Query 026783
Match_columns 233
No_of_seqs 125 out of 1595
Neff 9.6
Searched_HMMs 46136
Date Fri Mar 29 12:38:36 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026783.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026783hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK02113 putative hydrolase; P 100.0 4.5E-28 9.7E-33 195.9 21.5 194 25-231 58-252 (252)
2 TIGR02649 true_RNase_BN ribonu 100.0 8.3E-27 1.8E-31 193.2 18.3 191 30-231 51-303 (303)
3 TIGR02651 RNase_Z ribonuclease 99.9 3.3E-26 7.2E-31 189.4 17.1 189 30-231 48-299 (299)
4 PRK05184 pyrroloquinoline quin 99.9 6.8E-26 1.5E-30 186.9 18.1 188 30-231 77-302 (302)
5 TIGR02108 PQQ_syn_pqqB coenzym 99.9 2.9E-25 6.2E-30 182.6 18.7 183 30-231 76-302 (302)
6 PRK11244 phnP carbon-phosphoru 99.9 1E-24 2.2E-29 176.0 19.2 179 29-231 62-250 (250)
7 PRK02126 ribonuclease Z; Provi 99.9 4.3E-24 9.3E-29 177.9 20.5 196 5-202 14-319 (334)
8 TIGR03307 PhnP phosphonate met 99.9 5.9E-24 1.3E-28 170.4 18.3 179 29-229 52-238 (238)
9 PRK00055 ribonuclease Z; Revie 99.9 6.5E-23 1.4E-27 167.2 13.4 197 30-232 50-267 (270)
10 PRK00685 metal-dependent hydro 99.9 7.3E-22 1.6E-26 157.3 17.6 196 9-231 9-228 (228)
11 COG1234 ElaC Metal-dependent h 99.9 1.5E-21 3.3E-26 160.0 18.1 200 30-232 50-292 (292)
12 TIGR02650 RNase_Z_T_toga ribon 99.9 8.4E-22 1.8E-26 157.6 14.5 185 25-216 32-264 (277)
13 PF12706 Lactamase_B_2: Beta-l 99.9 2.4E-20 5.2E-25 144.6 14.8 152 32-196 28-194 (194)
14 PRK04286 hypothetical protein; 99.8 1.8E-19 3.9E-24 148.5 11.9 198 30-230 62-283 (298)
15 PRK11709 putative L-ascorbate 99.8 2.6E-17 5.5E-22 138.0 18.8 167 30-212 106-299 (355)
16 TIGR00649 MG423 conserved hypo 99.8 8.7E-17 1.9E-21 139.0 18.0 174 31-222 56-249 (422)
17 KOG2121 Predicted metal-depend 99.7 1.5E-17 3.3E-22 145.4 0.5 192 31-231 499-715 (746)
18 TIGR03675 arCOG00543 arCOG0054 99.6 6.9E-15 1.5E-19 131.8 15.9 193 31-228 226-442 (630)
19 COG1235 PhnP Metal-dependent h 99.6 1E-15 2.2E-20 124.8 9.6 173 29-208 58-247 (269)
20 COG0595 mRNA degradation ribon 99.6 1.5E-14 3.3E-19 126.6 16.3 178 27-222 60-257 (555)
21 COG1236 YSH1 Predicted exonucl 99.5 2E-13 4.3E-18 117.7 14.6 174 33-213 49-240 (427)
22 smart00849 Lactamase_B Metallo 99.5 1.8E-12 3.8E-17 99.1 12.7 112 25-147 33-148 (183)
23 TIGR03413 GSH_gloB hydroxyacyl 99.4 1.7E-12 3.7E-17 104.6 12.2 84 33-144 43-129 (248)
24 COG1782 Predicted metal-depend 99.4 2.8E-12 6.1E-17 108.5 12.4 195 31-230 232-450 (637)
25 PLN02398 hydroxyacylglutathion 99.4 1.6E-12 3.5E-17 107.7 10.9 113 6-144 86-209 (329)
26 COG2220 Predicted Zn-dependent 99.4 3.6E-11 7.8E-16 97.5 17.9 202 9-231 15-250 (258)
27 COG2333 ComEC Predicted hydrol 99.4 7.8E-12 1.7E-16 101.8 13.6 156 18-200 75-244 (293)
28 PF13483 Lactamase_B_3: Beta-l 99.4 1.8E-12 3.9E-17 97.9 9.3 142 7-195 6-163 (163)
29 PLN02469 hydroxyacylglutathion 99.4 1.6E-12 3.4E-17 105.1 8.8 110 7-143 12-137 (258)
30 TIGR00361 ComEC_Rec2 DNA inter 99.4 1.1E-11 2.5E-16 112.7 14.4 164 20-220 478-655 (662)
31 PRK11921 metallo-beta-lactamas 99.4 5.3E-12 1.2E-16 108.3 11.1 94 30-142 66-163 (394)
32 PRK10241 hydroxyacylglutathion 99.4 7.8E-12 1.7E-16 100.9 11.2 109 7-144 12-130 (251)
33 PRK05452 anaerobic nitric oxid 99.3 1.8E-11 4E-16 107.1 12.2 95 30-142 68-167 (479)
34 PF02112 PDEase_II: cAMP phosp 99.3 5.5E-11 1.2E-15 98.6 14.2 195 32-226 78-335 (335)
35 PRK11539 ComEC family competen 99.3 3.3E-11 7.2E-16 111.1 12.7 141 20-199 539-693 (755)
36 COG1237 Metal-dependent hydrol 99.2 2E-10 4.4E-15 90.4 12.6 62 10-74 32-96 (259)
37 PLN02962 hydroxyacylglutathion 99.2 1.5E-10 3.3E-15 93.0 9.8 113 4-144 20-153 (251)
38 KOG0813 Glyoxylase [General fu 99.2 1.9E-10 4.2E-15 91.4 9.3 112 5-142 11-140 (265)
39 COG0426 FpaA Uncharacterized f 99.2 1.7E-09 3.7E-14 90.6 14.9 96 29-143 68-167 (388)
40 PF00753 Lactamase_B: Metallo- 99.1 1.8E-10 3.8E-15 88.1 5.4 31 27-57 37-67 (194)
41 COG0491 GloB Zn-dependent hydr 99.0 4.2E-09 9E-14 84.3 11.5 116 22-145 52-171 (252)
42 COG5212 PDE1 Low-affinity cAMP 99.0 1.2E-08 2.6E-13 80.5 12.8 195 32-228 111-353 (356)
43 KOG1136 Predicted cleavage and 99.0 1E-08 2.2E-13 83.2 11.6 183 32-217 59-260 (501)
44 KOG1361 Predicted hydrolase in 99.0 1.6E-08 3.4E-13 86.7 12.9 135 10-167 89-234 (481)
45 KOG3798 Predicted Zn-dependent 98.9 5.3E-08 1.2E-12 76.2 11.4 175 26-219 125-326 (343)
46 COG2248 Predicted hydrolase (m 98.8 2.8E-08 6.2E-13 77.7 8.8 129 99-227 133-279 (304)
47 KOG0814 Glyoxylase [General fu 98.6 1.1E-07 2.3E-12 70.5 6.6 111 4-142 18-141 (237)
48 KOG1137 mRNA cleavage and poly 98.5 2.6E-07 5.7E-12 79.5 7.1 173 27-205 59-251 (668)
49 KOG1135 mRNA cleavage and poly 97.5 0.0054 1.2E-07 54.9 14.6 131 30-166 48-201 (764)
50 PF14597 Lactamase_B_5: Metall 97.1 0.0022 4.8E-08 48.3 7.0 99 16-142 30-137 (199)
51 COG2015 Alkyl sulfatase and re 95.4 0.011 2.3E-07 51.2 2.5 45 30-74 161-205 (655)
52 PF07521 RMMBL: RNA-metabolisi 92.8 0.17 3.8E-06 28.8 3.2 29 170-198 14-42 (43)
53 PF13691 Lactamase_B_4: tRNase 88.9 0.38 8.2E-06 29.9 2.2 23 27-49 40-63 (63)
54 TIGR00649 MG423 conserved hypo 86.6 1.8 3.8E-05 37.8 5.8 59 169-232 357-418 (422)
55 TIGR03675 arCOG00543 arCOG0054 82.5 3.6 7.9E-05 37.9 6.1 58 170-231 570-629 (630)
56 KOG1136 Predicted cleavage and 66.4 21 0.00046 30.1 6.0 60 169-232 387-446 (501)
57 KOG4736 Uncharacterized conser 64.9 2.6 5.6E-05 34.5 0.5 39 16-54 102-146 (302)
58 KOG1138 Predicted cleavage and 57.4 36 0.00078 30.4 6.0 54 16-74 79-132 (653)
59 COG0595 mRNA degradation ribon 55.5 25 0.00053 32.0 5.0 62 169-232 367-428 (555)
60 cd07186 CofD_like LPPG:FO 2-ph 53.1 16 0.00035 30.4 3.2 62 133-195 160-223 (303)
61 KOG1137 mRNA cleavage and poly 52.6 36 0.00078 30.8 5.3 51 33-83 207-259 (668)
62 PF08915 tRNA-Thr_ED: Archaea- 48.2 73 0.0016 23.2 5.5 26 177-202 61-86 (138)
63 KOG3592 Microtubule-associated 45.8 10 0.00022 35.2 1.0 26 31-56 79-104 (934)
64 TIGR01826 CofD_related conserv 41.6 35 0.00076 28.5 3.5 62 133-195 150-212 (310)
65 PF07522 DRMBL: DNA repair met 41.2 32 0.00068 23.7 2.8 25 170-194 81-105 (110)
66 cd07187 YvcK_like family of mo 37.7 41 0.00089 28.1 3.4 63 132-195 152-215 (308)
67 COG4892 Predicted heme/steroid 37.3 51 0.0011 20.9 2.9 26 206-232 6-31 (81)
68 COG1782 Predicted metal-depend 35.6 99 0.0022 27.9 5.4 59 169-231 576-636 (637)
69 COG1236 YSH1 Predicted exonucl 30.4 1E+02 0.0023 27.0 4.9 31 171-201 369-399 (427)
70 COG2875 CobM Precorrin-4 methy 30.4 2.6E+02 0.0055 22.6 6.4 43 170-212 55-99 (254)
71 cd07044 CofD_YvcK Family of Co 26.8 73 0.0016 26.7 3.1 63 133-196 151-215 (309)
72 COG0391 Uncharacterized conser 26.3 92 0.002 26.3 3.6 62 133-194 166-228 (323)
73 PF06415 iPGM_N: BPG-independe 24.6 28 0.00061 27.6 0.3 16 41-56 42-57 (223)
No 1
>PRK02113 putative hydrolase; Provisional
Probab=99.96 E-value=4.5e-28 Score=195.85 Aligned_cols=194 Identities=36% Similarity=0.609 Sum_probs=149.4
Q ss_pred hhHhcCCCCCCEEEeccCchhhcCChhHHHhhhccCccCceEEeChhhHHHHHhhcccccccccccCCCccceeeeeeeC
Q 026783 25 SCISARIRTIDAVIITHSHADAIGGLDDLRDWTNNVQRHIPIYVAMRDFEVMKKTHYYLVDTSGIIPGAAVSELQFNIID 104 (233)
Q Consensus 25 ~~~~~~~~~i~~v~iTH~H~DH~ggl~~l~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 104 (233)
++++.++.++|+|||||.|+||++|++.+..+. +.++++||+++.+.+.+.+...+.+... .+++ ....+++.++
T Consensus 58 ~l~~~~~~~id~I~lTH~H~DH~~gl~~l~~~~--~~~~~~i~~~~~~~~~l~~~~~~~~~~~-~~~~--~~~~~~~~~~ 132 (252)
T PRK02113 58 QMLRLPFGKIDAVLITHEHYDHVGGLDDLRPFC--RFGEVPIYAEQYVAERLRSRMPYCFVEH-SYPG--VPNIPLREIE 132 (252)
T ss_pred HHHhcCccccCEEEECCCChhhhCCHHHHHHhc--cCCCceEEECHHHHHHHHhhCCeeeccC-CCCC--CcceeeEEcC
Confidence 444557889999999999999999999886432 2347999999999888876543322111 1111 1234566664
Q ss_pred -CCceEECCEEEEEEEecCCCCCceeEEEEccEEEcCCCCCCCcccccccCCCcEEEEcCcCCCCCCCCCCCHHHHHHHH
Q 026783 105 -EEPFTVQDLKITPLPVWHGAGYRSLGFRFGNICYISDVSEIPEETYPFLQDCEILIMDALRPDRSSSTHFGLPRALEEV 183 (233)
Q Consensus 105 -~~~~~~~~~~i~~~~~~H~~g~~s~~~~i~~i~~~gD~~~~~~~~~~~~~~~d~li~e~~~~~~~~~~H~~~~~~~~~~ 183 (233)
++.+++++++|+++++.|+. .+++||++++++|+||++++++...+.++++|+|++|+... ....+|++++++.+.+
T Consensus 133 ~g~~~~~~~~~i~~~~~~H~~-~~~~gy~i~~i~y~~Dt~~~~~~~~~~~~~~DlLi~e~~~~-~~~~~H~t~~~a~~~~ 210 (252)
T PRK02113 133 PDRPFLVNHTEVTPLRVMHGK-LPILGYRIGKMAYITDMLTMPEEEYEQLQGIDVLVMNALRI-APHPTHQSLEEALENI 210 (252)
T ss_pred CCCCEEECCeEEEEEEecCCC-ccEEEEEeCCEEEccCCCCCCHHHHHHhcCCCEEEEhhhcC-CCCCCcCCHHHHHHHH
Confidence 68899999999999999985 37999999999999999987776778889999999999763 4568999999999999
Q ss_pred HHcCCCeEEEEeeccCCChhHHHHHHHhhhhcCCCceEEcccCeEEec
Q 026783 184 RKIQPKRTLFIGMMHLMDHEKVNEELLKLMETEGLDVQLSYDGLRVPV 231 (233)
Q Consensus 184 ~~~~~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~~~v~~a~dg~~i~l 231 (233)
+++++++++++|+++.... .+++ .+....++.+|+|||++.+
T Consensus 211 ~~~~~k~l~l~H~s~~~~~---~~~~---~~~~~~~~~~A~Dg~~~~~ 252 (252)
T PRK02113 211 KRIGAKETYLIHMSHHIGL---HADV---EKELPPHVHFAYDGLEIIF 252 (252)
T ss_pred HHhCCCEEEEEcccccchh---HHHH---HHhCCCCceeccCceEEeC
Confidence 9999999999999886531 1222 2223347899999999874
No 2
>TIGR02649 true_RNase_BN ribonuclease BN. Members of this protein family are ribonuclease BN of Escherichia coli K-12 and closely related proteins believed to be equivalent in function. Note that E. coli appears to lack RNase Z per se, and this protein of E. coli appears orthologous to (but not functionally equivalent to) RNase Z of Bacillus subtilis and various other species. Meanwhile, the yihY gene product of E. coli previously was incorrectly identified as RNase BN.
Probab=99.95 E-value=8.3e-27 Score=193.16 Aligned_cols=191 Identities=16% Similarity=0.159 Sum_probs=144.9
Q ss_pred CCCCCCEEEeccCchhhcCChhHHHh--hhccCccCceEEeChhhHHHHHhhcccccccccccCCCccceeeeeeeC-CC
Q 026783 30 RIRTIDAVIITHSHADAIGGLDDLRD--WTNNVQRHIPIYVAMRDFEVMKKTHYYLVDTSGIIPGAAVSELQFNIID-EE 106 (233)
Q Consensus 30 ~~~~i~~v~iTH~H~DH~ggl~~l~~--~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~ 106 (233)
++.+|++|||||.|+||++|++.+.. +...+.++++||+|+.+.+.+....... .. . .....++..+. ++
T Consensus 51 ~~~~id~IfiTH~H~DHi~Gl~~ll~~~~~~~~~~~l~Iygp~~~~~~l~~~~~~~-~~---~---~~~~~~~~~i~~~~ 123 (303)
T TIGR02649 51 NPGKLDKIFISHLHGDHLFGLPGLLCSRSMSGIIQPLTIYGPQGIREFVETALRIS-GS---W---TDYPLEIVEIGAGE 123 (303)
T ss_pred CHHHCcEEEEeCCChhhcCCHHHHHHHHHhcCCCCCeEEEechhHHHHHHHHHHhc-cc---c---cCCceEEEEcCCCc
Confidence 45799999999999999999998763 2233345799999999888776543211 00 0 01123445554 56
Q ss_pred ceEECCEEEEEEEecCCCCCceeEEEEc----------------------------------------------------
Q 026783 107 PFTVQDLKITPLPVWHGAGYRSLGFRFG---------------------------------------------------- 134 (233)
Q Consensus 107 ~~~~~~~~i~~~~~~H~~g~~s~~~~i~---------------------------------------------------- 134 (233)
.+..++++|+++|+.|+. .++||++.
T Consensus 124 ~~~~~~~~v~~~~~~H~~--~~~gy~i~~~~~~g~~~~~kl~~lgi~~g~~~~~L~~g~~v~~~dg~~~~~~~~~~~~~~ 201 (303)
T TIGR02649 124 ILDDGLRKVTAYPLEHPL--ECYGYRIEEHDKPGALNAQALKAAGVPPGPLFQELKAGKTITLEDGRQINGADYLAAPVP 201 (303)
T ss_pred eEecCCeEEEEEEccCcc--ceEEEEEeccCCcCCCCHHHHHHCCCCCChHHHHhcCCCeEEeCCCcEEcHHHeeCCCCC
Confidence 777888999999999986 89999984
Q ss_pred --cEEEcCCCCCCCcccccccCCCcEEEEcCcCCCC-----CCCCCCCHHHHHHHHHHcCCCeEEEEeeccCCChhHHHH
Q 026783 135 --NICYISDVSEIPEETYPFLQDCEILIMDALRPDR-----SSSTHFGLPRALEEVRKIQPKRTLFIGMMHLMDHEKVNE 207 (233)
Q Consensus 135 --~i~~~gD~~~~~~~~~~~~~~~d~li~e~~~~~~-----~~~~H~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~ 207 (233)
+++|+|||+++ +.+.+.++++|+|++||++... ...+|++++++.++++++++++++++|++..+..+...+
T Consensus 202 g~~i~y~gDt~~~-~~~~~~~~~adlLi~Eat~~~~~~~~a~~~~H~t~~~a~~~a~~~~~k~lvL~H~s~~y~~~~~~~ 280 (303)
T TIGR02649 202 GKALAIFGDTGPC-DAALDLAKGVDVMVHEATLDITMEAKANSRGHSSTRQAATLAREAGVGKLIITHVSSRYDDKGCQH 280 (303)
T ss_pred CcEEEEecCCCCh-HHHHHHhcCCCEEEEeccCChhhHHHHhhcCCCCHHHHHHHHHHcCCCEEEEEEeccccCCccHHH
Confidence 48999999985 5578889999999999998642 257999999999999999999999999998765433233
Q ss_pred HHHhhhhcCCCceEEcccCeEEec
Q 026783 208 ELLKLMETEGLDVQLSYDGLRVPV 231 (233)
Q Consensus 208 ~~~~~~~~~~~~v~~a~dg~~i~l 231 (233)
.+++..+.+. ++.+|+|||++.+
T Consensus 281 ~~~~~~~~~~-~~~~a~d~~~~~~ 303 (303)
T TIGR02649 281 LLRECRSIFP-ATELANDFTVFNV 303 (303)
T ss_pred HHHHHHHHCC-CCEecccccEEeC
Confidence 3444444443 6899999999874
No 3
>TIGR02651 RNase_Z ribonuclease Z. Processing of the 3-prime end of tRNA precursors may be the result of endonuclease or exonuclease activity, and differs in different species. Member of this family are ribonuclease Z, a tRNA 3-prime endonuclease that processes tRNAs to prepare for addition of CCA. In species where all tRNA sequences already have the CCA tail, such as E. coli, the need for such an enzyme is unclear. Protein similar to the E. coli enzyme, matched by TIGR02649, are designated ribonuclease BN.
Probab=99.94 E-value=3.3e-26 Score=189.39 Aligned_cols=189 Identities=22% Similarity=0.274 Sum_probs=142.9
Q ss_pred CCCCCCEEEeccCchhhcCChhHHHhhh--ccCccCceEEeChhhHHHHHhhcccccccccccCCCccceeeeeeeC-CC
Q 026783 30 RIRTIDAVIITHSHADAIGGLDDLRDWT--NNVQRHIPIYVAMRDFEVMKKTHYYLVDTSGIIPGAAVSELQFNIID-EE 106 (233)
Q Consensus 30 ~~~~i~~v~iTH~H~DH~ggl~~l~~~~--~~~~~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~ 106 (233)
++.++++|||||.|+||++|++.+.... ..+.++++||+|+.+.+.++....+... . ....+++..+. ++
T Consensus 48 ~~~~i~~IfiTH~H~DH~~Gl~~l~~~~~~~~~~~~i~Iy~p~~~~~~l~~~~~~~~~-~------~~~~~~~~~~~~~~ 120 (299)
T TIGR02651 48 SPMKIDRIFITHLHGDHILGLPGLLSTMSFQGRKEPLTIYGPPGIKEFIETSLRVSYT-Y------LNYPIKIHEIEEGG 120 (299)
T ss_pred CHHHCcEEEEECCchhhhcChHHHHHhhccCCCCceEEEECCccHHHHHHHHHHHccc-C------CCceEEEEEccCCC
Confidence 4568999999999999999999887532 2234478999999998887664321100 0 11124455554 44
Q ss_pred -ceEECCEEEEEEEecCCCCCceeEEEEc---------------------------------------------------
Q 026783 107 -PFTVQDLKITPLPVWHGAGYRSLGFRFG--------------------------------------------------- 134 (233)
Q Consensus 107 -~~~~~~~~i~~~~~~H~~g~~s~~~~i~--------------------------------------------------- 134 (233)
.+..++++|+++++.|.. +++||+++
T Consensus 121 ~~~~~~~~~v~~~~~~H~~--~~~gy~i~~~~~~~~~~~~k~~~~~l~~g~~~~~L~~g~~v~~~~G~~~~~~~~~~~~~ 198 (299)
T TIGR02651 121 LVFEDDGFKVEAFPLDHSI--PSLGYRFEEKDRPGKFDREKAKELGIPPGPLYGKLKRGETVTLIDGRIIDPEDVLGPPR 198 (299)
T ss_pred ceEecCCEEEEEEEcCCCC--ceEEEEEEECCCCCCcCHHHHHHCCCCcchhHHHhhCCCeEEeCCCeEEeHHHcccCCc
Confidence 588999999999999975 79999974
Q ss_pred ---cEEEcCCCCCCCcccccccCCCcEEEEcCcCCCC-----CCCCCCCHHHHHHHHHHcCCCeEEEEeeccCCChhHHH
Q 026783 135 ---NICYISDVSEIPEETYPFLQDCEILIMDALRPDR-----SSSTHFGLPRALEEVRKIQPKRTLFIGMMHLMDHEKVN 206 (233)
Q Consensus 135 ---~i~~~gD~~~~~~~~~~~~~~~d~li~e~~~~~~-----~~~~H~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~ 206 (233)
+++|+||++++ +++.++++++|+|++||++... ...+|++++++.+.+++.++++++++|+++.+.. ..
T Consensus 199 ~g~~i~y~gDt~~~-~~~~~~~~~~dlLi~E~~~~~~~~~~~~~~~H~t~~~a~~~~~~~~~k~lvltH~s~~~~~--~~ 275 (299)
T TIGR02651 199 KGRKIAYTGDTRPC-EEVIEFAKNADLLIHEATFLDEDKKLAKEYGHSTAAQAAEIAKEANVKRLILTHISPRYSD--EE 275 (299)
T ss_pred CCcEEEEecCCCCh-HHHHHHHcCCCEEEEECCCCchhHHHHhhcCCCCHHHHHHHHHHcCCCEEEEEecccccCC--hH
Confidence 59999999986 4577888999999999997742 3479999999999999999999999999987543 22
Q ss_pred HHHHhhhhcCCCceEEcccCeEEec
Q 026783 207 EELLKLMETEGLDVQLSYDGLRVPV 231 (233)
Q Consensus 207 ~~~~~~~~~~~~~v~~a~dg~~i~l 231 (233)
+.+.+..+.. .++.+|+|||++++
T Consensus 276 ~~~~~~~~~~-~~~~~a~dg~~~~~ 299 (299)
T TIGR02651 276 ELLEEAKKIF-PNTYIAEDFMEIEI 299 (299)
T ss_pred HHHHHHHHhC-CCcEEccCccEeeC
Confidence 2222332333 38999999999975
No 4
>PRK05184 pyrroloquinoline quinone biosynthesis protein PqqB; Provisional
Probab=99.94 E-value=6.8e-26 Score=186.94 Aligned_cols=188 Identities=19% Similarity=0.290 Sum_probs=135.1
Q ss_pred CCCCCCEEEeccCchhhcCChhHHHhhhccCccCceEEeChhhHHHHHhhcccccccccccCCCccceeeeeeeC-CCce
Q 026783 30 RIRTIDAVIITHSHADAIGGLDDLRDWTNNVQRHIPIYVAMRDFEVMKKTHYYLVDTSGIIPGAAVSELQFNIID-EEPF 108 (233)
Q Consensus 30 ~~~~i~~v~iTH~H~DH~ggl~~l~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~ 108 (233)
++.++|+|||||.|+||+.|++.+.. .++++||+++.+.+.+.+.+++ +.....+ ..++++.+. ++.+
T Consensus 77 ~~~~ldav~lTH~H~DHi~Gl~~l~~-----~~~l~Vyg~~~~~~~l~~~~~~-f~~~~~~-----~~~~~~~i~~~~~~ 145 (302)
T PRK05184 77 RDTPIAAVVLTDGQIDHTTGLLTLRE-----GQPFPVYATPAVLEDLSTGFPI-FNVLDHY-----GGVQRRPIALDGPF 145 (302)
T ss_pred CcccccEEEEeCCchhhhhChHhhcc-----CCCeEEEeCHHHHHHHHhcCCc-ccccccc-----cceeeEEecCCCce
Confidence 45689999999999999999998853 3479999999999988765331 2111001 234555564 5778
Q ss_pred EEC---CEEEEEEEecCCC-----------CCceeEEEEc------cEEEcCCCCCCCcccccccCCCcEEEEcCcCCCC
Q 026783 109 TVQ---DLKITPLPVWHGA-----------GYRSLGFRFG------NICYISDVSEIPEETYPFLQDCEILIMDALRPDR 168 (233)
Q Consensus 109 ~~~---~~~i~~~~~~H~~-----------g~~s~~~~i~------~i~~~gD~~~~~~~~~~~~~~~d~li~e~~~~~~ 168 (233)
+++ +++|+++++.|+. +..++||+++ +++|++|+...++.+.++++++|+|++||+++..
T Consensus 146 ~i~~~~~~~Vt~~~v~H~~~~~~~~~~~~h~~~~~gyri~~~~~g~~~~y~tD~~~~~~~~~~~~~gaDlli~da~~~~~ 225 (302)
T PRK05184 146 AVPGLPGLRFTAFPVPSKAPPYSPHRSDPEPGDNIGLRIEDRATGKRLFYAPGLAEVTDALRARLAGADCVLFDGTLWTD 225 (302)
T ss_pred EecCCCCcEEEEEEcCCCCCcccccccCCCCCCeEEEEEEecCCCcEEEEECCCCCCCHHHHHHHhcCCEEEEeCCCCcC
Confidence 886 8999999998752 1369999992 7999988876677788999999999999984321
Q ss_pred -------------CCCCCCCHHH---HHHHHHHcCCCeEEEEeeccCCChh-HHHHHHHhhhhcCCCceEEcccCeEEec
Q 026783 169 -------------SSSTHFGLPR---ALEEVRKIQPKRTLFIGMMHLMDHE-KVNEELLKLMETEGLDVQLSYDGLRVPV 231 (233)
Q Consensus 169 -------------~~~~H~~~~~---~~~~~~~~~~~~~~~~h~~~~~~~~-~~~~~~~~~~~~~~~~v~~a~dg~~i~l 231 (233)
...+|++.++ +++.+++.++++++++|++|..+.- +..+ ..+.... .++.+|+|||+|++
T Consensus 226 ~~~~~~g~~~~~~~~~~H~~~~~~~~~l~~~~~~~~k~l~ltHl~h~~~~~~~~~~-~~~~~~~--~~~~~A~DGm~i~l 302 (302)
T PRK05184 226 DEMIRAGVGTKTGRRMGHLPQSGPGGMIAALARLPIARKILIHINNTNPILDEDSP-ERAELEA--AGIEVAHDGMEIEL 302 (302)
T ss_pred HHHHhcccCccccccCCCCCCCChHHHHHHhhcCCCCcEEEEEcCCCChhhccCCH-HHHHHHh--CCCEEccCCcEEeC
Confidence 2457888665 4666667789999999999874321 1111 1121111 26899999999975
No 5
>TIGR02108 PQQ_syn_pqqB coenzyme PQQ biosynthesis protein B. This model describes coenzyme PQQ biosynthesis protein B, a gene required for the biosynthesis of pyrrolo-quinoline-quinone (coenzyme PQQ). PQQ is required for some glucose dehydrogenases and alcohol dehydrogenases. Note that this gene appears to be required for PQQ in biosynthesis in Methylobacterium extorquens (under the name pqqG) and in Klebiella pneumoniae but that the equivalent pqqV in Acinetobacter calcoaceticus is not necessary for heterologous expression of PQQ biosynthesis in E. coli. Based on this latter finding, it is suggested (Goosen, et al. 1989) that PqqB might be a transporter or a PQQ-dependent enzyme rather than a PQQ biosynthesis enzyme.
Probab=99.94 E-value=2.9e-25 Score=182.63 Aligned_cols=183 Identities=18% Similarity=0.311 Sum_probs=132.8
Q ss_pred CCCCCCEEEeccCchhhcCChhHHHhhhccCccCceEEeChhhHHHHHhhcccccccccccCCCccceeeeeeeC-CCce
Q 026783 30 RIRTIDAVIITHSHADAIGGLDDLRDWTNNVQRHIPIYVAMRDFEVMKKTHYYLVDTSGIIPGAAVSELQFNIID-EEPF 108 (233)
Q Consensus 30 ~~~~i~~v~iTH~H~DH~ggl~~l~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~ 108 (233)
++.+|++||+||.|.||+.|+..+.+. .+++||+++.+++.+++ ++ .+... ....+.++.+. ++.+
T Consensus 76 ~~~~IdaI~lTH~H~DHi~GL~~L~~~-----~~lpVya~~~t~~~L~~-~~-~~~~~------~~~~~~~~~i~~~~~~ 142 (302)
T TIGR02108 76 RHTPIAGVVLTDGEIDHTTGLLTLREG-----QPFTLYATEMVLQDLSD-NP-IFNVL------DHWNVRRQPIALNEKF 142 (302)
T ss_pred CcccCCEEEEeCCCcchhhCHHHHcCC-----CCceEEECHHHHHHHHh-CC-Ccccc------chhhccceEecCCCcE
Confidence 378999999999999999999999642 37999999999999975 32 22211 00112233333 4566
Q ss_pred EEC-----CEEEEEEEecCC-----------C-CCceeEEEEc------cEEEcCCCCCCCcccccccCCCcEEEEcCcC
Q 026783 109 TVQ-----DLKITPLPVWHG-----------A-GYRSLGFRFG------NICYISDVSEIPEETYPFLQDCEILIMDALR 165 (233)
Q Consensus 109 ~~~-----~~~i~~~~~~H~-----------~-g~~s~~~~i~------~i~~~gD~~~~~~~~~~~~~~~d~li~e~~~ 165 (233)
.++ +++|++||+.|+ . ...++||+++ +++|++|++..+++++++++++|++++|+++
T Consensus 143 ~~~~~~~~g~~I~~f~v~h~~~~~~~H~~~d~~~~~~~Gy~i~~~~~g~~~~y~tD~g~~~~~~~~~l~~~d~liida~~ 222 (302)
T TIGR02108 143 EFRIVARPGLEFTPFAVPGKAPLYSEHRAGDPHPGDTLGLKIEDGTTGKRLFYIPGCAEITDDLKARMAGADLVFFDGTL 222 (302)
T ss_pred EecccccCCEEEEEEEcCCCCCccccccccCCCCCCcEEEEEEeCCCCcEEEEECCCCCCCHHHHHHHhCCCEEEEeCCC
Confidence 553 599999999943 1 1379999996 3999999998888899999999999999984
Q ss_pred -CC------------CCCCCCCCHH---HHHHHHHHcCCCeEEEEeeccCCC----hhHHHHHHHhhhhcCCCceEEccc
Q 026783 166 -PD------------RSSSTHFGLP---RALEEVRKIQPKRTLFIGMMHLMD----HEKVNEELLKLMETEGLDVQLSYD 225 (233)
Q Consensus 166 -~~------------~~~~~H~~~~---~~~~~~~~~~~~~~~~~h~~~~~~----~~~~~~~~~~~~~~~~~~v~~a~d 225 (233)
.. .+..+|++.+ ++++.+...++++++++|++|... +......++. .++++|+|
T Consensus 223 ~~d~e~l~~g~ypri~~~~gHls~~~~~~al~~~~~~~~~~~~l~Hl~h~~~~~~~~~~~~~~~~~------~~~~~ayD 296 (302)
T TIGR02108 223 WRDDEMIRAGVGTKTGRRMGHVSMSGEGGSLAVLADLEIARKVLIHINNTNPILDEDSPERAEVEA------AGWEVAYD 296 (302)
T ss_pred CCcHHHHhcCCCCCcCCCCCCCCccchHHHHHHhhcCCCCcEEEEecCCCCcCCCCCCHHHHHHHH------cCCEEecC
Confidence 21 2456788776 455566667899999999999763 1111222221 27999999
Q ss_pred CeEEec
Q 026783 226 GLRVPV 231 (233)
Q Consensus 226 g~~i~l 231 (233)
||+|.+
T Consensus 297 G~~~~l 302 (302)
T TIGR02108 297 GMEIVL 302 (302)
T ss_pred CcEEeC
Confidence 999975
No 6
>PRK11244 phnP carbon-phosphorus lyase complex accessory protein; Provisional
Probab=99.93 E-value=1e-24 Score=176.03 Aligned_cols=179 Identities=27% Similarity=0.497 Sum_probs=132.5
Q ss_pred cCCCCCCEEEeccCchhhcCChhHHHhhhccCccCceEEeChhhHHHHHhhcccccccccccCCCccceeee-eee-CCC
Q 026783 29 ARIRTIDAVIITHSHADAIGGLDDLRDWTNNVQRHIPIYVAMRDFEVMKKTHYYLVDTSGIIPGAAVSELQF-NII-DEE 106 (233)
Q Consensus 29 ~~~~~i~~v~iTH~H~DH~ggl~~l~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~g~~~~~~~~-~~~-~~~ 106 (233)
....+||+|||||.|.||++|+..+... ..++++||+++.+... ..... .++ ..++ ..+ +++
T Consensus 62 ~~~~~i~~i~iTH~H~DHi~gl~~l~~~---~~~~i~i~~~~~~~~~-~~~~~--------~~~----~~~~~~~l~~~~ 125 (250)
T PRK11244 62 FPPGSLQQILLTHYHMDHVQGLFPLRWG---VGDPIPVYGPPDPEGC-DDLFK--------HPG----ILDFSHPLEPFE 125 (250)
T ss_pred CCcccCCEEEEccCchhhhccHHHHHhh---cCCceeEEeCCchhhH-HHHhc--------Ccc----ccccccccCCCC
Confidence 3467999999999999999999877421 1247899999875422 11110 001 1122 223 468
Q ss_pred ceEECCEEEEEEEecCCCCCceeEEEEc----cEEEcCCCCCCCccccccc--CCCcEEEEcCcCCCC--CCCCCCCHHH
Q 026783 107 PFTVQDLKITPLPVWHGAGYRSLGFRFG----NICYISDVSEIPEETYPFL--QDCEILIMDALRPDR--SSSTHFGLPR 178 (233)
Q Consensus 107 ~~~~~~~~i~~~~~~H~~g~~s~~~~i~----~i~~~gD~~~~~~~~~~~~--~~~d~li~e~~~~~~--~~~~H~~~~~ 178 (233)
.+++++++|+++|+.|+. +++||+++ +++|+||++++++.+.+++ .++|++++|+++... ...+|+++++
T Consensus 126 ~~~~~~~~I~~~~~~H~~--~s~g~~i~~~~~~i~ysgDt~~~~~~~~~~~~~~~~Dlli~e~~~~~~~~~~~~H~~~~~ 203 (250)
T PRK11244 126 PFDLGGLQVTPLPLNHSK--LTFGYLLETAHSRVAYLTDTVGLPEDTLKFLRNNQPDLLVLDCSHPPQEDAPRNHNDLTT 203 (250)
T ss_pred CeeECCEEEEEEeeCCCc--ceeEEEEecCCeEEEEEcCCCCCCHHHHHHHhcCCCCEEEEeCcCCCCCCCCCCCCCHHH
Confidence 899999999999999986 69999996 8999999998766555554 479999999997643 3578999999
Q ss_pred HHHHHHHcCCCeEEEEeeccCCChhHHHHHHHhhhhcCCCceEEcccCeEEec
Q 026783 179 ALEEVRKIQPKRTLFIGMMHLMDHEKVNEELLKLMETEGLDVQLSYDGLRVPV 231 (233)
Q Consensus 179 ~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~~~v~~a~dg~~i~l 231 (233)
+.+++++.++++++++|+.+..+ +.. .+. +....++.+|+|||++++
T Consensus 204 a~~~a~~~~~k~lvltH~~~~~~--~~~---~~~-~~~~~~~~~a~DG~~i~~ 250 (250)
T PRK11244 204 ALAIIEVLRPPRVILTHISHQLD--AWL---MEN-AALPSGVEVAYDGMEIGL 250 (250)
T ss_pred HHHHHHhcCCceEEEEcccCCcc--hhh---hhh-hhcCCceEEecCccEeeC
Confidence 99999999999999999977542 111 122 223348999999999975
No 7
>PRK02126 ribonuclease Z; Provisional
Probab=99.93 E-value=4.3e-24 Score=177.88 Aligned_cols=196 Identities=18% Similarity=0.239 Sum_probs=143.5
Q ss_pred cceeeEEEeeecCccchhhh-----hhHhcCCCCCCEEEeccCchhhcCChhHHHhhhccCccCceEEeChhhHHHHHhh
Q 026783 5 FSTIALFVGFLPMGTCLIIT-----SCISARIRTIDAVIITHSHADAIGGLDDLRDWTNNVQRHIPIYVAMRDFEVMKKT 79 (233)
Q Consensus 5 ~~~~~~~~~~~~~~~~~l~~-----~~~~~~~~~i~~v~iTH~H~DH~ggl~~l~~~~~~~~~~~~v~~~~~~~~~l~~~ 79 (233)
..++++++....++..+++| ++...++.+|++||+||.|+||++|++.|..+...+.++++||+++.+.+.+...
T Consensus 14 ~~dn~~~l~~~~~~~~iLiD~G~~~~l~~~~~~~i~~I~iTH~H~DHi~Gl~~l~~~~~~r~~~l~iygp~~~~~~l~~~ 93 (334)
T PRK02126 14 FDDPGLYVDFLFERRALLFDLGDLHHLPPRELLRISHIFVSHTHMDHFIGFDRLLRHCLGRPRRLRLFGPPGFADQVEHK 93 (334)
T ss_pred CCCcEEEEEECCCCeEEEEcCCCHHHHhhcCCCccCEEEEcCCChhHhCcHHHHHHHhccCCCCeEEEECHHHHHHHHHH
Confidence 45566666654456666655 4455678899999999999999999999987654455679999999999999876
Q ss_pred cc-ccccccccc-CCCccceee----------e-------------eee-CCCceEECCEEEEEEEecCCCCCceeEEEE
Q 026783 80 HY-YLVDTSGII-PGAAVSELQ----------F-------------NII-DEEPFTVQDLKITPLPVWHGAGYRSLGFRF 133 (233)
Q Consensus 80 ~~-~~~~~~~~~-~g~~~~~~~----------~-------------~~~-~~~~~~~~~~~i~~~~~~H~~g~~s~~~~i 133 (233)
+. +.+.....+ ++....... + ... ++..+..++++|+++|+.|+. +|+||++
T Consensus 94 ~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~a~~~~H~v--p~~gy~~ 171 (334)
T PRK02126 94 LAGYTWNLVENYPTTFRVHEVELHDGRIRRALFSCRRAFAREAEEELSLPDGVLLDEPWFRVRAAFLDHGI--PCLAFAL 171 (334)
T ss_pred hccccccCcccCCCceEEEEEEccCccceeeeecccccccccccccccCCCCeEEeCCCEEEEEEEccCCC--ceeEEEE
Confidence 54 211100000 000000000 0 001 123466789999999999987 8999987
Q ss_pred c-----------------------------------------------------------------------cEEEcCCC
Q 026783 134 G-----------------------------------------------------------------------NICYISDV 142 (233)
Q Consensus 134 ~-----------------------------------------------------------------------~i~~~gD~ 142 (233)
+ +++|+|||
T Consensus 172 ~e~~~~~~~~ek~~~~gi~~g~~~~~Lk~~~~~~~~~~~~v~~~~~~g~~~~~~~~~~~~~~~~~~~~~~g~~v~y~gDT 251 (334)
T PRK02126 172 EEKAHINIDKNRLAELGLPPGPWLRELKHAVLRGEPDDTPIRVLWRDGGGEHERVRPLGELKERVLRIEPGQKIGYVTDI 251 (334)
T ss_pred EecCCcCcCHHHHHHcCCCCChHHHHHHhhhhccCCCCceEEeeccCCCccceeEecHHHHHHHhccCCCCCEEEEECCC
Confidence 4 48999999
Q ss_pred CCCCc---ccccccCCCcEEEEcCcCCCC-----CCCCCCCHHHHHHHHHHcCCCeEEEEeeccCCCh
Q 026783 143 SEIPE---ETYPFLQDCEILIMDALRPDR-----SSSTHFGLPRALEEVRKIQPKRTLFIGMMHLMDH 202 (233)
Q Consensus 143 ~~~~~---~~~~~~~~~d~li~e~~~~~~-----~~~~H~~~~~~~~~~~~~~~~~~~~~h~~~~~~~ 202 (233)
+++++ .+.++++++|+|++||++... ...+|++++++.+++++.++++++++|+++.+..
T Consensus 252 ~~~~~~~~~l~~~a~~aDlLI~Eat~~~~~~~~a~~~gH~t~~~a~~lA~~a~vk~LvLtH~sp~~~~ 319 (334)
T PRK02126 252 GYTEENLARIVELAAGVDLLFIEAVFLDEDAEKARRKNHLTARQAGRLAREAGVKRLLPFHFSPRYQG 319 (334)
T ss_pred CCCcccHHHHHHHHcCCCEEEEEcccChHHhhhcccCCCCCHHHHHHHHHHcCCCEEEEEecCcccCC
Confidence 99874 367778899999999998742 3578999999999999999999999999998654
No 8
>TIGR03307 PhnP phosphonate metabolism protein PhnP. This family of proteins found in operons encoding phosphonate C-P lyase systems as is observed in E. coli and is a member of the metallo-beta-lactamase superfamily (pfam00753). As defined by this model, all instances of this protein are associated with the C-P lyase, but not all genomes containing the C-P lyase system contain phnP.
Probab=99.92 E-value=5.9e-24 Score=170.37 Aligned_cols=179 Identities=27% Similarity=0.489 Sum_probs=129.8
Q ss_pred cCCCCCCEEEeccCchhhcCChhHHHhhhccCccCceEEeChhhHHHHHhhcccccccccccCCCccceeeeeeeCCCce
Q 026783 29 ARIRTIDAVIITHSHADAIGGLDDLRDWTNNVQRHIPIYVAMRDFEVMKKTHYYLVDTSGIIPGAAVSELQFNIIDEEPF 108 (233)
Q Consensus 29 ~~~~~i~~v~iTH~H~DH~ggl~~l~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~ 108 (233)
....+|++|||||.|+||++|+..+... ..++++||+++.+... ..... ..+. .........++.+
T Consensus 52 ~~~~~id~i~iTH~H~DHi~gl~~l~~~---~~~~~~v~~~~~~~~~-~~~~~--------~~~~--~~~~~~~~~~~~~ 117 (238)
T TIGR03307 52 FPPGSLQAILLTHYHMDHVQGLFPLRWG---VGEPIPVYGPPDEEGC-DDLFK--------HPGI--LDFSKPLEAFEPF 117 (238)
T ss_pred cCccCCCEEEEecCchhhhcchHHHHHh---cCCceeEEeCchHhhH-HHHhc--------Cccc--ccccccccCCceE
Confidence 3567899999999999999999776432 1247899999876432 22110 0010 0011112246789
Q ss_pred EECCEEEEEEEecCCCCCceeEEEEc----cEEEcCCCCCCCcccccccC--CCcEEEEcCcCCCC--CCCCCCCHHHHH
Q 026783 109 TVQDLKITPLPVWHGAGYRSLGFRFG----NICYISDVSEIPEETYPFLQ--DCEILIMDALRPDR--SSSTHFGLPRAL 180 (233)
Q Consensus 109 ~~~~~~i~~~~~~H~~g~~s~~~~i~----~i~~~gD~~~~~~~~~~~~~--~~d~li~e~~~~~~--~~~~H~~~~~~~ 180 (233)
.+++++|+++|+.|+. .++||+++ +++|+||+.++++.+.+.++ ++|++++|+++... ...+|++++++.
T Consensus 118 ~~~~~~i~~~~~~H~~--~~~g~~i~~~~~~i~y~gDt~~~~~~~~~~~~~~~~D~li~e~~~~~~~~~~~~H~~~~~~~ 195 (238)
T TIGR03307 118 DLGGLRVTPLPLVHSK--LTFGYLLETDGQRVAYLTDTAGLPPDTEAFLKNHPLDVLILDCSHPPQSDAPRNHNDLTRAL 195 (238)
T ss_pred EECCEEEEEEecCCCC--cceEEEEecCCcEEEEEecCCCCCHHHHHHHhcCCCCEEEEeCCcCccccCCCCcCCHHHHH
Confidence 9999999999999986 69999997 89999999887665666654 69999999997532 246899999999
Q ss_pred HHHHHcCCCeEEEEeeccCCChhHHHHHHHhhhhcCCCceEEcccCeEE
Q 026783 181 EEVRKIQPKRTLFIGMMHLMDHEKVNEELLKLMETEGLDVQLSYDGLRV 229 (233)
Q Consensus 181 ~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~~~v~~a~dg~~i 229 (233)
++++++++++++++|+++.... . +.+... ...++.+++|||+|
T Consensus 196 ~~~~~~~~~~lil~H~~~~~~~--~---~~~~~~-~~~~~~~a~DG~~~ 238 (238)
T TIGR03307 196 AINEQLRPKQVILTHISHQLDA--W---LMENPD-LPSGVAVGYDGQTL 238 (238)
T ss_pred HHHHHcCCCEEEEEecccccch--H---HHhhhh-cCCceEEecccccC
Confidence 9999999999999999876531 1 111111 22378999999985
No 9
>PRK00055 ribonuclease Z; Reviewed
Probab=99.90 E-value=6.5e-23 Score=167.21 Aligned_cols=197 Identities=18% Similarity=0.119 Sum_probs=124.5
Q ss_pred CCCCCCEEEeccCchhhcCChhHHHhhh--ccCccCceEEeChhhHHHHHhhccc--ccccccccCCCccceeeee----
Q 026783 30 RIRTIDAVIITHSHADAIGGLDDLRDWT--NNVQRHIPIYVAMRDFEVMKKTHYY--LVDTSGIIPGAAVSELQFN---- 101 (233)
Q Consensus 30 ~~~~i~~v~iTH~H~DH~ggl~~l~~~~--~~~~~~~~v~~~~~~~~~l~~~~~~--~~~~~~~~~g~~~~~~~~~---- 101 (233)
++.++++||+||.|+||++|++.+.... ..+.++++||+++.+.+.+...... ++.......... ..+...
T Consensus 50 ~~~~i~~i~lTH~H~DHi~Gl~~l~~~~~~~~~~~~l~iy~p~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 128 (270)
T PRK00055 50 KPRKIDKIFITHLHGDHIFGLPGLLSTRSLSGRTEPLTIYGPKGIKEFVETLLRASGSLGYRIAEKDKP-GKLDAEKLKA 128 (270)
T ss_pred CHHHCCEEEEeCCCchhhCcHHHHHHHhhhcCCCceEEEECCccHHHHHHHHHHHhhceeEEEEEcCCC-CCCCHHHHHH
Confidence 4578999999999999999999887432 2234578999999888777543210 000000000000 000000
Q ss_pred -ee-CCCce-EE-CCEEEEEEEecCCCCCceeEEEEc----cEEEcCCCCCCCcccccccCCCcEEEEcCcCCCCC----
Q 026783 102 -II-DEEPF-TV-QDLKITPLPVWHGAGYRSLGFRFG----NICYISDVSEIPEETYPFLQDCEILIMDALRPDRS---- 169 (233)
Q Consensus 102 -~~-~~~~~-~~-~~~~i~~~~~~H~~g~~s~~~~i~----~i~~~gD~~~~~~~~~~~~~~~d~li~e~~~~~~~---- 169 (233)
.+ .+..+ ++ .+.++.. ..|..-.++++|+++ +++|+||+++++ .+.+.++++|++++||++....
T Consensus 129 ~~~~~~~~~~~~~~g~~~~~--~~~~~i~~~~~~~~~~~g~~~~y~~Dt~~~~-~~~~~~~~~d~li~E~~~~~~~~~~~ 205 (270)
T PRK00055 129 LGVPPGPLFGKLKRGEDVTL--EDGRIINPADVLGPPRKGRKVAYCGDTRPCE-ALVELAKGADLLVHEATFGDEDEELA 205 (270)
T ss_pred CCCCCCchHHHhhCCCeEEe--CCCcEEeHHHeeccCCCCcEEEEeCCCCCcH-HHHHHhCCCCEEEEeccCCcchhhHH
Confidence 00 00000 00 0112221 112210146788885 799999999874 5778889999999999987532
Q ss_pred -CCCCCCHHHHHHHHHHcCCCeEEEEeeccCCChhHHHHHHHhhhhcCCCceEEcccCeEEecc
Q 026783 170 -SSTHFGLPRALEEVRKIQPKRTLFIGMMHLMDHEKVNEELLKLMETEGLDVQLSYDGLRVPVM 232 (233)
Q Consensus 170 -~~~H~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~~~v~~a~dg~~i~l~ 232 (233)
..+|++++++.+.++++++++++++|+++.... ...+..++..+.. .++.+|+|||+++|+
T Consensus 206 ~~~~H~~~~~a~~~~~~~~~~~~vl~H~~~~~~~-~~~~~~~~~~~~~-~~v~~a~Dg~~i~l~ 267 (270)
T PRK00055 206 KEYGHSTARQAAEIAKEAGVKRLILTHFSPRYTG-DPEELLKEAREIF-PNTELAEDLMRVEVP 267 (270)
T ss_pred hhcCCCCHHHHHHHHHHcCCCEEEEEeeccccCC-CHHHHHHHHHHHc-CCcEEccCCcEEEec
Confidence 478999999999999999999999999987642 1112222222233 389999999999985
No 10
>PRK00685 metal-dependent hydrolase; Provisional
Probab=99.89 E-value=7.3e-22 Score=157.27 Aligned_cols=196 Identities=16% Similarity=0.213 Sum_probs=138.6
Q ss_pred eEEEeeecCccchhhhhhHh--------cCCCCCCEEEeccCchhhcCChhHHHhhhccCccCceEEeChhhHHHHHhhc
Q 026783 9 ALFVGFLPMGTCLIITSCIS--------ARIRTIDAVIITHSHADAIGGLDDLRDWTNNVQRHIPIYVAMRDFEVMKKTH 80 (233)
Q Consensus 9 ~~~~~~~~~~~~~l~~~~~~--------~~~~~i~~v~iTH~H~DH~ggl~~l~~~~~~~~~~~~v~~~~~~~~~l~~~~ 80 (233)
+++.+. .++..+++|+... .+..++|+|++||.|.||++++..+... .++++|+++.+.+.+...
T Consensus 9 s~~li~-~~~~~iLiDP~~~~~~~~~~~~~~~~id~vliTH~H~DH~~~~~~~~~~-----~~~~v~~~~~~~~~~~~~- 81 (228)
T PRK00685 9 SAFLIE-TGGKKILIDPFITGNPLADLKPEDVKVDYILLTHGHGDHLGDTVEIAKR-----TGATVIANAELANYLSEK- 81 (228)
T ss_pred eEEEEE-ECCEEEEECCCCCCCCCCCCChhcCcccEEEeCCCCccccccHHHHHHh-----CCCEEEEeHHHHHHHHhc-
Confidence 344444 4556677774221 1222899999999999999998776542 268999998877766542
Q ss_pred ccccccccccCCCccceeeeeee-CCCceEECCEEEEEEEecCCCCC----------ceeEEEEc----cEEEcCCCCCC
Q 026783 81 YYLVDTSGIIPGAAVSELQFNII-DEEPFTVQDLKITPLPVWHGAGY----------RSLGFRFG----NICYISDVSEI 145 (233)
Q Consensus 81 ~~~~~~~~~~~g~~~~~~~~~~~-~~~~~~~~~~~i~~~~~~H~~g~----------~s~~~~i~----~i~~~gD~~~~ 145 (233)
+.. +...+ .++.+++++++|+++|+.|+... .+.||+++ +++|+||++++
T Consensus 82 -----------~~~----~~~~~~~~~~~~~~~~~i~~~p~~H~~~~~~~~~~~~~~~~~g~~i~~~~~~i~~~GDt~~~ 146 (228)
T PRK00685 82 -----------GVE----KTHPMNIGGTVEFDGGKVKLTPALHSSSFIDEDGITYLGNPTGFVITFEGKTIYHAGDTGLF 146 (228)
T ss_pred -----------CCC----ceeeccCCCcEEECCEEEEEEEEEcCCCCcCCCCcccCCCceEEEEEECCeEEEEecCccch
Confidence 100 22334 36789999999999999997632 15899996 89999999987
Q ss_pred Cc-ccccccCCCcEEEEcCcCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEeeccCCChhHHHHHHHhhhhcCCCceEEcc
Q 026783 146 PE-ETYPFLQDCEILIMDALRPDRSSSTHFGLPRALEEVRKIQPKRTLFIGMMHLMDHEKVNEELLKLMETEGLDVQLSY 224 (233)
Q Consensus 146 ~~-~~~~~~~~~d~li~e~~~~~~~~~~H~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~~~v~~a~ 224 (233)
++ ..+....++|++++.+. ...|++.+++.++++++++++++++|+..........+++++..++.+.++.++.
T Consensus 147 ~~~~~~~~~~~~D~~~~~~~-----~~~h~~~~ea~~~~~~~~~k~~v~~H~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (228)
T PRK00685 147 SDMKLIGELHKPDVALLPIG-----DNFTMGPEDAALAVELIKPKIVIPMHYNTFPLIEQDPEKFKALVEGLGTKVVILK 221 (228)
T ss_pred hHHHHHHHhhCCCEEEEecC-----CccccCHHHHHHHHHhhCCCEEEEeccCCCcCCcCCHHHHHHHHHhcCCcEEECC
Confidence 64 22222346899988643 2469999999999999999999999987543211223344444444677999999
Q ss_pred cCeEEec
Q 026783 225 DGLRVPV 231 (233)
Q Consensus 225 dg~~i~l 231 (233)
+|+++++
T Consensus 222 ~G~~~~~ 228 (228)
T PRK00685 222 PGESIEL 228 (228)
T ss_pred CCCEeeC
Confidence 9999875
No 11
>COG1234 ElaC Metal-dependent hydrolases of the beta-lactamase superfamily III [General function prediction only]
Probab=99.89 E-value=1.5e-21 Score=160.01 Aligned_cols=200 Identities=23% Similarity=0.195 Sum_probs=129.3
Q ss_pred CCCCCCEEEeccCchhhcCChhHHHhh--hccCccCceEEeChhhHHHHHhhcccc-----ccccc-ccCCCccceeeee
Q 026783 30 RIRTIDAVIITHSHADAIGGLDDLRDW--TNNVQRHIPIYVAMRDFEVMKKTHYYL-----VDTSG-IIPGAAVSELQFN 101 (233)
Q Consensus 30 ~~~~i~~v~iTH~H~DH~ggl~~l~~~--~~~~~~~~~v~~~~~~~~~l~~~~~~~-----~~~~~-~~~g~~~~~~~~~ 101 (233)
.+.+|++|||||.|.||+.|++.+... +..+..++.||+|+...+.+......- +.... ...+ ....+...
T Consensus 50 ~~~~i~~IfITH~H~DHi~gL~~ll~~~~~~~~~~~l~iygP~g~~~~~~~~~~~~~~~~~~~i~~~e~~~-~~~~v~~~ 128 (292)
T COG1234 50 PPRKIDAIFITHLHGDHIAGLPGLLVSRSFRGRREPLKIYGPPGIKEFVETSLRLSYSKLTYEIIGHEIEE-DAFEVEAL 128 (292)
T ss_pred ChhhccEEEeeccccchhcCcHHHHHHhhccCCCCceeEECCcchhhhhhhhhhhcccccceEEEEEEecc-CceEEEEE
Confidence 455899999999999999999987653 333444789999988877766543110 00000 0000 00000000
Q ss_pred eeC------C----CceEEC------------CEEEEEEEecCCCC--CceeEEEEc------cEEEcCCCCCCCccccc
Q 026783 102 IID------E----EPFTVQ------------DLKITPLPVWHGAG--YRSLGFRFG------NICYISDVSEIPEETYP 151 (233)
Q Consensus 102 ~~~------~----~~~~~~------------~~~i~~~~~~H~~g--~~s~~~~i~------~i~~~gD~~~~~~~~~~ 151 (233)
.++ + +....+ +..++.++..|+.. ..+.++++. +++|+|||.+++ ++.+
T Consensus 129 ~~~h~~~~~~y~~~e~~~~~~~~~~~~~~~~~g~~~~~l~~~h~~~~~~~~~~~~~~~~~~G~~v~ysGDT~p~~-~~~~ 207 (292)
T COG1234 129 ELDHGVPALGYRIEEPDRPGRFDAEKLKGLPPGPLITALKAGHPVEERVITPADRIGEPRKGKSVVYSGDTRPCD-ELID 207 (292)
T ss_pred ecCCCccccceeeecCCCcCcCCHHHhcCCCCchHHHHHhCCCceeeeecCHHHhccccCCCcEEEEECCCCCCH-HHHH
Confidence 000 0 000111 34555666666621 023333332 899999999984 5888
Q ss_pred ccCCCcEEEEcCcCCCC-----CCCCCCCHHHHHHHHHHcCCCeEEEEeeccCCChhHHHHHHHhhhhcCCCceEEcccC
Q 026783 152 FLQDCEILIMDALRPDR-----SSSTHFGLPRALEEVRKIQPKRTLFIGMMHLMDHEKVNEELLKLMETEGLDVQLSYDG 226 (233)
Q Consensus 152 ~~~~~d~li~e~~~~~~-----~~~~H~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~~~v~~a~dg 226 (233)
+.+++|+|++||++... ...+|++.+|+.+.+++.++++++++|++.++. ....+.+++..+....++.+++|+
T Consensus 208 ~a~~aDlLiHEat~~~~~~~~a~~~~HsT~~eAa~iA~~A~vk~LiLtH~s~ry~-~~~~~~~~ea~~~f~~~~~~a~D~ 286 (292)
T COG1234 208 LAKGADLLIHEATFEDDLEDLANEGGHSTAEEAAEIAKEAGVKKLILTHFSPRYP-KDDEELLKEARAIFPGETIVARDG 286 (292)
T ss_pred HhcCCCEEEEeccCCchhhhHHhhcCCCCHHHHHHHHHHcCCCeEEEEeeccccc-chHHHHHHHHHHhCCCceEEeccc
Confidence 88999999999998642 233499999999999999999999999999985 222233344444444479999999
Q ss_pred eEEecc
Q 026783 227 LRVPVM 232 (233)
Q Consensus 227 ~~i~l~ 232 (233)
+++++.
T Consensus 287 ~~~~v~ 292 (292)
T COG1234 287 LVFEVP 292 (292)
T ss_pred eEEecC
Confidence 999874
No 12
>TIGR02650 RNase_Z_T_toga ribonuclease Z, Thermotoga type. Members of this protein family are ribonuclease Z as found in the genus Thermotoga, where the enzyme cleaves after the CCA, in contrast to the activities characterized for other enzymes also designated ribonuclease Z. In other systems, cleavage occurs 5-prime to the location of the CCA sequence, and CCA is added subsequently. A species may lack ribonuclease Z if all tRNA genes encode the CCA sequence, or if the CCA is exposed by exonuclease activity rather than endonuclease activity. Note that members of this sequence family differ considerably from the majority of RNase Z sequences.
Probab=99.88 E-value=8.4e-22 Score=157.59 Aligned_cols=185 Identities=14% Similarity=0.128 Sum_probs=131.5
Q ss_pred hhHhcCCCCCCEEEeccCchhhcCChhHHHh---hhccCccCceEEeChhhHHHHHhhcccccccccccCCCccceeeee
Q 026783 25 SCISARIRTIDAVIITHSHADAIGGLDDLRD---WTNNVQRHIPIYVAMRDFEVMKKTHYYLVDTSGIIPGAAVSELQFN 101 (233)
Q Consensus 25 ~~~~~~~~~i~~v~iTH~H~DH~ggl~~l~~---~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~g~~~~~~~~~ 101 (233)
..++.....++++||||.|.||++|++.+.. +...+.++..||+|+.+.+.++..... +...... .....++.
T Consensus 32 ~~l~~k~~~l~~vFlTH~H~DHi~gL~~~~~~~~~~~~~~~p~~Vy~P~g~~~~ve~~~~~-~~~~~~~---~~~~~~~~ 107 (277)
T TIGR02650 32 TLGGKKVAAFKVFFLHGGHDDHAAGLGGVNIINNGGGDDEEKLDDFFPKEGNAAEEETSEF-IKAANED---LFFFFNHH 107 (277)
T ss_pred hHHhhhHhhcCEEEeecCchhhhcchHHHHhhhhhcccCCCCCeEECCcchhHHHHHHHHH-HHHhhhh---hccCcccC
Confidence 5666778899999999999999999976643 233355678999999877766632211 0100000 11123334
Q ss_pred eeCC-CceEEC----CEEEEEEEecCC-CCCceeEEEE------------------------------------ccEEEc
Q 026783 102 IIDE-EPFTVQ----DLKITPLPVWHG-AGYRSLGFRF------------------------------------GNICYI 139 (233)
Q Consensus 102 ~~~~-~~~~~~----~~~i~~~~~~H~-~g~~s~~~~i------------------------------------~~i~~~ 139 (233)
..++ +.+... +..|+++++.|. .+.+|+||.+ .+++|+
T Consensus 108 ~~~~~e~~~~r~~~~~~~V~~f~t~H~v~~~~s~GY~~~~~r~KLK~E~~~l~~~eI~~l~~~gg~~~t~e~~~~~vvys 187 (277)
T TIGR02650 108 LEEEDERFFLDAAGFFKRVQPFFRKHHASEESFFGHHFEERRKKKEEEFGGDDKKEARLLKEEGGDDFTREEHHKILLII 187 (277)
T ss_pred CCCCCcEEEeecCCccEEEecCccccccCccCccCeEEEEEeecchHhHcCCCHHHHHHHHHhCCccccccccCcEEEEe
Confidence 4444 334443 278999999999 4557999998 079999
Q ss_pred CCCCCCCcccccccCCCcEEEEcCcCCCC---CCCCCCCHHHHHHHHHHcCCCeEEEEeeccCCChhHHHHHHHhhhhcC
Q 026783 140 SDVSEIPEETYPFLQDCEILIMDALRPDR---SSSTHFGLPRALEEVRKIQPKRTLFIGMMHLMDHEKVNEELLKLMETE 216 (233)
Q Consensus 140 gD~~~~~~~~~~~~~~~d~li~e~~~~~~---~~~~H~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~~~~~ 216 (233)
|||.+++. +.+.++|+|++||++... ...+|++..++.+.+++.+.++++++|++..+..+...+.++++.++.
T Consensus 188 GDT~~~~~---~~a~~adlLIhEaTf~d~~~~~~~gH~t~~eaa~~A~~a~vk~LiLtH~Ssry~~~~~~~~~~~~~~~~ 264 (277)
T TIGR02650 188 GDDLAADD---EEEEGGEELIHECCFFDDADDRRKKHAAADDEMEESKKAAGKKKIILHHISRRIIRILKSIIKKREEEM 264 (277)
T ss_pred CCCCCCCh---HHhcCCCEEEEecccccccccccCCCCCHHHHHHHHHHcCCCEEEEEeecccccHHHHHHHHHHHHhhc
Confidence 99998853 667899999999998753 246899999999999999999999999999876544445555554443
No 13
>PF12706 Lactamase_B_2: Beta-lactamase superfamily domain; PDB: 3BV6_F 1WW1_A 2E7Y_A 3RPC_D 3ZWF_A 3JXP_A 1XTO_A 2CBN_A 3G1P_B 3P2U_A ....
Probab=99.85 E-value=2.4e-20 Score=144.64 Aligned_cols=152 Identities=29% Similarity=0.450 Sum_probs=115.1
Q ss_pred CCCCEEEeccCchhhcCChhHHHhhhccCccCceEEeChhhHHHHHh--hcccccccccccCCCccceeeeeeeC-CCce
Q 026783 32 RTIDAVIITHSHADAIGGLDDLRDWTNNVQRHIPIYVAMRDFEVMKK--THYYLVDTSGIIPGAAVSELQFNIID-EEPF 108 (233)
Q Consensus 32 ~~i~~v~iTH~H~DH~ggl~~l~~~~~~~~~~~~v~~~~~~~~~l~~--~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~ 108 (233)
.++|+|||||.|.||+.|++.+........+ +||+++.+.+.+.. .... . ..+ ........... ++.+
T Consensus 28 ~~id~v~iTH~H~DH~~gl~~l~~~~~~~~~--~i~~~~~~~~~l~~~~~~~~--~---~~~--~~~~~~~~~~~~~~~~ 98 (194)
T PF12706_consen 28 PDIDAVFITHSHPDHIAGLPSLIPAWAKHPK--PIYGPPETKEFLREYKFGIL--D---LYP--EEDNFDIIEISPGDEF 98 (194)
T ss_dssp GCEEEEE-SBSSHHHHTTHHHHHHHHHHCTT--EEEECHHHHHHHHHHHHTHH--T---TCC--TTSGEEEEEECTTEEE
T ss_pred CCCCEEEECCCCccccCChHHHHHHhhcccc--eEEecHHHHHHHHhhhcccc--c---ccc--cccceeEEEeccCceE
Confidence 4999999999999999999998865432212 89999999999884 2110 0 000 11123444454 5789
Q ss_pred EECCEEEEEEEecCCCCCcee--EEEEc----cEEEcCCCCCCCcccccccCCCcEEEEcCcCC------CCCCCCCCCH
Q 026783 109 TVQDLKITPLPVWHGAGYRSL--GFRFG----NICYISDVSEIPEETYPFLQDCEILIMDALRP------DRSSSTHFGL 176 (233)
Q Consensus 109 ~~~~~~i~~~~~~H~~g~~s~--~~~i~----~i~~~gD~~~~~~~~~~~~~~~d~li~e~~~~------~~~~~~H~~~ 176 (233)
++++++|+++|+.|..+..+. ||+++ +++|+||+.+ + + +.++++|++++||+.. ......|+++
T Consensus 99 ~~~~~~i~~~~~~H~~~~~~~~~g~~i~~~~~~i~~~gD~~~--~-~-~~~~~~D~li~~~~~~~~~~~~~~~~~~h~~~ 174 (194)
T PF12706_consen 99 EIGDFRITPFPANHGPPSYGGNKGFVIEPDGKKIFYSGDTNY--D-F-EELKNIDLLILECGYIDEEEEPPARGPGHMTL 174 (194)
T ss_dssp EETTEEEEEEEEESSSCCEEECCEEEEEETTEEEEEETSSSS--C-H-HHHTTBSEEEEEBCBSSGGHHCHHCCTTSBBH
T ss_pred EeceEEEEEEeccccccccccCceEEEecCCcceEEeeccch--h-h-hhhccCCEEEEeCCCcchhhcccccCCCCCCH
Confidence 999999999999999842220 28886 8999999988 2 3 4458999999999987 2456999999
Q ss_pred HHHHHHHHHcCCCeEEEEee
Q 026783 177 PRALEEVRKIQPKRTLFIGM 196 (233)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~h~ 196 (233)
+++.++++++++++++++|+
T Consensus 175 ~~~~~~~~~~~~~~~il~H~ 194 (194)
T PF12706_consen 175 EEALELAKELKAKKVILIHF 194 (194)
T ss_dssp HHHHHHHHHHTTSEEEEESB
T ss_pred HHHHHHHHHcCCCEEEEECC
Confidence 99999999999999999985
No 14
>PRK04286 hypothetical protein; Provisional
Probab=99.81 E-value=1.8e-19 Score=148.53 Aligned_cols=198 Identities=18% Similarity=0.222 Sum_probs=124.4
Q ss_pred CCCCCCEEEeccCchhhcCChhHHHhhhc-cCccCceEEeChhhHHH-HHhhccc--ccccccccCCCccce--eeeeee
Q 026783 30 RIRTIDAVIITHSHADAIGGLDDLRDWTN-NVQRHIPIYVAMRDFEV-MKKTHYY--LVDTSGIIPGAAVSE--LQFNII 103 (233)
Q Consensus 30 ~~~~i~~v~iTH~H~DH~ggl~~l~~~~~-~~~~~~~v~~~~~~~~~-l~~~~~~--~~~~~~~~~g~~~~~--~~~~~~ 103 (233)
.++++|+||+||.|+||++|+..+. +.. .+..++++|+++.++.. ....... .+... .+.. .... ......
T Consensus 62 ~~~~id~IliTH~H~DHi~g~~~~~-y~~~~~~~~i~iy~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~v~~~~~~~~~~ 138 (298)
T PRK04286 62 YAKKADVITISHYHYDHHTPFYEDP-YELSDEEIPKEIYKGKIVLIKDPTENINWSQRRRAP-RFLK-AVKDIAKKIEYA 138 (298)
T ss_pred ccccCCEEEecCCccccCCCccccc-cccccccchHHHhcCceecccCHHHHcCHHHHhhHH-hHHH-HHHhcCCceEEC
Confidence 4668999999999999999887652 110 11124567766554421 1000000 00000 0000 0000 112223
Q ss_pred CCCceEECCEEEEEE-EecCCCCCceeEEEE----c----cEEEcCCCC-CCCcccccccC--CCcEEEEcCcCC-CC-C
Q 026783 104 DEEPFTVQDLKITPL-PVWHGAGYRSLGFRF----G----NICYISDVS-EIPEETYPFLQ--DCEILIMDALRP-DR-S 169 (233)
Q Consensus 104 ~~~~~~~~~~~i~~~-~~~H~~g~~s~~~~i----~----~i~~~gD~~-~~~~~~~~~~~--~~d~li~e~~~~-~~-~ 169 (233)
+++.+.+++++|++. |+.|+....+.||++ + +++|+||++ ..++.+.+.+. ++|+|++++... .. .
T Consensus 139 ~g~~~~ig~~~V~~~~~v~H~~~~~~~Gy~i~~ri~~gg~~~~~~gDt~~~~~~~~~~~l~~~d~dlLi~~~~p~~lk~~ 218 (298)
T PRK04286 139 DGKTFRFGGTTIEFSPPVPHGADGSKLGYVIMVRISDGDESFVFASDVQGPLNDEAVEFILEKKPDVVIIGGPPTYLLGR 218 (298)
T ss_pred CCCEEEECCEEEEEeccCCCCCCCCccceEEEEEEEeCCEEEEEECCCCCCCCHHHHHHHhcCCCCEEEeCCcchhhhhh
Confidence 567899999999966 888975214666654 3 899999999 55666666665 899999998422 11 2
Q ss_pred CCCCCCHHHHHHHHHHc---CCCeEEEE-eeccCCChhHHHHHHHhhhhcCCCceEEcccCeEEe
Q 026783 170 SSTHFGLPRALEEVRKI---QPKRTLFI-GMMHLMDHEKVNEELLKLMETEGLDVQLSYDGLRVP 230 (233)
Q Consensus 170 ~~~H~~~~~~~~~~~~~---~~~~~~~~-h~~~~~~~~~~~~~~~~~~~~~~~~v~~a~dg~~i~ 230 (233)
...|.....+.+.+.++ ++++++++ |+++.+.+.+....+.+.++..+..+..|-|-|...
T Consensus 219 ri~~~~~h~s~~~~~~l~~~~~k~liLtHHls~~~n~~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 283 (298)
T PRK04286 219 RLSEEDLEKGIENLEEIVKNTPETLILDHHLLRDKNYREKLKELYERAEDRGVRVLTAAEFLGLE 283 (298)
T ss_pred hhccccHHHHHHHHHHHHhcCCCEEEEeccccccCCcHHHHHHHHHHHhhcCceEEeHHHHcCCC
Confidence 33344444555444444 89999999 899988888777778777888888999988877654
No 15
>PRK11709 putative L-ascorbate 6-phosphate lactonase; Provisional
Probab=99.78 E-value=2.6e-17 Score=138.01 Aligned_cols=167 Identities=19% Similarity=0.202 Sum_probs=114.4
Q ss_pred CCCCCCEEEeccCchhhcCChhHHHhhhccCccCceEEeChhhHHHHHhhcccccccccccCCCccceeeeeeeC-CCce
Q 026783 30 RIRTIDAVIITHSHADAIGGLDDLRDWTNNVQRHIPIYVAMRDFEVMKKTHYYLVDTSGIIPGAAVSELQFNIID-EEPF 108 (233)
Q Consensus 30 ~~~~i~~v~iTH~H~DH~ggl~~l~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~ 108 (233)
.++.||+|++||.|.||+. .+.+........+.+.++++....+.+... |. +..++..++ |+++
T Consensus 106 ~i~~IDaVLiTH~H~DHlD-~~tl~~l~~~~~~~~~~v~p~~~~~~~~~~------------Gv--p~~rv~~v~~Ge~i 170 (355)
T PRK11709 106 AIREIDAVLATHDHSDHID-VNVAAAVLQNCADHVKFIGPQACVDLWIGW------------GV--PKERCIVVKPGDVV 170 (355)
T ss_pred HCCCCCEEEECCCcccccC-hHHHHHHHhhcCCCcEEEEcHHHHHHHHhc------------CC--CcceEEEecCCCcE
Confidence 4679999999999999984 444332111111257799998877665442 21 123445554 7899
Q ss_pred EECCEEEEEEEecCC-----------CC---------CceeEEEEc----cEEEcCCCCCCCccccccc--CCCcEEEEc
Q 026783 109 TVQDLKITPLPVWHG-----------AG---------YRSLGFRFG----NICYISDVSEIPEETYPFL--QDCEILIMD 162 (233)
Q Consensus 109 ~~~~~~i~~~~~~H~-----------~g---------~~s~~~~i~----~i~~~gD~~~~~~~~~~~~--~~~d~li~e 162 (233)
++++++|+++|+.|. .+ ..++||+++ +++|+|||++++. +.+.. .++|++++.
T Consensus 171 ~ig~v~It~lpa~h~~~~i~~p~~h~~~~~~~~~d~~~~~~gyvie~~~~tvy~sGDT~~~~~-~~~i~~~~~iDvall~ 249 (355)
T PRK11709 171 KVKDIKIHALDSFDRTALVTLPADGKAAGGVLPDDMDRRAVNYLFKTPGGNIYHSGDSHYSNY-FAKHGNDHQIDVALGS 249 (355)
T ss_pred EECCEEEEEEeccccccccccccccccccccccccCCcceEEEEEEeCCeEEEEeCCCCccHH-HHHHHhcCCCCEEEec
Confidence 999999999998552 11 146899995 8999999998652 22222 268999886
Q ss_pred CcCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEeeccCCChhHHHHHHHhh
Q 026783 163 ALRPDRSSSTHFGLPRALEEVRKIQPKRTLFIGMMHLMDHEKVNEELLKL 212 (233)
Q Consensus 163 ~~~~~~~~~~H~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~ 212 (233)
.+........|++++++.++++.+++++++++|+.......+..+++.++
T Consensus 250 iG~~p~~~~~hm~p~ea~~~a~~l~ak~vIpiH~dtf~~~~~dp~~~~~~ 299 (355)
T PRK11709 250 YGENPRGITDKMTSIDILRMAESLNAKVVIPVHHDIWSNFQADPQEILVL 299 (355)
T ss_pred CCCCCCCCcCCCCHHHHHHHHHHcCCCEEEEEChhhccccccCHHHHHHH
Confidence 65322234679999999999999999999999987755433334444443
No 16
>TIGR00649 MG423 conserved hypothetical protein. Contains an ATP-binding domain at the N-terminal end of the protein. Possibly part of a superfamily of beta-lactmases
Probab=99.75 E-value=8.7e-17 Score=139.03 Aligned_cols=174 Identities=18% Similarity=0.254 Sum_probs=111.0
Q ss_pred CCCCCEEEeccCchhhcCChhHHHhhhccCccCceEEeChhhHHHHHhhcccccccccccCCCccceeeeeeeC-CCceE
Q 026783 31 IRTIDAVIITHSHADAIGGLDDLRDWTNNVQRHIPIYVAMRDFEVMKKTHYYLVDTSGIIPGAAVSELQFNIID-EEPFT 109 (233)
Q Consensus 31 ~~~i~~v~iTH~H~DH~ggl~~l~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~~ 109 (233)
..++++||+||.|.||++|++.+..... ..+||+++.+...++..... . +... ...+..++ ++.++
T Consensus 56 ~~~i~~I~iTH~H~DHiggl~~l~~~~~----~~~Vy~~~~t~~~l~~~~~~----~----~~~~-~~~~~~~~~~~~~~ 122 (422)
T TIGR00649 56 QDKVKGIFITHGHEDHIGAVPYLFHTVG----FPPIYGTPLTIALIKSKIKE----N----KLNV-RTDLLEIHEGEPIE 122 (422)
T ss_pred cccCCEEEECCCChHHhCcHHHHHHhCC----CCeEEeCHHHHHHHHHHHHh----c----CCCC-CCceEEeCCCCEEE
Confidence 5689999999999999999999986442 36899999998888754310 0 0000 11234443 68899
Q ss_pred EC-CEEEEEEEecCCCCCceeEEEEc----cEEEcCCCCCCCc-------c---cccc-cCCCcEEEEcCcCCCCCC---
Q 026783 110 VQ-DLKITPLPVWHGAGYRSLGFRFG----NICYISDVSEIPE-------E---TYPF-LQDCEILIMDALRPDRSS--- 170 (233)
Q Consensus 110 ~~-~~~i~~~~~~H~~g~~s~~~~i~----~i~~~gD~~~~~~-------~---~~~~-~~~~d~li~e~~~~~~~~--- 170 (233)
+| +++|+++++.|+. ..|++|+++ +++|+||+..... + +.+. .+++|+|++|+++.....
T Consensus 123 ig~~~~v~~~~~~H~~-p~s~g~~i~~~~~~ivytGD~~~~~~~~~~~~~d~~~l~~~~~~g~d~Li~EsT~~~~~~~~~ 201 (422)
T TIGR00649 123 TGENHTIEFIRITHSI-PDSVGFALHTPLGYIVYTGDFKFDNTPVIGEPPDLNRIAEYGKKGVLLLISDSTNVENPGFTP 201 (422)
T ss_pred eCCceEEEEEECCCCC-cceEEEEEEeCCcEEEECCCcCCCCCccCCcccCHHHHHhhcccCeEEEEECCCCCCCCCCCC
Confidence 96 5999999999975 268999984 7999999964211 1 1111 146899999999764221
Q ss_pred CCCCCHHHHHHHHHHcCCCeEEEEeeccCCChhHHHHHHHhhhhcCCCceEE
Q 026783 171 STHFGLPRALEEVRKIQPKRTLFIGMMHLMDHEKVNEELLKLMETEGLDVQL 222 (233)
Q Consensus 171 ~~H~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~~~v~~ 222 (233)
..|...++..+.+++. .++++++|+.... .+ ..++.+.+++.+.++.+
T Consensus 202 ~e~~~~~~i~~~~~~~-~~~viv~~fa~~~--~R-~~~i~~~a~~~~r~v~v 249 (422)
T TIGR00649 202 SEAKVLEQLNDIFKNA-KGRVIVATFASNI--HR-VQQLIQIARKQGRKFAV 249 (422)
T ss_pred CHHHHHHHHHHHHHhC-CCEEEEEEccccH--HH-HHHHHHHHHHhCCEEEE
Confidence 1122223333444343 4568888877442 12 22344444555555544
No 17
>KOG2121 consensus Predicted metal-dependent hydrolase (beta-lactamase superfamily) [General function prediction only]
Probab=99.65 E-value=1.5e-17 Score=145.38 Aligned_cols=192 Identities=20% Similarity=0.208 Sum_probs=131.5
Q ss_pred CCCCCEEEeccCchhhcCChhHHHhh-hc--c--CccCceEEeChhhHHHHHhhcc--cccc-ccc--ccCCCccceeee
Q 026783 31 IRTIDAVIITHSHADAIGGLDDLRDW-TN--N--VQRHIPIYVAMRDFEVMKKTHY--YLVD-TSG--IIPGAAVSELQF 100 (233)
Q Consensus 31 ~~~i~~v~iTH~H~DH~ggl~~l~~~-~~--~--~~~~~~v~~~~~~~~~l~~~~~--~~~~-~~~--~~~g~~~~~~~~ 100 (233)
++++.+|+|||.|.||..|+..+++. .. . ...++-|.+|...+++++.+.. .... ... ..+|.....-..
T Consensus 499 lr~LraI~ISHlHADHh~Gl~~vL~~r~k~~k~~~~~pl~vv~P~ql~~wl~~y~~~~~~~~~~~~~i~~~g~lf~~~s~ 578 (746)
T KOG2121|consen 499 LRKLRAIFISHLHADHHLGLISVLQARTKLLKGVENSPLLVVAPRQLKKWLQEYHRCPSFPASSVAKIGAPGALFAQKSP 578 (746)
T ss_pred HHhHHHHHHHhhcccccccHHHHHHHHHHhccccccCceEEeChHHHHHHHHHHhcCcccchhhhhhhcCchhhhhccCc
Confidence 66899999999999999999988753 22 1 2346888899999999987641 1100 000 001110000000
Q ss_pred -eee---CCC-ceEECCEEEEEEEecCCCCCceeEEEEc-----cEEEcCCCCCCCcccccccCCCcEEEEcCcCCCC--
Q 026783 101 -NII---DEE-PFTVQDLKITPLPVWHGAGYRSLGFRFG-----NICYISDVSEIPEETYPFLQDCEILIMDALRPDR-- 168 (233)
Q Consensus 101 -~~~---~~~-~~~~~~~~i~~~~~~H~~g~~s~~~~i~-----~i~~~gD~~~~~~~~~~~~~~~d~li~e~~~~~~-- 168 (233)
-.. ... --+.+...|.++|+.|++ .++|..+. +++|+|||.+++ .+.+..+++|+||+|+|+-+.
T Consensus 579 ~s~~~~~~~~~l~~~~l~~i~tc~viHCp--~syg~~i~~~~~~Ki~YSGDTrP~~-~~v~~g~datlLIHEAT~ED~l~ 655 (746)
T KOG2121|consen 579 DSVPERLLSYLLRELGLESIQTCPVIHCP--QSYGCSITHGSGWKIVYSGDTRPCE-DLVKAGKDATLLIHEATLEDDLE 655 (746)
T ss_pred cccchhhhhHHHHhcCceeEEecCcEecC--hhhceeEecccceEEEEcCCCCCch-hHhhhccCCceEEeehhhchhHH
Confidence 000 011 123567899999999999 67777764 899999999974 578888999999999998642
Q ss_pred ---CCCCCCCHHHHHHHHHHcCCCeEEEEeeccCCChhHHHHHHHhhhhcCCCceEEcccCeEEec
Q 026783 169 ---SSSTHFGLPRALEEVRKIQPKRTLFIGMMHLMDHEKVNEELLKLMETEGLDVQLSYDGLRVPV 231 (233)
Q Consensus 169 ---~~~~H~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~~~v~~a~dg~~i~l 231 (233)
...+|++..++++..+.+++++++++||+-++..-..... .. --++.+|.|.|.|.+
T Consensus 656 EeAv~k~HST~sEAi~V~~~m~ar~liLTHFSQRY~K~pl~~d----~~--~~~~~~afd~m~v~~ 715 (746)
T KOG2121|consen 656 EEAVEKGHSTTSEAISVAKKMNAKRLILTHFSQRYPKVPLPSD----GE--MDPVCVAFDKMAVSV 715 (746)
T ss_pred HHHHHhCCCCHHHHHHHHHhccchhhhhhhhhcccCCCCCCCc----cc--cchHHHhhhcceeec
Confidence 4689999999999999999999999999998752111000 00 004567777777754
No 18
>TIGR03675 arCOG00543 arCOG00543 universal archaeal KH-domain/beta-lactamase-domain protein. This family of proteins is universal in the archaea and consistsof an N-terminal type-1 KH-domain (pfam00013) a central beta-lactamase-domain (pfam00753) with a C-terminal motif associated with RNA metabolism (pfam07521). KH-domains are associated with RNA-binding, so taken together, this protein is a likely metal-dependent RNAase. This family was defined in as arCOG01782.
Probab=99.64 E-value=6.9e-15 Score=131.80 Aligned_cols=193 Identities=22% Similarity=0.239 Sum_probs=114.8
Q ss_pred CCCCCEEEeccCchhhcCChhHHHhhhccCccCceEEeChhhHHHHHhhccccc---ccc---cccCCCccce--eeeee
Q 026783 31 IRTIDAVIITHSHADAIGGLDDLRDWTNNVQRHIPIYVAMRDFEVMKKTHYYLV---DTS---GIIPGAAVSE--LQFNI 102 (233)
Q Consensus 31 ~~~i~~v~iTH~H~DH~ggl~~l~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~---~~~---~~~~g~~~~~--~~~~~ 102 (233)
+.+||+|||||+|.||+||++.+.++.. ..+||+++.+.+.+........ ... ..+....... ..+..
T Consensus 226 ~~~IDaVlITHaH~DHiG~LP~L~k~g~----~gpIY~T~pT~~l~~~ll~D~~~i~~~~g~~~~y~~~dv~~~~~~~~~ 301 (630)
T TIGR03675 226 LDELDAVVITHAHLDHSGLVPLLFKYGY----DGPVYCTPPTRDLMTLLQLDYIDVAQREGKKPPYSSKDVREALKHTIT 301 (630)
T ss_pred HHHCcEEEECCCCHHHHhhHHHHHHhCC----CCceeecHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHhccEE
Confidence 5689999999999999999999986422 4689999988776542211000 000 0011000000 12334
Q ss_pred eC-CCceEE-CCEEEEEEEecCCCCCceeEEEEc----cEEEcCCCCCCCccccc----ccCCCcEEEEcCcCCCCCCCC
Q 026783 103 ID-EEPFTV-QDLKITPLPVWHGAGYRSLGFRFG----NICYISDVSEIPEETYP----FLQDCEILIMDALRPDRSSST 172 (233)
Q Consensus 103 ~~-~~~~~~-~~~~i~~~~~~H~~g~~s~~~~i~----~i~~~gD~~~~~~~~~~----~~~~~d~li~e~~~~~~~~~~ 172 (233)
++ ++.+++ ++++++++++.|..|...+.+.+. +++|+||.+.....++. ...++|+|++|+++.... ..
T Consensus 302 l~yg~~~~i~~~i~vt~~~AGHilGsa~~~~~i~dg~~~IvYTGD~~~~~~~ll~~a~~~~~~vD~LI~ESTYg~~~-~~ 380 (630)
T TIGR03675 302 LDYGEVTDIAPDIKLTFYNAGHILGSAIAHLHIGDGLYNIVYTGDFKYEKTRLLDPAVNKFPRVETLIMESTYGGRD-DY 380 (630)
T ss_pred eCCCCeEEecCCEEEEEecCccccCceEEEEEECCCCEEEEEeCCCCCCCCcCccchhhcCCCCCEEEEeCccCCCC-CC
Confidence 44 677888 589999999999997344445553 79999999876543332 234799999999987532 22
Q ss_pred CCCHHHHH----HHHHH-cCCCeEEEEeeccCCChhHHHHHHHhhhhcCCC-ceEEcccCeE
Q 026783 173 HFGLPRAL----EEVRK-IQPKRTLFIGMMHLMDHEKVNEELLKLMETEGL-DVQLSYDGLR 228 (233)
Q Consensus 173 H~~~~~~~----~~~~~-~~~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~~-~v~~a~dg~~ 228 (233)
|.+-.+.. +.+.+ +..+..+++-.....+.++..-.+.+..+.... ++.+..|||.
T Consensus 381 ~~~r~~~e~~l~~~I~~tl~~gG~VLIP~favGR~QEll~~L~~~~~~g~lp~~pIy~dg~~ 442 (630)
T TIGR03675 381 QPSREEAEKELIKVVNETIKRGGKVLIPVFAVGRAQEVMLVLEEAMRKGLIPEVPVYLDGMI 442 (630)
T ss_pred CCCHHHHHHHHHHHHHHHHhCCCEEEEEechhHHHHHHHHHHHHHHHhCCCCCCcEEEEchH
Confidence 44444332 33333 334444455556666666665555555443211 3444456653
No 19
>COG1235 PhnP Metal-dependent hydrolases of the beta-lactamase superfamily I [General function prediction only]
Probab=99.64 E-value=1e-15 Score=124.79 Aligned_cols=173 Identities=25% Similarity=0.357 Sum_probs=101.7
Q ss_pred cCCCCCCEEEeccCchhhcCChhHHHhhhccCccCceEEeChhhHHHHH-----hhcccccccccccCCCc--cceeeee
Q 026783 29 ARIRTIDAVIITHSHADAIGGLDDLRDWTNNVQRHIPIYVAMRDFEVMK-----KTHYYLVDTSGIIPGAA--VSELQFN 101 (233)
Q Consensus 29 ~~~~~i~~v~iTH~H~DH~ggl~~l~~~~~~~~~~~~v~~~~~~~~~l~-----~~~~~~~~~~~~~~g~~--~~~~~~~ 101 (233)
...+.+|+||+||.|+||+.|++.|.+++ ..+++....+..... ..+.+.+..... .+.. .....+.
T Consensus 58 ~~~~~idai~~TH~H~DHi~Gl~~l~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~ 131 (269)
T COG1235 58 LGVSDLDAILLTHEHSDHIQGLDDLRRAY-----TLPIYVNPGTLRASTSDRLLGGFPYLFRHPFP-PFSLPAIGGLEVT 131 (269)
T ss_pred ccccccCeEEEecccHHhhcChHHHHHHh-----cCCcccccceecccchhhhhccchhhhcCCCC-ccccccccceeee
Confidence 33459999999999999999999999866 345555544433332 212111110000 0000 0011111
Q ss_pred ee--CCCceEECCEEEEEEEecCCCCCceeEEEEc----cEEEcCCCCCCCcccccc---cCCCcEEEEcCcCCCC-CCC
Q 026783 102 II--DEEPFTVQDLKITPLPVWHGAGYRSLGFRFG----NICYISDVSEIPEETYPF---LQDCEILIMDALRPDR-SSS 171 (233)
Q Consensus 102 ~~--~~~~~~~~~~~i~~~~~~H~~g~~s~~~~i~----~i~~~gD~~~~~~~~~~~---~~~~d~li~e~~~~~~-~~~ 171 (233)
.. .++.++..+..+..-+..+.. ....||... ++.|++|+..++++.... ....++.+.+...... ..+
T Consensus 132 ~~~~~hd~~~~~~~~~~~~~~~~~~-~~~~g~~~~~~~~~vay~~Dt~~~~~~~d~~l~~~~~~~~~~~~~~~~~~gh~~ 210 (269)
T COG1235 132 PFPVPHDAIEPVGFVIIRTGRKLHG-GTDIGYGLEWRIGDVAYLTDTELFPSNHDVELLDNGLYPLDIKDRILPDPGHLS 210 (269)
T ss_pred cCCCCCccccCCCcccccCcccccc-cccceeeeeeeeccEEEccccccCcchhHHHHhcCCccceeeeeccccccCCCC
Confidence 11 223444333333222222222 245556543 888999999887644333 3346666666665432 357
Q ss_pred CCCCHHHHHHHHHHcCCCeEEEEeeccCCChhHHHHH
Q 026783 172 THFGLPRALEEVRKIQPKRTLFIGMMHLMDHEKVNEE 208 (233)
Q Consensus 172 ~H~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~ 208 (233)
+|..++++.++++..++++++++|+++.++..+..++
T Consensus 211 ~h~~~~~a~~~~~~~~~~rivLtHls~~~~~~~~~~~ 247 (269)
T COG1235 211 NHLSAEEALELIEKLKPKRLVLTHLSHKNDDEELPEL 247 (269)
T ss_pred CchhHHHHHHHHHhCCcceEEEEecCCCCCHHHHhhh
Confidence 8888899999999999999999999999986554443
No 20
>COG0595 mRNA degradation ribonucleases J1/J2 (metallo-beta-lactamase superfamily) [Translation, ribosomal structure and biogenesis; Replication, recombination and repair]
Probab=99.63 E-value=1.5e-14 Score=126.63 Aligned_cols=178 Identities=19% Similarity=0.251 Sum_probs=115.8
Q ss_pred HhcCCCCCCEEEeccCchhhcCChhHHHhhhccCccCceEEeChhhHHHHHhhcccccccccccCCCccceeeeeeeC-C
Q 026783 27 ISARIRTIDAVIITHSHADAIGGLDDLRDWTNNVQRHIPIYVAMRDFEVMKKTHYYLVDTSGIIPGAAVSELQFNIID-E 105 (233)
Q Consensus 27 ~~~~~~~i~~v~iTH~H~DH~ggl~~l~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~ 105 (233)
+.....+|++|||||+|.||+||++.+..... .++||+++-+...++..... . +.......++.++ +
T Consensus 60 l~~n~~kvkgI~lTHgHeDHIGaip~ll~~~~----~~piy~s~lt~~Li~~k~~~----~----~~~~~~~~~~ev~~~ 127 (555)
T COG0595 60 LEENKDKVKGIFLTHGHEDHIGALPYLLKQVL----FAPIYASPLTAALIKEKLKE----H----GLFKNENELHEVKPG 127 (555)
T ss_pred hhhccccceEEEecCCchhhccchHHHHhcCC----cCceecCHhhHHHHHHHHHH----h----ccccccCceEEeCCC
Confidence 44556799999999999999999999997542 49999999999988766420 0 0011123455564 6
Q ss_pred CceEECCEEEEEEEecCCCCCceeEEEEc----cEEEcCCCCCCC--------c--ccccccC-CCcEEEEcCcCCCCCC
Q 026783 106 EPFTVQDLKITPLPVWHGAGYRSLGFRFG----NICYISDVSEIP--------E--ETYPFLQ-DCEILIMDALRPDRSS 170 (233)
Q Consensus 106 ~~~~~~~~~i~~~~~~H~~g~~s~~~~i~----~i~~~gD~~~~~--------~--~~~~~~~-~~d~li~e~~~~~~~~ 170 (233)
+.++++++.|+++++.|+- ++|+||.++ .++||||...-+ + ++.+..+ ++++|++|+|... .
T Consensus 128 ~~i~~~~~~v~f~~vtHSI-Pds~g~~i~Tp~G~Iv~TGDFk~d~~~~~g~~~d~~r~~~~g~eGVl~LisdsTna~--~ 204 (555)
T COG0595 128 SEIKFGSFEVEFFPVTHSI-PDSLGIVIKTPEGNIVYTGDFKFDPTPVDGEPTDLARLAEIGKEGVLALISDSTNAE--N 204 (555)
T ss_pred CeEEeCcEEEEEEeecccC-ccceEEEEECCCccEEEeCCEEecCCcCCCCcCCHHHHHHhccCCcEEEEeCCcccC--C
Confidence 8899999999999999998 489999997 799999983211 1 1222333 4899999999764 3
Q ss_pred CCCCCHHHH-HHHHHHc--C-CCeEEEEeeccCCChhHHHHHHHhhhhcCCCceEE
Q 026783 171 STHFGLPRA-LEEVRKI--Q-PKRTLFIGMMHLMDHEKVNEELLKLMETEGLDVQL 222 (233)
Q Consensus 171 ~~H~~~~~~-~~~~~~~--~-~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~~~v~~ 222 (233)
++...+|.. .+.+.+. + ..+++++.+..+- .....+.+.+...+.++.+
T Consensus 205 pg~t~SE~~v~~~l~~i~~~a~grVIv~tfaSni---~Ri~~i~~~A~~~gR~vvv 257 (555)
T COG0595 205 PGFTPSESEVGENLEDIIRNAKGRVIVTTFASNI---ERIQTIIDAAEKLGRKVVV 257 (555)
T ss_pred CCCCCCHHHHHHHHHHHHHhCCCcEEEEEchhhH---HHHHHHHHHHHHcCCeEEE
Confidence 444444332 2333322 2 2345554333321 1233445555555555554
No 21
>COG1236 YSH1 Predicted exonuclease of the beta-lactamase fold involved in RNA processing [Translation, ribosomal structure and biogenesis]
Probab=99.54 E-value=2e-13 Score=117.65 Aligned_cols=174 Identities=21% Similarity=0.207 Sum_probs=108.4
Q ss_pred CCCEEEeccCchhhcCChhHHHhhhccCccCceEEeChhhHHHHHhhcccccccc-----cccCCCccc--eeeeeeeC-
Q 026783 33 TIDAVIITHSHADAIGGLDDLRDWTNNVQRHIPIYVAMRDFEVMKKTHYYLVDTS-----GIIPGAAVS--ELQFNIID- 104 (233)
Q Consensus 33 ~i~~v~iTH~H~DH~ggl~~l~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~~~-----~~~~g~~~~--~~~~~~~~- 104 (233)
++|+++|||+|.||+|+++.+..... +.+||+++.+...+.-.....+... ..+...+.+ ..+.+.++
T Consensus 49 ~vDavllTHaHlDH~g~lp~l~~~~~----~~~v~aT~~T~~l~~~~l~d~~~~~~~~~~~~~~~~d~~~~~~~~~~~~y 124 (427)
T COG1236 49 KVDAVLLTHAHLDHIGALPYLVRNGF----EGPVYATPPTAALLKVLLGDSLKLAEGPDKPPYSEEDVERVPDLIRPLPY 124 (427)
T ss_pred CcCEEEeccCchhhhcccHHHHHhcc----CCceeeccCHHHHHHHHHHHHHhhhcCCCCCCCchhHHHhhHhhEEEecC
Confidence 58999999999999999999986332 4799999999887754322111100 011111111 12334455
Q ss_pred CCceEECCEEEEEEEecCCCCCceeEEEEc--cEEEcCCCCCCCcccccc---cCCCcEEEEcCcCCCCCCCCCCCHHHH
Q 026783 105 EEPFTVQDLKITPLPVWHGAGYRSLGFRFG--NICYISDVSEIPEETYPF---LQDCEILIMDALRPDRSSSTHFGLPRA 179 (233)
Q Consensus 105 ~~~~~~~~~~i~~~~~~H~~g~~s~~~~i~--~i~~~gD~~~~~~~~~~~---~~~~d~li~e~~~~~~~~~~H~~~~~~ 179 (233)
++++++++++|+++++.|.+|...+-+..+ +++|+||.+...+..+.- ...+|+|++|+++.. ..|....+.
T Consensus 125 g~~~~v~~~~v~~~~AGHilGsa~~~le~~~~~ilytGD~~~~~~~l~~~a~~~~~~DvLI~EsTYg~---~~~~~r~~~ 201 (427)
T COG1236 125 GEPVEVGGVKVTFYNAGHILGSAAILLEVDGGRILYTGDVKRRKDRLLNGAELPPCIDVLIVESTYGD---RLHPNRDEV 201 (427)
T ss_pred CCceEeeeEEEEEecCCCccceeEEEEEeCCceEEEEeccCCCcCCCCCccccCCCCcEEEEecccCC---ccCCCHHHH
Confidence 789999999999999999997333333333 899999998654433321 122699999999976 444444333
Q ss_pred ----HHHHHH-cCCCeEEEEeeccCCChhHHHHHHHhhh
Q 026783 180 ----LEEVRK-IQPKRTLFIGMMHLMDHEKVNEELLKLM 213 (233)
Q Consensus 180 ----~~~~~~-~~~~~~~~~h~~~~~~~~~~~~~~~~~~ 213 (233)
.+.+++ +.....+++-.....+.++....+..+.
T Consensus 202 e~~f~~~v~~~l~~GG~vlipafa~graQEll~~L~~~~ 240 (427)
T COG1236 202 ERRFIESVKAALERGGTVLIPAFALGRAQELLLILRELG 240 (427)
T ss_pred HHHHHHHHHHHHhCCCEEEEecccccHHHHHHHHHHHHh
Confidence 233443 3444455555556655555555554443
No 22
>smart00849 Lactamase_B Metallo-beta-lactamase superfamily. Apart from the beta-lactamases a number of other proteins contain this domain PUBMED:7588620. These proteins include thiolesterases, members of the glyoxalase II family, that catalyse the hydrolysis of S-D-lactoyl-glutathione to form glutathione and D-lactic acid and a competence protein that is essential for natural transformation in Neisseria gonorrhoeae and could be a transporter involved in DNA uptake. Except for the competence protein these proteins bind two zinc ions per molecule as cofactor.
Probab=99.45 E-value=1.8e-12 Score=99.09 Aligned_cols=112 Identities=22% Similarity=0.255 Sum_probs=76.6
Q ss_pred hhHhcCCCCCCEEEeccCchhhcCChhHHHhhhccCccCceEEeChhhHHHHHhhcccccccccccCCCccceeeeeee-
Q 026783 25 SCISARIRTIDAVIITHSHADAIGGLDDLRDWTNNVQRHIPIYVAMRDFEVMKKTHYYLVDTSGIIPGAAVSELQFNII- 103 (233)
Q Consensus 25 ~~~~~~~~~i~~v~iTH~H~DH~ggl~~l~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~g~~~~~~~~~~~- 103 (233)
.+...+.+++++|++||.|.||++|++.+.+.. ++++|+++...+.+........... .. .........+
T Consensus 33 ~l~~~~~~~i~~i~iTH~H~DH~~g~~~~~~~~-----~~~i~~~~~~~~~~~~~~~~~~~~~-~~---~~~~~~~~~~~ 103 (183)
T smart00849 33 ELKKLGPKDIDAIILTHGHPDHIGGLPELLEAP-----GAPVYAPEGTAELLKDLLKLGGALG-AE---APPPPPDRTLK 103 (183)
T ss_pred HHHHcCchhhcEEEecccCcchhccHHHHHhCC-----CCcEEEchhhhHHHhccchhccccC-cC---CCCCccceecC
Confidence 344556789999999999999999999888752 6889999999888764322100000 00 0011223333
Q ss_pred CCCceEECCEEEEEEEe-cCCCCCceeEEEEc--cEEEcCCCCCCCc
Q 026783 104 DEEPFTVQDLKITPLPV-WHGAGYRSLGFRFG--NICYISDVSEIPE 147 (233)
Q Consensus 104 ~~~~~~~~~~~i~~~~~-~H~~g~~s~~~~i~--~i~~~gD~~~~~~ 147 (233)
.++.+.+++.+++.++. .|++ .+++|.+. +++|+||+....+
T Consensus 104 ~~~~~~~~~~~~~~~~~~~h~~--~~~~~~~~~~~vl~~gD~~~~~~ 148 (183)
T smart00849 104 DGEELDLGGLELEVIHTPGHTP--GSIVLYLPEGKILFTGDLLFSGG 148 (183)
T ss_pred CCCEEEeCCceEEEEECCCCCC--CcEEEEECCCCEEEECCeeeccC
Confidence 46889998888887776 3555 46668886 7999999877544
No 23
>TIGR03413 GSH_gloB hydroxyacylglutathione hydrolase. Members of this protein family are hydroxyacylglutathione hydrolase, a detoxification enzyme known as glyoxalase II. It follows lactoylglutathione lyase, or glyoxalase I, and acts to remove the toxic metabolite methylglyoxal and related compounds. This protein belongs to the broader metallo-beta-lactamase family (pfam00753).
Probab=99.44 E-value=1.7e-12 Score=104.56 Aligned_cols=84 Identities=24% Similarity=0.438 Sum_probs=64.0
Q ss_pred CCCEEEeccCchhhcCChhHHHhhhccCccCceEEeChhhHHHHHhhcccccccccccCCCccceeeeeeeCCCceEECC
Q 026783 33 TIDAVIITHSHADAIGGLDDLRDWTNNVQRHIPIYVAMRDFEVMKKTHYYLVDTSGIIPGAAVSELQFNIIDEEPFTVQD 112 (233)
Q Consensus 33 ~i~~v~iTH~H~DH~ggl~~l~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 112 (233)
++++|++||.|+||++|+..+.+.+ +++||+++.. .. ++ ......+++.+.+++
T Consensus 43 ~l~~Il~TH~H~DHigG~~~l~~~~-----~~~V~~~~~~------~~----------~~-----~~~~v~~g~~~~~g~ 96 (248)
T TIGR03413 43 TLTAILLTHHHHDHVGGVAELLEAF-----PAPVYGPAEE------RI----------PG-----ITHPVKDGDTVTLGG 96 (248)
T ss_pred eeeEEEeCCCCccccCCHHHHHHHC-----CCeEEecccc------cC----------CC-----CcEEeCCCCEEEECC
Confidence 7999999999999999999998765 4889998754 10 01 111223578899999
Q ss_pred EEEEEEEec-CCCCCceeEEEEc--cEEEcCCCCC
Q 026783 113 LKITPLPVW-HGAGYRSLGFRFG--NICYISDVSE 144 (233)
Q Consensus 113 ~~i~~~~~~-H~~g~~s~~~~i~--~i~~~gD~~~ 144 (233)
.+++.++++ |++ .+++|.+. +++|+||+-.
T Consensus 97 ~~i~v~~tpGHT~--g~i~~~~~~~~~lftGDtl~ 129 (248)
T TIGR03413 97 LEFEVLAVPGHTL--GHIAYYLPDSPALFCGDTLF 129 (248)
T ss_pred EEEEEEECCCCCc--ccEEEEECCCCEEEEcCccc
Confidence 999988776 777 46778775 8999999854
No 24
>COG1782 Predicted metal-dependent RNase, consists of a metallo-beta-lactamase domain and an RNA-binding KH domain [General function prediction only]
Probab=99.42 E-value=2.8e-12 Score=108.47 Aligned_cols=195 Identities=21% Similarity=0.209 Sum_probs=117.9
Q ss_pred CCCCCEEEeccCchhhcCChhHHHhhhccCccCceEEeChhhHHHHHhh---cccccccc---cccCCCccceeeeee--
Q 026783 31 IRTIDAVIITHSHADAIGGLDDLRDWTNNVQRHIPIYVAMRDFEVMKKT---HYYLVDTS---GIIPGAAVSELQFNI-- 102 (233)
Q Consensus 31 ~~~i~~v~iTH~H~DH~ggl~~l~~~~~~~~~~~~v~~~~~~~~~l~~~---~~~~~~~~---~~~~g~~~~~~~~~~-- 102 (233)
...+|+|+|||+|.||||=+|.|.++.. .-+|||++.+.+.+.-. +....... ..|....+...-.+.
T Consensus 232 ~~~lDAViiTHAHLDH~G~lP~LfkYgy----~GPVY~T~PTRDlm~LLq~Dyi~va~keg~~ppY~~k~v~~~lkhtIt 307 (637)
T COG1782 232 PDELDAVIITHAHLDHCGFLPLLFKYGY----DGPVYCTPPTRDLMVLLQLDYIEVAEKEGGEPPYESKDVRKVLKHTIT 307 (637)
T ss_pred ccccceEEEeecccccccchhhhhhcCC----CCCeeeCCCcHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHheeee
Confidence 3479999999999999999999988643 67999999888766311 10000111 111110111111122
Q ss_pred eC-CCceEEC-CEEEEEEEecCCCCCceeEEEEc----cEEEcCCCCCCCccccccc----CCCcEEEEcCcCCCCCCCC
Q 026783 103 ID-EEPFTVQ-DLKITPLPVWHGAGYRSLGFRFG----NICYISDVSEIPEETYPFL----QDCEILIMDALRPDRSSST 172 (233)
Q Consensus 103 ~~-~~~~~~~-~~~i~~~~~~H~~g~~s~~~~i~----~i~~~gD~~~~~~~~~~~~----~~~d~li~e~~~~~~~~~~ 172 (233)
++ |+.-++. ++++++..+.|-.|..+..+-++ .++|+||..+..-++++-+ ..++.|++|+++..+. ..
T Consensus 308 ldYgevTDIaPDirLTf~NAGHILGSA~~HlHIGdGlyNi~yTGDfk~~~trLl~~A~n~FpRvEtlimEsTYGg~~-d~ 386 (637)
T COG1782 308 LDYGEVTDIAPDIRLTFYNAGHILGSAMAHLHIGDGLYNIVYTGDFKFEKTRLLEPANNKFPRVETLIMESTYGGRD-DV 386 (637)
T ss_pred eccCcccccCCccEEEEecccchhcceeeEEEecCCceeEEEecccccceeeecChhhccCcchhheeeeeccCCcc-cc
Confidence 23 4555554 88999999999887445556666 8999999987654454433 3589999999987422 23
Q ss_pred CCCHHHHHH----HHHH-cCCCeEEEEeeccCCChhHHHHHHHhhhhcCCC-ceEEcccCeEEe
Q 026783 173 HFGLPRALE----EVRK-IQPKRTLFIGMMHLMDHEKVNEELLKLMETEGL-DVQLSYDGLRVP 230 (233)
Q Consensus 173 H~~~~~~~~----~~~~-~~~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~~-~v~~a~dg~~i~ 230 (233)
+..-+++-+ .+.+ ++..-.+++-...-.+.++..-.+.+..+..-. .+.+..|||..+
T Consensus 387 q~~R~eaE~~L~~vi~~t~~rGGKvLIP~fAVGR~QEvM~VLee~mr~g~ipe~PVYlDGMI~E 450 (637)
T COG1782 387 QPPREEAEKELIKVINDTLKRGGKVLIPVFAVGRSQEVMIVLEEAMRKGLIPEVPVYLDGMIWE 450 (637)
T ss_pred CccHHHHHHHHHHHHHHHHhcCCeEEEEeeeccccceehhHHHHHHhcCCCCCCceeeeeeeee
Confidence 333444432 3332 233334455556666666654445555443333 478889999765
No 25
>PLN02398 hydroxyacylglutathione hydrolase
Probab=99.42 E-value=1.6e-12 Score=107.72 Aligned_cols=113 Identities=17% Similarity=0.243 Sum_probs=76.1
Q ss_pred ceeeEEEeeecCccchhhhh--------hHhcCCCCCCEEEeccCchhhcCChhHHHhhhccCccCceEEeChhhHHHHH
Q 026783 6 STIALFVGFLPMGTCLIITS--------CISARIRTIDAVIITHSHADAIGGLDDLRDWTNNVQRHIPIYVAMRDFEVMK 77 (233)
Q Consensus 6 ~~~~~~~~~~~~~~~~l~~~--------~~~~~~~~i~~v~iTH~H~DH~ggl~~l~~~~~~~~~~~~v~~~~~~~~~l~ 77 (233)
.|+++++.-...+.+.++|+ .+.....+|++|++||.|+||+||+..|.+.+ +++||+++...+.+.
T Consensus 86 dNy~Yli~d~~t~~~~vVDP~~a~~vl~~l~~~g~~L~~ILlTH~H~DH~GG~~~L~~~~-----ga~V~g~~~~~~~i~ 160 (329)
T PLN02398 86 DNYAYLLHDEDTGTVGVVDPSEAVPVIDALSRKNRNLTYILNTHHHYDHTGGNLELKARY-----GAKVIGSAVDKDRIP 160 (329)
T ss_pred ceEEEEEEECCCCEEEEEcCCCHHHHHHHHHhcCCCceEEEECCCCchhhCCHHHHHHhc-----CCEEEEehHHhhhcc
Confidence 35666654322334444442 23334568999999999999999999998865 589999976543211
Q ss_pred hhcccccccccccCCCccceeeeeeeCCCceEECCEEEEEEEec-CCCCCceeEEEEc--cEEEcCCCCC
Q 026783 78 KTHYYLVDTSGIIPGAAVSELQFNIIDEEPFTVQDLKITPLPVW-HGAGYRSLGFRFG--NICYISDVSE 144 (233)
Q Consensus 78 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-H~~g~~s~~~~i~--~i~~~gD~~~ 144 (233)
+ .....-+|+.+.+|+.+++.+.++ |++ .+++|.+. .++|+||+-.
T Consensus 161 --------------~-----~d~~v~dGd~i~lgg~~l~vi~tPGHT~--GhI~~~~~~~~vLFtGDtLf 209 (329)
T PLN02398 161 --------------G-----IDIVLKDGDKWMFAGHEVLVMETPGHTR--GHISFYFPGSGAIFTGDTLF 209 (329)
T ss_pred --------------C-----CcEEeCCCCEEEECCeEEEEEeCCCcCC--CCEEEEECCCCEEEECCCcC
Confidence 1 111222578899999888877654 777 46666664 7999999844
No 26
>COG2220 Predicted Zn-dependent hydrolases of the beta-lactamase fold [General function prediction only]
Probab=99.40 E-value=3.6e-11 Score=97.53 Aligned_cols=202 Identities=19% Similarity=0.245 Sum_probs=124.6
Q ss_pred eEEEeeecCccchhhhhhHhc--------------CCCCCCEEEeccCchhhcCChhHHHhhhccCccCceEEeChhhH-
Q 026783 9 ALFVGFLPMGTCLIITSCISA--------------RIRTIDAVIITHSHADAIGGLDDLRDWTNNVQRHIPIYVAMRDF- 73 (233)
Q Consensus 9 ~~~~~~~~~~~~~l~~~~~~~--------------~~~~i~~v~iTH~H~DH~ggl~~l~~~~~~~~~~~~v~~~~~~~- 73 (233)
++|.+. .++..+++|+.... ..+.+|+|++||.|.||++.-........ +.+++..+...
T Consensus 15 a~~lie-~~~~~iliDP~~~~~~~~~~~~~~~~~~~~~~~D~ilitH~H~DHl~~~~~~~~~~~----~~~~~~~p~~~~ 89 (258)
T COG2220 15 AAFLIE-TGGKRILIDPVLSGAPSPSNFPGGLFEDLLPPIDYILITHDHYDHLDDETLIALRTN----KAPVVVVPLGAG 89 (258)
T ss_pred eEEEEE-ECCEEEEECcccCCCCCcccccCcCChhhcCCCCEEEEeCCCccccCHHHHHHHhcC----CCcEEEeHHHHH
Confidence 566666 44477888865553 24579999999999999963332222211 34555544444
Q ss_pred HHHHhhcccccccccccCCCccceeeeeeeC-CCceEECCEEEEEEEecCCCC-----------CceeEEEEc----cEE
Q 026783 74 EVMKKTHYYLVDTSGIIPGAAVSELQFNIID-EEPFTVQDLKITPLPVWHGAG-----------YRSLGFRFG----NIC 137 (233)
Q Consensus 74 ~~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~~~~~~~i~~~~~~H~~g-----------~~s~~~~i~----~i~ 137 (233)
....+. | .........+ ++.+++++.+++..++.|.+. ....+|+++ +++
T Consensus 90 ~~~~~~------------g--~~~~~~~~~~~~~~~~~~~~~i~~~~a~h~~~~~~~~~~~~~~~~~~~~vi~~~g~~iy 155 (258)
T COG2220 90 DLLIRD------------G--VEAERVHELGWGDVIELGDLEITAVPAYHVSARHLPGRGIRPTGLWVGYVIETPGGRVY 155 (258)
T ss_pred HHHHhc------------C--CCcceEEeecCCceEEecCcEEEEEEeecccccccCCCCccccCCceEEEEEeCCceEE
Confidence 333222 1 1223344443 678889999988888887641 246778886 899
Q ss_pred EcCCCCCCCcccccccCCCcEEEEcCcCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEeec-cCCChhHHHHHHHhhhhcC
Q 026783 138 YISDVSEIPEETYPFLQDCEILIMDALRPDRSSSTHFGLPRALEEVRKIQPKRTLFIGMM-HLMDHEKVNEELLKLMETE 216 (233)
Q Consensus 138 ~~gD~~~~~~~~~~~~~~~d~li~e~~~~~~~~~~H~~~~~~~~~~~~~~~~~~~~~h~~-~~~~~~~~~~~~~~~~~~~ 216 (233)
+.||+++...........+|+++++..... ...++...++.+..+.++++.++.+|.+ .....+...+.+....+..
T Consensus 156 h~GDt~~~~~~~~~~~~~~DvallPig~~~--~~~~~~~~~~~~~~~~l~~~~viP~Hy~~~~~~~~~~~~~~~~~~~~~ 233 (258)
T COG2220 156 HAGDTGYLFLIIEELDGPVDVALLPIGGYP--NATMMPPEAAVAAAEVLRPKRVIPMHYGPTFPPIEEDPEEFLHALDAG 233 (258)
T ss_pred eccCccHHHHhhhhhcCCccEEEeccCCCC--CCccCCHHHHHHHHHHhcCCeEEeecccccCccccCCHHHHHHhhhhc
Confidence 999998722111122223799999876532 4567778888888899999999999988 3333222234444433322
Q ss_pred C--CceEEcccCeEEec
Q 026783 217 G--LDVQLSYDGLRVPV 231 (233)
Q Consensus 217 ~--~~v~~a~dg~~i~l 231 (233)
+ .++.....|..+.+
T Consensus 234 ~~~~~~~~~~~g~~~~~ 250 (258)
T COG2220 234 GEPVKVFILELGESVEL 250 (258)
T ss_pred CCCceeeEecCCceEEc
Confidence 2 35566666665543
No 27
>COG2333 ComEC Predicted hydrolase (metallo-beta-lactamase superfamily) [General function prediction only]
Probab=99.40 E-value=7.8e-12 Score=101.83 Aligned_cols=156 Identities=21% Similarity=0.271 Sum_probs=98.3
Q ss_pred ccchhhhhhHhcCCCCCCEEEeccCchhhcCChhHHHhhhccCccCceEEeChhhHHHHHhhcccccccccccCCCccce
Q 026783 18 GTCLIITSCISARIRTIDAVIITHSHADAIGGLDDLRDWTNNVQRHIPIYVAMRDFEVMKKTHYYLVDTSGIIPGAAVSE 97 (233)
Q Consensus 18 ~~~~l~~~~~~~~~~~i~~v~iTH~H~DH~ggl~~l~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~g~~~~~ 97 (233)
+...+++.+...++++||.+++||.|.||+||+..+.+.+.. +.+-++.+.........+. ..
T Consensus 75 ~~~~iip~Lk~~GV~~iD~lIlTH~d~DHiGg~~~vl~~~~v--~~~~i~~~~~~~~~~~~~~---------------~~ 137 (293)
T COG2333 75 GQDVIIPYLKSLGVRKLDQLILTHPDADHIGGLDEVLKTIKV--PELWIYAGSDSTSTFVLRD---------------AG 137 (293)
T ss_pred CceeehhhHhHcCCccccEEEeccCCccccCCHHHHHhhCCC--CcEEEeCCCCccchhhhhh---------------cC
Confidence 567788999999999999999999999999999999985431 1233333322211111000 01
Q ss_pred eeeee-eCCCceEECCEEEEEE-EecCCC---CCceeEEEEc----cEEEcCCCCCCCcccc-cccC--CCcEEEEcCcC
Q 026783 98 LQFNI-IDEEPFTVQDLKITPL-PVWHGA---GYRSLGFRFG----NICYISDVSEIPEETY-PFLQ--DCEILIMDALR 165 (233)
Q Consensus 98 ~~~~~-~~~~~~~~~~~~i~~~-~~~H~~---g~~s~~~~i~----~i~~~gD~~~~~~~~~-~~~~--~~d~li~e~~~ 165 (233)
..... ..|+.+.+++..++.+ |..... +..|+..++. +++++||...-.|+.+ +.-. ++|+|.+
T Consensus 138 ~~~~~~~~G~~~~~~~~~f~vl~P~~~~~~~~N~~S~Vl~v~~g~~s~LlTGD~e~~~E~~l~~~~~~l~~dVLkV---- 213 (293)
T COG2333 138 IPVRSCKAGDSWQWGGVVFQVLSPVGGVSDDLNNDSCVLRVTFGGNSFLLTGDLEEKGEKLLKKYGPDLRADVLKV---- 213 (293)
T ss_pred CceeccccCceEEECCeEEEEEcCCccccccccCcceEEEEEeCCeeEEEecCCCchhHHHHHhhCCCccceEEEe----
Confidence 11222 2478999999988866 332221 2456666665 9999999976544221 1111 3778876
Q ss_pred CCCCCCCCCCH--HHHHHHHHHcCCCeEEEEeeccCC
Q 026783 166 PDRSSSTHFGL--PRALEEVRKIQPKRTLFIGMMHLM 200 (233)
Q Consensus 166 ~~~~~~~H~~~--~~~~~~~~~~~~~~~~~~h~~~~~ 200 (233)
+|.+. +....+++.++|+.++++-...+.
T Consensus 214 ------~HHGS~tSss~~Fl~~v~Pk~AliS~G~~N~ 244 (293)
T COG2333 214 ------GHHGSKTSSSLAFLEAVKPKVALISSGRNNR 244 (293)
T ss_pred ------ccCCccccCcHHHHHhcCCcEEEEEeeccCC
Confidence 23332 334688999999998887655333
No 28
>PF13483 Lactamase_B_3: Beta-lactamase superfamily domain; PDB: 1VJN_B 3KL7_A.
Probab=99.40 E-value=1.8e-12 Score=97.89 Aligned_cols=142 Identities=21% Similarity=0.347 Sum_probs=89.4
Q ss_pred eeeEEEeeecCccchhhhhhHh-----cCCCCCCEEEeccCchhhcCChhHHHhhhccCccCceEEeChhhHHHHHhhcc
Q 026783 7 TIALFVGFLPMGTCLIITSCIS-----ARIRTIDAVIITHSHADAIGGLDDLRDWTNNVQRHIPIYVAMRDFEVMKKTHY 81 (233)
Q Consensus 7 ~~~~~~~~~~~~~~~l~~~~~~-----~~~~~i~~v~iTH~H~DH~ggl~~l~~~~~~~~~~~~v~~~~~~~~~l~~~~~ 81 (233)
.-++|.+.. ++..+++|+... ....++|+|++||.|.||+.. ..+.+ . ..
T Consensus 6 gha~~~ie~-~g~~iliDP~~~~~~~~~~~~~~D~IlisH~H~DH~~~-~~l~~--------~-------------~~-- 60 (163)
T PF13483_consen 6 GHASFLIET-GGKRILIDPWFSSVGYAPPPPKADAILISHSHPDHFDP-ETLKR--------L-------------DR-- 60 (163)
T ss_dssp ETTEEEEEE-TTEEEEES--TTT--T-TSS-B-SEEEESSSSTTT-CC-CCCCC--------H-------------HT--
T ss_pred EeeEEEEEE-CCEEEEECCCCCccCcccccCCCCEEEECCCccccCCh-hHhhh--------c-------------cc--
Confidence 346777884 678889998763 125789999999999999974 22211 1 10
Q ss_pred cccccccccCCCccceeeeeee-CCCceEECCEEEEEEEecCCC-----CCceeEEEEc----cEEEcCCCCCCCc-ccc
Q 026783 82 YLVDTSGIIPGAAVSELQFNII-DEEPFTVQDLKITPLPVWHGA-----GYRSLGFRFG----NICYISDVSEIPE-ETY 150 (233)
Q Consensus 82 ~~~~~~~~~~g~~~~~~~~~~~-~~~~~~~~~~~i~~~~~~H~~-----g~~s~~~~i~----~i~~~gD~~~~~~-~~~ 150 (233)
+...+ .++++++++++|+.++..|.. .....+|.++ ++++.||+...++ ...
T Consensus 61 -----------------~~~vv~~~~~~~~~~~~i~~v~~~~~~~~~~~~~~~~~~~i~~~g~~i~~~Gd~~~~~~~~~~ 123 (163)
T PF13483_consen 61 -----------------DIHVVAPGGEYRFGGFKITAVPAYHDGPGGHPRGENVGYLIEVGGVTIYHAGDTGFPPDDEQL 123 (163)
T ss_dssp -----------------SSEEE-TTEEEECTTEEEEEEEEEE-STGTS-TTCCEEEEEEETTEEEEE-TT--S---HHHH
T ss_pred -----------------ccEEEccceEEEEeeeEEEEEeeeccccCCCCcCCeEEEEEEeCCCEEEEECCCccCCCHHHH
Confidence 11222 356788999999999999852 1257888886 8999999986432 334
Q ss_pred cccCCCcEEEEcCcCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEe
Q 026783 151 PFLQDCEILIMDALRPDRSSSTHFGLPRALEEVRKIQPKRTLFIG 195 (233)
Q Consensus 151 ~~~~~~d~li~e~~~~~~~~~~H~~~~~~~~~~~~~~~~~~~~~h 195 (233)
..+.++|++++.... ...++.+++.+.+++++|+.++++|
T Consensus 124 ~~~~~vDvl~~p~~g-----~~~~~~~~a~~~~~~l~pk~viP~H 163 (163)
T PF13483_consen 124 KQLGKVDVLFLPVGG-----PFTMGPEEAAELAERLKPKLVIPMH 163 (163)
T ss_dssp HHH-S-SEEEEE--T-----TTS--HHHHHHHHHHCT-SEEEEES
T ss_pred hcccCCCEEEecCCC-----CcccCHHHHHHHHHHcCCCEEEeCC
Confidence 455689999996554 3457789999999999999999987
No 29
>PLN02469 hydroxyacylglutathione hydrolase
Probab=99.39 E-value=1.6e-12 Score=105.10 Aligned_cols=110 Identities=15% Similarity=0.231 Sum_probs=71.5
Q ss_pred eeeEEEeeecCccchhhhh--------hHhcCCCCCCEEEeccCchhhcCChhHHHhhhccCccCceEEeChhhHHHHHh
Q 026783 7 TIALFVGFLPMGTCLIITS--------CISARIRTIDAVIITHSHADAIGGLDDLRDWTNNVQRHIPIYVAMRDFEVMKK 78 (233)
Q Consensus 7 ~~~~~~~~~~~~~~~l~~~--------~~~~~~~~i~~v~iTH~H~DH~ggl~~l~~~~~~~~~~~~v~~~~~~~~~l~~ 78 (233)
|++|++.-...+.+++||+ .++....+|++|++||.|+||+||+..|.+.++ +++||++...
T Consensus 12 Ny~Yli~d~~~~~~vlIDp~~~~~il~~l~~~g~~l~~Il~TH~H~DH~gG~~~l~~~~~----~~~V~~~~~~------ 81 (258)
T PLN02469 12 NYAYLIIDESTKDAAVVDPVDPEKVLQAAHEHGAKIKLVLTTHHHWDHAGGNEKIKKLVP----GIKVYGGSLD------ 81 (258)
T ss_pred eEEEEEEeCCCCeEEEECCCChHHHHHHHHHcCCcccEEEecCCCCccccCHHHHHHHCC----CCEEEEechh------
Confidence 4566664323345566663 222233589999999999999999999988653 5899987632
Q ss_pred hcccccccccccCCCccceeeeeeeCCCceEECC-EEEEEEEec-CCCCCceeEEEEc------cEEEcCCCC
Q 026783 79 THYYLVDTSGIIPGAAVSELQFNIIDEEPFTVQD-LKITPLPVW-HGAGYRSLGFRFG------NICYISDVS 143 (233)
Q Consensus 79 ~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~-~~i~~~~~~-H~~g~~s~~~~i~------~i~~~gD~~ 143 (233)
.. ++ ......+|+.+.+|+ ..++.+.++ |++ .+++|.+. .++|+||+-
T Consensus 82 ~~----------~~-----~~~~v~~gd~i~lg~~~~~~vi~tPGHT~--ghi~~~~~~~~~~~~~lFtGDtL 137 (258)
T PLN02469 82 NV----------KG-----CTHPVENGDKLSLGKDVNILALHTPCHTK--GHISYYVTGKEGEDPAVFTGDTL 137 (258)
T ss_pred cC----------CC-----CCeEeCCCCEEEECCceEEEEEECCCCCC--CCEEEEeccCCCCCCEEEecCcc
Confidence 00 01 111223578899985 567755543 776 46777664 499999974
No 30
>TIGR00361 ComEC_Rec2 DNA internalization-related competence protein ComEC/Rec2. The role for this protein in species that are not naturally transformable is unknown.
Probab=99.37 E-value=1.1e-11 Score=112.73 Aligned_cols=164 Identities=16% Similarity=0.222 Sum_probs=103.9
Q ss_pred chhhhhhHhcCCCCCCEEEeccCchhhcCChhHHHhhhccCccCceEEeChhhHHHHHhhcccccccccccCCCccceee
Q 026783 20 CLIITSCISARIRTIDAVIITHSHADAIGGLDDLRDWTNNVQRHIPIYVAMRDFEVMKKTHYYLVDTSGIIPGAAVSELQ 99 (233)
Q Consensus 20 ~~l~~~~~~~~~~~i~~v~iTH~H~DH~ggl~~l~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~g~~~~~~~ 99 (233)
..+++.+...+++ +|++++||.|.||+||+..+.+.++ ..+++.+.... .. + ..
T Consensus 478 ~~l~p~L~~~Gi~-ID~lilTH~d~DHiGGl~~ll~~~~----v~~i~~~~~~~----~~------------~-----~~ 531 (662)
T TIGR00361 478 KVIIPFLTAKGIK-LEALILSHADQDHIGGAEIILKHHP----VKRLVIPKGFV----EE------------G-----VA 531 (662)
T ss_pred HHHHHHHHHcCCC-cCEEEECCCchhhhCcHHHHHHhCC----ccEEEeccchh----hC------------C-----Cc
Confidence 4577888888897 9999999999999999999988653 34677765410 00 0 01
Q ss_pred ee-eeCCCceEECCEEEEEEEecC----CCCCceeEEEEc----cEEEcCCCCCCCcccc-cc--cCCCcEEEEcCcCCC
Q 026783 100 FN-IIDEEPFTVQDLKITPLPVWH----GAGYRSLGFRFG----NICYISDVSEIPEETY-PF--LQDCEILIMDALRPD 167 (233)
Q Consensus 100 ~~-~~~~~~~~~~~~~i~~~~~~H----~~g~~s~~~~i~----~i~~~gD~~~~~~~~~-~~--~~~~d~li~e~~~~~ 167 (233)
.. ...|+.+++++.+++.+.... ..+..|+.++++ +++|+||.+...|+.+ +. ..++|++.+
T Consensus 532 ~~~~~~G~~~~~~~~~~~vL~P~~~~~~~~N~~S~vl~i~~~~~~~L~tGD~~~~~E~~l~~~~~~l~~dvLk~------ 605 (662)
T TIGR00361 532 IEECKRGDVWQWQGLQFHVLSPEAPDPASKNNHSCVLWVDDGGNSWLLTGDLEAEGEQEVMRVFPNIKADVLQV------ 605 (662)
T ss_pred eEecCCCCEEeECCEEEEEECCCCccCCCCCCCceEEEEEECCeeEEEecCCCHHHHHHHHhcccCcCccEEEe------
Confidence 11 225778889998888763221 113467777775 8999999977544322 11 125778877
Q ss_pred CCCCCCCCHH--HHHHHHHHcCCCeEEEEeeccCCChhHHHHHHHhhhhcCCCce
Q 026783 168 RSSSTHFGLP--RALEEVRKIQPKRTLFIGMMHLMDHEKVNEELLKLMETEGLDV 220 (233)
Q Consensus 168 ~~~~~H~~~~--~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~~~v 220 (233)
+|.+.. ...+++++++|+.++++...++..... .+++.+..++.+.++
T Consensus 606 ----~HHGS~~Sss~~fl~~v~P~~aiiS~g~~N~yghP-~~~vl~rl~~~g~~~ 655 (662)
T TIGR00361 606 ----GHHGSKTSTSEELIQQVQPKVAIISAGRNNRWHHP-HQKVLQRLQRHSIRV 655 (662)
T ss_pred ----CCCCCCCCChHHHHHhcCCCEEEEECCCCCCCCCC-hHHHHHHHHHCCCeE
Confidence 233332 245788999999998876654433222 233334444454443
No 31
>PRK11921 metallo-beta-lactamase/flavodoxin domain-containing protein; Provisional
Probab=99.36 E-value=5.3e-12 Score=108.31 Aligned_cols=94 Identities=18% Similarity=0.308 Sum_probs=70.9
Q ss_pred CCCCCCEEEeccCchhhcCChhHHHhhhccCccCceEEeChhhHHHHHhhcccccccccccCCCccceeeeeee-CCCce
Q 026783 30 RIRTIDAVIITHSHADAIGGLDDLRDWTNNVQRHIPIYVAMRDFEVMKKTHYYLVDTSGIIPGAAVSELQFNII-DEEPF 108 (233)
Q Consensus 30 ~~~~i~~v~iTH~H~DH~ggl~~l~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~~ 108 (233)
++++|++|++||.|+||+||++.+.+.++ .++||+++...+.+..... . ......+ +++++
T Consensus 66 ~~~~Id~IilTH~H~DHiggl~~l~~~~p----~a~V~~~~~~~~~l~~~~~----------~----~~~~~~v~~g~~l 127 (394)
T PRK11921 66 DLDKIDYIVANHGEIDHSGALPELMKEIP----DTPIYCTKNGAKSLKGHYH----------Q----DWNFVVVKTGDRL 127 (394)
T ss_pred CcccCCEEEeCCCCCchhhHHHHHHHHCC----CCEEEECHHHHHHHHHHhC----------C----CCceEEeCCCCEE
Confidence 56789999999999999999999987654 6899999988777654321 0 0122334 47899
Q ss_pred EECCEEEEEEEec--CCCCCceeEEEEc-cEEEcCCC
Q 026783 109 TVQDLKITPLPVW--HGAGYRSLGFRFG-NICYISDV 142 (233)
Q Consensus 109 ~~~~~~i~~~~~~--H~~g~~s~~~~i~-~i~~~gD~ 142 (233)
++|+.++++++++ |+++ +.+.|.-+ +++|+||+
T Consensus 128 ~lG~~~l~~i~tP~~H~p~-~~~~y~~~~~vLFsgD~ 163 (394)
T PRK11921 128 EIGSNELIFIEAPMLHWPD-SMFTYLTGDNILFSNDA 163 (394)
T ss_pred eeCCeEEEEEeCCCCCCCC-ceEEEEcCCCEEEecCc
Confidence 9999999988555 8884 45555554 89999998
No 32
>PRK10241 hydroxyacylglutathione hydrolase; Provisional
Probab=99.36 E-value=7.8e-12 Score=100.87 Aligned_cols=109 Identities=18% Similarity=0.253 Sum_probs=72.8
Q ss_pred eeeEEEeeecCccchhhhh---------hHhcCCCCCCEEEeccCchhhcCChhHHHhhhccCccCceEEeChhhHHHHH
Q 026783 7 TIALFVGFLPMGTCLIITS---------CISARIRTIDAVIITHSHADAIGGLDDLRDWTNNVQRHIPIYVAMRDFEVMK 77 (233)
Q Consensus 7 ~~~~~~~~~~~~~~~l~~~---------~~~~~~~~i~~v~iTH~H~DH~ggl~~l~~~~~~~~~~~~v~~~~~~~~~l~ 77 (233)
|+++++.. ..+.++++|. +...+. ++++|++||.|+||+||+..+.+.++ .++||++.....
T Consensus 12 Ny~~li~~-~~~~~ilIDpg~~~~vl~~l~~~g~-~l~~IllTH~H~DHigG~~~l~~~~~----~~~V~~~~~~~~--- 82 (251)
T PRK10241 12 NYIWVLND-EAGRCLIVDPGEAEPVLNAIAENNW-QPEAIFLTHHHHDHVGGVKELVEKFP----QIVVYGPQETQD--- 82 (251)
T ss_pred eEEEEEEc-CCCcEEEECCCChHHHHHHHHHcCC-ccCEEEeCCCCchhhccHHHHHHHCC----CCEEEecccccc---
Confidence 55555433 3345556553 333333 68999999999999999999988653 578998764311
Q ss_pred hhcccccccccccCCCccceeeeeeeCCCceEECCEEEEEEEec-CCCCCceeEEEEccEEEcCCCCC
Q 026783 78 KTHYYLVDTSGIIPGAAVSELQFNIIDEEPFTVQDLKITPLPVW-HGAGYRSLGFRFGNICYISDVSE 144 (233)
Q Consensus 78 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-H~~g~~s~~~~i~~i~~~gD~~~ 144 (233)
.+ .....-+|+.+.+++.+++.++++ |++ .+++|..+.++|+||+-.
T Consensus 83 -------------~~-----~~~~v~~g~~i~ig~~~~~vi~tPGHT~--ghi~~~~~~~lFtGDtlf 130 (251)
T PRK10241 83 -------------KG-----TTQVVKDGETAFVLGHEFSVFATPGHTL--GHICYFSKPYLFCGDTLF 130 (251)
T ss_pred -------------cC-----CceEeCCCCEEEeCCcEEEEEEcCCCCc--cceeeecCCcEEEcCeec
Confidence 01 011112478899998888877655 887 466665568999999843
No 33
>PRK05452 anaerobic nitric oxide reductase flavorubredoxin; Provisional
Probab=99.32 E-value=1.8e-11 Score=107.11 Aligned_cols=95 Identities=19% Similarity=0.381 Sum_probs=69.2
Q ss_pred CCCCCCEEEeccCchhhcCChhHHHhhhccCccCceEEeChhhHHHHHhhcccccccccccCCCccceeeeeee-CCCce
Q 026783 30 RIRTIDAVIITHSHADAIGGLDDLRDWTNNVQRHIPIYVAMRDFEVMKKTHYYLVDTSGIIPGAAVSELQFNII-DEEPF 108 (233)
Q Consensus 30 ~~~~i~~v~iTH~H~DH~ggl~~l~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~~ 108 (233)
++.+|++|++||.|.||+||++.+.+.++ +++||+++.....+..... .+..++..+ +|+.+
T Consensus 68 ~~~~Id~IilTH~H~DH~Ggl~~Ll~~~p----~a~V~~s~~~~~~l~~~~~-------------~~~~~~~~v~~G~~l 130 (479)
T PRK05452 68 DLADIDYIVINHAEEDHAGALTELMAQIP----DTPIYCTANAIDSINGHHH-------------HPEWNFNVVKTGDTL 130 (479)
T ss_pred CHhhCCEEEeCCCCcchhchHHHHHHHCC----CCEEEECHHHHHHHHHhhc-------------CCcCeEEEeCCCCEE
Confidence 45689999999999999999999987653 6899999988877654311 011234555 47899
Q ss_pred EEC-CEEEEEEEec--CCCCCceeEEEEc-cEEEcCCC
Q 026783 109 TVQ-DLKITPLPVW--HGAGYRSLGFRFG-NICYISDV 142 (233)
Q Consensus 109 ~~~-~~~i~~~~~~--H~~g~~s~~~~i~-~i~~~gD~ 142 (233)
++| +.+++.++++ |+++ +.+.|.-+ +++|+||.
T Consensus 131 ~lG~~~~l~~i~tP~~H~pg-s~~~y~~~~~vLFsgD~ 167 (479)
T PRK05452 131 DIGNGKQLIFVETPMLHWPD-SMMTYLTGDAVLFSNDA 167 (479)
T ss_pred ecCCCcEEEEEECCCCCCCC-ceEEEEcCCCEEEeccc
Confidence 998 4677766664 8874 44445544 89999996
No 34
>PF02112 PDEase_II: cAMP phosphodiesterases class-II; InterPro: IPR000396 Cyclic-AMP phosphodiesterase (3.1.4.17 from EC) (PDE) catalyses the hydrolysis of cAMP to the corresponding nucleoside 5' monophosphate. On the basis of sequence similarity, most PDEs can be grouped together [], but some enzymes lie apart from the main family and represent a second distinct class [] that includes PDEs from Dictyostelium and yeast. This entry contains class-II cyclic-AMP phosphodiesterases.; GO: 0004115 3',5'-cyclic-AMP phosphodiesterase activity, 0006198 cAMP catabolic process
Probab=99.32 E-value=5.5e-11 Score=98.57 Aligned_cols=195 Identities=17% Similarity=0.240 Sum_probs=115.0
Q ss_pred CCCCEEEeccCchhhcCChhHHHhhhccC-ccCceEEeChhhHHHHHhh-cccc-cccccccC-CCccceeeeeeeC-CC
Q 026783 32 RTIDAVIITHSHADAIGGLDDLRDWTNNV-QRHIPIYVAMRDFEVMKKT-HYYL-VDTSGIIP-GAAVSELQFNIID-EE 106 (233)
Q Consensus 32 ~~i~~v~iTH~H~DH~ggl~~l~~~~~~~-~~~~~v~~~~~~~~~l~~~-~~~~-~~~~~~~~-g~~~~~~~~~~~~-~~ 106 (233)
+.|...||||.|.||+.|+-.-....... ..+-+||+-+.+.+.+++. |... ++...... +......+...+. +.
T Consensus 78 ~~I~~ylItH~HLDHi~gLvinsp~~~~~~~~~K~i~gl~~ti~alk~hiFN~~iWPNl~~~~~~~~~~~~~~~~l~~~~ 157 (335)
T PF02112_consen 78 NHIKGYLITHPHLDHIAGLVINSPEDYLPNSSPKTIYGLPSTIEALKNHIFNDIIWPNLSDEGEGDYLYKYRYFDLSPGE 157 (335)
T ss_pred HhhheEEecCCchhhHHHHHhcCcccccccCCCCcEEECHHHHHHHHHcccCCccCCCCCCcCcccceeeeeeeeccccc
Confidence 47899999999999999985332222111 1367899999999999865 3321 11111110 1001011122221 11
Q ss_pred ceEE-------------CCEEEEEEEecCCCCC----ceeEEEEc------cEEEcCCCCCCC-------cccccc----
Q 026783 107 PFTV-------------QDLKITPLPVWHGAGY----RSLGFRFG------NICYISDVSEIP-------EETYPF---- 152 (233)
Q Consensus 107 ~~~~-------------~~~~i~~~~~~H~~g~----~s~~~~i~------~i~~~gD~~~~~-------~~~~~~---- 152 (233)
...+ .+..++++|+.|+... .|.+|.+. .++|.||+++-. +++++.
T Consensus 158 ~~~~~~~~~s~~~~~~~~~~~v~~~~l~H~~~~~~~~~SsAfli~~~~t~~~il~fGD~e~Ds~s~~~~~~~iW~~~ap~ 237 (335)
T PF02112_consen 158 LIPLNNTTLSVIPNEFPNSSSVTPFPLSHGNSVSSPVYSSAFLIRDNITGDEILFFGDTEPDSVSKSPRNQKIWRYAAPK 237 (335)
T ss_pred eeeccccccccccccccccccceeeecCCCCcccCCCcceEEEEEeCCCCCEEEEEeCCCCCccccCchHHHHHHHHHhh
Confidence 1111 1356788999998742 27888885 799999998621 112222
Q ss_pred --cCCCcEEEEcCcCCCC----CCCCCCCHHHHHHHHHHcC-----------CCeEEEEeeccCCChh-----HHHHHHH
Q 026783 153 --LQDCEILIMDALRPDR----SSSTHFGLPRALEEVRKIQ-----------PKRTLFIGMMHLMDHE-----KVNEELL 210 (233)
Q Consensus 153 --~~~~d~li~e~~~~~~----~~~~H~~~~~~~~~~~~~~-----------~~~~~~~h~~~~~~~~-----~~~~~~~ 210 (233)
.++....++||.+++. .-.||+++.-.++.++.+. -=+++++|.-...... ....+++
T Consensus 238 I~~~~LkaI~IEcS~~~~~~d~~LyGHLtP~~Li~EL~~L~~~~~~~~~~L~gL~VIItHIK~~~~~~~dpr~~Il~il~ 317 (335)
T PF02112_consen 238 IASGKLKAIFIECSYPNSQPDSQLYGHLTPKHLIEELKVLASKVGQTSPPLKGLNVIITHIKPSLNDGPDPRDVILEILR 317 (335)
T ss_pred ccccccCEEEEEeCCCCCCCchHhhccCCHHHHHHHHHHHHhccccccCCCCCCeEEEEEeCCcccCCCChHHHHHHHHH
Confidence 2357889999998853 4689999988777665441 1268899976644311 1233455
Q ss_pred hhhhc--CCCceEEcccC
Q 026783 211 KLMET--EGLDVQLSYDG 226 (233)
Q Consensus 211 ~~~~~--~~~~v~~a~dg 226 (233)
++.+. .|.++.++..|
T Consensus 318 qL~~~n~LGv~fii~~QG 335 (335)
T PF02112_consen 318 QLAEENNLGVNFIIPEQG 335 (335)
T ss_pred HHHhccCCceEEEEcCCC
Confidence 55554 55566666544
No 35
>PRK11539 ComEC family competence protein; Provisional
Probab=99.29 E-value=3.3e-11 Score=111.07 Aligned_cols=141 Identities=20% Similarity=0.180 Sum_probs=93.5
Q ss_pred chhhhhhHhcCCCCCCEEEeccCchhhcCChhHHHhhhccCccCceEEeChhhHHHHHhhcccccccccccCCCccceee
Q 026783 20 CLIITSCISARIRTIDAVIITHSHADAIGGLDDLRDWTNNVQRHIPIYVAMRDFEVMKKTHYYLVDTSGIIPGAAVSELQ 99 (233)
Q Consensus 20 ~~l~~~~~~~~~~~i~~v~iTH~H~DH~ggl~~l~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~g~~~~~~~ 99 (233)
..+++.+...++ ++|++++||.|.||+||+..+.+.++ ..++|.+.... . .
T Consensus 539 ~~i~P~L~~~Gi-~lD~lilSH~d~DH~GGl~~Ll~~~~----~~~i~~~~~~~-----~--------------~----- 589 (755)
T PRK11539 539 QVIIPWLRWHGL-TPEGIILSHEHLDHRGGLASLLHAWP----MAWIRSPLNWA-----N--------------H----- 589 (755)
T ss_pred HHHHHHHHHcCC-CcCEEEeCCCCcccCCCHHHHHHhCC----cceeeccCccc-----C--------------c-----
Confidence 557777888888 69999999999999999999988654 45677654110 0 0
Q ss_pred eeeeCCCceEECCEEEEEE-EecCC---CCCceeEEEEc----cEEEcCCCCCCCcc-cccc---cCCCcEEEEcCcCCC
Q 026783 100 FNIIDEEPFTVQDLKITPL-PVWHG---AGYRSLGFRFG----NICYISDVSEIPEE-TYPF---LQDCEILIMDALRPD 167 (233)
Q Consensus 100 ~~~~~~~~~~~~~~~i~~~-~~~H~---~g~~s~~~~i~----~i~~~gD~~~~~~~-~~~~---~~~~d~li~e~~~~~ 167 (233)
.....|+.++.++.+++.+ |..+. .+..|+.++++ +++++||.+...|+ +.+. .-++|++.+
T Consensus 590 ~~~~~g~~~~~~~~~~~vL~P~~~~~~~~N~~S~Vl~i~~~~~~~LltGDi~~~~E~~Ll~~~~~~l~~dvL~v------ 663 (755)
T PRK11539 590 LPCVRGEQWQWQGLTFSVHWPLEQSNDAGNNDSCVIRVDDGKHSILLTGDLEAQAEQKLLSRYWQQLAATLLQV------ 663 (755)
T ss_pred ccccCCCeEeECCEEEEEEecCcccCCCCCCccEEEEEEECCEEEEEEeCCChHHHHHHHhcCccCcCCCEEEe------
Confidence 0012467778888888866 33232 12457777775 89999998764432 2211 125788877
Q ss_pred CCCCCCCCH--HHHHHHHHHcCCCeEEEEeeccC
Q 026783 168 RSSSTHFGL--PRALEEVRKIQPKRTLFIGMMHL 199 (233)
Q Consensus 168 ~~~~~H~~~--~~~~~~~~~~~~~~~~~~h~~~~ 199 (233)
+|.+. ....+++++++|+.++++-...+
T Consensus 664 ----pHHGS~tSss~~fl~~v~P~~aiiS~g~~N 693 (755)
T PRK11539 664 ----PHHGSNTSSSLPFIRAVNGKVALASASRYN 693 (755)
T ss_pred ----CCCCCCCCChHHHHHhcCCCEEEEeCCCCC
Confidence 23322 22457899999999988765443
No 36
>COG1237 Metal-dependent hydrolases of the beta-lactamase superfamily II [General function prediction only]
Probab=99.24 E-value=2e-10 Score=90.40 Aligned_cols=62 Identities=27% Similarity=0.455 Sum_probs=47.4
Q ss_pred EEEeeecC-ccchhhhh--hHhcCCCCCCEEEeccCchhhcCChhHHHhhhccCccCceEEeChhhHH
Q 026783 10 LFVGFLPM-GTCLIITS--CISARIRTIDAVIITHSHADAIGGLDDLRDWTNNVQRHIPIYVAMRDFE 74 (233)
Q Consensus 10 ~~~~~~~~-~~~~l~~~--~~~~~~~~i~~v~iTH~H~DH~ggl~~l~~~~~~~~~~~~v~~~~~~~~ 74 (233)
..++||.+ .+..++.. +++.++++||+++|||.|+||+|||+.+.+.. .++++||+++....
T Consensus 32 ~riLFDtG~~~~~ll~Na~~lgvd~~did~vvlSHgH~DH~GGL~~~~~~~---~~~i~v~ahp~af~ 96 (259)
T COG1237 32 TRILFDTGTDSDVLLHNARLLGVDLRDIDAVVLSHGHYDHTGGLPYLLEEN---NPGIPVYAHPDAFK 96 (259)
T ss_pred eEEEEeCCCCcHHHHHHHHHcCCCcccCcEEEEeCCCccccCchHhHHhcc---CCCceEEeChHHHh
Confidence 45677777 44445443 45667889999999999999999999887633 23789999998766
No 37
>PLN02962 hydroxyacylglutathione hydrolase
Probab=99.19 E-value=1.5e-10 Score=93.03 Aligned_cols=113 Identities=17% Similarity=0.190 Sum_probs=74.8
Q ss_pred ccceeeEEEeee--cCccchhhhhh----------HhcCCCCCCEEEeccCchhhcCChhHHHhhhccCccCceEEeChh
Q 026783 4 SFSTIALFVGFL--PMGTCLIITSC----------ISARIRTIDAVIITHSHADAIGGLDDLRDWTNNVQRHIPIYVAMR 71 (233)
Q Consensus 4 ~~~~~~~~~~~~--~~~~~~l~~~~----------~~~~~~~i~~v~iTH~H~DH~ggl~~l~~~~~~~~~~~~v~~~~~ 71 (233)
..+|++|+++-. ..+.++++|+. ++.....|.+|++||.|.||++|+..+.+.++ ++++|+.+.
T Consensus 20 ~~~~~~Yll~d~~~~~~~avlIDP~~~~~~~~l~~l~~~g~~i~~Il~TH~H~DHigg~~~l~~~~~----~a~v~~~~~ 95 (251)
T PLN02962 20 ESSTYTYLLADVSHPDKPALLIDPVDKTVDRDLSLVKELGLKLIYAMNTHVHADHVTGTGLLKTKLP----GVKSIISKA 95 (251)
T ss_pred CceeEEEEEEeCCCCCCEEEEECCCCCcHHHHHHHHHHCCCeeEEEEcCCCCchhHHHHHHHHHHCC----CCeEEeccc
Confidence 356888887652 24556666643 12223478999999999999999999987543 578887542
Q ss_pred hHHHHHhhcccccccccccCCCccceeeeeeeCCCceEECCEEEEEEEec-CCCCCceeEEEEc--------cEEEcCCC
Q 026783 72 DFEVMKKTHYYLVDTSGIIPGAAVSELQFNIIDEEPFTVQDLKITPLPVW-HGAGYRSLGFRFG--------NICYISDV 142 (233)
Q Consensus 72 ~~~~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-H~~g~~s~~~~i~--------~i~~~gD~ 142 (233)
. +.. .....-+++.+.+++.+++.+..+ |++ .+++|.+. +++|+||+
T Consensus 96 ~-------------------~~~---~d~~l~~g~~i~~g~~~l~vi~tPGHT~--g~v~~~~~d~~~~~~~~~lftGD~ 151 (251)
T PLN02962 96 S-------------------GSK---ADLFVEPGDKIYFGDLYLEVRATPGHTA--GCVTYVTGEGPDQPQPRMAFTGDA 151 (251)
T ss_pred c-------------------CCC---CCEEeCCCCEEEECCEEEEEEECCCCCc--CcEEEEeccCCCCCccceEEECCe
Confidence 1 000 111122578899999988866544 666 47777764 49999997
Q ss_pred CC
Q 026783 143 SE 144 (233)
Q Consensus 143 ~~ 144 (233)
-.
T Consensus 152 Lf 153 (251)
T PLN02962 152 LL 153 (251)
T ss_pred ec
Confidence 33
No 38
>KOG0813 consensus Glyoxylase [General function prediction only]
Probab=99.16 E-value=1.9e-10 Score=91.40 Aligned_cols=112 Identities=19% Similarity=0.237 Sum_probs=75.1
Q ss_pred cceeeEEEee-ecCccchhhhh--------hHhc---CCCCCCEEEeccCchhhcCChhHHHhhhccCccCceEEeChhh
Q 026783 5 FSTIALFVGF-LPMGTCLIITS--------CISA---RIRTIDAVIITHSHADAIGGLDDLRDWTNNVQRHIPIYVAMRD 72 (233)
Q Consensus 5 ~~~~~~~~~~-~~~~~~~l~~~--------~~~~---~~~~i~~v~iTH~H~DH~ggl~~l~~~~~~~~~~~~v~~~~~~ 72 (233)
..|++|++.. .......++|+ ++.. ....+.+||.||.|+||+||+..|.+..+ .++++|+..
T Consensus 11 ~~Ny~YLl~~~~~~~~a~~vDP~~pe~v~~~~~~~~~~~~~l~~Il~THhH~DHsGGn~~i~~~~~---~~~~v~g~~-- 85 (265)
T KOG0813|consen 11 QDNYMYLLGDGDKTIDADLVDPAEPEYVIPSLKKLDDENRRLTAILTTHHHYDHSGGNEDIKREIP---YDIKVIGGA-- 85 (265)
T ss_pred CCceEEEEecccceeeeeeecCcchHHHHHHHHhhhhccCceeEEEeccccccccCcHHHHHhhcc---CCcEEecCC--
Confidence 4678888877 33333333332 2222 56689999999999999999999988642 268888875
Q ss_pred HHHHHhhcccccccccccCCCccceeeeeeeCCCceEECCEEEEEEEec-CCCCCceeEEEEc-----cEEEcCCC
Q 026783 73 FEVMKKTHYYLVDTSGIIPGAAVSELQFNIIDEEPFTVQDLKITPLPVW-HGAGYRSLGFRFG-----NICYISDV 142 (233)
Q Consensus 73 ~~~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-H~~g~~s~~~~i~-----~i~~~gD~ 142 (233)
.+..+ | +....-+++.+.+++.+|+.+..+ |+. .++.|.+. ..+|+||+
T Consensus 86 ----~~r~~----------~-----i~~~~~~~e~~~~~g~~v~~l~TPgHT~--~hi~~~~~~~~~e~~iFtGDt 140 (265)
T KOG0813|consen 86 ----DDRIP----------G-----ITRGLKDGETVTVGGLEVRCLHTPGHTA--GHICYYVTESTGERAIFTGDT 140 (265)
T ss_pred ----hhcCc----------c-----ccccCCCCcEEEECCEEEEEEeCCCccC--CcEEEEeecCCCCCeEEeCCc
Confidence 11111 1 111122468999999999977655 666 46666654 69999998
No 39
>COG0426 FpaA Uncharacterized flavoproteins [Energy production and conversion]
Probab=99.16 E-value=1.7e-09 Score=90.56 Aligned_cols=96 Identities=17% Similarity=0.235 Sum_probs=77.0
Q ss_pred cCCCCCCEEEeccCchhhcCChhHHHhhhccCccCceEEeChhhHHHHHhhcccccccccccCCCccceeeeeeeC-CCc
Q 026783 29 ARIRTIDAVIITHSHADAIGGLDDLRDWTNNVQRHIPIYVAMRDFEVMKKTHYYLVDTSGIIPGAAVSELQFNIID-EEP 107 (233)
Q Consensus 29 ~~~~~i~~v~iTH~H~DH~ggl~~l~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~ 107 (233)
.++++||+|+++|.-+||+|+++.+++..+ +++|+|++...+.|....... ..+...+ |++
T Consensus 68 id~k~iDYIi~~H~ePDhsg~l~~ll~~~p----~a~ii~s~~~~~~L~~~~~~~--------------~~~~ivk~Gd~ 129 (388)
T COG0426 68 IDPKEIDYIIVNHTEPDHSGSLPELLELAP----NAKIICSKLAARFLKGFYHDP--------------EWFKIVKTGDT 129 (388)
T ss_pred cChhcCeEEEECCCCcchhhhHHHHHHhCC----CCEEEeeHHHHHHHHHhcCCc--------------cceeecCCCCE
Confidence 578899999999999999999999998765 799999999999988764211 1144454 789
Q ss_pred eEECCEEEEEEEe--cCCCCCceeEEEEc-cEEEcCCCC
Q 026783 108 FTVQDLKITPLPV--WHGAGYRSLGFRFG-NICYISDVS 143 (233)
Q Consensus 108 ~~~~~~~i~~~~~--~H~~g~~s~~~~i~-~i~~~gD~~ 143 (233)
+++|+.+++++++ .|+|+ .-+.|... +|+|++|..
T Consensus 130 ldlGg~tL~Fi~ap~LHWPd-~m~TYd~~~kILFS~D~f 167 (388)
T COG0426 130 LDLGGHTLKFIPAPFLHWPD-TMFTYDPEDKILFSCDAF 167 (388)
T ss_pred eccCCcEEEEEeCCCCCCCC-ceeEeecCCcEEEccccc
Confidence 9999988887765 48884 66667766 999999974
No 40
>PF00753 Lactamase_B: Metallo-beta-lactamase superfamily; InterPro: IPR001279 Apart from the beta-lactamases and metallo-beta-lactamases, a number of other proteins contain this domain []. These proteins include thiolesterases, members of the glyoxalase II family, that catalyse the hydrolysis of S-D-lactoyl-glutathione to form glutathione and D-lactic acid and a competence protein that is essential for natural transformation in Neisseria gonorrhoeae and could be a transporter involved in DNA uptake. Except for the competence protein these proteins bind two zinc ions per molecule as cofactor.; GO: 0016787 hydrolase activity; PDB: 3H3E_A 3Q6V_B 3SD9_B 3IOF_A 2GKL_A 1X8I_A 3FAI_A 2QDS_A 3IOG_A 3F9O_A ....
Probab=99.07 E-value=1.8e-10 Score=88.14 Aligned_cols=31 Identities=45% Similarity=0.669 Sum_probs=28.2
Q ss_pred HhcCCCCCCEEEeccCchhhcCChhHHHhhh
Q 026783 27 ISARIRTIDAVIITHSHADAIGGLDDLRDWT 57 (233)
Q Consensus 27 ~~~~~~~i~~v~iTH~H~DH~ggl~~l~~~~ 57 (233)
.+....+|++|++||.|.||+||+..+.+..
T Consensus 37 ~~~~~~~i~~vi~TH~H~DH~ggl~~~~~~~ 67 (194)
T PF00753_consen 37 LGISGEDIDAVILTHAHPDHIGGLPELLEAG 67 (194)
T ss_dssp HHHTGGGEEEEEESSSSHHHHTTHHHHHHHT
T ss_pred hhccCCCeEEEEECccccccccccccccccc
Confidence 4567889999999999999999999999875
No 41
>COG0491 GloB Zn-dependent hydrolases, including glyoxylases [General function prediction only]
Probab=99.02 E-value=4.2e-09 Score=84.26 Aligned_cols=116 Identities=16% Similarity=0.234 Sum_probs=68.2
Q ss_pred hhhhhHhcCCCCCCEEEeccCchhhcCChhHHHhhhccCccCceEEeChhhHHHHHhhccccccc-ccccCCCccceeee
Q 026783 22 IITSCISARIRTIDAVIITHSHADAIGGLDDLRDWTNNVQRHIPIYVAMRDFEVMKKTHYYLVDT-SGIIPGAAVSELQF 100 (233)
Q Consensus 22 l~~~~~~~~~~~i~~v~iTH~H~DH~ggl~~l~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~~-~~~~~g~~~~~~~~ 100 (233)
+.+.+...+. +|++|++||.|.||+||+..+.+... .++++.++................ .... ..+......
T Consensus 52 ~~~~l~~~~~-~i~~vilTH~H~DH~gg~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 125 (252)
T COG0491 52 LLEALAALGL-DVDAILLTHGHFDHIGGAAVLKEAFG----AAPVIAPAEVPLLLREEILRKAGVTAEAY-AAPGASPLR 125 (252)
T ss_pred HHHHHHHcCC-ChheeeecCCchhhhccHHHHHhhcC----CceEEccchhhhhhhcccccccccccccC-CCCccccce
Confidence 3334444445 99999999999999999999987542 367755555444443322111110 0000 001011111
Q ss_pred eeeCCCceEECCEEEEEEEe-cCCCCCceeEEEEc--cEEEcCCCCCC
Q 026783 101 NIIDEEPFTVQDLKITPLPV-WHGAGYRSLGFRFG--NICYISDVSEI 145 (233)
Q Consensus 101 ~~~~~~~~~~~~~~i~~~~~-~H~~g~~s~~~~i~--~i~~~gD~~~~ 145 (233)
...+++.+.+++..++.+++ .|++ .+++|.+. +++|+||.-..
T Consensus 126 ~~~~~~~~~~~~~~~~~i~tpGHT~--g~~~~~~~~~~~l~~gD~~~~ 171 (252)
T COG0491 126 ALEDGDELDLGGLELEVLHTPGHTP--GHIVFLLEDGGVLFTGDTLFA 171 (252)
T ss_pred ecCCCCEEEecCeEEEEEECCCCCC--CeEEEEECCccEEEecceecc
Confidence 22256788898855555544 4887 47777777 49999998554
No 42
>COG5212 PDE1 Low-affinity cAMP phosphodiesterase [Signal transduction mechanisms]
Probab=99.00 E-value=1.2e-08 Score=80.54 Aligned_cols=195 Identities=21% Similarity=0.284 Sum_probs=116.6
Q ss_pred CCCCEEEeccCchhhcCChhHHHhhhccCccCceEEeChhhHHHHHhhcccccccccccCCCccceeeeeeeCC-C--ce
Q 026783 32 RTIDAVIITHSHADAIGGLDDLRDWTNNVQRHIPIYVAMRDFEVMKKTHYYLVDTSGIIPGAAVSELQFNIIDE-E--PF 108 (233)
Q Consensus 32 ~~i~~v~iTH~H~DH~ggl~~l~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~-~--~~ 108 (233)
..|...+|||+|.||+.|+-.-.... ..+++-+||+-+.+.+.+++..-+|.- |+.+.......++.+.+.+ + ..
T Consensus 111 Q~I~~y~ITH~HLDHIsGlVinSp~~-~~qkkkTI~gl~~tIDvL~khvFN~lv-WP~lt~~gs~~~~~qvv~P~~~~sl 188 (356)
T COG5212 111 QSINSYFITHAHLDHISGLVINSPDD-SKQKKKTIYGLADTIDVLRKHVFNWLV-WPNLTDSGSGTYRMQVVRPAQSLSL 188 (356)
T ss_pred hhhhheEeccccccchhceeecCccc-cccCCceEEechhHHHHHHHHhhcccc-cCCcccccCceEEEEEeChhHeeee
Confidence 57899999999999999975432221 123578999999999999876422210 0001111112466777754 3 44
Q ss_pred EECCEEEEEEEecCCC--CCc--eeEEEEc------cEEEcCCCCCCCc---c----ccccc------CCCcEEEEcCcC
Q 026783 109 TVQDLKITPLPVWHGA--GYR--SLGFRFG------NICYISDVSEIPE---E----TYPFL------QDCEILIMDALR 165 (233)
Q Consensus 109 ~~~~~~i~~~~~~H~~--g~~--s~~~~i~------~i~~~gD~~~~~~---~----~~~~~------~~~d~li~e~~~ 165 (233)
.+-..++.+||+.|+. |.+ |..|.+. -++|+||+++-.. + ++..+ ......++||..
T Consensus 189 t~t~l~~~pfpv~Hg~ktG~p~ySs~~lfr~nkS~~~f~~fGDvepD~vese~ll~~~Wr~~ae~I~q~~LkgiliEcS~ 268 (356)
T COG5212 189 TLTRLTGEPFPVSHGKKTGSPSYSSMLLFRSNKSNEFFAYFGDVEPDDVESEKLLDTVWRKLAEKITQQQLKGILIECSY 268 (356)
T ss_pred eeeeecceeeeccCCcccCCcccceEEEEecCCCcceEEEecCCCcchhhhhHHHHHHHHHHHHhhhHHhhCceEEEecC
Confidence 4556788999999986 323 3456664 4889999976321 1 11111 236778899998
Q ss_pred CCCC----CCCCCCHHHHHHHHHHc----------CCCeEEEEeeccCCChh-----HHHHHHHhhhhc---CCCceEEc
Q 026783 166 PDRS----SSTHFGLPRALEEVRKI----------QPKRTLFIGMMHLMDHE-----KVNEELLKLMET---EGLDVQLS 223 (233)
Q Consensus 166 ~~~~----~~~H~~~~~~~~~~~~~----------~~~~~~~~h~~~~~~~~-----~~~~~~~~~~~~---~~~~v~~a 223 (233)
++.+ -.+|+++.-.+..+..+ ..-.++++|........ -..++++-++++ -+..+.++
T Consensus 269 P~~~~~~~LfGH~~P~~L~nEL~~L~~l~~s~~~l~gL~vviTHiKs~p~q~~~pr~~ILeeL~fLae~~nl~~~~f~i~ 348 (356)
T COG5212 269 PNDVADNKLFGHMTPTWLLNELKKLEQLSGSGQPLKGLPVVITHIKSSPQQGQDPRKLILEELQFLAEQGNLMGIEFIIM 348 (356)
T ss_pred CCCCChhHhhcccChHHHHHHHHHHHHHhccCCCCCCccEEEEeccCcccccCCHHHHHHHHHHHHHhcCCccceEEEee
Confidence 8654 36999987665554433 23477889876655321 123444433332 23345666
Q ss_pred ccCeE
Q 026783 224 YDGLR 228 (233)
Q Consensus 224 ~dg~~ 228 (233)
..|..
T Consensus 349 ~~G~~ 353 (356)
T COG5212 349 EQGDS 353 (356)
T ss_pred ecccc
Confidence 66654
No 43
>KOG1136 consensus Predicted cleavage and polyadenylation specificity factor (CPSF subunit) [RNA processing and modification]
Probab=98.97 E-value=1e-08 Score=83.24 Aligned_cols=183 Identities=20% Similarity=0.255 Sum_probs=102.6
Q ss_pred CCCCEEEeccCchhhcCChhHHHhhhccCccCceEEeChhhHHHH---Hhhccc-ccccccc---cCCCccce--eeeee
Q 026783 32 RTIDAVIITHSHADAIGGLDDLRDWTNNVQRHIPIYVAMRDFEVM---KKTHYY-LVDTSGI---IPGAAVSE--LQFNI 102 (233)
Q Consensus 32 ~~i~~v~iTH~H~DH~ggl~~l~~~~~~~~~~~~v~~~~~~~~~l---~~~~~~-~~~~~~~---~~g~~~~~--~~~~~ 102 (233)
+.||-|+|||.|.||||+||++.+... ..-+||.+-.+.... ...+.. ..+.... +....+.. -.+..
T Consensus 59 ~~idCvIIsHFHlDHcGaLPyfsEv~G---Y~GPIYMt~PTkaicPvlLeDyRkv~vd~kGe~n~FT~q~I~nCMKKVv~ 135 (501)
T KOG1136|consen 59 DAIDCVIISHFHLDHCGALPYFSEVVG---YDGPIYMTYPTKAICPVLLEDYRKVAVDRKGESNFFTTQDIKNCMKKVVA 135 (501)
T ss_pred cceeEEEEeeecccccccccchHhhhC---CCCceEEecchhhhchHHHHHHHHHhccccCcccceeHHHHHHHHhheeE
Confidence 368999999999999999999987542 257888875544321 111110 0010000 00000000 01112
Q ss_pred eC-CCceEEC-CEEEEEEEecCCCCCceeEEEEc--cEEEcCCCCCCCccccc--cc--CCCcEEEEcCcCCCCCC-CCC
Q 026783 103 ID-EEPFTVQ-DLKITPLPVWHGAGYRSLGFRFG--NICYISDVSEIPEETYP--FL--QDCEILIMDALRPDRSS-STH 173 (233)
Q Consensus 103 ~~-~~~~~~~-~~~i~~~~~~H~~g~~s~~~~i~--~i~~~gD~~~~~~~~~~--~~--~~~d~li~e~~~~~~~~-~~H 173 (233)
++ .+++.++ ++.|+++-+.|..|...+..+++ +++|+||-...+++-+- ++ -..|+|+.|+++..... +-.
T Consensus 136 i~l~qt~~vD~dl~IrayYAGHVLGAaMf~ikvGd~svvYTGDYnmTpDrHLGaA~id~~rpdlLIsESTYattiRdskr 215 (501)
T KOG1136|consen 136 IDLHQTIQVDEDLQIRAYYAGHVLGAAMFYIKVGDQSVVYTGDYNMTPDRHLGAAWIDKCRPDLLISESTYATTIRDSKR 215 (501)
T ss_pred eeehheEEecccceeeeeecccccceeEEEEEecceeEEEecCccCCcccccchhhhccccCceEEeeccceeeeccccc
Confidence 22 3566664 78999999999997555555666 99999999877775332 11 15899999998763221 111
Q ss_pred CCHHHHHHHHHHc-CCCeEEEEeeccCCChhHHHHHHHhhhhcCC
Q 026783 174 FGLPRALEEVRKI-QPKRTLFIGMMHLMDHEKVNEELLKLMETEG 217 (233)
Q Consensus 174 ~~~~~~~~~~~~~-~~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~ 217 (233)
.--.+.++.+-+. ...--+++....+.+.+|.--++..+.++-+
T Consensus 216 ~rERdFLk~VhecVa~GGkvlIPvFALGRAQElCiLLd~YWERm~ 260 (501)
T KOG1136|consen 216 CRERDFLKKVHECVARGGKVLIPVFALGRAQELCILLDDYWERMN 260 (501)
T ss_pred hhHHHHHHHHHHHHhcCCeEEEEeeecchHHHHHHHHHHHHHhhc
Confidence 1112333333332 2223334455677766655444555555433
No 44
>KOG1361 consensus Predicted hydrolase involved in interstrand cross-link repair [Replication, recombination and repair]
Probab=98.95 E-value=1.6e-08 Score=86.66 Aligned_cols=135 Identities=21% Similarity=0.272 Sum_probs=97.8
Q ss_pred EEEeeecCccchhhhhhHhcCCCCCCEEEeccCchhhcCChhHHHhhhccCccCceEEeChhhHHHHHhhcccccccccc
Q 026783 10 LFVGFLPMGTCLIITSCISARIRTIDAVIITHSHADAIGGLDDLRDWTNNVQRHIPIYVAMRDFEVMKKTHYYLVDTSGI 89 (233)
Q Consensus 10 ~~~~~~~~~~~~l~~~~~~~~~~~i~~v~iTH~H~DH~ggl~~l~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~~~~~ 89 (233)
+-+..+.++.-..+|...........+-|+||.|.||..|+..-.. +-++||++.++..+......
T Consensus 89 ~~~~~~~p~~~f~VD~f~~~~~~~~s~yFLsHFHSDHy~GL~~sW~-------~p~lYCS~ita~Lv~~~~~v------- 154 (481)
T KOG1361|consen 89 LHVIKVLPGGEFSVDAFRYGHIEGCSAYFLSHFHSDHYIGLTKSWS-------HPPLYCSPITARLVPLKVSV------- 154 (481)
T ss_pred CcceeecCCCcEEEehhhcCCccccceeeeeccccccccccccccc-------CCcccccccchhhhhhhccc-------
Confidence 3344455666677887777777789999999999999998877543 34599999998887665321
Q ss_pred cCCCccceeeeeeeC-CCceEECCEEEEEEEecCCCCCceeEEEEc-----cEEEcCCCCCCCccccc----cc-CCCcE
Q 026783 90 IPGAAVSELQFNIID-EEPFTVQDLKITPLPVWHGAGYRSLGFRFG-----NICYISDVSEIPEETYP----FL-QDCEI 158 (233)
Q Consensus 90 ~~g~~~~~~~~~~~~-~~~~~~~~~~i~~~~~~H~~g~~s~~~~i~-----~i~~~gD~~~~~~~~~~----~~-~~~d~ 158 (233)
..-..+.++ ++.+.+.++.++.+++.|++| ++.|.+. .++++||.....+ +.. .. ...|.
T Consensus 155 ------~~~~i~~l~l~~~~~i~~~~vt~ldAnHCPG--a~mf~F~~~~~~~~lhtGDFR~s~~-m~~~p~~~~~~~i~~ 225 (481)
T KOG1361|consen 155 ------TKQSIQALDLNQPLEIPGIQVTLLDANHCPG--AVMFLFELSFGPCILHTGDFRASAD-MSKEPALTLEQTIDI 225 (481)
T ss_pred ------ChhhceeecCCCceeecceEEEEeccccCCC--ceEEEeecCCCceEEecCCcccChh-hhhChHHhcCCccce
Confidence 111234444 578888899999999999996 4444443 8999999987543 322 22 46899
Q ss_pred EEEcCcCCC
Q 026783 159 LIMDALRPD 167 (233)
Q Consensus 159 li~e~~~~~ 167 (233)
+..|+++-+
T Consensus 226 lyLDtTycn 234 (481)
T KOG1361|consen 226 LYLDTTYCN 234 (481)
T ss_pred EEEeecccC
Confidence 999998764
No 45
>KOG3798 consensus Predicted Zn-dependent hydrolase (beta-lactamase superfamily) [General function prediction only]
Probab=98.85 E-value=5.3e-08 Score=76.17 Aligned_cols=175 Identities=18% Similarity=0.184 Sum_probs=111.4
Q ss_pred hHhcCCCCCCEEEeccCchhhcCChhHHHhhhccCccCce-EEeChhhHHHHHhhcccccccccccCCCccceeeeeeeC
Q 026783 26 CISARIRTIDAVIITHSHADAIGGLDDLRDWTNNVQRHIP-IYVAMRDFEVMKKTHYYLVDTSGIIPGAAVSELQFNIID 104 (233)
Q Consensus 26 ~~~~~~~~i~~v~iTH~H~DH~ggl~~l~~~~~~~~~~~~-v~~~~~~~~~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 104 (233)
....++.++|-++.||.|+||.. ...+..+... ..+ =++|...+.++... |.. -......
T Consensus 125 ~~~~~~p~~d~~~vsh~h~dhld-~~~~~~~~~~---~~~~wfvp~g~k~~m~~~------------gc~---~v~el~w 185 (343)
T KOG3798|consen 125 MKLEDLPDLDFAVVSHDHYDHLD-ADAVKKITDR---NPQIWFVPLGMKKWMEGD------------GSS---TVTELNW 185 (343)
T ss_pred hhhccCCCCceeccccccccccc-hHHHHhhhcc---CccceeehhhhhheecCC------------CCC---ceeEeec
Confidence 34456889999999999999994 5555444321 122 44566555554432 211 0111122
Q ss_pred CC--ce-EEC-CEEEEEEEecCCCCC------c---eeEEEEc---cEEEcCCCCCCCccc---ccccCCCcEEEEcCcC
Q 026783 105 EE--PF-TVQ-DLKITPLPVWHGAGY------R---SLGFRFG---NICYISDVSEIPEET---YPFLQDCEILIMDALR 165 (233)
Q Consensus 105 ~~--~~-~~~-~~~i~~~~~~H~~g~------~---s~~~~i~---~i~~~gD~~~~~~~~---~~~~~~~d~li~e~~~ 165 (233)
++ .+ .-+ -++|.+.|++|..+. . +..-+++ +++|+|||+++++.+ -+.....|+..+.+..
T Consensus 186 we~~~~vkn~~~~ti~~tPaqHw~~R~L~D~Nk~LW~sw~v~g~~nrfffaGDTGyc~~~F~~IgerfGpfdLAaiPiGa 265 (343)
T KOG3798|consen 186 GESSEFVKNGKTYTIWCLPAQHWGQRGLFDRNKRLWSSWAVIGENNRFFFAGDTGYCDGEFKKIGERFGPFDLAAIPIGA 265 (343)
T ss_pred cchhceecCCcEEEEEEcchhhhcccccccCCcceeeeeEEecCCceEEecCCCCcccHHHHHHHHhcCCcceeeccccc
Confidence 32 22 222 247778899997531 1 1222333 899999999998533 3344458888888876
Q ss_pred CCC---CCCCCCCHHHHHHHHHHcCCCeEEEEeeccCCC----hhHHHHHHHhhhhcCCCc
Q 026783 166 PDR---SSSTHFGLPRALEEVRKIQPKRTLFIGMMHLMD----HEKVNEELLKLMETEGLD 219 (233)
Q Consensus 166 ~~~---~~~~H~~~~~~~~~~~~~~~~~~~~~h~~~~~~----~~~~~~~~~~~~~~~~~~ 219 (233)
+.. ..+.|..++++.+..+.++.++.+-+|.+.... +-++.+.++++++..|.+
T Consensus 266 YePrWfmK~~HInPeEav~Ihkdv~arns~gIHWGTf~l~~EyyLEP~~KL~el~e~~glk 326 (343)
T KOG3798|consen 266 YEPRWFMKSQHINPEEAVEIHKDVRAKNSIGIHWGTFHLGSEYYLEPRDKLKELMEAEGLK 326 (343)
T ss_pred cCchhhcccccCCHHHHHHHHHHHhhhcceeEeeeeeecccceecCcHHHHHHHHHhcCCC
Confidence 642 467899999999999999999999999776543 235566777777766654
No 46
>COG2248 Predicted hydrolase (metallo-beta-lactamase superfamily) [General function prediction only]
Probab=98.81 E-value=2.8e-08 Score=77.69 Aligned_cols=129 Identities=21% Similarity=0.287 Sum_probs=82.7
Q ss_pred eeeeeCCCceEECCEEEEEE-EecCCCCCceeEEEEc--------cEEEcCCCC-CCCcccccccC--CCcEEEEcCcCC
Q 026783 99 QFNIIDEEPFTVQDLKITPL-PVWHGAGYRSLGFRFG--------NICYISDVS-EIPEETYPFLQ--DCEILIMDALRP 166 (233)
Q Consensus 99 ~~~~~~~~~~~~~~~~i~~~-~~~H~~g~~s~~~~i~--------~i~~~gD~~-~~~~~~~~~~~--~~d~li~e~~~~ 166 (233)
.+..-++.+|++|+..|++- |++|+...+-+||++. +++|+.|+. +..+..++++. +++++++++...
T Consensus 133 ~ie~ADgk~f~fG~t~IefS~pvpHG~eGskLGyVl~v~V~dg~~~i~faSDvqGp~~~~~l~~i~e~~P~v~ii~GPpt 212 (304)
T COG2248 133 EIEYADGKTFEFGGTVIEFSPPVPHGREGSKLGYVLMVAVTDGKSSIVFASDVQGPINDEALEFILEKRPDVLIIGGPPT 212 (304)
T ss_pred eeEecCCceEEeCCEEEEecCCCCCCCcccccceEEEEEEecCCeEEEEcccccCCCccHHHHHHHhcCCCEEEecCCch
Confidence 33444789999999999865 6889985578888874 899999996 55555555553 699999976432
Q ss_pred --CCCCCCCCCHHHHHHHHHHc---CCCeEEEEe-eccCCChhHHHHHHHhhhhcCCCceEEcccCe
Q 026783 167 --DRSSSTHFGLPRALEEVRKI---QPKRTLFIG-MMHLMDHEKVNEELLKLMETEGLDVQLSYDGL 227 (233)
Q Consensus 167 --~~~~~~H~~~~~~~~~~~~~---~~~~~~~~h-~~~~~~~~~~~~~~~~~~~~~~~~v~~a~dg~ 227 (233)
-....+-.+.+.+++-++.+ ..+++++-| .-...+|.+..+++-+.++..|.+|..+-+-+
T Consensus 213 y~lg~r~~~~~~E~~irNl~~ii~~~~~~lViDHHllRD~~y~e~l~~l~~~~~~~GV~v~TaAE~l 279 (304)
T COG2248 213 YLLGYRVGPKSLEKGIRNLERIIEETNATLVIDHHLLRDKNYREFLEELFERAEKAGVEVATAAEFL 279 (304)
T ss_pred hHhhhhcChHHHHHHHHHHHHHHHhCcceEEEeehhhcCCCHHHHHHHHHhhHhhcCceeeeHHHHc
Confidence 11112223334444333332 345666654 44455576777777777777777777665443
No 47
>KOG0814 consensus Glyoxylase [General function prediction only]
Probab=98.63 E-value=1.1e-07 Score=70.53 Aligned_cols=111 Identities=20% Similarity=0.249 Sum_probs=78.5
Q ss_pred ccceeeEEEeeecCccchhhhhhHhcC----------CCCCCEEEeccCchhhcCChhHHHhhhccCccCceEEeChhhH
Q 026783 4 SFSTIALFVGFLPMGTCLIITSCISAR----------IRTIDAVIITHSHADAIGGLDDLRDWTNNVQRHIPIYVAMRDF 73 (233)
Q Consensus 4 ~~~~~~~~~~~~~~~~~~l~~~~~~~~----------~~~i~~v~iTH~H~DH~ggl~~l~~~~~~~~~~~~v~~~~~~~ 73 (233)
+++|+-|.++-...+.++++|+.+..- .-++-+.+-||.|.||+.|...|....+ .++
T Consensus 18 ~SsTytYll~d~~~~~AviIDPV~et~~RD~qlikdLgl~LiYa~NTH~HADHiTGtg~Lkt~~p----g~k-------- 85 (237)
T KOG0814|consen 18 ESSTYTYLLGDHKTGKAVIIDPVLETVSRDAQLIKDLGLDLIYALNTHVHADHITGTGLLKTLLP----GCK-------- 85 (237)
T ss_pred ccceEEEEeeeCCCCceEEecchhhcccchHHHHHhcCceeeeeecceeecccccccchHHHhcc----cHH--------
Confidence 568999999998899999999655421 2267788999999999999988876443 222
Q ss_pred HHHHhhcccccccccccCCCccceeeeeeeCCCceEECCEEEEEEEec-CCCCCceeEEEEc--cEEEcCCC
Q 026783 74 EVMKKTHYYLVDTSGIIPGAAVSELQFNIIDEEPFTVQDLKITPLPVW-HGAGYRSLGFRFG--NICYISDV 142 (233)
Q Consensus 74 ~~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-H~~g~~s~~~~i~--~i~~~gD~ 142 (233)
..+.+.. |. +...+.-+|+.+++|++.++....+ |++ .|+.|+.+ +..|+||+
T Consensus 86 SVis~~S-----------Ga---kAD~~l~~Gd~i~~G~~~le~ratPGHT~--GC~TyV~~d~~~aFTGDa 141 (237)
T KOG0814|consen 86 SVISSAS-----------GA---KADLHLEDGDIIEIGGLKLEVRATPGHTN--GCVTYVEHDLRMAFTGDA 141 (237)
T ss_pred HHhhhcc-----------cc---ccccccCCCCEEEEccEEEEEecCCCCCC--ceEEEEecCcceeeecce
Confidence 1221110 11 1223444789999999988765443 666 59999998 89999997
No 48
>KOG1137 consensus mRNA cleavage and polyadenylation factor II complex, BRR5 (CPSF subunit) [RNA processing and modification]
Probab=98.52 E-value=2.6e-07 Score=79.49 Aligned_cols=173 Identities=16% Similarity=0.125 Sum_probs=99.1
Q ss_pred HhcCCCCCCEEEeccCchhhcCChhHHHhhhccCccCceEEeChhhHHHHHhhcccccc-----cc-cccCCCc-cc-ee
Q 026783 27 ISARIRTIDAVIITHSHADAIGGLDDLRDWTNNVQRHIPIYVAMRDFEVMKKTHYYLVD-----TS-GIIPGAA-VS-EL 98 (233)
Q Consensus 27 ~~~~~~~i~~v~iTH~H~DH~ggl~~l~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~-----~~-~~~~g~~-~~-~~ 98 (233)
...+++.||.++|||.|.||++.+|.+.+.... .-++|.+..|...++........ .. ..+...+ .. ..
T Consensus 59 d~vd~s~id~llIthFhldh~aslp~~~qkTsf---~grvfmth~TkAi~kwllsdyvrvs~~s~~~~Ly~e~dl~~s~d 135 (668)
T KOG1137|consen 59 DEVDLSAIDPLLITHFHLDHAASLPFTLQKTSF---IGRVFMTHPTKAIYKWLLSDYVRVSNRSGDDRLYTEGDLMESMD 135 (668)
T ss_pred hhcccccccHHHHhhhhhhhcccccceeeeccc---cceeEEecchHHHHHhhhhcceEeeeccCccccccchhHHHhhh
Confidence 345788999999999999999999999875421 45677765555544433211110 00 0011000 00 11
Q ss_pred eeeeeC-CCceEECCEEEEEEEecCCCCCceeEEEEc----cEEEcCCCCCCCccccccc----CCCcEEEEcCcCCCCC
Q 026783 99 QFNIID-EEPFTVQDLKITPLPVWHGAGYRSLGFRFG----NICYISDVSEIPEETYPFL----QDCEILIMDALRPDRS 169 (233)
Q Consensus 99 ~~~~~~-~~~~~~~~~~i~~~~~~H~~g~~s~~~~i~----~i~~~gD~~~~~~~~~~~~----~~~d~li~e~~~~~~~ 169 (233)
.+..++ -+..+.+|+++.++.+.|--| ++-|.++ +++|+||.....++-+... .+.|+++.|.++....
T Consensus 136 Kie~idfhe~~ev~gIkf~p~~aGhVlg--acMf~veiagv~lLyTGd~sreeDrhl~aae~P~~~~dvli~estygv~~ 213 (668)
T KOG1137|consen 136 KIETIDFHETVEVNGIKFWPYHAGHVLG--ACMFMVEIAGVRLLYTGDYSREEDRHLIAAEMPPTGPDVLITESTYGVQI 213 (668)
T ss_pred hheeeeeccccccCCeEEEeeccchhhh--heeeeeeeceEEEEeccccchhhcccccchhCCCCCccEEEEEeeeeEEe
Confidence 222233 256778899999998888874 5556665 8999999876544322111 2589999999986533
Q ss_pred CCCCCCHHHH-HHHHHHcC--CCeEEEEeeccCCChhHH
Q 026783 170 SSTHFGLPRA-LEEVRKIQ--PKRTLFIGMMHLMDHEKV 205 (233)
Q Consensus 170 ~~~H~~~~~~-~~~~~~~~--~~~~~~~h~~~~~~~~~~ 205 (233)
+.+|..-+.. ...+-.+- ..++ ++-.+...+.+|.
T Consensus 214 h~~r~~re~rlt~vIh~~v~rGGR~-L~PvFAlgrAqEL 251 (668)
T KOG1137|consen 214 HEPREEREGRLTWVIHSTVPRGGRV-LIPVFALGRAQEL 251 (668)
T ss_pred cCchHHhhhhhhhhHHhhccCCCce-EeeeeecchHHHH
Confidence 3333322222 12333332 2233 4444566655444
No 49
>KOG1135 consensus mRNA cleavage and polyadenylation factor II complex, subunit CFT2 (CPSF subunit) [RNA processing and modification]
Probab=97.50 E-value=0.0054 Score=54.91 Aligned_cols=131 Identities=21% Similarity=0.229 Sum_probs=79.3
Q ss_pred CCCCCCEEEeccCchhhcCChhHHHhhhccCccCceEEeChhhHHH--------HHhhcccccccccccCCCccc--eee
Q 026783 30 RIRTIDAVIITHSHADAIGGLDDLRDWTNNVQRHIPIYVAMRDFEV--------MKKTHYYLVDTSGIIPGAAVS--ELQ 99 (233)
Q Consensus 30 ~~~~i~~v~iTH~H~DH~ggl~~l~~~~~~~~~~~~v~~~~~~~~~--------l~~~~~~~~~~~~~~~g~~~~--~~~ 99 (233)
.+..||+|+|||...=|+|||++...... -.++||++-.+... +..+.. ......+.-.++. -..
T Consensus 48 ~i~~iDaILLShpd~~hlGaLpY~~~k~g---l~~~VYAT~PV~~mG~m~myD~~~S~~~--~~df~l~sldDvd~aFd~ 122 (764)
T KOG1135|consen 48 VIPTIDAILLSHPDILHLGALPYAVGKLG---LNAPVYATLPVIKMGQMFMYDLYRSHGN--VGDFDLFSLDDVDAAFDK 122 (764)
T ss_pred ccccccEEEecCCChHHhccchhhHhhCC---ccceEEEecchhhhhhhhHHHHHhcccc--cccccccchhhhHHHHhh
Confidence 46799999999999999999999875432 14899998655432 111110 0000001000110 011
Q ss_pred eeeeC-CCceEEC----CEEEEEEEecCCCCCceeEEEEc---cEEEcCCCCCCC-----cccccccCCCcEEEEcCcCC
Q 026783 100 FNIID-EEPFTVQ----DLKITPLPVWHGAGYRSLGFRFG---NICYISDVSEIP-----EETYPFLQDCEILIMDALRP 166 (233)
Q Consensus 100 ~~~~~-~~~~~~~----~~~i~~~~~~H~~g~~s~~~~i~---~i~~~gD~~~~~-----~~~~~~~~~~d~li~e~~~~ 166 (233)
+..+. .+.+.+. |++|+++++.|..| .|++-... +++|+-|..--- ...++.+.++.++|.++...
T Consensus 123 I~~LKYsQ~v~L~gk~~Gl~itaynAGhmiG-GsIWkI~k~~E~ivYavd~NHkKe~HLNG~~l~~l~RPsllITda~~~ 201 (764)
T KOG1135|consen 123 IIQLKYSQPVALKGKGSGLTITAYNAGHMIG-GSIWKISKVGEDIVYAVDFNHKKERHLNGCSLSGLNRPSLLITDANHA 201 (764)
T ss_pred eeeeeccceEEeccccCceEEeeecCCCccC-ceEEEEEecCceEEEEEecccchhcccCCccccccCCcceEEeccccc
Confidence 22222 2445553 67999999999997 56543333 999999985432 23455666788999987643
No 50
>PF14597 Lactamase_B_5: Metallo-beta-lactamase superfamily; PDB: 2P97_B.
Probab=97.14 E-value=0.0022 Score=48.34 Aligned_cols=99 Identities=15% Similarity=0.152 Sum_probs=60.3
Q ss_pred cCccchhhhhhHh--------cCCCCCCEEEeccCchhhcCChhHHHhhhccCccCceEEeChhhHHHHHhhcccccccc
Q 026783 16 PMGTCLIITSCIS--------ARIRTIDAVIITHSHADAIGGLDDLRDWTNNVQRHIPIYVAMRDFEVMKKTHYYLVDTS 87 (233)
Q Consensus 16 ~~~~~~l~~~~~~--------~~~~~i~~v~iTH~H~DH~ggl~~l~~~~~~~~~~~~v~~~~~~~~~l~~~~~~~~~~~ 87 (233)
.+++.+++|+.-- .....+++|++|| .||+-....+.+.+ +++||+|....+.+ ++
T Consensus 30 ~p~GnilIDP~~ls~~~~~~l~a~ggv~~IvLTn--~dHvR~A~~ya~~~-----~a~i~~p~~d~~~~----p~----- 93 (199)
T PF14597_consen 30 RPEGNILIDPPPLSAHDWKHLDALGGVAWIVLTN--RDHVRAAEDYAEQT-----GAKIYGPAADAAQF----PL----- 93 (199)
T ss_dssp -TT--EEES-----HHHHHHHHHTT--SEEE-SS--GGG-TTHHHHHHHS-------EEEEEGGGCCC-----SS-----
T ss_pred cCCCCEEecCccccHHHHHHHHhcCCceEEEEeC--ChhHhHHHHHHHHh-----CCeeeccHHHHhhC----CC-----
Confidence 4667788885321 1357899999996 69999999998876 69999998764211 10
Q ss_pred cccCCCccceeeeeeeCCCceEECCEEEEEEEecCCCCCceeEEEEc-cEEEcCCC
Q 026783 88 GIIPGAAVSELQFNIIDEEPFTVQDLKITPLPVWHGAGYRSLGFRFG-NICYISDV 142 (233)
Q Consensus 88 ~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~~~~~H~~g~~s~~~~i~-~i~~~gD~ 142 (233)
..-+.+.+.+--.+|+.+..++-.|++| .+++.++ +++++||.
T Consensus 94 ----------~~D~~l~dge~i~~g~~vi~l~G~ktpG--E~ALlled~vLi~GDl 137 (199)
T PF14597_consen 94 ----------ACDRWLADGEEIVPGLWVIHLPGSKTPG--ELALLLEDRVLITGDL 137 (199)
T ss_dssp ------------SEEE-TT-BSSTTEEEEEE-SSSSTT--EEEEEETTTEEEESSS
T ss_pred ----------CCccccccCCCccCceEEEEcCCCCCCc--eeEEEeccceEEecce
Confidence 0112333333456889999998889994 7777877 99999995
No 51
>COG2015 Alkyl sulfatase and related hydrolases [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=95.42 E-value=0.011 Score=51.18 Aligned_cols=45 Identities=29% Similarity=0.378 Sum_probs=34.5
Q ss_pred CCCCCCEEEeccCchhhcCChhHHHhhhccCccCceEEeChhhHH
Q 026783 30 RIRTIDAVIITHSHADAIGGLDDLRDWTNNVQRHIPIYVAMRDFE 74 (233)
Q Consensus 30 ~~~~i~~v~iTH~H~DH~ggl~~l~~~~~~~~~~~~v~~~~~~~~ 74 (233)
+-+.|.+|+-||.|.||.||+.-+...-.....+++|++|+...+
T Consensus 161 g~rPV~aVIYtHsH~DHfGGVkGiv~eadV~sGkV~iiAP~GFme 205 (655)
T COG2015 161 GQRPVVAVIYTHSHSDHFGGVKGIVSEADVKSGKVQIIAPAGFME 205 (655)
T ss_pred CCCCeEEEEeecccccccCCeeeccCHHHcccCceeEecchhHHH
Confidence 567899999999999999999877654333334799999975433
No 52
>PF07521 RMMBL: RNA-metabolising metallo-beta-lactamase; InterPro: IPR011108 The metallo-beta-lactamase fold contains five sequence motifs. The first four motifs are found in IPR001279 from INTERPRO and are common to all metallo-beta-lactamases. The fifth motif appears to be specific to function. This entry represents the fifth motif from metallo-beta-lactamases involved in RNA metabolism [].; PDB: 3ZQ4_D 2I7T_A 2I7V_A 2YCB_B 3BK1_A 3T3N_A 3BK2_A 3T3O_A 3AF5_A 3AF6_A ....
Probab=92.81 E-value=0.17 Score=28.80 Aligned_cols=29 Identities=17% Similarity=0.274 Sum_probs=25.1
Q ss_pred CCCCCCHHHHHHHHHHcCCCeEEEEeecc
Q 026783 170 SSTHFGLPRALEEVRKIQPKRTLFIGMMH 198 (233)
Q Consensus 170 ~~~H~~~~~~~~~~~~~~~~~~~~~h~~~ 198 (233)
-.+|.+.++..++++.++|++++++|+..
T Consensus 14 fSgHad~~~L~~~i~~~~p~~vilVHGe~ 42 (43)
T PF07521_consen 14 FSGHADREELLEFIEQLNPRKVILVHGEP 42 (43)
T ss_dssp CSSS-BHHHHHHHHHHHCSSEEEEESSEH
T ss_pred ecCCCCHHHHHHHHHhcCCCEEEEecCCC
Confidence 46899999999999999999999999753
No 53
>PF13691 Lactamase_B_4: tRNase Z endonuclease
Probab=88.94 E-value=0.38 Score=29.94 Aligned_cols=23 Identities=17% Similarity=0.420 Sum_probs=20.2
Q ss_pred HhcCCCCCCEEEeccCc-hhhcCC
Q 026783 27 ISARIRTIDAVIITHSH-ADAIGG 49 (233)
Q Consensus 27 ~~~~~~~i~~v~iTH~H-~DH~gg 49 (233)
.+..+.+++.||+|+.. ||++||
T Consensus 40 ~~ikl~kl~~IFlT~~~~w~~~GG 63 (63)
T PF13691_consen 40 HKIKLSKLNDIFLTGLSSWENIGG 63 (63)
T ss_pred cCCCccccceEEECCCCcccccCC
Confidence 34568899999999999 999987
No 54
>TIGR00649 MG423 conserved hypothetical protein. Contains an ATP-binding domain at the N-terminal end of the protein. Possibly part of a superfamily of beta-lactmases
Probab=86.58 E-value=1.8 Score=37.83 Aligned_cols=59 Identities=20% Similarity=0.135 Sum_probs=44.0
Q ss_pred CCCCCCCHHHHHHHHHHcCCCeEEEEeeccCCChhHHHHHHHhhhhcCCC---ceEEcccCeEEecc
Q 026783 169 SSSTHFGLPRALEEVRKIQPKRTLFIGMMHLMDHEKVNEELLKLMETEGL---DVQLSYDGLRVPVM 232 (233)
Q Consensus 169 ~~~~H~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~~---~v~~a~dg~~i~l~ 232 (233)
.-++|.+.++...+++.++|+.++++|+...... ...+++++.|. ++.+...|.++.+.
T Consensus 357 h~SgHa~~~dl~~~i~~~~Pk~~ipvHge~~~~~-----~~~~~a~~~g~~~~~~~~~~nG~~~~~~ 418 (422)
T TIGR00649 357 HVSGHASQEDHKLLLRLLKPKYIIPVHGEYRMLI-----NHTKLAEEEGYPGENIFILRNGDVLEIN 418 (422)
T ss_pred EecCCCCHHHHHHHHHHhCCCEEEecCCcHHHHH-----HHHHHHHHcCCCcccEEEecCCcEEEec
Confidence 3579999999999999999999999987755322 12333344443 78999999998874
No 55
>TIGR03675 arCOG00543 arCOG00543 universal archaeal KH-domain/beta-lactamase-domain protein. This family of proteins is universal in the archaea and consistsof an N-terminal type-1 KH-domain (pfam00013) a central beta-lactamase-domain (pfam00753) with a C-terminal motif associated with RNA metabolism (pfam07521). KH-domains are associated with RNA-binding, so taken together, this protein is a likely metal-dependent RNAase. This family was defined in as arCOG01782.
Probab=82.50 E-value=3.6 Score=37.90 Aligned_cols=58 Identities=12% Similarity=0.051 Sum_probs=43.1
Q ss_pred CCCCCCHHHHHHHHHHcCC--CeEEEEeeccCCChhHHHHHHHhhhhcCCCceEEcccCeEEec
Q 026783 170 SSTHFGLPRALEEVRKIQP--KRTLFIGMMHLMDHEKVNEELLKLMETEGLDVQLSYDGLRVPV 231 (233)
Q Consensus 170 ~~~H~~~~~~~~~~~~~~~--~~~~~~h~~~~~~~~~~~~~~~~~~~~~~~~v~~a~dg~~i~l 231 (233)
-.+|.+..+.+++++.++| ++++++|+..... ......+.+..+.++.++..|+++.|
T Consensus 570 fSaHaD~~~L~~~v~~~~p~p~~v~lvHGe~~~~----~~la~~l~~~~~~~~~~P~~~e~~~~ 629 (630)
T TIGR03675 570 FSGHSDRRQLMNYVRRMQPKPEKILLNHGEPSKI----LDLASSIYKKFNIETYAPKNLETIRL 629 (630)
T ss_pred ccccCCHHHHHHHHHhcCCCCCEEEEEcCCHHHH----HHHHHHHHHHhCCcEEeCCCCCEEEe
Confidence 4799999999999999865 8999998776532 22223333345668899999999886
No 56
>KOG1136 consensus Predicted cleavage and polyadenylation specificity factor (CPSF subunit) [RNA processing and modification]
Probab=66.45 E-value=21 Score=30.12 Aligned_cols=60 Identities=12% Similarity=0.128 Sum_probs=44.5
Q ss_pred CCCCCCCHHHHHHHHHHcCCCeEEEEeeccCCChhHHHHHHHhhhhcCCCceEEcccCeEEecc
Q 026783 169 SSSTHFGLPRALEEVRKIQPKRTLFIGMMHLMDHEKVNEELLKLMETEGLDVQLSYDGLRVPVM 232 (233)
Q Consensus 169 ~~~~H~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~~~v~~a~dg~~i~l~ 232 (233)
.-..|.+.....+.++.+.|+++.++|+....-. -.. .++.++++....++-.|+++.+.
T Consensus 387 aFSaHaDAkGIm~li~~csPknVmlVHGE~~kM~-~Lk---~ki~~e~~ip~~mPaNGetv~i~ 446 (501)
T KOG1136|consen 387 AFSAHADAKGIMQLIKQCSPKNVMLVHGEKSKMK-FLK---EKIESEFDIPTFMPANGETVVIS 446 (501)
T ss_pred eeccccCchhHHHHHHhcCcceEEEEeccchhhH-HHH---HhhHhhcCCceeeCCCCCEEEec
Confidence 3578999999999999999999999998765321 111 23334567788899999888763
No 57
>KOG4736 consensus Uncharacterized conserved protein [Function unknown]
Probab=64.92 E-value=2.6 Score=34.54 Aligned_cols=39 Identities=23% Similarity=0.443 Sum_probs=28.1
Q ss_pred cCccchhhhhhHh------cCCCCCCEEEeccCchhhcCChhHHH
Q 026783 16 PMGTCLIITSCIS------ARIRTIDAVIITHSHADAIGGLDDLR 54 (233)
Q Consensus 16 ~~~~~~l~~~~~~------~~~~~i~~v~iTH~H~DH~ggl~~l~ 54 (233)
+++..++++..++ ...++|+.+++||.|.+|.+++..+.
T Consensus 102 d~~~v~v~~~gls~lak~~vt~d~i~~vv~t~~~~~hlgn~~~f~ 146 (302)
T KOG4736|consen 102 DGGDVVVVDTGLSVLAKEGVTLDQIDSVVITHKSPGHLGNNNLFP 146 (302)
T ss_pred cCCceEEEecCCchhhhcCcChhhcceeEEeccCccccccccccc
Confidence 4444445444333 45789999999999999999876654
No 58
>KOG1138 consensus Predicted cleavage and polyadenylation specificity factor (CPSF subunit) [RNA processing and modification]
Probab=57.44 E-value=36 Score=30.43 Aligned_cols=54 Identities=17% Similarity=0.135 Sum_probs=37.2
Q ss_pred cCccchhhhhhHhcCCCCCCEEEeccCchhhcCChhHHHhhhccCccCceEEeChhhHH
Q 026783 16 PMGTCLIITSCISARIRTIDAVIITHSHADAIGGLDDLRDWTNNVQRHIPIYVAMRDFE 74 (233)
Q Consensus 16 ~~~~~~l~~~~~~~~~~~i~~v~iTH~H~DH~ggl~~l~~~~~~~~~~~~v~~~~~~~~ 74 (233)
+..+...++...-.+.+.||.|+||..|. ..|+|.+-+... =..+||+++.+++
T Consensus 79 esppe~~l~~t~lld~stiDvILISNy~~--mlgLPfiTentG---F~gkiY~TE~t~q 132 (653)
T KOG1138|consen 79 ESPPEFTLPATHLLDASTIDVILISNYMG--MLGLPFITENTG---FFGKIYATEPTAQ 132 (653)
T ss_pred cCCchhccchhhhhcccceeEEEEcchhh--hcccceeecCCC---ceeEEEEechHHH
Confidence 44444555555556778999999999884 568888765321 1479999987655
No 59
>COG0595 mRNA degradation ribonucleases J1/J2 (metallo-beta-lactamase superfamily) [Translation, ribosomal structure and biogenesis; Replication, recombination and repair]
Probab=55.55 E-value=25 Score=32.01 Aligned_cols=62 Identities=11% Similarity=-0.015 Sum_probs=43.5
Q ss_pred CCCCCCCHHHHHHHHHHcCCCeEEEEeeccCCChhHHHHHHHhhhhcCCCceEEcccCeEEecc
Q 026783 169 SSSTHFGLPRALEEVRKIQPKRTLFIGMMHLMDHEKVNEELLKLMETEGLDVQLSYDGLRVPVM 232 (233)
Q Consensus 169 ~~~~H~~~~~~~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~~~v~~a~dg~~i~l~ 232 (233)
...+|.+.++...+++.++|+.++++|......... ..+++-.-....++...+.|..+.+.
T Consensus 367 hvSGHas~eel~~mi~~l~Pky~iPvHGeyr~~~~~--a~la~~~G~~~~~i~i~~nG~v~~l~ 428 (555)
T COG0595 367 HVSGHASREELKLMINLLRPKYLIPVHGEYRMLVAH--AKLAEEEGIPQENIFILRNGDVLELE 428 (555)
T ss_pred EecCCCChHHHHHHHHhhCCceecccCCCcHHHHHH--HHHHHhcCCCcccEEEecCceEEEec
Confidence 458999999999999999999999998776643211 11111111122378999999988875
No 60
>cd07186 CofD_like LPPG:FO 2-phospho-L-lactate transferase; important in F420 biosynthesis. CofD is a 2-phospho-L-lactate transferase that catalyzes the last step in the biosynthesis of coenzyme F(420)-0 (F(420) without polyglutamate) by transferring the lactyl phosphate moiety of lactyl(2)diphospho-(5')guanosine (LPPG) to 7,8-didemethyl-8-hydroxy-5-deazariboflavin ribitol (F0). F420 is a hydride carrier, important for energy metabolism of methanogenic archaea, as well as for the biosynthesis of other natural products, like tetracycline in Streptomyces. F420 and some of its precursors are also utilized as cofactors for enzymes, like DNA photolyase in Mycobacterium tuberculosis.
Probab=53.08 E-value=16 Score=30.37 Aligned_cols=62 Identities=16% Similarity=0.319 Sum_probs=48.4
Q ss_pred EccEEEcC--CCCCCCcccccccCCCcEEEEcCcCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEe
Q 026783 133 FGNICYIS--DVSEIPEETYPFLQDCEILIMDALRPDRSSSTHFGLPRALEEVRKIQPKRTLFIG 195 (233)
Q Consensus 133 i~~i~~~g--D~~~~~~~~~~~~~~~d~li~e~~~~~~~~~~H~~~~~~~~~~~~~~~~~~~~~h 195 (233)
+.++.|.+ +..+.+ +.++.+.++|++++....+..|.-.+..+++..+.+++.+.++++++-
T Consensus 160 i~~V~~~~~e~a~~~p-~vl~AI~~AD~IVlGPgsp~TSI~P~LlVpgI~eAL~~s~A~vV~Vsp 223 (303)
T cd07186 160 VRDVRFVGAEEARPAP-EVLEAIEDADLVIIGPSNPVTSIGPILALPGIREALRDKKAPVVAVSP 223 (303)
T ss_pred eEEEEeCCcccCCCCH-HHHHHHHhCCEEEECCCccHHHhhhhccchhHHHHHHhCCCCEEEEcC
Confidence 34778877 455554 477888999999998776666778888889999999998888888754
No 61
>KOG1137 consensus mRNA cleavage and polyadenylation factor II complex, BRR5 (CPSF subunit) [RNA processing and modification]
Probab=52.58 E-value=36 Score=30.77 Aligned_cols=51 Identities=22% Similarity=0.193 Sum_probs=36.8
Q ss_pred CCCEEEeccCchhhcCChhHHHhhhccCc-c-CceEEeChhhHHHHHhhcccc
Q 026783 33 TIDAVIITHSHADAIGGLDDLRDWTNNVQ-R-HIPIYVAMRDFEVMKKTHYYL 83 (233)
Q Consensus 33 ~i~~v~iTH~H~DH~ggl~~l~~~~~~~~-~-~~~v~~~~~~~~~l~~~~~~~ 83 (233)
.+-++.++|.|.||.+-++.+....-.++ + =++||+-....+.+.-...||
T Consensus 207 stygv~~h~~r~~re~rlt~vIh~~v~rGGR~L~PvFAlgrAqELllildeyw 259 (668)
T KOG1137|consen 207 STYGVQIHEPREEREGRLTWVIHSTVPRGGRVLIPVFALGRAQELLLILDEYW 259 (668)
T ss_pred eeeeEEecCchHHhhhhhhhhHHhhccCCCceEeeeeecchHHHHHHHHHHHh
Confidence 46678899999999999998876443221 1 278998888888776655554
No 62
>PF08915 tRNA-Thr_ED: Archaea-specific editing domain of threonyl-tRNA synthetase; InterPro: IPR015011 Archaea-specific editing domain of threonyl-tRNA synthetase, with marked structural similarity to D-amino acids deacylases found in eubacteria and eukaryotes. This domain can bind D-amino acids, and ensures high fidelity during translation. It is especially responsible for removing incorrectly attached serine from tRNA-Thr. The domain forms a fold that can be defined as two layers of beta-sheets (a three-stranded sheet and a five-stranded sheet), with two alpha-helices located adjacent to the five-stranded sheet []. ; GO: 0004829 threonine-tRNA ligase activity, 0005524 ATP binding, 0008270 zinc ion binding, 0005737 cytoplasm; PDB: 3PD4_B 3PD3_A 2HL0_A 2HL1_A 2HKZ_A 3PD5_B 2HL2_A 3PD2_B 1Y2Q_A.
Probab=48.24 E-value=73 Score=23.22 Aligned_cols=26 Identities=19% Similarity=0.239 Sum_probs=18.8
Q ss_pred HHHHHHHHHcCCCeEEEEeeccCCCh
Q 026783 177 PRALEEVRKIQPKRTLFIGMMHLMDH 202 (233)
Q Consensus 177 ~~~~~~~~~~~~~~~~~~h~~~~~~~ 202 (233)
++....+++++++++++.-+.|++..
T Consensus 61 ~eI~~~a~kv~~~~ivlyPyAHLSs~ 86 (138)
T PF08915_consen 61 EEIKWVAKKVKAKRIVLYPYAHLSSS 86 (138)
T ss_dssp HHHHHHHHHTT-SEEEEEE-GGGSSS
T ss_pred HHHHHHHHhcCCCEEEEeCcccccCC
Confidence 45566778889999999889998763
No 63
>KOG3592 consensus Microtubule-associated proteins [Cytoskeleton]
Probab=45.75 E-value=10 Score=35.17 Aligned_cols=26 Identities=35% Similarity=0.644 Sum_probs=23.3
Q ss_pred CCCCCEEEeccCchhhcCChhHHHhh
Q 026783 31 IRTIDAVIITHSHADAIGGLDDLRDW 56 (233)
Q Consensus 31 ~~~i~~v~iTH~H~DH~ggl~~l~~~ 56 (233)
+++||+|++||.-.|-.+|+..|.++
T Consensus 79 ldrVdaVLLthpg~dNLpginsllqr 104 (934)
T KOG3592|consen 79 LDRVDAVLLTHPGADNLPGINSLLQR 104 (934)
T ss_pred HhhhhhhhhcccccCccccchHHHHH
Confidence 57899999999999999999988753
No 64
>TIGR01826 CofD_related conserved hypothetical protein, cofD-related. This model represents a subfamily of conserved hypothetical proteins that forms a sister group to the family of CofD, (TIGR01819), LPPG:Fo 2-phospho-L-lactate transferase, an enzyme of cytochrome F420 biosynthesis. Both this family and TIGR01819 are within the scope of the pfam model pfam01933.
Probab=41.55 E-value=35 Score=28.54 Aligned_cols=62 Identities=13% Similarity=0.234 Sum_probs=44.7
Q ss_pred EccEEEcC-CCCCCCcccccccCCCcEEEEcCcCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEe
Q 026783 133 FGNICYIS-DVSEIPEETYPFLQDCEILIMDALRPDRSSSTHFGLPRALEEVRKIQPKRTLFIG 195 (233)
Q Consensus 133 i~~i~~~g-D~~~~~~~~~~~~~~~d~li~e~~~~~~~~~~H~~~~~~~~~~~~~~~~~~~~~h 195 (233)
+.++.|.+ +.... ++.++.+++||+++......-.|...+.-+++..+.+++.+++++++.-
T Consensus 150 I~~v~l~~~~~~a~-~~al~AI~~ADlIvlgPGSlyTSIiPnLlv~gI~eAI~~s~a~kV~v~N 212 (310)
T TIGR01826 150 IDRVRLEPEDVPAL-REAVEAIREADLIILGPGSLYTSIIPNLLVPEIAEALRESKAPKVYVCN 212 (310)
T ss_pred ceEEEEeCCCCCCC-HHHHHHHHhCCEEEECCCcCHHHhchhcCchhHHHHHHhCCCCEEEEeC
Confidence 55888888 44444 4577888899999988765544666667777887888877777777653
No 65
>PF07522 DRMBL: DNA repair metallo-beta-lactamase; InterPro: IPR011084 The metallo-beta-lactamase fold contains five sequence motifs. The first four motifs are found in IPR001279 from INTERPRO and are common to all metallo-beta-lactamases. The fifth motif appears to be specific to function. This entry represents the fifth motif from metallo-beta-lactamases involved in DNA repair [].
Probab=41.16 E-value=32 Score=23.74 Aligned_cols=25 Identities=24% Similarity=0.248 Sum_probs=22.3
Q ss_pred CCCCCCHHHHHHHHHHcCCCeEEEE
Q 026783 170 SSTHFGLPRALEEVRKIQPKRTLFI 194 (233)
Q Consensus 170 ~~~H~~~~~~~~~~~~~~~~~~~~~ 194 (233)
-.-|++..|..++++.++|++++.+
T Consensus 81 YSeHSSf~EL~~Fv~~l~P~~IiPt 105 (110)
T PF07522_consen 81 YSEHSSFSELKEFVSFLKPKKIIPT 105 (110)
T ss_pred cccCCCHHHHHHHHHhcCCcEEEcc
Confidence 3579999999999999999999875
No 66
>cd07187 YvcK_like family of mostly uncharacterized proteins similar to B.subtilis YvcK. One member of this protein family, YvcK from Bacillus subtilis, has been proposed to play a role in carbon metabolism, since its function is essential for growth on intermediates of the Krebs cycle and the pentose phosphate pathway. In general, this family of mostly uncharacterized proteins is related to the CofD-like protein family. CofD has been characterized as a 2-phospho-L-lactate transferase involved in F420 biosynthesis. This family appears to have the same conserved phosphate binding site as the other family in this hierarchy, but a different substrate binding site.
Probab=37.73 E-value=41 Score=28.13 Aligned_cols=63 Identities=6% Similarity=0.072 Sum_probs=45.7
Q ss_pred EEccEEEcCC-CCCCCcccccccCCCcEEEEcCcCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEe
Q 026783 132 RFGNICYISD-VSEIPEETYPFLQDCEILIMDALRPDRSSSTHFGLPRALEEVRKIQPKRTLFIG 195 (233)
Q Consensus 132 ~i~~i~~~gD-~~~~~~~~~~~~~~~d~li~e~~~~~~~~~~H~~~~~~~~~~~~~~~~~~~~~h 195 (233)
.+.++.|.+- .... ++.++.+++||+++......-.+...+..+++..+.+++.+++++++.-
T Consensus 152 ~I~~v~l~~~~~~~~-~~a~~AI~~AD~Iv~gPGSlyTSI~P~Llv~gI~eAi~~s~a~kV~v~N 215 (308)
T cd07187 152 PIKRVFLEPPDPKAN-PEALEAIEEADLIVYGPGSLYTSILPNLLVKGIAEAIRASKAPKVYICN 215 (308)
T ss_pred CceEEEEECCCCCCC-HHHHHHHHhCCEEEECCCccHHHhhhhcCchhHHHHHHhCCCCEEEEec
Confidence 3447777764 3343 4577888999999988765555667777788888888888888887753
No 67
>COG4892 Predicted heme/steroid binding protein [General function prediction only]
Probab=37.34 E-value=51 Score=20.88 Aligned_cols=26 Identities=27% Similarity=0.257 Sum_probs=18.5
Q ss_pred HHHHHhhhhcCCCceEEcccCeEEecc
Q 026783 206 NEELLKLMETEGLDVQLSYDGLRVPVM 232 (233)
Q Consensus 206 ~~~~~~~~~~~~~~v~~a~dg~~i~l~ 232 (233)
.|++.+..-+.| ++++|++|.++++-
T Consensus 6 LEELs~ynG~nG-paYiA~~G~VYDvS 31 (81)
T COG4892 6 LEELSKYNGENG-PAYIAVNGTVYDVS 31 (81)
T ss_pred HHHHHhhcCCCC-CeEEEECCEEEeec
Confidence 445555544444 99999999998864
No 68
>COG1782 Predicted metal-dependent RNase, consists of a metallo-beta-lactamase domain and an RNA-binding KH domain [General function prediction only]
Probab=35.59 E-value=99 Score=27.88 Aligned_cols=59 Identities=10% Similarity=0.043 Sum_probs=38.0
Q ss_pred CCCCCCCHHHHHHHHHHcC--CCeEEEEeeccCCChhHHHHHHHhhhhcCCCceEEcccCeEEec
Q 026783 169 SSSTHFGLPRALEEVRKIQ--PKRTLFIGMMHLMDHEKVNEELLKLMETEGLDVQLSYDGLRVPV 231 (233)
Q Consensus 169 ~~~~H~~~~~~~~~~~~~~--~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~~~v~~a~dg~~i~l 231 (233)
.-.+|++-.+..++++.++ |+++++.|+.... ..+....+.+.+....+++...+++.+
T Consensus 576 GFSGHsdrrqL~~yvr~~~PkP~ki~~~HGe~sk----~~~lA~si~~~~~i~t~ap~nLetiR~ 636 (637)
T COG1782 576 GFSGHSDRRQLMKYVRRMNPKPEKILLNHGEPSK----CLDLASSIRRKFKIETYAPKNLETIRL 636 (637)
T ss_pred CcCCCccHHHHHHHHHhcCCCCceeEeecCChHH----HHHHHHHHHhhcceeeeccccccceec
Confidence 4579999999999999995 5688888765542 222222222334446666666666554
No 69
>COG1236 YSH1 Predicted exonuclease of the beta-lactamase fold involved in RNA processing [Translation, ribosomal structure and biogenesis]
Probab=30.44 E-value=1e+02 Score=27.03 Aligned_cols=31 Identities=19% Similarity=0.223 Sum_probs=27.7
Q ss_pred CCCCCHHHHHHHHHHcCCCeEEEEeeccCCC
Q 026783 171 STHFGLPRALEEVRKIQPKRTLFIGMMHLMD 201 (233)
Q Consensus 171 ~~H~~~~~~~~~~~~~~~~~~~~~h~~~~~~ 201 (233)
..|.+..+..++++...+++++++|......
T Consensus 369 s~Had~~~l~~~i~~~~~~~v~~~Hg~~~~~ 399 (427)
T COG1236 369 SAHADGDELLEFIKDISPPKVVLVHGEPEYG 399 (427)
T ss_pred ccccCcHHHHHHHhcCCCceEEEEeCCchhh
Confidence 4699999999999999999999999888764
No 70
>COG2875 CobM Precorrin-4 methylase [Coenzyme metabolism]
Probab=30.40 E-value=2.6e+02 Score=22.56 Aligned_cols=43 Identities=12% Similarity=0.077 Sum_probs=29.4
Q ss_pred CCCCCCHHHHHHHHHHc--CCCeEEEEeeccCCChhHHHHHHHhh
Q 026783 170 SSTHFGLPRALEEVRKI--QPKRTLFIGMMHLMDHEKVNEELLKL 212 (233)
Q Consensus 170 ~~~H~~~~~~~~~~~~~--~~~~~~~~h~~~~~~~~~~~~~~~~~ 212 (233)
...++++++..+.+.+. ..+.++-.|.+...-|-...|++.++
T Consensus 55 nSa~~tLeeIi~~m~~a~~~Gk~VvRLhSGDpsiYgA~~EQm~~L 99 (254)
T COG2875 55 NSASLTLEEIIDLMVDAVREGKDVVRLHSGDPSIYGALAEQMREL 99 (254)
T ss_pred ecCcCCHHHHHHHHHHHHHcCCeEEEeecCChhHHHHHHHHHHHH
Confidence 46778899988776643 55677778887777665555555544
No 71
>cd07044 CofD_YvcK Family of CofD-like proteins and proteins related to YvcK. CofD is a 2-phospho-L-lactate transferase that catalyzes the last step in the biosynthesis of coenzyme F(420)-0 (F(420) without polyglutamate) by transferring the lactyl phosphate moiety of lactyl(2)diphospho-(5')guanosine (LPPG) to 7,8-didemethyl-8-hydroxy-5-deazariboflavin ribitol (F0). F420 is a hydride carrier, important for energy metabolism of methanogenic archaea, as well as for the biosynthesis of other natural products, like tetracycline in Streptomyces. F420 and some of its precursors are also utilized as cofactors for enzymes, like DNA photolyase in Mycobacterium tuberculosis. YvcK from Bacillus subtilis is a member of a family of mostly uncharacterized proteins and has been proposed to play a role in carbon metabolism, since its function is essential for growth on intermediates of the Krebs cycle and pentose phosphate pathway. Both families appear to have a conserved phosphate binding site, but ha
Probab=26.83 E-value=73 Score=26.69 Aligned_cols=63 Identities=11% Similarity=0.164 Sum_probs=44.8
Q ss_pred EccEEEcCC--CCCCCcccccccCCCcEEEEcCcCCCCCCCCCCCHHHHHHHHHHcCCCeEEEEee
Q 026783 133 FGNICYISD--VSEIPEETYPFLQDCEILIMDALRPDRSSSTHFGLPRALEEVRKIQPKRTLFIGM 196 (233)
Q Consensus 133 i~~i~~~gD--~~~~~~~~~~~~~~~d~li~e~~~~~~~~~~H~~~~~~~~~~~~~~~~~~~~~h~ 196 (233)
+.++.+.+- ..+. +..++.+.++|+++.....+-.|...+..++...+.+++.+++++++.-+
T Consensus 151 I~~v~l~~~~~~~~~-~~~l~AI~~ADlIvlgPGSlyTSI~P~Llv~gi~eAi~~s~a~kV~V~ni 215 (309)
T cd07044 151 IDRVFLTPVDEASPS-REVLEAIEKADNIVIGPGSLYTSILPNISVPGIREALKKTXAKKVYVSNI 215 (309)
T ss_pred ceEEEEcCCCCCCCC-HHHHHHHHhCCEEEECCCcCHHHhhhhcCcHhHHHHHHhcCCCeEEECCC
Confidence 347778773 3444 34778888999999987655456667777788888888877777776543
No 72
>COG0391 Uncharacterized conserved protein [Function unknown]
Probab=26.30 E-value=92 Score=26.27 Aligned_cols=62 Identities=10% Similarity=0.061 Sum_probs=43.5
Q ss_pred EccEEEcCCCCCC-CcccccccCCCcEEEEcCcCCCCCCCCCCCHHHHHHHHHHcCCCeEEEE
Q 026783 133 FGNICYISDVSEI-PEETYPFLQDCEILIMDALRPDRSSSTHFGLPRALEEVRKIQPKRTLFI 194 (233)
Q Consensus 133 i~~i~~~gD~~~~-~~~~~~~~~~~d~li~e~~~~~~~~~~H~~~~~~~~~~~~~~~~~~~~~ 194 (233)
+.++.|.|.-.+. ..+.++.+++||++++....+..|.-.+..+++..+.+++...++++..
T Consensus 166 v~~V~~~~~~~~~a~~eaveAI~~AD~IviGPgSl~TSIlP~Lllp~I~eaLr~~~ap~i~v~ 228 (323)
T COG0391 166 VHRVRLEGPEKPSAAPEAVEAIKEADLIVIGPGSLFTSILPILLLPGIAEALRETVAPIVYVC 228 (323)
T ss_pred ceEEEEecCCCCCCCHHHHHHHHhCCEEEEcCCccHhhhchhhchhHHHHHHHhCCCCEEEec
Confidence 5688888643322 2357788899998888776555566667777888888888666666653
No 73
>PF06415 iPGM_N: BPG-independent PGAM N-terminus (iPGM_N); InterPro: IPR011258 This family represents the N-terminal region of the 2,3-bisphosphoglycerate-independent phosphoglycerate mutase (or phosphoglyceromutase or BPG-independent PGAM) protein (5.4.2.1 from EC). The family is found in conjunction with Metalloenzyme (located in the C-terminal region of the protein). ; GO: 0004619 phosphoglycerate mutase activity, 0030145 manganese ion binding, 0006007 glucose catabolic process, 0005737 cytoplasm; PDB: 1EQJ_A 1EJJ_A 1O99_A 1O98_A 3IGZ_B 3IGY_B 3NVL_A 2IFY_A.
Probab=24.56 E-value=28 Score=27.59 Aligned_cols=16 Identities=38% Similarity=0.345 Sum_probs=12.1
Q ss_pred cCchhhcCChhHHHhh
Q 026783 41 HSHADAIGGLDDLRDW 56 (233)
Q Consensus 41 H~H~DH~ggl~~l~~~ 56 (233)
|.|.||+.++..+.+.
T Consensus 42 HSh~~Hl~al~~~a~~ 57 (223)
T PF06415_consen 42 HSHIDHLFALIKLAKK 57 (223)
T ss_dssp S--HHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHH
Confidence 9999999998888764
Done!