BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 026784
(233 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4D9S|A Chain A, Crystal Structure Of Arabidopsis Thaliana Uvr8 (Uv
Resistance Locus 8)
pdb|4D9S|B Chain B, Crystal Structure Of Arabidopsis Thaliana Uvr8 (Uv
Resistance Locus 8)
Length = 406
Score = 82.0 bits (201), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 57/159 (35%), Positives = 77/159 (48%), Gaps = 13/159 (8%)
Query: 3 LDIYTWGLGSVGQLGHCSLQSGDKELLPRRVVALDGIFIKDVACGGVHTCALTSKGALYA 62
+++Y+WG G G+LGH + S D P + AL GI IK +ACG H A+T +G + +
Sbjct: 88 MEVYSWGWGDFGRLGHGN--SSDL-FTPLPIKALHGIRIKQIACGDSHCLAVTMEGEVQS 144
Query: 63 WGGCQAGQLGLGPQTRSFSFIPNESDTYFRNIPILVVPNGVQLVACGHSHTLVYMRDGKI 122
WG Q GQLGLG S +P + F I I ++VA G HT DG +
Sbjct: 145 WGRNQNGQLGLGDTED--SLVPQKIQA-FEGIRI-------KMVAAGAEHTAAVTEDGDL 194
Query: 123 HGWGYNSYGQAANEKSTYAWYPSPVDWCVGEVRKLAAGG 161
+GWG+ YG T P V GE + A G
Sbjct: 195 YGWGWGRYGNLGLGDRTDRLVPERVTSTGGEKMSMVACG 233
Score = 75.5 bits (184), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 48/135 (35%), Positives = 69/135 (51%), Gaps = 19/135 (14%)
Query: 1 MHLDIYTWGLGSVGQLGHCSLQSGDKELLPRRVVALDGIFIKDVACGGVHTCALTSKGAL 60
M ++ +WG GQLG L + L+P+++ A +GI IK VA G HT A+T G L
Sbjct: 138 MEGEVQSWGRNQNGQLG---LGDTEDSLVPQKIQAFEGIRIKMVAAGAEHTAAVTEDGDL 194
Query: 61 YAWGGCQAGQLGLGPQTRSFSFIPNESDTYFRNIPILVVPNG---VQLVACGHSHTLVYM 117
Y WG + G LGLG +T R +P V G + +VACG HT+
Sbjct: 195 YGWGWGRYGNLGLGDRTD-------------RLVPERVTSTGGEKMSMVACGWRHTISVS 241
Query: 118 RDGKIHGWGYNSYGQ 132
G ++ +G++ YGQ
Sbjct: 242 YSGALYTYGWSKYGQ 256
Score = 73.6 bits (179), Expect = 8e-14, Method: Compositional matrix adjust.
Identities = 55/171 (32%), Positives = 82/171 (47%), Gaps = 19/171 (11%)
Query: 7 TWGLGSVGQLGHCSLQSGDKE--LLPRRVVALDGIFIKDVACGGVHTCALTSKGA-LYAW 63
+WG G GQLGH GD E P ++ ALDG I V CG HT A + G +Y+W
Sbjct: 39 SWGRGEDGQLGH-----GDAEDRPSPTQLSALDGHQIVSVTCGADHTVAYSQSGMEVYSW 93
Query: 64 GGCQAGQLGLGPQTRSFSFIPNESDTYFRNIPILVVPNGVQLVACGHSHTLVYMRDGKIH 123
G G+LG G + F+ +P ++ R ++ +ACG SH L +G++
Sbjct: 94 GWGDFGRLGHGNSSDLFTPLPIKALHGIR----------IKQIACGDSHCLAVTMEGEVQ 143
Query: 124 GWGYNSYGQAANEKSTYAWYPSPVDWCVG-EVRKLAAGGGHSAVLTDACSL 173
WG N GQ + + P + G ++ +AAG H+A +T+ L
Sbjct: 144 SWGRNQNGQLGLGDTEDSLVPQKIQAFEGIRIKMVAAGAEHTAAVTEDGDL 194
Score = 67.8 bits (164), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 47/147 (31%), Positives = 69/147 (46%), Gaps = 19/147 (12%)
Query: 5 IYTWGLGSVGQLGHCSLQSGDKELLPRRVVALDGIFIKDVACGGVHTCALTSKGALYAWG 64
+YT+G GQLGH L+ L+P ++ AL FI ++ G HT ALTS G LY WG
Sbjct: 246 LYTYGWSKYGQLGHGDLE---DHLIPHKLEALSNSFISQISGGWRHTMALTSDGKLYGWG 302
Query: 65 GCQAGQLGLGPQTRSFSFIPNESDTYFRNIPILV-VPNGVQL--VACGHSHTLVYMRDGK 121
+ GQ+G+G S P+ V P+ ++ V+CG HTL
Sbjct: 303 WNKFGQVGVGNNLDQCS-------------PVQVRFPDDQKVVQVSCGWRHTLAVTERNN 349
Query: 122 IHGWGYNSYGQAANEKSTYAWYPSPVD 148
+ WG + GQ +S +P ++
Sbjct: 350 VFAWGRGTNGQLGIGESVDRNFPKIIE 376
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/144 (27%), Positives = 67/144 (46%), Gaps = 26/144 (18%)
Query: 30 PRRVVALDGIFIKDVACGGVHTCALTSKGALYAWGGCQAGQLGLGPQTRSFSFIPNESDT 89
PR+V+ ++ G H+ AL S + +WG + GQLG G D
Sbjct: 15 PRKVLI--------ISAGASHSVALLSGDIVCSWGRGEDGQLGHG-------------DA 53
Query: 90 YFRNIPI-LVVPNGVQLVA--CGHSHTLVYMRDG-KIHGWGYNSYGQAANEKSTYAWYPS 145
R P L +G Q+V+ CG HT+ Y + G +++ WG+ +G+ + S+ + P
Sbjct: 54 EDRPSPTQLSALDGHQIVSVTCGADHTVAYSQSGMEVYSWGWGDFGRLGHGNSSDLFTPL 113
Query: 146 PVDWCVG-EVRKLAAGGGHSAVLT 168
P+ G ++++A G H +T
Sbjct: 114 PIKALHGIRIKQIACGDSHCLAVT 137
>pdb|4DNV|A Chain A, Crystal Structure Of The W285f Mutant Of Uvb-Resistance
Protein Uvr8
pdb|4DNV|B Chain B, Crystal Structure Of The W285f Mutant Of Uvb-Resistance
Protein Uvr8
pdb|4DNV|C Chain C, Crystal Structure Of The W285f Mutant Of Uvb-Resistance
Protein Uvr8
pdb|4DNV|D Chain D, Crystal Structure Of The W285f Mutant Of Uvb-Resistance
Protein Uvr8
Length = 370
Score = 81.6 bits (200), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 55/159 (34%), Positives = 75/159 (47%), Gaps = 13/159 (8%)
Query: 3 LDIYTWGLGSVGQLGHCSLQSGDKELLPRRVVALDGIFIKDVACGGVHTCALTSKGALYA 62
+++Y+WG G G+LGH + P + AL GI IK +ACG H A+T +G + +
Sbjct: 76 MEVYSWGWGDFGRLGHGN---SSDLFTPLPIKALHGIRIKQIACGDSHCLAVTMEGEVQS 132
Query: 63 WGGCQAGQLGLGPQTRSFSFIPNESDTYFRNIPILVVPNGVQLVACGHSHTLVYMRDGKI 122
WG Q GQLGLG S +P + F I I ++VA G HT DG +
Sbjct: 133 WGRNQNGQLGLGDTED--SLVPQKIQA-FEGIRI-------KMVAAGAEHTAAVTEDGDL 182
Query: 123 HGWGYNSYGQAANEKSTYAWYPSPVDWCVGEVRKLAAGG 161
+GWG+ YG T P V GE + A G
Sbjct: 183 YGWGWGRYGNLGLGDRTDRLVPERVTSTGGEKMSMVACG 221
Score = 74.7 bits (182), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 48/135 (35%), Positives = 69/135 (51%), Gaps = 19/135 (14%)
Query: 1 MHLDIYTWGLGSVGQLGHCSLQSGDKELLPRRVVALDGIFIKDVACGGVHTCALTSKGAL 60
M ++ +WG GQLG L + L+P+++ A +GI IK VA G HT A+T G L
Sbjct: 126 MEGEVQSWGRNQNGQLG---LGDTEDSLVPQKIQAFEGIRIKMVAAGAEHTAAVTEDGDL 182
Query: 61 YAWGGCQAGQLGLGPQTRSFSFIPNESDTYFRNIPILVVPNG---VQLVACGHSHTLVYM 117
Y WG + G LGLG +T R +P V G + +VACG HT+
Sbjct: 183 YGWGWGRYGNLGLGDRTD-------------RLVPERVTSTGGEKMSMVACGWRHTISVS 229
Query: 118 RDGKIHGWGYNSYGQ 132
G ++ +G++ YGQ
Sbjct: 230 YSGALYTYGWSKYGQ 244
Score = 73.2 bits (178), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 54/167 (32%), Positives = 81/167 (48%), Gaps = 19/167 (11%)
Query: 7 TWGLGSVGQLGHCSLQSGDKE--LLPRRVVALDGIFIKDVACGGVHTCALTSKGA-LYAW 63
+WG G GQLGH GD E P ++ ALDG I V CG HT A + G +Y+W
Sbjct: 27 SWGRGEDGQLGH-----GDAEDRPSPTQLSALDGHQIVSVTCGADHTVAYSQSGMEVYSW 81
Query: 64 GGCQAGQLGLGPQTRSFSFIPNESDTYFRNIPILVVPNGVQLVACGHSHTLVYMRDGKIH 123
G G+LG G + F+ +P ++ R ++ +ACG SH L +G++
Sbjct: 82 GWGDFGRLGHGNSSDLFTPLPIKALHGIR----------IKQIACGDSHCLAVTMEGEVQ 131
Query: 124 GWGYNSYGQAANEKSTYAWYPSPVDWCVG-EVRKLAAGGGHSAVLTD 169
WG N GQ + + P + G ++ +AAG H+A +T+
Sbjct: 132 SWGRNQNGQLGLGDTEDSLVPQKIQAFEGIRIKMVAAGAEHTAAVTE 178
Score = 71.2 bits (173), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 44/129 (34%), Positives = 65/129 (50%), Gaps = 13/129 (10%)
Query: 4 DIYTWGLGSVGQLGHCSLQSGDKELLPRRVVALDGIFIKDVACGGVHTCALTSKGALYAW 63
D+Y WG G G LG L L+P RV + G + VACG HT +++ GALY +
Sbjct: 181 DLYGWGWGRYGNLG---LGDRTDRLVPERVTSTGGEKMSMVACGWRHTISVSYSGALYTY 237
Query: 64 GGCQAGQLGLGPQTRSFSFIPNESDTYFRNIPILVVPNGVQLVACGHSHTLVYMRDGKIH 123
G + GQLG G IP++ + + + ++ G HT+ DGK++
Sbjct: 238 GWSKYGQLGHGDLED--HLIPHKLEALSNSF--------ISQISGGFRHTMALTSDGKLY 287
Query: 124 GWGYNSYGQ 132
GWG+N +GQ
Sbjct: 288 GWGWNKFGQ 296
Score = 67.4 bits (163), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 47/147 (31%), Positives = 69/147 (46%), Gaps = 19/147 (12%)
Query: 5 IYTWGLGSVGQLGHCSLQSGDKELLPRRVVALDGIFIKDVACGGVHTCALTSKGALYAWG 64
+YT+G GQLGH L+ L+P ++ AL FI ++ G HT ALTS G LY WG
Sbjct: 234 LYTYGWSKYGQLGHGDLED---HLIPHKLEALSNSFISQISGGFRHTMALTSDGKLYGWG 290
Query: 65 GCQAGQLGLGPQTRSFSFIPNESDTYFRNIPILV-VPNGVQL--VACGHSHTLVYMRDGK 121
+ GQ+G+G S P+ V P+ ++ V+CG HTL
Sbjct: 291 WNKFGQVGVGNNLDQCS-------------PVQVRFPDDQKVVQVSCGWRHTLAVTERNN 337
Query: 122 IHGWGYNSYGQAANEKSTYAWYPSPVD 148
+ WG + GQ +S +P ++
Sbjct: 338 VFAWGRGTNGQLGIGESVDRNFPKIIE 364
Score = 45.4 bits (106), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 39/144 (27%), Positives = 67/144 (46%), Gaps = 26/144 (18%)
Query: 30 PRRVVALDGIFIKDVACGGVHTCALTSKGALYAWGGCQAGQLGLGPQTRSFSFIPNESDT 89
PR+V+ ++ G H+ AL S + +WG + GQLG G D
Sbjct: 3 PRKVLI--------ISAGASHSVALLSGDIVCSWGRGEDGQLGHG-------------DA 41
Query: 90 YFRNIPI-LVVPNGVQLVA--CGHSHTLVYMRDG-KIHGWGYNSYGQAANEKSTYAWYPS 145
R P L +G Q+V+ CG HT+ Y + G +++ WG+ +G+ + S+ + P
Sbjct: 42 EDRPSPTQLSALDGHQIVSVTCGADHTVAYSQSGMEVYSWGWGDFGRLGHGNSSDLFTPL 101
Query: 146 PVDWCVG-EVRKLAAGGGHSAVLT 168
P+ G ++++A G H +T
Sbjct: 102 PIKALHGIRIKQIACGDSHCLAVT 125
>pdb|4DNW|A Chain A, Crystal Structure Of Uvb-Resistance Protein Uvr8
pdb|4DNW|B Chain B, Crystal Structure Of Uvb-Resistance Protein Uvr8
Length = 374
Score = 81.3 bits (199), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 55/159 (34%), Positives = 75/159 (47%), Gaps = 13/159 (8%)
Query: 3 LDIYTWGLGSVGQLGHCSLQSGDKELLPRRVVALDGIFIKDVACGGVHTCALTSKGALYA 62
+++Y+WG G G+LGH + P + AL GI IK +ACG H A+T +G + +
Sbjct: 76 MEVYSWGWGDFGRLGHGN---SSDLFTPLPIKALHGIRIKQIACGDSHCLAVTMEGEVQS 132
Query: 63 WGGCQAGQLGLGPQTRSFSFIPNESDTYFRNIPILVVPNGVQLVACGHSHTLVYMRDGKI 122
WG Q GQLGLG S +P + F I I ++VA G HT DG +
Sbjct: 133 WGRNQNGQLGLGDTED--SLVPQKIQA-FEGIRI-------KMVAAGAEHTAAVTEDGDL 182
Query: 123 HGWGYNSYGQAANEKSTYAWYPSPVDWCVGEVRKLAAGG 161
+GWG+ YG T P V GE + A G
Sbjct: 183 YGWGWGRYGNLGLGDRTDRLVPERVTSTGGEKMSMVACG 221
Score = 74.7 bits (182), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 48/135 (35%), Positives = 69/135 (51%), Gaps = 19/135 (14%)
Query: 1 MHLDIYTWGLGSVGQLGHCSLQSGDKELLPRRVVALDGIFIKDVACGGVHTCALTSKGAL 60
M ++ +WG GQLG L + L+P+++ A +GI IK VA G HT A+T G L
Sbjct: 126 MEGEVQSWGRNQNGQLG---LGDTEDSLVPQKIQAFEGIRIKMVAAGAEHTAAVTEDGDL 182
Query: 61 YAWGGCQAGQLGLGPQTRSFSFIPNESDTYFRNIPILVVPNG---VQLVACGHSHTLVYM 117
Y WG + G LGLG +T R +P V G + +VACG HT+
Sbjct: 183 YGWGWGRYGNLGLGDRTD-------------RLVPERVTSTGGEKMSMVACGWRHTISVS 229
Query: 118 RDGKIHGWGYNSYGQ 132
G ++ +G++ YGQ
Sbjct: 230 YSGALYTYGWSKYGQ 244
Score = 73.2 bits (178), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 54/167 (32%), Positives = 81/167 (48%), Gaps = 19/167 (11%)
Query: 7 TWGLGSVGQLGHCSLQSGDKE--LLPRRVVALDGIFIKDVACGGVHTCALTSKGA-LYAW 63
+WG G GQLGH GD E P ++ ALDG I V CG HT A + G +Y+W
Sbjct: 27 SWGRGEDGQLGH-----GDAEDRPSPTQLSALDGHQIVSVTCGADHTVAYSQSGMEVYSW 81
Query: 64 GGCQAGQLGLGPQTRSFSFIPNESDTYFRNIPILVVPNGVQLVACGHSHTLVYMRDGKIH 123
G G+LG G + F+ +P ++ R ++ +ACG SH L +G++
Sbjct: 82 GWGDFGRLGHGNSSDLFTPLPIKALHGIR----------IKQIACGDSHCLAVTMEGEVQ 131
Query: 124 GWGYNSYGQAANEKSTYAWYPSPVDWCVG-EVRKLAAGGGHSAVLTD 169
WG N GQ + + P + G ++ +AAG H+A +T+
Sbjct: 132 SWGRNQNGQLGLGDTEDSLVPQKIQAFEGIRIKMVAAGAEHTAAVTE 178
Score = 67.4 bits (163), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 47/147 (31%), Positives = 69/147 (46%), Gaps = 19/147 (12%)
Query: 5 IYTWGLGSVGQLGHCSLQSGDKELLPRRVVALDGIFIKDVACGGVHTCALTSKGALYAWG 64
+YT+G GQLGH L+ L+P ++ AL FI ++ G HT ALTS G LY WG
Sbjct: 234 LYTYGWSKYGQLGHGDLED---HLIPHKLEALSNSFISQISGGWRHTMALTSDGKLYGWG 290
Query: 65 GCQAGQLGLGPQTRSFSFIPNESDTYFRNIPILV-VPNGVQL--VACGHSHTLVYMRDGK 121
+ GQ+G+G S P+ V P+ ++ V+CG HTL
Sbjct: 291 WNKFGQVGVGNNLDQCS-------------PVQVRFPDDQKVVQVSCGWRHTLAVTERNN 337
Query: 122 IHGWGYNSYGQAANEKSTYAWYPSPVD 148
+ WG + GQ +S +P ++
Sbjct: 338 VFAWGRGTNGQLGIGESVDRNFPKIIE 364
Score = 45.1 bits (105), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 39/144 (27%), Positives = 67/144 (46%), Gaps = 26/144 (18%)
Query: 30 PRRVVALDGIFIKDVACGGVHTCALTSKGALYAWGGCQAGQLGLGPQTRSFSFIPNESDT 89
PR+V+ ++ G H+ AL S + +WG + GQLG G D
Sbjct: 3 PRKVLI--------ISAGASHSVALLSGDIVCSWGRGEDGQLGHG-------------DA 41
Query: 90 YFRNIPI-LVVPNGVQLVA--CGHSHTLVYMRDG-KIHGWGYNSYGQAANEKSTYAWYPS 145
R P L +G Q+V+ CG HT+ Y + G +++ WG+ +G+ + S+ + P
Sbjct: 42 EDRPSPTQLSALDGHQIVSVTCGADHTVAYSQSGMEVYSWGWGDFGRLGHGNSSDLFTPL 101
Query: 146 PVDWCVG-EVRKLAAGGGHSAVLT 168
P+ G ++++A G H +T
Sbjct: 102 PIKALHGIRIKQIACGDSHCLAVT 125
>pdb|4DNU|A Chain A, Crystal Structure Of The W285a Mutant Of Uvb-Resistance
Protein Uvr8
Length = 372
Score = 77.8 bits (190), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 53/150 (35%), Positives = 70/150 (46%), Gaps = 13/150 (8%)
Query: 4 DIYTWGLGSVGQLGHCSLQSGDKELLPRRVVALDGIFIKDVACGGVHTCALTSKGALYAW 63
++Y+WG G G+LGH + P + AL GI IK +ACG H A+T +G + +W
Sbjct: 79 EVYSWGWGDFGRLGHGN---SSDLFTPLPIKALHGIRIKQIACGDSHCLAVTXEGEVQSW 135
Query: 64 GGCQAGQLGLGPQTRSFSFIPNESDTYFRNIPILVVPNGVQLVACGHSHTLVYMRDGKIH 123
G Q GQLGLG S +P + F I I + VA G HT DG ++
Sbjct: 136 GRNQNGQLGLGDTED--SLVPQKIQA-FEGIRI-------KXVAAGAEHTAAVTEDGDLY 185
Query: 124 GWGYNSYGQAANEKSTYAWYPSPVDWCVGE 153
GWG+ YG T P V GE
Sbjct: 186 GWGWGRYGNLGLGDRTDRLVPERVTSTGGE 215
Score = 73.6 bits (179), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 55/171 (32%), Positives = 82/171 (47%), Gaps = 19/171 (11%)
Query: 7 TWGLGSVGQLGHCSLQSGDKE--LLPRRVVALDGIFIKDVACGGVHTCALTSKGA-LYAW 63
+WG G GQLGH GD E P ++ ALDG I V CG HT A + G +Y+W
Sbjct: 29 SWGRGEDGQLGH-----GDAEDRPSPTQLSALDGHQIVSVTCGADHTVAYSQSGXEVYSW 83
Query: 64 GGCQAGQLGLGPQTRSFSFIPNESDTYFRNIPILVVPNGVQLVACGHSHTLVYMRDGKIH 123
G G+LG G + F+ +P ++ R ++ +ACG SH L +G++
Sbjct: 84 GWGDFGRLGHGNSSDLFTPLPIKALHGIR----------IKQIACGDSHCLAVTXEGEVQ 133
Query: 124 GWGYNSYGQAANEKSTYAWYPSPVDWCVG-EVRKLAAGGGHSAVLTDACSL 173
WG N GQ + + P + G ++ +AAG H+A +T+ L
Sbjct: 134 SWGRNQNGQLGLGDTEDSLVPQKIQAFEGIRIKXVAAGAEHTAAVTEDGDL 184
Score = 72.4 bits (176), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 53/174 (30%), Positives = 81/174 (46%), Gaps = 20/174 (11%)
Query: 4 DIYTWGLGSVGQLGHCSLQSGDKELLPRRVVALDGIFIKDVACGGVHTCALTSKGALYAW 63
++ +WG GQLG L + L+P+++ A +GI IK VA G HT A+T G LY W
Sbjct: 131 EVQSWGRNQNGQLG---LGDTEDSLVPQKIQAFEGIRIKXVAAGAEHTAAVTEDGDLYGW 187
Query: 64 GGCQAGQLGLGPQTRSFSFIPNESDTYFRNIPILVVPNGVQ---LVACGHSHTLVYMRDG 120
G + G LGLG +T R +P V G + VACG HT+ G
Sbjct: 188 GWGRYGNLGLGDRTD-------------RLVPERVTSTGGEKXSXVACGWRHTISVSYSG 234
Query: 121 KIHGWGYNSYGQAANEKSTYAWYPSPVDWCVGE-VRKLAAGGGHSAVLTDACSL 173
++ +G++ YGQ + P ++ + +++ G H+ LT L
Sbjct: 235 ALYTYGWSKYGQLGHGDLEDHLIPHKLEALSNSFISQISGGARHTXALTSDGKL 288
Score = 68.2 bits (165), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 47/147 (31%), Positives = 69/147 (46%), Gaps = 19/147 (12%)
Query: 5 IYTWGLGSVGQLGHCSLQSGDKELLPRRVVALDGIFIKDVACGGVHTCALTSKGALYAWG 64
+YT+G GQLGH L+ L+P ++ AL FI ++ G HT ALTS G LY WG
Sbjct: 236 LYTYGWSKYGQLGHGDLED---HLIPHKLEALSNSFISQISGGARHTXALTSDGKLYGWG 292
Query: 65 GCQAGQLGLGPQTRSFSFIPNESDTYFRNIPILV-VPNGVQL--VACGHSHTLVYMRDGK 121
+ GQ+G+G S P+ V P+ ++ V+CG HTL
Sbjct: 293 WNKFGQVGVGNNLDQCS-------------PVQVRFPDDQKVVQVSCGWRHTLAVTERNN 339
Query: 122 IHGWGYNSYGQAANEKSTYAWYPSPVD 148
+ WG + GQ +S +P ++
Sbjct: 340 VFAWGRGTNGQLGIGESVDRNFPKIIE 366
Score = 45.1 bits (105), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 39/144 (27%), Positives = 67/144 (46%), Gaps = 26/144 (18%)
Query: 30 PRRVVALDGIFIKDVACGGVHTCALTSKGALYAWGGCQAGQLGLGPQTRSFSFIPNESDT 89
PR+V+ ++ G H+ AL S + +WG + GQLG G D
Sbjct: 5 PRKVLI--------ISAGASHSVALLSGDIVCSWGRGEDGQLGHG-------------DA 43
Query: 90 YFRNIPI-LVVPNGVQLVA--CGHSHTLVYMRDG-KIHGWGYNSYGQAANEKSTYAWYPS 145
R P L +G Q+V+ CG HT+ Y + G +++ WG+ +G+ + S+ + P
Sbjct: 44 EDRPSPTQLSALDGHQIVSVTCGADHTVAYSQSGXEVYSWGWGDFGRLGHGNSSDLFTPL 103
Query: 146 PVDWCVG-EVRKLAAGGGHSAVLT 168
P+ G ++++A G H +T
Sbjct: 104 PIKALHGIRIKQIACGDSHCLAVT 127
>pdb|3KCI|A Chain A, The Third Rld Domain Of Herc2
Length = 389
Score = 62.4 bits (150), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 54/173 (31%), Positives = 78/173 (45%), Gaps = 22/173 (12%)
Query: 4 DIYTWGLGSVGQLGHCSLQSGDKELLPRRVVALDGIFIKDVACGGVHTCALTSKGALYAW 63
++Y+WG G+LGH + D+ PR + +L GI + DVA GG H+ +T+ G LY W
Sbjct: 127 EVYSWGEAEDGKLGHGNRSPCDR---PRVIESLRGIEVVDVAAGGAHSACVTAAGDLYTW 183
Query: 64 GGCQAGQLGLGPQTRSFSFIPNESDTYFRNIPILVVP---NGVQLVACGH--SHTLVYMR 118
G + G+LG SD+ + P LV + V +ACG + TL
Sbjct: 184 GKGRYGRLG-------------HSDSEDQLKPKLVEALQGHRVVDIACGSGDAQTLCLTD 230
Query: 119 DGKIHGWGYNSYGQAANEKSTYAWYPSPVDWCVG-EVRKLAAGGGHSAVLTDA 170
D + WG YG+ S P +D G V K+ G S LT +
Sbjct: 231 DDTVWSWGDGDYGKLGRGGSDGCKVPMKIDSLTGLGVVKVECGSQFSVALTKS 283
Score = 54.3 bits (129), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 45/163 (27%), Positives = 73/163 (44%), Gaps = 18/163 (11%)
Query: 5 IYTWGLGSVGQLGHCSLQSGDKELLPRRVVALDGIFIKDVACGGVHTCALTSKGALYAWG 64
+++WG G G+LG D +P ++ +L G+ + V CG + ALT GA+Y WG
Sbjct: 234 VWSWGDGDYGKLGR---GGSDGCKVPMKIDSLTGLGVVKVECGSQFSVALTKSGAVYTWG 290
Query: 65 GCQAGQLGLGPQTRSFSFIPNESDTYFRNIPILVVPNGVQL--VACGHSHTLVYMRDGKI 122
+LG G SD + R + G ++ +A G H + DG++
Sbjct: 291 KGDYHRLGHG------------SDDHVRRPRQVQGLQGKKVIAIATGSLHCVCCTEDGEV 338
Query: 123 HGWGYNSYGQAANEKSTYAWYPSPVDWCVG-EVRKLAAGGGHS 164
+ WG N GQ + + P V G +V ++A G H+
Sbjct: 339 YTWGDNDEGQLGDGTTNAIQRPRLVAALQGKKVNRVACGSAHT 381
Score = 52.0 bits (123), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 40/115 (34%), Positives = 49/115 (42%), Gaps = 19/115 (16%)
Query: 5 IYTWGLGSVGQLGHCSLQSGDKELLPRRVVALDGIFIKDVACGGVHTCALTSKGALYAWG 64
+YTWG G +LGH S D PR+V L G + +A G +H T G +Y WG
Sbjct: 286 VYTWGKGDYHRLGH---GSDDHVRRPRQVQGLQGKKVIAIATGSLHCVCCTEDGEVYTWG 342
Query: 65 GCQAGQLGLGPQTRSFSFIPNESDTYFRNIPILVVP---NGVQLVACGHSHTLVY 116
GQLG G T P LV V VACG +HTL +
Sbjct: 343 DNDEGQLGDGT-------------TNAIQRPRLVAALQGKKVNRVACGSAHTLAW 384
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 43/141 (30%), Positives = 66/141 (46%), Gaps = 13/141 (9%)
Query: 30 PRRVVALDGIFIKDVAC--GGVHTCALTSKGALYAWGGCQAGQLGLGPQTRSFSFIPNES 87
P + ++ +FIK VA GG H AL+S+G +Y+WG + G+LG G RS P
Sbjct: 96 PTLLESIQHVFIKKVAVNSGGKHCLALSSEGEVYSWGEAEDGKLGHG--NRSPCDRPRVI 153
Query: 88 DTYFRNIPILVVPNGVQLVACGHSHTLVYMRDGKIHGWGYNSYGQAANEKSTYAWYPSPV 147
++ R I ++ VA G +H+ G ++ WG YG+ + S P V
Sbjct: 154 ES-LRGIEVVD-------VAAGGAHSACVTAAGDLYTWGKGRYGRLGHSDSEDQLKPKLV 205
Query: 148 DWCVG-EVRKLAAGGGHSAVL 167
+ G V +A G G + L
Sbjct: 206 EALQGHRVVDIACGSGDAQTL 226
Score = 38.1 bits (87), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 29/53 (54%), Gaps = 3/53 (5%)
Query: 4 DIYTWGLGSVGQLGHCSLQSGDKELLPRRVVALDGIFIKDVACGGVHTCALTS 56
++YTWG GQLG + + + PR V AL G + VACG HT A ++
Sbjct: 337 EVYTWGDNDEGQLGDGTTNAIQR---PRLVAALQGKKVNRVACGSAHTLAWST 386
Score = 37.4 bits (85), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 50/170 (29%), Positives = 70/170 (41%), Gaps = 12/170 (7%)
Query: 5 IYTWGLGSVGQLGHCSLQSGDKELLPRRVVALDGIFIKDVACGGVHTCALTSKGALYAWG 64
IY WG GQLG G K +P AL + + G A+T+ G LYA
Sbjct: 22 IYGWGHNHRGQLGGIE---GAKVKVPTPCEALATLRPVQLIGGEQTLFAVTADGKLYA-T 77
Query: 65 GCQAGQLGLGPQTRSFSFIPNESDTYFRNIPILVVPNGVQLVACGHSHTLVYMRDGKIHG 124
G AG T S S + T +I + + V G H L +G+++
Sbjct: 78 GYGAGGRLGIGGTESVS-----TPTLLESIQHVFIKK--VAVNSGGKHCLALSSEGEVYS 130
Query: 125 WGYNSYGQAANEKSTYAWYPSPVDWCVG-EVRKLAAGGGHSAVLTDACSL 173
WG G+ + + P ++ G EV +AAGG HSA +T A L
Sbjct: 131 WGEAEDGKLGHGNRSPCDRPRVIESLRGIEVVDVAAGGAHSACVTAAGDL 180
Score = 26.9 bits (58), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 11/35 (31%), Positives = 17/35 (48%)
Query: 114 LVYMRDGKIHGWGYNSYGQAANEKSTYAWYPSPVD 148
L + G I+GWG+N GQ + P+P +
Sbjct: 14 LYFQGSGTIYGWGHNHRGQLGGIEGAKVKVPTPCE 48
>pdb|3OF7|A Chain A, The Crystal Structure Of Prp20p From Saccharomyces
Cerevisiae And Its Binding Properties To Gsp1p And
Histones
Length = 473
Score = 50.4 bits (119), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 40/147 (27%), Positives = 60/147 (40%), Gaps = 20/147 (13%)
Query: 30 PRRVVALDGIFIKDVACGGVHTCALTSKGALYAWGGCQAGQLGLGPQTRSFSFIPNESDT 89
P +V I +A G H L +G ++AWG Q QLG R
Sbjct: 195 PWKVPTFSKYNIVQLAPGKDHILFLDEEGMVFAWGNGQQNQLGRKVMER----------- 243
Query: 90 YFRNIPILVVPNG---VQLVACGHSHTLVYMRDGKIHGWGYNSYGQ--AANEKSTYAWYP 144
FR + P G V+ +A G +H +D K+ WG N +GQ + + A
Sbjct: 244 -FRLKTLDPRPFGLRHVKYIASGENHCFALTKDNKLVSWGLNQFGQCGVSEDVEDGALVT 302
Query: 145 SPVDWCVGE---VRKLAAGGGHSAVLT 168
P + + +R +AAG HS +L+
Sbjct: 303 KPKRLALPDNVVIRSIAAGEHHSLILS 329
Score = 49.7 bits (117), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/127 (25%), Positives = 59/127 (46%), Gaps = 5/127 (3%)
Query: 5 IYTWGLGSVGQLGHCS-LQSGDKELLPRRVVALDGIFIKDVACGGVHTCALTSKGALYAW 63
+ +WGL GQ G ++ G P+R+ D + I+ +A G H+ L+ G LY+
Sbjct: 278 LVSWGLNQFGQCGVSEDVEDGALVTKPKRLALPDNVVIRSIAAGEHHSLILSQDGDLYSC 337
Query: 64 GGCQAGQLGLGPQTRSFSFIPNESDTYFRNIPILVVPNGV---QLVACGHSHTLVYMRDG 120
G ++G+ P+ + + R +P+ N V + VA G H++ ++G
Sbjct: 338 GRLDMFEVGI-PKDNLPEYTYKDVHGKARAVPLPTKLNNVPKFKSVAAGSHHSVAVAQNG 396
Query: 121 KIHGWGY 127
+ WG+
Sbjct: 397 IAYSWGF 403
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 36/72 (50%), Gaps = 2/72 (2%)
Query: 3 LDIYTWGLGSVGQLGHCSLQSGDKELLPR--RVVALDGIFIKDVACGGVHTCALTSKGAL 60
LDI+ WG GS+ +LG L + PR + D I A GG+HT AL + +
Sbjct: 29 LDIFCWGTGSMCELGLGPLAKNKEVKRPRLNPFLPRDEAKIISFAVGGMHTLALDEESNV 88
Query: 61 YAWGGCQAGQLG 72
++WG G LG
Sbjct: 89 WSWGCNDVGALG 100
Score = 40.4 bits (93), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 37/128 (28%), Positives = 49/128 (38%), Gaps = 14/128 (10%)
Query: 51 TCALTSKGALYAWGG--CQAGQLGLGPQTRSFSFIPNESDTYFRNIPILVVPNGVQLVAC 108
+CAL S G +YAWG C G LG P +P N VQL A
Sbjct: 160 SCALFSNGEVYAWGTFRCNEGILGFYQDKIKIQKTP-------WKVPTFSKYNIVQL-AP 211
Query: 109 GHSHTLVYMRDGKIHGWG---YNSYGQAANEKSTYAWYPSPVDWCVGEVRKLAAGGGHSA 165
G H L +G + WG N G+ E+ P + + V+ +A+G H
Sbjct: 212 GKDHILFLDEEGMVFAWGNGQQNQLGRKVMERFRLKTL-DPRPFGLRHVKYIASGENHCF 270
Query: 166 VLTDACSL 173
LT L
Sbjct: 271 ALTKDNKL 278
Score = 31.6 bits (70), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 19/35 (54%)
Query: 41 IKDVACGGVHTCALTSKGALYAWGGCQAGQLGLGP 75
K VA G H+ A+ G Y+WG + +GLGP
Sbjct: 379 FKSVAAGSHHSVAVAQNGIAYSWGFGETYAVGLGP 413
>pdb|3MVD|K Chain K, Crystal Structure Of The Chromatin Factor Rcc1 In Complex
With The Nucleosome Core Particle
pdb|3MVD|L Chain L, Crystal Structure Of The Chromatin Factor Rcc1 In Complex
With The Nucleosome Core Particle
Length = 423
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 48/170 (28%), Positives = 75/170 (44%), Gaps = 19/170 (11%)
Query: 4 DIYTWGLGSVGQLGHCSLQSGDKELLPRRVVALDGIF-IKDVACGGVHTCALTSKGALYA 62
++ G G VGQLG G+ L +R+ + GI D++ GG+H LT G +Y+
Sbjct: 44 NVLVCGNGDVGQLG-----LGEDILERKRLSPVAGIPDAVDISAGGMHNLVLTKSGDIYS 98
Query: 63 WGGCQAGQLGLGPQTRSFSFIPNESDTYFRNIPILV-VPNGVQLVACGHSHTLVYMRDGK 121
+G G LG R S +ES P L+ +P ++ G SH+ + DG+
Sbjct: 99 FGCNDEGALG-----RDTSEDGSESK------PDLIDLPGKALCISAGDSHSACLLEDGR 147
Query: 122 IHGWGYNSYGQAANEKSTYAWYPSPVDWCVGEV-RKLAAGGGHSAVLTDA 170
+ WG + +P+D G V +A+G H +LT A
Sbjct: 148 VFAWGSFRDSHGNMGLTIDGNKRTPIDLMEGTVCCSIASGADHLVILTTA 197
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 32/136 (23%), Positives = 59/136 (43%), Gaps = 4/136 (2%)
Query: 36 LDGIFIKDVACGGVHTCALTSKGALYAWGGCQAGQLGLGPQTRSFSFIPNESDTYFRNIP 95
++G +A G H LT+ G ++ G + GQLG + RS S
Sbjct: 176 MEGTVCCSIASGADHLVILTTAGKVFTVGCAEQGQLGRLSE-RSISGEGRRGKRDLLRPT 234
Query: 96 ILVVPNGVQLVACGHSHTLVYMRDGK---IHGWGYNSYGQAANEKSTYAWYPSPVDWCVG 152
L++ A ++ +MR+ + I G N++ Q A+E + +P+ +
Sbjct: 235 QLIITRAKPFEAIWATNYCTFMRESQTQVIWATGLNNFKQLAHETKGKEFALTPIKTELK 294
Query: 153 EVRKLAAGGGHSAVLT 168
++R +A G H+ +LT
Sbjct: 295 DIRHIAGGQHHTVILT 310
Score = 33.5 bits (75), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 41/165 (24%), Positives = 62/165 (37%), Gaps = 16/165 (9%)
Query: 5 IYTWGLGSVGQLGHCSLQSGDKELLPRRVVALDGIFIKDVACGGVHTCALTSKGALYAWG 64
I+ GL + QL H + + L P + D I+ +A G HT LT+ G
Sbjct: 264 IWATGLNNFKQLAH-ETKGKEFALTPIKTELKD---IRHIAGGQHHTVILTTDLKCSVVG 319
Query: 65 GCQAGQLGLGPQTRSFSFIPNESDTYFRNIPILVVPNGVQLVACGHSHTLVYMRDGKIHG 124
+ G+LGLG + D + + + + V CG + DGK++
Sbjct: 320 RPEYGRLGLG----------DVKDVVEKPTIVKKLTEKIVSVGCGEVCSYAVTIDGKLYS 369
Query: 125 WGYNSYGQAANEKSTYAWYPSPV--DWCVGEVRKLAAGGGHSAVL 167
WG Q P V G+ LA+GGG A+
Sbjct: 370 WGSGVNNQLGVGDGDDELEPIVVVSKNTQGKHMLLASGGGQHAIF 414
>pdb|1A12|A Chain A, Regulator Of Chromosome Condensation (Rcc1) Of Human
pdb|1A12|B Chain B, Regulator Of Chromosome Condensation (Rcc1) Of Human
pdb|1A12|C Chain C, Regulator Of Chromosome Condensation (Rcc1) Of Human
Length = 413
Score = 45.1 bits (105), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 47/171 (27%), Positives = 73/171 (42%), Gaps = 23/171 (13%)
Query: 5 IYTWGLGSVGQLGHCSLQSGDKELLPRRVVALDGIFIKDVACGG--VHTCALTSKGALYA 62
+Y +GL + QLG +S +P+ + + V G HT + S+G Y+
Sbjct: 253 VYGFGLSNYHQLGTPGTESC---FIPQNLTSFKNSTKSWVGFSGGQHHTVCMDSEGKAYS 309
Query: 63 WGGCQAGQLGLGPQTRSFSFIPNESDTYFRNIPILVVPNGVQLVACGHSHTLVYMRDGKI 122
G + G+LGLG S IP T +P V VACG S +DG++
Sbjct: 310 LGRAEYGRLGLGEGAEEKS-IP----TLISRLP------AVSSVACGASVGYAVTKDGRV 358
Query: 123 HGWGYNSYGQAANEKSTYAWYPSPVDWCVGE-----VRKLAAGGGHSAVLT 168
WG + Q + AW SPV+ + V +++GG H+ +L
Sbjct: 359 FAWGMGTNYQLGTGQDEDAW--SPVEMMGKQLENRVVLSVSSGGQHTVLLV 407
Score = 44.7 bits (104), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 46/169 (27%), Positives = 69/169 (40%), Gaps = 22/169 (13%)
Query: 5 IYTWGLGSVGQLGHCSLQSGDKELLPRRVVALDGIF--IKDVACGGVHTCALTSKGALYA 62
+ T G G VGQLG + ++ R+ AL I + GG+HT L+ G +Y+
Sbjct: 29 VLTLGQGDVGQLGL------GENVMERKKPALVSIPEDVVQAEAGGMHTVCLSKSGQVYS 82
Query: 63 WGGCQAGQLGLGPQTRSFSFIPNESDTYFRNIPILVVPNGVQLVACGHSHTLVYMRDGKI 122
+G G LG +P + + + V V+ G SHT DG++
Sbjct: 83 FGCNDEGALGRDTSVEGSEMVPGKVELQEK----------VVQVSAGDSHTAALTDDGRV 132
Query: 123 HGWGY---NSYGQAANEKSTYAWYPSPVDWCVGEVRKLAAGGGHSAVLT 168
WG N+ E + P V V V K+A+G H +LT
Sbjct: 133 FLWGSFRDNNGVIGLLEPMKKSMVPVQVQLDV-PVVKVASGNDHLVMLT 180
Score = 38.1 bits (87), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 34/122 (27%), Positives = 49/122 (40%), Gaps = 14/122 (11%)
Query: 50 HTCALTSKGALYAWGGCQAGQLGLGPQTRSFSFIPNESDTYFRNIPILV-VPNGVQLVAC 108
H T G + G GQLGLG + R P LV +P V
Sbjct: 19 HRSHSTEPGLVLTLGQGDVGQLGLG------------ENVMERKKPALVSIPEDVVQAEA 66
Query: 109 GHSHTLVYMRDGKIHGWGYNSYGQAANEKSTYAWYPSPVDWCVGE-VRKLAAGGGHSAVL 167
G HT+ + G+++ +G N G + S P + E V +++AG H+A L
Sbjct: 67 GGMHTVCLSKSGQVYSFGCNDEGALGRDTSVEGSEMVPGKVELQEKVVQVSAGDSHTAAL 126
Query: 168 TD 169
TD
Sbjct: 127 TD 128
Score = 38.1 bits (87), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 42/165 (25%), Positives = 66/165 (40%), Gaps = 24/165 (14%)
Query: 21 LQSGDKELLPRRVVALDGIFIKDVACGGVHTCALTSKGALYAWGGCQAGQLGLGPQTRSF 80
L+ K ++P +V LD +K VA G H LT+ G LY G + GQLG P+
Sbjct: 148 LEPMKKSMVPVQV-QLDVPVVK-VASGNDHLVMLTADGDLYTLGCGEQGQLGRVPE---- 201
Query: 81 SFIPNESDTYFRNIPILVVPNGVQLVA-------------CGHSHTLVYMRDGKIHGWGY 127
N + + L+VP V L + CG T +G ++G+G
Sbjct: 202 -LFANRGGR--QGLERLLVPKCVMLKSRGSRGHVRFQDAFCGAYFTFAISHEGHVYGFGL 258
Query: 128 NSYGQAANEKSTYAWYPSPVDWCVGEVRKLA--AGGGHSAVLTDA 170
++Y Q + + P + + +GG H V D+
Sbjct: 259 SNYHQLGTPGTESCFIPQNLTSFKNSTKSWVGFSGGQHHTVCMDS 303
>pdb|1I2M|B Chain B, Ran-Rcc1-So4 Complex
pdb|1I2M|D Chain D, Ran-Rcc1-So4 Complex
Length = 402
Score = 45.1 bits (105), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 47/171 (27%), Positives = 73/171 (42%), Gaps = 23/171 (13%)
Query: 5 IYTWGLGSVGQLGHCSLQSGDKELLPRRVVALDGIFIKDVACGG--VHTCALTSKGALYA 62
+Y +GL + QLG +S +P+ + + V G HT + S+G Y+
Sbjct: 242 VYGFGLSNYHQLGTPGTESC---FIPQNLTSFKNSTKSWVGFSGGQHHTVCMDSEGKAYS 298
Query: 63 WGGCQAGQLGLGPQTRSFSFIPNESDTYFRNIPILVVPNGVQLVACGHSHTLVYMRDGKI 122
G + G+LGLG S IP T +P V VACG S +DG++
Sbjct: 299 LGRAEYGRLGLGEGAEEKS-IP----TLISRLP------AVSSVACGASVGYAVTKDGRV 347
Query: 123 HGWGYNSYGQAANEKSTYAWYPSPVDWCVGE-----VRKLAAGGGHSAVLT 168
WG + Q + AW SPV+ + V +++GG H+ +L
Sbjct: 348 FAWGMGTNYQLGTGQDEDAW--SPVEMMGKQLENRVVLSVSSGGQHTVLLV 396
Score = 44.3 bits (103), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 46/169 (27%), Positives = 69/169 (40%), Gaps = 22/169 (13%)
Query: 5 IYTWGLGSVGQLGHCSLQSGDKELLPRRVVALDGIF--IKDVACGGVHTCALTSKGALYA 62
+ T G G VGQLG + ++ R+ AL I + GG+HT L+ G +Y+
Sbjct: 18 VLTLGQGDVGQLGL------GENVMERKKPALVSIPEDVVQAEAGGMHTVCLSKSGQVYS 71
Query: 63 WGGCQAGQLGLGPQTRSFSFIPNESDTYFRNIPILVVPNGVQLVACGHSHTLVYMRDGKI 122
+G G LG +P + + + V V+ G SHT DG++
Sbjct: 72 FGCNDEGALGRDTSVEGSEMVPGKVE----------LQEKVVQVSAGDSHTAALTDDGRV 121
Query: 123 HGWGY---NSYGQAANEKSTYAWYPSPVDWCVGEVRKLAAGGGHSAVLT 168
WG N+ E + P V V V K+A+G H +LT
Sbjct: 122 FLWGSFRDNNGVIGLLEPMKKSMVPVQVQLDV-PVVKVASGNDHLVMLT 169
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 42/165 (25%), Positives = 66/165 (40%), Gaps = 24/165 (14%)
Query: 21 LQSGDKELLPRRVVALDGIFIKDVACGGVHTCALTSKGALYAWGGCQAGQLGLGPQTRSF 80
L+ K ++P +V LD +K VA G H LT+ G LY G + GQLG P+
Sbjct: 137 LEPMKKSMVPVQV-QLDVPVVK-VASGNDHLVMLTADGDLYTLGCGEQGQLGRVPE---- 190
Query: 81 SFIPNESDTYFRNIPILVVPNGVQLVA-------------CGHSHTLVYMRDGKIHGWGY 127
N + + L+VP V L + CG T +G ++G+G
Sbjct: 191 -LFANRGGR--QGLERLLVPKCVMLKSRGSRGHVRFQDAFCGAYFTFAISHEGHVYGFGL 247
Query: 128 NSYGQAANEKSTYAWYPSPVDWCVGEVRKLA--AGGGHSAVLTDA 170
++Y Q + + P + + +GG H V D+
Sbjct: 248 SNYHQLGTPGTESCFIPQNLTSFKNSTKSWVGFSGGQHHTVCMDS 292
Score = 38.1 bits (87), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 34/122 (27%), Positives = 49/122 (40%), Gaps = 14/122 (11%)
Query: 50 HTCALTSKGALYAWGGCQAGQLGLGPQTRSFSFIPNESDTYFRNIPILV-VPNGVQLVAC 108
H T G + G GQLGLG + R P LV +P V
Sbjct: 8 HRSHSTEPGLVLTLGQGDVGQLGLG------------ENVMERKKPALVSIPEDVVQAEA 55
Query: 109 GHSHTLVYMRDGKIHGWGYNSYGQAANEKSTYAWYPSPVDWCVGE-VRKLAAGGGHSAVL 167
G HT+ + G+++ +G N G + S P + E V +++AG H+A L
Sbjct: 56 GGMHTVCLSKSGQVYSFGCNDEGALGRDTSVEGSEMVPGKVELQEKVVQVSAGDSHTAAL 115
Query: 168 TD 169
TD
Sbjct: 116 TD 117
>pdb|3QHY|B Chain B, Structural, Thermodynamic And Kinetic Analysis Of The
Picomolar Binding Affinity Interaction Of The
Beta-Lactamase Inhibitor Protein- Ii (Blip-Ii) With
Class A Beta-Lactamases
pdb|3QI0|A Chain A, Structural, Thermodynamic And Kinetic Analysis Of The
Picomolar Binding Affinity Interaction Of The
Beta-Lactamase Inhibitor Protein- Ii (Blip-Ii) With
Class A Beta-Lactamases
pdb|3QI0|B Chain B, Structural, Thermodynamic And Kinetic Analysis Of The
Picomolar Binding Affinity Interaction Of The
Beta-Lactamase Inhibitor Protein- Ii (Blip-Ii) With
Class A Beta-Lactamases
pdb|3QI0|C Chain C, Structural, Thermodynamic And Kinetic Analysis Of The
Picomolar Binding Affinity Interaction Of The
Beta-Lactamase Inhibitor Protein- Ii (Blip-Ii) With
Class A Beta-Lactamases
pdb|3QI0|D Chain D, Structural, Thermodynamic And Kinetic Analysis Of The
Picomolar Binding Affinity Interaction Of The
Beta-Lactamase Inhibitor Protein- Ii (Blip-Ii) With
Class A Beta-Lactamases
pdb|3QI0|E Chain E, Structural, Thermodynamic And Kinetic Analysis Of The
Picomolar Binding Affinity Interaction Of The
Beta-Lactamase Inhibitor Protein- Ii (Blip-Ii) With
Class A Beta-Lactamases
pdb|3QI0|F Chain F, Structural, Thermodynamic And Kinetic Analysis Of The
Picomolar Binding Affinity Interaction Of The
Beta-Lactamase Inhibitor Protein- Ii (Blip-Ii) With
Class A Beta-Lactamases
Length = 282
Score = 33.9 bits (76), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 37/86 (43%), Gaps = 23/86 (26%)
Query: 47 GGVHTCALTSKGALYAWGGCQAGQLGLGPQTRSFSFIPNESDTYFRNIPILVVPNGVQLV 106
GGV+T G + AWG GQ + +P E+ + GV V
Sbjct: 148 GGVYTALAVKNGGVIAWGDNYFGQ----------TTVPAEAQS------------GVDDV 185
Query: 107 ACGHSHTLVYMRDGKIHGWGYNSYGQ 132
A G H+L ++DGK+ WG N Y Q
Sbjct: 186 AGGIFHSLA-LKDGKVIAWGDNRYKQ 210
Score = 31.6 bits (70), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 39/92 (42%), Gaps = 24/92 (26%)
Query: 41 IKDVACGGVHTCALTSKGALYAWGGCQAGQLGLGPQTRSFSFIPNESDTYFRNIPILVVP 100
+ +A G H+ AL G + AWGG + GQ + + RS
Sbjct: 65 VDAIAAGNYHSLAL-KDGEVIAWGGNEDGQTTVPAEARS--------------------- 102
Query: 101 NGVQLVACGHSHTLVYMRDGKIHGWGYNSYGQ 132
GV +A G + ++DGK+ WG +S GQ
Sbjct: 103 -GVDAIAAGAWASYA-LKDGKVIAWGDDSDGQ 132
Score = 30.4 bits (67), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 38/92 (41%), Gaps = 24/92 (26%)
Query: 41 IKDVACGGVHTCALTSKGALYAWGGCQAGQLGLGPQTRSFSFIPNESDTYFRNIPILVVP 100
+ +A G H AL G + WG GQL + T+S
Sbjct: 26 VDAIAGGYFHGLALKG-GKVLGWGANLNGQLTMPAATQS--------------------- 63
Query: 101 NGVQLVACGHSHTLVYMRDGKIHGWGYNSYGQ 132
GV +A G+ H+L ++DG++ WG N GQ
Sbjct: 64 -GVDAIAAGNYHSLA-LKDGEVIAWGGNEDGQ 93
Score = 29.3 bits (64), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 32/69 (46%), Gaps = 12/69 (17%)
Query: 101 NGVQLVACGHSHTLVYMRDGKIHGWGYNSYGQAANEKSTYAWYPSPVDWCVGEVRKLAAG 160
+GV +A G+ H L ++ GK+ GWG N GQ +T + V +AAG
Sbjct: 24 SGVDAIAGGYFHGLA-LKGGKVLGWGANLNGQLTMPAATQS-----------GVDAIAAG 71
Query: 161 GGHSAVLTD 169
HS L D
Sbjct: 72 NYHSLALKD 80
>pdb|1JTD|B Chain B, Crystal Structure Of Beta-Lactamase Inhibitor Protein-Ii
In Complex With Tem-1 Beta-Lactamase
Length = 273
Score = 33.9 bits (76), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 37/86 (43%), Gaps = 23/86 (26%)
Query: 47 GGVHTCALTSKGALYAWGGCQAGQLGLGPQTRSFSFIPNESDTYFRNIPILVVPNGVQLV 106
GGV+T G + AWG GQ + +P E+ + GV V
Sbjct: 150 GGVYTALAVKNGGVIAWGDNYFGQ----------TTVPAEAQS------------GVDDV 187
Query: 107 ACGHSHTLVYMRDGKIHGWGYNSYGQ 132
A G H+L ++DGK+ WG N Y Q
Sbjct: 188 AGGIFHSLA-LKDGKVIAWGDNRYKQ 212
Score = 31.6 bits (70), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 39/92 (42%), Gaps = 24/92 (26%)
Query: 41 IKDVACGGVHTCALTSKGALYAWGGCQAGQLGLGPQTRSFSFIPNESDTYFRNIPILVVP 100
+ +A G H+ AL G + AWGG + GQ + + RS
Sbjct: 67 VDAIAAGNYHSLAL-KDGEVIAWGGNEDGQTTVPAEARS--------------------- 104
Query: 101 NGVQLVACGHSHTLVYMRDGKIHGWGYNSYGQ 132
GV +A G + ++DGK+ WG +S GQ
Sbjct: 105 -GVDAIAAGAWASYA-LKDGKVIAWGDDSDGQ 134
Score = 30.4 bits (67), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 38/92 (41%), Gaps = 24/92 (26%)
Query: 41 IKDVACGGVHTCALTSKGALYAWGGCQAGQLGLGPQTRSFSFIPNESDTYFRNIPILVVP 100
+ +A G H AL G + WG GQL + T+S
Sbjct: 28 VDAIAGGYFHGLALKG-GKVLGWGANLNGQLTMPAATQS--------------------- 65
Query: 101 NGVQLVACGHSHTLVYMRDGKIHGWGYNSYGQ 132
GV +A G+ H+L ++DG++ WG N GQ
Sbjct: 66 -GVDAIAAGNYHSLA-LKDGEVIAWGGNEDGQ 95
Score = 29.3 bits (64), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 32/69 (46%), Gaps = 12/69 (17%)
Query: 101 NGVQLVACGHSHTLVYMRDGKIHGWGYNSYGQAANEKSTYAWYPSPVDWCVGEVRKLAAG 160
+GV +A G+ H L ++ GK+ GWG N GQ +T + V +AAG
Sbjct: 26 SGVDAIAGGYFHGLA-LKGGKVLGWGANLNGQLTMPAATQS-----------GVDAIAAG 73
Query: 161 GGHSAVLTD 169
HS L D
Sbjct: 74 NYHSLALKD 82
>pdb|2XBO|1 Chain 1, Equine Rhinitis A Virus In Complex With Its Sialic Acid
Receptor
Length = 248
Score = 27.3 bits (59), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
Query: 102 GVQLVACGHSHTLVYMRDGKIHGWGYNSYGQAANEKSTYAWYP 144
G + ACG S + Y ++ YN +G EK+TY W P
Sbjct: 148 GSRSQACGFS--VPYTSMWRVVPVFYNGWGAPTKEKATYNWLP 188
>pdb|2WFF|1 Chain 1, Equine Rhinitis A Virus
pdb|2WS9|1 Chain 1, Equine Rhinitis A Virus At Low Ph
Length = 246
Score = 27.3 bits (59), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
Query: 102 GVQLVACGHSHTLVYMRDGKIHGWGYNSYGQAANEKSTYAWYP 144
G + ACG S + Y ++ YN +G EK+TY W P
Sbjct: 148 GSRSQACGFS--VPYTSMWRVVPVFYNGWGAPTKEKATYNWLP 188
>pdb|1QFC|A Chain A, Structure Of Rat Purple Acid Phosphatase
Length = 306
Score = 27.3 bits (59), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 92 RNIPILVVPNGVQLVACGHSHTLVYMRD 119
+N+ L+ GV CGH H L Y++D
Sbjct: 203 KNLRPLLAAYGVTAYLCGHDHNLQYLQD 230
>pdb|1QHW|A Chain A, Purple Acid Phosphatase From Rat Bone
Length = 327
Score = 27.3 bits (59), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 16/28 (57%)
Query: 92 RNIPILVVPNGVQLVACGHSHTLVYMRD 119
+N+ L+ GV CGH H L Y++D
Sbjct: 224 KNLRPLLAAYGVTAYLCGHDHNLQYLQD 251
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.137 0.439
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,992,042
Number of Sequences: 62578
Number of extensions: 270636
Number of successful extensions: 673
Number of sequences better than 100.0: 19
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 504
Number of HSP's gapped (non-prelim): 73
length of query: 233
length of database: 14,973,337
effective HSP length: 96
effective length of query: 137
effective length of database: 8,965,849
effective search space: 1228321313
effective search space used: 1228321313
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)