Query 026782
Match_columns 233
No_of_seqs 211 out of 1329
Neff 8.7
Searched_HMMs 46136
Date Fri Mar 29 12:37:50 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026782.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026782hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG0708 XthA Exonuclease III [ 100.0 8.8E-44 1.9E-48 292.9 16.5 193 5-218 65-261 (261)
2 PRK13911 exodeoxyribonuclease 100.0 3.7E-40 8.1E-45 274.9 21.2 184 5-216 64-249 (250)
3 PRK11756 exonuclease III; Prov 100.0 3.8E-35 8.2E-40 247.8 19.4 199 4-218 63-268 (268)
4 TIGR00195 exoDNase_III exodeox 100.0 2.9E-33 6.4E-38 234.5 20.7 189 4-216 63-254 (254)
5 TIGR00633 xth exodeoxyribonucl 100.0 5.6E-30 1.2E-34 214.1 21.0 187 4-217 66-255 (255)
6 KOG1294 Apurinic/apyrimidinic 99.9 2.1E-21 4.6E-26 166.2 15.9 197 3-218 130-335 (335)
7 COG3568 ElsH Metal-dependent h 99.7 1.8E-16 3.9E-21 130.9 12.1 161 3-219 91-258 (259)
8 PRK05421 hypothetical protein; 99.7 1.8E-15 3.9E-20 127.5 14.6 150 3-219 107-262 (263)
9 PF14529 Exo_endo_phos_2: Endo 99.6 1.5E-15 3.1E-20 112.3 9.8 119 42-213 1-119 (119)
10 PRK15251 cytolethal distending 99.6 4.6E-14 9.9E-19 117.5 14.4 81 3-95 117-199 (271)
11 TIGR03395 sphingomy sphingomye 99.6 8.4E-14 1.8E-18 118.4 15.0 90 4-94 91-191 (283)
12 PTZ00297 pantothenate kinase; 99.5 7.6E-13 1.6E-17 132.4 18.1 187 5-222 104-318 (1452)
13 KOG3873 Sphingomyelinase famil 99.5 3.8E-13 8.2E-18 114.1 9.8 182 5-224 81-298 (422)
14 COG3021 Uncharacterized protei 99.3 6.9E-11 1.5E-15 99.7 11.4 156 2-219 149-308 (309)
15 PF03372 Exo_endo_phos: Endonu 99.2 2.1E-11 4.5E-16 99.4 7.1 85 4-95 74-171 (249)
16 PLN03144 Carbon catabolite rep 98.8 2.9E-08 6.3E-13 91.8 11.4 49 42-95 419-470 (606)
17 KOG2756 Predicted Mg2+-depende 98.5 2.4E-07 5.2E-12 76.4 5.9 162 8-217 171-348 (349)
18 smart00476 DNaseIc deoxyribonu 98.3 2.1E-06 4.6E-11 72.6 7.9 48 41-94 143-190 (276)
19 smart00128 IPPc Inositol polyp 98.2 1.6E-05 3.5E-10 68.6 11.0 62 28-94 124-195 (310)
20 COG2374 Predicted extracellula 97.8 5.3E-05 1.2E-09 70.7 7.3 137 41-222 622-792 (798)
21 KOG0566 Inositol-1,4,5-triphos 97.4 0.0012 2.6E-08 63.2 9.8 66 18-92 651-726 (1080)
22 PLN03191 Type I inositol-1,4,5 97.1 0.0082 1.8E-07 55.6 11.9 40 173-220 554-593 (621)
23 KOG1294 Apurinic/apyrimidinic 96.8 0.0066 1.4E-07 52.8 8.1 153 27-217 8-163 (335)
24 COG5411 Phosphatidylinositol 5 96.5 0.013 2.9E-07 51.9 8.0 47 41-92 166-218 (460)
25 KOG0620 Glucose-repressible al 96.3 0.0048 1E-07 54.3 4.4 46 174-221 300-354 (361)
26 KOG2338 Transcriptional effect 95.6 0.038 8.2E-07 49.9 6.6 63 28-95 233-307 (495)
27 COG5239 CCR4 mRNA deadenylase, 94.3 0.16 3.5E-06 44.2 6.9 44 174-220 314-367 (378)
28 PTZ00312 inositol-1,4,5-tripho 89.6 1.9 4.2E-05 36.8 7.5 54 41-94 81-142 (356)
29 KOG2338 Transcriptional effect 68.9 3 6.4E-05 38.1 1.7 46 173-218 429-493 (495)
30 KOG1976 Inositol polyphosphate 64.4 9.8 0.00021 32.7 3.8 43 174-219 340-389 (391)
31 PF08253 Leader_Erm: Erm Leade 45.2 25 0.00054 16.8 1.8 13 1-13 1-13 (19)
32 cd07391 MPP_PF1019 Pyrococcus 38.4 43 0.00093 25.9 3.5 25 66-90 28-52 (172)
33 KOG1387 Glycosyltransferase [C 32.1 35 0.00076 30.2 2.2 47 41-95 45-92 (465)
34 COG1407 Predicted ICC-like pho 31.7 53 0.0012 27.2 3.1 27 65-91 49-75 (235)
35 PHA02546 47 endonuclease subun 23.2 1E+02 0.0023 26.8 3.6 25 65-89 25-49 (340)
36 cd00840 MPP_Mre11_N Mre11 nucl 22.7 1.2E+02 0.0025 24.0 3.6 26 66-91 28-53 (223)
37 TIGR00619 sbcd exonuclease Sbc 21.8 1.3E+02 0.0029 24.9 3.9 25 65-89 25-49 (253)
38 KOG1111 N-acetylglucosaminyltr 20.3 3.9E+02 0.0085 24.0 6.4 16 73-88 219-234 (426)
39 cd07386 MPP_DNA_pol_II_small_a 20.1 88 0.0019 25.6 2.4 24 68-91 19-47 (243)
No 1
>COG0708 XthA Exonuclease III [DNA replication, recombination, and repair]
Probab=100.00 E-value=8.8e-44 Score=292.89 Aligned_cols=193 Identities=30% Similarity=0.494 Sum_probs=166.3
Q ss_pred EEEEEeecccCeeeeccCCCCCCCCCCCCEEEEEECCEEEEEEEecCCCCCCccchHHHHHHHHHHHHHHHHhc--CCCC
Q 026782 5 ICLFYVCLCNNSSVFHFLLSALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC--SGKP 82 (233)
Q Consensus 5 ~~~i~sr~~~~~~~~~~~~~~~~~d~~gR~i~~~~~~~~l~nvy~P~~~~~~~~~~~~~r~~~~~~l~~~l~~~--~~~~ 82 (233)
||||+||.++..+.++++.. +..|.+||+|.++++.++|+|+|+||++... .+++.+|++|++.|..++.+. .+.+
T Consensus 65 GVailsr~~~~~v~~g~~~~-~~~d~e~R~I~a~~~~~~v~~~Y~PnG~~~~-~~k~~yKl~f~~~l~~~l~~l~~~~~~ 142 (261)
T COG0708 65 GVAILSKKPPDDVRRGFPGE-EEDDEEGRVIEAEFDGFRVINLYFPNGSSIG-LEKFDYKLRFLDALRNYLEELLKKGKP 142 (261)
T ss_pred eEEEEEccCchhhhcCCCCC-ccccccCcEEEEEECCEEEEEEEcCCCCCCC-CcchHHHHHHHHHHHHHHHHHhhcCCC
Confidence 99999999999999999852 2467899999999999999999999999732 356999999999999998864 5689
Q ss_pred EEEEcCCCccCCCCcCCCh-hhhhhhhcCCCCCCCCCCCCCCCCCHHHHHHHHHHHhcCCeeEeeeccCCCCCCCCceec
Q 026782 83 LIWCGDLNVSHEEIDVSHP-EFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSW 161 (233)
Q Consensus 83 vIi~GDFN~~~~~~D~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~er~~~~~l~~~~~l~D~~r~~~p~~~~~~~~T~ 161 (233)
+|+|||||++|.++|.+++ ++|. |.+.++|+++||++|..+++.| |+|++|+++|+.. .|||
T Consensus 143 ~vl~GD~NIap~~iDv~~~~~~~~-------------n~~~~~f~~eeR~~~~~ll~~G-~~D~~R~~~p~~~---~YTw 205 (261)
T COG0708 143 VVLCGDFNIAPEEIDVANPKKRWL-------------NEGNSGFLPEERAWFRRLLNAG-FVDTFRLFHPEPE---KYTW 205 (261)
T ss_pred EEEecccccCCchhcccCchhhhh-------------cCCCCCCCHHHHHHHHHHHHcc-hhhhhHhhCCCCC---cccc
Confidence 9999999999999999988 4442 3467899999999999999998 9999999999984 5999
Q ss_pred cCCCCC-CcCCCcceeeEEEeChhhhhceeeEEEecCCcCCCCCCCCCcCceEEEEec
Q 026782 162 SGNPIG-KYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELSE 218 (233)
Q Consensus 162 ~~~~~~-~~~~~~~RID~i~vs~~l~~~v~~~~i~~~~~~~~~~~~SDH~PV~~~l~~ 218 (233)
|+++.+ ...+.|+|||||++|+.|+.++++|.|+.... ....+||||||+++|++
T Consensus 206 W~YR~~~~~~n~G~RID~~l~S~~L~~~~~~a~I~~~~r--g~e~pSDHaPV~~e~~~ 261 (261)
T COG0708 206 WDYRANAARRNRGWRIDYILVSPALADRLKDAGIDREVR--GWEKPSDHAPVWVELDL 261 (261)
T ss_pred cccccchhhhcCceeEEEEEeCHHHHHHHHhcCccHHHh--cCCCCCCcCcEEEEecC
Confidence 999766 34678999999999999999999999997421 12467999999999864
No 2
>PRK13911 exodeoxyribonuclease III; Provisional
Probab=100.00 E-value=3.7e-40 Score=274.87 Aligned_cols=184 Identities=34% Similarity=0.637 Sum_probs=158.3
Q ss_pred EEEEEeecccCeeeeccCCCCCCCCCCCCEEEEEECCEEEEEEEecCCCCCCccchHHHHHHHHHHHHHHHHhc-CCCCE
Q 026782 5 ICLFYVCLCNNSSVFHFLLSALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPL 83 (233)
Q Consensus 5 ~~~i~sr~~~~~~~~~~~~~~~~~d~~gR~i~~~~~~~~l~nvy~P~~~~~~~~~~~~~r~~~~~~l~~~l~~~-~~~~v 83 (233)
||||+||.+|..+.++++. ...|.|||+|.++++.|+|+|+|+|+++.. .+++++|.+|++.+.++++.. .+.++
T Consensus 64 GVAi~~k~~~~~v~~~~~~--~~~d~eGR~I~~~~~~~~l~nvY~Pn~~~~--~~r~~~K~~~~~~~~~~l~~l~~~~~~ 139 (250)
T PRK13911 64 GVVTFTKKEPLSVSYGINI--EEHDKEGRVITCEFESFYLVNVYTPNSQQA--LSRLSYRMSWEVEFKKFLKALELKKPV 139 (250)
T ss_pred eEEEEEcCCchheEEcCCC--CcccccCCEEEEEECCEEEEEEEecCCCCC--CcchHHHHHHHHHHHHHHHhcccCCCE
Confidence 9999999999889888864 357889999999999999999999999864 347888999999999999864 45699
Q ss_pred EEEcCCCccCCCCcCCChhhhhhhhcCCCCCCCCCCCCCCCCCHHHHHHHHHHHhcCCeeEeeeccCCCCCCCCceeccC
Q 026782 84 IWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSG 163 (233)
Q Consensus 84 Ii~GDFN~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~er~~~~~l~~~~~l~D~~r~~~p~~~~~~~~T~~~ 163 (233)
|+|||||+++.++|.+++.. +.+..+|+++||++|.++++.| |+|+||.+||... ..||||+
T Consensus 140 Ii~GD~Nva~~~~D~~~~~~---------------~~~~~gf~~~er~~f~~~l~~g-l~D~~R~~~p~~~--~~yTww~ 201 (250)
T PRK13911 140 IVCGDLNVAHNEIDLENPKT---------------NRKNAGFSDEERGKFSELLNAG-FIDTFRYFYPNKE--KAYTWWS 201 (250)
T ss_pred EEEccccCCCChhhccChhh---------------cCCCCCcCHHHHHHHHHHHhcC-CeehhhhhCCCCC--CCCccCC
Confidence 99999999999999988642 2356789999999999999975 9999999999853 4699998
Q ss_pred CCCC-CcCCCcceeeEEEeChhhhhceeeEEEecCCcCCCCCCCCCcCceEEEE
Q 026782 164 NPIG-KYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 216 (233)
Q Consensus 164 ~~~~-~~~~~~~RID~i~vs~~l~~~v~~~~i~~~~~~~~~~~~SDH~PV~~~l 216 (233)
+..+ ...|.|+||||||+|+++..++.+|.|... ..+|||+||++++
T Consensus 202 ~~~~~~~~n~g~RIDyilvs~~~~~~~~~~~i~~~------~~~SDH~Pv~~~~ 249 (250)
T PRK13911 202 YMQQARDKNIGWRIDYFLCSNPLKTRLKDALIYKD------ILGSDHCPVGLEL 249 (250)
T ss_pred CcCCccccCCcceEEEEEEChHHhhhEEEEEECCC------CCCCCcccEEEEe
Confidence 7543 346789999999999999999999998653 5789999999987
No 3
>PRK11756 exonuclease III; Provisional
Probab=100.00 E-value=3.8e-35 Score=247.76 Aligned_cols=199 Identities=21% Similarity=0.312 Sum_probs=152.5
Q ss_pred eEEEEEeecccCeeeeccCCCCCCCCCCCCEEEEEEC----CEEEEEEEecCCCCCCccchHHHHHHHHHHHHHHHHhc-
Q 026782 4 FICLFYVCLCNNSSVFHFLLSALKYEPDGRVILAEFE----TFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC- 78 (233)
Q Consensus 4 ~~~~i~sr~~~~~~~~~~~~~~~~~d~~gR~i~~~~~----~~~l~nvy~P~~~~~~~~~~~~~r~~~~~~l~~~l~~~- 78 (233)
.|||||||+|+..+...++.. ..+.+||+|.+++. .+.++|+|+|++....+..++++|.+|++.|..++++.
T Consensus 63 ~GvailSr~p~~~~~~~~~~~--~~~~~~r~l~~~i~~~~g~~~v~n~y~P~~~~~~~~~~~~~r~~~~~~l~~~l~~~~ 140 (268)
T PRK11756 63 YGVALLSKQTPIAVRKGFPTD--DEEAQRRIIMATIPTPNGNLTVINGYFPQGESRDHPTKFPAKRQFYQDLQNYLETEL 140 (268)
T ss_pred CEEEEEECCChHHeEECCCCc--cccccCCEEEEEEEcCCCCEEEEEEEecCCCCCCcchhHHHHHHHHHHHHHHHHHHh
Confidence 599999999998877777642 24568999999884 69999999999875333345566888999999888753
Q ss_pred -CCCCEEEEcCCCccCCCCcCCChhhhhhhhcCCCCCCCCCCCCCCCCCHHHHHHHHHHHhcCCeeEeeeccCCCCCCCC
Q 026782 79 -SGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDC 157 (233)
Q Consensus 79 -~~~~vIi~GDFN~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~er~~~~~l~~~~~l~D~~r~~~p~~~~~~ 157 (233)
.+.|+|+|||||+++.++|.+.+... .+.. ...+..+++++||++++.+++.| |+|+||.+||... .
T Consensus 141 ~~~~pvIl~GDfN~~~~~~D~~~~~~~--~~~~-------~~~~~~~~~~~er~~~~~l~~~~-l~D~~R~~~p~~~--~ 208 (268)
T PRK11756 141 SPDNPLLIMGDMNISPTDLDIGIGEEN--RKRW-------LRTGKCSFLPEEREWLDRLMDWG-LVDTFRQLNPDVN--D 208 (268)
T ss_pred ccCCCEEEEeecccCCChhhcCCcccC--hHHh-------cccCCccCCHHHHHHHHHHHhCC-cEeehhhhCCCCC--C
Confidence 46799999999999998888643210 0000 00134678999999999988765 9999999999732 5
Q ss_pred ceeccCCCCCC-cCCCcceeeEEEeChhhhhceeeEEEecCCcCCCCCCCCCcCceEEEEec
Q 026782 158 GFSWSGNPIGK-YRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELSE 218 (233)
Q Consensus 158 ~~T~~~~~~~~-~~~~~~RID~i~vs~~l~~~v~~~~i~~~~~~~~~~~~SDH~PV~~~l~~ 218 (233)
.|||+++..+. ..+.|+||||||+|+.+..++++|.|..... ...++||||||+++|++
T Consensus 209 ~~T~~~~~~~~~~~~~g~RIDyi~~s~~~~~~v~~~~i~~~~~--~~~~~SDH~PV~~~~~~ 268 (268)
T PRK11756 209 RFSWFDYRSKGFDDNRGLRIDLILATQPLAERCVETGIDYDIR--GMEKPSDHAPIWATFKL 268 (268)
T ss_pred cccCcCCcccccccCCceEEEEEEeCHHHHhhheEeEEeHHHh--CCCCCCCcccEEEEEeC
Confidence 79998876543 2467899999999999999999999986421 13468999999999874
No 4
>TIGR00195 exoDNase_III exodeoxyribonuclease III. The model brings in reverse transcriptases at scores below 50, model also contains eukaryotic apurinic/apyrimidinic endonucleases which group in the same family
Probab=100.00 E-value=2.9e-33 Score=234.45 Aligned_cols=189 Identities=30% Similarity=0.564 Sum_probs=150.9
Q ss_pred eEEEEEeecccCeeeeccCCCCCCCCCCCCEEEEEECCEEEEEEEecCCCCCCccchHHHHHHHHHHHHHHHHhc--CCC
Q 026782 4 FICLFYVCLCNNSSVFHFLLSALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC--SGK 81 (233)
Q Consensus 4 ~~~~i~sr~~~~~~~~~~~~~~~~~d~~gR~i~~~~~~~~l~nvy~P~~~~~~~~~~~~~r~~~~~~l~~~l~~~--~~~ 81 (233)
-||||+||.++..+.++++. ...|.+||++.++++.+.++|+|+|+++... .+++.+|.+|++.|..++++. .+.
T Consensus 63 ~Gvailsr~~~~~~~~~~~~--~~~~~~~r~i~~~~~~~~l~~~~~p~~~~~~-~~~~~~r~~~~~~l~~~~~~~~~~~~ 139 (254)
T TIGR00195 63 SGVAIFSKEEPLSVRRGFGV--EEEDAEGRIIMAEFDSFLVINGYFPNGSRDD-SEKLPYKLQWLEALQNYLEKLVDKDK 139 (254)
T ss_pred ceEEEEEcCCcceEEECCCC--cccccCCCEEEEEECCEEEEEEEccCCCCCC-CccHHHHHHHHHHHHHHHHHHHhcCC
Confidence 38999999877777765543 2356899999999999999999999975432 345677899999999998764 457
Q ss_pred CEEEEcCCCccCCCCcCCChhhhhhhhcCCCCCCCCCCCCCCCCCHHHHHHHHHHHhcCCeeEeeeccCCCCCCCCceec
Q 026782 82 PLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSW 161 (233)
Q Consensus 82 ~vIi~GDFN~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~er~~~~~l~~~~~l~D~~r~~~p~~~~~~~~T~ 161 (233)
|+|+|||||+++.++|..++.. +.+..+|+++|++.++++++.+ |+|+||..+|.. ..|||
T Consensus 140 pvIi~GDfN~~~~~~d~~~~~~---------------~~~~~~~~~~e~~~~~~l~~~~-l~D~~r~~~~~~---~~~T~ 200 (254)
T TIGR00195 140 PVLICGDMNIAPTEIDLHSPDE---------------NRNHTGFLPEEREWLDRLLEAG-LVDTFRKFNPDE---GAYSW 200 (254)
T ss_pred cEEEEeecccCCChhhccChhh---------------cCCCcCcChHHHHHHHHHHHcC-CEeeecccCCCC---CCCcc
Confidence 9999999999999888876532 1245678999999999999766 999999999975 57999
Q ss_pred cCCCCCC-cCCCcceeeEEEeChhhhhceeeEEEecCCcCCCCCCCCCcCceEEEE
Q 026782 162 SGNPIGK-YRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLEL 216 (233)
Q Consensus 162 ~~~~~~~-~~~~~~RID~i~vs~~l~~~v~~~~i~~~~~~~~~~~~SDH~PV~~~l 216 (233)
+++.... ..+.++||||||+|+++..++.+|.|.+... ...++|||+||+++|
T Consensus 201 ~~~~~~~~~~~~g~RID~i~~s~~~~~~v~~~~i~~~~~--~~~~~SDH~Pv~~~~ 254 (254)
T TIGR00195 201 WDYRTKARDRNRGWRIDYFLVSEPLKERCVDCGIDYDIR--GSEKPSDHCPVVLEF 254 (254)
T ss_pred cCCcCCccccCCceEEEEEEECHHHHhhhhEEEEcHHHh--cCCCCCCcccEEEeC
Confidence 8865432 2467899999999999999999999986321 124789999999875
No 5
>TIGR00633 xth exodeoxyribonuclease III (xth). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.97 E-value=5.6e-30 Score=214.07 Aligned_cols=187 Identities=33% Similarity=0.622 Sum_probs=144.8
Q ss_pred eEEEEEeecccCeeeeccCCCCCCCCCCCCEEEEEECCEEEEEEEecCCCCCCccchHHHHHHHHHHHHHHHHh--cCCC
Q 026782 4 FICLFYVCLCNNSSVFHFLLSALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQ--CSGK 81 (233)
Q Consensus 4 ~~~~i~sr~~~~~~~~~~~~~~~~~d~~gR~i~~~~~~~~l~nvy~P~~~~~~~~~~~~~r~~~~~~l~~~l~~--~~~~ 81 (233)
-||||+||.|+..+..+++. ...+.+||++.+++++++|+|+|+|+++... ..+.++|.++++.+.+.+.+ ..+.
T Consensus 66 ~G~ailsr~~~~~~~~~~~~--~~~~~~~r~l~~~~~~~~i~~vy~p~~~~~~-~~~~~~r~~~~~~l~~~~~~~~~~~~ 142 (255)
T TIGR00633 66 SGVAILSKVEPLDVRYGFGG--EEHDEEGRVITAEFDGFTVVNVYVPNGGSRG-LERLEYKLQFWDALFQYYEKELDAGK 142 (255)
T ss_pred ceEEEEEcCCcceEEECCCC--CcccCCCcEEEEEECCEEEEEEEccCCCCCC-chhHHHHHHHHHHHHHHHHHHHhcCC
Confidence 48999999999888776553 3467899999999999999999999987322 23445677788777766543 2467
Q ss_pred CEEEEcCCCccCCCCcCCChhhhhhhhcCCCCCCCCCCCCCCCCCHHHHHHHHHHHhcCCeeEeeeccCCCCCCCCceec
Q 026782 82 PLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSW 161 (233)
Q Consensus 82 ~vIi~GDFN~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~er~~~~~l~~~~~l~D~~r~~~p~~~~~~~~T~ 161 (233)
++|+|||||+++..+|..++.. +.+..++++.++..|+++++.+ |+|+||..+|... ..|||
T Consensus 143 ~~Il~GDFN~~~~~~d~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~~-l~D~~~~~~~~~~--~~~T~ 204 (255)
T TIGR00633 143 PVIICGDMNVAHTEIDLGNPKE---------------NKGNAGFTPEEREWFDELLEAG-LVDTFRHFNPDTE--GAYTW 204 (255)
T ss_pred cEEEEeecccCCChHHccChhh---------------cCCCCCcCHHHHHHHHHHHHcC-CEecchhhCCCCC--CcCcC
Confidence 9999999999998878765421 1234567888888999999865 9999999999763 37999
Q ss_pred cCCCCCC-cCCCcceeeEEEeChhhhhceeeEEEecCCcCCCCCCCCCcCceEEEEe
Q 026782 162 SGNPIGK-YRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 217 (233)
Q Consensus 162 ~~~~~~~-~~~~~~RID~i~vs~~l~~~v~~~~i~~~~~~~~~~~~SDH~PV~~~l~ 217 (233)
++..+.. ..+.+.||||||+++.+..++.++.|... ..+|||+||+++|+
T Consensus 205 ~~~~~~~~~~~~~~rID~i~~s~~~~~~~~~~~i~~~------~~~SDH~pv~~~~~ 255 (255)
T TIGR00633 205 WDYRSGARDRNRGWRIDYFLVSEPLAERVVDSYIDSE------IRGSDHCPIVLELD 255 (255)
T ss_pred cCCccCccccCCceEEEEEEECHHHHhhhcEeEECCC------CCCCCcccEEEEEC
Confidence 8865332 23567899999999999888899998753 34599999999873
No 6
>KOG1294 consensus Apurinic/apyrimidinic endonuclease and related enzymes [Replication, recombination and repair]
Probab=99.87 E-value=2.1e-21 Score=166.18 Aligned_cols=197 Identities=39% Similarity=0.580 Sum_probs=153.3
Q ss_pred ceEEEEEeecccCeeeeccCCCCCCCCCCCCEEEEEECCEEEEEEEecCCCCCCccchHHHH--HHHHHHHHHHHHhcC-
Q 026782 3 LFICLFYVCLCNNSSVFHFLLSALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRR--RKWDKRIQEFVLQCS- 79 (233)
Q Consensus 3 ~~~~~i~sr~~~~~~~~~~~~~~~~~d~~gR~i~~~~~~~~l~nvy~P~~~~~~~~~~~~~r--~~~~~~l~~~l~~~~- 79 (233)
.-+++.+++..+..+.+++....+.+++.||+|.+++..+.++|.|+|+...... ..+++ ..|...+...+.+..
T Consensus 130 y~~~~~~~~~~p~~v~~~~~~~~s~h~~~g~~i~~e~e~~~l~~~y~p~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 207 (335)
T KOG1294|consen 130 YSGEIDYSKFKPLKVHYGFGAMGSDHRPVGRVIIAEFEIFILINTYVPNIGGGLV--NLVYRILDRWDKEIEEKRKKQSS 207 (335)
T ss_pred ccceeeeeecccceeeecccccCCccCccceEEEEeecceeeccccCcccccccc--hhhhhhhhhhHHHHHHHhhhccc
Confidence 3478899999999999988744467999999999999999999999999886543 23344 566666766665432
Q ss_pred ----CCCEEEEcCCCccCCCCcCCChhhhhhhhcCCCCCCCCCCCCCCCCCHHHHHHH-HHHHhcCCeeEeeeccCCCCC
Q 026782 80 ----GKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRF-GAILKEGRLIDAYRFLHKEKD 154 (233)
Q Consensus 80 ----~~~vIi~GDFN~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~er~~~-~~l~~~~~l~D~~r~~~p~~~ 154 (233)
..+++++||.|+.+..+|...+- +.....-..++++++++|.++ ..+++.+.++|+||+.+++..
T Consensus 208 ~k~~~~~~v~~gd~nvs~~~i~~~~~~----------~~~~~~~~~~~~~t~e~R~~~~~~~~~~~~~iDt~r~~~~~~~ 277 (335)
T KOG1294|consen 208 SKNLKAPVVICGDLNVSHEEIDPSKPL----------VSPAGNTLSNAGFTPEERDSFFAELLEKGPLIDTYRELHKDQK 277 (335)
T ss_pred cccccCcceeccccccchhhccccccc----------cccccCCcCCCCCCHHHhhhHHHhhccCCcceeehhhhcCCcc
Confidence 24799999999999888853211 000011125678999999999 688888889999999999874
Q ss_pred CCCceeccC-CCCCCcCCCcceeeEEEeChhhhhceeeEEEecCCcCCCCCCCCCcCceEEEEec
Q 026782 155 MDCGFSWSG-NPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELSE 218 (233)
Q Consensus 155 ~~~~~T~~~-~~~~~~~~~~~RID~i~vs~~l~~~v~~~~i~~~~~~~~~~~~SDH~PV~~~l~~ 218 (233)
..||+|. ...++.++.++|+||++|++...+.+.+++|..++ ..+|||||+++.|.+
T Consensus 278 --~~~t~Wk~~~~~r~~~~~~r~dy~~Vsk~~~n~~r~~~Ic~r~-----~~gsdh~pi~~~~~~ 335 (335)
T KOG1294|consen 278 --KAYTFWKYMPNGRQRGHGERCDYILVSKPGPNNGRRFYICSRP-----IHGSDHCPITLEFFL 335 (335)
T ss_pred --ccccchhhccccccCCCCCceeEEEecCcCCCCCceeeeecCc-----cCCCCCCCeeeeecC
Confidence 3576555 45566778899999999999999999999999764 589999999998853
No 7
>COG3568 ElsH Metal-dependent hydrolase [General function prediction only]
Probab=99.70 E-value=1.8e-16 Score=130.87 Aligned_cols=161 Identities=18% Similarity=0.141 Sum_probs=98.5
Q ss_pred ceEEEEEeecccCeeee-ccCCCCCCCCCCCC-EEEEEEC-----CEEEEEEEecCCCCCCccchHHHHHHHHHHHHHHH
Q 026782 3 LFICLFYVCLCNNSSVF-HFLLSALKYEPDGR-VILAEFE-----TFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFV 75 (233)
Q Consensus 3 ~~~~~i~sr~~~~~~~~-~~~~~~~~~d~~gR-~i~~~~~-----~~~l~nvy~P~~~~~~~~~~~~~r~~~~~~l~~~l 75 (233)
-+|+|||||.|+..+.- .+|.. ...++| ++.++++ .+.|+|+|+--.. +.|.+.++.|...+
T Consensus 91 ~~GnaiLS~~pi~~v~~~~lp~~---~~~~~Rgal~a~~~~~~g~~l~V~~~HL~l~~--------~~R~~Q~~~L~~~~ 159 (259)
T COG3568 91 QHGNAILSRLPIRDVENLALPDP---TGLEPRGALLAEIELPGGKPLRVINAHLGLSE--------ESRLRQAAALLALA 159 (259)
T ss_pred eeeeEEEecCcccchhhccCCCC---CCCCCceeEEEEEEcCCCCEEEEEEEeccccH--------HHHHHHHHHHHhhc
Confidence 36999999999876653 46531 234666 6666553 7999999996222 12555566665532
Q ss_pred HhcCCCCEEEEcCCCccCCCCcCCChhhhhhhhcCCCCCCCCCCCCCCCCCHHHHHHHHHHHhcCCeeEeeeccCCCCCC
Q 026782 76 LQCSGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDM 155 (233)
Q Consensus 76 ~~~~~~~vIi~GDFN~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~er~~~~~l~~~~~l~D~~r~~~p~~~~ 155 (233)
.-....|+|+|||||+.+...+..-. ..+ .+... ..+.+++....+..
T Consensus 160 ~l~~~~p~vl~GDFN~~p~s~~yr~~-------------------~~~--------~~~~~---~~~~~~~~~a~~~~-- 207 (259)
T COG3568 160 GLPALNPTVLMGDFNNEPGSAEYRLA-------------------ARS--------PLNAQ---AALTGAFAPAVGRT-- 207 (259)
T ss_pred cCcccCceEEEccCCCCCCCccceec-------------------cCC--------chhhc---cccccccCcccCcc--
Confidence 21234599999999998875433210 000 01111 12445444333321
Q ss_pred CCceeccCCCCCCcCCCcceeeEEEeChhhhhceeeEEEecCCcCCCCCCCCCcCceEEEEecc
Q 026782 156 DCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELSEA 219 (233)
Q Consensus 156 ~~~~T~~~~~~~~~~~~~~RID~i~vs~~l~~~v~~~~i~~~~~~~~~~~~SDH~PV~~~l~~~ 219 (233)
.-||.++.. ..||||||+|+.+. +..+++..+.- ....|||+||.++|.++
T Consensus 208 --~~tfps~~p------~lriD~Ifvs~~~~--i~~~~v~~~~~---a~~aSDHlPl~aeL~~~ 258 (259)
T COG3568 208 --IRTFPSNTP------LLRLDRIFVSKELA--IRSVHVLTDRL---ARVASDHLPLLAELRLK 258 (259)
T ss_pred --cCCCCCCCc------cccccEEEecCccc--EEEEEeecCCC---ccccccccceEEEEecC
Confidence 236766432 25999999999887 55667766431 24689999999999875
No 8
>PRK05421 hypothetical protein; Provisional
Probab=99.67 E-value=1.8e-15 Score=127.49 Aligned_cols=150 Identities=15% Similarity=0.107 Sum_probs=90.8
Q ss_pred ceEEEEEeecccCeeeeccCCCCCCCCCCCC-EEEEEEC-----CEEEEEEEecCCCCCCccchHHHHHHHHHHHHHHHH
Q 026782 3 LFICLFYVCLCNNSSVFHFLLSALKYEPDGR-VILAEFE-----TFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVL 76 (233)
Q Consensus 3 ~~~~~i~sr~~~~~~~~~~~~~~~~~d~~gR-~i~~~~~-----~~~l~nvy~P~~~~~~~~~~~~~r~~~~~~l~~~l~ 76 (233)
-.|||||||+|+..+... +.. ...-..+| ++.+++. .+.++|+|+++.+... +.|...++.|.++++
T Consensus 107 ~~GvaiLSR~pi~~~~~~-~~~-~~~~~~~r~~l~a~~~~~~g~~l~v~ntHl~~~~~~~-----~~r~~q~~~l~~~~~ 179 (263)
T PRK05421 107 PSGVMTLSKAHPVYCCPL-RER-EPWLRLPKSALITEYPLPNGRTLLVVNIHAINFSLGV-----DVYSKQLEPIGDQIA 179 (263)
T ss_pred ccceeEeeecccceeecc-CCC-CccccCcceeEEEEEEeCCCCEEEEEEECccccCcCh-----HHHHHHHHHHHHHHH
Confidence 369999999999765432 211 11112345 4455542 4999999997653221 224555666777775
Q ss_pred hcCCCCEEEEcCCCccCCCCcCCChhhhhhhhcCCCCCCCCCCCCCCCCCHHHHHHHHHHHhcCCeeEeeeccCCCCCCC
Q 026782 77 QCSGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMD 156 (233)
Q Consensus 77 ~~~~~~vIi~GDFN~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~er~~~~~l~~~~~l~D~~r~~~p~~~~~ 156 (233)
.. ..|+|+|||||+.... ....+..+.+..++.|++ .+...
T Consensus 180 ~~-~~p~Il~GDFN~~~~~---------------------------------~~~~l~~~~~~~~l~~~~---~~~~~-- 220 (263)
T PRK05421 180 HH-SGPVILAGDFNTWSRK---------------------------------RMNALKRFARELGLKEVR---FTDDQ-- 220 (263)
T ss_pred hC-CCCEEEEcccccCccc---------------------------------chHHHHHHHHHcCCCccC---cCCcc--
Confidence 43 5699999999973210 012344555444465542 11110
Q ss_pred CceeccCCCCCCcCCCcceeeEEEeChhhhhceeeEEEecCCcCCCCCCCCCcCceEEEEecc
Q 026782 157 CGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELSEA 219 (233)
Q Consensus 157 ~~~T~~~~~~~~~~~~~~RID~i~vs~~l~~~v~~~~i~~~~~~~~~~~~SDH~PV~~~l~~~ 219 (233)
...+| +.||||||++ .+ .+.++.+.. ...|||+||+++|.+.
T Consensus 221 ~~~~~-----------~~~ID~I~~~-~~--~v~~~~v~~-------~~~SDH~Pv~a~l~l~ 262 (263)
T PRK05421 221 RRRAF-----------GRPLDFVFYR-GL--NVSKASVLV-------TRASDHNPLLVEFSLK 262 (263)
T ss_pred ccccc-----------CCCcceEEEC-Cc--EEEEEEcCC-------CCCCCccCEEEEEEec
Confidence 01111 3699999995 44 477788763 4789999999999875
No 9
>PF14529 Exo_endo_phos_2: Endonuclease-reverse transcriptase ; PDB: 2EI9_A 1WDU_B.
Probab=99.64 E-value=1.5e-15 Score=112.32 Aligned_cols=119 Identities=23% Similarity=0.399 Sum_probs=67.2
Q ss_pred EEEEEEEecCCCCCCccchHHHHHHHHHHHHHHHHhcCCCCEEEEcCCCccCCCCcCCChhhhhhhhcCCCCCCCCCCCC
Q 026782 42 FYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWG 121 (233)
Q Consensus 42 ~~l~nvy~P~~~~~~~~~~~~~r~~~~~~l~~~l~~~~~~~vIi~GDFN~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~ 121 (233)
+.|+|||+|... . +..+.+.|.++++.....++||+||||+.+..++.....
T Consensus 1 i~i~~vY~pp~~-~--------~~~~~~~l~~~~~~~~~~~~Ii~GDFN~~~~~w~~~~~~------------------- 52 (119)
T PF14529_consen 1 ITIISVYAPPSS-E--------REEFFDQLRQLLKNLPPAPIIIGGDFNAHHPNWDSSNTN------------------- 52 (119)
T ss_dssp EEEEEEE--TTS----------CHHHHHHHHHHHHCCTTSSEEEEEE-----GGGT-SCHH-------------------
T ss_pred CEEEEEECCCCc-c--------HHHHHHHHHHHHHhCCCCCEEEEeECCCCchhhhhcccc-------------------
Confidence 579999999987 1 356778888888754444999999999965544332210
Q ss_pred CCCCCHHHHHHHHHHHhcCCeeEeeeccCCCCCCCCceeccCCCCCCcCCCcceeeEEEeChhhhhceeeEEEecCCcCC
Q 026782 122 QPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIEL 201 (233)
Q Consensus 122 ~~~~~~~er~~~~~l~~~~~l~D~~r~~~p~~~~~~~~T~~~~~~~~~~~~~~RID~i~vs~~l~~~v~~~~i~~~~~~~ 201 (233)
....+.+.++++..+|.++ ++.. ..+||.+..+ +++||++|++..+... ..+.+..
T Consensus 53 -----~~~~~~l~~~~~~~~l~~~----~~~~---~~~T~~~~~~------~s~iD~~~~s~~~~~~-~~~~~~~----- 108 (119)
T PF14529_consen 53 -----SRRGEQLLDWLDSHNLVDL----NPPG---RPPTFISNSH------GSRIDLILTSDNLLSW-CVWVISS----- 108 (119)
T ss_dssp -----HHHHHHHHHHHHHCTEEE-------TT------SEEECCC------EE--EEEEEECCGCCC-EEEEEET-----
T ss_pred -----chhHHHHHHHhhhceeeee----ecCC---CCCcccCCCC------CceEEEEEECChHHhc-CcEEEeC-----
Confidence 0234566777777779887 2222 2588876432 5899999999999865 2233332
Q ss_pred CCCCCCCcCceE
Q 026782 202 EGFYGSDHCPVS 213 (233)
Q Consensus 202 ~~~~~SDH~PV~ 213 (233)
....|||+||+
T Consensus 109 -~~~~SDH~~I~ 119 (119)
T PF14529_consen 109 -DDSGSDHCPIT 119 (119)
T ss_dssp -TSSSSSB--EE
T ss_pred -CCCCCCccCCC
Confidence 25789999985
No 10
>PRK15251 cytolethal distending toxin subunit CdtB; Provisional
Probab=99.58 E-value=4.6e-14 Score=117.53 Aligned_cols=81 Identities=11% Similarity=0.036 Sum_probs=60.3
Q ss_pred ceEEEEEeecccCeeee-ccCCCCCCCCCCCCEEEEEECCEEEEEEEecCCCCCCccchHHHHHHHHHHHHHHHH-hcCC
Q 026782 3 LFICLFYVCLCNNSSVF-HFLLSALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVL-QCSG 80 (233)
Q Consensus 3 ~~~~~i~sr~~~~~~~~-~~~~~~~~~d~~gR~i~~~~~~~~l~nvy~P~~~~~~~~~~~~~r~~~~~~l~~~l~-~~~~ 80 (233)
=+|+||+||+|+.++.. ..|. -.+..++.++++.+.++++|+++.+..+ +.+..+.+.++.. +...
T Consensus 117 r~glAIlSr~~a~~~~~l~~p~-----~~~Rpilgi~i~~~~ffstH~~a~~~~d-------a~aiV~~I~~~f~~~~~~ 184 (271)
T PRK15251 117 RVNLAIVSRRRADEVIVLRPPT-----VASRPIIGIRIGNDVFFSIHALANGGTD-------AGAIVRAVHNFFRPNMRH 184 (271)
T ss_pred ceeEEEEecccccceEEecCCC-----CcccceEEEEecCeEEEEeeecCCCCcc-------HHHHHHHHHHHHhhccCC
Confidence 36999999999887654 3442 1344588999999999999999885321 5566777777775 4345
Q ss_pred CCEEEEcCCCccCCC
Q 026782 81 KPLIWCGDLNVSHEE 95 (233)
Q Consensus 81 ~~vIi~GDFN~~~~~ 95 (233)
.+++||||||..+..
T Consensus 185 ~pw~I~GDFNr~P~s 199 (271)
T PRK15251 185 INWMIAGDFNRSPDR 199 (271)
T ss_pred CCEEEeccCCCCCcc
Confidence 799999999987754
No 11
>TIGR03395 sphingomy sphingomyelin phosphodiesterase. Members of this family are bacterial proteins that act as sphingomyelin phosphodiesterase (EC 3.1.4.12), also called sphingomyelinase. Some members of this family have been shown to act as hemolysins.
Probab=99.57 E-value=8.4e-14 Score=118.43 Aligned_cols=90 Identities=13% Similarity=0.078 Sum_probs=57.4
Q ss_pred eEEEEEeecccCeeee-ccCCCCCCCC--CCCCEEEEEEC----CEEEEEEEecCCCCCCcc-chHHHHHHHHHHHHHHH
Q 026782 4 FICLFYVCLCNNSSVF-HFLLSALKYE--PDGRVILAEFE----TFYLLNTYAPNNGWKEEE-NSFQRRRKWDKRIQEFV 75 (233)
Q Consensus 4 ~~~~i~sr~~~~~~~~-~~~~~~~~~d--~~gR~i~~~~~----~~~l~nvy~P~~~~~~~~-~~~~~r~~~~~~l~~~l 75 (233)
.|++||||+|+..... .++... ..| ....++.+++. .+.|+|+|+.+....... .....|...++.|.+++
T Consensus 91 ~G~~iLSr~Pi~~~~~~~f~~~~-~~d~~~~kg~l~a~i~~~g~~~~v~~THL~~~~~~~~~~~~~~~R~~Q~~~i~~~i 169 (283)
T TIGR03395 91 GGVAIVSKWPIEEKIQYIFNKGC-GADNLSNKGFAYVKINKNGKKFHVIGTHLQAQDSMCSKLGPASIRANQLNEIQDFI 169 (283)
T ss_pred CEEEEEECCCccccEEEEccCCC-CCccccCCceEEEEEecCCeEEEEEEeCCCCCcccccccccHHHHHHHHHHHHHHH
Confidence 3999999999876543 343211 111 12346777664 699999999765421100 01234777788888888
Q ss_pred Hhc---CCCCEEEEcCCCccCC
Q 026782 76 LQC---SGKPLIWCGDLNVSHE 94 (233)
Q Consensus 76 ~~~---~~~~vIi~GDFN~~~~ 94 (233)
+.. .+.++|||||||+.+.
T Consensus 170 ~~~~~~~~~pvIl~GDfN~~~~ 191 (283)
T TIGR03395 170 DSKNIPKDETVLIGGDLNVNKG 191 (283)
T ss_pred hhccCCCCceEEEEeeCCCCCC
Confidence 642 3568999999999653
No 12
>PTZ00297 pantothenate kinase; Provisional
Probab=99.51 E-value=7.6e-13 Score=132.44 Aligned_cols=187 Identities=14% Similarity=0.082 Sum_probs=97.0
Q ss_pred EEEEEeecccCeeee-ccCCCCCCCCCCCC-EEEEEE---------CCEEEEEEEecCCCCCCccchHHHHHHHHHHHHH
Q 026782 5 ICLFYVCLCNNSSVF-HFLLSALKYEPDGR-VILAEF---------ETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQE 73 (233)
Q Consensus 5 ~~~i~sr~~~~~~~~-~~~~~~~~~d~~gR-~i~~~~---------~~~~l~nvy~P~~~~~~~~~~~~~r~~~~~~l~~ 73 (233)
|+||+||+|+.++.. .++......+.+.| ++.+++ +.+.++|+|+-....... |.+...++.+
T Consensus 104 G~AILSR~PI~~~~~~~l~~~~~~~~~~~RG~L~a~I~vp~~~g~~~~v~v~~tHL~~~~~~~~------R~~Q~~ql~~ 177 (1452)
T PTZ00297 104 GLIIASRFPIWQRGSYTFRNHERGEQSVRRGCLFAEVEVPLAEGGSQRIVFFNVHLRQEDSLPS------TSSQVQETRR 177 (1452)
T ss_pred EEEEEECCChhhceeeecCcccccccccccceEEEEEEccccCCCCceEEEEEeCCCCCCCcch------HHHHHHHHHH
Confidence 999999999987653 45521111111233 455544 259999999976543211 3333444444
Q ss_pred HHHh----------c-CCCCEEEEcCCCccCCCCcCCChhhhhhhhcCCCCCCCCCCCCCCCCCHHHHHHHHHHHhc-CC
Q 026782 74 FVLQ----------C-SGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKE-GR 141 (233)
Q Consensus 74 ~l~~----------~-~~~~vIi~GDFN~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~er~~~~~l~~~-~~ 141 (233)
++.. . .+.|+||+||||+.- +|..+. ..-+++-...+..+... ++
T Consensus 178 ~i~~~i~~~~~~~~~~~~~PvILaGDFN~~~--~~~~~~---------------------~~~s~e~~~ml~~l~~~~~~ 234 (1452)
T PTZ00297 178 FVESVIANVYEQNNDGAEIPFVIAGDFNING--IDPHNG---------------------GHPTKRFQELLNELQDLGSG 234 (1452)
T ss_pred HHHHhhhhhcccccCCCCCCEEEEeeCCCcc--cccccc---------------------CCccHHHHHHHHHhhhcccc
Confidence 4432 1 346899999999842 111100 00011112223333321 22
Q ss_pred eeEeeeccCCCCC-CCCceeccCCCC-C-CcCCCcceeeEEEeChhhhhceeeEEEecCCc--CCCCCCCCCcCceEEEE
Q 026782 142 LIDAYRFLHKEKD-MDCGFSWSGNPI-G-KYRGKRMRIDYFIVSEELKDRIIACEMQGHGI--ELEGFYGSDHCPVSLEL 216 (233)
Q Consensus 142 l~D~~r~~~p~~~-~~~~~T~~~~~~-~-~~~~~~~RID~i~vs~~l~~~v~~~~i~~~~~--~~~~~~~SDH~PV~~~l 216 (233)
+.|++...+.... ..+..+|+.... . +......||||||+++.+. +.++.|..... ..++.+.|||+||+++|
T Consensus 235 l~dv~~~~~~~~~~T~p~~~~fP~~~p~~~~~~~~~riD~Ifv~~~v~--v~~~~v~~~~~~~~~~~~~~SDH~Pv~a~l 312 (1452)
T PTZ00297 235 VREVIYDETGQHPPTRPPILFFPEQSKLERYSSTPQRQDYFFVTPCVQ--VEKPRIEKFVVSSRRPYTYLSDHFGVSARL 312 (1452)
T ss_pred HhHHhHhhcCCCCCCCCccccccccCccccccCCCcceeEEEEeCCce--EEEEEEecccccCCCCCCCcCcCccEEEEE
Confidence 5665543332211 001234333110 0 0111236999999998764 66777743200 01246799999999999
Q ss_pred eccCCC
Q 026782 217 SEASSD 222 (233)
Q Consensus 217 ~~~~~~ 222 (233)
.++..+
T Consensus 313 ~l~~~~ 318 (1452)
T PTZ00297 313 TLPLNP 318 (1452)
T ss_pred EeCCCh
Confidence 985543
No 13
>KOG3873 consensus Sphingomyelinase family protein [Signal transduction mechanisms]
Probab=99.45 E-value=3.8e-13 Score=114.13 Aligned_cols=182 Identities=18% Similarity=0.179 Sum_probs=95.7
Q ss_pred EEEEEeecccCeeeec-cCCCC-----CCCC-CCCCEEEE---EEC--CEEEEEEEec--CCCCCCccchHHHHHHHHHH
Q 026782 5 ICLFYVCLCNNSSVFH-FLLSA-----LKYE-PDGRVILA---EFE--TFYLLNTYAP--NNGWKEEENSFQRRRKWDKR 70 (233)
Q Consensus 5 ~~~i~sr~~~~~~~~~-~~~~~-----~~~d-~~gR~i~~---~~~--~~~l~nvy~P--~~~~~~~~~~~~~r~~~~~~ 70 (233)
|++++||+|+.+..+. ++-+. --.| -.|..|.+ .++ .+.++|+|+. .+...+ .-...|....=.
T Consensus 81 GL~vfSK~PI~~t~~~~y~lNG~p~~i~rGDWf~GK~Vgl~~l~~~g~~v~~yntHLHAeY~rq~D--~YL~HR~~QAwd 158 (422)
T KOG3873|consen 81 GLCVFSKHPILETLFHRYSLNGYPHAIHRGDWFGGKGVGLTVLLVGGRMVNLYNTHLHAEYDRQND--EYLCHRVAQAWD 158 (422)
T ss_pred ceEEeecCchhhhhhhccccCCccceeeeccccccceeEEEEEeeCCEEeeeeehhccccccccCc--hhhhHHHHHHHH
Confidence 8999999999876543 44221 0111 13333322 233 3555565553 333321 222334333333
Q ss_pred HHHHHHhc--CCCCEEEEcCCCccCCCCcCCChhhhhhhhcCCCCCCCCCCCCCCCCCHHHHHHHHHHHhcCCeeEeeec
Q 026782 71 IQEFVLQC--SGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRF 148 (233)
Q Consensus 71 l~~~l~~~--~~~~vIi~GDFN~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~er~~~~~l~~~~~l~D~~r~ 148 (233)
+..+|+.. .+.-||++||||.-|.++-. +++.+.+|+|+|+.
T Consensus 159 laqfi~~t~q~~~vVI~~GDLN~~P~dl~~------------------------------------~ll~~a~l~daw~~ 202 (422)
T KOG3873|consen 159 LAQFIRATRQNADVVILAGDLNMQPQDLGH------------------------------------KLLLSAGLVDAWTS 202 (422)
T ss_pred HHHHHHHHhcCCcEEEEecCCCCCccccce------------------------------------eeeeccchhhhHhh
Confidence 55556542 56789999999998875421 11222236677776
Q ss_pred cCCCCC----C---------CC------ceeccCCCCCCcCCCcceeeEEEeChhhhh-ceeeEEEecCCcCCCCCCCCC
Q 026782 149 LHKEKD----M---------DC------GFSWSGNPIGKYRGKRMRIDYFIVSEELKD-RIIACEMQGHGIELEGFYGSD 208 (233)
Q Consensus 149 ~~p~~~----~---------~~------~~T~~~~~~~~~~~~~~RID~i~vs~~l~~-~v~~~~i~~~~~~~~~~~~SD 208 (233)
.|+... . +. .-||.+.........+.||||+|+++.... ...++++......-.+-..||
T Consensus 203 ~h~~q~e~~~~r~s~~~~l~~g~tcd~~~N~y~~aqk~~ddp~~~RiDYvl~k~~~~~~~~a~~~~t~~rvP~~d~s~SD 282 (422)
T KOG3873|consen 203 LHLDQCESDSFRLSEDKELVEGNTCDSPLNCYTSAQKREDDPLGKRIDYVLVKPGDCNAKIAEVEFTEPRVPGEDCSYSD 282 (422)
T ss_pred hchhhhcCcccccchhhhhhcCCcccCcchhhhHHHhCCCCccceeeeEEEEcCcceEEEeeeEEecCCCCCCCCCCccc
Confidence 665321 0 00 012322111111124789999999987642 233444432111112357899
Q ss_pred cCceEEEEeccCCCch
Q 026782 209 HCPVSLELSEASSDSE 224 (233)
Q Consensus 209 H~PV~~~l~~~~~~~~ 224 (233)
|..++++|.+...|+.
T Consensus 283 H~Al~a~L~I~~~~~~ 298 (422)
T KOG3873|consen 283 HEALMATLKIFKQPPR 298 (422)
T ss_pred hhhheeEEEeecCCCC
Confidence 9999999998665543
No 14
>COG3021 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.25 E-value=6.9e-11 Score=99.67 Aligned_cols=156 Identities=15% Similarity=-0.004 Sum_probs=86.6
Q ss_pred cceEEEEEeecccCeeeeccCCCCCCCCCCCCEEEEEE----CCEEEEEEEecCCCCCCccchHHHHHHHHHHHHHHHHh
Q 026782 2 SLFICLFYVCLCNNSSVFHFLLSALKYEPDGRVILAEF----ETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQ 77 (233)
Q Consensus 2 ~~~~~~i~sr~~~~~~~~~~~~~~~~~d~~gR~i~~~~----~~~~l~nvy~P~~~~~~~~~~~~~r~~~~~~l~~~l~~ 77 (233)
.+|+++++||.+.......-+ -...+.++.+.+.. ..+.++++|..+..... -++| +.+..|.+.+..
T Consensus 149 ~~~~~a~~sr~~~~~~~~~e~---~~~~pk~~~~t~~~~~~g~~l~v~~lh~~~~~~~~----~~~~-~ql~~l~~~i~~ 220 (309)
T COG3021 149 GVFTLAILSRRPCCPLTEAEP---WLRLPKSALATAYPLPDGTELTVVALHAVNFPVGT----DPQR-AQLLELGDQIAG 220 (309)
T ss_pred CeeeeeeccccccccccccCc---cccCCccceeEEEEcCCCCEEEEEeeccccccCCc----cHHH-HHHHHHHHHHHc
Confidence 468999999987421111111 11225677666654 26999999987544321 1234 445556666654
Q ss_pred cCCCCEEEEcCCCccCCCCcCCChhhhhhhhcCCCCCCCCCCCCCCCCCHHHHHHHHHHHhcCCeeEeeeccCCCCCCCC
Q 026782 78 CSGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDC 157 (233)
Q Consensus 78 ~~~~~vIi~GDFN~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~er~~~~~l~~~~~l~D~~r~~~p~~~~~~ 157 (233)
...++|++||||+++... ..+++-..+ ..+.+.... .. .
T Consensus 221 -~~gpvIlaGDfNa~pWS~-----------------------------------~~~R~~~l~-~~~~~~~aG-~~---~ 259 (309)
T COG3021 221 -HSGPVILAGDFNAPPWSR-----------------------------------TAKRMAALG-GLRAAPRAG-LW---E 259 (309)
T ss_pred -CCCCeEEeecCCCcchhH-----------------------------------HHHHHHHhc-ccccchhcc-CC---c
Confidence 357999999999976320 001111111 122222111 11 1
Q ss_pred ceeccCCCCCCcCCCcceeeEEEeChhhhhceeeEEEecCCcCCCCCCCCCcCceEEEEecc
Q 026782 158 GFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELSEA 219 (233)
Q Consensus 158 ~~T~~~~~~~~~~~~~~RID~i~vs~~l~~~v~~~~i~~~~~~~~~~~~SDH~PV~~~l~~~ 219 (233)
.-|++.... + -.+.+|||||++. + .+.++..+. ..+|||.||+++|...
T Consensus 260 ~~~~p~~~~-r--~~g~PIDhvf~rg-l--~~~ka~rl~-------~~gSDH~PLLveF~~~ 308 (309)
T COG3021 260 VRFTPDERR-R--AFGLPIDHVFYRG-L--TVMKARRLP-------DRGSDHRPLLVEFSYG 308 (309)
T ss_pred cccCHHHHh-h--ccCCCcceeeecC-c--chhhhhhcc-------ccCCCCCceEEEEEec
Confidence 122332211 1 1357899999988 3 345555554 3789999999999753
No 15
>PF03372 Exo_endo_phos: Endonuclease/Exonuclease/phosphatase family Subset of Pfam family Subset of Pfam family; InterPro: IPR005135 This domain is found in a large number of proteins including magnesium dependent endonucleases and phosphatases involved in intracellular signalling []. Proteins this domain is found in include: AP endonuclease proteins (4.2.99.18 from EC), DNase I proteins (3.1.21.1 from EC), Synaptojanin an inositol-1,4,5-trisphosphate phosphatase (3.1.3.56 from EC) and Sphingomyelinase (3.1.4.12 from EC).; PDB: 2J63_A 2JC4_A 3TEB_B 3MTC_A 3N9V_B 1ZWX_A 2F1N_A 1Y21_A 1NTF_A 2IMQ_X ....
Probab=99.23 E-value=2.1e-11 Score=99.42 Aligned_cols=85 Identities=19% Similarity=0.171 Sum_probs=43.1
Q ss_pred eEEEEEeecccCeeeeccCCCCCCCCCCCCEEEE-----------E--ECCEEEEEEEecCCCCCCccchHHHHHHHHHH
Q 026782 4 FICLFYVCLCNNSSVFHFLLSALKYEPDGRVILA-----------E--FETFYLLNTYAPNNGWKEEENSFQRRRKWDKR 70 (233)
Q Consensus 4 ~~~~i~sr~~~~~~~~~~~~~~~~~d~~gR~i~~-----------~--~~~~~l~nvy~P~~~~~~~~~~~~~r~~~~~~ 70 (233)
.|++|++|.|+......... ..+..+..+.. . ...|.|+|+|+|+.... +.....+++..
T Consensus 74 ~g~~i~~r~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~v~~~H~~~~~~~----~~~~~~~~~~~ 146 (249)
T PF03372_consen 74 YGVAILSRSPIFSSVSYVFS---LFSKPGIRIFRRSSKSKGIVPVSINGKPITVVNVHLPSSNDE----RQEQWRELLAR 146 (249)
T ss_dssp EEEEEEESSCCCEEEEEEEE---EESSSTTCEEEEEEEEEEEEEEEEETEEEEEEEEETTSHHHH----HHHHHHHHHHH
T ss_pred ceEEEEEccccccccccccc---cccccccccccccccccccccccccceEEEeeeccccccchh----hhhhhhhhhhh
Confidence 58999999997654433210 01112221111 1 12688999999885421 11001133333
Q ss_pred HHHHHHhcCCCCEEEEcCCCccCCC
Q 026782 71 IQEFVLQCSGKPLIWCGDLNVSHEE 95 (233)
Q Consensus 71 l~~~l~~~~~~~vIi~GDFN~~~~~ 95 (233)
+..........++|||||||+.+..
T Consensus 147 ~~~~~~~~~~~~~iv~GDfN~~~~~ 171 (249)
T PF03372_consen 147 IQKIYADNPNEPVIVMGDFNSRPDS 171 (249)
T ss_dssp HHHHHHTSSCCEEEEEEE-SS-BSS
T ss_pred hhhcccccccceEEEEeecccCCcc
Confidence 3333322222369999999998764
No 16
>PLN03144 Carbon catabolite repressor protein 4 homolog; Provisional
Probab=98.84 E-value=2.9e-08 Score=91.78 Aligned_cols=49 Identities=16% Similarity=0.157 Sum_probs=31.4
Q ss_pred EEEEEEEecCCCCCCccchHHHHHHHHHHHHHHHHhc---CCCCEEEEcCCCccCCC
Q 026782 42 FYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC---SGKPLIWCGDLNVSHEE 95 (233)
Q Consensus 42 ~~l~nvy~P~~~~~~~~~~~~~r~~~~~~l~~~l~~~---~~~~vIi~GDFN~~~~~ 95 (233)
|.|+|+|+-.... .. ..|......|.+.|+.. .+.|+|+|||||+.+.+
T Consensus 419 l~VaNTHL~~~p~-~~----dvRl~Q~~~Ll~~l~~~~~~~~~PvIlcGDFNS~P~S 470 (606)
T PLN03144 419 LCVANTHIHANQE-LK----DVKLWQVHTLLKGLEKIAASADIPMLVCGDFNSVPGS 470 (606)
T ss_pred EEEEEeeeccCCc-cc----hhHHHHHHHHHHHHHHHhhcCCCceEEeccCCCCCCC
Confidence 8899999933221 11 12444445555555542 46799999999998864
No 17
>KOG2756 consensus Predicted Mg2+-dependent phosphodiesterase TTRAP [Signal transduction mechanisms]
Probab=98.49 E-value=2.4e-07 Score=76.41 Aligned_cols=162 Identities=19% Similarity=0.308 Sum_probs=90.0
Q ss_pred EEeecccCeee-eccCCCCCCCCCCCC-EEEEEE--C--CEEEEEEEecCCCCCCccchHHHHHHHHHHHHHHHHhcCCC
Q 026782 8 FYVCLCNNSSV-FHFLLSALKYEPDGR-VILAEF--E--TFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGK 81 (233)
Q Consensus 8 i~sr~~~~~~~-~~~~~~~~~~d~~gR-~i~~~~--~--~~~l~nvy~P~~~~~~~~~~~~~r~~~~~~l~~~l~~~~~~ 81 (233)
++||+..++.. ..|+.+ .=+| ..++++ . .+.+.+.|+-+..... +++.+.=..-++.+.+.|+..++.
T Consensus 171 ~~s~~~Vks~~~i~F~NS-----~M~R~L~I~Ev~v~G~Kl~l~tsHLEStr~h~-P~r~~qF~~~~~k~~EaIe~lPnA 244 (349)
T KOG2756|consen 171 KKSRVKVKSQEIIPFPNS-----KMMRNLLIVEVNVSGNKLCLMTSHLESTRGHA-PERMNQFKMVLKKMQEAIESLPNA 244 (349)
T ss_pred ehhhcCccccceeccCcc-----hhhheeEEEEEeecCceEEEEeccccCCCCCC-hHHHHHHHHHHHHHHHHHHhCCCc
Confidence 34677776543 345532 2455 334444 3 6899999996655432 122211112234556667666888
Q ss_pred CEEEEcCCCccCCCCcCCChhhhhhhhcCCCCCCCCCCCCCCCCCHHHHHHHHHHHhcCCeeEeeeccC-CCCCCCCcee
Q 026782 82 PLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLH-KEKDMDCGFS 160 (233)
Q Consensus 82 ~vIi~GDFN~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~er~~~~~l~~~~~l~D~~r~~~-p~~~~~~~~T 160 (233)
.||.+||.|..-...-++ + +.++ ++|+|..+. |.. ..||
T Consensus 245 ~ViFGGD~NlrD~ev~r~------------------------~------------lPD~-~vDvWE~lg~p~~---~~FT 284 (349)
T KOG2756|consen 245 TVIFGGDTNLRDREVTRC------------------------G------------LPDN-IVDVWEFLGKPKH---CQFT 284 (349)
T ss_pred eEEEcCcccchhhhcccC------------------------C------------CCch-HHHHHHHhCCCCc---Ccee
Confidence 999999999853321111 0 1233 899998776 554 5799
Q ss_pred ccCCCCCC---cCCCcceeeEEEe-----ChhhhhceeeEEEecCC-cCCCCCCCCCcCceEEEEe
Q 026782 161 WSGNPIGK---YRGKRMRIDYFIV-----SEELKDRIIACEMQGHG-IELEGFYGSDHCPVSLELS 217 (233)
Q Consensus 161 ~~~~~~~~---~~~~~~RID~i~v-----s~~l~~~v~~~~i~~~~-~~~~~~~~SDH~PV~~~l~ 217 (233)
|....+.. ......|+|+||+ +..+... ...+.... ..-=...+|||..+.++|.
T Consensus 285 wDT~~N~nl~G~~a~k~RfDRi~~r~~~~~G~~~~~--~l~l~g~~kiRgc~~fPSDHwgll~Tl~ 348 (349)
T KOG2756|consen 285 WDTQMNSNLGGTAACKLRFDRIFFRAAAEEGHIIPR--SLDLLGLEKLRGCGRFPSDHWGLLCTLD 348 (349)
T ss_pred eecccCcccchhHHHHHHHHHHhhhhhhhcCCcCcc--ccchhhhhhhccCCCCCcccceeeeecc
Confidence 97654321 1223479999998 3333211 11111000 0000257899999999875
No 18
>smart00476 DNaseIc deoxyribonuclease I. Deoxyribonuclease I catalyzes the endonucleolytic cleavage of double-stranded DNA. The enzyme is secreted outside the cell and also involved in apoptosis in the nucleus.
Probab=98.32 E-value=2.1e-06 Score=72.64 Aligned_cols=48 Identities=10% Similarity=0.115 Sum_probs=30.2
Q ss_pred CEEEEEEEecCCCCCCccchHHHHHHHHHHHHHHHHhcCCCCEEEEcCCCccCC
Q 026782 41 TFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGKPLIWCGDLNVSHE 94 (233)
Q Consensus 41 ~~~l~nvy~P~~~~~~~~~~~~~r~~~~~~l~~~l~~~~~~~vIi~GDFN~~~~ 94 (233)
.|+++|+|+.+.+.. +.-...++.+.+..++....++|+|||||+...
T Consensus 143 ~F~li~~H~~p~~~~------~e~~aL~~v~~~~~~~~~~~~villGDFNa~~~ 190 (276)
T smart00476 143 EFVIVPLHTTPEAAV------AEIDALYDVYLDVRQKWGTEDVIFMGDFNAGCS 190 (276)
T ss_pred cEEEEEecCChHHHH------HHHHHHHHHHHHHHHhhccCCEEEEccCCCCCC
Confidence 699999999765421 101112333444444446789999999999643
No 19
>smart00128 IPPc Inositol polyphosphate phosphatase, catalytic domain homologues. Mg(2+)-dependent/Li(+)-sensitive enzymes.
Probab=98.21 E-value=1.6e-05 Score=68.59 Aligned_cols=62 Identities=16% Similarity=0.241 Sum_probs=41.4
Q ss_pred CCCCCCEEEEEEC--CEEEEEEEecCCCCCCccchHHHHHHHHHHHHHHHHh--------cCCCCEEEEcCCCccCC
Q 026782 28 YEPDGRVILAEFE--TFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQ--------CSGKPLIWCGDLNVSHE 94 (233)
Q Consensus 28 ~d~~gR~i~~~~~--~~~l~nvy~P~~~~~~~~~~~~~r~~~~~~l~~~l~~--------~~~~~vIi~GDFN~~~~ 94 (233)
.+..|.++.+++. .+.++|+|++++... .+.|.+-+..+.+.+.. .....+|++||||--.+
T Consensus 124 ~nKG~v~i~~~~~~~~~~fv~~HL~a~~~~-----~~~R~~~~~~I~~~~~f~~~~~~~~~~~d~~f~~GDlNyRi~ 195 (310)
T smart00128 124 GNKGAVAVRFKLSDTSFCFVNSHLAAGASN-----VEQRNQDYKTILRALSFPERAELSQFDHDVVFWFGDLNFRLD 195 (310)
T ss_pred ecCceEEEEEEEcCcEEEEEeeccccccch-----hhhhHHHHHHHHHhcCCCCCccccccccceEEEecCcceeec
Confidence 3456667777777 499999999997642 33455555555444321 12468999999998544
No 20
>COG2374 Predicted extracellular nuclease [General function prediction only]
Probab=97.82 E-value=5.3e-05 Score=70.69 Aligned_cols=137 Identities=21% Similarity=0.253 Sum_probs=83.1
Q ss_pred CEEEEEEEecCCCCCC---------ccchHHHHHHHHHHHHHHHHhc----CCCCEEEEcCCCccCCCCcCCChhhhhhh
Q 026782 41 TFYLLNTYAPNNGWKE---------EENSFQRRRKWDKRIQEFVLQC----SGKPLIWCGDLNVSHEEIDVSHPEFFAAA 107 (233)
Q Consensus 41 ~~~l~nvy~P~~~~~~---------~~~~~~~r~~~~~~l~~~l~~~----~~~~vIi~GDFN~~~~~~D~~~~~~~~~~ 107 (233)
.|+++.=|+.+.+... .......|.+..++|..+++.. .+.+++|+||||.-..+ ++
T Consensus 622 kfvvVvNHfkSKgs~~p~~gd~~dgQg~~~~~R~~~AqaL~~~la~~~~~~~d~~~viLGD~N~y~~e----dp------ 691 (798)
T COG2374 622 KFVVVVNHFKSKGSDCPVDGDTQDGQGNSNQTRVRAAQALAAFLATNPTGKADADIVILGDFNDYAFE----DP------ 691 (798)
T ss_pred EEEEEEeeecccCCCCCCcccccccccchhhHHHHHHHHHHHHHhhCcccccCCCEEEEeccchhhhc----cH------
Confidence 5777777887654321 0012234677778899999852 46799999999984321 11
Q ss_pred hcCCCCCCCCCCCCCCCCCHHHHHHHHHHHhcCCeeEeeeccCCCCCCCCceeccCCCCCCcCCCcceeeEEEeChhhhh
Q 026782 108 KLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKD 187 (233)
Q Consensus 108 ~~~~~~~~~~~~~~~~~~~~~er~~~~~l~~~~~l~D~~r~~~p~~~~~~~~T~~~~~~~~~~~~~~RID~i~vs~~l~~ 187 (233)
++.+-..| +...--.+++.. ..|||.-. ...--+||+|+|.++..
T Consensus 692 -------------------------I~~l~~aG-y~~l~~~~~~~~---~~YSY~f~------G~~gtLDhaLas~sl~~ 736 (798)
T COG2374 692 -------------------------IQALEGAG-YMNLAARFHDAG---DRYSYVFN------GQSGTLDHALASASLAA 736 (798)
T ss_pred -------------------------HHHHhhcC-chhhhhhccCCC---CceEEEEC------CccchHhhhhhhhhhhh
Confidence 22222223 333322334333 24776432 11246999999999998
Q ss_pred ceeeEEEecCC-cC---------C-----------CCCCCCCcCceEEEEeccCCC
Q 026782 188 RIIACEMQGHG-IE---------L-----------EGFYGSDHCPVSLELSEASSD 222 (233)
Q Consensus 188 ~v~~~~i~~~~-~~---------~-----------~~~~~SDH~PV~~~l~~~~~~ 222 (233)
++..+..++-. .+ + .....|||-||++.|++....
T Consensus 737 ~v~~a~ewHINAdE~~~ldYn~~Fk~q~~~~~~~~~~fR~SDHDPvvvglnL~~~a 792 (798)
T COG2374 737 QVSGATEWHINADEPDALDYNLEFKGQNVSLYKTTNPFRASDHDPVVVGLNLLGTA 792 (798)
T ss_pred hccCceeeeecccccchhhhhhhhccccccccccCCccccCCCCCeEEEEEecccc
Confidence 88877766411 00 0 123679999999999986543
No 21
>KOG0566 consensus Inositol-1,4,5-triphosphate 5-phosphatase (synaptojanin), INP51/INP52/INP53 family [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.39 E-value=0.0012 Score=63.24 Aligned_cols=66 Identities=17% Similarity=0.181 Sum_probs=39.8
Q ss_pred eeccCCCCCCCCCCCCEEEEEEC----CEEEEEEEecCCCCCCccchHHHHHHHHHHHHHHHHh-----c-CCCCEEEEc
Q 026782 18 VFHFLLSALKYEPDGRVILAEFE----TFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQ-----C-SGKPLIWCG 87 (233)
Q Consensus 18 ~~~~~~~~~~~d~~gR~i~~~~~----~~~l~nvy~P~~~~~~~~~~~~~r~~~~~~l~~~l~~-----~-~~~~vIi~G 87 (233)
..||++.. ..-..|.+++. .|-+++.|+-.+... .+.|..=+..+.+-|.- . ....|++||
T Consensus 651 KTGfGG~t----gNKGAVAIrf~~~~TsfCFv~SHlAAG~sn-----v~ERn~DY~tI~r~l~Fp~Gr~I~~HD~ifW~G 721 (1080)
T KOG0566|consen 651 KTGFGGAT----GNKGAVAIRFVYHATSFCFVCSHLAAGQSN-----VEERNEDYKTIARKLRFPRGRMIFSHDYIFWLG 721 (1080)
T ss_pred eccccccc----CCCceEEEEEEeccccEEEEecccccccch-----HhhhhhhHHHHHHhccccCCccccCCceEEEec
Confidence 34676532 23446666664 788999999776643 22243334455444431 1 346799999
Q ss_pred CCCcc
Q 026782 88 DLNVS 92 (233)
Q Consensus 88 DFN~~ 92 (233)
|||--
T Consensus 722 DFNYR 726 (1080)
T KOG0566|consen 722 DFNYR 726 (1080)
T ss_pred cccee
Confidence 99973
No 22
>PLN03191 Type I inositol-1,4,5-trisphosphate 5-phosphatase 2; Provisional
Probab=97.11 E-value=0.0082 Score=55.59 Aligned_cols=40 Identities=20% Similarity=0.017 Sum_probs=24.5
Q ss_pred cceeeEEEeChhhhhceeeEEEecCCcCCCCCCCCCcCceEEEEeccC
Q 026782 173 RMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELSEAS 220 (233)
Q Consensus 173 ~~RID~i~vs~~l~~~v~~~~i~~~~~~~~~~~~SDH~PV~~~l~~~~ 220 (233)
.+--|+||....- +....+... ....|||.||.+.|.+..
T Consensus 554 PSWCDRILykg~~---i~~l~Y~s~-----ei~~SDHRPV~A~F~v~V 593 (621)
T PLN03191 554 PAWCDRILWLGKG---IKQLCYKRS-----EIRLSDHRPVSSMFLVEV 593 (621)
T ss_pred cchhheEeecCCC---ceEeEeccC-----CcccCCchhcceEEEEEE
Confidence 3567999985432 111112111 257899999999887654
No 23
>KOG1294 consensus Apurinic/apyrimidinic endonuclease and related enzymes [Replication, recombination and repair]
Probab=96.79 E-value=0.0066 Score=52.77 Aligned_cols=153 Identities=24% Similarity=0.326 Sum_probs=84.8
Q ss_pred CCCCCCCEEEEEECCEEEEEEEecCCCCCCccchHHHHHHHHHHHHHHHHhc--CCCCEEEEcCCCccCCCCcCCChhhh
Q 026782 27 KYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC--SGKPLIWCGDLNVSHEEIDVSHPEFF 104 (233)
Q Consensus 27 ~~d~~gR~i~~~~~~~~l~nvy~P~~~~~~~~~~~~~r~~~~~~l~~~l~~~--~~~~vIi~GDFN~~~~~~D~~~~~~~ 104 (233)
..|.+||++.+++..+.+++||.|....+.. +.+..|+..+....+.. .+.++++ |+.+..+|.... +
T Consensus 8 ~~~~~~~~~~~~k~~~~~~~v~~~~~~~e~~----~~~~~~~~~l~~r~~~~~~~g~~~~~----~i~~~~i~~~~~--~ 77 (335)
T KOG1294|consen 8 ELDSEGRCVIVDKEMFVLINVYCPRNSPEIS----KRRLRFAKVLHYRVEKLLKQGNRKVL----NICPWDIAGLEA--C 77 (335)
T ss_pred hhhccCCeeeeecccccccceeccccCCcch----hhhhhhhhHHHHHHHHHHHhCCeeEe----ecCchhhhhhhh--h
Confidence 4678999999999999999999999886431 12566776666555542 4667776 777655443321 1
Q ss_pred hhhhcCCCCCCCCCCCCCCCCCHHHHHHHHHHHhcCCeeEeeeccCCCCCCCCceeccCC-CCCCcCCCcceeeEEEeCh
Q 026782 105 AAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGN-PIGKYRGKRMRIDYFIVSE 183 (233)
Q Consensus 105 ~~~~~~~~~~~~~~~~~~~~~~~~er~~~~~l~~~~~l~D~~r~~~p~~~~~~~~T~~~~-~~~~~~~~~~RID~i~vs~ 183 (233)
. +.. +...... +-..+..+....-.+|..+..+|.. ..||.+.. .+....+.+.++||+.+.+
T Consensus 78 ~--~~~----------~~~~~~~-~l~d~~~~~~t~~~i~~~~~~~~~~---~~~~~~~~~~~~~~~~y~~~~~~~~~~p 141 (335)
T KOG1294|consen 78 E--KFS----------GDPEISS-ELRDLQCLLETKCTIDSGPCSHPTE---KGYTHSLLSCASKKDGYSGEIDYSKFKP 141 (335)
T ss_pred h--ccc----------cchhccc-cchhhhhhhhccceeccCcceeccc---CCcccceeecccccCCccceeeeeeccc
Confidence 0 000 0000001 1112223333332477777777775 35642211 1112235578899988755
Q ss_pred hhhhceeeEEEecCCcCCCCCCCCCcCceEEEEe
Q 026782 184 ELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 217 (233)
Q Consensus 184 ~l~~~v~~~~i~~~~~~~~~~~~SDH~PV~~~l~ 217 (233)
... -..+. ...|||+|+-..+.
T Consensus 142 ~~v----~~~~~--------~~~s~h~~~g~~i~ 163 (335)
T KOG1294|consen 142 LKV----HYGFG--------AMGSDHRPVGRVII 163 (335)
T ss_pred cee----eeccc--------ccCCccCccceEEE
Confidence 331 11111 13799999876543
No 24
>COG5411 Phosphatidylinositol 5-phosphate phosphatase [Signal transduction mechanisms]
Probab=96.50 E-value=0.013 Score=51.93 Aligned_cols=47 Identities=19% Similarity=0.271 Sum_probs=29.0
Q ss_pred CEEEEEEEecCCCCCCccchHHHHHHHHHHHHHHHHh------cCCCCEEEEcCCCcc
Q 026782 41 TFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQ------CSGKPLIWCGDLNVS 92 (233)
Q Consensus 41 ~~~l~nvy~P~~~~~~~~~~~~~r~~~~~~l~~~l~~------~~~~~vIi~GDFN~~ 92 (233)
.+-++|.|+-.+... ++.|..-++.+..-|.. .....++++||||.-
T Consensus 166 ~~cFv~shlaag~~N-----~eeR~~Dy~~I~~~i~f~~g~~I~~hdti~w~GDlNyR 218 (460)
T COG5411 166 SFCFVNSHLAAGVNN-----IEERIFDYRSIASNICFSRGLRIYDHDTIFWLGDLNYR 218 (460)
T ss_pred CcEEEecchhccccc-----HHHHHHHHHHHHHheecCCCceecccceEEEecccCce
Confidence 788899998665532 23344444445444432 134579999999963
No 25
>KOG0620 consensus Glucose-repressible alcohol dehydrogenase transcriptional effector CCR4 and related proteins [Transcription]
Probab=96.33 E-value=0.0048 Score=54.31 Aligned_cols=46 Identities=20% Similarity=0.135 Sum_probs=27.9
Q ss_pred ceeeEEEeChhhhhceeeEEEec---------CCcCCCCCCCCCcCceEEEEeccCC
Q 026782 174 MRIDYFIVSEELKDRIIACEMQG---------HGIELEGFYGSDHCPVSLELSEASS 221 (233)
Q Consensus 174 ~RID~i~vs~~l~~~v~~~~i~~---------~~~~~~~~~~SDH~PV~~~l~~~~~ 221 (233)
..|||||.+++-.. ..+-+.. ....-....+|||.|+.++|++...
T Consensus 300 g~~DYIfys~~~~~--~~~~L~~~~e~~~~~~~~~lPs~~~pSDHi~L~~ef~~~~~ 354 (361)
T KOG0620|consen 300 GTLDYIFYSKAALI--VESALELLDEDELVIKVTGLPSPHHPSDHIPLLAEFEIAPP 354 (361)
T ss_pred ceeeEEEEcccccc--ccccccCCChhhhhcccccCCCCCCCCccchhhccccccCc
Confidence 57999999995331 1111110 0000124689999999999987653
No 26
>KOG2338 consensus Transcriptional effector CCR4-related protein [Transcription]
Probab=95.58 E-value=0.038 Score=49.87 Aligned_cols=63 Identities=24% Similarity=0.233 Sum_probs=39.3
Q ss_pred CCCCCCEEEEEEC-------CEEEEEEEecCCCCCCccchHHHHHHHHHHHHHHHHh----c-CCCCEEEEcCCCccCCC
Q 026782 28 YEPDGRVILAEFE-------TFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQ----C-SGKPLIWCGDLNVSHEE 95 (233)
Q Consensus 28 ~d~~gR~i~~~~~-------~~~l~nvy~P~~~~~~~~~~~~~r~~~~~~l~~~l~~----~-~~~~vIi~GDFN~~~~~ 95 (233)
.|.-|-+|.+++. .+.|.|+|+-...... . .|+.....|.+.++. . ..-|+++|||||+.+.+
T Consensus 233 ~~NV~lvv~l~f~~~~~~sq~ilVanTHLl~np~~~---~--vrL~Q~~iiL~~~~~~~~~~~~~~pi~l~GDfNt~p~~ 307 (495)
T KOG2338|consen 233 RDNVGLVVSLEFRLVDESSQGILVANTHLLFNPSRS---D--VRLAQVYIILAELEKMSKSSKSHWPIFLCGDFNTEPDS 307 (495)
T ss_pred ccceeEEEEEEecccCcccCceEEEeeeeeecCccc---c--hhhHHHHHHHHHHHHHHhhcccCCCeEEecCCCCCCCC
Confidence 4566777888872 6999999995443211 1 143333344444433 1 13499999999998864
No 27
>COG5239 CCR4 mRNA deadenylase, exonuclease subunit and related nucleases [RNA processing and modification]
Probab=94.35 E-value=0.16 Score=44.17 Aligned_cols=44 Identities=25% Similarity=0.336 Sum_probs=27.2
Q ss_pred ceeeEEEeChhhhhceee----------EEEecCCcCCCCCCCCCcCceEEEEeccC
Q 026782 174 MRIDYFIVSEELKDRIIA----------CEMQGHGIELEGFYGSDHCPVSLELSEAS 220 (233)
Q Consensus 174 ~RID~i~vs~~l~~~v~~----------~~i~~~~~~~~~~~~SDH~PV~~~l~~~~ 220 (233)
.-|||||+..++..+++. +.+. |. .....+|||-|+.+++....
T Consensus 314 G~iDYIfy~~~~~~~~~~~l~~ve~e~~~k~~--G~-pn~~~pSdhipl~~ef~~~~ 367 (378)
T COG5239 314 GVIDYIFYHGGLLTRQTGLLGVVEGEYASKVI--GL-PNMPFPSDHIPLLAEFASDH 367 (378)
T ss_pred ceeEEEEEecCcceeeeccccccccchhhhhc--cc-CCCCCccccccchhcccccc
Confidence 479999999883211110 1111 11 12358899999999987654
No 28
>PTZ00312 inositol-1,4,5-triphosphate 5-phosphatase; Provisional
Probab=89.59 E-value=1.9 Score=36.82 Aligned_cols=54 Identities=19% Similarity=0.108 Sum_probs=30.5
Q ss_pred CEEEEEEEecCCCCCCcc------chHHHHHHHHHHHHHHHHh--cCCCCEEEEcCCCccCC
Q 026782 41 TFYLLNTYAPNNGWKEEE------NSFQRRRKWDKRIQEFVLQ--CSGKPLIWCGDLNVSHE 94 (233)
Q Consensus 41 ~~~l~nvy~P~~~~~~~~------~~~~~r~~~~~~l~~~l~~--~~~~~vIi~GDFN~~~~ 94 (233)
.|-++|+|+-+..+.-+. .....|.+-+..+.+.+.. ....++++.||||.-..
T Consensus 81 ~fdfVNiHLFHDaSNl~A~~tSPSiYS~~RqrAL~~iL~r~~~~~~~~~~lF~fGDfNyRld 142 (356)
T PTZ00312 81 VVNVLNVHLYNDDDNRVAAASSPSLYTGQRQEALLEAIAECSAFISPSDPLFIFGDFNVRLD 142 (356)
T ss_pred EEEEEEeeccCCcchhhHHhcCCchhHHHHHHHHHHHHHHHhhccCCCCcEEEeccceeeec
Confidence 589999999876532110 0111233333333322322 24679999999998654
No 29
>KOG2338 consensus Transcriptional effector CCR4-related protein [Transcription]
Probab=68.88 E-value=3 Score=38.06 Aligned_cols=46 Identities=26% Similarity=0.307 Sum_probs=28.4
Q ss_pred cceeeEEEeChhhhhc---------eeeEEEe----------cCCcCCCCCCCCCcCceEEEEec
Q 026782 173 RMRIDYFIVSEELKDR---------IIACEMQ----------GHGIELEGFYGSDHCPVSLELSE 218 (233)
Q Consensus 173 ~~RID~i~vs~~l~~~---------v~~~~i~----------~~~~~~~~~~~SDH~PV~~~l~~ 218 (233)
+..+||||.++....+ ..++... ..++..++.++|||..++++|.+
T Consensus 429 ~g~~dyif~~~~~~~~~~~~~~~~~~ikl~~~l~ip~~~e~~k~~~p~~~~~~SDH~aL~~~~~~ 493 (495)
T KOG2338|consen 429 KGTLDYIFYSPGDCKQSNREFEEDEAIKLKGLLRIPSPQEMWKAGQPPNGRYGSDHIALVAQFSL 493 (495)
T ss_pred ccceeeEEeccCcccccchhhhcccceeEEEEecCCCHHHhhccCCCCCCCCcccceEeeEeeEe
Confidence 3579999999883211 1111111 12232345799999999999875
No 30
>KOG1976 consensus Inositol polyphosphate 5-phosphatase, type I [Lipid transport and metabolism]
Probab=64.36 E-value=9.8 Score=32.74 Aligned_cols=43 Identities=23% Similarity=0.188 Sum_probs=27.9
Q ss_pred ceeeEEEeChhhhhceeeEE-------EecCCcCCCCCCCCCcCceEEEEecc
Q 026782 174 MRIDYFIVSEELKDRIIACE-------MQGHGIELEGFYGSDHCPVSLELSEA 219 (233)
Q Consensus 174 ~RID~i~vs~~l~~~v~~~~-------i~~~~~~~~~~~~SDH~PV~~~l~~~ 219 (233)
..-|+|+.+++...-|...+ +..-+ +...--||-||.+.+++-
T Consensus 340 AWcDRILmn~~a~eLv~~~e~e~~~~~Y~~vg---~e~c~GdHKpVfl~~~i~ 389 (391)
T KOG1976|consen 340 AWCDRILMNDRANELVKHDEFEASGLYYGLVG---EEKCVGDHKPVFLHASIC 389 (391)
T ss_pred HhhhhhhcCccHHHHhhccccCcccceecccc---cccccCCCcceEEEEeec
Confidence 56899999998765444111 11111 235778999999988753
No 31
>PF08253 Leader_Erm: Erm Leader peptide ; InterPro: IPR013204 These short proteins are leader peptides (15-19 amino acids) of erm genes that code for resistance determinants in Staphylococcus aureus [].
Probab=45.17 E-value=25 Score=16.82 Aligned_cols=13 Identities=15% Similarity=0.278 Sum_probs=9.9
Q ss_pred CcceEEEEEeecc
Q 026782 1 MSLFICLFYVCLC 13 (233)
Q Consensus 1 ~~~~~~~i~sr~~ 13 (233)
|++|.+.++.+..
T Consensus 1 MG~fSiFVI~~vh 13 (19)
T PF08253_consen 1 MGMFSIFVINTVH 13 (19)
T ss_pred CceEEEEEEEeec
Confidence 7888888887743
No 32
>cd07391 MPP_PF1019 Pyrococcus furiosus PF1019 and related proteins, metallophosphatase domain. This family includes bacterial and archeal proteins homologous to PF1019, an uncharacterized Pyrococcus furiosus protein. The domain present in members of this family belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for pro
Probab=38.35 E-value=43 Score=25.86 Aligned_cols=25 Identities=24% Similarity=0.353 Sum_probs=17.7
Q ss_pred HHHHHHHHHHHhcCCCCEEEEcCCC
Q 026782 66 KWDKRIQEFVLQCSGKPLIWCGDLN 90 (233)
Q Consensus 66 ~~~~~l~~~l~~~~~~~vIi~GDFN 90 (233)
+.++.+.+.+...+...+|++||+=
T Consensus 28 ~~~~~l~~~~~~~~~d~lii~GDl~ 52 (172)
T cd07391 28 DTLERLDRLIEEYGPERLIILGDLK 52 (172)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCccc
Confidence 4456666666655667899999953
No 33
>KOG1387 consensus Glycosyltransferase [Cell wall/membrane/envelope biogenesis]
Probab=32.12 E-value=35 Score=30.23 Aligned_cols=47 Identities=28% Similarity=0.448 Sum_probs=27.2
Q ss_pred CEEEEEEEecCCCCCCccchHHHHHHHHHHHHHHHHhc-CCCCEEEEcCCCccCCC
Q 026782 41 TFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWCGDLNVSHEE 95 (233)
Q Consensus 41 ~~~l~nvy~P~~~~~~~~~~~~~r~~~~~~l~~~l~~~-~~~~vIi~GDFN~~~~~ 95 (233)
.+-++.=|+-.++.++ |-.| .++....++. ...-+|-.||||++++.
T Consensus 45 tvgfFHPYCNAGGGGE-------rVLW-~Avr~~q~k~~n~~~viYsGD~n~t~~~ 92 (465)
T KOG1387|consen 45 TVGFFHPYCNAGGGGE-------RVLW-KAVRITQRKFPNNVIVIYSGDFNVTPEN 92 (465)
T ss_pred EEEEecccccCCCCcc-------eehh-HHHHHHHHhCCCceEEEEeCCCCCCHHH
Confidence 3556666776666542 3333 3443333333 33468889999998764
No 34
>COG1407 Predicted ICC-like phosphoesterases [General function prediction only]
Probab=31.65 E-value=53 Score=27.24 Aligned_cols=27 Identities=30% Similarity=0.382 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHhcCCCCEEEEcCCCc
Q 026782 65 RKWDKRIQEFVLQCSGKPLIWCGDLNV 91 (233)
Q Consensus 65 ~~~~~~l~~~l~~~~~~~vIi~GDFN~ 91 (233)
.+..+.+.+.+.....+.+|+.||+=-
T Consensus 49 ~~~~~~l~~ii~~~~p~~lIilGD~KH 75 (235)
T COG1407 49 DRILKRLDRIIERYGPKRLIILGDLKH 75 (235)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCcccc
Confidence 344555666666567789999999764
No 35
>PHA02546 47 endonuclease subunit; Provisional
Probab=23.18 E-value=1e+02 Score=26.81 Aligned_cols=25 Identities=24% Similarity=0.163 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHhcCCCCEEEEcCC
Q 026782 65 RKWDKRIQEFVLQCSGKPLIWCGDL 89 (233)
Q Consensus 65 ~~~~~~l~~~l~~~~~~~vIi~GDF 89 (233)
..+++.+.+++.+..-.-+|++||+
T Consensus 25 ~~~l~~ii~~a~~~~vD~VliaGDl 49 (340)
T PHA02546 25 LKFIKQAIEYSKAHGITTWIQLGDT 49 (340)
T ss_pred HHHHHHHHHHHHHcCCCEEEECCcc
Confidence 3455666666655455789999995
No 36
>cd00840 MPP_Mre11_N Mre11 nuclease, N-terminal metallophosphatase domain. Mre11 (also known as SbcD in Escherichia coli) is a subunit of the MRX protein complex. This complex includes: Mre11, Rad50, and Xrs2/Nbs1, and plays a vital role in several nuclear processes including DNA double-strand break repair, telomere length maintenance, cell cycle checkpoint control, and meiotic recombination, in eukaryotes. During double-strand break repair, the MRX complex is required to hold the two ends of a broken chromosome together. In vitro studies show that Mre11 has 3'-5' exonuclease activity on dsDNA templates and endonuclease activity on dsDNA and ssDNA templates. In addition to the N-terminal phosphatase domain, the eukaryotic MRE11 members of this family have a C-terminal DNA binding domain (not included in this alignment model). MRE11-like proteins are found in prokaryotes and archaea was well as in eukaryotes. Mre11 belongs to the metallophosphatase (MPP) superfamily. MPPs are functi
Probab=22.70 E-value=1.2e+02 Score=23.99 Aligned_cols=26 Identities=19% Similarity=0.137 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHhcCCCCEEEEcCCCc
Q 026782 66 KWDKRIQEFVLQCSGKPLIWCGDLNV 91 (233)
Q Consensus 66 ~~~~~l~~~l~~~~~~~vIi~GDFN~ 91 (233)
..++.+.+.+.+....-+|++||+=.
T Consensus 28 ~~~~~~~~~~~~~~~d~i~~~GD~~~ 53 (223)
T cd00840 28 EAFEEIVELAIEEKVDFVLIAGDLFD 53 (223)
T ss_pred HHHHHHHHHHHhcCCCEEEECCcccC
Confidence 33444445544334456999999743
No 37
>TIGR00619 sbcd exonuclease SbcD. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=21.82 E-value=1.3e+02 Score=24.93 Aligned_cols=25 Identities=20% Similarity=0.308 Sum_probs=17.0
Q ss_pred HHHHHHHHHHHHhcCCCCEEEEcCC
Q 026782 65 RKWDKRIQEFVLQCSGKPLIWCGDL 89 (233)
Q Consensus 65 ~~~~~~l~~~l~~~~~~~vIi~GDF 89 (233)
..+++.+.+.+.+....-+|++||+
T Consensus 25 ~~~l~~l~~~~~~~~~D~lli~GDi 49 (253)
T TIGR00619 25 KAFLDDLLEFAKAEQIDALLVAGDV 49 (253)
T ss_pred HHHHHHHHHHHHHcCCCEEEECCcc
Confidence 3456666666655455679999994
No 38
>KOG1111 consensus N-acetylglucosaminyltransferase complex, subunit PIG-A/SPT14, required for phosphatidylinositol biosynthesis/Sulfolipid synthase [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Lipid transport and metabolism]
Probab=20.33 E-value=3.9e+02 Score=23.98 Aligned_cols=16 Identities=19% Similarity=0.167 Sum_probs=10.8
Q ss_pred HHHHhcCCCCEEEEcC
Q 026782 73 EFVLQCSGKPLIWCGD 88 (233)
Q Consensus 73 ~~l~~~~~~~vIi~GD 88 (233)
...+..++-.+|++||
T Consensus 219 ~vc~~~p~vrfii~GD 234 (426)
T KOG1111|consen 219 SVCDKHPEVRFIIIGD 234 (426)
T ss_pred HHHhcCCCeeEEEecC
Confidence 3333345678999998
No 39
>cd07386 MPP_DNA_pol_II_small_archeal_C archeal DNA polymerase II, small subunit, C-terminal metallophosphatase domain. The small subunit of the archeal DNA polymerase II contains a C-terminal metallophosphatase domain. This domain is thought to be functionally active because the active site residues required for phosphoesterase activity in other members of this superfamily are intact. The archeal replicative DNA polymerases are thought to possess intrinsic phosphatase activity that hydrolyzes the pyrophosphate released during nucleotide polymerization. This domain belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiestera
Probab=20.12 E-value=88 Score=25.62 Aligned_cols=24 Identities=25% Similarity=0.214 Sum_probs=15.2
Q ss_pred HHHHHHHHHhcCC-----CCEEEEcCCCc
Q 026782 68 DKRIQEFVLQCSG-----KPLIWCGDLNV 91 (233)
Q Consensus 68 ~~~l~~~l~~~~~-----~~vIi~GDFN~ 91 (233)
++.|.++|..... ..+|++||+=.
T Consensus 19 ~~~l~~~l~~~~~~~~~~d~lvi~GDl~d 47 (243)
T cd07386 19 FEKFVRWLNGEDDSASRVKYLIIAGDLVD 47 (243)
T ss_pred HHHHHHHHcCCcccccCccEEEEeCCccc
Confidence 3456666654322 57999999743
Done!