142 CGDLNVAHNEIDLENP---------------KTNRKNAGFSDEEREKFNELLNAG-FIDT 185
Query: 146 YRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 205
+R+ + K+ + WS + + RIDYF+ S LK R+ + +
Sbjct: 186 FRYFYPNKEKAYTW-WSYMQQARDKDIGWRIDYFLCSNPLKTRL------KDALIYKDIL 238
Query: 206 GSDHCPVSLEL 216
GSDHCPV LEL
Sbjct: 239 GSDHCPVGLEL 249
>gi|420491640|ref|ZP_14990218.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-13]
gi|393104853|gb|EJC05407.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-13]
Length = 236
Score = 99.8 bits (247), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 64/191 (33%), Positives = 98/191 (51%), Gaps = 26/191 (13%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIW 85
+++ +GRVI EFE+FYL+N Y PN+ ++ + R W+ ++F+ KP+I
Sbjct: 70 EHDKEGRVITCEFESFYLVNVYTPNS--QQALSRLSYRMSWEVEFKKFLKALELKKPVIV 127
Query: 86 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 145
CGDLNV+H EID+ +P K + GF+ ER++F +L G ID
Sbjct: 128 CGDLNVAHNEIDLENP---------------KTNRKNAGFSDEEREKFNELLNAG-FIDT 171
Query: 146 YRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 205
+R+ + K+ + WS + + RIDYF+ S LK R+ + +
Sbjct: 172 FRYFYPNKEKAYTW-WSYMQQARDKDIGWRIDYFLCSNPLKTRL------KDALIYKDIL 224
Query: 206 GSDHCPVSLEL 216
GSDHCPV LEL
Sbjct: 225 GSDHCPVGLEL 235
>gi|420452902|ref|ZP_14951743.1| exodeoxyribonuclease III [Helicobacter pylori Hp A-6]
gi|393066715|gb|EJB67534.1| exodeoxyribonuclease III [Helicobacter pylori Hp A-6]
Length = 250
Score = 99.8 bits (247), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 64/191 (33%), Positives = 98/191 (51%), Gaps = 26/191 (13%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIW 85
+++ +GRVI EFE+FYL+N Y PN+ ++ + R W+ ++F+ KP+I
Sbjct: 84 EHDKEGRVITCEFESFYLVNVYTPNS--QQALSRLSYRMSWEVEFKKFLKALELKKPVIV 141
Query: 86 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 145
CGDLNV+H EID+ +P K + GF+ ER++F +L G ID
Sbjct: 142 CGDLNVAHNEIDLENP---------------KTNRKNAGFSDEEREKFNELLNAG-FIDT 185
Query: 146 YRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 205
+R+ + K+ + WS + + RIDYF+ S LK R+ + +
Sbjct: 186 FRYFYPNKEKAYTW-WSYMQQARDKDIGWRIDYFLCSNPLKTRL------KDALIYKDIL 238
Query: 206 GSDHCPVSLEL 216
GSDHCPV LEL
Sbjct: 239 GSDHCPVGLEL 249
>gi|420421296|ref|ZP_14920374.1| exodeoxyribonuclease III [Helicobacter pylori NQ4110]
gi|393037814|gb|EJB38848.1| exodeoxyribonuclease III [Helicobacter pylori NQ4110]
Length = 250
Score = 99.8 bits (247), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 64/191 (33%), Positives = 98/191 (51%), Gaps = 26/191 (13%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIW 85
+++ +GRVI EFE+FYL+N Y PN+ ++ + R W+ ++F+ KP+I
Sbjct: 84 EHDKEGRVITCEFESFYLVNVYTPNS--QQALSRLSYRMSWEVEFKKFLKALELKKPVIV 141
Query: 86 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 145
CGDLNV+H EID+ +P K + GF+ ER++F +L G ID
Sbjct: 142 CGDLNVAHNEIDLENP---------------KTNRKNAGFSDEEREKFSELLNAG-FIDT 185
Query: 146 YRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 205
+R+ + K+ + WS + + RIDYF+ S LK R+ + +
Sbjct: 186 FRYFYPNKEKAYTW-WSYMQQARDKDIGWRIDYFLCSNPLKTRL------KDALIYKDIL 238
Query: 206 GSDHCPVSLEL 216
GSDHCPV LEL
Sbjct: 239 GSDHCPVGLEL 249
>gi|242004144|ref|XP_002422991.1| Recombination repair protein, putative [Pediculus humanus corporis]
gi|212505907|gb|EEB10253.1| Recombination repair protein, putative [Pediculus humanus corporis]
Length = 332
Score = 99.8 bits (247), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 67/190 (35%), Positives = 98/190 (51%), Gaps = 30/190 (15%)
Query: 28 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWC 86
++ +GRVI AE+E FYL+ Y PN G + +R KWD + ++ + S KP+I C
Sbjct: 164 HDTEGRVITAEYEDFYLVTAYVPNAG--RGLVTLPKRLKWDVAFKGYLKKLDSEKPVILC 221
Query: 87 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 146
GDLNV+H EID+ +P + GFT ER F +L G ID +
Sbjct: 222 GDLNVAHNEIDLKNPS---------------TNTKTAGFTQEERDGFTKLLNAG-FIDTF 265
Query: 147 RFLHKEKDMDCGFSWSGNPIGKYRGKRM--RIDYFIVSEELKDRIIACEMQGHGIELEGF 204
R L+ K+ + W N IG R + R+DYF+VSE + + C+ + +
Sbjct: 266 RKLYPNKEGAYTY-W--NYIGNARSRNAGWRLDYFVVSERIMSTV--CD----SVIRKEV 316
Query: 205 YGSDHCPVSL 214
YGSDHCP++L
Sbjct: 317 YGSDHCPITL 326
>gi|421715896|ref|ZP_16155208.1| exodeoxyribonuclease III [Helicobacter pylori R037c]
gi|407221794|gb|EKE91597.1| exodeoxyribonuclease III [Helicobacter pylori R037c]
Length = 250
Score = 99.8 bits (247), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 64/191 (33%), Positives = 98/191 (51%), Gaps = 26/191 (13%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIW 85
+++ +GRVI EFE+FYL+N Y PN+ ++ + R W+ ++F+ KP+I
Sbjct: 84 EHDKEGRVITCEFESFYLVNVYTPNS--QQALSRLSYRMSWEVEFKKFLKALELKKPVIV 141
Query: 86 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 145
CGDLNV+H EID+ +P K + GF+ ER++F +L G ID
Sbjct: 142 CGDLNVAHNEIDLENP---------------KTNRKNAGFSDEEREKFSELLNAG-FIDT 185
Query: 146 YRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 205
+R+ + K+ + WS + + RIDYF+ S LK R+ + +
Sbjct: 186 FRYFYPNKEKAYTW-WSYMQQARDKDIGWRIDYFLCSNPLKTRL------KDALIYKDIL 238
Query: 206 GSDHCPVSLEL 216
GSDHCPV LEL
Sbjct: 239 GSDHCPVGLEL 249
>gi|420491838|ref|ZP_14990414.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-15]
gi|420525605|ref|ZP_15024008.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-15b]
gi|393108533|gb|EJC09067.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-15]
gi|393133626|gb|EJC34042.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-15b]
Length = 250
Score = 99.8 bits (247), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 64/191 (33%), Positives = 98/191 (51%), Gaps = 26/191 (13%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIW 85
+++ +GRVI EFE+FYL+N Y PN+ ++ + R W+ ++F+ KP+I
Sbjct: 84 EHDKEGRVITCEFESFYLVNVYTPNS--QQALSRLSYRMSWEVEFKKFLKALELKKPVIV 141
Query: 86 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 145
CGDLNV+H EID+ +P K + GF+ ER++F +L G ID
Sbjct: 142 CGDLNVAHNEIDLENP---------------KTNRKNAGFSDEEREKFSELLNAG-FIDT 185
Query: 146 YRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 205
+R+ + K+ + WS + + RIDYF+ S LK R+ + +
Sbjct: 186 FRYFYPNKEKAYTW-WSYMQQARDKDIGWRIDYFLCSNPLKTRL------KDALIYKDIL 238
Query: 206 GSDHCPVSLEL 216
GSDHCPV LEL
Sbjct: 239 GSDHCPVGLEL 249
>gi|420442874|ref|ZP_14941805.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-36]
gi|393056819|gb|EJB57729.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-36]
Length = 250
Score = 99.8 bits (247), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 63/191 (32%), Positives = 98/191 (51%), Gaps = 26/191 (13%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIW 85
+++ +GRV+ EFE+FYL+N Y PN+ ++ + R W+ ++F+ KP+I
Sbjct: 84 EHDKEGRVVTCEFESFYLVNVYTPNS--QQALSRLSYRMSWEMEFKKFLKALELKKPVIV 141
Query: 86 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 145
CGDLNV+H EID+ +P K + GF+ ER++F +L G ID
Sbjct: 142 CGDLNVAHNEIDLENP---------------KTNRKNAGFSDEEREKFSELLNAG-FIDT 185
Query: 146 YRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 205
+R+ + K+ + WS + + RIDYF+ S LK R+ + +
Sbjct: 186 FRYFYPNKEKAYTW-WSYMQQARDKDIGWRIDYFLCSNPLKTRL------KDALIYKDIL 238
Query: 206 GSDHCPVSLEL 216
GSDHCPV LEL
Sbjct: 239 GSDHCPVGLEL 249
>gi|304385589|ref|ZP_07367933.1| exodeoxyribonuclease III [Pediococcus acidilactici DSM 20284]
gi|304328093|gb|EFL95315.1| exodeoxyribonuclease III [Pediococcus acidilactici DSM 20284]
Length = 251
Score = 99.8 bits (247), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 61/196 (31%), Positives = 101/196 (51%), Gaps = 26/196 (13%)
Query: 23 LSALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GK 81
L +++ +GRVI E+E F+L+ Y PN+ + E R WD + +V Q + K
Sbjct: 80 LGIPEFDQEGRVITLEYEKFFLVTCYTPNS--QPELRRLDYRMNWDDAFRAYVKQLADTK 137
Query: 82 PLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGR 141
P+I+CGDLNV+HEEID+ + ++ + GFT ER++F +L+ G
Sbjct: 138 PVIFCGDLNVAHEEIDLKN---------------DRTNHHNAGFTDEERQKFTELLQSG- 181
Query: 142 LIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIEL 201
D YR+ + +K+ + WS + RIDYF+ S+ L ++ ++
Sbjct: 182 FTDTYRYFYPDKEGVYSW-WSYRFNARANNAGWRIDYFVTSQALDKQLADAKIHTE---- 236
Query: 202 EGFYGSDHCPVSLELS 217
+GSDHCP+ L+L+
Sbjct: 237 --IFGSDHCPIELDLN 250
>gi|420457745|ref|ZP_14956558.1| exodeoxyribonuclease III [Helicobacter pylori Hp A-16]
gi|393072264|gb|EJB73043.1| exodeoxyribonuclease III [Helicobacter pylori Hp A-16]
Length = 250
Score = 99.8 bits (247), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 64/191 (33%), Positives = 98/191 (51%), Gaps = 26/191 (13%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIW 85
+++ +GRVI EFE+FYL+N Y PN+ ++ + R W+ ++F+ KP+I
Sbjct: 84 EHDKEGRVITCEFESFYLVNVYTPNS--QQALSRLSYRMSWEVEFKKFLKALELKKPVIV 141
Query: 86 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 145
CGDLNV+H EID+ +P K + GF+ ER++F +L G ID
Sbjct: 142 CGDLNVAHNEIDLENP---------------KTNRKNAGFSDEEREKFNELLNAG-FIDT 185
Query: 146 YRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 205
+R+ + K+ + WS + + RIDYF+ S LK R+ + +
Sbjct: 186 FRYFYPNKEKAYTW-WSYMQQARDKDIGWRIDYFLCSNPLKTRL------KDALIYKDIL 238
Query: 206 GSDHCPVSLEL 216
GSDHCPV LEL
Sbjct: 239 GSDHCPVGLEL 249
>gi|420478325|ref|ZP_14976978.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-34]
gi|393097099|gb|EJB97693.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-34]
Length = 250
Score = 99.8 bits (247), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 64/191 (33%), Positives = 98/191 (51%), Gaps = 26/191 (13%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIW 85
+++ +GRVI EFE+FYL+N Y PN+ ++ + R W+ ++F+ KP+I
Sbjct: 84 EHDKEGRVITCEFESFYLVNVYTPNS--QQALSRLSYRMSWEVEFKKFLKALELKKPVIV 141
Query: 86 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 145
CGDLNV+H EID+ +P K + GF+ ER++F +L G ID
Sbjct: 142 CGDLNVAHNEIDLENP---------------KTNRKNAGFSDEEREKFSELLNAG-FIDT 185
Query: 146 YRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 205
+R+ + K+ + WS + + RIDYF+ S LK R+ + +
Sbjct: 186 FRYFYPNKEKAYTW-WSYMQQARDKDIGWRIDYFLCSNPLKTRL------KDALIYKDIL 238
Query: 206 GSDHCPVSLEL 216
GSDHCPV LEL
Sbjct: 239 GSDHCPVGLEL 249
>gi|420439551|ref|ZP_14938514.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-29]
gi|393053870|gb|EJB54812.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-29]
Length = 250
Score = 99.8 bits (247), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 64/191 (33%), Positives = 98/191 (51%), Gaps = 26/191 (13%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIW 85
+++ +GRVI EFE+FYL+N Y PN+ ++ + R W+ ++F+ KP+I
Sbjct: 84 EHDKEGRVITCEFESFYLVNVYTPNS--QQALSRLSYRMSWEVEFKKFLKALELKKPVIV 141
Query: 86 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 145
CGDLNV+H EID+ +P K + GF+ ER++F +L G ID
Sbjct: 142 CGDLNVAHNEIDLENP---------------KTNRKNAGFSDEEREKFNELLNAG-FIDT 185
Query: 146 YRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 205
+R+ + K+ + WS + + RIDYF+ S LK R+ + +
Sbjct: 186 FRYFYPNKEKAYTW-WSYMQQARDKDIGWRIDYFLCSNPLKTRL------KDALIYKDIL 238
Query: 206 GSDHCPVSLEL 216
GSDHCPV LEL
Sbjct: 239 GSDHCPVGLEL 249
>gi|420411264|ref|ZP_14910396.1| exodeoxyribonuclease III [Helicobacter pylori NQ4228]
gi|393030053|gb|EJB31132.1| exodeoxyribonuclease III [Helicobacter pylori NQ4228]
Length = 250
Score = 99.8 bits (247), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 64/191 (33%), Positives = 97/191 (50%), Gaps = 26/191 (13%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIW 85
+++ +GRVI EFE+FYL+N Y PN+ ++ + R W+ ++F+ KP+I
Sbjct: 84 EHDKEGRVITCEFESFYLVNVYTPNS--QQALSRLSYRMSWEVEFKKFLKTLELKKPVIV 141
Query: 86 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 145
CGDLNV+H EID+ +P K + GF+ ER +F +L G ID
Sbjct: 142 CGDLNVAHNEIDLENP---------------KTNRKNAGFSDEERGKFSELLNAG-FIDT 185
Query: 146 YRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 205
+R+ + K+ + WS + + RIDYF+ S LK R+ + +
Sbjct: 186 FRYFYPNKEKAYTW-WSYMQQARDKNIGWRIDYFLCSNPLKTRL------KDALIYKDIL 238
Query: 206 GSDHCPVSLEL 216
GSDHCPV LEL
Sbjct: 239 GSDHCPVGLEL 249
>gi|254780031|ref|YP_003058138.1| exodeoxyribonuclease III [Helicobacter pylori B38]
gi|254001944|emb|CAX30201.1| Putative exodeoxyribonuclease [Helicobacter pylori B38]
Length = 250
Score = 99.8 bits (247), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 64/191 (33%), Positives = 98/191 (51%), Gaps = 26/191 (13%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIW 85
+++ +GRVI EFE+FYL+N Y PN+ ++ + R W+ ++F+ KP+I
Sbjct: 84 EHDKEGRVITCEFESFYLVNVYTPNS--QQALSRLSYRMSWEVEFKKFLKALELKKPVIV 141
Query: 86 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 145
CGDLNV+H EID+ +P K + GF+ ER++F +L G ID
Sbjct: 142 CGDLNVAHNEIDLENP---------------KTNRKNAGFSDEEREKFNELLNAG-FIDT 185
Query: 146 YRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 205
+R+ + K+ + WS + + RIDYF+ S LK R+ + +
Sbjct: 186 FRYFYPNKEKAYTW-WSYMQQARDKDIGWRIDYFLCSNPLKTRL------KDALIYKDIL 238
Query: 206 GSDHCPVSLEL 216
GSDHCPV LEL
Sbjct: 239 GSDHCPVGLEL 249
>gi|385222881|ref|YP_005772014.1| exodeoxyribonuclease III [Helicobacter pylori SouthAfrica7]
gi|317011660|gb|ADU85407.1| exodeoxyribonuclease III [Helicobacter pylori SouthAfrica7]
Length = 250
Score = 99.8 bits (247), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 63/191 (32%), Positives = 98/191 (51%), Gaps = 26/191 (13%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIW 85
+++ +GRV+ EFE+FYL+N Y PN+ ++ + R W+ ++F+ KP+I
Sbjct: 84 EHDKEGRVVTCEFESFYLVNVYTPNS--QQALSRLNYRMSWEVEFKKFLKALELKKPVIV 141
Query: 86 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 145
CGDLNV+H EID+ +P K + GF+ ER++F +L G ID
Sbjct: 142 CGDLNVAHNEIDLENP---------------KTNRKNAGFSDEEREKFNELLNAG-FIDT 185
Query: 146 YRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 205
+R+ + K+ + WS + + RIDYF+ S LK R+ + +
Sbjct: 186 FRYFYPNKEKAYTW-WSYMQQARDKNIGWRIDYFLCSNPLKTRL------KDALIYKDIL 238
Query: 206 GSDHCPVSLEL 216
GSDHCPV LEL
Sbjct: 239 GSDHCPVGLEL 249
>gi|420473317|ref|ZP_14971995.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-19]
gi|420525338|ref|ZP_15023743.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-13b]
gi|393090445|gb|EJB91078.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-19]
gi|393130144|gb|EJC30574.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-13b]
Length = 250
Score = 99.8 bits (247), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 64/191 (33%), Positives = 98/191 (51%), Gaps = 26/191 (13%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIW 85
+++ +GRVI EFE+FYL+N Y PN+ ++ + R W+ ++F+ KP+I
Sbjct: 84 EHDKEGRVITCEFESFYLVNVYTPNS--QQALSRLSYRMSWEVEFKKFLKALELKKPVIV 141
Query: 86 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 145
CGDLNV+H EID+ +P K + GF+ ER++F +L G ID
Sbjct: 142 CGDLNVAHNEIDLENP---------------KTNRKNAGFSDEEREKFNELLNAG-FIDT 185
Query: 146 YRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 205
+R+ + K+ + WS + + RIDYF+ S LK R+ + +
Sbjct: 186 FRYFYPNKEKAYTW-WSYMQQARDKDIGWRIDYFLCSNPLKTRL------KDALIYKDIL 238
Query: 206 GSDHCPVSLEL 216
GSDHCPV LEL
Sbjct: 239 GSDHCPVGLEL 249
>gi|291403439|ref|XP_002718079.1| PREDICTED: APEX nuclease 1 [Oryctolagus cuniculus]
Length = 318
Score = 99.8 bits (247), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 63/192 (32%), Positives = 105/192 (54%), Gaps = 25/192 (13%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQ-CSGKPLIW 85
+++ +GRVI+AEF+ F L+ Y PN G + R++WD+ ++F+ S KPL+
Sbjct: 150 EHDQEGRVIVAEFDAFVLVTAYVPNAG--RGLVRLEYRQRWDEAFRKFLKGLASRKPLVL 207
Query: 86 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 145
CGDLNV+HEEID+ +P+ NK++ GFT ER+ FG +L+ L D+
Sbjct: 208 CGDLNVAHEEIDLRNPKG------------NKKN---AGFTPQERQGFGELLQAVPLTDS 252
Query: 146 YRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 205
+R L+ + F W+ + + R+DYF++S L + +++ +
Sbjct: 253 FRHLYPDTAYAYTF-WTYMMNARSKNVGWRLDYFLLSHSLLPALCDSKIRSKAL------ 305
Query: 206 GSDHCPVSLELS 217
GSDHCP++L L+
Sbjct: 306 GSDHCPITLYLA 317
>gi|160936797|ref|ZP_02084163.1| hypothetical protein CLOBOL_01687 [Clostridium bolteae ATCC
BAA-613]
gi|158440289|gb|EDP18035.1| hypothetical protein CLOBOL_01687 [Clostridium bolteae ATCC
BAA-613]
Length = 251
Score = 99.8 bits (247), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 62/190 (32%), Positives = 100/190 (52%), Gaps = 28/190 (14%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIW 85
+++ +GRVI AEF +Y++ Y PN+ ++ R KW+ ++ + KP+++
Sbjct: 85 EHDTEGRVITAEFPEYYVVTCYTPNS--QDGLARLDYRMKWEDDFLAYLKKLEENKPVVF 142
Query: 86 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 145
CGDLNV+H+EID+ +P K + GFT ER +F +L G +D
Sbjct: 143 CGDLNVAHKEIDLKNP---------------KTNRKNAGFTDEERGKFTDLLAAG-FVDT 186
Query: 146 YRFLHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGF 204
+R+ + D++ +S WS + + RIDYF VSE LKDR+++ + +
Sbjct: 187 FRYFY--PDLEGTYSWWSYRFSARAKNAGWRIDYFCVSESLKDRLVSASIHNTVM----- 239
Query: 205 YGSDHCPVSL 214
GSDHCPV L
Sbjct: 240 -GSDHCPVEL 248
>gi|420410840|ref|ZP_14909976.1| exodeoxyribonuclease III [Helicobacter pylori NQ4200]
gi|393026053|gb|EJB27153.1| exodeoxyribonuclease III [Helicobacter pylori NQ4200]
Length = 250
Score = 99.8 bits (247), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 63/191 (32%), Positives = 98/191 (51%), Gaps = 26/191 (13%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIW 85
+++ +GRV+ EFE+FYL+N Y PN+ ++ + R W+ ++F+ KP+I
Sbjct: 84 EHDKEGRVVTCEFESFYLVNVYTPNS--QQALSRLSYRMSWEVEFRKFLKALELKKPVIV 141
Query: 86 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 145
CGDLNV+H EID+ +P K + GF+ ER++F +L G ID
Sbjct: 142 CGDLNVAHNEIDLENP---------------KTNRKNAGFSDEEREKFSELLNAG-FIDT 185
Query: 146 YRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 205
+R+ + K+ + WS + + RIDYF+ S LK R+ + +
Sbjct: 186 FRYFYPNKEKAYTW-WSYMQQARDKNIGWRIDYFLCSNPLKTRL------KDALIYKDIL 238
Query: 206 GSDHCPVSLEL 216
GSDHCPV LEL
Sbjct: 239 GSDHCPVGLEL 249
>gi|261880757|ref|ZP_06007184.1| exodeoxyribonuclease III [Prevotella bergensis DSM 17361]
gi|270332533|gb|EFA43319.1| exodeoxyribonuclease III [Prevotella bergensis DSM 17361]
Length = 267
Score = 99.8 bits (247), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 65/197 (32%), Positives = 104/197 (52%), Gaps = 31/197 (15%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNG----WKEEENSFQRRRKWDKRIQEFVLQCS-GK 81
+++ +GRVI E+ FYL+N Y PN+ + + R KW++ + ++ + + K
Sbjct: 95 EHDNEGRVITLEYPEFYLVNVYTPNSQESLPGEVKPKRLGYRMKWEEDFRAYIKRLNETK 154
Query: 82 PLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGR 141
P+I CGDLNV+H+EID+ + K + GFT ER++ +L G
Sbjct: 155 PVIVCGDLNVAHQEIDIKNA---------------KTNRNNAGFTDEEREKMTILLDNG- 198
Query: 142 LIDAYRFLHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIE 200
ID +R ++ E+ + +S WS + R RIDYF+VSE L+++I+ +
Sbjct: 199 FIDTFRTMYPEQVI---YSWWSYRFRARERNTGWRIDYFLVSERLRNQIVDARIHTE--- 252
Query: 201 LEGFYGSDHCPVSLELS 217
YGSDHCPV LEL+
Sbjct: 253 ---IYGSDHCPVELELN 266
>gi|420420653|ref|ZP_14919737.1| exodeoxyribonuclease III [Helicobacter pylori NQ4161]
gi|393035452|gb|EJB36496.1| exodeoxyribonuclease III [Helicobacter pylori NQ4161]
Length = 250
Score = 99.8 bits (247), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 64/191 (33%), Positives = 98/191 (51%), Gaps = 26/191 (13%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIW 85
+++ +GRVI EFE+FYL+N Y PN+ ++ + R W+ ++F+ KP+I
Sbjct: 84 EHDKEGRVITCEFESFYLVNVYTPNS--QQALSRLSYRMNWEVEFKKFLKALELKKPVIV 141
Query: 86 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 145
CGDLNV+H EID+ +P K + GF+ ER++F +L G ID
Sbjct: 142 CGDLNVAHNEIDLENP---------------KTNRKNAGFSDEEREKFSELLNAG-FIDT 185
Query: 146 YRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 205
+R+ + K+ + WS + + RIDYF+ S LK R+ + +
Sbjct: 186 FRYFYPNKEKAYTW-WSYMQQARNKDIGWRIDYFLCSNPLKTRL------KDALIYKDTL 238
Query: 206 GSDHCPVSLEL 216
GSDHCPV LEL
Sbjct: 239 GSDHCPVGLEL 249
>gi|420484933|ref|ZP_14983551.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-4]
gi|420515427|ref|ZP_15013890.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-4c]
gi|420517129|ref|ZP_15015584.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-4d]
gi|393103068|gb|EJC03631.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-4]
gi|393123726|gb|EJC24194.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-4c]
gi|393124943|gb|EJC25409.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-4d]
Length = 250
Score = 99.8 bits (247), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 63/191 (32%), Positives = 98/191 (51%), Gaps = 26/191 (13%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIW 85
+++ +GRV+ EFE+FYL+N Y PN+ ++ + R W+ ++F+ KP+I
Sbjct: 84 EHDKEGRVVTCEFESFYLVNVYTPNS--QQALSRLSYRMSWEVEFKKFLKALELKKPVIV 141
Query: 86 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 145
CGDLNV+H EID+ +P K + GF+ ER++F +L G ID
Sbjct: 142 CGDLNVAHNEIDLENP---------------KTNRKNAGFSDEEREKFNELLNAG-FIDT 185
Query: 146 YRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 205
+R+ + K+ + WS + + RIDYF+ S LK R+ + +
Sbjct: 186 FRYFYPNKEKAYTW-WSYMQQARDKNIGWRIDYFLCSNPLKTRL------KDALIYKDIL 238
Query: 206 GSDHCPVSLEL 216
GSDHCPV LEL
Sbjct: 239 GSDHCPVGLEL 249
>gi|420451071|ref|ZP_14949925.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-45]
gi|393065003|gb|EJB65833.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-45]
Length = 250
Score = 99.8 bits (247), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 63/191 (32%), Positives = 98/191 (51%), Gaps = 26/191 (13%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIW 85
+++ +GRV+ EFE+FYL+N Y PN+ ++ + R W+ ++F+ KP+I
Sbjct: 84 EHDKEGRVVTCEFESFYLVNVYTPNS--QQALSRLSYRMSWEVEFKKFLKTLELKKPVIV 141
Query: 86 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 145
CGDLNV+H EID+ +P K + GF+ ER++F +L G ID
Sbjct: 142 CGDLNVAHNEIDLENP---------------KTNRKNAGFSDEEREKFSELLNAG-FIDT 185
Query: 146 YRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 205
+R+ + K+ + WS + + RIDYF+ S LK R+ + +
Sbjct: 186 FRYFYPNKEKAYTW-WSYMQQARDKDIGWRIDYFLCSNPLKTRL------KDALIYKDIL 238
Query: 206 GSDHCPVSLEL 216
GSDHCPV LEL
Sbjct: 239 GSDHCPVGLEL 249
>gi|420476560|ref|ZP_14975223.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-23]
gi|393094985|gb|EJB95590.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-23]
Length = 250
Score = 99.8 bits (247), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 64/191 (33%), Positives = 98/191 (51%), Gaps = 26/191 (13%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIW 85
+++ +GRVI EFE+FYL+N Y PN+ ++ + R W+ ++F+ KP+I
Sbjct: 84 EHDKEGRVITCEFESFYLVNVYTPNS--QQALSRLSYRMSWEVEFRKFLKALELKKPVIV 141
Query: 86 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 145
CGDLNV+H EID+ +P K + GF+ ER++F +L G ID
Sbjct: 142 CGDLNVAHNEIDLENP---------------KTNRKNAGFSDEEREKFNELLNAG-FIDT 185
Query: 146 YRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 205
+R+ + K+ + WS + + RIDYF+ S LK R+ + +
Sbjct: 186 FRYFYPNKEKAYTW-WSYMQQARDKDIGWRIDYFLCSNPLKTRL------KDALIYKDIL 238
Query: 206 GSDHCPVSLEL 216
GSDHCPV LEL
Sbjct: 239 GSDHCPVGLEL 249
>gi|270290148|ref|ZP_06196374.1| exodeoxyribonuclease III [Pediococcus acidilactici 7_4]
gi|418069863|ref|ZP_12707140.1| exonuclease III [Pediococcus acidilactici MA18/5M]
gi|270281685|gb|EFA27517.1| exodeoxyribonuclease III [Pediococcus acidilactici 7_4]
gi|357536394|gb|EHJ20425.1| exonuclease III [Pediococcus acidilactici MA18/5M]
Length = 251
Score = 99.8 bits (247), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 61/196 (31%), Positives = 101/196 (51%), Gaps = 26/196 (13%)
Query: 23 LSALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GK 81
L +++ +GRVI E+E F+L+ Y PN+ + E R WD + +V Q + K
Sbjct: 80 LGIPEFDQEGRVITLEYEEFFLVTCYTPNS--QPELRRLDYRMNWDDAFRAYVKQLADTK 137
Query: 82 PLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGR 141
P+I+CGDLNV+HEEID+ + ++ + GFT ER++F +L+ G
Sbjct: 138 PVIFCGDLNVAHEEIDLKN---------------DRTNHHNAGFTDEERQKFTELLQSG- 181
Query: 142 LIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIEL 201
D YR+ + +K+ + WS + RIDYF+ S+ L ++ ++
Sbjct: 182 FTDTYRYFYPDKEGVYSW-WSYRFNARANNAGWRIDYFVTSQALDKQLADAKIHTE---- 236
Query: 202 EGFYGSDHCPVSLELS 217
+GSDHCP+ L+L+
Sbjct: 237 --IFGSDHCPIELDLN 250
>gi|217034282|ref|ZP_03439699.1| hypothetical protein HP9810_885g13 [Helicobacter pylori 98-10]
gi|216943254|gb|EEC22719.1| hypothetical protein HP9810_885g13 [Helicobacter pylori 98-10]
Length = 250
Score = 99.8 bits (247), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 63/191 (32%), Positives = 98/191 (51%), Gaps = 26/191 (13%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIW 85
+++ +GRV+ EFE+FYL+N Y PN+ ++ + R W+ ++F+ KP+I
Sbjct: 84 EHDKEGRVVTCEFESFYLVNVYTPNS--QQALSRLSYRMSWEVEFRKFLKALELKKPVIV 141
Query: 86 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 145
CGDLNV+H EID+ +P K + GF+ ER++F +L G ID
Sbjct: 142 CGDLNVAHNEIDLENP---------------KTNRKNAGFSDEEREKFNELLNAG-FIDT 185
Query: 146 YRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 205
+R+ + K+ + WS + + RIDYF+ S LK R+ + +
Sbjct: 186 FRYFYPNKEKAYTW-WSYMQQARDKNIGWRIDYFLCSNPLKTRL------KDALIYKDIL 238
Query: 206 GSDHCPVSLEL 216
GSDHCPV LEL
Sbjct: 239 GSDHCPVGLEL 249
>gi|420513485|ref|ZP_15011963.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-2b]
gi|393155902|gb|EJC56173.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-2b]
Length = 250
Score = 99.8 bits (247), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 63/191 (32%), Positives = 98/191 (51%), Gaps = 26/191 (13%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIW 85
+++ +GRV+ EFE+FYL+N Y PN+ ++ + R W+ ++F+ KP+I
Sbjct: 84 EHDKEGRVVTCEFESFYLVNVYTPNS--QQALSRLSYRMSWEVEFKKFLKALELKKPVIV 141
Query: 86 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 145
CGDLNV+H EID+ +P K + GF+ ER++F +L G ID
Sbjct: 142 CGDLNVAHNEIDLENP---------------KTNRKNAGFSDKEREKFSELLNAG-FIDT 185
Query: 146 YRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 205
+R+ + K+ + WS + + RIDYF+ S LK R+ + +
Sbjct: 186 FRYFYPNKEKAYTW-WSYMQQARDKDIGWRIDYFLCSNPLKTRL------KDALIYKDIL 238
Query: 206 GSDHCPVSLEL 216
GSDHCPV LEL
Sbjct: 239 GSDHCPVGLEL 249
>gi|421712646|ref|ZP_16151978.1| exodeoxyribonuclease III [Helicobacter pylori R32b]
gi|407217447|gb|EKE87280.1| exodeoxyribonuclease III [Helicobacter pylori R32b]
Length = 250
Score = 99.8 bits (247), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 64/191 (33%), Positives = 97/191 (50%), Gaps = 26/191 (13%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIW 85
+++ +GRVI EFE+FYL+N Y PN+ ++ + R W+ ++F+ KP+I
Sbjct: 84 EHDKEGRVITCEFESFYLVNVYTPNS--QQALSRLSYRMSWEVEFKKFLKALELKKPVIV 141
Query: 86 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 145
CGDLNV+H EID+ +P K + GF+ ER +F +L G ID
Sbjct: 142 CGDLNVAHNEIDLENP---------------KTNRKNAGFSDEERGKFSELLNTG-FIDT 185
Query: 146 YRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 205
+R+ + K+ + WS + + RIDYF+ S LK R+ + +
Sbjct: 186 FRYFYPNKEKAYTW-WSYMQQARDKNIGWRIDYFLCSNPLKTRL------KDALIYKDIL 238
Query: 206 GSDHCPVSLEL 216
GSDHCPV LEL
Sbjct: 239 GSDHCPVGLEL 249
>gi|432112926|gb|ELK35512.1| DNA-(apurinic or apyrimidinic site) lyase [Myotis davidii]
Length = 320
Score = 99.8 bits (247), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 63/192 (32%), Positives = 104/192 (54%), Gaps = 25/192 (13%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQ-CSGKPLIW 85
+++ +GRVI+AE++ F L+ Y PN G + R++WD+ ++F+ S KPL+
Sbjct: 152 EHDQEGRVIVAEYDAFVLVTAYVPNAG--RGLVRLEYRQRWDEAFRKFLKDLASRKPLVL 209
Query: 86 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 145
CGDLNV+HEEID+ +P+ NK++ GFT ER+ FG +L+ L D+
Sbjct: 210 CGDLNVAHEEIDLRNPKG------------NKKN---AGFTPQERQGFGELLQAVPLADS 254
Query: 146 YRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 205
+R L+ F W+ + + R+DYF+VS L + +++ +
Sbjct: 255 FRHLYPNTAYAYTF-WTYMMNARSKNVGWRLDYFLVSHSLLPALCDSKIRSKAL------ 307
Query: 206 GSDHCPVSLELS 217
GSDHCP++L L+
Sbjct: 308 GSDHCPITLYLA 319
>gi|419419212|ref|ZP_13959471.1| exodeoxyribonuclease III [Helicobacter pylori NCTC 11637 = CCUG
17874]
gi|384372800|gb|EIE28363.1| exodeoxyribonuclease III [Helicobacter pylori NCTC 11637 = CCUG
17874]
Length = 250
Score = 99.8 bits (247), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 63/191 (32%), Positives = 98/191 (51%), Gaps = 26/191 (13%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIW 85
+++ +GRV+ EFE+FYL+N Y PN+ ++ + R W+ ++F+ KP+I
Sbjct: 84 EHDKEGRVVTCEFESFYLVNVYTPNS--QQALSRLSYRMSWEVEFKKFLKALELKKPVIV 141
Query: 86 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 145
CGDLNV+H EID+ +P K + GF+ ER +F +L +G ID
Sbjct: 142 CGDLNVAHNEIDLENP---------------KTNRKNAGFSDEERGKFSELLNDG-FIDT 185
Query: 146 YRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 205
+R+ + K+ + WS + + RIDYF+ S LK R+ + +
Sbjct: 186 FRYFYPNKEKAYTW-WSYMQQARDKNIGWRIDYFLCSNPLKTRL------KDALIYKDIL 238
Query: 206 GSDHCPVSLEL 216
GSDHCPV LEL
Sbjct: 239 GSDHCPVGLEL 249
>gi|426376144|ref|XP_004054867.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase [Gorilla
gorilla gorilla]
gi|426376146|ref|XP_004054868.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase [Gorilla
gorilla gorilla]
gi|426376148|ref|XP_004054869.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase [Gorilla
gorilla gorilla]
gi|426376150|ref|XP_004054870.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase [Gorilla
gorilla gorilla]
Length = 318
Score = 99.8 bits (247), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 63/192 (32%), Positives = 105/192 (54%), Gaps = 25/192 (13%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQ-CSGKPLIW 85
+++ +GRVI+AEF++F L+ Y PN G + R++WD+ ++F+ S KPL+
Sbjct: 150 EHDQEGRVIVAEFDSFVLVTAYVPNAG--RGLVRLEYRQRWDEAFRKFLKGLASRKPLVL 207
Query: 86 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 145
CGDLNV+HEEID+ +P+ NK++ GFT ER+ FG +L+ L D+
Sbjct: 208 CGDLNVAHEEIDLRNPKG------------NKKN---AGFTPQERQGFGELLQAVPLADS 252
Query: 146 YRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 205
+R L+ F W+ + + R+DYF++S L + +++ +
Sbjct: 253 FRHLYPNTPYAYTF-WTYMMNARSKNVGWRLDYFLLSHSLLPALCDSKIRSKAL------ 305
Query: 206 GSDHCPVSLELS 217
GSDHCP++L L+
Sbjct: 306 GSDHCPITLYLA 317
>gi|351701700|gb|EHB04619.1| DNA-(apurinic or apyrimidinic site) lyase [Heterocephalus glaber]
Length = 318
Score = 99.8 bits (247), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 63/191 (32%), Positives = 104/191 (54%), Gaps = 25/191 (13%)
Query: 28 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQ-CSGKPLIWC 86
++ +GRVI+AEF++F L+ Y PN G + R++WD+ ++F+ S KPL+ C
Sbjct: 151 HDQEGRVIVAEFDSFVLVTAYVPNAG--RGLVRLEYRQRWDEAFRKFLKGLASRKPLVLC 208
Query: 87 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 146
GDLNV+HEEID+ +P+ NK++ GFT ER+ FG +L+ L D++
Sbjct: 209 GDLNVAHEEIDLRNPKG------------NKKN---AGFTPQERQGFGELLQAVPLTDSF 253
Query: 147 RFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYG 206
R L+ F W+ + + R+DYF++S L + +++ + G
Sbjct: 254 RHLYPNAAYAYTF-WTYMMNARSKNVGWRLDYFLLSHSLLPALCDSKIRSKAL------G 306
Query: 207 SDHCPVSLELS 217
SDHCP++L L+
Sbjct: 307 SDHCPITLYLA 317
>gi|221194898|ref|ZP_03567954.1| exodeoxyribonuclease III [Atopobium rimae ATCC 49626]
gi|221184801|gb|EEE17192.1| exodeoxyribonuclease III [Atopobium rimae ATCC 49626]
Length = 281
Score = 99.8 bits (247), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 66/188 (35%), Positives = 94/188 (50%), Gaps = 28/188 (14%)
Query: 31 DGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGDL 89
+GRV EF+ F+ ++ Y PN+ KE+ R WD+R ++F+ + S KPLI CGD
Sbjct: 118 EGRVCALEFDRFWFVDVYTPNS--KEQLARLDERLVWDERYRDFIAELSAQKPLITCGDF 175
Query: 90 NVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFL 149
NV+H EID+ +P + GF+ ER+ F +L G D +R+
Sbjct: 176 NVAHTEIDLKNP---------------SSNHKNAGFSDEERESFTKLLDAG-FTDTFRYR 219
Query: 150 HKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSD 208
H D+ +S WS + RIDYF+VS IA ++ G I L YGSD
Sbjct: 220 H--PDVTGAYSWWSYRFNARKNNAGWRIDYFLVSNR-----IAQQITGAAI-LNEVYGSD 271
Query: 209 HCPVSLEL 216
HCPV L +
Sbjct: 272 HCPVELTI 279
>gi|401680683|ref|ZP_10812594.1| exodeoxyribonuclease III [Veillonella sp. ACP1]
gi|400218294|gb|EJO49178.1| exodeoxyribonuclease III [Veillonella sp. ACP1]
Length = 251
Score = 99.8 bits (247), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 65/193 (33%), Positives = 103/193 (53%), Gaps = 30/193 (15%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIW 85
+++ +GRVI AEF+ FYL+ Y PN+ + E R W+ + ++L+ K P+I
Sbjct: 84 EHDQEGRVITAEFDNFYLVCCYTPNS--QRELARLDYRMAWEDAFRAYLLELDKKKPVIL 141
Query: 86 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 145
CGDLNV+H EID+ +P K + GF+ ER + +L+ G D
Sbjct: 142 CGDLNVAHNEIDLKNP---------------KTNRKNAGFSDEERAKMTTLLESG-FTDT 185
Query: 146 YRFLHKEKDMDCGFSWSGNPIGKYRGKRM--RIDYFIVSEELKDRIIACEMQGHGIELEG 203
+R+L+ D +SW + +GK R + + RIDYFI S+ L D+I ++ +
Sbjct: 186 FRYLY--PDAVDEYSW-WSYMGKARDRNVGWRIDYFITSKRLDDKINEAKIH------QQ 236
Query: 204 FYGSDHCPVSLEL 216
+GSDHCPV L++
Sbjct: 237 IFGSDHCPVELDI 249
>gi|420494787|ref|ZP_14993354.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-16]
gi|393109942|gb|EJC10470.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-16]
Length = 250
Score = 99.8 bits (247), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 63/191 (32%), Positives = 98/191 (51%), Gaps = 26/191 (13%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIW 85
+++ +GRV+ EFE+FYL+N Y PN+ ++ + R W+ ++F+ KP+I
Sbjct: 84 EHDKEGRVVTCEFESFYLVNVYTPNS--QQALSRLSYRMSWEVEFKKFLKALELKKPVIV 141
Query: 86 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 145
CGDLNV+H EID+ +P K + GF+ ER++F +L G ID
Sbjct: 142 CGDLNVAHNEIDLENP---------------KTNRKNAGFSDEEREKFNELLNAG-FIDT 185
Query: 146 YRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 205
+R+ + K+ + WS + + RIDYF+ S LK R+ + +
Sbjct: 186 FRYFYPNKEKAYTW-WSYMQQARDKNIGWRIDYFLCSNPLKTRL------KDALIYKDIL 238
Query: 206 GSDHCPVSLEL 216
GSDHCPV LEL
Sbjct: 239 GSDHCPVGLEL 249
>gi|420462757|ref|ZP_14961538.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-3]
gi|393078158|gb|EJB78902.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-3]
Length = 250
Score = 99.8 bits (247), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 63/191 (32%), Positives = 98/191 (51%), Gaps = 26/191 (13%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIW 85
+++ +GRV+ EFE+FYL+N Y PN+ ++ + R W+ ++F+ KP+I
Sbjct: 84 EHDKEGRVVTCEFESFYLVNVYTPNS--QQALSRLSYRMSWEVEFKKFLKALELKKPVIV 141
Query: 86 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 145
CGDLNV+H EID+ +P K + GF+ ER++F +L G ID
Sbjct: 142 CGDLNVAHNEIDLENP---------------KTNRKNAGFSDEEREKFSELLNAG-FIDT 185
Query: 146 YRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 205
+R+ + K+ + WS + + RIDYF+ S LK R+ + +
Sbjct: 186 FRYFYPNKEKAYTW-WSYMQQARDKDIGWRIDYFLCSNPLKTRL------KDALIYKDIL 238
Query: 206 GSDHCPVSLEL 216
GSDHCPV LEL
Sbjct: 239 GSDHCPVGLEL 249
>gi|223935760|ref|ZP_03627676.1| exodeoxyribonuclease III Xth [bacterium Ellin514]
gi|223895768|gb|EEF62213.1| exodeoxyribonuclease III Xth [bacterium Ellin514]
Length = 250
Score = 99.8 bits (247), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 66/194 (34%), Positives = 103/194 (53%), Gaps = 31/194 (15%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIW 85
+++ +GRV+ +E+ F+L+N Y PN+ K E R++WD ++ + KP+I+
Sbjct: 85 EHDMEGRVLTSEYPEFFLVNVYVPNS--KRELTRLAYRQQWDCDFLSYLKKLEKKKPVIF 142
Query: 86 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 145
CGDLNV+H EID+++P K + GFT ER F ++K G ID
Sbjct: 143 CGDLNVAHTEIDLANP---------------KANVKNHGFTPEERAGFSTVIKAG-FIDT 186
Query: 146 YRFLHKEKDMDCGFSWSGNPIGKYRGKRM--RIDYFIVSEELKDRIIACEMQGHGIELEG 203
+R K +SW +P+G R + + RIDYF++S L+ R+ +Q +
Sbjct: 187 FREFEKGGGH---YSW-WSPMGGARSRNVGWRIDYFLISSALRPRLKRAFIQPN------ 236
Query: 204 FYGSDHCPVSLELS 217
GSDHCPV +ELS
Sbjct: 237 IPGSDHCPVGIELS 250
>gi|427440664|ref|ZP_18924936.1| exodeoxyribonuclease III [Pediococcus lolii NGRI 0510Q]
gi|425787371|dbj|GAC45724.1| exodeoxyribonuclease III [Pediococcus lolii NGRI 0510Q]
Length = 256
Score = 99.8 bits (247), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 61/196 (31%), Positives = 101/196 (51%), Gaps = 26/196 (13%)
Query: 23 LSALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GK 81
L +++ +GRVI E+E F+L+ Y PN+ + E R WD + +V Q + K
Sbjct: 85 LGIPEFDQEGRVITLEYEEFFLVTCYTPNS--QPELRRLDYRMNWDDAFRAYVKQLADTK 142
Query: 82 PLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGR 141
P+I+CGDLNV+HEEID+ + ++ + GFT ER++F +L+ G
Sbjct: 143 PVIFCGDLNVAHEEIDLKN---------------DRTNHHNAGFTDEERQKFTELLQSG- 186
Query: 142 LIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIEL 201
D YR+ + +K+ + WS + RIDYF+ S+ L ++ ++
Sbjct: 187 FTDTYRYFYPDKEGVYSW-WSYRFNARANNAGWRIDYFVTSQALDKQLADAKIHTE---- 241
Query: 202 EGFYGSDHCPVSLELS 217
+GSDHCP+ L+L+
Sbjct: 242 --IFGSDHCPIELDLN 255
>gi|291561139|emb|CBL39938.1| exodeoxyribonuclease III [butyrate-producing bacterium SS3/4]
Length = 284
Score = 99.8 bits (247), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 60/195 (30%), Positives = 105/195 (53%), Gaps = 26/195 (13%)
Query: 23 LSALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGK 81
L +++ +GRVI AEF +Y++ Y PN+ ++ R +W+ + ++ + + K
Sbjct: 114 LGIEEHDHEGRVITAEFPEYYVVTCYTPNS--QDGLKRLDYRMQWEDAFRAYLKELETKK 171
Query: 82 PLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGR 141
P+I+CGDLNV+H+EID+ +P K + GF+ ER +F +L+ G
Sbjct: 172 PVIFCGDLNVAHQEIDLKNP---------------KTNRKNAGFSDEERAKFTELLEAG- 215
Query: 142 LIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIEL 201
+D +R+ + +++ + WS + + RIDYF VSE LKDR++ ++ +
Sbjct: 216 FVDTFRYFYPDQEGIYSW-WSYRFSARAKNAGWRIDYFCVSESLKDRLVDAKIHTEVM-- 272
Query: 202 EGFYGSDHCPVSLEL 216
GSDHCPV L++
Sbjct: 273 ----GSDHCPVELDI 283
>gi|420467774|ref|ZP_14966523.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-9]
gi|393083034|gb|EJB83748.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-9]
Length = 250
Score = 99.8 bits (247), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 64/191 (33%), Positives = 97/191 (50%), Gaps = 26/191 (13%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIW 85
+++ +GRVI EFE+FYL+N Y PN+ ++ + R W+ ++F+ KP+I
Sbjct: 84 EHDKEGRVITCEFESFYLVNVYTPNS--QQALSRLSYRMSWEVEFKKFLKALELKKPVIV 141
Query: 86 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 145
CGDLNV+H EID+ +P K + GF+ ER +F +L G ID
Sbjct: 142 CGDLNVAHNEIDLENP---------------KTNRKNAGFSDEERGKFSELLNAG-FIDT 185
Query: 146 YRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 205
+R+ + K+ + WS + + RIDYF+ S LK R+ + +
Sbjct: 186 FRYFYPNKEKAYTW-WSYMQQARDKNIGWRIDYFLCSNPLKTRL------KDALIYKDIL 238
Query: 206 GSDHCPVSLEL 216
GSDHCPV LEL
Sbjct: 239 GSDHCPVGLEL 249
>gi|357405967|ref|YP_004917891.1| exodeoxyribonuclease [Methylomicrobium alcaliphilum 20Z]
gi|351718632|emb|CCE24306.1| Exodeoxyribonuclease [Methylomicrobium alcaliphilum 20Z]
Length = 254
Score = 99.8 bits (247), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 71/197 (36%), Positives = 100/197 (50%), Gaps = 38/197 (19%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIW 85
+++ +GRVI AEFE F LLN Y PN+G E+ R+ WDK + + Q S KPLI
Sbjct: 87 EHDQEGRVIAAEFENFILLNVYVPNSG--EKLVRLDYRKIWDKELLAYFQQLNSRKPLIA 144
Query: 86 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 145
CGD NV+H+EID++ P+ A N G+T E +L+ G +D
Sbjct: 145 CGDFNVAHQEIDIARPK----ANYN----------KSAGYTQTEIDGISRMLEAG-FVDT 189
Query: 146 YRFLHKEKDMDCGFSWSGNPIGKYRGKRM--RIDYFIVSEEL----KDRIIACEMQGHGI 199
+R LH E +SW G R K + RIDY + S+ L K+ IA ++
Sbjct: 190 FRHLHPET---VAYSWWSYRAGA-RAKNIGWRIDYVLTSQALIGKVKNAFIAPDI----- 240
Query: 200 ELEGFYGSDHCPVSLEL 216
+GSDHCPV +E+
Sbjct: 241 -----FGSDHCPVGIEI 252
>gi|315654117|ref|ZP_07907033.1| exodeoxyribonuclease III [Lactobacillus iners ATCC 55195]
gi|325912295|ref|ZP_08174692.1| putative exodeoxyribonuclease III [Lactobacillus iners UPII 143-D]
gi|315488813|gb|EFU78459.1| exodeoxyribonuclease III [Lactobacillus iners ATCC 55195]
gi|325475954|gb|EGC79123.1| putative exodeoxyribonuclease III [Lactobacillus iners UPII 143-D]
Length = 168
Score = 99.8 bits (247), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 65/191 (34%), Positives = 94/191 (49%), Gaps = 29/191 (15%)
Query: 29 EPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWCG 87
+ +GR+I EF +FYL Y PN+G E R WD + QE++ + KP+I G
Sbjct: 2 DQEGRIITLEFNSFYLTQVYTPNSG--NELKRLADREIWDTKYQEYLTELDQNKPVIASG 59
Query: 88 DLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYR 147
D NV+H+EID+ HPE + GFT ERK F +L G ID +R
Sbjct: 60 DYNVAHQEIDLKHPE---------------TNHHNAGFTDEERKGFSKLLSLG-FIDTFR 103
Query: 148 FLHKEKDMDCGFSWSGNPI--GKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 205
+++ D+ +SW I K RIDY++VS+ L D+I +M G
Sbjct: 104 YIN--GDITDVYSWWSQRIRTSKTNNAGWRIDYYLVSQRLADKIEQSKMIDTGDR----- 156
Query: 206 GSDHCPVSLEL 216
DHCP+ L++
Sbjct: 157 -KDHCPILLKI 166
>gi|315606307|ref|ZP_07881323.1| exodeoxyribonuclease III [Prevotella buccae ATCC 33574]
gi|315251998|gb|EFU31971.1| exodeoxyribonuclease III [Prevotella buccae ATCC 33574]
Length = 249
Score = 99.8 bits (247), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 64/196 (32%), Positives = 99/196 (50%), Gaps = 29/196 (14%)
Query: 23 LSALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK- 81
L +++ +GRVI E E FYL+ Y PN+ ++E R W+ +++ K
Sbjct: 80 LGIEEHDHEGRVITLEMEDFYLITVYTPNS--QDELRRLNYRMTWEDDFLKYIQGLDAKK 137
Query: 82 PLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGR 141
P+I CGDLNV+HEEID+ +P K + GFT ER++ L G
Sbjct: 138 PVIVCGDLNVAHEEIDLKNP---------------KTNRRNAGFTDEEREKMTITLNSG- 181
Query: 142 LIDAYRFLHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIE 200
D++R+ + E+ +S WS + + RIDYF++S L+DR++ ++
Sbjct: 182 FTDSFRYKYPEQ---VTYSWWSYRFHAREKNAGWRIDYFLISNRLRDRLVDAKIHTE--- 235
Query: 201 LEGFYGSDHCPVSLEL 216
YGSDHCPV L+L
Sbjct: 236 ---VYGSDHCPVELDL 248
>gi|288927024|ref|ZP_06420917.1| exodeoxyribonuclease III [Prevotella buccae D17]
gi|288336198|gb|EFC74586.1| exodeoxyribonuclease III [Prevotella buccae D17]
Length = 249
Score = 99.8 bits (247), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 64/196 (32%), Positives = 99/196 (50%), Gaps = 29/196 (14%)
Query: 23 LSALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK- 81
L +++ +GRVI E E FYL+ Y PN+ ++E R W+ +++ K
Sbjct: 80 LGIEEHDHEGRVITLEMEDFYLITVYTPNS--QDELRRLDYRMTWEDDFLKYIQGLDAKK 137
Query: 82 PLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGR 141
P+I CGDLNV+HEEID+ +P K + GFT ER++ L G
Sbjct: 138 PVIVCGDLNVAHEEIDLKNP---------------KTNRRNAGFTDEEREKMTITLNSG- 181
Query: 142 LIDAYRFLHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIE 200
D++R+ + E+ +S WS + + RIDYF++S L+DR++ ++
Sbjct: 182 FTDSFRYKYPEQ---VTYSWWSYRFHAREKNAGWRIDYFLISNRLRDRLVDAKIHTE--- 235
Query: 201 LEGFYGSDHCPVSLEL 216
YGSDHCPV L+L
Sbjct: 236 ---VYGSDHCPVELDL 248
>gi|60652565|gb|AAX28977.1| APEX nuclease 1 [synthetic construct]
Length = 319
Score = 99.8 bits (247), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 63/192 (32%), Positives = 105/192 (54%), Gaps = 25/192 (13%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQ-CSGKPLIW 85
+++ +GRVI+AEF++F L+ Y PN G + R++WD+ ++F+ S KPL+
Sbjct: 150 EHDQEGRVIVAEFDSFVLVTAYVPNAG--RGLVRLEYRQRWDEAFRKFLKGLASRKPLVL 207
Query: 86 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 145
CGDLNV+HEEID+ +P+ NK++ GFT ER+ FG +L+ L D+
Sbjct: 208 CGDLNVAHEEIDLRNPKG------------NKKN---AGFTPQERQGFGELLQAVPLADS 252
Query: 146 YRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 205
+R L+ F W+ + + R+DYF++S L + +++ +
Sbjct: 253 FRHLYPNTPYAYTF-WTYMMNARSKNVGWRLDYFLLSHSLLPALCDSKIRSKAL------ 305
Query: 206 GSDHCPVSLELS 217
GSDHCP++L L+
Sbjct: 306 GSDHCPITLYLA 317
>gi|45361461|ref|NP_989307.1| APEX nuclease (multifunctional DNA repair enzyme) 1 [Xenopus
(Silurana) tropicalis]
gi|39794455|gb|AAH64266.1| hypothetical protein MGC76280 [Xenopus (Silurana) tropicalis]
gi|51703687|gb|AAH80950.1| hypothetical protein MGC76280 [Xenopus (Silurana) tropicalis]
gi|89267865|emb|CAJ83004.1| APEX nuclease (multifunctional DNA repair enzyme) 1 [Xenopus
(Silurana) tropicalis]
Length = 316
Score = 99.8 bits (247), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 65/208 (31%), Positives = 110/208 (52%), Gaps = 27/208 (12%)
Query: 12 LCNNSSV-FHFLLSALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKR 70
LC + + + + +++ +GRVI AEF++F+L+ Y PN+ R++WD
Sbjct: 133 LCKDKPLNVTYGIGIEEHDKEGRVITAEFDSFFLIAAYVPNSS--RGLVRLDYRQRWDVD 190
Query: 71 IQEFVLQC-SGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAE 129
+ ++ S KPLI CGDLNV+H+EID+ +P K + PGFT E
Sbjct: 191 FRAYLKGLDSKKPLILCGDLNVAHQEIDLKNP---------------KTNKKTPGFTPQE 235
Query: 130 RKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRI 189
R+ FG +L EG L D++R L+ +K F W+ + + R+DYF++S+ L+ +
Sbjct: 236 RQGFGELLAEGYL-DSFRELYPDKPSAYTF-WTYMMNARAKNVGWRLDYFVLSKALRPAL 293
Query: 190 IACEMQGHGIELEGFYGSDHCPVSLELS 217
+++ GSDHCP++L ++
Sbjct: 294 CDSKVRSK------IMGSDHCPITLLMA 315
>gi|219478|dbj|BAA14381.1| apurinic/apyrimidinic endonuclease [Homo sapiens]
Length = 318
Score = 99.8 bits (247), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 63/192 (32%), Positives = 105/192 (54%), Gaps = 25/192 (13%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQ-CSGKPLIW 85
+++ +GRVI+AEF++F L+ Y PN G + R++WD+ ++F+ S KPL+
Sbjct: 150 EHDQEGRVIVAEFDSFVLVTAYVPNAG--RGLVRLEYRQRWDEAFRKFLKGLASRKPLVL 207
Query: 86 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 145
CGDLNV+HEEID+ +P+ NK++ GFT ER+ FG +L+ L D+
Sbjct: 208 CGDLNVAHEEIDLRNPKG------------NKKN---AGFTPQERQGFGELLQAVPLADS 252
Query: 146 YRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 205
+R L+ F W+ + + R+DYF++S L + +++ +
Sbjct: 253 FRHLYPNTPYAYTF-WTYMMNARSKNVGWRLDYFLLSHSLLPALCDSKIRSKAL------ 305
Query: 206 GSDHCPVSLELS 217
GSDHCP++L L+
Sbjct: 306 GSDHCPITLYLA 317
>gi|420489725|ref|ZP_14988317.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-11]
gi|420523659|ref|ZP_15022077.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-11b]
gi|393105146|gb|EJC05697.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-11]
gi|393126008|gb|EJC26460.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-11b]
Length = 250
Score = 99.4 bits (246), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 63/191 (32%), Positives = 98/191 (51%), Gaps = 26/191 (13%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIW 85
+++ +GRV+ EFE+FYL+N Y PN+ ++ + R W+ ++F+ KP+I
Sbjct: 84 EHDKEGRVVTCEFESFYLVNVYTPNS--QQALSRLSYRMNWEVEFKKFLKALELKKPVIV 141
Query: 86 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 145
CGDLNV+H EID+ +P K + GF+ ER++F +L G ID
Sbjct: 142 CGDLNVAHNEIDLENP---------------KTNRKNAGFSDEEREKFSELLNAG-FIDT 185
Query: 146 YRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 205
+R+ + K+ + WS + + RIDYF+ S LK R+ + +
Sbjct: 186 FRYFYPNKEKAYTW-WSYMQQARDKDIGWRIDYFLCSNPLKTRL------KDALIYKDIL 238
Query: 206 GSDHCPVSLEL 216
GSDHCPV LEL
Sbjct: 239 GSDHCPVGLEL 249
>gi|125490347|ref|NP_001074954.1| DNA-(apurinic or apyrimidinic site) lyase [Pan troglodytes]
gi|397481065|ref|XP_003811777.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase [Pan paniscus]
gi|397481067|ref|XP_003811778.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase [Pan paniscus]
gi|397481069|ref|XP_003811779.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase [Pan paniscus]
gi|146286033|sp|A1YFZ3.1|APEX1_PANPA RecName: Full=DNA-(apurinic or apyrimidinic site) lyase; AltName:
Full=APEX nuclease; Short=APEN; AltName:
Full=Apurinic-apyrimidinic endonuclease 1; Short=AP
endonuclease 1; AltName: Full=REF-1; AltName: Full=Redox
factor-1; Contains: RecName: Full=DNA-(apurinic or
apyrimidinic site) lyase, mitochondrial
gi|146286034|sp|A2T6Y4.1|APEX1_PANTR RecName: Full=DNA-(apurinic or apyrimidinic site) lyase; AltName:
Full=APEX nuclease; Short=APEN; AltName:
Full=Apurinic-apyrimidinic endonuclease 1; Short=AP
endonuclease 1; AltName: Full=REF-1; AltName: Full=Redox
factor-1; Contains: RecName: Full=DNA-(apurinic or
apyrimidinic site) lyase, mitochondrial
gi|219474|dbj|BAA02633.1| APEX nuclease [Homo sapiens]
gi|1710232|gb|AAB50212.1| apurinic/apyrimidinic endonuclease [Homo sapiens]
gi|12803075|gb|AAH02338.1| APEX nuclease (multifunctional DNA repair enzyme) 1 [Homo sapiens]
gi|14198174|gb|AAH08145.1| APEX nuclease (multifunctional DNA repair enzyme) 1 [Homo sapiens]
gi|17939646|gb|AAH19291.1| APEX nuclease (multifunctional DNA repair enzyme) 1 [Homo sapiens]
gi|30583311|gb|AAP35900.1| APEX nuclease (multifunctional DNA repair enzyme) 1 [Homo sapiens]
gi|61358640|gb|AAX41599.1| APEX nuclease 1 [synthetic construct]
gi|61362429|gb|AAX42220.1| APEX nuclease 1 [synthetic construct]
gi|61362434|gb|AAX42221.1| APEX nuclease 1 [synthetic construct]
gi|121483845|gb|ABM54218.1| APEX1 [Pan paniscus]
gi|123981822|gb|ABM82740.1| APEX nuclease (multifunctional DNA repair enzyme) 1 [synthetic
construct]
gi|123996645|gb|ABM85924.1| APEX nuclease (multifunctional DNA repair enzyme) 1 [synthetic
construct]
gi|124111123|gb|ABM91939.1| APEX1 [Pan troglodytes]
gi|208965824|dbj|BAG72926.1| APEX nuclease (multifunctional DNA repair enzyme) 1 [synthetic
construct]
gi|410220880|gb|JAA07659.1| APEX nuclease (multifunctional DNA repair enzyme) 1 [Pan
troglodytes]
gi|410220882|gb|JAA07660.1| APEX nuclease (multifunctional DNA repair enzyme) 1 [Pan
troglodytes]
gi|410220884|gb|JAA07661.1| APEX nuclease (multifunctional DNA repair enzyme) 1 [Pan
troglodytes]
gi|410256572|gb|JAA16253.1| APEX nuclease (multifunctional DNA repair enzyme) 1 [Pan
troglodytes]
gi|410256574|gb|JAA16254.1| APEX nuclease (multifunctional DNA repair enzyme) 1 [Pan
troglodytes]
gi|410256576|gb|JAA16255.1| APEX nuclease (multifunctional DNA repair enzyme) 1 [Pan
troglodytes]
gi|410294028|gb|JAA25614.1| APEX nuclease (multifunctional DNA repair enzyme) 1 [Pan
troglodytes]
gi|410294030|gb|JAA25615.1| APEX nuclease (multifunctional DNA repair enzyme) 1 [Pan
troglodytes]
gi|410294032|gb|JAA25616.1| APEX nuclease (multifunctional DNA repair enzyme) 1 [Pan
troglodytes]
gi|1090503|prf||2019234A APEX nuclease
Length = 318
Score = 99.4 bits (246), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 63/192 (32%), Positives = 105/192 (54%), Gaps = 25/192 (13%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQ-CSGKPLIW 85
+++ +GRVI+AEF++F L+ Y PN G + R++WD+ ++F+ S KPL+
Sbjct: 150 EHDQEGRVIVAEFDSFVLVTAYVPNAG--RGLVRLEYRQRWDEAFRKFLKGLASRKPLVL 207
Query: 86 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 145
CGDLNV+HEEID+ +P+ NK++ GFT ER+ FG +L+ L D+
Sbjct: 208 CGDLNVAHEEIDLRNPKG------------NKKN---AGFTPQERQGFGELLQAVPLADS 252
Query: 146 YRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 205
+R L+ F W+ + + R+DYF++S L + +++ +
Sbjct: 253 FRHLYPNTPYAYTF-WTYMMNARSKNVGWRLDYFLLSHSLLPALCDSKIRSKAL------ 305
Query: 206 GSDHCPVSLELS 217
GSDHCP++L L+
Sbjct: 306 GSDHCPITLYLA 317
>gi|420481469|ref|ZP_14980108.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-1]
gi|420510358|ref|ZP_15008848.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-1b]
gi|393094477|gb|EJB95086.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-1]
gi|393122099|gb|EJC22576.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-1b]
Length = 250
Score = 99.4 bits (246), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 63/191 (32%), Positives = 98/191 (51%), Gaps = 26/191 (13%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIW 85
+++ +GRV+ EFE+FYL+N Y PN+ ++ + R W+ ++F+ KP+I
Sbjct: 84 EHDKEGRVVTCEFESFYLVNVYTPNS--QQALSRLSYRMNWEVEFKKFLKALELKKPVIV 141
Query: 86 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 145
CGDLNV+H EID+ +P K + GF+ ER++F +L G ID
Sbjct: 142 CGDLNVAHNEIDLENP---------------KTNRKNAGFSDEEREKFSELLNAG-FIDT 185
Query: 146 YRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 205
+R+ + K+ + WS + + RIDYF+ S LK R+ + +
Sbjct: 186 FRYFYPNKEKAYTW-WSYMQQARDKDIGWRIDYFLCSNPLKTRL------KDALIYKDIL 238
Query: 206 GSDHCPVSLEL 216
GSDHCPV LEL
Sbjct: 239 GSDHCPVGLEL 249
>gi|226322793|ref|ZP_03798311.1| hypothetical protein COPCOM_00565 [Coprococcus comes ATCC 27758]
gi|225208774|gb|EEG91128.1| exodeoxyribonuclease III [Coprococcus comes ATCC 27758]
Length = 231
Score = 99.4 bits (246), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 63/191 (32%), Positives = 97/191 (50%), Gaps = 26/191 (13%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIW 85
+++ +GRVI EFE FY + Y PN+ + E R W+ ++ + KP+I+
Sbjct: 65 EHDQEGRVITLEFEDFYFITVYTPNS--QSELARLDYRMTWEDAFLAYLKKLEETKPVIF 122
Query: 86 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 145
CGDLNV+H+EID+ +P K + GFT ER +F A+L G ID
Sbjct: 123 CGDLNVAHKEIDLKNP---------------KTNRKNAGFTDEERAKFSALLDAG-FIDT 166
Query: 146 YRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 205
YR+ + +K+ + WS + + RIDYF S+ L+ R+ ++ L +
Sbjct: 167 YRYFYPDKEGIYSW-WSYRFKAREKNAGWRIDYFCTSKALESRLEDAKI------LTNVF 219
Query: 206 GSDHCPVSLEL 216
GSDHCPV L+
Sbjct: 220 GSDHCPVELDF 230
>gi|18375501|ref|NP_001632.2| DNA-(apurinic or apyrimidinic site) lyase [Homo sapiens]
gi|18375503|ref|NP_542379.1| DNA-(apurinic or apyrimidinic site) lyase [Homo sapiens]
gi|18375505|ref|NP_542380.1| DNA-(apurinic or apyrimidinic site) lyase [Homo sapiens]
gi|346644849|ref|NP_001231178.1| DNA-(apurinic or apyrimidinic site) lyase [Homo sapiens]
gi|113984|sp|P27695.2|APEX1_HUMAN RecName: Full=DNA-(apurinic or apyrimidinic site) lyase; AltName:
Full=APEX nuclease; Short=APEN; AltName:
Full=Apurinic-apyrimidinic endonuclease 1; Short=AP
endonuclease 1; Short=APE-1; AltName: Full=REF-1;
AltName: Full=Redox factor-1; Contains: RecName:
Full=DNA-(apurinic or apyrimidinic site) lyase,
mitochondrial
gi|13399540|pdb|1E9N|A Chain A, A Second Divalent Metal Ion In The Active Site Of A New
Crystal Form Of Human ApurinicAPYRIMIDINIC ENDONUCLEASE,
Ape1, And Its Implications For The Catalytic Mechanism
gi|13399541|pdb|1E9N|B Chain B, A Second Divalent Metal Ion In The Active Site Of A New
Crystal Form Of Human ApurinicAPYRIMIDINIC ENDONUCLEASE,
Ape1, And Its Implications For The Catalytic Mechanism
gi|13399606|pdb|1HD7|A Chain A, A Second Divalent Metal Ion In The Active Site Of A New
Crystal Form Of Human ApurinicAPYRIDINIMIC ENDONUCLEASE,
Ape1, And Its Implications For The Catalytic Mechanism
gi|354459810|pdb|3U8U|A Chain A, Crystal Structure Of Human ApurinicAPYRIDINIMIC
ENDONUCLEASE, APE1 IN A New Crystal Form
gi|354459811|pdb|3U8U|B Chain B, Crystal Structure Of Human ApurinicAPYRIDINIMIC
ENDONUCLEASE, APE1 IN A New Crystal Form
gi|354459812|pdb|3U8U|C Chain C, Crystal Structure Of Human ApurinicAPYRIDINIMIC
ENDONUCLEASE, APE1 IN A New Crystal Form
gi|354459813|pdb|3U8U|D Chain D, Crystal Structure Of Human ApurinicAPYRIDINIMIC
ENDONUCLEASE, APE1 IN A New Crystal Form
gi|354459814|pdb|3U8U|E Chain E, Crystal Structure Of Human ApurinicAPYRIDINIMIC
ENDONUCLEASE, APE1 IN A New Crystal Form
gi|354459815|pdb|3U8U|F Chain F, Crystal Structure Of Human ApurinicAPYRIDINIMIC
ENDONUCLEASE, APE1 IN A New Crystal Form
gi|19339022|gb|AAL86909.1|AF488551_1 APEX nuclease (multifunctional DNA repair enzyme) [Homo sapiens]
gi|32022|emb|CAA46925.1| AP endonuclease 1 [Homo sapiens]
gi|178747|gb|AAA58372.1| apurinic/apyrimidinic endonuclease [Homo sapiens]
gi|183780|gb|AAA58629.1| apurinic/apyrimidinic endonuclease [Homo sapiens]
gi|254069|gb|AAB22977.1| Ref-1 [Homo sapiens]
gi|13436404|gb|AAH04979.1| APEX nuclease (multifunctional DNA repair enzyme) 1 [Homo sapiens]
gi|28071072|emb|CAD61917.1| unnamed protein product [Homo sapiens]
gi|54697126|gb|AAV38935.1| APEX nuclease (multifunctional DNA repair enzyme) 1 [Homo sapiens]
gi|60655677|gb|AAX32402.1| APEX nuclease 1 [synthetic construct]
gi|61358645|gb|AAX41600.1| APEX nuclease 1 [synthetic construct]
gi|63100763|gb|AAH95428.1| APEX nuclease (multifunctional DNA repair enzyme) 1 [Homo sapiens]
gi|119586867|gb|EAW66463.1| APEX nuclease (multifunctional DNA repair enzyme) 1, isoform CRA_a
[Homo sapiens]
gi|119586868|gb|EAW66464.1| APEX nuclease (multifunctional DNA repair enzyme) 1, isoform CRA_a
[Homo sapiens]
gi|119586869|gb|EAW66465.1| APEX nuclease (multifunctional DNA repair enzyme) 1, isoform CRA_a
[Homo sapiens]
gi|119586870|gb|EAW66466.1| APEX nuclease (multifunctional DNA repair enzyme) 1, isoform CRA_a
[Homo sapiens]
gi|119586871|gb|EAW66467.1| APEX nuclease (multifunctional DNA repair enzyme) 1, isoform CRA_a
[Homo sapiens]
gi|119586872|gb|EAW66468.1| APEX nuclease (multifunctional DNA repair enzyme) 1, isoform CRA_a
[Homo sapiens]
gi|158255636|dbj|BAF83789.1| unnamed protein product [Homo sapiens]
Length = 318
Score = 99.4 bits (246), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 63/192 (32%), Positives = 105/192 (54%), Gaps = 25/192 (13%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQ-CSGKPLIW 85
+++ +GRVI+AEF++F L+ Y PN G + R++WD+ ++F+ S KPL+
Sbjct: 150 EHDQEGRVIVAEFDSFVLVTAYVPNAG--RGLVRLEYRQRWDEAFRKFLKGLASRKPLVL 207
Query: 86 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 145
CGDLNV+HEEID+ +P+ NK++ GFT ER+ FG +L+ L D+
Sbjct: 208 CGDLNVAHEEIDLRNPKG------------NKKN---AGFTPQERQGFGELLQAVPLADS 252
Query: 146 YRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 205
+R L+ F W+ + + R+DYF++S L + +++ +
Sbjct: 253 FRHLYPNTPYAYTF-WTYMMNARSKNVGWRLDYFLLSHSLLPALCDSKIRSKAL------ 305
Query: 206 GSDHCPVSLELS 217
GSDHCP++L L+
Sbjct: 306 GSDHCPITLYLA 317
>gi|420483017|ref|ZP_14981651.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-2]
gi|393097621|gb|EJB98214.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-2]
Length = 250
Score = 99.4 bits (246), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 63/191 (32%), Positives = 98/191 (51%), Gaps = 26/191 (13%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIW 85
+++ +GRV+ EFE+FYL+N Y PN+ ++ + R W+ ++F+ KP+I
Sbjct: 84 EHDKEGRVVTCEFESFYLVNVYTPNS--QQALSRLSYRMSWEVEFKKFLKALELKKPVIV 141
Query: 86 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 145
CGDLNV+H EID+ +P K + GF+ ER++F +L G ID
Sbjct: 142 CGDLNVAHNEIDLENP---------------KTNRKNAGFSDEEREKFSELLNAG-FIDT 185
Query: 146 YRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 205
+R+ + K+ + WS + + RIDYF+ S LK R+ + +
Sbjct: 186 FRYFYPNKEKAYTW-WSYMQQARDKDIGWRIDYFLCSNPLKTRL------KDALIYKDIL 238
Query: 206 GSDHCPVSLEL 216
GSDHCPV LEL
Sbjct: 239 GSDHCPVGLEL 249
>gi|374631714|ref|ZP_09704088.1| exodeoxyribonuclease III [Metallosphaera yellowstonensis MK1]
gi|373525544|gb|EHP70324.1| exodeoxyribonuclease III [Metallosphaera yellowstonensis MK1]
Length = 245
Score = 99.4 bits (246), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 70/198 (35%), Positives = 97/198 (48%), Gaps = 27/198 (13%)
Query: 19 FHFLLSALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC 78
F + + +++ +GRVI EF FY++N Y PN+G E Q + +D+ QEFV
Sbjct: 74 FRYGIGREEFDSEGRVITLEFPDFYVVNAYFPNSG--EGLRRLQFKLSFDEAFQEFVGSL 131
Query: 79 SGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILK 138
KPL+ CGD NV+HEEID++ PE E+ GFT ER+ F L
Sbjct: 132 R-KPLVVCGDFNVAHEEIDIARPE---------------ENEDHAGFTREEREWFHKFLL 175
Query: 139 EGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHG 198
G +D +R KE WS + R RIDY +VS EL R+ +
Sbjct: 176 SG-FVDTFRMFVKEGGHYSW--WSYRTKARERNVGWRIDYCLVSAELAGRVRRANI---- 228
Query: 199 IELEGFYGSDHCPVSLEL 216
LE GSDH P++L+L
Sbjct: 229 --LEDMMGSDHAPITLQL 244
>gi|30585287|gb|AAP36916.1| Homo sapiens APEX nuclease (multifunctional DNA repair enzyme) 1
[synthetic construct]
gi|60653967|gb|AAX29676.1| APEX nuclease 1 [synthetic construct]
Length = 319
Score = 99.4 bits (246), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 63/192 (32%), Positives = 105/192 (54%), Gaps = 25/192 (13%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQ-CSGKPLIW 85
+++ +GRVI+AEF++F L+ Y PN G + R++WD+ ++F+ S KPL+
Sbjct: 150 EHDQEGRVIVAEFDSFVLVTAYVPNAG--RGLVRLEYRQRWDEAFRKFLKGLASRKPLVL 207
Query: 86 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 145
CGDLNV+HEEID+ +P+ NK++ GFT ER+ FG +L+ L D+
Sbjct: 208 CGDLNVAHEEIDLRNPKG------------NKKN---AGFTPQERQGFGELLQAVPLADS 252
Query: 146 YRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 205
+R L+ F W+ + + R+DYF++S L + +++ +
Sbjct: 253 FRHLYPNTPYAYTF-WTYMMNARSKNVGWRLDYFLLSHSLLPALCDSKIRSKAL------ 305
Query: 206 GSDHCPVSLELS 217
GSDHCP++L L+
Sbjct: 306 GSDHCPITLYLA 317
>gi|296214367|ref|XP_002753758.1| PREDICTED: uncharacterized protein LOC100400557 isoform 1
[Callithrix jacchus]
gi|296214369|ref|XP_002753759.1| PREDICTED: uncharacterized protein LOC100400557 isoform 2
[Callithrix jacchus]
Length = 318
Score = 99.4 bits (246), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 63/192 (32%), Positives = 105/192 (54%), Gaps = 25/192 (13%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQ-CSGKPLIW 85
+++ +GRVI+AEF++F L+ Y PN G + R++WD+ ++F+ S KPL+
Sbjct: 150 EHDQEGRVIVAEFDSFVLVTAYVPNAG--RGLVRLEYRQRWDEAFRKFLKGLASRKPLVL 207
Query: 86 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 145
CGDLNV+HEEID+ +P+ NK++ GFT ER+ FG +L+ L D+
Sbjct: 208 CGDLNVAHEEIDLRNPKG------------NKKN---AGFTPQERQGFGELLQAVPLADS 252
Query: 146 YRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 205
+R L+ F W+ + + R+DYF++S L + +++ +
Sbjct: 253 FRHLYPNTAYAYTF-WTYMMNARSKNVGWRLDYFLLSHSLLPALCDSKIRSKAL------ 305
Query: 206 GSDHCPVSLELS 217
GSDHCP++L L+
Sbjct: 306 GSDHCPITLYLA 317
>gi|213021237|ref|NP_001132943.1| DNA-(apurinic or apyrimidinic site) lyase [Sus scrofa]
gi|210062866|gb|ACJ06403.1| APEX nuclease 1 [Sus scrofa]
Length = 318
Score = 99.4 bits (246), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 63/192 (32%), Positives = 104/192 (54%), Gaps = 25/192 (13%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQ-CSGKPLIW 85
+++ +GRVI+AEF+ F L+ Y PN G + R++WD+ ++F+ S KPL+
Sbjct: 150 EHDQEGRVIVAEFDAFVLVTAYVPNAG--RGLVRLEYRQRWDEAFRKFLKGLASHKPLVL 207
Query: 86 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 145
CGDLNV+HEEID+ +P+ NK++ GFT ER+ FG +L+ L D+
Sbjct: 208 CGDLNVAHEEIDLRNPKG------------NKKN---AGFTPQERQGFGELLQAVPLADS 252
Query: 146 YRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 205
+R L+ F W+ + + R+DYF++S L + +++ +
Sbjct: 253 FRHLYPNTAYAYTF-WTYMMNARSKNVGWRLDYFLLSHSLLPALCDSKIRSKAL------ 305
Query: 206 GSDHCPVSLELS 217
GSDHCP++L L+
Sbjct: 306 GSDHCPITLYLA 317
>gi|421720502|ref|ZP_16159782.1| exodeoxyribonuclease III [Helicobacter pylori R046Wa]
gi|407219094|gb|EKE88911.1| exodeoxyribonuclease III [Helicobacter pylori R046Wa]
Length = 250
Score = 99.4 bits (246), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 64/191 (33%), Positives = 97/191 (50%), Gaps = 26/191 (13%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIW 85
+++ +GRVI EFE+FYL+N Y PN+ ++ + R W+ ++F+ KP+I
Sbjct: 84 EHDKEGRVITCEFESFYLVNVYTPNS--QQALSRLNYRMSWEVEFKKFLKALELKKPVIV 141
Query: 86 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 145
CGDLNV+H EID+ +P K + GF+ ER +F +L G ID
Sbjct: 142 CGDLNVAHNEIDLENP---------------KTNRKNAGFSDEERGKFSELLNAG-FIDT 185
Query: 146 YRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 205
+R+ + K+ + WS + + RIDYF+ S LK R+ + +
Sbjct: 186 FRYFYPNKEKAYTW-WSYMQQARDKNIGWRIDYFLCSNPLKTRL------KDALIYKDIL 238
Query: 206 GSDHCPVSLEL 216
GSDHCPV LEL
Sbjct: 239 GSDHCPVGLEL 249
>gi|403289383|ref|XP_003935839.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase [Saimiri
boliviensis boliviensis]
gi|403289385|ref|XP_003935840.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase [Saimiri
boliviensis boliviensis]
Length = 318
Score = 99.4 bits (246), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 63/192 (32%), Positives = 105/192 (54%), Gaps = 25/192 (13%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQ-CSGKPLIW 85
+++ +GRVI+AEF++F L+ Y PN G + R++WD+ ++F+ S KPL+
Sbjct: 150 EHDQEGRVIVAEFDSFVLVTAYVPNAG--RGLVRLEYRQRWDEAFRKFLKGLASRKPLVL 207
Query: 86 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 145
CGDLNV+HEEID+ +P+ NK++ GFT ER+ FG +L+ L D+
Sbjct: 208 CGDLNVAHEEIDLRNPKG------------NKKN---AGFTPQERQGFGELLQAVPLADS 252
Query: 146 YRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 205
+R L+ F W+ + + R+DYF++S L + +++ +
Sbjct: 253 FRHLYPNTAYAYTF-WTYMMNARSKNVGWRLDYFLLSHSLLPALCDSKIRSKAL------ 305
Query: 206 GSDHCPVSLELS 217
GSDHCP++L L+
Sbjct: 306 GSDHCPITLYLA 317
>gi|402308513|ref|ZP_10827517.1| exodeoxyribonuclease III [Prevotella sp. MSX73]
gi|400374964|gb|EJP27874.1| exodeoxyribonuclease III [Prevotella sp. MSX73]
Length = 242
Score = 99.4 bits (246), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 64/196 (32%), Positives = 99/196 (50%), Gaps = 29/196 (14%)
Query: 23 LSALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK- 81
L +++ +GRVI E E FYL+ Y PN+ ++E R W+ +++ K
Sbjct: 73 LGIEEHDHEGRVITLEMEDFYLITVYTPNS--QDELRRLDYRMTWEDDFLKYIQGLDAKK 130
Query: 82 PLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGR 141
P+I CGDLNV+HEEID+ +P K + GFT ER++ L G
Sbjct: 131 PVIVCGDLNVAHEEIDLKNP---------------KTNRRNAGFTDEEREKMTITLNSG- 174
Query: 142 LIDAYRFLHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIE 200
D++R+ + E+ +S WS + + RIDYF++S L+DR++ ++
Sbjct: 175 FTDSFRYKYPEQ---VTYSWWSYRFHAREKNAGWRIDYFLISNRLRDRLVDAKIHTE--- 228
Query: 201 LEGFYGSDHCPVSLEL 216
YGSDHCPV L+L
Sbjct: 229 ---VYGSDHCPVELDL 241
>gi|420466271|ref|ZP_14965031.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-6]
gi|393078846|gb|EJB79584.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-6]
Length = 250
Score = 99.4 bits (246), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 63/191 (32%), Positives = 98/191 (51%), Gaps = 26/191 (13%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIW 85
+++ +GRV+ EFE+FYL+N Y PN+ ++ + R W+ ++F+ KP+I
Sbjct: 84 EHDKEGRVVTCEFESFYLVNVYTPNS--QQALSRLSYRMSWEVEFKKFLKALELKKPVIV 141
Query: 86 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 145
CGDLNV+H EID+ +P K + GF+ ER++F +L G ID
Sbjct: 142 CGDLNVAHNEIDLENP---------------KTNRKNAGFSDEEREKFNELLNAG-FIDT 185
Query: 146 YRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 205
+R+ + K+ + WS + + RIDYF+ S LK R+ + +
Sbjct: 186 FRYFYPNKEKAYTW-WSYMQQARDKDIGWRIDYFLCSNPLKTRL------KDALIYKDIL 238
Query: 206 GSDHCPVSLEL 216
GSDHCPV LEL
Sbjct: 239 GSDHCPVGLEL 249
>gi|420415952|ref|ZP_14915065.1| exodeoxyribonuclease III [Helicobacter pylori NQ4053]
gi|393031857|gb|EJB32928.1| exodeoxyribonuclease III [Helicobacter pylori NQ4053]
Length = 250
Score = 99.4 bits (246), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 63/191 (32%), Positives = 98/191 (51%), Gaps = 26/191 (13%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIW 85
+++ +GRV+ EFE+FYL+N Y PN+ ++ + R W+ ++F+ KP+I
Sbjct: 84 EHDKEGRVVTCEFESFYLVNVYTPNS--QQALSRLSYRMSWEVEFKKFLKALELKKPVIV 141
Query: 86 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 145
CGDLNV+H EID+ +P K + GF+ ER++F +L G ID
Sbjct: 142 CGDLNVAHNEIDLENP---------------KTNRKNAGFSDEEREKFSELLNAG-FIDT 185
Query: 146 YRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 205
+R+ + K+ + WS + + RIDYF+ S LK R+ + +
Sbjct: 186 FRYFYPNKEKAYTW-WSYMQQARDKDIGWRIDYFLCSNPLKTRL------KDALIYKDIL 238
Query: 206 GSDHCPVSLEL 216
GSDHCPV LEL
Sbjct: 239 GSDHCPVGLEL 249
>gi|420499520|ref|ZP_14998076.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-26]
gi|393151722|gb|EJC52025.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-26]
Length = 250
Score = 99.4 bits (246), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 63/191 (32%), Positives = 98/191 (51%), Gaps = 26/191 (13%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIW 85
+++ +GRV+ EFE+FYL+N Y PN+ ++ + R W+ ++F+ KP+I
Sbjct: 84 EHDKEGRVVTCEFESFYLVNVYTPNS--QQALSRLSYRMSWEVEFKKFLKALELKKPVIV 141
Query: 86 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 145
CGDLNV+H EID+ +P K + GF+ ER++F +L G ID
Sbjct: 142 CGDLNVAHNEIDLENP---------------KTNRKNAGFSDEEREKFSELLNAG-FIDT 185
Query: 146 YRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 205
+R+ + K+ + WS + + RIDYF+ S LK R+ + +
Sbjct: 186 FRYFYPNKEKAYTW-WSYMQQARDKDIGWRIDYFLCSNPLKTRL------KDALIYKDIL 238
Query: 206 GSDHCPVSLEL 216
GSDHCPV LEL
Sbjct: 239 GSDHCPVGLEL 249
>gi|308233639|ref|ZP_07664376.1| exodeoxyribonuclease III Xth [Atopobium vaginae DSM 15829]
gi|328944401|ref|ZP_08241863.1| exodeoxyribonuclease III [Atopobium vaginae DSM 15829]
gi|327490985|gb|EGF22762.1| exodeoxyribonuclease III [Atopobium vaginae DSM 15829]
Length = 259
Score = 99.4 bits (246), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 65/188 (34%), Positives = 94/188 (50%), Gaps = 28/188 (14%)
Query: 31 DGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGDL 89
+GRV EFE F+ ++ Y PN+ K E R +WDK +EF++ KP+I CGD
Sbjct: 96 EGRVCALEFEKFWFVDVYTPNS--KNELARLDERMEWDKAYREFLVGLDAQKPVITCGDF 153
Query: 90 NVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFL 149
NV+H+EID+ +P N E+ GF+ ER F ++L G D +R
Sbjct: 154 NVAHQEIDLKNP------------ASNHEN---AGFSDEERAGFSSLLGAG-FTDTFRSA 197
Query: 150 HKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSD 208
H ++ +S WS + R RIDYF+VS + + + + + YGSD
Sbjct: 198 HPT--LEGAYSWWSYRMRSRERNAGWRIDYFLVSNRIANTVTSSAIYNE------IYGSD 249
Query: 209 HCPVSLEL 216
HCPV LEL
Sbjct: 250 HCPVGLEL 257
>gi|118138505|pdb|2ISI|A Chain A, Crystal Structure Of Ape1 From Homo Sapiens In A New
Crystal Form Complexed With A Ligand
gi|118138506|pdb|2ISI|B Chain B, Crystal Structure Of Ape1 From Homo Sapiens In A New
Crystal Form Complexed With A Ligand
gi|118138507|pdb|2ISI|C Chain C, Crystal Structure Of Ape1 From Homo Sapiens In A New
Crystal Form Complexed With A Ligand
gi|443428279|pdb|4IEM|A Chain A, Human Apurinic/apyrimidinic Endonuclease (ape1) With
Product Dna And Mg2+
gi|443428283|pdb|4IEM|B Chain B, Human Apurinic/apyrimidinic Endonuclease (ape1) With
Product Dna And Mg2+
gi|443428287|pdb|4IEM|C Chain C, Human Apurinic/apyrimidinic Endonuclease (ape1) With
Product Dna And Mg2+
gi|443428291|pdb|4IEM|D Chain D, Human Apurinic/apyrimidinic Endonuclease (ape1) With
Product Dna And Mg2+
Length = 317
Score = 99.4 bits (246), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 63/192 (32%), Positives = 105/192 (54%), Gaps = 25/192 (13%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQ-CSGKPLIW 85
+++ +GRVI+AEF++F L+ Y PN G + R++WD+ ++F+ S KPL+
Sbjct: 149 EHDQEGRVIVAEFDSFVLVTAYVPNAG--RGLVRLEYRQRWDEAFRKFLKGLASRKPLVL 206
Query: 86 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 145
CGDLNV+HEEID+ +P+ NK++ GFT ER+ FG +L+ L D+
Sbjct: 207 CGDLNVAHEEIDLRNPKG------------NKKN---AGFTPQERQGFGELLQAVPLADS 251
Query: 146 YRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 205
+R L+ F W+ + + R+DYF++S L + +++ +
Sbjct: 252 FRHLYPNTPYAYTF-WTYMMNARSKNVGWRLDYFLLSHSLLPALCDSKIRSKAL------ 304
Query: 206 GSDHCPVSLELS 217
GSDHCP++L L+
Sbjct: 305 GSDHCPITLYLA 316
>gi|297694584|ref|XP_002824554.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase isoform 1
[Pongo abelii]
gi|395745632|ref|XP_003778302.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase [Pongo abelii]
gi|395745635|ref|XP_003778303.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase [Pongo abelii]
gi|146286035|sp|A2T7I6.1|APEX1_PONPY RecName: Full=DNA-(apurinic or apyrimidinic site) lyase; AltName:
Full=APEX nuclease; Short=APEN; AltName:
Full=Apurinic-apyrimidinic endonuclease 1; Short=AP
endonuclease 1; AltName: Full=REF-1; AltName: Full=Redox
factor-1; Contains: RecName: Full=DNA-(apurinic or
apyrimidinic site) lyase, mitochondrial
gi|124054149|gb|ABM89264.1| APEX1 [Pongo pygmaeus]
Length = 318
Score = 99.4 bits (246), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 63/192 (32%), Positives = 104/192 (54%), Gaps = 25/192 (13%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQ-CSGKPLIW 85
+++ +GRVI+AEF++F L+ Y PN G + R++WD+ + F+ S KPL+
Sbjct: 150 EHDQEGRVIVAEFDSFVLVTAYVPNAG--RGLVRLEYRQRWDEAFRRFLKGLASRKPLVL 207
Query: 86 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 145
CGDLNV+HEEID+ +P+ NK++ GFT ER+ FG +L+ L D+
Sbjct: 208 CGDLNVAHEEIDLRNPKG------------NKKN---AGFTPQERQGFGELLQAVPLADS 252
Query: 146 YRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 205
+R L+ F W+ + + R+DYF++S L + +++ +
Sbjct: 253 FRHLYPNTPYAYTF-WTYMMNARSKNVGWRLDYFLLSHSLLTALCDSKIRSKAL------ 305
Query: 206 GSDHCPVSLELS 217
GSDHCP++L L+
Sbjct: 306 GSDHCPITLYLA 317
>gi|389575850|ref|ZP_10165878.1| exodeoxyribonuclease III [Eubacterium cellulosolvens 6]
gi|389311335|gb|EIM56268.1| exodeoxyribonuclease III [Eubacterium cellulosolvens 6]
Length = 250
Score = 99.4 bits (246), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 64/193 (33%), Positives = 102/193 (52%), Gaps = 29/193 (15%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIW 85
+++ +GRVI E++TF+L+ Y PN+ ++ R W+ + ++ + KP+I
Sbjct: 84 EHDHEGRVITLEYDTFFLVTVYTPNS--QDGLKRLDYRMTWEDSFRAYLGKLDEKKPVIV 141
Query: 86 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 145
CGDLNV+HEEID+ +P K + GFT ER +F +L G D+
Sbjct: 142 CGDLNVAHEEIDLKNP---------------KTNRKNAGFTDEERGKFTELLDAG-FTDS 185
Query: 146 YRFLHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGF 204
+R+LH E D +S WS + + RIDYF+ SE +K++I + +
Sbjct: 186 FRYLHPE---DVEYSWWSYRFHAREKNAGWRIDYFLTSERVKEKIEQAVIH------QEI 236
Query: 205 YGSDHCPVSLELS 217
+GSDHCPV L++S
Sbjct: 237 FGSDHCPVELDIS 249
>gi|385218180|ref|YP_005779656.1| exodeoxyribonuclease [Helicobacter pylori F16]
gi|317178229|dbj|BAJ56018.1| exodeoxyribonuclease [Helicobacter pylori F16]
Length = 250
Score = 99.4 bits (246), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 63/191 (32%), Positives = 97/191 (50%), Gaps = 26/191 (13%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIW 85
++ +GRV+ EFE+FYL+N Y PN+ ++ + R W+ ++F+ KP+I
Sbjct: 84 EHNKEGRVVTCEFESFYLVNVYTPNS--QQALSRLSYRMSWEVEFKKFLKALELKKPVIV 141
Query: 86 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 145
CGDLNV+H EID+ +P K + GF+ ER++F +L G ID
Sbjct: 142 CGDLNVAHNEIDLENP---------------KTNRKNAGFSDEEREKFNELLNAG-FIDT 185
Query: 146 YRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 205
+R+ + K+ + WS + + RIDYF+ S LK R+ + +
Sbjct: 186 FRYFYPNKEKAYTW-WSYMQQARDKNIGWRIDYFLCSNPLKTRL------KDALIYKDIL 238
Query: 206 GSDHCPVSLEL 216
GSDHCPV LEL
Sbjct: 239 GSDHCPVGLEL 249
>gi|146286032|sp|A1YES6.1|APEX1_GORGO RecName: Full=DNA-(apurinic or apyrimidinic site) lyase; AltName:
Full=APEX nuclease; Short=APEN; AltName:
Full=Apurinic-apyrimidinic endonuclease 1; Short=AP
endonuclease 1; AltName: Full=REF-1; AltName: Full=Redox
factor-1; Contains: RecName: Full=DNA-(apurinic or
apyrimidinic site) lyase, mitochondrial
gi|120974134|gb|ABM46644.1| APEX1 [Gorilla gorilla]
Length = 318
Score = 99.4 bits (246), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 63/192 (32%), Positives = 104/192 (54%), Gaps = 25/192 (13%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQ-CSGKPLIW 85
+++ +GRVI+AEF++F L+ Y PN G + R++WD+ + F+ S KPL+
Sbjct: 150 EHDQEGRVIVAEFDSFVLVTAYVPNAG--RGLVRLEYRQRWDEAFRRFLKGLASRKPLVL 207
Query: 86 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 145
CGDLNV+HEEID+ +P+ NK++ GFT ER+ FG +L+ L D+
Sbjct: 208 CGDLNVAHEEIDLRNPKG------------NKKN---AGFTPQERQGFGELLQAVPLADS 252
Query: 146 YRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 205
+R L+ F W+ + + R+DYF++S L + +++ +
Sbjct: 253 FRHLYPNTPYAYTF-WTYMMNARSKNVGWRLDYFLLSHSLLPALCDSKIRSKAL------ 305
Query: 206 GSDHCPVSLELS 217
GSDHCP++L L+
Sbjct: 306 GSDHCPITLYLA 317
>gi|384898191|ref|YP_005773619.1| exodeoxyribonuclease III [Helicobacter pylori Lithuania75]
gi|317013296|gb|ADU83904.1| exodeoxyribonuclease III [Helicobacter pylori Lithuania75]
Length = 250
Score = 99.4 bits (246), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 63/191 (32%), Positives = 98/191 (51%), Gaps = 26/191 (13%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIW 85
+++ +GRV+ EFE+FYL+N Y PN+ ++ + R W+ ++F+ KP+I
Sbjct: 84 EHDKEGRVVTCEFESFYLVNVYTPNS--QQALSRLSYRISWEVEFKKFLKALELKKPVIV 141
Query: 86 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 145
CGDLNV+H EID+ +P K + GF+ ER++F +L G ID
Sbjct: 142 CGDLNVAHNEIDLENP---------------KTNRKNAGFSDEEREKFSELLNAG-FIDT 185
Query: 146 YRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 205
+R+ + K+ + WS + + RIDYF+ S LK R+ + +
Sbjct: 186 FRYFYPNKEKAYTW-WSYMQQARDKNIGWRIDYFLCSNPLKTRL------KDALIYKDIL 238
Query: 206 GSDHCPVSLEL 216
GSDHCPV LEL
Sbjct: 239 GSDHCPVGLEL 249
>gi|301788284|ref|XP_002929556.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase-like isoform 1
[Ailuropoda melanoleuca]
gi|301788286|ref|XP_002929557.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase-like isoform 2
[Ailuropoda melanoleuca]
gi|301788288|ref|XP_002929558.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase-like isoform 3
[Ailuropoda melanoleuca]
gi|281345899|gb|EFB21483.1| hypothetical protein PANDA_019762 [Ailuropoda melanoleuca]
Length = 318
Score = 99.4 bits (246), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 63/192 (32%), Positives = 104/192 (54%), Gaps = 25/192 (13%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQ-CSGKPLIW 85
+++ +GRVI+AEF+ F L+ Y PN G + R++WD+ ++F+ S KPL+
Sbjct: 150 EHDQEGRVIVAEFDAFVLVTAYVPNAG--RGLVRLEYRQRWDEAFRKFLKGLASRKPLVL 207
Query: 86 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 145
CGDLNV+HEEID+ +P+ NK++ GFT ER+ FG +L+ L D+
Sbjct: 208 CGDLNVAHEEIDLRNPKG------------NKKN---AGFTPQERQGFGELLQAVPLADS 252
Query: 146 YRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 205
+R L+ F W+ + + R+DYF++S L + +++ +
Sbjct: 253 FRHLYPNTAYAYTF-WTYMMNARSKNVGWRLDYFLLSHSLLPALCDSKIRSKAL------ 305
Query: 206 GSDHCPVSLELS 217
GSDHCP++L L+
Sbjct: 306 GSDHCPITLYLA 317
>gi|366053865|ref|ZP_09451587.1| exodeoxyribonuclease III [Lactobacillus suebicus KCTC 3549]
Length = 256
Score = 99.4 bits (246), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 63/189 (33%), Positives = 95/189 (50%), Gaps = 26/189 (13%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGKP-LIW 85
+++ +GRVI E+ +FYL+ Y PN+G + + F R+ W+K +++ Q S K +I+
Sbjct: 85 EFDHEGRVITLEYPSFYLITCYTPNSGQQLKRLDF--RQNWNKAFLDYINQLSAKKDVIF 142
Query: 86 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 145
CGDLNV+HE ID+ +P A GFT ER F +L E +D
Sbjct: 143 CGDLNVAHETIDLKNPSSNHHA---------------AGFTDEERNDFTHLL-ESNFVDT 186
Query: 146 YRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 205
YR + E + WS + R RIDYF+ S L D+++ ++ +
Sbjct: 187 YRHFYPEVTEQYSW-WSYRFHSRDRNAGWRIDYFVTSTGLTDQLVDAKIHSE------IF 239
Query: 206 GSDHCPVSL 214
GSDHCPV L
Sbjct: 240 GSDHCPVEL 248
>gi|308185296|ref|YP_003929429.1| exodeoxyribonuclease III [Helicobacter pylori SJM180]
gi|420454456|ref|ZP_14953289.1| exodeoxyribonuclease III [Helicobacter pylori Hp A-8]
gi|308061216|gb|ADO03112.1| exodeoxyribonuclease III [Helicobacter pylori SJM180]
gi|393067777|gb|EJB68584.1| exodeoxyribonuclease III [Helicobacter pylori Hp A-8]
Length = 250
Score = 99.4 bits (246), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 63/191 (32%), Positives = 98/191 (51%), Gaps = 26/191 (13%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIW 85
+++ +GRV+ EFE+FYL+N Y PN+ ++ + R W+ ++F+ KP+I
Sbjct: 84 EHDKEGRVVTCEFESFYLVNVYTPNS--QQALSRLSYRMSWEVEFKKFLKALELKKPVIV 141
Query: 86 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 145
CGDLNV+H EID+ +P K + GF+ ER++F +L G ID
Sbjct: 142 CGDLNVAHNEIDLENP---------------KTNRKNAGFSDEEREKFSELLNAG-FIDT 185
Query: 146 YRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 205
+R+ + K+ + WS + + RIDYF+ S LK R+ + +
Sbjct: 186 FRYFYPNKEKAYTW-WSYMQQARDKDIGWRIDYFLCSNPLKTRL------KDALIYKDIL 238
Query: 206 GSDHCPVSLEL 216
GSDHCPV LEL
Sbjct: 239 GSDHCPVGLEL 249
>gi|283796572|ref|ZP_06345725.1| exodeoxyribonuclease III [Clostridium sp. M62/1]
gi|291075985|gb|EFE13349.1| exodeoxyribonuclease III [Clostridium sp. M62/1]
gi|295092540|emb|CBK78647.1| exodeoxyribonuclease III [Clostridium cf. saccharolyticum K10]
gi|295115277|emb|CBL36124.1| exodeoxyribonuclease III [butyrate-producing bacterium SM4/1]
Length = 251
Score = 99.4 bits (246), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 67/189 (35%), Positives = 99/189 (52%), Gaps = 28/189 (14%)
Query: 28 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 86
++ +GRVI AE+E +Y+L Y PN+ + E R +W+ ++ + KP+I+C
Sbjct: 86 HDHEGRVITAEYEDYYVLTCYTPNS--QNELARLPYRMEWEDAFLAYLKKLEEKKPVIFC 143
Query: 87 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 146
GDLNV+H EID+ +P N+++ GFT ER +F A+L G ID Y
Sbjct: 144 GDLNVAHREIDLKNPR------------TNRKN---AGFTDEERGKFSALLDAG-FIDTY 187
Query: 147 RFLHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 205
R H D + +S WS + + RIDYF VSE L+DR+++ +
Sbjct: 188 R--HFYPDTEGVYSWWSYRFKAREKNAGWRIDYFCVSESLEDRLVSASIHTE------IM 239
Query: 206 GSDHCPVSL 214
GSDHCPV L
Sbjct: 240 GSDHCPVEL 248
>gi|15612480|ref|NP_224133.1| exodeoxyribonuclease III [Helicobacter pylori J99]
gi|420464550|ref|ZP_14963321.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-4]
gi|4156036|gb|AAD06994.1| EXODEOXYRIBONUCLEASE [Helicobacter pylori J99]
gi|393077779|gb|EJB78526.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-4]
Length = 250
Score = 99.4 bits (246), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 63/191 (32%), Positives = 98/191 (51%), Gaps = 26/191 (13%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIW 85
+++ +GRV+ EFE+FYL+N Y PN+ ++ + R W+ ++F+ KP+I
Sbjct: 84 EHDKEGRVVTCEFESFYLVNVYTPNS--QQALSRLSYRMSWEVEFKKFLKALELKKPVIV 141
Query: 86 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 145
CGDLNV+H EID+ +P K + GF+ ER++F +L G ID
Sbjct: 142 CGDLNVAHNEIDLENP---------------KTNRKNAGFSDEEREKFSELLNAG-FIDT 185
Query: 146 YRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 205
+R+ + K+ + WS + + RIDYF+ S LK R+ + +
Sbjct: 186 FRYFYPNKEKAYTW-WSYMQQARDKDIGWRIDYFLCSNPLKTRL------KDALIYKDIL 238
Query: 206 GSDHCPVSLEL 216
GSDHCPV LEL
Sbjct: 239 GSDHCPVGLEL 249
>gi|328870805|gb|EGG19178.1| transcription factor IIIC-gamma subunit [Dictyostelium
fasciculatum]
Length = 1238
Score = 99.4 bits (246), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 64/192 (33%), Positives = 95/192 (49%), Gaps = 27/192 (14%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQ---RRRKWDKRIQEFVLQC-SGKP 82
K++ +GRV+ AEFE FY++N Y PN+G +E + R ++WD +++ + KP
Sbjct: 201 KHDQEGRVVTAEFEDFYVVNAYVPNSGVDRKEPLKRLGYRTKEWDVDFFKYMSDLNTKKP 260
Query: 83 LIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRL 142
++WCGDLNV+H EID+++P K + GFTI ER F L G
Sbjct: 261 VVWCGDLNVAHTEIDLANP---------------KSNSRTAGFTIEERTSFSGHLNSG-F 304
Query: 143 IDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELE 202
ID +R + K F WS + + R+DYFIV I A ++
Sbjct: 305 IDTHRHFNPGKTGTYTF-WSYMGGARAKNAGWRLDYFIVPATFIGSIAASFIRSK----- 358
Query: 203 GFYGSDHCPVSL 214
GSDHCP+ +
Sbjct: 359 -VQGSDHCPIGI 369
>gi|223278400|ref|NP_788782.2| DNA-(apurinic or apyrimidinic site) lyase [Bos taurus]
gi|113912167|gb|AAI22611.1| APEX nuclease (multifunctional DNA repair enzyme) 1 [Bos taurus]
gi|296483354|tpg|DAA25469.1| TPA: DNA-(apurinic or apyrimidinic site) lyase [Bos taurus]
gi|440900925|gb|ELR51950.1| DNA-(apurinic or apyrimidinic site) lyase [Bos grunniens mutus]
Length = 318
Score = 99.4 bits (246), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 62/192 (32%), Positives = 105/192 (54%), Gaps = 25/192 (13%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQ-CSGKPLIW 85
+++ +GRVI+AE++ F L+ Y PN G + R++WD+ ++F+ S KPL+
Sbjct: 150 EHDQEGRVIVAEYDAFVLVTAYVPNAG--RGLVRLEYRQRWDEAFRKFLKGLASRKPLVL 207
Query: 86 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 145
CGDLNV+HEEID+ +P+ NK++ GFT ER+ FG +L+ L D+
Sbjct: 208 CGDLNVAHEEIDLRNPKG------------NKKN---AGFTPQERQGFGELLQAVPLTDS 252
Query: 146 YRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 205
+R L+ F W+ + + R+DYF++S+ L + +++ +
Sbjct: 253 FRHLYPNTAYAYTF-WTYMMNARSKNVGWRLDYFLLSQSLLPALCDSKIRSKAL------ 305
Query: 206 GSDHCPVSLELS 217
GSDHCP++L L+
Sbjct: 306 GSDHCPITLYLA 317
>gi|299037|gb|AAB26054.1| APEX nuclease=major apurinic/apyrimidinic endonuclease [human,
Peptide, 317 aa]
Length = 317
Score = 99.4 bits (246), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 63/192 (32%), Positives = 105/192 (54%), Gaps = 25/192 (13%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQ-CSGKPLIW 85
+++ +GRVI+AEF++F L+ Y PN G + R++WD+ ++F+ S KPL+
Sbjct: 149 EHDQEGRVIVAEFDSFVLVTAYVPNAG--RGLVRLEYRQRWDEAFRKFLKGLASRKPLVL 206
Query: 86 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 145
CGDLNV+HEEID+ +P+ NK++ GFT ER+ FG +L+ L D+
Sbjct: 207 CGDLNVAHEEIDLRNPKG------------NKKN---AGFTPQERQGFGELLQAVPLADS 251
Query: 146 YRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 205
+R L+ F W+ + + R+DYF++S L + +++ +
Sbjct: 252 FRHLYPNTPYAYTF-WTYMMNARSKNVGWRLDYFLLSHSLLPALCDSKIRSKAL------ 304
Query: 206 GSDHCPVSLELS 217
GSDHCP++L L+
Sbjct: 305 GSDHCPITLYLA 316
>gi|420504982|ref|ZP_15003506.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-62]
gi|393154128|gb|EJC54413.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-62]
Length = 250
Score = 99.4 bits (246), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 63/191 (32%), Positives = 98/191 (51%), Gaps = 26/191 (13%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIW 85
+++ +GRV+ EFE+FYL+N Y PN+ ++ + R W+ ++F+ KP+I
Sbjct: 84 EHDKEGRVVTCEFESFYLVNVYTPNS--QQALSRLNYRMSWEVEFKKFLKALELKKPVIV 141
Query: 86 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 145
CGDLNV+H EID+ +P K + GF+ ER++F +L G ID
Sbjct: 142 CGDLNVAHNEIDLENP---------------KTNRKNAGFSDEEREKFNELLNAG-FIDT 185
Query: 146 YRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 205
+R+ + K+ + WS + + RIDYF+ S LK R+ + +
Sbjct: 186 FRYFYPNKEKAYTW-WSYMQQARDKDIGWRIDYFLCSNPLKTRL------KDALIYKDIL 238
Query: 206 GSDHCPVSLEL 216
GSDHCPV LEL
Sbjct: 239 GSDHCPVGLEL 249
>gi|259047804|ref|ZP_05738205.1| exodeoxyribonuclease III [Granulicatella adiacens ATCC 49175]
gi|259035481|gb|EEW36736.1| exodeoxyribonuclease III [Granulicatella adiacens ATCC 49175]
Length = 254
Score = 99.4 bits (246), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 62/193 (32%), Positives = 105/193 (54%), Gaps = 30/193 (15%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIW 85
+++ +GRVI AE+E FYL+ Y PN K + + + R+ W+ F+ + KP+I+
Sbjct: 87 EHDQEGRVITAEYEKFYLVTVYTPNA--KRDLSRLEYRQVWEDDFLAFIKKLEETKPVIF 144
Query: 86 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 145
CGDLNV+H+EID+++P K + GFT ER +F ++ L+DA
Sbjct: 145 CGDLNVAHKEIDLANP---------------KTNTMNAGFTKEERAKFDQVVN-NDLVDA 188
Query: 146 YRFLHKEKDMDCGFSWSGNPIGKYRGKRM--RIDYFIVSEELKDRIIACEMQGHGIELEG 203
+R+L+ D +SW + +G R + + RIDYF++S+ L + +++
Sbjct: 189 FRYLY--PDTLGAYSW-WSYMGGARARNVGWRIDYFVISQPLTAFLQEVKIRSD------ 239
Query: 204 FYGSDHCPVSLEL 216
GSDHCPV +++
Sbjct: 240 VTGSDHCPVEMKI 252
>gi|425790062|ref|YP_007017982.1| exodeoxyribonuclease III [Helicobacter pylori Aklavik117]
gi|425628377|gb|AFX91845.1| exodeoxyribonuclease III [Helicobacter pylori Aklavik117]
Length = 250
Score = 99.4 bits (246), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 63/195 (32%), Positives = 100/195 (51%), Gaps = 26/195 (13%)
Query: 23 LSALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GK 81
++ +++ +GRV+ EFE+FYL+N Y PN+ ++ + R W+ ++F+ K
Sbjct: 80 INVEEHDKEGRVVTCEFESFYLVNVYVPNS--QQALSRLSYRMSWEVEFKKFLKALELKK 137
Query: 82 PLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGR 141
P+I CGDLNV+H EID+ +P K + GF+ ER++F +L G
Sbjct: 138 PVIVCGDLNVAHNEIDLENP---------------KTNRKNAGFSDEEREKFNELLNAG- 181
Query: 142 LIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIEL 201
ID +R+ + K+ + WS + + RIDYF+ S LK R+ +
Sbjct: 182 FIDTFRYFYPNKEKAYTW-WSYMQQARDKDIGWRIDYFLCSNPLKTRL------KDALIY 234
Query: 202 EGFYGSDHCPVSLEL 216
+ GSDHCPV LEL
Sbjct: 235 KDILGSDHCPVGLEL 249
>gi|468371|gb|AAA21019.1| apurinic/apyrimidinic endonuclease [Rattus norvegicus]
Length = 316
Score = 99.4 bits (246), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 63/192 (32%), Positives = 105/192 (54%), Gaps = 25/192 (13%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQ-CSGKPLIW 85
+++ +GRVI+AEFE+F L+ Y PN G + R++WD+ ++F+ S KPL+
Sbjct: 148 EHDQEGRVIVAEFESFILVTAYVPNAG--RGLVRLEYRQRWDEAFRKFLKDLASRKPLVL 205
Query: 86 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 145
CGDLNV+HEEID+ +P+ NK++ GFT E + FG +L+ L D+
Sbjct: 206 CGDLNVAHEEIDLRNPKG------------NKKN---AGFTPQEAQGFGEMLQAVPLADS 250
Query: 146 YRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 205
+R L+ F W+ + + R+DYF++S+ L + +++ +
Sbjct: 251 FRHLYPNTAYAYTF-WTYMMNARSKNVGWRLDYFLLSQSLLPALCDSKIRSKAL------ 303
Query: 206 GSDHCPVSLELS 217
GSDHCP++L L+
Sbjct: 304 GSDHCPITLYLA 315
>gi|420432830|ref|ZP_14931843.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-16]
gi|393046920|gb|EJB47899.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-16]
Length = 236
Score = 99.4 bits (246), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 63/191 (32%), Positives = 98/191 (51%), Gaps = 26/191 (13%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIW 85
+++ +GRV+ EFE+FYL+N Y PN+ ++ + R W+ ++F+ KP+I
Sbjct: 70 EHDKEGRVVTCEFESFYLVNVYTPNS--QQALSRLSYRMSWEVEFKKFLKALELKKPVIV 127
Query: 86 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 145
CGDLNV+H EID+ +P K + GF+ ER++F +L G ID
Sbjct: 128 CGDLNVAHNEIDLENP---------------KTNRKNAGFSDEEREKFSELLNAG-FIDT 171
Query: 146 YRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 205
+R+ + K+ + WS + + RIDYF+ S LK R+ + +
Sbjct: 172 FRYFYPNKEKAYTW-WSYMQQARDKDIGWRIDYFLCSNPLKTRL------KDALIYKDIL 224
Query: 206 GSDHCPVSLEL 216
GSDHCPV LEL
Sbjct: 225 GSDHCPVGLEL 235
>gi|410622567|ref|ZP_11333400.1| exodeoxyribonuclease III [Glaciecola pallidula DSM 14239 = ACAM
615]
gi|410157921|dbj|GAC28774.1| exodeoxyribonuclease III [Glaciecola pallidula DSM 14239 = ACAM
615]
Length = 255
Score = 99.4 bits (246), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 63/193 (32%), Positives = 101/193 (52%), Gaps = 28/193 (14%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIW 85
+++ +GRV+ AEF+ FYL+ Y PN+G + S+ R +WD +V Q KP++
Sbjct: 87 EHDQEGRVLCAEFDAFYLVTVYTPNSGDSLKRLSY--RTQWDADFLSYVKQLEALKPVVV 144
Query: 86 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 145
CGDLNV+H +ID++ P+ PN G+T E +++ G +D
Sbjct: 145 CGDLNVAHRDIDIARPK------------PNYNK--SAGYTQKEIDGIDSLIAAG-YVDT 189
Query: 146 YRFLHKEKDMDCGFSWSGNPIG-KYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGF 204
+R L + +SW G + R R+DYF+VS +LK++I ++
Sbjct: 190 FRHLFPDT---VKYSWWSYRAGARERNVGWRLDYFLVSHKLKEQISGADIHN------DI 240
Query: 205 YGSDHCPVSLELS 217
+GSDHCPVS++LS
Sbjct: 241 HGSDHCPVSVQLS 253
>gi|420425904|ref|ZP_14924964.1| exodeoxyribonuclease III [Helicobacter pylori Hp A-5]
gi|393040802|gb|EJB41820.1| exodeoxyribonuclease III [Helicobacter pylori Hp A-5]
Length = 250
Score = 99.4 bits (246), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 63/191 (32%), Positives = 98/191 (51%), Gaps = 26/191 (13%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIW 85
+++ +GR+I EFE+FYL+N Y PN+ ++ + R W+ ++F+ KP+I
Sbjct: 84 EHDKEGRIITCEFESFYLVNVYTPNS--QQALSRLSYRMSWEVEFKKFLKALELKKPVIV 141
Query: 86 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 145
CGDLNV+H EID+ +P K + GF+ ER++F +L G ID
Sbjct: 142 CGDLNVAHNEIDLENP---------------KTNRKNAGFSDEEREKFSELLNAG-FIDT 185
Query: 146 YRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 205
+R+ + K+ + WS + + RIDYF+ S LK R+ + +
Sbjct: 186 FRYFYPNKEKAYTW-WSYMQQARDKDIGWRIDYFLCSNPLKTRL------KDALIYKDIL 238
Query: 206 GSDHCPVSLEL 216
GSDHCPV LEL
Sbjct: 239 GSDHCPVGLEL 249
>gi|410961724|ref|XP_003987429.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase isoform 2
[Felis catus]
Length = 404
Score = 99.4 bits (246), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 63/192 (32%), Positives = 105/192 (54%), Gaps = 25/192 (13%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQ-CSGKPLIW 85
+++ +GRVI+AEF++F L+ Y PN G + R++WD+ ++F+ S KPL+
Sbjct: 236 EHDQEGRVIVAEFDSFVLVTAYVPNAG--RGLVRLEYRQRWDEAFRKFLKGLASRKPLVL 293
Query: 86 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 145
CGDLNV+HEEID+ +P+ NK++ GFT ER+ FG +L+ L D+
Sbjct: 294 CGDLNVAHEEIDLRNPKG------------NKKN---AGFTPQERQGFGELLEAVPLADS 338
Query: 146 YRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 205
+R L+ F W+ + + R+DYF++S L + +++ +
Sbjct: 339 FRHLYPNTAYAYTF-WTYMMNARSKNVGWRLDYFLLSHSLLPALCDSKIRSKAL------ 391
Query: 206 GSDHCPVSLELS 217
GSDHCP++L L+
Sbjct: 392 GSDHCPITLYLA 403
>gi|410725723|ref|ZP_11364086.1| exodeoxyribonuclease III [Clostridium sp. Maddingley MBC34-26]
gi|410601734|gb|EKQ56234.1| exodeoxyribonuclease III [Clostridium sp. Maddingley MBC34-26]
Length = 252
Score = 99.4 bits (246), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 65/189 (34%), Positives = 101/189 (53%), Gaps = 26/189 (13%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIW 85
+++ +GRV+ EF FYL+N Y PN+ K+ R W+ ++++ + KP+I
Sbjct: 85 EHDNEGRVLTLEFNDFYLVNVYTPNS--KQGLERLDYRMVWEDVFRQYLKELEKKKPVIL 142
Query: 86 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 145
CGDLNV+H+EID+ +P K + GFT ER++ +L G ID
Sbjct: 143 CGDLNVAHKEIDLKNP---------------KVNRKNAGFTDEEREKITQLLDSG-FIDT 186
Query: 146 YRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 205
YRF + +K+ + WS + RIDYF+VSE LKD++ ++ +++E
Sbjct: 187 YRFFYPDKEGAYSW-WSYRFNARANNAGWRIDYFLVSESLKDKLEDAKIH---MDIE--- 239
Query: 206 GSDHCPVSL 214
GSDHCPV L
Sbjct: 240 GSDHCPVEL 248
>gi|420433080|ref|ZP_14932089.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-24]
gi|420508405|ref|ZP_15006911.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-24b]
gi|420510180|ref|ZP_15008676.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-24c]
gi|420532271|ref|ZP_15030634.1| exodeoxyribonuclease III [Helicobacter pylori Hp M1]
gi|420535643|ref|ZP_15033985.1| exodeoxyribonuclease III [Helicobacter pylori Hp M3]
gi|420537346|ref|ZP_15035676.1| exodeoxyribonuclease III [Helicobacter pylori Hp M4]
gi|420540833|ref|ZP_15039141.1| exodeoxyribonuclease III [Helicobacter pylori Hp M6]
gi|420543901|ref|ZP_15042190.1| exodeoxyribonuclease III [Helicobacter pylori Hp M9]
gi|393051948|gb|EJB52898.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-24]
gi|393115197|gb|EJC15708.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-24b]
gi|393116707|gb|EJC17212.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-24c]
gi|393139902|gb|EJC40275.1| exodeoxyribonuclease III [Helicobacter pylori Hp M1]
gi|393143291|gb|EJC43635.1| exodeoxyribonuclease III [Helicobacter pylori Hp M3]
gi|393144901|gb|EJC45232.1| exodeoxyribonuclease III [Helicobacter pylori Hp M4]
gi|393147453|gb|EJC47777.1| exodeoxyribonuclease III [Helicobacter pylori Hp M6]
gi|393158898|gb|EJC59154.1| exodeoxyribonuclease III [Helicobacter pylori Hp M9]
Length = 250
Score = 99.4 bits (246), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 63/191 (32%), Positives = 98/191 (51%), Gaps = 26/191 (13%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIW 85
+++ +GRV+ EFE+FYL+N Y PN+ ++ + R W+ ++F+ KP+I
Sbjct: 84 EHDKEGRVVTCEFESFYLVNVYTPNS--QQALSRLSYRMSWEVEFRKFLKALELKKPVIV 141
Query: 86 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 145
CGDLNV+H EID+ +P K + GF+ ER++F +L G ID
Sbjct: 142 CGDLNVAHNEIDLENP---------------KTNRKNAGFSDEEREKFNELLNAG-FIDT 185
Query: 146 YRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 205
+R+ + K+ + WS + + RIDYF+ S LK R+ + +
Sbjct: 186 FRYFYPNKEKAYTW-WSYMQQARDKDIGWRIDYFLCSNPLKTRL------KDALIYKDIL 238
Query: 206 GSDHCPVSLEL 216
GSDHCPV LEL
Sbjct: 239 GSDHCPVGLEL 249
>gi|420427852|ref|ZP_14926893.1| exodeoxyribonuclease III [Helicobacter pylori Hp A-9]
gi|393040038|gb|EJB41059.1| exodeoxyribonuclease III [Helicobacter pylori Hp A-9]
Length = 248
Score = 99.4 bits (246), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 63/191 (32%), Positives = 98/191 (51%), Gaps = 26/191 (13%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIW 85
+++ +GRV+ EFE+FYL+N Y PN+ ++ + R W+ ++F+ KP+I
Sbjct: 82 EHDKEGRVVTCEFESFYLVNVYTPNS--QQALSRLSYRMSWEVEFRKFLKALELKKPVIV 139
Query: 86 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 145
CGDLNV+H EID+ +P K + GF+ ER++F +L G ID
Sbjct: 140 CGDLNVAHNEIDLENP---------------KTNRKNAGFSDEEREKFSELLNAG-FIDT 183
Query: 146 YRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 205
+R+ + K+ + WS + + RIDYF+ S LK R+ + +
Sbjct: 184 FRYFYPNKEKAYTW-WSYMQQARDKDIGWRIDYFLCSNPLKTRL------KDALIYKDIL 236
Query: 206 GSDHCPVSLEL 216
GSDHCPV LEL
Sbjct: 237 GSDHCPVGLEL 247
>gi|330834656|ref|YP_004409384.1| exodeoxyribonuclease III Xth [Metallosphaera cuprina Ar-4]
gi|329566795|gb|AEB94900.1| exodeoxyribonuclease III Xth [Metallosphaera cuprina Ar-4]
Length = 256
Score = 99.4 bits (246), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 67/192 (34%), Positives = 102/192 (53%), Gaps = 27/192 (14%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGKPLIWC 86
+++ +GRVI EF++ +++N Y PN G + F+ R +++ QE+V GKP + C
Sbjct: 92 EFDVEGRVISTEFKSMFVINVYFPNAGEGLKRLDFKLR--FNRAFQEYVASL-GKPSVIC 148
Query: 87 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 146
GD NV+HEEID++ P K++ GFT ERK F L G +D +
Sbjct: 149 GDFNVAHEEIDIARP---------------KDNVNHAGFTPEERKWFHEFLLSG-FVDTF 192
Query: 147 RFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYG 206
R KE +S+ + K G RIDY +VS+EL+ ++ E+ LE G
Sbjct: 193 RLFVKEPGHYSWWSYRFHAREKNIG--WRIDYCVVSKELESKVKKAEI------LEKVMG 244
Query: 207 SDHCPVSLELSE 218
SDH PV++E+SE
Sbjct: 245 SDHAPVTVEISE 256
>gi|210634817|ref|ZP_03298323.1| hypothetical protein COLSTE_02250 [Collinsella stercoris DSM 13279]
gi|210158621|gb|EEA89592.1| exodeoxyribonuclease III [Collinsella stercoris DSM 13279]
Length = 280
Score = 99.4 bits (246), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 63/190 (33%), Positives = 94/190 (49%), Gaps = 30/190 (15%)
Query: 31 DGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC---SGKPLIWCG 87
+GRV EFE F+ ++ Y PN + E R WD + F+L +GKP++ CG
Sbjct: 115 EGRVCALEFERFWFVDVYTPNA--QGELARLDTRMAWDDAYRAFLLSLEDETGKPVVTCG 172
Query: 88 DLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYR 147
D NV+H EID+ +P K + G GF+ ER +F +L G D +R
Sbjct: 173 DFNVAHNEIDLKNP---------------KSNRGNAGFSDEERSKFVELLDAG-YTDTFR 216
Query: 148 FLHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYG 206
D++ +S WS + RIDYF+VS+ + DR+ A ++ +G
Sbjct: 217 --AANPDLEGAYSWWSYRFNARKNNAGWRIDYFLVSDSIADRVRATGIRSD------IFG 268
Query: 207 SDHCPVSLEL 216
SDHCPV+LE+
Sbjct: 269 SDHCPVTLEI 278
>gi|420535388|ref|ZP_15033733.1| exodeoxyribonuclease III [Helicobacter pylori Hp M2]
gi|420539073|ref|ZP_15037392.1| exodeoxyribonuclease III [Helicobacter pylori Hp M5]
gi|393139673|gb|EJC40047.1| exodeoxyribonuclease III [Helicobacter pylori Hp M2]
gi|393146758|gb|EJC47083.1| exodeoxyribonuclease III [Helicobacter pylori Hp M5]
Length = 236
Score = 99.4 bits (246), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 63/191 (32%), Positives = 98/191 (51%), Gaps = 26/191 (13%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIW 85
+++ +GRV+ EFE+FYL+N Y PN+ ++ + R W+ ++F+ KP+I
Sbjct: 70 EHDKEGRVVTCEFESFYLVNVYTPNS--QQALSRLSYRMSWEVEFRKFLKALELKKPVIV 127
Query: 86 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 145
CGDLNV+H EID+ +P K + GF+ ER++F +L G ID
Sbjct: 128 CGDLNVAHNEIDLENP---------------KTNRKNAGFSDEEREKFNELLNAG-FIDT 171
Query: 146 YRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 205
+R+ + K+ + WS + + RIDYF+ S LK R+ + +
Sbjct: 172 FRYFYPNKEKAYTW-WSYMQQARDKDIGWRIDYFLCSNPLKTRL------KDALIYKDIL 224
Query: 206 GSDHCPVSLEL 216
GSDHCPV LEL
Sbjct: 225 GSDHCPVGLEL 235
>gi|327278210|ref|XP_003223855.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase-like isoform 2
[Anolis carolinensis]
Length = 306
Score = 99.4 bits (246), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 62/192 (32%), Positives = 106/192 (55%), Gaps = 26/192 (13%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIW 85
+++ +GRVI AEF +++L+ +Y PN G + R+ WD + ++ + KPLI
Sbjct: 139 EHDKEGRVITAEFPSYFLVTSYVPNAG--RGLVRLEYRQSWDVAFRSYLKGLAARKPLIL 196
Query: 86 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 145
CGDLNV+HEEID+ +P+ NK++ GFT ER F +L+EG +D
Sbjct: 197 CGDLNVAHEEIDLKNPKG------------NKKN---AGFTPEERAGFTKLLEEG-FVDT 240
Query: 146 YRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 205
+R L+ + F W+ + + R+DYF+VS++L++ I +++ +
Sbjct: 241 FRHLYPDTAYAYTF-WTYMMNARSKNVGWRLDYFVVSKDLQESICDSKIRSTAL------ 293
Query: 206 GSDHCPVSLELS 217
GSDHCP++L ++
Sbjct: 294 GSDHCPITLYIA 305
>gi|426232864|ref|XP_004010439.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase [Ovis aries]
Length = 318
Score = 99.0 bits (245), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 62/192 (32%), Positives = 105/192 (54%), Gaps = 25/192 (13%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQ-CSGKPLIW 85
+++ +GRVI+AE++ F L+ Y PN G + R+ WD+ ++F+ S KPL+
Sbjct: 150 EHDQEGRVIVAEYDAFVLVTAYVPNAG--RGLVRLEYRQCWDEAFRKFLKGLASRKPLVL 207
Query: 86 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 145
CGDLNV+HEEID+ +P+ NK++ GFT ER+ FG +L+ L D+
Sbjct: 208 CGDLNVAHEEIDLRNPKG------------NKKN---AGFTPQERQGFGELLQAAPLTDS 252
Query: 146 YRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 205
+R L+ + F W+ + + R+DYF++S+ L + +++ +
Sbjct: 253 FRHLYPNRAYAYTF-WTYMMNARSKNVGWRLDYFLLSQSLLPALCDSKIRSKAL------ 305
Query: 206 GSDHCPVSLELS 217
GSDHCP++L L+
Sbjct: 306 GSDHCPITLYLA 317
>gi|420401021|ref|ZP_14900220.1| exodeoxyribonuclease III [Helicobacter pylori CPY3281]
gi|393016629|gb|EJB17788.1| exodeoxyribonuclease III [Helicobacter pylori CPY3281]
Length = 250
Score = 99.0 bits (245), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 63/191 (32%), Positives = 98/191 (51%), Gaps = 26/191 (13%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIW 85
+++ +GRV+ EFE+FYL+N Y PN+ ++ + R W+ ++F+ KP+I
Sbjct: 84 EHDKEGRVVTCEFESFYLVNVYVPNS--QQALSRLSYRMSWEVEFRKFLKALELKKPVIV 141
Query: 86 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 145
CGDLNV+H EID+ +P K + GF+ ER++F +L G ID
Sbjct: 142 CGDLNVAHNEIDLENP---------------KTNRKNAGFSDEEREKFNELLNAG-FIDT 185
Query: 146 YRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 205
+R+ + K+ + WS + + RIDYF+ S LK R+ + +
Sbjct: 186 FRYFYPNKEKAYTW-WSYMQQARDKDIGWRIDYFLCSHPLKTRL------KDALIYKDIL 238
Query: 206 GSDHCPVSLEL 216
GSDHCPV LEL
Sbjct: 239 GSDHCPVGLEL 249
>gi|444374829|ref|ZP_21174132.1| exodeoxyribonuclease III [Helicobacter pylori A45]
gi|443620688|gb|ELT81131.1| exodeoxyribonuclease III [Helicobacter pylori A45]
Length = 250
Score = 99.0 bits (245), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 64/191 (33%), Positives = 97/191 (50%), Gaps = 26/191 (13%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIW 85
+++ +GRVI EFE+FYL+N Y PN+ ++ + R W+ ++F+ KP+I
Sbjct: 84 EHDKEGRVITCEFESFYLVNVYTPNS--QQALSRLSYRMSWEVEFKKFLKALELKKPVIV 141
Query: 86 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 145
CGDLNV+H EID+ +P K + GF+ ER +F +L G ID
Sbjct: 142 CGDLNVAHNEIDLENP---------------KTNRKNAGFSDEERGKFSELLNAG-FIDT 185
Query: 146 YRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 205
+R+ + K+ + WS + + RIDYF+ S LK R+ + +
Sbjct: 186 FRYFYPNKEKAYTW-WSYMQQARDKDIGWRIDYFLCSNPLKTRL------KDALIYKDIL 238
Query: 206 GSDHCPVSLEL 216
GSDHCPV LEL
Sbjct: 239 GSDHCPVGLEL 249
>gi|420528800|ref|ZP_15027190.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-25c]
gi|420528961|ref|ZP_15027349.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-25d]
gi|393132399|gb|EJC32820.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-25c]
gi|393138075|gb|EJC38457.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-25d]
Length = 250
Score = 99.0 bits (245), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 64/191 (33%), Positives = 97/191 (50%), Gaps = 26/191 (13%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIW 85
+++ +GRVI EFE+FYL+N Y PN+ ++ + R W+ ++F+ KP+I
Sbjct: 84 EHDKEGRVITCEFESFYLVNVYTPNS--QQALSRLSYRMSWEVEFKKFLKALELKKPVIV 141
Query: 86 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 145
CGDLNV+H EID+ +P K + GF+ ER +F +L G ID
Sbjct: 142 CGDLNVAHNEIDLENP---------------KTNRKNAGFSDEERGKFSELLNAG-FIDT 185
Query: 146 YRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 205
+R+ + K+ + WS + + RIDYF+ S LK R+ + +
Sbjct: 186 FRYFYPNKEKAYTW-WSYMQQARDKDIGWRIDYFLCSNPLKTRL------KDALIYKDIL 238
Query: 206 GSDHCPVSLEL 216
GSDHCPV LEL
Sbjct: 239 GSDHCPVGLEL 249
>gi|327278208|ref|XP_003223854.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase-like isoform 1
[Anolis carolinensis]
Length = 314
Score = 99.0 bits (245), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 62/192 (32%), Positives = 106/192 (55%), Gaps = 26/192 (13%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIW 85
+++ +GRVI AEF +++L+ +Y PN G + R+ WD + ++ + KPLI
Sbjct: 147 EHDKEGRVITAEFPSYFLVTSYVPNAG--RGLVRLEYRQSWDVAFRSYLKGLAARKPLIL 204
Query: 86 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 145
CGDLNV+HEEID+ +P+ NK++ GFT ER F +L+EG +D
Sbjct: 205 CGDLNVAHEEIDLKNPKG------------NKKN---AGFTPEERAGFTKLLEEG-FVDT 248
Query: 146 YRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 205
+R L+ + F W+ + + R+DYF+VS++L++ I +++ +
Sbjct: 249 FRHLYPDTAYAYTF-WTYMMNARSKNVGWRLDYFVVSKDLQESICDSKIRSTAL------ 301
Query: 206 GSDHCPVSLELS 217
GSDHCP++L ++
Sbjct: 302 GSDHCPITLYIA 313
>gi|420496454|ref|ZP_14995017.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-23]
gi|393110512|gb|EJC11037.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-23]
Length = 250
Score = 99.0 bits (245), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 63/191 (32%), Positives = 97/191 (50%), Gaps = 26/191 (13%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIW 85
+++ +GRV+ EFE+FYL+N Y PN+ ++ + R W+ ++F+ KP+I
Sbjct: 84 EHDKEGRVVTCEFESFYLVNVYTPNS--QQALSRLSYRMSWEVEFKKFLKALELKKPVIV 141
Query: 86 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 145
CGDLNV+H EID+ +P K + GF+ ER +F +L G ID
Sbjct: 142 CGDLNVAHNEIDLENP---------------KTNRKNAGFSDEERGKFSELLNAG-FIDT 185
Query: 146 YRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 205
+R+ + K+ + WS + + RIDYF+ S LK R+ + +
Sbjct: 186 FRYFYPNKEKAYTW-WSYMQQARDKNIGWRIDYFLCSNPLKTRL------KDALIYKDIL 238
Query: 206 GSDHCPVSLEL 216
GSDHCPV LEL
Sbjct: 239 GSDHCPVGLEL 249
>gi|345884610|ref|ZP_08836014.1| exodeoxyribonuclease [Prevotella sp. C561]
gi|345042603|gb|EGW46699.1| exodeoxyribonuclease [Prevotella sp. C561]
Length = 249
Score = 99.0 bits (245), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 63/192 (32%), Positives = 99/192 (51%), Gaps = 29/192 (15%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIW 85
+++ +GRVI E + FYL+ Y PN+ ++ R KW++ Q ++ + KP+I
Sbjct: 84 EHDHEGRVITLEMDDFYLITVYTPNS--QDGLRRLDYRMKWEEDFQAYLHRLDAIKPVIV 141
Query: 86 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 145
CGD+NV+H+EID+ +P K + GFT ER++ +L G ID
Sbjct: 142 CGDMNVAHQEIDLKNP---------------KTNHKNAGFTDEEREKMTQLLSNG-FIDT 185
Query: 146 YRFLHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGF 204
+R L+ EK +S WS + + RIDYF++SE LKDR+ ++
Sbjct: 186 FRTLYPEK---VTYSWWSYRFRAREKNTGWRIDYFLISERLKDRLEDAKIHTE------I 236
Query: 205 YGSDHCPVSLEL 216
GSDHCP+ + L
Sbjct: 237 MGSDHCPIEITL 248
>gi|335356439|ref|ZP_08548309.1| exodeoxyribonuclease [Lactobacillus animalis KCTC 3501]
Length = 253
Score = 99.0 bits (245), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 66/197 (33%), Positives = 102/197 (51%), Gaps = 26/197 (13%)
Query: 23 LSALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQ-CSGK 81
L +++ +GRV+ E+E FYL+N Y PN+ K + F R +W+ + + + K
Sbjct: 80 LGLAEFDQEGRVLTLEYEDFYLVNCYTPNSQDKLKRLDF--RLQWEAAFSDHLTNLATKK 137
Query: 82 PLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGR 141
P+I CGDLNV+H EID+ +P+ PN+++ GF+I ER+ A+L G
Sbjct: 138 PVILCGDLNVAHNEIDLKNPK------------PNQKN---AGFSIQERQAMTALLARG- 181
Query: 142 LIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIEL 201
D +R ++ +K + WS + R RIDYFI S L ++ ++ L
Sbjct: 182 FTDTFRHIYLDKTGAYSW-WSYRFNARARNAGWRIDYFICSNALLPQVKDSQI------L 234
Query: 202 EGFYGSDHCPVSLELSE 218
GSDHCPV LE +E
Sbjct: 235 PEILGSDHCPVMLETNE 251
>gi|367462704|gb|ADJ96599.2| DNA repair enzyme APEX-1 [Camelus dromedarius]
Length = 318
Score = 99.0 bits (245), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 63/192 (32%), Positives = 104/192 (54%), Gaps = 25/192 (13%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQ-CSGKPLIW 85
+++ +GRVI+AEF+ F L+ Y PN G + R++WD+ ++F+ S KPL+
Sbjct: 150 EHDQEGRVIVAEFDAFVLVTVYVPNAG--RGLVRLEYRQRWDEAFRKFLKGLASRKPLVL 207
Query: 86 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 145
CGDLNV+HEEID+ +P+ NK++ GFT ER+ FG +L+ L D+
Sbjct: 208 CGDLNVAHEEIDLRNPKG------------NKKN---AGFTPQERQGFGELLQAVPLADS 252
Query: 146 YRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 205
+R L+ F W+ + + R+DYF++S L + +++ +
Sbjct: 253 FRHLYPNTAYAYTF-WTYMMNARSKNVGWRLDYFLLSHSLLPALCDSKIRSKAL------ 305
Query: 206 GSDHCPVSLELS 217
GSDHCP++L L+
Sbjct: 306 GSDHCPITLYLA 317
>gi|348577629|ref|XP_003474586.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase-like [Cavia
porcellus]
Length = 318
Score = 99.0 bits (245), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 63/191 (32%), Positives = 104/191 (54%), Gaps = 25/191 (13%)
Query: 28 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQ-CSGKPLIWC 86
++ +GRVI+AEF++F L+ Y PN G + R++WD+ ++F+ S KPL+ C
Sbjct: 151 HDQEGRVIVAEFDSFVLVTAYVPNAG--RGLVRLEYRQRWDEAFRKFLKGLASRKPLVLC 208
Query: 87 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 146
GDLNV+HEEID+ +P+ NK++ GFT ER+ FG +L+ L D++
Sbjct: 209 GDLNVAHEEIDLRNPKG------------NKKN---AGFTPQERQGFGELLQAVPLADSF 253
Query: 147 RFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYG 206
R L+ F W+ + + R+DYF++S L + +++ + G
Sbjct: 254 RHLYPNAAYAYTF-WTYMMNARSKNVGWRLDYFLLSHSLLPALCDSKIRSKAL------G 306
Query: 207 SDHCPVSLELS 217
SDHCP++L L+
Sbjct: 307 SDHCPITLYLA 317
>gi|329895423|ref|ZP_08271004.1| Exodeoxyribonuclease III [gamma proteobacterium IMCC3088]
gi|328922306|gb|EGG29652.1| Exodeoxyribonuclease III [gamma proteobacterium IMCC3088]
Length = 256
Score = 99.0 bits (245), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 64/195 (32%), Positives = 100/195 (51%), Gaps = 32/195 (16%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIW 85
+++ +GRV+ AEFETFYL+ Y PN+G E R+ WDK +++ KP++
Sbjct: 88 EHDTEGRVLCAEFETFYLVTVYTPNSG--SELKRLDYRQSWDKDFADYLKTLEQTKPVVV 145
Query: 86 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQ-PGFTIAERKRFGAILKEGRLID 144
CGDLNV+H++ID++ P K+++ + G+ AE F ++ G +D
Sbjct: 146 CGDLNVAHQDIDLARP---------------KQNYNKSAGYMQAEIDGFDRLVDLG-FVD 189
Query: 145 AYRFLHKEKDMDCGFSWSGNPIGKYRGKRM--RIDYFIVSEELKDRIIACEMQGHGIELE 202
YR + +SW G R K + RIDYF+V+ EL + E+
Sbjct: 190 TYRHFNPNT---AKYSWWSYRAGA-REKNIGWRIDYFLVTPELTSSLTGAEI------YN 239
Query: 203 GFYGSDHCPVSLELS 217
YGSDHCPV +++S
Sbjct: 240 DVYGSDHCPVGIDIS 254
>gi|385221296|ref|YP_005782768.1| exodeoxyribonuclease III [Helicobacter pylori India7]
gi|317010103|gb|ADU80683.1| exodeoxyribonuclease III [Helicobacter pylori India7]
Length = 250
Score = 99.0 bits (245), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 63/191 (32%), Positives = 97/191 (50%), Gaps = 26/191 (13%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIW 85
+++ +GRV+ EFE+FYL+N Y PN+ ++ + R W+ ++F+ KP+I
Sbjct: 84 EHDKEGRVVTCEFESFYLVNVYTPNS--QQALSRLNYRMSWEVEFKKFLKALELKKPVIV 141
Query: 86 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 145
CGDLNV+H EID+ +P K + GF+ ER +F +L G ID
Sbjct: 142 CGDLNVAHNEIDLENP---------------KTNRKNAGFSDEERGKFSELLNAG-FIDT 185
Query: 146 YRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 205
+R+ + K+ + WS + + RIDYF+ S LK R+ + +
Sbjct: 186 FRYFYPNKEKAYTW-WSYMQQARDKNIGWRIDYFLCSNPLKTRL------KDALIYKDIL 238
Query: 206 GSDHCPVSLEL 216
GSDHCPV LEL
Sbjct: 239 GSDHCPVGLEL 249
>gi|410961722|ref|XP_003987428.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase isoform 1
[Felis catus]
gi|410961726|ref|XP_003987430.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase isoform 3
[Felis catus]
gi|410961728|ref|XP_003987431.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase isoform 4
[Felis catus]
gi|410961730|ref|XP_003987432.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase isoform 5
[Felis catus]
Length = 318
Score = 99.0 bits (245), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 63/192 (32%), Positives = 105/192 (54%), Gaps = 25/192 (13%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQ-CSGKPLIW 85
+++ +GRVI+AEF++F L+ Y PN G + R++WD+ ++F+ S KPL+
Sbjct: 150 EHDQEGRVIVAEFDSFVLVTAYVPNAG--RGLVRLEYRQRWDEAFRKFLKGLASRKPLVL 207
Query: 86 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 145
CGDLNV+HEEID+ +P+ NK++ GFT ER+ FG +L+ L D+
Sbjct: 208 CGDLNVAHEEIDLRNPKG------------NKKN---AGFTPQERQGFGELLEAVPLADS 252
Query: 146 YRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 205
+R L+ F W+ + + R+DYF++S L + +++ +
Sbjct: 253 FRHLYPNTAYAYTF-WTYMMNARSKNVGWRLDYFLLSHSLLPALCDSKIRSKAL------ 305
Query: 206 GSDHCPVSLELS 217
GSDHCP++L L+
Sbjct: 306 GSDHCPITLYLA 317
>gi|402836561|ref|ZP_10885097.1| exodeoxyribonuclease III [Mogibacterium sp. CM50]
gi|402271037|gb|EJU20293.1| exodeoxyribonuclease III [Mogibacterium sp. CM50]
Length = 249
Score = 99.0 bits (245), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 67/192 (34%), Positives = 98/192 (51%), Gaps = 28/192 (14%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIW 85
K+ +GRVI E++ FYL+ Y PN+ ++E R +++ ++ ++ + KP+++
Sbjct: 83 KHNDEGRVITLEYDDFYLICAYVPNS--QDELKRIDYRMEYEDDLRAYMSKLDKVKPVVY 140
Query: 86 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 145
CGDLNV+HEEID+ +P K + G GF+ ER + +L G D
Sbjct: 141 CGDLNVAHEEIDLKNP---------------KSNRGNAGFSDEERSKMTELLGAG-FTDT 184
Query: 146 YRFLHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGF 204
YR LH D +S WS + RIDYFIVS L+ +I + L
Sbjct: 185 YRHLH--PDTPGVYSWWSYRFNARANNAGWRIDYFIVSNRLETKIKEAAI------LTDV 236
Query: 205 YGSDHCPVSLEL 216
YGSDHCPVSL L
Sbjct: 237 YGSDHCPVSLVL 248
>gi|217031877|ref|ZP_03437380.1| hypothetical protein HPB128_199g85 [Helicobacter pylori B128]
gi|298735503|ref|YP_003728024.1| exodeoxyribonuclease III [Helicobacter pylori B8]
gi|216946529|gb|EEC25131.1| hypothetical protein HPB128_199g85 [Helicobacter pylori B128]
gi|298354688|emb|CBI65560.1| exodeoxyribonuclease III [Helicobacter pylori B8]
Length = 250
Score = 99.0 bits (245), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 64/191 (33%), Positives = 97/191 (50%), Gaps = 26/191 (13%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIW 85
+++ +GRVI EFE+FYL+N Y PN+ ++ + R W+ ++F+ KP+I
Sbjct: 84 EHDKEGRVITCEFESFYLVNVYTPNS--QQALSRLSYRMSWEVEFKKFLKALELKKPVIV 141
Query: 86 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 145
CGDLNV+H EID+ +P K + GF+ ER +F +L G ID
Sbjct: 142 CGDLNVAHNEIDLENP---------------KTNRKNAGFSDEERGKFSELLNAG-FIDT 185
Query: 146 YRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 205
+R+ + K+ + WS + + RIDYF+ S LK R+ + +
Sbjct: 186 FRYFYPNKEKAYTW-WSYMQQARDKDIGWRIDYFLCSNPLKTRL------KDALIYKDIL 238
Query: 206 GSDHCPVSLEL 216
GSDHCPV LEL
Sbjct: 239 GSDHCPVGLEL 249
>gi|403669653|ref|ZP_10934844.1| exodeoxyribonuclease [Kurthia sp. JC8E]
Length = 253
Score = 99.0 bits (245), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 65/191 (34%), Positives = 99/191 (51%), Gaps = 30/191 (15%)
Query: 29 EPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCG 87
E +GR+I E+E FY++ Y PN+ K + + R W+ ++ ++ Q KP+I+CG
Sbjct: 86 EDEGRIITLEYENFYVVTVYTPNS--KRDLARLEERLVWEDDLRVYLQQLDAQKPVIYCG 143
Query: 88 DLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYR 147
DLNV+HEEID+ + K + G GFT ER + +L G D++R
Sbjct: 144 DLNVAHEEIDLKNA---------------KSNVGNSGFTDGERSKMTLLLNSG-FTDSFR 187
Query: 148 FLHKEKDMDCGFSWSGNPIGKYRGKRM--RIDYFIVSEELKDRIIACEMQGHGIELEGFY 205
HK F+W + + K R + + RIDYFIVS+ L +I E+ +
Sbjct: 188 --HKYPTESNRFTW-WSYMNKVRERNIGWRIDYFIVSDRLVPQIETAEIHDQQL------ 238
Query: 206 GSDHCPVSLEL 216
GSDHCP++L L
Sbjct: 239 GSDHCPIALTL 249
>gi|384899763|ref|YP_005775143.1| exodeoxyribonuclease [Helicobacter pylori F30]
gi|317179707|dbj|BAJ57495.1| exodeoxyribonuclease [Helicobacter pylori F30]
Length = 250
Score = 99.0 bits (245), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 65/192 (33%), Positives = 99/192 (51%), Gaps = 28/192 (14%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEF--VLQCSGKPLI 84
+++ +GRV+ EFE+FYL+N Y PN+ ++ + R W+ ++F VL+ KP+I
Sbjct: 84 EHDKEGRVVTCEFESFYLVNVYTPNS--QQALSRLSYRMSWEVEFRKFLKVLELK-KPVI 140
Query: 85 WCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLID 144
CGDLNV+H EID+ +P K + GF+ ER +F +L G ID
Sbjct: 141 VCGDLNVAHNEIDLENP---------------KTNRKNAGFSDEERGKFNELLNAG-FID 184
Query: 145 AYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGF 204
+R+ + K+ + WS + + RIDYF+ S LK R+ + +
Sbjct: 185 TFRYFYPNKEKAYTW-WSYMQQARDKNIGWRIDYFLCSNPLKTRL------KDALIYKDI 237
Query: 205 YGSDHCPVSLEL 216
GSDHCPV LEL
Sbjct: 238 LGSDHCPVGLEL 249
>gi|145534702|ref|XP_001453095.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124420795|emb|CAK85698.1| unnamed protein product [Paramecium tetraurelia]
Length = 348
Score = 99.0 bits (245), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 68/191 (35%), Positives = 99/191 (51%), Gaps = 26/191 (13%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIW 85
K++ +GR + AE+E FYL+ Y PN G K E + R ++WD Q ++ KP I
Sbjct: 178 KHDQEGRTLTAEYERFYLVACYVPNAGQKLERLDY-RTKEWDVDFQNYLEDLRKKKPTIL 236
Query: 86 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 145
CGDLNVSH EID+++P NK+ GFT ER +F L++G +D+
Sbjct: 237 CGDLNVSHHEIDLANP------------AGNKK---TAGFTQEERDQFTNYLQKG-WVDS 280
Query: 146 YRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 205
+R LH ++ FS N K K R+DYFI+++E D II ++
Sbjct: 281 FRHLHPKEVKYSYFSARFN--SKQSNKGWRLDYFIINKESTDAIIMSDIN------TAVE 332
Query: 206 GSDHCPVSLEL 216
GSDH P+ E+
Sbjct: 333 GSDHVPIECEV 343
>gi|406666269|ref|ZP_11074037.1| Exodeoxyribonuclease [Bacillus isronensis B3W22]
gi|405385808|gb|EKB45239.1| Exodeoxyribonuclease [Bacillus isronensis B3W22]
Length = 252
Score = 99.0 bits (245), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 62/189 (32%), Positives = 99/189 (52%), Gaps = 30/189 (15%)
Query: 31 DGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIWCGDL 89
+GR++ E+E FYL+NTY PN K + + R W+ R++ ++ + K P+I+CGDL
Sbjct: 88 EGRILTLEYENFYLVNTYTPNA--KRDLTRLEERLLWEDRMRIYLKELDAKKPVIYCGDL 145
Query: 90 NVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFL 149
NV+H E+D+ + K + G GFT ER + +L G D +R
Sbjct: 146 NVAHSELDIKNV---------------KSNIGNSGFTYEERGKMTDLLTSG-FTDTFRHF 189
Query: 150 HKEKDMDCGFSWSGNPIGKYRGKRM--RIDYFIVSEELKDRIIACEMQGHGIELEGFYGS 207
H D+ F+W + + K R + + RIDYFI+S+ L ++I + + GS
Sbjct: 190 H--PDVTDHFTW-WSYMAKVRERNIGWRIDYFIISDRLVEKIEEASIHSEIL------GS 240
Query: 208 DHCPVSLEL 216
DHCP+ L+L
Sbjct: 241 DHCPIVLKL 249
>gi|420488041|ref|ZP_14986644.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-8]
gi|420521916|ref|ZP_15020345.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-8b]
gi|393101431|gb|EJC02003.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-8]
gi|393126486|gb|EJC26937.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-8b]
Length = 250
Score = 99.0 bits (245), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 64/191 (33%), Positives = 97/191 (50%), Gaps = 26/191 (13%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIW 85
+++ +GRVI EFE+FYL+N Y PN+ ++ + R W+ ++F+ KP+I
Sbjct: 84 EHDKEGRVITCEFESFYLVNVYTPNS--QQALSRLSYRMSWEVEFKKFLKALELKKPVIV 141
Query: 86 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 145
CGDLNV+H EID+ +P K + GF+ ER +F +L G ID
Sbjct: 142 CGDLNVAHNEIDLENP---------------KTNRKNAGFSDEERGKFNELLNAG-FIDT 185
Query: 146 YRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 205
+R+ + K+ + WS + + RIDYF+ S LK R+ + +
Sbjct: 186 FRYFYPNKEKAYTW-WSYMQQARDKDIGWRIDYFLCSNPLKTRL------KDALIYKDIL 238
Query: 206 GSDHCPVSLEL 216
GSDHCPV LEL
Sbjct: 239 GSDHCPVGLEL 249
>gi|421719100|ref|ZP_16158390.1| exodeoxyribonuclease III [Helicobacter pylori R038b]
gi|407218577|gb|EKE88401.1| exodeoxyribonuclease III [Helicobacter pylori R038b]
Length = 250
Score = 99.0 bits (245), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 63/191 (32%), Positives = 97/191 (50%), Gaps = 26/191 (13%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIW 85
+++ +GRV+ EFE+FYL+N Y PN+ ++ + R W+ ++F+ KP+I
Sbjct: 84 EHDKEGRVVTCEFESFYLVNVYTPNS--QQALSRLSYRMSWEVEFKKFLKALELKKPVIV 141
Query: 86 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 145
CGDLNV+H EID+ +P K + GF+ ER +F +L G ID
Sbjct: 142 CGDLNVAHNEIDLENP---------------KTNRKNAGFSDEERGKFSELLNAG-FIDT 185
Query: 146 YRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 205
+R+ + K+ + WS + + RIDYF+ S LK R+ + +
Sbjct: 186 FRYFYPNKEKAYTW-WSYMQQARDKNIGWRIDYFLCSNPLKTRL------KDALIYKDIL 238
Query: 206 GSDHCPVSLEL 216
GSDHCPV LEL
Sbjct: 239 GSDHCPVGLEL 249
>gi|357054575|ref|ZP_09115657.1| exodeoxyribonuclease [Clostridium clostridioforme 2_1_49FAA]
gi|355384175|gb|EHG31244.1| exodeoxyribonuclease [Clostridium clostridioforme 2_1_49FAA]
Length = 251
Score = 99.0 bits (245), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 62/190 (32%), Positives = 100/190 (52%), Gaps = 28/190 (14%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIW 85
+++ +GRVI AEF +Y++ Y PN+ ++ R KW+ ++ + KP+++
Sbjct: 85 EHDTEGRVITAEFPEYYVVTCYTPNS--QDGLARLDYRMKWEDDFLAYLKKLEKNKPVVF 142
Query: 86 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 145
CGDLNV+H+EID+ +P K + GFT ER +F +L G +D
Sbjct: 143 CGDLNVAHKEIDLKNP---------------KTNRKNAGFTDEERGKFTDLLAAG-FVDT 186
Query: 146 YRFLHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGF 204
+R+ + D++ +S WS + + RIDYF VSE LKDR+++ + +
Sbjct: 187 FRYFY--PDLEGIYSWWSYRFSARAKNAGWRIDYFCVSESLKDRLVSASIHNTVM----- 239
Query: 205 YGSDHCPVSL 214
GSDHCPV L
Sbjct: 240 -GSDHCPVEL 248
>gi|391340077|ref|XP_003744372.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase-like
[Metaseiulus occidentalis]
Length = 347
Score = 99.0 bits (245), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 68/199 (34%), Positives = 105/199 (52%), Gaps = 26/199 (13%)
Query: 19 FHFLLSALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC 78
+ LS +++ +GRVI EFE F+L+N+Y PN G R WD+ +++++
Sbjct: 173 VEYGLSLEEHDSEGRVITLEFEEFFLVNSYVPNAG--RGLVRLDYRLTWDRDFRKYLVGL 230
Query: 79 -SGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAIL 137
K +I GDLNV+H EID+ +P+ NK++ GFT ER+ +L
Sbjct: 231 KKKKSVILTGDLNVAHNEIDLKNPK------------TNKKN---AGFTEEERQGLTDLL 275
Query: 138 KEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGH 197
+EG +D +R L+ E++ F W+ + + R+DYFIVSE+L D +I E++
Sbjct: 276 EEG-FVDTFRKLYPEREGAYTF-WTYMMNARAKNVGWRLDYFIVSEDLIDNVIDNEIRST 333
Query: 198 GIELEGFYGSDHCPVSLEL 216
GSDHCPV L L
Sbjct: 334 ------VMGSDHCPVVLHL 346
>gi|315452849|ref|YP_004073119.1| exodeoxyribonuclease [Helicobacter felis ATCC 49179]
gi|315131901|emb|CBY82529.1| exodeoxyribonuclease [Helicobacter felis ATCC 49179]
Length = 255
Score = 99.0 bits (245), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 66/192 (34%), Positives = 102/192 (53%), Gaps = 26/192 (13%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQ-CSGKPLIW 85
+++ +GRVI E+E FYL+N Y PN+ + R +W+ +EF+ S K ++
Sbjct: 84 EHDTEGRVITCEYEYFYLVNVYTPNS--QRGLLRLPYRLQWESVFREFLQNLASHKEVLI 141
Query: 86 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 145
CGDLNV+H EID+++P+ + + N GF+ ER FG +L+ G LID
Sbjct: 142 CGDLNVAHTEIDLTNPQ---SNRYNA------------GFSDPERNAFGQLLQLG-LIDT 185
Query: 146 YRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 205
YR + +K + WS + R RIDYF+ S+ L+ ++ + H +
Sbjct: 186 YRHFYPDK-TEVYTWWSYMNQSRARNIGWRIDYFLASQGLRSQLKDACIYAHIL------ 238
Query: 206 GSDHCPVSLELS 217
GSDHCPV LE+S
Sbjct: 239 GSDHCPVGLEMS 250
>gi|357060646|ref|ZP_09121414.1| exodeoxyribonuclease [Alloprevotella rava F0323]
gi|355375951|gb|EHG23219.1| exodeoxyribonuclease [Alloprevotella rava F0323]
Length = 259
Score = 99.0 bits (245), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 61/192 (31%), Positives = 100/192 (52%), Gaps = 28/192 (14%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIW 85
+++ +GRVI E + F+L+ Y PN+ ++E R W+ +E++L+ + K P+I
Sbjct: 93 EHDHEGRVITLEMDNFFLITVYTPNS--QDELRRLDYRMTWEDAFREYLLELNKKKPVIV 150
Query: 86 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 145
CGDLNV+H+EID+ +P K + GFT ER++ +L G D
Sbjct: 151 CGDLNVAHQEIDLKNP---------------KTNRRNAGFTDEEREKMTQLLNAG-FTDT 194
Query: 146 YRFLHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGF 204
+RF + D+ +S WS + + RIDYF+VS L D++++ +
Sbjct: 195 FRFFN--PDLTGAYSWWSYRFRAREKNAGWRIDYFLVSNCLNDKLVSASIHNE------I 246
Query: 205 YGSDHCPVSLEL 216
+GSDHCPV + L
Sbjct: 247 FGSDHCPVEIVL 258
>gi|149692696|ref|XP_001505181.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase-like [Equus
caballus]
Length = 318
Score = 99.0 bits (245), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 63/192 (32%), Positives = 104/192 (54%), Gaps = 25/192 (13%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQ-CSGKPLIW 85
+++ +GRVI+AEF+ F L+ Y PN G + R++WD+ ++F+ S KPL+
Sbjct: 150 EHDQEGRVIVAEFDAFVLVTAYVPNAG--RGLVRLEYRQRWDEAFRKFLKGLASRKPLVL 207
Query: 86 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 145
CGDLNV+HEEID+ +P+ NK++ GFT ER+ FG +L+ L D+
Sbjct: 208 CGDLNVAHEEIDLRNPKG------------NKKN---AGFTPQERQGFGELLQAVPLADS 252
Query: 146 YRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 205
+R L+ F W+ + + R+DYF++S L + +++ +
Sbjct: 253 FRHLYPNTAYAYTF-WTYMMNARSKNVGWRLDYFLLSHSLLPALCDSKIRSKAL------ 305
Query: 206 GSDHCPVSLELS 217
GSDHCP++L L+
Sbjct: 306 GSDHCPITLYLA 317
>gi|387908710|ref|YP_006339044.1| exodeoxyribonuclease III [Helicobacter pylori XZ274]
gi|387573645|gb|AFJ82353.1| exodeoxyribonuclease III [Helicobacter pylori XZ274]
Length = 250
Score = 99.0 bits (245), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 63/191 (32%), Positives = 97/191 (50%), Gaps = 26/191 (13%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIW 85
+++ +GRV+ EFE+FYL+N Y PN+ ++ + R W+ ++F+ KP+I
Sbjct: 84 EHDKEGRVVTCEFESFYLVNVYTPNS--QQALSRLSYRMSWEVEFKKFLKALELKKPVIV 141
Query: 86 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 145
CGDLNV+H EID+ +P K + GF+ ER +F +L G ID
Sbjct: 142 CGDLNVAHNEIDLENP---------------KTNRKNAGFSDEERGKFNELLNAG-FIDT 185
Query: 146 YRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 205
+R+ + K+ + WS + + RIDYF+ S LK R+ + +
Sbjct: 186 FRYFYPNKEKAYTW-WSYMQQARDKNIGWRIDYFLCSNPLKTRL------KDALIYKDIL 238
Query: 206 GSDHCPVSLEL 216
GSDHCPV LEL
Sbjct: 239 GSDHCPVGLEL 249
>gi|359406465|ref|ZP_09199155.1| exodeoxyribonuclease III [Prevotella stercorea DSM 18206]
gi|357555725|gb|EHJ37349.1| exodeoxyribonuclease III [Prevotella stercorea DSM 18206]
Length = 249
Score = 99.0 bits (245), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 68/192 (35%), Positives = 96/192 (50%), Gaps = 29/192 (15%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIW 85
+++ +GRVI E E FYL+ Y PN+ ++ R KW+ +++ K P+I
Sbjct: 84 EHDHEGRVITLEMEDFYLVTCYTPNS--QDGLRRLDYRMKWEDDFLQYIKGLDAKKPVIV 141
Query: 86 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 145
CGDLNV+HEEID+ +P K + GFT E + A L EG ID
Sbjct: 142 CGDLNVAHEEIDLKNP---------------KTNRKNAGFTDEECAKMTAFLGEG-FIDT 185
Query: 146 YRFLHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGF 204
+R LH + D +S WS + + RIDYFI SE L++RI + +
Sbjct: 186 FRTLHPD---DPTYSWWSYRFKAREKNAGWRIDYFITSERLRERITSAAIHNE------V 236
Query: 205 YGSDHCPVSLEL 216
+GSDHCPV L L
Sbjct: 237 FGSDHCPVELIL 248
>gi|420449595|ref|ZP_14948464.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-44]
gi|393062395|gb|EJB63250.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-44]
Length = 250
Score = 99.0 bits (245), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 64/191 (33%), Positives = 97/191 (50%), Gaps = 26/191 (13%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIW 85
+++ +GRVI EFE+FYL+N Y PN+ ++ + R W+ ++F+ KP+I
Sbjct: 84 EHDKEGRVITCEFESFYLVNVYTPNS--QQALSRLSYRMSWEVEFKKFLKALELKKPVIV 141
Query: 86 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 145
CGDLNV+H EID+ +P K + GF+ ER +F +L G ID
Sbjct: 142 CGDLNVAHNEIDLENP---------------KTNRKNAGFSDEERGKFNELLNAG-FIDT 185
Query: 146 YRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 205
+R+ + K+ + WS + + RIDYF+ S LK R+ + +
Sbjct: 186 FRYFYPNKEKAYTW-WSYMQQARDKDIGWRIDYFLCSNPLKTRL------KDALIYKDIL 238
Query: 206 GSDHCPVSLEL 216
GSDHCPV LEL
Sbjct: 239 GSDHCPVGLEL 249
>gi|420397962|ref|ZP_14897175.1| exodeoxyribonuclease III [Helicobacter pylori CPY1962]
gi|393014636|gb|EJB15807.1| exodeoxyribonuclease III [Helicobacter pylori CPY1962]
Length = 250
Score = 99.0 bits (245), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 63/191 (32%), Positives = 97/191 (50%), Gaps = 26/191 (13%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIW 85
+++ +GRV+ EFE+FYL+N Y PN+ ++ + R W+ ++F+ KP+I
Sbjct: 84 EHDKEGRVVTCEFESFYLVNVYTPNS--QQALSRLSYRMSWEVEFKKFLKALELKKPVIV 141
Query: 86 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 145
CGDLNV+H EID+ +P K + GF+ ER +F +L G ID
Sbjct: 142 CGDLNVAHNEIDLENP---------------KTNRKNAGFSDEERGKFNELLNAG-FIDT 185
Query: 146 YRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 205
+R+ + K+ + WS + + RIDYF+ S LK R+ + +
Sbjct: 186 FRYFYPNKEKAYTW-WSYMQQARDKNIGWRIDYFLCSNPLKTRL------KDALIYKDIL 238
Query: 206 GSDHCPVSLEL 216
GSDHCPV LEL
Sbjct: 239 GSDHCPVGLEL 249
>gi|420424301|ref|ZP_14923369.1| exodeoxyribonuclease III [Helicobacter pylori Hp A-4]
gi|393039589|gb|EJB40616.1| exodeoxyribonuclease III [Helicobacter pylori Hp A-4]
Length = 250
Score = 99.0 bits (245), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 64/191 (33%), Positives = 97/191 (50%), Gaps = 26/191 (13%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIW 85
+++ +GRVI EFE+FYL+N Y PN+ ++ + R W+ ++F+ KP+I
Sbjct: 84 EHDKEGRVITCEFESFYLVNVYTPNS--QQALSRLSYRMSWEVEFRKFLKALELKKPVIV 141
Query: 86 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 145
CGDLNV+H EID+ +P K + GF+ ER +F +L G ID
Sbjct: 142 CGDLNVAHNEIDLENP---------------KTNRKNAGFSDEERGKFNELLNAG-FIDT 185
Query: 146 YRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 205
+R+ + K+ + WS + + RIDYF+ S LK R+ + +
Sbjct: 186 FRYFYPNKEKAYTW-WSYMQQARDKDIGWRIDYFLCSNPLKTRL------KDALIYKDIL 238
Query: 206 GSDHCPVSLEL 216
GSDHCPV LEL
Sbjct: 239 GSDHCPVGLEL 249
>gi|331092367|ref|ZP_08341193.1| exodeoxyribonuclease [Lachnospiraceae bacterium 2_1_46FAA]
gi|330401391|gb|EGG80977.1| exodeoxyribonuclease [Lachnospiraceae bacterium 2_1_46FAA]
Length = 250
Score = 99.0 bits (245), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 65/192 (33%), Positives = 99/192 (51%), Gaps = 28/192 (14%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIW 85
+++ +GR+I EF FY Y PN+ + E R +W+ ++ + KP+I+
Sbjct: 84 EHDKEGRLITLEFPEFYFATVYTPNS--QNELARLDYRMQWETDFLAYMKKLEEKKPVIF 141
Query: 86 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 145
CGDLNV+H EID+ +P K + GFT ER +FG +L G ID
Sbjct: 142 CGDLNVAHREIDLKNP---------------KTNRKNAGFTDEERGKFGELLDAG-FIDT 185
Query: 146 YRFLHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGF 204
+R+ + DM+ +S WS + + RIDYF VSE L++R+ ++ L
Sbjct: 186 FRYFY--PDMEGIYSWWSYRFRAREKNAGWRIDYFCVSESLRERLADAKI------LTYI 237
Query: 205 YGSDHCPVSLEL 216
+GSDHCPV L+L
Sbjct: 238 FGSDHCPVELDL 249
>gi|443631581|ref|ZP_21115762.1| exodeoxyribonuclease III [Bacillus subtilis subsp. inaquosorum KCTC
13429]
gi|443349386|gb|ELS63442.1| exodeoxyribonuclease III [Bacillus subtilis subsp. inaquosorum KCTC
13429]
Length = 252
Score = 99.0 bits (245), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 65/193 (33%), Positives = 99/193 (51%), Gaps = 28/193 (14%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIW 85
+++ +GRVI EFE +++ Y PN K R +W++ + ++L+ KP+I
Sbjct: 85 EHDQEGRVITLEFENMFVMTVYTPNA--KRGLERIDYRMQWEEDLLSYILELDQKKPVIL 142
Query: 86 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 145
CGDLNV+H+EID+ +P K + GF+ ER F L+ G ID+
Sbjct: 143 CGDLNVAHQEIDLKNP---------------KANRNNAGFSDQERGAFTRFLEAG-FIDS 186
Query: 146 YRFLHKEKDMDCGFSWSGNPIG-KYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGF 204
+R H D++ +SW G + R RIDYF+VSE LKD+I + +
Sbjct: 187 FR--HVYPDLEGAYSWWSYRAGARDRNIGWRIDYFVVSERLKDQIEDASISADVM----- 239
Query: 205 YGSDHCPVSLELS 217
GSDHCPV L ++
Sbjct: 240 -GSDHCPVELMIN 251
>gi|387783040|ref|YP_005793753.1| exodeoxyribonuclease [Helicobacter pylori 51]
gi|261838799|gb|ACX98565.1| exodeoxyribonuclease [Helicobacter pylori 51]
Length = 250
Score = 99.0 bits (245), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 63/191 (32%), Positives = 97/191 (50%), Gaps = 26/191 (13%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIW 85
+++ +GRV+ EFE+FYL+N Y PN+ ++ + R W+ ++F+ KP+I
Sbjct: 84 EHDKEGRVVTCEFESFYLVNVYTPNS--QQALSRLSYRMSWEVEFKKFLKALELKKPVIV 141
Query: 86 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 145
CGDLNV+H EID+ +P K + GF+ ER +F +L G ID
Sbjct: 142 CGDLNVAHNEIDLENP---------------KTNRKNAGFSDEERGKFNELLNAG-FIDT 185
Query: 146 YRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 205
+R+ + K+ + WS + + RIDYF+ S LK R+ + +
Sbjct: 186 FRYFYPNKEKAYTW-WSYMQQARDKNIGWRIDYFLCSNPLKTRL------KDALIYKDIL 238
Query: 206 GSDHCPVSLEL 216
GSDHCPV LEL
Sbjct: 239 GSDHCPVGLEL 249
>gi|208435390|ref|YP_002267056.1| exodeoxyribonuclease III [Helicobacter pylori G27]
gi|208433319|gb|ACI28190.1| exodeoxyribonuclease [Helicobacter pylori G27]
Length = 250
Score = 99.0 bits (245), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 63/191 (32%), Positives = 97/191 (50%), Gaps = 26/191 (13%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIW 85
+++ +GRV+ EFE+FYL+N Y PN+ ++ + R W+ ++F+ KP+I
Sbjct: 84 EHDKEGRVVTCEFESFYLVNVYTPNS--QQALSRLSYRMSWEVEFRKFLKALELKKPVIV 141
Query: 86 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 145
CGDLNV+H EID+ +P K + GF+ ER +F +L G ID
Sbjct: 142 CGDLNVAHNEIDLENP---------------KTNRKNAGFSDEERGKFSELLNAG-FIDT 185
Query: 146 YRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 205
+R+ + K+ + WS + + RIDYF+ S LK R+ + +
Sbjct: 186 FRYFYPNKEKAYTW-WSYMQQARDKNIGWRIDYFLCSNPLKTRL------KDALIYKDIL 238
Query: 206 GSDHCPVSLEL 216
GSDHCPV LEL
Sbjct: 239 GSDHCPVGLEL 249
>gi|420397741|ref|ZP_14896957.1| exodeoxyribonuclease III [Helicobacter pylori CPY1313]
gi|393011286|gb|EJB12474.1| exodeoxyribonuclease III [Helicobacter pylori CPY1313]
Length = 250
Score = 99.0 bits (245), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 63/191 (32%), Positives = 97/191 (50%), Gaps = 26/191 (13%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIW 85
+++ +GRV+ EFE+FYL+N Y PN+ ++ + R W+ ++F+ KP+I
Sbjct: 84 EHDKEGRVVTCEFESFYLVNVYTPNS--QQALSRLSYRMSWEVEFRKFLKALELKKPVIV 141
Query: 86 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 145
CGDLNV+H EID+ +P K + GF+ ER +F +L G ID
Sbjct: 142 CGDLNVAHNEIDLENP---------------KTNRKNAGFSDEERGKFSELLNAG-FIDT 185
Query: 146 YRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 205
+R+ + K+ + WS + + RIDYF+ S LK R+ + +
Sbjct: 186 FRYFYPNKEKAYTW-WSYMQQARDKNIGWRIDYFLCSNPLKTRL------KDALIYKDIL 238
Query: 206 GSDHCPVSLEL 216
GSDHCPV LEL
Sbjct: 239 GSDHCPVGLEL 249
>gi|108563814|ref|YP_628130.1| exodeoxyribonuclease III [Helicobacter pylori HPAG1]
gi|107837587|gb|ABF85456.1| exodeoxyribonuclease [Helicobacter pylori HPAG1]
Length = 250
Score = 99.0 bits (245), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 63/191 (32%), Positives = 97/191 (50%), Gaps = 26/191 (13%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIW 85
+++ +GRV+ EFE+FYL+N Y PN+ ++ + R W+ ++F+ KP+I
Sbjct: 84 EHDKEGRVVTCEFESFYLVNVYTPNS--QQALSRLSYRMSWEVEFKKFLKALELKKPVIV 141
Query: 86 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 145
CGDLNV+H EID+ +P K + GF+ ER +F +L G ID
Sbjct: 142 CGDLNVAHNEIDLENP---------------KTNRKNAGFSDEERGKFSELLNAG-FIDT 185
Query: 146 YRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 205
+R+ + K+ + WS + + RIDYF+ S LK R+ + +
Sbjct: 186 FRYFYPNKEKAYTW-WSYMQQARDKNIGWRIDYFLCSNPLKTRL------KDALIYKDIL 238
Query: 206 GSDHCPVSLEL 216
GSDHCPV LEL
Sbjct: 239 GSDHCPVGLEL 249
>gi|355668893|gb|AER94340.1| APEX nuclease 1 [Mustela putorius furo]
Length = 317
Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 63/192 (32%), Positives = 104/192 (54%), Gaps = 25/192 (13%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQ-CSGKPLIW 85
+++ +GRVI+AEF+ F L+ Y PN G + R++WD+ ++F+ S KPL+
Sbjct: 149 EHDQEGRVIVAEFDAFVLVTAYVPNAG--RGLVRLEYRQRWDEAFRKFLKGLASRKPLVL 206
Query: 86 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 145
CGDLNV+HEEID+ +P+ NK++ GFT ER+ FG +L+ L D+
Sbjct: 207 CGDLNVAHEEIDLRNPKG------------NKKN---AGFTPQERQGFGELLQAVPLADS 251
Query: 146 YRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 205
+R L+ F W+ + + R+DYF++S L + +++ +
Sbjct: 252 FRHLYPNTAYAYTF-WTYMMNARSKNVGWRLDYFLLSHSLLPALCDSKIRSKAL------ 304
Query: 206 GSDHCPVSLELS 217
GSDHCP++L L+
Sbjct: 305 GSDHCPITLYLA 316
>gi|344305891|ref|XP_003421623.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase-like
[Loxodonta africana]
Length = 318
Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 63/192 (32%), Positives = 104/192 (54%), Gaps = 25/192 (13%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQ-CSGKPLIW 85
+++ +GRVI+AEF+ F L+ Y PN G R++WD+ ++F+ S KPL+
Sbjct: 150 EHDQEGRVIVAEFDAFVLVTVYVPNAG--RGLVRLDYRQRWDEAFRKFLKGLASRKPLVL 207
Query: 86 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 145
CGDLNV+HEEID+ +P+ NK++ GFT ER+ FG +L+ L D+
Sbjct: 208 CGDLNVAHEEIDLRNPKG------------NKKN---AGFTPQERQGFGELLQAVPLADS 252
Query: 146 YRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 205
+R L+ + F W+ + + R+DYF++S L + +++ +
Sbjct: 253 FRHLYPDTAYAYTF-WTYMMNARSKNVGWRLDYFLLSHSLLPALCDSKIRSKAL------ 305
Query: 206 GSDHCPVSLELS 217
GSDHCP++L L+
Sbjct: 306 GSDHCPITLLLA 317
>gi|384895292|ref|YP_005769281.1| exodeoxyribonuclease III [Helicobacter pylori 35A]
gi|315585908|gb|ADU40289.1| exodeoxyribonuclease III [Helicobacter pylori 35A]
Length = 250
Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 63/191 (32%), Positives = 97/191 (50%), Gaps = 26/191 (13%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIW 85
+++ +GRV+ EFE+FYL+N Y PN+ ++ + R W+ ++F+ KP+I
Sbjct: 84 EHDKEGRVVTCEFESFYLVNVYTPNS--QQALSRLSYRMSWEVEFRKFLKALELKKPVIV 141
Query: 86 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 145
CGDLNV+H EID+ +P K + GF+ ER +F +L G ID
Sbjct: 142 CGDLNVAHNEIDLENP---------------KTNRKNAGFSDEERGKFNELLNAG-FIDT 185
Query: 146 YRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 205
+R+ + K+ + WS + + RIDYF+ S LK R+ + +
Sbjct: 186 FRYFYPNKEKAYTW-WSYMQQARDKNIGWRIDYFLCSNPLKTRL------KDALIYKDIL 238
Query: 206 GSDHCPVSLEL 216
GSDHCPV LEL
Sbjct: 239 GSDHCPVGLEL 249
>gi|409386093|ref|ZP_11238562.1| Exodeoxyribonuclease III [Lactococcus raffinolactis 4877]
gi|399206574|emb|CCK19477.1| Exodeoxyribonuclease III [Lactococcus raffinolactis 4877]
Length = 277
Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 63/191 (32%), Positives = 93/191 (48%), Gaps = 29/191 (15%)
Query: 29 EPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCG 87
+ +GR+I EF+ FYL Y PN G + R+ WD++ ++++L+ KP+I G
Sbjct: 111 DSEGRIITLEFDNFYLTQVYTPNAG--DGLKRLAERQIWDEKYRDYLLELDAKKPVIATG 168
Query: 88 DLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYR 147
D NV+H EID++HP + PGFT ER+ F +L G D +R
Sbjct: 169 DYNVAHFEIDLAHP---------------NNNRNSPGFTDEERQGFTNLLSAG-FTDTFR 212
Query: 148 FLHKEKDMDCGFSW--SGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 205
+H + + +SW + K RIDYFI SE + D+I A EM G
Sbjct: 213 HVHGQ--VPNVYSWWAQRSKTSKINNAGWRIDYFIASERIADKICASEMIDSGAR----- 265
Query: 206 GSDHCPVSLEL 216
DH P+ LE+
Sbjct: 266 -QDHTPILLEI 275
>gi|384177745|ref|YP_005559130.1| exodeoxyribonuclease III [Bacillus subtilis subsp. subtilis str.
RO-NN-1]
gi|349596969|gb|AEP93156.1| exodeoxyribonuclease III [Bacillus subtilis subsp. subtilis str.
RO-NN-1]
Length = 252
Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 64/190 (33%), Positives = 100/190 (52%), Gaps = 28/190 (14%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIW 85
+++ +GRVI EFE Y++ Y PN+ E + R +W++ + ++L+ KP+I
Sbjct: 85 EHDQEGRVITLEFENVYVMTVYTPNSRRGLERIDY--RMQWEEALLSYILELEKKKPVIL 142
Query: 86 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 145
CGDLNV+H+EID+ +P K + GF+ ER+ F L+ G +D+
Sbjct: 143 CGDLNVAHQEIDLKNP---------------KANRNNAGFSDQEREAFTRFLEAG-FVDS 186
Query: 146 YRFLHKEKDMDCGFSWSGNPIG-KYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGF 204
+R H D++ +SW G + R RIDYF+VSE LK++I + +
Sbjct: 187 FR--HVYPDLEGAYSWWSYRAGARDRNIGWRIDYFVVSESLKEQIEDASISADVM----- 239
Query: 205 YGSDHCPVSL 214
GSDHCPV L
Sbjct: 240 -GSDHCPVEL 248
>gi|421712459|ref|ZP_16151793.1| exodeoxyribonuclease III [Helicobacter pylori R030b]
gi|407209732|gb|EKE79620.1| exodeoxyribonuclease III [Helicobacter pylori R030b]
Length = 250
Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 64/191 (33%), Positives = 97/191 (50%), Gaps = 26/191 (13%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIW 85
+++ +GRVI EFE+FYL+N Y PN+ ++ + R W+ ++F+ KP+I
Sbjct: 84 EHDKEGRVITCEFESFYLVNVYTPNS--QQALSRLSYRMSWEVEFRKFLKALELKKPVIV 141
Query: 86 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 145
CGDLNV+H EID+ +P K + GF+ ER +F +L G ID
Sbjct: 142 CGDLNVAHNEIDLENP---------------KTNRKNAGFSDEERGKFNELLNAG-FIDT 185
Query: 146 YRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 205
+R+ + K+ + WS + + RIDYF+ S LK R+ + +
Sbjct: 186 FRYFYPNKEKAYTW-WSYMQQARDKDIGWRIDYFLCSNPLKTRL------KDALIYKDIL 238
Query: 206 GSDHCPVSLEL 216
GSDHCPV LEL
Sbjct: 239 GSDHCPVGLEL 249
>gi|207091978|ref|ZP_03239765.1| exodeoxyribonuclease [Helicobacter pylori HPKX_438_AG0C1]
Length = 250
Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 63/191 (32%), Positives = 97/191 (50%), Gaps = 26/191 (13%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIW 85
+++ +GRV+ EFE+FYL+N Y PN+ ++ + R W+ ++F+ KP+I
Sbjct: 84 EHDKEGRVVTCEFESFYLVNVYTPNS--QQALSRISYRMSWEVEFKKFLKALELKKPVIV 141
Query: 86 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 145
CGDLNV+H EID+ +P K + GF+ ER +F +L G ID
Sbjct: 142 CGDLNVAHNEIDLENP---------------KTNRKNAGFSDEERGKFSELLNAG-FIDT 185
Query: 146 YRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 205
+R+ + K+ + WS + + RIDYF+ S LK R+ + +
Sbjct: 186 FRYFYPNKERAYTW-WSYMQQARDKNIGWRIDYFLCSNPLKTRL------KDALIYKDIL 238
Query: 206 GSDHCPVSLEL 216
GSDHCPV LEL
Sbjct: 239 GSDHCPVGLEL 249
>gi|157127237|ref|XP_001654881.1| ap endonuclease [Aedes aegypti]
gi|108872984|gb|EAT37209.1| AAEL010781-PA [Aedes aegypti]
Length = 612
Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 63/186 (33%), Positives = 100/186 (53%), Gaps = 28/186 (15%)
Query: 31 DGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIWCGDL 89
DGR++ AE+E F+L+ Y PN G + +R +WD++ +++ K P+I CGD+
Sbjct: 449 DGRLLTAEYEKFFLVCVYVPNAG--RGLVTLPKRMRWDEKFHKYLKDLDAKKPVILCGDM 506
Query: 90 NVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFL 149
NV+HEEID+++P+ NK++ GFT ER+ +L G +D +R L
Sbjct: 507 NVAHEEIDLANPKT------------NKKNA---GFTPEEREGMTKLLSLG-FVDTFRQL 550
Query: 150 HKEKDMDCGF-SWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSD 208
+ E+ F ++ GN K G R+DYFI SE +++ + G YGSD
Sbjct: 551 YPEQSGAYTFWTYMGNARAKNVG--WRLDYFITSERFVGKVV------DNVIRSGVYGSD 602
Query: 209 HCPVSL 214
HCP++L
Sbjct: 603 HCPLTL 608
>gi|387015594|gb|AFJ49916.1| DNA-(apurinic or apyrimidinic site) lyase-like [Crotalus
adamanteus]
Length = 316
Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 61/191 (31%), Positives = 105/191 (54%), Gaps = 26/191 (13%)
Query: 28 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWC 86
++ +GRVI AEF +++L+ TY PN G + R++WD+ + ++ + KPLI C
Sbjct: 150 HDKEGRVITAEFSSYFLVTTYVPNAG--RGLVRLEYRQRWDEAFRSYLKGLAARKPLILC 207
Query: 87 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 146
GDLNV+H+EID+ +P+ NK++ GFT ER F +L+ G +D +
Sbjct: 208 GDLNVAHQEIDLKNPK------------GNKKN---AGFTPEERAGFTQLLEAG-FVDTF 251
Query: 147 RFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYG 206
R L+ F W+ + + R+DYF+VS+EL++ + +++ + G
Sbjct: 252 RHLYPNTPYAYTF-WTYMMNARAKNVGWRLDYFVVSKELQEGLCDSKIRSTAL------G 304
Query: 207 SDHCPVSLELS 217
SDHCP++L ++
Sbjct: 305 SDHCPITLYVA 315
>gi|311070625|ref|YP_003975548.1| exodeoxyribonuclease III [Bacillus atrophaeus 1942]
gi|419820989|ref|ZP_14344593.1| exodeoxyribonuclease III [Bacillus atrophaeus C89]
gi|310871142|gb|ADP34617.1| exodeoxyribonuclease III [Bacillus atrophaeus 1942]
gi|388474900|gb|EIM11619.1| exodeoxyribonuclease III [Bacillus atrophaeus C89]
Length = 252
Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 65/196 (33%), Positives = 98/196 (50%), Gaps = 28/196 (14%)
Query: 23 LSALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GK 81
L +++ +GR+I EFE Y++ Y PN K R W+ ++ K
Sbjct: 81 LGIKEHDQEGRLITLEFENMYVITVYTPNA--KRGLERIDYRMDWEDAFLSYIKALDVKK 138
Query: 82 PLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGR 141
P++ CGDLNV+H+EID+ +P K + GF+ ER+RF +L+EG
Sbjct: 139 PVVLCGDLNVAHQEIDLKNP---------------KANRKNAGFSDQERERFSQMLEEG- 182
Query: 142 LIDAYRFLHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIE 200
ID +R+LH D + +S WS + + R+DYFIVSE LK +I ++ +
Sbjct: 183 FIDTFRYLH--PDQEGAYSWWSYRMNARAKNVGWRLDYFIVSERLKKQIRGAKICNEVM- 239
Query: 201 LEGFYGSDHCPVSLEL 216
GSDHCPV L +
Sbjct: 240 -----GSDHCPVELTI 250
>gi|160933576|ref|ZP_02080964.1| hypothetical protein CLOLEP_02430 [Clostridium leptum DSM 753]
gi|156867453|gb|EDO60825.1| exodeoxyribonuclease III [Clostridium leptum DSM 753]
Length = 261
Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 67/195 (34%), Positives = 100/195 (51%), Gaps = 27/195 (13%)
Query: 23 LSALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGK 81
L +++ +GRVI EF FYL Y PN+ +E R +W+ ++++ S K
Sbjct: 91 LGIEEHDQEGRVITLEFPAFYLTTVYTPNS--QEGLKRLSYRMEWEDAFRDYLKGLDSKK 148
Query: 82 PLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGR 141
P++ CGD+NV+H+EID+ +P K + GFT ER+RF +L G
Sbjct: 149 PVVVCGDMNVAHQEIDLKNP---------------KTNRKNAGFTDEERERFSQLLAAG- 192
Query: 142 LIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIEL 201
ID+YR L+ EK +S+ N G RIDYF+VS+ + RI ++ +
Sbjct: 193 FIDSYRSLYPEKIEYSWWSYRFNARKNNAG--WRIDYFLVSDRIGGRIQDAKIHTQVM-- 248
Query: 202 EGFYGSDHCPVSLEL 216
GSDHCPV L+L
Sbjct: 249 ----GSDHCPVELDL 259
>gi|168214660|ref|ZP_02640285.1| exodeoxyribonuclease III [Clostridium perfringens CPE str. F4969]
gi|422874042|ref|ZP_16920527.1| exodeoxyribonuclease III [Clostridium perfringens F262]
gi|170713849|gb|EDT26031.1| exodeoxyribonuclease III [Clostridium perfringens CPE str. F4969]
gi|380305037|gb|EIA17320.1| exodeoxyribonuclease III [Clostridium perfringens F262]
Length = 250
Score = 98.6 bits (244), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 63/189 (33%), Positives = 98/189 (51%), Gaps = 28/189 (14%)
Query: 28 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGKP-LIWC 86
++ +GRVI EFE F+++ Y PN+ + E + R +W+ + ++L+ S K ++ C
Sbjct: 85 HDKEGRVITLEFEDFFMVTVYTPNS--QSELARLEYRMEWEDDFRNYLLELSSKKGVVVC 142
Query: 87 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 146
GDLNV+H+EID+ +P K + GFT ER +F +L G ID +
Sbjct: 143 GDLNVAHKEIDLKNP---------------KTNRKNAGFTDEERDKFSTLLSSG-FIDTF 186
Query: 147 RFLHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 205
R+ + D++ +S WS + RIDYF+VS L+DRI + +
Sbjct: 187 RYFN--PDLEGVYSWWSYRFNARKNNAGWRIDYFLVSNNLEDRIKEASIDTEIL------ 238
Query: 206 GSDHCPVSL 214
GSDHCPV L
Sbjct: 239 GSDHCPVKL 247
>gi|109946643|ref|YP_663871.1| exodeoxyribonuclease III [Helicobacter acinonychis str. Sheeba]
gi|109713864|emb|CAJ98872.1| exodeoxyribonuclease [Helicobacter acinonychis str. Sheeba]
Length = 250
Score = 98.6 bits (244), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 63/191 (32%), Positives = 96/191 (50%), Gaps = 26/191 (13%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIW 85
+++ +GR+I EFE+FYL+N Y PN+ ++ + R W+ + F+ KP+I
Sbjct: 84 EHDKEGRIITCEFESFYLVNIYTPNS--QQALSRLNYRMSWEVEFRRFLKALELKKPVIV 141
Query: 86 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 145
CGDLNV+H EID+ +P K + GF+ ER +F +L G ID
Sbjct: 142 CGDLNVAHNEIDLENP---------------KTNRKNAGFSDEERGKFNELLNTG-FIDT 185
Query: 146 YRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 205
+R+ + K+ + WS + + RIDYF+ S LK R+ + +
Sbjct: 186 FRYFYPNKEKAYTW-WSYMQQARDKNIGWRIDYFLCSNSLKTRL------KDALIYKDIL 238
Query: 206 GSDHCPVSLEL 216
GSDHCPV LEL
Sbjct: 239 GSDHCPVGLEL 249
>gi|386753431|ref|YP_006226650.1| exodeoxyribonuclease III [Helicobacter pylori Shi169]
gi|386754997|ref|YP_006228215.1| exodeoxyribonuclease III [Helicobacter pylori Shi112]
gi|384559689|gb|AFI00157.1| exodeoxyribonuclease III [Helicobacter pylori Shi169]
gi|384561255|gb|AFI01722.1| exodeoxyribonuclease III [Helicobacter pylori Shi112]
Length = 250
Score = 98.6 bits (244), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 63/191 (32%), Positives = 97/191 (50%), Gaps = 26/191 (13%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIW 85
+++ +GRV+ EFE+FYL+N Y PN+ ++ + R W+ ++F+ KP+I
Sbjct: 84 EHDKEGRVVTCEFESFYLVNVYVPNS--QQALSRLSYRMSWEVEFRKFLKALELKKPVIV 141
Query: 86 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 145
CGDLNV+H EID+ +P K + GF+ ER +F +L G ID
Sbjct: 142 CGDLNVAHNEIDLENP---------------KTNRKNAGFSDEERGKFNELLNAG-FIDT 185
Query: 146 YRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 205
+R+ + K+ + WS + + RIDYF+ S LK R+ + +
Sbjct: 186 FRYFYPNKEKAYTW-WSYMQQARDKNIGWRIDYFLCSNPLKTRL------KDALIYKDIL 238
Query: 206 GSDHCPVSLEL 216
GSDHCPV LEL
Sbjct: 239 GSDHCPVGLEL 249
>gi|419842315|ref|ZP_14365665.1| exodeoxyribonuclease III [Fusobacterium necrophorum subsp.
funduliforme ATCC 51357]
gi|421501617|ref|ZP_15948576.1| exodeoxyribonuclease III [Fusobacterium necrophorum subsp.
funduliforme Fnf 1007]
gi|386902224|gb|EIJ67066.1| exodeoxyribonuclease III [Fusobacterium necrophorum subsp.
funduliforme ATCC 51357]
gi|402265769|gb|EJU15229.1| exodeoxyribonuclease III [Fusobacterium necrophorum subsp.
funduliforme Fnf 1007]
Length = 250
Score = 98.6 bits (244), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 67/196 (34%), Positives = 102/196 (52%), Gaps = 28/196 (14%)
Query: 23 LSALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GK 81
L +++ +GRVI EFE FY++ Y PN+ K E R W+ + ++ + + K
Sbjct: 80 LGIEEHDQEGRVICLEFEDFYMVTVYTPNS--KNELERLDYRMIWEDEFRNYLSKLNEKK 137
Query: 82 PLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGR 141
P++ CGD+NV+HEEID+ +P K + GFT ER +F +L+ G
Sbjct: 138 PVVVCGDMNVAHEEIDLKNP---------------KTNRRNAGFTDEERNKFTELLQAG- 181
Query: 142 LIDAYRFLHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIE 200
D++R+L+ D +S WS + RIDYF+VS + K++I E+ E
Sbjct: 182 FTDSFRYLY--PDTLHAYSWWSYRANARKNNTGWRIDYFVVSNDWKEQIQEAEIHA---E 236
Query: 201 LEGFYGSDHCPVSLEL 216
E GSDHCPV+L L
Sbjct: 237 QE---GSDHCPVALYL 249
>gi|420396107|ref|ZP_14895329.1| exodeoxyribonuclease III [Helicobacter pylori CPY1124]
gi|420402996|ref|ZP_14902182.1| exodeoxyribonuclease III [Helicobacter pylori CPY6261]
gi|393011086|gb|EJB12275.1| exodeoxyribonuclease III [Helicobacter pylori CPY1124]
gi|393020162|gb|EJB21301.1| exodeoxyribonuclease III [Helicobacter pylori CPY6261]
Length = 250
Score = 98.6 bits (244), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 63/191 (32%), Positives = 97/191 (50%), Gaps = 26/191 (13%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIW 85
+++ +GRV+ EFE+FYL+N Y PN+ ++ + R W+ ++F+ KP+I
Sbjct: 84 EHDKEGRVVTCEFESFYLVNVYTPNS--QQALSRLSYRMSWEVEFRKFLKALELKKPVIV 141
Query: 86 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 145
CGDLNV+H EID+ +P K + GF+ ER +F +L G ID
Sbjct: 142 CGDLNVAHNEIDLENP---------------KTNRKNAGFSDEERGKFNELLNAG-FIDT 185
Query: 146 YRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 205
+R+ + K+ + WS + + RIDYF+ S LK R+ + +
Sbjct: 186 FRYFYPNKEKAYTW-WSYMQQARDKNIGWRIDYFLCSNPLKTRL------KDALIYKDIL 238
Query: 206 GSDHCPVSLEL 216
GSDHCPV LEL
Sbjct: 239 GSDHCPVGLEL 249
>gi|309775417|ref|ZP_07670420.1| exodeoxyribonuclease III [Erysipelotrichaceae bacterium 3_1_53]
gi|308916806|gb|EFP62543.1| exodeoxyribonuclease III [Erysipelotrichaceae bacterium 3_1_53]
Length = 254
Score = 98.6 bits (244), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 66/199 (33%), Positives = 103/199 (51%), Gaps = 26/199 (13%)
Query: 23 LSALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GK 81
L +++ +GRVI E+E FYL+ Y PN+ K+ R +W+ + ++ + + K
Sbjct: 80 LGIEEHDHEGRVITCEYEDFYLVCVYTPNS--KDGLLRLDYRMEWEDAFRTYLHKLNETK 137
Query: 82 PLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGR 141
++ CGDLNV+H+EID+ +P K + GFT ER + +L G
Sbjct: 138 SVLVCGDLNVAHKEIDLKNP---------------KTNRRNAGFTDEERNKMSVLLDSG- 181
Query: 142 LIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIEL 201
ID+YR+L+ E++ + WS + + RIDYF+VSE+ KD I ++
Sbjct: 182 FIDSYRYLYPEQEGVYSW-WSYRFKAREKNAGWRIDYFLVSEDAKDGIREAKIH------ 234
Query: 202 EGFYGSDHCPVSLELSEAS 220
YGSDHCPVSLE +
Sbjct: 235 TDIYGSDHCPVSLEFETKT 253
>gi|188585577|ref|YP_001917122.1| exodeoxyribonuclease III [Natranaerobius thermophilus JW/NM-WN-LF]
gi|179350264|gb|ACB84534.1| exodeoxyribonuclease III [Natranaerobius thermophilus JW/NM-WN-LF]
Length = 251
Score = 98.6 bits (244), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 63/193 (32%), Positives = 100/193 (51%), Gaps = 28/193 (14%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIW 85
K++ +GRVI EF +YL+N Y PN+ + E R +W+ + +++ S KP+I
Sbjct: 84 KHDKEGRVITLEFCDYYLVNVYTPNS--QRELARLDYRLQWEDAFKNYLVNLDSEKPVIV 141
Query: 86 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 145
CGDLNV+H+EID+ +P K + GFT ER + +L G ID
Sbjct: 142 CGDLNVAHKEIDLKNP---------------KNNKRNAGFTEEERNKLTELLNAG-FIDT 185
Query: 146 YRFLHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGF 204
+R+ + D + ++ WS + R RIDYF+ S++L + + E+
Sbjct: 186 FRYFY--PDTEGAYTWWSYITKARERNAGWRIDYFLASQKLDNWLTDAEIHAD------I 237
Query: 205 YGSDHCPVSLELS 217
GSDHCPV+L+L+
Sbjct: 238 MGSDHCPVALKLA 250
>gi|167748893|ref|ZP_02421020.1| hypothetical protein ANACAC_03667 [Anaerostipes caccae DSM 14662]
gi|317470265|ref|ZP_07929659.1| exodeoxyribonuclease III [Anaerostipes sp. 3_2_56FAA]
gi|167651863|gb|EDR95992.1| exodeoxyribonuclease III [Anaerostipes caccae DSM 14662]
gi|316902238|gb|EFV24158.1| exodeoxyribonuclease III [Anaerostipes sp. 3_2_56FAA]
Length = 251
Score = 98.6 bits (244), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 66/192 (34%), Positives = 100/192 (52%), Gaps = 28/192 (14%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIW 85
+++ +GRVI EF+ ++L+ Y PN+ + E R W++ +E++L+ KP+I
Sbjct: 85 EFDHEGRVITLEFDDYFLVTCYTPNS--QSELARLSYRMDWEENFREYLLKLEEDKPVIL 142
Query: 86 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 145
CGDLNV+H EID+ +P K + GFT ER++F +L+ G ID
Sbjct: 143 CGDLNVAHTEIDLKNP---------------KTNRKNAGFTDEEREKFTKLLEAG-FIDT 186
Query: 146 YRFLHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGF 204
+R H D+ +S WS + + RIDYF VSE L++R+ +
Sbjct: 187 FR--HFYPDVTEAYSWWSYRFRAREKNAGWRIDYFCVSEGLEERL------AEAVIHTDI 238
Query: 205 YGSDHCPVSLEL 216
YGSDHCPV L L
Sbjct: 239 YGSDHCPVGLYL 250
>gi|308183626|ref|YP_003927753.1| exodeoxyribonuclease III [Helicobacter pylori PeCan4]
gi|384893489|ref|YP_005767582.1| exodeoxyribonuclease III [Helicobacter pylori Cuz20]
gi|308062786|gb|ADO04674.1| exodeoxyribonuclease III [Helicobacter pylori Cuz20]
gi|308065811|gb|ADO07703.1| exodeoxyribonuclease III [Helicobacter pylori PeCan4]
Length = 250
Score = 98.6 bits (244), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 63/191 (32%), Positives = 97/191 (50%), Gaps = 26/191 (13%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIW 85
+++ +GRV+ EFE+FYL+N Y PN+ ++ + R W+ ++F+ KP+I
Sbjct: 84 EHDKEGRVVTCEFESFYLVNVYVPNS--QQALSRLSYRMSWEVEFRKFLKALELKKPVIV 141
Query: 86 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 145
CGDLNV+H EID+ +P K + GF+ ER +F +L G ID
Sbjct: 142 CGDLNVAHNEIDLENP---------------KTNRKNAGFSDEERGKFNELLNAG-FIDT 185
Query: 146 YRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 205
+R+ + K+ + WS + + RIDYF+ S LK R+ + +
Sbjct: 186 FRYFYPNKEKAYTW-WSYMQQARDKNIGWRIDYFLCSNPLKTRL------KDALIYKDIL 238
Query: 206 GSDHCPVSLEL 216
GSDHCPV LEL
Sbjct: 239 GSDHCPVGLEL 249
>gi|218281326|ref|ZP_03487814.1| hypothetical protein EUBIFOR_00379 [Eubacterium biforme DSM 3989]
gi|218217511|gb|EEC91049.1| hypothetical protein EUBIFOR_00379 [Eubacterium biforme DSM 3989]
Length = 249
Score = 98.6 bits (244), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 65/191 (34%), Positives = 98/191 (51%), Gaps = 29/191 (15%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGKPLIWC 86
+++ +GRVI E+ +Y++ Y PN+G + R +WDK + L+ KP++ C
Sbjct: 85 EHDTEGRVITLEYPEYYVVTVYTPNSG--DGLKRLDYRMEWDKAFSAY-LKSLDKPVMAC 141
Query: 87 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 146
GD NV++EEID+ +P K + GFT ER F L +D Y
Sbjct: 142 GDFNVANEEIDIKNP---------------KTNHKNAGFTDEERNSFKENLL-AYFVDTY 185
Query: 147 RFLHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 205
R L+ EK +S WS + + RIDY++VS ELKD+I+ ++ L Y
Sbjct: 186 RSLYPEK---VEYSWWSYRFKAREKNAGWRIDYWLVSPELKDKIVDAKI------LTDIY 236
Query: 206 GSDHCPVSLEL 216
GSDHCPV L++
Sbjct: 237 GSDHCPVQLDI 247
>gi|160894365|ref|ZP_02075142.1| hypothetical protein CLOL250_01918 [Clostridium sp. L2-50]
gi|156864066|gb|EDO57497.1| exodeoxyribonuclease III [Clostridium sp. L2-50]
Length = 262
Score = 98.6 bits (244), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 60/192 (31%), Positives = 101/192 (52%), Gaps = 28/192 (14%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIW 85
+++ +GRVI E++ FY++ Y PN+ + E R KW+ +E++ Q KP++
Sbjct: 95 EHDHEGRVITLEYDNFYMVTVYTPNS--QNELARLDYRMKWEDDFREYLKQLEQTKPVVV 152
Query: 86 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 145
CGD+NV+H EID+ +P K + GFT ER++F +L G +D
Sbjct: 153 CGDMNVAHTEIDLKNP---------------KTNRKNAGFTDEEREKFSTLLDSG-FVDT 196
Query: 146 YRFLHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGF 204
+RF + D + +S WS + + RIDYF+ S+ L+ R++ ++ +
Sbjct: 197 FRFFN--PDAEGIYSWWSYRFKAREKNAGWRIDYFLTSKVLESRLVDAKIHTEVL----- 249
Query: 205 YGSDHCPVSLEL 216
GSDHCPV L++
Sbjct: 250 -GSDHCPVELDI 260
>gi|408907629|emb|CCM11287.1| Exodeoxyribonuclease III [Helicobacter heilmannii ASB1.4]
Length = 251
Score = 98.6 bits (244), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 66/193 (34%), Positives = 104/193 (53%), Gaps = 30/193 (15%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQ-CSGKPLIW 85
+++ +GRV++ E+ FYL+N Y PN + R W+K + F+ + K ++
Sbjct: 84 EHDLEGRVVVCEYSQFYLVNVYVPNA--QRGLLRLPYRLSWEKAFRGFLSGLVAHKGVLV 141
Query: 86 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 145
CGDLNV+H EID+++P+ A + N GF+ ER F A+L+EG ID
Sbjct: 142 CGDLNVAHTEIDLTNPQ---ANRYNA------------GFSDPERHAFSALLQEG-FIDT 185
Query: 146 YRFLHKEKDMDCGFSWSGNPIGKYRGKRM--RIDYFIVSEELKDRIIACEMQGHGIELEG 203
YR + E+ ++W + IG+ R + + RIDYF+ S+ L+D + + H
Sbjct: 186 YRHFYPEQKE--AYTW-WSYIGQARERNVGWRIDYFLASQNLQDTLKNAHIYTH------ 236
Query: 204 FYGSDHCPVSLEL 216
+GSDHCPV LEL
Sbjct: 237 IFGSDHCPVGLEL 249
>gi|218283512|ref|ZP_03489502.1| hypothetical protein EUBIFOR_02092 [Eubacterium biforme DSM 3989]
gi|218215780|gb|EEC89318.1| hypothetical protein EUBIFOR_02092 [Eubacterium biforme DSM 3989]
Length = 249
Score = 98.6 bits (244), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 65/215 (30%), Positives = 107/215 (49%), Gaps = 40/215 (18%)
Query: 10 VCLCNNSSV-FHFLLSALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWD 68
+ LC + + ++ +++ +GR+I E+ FYL+ Y P +G + R +WD
Sbjct: 67 MVLCKKKPLSIKYGINVPEFDDEGRIITLEYPEFYLVTVYTPTSG--DGLMRLDYRLEWD 124
Query: 69 KRIQEFVLQCSGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIA 128
+ + L+ KP++ CGD NV++ EIDV +P+ G GF+
Sbjct: 125 EAFGNY-LKSLDKPVMACGDFNVANNEIDVPYPDMIR---------------GTAGFSDE 168
Query: 129 ERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKR------MRIDYFIVS 182
ER F L L+D YR L+ E +SW YRG+ MR+DY++VS
Sbjct: 169 ERDSFKENLL-SNLVDTYRVLNPET---IQYSW-----WSYRGQARENNIGMRLDYWLVS 219
Query: 183 EELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 217
+LKD+I+ ++ L+ YGSDHCP+ L+++
Sbjct: 220 NDLKDKIVDSKI------LDDIYGSDHCPIMLDIN 248
>gi|182626631|ref|ZP_02954375.1| exodeoxyribonuclease III [Clostridium perfringens D str. JGS1721]
gi|422345838|ref|ZP_16426752.1| exodeoxyribonuclease III (xth) [Clostridium perfringens WAL-14572]
gi|177908025|gb|EDT70604.1| exodeoxyribonuclease III [Clostridium perfringens D str. JGS1721]
gi|373227503|gb|EHP49817.1| exodeoxyribonuclease III (xth) [Clostridium perfringens WAL-14572]
Length = 250
Score = 98.6 bits (244), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 63/189 (33%), Positives = 98/189 (51%), Gaps = 28/189 (14%)
Query: 28 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGKP-LIWC 86
++ +GRVI EFE F+++ Y PN+ + E + R +W+ + ++L+ S K ++ C
Sbjct: 85 HDKEGRVITLEFEDFFMVTVYTPNS--QSELARLEYRMEWEDDFRNYLLELSSKKGVVVC 142
Query: 87 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 146
GDLNV+H+EID+ +P K + GFT ER +F +L G ID +
Sbjct: 143 GDLNVAHKEIDLKNP---------------KTNRKNAGFTDEERDKFSTLLSSG-FIDTF 186
Query: 147 RFLHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 205
R+ + D++ +S WS + RIDYF+VS L+DRI + +
Sbjct: 187 RYFN--PDLEGVYSWWSYRFNARKNNAGWRIDYFLVSNNLEDRIKEASIDTEIL------ 238
Query: 206 GSDHCPVSL 214
GSDHCPV L
Sbjct: 239 GSDHCPVKL 247
>gi|420434804|ref|ZP_14933804.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-27]
gi|420503423|ref|ZP_15001957.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-41]
gi|420505338|ref|ZP_15003854.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-74]
gi|393052572|gb|EJB53518.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-27]
gi|393116870|gb|EJC17374.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-74]
gi|393149519|gb|EJC49829.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-41]
Length = 250
Score = 98.6 bits (244), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 63/191 (32%), Positives = 97/191 (50%), Gaps = 26/191 (13%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIW 85
+++ +GRV+ EFE+FYL+N Y PN+ ++ + R W+ ++F+ KP+I
Sbjct: 84 EHDKEGRVVTCEFESFYLVNVYTPNS--QQALSRLSYRMSWEVEFKKFLKALELKKPVIV 141
Query: 86 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 145
CGDLNV+H EID+ +P K + GF+ ER +F +L G ID
Sbjct: 142 CGDLNVAHNEIDLENP---------------KTNRKNAGFSDEERGKFSELLNAG-FIDT 185
Query: 146 YRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 205
+R+ + K+ + WS + + RIDYF+ S LK R+ + +
Sbjct: 186 FRYFYPNKEKAYTW-WSYMQQARDKDIGWRIDYFLCSNPLKTRL------KDALIYKDIL 238
Query: 206 GSDHCPVSLEL 216
GSDHCPV LEL
Sbjct: 239 GSDHCPVGLEL 249
>gi|224137778|ref|XP_002322649.1| predicted protein [Populus trichocarpa]
gi|222867279|gb|EEF04410.1| predicted protein [Populus trichocarpa]
Length = 428
Score = 98.6 bits (244), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 64/191 (33%), Positives = 100/191 (52%), Gaps = 27/191 (14%)
Query: 28 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWC 86
++ +GRV+ AEF++FYL+NTY PN+G + S+ R +WD + ++ + KP+I
Sbjct: 261 HDSEGRVVTAEFDSFYLVNTYVPNSGDGLKRLSY-RITQWDPSLSNYMKELEKSKPVILT 319
Query: 87 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 146
GDLN +H+EID+ +P A K + GFT ER+ FG+ L+D +
Sbjct: 320 GDLNCAHQEIDIFNP---AGNKRSA------------GFTEEERQSFGSNFLSKGLVDTF 364
Query: 147 RFLHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 205
R H G++ W G+ K R+DYF+VSE + D++ + +
Sbjct: 365 RKQHPNV---VGYTYWGYRHGGRKTNKGWRLDYFLVSESIADKVHDSYI------VPDVN 415
Query: 206 GSDHCPVSLEL 216
GSDHCP+ L L
Sbjct: 416 GSDHCPIGLVL 426
>gi|385229195|ref|YP_005789128.1| exodeoxyribonuclease III [Helicobacter pylori Puno120]
gi|344335633|gb|AEN16077.1| exodeoxyribonuclease III [Helicobacter pylori Puno120]
Length = 250
Score = 98.6 bits (244), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 63/191 (32%), Positives = 97/191 (50%), Gaps = 26/191 (13%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIW 85
+++ +GR+I EFE+FYL+N Y PN+ ++ + R W+ ++F+ KP+I
Sbjct: 84 EHDKEGRIITCEFESFYLVNVYVPNS--QQALSRLSYRMSWEVEFRKFLKALELKKPVIV 141
Query: 86 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 145
CGDLNV+H EID+ +P K + GF+ ER +F +L G ID
Sbjct: 142 CGDLNVAHNEIDLENP---------------KTNRKNAGFSDEERGKFNELLNAG-FIDT 185
Query: 146 YRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 205
+R+ + K+ + WS + + RIDYF+ S LK R+ + +
Sbjct: 186 FRYFYPNKEKAYTW-WSYMQQARDKNIGWRIDYFLCSNPLKTRL------KDALIYKDIL 238
Query: 206 GSDHCPVSLEL 216
GSDHCPV LEL
Sbjct: 239 GSDHCPVGLEL 249
>gi|385227690|ref|YP_005787614.1| exodeoxyribonuclease III [Helicobacter pylori SNT49]
gi|344332603|gb|AEN17633.1| exodeoxyribonuclease III [Helicobacter pylori SNT49]
Length = 250
Score = 98.6 bits (244), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 63/191 (32%), Positives = 97/191 (50%), Gaps = 26/191 (13%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIW 85
+++ +GRV+ EFE+FYL+N Y PN+ ++ + R W+ ++F+ KP+I
Sbjct: 84 EHDKEGRVVTCEFESFYLVNVYTPNS--QQALSRLSYRMSWEVEFKKFLKALELKKPVIV 141
Query: 86 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 145
CGDLNV+H EID+ +P K + GF+ ER +F +L G ID
Sbjct: 142 CGDLNVAHNEIDLENP---------------KTNRKNAGFSDEERGKFNELLNAG-FIDT 185
Query: 146 YRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 205
+R+ + K+ + WS + + RIDYF+ S LK R+ + +
Sbjct: 186 FRYFYPNKEKAYTW-WSYMQQARDKDIGWRIDYFLCSNPLKTRL------KDALIYKDIL 238
Query: 206 GSDHCPVSLEL 216
GSDHCPV LEL
Sbjct: 239 GSDHCPVGLEL 249
>gi|420419486|ref|ZP_14918576.1| exodeoxyribonuclease III [Helicobacter pylori NQ4076]
gi|393031392|gb|EJB32464.1| exodeoxyribonuclease III [Helicobacter pylori NQ4076]
Length = 250
Score = 98.6 bits (244), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 63/191 (32%), Positives = 97/191 (50%), Gaps = 26/191 (13%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIW 85
+++ +GRV+ EFE+FYL+N Y PN+ ++ + R W+ ++F+ KP+I
Sbjct: 84 EHDKEGRVVTCEFESFYLVNVYTPNS--QQALSRLSYRMSWEVEFKKFLKALELKKPVIV 141
Query: 86 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 145
CGDLNV+H EID+ +P K + GF+ ER +F +L G ID
Sbjct: 142 CGDLNVAHNEIDLENP---------------KTNRKNAGFSDEERGKFSELLNAG-FIDT 185
Query: 146 YRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 205
+R+ + K+ + WS + + RIDYF+ S LK R+ + +
Sbjct: 186 FRYFYPNKEKAYTW-WSYMQQARDKDIGWRIDYFLCSNPLKTRL------KDALIYKDIL 238
Query: 206 GSDHCPVSLEL 216
GSDHCPV LEL
Sbjct: 239 GSDHCPVGLEL 249
>gi|385230800|ref|YP_005790716.1| exodeoxyribonuclease III [Helicobacter pylori Puno135]
gi|344337238|gb|AEN19199.1| exodeoxyribonuclease III [Helicobacter pylori Puno135]
Length = 250
Score = 98.6 bits (244), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 63/191 (32%), Positives = 97/191 (50%), Gaps = 26/191 (13%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIW 85
+++ +GRV+ EFE+FYL+N Y PN+ ++ + R W+ ++F+ KP+I
Sbjct: 84 EHDKEGRVVTCEFESFYLVNVYVPNS--QQALSRLSYRMSWEVEFRKFLKALELKKPVIV 141
Query: 86 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 145
CGDLNV+H EID+ +P K + GF+ ER +F +L G ID
Sbjct: 142 CGDLNVAHNEIDLENP---------------KTNRKNAGFSDEERGKFNELLNAG-FIDT 185
Query: 146 YRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 205
+R+ + K+ + WS + + RIDYF+ S LK R+ + +
Sbjct: 186 FRYFYPNKEKAYTW-WSYMQQARDKNIGWRIDYFLCSNPLKTRL------KDALIYKDIL 238
Query: 206 GSDHCPVSLEL 216
GSDHCPV LEL
Sbjct: 239 GSDHCPVGLEL 249
>gi|420437930|ref|ZP_14936910.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-28]
gi|393050857|gb|EJB51811.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-28]
Length = 243
Score = 98.6 bits (244), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 64/191 (33%), Positives = 97/191 (50%), Gaps = 26/191 (13%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIW 85
+++ +GRVI EFE+FYL+N Y PN+ ++ R W+ ++F+ KP+I
Sbjct: 77 EHDKEGRVITCEFESFYLVNVYTPNS--QQALFRLSYRMSWEVEFKKFLKALELKKPVIV 134
Query: 86 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 145
CGDLNV+H EID+ +P K + GF+ ER++F +L G ID
Sbjct: 135 CGDLNVAHNEIDLENP---------------KTNRKNAGFSDEEREKFSELLNAG-FIDT 178
Query: 146 YRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 205
+R+ + K+ + WS + + RIDYF+ S LK R+ + +
Sbjct: 179 FRYFYPNKEKAYTW-WSYMQQARDKDIGWRIDYFLCSNPLKTRL------KDALIYKDIL 231
Query: 206 GSDHCPVSLEL 216
GSDHCPV LEL
Sbjct: 232 GSDHCPVGLEL 242
>gi|421893824|ref|ZP_16324317.1| exodeoxyribonuclease III [Pediococcus pentosaceus IE-3]
gi|385273309|emb|CCG89689.1| exodeoxyribonuclease III [Pediococcus pentosaceus IE-3]
Length = 251
Score = 98.6 bits (244), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 62/195 (31%), Positives = 98/195 (50%), Gaps = 26/195 (13%)
Query: 23 LSALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-K 81
L K++ +GRVI EFE FY++ Y PN+ + + + R WD + ++ Q + K
Sbjct: 80 LGIEKHDQEGRVITLEFEKFYVITCYTPNS--QPKLKRLEYRMAWDDAFRAYIDQLNQHK 137
Query: 82 PLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGR 141
P+I+CGDLNV+H+EID+ + +K + GFT ER +F +L G
Sbjct: 138 PVIFCGDLNVAHQEIDLKN---------------DKTNHKNAGFTDEERNKFTQLLNSG- 181
Query: 142 LIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIEL 201
D YR+ + K+ + WS + RIDYF+ S+ L ++ ++
Sbjct: 182 FTDTYRYFYPSKEGVYSW-WSYRFNARANNAGWRIDYFVSSKVLDQKLTDAQIHTE---- 236
Query: 202 EGFYGSDHCPVSLEL 216
+GSDHCPV L+L
Sbjct: 237 --IFGSDHCPVELDL 249
>gi|226228755|ref|YP_002762861.1| exodeoxyribonuclease III [Gemmatimonas aurantiaca T-27]
gi|226091946|dbj|BAH40391.1| exodeoxyribonuclease III [Gemmatimonas aurantiaca T-27]
Length = 265
Score = 98.6 bits (244), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 67/195 (34%), Positives = 99/195 (50%), Gaps = 36/195 (18%)
Query: 29 EPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQ-RRRKWDKRIQEFVLQCSG----KPL 83
E +GRVI AEFE F+++ Y PN K++ + R + WD F+ C KP+
Sbjct: 100 ETEGRVITAEFEKFFVVTVYTPNA--KDDLSRLPLRSQHWDA---AFLAHCKALEMKKPV 154
Query: 84 IWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLI 143
++CGDLNV+H E+D+++P+ PN+ G+ GFT ER+ F + L G +
Sbjct: 155 VFCGDLNVAHTELDLANPK------------PNR---GRKGFTDEERQGFQSFLDAG-FV 198
Query: 144 DAYRFLHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELE 202
D R H+ + +S WS + R RIDY +VS L+ + E+
Sbjct: 199 DTLRMFHQG---NGHYSWWSHFANSRARNVGWRIDYVLVSAALQKSVATAEIHA------ 249
Query: 203 GFYGSDHCPVSLELS 217
GSDHCPVS+ LS
Sbjct: 250 DVMGSDHCPVSVTLS 264
>gi|395849480|ref|XP_003797352.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase [Otolemur
garnettii]
Length = 318
Score = 98.6 bits (244), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 63/191 (32%), Positives = 103/191 (53%), Gaps = 25/191 (13%)
Query: 28 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQ-CSGKPLIWC 86
++ +GRVI+AEF+ F L+ Y PN G + R++WD+ ++F+ S KPL+ C
Sbjct: 151 HDQEGRVIVAEFDKFVLVTAYVPNAG--RGLVRLEYRQRWDEAFRKFLKGLTSQKPLVLC 208
Query: 87 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 146
GDLNV+HEEID+ +P+ NK++ GFT ER+ FG +L+ L D++
Sbjct: 209 GDLNVAHEEIDLRNPKG------------NKKN---AGFTPQERQGFGELLQAVPLADSF 253
Query: 147 RFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYG 206
R L+ F W+ + + R+DYF++S L + +++ + G
Sbjct: 254 RHLYPNTAYAYTF-WTYMMNARAKNVGWRLDYFLLSHSLLPALCDSKIRSKAL------G 306
Query: 207 SDHCPVSLELS 217
SDHCP++L L+
Sbjct: 307 SDHCPITLYLA 317
>gi|294781992|ref|ZP_06747324.1| exodeoxyribonuclease III [Fusobacterium sp. 1_1_41FAA]
gi|340754328|ref|ZP_08691085.1| exodeoxyribonuclease [Fusobacterium sp. 2_1_31]
gi|229423850|gb|EEO38897.1| exodeoxyribonuclease [Fusobacterium sp. 2_1_31]
gi|294481803|gb|EFG29572.1| exodeoxyribonuclease III [Fusobacterium sp. 1_1_41FAA]
Length = 253
Score = 98.6 bits (244), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 64/196 (32%), Positives = 100/196 (51%), Gaps = 28/196 (14%)
Query: 23 LSALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGK 81
L +++ +GRVI EFE FY++ Y PN+ K+E R W+ ++++ K
Sbjct: 80 LGIEEHDKEGRVITLEFEKFYMITVYTPNS--KDELLRLDYRMVWEDEFRKYLKNLEKKK 137
Query: 82 PLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGR 141
P++ CGDLNV+H+EID+ +P K + GFT ER +F +L+ G
Sbjct: 138 PVVVCGDLNVAHKEIDLKNP---------------KTNRRNAGFTDEERGKFTELLESG- 181
Query: 142 LIDAYRFLHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIE 200
ID +R+ + D++ +S WS + RIDYF+VS+ L+ ++ E+
Sbjct: 182 FIDTFRYFY--PDLEHAYSWWSYRANARKNNTGWRIDYFVVSKALEKYLVDAEIHAQT-- 237
Query: 201 LEGFYGSDHCPVSLEL 216
GSDHCPV L L
Sbjct: 238 ----EGSDHCPVVLFL 249
>gi|336435960|ref|ZP_08615673.1| exodeoxyribonuclease [Lachnospiraceae bacterium 1_4_56FAA]
gi|336008000|gb|EGN38019.1| exodeoxyribonuclease [Lachnospiraceae bacterium 1_4_56FAA]
Length = 250
Score = 98.6 bits (244), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 63/191 (32%), Positives = 97/191 (50%), Gaps = 26/191 (13%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIW 85
+++ +GRVI EFE FY + Y PN+ + E R +W+ + ++ KP++
Sbjct: 84 EHDQEGRVITCEFEDFYFVTVYTPNS--QNELKRLDYRMRWEDDFRAYLKALDEKKPVVV 141
Query: 86 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 145
GD+NV+H EID+ +P K + GFT ER +F +L G ID
Sbjct: 142 TGDMNVAHAEIDLKNP---------------KSNRQNAGFTDEERGKFTELLDAG-FIDT 185
Query: 146 YRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 205
+R+ + +++ + WS + + RIDYF VSE +KDR+ ++ L Y
Sbjct: 186 FRYFYPDQEGIYSW-WSYRFKAREKNAGWRIDYFCVSERMKDRLSDAKI------LTDIY 238
Query: 206 GSDHCPVSLEL 216
GSDHCPV LEL
Sbjct: 239 GSDHCPVCLEL 249
>gi|293376523|ref|ZP_06622751.1| exodeoxyribonuclease III [Turicibacter sanguinis PC909]
gi|292644749|gb|EFF62831.1| exodeoxyribonuclease III [Turicibacter sanguinis PC909]
Length = 251
Score = 98.6 bits (244), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 62/197 (31%), Positives = 99/197 (50%), Gaps = 26/197 (13%)
Query: 23 LSALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-K 81
L+ +++ +GRVI E+ FYL+ Y PN+ + E R W++ + +++ K
Sbjct: 80 LNIAEHDQEGRVITLEYNDFYLVTVYTPNS--QNELARLDYRLTWEEAFRNYLIGLDVLK 137
Query: 82 PLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGR 141
P+I CGDLNV+H++ID+ +P K + GFTI ER +L G
Sbjct: 138 PVIVCGDLNVAHQQIDLKNP---------------KTNTKNAGFTIEERNEMTKLLNSG- 181
Query: 142 LIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIEL 201
ID +R+ + K+ +C WS + + RIDYFI S+ L+ R+ + +
Sbjct: 182 FIDTFRYFYPTKE-NCYSWWSYRAGARAKNVGWRIDYFITSKALESRLEDARIYPDVL-- 238
Query: 202 EGFYGSDHCPVSLELSE 218
GSDHCPV L+L +
Sbjct: 239 ----GSDHCPVGLQLKK 251
>gi|254168985|ref|ZP_04875824.1| exodeoxyribonuclease III [Aciduliprofundum boonei T469]
gi|197622091|gb|EDY34667.1| exodeoxyribonuclease III [Aciduliprofundum boonei T469]
Length = 255
Score = 98.6 bits (244), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 65/191 (34%), Positives = 100/191 (52%), Gaps = 27/191 (14%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIW 85
K++ +GRVI AE+E FYL+N Y PN+ + + ++DK I ++ + KP+I
Sbjct: 89 KFDSEGRVITAEYEKFYLVNAYFPNS--QHGLTRLDFKIEFDKLIHSYLNELRKKKPVIL 146
Query: 86 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 145
CGD NV+H+EID+++P K++ GFT ER L++G ID
Sbjct: 147 CGDFNVAHKEIDLANP---------------KQNVKNAGFTPQERAWMDKFLQDG-YIDT 190
Query: 146 YRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 205
+R KE W+ + R R+DYF+VSEELKD++ + + L Y
Sbjct: 191 FRMFTKEGGHYTW--WTYRFKARERNIGWRVDYFVVSEELKDKVKSSWI------LSEVY 242
Query: 206 GSDHCPVSLEL 216
GSDH P+++ L
Sbjct: 243 GSDHAPIAMVL 253
>gi|410456343|ref|ZP_11310205.1| exodeoxyribonuclease III [Bacillus bataviensis LMG 21833]
gi|409928167|gb|EKN65287.1| exodeoxyribonuclease III [Bacillus bataviensis LMG 21833]
Length = 250
Score = 98.6 bits (244), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 64/191 (33%), Positives = 107/191 (56%), Gaps = 30/191 (15%)
Query: 29 EPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCG 87
E +GR++ EF+ F+L+N Y PN+ + + R +W+ RI E + + KP+I CG
Sbjct: 86 EEEGRILTLEFDDFFLVNIYTPNS--QRDLARIGYRLEWESRILEHLKELDKLKPVILCG 143
Query: 88 DLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYR 147
DLNV+H+EID+ + +K + G GFT ER + ++L G +D+YR
Sbjct: 144 DLNVAHQEIDLRN---------------SKSNVGNSGFTDEERGKMTSLLSAG-FVDSYR 187
Query: 148 FLHKEKDMDCGFSWSGNPIGKYRGKRM--RIDYFIVSEELKDRIIACEMQGHGIELEGFY 205
H D + ++W + + K R + + RIDYFIVSE+L++ + + ++ + +
Sbjct: 188 --HFYPDQEGAYTW-WSYMMKVRERNIGWRIDYFIVSEKLRENLKSADIHCNVM------ 238
Query: 206 GSDHCPVSLEL 216
GSDHCP+ LE+
Sbjct: 239 GSDHCPIVLEV 249
>gi|420154891|ref|ZP_14661764.1| exodeoxyribonuclease III [Clostridium sp. MSTE9]
gi|394760027|gb|EJF42663.1| exodeoxyribonuclease III [Clostridium sp. MSTE9]
Length = 252
Score = 98.6 bits (244), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 67/193 (34%), Positives = 99/193 (51%), Gaps = 36/193 (18%)
Query: 31 DGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDL 89
+GR I EFE+FYL+N Y PN+ + E R +W+ +E+V Q KP+I CGDL
Sbjct: 88 EGRAITLEFESFYLVNVYTPNS--QRELVRLPYRMEWENAFREYVTQLDEKKPVIICGDL 145
Query: 90 NVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFL 149
NV+H+EID+ + K + G GF+ ER + +L G +D++R L
Sbjct: 146 NVAHQEIDLKNA---------------KSNIGNAGFSYEERGKLTELLASG-FLDSFREL 189
Query: 150 HKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELK----DRIIACEMQGHGIELEGF 204
+ D+ ++ WS + RIDYF++SE L+ D +I E+Q
Sbjct: 190 Y--PDLTGAYTWWSYMFKARQNNAGWRIDYFLISERLREKLSDSLIYSEVQ--------- 238
Query: 205 YGSDHCPVSLELS 217
GSDHCPV L L+
Sbjct: 239 -GSDHCPVGLILT 250
>gi|393199117|ref|YP_006460959.1| exonuclease III [Solibacillus silvestris StLB046]
gi|327438448|dbj|BAK14813.1| exonuclease III [Solibacillus silvestris StLB046]
Length = 252
Score = 98.6 bits (244), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 61/189 (32%), Positives = 99/189 (52%), Gaps = 30/189 (15%)
Query: 31 DGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIWCGDL 89
+GR++ E+E FYL+NTY PN K + + R W+ R++ ++ + K P+I+CGDL
Sbjct: 88 EGRILTLEYENFYLVNTYTPNA--KRDLTRLEERLLWEDRMRIYLKELDAKKPVIYCGDL 145
Query: 90 NVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFL 149
NV+H E+D+ + K + G GFT ER + +L G D +R
Sbjct: 146 NVAHSELDIKNV---------------KSNIGNSGFTYEERGKMTDLLTSG-FTDTFRHF 189
Query: 150 HKEKDMDCGFSWSGNPIGKYRGKRM--RIDYFIVSEELKDRIIACEMQGHGIELEGFYGS 207
H D+ F+W + + K R + + RIDYFI+S+ L +++ + + GS
Sbjct: 190 H--PDVTDHFTW-WSYMAKVRERNIGWRIDYFIISDRLVEKVEEASIHSEIL------GS 240
Query: 208 DHCPVSLEL 216
DHCP+ L+L
Sbjct: 241 DHCPIVLKL 249
>gi|319935137|ref|ZP_08009577.1| exodeoxyribonuclease III [Coprobacillus sp. 29_1]
gi|319809962|gb|EFW06345.1| exodeoxyribonuclease III [Coprobacillus sp. 29_1]
Length = 252
Score = 98.6 bits (244), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 65/191 (34%), Positives = 98/191 (51%), Gaps = 27/191 (14%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIW 85
+++ +GR+I EFE FY + Y PN+ K E R+ W+ ++ V + KP++
Sbjct: 84 EHDQEGRLITLEFEKFYFVAVYTPNS--KRELERLDYRQVWEDAFRQHVQKLKESKPVVL 141
Query: 86 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 145
CGDLNV+H EID+ + +K + GFT ER +F +L G ID
Sbjct: 142 CGDLNVAHNEIDLKN---------------DKTNHKNAGFTDQERAKFSELLNSG-FIDT 185
Query: 146 YRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 205
+R+ + E +M +S+ K G RIDYF+VSE+LK+ I + +
Sbjct: 186 FRYKYPETEMYSWWSYMFKAREKNAG--WRIDYFVVSEDLKENIKDAYIYTEIM------ 237
Query: 206 GSDHCPVSLEL 216
GSDHCPV +EL
Sbjct: 238 GSDHCPVGVEL 248
>gi|325269387|ref|ZP_08136004.1| exodeoxyribonuclease III [Prevotella multiformis DSM 16608]
gi|324988308|gb|EGC20274.1| exodeoxyribonuclease III [Prevotella multiformis DSM 16608]
Length = 249
Score = 98.6 bits (244), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 63/192 (32%), Positives = 99/192 (51%), Gaps = 29/192 (15%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIW 85
+++ +GRVI E + FYL+ Y PN+ ++ R KW+K Q ++ KP++
Sbjct: 84 EHDHEGRVITLEMDDFYLVTVYTPNS--QDGLRRLDYRMKWEKDFQNYLHWLDEKKPVVV 141
Query: 86 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 145
CGD+NV+HEEID+ +P K + GFT ER++ +L G ID
Sbjct: 142 CGDMNVAHEEIDIKNP---------------KTNRRNAGFTDEEREKMTQLLDSG-FIDT 185
Query: 146 YRFLHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGF 204
+R L+ E+ +S WS + R RIDYF++SE L+DR+ ++
Sbjct: 186 FRSLYPEQ---VTYSWWSYRFRARERNTGWRIDYFLISERLRDRLEDAKIHTE------I 236
Query: 205 YGSDHCPVSLEL 216
GSDHCP+ ++L
Sbjct: 237 MGSDHCPIEVDL 248
>gi|384888368|ref|YP_005762879.1| exodeoxyribonuclease [Helicobacter pylori 52]
gi|261840198|gb|ACX99963.1| exodeoxyribonuclease [Helicobacter pylori 52]
Length = 250
Score = 98.2 bits (243), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 63/191 (32%), Positives = 97/191 (50%), Gaps = 26/191 (13%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIW 85
+++ +GRV+ EFE+FYL+N Y PN+ ++ + R W+ ++F+ KP+I
Sbjct: 84 EHDKEGRVVTCEFESFYLVNVYTPNS--QQALSRLSYRMSWEVEFRKFLKALELKKPVIV 141
Query: 86 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 145
CGDLNV+H EID+ +P K + GF+ ER +F +L G ID
Sbjct: 142 CGDLNVAHNEIDLENP---------------KTNRKNAGFSDEERGKFNELLNAG-FIDT 185
Query: 146 YRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 205
+R+ + K+ + WS + + RIDYF+ S LK R+ + +
Sbjct: 186 FRYFYPNKEKAYTW-WSYMQQARDKDIGWRIDYFLCSNPLKTRL------KDALIYKDIL 238
Query: 206 GSDHCPVSLEL 216
GSDHCPV LEL
Sbjct: 239 GSDHCPVGLEL 249
>gi|254166764|ref|ZP_04873618.1| exodeoxyribonuclease III [Aciduliprofundum boonei T469]
gi|289596498|ref|YP_003483194.1| exodeoxyribonuclease III [Aciduliprofundum boonei T469]
gi|197624374|gb|EDY36935.1| exodeoxyribonuclease III [Aciduliprofundum boonei T469]
gi|289534285|gb|ADD08632.1| exodeoxyribonuclease III [Aciduliprofundum boonei T469]
Length = 255
Score = 98.2 bits (243), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 65/191 (34%), Positives = 100/191 (52%), Gaps = 27/191 (14%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIW 85
K++ +GRVI AE+E FYL+N Y PN+ + + ++DK I ++ + KP+I
Sbjct: 89 KFDSEGRVITAEYEKFYLVNAYFPNS--QHGLTRLDFKIEFDKLIHSYLNELRKKKPVIL 146
Query: 86 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 145
CGD NV+H+EID+++P K++ GFT ER L++G ID
Sbjct: 147 CGDFNVAHKEIDLANP---------------KQNVKNAGFTPQERAWMDEFLQDG-YIDT 190
Query: 146 YRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 205
+R KE W+ + R R+DYF+VSEELKD++ + + L Y
Sbjct: 191 FRMFTKEGGHYTW--WTYRFKARERNIGWRVDYFVVSEELKDKVKSSWI------LSEVY 242
Query: 206 GSDHCPVSLEL 216
GSDH P+++ L
Sbjct: 243 GSDHAPIAMVL 253
>gi|18310156|ref|NP_562090.1| exodeoxyribonuclease III [Clostridium perfringens str. 13]
gi|110802988|ref|YP_698514.1| exodeoxyribonuclease III [Clostridium perfringens SM101]
gi|18144835|dbj|BAB80880.1| 3'-exo-deoxyribonuclease [Clostridium perfringens str. 13]
gi|110683489|gb|ABG86859.1| exodeoxyribonuclease III [Clostridium perfringens SM101]
Length = 250
Score = 98.2 bits (243), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 63/189 (33%), Positives = 98/189 (51%), Gaps = 28/189 (14%)
Query: 28 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGKP-LIWC 86
++ +GRVI EFE F+++ Y PN+ + E + R +W+ + ++L+ S K ++ C
Sbjct: 85 HDKEGRVITLEFEDFFMVTVYTPNS--QSELARLEYRMEWEDDFRNYLLELSSKKGVVVC 142
Query: 87 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 146
GDLNV+H+EID+ +P K + GFT ER +F +L G ID +
Sbjct: 143 GDLNVAHKEIDLKNP---------------KTNRKNAGFTDEERDKFSTLLSSG-FIDTF 186
Query: 147 RFLHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 205
R+ + D++ +S WS + RIDYF+VS L+DRI + +
Sbjct: 187 RYFN--PDLEGIYSWWSYRFNARKNNAGWRIDYFLVSNNLEDRIKEASIDTEIL------ 238
Query: 206 GSDHCPVSL 214
GSDHCPV L
Sbjct: 239 GSDHCPVKL 247
>gi|167759302|ref|ZP_02431429.1| hypothetical protein CLOSCI_01649 [Clostridium scindens ATCC 35704]
gi|336422208|ref|ZP_08602360.1| exodeoxyribonuclease [Lachnospiraceae bacterium 5_1_57FAA]
gi|167663176|gb|EDS07306.1| exodeoxyribonuclease III [Clostridium scindens ATCC 35704]
gi|336009118|gb|EGN39116.1| exodeoxyribonuclease [Lachnospiraceae bacterium 5_1_57FAA]
Length = 250
Score = 98.2 bits (243), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 62/192 (32%), Positives = 100/192 (52%), Gaps = 28/192 (14%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIW 85
+++ +GRVI EFE +Y + Y PN+ + E R +W+ ++ + KP+I+
Sbjct: 84 EHDQEGRVITLEFEDYYFITVYTPNS--QNELARLPYRMQWEDDFLAYLKKLEEAKPVIF 141
Query: 86 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 145
CGDLNV+H+EID+ +P K + GFT ER +F +++ G ID
Sbjct: 142 CGDLNVAHKEIDLKNP---------------KTNRKNAGFTDEERAKFTSLVDAG-FIDT 185
Query: 146 YRFLHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGF 204
+R+ + D +S WS + + RIDYF VSE L++R++ ++ L
Sbjct: 186 FRYFY--PDAQGIYSWWSYRFSARAKNAGWRIDYFCVSESLEERLVDAKI------LTDV 237
Query: 205 YGSDHCPVSLEL 216
GSDHCP+ LE+
Sbjct: 238 MGSDHCPIVLEM 249
>gi|333984917|ref|YP_004514127.1| exodeoxyribonuclease III [Methylomonas methanica MC09]
gi|333808958|gb|AEG01628.1| exodeoxyribonuclease III Xth [Methylomonas methanica MC09]
Length = 254
Score = 98.2 bits (243), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 67/195 (34%), Positives = 98/195 (50%), Gaps = 30/195 (15%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIW 85
+++ +GRV++AEFE+FYLLN Y PN+G + R+ WD + ++ Q KP+I
Sbjct: 87 EHDQEGRVLVAEFESFYLLNVYVPNSG--DGLARLDYRQTWDAALLAYLQQLQNQKPVIA 144
Query: 86 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 145
CGD NV+H+ ID++ P+ A N G+T E F + G ID+
Sbjct: 145 CGDFNVAHQAIDIARPK----ANYN----------KSAGYTQTEIDGFSRFTEAG-FIDS 189
Query: 146 YRFLHKEKDMDCGFSWSGNPIGKYRGKRM--RIDYFIVSEELKDRIIACEMQGHGIELEG 203
+R H E +SW G R K + RIDY + S+ L RI + L
Sbjct: 190 FRHFHPET---VAYSWWSYRAGA-RAKNIGWRIDYVLTSQALLPRIQDSFI------LPE 239
Query: 204 FYGSDHCPVSLELSE 218
GSDHCPV +++SE
Sbjct: 240 IMGSDHCPVGIQISE 254
>gi|113983|sp|P23196.2|APEX1_BOVIN RecName: Full=DNA-(apurinic or apyrimidinic site) lyase; AltName:
Full=APEX nuclease; Short=APEN; AltName:
Full=Apurinic-apyrimidinic endonuclease 1; Short=AP
endonuclease 1; AltName: Full=REF-1; AltName: Full=Redox
factor-1; Contains: RecName: Full=DNA-(apurinic or
apyrimidinic site) lyase, mitochondrial
gi|118|emb|CAA40014.1| BAP 1 [Bos taurus]
Length = 318
Score = 98.2 bits (243), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 61/192 (31%), Positives = 105/192 (54%), Gaps = 25/192 (13%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQ-CSGKPLIW 85
+++ +GRVI+AE++ F L+ Y PN G + R++WD+ ++F+ S KPL+
Sbjct: 150 EHDQEGRVIVAEYDAFVLVTAYVPNAG--RGLVRLEYRQRWDEAFRKFLKGLASRKPLVL 207
Query: 86 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 145
CGDLNV+HEEID+ +P+ NK++ GFT ER+ FG +L+ L D+
Sbjct: 208 CGDLNVAHEEIDLRNPKG------------NKKN---AGFTPQERQGFGELLQAVPLTDS 252
Query: 146 YRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 205
+R L+ F W+ + + R+DYF++S+ + + +++ +
Sbjct: 253 FRHLYPNTAYAYTF-WTYMMNARSKNVGWRLDYFLLSQSVLPALCDSKIRSKAL------ 305
Query: 206 GSDHCPVSLELS 217
GSDHCP++L L+
Sbjct: 306 GSDHCPITLYLA 317
>gi|304384068|ref|ZP_07366522.1| exodeoxyribonuclease III [Prevotella marshii DSM 16973]
gi|304334784|gb|EFM01060.1| exodeoxyribonuclease III [Prevotella marshii DSM 16973]
Length = 250
Score = 98.2 bits (243), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 62/191 (32%), Positives = 97/191 (50%), Gaps = 27/191 (14%)
Query: 28 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIWC 86
++ +GR+I E FYL+ Y PN+ ++ R +W++ +++ + K P+I C
Sbjct: 85 HDHEGRIITLEMPGFYLVTVYTPNS--QDGLKRLAYRMQWEEDFLQYIKKLDAKKPVIIC 142
Query: 87 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 146
GD+NV+HEEID+ +P K + GFT ER +F +L EG D +
Sbjct: 143 GDMNVAHEEIDIKNP---------------KTNRHNAGFTDEERNKFTTLLSEG-FTDTF 186
Query: 147 RFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYG 206
R+ + E+ +S+ K G RIDYF+VS LK +II ++ G
Sbjct: 187 RYKYPEQVRYSWWSYRFQARAKNAG--WRIDYFVVSNRLKPQIIDAKIH------TAILG 238
Query: 207 SDHCPVSLELS 217
SDHCPV +EL+
Sbjct: 239 SDHCPVEVELN 249
>gi|168209710|ref|ZP_02635335.1| exodeoxyribonuclease III [Clostridium perfringens B str. ATCC 3626]
gi|168217871|ref|ZP_02643496.1| exodeoxyribonuclease III [Clostridium perfringens NCTC 8239]
gi|170712212|gb|EDT24394.1| exodeoxyribonuclease III [Clostridium perfringens B str. ATCC 3626]
gi|182380111|gb|EDT77590.1| exodeoxyribonuclease III [Clostridium perfringens NCTC 8239]
Length = 250
Score = 98.2 bits (243), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 63/189 (33%), Positives = 98/189 (51%), Gaps = 28/189 (14%)
Query: 28 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGKP-LIWC 86
++ +GRVI EFE F+++ Y PN+ + E + R +W+ + ++L+ S K ++ C
Sbjct: 85 HDKEGRVITLEFEDFFMVTVYTPNS--QSELARLEYRMEWEDDFRNYLLELSSKKGVVVC 142
Query: 87 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 146
GDLNV+H+EID+ +P K + GFT ER +F +L G ID +
Sbjct: 143 GDLNVAHKEIDLKNP---------------KTNRKNAGFTDEERDKFSTLLSSG-FIDTF 186
Query: 147 RFLHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 205
R+ + D++ +S WS + RIDYF+VS L+DRI + +
Sbjct: 187 RYFN--PDIEGVYSWWSYRFNARKNNAGWRIDYFLVSNNLEDRIKEASIDTEIL------ 238
Query: 206 GSDHCPVSL 214
GSDHCPV L
Sbjct: 239 GSDHCPVKL 247
>gi|420473134|ref|ZP_14971815.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-18]
gi|393086638|gb|EJB87312.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-18]
Length = 250
Score = 98.2 bits (243), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 64/191 (33%), Positives = 97/191 (50%), Gaps = 26/191 (13%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIW 85
+++ +GRVI EFE FYL+N Y PN+ ++ + R W+ ++F+ KP+I
Sbjct: 84 EHDKEGRVITCEFELFYLVNVYTPNS--QQALSRLNYRMSWEVEFKKFLKALELKKPVIV 141
Query: 86 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 145
CGDLNV+H EID+ +P K + GF+ ER++F +L G ID
Sbjct: 142 CGDLNVAHNEIDLENP---------------KTNRKNAGFSDEEREKFSELLNAG-FIDT 185
Query: 146 YRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 205
+R+ + K+ + WS + + RIDYF+ S LK R+ + +
Sbjct: 186 FRYFYPNKEKAYTW-WSYMQQARDKDIGWRIDYFLCSNPLKMRL------KDALIYKDIL 238
Query: 206 GSDHCPVSLEL 216
GSDHCPV LEL
Sbjct: 239 GSDHCPVGLEL 249
>gi|373454216|ref|ZP_09546089.1| exodeoxyribonuclease III (xth) [Dialister succinatiphilus YIT
11850]
gi|371936051|gb|EHO63787.1| exodeoxyribonuclease III (xth) [Dialister succinatiphilus YIT
11850]
Length = 254
Score = 98.2 bits (243), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 67/191 (35%), Positives = 99/191 (51%), Gaps = 26/191 (13%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIW 85
+++ +GR+I A+F + YLL Y PN+ S+ R W+K ++E++ + + KP+I
Sbjct: 87 EHDQEGRLITADFGSHYLLCCYTPNSQRGLARLSY--RMTWEKAMKEYMTKLAAEKPVIL 144
Query: 86 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 145
CGDLNV+HE+ID+++P A+ N GFT ER R +L G D+
Sbjct: 145 CGDLNVAHEDIDIANP---ASNHKNA------------GFTDEERGRMTDLLAAG-FTDS 188
Query: 146 YRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 205
+R LH + + D WS + R RIDYF+VS KD I +
Sbjct: 189 FRHLHPD-EKDAYSWWSYFAKARERNVGWRIDYFLVSSVWKDHIKGASIHS------DIL 241
Query: 206 GSDHCPVSLEL 216
GSDHCPV L+L
Sbjct: 242 GSDHCPVELDL 252
>gi|363896773|ref|ZP_09323322.1| exodeoxyribonuclease [Oribacterium sp. ACB7]
gi|361960338|gb|EHL13587.1| exodeoxyribonuclease [Oribacterium sp. ACB7]
Length = 251
Score = 98.2 bits (243), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 62/191 (32%), Positives = 101/191 (52%), Gaps = 27/191 (14%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIW 85
+++ +GRVI AEF+ FYL+ Y PN+ + E R +++ ++L KP+++
Sbjct: 85 EHDQEGRVITAEFKDFYLITVYVPNS--QGELKRLPYRMEFEDAFLNYILNLEKKKPVVY 142
Query: 86 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 145
CGDLNV+HEEID+ +P+ + GF+ ER +F +L G L D+
Sbjct: 143 CGDLNVAHEEIDLKNPD---------------TNHLSAGFSDEERAKFSRVLDNGYL-DS 186
Query: 146 YRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 205
+R+ + EK+ WS + R RIDYF+VS++L+ ++ + + +
Sbjct: 187 FRYFYPEKEEYSW--WSYRTKARERNVGWRIDYFVVSKQLEKKLHSASIHTEVM------ 238
Query: 206 GSDHCPVSLEL 216
GSDHCPV L L
Sbjct: 239 GSDHCPVELIL 249
>gi|282858966|ref|ZP_06268104.1| exodeoxyribonuclease III [Prevotella bivia JCVIHMP010]
gi|424898885|ref|ZP_18322433.1| exodeoxyribonuclease III [Prevotella bivia DSM 20514]
gi|282588246|gb|EFB93413.1| exodeoxyribonuclease III [Prevotella bivia JCVIHMP010]
gi|388593595|gb|EIM33832.1| exodeoxyribonuclease III [Prevotella bivia DSM 20514]
Length = 249
Score = 98.2 bits (243), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 61/192 (31%), Positives = 99/192 (51%), Gaps = 29/192 (15%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIW 85
+++ +GRVI E + FYL+ Y PN+ ++E R +W+ Q ++ + KP+I
Sbjct: 84 EHDHEGRVITLEMDDFYLVTVYTPNS--QDELKRLAYRMQWETDFQAYLHKLDEHKPVIV 141
Query: 86 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 145
CGD+NV+HEEID+ +P K + GF+ ER++ +L G D
Sbjct: 142 CGDMNVAHEEIDLKNP---------------KTNHHNAGFSDEEREKMTILLNNG-FTDT 185
Query: 146 YRFLHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGF 204
+R+L+ E+ +S WS + + RIDYF++S L+DR+ ++
Sbjct: 186 FRYLYPEQ---VTYSWWSYRFKAREKNTGWRIDYFLISNRLRDRLKDAKIHTE------I 236
Query: 205 YGSDHCPVSLEL 216
+GSDHCPV L L
Sbjct: 237 FGSDHCPVELTL 248
>gi|262067405|ref|ZP_06027017.1| exodeoxyribonuclease III [Fusobacterium periodonticum ATCC 33693]
gi|291378968|gb|EFE86486.1| exodeoxyribonuclease III [Fusobacterium periodonticum ATCC 33693]
Length = 253
Score = 98.2 bits (243), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 64/196 (32%), Positives = 98/196 (50%), Gaps = 28/196 (14%)
Query: 23 LSALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGK 81
L +++ +GRVI EFE FY++ Y PN+ K+E R W+ ++++ K
Sbjct: 80 LGIEEHDKEGRVITLEFEKFYMITVYTPNS--KDELQRLDYRMVWEDEFRKYLKNLEKKK 137
Query: 82 PLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGR 141
P++ CGDLNV+H+EID+ +P K + GFT ER +F +L+ G
Sbjct: 138 PVVVCGDLNVAHKEIDLKNP---------------KTNRRNAGFTDEERGKFTELLESG- 181
Query: 142 LIDAYRFLHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIE 200
D +R+ + D++ +S WS + RIDYFIVS+ L ++ E+
Sbjct: 182 FTDTFRYFY--PDLEHAYSWWSYRANARKNNTGWRIDYFIVSKALDKYLVDAEIHAQT-- 237
Query: 201 LEGFYGSDHCPVSLEL 216
GSDHCPV L L
Sbjct: 238 ----EGSDHCPVVLFL 249
>gi|295099755|emb|CBK88844.1| exodeoxyribonuclease III [Eubacterium cylindroides T2-87]
Length = 249
Score = 97.8 bits (242), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 66/198 (33%), Positives = 103/198 (52%), Gaps = 29/198 (14%)
Query: 20 HFLLSALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS 79
H+ + +++ +GRVI EF+++Y++ Y PN+G + + R +WDK ++ Q
Sbjct: 78 HYGIDIPEHDTEGRVITLEFDSYYVVTVYTPNSG--DGLKRLEYRMEWDKAFSNYI-QSL 134
Query: 80 GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKE 139
KP++ GDLNV++EEID+ +P K + GFT ER F L
Sbjct: 135 DKPVLLTGDLNVANEEIDIKNP---------------KTNRRNAGFTDEERDSFKKNLL- 178
Query: 140 GRLIDAYRFLHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHG 198
L D+YR L+ +K +S WS + + RIDY++VSEEL ++ ++
Sbjct: 179 TILKDSYRTLYPDK---VEYSWWSYRFKAREKNAGWRIDYWLVSEELMPKVKDSKI---- 231
Query: 199 IELEGFYGSDHCPVSLEL 216
L YGSDHCPV LE+
Sbjct: 232 --LTDIYGSDHCPVQLEI 247
>gi|317497391|ref|ZP_07955713.1| exodeoxyribonuclease III [Lachnospiraceae bacterium 5_1_63FAA]
gi|316895311|gb|EFV17471.1| exodeoxyribonuclease III [Lachnospiraceae bacterium 5_1_63FAA]
Length = 250
Score = 97.8 bits (242), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 69/201 (34%), Positives = 103/201 (51%), Gaps = 27/201 (13%)
Query: 17 SVFHFLLSALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVL 76
SVF + L +++ +GRVI EF+ +Y + Y PN+ + E R KW++ ++
Sbjct: 75 SVF-YGLGIEEHDQEGRVITLEFKDYYFITVYTPNS--QSELARLSYRMKWEEDFLAYLK 131
Query: 77 QCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGA 135
+ KP+I+CGDLNV+ EEID+ +P K + GFT ER++
Sbjct: 132 KLEEKKPVIFCGDLNVAVEEIDLKNP---------------KTNRKNAGFTDEEREKMRT 176
Query: 136 ILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQ 195
IL G ID +R+L+ ++ + WS + RIDYFIVSE LKDRI ++
Sbjct: 177 ILNNG-FIDTFRYLYPDQTGIYSW-WSYRFNARKNNAGWRIDYFIVSECLKDRISDAKI- 233
Query: 196 GHGIELEGFYGSDHCPVSLEL 216
L GSDHCP+ L+
Sbjct: 234 -----LTDVMGSDHCPIELDF 249
>gi|303229843|ref|ZP_07316620.1| exodeoxyribonuclease III [Veillonella atypica ACS-134-V-Col7a]
gi|303231217|ref|ZP_07317955.1| exodeoxyribonuclease III [Veillonella atypica ACS-049-V-Sch6]
gi|302514124|gb|EFL56128.1| exodeoxyribonuclease III [Veillonella atypica ACS-049-V-Sch6]
gi|302515473|gb|EFL57438.1| exodeoxyribonuclease III [Veillonella atypica ACS-134-V-Col7a]
Length = 251
Score = 97.8 bits (242), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 64/193 (33%), Positives = 103/193 (53%), Gaps = 30/193 (15%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIW 85
+++ +GRVI AE++ FYL+ Y PN+ + E R W+ + ++L+ K P+I
Sbjct: 84 EHDQEGRVITAEYDNFYLVCCYTPNS--QRELARLDYRMTWEDAFRAYLLELDKKKPVIL 141
Query: 86 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 145
CGDLNV+H EID+ +P K + GF+ ER + +L+ G D
Sbjct: 142 CGDLNVAHNEIDLKNP---------------KTNRKNAGFSDEERAKMTELLESG-FTDT 185
Query: 146 YRFLHKEKDMDCGFSWSGNPIGKYRGKRM--RIDYFIVSEELKDRIIACEMQGHGIELEG 203
+R+L+ D +SW + +GK R + + RIDYFI S+ L D+I ++ +
Sbjct: 186 FRYLY--PDAVDEYSW-WSYMGKARDRNVGWRIDYFITSKRLDDKIKEAKIH------QQ 236
Query: 204 FYGSDHCPVSLEL 216
+GSDHCPV L++
Sbjct: 237 IFGSDHCPVELDI 249
>gi|227874120|ref|ZP_03992326.1| exodeoxyribonuclease III [Oribacterium sinus F0268]
gi|227840032|gb|EEJ50456.1| exodeoxyribonuclease III [Oribacterium sinus F0268]
Length = 254
Score = 97.8 bits (242), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 61/191 (31%), Positives = 102/191 (53%), Gaps = 26/191 (13%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIW 85
+++ +GRVI E+ FYL+ Y PN+ + E R K++ ++L KP+I+
Sbjct: 87 EHDQEGRVITLEYPEFYLITVYVPNS--QGELKRLPYRMKFEDAFLNYILTLEKKKPVIY 144
Query: 86 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 145
CGDLNV+HEEID+ +P+ + +N GF+ ER +F +L G L D+
Sbjct: 145 CGDLNVAHEEIDLKNPD---SNHMNA------------GFSDEERAKFSRVLDSGYL-DS 188
Query: 146 YRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 205
+R + K+ + + WS + R RIDYF+VS++L+ ++++ + +
Sbjct: 189 FRHFYPNKEEEYSW-WSYRTKARDRNVGWRIDYFVVSKQLEKKLLSASIH------QEVM 241
Query: 206 GSDHCPVSLEL 216
GSDHCPV + L
Sbjct: 242 GSDHCPVEITL 252
>gi|188528295|ref|YP_001910982.1| exodeoxyribonuclease III [Helicobacter pylori Shi470]
gi|188144535|gb|ACD48952.1| exodeoxyribonuclease [Helicobacter pylori Shi470]
Length = 250
Score = 97.8 bits (242), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 63/191 (32%), Positives = 96/191 (50%), Gaps = 26/191 (13%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIW 85
+++ +GRV+ EFE FYL+N Y PN+ ++ + R W+ ++F+ KP+I
Sbjct: 84 EHDKEGRVVTCEFELFYLVNVYVPNS--QQALSRLSYRMSWEVEFRKFLKALELKKPVIV 141
Query: 86 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 145
CGDLNV+H EID+ +P K + GF+ ER +F +L G ID
Sbjct: 142 CGDLNVAHNEIDLENP---------------KTNRKNAGFSDEERGKFNELLNAG-FIDT 185
Query: 146 YRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 205
+R+ + K+ + WS + + RIDYF+ S LK R+ + +
Sbjct: 186 FRYFYPNKEKAYTW-WSYMQQARDKNIGWRIDYFLCSHPLKTRL------KDALIYKDIL 238
Query: 206 GSDHCPVSLEL 216
GSDHCPV LEL
Sbjct: 239 GSDHCPVGLEL 249
>gi|429759794|ref|ZP_19292289.1| exodeoxyribonuclease III [Veillonella atypica KON]
gi|429179014|gb|EKY20276.1| exodeoxyribonuclease III [Veillonella atypica KON]
Length = 251
Score = 97.8 bits (242), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 64/193 (33%), Positives = 103/193 (53%), Gaps = 30/193 (15%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIW 85
+++ +GRVI AE++ FYL+ Y PN+ + E R W+ + ++L+ K P+I
Sbjct: 84 EHDQEGRVITAEYDNFYLVCCYTPNS--QRELARLDYRMTWEDAFRAYLLELDKKKPVIL 141
Query: 86 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 145
CGDLNV+H EID+ +P K + GF+ ER + +L+ G D
Sbjct: 142 CGDLNVAHNEIDLKNP---------------KTNRKNAGFSDEERAKMTELLESG-FTDT 185
Query: 146 YRFLHKEKDMDCGFSWSGNPIGKYRGKRM--RIDYFIVSEELKDRIIACEMQGHGIELEG 203
+R+L+ D +SW + +GK R + + RIDYFI S+ L D+I ++ +
Sbjct: 186 FRYLY--PDAVDEYSW-WSYMGKARDRNVGWRIDYFITSKRLDDKIKEAKIH------QQ 236
Query: 204 FYGSDHCPVSLEL 216
+GSDHCPV L++
Sbjct: 237 IFGSDHCPVELDI 249
>gi|384890060|ref|YP_005764362.1| exodeoxyribonuclease III [Helicobacter pylori v225d]
gi|297380626|gb|ADI35513.1| exodeoxyribonuclease III [Helicobacter pylori v225d]
Length = 250
Score = 97.8 bits (242), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 63/191 (32%), Positives = 96/191 (50%), Gaps = 26/191 (13%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIW 85
+++ +GRV+ EFE FYL+N Y PN+ ++ + R W+ ++F+ KP+I
Sbjct: 84 EHDKEGRVVTCEFELFYLVNVYVPNS--QQALSRLSYRMSWEVEFRKFLKALELKKPVIV 141
Query: 86 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 145
CGDLNV+H EID+ +P K + GF+ ER +F +L G ID
Sbjct: 142 CGDLNVAHNEIDLENP---------------KTNRKNAGFSDEERGKFNELLNAG-FIDT 185
Query: 146 YRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 205
+R+ + K+ + WS + + RIDYF+ S LK R+ + +
Sbjct: 186 FRYFYPNKEKAYTW-WSYMQQARDKNIGWRIDYFLCSNPLKTRL------KDALIYKDIL 238
Query: 206 GSDHCPVSLEL 216
GSDHCPV LEL
Sbjct: 239 GSDHCPVGLEL 249
>gi|167767320|ref|ZP_02439373.1| hypothetical protein CLOSS21_01839 [Clostridium sp. SS2/1]
gi|429761671|ref|ZP_19294088.1| exodeoxyribonuclease III [Anaerostipes hadrus DSM 3319]
gi|167711295|gb|EDS21874.1| exodeoxyribonuclease III [Clostridium sp. SS2/1]
gi|291559374|emb|CBL38174.1| exodeoxyribonuclease III [butyrate-producing bacterium SSC/2]
gi|429183247|gb|EKY24313.1| exodeoxyribonuclease III [Anaerostipes hadrus DSM 3319]
Length = 250
Score = 97.8 bits (242), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 69/201 (34%), Positives = 103/201 (51%), Gaps = 27/201 (13%)
Query: 17 SVFHFLLSALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVL 76
SVF + L +++ +GRVI EF+ +Y + Y PN+ + E R KW++ ++
Sbjct: 75 SVF-YGLGIEEHDQEGRVITLEFKDYYFITVYTPNS--QSELARLSYRMKWEEDFLAYLK 131
Query: 77 QCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGA 135
+ KP+I+CGDLNV+ EEID+ +P K + GFT ER++
Sbjct: 132 KLEEKKPVIFCGDLNVAVEEIDLKNP---------------KTNRKNAGFTDEEREKMRT 176
Query: 136 ILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQ 195
IL G ID +R+L+ ++ + WS + RIDYFIVSE LKDRI ++
Sbjct: 177 ILSNG-FIDTFRYLYPDQTGIYSW-WSYRFNARKNNAGWRIDYFIVSECLKDRISDAKI- 233
Query: 196 GHGIELEGFYGSDHCPVSLEL 216
L GSDHCP+ L+
Sbjct: 234 -----LTDVMGSDHCPIELDF 249
>gi|158298437|ref|XP_318609.4| AGAP009587-PA [Anopheles gambiae str. PEST]
gi|157013880|gb|EAA14571.4| AGAP009587-PA [Anopheles gambiae str. PEST]
Length = 606
Score = 97.8 bits (242), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 67/210 (31%), Positives = 111/210 (52%), Gaps = 32/210 (15%)
Query: 10 VCLCNNSSVFH--FLLSALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKW 67
V + + FH + L + + DGR++ AE+E FYL+ Y PN G K + +R +W
Sbjct: 420 VAIYSKKMPFHVAYGLGDEEQDQDGRLLTAEYEKFYLVCVYVPNAGRKL--VTLPKRLRW 477
Query: 68 DKRIQEFVLQCSGK-PLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFT 126
+++ +++ K P+I CGD+NV+HEEID+++P+ NK++ GFT
Sbjct: 478 NEKFHQYLRDLDAKKPVILCGDMNVAHEEIDLANPKT------------NKKNA---GFT 522
Query: 127 IAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRM--RIDYFIVSEE 184
ER+ +L G +D +R L+ ++ F W+ +G R K + R+DYFI SE
Sbjct: 523 PEEREGMTELLSYG-FVDTFRKLYPDRTGAYTF-WTY--MGGARAKNVGWRLDYFITSER 578
Query: 185 LKDRIIACEMQGHGIELEGFYGSDHCPVSL 214
L ++ ++ +GSDHCPV+L
Sbjct: 579 LAGKVTDNVIRSQ------VFGSDHCPVTL 602
>gi|365130338|ref|ZP_09341407.1| exodeoxyribonuclease III (xth) [Subdoligranulum sp. 4_3_54A2FAA]
gi|363620249|gb|EHL71547.1| exodeoxyribonuclease III (xth) [Subdoligranulum sp. 4_3_54A2FAA]
Length = 251
Score = 97.8 bits (242), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 62/187 (33%), Positives = 96/187 (51%), Gaps = 26/187 (13%)
Query: 31 DGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWCGDL 89
+GR I EFE F+L+N Y PN+ + E R +W+ ++ ++ + KP+++CGDL
Sbjct: 88 EGRAITLEFEQFFLVNVYTPNS--QNELARLPYRMQWEDDLRAYLCALDTEKPVVYCGDL 145
Query: 90 NVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFL 149
NV+H EID+ +P K++ GF+ ER++ +L G +D +R L
Sbjct: 146 NVAHREIDLKNP---------------KQNIHSAGFSYEERQKMTDLLMSG-FVDTFRAL 189
Query: 150 HKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDH 209
+ + + WS + RIDYFIVSE L+++I G + YGSDH
Sbjct: 190 YPDAAGRYTW-WSYFRRARETNAGWRIDYFIVSERLREKI------GDALIYSDVYGSDH 242
Query: 210 CPVSLEL 216
CPV L L
Sbjct: 243 CPVGLVL 249
>gi|301096360|ref|XP_002897277.1| exodeoxyribonuclease [Phytophthora infestans T30-4]
gi|262107161|gb|EEY65213.1| exodeoxyribonuclease [Phytophthora infestans T30-4]
Length = 362
Score = 97.8 bits (242), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 61/156 (39%), Positives = 86/156 (55%), Gaps = 20/156 (12%)
Query: 31 DGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRI-QEFVLQCSGKPLIWCGDL 89
+GR + EF F+L++TY PN G K E F R +WDK + +E KP+IWCGDL
Sbjct: 218 EGRFLALEFPKFWLVHTYVPNAGGKLERLDF-RTTQWDKAMHREMKEMEKTKPVIWCGDL 276
Query: 90 NVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFL 149
NV+H+EID+ +P K + GFT ER+ FG IL++G +D +R L
Sbjct: 277 NVAHQEIDIHNP---------------KGNHKSAGFTDEERESFGEILEDG-FVDTFRHL 320
Query: 150 HKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEEL 185
H + F + N K +G R+DYF+VSE+L
Sbjct: 321 HPDTVEYSYFGYRHNMRAKNKG--WRLDYFVVSEKL 354
>gi|242309877|ref|ZP_04809032.1| exodeoxyribonuclease LexA [Helicobacter pullorum MIT 98-5489]
gi|239523878|gb|EEQ63744.1| exodeoxyribonuclease LexA [Helicobacter pullorum MIT 98-5489]
Length = 256
Score = 97.8 bits (242), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 62/193 (32%), Positives = 100/193 (51%), Gaps = 30/193 (15%)
Query: 28 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 86
++ +GR+I AE+ F+L+N Y PN+ K E + R +W+ + F+ KP+I C
Sbjct: 89 HDKEGRIITAEYNDFFLVNVYTPNS--KRELERLEYRMEWEDDFRNFLKNLEVTKPVIVC 146
Query: 87 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 146
GDLNV+H+EID+ +P K + GFT ER++ +L G D +
Sbjct: 147 GDLNVAHKEIDLKNP---------------KTNRRNAGFTDEEREKMSVLLDSG-FTDTF 190
Query: 147 RFLHKEKDMDCGFSWSGNPIGKYRGKRM--RIDYFIVSEELKDRIIACEMQGHGIELEGF 204
R+ H ++ +SW + +GK R RIDYF+ S+ L ++ + +
Sbjct: 191 RYFHPT--LEGAYSW-WSYMGKARENNTGWRIDYFLCSKALDSKLKSASIYPE------I 241
Query: 205 YGSDHCPVSLELS 217
+GSDHCPV LE++
Sbjct: 242 FGSDHCPVGLEIN 254
>gi|403385824|ref|ZP_10927881.1| exodeoxyribonuclease [Kurthia sp. JC30]
Length = 252
Score = 97.8 bits (242), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 63/191 (32%), Positives = 101/191 (52%), Gaps = 30/191 (15%)
Query: 29 EPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWCG 87
E +GR+I E+E FY++ Y PN+ K + R +W+ ++ ++++ KP+I+CG
Sbjct: 86 EDEGRIITLEYERFYVVTVYTPNS--KRDLARLDERLEWEDNLRAYLIELDQQKPVIYCG 143
Query: 88 DLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYR 147
DLNV+HE ID+ + + PN G GFT ER + +L G D +R
Sbjct: 144 DLNVAHEAIDLKNAK------------PNV---GNSGFTNEERGKMTLLLNSG-FTDTFR 187
Query: 148 FLHKEKDMDCGFSWSGNPIGKYRGKRM--RIDYFIVSEELKDRIIACEMQGHGIELEGFY 205
++ ++D F+W + + K R + + RIDYFIVS+ L + ++ +
Sbjct: 188 AMYPQEDN--RFTW-WSYMNKVRERNIGWRIDYFIVSDRLNQHVTNADIHDQQL------ 238
Query: 206 GSDHCPVSLEL 216
GSDHCPV LEL
Sbjct: 239 GSDHCPVVLEL 249
>gi|283769444|ref|ZP_06342342.1| exodeoxyribonuclease III [Bulleidia extructa W1219]
gi|283103969|gb|EFC05354.1| exodeoxyribonuclease III [Bulleidia extructa W1219]
Length = 251
Score = 97.8 bits (242), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 62/188 (32%), Positives = 102/188 (54%), Gaps = 29/188 (15%)
Query: 31 DGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGDL 89
+GRVI E+ +Y + Y PN+ KE R +W+ R+++ + + KP+I+ GDL
Sbjct: 89 EGRVITLEYPNYYFVTAYVPNS--KEGLARLGFRMEWEDRLRDHLNRLKEVKPVIYTGDL 146
Query: 90 NVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFL 149
NV+HEEID+ +P+ + PGF+ ER++ +L +G ID++R+L
Sbjct: 147 NVAHEEIDLKNPQ---------------SNHKNPGFSDEERQKMTELLADG-YIDSFRYL 190
Query: 150 HKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSD 208
+ + + +S WS + R RIDYFIVSE LK+++ + + + GSD
Sbjct: 191 YPK---EVKYSWWSYRAAARERNVGWRIDYFIVSENLKEKV------KNALIDDEVKGSD 241
Query: 209 HCPVSLEL 216
HCP+ LE+
Sbjct: 242 HCPIELEM 249
>gi|302345223|ref|YP_003813576.1| exodeoxyribonuclease III [Prevotella melaninogenica ATCC 25845]
gi|302150206|gb|ADK96468.1| exodeoxyribonuclease III [Prevotella melaninogenica ATCC 25845]
Length = 249
Score = 97.8 bits (242), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 64/192 (33%), Positives = 99/192 (51%), Gaps = 29/192 (15%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIW 85
+++ +GRVI E E FYL+ Y PN+ ++ + R KW+ Q ++ + KP+I
Sbjct: 84 EHDHEGRVITLEMEDFYLVTVYTPNS--QDGLRRLEYRMKWEDDFQAYLHKLDEKKPVIV 141
Query: 86 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 145
CGD+NV+H+EID+ +P K + GFT ER++ +L G ID
Sbjct: 142 CGDMNVAHQEIDLKNP---------------KTNHKNAGFTDEEREKMTQLLSNG-FIDT 185
Query: 146 YRFLHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGF 204
+R L+ E+ +S WS + + RIDYF++SE LKDR+ ++
Sbjct: 186 FRTLYPEQ---VTYSWWSYRFRAREKNTGWRIDYFLISERLKDRLEDAKIHTE------I 236
Query: 205 YGSDHCPVSLEL 216
GSDHCPV + L
Sbjct: 237 MGSDHCPVEIIL 248
>gi|425790226|ref|YP_007018143.1| exodeoxyribonuclease III [Helicobacter pylori Aklavik86]
gi|425628541|gb|AFX89081.1| exodeoxyribonuclease III [Helicobacter pylori Aklavik86]
Length = 250
Score = 97.8 bits (242), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 63/191 (32%), Positives = 97/191 (50%), Gaps = 26/191 (13%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIW 85
+++ +GRV+ EFE+FYL+N Y PN+ ++ + R W+ ++F+ KP+I
Sbjct: 84 EHDKEGRVVTCEFESFYLVNVYVPNS--QQALSRLSYRMGWEVEFRKFLKALELKKPVIV 141
Query: 86 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 145
CGDLNV+H EID+ +P K + GF+ ER +F +L G ID
Sbjct: 142 CGDLNVAHNEIDLENP---------------KTNRKNAGFSDEERGKFNELLDAG-FIDT 185
Query: 146 YRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 205
+R+ + K+ + WS + + RIDYF+ S LK R+ + +
Sbjct: 186 FRYFYPNKEKAYTW-WSYMQQARDKNIGWRIDYFLCSNPLKTRL------KDALIYKDIL 238
Query: 206 GSDHCPVSLEL 216
GSDHCPV LEL
Sbjct: 239 GSDHCPVGLEL 249
>gi|386751875|ref|YP_006225095.1| exodeoxyribonuclease III [Helicobacter pylori Shi417]
gi|384558133|gb|AFH98601.1| exodeoxyribonuclease III [Helicobacter pylori Shi417]
Length = 250
Score = 97.8 bits (242), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 63/191 (32%), Positives = 96/191 (50%), Gaps = 26/191 (13%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIW 85
+++ +GRV+ EFE FYL+N Y PN+ ++ + R W+ ++F+ KP+I
Sbjct: 84 EHDKEGRVVTCEFELFYLVNVYVPNS--QQALSRLSYRMSWEVEFRKFLKALELKKPVIV 141
Query: 86 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 145
CGDLNV+H EID+ +P K + GF+ ER +F +L G ID
Sbjct: 142 CGDLNVAHNEIDLENP---------------KTNRKNAGFSDEERGKFNELLNAG-FIDT 185
Query: 146 YRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 205
+R+ + K+ + WS + + RIDYF+ S LK R+ + +
Sbjct: 186 FRYFYPNKEKAYTW-WSYMQQARDKNIGWRIDYFLCSHPLKTRL------KDALIYKDIL 238
Query: 206 GSDHCPVSLEL 216
GSDHCPV LEL
Sbjct: 239 GSDHCPVGLEL 249
>gi|258648040|ref|ZP_05735509.1| exodeoxyribonuclease III [Prevotella tannerae ATCC 51259]
gi|260851895|gb|EEX71764.1| exodeoxyribonuclease III [Prevotella tannerae ATCC 51259]
Length = 250
Score = 97.8 bits (242), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 64/192 (33%), Positives = 97/192 (50%), Gaps = 28/192 (14%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIW 85
+++ +GRVI E + FYL+ Y PN+ ++E R W++ Q + + KP+I
Sbjct: 84 EHDHEGRVITLELDDFYLVCVYTPNS--QDELRRLDYRMIWEEAFQAHLHKLDAHKPVIV 141
Query: 86 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 145
CGD+NV+H+EID+ +P K + GFT ER++ +L G ID
Sbjct: 142 CGDMNVAHQEIDLKNP---------------KTNRRNAGFTDEEREKMTQLLSNG-FIDT 185
Query: 146 YRFLHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGF 204
+R+ H D+ +S WS + + RIDYF+VSE LK R++ +
Sbjct: 186 FRYFH--PDLTGAYSWWSYRFRAREKNTGWRIDYFLVSERLKPRLVEANIHN------DI 237
Query: 205 YGSDHCPVSLEL 216
GSDHCPV L L
Sbjct: 238 MGSDHCPVELIL 249
>gi|170665740|gb|ACB29409.1| apurinic endonuclease-redox protein [Arabidopsis thaliana]
Length = 538
Score = 97.8 bits (242), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 67/196 (34%), Positives = 102/196 (52%), Gaps = 27/196 (13%)
Query: 23 LSALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGK 81
LS ++ +GR++ AEF++FYL+NTY PN+G + S+ R +WD+ + + + K
Sbjct: 366 LSGSDHDTEGRIVTAEFDSFYLINTYVPNSGDGLKRLSY-RIEEWDRTLSNHIKELEKSK 424
Query: 82 PLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGR 141
P++ GDLN +HEEID+ +P A K + GFT ER+ FGA +
Sbjct: 425 PVVLTGDLNCAHEEIDIFNP---AGNKRSA------------GFTEEERQSFGANFLDKG 469
Query: 142 LIDAYRFLHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIE 200
+D +R K+ G++ W G+ K R+DYF+VS+ IA + I
Sbjct: 470 FVDTFR---KQHPGVVGYTYWGYRHGGRKTNKGWRLDYFLVSQS-----IAANVHDSYI- 520
Query: 201 LEGFYGSDHCPVSLEL 216
L GSDHCP+ L L
Sbjct: 521 LPDINGSDHCPIGLIL 536
>gi|178743|gb|AAA58371.1| apurinic endonuclease [Homo sapiens]
Length = 318
Score = 97.8 bits (242), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 62/192 (32%), Positives = 104/192 (54%), Gaps = 25/192 (13%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQ-CSGKPLIW 85
+++ +GRVI+AEF++F L+ Y PN G + R++WD+ ++F+ S KPL+
Sbjct: 150 EHDQEGRVIVAEFDSFVLVTAYVPNAG--RGLVRLEYRQRWDEAFRKFLKGLASRKPLVL 207
Query: 86 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 145
CGDLNV+HEEID+ +P+ NK++ GFT ER+ FG +L+ L D+
Sbjct: 208 CGDLNVAHEEIDLRNPKG------------NKKN---AGFTPQERQGFGELLQAVPLADS 252
Query: 146 YRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 205
+R L+ F W+ + + R+DYF++S L + +++ +
Sbjct: 253 FRHLYPNTPYAYTF-WTYMMNARSKNVGWRLDYFLLSHSLLPALCDSKIRSKAL------ 305
Query: 206 GSDHCPVSLELS 217
SDHCP++L L+
Sbjct: 306 ASDHCPITLYLA 317
>gi|420405856|ref|ZP_14905029.1| exodeoxyribonuclease III [Helicobacter pylori CPY6271]
gi|393021675|gb|EJB22805.1| exodeoxyribonuclease III [Helicobacter pylori CPY6271]
Length = 250
Score = 97.8 bits (242), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 62/191 (32%), Positives = 97/191 (50%), Gaps = 26/191 (13%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIW 85
+++ +GR++ EFE+FYL+N Y PN+ ++ + R W+ ++F+ KP+I
Sbjct: 84 EHDKEGRMVTCEFESFYLVNVYTPNS--QQALSRLSYRMSWEVEFKKFLKALELKKPVIV 141
Query: 86 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 145
CGDLNV+H EID+ +P K + GF+ ER +F +L G ID
Sbjct: 142 CGDLNVAHNEIDLENP---------------KTNRKNAGFSDEERGKFNELLNAG-FIDT 185
Query: 146 YRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 205
+R+ + K+ + WS + + RIDYF+ S LK R+ + +
Sbjct: 186 FRYFYPNKEKAYTW-WSYMQQARDKNIGWRIDYFLCSNPLKTRL------KDALIYKDIL 238
Query: 206 GSDHCPVSLEL 216
GSDHCPV LEL
Sbjct: 239 GSDHCPVGLEL 249
>gi|384895029|ref|YP_005769078.1| exodeoxyribonuclease III [Helicobacter pylori Sat464]
gi|308064283|gb|ADO06170.1| exodeoxyribonuclease III [Helicobacter pylori Sat464]
Length = 250
Score = 97.8 bits (242), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 63/191 (32%), Positives = 96/191 (50%), Gaps = 26/191 (13%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIW 85
+++ +GRV+ EFE FYL+N Y PN+ ++ + R W+ ++F+ KP+I
Sbjct: 84 EHDKEGRVVTCEFELFYLVNVYVPNS--QQALSRLSYRMSWEVEFRKFLKALELKKPVIV 141
Query: 86 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 145
CGDLNV+H EID+ +P K + GF+ ER +F +L G ID
Sbjct: 142 CGDLNVAHNEIDLENP---------------KTNRKNAGFSDEERGKFNELLNAG-FIDT 185
Query: 146 YRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 205
+R+ + K+ + WS + + RIDYF+ S LK R+ + +
Sbjct: 186 FRYFYPNKEKAYTW-WSYMQQARDKNIGWRIDYFLCSHPLKTRL------KDALIYKDIL 238
Query: 206 GSDHCPVSLEL 216
GSDHCPV LEL
Sbjct: 239 GSDHCPVGLEL 249
>gi|420484801|ref|ZP_14983422.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-3]
gi|420515183|ref|ZP_15013650.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-3b]
gi|393098636|gb|EJB99222.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-3]
gi|393155626|gb|EJC55898.1| exodeoxyribonuclease III [Helicobacter pylori Hp P-3b]
Length = 250
Score = 97.8 bits (242), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 63/191 (32%), Positives = 97/191 (50%), Gaps = 26/191 (13%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIW 85
+++ +GRVI EFE+FYL+N Y PN+ ++ + R W+ ++F+ KP+I
Sbjct: 84 EHDKEGRVITCEFESFYLVNVYTPNS--QQALSRLSYRMSWEVEFKKFLKALELKKPVIV 141
Query: 86 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 145
CGDLNV+H EID+ +P K + GF+ ER++F +L G ID
Sbjct: 142 CGDLNVAHNEIDLENP---------------KTNRKNAGFSDEEREKFNELLNAG-FIDT 185
Query: 146 YRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 205
+R+ + K+ + WS + + RIDYF+ S LK + + +
Sbjct: 186 FRYFYPNKEKAYTW-WSYMQQARDKDIGWRIDYFLCSNPLKTHL------KDALIYKDIL 238
Query: 206 GSDHCPVSLEL 216
GSDHCPV LEL
Sbjct: 239 GSDHCPVGLEL 249
>gi|385226164|ref|YP_005786089.1| exodeoxyribonuclease III [Helicobacter pylori 83]
gi|332674310|gb|AEE71127.1| exodeoxyribonuclease III [Helicobacter pylori 83]
Length = 250
Score = 97.8 bits (242), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 62/191 (32%), Positives = 97/191 (50%), Gaps = 26/191 (13%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIW 85
+++ +GR++ EFE+FYL+N Y PN+ ++ + R W+ ++F+ KP+I
Sbjct: 84 EHDKEGRMVTCEFESFYLVNVYTPNS--QQALSRLSYRMSWEVEFRKFLKALELKKPVIV 141
Query: 86 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 145
CGDLNV+H EID+ +P K + GF+ ER +F +L G ID
Sbjct: 142 CGDLNVAHNEIDLENP---------------KTNRKNAGFSDEERGKFNELLNAG-FIDT 185
Query: 146 YRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 205
+R+ + K+ + WS + + RIDYF+ S LK R+ + +
Sbjct: 186 FRYFYPNKEKAYTW-WSYMQQARDKNIGWRIDYFLCSNPLKTRL------KDALIYKDIL 238
Query: 206 GSDHCPVSLEL 216
GSDHCPV LEL
Sbjct: 239 GSDHCPVGLEL 249
>gi|358068175|ref|ZP_09154645.1| exodeoxyribonuclease [Johnsonella ignava ATCC 51276]
gi|356693719|gb|EHI55390.1| exodeoxyribonuclease [Johnsonella ignava ATCC 51276]
Length = 252
Score = 97.8 bits (242), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 63/193 (32%), Positives = 102/193 (52%), Gaps = 30/193 (15%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIW 85
+++ +GR+I AEFE +Y+L Y PN+ + + + R W+ +++ S KPLI+
Sbjct: 85 EHDNEGRIITAEFENYYMLTCYTPNS--QRQLTRLEYRMDWEDAFLDYIKNLSQKKPLIY 142
Query: 86 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 145
CGDLNV+ +ID+ +P K + GFT ER++ + G D+
Sbjct: 143 CGDLNVAFADIDLKNP---------------KTNRKNAGFTDEERQKMAVVQASG-FTDS 186
Query: 146 YRFLHKEKDMDCGFSWSGNPIGKYRGKRM--RIDYFIVSEELKDRIIACEMQGHGIELEG 203
+R+L+ D++ +SW + +G R K + RIDYF+VS+ LK+ I +
Sbjct: 187 FRYLY--PDLEGVYSW-WSYMGGARSKNIGWRIDYFMVSDSLKNCIKQARIH------TD 237
Query: 204 FYGSDHCPVSLEL 216
GSDHCPV LE+
Sbjct: 238 IMGSDHCPVELEI 250
>gi|321313648|ref|YP_004205935.1| apurinic/apyrimidinic endonuclease [Bacillus subtilis BSn5]
gi|430756766|ref|YP_007207426.1| exodeoxyribonuclease [Bacillus subtilis subsp. subtilis str. BSP1]
gi|320019922|gb|ADV94908.1| apurinic/apyrimidinic endonuclease [Bacillus subtilis BSn5]
gi|430021286|gb|AGA21892.1| Exodeoxyribonuclease [Bacillus subtilis subsp. subtilis str. BSP1]
Length = 252
Score = 97.4 bits (241), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 63/190 (33%), Positives = 100/190 (52%), Gaps = 28/190 (14%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIW 85
+++ +GRVI EFE +++ Y PN+ E + R +W++ + ++L+ KP+I
Sbjct: 85 EHDQEGRVITLEFENVFVMTVYTPNSRRGLERIDY--RMQWEEALLSYILELDQKKPVIL 142
Query: 86 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 145
CGDLNV+H+EID+ +P K + GF+ ER+ F L+ G +D+
Sbjct: 143 CGDLNVAHQEIDLKNP---------------KANRNNAGFSDQEREAFTRFLEAG-FVDS 186
Query: 146 YRFLHKEKDMDCGFSWSGNPIG-KYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGF 204
+R H D++ +SW G + R RIDYF+VSE LK++I + +
Sbjct: 187 FR--HVYPDLEGAYSWWSYRAGARDRNIGWRIDYFVVSESLKEQIEDASISADVM----- 239
Query: 205 YGSDHCPVSL 214
GSDHCPV L
Sbjct: 240 -GSDHCPVEL 248
>gi|169345728|ref|ZP_02865687.1| exodeoxyribonuclease III [Clostridium perfringens C str. JGS1495]
gi|169297128|gb|EDS79244.1| exodeoxyribonuclease III [Clostridium perfringens C str. JGS1495]
Length = 250
Score = 97.4 bits (241), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 63/189 (33%), Positives = 98/189 (51%), Gaps = 28/189 (14%)
Query: 28 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGKP-LIWC 86
++ +GRVI EFE F+++ Y PN+ + E + R +W+ + ++L+ S K ++ C
Sbjct: 85 HDKEGRVITLEFEDFFMVTVYTPNS--QSELARLEYRMEWEDDFRNYLLELSSKKGVVVC 142
Query: 87 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 146
GDLNV+H+EID+ +P K + GFT ER +F +L G ID +
Sbjct: 143 GDLNVAHKEIDLKNP---------------KTNRKNAGFTDEERDKFSTLLSSG-FIDTF 186
Query: 147 RFLHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 205
R+ + D++ +S WS + RIDYF+VS L+DRI + +
Sbjct: 187 RYFN--PDLEGVYSWWSYRFNARKNNAGWRIDYFLVSNNLEDRIKEAFIDTEIL------ 238
Query: 206 GSDHCPVSL 214
GSDHCPV L
Sbjct: 239 GSDHCPVKL 247
>gi|16081140|ref|NP_391968.1| apurinic/apyrimidinic endonuclease [Bacillus subtilis subsp.
subtilis str. 168]
gi|221312070|ref|ZP_03593917.1| multifunctional DNA-repair enzyme [Bacillus subtilis subsp.
subtilis str. 168]
gi|221316395|ref|ZP_03598200.1| multifunctional DNA-repair enzyme [Bacillus subtilis subsp.
subtilis str. NCIB 3610]
gi|221321308|ref|ZP_03602602.1| multifunctional DNA-repair enzyme [Bacillus subtilis subsp.
subtilis str. JH642]
gi|221325591|ref|ZP_03606885.1| multifunctional DNA-repair enzyme [Bacillus subtilis subsp.
subtilis str. SMY]
gi|402778258|ref|YP_006632202.1| Apurinic/apyrimidinic endonuclease [Bacillus subtilis QB928]
gi|452912770|ref|ZP_21961398.1| exodeoxyribonuclease III [Bacillus subtilis MB73/2]
gi|585113|sp|P37454.1|EXOA_BACSU RecName: Full=Exodeoxyribonuclease
gi|467372|dbj|BAA05218.1| 3'-exo-deoxyribonuclease [Bacillus subtilis]
gi|2636635|emb|CAB16125.1| apurinic/apyrimidinic endonuclease [Bacillus subtilis subsp.
subtilis str. 168]
gi|402483437|gb|AFQ59946.1| Apurinic/apyrimidinic endonuclease [Bacillus subtilis QB928]
gi|407962942|dbj|BAM56182.1| apurinic/apyrimidinic endonuclease [Bacillus subtilis BEST7613]
gi|407966954|dbj|BAM60193.1| apurinic/apyrimidinic endonuclease [Bacillus subtilis BEST7003]
gi|452117798|gb|EME08192.1| exodeoxyribonuclease III [Bacillus subtilis MB73/2]
Length = 252
Score = 97.4 bits (241), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 63/190 (33%), Positives = 100/190 (52%), Gaps = 28/190 (14%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIW 85
+++ +GRVI EFE +++ Y PN+ E + R +W++ + ++L+ KP+I
Sbjct: 85 EHDQEGRVITLEFENVFVMTVYTPNSRRGLERIDY--RMQWEEALLSYILELDQKKPVIL 142
Query: 86 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 145
CGDLNV+H+EID+ +P K + GF+ ER+ F L+ G +D+
Sbjct: 143 CGDLNVAHQEIDLKNP---------------KANRNNAGFSDQEREAFTRFLEAG-FVDS 186
Query: 146 YRFLHKEKDMDCGFSWSGNPIG-KYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGF 204
+R H D++ +SW G + R RIDYF+VSE LK++I + +
Sbjct: 187 FR--HVYPDLEGAYSWWSYRAGARDRNIGWRIDYFVVSESLKEQIEDASISADVM----- 239
Query: 205 YGSDHCPVSL 214
GSDHCPV L
Sbjct: 240 -GSDHCPVEL 248
>gi|404371536|ref|ZP_10976840.1| exodeoxyribonuclease III (xth) [Clostridium sp. 7_2_43FAA]
gi|226912337|gb|EEH97538.1| exodeoxyribonuclease III (xth) [Clostridium sp. 7_2_43FAA]
Length = 251
Score = 97.4 bits (241), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 61/196 (31%), Positives = 101/196 (51%), Gaps = 26/196 (13%)
Query: 23 LSALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFV-LQCSGK 81
L +++ +GRVI EFE FY++ Y PN+ K E R W+ ++++ + K
Sbjct: 80 LGIEEHDKEGRVITLEFENFYMVTVYTPNS--KNELARLDYRMVWEDAFRDYLKVLDEKK 137
Query: 82 PLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGR 141
P+I CGDLNV+H+EID+ +P K + GFT ER +F +L G
Sbjct: 138 PVIVCGDLNVAHKEIDLKNP---------------KTNLRNAGFTEEERSKFTELLNAG- 181
Query: 142 LIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIEL 201
+D +R+ + + ++ WS + + RIDYF+VS +KD++ ++ +
Sbjct: 182 FVDTFRYFYPD-EVGAYSWWSYRFNARAKNAGWRIDYFLVSNSVKDKLEDAKIHSEVL-- 238
Query: 202 EGFYGSDHCPVSLELS 217
GSDHCPV L+++
Sbjct: 239 ----GSDHCPVELKIN 250
>gi|335045714|ref|ZP_08538737.1| exodeoxyribonuclease III [Oribacterium sp. oral taxon 108 str.
F0425]
gi|333759500|gb|EGL37057.1| exodeoxyribonuclease III [Oribacterium sp. oral taxon 108 str.
F0425]
Length = 251
Score = 97.4 bits (241), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 62/191 (32%), Positives = 100/191 (52%), Gaps = 27/191 (14%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIW 85
+++ +GRVI AEF+ FYL+ Y PN+ + E R +++ ++L KP+++
Sbjct: 85 EHDQEGRVITAEFKDFYLITVYVPNS--QGELKRLPYRMEFEDAFLSYILNLEKKKPVVY 142
Query: 86 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 145
CGDLNV+HEEID+ +P+ + GF+ ER +F +L G L D+
Sbjct: 143 CGDLNVAHEEIDLKNPD---------------TNHLSAGFSDEERAKFSRVLDSGYL-DS 186
Query: 146 YRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 205
+R+ + EK+ WS + R RIDYF+VS++L+ ++ + +
Sbjct: 187 FRYFYPEKEEYSW--WSYRTKARERNVGWRIDYFVVSKKLEKKLHSASIHTE------IM 238
Query: 206 GSDHCPVSLEL 216
GSDHCPV L L
Sbjct: 239 GSDHCPVELIL 249
>gi|390952993|ref|YP_006416751.1| exodeoxyribonuclease III [Aequorivita sublithincola DSM 14238]
gi|390418979|gb|AFL79736.1| exodeoxyribonuclease III [Aequorivita sublithincola DSM 14238]
Length = 254
Score = 97.4 bits (241), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 65/196 (33%), Positives = 97/196 (49%), Gaps = 28/196 (14%)
Query: 23 LSALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGK 81
+ +++ +GRVI AE++TFYL+N Y PN+G K E + R+ WD ++ K
Sbjct: 83 MGIAEHDTEGRVICAEYDTFYLVNVYVPNSGQKLERLDY--RKGWDTDFHNYLKNIEKTK 140
Query: 82 PLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGR 141
+I CGDLNV+H+ ID+ N NK G+T E L EG
Sbjct: 141 SVILCGDLNVAHQAIDLK----------NDKANYNK----TAGYTQIEIDGMDNFLNEG- 185
Query: 142 LIDAYRFLHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIE 200
+D +R H E ++ WS + R RIDYF+VS L +++ E+
Sbjct: 186 FVDTFRHFHPET---VAYTYWSYRFKSRERNTGWRIDYFLVSNPLVEKVNKVEI------ 236
Query: 201 LEGFYGSDHCPVSLEL 216
L ++GSDHCP+ LE+
Sbjct: 237 LSEYFGSDHCPIKLEI 252
>gi|359412352|ref|ZP_09204817.1| exodeoxyribonuclease III Xth [Clostridium sp. DL-VIII]
gi|357171236|gb|EHI99410.1| exodeoxyribonuclease III Xth [Clostridium sp. DL-VIII]
Length = 252
Score = 97.4 bits (241), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 63/193 (32%), Positives = 103/193 (53%), Gaps = 28/193 (14%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIW 85
+++ +GRVI EF+ FYL+N Y PN+ K+ R W+ ++++ + KP+I
Sbjct: 85 EHDTEGRVITLEFKEFYLVNVYTPNS--KQGLERLDYRMVWEDVFRKYLKELEEKKPVII 142
Query: 86 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 145
CGDLNV+HE+ID+ +P K + GFT ER + +L+ G ID
Sbjct: 143 CGDLNVAHEDIDLKNP---------------KANRKNAGFTDEERNKISELLEAG-FIDT 186
Query: 146 YRFLHKEKD-MDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGF 204
YR+ + + + +S+ N G G RIDYF+ SE LKD+++ ++ + +
Sbjct: 187 YRYFYPNTEGVYSWWSYRFNARGNNAG--WRIDYFLASESLKDKLVDAKIHMNVM----- 239
Query: 205 YGSDHCPVSLELS 217
GSDHCPV + ++
Sbjct: 240 -GSDHCPVEVMVN 251
>gi|313144803|ref|ZP_07806996.1| exodeoxyribonuclease LexA [Helicobacter cinaedi CCUG 18818]
gi|313129834|gb|EFR47451.1| exodeoxyribonuclease LexA [Helicobacter cinaedi CCUG 18818]
gi|396078071|dbj|BAM31447.1| exodeoxyribonuclease [Helicobacter cinaedi ATCC BAA-847]
Length = 251
Score = 97.4 bits (241), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 65/192 (33%), Positives = 99/192 (51%), Gaps = 30/192 (15%)
Query: 28 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWC 86
++ +GR+I AE+E FYL+N Y PN K E + R +W+ + FV + KP++ C
Sbjct: 85 HDKEGRIITAEYERFYLVNVYTPNA--KRELERLEYRMEWEDDFRAFVKKLKKHKPVVIC 142
Query: 87 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 146
GDLNV+H+EID+ +P K + GFT ER + +L+ G ID +
Sbjct: 143 GDLNVAHKEIDLKNP---------------KTNRRNAGFTDEERGKMSELLESG-FIDTF 186
Query: 147 RFLHKEKDMDCGFSWSGNPIGKYRGKRM--RIDYFIVSEELKDRIIACEMQGHGIELEGF 204
R H ++ +SW + +GK R RIDYF+ S L+ + ++ H
Sbjct: 187 R--HFYPTLEGAYSW-WSYMGKARENNTGWRIDYFLCSTSLESHLKDAKIYPH------I 237
Query: 205 YGSDHCPVSLEL 216
+GSDHCPV L +
Sbjct: 238 FGSDHCPVGLSM 249
>gi|386760994|ref|YP_006234629.1| exodeoxyribonuclease LexA [Helicobacter cinaedi PAGU611]
gi|385146010|dbj|BAM11518.1| exodeoxyribonuclease LexA [Helicobacter cinaedi PAGU611]
Length = 251
Score = 97.4 bits (241), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 65/192 (33%), Positives = 99/192 (51%), Gaps = 30/192 (15%)
Query: 28 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWC 86
++ +GR+I AE+E FYL+N Y PN K E + R +W+ + FV + KP++ C
Sbjct: 85 HDKEGRIITAEYERFYLVNVYTPNA--KRELERLEYRMEWEDDFRAFVKKLKKHKPVVIC 142
Query: 87 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 146
GDLNV+H+EID+ +P K + GFT ER + +L+ G ID +
Sbjct: 143 GDLNVAHKEIDLKNP---------------KTNRRNAGFTDEERGKMSELLESG-FIDTF 186
Query: 147 RFLHKEKDMDCGFSWSGNPIGKYRGKRM--RIDYFIVSEELKDRIIACEMQGHGIELEGF 204
R H ++ +SW + +GK R RIDYF+ S L+ + ++ H
Sbjct: 187 R--HFYPTLEGAYSW-WSYMGKARENNTGWRIDYFLCSTSLESHLKDAKIYPH------I 237
Query: 205 YGSDHCPVSLEL 216
+GSDHCPV L +
Sbjct: 238 FGSDHCPVGLSM 249
>gi|335047397|ref|ZP_08540418.1| exodeoxyribonuclease III [Parvimonas sp. oral taxon 110 str. F0139]
gi|333761205|gb|EGL38760.1| exodeoxyribonuclease III [Parvimonas sp. oral taxon 110 str. F0139]
Length = 250
Score = 97.4 bits (241), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 59/191 (30%), Positives = 102/191 (53%), Gaps = 26/191 (13%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIW 85
+++ +GR+I E+E F+L+ Y PN+ K+E R W+ + ++L+ + K +I
Sbjct: 84 EHDNEGRLITLEYEDFFLVTCYTPNS--KQELLRLDYRMVWEDAFRNYLLELNKTKSVIV 141
Query: 86 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 145
CGDLNV+H+EID+ +P K + GFT ER++ +L G D
Sbjct: 142 CGDLNVAHKEIDLKNP---------------KTNRKNAGFTDQEREKMSILLDSG-FTDT 185
Query: 146 YRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 205
+R+ + +K+ + + WS + R RIDYF+ S+++ DR++ ++ +
Sbjct: 186 FRYFYPDKENEYSW-WSYFGKSRERNTGWRIDYFLTSKDMDDRLVDAQIH------QRIL 238
Query: 206 GSDHCPVSLEL 216
GSDHCPV LE+
Sbjct: 239 GSDHCPVYLEI 249
>gi|237743089|ref|ZP_04573570.1| exodeoxyribonuclease III [Fusobacterium sp. 7_1]
gi|229433385|gb|EEO43597.1| exodeoxyribonuclease III [Fusobacterium sp. 7_1]
Length = 253
Score = 97.4 bits (241), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 68/201 (33%), Positives = 104/201 (51%), Gaps = 38/201 (18%)
Query: 23 LSALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGK 81
L +++ +GRVI EFE FY++ Y PN+ K+E R W+ ++++ K
Sbjct: 80 LGIEEHDKEGRVITLEFEKFYMVTVYTPNS--KDELLRLDYRMIWEDEFRKYLKNLEKKK 137
Query: 82 PLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGR 141
P++ CGDLNV+H+EID+ +P K + GFT ER +F +L G
Sbjct: 138 PVVVCGDLNVAHKEIDLKNP---------------KTNRRNAGFTDEERGKFTELLDSG- 181
Query: 142 LIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRM------RIDYFIVSEELKDRIIACEMQ 195
ID +R+ + +++ +SW YRG+ RIDYF+VS+EL+ ++ E+
Sbjct: 182 FIDTFRYFY--PNLEQVYSWWS-----YRGRARENNAGWRIDYFVVSKELEKNLVDAEIH 234
Query: 196 GHGIELEGFYGSDHCPVSLEL 216
IE GSDHCPV L L
Sbjct: 235 TQ-IE-----GSDHCPVVLFL 249
>gi|225026087|ref|ZP_03715279.1| hypothetical protein EUBHAL_00328 [Eubacterium hallii DSM 3353]
gi|224956574|gb|EEG37783.1| exodeoxyribonuclease III [Eubacterium hallii DSM 3353]
Length = 250
Score = 97.4 bits (241), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 64/192 (33%), Positives = 103/192 (53%), Gaps = 28/192 (14%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIW 85
+++ +GRVI EFE F+ + Y PN+ + E R KW+ +E++ + KP+I
Sbjct: 84 EHDQEGRVITLEFEDFFFVTVYTPNS--QSELKRLDYRMKWEDDFREYLQELDKEKPVIM 141
Query: 86 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 145
GDLNV+HEEID+ +P+ NK++ GFT ER +F +L G +D+
Sbjct: 142 TGDLNVAHEEIDLKNPK------------TNKKN---AGFTQEERNKFTELLGAG-FVDS 185
Query: 146 YRFLHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGF 204
+R+L+ E + ++ WS + + RIDYF+VSE K++I I +
Sbjct: 186 FRYLNPE--LAGAYTWWSYRFKAREKDAGWRIDYFVVSERWKEKI------EDAIIYKTV 237
Query: 205 YGSDHCPVSLEL 216
GSDHCP+ L++
Sbjct: 238 MGSDHCPIGLQM 249
>gi|422315442|ref|ZP_16396878.1| exodeoxyribonuclease III (xth) [Fusobacterium periodonticum D10]
gi|404592436|gb|EKA94265.1| exodeoxyribonuclease III (xth) [Fusobacterium periodonticum D10]
Length = 253
Score = 97.4 bits (241), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 64/196 (32%), Positives = 100/196 (51%), Gaps = 28/196 (14%)
Query: 23 LSALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGK 81
L +++ +GRVI EFE FY++ Y PN+ K+E R W+ ++++ K
Sbjct: 80 LGIEEHDKEGRVITLEFEKFYMITVYTPNS--KDELLRLDYRMVWEDEFRKYLKNLEKKK 137
Query: 82 PLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGR 141
P++ CGDLNV+H+EID+ +P K + GFT ER +F +L+ G
Sbjct: 138 PVVVCGDLNVAHKEIDLKNP---------------KTNRRNAGFTDEERGKFTELLESG- 181
Query: 142 LIDAYRFLHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIE 200
ID +R+ + D++ +S WS + RIDYF+VS+ L+ ++ E+
Sbjct: 182 FIDTFRYFY--PDLEHVYSWWSYRANARKNNTGWRIDYFVVSKALEKYLVDAEIHAQT-- 237
Query: 201 LEGFYGSDHCPVSLEL 216
GSDHCPV L L
Sbjct: 238 ----EGSDHCPVVLFL 249
>gi|291546831|emb|CBL19939.1| exodeoxyribonuclease III [Ruminococcus sp. SR1/5]
Length = 251
Score = 97.4 bits (241), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 62/191 (32%), Positives = 100/191 (52%), Gaps = 26/191 (13%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIW 85
+++ +GRVI EF+ +Y + Y PN+ + E + R KW++ ++L+ KP+I
Sbjct: 84 EHDKEGRVITLEFDEYYFVTVYTPNS--QSELRRLEYRMKWEEDFLAYLLKLQEKKPVIC 141
Query: 86 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 145
CGDLNV+H+EID+ +P K + GFT ER F L+ G ID
Sbjct: 142 CGDLNVAHQEIDLKNP---------------KTNRKNAGFTDEERACFTRALESG-FIDT 185
Query: 146 YRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 205
+R+ + +K+ + WS + + RIDYF+VS LK+++ ++ G
Sbjct: 186 FRYFYPDKEGVYSW-WSYRFRAREKNAGWRIDYFLVSPSLKEKLQDAKIHGE------IM 238
Query: 206 GSDHCPVSLEL 216
GSDHCPV L++
Sbjct: 239 GSDHCPVELDI 249
>gi|197303592|ref|ZP_03168630.1| hypothetical protein RUMLAC_02320 [Ruminococcus lactaris ATCC
29176]
gi|197297326|gb|EDY31888.1| exodeoxyribonuclease III [Ruminococcus lactaris ATCC 29176]
Length = 250
Score = 97.4 bits (241), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 65/195 (33%), Positives = 99/195 (50%), Gaps = 26/195 (13%)
Query: 23 LSALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGK 81
L +++ +GRVI EFE FY + Y PN+ + E R KW+ + ++ + K
Sbjct: 80 LGIEEHDQEGRVITCEFEDFYFVTVYTPNS--QSELARLDYRMKWEDDFRAYLKKLEKKK 137
Query: 82 PLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGR 141
P+I GDLNV+H+EID+ +P K + GFT ER +F +L G
Sbjct: 138 PVIVTGDLNVAHKEIDLKNP---------------KTNRKNAGFTDEERGKFTELLDAG- 181
Query: 142 LIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIEL 201
ID +R+ + +++ + WS + + RIDYF VSE LKDR+ ++ L
Sbjct: 182 FIDTFRYFYPDQEGIYSW-WSYRFSARAKNAGWRIDYFCVSECLKDRLADAKI------L 234
Query: 202 EGFYGSDHCPVSLEL 216
GSDHCP+ L+L
Sbjct: 235 TEVMGSDHCPIELDL 249
>gi|386748979|ref|YP_006222186.1| exodeoxyribonuclease III [Helicobacter cetorum MIT 00-7128]
gi|384555222|gb|AFI03556.1| exodeoxyribonuclease III [Helicobacter cetorum MIT 00-7128]
Length = 250
Score = 97.4 bits (241), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 65/192 (33%), Positives = 96/192 (50%), Gaps = 26/192 (13%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIW 85
+++ +GRVI EF+ FYL+N Y PN+ + + R W+ ++F+ KP+I
Sbjct: 84 EHDTEGRVITCEFDKFYLVNVYTPNS--QRALARLEYRMSWEIEFRKFLKALELKKPVIV 141
Query: 86 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 145
CGDLNV+H EID+ +P K + GF+ ER++F +L G ID
Sbjct: 142 CGDLNVAHNEIDLENP---------------KANRKNAGFSDEEREKFSELLNAG-FIDT 185
Query: 146 YRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 205
+R + K+ + WS + R RIDYF+ S LK I ++ E
Sbjct: 186 FRHFYPTKEKAYTW-WSYMQQSRERNIGWRIDYFLCSNSLKIEIKDAKI------YESIL 238
Query: 206 GSDHCPVSLELS 217
GSDHCPV LEL+
Sbjct: 239 GSDHCPVGLELN 250
>gi|256846719|ref|ZP_05552175.1| exodeoxyribonuclease III [Fusobacterium sp. 3_1_36A2]
gi|256717939|gb|EEU31496.1| exodeoxyribonuclease III [Fusobacterium sp. 3_1_36A2]
Length = 253
Score = 97.4 bits (241), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 68/201 (33%), Positives = 103/201 (51%), Gaps = 38/201 (18%)
Query: 23 LSALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGK 81
L +++ +GRVI EFE FY++ Y PN+ K+E R W+ ++++ K
Sbjct: 80 LGIEEHDKEGRVITLEFEKFYMVTVYTPNS--KDELLRLDYRMTWEDEFRKYLKNLEKKK 137
Query: 82 PLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGR 141
P++ CGDLNV+HEEID+ +P K + GFT ER +F +L G
Sbjct: 138 PVVVCGDLNVAHEEIDLKNP---------------KTNRRNAGFTDEERGKFTELLDSG- 181
Query: 142 LIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRM------RIDYFIVSEELKDRIIACEMQ 195
ID +R+ + +++ +SW YRG+ RIDYF+VS+ L+ ++ E+
Sbjct: 182 FIDTFRYFY--PNLEQVYSWWS-----YRGRARENNAGWRIDYFVVSKGLEKNLVDAEIH 234
Query: 196 GHGIELEGFYGSDHCPVSLEL 216
IE GSDHCPV L L
Sbjct: 235 TQ-IE-----GSDHCPVVLIL 249
>gi|239624599|ref|ZP_04667630.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
gi|239520985|gb|EEQ60851.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
Length = 251
Score = 97.4 bits (241), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 63/194 (32%), Positives = 100/194 (51%), Gaps = 32/194 (16%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG----KP 82
+++ +GRVI AEF +Y++ Y PN+ ++ R KW+ +F+ G KP
Sbjct: 85 EHDTEGRVITAEFPDYYVVTCYTPNS--QDGLARLDYRMKWE---DDFLAYLKGLEKKKP 139
Query: 83 LIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRL 142
+++CGDLNV+H+EID+ +P K + GFT ER +F +L G
Sbjct: 140 VVFCGDLNVAHKEIDLKNP---------------KTNRKNAGFTDEERGKFTDLLSAG-F 183
Query: 143 IDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELE 202
ID +R+ + + + + WS + + RIDYF VSE LKDR+++ + +
Sbjct: 184 IDTFRYFYPDAEGIYSW-WSYRFSARAKNAGWRIDYFCVSESLKDRLVSAAIHTEVM--- 239
Query: 203 GFYGSDHCPVSLEL 216
GSDHCPV L +
Sbjct: 240 ---GSDHCPVELVM 250
>gi|148927710|ref|ZP_01811154.1| exodeoxyribonuclease III Xth [candidate division TM7 genomosp.
GTL1]
gi|147886940|gb|EDK72466.1| exodeoxyribonuclease III Xth [candidate division TM7 genomosp.
GTL1]
Length = 266
Score = 97.4 bits (241), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 62/189 (32%), Positives = 95/189 (50%), Gaps = 25/189 (13%)
Query: 31 DGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWCGDL 89
+GRV+ AEFE FY++ Y PN+ +E R + WD +V Q KP+I+CGDL
Sbjct: 102 EGRVMAAEFEDFYIVTVYTPNSK-RELTRLTLREKHWDPAFLAYVKQLEKTKPVIFCGDL 160
Query: 90 NVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFL 149
NV+H E D++ P+ + G+ GFT ER+ F L G +D +R
Sbjct: 161 NVAHTEDDLARPD---------------TNHGEHGFTDEEREGFQKFLDAG-FVDTFRMF 204
Query: 150 HKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDH 209
+ + + W+ + R RIDYF+VS LK ++ + ++ GSDH
Sbjct: 205 TPKGNGHYTW-WTHWANARARNVGWRIDYFLVSHALKSKVKSAKIHA------DVMGSDH 257
Query: 210 CPVSLELSE 218
CP+S+EL +
Sbjct: 258 CPISIELGK 266
>gi|340347509|ref|ZP_08670617.1| exodeoxyribonuclease III [Prevotella dentalis DSM 3688]
gi|433653537|ref|YP_007297391.1| exodeoxyribonuclease III [Prevotella dentalis DSM 3688]
gi|339609205|gb|EGQ14080.1| exodeoxyribonuclease III [Prevotella dentalis DSM 3688]
gi|433304070|gb|AGB29885.1| exodeoxyribonuclease III [Prevotella dentalis DSM 3688]
Length = 266
Score = 97.4 bits (241), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 63/196 (32%), Positives = 100/196 (51%), Gaps = 31/196 (15%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNN----GWKEEENSFQRRRKWDKRIQEFVLQCS-GK 81
+++ +GRVI E+ FYL+ Y PN+ + + R W+ +E++++ K
Sbjct: 95 EHDHEGRVITLEYPDFYLITCYTPNSQDTIKGELKPRRLGYRMTWEDDFREYMMRLDKNK 154
Query: 82 PLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGR 141
P+I CGDLNV+HEE+D+ +P K + GFT ER++ +L G
Sbjct: 155 PVIMCGDLNVAHEEMDLKNP---------------KTNHNNAGFTDEEREKMTTLLGSG- 198
Query: 142 LIDAYRFLHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIE 200
+D++R L+ E+ +S WS + + RIDYFI S+ L+DRI ++
Sbjct: 199 FLDSFRMLYPEQ---VTYSWWSYRMRAREKNTGWRIDYFITSDRLRDRIADAKIHTE--- 252
Query: 201 LEGFYGSDHCPVSLEL 216
GSDHCPV L+L
Sbjct: 253 ---IMGSDHCPVELDL 265
>gi|237740967|ref|ZP_04571448.1| exodeoxyribonuclease III [Fusobacterium sp. 4_1_13]
gi|294784430|ref|ZP_06749721.1| exodeoxyribonuclease III [Fusobacterium sp. 3_1_27]
gi|229431011|gb|EEO41223.1| exodeoxyribonuclease III [Fusobacterium sp. 4_1_13]
gi|294488002|gb|EFG35357.1| exodeoxyribonuclease III [Fusobacterium sp. 3_1_27]
Length = 253
Score = 97.4 bits (241), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 68/201 (33%), Positives = 103/201 (51%), Gaps = 38/201 (18%)
Query: 23 LSALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGK 81
L +++ +GRVI EFE FY++ Y PN+ K+E R W+ ++++ K
Sbjct: 80 LGIEEHDKEGRVITLEFEKFYMVTVYTPNS--KDELLRLDYRMTWEDEFRKYLKNLEKKK 137
Query: 82 PLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGR 141
P++ CGDLNV+HEEID+ +P K + GFT ER +F +L G
Sbjct: 138 PVVVCGDLNVAHEEIDLKNP---------------KTNRRNAGFTDEERGKFTELLDSG- 181
Query: 142 LIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRM------RIDYFIVSEELKDRIIACEMQ 195
ID +R+ + +++ +SW YRG+ RIDYF+VS+ L+ ++ E+
Sbjct: 182 FIDTFRYFY--PNLEQVYSWWS-----YRGRARENNAGWRIDYFVVSKGLEKNLVDAEIH 234
Query: 196 GHGIELEGFYGSDHCPVSLEL 216
IE GSDHCPV L L
Sbjct: 235 TQ-IE-----GSDHCPVVLIL 249
>gi|344942649|ref|ZP_08781936.1| exodeoxyribonuclease III Xth [Methylobacter tundripaludum SV96]
gi|344259936|gb|EGW20208.1| exodeoxyribonuclease III Xth [Methylobacter tundripaludum SV96]
Length = 254
Score = 97.4 bits (241), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 67/198 (33%), Positives = 95/198 (47%), Gaps = 32/198 (16%)
Query: 23 LSALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC---- 78
+ ++++ +GRVI+AEFE F+LLN Y PN+G E R+ WD EF+ C
Sbjct: 83 IGIVEHDREGRVIVAEFENFFLLNVYVPNSG--EALARLDYRQTWDI---EFLAYCRQLQ 137
Query: 79 SGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILK 138
KPLI CGD NV+H+EID++ P+ PN G+T E F L
Sbjct: 138 KKKPLIACGDFNVAHQEIDIARPK------------PNYNK--SAGYTQVEIDGFSRFLD 183
Query: 139 EGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHG 198
G L+D +R H + +S+ G + R RIDY + S+ L +
Sbjct: 184 AG-LVDTFRHFHPDTVAYSWWSFRGG--ARARNVGWRIDYVLTSKTLAGNV------KQA 234
Query: 199 IELEGFYGSDHCPVSLEL 216
L GSDHCPV +E+
Sbjct: 235 FILPEISGSDHCPVGIEI 252
>gi|428281769|ref|YP_005563504.1| multifunctional DNA-repair enzyme [Bacillus subtilis subsp. natto
BEST195]
gi|291486726|dbj|BAI87801.1| multifunctional DNA-repair enzyme [Bacillus subtilis subsp. natto
BEST195]
Length = 252
Score = 97.4 bits (241), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 63/190 (33%), Positives = 100/190 (52%), Gaps = 28/190 (14%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIW 85
+++ +GRVI EFE +++ Y PN+ E + R +W++ + ++L+ KP+I
Sbjct: 85 EHDQEGRVITLEFENVFVITVYTPNSRRGLERIDY--RMQWEEALLSYILELDQKKPVIL 142
Query: 86 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 145
CGDLNV+H+EID+ +P K + GF+ ER+ F L+ G +D+
Sbjct: 143 CGDLNVAHQEIDLKNP---------------KANRNNAGFSDQEREAFTRFLEAG-FVDS 186
Query: 146 YRFLHKEKDMDCGFSWSGNPIG-KYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGF 204
+R H D++ +SW G + R RIDYF+VSE LK++I + +
Sbjct: 187 FR--HVYPDLEGAYSWWSYRAGARDRNIGWRIDYFVVSERLKEQIEDASISADVM----- 239
Query: 205 YGSDHCPVSL 214
GSDHCPV L
Sbjct: 240 -GSDHCPVEL 248
>gi|227486633|ref|ZP_03916949.1| exodeoxyribonuclease III [Anaerococcus lactolyticus ATCC 51172]
gi|227235345|gb|EEI85360.1| exodeoxyribonuclease III [Anaerococcus lactolyticus ATCC 51172]
Length = 275
Score = 97.4 bits (241), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 66/193 (34%), Positives = 94/193 (48%), Gaps = 35/193 (18%)
Query: 31 DGRVILAEFETFYLLNTYAPNNGWKEEENSFQR---RRKWDKRIQEFVLQC-SGKPLIWC 86
+GR+I EF+ FY + Y PN G N R R+ WDK +++ KP+I
Sbjct: 111 EGRIITLEFDNFYFTHVYTPNAG-----NGLTRLADRQVWDKLYADYLKSLDQNKPVIAA 165
Query: 87 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 146
GD NV+HEEID++HPE N E PGFT ER+ F +L +G D +
Sbjct: 166 GDFNVAHEEIDLAHPE------------NNHE---SPGFTDEEREGFTNLLAKG-FTDTF 209
Query: 147 RFLHKEKDMDCGFSWSGNPI--GKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGF 204
R +H ++ ++W + K RIDYF+VSE +KD I +M G
Sbjct: 210 RHIHGR--VEGKYTWWAQRVKTSKINNSGWRIDYFLVSERIKDLITNSDMIDSGER---- 263
Query: 205 YGSDHCPVSLELS 217
DH P+ LE++
Sbjct: 264 --QDHTPIVLEIN 274
>gi|421715822|ref|ZP_16155136.1| exodeoxyribonuclease III [Helicobacter pylori R036d]
gi|407214330|gb|EKE84179.1| exodeoxyribonuclease III [Helicobacter pylori R036d]
Length = 250
Score = 97.1 bits (240), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 62/191 (32%), Positives = 97/191 (50%), Gaps = 26/191 (13%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIW 85
+++ +GRV+ EFE+FYL+N Y PN+ ++ + R W+ ++F+ KP+I
Sbjct: 84 EHDKEGRVVTCEFESFYLVNVYTPNS--QQALSRLSYRMSWEVEFKKFLKALELKKPVIV 141
Query: 86 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 145
CGDLNV+H EID+ +P K + GF+ ER++F +L G ID
Sbjct: 142 CGDLNVAHNEIDLENP---------------KTNRKNAGFSDEEREKFSELLNAG-FIDT 185
Query: 146 YRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 205
+R+ + K+ + WS + + RIDYF+ S LK + + +
Sbjct: 186 FRYFYPNKEKAYTW-WSYMQQARDKDIGWRIDYFLCSNPLKTHL------KDALIYKDIL 238
Query: 206 GSDHCPVSLEL 216
GSDHCPV LEL
Sbjct: 239 GSDHCPVGLEL 249
>gi|428184721|gb|EKX53575.1| apurinic/apyrimidinic endonuclease family member in base excision
repair [Guillardia theta CCMP2712]
Length = 447
Score = 97.1 bits (240), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 67/195 (34%), Positives = 102/195 (52%), Gaps = 30/195 (15%)
Query: 31 DGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFV--LQCSGKPLIWCGD 88
+GR I EFE+F+++ TY PN+G K + F R + WD+++ E++ L+ SGKP+IWCGD
Sbjct: 274 EGRTITVEFESFFVVATYVPNSGEKLQRLEF-RTKLWDRKVVEYLKKLEASGKPVIWCGD 332
Query: 89 LNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRF 148
LNV+H + D+ + K G P ER F IL+EG +D +R
Sbjct: 333 LNVAHLDNDIWNVGAKHLVKSAGTTP-------------EERDSFSKILEEG-YVDCFRH 378
Query: 149 LHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEEL--KD---RIIACEMQGHGIELE 202
LH E D FS WS + + +R+DYF+ S+ L +D R++ ++
Sbjct: 379 LHGE-DAKGWFSYWSVRAGNRPWNRGLRLDYFVASKSLCSQDSLPRVVDADIHDE----- 432
Query: 203 GFYGSDHCPVSLELS 217
F DH +SL L+
Sbjct: 433 -FVAIDHAAISLTLA 446
>gi|303237381|ref|ZP_07323951.1| exodeoxyribonuclease III [Prevotella disiens FB035-09AN]
gi|302482768|gb|EFL45793.1| exodeoxyribonuclease III [Prevotella disiens FB035-09AN]
Length = 250
Score = 97.1 bits (240), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 63/197 (31%), Positives = 103/197 (52%), Gaps = 29/197 (14%)
Query: 23 LSALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GK 81
L +++ +GRVI E E FYL+ Y PN+ ++ + R +W+ Q ++ + K
Sbjct: 80 LGIEEHDHEGRVITLEMENFYLVTCYTPNS--QDGLKRLEYRMRWEDDFQTYIKRLDEKK 137
Query: 82 PLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGR 141
P+I CGDLNV+HEEID+ +P K + GF+ ER + L +G
Sbjct: 138 PVIVCGDLNVAHEEIDLKNP---------------KTNRKNAGFSDEERAKMTQFLGKG- 181
Query: 142 LIDAYRFLHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIE 200
ID++R L+ E+ +S WS + + RIDYF++S+ L+ +++ ++
Sbjct: 182 FIDSFRTLYPEQ---VTYSWWSYRFKAREKNAGWRIDYFLLSDRLRAQLVDAKIHTE--- 235
Query: 201 LEGFYGSDHCPVSLELS 217
YGSDHCPV +EL+
Sbjct: 236 ---VYGSDHCPVEVELN 249
>gi|352518551|ref|YP_004887868.1| exodeoxyribonuclease [Tetragenococcus halophilus NBRC 12172]
gi|348602658|dbj|BAK95704.1| exodeoxyribonuclease [Tetragenococcus halophilus NBRC 12172]
Length = 275
Score = 97.1 bits (240), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 62/193 (32%), Positives = 97/193 (50%), Gaps = 33/193 (17%)
Query: 29 EPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCG 87
+ +GR+I EF ++ Y PN G + ++R WD++ +E+++ KP+I G
Sbjct: 109 DQEGRIITLEFPNCFVTQVYTPNAGGNLDR--LEKREAWDEKYREYLVALDEQKPVIASG 166
Query: 88 DLNVSHEEIDVSHPE--FFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 145
D NV+H EID++HP+ F+A GFT ER F +L G D
Sbjct: 167 DYNVAHTEIDLAHPDRNHFSA-----------------GFTDEERTNFTTLLNNG-FADT 208
Query: 146 YRFLHKEKDMDCGFSWSGNPI--GKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEG 203
+R++H D++ +SW G + K RIDYF+VS+ LK+++I EM G
Sbjct: 209 FRYVH--GDIEGHYSWWGQRVKTSKINNSGWRIDYFLVSDRLKNQVITSEMIDSGKR--- 263
Query: 204 FYGSDHCPVSLEL 216
DH P+ LE+
Sbjct: 264 ---QDHTPIFLEV 273
>gi|168205412|ref|ZP_02631417.1| exodeoxyribonuclease III [Clostridium perfringens E str. JGS1987]
gi|170663003|gb|EDT15686.1| exodeoxyribonuclease III [Clostridium perfringens E str. JGS1987]
Length = 250
Score = 97.1 bits (240), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 63/189 (33%), Positives = 98/189 (51%), Gaps = 28/189 (14%)
Query: 28 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGKP-LIWC 86
++ +GRVI EFE F+++ Y PN+ + E + R +W+ + ++L+ S K ++ C
Sbjct: 85 HDKEGRVITLEFEDFFMVTVYTPNS--QSELARLEYRMEWEDDFRNYLLELSSKKGVVVC 142
Query: 87 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 146
GDLNV+H+EID+ +P K + GFT ER +F +L G ID +
Sbjct: 143 GDLNVAHKEIDLKNP---------------KTNRKNAGFTDEERDKFSTLLSSG-FIDTF 186
Query: 147 RFLHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 205
R+ + D++ +S WS + RIDYF+VS L+DRI + +
Sbjct: 187 RYFN--PDLEGIYSWWSYRFNARKNNAGWRIDYFLVSNNLEDRIKEAFIDTEIL------ 238
Query: 206 GSDHCPVSL 214
GSDHCPV L
Sbjct: 239 GSDHCPVKL 247
>gi|384108936|ref|ZP_10009823.1| exodeoxyribonuclease III [Treponema sp. JC4]
gi|383869507|gb|EID85119.1| exodeoxyribonuclease III [Treponema sp. JC4]
Length = 276
Score = 97.1 bits (240), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 67/194 (34%), Positives = 100/194 (51%), Gaps = 35/194 (18%)
Query: 29 EPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWCG 87
+ +GR+I EF+ FY +N Y PN+G + + R+ WD +++ K +I CG
Sbjct: 110 DDEGRLIALEFDNFYFVNVYTPNSG--DGLKRLKERQLWDSLYADYLSSLDQKKAVIACG 167
Query: 88 DLNVSHEEIDVSHP--EFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 145
D NV+H+EID+++P F+A GFT ER+ F +L +G D+
Sbjct: 168 DFNVAHKEIDLANPASNHFSA-----------------GFTDEEREGFTNLLAKG-FTDS 209
Query: 146 YRFLHKE-KDMDCGFSWSGNPI--GKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELE 202
+RF+H + KD+ +SW G I K RIDYFIVS+ +KD+I EM G
Sbjct: 210 FRFIHGDVKDI---YSWWGQRIKTSKINNSGWRIDYFIVSDRIKDKIQKSEMIDSGPR-- 264
Query: 203 GFYGSDHCPVSLEL 216
DH P+ LE+
Sbjct: 265 ----QDHTPILLEI 274
>gi|451343821|ref|ZP_21912887.1| exodeoxyribonuclease III (xth) [Eggerthia catenaformis OT 569 = DSM
20559]
gi|449337396|gb|EMD16558.1| exodeoxyribonuclease III (xth) [Eggerthia catenaformis OT 569 = DSM
20559]
Length = 251
Score = 97.1 bits (240), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 63/192 (32%), Positives = 97/192 (50%), Gaps = 26/192 (13%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIW 85
+++ +GRV+ EF+ FY + Y PN+ K E R KW+ ++ + + KP+I
Sbjct: 84 EHDQEGRVLTLEFDHFYFVGCYTPNS--KRELARLDYRMKWEDDFLAYLDKLNKTKPVIL 141
Query: 86 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 145
CGDLNV+H+EID+ +P + GF+ ER++ +L G ID
Sbjct: 142 CGDLNVAHQEIDLKNPS---------------SNHKNAGFSDEEREKMTQLLSHG-YIDT 185
Query: 146 YRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 205
+R+ + ++ D WS + R RIDYFI SE LKD++ + +
Sbjct: 186 FRYFYPDQ-TDAYSWWSYMFKARERNAGWRIDYFITSERLKDKLKDAYIYSDIL------ 238
Query: 206 GSDHCPVSLELS 217
GSDHCPV LE+S
Sbjct: 239 GSDHCPVGLEIS 250
>gi|32024|emb|CAA42437.1| HAP1 [Homo sapiens]
Length = 318
Score = 97.1 bits (240), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 62/192 (32%), Positives = 104/192 (54%), Gaps = 25/192 (13%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQ-CSGKPLIW 85
+++ +GRVI+AEF++F L+ Y PN G + R++WD+ ++F+ S KPL+
Sbjct: 150 EHDQEGRVIVAEFDSFVLVTAYVPNAG--RGLVRLEYRQRWDEAFRKFLKGLASRKPLVL 207
Query: 86 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 145
CGDLNV+HEEID+ +P+ NK++ GFT E + FG +L+ L D+
Sbjct: 208 CGDLNVAHEEIDLRNPKG------------NKKN---AGFTPQEAQGFGELLQAVPLADS 252
Query: 146 YRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 205
+R L+ F W+ + + R+DYF++S L + +++ +
Sbjct: 253 FRHLYPNTPYAYTF-WTYMMNARSKNVGWRLDYFLLSHSLLPALCDSKIRSKAL------ 305
Query: 206 GSDHCPVSLELS 217
GSDHCP++L L+
Sbjct: 306 GSDHCPITLYLA 317
>gi|325970995|ref|YP_004247186.1| exodeoxyribonuclease III Xth [Sphaerochaeta globus str. Buddy]
gi|324026233|gb|ADY12992.1| exodeoxyribonuclease III Xth [Sphaerochaeta globus str. Buddy]
Length = 250
Score = 97.1 bits (240), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 63/188 (33%), Positives = 95/188 (50%), Gaps = 26/188 (13%)
Query: 31 DGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQ-CSGKPLIWCGDL 89
+GR + AEFE FY++ Y PN+ +E R WD+ + +V S KP+I CGDL
Sbjct: 87 EGRTVTAEFEQFYVVCCYTPNS--QEALARLDTRMDWDEAFRSYVCSLASMKPVIICGDL 144
Query: 90 NVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFL 149
NV+H+ ID+ HP K + G++I ER +F ++L G ID +R+L
Sbjct: 145 NVAHQSIDLRHP---------------KANERNAGYSIEERNQFTSLLDAG-FIDTFRYL 188
Query: 150 HKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDH 209
+ ++ + WS + RIDY++VSEEL+ I+ + GSDH
Sbjct: 189 YPNREGIYSW-WSYRFKARENNAGWRIDYWLVSEELRQSILDSTIDTET------QGSDH 241
Query: 210 CPVSLELS 217
PV L L+
Sbjct: 242 APVILYLN 249
>gi|116493341|ref|YP_805076.1| exonuclease III [Pediococcus pentosaceus ATCC 25745]
gi|116103491|gb|ABJ68634.1| Exonuclease III [Pediococcus pentosaceus ATCC 25745]
Length = 251
Score = 97.1 bits (240), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 60/195 (30%), Positives = 98/195 (50%), Gaps = 26/195 (13%)
Query: 23 LSALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-K 81
L +++ +GR+I EFE FY++ Y PN+ + + + R WD + ++ Q + K
Sbjct: 80 LGIEEHDQEGRIITLEFEKFYVITCYTPNS--QPKLKRLEYRMAWDDAFRAYIDQLNQHK 137
Query: 82 PLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGR 141
P+I+CGDLNV+H+EID+ + +K + GFT ER +F +L G
Sbjct: 138 PVIFCGDLNVAHQEIDLKN---------------DKTNHKNAGFTDEERNKFTQLLNSG- 181
Query: 142 LIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIEL 201
D YR+ + K+ + WS + RIDYF+ S+ L ++ ++
Sbjct: 182 FTDTYRYFYPSKEGVYSW-WSYRFNARANNAGWRIDYFVSSKALDQKLTDAQIHTE---- 236
Query: 202 EGFYGSDHCPVSLEL 216
+GSDHCPV L+L
Sbjct: 237 --IFGSDHCPVELDL 249
>gi|347531556|ref|YP_004838319.1| exodeoxyribonuclease [Roseburia hominis A2-183]
gi|345501704|gb|AEN96387.1| exodeoxyribonuclease [Roseburia hominis A2-183]
Length = 255
Score = 97.1 bits (240), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 68/199 (34%), Positives = 97/199 (48%), Gaps = 28/199 (14%)
Query: 20 HFLLSALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS 79
H+ + +++ +GRVI EF FY++ Y PN+ + E R +W+ ++
Sbjct: 77 HYGIGIPQHDTEGRVITLEFPDFYMVTCYTPNS--QNELARLSYRMEWEDAFLSYLKGLD 134
Query: 80 -GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILK 138
KPLI CGDLNV+HEEID+ +P K + GFT ER + A+L
Sbjct: 135 RNKPLILCGDLNVAHEEIDLKNP---------------KTNRKNAGFTDEERTKMTALLS 179
Query: 139 EGRLIDAYRFLHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGH 197
G D +R H D + +S WS + + RIDYFI S L DR++
Sbjct: 180 AG-FTDTFR--HFYPDTEGIYSWWSYRFHAREKNAGWRIDYFITSSALDDRLVDA----- 231
Query: 198 GIELEGFYGSDHCPVSLEL 216
GI L GSDHCPV+L +
Sbjct: 232 GI-LTDVTGSDHCPVTLTV 249
>gi|429741842|ref|ZP_19275492.1| exodeoxyribonuclease III [Porphyromonas catoniae F0037]
gi|429158090|gb|EKY00657.1| exodeoxyribonuclease III [Porphyromonas catoniae F0037]
Length = 250
Score = 97.1 bits (240), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 60/190 (31%), Positives = 96/190 (50%), Gaps = 26/190 (13%)
Query: 28 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIWC 86
++ +GRVI E+ FYL+ Y PN+ +++ R W+ + ++++ K P+I C
Sbjct: 85 HDTEGRVITLEYTDFYLVTVYVPNS--QDDLRRLGYRMTWEDDFRAYLVELDKKKPVIVC 142
Query: 87 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 146
GDLNV+H+EID+ +P K + GFT ER +F +L G ID +
Sbjct: 143 GDLNVAHQEIDLKNP---------------KSNRRNAGFTDEERGKFQELLDAG-FIDTF 186
Query: 147 RFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYG 206
R+ H ++ D WS + R RIDYF+ S+ L ++ + ++ +G
Sbjct: 187 RYFHPDQ-RDIYSWWSYRFKARERNSGWRIDYFVTSQRLAPQLASAKIHTE------IFG 239
Query: 207 SDHCPVSLEL 216
SDHCPV L L
Sbjct: 240 SDHCPVELVL 249
>gi|451821030|ref|YP_007457231.1| exodeoxyribonuclease ExoA [Clostridium saccharoperbutylacetonicum
N1-4(HMT)]
gi|451787009|gb|AGF57977.1| exodeoxyribonuclease ExoA [Clostridium saccharoperbutylacetonicum
N1-4(HMT)]
Length = 252
Score = 97.1 bits (240), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 65/193 (33%), Positives = 101/193 (52%), Gaps = 28/193 (14%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIW 85
+++ +GRVI AE++ FYL+ Y PN+ K+ R W+ ++++ + KP+I
Sbjct: 85 EHDNEGRVITAEYDDFYLVTVYTPNS--KQALERLDYRMVWEDVFRKYLKELEEKKPVIV 142
Query: 86 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 145
CGDLNV+H+EID+ +P K + GFT ER + +L+ G ID
Sbjct: 143 CGDLNVAHKEIDLKNP---------------KANRRNAGFTDEERDKMSELLEAG-FIDT 186
Query: 146 YRFLHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGF 204
YR H D++ +S WS + RIDYF+ SE LKD++ A ++ +
Sbjct: 187 YR--HFYPDVEGVYSWWSYRFNARANNAGWRIDYFLTSESLKDKLEAAKIHTEVM----- 239
Query: 205 YGSDHCPVSLELS 217
GSDHCPV L ++
Sbjct: 240 -GSDHCPVELVIN 251
>gi|260808574|ref|XP_002599082.1| hypothetical protein BRAFLDRAFT_225146 [Branchiostoma floridae]
gi|229284358|gb|EEN55094.1| hypothetical protein BRAFLDRAFT_225146 [Branchiostoma floridae]
Length = 272
Score = 97.1 bits (240), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 70/198 (35%), Positives = 102/198 (51%), Gaps = 37/198 (18%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIW 85
+++ +GRVI AEF+ FY++ Y PN G R WD+ ++ + K P++
Sbjct: 102 EHDDEGRVITAEFDDFYMVTAYVPNAG--RGLVRLDYRGTWDEAFTAYLKKLDKKKPVVL 159
Query: 86 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 145
CGDLNV+H EID+ +P+ NK PGFT ER+ F +L EG D+
Sbjct: 160 CGDLNVAHNEIDLKNPK------------GNKNK--TPGFTDKEREGFTTLLDEG-FKDS 204
Query: 146 YRFLHKEKDMDCGFSWSGNPIGKYRGKRM--RIDYFIVSEELK----DRIIACEMQGHGI 199
YR L+ E + DC WS +G R K + R+DYF++S+ L D +I E+
Sbjct: 205 YRELYPE-ETDCYTFWS--YMGGARAKNVGWRLDYFVLSDRLMPQLCDNVIRSEVM---- 257
Query: 200 ELEGFYGSDHCPVSLELS 217
GSDHCP+ L L+
Sbjct: 258 ------GSDHCPIVLLLA 269
>gi|164688495|ref|ZP_02212523.1| hypothetical protein CLOBAR_02140 [Clostridium bartlettii DSM
16795]
gi|164602908|gb|EDQ96373.1| exodeoxyribonuclease III [Clostridium bartlettii DSM 16795]
Length = 252
Score = 97.1 bits (240), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 60/193 (31%), Positives = 103/193 (53%), Gaps = 26/193 (13%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIW 85
+++ +GRVI EF+ FY + Y PN+ + E R KW+ ++++L+ S K +I
Sbjct: 84 EHDKEGRVITLEFDNFYFVTVYTPNS--QSELKRLDYRMKWEDDFRKYLLKLNSKKGVIV 141
Query: 86 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 145
CGDLNV+H+EID+ +P K + GFT ER++F +L+ G ID
Sbjct: 142 CGDLNVAHKEIDLKNP---------------KTNRKNAGFTDQEREKFTELLESG-FIDT 185
Query: 146 YRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 205
YR + +K+ + WS + + RIDYF S++L++ +++ ++ +
Sbjct: 186 YRHFNPDKEGIYSW-WSYRFKAREKNAGWRIDYFCASKDLENNLVSADIHTQIL------ 238
Query: 206 GSDHCPVSLELSE 218
GSDHCP+ L + +
Sbjct: 239 GSDHCPIELVVKD 251
>gi|34763743|ref|ZP_00144662.1| Exodeoxyribonuclease III [Fusobacterium nucleatum subsp. vincentii
ATCC 49256]
gi|27886479|gb|EAA23735.1| Exodeoxyribonuclease III [Fusobacterium nucleatum subsp. vincentii
ATCC 49256]
Length = 253
Score = 97.1 bits (240), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 67/201 (33%), Positives = 103/201 (51%), Gaps = 38/201 (18%)
Query: 23 LSALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGK 81
L +++ +GRVI EFE FY++ Y PN+ K+E R W+ ++++ K
Sbjct: 80 LGIEEHDKEGRVITLEFEKFYMVTVYTPNS--KDELLRLDYRMTWEDEFRKYLKNLEKKK 137
Query: 82 PLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGR 141
P++ CGDLNV+HEEID+ +P K + GFT ER +F +L G
Sbjct: 138 PVVVCGDLNVAHEEIDLKNP---------------KTNRRNAGFTDEERGKFTELLDSG- 181
Query: 142 LIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRM------RIDYFIVSEELKDRIIACEMQ 195
+D +R+ + +++ +SW YRG+ RIDYF+VS+ L+ ++ E+
Sbjct: 182 FVDTFRYFY--PNLEQVYSWWS-----YRGRARENNAGWRIDYFVVSKGLEKNLVDAEIH 234
Query: 196 GHGIELEGFYGSDHCPVSLEL 216
IE GSDHCPV L L
Sbjct: 235 TQ-IE-----GSDHCPVVLIL 249
>gi|238018561|ref|ZP_04598987.1| hypothetical protein VEIDISOL_00388 [Veillonella dispar ATCC 17748]
gi|237865032|gb|EEP66322.1| hypothetical protein VEIDISOL_00388 [Veillonella dispar ATCC 17748]
Length = 251
Score = 97.1 bits (240), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 61/191 (31%), Positives = 99/191 (51%), Gaps = 26/191 (13%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIW 85
+++ +GRVI AE++ FYL+ Y PN+ + E + R W+ + ++L+ K P+I
Sbjct: 84 EHDQEGRVITAEYDNFYLVCCYTPNS--QRELARLEYRMAWEDAFRNYLLELDKKKPVIL 141
Query: 86 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 145
CGDLNV+H+EID+ +P K + GF+ ER + +L G D
Sbjct: 142 CGDLNVAHQEIDLKNP---------------KTNRKNAGFSDEERAKMTELLGAG-FTDT 185
Query: 146 YRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 205
+R L+ + + + WS + R RIDYFI S+ L D+I ++ + +
Sbjct: 186 FRHLYPDAIEEYSW-WSYMGKARERNTGWRIDYFITSKRLDDKIQEAKIH------QQIF 238
Query: 206 GSDHCPVSLEL 216
GSDHCPV L++
Sbjct: 239 GSDHCPVELDI 249
>gi|302783529|ref|XP_002973537.1| hypothetical protein SELMODRAFT_99746 [Selaginella moellendorffii]
gi|300158575|gb|EFJ25197.1| hypothetical protein SELMODRAFT_99746 [Selaginella moellendorffii]
Length = 306
Score = 97.1 bits (240), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 65/194 (33%), Positives = 100/194 (51%), Gaps = 27/194 (13%)
Query: 23 LSALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-K 81
L +++ +GRV+ AEF+TF+L++ Y PN+G + E ++ R +WD ++L+ K
Sbjct: 132 LGISQHDGEGRVVTAEFDTFFLVSVYVPNSGQRLERLTY-RTTEWDPAFSTYLLELEKRK 190
Query: 82 PLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGR 141
P+I GDLN +HEEID+ P+ NK GFT ER F +
Sbjct: 191 PVIVTGDLNCAHEEIDIYDPD------------GNKR---SAGFTSEERTSFQTNFIDKG 235
Query: 142 LIDAYRFLHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIE 200
L+D +R K+ + GF+ WS + + K R+DYF+VS+ L C + +
Sbjct: 236 LVDTFR---KQHPLAVGFTYWSYRSNARPQNKGWRLDYFLVSQGL-----VCSVADSYV- 286
Query: 201 LEGFYGSDHCPVSL 214
L GSDHCP+ L
Sbjct: 287 LPQLDGSDHCPIGL 300
>gi|134045625|ref|YP_001097111.1| exodeoxyribonuclease III Xth [Methanococcus maripaludis C5]
gi|132663250|gb|ABO34896.1| exodeoxyribonuclease III Xth [Methanococcus maripaludis C5]
Length = 249
Score = 96.7 bits (239), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 67/189 (35%), Positives = 95/189 (50%), Gaps = 35/189 (18%)
Query: 31 DGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIWCGDL 89
+GRVI +F+ +YL+N Y PN+ + + R+KWD+ +V K P+I+CGDL
Sbjct: 88 EGRVITLKFDEYYLVNVYTPNS--QRGLTRLKYRQKWDQDFLNYVKTLENKKPVIFCGDL 145
Query: 90 NVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFL 149
NV+H+EID+ +P K + GFT ERK F I+ G +D +R
Sbjct: 146 NVAHKEIDLKNP---------------KTNVKNAGFTPEERKGFDNIVNSG-FLDTFREF 189
Query: 150 HKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSE----ELKDRIIACEMQGHGIELEGFY 205
+KE D +S+ N + R RIDYF +SE LKD I E+
Sbjct: 190 NKEPDNYSWWSYRFN--ARARNIGWRIDYFCISESLRNNLKDAFIMSEIM---------- 237
Query: 206 GSDHCPVSL 214
GSDHCPV +
Sbjct: 238 GSDHCPVGI 246
>gi|110801105|ref|YP_695823.1| exodeoxyribonuclease III [Clostridium perfringens ATCC 13124]
gi|110675752|gb|ABG84739.1| exodeoxyribonuclease III [Clostridium perfringens ATCC 13124]
Length = 250
Score = 96.7 bits (239), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 62/189 (32%), Positives = 97/189 (51%), Gaps = 28/189 (14%)
Query: 28 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGKP-LIWC 86
++ +GRVI EFE +++ Y PN+ + E + R +W+ + ++L+ S K ++ C
Sbjct: 85 HDKEGRVITLEFEDLFMVTVYTPNS--QSELARLEYRMEWEDDFRNYLLELSSKKGVVVC 142
Query: 87 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 146
GDLNV+H+EID+ +P K + GFT ER +F +L G ID +
Sbjct: 143 GDLNVAHKEIDLKNP---------------KTNRKNAGFTDEERDKFSTLLSSG-FIDTF 186
Query: 147 RFLHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 205
R+ + D++ +S WS + RIDYF+VS L+DRI + +
Sbjct: 187 RYFN--PDLEGVYSWWSYRFNARKNNAGWRIDYFLVSNNLEDRIKEASIDTEIL------ 238
Query: 206 GSDHCPVSL 214
GSDHCPV L
Sbjct: 239 GSDHCPVKL 247
>gi|332797757|ref|YP_004459257.1| exodeoxyribonuclease III Xth [Acidianus hospitalis W1]
gi|332695492|gb|AEE94959.1| exodeoxyribonuclease III Xth [Acidianus hospitalis W1]
Length = 247
Score = 96.7 bits (239), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 66/190 (34%), Positives = 98/190 (51%), Gaps = 27/190 (14%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGKPLIWC 86
+Y+ +GRVI+ E+ +Y++NTY PN G E + +++ ++FV+ KP I C
Sbjct: 84 EYDSEGRVIILEYPEYYVINTYFPNAG--EGLKRLDFKLSFNRDFEKFVISLK-KPCIIC 140
Query: 87 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 146
GD NV+H+EID++ P K++ GFT ER+ F L G +D Y
Sbjct: 141 GDFNVAHQEIDIARP---------------KDNVNHAGFTPQEREWFSHFLSLG-YVDTY 184
Query: 147 RFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYG 206
R KE +S+ + K G RIDY +VSE LK R+I ++ LE G
Sbjct: 185 RMFVKEGGHYSWWSYRFHAREKNIG--WRIDYCVVSESLKGRVIKADI------LEKVMG 236
Query: 207 SDHCPVSLEL 216
SDH P+ LE+
Sbjct: 237 SDHAPILLEI 246
>gi|420469789|ref|ZP_14968500.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-11]
gi|393086835|gb|EJB87505.1| exodeoxyribonuclease III [Helicobacter pylori Hp H-11]
Length = 250
Score = 96.7 bits (239), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 63/191 (32%), Positives = 97/191 (50%), Gaps = 26/191 (13%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIW 85
+++ +GRVI EFE+FYL+N Y PN+ ++ + R W+ ++F+ KP+I
Sbjct: 84 EHDKEGRVITCEFESFYLVNVYTPNS--QQALSRLSYRMSWEVEFKKFLKALELKKPVIV 141
Query: 86 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 145
CGDLNV+H EID+ +P K + GF+ ER++F +L G ID
Sbjct: 142 CGDLNVAHNEIDLENP---------------KTNRKNAGFSDEEREKFSELLNAG-FIDT 185
Query: 146 YRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 205
+R+ + K+ + WS + + RIDYF+ S LK + + +
Sbjct: 186 FRYFYPNKEKAYTW-WSYMQQARDKDIGWRIDYFLCSNPLKTCL------KDALIYKDIL 238
Query: 206 GSDHCPVSLEL 216
GSDHCPV LEL
Sbjct: 239 GSDHCPVGLEL 249
>gi|150017217|ref|YP_001309471.1| exodeoxyribonuclease III Xth [Clostridium beijerinckii NCIMB 8052]
gi|149903682|gb|ABR34515.1| exodeoxyribonuclease III Xth [Clostridium beijerinckii NCIMB 8052]
Length = 254
Score = 96.7 bits (239), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 66/193 (34%), Positives = 105/193 (54%), Gaps = 28/193 (14%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIW 85
+++ +GRV+ E+ FYL+N Y PN+ K+ R W+ ++++ + KP+I
Sbjct: 87 EHDNEGRVLTLEYGNFYLVNVYTPNS--KQGLERLDYRMVWEDVFRKYLKELEKNKPVII 144
Query: 86 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 145
CGDLNV+H+EID+ +P N+++ GFT ER + +L+ G ID
Sbjct: 145 CGDLNVAHKEIDLKNP------------TSNRKN---AGFTDEERSKISELLEAG-FIDT 188
Query: 146 YRFLHKEKD-MDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGF 204
YR+ + +K+ M +S+ N G RIDYF+VSE LKD+ ++ I +E
Sbjct: 189 YRYFYPDKEGMYSWWSYRFNARANNAG--WRIDYFLVSESLKDK-----LEDAKIHME-V 240
Query: 205 YGSDHCPVSLELS 217
GSDHCPV L ++
Sbjct: 241 TGSDHCPVELTIN 253
>gi|332024107|gb|EGI64323.1| Recombination repair protein 1 [Acromyrmex echinatior]
Length = 356
Score = 96.7 bits (239), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 63/196 (32%), Positives = 102/196 (52%), Gaps = 26/196 (13%)
Query: 23 LSALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGK 81
L+ ++ +GR+I EF F+++N Y PN G K + +R +W+K ++ + + K
Sbjct: 185 LNDSTFDTEGRIITVEFPEFFVINVYVPNAGQKLV--TLPKRLEWNKLFKKHIEELDQKK 242
Query: 82 PLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGR 141
P+I CGD+NV+H+EID+ +P K + GFT ER L G
Sbjct: 243 PVIICGDMNVAHQEIDLKNP---------------KTNTKNAGFTKEERNDMTDFLAAG- 286
Query: 142 LIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIEL 201
ID +R L+ E + F WS + + R+DYF++SE +K+++ C+ I
Sbjct: 287 FIDTFRSLYPEIEGAYTF-WSYFANARSKNIGWRLDYFLISERIKNKV--CD----NIIR 339
Query: 202 EGFYGSDHCPVSLELS 217
+ YGSDHCPV L ++
Sbjct: 340 KDVYGSDHCPVILYIN 355
>gi|409045646|gb|EKM55126.1| hypothetical protein PHACADRAFT_120160 [Phanerochaete carnosa
HHB-10118-sp]
Length = 347
Score = 96.7 bits (239), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 62/192 (32%), Positives = 100/192 (52%), Gaps = 31/192 (16%)
Query: 32 GRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIWCGDLN 90
GR++ EFE Y++ TY N G + +R W+K ++ K P+IW GDLN
Sbjct: 172 GRILTLEFENVYVVGTYVVNAG--TGLKTLPEKRTWNKHFHAYIHSLDAKKPVIWTGDLN 229
Query: 91 VSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQ-PGFTIAERKRFGAIL---KEG--RLID 144
V+ E+D+++P K +W + PG+T E F +L +EG ++ID
Sbjct: 230 VAPTELDLANP---------------KPNWNKTPGYTEDETSAFKRVLGPEEEGQKKMID 274
Query: 145 AYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGF 204
+R LH + FS+ N + +G R+D+F+VSE L +++ CE++ E +
Sbjct: 275 VWRHLHPKLRHYTYFSYRQN--CRSKGVGWRLDHFVVSERLLEKVDMCEIRS-----EIY 327
Query: 205 YGSDHCPVSLEL 216
SDHCPV+LE+
Sbjct: 328 GASDHCPVTLEI 339
>gi|302787589|ref|XP_002975564.1| hypothetical protein SELMODRAFT_103806 [Selaginella moellendorffii]
gi|300156565|gb|EFJ23193.1| hypothetical protein SELMODRAFT_103806 [Selaginella moellendorffii]
Length = 306
Score = 96.7 bits (239), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 64/194 (32%), Positives = 98/194 (50%), Gaps = 27/194 (13%)
Query: 23 LSALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-K 81
L +++ +GRV+ AEF+TF+L++ Y PN+G + E ++ R +WD ++L+ K
Sbjct: 132 LGISQHDGEGRVVTAEFDTFFLVSVYVPNSGQRLERLTY-RTTEWDPAFSTYLLELEKRK 190
Query: 82 PLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGR 141
P+I GDLN +HEEID+ P+ NK GFT ER F +
Sbjct: 191 PVIVTGDLNCAHEEIDIYDPD------------GNKR---SAGFTCEERTSFQTNFIDKG 235
Query: 142 LIDAYRFLHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIE 200
L+D +R K+ + GF+ WS + + K R+DYF+VS+ L +
Sbjct: 236 LVDTFR---KQHPLAVGFTYWSYRSNARPQNKGWRLDYFLVSQGLVSNV------ADSYV 286
Query: 201 LEGFYGSDHCPVSL 214
L GSDHCP+ L
Sbjct: 287 LPQLDGSDHCPIGL 300
>gi|373851837|ref|ZP_09594637.1| exodeoxyribonuclease III Xth [Opitutaceae bacterium TAV5]
gi|391230369|ref|ZP_10266575.1| exodeoxyribonuclease III [Opitutaceae bacterium TAV1]
gi|372474066|gb|EHP34076.1| exodeoxyribonuclease III Xth [Opitutaceae bacterium TAV5]
gi|391220030|gb|EIP98450.1| exodeoxyribonuclease III [Opitutaceae bacterium TAV1]
Length = 251
Score = 96.7 bits (239), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 62/190 (32%), Positives = 95/190 (50%), Gaps = 27/190 (14%)
Query: 28 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWC 86
++ +GRV+ AEF FYL+N Y PN + E RR+W+ ++ KP++ C
Sbjct: 87 HDNEGRVLTAEFADFYLVNVYVPNA--QHELVRLPYRRRWNADFLSYLRSLEKKKPVVVC 144
Query: 87 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 146
GD+NV+H+EID++ P KE+ G GF+ ER+ F +L+ G +D +
Sbjct: 145 GDMNVAHQEIDLARP---------------KENVGNAGFSNEEREDFSTMLRAG-FVDTF 188
Query: 147 RFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYG 206
R K +++ G+ G RIDYF+ S L+ R+ ++ G
Sbjct: 189 REFEKGPGHYSWWTYRAGARGRNIG--WRIDYFLASAALRPRLKRAWIE------PTVMG 240
Query: 207 SDHCPVSLEL 216
SDHCPV LEL
Sbjct: 241 SDHCPVGLEL 250
>gi|304439168|ref|ZP_07399086.1| exodeoxyribonuclease III [Peptoniphilus duerdenii ATCC BAA-1640]
gi|304372300|gb|EFM25888.1| exodeoxyribonuclease III [Peptoniphilus duerdenii ATCC BAA-1640]
Length = 254
Score = 96.7 bits (239), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 61/192 (31%), Positives = 105/192 (54%), Gaps = 26/192 (13%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIW 85
+++ +GRVI E+ +Y + Y PN+ + R +W++ E++ + KP++
Sbjct: 87 EHDKEGRVITLEYPEYYFITCYTPNS--QRGLARLDYRMEWEEAFLEYLNRLDEVKPVVL 144
Query: 86 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 145
CGDLNV+H EID+ +PE N+++ GF+ ER +F +L+ G D
Sbjct: 145 CGDLNVAHNEIDLKNPE------------SNRKN---AGFSDEERDKFTKLLEAG-YTDT 188
Query: 146 YRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 205
+R+L+ +K+ + + WS + R RIDYF+VS+ L+D+I+ + +
Sbjct: 189 FRYLYPDKEDEYSW-WSYFRQARDRNIGWRIDYFVVSKVLEDKIVEASIH------QNIM 241
Query: 206 GSDHCPVSLELS 217
GSDHCPVS+EL+
Sbjct: 242 GSDHCPVSVELN 253
>gi|346473687|gb|AEO36688.1| hypothetical protein [Amblyomma maculatum]
Length = 350
Score = 96.7 bits (239), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 65/192 (33%), Positives = 102/192 (53%), Gaps = 26/192 (13%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGKP-LIW 85
K++ +GRVI AEF+ FYL+ Y PN G K + R +WDK + ++ + K ++
Sbjct: 183 KHDKEGRVITAEFDKFYLVAVYVPNAGKKLVRLDY--RMEWDKDFRAYLKELEAKKHVVL 240
Query: 86 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 145
CGD+NV+H+EID+++P+ NK++ GFT ER F A+L+ G +D+
Sbjct: 241 CGDMNVAHQEIDLANPK------------TNKKN---AGFTQEERDGFTALLESG-FVDS 284
Query: 146 YRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 205
+R L+ +K F W+ + + R+DYFI+S+ L I +
Sbjct: 285 FRHLYPDKKGAYTF-WTYMMNARAKNVGWRLDYFILSKALASNISDSLIHSQ------VM 337
Query: 206 GSDHCPVSLELS 217
GSDHCPV L L+
Sbjct: 338 GSDHCPVILLLN 349
>gi|385249934|ref|YP_005778153.1| exodeoxyribonuclease [Helicobacter pylori F57]
gi|420402627|ref|ZP_14901815.1| exodeoxyribonuclease III [Helicobacter pylori CPY6081]
gi|317182729|dbj|BAJ60513.1| exodeoxyribonuclease [Helicobacter pylori F57]
gi|393016094|gb|EJB17254.1| exodeoxyribonuclease III [Helicobacter pylori CPY6081]
Length = 250
Score = 96.7 bits (239), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 62/191 (32%), Positives = 96/191 (50%), Gaps = 26/191 (13%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIW 85
+++ +GRV+ EFE+FYL+N Y PN+ ++ + R W+ ++F+ KP+I
Sbjct: 84 EHDKEGRVVTCEFESFYLVNVYTPNS--QQALSRLSYRMSWEVEFRKFLKALELKKPVIV 141
Query: 86 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 145
CGDLNV+H EID+ +P K + GF+ ER +F +L G ID
Sbjct: 142 CGDLNVAHNEIDLENP---------------KTNRKNAGFSDEERGKFNELLNAG-FIDT 185
Query: 146 YRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 205
+R+ + K+ + WS + + RIDYF+ S LK + + +
Sbjct: 186 FRYFYPNKEKAYTW-WSYMQQARDKNIGWRIDYFLCSNPLKTHL------KDALIYKDIL 238
Query: 206 GSDHCPVSLEL 216
GSDHCPV LEL
Sbjct: 239 GSDHCPVGLEL 249
>gi|312870577|ref|ZP_07730692.1| exodeoxyribonuclease III [Lactobacillus oris PB013-T2-3]
gi|417885012|ref|ZP_12529173.1| exodeoxyribonuclease III [Lactobacillus oris F0423]
gi|311093892|gb|EFQ52221.1| exodeoxyribonuclease III [Lactobacillus oris PB013-T2-3]
gi|341596968|gb|EGS39554.1| exodeoxyribonuclease III [Lactobacillus oris F0423]
Length = 275
Score = 96.7 bits (239), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 65/194 (33%), Positives = 93/194 (47%), Gaps = 35/194 (18%)
Query: 29 EPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQR---RRKWDKRIQEFVLQCS-GKPLI 84
+ +GR+I EF F+L Y PN+G N +R R +WD ++++ Q KP+I
Sbjct: 109 DSEGRIITLEFHDFFLTEVYTPNSG-----NGLKRLADREQWDDCYRDYLHQLDEQKPVI 163
Query: 85 WCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLID 144
GD NV+HEEID++HP + GFT ER FG +L G D
Sbjct: 164 ASGDFNVAHEEIDLAHP---------------ANNHHSAGFTDEERSHFGQLLAAG-FTD 207
Query: 145 AYRFLHKEKDMDCGFSWSGNPI--GKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELE 202
++RFLH E+ +SW + K RIDY++VS L DR+ + M G
Sbjct: 208 SFRFLHPEE--AGAYSWWAQRVLTSKQNNSGWRIDYWLVSNRLADRVSSSSMIDSGER-- 263
Query: 203 GFYGSDHCPVSLEL 216
DH P+ LE+
Sbjct: 264 ----RDHTPIMLEI 273
>gi|386760800|ref|YP_006234017.1| ExoA protein [Bacillus sp. JS]
gi|384934083|gb|AFI30761.1| ExoA [Bacillus sp. JS]
Length = 252
Score = 96.7 bits (239), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 65/190 (34%), Positives = 102/190 (53%), Gaps = 28/190 (14%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIW 85
+++ +GRVI EFE +++ Y PN+ E + R +W++ + ++L+ K P+I
Sbjct: 85 EHDQEGRVITLEFENVFVMTIYTPNSRRGLERIDY--RMQWEEALLSYILELDKKKPVIL 142
Query: 86 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 145
CGDLNV+H+EID+ +P K + GF+ ER F +L+ G +D+
Sbjct: 143 CGDLNVAHQEIDLKNP---------------KANRKNAGFSDQERGAFSRLLEAG-YVDS 186
Query: 146 YRFLHKEKDMDCGFSWSGNPIG-KYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGF 204
+R H D++ +SW G + R RIDYF+VSE LK++I + GI +
Sbjct: 187 FR--HVYPDLEGAYSWWSYRAGARDRNIGWRIDYFVVSESLKEQI-----EDAGIS-KDV 238
Query: 205 YGSDHCPVSL 214
GSDHCPV L
Sbjct: 239 MGSDHCPVEL 248
>gi|381150965|ref|ZP_09862834.1| exodeoxyribonuclease III [Methylomicrobium album BG8]
gi|380882937|gb|EIC28814.1| exodeoxyribonuclease III [Methylomicrobium album BG8]
Length = 254
Score = 96.7 bits (239), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 66/191 (34%), Positives = 93/191 (48%), Gaps = 26/191 (13%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIW 85
+++ +GRVI AEFE F+L+N Y PN+G +E RR WD ++L+ S KP+I
Sbjct: 87 EHDREGRVIAAEFEHFHLVNVYVPNSG--QELVRLDYRRTWDAEFLTYLLKLESRKPVIV 144
Query: 86 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 145
CGD NV+H EID++ P+ A N G+T AE F L G +D
Sbjct: 145 CGDFNVAHREIDIARPK----ANYN----------KSAGYTQAEIDGFSRFLDAG-FVDT 189
Query: 146 YRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 205
+R H + +S+ N G RIDY + S L D++ L
Sbjct: 190 FRHHHPDTVAYSWWSFRANARANNIG--WRIDYALASRALADKV------KQAFILPEVT 241
Query: 206 GSDHCPVSLEL 216
GSDHCPV +E+
Sbjct: 242 GSDHCPVGIEI 252
>gi|332882010|ref|ZP_08449645.1| exodeoxyribonuclease III [Capnocytophaga sp. oral taxon 329 str.
F0087]
gi|357048168|ref|ZP_09109722.1| exodeoxyribonuclease III [Paraprevotella clara YIT 11840]
gi|332679934|gb|EGJ52896.1| exodeoxyribonuclease III [Capnocytophaga sp. oral taxon 329 str.
F0087]
gi|355528751|gb|EHG98229.1| exodeoxyribonuclease III [Paraprevotella clara YIT 11840]
Length = 250
Score = 96.7 bits (239), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 59/191 (30%), Positives = 101/191 (52%), Gaps = 26/191 (13%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIW 85
+++ +GRVI E F+L+ Y PN+ ++ R +W++ + ++LQ + KP+I
Sbjct: 84 EHDKEGRVITLEMPDFFLVTVYTPNS--QDGLKRLDYRMQWEEAFRAYLLQLDTRKPVIV 141
Query: 86 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 145
CGDLNV+H EID+ +P K + GFT ER++FG +L G D
Sbjct: 142 CGDLNVAHREIDLKNP---------------KSNRKNAGFTDEEREKFGILLDSG-FTDT 185
Query: 146 YRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 205
+RF + +++ + WS + + RIDYF+VS+ L+ ++ + + +
Sbjct: 186 FRFFYPDREGIYSW-WSYRFKAREKNAGWRIDYFLVSKRLEAQLKSATIHTE------IF 238
Query: 206 GSDHCPVSLEL 216
GSDHCPV ++L
Sbjct: 239 GSDHCPVEVDL 249
>gi|449096551|ref|YP_007429042.1| apurinic/apyrimidinic endonuclease [Bacillus subtilis XF-1]
gi|449030466|gb|AGE65705.1| apurinic/apyrimidinic endonuclease [Bacillus subtilis XF-1]
Length = 252
Score = 96.7 bits (239), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 63/190 (33%), Positives = 98/190 (51%), Gaps = 28/190 (14%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIW 85
+++ +GRVI EFE +++ Y PN+ E + R +W++ + ++L+ KP+I
Sbjct: 85 EHDQEGRVITLEFENVFVMTVYTPNSRRGLERIDY--RMQWEEALLSYILELDQKKPVIL 142
Query: 86 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 145
CGDLNV+H+EID+ +P K + GF+ ER F L+ G +D+
Sbjct: 143 CGDLNVAHQEIDLKNP---------------KANRNNAGFSDQERGAFTRFLEAG-FVDS 186
Query: 146 YRFLHKEKDMDCGFSWSGNPIG-KYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGF 204
+R H D++ +SW G + R RIDYF+VSE LK++I +
Sbjct: 187 FR--HVYPDLEGAYSWWSYRAGARDRNIGWRIDYFVVSESLKEQIEDASISAD------V 238
Query: 205 YGSDHCPVSL 214
GSDHCPV L
Sbjct: 239 MGSDHCPVEL 248
>gi|418030667|ref|ZP_12669152.1| apurinic/apyrimidinic endonuclease [Bacillus subtilis subsp.
subtilis str. SC-8]
gi|351471726|gb|EHA31839.1| apurinic/apyrimidinic endonuclease [Bacillus subtilis subsp.
subtilis str. SC-8]
Length = 252
Score = 96.7 bits (239), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 63/190 (33%), Positives = 99/190 (52%), Gaps = 28/190 (14%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIW 85
+++ +GRVI EFE +++ Y PN+ E + R +W++ + ++L+ KP+I
Sbjct: 85 EHDQEGRVITLEFENVFVMTVYTPNSRRGLERIDY--RMQWEEALLSYILELDQKKPVIL 142
Query: 86 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 145
CGDLNV+H+EID+ +P K + GF+ ER F L+ G +D+
Sbjct: 143 CGDLNVAHQEIDLKNP---------------KANRNNAGFSDQERGAFTRFLEAG-FVDS 186
Query: 146 YRFLHKEKDMDCGFSWSGNPIG-KYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGF 204
+R H D++ +SW G + R RIDYF+VSE LK++I + +
Sbjct: 187 FR--HVYPDLEGAYSWWSYRAGARDRNIGWRIDYFVVSERLKEQIEDASISADVM----- 239
Query: 205 YGSDHCPVSL 214
GSDHCPV L
Sbjct: 240 -GSDHCPVEL 248
>gi|417838439|ref|ZP_12484677.1| exodeoxyribonuclease III [Lactobacillus johnsonii pf01]
gi|338761982|gb|EGP13251.1| exodeoxyribonuclease III [Lactobacillus johnsonii pf01]
Length = 275
Score = 96.7 bits (239), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 60/190 (31%), Positives = 95/190 (50%), Gaps = 29/190 (15%)
Query: 31 DGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDL 89
+GR++ EF+ +Y+ Y PN+G E + R+ WD++ E++ + GKP+I GD
Sbjct: 111 EGRILTLEFDNYYVTQVYTPNSG--NELKRLEDRQIWDEKYTEYLQKLDKGKPVIASGDY 168
Query: 90 NVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFL 149
NV+H ID+ HPE + GFT ER+ F +LK G D +R +
Sbjct: 169 NVAHTPIDLKHPE---------------NNHHNAGFTDEERQDFDKLLKLG-FTDTFRKV 212
Query: 150 HKEKDMDCGFSWSGNPI--GKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGS 207
H +++ +SW + K RIDY+IVS+ + D++ EM G
Sbjct: 213 H--GNIEGVYSWWAQRVRTSKANNSGWRIDYYIVSDRIADQVTKSEMIDTGER------K 264
Query: 208 DHCPVSLELS 217
DHCP+ LE++
Sbjct: 265 DHCPIMLEIN 274
>gi|406027905|ref|YP_006726737.1| exodeoxyribonuclease III [Lactobacillus buchneri CD034]
gi|405126394|gb|AFS01155.1| exodeoxyribonuclease III [Lactobacillus buchneri CD034]
Length = 256
Score = 96.7 bits (239), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 62/194 (31%), Positives = 98/194 (50%), Gaps = 26/194 (13%)
Query: 23 LSALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK- 81
+++ ++ +GR I E+ FYL+ +Y PN+G + F R W+K +++ + K
Sbjct: 80 INSDEFNHEGRAITLEYPDFYLVTSYVPNSGAGLKRLDF--RMGWNKAFYQYLTELDAKK 137
Query: 82 PLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGR 141
P+I CGDLNV+H+EID+ +P+ + GFT ER+ F +LK G
Sbjct: 138 PVILCGDLNVAHKEIDLKNPQ---------------SNHHNAGFTDEERQDFTNLLKAG- 181
Query: 142 LIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIEL 201
+D +R + ++ D WS + R RIDYF+ S L D I ++ L
Sbjct: 182 FMDTFRHFYPDQ-TDIYSWWSYRFHSRDRNAGWRIDYFVASNRLADEIEDSKI------L 234
Query: 202 EGFYGSDHCPVSLE 215
+GSDHCPV L+
Sbjct: 235 TDVFGSDHCPVELD 248
>gi|313894410|ref|ZP_07827975.1| exodeoxyribonuclease III [Veillonella sp. oral taxon 158 str.
F0412]
gi|313441234|gb|EFR59661.1| exodeoxyribonuclease III [Veillonella sp. oral taxon 158 str.
F0412]
Length = 251
Score = 96.3 bits (238), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 61/191 (31%), Positives = 98/191 (51%), Gaps = 26/191 (13%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIW 85
+++ +GRVI AE++ FYL+ Y PN+ + E + R W+ + ++L+ K P+I
Sbjct: 84 EHDQEGRVITAEYDNFYLVCCYTPNS--QRELARLEYRMAWEDAFRNYLLELDKKKPVIL 141
Query: 86 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 145
CGDLNV+H+EID+ +P K + GF+ ER + +L G D
Sbjct: 142 CGDLNVAHQEIDLKNP---------------KTNRKNAGFSDEERAKMTELLGAG-FTDT 185
Query: 146 YRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 205
+R L+ + + WS + R RIDYFI S+ L D+I ++ + +
Sbjct: 186 FRHLYPDAIEQYSW-WSYMGKARERNTGWRIDYFITSKRLDDKIQEAKIH------QQIF 238
Query: 206 GSDHCPVSLEL 216
GSDHCPV L++
Sbjct: 239 GSDHCPVELDI 249
>gi|404485198|ref|ZP_11020397.1| exodeoxyribonuclease III (xth) [Barnesiella intestinihominis YIT
11860]
gi|404338985|gb|EJZ65428.1| exodeoxyribonuclease III (xth) [Barnesiella intestinihominis YIT
11860]
Length = 252
Score = 96.3 bits (238), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 60/195 (30%), Positives = 97/195 (49%), Gaps = 26/195 (13%)
Query: 23 LSALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGK 81
+ +++ +GR+I E E F+L+N Y PN+ +E + R W+ F+ Q + K
Sbjct: 81 MDRTEHDREGRIITLEMEDFFLVNVYTPNS--QEGLKRLEYRMTWEDDFLHFLKQLKTQK 138
Query: 82 PLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGR 141
P+I CGDLNV+H+EID+ +P K + GFT ER +F +L G
Sbjct: 139 PVIVCGDLNVAHQEIDLKNP---------------KTNRKNAGFTDEERYKFTQLLSAG- 182
Query: 142 LIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIEL 201
D +R+ + + D WS + + RIDYF+ S L +++ + ++
Sbjct: 183 FTDTFRYFYPNQK-DIYSWWSYRFKAREKNAGWRIDYFLASASLNEKLCSAKIHTE---- 237
Query: 202 EGFYGSDHCPVSLEL 216
+GSDHCPV LE+
Sbjct: 238 --IFGSDHCPVELEI 250
>gi|350268379|ref|YP_004879686.1| exodeoxyribonuclease III [Bacillus subtilis subsp. spizizenii
TU-B-10]
gi|349601266|gb|AEP89054.1| exodeoxyribonuclease III [Bacillus subtilis subsp. spizizenii
TU-B-10]
Length = 252
Score = 96.3 bits (238), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 62/193 (32%), Positives = 100/193 (51%), Gaps = 28/193 (14%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIW 85
+++ +GRVI EFE +++ Y PN+ K R +W++ + ++L+ K P+I
Sbjct: 85 EHDQEGRVITLEFENLFVMTVYTPNS--KRGLERIDYRMQWEEALLSYILELDKKKPVIL 142
Query: 86 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 145
CGDLNV+H+EID+ +P K + GF+ ER F L+ G +D+
Sbjct: 143 CGDLNVAHQEIDLKNP---------------KANRNNAGFSEQERGAFTRFLEAG-FVDS 186
Query: 146 YRFLHKEKDMDCGFSWSGNPIG-KYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGF 204
+R H D++ +SW G + R R+DYF+VSE LK++I + +
Sbjct: 187 FR--HVYPDLEGAYSWWSYRAGARDRNIGWRLDYFVVSERLKEQIEDASISADVM----- 239
Query: 205 YGSDHCPVSLELS 217
GSDHCPV L ++
Sbjct: 240 -GSDHCPVELMIN 251
>gi|291519655|emb|CBK74876.1| exodeoxyribonuclease III [Butyrivibrio fibrisolvens 16/4]
Length = 250
Score = 96.3 bits (238), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 61/191 (31%), Positives = 98/191 (51%), Gaps = 26/191 (13%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGKP-LIW 85
+++ +GRVI EFE FY + Y PN+ + E R W+ + ++ + + K +I
Sbjct: 84 EHDHEGRVITLEFEDFYFITCYTPNS--QNELKRLDYRMTWEDDFRAYLQKLNEKKGVIL 141
Query: 86 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 145
CGDLNV+HEEID+ +P K + GFT ER + +L G +D+
Sbjct: 142 CGDLNVAHEEIDIKNP---------------KTNRHNAGFTDEERAKMTELLSAG-FVDS 185
Query: 146 YRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 205
+R+ + ++ D WS + + RIDYFIVSE++KDR+ ++ +
Sbjct: 186 FRYFYPDQ-TDIYSWWSYRFKAREKNAGWRIDYFIVSEDIKDRMKDSKIHTDVM------ 238
Query: 206 GSDHCPVSLEL 216
GSDHCP+ L+
Sbjct: 239 GSDHCPIELDF 249
>gi|327313318|ref|YP_004328755.1| exodeoxyribonuclease III [Prevotella denticola F0289]
gi|326944960|gb|AEA20845.1| exodeoxyribonuclease III [Prevotella denticola F0289]
Length = 249
Score = 96.3 bits (238), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 62/192 (32%), Positives = 99/192 (51%), Gaps = 29/192 (15%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIW 85
+++ +GRVI E + FYL+ Y PN+ ++ R KW+ Q ++ + KP++
Sbjct: 84 EHDHEGRVITLEMDDFYLVTVYTPNS--QDGLRRLDYRMKWEDDFQAYLHKLDEKKPVVV 141
Query: 86 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 145
CGD+NV+H+EID+ +P K + GFT ER++ +L G ID
Sbjct: 142 CGDMNVAHQEIDLKNP---------------KTNRKNAGFTDEEREKMTQLLGNG-FIDT 185
Query: 146 YRFLHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGF 204
+R L+ E+ +S WS + R RIDYF++SE L+DR+ ++
Sbjct: 186 FRTLYPEQ---VTYSWWSYRFRARERNTGWRIDYFLISERLRDRLEDAKIHTE------I 236
Query: 205 YGSDHCPVSLEL 216
GSDHCPV ++L
Sbjct: 237 MGSDHCPVEVDL 248
>gi|212697551|ref|ZP_03305679.1| hypothetical protein ANHYDRO_02124 [Anaerococcus hydrogenalis DSM
7454]
gi|212675454|gb|EEB35061.1| hypothetical protein ANHYDRO_02124 [Anaerococcus hydrogenalis DSM
7454]
Length = 275
Score = 96.3 bits (238), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 61/191 (31%), Positives = 93/191 (48%), Gaps = 29/191 (15%)
Query: 29 EPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWCG 87
+ + R+I EFE FYL Y PN G + R+ WDK+ ++ + KP+I CG
Sbjct: 109 DQEARLITLEFENFYLTQVYTPNAG--SGLSRLDLRQVWDKKYANYLEKLDQNKPVIACG 166
Query: 88 DLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYR 147
D NV+H+EID+ HPE + GFT ER F +L +G +D +R
Sbjct: 167 DFNVAHKEIDLKHPE---------------NNHKSAGFTDEERSGFTNLLNKG-FVDTFR 210
Query: 148 FLHKEKDMDCGFSWSGNPI--GKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 205
+LH D++ ++W + K RIDYFIVS+ +K++I +M G
Sbjct: 211 YLH--GDVEGKYTWWAQRVKTSKINNSGWRIDYFIVSDRIKEKIKESDMIDSGDR----- 263
Query: 206 GSDHCPVSLEL 216
DH P+ + +
Sbjct: 264 -QDHTPIYINM 273
>gi|374583527|ref|ZP_09656621.1| exodeoxyribonuclease III [Desulfosporosinus youngiae DSM 17734]
gi|374419609|gb|EHQ92044.1| exodeoxyribonuclease III [Desulfosporosinus youngiae DSM 17734]
Length = 262
Score = 96.3 bits (238), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 62/191 (32%), Positives = 99/191 (51%), Gaps = 26/191 (13%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIW 85
+++ +GR+I EFE FY++ YAPN+ + R KW+ +++ KP+I
Sbjct: 84 EHDKEGRLITLEFEKFYVVTVYAPNS--QRGLARLDYRMKWEDDFLNYIIGLEKCKPVIV 141
Query: 86 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 145
CGDLNV+H+E+D+ +P NK++ GFT ER +F ++ +G +D
Sbjct: 142 CGDLNVAHKEMDLKNPS------------TNKKN---AGFTPEERSKFDEVINKG-FVDT 185
Query: 146 YRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 205
+RF + +K + WS + RIDYF VS ELK ++ + + +
Sbjct: 186 FRFFYPDKTQAYTW-WSYMFNARANNAGWRIDYFCVSAELKSQL------RNAVIYQDVL 238
Query: 206 GSDHCPVSLEL 216
GSDHCPV LE+
Sbjct: 239 GSDHCPVGLEI 249
>gi|210135690|ref|YP_002302129.1| exodeoxyribonuclease III [Helicobacter pylori P12]
gi|210133658|gb|ACJ08649.1| exodeoxyribonuclease [Helicobacter pylori P12]
Length = 250
Score = 96.3 bits (238), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 63/191 (32%), Positives = 96/191 (50%), Gaps = 26/191 (13%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIW 85
+++ +GRVI EFE+FYL+N Y PN+ ++ + R W+ ++F+ KP+I
Sbjct: 84 EHDKEGRVITCEFESFYLVNVYTPNS--QQALSRLSYRMSWEVEFKKFLKALELKKPVIV 141
Query: 86 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 145
CGDLNV+H EID+ +P K + GF+ ER +F +L G ID
Sbjct: 142 CGDLNVAHNEIDLENP---------------KTNRKNAGFSDEERGKFSELLNAG-FIDT 185
Query: 146 YRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 205
+R+ + K+ + WS + + RIDYF+ S LK + + +
Sbjct: 186 FRYFYPNKEKAYTW-WSYMQQARDKNIGWRIDYFLCSNPLKTCL------KDALIYKDIL 238
Query: 206 GSDHCPVSLEL 216
GSDHCPV LEL
Sbjct: 239 GSDHCPVGLEL 249
>gi|160947302|ref|ZP_02094469.1| hypothetical protein PEPMIC_01235 [Parvimonas micra ATCC 33270]
gi|343520435|ref|ZP_08757404.1| exodeoxyribonuclease III [Parvimonas sp. oral taxon 393 str. F0440]
gi|158446436|gb|EDP23431.1| exodeoxyribonuclease III [Parvimonas micra ATCC 33270]
gi|343397393|gb|EGV09927.1| exodeoxyribonuclease III [Parvimonas sp. oral taxon 393 str. F0440]
Length = 250
Score = 96.3 bits (238), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 58/191 (30%), Positives = 101/191 (52%), Gaps = 26/191 (13%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIW 85
+++ +GR+I E++ F+L+ Y PN+ K+E R W+ + ++L + K +I
Sbjct: 84 EHDNEGRLITLEYDDFFLVTCYTPNS--KQELLRLDYRMVWEDAFRNYLLDLNKTKSVIV 141
Query: 86 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 145
CGDLNV+H+EID+ +P K + GFT ER++ +L G D
Sbjct: 142 CGDLNVAHKEIDLKNP---------------KTNRKNAGFTDEEREKMSILLDSG-FTDT 185
Query: 146 YRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 205
+R+ + +K+ + + WS + R RIDYF+ S+++ DR++ ++ +
Sbjct: 186 FRYFYPDKENEYSW-WSYFGKSRERNTGWRIDYFLTSKDMDDRLVDAQIH------QSIL 238
Query: 206 GSDHCPVSLEL 216
GSDHCPV LE+
Sbjct: 239 GSDHCPVYLEI 249
>gi|420407656|ref|ZP_14906820.1| exodeoxyribonuclease III [Helicobacter pylori CPY6311]
gi|393021114|gb|EJB22248.1| exodeoxyribonuclease III [Helicobacter pylori CPY6311]
Length = 250
Score = 96.3 bits (238), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 62/191 (32%), Positives = 96/191 (50%), Gaps = 26/191 (13%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIW 85
+++ +GRV+ EFE+FYL+N Y PN+ ++ + R W+ ++F+ KP+I
Sbjct: 84 EHDKEGRVVTCEFESFYLVNVYTPNS--QQALSRLSYRMSWEVEFRKFLKALELKKPVIV 141
Query: 86 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 145
CGDLNV+H EID+ +P K + GF+ ER +F +L G ID
Sbjct: 142 CGDLNVAHNEIDLENP---------------KTNRKNAGFSDEERGKFNELLNAG-FIDT 185
Query: 146 YRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 205
+R+ + K+ + WS + + RIDYF+ S LK + + +
Sbjct: 186 FRYFYPNKEKAYTW-WSYMQQARDKNIGWRIDYFLCSNPLK------TLLKDALIYKDIL 238
Query: 206 GSDHCPVSLEL 216
GSDHCPV LEL
Sbjct: 239 GSDHCPVGLEL 249
>gi|225016166|ref|ZP_03705370.1| hypothetical protein CLOSTMETH_00081 [Clostridium methylpentosum
DSM 5476]
gi|224951039|gb|EEG32248.1| hypothetical protein CLOSTMETH_00081 [Clostridium methylpentosum
DSM 5476]
Length = 253
Score = 96.3 bits (238), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 65/193 (33%), Positives = 96/193 (49%), Gaps = 26/193 (13%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIW 85
+++ +GRVI EFE F L+N Y PN F R +W+ + ++L+ KP++
Sbjct: 84 EFDTEGRVITVEFEKFTLINVYTPNAQRGLTRIDF--RMQWEDAFRVYLLRLQESKPVVV 141
Query: 86 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 145
CGDLNV+H EID+ + K + G GF+ ER + +L+ G L D+
Sbjct: 142 CGDLNVAHNEIDLKN---------------YKTNRGNAGFSDEERGKMTELLQSG-LTDS 185
Query: 146 YRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 205
+R+L+ EK C WS + RIDYF+ S+ LKD+I +
Sbjct: 186 FRYLYPEK-TGCYTWWSYMFNARANNAGWRIDYFLTSDVLKDQI------EDSVIYSEVL 238
Query: 206 GSDHCPVSLELSE 218
GSDHCP+ L L E
Sbjct: 239 GSDHCPIGLFLRE 251
>gi|310831095|ref|YP_003969738.1| putative apurinic-apyrimidinic endonuclease 1 [Cafeteria
roenbergensis virus BV-PW1]
gi|309386279|gb|ADO67139.1| putative apurinic-apyrimidinic endonuclease 1 [Cafeteria
roenbergensis virus BV-PW1]
Length = 262
Score = 96.3 bits (238), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 64/188 (34%), Positives = 99/188 (52%), Gaps = 25/188 (13%)
Query: 31 DGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGDL 89
+GR+I EF+ +YL++ Y PN+G + R +WDK +++ KP+I CGDL
Sbjct: 99 EGRMITLEFKEYYLIHVYTPNSGQGLVRLQY-RTEEWDKNFRKYCANLQKIKPIIICGDL 157
Query: 90 NVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFL 149
NV++E ID+++P ++ K N GFT ERK F L + LID +R+L
Sbjct: 158 NVANENIDLANP---SSNKKNA------------GFTDVERKSFKLTLTKLNLIDTFRYL 202
Query: 150 HKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDH 209
+ D+ F W+ + + RIDYF+VSE+L ++ + H GSDH
Sbjct: 203 Y-PTDIKYSF-WTYYHNARPKNIGWRIDYFLVSEKLLPKVKDSNILTH------IMGSDH 254
Query: 210 CPVSLELS 217
PV L+L+
Sbjct: 255 APVILKLT 262
>gi|330996654|ref|ZP_08320532.1| exodeoxyribonuclease III [Paraprevotella xylaniphila YIT 11841]
gi|329572726|gb|EGG54359.1| exodeoxyribonuclease III [Paraprevotella xylaniphila YIT 11841]
Length = 250
Score = 96.3 bits (238), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 62/191 (32%), Positives = 102/191 (53%), Gaps = 26/191 (13%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIW 85
+++ +GRVI E F+L+ Y PN+ ++ R +W++ + ++LQ + KP+I
Sbjct: 84 EHDREGRVITLEMPDFFLVTVYTPNS--QDGLKRLDYRMQWEEAFRAYLLQLDTRKPVIV 141
Query: 86 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 145
CGDLNV+H EID+ +P K + GFT ER++FG +L G D
Sbjct: 142 CGDLNVAHREIDLKNP---------------KSNRKNAGFTDEEREKFGILLDSG-FTDT 185
Query: 146 YRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 205
+RF + +++ + WS + + RIDYF+VS+ L+ +++ I E F
Sbjct: 186 FRFFYPDREGIYSW-WSYRFKAREKNAGWRIDYFLVSKRLE-----AQLKSATIHTEIF- 238
Query: 206 GSDHCPVSLEL 216
GSDHCPV ++L
Sbjct: 239 GSDHCPVEVDL 249
>gi|239792809|dbj|BAH72703.1| ACYPI007473 [Acyrthosiphon pisum]
Length = 175
Score = 96.3 bits (238), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 59/183 (32%), Positives = 97/183 (53%), Gaps = 26/183 (14%)
Query: 31 DGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWCGDL 89
+GRVI AE+E F+L++TY PN G + + +R KWD+ ++++ + + KP++ GDL
Sbjct: 12 EGRVIEAEYEQFFLVSTYIPNAGAGLK--TLPKRMKWDEAFRKYLKELDTKKPVVLTGDL 69
Query: 90 NVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFL 149
NV+HEEID+++P K + GFT ER +L++G +D +R L
Sbjct: 70 NVAHEEIDIANP---------------KTNTKSAGFTKEERDNMSLLLEQG-FVDTFRTL 113
Query: 150 HKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDH 209
+ EK F W+ + + R+DYFI S+ D + ++ + GSDH
Sbjct: 114 NPEKTGAYTF-WTYFHNSRAKNVGWRLDYFITSKRFMDNVCDSTIRNEVL------GSDH 166
Query: 210 CPV 212
CP+
Sbjct: 167 CPI 169
>gi|251794788|ref|YP_003009519.1| exodeoxyribonuclease III Xth [Paenibacillus sp. JDR-2]
gi|247542414|gb|ACS99432.1| exodeoxyribonuclease III Xth [Paenibacillus sp. JDR-2]
Length = 258
Score = 96.3 bits (238), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 66/198 (33%), Positives = 102/198 (51%), Gaps = 31/198 (15%)
Query: 29 EPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCG 87
+ +GRVI E+E FYL+ Y PN + + + R W++ + ++++ KP+I CG
Sbjct: 87 DTEGRVITLEYENFYLVTVYTPNA--RRDLSRLDFRLAWEEMFRGYLIKLDEHKPVIVCG 144
Query: 88 DLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYR 147
DLNV+H++ID+ + K + G GFT ER++ +L G ID++R
Sbjct: 145 DLNVAHQDIDLKNA---------------KSNRGNSGFTDEEREKMTRLLDAG-FIDSFR 188
Query: 148 FLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGS 207
+L+ ++ D WS P + R RIDYF+ S L I+ GI+ + GS
Sbjct: 189 YLYPDR-TDAYTWWSFMPKIRERNVGWRIDYFLASARLAPAIVEA-----GIDSQ-ILGS 241
Query: 208 DHCPVSLELSEASSDSEK 225
DHCPV L L D+EK
Sbjct: 242 DHCPVVLTL-----DTEK 254
>gi|386747928|ref|YP_006221136.1| exodeoxyribonuclease III [Helicobacter cetorum MIT 99-5656]
gi|384554170|gb|AFI05926.1| exodeoxyribonuclease III [Helicobacter cetorum MIT 99-5656]
Length = 250
Score = 96.3 bits (238), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 62/192 (32%), Positives = 97/192 (50%), Gaps = 26/192 (13%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIW 85
+++ +GRV+ EF+ FYL+N Y PN+ + + R W+ ++F+ KP+I
Sbjct: 84 EHDTEGRVVTCEFDKFYLVNVYTPNS--QRALARLEYRMSWEVEFRKFLKNLELQKPVIV 141
Query: 86 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 145
CGDLNV+H EID+ +P K + GF+ ER++F +L G ID
Sbjct: 142 CGDLNVAHNEIDLENP---------------KANRKNAGFSDEEREKFSELLNAG-FIDT 185
Query: 146 YRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 205
+R + K+ + WS + + RIDYF+ S+ LK + ++ E
Sbjct: 186 FRHFYPTKEKAYTW-WSYMQQARDKNIGWRIDYFLCSKSLKTELKDAKI------YENIL 238
Query: 206 GSDHCPVSLELS 217
GSDHCPV LEL+
Sbjct: 239 GSDHCPVGLELA 250
>gi|290986733|ref|XP_002676078.1| predicted protein [Naegleria gruberi]
gi|284089678|gb|EFC43334.1| predicted protein [Naegleria gruberi]
Length = 340
Score = 96.3 bits (238), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 60/190 (31%), Positives = 99/190 (52%), Gaps = 26/190 (13%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIW 85
K++ +GR I E+E FYL+NTY PN+G + + R ++WD + ++ + KP+IW
Sbjct: 170 KHDLEGRTITVEYEDFYLVNTYCPNSGQNLDRLEY-RTKEWDVDLLKYFEKLEKKKPIIW 228
Query: 86 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEG-RLID 144
GDLNV+ E+D+ P + + PGFT+ ER+ + K ID
Sbjct: 229 GGDLNVAISEMDIHDPLTLSKS---------------PGFTLEERQSSPLVTKASPPFID 273
Query: 145 AYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGF 204
++R+ + K + + + + + K RIDYF+ S LKD+I+ + LE +
Sbjct: 274 SFRYKNPYKKQYTYYGYIND--MRLQKKGWRIDYFVCSNSLKDKIVNSYI------LEEY 325
Query: 205 YGSDHCPVSL 214
+GSDH P+ L
Sbjct: 326 FGSDHLPIGL 335
>gi|160945969|ref|ZP_02093195.1| hypothetical protein FAEPRAM212_03502 [Faecalibacterium prausnitzii
M21/2]
gi|158443700|gb|EDP20705.1| exodeoxyribonuclease III [Faecalibacterium prausnitzii M21/2]
gi|295103228|emb|CBL00772.1| exodeoxyribonuclease III [Faecalibacterium prausnitzii SL3/3]
Length = 250
Score = 96.3 bits (238), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 63/192 (32%), Positives = 98/192 (51%), Gaps = 29/192 (15%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIW 85
+++ +GRV+ E+ FYL+N Y PN+ ++ R +W+ + ++L K P+I
Sbjct: 84 QHDHEGRVLTLEYPGFYLVNCYTPNS--QDGLKRLDYRMEWEDAFRAYLLALDAKKPVIL 141
Query: 86 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 145
CGDLNV+H E+D+ + AK N GFT ER + +L G D+
Sbjct: 142 CGDLNVAHTEMDIKN------AKTNRM---------SAGFTDQERAKMTELLAAG-FADS 185
Query: 146 YRFLHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGF 204
+R +H + + +S WS + + RIDYFIVS + DRI A E+
Sbjct: 186 FRVVHPD---EVKYSWWSYRFHAREKNAGWRIDYFIVSRRIADRIRAAEIHNE------I 236
Query: 205 YGSDHCPVSLEL 216
+GSDHCPV L++
Sbjct: 237 FGSDHCPVELQI 248
>gi|159906029|ref|YP_001549691.1| exodeoxyribonuclease III Xth [Methanococcus maripaludis C6]
gi|159887522|gb|ABX02459.1| exodeoxyribonuclease III Xth [Methanococcus maripaludis C6]
Length = 249
Score = 96.3 bits (238), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 66/193 (34%), Positives = 98/193 (50%), Gaps = 35/193 (18%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIW 85
+++ +GRVI +F+ +YL+N Y PN+ + + R+KWD+ +V K P+I+
Sbjct: 84 EHDGEGRVITLKFDEYYLVNVYTPNS--QRGLTRLEYRQKWDQDFLNYVKTLENKKPVIF 141
Query: 86 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 145
CGDLNV+H+E+D+ +P K + GFT ERK F I+ G +D
Sbjct: 142 CGDLNVAHKEVDLKNP---------------KTNVKNAGFTPEERKGFDNIVNSG-FLDT 185
Query: 146 YRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSE----ELKDRIIACEMQGHGIEL 201
+R +KE D +S+ N + R RIDYF +SE LKD I E+
Sbjct: 186 FREFNKEPDNYSWWSYRFN--ARARNIGWRIDYFCISESLRGNLKDAFIMPEIM------ 237
Query: 202 EGFYGSDHCPVSL 214
GSDHCPV +
Sbjct: 238 ----GSDHCPVGI 246
>gi|386746941|ref|YP_006220158.1| exodeoxyribonuclease III [Helicobacter pylori HUP-B14]
gi|384553190|gb|AFI08138.1| exodeoxyribonuclease III [Helicobacter pylori HUP-B14]
Length = 250
Score = 96.3 bits (238), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 62/191 (32%), Positives = 97/191 (50%), Gaps = 26/191 (13%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIW 85
+++ +GRV+ EFE+FYL+N Y PN+ ++ + R W+ ++F+ KP+I
Sbjct: 84 EHDKEGRVVTCEFESFYLVNVYTPNS--QQALSRLNYRMSWEVEFKKFLKALELKKPVIV 141
Query: 86 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 145
CGDLNV+H EID+ +P K + GF+ ER++F +L G ID
Sbjct: 142 CGDLNVAHNEIDLENP---------------KTNRKNAGFSDEEREKFNELLNAG-FIDT 185
Query: 146 YRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 205
+R+ + K+ + WS + + RIDYF+ S LK + + +
Sbjct: 186 FRYFYPNKEKAYTW-WSYMQQARDKDIGWRIDYFLCSNPLKTCL------KDALIYKDIL 238
Query: 206 GSDHCPVSLEL 216
GSDHCPV LEL
Sbjct: 239 GSDHCPVGLEL 249
>gi|402846244|ref|ZP_10894559.1| exodeoxyribonuclease III [Porphyromonas sp. oral taxon 279 str.
F0450]
gi|402268322|gb|EJU17703.1| exodeoxyribonuclease III [Porphyromonas sp. oral taxon 279 str.
F0450]
Length = 250
Score = 95.9 bits (237), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 64/191 (33%), Positives = 95/191 (49%), Gaps = 26/191 (13%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIW 85
+++ +GRVI E+ F+L+ Y PN+ +++ R W+ + ++ K P+I
Sbjct: 84 EHDQEGRVITLEYPEFFLVTVYTPNS--QDDLRRLDYRMTWEDAFRSYLKGLDAKKPVII 141
Query: 86 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 145
CGDLNV+H+EID+ +P K + GFT ER + +L G ID
Sbjct: 142 CGDLNVAHKEIDLKNP---------------KSNRRNAGFTDEERGKLQELLDAG-FIDT 185
Query: 146 YRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 205
+R+ + ++ D WS + R RIDYF+ SE L R +QG I E Y
Sbjct: 186 FRYFYPDQ-ADIYSWWSYRFKARERNSGWRIDYFVASERLAPR-----LQGAAIHTE-IY 238
Query: 206 GSDHCPVSLEL 216
GSDHCPV L L
Sbjct: 239 GSDHCPVELIL 249
>gi|331702430|ref|YP_004399389.1| exodeoxyribonuclease III Xth [Lactobacillus buchneri NRRL B-30929]
gi|329129773|gb|AEB74326.1| exodeoxyribonuclease III Xth [Lactobacillus buchneri NRRL B-30929]
Length = 256
Score = 95.9 bits (237), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 61/194 (31%), Positives = 100/194 (51%), Gaps = 26/194 (13%)
Query: 23 LSALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK- 81
+++ +++ +GR I E+ FYL+ +Y PN+G + F R W+K +++ + K
Sbjct: 80 INSDEFDHEGRAITLEYPDFYLVTSYVPNSGAGLKRLDF--RMGWNKAFYQYLTELDAKK 137
Query: 82 PLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGR 141
P+I CGDLNV+H+EI++ +P+ + GFT ER+ F +LK G
Sbjct: 138 PVILCGDLNVAHKEIELKNPQ---------------SNHHNAGFTDEERQDFTKLLKAG- 181
Query: 142 LIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIEL 201
+D +R + ++ D WS + R RIDYF+ S L D+I ++ L
Sbjct: 182 FMDTFRHFYPDQ-TDIYSWWSYRFHSRDRNAGWRIDYFVASNRLADQIEDSKI------L 234
Query: 202 EGFYGSDHCPVSLE 215
+GSDHCPV L+
Sbjct: 235 TDVFGSDHCPVELD 248
>gi|288803025|ref|ZP_06408461.1| exodeoxyribonuclease III [Prevotella melaninogenica D18]
gi|288334542|gb|EFC72981.1| exodeoxyribonuclease III [Prevotella melaninogenica D18]
Length = 249
Score = 95.9 bits (237), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 63/192 (32%), Positives = 98/192 (51%), Gaps = 29/192 (15%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIW 85
+++ +GRVI E + FYL+ Y PN+ ++ R KW+ Q ++ + KP+I
Sbjct: 84 EHDHEGRVITLEMDDFYLVTVYTPNS--QDGLRRLDYRMKWEDDFQAYLHKLDEKKPVIV 141
Query: 86 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 145
CGD+NV+H+EID+ +P K + GFT ER++ +L G ID
Sbjct: 142 CGDMNVAHQEIDLKNP---------------KTNRKNAGFTDEEREKMTQLLSNG-FIDT 185
Query: 146 YRFLHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGF 204
+R L+ E+ +S WS + + RIDYF++SE LKDR+ ++
Sbjct: 186 FRTLYPEQ---VTYSWWSYRFRAREKNTGWRIDYFLISERLKDRLEDAKIHTE------I 236
Query: 205 YGSDHCPVSLEL 216
GSDHCPV + L
Sbjct: 237 MGSDHCPVEIIL 248
>gi|266623165|ref|ZP_06116100.1| exodeoxyribonuclease III [Clostridium hathewayi DSM 13479]
gi|288865076|gb|EFC97374.1| exodeoxyribonuclease III [Clostridium hathewayi DSM 13479]
Length = 251
Score = 95.9 bits (237), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 62/189 (32%), Positives = 98/189 (51%), Gaps = 26/189 (13%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIW 85
+++ +GRVI AEF +Y++ Y PN+ K+ R W+ ++ KP+I+
Sbjct: 85 EHDHEGRVITAEFSDYYVVTCYTPNS--KDGLARLPYRMVWEDAFLRYLKGLEEKKPVIF 142
Query: 86 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 145
CGDLNV+H+EID+ +P K + GFT ER +F +L G ID
Sbjct: 143 CGDLNVAHKEIDLKNP---------------KTNRKNAGFTDEERGKFTDLLDAG-FIDT 186
Query: 146 YRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 205
+R+ + +++ + WS + + RIDYF VSE LKDR+++ ++ +
Sbjct: 187 FRWFYPDREEIYSW-WSYRFSARSKNAGWRIDYFCVSEALKDRLVSADIHTEVL------ 239
Query: 206 GSDHCPVSL 214
GSDHCPV L
Sbjct: 240 GSDHCPVEL 248
>gi|296330017|ref|ZP_06872501.1| apurinic/apyrimidinic endonuclease [Bacillus subtilis subsp.
spizizenii ATCC 6633]
gi|305676741|ref|YP_003868413.1| apurinic/apyrimidinic endonuclease [Bacillus subtilis subsp.
spizizenii str. W23]
gi|296153056|gb|EFG93921.1| apurinic/apyrimidinic endonuclease [Bacillus subtilis subsp.
spizizenii ATCC 6633]
gi|305414985|gb|ADM40104.1| apurinic/apyrimidinic endonuclease [Bacillus subtilis subsp.
spizizenii str. W23]
Length = 252
Score = 95.9 bits (237), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 61/193 (31%), Positives = 100/193 (51%), Gaps = 28/193 (14%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIW 85
+++ +GRVI EFE +++ Y PN+ K R +W++ + ++L+ K P+I
Sbjct: 85 EHDQEGRVITLEFENLFVMTVYTPNS--KRGLERIDYRMQWEEALLSYILELDKKKPVIL 142
Query: 86 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 145
CGDLNV+H+EID+ +P K + GF+ ER F +L+ G +D+
Sbjct: 143 CGDLNVAHQEIDLKNP---------------KANRNNAGFSDQERGAFTRLLEAG-FVDS 186
Query: 146 YRFLHKEKDMDCGFSWSGNPIG-KYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGF 204
+R H D++ +SW G + R R+DYF+VSE L+++I +
Sbjct: 187 FR--HVYPDLEGAYSWWSYRAGARDRNIGWRLDYFVVSERLEEQIEDASISAD------V 238
Query: 205 YGSDHCPVSLELS 217
GSDHCPV L ++
Sbjct: 239 MGSDHCPVELMIN 251
>gi|365904744|ref|ZP_09442503.1| Exodeoxyribonuclease III [Lactobacillus versmoldensis KCTC 3814]
Length = 253
Score = 95.9 bits (237), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 63/192 (32%), Positives = 94/192 (48%), Gaps = 27/192 (14%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGKPLIWC 86
++ +GR I E+ FYL+N+Y PN+ K + F R D + KP+I C
Sbjct: 84 EFNHEGRTITLEYPDFYLINSYTPNSQPKLKRLDF-RMGYNDAMWKHMQTLSKKKPVILC 142
Query: 87 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 146
GDLNV+H EID+ + +K + PGF+ ER +F +L G D +
Sbjct: 143 GDLNVAHNEIDIKN---------------DKTNHKNPGFSDEERNKFSELLDSG-FTDTF 186
Query: 147 RFLHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 205
R+LH E + +S WS + RIDYF++S +D I ++ L Y
Sbjct: 187 RYLHPE---EVKYSWWSYRFNARKNNAGWRIDYFVISNNGQDLIQNADI------LNDVY 237
Query: 206 GSDHCPVSLELS 217
GSDHCP+ L+L+
Sbjct: 238 GSDHCPIQLDLN 249
>gi|383754456|ref|YP_005433359.1| putative exodeoxyribonuclease III [Selenomonas ruminantium subsp.
lactilytica TAM6421]
gi|381366508|dbj|BAL83336.1| putative exodeoxyribonuclease III [Selenomonas ruminantium subsp.
lactilytica TAM6421]
Length = 250
Score = 95.9 bits (237), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 63/195 (32%), Positives = 98/195 (50%), Gaps = 26/195 (13%)
Query: 23 LSALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GK 81
L +++ +GRVI EF +L+ Y PN+ K E R +W+ + ++++ K
Sbjct: 80 LGIEEHDHEGRVITLEFPEMFLVTVYTPNS--KRELERLAYRMEWEDAFRAYLMKLDEQK 137
Query: 82 PLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGR 141
P+I CGDLNV+H+EID+ +P K + GFT ER +FG +L G
Sbjct: 138 PVIVCGDLNVAHQEIDLKNP---------------KTNHHNAGFTDEERGKFGELLDAG- 181
Query: 142 LIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIEL 201
ID +R L+ ++ + WS + RIDYF+ S+ L+++I +
Sbjct: 182 FIDTFRTLYPDRTGIYTW-WSYLRKARDNNAGWRIDYFVASKRLQEKIQDATIHNE---- 236
Query: 202 EGFYGSDHCPVSLEL 216
+GSDHCPV LEL
Sbjct: 237 --IFGSDHCPVGLEL 249
>gi|167771017|ref|ZP_02443070.1| hypothetical protein ANACOL_02371 [Anaerotruncus colihominis DSM
17241]
gi|167666687|gb|EDS10817.1| exodeoxyribonuclease III [Anaerotruncus colihominis DSM 17241]
Length = 250
Score = 95.9 bits (237), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 62/192 (32%), Positives = 98/192 (51%), Gaps = 28/192 (14%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIW 85
+++ +GRVI E+E FYL+N Y PN + E + R KW+ + +++ K P++
Sbjct: 84 EHDSEGRVITVEYEPFYLVNCYTPNA--QRELARLEYRMKWEDDFRAYLMSLDAKKPVVL 141
Query: 86 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 145
CGDLNV+H+EID+ +P K + GF+ ER + +L G +D
Sbjct: 142 CGDLNVAHQEIDLKNP---------------KTNRRNAGFSDEERAKMTELLAGG-FVDT 185
Query: 146 YRFLHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGF 204
+R L+ D+ ++ WS + RIDYFIVSE L+ + ++ +
Sbjct: 186 FRALY--PDVTGAYTWWSYLRRARDTNAGWRIDYFIVSERLRGAVHDSRIRADVM----- 238
Query: 205 YGSDHCPVSLEL 216
GSDHCPV L+L
Sbjct: 239 -GSDHCPVELDL 249
>gi|328702292|ref|XP_001952290.2| PREDICTED: recombination repair protein 1-like [Acyrthosiphon
pisum]
Length = 317
Score = 95.9 bits (237), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 59/183 (32%), Positives = 96/183 (52%), Gaps = 26/183 (14%)
Query: 31 DGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWCGDL 89
+GRVI AE+E F+L++TY PN G + +R KWD+ ++++ + + KP++ GDL
Sbjct: 154 EGRVIEAEYEQFFLVSTYIPNAG--AGLKTLPKRMKWDEAFRKYLKELDTKKPVVLTGDL 211
Query: 90 NVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFL 149
NV+HEEID+++P K + GFT ER +L++G +D +R L
Sbjct: 212 NVAHEEIDIANP---------------KTNTKSAGFTKEERDNMSLLLEQG-FVDTFRTL 255
Query: 150 HKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDH 209
+ EK F W+ + + R+DYFI S+ D + ++ + GSDH
Sbjct: 256 NPEKTGAYTF-WTYFHNSRAKNVGWRLDYFITSKRFMDNVCDSTIRNEVL------GSDH 308
Query: 210 CPV 212
CP+
Sbjct: 309 CPI 311
>gi|406931444|gb|EKD66730.1| hypothetical protein ACD_49C00017G0002 [uncultured bacterium (gcode
4)]
Length = 255
Score = 95.9 bits (237), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 63/201 (31%), Positives = 103/201 (51%), Gaps = 27/201 (13%)
Query: 17 SVFHFLLSALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVL 76
SV ++L A +++ + R+I EFE FY +N Y PN K E R+ WD +++
Sbjct: 79 SVSYWLWLA-EHDEEWRIITLEFENFYFVNVYTPNA--KRELERLDYRQLWDSLFLDYLK 135
Query: 77 QC-SGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGA 135
+ KP+I C D NV+H+EID+++P+ K N GFT ER+ F
Sbjct: 136 RLEQNKPVITCWDFNVAHQEIDLTNPK---TNKWNA------------GFTPEEREWFSK 180
Query: 136 ILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQ 195
+ G ID +R+ + +K + + WS + R RIDYF++S LK+++ + ++
Sbjct: 181 FISSG-FIDTFRYFYPDKTWEYSW-WSNFANSRARNIGWRIDYFLISNTLKNKLKSAFIK 238
Query: 196 GHGIELEGFYGSDHCPVSLEL 216
+ SDHCPV +E+
Sbjct: 239 ------QEVRWSDHCPVGIEI 253
>gi|421185556|ref|ZP_15642955.1| exonuclease III [Oenococcus oeni AWRIB418]
gi|399968819|gb|EJO03250.1| exonuclease III [Oenococcus oeni AWRIB418]
Length = 273
Score = 95.9 bits (237), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 61/189 (32%), Positives = 93/189 (49%), Gaps = 30/189 (15%)
Query: 31 DGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDL 89
+GR++ E+ FYLLN Y PN+G + R KWD + + ++ S K +I+ GDL
Sbjct: 110 EGRIVTLEYPDFYLLNVYTPNSG--DGLRRLPERGKWDDQFRHYISDLSERKIVIFSGDL 167
Query: 90 NVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFL 149
NV+HEEID+ + + + GFT ER++F +L G ID +R
Sbjct: 168 NVAHEEIDLKN---------------SSSNHNSAGFTDQEREKFSRLLSAG-FIDTWRLQ 211
Query: 150 HKEKDMDCGFSW--SGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGS 207
H + + +SW N + K RIDY+IVS KD+I+ M G +
Sbjct: 212 HPK---EIAYSWWSQRNRLAKTNNAGWRIDYYIVSNSAKDKIVKTGMIDTGTR------A 262
Query: 208 DHCPVSLEL 216
DH P+ L++
Sbjct: 263 DHAPIYLQM 271
>gi|325846697|ref|ZP_08169612.1| exodeoxyribonuclease III [Anaerococcus hydrogenalis ACS-025-V-Sch4]
gi|325481455|gb|EGC84496.1| exodeoxyribonuclease III [Anaerococcus hydrogenalis ACS-025-V-Sch4]
Length = 275
Score = 95.9 bits (237), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 60/191 (31%), Positives = 93/191 (48%), Gaps = 29/191 (15%)
Query: 29 EPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWCG 87
+ + R+I EF+ FYL Y PN G + R+ WDK+ ++ + KP+I CG
Sbjct: 109 DQEARIITLEFDNFYLTQVYTPNAG--SGLSRLDLRQVWDKKYANYLEKLDQNKPVIACG 166
Query: 88 DLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYR 147
D NV+H+EID+ HPE + GFT ER F +L +G +D +R
Sbjct: 167 DFNVAHKEIDLKHPE---------------NNHKSAGFTDEERSGFTNLLNKG-FVDTFR 210
Query: 148 FLHKEKDMDCGFSWSGNPI--GKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 205
+LH D++ ++W + K RIDYFIVS+ +K++I +M G
Sbjct: 211 YLH--GDVEGKYTWWAQRVKTSKINNSGWRIDYFIVSDRIKEKIKESDMIDSGDR----- 263
Query: 206 GSDHCPVSLEL 216
DH P+ + +
Sbjct: 264 -QDHTPIYINI 273
>gi|16082631|ref|NP_394956.1| exonuclease III [Thermoplasma acidophilum DSM 1728]
Length = 250
Score = 95.9 bits (237), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 64/187 (34%), Positives = 93/187 (49%), Gaps = 27/187 (14%)
Query: 31 DGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWCGDL 89
+GR++ EF+ FY +N Y PN + + +D++ E+ + KPLI CGD
Sbjct: 88 EGRILNLEFDKFYFINVYFPNA--QHGLTRLDMKLDFDEKFLEYSNELRKKKPLIICGDF 145
Query: 90 NVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFL 149
NV+HEEID++ P K++ GFT ER L G +D YR
Sbjct: 146 NVAHEEIDIARP---------------KDNENNAGFTKQERDWMTKFLDSG-YVDTYRIF 189
Query: 150 HKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDH 209
KE +S+ N K G RIDYF+VS++++DR+ E+ LE GSDH
Sbjct: 190 MKEGGHYSWWSYRFNARAKNIG--WRIDYFVVSDDIRDRVKKAEI------LETVTGSDH 241
Query: 210 CPVSLEL 216
PV+LE+
Sbjct: 242 APVTLEV 248
>gi|345881123|ref|ZP_08832651.1| exodeoxyribonuclease [Prevotella oulorum F0390]
gi|343920840|gb|EGV31568.1| exodeoxyribonuclease [Prevotella oulorum F0390]
Length = 250
Score = 95.9 bits (237), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 61/191 (31%), Positives = 99/191 (51%), Gaps = 27/191 (14%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIW 85
+++ +GRVI E+E+F+L+ Y PN+ ++E R +W+ Q ++ + KP+I
Sbjct: 84 EHDHEGRVITLEYESFFLVTVYTPNS--QDELRRLDYRMQWEDDFQAYLHRLDEQKPVIV 141
Query: 86 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 145
CGD+NV+HEEID+ +P K + GFT ER + +L G ID
Sbjct: 142 CGDMNVAHEEIDLKNP---------------KTNRRNAGFTDEERAKMTQLLGHG-FIDT 185
Query: 146 YRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 205
+R L+ E+ +S+ K G RIDYF++SE L+ ++ ++
Sbjct: 186 FRTLYPEQQTYSWWSYRFRAREKNTG--WRIDYFLISERLRPQLTDAKIH------TDIM 237
Query: 206 GSDHCPVSLEL 216
GSDHCPV ++L
Sbjct: 238 GSDHCPVEVDL 248
>gi|10640846|emb|CAC12624.1| probable apurinic/apyrimidinic endonuclease [Thermoplasma
acidophilum]
Length = 241
Score = 95.9 bits (237), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 64/187 (34%), Positives = 93/187 (49%), Gaps = 27/187 (14%)
Query: 31 DGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWCGDL 89
+GR++ EF+ FY +N Y PN + + +D++ E+ + KPLI CGD
Sbjct: 79 EGRILNLEFDKFYFINVYFPNA--QHGLTRLDMKLDFDEKFLEYSNELRKKKPLIICGDF 136
Query: 90 NVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFL 149
NV+HEEID++ P K++ GFT ER L G +D YR
Sbjct: 137 NVAHEEIDIARP---------------KDNENNAGFTKQERDWMTKFLDSG-YVDTYRIF 180
Query: 150 HKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDH 209
KE +S+ N K G RIDYF+VS++++DR+ E+ LE GSDH
Sbjct: 181 MKEGGHYSWWSYRFNARAKNIG--WRIDYFVVSDDIRDRVKKAEI------LETVTGSDH 232
Query: 210 CPVSLEL 216
PV+LE+
Sbjct: 233 APVTLEV 239
>gi|336429860|ref|ZP_08609818.1| exodeoxyribonuclease [Lachnospiraceae bacterium 3_1_57FAA_CT1]
gi|336001765|gb|EGN31900.1| exodeoxyribonuclease [Lachnospiraceae bacterium 3_1_57FAA_CT1]
Length = 252
Score = 95.5 bits (236), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 64/195 (32%), Positives = 105/195 (53%), Gaps = 28/195 (14%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIW 85
+++ +GRVI EF FY++ Y PN+ ++ R W++ +++ + K P+I+
Sbjct: 84 EHDQEGRVITLEFPDFYMVTVYTPNS--QDGLARLDYRMTWEEEFLKYLKKLEEKKPVIF 141
Query: 86 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 145
CGDLNV+H+EID+ +P K + GFT ER++F +L+ G ID
Sbjct: 142 CGDLNVAHKEIDLKNP---------------KTNRKNAGFTDEEREKFSVLLENG-FIDT 185
Query: 146 YRFLHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGF 204
+R+ + D+ +S WS + + RIDYF+VS +LK+R+ + +
Sbjct: 186 FRYFY--PDLKDAYSWWSYRFHAREKNAGWRIDYFLVSPQLKERL------EDAVIYKDV 237
Query: 205 YGSDHCPVSLELSEA 219
+GSDHCPV+L L EA
Sbjct: 238 FGSDHCPVALILKEA 252
>gi|261366200|ref|ZP_05979083.1| exodeoxyribonuclease III [Subdoligranulum variabile DSM 15176]
gi|282572018|gb|EFB77553.1| exodeoxyribonuclease III [Subdoligranulum variabile DSM 15176]
Length = 251
Score = 95.5 bits (236), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 64/187 (34%), Positives = 92/187 (49%), Gaps = 26/187 (13%)
Query: 31 DGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGDL 89
+GR I E+ FYL+N Y PN+ + E R +W+ ++ ++ KP+I CGDL
Sbjct: 88 EGRAITLEYPDFYLVNLYVPNS--QNELARIDYRMQWEDDLRRYLQALDAQKPVILCGDL 145
Query: 90 NVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFL 149
NV+H EID+ +P PN+ G GF+ ER + +L G D +R L
Sbjct: 146 NVAHTEIDLKNPG------------PNR---GAAGFSDQERGKLDELLAAG-FTDTFRHL 189
Query: 150 HKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDH 209
H + + WS + R RIDYF+VS L +I ++ L GSDH
Sbjct: 190 HPDATGIYSW-WSMRFRARERNAGWRIDYFLVSNRLAPQIRKADI------LMDILGSDH 242
Query: 210 CPVSLEL 216
CPV+LEL
Sbjct: 243 CPVTLEL 249
>gi|340349685|ref|ZP_08672691.1| exodeoxyribonuclease III [Prevotella nigrescens ATCC 33563]
gi|387133768|ref|YP_006299740.1| exodeoxyribonuclease III [Prevotella intermedia 17]
gi|445112647|ref|ZP_21377202.1| exodeoxyribonuclease III (xth) [Prevotella nigrescens F0103]
gi|339610439|gb|EGQ15291.1| exodeoxyribonuclease III [Prevotella nigrescens ATCC 33563]
gi|386376616|gb|AFJ08042.1| exodeoxyribonuclease III [Prevotella intermedia 17]
gi|444841476|gb|ELX68491.1| exodeoxyribonuclease III (xth) [Prevotella nigrescens F0103]
Length = 250
Score = 95.5 bits (236), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 63/193 (32%), Positives = 99/193 (51%), Gaps = 29/193 (15%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIW 85
+++ +GRVI E E FYL+ Y PN ++ R +W+ Q +V + KP+I
Sbjct: 84 EHDHEGRVITLEMEKFYLVTCYTPNA--QDGLKRLDYRMQWEDDFQAYVKRLDEKKPVIV 141
Query: 86 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 145
CGDLNV+HEEID+ +P K + GF+ ER + L G ID+
Sbjct: 142 CGDLNVAHEEIDLKNP---------------KTNRKNAGFSDEERAKMTQFLGNG-FIDS 185
Query: 146 YRFLHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGF 204
+R L+ E+ +S WS + + RIDYF++S L+++++ ++
Sbjct: 186 FRTLYPEQ---VTYSWWSYRFKAREKNAGWRIDYFLLSNRLREQLVDAKIHTE------V 236
Query: 205 YGSDHCPVSLELS 217
YGSDHCPV +EL+
Sbjct: 237 YGSDHCPVEVELN 249
>gi|354558981|ref|ZP_08978234.1| exodeoxyribonuclease III [Desulfitobacterium metallireducens DSM
15288]
gi|353545305|gb|EHC14757.1| exodeoxyribonuclease III [Desulfitobacterium metallireducens DSM
15288]
Length = 251
Score = 95.5 bits (236), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 60/191 (31%), Positives = 95/191 (49%), Gaps = 26/191 (13%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIW 85
+++ +GRVI EFE FY++ Y PN+ + E + R KW+ ++ KP+I+
Sbjct: 84 EHDQEGRVITLEFEKFYMVTVYTPNS--QRELARLEYRMKWEDDFLHYLRDLEQLKPVIF 141
Query: 86 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 145
CGDLNV+H+EID+ +P K + GF+ ER + ++ +G D
Sbjct: 142 CGDLNVAHKEIDLKNP---------------KANKNNAGFSAEERGKLTRVMDQG-FTDT 185
Query: 146 YRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 205
+R+ + E+ + WS + RIDYF VS ELKD++ +
Sbjct: 186 FRYFYPEQ-TEAYTWWSYMFNARANNAGWRIDYFCVSAELKDQL------KDAVIYNDVL 238
Query: 206 GSDHCPVSLEL 216
GSDHCP+ LE+
Sbjct: 239 GSDHCPIGLEI 249
>gi|260589662|ref|ZP_05855575.1| exodeoxyribonuclease III [Blautia hansenii DSM 20583]
gi|331083093|ref|ZP_08332210.1| exodeoxyribonuclease [Lachnospiraceae bacterium 6_1_63FAA]
gi|260539902|gb|EEX20471.1| exodeoxyribonuclease III [Blautia hansenii DSM 20583]
gi|330405095|gb|EGG84632.1| exodeoxyribonuclease [Lachnospiraceae bacterium 6_1_63FAA]
Length = 251
Score = 95.5 bits (236), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 57/191 (29%), Positives = 97/191 (50%), Gaps = 26/191 (13%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIW 85
+++ +GRVI E+E FY++ Y PN+ + E R +W+ + ++ Q KP+I
Sbjct: 84 EHDQEGRVITLEYENFYMVTVYTPNS--QSELARLSYRMQWEDDFRAYLQQLDEKKPVIM 141
Query: 86 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 145
CGDLNV+H+EID+ +P K + GFT ER++F L G D
Sbjct: 142 CGDLNVAHQEIDLKNP---------------KTNRHNAGFTDEEREKFTTFLDAG-FTDT 185
Query: 146 YRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 205
+R+ + +K + WS + + RIDYF S+ L +++++ + +
Sbjct: 186 FRYFYPDKTEIYSW-WSYRFKAREKNAGWRIDYFCTSKRLDEKLLSASIHT------DIF 238
Query: 206 GSDHCPVSLEL 216
GSDHCPV +++
Sbjct: 239 GSDHCPVEVQI 249
>gi|399925203|ref|ZP_10782561.1| exodeoxyribonuclease III [Peptoniphilus rhinitidis 1-13]
Length = 254
Score = 95.5 bits (236), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 64/192 (33%), Positives = 103/192 (53%), Gaps = 28/192 (14%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIW 85
+++ +GRVI EFE FY + Y PN+ K E + R+ W+ + ++ + K +I
Sbjct: 87 EHDKEGRVITLEFENFYFVTCYTPNSKRKLERLDY--RQVWEDDFRNYLNELRKNKEVIL 144
Query: 86 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 145
CGDLNV+H+EID+++P N++ GFT ER++F +LK G ID
Sbjct: 145 CGDLNVAHKEIDLANP------------STNRK---SAGFTDEEREKFTELLKNG-YIDT 188
Query: 146 YRFLHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGF 204
+R+ + D+ +S WS + R RIDYF+VSE L+ ++ ++ +
Sbjct: 189 FRYFY--PDLKDEYSWWSYFAKSRERNVGWRIDYFVVSEGLEKHLVDAKIHQEVM----- 241
Query: 205 YGSDHCPVSLEL 216
GSDHCPV L++
Sbjct: 242 -GSDHCPVELKI 252
>gi|233305|gb|AAB19427.1| Rrp1=recombination repair protein 1 [Drosophila, Peptide, 253 aa]
Length = 253
Score = 95.5 bits (236), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 59/184 (32%), Positives = 95/184 (51%), Gaps = 26/184 (14%)
Query: 32 GRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGDLN 90
GR+I AE+E FYL+N Y PN+G K + + R +W+K Q +V + KP++ CGD+N
Sbjct: 91 GRMITAEYEKFYLINVYVPNSGRKLV--NLEPRMRWEKLFQAYVKKLDALKPVVICGDMN 148
Query: 91 VSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLH 150
VSH ID+ +P K + GFT ER + +L G +D +R L+
Sbjct: 149 VSHMPIDLENP---------------KNNTKNAGFTQEERDKMTELLGLG-FVDTFRHLY 192
Query: 151 KEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHC 210
++ F W+ + R R+DY +VSE +++ E++ + GSDHC
Sbjct: 193 PDRKGAYTF-WTYMANARARNVGWRLDYCLVSERFVPKVVEHEIRSQCL------GSDHC 245
Query: 211 PVSL 214
P+++
Sbjct: 246 PITI 249
>gi|221330655|ref|NP_001137776.1| recombination repair protein 1, isoform B [Drosophila melanogaster]
gi|220901923|gb|ACL82983.1| recombination repair protein 1, isoform B [Drosophila melanogaster]
Length = 706
Score = 95.5 bits (236), Expect = 2e-17, Method: Composition-based stats.
Identities = 59/189 (31%), Positives = 98/189 (51%), Gaps = 26/189 (13%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIW 85
+++ GR+I AE+E FYL+N Y PN+G K + + R +W+K Q +V + KP++
Sbjct: 539 EFDDVGRMITAEYEKFYLINVYVPNSGRKLV--NLEPRMRWEKLFQAYVKKLDALKPVVI 596
Query: 86 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 145
CGD+NVSH ID+ +P K + GFT ER + +L G +D
Sbjct: 597 CGDMNVSHMPIDLENP---------------KNNTKNAGFTQEERDKMTELLGLG-FVDT 640
Query: 146 YRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 205
+R L+ ++ F W+ + R R+DY +VSE +++ E++ +
Sbjct: 641 FRHLYPDRKGAYTF-WTYMANARARNVGWRLDYCLVSERFVPKVVEHEIRSQCL------ 693
Query: 206 GSDHCPVSL 214
GSDHCP+++
Sbjct: 694 GSDHCPITI 702
>gi|145355749|ref|XP_001422113.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144582353|gb|ABP00430.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 273
Score = 95.5 bits (236), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 66/199 (33%), Positives = 101/199 (50%), Gaps = 29/199 (14%)
Query: 23 LSALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFV--LQCSG 80
LSA ++ +GRV+ AE ++ +++N Y PN+G + + +R W++ I+E V L+ G
Sbjct: 99 LSAGGFDDEGRVLTAELDSCFVVNAYVPNSG-ADLKRLPERVEVWERAIREHVRALESRG 157
Query: 81 KPLIWCGDLNVSHEEIDV--SHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILK 138
K +I+CGDLNV+HEEID+ H E +A GFT ER +L+
Sbjct: 158 KAVIYCGDLNVAHEEIDLWGRHAENSKSA----------------GFTPEERAAMTRLLE 201
Query: 139 EGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHG 198
E L+D +R H+ D WS + + + R+DY + S L D I+
Sbjct: 202 ECDLVDTFR-AHR-PDARAFTYWSYRAGAREKNRGWRLDYILASRRLADSIV------DA 253
Query: 199 IELEGFYGSDHCPVSLELS 217
L GSDHCPV L ++
Sbjct: 254 YALPDVLGSDHCPVGLRVA 272
>gi|339521855|gb|AEJ84092.1| DNA-(apurinic or apyrimidinic site) lyase [Capra hircus]
Length = 318
Score = 95.5 bits (236), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 61/192 (31%), Positives = 103/192 (53%), Gaps = 25/192 (13%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQ-CSGKPLIW 85
+++ +GRVI+A ++ F L+ Y PN G + R++WD+ ++F+ S KPL+
Sbjct: 150 EHDQEGRVIVAGYDAFVLVTAYVPNAG--RGLVRLEYRQRWDEAFRKFLKGLASRKPLVL 207
Query: 86 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 145
CGDLNV+HEE DV +P+ NK++ GFT ER+ FG +L+ L D+
Sbjct: 208 CGDLNVAHEESDVRNPKG------------NKKN---AGFTPQERQGFGELLQAVPLTDS 252
Query: 146 YRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 205
+R L+ F W+ + + R+DYF++S+ L + +++ +
Sbjct: 253 FRHLYPNTAYAYTF-WTYMMNARSKNVGWRLDYFLLSQSLLPAVCDSKIRSKAL------ 305
Query: 206 GSDHCPVSLELS 217
GSDHCP++L L+
Sbjct: 306 GSDHCPITLYLA 317
>gi|421526611|ref|ZP_15973218.1| exodeoxyribonuclease III [Fusobacterium nucleatum ChDC F128]
gi|402257168|gb|EJU07643.1| exodeoxyribonuclease III [Fusobacterium nucleatum ChDC F128]
Length = 253
Score = 95.5 bits (236), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 64/196 (32%), Positives = 95/196 (48%), Gaps = 28/196 (14%)
Query: 23 LSALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGK 81
L +++ +GRVI EFE FY++ Y PN+ K+E R W+ ++++ K
Sbjct: 80 LGIEEHDKEGRVITLEFEKFYMITVYTPNS--KDELQRLDYRMVWEDEFRKYLKNLEKKK 137
Query: 82 PLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGR 141
P++ CGDLNV+H+EID+ +P K + GFT ER +F +L G
Sbjct: 138 PVVVCGDLNVAHKEIDLKNP---------------KTNRRNAGFTDEERGKFTELLAAG- 181
Query: 142 LIDAYRFLHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIE 200
D +R H D++ +S WS + RIDYF+VS L ++ E+
Sbjct: 182 FTDTFR--HFYPDLEHAYSWWSYRANARKNNTGWRIDYFVVSNALDKYLVDAEIHAQT-- 237
Query: 201 LEGFYGSDHCPVSLEL 216
GSDHCPV L L
Sbjct: 238 ----EGSDHCPVVLFL 249
>gi|339448653|ref|ZP_08652209.1| exodeoxyribonuclease III Xth [Lactobacillus fructivorans KCTC 3543]
Length = 256
Score = 95.5 bits (236), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 60/185 (32%), Positives = 96/185 (51%), Gaps = 26/185 (14%)
Query: 31 DGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGDL 89
+GR + E+ FYL+NTY PN+G EE R WD++ FV + +G KP+I GD+
Sbjct: 89 EGRCLTLEYPDFYLINTYVPNSG--EELQRLDYRLDWDQKFITFVNKLTGTKPVIIGGDM 146
Query: 90 NVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFL 149
+V+++ ID+ PE ED + G+T ER FG +L G +D +R L
Sbjct: 147 SVAYQPIDIDDPE---------------EDHHKAGYTQQERDDFGRLLASG-FVDTFRAL 190
Query: 150 HKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDH 209
H + + WS + R + R+DYF+VS+ +++ + + G+ + GSDH
Sbjct: 191 HPHQSGAYTW-WSYRYDERARDRGWRMDYFLVSDSIQNDVAESNILGNVM------GSDH 243
Query: 210 CPVSL 214
P+ L
Sbjct: 244 APIQL 248
>gi|365854004|ref|ZP_09394256.1| exodeoxyribonuclease III [Lactobacillus parafarraginis F0439]
gi|363711540|gb|EHL95270.1| exodeoxyribonuclease III [Lactobacillus parafarraginis F0439]
Length = 250
Score = 95.5 bits (236), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 65/192 (33%), Positives = 96/192 (50%), Gaps = 28/192 (14%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIW 85
+++ +GR I E+ FYL+ +Y PN+G + F R WD Q+++ + KP+I
Sbjct: 84 EFDHEGRAITLEYPDFYLVTSYVPNSGAGLKRLDF--RMGWDAAFQDYLSRLDKEKPVIL 141
Query: 86 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 145
CGDLNV+H+ ID+ +P+ + GFT ER F L G +D+
Sbjct: 142 CGDLNVAHKTIDLKNPQ---------------SNHHNAGFTDEERDSFTRFLDMG-FMDS 185
Query: 146 YRFLHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGF 204
+R H DM+ +S WS + R RIDYF+ S L +I ++ L
Sbjct: 186 FR--HFYPDMEDIYSWWSYRFHARDRNAGWRIDYFVTSNRLAPKIADSKI------LTDI 237
Query: 205 YGSDHCPVSLEL 216
YGSDHCPV+L L
Sbjct: 238 YGSDHCPVALIL 249
>gi|426200016|gb|EKV49940.1| hypothetical protein AGABI2DRAFT_190373 [Agaricus bisporus var.
bisporus H97]
Length = 326
Score = 95.5 bits (236), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 65/213 (30%), Positives = 105/213 (49%), Gaps = 40/213 (18%)
Query: 20 HFLLSALKYEPD--------GRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRI 71
H LS K P+ GR+I EFE +YL+ TY N G E + + +++W++
Sbjct: 132 HKPLSVTKTLPNHPNPDLVKGRIITLEFEGYYLIGTYVVNAG--VELKTLEDKKEWNQHF 189
Query: 72 QEFVLQCSG-KPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQ-PGFTIAE 129
+ ++ KP+IW GDLNV+ ID+++ K +W + PG+T AE
Sbjct: 190 ENYIRDLDKVKPVIWTGDLNVAPTAIDLAN---------------AKRNWNKTPGYTEAE 234
Query: 130 RKRFGAILKE------GRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSE 183
F IL G+ +D +R LH + FS+ N + +G R+D F++SE
Sbjct: 235 TTSFKNILDPPEDVDAGKFVDVWRQLHPKDQHYTYFSYRFN--CRLKGLGWRLDMFVLSE 292
Query: 184 ELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 216
+ +R+ CE++ E + SDHCPV +E+
Sbjct: 293 RIAERVKMCEIRS-----EIYGASDHCPVVVEV 320
>gi|422932904|ref|ZP_16965829.1| exodeoxyribonuclease III [Fusobacterium nucleatum subsp. animalis
ATCC 51191]
gi|339891952|gb|EGQ80860.1| exodeoxyribonuclease III [Fusobacterium nucleatum subsp. animalis
ATCC 51191]
Length = 253
Score = 95.5 bits (236), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 67/202 (33%), Positives = 104/202 (51%), Gaps = 38/202 (18%)
Query: 23 LSALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGK 81
L +++ +GRVI EFE FY++ Y PN+ K+E R W+ ++++ K
Sbjct: 80 LGIEEHDKEGRVITLEFEKFYMVTVYTPNS--KDELLRLDYRMVWEDEFRKYLKNLEKKK 137
Query: 82 PLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGR 141
P++ CGDLNV+H+EID+ +P K + GFT ER +F +L G
Sbjct: 138 PVVVCGDLNVAHKEIDLKNP---------------KTNRRNAGFTDEERGKFTELLDSG- 181
Query: 142 LIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRM------RIDYFIVSEELKDRIIACEMQ 195
ID +R+ + +++ +SW YRG+ RIDYF+VS+ L+ ++ E+
Sbjct: 182 FIDTFRYFY--PNLEQVYSWWS-----YRGRARENNTGWRIDYFVVSKGLEKNLVDAEIH 234
Query: 196 GHGIELEGFYGSDHCPVSLELS 217
IE GSDHCPV L L+
Sbjct: 235 TQ-IE-----GSDHCPVVLFLN 250
>gi|409082189|gb|EKM82547.1| hypothetical protein AGABI1DRAFT_111155 [Agaricus bisporus var.
burnettii JB137-S8]
Length = 326
Score = 95.5 bits (236), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 65/213 (30%), Positives = 105/213 (49%), Gaps = 40/213 (18%)
Query: 20 HFLLSALKYEPD--------GRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRI 71
H LS K P+ GR+I EFE +YL+ TY N G E + + +++W++
Sbjct: 132 HKPLSVTKTLPNHPNPDLVKGRIITLEFEGYYLIGTYVVNAG--VELKTLEDKKEWNQHF 189
Query: 72 QEFVLQCSG-KPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQ-PGFTIAE 129
+ ++ KP+IW GDLNV+ ID+++ K +W + PG+T AE
Sbjct: 190 ENYIRDLDKVKPVIWTGDLNVAPTAIDLAN---------------AKRNWNKTPGYTEAE 234
Query: 130 RKRFGAILKE------GRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSE 183
F IL G+ +D +R LH + FS+ N + +G R+D F++SE
Sbjct: 235 TSSFKNILDPPEDVDAGKFVDVWRQLHPKDQHYTYFSYRFN--CRLKGLGWRLDMFVLSE 292
Query: 184 ELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 216
+ +R+ CE++ E + SDHCPV +E+
Sbjct: 293 RIAERVKMCEIRS-----EIYGASDHCPVVVEV 320
>gi|336401875|ref|ZP_08582631.1| exodeoxyribonuclease [Fusobacterium sp. 21_1A]
gi|336160344|gb|EGN63396.1| exodeoxyribonuclease [Fusobacterium sp. 21_1A]
Length = 253
Score = 95.5 bits (236), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 67/202 (33%), Positives = 104/202 (51%), Gaps = 38/202 (18%)
Query: 23 LSALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGK 81
L +++ +GRVI EFE FY++ Y PN+ K+E R W+ ++++ K
Sbjct: 80 LGIEEHDKEGRVITLEFEKFYMVTVYTPNS--KDELLRLDYRMVWEDEFRKYLKNLEKKK 137
Query: 82 PLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGR 141
P++ CGDLNV+H+EID+ +P K + GFT ER +F +L G
Sbjct: 138 PVVVCGDLNVAHKEIDLKNP---------------KTNRRNAGFTDEERGKFTELLDSG- 181
Query: 142 LIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRM------RIDYFIVSEELKDRIIACEMQ 195
ID +R+ + +++ +SW YRG+ RIDYF+VS+ L+ ++ E+
Sbjct: 182 FIDTFRYFY--PNLEQVYSWWS-----YRGRARENNAGWRIDYFVVSKGLEKNLVDAEIH 234
Query: 196 GHGIELEGFYGSDHCPVSLELS 217
IE GSDHCPV L L+
Sbjct: 235 TQ-IE-----GSDHCPVVLFLN 250
>gi|260495692|ref|ZP_05815815.1| exodeoxyribonuclease III [Fusobacterium sp. 3_1_33]
gi|260196757|gb|EEW94281.1| exodeoxyribonuclease III [Fusobacterium sp. 3_1_33]
Length = 253
Score = 95.1 bits (235), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 67/202 (33%), Positives = 104/202 (51%), Gaps = 38/202 (18%)
Query: 23 LSALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGK 81
L +++ +GRVI EFE FY++ Y PN+ K+E R W+ ++++ K
Sbjct: 80 LGIEEHDKEGRVITLEFEKFYMVTVYTPNS--KDELLRLDYRMVWEDEFRKYLKNLEKKK 137
Query: 82 PLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGR 141
P++ CGDLNV+H+EID+ +P K + GFT ER +F +L G
Sbjct: 138 PVVACGDLNVAHKEIDLKNP---------------KTNRRNAGFTDEERGKFTELLDSG- 181
Query: 142 LIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRM------RIDYFIVSEELKDRIIACEMQ 195
ID +R+ + +++ +SW YRG+ RIDYF+VS+ L+ ++ E+
Sbjct: 182 FIDTFRYFY--PNLEQVYSWWS-----YRGRARENNAGWRIDYFVVSKGLEKNLVDAEIH 234
Query: 196 GHGIELEGFYGSDHCPVSLELS 217
IE GSDHCPV L L+
Sbjct: 235 TQ-IE-----GSDHCPVVLFLN 250
>gi|406882429|gb|EKD30227.1| hypothetical protein ACD_78C00115G0011 [uncultured bacterium (gcode
4)]
Length = 254
Score = 95.1 bits (235), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 61/191 (31%), Positives = 100/191 (52%), Gaps = 26/191 (13%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIW 85
+++ +GR+I EFE ++ + Y PN K E + R+ WD +++ + KP+I
Sbjct: 88 EHDTEGRIITLEFEEYFFVTVYTPNA--KRELERLEYRQLWDSLFFDYLKRLEAEKPVIV 145
Query: 86 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 145
GDLNV+H++ID+S+P K + G GFT ER FG L +G ID
Sbjct: 146 SGDLNVAHKDIDLSNP---------------KANRGSAGFTDEERDGFGKFLSDG-FIDT 189
Query: 146 YRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 205
+R + K + + WS + R R+DYF++SE L++R+ + ++ +
Sbjct: 190 FRHFYPNKTEEYTW-WSNFFHARDRNIGWRLDYFLISEWLRERLKSAFIR------QEIR 242
Query: 206 GSDHCPVSLEL 216
GSDHCPV +E+
Sbjct: 243 GSDHCPVGVEI 253
>gi|284047996|ref|YP_003398335.1| exodeoxyribonuclease III [Acidaminococcus fermentans DSM 20731]
gi|283952217|gb|ADB47020.1| exodeoxyribonuclease III [Acidaminococcus fermentans DSM 20731]
Length = 250
Score = 95.1 bits (235), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 66/197 (33%), Positives = 100/197 (50%), Gaps = 32/197 (16%)
Query: 23 LSALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-- 80
L +++ +GRVI AE+ FYL+N Y PN+ + + R +W+ Q++ C+G
Sbjct: 80 LGQEEHDQEGRVITAEYPDFYLVNVYTPNS--QRGLTRLEYRMQWEDVFQDY---CAGLA 134
Query: 81 --KPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILK 138
KP+I CGDLNV+ + ID+ +P+ + GFT ER +F L
Sbjct: 135 RKKPVIVCGDLNVAAQPIDLKNPD---------------SNHKNAGFTDEERAKFQQFLD 179
Query: 139 EGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHG 198
G +D++R L+ +K+ + WS + R RIDYF+VS+ KDRI +
Sbjct: 180 HG-FVDSFRSLYPDKEGAYTW-WSYMFKARERNAGWRIDYFLVSQNGKDRIQDVIIHNEV 237
Query: 199 IELEGFYGSDHCPVSLE 215
+ GSDHCPV LE
Sbjct: 238 M------GSDHCPVELE 248
>gi|189238676|ref|XP_969559.2| PREDICTED: similar to ap endonuclease [Tribolium castaneum]
Length = 1246
Score = 95.1 bits (235), Expect = 2e-17, Method: Composition-based stats.
Identities = 61/191 (31%), Positives = 99/191 (51%), Gaps = 26/191 (13%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIW 85
+++ +GR I E+ETF+++N Y P+ G + +R W+++ ++F+ S KP+I
Sbjct: 1079 EHDTEGRCITVEYETFFVVNVYVPHAG--RNLVTLPKRLDWNEQFEKFIKNLDSQKPVII 1136
Query: 86 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 145
CGD+NV+H+EID+++P K + GF++ ER A L G +D
Sbjct: 1137 CGDMNVAHKEIDLANP---------------KTNTNSAGFSVEERDGMTAFLGNG-YVDI 1180
Query: 146 YRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 205
YR L+ EK+ F W + R+DYF+VS+ D + C+ H
Sbjct: 1181 YRHLYPEKEKAYTF-WIYMRNARPNNVGWRLDYFLVSQRFVDNV--CDNIIH----SDVM 1233
Query: 206 GSDHCPVSLEL 216
GSDHCP+SL +
Sbjct: 1234 GSDHCPLSLHI 1244
>gi|269216697|ref|ZP_06160551.1| exodeoxyribonuclease III [Slackia exigua ATCC 700122]
gi|269129931|gb|EEZ61014.1| exodeoxyribonuclease III [Slackia exigua ATCC 700122]
Length = 264
Score = 95.1 bits (235), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 67/215 (31%), Positives = 98/215 (45%), Gaps = 43/215 (20%)
Query: 18 VFHFLLSALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFV-- 75
V H AL E GR+ EFE F+ ++ Y PN + E + R WD +EF
Sbjct: 77 VHHVGTPALDTE--GRICACEFEKFWFVDVYTPNA--QPELARLEHRMAWDAAFREFCKN 132
Query: 76 ------------LQCSGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQP 123
KP+I CGD NV+H+EID+ +P + + G P
Sbjct: 133 LEAGVVPEGLGYASAEPKPVIMCGDFNVAHQEIDLKNP---------------RSNRGNP 177
Query: 124 GFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVS 182
GF+ ER F ++L G D +R LH D++ +S WS + RIDYF+VS
Sbjct: 178 GFSDEERSSFTSLLDAG-FADTFRMLH--PDLEGAYSWWSYRFNARKNNAGWRIDYFLVS 234
Query: 183 EELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 217
+ L+ I + + + GSDHCPV L+++
Sbjct: 235 DALRGAIESASI------YDEVMGSDHCPVGLDIA 263
>gi|254302413|ref|ZP_04969771.1| exodeoxyribonuclease III [Fusobacterium nucleatum subsp.
polymorphum ATCC 10953]
gi|148322605|gb|EDK87855.1| exodeoxyribonuclease III [Fusobacterium nucleatum subsp.
polymorphum ATCC 10953]
Length = 253
Score = 95.1 bits (235), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 67/201 (33%), Positives = 103/201 (51%), Gaps = 38/201 (18%)
Query: 23 LSALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGK 81
L +++ +GRVI EFE FY++ Y PN+ K+E R W+ ++++ K
Sbjct: 80 LGIEEHDKEGRVITLEFEKFYMVTVYTPNS--KDELLRLDYRMVWEDEFRKYLKNLEKKK 137
Query: 82 PLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGR 141
P++ CGDLNV+H+EID+ +P K + GFT ER +F +L G
Sbjct: 138 PVVVCGDLNVAHKEIDLKNP---------------KTNRRNAGFTDEERGKFTELLDSG- 181
Query: 142 LIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRM------RIDYFIVSEELKDRIIACEMQ 195
ID +R+ + +++ +SW YRG+ RIDYF+VS+ L+ ++ E+
Sbjct: 182 FIDTFRYFY--PNLEQVYSWWS-----YRGRARENNAGWRIDYFVVSKGLEKNLVDAEIH 234
Query: 196 GHGIELEGFYGSDHCPVSLEL 216
IE GSDHCPV L L
Sbjct: 235 SQ-IE-----GSDHCPVVLFL 249
>gi|300726843|ref|ZP_07060273.1| exodeoxyribonuclease III [Prevotella bryantii B14]
gi|299775956|gb|EFI72536.1| exodeoxyribonuclease III [Prevotella bryantii B14]
Length = 250
Score = 95.1 bits (235), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 59/188 (31%), Positives = 96/188 (51%), Gaps = 29/188 (15%)
Query: 31 DGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGDL 89
+GRVI E++ F+L+ Y PN+ + E R W+K Q ++ + KP+I CGD+
Sbjct: 88 EGRVITLEYDNFFLVTVYTPNS--QNELKRLNYRMIWEKDFQTYLHKLDKRKPIIVCGDM 145
Query: 90 NVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFL 149
NV+H+EID+ +P K + GFT ER++ +L G D +RF
Sbjct: 146 NVAHQEIDIKNP---------------KTNHKSAGFTDEEREKMTQLLSNG-FTDTFRFK 189
Query: 150 HKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSD 208
+ E+ +S WS + + RIDYF+VS+ +K++++ ++ GSD
Sbjct: 190 YPEQ---ITYSWWSYRFRAREKNAGWRIDYFLVSDRIKEKVLDAKIH------TDIMGSD 240
Query: 209 HCPVSLEL 216
HCPV L +
Sbjct: 241 HCPVELTI 248
>gi|289766441|ref|ZP_06525819.1| exodeoxyribonuclease III [Fusobacterium sp. D11]
gi|289717996|gb|EFD82008.1| exodeoxyribonuclease III [Fusobacterium sp. D11]
Length = 253
Score = 95.1 bits (235), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 67/202 (33%), Positives = 104/202 (51%), Gaps = 38/202 (18%)
Query: 23 LSALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGK 81
L +++ +GRVI EFE FY++ Y PN+ K+E R W+ ++++ K
Sbjct: 80 LGIEEHDKEGRVITLEFEKFYMVTVYTPNS--KDELLRLDYRMIWEDEFRKYLKNLEKKK 137
Query: 82 PLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGR 141
P++ CGDLNV+H+EID+ +P K + GFT ER +F +L G
Sbjct: 138 PVVVCGDLNVAHKEIDLKNP---------------KTNRRNAGFTDEERGKFTELLDSG- 181
Query: 142 LIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRM------RIDYFIVSEELKDRIIACEMQ 195
ID +R+ + +++ +SW YRG+ RIDYF+VS+ L+ ++ E+
Sbjct: 182 FIDTFRYFY--PNLEQVYSWWS-----YRGRARENNAGWRIDYFVVSKGLEKNLVDAEIH 234
Query: 196 GHGIELEGFYGSDHCPVSLELS 217
IE GSDHCPV L L+
Sbjct: 235 TQ-IE-----GSDHCPVVLFLN 250
>gi|19703399|ref|NP_602961.1| exodeoxyribonuclease III [Fusobacterium nucleatum subsp. nucleatum
ATCC 25586]
gi|296328758|ref|ZP_06871272.1| exodeoxyribonuclease III [Fusobacterium nucleatum subsp. nucleatum
ATCC 23726]
gi|19713467|gb|AAL94260.1| Exodeoxyribonuclease III [Fusobacterium nucleatum subsp. nucleatum
ATCC 25586]
gi|296154093|gb|EFG94897.1| exodeoxyribonuclease III [Fusobacterium nucleatum subsp. nucleatum
ATCC 23726]
Length = 253
Score = 95.1 bits (235), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 67/201 (33%), Positives = 103/201 (51%), Gaps = 38/201 (18%)
Query: 23 LSALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGK 81
L +++ +GRVI EFE FY++ Y PN+ K+E R W+ ++++ K
Sbjct: 80 LGIEEHDKEGRVITLEFEKFYMVTVYTPNS--KDELLRLDYRMVWEDEFRKYLKNLEKKK 137
Query: 82 PLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGR 141
P++ CGDLNV+H+EID+ +P K + GFT ER +F +L G
Sbjct: 138 PVVVCGDLNVAHKEIDLKNP---------------KTNRRNAGFTDEERGKFTELLDSG- 181
Query: 142 LIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRM------RIDYFIVSEELKDRIIACEMQ 195
ID +R+ + +++ +SW YRG+ RIDYF+VS+ L+ ++ E+
Sbjct: 182 FIDTFRYFY--PNLEQVYSWWS-----YRGRARENNAGWRIDYFVVSKGLEKSLVDAEIH 234
Query: 196 GHGIELEGFYGSDHCPVSLEL 216
IE GSDHCPV L L
Sbjct: 235 SQ-IE-----GSDHCPVVLFL 249
>gi|402828442|ref|ZP_10877330.1| exodeoxyribonuclease III [Slackia sp. CM382]
gi|402286525|gb|EJU34996.1| exodeoxyribonuclease III [Slackia sp. CM382]
Length = 264
Score = 95.1 bits (235), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 67/215 (31%), Positives = 98/215 (45%), Gaps = 43/215 (20%)
Query: 18 VFHFLLSALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFV-- 75
V H AL E GR+ EFE F+ ++ Y PN + E + R WD +EF
Sbjct: 77 VHHVGTPALDTE--GRICACEFEKFWFVDVYTPNA--QPELARLEHRMAWDAAFREFCKN 132
Query: 76 ------------LQCSGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQP 123
KP+I CGD NV+H+EID+ +P + + G P
Sbjct: 133 LEAGVVPEGLGYASAEPKPVIMCGDFNVAHQEIDLKNP---------------RSNRGSP 177
Query: 124 GFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVS 182
GF+ ER F ++L G D +R LH D++ +S WS + RIDYF+VS
Sbjct: 178 GFSDEERSSFTSLLDAG-FADTFRMLH--PDLEGAYSWWSYRFNARKNNAGWRIDYFLVS 234
Query: 183 EELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 217
+ L+ I + + + GSDHCPV L+++
Sbjct: 235 DALRGAIESASI------YDEVMGSDHCPVGLDIA 263
>gi|402301696|ref|ZP_10820957.1| exodeoxyribonuclease [Bacillus alcalophilus ATCC 27647]
gi|401723230|gb|EJS96766.1| exodeoxyribonuclease [Bacillus alcalophilus ATCC 27647]
Length = 250
Score = 95.1 bits (235), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 66/189 (34%), Positives = 92/189 (48%), Gaps = 26/189 (13%)
Query: 29 EPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCG 87
+ +GRVI E+ FYL+ Y PN+ K + + R W++ ++ KP+I CG
Sbjct: 86 DQEGRVIALEYSKFYLVTCYTPNS--KRDLSRLPYRLSWEEHFLAYLKNLEEKKPVILCG 143
Query: 88 DLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYR 147
DLNV+H EID+ + K + G GFT ER + +L G D++R
Sbjct: 144 DLNVAHTEIDLKNA---------------KSNHGNSGFTQEERGKMTTLLSSG-FTDSFR 187
Query: 148 FLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGS 207
+L+ E D WS + R RIDYFIVS EL + I E+ + GS
Sbjct: 188 YLYPET-TDKYSWWSYMNKVRERNIGWRIDYFIVSNELTNSIKKAEIHNEIL------GS 240
Query: 208 DHCPVSLEL 216
DHCPV LEL
Sbjct: 241 DHCPVFLEL 249
>gi|310659330|ref|YP_003937051.1| exodeoxyribonuclease III [[Clostridium] sticklandii]
gi|308826108|emb|CBH22146.1| exodeoxyribonuclease III [[Clostridium] sticklandii]
Length = 250
Score = 95.1 bits (235), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 62/190 (32%), Positives = 96/190 (50%), Gaps = 26/190 (13%)
Query: 28 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 86
++ +GRVI E++ FYL+N Y PN + + + R +W+ + ++ KP+I C
Sbjct: 85 HDTEGRVITLEYDNFYLVNVYTPNA--QPKLARLEYRMQWEDDFRRYLNDLDEKKPVIVC 142
Query: 87 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 146
GDLNV+H EID+ +P K + PGF+ ER +F +L G ID++
Sbjct: 143 GDLNVAHNEIDLKNP---------------KSNRKNPGFSDEERGKFTNLLDSG-FIDSF 186
Query: 147 RFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYG 206
RF + + + WS + RIDYF VS +LK+ + E+ + G
Sbjct: 187 RFFYPDA-TEMYTWWSYRFNARENNAGWRIDYFCVSNKLKNELKNAEIHMDIL------G 239
Query: 207 SDHCPVSLEL 216
SDHCPV LE+
Sbjct: 240 SDHCPVVLEI 249
>gi|225420139|ref|ZP_03762442.1| hypothetical protein CLOSTASPAR_06482 [Clostridium asparagiforme
DSM 15981]
gi|225041196|gb|EEG51442.1| hypothetical protein CLOSTASPAR_06482 [Clostridium asparagiforme
DSM 15981]
Length = 251
Score = 95.1 bits (235), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 60/193 (31%), Positives = 101/193 (52%), Gaps = 26/193 (13%)
Query: 23 LSALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-K 81
L +++ +GRVI AEF+ ++++ Y PN+ ++ R +W+ ++ + K
Sbjct: 81 LGIEEHDMEGRVIAAEFQEYFVVTCYTPNS--QDGLARLDYRMEWENAFLAYLKKLEEEK 138
Query: 82 PLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGR 141
P+I+CGDLNV+H+EID+ +P K + GFT ER +F +L G
Sbjct: 139 PVIFCGDLNVAHKEIDLKNP---------------KSNRKNAGFTDEERGKFTDLLGAG- 182
Query: 142 LIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIEL 201
ID +R+ + +++ + WS + + RIDYF SE LKDR+++ ++ +
Sbjct: 183 FIDTFRYFYPDREGIYSW-WSYRFSARAKNAGWRIDYFCASESLKDRLVSADIHTEVM-- 239
Query: 202 EGFYGSDHCPVSL 214
GSDHCPV L
Sbjct: 240 ----GSDHCPVEL 248
>gi|430751698|ref|YP_007214606.1| exodeoxyribonuclease III [Thermobacillus composti KWC4]
gi|430735663|gb|AGA59608.1| exodeoxyribonuclease III [Thermobacillus composti KWC4]
Length = 258
Score = 95.1 bits (235), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 63/197 (31%), Positives = 99/197 (50%), Gaps = 26/197 (13%)
Query: 29 EPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCG 87
+P+GRV+ EF F+L+N Y PN + + + + R W++R + ++ + KP++ CG
Sbjct: 86 DPEGRVLTLEFPAFFLVNVYTPNA--RRDLSRLEYRIAWEERFRAYLKELDARKPVVVCG 143
Query: 88 DLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYR 147
DLNV+H EID+ + +F + G GFT ER+ +L+ G D +R
Sbjct: 144 DLNVAHREIDLKNAKF---------------NRGNAGFTDEEREAMTRLLEAG-FTDTFR 187
Query: 148 FLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGS 207
+ ++ D WS P + R RIDYF+VS L A ++ I+ G GS
Sbjct: 188 HFYPDR-TDAYTWWSFMPKVRERNIGWRIDYFLVSARL-----APYLEDALID-SGIMGS 240
Query: 208 DHCPVSLELSEASSDSE 224
DHCPV L + + E
Sbjct: 241 DHCPVGLLMRDPGEQPE 257
>gi|403366756|gb|EJY83183.1| Exodeoxyribonuclease III family protein [Oxytricha trifallax]
Length = 620
Score = 95.1 bits (235), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 65/198 (32%), Positives = 100/198 (50%), Gaps = 27/198 (13%)
Query: 21 FLLSALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFV--LQC 78
+ + K++ +GR I EFE F+L+ Y PN+G + + + R +WD + ++ L+
Sbjct: 321 YDIGVHKHDKEGRTITLEFEKFFLVGVYVPNSGATLKWHDY-RCSEWDLDFRAYLKGLER 379
Query: 79 SGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILK 138
GKP+I CGD+NV+H+EID+ P K + FT ER+ F K
Sbjct: 380 RGKPVILCGDMNVAHQEIDIFDP---------------KRNERMACFTNEERQSFSNFTK 424
Query: 139 EGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHG 198
G +D +R L+ K + F W + K R+DYF+VS ++K + E+
Sbjct: 425 MG-FVDTFRELYPGK-IKYSF-WDIRDKSRKENKGWRLDYFMVSRQIKHALTDAEIHNE- 480
Query: 199 IELEGFYGSDHCPVSLEL 216
F+GSDHCPVSL L
Sbjct: 481 -----FWGSDHCPVSLTL 493
>gi|150402181|ref|YP_001329475.1| exodeoxyribonuclease III Xth [Methanococcus maripaludis C7]
gi|150033211|gb|ABR65324.1| exodeoxyribonuclease III Xth [Methanococcus maripaludis C7]
Length = 249
Score = 95.1 bits (235), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 66/197 (33%), Positives = 98/197 (49%), Gaps = 35/197 (17%)
Query: 23 LSALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-K 81
+ +++ +GRV+ EF+ +YL+N Y PN+ + + R+KWD+ ++ K
Sbjct: 80 IKNTEHDGEGRVLTLEFDKYYLINVYTPNS--QRGLTRLEYRQKWDQDFLNYIKTLENEK 137
Query: 82 PLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGR 141
P+I+CGDLNV+H+EID+ +P K + GFT ER F I+ G
Sbjct: 138 PVIFCGDLNVAHKEIDLKNP---------------KNNVKNAGFTPEERIGFDNIVDSG- 181
Query: 142 LIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVS----EELKDRIIACEMQGH 197
ID +R +KE D +S+ N K G RIDYF +S + LKD I E+
Sbjct: 182 FIDTFREFNKEPDNYSWWSYRFNARSKNIG--WRIDYFCISKILRDNLKDAFIMSEVM-- 237
Query: 198 GIELEGFYGSDHCPVSL 214
GSDHCPV +
Sbjct: 238 --------GSDHCPVGI 246
>gi|347534242|ref|YP_004840912.1| Exodeoxyribonuclease [Lactobacillus sanfranciscensis TMW 1.1304]
gi|345504298|gb|AEN98980.1| Exodeoxyribonuclease [Lactobacillus sanfranciscensis TMW 1.1304]
Length = 283
Score = 95.1 bits (235), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 66/195 (33%), Positives = 95/195 (48%), Gaps = 28/195 (14%)
Query: 29 EPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWCG 87
+P+GR I E+ FYL+N YAP G EE + +WD+++ FV + + KP+I G
Sbjct: 114 DPEGRAITLEYPNFYLVNVYAPAAG--EELQRLTFKEEWDQKLITFVDKLKATKPVIING 171
Query: 88 DLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYR 147
DLN++HE ID+ PE E GFT AER++ +L G D YR
Sbjct: 172 DLNIAHEPIDIYAPE---------------EHRHAAGFTDAERQQMTQLLDSG-FTDIYR 215
Query: 148 FLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEEL-KDRIIACEMQGHGIELEGFYG 206
H ++ + WS + R+DYFI+S L KD I M + G
Sbjct: 216 ATHPDEPNKYTW-WSYRDHARRDNHGWRLDYFIISNNLVKDVKITTIM-------DTVSG 267
Query: 207 SDHCPVSLELSEASS 221
SDHCP+ L L+ ++
Sbjct: 268 SDHCPLQLILNNLTT 282
>gi|423137872|ref|ZP_17125515.1| exodeoxyribonuclease III (xth) [Fusobacterium nucleatum subsp.
animalis F0419]
gi|371959030|gb|EHO76727.1| exodeoxyribonuclease III (xth) [Fusobacterium nucleatum subsp.
animalis F0419]
Length = 253
Score = 95.1 bits (235), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 67/201 (33%), Positives = 103/201 (51%), Gaps = 38/201 (18%)
Query: 23 LSALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGK 81
L +++ +GRVI EFE FY++ Y PN+ K+E R W+ ++++ K
Sbjct: 80 LGIEEHDKEGRVITLEFEKFYMVTVYTPNS--KDELLRLDYRMVWEDEFRKYLKNLEKKK 137
Query: 82 PLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGR 141
P++ CGDLNV+H+EID+ +P K + GFT ER +F +L G
Sbjct: 138 PVVACGDLNVAHKEIDLKNP---------------KTNRRNAGFTDEERGKFTELLDSG- 181
Query: 142 LIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRM------RIDYFIVSEELKDRIIACEMQ 195
ID +R+ + +++ +SW YRG+ RIDYF+VS+ L+ ++ E+
Sbjct: 182 FIDTFRYFY--PNLEQVYSWWS-----YRGRARENNAGWRIDYFVVSKGLEKNLVDAEIH 234
Query: 196 GHGIELEGFYGSDHCPVSLEL 216
IE GSDHCPV L L
Sbjct: 235 TQ-IE-----GSDHCPVVLFL 249
>gi|89897437|ref|YP_520924.1| hypothetical protein DSY4691 [Desulfitobacterium hafniense Y51]
gi|219670588|ref|YP_002461023.1| exodeoxyribonuclease III [Desulfitobacterium hafniense DCB-2]
gi|89336885|dbj|BAE86480.1| hypothetical protein [Desulfitobacterium hafniense Y51]
gi|219540848|gb|ACL22587.1| exodeoxyribonuclease III Xth [Desulfitobacterium hafniense DCB-2]
Length = 250
Score = 95.1 bits (235), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 64/191 (33%), Positives = 93/191 (48%), Gaps = 26/191 (13%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIW 85
+++ +GRVI EF+TFYL+ Y PN+ + + R W+ ++ KP+I
Sbjct: 84 EHDQEGRVITLEFDTFYLVTVYTPNS--QRDLARLDYRMIWEAEFLGYLKNLEKSKPVIL 141
Query: 86 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 145
CGDLNV+H EID+ +P K + GFT ER +F +LK G ID
Sbjct: 142 CGDLNVAHTEIDLKNP---------------KTNRKNAGFTDEERAKFSELLKNG-FIDT 185
Query: 146 YRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 205
+R + +K + WS + RIDYF VSE LK+ + + +
Sbjct: 186 FRHFNPDKK-EAYTWWSYMFNARANNAGWRIDYFCVSESLKNEL------KDAMIYDQIM 238
Query: 206 GSDHCPVSLEL 216
GSDHCPV LE+
Sbjct: 239 GSDHCPVGLEI 249
>gi|423076274|ref|ZP_17064987.1| exodeoxyribonuclease III [Desulfitobacterium hafniense DP7]
gi|361852634|gb|EHL04857.1| exodeoxyribonuclease III [Desulfitobacterium hafniense DP7]
Length = 250
Score = 95.1 bits (235), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 64/191 (33%), Positives = 93/191 (48%), Gaps = 26/191 (13%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIW 85
+++ +GRVI EF+TFYL+ Y PN+ + + R W+ ++ KP+I
Sbjct: 84 EHDQEGRVITLEFDTFYLVTVYTPNS--QRDLARLDYRMIWEAEFLGYLKNLEKSKPVIL 141
Query: 86 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 145
CGDLNV+H EID+ +P K + GFT ER +F +LK G ID
Sbjct: 142 CGDLNVAHTEIDLKNP---------------KTNRKNAGFTDEERAKFSELLKNG-FIDT 185
Query: 146 YRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 205
+R + +K + WS + RIDYF VSE LK+ + + +
Sbjct: 186 FRHFNPDKK-EAYTWWSYMFNARANNAGWRIDYFCVSESLKNEL------KDAMIYDQIM 238
Query: 206 GSDHCPVSLEL 216
GSDHCPV LE+
Sbjct: 239 GSDHCPVGLEI 249
>gi|293400493|ref|ZP_06644638.1| exodeoxyribonuclease III [Erysipelotrichaceae bacterium 5_2_54FAA]
gi|291305519|gb|EFE46763.1| exodeoxyribonuclease III [Erysipelotrichaceae bacterium 5_2_54FAA]
Length = 253
Score = 95.1 bits (235), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 66/195 (33%), Positives = 103/195 (52%), Gaps = 26/195 (13%)
Query: 23 LSALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GK 81
L +++ +GRVI E+E FYL+ Y PN+ K+ R +W+ + ++ K
Sbjct: 82 LGIDEHDHEGRVITCEYENFYLVCVYTPNS--KDGLLRLDYRMQWEDDFRAYLNALKEKK 139
Query: 82 PLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGR 141
+I CGDLNV+H+EID+ +P K + GFT ER + + + G
Sbjct: 140 SVIVCGDLNVAHKEIDLKNP---------------KTNRRNAGFTDEERAKMTTLQQSG- 183
Query: 142 LIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIEL 201
ID++R+L+ E++ + WS + + RIDYF+VSE+ KD+I Q I
Sbjct: 184 FIDSFRYLYPEQEGIYSW-WSYRFKAREKNAGWRIDYFLVSEDAKDKI-----QEASIHT 237
Query: 202 EGFYGSDHCPVSLEL 216
+ F GSDHCPVSL++
Sbjct: 238 DVF-GSDHCPVSLDI 251
>gi|15899057|ref|NP_343662.1| exodeoxyribonuclease [Sulfolobus solfataricus P2]
gi|284175276|ref|ZP_06389245.1| exodeoxyribonuclease [Sulfolobus solfataricus 98/2]
gi|384432650|ref|YP_005642008.1| exodeoxyribonuclease III Xth [Sulfolobus solfataricus 98/2]
gi|13815592|gb|AAK42452.1| Exodeoxyribonuclease [Sulfolobus solfataricus P2]
gi|261600804|gb|ACX90407.1| exodeoxyribonuclease III Xth [Sulfolobus solfataricus 98/2]
Length = 247
Score = 94.7 bits (234), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 68/196 (34%), Positives = 99/196 (50%), Gaps = 29/196 (14%)
Query: 23 LSALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGK 81
L +++ +GR + E + FYL+N Y P G E F + K++ I+ F+L+ K
Sbjct: 80 LQIKEFDDEGRTVSLELKDFYLINAYFPRAGDNLERLDF--KLKFNNGIENFLLKLREVK 137
Query: 82 PLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGR 141
P+I CGD N++H+ ID + F+ K+ PG T ER F +L G
Sbjct: 138 PVILCGDFNIAHQSIDAA----FSDPKI-------------PGLTPQERAWFTHLLSLG- 179
Query: 142 LIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIEL 201
ID +R+LH +S+ GN K G +R+DY IVSEELKD I ++ L
Sbjct: 180 FIDTFRYLHPNVRKYSWWSYMGNAREKNLG--LRLDYCIVSEELKDSIKMADI------L 231
Query: 202 EGFYGSDHCPVSLELS 217
GSDH P+ LEL+
Sbjct: 232 TDVQGSDHAPIILELT 247
>gi|373452187|ref|ZP_09544104.1| exodeoxyribonuclease III (xth) [Eubacterium sp. 3_1_31]
gi|371967081|gb|EHO84557.1| exodeoxyribonuclease III (xth) [Eubacterium sp. 3_1_31]
Length = 251
Score = 94.7 bits (234), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 66/195 (33%), Positives = 103/195 (52%), Gaps = 26/195 (13%)
Query: 23 LSALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GK 81
L +++ +GRVI E+E FYL+ Y PN+ K+ R +W+ + ++ K
Sbjct: 80 LGIDEHDHEGRVITCEYENFYLVCVYTPNS--KDGLLRLDYRMQWEDDFRAYLNALKEKK 137
Query: 82 PLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGR 141
+I CGDLNV+H+EID+ +P K + GFT ER + + + G
Sbjct: 138 SVIVCGDLNVAHKEIDLKNP---------------KTNRRNAGFTDEERAKMTTLQQSG- 181
Query: 142 LIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIEL 201
ID++R+L+ E++ + WS + + RIDYF+VSE+ KD+I Q I
Sbjct: 182 FIDSFRYLYPEQEGIYSW-WSYRFKAREKNAGWRIDYFLVSEDAKDKI-----QEASIHT 235
Query: 202 EGFYGSDHCPVSLEL 216
+ F GSDHCPVSL++
Sbjct: 236 DVF-GSDHCPVSLDI 249
>gi|340624333|ref|YP_004742786.1| exodeoxyribonuclease III Xth [Methanococcus maripaludis X1]
gi|339904601|gb|AEK20043.1| exodeoxyribonuclease III Xth [Methanococcus maripaludis X1]
Length = 249
Score = 94.7 bits (234), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 67/193 (34%), Positives = 97/193 (50%), Gaps = 35/193 (18%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIW 85
+++ +GRVI +F+ +YLLN Y PN+ + + R+KWD+ +V K P+I+
Sbjct: 84 EHDGEGRVITLKFDEYYLLNVYTPNS--QRGLTRLEYRQKWDQDFLNYVKTLENKKPVIF 141
Query: 86 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 145
CGDLNV+H+EID+ +P K + GFT ER F I+ G +D
Sbjct: 142 CGDLNVAHKEIDLKNP---------------KTNVKNAGFTPEERNGFDNIVNSG-FLDT 185
Query: 146 YRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSE----ELKDRIIACEMQGHGIEL 201
+R +KE D +S+ N K G RIDYF +S+ LKD I E+
Sbjct: 186 FREFNKEPDNYSWWSYRFNARAKNIG--WRIDYFCISKSLKGNLKDAFIMPEVM------ 237
Query: 202 EGFYGSDHCPVSL 214
GSDHCPV +
Sbjct: 238 ----GSDHCPVGI 246
>gi|229580822|ref|YP_002839221.1| exodeoxyribonuclease III Xth [Sulfolobus islandicus Y.N.15.51]
gi|228011538|gb|ACP47299.1| exodeoxyribonuclease III Xth [Sulfolobus islandicus Y.N.15.51]
Length = 247
Score = 94.7 bits (234), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 68/198 (34%), Positives = 96/198 (48%), Gaps = 33/198 (16%)
Query: 23 LSALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGK 81
L +++ +GR + E + FY++N Y P G E F + K++ I+ FVL+ K
Sbjct: 80 LQIKEFDDEGRTVTLELKDFYVINAYFPRAGDNLERLDF--KLKFNNEIENFVLKLRKAK 137
Query: 82 PLIWCGDLNVSHEEID--VSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKE 139
P+I CGD N++H+ ID S+P PG T ER F L
Sbjct: 138 PVILCGDFNIAHQNIDGAFSNPTI-------------------PGLTPQERSWFSHFLSL 178
Query: 140 GRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGI 199
G ID +R+LH +S+ G K G +R+DY IVSEELKDRI ++
Sbjct: 179 G-FIDTFRYLHPNVRKYSWWSYMGKARDKNLG--LRLDYCIVSEELKDRIKMADI----- 230
Query: 200 ELEGFYGSDHCPVSLELS 217
L GSDH P+ LEL+
Sbjct: 231 -LIDIQGSDHAPIILELT 247
>gi|395244503|ref|ZP_10421467.1| Exodeoxyribonuclease III [Lactobacillus hominis CRBIP 24.179]
gi|394483150|emb|CCI82475.1| Exodeoxyribonuclease III [Lactobacillus hominis CRBIP 24.179]
Length = 265
Score = 94.7 bits (234), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 63/192 (32%), Positives = 96/192 (50%), Gaps = 28/192 (14%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIW 85
+++ GR I E+ FY + TY P +G E+ R WD+ ++++L+ + KP+I
Sbjct: 95 EFDQQGRTITLEYPNFYFVTTYVPFSG--EQLQRLDFRIAWDQAFRKYLLKLEANKPVII 152
Query: 86 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 145
GD++V+HE ID++ P E+ GFT ER F +L G D
Sbjct: 153 GGDMSVAHEPIDLAQP---------------SENHHHAGFTEQERDDFTKLLNSG-FTDT 196
Query: 146 YRFLH-KEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGF 204
+R+LH EKD+ WS G+ + + R+DY +VS L +I + L
Sbjct: 197 FRYLHPNEKDIYS--YWSYRYHGREKNEGWRLDYILVSNSLDSKIKKANI------LTEI 248
Query: 205 YGSDHCPVSLEL 216
GSDHCPVSLE+
Sbjct: 249 PGSDHCPVSLEM 260
>gi|259503288|ref|ZP_05746190.1| exodeoxyribonuclease [Lactobacillus antri DSM 16041]
gi|259168743|gb|EEW53238.1| exodeoxyribonuclease [Lactobacillus antri DSM 16041]
Length = 275
Score = 94.7 bits (234), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 63/194 (32%), Positives = 93/194 (47%), Gaps = 35/194 (18%)
Query: 29 EPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQR---RRKWDKRIQEFVLQC-SGKPLI 84
+ +GR+I EF F+L Y PN+G N +R R +WD ++++ + KP+I
Sbjct: 109 DSEGRIITLEFPDFFLTEVYTPNSG-----NGLKRLAEREQWDDCYRDYLHELDQQKPVI 163
Query: 85 WCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLID 144
GD NV+HEEID++HP + GFT ER FG +L G D
Sbjct: 164 ASGDFNVAHEEIDLAHP---------------ANNHHSAGFTDEERTHFGKLLDAG-FTD 207
Query: 145 AYRFLHKEKDMDCGFSWSGNPI--GKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELE 202
++RFLH D +SW + K RIDY+++S+ L DR+ + M G
Sbjct: 208 SFRFLH--PDQAGAYSWWAQRVLTSKQNNSGWRIDYWLISDRLADRVSSSTMIDSGER-- 263
Query: 203 GFYGSDHCPVSLEL 216
DH P+ LE+
Sbjct: 264 ----RDHTPIMLEI 273
>gi|402813355|ref|ZP_10862950.1| exodeoxyribonuclease ExoA [Paenibacillus alvei DSM 29]
gi|402509298|gb|EJW19818.1| exodeoxyribonuclease ExoA [Paenibacillus alvei DSM 29]
Length = 263
Score = 94.7 bits (234), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 65/204 (31%), Positives = 105/204 (51%), Gaps = 29/204 (14%)
Query: 29 EPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC--SGKPLIWC 86
EP+GR++ EFE+F+L+N Y PN+ + + S R + F LQ + KP+I C
Sbjct: 86 EPEGRILTLEFESFFLVNVYTPNS---KRDLSRLEERLEWEERFRFYLQKLDACKPVIVC 142
Query: 87 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 146
GDLNV+H+ ID+ + +K + G GFT ER++ IL++ D +
Sbjct: 143 GDLNVAHQVIDLKN---------------SKSNHGNSGFTTEEREKM-TILQDAGFTDTF 186
Query: 147 RFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYG 206
R + ++ D WS P + R RIDYF+VS L+D ++ + + G
Sbjct: 187 RHFYPDQ-TDAYTWWSYMPKVRERNIGWRIDYFLVSSRLRDFLVDARIDSN------ILG 239
Query: 207 SDHCPVSLELSEASS-DSEKREKK 229
SDHCP+ L +++ + SE + K+
Sbjct: 240 SDHCPIHLIMNDCDTPQSEDKAKE 263
>gi|325261710|ref|ZP_08128448.1| exodeoxyribonuclease III [Clostridium sp. D5]
gi|324033164|gb|EGB94441.1| exodeoxyribonuclease III [Clostridium sp. D5]
Length = 250
Score = 94.7 bits (234), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 63/192 (32%), Positives = 100/192 (52%), Gaps = 26/192 (13%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIW 85
+++ +GRVI E+E FY + Y PN + E R KW+ + ++ + KP++
Sbjct: 84 EHDQEGRVITLEYEDFYFVTVYTPNA--QNELARLDYRMKWEDDFRAWLKKLEENKPVVV 141
Query: 86 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 145
GD+NV+H+EID+ +P K + GF+ ER++F +L G ID
Sbjct: 142 TGDMNVAHKEIDLKNP---------------KTNRKSAGFSDEERQKFTELLDAG-FIDT 185
Query: 146 YRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 205
+R+ + +++ + WS + + RIDYF VSE LKDR++ GI L
Sbjct: 186 FRYFYPDQEGIYSW-WSYRFRAREKNAGWRIDYFCVSECLKDRLVDA-----GI-LTDIM 238
Query: 206 GSDHCPVSLELS 217
GSDHCPV LE++
Sbjct: 239 GSDHCPVVLEMN 250
>gi|256545331|ref|ZP_05472695.1| exodeoxyribonuclease III [Anaerococcus vaginalis ATCC 51170]
gi|256399012|gb|EEU12625.1| exodeoxyribonuclease III [Anaerococcus vaginalis ATCC 51170]
Length = 275
Score = 94.7 bits (234), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 65/202 (32%), Positives = 94/202 (46%), Gaps = 29/202 (14%)
Query: 18 VFHFLLSALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQ 77
F L + + + R+I EFE FYL Y PN G N R+ WD++ ++
Sbjct: 98 TFPVLDAPDTMDQEARIITLEFEKFYLTQVYTPNAG--NGLNRLGLRQIWDEKFANYLEN 155
Query: 78 CS-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAI 136
K +I CGD NV+H+EID+ HPE N E GFT ER F +
Sbjct: 156 LDKNKAVIACGDFNVAHKEIDLKHPE------------NNHE---SAGFTDEERNGFTNL 200
Query: 137 LKEGRLIDAYRFLHKEKDMDCGFSWSGNPI--GKYRGKRMRIDYFIVSEELKDRIIACEM 194
L +G +D +R++H D++ ++W + K RIDYFIVS+ +KD+I M
Sbjct: 201 LNKG-FVDTFRYIH--GDVEGKYTWWAQRVKTSKINNSGWRIDYFIVSDRIKDKIKESNM 257
Query: 195 QGHGIELEGFYGSDHCPVSLEL 216
G DH P+ L +
Sbjct: 258 IDSGDR------QDHTPIYLSI 273
>gi|291543155|emb|CBL16265.1| exodeoxyribonuclease III [Ruminococcus bromii L2-63]
Length = 252
Score = 94.7 bits (234), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 65/192 (33%), Positives = 100/192 (52%), Gaps = 28/192 (14%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIW 85
+++ +GRVI AEF+ +++ Y PN+ + E R KW+ + ++ + KP+I
Sbjct: 85 EHDHEGRVITAEFDNCFVVTCYTPNS--QSELKRLDYRMKWEDDFKAYLKKLEEKKPVIM 142
Query: 86 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 145
CGDLNV+H+EID+ +P K + GFT ER + A+L +G ID
Sbjct: 143 CGDLNVAHKEIDLKNP---------------KTNRKNAGFTDEERSKMTALLDDG-FIDT 186
Query: 146 YRFLHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGF 204
YR+ + D + +S WS + + RIDYFIVS+ L+ + + G I E
Sbjct: 187 YRYFY--PDTEGVYSWWSYRFKAREKNAGWRIDYFIVSKALESK-----LDGAKIHTE-I 238
Query: 205 YGSDHCPVSLEL 216
GSDHCPV L +
Sbjct: 239 LGSDHCPVELTI 250
>gi|219122782|ref|XP_002181718.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217406994|gb|EEC46932.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 489
Score = 94.7 bits (234), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 67/199 (33%), Positives = 97/199 (48%), Gaps = 20/199 (10%)
Query: 21 FLLSALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS- 79
F ++ K++ +GR+++ +F +F + N Y PN+G K E S+ R +WDK F+ +
Sbjct: 304 FQMNVDKHDSEGRIVVVDFPSFTMCNVYVPNSGQKLERLSY-RTEEWDKDFLSFIQKKQK 362
Query: 80 --GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAIL 137
G P++W GDLNV+H ++V + AK Q G T ER F A L
Sbjct: 363 DRGVPVLWLGDLNVAHTNLEVWNDGAKHLAK-------------QAGVTAEERASFEAQL 409
Query: 138 KEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGH 197
G IDA+R LH + WS + K +R+DYFI L D ++
Sbjct: 410 NAG-FIDAFRRLHPTAKGHYSY-WSQRAGNREPNKGLRLDYFICDPSLFDEESKTIVRDS 467
Query: 198 GIELEGFYGSDHCPVSLEL 216
+ L GSDHCPV LEL
Sbjct: 468 YV-LPLQQGSDHCPVVLEL 485
>gi|422339748|ref|ZP_16420705.1| exodeoxyribonuclease III [Fusobacterium nucleatum subsp.
polymorphum F0401]
gi|355370591|gb|EHG17971.1| exodeoxyribonuclease III [Fusobacterium nucleatum subsp.
polymorphum F0401]
Length = 253
Score = 94.7 bits (234), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 63/196 (32%), Positives = 99/196 (50%), Gaps = 28/196 (14%)
Query: 23 LSALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGK 81
L +++ +GRVI EFE FY++ Y PN+ K+E R W+ ++++ K
Sbjct: 80 LGIEEHDKEGRVITLEFEKFYMVTVYTPNS--KDELLRLDYRMVWEDEFRKYLKNLEKKK 137
Query: 82 PLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGR 141
P++ CGDLNV+H+EID+ +P K + GFT ER +F +L G
Sbjct: 138 PVVVCGDLNVAHKEIDLKNP---------------KTNRRNAGFTDEERGKFTELLDSG- 181
Query: 142 LIDAYRFLHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIE 200
ID +R+ + +++ +S WS + RIDYF+VS+ L+ ++ E+
Sbjct: 182 FIDTFRYFY--PNLEQVYSWWSYRANARKNNAGWRIDYFVVSKGLEKNLVDAEIHSQT-- 237
Query: 201 LEGFYGSDHCPVSLEL 216
GSDHCPV L L
Sbjct: 238 ----EGSDHCPVVLFL 249
>gi|346314587|ref|ZP_08856106.1| exodeoxyribonuclease III [Erysipelotrichaceae bacterium 2_2_44A]
gi|373124043|ref|ZP_09537885.1| exodeoxyribonuclease III (xth) [Erysipelotrichaceae bacterium 21_3]
gi|422327142|ref|ZP_16408169.1| exodeoxyribonuclease III (xth) [Erysipelotrichaceae bacterium
6_1_45]
gi|345906322|gb|EGX76051.1| exodeoxyribonuclease III [Erysipelotrichaceae bacterium 2_2_44A]
gi|371659875|gb|EHO25135.1| exodeoxyribonuclease III (xth) [Erysipelotrichaceae bacterium 21_3]
gi|371663836|gb|EHO29020.1| exodeoxyribonuclease III (xth) [Erysipelotrichaceae bacterium
6_1_45]
Length = 254
Score = 94.7 bits (234), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 64/199 (32%), Positives = 103/199 (51%), Gaps = 26/199 (13%)
Query: 23 LSALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GK 81
L +++ +GRVI E+E FYL+ Y PN+ K+ R W+ + ++ + + K
Sbjct: 80 LGIEEHDHEGRVITCEYEDFYLVCVYTPNS--KDGLLRLDYRMVWEDAFRAYLHKLNETK 137
Query: 82 PLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGR 141
++ CGDLNV+H+EID+ +P K + GFT ER + +L+ G
Sbjct: 138 SVLVCGDLNVAHKEIDLKNP---------------KTNRRNAGFTDEERGKMSVLLESG- 181
Query: 142 LIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIEL 201
ID++R+L+ E++ + WS + + RIDYF+VSE+ K+ I +
Sbjct: 182 FIDSFRYLYPEQEGIYSW-WSYRFKAREKNAGWRIDYFLVSEDAKEAIREARIH------ 234
Query: 202 EGFYGSDHCPVSLELSEAS 220
YGSDHCPVSLE + +
Sbjct: 235 TDIYGSDHCPVSLEFDKKA 253
>gi|336420229|ref|ZP_08600467.1| exodeoxyribonuclease III [Fusobacterium sp. 11_3_2]
gi|336161634|gb|EGN64634.1| exodeoxyribonuclease III [Fusobacterium sp. 11_3_2]
Length = 253
Score = 94.7 bits (234), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 67/201 (33%), Positives = 103/201 (51%), Gaps = 38/201 (18%)
Query: 23 LSALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGK 81
L +++ +GRVI EFE FY++ Y PN+ K+E R W+ ++++ K
Sbjct: 80 LGIEEHDKEGRVITLEFEKFYMVTVYTPNS--KDELLRLDYRMIWEDEFRKYLKNLEKKK 137
Query: 82 PLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGR 141
P++ CGDLNV+H+EID+ +P K + GFT ER +F +L G
Sbjct: 138 PVVVCGDLNVAHKEIDLKNP---------------KTNRRNAGFTDEERGKFTELLDSG- 181
Query: 142 LIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRM------RIDYFIVSEELKDRIIACEMQ 195
ID +R+ + +++ +SW YRG+ RIDYF+VS+ L+ ++ E+
Sbjct: 182 FIDTFRYFY--PNLEQVYSWWS-----YRGRARENNAGWRIDYFVVSKGLEKNLVDAEIH 234
Query: 196 GHGIELEGFYGSDHCPVSLEL 216
IE GSDHCPV L L
Sbjct: 235 TQ-IE-----GSDHCPVVLFL 249
>gi|440793147|gb|ELR14342.1| exodeoxyribonuclease III, putative, partial [Acanthamoeba
castellanii str. Neff]
Length = 384
Score = 94.7 bits (234), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 67/228 (29%), Positives = 100/228 (43%), Gaps = 53/228 (23%)
Query: 20 HFLLSALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS 79
H + +++ +GRVI EF FYL+ +Y PN+G +E + R++W++ ++ ++L S
Sbjct: 175 HHGIGVEEHDNEGRVITLEFAGFYLVGSYIPNSG--DELKRLEYRQRWNRDMEAYLLSLS 232
Query: 80 ----------------------------GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNG 111
GKP+IWCGDLNV+HEEID+ P N
Sbjct: 233 TSGLKAGLDVHPHGHELEYRVLDESERKGKPVIWCGDLNVAHEEIDLHDPAN------NH 286
Query: 112 YVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRG 171
Y GFT ER F ++K +D+YR H+ WS + R
Sbjct: 287 YT---------SGFTDEERDDFTRVIKTMDFVDSYR--HENPTRQSYSFWSYRSAARARN 335
Query: 172 KRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELSEA 219
R+DYF+ L + ++ + GSDHCPV L L A
Sbjct: 336 MGWRLDYFLYQRALTPYVRKAFIRNFVL------GSDHCPVGLLLDPA 377
>gi|257437815|ref|ZP_05613570.1| exodeoxyribonuclease III [Faecalibacterium prausnitzii A2-165]
gi|257199738|gb|EEU98022.1| exodeoxyribonuclease III [Faecalibacterium prausnitzii A2-165]
Length = 263
Score = 94.7 bits (234), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 62/190 (32%), Positives = 95/190 (50%), Gaps = 29/190 (15%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIW 85
+++ +GRV+ E+ FYL+N Y PN+ ++ R W+ + ++L+ K P+I
Sbjct: 97 EHDHEGRVLTLEYPGFYLVNCYTPNS--QDGLKRLDYRMTWEDAFRAYLLELDAKKPVIL 154
Query: 86 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 145
CGDLNV+H EID+ + AK N GFT ER + +L G D
Sbjct: 155 CGDLNVAHTEIDIKN------AKTNRM---------SAGFTDQERAKMTELLAAG-FTDT 198
Query: 146 YRFLHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGF 204
+R +H + + +S WS + + RIDYFIVS + D++ A E+
Sbjct: 199 FRAVHPD---EVKYSWWSYRFHAREKNAGWRIDYFIVSNRIADKVTAAEIHNE------V 249
Query: 205 YGSDHCPVSL 214
+GSDHCPV L
Sbjct: 250 FGSDHCPVEL 259
>gi|416999368|ref|ZP_11939959.1| exodeoxyribonuclease III [Veillonella parvula ACS-068-V-Sch12]
gi|333976808|gb|EGL77670.1| exodeoxyribonuclease III [Veillonella parvula ACS-068-V-Sch12]
Length = 251
Score = 94.7 bits (234), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 61/189 (32%), Positives = 95/189 (50%), Gaps = 26/189 (13%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIW 85
+++ +GRVI AE++ FYL+ Y PN+ + E R W+ + ++L+ K P+I
Sbjct: 84 EHDQEGRVITAEYDNFYLVCCYTPNS--QRELARLDYRMNWEDAFRNYLLELDKKKPVIL 141
Query: 86 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 145
CGDLNV+H+EID+ +P K + GF+ ER + +L G D
Sbjct: 142 CGDLNVAHQEIDLKNP---------------KTNRKNAGFSDEERAKMTELLGAG-FTDT 185
Query: 146 YRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 205
+R L+ + + WS + R RIDYFI S+ L D+I ++ + +
Sbjct: 186 FRHLYPDAIEQYSW-WSYMGKARERNTGWRIDYFITSKRLDDKIQEAKIH------QQIF 238
Query: 206 GSDHCPVSL 214
GSDHCPV L
Sbjct: 239 GSDHCPVEL 247
>gi|325285209|ref|YP_004260999.1| exodeoxyribonuclease III Xth [Cellulophaga lytica DSM 7489]
gi|324320663|gb|ADY28128.1| exodeoxyribonuclease III Xth [Cellulophaga lytica DSM 7489]
Length = 254
Score = 94.7 bits (234), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 57/191 (29%), Positives = 99/191 (51%), Gaps = 28/191 (14%)
Query: 28 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWC 86
++ +GRV+ E+E FYL+N Y PN+G K + + R++WDK +++ KP+I C
Sbjct: 88 HDTEGRVLCTEYENFYLVNVYVPNSGQKLDR--LEYRKQWDKDFLDYLKNLEKKKPVIAC 145
Query: 87 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQ-PGFTIAERKRFGAILKEGRLIDA 145
GD NV+H+ ID+ + +K ++ + G+T E + +G +D+
Sbjct: 146 GDFNVAHKAIDLKN---------------DKSNYNKTAGYTQTEIDGMNNFIADG-FVDS 189
Query: 146 YRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 205
+R LH ++ + WS + R RIDYF+VS+ +KD++ +
Sbjct: 190 FRMLHPDEVVYT--FWSYRFKSRERNTGWRIDYFLVSQSIKDKVKEVTV------FSDIM 241
Query: 206 GSDHCPVSLEL 216
GSDHCP+ L++
Sbjct: 242 GSDHCPIGLKI 252
>gi|329768092|ref|ZP_08259601.1| exodeoxyribonuclease III [Gemella haemolysans M341]
gi|328838247|gb|EGF87859.1| exodeoxyribonuclease III [Gemella haemolysans M341]
Length = 254
Score = 94.7 bits (234), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 59/194 (30%), Positives = 99/194 (51%), Gaps = 28/194 (14%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIW 85
+++ +GRVI E++ F+ + Y PN+G E + R W++ + ++L+ + K ++
Sbjct: 84 EHDTEGRVITLEYDKFFFITVYTPNSG--SELKRLEYRMSWEEDFKNYLLELNKTKGIVV 141
Query: 86 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 145
CGDLNV+H EID+ +P K + GFT ER++F +L G ID
Sbjct: 142 CGDLNVAHTEIDLKNP---------------KSNTKNAGFTQEEREKFTKLLDAG-FIDT 185
Query: 146 YRFLHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGF 204
+R+ + D+ +S WS + RIDYF+VS +L+ + + +
Sbjct: 186 FRYYN--PDLTGAYSWWSYRFNARKNNAGWRIDYFLVSRDLEKYLESAAIHNE------I 237
Query: 205 YGSDHCPVSLELSE 218
+GSDHCPV L L +
Sbjct: 238 FGSDHCPVELVLKD 251
>gi|328956310|ref|YP_004373643.1| exodeoxyribonuclease III Xth [Coriobacterium glomerans PW2]
gi|328456634|gb|AEB07828.1| exodeoxyribonuclease III Xth [Coriobacterium glomerans PW2]
Length = 283
Score = 94.7 bits (234), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 61/194 (31%), Positives = 98/194 (50%), Gaps = 36/194 (18%)
Query: 31 DGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC---SGKPLIWCG 87
+GRV EFE F+ + Y PN+ ++ R WD+ + F+ Q KP++ CG
Sbjct: 118 EGRVCALEFERFWFADVYTPNS--QDGLARLPVRLAWDEAYRAFLKQLERMGDKPVVTCG 175
Query: 88 DLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYR 147
D NV+H EID+ +P K + G GF+ ER F +L+ G D +R
Sbjct: 176 DFNVAHNEIDLRNP---------------KSNRGNAGFSDEERASFSRLLEAG-FTDTFR 219
Query: 148 FLHKEKDMDCGFSWSGNPIGKYRGKRM----RIDYFIVSEELKDRIIACEMQGHGIELEG 203
+L+ D+ +SW ++ +R RIDYF+VS+ ++DRI+ ++ +
Sbjct: 220 YLY--PDVRDAYSWWSY---RFHARRTNAGWRIDYFLVSDSVRDRIVEATIR------QD 268
Query: 204 FYGSDHCPVSLELS 217
+GSDHCPV L ++
Sbjct: 269 VFGSDHCPVELVIA 282
>gi|269798609|ref|YP_003312509.1| exodeoxyribonuclease III Xth [Veillonella parvula DSM 2008]
gi|282849823|ref|ZP_06259207.1| exodeoxyribonuclease III [Veillonella parvula ATCC 17745]
gi|294792738|ref|ZP_06757885.1| exodeoxyribonuclease III [Veillonella sp. 6_1_27]
gi|269095238|gb|ACZ25229.1| exodeoxyribonuclease III Xth [Veillonella parvula DSM 2008]
gi|282580760|gb|EFB86159.1| exodeoxyribonuclease III [Veillonella parvula ATCC 17745]
gi|294456637|gb|EFG25000.1| exodeoxyribonuclease III [Veillonella sp. 6_1_27]
Length = 251
Score = 94.7 bits (234), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 61/189 (32%), Positives = 95/189 (50%), Gaps = 26/189 (13%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIW 85
+++ +GRVI AE++ FYL+ Y PN+ + E R W+ + ++L+ K P+I
Sbjct: 84 EHDQEGRVITAEYDNFYLVCCYTPNS--QRELARLDYRMTWEDAFRNYLLELDKKKPVIL 141
Query: 86 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 145
CGDLNV+H+EID+ +P K + GF+ ER + +L G D
Sbjct: 142 CGDLNVAHQEIDLKNP---------------KTNRKNAGFSDEERAKMTELLGAG-FTDT 185
Query: 146 YRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 205
+R L+ + + WS + R RIDYFI S+ L D+I ++ + +
Sbjct: 186 FRHLYPDAIEQYSW-WSYMGKARERNTGWRIDYFITSKRLDDKIQEAKIH------QQIF 238
Query: 206 GSDHCPVSL 214
GSDHCPV L
Sbjct: 239 GSDHCPVEL 247
>gi|156362086|ref|XP_001625612.1| predicted protein [Nematostella vectensis]
gi|156212454|gb|EDO33512.1| predicted protein [Nematostella vectensis]
Length = 257
Score = 94.7 bits (234), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 68/193 (35%), Positives = 104/193 (53%), Gaps = 30/193 (15%)
Query: 28 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWC 86
++ +GRVI AE+E F+L+ +Y PN+G + R++W+K ++ + KP+I C
Sbjct: 91 HDKEGRVITAEYEDFHLVTSYVPNSGRGLPRLGY--RQQWNKDFLSYLKKLDEIKPVILC 148
Query: 87 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 146
GDLNV+H++ID+++P K + GFT ER F +L EG D +
Sbjct: 149 GDLNVAHKDIDLANP---------------KTNTRTAGFTKEERADFTTLLGEG-FKDTF 192
Query: 147 RFLHKEKDMDCGFSWSGNPIGKYRGKRM--RIDYFIVSEELKDRIIACEMQGHGIELEGF 204
R L+ +K F WS +G R K + R+DYF+VS+ L ++ C+ I
Sbjct: 193 RELYPDKKSAYTF-WS--YMGGARAKNVGWRLDYFVVSDRLVPKV--CD----SIIRSRV 243
Query: 205 YGSDHCPVSLELS 217
GSDHCP+SL LS
Sbjct: 244 MGSDHCPLSLLLS 256
>gi|390345498|ref|XP_789515.3| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase-like
[Strongylocentrotus purpuratus]
Length = 342
Score = 94.4 bits (233), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 64/193 (33%), Positives = 110/193 (56%), Gaps = 27/193 (13%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIW 85
+++ +GR+I AE+++FY + Y PN+ K + R++WDK ++ + K P+I
Sbjct: 174 EHDKEGRLITAEYDSFYFVGVYVPNSSRKLVRLDY--RQEWDKDFHAYLKKLDAKKPVIC 231
Query: 86 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 145
CGD+NV+HEEID+ +P+ N+ PGFT ER+ F ++L G +D+
Sbjct: 232 CGDMNVAHEEIDLKNPK------------SNRNK--TPGFTDQEREGFTSLLDMG-FVDS 276
Query: 146 YRFLH-KEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGF 204
+R L+ +E D +++ GN K G R+DY ++S+ L ++ C+ Q + L+ F
Sbjct: 277 FRHLYPEEADAYSFWTYMGNCRAKNVG--WRLDYGVISKALVPKL--CDNQ---MRLQTF 329
Query: 205 YGSDHCPVSLELS 217
GSDHCP+ + L+
Sbjct: 330 -GSDHCPMVVSLA 341
>gi|282882297|ref|ZP_06290928.1| exodeoxyribonuclease III [Peptoniphilus lacrimalis 315-B]
gi|281297847|gb|EFA90312.1| exodeoxyribonuclease III [Peptoniphilus lacrimalis 315-B]
Length = 275
Score = 94.4 bits (233), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 62/191 (32%), Positives = 93/191 (48%), Gaps = 33/191 (17%)
Query: 31 DGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDL 89
+GR++ EF+ FY Y PN G + R+ WDK+ E+ + KPL+ CGD
Sbjct: 111 EGRIVTLEFKDFYFSTVYTPNAG--DGLKRLSDRQVWDKKYLEYCQELDKNKPLVLCGDF 168
Query: 90 NVSHEEIDVSHP--EFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYR 147
NV+H+EID+++P F+A GFT ER F +L EG +D +R
Sbjct: 169 NVAHKEIDLANPNNNHFSA-----------------GFTDEERTGFTNLL-EGGFVDTFR 210
Query: 148 FLHKEKDMDCGFSWSGNPI--GKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 205
++ D++ ++W I K RIDYF+VS+ +KDR+ M G
Sbjct: 211 LIN--GDVEGKYTWWAQRIKTSKINNSGWRIDYFLVSQRIKDRVKKSHMMDSGQR----- 263
Query: 206 GSDHCPVSLEL 216
DH P+ LE+
Sbjct: 264 -QDHTPIILEI 273
>gi|241888975|ref|ZP_04776279.1| exodeoxyribonuclease III [Gemella haemolysans ATCC 10379]
gi|241864224|gb|EER68602.1| exodeoxyribonuclease III [Gemella haemolysans ATCC 10379]
Length = 254
Score = 94.4 bits (233), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 59/194 (30%), Positives = 99/194 (51%), Gaps = 28/194 (14%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIW 85
+++ +GRVI E++ F+ + Y PN+G E + R W++ + ++L + K ++
Sbjct: 84 EHDTEGRVITLEYDKFFFITVYTPNSG--SELKRLEYRMSWEEDFKNYLLALNKTKGVVV 141
Query: 86 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 145
CGDLNV+H EID+ +P K + GFT ER++F +L G ID
Sbjct: 142 CGDLNVAHTEIDLKNP---------------KSNMKNAGFTPEEREKFTKLLDAG-FIDT 185
Query: 146 YRFLHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGF 204
+R+ + D+ +S WS + RIDYF+VS +L++ + + +
Sbjct: 186 FRYYN--PDLTGAYSWWSYRFNARKNNAGWRIDYFLVSRDLEEYLESAAIHNE------I 237
Query: 205 YGSDHCPVSLELSE 218
+GSDHCPV L L +
Sbjct: 238 FGSDHCPVELVLKD 251
>gi|256827574|ref|YP_003151533.1| exodeoxyribonuclease III [Cryptobacterium curtum DSM 15641]
gi|256583717|gb|ACU94851.1| exodeoxyribonuclease III [Cryptobacterium curtum DSM 15641]
Length = 262
Score = 94.4 bits (233), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 64/209 (30%), Positives = 96/209 (45%), Gaps = 43/209 (20%)
Query: 23 LSALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-- 80
L + +GR+ EF F+ ++ Y PN + E R +WD ++F C G
Sbjct: 80 LGVPHLDTEGRICALEFPEFWFVDVYTPNA--QNELARIDHRMEWDDAFRDF---CKGLE 134
Query: 81 -------------KPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTI 127
KP+I CGD NV+HEEID+ +P K + G GF+
Sbjct: 135 KGTTPLGPDTAQPKPVIMCGDFNVAHEEIDLKNP---------------KSNRGNAGFSD 179
Query: 128 AERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKD 187
ER++F +L G +D +R L+ ++ WS + RIDYF+VS+ L D
Sbjct: 180 EEREKFTKLLDAG-FVDTFRLLNP-TEVGAYSWWSYRFNARANNAGWRIDYFLVSKSLAD 237
Query: 188 RIIACEMQGHGIELEGFYGSDHCPVSLEL 216
R+ A + +GSDHCPVSL++
Sbjct: 238 RVRAARIHAD------LFGSDHCPVSLDI 260
>gi|227499267|ref|ZP_03929379.1| exodeoxyribonuclease III [Anaerococcus tetradius ATCC 35098]
gi|227218676|gb|EEI83907.1| exodeoxyribonuclease III [Anaerococcus tetradius ATCC 35098]
Length = 273
Score = 94.4 bits (233), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 60/189 (31%), Positives = 94/189 (49%), Gaps = 29/189 (15%)
Query: 31 DGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGDL 89
+GR++ E + +Y + Y PN G E N R WD + +++ + KP+I GD
Sbjct: 111 EGRILTLELDDYYFVQVYTPNAG--GELNRLPLREIWDLKFADYLEELDKIKPVIATGDF 168
Query: 90 NVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFL 149
NV+HEEID++HPE N ++ GFT ER+ F +L G D++R+L
Sbjct: 169 NVAHEEIDLAHPE-------NNHM--------SAGFTDEERRGFTNLLNRG-FTDSFRYL 212
Query: 150 HKEKDMDCGFSWSGNPI--GKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGS 207
+ KD++ ++W + K RIDYF+VS+ L D++ M G
Sbjct: 213 N--KDLEGAYTWWAQRVKTSKINNSGWRIDYFLVSDRLIDKVKDSTMIDSGQR------Q 264
Query: 208 DHCPVSLEL 216
DH P+ LE+
Sbjct: 265 DHTPIMLEI 273
>gi|268318601|ref|YP_003292257.1| exodeoxyribonuclease [Lactobacillus johnsonii FI9785]
gi|262396976|emb|CAX65990.1| exodeoxyribonuclease [Lactobacillus johnsonii FI9785]
Length = 275
Score = 94.4 bits (233), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 59/190 (31%), Positives = 94/190 (49%), Gaps = 29/190 (15%)
Query: 31 DGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDL 89
+GR++ EF+ +Y+ Y PN+G E + R+ WD++ E++ + KP+I GD
Sbjct: 111 EGRILTLEFDNYYVTQVYTPNSG--NELKRLEDRQIWDEKYTEYLQKLDKSKPVIASGDY 168
Query: 90 NVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFL 149
NV+H ID+ HPE + GFT ER+ F +LK G D +R +
Sbjct: 169 NVAHTPIDLKHPE---------------NNHHNAGFTDEERQDFDKLLKLG-FTDTFRKV 212
Query: 150 HKEKDMDCGFSWSGNPI--GKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGS 207
H +++ +SW + K RIDY+IVS+ + D++ EM G
Sbjct: 213 H--GNIEGVYSWWAQRVRTSKANNSGWRIDYYIVSDRIADQVTKSEMIDTGDR------K 264
Query: 208 DHCPVSLELS 217
DHCP+ LE++
Sbjct: 265 DHCPIMLEIN 274
>gi|227498619|ref|ZP_03928763.1| conserved hypothetical protein [Acidaminococcus sp. D21]
gi|226904075|gb|EEH89993.1| conserved hypothetical protein [Acidaminococcus sp. D21]
Length = 251
Score = 94.4 bits (233), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 63/194 (32%), Positives = 97/194 (50%), Gaps = 26/194 (13%)
Query: 23 LSALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GK 81
L +++ +GRVI AE++ FYL+N Y PN+ + E R W+ Q + S K
Sbjct: 80 LGIEEHDQEGRVITAEYDDFYLVNVYTPNS--QRELARLSYRMAWEDAFQAYCEDLSKKK 137
Query: 82 PLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGR 141
I CGD+NV+HE ID+ +P+ + GF+ ER++ A L G
Sbjct: 138 TTIVCGDMNVAHEPIDLKNPD---------------SNHHNAGFSDEERQKLDAFLARG- 181
Query: 142 LIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIEL 201
+D++R L+ +++ + WS + R RIDYF+VSE +D+I + +
Sbjct: 182 FVDSFRMLYPDREGAYTW-WSYMFKARERNAGWRIDYFLVSEAGRDKIRDVTI------M 234
Query: 202 EGFYGSDHCPVSLE 215
GSDHCPV LE
Sbjct: 235 NEIMGSDHCPVVLE 248
>gi|352683918|ref|YP_004895902.1| exodeoxyribonuclease III [Acidaminococcus intestini RyC-MR95]
gi|350278572|gb|AEQ21762.1| exodeoxyribonuclease III [Acidaminococcus intestini RyC-MR95]
Length = 258
Score = 94.4 bits (233), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 63/194 (32%), Positives = 97/194 (50%), Gaps = 26/194 (13%)
Query: 23 LSALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GK 81
L +++ +GRVI AE++ FYL+N Y PN+ + E R W+ Q + S K
Sbjct: 87 LGIEEHDQEGRVITAEYDDFYLVNVYTPNS--QRELARLSYRMAWEDAFQAYCEDLSKKK 144
Query: 82 PLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGR 141
I CGD+NV+HE ID+ +P+ + GF+ ER++ A L G
Sbjct: 145 TTIVCGDMNVAHEPIDLKNPD---------------SNHHNAGFSDEERQKLDAFLARG- 188
Query: 142 LIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIEL 201
+D++R L+ +++ + WS + R RIDYF+VSE +D+I + +
Sbjct: 189 FVDSFRMLYPDREGAYTW-WSYMFKARERNAGWRIDYFLVSEAGRDKIRDVTI------M 241
Query: 202 EGFYGSDHCPVSLE 215
GSDHCPV LE
Sbjct: 242 NEIMGSDHCPVVLE 255
>gi|158321340|ref|YP_001513847.1| exodeoxyribonuclease III Xth [Alkaliphilus oremlandii OhILAs]
gi|158141539|gb|ABW19851.1| exodeoxyribonuclease III Xth [Alkaliphilus oremlandii OhILAs]
Length = 252
Score = 94.4 bits (233), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 62/202 (30%), Positives = 103/202 (50%), Gaps = 27/202 (13%)
Query: 17 SVFHFLLSALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVL 76
SVF + + +++ +GRVI EF +Y++ Y PN+ +++ R W+ + ++
Sbjct: 76 SVF-YGIGIEEHDKEGRVITLEFGDYYMVTVYTPNS--QQKLARLDYRMTWEDCFRSYLN 132
Query: 77 QCSG-KPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGA 135
KP+I CGDLNV+H EID+ +P K + GF+ ER +F
Sbjct: 133 NLDKQKPIIVCGDLNVAHNEIDLKNP---------------KSNRKNAGFSDEERAKFTE 177
Query: 136 ILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQ 195
L G ID YR+ + +++ + WS + RIDYF VSE L+D++++ ++
Sbjct: 178 FLGNG-YIDTYRYFYPDREGAYTW-WSYMFNARANNAGWRIDYFCVSERLQDKLVSADIH 235
Query: 196 GHGIELEGFYGSDHCPVSLELS 217
H + GSDHCPV L ++
Sbjct: 236 DHIL------GSDHCPVELVIN 251
>gi|317133644|ref|YP_004092958.1| exodeoxyribonuclease III Xth [Ethanoligenens harbinense YUAN-3]
gi|315471623|gb|ADU28227.1| exodeoxyribonuclease III Xth [Ethanoligenens harbinense YUAN-3]
Length = 256
Score = 94.4 bits (233), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 62/192 (32%), Positives = 95/192 (49%), Gaps = 26/192 (13%)
Query: 31 DGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDL 89
+GRVI E E F+L+N Y PN+ + + R +W+ + ++L + KP++ CGD+
Sbjct: 88 EGRVITVESEAFFLVNVYTPNS--QRDLVRLDYRMRWEDAFRAYLLTLNRDKPVVVCGDM 145
Query: 90 NVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFL 149
NV+H EID+ +P K + GFT ER++ +L+ G ID +R L
Sbjct: 146 NVAHREIDIKNP---------------KSNIHNAGFTPEERQKMTDLLEAG-FIDTFRAL 189
Query: 150 HKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDH 209
+ E+ D WS + R RIDYF+VS+ L+ ++ + GSDH
Sbjct: 190 YPEQK-DAYTWWSYMRKARERNAGWRIDYFLVSDRLRGQVEDSTIYAD------VPGSDH 242
Query: 210 CPVSLELSEASS 221
CPV L L S
Sbjct: 243 CPVGLLLHTGGS 254
>gi|348027881|ref|YP_004870567.1| exodeoxyribonuclease III [Glaciecola nitratireducens FR1064]
gi|347945224|gb|AEP28574.1| Exodeoxyribonuclease III [Glaciecola nitratireducens FR1064]
Length = 254
Score = 94.4 bits (233), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 62/193 (32%), Positives = 99/193 (51%), Gaps = 28/193 (14%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIW 85
+++ +GRV+ AEF YL+ Y PN+G + S+ R +WD ++ + KP++
Sbjct: 87 EHDQEGRVLCAEFSDLYLVTVYTPNSGNDLKRLSY--RAQWDADFLSYIKKLEEKKPVVI 144
Query: 86 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 145
CGDLN +H +ID++ P+ PN G+T E ++ G +D
Sbjct: 145 CGDLNAAHRDIDLARPK------------PNYNK--SAGYTQQEIDGIDNLVAAG-YVDT 189
Query: 146 YRFLHKEKDMDCGFSWSGNPIG-KYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGF 204
+R++H EK +SW G + R RIDYF+VS +L+ +I E+
Sbjct: 190 FRYVHPEK---VKYSWWSYRAGARERNVGWRIDYFLVSPKLQGQIHDAEIHN------DI 240
Query: 205 YGSDHCPVSLELS 217
+GSDHCPVS++LS
Sbjct: 241 HGSDHCPVSVQLS 253
>gi|326804146|ref|YP_004321964.1| exodeoxyribonuclease III [Aerococcus urinae ACS-120-V-Col10a]
gi|326650889|gb|AEA01072.1| exodeoxyribonuclease III [Aerococcus urinae ACS-120-V-Col10a]
Length = 281
Score = 94.4 bits (233), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 62/196 (31%), Positives = 94/196 (47%), Gaps = 35/196 (17%)
Query: 29 EPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQR---RRKWDKRIQEFVLQCSG-KPLI 84
+ +GR+I +F FY Y PN G N +R R+ WD++ +++ Q KPLI
Sbjct: 109 DSEGRIITLDFGAFYFTQVYTPNAG-----NGLKRLAERQVWDEKYAQYLSQLDQEKPLI 163
Query: 85 WCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLID 144
GD NV+H+EID++HPE + GFT ER F +L +G D
Sbjct: 164 ATGDFNVAHKEIDLAHPE---------------NNHKSAGFTDEERSGFTKLLDQG-FTD 207
Query: 145 AYRFLHKEKDMDCGFSWSGNPI--GKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELE 202
+R +H D++ +SW + K RIDYF+VS+ + + + EM G
Sbjct: 208 TFRHIH--GDVEGVYSWWAQRVKTSKINNSGWRIDYFLVSDRIANAVEKSEMIDSGTR-- 263
Query: 203 GFYGSDHCPVSLELSE 218
DH P+ LE+S+
Sbjct: 264 ----QDHTPIYLEISD 275
>gi|313114917|ref|ZP_07800415.1| exodeoxyribonuclease III [Faecalibacterium cf. prausnitzii KLE1255]
gi|310622794|gb|EFQ06251.1| exodeoxyribonuclease III [Faecalibacterium cf. prausnitzii KLE1255]
Length = 250
Score = 94.4 bits (233), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 61/192 (31%), Positives = 98/192 (51%), Gaps = 29/192 (15%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIW 85
+++ +GRV+ E+ F+L+N Y PN+ ++ R +W+ + ++L K P+I
Sbjct: 84 QHDHEGRVLTLEYPGFWLVNCYTPNS--QDGLKRLDYRMEWEDAFRAYLLALDAKKPVIL 141
Query: 86 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 145
CGDLNV+H EID+ + +K + GFT ER + +L G D+
Sbjct: 142 CGDLNVAHREIDIKN---------------DKTNHMSAGFTDQERGKMTELLDAG-FADS 185
Query: 146 YRFLHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGF 204
+R LH + + +S WS + + RIDYFIVS + D+I A E+
Sbjct: 186 FRVLHPD---EVKYSWWSYRFHAREKNAGWRIDYFIVSRRIADKIRAAEIHNE------I 236
Query: 205 YGSDHCPVSLEL 216
+GSDHCPV L++
Sbjct: 237 FGSDHCPVELDI 248
>gi|294794491|ref|ZP_06759627.1| exodeoxyribonuclease III [Veillonella sp. 3_1_44]
gi|294454821|gb|EFG23194.1| exodeoxyribonuclease III [Veillonella sp. 3_1_44]
Length = 251
Score = 94.4 bits (233), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 61/189 (32%), Positives = 98/189 (51%), Gaps = 26/189 (13%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIW 85
+++ +GRVI AE++ FYL+ Y PN+ + E R W+ + ++L+ K P+I
Sbjct: 84 EHDQEGRVITAEYDNFYLVCCYTPNS--QRELARLDYRMTWEDAFRNYLLELDKKKPVIL 141
Query: 86 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 145
CGDLNV+H+EID+ +P+ N+++ GF+ ER + +L G D
Sbjct: 142 CGDLNVAHQEIDLKNPKM------------NRKN---AGFSDEERAKMTELLGAG-FTDT 185
Query: 146 YRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 205
+R L+ + + WS + R RIDYFI S+ L D+I ++ + +
Sbjct: 186 FRHLYPDAIEQYSW-WSYMGKARERNTGWRIDYFITSKRLDDKIQEAKIH------QQIF 238
Query: 206 GSDHCPVSL 214
GSDHCPV L
Sbjct: 239 GSDHCPVEL 247
>gi|385772122|ref|YP_005644688.1| exodeoxyribonuclease III Xth [Sulfolobus islandicus HVE10/4]
gi|323476236|gb|ADX81474.1| exodeoxyribonuclease III Xth [Sulfolobus islandicus HVE10/4]
Length = 247
Score = 94.4 bits (233), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 67/196 (34%), Positives = 95/196 (48%), Gaps = 29/196 (14%)
Query: 23 LSALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGK 81
L +++ +GR + E + FY++N Y P G E F + K++ I+ FVL+ K
Sbjct: 80 LQIKEFDDEGRTVTLELKDFYVINAYFPRAGDNLERLDF--KLKFNNEIENFVLKLRKAK 137
Query: 82 PLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGR 141
P+I CGD N++H+ ID + D PG T ER F L G
Sbjct: 138 PVILCGDFNIAHQNIDGAF-----------------SDPTIPGLTPQERSWFSHFLSLG- 179
Query: 142 LIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIEL 201
ID +R+LH +S+ G K G +R+DY IVSEELKDRI ++ L
Sbjct: 180 FIDTFRYLHPNVRKYSWWSYMGKAREKNLG--LRLDYCIVSEELKDRIKMADI------L 231
Query: 202 EGFYGSDHCPVSLELS 217
GSDH P+ LEL+
Sbjct: 232 IDIQGSDHAPIILELT 247
>gi|227829121|ref|YP_002830900.1| exodeoxyribonuclease III Xth [Sulfolobus islandicus L.S.2.15]
gi|229577921|ref|YP_002836319.1| exodeoxyribonuclease III Xth [Sulfolobus islandicus Y.G.57.14]
gi|238618580|ref|YP_002913405.1| exodeoxyribonuclease III Xth [Sulfolobus islandicus M.16.4]
gi|284996506|ref|YP_003418273.1| exodeoxyribonuclease III Xth [Sulfolobus islandicus L.D.8.5]
gi|227455568|gb|ACP34255.1| exodeoxyribonuclease III Xth [Sulfolobus islandicus L.S.2.15]
gi|228008635|gb|ACP44397.1| exodeoxyribonuclease III Xth [Sulfolobus islandicus Y.G.57.14]
gi|238379649|gb|ACR40737.1| exodeoxyribonuclease III Xth [Sulfolobus islandicus M.16.4]
gi|284444401|gb|ADB85903.1| exodeoxyribonuclease III Xth [Sulfolobus islandicus L.D.8.5]
Length = 247
Score = 94.4 bits (233), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 67/196 (34%), Positives = 95/196 (48%), Gaps = 29/196 (14%)
Query: 23 LSALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGK 81
L +++ +GR + E + FY++N Y P G E F + K++ I+ FVL+ K
Sbjct: 80 LQIKEFDDEGRTVTLELKDFYVINAYFPRAGDNLERLDF--KLKFNNEIENFVLKLRKAK 137
Query: 82 PLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGR 141
P+I CGD N++H+ ID + D PG T ER F L G
Sbjct: 138 PVILCGDFNIAHQNIDGAF-----------------SDPTIPGLTPQERSWFSHFLSLG- 179
Query: 142 LIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIEL 201
ID +R+LH +S+ G K G +R+DY IVSEELKDRI ++ L
Sbjct: 180 FIDTFRYLHPNVRKYSWWSYMGKAREKNLG--LRLDYCIVSEELKDRIKMADI------L 231
Query: 202 EGFYGSDHCPVSLELS 217
GSDH P+ LEL+
Sbjct: 232 IDIQGSDHAPIILELT 247
>gi|227826512|ref|YP_002828291.1| exodeoxyribonuclease III Xth [Sulfolobus islandicus M.14.25]
gi|229583674|ref|YP_002842175.1| exodeoxyribonuclease III Xth [Sulfolobus islandicus M.16.27]
gi|227458307|gb|ACP36993.1| exodeoxyribonuclease III Xth [Sulfolobus islandicus M.14.25]
gi|228018723|gb|ACP54130.1| exodeoxyribonuclease III Xth [Sulfolobus islandicus M.16.27]
Length = 247
Score = 94.4 bits (233), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 67/196 (34%), Positives = 95/196 (48%), Gaps = 29/196 (14%)
Query: 23 LSALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGK 81
L +++ +GR + E + FY++N Y P G E F + K++ I+ FVL+ K
Sbjct: 80 LQIKEFDDEGRTVTLELKDFYVINAYFPRAGDNLERLDF--KLKFNNEIENFVLKLRKAK 137
Query: 82 PLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGR 141
P+I CGD N++H+ ID + D PG T ER F L G
Sbjct: 138 PVILCGDFNIAHQNIDGAF-----------------SDPTIPGLTPQERSWFSHFLSLG- 179
Query: 142 LIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIEL 201
ID +R+LH +S+ G K G +R+DY IVSEELKDRI ++ L
Sbjct: 180 FIDTFRYLHPNVRKYSWWSYMGKAREKNLG--LRLDYCIVSEELKDRIKMADI------L 231
Query: 202 EGFYGSDHCPVSLELS 217
GSDH P+ LEL+
Sbjct: 232 IDIQGSDHAPIILELT 247
>gi|182413315|ref|YP_001818381.1| exodeoxyribonuclease III Xth [Opitutus terrae PB90-1]
gi|177840529|gb|ACB74781.1| exodeoxyribonuclease III Xth [Opitutus terrae PB90-1]
Length = 253
Score = 94.4 bits (233), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 66/191 (34%), Positives = 94/191 (49%), Gaps = 27/191 (14%)
Query: 28 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFV--LQCSGKPLIW 85
++ +GRVI AEF F+L+N Y PN+ + R +WD F+ L+ GKP+++
Sbjct: 87 HDDEGRVITAEFADFFLVNVYQPNSQRGLTRLKY-RTEEWDPAFLAFLKKLEKKGKPVVF 145
Query: 86 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 145
CGDLNV+H+EID+++P K + GFT ER F +L G +D
Sbjct: 146 CGDLNVAHQEIDLTNP---------------KTNRRNAGFTDEERANFSKLLASG-FVDT 189
Query: 146 YRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 205
+R EK WS + R R+DYF+ SE+LK + +
Sbjct: 190 FREF--EKGPGHYTWWSQMMNCRARNIGWRVDYFVASEKLKPALKRAWISPE------VM 241
Query: 206 GSDHCPVSLEL 216
GSDHCPV LEL
Sbjct: 242 GSDHCPVGLEL 252
>gi|451344782|ref|YP_007443413.1| exodeoxyribonuclease III [Bacillus amyloliquefaciens IT-45]
gi|449848540|gb|AGF25532.1| exodeoxyribonuclease III [Bacillus amyloliquefaciens IT-45]
Length = 252
Score = 94.0 bits (232), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 63/191 (32%), Positives = 96/191 (50%), Gaps = 28/191 (14%)
Query: 28 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 86
++ +GRVI EFE +++N Y PN K R +W+ +E++ + KP+I C
Sbjct: 86 HDQEGRVITLEFENLFVVNCYTPNA--KRGLERIDYRLQWEADFKEYLQKLDRKKPVILC 143
Query: 87 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 146
GDLNV+H EID+ +P K + GF+ ER+ F A+L G D++
Sbjct: 144 GDLNVAHREIDLKNP---------------KANRKNAGFSDQEREAFSALLNTG-FTDSF 187
Query: 147 RFLHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 205
R+L+ D + G+S WS + + R+DY IVS+ LK RI +
Sbjct: 188 RYLY--PDREGGYSWWSYRTNAREKNIGWRLDYVIVSDRLKPRISEAAI------CADIM 239
Query: 206 GSDHCPVSLEL 216
GSDHCPV + +
Sbjct: 240 GSDHCPVEMTV 250
>gi|419859227|ref|ZP_14381882.1| exonuclease III [Oenococcus oeni DSM 20252 = AWRIB129]
gi|410496776|gb|EKP88255.1| exonuclease III [Oenococcus oeni DSM 20252 = AWRIB129]
Length = 273
Score = 94.0 bits (232), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 60/189 (31%), Positives = 93/189 (49%), Gaps = 30/189 (15%)
Query: 31 DGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDL 89
+GR++ E+ FYLLN Y PN+G + R KWD + + ++ S K +I+ GDL
Sbjct: 110 EGRIVTLEYPDFYLLNVYTPNSG--DGLRRLPARGKWDDQFRHYISDLSERKIVIFSGDL 167
Query: 90 NVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFL 149
NV+HEEID+ + + + GFT ER++F +L G ID +R
Sbjct: 168 NVAHEEIDLKN---------------SSSNHNSAGFTDQEREKFSRLLSAG-FIDTWRLQ 211
Query: 150 HKEKDMDCGFSW--SGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGS 207
H + + +SW N + K RIDY+IVS K++I+ M G +
Sbjct: 212 HPK---EIAYSWWSQRNQLAKTNNAGWRIDYYIVSNSAKEKIVKTGMIDTGTR------A 262
Query: 208 DHCPVSLEL 216
DH P+ L++
Sbjct: 263 DHAPIYLQM 271
>gi|354806768|ref|ZP_09040248.1| exodeoxyribonuclease III [Lactobacillus curvatus CRL 705]
gi|354514743|gb|EHE86710.1| exodeoxyribonuclease III [Lactobacillus curvatus CRL 705]
Length = 254
Score = 94.0 bits (232), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 57/193 (29%), Positives = 97/193 (50%), Gaps = 26/193 (13%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIW 85
+++ +GRVI E+ TFYL+ Y PN+ +++ R +W+ Q ++ S KP+I+
Sbjct: 84 EHDQEGRVITLEYPTFYLITCYTPNS--QDKLKRLDYRMRWENAFQTYIADLSTQKPVIF 141
Query: 86 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 145
CGDLNV+HE ID+ + +K + GF+ ER + +L G D
Sbjct: 142 CGDLNVAHEPIDLKN---------------DKTNHHNAGFSDEERGQMTTLLNRG-FTDT 185
Query: 146 YRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 205
+R+ + ++ D WS + RIDYFI S +L+ +++ ++ +
Sbjct: 186 FRYFYPDQP-DIYSWWSYRFHARDNNAGWRIDYFITSNDLQPKLVDAKIHTE------IF 238
Query: 206 GSDHCPVSLELSE 218
GSDHCPV L+ +
Sbjct: 239 GSDHCPVELDTQD 251
>gi|237733965|ref|ZP_04564446.1| conserved hypothetical protein [Mollicutes bacterium D7]
gi|229383046|gb|EEO33137.1| conserved hypothetical protein [Coprobacillus sp. D7]
Length = 251
Score = 94.0 bits (232), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 63/191 (32%), Positives = 96/191 (50%), Gaps = 26/191 (13%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIW 85
+++ +GRV+ E+E FYL+N Y PN+ + E R W++ ++ KP+I
Sbjct: 84 EHDHEGRVVTLEYEKFYLVNCYTPNS--QNELKRLDYRMHWEEDFLAYLKSLEKSKPVIL 141
Query: 86 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 145
CGDLNV+H+EID+ +P K + GF+ ER + +L+ G ID
Sbjct: 142 CGDLNVAHQEIDLKNP---------------KTNRKNAGFSDEERAKMTNLLENG-FIDT 185
Query: 146 YRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 205
YR+L+ +++ + WS + RIDYFIVS+ LK+ I
Sbjct: 186 YRYLYPDQEGVYSW-WSYRFNARKNNAGWRIDYFIVSDCLKEGI------KEAFICTDIL 238
Query: 206 GSDHCPVSLEL 216
GSDHCPV LE+
Sbjct: 239 GSDHCPVGLEI 249
>gi|403071080|ref|ZP_10912412.1| exodeoxyribonuclease [Oceanobacillus sp. Ndiop]
Length = 253
Score = 94.0 bits (232), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 61/191 (31%), Positives = 99/191 (51%), Gaps = 26/191 (13%)
Query: 29 EPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCG 87
+ +GR+I EF F+L+N Y PN+ K + R +W+ + ++ + KP+I+CG
Sbjct: 86 QEEGRIITLEFNEFFLVNVYTPNS--KRDLTRLDYRLEWEDELYSYLRELDEEKPVIYCG 143
Query: 88 DLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYR 147
DLNV+H+EID+ + +K + G GFT ER + +L G +D R
Sbjct: 144 DLNVAHQEIDLKN---------------HKTNHGNSGFTAQERGKMTRLLDSG-FVDTLR 187
Query: 148 FLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGS 207
H +K+ + WS + R RIDYFIVS+ L + ++ H + + GS
Sbjct: 188 HFHPDKEGIYSW-WSYMKTIRERNIGWRIDYFIVSKRLVPYLKNSDV--HSLVM----GS 240
Query: 208 DHCPVSLELSE 218
DHCPV+L++ +
Sbjct: 241 DHCPVALDMDD 251
>gi|257783920|ref|YP_003179137.1| exodeoxyribonuclease III Xth [Atopobium parvulum DSM 20469]
gi|257472427|gb|ACV50546.1| exodeoxyribonuclease III Xth [Atopobium parvulum DSM 20469]
Length = 259
Score = 94.0 bits (232), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 60/188 (31%), Positives = 97/188 (51%), Gaps = 28/188 (14%)
Query: 31 DGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGDL 89
+GRV EFE F+ + Y PN+ K++ R +WD+ ++F+ + S KP+I CGD
Sbjct: 96 EGRVCALEFEKFWFVCVYTPNS--KDQLARLDERLEWDQHYRDFLAELSKQKPVITCGDF 153
Query: 90 NVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFL 149
NV+H EID+ +P N+++ GF+ ER+ F +L G D +R+
Sbjct: 154 NVAHNEIDLKNPS------------SNRQN---AGFSDEERESFTKLLDAG-FTDTFRYR 197
Query: 150 HKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSD 208
H D+ +S WS + RIDYF+VS+ + +++ + + L YGSD
Sbjct: 198 H--PDITGAYSWWSYRFNARKNNAGWRIDYFLVSDRIAEQVKSASI------LSEIYGSD 249
Query: 209 HCPVSLEL 216
HCP+ L +
Sbjct: 250 HCPIELSI 257
>gi|159113893|ref|XP_001707172.1| Endonuclease/Exonuclease/phosphatase [Giardia lamblia ATCC 50803]
gi|157435275|gb|EDO79498.1| Endonuclease/Exonuclease/phosphatase [Giardia lamblia ATCC 50803]
Length = 322
Score = 94.0 bits (232), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 61/205 (29%), Positives = 104/205 (50%), Gaps = 39/205 (19%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNG---------WKEEENSFQRRRKWDKRIQEFV-- 75
+++ +GR + +F L++ YAPN+G K + R K++K I +++
Sbjct: 141 EFDSEGRFLHVSLPSFELIHVYAPNSGRGSSGKAFTSKNRPANLSTRIKYEKLISKYIGN 200
Query: 76 LQCSGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGA 135
L +GK +++CGDLNV+H EID+ +P K + PGFT ER F
Sbjct: 201 LVAAGKDVVYCGDLNVAHNEIDLYNP---------------KSNHFSPGFTDEERNAFSK 245
Query: 136 ILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRM--RIDYFIVSEELKDRIIACE 193
+L LIDA+R +H + +SW N G+ R ++ RIDYF+V+ ++ R+ +
Sbjct: 246 LLDGHGLIDAFRAMHPHR---INYSWFSN-FGRAREQKHGWRIDYFVVTSKIFKRVTTVD 301
Query: 194 MQGHGIELEGFYG-SDHCPVSLELS 217
+ L+ + SDH P+ + L+
Sbjct: 302 I------LDDYNSYSDHVPIIMTLT 320
>gi|385774841|ref|YP_005647409.1| exodeoxyribonuclease III Xth [Sulfolobus islandicus REY15A]
gi|323473589|gb|ADX84195.1| exodeoxyribonuclease III Xth [Sulfolobus islandicus REY15A]
Length = 247
Score = 94.0 bits (232), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 67/196 (34%), Positives = 95/196 (48%), Gaps = 29/196 (14%)
Query: 23 LSALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GK 81
L +++ +GR + E + FY++N Y P G E F + K++ I+ FVL+ K
Sbjct: 80 LQIKEFDDEGRTVTLELKDFYVINAYFPRAGDNLERLDF--KLKFNNEIENFVLKLRRAK 137
Query: 82 PLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGR 141
P+I CGD N++H+ ID + D PG T ER F L G
Sbjct: 138 PVILCGDFNIAHQNIDGAF-----------------SDPTIPGLTPQERSWFSHFLSLG- 179
Query: 142 LIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIEL 201
ID +R+LH +S+ G K G +R+DY IVSEELKDRI ++ L
Sbjct: 180 FIDTFRYLHPNVRKYSWWSYMGKAREKNLG--LRLDYCIVSEELKDRIKMADI------L 231
Query: 202 EGFYGSDHCPVSLELS 217
GSDH P+ LEL+
Sbjct: 232 IDIQGSDHAPIILELT 247
>gi|17136678|ref|NP_476841.1| recombination repair protein 1, isoform A [Drosophila melanogaster]
gi|150421656|sp|P27864.2|RRP1_DROME RecName: Full=Recombination repair protein 1; AltName:
Full=DNA-(apurinic or apyrimidinic site) lyase
gi|7295875|gb|AAF51175.1| recombination repair protein 1, isoform A [Drosophila melanogaster]
gi|21428628|gb|AAM49974.1| LP05366p [Drosophila melanogaster]
Length = 679
Score = 94.0 bits (232), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 59/184 (32%), Positives = 95/184 (51%), Gaps = 26/184 (14%)
Query: 32 GRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGDLN 90
GR+I AE+E FYL+N Y PN+G K + + R +W+K Q +V + KP++ CGD+N
Sbjct: 517 GRMITAEYEKFYLINVYVPNSGRK--LVNLEPRMRWEKLFQAYVKKLDALKPVVICGDMN 574
Query: 91 VSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLH 150
VSH ID+ +P K + GFT ER + +L G +D +R L+
Sbjct: 575 VSHMPIDLENP---------------KNNTKNAGFTQEERDKMTELLGLG-FVDTFRHLY 618
Query: 151 KEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHC 210
++ F W+ + R R+DY +VSE +++ E++ + GSDHC
Sbjct: 619 PDRKGAYTF-WTYMANARARNVGWRLDYCLVSERFVPKVVEHEIRSQCL------GSDHC 671
Query: 211 PVSL 214
P+++
Sbjct: 672 PITI 675
>gi|158340|gb|AAA62769.1| recombination repair protein [Drosophila melanogaster]
gi|3342457|gb|AAC27621.1| recombination repair protein 1 [Drosophila melanogaster]
Length = 679
Score = 94.0 bits (232), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 59/184 (32%), Positives = 95/184 (51%), Gaps = 26/184 (14%)
Query: 32 GRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGDLN 90
GR+I AE+E FYL+N Y PN+G K + + R +W+K Q +V + KP++ CGD+N
Sbjct: 517 GRMITAEYEKFYLINVYVPNSGRK--LVNLEPRMRWEKLFQAYVKKLDALKPVVICGDMN 574
Query: 91 VSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLH 150
VSH ID+ +P K + GFT ER + +L G +D +R L+
Sbjct: 575 VSHMPIDLENP---------------KNNTKNAGFTQEERDKMTELLGLG-FVDTFRHLY 618
Query: 151 KEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHC 210
++ F W+ + R R+DY +VSE +++ E++ + GSDHC
Sbjct: 619 PDRKGAYTF-WTYMANARARNVGWRLDYCLVSERFVPKVVEHEIRSQCL------GSDHC 671
Query: 211 PVSL 214
P+++
Sbjct: 672 PITI 675
>gi|253826925|ref|ZP_04869810.1| exodeoxyribonuclease LexA [Helicobacter canadensis MIT 98-5491]
gi|313142047|ref|ZP_07804240.1| exodeoxyribonuclease LexA [Helicobacter canadensis MIT 98-5491]
gi|253510331|gb|EES88990.1| exodeoxyribonuclease LexA [Helicobacter canadensis MIT 98-5491]
gi|313131078|gb|EFR48695.1| exodeoxyribonuclease LexA [Helicobacter canadensis MIT 98-5491]
Length = 252
Score = 94.0 bits (232), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 62/193 (32%), Positives = 100/193 (51%), Gaps = 30/193 (15%)
Query: 28 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWC 86
++ +GR+I AE++ FYL+N Y PN+ K E R +W+ + ++ KP+I C
Sbjct: 85 HDKEGRIICAEYKDFYLVNVYTPNS--KRELERLSYRMEWEDDFRAYLKNLEKTKPVIVC 142
Query: 87 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 146
GDLNV+H+EID+ +P K + GFT ER++ +L G D +
Sbjct: 143 GDLNVAHQEIDLKNP---------------KTNRRNAGFTDEEREKMTQLLDSG-FTDTF 186
Query: 147 RFLHKEKDMDCGFSWSGNPIGKYRGKRM--RIDYFIVSEELKDRIIACEMQGHGIELEGF 204
R H ++ +SW + +GK R RIDYF+ S+ L +++ ++
Sbjct: 187 R--HFYPTLEGAYSW-WSYMGKARENNTGWRIDYFLCSKALDSKLLDAKIYPE------V 237
Query: 205 YGSDHCPVSLELS 217
+GSDHCPV LE++
Sbjct: 238 FGSDHCPVGLEIN 250
>gi|384247332|gb|EIE20819.1| hypothetical protein COCSUDRAFT_18358, partial [Coccomyxa
subellipsoidea C-169]
Length = 246
Score = 94.0 bits (232), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 65/191 (34%), Positives = 93/191 (48%), Gaps = 27/191 (14%)
Query: 28 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWC 86
++ +GRVI AE+ +FY++N Y PN+G + + R WD +++ KP+I
Sbjct: 75 HDQEGRVITAEYPSFYVVNVYVPNSGEGLKRLEY-RVGSWDVAFADYLAGLGAKKPVILT 133
Query: 87 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 146
GDLN +H+EID+ P K + GFT ERK F A L + D +
Sbjct: 134 GDLNCAHQEIDIHDP---------------KRNLKSAGFTEEERKSFSAQLLQRGFKDTF 178
Query: 147 RFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGI-ELEGFY 205
R K D+ W+ + R + R+DYF+VSE L +R+ H I L
Sbjct: 179 R--EKYPDVVGYTYWNYRTGARVRNRGWRLDYFLVSEALAERV-------HDIFHLPDVQ 229
Query: 206 GSDHCPVSLEL 216
GSDHCPV L L
Sbjct: 230 GSDHCPVGLVL 240
>gi|224024813|ref|ZP_03643179.1| hypothetical protein BACCOPRO_01544 [Bacteroides coprophilus DSM
18228]
gi|224018043|gb|EEF76047.1| hypothetical protein BACCOPRO_01544 [Bacteroides coprophilus DSM
18228]
Length = 251
Score = 94.0 bits (232), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 58/191 (30%), Positives = 99/191 (51%), Gaps = 26/191 (13%)
Query: 28 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIWC 86
++ +GRVI E + FYL+ Y PN+ ++ R W+ + ++L+ K P++ C
Sbjct: 85 HDHEGRVITLEMDNFYLVTVYTPNS--QDGLKRLDYRMTWEDDFRNYLLELDKKKPVLVC 142
Query: 87 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 146
GDLNV+H+EID+ +P+ ++N GFT ER++F +L G ID +
Sbjct: 143 GDLNVAHKEIDLKNPK---TNRMNA------------GFTDQEREKFQILLDAG-FIDTF 186
Query: 147 RFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYG 206
R+ + E+ + WS + + RIDYF+ S L D++ + ++ +G
Sbjct: 187 RYFYPEQTGIYSW-WSYRFKAREKNAGWRIDYFLASRRLADKLESAKIHTE------IFG 239
Query: 207 SDHCPVSLELS 217
SDHCPV + L+
Sbjct: 240 SDHCPVEVTLN 250
>gi|317056539|ref|YP_004105006.1| exodeoxyribonuclease III Xth [Ruminococcus albus 7]
gi|315448808|gb|ADU22372.1| exodeoxyribonuclease III Xth [Ruminococcus albus 7]
Length = 250
Score = 94.0 bits (232), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 62/187 (33%), Positives = 95/187 (50%), Gaps = 26/187 (13%)
Query: 31 DGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDL 89
+GRVI EFE +Y + Y PN + E R +++ ++ ++ Q KP+++CGDL
Sbjct: 87 EGRVITCEFEDYYFVCCYVPNA--QNELKRIDYRMEFEDDMRAYLSQLDKTKPVVYCGDL 144
Query: 90 NVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFL 149
NV+HEEID+ +P K + G GF+ ER +F +L G D +R L
Sbjct: 145 NVAHEEIDLKNP---------------KSNAGNAGFSDEERGKFTELLGAG-FADTFRRL 188
Query: 150 HKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDH 209
+ +K + WS + RIDYF+VSE L D++ ++ L GSDH
Sbjct: 189 YPDKAGAYSW-WSYRFNARKNNAGWRIDYFVVSERLMDKVKDSKI------LSDITGSDH 241
Query: 210 CPVSLEL 216
CPV L++
Sbjct: 242 CPVELDI 248
>gi|421882518|ref|ZP_16313789.1| Exodeoxyribonuclease III [Helicobacter bizzozeronii CCUG 35545]
gi|375315363|emb|CCF81785.1| Exodeoxyribonuclease III [Helicobacter bizzozeronii CCUG 35545]
Length = 250
Score = 94.0 bits (232), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 61/195 (31%), Positives = 98/195 (50%), Gaps = 26/195 (13%)
Query: 23 LSALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-K 81
+ +++ +GRV+ E+ FYL+N Y PN+ + R KW++ ++F+ G K
Sbjct: 80 IGVAQHDLEGRVVTCEYANFYLVNVYVPNS--QRGLLRLDYRLKWEEAFRQFLADLMGHK 137
Query: 82 PLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGR 141
++ CGDLNV+H+EID+ +PE + GF+ ER F +L G
Sbjct: 138 AVVVCGDLNVAHKEIDLKNPE---------------SNHHNAGFSPEERHAFSQLLDLG- 181
Query: 142 LIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIEL 201
LID YR + + + WS + R RIDYF+VS L++++ + H +
Sbjct: 182 LIDTYRHFYPNQQGIYTW-WSYMNEARARNIGWRIDYFLVSHTLQEQLKDALIHPHIL-- 238
Query: 202 EGFYGSDHCPVSLEL 216
GSDHCPV L++
Sbjct: 239 ----GSDHCPVGLKI 249
>gi|432942682|ref|XP_004083031.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase-like isoform 2
[Oryzias latipes]
Length = 298
Score = 93.6 bits (231), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 61/192 (31%), Positives = 100/192 (52%), Gaps = 26/192 (13%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIW 85
+++ +GRVI AEF TF+L+ Y PN R+ WD Q ++ + KPL+
Sbjct: 131 EHDKEGRVITAEFPTFFLVTAYVPNAS--RGLVRLDYRKTWDVDFQAYLTELDVQKPLVL 188
Query: 86 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 145
CGDLNV+H+EID+ +P+ NK++ GFT ER+ F +L G +D+
Sbjct: 189 CGDLNVAHQEIDLKNPKG------------NKKN---AGFTPEEREGFSQLLAAG-FVDS 232
Query: 146 YRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 205
+R L+ E+ F W+ + + R+DYF++S L + +++ +
Sbjct: 233 FRELYPEQANAYTF-WTYMMNSRAKNVGWRLDYFLLSSSLVPGLCDSKIRNKAM------ 285
Query: 206 GSDHCPVSLELS 217
GSDHCP++L L+
Sbjct: 286 GSDHCPITLHLA 297
>gi|432942680|ref|XP_004083030.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase-like isoform 1
[Oryzias latipes]
Length = 311
Score = 93.6 bits (231), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 61/192 (31%), Positives = 100/192 (52%), Gaps = 26/192 (13%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIW 85
+++ +GRVI AEF TF+L+ Y PN R+ WD Q ++ + KPL+
Sbjct: 144 EHDKEGRVITAEFPTFFLVTAYVPNAS--RGLVRLDYRKTWDVDFQAYLTELDVQKPLVL 201
Query: 86 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 145
CGDLNV+H+EID+ +P+ NK++ GFT ER+ F +L G +D+
Sbjct: 202 CGDLNVAHQEIDLKNPKG------------NKKN---AGFTPEEREGFSQLLAAG-FVDS 245
Query: 146 YRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 205
+R L+ E+ F W+ + + R+DYF++S L + +++ +
Sbjct: 246 FRELYPEQANAYTF-WTYMMNSRAKNVGWRLDYFLLSSSLVPGLCDSKIRNKAM------ 298
Query: 206 GSDHCPVSLELS 217
GSDHCP++L L+
Sbjct: 299 GSDHCPITLHLA 310
>gi|427393372|ref|ZP_18887150.1| exodeoxyribonuclease III (xth) [Alloiococcus otitis ATCC 51267]
gi|425730590|gb|EKU93424.1| exodeoxyribonuclease III (xth) [Alloiococcus otitis ATCC 51267]
Length = 275
Score = 93.6 bits (231), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 60/192 (31%), Positives = 92/192 (47%), Gaps = 29/192 (15%)
Query: 29 EPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWCG 87
+ +GR+I EF+ FY Y PN G + R++WDK+ ++ + KP+I G
Sbjct: 109 DSEGRMITLEFDNFYFTQVYTPNAG--SQLARLGERQEWDKQYANYLTSLDAAKPVIAAG 166
Query: 88 DLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYR 147
D NV+H+EID++HPE + GFT ER+ F +L G D++R
Sbjct: 167 DFNVAHQEIDLAHPE---------------NNHHSAGFTDEEREGFSHLLSRG-FTDSFR 210
Query: 148 FLHKEKDMDCGFSWSGNPI--GKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 205
H D++ +SW + K RIDYF+ S+ L D++ EM G
Sbjct: 211 --HVNGDVEGVYSWWAQRVKTSKENNSGWRIDYFLTSDRLSDQVEKSEMVDSGPR----- 263
Query: 206 GSDHCPVSLELS 217
DH P+ LE++
Sbjct: 264 -QDHTPIYLEIN 274
>gi|317501545|ref|ZP_07959741.1| exodeoxyribonuclease III Xth [Lachnospiraceae bacterium 8_1_57FAA]
gi|331088593|ref|ZP_08337504.1| exodeoxyribonuclease [Lachnospiraceae bacterium 3_1_46FAA]
gi|336440482|ref|ZP_08620069.1| exodeoxyribonuclease [Lachnospiraceae bacterium 1_1_57FAA]
gi|316897056|gb|EFV19131.1| exodeoxyribonuclease III Xth [Lachnospiraceae bacterium 8_1_57FAA]
gi|330407550|gb|EGG87050.1| exodeoxyribonuclease [Lachnospiraceae bacterium 3_1_46FAA]
gi|336012927|gb|EGN42818.1| exodeoxyribonuclease [Lachnospiraceae bacterium 1_1_57FAA]
Length = 250
Score = 93.6 bits (231), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 60/191 (31%), Positives = 98/191 (51%), Gaps = 26/191 (13%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIW 85
+++ +GRVI EFE FY + Y PN+ + E R +W+ + ++ + KP+I
Sbjct: 84 EHDQEGRVITCEFEDFYFVTVYTPNS--QNELARLDYRMRWEDDFRMYLKKLEEKKPVIV 141
Query: 86 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 145
GD+NV+H+EID+ +P K + GFT ER +F +L G ID
Sbjct: 142 TGDMNVAHKEIDLKNP---------------KTNRKNAGFTDEERGKFTELLDAG-FIDT 185
Query: 146 YRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 205
+R+ + +++ + WS + + RIDYF VSE LK+R+ ++ L
Sbjct: 186 FRYFYPDREGIYSW-WSYRFSARAKNAGWRIDYFCVSESLKERLKDAKI------LTDVM 238
Query: 206 GSDHCPVSLEL 216
GSDHCP+ L++
Sbjct: 239 GSDHCPIELDM 249
>gi|153815015|ref|ZP_01967683.1| hypothetical protein RUMTOR_01232 [Ruminococcus torques ATCC 27756]
gi|145847583|gb|EDK24501.1| exodeoxyribonuclease III [Ruminococcus torques ATCC 27756]
Length = 252
Score = 93.6 bits (231), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 60/191 (31%), Positives = 98/191 (51%), Gaps = 26/191 (13%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIW 85
+++ +GRVI EFE FY + Y PN+ + E R +W+ + ++ + KP+I
Sbjct: 86 EHDQEGRVITCEFEDFYFVTVYTPNS--QNELARLDYRMRWEDDFRMYLKKLEEKKPVIV 143
Query: 86 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 145
GD+NV+H+EID+ +P K + GFT ER +F +L G ID
Sbjct: 144 TGDMNVAHKEIDLKNP---------------KTNRKNAGFTDEERGKFTELLDAG-FIDT 187
Query: 146 YRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 205
+R+ + +++ + WS + + RIDYF VSE LK+R+ ++ L
Sbjct: 188 FRYFYPDREGIYSW-WSYRFSARAKNAGWRIDYFCVSESLKERLKDAKI------LTDVM 240
Query: 206 GSDHCPVSLEL 216
GSDHCP+ L++
Sbjct: 241 GSDHCPIELDM 251
>gi|47213945|emb|CAF94476.1| unnamed protein product [Tetraodon nigroviridis]
Length = 320
Score = 93.6 bits (231), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 62/208 (29%), Positives = 107/208 (51%), Gaps = 27/208 (12%)
Query: 12 LCNNSSV-FHFLLSALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKR 70
LC V + + +++ +GRVI AEF F+L+ Y PN+G R+ WD
Sbjct: 137 LCKTEPVKVTYGIGKEEHDKEGRVITAEFPGFFLVTAYVPNSG--RGLVRLDYRKTWDAD 194
Query: 71 IQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAE 129
+ ++ + KP++ CGDLNV+H+EID+ +P+ NK++ GFT E
Sbjct: 195 FRTYLSELDVQKPVVLCGDLNVAHQEIDLKNPKG------------NKKN---AGFTAEE 239
Query: 130 RKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRI 189
R+ FG +L+ G +D++R L+ E+ F W+ + + R+DYF++S L +
Sbjct: 240 REGFGQLLEAG-FVDSFRELYPEQSHAYSF-WTYMMNARDKNVGWRLDYFVLSSSLLPGL 297
Query: 190 IACEMQGHGIELEGFYGSDHCPVSLELS 217
+++ GSDHCP++L ++
Sbjct: 298 CDSKIRNQ------VKGSDHCPITLHMA 319
>gi|116491630|ref|YP_811174.1| exonuclease III [Oenococcus oeni PSU-1]
gi|116092355|gb|ABJ57509.1| Exonuclease III [Oenococcus oeni PSU-1]
Length = 273
Score = 93.6 bits (231), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 60/189 (31%), Positives = 93/189 (49%), Gaps = 30/189 (15%)
Query: 31 DGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDL 89
+GR++ E+ FYLLN Y PN+G + R KWD + + ++ S K +I+ GDL
Sbjct: 110 EGRIVTLEYPDFYLLNVYTPNSG--DGLRRLPARGKWDDQFRHYISDLSERKIVIFSGDL 167
Query: 90 NVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFL 149
NV+HEEID+ + + + GFT ER++F +L G ID +R
Sbjct: 168 NVAHEEIDLKN---------------SSSNHNSAGFTDQEREKFSRLLSAG-FIDTWRLQ 211
Query: 150 HKEKDMDCGFSW--SGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGS 207
H + + +SW N + K RIDY+IVS K++I+ M G +
Sbjct: 212 HPK---EIAYSWWSQRNRLAKTNNAGWRIDYYIVSNSAKEKIVKTGMIDTGTR------A 262
Query: 208 DHCPVSLEL 216
DH P+ L++
Sbjct: 263 DHAPIYLQM 271
>gi|346986376|ref|NP_001231340.1| DNA-(apurinic or apyrimidinic site) lyase [Cricetulus griseus]
gi|4106095|gb|AAD02702.1| apurinic/apyrimidinic endonuclease [Cricetulus griseus]
gi|344257035|gb|EGW13139.1| DNA-(apurinic or apyrimidinic site) lyase [Cricetulus griseus]
Length = 317
Score = 93.6 bits (231), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 64/191 (33%), Positives = 103/191 (53%), Gaps = 25/191 (13%)
Query: 28 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQ-CSGKPLIWC 86
++ +GRVI+AEF++F L+ Y PN G + R++WDK +F+ S KPL+ C
Sbjct: 150 HDQEGRVIVAEFDSFVLVTAYVPNAG--RGLVRLEYRQRWDKAFCKFLKDLASRKPLVLC 207
Query: 87 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 146
GDLNV+HEEID+ +P+ NK++ GFT ER+ FG +L+ L D++
Sbjct: 208 GDLNVAHEEIDLRNPKG------------NKKN---AGFTPQERQGFGELLQAVPLTDSF 252
Query: 147 RFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYG 206
R L+ F W+ + + R+DYF++S L + +++ + G
Sbjct: 253 RHLYPNTPYAYTF-WTYMMNARAKNVGWRLDYFLLSHSLLSSLCDSKIRSKAL------G 305
Query: 207 SDHCPVSLELS 217
SDHCP++L L+
Sbjct: 306 SDHCPITLYLA 316
>gi|150399093|ref|YP_001322860.1| exodeoxyribonuclease III Xth [Methanococcus vannielii SB]
gi|150011796|gb|ABR54248.1| exodeoxyribonuclease III Xth [Methanococcus vannielii SB]
Length = 257
Score = 93.6 bits (231), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 63/193 (32%), Positives = 99/193 (51%), Gaps = 27/193 (13%)
Query: 23 LSALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGK 81
++ K + +GRVI EFE ++L+N Y PN+ + + R+KWDK + K
Sbjct: 88 ITNYKSDKEGRVITLEFEEYFLVNVYTPNS--QRGLKRLECRQKWDKDFLNHLKTLEQKK 145
Query: 82 PLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGR 141
P+I+CGDLNV+H+EID+ +P K++ GFT ER F ++ G
Sbjct: 146 PVIFCGDLNVAHKEIDLKNP---------------KQNIKNAGFTKEERNGFDNLINSG- 189
Query: 142 LIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIEL 201
+D +R L+ E + +S+ N K G RIDYF +S++L++R+ +
Sbjct: 190 FLDTFRELNNEPENYTWWSYRFNAREKNIG--WRIDYFCISKKLRERL------KDAFIM 241
Query: 202 EGFYGSDHCPVSL 214
GSDHCPV +
Sbjct: 242 SEVLGSDHCPVGI 254
>gi|301066021|ref|YP_003788044.1| exonuclease III [Lactobacillus casei str. Zhang]
gi|417980207|ref|ZP_12620888.1| exodeoxyribonuclease III [Lactobacillus casei 12A]
gi|300438428|gb|ADK18194.1| Exonuclease III [Lactobacillus casei str. Zhang]
gi|410525434|gb|EKQ00336.1| exodeoxyribonuclease III [Lactobacillus casei 12A]
Length = 252
Score = 93.6 bits (231), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 63/190 (33%), Positives = 92/190 (48%), Gaps = 29/190 (15%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIW 85
+++ +GR+I E+ FYL+ Y PN+G E R++WDK + Q + K PL++
Sbjct: 84 EHDTEGRIITLEYPNFYLMTVYTPNSG--GELKRLDYRQQWDKDFLAYTNQLAAKKPLVY 141
Query: 86 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 145
CGDLNV+H+EID+ + +K + GFT ER F L G ID
Sbjct: 142 CGDLNVAHQEIDLKN---------------DKTNHHNAGFTDEERADFTKQLDSG-FIDT 185
Query: 146 YRFLHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGF 204
+R L+ + +S WS + RIDYF+ S + K I ++ L
Sbjct: 186 FRNLYPDT---VTYSWWSYRFHARANNAGWRIDYFVSSRDFKPYIQDAKI------LTDI 236
Query: 205 YGSDHCPVSL 214
GSDHCPV L
Sbjct: 237 MGSDHCPVEL 246
>gi|118586338|ref|ZP_01543790.1| exodeoxyribonuclease A [Oenococcus oeni ATCC BAA-1163]
gi|290891237|ref|ZP_06554299.1| hypothetical protein AWRIB429_1689 [Oenococcus oeni AWRIB429]
gi|419758405|ref|ZP_14284722.1| exonuclease III [Oenococcus oeni AWRIB304]
gi|419856613|ref|ZP_14379334.1| exonuclease III [Oenococcus oeni AWRIB202]
gi|421184797|ref|ZP_15642213.1| exonuclease III [Oenococcus oeni AWRIB318]
gi|421188178|ref|ZP_15645517.1| exonuclease III [Oenococcus oeni AWRIB419]
gi|421189096|ref|ZP_15646415.1| exonuclease III [Oenococcus oeni AWRIB422]
gi|421191944|ref|ZP_15649214.1| exonuclease III [Oenococcus oeni AWRIB548]
gi|421192807|ref|ZP_15650060.1| exonuclease III [Oenococcus oeni AWRIB553]
gi|421195120|ref|ZP_15652332.1| exonuclease III [Oenococcus oeni AWRIB568]
gi|421196989|ref|ZP_15654170.1| exonuclease III [Oenococcus oeni AWRIB576]
gi|118433229|gb|EAV39943.1| exodeoxyribonuclease A [Oenococcus oeni ATCC BAA-1163]
gi|290479201|gb|EFD87863.1| hypothetical protein AWRIB429_1689 [Oenococcus oeni AWRIB429]
gi|399905027|gb|EJN92478.1| exonuclease III [Oenococcus oeni AWRIB304]
gi|399965735|gb|EJO00301.1| exonuclease III [Oenococcus oeni AWRIB419]
gi|399966399|gb|EJO00948.1| exonuclease III [Oenococcus oeni AWRIB318]
gi|399970765|gb|EJO05056.1| exonuclease III [Oenococcus oeni AWRIB548]
gi|399973853|gb|EJO08017.1| exonuclease III [Oenococcus oeni AWRIB422]
gi|399974385|gb|EJO08548.1| exonuclease III [Oenococcus oeni AWRIB553]
gi|399976308|gb|EJO10334.1| exonuclease III [Oenococcus oeni AWRIB576]
gi|399976904|gb|EJO10917.1| exonuclease III [Oenococcus oeni AWRIB568]
gi|410499658|gb|EKP91089.1| exonuclease III [Oenococcus oeni AWRIB202]
Length = 273
Score = 93.6 bits (231), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 60/189 (31%), Positives = 93/189 (49%), Gaps = 30/189 (15%)
Query: 31 DGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDL 89
+GR++ E+ FYLLN Y PN+G + R KWD + + ++ S K +I+ GDL
Sbjct: 110 EGRIVTLEYPDFYLLNVYTPNSG--DGLRRLPARGKWDDQFRHYISDLSERKIVIFSGDL 167
Query: 90 NVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFL 149
NV+HEEID+ + + + GFT ER++F +L G ID +R
Sbjct: 168 NVAHEEIDLKN---------------SSSNHNSAGFTDQEREKFSRLLSAG-FIDTWRLQ 211
Query: 150 HKEKDMDCGFSW--SGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGS 207
H + + +SW N + K RIDY+IVS K++I+ M G +
Sbjct: 212 HPK---EIAYSWWSQRNRLAKTNNAGWRIDYYIVSNSAKEKIVKTGMIDTGTR------A 262
Query: 208 DHCPVSLEL 216
DH P+ L++
Sbjct: 263 DHAPIYLQM 271
>gi|116494506|ref|YP_806240.1| exonuclease III [Lactobacillus casei ATCC 334]
gi|191637944|ref|YP_001987110.1| exodeoxyribonuclease III [Lactobacillus casei BL23]
gi|227535523|ref|ZP_03965572.1| exodeoxyribonuclease III [Lactobacillus paracasei subsp. paracasei
ATCC 25302]
gi|385819687|ref|YP_005856074.1| Exodeoxyribonuclease III [Lactobacillus casei LC2W]
gi|385822845|ref|YP_005859187.1| Exodeoxyribonuclease III [Lactobacillus casei BD-II]
gi|417983078|ref|ZP_12623720.1| exodeoxyribonuclease III [Lactobacillus casei 21/1]
gi|417989182|ref|ZP_12629696.1| exodeoxyribonuclease III [Lactobacillus casei A2-362]
gi|417992549|ref|ZP_12632904.1| exodeoxyribonuclease III [Lactobacillus casei CRF28]
gi|417995780|ref|ZP_12636067.1| exodeoxyribonuclease III [Lactobacillus casei M36]
gi|417998717|ref|ZP_12638932.1| exodeoxyribonuclease III [Lactobacillus casei T71499]
gi|418004708|ref|ZP_12644721.1| exodeoxyribonuclease III [Lactobacillus casei UW1]
gi|418013374|ref|ZP_12653018.1| exodeoxyribonuclease III [Lactobacillus casei Lpc-37]
gi|116104656|gb|ABJ69798.1| Exonuclease III [Lactobacillus casei ATCC 334]
gi|190712246|emb|CAQ66252.1| Exodeoxyribonuclease III [Lactobacillus casei BL23]
gi|227186845|gb|EEI66912.1| exodeoxyribonuclease III [Lactobacillus paracasei subsp. paracasei
ATCC 25302]
gi|327382014|gb|AEA53490.1| Exodeoxyribonuclease III [Lactobacillus casei LC2W]
gi|327385172|gb|AEA56646.1| Exodeoxyribonuclease III [Lactobacillus casei BD-II]
gi|410528859|gb|EKQ03697.1| exodeoxyribonuclease III [Lactobacillus casei 21/1]
gi|410533128|gb|EKQ07815.1| exodeoxyribonuclease III [Lactobacillus casei CRF28]
gi|410536484|gb|EKQ11077.1| exodeoxyribonuclease III [Lactobacillus casei M36]
gi|410539278|gb|EKQ13814.1| exodeoxyribonuclease III [Lactobacillus casei A2-362]
gi|410540321|gb|EKQ14836.1| exodeoxyribonuclease III [Lactobacillus casei T71499]
gi|410548944|gb|EKQ23126.1| exodeoxyribonuclease III [Lactobacillus casei UW1]
gi|410555900|gb|EKQ29831.1| exodeoxyribonuclease III [Lactobacillus casei Lpc-37]
Length = 252
Score = 93.6 bits (231), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 63/190 (33%), Positives = 92/190 (48%), Gaps = 29/190 (15%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIW 85
+++ +GR+I E+ FYL+ Y PN+G E R++WDK + Q + K PL++
Sbjct: 84 EHDTEGRIITLEYPNFYLMTVYTPNSG--GELKRLDYRQQWDKDFLAYTNQLAAKKPLVY 141
Query: 86 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 145
CGDLNV+H+EID+ + +K + GFT ER F L G ID
Sbjct: 142 CGDLNVAHQEIDLKN---------------DKTNHHNAGFTDEERADFTKQLDSG-FIDT 185
Query: 146 YRFLHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGF 204
+R L+ + +S WS + RIDYF+ S + K I ++ L
Sbjct: 186 FRNLYPDT---VTYSWWSYRFHARANNAGWRIDYFVSSRDFKPYIQDAKI------LTDI 236
Query: 205 YGSDHCPVSL 214
GSDHCPV L
Sbjct: 237 MGSDHCPVEL 246
>gi|167756678|ref|ZP_02428805.1| hypothetical protein CLORAM_02216 [Clostridium ramosum DSM 1402]
gi|167702853|gb|EDS17432.1| exodeoxyribonuclease III [Clostridium ramosum DSM 1402]
Length = 251
Score = 93.6 bits (231), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 63/191 (32%), Positives = 95/191 (49%), Gaps = 26/191 (13%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIW 85
+++ +GRV+ E+E FYL+N Y PN+ + E R W+ ++ KP+I
Sbjct: 84 EHDHEGRVVTLEYEKFYLVNCYTPNS--QNELKRLDYRMHWEDDFLAYLKSLEKSKPVIL 141
Query: 86 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 145
CGDLNV+H+EID+ +P K + GF+ ER + +L+ G ID
Sbjct: 142 CGDLNVAHQEIDLKNP---------------KTNRKNAGFSDEERAKMTNLLENG-FIDT 185
Query: 146 YRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 205
YR+L+ +++ + WS + RIDYFIVS+ LK+ I
Sbjct: 186 YRYLYPDQEGVYSW-WSYRFNARKNNAGWRIDYFIVSDCLKEGI------KEAFICTDIL 238
Query: 206 GSDHCPVSLEL 216
GSDHCPV LE+
Sbjct: 239 GSDHCPVGLEI 249
>gi|418010415|ref|ZP_12650192.1| exodeoxyribonuclease III [Lactobacillus casei Lc-10]
gi|410553904|gb|EKQ27892.1| exodeoxyribonuclease III [Lactobacillus casei Lc-10]
Length = 252
Score = 93.6 bits (231), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 63/190 (33%), Positives = 92/190 (48%), Gaps = 29/190 (15%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIW 85
+++ +GR+I E+ FYL+ Y PN+G E R++WDK + Q + K PL++
Sbjct: 84 EHDTEGRIITLEYPNFYLMTVYTPNSG--GELKRLDYRQQWDKDFLAYTNQLAAKKPLVY 141
Query: 86 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 145
CGDLNV+H+EID+ + +K + GFT ER F L G ID
Sbjct: 142 CGDLNVAHQEIDLKN---------------DKTNHHNAGFTDEERADFTKQLDSG-FIDT 185
Query: 146 YRFLHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGF 204
+R L+ + +S WS + RIDYF+ S + K I ++ L
Sbjct: 186 FRNLYPDT---VTYSWWSYRFHARANNAGWRIDYFVSSRDFKPYIQDAKI------LTDI 236
Query: 205 YGSDHCPVSL 214
GSDHCPV L
Sbjct: 237 MGSDHCPVEL 246
>gi|328947089|ref|YP_004364426.1| exodeoxyribonuclease III Xth [Treponema succinifaciens DSM 2489]
gi|328447413|gb|AEB13129.1| exodeoxyribonuclease III Xth [Treponema succinifaciens DSM 2489]
Length = 251
Score = 93.6 bits (231), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 64/192 (33%), Positives = 99/192 (51%), Gaps = 28/192 (14%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIW 85
+++ +GRVI E+E F+L+ Y PN+ ++E + R KW+ + ++ + K +I
Sbjct: 84 EHDTEGRVITLEYEKFFLVTVYTPNS--QDELRRLEYRMKWEDDFRAYLKTLALKKGVIV 141
Query: 86 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 145
CGD+NV+HEEID+ +P K + GFT ER + +L G D+
Sbjct: 142 CGDMNVAHEEIDIKNP---------------KTNRRNAGFTDEERGKMTELLSSG-FTDS 185
Query: 146 YRFLHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGF 204
+R H D +S WS + + RIDYF+VS+ +KD+ M G I E
Sbjct: 186 FR--HFYPDTAGVYSWWSYRFHAREKNTGWRIDYFLVSDSIKDK-----MTGAKIHTE-I 237
Query: 205 YGSDHCPVSLEL 216
GSDHCPV L++
Sbjct: 238 LGSDHCPVELDM 249
>gi|341882542|gb|EGT38477.1| CBN-EXO-3 protein [Caenorhabditis brenneri]
Length = 293
Score = 93.6 bits (231), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 62/190 (32%), Positives = 101/190 (53%), Gaps = 26/190 (13%)
Query: 28 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 86
++ GR+I+AE+ FY + Y PN+G K + ++R KW+K + + + + + KP+I+
Sbjct: 127 FDSAGRLIIAEYSQFYFMGAYVPNSGAKLV--NLEKRGKWEKLLTDKLREMNEKKPVIYG 184
Query: 87 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 146
GDLNV+H EID+ +PE N+ GFT ER FG +L+ G D++
Sbjct: 185 GDLNVAHNEIDLKNPE------------SNRNK--TAGFTDQERGWFGEMLEIG-FTDSF 229
Query: 147 RFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYG 206
R LH E +S+ N K G R+DYF+VS+ + D + ++ + G
Sbjct: 230 RKLHPESKKYSFWSYLANSREKDVG--WRLDYFVVSDRIMDNVKKSDI------MSAVKG 281
Query: 207 SDHCPVSLEL 216
SDH P+ ++L
Sbjct: 282 SDHAPIVMQL 291
>gi|257870107|ref|ZP_05649760.1| exodeoxyribonuclease [Enterococcus gallinarum EG2]
gi|257804271|gb|EEV33093.1| exodeoxyribonuclease [Enterococcus gallinarum EG2]
Length = 261
Score = 93.6 bits (231), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 58/199 (29%), Positives = 98/199 (49%), Gaps = 26/199 (13%)
Query: 20 HFLLSALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC- 78
H+ + +++ +GRVI E+ F+L+ Y PN + E R W+ + ++
Sbjct: 88 HYGIGIEEHDAEGRVITLEYPEFFLVTCYTPNA--QNELRRLDYRMTWEDAFRAYLTDLK 145
Query: 79 SGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILK 138
KP+I CGDLNV+H+ ID+ + K + GFT ER++F +L
Sbjct: 146 QQKPVILCGDLNVAHQNIDLKNW---------------KTNQKNAGFTPEEREKFSTLLS 190
Query: 139 EGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHG 198
G D +R+ + + + + WS + RIDYF+VS++L DR++ ++
Sbjct: 191 AG-FTDTFRYFYPDAEGIYSW-WSYRFNARKNNAGWRIDYFVVSDDLNDRLVDAKIHTEI 248
Query: 199 IELEGFYGSDHCPVSLELS 217
+ GSDHCPV L+L+
Sbjct: 249 L------GSDHCPVELQLN 261
>gi|260909404|ref|ZP_05916112.1| exodeoxyribonuclease III [Prevotella sp. oral taxon 472 str. F0295]
gi|260636496|gb|EEX54478.1| exodeoxyribonuclease III [Prevotella sp. oral taxon 472 str. F0295]
Length = 249
Score = 93.6 bits (231), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 61/192 (31%), Positives = 97/192 (50%), Gaps = 29/192 (15%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIW 85
+++ +GRVI E TF+L+ Y PN+ ++E R +W+ Q ++ KP+I
Sbjct: 84 QHDHEGRVITLEMPTFFLVTVYTPNS--QDELRRLDYRMQWEDDFQAYLHDLDKRKPVIV 141
Query: 86 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 145
CGD+NV+H+EID+ +P K + GFT ER++ +L G D
Sbjct: 142 CGDMNVAHQEIDLKNP---------------KTNRRNAGFTDEERQKMTQLLGAG-FTDT 185
Query: 146 YRFLHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGF 204
+R+ + E + +S WS + R RIDYF+VS+ L+ ++ ++
Sbjct: 186 FRWKYPE---EITYSWWSYRFKARERNTGWRIDYFLVSDRLQSEVLDAKIH------TDI 236
Query: 205 YGSDHCPVSLEL 216
GSDHCPV LEL
Sbjct: 237 LGSDHCPVELEL 248
>gi|312381587|gb|EFR27301.1| hypothetical protein AND_06082 [Anopheles darlingi]
Length = 517
Score = 93.6 bits (231), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 68/210 (32%), Positives = 109/210 (51%), Gaps = 28/210 (13%)
Query: 31 DGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWCGDL 89
DGR++ AE+E FYL+ Y PN G K + +R +WD++ +++ + S KP+I CGD+
Sbjct: 113 DGRLLTAEYEKFYLVCVYVPNAGNKLV--TLPKRMRWDEKFHQYLRELDSKKPVILCGDM 170
Query: 90 NVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFL 149
NV+HEEID+++P+ NK++ GFT ER +L G +D +R L
Sbjct: 171 NVAHEEIDLANPK------------TNKKN---AGFTQEERDGLSKLLSFG-FVDTFRQL 214
Query: 150 HKEKDMDCGFSWSGNPIGKYRGKRM--RIDYFIVSEELKDRIIACEMQGHGIELE----G 203
+ ++ F W+ +G R K + R+DYFIVS+ D++ M H G
Sbjct: 215 YPDRKAAYSF-WTY--MGGARAKNVGWRLDYFIVSQRFTDKVTDNVMAEHSASPTAPHGG 271
Query: 204 FYGSDHCPVSLELSEASSDSEKREKKNLDE 233
G ++ V ++L S + E + LDE
Sbjct: 272 APGEEYGGVFIDLHFLSEEEETDLIRTLDE 301
>gi|223985143|ref|ZP_03635238.1| hypothetical protein HOLDEFILI_02544 [Holdemania filiformis DSM
12042]
gi|223962889|gb|EEF67306.1| hypothetical protein HOLDEFILI_02544 [Holdemania filiformis DSM
12042]
Length = 252
Score = 93.6 bits (231), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 65/187 (34%), Positives = 96/187 (51%), Gaps = 27/187 (14%)
Query: 31 DGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDL 89
+GRVI EFE FY + Y PN+ KEE R +W+ + + + + KP+++ GDL
Sbjct: 90 EGRVITLEFEQFYFVTAYVPNS--KEELARLDYRMQWEDAMARHLAKLNETKPVVYTGDL 147
Query: 90 NVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFL 149
NV+ EEID+ +P K N + PGF+ ER++ +L G D +R L
Sbjct: 148 NVAVEEIDLKNP------KTNHF---------NPGFSDQERQKMRDLLSLG-FADTFRTL 191
Query: 150 HKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDH 209
+ EK +S+ N K G RIDYFIVS+ L +++ + G GSDH
Sbjct: 192 YPEKVEYSWWSYRFNSRAKNVG--WRIDYFIVSQRLMNQVKDSVIYG------DILGSDH 243
Query: 210 CPVSLEL 216
CPV +E+
Sbjct: 244 CPVGVEI 250
>gi|418001612|ref|ZP_12641751.1| exodeoxyribonuclease III [Lactobacillus casei UCD174]
gi|410546206|gb|EKQ20470.1| exodeoxyribonuclease III [Lactobacillus casei UCD174]
Length = 252
Score = 93.2 bits (230), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 63/190 (33%), Positives = 93/190 (48%), Gaps = 29/190 (15%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIW 85
+++ +GR+I E+ FYL+ Y PN+G E R++WDK + Q + K PL++
Sbjct: 84 EHDTEGRIITLEYPNFYLMTVYTPNSG--GELKRLDYRQQWDKDFLAYTNQLAAKKPLVY 141
Query: 86 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 145
CGDLNV+H+EID+ + +K + GFT ER F L +G ID
Sbjct: 142 CGDLNVAHQEIDLKN---------------DKTNHHNAGFTDEERADFTKQL-DGGFIDT 185
Query: 146 YRFLHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGF 204
+R L+ + +S WS + RIDYF+ S + K I ++ L
Sbjct: 186 FRNLYPDT---VTYSWWSYRFHARANNAGWRIDYFVSSRDFKPYIQDAKI------LTDI 236
Query: 205 YGSDHCPVSL 214
GSDHCPV L
Sbjct: 237 MGSDHCPVEL 246
>gi|357050363|ref|ZP_09111563.1| exodeoxyribonuclease [Enterococcus saccharolyticus 30_1]
gi|355381448|gb|EHG28572.1| exodeoxyribonuclease [Enterococcus saccharolyticus 30_1]
Length = 250
Score = 93.2 bits (230), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 58/199 (29%), Positives = 98/199 (49%), Gaps = 26/199 (13%)
Query: 20 HFLLSALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC- 78
H+ + +++ +GRVI E+ F+L+ Y PN + E R W+ + ++
Sbjct: 77 HYGIGIEEHDAEGRVITLEYPEFFLVTCYTPNA--QNELRRLDYRMTWEDAFRAYLTDLK 134
Query: 79 SGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILK 138
KP+I CGDLNV+H+ ID+ + K + GFT ER++F +L
Sbjct: 135 QQKPVILCGDLNVAHQNIDLKNW---------------KTNQKNAGFTPEEREKFSTLLS 179
Query: 139 EGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHG 198
G D +R+ + + + + WS + RIDYF+VS++L DR++ ++
Sbjct: 180 AG-FTDTFRYFYPDAEGIYSW-WSYRFNARKNNAGWRIDYFVVSDDLNDRLVDAKIHTEI 237
Query: 199 IELEGFYGSDHCPVSLELS 217
+ GSDHCPV L+L+
Sbjct: 238 L------GSDHCPVELQLN 250
>gi|257413807|ref|ZP_04744296.2| exodeoxyribonuclease III [Roseburia intestinalis L1-82]
gi|257202214|gb|EEV00499.1| exodeoxyribonuclease III [Roseburia intestinalis L1-82]
gi|291538795|emb|CBL11906.1| exodeoxyribonuclease III [Roseburia intestinalis XB6B4]
Length = 256
Score = 93.2 bits (230), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 56/191 (29%), Positives = 97/191 (50%), Gaps = 26/191 (13%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIW 85
+++ +GRVI E+ FY++ Y PN+ + E R +W+ + ++ + G KP+I
Sbjct: 88 EHDKEGRVITLEYPDFYMVTCYTPNS--QNELARLPYRMQWEDDFRAYLKRLDGSKPVIL 145
Query: 86 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 145
CGDLNV+HEEID+ +P K + GF+ ER++ +L G D
Sbjct: 146 CGDLNVAHEEIDLKNP---------------KTNRKNAGFSDEEREKMTKLLDAG-FTDT 189
Query: 146 YRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 205
+R+ + + + + WS + + RIDYFI S+ + D++ ++ +
Sbjct: 190 FRYFYPDTEQIYSW-WSYRFRAREKNAGWRIDYFITSKRMNDKLTGAKIH------TDVF 242
Query: 206 GSDHCPVSLEL 216
GSDHCPV L++
Sbjct: 243 GSDHCPVELDI 253
>gi|171915906|ref|ZP_02931376.1| exodeoxyribonuclease III [Verrucomicrobium spinosum DSM 4136]
Length = 250
Score = 93.2 bits (230), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 62/191 (32%), Positives = 93/191 (48%), Gaps = 27/191 (14%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIW 85
+++ +GRVI EF +Y++N Y PN + E R WD + ++ KP++
Sbjct: 85 EHDKEGRVITVEFPDYYVVNVYTPNA--QAELARLPYRLLWDDAFRLYLKNLEQTKPVLA 142
Query: 86 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 145
CGDLNV+H EID++ P KE+ PGF+ ER FG +L+ G +D
Sbjct: 143 CGDLNVAHNEIDIARP---------------KENRFSPGFSDQERASFGKLLESG-FVDT 186
Query: 146 YRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 205
+R +S+ N G G RIDY++ S+ LKD + + I +
Sbjct: 187 FRHFDSRPHQYSWWSYRANARGNNVG--WRIDYWLASQGLKDGLKS------SIIRPDIH 238
Query: 206 GSDHCPVSLEL 216
GSDHCPV L +
Sbjct: 239 GSDHCPVELVM 249
>gi|409996804|ref|YP_006751205.1| exodeoxyribonuclease [Lactobacillus casei W56]
gi|406357816|emb|CCK22086.1| Exodeoxyribonuclease [Lactobacillus casei W56]
Length = 290
Score = 93.2 bits (230), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 63/190 (33%), Positives = 92/190 (48%), Gaps = 29/190 (15%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIW 85
+++ +GR+I E+ FYL+ Y PN+G E R++WDK + Q + K PL++
Sbjct: 122 EHDTEGRIITLEYPNFYLMTVYTPNSG--GELKRLDYRQQWDKDFLAYTNQLAAKKPLVY 179
Query: 86 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 145
CGDLNV+H+EID+ + +K + GFT ER F L G ID
Sbjct: 180 CGDLNVAHQEIDLKN---------------DKTNHHNAGFTDEERADFTKQLDSG-FIDT 223
Query: 146 YRFLHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGF 204
+R L+ + +S WS + RIDYF+ S + K I ++ L
Sbjct: 224 FRNLYPDT---VTYSWWSYRFHARANNAGWRIDYFVSSRDFKPYIQDAKI------LTDI 274
Query: 205 YGSDHCPVSL 214
GSDHCPV L
Sbjct: 275 MGSDHCPVEL 284
>gi|295101467|emb|CBK99012.1| exodeoxyribonuclease III [Faecalibacterium prausnitzii L2-6]
Length = 250
Score = 93.2 bits (230), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 62/192 (32%), Positives = 98/192 (51%), Gaps = 29/192 (15%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIW 85
+++ +GRV+ E+ YL+N Y PN+ ++ R W+ + ++L+ K P+I
Sbjct: 84 EHDHEGRVLTLEYPESYLVNCYTPNS--QDGLKRLDYRMTWEDAFRAYLLELDAKKPVIL 141
Query: 86 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 145
CGDLNV+H+EID+ + AK N GFT ER + +L G D+
Sbjct: 142 CGDLNVAHQEIDIKN------AKTNRM---------SAGFTDQERAKMTELLAVG-FTDS 185
Query: 146 YRFLHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGF 204
+R +H + + +S WS + + RIDYFIVS + D+I A E+
Sbjct: 186 FRAIHPD---EVKYSWWSYRFHAREKNAGWRIDYFIVSNRIADKIKAAEIHNE------V 236
Query: 205 YGSDHCPVSLEL 216
+GSDHCPV L++
Sbjct: 237 FGSDHCPVELDI 248
>gi|257066091|ref|YP_003152347.1| exodeoxyribonuclease III Xth [Anaerococcus prevotii DSM 20548]
gi|256797971|gb|ACV28626.1| exodeoxyribonuclease III Xth [Anaerococcus prevotii DSM 20548]
Length = 274
Score = 93.2 bits (230), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 61/189 (32%), Positives = 91/189 (48%), Gaps = 29/189 (15%)
Query: 31 DGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDL 89
+GR++ EFE FY Y PN G E R +WDK +++ + KP+I GD
Sbjct: 111 EGRILTLEFEDFYFTQVYTPNAG--GELKRLPLREEWDKLYADYLAELDKNKPVIATGDF 168
Query: 90 NVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFL 149
NV+HEEID++HPE N ++ GFT ER+ F +L G D +R
Sbjct: 169 NVAHEEIDLAHPE-------NNHM--------SAGFTDEERRGFTNLLNRG-FTDTFR-- 210
Query: 150 HKEKDMDCGFSWSGNPI--GKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGS 207
H K+++ ++W + K RIDYF+VS+ L + +I + G
Sbjct: 211 HLNKNLEGAYTWWAQRVKTSKINNSGWRIDYFLVSDRLMEDVIDSTIIDSGDR------Q 264
Query: 208 DHCPVSLEL 216
DH P+ LE+
Sbjct: 265 DHTPIMLEI 273
>gi|291536334|emb|CBL09446.1| exodeoxyribonuclease III [Roseburia intestinalis M50/1]
Length = 246
Score = 93.2 bits (230), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 56/191 (29%), Positives = 97/191 (50%), Gaps = 26/191 (13%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIW 85
+++ +GRVI E+ FY++ Y PN+ + E R +W+ + ++ + G KP+I
Sbjct: 78 EHDKEGRVITLEYPDFYMVTCYTPNS--QNELARLPYRMQWEDDFRAYLKRLDGSKPVIL 135
Query: 86 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 145
CGDLNV+HEEID+ +P K + GF+ ER++ +L G D
Sbjct: 136 CGDLNVAHEEIDLKNP---------------KTNRKNAGFSDEEREKMTKLLDAG-FTDT 179
Query: 146 YRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 205
+R+ + + + + WS + + RIDYFI S+ + D++ ++ +
Sbjct: 180 FRYFYPDTEQIYSW-WSYRFRAREKNAGWRIDYFITSKRMNDKLTGAKIH------TDVF 232
Query: 206 GSDHCPVSLEL 216
GSDHCPV L++
Sbjct: 233 GSDHCPVELDI 243
>gi|42518122|ref|NP_964052.1| exodeoxyribonuclease [Lactobacillus johnsonii NCC 533]
gi|385824990|ref|YP_005861332.1| exodeoxyribonuclease III [Lactobacillus johnsonii DPC 6026]
gi|41582406|gb|AAS08018.1| exodeoxyribonuclease [Lactobacillus johnsonii NCC 533]
gi|329666434|gb|AEB92382.1| exodeoxyribonuclease III [Lactobacillus johnsonii DPC 6026]
Length = 275
Score = 93.2 bits (230), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 59/190 (31%), Positives = 94/190 (49%), Gaps = 29/190 (15%)
Query: 31 DGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDL 89
+GR++ EF+ +Y+ Y PN+G E + R+ WD++ E++ + KP+I GD
Sbjct: 111 EGRILTLEFDNYYVTQVYTPNSG--NELKRLEDRQIWDEKYTEYLQKLDKSKPVIASGDY 168
Query: 90 NVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFL 149
NV+H ID+ HPE + GFT ER+ F +LK G D +R +
Sbjct: 169 NVAHTPIDLKHPE---------------NNHHNAGFTDEERQGFDKLLKLG-FTDTFRKV 212
Query: 150 HKEKDMDCGFSWSGNPI--GKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGS 207
H +++ +SW + K RIDY+IVS+ + D++ EM G
Sbjct: 213 H--GNVEGVYSWWAQRVRTSKDNNSGWRIDYYIVSDRIADQVTKSEMIDTGDR------K 264
Query: 208 DHCPVSLELS 217
DHCP+ LE++
Sbjct: 265 DHCPIMLEIN 274
>gi|406882207|gb|EKD30059.1| hypothetical protein ACD_78C00169G0004 [uncultured bacterium (gcode
4)]
Length = 267
Score = 93.2 bits (230), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 63/195 (32%), Positives = 101/195 (51%), Gaps = 26/195 (13%)
Query: 23 LSALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GK 81
L +++ +GR+I EFE ++ + Y PN K E + R+ WD +++ + K
Sbjct: 96 LGMKEHDQEGRIITLEFEKYFFVTVYTPNA--KSELERLEYRQLWDSLFFDYLKRLEVEK 153
Query: 82 PLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGR 141
P+I CGDLNV+H+EID+++P+ PN+ W GFT ER FG L G
Sbjct: 154 PVIVCGDLNVAHQEIDLTNPK------------PNR--W-NAGFTDEERAGFGHYLANG- 197
Query: 142 LIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIEL 201
ID +R + +K + + WS + R RIDYF++SE L + + ++
Sbjct: 198 FIDTFRHFYPDKTGEYTW-WSNFFKSRDRNIGWRIDYFLISERLVTNLKSAFIR------ 250
Query: 202 EGFYGSDHCPVSLEL 216
+ GSDHCPV +++
Sbjct: 251 QEIRGSDHCPVGIKI 265
>gi|225376286|ref|ZP_03753507.1| hypothetical protein ROSEINA2194_01924 [Roseburia inulinivorans DSM
16841]
gi|225211932|gb|EEG94286.1| hypothetical protein ROSEINA2194_01924 [Roseburia inulinivorans DSM
16841]
Length = 255
Score = 93.2 bits (230), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 63/189 (33%), Positives = 96/189 (50%), Gaps = 26/189 (13%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIW 85
+++ +GRVI E++ FYL+ Y PN+ + E R +W++ F+ + KP+I
Sbjct: 88 EHDHEGRVITLEYDAFYLVTCYTPNS--QNELARLPYRMQWEEDFLAFLKRLDEVKPVIV 145
Query: 86 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 145
CGDLNV+HEEID+ +P K + GF+ ER + +L G D
Sbjct: 146 CGDLNVAHEEIDLKNP---------------KTNRKNAGFSDEERAKMTTLLNSG-FTDT 189
Query: 146 YRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 205
+R+ + +K+ + WS + + RIDYFI S L ++ +Q GI E Y
Sbjct: 190 FRYFYPDKEGIYSW-WSYRFKAREKNAGWRIDYFITSRCLDEK-----LQSAGIHTE-VY 242
Query: 206 GSDHCPVSL 214
GSDHCPV L
Sbjct: 243 GSDHCPVEL 251
>gi|390176534|ref|XP_003736152.1| GA16470, isoform B [Drosophila pseudoobscura pseudoobscura]
gi|388858704|gb|EIM52225.1| GA16470, isoform B [Drosophila pseudoobscura pseudoobscura]
Length = 675
Score = 93.2 bits (230), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 61/184 (33%), Positives = 93/184 (50%), Gaps = 26/184 (14%)
Query: 32 GRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGDLN 90
GR+I AE+E FYL+N Y PN+G K + + R +W+K +V + K ++ CGD+N
Sbjct: 513 GRMITAEYEKFYLINVYVPNSGRK--LVNLEARMRWEKLFHSYVQKLDALKAVVICGDMN 570
Query: 91 VSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLH 150
VSH EID+ +P K + GFT ER + +L G +D +R L+
Sbjct: 571 VSHNEIDLENP---------------KTNTKNAGFTKEERDKMTELLGLG-FVDTFRHLY 614
Query: 151 KEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHC 210
+K + W+ + R R+DY IVSE R++ H I + GSDHC
Sbjct: 615 PDKKGAYTY-WTYMSNARARNVGWRLDYCIVSERFVPRVV-----DHVIRKQ-LLGSDHC 667
Query: 211 PVSL 214
P+++
Sbjct: 668 PITV 671
>gi|294674336|ref|YP_003574952.1| exodeoxyribonuclease III [Prevotella ruminicola 23]
gi|294473057|gb|ADE82446.1| exodeoxyribonuclease III [Prevotella ruminicola 23]
Length = 249
Score = 93.2 bits (230), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 60/192 (31%), Positives = 99/192 (51%), Gaps = 29/192 (15%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIW 85
+++ +GRVI E E FYL+ Y PN+ ++ R W+ + ++ K P+I
Sbjct: 84 EHDHEGRVITLEMEDFYLVTCYTPNS--QDGLKRLDYRMTWENDFRAYLKGLDAKKPVIL 141
Query: 86 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 145
CGDLNV+H+EID+ +P+ ++N GFT ER++F +L G D+
Sbjct: 142 CGDLNVAHQEIDLKNPK---TNRMNA------------GFTDQEREQFSTLLASG-FTDS 185
Query: 146 YRFLHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGF 204
+R+ + E+ +S WS + + RIDYF++S+ L++R+ + +
Sbjct: 186 FRYKYPEQ---VTYSWWSYRFQARQKNAGWRIDYFVISDRLRERMDDARIHTQIL----- 237
Query: 205 YGSDHCPVSLEL 216
GSDHCPV L L
Sbjct: 238 -GSDHCPVELTL 248
>gi|373461425|ref|ZP_09553165.1| exodeoxyribonuclease III (xth) [Prevotella maculosa OT 289]
gi|371952383|gb|EHO70222.1| exodeoxyribonuclease III (xth) [Prevotella maculosa OT 289]
Length = 251
Score = 93.2 bits (230), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 61/192 (31%), Positives = 95/192 (49%), Gaps = 29/192 (15%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIW 85
+++ +GRVI E+E FYL+N Y PN ++ R W+ Q ++ + KP+I
Sbjct: 85 EHDHEGRVITLEYEDFYLVNVYTPNA--QDGLRRLDYRMTWEDDFQAYLHRLDARKPVIV 142
Query: 86 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 145
CGD+NV+HEEID+ +P K + GFT ER + +L G D
Sbjct: 143 CGDMNVAHEEIDLKNP---------------KTNHRNAGFTDEERAKMTQLLGNG-FTDT 186
Query: 146 YRFLHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGF 204
+R L+ E +S WS + + RIDYF++S+ L+ R+ +
Sbjct: 187 FRNLYPEA---IKYSWWSYRFRAREKNTGWRIDYFLISDRLRPRLKEAAIHNE------I 237
Query: 205 YGSDHCPVSLEL 216
+GSDHCPV ++L
Sbjct: 238 FGSDHCPVEVDL 249
>gi|313897464|ref|ZP_07831007.1| exodeoxyribonuclease III [Clostridium sp. HGF2]
gi|312957834|gb|EFR39459.1| exodeoxyribonuclease III [Clostridium sp. HGF2]
Length = 254
Score = 93.2 bits (230), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 63/199 (31%), Positives = 103/199 (51%), Gaps = 26/199 (13%)
Query: 23 LSALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GK 81
L +++ +GRVI E+E FYL+ Y PN+ K+ R W+ + ++ + + K
Sbjct: 80 LGIEEHDHEGRVITCEYEDFYLVCVYTPNS--KDGLLRLDYRMVWEDAFRAYLHKLNETK 137
Query: 82 PLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGR 141
++ CGDLNV+H+EID+ +P K + GFT ER + +L+ G
Sbjct: 138 SVLVCGDLNVAHKEIDLKNP---------------KTNRRNAGFTDEERGKMSVLLESG- 181
Query: 142 LIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIEL 201
ID++R+L+ +++ + WS + + RIDYF+VSE+ K+ I +
Sbjct: 182 FIDSFRYLYPKQEGIYSW-WSYRFKAREKNAGWRIDYFLVSEDAKEAIREARIH------ 234
Query: 202 EGFYGSDHCPVSLELSEAS 220
YGSDHCPVSLE + +
Sbjct: 235 TDIYGSDHCPVSLEFDKKA 253
>gi|256847688|ref|ZP_05553133.1| exodeoxyribonuclease III [Lactobacillus coleohominis 101-4-CHN]
gi|256715377|gb|EEU30353.1| exodeoxyribonuclease III [Lactobacillus coleohominis 101-4-CHN]
Length = 275
Score = 93.2 bits (230), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 60/189 (31%), Positives = 91/189 (48%), Gaps = 29/189 (15%)
Query: 31 DGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWCGDL 89
+GR+I EF F++ Y PN+G R+ WD R +E++ Q KP+I GD
Sbjct: 111 EGRMITLEFPYFFVTEVYTPNSG--TGLRRLAERQIWDDRYREYLQQLDQQKPVIASGDF 168
Query: 90 NVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFL 149
NV+HE ID++HPE + GFT ER+ F +LK G D++R L
Sbjct: 169 NVAHEPIDLAHPE---------------NNHHSAGFTDEEREHFTKLLKAG-FTDSFRHL 212
Query: 150 HKEKDMDCGFSWSGNPI--GKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGS 207
H E+ +SW + K RIDY++VS+ + D+++ M G
Sbjct: 213 HPEE--KGAYSWWAQRVITSKQNNSGWRIDYWLVSDRIADKVVKSSMIDTGAR------R 264
Query: 208 DHCPVSLEL 216
DH P+ L++
Sbjct: 265 DHTPIELDI 273
>gi|238853021|ref|ZP_04643416.1| exodeoxyribonuclease III [Lactobacillus gasseri 202-4]
gi|238834359|gb|EEQ26601.1| exodeoxyribonuclease III [Lactobacillus gasseri 202-4]
Length = 275
Score = 93.2 bits (230), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 59/190 (31%), Positives = 93/190 (48%), Gaps = 29/190 (15%)
Query: 31 DGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWCGDL 89
+GR++ EF+ +Y+ Y PN+G E R+ WD++ E++ + KP+I GD
Sbjct: 111 EGRILTLEFDNYYVTQVYTPNSG--NELKRLDDRQVWDEKYTEYLQKLDQNKPVIASGDY 168
Query: 90 NVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFL 149
NV+H ID+ HPE + GFT ER+ F +LK G D +R +
Sbjct: 169 NVAHTPIDLKHPE---------------SNHHNAGFTDEERQDFDKLLKLG-FTDTFRKV 212
Query: 150 HKEKDMDCGFSWSGNPI--GKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGS 207
H +++ +SW + K RIDY+IVS + D++ EM L+
Sbjct: 213 H--GNVEGVYSWWAQRVRTSKANNSGWRIDYYIVSNRIADQVTKSEM------LDTGERK 264
Query: 208 DHCPVSLELS 217
DHCP+ LE++
Sbjct: 265 DHCPIMLEIN 274
>gi|227889124|ref|ZP_04006929.1| exodeoxyribonuclease III [Lactobacillus johnsonii ATCC 33200]
gi|227850353|gb|EEJ60439.1| exodeoxyribonuclease III [Lactobacillus johnsonii ATCC 33200]
Length = 275
Score = 93.2 bits (230), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 59/190 (31%), Positives = 94/190 (49%), Gaps = 29/190 (15%)
Query: 31 DGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDL 89
+GR++ EF+ +Y+ Y PN+G E + R+ WD++ E++ + KP+I GD
Sbjct: 111 EGRILTLEFDNYYVTQVYTPNSG--NELKRLKDRQIWDEKYTEYLQKLDKSKPVIASGDY 168
Query: 90 NVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFL 149
NV+H ID+ HPE + GFT ER+ F +LK G D +R +
Sbjct: 169 NVAHTPIDLKHPE---------------NNHHNAGFTDEERQGFDKLLKLG-FTDTFRKV 212
Query: 150 HKEKDMDCGFSWSGNPI--GKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGS 207
H +++ +SW + K RIDY+IVS+ + D++ EM G
Sbjct: 213 H--GNVEGVYSWWAQRVRTSKDNNSGWRIDYYIVSDRIADQVTKSEMIDTGDR------K 264
Query: 208 DHCPVSLELS 217
DHCP+ LE++
Sbjct: 265 DHCPIMLEIN 274
>gi|421145619|ref|ZP_15605476.1| exodeoxyribonuclease III [Fusobacterium nucleatum subsp. fusiforme
ATCC 51190]
gi|395487984|gb|EJG08882.1| exodeoxyribonuclease III [Fusobacterium nucleatum subsp. fusiforme
ATCC 51190]
Length = 253
Score = 93.2 bits (230), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 66/201 (32%), Positives = 102/201 (50%), Gaps = 38/201 (18%)
Query: 23 LSALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGK 81
L +++ +GRVI EFE FY++ Y PN+ K++ R W+ ++++ K
Sbjct: 80 LGIEEHDKEGRVITLEFEKFYMVTVYTPNS--KDKLLRLDYRMTWEDEFRKYLKNLEKKK 137
Query: 82 PLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGR 141
++ CGDLNV+HEEID+ +P K + GFT ER +F +L G
Sbjct: 138 AVVVCGDLNVAHEEIDLKNP---------------KTNRRNAGFTDEERGKFTELLDSG- 181
Query: 142 LIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRM------RIDYFIVSEELKDRIIACEMQ 195
ID +R+ + +++ +SW YRG+ RIDYF+VS+ L+ ++ E+
Sbjct: 182 FIDTFRYFY--PNLEQVYSWWS-----YRGRARENNAGWRIDYFVVSKGLEKNLVDAEIH 234
Query: 196 GHGIELEGFYGSDHCPVSLEL 216
IE GSDHCPV L L
Sbjct: 235 TQ-IE-----GSDHCPVVLIL 249
>gi|325299788|ref|YP_004259705.1| exodeoxyribonuclease III Xth [Bacteroides salanitronis DSM 18170]
gi|324319341|gb|ADY37232.1| exodeoxyribonuclease III Xth [Bacteroides salanitronis DSM 18170]
Length = 251
Score = 93.2 bits (230), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 61/189 (32%), Positives = 97/189 (51%), Gaps = 26/189 (13%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIW 85
+++ +GRVI E E FYL+ Y PN+ ++ R W+ + ++L+ K P++
Sbjct: 84 EHDREGRVITLEMENFYLVTVYTPNS--QDGLKRLDYRMTWEDAFRRYLLELDAKKPVLV 141
Query: 86 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 145
CGDLNV+H+EID+ +P K + GFT ER++F +L G ID
Sbjct: 142 CGDLNVAHKEIDLKNP---------------KTNRMNAGFTDQEREKFQTLLDAG-FIDT 185
Query: 146 YRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 205
+R+ + E++ + WS + + RIDYF+ S L A +++ I E F
Sbjct: 186 FRYFYPEQEGIYSW-WSYRFRAREKNAGWRIDYFLASARL-----AGKLESAAIHTEIF- 238
Query: 206 GSDHCPVSL 214
GSDHCPV +
Sbjct: 239 GSDHCPVEV 247
>gi|122053846|gb|ABM65904.1| APEX1 [Ateles geoffroyi]
Length = 159
Score = 92.8 bits (229), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 59/182 (32%), Positives = 96/182 (52%), Gaps = 25/182 (13%)
Query: 37 AEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQ-CSGKPLIWCGDLNVSHEE 95
AEF++F L+ Y PN G + R++WD+ ++F+ S KPL+ CGDLNV+HEE
Sbjct: 1 AEFDSFVLVTAYVPNAG--RGLVRLEYRQRWDEAFRKFLKGLASRKPLVLCGDLNVAHEE 58
Query: 96 IDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDM 155
ID+ +P+ NK++ GFT ER+ FG +L+ L D++R L+
Sbjct: 59 IDLRNPK------------GNKKN---AGFTPQERQGFGELLQAVPLADSFRHLYPNTAY 103
Query: 156 DCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLE 215
F W+ + + R+DYF++S L + +++ + GSDHCP++L
Sbjct: 104 AYTF-WTYMMNARSKNVGWRLDYFLLSHSLLPALCDSKIRSKAL------GSDHCPITLY 156
Query: 216 LS 217
L+
Sbjct: 157 LA 158
>gi|255578467|ref|XP_002530098.1| ap endonuclease, putative [Ricinus communis]
gi|223530409|gb|EEF32297.1| ap endonuclease, putative [Ricinus communis]
Length = 486
Score = 92.8 bits (229), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 62/196 (31%), Positives = 99/196 (50%), Gaps = 27/196 (13%)
Query: 23 LSALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGK 81
L ++ +GR++ AEF++FYLLN Y PN+G + S+ R +WD + ++ + K
Sbjct: 314 LGIADHDSEGRLVTAEFDSFYLLNAYVPNSGDGLKRLSY-RVSQWDLSLSNYMKELEKSK 372
Query: 82 PLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGR 141
P+I GDLN +H+EID+ +P A + N GFT ER+ F
Sbjct: 373 PVILNGDLNCAHQEIDIYNP---AGNRRNA------------GFTDEERQSFETNFLSRG 417
Query: 142 LIDAYRFLHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIE 200
+D++R H + G++ W G+ K R+DYF+VSE + D++ +
Sbjct: 418 FVDSFRKQHPDV---VGYTYWGYRHGGRKTNKGWRLDYFLVSESISDQVHDSYI------ 468
Query: 201 LEGFYGSDHCPVSLEL 216
+ GSDHCP+ L L
Sbjct: 469 VPDVTGSDHCPIGLVL 484
>gi|116628715|ref|YP_813887.1| exonuclease III [Lactobacillus gasseri ATCC 33323]
gi|282852356|ref|ZP_06261698.1| exodeoxyribonuclease III [Lactobacillus gasseri 224-1]
gi|311111551|ref|ZP_07712948.1| exodeoxyribonuclease III [Lactobacillus gasseri MV-22]
gi|116094297|gb|ABJ59449.1| Exonuclease III [Lactobacillus gasseri ATCC 33323]
gi|282556098|gb|EFB61718.1| exodeoxyribonuclease III [Lactobacillus gasseri 224-1]
gi|311066705|gb|EFQ47045.1| exodeoxyribonuclease III [Lactobacillus gasseri MV-22]
Length = 275
Score = 92.8 bits (229), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 59/190 (31%), Positives = 93/190 (48%), Gaps = 29/190 (15%)
Query: 31 DGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWCGDL 89
+GR++ EF+ +Y+ Y PN+G E R+ WD++ E++ + KP+I GD
Sbjct: 111 EGRILTLEFDNYYVTQVYTPNSG--NELKRLDDRQVWDEKYTEYLQKLDQNKPVIASGDY 168
Query: 90 NVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFL 149
NV+H ID+ HPE + GFT ER+ F +LK G D +R +
Sbjct: 169 NVAHTPIDLKHPE---------------SNHHNAGFTDEERQDFDKLLKLG-FTDTFRKV 212
Query: 150 HKEKDMDCGFSWSGNPI--GKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGS 207
H +++ +SW + K RIDY+IVS + D++ EM L+
Sbjct: 213 H--GNVEGVYSWWAQRVRTSKANNSGWRIDYYIVSNRIADQVTKSEM------LDTGERK 264
Query: 208 DHCPVSLELS 217
DHCP+ LE++
Sbjct: 265 DHCPIMLEIN 274
>gi|169347307|ref|ZP_02866245.1| hypothetical protein CLOSPI_00022 [Clostridium spiroforme DSM 1552]
gi|169293924|gb|EDS76057.1| exodeoxyribonuclease III [Clostridium spiroforme DSM 1552]
Length = 252
Score = 92.8 bits (229), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 62/200 (31%), Positives = 102/200 (51%), Gaps = 28/200 (14%)
Query: 19 FHFLLSALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC 78
+ + ++ +++ +GRVI E+ FYL+N Y PN+ ++ + R+ W+ ++
Sbjct: 76 YSYGINIEEHDQEGRVITLEYNKFYLVNCYTPNS--QDGLKRLEYRQVWEDDFLAYLKSL 133
Query: 79 S-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAIL 137
KP+I CGDLNV+H+EID+ +P K + GF+ ER + +L
Sbjct: 134 EEKKPVILCGDLNVAHQEIDLKNP---------------KTNRKNAGFSDEERAKMTQLL 178
Query: 138 KEGRLIDAYRFLHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQG 196
G ID +R+L+ D+ +S WS + RIDYFIVS+ LK++I +
Sbjct: 179 NHG-FIDTFRYLY--PDLQGAYSWWSYRFNARKNNAGWRIDYFIVSDCLKEKIKDAYI-- 233
Query: 197 HGIELEGFYGSDHCPVSLEL 216
+ GSDHCPV L++
Sbjct: 234 ----FKDIMGSDHCPVGLDI 249
>gi|199436395|dbj|BAG70947.1| thermostable exonuclease III [Thermoplasma acidophilum]
Length = 250
Score = 92.8 bits (229), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 63/187 (33%), Positives = 92/187 (49%), Gaps = 27/187 (14%)
Query: 31 DGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWCGDL 89
+GR++ EF+ FY +N Y PN + + + ++ E+ + KPLI CGD
Sbjct: 88 EGRILNLEFDKFYFINVYFPNA--QHGLTRLDMKLDFGEKFLEYSNELRKKKPLIICGDF 145
Query: 90 NVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFL 149
NV+HEEID++ P K++ GFT ER L G +D YR
Sbjct: 146 NVAHEEIDIARP---------------KDNENNAGFTKQERDWMTKFLDSG-YVDTYRIF 189
Query: 150 HKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDH 209
KE +S+ N K G RIDYF+VS++++DR+ E+ LE GSDH
Sbjct: 190 MKEGGHYSWWSYRFNARAKNIG--WRIDYFVVSDDIRDRVKKAEI------LETVTGSDH 241
Query: 210 CPVSLEL 216
PV+LE+
Sbjct: 242 APVTLEV 248
>gi|418007606|ref|ZP_12647486.1| exodeoxyribonuclease III [Lactobacillus casei UW4]
gi|410548624|gb|EKQ22818.1| exodeoxyribonuclease III [Lactobacillus casei UW4]
Length = 252
Score = 92.8 bits (229), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 63/190 (33%), Positives = 91/190 (47%), Gaps = 29/190 (15%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIW 85
+++ +GR+I E+ FYL+ Y PN+G E R++WDK + Q + K PL++
Sbjct: 84 EHDTEGRIITLEYPNFYLMTVYTPNSG--GELKRLDYRQQWDKDFLAYTNQLAAKKPLVY 141
Query: 86 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 145
CGDLNV+H+EID+ + +K + GFT ER F L G ID
Sbjct: 142 CGDLNVAHQEIDLKN---------------DKTNHHNAGFTDEERADFTKQLDSG-FIDT 185
Query: 146 YRFLHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGF 204
+R L+ + +S WS + RIDYF+ S K I ++ L
Sbjct: 186 FRNLYPDT---VTYSWWSYRFHARANNAGWRIDYFVSSRNFKPYIQDAKI------LTDI 236
Query: 205 YGSDHCPVSL 214
GSDHCPV L
Sbjct: 237 MGSDHCPVEL 246
>gi|303232423|ref|ZP_07319115.1| exodeoxyribonuclease III [Atopobium vaginae PB189-T1-4]
gi|302481507|gb|EFL44575.1| exodeoxyribonuclease III [Atopobium vaginae PB189-T1-4]
Length = 259
Score = 92.8 bits (229), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 61/188 (32%), Positives = 88/188 (46%), Gaps = 26/188 (13%)
Query: 31 DGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIWCGDL 89
+GRV EF F+ +N Y PN+ K E R +WD+ + F+ K P+I CGD
Sbjct: 96 EGRVCALEFNDFWFVNVYTPNS--KNELARLDERMEWDEAYRSFLHTLDAKKPVITCGDF 153
Query: 90 NVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFL 149
N +HEEID+ +P N ++ GF+ ER F +L G D +R
Sbjct: 154 NCAHEEIDLKNP------------ATNHQN---AGFSDEERASFTKLLNTG-FTDTFRAA 197
Query: 150 HKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDH 209
H D WS + R RIDYF+VS+ +K+++ + YGSDH
Sbjct: 198 HPTL-TDAYSWWSYRMRSRERNAGWRIDYFLVSDRIKNQVSDARIHA------DVYGSDH 250
Query: 210 CPVSLELS 217
CPV L ++
Sbjct: 251 CPVGLTIT 258
>gi|392987530|ref|YP_006486123.1| exodeoxyribonuclease [Enterococcus hirae ATCC 9790]
gi|392334950|gb|AFM69232.1| exodeoxyribonuclease [Enterococcus hirae ATCC 9790]
Length = 250
Score = 92.8 bits (229), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 60/190 (31%), Positives = 95/190 (50%), Gaps = 26/190 (13%)
Query: 28 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWC 86
++ +GR+I E+ F+L+ Y PN+ + E R +W++ ++ + KP+I C
Sbjct: 85 HDQEGRLITLEYPEFFLVTCYTPNS--QNELKRLDYRLQWEEAFYHYLEELKKQKPVIVC 142
Query: 87 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 146
GDLNV+H+EID+ + K + GFT+ ER F +L G ID +
Sbjct: 143 GDLNVAHQEIDLKNW---------------KTNQKNAGFTMEERTAFSHLLANG-FIDTF 186
Query: 147 RFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYG 206
R+ + E+ + WS + RIDYF+ S+ELK R+I ++ G
Sbjct: 187 RYFYPEQTGIYSW-WSYRFNARKNNAGWRIDYFLTSDELKPRLIDAKIH------TSIMG 239
Query: 207 SDHCPVSLEL 216
SDHCPV L+L
Sbjct: 240 SDHCPVELDL 249
>gi|189460159|ref|ZP_03008944.1| hypothetical protein BACCOP_00795 [Bacteroides coprocola DSM 17136]
gi|189433149|gb|EDV02134.1| exodeoxyribonuclease III [Bacteroides coprocola DSM 17136]
Length = 253
Score = 92.8 bits (229), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 61/192 (31%), Positives = 101/192 (52%), Gaps = 26/192 (13%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIW 85
+++ +GRVI E E FYL+ Y PN+ ++ R W++ ++++LQ KP++
Sbjct: 86 EHDHEGRVITLEMENFYLVTVYTPNS--QDGLKRLDYRMTWEEDFRKYLLQLDRQKPVLV 143
Query: 86 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 145
CGDLNV+H+EID+ +P+ ++N GFT ER++F +L G ID
Sbjct: 144 CGDLNVAHKEIDLKNPK---TNRMNA------------GFTDQEREKFQLLLDAG-FIDT 187
Query: 146 YRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 205
+R + ++ + WS + + RIDYF+ S + D+ +Q I E F
Sbjct: 188 FRHFYPTQENIYSW-WSYRFKAREKNAGWRIDYFLASSRIADK-----LQDAKIHTEIF- 240
Query: 206 GSDHCPVSLELS 217
GSDHCPV + ++
Sbjct: 241 GSDHCPVEVTIN 252
>gi|317496610|ref|ZP_07954957.1| exodeoxyribonuclease III [Gemella morbillorum M424]
gi|316913275|gb|EFV34774.1| exodeoxyribonuclease III [Gemella morbillorum M424]
Length = 254
Score = 92.8 bits (229), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 57/194 (29%), Positives = 100/194 (51%), Gaps = 28/194 (14%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIW 85
+++ +GRVI E++ F+ + Y PN+G E R W++ + ++L+ + K ++
Sbjct: 84 EHDTEGRVITLEYDKFFFITVYTPNSG--SELKRLDYRMTWEEDFKNYLLELNKTKGVVV 141
Query: 86 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 145
CGDLNV+H EID+ +P K + GFT ER++F +L G ID
Sbjct: 142 CGDLNVAHTEIDLKNP---------------KSNTKNAGFTPEEREKFTKLLDAG-FIDT 185
Query: 146 YRFLHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGF 204
+R+ + E + +S WS + RIDYF+ S +L+ +++ ++ +
Sbjct: 186 FRYFNPE--LTGAYSWWSYRFNARKNNAGWRIDYFLTSRDLEKYLVSAKIHNDIL----- 238
Query: 205 YGSDHCPVSLELSE 218
GSDHCPV + L++
Sbjct: 239 -GSDHCPVEVVLNK 251
>gi|390176532|ref|XP_001356149.2| GA16470, isoform A [Drosophila pseudoobscura pseudoobscura]
gi|388858703|gb|EAL33209.2| GA16470, isoform A [Drosophila pseudoobscura pseudoobscura]
Length = 648
Score = 92.8 bits (229), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 61/184 (33%), Positives = 93/184 (50%), Gaps = 26/184 (14%)
Query: 32 GRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGDLN 90
GR+I AE+E FYL+N Y PN+G K + + R +W+K +V + K ++ CGD+N
Sbjct: 486 GRMITAEYEKFYLINVYVPNSGRK--LVNLEARMRWEKLFHSYVQKLDALKAVVICGDMN 543
Query: 91 VSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLH 150
VSH EID+ +P K + GFT ER + +L G +D +R L+
Sbjct: 544 VSHNEIDLENP---------------KTNTKNAGFTKEERDKMTELLGLG-FVDTFRHLY 587
Query: 151 KEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHC 210
+K + W+ + R R+DY IVSE R++ H I + GSDHC
Sbjct: 588 PDKKGAYTY-WTYMSNARARNVGWRLDYCIVSERFVPRVV-----DHVIRKQ-LLGSDHC 640
Query: 211 PVSL 214
P+++
Sbjct: 641 PITV 644
>gi|343524816|ref|ZP_08761774.1| exodeoxyribonuclease III [Streptococcus constellatus subsp.
pharyngis SK1060 = CCUG 46377]
gi|343398465|gb|EGV10998.1| exodeoxyribonuclease III [Streptococcus constellatus subsp.
pharyngis SK1060 = CCUG 46377]
Length = 275
Score = 92.8 bits (229), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 58/191 (30%), Positives = 90/191 (47%), Gaps = 29/191 (15%)
Query: 29 EPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCG 87
+ +GR+I EFE F++ Y PN G + + R+ WDK+ +++ KP++ G
Sbjct: 109 DAEGRIITLEFEKFFVTQVYTPNAG--DGLKRLEERQIWDKKYADYLTALDIEKPVLATG 166
Query: 88 DLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYR 147
D NV+H EID++HP N+ PGFT ER F +L G D +R
Sbjct: 167 DYNVAHNEIDLAHPS------------SNRR---SPGFTDEERSGFANLLNRG-FTDTFR 210
Query: 148 FLHKEKDMDCGFSW--SGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 205
++H D+ +SW + K RIDY++ S + D++ EM G
Sbjct: 211 YIH--GDIPNVYSWWAQRSKTSKINNSGWRIDYWLTSNRIADKVTKSEMIDSGTR----- 263
Query: 206 GSDHCPVSLEL 216
DH P+ LE+
Sbjct: 264 -QDHTPIVLEI 273
>gi|48477699|ref|YP_023405.1| exodeoxyribonuclease III [Picrophilus torridus DSM 9790]
gi|48430347|gb|AAT43212.1| exodeoxyribonuclease III [Picrophilus torridus DSM 9790]
Length = 250
Score = 92.8 bits (229), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 68/194 (35%), Positives = 95/194 (48%), Gaps = 35/194 (18%)
Query: 28 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWC 86
Y+ +GRV + +++ FY++NTY PN+ + + +D + EF + KPLI
Sbjct: 87 YDSEGRVQILKYDNFYIINTYFPNS--QHGLTRLDYKIDFDNKFLEFCEKLRKEKPLIIT 144
Query: 87 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 146
GD NV+HEEID++ P K++ GFTI ER L G ID Y
Sbjct: 145 GDFNVAHEEIDIARP---------------KDNENNAGFTIQERNWMTEFLNHG-YIDTY 188
Query: 147 RFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEE----LKDRIIACEMQGHGIELE 202
R+ HKE +S+ N K G RIDYFIV+++ +KD II LE
Sbjct: 189 RYFHKEPGHYSWWSYRFNARAKNIG--WRIDYFIVTDDFIKNVKDSII----------LE 236
Query: 203 GFYGSDHCPVSLEL 216
GSDH P+ L L
Sbjct: 237 NVKGSDHAPLELLL 250
>gi|182416804|ref|ZP_02948195.1| exodeoxyribonuclease III [Clostridium butyricum 5521]
gi|237669009|ref|ZP_04528993.1| exodeoxyribonuclease III [Clostridium butyricum E4 str. BoNT E
BL5262]
gi|182379266|gb|EDT76765.1| exodeoxyribonuclease III [Clostridium butyricum 5521]
gi|237657357|gb|EEP54913.1| exodeoxyribonuclease III [Clostridium butyricum E4 str. BoNT E
BL5262]
Length = 254
Score = 92.4 bits (228), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 62/197 (31%), Positives = 104/197 (52%), Gaps = 28/197 (14%)
Query: 23 LSALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGK 81
L +++ +GRVI E++ F+L+N Y PN+ +++ + R W+ + ++ K
Sbjct: 83 LGIEEHDNEGRVITLEYDKFFLVNVYTPNS--QQKLARLEYRMSWEDVFRNYLKDLEKNK 140
Query: 82 PLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGR 141
P+I CGDLNV+H+EID+ +P N+++ GF+ ER + +L G
Sbjct: 141 PVILCGDLNVAHKEIDLKNP------------SSNRKN---AGFSDEERSKMSELLNSG- 184
Query: 142 LIDAYRFLHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIE 200
D +R+ + D++ +S WS + RIDYFIVS+ L D++ ++ IE
Sbjct: 185 FTDTFRYFY--PDIEGVYSWWSYRFNARANNAGWRIDYFIVSQSLNDKLEDAKIHT-SIE 241
Query: 201 LEGFYGSDHCPVSLELS 217
GSDHCPV LE++
Sbjct: 242 -----GSDHCPVELEIN 253
>gi|421491432|ref|ZP_15938798.1| exodeoxyribonuclease III [Streptococcus anginosus SK1138]
gi|400371534|gb|EJP24493.1| exodeoxyribonuclease III [Streptococcus anginosus SK1138]
Length = 275
Score = 92.4 bits (228), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 58/191 (30%), Positives = 90/191 (47%), Gaps = 29/191 (15%)
Query: 29 EPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCG 87
+ +GR+I EFE F++ Y PN G + + R+ WDK+ +++ KP++ G
Sbjct: 109 DAEGRIITLEFEKFFVTQVYTPNAG--DGLKRLEERQIWDKKYADYLTTLDKEKPVLATG 166
Query: 88 DLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYR 147
D NV+H EID++HP N+ PGFT ER F +L G D +R
Sbjct: 167 DYNVAHNEIDLAHPS------------SNRR---SPGFTDEERSGFTNLLNRG-FTDTFR 210
Query: 148 FLHKEKDMDCGFSW--SGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 205
++H D+ +SW + K RIDY++ S + D++ EM G
Sbjct: 211 YIH--GDIPNVYSWWAQRSKTSKINNSGWRIDYWLTSNRIADKVTKSEMIDSGTR----- 263
Query: 206 GSDHCPVSLEL 216
DH P+ LE+
Sbjct: 264 -QDHTPIVLEI 273
>gi|395333468|gb|EJF65845.1| hypothetical protein DICSQDRAFT_77688 [Dichomitus squalens LYAD-421
SS1]
Length = 280
Score = 92.4 bits (228), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 59/195 (30%), Positives = 100/195 (51%), Gaps = 33/195 (16%)
Query: 32 GRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWCGDLN 90
GR++ EFE+ Y++ TY N G + +++W+K + ++ + KP+IW GDLN
Sbjct: 107 GRIVTLEFESCYVIGTYVTNAG--TGLKTLDAKKEWNKHFEVYIRELDKKKPVIWTGDLN 164
Query: 91 VSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQ-PGFTIAERKRFGAILKEG-------RL 142
V+ +D+++P K +W + PG+T AE F +L E +
Sbjct: 165 VAPTALDLANP---------------KTNWNKTPGYTEAETSAFARVLNEDGAEPDAPKF 209
Query: 143 IDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELE 202
+D +R H + FS+ N + +G R+D F+VSE L++++ CE++ E
Sbjct: 210 VDVWRKRHPDLRHYTYFSYRFN--CREKGLGWRLDMFVVSERLEEKVQMCEIRS-----E 262
Query: 203 GFYGSDHCPVSLELS 217
+ SDHCPV LEL+
Sbjct: 263 IYGASDHCPVVLELA 277
>gi|145511051|ref|XP_001441453.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124408703|emb|CAK74056.1| unnamed protein product [Paramecium tetraurelia]
Length = 374
Score = 92.4 bits (228), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 67/196 (34%), Positives = 99/196 (50%), Gaps = 28/196 (14%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIW 85
K++ +GR+I AEFE F L+ Y PN+G K + ++ R ++WD Q ++ + K I
Sbjct: 196 KHDQEGRIITAEFEKFNLVACYVPNSGDKLDRLNY-RTQEWDVDFQNYLDKLKQTKNTII 254
Query: 86 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQ-----PGFTIAERKRFGAILKEG 140
CGDLNVSH EID+++PE NK GQ FT ER F L +G
Sbjct: 255 CGDLNVSHTEIDLANPE------------GNKRSAGQLIIYDQRFTQEERDSFSKFLSKG 302
Query: 141 RLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIE 200
ID +R LH ++ FS N + K RIDYF+V++E +I +++
Sbjct: 303 -WIDTFRHLHPKEIKYSYFSPRFN--SRETNKGWRIDYFVVNQEAVGSVIQSDIKT---- 355
Query: 201 LEGFYGSDHCPVSLEL 216
GSDH P+ ++
Sbjct: 356 --TILGSDHVPIECDI 369
>gi|350565008|ref|ZP_08933806.1| exodeoxyribonuclease III [Peptoniphilus indolicus ATCC 29427]
gi|348664197|gb|EGY80712.1| exodeoxyribonuclease III [Peptoniphilus indolicus ATCC 29427]
Length = 250
Score = 92.4 bits (228), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 59/191 (30%), Positives = 96/191 (50%), Gaps = 26/191 (13%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIW 85
+++ +GRVI EFE +Y + Y PN+ K E + R W+ + ++ + KP++
Sbjct: 84 EHDTEGRVITLEFEDYYFITCYTPNSKRKLERLDY--RVVWEDAFRNYLNELDKNKPIVL 141
Query: 86 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 145
CGDLNV+H EID+++P+ + GF+ ER +F +L G +D
Sbjct: 142 CGDLNVAHNEIDLANPD---------------TNHKSAGFSDEERAKFTELLASG-YVDT 185
Query: 146 YRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 205
+R + ++ + + WS + R RIDYF+VSE DRI ++ +
Sbjct: 186 FRHFYPDRADEYSW-WSNFNKARERNIGWRIDYFVVSERFLDRIEDSKIH------QSVM 238
Query: 206 GSDHCPVSLEL 216
GSDHCPV + L
Sbjct: 239 GSDHCPVEIIL 249
>gi|377809183|ref|YP_005004404.1| exodeoxyribonuclease III [Pediococcus claussenii ATCC BAA-344]
gi|361055924|gb|AEV94728.1| exodeoxyribonuclease III [Pediococcus claussenii ATCC BAA-344]
Length = 251
Score = 92.4 bits (228), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 58/192 (30%), Positives = 96/192 (50%), Gaps = 28/192 (14%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIW 85
+Y+ +GR+I E+ +Y++ Y PN+ + + + R W+ + +V Q KP+I+
Sbjct: 84 EYDTEGRIITLEYANYYVITCYTPNS--QPKLKRLEYRMSWEDAFKNYVDQLKKDKPVIF 141
Query: 86 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 145
CGDLNV+H EID+ +P K + GF+ ER +F +L+ G D
Sbjct: 142 CGDLNVAHNEIDLKNP---------------KTNHKNAGFSDQERAKFTELLQSG-FTDT 185
Query: 146 YRFLHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGF 204
+R H D+ +S WS + RIDYF+ S +L D++ ++
Sbjct: 186 FR--HFYPDLTGIYSWWSYRFNARKNNAGWRIDYFVTSNDLDDKLKDAKIHTE------I 237
Query: 205 YGSDHCPVSLEL 216
+GSDHCPV L++
Sbjct: 238 FGSDHCPVELDI 249
>gi|242219979|ref|XP_002475762.1| predicted protein [Postia placenta Mad-698-R]
gi|220725034|gb|EED79041.1| predicted protein [Postia placenta Mad-698-R]
Length = 415
Score = 92.4 bits (228), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 59/203 (29%), Positives = 101/203 (49%), Gaps = 42/203 (20%)
Query: 32 GRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLN 90
GR++ EF +YL+ TY N G + + + +++W+ +++ + KP+IW GDLN
Sbjct: 233 GRILTLEFSNYYLIGTYVVNAG--QGLKTLEAKKEWNVHFTKYMRELDMRKPVIWTGDLN 290
Query: 91 VSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQ-PGFTIAERKRFGAILK----------- 138
V+ E+D+++P K +W + PG+T E F IL
Sbjct: 291 VAPTELDLANP---------------KTNWNKTPGYTEVETSAFARILNPSSAAASDAAS 335
Query: 139 -----EGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACE 193
G+ +D +R LH + FS+ N + +G R+D F+VSE +++R+ CE
Sbjct: 336 QDDAAPGKFVDVWRKLHPDDRHYTYFSYRFN--CRMKGIGWRLDMFVVSERIEERVKMCE 393
Query: 194 MQGHGIELEGFYGSDHCPVSLEL 216
++ E + SDHCPV+LE+
Sbjct: 394 IRS-----EIYGASDHCPVALEI 411
>gi|375364493|ref|YP_005132532.1| exodeoxyribonuclease III [Bacillus amyloliquefaciens subsp.
plantarum CAU B946]
gi|421729528|ref|ZP_16168658.1| exodeoxyribonuclease III [Bacillus amyloliquefaciens subsp.
plantarum M27]
gi|371570487|emb|CCF07337.1| exodeoxyribonuclease III [Bacillus amyloliquefaciens subsp.
plantarum CAU B946]
gi|407076498|gb|EKE49481.1| exodeoxyribonuclease III [Bacillus amyloliquefaciens subsp.
plantarum M27]
Length = 252
Score = 92.4 bits (228), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 60/190 (31%), Positives = 95/190 (50%), Gaps = 26/190 (13%)
Query: 28 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 86
++ +GRVI EFE +++N Y PN K R +W+ +E++ + KP+I C
Sbjct: 86 HDQEGRVITLEFENLFVVNCYTPNA--KRGLERIDYRLQWEADFKEYLQKLDRKKPVILC 143
Query: 87 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 146
GDLNV+H EID+ +P K + GF+ ER+ F A+L G D++
Sbjct: 144 GDLNVAHREIDLKNP---------------KANRKNAGFSDQEREAFSALLNTG-FTDSF 187
Query: 147 RFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYG 206
R+L+ +++ + WS + + R+DY IVS+ LK RI + G
Sbjct: 188 RYLYPDREGAYSW-WSYRTNAREKNIGWRLDYVIVSDRLKPRISEAAI------CADIMG 240
Query: 207 SDHCPVSLEL 216
SDHCPV + +
Sbjct: 241 SDHCPVEMTV 250
>gi|308175792|ref|YP_003922497.1| apurinic/apyrimidinic endonuclease [Bacillus amyloliquefaciens DSM
7]
gi|384161680|ref|YP_005543753.1| apurinic/apyrimidinic endonuclease [Bacillus amyloliquefaciens
TA208]
gi|384166602|ref|YP_005547981.1| apurinic/apyrimidinic endonuclease [Bacillus amyloliquefaciens LL3]
gi|384170793|ref|YP_005552171.1| 5'3'-exonuclease [Bacillus amyloliquefaciens XH7]
gi|307608656|emb|CBI45027.1| apurinic/apyrimidinic endonuclease [Bacillus amyloliquefaciens DSM
7]
gi|328555768|gb|AEB26260.1| apurinic/apyrimidinic endonuclease [Bacillus amyloliquefaciens
TA208]
gi|328914157|gb|AEB65753.1| apurinic/apyrimidinic endonuclease [Bacillus amyloliquefaciens LL3]
gi|341830072|gb|AEK91323.1| 5'3'-exonuclease [Bacillus amyloliquefaciens XH7]
Length = 252
Score = 92.4 bits (228), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 61/191 (31%), Positives = 94/191 (49%), Gaps = 28/191 (14%)
Query: 28 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWC 86
++ +GRVI EFE +++N Y PN K R +W+ ++++ + KP+I C
Sbjct: 86 HDQEGRVITLEFENVFVVNCYTPNA--KRGLERIDYRLQWEADFKDYLQKLDQKKPVILC 143
Query: 87 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 146
GDLNV+H EID+ +P K + GF+ ER+ F +L G D++
Sbjct: 144 GDLNVAHREIDLKNP---------------KANRKNAGFSDQEREAFSVLLNAG-FTDSF 187
Query: 147 RFLHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 205
R+L+ D + +S WS + + R+DY IVS+ LK RI +
Sbjct: 188 RYLY--PDQEGAYSWWSYRTNAREKNIGWRLDYVIVSDRLKQRITQAAI------CADIM 239
Query: 206 GSDHCPVSLEL 216
GSDHCPV + L
Sbjct: 240 GSDHCPVEMTL 250
>gi|347525140|ref|YP_004831888.1| exodeoxyribonuclease III [Lactobacillus ruminis ATCC 27782]
gi|345284099|gb|AEN77952.1| Exodeoxyribonuclease III [Lactobacillus ruminis ATCC 27782]
Length = 254
Score = 92.4 bits (228), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 67/192 (34%), Positives = 95/192 (49%), Gaps = 24/192 (12%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGKPLIWC 86
+++ +GRVI E+ +FYL+ Y+PN+ K + F R D + KP+I C
Sbjct: 84 EFDHEGRVITLEYASFYLVCCYSPNSQPKLKRLDF-RMGFEDAFLNYLNALKEKKPVIMC 142
Query: 87 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 146
GDLNV+HEEID+ +P K + GF+ ER +L+ G L D +
Sbjct: 143 GDLNVAHEEIDLKNP---------------KTNHKNAGFSNEERSCMTRLLENGYL-DTF 186
Query: 147 RFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYG 206
RF H ++ + WS + RIDYFIVSE LKD + E+ L G
Sbjct: 187 RFFHPDETGIYSW-WSYRFNARKNNAGWRIDYFIVSESLKDSLENAEI------LTDIMG 239
Query: 207 SDHCPVSLELSE 218
SDHCPV LE ++
Sbjct: 240 SDHCPVLLETAD 251
>gi|417986286|ref|ZP_12626858.1| exodeoxyribonuclease III [Lactobacillus casei 32G]
gi|410526479|gb|EKQ01366.1| exodeoxyribonuclease III [Lactobacillus casei 32G]
Length = 252
Score = 92.4 bits (228), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 63/190 (33%), Positives = 91/190 (47%), Gaps = 29/190 (15%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIW 85
+++ +GR+I E+ FYL+ Y PN+G E R++WDK + Q + K PL++
Sbjct: 84 EHDTEGRIITLEYPNFYLMTVYTPNSG--GELKRLDYRQQWDKDFLAYTNQLAAKKPLVY 141
Query: 86 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 145
CGDLNV+H+EID+ + +K + GFT ER F L G ID
Sbjct: 142 CGDLNVAHQEIDLKN---------------DKTNHHNAGFTDEERADFTKQLDSG-FIDT 185
Query: 146 YRFLHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGF 204
+R L+ + +S WS + RIDYF+ S K I ++ L
Sbjct: 186 FRNLYPDT---VTYSWWSYRFHARANNAGWRIDYFVSSRNFKPYIQDAKI------LTEI 236
Query: 205 YGSDHCPVSL 214
GSDHCPV L
Sbjct: 237 MGSDHCPVEL 246
>gi|336452587|ref|YP_004607053.1| exodeoxyribonuclease III [Helicobacter bizzozeronii CIII-1]
gi|335332614|emb|CCB79341.1| exodeoxyribonuclease III [Helicobacter bizzozeronii CIII-1]
Length = 251
Score = 92.4 bits (228), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 61/195 (31%), Positives = 96/195 (49%), Gaps = 26/195 (13%)
Query: 23 LSALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-K 81
+ +++ +GRV+ E+ FYL+N Y PN+ + R KW++ + F+ G K
Sbjct: 81 IGVAQHDLEGRVVTCEYADFYLVNVYVPNS--QRGLLRLDYRLKWEEAFRRFLADLMGHK 138
Query: 82 PLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGR 141
++ CGDLNV+H+EID+ +PE + GF+ ER F +L G
Sbjct: 139 AVVVCGDLNVAHKEIDLKNPE---------------SNHHNAGFSPEERHAFSQLLDLG- 182
Query: 142 LIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIEL 201
LID YR + + + WS + R RIDYF+VS L++++ + H
Sbjct: 183 LIDTYRHFYPNQQGIYTW-WSYMNEARARNIGWRIDYFLVSHTLQEQLKDALIHPH---- 237
Query: 202 EGFYGSDHCPVSLEL 216
GSDHCPV L++
Sbjct: 238 --ILGSDHCPVGLKI 250
>gi|295397847|ref|ZP_06807910.1| exodeoxyribonuclease III [Aerococcus viridans ATCC 11563]
gi|294973892|gb|EFG49656.1| exodeoxyribonuclease III [Aerococcus viridans ATCC 11563]
Length = 275
Score = 92.4 bits (228), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 61/196 (31%), Positives = 91/196 (46%), Gaps = 31/196 (15%)
Query: 24 SALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-P 82
+ + YE GR+I EF FY+ N Y PN G + R+ WD + ++ K P
Sbjct: 106 TTMDYE--GRMITLEFTDFYVTNVYTPNAG--SALARLEDRQVWDVQYANYLADLDAKKP 161
Query: 83 LIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRL 142
+I CGD NV+H EID++HP K + GFT ER F +L G
Sbjct: 162 VIACGDFNVAHTEIDLAHP---------------KNNHFSAGFTDEERAGFTNLLNRG-F 205
Query: 143 IDAYRFLHKEKDMDCGFSWSGNPI--GKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIE 200
D +R +H D++ ++W + K RIDY++VS+ + D++ EM G
Sbjct: 206 TDTFRHIH--GDVEGVYTWWAQRVKTSKINNSGWRIDYWLVSDRIADKVQKSEMLDSGTR 263
Query: 201 LEGFYGSDHCPVSLEL 216
DH P+ LE+
Sbjct: 264 ------QDHTPILLEI 273
>gi|336399679|ref|ZP_08580479.1| exodeoxyribonuclease III Xth [Prevotella multisaccharivorax DSM
17128]
gi|336069415|gb|EGN58049.1| exodeoxyribonuclease III Xth [Prevotella multisaccharivorax DSM
17128]
Length = 267
Score = 92.4 bits (228), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 69/194 (35%), Positives = 96/194 (49%), Gaps = 35/194 (18%)
Query: 31 DGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQ-----EFVLQC--SGKPL 83
+GRVI E FYL+ Y PN+ +E E + + R+ R+Q LQ KP+
Sbjct: 99 EGRVITMEMPEFYLVCVYTPNS--QEAETTGGKPRRLPYRMQWEDDFRAYLQALDQKKPV 156
Query: 84 IWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLI 143
I CGD+NV+HEEID+ +P+ LN GFT ER + +L G
Sbjct: 157 IVCGDMNVAHEEIDIKNPK---TNHLNA------------GFTDEERDKMTTLLDSG-FT 200
Query: 144 DAYRFLHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELE 202
D++R LH + + +S WS + RIDYF+ S+ L+D I G I E
Sbjct: 201 DSFRALHPD---EVTYSWWSYRFRSREHNTGWRIDYFLTSDRLRDHIT-----GASIHTE 252
Query: 203 GFYGSDHCPVSLEL 216
YGSDHCP+ L+L
Sbjct: 253 -IYGSDHCPIELDL 265
>gi|429507371|ref|YP_007188555.1| ExoA protein [Bacillus amyloliquefaciens subsp. plantarum AS43.3]
gi|429488961|gb|AFZ92885.1| ExoA [Bacillus amyloliquefaciens subsp. plantarum AS43.3]
Length = 252
Score = 92.0 bits (227), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 62/191 (32%), Positives = 95/191 (49%), Gaps = 28/191 (14%)
Query: 28 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 86
++ +GRVI EFE +++N Y PN K R +W+ ++++ + KP+I C
Sbjct: 86 HDQEGRVITLEFEHVFVVNCYTPNA--KRGLERIDYRLQWEADFKDYLQKLDRKKPVILC 143
Query: 87 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 146
GDLNV+H EID+ +P K + GF+ ER+ F A+L G D++
Sbjct: 144 GDLNVAHREIDLKNP---------------KANRKNAGFSEQEREAFSALLNAG-FTDSF 187
Query: 147 RFLHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 205
R+L+ D + +S WS + + R+DY IVS+ LK RI +
Sbjct: 188 RYLY--PDQEGAYSWWSYRTNAREKNIGWRLDYVIVSDRLKQRISQAAI------CADIM 239
Query: 206 GSDHCPVSLEL 216
GSDHCPV + L
Sbjct: 240 GSDHCPVEMTL 250
>gi|373115658|ref|ZP_09529827.1| exodeoxyribonuclease III (xth) [Lachnospiraceae bacterium
7_1_58FAA]
gi|371670180|gb|EHO35266.1| exodeoxyribonuclease III (xth) [Lachnospiraceae bacterium
7_1_58FAA]
Length = 250
Score = 92.0 bits (227), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 64/194 (32%), Positives = 97/194 (50%), Gaps = 34/194 (17%)
Query: 28 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIWC 86
++ +GRVI AEF+ F+L+ Y PN + E R +W+ + ++++ K P++ C
Sbjct: 85 HDHEGRVITAEFDGFFLVCCYTPNA--QNELARIDYRMQWEDDFRAYLMELDKKKPVVLC 142
Query: 87 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 146
GDLNV+HEEID+ +P K + G GF+ ER + +L G D +
Sbjct: 143 GDLNVAHEEIDLKNP---------------KSNRGSAGFSDQERGKMTELLSSG-FTDTF 186
Query: 147 RFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEEL----KDRIIACEMQGHGIELE 202
R L+ ++ + WS + RIDYFIVS+ L +D II E++
Sbjct: 187 RALYPDRTGAYTW-WSYRFNARKNNAGWRIDYFIVSDRLLPRVRDNIIHAEVE------- 238
Query: 203 GFYGSDHCPVSLEL 216
GSDHCPV L L
Sbjct: 239 ---GSDHCPVELVL 249
>gi|408411522|ref|ZP_11182670.1| Exodeoxyribonuclease III [Lactobacillus sp. 66c]
gi|409350015|ref|ZP_11233286.1| Exodeoxyribonuclease III [Lactobacillus equicursoris CIP 110162]
gi|407874302|emb|CCK84476.1| Exodeoxyribonuclease III [Lactobacillus sp. 66c]
gi|407877730|emb|CCK85344.1| Exodeoxyribonuclease III [Lactobacillus equicursoris CIP 110162]
Length = 275
Score = 92.0 bits (227), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 60/192 (31%), Positives = 94/192 (48%), Gaps = 29/192 (15%)
Query: 29 EPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCG 87
+ +GR+I EF FY+ Y PN+G R++WD+ + ++ + KP++ G
Sbjct: 109 DAEGRMITLEFPDFYVTEVYTPNSG--TGLKRLDERQEWDQCYRTYLEKLDAQKPVLASG 166
Query: 88 DLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYR 147
D N +++EID+ HPE + GFT ER FG +L G +D +R
Sbjct: 167 DFNAAYQEIDLKHPE---------------NNHHSAGFTDEERAGFGQLLGSG-FVDTFR 210
Query: 148 FLHKEKDMDCGFSWSGNPI--GKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 205
LH + ++ +SW + K RIDY++VSE L D++ EM G
Sbjct: 211 LLHGQ--VEGVYSWWAQRVRSAKANNSGWRIDYWLVSERLADKVTKSEMIDTGER----- 263
Query: 206 GSDHCPVSLELS 217
+DHCP+ LE+S
Sbjct: 264 -ADHCPILLEVS 274
>gi|45358575|ref|NP_988132.1| exodeoxyribonuclease III Xth [Methanococcus maripaludis S2]
gi|44921333|emb|CAF30568.1| exonuclease III [Methanococcus maripaludis S2]
Length = 249
Score = 92.0 bits (227), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 59/185 (31%), Positives = 94/185 (50%), Gaps = 27/185 (14%)
Query: 31 DGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWCGDL 89
+GRVI EF+ +YL+N Y PN+ + + R+KWD+ ++ + KP+++CGDL
Sbjct: 88 EGRVITLEFDEYYLVNVYTPNS--QRGLTRLEYRQKWDEDFLSYIKTLETKKPVVFCGDL 145
Query: 90 NVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFL 149
NV+H+EID+ +P K + GFT ER F I+ G +D +R
Sbjct: 146 NVAHKEIDLKNP---------------KTNVKNAGFTPEERNGFDNIVNSG-FLDTFREF 189
Query: 150 HKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDH 209
+ E D +S+ N + R RIDYF +S+ L++ + + + GSDH
Sbjct: 190 NNEPDNYSWWSYRFN--ARARNIGWRIDYFCISKSLRNNLKDAYI------MPEVMGSDH 241
Query: 210 CPVSL 214
CPV +
Sbjct: 242 CPVGI 246
>gi|332522573|ref|ZP_08398825.1| exodeoxyribonuclease III [Streptococcus porcinus str. Jelinkova
176]
gi|332313837|gb|EGJ26822.1| exodeoxyribonuclease III [Streptococcus porcinus str. Jelinkova
176]
Length = 275
Score = 92.0 bits (227), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 61/214 (28%), Positives = 99/214 (46%), Gaps = 29/214 (13%)
Query: 6 CLFYVCLCNNSSVFHFLLSALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRR 65
Y N F + + + +GR+I EF+ F++ Y PN G + R+
Sbjct: 86 MFLYKQTLNPVVTFPEIGAPTTMDSEGRIITLEFDDFFVTQVYTPNAG--DGLRRLADRQ 143
Query: 66 KWDKRIQEFVLQCSG-KPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPG 124
+WD + E++ Q KP++ GD NV+H+EID+++P N+ PG
Sbjct: 144 EWDIKYAEYLAQLDAQKPVLATGDYNVAHKEIDLANPA------------SNRR---SPG 188
Query: 125 FTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSW--SGNPIGKYRGKRMRIDYFIVS 182
FT ER F A+L++G D +R LH D+ ++W + K RIDY++ S
Sbjct: 189 FTDEERAGFTALLEKG-FTDTFRHLH--GDIPNVYTWWAQRSKTSKMNNTGWRIDYWLTS 245
Query: 183 EELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 216
+ D+++ EM G DH P+ LE+
Sbjct: 246 NRVADKVLKSEMLDSGAR------QDHTPILLEI 273
>gi|116333326|ref|YP_794853.1| exonuclease III [Lactobacillus brevis ATCC 367]
gi|116098673|gb|ABJ63822.1| Exonuclease III [Lactobacillus brevis ATCC 367]
Length = 254
Score = 92.0 bits (227), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 62/200 (31%), Positives = 100/200 (50%), Gaps = 28/200 (14%)
Query: 23 LSALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-K 81
+ A +++ +GR I E+ FY+L Y PN+G + F R W+ F+ + K
Sbjct: 80 IDAPEFDHEGRAITLEYPDFYVLTCYTPNSGSGLKRLDF--RLGWEHAFLTFIQKLDAQK 137
Query: 82 PLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGR 141
P+I+CGDLNV+H EID+ +P K + GFT ER + A+L G
Sbjct: 138 PVIFCGDLNVAHTEIDLKNP---------------KTNHHNAGFTDEERAKMTALLAAG- 181
Query: 142 LIDAYRFLHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIE 200
D +R+ + D+ +S WS + RIDYFI S+ L++ + ++
Sbjct: 182 YTDTFRYFN--PDVTERYSWWSYRFHARDNNAGWRIDYFITSQRLQNHLQDAKI------ 233
Query: 201 LEGFYGSDHCPVSLELSEAS 220
L+ GSDHCPV L++++ +
Sbjct: 234 LDQIMGSDHCPVELDVTDLT 253
>gi|366086404|ref|ZP_09452889.1| exodeoxyribonuclease III [Lactobacillus zeae KCTC 3804]
Length = 252
Score = 92.0 bits (227), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 62/190 (32%), Positives = 91/190 (47%), Gaps = 29/190 (15%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIW 85
+++ +GR+I E+ FYL+ Y PN+G E R++WDK + + Q + KPL++
Sbjct: 84 EHDKEGRIITLEYPKFYLMTVYTPNSG--GELKRLDYRQQWDKDFRAYTNQLAEKKPLVY 141
Query: 86 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 145
CGDLNV+HE ID+ + +K + GFT ER F LK G ID
Sbjct: 142 CGDLNVAHEPIDLKN---------------DKTNHHNAGFTDEERADFTKQLKSG-FIDT 185
Query: 146 YRFLHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGF 204
+R L+ +S WS + RIDYF+ S + + ++ L
Sbjct: 186 FRHLYPNT---VTYSWWSYRFHARANNAGWRIDYFVASSNFQPYVKDAKI------LTDV 236
Query: 205 YGSDHCPVSL 214
GSDHCPV L
Sbjct: 237 MGSDHCPVEL 246
>gi|325679379|ref|ZP_08158964.1| exodeoxyribonuclease III [Ruminococcus albus 8]
gi|324108976|gb|EGC03207.1| exodeoxyribonuclease III [Ruminococcus albus 8]
Length = 250
Score = 92.0 bits (227), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 62/188 (32%), Positives = 93/188 (49%), Gaps = 26/188 (13%)
Query: 31 DGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGDL 89
+GRVI E++ FY + Y PN + E R +++ ++ ++ KP+I+CGDL
Sbjct: 87 EGRVITCEYDDFYFVCCYVPNA--QNELKRIDYRMEFEDDMRAYLCGLDKLKPVIYCGDL 144
Query: 90 NVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFL 149
NV+HEEID+ +P K + G GF+ ER +F +L G D +R L
Sbjct: 145 NVAHEEIDLKNP---------------KSNVGNAGFSDQERGKFTELLAAG-FADTFRRL 188
Query: 150 HKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDH 209
+ E + WS + RIDYF+VSE L D++ G L GSDH
Sbjct: 189 YPETTGVYSW-WSYRFNARKNNAGWRIDYFVVSERLMDKV------GDSKILTDVMGSDH 241
Query: 210 CPVSLELS 217
CPV L+++
Sbjct: 242 CPVQLDIT 249
>gi|297583616|ref|YP_003699396.1| exodeoxyribonuclease III [Bacillus selenitireducens MLS10]
gi|297142073|gb|ADH98830.1| exodeoxyribonuclease III [Bacillus selenitireducens MLS10]
Length = 254
Score = 92.0 bits (227), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 57/192 (29%), Positives = 98/192 (51%), Gaps = 26/192 (13%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIW 85
+ + +GR++ EF +F+L+N Y PN+ + + R +W+ ++ + KP+I
Sbjct: 85 RQQSEGRILTLEFASFFLVNVYTPNS--QRDLARLHERLQWEDAFYAYLQELENEKPVIV 142
Query: 86 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 145
CGD+NV+HEEID+ + K + G GFT ER + + E LID+
Sbjct: 143 CGDMNVAHEEIDLRNA---------------KSNRGNSGFTTEERAKMTRLQSEW-LIDS 186
Query: 146 YRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 205
YR+ + +++ + WS + R RIDYF+VS++LK + + +
Sbjct: 187 YRYYYPDQEGAYTW-WSYMKTVRERNIGWRIDYFLVSDKLKSAMNDVSIYSDVL------ 239
Query: 206 GSDHCPVSLELS 217
GSDHCP+ L ++
Sbjct: 240 GSDHCPIGLTMA 251
>gi|81428949|ref|YP_395949.1| exodeoxyribonuclease III [Lactobacillus sakei subsp. sakei 23K]
gi|78610591|emb|CAI55642.1| Exodeoxyribonuclease III [Lactobacillus sakei subsp. sakei 23K]
Length = 254
Score = 92.0 bits (227), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 58/196 (29%), Positives = 99/196 (50%), Gaps = 32/196 (16%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQR---RRKWDKRIQEFVLQC-SGKP 82
+++ +GRVI E+ F+L+ Y PN+ +N +R R W+ + +V Q + KP
Sbjct: 84 EHDHEGRVITLEYPQFFLITCYTPNS-----QNQLKRLDYRMTWENAFRAYVQQLGTQKP 138
Query: 83 LIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRL 142
+I+CGDLNV+HE ID+ + ++ + GF+ ER + +L+ G
Sbjct: 139 VIFCGDLNVAHEAIDLKN---------------DRTNHKSAGFSDEERVQMTTLLQSG-F 182
Query: 143 IDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELE 202
D +R+ + ++ D WS + RIDYFI S+EL+ +++ ++
Sbjct: 183 TDTFRYFYPDQ-TDIYSWWSYRFHARDNNAGWRIDYFITSDELQPKLMDAKIHTE----- 236
Query: 203 GFYGSDHCPVSLELSE 218
YGSDHCPV L+ +
Sbjct: 237 -IYGSDHCPVELDTQD 251
>gi|15922225|ref|NP_377894.1| exodeoxyribonuclease [Sulfolobus tokodaii str. 7]
gi|199436390|dbj|BAG70946.1| thermostable exonuclease III [Sulfolobus sp. Tu B-1]
gi|342306599|dbj|BAK54688.1| endonuclease [Sulfolobus tokodaii str. 7]
Length = 241
Score = 91.7 bits (226), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 67/195 (34%), Positives = 98/195 (50%), Gaps = 34/195 (17%)
Query: 23 LSALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GK 81
L+ +++ +GR + E E FYL+N Y P G + + + +D +I+EF+ Q K
Sbjct: 78 LNVKEFDEEGRTVTVELEKFYLINAYFPRAG--DGLSRLDFKISFDNKIEEFMDQLRRTK 135
Query: 82 PLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGR 141
P+I CGD N E D S D +PG + ER+ ILK+G
Sbjct: 136 PVIICGDFNAVVERRDSSF-----------------WDENEPGLSPKEREWMNHILKKG- 177
Query: 142 LIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIEL 201
IDAYRF++ K +SW +++ K MRIDY +VSEELKD+I C++
Sbjct: 178 YIDAYRFINPTK---IEYSWRSY---RFKWKAMRIDYCLVSEELKDKIRDCKILNVS--- 228
Query: 202 EGFYGSDHCPVSLEL 216
GSDH P+ LE+
Sbjct: 229 ----GSDHYPILLEI 239
>gi|392531481|ref|ZP_10278618.1| exodeoxyribonuclease III [Carnobacterium maltaromaticum ATCC 35586]
Length = 251
Score = 91.7 bits (226), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 61/197 (30%), Positives = 99/197 (50%), Gaps = 28/197 (14%)
Query: 23 LSALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-K 81
L +++ +GRVI + +Y++ Y PN+ + E R W++ ++ Q K
Sbjct: 80 LGKEEHDQEGRVITLSYPDYYVVTCYTPNS--QNELKRLNYRMTWEEDFLAYLNQLDAEK 137
Query: 82 PLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGR 141
P+I CGDLNV+HE ID+ + K + GFT ER +F L+ G
Sbjct: 138 PVIVCGDLNVAHENIDIKNW---------------KTNRKNAGFTDEERGKFTEFLENG- 181
Query: 142 LIDAYRFLHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIE 200
ID +R+ + E ++ +S WS + RIDYFIVSE L++++++ +
Sbjct: 182 YIDTFRYFYPE--LEGAYSWWSYRFNARANNAGWRIDYFIVSERLQEKLVSAAI------ 233
Query: 201 LEGFYGSDHCPVSLELS 217
L GSDHCPV L+++
Sbjct: 234 LNEVVGSDHCPVELQIN 250
>gi|225569150|ref|ZP_03778175.1| hypothetical protein CLOHYLEM_05230 [Clostridium hylemonae DSM
15053]
gi|225161949|gb|EEG74568.1| hypothetical protein CLOHYLEM_05230 [Clostridium hylemonae DSM
15053]
Length = 250
Score = 91.7 bits (226), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 61/191 (31%), Positives = 97/191 (50%), Gaps = 26/191 (13%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIW 85
+++ +GRVI EFE FY + Y PN+ + E R +W+ ++ + KP+I+
Sbjct: 84 EHDKEGRVITLEFEEFYFVTVYTPNS--QSELARLSYRMEWEDAFLAYLKKLEEKKPVIF 141
Query: 86 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 145
CGDLNV+ EEID+ +P K + GFT ER++F I G +D
Sbjct: 142 CGDLNVAAEEIDLKNP---------------KTNRKNAGFTDEEREKFRKIKASG-FVDT 185
Query: 146 YRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 205
+R+ + +++ + WS + + RIDYF VS+ LK+R+ + +
Sbjct: 186 FRYFYPDEEGIYSW-WSYRFRAREKNAGWRIDYFCVSQSLKERLEDARIHTDVM------ 238
Query: 206 GSDHCPVSLEL 216
GSDHCPV L+L
Sbjct: 239 GSDHCPVELDL 249
>gi|300767631|ref|ZP_07077541.1| exodeoxyribonuclease III [Lactobacillus plantarum subsp. plantarum
ATCC 14917]
gi|300494616|gb|EFK29774.1| exodeoxyribonuclease III [Lactobacillus plantarum subsp. plantarum
ATCC 14917]
Length = 265
Score = 91.7 bits (226), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 58/191 (30%), Positives = 93/191 (48%), Gaps = 26/191 (13%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIW 85
+++ +GRVI E+ +Y+L Y PN+G E R++W+ ++ S KPLI+
Sbjct: 95 EFDDEGRVITLEYADYYVLTCYTPNSG--GELKRLDYRQQWEDAFLTYINSLSANKPLIF 152
Query: 86 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 145
CGDLNV+HE ID+ + + + GFT ER +F +L G
Sbjct: 153 CGDLNVAHENIDLKNW---------------RSNHHSAGFTDEERTKFDRLLAAGYTDTF 197
Query: 146 YRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 205
F + D+ +S+ G+ G RIDYFI S++L +++ + +
Sbjct: 198 RHFYPDQTDIYSWWSYRGHARDNNSG--WRIDYFITSQQLDSQLLNARIHNE------IF 249
Query: 206 GSDHCPVSLEL 216
GSDHCPV L++
Sbjct: 250 GSDHCPVELDI 260
>gi|308179822|ref|YP_003923950.1| exodeoxyribonuclease III [Lactobacillus plantarum subsp. plantarum
ST-III]
gi|308045313|gb|ADN97856.1| exodeoxyribonuclease III [Lactobacillus plantarum subsp. plantarum
ST-III]
Length = 254
Score = 91.7 bits (226), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 60/193 (31%), Positives = 93/193 (48%), Gaps = 30/193 (15%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIW 85
+++ +GRVI E+ +Y+L Y PN+G E R++W+ ++ S KPLI+
Sbjct: 84 EFDDEGRVITLEYADYYVLTCYTPNSG--GELKRLDYRQQWEDAFLTYINSLSANKPLIF 141
Query: 86 CGDLNVSHEEIDVS--HPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLI 143
CGDLNV+HE ID+ H +A GFT ER +F +L G
Sbjct: 142 CGDLNVAHENIDLKNWHSNHHSA-----------------GFTDEERTKFDRLLAAGYTD 184
Query: 144 DAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEG 203
F + D+ +S+ G+ G RIDYFI S++L +++ +
Sbjct: 185 TFRHFYPDQTDIYSWWSYRGHARDNNSG--WRIDYFITSQQLDSQLLNARIHNE------ 236
Query: 204 FYGSDHCPVSLEL 216
+GSDHCPV L++
Sbjct: 237 IFGSDHCPVELDI 249
>gi|254555843|ref|YP_003062260.1| exodeoxyribonuclease III [Lactobacillus plantarum JDM1]
gi|380031793|ref|YP_004888784.1| exodeoxyribonuclease III [Lactobacillus plantarum WCFS1]
gi|418274434|ref|ZP_12889932.1| exodeoxyribonuclease III [Lactobacillus plantarum subsp. plantarum
NC8]
gi|448820389|ref|YP_007413551.1| Exodeoxyribonuclease III [Lactobacillus plantarum ZJ316]
gi|254044770|gb|ACT61563.1| exodeoxyribonuclease III [Lactobacillus plantarum JDM1]
gi|342241036|emb|CCC78270.1| exodeoxyribonuclease III [Lactobacillus plantarum WCFS1]
gi|376010000|gb|EHS83326.1| exodeoxyribonuclease III [Lactobacillus plantarum subsp. plantarum
NC8]
gi|448273886|gb|AGE38405.1| Exodeoxyribonuclease III [Lactobacillus plantarum ZJ316]
Length = 254
Score = 91.7 bits (226), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 58/191 (30%), Positives = 93/191 (48%), Gaps = 26/191 (13%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIW 85
+++ +GRVI E+ +Y+L Y PN+G E R++W+ ++ S KPLI+
Sbjct: 84 EFDDEGRVITLEYADYYVLTCYTPNSG--GELKRLDYRQQWEDAFLTYINSLSANKPLIF 141
Query: 86 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 145
CGDLNV+HE ID+ + + + GFT ER +F +L G
Sbjct: 142 CGDLNVAHENIDLKNW---------------RSNHHSAGFTDEERTKFDRLLAAGYTDTF 186
Query: 146 YRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 205
F + D+ +S+ G+ G RIDYFI S++L +++ + +
Sbjct: 187 RHFYPDQTDIYSWWSYRGHARDNNSG--WRIDYFITSQQLDSQLLNARIHNE------IF 238
Query: 206 GSDHCPVSLEL 216
GSDHCPV L++
Sbjct: 239 GSDHCPVELDI 249
>gi|450049676|ref|ZP_21839797.1| putative exodeoxyribonuclease III [Streptococcus mutans NFSM1]
gi|449203427|gb|EMC04286.1| putative exodeoxyribonuclease III [Streptococcus mutans NFSM1]
Length = 275
Score = 91.7 bits (226), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 58/189 (30%), Positives = 93/189 (49%), Gaps = 29/189 (15%)
Query: 31 DGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGDL 89
+GR+I EF+ F++ Y PN G + R+ WD++ ++ Q KP++ GD
Sbjct: 111 EGRIITLEFDDFFVTQVYTPNAG--DALKRLDDRQIWDEKYAIYLAQLDKQKPVLATGDY 168
Query: 90 NVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFL 149
NV+H+EID++HP N+ PGFT ER F +L++G D +R++
Sbjct: 169 NVAHKEIDLAHPS------------SNRR---SPGFTDEERAGFTHLLEQG-FTDTFRYI 212
Query: 150 HKEKDMDCGFSW--SGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGS 207
H D+ +SW + K RIDY+++S L D+I+ EM G
Sbjct: 213 H--GDVPNVYSWWAQRSKTSKINNSGWRIDYWLISNRLSDKILKSEMIDSGTR------Q 264
Query: 208 DHCPVSLEL 216
DH P+ L++
Sbjct: 265 DHTPILLKI 273
>gi|414085431|ref|YP_006994142.1| exodeoxyribonuclease III [Carnobacterium maltaromaticum LMA28]
gi|412999018|emb|CCO12827.1| exodeoxyribonuclease III [Carnobacterium maltaromaticum LMA28]
Length = 251
Score = 91.7 bits (226), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 61/197 (30%), Positives = 99/197 (50%), Gaps = 28/197 (14%)
Query: 23 LSALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-K 81
L +++ +GRVI + +Y++ Y PN+ + E R W++ ++ Q K
Sbjct: 80 LGKEEHDQEGRVITLSYPDYYVVTCYTPNS--QNELKRLDYRMTWEEDFLAYLNQLDAEK 137
Query: 82 PLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGR 141
P+I CGDLNV+HE ID+ + K + GFT ER +F L+ G
Sbjct: 138 PVIVCGDLNVAHENIDIKNW---------------KTNRKNAGFTDEERGKFTEFLENG- 181
Query: 142 LIDAYRFLHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIE 200
ID +R+ + E ++ +S WS + RIDYFIVSE L++++++ +
Sbjct: 182 YIDTFRYFYPE--LEGAYSWWSYRFNARANNAGWRIDYFIVSERLQEKLVSAAI------ 233
Query: 201 LEGFYGSDHCPVSLELS 217
L GSDHCPV L+++
Sbjct: 234 LNEVVGSDHCPVELQIN 250
>gi|375089592|ref|ZP_09735918.1| exodeoxyribonuclease III (xth) [Facklamia languida CCUG 37842]
gi|374566990|gb|EHR38224.1| exodeoxyribonuclease III (xth) [Facklamia languida CCUG 37842]
Length = 275
Score = 91.7 bits (226), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 63/193 (32%), Positives = 92/193 (47%), Gaps = 33/193 (17%)
Query: 29 EPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCG 87
+ +GR+I E + +L N Y PN G + + R+ WD + +++ KP+I G
Sbjct: 109 DSEGRIITLELDNCFLTNVYTPNAG--SQLGRLEERQAWDLKYADYLATLDKQKPVIAMG 166
Query: 88 DLNVSHEEIDVSHP--EFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 145
D NV+HEEID++HP F+A GFT ER+ F +L G +D
Sbjct: 167 DFNVAHEEIDLAHPANNHFSA-----------------GFTDEERQGFTHLLSRG-FVDT 208
Query: 146 YRFLHKEKDMDCGFSWSGNPI--GKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEG 203
+R LH ++ ++W + K RIDYF+VSE LKD I EM G
Sbjct: 209 FRHLHGS--VEGVYTWWAQRVRTSKINNSGWRIDYFLVSERLKDAIKRSEMIDSGDR--- 263
Query: 204 FYGSDHCPVSLEL 216
DH P+ LE+
Sbjct: 264 ---QDHTPILLEI 273
>gi|239631265|ref|ZP_04674296.1| exonuclease III [Lactobacillus paracasei subsp. paracasei 8700:2]
gi|239525730|gb|EEQ64731.1| exonuclease III [Lactobacillus paracasei subsp. paracasei 8700:2]
Length = 252
Score = 91.7 bits (226), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 62/190 (32%), Positives = 91/190 (47%), Gaps = 29/190 (15%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIW 85
+++ +GR+I E+ FYL+ Y PN+G E R++WDK + Q + K PL++
Sbjct: 84 EHDTEGRIITLEYPNFYLMTVYTPNSG--GELKRLDYRQQWDKDFLAYTNQLAAKKPLVY 141
Query: 86 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 145
CGDLNV+H+EID+ + +K + FT ER F L G ID
Sbjct: 142 CGDLNVAHQEIDLKN---------------DKTNHHNASFTDEERADFTKQLDSG-FIDT 185
Query: 146 YRFLHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGF 204
+R L+ + +S WS + RIDYF+ S + K I ++ L
Sbjct: 186 FRNLYPDT---VTYSWWSYRFHARANNAGWRIDYFVSSRDFKPYIQDAKI------LTDI 236
Query: 205 YGSDHCPVSL 214
GSDHCPV L
Sbjct: 237 MGSDHCPVEL 246
>gi|288929660|ref|ZP_06423504.1| exodeoxyribonuclease III [Prevotella sp. oral taxon 317 str. F0108]
gi|288329165|gb|EFC67752.1| exodeoxyribonuclease III [Prevotella sp. oral taxon 317 str. F0108]
Length = 249
Score = 91.3 bits (225), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 61/192 (31%), Positives = 95/192 (49%), Gaps = 29/192 (15%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIW 85
+++ +GRVI E TF+L+ Y PN+ +EE R +W+ Q ++ KP+I
Sbjct: 84 QHDHEGRVITLEMPTFFLVTVYTPNS--QEELRRLDYRMQWEDDFQAYLHNLDKCKPVIV 141
Query: 86 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 145
CGD+NV+H+EID+ +P K + GFT ER++ +L G D
Sbjct: 142 CGDMNVAHQEIDLKNP---------------KTNRRNAGFTDEERQKMTQLLDAG-FTDT 185
Query: 146 YRFLHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGF 204
+R+ + E + +S WS + R RIDYF+VS L+ ++ ++
Sbjct: 186 FRWKYPE---EVTYSWWSYRFKARERNTGWRIDYFLVSNRLQAEVLDAKIH------TDI 236
Query: 205 YGSDHCPVSLEL 216
GSDHCPV L L
Sbjct: 237 LGSDHCPVELLL 248
>gi|392947967|ref|ZP_10313585.1| Exodeoxyribonuclease III [Lactobacillus pentosus KCA1]
gi|392436819|gb|EIW14725.1| Exodeoxyribonuclease III [Lactobacillus pentosus KCA1]
Length = 254
Score = 91.3 bits (225), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 59/191 (30%), Positives = 93/191 (48%), Gaps = 26/191 (13%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIW 85
+++ +GRVI E+ +Y+L Y PN+G E R+ W+ ++ S KPLI+
Sbjct: 84 EFDTEGRVITLEYADYYVLTCYTPNSG--GELKRLDYRQHWEDAFLTYINSLSANKPLIF 141
Query: 86 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 145
CGDLNV+HE ID+ + + + GFT ER +F +L G
Sbjct: 142 CGDLNVAHENIDLKNW---------------RSNHHSAGFTDEERGKFDRLLANGYTDTF 186
Query: 146 YRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 205
F + D+ +S+ G+ G RIDYFI S++L +++ + L +
Sbjct: 187 RHFYPDQTDIYSWWSYRGHARDNNSG--WRIDYFITSQQLDGQLLNARI------LNDVF 238
Query: 206 GSDHCPVSLEL 216
GSDHCPV L++
Sbjct: 239 GSDHCPVELDI 249
>gi|149200232|ref|ZP_01877254.1| exodeoxyribonuclease (ExoA) [Lentisphaera araneosa HTCC2155]
gi|149136674|gb|EDM25105.1| exodeoxyribonuclease (ExoA) [Lentisphaera araneosa HTCC2155]
Length = 258
Score = 91.3 bits (225), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 62/198 (31%), Positives = 97/198 (48%), Gaps = 27/198 (13%)
Query: 23 LSALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKW-DKRIQEFVLQCSGK 81
L +++ +GRVI+AE+ FYL Y PN + E R ++ D I++ + S K
Sbjct: 85 LGIEEFDREGRVIIAEYSDFYLFGVYFPNA--QAELKRIDYRLEFGDALIEQLKEKYSDK 142
Query: 82 PLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGR 141
+ CGD NV+H+ ID+ +P K + PG++I ER L G
Sbjct: 143 ACVLCGDFNVAHKAIDLKNP---------------KANEKNPGYSIQERNWMDKFLAAGH 187
Query: 142 LIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIEL 201
+D +R ++ D +S+ G + R RIDYF VSE +DR++ + +
Sbjct: 188 -VDTFRMFNQNPDEYSWWSYRGG--ARSRNVGWRIDYFCVSESARDRVLDAGI------M 238
Query: 202 EGFYGSDHCPVSLELSEA 219
+ GSDHCPVS+EL +
Sbjct: 239 QEVLGSDHCPVSIELESS 256
>gi|452857678|ref|YP_007499361.1| apurinic/apyrimidinic endonuclease [Bacillus amyloliquefaciens
subsp. plantarum UCMB5036]
gi|452081938|emb|CCP23712.1| apurinic/apyrimidinic endonuclease [Bacillus amyloliquefaciens
subsp. plantarum UCMB5036]
Length = 252
Score = 91.3 bits (225), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 59/190 (31%), Positives = 95/190 (50%), Gaps = 26/190 (13%)
Query: 28 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 86
++ +GRVI EFE +++N Y PN K R +W+ ++++ + KP+I C
Sbjct: 86 HDQEGRVITLEFENVFVVNCYTPNA--KRGLERIDYRLQWEADFKDYLQKLDRKKPVILC 143
Query: 87 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 146
GDLNV+H EID+ +P K + GF+ ER+ F A+L G D++
Sbjct: 144 GDLNVAHREIDLKNP---------------KANRKNAGFSEQEREAFSALLNAG-FTDSF 187
Query: 147 RFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYG 206
R+L+ +++ + WS + + R+DY IVS+ LK RI + G
Sbjct: 188 RYLYPDREGAYSW-WSYRTNAREKNIGWRLDYVIVSDRLKQRISQAAI------CADIMG 240
Query: 207 SDHCPVSLEL 216
SDHCPV + +
Sbjct: 241 SDHCPVEMTV 250
>gi|429205564|ref|ZP_19196836.1| exodeoxyribonuclease A [Lactobacillus saerimneri 30a]
gi|428146175|gb|EKW98419.1| exodeoxyribonuclease A [Lactobacillus saerimneri 30a]
Length = 275
Score = 91.3 bits (225), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 59/191 (30%), Positives = 91/191 (47%), Gaps = 29/191 (15%)
Query: 31 DGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWCGDL 89
+GR+I EF FY+ Y PN G + R+ WD++ ++ + KP++ GD
Sbjct: 111 EGRIITLEFANFYVTEVYTPNAG--DGLKRLTERQGWDQKYAAYLHELDQKKPVLASGDF 168
Query: 90 NVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFL 149
NV+H EID++HPE + GFT ER F +L G D++R +
Sbjct: 169 NVAHHEIDLAHPE---------------NNHRSAGFTDEERAGFTNLLSYG-FTDSFRHV 212
Query: 150 HKEKDMDCGFSWSGNPI--GKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGS 207
H D+ +SW + K RIDY++VSE + D+++ EM G
Sbjct: 213 H--GDVTGVYSWWAQRVRTSKANNSGWRIDYWLVSERMVDQVVRSEMIATGDR------R 264
Query: 208 DHCPVSLELSE 218
DHCP+ LE+ +
Sbjct: 265 DHCPILLEIKD 275
>gi|399215902|emb|CCF72590.1| unnamed protein product [Babesia microti strain RI]
Length = 459
Score = 91.3 bits (225), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 72/209 (34%), Positives = 102/209 (48%), Gaps = 30/209 (14%)
Query: 31 DGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG--KPLIWCGD 88
+GRV++ EF++FYL++ P NGW E S ++R+KWD + F L+ S K +I G+
Sbjct: 250 EGRVVIIEFDSFYLMSLITPGNGWITE--SIKQRKKWDLELTTF-LKASKYIKAVIMVGN 306
Query: 89 LNVSHEEIDVSHPEFFAAAKL-NGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYR 147
LN S E+IDVS+P AA KL V +E G PG +R F LK G L D YR
Sbjct: 307 LNCSPEDIDVSNP---AALKLEKTAVLHEEEQHGYPGTREVDRNGFEETLKAGDLWDVYR 363
Query: 148 FLH------KEKDMDCGFSWSGNPIGKYRGK--------------RMRIDYFIVSEELKD 187
F++ E D + S + NP G +R ++S +
Sbjct: 364 FMNPVEVEESESDSNALASTAKNPKYTSIGTGAIYLVQTGDKCKCAVRTTLALMSTKFLR 423
Query: 188 RIIACEMQGHGIELEGFYGSDHCPVSLEL 216
I +CE+ G +L+ F G H PV L L
Sbjct: 424 NIKSCEILGTMADLKPF-GWRHLPVGLTL 451
>gi|365843219|ref|ZP_09384168.1| exodeoxyribonuclease III [Flavonifractor plautii ATCC 29863]
gi|364573045|gb|EHM50567.1| exodeoxyribonuclease III [Flavonifractor plautii ATCC 29863]
Length = 250
Score = 91.3 bits (225), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 63/194 (32%), Positives = 97/194 (50%), Gaps = 34/194 (17%)
Query: 28 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIWC 86
++ +GRVI AEF+ F+L+ Y PN + E R +W+ + ++++ K P++ C
Sbjct: 85 HDHEGRVITAEFDGFFLVCCYTPNA--QNELARIDYRMQWEDDFRAYLMELDKKKPVVLC 142
Query: 87 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 146
GDLNV+HEEID+ +P + + G GF+ ER + +L G D +
Sbjct: 143 GDLNVAHEEIDLKNP---------------RSNRGNAGFSDQERGKMTELLSSG-FTDTF 186
Query: 147 RFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEEL----KDRIIACEMQGHGIELE 202
R L+ ++ + WS + RIDYFIVS+ L +D II E++
Sbjct: 187 RALYPDRTGAYTW-WSYRFNARKNNAGWRIDYFIVSDRLLPRVRDNIIHAEVE------- 238
Query: 203 GFYGSDHCPVSLEL 216
GSDHCPV L L
Sbjct: 239 ---GSDHCPVELVL 249
>gi|281206753|gb|EFA80938.1| hypothetical protein PPL_06173 [Polysphondylium pallidum PN500]
Length = 2081
Score = 91.3 bits (225), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 54/159 (33%), Positives = 86/159 (54%), Gaps = 21/159 (13%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQ---RRRKWDKRIQEFVLQCS-GKP 82
K++ +GR+I AE+E FYL+NTY PN+G + + R ++WD + +++ + + KP
Sbjct: 1344 KHDKEGRIITAEYEKFYLVNTYVPNSGVDRKTPLARLDYRTKEWDVDLFKYMHELNKKKP 1403
Query: 83 LIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRL 142
+IW GDLNV+H+EID+ +P K + GFT+ ER F L+ G
Sbjct: 1404 VIWTGDLNVAHKEIDLKNP---------------KGNVRTAGFTVEERTSFSGFLESG-F 1447
Query: 143 IDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIV 181
+D +R + +K+ F WS + R+DYFIV
Sbjct: 1448 VDTFRHFNPKKEFQYTF-WSYMRNSRASNAGWRLDYFIV 1485
>gi|121222076|gb|ABM47607.1| APEX1 [Saguinus labiatus]
Length = 158
Score = 91.3 bits (225), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 58/181 (32%), Positives = 95/181 (52%), Gaps = 25/181 (13%)
Query: 38 EFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQ-CSGKPLIWCGDLNVSHEEI 96
EF++F L+ Y PN G + R++WD+ ++F+ S KPL+ CGDLNV+HEEI
Sbjct: 1 EFDSFVLVTAYVPNAG--RGLVRLEYRQRWDEAFRKFLKGLASRKPLVLCGDLNVAHEEI 58
Query: 97 DVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMD 156
D+ +P+ NK++ GFT ER+ FG +L+ L D++R L+
Sbjct: 59 DLRNPK------------GNKKN---AGFTPQERQGFGELLQAVPLADSFRHLYPNTAYA 103
Query: 157 CGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 216
F W+ + + R+DYF++S L + +++ + GSDHCP++L L
Sbjct: 104 YTF-WTYMMNARSKNVGWRLDYFLLSHSLLPALCDSKIRSKAL------GSDHCPITLYL 156
Query: 217 S 217
+
Sbjct: 157 A 157
>gi|300813916|ref|ZP_07094220.1| exodeoxyribonuclease III [Peptoniphilus sp. oral taxon 836 str.
F0141]
gi|300511979|gb|EFK39175.1| exodeoxyribonuclease III [Peptoniphilus sp. oral taxon 836 str.
F0141]
Length = 275
Score = 91.3 bits (225), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 60/191 (31%), Positives = 93/191 (48%), Gaps = 33/191 (17%)
Query: 31 DGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDL 89
+GR++ EF+ FY Y PN G + R+ WDK+ E+ + KPL+ CGD
Sbjct: 111 EGRILTLEFKDFYFSTVYTPNAG--DGLKRLSDRQVWDKKYLEYCQELDKNKPLVLCGDF 168
Query: 90 NVSHEEIDVSHP--EFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYR 147
NV+H+EID+++P F+A GFT ER F +L +G +D +R
Sbjct: 169 NVAHKEIDLANPNNNHFSA-----------------GFTDEERMGFTNLL-DGGFVDTFR 210
Query: 148 FLHKEKDMDCGFSWSGNPI--GKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 205
++ D++ ++W I K RIDYF+VS+ +KD++ M G
Sbjct: 211 LIN--GDVEGKYTWWAQRIKTSKINNSGWRIDYFLVSQRIKDKVKKSHMMDSGQR----- 263
Query: 206 GSDHCPVSLEL 216
DH P+ LE+
Sbjct: 264 -QDHTPIILEI 273
>gi|373501432|ref|ZP_09591789.1| exodeoxyribonuclease [Prevotella micans F0438]
gi|371949088|gb|EHO66962.1| exodeoxyribonuclease [Prevotella micans F0438]
Length = 250
Score = 91.3 bits (225), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 61/193 (31%), Positives = 98/193 (50%), Gaps = 29/193 (15%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFV--LQCSGKPLI 84
+++ +GR+I E E F+L+ Y PN+ ++ R +W+ ++ L C KP+I
Sbjct: 84 EHDHEGRIITLEMEQFFLVTVYTPNS--QDGLRRLDYRMQWESDFLAYLTSLDCR-KPVI 140
Query: 85 WCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLID 144
CGD+NV+HEEID+ +P+ N+ + GFT ER++ +L G +D
Sbjct: 141 VCGDMNVAHEEIDLKNPQ------------NNRRN---AGFTDEERQKMTTLLASG-FVD 184
Query: 145 AYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGF 204
+R LH E+ +S+ K G RIDYF++SE L +++ +
Sbjct: 185 TFRTLHPEEQKYSWWSYRFKAREKNVG--WRIDYFLISERLVPQLVEATIHAE------I 236
Query: 205 YGSDHCPVSLELS 217
GSDHCPV L L+
Sbjct: 237 MGSDHCPVELVLN 249
>gi|365832959|ref|ZP_09374485.1| exodeoxyribonuclease III (xth) [Coprobacillus sp. 3_3_56FAA]
gi|374627690|ref|ZP_09700093.1| exodeoxyribonuclease III (xth) [Coprobacillus sp. 8_2_54BFAA]
gi|365259792|gb|EHM89775.1| exodeoxyribonuclease III (xth) [Coprobacillus sp. 3_3_56FAA]
gi|373913138|gb|EHQ44980.1| exodeoxyribonuclease III (xth) [Coprobacillus sp. 8_2_54BFAA]
Length = 251
Score = 91.3 bits (225), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 62/191 (32%), Positives = 95/191 (49%), Gaps = 26/191 (13%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIW 85
+++ +GRV+ E+E FYL+N Y PN+ + E R W+ ++ KP+I
Sbjct: 84 EHDHEGRVVTLEYEKFYLVNCYTPNS--QNELKRLDYRMHWEDDFLAYLKSLEKSKPVIL 141
Query: 86 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 145
CGDLNV+++EID+ +P K + GF+ ER + +L+ G ID
Sbjct: 142 CGDLNVAYQEIDLKNP---------------KTNRKNAGFSDEERAKMTNLLENG-FIDT 185
Query: 146 YRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 205
YR+L+ +++ + WS + RIDYFIVS+ LK+ I
Sbjct: 186 YRYLYPDQEGVYSW-WSYRFNARKNNAGWRIDYFIVSDCLKEGI------KEAFICTDIL 238
Query: 206 GSDHCPVSLEL 216
GSDHCPV LE+
Sbjct: 239 GSDHCPVGLEI 249
>gi|300362647|ref|ZP_07058823.1| exodeoxyribonuclease III [Lactobacillus gasseri JV-V03]
gi|300353638|gb|EFJ69510.1| exodeoxyribonuclease III [Lactobacillus gasseri JV-V03]
Length = 275
Score = 91.3 bits (225), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 59/190 (31%), Positives = 93/190 (48%), Gaps = 29/190 (15%)
Query: 31 DGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGDL 89
+GR++ EF+ +Y+ Y PN+G E R+ WD++ E++ + KP+I GD
Sbjct: 111 EGRILTLEFDNYYVTQVYTPNSG--NELKRLDDRQVWDEKYTEYLQKLDQVKPVIASGDY 168
Query: 90 NVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFL 149
NV+H ID+ HPE + GFT ER+ F +LK G D +R +
Sbjct: 169 NVAHTPIDLKHPE---------------NNHHNAGFTDEERQDFDKLLKLG-FTDTFRKI 212
Query: 150 HKEKDMDCGFSWSGNPI--GKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGS 207
H +++ +SW + K RIDY+IVS + ++I EM L+
Sbjct: 213 H--GNVEGVYSWWAQRVRTSKANNSGWRIDYYIVSNRIANQITKSEM------LDTGERK 264
Query: 208 DHCPVSLELS 217
DHCP+ LE++
Sbjct: 265 DHCPIMLEIN 274
>gi|338175515|ref|YP_004652325.1| exodeoxyribonuclease [Parachlamydia acanthamoebae UV-7]
gi|336479873|emb|CCB86471.1| exodeoxyribonuclease [Parachlamydia acanthamoebae UV-7]
Length = 251
Score = 91.3 bits (225), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 65/192 (33%), Positives = 99/192 (51%), Gaps = 28/192 (14%)
Query: 28 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRR-RKWDKRIQEFVLQCS-GKPLIW 85
++ +GR I E+ TF+L+N Y PN+ K + + + R ++WD ++ KP+I+
Sbjct: 85 HDKEGRTITLEYPTFFLVNVYVPNS--KRDLSRLEYRCKQWDVDFLNYLKNIERKKPVIF 142
Query: 86 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 145
CGDLNV+H E D++ P+ A +N + GFT ER F I++ G +D
Sbjct: 143 CGDLNVAHTENDLAFPK----ANINNH-----------GFTAEERAGFDHIVESG-FVDI 186
Query: 146 YRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 205
+R EK WS + R RIDYF++S L+ RI + L+
Sbjct: 187 FREF--EKSSGHYTWWSQFNRCRERDIGWRIDYFLISPSLRSRIKKASI------LKDVM 238
Query: 206 GSDHCPVSLELS 217
GSDHCP++LELS
Sbjct: 239 GSDHCPITLELS 250
>gi|308162466|gb|EFO64862.1| Endonuclease/Exonuclease/phosphatase [Giardia lamblia P15]
Length = 322
Score = 91.3 bits (225), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 59/204 (28%), Positives = 103/204 (50%), Gaps = 37/204 (18%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRK---------WDKRIQEFV-- 75
+++ +GR + +F L++ Y PN+G +F + K ++K I +++
Sbjct: 141 EFDSEGRFLHVSLPSFELIHVYVPNSGRGSNGKTFTSKNKPANLPTRINYEKLISKYIGN 200
Query: 76 LQCSGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGA 135
L +GK +++CGDLNV+H EID+ +P K + PGFT ER F
Sbjct: 201 LVAAGKDVVYCGDLNVAHNEIDLYNP---------------KGNHFNPGFTDEERNAFSK 245
Query: 136 ILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRM--RIDYFIVSEELKDRIIACE 193
+L LIDA+R +H + +SW N G+ R ++ RIDYF+V+ ++ R+ +
Sbjct: 246 LLDGHGLIDAFRAMHPHR---VKYSWFSN-FGRAREQKHGWRIDYFVVTHQIFRRVTTVD 301
Query: 194 MQGHGIELEGFYGSDHCPVSLELS 217
+ ++ Y SDH P+ + L+
Sbjct: 302 V----LDDHNSY-SDHVPIIMTLT 320
>gi|198276716|ref|ZP_03209247.1| hypothetical protein BACPLE_02915 [Bacteroides plebeius DSM 17135]
gi|198270241|gb|EDY94511.1| exodeoxyribonuclease III [Bacteroides plebeius DSM 17135]
Length = 252
Score = 91.3 bits (225), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 57/191 (29%), Positives = 97/191 (50%), Gaps = 26/191 (13%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIW 85
+++ +GRVI E E F+L+ Y PN+ ++ R WD + ++ + KP++
Sbjct: 85 EHDHEGRVITLEMEKFFLVTVYTPNS--QDGLKRLDYRMTWDDDFRAYLQKLDQSKPVLV 142
Query: 86 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 145
CGDLNV+H+EID+ +P+ ++N GFT ER++F +L G ID
Sbjct: 143 CGDLNVAHKEIDLKNPK---TNRMNA------------GFTDQEREKFQLLLDAG-FIDT 186
Query: 146 YRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 205
+R+ + E+ + WS + + RIDYF+ S L D++ ++ +
Sbjct: 187 FRYFYPEQTNIYSW-WSYRFKAREKNAGWRIDYFLASASLADKLKEAKIHTE------IF 239
Query: 206 GSDHCPVSLEL 216
GSDHCPV + +
Sbjct: 240 GSDHCPVEVTV 250
>gi|323340218|ref|ZP_08080482.1| exodeoxyribonuclease III [Lactobacillus ruminis ATCC 25644]
gi|417972789|ref|ZP_12613677.1| exodeoxyribonuclease III [Lactobacillus ruminis ATCC 25644]
gi|323092409|gb|EFZ35017.1| exodeoxyribonuclease III [Lactobacillus ruminis ATCC 25644]
gi|346330854|gb|EGX99085.1| exodeoxyribonuclease III [Lactobacillus ruminis ATCC 25644]
Length = 254
Score = 91.3 bits (225), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 66/193 (34%), Positives = 97/193 (50%), Gaps = 26/193 (13%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIW 85
+++ +GRVI E+ +FYL+ Y+PN+ K + F R ++ ++ KP+I
Sbjct: 84 EFDHEGRVITLEYASFYLVCCYSPNSQPKLKRLDF--RMGFEDAFLNYLNDLKEKKPVIM 141
Query: 86 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 145
CGDLNV+HEEID+ +P K + GF+ ER +L+ G L D
Sbjct: 142 CGDLNVAHEEIDLKNP---------------KTNHRNAGFSNEERSCMTRLLENGYL-DT 185
Query: 146 YRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 205
+RF H ++ + WS + RIDYFIVSE LKD + E+ L
Sbjct: 186 FRFFHPDETGIYSW-WSYRFNARKNNAGWRIDYFIVSESLKDSLENAEI------LTDIM 238
Query: 206 GSDHCPVSLELSE 218
GSDHCPV LE ++
Sbjct: 239 GSDHCPVLLETAD 251
>gi|410918464|ref|XP_003972705.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase-like [Takifugu
rubripes]
Length = 314
Score = 91.3 bits (225), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 58/191 (30%), Positives = 101/191 (52%), Gaps = 26/191 (13%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIW 85
+++ +GRVI AEF +F+L+ Y PN+G R+ WD + ++ + KP++
Sbjct: 147 EHDKEGRVITAEFSSFFLVTVYVPNSG--RGLVRLDYRKTWDVDFRTYLSELDIQKPVVL 204
Query: 86 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 145
CGDLNV+H+EID+ +P+ NK++ GFT ER+ F +L+ G +D+
Sbjct: 205 CGDLNVAHQEIDLKNPK------------GNKKN---AGFTAEEREGFSQLLEAG-FVDS 248
Query: 146 YRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 205
+R L+ E+ F W+ + + R+DYF++S L + +++
Sbjct: 249 FRELYPEQTHAYSF-WTYMMNARDKNVGWRLDYFVLSSSLLPALCDSKIRNQ------VR 301
Query: 206 GSDHCPVSLEL 216
GSDHCP++L +
Sbjct: 302 GSDHCPITLHI 312
>gi|418962582|ref|ZP_13514438.1| putative exodeoxyribonuclease III [Streptococcus anginosus subsp.
whileyi CCUG 39159]
gi|383345371|gb|EID23497.1| putative exodeoxyribonuclease III [Streptococcus anginosus subsp.
whileyi CCUG 39159]
Length = 275
Score = 91.3 bits (225), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 58/191 (30%), Positives = 90/191 (47%), Gaps = 29/191 (15%)
Query: 29 EPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCG 87
+ +GR+I EFE F++ Y PN G + + R+ WDK+ +++ KP++ G
Sbjct: 109 DAEGRIITLEFEKFFVTQVYTPNAG--DGLKRLEERQIWDKKYADYLTALDIEKPVLATG 166
Query: 88 DLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYR 147
D NV+H EID++HP N+ PGFT ER F +L G D +R
Sbjct: 167 DYNVAHNEIDLAHPS------------SNRR---SPGFTDEERSGFTNLLNRG-FTDTFR 210
Query: 148 FLHKEKDMDCGFSW--SGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 205
++H D+ +SW + K RIDY++ S + D++ EM G
Sbjct: 211 YIH--GDIPNVYSWWAQRSKTSKINNSGWRIDYWLTSNRIADKVSKSEMIDSGTR----- 263
Query: 206 GSDHCPVSLEL 216
DH P+ LE+
Sbjct: 264 -QDHTPIVLEI 273
>gi|13540877|ref|NP_110565.1| exonuclease III [Thermoplasma volcanium GSS1]
gi|14324259|dbj|BAB59187.1| exodeoxyribonuclease [Thermoplasma volcanium GSS1]
Length = 252
Score = 91.3 bits (225), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 62/187 (33%), Positives = 91/187 (48%), Gaps = 27/187 (14%)
Query: 31 DGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWCGDL 89
+GR++ EF+ FY +N Y PN+ + + +DK+ + KPLI CGD
Sbjct: 90 EGRILNLEFDNFYFINAYFPNS--QHGLTRLDLKLDFDKKFLGYANDLRKKKPLIICGDF 147
Query: 90 NVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFL 149
NV+HEEID++ P K++ GFTI ER L G +D +R
Sbjct: 148 NVAHEEIDIARP---------------KDNEHNAGFTIEERTWMSQFLSSG-YVDTFRLF 191
Query: 150 HKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDH 209
+ +S+ N K G RIDYF+VS+++KD++ A + LE GSDH
Sbjct: 192 TTDGGHYSWWSYRFNAREKNIG--WRIDYFVVSDDIKDKVKASRI------LENVKGSDH 243
Query: 210 CPVSLEL 216
PV LE+
Sbjct: 244 APVELEI 250
>gi|335998084|ref|ZP_08563996.1| exodeoxyribonuclease III [Lactobacillus ruminis SPM0211]
gi|335348598|gb|EGM50099.1| exodeoxyribonuclease III [Lactobacillus ruminis SPM0211]
Length = 254
Score = 91.3 bits (225), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 66/193 (34%), Positives = 97/193 (50%), Gaps = 26/193 (13%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIW 85
+++ +GRVI E+ +FYL+ Y+PN+ K + F R ++ ++ KP+I
Sbjct: 84 EFDHEGRVITLEYASFYLVCCYSPNSQPKLKRLDF--RMGFEDAFLNYLNDLKEKKPVIM 141
Query: 86 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 145
CGDLNV+HEEID+ +P K + GF+ ER +L+ G L D
Sbjct: 142 CGDLNVAHEEIDLKNP---------------KTNHRNAGFSNEERSCMTRLLENGYL-DT 185
Query: 146 YRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 205
+RF H ++ + WS + RIDYFIVSE LKD + E+ L
Sbjct: 186 FRFFHPDETGIYSW-WSYRFNARKNNAGWRIDYFIVSESLKDSLENAEI------LTDIM 238
Query: 206 GSDHCPVSLELSE 218
GSDHCPV LE ++
Sbjct: 239 GSDHCPVLLETAD 251
>gi|154688190|ref|YP_001423351.1| ExoA [Bacillus amyloliquefaciens FZB42]
gi|154354041|gb|ABS76120.1| ExoA [Bacillus amyloliquefaciens FZB42]
Length = 252
Score = 90.9 bits (224), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 61/191 (31%), Positives = 95/191 (49%), Gaps = 28/191 (14%)
Query: 28 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 86
++ +GRVI EFE +++N Y PN K R +W+ ++++ + KP+I C
Sbjct: 86 HDQEGRVITLEFEHVFVVNCYTPNA--KRGLERIDYRLQWEADFKDYLQKLDRKKPVILC 143
Query: 87 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 146
GDLNV+H EID+ +P K + GF+ ER+ F A+L G D++
Sbjct: 144 GDLNVAHREIDLKNP---------------KANRKNAGFSEQEREAFSALLNAG-FTDSF 187
Query: 147 RFLHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 205
R+L+ D + +S WS + + R+DY IVS+ LK RI +
Sbjct: 188 RYLY--PDQEGAYSWWSYRTNAREKNIGWRLDYVIVSDRLKQRISQAAI------CADIM 239
Query: 206 GSDHCPVSLEL 216
GSDHCPV + +
Sbjct: 240 GSDHCPVEMTV 250
>gi|387785665|ref|YP_006250761.1| putative exodeoxyribonuclease III [Streptococcus mutans LJ23]
gi|379132066|dbj|BAL68818.1| putative exodeoxyribonuclease III [Streptococcus mutans LJ23]
Length = 297
Score = 90.9 bits (224), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 58/189 (30%), Positives = 93/189 (49%), Gaps = 29/189 (15%)
Query: 31 DGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGDL 89
+GR+I EF+ F++ Y PN G + R+ WD++ ++ Q KP++ GD
Sbjct: 133 EGRIITLEFDDFFVTQVYTPNAG--DGLKRLDDRQIWDEKYAIYLAQLDKQKPVLATGDY 190
Query: 90 NVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFL 149
NV+H+EID++HP N+ PGFT ER F +L++G D +R++
Sbjct: 191 NVAHKEIDLAHPS------------SNRR---SPGFTDEERAGFTHLLEQG-FTDTFRYI 234
Query: 150 HKEKDMDCGFSW--SGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGS 207
H D+ +SW + K RIDY+++S L D+I+ EM G
Sbjct: 235 H--GDVPNVYSWWAQRSKTSKINNSGWRIDYWLISNRLSDKILKSEMIDSGTR------Q 286
Query: 208 DHCPVSLEL 216
DH P+ L++
Sbjct: 287 DHTPILLKI 295
>gi|450078845|ref|ZP_21851157.1| putative exodeoxyribonuclease III [Streptococcus mutans N3209]
gi|449209706|gb|EMC10214.1| putative exodeoxyribonuclease III [Streptococcus mutans N3209]
Length = 275
Score = 90.9 bits (224), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 58/189 (30%), Positives = 93/189 (49%), Gaps = 29/189 (15%)
Query: 31 DGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGDL 89
+GR+I EF+ F++ Y PN G + R+ WD++ ++ Q KP++ GD
Sbjct: 111 EGRIITLEFDDFFVTQVYTPNAG--DGLKRLDDRQIWDEKYAIYLAQLDKQKPVLATGDY 168
Query: 90 NVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFL 149
NV+H+EID++HP N+ PGFT ER F +L++G D +R++
Sbjct: 169 NVAHKEIDLAHPS------------SNRR---SPGFTDEERAGFTHLLEQG-FTDTFRYI 212
Query: 150 HKEKDMDCGFSW--SGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGS 207
H D+ +SW + K RIDY+++S L D+I+ EM G
Sbjct: 213 H--GDVPNVYSWWAQRSKTSKINNSGWRIDYWLISNRLSDKILKSEMIDSGTR------Q 264
Query: 208 DHCPVSLEL 216
DH P+ L++
Sbjct: 265 DHTPILLKI 273
>gi|348524661|ref|XP_003449841.1| PREDICTED: DNA-(apurinic or apyrimidinic site) lyase-like
[Oreochromis niloticus]
Length = 310
Score = 90.9 bits (224), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 59/192 (30%), Positives = 100/192 (52%), Gaps = 26/192 (13%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIW 85
+++ +GRVI AEF +FYL+ Y PN R+ WD + ++ + KPL+
Sbjct: 143 EHDKEGRVITAEFPSFYLVTAYVPNAS--RGLVRLDYRKTWDVDFRAYLSELDMQKPLVL 200
Query: 86 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 145
CGDLNV+H+EID+ +P+ NK++ GFT ER+ F +L G +D+
Sbjct: 201 CGDLNVAHQEIDLKNPKG------------NKKN---AGFTPEEREGFSQLLAAG-FVDS 244
Query: 146 YRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 205
+R L+ E+ F W+ + + R+DYF++S L + +++ +
Sbjct: 245 FRELYPEQTNAYTF-WTYMMNARSKNVGWRLDYFVLSSSLLPGLCDSKIRNKAM------ 297
Query: 206 GSDHCPVSLELS 217
GSDHCP++L ++
Sbjct: 298 GSDHCPITLHIA 309
>gi|357635898|ref|ZP_09133773.1| exodeoxyribonuclease III [Streptococcus macacae NCTC 11558]
gi|357584352|gb|EHJ51555.1| exodeoxyribonuclease III [Streptococcus macacae NCTC 11558]
Length = 276
Score = 90.9 bits (224), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 59/191 (30%), Positives = 93/191 (48%), Gaps = 29/191 (15%)
Query: 29 EPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCG 87
+ +GR+I EF+ F++ Y PN G + R+ WDK+ +++ KP++ G
Sbjct: 109 DAEGRIITLEFDKFFVTQVYTPNAG--DGLKRLDDRQIWDKKYADYLENLDKQKPVLATG 166
Query: 88 DLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYR 147
D NV+H+EID++HP N+ PGFT ER+ F +L +G D +R
Sbjct: 167 DYNVAHKEIDLAHPS------------SNRR---SPGFTDEERQGFTNLLDKG-FTDTFR 210
Query: 148 FLHKEKDMDCGFSW--SGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 205
++H D+ +SW + K RIDY++ S L D+I+ EM G
Sbjct: 211 YIH--GDIPEVYSWWAQRSKTSKINNSGWRIDYWLTSNRLADKILKSEMIDSGSR----- 263
Query: 206 GSDHCPVSLEL 216
DH P+ LE+
Sbjct: 264 -QDHTPILLEI 273
>gi|449980965|ref|ZP_21817505.1| putative exodeoxyribonuclease III [Streptococcus mutans 5SM3]
gi|450134133|ref|ZP_21870968.1| putative exodeoxyribonuclease III [Streptococcus mutans NLML8]
gi|449149929|gb|EMB53710.1| putative exodeoxyribonuclease III [Streptococcus mutans NLML8]
gi|449176153|gb|EMB78512.1| putative exodeoxyribonuclease III [Streptococcus mutans 5SM3]
Length = 275
Score = 90.9 bits (224), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 58/189 (30%), Positives = 93/189 (49%), Gaps = 29/189 (15%)
Query: 31 DGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGDL 89
+GR+I EF+ F++ Y PN G + R+ WD++ ++ Q KP++ GD
Sbjct: 111 EGRIITLEFDDFFVTQVYTPNAG--DGLKRLDDRQIWDEKYAIYLAQLDKQKPVLATGDY 168
Query: 90 NVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFL 149
NV+H+EID++HP N+ PGFT ER F +L++G D +R++
Sbjct: 169 NVAHKEIDLAHPS------------SNRR---SPGFTDEERAGFTHLLEQG-FTDTFRYI 212
Query: 150 HKEKDMDCGFSW--SGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGS 207
H D+ +SW + K RIDY+++S L D+I+ EM G
Sbjct: 213 H--GDVPNVYSWWAQRSKTSKINNSGWRIDYWLISNRLSDKILKSEMIDSGTR------Q 264
Query: 208 DHCPVSLEL 216
DH P+ L++
Sbjct: 265 DHTPILLKI 273
>gi|366166303|ref|ZP_09466058.1| exodeoxyribonuclease III [Acetivibrio cellulolyticus CD2]
Length = 251
Score = 90.9 bits (224), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 61/191 (31%), Positives = 96/191 (50%), Gaps = 26/191 (13%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIW 85
+++ +GRVI EF+ +Y++ Y PN+ + R KW+ ++ KP+I
Sbjct: 85 EHDKEGRVITLEFDEYYVVTVYTPNS--QRGLTRLHYRMKWEDDFLSYLKSLERYKPVIV 142
Query: 86 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 145
CGDLNV+H+EID+ +P+ NK++ GFT ER +F + + G ID
Sbjct: 143 CGDLNVAHKEIDLKNPQ------------SNKKN---AGFTEEERSKFDSYVNNG-FIDT 186
Query: 146 YRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 205
+R+ + ++ + WS + RIDYFIVSE +KDR+ +
Sbjct: 187 FRYFYPDR-IGVYTWWSYMFNSRQNNAGWRIDYFIVSERIKDRL------KDALVYSEIT 239
Query: 206 GSDHCPVSLEL 216
GSDHCPV + L
Sbjct: 240 GSDHCPVGILL 250
>gi|167957331|ref|ZP_02544405.1| exonuclease III [candidate division TM7 single-cell isolate TM7c]
Length = 265
Score = 90.9 bits (224), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 65/188 (34%), Positives = 98/188 (52%), Gaps = 28/188 (14%)
Query: 31 DGRVILAEFETFYLLNTYAPNNGWKEEENSFQ-RRRKWDKRIQEFVLQC-SGKPLIWCGD 88
+GR+I AEF+ F + Y PN+ K + + Q R +KWDK E++ + S KP+++CGD
Sbjct: 102 EGRIIAAEFDNFIVATVYTPNS--KGDLSRLQLRHQKWDKAWLEYMKKLESIKPVLFCGD 159
Query: 89 LNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRF 148
LNV+H E D+++P K + G+ GFT ER F A ++ G D +R
Sbjct: 160 LNVAHTEDDLANP---------------KPNIGKHGFTNEERAGFDAFIQSG-FKDTFRI 203
Query: 149 LHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSD 208
K ++ N + R RIDY++ SE+L ++I E Q H GSD
Sbjct: 204 FTKGNGYYSWWTHWAN--ARARNIGWRIDYWLASEKLANKI--TEAQIH----PDIMGSD 255
Query: 209 HCPVSLEL 216
HCPVS+ +
Sbjct: 256 HCPVSVTI 263
>gi|450062698|ref|ZP_21844475.1| putative exodeoxyribonuclease III [Streptococcus mutans NLML5]
gi|449205430|gb|EMC06177.1| putative exodeoxyribonuclease III [Streptococcus mutans NLML5]
Length = 275
Score = 90.9 bits (224), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 58/189 (30%), Positives = 93/189 (49%), Gaps = 29/189 (15%)
Query: 31 DGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGDL 89
+GR+I EF+ F++ Y PN G + R+ WD++ ++ Q KP++ GD
Sbjct: 111 EGRIITLEFDDFFVTQVYTPNAG--DGLKRLDDRQIWDEKYAIYLAQLDKQKPVLATGDY 168
Query: 90 NVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFL 149
NV+H+EID++HP N+ PGFT ER F +L++G D +R++
Sbjct: 169 NVAHKEIDLAHPS------------SNRR---SPGFTDEERAGFTHLLEQG-FTDTFRYI 212
Query: 150 HKEKDMDCGFSW--SGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGS 207
H D+ +SW + K RIDY+++S L D+I+ EM G
Sbjct: 213 H--GDVPNVYSWWAQRSKTSKINNSGWRIDYWLISNRLSDKILKSEMIDSGTR------Q 264
Query: 208 DHCPVSLEL 216
DH P+ L++
Sbjct: 265 DHTPILLKI 273
>gi|449910115|ref|ZP_21794552.1| putative exodeoxyribonuclease III [Streptococcus mutans OMZ175]
gi|450087652|ref|ZP_21854395.1| putative exodeoxyribonuclease III [Streptococcus mutans NV1996]
gi|450127489|ref|ZP_21868618.1| putative exodeoxyribonuclease III [Streptococcus mutans U2A]
gi|449217560|gb|EMC17602.1| putative exodeoxyribonuclease III [Streptococcus mutans NV1996]
gi|449230690|gb|EMC29939.1| putative exodeoxyribonuclease III [Streptococcus mutans U2A]
gi|449260262|gb|EMC57766.1| putative exodeoxyribonuclease III [Streptococcus mutans OMZ175]
Length = 275
Score = 90.9 bits (224), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 58/189 (30%), Positives = 93/189 (49%), Gaps = 29/189 (15%)
Query: 31 DGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGDL 89
+GR+I EF+ F++ Y PN G + R+ WD++ ++ Q KP++ GD
Sbjct: 111 EGRIITLEFDDFFVTQVYTPNAG--DGLKRLDDRQIWDEKYAIYLAQLDKQKPVLATGDY 168
Query: 90 NVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFL 149
NV+H+EID++HP N+ PGFT ER F +L++G D +R++
Sbjct: 169 NVAHKEIDLAHPS------------SNRR---SPGFTDEERAGFTHLLEQG-FTDTFRYI 212
Query: 150 HKEKDMDCGFSW--SGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGS 207
H D+ +SW + K RIDY+++S L D+I+ EM G
Sbjct: 213 H--GDVPNVYSWWAQRSKTSKINNSGWRIDYWLISNRLSDKILKSEMIDSGTR------Q 264
Query: 208 DHCPVSLEL 216
DH P+ L++
Sbjct: 265 DHTPILLKI 273
>gi|450159907|ref|ZP_21879708.1| putative exodeoxyribonuclease III [Streptococcus mutans 66-2A]
gi|449240671|gb|EMC39334.1| putative exodeoxyribonuclease III [Streptococcus mutans 66-2A]
Length = 275
Score = 90.9 bits (224), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 58/189 (30%), Positives = 93/189 (49%), Gaps = 29/189 (15%)
Query: 31 DGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGDL 89
+GR+I EF+ F++ Y PN G + R+ WD++ ++ Q KP++ GD
Sbjct: 111 EGRIITLEFDDFFVTQVYTPNAG--DGLKRLDDRQIWDEKYAIYLAQLDKQKPVLATGDY 168
Query: 90 NVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFL 149
NV+H+EID++HP N+ PGFT ER F +L++G D +R++
Sbjct: 169 NVAHKEIDLAHPS------------SNRR---SPGFTDEERDGFTHLLEQG-FTDTFRYI 212
Query: 150 HKEKDMDCGFSW--SGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGS 207
H D+ +SW + K RIDY+++S L D+I+ EM G
Sbjct: 213 H--GDVPNVYSWWAQRSKTSKINNSGWRIDYWLISNRLSDKILKSEMIDSGTR------Q 264
Query: 208 DHCPVSLEL 216
DH P+ L++
Sbjct: 265 DHTPILLKI 273
>gi|55821526|ref|YP_139968.1| 3'-exo-deoxyribonuclease [Streptococcus thermophilus LMG 18311]
gi|55737511|gb|AAV61153.1| 3'-exo-deoxyribonuclease [Streptococcus thermophilus LMG 18311]
Length = 275
Score = 90.9 bits (224), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 58/189 (30%), Positives = 91/189 (48%), Gaps = 29/189 (15%)
Query: 31 DGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGDL 89
+GR+I EF+TF++ Y PN G + R+ WDK+ +++ + KP++ GD
Sbjct: 111 EGRIITLEFDTFFVTQVYTPNAG--DGLKRLLERQIWDKKYADYLAELDAQKPVLATGDY 168
Query: 90 NVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFL 149
NV+H+EID+++P N+ PGFT ER F +L +G ID YR
Sbjct: 169 NVAHKEIDLANPS------------SNRR---SPGFTDEERAGFTNLLNKG-FIDTYR-- 210
Query: 150 HKEKDMDCGFSW--SGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGS 207
H D+ ++W + K RIDY++ S + D++I M G
Sbjct: 211 HLNGDVTGAYTWWAQRSKTSKINNTGWRIDYWLTSNRIADKVIKSNMIDSGDR------Q 264
Query: 208 DHCPVSLEL 216
DH P+ LE+
Sbjct: 265 DHTPIVLEI 273
>gi|24380027|ref|NP_721982.1| exodeoxyribonuclease III [Streptococcus mutans UA159]
gi|290579994|ref|YP_003484386.1| exodeoxyribonuclease III [Streptococcus mutans NN2025]
gi|449865178|ref|ZP_21778839.1| putative exodeoxyribonuclease III [Streptococcus mutans U2B]
gi|449872318|ref|ZP_21781457.1| putative exodeoxyribonuclease III [Streptococcus mutans 8ID3]
gi|449874956|ref|ZP_21781919.1| putative exodeoxyribonuclease III [Streptococcus mutans S1B]
gi|449893395|ref|ZP_21788687.1| putative exodeoxyribonuclease III [Streptococcus mutans SF12]
gi|449947417|ref|ZP_21807362.1| putative exodeoxyribonuclease III [Streptococcus mutans 11SSST2]
gi|449956392|ref|ZP_21809488.1| putative exodeoxyribonuclease III [Streptococcus mutans 4VF1]
gi|449969030|ref|ZP_21812969.1| putative exodeoxyribonuclease III [Streptococcus mutans 2VS1]
gi|449984183|ref|ZP_21818869.1| putative exodeoxyribonuclease III [Streptococcus mutans NFSM2]
gi|449999354|ref|ZP_21824494.1| putative exodeoxyribonuclease III [Streptococcus mutans N29]
gi|450005194|ref|ZP_21826552.1| putative exodeoxyribonuclease III [Streptococcus mutans NMT4863]
gi|450031272|ref|ZP_21833605.1| putative exodeoxyribonuclease III [Streptococcus mutans G123]
gi|450035308|ref|ZP_21834949.1| putative exodeoxyribonuclease III [Streptococcus mutans M21]
gi|450056224|ref|ZP_21841931.1| putative exodeoxyribonuclease III [Streptococcus mutans NLML4]
gi|450081460|ref|ZP_21851743.1| putative exodeoxyribonuclease III [Streptococcus mutans N66]
gi|450094138|ref|ZP_21856912.1| putative exodeoxyribonuclease III [Streptococcus mutans W6]
gi|450098379|ref|ZP_21857975.1| putative exodeoxyribonuclease III [Streptococcus mutans SF1]
gi|450138344|ref|ZP_21872113.1| putative exodeoxyribonuclease III [Streptococcus mutans NLML1]
gi|450143104|ref|ZP_21873237.1| putative exodeoxyribonuclease III [Streptococcus mutans 1ID3]
gi|450148336|ref|ZP_21875574.1| putative exodeoxyribonuclease III [Streptococcus mutans 14D]
gi|450166036|ref|ZP_21882130.1| putative exodeoxyribonuclease III [Streptococcus mutans B]
gi|450171670|ref|ZP_21884124.1| putative exodeoxyribonuclease III [Streptococcus mutans SM4]
gi|13182937|gb|AAK14994.1|AF233280_1 nuclease SmnA [Streptococcus mutans]
gi|24378017|gb|AAN59288.1|AE014995_5 putative exodeoxyribonuclease III [Streptococcus mutans UA159]
gi|254996893|dbj|BAH87494.1| putative exodeoxyribonuclease III [Streptococcus mutans NN2025]
gi|449152715|gb|EMB56415.1| putative exodeoxyribonuclease III [Streptococcus mutans 1ID3]
gi|449154571|gb|EMB58144.1| putative exodeoxyribonuclease III [Streptococcus mutans 8ID3]
gi|449168602|gb|EMB71410.1| putative exodeoxyribonuclease III [Streptococcus mutans 11SSST2]
gi|449170674|gb|EMB73370.1| putative exodeoxyribonuclease III [Streptococcus mutans 4VF1]
gi|449174469|gb|EMB76955.1| putative exodeoxyribonuclease III [Streptococcus mutans 2VS1]
gi|449180434|gb|EMB82591.1| putative exodeoxyribonuclease III [Streptococcus mutans NFSM2]
gi|449187090|gb|EMB88891.1| putative exodeoxyribonuclease III [Streptococcus mutans N29]
gi|449188836|gb|EMB90526.1| putative exodeoxyribonuclease III [Streptococcus mutans NMT4863]
gi|449191780|gb|EMB93240.1| putative exodeoxyribonuclease III [Streptococcus mutans G123]
gi|449195673|gb|EMB96986.1| putative exodeoxyribonuclease III [Streptococcus mutans M21]
gi|449207002|gb|EMC07686.1| putative exodeoxyribonuclease III [Streptococcus mutans NLML4]
gi|449215265|gb|EMC15472.1| putative exodeoxyribonuclease III [Streptococcus mutans N66]
gi|449216620|gb|EMC16722.1| putative exodeoxyribonuclease III [Streptococcus mutans W6]
gi|449221576|gb|EMC21344.1| putative exodeoxyribonuclease III [Streptococcus mutans SF1]
gi|449234127|gb|EMC33151.1| putative exodeoxyribonuclease III [Streptococcus mutans NLML1]
gi|449236016|gb|EMC34952.1| putative exodeoxyribonuclease III [Streptococcus mutans 14D]
gi|449240040|gb|EMC38735.1| putative exodeoxyribonuclease III [Streptococcus mutans B]
gi|449243722|gb|EMC42131.1| putative exodeoxyribonuclease III [Streptococcus mutans SM4]
gi|449254334|gb|EMC52243.1| putative exodeoxyribonuclease III [Streptococcus mutans S1B]
gi|449255826|gb|EMC53666.1| putative exodeoxyribonuclease III [Streptococcus mutans SF12]
gi|449264441|gb|EMC61783.1| putative exodeoxyribonuclease III [Streptococcus mutans U2B]
Length = 275
Score = 90.9 bits (224), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 58/189 (30%), Positives = 93/189 (49%), Gaps = 29/189 (15%)
Query: 31 DGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGDL 89
+GR+I EF+ F++ Y PN G + R+ WD++ ++ Q KP++ GD
Sbjct: 111 EGRIITLEFDDFFVTQVYTPNAG--DGLKRLDDRQIWDEKYAIYLAQLDKQKPVLATGDY 168
Query: 90 NVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFL 149
NV+H+EID++HP N+ PGFT ER F +L++G D +R++
Sbjct: 169 NVAHKEIDLAHPS------------SNRR---SPGFTDEERAGFTHLLEQG-FTDTFRYI 212
Query: 150 HKEKDMDCGFSW--SGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGS 207
H D+ +SW + K RIDY+++S L D+I+ EM G
Sbjct: 213 H--GDVPNVYSWWAQRSKTSKINNSGWRIDYWLISNRLSDKILKSEMIDSGTR------Q 264
Query: 208 DHCPVSLEL 216
DH P+ L++
Sbjct: 265 DHTPILLKI 273
>gi|307108235|gb|EFN56476.1| hypothetical protein CHLNCDRAFT_30910 [Chlorella variabilis]
Length = 371
Score = 90.9 bits (224), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 63/195 (32%), Positives = 93/195 (47%), Gaps = 25/195 (12%)
Query: 23 LSALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGK 81
+ A +++ +GRVI AEF FYL+N Y PN+G + + R KWDK ++ + K
Sbjct: 199 IGAEEHDGEGRVITAEFSAFYLVNCYTPNSGEGLKRLGY-RVEKWDKDFSAYLKRLEQHK 257
Query: 82 PLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGR 141
P++ GDLNV+ EID+ P K + GFT ER F A L
Sbjct: 258 PVVVTGDLNVAPAEIDIHSP---------------KTNLKSAGFTPQERASFAANLLGQG 302
Query: 142 LIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIEL 201
+D +R + E + + N G +G R+D+F+VS++L + C L
Sbjct: 303 FVDCFRTQYPEAVAYTYWGYRFNARGNNKG--WRLDHFLVSQQLHSSLHDC------YHL 354
Query: 202 EGFYGSDHCPVSLEL 216
GSDHCP+ L L
Sbjct: 355 PAIMGSDHCPLGLVL 369
>gi|291545257|emb|CBL18366.1| exodeoxyribonuclease III [Ruminococcus champanellensis 18P13]
Length = 256
Score = 90.9 bits (224), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 64/186 (34%), Positives = 91/186 (48%), Gaps = 28/186 (15%)
Query: 31 DGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGDL 89
+GRV+ E+ FYL+N Y PN+ K E R +W+ +++++L KP+I+CGDL
Sbjct: 88 EGRVLTLEYPDFYLVNAYVPNS--KRELLRLDYRMEWEDALRQYLLGLDARKPVIYCGDL 145
Query: 90 NVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFL 149
NV+H EID+ +P K + GFT ER R +L G D +R L
Sbjct: 146 NVAHREIDLKNP---------------KSNRRNAGFTDEERGRLSTLLDSG-FTDTFRLL 189
Query: 150 HKEKDMDCGFSWSGNPI-GKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSD 208
+ D ++W + + RIDYFIVS IA +Q I + GSD
Sbjct: 190 Y--PDTAGAYTWWSYMFHAREKNAGWRIDYFIVSNR-----IAPLVQDSLI-YKDVLGSD 241
Query: 209 HCPVSL 214
HCPV L
Sbjct: 242 HCPVGL 247
>gi|169837263|ref|ZP_02870451.1| exonuclease III [candidate division TM7 single-cell isolate TM7a]
Length = 267
Score = 90.9 bits (224), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 65/188 (34%), Positives = 98/188 (52%), Gaps = 28/188 (14%)
Query: 31 DGRVILAEFETFYLLNTYAPNNGWKEEENSFQ-RRRKWDKRIQEFVLQC-SGKPLIWCGD 88
+GR+I AEF+ F + Y PN+ K + + Q R +KWDK E++ + S KP+++CGD
Sbjct: 104 EGRIIAAEFDNFIVATVYTPNS--KGDLSRLQLRHQKWDKAWLEYMKKLESIKPVLFCGD 161
Query: 89 LNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRF 148
LNV+H E D+++P K + G+ GFT ER F A ++ G D +R
Sbjct: 162 LNVAHTEDDLANP---------------KPNIGKHGFTNEERAGFDAFIQSG-FKDTFRI 205
Query: 149 LHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSD 208
K ++ N + R RIDY++ SE+L ++I E Q H GSD
Sbjct: 206 FTKGNGYYSWWTHWAN--ARARNIGWRIDYWLASEKLANKI--TEAQIH----PDIMGSD 257
Query: 209 HCPVSLEL 216
HCPVS+ +
Sbjct: 258 HCPVSVTI 265
>gi|381395703|ref|ZP_09921398.1| exodeoxyribonuclease III [Glaciecola punicea DSM 14233 = ACAM 611]
gi|379328582|dbj|GAB56531.1| exodeoxyribonuclease III [Glaciecola punicea DSM 14233 = ACAM 611]
Length = 255
Score = 90.9 bits (224), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 60/193 (31%), Positives = 95/193 (49%), Gaps = 28/193 (14%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIW 85
+++ +GRV+ AEF FYL+ Y PN+G E R +WD ++ KP++
Sbjct: 87 EHDQEGRVLCAEFSDFYLVTVYTPNSG--SELKRLGYRGQWDADFLTYIKALEAKKPVVI 144
Query: 86 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 145
CGDLN +H+++D++ P+ PN G+T E ++ G ID+
Sbjct: 145 CGDLNAAHKDLDLARPK------------PNYNK--SAGYTQQEIDGIDNLIAAG-FIDS 189
Query: 146 YRFLHKEKDMDCGFSWSGNPIG-KYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGF 204
+R +H + +SW G + R RIDYF+VS L I E+ +
Sbjct: 190 FRHVHPDT---VKYSWWSYRAGARERNVGWRIDYFLVSSALAANISDAEI------YDDI 240
Query: 205 YGSDHCPVSLELS 217
+GSDHCPVS++L+
Sbjct: 241 HGSDHCPVSVKLA 253
>gi|397650247|ref|YP_006490774.1| exodeoxyribonuclease III [Streptococcus mutans GS-5]
gi|449886258|ref|ZP_21786082.1| putative exodeoxyribonuclease III [Streptococcus mutans SA41]
gi|449899435|ref|ZP_21791014.1| putative exodeoxyribonuclease III [Streptococcus mutans R221]
gi|449902334|ref|ZP_21791521.1| putative exodeoxyribonuclease III [Streptococcus mutans M230]
gi|449914622|ref|ZP_21795690.1| putative exodeoxyribonuclease III [Streptococcus mutans 15JP3]
gi|449918470|ref|ZP_21797358.1| putative exodeoxyribonuclease III [Streptococcus mutans 1SM1]
gi|449924021|ref|ZP_21799361.1| putative exodeoxyribonuclease III [Streptococcus mutans 4SM1]
gi|449932133|ref|ZP_21802696.1| putative exodeoxyribonuclease III [Streptococcus mutans 3SN1]
gi|449936390|ref|ZP_21803954.1| putative exodeoxyribonuclease III [Streptococcus mutans 2ST1]
gi|449965327|ref|ZP_21811828.1| putative exodeoxyribonuclease III [Streptococcus mutans 15VF2]
gi|449974218|ref|ZP_21815156.1| putative exodeoxyribonuclease III [Streptococcus mutans 11VS1]
gi|449990606|ref|ZP_21821643.1| putative exodeoxyribonuclease III [Streptococcus mutans NVAB]
gi|449995318|ref|ZP_21822938.1| putative exodeoxyribonuclease III [Streptococcus mutans A9]
gi|450009909|ref|ZP_21828413.1| putative exodeoxyribonuclease III [Streptococcus mutans A19]
gi|450024674|ref|ZP_21831354.1| putative exodeoxyribonuclease III [Streptococcus mutans U138]
gi|450039059|ref|ZP_21836028.1| putative exodeoxyribonuclease III [Streptococcus mutans T4]
gi|450066012|ref|ZP_21845736.1| putative exodeoxyribonuclease III [Streptococcus mutans NLML9]
gi|450074617|ref|ZP_21849401.1| putative exodeoxyribonuclease III [Streptococcus mutans M2A]
gi|450104975|ref|ZP_21859579.1| putative exodeoxyribonuclease III [Streptococcus mutans SF14]
gi|450112046|ref|ZP_21863021.1| putative exodeoxyribonuclease III [Streptococcus mutans SM6]
gi|450114997|ref|ZP_21863656.1| putative exodeoxyribonuclease III [Streptococcus mutans ST1]
gi|450121162|ref|ZP_21866165.1| putative exodeoxyribonuclease III [Streptococcus mutans ST6]
gi|450155950|ref|ZP_21878557.1| putative exodeoxyribonuclease III [Streptococcus mutans 21]
gi|450175808|ref|ZP_21885407.1| putative exodeoxyribonuclease III [Streptococcus mutans SM1]
gi|450181071|ref|ZP_21887604.1| putative exodeoxyribonuclease III [Streptococcus mutans 24]
gi|392603816|gb|AFM81980.1| exodeoxyribonuclease III [Streptococcus mutans GS-5]
gi|449157725|gb|EMB61160.1| putative exodeoxyribonuclease III [Streptococcus mutans 15JP3]
gi|449160314|gb|EMB63587.1| putative exodeoxyribonuclease III [Streptococcus mutans 1SM1]
gi|449161746|gb|EMB64920.1| putative exodeoxyribonuclease III [Streptococcus mutans 3SN1]
gi|449163318|gb|EMB66426.1| putative exodeoxyribonuclease III [Streptococcus mutans 4SM1]
gi|449165605|gb|EMB68595.1| putative exodeoxyribonuclease III [Streptococcus mutans 2ST1]
gi|449171324|gb|EMB73989.1| putative exodeoxyribonuclease III [Streptococcus mutans 15VF2]
gi|449178594|gb|EMB80847.1| putative exodeoxyribonuclease III [Streptococcus mutans 11VS1]
gi|449181544|gb|EMB83625.1| putative exodeoxyribonuclease III [Streptococcus mutans NVAB]
gi|449184613|gb|EMB86546.1| putative exodeoxyribonuclease III [Streptococcus mutans A9]
gi|449190538|gb|EMB92100.1| putative exodeoxyribonuclease III [Streptococcus mutans A19]
gi|449191723|gb|EMB93189.1| putative exodeoxyribonuclease III [Streptococcus mutans U138]
gi|449200715|gb|EMC01736.1| putative exodeoxyribonuclease III [Streptococcus mutans T4]
gi|449208906|gb|EMC09462.1| putative exodeoxyribonuclease III [Streptococcus mutans M2A]
gi|449209331|gb|EMC09860.1| putative exodeoxyribonuclease III [Streptococcus mutans NLML9]
gi|449222800|gb|EMC22515.1| putative exodeoxyribonuclease III [Streptococcus mutans SM6]
gi|449225195|gb|EMC24806.1| putative exodeoxyribonuclease III [Streptococcus mutans SF14]
gi|449228466|gb|EMC27831.1| putative exodeoxyribonuclease III [Streptococcus mutans ST1]
gi|449229432|gb|EMC28746.1| putative exodeoxyribonuclease III [Streptococcus mutans ST6]
gi|449236512|gb|EMC35427.1| putative exodeoxyribonuclease III [Streptococcus mutans 21]
gi|449246186|gb|EMC44498.1| putative exodeoxyribonuclease III [Streptococcus mutans SM1]
gi|449247359|gb|EMC45642.1| putative exodeoxyribonuclease III [Streptococcus mutans 24]
gi|449254437|gb|EMC52345.1| putative exodeoxyribonuclease III [Streptococcus mutans SA41]
gi|449258366|gb|EMC55948.1| putative exodeoxyribonuclease III [Streptococcus mutans R221]
gi|449262860|gb|EMC60299.1| putative exodeoxyribonuclease III [Streptococcus mutans M230]
Length = 275
Score = 90.9 bits (224), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 58/189 (30%), Positives = 93/189 (49%), Gaps = 29/189 (15%)
Query: 31 DGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGDL 89
+GR+I EF+ F++ Y PN G + R+ WD++ ++ Q KP++ GD
Sbjct: 111 EGRIITLEFDDFFVTQVYTPNAG--DGLKRLDDRQIWDEKYAIYLAQLDKQKPVLATGDY 168
Query: 90 NVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFL 149
NV+H+EID++HP N+ PGFT ER F +L++G D +R++
Sbjct: 169 NVAHKEIDLAHPS------------SNRR---SPGFTDEERAGFTHLLEQG-FTDTFRYI 212
Query: 150 HKEKDMDCGFSW--SGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGS 207
H D+ +SW + K RIDY+++S L D+I+ EM G
Sbjct: 213 H--GDVPNVYSWWAQRSKTSKINNSGWRIDYWLISNRLSDKILKSEMIDSGTR------Q 264
Query: 208 DHCPVSLEL 216
DH P+ L++
Sbjct: 265 DHTPILLKI 273
>gi|229366136|gb|ACQ58048.1| DNA-apurinic or apyrimidinic site lyase [Anoplopoma fimbria]
Length = 310
Score = 90.9 bits (224), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 64/193 (33%), Positives = 106/193 (54%), Gaps = 28/193 (14%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIW 85
+++ +GRVI AEF FYL+ TY PN+ + R+ WD+ + ++ + KPL+
Sbjct: 143 EHDKEGRVITAEFPNFYLVTTYVPNSS--KGLVRLDYRKTWDEDFRAYLSELDMQKPLVL 200
Query: 86 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 145
CGDLNV+H+EID+ +P+ NK++ GFT+ ER+ FG +L G D+
Sbjct: 201 CGDLNVAHQEIDLKNPKG------------NKKN---AGFTVEEREGFGQLLGSG-FADS 244
Query: 146 YRFLHKEKDMDCGF-SWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGF 204
+R L+ E+ F ++ N GK G R+DYF++S L + +++ +
Sbjct: 245 FRELYPEQANAYTFWTYMMNSRGKNVG--WRLDYFLLSSSLLPGLCDSKIRSKAL----- 297
Query: 205 YGSDHCPVSLELS 217
GSDHCP++L ++
Sbjct: 298 -GSDHCPITLHIA 309
>gi|394994125|ref|ZP_10386855.1| ExoA [Bacillus sp. 916]
gi|393805011|gb|EJD66400.1| ExoA [Bacillus sp. 916]
Length = 252
Score = 90.9 bits (224), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 59/190 (31%), Positives = 95/190 (50%), Gaps = 26/190 (13%)
Query: 28 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 86
++ +GRVI EFE +++N Y PN K R +W+ ++++ + KP+I C
Sbjct: 86 HDQEGRVITLEFEHVFVVNCYTPNA--KRGLERIDYRLQWEADFKDYLQKLDRKKPVILC 143
Query: 87 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 146
GDLNV+H EID+ +P K + GF+ ER+ F A+L G D++
Sbjct: 144 GDLNVAHREIDLKNP---------------KANRKNAGFSEQEREAFSALLNAG-FTDSF 187
Query: 147 RFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYG 206
R+L+ +++ + WS + + R+DY IVS+ LK RI + G
Sbjct: 188 RYLYPDREGAYSW-WSYRTNAREKNIGWRLDYVIVSDRLKQRISQAAI------CADIMG 240
Query: 207 SDHCPVSLEL 216
SDHCPV + +
Sbjct: 241 SDHCPVEMTV 250
>gi|315221911|ref|ZP_07863822.1| exodeoxyribonuclease III [Streptococcus anginosus F0211]
gi|315188877|gb|EFU22581.1| exodeoxyribonuclease III [Streptococcus anginosus F0211]
Length = 275
Score = 90.5 bits (223), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 57/191 (29%), Positives = 90/191 (47%), Gaps = 29/191 (15%)
Query: 29 EPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCG 87
+ +GR+I EF+ F++ Y PN G + + R+ WDK+ +++ KP++ G
Sbjct: 109 DSEGRIITLEFDNFFVTQVYTPNAG--DGLKRLEDRQIWDKKYADYLTALDIEKPVLATG 166
Query: 88 DLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYR 147
D NV+H EID++HP N+ PGFT ER F +L G D +R
Sbjct: 167 DYNVAHNEIDLAHPS------------SNRR---SPGFTDEERSGFTNLLNRG-FTDTFR 210
Query: 148 FLHKEKDMDCGFSW--SGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 205
++H D+ +SW + K RIDY++ S + D++ EM G
Sbjct: 211 YIH--GDIPNVYSWWAQRSKTSKINNSGWRIDYWLTSNRIADKVTKSEMIDSGTR----- 263
Query: 206 GSDHCPVSLEL 216
DH P+ LE+
Sbjct: 264 -QDHTPIVLEI 273
>gi|405982630|ref|ZP_11040941.1| exodeoxyribonuclease III (xth) [Slackia piriformis YIT 12062]
gi|404389339|gb|EJZ84415.1| exodeoxyribonuclease III (xth) [Slackia piriformis YIT 12062]
Length = 285
Score = 90.5 bits (223), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 65/223 (29%), Positives = 97/223 (43%), Gaps = 60/223 (26%)
Query: 29 EPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEF-------------- 74
+ +GR++ EF+ ++ ++ Y PN + E R WD ++F
Sbjct: 86 DDEGRIVALEFDDYWFVDVYTPNA--QNELARIDHRMAWDDAFRDFCKNLEKGAIPAGVA 143
Query: 75 VLQC---------------------SGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYV 113
V C S KP++ CGD NV+H+EID+ +P
Sbjct: 144 VQDCAEGEGHVSISELPLTQEGERTSAKPVVMCGDFNVAHQEIDLKNP------------ 191
Query: 114 PPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKR 173
PN+ G GF+ ER++F +L G +D +R LH ++ + WS +
Sbjct: 192 GPNR---GNAGFSDEEREKFTRLLDAG-FVDTFRVLHPDEAGAYSW-WSYRFNARKNNAG 246
Query: 174 MRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 216
RIDYF+VSE L+D I M GSDHCPVS+EL
Sbjct: 247 WRIDYFLVSESLRDAIHDARMHAD------IMGSDHCPVSVEL 283
>gi|420148029|ref|ZP_14655302.1| Exodeoxyribonuclease III [Lactobacillus gasseri CECT 5714]
gi|398400376|gb|EJN53933.1| Exodeoxyribonuclease III [Lactobacillus gasseri CECT 5714]
Length = 275
Score = 90.5 bits (223), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 58/190 (30%), Positives = 93/190 (48%), Gaps = 29/190 (15%)
Query: 31 DGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGDL 89
+GR++ EF+ +Y+ Y PN+G E R+ WD++ E++ + KP+I GD
Sbjct: 111 EGRILTLEFDNYYVTQVYTPNSG--NELKRLDDRQVWDEKYTEYLQKLDQVKPVIASGDY 168
Query: 90 NVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFL 149
NV+H ID+ HPE + GFT ER+ F +LK G D +R +
Sbjct: 169 NVAHTPIDLKHPE---------------NNHHNAGFTDEERQDFDKLLKLG-FTDTFRKI 212
Query: 150 HKEKDMDCGFSWSGNPI--GKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGS 207
H +++ +SW + K RIDY+IVS + +++ EM L+
Sbjct: 213 H--GNVEGVYSWWAQRVRTSKANNSGWRIDYYIVSNRIANQVTKSEM------LDTGERK 264
Query: 208 DHCPVSLELS 217
DHCP+ LE++
Sbjct: 265 DHCPIMLEIN 274
>gi|389816348|ref|ZP_10207511.1| exodeoxyribonuclease III [Planococcus antarcticus DSM 14505]
gi|388465341|gb|EIM07660.1| exodeoxyribonuclease III [Planococcus antarcticus DSM 14505]
Length = 251
Score = 90.5 bits (223), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 63/198 (31%), Positives = 100/198 (50%), Gaps = 30/198 (15%)
Query: 23 LSALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-K 81
L + +++ +GR+I EF+ Y++ Y PN+ + R W++ I FV K
Sbjct: 80 LGSEEHDTEGRMIALEFDGHYVVTVYTPNS--QHGLLRLDYRLLWEEAILSFVKTLDNQK 137
Query: 82 PLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGR 141
P+I CGDLNV+HEEID+ +P+ NK++ GFT ER + L +G
Sbjct: 138 PVILCGDLNVAHEEIDLKNPK------------ANKKN---SGFTPDERGKMTQFLTDG- 181
Query: 142 LIDAYRFLHKEKDMDCGFS--WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGI 199
+D +R H + GF WS + + RIDYFI S++L R+ + ++
Sbjct: 182 FVDTFRHFHP---TETGFYSWWSYRSNCREKNVGWRIDYFIASQKLLPRLKSAKIHA--- 235
Query: 200 ELEGFYGSDHCPVSLELS 217
+GSDHCPV L+++
Sbjct: 236 ---DVWGSDHCPVELQIA 250
>gi|320354727|ref|YP_004196066.1| exodeoxyribonuclease III Xth [Desulfobulbus propionicus DSM 2032]
gi|320123229|gb|ADW18775.1| exodeoxyribonuclease III Xth [Desulfobulbus propionicus DSM 2032]
Length = 481
Score = 90.5 bits (223), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 59/189 (31%), Positives = 99/189 (52%), Gaps = 27/189 (14%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIW 85
+++ +GRV+ E+ FYL+NTY+PN + E ++++++ + ++ + S K ++
Sbjct: 316 QFDDEGRVLTLEYPDFYLINTYSPNA--QPELKRLAFKQEFNRTLLAYMDRLRSEKTVVL 373
Query: 86 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 145
CGDLNV+H+EID+++P K + PGF+ ER ++ G +D
Sbjct: 374 CGDLNVAHKEIDLANP---------------KANVKNPGFSEQERAWMDELIAAG-YVDT 417
Query: 146 YRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 205
+R ++E +S+ N K G RIDYFIV +DR++ + G
Sbjct: 418 FRQFNQEAGQYTWWSYRFNARAKNIG--WRIDYFIVDGSSRDRVLEAAIHGE------IT 469
Query: 206 GSDHCPVSL 214
GSDHCPVSL
Sbjct: 470 GSDHCPVSL 478
>gi|229828142|ref|ZP_04454211.1| hypothetical protein GCWU000342_00199 [Shuttleworthia satelles DSM
14600]
gi|229792736|gb|EEP28850.1| hypothetical protein GCWU000342_00199 [Shuttleworthia satelles DSM
14600]
Length = 277
Score = 90.5 bits (223), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 59/189 (31%), Positives = 91/189 (48%), Gaps = 29/189 (15%)
Query: 31 DGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGDL 89
+GR++ E F+ Y PN G + R++WD R +++ KP+I CGD
Sbjct: 113 EGRILTIETADFFFTTVYTPNAG--DGLRRLDDRQQWDARYADYLAGLDARKPVIACGDY 170
Query: 90 NVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFL 149
NV+HEEID+ +P+ + GFT ER+ F +L G D++R L
Sbjct: 171 NVAHEEIDLKNPD---------------ANHMSAGFTDQEREGFTRLLDRG-FADSFRCL 214
Query: 150 HKEKDMDCGFSWSGNPI--GKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGS 207
H +D+ +SW + K RIDYF+VS+ + +R+ + EM G
Sbjct: 215 H--RDLADAYSWWAQRVKSSKINNSGWRIDYFLVSDRILNRVNSSEMIDSGAR------Q 266
Query: 208 DHCPVSLEL 216
DHCP+ LE+
Sbjct: 267 DHCPLLLEI 275
>gi|300362953|ref|ZP_07059123.1| exodeoxyribonuclease III [Lactobacillus gasseri JV-V03]
gi|300353003|gb|EFJ68881.1| exodeoxyribonuclease III [Lactobacillus gasseri JV-V03]
Length = 268
Score = 90.5 bits (223), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 60/187 (32%), Positives = 95/187 (50%), Gaps = 27/187 (14%)
Query: 31 DGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGDL 89
+GR I EF FY ++ P +G K + F R W + + +V + KP+I GD+
Sbjct: 102 EGRSITLEFPNFYFIDVQVPFSGEKLQRLDF--RELWAQTFRNYVTKLMQYKPVIIGGDM 159
Query: 90 NVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFL 149
+V+HE+ID++ P+ ++ GFT ERK F +L G ID +R+
Sbjct: 160 SVAHEKIDLAEPD---------------DNHRHAGFTGIERKEFSELLNAG-FIDTFRYF 203
Query: 150 HKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDH 209
H ++ +S+ + K G R+DYF+VS L+D+II ++ L GSDH
Sbjct: 204 HPDEAKYTYWSYREDARAKNIG--WRLDYFLVSHNLEDKIINTKI------LNNIMGSDH 255
Query: 210 CPVSLEL 216
CP+ L+L
Sbjct: 256 CPIELDL 262
>gi|449881939|ref|ZP_21784704.1| putative exodeoxyribonuclease III [Streptococcus mutans SA38]
gi|449250748|gb|EMC48797.1| putative exodeoxyribonuclease III [Streptococcus mutans SA38]
Length = 275
Score = 90.5 bits (223), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 58/189 (30%), Positives = 93/189 (49%), Gaps = 29/189 (15%)
Query: 31 DGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGDL 89
+GR+I EF+ F++ Y PN G + R+ WD++ ++ Q KP++ GD
Sbjct: 111 EGRIITLEFDGFFVTQVYTPNAG--DGLKRLDDRQIWDEKYAIYLAQLDKQKPVLATGDY 168
Query: 90 NVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFL 149
NV+H+EID++HP N+ PGFT ER F +L++G D +R++
Sbjct: 169 NVAHKEIDLAHPS------------SNRR---SPGFTDEERAGFTHLLEQG-FTDTFRYI 212
Query: 150 HKEKDMDCGFSW--SGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGS 207
H D+ +SW + K RIDY+++S L D+I+ EM G
Sbjct: 213 H--GDVPNVYSWWAQRSKTSKINNSGWRIDYWLISNRLSDKILKSEMIDSGTR------Q 264
Query: 208 DHCPVSLEL 216
DH P+ L++
Sbjct: 265 DHTPILLKI 273
>gi|335031457|ref|ZP_08524893.1| exodeoxyribonuclease III [Streptococcus anginosus SK52 = DSM 20563]
gi|333769561|gb|EGL46670.1| exodeoxyribonuclease III [Streptococcus anginosus SK52 = DSM 20563]
Length = 275
Score = 90.5 bits (223), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 58/191 (30%), Positives = 89/191 (46%), Gaps = 29/191 (15%)
Query: 29 EPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCG 87
+ +GR+I EFE F++ Y PN G + + R+ WDK+ +++ KP++ G
Sbjct: 109 DAEGRIITLEFEKFFVTQVYTPNAG--DGLKRLEERQIWDKKYADYLTALDIEKPVLATG 166
Query: 88 DLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYR 147
D NV+H EID++HP N+ PGFT ER F +L G D +R
Sbjct: 167 DYNVAHNEIDLAHPS------------SNRR---SPGFTDEERSGFTNLLNRG-FTDTFR 210
Query: 148 FLHKEKDMDCGFSW--SGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 205
++H D +SW + K RIDY++ S + D++ EM G
Sbjct: 211 YIH--GDNPNVYSWWAQRSKTSKINNSGWRIDYWLTSNRIADKVTKSEMIDSGTR----- 263
Query: 206 GSDHCPVSLEL 216
DH P+ LE+
Sbjct: 264 -QDHTPIVLEI 273
>gi|397641752|gb|EJK74832.1| hypothetical protein THAOC_03468, partial [Thalassiosira oceanica]
Length = 599
Score = 90.5 bits (223), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 70/196 (35%), Positives = 98/196 (50%), Gaps = 29/196 (14%)
Query: 28 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFV--LQCSGKPLIW 85
++ +GR+ +AEF FYL+NTY PN+G K + + R +WD + L+ GKP+IW
Sbjct: 422 HDGEGRICIAEFPLFYLVNTYVPNSGQKLDRLKY-RTEEWDTDFLHKMRSLEDDGKPVIW 480
Query: 86 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 145
GDLNV+ E D + AK ++P + G T ER F L G +DA
Sbjct: 481 LGDLNVAFNEKDT----WNEGAK---HLPKSA------GTTPEERASFDRQLGAG-FVDA 526
Query: 146 YRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEEL-----KDRIIACEMQGHGIE 200
+R LH E + WS + K +R+DYFI S+EL K R+ M
Sbjct: 527 FRHLHPEGRGHYSY-WSQRAGNRGPNKGLRLDYFICSQELFEDGSKVRVRDSYM------ 579
Query: 201 LEGFYGSDHCPVSLEL 216
L GSDHCP+ LE+
Sbjct: 580 LPDMEGSDHCPIVLEI 595
>gi|194466723|ref|ZP_03072710.1| exodeoxyribonuclease III Xth [Lactobacillus reuteri 100-23]
gi|194453759|gb|EDX42656.1| exodeoxyribonuclease III Xth [Lactobacillus reuteri 100-23]
Length = 253
Score = 90.5 bits (223), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 60/189 (31%), Positives = 96/189 (50%), Gaps = 28/189 (14%)
Query: 28 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWC 86
++ +GR+I E+ FYL++ Y P +G E+ R WD+ ++V S KP+I
Sbjct: 85 FDKEGRLITLEYPNFYLIDVYVPVSG--EKLQHLDYRLDWDRAFLDYVTNLQSSKPVIIG 142
Query: 87 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 146
GD++V+++ ID++ P ED + GFT ER FG +L G L D +
Sbjct: 143 GDMSVAYQPIDLAEP---------------TEDHHKAGFTKQERSDFGKLLDAG-LTDTF 186
Query: 147 RFLHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 205
R+LH ++ ++ WS + R R+DYF+VS+ K+RI ++ L
Sbjct: 187 RYLH--PNLHGAYTWWSYRYDARERNVGWRLDYFLVSDVWKERIEEAKI------LSDVK 238
Query: 206 GSDHCPVSL 214
GS HCP+ L
Sbjct: 239 GSSHCPIEL 247
>gi|257877428|ref|ZP_05657081.1| exodeoxyribonuclease [Enterococcus casseliflavus EC20]
gi|325568814|ref|ZP_08145107.1| exodeoxyribonuclease III [Enterococcus casseliflavus ATCC 12755]
gi|257811594|gb|EEV40414.1| exodeoxyribonuclease [Enterococcus casseliflavus EC20]
gi|325157852|gb|EGC70008.1| exodeoxyribonuclease III [Enterococcus casseliflavus ATCC 12755]
Length = 250
Score = 90.5 bits (223), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 57/192 (29%), Positives = 96/192 (50%), Gaps = 26/192 (13%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIW 85
+++ +GRVI E+ F+L+ Y PN+ + E R W+ ++ + KP+I
Sbjct: 84 EHDTEGRVITLEYPEFFLITCYTPNS--QNELRRLDYRMTWEDAFLAYLTELKQQKPVIL 141
Query: 86 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 145
CGDLNV+H+ ID+ + K + GFT ER++F +L G D
Sbjct: 142 CGDLNVAHKNIDIKNW---------------KTNQKSAGFTPEEREKFSTLLAAG-FTDT 185
Query: 146 YRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 205
+R+ + + + + WS + RIDYF+VS++L +R++ ++ I
Sbjct: 186 FRYFYPDAEGIYSW-WSYRFNARKNNAGWRIDYFVVSDDLNERLLDAKIHTDII------ 238
Query: 206 GSDHCPVSLELS 217
GSDHCPV L+L+
Sbjct: 239 GSDHCPVELDLN 250
>gi|450046094|ref|ZP_21838754.1| putative exodeoxyribonuclease III [Streptococcus mutans N34]
gi|449199268|gb|EMC00342.1| putative exodeoxyribonuclease III [Streptococcus mutans N34]
Length = 275
Score = 90.5 bits (223), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 58/189 (30%), Positives = 93/189 (49%), Gaps = 29/189 (15%)
Query: 31 DGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGDL 89
+GR+I EF+ F++ Y PN G + R+ WD++ ++ Q KP++ GD
Sbjct: 111 EGRIITLEFDDFFVTQVYTPNAG--DGLKRLDDRQIWDEKYVIYLAQLDKQKPVLATGDY 168
Query: 90 NVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFL 149
NV+H+EID++HP N+ PGFT ER F +L++G D +R++
Sbjct: 169 NVAHKEIDLAHPS------------SNRR---SPGFTDEERAGFTHLLEQG-FTDTFRYI 212
Query: 150 HKEKDMDCGFSW--SGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGS 207
H D+ +SW + K RIDY+++S L D+I+ EM G
Sbjct: 213 H--GDVPNVYSWWAQRSKTSKINNSGWRIDYWLISNRLSDKILKSEMIDSGTR------Q 264
Query: 208 DHCPVSLEL 216
DH P+ L++
Sbjct: 265 DHTPILLKI 273
>gi|294790372|ref|ZP_06755530.1| exodeoxyribonuclease III [Scardovia inopinata F0304]
gi|294458269|gb|EFG26622.1| exodeoxyribonuclease III [Scardovia inopinata F0304]
Length = 276
Score = 90.5 bits (223), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 58/190 (30%), Positives = 89/190 (46%), Gaps = 29/190 (15%)
Query: 31 DGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDL 89
+GR+ EF FYL+N Y PN+G + R+ WD + ++ + KP++ CGD
Sbjct: 112 EGRLQTLEFPDFYLVNVYTPNSG--DGLRRLSDRQLWDDAYRAYLTELDEAKPILACGDF 169
Query: 90 NVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFL 149
NV+H+EID++HP + GFT ER++F A+L G D YR+L
Sbjct: 170 NVAHQEIDLAHP---------------ASNHHSAGFTDEERQKFTALLGAG-FTDTYRYL 213
Query: 150 HKEKDMDCGFSWSGN--PIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGS 207
H + ++W K RIDY++VS L R+ M G
Sbjct: 214 HPNQ--AGAYTWWAQRAVTSKANNSGWRIDYWLVSNRLNSRVKQSTMIDTGDR------R 265
Query: 208 DHCPVSLELS 217
DH P+ L+++
Sbjct: 266 DHAPILLDIT 275
>gi|385267001|ref|ZP_10045088.1| ExoA [Bacillus sp. 5B6]
gi|385151497|gb|EIF15434.1| ExoA [Bacillus sp. 5B6]
Length = 252
Score = 90.1 bits (222), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 59/190 (31%), Positives = 94/190 (49%), Gaps = 26/190 (13%)
Query: 28 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 86
++ +GRVI EFE +++N Y PN K R +W+ ++++ + KP+I C
Sbjct: 86 HDQEGRVITLEFENVFVVNCYTPNA--KRGLERIDYRLQWEADFKDYLQKLDRKKPVILC 143
Query: 87 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 146
GDLNV+H EID+ +P K + GF+ ER+ F A+L G D +
Sbjct: 144 GDLNVAHREIDLKNP---------------KANRKNAGFSEQEREAFSALLNAG-FTDTF 187
Query: 147 RFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYG 206
R+L+ +++ + WS + + R+DY IVS+ LK RI + G
Sbjct: 188 RYLYPDREGAYSW-WSYRTNAREKNIGWRLDYVIVSDRLKPRINQAAI------CADIMG 240
Query: 207 SDHCPVSLEL 216
SDHCPV + +
Sbjct: 241 SDHCPVEMTV 250
>gi|254445623|ref|ZP_05059099.1| exodeoxyribonuclease III [Verrucomicrobiae bacterium DG1235]
gi|198259931|gb|EDY84239.1| exodeoxyribonuclease III [Verrucomicrobiae bacterium DG1235]
Length = 251
Score = 90.1 bits (222), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 59/189 (31%), Positives = 95/189 (50%), Gaps = 27/189 (14%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIW 85
K++ +GRV+ AE+ F+++ Y PN + E R++WD+ +V + KP+I+
Sbjct: 86 KHDGEGRVVTAEYPEFFIVTVYTPNA--QNELRRLPYRQEWDRDFLAYVKALEATKPVIF 143
Query: 86 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 145
CGDLNV+H E D+++P K + GFT ER F I+ G +D
Sbjct: 144 CGDLNVAHTEDDLANP---------------KTNRKNAGFTDEERAGFDDIVAAG-FVDT 187
Query: 146 YRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 205
+R + K +S+ G + R RIDYF++SE L+ ++ + + L
Sbjct: 188 FREFTQGKGHYSWWSYRGG--ARSRNVGWRIDYFMISESLRPQLKSASI------LPEVL 239
Query: 206 GSDHCPVSL 214
GSDHCPV +
Sbjct: 240 GSDHCPVEM 248
>gi|456012224|gb|EMF45930.1| Exodeoxyribonuclease III [Planococcus halocryophilus Or1]
Length = 252
Score = 90.1 bits (222), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 60/189 (31%), Positives = 97/189 (51%), Gaps = 26/189 (13%)
Query: 29 EPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCG 87
+ +GR+I EF+ +Y++ Y PN+ + R W+ I FV KP++ CG
Sbjct: 87 DTEGRIITLEFDNYYVITVYTPNS--QHGLLRLDYRLLWEDAILSFVKALDNHKPVLLCG 144
Query: 88 DLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYR 147
DLNV+HEEID+ +P+ NK++ GFT+ ER + L++G +D +R
Sbjct: 145 DLNVAHEEIDLRNPK------------ANKKN---SGFTLEERGKMTQFLEKG-FVDTFR 188
Query: 148 FLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGS 207
H E++ + WS + + RIDYF+ S+ L +Q I ++ +GS
Sbjct: 189 HFHPEEEGHYSW-WSYRSNCREKNVGWRIDYFLASQRL-----VPALQSAKIHID-IWGS 241
Query: 208 DHCPVSLEL 216
DHCPV L++
Sbjct: 242 DHCPVELQV 250
>gi|213512198|ref|NP_001135227.1| DNA-(apurinic or apyrimidinic site) lyase [Salmo salar]
gi|197631957|gb|ACH70702.1| APEX nuclease 1 [Salmo salar]
gi|209154634|gb|ACI33549.1| DNA-apurinic or apyrimidinic site lyase [Salmo salar]
gi|209154684|gb|ACI33574.1| DNA-apurinic or apyrimidinic site lyase [Salmo salar]
Length = 312
Score = 90.1 bits (222), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 59/190 (31%), Positives = 95/190 (50%), Gaps = 26/190 (13%)
Query: 28 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWC 86
++ +GRVI AEF TF+L+ Y PN+G R+ WD + ++ KPL+ C
Sbjct: 146 HDKEGRVITAEFPTFFLVTAYVPNSG--RGLVRLDYRKTWDVEFKAYLSDLDKRKPLVLC 203
Query: 87 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 146
GDLNV+HEEID+ + +K + GFT ER+ F +L G D++
Sbjct: 204 GDLNVAHEEIDLKN---------------SKGNKKNAGFTAEEREGFNQLLAAG-FTDSF 247
Query: 147 RFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYG 206
R L+ E+ F W+ + + R+DYF++S L + +++ + G
Sbjct: 248 RELYPEQANAYTF-WTYMMNSRSKNVGWRLDYFVLSSALLPGLCDSKIRNQAM------G 300
Query: 207 SDHCPVSLEL 216
SDHCP++L +
Sbjct: 301 SDHCPITLHM 310
>gi|406672108|ref|ZP_11079342.1| exodeoxyribonuclease III (xth) [Facklamia hominis CCUG 36813]
gi|405579418|gb|EKB53524.1| exodeoxyribonuclease III (xth) [Facklamia hominis CCUG 36813]
Length = 275
Score = 90.1 bits (222), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 60/192 (31%), Positives = 94/192 (48%), Gaps = 33/192 (17%)
Query: 31 DGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWCGDL 89
+GR++ E E +L N Y PN G E R+ WD++ +++++ KP+I GD
Sbjct: 111 EGRILTLELEDLFLTNVYTPNAG--SELKRLADRQIWDQKYADYLVELDQQKPVIAMGDF 168
Query: 90 NVSHEEIDVSHP--EFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYR 147
NV+HEEID+++P F+A GFT ER+ F +L+ G D++R
Sbjct: 169 NVAHEEIDLANPASNHFSA-----------------GFTDEERQGFSRLLERG-FTDSFR 210
Query: 148 FLHKEKDMDCGFSWSGNPI--GKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 205
LH ++ ++W + K RIDYF+VS L+D+I M G
Sbjct: 211 HLHGP--VEGQYTWWAQRVKTSKINNSGWRIDYFVVSNRLRDQIKNSAMIDSGAR----- 263
Query: 206 GSDHCPVSLELS 217
DH P+ LE++
Sbjct: 264 -QDHTPILLEMT 274
>gi|328958150|ref|YP_004375536.1| apurinic/apyrimidinic endonuclease [Carnobacterium sp. 17-4]
gi|328674474|gb|AEB30520.1| apurinic/apyrimidinic endonuclease [Carnobacterium sp. 17-4]
Length = 253
Score = 90.1 bits (222), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 61/195 (31%), Positives = 97/195 (49%), Gaps = 28/195 (14%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIW 85
+++ +GRVI + +Y++ Y PN+ K E R +W+ Q ++ + S KP+I
Sbjct: 84 EHDQEGRVITLSYPNYYVVTCYTPNS--KSELKRLDYRMQWEDDFQLYLKKLDSEKPVIL 141
Query: 86 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 145
CGDLNV+HE ID+ + + +L+ GF+ ER +F A+L G ID
Sbjct: 142 CGDLNVAHENIDLKN---WKTNQLSA------------GFSKEERMKFSALLDAG-FIDT 185
Query: 146 YRFLHKEKDMDCGFSWSGNPIGKYRGKR-MRIDYFIVSEELKDRIIACEMQGHGIELEGF 204
+R+ + D++ ++W + RIDYF VS L+D + + L+
Sbjct: 186 FRYFY--PDLEGAYTWWNYRFNARKTNAGWRIDYFCVSTRLQDHLQEARI------LDDI 237
Query: 205 YGSDHCPVSLELSEA 219
GSDHCPV L L E
Sbjct: 238 VGSDHCPVELILKET 252
>gi|379726888|ref|YP_005319073.1| exodeoxyribonuclease III [Melissococcus plutonius DAT561]
gi|376317791|dbj|BAL61578.1| exodeoxyribonuclease III [Melissococcus plutonius DAT561]
Length = 254
Score = 90.1 bits (222), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 59/198 (29%), Positives = 100/198 (50%), Gaps = 26/198 (13%)
Query: 20 HFLLSALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC- 78
++ L+ +++ +GR++ E+ FYL+N Y PN+ + E R W+ ++++++
Sbjct: 77 YYGLNMEEHDQEGRLLTLEYPNFYLVNCYTPNS--QPELKRLAYRMTWENAFRDYLIKLK 134
Query: 79 SGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILK 138
S KP+I CGDLNV+H+ ID+ + + + GF+ ER++ +L
Sbjct: 135 SKKPVILCGDLNVAHQPIDLKNW---------------RTNQHSAGFSPEEREKMTQLLD 179
Query: 139 EGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHG 198
G ID YR+ + +K+ + WS + RIDYFIVS+ LK + +
Sbjct: 180 NG-FIDTYRYFYPDKEGVYSW-WSYRFNARKNNAGWRIDYFIVSDNLKPTLKEATIYTE- 236
Query: 199 IELEGFYGSDHCPVSLEL 216
GSDHCPV +EL
Sbjct: 237 -----ITGSDHCPVGVEL 249
>gi|374338532|ref|YP_005095247.1| Exodeoxyribonuclease III [Streptococcus macedonicus ACA-DC 198]
gi|372284647|emb|CCF02936.1| Exodeoxyribonuclease III [Streptococcus macedonicus ACA-DC 198]
Length = 276
Score = 90.1 bits (222), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 57/191 (29%), Positives = 92/191 (48%), Gaps = 29/191 (15%)
Query: 29 EPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCG 87
+ +GR+I EF+ F++ Y PN G + R+ WD++ +++ + KP++ G
Sbjct: 110 DSEGRIITLEFDKFFVTQVYTPNAG--DGLKRLAERQIWDEKYADYLAELDQVKPVLATG 167
Query: 88 DLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYR 147
D NV+H+EID++HP N+ PGFT ER F +L +G D +R
Sbjct: 168 DYNVAHKEIDLAHPS------------SNRR---SPGFTDEERAGFTNLLAKG-FTDTFR 211
Query: 148 FLHKEKDMDCGFSW--SGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 205
++H D+ +SW + K RIDY++ S + D+I EM G
Sbjct: 212 YIH--GDVPGVYSWWAQRSKTSKINNSGWRIDYWLTSSRIADKITKSEMIDSGAR----- 264
Query: 206 GSDHCPVSLEL 216
DH P+ LE+
Sbjct: 265 -QDHTPIVLEI 274
>gi|323490286|ref|ZP_08095501.1| exodeoxyribonuclease III [Planococcus donghaensis MPA1U2]
gi|323395956|gb|EGA88787.1| exodeoxyribonuclease III [Planococcus donghaensis MPA1U2]
Length = 251
Score = 90.1 bits (222), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 60/189 (31%), Positives = 98/189 (51%), Gaps = 26/189 (13%)
Query: 29 EPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCG 87
+ +GR+I EF+++Y++ Y PN+ + R W++ I FV KP++ CG
Sbjct: 86 DTEGRIITLEFDSYYVITVYTPNS--QHGLLRLDYRLLWEEAILSFVKTLDNHKPVLLCG 143
Query: 88 DLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYR 147
DLNV+HEEID+ +P+ NK++ GFT ER + L+ G +D +R
Sbjct: 144 DLNVAHEEIDLKNPK------------ANKKN---SGFTPEERSKMTQFLESG-FVDTFR 187
Query: 148 FLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGS 207
+ + E++ + WS + + RIDYF+ S+ L E+Q I + +GS
Sbjct: 188 YFYPEEEGHYSW-WSYRSNCREKNVGWRIDYFLASQRL-----VPELQNAKIH-KDIWGS 240
Query: 208 DHCPVSLEL 216
DHCPV L++
Sbjct: 241 DHCPVELQI 249
>gi|306834074|ref|ZP_07467194.1| exodeoxyribonuclease III [Streptococcus bovis ATCC 700338]
gi|304423647|gb|EFM26793.1| exodeoxyribonuclease III [Streptococcus bovis ATCC 700338]
Length = 275
Score = 90.1 bits (222), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 57/191 (29%), Positives = 92/191 (48%), Gaps = 29/191 (15%)
Query: 29 EPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCG 87
+ +GR+I EF+ F++ Y PN G + R+ WD++ +++ + KP++ G
Sbjct: 109 DSEGRIITLEFDKFFVTQVYTPNAG--DGLKRLAERQIWDEKYADYLTELDQVKPVLATG 166
Query: 88 DLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYR 147
D NV+H+EID++HP N+ PGFT ER F +L +G D +R
Sbjct: 167 DYNVAHKEIDLAHPS------------SNRR---SPGFTDEERAGFTNLLAKG-FTDTFR 210
Query: 148 FLHKEKDMDCGFSW--SGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 205
++H D+ +SW + K RIDY++ S + D+I EM G
Sbjct: 211 YIH--GDIPDVYSWWAQRSKTSKINNSGWRIDYWLTSSRIADKITKSEMIDSGAR----- 263
Query: 206 GSDHCPVSLEL 216
DH P+ LE+
Sbjct: 264 -QDHTPIVLEI 273
>gi|345861274|ref|ZP_08813541.1| exodeoxyribonuclease III [Desulfosporosinus sp. OT]
gi|344325629|gb|EGW37140.1| exodeoxyribonuclease III [Desulfosporosinus sp. OT]
Length = 250
Score = 90.1 bits (222), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 60/191 (31%), Positives = 95/191 (49%), Gaps = 26/191 (13%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIW 85
+++ +GRVI EF +Y++ Y PN+ + + R KW++ ++ + KP+I
Sbjct: 84 EHDQEGRVITLEFGEYYVVTVYTPNS--QRGLARLEYRMKWEEDFLNYLKDLENSKPVIV 141
Query: 86 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 145
CGDLNV+H EID+ +P N+++ GF+ ER +F ++ G +D
Sbjct: 142 CGDLNVAHTEIDLKNP------------STNRKN---AGFSAEERNKFDELMNNG-FVDT 185
Query: 146 YRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 205
+RF + K + WS + RIDYF VS LKD++ I +
Sbjct: 186 FRFFYPNK-TEAYTWWSYMFNARANNAGWRIDYFCVSAGLKDQL------KEAIIYKNVL 238
Query: 206 GSDHCPVSLEL 216
GSDHCPV LE+
Sbjct: 239 GSDHCPVGLEI 249
>gi|312898827|ref|ZP_07758215.1| exodeoxyribonuclease III [Megasphaera micronuciformis F0359]
gi|310619989|gb|EFQ03561.1| exodeoxyribonuclease III [Megasphaera micronuciformis F0359]
Length = 250
Score = 90.1 bits (222), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 59/189 (31%), Positives = 91/189 (48%), Gaps = 26/189 (13%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIW 85
+++ +GR+I EFE FY + Y PN+ + E R +W+ + +V + + KP+I+
Sbjct: 84 EHDHEGRLITLEFEDFYFITCYTPNS--QSELARLDYRMRWEDDFRNYVTELNRTKPVIF 141
Query: 86 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 145
CGDLNV+HEEID+ +P K + GF+ ER + +L G D
Sbjct: 142 CGDLNVAHEEIDLKNP---------------KTNRKNAGFSDEERAKMTELLAAG-FTDT 185
Query: 146 YRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 205
+R+ + +K+ + WS + RIDYFI S L R+ +
Sbjct: 186 WRYFYPDKEGVYSW-WSYRFKARQNNSGWRIDYFITSSALDSRL------KEALIYTNIE 238
Query: 206 GSDHCPVSL 214
GSDHCPV L
Sbjct: 239 GSDHCPVGL 247
>gi|418965268|ref|ZP_13517046.1| putative exodeoxyribonuclease III [Streptococcus constellatus
subsp. constellatus SK53]
gi|383342863|gb|EID21064.1| putative exodeoxyribonuclease III [Streptococcus constellatus
subsp. constellatus SK53]
Length = 275
Score = 90.1 bits (222), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 57/191 (29%), Positives = 89/191 (46%), Gaps = 29/191 (15%)
Query: 29 EPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCG 87
+ +GR+I EF+ F++ Y PN G + R+ WDK+ +++ KP++ G
Sbjct: 109 DSEGRIITLEFDNFFVTQVYTPNAG--DGLKRLVERQVWDKKYADYLTALDIEKPVLATG 166
Query: 88 DLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYR 147
D NV+H EID++HP N+ PGFT ER F +L G D +R
Sbjct: 167 DYNVAHNEIDLAHPS------------SNRR---SPGFTDEERSGFTNLLNRG-FTDTFR 210
Query: 148 FLHKEKDMDCGFSW--SGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 205
++H D+ +SW + K RIDY++ S + D++ EM G
Sbjct: 211 YIH--GDIPNVYSWWAQRSKTSKINNSGWRIDYWLTSNRIADKVTKSEMIDSGTR----- 263
Query: 206 GSDHCPVSLEL 216
DH P+ LE+
Sbjct: 264 -QDHTPIVLEI 273
>gi|452820422|gb|EME27464.1| exodeoxyribonuclease III [Galdieria sulphuraria]
Length = 307
Score = 90.1 bits (222), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 54/186 (29%), Positives = 89/186 (47%), Gaps = 24/186 (12%)
Query: 32 GRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCGDLN 90
GR+I+AE+E FY+ + Y PN+G K + + R WD ++ + KP++ GDLN
Sbjct: 142 GRLIVAEYENFYVASVYVPNSGDKLKNLEY-RVHSWDPSFCSYICELQMKKPIVLLGDLN 200
Query: 91 VSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLH 150
V+H++IDV PE + + GF +ER F L+E +++D++R+L+
Sbjct: 201 VAHQDIDVYAPERLGS---------------KAGFVQSERNNFSKFLEETKMVDSFRYLY 245
Query: 151 KEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHC 210
+ F W G+ R + RIDY L+ GSDHC
Sbjct: 246 PHRKEAYSF-WDYKTGGRLRNQGWRIDY------CLLSSSLVSNLVDAFILDKIEGSDHC 298
Query: 211 PVSLEL 216
P+ +++
Sbjct: 299 PIGIQM 304
>gi|42519716|ref|NP_965646.1| exodeoxyribonuclease A [Lactobacillus johnsonii NCC 533]
gi|41584005|gb|AAS09612.1| exodeoxyribonuclease A [Lactobacillus johnsonii NCC 533]
Length = 261
Score = 90.1 bits (222), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 58/187 (31%), Positives = 93/187 (49%), Gaps = 26/187 (13%)
Query: 31 DGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGDL 89
+GR I EF FY +N P +G K + F R W + + +V + KP+I GD+
Sbjct: 95 EGRSITLEFSNFYFINVQVPFSGEKLQRLDF--RELWAQTFRNYVTKLMQYKPVIIGGDM 152
Query: 90 NVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFL 149
+V+HE ID++ P+ ++ +PGFT ERK F +L G ID +R+
Sbjct: 153 SVAHERIDLAEPD---------------DNHHRPGFTGIERKEFSELLNAG-FIDTFRYF 196
Query: 150 HKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDH 209
H ++ +S+ + R+DYF+VS L+DR+ ++ L GSDH
Sbjct: 197 HPDEAKYTYWSYRDKE-ARAENLGWRLDYFLVSNNLEDRLTNAKI------LSNIMGSDH 249
Query: 210 CPVSLEL 216
CP+ L++
Sbjct: 250 CPIELDV 256
>gi|417002268|ref|ZP_11941657.1| exodeoxyribonuclease III [Anaerococcus prevotii ACS-065-V-Col13]
gi|325479409|gb|EGC82505.1| exodeoxyribonuclease III [Anaerococcus prevotii ACS-065-V-Col13]
Length = 273
Score = 90.1 bits (222), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 60/192 (31%), Positives = 92/192 (47%), Gaps = 35/192 (18%)
Query: 31 DGRVILAEFETFYLLNTYAPNNGWKEEENSFQR---RRKWDKRIQEFVLQCSG-KPLIWC 86
+GR++ EF+ FY Y PN G N R R+ WD++ +++ KP+I
Sbjct: 111 EGRIVTLEFDDFYFTQVYTPNAG-----NGLVRLADRQIWDEKYADYLEGLDKIKPVIAS 165
Query: 87 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 146
GD NV+H ID++HPE N ++ PGFT ER+ F +L G D +
Sbjct: 166 GDFNVAHTPIDLAHPE-------NNHI--------SPGFTDEEREGFTRLLARG-FTDTF 209
Query: 147 RFLHKEKDMDCGFSWSGNPI--GKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGF 204
R H KD++ ++W + K RIDYF+VS+ L +R+ + + G
Sbjct: 210 R--HLNKDLEGAYTWWAQRVKTSKINNSGWRIDYFLVSDRLMERVKSSTIINSGDR---- 263
Query: 205 YGSDHCPVSLEL 216
DH P+ LE+
Sbjct: 264 --QDHTPIMLEI 273
>gi|90962461|ref|YP_536377.1| exodeoxyribonuclease III [Lactobacillus salivarius UCC118]
gi|301299216|ref|ZP_07205503.1| exodeoxyribonuclease III [Lactobacillus salivarius ACS-116-V-Col5a]
gi|90821655|gb|ABE00294.1| Exodeoxyribonuclease III [Lactobacillus salivarius UCC118]
gi|300853176|gb|EFK80773.1| exodeoxyribonuclease III [Lactobacillus salivarius ACS-116-V-Col5a]
Length = 275
Score = 90.1 bits (222), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 57/192 (29%), Positives = 94/192 (48%), Gaps = 29/192 (15%)
Query: 29 EPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWCG 87
+ +GR+I EF++FY+ Y PN G + R+ WD++ ++++ KPL+ G
Sbjct: 109 DSEGRIITLEFDSFYVTQVYTPNAG--DGLRRLAERQVWDEKYADYLVSLDQNKPLLSSG 166
Query: 88 DLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYR 147
D NV+H+EID++HP + GFT ER F +L +G D +R
Sbjct: 167 DFNVAHKEIDLAHP---------------GNNHHSAGFTDEERAGFTNLLNKG-FTDTFR 210
Query: 148 FLHKEKDMDCGFSW--SGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 205
++H D+ +SW + K RIDY++ S + D+I+ EM L+
Sbjct: 211 YVH--GDVKDVYSWWAQRSRTSKINNSGWRIDYWLASNRIADKIVRSEM------LDSGE 262
Query: 206 GSDHCPVSLELS 217
DH P+ LE++
Sbjct: 263 RRDHTPIVLEIN 274
>gi|170088468|ref|XP_001875457.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164650657|gb|EDR14898.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 343
Score = 90.1 bits (222), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 62/197 (31%), Positives = 98/197 (49%), Gaps = 24/197 (12%)
Query: 32 GRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWCGDLN 90
GR+I EFE FY++ TY N G + + +++W+ ++ S KP+IW GDLN
Sbjct: 155 GRIITLEFENFYVVGTYVVNAG--TDLKTLDEKKEWNVHFDAYIRDLDSKKPVIWTGDLN 212
Query: 91 VSHEEIDV--SH---PEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKE------ 139
V+ E+ + +H P AA L P K+ G+T AE F IL
Sbjct: 213 VAPTEMGMYCNHPFGPRLITAADLAN---PKKKWNKTAGYTEAETTAFRKILASPDDISA 269
Query: 140 GRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGI 199
+ +D +R LH E FS+ N + +G R+D F++SE + +R+ CE++
Sbjct: 270 NKFVDVWRQLHPEDRHYTYFSYRFN--CRTKGLGWRLDMFVLSERMMERVKMCEIRS--- 324
Query: 200 ELEGFYGSDHCPVSLEL 216
E + SDHCP+ +E+
Sbjct: 325 --EIYGASDHCPLVMEI 339
>gi|288560813|ref|YP_003424299.1| exodeoxyribonuclease III Xth2 [Methanobrevibacter ruminantium M1]
gi|288543523|gb|ADC47407.1| exodeoxyribonuclease III Xth2 [Methanobrevibacter ruminantium M1]
Length = 258
Score = 90.1 bits (222), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 63/192 (32%), Positives = 95/192 (49%), Gaps = 27/192 (14%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFV--LQCSGKPLI 84
K++ +GR+I +F+ F LLN Y PN G EE Q + + ++ L+ GK L+
Sbjct: 90 KFDIEGRLIRLDFDDFTLLNIYYPNGGRDEER--LQYKLDFYDAFLDYANDLRDQGKNLV 147
Query: 85 WCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLID 144
CGDLN +H+EID++ P K++ GF ER+ L G +D
Sbjct: 148 ICGDLNTAHKEIDLARP---------------KQNEDVSGFLPIEREWVSKFLDNG-YVD 191
Query: 145 AYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGF 204
+R LH E + + WS + R R+DYF V+EE KD + A + +
Sbjct: 192 TFRMLH-ENEKEKYTWWSYRTRARERNVGWRLDYFFVNEEFKDNVRASYI------ISEV 244
Query: 205 YGSDHCPVSLEL 216
GSDHCP++LE+
Sbjct: 245 MGSDHCPIALEI 256
>gi|433449048|ref|ZP_20411913.1| exodeoxyribonuclease III [Weissella ceti NC36]
gi|429539437|gb|ELA07474.1| exodeoxyribonuclease III [Weissella ceti NC36]
Length = 275
Score = 90.1 bits (222), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 59/193 (30%), Positives = 90/193 (46%), Gaps = 29/193 (15%)
Query: 29 EPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCG 87
+ +GR++ EFE ++ Y PN+G E + R+ WD + Q ++ KP+I+ G
Sbjct: 106 DTEGRILTLEFENAFVSTVYTPNSG--RELARLEDRQGWDAKYQAYIESLDAIKPVIFSG 163
Query: 88 DLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYR 147
D+NV+HE ID+ +P K + GFT ER F ++L G +D +R
Sbjct: 164 DMNVAHESIDLKNP---------------KANRRSAGFTDEERAGFTSLLSAG-FVDTFR 207
Query: 148 FLHKEKDMDCGFSW--SGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 205
F H D +SW + K RIDY++VS+ L D I + G
Sbjct: 208 FQH--PDTIEAYSWWAQMSKTSKINNTGWRIDYYLVSQRLADNIDETSILNTGDR----- 260
Query: 206 GSDHCPVSLELSE 218
DH PV+L L +
Sbjct: 261 -QDHAPVTLSLKD 272
>gi|449944367|ref|ZP_21806724.1| putative exodeoxyribonuclease III [Streptococcus mutans 11A1]
gi|449148594|gb|EMB52451.1| putative exodeoxyribonuclease III [Streptococcus mutans 11A1]
Length = 275
Score = 89.7 bits (221), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 57/189 (30%), Positives = 92/189 (48%), Gaps = 29/189 (15%)
Query: 31 DGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGDL 89
+GR+I EF+ F++ Y PN G + R+ WD++ ++ Q KP++ GD
Sbjct: 111 EGRIITLEFDDFFVTQVYTPNAG--DGLKRLDDRQIWDEKYAIYLAQLDKQKPVLATGDY 168
Query: 90 NVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFL 149
NV+H+EID++HP + PGFT ER F +L++G D +R++
Sbjct: 169 NVAHKEIDLAHPS---------------SNRCSPGFTDEERAGFTHLLEQG-FTDTFRYI 212
Query: 150 HKEKDMDCGFSW--SGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGS 207
H D+ +SW + K RIDY+++S L D+I+ EM G
Sbjct: 213 H--GDVPNVYSWWAQRSKTSKINNSGWRIDYWLISNRLSDKILKSEMIDSGTR------Q 264
Query: 208 DHCPVSLEL 216
DH P+ L++
Sbjct: 265 DHTPILLKI 273
>gi|441499473|ref|ZP_20981659.1| Exodeoxyribonuclease III [Fulvivirga imtechensis AK7]
gi|441437006|gb|ELR70364.1| Exodeoxyribonuclease III [Fulvivirga imtechensis AK7]
Length = 258
Score = 89.7 bits (221), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 66/192 (34%), Positives = 98/192 (51%), Gaps = 28/192 (14%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIW 85
+++ +GRVI AEF+ F+L+N Y PN+G + N + R+ WD + KP++
Sbjct: 91 EHDQEGRVITAEFDHFFLVNVYTPNSG--QGLNRLEYRQAWDVIFLNHLRSLEQRKPVVL 148
Query: 86 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 145
CGDLNV+HEEID+ A AK N NK G+T E F + L+ G +D
Sbjct: 149 CGDLNVAHEEIDI------ARAKQN----YNKS----AGYTQQEIDGFKSYLEHG-FVDT 193
Query: 146 YRFLHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGF 204
+R E + ++ W+ + R RIDYF+VS L ++ + + F
Sbjct: 194 FRHFFPE---EVKYTYWNQMFNSRARNVGWRIDYFLVSPALLGQVKTAAIH------DQF 244
Query: 205 YGSDHCPVSLEL 216
+GSDHCPV L L
Sbjct: 245 HGSDHCPVELVL 256
>gi|395241403|ref|ZP_10418415.1| Exodeoxyribonuclease [Lactobacillus pasteurii CRBIP 24.76]
gi|394481324|emb|CCI84655.1| Exodeoxyribonuclease [Lactobacillus pasteurii CRBIP 24.76]
Length = 275
Score = 89.7 bits (221), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 57/189 (30%), Positives = 93/189 (49%), Gaps = 29/189 (15%)
Query: 31 DGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIWCGDL 89
+GR+I EF+ FY+ Y PN G R++WD++ ++ + K P++ GD
Sbjct: 111 EGRIITLEFDDFYVTQVYTPNAG--SGLKRLAERQEWDQKYIAYLKELDAKKPVLASGDY 168
Query: 90 NVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFL 149
N +HEEID+ HPE + GFT ER F +L+ G D++R +
Sbjct: 169 NCAHEEIDLKHPE---------------NNHHSAGFTDEERAGFSQLLEAG-FTDSFRKI 212
Query: 150 HKEKDMDCGFSWSGNPI--GKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGS 207
H +++ +SW + K RIDY++ S+ + D+II+ +M G +
Sbjct: 213 H--GNVEGVYSWWAQRVKTAKANNSGWRIDYWLTSDRISDKIISSDMVDTGDR------A 264
Query: 208 DHCPVSLEL 216
DHCP+ LE+
Sbjct: 265 DHCPIVLEI 273
>gi|288905926|ref|YP_003431148.1| 3'-exo-deoxyribonuclease [Streptococcus gallolyticus UCN34]
gi|306831945|ref|ZP_07465100.1| exodeoxyribonuclease III [Streptococcus gallolyticus subsp.
gallolyticus TX20005]
gi|325978892|ref|YP_004288608.1| exodeoxyribonuclease III [Streptococcus gallolyticus subsp.
gallolyticus ATCC BAA-2069]
gi|336064803|ref|YP_004559662.1| exodeoxyribonuclease III [Streptococcus pasteurianus ATCC 43144]
gi|386338368|ref|YP_006034537.1| exodeoxyribonuclease III [Streptococcus gallolyticus subsp.
gallolyticus ATCC 43143]
gi|288732652|emb|CBI14224.1| putative 3'-exo-deoxyribonuclease [Streptococcus gallolyticus
UCN34]
gi|304425871|gb|EFM28988.1| exodeoxyribonuclease III [Streptococcus gallolyticus subsp.
gallolyticus TX20005]
gi|325178820|emb|CBZ48864.1| exodeoxyribonuclease III [Streptococcus gallolyticus subsp.
gallolyticus ATCC BAA-2069]
gi|334281004|dbj|BAK28578.1| exodeoxyribonuclease III [Streptococcus gallolyticus subsp.
gallolyticus ATCC 43143]
gi|334283003|dbj|BAK30576.1| exodeoxyribonuclease III [Streptococcus pasteurianus ATCC 43144]
Length = 275
Score = 89.7 bits (221), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 57/191 (29%), Positives = 92/191 (48%), Gaps = 29/191 (15%)
Query: 29 EPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCG 87
+ +GR+I EF+ F++ Y PN G + R+ WD++ +++ + KP++ G
Sbjct: 109 DSEGRIITLEFDKFFVTQVYTPNAG--DGLKRLAERQIWDEKYADYLAELDQVKPVLATG 166
Query: 88 DLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYR 147
D NV+H+EID++HP N+ PGFT ER F +L +G D +R
Sbjct: 167 DYNVAHKEIDLAHPS------------SNRR---SPGFTDEERAGFTNLLAKG-FTDTFR 210
Query: 148 FLHKEKDMDCGFSW--SGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 205
++H D+ +SW + K RIDY++ S + D+I EM G
Sbjct: 211 YIH--GDIPDVYSWWAQRSKTSKINNSGWRIDYWLTSSRIADKITKSEMIDSGAR----- 263
Query: 206 GSDHCPVSLEL 216
DH P+ LE+
Sbjct: 264 -QDHTPIVLEI 273
>gi|449437801|ref|XP_004136679.1| PREDICTED: apurinic endonuclease-redox protein-like [Cucumis
sativus]
Length = 501
Score = 89.7 bits (221), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 59/200 (29%), Positives = 99/200 (49%), Gaps = 27/200 (13%)
Query: 19 FHFLLSALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC 78
+ L +++ +GRV++ EF++F+LLN Y PN+G + S+ R +WD + ++ +
Sbjct: 325 VRYGLGISEHDGEGRVVMVEFDSFFLLNVYVPNSGDGLKRLSY-RITQWDPSLSNYIKEL 383
Query: 79 -SGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAIL 137
KP+I GDLN +H+EID+ +P + GFT ER+ F
Sbjct: 384 EKSKPVILTGDLNCAHQEIDLYNPA---------------GNRKSAGFTNEERQSFETNF 428
Query: 138 KEGRLIDAYRFLHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQG 196
+ +D +R H + G++ W G+ K R+DYF+VSE + +++ +
Sbjct: 429 LQKGFVDTFRQKHPDV---VGYTYWGYRHGGRKTNKGWRLDYFLVSERVAEKVHDSYI-- 483
Query: 197 HGIELEGFYGSDHCPVSLEL 216
L GSDHCP+ L L
Sbjct: 484 ----LPDVGGSDHCPIGLVL 499
>gi|323483337|ref|ZP_08088727.1| hypothetical protein HMPREF9474_00476 [Clostridium symbiosum
WAL-14163]
gi|323691163|ref|ZP_08105441.1| exodeoxyribonuclease III [Clostridium symbiosum WAL-14673]
gi|355627198|ref|ZP_09049134.1| exodeoxyribonuclease [Clostridium sp. 7_3_54FAA]
gi|323403435|gb|EGA95743.1| hypothetical protein HMPREF9474_00476 [Clostridium symbiosum
WAL-14163]
gi|323504773|gb|EGB20557.1| exodeoxyribonuclease III [Clostridium symbiosum WAL-14673]
gi|354820443|gb|EHF04859.1| exodeoxyribonuclease [Clostridium sp. 7_3_54FAA]
Length = 251
Score = 89.7 bits (221), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 60/188 (31%), Positives = 95/188 (50%), Gaps = 26/188 (13%)
Query: 28 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWC 86
++ +GRVI AEF +Y++ Y PN+ ++ R +W+ ++ + KP+I+C
Sbjct: 86 HDHEGRVITAEFPDYYVITCYTPNS--QDGLARLPYRMQWEDDFLSYLKKLEEHKPVIFC 143
Query: 87 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 146
GDLNV+H EID+ +P K + GFT ER +F +L+ G ID Y
Sbjct: 144 GDLNVAHREIDLKNP---------------KSNRKNAGFTDEERGKFTQLLESG-FIDTY 187
Query: 147 RFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYG 206
R + +++ + WS + + RIDYF VS+ L+DR+ + + G
Sbjct: 188 RHFYPDQEGIYSW-WSYRFKAREKNAGWRIDYFCVSKALEDRLESAMIHTE------IMG 240
Query: 207 SDHCPVSL 214
SDHCPV L
Sbjct: 241 SDHCPVEL 248
>gi|307566413|ref|ZP_07628850.1| exodeoxyribonuclease III [Prevotella amnii CRIS 21A-A]
gi|307344885|gb|EFN90285.1| exodeoxyribonuclease III [Prevotella amnii CRIS 21A-A]
Length = 249
Score = 89.7 bits (221), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 60/193 (31%), Positives = 98/193 (50%), Gaps = 31/193 (16%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIW 85
+++ +GRVI E FYL+ Y PN+ +++ R +W+ Q ++ KP+I
Sbjct: 84 EHDHEGRVITLEMADFYLVTVYTPNS--QDQLKRLPYRMQWETDFQSYLHSLDKHKPVIV 141
Query: 86 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 145
CGD+NV+HEEID+ +P K + GF+ ER++ +L G D
Sbjct: 142 CGDMNVAHEEIDLKNP---------------KSNHFNAGFSDEEREKMTTLLSNG-FTDT 185
Query: 146 YRFLHKEKDMDCGFSWSGNPIGKYRGKRM--RIDYFIVSEELKDRIIACEMQGHGIELEG 203
+RFL+ E+ +SW K R K + RIDYF++S+ L++ + ++ +
Sbjct: 186 FRFLYPEQ---VTYSWWSYRF-KAREKNIGWRIDYFLISDRLRESLEEAKIHTEIL---- 237
Query: 204 FYGSDHCPVSLEL 216
GSDHCPV + L
Sbjct: 238 --GSDHCPVEIIL 248
>gi|313891277|ref|ZP_07824895.1| exodeoxyribonuclease III [Streptococcus pseudoporcinus SPIN 20026]
gi|416852294|ref|ZP_11909439.1| exodeoxyribonuclease III [Streptococcus pseudoporcinus LQ 940-04]
gi|313120344|gb|EFR43465.1| exodeoxyribonuclease III [Streptococcus pseudoporcinus SPIN 20026]
gi|356739783|gb|EHI65015.1| exodeoxyribonuclease III [Streptococcus pseudoporcinus LQ 940-04]
Length = 275
Score = 89.7 bits (221), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 60/214 (28%), Positives = 98/214 (45%), Gaps = 29/214 (13%)
Query: 6 CLFYVCLCNNSSVFHFLLSALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRR 65
Y N F + + + +GR+I EFE F++ Y PN G + R+
Sbjct: 86 MFLYKQTLNPVVTFPEIGAPTTMDSEGRIITLEFEDFFVTQVYTPNAG--DGLRRLADRQ 143
Query: 66 KWDKRIQEFVLQCSG-KPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPG 124
+WD + +++ Q KP++ GD NV+H+EID+++P N+ G
Sbjct: 144 EWDIKYADYLTQLDAQKPVLATGDYNVAHKEIDLANPS------------SNRR---SAG 188
Query: 125 FTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSW--SGNPIGKYRGKRMRIDYFIVS 182
FT ER F A+L++G D +R LH D+ ++W + K RIDY++ S
Sbjct: 189 FTDEERAGFTALLEKG-FTDTFRHLH--GDLPNVYTWWAQRSKTSKMNNTGWRIDYWLTS 245
Query: 183 EELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 216
+ D+++ EM G DH P+ LE+
Sbjct: 246 NRIADKVLKSEMIDSGAR------QDHTPILLEI 273
>gi|139439406|ref|ZP_01772847.1| Hypothetical protein COLAER_01867 [Collinsella aerofaciens ATCC
25986]
gi|133775185|gb|EBA39005.1| exodeoxyribonuclease III [Collinsella aerofaciens ATCC 25986]
Length = 272
Score = 89.7 bits (221), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 63/190 (33%), Positives = 93/190 (48%), Gaps = 30/190 (15%)
Query: 31 DGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC---SGKPLIWCG 87
+GRV EF+ F+ ++ Y PN + E R WD + F+ +GKP++ CG
Sbjct: 107 EGRVCALEFDKFWFVDVYTPNA--QNELARIDVRMAWDDAYRGFLNALERETGKPVVTCG 164
Query: 88 DLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYR 147
D NV+HEEID+ +P K + G GF+ ER +F +L G D +R
Sbjct: 165 DFNVAHEEIDLKNP---------------KSNRGNAGFSDEERGKFTELLNAG-FTDTWR 208
Query: 148 FLHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYG 206
D++ +S WS + RIDYF+VS+ IA ++ GI + +G
Sbjct: 209 --AANPDVEGVYSWWSYRFNARKNNAGWRIDYFLVSDS-----IAANVRDTGIRGD-IFG 260
Query: 207 SDHCPVSLEL 216
SDHCPV+L L
Sbjct: 261 SDHCPVTLTL 270
>gi|319939581|ref|ZP_08013940.1| exodeoxyribonuclease III [Streptococcus anginosus 1_2_62CV]
gi|319811170|gb|EFW07476.1| exodeoxyribonuclease III [Streptococcus anginosus 1_2_62CV]
Length = 275
Score = 89.7 bits (221), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 56/191 (29%), Positives = 89/191 (46%), Gaps = 29/191 (15%)
Query: 29 EPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCG 87
+ +GR+I EF+ F++ Y PN G + R+ WD++ +++ KP++ G
Sbjct: 109 DAEGRIITLEFDNFFVTQVYTPNAG--DGLKRLVERQVWDQKYADYLTTLDEKKPVLATG 166
Query: 88 DLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYR 147
D NV+H EID++HP N+ PGFT ER F +L G D +R
Sbjct: 167 DYNVAHNEIDLAHPS------------SNRR---SPGFTDEERSGFTNLLNRG-FTDTFR 210
Query: 148 FLHKEKDMDCGFSW--SGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 205
++H D+ +SW + K RIDY++ S + D++ EM G
Sbjct: 211 YIH--GDIPNVYSWWAQRSKTSKINNSGWRIDYWLTSNRIADKVTKSEMIDSGTR----- 263
Query: 206 GSDHCPVSLEL 216
DH P+ LE+
Sbjct: 264 -QDHTPIVLEI 273
>gi|366090151|ref|ZP_09456517.1| exodeoxyribonuclease [Lactobacillus acidipiscis KCTC 13900]
Length = 275
Score = 89.7 bits (221), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 59/191 (30%), Positives = 93/191 (48%), Gaps = 29/191 (15%)
Query: 29 EPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWCG 87
+ +GR+ EFE ++ Y PN+G K + R+ WD++ E++ KP+I G
Sbjct: 109 DQEGRITTLEFEKCFVTQVYTPNSGNKLDR--LSDRQVWDQKYIEYLQTLDQQKPVISSG 166
Query: 88 DLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYR 147
D N +HEEID++HP+ + GFT ER F +L+ G D++R
Sbjct: 167 DFNCAHEEIDLAHPD---------------RNHRSAGFTDEERIDFTKLLESG-FNDSFR 210
Query: 148 FLHKEKDMDCGFSWSGNPI--GKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 205
+H ++ +SW + K RIDY++VS+ +KD+II EM G
Sbjct: 211 TVH--GNVTGAYSWWAQRVKTSKTNNSGWRIDYYLVSDRIKDKIIKSEMIDSGTR----- 263
Query: 206 GSDHCPVSLEL 216
DH P+ LE+
Sbjct: 264 -QDHTPIYLEI 273
>gi|311032922|ref|ZP_07711012.1| exodeoxyribonuclease III [Bacillus sp. m3-13]
Length = 254
Score = 89.7 bits (221), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 64/191 (33%), Positives = 92/191 (48%), Gaps = 26/191 (13%)
Query: 29 EPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFV-LQCSGKPLIWCG 87
EP+GR++ E+E F+L+N Y PN+ + + R W+ R ++ + K +I CG
Sbjct: 89 EPEGRILTLEYEDFFLVNVYTPNS--QRDLARLPFRLDWEDRFLAYIKMLDQQKSVIVCG 146
Query: 88 DLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYR 147
DLNV+H EID+ +P K + GFT ER + +L EG D +R
Sbjct: 147 DLNVAHAEIDLKNP---------------KSNRNNSGFTEEERGKMTRLLGEG-FSDTFR 190
Query: 148 FLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGS 207
+ E D WS + R RIDYFIVS+ LK + E+ GS
Sbjct: 191 HFYPEL-TDKYTWWSYMNKVRERNIGWRIDYFIVSDNLKGSLKDAEIHSD------IMGS 243
Query: 208 DHCPVSLELSE 218
DHCPV L L++
Sbjct: 244 DHCPVVLILNK 254
>gi|417092680|ref|ZP_11957296.1| exodeoxyribonuclease [Streptococcus suis R61]
gi|353532359|gb|EHC02031.1| exodeoxyribonuclease [Streptococcus suis R61]
Length = 275
Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 58/191 (30%), Positives = 95/191 (49%), Gaps = 29/191 (15%)
Query: 29 EPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWCG 87
+ +GR+I EF+ FY+ Y PN G + R+ WD + E++ Q S KP++ G
Sbjct: 109 DSEGRIITLEFDDFYVTQVYTPNAG--DGLKRLADRQIWDVQYAEYLSQLDSQKPVLATG 166
Query: 88 DLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYR 147
D NV+H+EID+++P N++ PGFT ER+ F +L +G D +R
Sbjct: 167 DYNVAHKEIDLANPA------------SNRQ---SPGFTDEERQGFTNLLAKG-FTDTFR 210
Query: 148 FLHKEKDMDCGFSW--SGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 205
LH D+ ++W + K RIDY++VS+ + D++ +M G
Sbjct: 211 HLH--GDVLNAYTWWAQRSRTSKINNTGWRIDYWLVSDRIADKVSKSDMIDSGAR----- 263
Query: 206 GSDHCPVSLEL 216
DH P+ +E+
Sbjct: 264 -QDHTPIVMEI 273
>gi|385840954|ref|YP_005864278.1| Exodeoxyribonuclease III [Lactobacillus salivarius CECT 5713]
gi|417787595|ref|ZP_12435278.1| exodeoxyribonuclease III [Lactobacillus salivarius NIAS840]
gi|417809656|ref|ZP_12456337.1| Exodeoxyribonuclease III [Lactobacillus salivarius GJ-24]
gi|418960898|ref|ZP_13512785.1| exodeoxyribonuclease III [Lactobacillus salivarius SMXD51]
gi|300215075|gb|ADJ79491.1| Exodeoxyribonuclease III [Lactobacillus salivarius CECT 5713]
gi|334307772|gb|EGL98758.1| exodeoxyribonuclease III [Lactobacillus salivarius NIAS840]
gi|335350580|gb|EGM52076.1| Exodeoxyribonuclease III [Lactobacillus salivarius GJ-24]
gi|380344565|gb|EIA32911.1| exodeoxyribonuclease III [Lactobacillus salivarius SMXD51]
Length = 275
Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 57/192 (29%), Positives = 93/192 (48%), Gaps = 29/192 (15%)
Query: 29 EPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWCG 87
+ +GR+I EF+ FY+ Y PN G + R+ WD++ ++++ KPL+ G
Sbjct: 109 DSEGRIITLEFDNFYVTQVYTPNAG--DGLRRLAERQVWDEKYADYLVSLDQNKPLLSSG 166
Query: 88 DLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYR 147
D NV+H+EID++HP + GFT ER F +L +G D +R
Sbjct: 167 DFNVAHKEIDLAHP---------------GNNHHSAGFTDEERAGFTNLLNKG-FTDTFR 210
Query: 148 FLHKEKDMDCGFSW--SGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 205
++H D+ +SW + K RIDY++ S + D+I+ EM L+
Sbjct: 211 YVH--GDVKDVYSWWAQRSRTSKINNSGWRIDYWLASNRIADKIVRSEM------LDSGE 262
Query: 206 GSDHCPVSLELS 217
DH P+ LE++
Sbjct: 263 RRDHTPIVLEIN 274
>gi|346311925|ref|ZP_08853923.1| exodeoxyribonuclease III [Collinsella tanakaei YIT 12063]
gi|345899662|gb|EGX69501.1| exodeoxyribonuclease III [Collinsella tanakaei YIT 12063]
Length = 277
Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 60/190 (31%), Positives = 91/190 (47%), Gaps = 30/190 (15%)
Query: 31 DGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC---SGKPLIWCG 87
+GRV EF+ F+ ++ Y PN + E R WD + F+ +GKP+I CG
Sbjct: 112 EGRVCALEFDRFWFVDVYTPNA--QNELARIDTRMAWDDAYRAFLKSLEDETGKPVITCG 169
Query: 88 DLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYR 147
D NV+H EID+ +P K + G GF+ ER +F +L G D +R
Sbjct: 170 DFNVAHNEIDLKNP---------------KSNRGNAGFSDEERSKFTELLDAG-FTDTWR 213
Query: 148 FLHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYG 206
L+ D++ +S WS + RIDYF+VS+ + + ++ +G
Sbjct: 214 SLN--PDVEGVYSWWSYRFNARKNNAGWRIDYFLVSDAIASNVRDARIRND------IFG 265
Query: 207 SDHCPVSLEL 216
SDHCPV LE+
Sbjct: 266 SDHCPVELEI 275
>gi|148544535|ref|YP_001271905.1| exodeoxyribonuclease III Xth [Lactobacillus reuteri DSM 20016]
gi|184153898|ref|YP_001842239.1| exodeoxyribonuclease III [Lactobacillus reuteri JCM 1112]
gi|227363037|ref|ZP_03847174.1| exodeoxyribonuclease III Xth [Lactobacillus reuteri MM2-3]
gi|325682856|ref|ZP_08162372.1| exodeoxyribonuclease III [Lactobacillus reuteri MM4-1A]
gi|148531569|gb|ABQ83568.1| exodeoxyribonuclease III Xth [Lactobacillus reuteri DSM 20016]
gi|183225242|dbj|BAG25759.1| exodeoxyribonuclease III [Lactobacillus reuteri JCM 1112]
gi|227071921|gb|EEI10207.1| exodeoxyribonuclease III Xth [Lactobacillus reuteri MM2-3]
gi|324977206|gb|EGC14157.1| exodeoxyribonuclease III [Lactobacillus reuteri MM4-1A]
Length = 253
Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 58/189 (30%), Positives = 97/189 (51%), Gaps = 28/189 (14%)
Query: 28 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWC 86
++ +GR+I E+ FYL++ Y P +G E+ R WD+ ++V+ S KP+I
Sbjct: 85 FDKEGRLITLEYPNFYLIDVYVPVSG--EKLQHLDYRLDWDRAFLDYVINLQSSKPVIIG 142
Query: 87 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 146
GD++++++ ID++ P E+ + GFT ER FG +L G L D +
Sbjct: 143 GDMSIAYQPIDLAEP---------------TENHHKAGFTKQERADFGKLLNAG-LTDTF 186
Query: 147 RFLHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 205
R+LH ++ ++ WS + R R+DYF+VS+ K+RI ++ L
Sbjct: 187 RYLH--PNLHGAYTWWSYRYDARERNVGWRLDYFLVSDVWKERIEEAKI------LSDVK 238
Query: 206 GSDHCPVSL 214
GS HCP+ L
Sbjct: 239 GSSHCPIEL 247
>gi|227891490|ref|ZP_04009295.1| exodeoxyribonuclease III [Lactobacillus salivarius ATCC 11741]
gi|227866637|gb|EEJ74058.1| exodeoxyribonuclease III [Lactobacillus salivarius ATCC 11741]
Length = 275
Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 57/192 (29%), Positives = 93/192 (48%), Gaps = 29/192 (15%)
Query: 29 EPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWCG 87
+ +GR+I EF+ FY+ Y PN G + R+ WD++ ++++ KPL+ G
Sbjct: 109 DSEGRIITLEFDNFYVTQVYTPNAG--DGLRRLAERQVWDEKYADYLVSLDQNKPLLSSG 166
Query: 88 DLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYR 147
D NV+H+EID++HP + GFT ER F +L +G D +R
Sbjct: 167 DFNVAHKEIDLAHP---------------GNNHHSAGFTDEERAGFTNLLNKG-FTDTFR 210
Query: 148 FLHKEKDMDCGFSW--SGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 205
++H D+ +SW + K RIDY++ S + D+I+ EM L+
Sbjct: 211 YVH--GDVKDVYSWWAQRSRTSKINNSGWRIDYWLASNRIADKIVRSEM------LDSGE 262
Query: 206 GSDHCPVSLELS 217
DH P+ LE++
Sbjct: 263 RRDHTPIVLEIN 274
>gi|255018766|ref|ZP_05290892.1| 3'-exo-deoxyribonuclease exoA [Listeria monocytogenes FSL F2-515]
Length = 136
Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 56/156 (35%), Positives = 82/156 (52%), Gaps = 26/156 (16%)
Query: 64 RRKWDKRIQEFVLQCS-GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQ 122
R ++ I E+V KP++ CGDLNV+HEEID+ +P K +
Sbjct: 4 RMTFEDAILEYVKNLDKTKPVVLCGDLNVAHEEIDLKNP---------------KTNRKN 48
Query: 123 PGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFS-WSGNPIGKYRGKRMRIDYFIV 181
GF+ ER +F A L G ID++R+ + D+ +S WS + R RIDYF+V
Sbjct: 49 AGFSDEERAKFSAFLDAG-FIDSFRYFY--PDLTDAYSWWSYRMNARARNTGWRIDYFVV 105
Query: 182 SEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 217
SE LKD+++ ++ + GSDHCPV LEL+
Sbjct: 106 SERLKDKLVDAKIHADVL------GSDHCPVELELN 135
>gi|123487248|ref|XP_001324898.1| exodeoxyribonuclease III family protein [Trichomonas vaginalis G3]
gi|121907789|gb|EAY12675.1| exodeoxyribonuclease III family protein [Trichomonas vaginalis G3]
Length = 289
Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 69/190 (36%), Positives = 95/190 (50%), Gaps = 30/190 (15%)
Query: 29 EPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRR-RKWDKRIQEFVLQC-SGKPLIWC 86
+PDGR I EF+ FYL+NTY N G E+ + ++W+ +I+ +++ KP+IW
Sbjct: 94 DPDGRCITMEFKNFYLINTYVVNAG--EDLGRLDYKIKEWNPKIRNHIMELEKKKPVIWT 151
Query: 87 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 146
GDLNV+H+ ID+ E K+ GY T ERK F L EG ID Y
Sbjct: 152 GDLNVAHKPIDIWQAE--GHEKIAGY-------------TDEERKWFDDFLNEGH-IDIY 195
Query: 147 RFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDR--IIACEMQGHGIELEGF 204
R LH E F++ G K +G RIDYFI + ++ I C ++G
Sbjct: 196 RELHPESHEFTFFNYRGQAKSKNQG--WRIDYFITGKGNIEKLGISDCVIEG------TI 247
Query: 205 YGSDHCPVSL 214
GSDH PV L
Sbjct: 248 DGSDHQPVIL 257
>gi|282852873|ref|ZP_06262214.1| exodeoxyribonuclease III [Lactobacillus gasseri 224-1]
gi|282555981|gb|EFB61602.1| exodeoxyribonuclease III [Lactobacillus gasseri 224-1]
Length = 254
Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 58/187 (31%), Positives = 95/187 (50%), Gaps = 27/187 (14%)
Query: 31 DGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGDL 89
+GR I EF FY ++ P +G K + F R W + + +V + KP+I GD+
Sbjct: 88 EGRSITLEFSNFYFIDVQVPFSGEKLQRLDF--RELWAQTFRNYVTKLMQYKPVIIGGDM 145
Query: 90 NVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFL 149
+V+H++ID++ P+ ++ GFT ERK F +L G ID +R+
Sbjct: 146 SVAHDKIDLAEPD---------------DNHRHAGFTGIERKEFSELLNAG-FIDTFRYF 189
Query: 150 HKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDH 209
H ++ +S+ + K G R+DYF+VS L+D++I ++ L GSDH
Sbjct: 190 HPDEAKYTYWSYREDARAKNIG--WRLDYFLVSNNLEDKMINAQI------LNNIMGSDH 241
Query: 210 CPVSLEL 216
CP+ L+L
Sbjct: 242 CPIELDL 248
>gi|311110171|ref|ZP_07711568.1| exodeoxyribonuclease III [Lactobacillus gasseri MV-22]
gi|311065325|gb|EFQ45665.1| exodeoxyribonuclease III [Lactobacillus gasseri MV-22]
Length = 265
Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 58/187 (31%), Positives = 95/187 (50%), Gaps = 27/187 (14%)
Query: 31 DGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGDL 89
+GR I EF FY ++ P +G K + F R W + + +V + KP+I GD+
Sbjct: 99 EGRSITLEFSNFYFIDVQVPFSGEKLQRLDF--RELWAQTFRNYVTKLMQYKPVIIGGDM 156
Query: 90 NVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFL 149
+V+H++ID++ P+ ++ GFT ERK F +L G ID +R+
Sbjct: 157 SVAHDKIDLAEPD---------------DNHRHAGFTGIERKEFSELLNAG-FIDTFRYF 200
Query: 150 HKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDH 209
H ++ +S+ + K G R+DYF+VS L+D++I ++ L GSDH
Sbjct: 201 HPDEAKYTYWSYREDARAKNIG--WRLDYFLVSNNLEDKMINAQI------LNNIMGSDH 252
Query: 210 CPVSLEL 216
CP+ L+L
Sbjct: 253 CPIELDL 259
>gi|116630243|ref|YP_815415.1| exonuclease III [Lactobacillus gasseri ATCC 33323]
gi|420148175|ref|ZP_14655447.1| Exonuclease III [Lactobacillus gasseri CECT 5714]
gi|116095825|gb|ABJ60977.1| Exonuclease III [Lactobacillus gasseri ATCC 33323]
gi|398400333|gb|EJN53898.1| Exonuclease III [Lactobacillus gasseri CECT 5714]
Length = 268
Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 58/187 (31%), Positives = 95/187 (50%), Gaps = 27/187 (14%)
Query: 31 DGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGDL 89
+GR I EF FY ++ P +G K + F R W + + +V + KP+I GD+
Sbjct: 102 EGRSITLEFSNFYFIDVQVPFSGEKLQRLDF--RELWAQTFRNYVTKLMQYKPVIIGGDM 159
Query: 90 NVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFL 149
+V+H++ID++ P+ ++ GFT ERK F +L G ID +R+
Sbjct: 160 SVAHDKIDLAEPD---------------DNHRHAGFTGIERKEFSELLNAG-FIDTFRYF 203
Query: 150 HKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDH 209
H ++ +S+ + K G R+DYF+VS L+D++I ++ L GSDH
Sbjct: 204 HPDEAKYTYWSYREDARAKNIG--WRLDYFLVSNNLEDKMINAQI------LNNIMGSDH 255
Query: 210 CPVSLEL 216
CP+ L+L
Sbjct: 256 CPIELDL 262
>gi|260881707|ref|ZP_05405068.2| exodeoxyribonuclease III [Mitsuokella multacida DSM 20544]
gi|260848221|gb|EEX68228.1| exodeoxyribonuclease III [Mitsuokella multacida DSM 20544]
Length = 253
Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 60/191 (31%), Positives = 93/191 (48%), Gaps = 26/191 (13%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIW 85
+++ +GRVI EF Y + Y PN+ E ++ R +W+ + +++ K P+I
Sbjct: 86 EHDHEGRVITLEFPDCYFVTVYTPNSKRGLERLAY--RMEWEDAFRAYLVALDAKKPVIV 143
Query: 86 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 145
CGDLNV+H EID+ +P K + GFT ER +F +L G ID
Sbjct: 144 CGDLNVAHTEIDLKNP---------------KTNHHNAGFTDEERGKFTELLDAG-FIDT 187
Query: 146 YRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 205
+R L+ ++ + WS + RIDYF+ S L+++I + +
Sbjct: 188 FRALYPDRTGIYTW-WSYLRKARDTNAGWRIDYFVTSARLREKIADATIHNE------VF 240
Query: 206 GSDHCPVSLEL 216
GSDHCPV LEL
Sbjct: 241 GSDHCPVGLEL 251
>gi|417937397|ref|ZP_12580697.1| exodeoxyribonuclease III [Streptococcus infantis SK970]
gi|343391661|gb|EGV04234.1| exodeoxyribonuclease III [Streptococcus infantis SK970]
Length = 275
Score = 89.0 bits (219), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 57/191 (29%), Positives = 93/191 (48%), Gaps = 29/191 (15%)
Query: 29 EPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCG 87
+ +GR+I EF+TF++ Y PN G + + R+ WD + E++ Q KP++ G
Sbjct: 109 DSEGRIITLEFDTFFVTQVYTPNAG--DGLKRLEERQVWDVKYAEYLAQLDKQKPVLSTG 166
Query: 88 DLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYR 147
D NV+H+EID+++P N+ PGFT ER+ F +L +G D +R
Sbjct: 167 DYNVAHKEIDLANP------------ASNRR---SPGFTDEEREGFTNLLAKG-FTDTFR 210
Query: 148 FLHKEKDMDCGFSW--SGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 205
+H DM ++W + K RIDY++ S + D++ +M G
Sbjct: 211 HIH--GDMPERYTWWAQRSKTSKINNTGWRIDYWLTSNRVADKVTKSDMIDSGAR----- 263
Query: 206 GSDHCPVSLEL 216
DH P+ LE+
Sbjct: 264 -QDHTPIVLEI 273
>gi|116628238|ref|YP_820857.1| 3'-exo-deoxyribonuclease [Streptococcus thermophilus LMD-9]
gi|386087152|ref|YP_006003026.1| Exonuclease III [Streptococcus thermophilus ND03]
gi|387910253|ref|YP_006340559.1| 3'-exo-deoxyribonuclease [Streptococcus thermophilus MN-ZLW-002]
gi|116101515|gb|ABJ66661.1| Exonuclease III [Streptococcus thermophilus LMD-9]
gi|312278865|gb|ADQ63522.1| Exonuclease III [Streptococcus thermophilus ND03]
gi|387575188|gb|AFJ83894.1| 3'-exo-deoxyribonuclease [Streptococcus thermophilus MN-ZLW-002]
Length = 275
Score = 89.0 bits (219), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 57/189 (30%), Positives = 91/189 (48%), Gaps = 29/189 (15%)
Query: 31 DGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCGDL 89
+GR+I EF+TF++ Y PN G + R+ WD++ +++ + KP++ GD
Sbjct: 111 EGRIITLEFDTFFVTQVYTPNAG--DGLKRLLERQIWDEKYADYLAELDAQKPVLATGDY 168
Query: 90 NVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFL 149
NV+H+EID+++P N+ PGFT ER F +L +G ID YR
Sbjct: 169 NVAHKEIDLANPS------------SNRR---SPGFTDEERAGFTNLLNKG-FIDTYR-- 210
Query: 150 HKEKDMDCGFSW--SGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGS 207
H D+ ++W + K RIDY++ S + D++I M G
Sbjct: 211 HLNGDVTGAYTWWAQRSKTSKINNTGWRIDYWLTSNRIADKVIKSNMIDSGDR------Q 264
Query: 208 DHCPVSLEL 216
DH P+ LE+
Sbjct: 265 DHTPIVLEI 273
>gi|422731891|ref|ZP_16788239.1| exodeoxyribonuclease III [Enterococcus faecalis TX0645]
gi|315162099|gb|EFU06116.1| exodeoxyribonuclease III [Enterococcus faecalis TX0645]
Length = 251
Score = 89.0 bits (219), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 56/190 (29%), Positives = 96/190 (50%), Gaps = 26/190 (13%)
Query: 28 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWC 86
++ +GRVI E+ F+++ Y PN+ + E R W+ + ++ + + KP+I C
Sbjct: 85 HDQEGRVITLEYPEFFMVTCYTPNS--QAELKRLAYRMTWEDAFRAYLNELNQEKPVILC 142
Query: 87 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 146
GDLNV+H++ID+ + K + GFT ER++F +L G D +
Sbjct: 143 GDLNVAHQKIDLKNW---------------KTNQKNAGFTPEERQKFTGLLDSG-FTDTF 186
Query: 147 RFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYG 206
R+ + E + + WS + RIDYF+VSE L +R+++ ++ + G
Sbjct: 187 RYFYPEAEGIYSW-WSYRFNARKNNAGWRIDYFVVSESLNERLVSAKIHTDIL------G 239
Query: 207 SDHCPVSLEL 216
SDHCPV + L
Sbjct: 240 SDHCPVEVVL 249
>gi|400289764|ref|ZP_10791791.1| putative exodeoxyribonuclease III [Streptococcus ratti FA-1 = DSM
20564]
gi|399920555|gb|EJN93372.1| putative exodeoxyribonuclease III [Streptococcus ratti FA-1 = DSM
20564]
Length = 275
Score = 89.0 bits (219), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 56/191 (29%), Positives = 92/191 (48%), Gaps = 29/191 (15%)
Query: 29 EPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWCG 87
+ +GR+I EF+ F++ Y PN G + + R+ WD++ ++ KP++ G
Sbjct: 109 DAEGRIITLEFDHFFVTQVYTPNAG--DGLRRLEERQIWDEKYAAYLADLDKQKPVLAAG 166
Query: 88 DLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYR 147
D NV+H+EID++HP N+ PGFT ER F +L +G D +R
Sbjct: 167 DYNVAHQEIDLAHPA------------SNRR---SPGFTDEERAGFTNLLAKG-FTDTFR 210
Query: 148 FLHKEKDMDCGFSW--SGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 205
++H D+ +SW + K RIDY++ S + D+++ EM G
Sbjct: 211 YIH--GDIPDVYSWWAQRSKTSKINNSGWRIDYWLTSNRIADKVLKSEMIDSGTR----- 263
Query: 206 GSDHCPVSLEL 216
DH P+ LE+
Sbjct: 264 -QDHTPILLEI 273
>gi|146318325|ref|YP_001198037.1| exonuclease III [Streptococcus suis 05ZYH33]
gi|145689131|gb|ABP89637.1| Exonuclease III [Streptococcus suis 05ZYH33]
Length = 168
Score = 89.0 bits (219), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 57/192 (29%), Positives = 96/192 (50%), Gaps = 29/192 (15%)
Query: 29 EPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWCG 87
+ +GR+I EF+ FY+ Y PN G + R+ WD + +++ + S KP++ G
Sbjct: 2 DSEGRIITLEFDDFYVTQVYTPNAG--DGLKRLADRQIWDVQYADYLAKLDSHKPVLATG 59
Query: 88 DLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYR 147
D NV+H+EID+++P N++ PGFT ER+ F +L +G D +R
Sbjct: 60 DYNVAHKEIDLANP------------ASNRQ---SPGFTDEERQGFTNLLAKG-FTDTFR 103
Query: 148 FLHKEKDMDCGFSW--SGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 205
LH D+ ++W + K RIDY++VS+ + D++ +M G
Sbjct: 104 HLH--GDVLNAYTWWAQRSRTSKINNTGWRIDYWLVSDRIADKVSKSDMIDSGAR----- 156
Query: 206 GSDHCPVSLELS 217
DH P+ +E+S
Sbjct: 157 -QDHTPIVMEIS 167
>gi|430362273|ref|ZP_19427003.1| exonuclease III [Enterococcus faecalis OG1X]
gi|430366851|ref|ZP_19427621.1| exonuclease III [Enterococcus faecalis M7]
gi|429512184|gb|ELA01799.1| exonuclease III [Enterococcus faecalis OG1X]
gi|429516857|gb|ELA06332.1| exonuclease III [Enterococcus faecalis M7]
Length = 271
Score = 89.0 bits (219), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 56/190 (29%), Positives = 96/190 (50%), Gaps = 26/190 (13%)
Query: 28 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWC 86
++ +GRVI E+ F+++ Y PN+ + E R W+ + ++ + + KP+I C
Sbjct: 105 HDQEGRVITLEYPEFFMVTCYTPNS--QAELKRLAYRMTWEDAFRAYLNELNQEKPVILC 162
Query: 87 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 146
GDLNV+H++ID+ + K + GFT ER++F +L G D +
Sbjct: 163 GDLNVAHQKIDLKNW---------------KTNQKNAGFTPEERQKFTELLDSG-FTDTF 206
Query: 147 RFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYG 206
R+ + E + + WS + RIDYF+VSE L +R+++ ++ + G
Sbjct: 207 RYFYPEAEGIYSW-WSYRFNARKNNAGWRIDYFVVSESLNERLVSAKIHTDIL------G 259
Query: 207 SDHCPVSLEL 216
SDHCPV + L
Sbjct: 260 SDHCPVEVVL 269
>gi|257420126|ref|ZP_05597120.1| exonuclease III [Enterococcus faecalis T11]
gi|257161954|gb|EEU91914.1| exonuclease III [Enterococcus faecalis T11]
Length = 251
Score = 89.0 bits (219), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 57/195 (29%), Positives = 97/195 (49%), Gaps = 26/195 (13%)
Query: 23 LSALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-K 81
L ++ +GRVI E+ F+++ Y PN+ + E R W+ + ++ + + K
Sbjct: 80 LGVEAHDQEGRVITLEYPEFFMVTCYTPNS--QAELKRLAYRMTWEDAFRAYLNELNQEK 137
Query: 82 PLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGR 141
P+I CGDLNV+H++ID+ + K + GFT ER++F +L G
Sbjct: 138 PVILCGDLNVAHQKIDLKNW---------------KTNQKNAGFTPEERQKFTELLDSG- 181
Query: 142 LIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIEL 201
D +R+ + E + + WS + RIDYF+VSE L +R+++ ++ +
Sbjct: 182 FTDTFRYFYPEAEGIYSW-WSYRFNARKNNAGWRIDYFVVSESLNERLVSAKIHTDIL-- 238
Query: 202 EGFYGSDHCPVSLEL 216
GSDHCPV + L
Sbjct: 239 ----GSDHCPVEVVL 249
>gi|392567192|gb|EIW60367.1| hypothetical protein TRAVEDRAFT_45617 [Trametes versicolor
FP-101664 SS1]
Length = 362
Score = 89.0 bits (219), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 56/195 (28%), Positives = 96/195 (49%), Gaps = 33/195 (16%)
Query: 32 GRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIWCGDLN 90
GR++ EF + Y++ TY N G + +++W+ + ++ + K P+IW GDLN
Sbjct: 189 GRIVTLEFASCYVVGTYVVNAG--TGLKTLDAKKEWNTHFEAYIRELDAKKPVIWTGDLN 246
Query: 91 VSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQ-PGFTIAERKRFGAILKEGR-------L 142
V+ +D+++P K +W + PG+T AE + IL +
Sbjct: 247 VAPTALDLTNP---------------KPNWNKTPGYTEAETSSYARILNTSKEEVDAPQF 291
Query: 143 IDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELE 202
+D +R LH FS+ N + +G R+D F+VS L++R+ CE++ E
Sbjct: 292 VDVWRKLHPALKHYTYFSYRFN--CREKGIGWRLDMFVVSARLEERVKMCEIRS-----E 344
Query: 203 GFYGSDHCPVSLELS 217
+ SDHCPV +EL+
Sbjct: 345 VYGASDHCPVVMELA 359
>gi|256961018|ref|ZP_05565189.1| exonuclease III [Enterococcus faecalis Merz96]
gi|293384592|ref|ZP_06630458.1| exodeoxyribonuclease III [Enterococcus faecalis R712]
gi|293386821|ref|ZP_06631392.1| exodeoxyribonuclease III [Enterococcus faecalis S613]
gi|312906418|ref|ZP_07765426.1| exodeoxyribonuclease III [Enterococcus faecalis DAPTO 512]
gi|312979423|ref|ZP_07791111.1| exodeoxyribonuclease III [Enterococcus faecalis DAPTO 516]
gi|422701088|ref|ZP_16758929.1| exodeoxyribonuclease III [Enterococcus faecalis TX1342]
gi|256951514|gb|EEU68146.1| exonuclease III [Enterococcus faecalis Merz96]
gi|291078138|gb|EFE15502.1| exodeoxyribonuclease III [Enterococcus faecalis R712]
gi|291083824|gb|EFE20787.1| exodeoxyribonuclease III [Enterococcus faecalis S613]
gi|310627572|gb|EFQ10855.1| exodeoxyribonuclease III [Enterococcus faecalis DAPTO 512]
gi|311287794|gb|EFQ66350.1| exodeoxyribonuclease III [Enterococcus faecalis DAPTO 516]
gi|315170467|gb|EFU14484.1| exodeoxyribonuclease III [Enterococcus faecalis TX1342]
Length = 251
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 57/195 (29%), Positives = 97/195 (49%), Gaps = 26/195 (13%)
Query: 23 LSALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-K 81
L ++ +GRVI E+ F+++ Y PN+ + E R W+ + ++ + + K
Sbjct: 80 LGVEAHDQEGRVITLEYPEFFMVTCYTPNS--QAELKRLAYRMTWEDAFRAYLNELNQEK 137
Query: 82 PLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGR 141
P+I CGDLNV+H++ID+ + K + GFT ER++F +L G
Sbjct: 138 PVILCGDLNVAHQKIDLKNW---------------KTNQKNAGFTPEERQKFTELLDSG- 181
Query: 142 LIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIEL 201
D +R+ + E + + WS + RIDYF+VSE L +R+++ ++ +
Sbjct: 182 FTDTFRYFYPEAEGIYSW-WSYRFNARKNNAGWRIDYFVVSESLNERLVSAKIHTDIL-- 238
Query: 202 EGFYGSDHCPVSLEL 216
GSDHCPV + L
Sbjct: 239 ----GSDHCPVEVVL 249
>gi|199597303|ref|ZP_03210734.1| Exonuclease III [Lactobacillus rhamnosus HN001]
gi|199591819|gb|EDY99894.1| Exonuclease III [Lactobacillus rhamnosus HN001]
Length = 253
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 60/189 (31%), Positives = 88/189 (46%), Gaps = 27/189 (14%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIW 85
+++ +GR+I E+ FYL+ Y PN+G E R++WD+ + + + K PL++
Sbjct: 85 EHDTEGRIITLEYTKFYLMTVYTPNSG--GELKRLDYRQQWDRDFLAYTNELAAKKPLVY 142
Query: 86 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 145
CGDLNV+HE ID+ + +K + GFT ER F L G ID
Sbjct: 143 CGDLNVAHEPIDLKN---------------DKTNHHNAGFTDEERADFTKQLNSG-FIDT 186
Query: 146 YRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 205
+R H D WS + + RIDYF+ S + I ++ L
Sbjct: 187 FR--HFYPDTVTYSWWSYHFHARANNAGWRIDYFVASSAFQPYIQDAKI------LTQIM 238
Query: 206 GSDHCPVSL 214
GSDHCPV L
Sbjct: 239 GSDHCPVEL 247
>gi|290559315|gb|EFD92650.1| exodeoxyribonuclease III [Candidatus Parvarchaeum acidophilus
ARMAN-5]
Length = 251
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 61/194 (31%), Positives = 98/194 (50%), Gaps = 30/194 (15%)
Query: 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIW 85
+++ +GR + EF+ ++L+N Y PN+ + + + + K++K I +F+ KP+I
Sbjct: 85 QFDREGRTLTLEFKDYFLINAYFPNS--RRDLSRLDYKIKFNKSILKFMQALRRKKPVII 142
Query: 86 CGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDA 145
GD NV+H EID++ P K + G GFT ERK ++K+G ID
Sbjct: 143 GGDFNVAHNEIDIARP---------------KSNQGNAGFTSVERKFIDEMIKKG-YIDT 186
Query: 146 YRFLHKEKDMDCGFSWSGNPIGKYRGKRM--RIDYFIVSEELKDRIIACEMQGHGIELEG 203
+R +KE + ++W R + RIDY VS ELK R+ + + I
Sbjct: 187 FRIFNKE---NGNYTWWTYLYKSARTNNIGWRIDYLFVSNELKKRVKDAGIIKNKI---- 239
Query: 204 FYGSDHCPVSLELS 217
GSDH PV +EL+
Sbjct: 240 --GSDHAPVYIELN 251
>gi|268608445|ref|ZP_06142172.1| exodeoxyribonuclease [Ruminococcus flavefaciens FD-1]
Length = 248
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 64/187 (34%), Positives = 94/187 (50%), Gaps = 31/187 (16%)
Query: 31 DGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK-PLIWCGDL 89
+GRVI E+E FY + Y PN + E R +++ ++ ++ + K P+I+CGDL
Sbjct: 87 EGRVITCEYEDFYFVGCYVPNA--QNELKRIDYRMEFEDAMRGYLSELDKKKPVIYCGDL 144
Query: 90 NVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFL 149
NV+H EID+ +P K + G GF+ ER +F +L G D+YR L
Sbjct: 145 NVAHNEIDLKNP---------------KSNVGNAGFSDEERGKFTELLAAG-FSDSYRSL 188
Query: 150 HKEKDMDCGFSWSGNPIGKYRGKRM--RIDYFIVSEELKDRIIACEMQGHGIELEGFYGS 207
+ EK +SW K R K + RIDYF+VS+ R+ ++ L GS
Sbjct: 189 YPEK---IEYSWWSYRF-KAREKNIGWRIDYFVVSDRFMPRVKDSQI------LTDVTGS 238
Query: 208 DHCPVSL 214
DHCPV L
Sbjct: 239 DHCPVQL 245
>gi|312900096|ref|ZP_07759412.1| exodeoxyribonuclease III [Enterococcus faecalis TX0470]
gi|311292731|gb|EFQ71287.1| exodeoxyribonuclease III [Enterococcus faecalis TX0470]
Length = 251
Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 56/190 (29%), Positives = 96/190 (50%), Gaps = 26/190 (13%)
Query: 28 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWC 86
++ +GRVI E+ F+++ Y PN+ + E R W+ + ++ + + KP+I C
Sbjct: 85 HDQEGRVITLEYPEFFMVTCYTPNS--QAELKRLAYRMTWEDAFRAYLNELNQEKPVILC 142
Query: 87 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 146
GDLNV+H++ID+ + K + GFT ER++F +L G D +
Sbjct: 143 GDLNVAHQKIDLKNW---------------KTNQKNAGFTPEERQKFTELLDSG-FTDTF 186
Query: 147 RFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYG 206
R+ + E + + WS + RIDYF+VSE L +R+++ ++ + G
Sbjct: 187 RYFYPEAEGIYSW-WSYRFNARKNNAGWRIDYFVVSESLNERLVSAKIHTDIL------G 239
Query: 207 SDHCPVSLEL 216
SDHCPV + L
Sbjct: 240 SDHCPVEVVL 249
>gi|356498631|ref|XP_003518153.1| PREDICTED: apurinic endonuclease-redox protein-like [Glycine max]
Length = 507
Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 62/189 (32%), Positives = 95/189 (50%), Gaps = 27/189 (14%)
Query: 28 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWC 86
++ +GR++ AEF+TFYL+ Y PN+G + S+ R +WD + ++ + KP+I
Sbjct: 340 HDSEGRLVTAEFDTFYLICGYVPNSGDGLKRLSY-RVTEWDPSLSNYLKELEKSKPVILT 398
Query: 87 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 146
GDLN +HEEID+ +P A K + GFT ERK F +D +
Sbjct: 399 GDLNCAHEEIDIYNP---AGNKRSA------------GFTDEERKSFAKNFLSRGFVDTF 443
Query: 147 RFLHKEKDMDCGFSWSGNPIGKYRGKR-MRIDYFIVSEELKDRIIACEMQGHGIELEGFY 205
R H G+++ G G + R R+DYF+VSE + D++ + L
Sbjct: 444 RRQHPGV---IGYTYWGYRHGGRKFNRGWRLDYFLVSESIADKVHDSYI------LPDVT 494
Query: 206 GSDHCPVSL 214
GSDHCP+ L
Sbjct: 495 GSDHCPIGL 503
>gi|222152632|ref|YP_002561807.1| exodeoxyribonuclease [Streptococcus uberis 0140J]
gi|222113443|emb|CAR41130.1| exodeoxyribonuclease [Streptococcus uberis 0140J]
Length = 275
Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 58/191 (30%), Positives = 94/191 (49%), Gaps = 29/191 (15%)
Query: 29 EPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCS-GKPLIWCG 87
+ +GR+I EF+ FY+ Y PN G ++ R++WD + E++ KP++ G
Sbjct: 109 DAEGRIITLEFDDFYVTQVYTPNAG--DQLRRLPERQEWDIKYAEYLASLDRNKPVLATG 166
Query: 88 DLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYR 147
D NV+H EID+++P A+ + + GFT ER F A+L +G D +R
Sbjct: 167 DYNVAHHEIDLANP---ASNRRSA------------GFTDEERAGFTALLAKG-FTDTFR 210
Query: 148 FLHKEKDMDCGFSW--SGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 205
+LH D+ ++W + K RIDY++ S + D++I EM G
Sbjct: 211 YLH--GDIPNVYTWWAQRSKTSKINNTGWRIDYWLTSNRIADKVIKSEMIHSGER----- 263
Query: 206 GSDHCPVSLEL 216
DH P+ LE+
Sbjct: 264 -QDHTPILLEI 273
>gi|389856780|ref|YP_006359023.1| exodeoxyribonuclease [Streptococcus suis ST1]
gi|353740498|gb|AER21505.1| exodeoxyribonuclease [Streptococcus suis ST1]
Length = 275
Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 57/192 (29%), Positives = 96/192 (50%), Gaps = 29/192 (15%)
Query: 29 EPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWCG 87
+ +GR+I EF+ FY+ Y PN G + R+ WD + +++ + S KP++ G
Sbjct: 109 DSEGRIITLEFDDFYVTQVYTPNAG--DGLKRLADRQIWDVQYADYLAKLDSHKPVLATG 166
Query: 88 DLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYR 147
D NV+H+EID+++P N++ PGFT ER+ F +L +G D +R
Sbjct: 167 DYNVAHKEIDLANPA------------SNRQ---SPGFTDEERQGFTNLLAKG-FTDTFR 210
Query: 148 FLHKEKDMDCGFSW--SGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFY 205
LH D+ ++W + K RIDY++VS+ + D++ +M G
Sbjct: 211 HLH--GDVLNAYTWWAQRSRTSKINNTGWRIDYWLVSDRIADKVSKSDMIDSGAR----- 263
Query: 206 GSDHCPVSLELS 217
DH P+ +E+S
Sbjct: 264 -QDHTPIVMEIS 274
>gi|422694022|ref|ZP_16752027.1| exodeoxyribonuclease III [Enterococcus faecalis TX4244]
gi|315148697|gb|EFT92713.1| exodeoxyribonuclease III [Enterococcus faecalis TX4244]
Length = 251
Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 56/190 (29%), Positives = 96/190 (50%), Gaps = 26/190 (13%)
Query: 28 YEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG-KPLIWC 86
++ +GRVI E+ F+++ Y PN+ + E R W+ + ++ + + KP+I C
Sbjct: 85 HDQEGRVITLEYPEFFMVTCYTPNS--QAELKRLAYRMTWEDAFRAYLNELNQEKPVILC 142
Query: 87 GDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 146
GDLNV+H++ID+ + K + GFT ER++F +L G D +
Sbjct: 143 GDLNVAHQKIDLKNW---------------KTNQKNAGFTPEERQKFTELLDSG-FTDTF 186
Query: 147 RFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYG 206
R+ + E + + WS + RIDYF+VSE L +R+++ ++ + G
Sbjct: 187 RYFYPEAEGIYSW-WSYRFNARKNNAGWRIDYFVVSESLNERLVSAKIHTDIL------G 239
Query: 207 SDHCPVSLEL 216
SDHCPV + L
Sbjct: 240 SDHCPVEVVL 249
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.321 0.140 0.443
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,939,327,266
Number of Sequences: 23463169
Number of extensions: 172372511
Number of successful extensions: 328527
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 838
Number of HSP's successfully gapped in prelim test: 3019
Number of HSP's that attempted gapping in prelim test: 320967
Number of HSP's gapped (non-prelim): 3989
length of query: 233
length of database: 8,064,228,071
effective HSP length: 138
effective length of query: 95
effective length of database: 9,121,278,045
effective search space: 866521414275
effective search space used: 866521414275
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 74 (33.1 bits)