BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 026783
(233 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3PY6|A Chain A, Crystal Structure Of A Beta-Lactamase-Like Protein From
Brucella Melitensis Bound To Gmp
pdb|3PY5|A Chain A, Crystal Structure Of A Beta-Lactamase-Like Protein From
Brucella Melitensis Bound To Amp
pdb|3QH8|A Chain A, Crystal Structure Of A Beta-Lactamase-Like Protein Bound
To Amp From Brucella Melitensis, Long Wavelength
Synchrotron Data
Length = 274
Score = 97.1 bits (240), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 67/213 (31%), Positives = 107/213 (50%), Gaps = 18/213 (8%)
Query: 27 ISARIRTIDAVIITHSHADAIGGLDDLRDWTNNVQRHIPIYVAMRDFEVMKKTHYYLVDT 86
I + + +DA + TH HAD I G+DDLR + + R + +Y + T Y +T
Sbjct: 74 IDSGVHMLDAAVYTHPHADHIHGIDDLRTYVVDNGRLMDVYANRLTRNRLYDTFGYCFET 133
Query: 87 SGIIPGAAVSEL--QFNIIDEEPFTVQD----LKITPLPVWHGAGYRSLGFRFGNICYIS 140
G++ + +I E PF+++ ++ P HG SLGFR G++ Y +
Sbjct: 134 P---VGSSYPPILSMHDIAPETPFSIEGAGGAIRFEPFSQVHGD-IESLGFRIGSVVYCT 189
Query: 141 DVSEIPEETYPFLQDCEILIMDALRPDRSSSTHFGLPRALEEVRKIQPKRTLFIGMMHLM 200
DVS PE++ +++D ++LI+ AL+ R +HF L ALE + K+ PKR + M +
Sbjct: 190 DVSAFPEQSLQYIKDADVLIIGALQ-YRPHPSHFSLGEALEWIEKLSPKRAILTHMHVPL 248
Query: 201 DHEKVNEELLKLMETEGLDVQLSYDGLRVPVML 233
D+E V E +E YDGLR V +
Sbjct: 249 DYETVMRETPHHVEP-------GYDGLRFEVAV 274
>pdb|3MD7|A Chain A, Crystal Structure Of A Beta-Lactamase-Like Protein Bound
To Gmp From Brucella Melitensis
Length = 293
Score = 97.1 bits (240), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 67/213 (31%), Positives = 107/213 (50%), Gaps = 18/213 (8%)
Query: 27 ISARIRTIDAVIITHSHADAIGGLDDLRDWTNNVQRHIPIYVAMRDFEVMKKTHYYLVDT 86
I + + +DA + TH HAD I G+DDLR + + R + +Y + T Y +T
Sbjct: 93 IDSGVHMLDAAVYTHPHADHIHGIDDLRTYVVDNGRLMDVYANRLTRNRLYDTFGYCFET 152
Query: 87 SGIIPGAAVSEL--QFNIIDEEPFTVQD----LKITPLPVWHGAGYRSLGFRFGNICYIS 140
G++ + +I E PF+++ ++ P HG SLGFR G++ Y +
Sbjct: 153 P---VGSSYPPILSMHDIAPETPFSIEGAGGAIRFEPFSQVHGD-IESLGFRIGSVVYCT 208
Query: 141 DVSEIPEETYPFLQDCEILIMDALRPDRSSSTHFGLPRALEEVRKIQPKRTLFIGMMHLM 200
DVS PE++ +++D ++LI+ AL+ R +HF L ALE + K+ PKR + M +
Sbjct: 209 DVSAFPEQSLQYIKDADVLIIGALQ-YRPHPSHFSLGEALEWIEKLSPKRAILTHMHVPL 267
Query: 201 DHEKVNEELLKLMETEGLDVQLSYDGLRVPVML 233
D+E V E +E YDGLR V +
Sbjct: 268 DYETVMRETPHHVEP-------GYDGLRFEVAV 293
>pdb|3G1P|A Chain A, Crystals Structure Of Phnp From E.Coli K-12
pdb|3G1P|B Chain B, Crystals Structure Of Phnp From E.Coli K-12
pdb|3P2U|A Chain A, Crystal Structure Of Phnp In Complex With Orthovanadate
pdb|3P2U|B Chain B, Crystal Structure Of Phnp In Complex With Orthovanadate
Length = 258
Score = 44.7 bits (104), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 55/212 (25%), Positives = 91/212 (42%), Gaps = 41/212 (19%)
Query: 33 TIDAVIITHSHADAIGGLDDLRDWTNNVQRHIPIYVAMRDF---EVMKKTHYYLVDTSGI 89
+ ++TH H D + GL LR W V IP+Y + ++ K H L+D S
Sbjct: 68 SFQQFLLTHYHMDHVQGLFPLR-W--GVGDPIPVYGPPDEQGCDDLFK--HPGLLDFSHT 122
Query: 90 IPGAAVSELQFNIIDEEPFTV---QDLKITPLPVWHGA---GYRSLGFRFGNICYISDVS 143
+ EPF V Q L++TPLP+ H GY L + ++SD +
Sbjct: 123 V---------------EPFVVFDLQGLQVTPLPLNHSKLTFGYL-LETAHSRVAWLSDTA 166
Query: 144 EIPEETYPFLQDC--EILIMDALRPDRSSS--THFGLPRALEEVRKIQPKRTLFIGMMHL 199
+PE+T FL++ ++++MD P R+ + H L L + I+ R + + H
Sbjct: 167 GLPEKTLKFLRNNQPQVMVMDCSHPPRADAPRNHCDLNTVLALNQVIRSPRVILTHISHQ 226
Query: 200 MDHEKVNEELLKLMETEGLDVQLSYDGLRVPV 231
D + L E + +DG+ + V
Sbjct: 227 FDAWLMENALPSGFE-------VGFDGMEIGV 251
>pdb|2BFK|A Chain A, Bacillus Cereus Metallo-Beta-Lactamase (Bcii) Arg (121)
Cys Mutant. Solved At Ph7 Using 20mm Znso4 In Buffer.
1mm Dtt Was Used As A Reducing Agent
pdb|2BFK|B Chain B, Bacillus Cereus Metallo-Beta-Lactamase (Bcii) Arg (121)
Cys Mutant. Solved At Ph7 Using 20mm Znso4 In Buffer.
1mm Dtt Was Used As A Reducing Agent
pdb|2BFL|A Chain A, Bacillus Cereus Metallo-Beta-Lactamase (Bcii) Arg (121)
Cys Mutant. Solved At Ph5 Using 20mm Znso4 In Buffer.
1mm Dtt Was Used As A Reducing Agent.
pdb|2BFL|B Chain B, Bacillus Cereus Metallo-Beta-Lactamase (Bcii) Arg (121)
Cys Mutant. Solved At Ph5 Using 20mm Znso4 In Buffer.
1mm Dtt Was Used As A Reducing Agent.
pdb|2BG2|A Chain A, Bacillus Cereus Metallo-Beta-Lactamase (Bcii) Arg (121)
Cys Mutant. Solved At Ph4.5 Using 20mm Znso4 In The
Buffer. 1mm Dtt And 1mm Tcep-Hcl Were Used As Reducing
Agents. Cys221 Is Reduced.
pdb|2BG2|B Chain B, Bacillus Cereus Metallo-Beta-Lactamase (Bcii) Arg (121)
Cys Mutant. Solved At Ph4.5 Using 20mm Znso4 In The
Buffer. 1mm Dtt And 1mm Tcep-Hcl Were Used As Reducing
Agents. Cys221 Is Reduced.
pdb|2BG8|B Chain B, Bacillus Cereus Metallo-Beta-Lactamase (Bcii) Arg (121)
Cys Mutant. Solved At Ph4.5 Using 20 Micromolar Znso4 In
The Buffer. 1mm Dtt And 1mm Tcep-Hcl Were Used As
Reducing Agents
Length = 227
Score = 33.9 bits (76), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 6/50 (12%)
Query: 32 RTIDAVIITHSHADAIGGLDDLRDWTNNVQRHIPIYVAMRDFEVMKKTHY 81
+ + VIITH+HAD IGG+ L+ +R I + E+ KK Y
Sbjct: 77 KRVTDVIITHAHADCIGGIKTLK------ERGIKAHSTALTAELAKKNGY 120
>pdb|2BFZ|A Chain A, Bacillus Cereus Metallo-Beta-Lactamase (Bcii) Arg (121)
Cys Mutant. Solved At Ph4.5 Using 20mm Znso4 In Buffer.
1mm Dtt Was Used As A Reducing Agent. Cys221 Is
Oxidized.
pdb|2BFZ|B Chain B, Bacillus Cereus Metallo-Beta-Lactamase (Bcii) Arg (121)
Cys Mutant. Solved At Ph4.5 Using 20mm Znso4 In Buffer.
1mm Dtt Was Used As A Reducing Agent. Cys221 Is
Oxidized.
pdb|2BG6|A Chain A, Bacillus Cereus Metallo-Beta-Lactamase (Bcii) Arg (121)
Cys Mutant. Solved At Ph5 Using 20 Micromolar Znso4 In
The Buffer. 1mm Dtt Was Used As A Reducing Agent. Cys221
Is Oxidized.
pdb|2BG6|B Chain B, Bacillus Cereus Metallo-Beta-Lactamase (Bcii) Arg (121)
Cys Mutant. Solved At Ph5 Using 20 Micromolar Znso4 In
The Buffer. 1mm Dtt Was Used As A Reducing Agent. Cys221
Is Oxidized.
pdb|2BG7|A Chain A, Bacillus Cereus Metallo-Beta-Lactamase (Bcii) Arg (121)
Cys Mutant. Solved At Ph4.5 Using 20 Micromolar Znso4 In
The Buffer. 1mm Dtt Was Used As A Reducing Agent. Cys221
Is Oxidized.
pdb|2BG7|B Chain B, Bacillus Cereus Metallo-Beta-Lactamase (Bcii) Arg (121)
Cys Mutant. Solved At Ph4.5 Using 20 Micromolar Znso4 In
The Buffer. 1mm Dtt Was Used As A Reducing Agent. Cys221
Is Oxidized.
pdb|2BG8|A Chain A, Bacillus Cereus Metallo-Beta-Lactamase (Bcii) Arg (121)
Cys Mutant. Solved At Ph4.5 Using 20 Micromolar Znso4 In
The Buffer. 1mm Dtt And 1mm Tcep-Hcl Were Used As
Reducing Agents.
pdb|2BGA|A Chain A, Bacillus Cereus Metallo-Beta-Lactamase (Bcii) Arg (121)
Cys Mutant. Solved At Ph7 Using 20 Micromolar Znso4 In
The Buffer. 1mm Dtt Was Used As A Reducing Agent. Cys221
Is Oxidized.
pdb|2BGA|B Chain B, Bacillus Cereus Metallo-Beta-Lactamase (Bcii) Arg (121)
Cys Mutant. Solved At Ph7 Using 20 Micromolar Znso4 In
The Buffer. 1mm Dtt Was Used As A Reducing Agent. Cys221
Is Oxidized
Length = 227
Score = 33.9 bits (76), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 6/50 (12%)
Query: 32 RTIDAVIITHSHADAIGGLDDLRDWTNNVQRHIPIYVAMRDFEVMKKTHY 81
+ + VIITH+HAD IGG+ L+ +R I + E+ KK Y
Sbjct: 77 KRVTDVIITHAHADCIGGIKTLK------ERGIKAHSTALTAELAKKNGY 120
>pdb|1DXK|A Chain A, Metallo-Beta-Lactamase From Bacillus Cereus 569H9 C168S
Mutant
Length = 227
Score = 33.5 bits (75), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 6/50 (12%)
Query: 32 RTIDAVIITHSHADAIGGLDDLRDWTNNVQRHIPIYVAMRDFEVMKKTHY 81
+ + VIITH+HAD IGG+ L+ +R I + E+ KK Y
Sbjct: 77 KRVTDVIITHAHADRIGGIKTLK------ERGIKAHSTALTAELAKKNGY 120
>pdb|1BMC|A Chain A, Structure Of A Zinc Metallo-Beta-Lactamase From Bacillus
Cereus
Length = 221
Score = 33.5 bits (75), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 6/50 (12%)
Query: 32 RTIDAVIITHSHADAIGGLDDLRDWTNNVQRHIPIYVAMRDFEVMKKTHY 81
+ + VIITH+HAD IGG+ L+ +R I + E+ KK Y
Sbjct: 71 KRVTDVIITHAHADRIGGIKTLK------ERGIKAHSTALTAELAKKNGY 114
>pdb|1BC2|A Chain A, Zn-Dependent Metallo-Beta-Lactamase From Bacillus Cereus
pdb|1BC2|B Chain B, Zn-Dependent Metallo-Beta-Lactamase From Bacillus Cereus
pdb|1BVT|A Chain A, Metallo-Beta-Lactamase From Bacillus Cereus 569H9
pdb|1MQO|A Chain A, Metallo-Beta-Lactamase Bcii Cd Substituted From Bacillus
Cereus At 1.35 Angstroms Resolution
pdb|3I11|A Chain A, Cobalt-Substituted Metallo-Beta-Lactamase From Bacillus
Cereus
pdb|3I13|A Chain A, Bacillus Cereus Zn-dependent Metallo-beta-lactamase At Ph
5.8
Length = 227
Score = 33.5 bits (75), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 6/50 (12%)
Query: 32 RTIDAVIITHSHADAIGGLDDLRDWTNNVQRHIPIYVAMRDFEVMKKTHY 81
+ + VIITH+HAD IGG+ L+ +R I + E+ KK Y
Sbjct: 77 KRVTDVIITHAHADRIGGIKTLK------ERGIKAHSTALTAELAKKNGY 120
>pdb|2BC2|A Chain A, Metallo Beta-Lactamase Ii From Bacillus Cereus 569H9 AT Ph
6.0, Trigonal Crystal Form
pdb|2BC2|B Chain B, Metallo Beta-Lactamase Ii From Bacillus Cereus 569H9 AT Ph
6.0, Trigonal Crystal Form
pdb|3BC2|A Chain A, Metallo Beta-Lactamase Ii From Bacillus Cereus 569H9 AT Ph
6.0, Monoclinic Crystal Form
pdb|3I15|A Chain A, Cobalt-Substituted Metallo-Beta-Lactamase From Bacillus
Cereus: Residue Cys168 Fully Oxidized
Length = 227
Score = 33.5 bits (75), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 6/50 (12%)
Query: 32 RTIDAVIITHSHADAIGGLDDLRDWTNNVQRHIPIYVAMRDFEVMKKTHY 81
+ + VIITH+HAD IGG+ L+ +R I + E+ KK Y
Sbjct: 77 KRVTDVIITHAHADRIGGIKTLK------ERGIKAHSTALTAELAKKNGY 120
>pdb|3KNR|A Chain A, Bacillus Cereus Metallo-Beta-Lactamase Cys221asp Mutant, 1
Mm Zn(Ii)
pdb|3KNR|B Chain B, Bacillus Cereus Metallo-Beta-Lactamase Cys221asp Mutant, 1
Mm Zn(Ii)
pdb|3KNR|C Chain C, Bacillus Cereus Metallo-Beta-Lactamase Cys221asp Mutant, 1
Mm Zn(Ii)
pdb|3KNR|D Chain D, Bacillus Cereus Metallo-Beta-Lactamase Cys221asp Mutant, 1
Mm Zn(Ii)
pdb|3KNS|A Chain A, Bacillus Cereus Metallo-Beta-Lactamase Cys221asp Mutant,
20 Mm Zn(Ii)
pdb|3KNS|B Chain B, Bacillus Cereus Metallo-Beta-Lactamase Cys221asp Mutant,
20 Mm Zn(Ii)
pdb|3KNS|C Chain C, Bacillus Cereus Metallo-Beta-Lactamase Cys221asp Mutant,
20 Mm Zn(Ii)
pdb|3KNS|D Chain D, Bacillus Cereus Metallo-Beta-Lactamase Cys221asp Mutant,
20 Mm Zn(Ii)
Length = 227
Score = 33.1 bits (74), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 6/50 (12%)
Query: 32 RTIDAVIITHSHADAIGGLDDLRDWTNNVQRHIPIYVAMRDFEVMKKTHY 81
+ + VIITH+HAD IGG+ L+ +R I + E+ KK Y
Sbjct: 77 KRVTDVIITHAHADRIGGIKTLK------ERGIKAHSTALTAELAKKNGY 120
>pdb|3I14|A Chain A, Cobalt-Substituted Metallo-Beta-Lactamase From Bacillus
Cereus: Residue Cys168 Partially Oxidized
Length = 216
Score = 33.1 bits (74), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 6/50 (12%)
Query: 32 RTIDAVIITHSHADAIGGLDDLRDWTNNVQRHIPIYVAMRDFEVMKKTHY 81
+ + VIITH+HAD IGG+ L+ +R I + E+ KK Y
Sbjct: 65 KRVTDVIITHAHADRIGGIKTLK------ERGIKAHSTALTAELAKKNGY 108
>pdb|3I0V|A Chain A, Bacillus Cereus Metallo-beta-lactamase: Apo Form
Length = 212
Score = 33.1 bits (74), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 6/50 (12%)
Query: 32 RTIDAVIITHSHADAIGGLDDLRDWTNNVQRHIPIYVAMRDFEVMKKTHY 81
+ + VIITH+HAD IGG+ L+ +R I + E+ KK Y
Sbjct: 61 KRVTDVIITHAHADRIGGIKTLK------ERGIKAHSTALTAELAKKNGY 104
>pdb|2NZF|A Chain A, Structure Of Beta-Lactamase Ii From Bacillus Cereus.
R121h, C221s Double Mutant. Space Group C2
Length = 221
Score = 33.1 bits (74), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 6/50 (12%)
Query: 32 RTIDAVIITHSHADAIGGLDDLRDWTNNVQRHIPIYVAMRDFEVMKKTHY 81
+ + VIITH+HAD IGG+ L+ +R I + E+ KK Y
Sbjct: 71 KRVTDVIITHAHADHIGGIKTLK------ERGIKAHSTALTAELAKKNGY 114
>pdb|2NZE|A Chain A, Structure Of Beta-lactamase Ii From Bacillus Cereus.
R121h, C221s Double Mutant. Space Group P3121.
pdb|2NZE|B Chain B, Structure Of Beta-lactamase Ii From Bacillus Cereus.
R121h, C221s Double Mutant. Space Group P3121
Length = 222
Score = 33.1 bits (74), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 6/50 (12%)
Query: 32 RTIDAVIITHSHADAIGGLDDLRDWTNNVQRHIPIYVAMRDFEVMKKTHY 81
+ + VIITH+HAD IGG+ L+ +R I + E+ KK Y
Sbjct: 72 KRVTDVIITHAHADHIGGIKTLK------ERGIKAHSTALTAELAKKNGY 115
>pdb|3FCZ|A Chain A, Adaptive Protein Evolution Grants Organismal Fitness By
Improving Catalysis And Flexibility
pdb|3FCZ|B Chain B, Adaptive Protein Evolution Grants Organismal Fitness By
Improving Catalysis And Flexibility
Length = 222
Score = 33.1 bits (74), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 26/50 (52%), Gaps = 7/50 (14%)
Query: 32 RTIDAVIITHSHADAIGGLDDLRDWTNNVQRHIPIYVAMRDFEVMKKTHY 81
R DA IITH+HAD IGG+ L+ +R I + E+ KK Y
Sbjct: 73 RVTDA-IITHAHADRIGGIKTLK------ERGIKAHSTALTAELAKKNGY 115
>pdb|2NXA|A Chain A, Structure Of Zn-Dependent Metallo-Beta-Lactamase From
Bacillus Cereus R121h, C221d Double Mutant
pdb|2NYP|A Chain A, Structure Of Beta-Lactamase Ii From Bacillus Cereus.
R121h, C221d Doble Mutant With Two Zinc Ions
Length = 221
Score = 33.1 bits (74), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 6/50 (12%)
Query: 32 RTIDAVIITHSHADAIGGLDDLRDWTNNVQRHIPIYVAMRDFEVMKKTHY 81
+ + VIITH+HAD IGG+ L+ +R I + E+ KK Y
Sbjct: 71 KRVTDVIITHAHADHIGGIKTLK------ERGIKAHSTALTAELAKKNGY 114
>pdb|2UYX|A Chain A, Metallo-Beta-Lactamase (1bc2) Single Point Mutant D120s
Length = 228
Score = 31.2 bits (69), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 6/50 (12%)
Query: 32 RTIDAVIITHSHADAIGGLDDLRDWTNNVQRHIPIYVAMRDFEVMKKTHY 81
+ + VIITH+HA IGG+ L+ +R I + E+ KK Y
Sbjct: 78 KRVTDVIITHAHASRIGGIKTLK------ERGIKAHSTALTAELAKKNGY 121
>pdb|1DD6|A Chain A, Imp-1 Metallo Beta-Lactamase From Pseudomonas Aeruginosa
In Complex With A Mercaptocarboxylate Inhibitor
pdb|1DD6|B Chain B, Imp-1 Metallo Beta-Lactamase From Pseudomonas Aeruginosa
In Complex With A Mercaptocarboxylate Inhibitor
pdb|1JJT|A Chain A, Imp-1 Metallo Beta-lactamase From Pseudomonas Aeruginosa
In Complex With A Biaryl Succinic Acid Inhibitor (1)
pdb|1JJT|B Chain B, Imp-1 Metallo Beta-lactamase From Pseudomonas Aeruginosa
In Complex With A Biaryl Succinic Acid Inhibitor (1)
pdb|1VGN|A Chain A, Structure-Based Design Of The Irreversible Inhibitors To
Metallo--Lactamase (Imp-1)
pdb|1VGN|B Chain B, Structure-Based Design Of The Irreversible Inhibitors To
Metallo--Lactamase (Imp-1)
pdb|2DOO|A Chain A, The Structure Of Imp-1 Complexed With The Detecting
Reagent (Dansylc4sh) By A Fluorescent Probe
pdb|2DOO|B Chain B, The Structure Of Imp-1 Complexed With The Detecting
Reagent (Dansylc4sh) By A Fluorescent Probe
Length = 228
Score = 30.4 bits (67), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 6/49 (12%)
Query: 30 RIRTIDAVIITHSHADAIGGLDDLRDWTNNVQRHIPIYVAMRDFEVMKK 78
R I I +H H+D+ GG+ +W N+ R IP Y + E++KK
Sbjct: 66 RGYKIKGSISSHFHSDSTGGI----EWLNS--RSIPTYASELTNELLKK 108
>pdb|1JJE|A Chain A, Imp-1 Metallo Beta-Lactamase From Pseudomonas Aeruginosa
In Complex With A Biaryl Succinic Acid Inhibitor (11)
pdb|1JJE|B Chain B, Imp-1 Metallo Beta-Lactamase From Pseudomonas Aeruginosa
In Complex With A Biaryl Succinic Acid Inhibitor (11)
Length = 222
Score = 30.4 bits (67), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 6/49 (12%)
Query: 30 RIRTIDAVIITHSHADAIGGLDDLRDWTNNVQRHIPIYVAMRDFEVMKK 78
R I I +H H+D+ GG+ +W N+ R IP Y + E++KK
Sbjct: 66 RGYKIKGSISSHFHSDSTGGI----EWLNS--RSIPTYASELTNELLKK 108
>pdb|1DDK|A Chain A, Crystal Structure Of Imp-1 Metallo Beta-Lactamase From
Pseudomonas Aeruginosa
Length = 220
Score = 30.4 bits (67), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 26/49 (53%), Gaps = 6/49 (12%)
Query: 30 RIRTIDAVIITHSHADAIGGLDDLRDWTNNVQRHIPIYVAMRDFEVMKK 78
R I I +H H+D+ GG+ +W N+ R IP Y + E++KK
Sbjct: 65 RGYKIKGSISSHFHSDSTGGI----EWLNS--RSIPTYASELTNELLKK 107
>pdb|2BIB|A Chain A, Crystal Structure Of The Complete Modular Teichioic Acid
Phosphorylcholine Esterase Pce (Cbpe) From
Streptococcus Pneumoniae
Length = 547
Score = 29.6 bits (65), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 9/23 (39%), Positives = 19/23 (82%)
Query: 31 IRTIDAVIITHSHADAIGGLDDL 53
++ +D +++TH+H+D IG +D+L
Sbjct: 75 VQKLDFILVTHTHSDHIGNVDEL 97
>pdb|3BK1|A Chain A, Crystal Structure Analysis Of Rnase J
pdb|3BK2|A Chain A, Crystal Structure Analysis Of The Rnase JUMP COMPLEX
Length = 562
Score = 29.6 bits (65), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 29/60 (48%), Gaps = 4/60 (6%)
Query: 34 IDAVIITHSHADAIGGLDDLRDWTNNVQRHIPIYVAMRDFEVMKKTHYYLVDTSGIIPGA 93
I A ++TH H D IGGL L + +PIY A +++ ++ G+ PGA
Sbjct: 75 IKAWVLTHGHEDHIGGLPFLLPXIFGKESPVPIYGARLTLGLLRGK----LEEFGLRPGA 130
>pdb|1LXT|A Chain A, Structure Of Phosphotransferase Phosphoglucomutase From
Rabbit
pdb|1LXT|B Chain B, Structure Of Phosphotransferase Phosphoglucomutase From
Rabbit
pdb|1C47|A Chain A, Binding Driven Structural Changes In Crystaline
Phosphoglucomutase Associated With Chemical Reaction
pdb|1C47|B Chain B, Binding Driven Structural Changes In Crystaline
Phosphoglucomutase Associated With Chemical Reaction
pdb|1C4G|A Chain A, Phosphoglucomutase Vanadate Based Transition State Analog
Complex
pdb|1C4G|B Chain B, Phosphoglucomutase Vanadate Based Transition State Analog
Complex
Length = 561
Score = 29.3 bits (64), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 28/107 (26%), Positives = 51/107 (47%), Gaps = 9/107 (8%)
Query: 12 VGFLPMGTCLIIT----SCISARIRTIDAVIITHSHADAIGGLDDLRDWTNNVQRHIPIY 67
+G L +G I++ SCI +I+ I +I+T SH GG + N+ P
Sbjct: 82 IGRLVIGQNGILSTPAVSCIIRKIKAIGGIILTASHNP--GGPNGDFGIKFNISNGGPAP 139
Query: 68 VAMRD--FEVMKKTHYYLVDTSGIIPGAAVSELQFNIIDE-EPFTVQ 111
A+ D F++ K Y + + + + QF++ ++ +PFTV+
Sbjct: 140 EAITDKIFQISKTIEEYAICPDLKVDLGVLGKQQFDLENKFKPFTVE 186
>pdb|1WRA|A Chain A, Crystal Structure Of Phosphorylcholine Esterase Domain
Of The Virulence Factor Choline Binding Protein E From
Streptococcus Pneumoniae
pdb|1WRA|B Chain B, Crystal Structure Of Phosphorylcholine Esterase Domain
Of The Virulence Factor Choline Binding Protein E From
Streptococcus Pneumoniae
Length = 308
Score = 28.9 bits (63), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 9/23 (39%), Positives = 19/23 (82%)
Query: 31 IRTIDAVIITHSHADAIGGLDDL 53
++ +D +++TH+H+D IG +D+L
Sbjct: 74 VQKLDFILVTHTHSDHIGNVDEL 96
>pdb|1CTM|A Chain A, Crystal Structure Of Chloroplast Cytochrome F Reveals A
Novel Cytochrome Fold And Unexpected Heme Ligation
pdb|2PCF|B Chain B, The Complex Of Cytochrome F And Plastocyanin Determined
With Paramagnetic Nmr. Based On The Structures Of
Cytochrome F And Plastocyanin, 10 Structures
Length = 250
Score = 28.9 bits (63), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Query: 88 GIIPGAAVSELQFNIIDEEPFTVQDLKITPLPVWHGAGYRSLG 130
G +PG SE+ F I+ +P T +D+ P++ G G R G
Sbjct: 116 GPVPGQKYSEITFPILAPDPATNKDVHFLKYPIYVG-GNRGRG 157
>pdb|1TKW|B Chain B, The Transient Complex Of Poplar Plastocyanin With Turnip
Cytochrome F Determined With Paramagnetic Nmr
pdb|1HCZ|A Chain A, Lumen-Side Domain Of Reduced Cytochrome F At-35 Degrees
Celsius
Length = 252
Score = 28.9 bits (63), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
Query: 88 GIIPGAAVSELQFNIIDEEPFTVQDLKITPLPVWHGAGYRSLG 130
G +PG SE+ F I+ +P T +D+ P++ G G R G
Sbjct: 116 GPVPGQKYSEITFPILAPDPATNKDVHFLKYPIYVG-GNRGRG 157
>pdb|3NCO|A Chain A, Crystal Structure Of Fncel5a From F. Nodosum Rt17-B1
pdb|3NCO|B Chain B, Crystal Structure Of Fncel5a From F. Nodosum Rt17-B1
Length = 320
Score = 28.5 bits (62), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
Query: 177 PRALEEVRKIQPKRTLFIGMMHLMDHEKVNEELLKLMETEGLDVQLSY 224
P+ L E+RK P R + I + + ++ V E LKL++ + + V Y
Sbjct: 159 PKVLGEIRKTNPSRIVIIDVPNWSNYSYVRE--LKLVDDKNIIVSFHY 204
>pdb|3RJX|A Chain A, Crystal Structure Of Hyperthermophilic
Endo-Beta-1,4-Glucanase
Length = 320
Score = 28.5 bits (62), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
Query: 177 PRALEEVRKIQPKRTLFIGMMHLMDHEKVNEELLKLMETEGLDVQLSY 224
P+ L E+RK P R + I + + ++ V E LKL++ + + V Y
Sbjct: 159 PKVLGEIRKTNPSRIVIIDVPNWSNYSYVRE--LKLVDDKNIIVSFHY 204
>pdb|3RJY|A Chain A, Crystal Structure Of Hyperthermophilic
Endo-Beta-1,4-Glucanase In Complex With Substrate
Length = 320
Score = 28.5 bits (62), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 15/48 (31%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
Query: 177 PRALEEVRKIQPKRTLFIGMMHLMDHEKVNEELLKLMETEGLDVQLSY 224
P+ L E+RK P R + I + + ++ V E LKL++ + + V Y
Sbjct: 159 PKVLGEIRKTNPSRIVIIDVPNWSNYSYVRE--LKLVDDKNIIVSFHY 204
>pdb|3GMI|A Chain A, Crystal Structure Of A Protein Of Unknown Function From
Methanocaldococcus Jannaschii
Length = 357
Score = 28.1 bits (61), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Query: 179 ALEEVRKIQPKRTLFIGMMHLMDHEKVNEELLKLMETEGLDVQLSYD 225
E+++ + PK TL I + L D+ K+NE +LK E L+ YD
Sbjct: 240 KFEDIKNMLPKTTLSI-LKELYDNGKLNELILKRFEDRILETANEYD 285
>pdb|3IDZ|A Chain A, Crystal Structure Of S378q Mutant Ttha0252 From Thermus
Thermophilus Hb8
pdb|3IDZ|B Chain B, Crystal Structure Of S378q Mutant Ttha0252 From Thermus
Thermophilus Hb8
pdb|3IDZ|C Chain C, Crystal Structure Of S378q Mutant Ttha0252 From Thermus
Thermophilus Hb8
pdb|3IDZ|D Chain D, Crystal Structure Of S378q Mutant Ttha0252 From Thermus
Thermophilus Hb8
Length = 431
Score = 26.9 bits (58), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 10/22 (45%), Positives = 16/22 (72%)
Query: 32 RTIDAVIITHSHADAIGGLDDL 53
+ +DAV++TH+H D +G L L
Sbjct: 50 KEVDAVLLTHAHLDHVGRLPKL 71
>pdb|3IE0|A Chain A, Crystal Structure Of S378y Mutant Ttha0252 From Thermus
Thermophilus Hb8
pdb|3IE0|B Chain B, Crystal Structure Of S378y Mutant Ttha0252 From Thermus
Thermophilus Hb8
pdb|3IE0|C Chain C, Crystal Structure Of S378y Mutant Ttha0252 From Thermus
Thermophilus Hb8
pdb|3IE0|D Chain D, Crystal Structure Of S378y Mutant Ttha0252 From Thermus
Thermophilus Hb8
Length = 431
Score = 26.9 bits (58), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 10/22 (45%), Positives = 16/22 (72%)
Query: 32 RTIDAVIITHSHADAIGGLDDL 53
+ +DAV++TH+H D +G L L
Sbjct: 50 KEVDAVLLTHAHLDHVGRLPKL 71
>pdb|3IEK|A Chain A, Crystal Structure Of Native Ttha0252 From Thermus
Thermophilus Hb8
pdb|3IEK|B Chain B, Crystal Structure Of Native Ttha0252 From Thermus
Thermophilus Hb8
pdb|3IEK|C Chain C, Crystal Structure Of Native Ttha0252 From Thermus
Thermophilus Hb8
pdb|3IEK|D Chain D, Crystal Structure Of Native Ttha0252 From Thermus
Thermophilus Hb8
pdb|3IEL|A Chain A, Crystal Structure Of Ttha0252 From Thermus Thermophilus
Hb8 Complexed With Ump
pdb|3IEL|B Chain B, Crystal Structure Of Ttha0252 From Thermus Thermophilus
Hb8 Complexed With Ump
pdb|3IEL|C Chain C, Crystal Structure Of Ttha0252 From Thermus Thermophilus
Hb8 Complexed With Ump
pdb|3IEL|D Chain D, Crystal Structure Of Ttha0252 From Thermus Thermophilus
Hb8 Complexed With Ump
pdb|3IEM|A Chain A, Crystal Structure Of Ttha0252 From Thermus Thermophilus
Hb8 Complexed With Rna Analog
pdb|3IEM|B Chain B, Crystal Structure Of Ttha0252 From Thermus Thermophilus
Hb8 Complexed With Rna Analog
pdb|3IEM|C Chain C, Crystal Structure Of Ttha0252 From Thermus Thermophilus
Hb8 Complexed With Rna Analog
pdb|3IEM|D Chain D, Crystal Structure Of Ttha0252 From Thermus Thermophilus
Hb8 Complexed With Rna Analog
Length = 431
Score = 26.9 bits (58), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 10/22 (45%), Positives = 16/22 (72%)
Query: 32 RTIDAVIITHSHADAIGGLDDL 53
+ +DAV++TH+H D +G L L
Sbjct: 50 KEVDAVLLTHAHLDHVGRLPKL 71
>pdb|3IE1|A Chain A, Crystal Structure Of H380a Mutant Ttha0252 From Thermus
Thermophilus Hb8 Complexed With Rna
pdb|3IE1|B Chain B, Crystal Structure Of H380a Mutant Ttha0252 From Thermus
Thermophilus Hb8 Complexed With Rna
pdb|3IE1|C Chain C, Crystal Structure Of H380a Mutant Ttha0252 From Thermus
Thermophilus Hb8 Complexed With Rna
pdb|3IE1|D Chain D, Crystal Structure Of H380a Mutant Ttha0252 From Thermus
Thermophilus Hb8 Complexed With Rna
Length = 431
Score = 26.9 bits (58), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 10/22 (45%), Positives = 16/22 (72%)
Query: 32 RTIDAVIITHSHADAIGGLDDL 53
+ +DAV++TH+H D +G L L
Sbjct: 50 KEVDAVLLTHAHLDHVGRLPKL 71
>pdb|3IE2|A Chain A, Crystal Structure Of H400v Mutant Ttha0252 From Thermus
Thermophilus Hb8
pdb|3IE2|B Chain B, Crystal Structure Of H400v Mutant Ttha0252 From Thermus
Thermophilus Hb8
pdb|3IE2|C Chain C, Crystal Structure Of H400v Mutant Ttha0252 From Thermus
Thermophilus Hb8
pdb|3IE2|D Chain D, Crystal Structure Of H400v Mutant Ttha0252 From Thermus
Thermophilus Hb8
Length = 431
Score = 26.9 bits (58), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 10/22 (45%), Positives = 16/22 (72%)
Query: 32 RTIDAVIITHSHADAIGGLDDL 53
+ +DAV++TH+H D +G L L
Sbjct: 50 KEVDAVLLTHAHLDHVGRLPKL 71
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.325 0.141 0.426
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,799,204
Number of Sequences: 62578
Number of extensions: 276903
Number of successful extensions: 927
Number of sequences better than 100.0: 36
Number of HSP's better than 100.0 without gapping: 27
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 894
Number of HSP's gapped (non-prelim): 37
length of query: 233
length of database: 14,973,337
effective HSP length: 96
effective length of query: 137
effective length of database: 8,965,849
effective search space: 1228321313
effective search space used: 1228321313
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 50 (23.9 bits)