Query 026784
Match_columns 233
No_of_seqs 213 out of 1655
Neff 9.1
Searched_HMMs 46136
Date Fri Mar 29 12:39:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026784.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026784hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1427 Uncharacterized conser 100.0 7.5E-32 1.6E-36 218.1 11.6 169 1-182 75-258 (443)
2 COG5184 ATS1 Alpha-tubulin sup 100.0 1.5E-30 3.2E-35 222.2 10.1 216 2-232 194-423 (476)
3 COG5184 ATS1 Alpha-tubulin sup 100.0 8.4E-30 1.8E-34 217.6 13.6 221 3-230 68-313 (476)
4 KOG1427 Uncharacterized conser 99.9 3.5E-27 7.6E-32 191.1 7.6 209 2-226 19-253 (443)
5 KOG1428 Inhibitor of type V ad 99.9 2.4E-23 5.2E-28 193.4 13.8 174 2-186 587-853 (3738)
6 KOG0783 Uncharacterized conser 99.9 6.9E-24 1.5E-28 190.2 7.0 163 3-182 142-311 (1267)
7 KOG0783 Uncharacterized conser 99.9 4E-21 8.6E-26 172.7 12.5 164 2-177 195-360 (1267)
8 KOG1428 Inhibitor of type V ad 99.7 1.1E-16 2.4E-21 149.9 15.4 100 38-150 766-871 (3738)
9 PF00415 RCC1: Regulator of ch 99.5 7.3E-15 1.6E-19 91.2 4.9 50 2-54 1-51 (51)
10 PF00415 RCC1: Regulator of ch 99.5 3.1E-14 6.8E-19 88.3 4.1 49 119-167 1-51 (51)
11 PF13540 RCC1_2: Regulator of 99.4 2.6E-13 5.5E-18 74.3 4.3 30 41-70 1-30 (30)
12 PF13540 RCC1_2: Regulator of 99.4 3.7E-13 7.9E-18 73.7 4.3 30 103-132 1-30 (30)
13 KOG0941 E3 ubiquitin protein l 99.1 8.9E-13 1.9E-17 119.9 -7.2 144 29-185 4-156 (850)
14 KOG0941 E3 ubiquitin protein l 98.8 9.5E-10 2.1E-14 100.5 0.4 121 100-220 13-145 (850)
15 KOG3669 Uncharacterized conser 92.0 2.6 5.6E-05 38.6 10.8 106 46-174 190-297 (705)
16 PF07569 Hira: TUP1-like enhan 90.9 0.44 9.5E-06 38.5 4.7 35 92-126 4-38 (219)
17 PF11725 AvrE: Pathogenicity f 84.8 4.7 0.0001 41.5 8.2 113 32-171 696-815 (1774)
18 KOG0943 Predicted ubiquitin-pr 83.7 0.16 3.5E-06 49.9 -2.1 117 2-132 392-509 (3015)
19 smart00706 TECPR Beta propelle 83.4 2.8 6E-05 23.0 3.7 25 101-125 8-33 (35)
20 smart00706 TECPR Beta propelle 82.6 2.7 5.9E-05 23.0 3.5 24 40-63 9-33 (35)
21 KOG3669 Uncharacterized conser 81.3 23 0.0005 32.7 10.4 70 40-125 228-299 (705)
22 PF12341 DUF3639: Protein of u 79.8 5.9 0.00013 20.7 3.8 25 101-125 2-26 (27)
23 PF07569 Hira: TUP1-like enhan 74.9 20 0.00043 28.9 7.6 27 40-66 14-40 (219)
24 PF06739 SBBP: Beta-propeller 70.3 5 0.00011 22.6 2.3 18 111-128 15-32 (38)
25 KOG0943 Predicted ubiquitin-pr 68.6 14 0.0003 37.4 6.0 118 100-219 373-496 (3015)
26 PF10168 Nup88: Nuclear pore c 64.2 58 0.0013 31.3 9.3 124 50-173 34-173 (717)
27 KOG1900 Nuclear pore complex, 61.3 60 0.0013 33.0 8.9 156 1-175 97-268 (1311)
28 PF13418 Kelch_4: Galactose ox 56.4 13 0.00028 21.7 2.5 17 111-127 4-20 (49)
29 PF11725 AvrE: Pathogenicity f 51.6 70 0.0015 33.6 7.8 63 101-176 703-769 (1774)
30 PF03785 Peptidase_C25_C: Pept 50.7 27 0.00058 23.4 3.4 43 28-72 7-50 (81)
31 PLN03215 ascorbic acid mannose 42.9 1.1E+02 0.0024 26.9 7.0 62 40-126 161-225 (373)
32 PF06204 CBM_X: Putative carbo 39.2 1E+02 0.0022 19.7 4.8 30 100-129 24-53 (66)
33 PF03785 Peptidase_C25_C: Pept 38.7 49 0.0011 22.2 3.2 34 100-133 15-49 (81)
34 PF13938 DUF4213: Domain of un 37.9 42 0.00092 22.6 3.0 23 36-58 9-31 (87)
35 PF07646 Kelch_2: Kelch motif; 35.9 42 0.00092 19.5 2.4 17 111-128 4-20 (49)
36 KOG1034 Transcriptional repres 35.9 75 0.0016 27.4 4.6 55 115-177 324-381 (385)
37 PF01436 NHL: NHL repeat; Int 34.4 70 0.0015 16.3 3.2 16 50-65 5-20 (28)
38 COG4257 Vgb Streptogramin lyas 32.8 2.1E+02 0.0046 24.3 6.7 104 46-180 61-168 (353)
39 PF08887 GAD-like: GAD-like do 32.7 45 0.00098 23.7 2.5 22 46-67 77-98 (109)
40 PF13854 Kelch_5: Kelch motif 30.9 59 0.0013 18.3 2.4 18 111-129 7-24 (42)
41 PF07312 DUF1459: Protein of u 30.6 33 0.00072 22.8 1.4 13 120-132 56-69 (84)
42 KOG0315 G-protein beta subunit 30.1 3.3E+02 0.0072 22.8 8.9 66 41-127 127-196 (311)
43 PF07250 Glyoxal_oxid_N: Glyox 29.4 1.8E+02 0.0039 23.9 5.9 74 44-129 114-190 (243)
44 KOG1274 WD40 repeat protein [G 28.1 2.8E+02 0.0061 27.3 7.4 60 100-172 524-583 (933)
45 KOG1408 WD40 repeat protein [F 27.1 1.7E+02 0.0037 28.2 5.7 94 43-173 137-243 (1080)
46 PF13570 PQQ_3: PQQ-like domai 26.3 1E+02 0.0023 16.9 2.9 20 45-64 18-37 (40)
47 PF02239 Cytochrom_D1: Cytochr 25.7 2.7E+02 0.0058 24.3 6.7 73 39-134 27-103 (369)
48 TIGR02658 TTQ_MADH_Hv methylam 25.0 4.7E+02 0.01 22.8 9.5 80 41-133 40-130 (352)
49 PF06462 Hyd_WA: Propeller; I 25.0 76 0.0016 17.0 2.0 14 112-125 2-15 (32)
50 COG4256 HemP Hemin uptake prot 23.0 1.1E+02 0.0024 19.2 2.6 26 46-71 34-59 (63)
51 PF13964 Kelch_6: Kelch motif 21.8 83 0.0018 18.2 2.0 18 111-129 4-21 (50)
52 PHA02146 hypothetical protein 21.0 1.4E+02 0.0031 19.4 2.9 32 106-137 23-55 (86)
53 PF05862 IceA2: Helicobacter p 20.6 2.1E+02 0.0045 17.7 3.4 26 100-125 25-50 (59)
No 1
>KOG1427 consensus Uncharacterized conserved protein, contains RCC1 domain [Function unknown]
Probab=99.97 E-value=7.5e-32 Score=218.07 Aligned_cols=169 Identities=28% Similarity=0.361 Sum_probs=139.1
Q ss_pred CCCcEEEEeCCCCCCcCCCCccCCCcccCCeEeeccCCCcEEEEEeCCceeEEEEcCCcEEEeeCCCCCccCCCCCCCCc
Q 026784 1 MHLDIYTWGLGSVGQLGHCSLQSGDKELLPRRVVALDGIFIKDVACGGVHTCALTSKGALYAWGGCQAGQLGLGPQTRSF 80 (233)
Q Consensus 1 ~~G~v~~wG~n~~GqLG~~~~~~~~~~~~p~~v~~l~~~~i~~is~G~~hs~~lt~~G~v~~wG~n~~GqlG~~~~~~~~ 80 (233)
++|++|+||.|..||||+++. .....|+.|+.|...+|++.+||++||++||++|+||+||.|.+||||.++..+..
T Consensus 75 megk~~~wGRNekGQLGhgD~---k~~e~Ptvi~gL~~~~iv~AA~GrnHTl~ltdtG~v~afGeNK~GQlGlgn~~~~v 151 (443)
T KOG1427|consen 75 MEGKCYTWGRNEKGQLGHGDM---KQRERPTVISGLSKHKIVKAAAGRNHTLVLTDTGQVLAFGENKYGQLGLGNAKNEV 151 (443)
T ss_pred cccceeecccCccCccCccch---hhccCCchhhhhhhhhHHHHhhccCcEEEEecCCcEEEeccccccccccccccccc
Confidence 689999999999999999965 56778999999999999999999999999999999999999999999999876641
Q ss_pred ccCCCCCCccccccCeeecCCCeEEEecCCceEEEEEcCCcEEEeeCCCCCCCCCCCCC--------------ccccCee
Q 026784 81 SFIPNESDTYFRNIPILVVPNGVQLVACGHSHTLVYMRDGKIHGWGYNSYGQAANEKST--------------YAWYPSP 146 (233)
Q Consensus 81 ~~~~~~~~~~~~~~p~~~~~~~i~~i~~G~~hs~~L~~~G~v~~wG~n~~gqLg~~~~~--------------~~~~p~~ 146 (233)
.. ..|.-+....|..|+||.+|++.|+..+.+..+|.-.|||||++... .+..|..
T Consensus 152 ~s----------~~~~~~~~~~v~~v~cga~ftv~l~~~~si~t~glp~ygqlgh~td~~~~~~~~~~~~~~e~~pr~~~ 221 (443)
T KOG1427|consen 152 ES----------TPLPCVVSDEVTNVACGADFTVWLSSTESILTAGLPQYGQLGHGTDNEFNMKDSSVRLAYEAQPRPKA 221 (443)
T ss_pred cc----------CCCccccCccceeeccccceEEEeecccceeecCCccccccccCcchhhccccccceeeeecCCCccc
Confidence 11 11112235679999999999999999999999999999999997432 1223444
Q ss_pred ccCCCC-CEEEEeccCCceEEEEcCCCceeeEEeeec
Q 026784 147 VDWCVG-EVRKLAAGGGHSAVLTDACSLKELCEFRLA 182 (233)
Q Consensus 147 v~~~~~-~i~~i~~G~~hs~~l~~~g~v~~~g~~g~~ 182 (233)
|..+.. .|++++||.+|++|++++.+||.||-.|.+
T Consensus 222 i~~~dgvqiv~~acg~nhtvavd~nkrVysWGFGGyG 258 (443)
T KOG1427|consen 222 IASLDGVQIVKVACGTNHTVAVDKNKRVYSWGFGGYG 258 (443)
T ss_pred cccccceeeEEEeccCcceeeecCCccEEEecccccc
Confidence 444444 799999999999999999999665544444
No 2
>COG5184 ATS1 Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton]
Probab=99.97 E-value=1.5e-30 Score=222.23 Aligned_cols=216 Identities=25% Similarity=0.382 Sum_probs=159.8
Q ss_pred CCcEEEEeCCCCCCcCCCCccC-CC--cccCCeEeeccCCCcEEEEEeCCceeEEEEcCCcEEEeeCCCCCccCCCCCCC
Q 026784 2 HLDIYTWGLGSVGQLGHCSLQS-GD--KELLPRRVVALDGIFIKDVACGGVHTCALTSKGALYAWGGCQAGQLGLGPQTR 78 (233)
Q Consensus 2 ~G~v~~wG~n~~GqLG~~~~~~-~~--~~~~p~~v~~l~~~~i~~is~G~~hs~~lt~~G~v~~wG~n~~GqlG~~~~~~ 78 (233)
+|+||+||.+..+-++.+.... .. ...+|..+. ...|+++++|.+|.++|+.+|+||+||+|..||||....++
T Consensus 194 ~G~V~~~gt~r~~e~~~g~~~~s~k~~~~~~p~~v~---~~~i~qla~G~dh~i~lt~~G~vy~~Gs~qkgqlG~~~~e~ 270 (476)
T COG5184 194 DGRVYSWGTFRCGELGQGSYKNSQKTSIQFTPLKVP---KKAIVQLAAGADHLIALTNEGKVYGWGSNQKGQLGRPTSER 270 (476)
T ss_pred CCcEEEecCccccccccccccccccceeeeeeeecC---chheeeeccCCceEEEEecCCcEEEecCCcccccCCchhhh
Confidence 7999999999999998884332 12 234555554 34699999999999999999999999999999999987766
Q ss_pred CcccCCCCCCccccccCeeecCCCeEEEecCCceEEEEEcCCcEEEeeCCCCCCCCCCCC----CccccCeeccCCCC-C
Q 026784 79 SFSFIPNESDTYFRNIPILVVPNGVQLVACGHSHTLVYMRDGKIHGWGYNSYGQAANEKS----TYAWYPSPVDWCVG-E 153 (233)
Q Consensus 79 ~~~~~~~~~~~~~~~~p~~~~~~~i~~i~~G~~hs~~L~~~G~v~~wG~n~~gqLg~~~~----~~~~~p~~v~~~~~-~ 153 (233)
.-.+ ..+|.......|+.|+||.+|++||+++|++|+||.|.+||||.+.. .....|.....+.. .
T Consensus 271 ~~~~---------~lv~~~f~i~~i~~vacG~~h~~al~~~G~i~a~G~n~fgqlg~~~~~~~~a~~tk~~~~~~~~~~~ 341 (476)
T COG5184 271 LKLV---------VLVGDPFAIRNIKYVACGKDHSLALDEDGEIYAWGVNIFGQLGAGSDGEIGALTTKPNYKQLLSGVT 341 (476)
T ss_pred cccc---------cccCChhhhhhhhhcccCcceEEEEcCCCeEEEeccchhcccccCcccccceeeccccccccCCCce
Confidence 4211 22233323345899999999999999999999999999999999822 12223333332332 4
Q ss_pred EEEEeccCCceEEEEcCCCceeeEEeeeccccccCCCcchhh---hhhhcC--cHHHHHHHHHHHHhh-hcCCccCCccc
Q 026784 154 VRKLAAGGGHSAVLTDACSLKELCEFRLAESVTLSNASEIED---VASRTG--SEALARLCERLREHL-LHGDEFDCDDD 227 (233)
Q Consensus 154 i~~i~~G~~hs~~l~~~g~v~~~g~~g~~~~~~~~~~~~~~~---~~~~~~--~~~~~~~cg~~~~~~-~~~~~~~~~~~ 227 (233)
|.+|++|..|+++|+.+|.+ +.+|.++..++..++.+.. ...+.. .....+.|+....++ .++++.|+||+
T Consensus 342 i~~is~ge~H~l~L~~~G~l---~a~Gr~~~~qlg~~~~~~~~~~~~~~ls~~~~~~~v~~gt~~~~~~t~~gsvy~wG~ 418 (476)
T COG5184 342 ICSISAGESHSLILRKDGTL---YAFGRGDRGQLGIQEEITIDVSTPTKLSVAIKLEQVACGTHHNIARTDDGSVYSWGW 418 (476)
T ss_pred EEEEecCcceEEEEecCceE---EEecCCccccccCcccceeecCCccccccccceEEEEecCccceeeccCCceEEecC
Confidence 89999999999999999988 6677777677666652211 111111 124457899999999 55669999999
Q ss_pred ccCCC
Q 026784 228 TRNGN 232 (233)
Q Consensus 228 ~~~~~ 232 (233)
.||||
T Consensus 419 ge~gn 423 (476)
T COG5184 419 GEHGN 423 (476)
T ss_pred chhhh
Confidence 99987
No 3
>COG5184 ATS1 Alpha-tubulin suppressor and related RCC1 domain-containing proteins [Cell division and chromosome partitioning / Cytoskeleton]
Probab=99.97 E-value=8.4e-30 Score=217.59 Aligned_cols=221 Identities=22% Similarity=0.319 Sum_probs=160.2
Q ss_pred CcEEEEeCCCCCCcCCCCccCCCcccCCeEeecc--CCCcEEEEEeCCceeEEEEcCCcEEEeeCCCCCccCCCCCCC--
Q 026784 3 LDIYTWGLGSVGQLGHCSLQSGDKELLPRRVVAL--DGIFIKDVACGGVHTCALTSKGALYAWGGCQAGQLGLGPQTR-- 78 (233)
Q Consensus 3 G~v~~wG~n~~GqLG~~~~~~~~~~~~p~~v~~l--~~~~i~~is~G~~hs~~lt~~G~v~~wG~n~~GqlG~~~~~~-- 78 (233)
..||+||+|...|||++... .....|++.+.. +...|++++||..|+++|+.||+||+||.|..|+||.....+
T Consensus 68 ~~v~~~Gsn~~~eLGlg~de--~~~~~P~~~~~~~~d~~~i~~~acGg~hsl~ld~Dg~lyswG~N~~G~Lgr~~~~~~~ 145 (476)
T COG5184 68 ASVYSWGSNGMNELGLGNDE--TKVDRPQLNPFGRIDKASIIKIACGGNHSLGLDHDGNLYSWGDNDDGALGRDIHKDIC 145 (476)
T ss_pred eeeEEEecCcceeeccCCch--hcccCceecCcccccceeeEEeecCCceEEeecCCCCEEEeccCcccccccccccccc
Confidence 57999999999999999864 336788888876 567899999999999999999999999999999999877200
Q ss_pred -----CcccCCCCCCccccccCe---eecCCCeEEEecCCceEEEEEcCCcEEEeeCCCCCCCCCCCCC------ccccC
Q 026784 79 -----SFSFIPNESDTYFRNIPI---LVVPNGVQLVACGHSHTLVYMRDGKIHGWGYNSYGQAANEKST------YAWYP 144 (233)
Q Consensus 79 -----~~~~~~~~~~~~~~~~p~---~~~~~~i~~i~~G~~hs~~L~~~G~v~~wG~n~~gqLg~~~~~------~~~~p 144 (233)
...+-+...+..+..+|. .....++++++||++++++|+++|+||+||.+..+.++.+... .+.+|
T Consensus 146 ~~~~~~~~~~~~~~~~tP~~v~~~s~~~s~~~vv~l~cg~e~svil~~~G~V~~~gt~r~~e~~~g~~~~s~k~~~~~~p 225 (476)
T COG5184 146 DQNNDIIDFDDYELESTPFKVPGGSSAKSHLRVVKLACGWEISVILTADGRVYSWGTFRCGELGQGSYKNSQKTSIQFTP 225 (476)
T ss_pred cccccccccchhhcccCCceeeccccccCChheEEeecCCceEEEEccCCcEEEecCccccccccccccccccceeeeee
Confidence 000111111222233332 1124589999999999999999999999999999999888432 23455
Q ss_pred eeccCCCCCEEEEeccCCceEEEEcCCCceeeEEeeeccccccCCCcc-----hhhhhhhcCcHH-HHHHHHHHHHhhhc
Q 026784 145 SPVDWCVGEVRKLAAGGGHSAVLTDACSLKELCEFRLAESVTLSNASE-----IEDVASRTGSEA-LARLCERLREHLLH 218 (233)
Q Consensus 145 ~~v~~~~~~i~~i~~G~~hs~~l~~~g~v~~~g~~g~~~~~~~~~~~~-----~~~~~~~~~~~~-~~~~cg~~~~~~~~ 218 (233)
..++ +..|+++++|.+|.++|+++|++|. ||.++.++++.++. +..+...+..+. ..+.||..+...++
T Consensus 226 ~~v~--~~~i~qla~G~dh~i~lt~~G~vy~---~Gs~qkgqlG~~~~e~~~~~~lv~~~f~i~~i~~vacG~~h~~al~ 300 (476)
T COG5184 226 LKVP--KKAIVQLAAGADHLIALTNEGKVYG---WGSNQKGQLGRPTSERLKLVVLVGDPFAIRNIKYVACGKDHSLALD 300 (476)
T ss_pred eecC--chheeeeccCCceEEEEecCCcEEE---ecCCcccccCCchhhhcccccccCChhhhhhhhhcccCcceEEEEc
Confidence 5554 5589999999999999999999964 45555555554432 222222222222 34779998888755
Q ss_pred -CCccCCcccccC
Q 026784 219 -GDEFDCDDDTRN 230 (233)
Q Consensus 219 -~~~~~~~~~~~~ 230 (233)
.+++|++|.+--
T Consensus 301 ~~G~i~a~G~n~f 313 (476)
T COG5184 301 EDGEIYAWGVNIF 313 (476)
T ss_pred CCCeEEEeccchh
Confidence 478999988743
No 4
>KOG1427 consensus Uncharacterized conserved protein, contains RCC1 domain [Function unknown]
Probab=99.94 E-value=3.5e-27 Score=191.07 Aligned_cols=209 Identities=22% Similarity=0.288 Sum_probs=161.1
Q ss_pred CCcEEEEeCCCCCCcCCCCccCCCcccCCeEeeccCCCcEEEEEeC--CceeEEEEcCCcEEEeeCCCCCccCCCCCCCC
Q 026784 2 HLDIYTWGLGSVGQLGHCSLQSGDKELLPRRVVALDGIFIKDVACG--GVHTCALTSKGALYAWGGCQAGQLGLGPQTRS 79 (233)
Q Consensus 2 ~G~v~~wG~n~~GqLG~~~~~~~~~~~~p~~v~~l~~~~i~~is~G--~~hs~~lt~~G~v~~wG~n~~GqlG~~~~~~~ 79 (233)
.|++.-+|.-..-+.|.-+.........|+++..+.+++|..|+.| ..|+++|+-+|++|+||.|..||||+++....
T Consensus 19 ~g~ml~~g~v~wd~tgkRd~~~~~NL~sphR~~~l~gv~iR~VasG~~aaH~vli~megk~~~wGRNekGQLGhgD~k~~ 98 (443)
T KOG1427|consen 19 GGEMLFCGAVAWDITGKRDGAMEGNLVSPHRLRPLVGVNIRFVASGCAAAHCVLIDMEGKCYTWGRNEKGQLGHGDMKQR 98 (443)
T ss_pred CccEEEeccchhhhhcccccccccccccceeccccccceEEEEecccchhhEEEEecccceeecccCccCccCccchhhc
Confidence 4777778877777776554443446678999999999999999887 68999999999999999999999999965443
Q ss_pred cccCCCCCCccccccCeee---cCCCeEEEecCCceEEEEEcCCcEEEeeCCCCCCCCCCCCC-ccccCeeccCCCCCEE
Q 026784 80 FSFIPNESDTYFRNIPILV---VPNGVQLVACGHSHTLVYMRDGKIHGWGYNSYGQAANEKST-YAWYPSPVDWCVGEVR 155 (233)
Q Consensus 80 ~~~~~~~~~~~~~~~p~~~---~~~~i~~i~~G~~hs~~L~~~G~v~~wG~n~~gqLg~~~~~-~~~~p~~v~~~~~~i~ 155 (233)
..|..+ ...+|++.+||++|+++|+++|+||.||.|.+||||+++.. .+..|.++-.-.++|+
T Consensus 99 -------------e~Ptvi~gL~~~~iv~AA~GrnHTl~ltdtG~v~afGeNK~GQlGlgn~~~~v~s~~~~~~~~~~v~ 165 (443)
T KOG1427|consen 99 -------------ERPTVISGLSKHKIVKAAAGRNHTLVLTDTGQVLAFGENKYGQLGLGNAKNEVESTPLPCVVSDEVT 165 (443)
T ss_pred -------------cCCchhhhhhhhhHHHHhhccCcEEEEecCCcEEEecccccccccccccccccccCCCccccCccce
Confidence 233333 35789999999999999999999999999999999999863 3444444444455899
Q ss_pred EEeccCCceEEEEcCCCceeeEEeeeccccccCCCc-------------------chhhhhhhcCcHHHHHHHHHHHHhh
Q 026784 156 KLAAGGGHSAVLTDACSLKELCEFRLAESVTLSNAS-------------------EIEDVASRTGSEALARLCERLREHL 216 (233)
Q Consensus 156 ~i~~G~~hs~~l~~~g~v~~~g~~g~~~~~~~~~~~-------------------~~~~~~~~~~~~~~~~~cg~~~~~~ 216 (233)
.|+||.+|++.|+..+.+ -.+|+.+.++++..+ +...|+...+..++.++||.-+++.
T Consensus 166 ~v~cga~ftv~l~~~~si---~t~glp~ygqlgh~td~~~~~~~~~~~~~~e~~pr~~~i~~~dgvqiv~~acg~nhtva 242 (443)
T KOG1427|consen 166 NVACGADFTVWLSSTESI---LTAGLPQYGQLGHGTDNEFNMKDSSVRLAYEAQPRPKAIASLDGVQIVKVACGTNHTVA 242 (443)
T ss_pred eeccccceEEEeecccce---eecCCccccccccCcchhhccccccceeeeecCCCccccccccceeeEEEeccCcceee
Confidence 999999999999999887 555555555554433 2334556666667788999999988
Q ss_pred hcC-CccCCcc
Q 026784 217 LHG-DEFDCDD 226 (233)
Q Consensus 217 ~~~-~~~~~~~ 226 (233)
++. .-+|-||
T Consensus 243 vd~nkrVysWG 253 (443)
T KOG1427|consen 243 VDKNKRVYSWG 253 (443)
T ss_pred ecCCccEEEec
Confidence 665 4445454
No 5
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]
Probab=99.90 E-value=2.4e-23 Score=193.42 Aligned_cols=174 Identities=22% Similarity=0.326 Sum_probs=134.1
Q ss_pred CCcEEEEeCCCCCCcCCCCccCCCcccCCeEeeccCCCcEEEEEeCCceeEEEEcCCcEEEeeCCCCCccCCCCCCCC--
Q 026784 2 HLDIYTWGLGSVGQLGHCSLQSGDKELLPRRVVALDGIFIKDVACGGVHTCALTSKGALYAWGGCQAGQLGLGPQTRS-- 79 (233)
Q Consensus 2 ~G~v~~wG~n~~GqLG~~~~~~~~~~~~p~~v~~l~~~~i~~is~G~~hs~~lt~~G~v~~wG~n~~GqlG~~~~~~~-- 79 (233)
||++|..|.-. .......+.+..|++.-|.+++.|..|.++++.+|+||+||.|..+|+|.-.....
T Consensus 587 nGkifM~G~~t-----------m~~n~SSqmln~L~~~~isslAlGKsH~~av~rNG~l~T~GlNN~~QCGRVEs~sTt~ 655 (3738)
T KOG1428|consen 587 NGKIFMGGLHT-----------MRVNVSSQMLNGLDNVMISSLALGKSHGVAVTRNGHLFTWGLNNMNQCGRVESTSTTS 655 (3738)
T ss_pred CCeEEeeccee-----------EEecchHHHhhccccceeehhhccccceeEEEeCCeEEEEecCCcccccccccccccC
Confidence 67777776522 01112345677788999999999999999999999999999999999997543322
Q ss_pred ---------cc---------------------------------cCCC--------------------------------
Q 026784 80 ---------FS---------------------------------FIPN-------------------------------- 85 (233)
Q Consensus 80 ---------~~---------------------------------~~~~-------------------------------- 85 (233)
+. +.|+
T Consensus 656 s~~~s~~~e~~iCP~G~HtW~~dt~~VCa~CG~Cs~~GvaC~~~~RP~G~mC~CG~GES~C~~CG~Cr~C~e~tE~~QPG 735 (3738)
T KOG1428|consen 656 SPRHSGRQEYQICPIGEHTWLTDTPSVCAQCGLCSARGVACGRVPRPKGTMCHCGVGESTCLRCGLCRPCGEVTEPAQPG 735 (3738)
T ss_pred CcccccceeecccCCccceeecCCcchhhhcccccccccccccCCCCCCcccccCCCcccceeccccccccCcCCcCCCC
Confidence 00 0000
Q ss_pred ------------CCCccccccCeeec----CCCeEEEecCCceEEEEEcCCcEEEeeCCCCCCCCCCCCCccccCeeccC
Q 026784 86 ------------ESDTYFRNIPILVV----PNGVQLVACGHSHTLVYMRDGKIHGWGYNSYGQAANEKSTYAWYPSPVDW 149 (233)
Q Consensus 86 ------------~~~~~~~~~p~~~~----~~~i~~i~~G~~hs~~L~~~G~v~~wG~n~~gqLg~~~~~~~~~p~~v~~ 149 (233)
......++..++.. ..++++|+||..|++.|.+|++||.+|+|.+||||.++.....+|++|..
T Consensus 736 ~aqHvQ~~staa~QR~~~HPs~V~~sq~~Hdvkv~sVSCG~~HtVlL~sd~~VfTFG~~~HGQLG~GDt~Sk~~Pq~V~~ 815 (3738)
T KOG1428|consen 736 RAQHVQFSSTAAPQRSTLHPSRVILSQGPHDVKVSSVSCGNFHTVLLASDRRVFTFGSNCHGQLGVGDTLSKNTPQQVIL 815 (3738)
T ss_pred HHHhheecccccccccccCchheeeccCCcceeEEEEeccCceEEEEecCCcEEEecCCcccccCcCccccCCCcceEEc
Confidence 00000011111111 25689999999999999999999999999999999999999999999988
Q ss_pred CCC-CEEEEeccCCceEEEEcCCCceeeEEeeeccccc
Q 026784 150 CVG-EVRKLAAGGGHSAVLTDACSLKELCEFRLAESVT 186 (233)
Q Consensus 150 ~~~-~i~~i~~G~~hs~~l~~~g~v~~~g~~g~~~~~~ 186 (233)
+.+ .+++|++|++|++++..||+|+.+|.|++|+...
T Consensus 816 ~~~t~~vQVaAGSNHT~l~~~DGsVFTFGaF~KGQL~R 853 (3738)
T KOG1428|consen 816 PSDTVIVQVAAGSNHTILRANDGSVFTFGAFGKGQLAR 853 (3738)
T ss_pred CCCCceEEEecCCCceEEEecCCcEEEeccccCccccC
Confidence 777 8999999999999999999999999999887543
No 6
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]
Probab=99.89 E-value=6.9e-24 Score=190.24 Aligned_cols=163 Identities=28% Similarity=0.471 Sum_probs=132.6
Q ss_pred CcEEEEeCCCCCCcCCCCccCCCcccCCeEeeccC--CCcEEEEEeCCceeEEEEcCCcEEEeeCCCCCccCCCCCCCCc
Q 026784 3 LDIYTWGLGSVGQLGHCSLQSGDKELLPRRVVALD--GIFIKDVACGGVHTCALTSKGALYAWGGCQAGQLGLGPQTRSF 80 (233)
Q Consensus 3 G~v~~wG~n~~GqLG~~~~~~~~~~~~p~~v~~l~--~~~i~~is~G~~hs~~lt~~G~v~~wG~n~~GqlG~~~~~~~~ 80 (233)
..||+||.|..--||+|+. .....|..|..|. +.-+.+|+.+..|+++|++.|+||+||-+..|.||+|.....
T Consensus 142 ndvy~wG~N~N~tLGign~---~~~~~Pe~Vdlf~~Sg~~~~qV~l~kfHSvfl~~kgqvY~cGhG~GGRlG~gdeq~~- 217 (1267)
T KOG0783|consen 142 NDVYGWGTNVNNTLGIGNG---KEPSSPERVDLFKTSGQLFSQVQLSKFHSVFLTEKGQVYVCGHGAGGRLGFGDEQYN- 217 (1267)
T ss_pred cceeEecccccccccccCC---CCCCChHHhHHHHhccHHHHHHHHhhceeeEecCCCcEEEeccCCCCccCcCccccc-
Confidence 5799999999999999984 5677899988775 666889999999999999999999999999999999965543
Q ss_pred ccCCCCCCccccccCeeecCCCeEEEecCCceEEEEEcCCcEEEeeCCCCCCCCCCCC-CccccCeeccCCC----CCEE
Q 026784 81 SFIPNESDTYFRNIPILVVPNGVQLVACGHSHTLVYMRDGKIHGWGYNSYGQAANEKS-TYAWYPSPVDWCV----GEVR 155 (233)
Q Consensus 81 ~~~~~~~~~~~~~~p~~~~~~~i~~i~~G~~hs~~L~~~G~v~~wG~n~~gqLg~~~~-~~~~~p~~v~~~~----~~i~ 155 (233)
+.| +.+|.+ .+.+|.+|++...|+++||++|.||+||.|..+|||..+. .....|.+|.... ..|+
T Consensus 218 -~iP-------krV~gL-~gh~~~qisvs~~HslvLT~~g~Vys~GlN~~hqLG~~~~~~~~~~p~qI~a~r~kg~~~iI 288 (1267)
T KOG0783|consen 218 -FIP-------KRVPGL-IGHKVIQISVSHTHSLVLTKFGSVYSWGLNGSHQLGLSNDELKKDDPIQITARRIKGFKQII 288 (1267)
T ss_pred -ccc-------cccccc-cccceEEEEeecceeEEEeecceEEEeecCcccccCCcCchhhcCchhhhhhHhhcchhhhh
Confidence 222 233332 4689999999999999999999999999999999999765 3444565554321 1699
Q ss_pred EEeccCCceEEEEcCCCceeeEEeeec
Q 026784 156 KLAAGGGHSAVLTDACSLKELCEFRLA 182 (233)
Q Consensus 156 ~i~~G~~hs~~l~~~g~v~~~g~~g~~ 182 (233)
.|+||..|+++-++. ..|.||++
T Consensus 289 gvaAg~~hsVawt~~----~VY~wGlN 311 (1267)
T KOG0783|consen 289 GVAAGKSHSVAWTDT----DVYSWGLN 311 (1267)
T ss_pred hhhcccceeeeeecc----eEEEeccc
Confidence 999999999999984 33556654
No 7
>KOG0783 consensus Uncharacterized conserved protein, contains ankyrin and BTB/POZ domains [Function unknown]
Probab=99.86 E-value=4e-21 Score=172.70 Aligned_cols=164 Identities=23% Similarity=0.361 Sum_probs=135.3
Q ss_pred CCcEEEEeCCCCCCcCCCCccCCCcccCCeEeeccCCCcEEEEEeCCceeEEEEcCCcEEEeeCCCCCccCCCCCCCCcc
Q 026784 2 HLDIYTWGLGSVGQLGHCSLQSGDKELLPRRVVALDGIFIKDVACGGVHTCALTSKGALYAWGGCQAGQLGLGPQTRSFS 81 (233)
Q Consensus 2 ~G~v~~wG~n~~GqLG~~~~~~~~~~~~p~~v~~l~~~~i~~is~G~~hs~~lt~~G~v~~wG~n~~GqlG~~~~~~~~~ 81 (233)
.|+||+||.+.-|+||.|.. ...+.|++|+.|.+.+|.+|++...|+++||++|-||+||.|..+|||..+.....
T Consensus 195 kgqvY~cGhG~GGRlG~gde---q~~~iPkrV~gL~gh~~~qisvs~~HslvLT~~g~Vys~GlN~~hqLG~~~~~~~~- 270 (1267)
T KOG0783|consen 195 KGQVYVCGHGAGGRLGFGDE---QYNFIPKRVPGLIGHKVIQISVSHTHSLVLTKFGSVYSWGLNGSHQLGLSNDELKK- 270 (1267)
T ss_pred CCcEEEeccCCCCccCcCcc---cccccccccccccccceEEEEeecceeEEEeecceEEEeecCcccccCCcCchhhc-
Confidence 58999999999999999964 67889999999999999999999999999999999999999999999987655431
Q ss_pred cCCCCCCccccccCeeecC-CCeEEEecCCceEEEEEcCCcEEEeeCCCCCCCCCCCC-CccccCeeccCCCCCEEEEec
Q 026784 82 FIPNESDTYFRNIPILVVP-NGVQLVACGHSHTLVYMRDGKIHGWGYNSYGQAANEKS-TYAWYPSPVDWCVGEVRKLAA 159 (233)
Q Consensus 82 ~~~~~~~~~~~~~p~~~~~-~~i~~i~~G~~hs~~L~~~G~v~~wG~n~~gqLg~~~~-~~~~~p~~v~~~~~~i~~i~~ 159 (233)
.....-.+....+ ..|+-|+||..|++|-++. .||+||.|. ||||+.+. ..+.+|+.+.....+|..|+|
T Consensus 271 ------~~p~qI~a~r~kg~~~iIgvaAg~~hsVawt~~-~VY~wGlN~-GQlGi~~n~~~Vt~Pr~l~~~~~~v~~v~a 342 (1267)
T KOG0783|consen 271 ------DDPIQITARRIKGFKQIIGVAAGKSHSVAWTDT-DVYSWGLNN-GQLGISDNISVVTTPRRLAGLLSPVIHVVA 342 (1267)
T ss_pred ------CchhhhhhHhhcchhhhhhhhcccceeeeeecc-eEEEecccC-ceecCCCCCceeecchhhcccccceEEEEe
Confidence 1111111222223 3689999999999999955 699999986 99998755 567788777666669999999
Q ss_pred cCCceEEEEcCCCceeeE
Q 026784 160 GGGHSAVLTDACSLKELC 177 (233)
Q Consensus 160 G~~hs~~l~~~g~v~~~g 177 (233)
....|++++.++.++.+.
T Consensus 343 ~~~ATVc~~~~~~i~~~a 360 (1267)
T KOG0783|consen 343 TTRATVCLLQNNSIIAFA 360 (1267)
T ss_pred cCccEEEEecCCcEEEEe
Confidence 999999999999885553
No 8
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]
Probab=99.72 E-value=1.1e-16 Score=149.85 Aligned_cols=100 Identities=29% Similarity=0.489 Sum_probs=84.5
Q ss_pred CCcEEEEEeCCceeEEEEcCCcEEEeeCCCCCccCCCCCCCCcccCCCCCCccccccCeeec---CCCeEEEecCCceEE
Q 026784 38 GIFIKDVACGGVHTCALTSKGALYAWGGCQAGQLGLGPQTRSFSFIPNESDTYFRNIPILVV---PNGVQLVACGHSHTL 114 (233)
Q Consensus 38 ~~~i~~is~G~~hs~~lt~~G~v~~wG~n~~GqlG~~~~~~~~~~~~~~~~~~~~~~p~~~~---~~~i~~i~~G~~hs~ 114 (233)
++++.+|+||..|+++|.+|++||++|+|.+||||.|+.... ..|.++. ...|+||++|.+|++
T Consensus 766 dvkv~sVSCG~~HtVlL~sd~~VfTFG~~~HGQLG~GDt~Sk-------------~~Pq~V~~~~~t~~vQVaAGSNHT~ 832 (3738)
T KOG1428|consen 766 DVKVSSVSCGNFHTVLLASDRRVFTFGSNCHGQLGVGDTLSK-------------NTPQQVILPSDTVIVQVAAGSNHTI 832 (3738)
T ss_pred ceeEEEEeccCceEEEEecCCcEEEecCCcccccCcCccccC-------------CCcceEEcCCCCceEEEecCCCceE
Confidence 458999999999999999999999999999999999987664 4555543 457999999999999
Q ss_pred EEEcCCcEEEeeCCCCCCCCCCCCC---ccccCeeccCC
Q 026784 115 VYMRDGKIHGWGYNSYGQAANEKST---YAWYPSPVDWC 150 (233)
Q Consensus 115 ~L~~~G~v~~wG~n~~gqLg~~~~~---~~~~p~~v~~~ 150 (233)
.+..||.||.+|.-..|||+++... --..|.+++.+
T Consensus 833 l~~~DGsVFTFGaF~KGQL~RP~~e~~~WNA~Pe~v~~~ 871 (3738)
T KOG1428|consen 833 LRANDGSVFTFGAFGKGQLARPAGEKAGWNAIPEKVSGF 871 (3738)
T ss_pred EEecCCcEEEeccccCccccCccccccccccCCCcCCCC
Confidence 9999999999999999999986432 23357777654
No 9
>PF00415 RCC1: Regulator of chromosome condensation (RCC1) repeat; InterPro: IPR000408 The regulator of chromosome condensation (RCC1) [] is a eukaryotic protein which binds to chromatin and interacts with ran, a nuclear GTP-binding protein IPR002041 from INTERPRO, to promote the loss of bound GDP and the uptake of fresh GTP, thus acting as a guanine-nucleotide dissociation stimulator (GDS). The interaction of RCC1 with ran probably plays an important role in the regulation of gene expression. RCC1, known as PRP20 or SRM1 in yeast, pim1 in fission yeast and BJ1 in Drosophila, is a protein that contains seven tandem repeats of a domain of about 50 to 60 amino acids. As shown in the following schematic representation, the repeats make up the major part of the length of the protein. Outside the repeat region, there is just a small N-terminal domain of about 40 to 50 residues and, in the Drosophila protein only, a C-terminal domain of about 130 residues. +----+-------+-------+-------+-------+-------+-------+-------+-------------+ |N-t.|Rpt. 1 |Rpt. 2 |Rpt. 3 |Rpt. 4 |Rpt. 5 |Rpt. 6 |Rpt. 7 | C-terminal | +----+-------+-------+-------+-------+-------+-------+-------+-------------+ The RCC1-type of repeat is also found in the X-linked retinitis pigmentosa GTPase regulator []. The RCC repeats form a beta-propeller structure.; PDB: 3MVD_L 3OF7_A 1I2M_D 1A12_B 3KCI_A 4DNV_B 4DNU_A 4D9S_B 4DNW_A.
Probab=99.55 E-value=7.3e-15 Score=91.21 Aligned_cols=50 Identities=40% Similarity=0.654 Sum_probs=45.4
Q ss_pred CCcEEEEeCCCCCCcC-CCCccCCCcccCCeEeeccCCCcEEEEEeCCceeEEE
Q 026784 2 HLDIYTWGLGSVGQLG-HCSLQSGDKELLPRRVVALDGIFIKDVACGGVHTCAL 54 (233)
Q Consensus 2 ~G~v~~wG~n~~GqLG-~~~~~~~~~~~~p~~v~~l~~~~i~~is~G~~hs~~l 54 (233)
||+||+||.|.+|||| .+.. .....|++++.+.+.+|++|+||.+||++|
T Consensus 1 dG~vy~wG~n~~GqLG~~~~~---~~~~~P~~v~~~~~~~i~~va~G~~ht~~l 51 (51)
T PF00415_consen 1 DGRVYSWGSNDYGQLGSGGDN---KNVSVPTKVPFLSGVRIVQVACGSDHTLAL 51 (51)
T ss_dssp TSEEEEEEEETTSTTSSSSSS---SEEEEEEEEGGGTTSEEEEEEEESSEEEEE
T ss_pred CCcEEEEECCCCCCCCCCCCC---CceeEEEEECCCCCCCEEEEEeCcceEEEC
Confidence 7999999999999999 4443 678899999999999999999999999997
No 10
>PF00415 RCC1: Regulator of chromosome condensation (RCC1) repeat; InterPro: IPR000408 The regulator of chromosome condensation (RCC1) [] is a eukaryotic protein which binds to chromatin and interacts with ran, a nuclear GTP-binding protein IPR002041 from INTERPRO, to promote the loss of bound GDP and the uptake of fresh GTP, thus acting as a guanine-nucleotide dissociation stimulator (GDS). The interaction of RCC1 with ran probably plays an important role in the regulation of gene expression. RCC1, known as PRP20 or SRM1 in yeast, pim1 in fission yeast and BJ1 in Drosophila, is a protein that contains seven tandem repeats of a domain of about 50 to 60 amino acids. As shown in the following schematic representation, the repeats make up the major part of the length of the protein. Outside the repeat region, there is just a small N-terminal domain of about 40 to 50 residues and, in the Drosophila protein only, a C-terminal domain of about 130 residues. +----+-------+-------+-------+-------+-------+-------+-------+-------------+ |N-t.|Rpt. 1 |Rpt. 2 |Rpt. 3 |Rpt. 4 |Rpt. 5 |Rpt. 6 |Rpt. 7 | C-terminal | +----+-------+-------+-------+-------+-------+-------+-------+-------------+ The RCC1-type of repeat is also found in the X-linked retinitis pigmentosa GTPase regulator []. The RCC repeats form a beta-propeller structure.; PDB: 3MVD_L 3OF7_A 1I2M_D 1A12_B 3KCI_A 4DNV_B 4DNU_A 4D9S_B 4DNW_A.
Probab=99.48 E-value=3.1e-14 Score=88.32 Aligned_cols=49 Identities=31% Similarity=0.643 Sum_probs=45.7
Q ss_pred CCcEEEeeCCCCCCCC-CCCCCccccCeeccCCCC-CEEEEeccCCceEEE
Q 026784 119 DGKIHGWGYNSYGQAA-NEKSTYAWYPSPVDWCVG-EVRKLAAGGGHSAVL 167 (233)
Q Consensus 119 ~G~v~~wG~n~~gqLg-~~~~~~~~~p~~v~~~~~-~i~~i~~G~~hs~~l 167 (233)
||+||+||.|.+|||| .........|++|+.+.. +|++|+||..||++|
T Consensus 1 dG~vy~wG~n~~GqLG~~~~~~~~~~P~~v~~~~~~~i~~va~G~~ht~~l 51 (51)
T PF00415_consen 1 DGRVYSWGSNDYGQLGSGGDNKNVSVPTKVPFLSGVRIVQVACGSDHTLAL 51 (51)
T ss_dssp TSEEEEEEEETTSTTSSSSSSSEEEEEEEEGGGTTSEEEEEEEESSEEEEE
T ss_pred CCcEEEEECCCCCCCCCCCCCCceeEEEEECCCCCCCEEEEEeCcceEEEC
Confidence 6999999999999999 788889999999998776 899999999999997
No 11
>PF13540 RCC1_2: Regulator of chromosome condensation (RCC1) repeat; PDB: 3QI0_D 1JTD_B 3QHY_B.
Probab=99.42 E-value=2.6e-13 Score=74.32 Aligned_cols=30 Identities=57% Similarity=1.183 Sum_probs=26.2
Q ss_pred EEEEEeCCceeEEEEcCCcEEEeeCCCCCc
Q 026784 41 IKDVACGGVHTCALTSKGALYAWGGCQAGQ 70 (233)
Q Consensus 41 i~~is~G~~hs~~lt~~G~v~~wG~n~~Gq 70 (233)
|++|+||.+|+++|+++|+||+||.|.+||
T Consensus 1 V~~ia~G~~ht~al~~~g~v~~wG~n~~GQ 30 (30)
T PF13540_consen 1 VVQIACGGYHTCALTSDGEVYCWGDNNYGQ 30 (30)
T ss_dssp EEEEEEESSEEEEEE-TTEEEEEE--TTST
T ss_pred CEEEEecCCEEEEEEcCCCEEEEcCCcCCC
Confidence 789999999999999999999999999998
No 12
>PF13540 RCC1_2: Regulator of chromosome condensation (RCC1) repeat; PDB: 3QI0_D 1JTD_B 3QHY_B.
Probab=99.41 E-value=3.7e-13 Score=73.70 Aligned_cols=30 Identities=47% Similarity=0.867 Sum_probs=26.1
Q ss_pred eEEEecCCceEEEEEcCCcEEEeeCCCCCC
Q 026784 103 VQLVACGHSHTLVYMRDGKIHGWGYNSYGQ 132 (233)
Q Consensus 103 i~~i~~G~~hs~~L~~~G~v~~wG~n~~gq 132 (233)
|++|+||.+|+++|+++|+||+||.|.+||
T Consensus 1 V~~ia~G~~ht~al~~~g~v~~wG~n~~GQ 30 (30)
T PF13540_consen 1 VVQIACGGYHTCALTSDGEVYCWGDNNYGQ 30 (30)
T ss_dssp EEEEEEESSEEEEEE-TTEEEEEE--TTST
T ss_pred CEEEEecCCEEEEEEcCCCEEEEcCCcCCC
Confidence 789999999999999999999999999998
No 13
>KOG0941 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.11 E-value=8.9e-13 Score=119.93 Aligned_cols=144 Identities=26% Similarity=0.340 Sum_probs=108.6
Q ss_pred CCeEeeccCCCcEEEEEeCCceeEEEEcCCcEEEeeCCCCCccCCCCCCCCcccCCCCCCccccccCeeecCCCeEEEec
Q 026784 29 LPRRVVALDGIFIKDVACGGVHTCALTSKGALYAWGGCQAGQLGLGPQTRSFSFIPNESDTYFRNIPILVVPNGVQLVAC 108 (233)
Q Consensus 29 ~p~~v~~l~~~~i~~is~G~~hs~~lt~~G~v~~wG~n~~GqlG~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~i~~i~~ 108 (233)
.|+.+.-+...+|.+++||.+|+++++..|++|.||.|.+||+|.+.....- . +..++.+ .+.+..+|+|
T Consensus 4 ~~~~~~~l~~k~~lq~~cGn~hclal~~~g~~~~wg~~~~g~~~~~~~~~~~--~-------p~~~~sl-~g~p~a~v~~ 73 (850)
T KOG0941|consen 4 APRLVLILNYKHILQVGCGNNHCLALSCAGELFVWGMNNNGQLGRALYFPDA--K-------PEPVESL-KGVPLAQVSA 73 (850)
T ss_pred hhHHHHHHhhhhhhhhccccHHHHhhhccCCeeeccCCccchhhhhccCCCC--C-------Cccchhh-cCCcHHHHhc
Confidence 3455555555679999999999999999999999999999999998222210 0 1111211 3566889999
Q ss_pred CCceEEEEEc-------CCcEEEeeCCCCCCCCCCCCCccccCeeccCC-CCCEEEEeccCCceEEEEcC-CCceeeEEe
Q 026784 109 GHSHTLVYMR-------DGKIHGWGYNSYGQAANEKSTYAWYPSPVDWC-VGEVRKLAAGGGHSAVLTDA-CSLKELCEF 179 (233)
Q Consensus 109 G~~hs~~L~~-------~G~v~~wG~n~~gqLg~~~~~~~~~p~~v~~~-~~~i~~i~~G~~hs~~l~~~-g~v~~~g~~ 179 (233)
|..|++++.. +|.++.+|....+|+|+........|..+... ...+..|+||..|+.++... |+. +.+
T Consensus 74 g~~hs~~lS~~~~~lt~e~~~fs~Ga~~~~q~~h~~~~~~~~~~~v~e~i~~~~t~ia~~~~ht~a~v~~l~qs---f~~ 150 (850)
T KOG0941|consen 74 GEAHSFALSSHTVLLTDEGKVFSFGAGSTGQLGHSLTENEVLPLLVLELIGSRVTRIACVRGHTLAIVPRLGQS---FSF 150 (850)
T ss_pred CCCcchhhhhchhhcchhccccccCCcccccccccccccccccHHHHHHHhhhhHHHHHHHHHHHhhhhhhcce---eec
Confidence 9999887766 99999999999999999766667777766543 33899999999999887775 444 666
Q ss_pred eecccc
Q 026784 180 RLAESV 185 (233)
Q Consensus 180 g~~~~~ 185 (233)
+.+..+
T Consensus 151 ~~~~sG 156 (850)
T KOG0941|consen 151 GKGASG 156 (850)
T ss_pred ccCCCC
Confidence 665543
No 14
>KOG0941 consensus E3 ubiquitin protein ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.80 E-value=9.5e-10 Score=100.54 Aligned_cols=121 Identities=21% Similarity=0.228 Sum_probs=92.0
Q ss_pred CCCeEEEecCCceEEEEEcCCcEEEeeCCCCCCCCCCCCCccccCeeccCCCC-CEEEEeccCCceEEEEc-------CC
Q 026784 100 PNGVQLVACGHSHTLVYMRDGKIHGWGYNSYGQAANEKSTYAWYPSPVDWCVG-EVRKLAAGGGHSAVLTD-------AC 171 (233)
Q Consensus 100 ~~~i~~i~~G~~hs~~L~~~G~v~~wG~n~~gqLg~~~~~~~~~p~~v~~~~~-~i~~i~~G~~hs~~l~~-------~g 171 (233)
..+|.|++||.+|.++++..|++|.||.|.+||+|++.......|.+++.+.. +..+|+||..|+++++. .|
T Consensus 13 ~k~~lq~~cGn~hclal~~~g~~~~wg~~~~g~~~~~~~~~~~~p~~~~sl~g~p~a~v~~g~~hs~~lS~~~~~lt~e~ 92 (850)
T KOG0941|consen 13 YKHILQVGCGNNHCLALSCAGELFVWGMNNNGQLGRALYFPDAKPEPVESLKGVPLAQVSAGEAHSFALSSHTVLLTDEG 92 (850)
T ss_pred hhhhhhhccccHHHHhhhccCCeeeccCCccchhhhhccCCCCCCccchhhcCCcHHHHhcCCCcchhhhhchhhcchhc
Confidence 35699999999999999999999999999999999985544444888887766 89999999999999888 77
Q ss_pred CceeeEEeeeccccc--cCCCcchhhhhhhcCcHHHHHHHHH--HHHhhhcCC
Q 026784 172 SLKELCEFRLAESVT--LSNASEIEDVASRTGSEALARLCER--LREHLLHGD 220 (233)
Q Consensus 172 ~v~~~g~~g~~~~~~--~~~~~~~~~~~~~~~~~~~~~~cg~--~~~~~~~~~ 220 (233)
.+...|....++.+. ..+.......+...+.....+.|++ ........+
T Consensus 93 ~~fs~Ga~~~~q~~h~~~~~~~~~~~v~e~i~~~~t~ia~~~~ht~a~v~~l~ 145 (850)
T KOG0941|consen 93 KVFSFGAGSTGQLGHSLTENEVLPLLVLELIGSRVTRIACVRGHTLAIVPRLG 145 (850)
T ss_pred cccccCCcccccccccccccccccHHHHHHHhhhhHHHHHHHHHHHhhhhhhc
Confidence 774444444444433 3334445567888889899999988 444443333
No 15
>KOG3669 consensus Uncharacterized conserved protein, contains dysferlin, TECPR and PH domains [General function prediction only]
Probab=91.97 E-value=2.6 Score=38.57 Aligned_cols=106 Identities=17% Similarity=0.141 Sum_probs=67.5
Q ss_pred eCCceeEEEEcCCcEEEeeCCCCCccCCCCCCCCcccCCCCCCccccccCeeecCCCeEEEecCC-ceEEEEEcCCcEEE
Q 026784 46 CGGVHTCALTSKGALYAWGGCQAGQLGLGPQTRSFSFIPNESDTYFRNIPILVVPNGVQLVACGH-SHTLVYMRDGKIHG 124 (233)
Q Consensus 46 ~G~~hs~~lt~~G~v~~wG~n~~GqlG~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~i~~i~~G~-~hs~~L~~~G~v~~ 124 (233)
.|..-..||.++|++|-= .|-.-..+....... ++ ....+.+|++|. .-..+++.+|.||.
T Consensus 190 ~g~~~awAI~s~Gd~y~R----tGvs~~~P~GraW~~-----------i~---~~t~L~qISagPtg~VwAvt~nG~vf~ 251 (705)
T KOG3669|consen 190 LGDDTAWAIRSSGDLYLR----TGVSVDRPCGRAWKV-----------IC---PYTDLSQISAGPTGVVWAVTENGAVFY 251 (705)
T ss_pred CCceEEEEEecCCcEEEe----ccccCCCCCCceeee-----------cC---CCCccceEeecCcceEEEEeeCCcEEE
Confidence 567777888999998842 222222222222111 11 123589999998 77889999999864
Q ss_pred -eeCCCCCCCCCCCCCccccCeeccCCCCCEEEEeccCCceEEEEcCCCce
Q 026784 125 -WGYNSYGQAANEKSTYAWYPSPVDWCVGEVRKLAAGGGHSAVLTDACSLK 174 (233)
Q Consensus 125 -wG~n~~gqLg~~~~~~~~~p~~v~~~~~~i~~i~~G~~hs~~l~~~g~v~ 174 (233)
-|-....+.|..-. .+.+|+... .++.|+.|..-.-+|+.+|.+|
T Consensus 252 R~GVsRqNp~GdsWk-dI~tP~~a~----~~v~iSvGt~t~Waldndg~lw 297 (705)
T KOG3669|consen 252 REGVSRQNPEGDSWK-DIVTPRQAL----EPVCISVGTQTLWALDNDGNLW 297 (705)
T ss_pred EecccccCCCCchhh-hccCccccc----ceEEEEeccceEEEEecCCcEE
Confidence 46555555544322 344444432 3899999999999999999883
No 16
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=90.93 E-value=0.44 Score=38.51 Aligned_cols=35 Identities=26% Similarity=0.489 Sum_probs=31.5
Q ss_pred cccCeeecCCCeEEEecCCceEEEEEcCCcEEEee
Q 026784 92 RNIPILVVPNGVQLVACGHSHTLVYMRDGKIHGWG 126 (233)
Q Consensus 92 ~~~p~~~~~~~i~~i~~G~~hs~~L~~~G~v~~wG 126 (233)
+.+|.+..+.+++.+.|-..+-++||++|.+|+|=
T Consensus 4 rl~P~i~Lgs~~~~l~~~~~~Ll~iT~~G~l~vWn 38 (219)
T PF07569_consen 4 RLLPPIVLGSPVSFLECNGSYLLAITSSGLLYVWN 38 (219)
T ss_pred cccCcEecCCceEEEEeCCCEEEEEeCCCeEEEEE
Confidence 35688888899999999999999999999999994
No 17
>PF11725 AvrE: Pathogenicity factor; InterPro: IPR021085 This family is secreted by Gram-negative Gammaproteobacteria such as Pseudomonas syringae of tomato and Erwinia amylovora (Fire blight bacteria), amongst others. It is an essential pathogenicity factor of approximately 198 kDa. Its injection into the host-plant is dependent upon the bacterial type III or Hrp secretion system []. The family is long and carries a number of predicted functional regions, including an ERMS or endoplasmic reticulum membrane retention signal at both the C- and the N-termini, a leucine-zipper motif from residues 539-560, and a nuclear localisation signal at 1358-1361. This conserved AvrE-family of effectors is among the few that are required for full virulence of many phytopathogenic pseudomonads, erwinias and pantoeas [].
Probab=84.83 E-value=4.7 Score=41.46 Aligned_cols=113 Identities=15% Similarity=0.189 Sum_probs=75.6
Q ss_pred EeeccCCCcEEEEEe-CCceeEEEEcCCcEEEeeCCCCCccCCCCCCCCcccCCCCCCccccccCeeecCCCeEEEecCC
Q 026784 32 RVVALDGIFIKDVAC-GGVHTCALTSKGALYAWGGCQAGQLGLGPQTRSFSFIPNESDTYFRNIPILVVPNGVQLVACGH 110 (233)
Q Consensus 32 ~v~~l~~~~i~~is~-G~~hs~~lt~~G~v~~wG~n~~GqlG~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~i~~i~~G~ 110 (233)
.|+.+++..|+.++. +.++.++|+++|+|-..= .-|. +..++..-....|+.|++=.
T Consensus 696 ~l~Gl~~~~i~a~Avv~~~~fvald~qg~lt~h~--k~g~--------------------p~~l~~~gl~G~ik~l~lD~ 753 (1774)
T PF11725_consen 696 ALEGLEDRVITAFAVVNDNKFVALDDQGDLTAHQ--KPGR--------------------PVPLSRPGLSGEIKDLALDE 753 (1774)
T ss_pred cccCCCcCcceeEEEEcCCceEEeccCCcccccc--CCCC--------------------CccCCCCCCCcchhheeecc
Confidence 466677777777665 789999999999886542 1111 11222222246799999998
Q ss_pred ceE-EEEEcCCcEEE-----eeCCCCCCCCCCCCCccccCeeccCCCCCEEEEeccCCceEEEEcCC
Q 026784 111 SHT-LVYMRDGKIHG-----WGYNSYGQAANEKSTYAWYPSPVDWCVGEVRKLAAGGGHSAVLTDAC 171 (233)
Q Consensus 111 ~hs-~~L~~~G~v~~-----wG~n~~gqLg~~~~~~~~~p~~v~~~~~~i~~i~~G~~hs~~l~~~g 171 (233)
.|. .||+.+|++|. |=.+..+. .....+.|..++ ...+|..+....+|.+.+.-++
T Consensus 754 ~~nL~Alt~~G~Lf~~~k~~WQ~~~~~~----~~~~~W~~v~lP-~~~~v~~l~~~~~~~l~~~~~d 815 (1774)
T PF11725_consen 754 KQNLYALTSTGELFRLPKEAWQGNAEGD----QMAAKWQKVALP-DEQPVKSLRTNDDNHLSAQIED 815 (1774)
T ss_pred ccceeEecCCCceeecCHHHhhCcccCC----ccccCceeccCC-CCCchhhhhcCCCCceEEEecC
Confidence 875 57999999997 53333221 123456666666 3448999999999998888776
No 18
>KOG0943 consensus Predicted ubiquitin-protein ligase/hyperplastic discs protein, HECT superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=83.69 E-value=0.16 Score=49.87 Aligned_cols=117 Identities=17% Similarity=0.248 Sum_probs=72.6
Q ss_pred CCcEEEEeCCCCCCcCCCCccCCCcccCCeE-eeccCCCcEEEEEeCCceeEEEEcCCcEEEeeCCCCCccCCCCCCCCc
Q 026784 2 HLDIYTWGLGSVGQLGHCSLQSGDKELLPRR-VVALDGIFIKDVACGGVHTCALTSKGALYAWGGCQAGQLGLGPQTRSF 80 (233)
Q Consensus 2 ~G~v~~wG~n~~GqLG~~~~~~~~~~~~p~~-v~~l~~~~i~~is~G~~hs~~lt~~G~v~~wG~n~~GqlG~~~~~~~~ 80 (233)
+|++|.|-....--|-.+.... .....|.. ...+.+.+|+.+++..-..-++|++|+|-+|=+ .+|.+.....
T Consensus 392 kGelYqWaWdESEglddplai~-kn~dHPd~a~iG~hge~ii~lSanniR~si~T~nghlasWlD----EcgagV~fkL- 465 (3015)
T KOG0943|consen 392 KGELYQWAWDESEGLDDPLAIN-KNLDHPDAAFIGLHGEKIILLSANNIRASIATENGHLASWLD----ECGAGVAFKL- 465 (3015)
T ss_pred CCceeeeecccccCCCChhhcc-cCCCCCccceecccCCeeEEeecCceeeeeeecCCchhhHHh----hhhhhhhhhh-
Confidence 6999999886543333221111 12223332 334667899999999999999999999999943 2222211110
Q ss_pred ccCCCCCCccccccCeeecCCCeEEEecCCceEEEEEcCCcEEEeeCCCCCC
Q 026784 81 SFIPNESDTYFRNIPILVVPNGVQLVACGHSHTLVYMRDGKIHGWGYNSYGQ 132 (233)
Q Consensus 81 ~~~~~~~~~~~~~~p~~~~~~~i~~i~~G~~hs~~L~~~G~v~~wG~n~~gq 132 (233)
... ........++.+++-.|-..|.+|..+|..+|-||--...|
T Consensus 466 ----a~e----a~Tkieed~~maVqd~~~adhlaAf~~dniihWcGiVPf~e 509 (3015)
T KOG0943|consen 466 ----AHE----AQTKIEEDGEMAVQDHCCADHLAAFLEDNIIHWCGIVPFSE 509 (3015)
T ss_pred ----hhh----hhhhhhhhhHHHHHHHHHHHHHHHHhhhceeeEEeeeeehh
Confidence 000 00001113566888889999999999999999999654444
No 19
>smart00706 TECPR Beta propeller repeats in Physarum polycephalum tectonins, Limulus lectin L-6 and animal hypothetical proteins.
Probab=83.45 E-value=2.8 Score=22.98 Aligned_cols=25 Identities=20% Similarity=0.211 Sum_probs=21.9
Q ss_pred CCeEEEecCC-ceEEEEEcCCcEEEe
Q 026784 101 NGVQLVACGH-SHTLVYMRDGKIHGW 125 (233)
Q Consensus 101 ~~i~~i~~G~-~hs~~L~~~G~v~~w 125 (233)
..+++|++|. ....+++.+|++|..
T Consensus 8 g~l~~isvg~~~~vW~V~~~g~i~~r 33 (35)
T smart00706 8 GELVQVSVGPSDTVWAVNSDGNIYRR 33 (35)
T ss_pred CCEEEEEECCCCeEEEEcCCCCEEEE
Confidence 5699999999 889999999999864
No 20
>smart00706 TECPR Beta propeller repeats in Physarum polycephalum tectonins, Limulus lectin L-6 and animal hypothetical proteins.
Probab=82.60 E-value=2.7 Score=23.00 Aligned_cols=24 Identities=25% Similarity=0.355 Sum_probs=21.3
Q ss_pred cEEEEEeCC-ceeEEEEcCCcEEEe
Q 026784 40 FIKDVACGG-VHTCALTSKGALYAW 63 (233)
Q Consensus 40 ~i~~is~G~-~hs~~lt~~G~v~~w 63 (233)
.+++|++|. ....+++.+|.+|..
T Consensus 9 ~l~~isvg~~~~vW~V~~~g~i~~r 33 (35)
T smart00706 9 ELVQVSVGPSDTVWAVNSDGNIYRR 33 (35)
T ss_pred CEEEEEECCCCeEEEEcCCCCEEEE
Confidence 699999999 889999999999853
No 21
>KOG3669 consensus Uncharacterized conserved protein, contains dysferlin, TECPR and PH domains [General function prediction only]
Probab=81.26 E-value=23 Score=32.69 Aligned_cols=70 Identities=16% Similarity=0.098 Sum_probs=48.4
Q ss_pred cEEEEEeCC-ceeEEEEcCCcEEE-eeCCCCCccCCCCCCCCcccCCCCCCccccccCeeecCCCeEEEecCCceEEEEE
Q 026784 40 FIKDVACGG-VHTCALTSKGALYA-WGGCQAGQLGLGPQTRSFSFIPNESDTYFRNIPILVVPNGVQLVACGHSHTLVYM 117 (233)
Q Consensus 40 ~i~~is~G~-~hs~~lt~~G~v~~-wG~n~~GqlG~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~i~~i~~G~~hs~~L~ 117 (233)
.+.+|++|. .-.-+|+.+|+||. -|-.++.+.|..=. ....|. ....++.|+.|..-.-+|+
T Consensus 228 ~L~qISagPtg~VwAvt~nG~vf~R~GVsRqNp~GdsWk--------------dI~tP~--~a~~~v~iSvGt~t~Wald 291 (705)
T KOG3669|consen 228 DLSQISAGPTGVVWAVTENGAVFYREGVSRQNPEGDSWK--------------DIVTPR--QALEPVCISVGTQTLWALD 291 (705)
T ss_pred ccceEeecCcceEEEEeeCCcEEEEecccccCCCCchhh--------------hccCcc--cccceEEEEeccceEEEEe
Confidence 489999998 77789999999874 44444444443211 011222 1223899999999999999
Q ss_pred cCCcEEEe
Q 026784 118 RDGKIHGW 125 (233)
Q Consensus 118 ~~G~v~~w 125 (233)
.+|++|.=
T Consensus 292 ndg~lwfr 299 (705)
T KOG3669|consen 292 NDGNLWFR 299 (705)
T ss_pred cCCcEEEE
Confidence 99999864
No 22
>PF12341 DUF3639: Protein of unknown function (DUF3639) ; InterPro: IPR022100 This domain family is found in eukaryotes, and is approximately 30 amino acids in length. The family is found in association with PF00400 from PFAM. There are two completely conserved residues (E and R) that may be functionally important.
Probab=79.77 E-value=5.9 Score=20.68 Aligned_cols=25 Identities=20% Similarity=0.322 Sum_probs=21.1
Q ss_pred CCeEEEecCCceEEEEEcCCcEEEe
Q 026784 101 NGVQLVACGHSHTLVYMRDGKIHGW 125 (233)
Q Consensus 101 ~~i~~i~~G~~hs~~L~~~G~v~~w 125 (233)
+.|..|++|....++.|+.+-|-.|
T Consensus 2 E~i~aia~g~~~vavaTS~~~lRif 26 (27)
T PF12341_consen 2 EEIEAIAAGDSWVAVATSAGYLRIF 26 (27)
T ss_pred ceEEEEEccCCEEEEEeCCCeEEec
Confidence 5799999999999999998876543
No 23
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=74.88 E-value=20 Score=28.90 Aligned_cols=27 Identities=33% Similarity=0.543 Sum_probs=23.9
Q ss_pred cEEEEEeCCceeEEEEcCCcEEEeeCC
Q 026784 40 FIKDVACGGVHTCALTSKGALYAWGGC 66 (233)
Q Consensus 40 ~i~~is~G~~hs~~lt~~G~v~~wG~n 66 (233)
++..+.|-..+-++||++|.+|.|=-.
T Consensus 14 ~~~~l~~~~~~Ll~iT~~G~l~vWnl~ 40 (219)
T PF07569_consen 14 PVSFLECNGSYLLAITSSGLLYVWNLK 40 (219)
T ss_pred ceEEEEeCCCEEEEEeCCCeEEEEECC
Confidence 588899999999999999999999543
No 24
>PF06739 SBBP: Beta-propeller repeat; InterPro: IPR010620 This family is related to IPR001680 from INTERPRO and is likely to also form a beta-propeller. SBBP stands for Seven Bladed Beta Propeller.
Probab=70.34 E-value=5 Score=22.63 Aligned_cols=18 Identities=22% Similarity=0.346 Sum_probs=15.5
Q ss_pred ceEEEEEcCCcEEEeeCC
Q 026784 111 SHTLVYMRDGKIHGWGYN 128 (233)
Q Consensus 111 ~hs~~L~~~G~v~~wG~n 128 (233)
-+.++++.+|++|+-|.-
T Consensus 15 ~~~IavD~~GNiYv~G~T 32 (38)
T PF06739_consen 15 GNGIAVDSNGNIYVTGYT 32 (38)
T ss_pred EEEEEECCCCCEEEEEee
Confidence 467899999999999974
No 25
>KOG0943 consensus Predicted ubiquitin-protein ligase/hyperplastic discs protein, HECT superfamily [Posttranslational modification, protein turnover, chaperones]
Probab=68.58 E-value=14 Score=37.41 Aligned_cols=118 Identities=14% Similarity=0.186 Sum_probs=71.3
Q ss_pred CCCeEEEecCCceEEEEEcCCcEEEeeCCCCCCCCCCCC--CccccC--eeccCCCCCEEEEeccCCceEEEEcCCCcee
Q 026784 100 PNGVQLVACGHSHTLVYMRDGKIHGWGYNSYGQAANEKS--TYAWYP--SPVDWCVGEVRKLAAGGGHSAVLTDACSLKE 175 (233)
Q Consensus 100 ~~~i~~i~~G~~hs~~L~~~G~v~~wG~n~~gqLg~~~~--~~~~~p--~~v~~~~~~i~~i~~G~~hs~~l~~~g~v~~ 175 (233)
..+++.|.+=.+..+||..+|++|.|-....--|...-. ....-| ..+-....+|+.+++.+-..-++|++|++-.
T Consensus 373 an~~I~I~A~s~el~AlhrkGelYqWaWdESEglddplai~kn~dHPd~a~iG~hge~ii~lSanniR~si~T~nghlas 452 (3015)
T KOG0943|consen 373 ANKFICIGALSSELLALHRKGELYQWAWDESEGLDDPLAINKNLDHPDAAFIGLHGEKIILLSANNIRASIATENGHLAS 452 (3015)
T ss_pred CCeeEEeehhHHHHHHHhhCCceeeeecccccCCCChhhcccCCCCCccceecccCCeeEEeecCceeeeeeecCCchhh
Confidence 467888888889999999999999998766544433111 112222 2333345589999999999999999999977
Q ss_pred eEE-eeeccccccCCCcchhhhhhhcCcHHHHHHH-HHHHHhhhcC
Q 026784 176 LCE-FRLAESVTLSNASEIEDVASRTGSEALARLC-ERLREHLLHG 219 (233)
Q Consensus 176 ~g~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~c-g~~~~~~~~~ 219 (233)
|-. .+.+-...+.. ..+.-....+..+++..| ..+...++.+
T Consensus 453 WlDEcgagV~fkLa~--ea~Tkieed~~maVqd~~~adhlaAf~~d 496 (3015)
T KOG0943|consen 453 WLDECGAGVAFKLAH--EAQTKIEEDGEMAVQDHCCADHLAAFLED 496 (3015)
T ss_pred HHhhhhhhhhhhhhh--hhhhhhhhhhHHHHHHHHHHHHHHHHhhh
Confidence 632 23332222332 222223334444555554 4444444443
No 26
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=64.17 E-value=58 Score=31.31 Aligned_cols=124 Identities=15% Similarity=0.201 Sum_probs=59.3
Q ss_pred eeEEEEcCCcEEEeeCCCCCccCCCCCCCCcccCCCCCCccccccCeeecCCCeEEEecCCce-EEEEEcCCcEEE----
Q 026784 50 HTCALTSKGALYAWGGCQAGQLGLGPQTRSFSFIPNESDTYFRNIPILVVPNGVQLVACGHSH-TLVYMRDGKIHG---- 124 (233)
Q Consensus 50 hs~~lt~~G~v~~wG~n~~GqlG~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~i~~i~~G~~h-s~~L~~~G~v~~---- 124 (233)
..++...++.||.|=.+..--+...-...................|.......|.+|...... -+||.-.-.|++
T Consensus 34 rNLl~~~d~~L~vWd~~e~~l~~~nlr~~~~~~~~~~~~~~q~L~~~~~~~f~v~~i~~n~~g~~lal~G~~~v~V~~LP 113 (717)
T PF10168_consen 34 RNLLACRDGDLFVWDSSECCLLTVNLRSLESDAEGPAKSSYQKLLPSNPPLFEVHQISLNPTGSLLALVGPRGVVVLELP 113 (717)
T ss_pred eeeEEEeCCEEEEEECCCCEEEEEeeccccccccCccccCcceeecCCCCceeEEEEEECCCCCEEEEEcCCcEEEEEec
Confidence 455666689999998766443222111000000000001111122222223557777765433 344444433443
Q ss_pred --eeCCCCCCCCCCCCCccccCeeccCCC----CCEEEE-----eccCCceEEEEcCCCc
Q 026784 125 --WGYNSYGQAANEKSTYAWYPSPVDWCV----GEVRKL-----AAGGGHSAVLTDACSL 173 (233)
Q Consensus 125 --wG~n~~gqLg~~~~~~~~~p~~v~~~~----~~i~~i-----~~G~~hs~~l~~~g~v 173 (233)
||.+.+-+.|-........|.--.++. ..|+++ +.-..|-++|++|+.+
T Consensus 114 ~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~l~vLtsdn~l 173 (717)
T PF10168_consen 114 RRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSHLVVLTSDNTL 173 (717)
T ss_pred cccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCeEEEEecCCEE
Confidence 887765554444333333332222211 156666 3446899999999887
No 27
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=61.27 E-value=60 Score=33.01 Aligned_cols=156 Identities=13% Similarity=0.180 Sum_probs=77.8
Q ss_pred CCCcEEEEeCCCCCCcCCCCccCCCcccCCeEeeccCCCcEEEEEeCCceeEEEEcCCcEEEeeCCCC-CccCCCCCCCC
Q 026784 1 MHLDIYTWGLGSVGQLGHCSLQSGDKELLPRRVVALDGIFIKDVACGGVHTCALTSKGALYAWGGCQA-GQLGLGPQTRS 79 (233)
Q Consensus 1 ~~G~v~~wG~n~~GqLG~~~~~~~~~~~~p~~v~~l~~~~i~~is~G~~hs~~lt~~G~v~~wG~n~~-GqlG~~~~~~~ 79 (233)
.|.++|.|=.++.+++-.-+..+ .....-..+..=+++.+..| .|-++|..-=+|+-.|--.. .+.+......
T Consensus 97 iDn~L~lWny~~~~e~~~~d~~s-htIl~V~LvkPkpgvFv~~I----qhlLvvaT~~ei~ilgV~~~~~~~~~~~f~~- 170 (1311)
T KOG1900|consen 97 IDNNLFLWNYESDNELAEYDGLS-HTILKVGLVKPKPGVFVPEI----QHLLVVATPVEIVILGVSFDEFTGELSIFNT- 170 (1311)
T ss_pred eCCeEEEEEcCCCCccccccchh-hhheeeeeecCCCCcchhhh----heeEEecccceEEEEEEEeccccCccccccc-
Confidence 47899999999988876543322 22222223332234444444 58899999999998884221 1111111111
Q ss_pred cccCCCCCCccccccCeeecCCCeEEEecCCceEEEEE-cCCcEEEe----eCCCCCCC----CCC-CCCccccCeeccC
Q 026784 80 FSFIPNESDTYFRNIPILVVPNGVQLVACGHSHTLVYM-RDGKIHGW----GYNSYGQA----ANE-KSTYAWYPSPVDW 149 (233)
Q Consensus 80 ~~~~~~~~~~~~~~~p~~~~~~~i~~i~~G~~hs~~L~-~~G~v~~w----G~n~~gqL----g~~-~~~~~~~p~~v~~ 149 (233)
.+...+.+..|..|++-.+==++++ ++|.||-. +++.+++- .+. ..-....|..++.
T Consensus 171 -------------~~~i~~dg~~V~~I~~t~nGRIF~~G~dg~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~ 237 (1311)
T KOG1900|consen 171 -------------SFKISVDGVSVNCITYTENGRIFFAGRDGNLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSV 237 (1311)
T ss_pred -------------ceeeecCCceEEEEEeccCCcEEEeecCCCEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcC
Confidence 1111123444555554333333333 44444422 12222221 111 1112335665444
Q ss_pred C---CCCEEEEeccCCceEEE--EcCCCcee
Q 026784 150 C---VGEVRKLAAGGGHSAVL--TDACSLKE 175 (233)
Q Consensus 150 ~---~~~i~~i~~G~~hs~~l--~~~g~v~~ 175 (233)
+ .++|.+|+......+.. ++.|.+..
T Consensus 238 ~~~~~dpI~qi~ID~SR~IlY~lsek~~v~~ 268 (1311)
T KOG1900|consen 238 PGSSKDPIRQITIDNSRNILYVLSEKGTVSA 268 (1311)
T ss_pred CCCCCCcceeeEeccccceeeeeccCceEEE
Confidence 4 44899999999877654 45566633
No 28
>PF13418 Kelch_4: Galactose oxidase, central domain; PDB: 2UVK_B.
Probab=56.44 E-value=13 Score=21.70 Aligned_cols=17 Identities=29% Similarity=0.386 Sum_probs=11.5
Q ss_pred ceEEEEEcCCcEEEeeC
Q 026784 111 SHTLVYMRDGKIHGWGY 127 (233)
Q Consensus 111 ~hs~~L~~~G~v~~wG~ 127 (233)
.|+++...++++|++|=
T Consensus 4 ~h~~~~~~~~~i~v~GG 20 (49)
T PF13418_consen 4 GHSAVSIGDNSIYVFGG 20 (49)
T ss_dssp S-EEEEE-TTEEEEE--
T ss_pred eEEEEEEeCCeEEEECC
Confidence 68888887899999983
No 29
>PF11725 AvrE: Pathogenicity factor; InterPro: IPR021085 This family is secreted by Gram-negative Gammaproteobacteria such as Pseudomonas syringae of tomato and Erwinia amylovora (Fire blight bacteria), amongst others. It is an essential pathogenicity factor of approximately 198 kDa. Its injection into the host-plant is dependent upon the bacterial type III or Hrp secretion system []. The family is long and carries a number of predicted functional regions, including an ERMS or endoplasmic reticulum membrane retention signal at both the C- and the N-termini, a leucine-zipper motif from residues 539-560, and a nuclear localisation signal at 1358-1361. This conserved AvrE-family of effectors is among the few that are required for full virulence of many phytopathogenic pseudomonads, erwinias and pantoeas [].
Probab=51.64 E-value=70 Score=33.58 Aligned_cols=63 Identities=19% Similarity=0.220 Sum_probs=42.6
Q ss_pred CCeEEEe-cCCceEEEEEcCCcEEEeeCCCCCCCCCCCCCccccCeecc--CCCCCEEEEeccCCce-EEEEcCCCceee
Q 026784 101 NGVQLVA-CGHSHTLVYMRDGKIHGWGYNSYGQAANEKSTYAWYPSPVD--WCVGEVRKLAAGGGHS-AVLTDACSLKEL 176 (233)
Q Consensus 101 ~~i~~i~-~G~~hs~~L~~~G~v~~wG~n~~gqLg~~~~~~~~~p~~v~--~~~~~i~~i~~G~~hs-~~l~~~g~v~~~ 176 (233)
..|..+| .+.++.++|++.|++-..= .- ..|+.++ .+..+|++|+.=..|. .|++.+|.+|+.
T Consensus 703 ~~i~a~Avv~~~~fvald~qg~lt~h~--k~-----------g~p~~l~~~gl~G~ik~l~lD~~~nL~Alt~~G~Lf~~ 769 (1774)
T PF11725_consen 703 RVITAFAVVNDNKFVALDDQGDLTAHQ--KP-----------GRPVPLSRPGLSGEIKDLALDEKQNLYALTSTGELFRL 769 (1774)
T ss_pred CcceeEEEEcCCceEEeccCCcccccc--CC-----------CCCccCCCCCCCcchhheeeccccceeEecCCCceeec
Confidence 3455543 5678888899888875542 11 1144443 4456899999999865 788999999655
No 30
>PF03785 Peptidase_C25_C: Peptidase family C25, C terminal ig-like domain; InterPro: IPR005536 This domain is found in almost all members of MEROPS peptidase family C25, (clan CD). Peptidase family C25 is a protein family found in the bacteria Porphyromonas gingivalis (Bacteroides gingivalis) a Gram-negative anaerobic bacterial species strongly associated with adult periodontitis. One of its distinguishing characteristics and putative virulence properties is the ability to agglutinate erythrocytes []. It is a highly proteolytic organism which metabolises small peptides and amino acids. Indirect evidence suggests that the proteases produced by this microorganism constitute an important virulence factor []. Protease-encoding genes have been shown to contain multiple copies of repeated nucleotide sequences. These conserved sequences have also been found in haemagglutinin genes [].; GO: 0008233 peptidase activity, 0006508 proteolysis; PDB: 1CVR_A.
Probab=50.73 E-value=27 Score=23.45 Aligned_cols=43 Identities=23% Similarity=0.296 Sum_probs=29.8
Q ss_pred cCCeEeeccCCCcEEEEEeC-CceeEEEEcCCcEEEeeCCCCCccC
Q 026784 28 LLPRRVVALDGIFIKDVACG-GVHTCALTSKGALYAWGGCQAGQLG 72 (233)
Q Consensus 28 ~~p~~v~~l~~~~i~~is~G-~~hs~~lt~~G~v~~wG~n~~GqlG 72 (233)
..|..+.. +..=..|+|. ..-.++|++||.+|+-+--..|++-
T Consensus 7 t~Pa~i~~--~~tS~~Vs~~~~gs~ValS~dg~l~G~ai~~sG~at 50 (81)
T PF03785_consen 7 THPASINL--GQTSISVSCDVPGSYVALSQDGDLYGKAIVNSGNAT 50 (81)
T ss_dssp E--SEEET--T-SEEEEEESSTT-EEEEEETTEEEEEEE-BTTEEE
T ss_pred cccccccc--cccEEEEEecCCCcEEEEecCCEEEEEEEecCceEE
Confidence 45555543 3346789999 9999999999999999876666653
No 31
>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional
Probab=42.95 E-value=1.1e+02 Score=26.86 Aligned_cols=62 Identities=15% Similarity=0.139 Sum_probs=42.7
Q ss_pred cEEEEEeCCce---eEEEEcCCcEEEeeCCCCCccCCCCCCCCcccCCCCCCccccccCeeecCCCeEEEecCCceEEEE
Q 026784 40 FIKDVACGGVH---TCALTSKGALYAWGGCQAGQLGLGPQTRSFSFIPNESDTYFRNIPILVVPNGVQLVACGHSHTLVY 116 (233)
Q Consensus 40 ~i~~is~G~~h---s~~lt~~G~v~~wG~n~~GqlG~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~i~~i~~G~~hs~~L 116 (233)
.+..+++++.| .+++..+|++..|-.+..-.+ + .....+.+|.-=.-...|+
T Consensus 161 ~~~~~~~~~~~~~~vl~i~~~g~l~~w~~~~Wt~l-----------------------~--~~~~~~~DIi~~kGkfYAv 215 (373)
T PLN03215 161 ALVKVKEGDNHRDGVLGIGRDGKINYWDGNVLKAL-----------------------K--QMGYHFSDIIVHKGQTYAL 215 (373)
T ss_pred EEEEeecCCCcceEEEEEeecCcEeeecCCeeeEc-----------------------c--CCCceeeEEEEECCEEEEE
Confidence 34556788876 777888899988864332222 1 1235588888777778888
Q ss_pred EcCCcEEEee
Q 026784 117 MRDGKIHGWG 126 (233)
Q Consensus 117 ~~~G~v~~wG 126 (233)
+..|+||.+-
T Consensus 216 D~~G~l~~i~ 225 (373)
T PLN03215 216 DSIGIVYWIN 225 (373)
T ss_pred cCCCeEEEEe
Confidence 8889988875
No 32
>PF06204 CBM_X: Putative carbohydrate binding domain ; InterPro: IPR009342 This domain is conserved in enzymes that have carbohydrates as substrate, and may be a carbohydrate-binding domain.; PDB: 3ACT_B 2CQT_A 3QFY_B 3QFZ_A 2CQS_A 3QG0_B 3AFJ_A 3ACS_A 1V7V_A 1V7X_A ....
Probab=39.21 E-value=1e+02 Score=19.71 Aligned_cols=30 Identities=23% Similarity=0.227 Sum_probs=21.0
Q ss_pred CCCeEEEecCCceEEEEEcCCcEEEeeCCC
Q 026784 100 PNGVQLVACGHSHTLVYMRDGKIHGWGYNS 129 (233)
Q Consensus 100 ~~~i~~i~~G~~hs~~L~~~G~v~~wG~n~ 129 (233)
+.+-+.+-+-...+++|++.|.-|+|-.+.
T Consensus 24 p~P~~n~LsNg~y~~mvt~~G~GySw~~~~ 53 (66)
T PF06204_consen 24 PAPWVNVLSNGSYGVMVTNSGSGYSWAKNS 53 (66)
T ss_dssp SS--EEEE-SSSEEEEEETTSBEEEEES-T
T ss_pred CCCEEEEeeCCcEEEEEcCCCceeeccccc
Confidence 344666766778888999999999997654
No 33
>PF03785 Peptidase_C25_C: Peptidase family C25, C terminal ig-like domain; InterPro: IPR005536 This domain is found in almost all members of MEROPS peptidase family C25, (clan CD). Peptidase family C25 is a protein family found in the bacteria Porphyromonas gingivalis (Bacteroides gingivalis) a Gram-negative anaerobic bacterial species strongly associated with adult periodontitis. One of its distinguishing characteristics and putative virulence properties is the ability to agglutinate erythrocytes []. It is a highly proteolytic organism which metabolises small peptides and amino acids. Indirect evidence suggests that the proteases produced by this microorganism constitute an important virulence factor []. Protease-encoding genes have been shown to contain multiple copies of repeated nucleotide sequences. These conserved sequences have also been found in haemagglutinin genes [].; GO: 0008233 peptidase activity, 0006508 proteolysis; PDB: 1CVR_A.
Probab=38.71 E-value=49 Score=22.19 Aligned_cols=34 Identities=21% Similarity=0.297 Sum_probs=25.8
Q ss_pred CCCeEEEecC-CceEEEEEcCCcEEEeeCCCCCCC
Q 026784 100 PNGVQLVACG-HSHTLVYMRDGKIHGWGYNSYGQA 133 (233)
Q Consensus 100 ~~~i~~i~~G-~~hs~~L~~~G~v~~wG~n~~gqL 133 (233)
+..=..|+|. ....++|++||.+|+-+--..|++
T Consensus 15 ~~tS~~Vs~~~~gs~ValS~dg~l~G~ai~~sG~a 49 (81)
T PF03785_consen 15 GQTSISVSCDVPGSYVALSQDGDLYGKAIVNSGNA 49 (81)
T ss_dssp T-SEEEEEESSTT-EEEEEETTEEEEEEE-BTTEE
T ss_pred cccEEEEEecCCCcEEEEecCCEEEEEEEecCceE
Confidence 4556789999 889999999999999986556654
No 34
>PF13938 DUF4213: Domain of unknown function (DUF4213); PDB: 3NPG_A 3L5O_B.
Probab=37.91 E-value=42 Score=22.56 Aligned_cols=23 Identities=30% Similarity=0.270 Sum_probs=19.0
Q ss_pred cCCCcEEEEEeCCceeEEEEcCC
Q 026784 36 LDGIFIKDVACGGVHTCALTSKG 58 (233)
Q Consensus 36 l~~~~i~~is~G~~hs~~lt~~G 58 (233)
+++.+|+++..|...|++..++|
T Consensus 9 ~~~~~V~~~~iG~~~t~V~~~~G 31 (87)
T PF13938_consen 9 APDIRVEDVCIGLHWTAVELSDG 31 (87)
T ss_dssp CGC-EEEEEEEBSSEEEEEETT-
T ss_pred CCCCEEEEEEEcCCEEEEEeCCC
Confidence 44678999999999999999998
No 35
>PF07646 Kelch_2: Kelch motif; InterPro: IPR011498 Kelch is a 50-residue motif, named after the Drosophila mutant in which it was first identified []. This sequence motif represents one beta-sheet blade, and several of these repeats can associate to form a beta-propeller. For instance, the motif appears 6 times in Drosophila egg-chamber regulatory protein, creating a 6-bladed beta-propeller. The motif is also found in mouse protein MIPP [] and in a number of poxviruses. In addition, kelch repeats have been recognised in alpha- and beta-scruin [, ], and in galactose oxidase from the fungus Dactylium dendroides [, ]. The structure of galactose oxidase reveals that the repeated sequence corresponds to a 4-stranded anti-parallel beta-sheet motif that forms the repeat unit in a super-barrel structural fold []. The known functions of kelch-containing proteins are diverse: scruin is an actin cross-linking protein; galactose oxidase catalyses the oxidation of the hydroxyl group at the C6 position in D-galactose; neuraminidase hydrolyses sialic acid residues from glycoproteins; and kelch may have a cytoskeletal function, as it is localised to the actin-rich ring canals that connect the 15 nurse cells to the developing oocyte in Drosophila []. Nevertheless, based on the location of the kelch pattern in the catalytic unit in galactose oxidase, functionally important residues have been predicted in glyoxal oxidase []. This entry represents a type of kelch sequence motif that comprises one beta-sheet blade.; GO: 0005515 protein binding
Probab=35.90 E-value=42 Score=19.53 Aligned_cols=17 Identities=41% Similarity=0.536 Sum_probs=12.1
Q ss_pred ceEEEEEcCCcEEEeeCC
Q 026784 111 SHTLVYMRDGKIHGWGYN 128 (233)
Q Consensus 111 ~hs~~L~~~G~v~~wG~n 128 (233)
.|+++ .-++++|++|--
T Consensus 4 ~hs~~-~~~~kiyv~GG~ 20 (49)
T PF07646_consen 4 GHSAV-VLDGKIYVFGGY 20 (49)
T ss_pred ceEEE-EECCEEEEECCc
Confidence 45655 448899999854
No 36
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=35.86 E-value=75 Score=27.42 Aligned_cols=55 Identities=13% Similarity=0.122 Sum_probs=31.4
Q ss_pred EEEcCCcEEEeeCCCCCCCCCCCCCccccCeeccCCCC-CEEEEeccCC--ceEEEEcCCCceeeE
Q 026784 115 VYMRDGKIHGWGYNSYGQAANEKSTYAWYPSPVDWCVG-EVRKLAAGGG--HSAVLTDACSLKELC 177 (233)
Q Consensus 115 ~L~~~G~v~~wG~n~~gqLg~~~~~~~~~p~~v~~~~~-~i~~i~~G~~--hs~~l~~~g~v~~~g 177 (233)
+..+.|+||+|-... ..+...++....... .|.+.+...+ ..+++++++.||+|-
T Consensus 324 ~gnq~g~v~vwdL~~--------~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwd 381 (385)
T KOG1034|consen 324 LGNQSGKVYVWDLDN--------NEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWD 381 (385)
T ss_pred hccCCCcEEEEECCC--------CCCccCceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEE
Confidence 345679999995321 111233444432222 5666665554 456778899997774
No 37
>PF01436 NHL: NHL repeat; InterPro: IPR001258 The NHL repeat, named after NCL-1, HT2A and Lin-41, is found largely in a large number of eukaryotic and prokaryotic proteins. For example, the repeat is found in a variety of enzymes of the copper type II, ascorbate-dependent monooxygenase family which catalyse the C terminus alpha-amidation of biological peptides []. In many it occurs in tandem arrays, for example in the ringfinger beta-box, coiled-coil (RBCC) eukaryotic growth regulators []. The 'Brain Tumor' protein (Brat) is one such growth regulator that contains a 6-bladed NHL-repeat beta-propeller [, ]. The NHL repeats are also found in serine/threonine protein kinase (STPK) in diverse range of pathogenic bacteria. These STPK are transmembrane receptors with a intracellular N-terminal kinase domain and extracellular C-terminal sensor domain. In the STPK, PknD, from Mycobacterium tuberculosis, the sensor domain forms a rigid, six-bladed b-propeller composed of NHL repeats with a flexible tether to the transmembrane domain.; GO: 0005515 protein binding; PDB: 3FVZ_A 3FW0_A 1RWL_A 1RWI_A 1Q7F_A.
Probab=34.45 E-value=70 Score=16.33 Aligned_cols=16 Identities=31% Similarity=0.536 Sum_probs=12.2
Q ss_pred eeEEEEcCCcEEEeeC
Q 026784 50 HTCALTSKGALYAWGG 65 (233)
Q Consensus 50 hs~~lt~~G~v~~wG~ 65 (233)
|.++++.+|+||..=.
T Consensus 5 ~gvav~~~g~i~VaD~ 20 (28)
T PF01436_consen 5 HGVAVDSDGNIYVADS 20 (28)
T ss_dssp EEEEEETTSEEEEEEC
T ss_pred cEEEEeCCCCEEEEEC
Confidence 5678888888887754
No 38
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=32.84 E-value=2.1e+02 Score=24.29 Aligned_cols=104 Identities=17% Similarity=0.147 Sum_probs=60.2
Q ss_pred eCCceeEEEEcCCcEEEeeCCCCCccCCCCCCCCcccCCCCCCccccccCeeecCCCeEEEecC---CceEEEEEcCCcE
Q 026784 46 CGGVHTCALTSKGALYAWGGCQAGQLGLGPQTRSFSFIPNESDTYFRNIPILVVPNGVQLVACG---HSHTLVYMRDGKI 122 (233)
Q Consensus 46 ~G~~hs~~lt~~G~v~~wG~n~~GqlG~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~i~~i~~G---~~hs~~L~~~G~v 122 (233)
-+.-|-++...||.||.-+.. .|.+|+-+.. ..+++.+..| .-|.+++..||..
T Consensus 61 G~ap~dvapapdG~VWft~qg-~gaiGhLdP~----------------------tGev~~ypLg~Ga~Phgiv~gpdg~~ 117 (353)
T COG4257 61 GSAPFDVAPAPDGAVWFTAQG-TGAIGHLDPA----------------------TGEVETYPLGSGASPHGIVVGPDGSA 117 (353)
T ss_pred CCCccccccCCCCceEEecCc-cccceecCCC----------------------CCceEEEecCCCCCCceEEECCCCCe
Confidence 345678899999999976543 2334432211 1224444433 5688899999999
Q ss_pred EEeeCC-CCCCCCCCCCCccccCeeccCCCCCEEEEeccCCceEEEEcCCCceeeEEee
Q 026784 123 HGWGYN-SYGQAANEKSTYAWYPSPVDWCVGEVRKLAAGGGHSAVLTDACSLKELCEFR 180 (233)
Q Consensus 123 ~~wG~n-~~gqLg~~~~~~~~~p~~v~~~~~~i~~i~~G~~hs~~l~~~g~v~~~g~~g 180 (233)
|.+=.. ..+.++....+....|.+ .+.+-++-.+.+++..|++|..++.|
T Consensus 118 Witd~~~aI~R~dpkt~evt~f~lp--------~~~a~~nlet~vfD~~G~lWFt~q~G 168 (353)
T COG4257 118 WITDTGLAIGRLDPKTLEVTRFPLP--------LEHADANLETAVFDPWGNLWFTGQIG 168 (353)
T ss_pred eEecCcceeEEecCcccceEEeecc--------cccCCCcccceeeCCCccEEEeeccc
Confidence 988443 222222222222222211 24455567788999999987666644
No 39
>PF08887 GAD-like: GAD-like domain; InterPro: IPR014983 This domain is functionally uncharacterised, but it appears to be distantly related to the GAD domain IPR004115 from INTERPRO.
Probab=32.70 E-value=45 Score=23.74 Aligned_cols=22 Identities=32% Similarity=0.456 Sum_probs=18.6
Q ss_pred eCCceeEEEEcCCcEEEeeCCC
Q 026784 46 CGGVHTCALTSKGALYAWGGCQ 67 (233)
Q Consensus 46 ~G~~hs~~lt~~G~v~~wG~n~ 67 (233)
.-..|.++.|+-|.||.|+.+.
T Consensus 77 ~~~~~~ia~tAFGdl~~w~e~~ 98 (109)
T PF08887_consen 77 PDNYIPIARTAFGDLYVWGENT 98 (109)
T ss_pred CceEEEEEEcccccEEEEEcCC
Confidence 3468999999999999999653
No 40
>PF13854 Kelch_5: Kelch motif
Probab=30.89 E-value=59 Score=18.32 Aligned_cols=18 Identities=28% Similarity=0.302 Sum_probs=13.0
Q ss_pred ceEEEEEcCCcEEEeeCCC
Q 026784 111 SHTLVYMRDGKIHGWGYNS 129 (233)
Q Consensus 111 ~hs~~L~~~G~v~~wG~n~ 129 (233)
.|++++. ++++|.+|=..
T Consensus 7 ~hs~~~~-~~~iyi~GG~~ 24 (42)
T PF13854_consen 7 GHSAVVV-GNNIYIFGGYS 24 (42)
T ss_pred ceEEEEE-CCEEEEEcCcc
Confidence 5676665 58999998543
No 41
>PF07312 DUF1459: Protein of unknown function (DUF1459); InterPro: IPR009924 This family consists of several hypothetical Caenorhabditis elegans proteins of around 85 residues in length. The function of this family is unknown.
Probab=30.61 E-value=33 Score=22.83 Aligned_cols=13 Identities=31% Similarity=0.624 Sum_probs=9.8
Q ss_pred CcE-EEeeCCCCCC
Q 026784 120 GKI-HGWGYNSYGQ 132 (233)
Q Consensus 120 G~v-~~wG~n~~gq 132 (233)
-.+ |.||+|..-+
T Consensus 56 Psv~waWGSNKnk~ 69 (84)
T PF07312_consen 56 PSVYWAWGSNKNKQ 69 (84)
T ss_pred cceeeeeccCCCCC
Confidence 356 9999998654
No 42
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=30.06 E-value=3.3e+02 Score=22.79 Aligned_cols=66 Identities=14% Similarity=0.145 Sum_probs=37.3
Q ss_pred EEEEEeC--CceeEEEEcCCcEEEeeCCCCCccCCCCCCCCcccCCCCCCccccccCeeecCCCeEEEecCCce--EEEE
Q 026784 41 IKDVACG--GVHTCALTSKGALYAWGGCQAGQLGLGPQTRSFSFIPNESDTYFRNIPILVVPNGVQLVACGHSH--TLVY 116 (233)
Q Consensus 41 i~~is~G--~~hs~~lt~~G~v~~wG~n~~GqlG~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~i~~i~~G~~h--s~~L 116 (233)
|..|.-- ..|-+.-+.+|.|+.|-.... ..... .+|. ....|.+++...+- .++.
T Consensus 127 Vn~vvlhpnQteLis~dqsg~irvWDl~~~------~c~~~-------------liPe--~~~~i~sl~v~~dgsml~a~ 185 (311)
T KOG0315|consen 127 VNTVVLHPNQTELISGDQSGNIRVWDLGEN------SCTHE-------------LIPE--DDTSIQSLTVMPDGSMLAAA 185 (311)
T ss_pred cceEEecCCcceEEeecCCCcEEEEEccCC------ccccc-------------cCCC--CCcceeeEEEcCCCcEEEEe
Confidence 4444443 344555577899999963221 11111 1121 12446666665444 4567
Q ss_pred EcCCcEEEeeC
Q 026784 117 MRDGKIHGWGY 127 (233)
Q Consensus 117 ~~~G~v~~wG~ 127 (233)
++.|++|+|-.
T Consensus 186 nnkG~cyvW~l 196 (311)
T KOG0315|consen 186 NNKGNCYVWRL 196 (311)
T ss_pred cCCccEEEEEc
Confidence 88999999965
No 43
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=29.39 E-value=1.8e+02 Score=23.89 Aligned_cols=74 Identities=15% Similarity=0.243 Sum_probs=40.1
Q ss_pred EEeC-CceeEEEEcCCcEEEeeCCCCCccCCCCCCCCcccCCCCCC-ccccccCeeecCCCeE-EEecCCceEEEEEcCC
Q 026784 44 VACG-GVHTCALTSKGALYAWGGCQAGQLGLGPQTRSFSFIPNESD-TYFRNIPILVVPNGVQ-LVACGHSHTLVYMRDG 120 (233)
Q Consensus 44 is~G-~~hs~~lt~~G~v~~wG~n~~GqlG~~~~~~~~~~~~~~~~-~~~~~~p~~~~~~~i~-~i~~G~~hs~~L~~~G 120 (233)
++.+ .+-|+.+..||+|+..|-.. ...+.+.|.... ......+.+. ... ......+=.+.|..+|
T Consensus 114 m~~~RWYpT~~~L~DG~vlIvGG~~---------~~t~E~~P~~~~~~~~~~~~~l~---~~~~~~~~nlYP~~~llPdG 181 (243)
T PF07250_consen 114 MQSGRWYPTATTLPDGRVLIVGGSN---------NPTYEFWPPKGPGPGPVTLPFLS---QTSDTLPNNLYPFVHLLPDG 181 (243)
T ss_pred ccCCCccccceECCCCCEEEEeCcC---------CCcccccCCccCCCCceeeecch---hhhccCccccCceEEEcCCC
Confidence 4444 47788888999999998433 222333333211 1111111111 111 1223344477888999
Q ss_pred cEEEeeCCC
Q 026784 121 KIHGWGYNS 129 (233)
Q Consensus 121 ~v~~wG~n~ 129 (233)
+||.|+.+.
T Consensus 182 ~lFi~an~~ 190 (243)
T PF07250_consen 182 NLFIFANRG 190 (243)
T ss_pred CEEEEEcCC
Confidence 999998754
No 44
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=28.05 E-value=2.8e+02 Score=27.33 Aligned_cols=60 Identities=13% Similarity=0.057 Sum_probs=42.7
Q ss_pred CCCeEEEecCCceEEEEEcCCcEEEeeCCCCCCCCCCCCCccccCeeccCCCCCEEEEeccCCceEEEEcCCC
Q 026784 100 PNGVQLVACGHSHTLVYMRDGKIHGWGYNSYGQAANEKSTYAWYPSPVDWCVGEVRKLAAGGGHSAVLTDACS 172 (233)
Q Consensus 100 ~~~i~~i~~G~~hs~~L~~~G~v~~wG~n~~gqLg~~~~~~~~~p~~v~~~~~~i~~i~~G~~hs~~l~~~g~ 172 (233)
.+.|+.|+|+....+++|+.|.+-+|=.. | .|..|-.+..+++.+++=.+|.+++...|.
T Consensus 524 ~E~~~~V~~t~~~Vav~TS~~~lRvFt~g-----G--------vq~~I~t~~gP~vtaag~~d~L~iv~h~s~ 583 (933)
T KOG1274|consen 524 QESIEAVAATSGWVAVATSLGYLRVFTIG-----G--------VQREIFTLPGPVVTAAGFEDSLAIVYHSSK 583 (933)
T ss_pred CCceeEEEccCcEEEEEeccceEEEEEec-----c--------eeeeEeecccceEEeecccceEEEEEecCC
Confidence 48899999999999999999987777321 1 344554445578877766666666666554
No 45
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=27.15 E-value=1.7e+02 Score=28.23 Aligned_cols=94 Identities=19% Similarity=0.295 Sum_probs=53.5
Q ss_pred EEEeCCceeEEEEcCCcEEEeeCCCCCccCCCCCCCCcccCCCCCCccccccCeeecCCCeEEEecCCceEEEEEcCCc-
Q 026784 43 DVACGGVHTCALTSKGALYAWGGCQAGQLGLGPQTRSFSFIPNESDTYFRNIPILVVPNGVQLVACGHSHTLVYMRDGK- 121 (233)
Q Consensus 43 ~is~G~~hs~~lt~~G~v~~wG~n~~GqlG~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~i~~i~~G~~hs~~L~~~G~- 121 (233)
-++.|..|-+++. ||.|-.|..+.- + . ..++|..|+-..+-+.++|.-.+
T Consensus 137 vvSVGsQHDMIVn----v~dWr~N~~~as------n--------------k-----iss~Vsav~fsEdgSYfvT~gnrH 187 (1080)
T KOG1408|consen 137 VVSVGSQHDMIVN----VNDWRVNSSGAS------N--------------K-----ISSVVSAVAFSEDGSYFVTSGNRH 187 (1080)
T ss_pred EEeeccccceEEE----hhhhhhcccccc------c--------------c-----cceeEEEEEEccCCceeeeeeeee
Confidence 3566888887875 888887765431 0 0 12346666666666666664332
Q ss_pred EEEeeCCCCCCCCCCCCCccccCeecc----CCCC----CEEEEeccCC----ceEEEEcCCCc
Q 026784 122 IHGWGYNSYGQAANEKSTYAWYPSPVD----WCVG----EVRKLAAGGG----HSAVLTDACSL 173 (233)
Q Consensus 122 v~~wG~n~~gqLg~~~~~~~~~p~~v~----~~~~----~i~~i~~G~~----hs~~l~~~g~v 173 (233)
|-.| +-. .+. ....|.+++ ++.. ....|+||.. .+++|+..|.+
T Consensus 188 vk~w-yl~---~~~----KykdpiPl~gRs~~lg~lr~n~f~avaCg~gicAestfait~qGhL 243 (1080)
T KOG1408|consen 188 VKLW-YLQ---IQS----KYKDPIPLPGRSYFLGNLRFNEFLAVACGVGICAESTFAITAQGHL 243 (1080)
T ss_pred EEEE-Eee---ccc----cccCCccccchhhhccccccchhhhhhhcCcccccceEEEecccce
Confidence 3333 211 111 223333332 2211 5788999987 99999999887
No 46
>PF13570 PQQ_3: PQQ-like domain; PDB: 3HXJ_B 3Q54_A.
Probab=26.34 E-value=1e+02 Score=16.89 Aligned_cols=20 Identities=35% Similarity=0.423 Sum_probs=13.5
Q ss_pred EeCCceeEEEEcCCcEEEee
Q 026784 45 ACGGVHTCALTSKGALYAWG 64 (233)
Q Consensus 45 s~G~~hs~~lt~~G~v~~wG 64 (233)
+....+.++.+.+|+||+.-
T Consensus 18 ~v~~g~vyv~~~dg~l~ald 37 (40)
T PF13570_consen 18 AVAGGRVYVGTGDGNLYALD 37 (40)
T ss_dssp EECTSEEEEE-TTSEEEEEE
T ss_pred EEECCEEEEEcCCCEEEEEe
Confidence 44556777777888888763
No 47
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=25.71 E-value=2.7e+02 Score=24.32 Aligned_cols=73 Identities=18% Similarity=0.271 Sum_probs=37.8
Q ss_pred CcEEEEEeCCc-ee-EEEEcCCc-EEEeeCCCCCccCCCCCCCCcccCCCCCCccccccCeeecCCCeEEEecCC-ceEE
Q 026784 39 IFIKDVACGGV-HT-CALTSKGA-LYAWGGCQAGQLGLGPQTRSFSFIPNESDTYFRNIPILVVPNGVQLVACGH-SHTL 114 (233)
Q Consensus 39 ~~i~~is~G~~-hs-~~lt~~G~-v~~wG~n~~GqlG~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~i~~i~~G~-~hs~ 114 (233)
..+..|..|.. |. ++.+.||+ +|..+ ..|.+..=+.. ..+.+.+|..|. -+.+
T Consensus 27 ~~~~~i~~~~~~h~~~~~s~Dgr~~yv~~--rdg~vsviD~~---------------------~~~~v~~i~~G~~~~~i 83 (369)
T PF02239_consen 27 KVVARIPTGGAPHAGLKFSPDGRYLYVAN--RDGTVSVIDLA---------------------TGKVVATIKVGGNPRGI 83 (369)
T ss_dssp SEEEEEE-STTEEEEEE-TT-SSEEEEEE--TTSEEEEEETT---------------------SSSEEEEEE-SSEEEEE
T ss_pred eEEEEEcCCCCceeEEEecCCCCEEEEEc--CCCeEEEEECC---------------------cccEEEEEecCCCcceE
Confidence 34678887654 65 55678887 77764 34543221111 123477887774 4588
Q ss_pred EEEcCCcEEEeeCCCCCCCC
Q 026784 115 VYMRDGKIHGWGYNSYGQAA 134 (233)
Q Consensus 115 ~L~~~G~v~~wG~n~~gqLg 134 (233)
+++.||+...-+....+++.
T Consensus 84 ~~s~DG~~~~v~n~~~~~v~ 103 (369)
T PF02239_consen 84 AVSPDGKYVYVANYEPGTVS 103 (369)
T ss_dssp EE--TTTEEEEEEEETTEEE
T ss_pred EEcCCCCEEEEEecCCCcee
Confidence 89999985554443334443
No 48
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=25.02 E-value=4.7e+02 Score=22.84 Aligned_cols=80 Identities=10% Similarity=0.062 Sum_probs=43.0
Q ss_pred EEEEEeCCceeEEEEcCCc-EEEeeCCCCCccCCCCCCCCcccCCCCCCccccccCeeecCCCeEEEecCCc--------
Q 026784 41 IKDVACGGVHTCALTSKGA-LYAWGGCQAGQLGLGPQTRSFSFIPNESDTYFRNIPILVVPNGVQLVACGHS-------- 111 (233)
Q Consensus 41 i~~is~G~~hs~~lt~~G~-v~~wG~n~~GqlG~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~i~~i~~G~~-------- 111 (233)
+..|..|...-.+++.||+ +|.+ ...+-.+-.|...+.....-.. ..+.+.+|..|..
T Consensus 40 ~g~i~~G~~P~~~~spDg~~lyva-~~~~~R~~~G~~~d~V~v~D~~------------t~~~~~~i~~p~~p~~~~~~~ 106 (352)
T TIGR02658 40 LGMTDGGFLPNPVVASDGSFFAHA-STVYSRIARGKRTDYVEVIDPQ------------THLPIADIELPEGPRFLVGTY 106 (352)
T ss_pred EEEEEccCCCceeECCCCCEEEEE-eccccccccCCCCCEEEEEECc------------cCcEEeEEccCCCchhhccCc
Confidence 4568888766667888876 5544 3333333344333331111111 1233555555444
Q ss_pred -eEEEEEcCCc-EEEeeCCCCCCC
Q 026784 112 -HTLVYMRDGK-IHGWGYNSYGQA 133 (233)
Q Consensus 112 -hs~~L~~~G~-v~~wG~n~~gqL 133 (233)
+.++|+.||+ +|+.-......+
T Consensus 107 ~~~~~ls~dgk~l~V~n~~p~~~V 130 (352)
T TIGR02658 107 PWMTSLTPDNKTLLFYQFSPSPAV 130 (352)
T ss_pred cceEEECCCCCEEEEecCCCCCEE
Confidence 4889999996 777743333333
No 49
>PF06462 Hyd_WA: Propeller; InterPro: IPR006624 Tectonins I and II are two dominant proteins in the nuclei and nuclear matrix from plasmodia of Physarum polycephalum (Slime mold) which encode 217 and 353 amino acids, respectively. Tectonin I is homologous to the C-terminal two-thirds of tectonin II. Both proteins contain six tandem repeats that are each 33-37 amino acids in length and define a new consensus sequence. Homologous repeats are found in L-6, a bacterial lipopolysaccharide-binding lectin from horseshoe crab hemocytes. The repetitive sequences of the tectonins and L-6 are reminiscent of the WD repeats of the beta-subunit of G proteins, suggesting that they form beta-propeller domains. The tectonins may be lectins that function as part of a transmembrane signalling complex during phagocytosis [].
Probab=24.99 E-value=76 Score=17.00 Aligned_cols=14 Identities=14% Similarity=0.102 Sum_probs=10.3
Q ss_pred eEEEEEcCCcEEEe
Q 026784 112 HTLVYMRDGKIHGW 125 (233)
Q Consensus 112 hs~~L~~~G~v~~w 125 (233)
+.-|++.+|+||.=
T Consensus 2 ~VWav~~~G~v~~R 15 (32)
T PF06462_consen 2 QVWAVTSDGSVYFR 15 (32)
T ss_pred eEEEEcCCCCEEEE
Confidence 45688888888753
No 50
>COG4256 HemP Hemin uptake protein [Inorganic ion transport and metabolism]
Probab=23.00 E-value=1.1e+02 Score=19.21 Aligned_cols=26 Identities=31% Similarity=0.449 Sum_probs=21.2
Q ss_pred eCCceeEEEEcCCcEEEeeCCCCCcc
Q 026784 46 CGGVHTCALTSKGALYAWGGCQAGQL 71 (233)
Q Consensus 46 ~G~~hs~~lt~~G~v~~wG~n~~Gql 71 (233)
.|..+-++|+-+|.+|..-.-..|.|
T Consensus 34 fgg~~~i~I~H~Ga~Y~lr~Tr~GKL 59 (63)
T COG4256 34 FGGDGKIIIDHDGAEYLLRKTRAGKL 59 (63)
T ss_pred ccCCCeEEEecCCceEEEeeeeccee
Confidence 58899999999999998876666554
No 51
>PF13964 Kelch_6: Kelch motif
Probab=21.77 E-value=83 Score=18.21 Aligned_cols=18 Identities=33% Similarity=0.451 Sum_probs=12.6
Q ss_pred ceEEEEEcCCcEEEeeCCC
Q 026784 111 SHTLVYMRDGKIHGWGYNS 129 (233)
Q Consensus 111 ~hs~~L~~~G~v~~wG~n~ 129 (233)
.|+++.. ++++|++|-..
T Consensus 4 ~~s~v~~-~~~iyv~GG~~ 21 (50)
T PF13964_consen 4 GHSAVVV-GGKIYVFGGYD 21 (50)
T ss_pred cCEEEEE-CCEEEEECCCC
Confidence 4566554 77999998544
No 52
>PHA02146 hypothetical protein
Probab=21.00 E-value=1.4e+02 Score=19.37 Aligned_cols=32 Identities=16% Similarity=0.276 Sum_probs=22.2
Q ss_pred EecCCceEE-EEEcCCcEEEeeCCCCCCCCCCC
Q 026784 106 VACGHSHTL-VYMRDGKIHGWGYNSYGQAANEK 137 (233)
Q Consensus 106 i~~G~~hs~-~L~~~G~v~~wG~n~~gqLg~~~ 137 (233)
|.-|..+++ -|+++|.+|+.|-.-.|.=|...
T Consensus 23 i~ng~ef~v~~~d~dgd~~s~~iswng~dg~s~ 55 (86)
T PHA02146 23 ITNGTEFTVTNIDDDGDLYTYDISWNGRDGKSA 55 (86)
T ss_pred cCCCcEEEeeccccCCCeEeecccccCccCCcc
Confidence 445655554 47899999999977777655443
No 53
>PF05862 IceA2: Helicobacter pylori IceA2 protein; InterPro: IPR008655 This family consists of several Helicobacter pylori specific IceA2 proteins. The function of this family is unknown.
Probab=20.57 E-value=2.1e+02 Score=17.75 Aligned_cols=26 Identities=12% Similarity=0.164 Sum_probs=21.5
Q ss_pred CCCeEEEecCCceEEEEEcCCcEEEe
Q 026784 100 PNGVQLVACGHSHTLVYMRDGKIHGW 125 (233)
Q Consensus 100 ~~~i~~i~~G~~hs~~L~~~G~v~~w 125 (233)
+.+++.+.+...-.++.+.+|+|=-+
T Consensus 25 GsN~v~v~~~g~~VA~~ta~GkveeY 50 (59)
T PF05862_consen 25 GSNAVAVQVDGGIVAAVTANGKVEEY 50 (59)
T ss_pred CCceEEEeeCCCEEEEEecCCceeee
Confidence 56788899988889999999988544
Done!