Query 026782
Match_columns 233
No_of_seqs 211 out of 1329
Neff 8.7
Searched_HMMs 29240
Date Mon Mar 25 22:02:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026782.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/026782hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3g91_A MTH0212, exodeoxyribonu 100.0 4.7E-34 1.6E-38 238.3 17.4 192 4-224 69-263 (265)
2 2j63_A AP-endonuclease; base e 100.0 4.5E-32 1.5E-36 243.5 21.2 190 4-218 221-466 (467)
3 2voa_A AF_EXO, XTHA, exodeoxyr 100.0 4.6E-30 1.6E-34 212.3 20.6 190 4-218 64-257 (257)
4 1hd7_A DNA-(apurinic or apyrim 100.0 3.2E-30 1.1E-34 221.1 15.6 187 4-218 129-318 (318)
5 2jc4_A Exodeoxyribonuclease II 100.0 2.1E-29 7.3E-34 207.8 19.3 191 4-218 63-256 (256)
6 2jc5_A Exodeoxyribonuclease; h 100.0 1.3E-29 4.6E-34 209.4 17.9 188 4-219 67-257 (259)
7 2o3h_A DNA-(apurinic or apyrim 100.0 2.1E-29 7.1E-34 211.9 18.8 187 4-218 96-285 (285)
8 1ako_A Exonuclease III; AP-end 100.0 5.2E-28 1.8E-32 200.7 16.2 198 4-217 63-267 (268)
9 1vyb_A ORF2 contains A reverse 99.9 1.1E-26 3.9E-31 189.2 14.7 162 4-217 72-238 (238)
10 2ei9_A Non-LTR retrotransposon 99.9 4E-23 1.4E-27 170.6 10.0 164 5-221 57-222 (240)
11 1wdu_A TRAS1 ORF2P; four-layer 99.9 5.1E-21 1.7E-25 157.5 15.5 161 4-219 81-244 (245)
12 3teb_A Endonuclease/exonucleas 99.9 4.4E-21 1.5E-25 158.7 14.4 167 4-218 93-266 (266)
13 4gew_A 5'-tyrosyl-DNA phosphod 99.8 4.2E-19 1.4E-23 154.8 13.8 163 4-217 185-361 (362)
14 3l1w_A Uncharacterized protein 99.8 6.5E-19 2.2E-23 145.4 13.6 165 4-220 72-253 (257)
15 4fva_A 5'-tyrosyl-DNA phosphod 99.8 1.9E-18 6.5E-23 141.3 14.1 163 4-217 79-255 (256)
16 3g6s_A Putative endonuclease/e 99.8 1.1E-18 3.6E-23 145.0 12.1 166 6-221 79-263 (267)
17 3mpr_A Putative endonuclease/e 99.8 6.7E-18 2.3E-22 142.9 12.7 166 6-219 84-290 (298)
18 4gz1_A Tyrosyl-DNA phosphodies 99.8 9.8E-18 3.3E-22 136.9 13.0 136 41-219 115-255 (256)
19 1zwx_A SMCL, sphingomyelinase- 99.7 5.9E-18 2E-22 142.8 11.4 91 4-94 101-201 (301)
20 4f1h_A Tyrosyl-DNA phosphodies 99.7 3.7E-17 1.3E-21 131.9 12.3 134 41-217 109-249 (250)
21 2ddr_A Sphingomyelin phosphodi 99.7 5.4E-17 1.8E-21 137.0 13.6 179 4-219 101-306 (306)
22 3i41_A Beta-hemolysin; beta to 99.7 8E-16 2.7E-20 131.5 14.2 89 5-94 121-220 (317)
23 2f1n_A CDT B, cytolethal diste 99.5 2.9E-13 9.9E-18 110.9 11.3 80 4-94 107-191 (262)
24 1sr4_B CDT B, cytolethal diste 99.4 2.8E-12 9.5E-17 106.0 14.4 78 4-92 96-181 (261)
25 4b8c_D Glucose-repressible alc 99.3 3E-13 1E-17 127.7 1.2 50 173-223 666-722 (727)
26 2a40_B Deoxyribonuclease-1; WA 99.0 1.1E-09 3.7E-14 90.4 10.4 44 174-217 209-260 (260)
27 2imq_X Salivary nitrophorin; f 99.0 2.1E-10 7.3E-15 96.4 4.5 56 34-94 117-177 (282)
28 1i9z_A Synaptojanin, phosphati 99.0 6.6E-09 2.2E-13 89.7 13.0 81 4-93 113-212 (347)
29 3ngq_A CCR4-NOT transcription 98.9 1.7E-08 5.8E-13 88.6 13.8 49 42-95 197-260 (398)
30 2xsw_A 72 kDa inositol polypho 98.4 1.2E-06 4E-11 75.8 10.8 49 41-94 144-210 (357)
31 4a9c_A Phosphatidylinositol-3, 97.8 0.00047 1.6E-08 58.4 13.6 44 173-220 270-313 (316)
32 3mtc_A Type II inositol-1,4,5- 97.6 0.00045 1.5E-08 58.4 10.1 49 41-94 136-196 (313)
33 2q8u_A Exonuclease, putative; 22.8 78 0.0027 25.9 4.0 25 64-88 46-70 (336)
34 1z0n_A 5'-AMP-activated protei 21.9 34 0.0012 22.9 1.3 11 81-91 22-32 (96)
35 2lyd_A Decapping protein 1; DC 21.2 1.4E+02 0.0049 21.3 4.6 63 4-76 70-132 (134)
No 1
>3g91_A MTH0212, exodeoxyribonuclease; double-strand specific 3'-5' exonuclease, AP endonuclease; HET: PG4; 1.23A {Methanothermobacter thermautotrophicusorganism_taxid} PDB: 3fzi_A 3g0a_A 3g1k_A 3g2c_A 3g3c_A* 3g3y_A* 3g4t_A* 3g00_A 3g0r_A* 3g2d_A* 3g38_A 3g8v_A* 3ga6_A
Probab=100.00 E-value=4.7e-34 Score=238.27 Aligned_cols=192 Identities=28% Similarity=0.522 Sum_probs=158.2
Q ss_pred eEEEEEeecccCeeeeccCCCCCCCCCCCCEEEEEECCEEEEEEEecCCCCCCccchHHHHHHHHHHHHHHHHhc--CCC
Q 026782 4 FICLFYVCLCNNSSVFHFLLSALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC--SGK 81 (233)
Q Consensus 4 ~~~~i~sr~~~~~~~~~~~~~~~~~d~~gR~i~~~~~~~~l~nvy~P~~~~~~~~~~~~~r~~~~~~l~~~l~~~--~~~ 81 (233)
-||||+||.|+..+..+++. ...|.+||++.++++.+.|+|+|+|++... ..++++|.+|++.|..+++.. .+.
T Consensus 69 ~Gvail~k~~~~~~~~~~~~--~~~d~~gr~i~~~~~~~~i~~vy~p~~~~~--~~~~~~r~~~~~~l~~~~~~~~~~~~ 144 (265)
T 3g91_A 69 SGVAMYTKVPPSSLREGFGV--ERFDTEGRIQIADFDDFLLYNIYFPNGAMS--EERLKYKLEFYDAFLEDVNRERDSGR 144 (265)
T ss_dssp CCEEEEESSCCSEEECCCSC--HHHHSBSCEEEEECSSCEEEEEECCCCTTC--HHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred CEEEEEEecChHHhccCCCC--cccCCcCCEEEEEeCCEEEEEEEecCCCCC--chhHHHHHHHHHHHHHHHHHHHcCCC
Confidence 48999999999888877653 346689999999999999999999998863 356777889999998888764 368
Q ss_pred CEEEEcCCCccCCCCcCCChhhhhhhhcCCCCCCCCCCCCCCCCCHHHHHHHHHHHhcCCeeEeeeccCCCCCCCCceec
Q 026782 82 PLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSW 161 (233)
Q Consensus 82 ~vIi~GDFN~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~er~~~~~l~~~~~l~D~~r~~~p~~~~~~~~T~ 161 (233)
++|||||||+++..+|..++.. +.+..++++.+++++..+++.| |+|+||..+|.. ..|||
T Consensus 145 ~~ii~GDfN~~~~~~d~~~~~~---------------~~~~~~~~~~~~~~~~~l~~~g-l~D~~r~~~p~~---~~yT~ 205 (265)
T 3g91_A 145 NVIICGDFNTAHREIDLARPKE---------------NSNVSGFLPVERAWIDKFIENG-YVDTFRMFNSDP---GQYTW 205 (265)
T ss_dssp CEEEEEECCCCCSGGGBSCTGG---------------GTTSTTSCHHHHHHHHHHHHTT-EEETHHHHCCCS---CCCSB
T ss_pred CEEEECccccCCchhhccCHhh---------------cCCCCccCHHHHHHHHHHHhcC-cEEeeHhhCCCC---CCCCC
Confidence 9999999999999888876532 2245788999999999999655 999999999987 47999
Q ss_pred cCCCCCCc-CCCcceeeEEEeChhhhhceeeEEEecCCcCCCCCCCCCcCceEEEEeccCCCch
Q 026782 162 SGNPIGKY-RGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELSEASSDSE 224 (233)
Q Consensus 162 ~~~~~~~~-~~~~~RID~i~vs~~l~~~v~~~~i~~~~~~~~~~~~SDH~PV~~~l~~~~~~~~ 224 (233)
++..++.+ .+.++||||||+|+.+..++.++.|.+. ..+|||+||++++.....|..
T Consensus 206 ~~~~~~~~~~~~~~rID~il~s~~~~~~~~~~~i~~~------~~~SDH~Pv~~~~~~~~~~~~ 263 (265)
T 3g91_A 206 WSYRTRARERNVGWRLDYFFVNEEFKGKVKRSWILSD------VMGSDHCPIGLEIELLEHHHH 263 (265)
T ss_dssp CCSSTTTTTTTCCBCCEEEEEEGGGGGGEEEEEECTT------CCSSSBCCEEEEEECCCCC--
T ss_pred cCCCCCccccCceEEEEEEEECHHHHhhhcEEEEeCC------CCCCCcceEEEEhhhhhhccc
Confidence 98765433 4568899999999999999999999863 468999999999988776653
No 2
>2j63_A AP-endonuclease; base excision repair, lyase; 2.48A {Leishmania major}
Probab=100.00 E-value=4.5e-32 Score=243.49 Aligned_cols=190 Identities=26% Similarity=0.389 Sum_probs=145.8
Q ss_pred eEEEEEeecccC------eeeeccCCC---------------CCCCCCCCCEEEEEE----------CCEEEEEEEecCC
Q 026782 4 FICLFYVCLCNN------SSVFHFLLS---------------ALKYEPDGRVILAEF----------ETFYLLNTYAPNN 52 (233)
Q Consensus 4 ~~~~i~sr~~~~------~~~~~~~~~---------------~~~~d~~gR~i~~~~----------~~~~l~nvy~P~~ 52 (233)
.|||||||.|+. .+..+++.. ....|.+||+|.+++ ..|.|+|+|+|++
T Consensus 221 ~GVAIlsR~pi~~~~l~~~~~~~~~~p~~~~~~~~~gs~~~~~~~~D~egR~I~a~~~~~g~~~~~~~~~~vinvYlP~~ 300 (467)
T 2j63_A 221 SGTRTYMKNSTTVKGLHARCTRGFALPSEPQADAAAGSRVLVEGAGDEEGRVLTTFLSPDPDSASSSSRIALVNTYVANS 300 (467)
T ss_dssp CCEEEEEECCCCCCTSCCEEEESSCCCCC-----------CCCCCCCTTCCEEEEEECSSCCC----CCEEEEEEECCCC
T ss_pred ceEEEEEeCCccccccceeeeeccccccccccccccccccccccccCCCCcEEEEEEEeCCcccccCceEEEEEEECCCC
Confidence 489999999983 344444310 024678999999998 5799999999998
Q ss_pred CCCCccchHHHHH-HHHHHHHHHHHhc--------------------CCCCEEEEcCCCccCCCCcCCC---hhhhhhhh
Q 026782 53 GWKEEENSFQRRR-KWDKRIQEFVLQC--------------------SGKPLIWCGDLNVSHEEIDVSH---PEFFAAAK 108 (233)
Q Consensus 53 ~~~~~~~~~~~r~-~~~~~l~~~l~~~--------------------~~~~vIi~GDFN~~~~~~D~~~---~~~~~~~~ 108 (233)
+... .++.+|. .|++.|.++|+.. .+.++|||||||+++.++|.++ +..
T Consensus 301 ~~~~--~r~~~K~~~~~~~L~~~l~~l~~~~~~~~~~r~~~a~g~~~~~~pvIL~GDFN~~p~~~D~~~~~~~~~----- 373 (467)
T 2j63_A 301 GMGL--TRLPYRVQSFDPSMREYLHRLDTWATENAAVPSAAAMGSGSSPHGFIWAGDLNVAERDYDRYYAGTFKS----- 373 (467)
T ss_dssp CTTS--TTHHHHHHTHHHHHHHHHHHHHHHHTTTTC----------CCSCEEEEEEECCCCCSTTSBCCCSCHHH-----
T ss_pred Ccch--HHHHHHHHHHHHHHHHHHHHhhhhcccccccchhhhhcccccCCcEEEeccccCCCchhhhccccchhh-----
Confidence 7533 3455665 4556666666542 2579999999999998888876 332
Q ss_pred cCCCCCCCCCCCCCCCCCHHHHHHHHHHHhcCCeeEeeeccCCCCCCCCceeccCCCCCC-cCCCcceeeEEEeChhhhh
Q 026782 109 LNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIGK-YRGKRMRIDYFIVSEELKD 187 (233)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~er~~~~~l~~~~~l~D~~r~~~p~~~~~~~~T~~~~~~~~-~~~~~~RID~i~vs~~l~~ 187 (233)
+.+..+|+++||++|..++...+|+|+||.++|... ..|||+++..+. ..+.++||||||+++.+..
T Consensus 374 ----------~~~~~gf~~~er~~~~~lL~~~gL~DafR~~~p~~~--~~yTw~s~r~~~~~~n~g~RIDyIlvS~~l~~ 441 (467)
T 2j63_A 374 ----------MQECSGFAPEERMSFRETMQRTNSVDIFRQLYPQAG--PVYSFWSQRINGRPRNLGWRLDYFVVSSRLAS 441 (467)
T ss_dssp ----------HTTSTTSCHHHHHHHHHHHHHTTEEEHHHHHCTTBC--SCCSBCCTTTTTTTTTCCBCCEEEEEEGGGGG
T ss_pred ----------cccccccCHHHHHHHHHHHhhCCCEEehHhhCCCCC--CCccccCCCCCcccCCCCceeEEEEEcHHHHc
Confidence 124568999999999999866569999999998642 369999875443 2467899999999999998
Q ss_pred ceeeEEEecCCcCCCCCCCCCcCceEEEEec
Q 026782 188 RIIACEMQGHGIELEGFYGSDHCPVSLELSE 218 (233)
Q Consensus 188 ~v~~~~i~~~~~~~~~~~~SDH~PV~~~l~~ 218 (233)
++.+|.|.+. ..+||||||+++|.+
T Consensus 442 ~v~~~~I~~~------~~~SDH~PV~~~l~~ 466 (467)
T 2j63_A 442 YVVDCFPMPT------VMGSDHCPFQMWMRH 466 (467)
T ss_dssp GEEEEEECTT------CCSSSBCCEEEEEEC
T ss_pred ceeEEEECCC------CCCCCcccEEEEEEc
Confidence 8999999863 478999999999976
No 3
>2voa_A AF_EXO, XTHA, exodeoxyribonuclease III; EXOIII, AP endonuclease, lyase; 1.7A {Archaeoglobus fulgidus}
Probab=99.97 E-value=4.6e-30 Score=212.32 Aligned_cols=190 Identities=22% Similarity=0.340 Sum_probs=145.3
Q ss_pred eEEEEEeecccCeeeeccCCCCCCCCCCCCEEEEEECCEEEEEEEecCCCCCCccchHHHHHHHHHHHHHHHHhc--CCC
Q 026782 4 FICLFYVCLCNNSSVFHFLLSALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC--SGK 81 (233)
Q Consensus 4 ~~~~i~sr~~~~~~~~~~~~~~~~~d~~gR~i~~~~~~~~l~nvy~P~~~~~~~~~~~~~r~~~~~~l~~~l~~~--~~~ 81 (233)
.||||+||.|+..+...++.. ..| +||++.++++.+.|+|+|+|+..... ..++++|.+|++.|.++++.. .+.
T Consensus 64 ~G~ailsr~~~~~~~~~~~~~--~~~-~~r~l~~~~~~~~v~~~h~p~~~~~~-~~~~~~r~~~~~~l~~~~~~~~~~~~ 139 (257)
T 2voa_A 64 NGVAIASLEEPEDVSFGLDSE--PKD-EDRLIRAKIAGIDVINTYVPQGFKID-SEKYQYKLQWLERLYHYLQKTVDFRS 139 (257)
T ss_dssp EEEEEEESSCCEEEEESCSSS--SCC-GGGEEEEEETTEEEEEEECCCCSCTT-SHHHHHHHHHHHHHHHHHHHHCCTTS
T ss_pred cEEEEEEccChHHheecCCCC--ccc-cCcEEEEEECCEEEEEEEeCCCCCCC-cHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 599999999988776666632 245 89999999999999999999976421 134556777888888888753 467
Q ss_pred CEEEEcCCCccCCCCcCCChhhhhhhhcCCCCCCCCCCCCCCCCCHHHHHHHHHHHhcCCeeEeeeccCCCCCCCCceec
Q 026782 82 PLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSW 161 (233)
Q Consensus 82 ~vIi~GDFN~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~er~~~~~l~~~~~l~D~~r~~~p~~~~~~~~T~ 161 (233)
++|||||||+.+.+.|.+++..+ .+..++++.+++.+..+++.+ |+|+||..+|.. ..|||
T Consensus 140 p~Il~GDFN~~~~~~d~~~~~~~---------------~~~~~~~~~~~~~~~~l~~~~-l~D~~~~~~p~~---~~~T~ 200 (257)
T 2voa_A 140 FAVWCGDMNVAPEPIDVHSPDKL---------------KNHVCFHEDARRAYKKILELG-FVDVLRKIHPNE---RIYTF 200 (257)
T ss_dssp CEEEEEECSCCCSGGGBSCGGGC---------------TTSTTTCHHHHHHHHHHHTTT-CEEHHHHHSTTC---CCCSB
T ss_pred CEEEEeeCCCCCchhhccChhHh---------------CCCCCCCHHHHHHHHHHHHcC-cEeeehhhCCCC---CCcce
Confidence 99999999999888787664321 234577888888999888655 999999998875 36999
Q ss_pred cCC-CCCCc-CCCcceeeEEEeChhhhhceeeEEEecCCcCCCCCCCCCcCceEEEEec
Q 026782 162 SGN-PIGKY-RGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELSE 218 (233)
Q Consensus 162 ~~~-~~~~~-~~~~~RID~i~vs~~l~~~v~~~~i~~~~~~~~~~~~SDH~PV~~~l~~ 218 (233)
++. .++.+ .+.+.||||||+++.+...+.++.|.+... ....+|||+||+++|++
T Consensus 201 ~~~~~~~~~~~~~~~rID~i~~s~~~~~~~~~~~v~~~~~--~~~~~SDH~pv~~~l~~ 257 (257)
T 2voa_A 201 YDYRVKGAIERGLGWRGDAILATPPLAERCVDCYADIKPR--LAEKPSDHLPLVAVFDV 257 (257)
T ss_dssp CCTTSTTTTTTTCCBCCEEEEECHHHHTTEEEEEECCHHH--HSSSCCSBCCEEEEECC
T ss_pred eccccCCceecCceEEEEEEEECHHHHhhhheeEeehhhc--cCCCCCCccCEEEEEeC
Confidence 876 43322 245789999999999998899999876310 01368999999999864
No 4
>1hd7_A DNA-(apurinic or apyrimidinic site) lyase; DNA repair, endonuclease, APE1, HAP1, REF-1; 1.95A {Homo sapiens} SCOP: d.151.1.1 PDB: 1e9n_A 3u8u_A 2isi_A
Probab=99.97 E-value=3.2e-30 Score=221.08 Aligned_cols=187 Identities=31% Similarity=0.543 Sum_probs=145.6
Q ss_pred eEEEEEeecccCeeeeccCCCCCCCCCCCCEEEEEECCEEEEEEEecCCCCCCccchHHHHHHHHHHHHHHHHhc-CCCC
Q 026782 4 FICLFYVCLCNNSSVFHFLLSALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKP 82 (233)
Q Consensus 4 ~~~~i~sr~~~~~~~~~~~~~~~~~d~~gR~i~~~~~~~~l~nvy~P~~~~~~~~~~~~~r~~~~~~l~~~l~~~-~~~~ 82 (233)
.|||||||.|+..+.++++. ...+.+||++.++++.+.|+|+|+|+.... ..++++|.+|++.|..+++.. ...+
T Consensus 129 ~Gvailsr~~~~~~~~~~~~--~~~~~~~r~l~~~~~~~~v~~vh~p~~~~~--~~~~~~r~~~~~~l~~~l~~~~~~~p 204 (318)
T 1hd7_A 129 SGVGLLSRQCPLKVSYGIGD--EEHDQEGRVIVAEFDSFVLVTAYVPNAGRG--LVRLEYRQRWDEAFRKFLKGLASRKP 204 (318)
T ss_dssp CCEEEEESSCCSEEEESCSC--GGGSSSSCEEEEECSSCEEEEEECCCCCGG--GTTHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred ceEEEEEcCCceeEEecCCC--cccCCCCcEEEEEcCCEEEEEEEcCCCCCc--cccHHHHHHHHHHHHHHHHhcccCCC
Confidence 48999999998887776653 235679999999999999999999987743 234566788888888887643 2379
Q ss_pred EEEEcCCCccCCCCcCCChhhhhhhhcCCCCCCCCCCCCCCCCCHHHHHHH-HHHHhcCCeeEeeeccCCCCCCCCceec
Q 026782 83 LIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRF-GAILKEGRLIDAYRFLHKEKDMDCGFSW 161 (233)
Q Consensus 83 vIi~GDFN~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~er~~~-~~l~~~~~l~D~~r~~~p~~~~~~~~T~ 161 (233)
+|||||||+.+..+|.+++... .+..++++.++..+ ..+++.+ |+|+||..+|... ..|||
T Consensus 205 vIl~GDFN~~~~~~D~~~~~~~---------------~~~~g~~~~~~~~~~~~ll~~~-l~D~~r~~~p~~~--~~~T~ 266 (318)
T 1hd7_A 205 LVLCGDLNVAHEEIDLRNPKGN---------------KKNAGFTPQERQGFGELLQAVP-LADSFRHLYPNTP--YAYTF 266 (318)
T ss_dssp EEEEEECSCCCSGGGBSCHHHH---------------TTSTTSCHHHHHHHHHHHHHTT-CEEHHHHHCTTCT--TCCSB
T ss_pred EEEEeeCCCCChhhhccChhhc---------------CCCCCcCHHHHHHHHHHHhhCC-CEEeehhhCCCCC--CCcce
Confidence 9999999999888887655311 13467888899999 8888875 9999999998752 25999
Q ss_pred cCCCCCCc-CCCcceeeEEEeChhhhhceeeEEEecCCcCCCCCCCCCcCceEEEEec
Q 026782 162 SGNPIGKY-RGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELSE 218 (233)
Q Consensus 162 ~~~~~~~~-~~~~~RID~i~vs~~l~~~v~~~~i~~~~~~~~~~~~SDH~PV~~~l~~ 218 (233)
++..+..+ .+.+.||||||+++.+...+.++.|... ..+|||+||+++|.+
T Consensus 267 ~~~~~~~~~~~~~~rID~il~s~~~~~~v~~~~v~~~------~~~SDH~Pv~~~l~l 318 (318)
T 1hd7_A 267 WTYMMNARSKNVGWRLDYFLLSHSLLPALCDSKIRSK------ALGSDHCPITLYLAL 318 (318)
T ss_dssp CCSGGGHHHHTCCBCCEEEEECGGGGGGEEEEEECTT------CCSSSBCCEEEEECC
T ss_pred ECCcCCCcccCCceEEEEEEECHHHHhhhhheEeecc------CCCCCccCEEEEecC
Confidence 87643211 2346899999999999888899999853 357999999999864
No 5
>2jc4_A Exodeoxyribonuclease III; hydrolase, repair phosphodiesterase, DNA repair, exonuclease, endonuclease; HET: 1PE; 1.90A {Neisseria meningitidis}
Probab=99.97 E-value=2.1e-29 Score=207.78 Aligned_cols=191 Identities=23% Similarity=0.308 Sum_probs=145.7
Q ss_pred eEEEEEeecccCeeeeccCCCCCCCCCCCCEEEEEECCEEEEEEEecCCCCCCccchHHHHHHHHHHHHHHHHhc--CCC
Q 026782 4 FICLFYVCLCNNSSVFHFLLSALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC--SGK 81 (233)
Q Consensus 4 ~~~~i~sr~~~~~~~~~~~~~~~~~d~~gR~i~~~~~~~~l~nvy~P~~~~~~~~~~~~~r~~~~~~l~~~l~~~--~~~ 81 (233)
.||||+||.|+..+...++.. ..+.++|++.++++.+.|+|+|+|+..... ..++.+|.++++.|.++++.. .+.
T Consensus 63 ~G~ailsr~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~v~~~h~~~~~~~~-~~~~~~r~~~~~~l~~~~~~~~~~~~ 139 (256)
T 2jc4_A 63 NGVAIVSRSVPQDVHFGLPAL--PDDPQRRVIAATVSGVRVINVYCVNGEALD-SPKFKYKEQWFAALTEFVRDEMTRHG 139 (256)
T ss_dssp CCEEEEESSCCEEEEESCTTS--TTCCSCCEEEEEETTEEEEEEECCCCCSTT-SHHHHHHHHHHHHHHHHHHHHHTTCS
T ss_pred eEEEEEECCChHHheecCCCC--ccCCcCcEEEEEeCCEEEEEEEecCCCCCC-cHhHHHHHHHHHHHHHHHHHHhcCCC
Confidence 489999999988776666532 356799999999999999999999987532 234556777888888887653 578
Q ss_pred CEEEEcCCCccCCCCcCCChhhhhhhhcCCCCCCCCCCCCCCCCCHHHHHHHHHHHhcCCeeEeeeccCCCCCCCCceec
Q 026782 82 PLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSW 161 (233)
Q Consensus 82 ~vIi~GDFN~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~er~~~~~l~~~~~l~D~~r~~~p~~~~~~~~T~ 161 (233)
++|||||||+.+...|..++..+ .+..++.+.+++.++.+++.+ |+|+|+..+|.. ..|||
T Consensus 140 ~~il~GDFN~~~~~~d~~~~~~~---------------~~~~~~~~~~~~~~~~l~~~~-l~D~~~~~~~~~---~~~T~ 200 (256)
T 2jc4_A 140 KLVLLGDFNIAPADADCYDPEKW---------------HEKIHCSSVERQWFQNLLDLG-LTDSLRQVHPEG---AFYTW 200 (256)
T ss_dssp SEEEEEECCCCCSGGGBSSGGGG---------------TTCTTSCHHHHHHHHHHHTTT-CEEHHHHHCCSS---CCCCB
T ss_pred CEEEEeECCCCCchhhccChhHh---------------CCCCCcCHHHHHHHHHHHhcC-cEEhhhhhCCCC---Cceee
Confidence 99999999998877776554311 234577888888999888665 999999988875 36999
Q ss_pred cCCCCCCc-CCCcceeeEEEeChhhhhceeeEEEecCCcCCCCCCCCCcCceEEEEec
Q 026782 162 SGNPIGKY-RGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELSE 218 (233)
Q Consensus 162 ~~~~~~~~-~~~~~RID~i~vs~~l~~~v~~~~i~~~~~~~~~~~~SDH~PV~~~l~~ 218 (233)
+++..+.+ .+.+.||||||+++.+...+.+++|..... ....+|||+||+++|++
T Consensus 201 ~~~~~~~~~~~~~~rID~i~~s~~~~~~~~~~~v~~~~~--~~~~~SDH~pv~~~l~l 256 (256)
T 2jc4_A 201 FDYRGAMFQRKLGLRIDHILVSPAMAAALKDVRVDLETR--ALERPSDHAPVTAEFDW 256 (256)
T ss_dssp CCTTTTHHHHTCCBCCEEEEECHHHHTTEEEEEECHHHH--TSSSCCSBCCEEEEECC
T ss_pred EcCCCCccccCcEEEEEEEEECHHHHhheeEEEEEhhcc--cCCCCCCcccEEEEecC
Confidence 87654322 234689999999999988899999976311 12478999999999864
No 6
>2jc5_A Exodeoxyribonuclease; hydrolase, repair phosphodiesterase, DNA repair, exonuclease, endonuclease; HET: BCN DIO GOL; 1.50A {Neisseria meningitidis}
Probab=99.97 E-value=1.3e-29 Score=209.35 Aligned_cols=188 Identities=22% Similarity=0.384 Sum_probs=144.9
Q ss_pred eEEEEEeecccCeeeeccCCCCCCCCCCCCEEEEEECCEEEEEEEecCCCCCCccchHHHHHHHHHHHHHHHHhc--CCC
Q 026782 4 FICLFYVCLCNNSSVFHFLLSALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC--SGK 81 (233)
Q Consensus 4 ~~~~i~sr~~~~~~~~~~~~~~~~~d~~gR~i~~~~~~~~l~nvy~P~~~~~~~~~~~~~r~~~~~~l~~~l~~~--~~~ 81 (233)
.||||+||.|+..+..+++. ...+.+||++.++++.+.|+|+|+|+.... ..+..+|.++++.|.++++.. .+.
T Consensus 67 ~G~ailsr~~~~~~~~~~~~--~~~~~~~r~~~~~~~~~~v~~~h~~~~~~~--~~r~~~~~~~~~~l~~~~~~~~~~~~ 142 (259)
T 2jc5_A 67 SGVAVYSKRKPDNVQIGMGI--EEFDREGRFVRCDFGRLSVISLYLPSGSSA--EERQQVKYRFLDAFYPMLEAMKNEGR 142 (259)
T ss_dssp CCEEEEESSCCSEEEESCSC--HHHHTTCCEEEEEETTEEEEEEECCCCTTC--HHHHHHHHHHHHHHHHHHHHHHHTCS
T ss_pred ceEEEEEecCceeEEeCCCC--CccCCCCeEEEEEcCCEEEEEEeccCCCCC--cHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 58999999999887766653 234678999999999999999999998753 234445667788888877653 468
Q ss_pred CEEEEcCCCccCCCCcCCChhhhhhhhcCCCCCCCCCCCCCCCCCHHHHHHHHHHHhcCCeeEeeeccCCCCCCCCceec
Q 026782 82 PLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSW 161 (233)
Q Consensus 82 ~vIi~GDFN~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~er~~~~~l~~~~~l~D~~r~~~p~~~~~~~~T~ 161 (233)
++|||||||+.+...|.+.+. .+....++.+.+++.+..++...+|+|+|+..+|.. ..|||
T Consensus 143 ~~Il~GDFN~~~~~~d~~~~~---------------~~~~~~~~~~~~~~~~~~~l~~~~l~d~~~~~~~~~---~~~T~ 204 (259)
T 2jc5_A 143 DIVVCGDWNIAHQNIDLKNWK---------------GNQKNSGFLPEEREWIGKVIHKLGWTDMWRTLYPDV---PGYTW 204 (259)
T ss_dssp EEEEEEECCCCCSGGGBSCST---------------TCTTSTTSCHHHHHHHHHHHHTTCCEEHHHHHCTTC---CCCCE
T ss_pred CEEEEeeCCCCCchhhccChh---------------hcCCCCCcCHHHHHHHHHHhccCCcEEeeHhhCCCC---CCccE
Confidence 999999999998877765432 112345778888889999985556999999988865 35999
Q ss_pred cCCCCCCc-CCCcceeeEEEeChhhhhceeeEEEecCCcCCCCCCCCCcCceEEEEecc
Q 026782 162 SGNPIGKY-RGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELSEA 219 (233)
Q Consensus 162 ~~~~~~~~-~~~~~RID~i~vs~~l~~~v~~~~i~~~~~~~~~~~~SDH~PV~~~l~~~ 219 (233)
++..+..+ .+.+.||||||+++.+..++.++.|... ..+|||+||+++|.++
T Consensus 205 ~~~~~~~~~~~~~~rID~i~~s~~~~~~~~~~~v~~~------~~~SDH~pv~~~l~~~ 257 (259)
T 2jc5_A 205 WSNRGQAYAKDVGWRIDYQMVTPELAAKAVSAHVYKD------EKFSDHAPLVVEYDYA 257 (259)
T ss_dssp ESCSSHHHHTTCEECCEEEEECHHHHTTEEEEEECCS------SCCSSBCCEEEEESCC
T ss_pred ECCcCCCccCCCeeEEEEEEECHHHHhHHhheeecCC------CCCCCcccEEEEEecc
Confidence 87643211 2346899999999999888999999752 4789999999999875
No 7
>2o3h_A DNA-(apurinic or apyrimidinic site) lyase; APE, endonuclease; 1.90A {Homo sapiens} PDB: 1bix_A 1dew_A* 1de8_B* 1de9_A* 2o3c_A
Probab=99.97 E-value=2.1e-29 Score=211.90 Aligned_cols=187 Identities=31% Similarity=0.560 Sum_probs=144.5
Q ss_pred eEEEEEeecccCeeeeccCCCCCCCCCCCCEEEEEECCEEEEEEEecCCCCCCccchHHHHHHHHHHHHHHHHhc-CCCC
Q 026782 4 FICLFYVCLCNNSSVFHFLLSALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKP 82 (233)
Q Consensus 4 ~~~~i~sr~~~~~~~~~~~~~~~~~d~~gR~i~~~~~~~~l~nvy~P~~~~~~~~~~~~~r~~~~~~l~~~l~~~-~~~~ 82 (233)
.||||+||.|+.++..+++. ...+.+||++.++++.+.|+|+|+|+.... ..++++|.++++.|.++++.. ...+
T Consensus 96 ~Gvailsr~~~~~~~~~~~~--~~~~~~~r~l~~~~~~~~v~~~h~p~~~~~--~~~~~~r~~~~~~l~~~l~~~~~~~p 171 (285)
T 2o3h_A 96 SGVGLLSRQCPLKVSYGIGD--EEHDQEGRVIVAEFDSFVLVTAYVPNAGRG--LVRLEYRQRWDEAFRKFLKGLASRKP 171 (285)
T ss_dssp CCEEEEESSCCSEEEESCSC--GGGSSBCCEEEEECSSCEEEEEECCCCCGG--GTTHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred ceEEEEEccChHHeeeccCC--cccCCCCcEEEEEeCCEEEEEEEcCCCCCc--chhHHHHHHHHHHHHHHHHhhccCCC
Confidence 48999999998877766542 235679999999999999999999987643 234566788888888887653 4589
Q ss_pred EEEEcCCCccCCCCcCCChhhhhhhhcCCCCCCCCCCCCCCCCCHHHHHHH-HHHHhcCCeeEeeeccCCCCCCCCceec
Q 026782 83 LIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRF-GAILKEGRLIDAYRFLHKEKDMDCGFSW 161 (233)
Q Consensus 83 vIi~GDFN~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~er~~~-~~l~~~~~l~D~~r~~~p~~~~~~~~T~ 161 (233)
+|||||||+.+...|.+++. .+.+..++++.+++.+ ..+++.+ |+|+||..+|... ..|||
T Consensus 172 ~Il~GDFN~~~~~~D~~~~~---------------~~~~~~g~~~~~~~~~~~~~l~~~-l~D~~~~~~~~~~--~~~T~ 233 (285)
T 2o3h_A 172 LVLCGDLNVAHEEIDLRNPK---------------GNKKNAGFTPQERQGFGELLQAVP-LADSFRHLYPNTP--YAYTF 233 (285)
T ss_dssp EEEEEECSCCCSGGGBSCTT---------------TCTTSTTSCHHHHHHHHHHHHHTT-CEEHHHHHCTTCC--SCCSB
T ss_pred EEEEEECCCCCchhhccChh---------------hcCCCCCcCHHHHHHHHHHHhcCC-CEEEEEecCCCCC--CcEeE
Confidence 99999999988877765432 1123457888889999 8988884 9999999988652 24999
Q ss_pred cCCCCCCc-CCCcceeeEEEeChhhhhceeeEEEecCCcCCCCCCCCCcCceEEEEec
Q 026782 162 SGNPIGKY-RGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELSE 218 (233)
Q Consensus 162 ~~~~~~~~-~~~~~RID~i~vs~~l~~~v~~~~i~~~~~~~~~~~~SDH~PV~~~l~~ 218 (233)
++..+..+ .+.+.||||||+++.+...+.+++|... ..+|||+||+++|++
T Consensus 234 ~~~~~~~~~~~~~~rID~i~~s~~~~~~v~~~~v~~~------~~~SDH~pv~~~l~l 285 (285)
T 2o3h_A 234 WTYMMNARSKNVGWRLDYFLLSHSLLPALCDSKIRSK------ALGSDHCPITLYLAL 285 (285)
T ss_dssp CCSSTTHHHHTCCBCCEEEEECGGGGGGEEEEEECTT------CCSSSBCCEEEEECC
T ss_pred ecCcCCccccCceeEEEEEEECHHHHhhhhheEeecc------CCCCCeecEEEEecC
Confidence 87643211 2346799999999999888899999863 357999999999864
No 8
>1ako_A Exonuclease III; AP-endonuclease, DNA repair; 1.70A {Escherichia coli} SCOP: d.151.1.1
Probab=99.96 E-value=5.2e-28 Score=200.73 Aligned_cols=198 Identities=20% Similarity=0.304 Sum_probs=142.5
Q ss_pred eEEEEEeecccCeeeeccCCCCCCCCCCCCEEEEEEC----CEEEEEEEecCCCCCCccchHHHHHHHHHHHHHHHHhc-
Q 026782 4 FICLFYVCLCNNSSVFHFLLSALKYEPDGRVILAEFE----TFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC- 78 (233)
Q Consensus 4 ~~~~i~sr~~~~~~~~~~~~~~~~~d~~gR~i~~~~~----~~~l~nvy~P~~~~~~~~~~~~~r~~~~~~l~~~l~~~- 78 (233)
.||||+||.|+..+..+++.. ..+.+++++.+++. .+.|+|+|+|+........++..|.++++.|.++++..
T Consensus 63 ~G~ailsr~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~v~~~Hl~~~~~~~~~~~~~~r~~~~~~l~~~~~~~~ 140 (268)
T 1ako_A 63 YGVALLTKETPIAVRRGFPGD--DEEAQRRIIMAEIPSLLGNVTVINGYFPQGESRDHPIKFPAKAQFYQNLQNYLETEL 140 (268)
T ss_dssp EEEEEEESSCCSEEEESSTTC--CHHHHTTEEEEEEEETTEEEEEEEEECCCCCBTTCTTHHHHHHHHHHHHHHHHHHHC
T ss_pred ceEEEEEecCcceeeeCCCCc--ccccCCCEEEEEEEcCCCeEEEEEEEecCCCCcccchhHHHHHHHHHHHHHHHHHhh
Confidence 599999999998887766531 12457889988874 79999999998764322234556788888888888753
Q ss_pred -CCCCEEEEcCCCccCCCCcCCChhhhhhhhcCCCCCCCCCCCCCCCCCHHHHHHHHHHHhcCCeeEeeeccCCCCCCCC
Q 026782 79 -SGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDC 157 (233)
Q Consensus 79 -~~~~vIi~GDFN~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~er~~~~~l~~~~~l~D~~r~~~p~~~~~~ 157 (233)
.+.++|||||||+.+.+.|......-...+. ..+..++++.+++.++.+.+.+ |+|+||..+|... .
T Consensus 141 ~~~~~~Il~GDFN~~~~~~~~~~~~~~~~~w~---------~~~~~~~~~~~~~~~~~l~~~g-l~D~~~~~~~~~~--~ 208 (268)
T 1ako_A 141 KRDNPVLIMGDMNISPTDLDIGIGEENRKRWL---------RTGKCSFLPEEREWMDRLMSWG-LVDTFRHANPQTA--D 208 (268)
T ss_dssp CTTSCEEEEEECCCCCSGGGBCSCHHHHHHHH---------HHTBTTSCHHHHHHHHHHHHTT-EEEHHHHHSTTCC--S
T ss_pred hCCCCEEEEeECCCCCchhcccCcccChhhhc---------cCCCcCcCHHHHHHHHHHhcCC-CEEeEhhhCCCCC--C
Confidence 4679999999999988766643210000000 0023567888888888887765 9999999998753 4
Q ss_pred ceeccCCCCCCc-CCCcceeeEEEeChhhhhceeeEEEecCCcCCCCCCCCCcCceEEEEe
Q 026782 158 GFSWSGNPIGKY-RGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 217 (233)
Q Consensus 158 ~~T~~~~~~~~~-~~~~~RID~i~vs~~l~~~v~~~~i~~~~~~~~~~~~SDH~PV~~~l~ 217 (233)
.|||+++..+.+ .+.+.||||||+++.+...+.++.|.+... ....+|||+||+++|+
T Consensus 209 ~~T~~~~~~~~~~~~~~~riD~il~s~~~~~~~~~~~i~~~~~--~~~~~SDH~pv~~~l~ 267 (268)
T 1ako_A 209 RFSWFDYRSKGFDDNRGLRIDLLLASQPLAECCVETGIDYEIR--SMEKPSDHAPVWATFR 267 (268)
T ss_dssp CCSBCCTTTTHHHHTCCBCCEEEEEEHHHHTTEEEEEECHHHH--TSSSCCSBCCEEEEEC
T ss_pred CeeEeCCcCCccccCceEEEEEEEeCHHHHHHHHhceechhhc--CCCCCCCcccEEEEcc
Confidence 699988654322 234689999999999988888999875310 1237899999999985
No 9
>1vyb_A ORF2 contains A reverse transcriptase domain; endonuclease, APE-1 type, retrotransposition, retrotransposon, transferase; 1.8A {Homo sapiens} SCOP: d.151.1.1 PDB: 2v0s_A 2v0r_A
Probab=99.94 E-value=1.1e-26 Score=189.22 Aligned_cols=162 Identities=24% Similarity=0.315 Sum_probs=120.9
Q ss_pred eEEEEEeecc-cCeeeeccCCCCCCCCCCCCEEEEEE----CCEEEEEEEecCCCCCCccchHHHHHHHHHHHHHHHHhc
Q 026782 4 FICLFYVCLC-NNSSVFHFLLSALKYEPDGRVILAEF----ETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC 78 (233)
Q Consensus 4 ~~~~i~sr~~-~~~~~~~~~~~~~~~d~~gR~i~~~~----~~~~l~nvy~P~~~~~~~~~~~~~r~~~~~~l~~~l~~~ 78 (233)
.||||+||.+ +..+.. . ..|.+||++.+++ ..+.++|+|+|+... .++++.+.+.+.+.
T Consensus 72 ~Gvail~r~~~~~~~~~-~-----~~~~~~r~i~~~~~~~~~~~~v~~~y~p~~~~----------~~~~~~l~~~l~~~ 135 (238)
T 1vyb_A 72 AGVAILVSDKTDFKPTK-I-----KRDKEGHYIMVKGSIQQEELTILNIYAPNTGA----------PRFIKQVLSDLQRD 135 (238)
T ss_dssp CCEEEEECTTCCCEEEE-E-----EECTTSSEEEEEEEETTEEEEEEEEECCSSSH----------HHHHHHHHHHTTTT
T ss_pred ceEEEEEeCCCCccccc-e-----eEcCCCcEEEEEEEeCCCcEEEEEEecCCCCc----------HHHHHHHHHHHHhc
Confidence 3899999987 333322 2 1346899998877 279999999998762 12455566666544
Q ss_pred CCCCEEEEcCCCccCCCCcCCChhhhhhhhcCCCCCCCCCCCCCCCCCHHHHHHHHHHHhcCCeeEeeeccCCCCCCCCc
Q 026782 79 SGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCG 158 (233)
Q Consensus 79 ~~~~vIi~GDFN~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~er~~~~~l~~~~~l~D~~r~~~p~~~~~~~ 158 (233)
.+.++|||||||+.+...|... .++.+.+++.+.++++..+|+|+||..+|.. ..
T Consensus 136 ~~~~~Il~GDFN~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~l~d~~~~~~~~~---~~ 190 (238)
T 1vyb_A 136 LDSHTLIMGDFNTPLSTLDRST----------------------RQKVNKDTQELNSALHQADLIDIYRTLHPKS---TE 190 (238)
T ss_dssp CCTTEEEEEECSSCSSGGGBTT----------------------CCCCCHHHHHHHHHHHHTTEEEHHHHHCTTC---CC
T ss_pred cCCCEEEEccCCCCCCccccCC----------------------CCCCcHHHHHHHHHHhhCCCEEhhHhhCCCC---Cc
Confidence 5679999999999877655432 2334556778888886666999999988865 46
Q ss_pred eeccCCCCCCcCCCcceeeEEEeChhhhhceeeEEEecCCcCCCCCCCCCcCceEEEEe
Q 026782 159 FSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELS 217 (233)
Q Consensus 159 ~T~~~~~~~~~~~~~~RID~i~vs~~l~~~v~~~~i~~~~~~~~~~~~SDH~PV~~~l~ 217 (233)
|||++... +.+.||||||+++.+...+.+++|.+ ..+|||+||+++|+
T Consensus 191 ~T~~~~~~----~~~~rID~i~~s~~~~~~~~~~~v~~-------~~~SDH~pv~~~l~ 238 (238)
T 1vyb_A 191 YTFFSAPH----HTYSKIDHIVGSKALLSKCKRTEIIT-------NYLSDHSAIKLELR 238 (238)
T ss_dssp CSEEETTT----TEEECCEEEEEEGGGGGGEEEEEEEC-------CSSSSSCEEEEEEC
T ss_pred eeEEcCCC----CcccceEEEEeCHHHHhhhhhceeec-------CCCCCcccEEEEeC
Confidence 99987543 23579999999999988899999985 37899999999984
No 10
>2ei9_A Non-LTR retrotransposon R1BMKS ORF2 protein; four layered alpha beta sandwich, gene regulation; 2.00A {Bombyx mori}
Probab=99.89 E-value=4e-23 Score=170.62 Aligned_cols=164 Identities=12% Similarity=0.026 Sum_probs=107.8
Q ss_pred EEEEEeecccCeeeeccCCCCCCCCCCCCEEEEEECCEEEEEEEecCCCCCCccchHHHHHHHHHHHHHHHHhcCCCCEE
Q 026782 5 ICLFYVCLCNNSSVFHFLLSALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSGKPLI 84 (233)
Q Consensus 5 ~~~i~sr~~~~~~~~~~~~~~~~~d~~gR~i~~~~~~~~l~nvy~P~~~~~~~~~~~~~r~~~~~~l~~~l~~~~~~~vI 84 (233)
||||+++.+...+.. ++. ..+..++++.++++.++|+|+|+|++... +++.++++.|...+ .+.++|
T Consensus 57 gvail~~~~~~~~~~-~~~---~~~~~~~~i~i~~~~i~i~svY~P~~~~~------~~~~~~l~~l~~~~---~~~~~I 123 (240)
T 2ei9_A 57 KAGVYIRNRVLPCAV-LHH---LSSTHITVVHIGGWDLYMVSAYFQYSDPI------DPYLHRLGNILDRL---RGARVV 123 (240)
T ss_dssp SEEEEESSTTSCEEE-CGG---GCCSSEEEEEETTTTEEEEEEECCTTSCS------HHHHHHHHHHHHHT---TTSCEE
T ss_pred CEEEEEecCCcceee-ecc---cCCCCEEEEEEeeccEEEEEEEcCCCCch------hHHHHHHHHHHHhc---CCCcEE
Confidence 789999875443332 111 12345667777778999999999998742 23666676665443 347999
Q ss_pred EEcCCCccCCCCcCCChhhhhhhhcCCCCCCCCCCCCCCCCCHHHHHHHHHHHhcCCeeEeee--ccCCCCCCCCceecc
Q 026782 85 WCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYR--FLHKEKDMDCGFSWS 162 (233)
Q Consensus 85 i~GDFN~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~er~~~~~l~~~~~l~D~~r--~~~p~~~~~~~~T~~ 162 (233)
||||||+.+..+ ++... ..++.+.||+...+.+. ++.|.+| ..+|.. ..|||+
T Consensus 124 i~GDfN~~~~~w---~~~~~-----------------~~~~~~~~r~~~~~~l~--~~~d~~~l~~~~~~~---~~~T~~ 178 (240)
T 2ei9_A 124 ICADTNAHSPLW---HSLPR-----------------HYVGRGQEVADRRAKME--DFIGARRLVVHNADG---HLPTFS 178 (240)
T ss_dssp EEEECCCCCGGG---TCCHH-----------------HHSSSCHHHHHHHHHHH--HHHHHTTCEECCCTT---CCCSEE
T ss_pred EEEecccccccc---cCCCC-----------------CCCCcchhhHHHHHHHH--HHHHhcCCEecCCCC---CCceEe
Confidence 999999987432 21110 01344555544444443 3788877 346643 369999
Q ss_pred CCCCCCcCCCcceeeEEEeChhhhhceeeEEEecCCcCCCCCCCCCcCceEEEEeccCC
Q 026782 163 GNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELSEASS 221 (233)
Q Consensus 163 ~~~~~~~~~~~~RID~i~vs~~l~~~v~~~~i~~~~~~~~~~~~SDH~PV~~~l~~~~~ 221 (233)
++. .++||||+|+|+.+.. .++.|.. ..+|||+||+++|+....
T Consensus 179 s~~------~~~rID~~l~s~~l~~--~~~~i~~-------~~~SDH~Pv~~~l~~~~~ 222 (240)
T 2ei9_A 179 TAN------GESYVDVTLSTRGVRV--SEWRVTN-------ESSSDHRLIVFGVGGGTT 222 (240)
T ss_dssp ETT------EEECCEEEEECTTCCE--EEEEECS-------CCSSSBCCEEEEEEC---
T ss_pred CCC------CceEEEEEEecCcccc--CCeEECC-------CCCCCcccEEEEECCCCC
Confidence 853 2689999999999875 6677752 478999999999977653
No 11
>1wdu_A TRAS1 ORF2P; four-layered alpha/beta sandwich, RNA binding protein; 2.40A {Bombyx mori} SCOP: d.151.1.1
Probab=99.86 E-value=5.1e-21 Score=157.49 Aligned_cols=161 Identities=16% Similarity=0.119 Sum_probs=101.2
Q ss_pred eEEEEEeecccCeeeeccCCCCCCCCCCCC-EEEEEEC--CEEEEEEEecCCCCCCccchHHHHHHHHHHHHHHHHhcCC
Q 026782 4 FICLFYVCLCNNSSVFHFLLSALKYEPDGR-VILAEFE--TFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG 80 (233)
Q Consensus 4 ~~~~i~sr~~~~~~~~~~~~~~~~~d~~gR-~i~~~~~--~~~l~nvy~P~~~~~~~~~~~~~r~~~~~~l~~~l~~~~~ 80 (233)
-|||||+|.+...+. .++. .+.+|. ++.++.+ .+.|+|+|+|+... +..|++.|..+++....
T Consensus 81 ~GvaIl~~~~~~~~~-~~~~----~~~~~~~~~~i~~~~~~~~v~~vy~p~~~~---------~~~~~~~l~~~~~~~~~ 146 (245)
T 1wdu_A 81 VKAAIAVFDHDLDVI-QYPQ----LTTNNIVVVGIRTRAWEITLVSYYFEPDKP---------IESYLEQIKRVERKMGP 146 (245)
T ss_dssp CCEEEEECCSSCEEE-ECTT----TCCSSEEEEEEECSSCEEEEEEEECCTTSC---------SHHHHHHHHHHHHTTCS
T ss_pred CCeEEEEECCCcceE-Eecc----cccCCEEEEEEEcCCCcEEEEEEEeCCCCC---------HHHHHHHHHHHHHHhCC
Confidence 389999965433332 2321 222333 2333333 79999999998763 12345556665654445
Q ss_pred CCEEEEcCCCccCCCCcCCChhhhhhhhcCCCCCCCCCCCCCCCCCHHHHHHHHHHHhcCCeeEeeeccCCCCCCCCcee
Q 026782 81 KPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFS 160 (233)
Q Consensus 81 ~~vIi~GDFN~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~er~~~~~l~~~~~l~D~~r~~~p~~~~~~~~T 160 (233)
.++|||||||+.+..++.. ....+++.+..++...+|. ..++. ..||
T Consensus 147 ~~~Ii~GDfN~~~~~~~~~-------------------------~~~~~~~~l~~~~~~~~l~----~~~~~----~~~T 193 (245)
T 1wdu_A 147 KRLIFGGDANAKSTWWGSK-------------------------EDDARGDQLMGTLGELGLH----ILNEG----DVPT 193 (245)
T ss_dssp SSEEEEEECCCCCGGGTCS-------------------------SCCHHHHHHHHHHHHHTCE----ECCCS----CCCS
T ss_pred CcEEEEeccccCcccCCCC-------------------------CcCcchHHHHHHHHHCCcE----EecCC----CCCc
Confidence 7999999999976432210 0123445566666544453 34443 3589
Q ss_pred ccCCCCCCcCCCcceeeEEEeChhhhhceeeEEEecCCcCCCCCCCCCcCceEEEEecc
Q 026782 161 WSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELSEA 219 (233)
Q Consensus 161 ~~~~~~~~~~~~~~RID~i~vs~~l~~~v~~~~i~~~~~~~~~~~~SDH~PV~~~l~~~ 219 (233)
|+++.++ .+.++||||||+|+.+...+.++.|... ..+|||+||+++|++.
T Consensus 194 ~~~~~~~--~~~~~rID~i~~s~~~~~~v~~~~v~~~------~~~SDH~Pv~~~l~l~ 244 (245)
T 1wdu_A 194 FDTIRGG--KRYQSRVDVTFCTEDMLDLIDGWRVDED------LVSSDHNGMVFNIRLQ 244 (245)
T ss_dssp EEC-------CCEECCEEEEECGGGBTTEEEEEECTT------SSSSSBCCEEEEECCC
T ss_pred EECCCCC--CCCCCEEEEEEeChHHHhhccceEEcCC------CCCCCcccEEEEEEeC
Confidence 9876432 1346999999999999888899999752 5789999999999764
No 12
>3teb_A Endonuclease/exonuclease/phosphatase; PSI-biology, MCSG, midwest center for structural genomics; 2.99A {Leptotrichia buccalis c-1013-b}
Probab=99.86 E-value=4.4e-21 Score=158.67 Aligned_cols=167 Identities=16% Similarity=0.125 Sum_probs=108.4
Q ss_pred eEEEEEeecccCeee-eccCCCCCCCCCC-CCEEEEEEC----CEEEEEEEecCCCCCCccchHHHHHHHHHHHHHHHHh
Q 026782 4 FICLFYVCLCNNSSV-FHFLLSALKYEPD-GRVILAEFE----TFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQ 77 (233)
Q Consensus 4 ~~~~i~sr~~~~~~~-~~~~~~~~~~d~~-gR~i~~~~~----~~~l~nvy~P~~~~~~~~~~~~~r~~~~~~l~~~l~~ 77 (233)
.|+||+||+|+.... +.++........+ .+++.+++. .+.++|+|+++.....+ .|...++.|.++++.
T Consensus 93 ~g~ailsr~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~v~~~Hl~~~~~~~~-----~r~~q~~~l~~~~~~ 167 (266)
T 3teb_A 93 EGVAVITRHKIKAEDEFYCTFAQSVRTISARRIVSITINYEGQDIEFYSCHMNLPNCETE-----DMGKNIQTILNRTQN 167 (266)
T ss_dssp EEEEEEESSCCSEEEEEECSSCCCTTCTTCCEEEEEEEEETTEEEEEEEEECCCTTCTTC-----CHHHHHHHHHTSSCS
T ss_pred CeEEEEECceecCceeEEeCCCCCCCCcccceEEEEEEEeCCeEEEEEEecCCCccCChH-----HHHHHHHHHHHHHhc
Confidence 499999999986654 4454321111122 346666663 79999999988743211 144555566555543
Q ss_pred cCCCCEEEEcCCCccCCCCcCCChhhhhhhhcCCCCCCCCCCCCCCCCCHHHHHHHHHHHhcCCeeEeeeccCCCCCCCC
Q 026782 78 CSGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDC 157 (233)
Q Consensus 78 ~~~~~vIi~GDFN~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~er~~~~~l~~~~~l~D~~r~~~p~~~~~~ 157 (233)
+.++|||||||+.+... ...++.+++.+ |.|+|+..++.. .
T Consensus 168 --~~~~il~GDfN~~~~~~---------------------------------~~~~~~l~~~~-l~d~~~~~~~~~---~ 208 (266)
T 3teb_A 168 --SNLKILMGDFNTDAIGN---------------------------------VAAYENILSQG-LFDTYVMAEKKD---D 208 (266)
T ss_dssp --CCEEEEEEECCCCTTTC---------------------------------HHHHHHHHTTT-CEEHHHHCSEEC---C
T ss_pred --CCcEEEEeECCCCCCCC---------------------------------CcHHHhhcccc-ccchHHhhcccc---C
Confidence 67999999999975210 12345555555 999999888764 3
Q ss_pred ceeccCCCCCCc-CCCcceeeEEEeChhhhhceeeEEEecCCcCCCCCCCCCcCceEEEEec
Q 026782 158 GFSWSGNPIGKY-RGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELSE 218 (233)
Q Consensus 158 ~~T~~~~~~~~~-~~~~~RID~i~vs~~l~~~v~~~~i~~~~~~~~~~~~SDH~PV~~~l~~ 218 (233)
.+||....++.. ...+.||||||+++.+. +..+.+..... .....|||+||+++|++
T Consensus 209 ~~t~~~~~~~~~~~~~~~riD~i~~s~~~~--~~~~~v~~~~~--~~~~~SDH~Pv~~~l~l 266 (266)
T 3teb_A 209 GITVDKSIHGWDNDKAKKRLDYIFSNKELK--VKESKVIFNNK--NKEIVSDHFGIEVKIEF 266 (266)
T ss_dssp CCCEECC------CTTEECCEEEEESSCCC--EEEEEEESSSS--SSCCCSSSCEEEEEECC
T ss_pred CccccCccCCcCcCCcCCeeEEEEeCCCeE--EEEEEEEeCCC--CCCCcCCccCEEEEEEC
Confidence 577743222111 13468999999999876 78888886432 12477999999999864
No 13
>4gew_A 5'-tyrosyl-DNA phosphodiesterase; 5'-phosphotyrosyl-DNA diesterase, hydrolase; 2.35A {Caenorhabditis elegans} PDB: 4f1i_A
Probab=99.80 E-value=4.2e-19 Score=154.81 Aligned_cols=163 Identities=20% Similarity=0.225 Sum_probs=100.2
Q ss_pred eEEEEEeecccCeeeec-cCCCCCCCCCCCC-EEEEEE--C--CEEEEEEEecCCCCCCccchHHHHHHHHHHHHHHHH-
Q 026782 4 FICLFYVCLCNNSSVFH-FLLSALKYEPDGR-VILAEF--E--TFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVL- 76 (233)
Q Consensus 4 ~~~~i~sr~~~~~~~~~-~~~~~~~~d~~gR-~i~~~~--~--~~~l~nvy~P~~~~~~~~~~~~~r~~~~~~l~~~l~- 76 (233)
.|+|||||.|+...... ++. .....+| ++.+++ . .|.|+|+|+++.... .+.|...+..+..++.
T Consensus 185 ~G~aIlsk~~i~~~~~~~~~~---~~~~~~r~~l~~~i~~~g~~l~v~ntHL~s~~~~-----~~~R~~Q~~~l~~~~~~ 256 (362)
T 4gew_A 185 YYTAILVSKMFDVEKHDVIHF---QNSGMYRTLQILEGSIGGLKVFLLNTHLESTREH-----RPQRCAQFGFCMDKVRE 256 (362)
T ss_dssp SEEEEEEETTEEEEEEEEEEC---TTCSSCCEEEEEEEEETTEEEEEEEEECCCSGGG-----HHHHHHHHHHHHHHHHH
T ss_pred ceEEEEEeccCccccccccCC---CCCcccceEEEEEEEECCEEEEEEEecCCccccc-----hhHHHHHHHHHHHHhHh
Confidence 48999999887654433 221 1112344 444544 3 699999999987632 1224444444443332
Q ss_pred ---hcCCCCEEEEcCCCccCCCCcCCChhhhhhhhcCCCCCCCCCCCCCCCCCHHHHHHHHHHHhcCCeeEeeeccCCCC
Q 026782 77 ---QCSGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEK 153 (233)
Q Consensus 77 ---~~~~~~vIi~GDFN~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~er~~~~~l~~~~~l~D~~r~~~p~~ 153 (233)
...+.++|+|||||..+...+. .. .+|.|+|+..++..
T Consensus 257 ~~~~~~~~pvIl~GDFN~~p~~~~~--------------------------------------~~-~gl~Da~~~~~~~~ 297 (362)
T 4gew_A 257 IIAQNPGALVFFGGDLNLRDEEVSR--------------------------------------VP-DGVKDAWEAAGSDN 297 (362)
T ss_dssp HHHHCTTCEEEEEEECCCCGGGCCC--------------------------------------CC-TTCEEHHHHTTCCG
T ss_pred hhhcCCCCCeEEeecCCCCCcccch--------------------------------------hc-chHHHHHHHhCCCC
Confidence 2356799999999986543211 11 24999999887654
Q ss_pred CCCCceeccCCCCCCc---CCCcceeeEEEeChhhhhceeeEEEecCC-cCCCCCCCCCcCceEEEEe
Q 026782 154 DMDCGFSWSGNPIGKY---RGKRMRIDYFIVSEELKDRIIACEMQGHG-IELEGFYGSDHCPVSLELS 217 (233)
Q Consensus 154 ~~~~~~T~~~~~~~~~---~~~~~RID~i~vs~~l~~~v~~~~i~~~~-~~~~~~~~SDH~PV~~~l~ 217 (233)
. ..|||+...+... ...+.||||||+++.+. +.++.+.... ....+..+|||+||+++|.
T Consensus 298 ~--~~~Tw~~~~n~~~~~~~~~~~RIDyIf~s~~l~--~~~~~vi~~~ri~~~~~~pSDH~pV~A~FS 361 (362)
T 4gew_A 298 K--TKFTWDTFKNDNKQGFHGAKMRFDRLYWSGPLD--KVKFTLEGRQRIRSCLCFPSDHWAINATFF 361 (362)
T ss_dssp G--GCCSEETTTCTTSCCSSCCEECCEEEEEESSCC--EEEEEEECCSCCTTTSSCSCSSCEEEEEEE
T ss_pred C--CCcCcccccCcccccCCCCCcceEEEEEcCCcc--eeEEEEEeeeecCCCCCCCCcccCEEEEEc
Confidence 3 4789976543321 22357999999999875 4555554311 0001246799999999985
No 14
>3l1w_A Uncharacterized protein; APC29019.2, conserved protein, enterococcus faecalis V583, PSI-2, MCSG, structural genomics; 1.60A {Enterococcus faecalis}
Probab=99.80 E-value=6.5e-19 Score=145.40 Aligned_cols=165 Identities=16% Similarity=0.150 Sum_probs=103.7
Q ss_pred eEEEEEee---cccCeee-eccCCCCCC-----CCCCCCE-EEEEE------CCEEEEEEEecCCCCCCccchHHHHHHH
Q 026782 4 FICLFYVC---LCNNSSV-FHFLLSALK-----YEPDGRV-ILAEF------ETFYLLNTYAPNNGWKEEENSFQRRRKW 67 (233)
Q Consensus 4 ~~~~i~sr---~~~~~~~-~~~~~~~~~-----~d~~gR~-i~~~~------~~~~l~nvy~P~~~~~~~~~~~~~r~~~ 67 (233)
.|+||+|| +|+.... +.++..... ...+.|. +.+++ ..+.++|+|+++.+. ..|...
T Consensus 72 ~g~ail~r~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~r~~~~~~~~~~~~g~~~~v~~~Hl~~~~~-------~~r~~q 144 (257)
T 3l1w_A 72 EGLAILYNEQKVQAIDTGYFWLSETPQQPSIHPEAGCPRIALWGLFKETTQNTPFLVINVHLDHISA-------HARLAG 144 (257)
T ss_dssp CEEEEEECTTTEEEEEEEEEESSSSTTSSCCCTTCSSCCEEEEEEEEETTCSSCEEEEEEECCSSCH-------HHHHHH
T ss_pred ceEEEEEEcceEEEEecCeEECcCCCCcccccccccccceeEEEEEEEcCCCCEEEEEEeCCCCCCH-------HHHHHH
Confidence 48999998 6665433 333311100 1134663 44544 269999999987642 236666
Q ss_pred HHHHHHHHHh-cCCCCEEEEcCCCccCCCCcCCChhhhhhhhcCCCCCCCCCCCCCCCCCHHHHHHHHHHHhcCCeeEee
Q 026782 68 DKRIQEFVLQ-CSGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 146 (233)
Q Consensus 68 ~~~l~~~l~~-~~~~~vIi~GDFN~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~er~~~~~l~~~~~l~D~~ 146 (233)
+..|.++++. ....|+|||||||+.+.. ..++ ++..+ |.|+|
T Consensus 145 ~~~l~~~i~~~~~~~pvil~GDfN~~~~~-----------------------------------~~~~-~l~~~-l~d~~ 187 (257)
T 3l1w_A 145 MTVILEELHDKIAQYPTLLMGDFNAESGE-----------------------------------EVHQ-LVQKK-FQDSK 187 (257)
T ss_dssp HHHHHHHTHHHHHHSCEEEEEECCCCTTS-----------------------------------HHHH-HHTTT-CEEGG
T ss_pred HHHHHHHHHHHcCCCCEEEEeeCCCCCCc-----------------------------------HHHH-Hhhhh-ccchh
Confidence 6677777662 222399999999986532 0122 34444 99999
Q ss_pred eccCCCCCCCCceeccCCCCCCcCCCcceeeEEEeChhhhhceeeEEEecCCcCCCCCCCCCcCceEEEEeccC
Q 026782 147 RFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELSEAS 220 (233)
Q Consensus 147 r~~~p~~~~~~~~T~~~~~~~~~~~~~~RID~i~vs~~l~~~v~~~~i~~~~~~~~~~~~SDH~PV~~~l~~~~ 220 (233)
+..++.. ..+||+........+.+.||||||+ +.+. +.++.+..... .....|||+||+++|.+..
T Consensus 188 ~~~~~~~---~~~t~~~~~~~~~~~~~~riD~i~~-~~~~--~~~~~v~~~~~--~~~~~SDH~pv~~~l~~~~ 253 (257)
T 3l1w_A 188 NLATHYG---PRGTFQNFTYTKPWAELEEIDYIYV-KGWQ--VQQTASLTDSI--DGRFPSDHFPLEAEVAGEN 253 (257)
T ss_dssp GTSEEES---CSCCBCTTCTTCCGGGCBCCEEEEE-ESEE--EEEEEECCCCB--TTBCSSSBCCEEEEEEEC-
T ss_pred hhhcccC---CCCcccCCcccCCCCCCCceeEEEE-CCcE--EEEEEEeccCc--CCcccCCcceEEEEEEEEe
Confidence 8876543 3578876532222234589999999 6653 77888876321 1247899999999998764
No 15
>4fva_A 5'-tyrosyl-DNA phosphodiesterase; 5'-phosphotyrosyl-DNA diesterase, hydrolase; HET: EDO; 2.07A {Caenorhabditis elegans}
Probab=99.78 E-value=1.9e-18 Score=141.33 Aligned_cols=163 Identities=19% Similarity=0.240 Sum_probs=96.1
Q ss_pred eEEEEEeecccCeeeec-cCCCCCCCCCCCC-EEEEEE--C--CEEEEEEEecCCCCCCccchHHHHHHHHHHHHH----
Q 026782 4 FICLFYVCLCNNSSVFH-FLLSALKYEPDGR-VILAEF--E--TFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQE---- 73 (233)
Q Consensus 4 ~~~~i~sr~~~~~~~~~-~~~~~~~~d~~gR-~i~~~~--~--~~~l~nvy~P~~~~~~~~~~~~~r~~~~~~l~~---- 73 (233)
.|++|++|.++...... ++.. ....++ ++.+++ . .+.|+|+|+++..... ..+...+..+..
T Consensus 79 ~g~~il~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~g~~~~v~~~Hl~~~~~~~-----~~~~~q~~~~~~~~~~ 150 (256)
T 4fva_A 79 YYTAILVSKMFDVEKHDVIHFQ---NSGMYRTLQILEGSIGGLKVFLLNTHLESTREHR-----PQRCAQFGFCMDKVRE 150 (256)
T ss_dssp SEEEEEEETTCEEEEEEEEECT---TCSSCCEEEEEEEEETTEEEEEEEEECCCSGGGH-----HHHHHHHHHHHHHHHH
T ss_pred cceEEEEeecccceecccccCC---CCcccceeEEEEEEeCCeEEEEEEecCCCCCcch-----HHHHHHHHHHHHHhhh
Confidence 48999999876544332 2211 112333 444444 3 6999999998865321 112222222222
Q ss_pred HHHhcCCCCEEEEcCCCccCCCCcCCChhhhhhhhcCCCCCCCCCCCCCCCCCHHHHHHHHHHHhcCCeeEeeeccCCCC
Q 026782 74 FVLQCSGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEK 153 (233)
Q Consensus 74 ~l~~~~~~~vIi~GDFN~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~er~~~~~l~~~~~l~D~~r~~~p~~ 153 (233)
..+...+.++|+|||||+.+..... . ..++.|+|+..++..
T Consensus 151 ~~~~~~~~~vIl~GDfN~~~~~~~~--------------------------------------~-~~~~~d~~~~~~~~~ 191 (256)
T 4fva_A 151 IIAQNPGALVFFGGDLNLRDEEVSR--------------------------------------V-PDGVKDAWEAAGSDN 191 (256)
T ss_dssp HHHHSTTCEEEEEEECCCCGGGCCC--------------------------------------C-CTTCEEHHHHTTCCG
T ss_pred hhhccCCCcEEEeccCCCCcchhhh--------------------------------------h-hcchhhHHHHhCCCC
Confidence 2333467899999999986532111 0 123999999887654
Q ss_pred CCCCceeccCCCCCCc---CCCcceeeEEEeChhhhhceeeEEEecCC-cCCCCCCCCCcCceEEEEe
Q 026782 154 DMDCGFSWSGNPIGKY---RGKRMRIDYFIVSEELKDRIIACEMQGHG-IELEGFYGSDHCPVSLELS 217 (233)
Q Consensus 154 ~~~~~~T~~~~~~~~~---~~~~~RID~i~vs~~l~~~v~~~~i~~~~-~~~~~~~~SDH~PV~~~l~ 217 (233)
. ..|||....+... .....||||||+++.+. +.++++.... .......+|||+||+++|.
T Consensus 192 ~--~~~T~~~~~~~~~~~~~~~~~RiD~I~~~~~~~--~~~~~~~~~~~~~~~~~~~SDH~pv~a~Fs 255 (256)
T 4fva_A 192 K--TKFTWDTFKNDNKQGFHGAKMRFDRLYWSGPLD--KVKFTLEGRQRIRSCLCFPSDHWAINATFF 255 (256)
T ss_dssp G--GCCSEETTTCCSSCSCCSCEECCEEEEEESSCC--EEEEEEECCSCCTTTCSCSCSSCEEEEEEE
T ss_pred C--CCcccccccCcccccCCCCCcCeEEEEEcCCce--eeEEEEEeeEecCCCCCCcCcccCEEEEEc
Confidence 3 4689876543221 12357999999998875 4556654311 1001245799999999985
No 16
>3g6s_A Putative endonuclease/exonuclease/phosphatase family protein; alpha-beta protein, structural genomics, PSI-2; 2.50A {Bacteroides vulgatus atcc 8482}
Probab=99.78 E-value=1.1e-18 Score=145.00 Aligned_cols=166 Identities=19% Similarity=0.230 Sum_probs=106.1
Q ss_pred EEEE---eecccCeeee-ccCCCCC-----CCC-CCCC-EEEEEEC------CEEEEEEEecCCCCCCccchHHHHHHHH
Q 026782 6 CLFY---VCLCNNSSVF-HFLLSAL-----KYE-PDGR-VILAEFE------TFYLLNTYAPNNGWKEEENSFQRRRKWD 68 (233)
Q Consensus 6 ~~i~---sr~~~~~~~~-~~~~~~~-----~~d-~~gR-~i~~~~~------~~~l~nvy~P~~~~~~~~~~~~~r~~~~ 68 (233)
+||+ ||+|+..... .++.... .++ ...| ++.+.+. .+.|+|+|+++.+. ..|.+.+
T Consensus 79 ~ail~~~s~~~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~~~~~v~~~Hl~~~~~-------~~R~~q~ 151 (267)
T 3g6s_A 79 APLFYRKDKYEVLDSNTFWLAENPDSVGMMGWDAVCVRIATWAKFKDKATGKIFMAVNTHFDHVGE-------EARRQSA 151 (267)
T ss_dssp CCEEEETTTEEEEEEEEEESSSCTTSTTCCCTTCSSCCEEEEEEEEETTTCCEEEEEEEECCSSCH-------HHHHHHH
T ss_pred eEEEEEccceEEEecccEecCCCCCccccccccccCcceEEEEEEEEcCCCCEEEEEEeCCCCCCH-------HHHHHHH
Confidence 8888 8898876543 3432110 011 2456 4444442 69999999987652 2366666
Q ss_pred HHHHHHHHhc-CCCCEEEEcCCCccCCCCcCCChhhhhhhhcCCCCCCCCCCCCCCCCCHHHHHHHHHHHhcC-CeeEee
Q 026782 69 KRIQEFVLQC-SGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEG-RLIDAY 146 (233)
Q Consensus 69 ~~l~~~l~~~-~~~~vIi~GDFN~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~er~~~~~l~~~~-~l~D~~ 146 (233)
+.|.++++.. .+.++|||||||+.+.+ ..++.+.+.+ +|.|+|
T Consensus 152 ~~l~~~l~~~~~~~pvIl~GDfN~~~~~-----------------------------------~~~~~l~~~~~~l~d~~ 196 (267)
T 3g6s_A 152 LLIIRKIKEIVGERPAVVTGDFNVTDAS-----------------------------------DAYETITTNEFVMKDAY 196 (267)
T ss_dssp HHHHHHHHHHTTTSCEEEEEECSSCTTS-----------------------------------HHHHHHHSSSSCCEEHH
T ss_pred HHHHHHHHHhcCCCCEEEEeECCCCCCC-----------------------------------HHHHHhhcCCcchhhhH
Confidence 7777777654 36799999999986532 1233444433 499999
Q ss_pred eccCCCCCCCCceeccCCCCCCcCCCcceeeEEEeChhhhhceeeEEEecCCcCCCCCCCCCcCceEEEEeccCC
Q 026782 147 RFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELSEASS 221 (233)
Q Consensus 147 r~~~p~~~~~~~~T~~~~~~~~~~~~~~RID~i~vs~~l~~~v~~~~i~~~~~~~~~~~~SDH~PV~~~l~~~~~ 221 (233)
+...+... ..+||+...... .+.+.||||||+++.+. +.++.+..... .. ..|||+||++++..-..
T Consensus 197 ~~~~~~~~--~~~T~~~~~~~~-~~~~~riD~I~~s~~~~--~~~~~v~~~~~--~~-~~SDH~PV~a~~~~~~~ 263 (267)
T 3g6s_A 197 KTAARVTG--VDYTFHDFARIP-AEDCEKIDFIFVTPQVL--VKSCEIPAEVP--EA-LLSDHNPQLADLELEHH 263 (267)
T ss_dssp HHCSEEEE--CSCSBCTTTTSC-GGGCCCCEEEEECTTSE--EEEEEECCCCS--SS-CCCSBCCEEEEEEEC--
T ss_pred hhhccccC--CCCCEeCCCCCC-CCCCCcEeEEEeCCCce--EEEEEEecCCC--CC-CCCCcccEEEEEEeccc
Confidence 88764221 357887653210 12458999999999864 77888876421 12 57999999999986543
No 17
>3mpr_A Putative endonuclease/exonuclease/phosphatase FAM protein; structural genomics, PSI-2, protein structure initiative; HET: MSE PEG; 1.90A {Bacteroides thetaiotaomicron}
Probab=99.75 E-value=6.7e-18 Score=142.90 Aligned_cols=166 Identities=19% Similarity=0.168 Sum_probs=105.0
Q ss_pred EEEE---eecccCeeee-ccCCCCCC----CC-CCCC-EEEEEEC------CEEEEEEEecCCCCCCccchHHHHHHHHH
Q 026782 6 CLFY---VCLCNNSSVF-HFLLSALK----YE-PDGR-VILAEFE------TFYLLNTYAPNNGWKEEENSFQRRRKWDK 69 (233)
Q Consensus 6 ~~i~---sr~~~~~~~~-~~~~~~~~----~d-~~gR-~i~~~~~------~~~l~nvy~P~~~~~~~~~~~~~r~~~~~ 69 (233)
+||+ ||+|+..... .++..... ++ ...| ++.+.+. .+.|+|+|+++.+. ..|.+.++
T Consensus 84 ~aily~~sr~~i~~~~~~~l~~~p~~~~~~~~~~~~R~~~~~~~~~~~~g~~~~v~~~Hl~~~~~-------~~R~~q~~ 156 (298)
T 3mpr_A 84 SAIFYRTDKFDIVEKGDFWLSETPDVPSKGWDAVLPRICSWGHFKCKDTGFEFLFFNLHMDHIGK-------KARVESAF 156 (298)
T ss_dssp CCEEEETTTEEEEEEEEEESSSSTTSSCCCTTCSSCCEEEEEEEEETTTCCEEEEEEEECCSSCH-------HHHHHHHH
T ss_pred eEEEEecCceEEEeccEEEccCCCCccCcccccccCceeEEEEEEEcCCCCEEEEEEecCCCCCH-------HHHHHHHH
Confidence 8898 9999876543 34311100 01 1346 4445542 69999999986542 23666677
Q ss_pred HHHHHHHhc---CCCCEEEEcCCCccCCCCcCCChhhhhhhhcCCCCCCCCCCCCCCCCCHHHHHHHHHHHhcCCeeEee
Q 026782 70 RIQEFVLQC---SGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAY 146 (233)
Q Consensus 70 ~l~~~l~~~---~~~~vIi~GDFN~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~er~~~~~l~~~~~l~D~~ 146 (233)
.|.++++.. .+.++|||||||+.+.. ..++.+.+.++|.|+|
T Consensus 157 ~l~~~i~~~~~~~~~pvIl~GDfN~~~~~-----------------------------------~~~~~l~~~g~l~D~~ 201 (298)
T 3mpr_A 157 LVQEKMKELGRGKNLPAILTGDFNVDQTH-----------------------------------QSYDAFVSKGVLCDSY 201 (298)
T ss_dssp HHHHHHHHTTTTSCCCEEEEEECSSCTTS-----------------------------------HHHHHHHTTSSSEEHH
T ss_pred HHHHHHHHHhcCCCCcEEEEEeCCCCCCC-----------------------------------HHHHHHhcCCcchhhH
Confidence 777777753 36799999999986532 1244555555699999
Q ss_pred eccCCCCCCCCceeccCCCCCCcCCCcceeeEEEeChhhhhceeeEEEecCCcC-------------CC---------CC
Q 026782 147 RFLHKEKDMDCGFSWSGNPIGKYRGKRMRIDYFIVSEELKDRIIACEMQGHGIE-------------LE---------GF 204 (233)
Q Consensus 147 r~~~p~~~~~~~~T~~~~~~~~~~~~~~RID~i~vs~~l~~~v~~~~i~~~~~~-------------~~---------~~ 204 (233)
+....... ..+||...... ...+.||||||+++.+. +.++.++..... .+ ..
T Consensus 202 ~~~~~~~~--~~~T~~~~~~~--~~~~~rID~Il~s~~~~--v~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (298)
T 3mpr_A 202 EKCDYRYA--LNGTFNNFDPN--SFTESRIDHIFVSPSFH--VKRYGVLTDTYRSVRENSKKEDVRDCPEEITIKAYEAR 275 (298)
T ss_dssp HHCSEEEC--SSCSBCTTCTT--CCCSCCCEEEEECTTSE--EEEEEECCCCEEEECC----------------CCEEEE
T ss_pred hhhcccCC--CCCCccCCCCC--CCCCceEEEEEeCCCee--EEEEEEecCccccCCCcccccCcccchhhhccChhhcc
Confidence 87654221 24787664321 12358999999999874 677777643110 00 01
Q ss_pred CCCCcCceEEEEecc
Q 026782 205 YGSDHCPVSLELSEA 219 (233)
Q Consensus 205 ~~SDH~PV~~~l~~~ 219 (233)
..|||+||++++...
T Consensus 276 ~~SDH~PV~v~~~~~ 290 (298)
T 3mpr_A 276 TPSDHFPVKVELVFD 290 (298)
T ss_dssp CSSSBCCEEEEEEEC
T ss_pred cCCCCCcEEEEEecc
Confidence 469999999998754
No 18
>4gz1_A Tyrosyl-DNA phosphodiesterase 2; protein-DNA complex, DNA repair, 5'-DNA END processing, endonuclease/exonuclease/phosphatase domain; HET: DNA EPE; 1.50A {Mus musculus} PDB: 4gyz_A* 4gz0_A* 4gz2_A*
Probab=99.75 E-value=9.8e-18 Score=136.92 Aligned_cols=136 Identities=20% Similarity=0.262 Sum_probs=82.2
Q ss_pred CEEEEEEEecCCCCCCccchHHHHHHHHHHHHHHHHhc-CCCCEEEEcCCCccCCCCcCCChhhhhhhhcCCCCCCCCCC
Q 026782 41 TFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKED 119 (233)
Q Consensus 41 ~~~l~nvy~P~~~~~~~~~~~~~r~~~~~~l~~~l~~~-~~~~vIi~GDFN~~~~~~D~~~~~~~~~~~~~~~~~~~~~~ 119 (233)
.+.++|+|+++.... .+.|.+.+..+.++++.. .+.++|+|||||+.+...+
T Consensus 115 ~~~v~~~Hl~~~~~~-----~~~~~~q~~~~~~~l~~~~~~~pvIl~GDfN~~~~~~~---------------------- 167 (256)
T 4gz1_A 115 EFCLMTSHLESTREH-----SAERIRQLKTVLGKMQEAPDSTTVIFAGDTNLRDQEVI---------------------- 167 (256)
T ss_dssp EEEEEECBCCCSGGG-----HHHHHHHHHHHHHHHHHSCTTSEEEEEEECCCCHHHHH----------------------
T ss_pred EEEEEeecccccccc-----hhhhhHHHHHHhhhhhhccCcceEEEeCccCCCcchhh----------------------
Confidence 699999999876532 123555566677777654 4679999999998543211
Q ss_pred CCCCCCCHHHHHHHHHHHhcCCeeEeeeccCCCCCCCCceeccCCCCC---CcCCCcceeeEEEeChhhhh-ceeeEEEe
Q 026782 120 WGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIG---KYRGKRMRIDYFIVSEELKD-RIIACEMQ 195 (233)
Q Consensus 120 ~~~~~~~~~er~~~~~l~~~~~l~D~~r~~~p~~~~~~~~T~~~~~~~---~~~~~~~RID~i~vs~~l~~-~v~~~~i~ 195 (233)
....... ++.|+|+..++... ..++|...... .....+.||||||+++.... ....+++.
T Consensus 168 -------------~~~~~~~-~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~riD~I~~~~~~~~~~~~~~~~~ 231 (256)
T 4gz1_A 168 -------------KCGGLPD-NVFDAWEFLGKPKH--CQYTWDTKANNNLRIPAAYKHRFDRIFFRAEEGHLIPQSLDLV 231 (256)
T ss_dssp -------------HHTCSCT-TEEEHHHHTTCCGG--GSCSEETTTCCTTCCSSCCEECCEEEEEECC-CSEEEEEEEEE
T ss_pred -------------hhhhccc-hhhhHHHHhcCCCC--CCcccccCCCCccccCCCCCccEEEEEEECCccceeeeEEEEE
Confidence 1112223 48999988765432 34555443211 11345689999999876432 23344444
Q ss_pred cCCcCCCCCCCCCcCceEEEEecc
Q 026782 196 GHGIELEGFYGSDHCPVSLELSEA 219 (233)
Q Consensus 196 ~~~~~~~~~~~SDH~PV~~~l~~~ 219 (233)
..........+|||+||+++|++-
T Consensus 232 ~~~~~~~~~~~SDH~pv~a~~~iv 255 (256)
T 4gz1_A 232 GLEKLDCGRFPSDHWGLLCTLNVV 255 (256)
T ss_dssp CCSCCTTSSCSCSBCEEEEEEEEC
T ss_pred eccccCCCCCCCccccEEEEEEEE
Confidence 311000124679999999999863
No 19
>1zwx_A SMCL, sphingomyelinase-C; dnase1-like fold, beta-hairpin, hydrolase; 1.90A {Listeria ivanovii} SCOP: d.151.1.3
Probab=99.75 E-value=5.9e-18 Score=142.75 Aligned_cols=91 Identities=13% Similarity=0.026 Sum_probs=59.6
Q ss_pred eEEEEEeecccCeeee-ccCCCCCCCCCCCC-EEEEEEC----CEEEEEEEecCCCCCCc-cchHHHHHHHHHHHHHHHH
Q 026782 4 FICLFYVCLCNNSSVF-HFLLSALKYEPDGR-VILAEFE----TFYLLNTYAPNNGWKEE-ENSFQRRRKWDKRIQEFVL 76 (233)
Q Consensus 4 ~~~~i~sr~~~~~~~~-~~~~~~~~~d~~gR-~i~~~~~----~~~l~nvy~P~~~~~~~-~~~~~~r~~~~~~l~~~l~ 76 (233)
.|||||||+|+..... .++........+.| ++.+++. .+.|+|+|+++...... ......|..+++.|.++++
T Consensus 101 ~G~ailSr~pi~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~g~~~~v~~~Hl~~~~~~~~~~~~~~~R~~q~~~l~~~i~ 180 (301)
T 1zwx_A 101 GGVAVVSQWPIVEKSQHIFQRGGGADRLSNKGFAYVKIMKNGKPYHIIGTHTQADDSLISKDTSRAIRAEQMQEIQTFIA 180 (301)
T ss_dssp CCCEEEESSCEEEEEEEECSCCCGGGGGBCCEEEEEEEEETTEEEEEEEEECCCCCTTSCHHHHHHHHHHHHHHHHHHHH
T ss_pred CCEEEEecCCcccceEEEecCCCCcccccCCCeEEEEEEECCEEEEEEEecCCCCCCCCCccccHHHHHHHHHHHHHHHH
Confidence 5899999999876543 35421000011234 6666663 69999999988753210 0133457777788888887
Q ss_pred hc---CCCCEEEEcCCCccCC
Q 026782 77 QC---SGKPLIWCGDLNVSHE 94 (233)
Q Consensus 77 ~~---~~~~vIi~GDFN~~~~ 94 (233)
.. .+.++|||||||+.+.
T Consensus 181 ~~~~~~~~pvIl~GDfN~~~~ 201 (301)
T 1zwx_A 181 KKNIPKDEIIFIGGDLNVNYG 201 (301)
T ss_dssp HHTCCTTSEEEEEEECCCCTT
T ss_pred HhCCCCCCeEEEEeeCCCCCC
Confidence 52 3579999999999764
No 20
>4f1h_A Tyrosyl-DNA phosphodiesterase 2; hydrolase-DNA complex; HET: DNA; 1.66A {Danio rerio} PDB: 4fpv_A* 4f1h_B*
Probab=99.72 E-value=3.7e-17 Score=131.90 Aligned_cols=134 Identities=19% Similarity=0.245 Sum_probs=81.2
Q ss_pred CEEEEEEEecCCCCCCccchHHHHHHHHHHHHHHHHhc-CCCCEEEEcCCCccCCCCcCCChhhhhhhhcCCCCCCCCCC
Q 026782 41 TFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKED 119 (233)
Q Consensus 41 ~~~l~nvy~P~~~~~~~~~~~~~r~~~~~~l~~~l~~~-~~~~vIi~GDFN~~~~~~D~~~~~~~~~~~~~~~~~~~~~~ 119 (233)
.+.++|+|+++.... .+.|...++.+.+++++. ...|+|+|||||+.+...+..
T Consensus 109 ~~~v~~~hl~~~~~~-----~~~r~~q~~~~~~~l~~~~~~~pvIl~GDfN~~~~~~~~~-------------------- 163 (250)
T 4f1h_A 109 KLYLMTSHLESCKNQ-----SQERTKQLRVVLQKIKEAPEDAIVIFAGDTNLRDAEVANV-------------------- 163 (250)
T ss_dssp EEEEEECBCCCSGGG-----HHHHHHHHHHHHHHHHHSCTTEEEEEEEECCCCHHHHHTT--------------------
T ss_pred EEEEecccccccccc-----HHHHHHHHHHHHHHHHhcCCCCCEEEEEecCCCCcchhhh--------------------
Confidence 699999999876532 223556667777777654 456899999999865432111
Q ss_pred CCCCCCCHHHHHHHHHHHhcCCeeEeeeccCCCCCCCCceeccCCCCC---CcCCCcceeeEEEeChhhhhc---eeeEE
Q 026782 120 WGQPGFTIAERKRFGAILKEGRLIDAYRFLHKEKDMDCGFSWSGNPIG---KYRGKRMRIDYFIVSEELKDR---IIACE 193 (233)
Q Consensus 120 ~~~~~~~~~er~~~~~l~~~~~l~D~~r~~~p~~~~~~~~T~~~~~~~---~~~~~~~RID~i~vs~~l~~~---v~~~~ 193 (233)
..... .+.|+|+..++... ..++|....+. .....+.||||||+++..... +....
T Consensus 164 ---------------~~~~~-~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~riD~I~~~~~~~~~~~~~~~~~ 225 (250)
T 4f1h_A 164 ---------------GGLPA-GVCDVWEQLGKQEH--CRYTWDTKANSNKTVPYVSRCRFDRIFLRSAKTAPPVTPDHMA 225 (250)
T ss_dssp ---------------TSSCT-TEEEHHHHTTCCGG--GCCSEETTTCCSSCCSSCCEECCEEEEEECCTTSCCCEEEEEE
T ss_pred ---------------hhccc-cchHHHHHhcCCcc--CCcccccccCCCCCcCCCCCccEEEEEEeCcccccceeeeEEE
Confidence 11122 38888888776543 24455432211 112346899999998876533 22333
Q ss_pred EecCCcCCCCCCCCCcCceEEEEe
Q 026782 194 MQGHGIELEGFYGSDHCPVSLELS 217 (233)
Q Consensus 194 i~~~~~~~~~~~~SDH~PV~~~l~ 217 (233)
+...........+|||+||+++|+
T Consensus 226 ~~~~~~~~~~~~~SDH~pv~a~f~ 249 (250)
T 4f1h_A 226 LIGMEKLDCGRYTSDHWGIYCTFN 249 (250)
T ss_dssp EECCSCCTTSSCSCSBCEEEEEEE
T ss_pred EecccccCCCCCCCcccCEEEEEe
Confidence 332110011246799999999986
No 21
>2ddr_A Sphingomyelin phosphodiesterase; DNAse I like folding, riken structural genomics/proteomics initiative, RSGI, structural genomics, hydrolase; 1.40A {Bacillus cereus} SCOP: d.151.1.3 PDB: 2dds_A 2ddt_A* 2uyr_X
Probab=99.72 E-value=5.4e-17 Score=137.03 Aligned_cols=179 Identities=13% Similarity=0.102 Sum_probs=98.3
Q ss_pred eEEEEEeecccCeeee-ccCCCCCCCC-CCCC-EEEEEEC----CEEEEEEEecCCCCCCc-cchHHHHHHHHHHHHHHH
Q 026782 4 FICLFYVCLCNNSSVF-HFLLSALKYE-PDGR-VILAEFE----TFYLLNTYAPNNGWKEE-ENSFQRRRKWDKRIQEFV 75 (233)
Q Consensus 4 ~~~~i~sr~~~~~~~~-~~~~~~~~~d-~~gR-~i~~~~~----~~~l~nvy~P~~~~~~~-~~~~~~r~~~~~~l~~~l 75 (233)
.|+|||||+|+..... .++... ..| .++| ++.+++. .+.|+|+|+++...... ......|..+++.|.+++
T Consensus 101 ~G~ailSr~pi~~~~~~~~~~~~-~~~~~~~r~~~~~~i~~~g~~~~v~~~Hl~~~~~~~~~~~~~~~R~~q~~~l~~~i 179 (306)
T 2ddr_A 101 GGVAIVSKWPIAEKIQYVFAKGC-GPDNLSNKGFVYTKIKKNDRFVHVIGTHLQAEDSMCGKTSPASVRTNQLKEIQDFI 179 (306)
T ss_dssp CCCEEEESSCEEEEEEEECSCCC-----CCCCEEEEEEEEETTEEEEEEEEECCCC-------CHHHHHHHHHHHHHHHH
T ss_pred CeEEEEECCCcccccEEEcCCCC-CcchhcCCCeEEEEEEeCCEEEEEEEECCCCCCCCcccccCHHHHHHHHHHHHHHH
Confidence 4899999999876543 344210 011 2455 5666663 69999999988742100 012345777788888888
Q ss_pred Hhc---CCCCEEEEcCCCccCCCCcCCChhhhhhhhcCCCCCCCCCCCCCCCCCHHHHHHHHHHHhcCCeeEeeeccCCC
Q 026782 76 LQC---SGKPLIWCGDLNVSHEEIDVSHPEFFAAAKLNGYVPPNKEDWGQPGFTIAERKRFGAILKEGRLIDAYRFLHKE 152 (233)
Q Consensus 76 ~~~---~~~~vIi~GDFN~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~er~~~~~l~~~~~l~D~~r~~~p~ 152 (233)
+.. .+.++|||||||+.+...|.... ..++.++...++.|. . +.
T Consensus 180 ~~~~~~~~~pvil~GDfN~~~~~~d~~~s-----------------------------~~~~~l~~~~~~~~~--~--~~ 226 (306)
T 2ddr_A 180 KNKNIPNNEYVLIGGDMNVNKINAENNND-----------------------------SEYASMFKTLNASVP--S--YT 226 (306)
T ss_dssp HHHTCCTTSCEEEEEECCCCCTTTSSCTT-----------------------------SHHHHHHHHHTBCCC--E--EE
T ss_pred HHhcCCCCCEEEEEeeCCCCcccccccCC-----------------------------HHHHHHHHhcCCCCc--c--cC
Confidence 753 35699999999998754442210 012333433235542 1 11
Q ss_pred CCCCCceeccCCCCC----Cc-CCCcceeeEEEeChhhhhce--ee---------EEEecCCcCCCCCCCCCcCceEEEE
Q 026782 153 KDMDCGFSWSGNPIG----KY-RGKRMRIDYFIVSEELKDRI--IA---------CEMQGHGIELEGFYGSDHCPVSLEL 216 (233)
Q Consensus 153 ~~~~~~~T~~~~~~~----~~-~~~~~RID~i~vs~~l~~~v--~~---------~~i~~~~~~~~~~~~SDH~PV~~~l 216 (233)
. ..+||....+. .+ ...+.||||||+++.+.... .. ..+...........+|||+||+++|
T Consensus 227 g---~~~T~~~~~n~~~~~t~~~~~~~rID~I~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~SDH~pv~a~l 303 (306)
T 2ddr_A 227 G---HTATWDATTNSIAKYNFPDSPAEYLDYIIASKDHANPSYIENKVLQPKSPQWTVTSWFQKYTYNDYSDHYPVEATI 303 (306)
T ss_dssp E---CSCSBCTTTCHHHHHHCTTSCCBCCEEEEEBTTSCCCSEEEEEECCCCCCCEEEEETTEEEEECCSCSSCCEEEEE
T ss_pred C---CCcccCCCCCccccccCCCCCcceeeEEEEeCCCCCcccccceeeccccccceeccccccccccCCCCCcceeEEE
Confidence 1 24777432110 01 12358999999999865321 01 1111000000013789999999999
Q ss_pred ecc
Q 026782 217 SEA 219 (233)
Q Consensus 217 ~~~ 219 (233)
.++
T Consensus 304 ~~~ 306 (306)
T 2ddr_A 304 SMK 306 (306)
T ss_dssp EC-
T ss_pred EeC
Confidence 763
No 22
>3i41_A Beta-hemolysin; beta toxin, sphingomyelinase, toxin; 1.75A {Staphylococcus aureus} PDB: 3i46_A 3i48_A 3i5v_A* 3k55_A
Probab=99.67 E-value=8e-16 Score=131.52 Aligned_cols=89 Identities=15% Similarity=0.169 Sum_probs=59.6
Q ss_pred EEEEEeecccCeeee-ccCCCCCCCC-CCCC-EEEEEEC----CEEEEEEEecCCCCCCc-cchHHHHHHHHHHHHHHHH
Q 026782 5 ICLFYVCLCNNSSVF-HFLLSALKYE-PDGR-VILAEFE----TFYLLNTYAPNNGWKEE-ENSFQRRRKWDKRIQEFVL 76 (233)
Q Consensus 5 ~~~i~sr~~~~~~~~-~~~~~~~~~d-~~gR-~i~~~~~----~~~l~nvy~P~~~~~~~-~~~~~~r~~~~~~l~~~l~ 76 (233)
|++||||+|+..... .++... ..| .++| ++.+++. .+.|+|+|+++...... ......|...+..|.++++
T Consensus 121 G~~ilSr~Pi~~~~~~~~~~~~-~~d~~~~r~~~~~~i~~~g~~v~v~~~Hl~~~~~~~~~~~~~~~R~~q~~~l~~~i~ 199 (317)
T 3i41_A 121 GVAIVSKYPIKEKIQHVFKSGC-GFDNDSNKGFVYTKIEKNGKNVHVIGTHTQSEDSRCGAGHDRKIRAEQMKEISDFVK 199 (317)
T ss_dssp CCEEEESSCEEEEEEEECSCCC-SSGGGBCCEEEEEEEEETTEEEEEEEEECCCCCSSSCTTHHHHHHHHHHHHHHHHHH
T ss_pred ccEEEeCCCCccceeEECCCCC-CcccccCcceEEEEEEECCEEEEEEEECCCCCCCCCcccccHHHHHHHHHHHHHHHH
Confidence 999999999976643 354211 111 2444 4555542 69999999987653100 1224457778888888887
Q ss_pred hc---CCCCEEEEcCCCccCC
Q 026782 77 QC---SGKPLIWCGDLNVSHE 94 (233)
Q Consensus 77 ~~---~~~~vIi~GDFN~~~~ 94 (233)
.. .+.++|||||||+.+.
T Consensus 200 ~~~~~~~~pvIl~GDfN~~~~ 220 (317)
T 3i41_A 200 KKNIPKDETVYIGGDLNVNKG 220 (317)
T ss_dssp HHTCCTTSCEEEEEECCCCTT
T ss_pred HhccCCCCeEEEEeECCCCCC
Confidence 63 4679999999999764
No 23
>2f1n_A CDT B, cytolethal distending toxin subunit B; E.coli, DNAse I, microbatch; 1.73A {Escherichia coli} SCOP: d.151.1.1
Probab=99.47 E-value=2.9e-13 Score=110.94 Aligned_cols=80 Identities=6% Similarity=-0.041 Sum_probs=58.7
Q ss_pred eEEEEEeecccCeeeeccCCCCCCCCCCCCEEEEEECCEEEEEEEecCCCCCCccchHHHHHHHHHHHHHHHHhcCC---
Q 026782 4 FICLFYVCLCNNSSVFHFLLSALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQCSG--- 80 (233)
Q Consensus 4 ~~~~i~sr~~~~~~~~~~~~~~~~~d~~gR~i~~~~~~~~l~nvy~P~~~~~~~~~~~~~r~~~~~~l~~~l~~~~~--- 80 (233)
+|+||+||+|..++.. +|.. ...+..++.++++..+++|+|+-..+..+ +.+..+.+.+++.+...
T Consensus 107 ~nlAIlSr~~adev~v-Lp~~---~~~~Rp~lgiri~~~~ff~tHa~a~~g~d-------a~a~v~~I~~~~~~~~~~~~ 175 (262)
T 2f1n_A 107 VNLALVSNRRADEVFV-LSPV---RQGGRPLLGIRIGNDAFFTAHAIAMRNND-------APALVEEVYNFFRDSRDPVH 175 (262)
T ss_dssp SCEEEEESSCCSEEEE-ECCS---STTCCCEEEEEETTEEEEEEECCSSSSCS-------HHHHHHHHHHHHHTCSSHHH
T ss_pred eeeEEEEcccccceEE-CCCC---CCCCCceEEEEECCEEEEEEEecCCCCcc-------HHHHHHHHHHHHhcCccccc
Confidence 5899999999986543 4421 11244489999999999999998775432 44557777788765434
Q ss_pred --CCEEEEcCCCccCC
Q 026782 81 --KPLIWCGDLNVSHE 94 (233)
Q Consensus 81 --~~vIi~GDFN~~~~ 94 (233)
.|+||+||||..+.
T Consensus 176 ~~~pwii~GDFNr~P~ 191 (262)
T 2f1n_A 176 QALNWMILGDFNREPA 191 (262)
T ss_dssp HTCEEEEEEECSSCHH
T ss_pred CCCcEEEEecCCCCCc
Confidence 59999999999764
No 24
>1sr4_B CDT B, cytolethal distending toxin protein B; bacterial, virulence, DNA damage, genotoxin, cytotoxins, cell cycle, apoptosis, lectin; 2.00A {Haemophilus ducreyi} SCOP: d.151.1.1 PDB: 2f2f_B
Probab=99.43 E-value=2.8e-12 Score=105.95 Aligned_cols=78 Identities=12% Similarity=-0.009 Sum_probs=53.5
Q ss_pred eEEEEEeecccCeeee-ccCCCCCCCCCCCC-EEEEEECCEEEEEEEecCCCCCCccchHHHHHHHHHHHHHHHHhc---
Q 026782 4 FICLFYVCLCNNSSVF-HFLLSALKYEPDGR-VILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC--- 78 (233)
Q Consensus 4 ~~~~i~sr~~~~~~~~-~~~~~~~~~d~~gR-~i~~~~~~~~l~nvy~P~~~~~~~~~~~~~r~~~~~~l~~~l~~~--- 78 (233)
+|+||+||+|..++.. ..+. ...+.| ++.++++.+.++++|+...+..+ +......|.+++...
T Consensus 96 ~g~AIlSR~~~~~v~~l~~~~----~~~~~R~~l~i~i~g~~f~s~Hl~~~~~~e-------a~~~v~~I~~~~~~~~~~ 164 (261)
T 1sr4_B 96 VNLAIVSRRQADEAFIVHSDS----SVLQSRPAVGIRIGTDVFFTVHALATGGSD-------AVSLIRNIFTTFNSSSSP 164 (261)
T ss_dssp SCEEEEESSCCSEEEEECCCC----CSSCCCCEEEEEETTEEEEEEECCTTTTTT-------HHHHHHHHHHHHHC---C
T ss_pred cceEEEEccchhceEEcCCCC----CCCcCcceEEEEECCeEEEEeCCCCCCCch-------HHHHHHHHHHHHHhcccC
Confidence 4899999998866432 2221 113555 88889999999999998775321 233355677776543
Q ss_pred CC---CCEEEEcCCCcc
Q 026782 79 SG---KPLIWCGDLNVS 92 (233)
Q Consensus 79 ~~---~~vIi~GDFN~~ 92 (233)
.+ .++|||||||..
T Consensus 165 ~~~~~~~~ii~GDFN~~ 181 (261)
T 1sr4_B 165 PERRVYSWMVVGDFNRA 181 (261)
T ss_dssp GGGGGCEEEEEEECSSC
T ss_pred CcccCCcEEEEeeCCCC
Confidence 34 699999999985
No 25
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.30 E-value=3e-13 Score=127.67 Aligned_cols=50 Identities=18% Similarity=0.130 Sum_probs=10.9
Q ss_pred cceeeEEEeChhhhhceeeEEEec-------CCcCCCCCCCCCcCceEEEEeccCCCc
Q 026782 173 RMRIDYFIVSEELKDRIIACEMQG-------HGIELEGFYGSDHCPVSLELSEASSDS 223 (233)
Q Consensus 173 ~~RID~i~vs~~l~~~v~~~~i~~-------~~~~~~~~~~SDH~PV~~~l~~~~~~~ 223 (233)
+.+|||||+|+..........+.. .+. -...++|||+||+++|++....+
T Consensus 666 ~~~LDyI~~S~~~l~~~~~~~~~~~~~~~~~~~~-P~~~~pSDH~pV~a~f~l~~~~~ 722 (727)
T 4b8c_D 666 TDVIDYIWFSTHALRVRGLLGEVDPEYVSKFIGF-PNDKFPSDHIPLLARFEFMKTNT 722 (727)
T ss_dssp CBCC-----------------CCCHHHHTTCSSS-SBTTBCSSBCC------------
T ss_pred CCeeeeEEEcCCceeEeeccCCCCHHHhcccCCC-CCCCCCCCceeEEEEEEEecCCC
Confidence 367999999987543222111111 000 01246799999999999865443
No 26
>2a40_B Deoxyribonuclease-1; WAVE, WH2, WAsp, actin, DNAse I, ARP2/3, structural protein; HET: HIC NAG ATP; 1.80A {Bos taurus} SCOP: d.151.1.1 PDB: 1dnk_A* 2a3z_B* 2a41_B* 2a42_B* 2d1k_B* 2dnj_A* 3cjc_D* 3dni_A* 1atn_D*
Probab=99.04 E-value=1.1e-09 Score=90.43 Aligned_cols=44 Identities=20% Similarity=0.209 Sum_probs=27.8
Q ss_pred ceeeEEEeChhhhh-ce--eeEEEecCCc-----CCCCCCCCCcCceEEEEe
Q 026782 174 MRIDYFIVSEELKD-RI--IACEMQGHGI-----ELEGFYGSDHCPVSLELS 217 (233)
Q Consensus 174 ~RID~i~vs~~l~~-~v--~~~~i~~~~~-----~~~~~~~SDH~PV~~~l~ 217 (233)
.+|||||+++.+.. .+ .++.|..... .......|||+||+++|+
T Consensus 209 ~~lD~I~~s~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~SDH~PV~~~l~ 260 (260)
T 2a40_B 209 CAYDRIVVAGSLLQSSVVPGSAAPFDFQAAYGLSNEMALAISDHYPVEVTLT 260 (260)
T ss_dssp CCCEEEEEESHHHHHHBCTTCCEECCHHHHTTCCHHHHHHHCSBCCEEEEBC
T ss_pred CCcccEEEcchHhhhcccCCCCceeehHHhcCCCHHHHhhcCCCCeEEEEeC
Confidence 58999999998752 23 3566642100 000135799999999873
No 27
>2imq_X Salivary nitrophorin; ferrous heme, beta-sandwich, transport protein; HET: HEM; 1.30A {Cimex lectularius} SCOP: d.151.1.2 PDB: 1ntf_A* 1y21_A* 1yjh_A* 1si6_X*
Probab=99.00 E-value=2.1e-10 Score=96.39 Aligned_cols=56 Identities=20% Similarity=0.300 Sum_probs=33.0
Q ss_pred EEEEEEC----CEEEEEEEecCCCCCCccchHHHHHHHHHHHHHHHHhc-CCCCEEEEcCCCccCC
Q 026782 34 VILAEFE----TFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC-SGKPLIWCGDLNVSHE 94 (233)
Q Consensus 34 ~i~~~~~----~~~l~nvy~P~~~~~~~~~~~~~r~~~~~~l~~~l~~~-~~~~vIi~GDFN~~~~ 94 (233)
++.+++. .|.++|+|+.+.....++ |.+.++.|.+.++.. ...++|+|||||...+
T Consensus 117 av~~r~~~~~~~~~fvn~HL~~~~~~~~~-----R~~~~~~I~~~~~~~~~~~~vi~~GDfN~r~~ 177 (282)
T 2imq_X 117 GIVTSFTIYNKRFSFTTSRMSDEDVTSTN-----TKYAYDTRLDYSKKDDPSDFLFWIGDLNVRVE 177 (282)
T ss_dssp EEEEEEEETTEEEEEEEEECCTTCCCTTS-----SSSSCCGGGCTTSSSSCCSEEEEEEECSCCBC
T ss_pred eEEEEEEECCEEEEEEEECCCCCCchHHH-----HHHHHHHHHHhhhccCccceEEEecccccccC
Confidence 5555553 699999999987432111 221223333333222 3468999999998654
No 28
>1i9z_A Synaptojanin, phosphatidylinositol phosphate phosphatase; spsynaptojanin, IPP5C, IP3, IP2,, hydrolase; HET: 2IP; 1.80A {Schizosaccharomyces pombe} SCOP: d.151.1.2 PDB: 1i9y_A*
Probab=98.97 E-value=6.6e-09 Score=89.68 Aligned_cols=81 Identities=9% Similarity=0.065 Sum_probs=46.3
Q ss_pred eEEEEEeecccCe----ee-----eccCCCCCCCCCCCCEEEEEEC----CEEEEEEEecCCCCCCccchHHHHHHHHHH
Q 026782 4 FICLFYVCLCNNS----SV-----FHFLLSALKYEPDGRVILAEFE----TFYLLNTYAPNNGWKEEENSFQRRRKWDKR 70 (233)
Q Consensus 4 ~~~~i~sr~~~~~----~~-----~~~~~~~~~~d~~gR~i~~~~~----~~~l~nvy~P~~~~~~~~~~~~~r~~~~~~ 70 (233)
.+++|++|.+... +. .|+.+. . .....+.+.+. .+.++|+|+.++... .+.|.+-+..
T Consensus 113 ~~L~Vfvr~~~~~~i~~v~~~~v~tG~~g~---~-gnKGav~vr~~~~~~~l~fvn~HLaa~~~~-----~~~R~~d~~~ 183 (347)
T 1i9z_A 113 TALMIFCKESCLPSIKNVEGTVKKTGLGGV---S-GNKGAVAIRFDYEDTGLCFITSHLAAGYTN-----YDERDHDYRT 183 (347)
T ss_dssp EEEEEEEEGGGGGGEEEEEEEEEECCCC--------CCEEEEEEEEETTEEEEEEEEECCCCSSC-----HHHHHHHHHH
T ss_pred eEEEEEEehHhhhhccceeeeeEeccCCCc---c-CCCceEEEEEEECCeEEEEEEecCCCCCcc-----HHHHHHHHHH
Confidence 4677889977532 22 333321 1 12234555553 699999999887642 2235554555
Q ss_pred HHHHHHh------cCCCCEEEEcCCCccC
Q 026782 71 IQEFVLQ------CSGKPLIWCGDLNVSH 93 (233)
Q Consensus 71 l~~~l~~------~~~~~vIi~GDFN~~~ 93 (233)
+.+.+.. ....++|++||||.-.
T Consensus 184 I~~~l~f~~~~~i~~~d~v~~~GDlNyRi 212 (347)
T 1i9z_A 184 IASGLRFRRGRSIFNHDYVVWFGDFNYRI 212 (347)
T ss_dssp HHHHCCCGGGCCTTSSSEEEEEEECCCCB
T ss_pred HHHhhccCcccccccCccEEEeccccccc
Confidence 5544321 1346899999999643
No 29
>3ngq_A CCR4-NOT transcription complex subunit 6-like; alpha/beta sandwich fold, hydrolase; HET: 1PS; 1.80A {Homo sapiens} PDB: 3ngo_A 3ngn_A
Probab=98.92 E-value=1.7e-08 Score=88.64 Aligned_cols=49 Identities=16% Similarity=0.102 Sum_probs=32.4
Q ss_pred EEEEEEEecCCCCCCccchHHHHHHHHHHHHHHHHhc---------------CCCCEEEEcCCCccCCC
Q 026782 42 FYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQC---------------SGKPLIWCGDLNVSHEE 95 (233)
Q Consensus 42 ~~l~nvy~P~~~~~~~~~~~~~r~~~~~~l~~~l~~~---------------~~~~vIi~GDFN~~~~~ 95 (233)
+.|+|+|+...... -..|......|.+.+++. ...|+|+|||||+.+.+
T Consensus 197 l~V~nTHL~~~p~~-----~~vRl~Q~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~PvIl~GDFNs~P~s 260 (398)
T 3ngq_A 197 LIVANAHMHWDPEY-----SDVKLIQTMMFVSEVKNILEKASSRPGSPTADPNSIPLVLCADLNSLPDS 260 (398)
T ss_dssp EEEEEEECCCCTTC-----HHHHHHHHHHHHHHHHHHHCC-------------CCCEEEEEECSCCTTS
T ss_pred EEEEEeCcCCCCCC-----HHHHHHHHHHHHHHHHHHHHHhhcccccccccCCCCceEEEeeCCCCCCC
Confidence 99999999774321 123555555555555431 23589999999998864
No 30
>2xsw_A 72 kDa inositol polyphosphate 5-phosphatase; inositol signalling, SGC stockholm, structural genomics CONS hydrolase; 1.90A {Homo sapiens}
Probab=98.45 E-value=1.2e-06 Score=75.84 Aligned_cols=49 Identities=16% Similarity=0.232 Sum_probs=32.4
Q ss_pred CEEEEEEEecCCCCCCccchHHHHHHHHHHHHHHHHh------------------cCCCCEEEEcCCCccCC
Q 026782 41 TFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQ------------------CSGKPLIWCGDLNVSHE 94 (233)
Q Consensus 41 ~~~l~nvy~P~~~~~~~~~~~~~r~~~~~~l~~~l~~------------------~~~~~vIi~GDFN~~~~ 94 (233)
.|.++|+|+.++... .+.|.+-+..+.+.+.- .....+|++||||.-.+
T Consensus 144 ~~~Fvn~HLaa~~~~-----~~~Rn~d~~~I~~~l~f~~~~~~~~~~~~~~~~~~~~~d~vfw~GDlNyRi~ 210 (357)
T 2xsw_A 144 SFLFITSHFTSGDGK-----VAERLLDYTRTVQALVLPRNVPDTNPYRSSAADVTTRFDEVFWFGDFNFRLS 210 (357)
T ss_dssp EEEEEEEECCCSTTC-----HHHHHHHHHHHHHHCCCCSSSCCSSGGGCBTTBGGGSSSEEEEEEECCCCBS
T ss_pred EEEEEEEccCCCCch-----HHHHHHHHHHHHHHhcccccccccccccccccccccccceEEEecccCcccc
Confidence 799999999887642 23455555555544421 02368999999998544
No 31
>4a9c_A Phosphatidylinositol-3,4,5-trisphosphate 5-phosph; SGC, signalling, structural genomics consortium stockholm, magnesium binding, hydrolase; HET: B5F; 2.10A {Homo sapiens} PDB: 3nr8_B*
Probab=97.80 E-value=0.00047 Score=58.39 Aligned_cols=44 Identities=18% Similarity=0.136 Sum_probs=26.5
Q ss_pred cceeeEEEeChhhhhceeeEEEecCCcCCCCCCCCCcCceEEEEeccC
Q 026782 173 RMRIDYFIVSEELKDRIIACEMQGHGIELEGFYGSDHCPVSLELSEAS 220 (233)
Q Consensus 173 ~~RID~i~vs~~l~~~v~~~~i~~~~~~~~~~~~SDH~PV~~~l~~~~ 220 (233)
.+--|+||....-...+.-..+... +....|||.||.+.|.+..
T Consensus 270 PaWcDRIL~~~~~~~~i~~~~Y~s~----~~~~~SDHrPV~a~f~v~V 313 (316)
T 4a9c_A 270 PSWCDRILWKSYPETHIICNSYGCT----DDIVTSDHSPVFGTFEVGV 313 (316)
T ss_dssp CBCCEEEEEEECTTCCEEEEEEEEC----SSCCSSSSCCEEEEEEEEC
T ss_pred CcccceEEeccCCCCceEEeeeccc----CCcCCCCcccEEEEEEEEE
Confidence 4667999975421112221122211 1368899999999998765
No 32
>3mtc_A Type II inositol-1,4,5-trisphosphate 5-phosphatas; INPP5BA,phosphoinositide 5-phosphatase, inositol signalling, phosphatase, magnesium; HET: PIF; 2.40A {Homo sapiens} PDB: 3n9v_A
Probab=97.57 E-value=0.00045 Score=58.37 Aligned_cols=49 Identities=22% Similarity=0.306 Sum_probs=31.6
Q ss_pred CEEEEEEEecCCCCCCccchHHHHHHHHHHHHHHHHh------------cCCCCEEEEcCCCccCC
Q 026782 41 TFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVLQ------------CSGKPLIWCGDLNVSHE 94 (233)
Q Consensus 41 ~~~l~nvy~P~~~~~~~~~~~~~r~~~~~~l~~~l~~------------~~~~~vIi~GDFN~~~~ 94 (233)
.|.++|+|++.+.. ..+.|.+-+..|.+.+.- .....++++||||--.+
T Consensus 136 s~cFVnsHLaA~~~-----~~~~Rn~d~~~I~~~l~f~~~~~~~~~~~i~~~d~vfw~GDLNyRi~ 196 (313)
T 3mtc_A 136 SICVVNSHLAAHIE-----EYERRNQDYKDICSRMQFCQPDPSLPPLTISNHDVILWLGDLNYRIE 196 (313)
T ss_dssp EEEEEEEECCCSGG-----GHHHHHHHHHHHHHHCCBCCSCSSSCCBCTTSSSEEEEEEECCCCBC
T ss_pred EEEEEeeccCCCch-----HHHHHHHHHHHHHHhcccCCCCCccCCccccCCceEEEecccccccc
Confidence 79999999988753 234465545555444321 01345999999998554
No 33
>2q8u_A Exonuclease, putative; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, hydrolase; HET: MSE; 2.20A {Thermotoga maritima MSB8} PDB: 3thn_A
Probab=22.83 E-value=78 Score=25.87 Aligned_cols=25 Identities=16% Similarity=0.109 Sum_probs=16.6
Q ss_pred HHHHHHHHHHHHHhcCCCCEEEEcC
Q 026782 64 RRKWDKRIQEFVLQCSGKPLIWCGD 88 (233)
Q Consensus 64 r~~~~~~l~~~l~~~~~~~vIi~GD 88 (233)
...+++.+.+.+......-+|++||
T Consensus 46 ~~~~l~~lv~~~~~~~~D~vliaGD 70 (336)
T 2q8u_A 46 LKKALDKVVEEAEKREVDLILLTGD 70 (336)
T ss_dssp HHHHHHHHHHHHHHHTCSEEEEESC
T ss_pred HHHHHHHHHHHHHHhCCCEEEECCc
Confidence 3445566666655445568999999
No 34
>1z0n_A 5'-AMP-activated protein kinase, beta-1 subunit; beta sandwich, sugar binding protein; HET: BCD; 1.49A {Rattus norvegicus} SCOP: b.1.18.21 PDB: 1z0m_A* 2f15_A
Probab=21.87 E-value=34 Score=22.89 Aligned_cols=11 Identities=27% Similarity=0.422 Sum_probs=9.3
Q ss_pred CCEEEEcCCCc
Q 026782 81 KPLIWCGDLNV 91 (233)
Q Consensus 81 ~~vIi~GDFN~ 91 (233)
..|-|+||||-
T Consensus 22 ~~V~v~GdFn~ 32 (96)
T 1z0n_A 22 KEVYLSGSFNN 32 (96)
T ss_dssp SCEEEEEGGGT
T ss_pred cEEEEEEEeCC
Confidence 57889999994
No 35
>2lyd_A Decapping protein 1; DCP1, XRN1, transcription-protein binding complex; NMR {Drosophila melanogaster}
Probab=21.20 E-value=1.4e+02 Score=21.28 Aligned_cols=63 Identities=13% Similarity=0.009 Sum_probs=39.7
Q ss_pred eEEEEEeecccCeeeeccCCCCCCCCCCCCEEEEEECCEEEEEEEecCCCCCCccchHHHHHHHHHHHHHHHH
Q 026782 4 FICLFYVCLCNNSSVFHFLLSALKYEPDGRVILAEFETFYLLNTYAPNNGWKEEENSFQRRRKWDKRIQEFVL 76 (233)
Q Consensus 4 ~~~~i~sr~~~~~~~~~~~~~~~~~d~~gR~i~~~~~~~~l~nvy~P~~~~~~~~~~~~~r~~~~~~l~~~l~ 76 (233)
+|+.|+.|..++.....+... ......+.++..+...-.++++++-... .+.+..+.|.+.++
T Consensus 70 ~~~ivLNR~~~~n~~~~l~~~-~~~e~~~~~li~r~~~~~I~GiWf~~~~---------d~~~i~~~l~~l~~ 132 (134)
T 2lyd_A 70 HSIFINNRLNTTSFVEPITGS-LELQSQPPFLLYRNERSRIRGFWFYNSE---------ECDRISGLVNGLLK 132 (134)
T ss_dssp EEEEEEETTTTEEEEEECCSS-CEEEEETTEEEEEEGGGEEEEEEESSHH---------HHHHHHHHHHHHHH
T ss_pred eEEEEEcCCCCcceeEEcCCC-cEEEeeCCEEEEECCCCcEEEEEecChH---------HHHHHHHHHHHHHh
Confidence 567788887777666555322 2344567788888776678888884432 14555666665554
Done!