Your job contains 1 sequence.
>026785
MAPKQGKPRVSRNPELIRGIGKFSRSKMYHKRGLWAIKAKNGGVFPRHDPKPKAAAPAEK
PPKFYPADDVKKPLVNKRKPKPTKLRASITPGTVLIILAGRFKGKRVVFLKQLPSGLLLV
SGPFKINGVPLRRVNQSYVIGTSTKVDISGVNVDKFDDKYFAKEVERKKKKGENEFFESE
KEEKKSLPQEKKDDQKSVDAPLIKAIEAVPDLKAYLGARFSLRAGMKPHELVF
The BLAST search returned 3 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 026785
(233 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2031576 - symbol:AT1G74050 species:3702 "Arabi... 812 6.6e-81 1
TAIR|locus:2027483 - symbol:AT1G18540 species:3702 "Arabi... 809 1.4e-80 1
TAIR|locus:2031561 - symbol:AT1G74060 species:3702 "Arabi... 799 1.6e-79 1
UNIPROTKB|F1Q424 - symbol:RPL6 "60S ribosomal protein L6"... 366 4.7e-44 2
MGI|MGI:108057 - symbol:Rpl6 "ribosomal protein L6" speci... 369 5.9e-44 2
UNIPROTKB|Q2YGT9 - symbol:RPL6 "60S ribosomal protein L6"... 369 7.6e-44 2
UNIPROTKB|Q58DQ3 - symbol:RPL6 "60S ribosomal protein L6"... 366 1.6e-43 2
UNIPROTKB|Q02878 - symbol:RPL6 "60S ribosomal protein L6"... 361 1.6e-43 2
RGD|619826 - symbol:Rpl6 "ribosomal protein L6" species:1... 368 8.5e-43 2
UNIPROTKB|F1LQS3 - symbol:Rpl6 "60S ribosomal protein L6"... 368 8.5e-43 2
UNIPROTKB|H7C5Y5 - symbol:H7C5Y5 "60S ribosomal protein L... 368 8.5e-43 2
UNIPROTKB|Q8UWG7 - symbol:RPL6 "60S ribosomal protein L6"... 366 2.5e-41 2
UNIPROTKB|G3N2R1 - symbol:G3N2R1 "60S ribosomal protein L... 345 2.5e-41 2
UNIPROTKB|J9PA17 - symbol:J9PA17 "60S ribosomal protein L... 348 8.4e-41 2
ZFIN|ZDB-GENE-030131-8671 - symbol:rpl6 "ribosomal protei... 336 6.5e-39 2
SGD|S000004440 - symbol:RPL6B "Ribosomal 60S subunit prot... 409 3.4e-38 1
SGD|S000004538 - symbol:RPL6A "Ribosomal 60S subunit prot... 404 1.1e-37 1
ASPGD|ASPL0000060399 - symbol:AN1166 species:162425 "Emer... 379 5.1e-35 1
WB|WBGene00004417 - symbol:rpl-6 species:6239 "Caenorhabd... 333 1.0e-34 2
UNIPROTKB|P47991 - symbol:rpl-6 "60S ribosomal protein L6... 333 1.0e-34 2
UNIPROTKB|F1LUV7 - symbol:F1LUV7 "Uncharacterized protein... 234 3.4e-34 3
POMBASE|SPCC622.18 - symbol:rpl6 "60S ribosomal protein L... 370 4.6e-34 1
UNIPROTKB|F1M2R6 - symbol:F1M2R6 "Uncharacterized protein... 243 7.0e-34 3
UNIPROTKB|G4MSC0 - symbol:MGG_04444 "60S ribosomal protei... 367 9.5e-34 1
UNIPROTKB|F1LVJ5 - symbol:F1LVJ5 "Uncharacterized protein... 358 8.5e-33 1
UNIPROTKB|F8W181 - symbol:RPL6 "60S ribosomal protein L6"... 351 4.7e-32 1
DICTYBASE|DDB_G0292460 - symbol:rpl6 "60S ribosomal prote... 347 1.3e-31 1
RGD|1590802 - symbol:LOC367276 "similar to 60S ribosomal ... 228 6.6e-28 2
FB|FBgn0039857 - symbol:RpL6 "Ribosomal protein L6" speci... 305 3.5e-27 1
UNIPROTKB|J9NU22 - symbol:J9NU22 "60S ribosomal protein L... 303 5.7e-27 1
UNIPROTKB|F1M4J7 - symbol:F1M4J7 "Uncharacterized protein... 200 7.1e-25 2
UNIPROTKB|F1M2L7 - symbol:F1M2L7 "Uncharacterized protein... 188 1.3e-23 2
UNIPROTKB|J9P4W9 - symbol:J9P4W9 "Uncharacterized protein... 210 7.6e-22 2
GENEDB_PFALCIPARUM|PF13_0213 - symbol:PF13_0213 "60S ribo... 177 2.0e-16 2
UNIPROTKB|Q8IDV1 - symbol:PF13_0213 "60S ribosomal protei... 177 2.0e-16 2
UNIPROTKB|F8VZ45 - symbol:RPL6 "60S ribosomal protein L6"... 115 4.8e-16 2
UNIPROTKB|F8VR69 - symbol:RPL6 "60S ribosomal protein L6"... 175 2.1e-13 1
UNIPROTKB|F8VRY1 - symbol:RPL6 "60S ribosomal protein L6"... 115 5.2e-07 1
UNIPROTKB|F8VWR1 - symbol:RPL6 "60S ribosomal protein L6"... 115 5.2e-07 1
UNIPROTKB|F8VZA3 - symbol:RPL6 "60S ribosomal protein L6"... 115 5.2e-07 1
>TAIR|locus:2031576 [details] [associations]
symbol:AT1G74050 species:3702 "Arabidopsis thaliana"
[GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS]
[GO:0005622 "intracellular" evidence=IEA;ISS] [GO:0005737
"cytoplasm" evidence=ISM] [GO:0005840 "ribosome" evidence=IEA;ISS]
[GO:0006412 "translation" evidence=IEA;ISS] [GO:0005886 "plasma
membrane" evidence=IDA] [GO:0016020 "membrane" evidence=IDA]
[GO:0022625 "cytosolic large ribosomal subunit" evidence=IDA]
[GO:0005829 "cytosol" evidence=IDA] [GO:0009506 "plasmodesma"
evidence=IDA] InterPro:IPR000915 InterPro:IPR005568 Pfam:PF01159
Pfam:PF03868 EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005886
GO:GO:0009506 GO:GO:0006412 GO:GO:0003735 EMBL:AC016662
Gene3D:2.30.30.30 InterPro:IPR014722 GO:GO:0022625
HOGENOM:HOG000207317 KO:K02934 ProtClustDB:CLSN2682203
PANTHER:PTHR10715 UniGene:At.25310 EMBL:AY054573 EMBL:AY081305
EMBL:AY114641 EMBL:AY087325 IPI:IPI00543748 PIR:D96768
RefSeq:NP_177545.1 ProteinModelPortal:Q9C9C5 SMR:Q9C9C5
IntAct:Q9C9C5 STRING:Q9C9C5 PRIDE:Q9C9C5 EnsemblPlants:AT1G74050.1
GeneID:843744 KEGG:ath:AT1G74050 GeneFarm:395 TAIR:At1g74050
InParanoid:Q9C9C5 OMA:EHINDAY PhylomeDB:Q9C9C5
Genevestigator:Q9C9C5 GermOnline:AT1G74050 Uniprot:Q9C9C5
Length = 233
Score = 812 (290.9 bits), Expect = 6.6e-81, P = 6.6e-81
Identities = 163/233 (69%), Positives = 177/233 (75%)
Query: 1 MAPKQGKPRVSRNPELIRGIGKFSRSKMYHKRGLWAIKAKNGGVFPRHDXXXXXXXXXXX 60
M KQ P+V+RNP+LIRG+GK+SRS+MYHKRGLWAIKAKNGGVFPRHD
Sbjct: 1 MPAKQRTPKVNRNPDLIRGVGKYSRSQMYHKRGLWAIKAKNGGVFPRHDAKSKVDAPVEK 60
Query: 61 XXXFYPADDVKKPLVNKRKPKPTKLRASITPGTVLIILAGRFKGKRVVFLKQLPSGLLLV 120
FYPA+DVKKPL N+R KPTKLRASITPGTVLIILAGRFKGKRVVFLKQL SGLLLV
Sbjct: 61 PPKFYPAEDVKKPLPNRRTAKPTKLRASITPGTVLIILAGRFKGKRVVFLKQLASGLLLV 120
Query: 121 SGPFKINGVPLRRVNQSYVIGTSTKVDISGVNVDKFDDKYFAKEVXXXXXXXXXXXXXXX 180
+GPFKINGVPLRRVNQ+YVIGTSTKVDISGV +DKFDDKYF K
Sbjct: 121 TGPFKINGVPLRRVNQAYVIGTSTKVDISGVTLDKFDDKYFGKVAEKKKKKTEGEFFEAE 180
Query: 181 XXXXXXXXXXXXDDQKSVDAPLIKAIEAVPDLKAYLGARFSLRAGMKPHELVF 233
DDQK+VDA LIKAIEAVP+LK YLGARFSL+ GMKPHELVF
Sbjct: 181 KEEKKEIPQVKKDDQKAVDAALIKAIEAVPELKTYLGARFSLKQGMKPHELVF 233
>TAIR|locus:2027483 [details] [associations]
symbol:AT1G18540 species:3702 "Arabidopsis thaliana"
[GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS]
[GO:0005622 "intracellular" evidence=IEA;ISS] [GO:0005737
"cytoplasm" evidence=ISM] [GO:0005840 "ribosome" evidence=IEA;ISS]
[GO:0006412 "translation" evidence=IEA;ISS] [GO:0009507
"chloroplast" evidence=IDA] [GO:0005886 "plasma membrane"
evidence=IDA] [GO:0022626 "cytosolic ribosome" evidence=IDA]
[GO:0005783 "endoplasmic reticulum" evidence=IDA] [GO:0016020
"membrane" evidence=IDA] [GO:0022625 "cytosolic large ribosomal
subunit" evidence=IDA] [GO:0005829 "cytosol" evidence=IDA]
[GO:0009506 "plasmodesma" evidence=IDA] [GO:0001510 "RNA
methylation" evidence=RCA] InterPro:IPR000915 InterPro:IPR005568
Pfam:PF01159 Pfam:PF03868 GO:GO:0005783 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005886 GO:GO:0009506 GO:GO:0009507
GO:GO:0006412 GO:GO:0003735 EMBL:AC026238 Gene3D:2.30.30.30
InterPro:IPR014722 GO:GO:0022625 eggNOG:COG2163 EMBL:AY054675
EMBL:AY072496 IPI:IPI00522202 PIR:H86318 RefSeq:NP_173289.1
UniGene:At.24719 UniGene:At.70629 ProteinModelPortal:Q9FZ76
SMR:Q9FZ76 STRING:Q9FZ76 PaxDb:Q9FZ76 PRIDE:Q9FZ76
EnsemblPlants:AT1G18540.1 GeneID:838435 KEGG:ath:AT1G18540
GeneFarm:394 TAIR:At1g18540 HOGENOM:HOG000207317 InParanoid:Q9FZ76
KO:K02934 OMA:VSGPFKV PhylomeDB:Q9FZ76 ProtClustDB:CLSN2682203
Genevestigator:Q9FZ76 GermOnline:AT1G18540 PANTHER:PTHR10715
Uniprot:Q9FZ76
Length = 233
Score = 809 (289.8 bits), Expect = 1.4e-80, P = 1.4e-80
Identities = 159/226 (70%), Positives = 176/226 (77%)
Query: 8 PRVSRNPELIRGIGKFSRSKMYHKRGLWAIKAKNGGVFPRHDXXXXXXXXXXXXXXFYPA 67
P+V+RNP+LIRG+GK+SRS+MYHKRGLWAIKAKNGGVFPRHD FYPA
Sbjct: 8 PKVNRNPDLIRGVGKYSRSQMYHKRGLWAIKAKNGGVFPRHDAQPKVDAPVEKPAKFYPA 67
Query: 68 DDVKKPLVNKRKPKPTKLRASITPGTVLIILAGRFKGKRVVFLKQLPSGLLLVSGPFKIN 127
+DVKKPLVN+RKPKPTKL+ASITPGTVLIILAGRFKGKRVVFLKQL SGLLLV+GPFKIN
Sbjct: 68 EDVKKPLVNRRKPKPTKLKASITPGTVLIILAGRFKGKRVVFLKQLSSGLLLVTGPFKIN 127
Query: 128 GVPLRRVNQSYVIGTSTKVDISGVNVDKFDDKYFAKEVXXXXXXXXXXXXXXXXXXXXXX 187
GVPLRRVNQ+YVIGTSTK+DISGVN +KFDDKYF K
Sbjct: 128 GVPLRRVNQAYVIGTSTKIDISGVNTEKFDDKYFGKVAEKKKKKTEGEFFEAEKEEKKEI 187
Query: 188 XXXXXDDQKSVDAPLIKAIEAVPDLKAYLGARFSLRAGMKPHELVF 233
+DQK+VDA LIK+IEAVP+LK YLGARFSL GMKPHELVF
Sbjct: 188 PQEKKEDQKTVDAALIKSIEAVPELKVYLGARFSLSQGMKPHELVF 233
>TAIR|locus:2031561 [details] [associations]
symbol:AT1G74060 species:3702 "Arabidopsis thaliana"
[GO:0003735 "structural constituent of ribosome" evidence=IEA;ISS]
[GO:0005622 "intracellular" evidence=IEA;ISS] [GO:0005737
"cytoplasm" evidence=ISM] [GO:0005840 "ribosome" evidence=IEA;ISS]
[GO:0006412 "translation" evidence=IEA;ISS] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0022626 "cytosolic ribosome" evidence=IDA]
[GO:0022625 "cytosolic large ribosomal subunit" evidence=IDA]
[GO:0005829 "cytosol" evidence=RCA] InterPro:IPR000915
InterPro:IPR005568 Pfam:PF01159 Pfam:PF03868 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005730 GO:GO:0006412 GO:GO:0003735
EMBL:AC016662 Gene3D:2.30.30.30 InterPro:IPR014722 GO:GO:0022625
eggNOG:COG2163 HOGENOM:HOG000207317 KO:K02934
ProtClustDB:CLSN2682203 PANTHER:PTHR10715 EMBL:AY062622
EMBL:BT002588 IPI:IPI00539595 PIR:E96768 RefSeq:NP_177546.1
UniGene:At.24044 UniGene:At.25310 ProteinModelPortal:Q9C9C6
SMR:Q9C9C6 STRING:Q9C9C6 PaxDb:Q9C9C6 PRIDE:Q9C9C6
EnsemblPlants:AT1G74060.1 GeneID:843746 KEGG:ath:AT1G74060
GeneFarm:392 TAIR:At1g74060 InParanoid:Q9C9C6 OMA:KYELTEQ
PhylomeDB:Q9C9C6 Genevestigator:Q9C9C6 GermOnline:AT1G74060
Uniprot:Q9C9C6
Length = 233
Score = 799 (286.3 bits), Expect = 1.6e-79, P = 1.6e-79
Identities = 161/233 (69%), Positives = 175/233 (75%)
Query: 1 MAPKQGKPRVSRNPELIRGIGKFSRSKMYHKRGLWAIKAKNGGVFPRHDXXXXXXXXXXX 60
M KQ +V+RNP+LIRG+GK+SRS+MYHKRGLWAIKAKNGGVFPRHD
Sbjct: 1 MPAKQRTAKVNRNPDLIRGVGKYSRSQMYHKRGLWAIKAKNGGVFPRHDAKSKVDAPVEK 60
Query: 61 XXXFYPADDVKKPLVNKRKPKPTKLRASITPGTVLIILAGRFKGKRVVFLKQLPSGLLLV 120
FYPA+DVKKPL N+R KP KLRASITPGTVLIILAGRFKGKRVVFLKQL SGLLLV
Sbjct: 61 PPKFYPAEDVKKPLPNRRTAKPAKLRASITPGTVLIILAGRFKGKRVVFLKQLASGLLLV 120
Query: 121 SGPFKINGVPLRRVNQSYVIGTSTKVDISGVNVDKFDDKYFAKEVXXXXXXXXXXXXXXX 180
+GPFKINGVPLRRVNQ+YVIGTSTKVDISGV +DKFDDKYF K
Sbjct: 121 TGPFKINGVPLRRVNQAYVIGTSTKVDISGVTLDKFDDKYFGKVAEKKKKKTEGEFFEAE 180
Query: 181 XXXXXXXXXXXXDDQKSVDAPLIKAIEAVPDLKAYLGARFSLRAGMKPHELVF 233
DDQK+VDA LIKAIEAVP+LK YLGARFSL+ GMKPHELVF
Sbjct: 181 KEEKKEIPQGKKDDQKAVDAALIKAIEAVPELKTYLGARFSLKQGMKPHELVF 233
>UNIPROTKB|F1Q424 [details] [associations]
symbol:RPL6 "60S ribosomal protein L6" species:9615 "Canis
lupus familiaris" [GO:0005840 "ribosome" evidence=IEA] [GO:0006412
"translation" evidence=IEA] [GO:0003735 "structural constituent of
ribosome" evidence=IEA] InterPro:IPR000915 InterPro:IPR005568
Pfam:PF01159 Pfam:PF03868 PROSITE:PS01170 GO:GO:0006412
GO:GO:0005840 GO:GO:0003735 Gene3D:2.30.30.30 InterPro:IPR014722
KO:K02934 PANTHER:PTHR10715 OMA:KYELTEQ
GeneTree:ENSGT00390000003682 CTD:6128 EMBL:AAEX03014681
EMBL:AAEX03026381 RefSeq:XP_534685.2 UniGene:Cfa.39611
Ensembl:ENSCAFT00000014100 Ensembl:ENSCAFT00000025489 GeneID:403691
KEGG:cfa:403691 NextBio:20817195 Uniprot:F1Q424
Length = 288
Score = 366 (133.9 bits), Expect = 4.7e-44, Sum P(2) = 4.7e-44
Identities = 85/176 (48%), Positives = 108/176 (61%)
Query: 64 FYPADDVKKPLVNKRKPKP-----TKLRASITPGTVLIILAGRFKGKRVVFLKQLPSGLL 118
+YP +DV + L++ K KP KLRASITPGT+LIIL GR +GKRVVFLKQL SGLL
Sbjct: 115 YYPTEDVPRKLLSHGK-KPFSQHVRKLRASITPGTILIILTGRHRGKRVVFLKQLSSGLL 173
Query: 119 LVSGPFKINGVPLRRVNQSYVIGTSTKVDISGVNVDK-FDDKYFAKEVXXXXXXXXXXXX 177
LV+GP +N VPLRR +Q +VI TSTK+DIS V + K D YF K+
Sbjct: 174 LVTGPLALNRVPLRRTHQKFVIATSTKIDISSVKIPKHLTDAYFKKKKLRKPRHQEGEIF 233
Query: 178 XXXXXXXXXXXXXXXDDQKSVDAPLIKAIEAVPDLKAYLGARFSLRAGMKPHELVF 233
D QK+VD+ ++ I+AVP L+ YL + FSL G+ PH+LVF
Sbjct: 234 DTEKEKYEITEQRKVD-QKAVDSQILPKIKAVPQLQGYLRSVFSLTNGVYPHKLVF 288
Score = 115 (45.5 bits), Expect = 4.7e-44, Sum P(2) = 4.7e-44
Identities = 20/36 (55%), Positives = 28/36 (77%)
Query: 3 PKQGKPRVSRNPELIRGIGKFSRSKMYHKRGLWAIK 38
PK+GKP SRNP L+RGIG++SRS MY ++ ++ K
Sbjct: 37 PKKGKPHCSRNPVLVRGIGRYSRSAMYSRKAMYKRK 72
>MGI|MGI:108057 [details] [associations]
symbol:Rpl6 "ribosomal protein L6" species:10090 "Mus
musculus" [GO:0003735 "structural constituent of ribosome"
evidence=IEA] [GO:0005622 "intracellular" evidence=IEA] [GO:0005634
"nucleus" evidence=ISA] [GO:0005730 "nucleolus" evidence=ISA]
[GO:0005737 "cytoplasm" evidence=ISA] [GO:0005840 "ribosome"
evidence=IEA] [GO:0006412 "translation" evidence=IEA] [GO:0022625
"cytosolic large ribosomal subunit" evidence=ISO] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] InterPro:IPR000915
InterPro:IPR005568 Pfam:PF01159 Pfam:PF03868 PROSITE:PS01170
MGI:MGI:108057 GO:GO:0005737 GO:GO:0005730 GO:GO:0006412
GO:GO:0005840 GO:GO:0003735 Gene3D:2.30.30.30 InterPro:IPR014722
eggNOG:COG2163 HOGENOM:HOG000207317 KO:K02934 PANTHER:PTHR10715
OMA:KYELTEQ CTD:6128 HOVERGEN:HBG002565 OrthoDB:EOG4W0XDZ
EMBL:AF374195 EMBL:BC062880 EMBL:X81987 IPI:IPI00313222 PIR:S55922
RefSeq:NP_035420.2 UniGene:Mm.262021 ProteinModelPortal:P47911
SMR:P47911 IntAct:P47911 STRING:P47911 PhosphoSite:P47911
PaxDb:P47911 PRIDE:P47911 Ensembl:ENSMUST00000031617 GeneID:19988
KEGG:mmu:19988 InParanoid:P47911 NextBio:297499 Bgee:P47911
CleanEx:MM_RPL6 Genevestigator:P47911 GermOnline:ENSMUSG00000029614
Uniprot:P47911
Length = 296
Score = 369 (135.0 bits), Expect = 5.9e-44, Sum P(2) = 5.9e-44
Identities = 87/176 (49%), Positives = 108/176 (61%)
Query: 64 FYPADDVKKPLVNKRKPKP-----TKLRASITPGTVLIILAGRFKGKRVVFLKQLPSGLL 118
+YP +DV + L++ K KP +LR+SITPGTVLIIL GR +GKRVVFLKQL SGLL
Sbjct: 123 YYPTEDVPRKLLSHGK-KPFSQHVRRLRSSITPGTVLIILTGRHRGKRVVFLKQLDSGLL 181
Query: 119 LVSGPFKINGVPLRRVNQSYVIGTSTKVDISGVNVDK-FDDKYFAKEVXXXXXXXXXXXX 177
LV+GP IN VPLRR +Q +VI TSTKVDIS V + K D YF K+
Sbjct: 182 LVTGPLVINRVPLRRTHQKFVIATSTKVDISDVKIPKHLTDAYFKKKQLRKPRHQEGEIF 241
Query: 178 XXXXXXXXXXXXXXXDDQKSVDAPLIKAIEAVPDLKAYLGARFSLRAGMKPHELVF 233
D QK+VD ++ I+AVP L+ YL ++FSL GM PH+LVF
Sbjct: 242 DTEKEKYEITEQRKAD-QKAVDLQILPKIKAVPQLQGYLRSQFSLTNGMYPHKLVF 296
Score = 111 (44.1 bits), Expect = 5.9e-44, Sum P(2) = 5.9e-44
Identities = 20/36 (55%), Positives = 27/36 (75%)
Query: 3 PKQGKPRVSRNPELIRGIGKFSRSKMYHKRGLWAIK 38
PK+ KP SRNP L+RGIG++SRS MY ++ L+ K
Sbjct: 44 PKKAKPHCSRNPVLVRGIGRYSRSAMYSRKALYKRK 79
Score = 38 (18.4 bits), Expect = 5.1e-05, Sum P(2) = 5.1e-05
Identities = 14/43 (32%), Positives = 23/43 (53%)
Query: 72 KPLVNKRKPKPTKLRASITPGTVLIILAGRFKGKRVVFLKQLP 114
K V K+K K K+ A++T + + G RVV L+++P
Sbjct: 84 KTKVEKKKKKE-KVLATVTK----TVGGDKNGGTRVVKLRKMP 121
>UNIPROTKB|Q2YGT9 [details] [associations]
symbol:RPL6 "60S ribosomal protein L6" species:9823 "Sus
scrofa" [GO:0022625 "cytosolic large ribosomal subunit"
evidence=IEA] [GO:0006412 "translation" evidence=IEA] [GO:0003735
"structural constituent of ribosome" evidence=IEA]
InterPro:IPR000915 InterPro:IPR005568 Pfam:PF01159 Pfam:PF03868
PROSITE:PS01170 GO:GO:0006412 GO:GO:0003735 Gene3D:2.30.30.30
InterPro:IPR014722 GO:GO:0022625 eggNOG:COG2163 KO:K02934
PANTHER:PTHR10715 OMA:KYELTEQ GeneTree:ENSGT00390000003682 CTD:6128
HOVERGEN:HBG002565 EMBL:AY735452 RefSeq:NP_001038007.1
UniGene:Ssc.1062 UniGene:Ssc.86910 ProteinModelPortal:Q2YGT9
PRIDE:Q2YGT9 Ensembl:ENSSSCT00000024558 GeneID:733592
KEGG:ssc:733592 Uniprot:Q2YGT9
Length = 284
Score = 369 (135.0 bits), Expect = 7.6e-44, Sum P(2) = 7.6e-44
Identities = 83/176 (47%), Positives = 110/176 (62%)
Query: 64 FYPADDVKKPLVNKRKPKP-----TKLRASITPGTVLIILAGRFKGKRVVFLKQLPSGLL 118
+YP +DV + L++ K KP KLRASITPGT+LIIL GR +GKRV+FLKQL SGLL
Sbjct: 111 YYPTEDVPRKLLSHGK-KPFSKHVRKLRASITPGTILIILTGRHRGKRVIFLKQLSSGLL 169
Query: 119 LVSGPFKINGVPLRRVNQSYVIGTSTKVDISGVNV-DKFDDKYFAKEVXXXXXXXXXXXX 177
LV+GP +N VPLRR +Q +VI TSTK+DISGV + + D YF K+
Sbjct: 170 LVTGPLSLNRVPLRRTHQKFVIATSTKIDISGVKIPEHLTDAYFKKKKLRKPRHQEGEIF 229
Query: 178 XXXXXXXXXXXXXXXDDQKSVDAPLIKAIEAVPDLKAYLGARFSLRAGMKPHELVF 233
D QK+VD+ +++ I+AVP L+ YL + F+L G+ PH+LVF
Sbjct: 230 DTEKEKYEISEQRKVD-QKAVDSQILRRIKAVPQLQGYLRSVFALTNGIYPHKLVF 284
Score = 110 (43.8 bits), Expect = 7.6e-44, Sum P(2) = 7.6e-44
Identities = 20/35 (57%), Positives = 27/35 (77%)
Query: 4 KQGKPRVSRNPELIRGIGKFSRSKMYHKRGLWAIK 38
K+GKP SRNP L+RGIG++SRS MY ++ L+ K
Sbjct: 34 KKGKPHCSRNPVLVRGIGRYSRSAMYSRKALYKRK 68
>UNIPROTKB|Q58DQ3 [details] [associations]
symbol:RPL6 "60S ribosomal protein L6" species:9913 "Bos
taurus" [GO:0005840 "ribosome" evidence=IEA] [GO:0006412
"translation" evidence=IEA] [GO:0003735 "structural constituent of
ribosome" evidence=IEA] InterPro:IPR000915 InterPro:IPR005568
Pfam:PF01159 Pfam:PF03868 PROSITE:PS01170 GO:GO:0006412
GO:GO:0005840 GO:GO:0003735 Gene3D:2.30.30.30 InterPro:IPR014722
eggNOG:COG2163 HOGENOM:HOG000207317 KO:K02934 PANTHER:PTHR10715
OMA:KYELTEQ GeneTree:ENSGT00390000003682 EMBL:BT021543
EMBL:BT021544 EMBL:AY911360 EMBL:BC133430 IPI:IPI00717048
RefSeq:NP_001026926.1 UniGene:Bt.62205 ProteinModelPortal:Q58DQ3
STRING:Q58DQ3 PRIDE:Q58DQ3 Ensembl:ENSBTAT00000033359 GeneID:511051
KEGG:bta:511051 CTD:6128 HOVERGEN:HBG002565 InParanoid:Q58DQ3
OrthoDB:EOG4W0XDZ NextBio:20869748 Uniprot:Q58DQ3
Length = 287
Score = 366 (133.9 bits), Expect = 1.6e-43, Sum P(2) = 1.6e-43
Identities = 83/176 (47%), Positives = 110/176 (62%)
Query: 64 FYPADDVKKPLVNKRKPKP-----TKLRASITPGTVLIILAGRFKGKRVVFLKQLPSGLL 118
+YP +DV + L++ K KP KLRASITPGT+LIIL GR +GKRVVFLKQL SGLL
Sbjct: 114 YYPTEDVPRKLLSHGK-KPFSKHVRKLRASITPGTILIILTGRHRGKRVVFLKQLGSGLL 172
Query: 119 LVSGPFKINGVPLRRVNQSYVIGTSTKVDISGVNV-DKFDDKYFAKEVXXXXXXXXXXXX 177
LV+GP +N VPLRR +Q +VI TSTK+DISGV + + D YF K+
Sbjct: 173 LVTGPLSLNRVPLRRTHQKFVIATSTKIDISGVKIPEHLTDTYFKKKKLRKPRHQEGEIF 232
Query: 178 XXXXXXXXXXXXXXXDDQKSVDAPLIKAIEAVPDLKAYLGARFSLRAGMKPHELVF 233
D QK+VD+ +++ I+AVP L+ YL + F+L G+ PH++VF
Sbjct: 233 DTEREKYEITEQRKVD-QKAVDSQILRRIKAVPQLQGYLRSVFALTNGIYPHKVVF 287
Score = 110 (43.8 bits), Expect = 1.6e-43, Sum P(2) = 1.6e-43
Identities = 20/35 (57%), Positives = 27/35 (77%)
Query: 4 KQGKPRVSRNPELIRGIGKFSRSKMYHKRGLWAIK 38
K+GKP SRNP L+RGIG++SRS MY ++ L+ K
Sbjct: 37 KKGKPHCSRNPVLVRGIGRYSRSAMYSRKALYKRK 71
>UNIPROTKB|Q02878 [details] [associations]
symbol:RPL6 "60S ribosomal protein L6" species:9606 "Homo
sapiens" [GO:0006412 "translation" evidence=NAS;TAS] [GO:0003735
"structural constituent of ribosome" evidence=NAS] [GO:0022625
"cytosolic large ribosomal subunit" evidence=IDA] [GO:0003677 "DNA
binding" evidence=TAS] [GO:0003723 "RNA binding" evidence=TAS]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=TAS] [GO:0000184 "nuclear-transcribed mRNA catabolic
process, nonsense-mediated decay" evidence=TAS] [GO:0005829
"cytosol" evidence=TAS] [GO:0006413 "translational initiation"
evidence=TAS] [GO:0006414 "translational elongation" evidence=TAS]
[GO:0006415 "translational termination" evidence=TAS] [GO:0006614
"SRP-dependent cotranslational protein targeting to membrane"
evidence=TAS] [GO:0010467 "gene expression" evidence=TAS]
[GO:0016032 "viral reproduction" evidence=TAS] [GO:0016070 "RNA
metabolic process" evidence=TAS] [GO:0016071 "mRNA metabolic
process" evidence=TAS] [GO:0019058 "viral infectious cycle"
evidence=TAS] [GO:0019083 "viral transcription" evidence=TAS]
[GO:0044267 "cellular protein metabolic process" evidence=TAS]
Reactome:REACT_71 Reactome:REACT_21257 Reactome:REACT_17015
InterPro:IPR000915 InterPro:IPR005568 Pfam:PF01159 Pfam:PF03868
PROSITE:PS01170 Reactome:REACT_116125 GO:GO:0000184 GO:GO:0006355
GO:GO:0003677 GO:GO:0006413 GO:GO:0003723 GO:GO:0003735
Gene3D:2.30.30.30 InterPro:IPR014722 GO:GO:0006415 GO:GO:0006414
Reactome:REACT_1762 GO:GO:0006614 GO:GO:0022625 GO:GO:0019083
eggNOG:COG2163 KO:K02934 PANTHER:PTHR10715 OMA:KYELTEQ CTD:6128
HOVERGEN:HBG002565 OrthoDB:EOG4W0XDZ EMBL:X69391 EMBL:D17554
EMBL:AB042820 EMBL:BC004138 EMBL:BC020679 EMBL:BC032299
EMBL:BC071912 EMBL:BC104824 EMBL:BC104826 EMBL:S71022
IPI:IPI00790342 PIR:I51803 PIR:S33714 RefSeq:NP_000961.2
RefSeq:NP_001019833.1 UniGene:Hs.546283 UniGene:Hs.703523
ProteinModelPortal:Q02878 SMR:Q02878 DIP:DIP-27547N IntAct:Q02878
MINT:MINT-1159780 STRING:Q02878 PhosphoSite:Q02878 DMDM:1350762
SWISS-2DPAGE:Q02878 PaxDb:Q02878 PRIDE:Q02878 DNASU:6128
Ensembl:ENST00000202773 Ensembl:ENST00000424576 GeneID:6128
KEGG:hsa:6128 UCSC:uc001ttu.3 GeneCards:GC12M112842
H-InvDB:HIX0164072 HGNC:HGNC:10362 MIM:603703 neXtProt:NX_Q02878
PharmGKB:PA34758 InParanoid:Q02878 PhylomeDB:Q02878 ChiTaRS:RPL6
GenomeRNAi:6128 NextBio:23799 ArrayExpress:Q02878 Bgee:Q02878
CleanEx:HS_RPL6 Genevestigator:Q02878 GermOnline:ENSG00000089009
Uniprot:Q02878
Length = 288
Score = 361 (132.1 bits), Expect = 1.6e-43, Sum P(2) = 1.6e-43
Identities = 83/176 (47%), Positives = 108/176 (61%)
Query: 64 FYPADDVKKPLVNKRKPKP-----TKLRASITPGTVLIILAGRFKGKRVVFLKQLPSGLL 118
+YP +DV + L++ K KP KLRASITPGT+LIIL GR +GKRVVFLKQL SGLL
Sbjct: 115 YYPTEDVPRKLLSHGK-KPFSQHVRKLRASITPGTILIILTGRHRGKRVVFLKQLASGLL 173
Query: 119 LVSGPFKINGVPLRRVNQSYVIGTSTKVDISGVNVDK-FDDKYFAKEVXXXXXXXXXXXX 177
LV+GP +N VPLRR +Q +VI TSTK+DIS V + K D YF K+
Sbjct: 174 LVTGPLVLNRVPLRRTHQKFVIATSTKIDISNVKIPKHLTDAYFKKKKLRKPRHQEGEIF 233
Query: 178 XXXXXXXXXXXXXXXDDQKSVDAPLIKAIEAVPDLKAYLGARFSLRAGMKPHELVF 233
D QK+VD+ ++ I+A+P L+ YL + F+L G+ PH+LVF
Sbjct: 234 DTEKEKYEITEQRKID-QKAVDSQILPKIKAIPQLQGYLRSVFALTNGIYPHKLVF 288
Score = 115 (45.5 bits), Expect = 1.6e-43, Sum P(2) = 1.6e-43
Identities = 20/36 (55%), Positives = 28/36 (77%)
Query: 3 PKQGKPRVSRNPELIRGIGKFSRSKMYHKRGLWAIK 38
PK+GKP SRNP L+RGIG++SRS MY ++ ++ K
Sbjct: 37 PKKGKPHCSRNPVLVRGIGRYSRSAMYSRKAMYKRK 72
>RGD|619826 [details] [associations]
symbol:Rpl6 "ribosomal protein L6" species:10116 "Rattus
norvegicus" [GO:0003735 "structural constituent of ribosome"
evidence=IEA] [GO:0005840 "ribosome" evidence=IEA] [GO:0006412
"translation" evidence=IEA] InterPro:IPR000915 InterPro:IPR005568
Pfam:PF01159 Pfam:PF03868 PROSITE:PS01170 RGD:619826 GO:GO:0006412
GO:GO:0005840 GO:GO:0003735 Gene3D:2.30.30.30 InterPro:IPR014722
eggNOG:COG2163 HOGENOM:HOG000207317 KO:K02934 PANTHER:PTHR10715
CTD:6128 HOVERGEN:HBG002565 OrthoDB:EOG4W0XDZ EMBL:X87107
EMBL:BC078761 EMBL:BC097295 EMBL:S71021 IPI:IPI00390343 PIR:S11416
PIR:T50782 RefSeq:NP_446423.2 UniGene:Rn.232089 UniGene:Rn.2660
ProteinModelPortal:P21533 IntAct:P21533 STRING:P21533 PRIDE:P21533
GeneID:117042 KEGG:rno:117042 UCSC:RGD:619826 NextBio:619851
ArrayExpress:P21533 Genevestigator:P21533
GermOnline:ENSRNOG00000025936 Uniprot:P21533
Length = 298
Score = 368 (134.6 bits), Expect = 8.5e-43, Sum P(2) = 8.5e-43
Identities = 86/176 (48%), Positives = 109/176 (61%)
Query: 64 FYPADDVKKPLVNKRKPKP-----TKLRASITPGTVLIILAGRFKGKRVVFLKQLPSGLL 118
+YP +DV + L++ K KP +LR+SITPGTVLIIL GR +GKRVVFLKQL SGLL
Sbjct: 125 YYPTEDVPRKLLSHGK-KPFSQHVRRLRSSITPGTVLIILTGRHRGKRVVFLKQLGSGLL 183
Query: 119 LVSGPFKINGVPLRRVNQSYVIGTSTKVDISGVNVDK-FDDKYFAKEVXXXXXXXXXXXX 177
LV+GP +N VPLRR +Q +VI TSTKVDIS V + K D YF K+
Sbjct: 184 LVTGPLALNRVPLRRTHQKFVIATSTKVDISKVKIPKHLTDAYFKKKPLRKPRHQEGEIF 243
Query: 178 XXXXXXXXXXXXXXXDDQKSVDAPLIKAIEAVPDLKAYLGARFSLRAGMKPHELVF 233
D QK+VD+ ++ I+AVP L+ YL ++FSL GM PH+LVF
Sbjct: 244 DTEKEKYEITEQRKAD-QKAVDSQILPKIKAVPQLQGYLRSQFSLTNGMYPHKLVF 298
Score = 101 (40.6 bits), Expect = 8.5e-43, Sum P(2) = 8.5e-43
Identities = 18/35 (51%), Positives = 26/35 (74%)
Query: 4 KQGKPRVSRNPELIRGIGKFSRSKMYHKRGLWAIK 38
++ KP SRNP L+RGIG++SRS MY ++ L+ K
Sbjct: 47 RKSKPHCSRNPVLVRGIGRYSRSAMYSRKALYKRK 81
>UNIPROTKB|F1LQS3 [details] [associations]
symbol:Rpl6 "60S ribosomal protein L6" species:10116
"Rattus norvegicus" [GO:0003735 "structural constituent of
ribosome" evidence=IEA] [GO:0005840 "ribosome" evidence=IEA]
[GO:0006412 "translation" evidence=IEA] InterPro:IPR000915
InterPro:IPR005568 Pfam:PF01159 Pfam:PF03868 PROSITE:PS01170
RGD:619826 GO:GO:0006412 GO:GO:0005840 GO:GO:0003735
Gene3D:2.30.30.30 InterPro:IPR014722 PANTHER:PTHR10715 OMA:KYELTEQ
GeneTree:ENSGT00390000003682 IPI:IPI00231609 PRIDE:F1LQS3
Ensembl:ENSRNOT00000050204 ArrayExpress:F1LQS3 Uniprot:F1LQS3
Length = 298
Score = 368 (134.6 bits), Expect = 8.5e-43, Sum P(2) = 8.5e-43
Identities = 86/176 (48%), Positives = 109/176 (61%)
Query: 64 FYPADDVKKPLVNKRKPKP-----TKLRASITPGTVLIILAGRFKGKRVVFLKQLPSGLL 118
+YP +DV + L++ K KP +LR+SITPGTVLIIL GR +GKRVVFLKQL SGLL
Sbjct: 125 YYPTEDVPRKLLSHGK-KPFSQHVRRLRSSITPGTVLIILTGRHRGKRVVFLKQLGSGLL 183
Query: 119 LVSGPFKINGVPLRRVNQSYVIGTSTKVDISGVNVDK-FDDKYFAKEVXXXXXXXXXXXX 177
LV+GP +N VPLRR +Q +VI TSTKVDIS V + K D YF K+
Sbjct: 184 LVTGPLALNRVPLRRTHQKFVIATSTKVDISKVKIPKHLTDAYFKKKPLRKPRHQEGEIF 243
Query: 178 XXXXXXXXXXXXXXXDDQKSVDAPLIKAIEAVPDLKAYLGARFSLRAGMKPHELVF 233
D QK+VD+ ++ I+AVP L+ YL ++FSL GM PH+LVF
Sbjct: 244 DTEKEKYEITEQRKAD-QKAVDSQILPKIKAVPQLQGYLRSQFSLTNGMYPHKLVF 298
Score = 101 (40.6 bits), Expect = 8.5e-43, Sum P(2) = 8.5e-43
Identities = 18/35 (51%), Positives = 26/35 (74%)
Query: 4 KQGKPRVSRNPELIRGIGKFSRSKMYHKRGLWAIK 38
++ KP SRNP L+RGIG++SRS MY ++ L+ K
Sbjct: 47 RKSKPHCSRNPVLVRGIGRYSRSAMYSRKALYKRK 81
>UNIPROTKB|H7C5Y5 [details] [associations]
symbol:H7C5Y5 "60S ribosomal protein L6" species:10116
"Rattus norvegicus" [GO:0003735 "structural constituent of
ribosome" evidence=IEA] [GO:0005840 "ribosome" evidence=IEA]
[GO:0006412 "translation" evidence=IEA] InterPro:IPR000915
InterPro:IPR005568 Pfam:PF01159 Pfam:PF03868 PROSITE:PS01170
GO:GO:0006412 GO:GO:0005840 GO:GO:0003735 Gene3D:2.30.30.30
InterPro:IPR014722 PANTHER:PTHR10715 GeneTree:ENSGT00390000003682
Ensembl:ENSRNOT00000034951 Uniprot:H7C5Y5
Length = 297
Score = 368 (134.6 bits), Expect = 8.5e-43, Sum P(2) = 8.5e-43
Identities = 86/176 (48%), Positives = 109/176 (61%)
Query: 64 FYPADDVKKPLVNKRKPKP-----TKLRASITPGTVLIILAGRFKGKRVVFLKQLPSGLL 118
+YP +DV + L++ K KP +LR+SITPGTVLIIL GR +GKRVVFLKQL SGLL
Sbjct: 124 YYPTEDVPRKLLSHGK-KPFSQHVRRLRSSITPGTVLIILTGRHRGKRVVFLKQLGSGLL 182
Query: 119 LVSGPFKINGVPLRRVNQSYVIGTSTKVDISGVNVDK-FDDKYFAKEVXXXXXXXXXXXX 177
LV+GP +N VPLRR +Q +VI TSTKVDIS V + K D YF K+
Sbjct: 183 LVTGPLALNRVPLRRTHQKFVIATSTKVDISKVKIPKHLTDAYFKKKPLRKPRHQEGEIF 242
Query: 178 XXXXXXXXXXXXXXXDDQKSVDAPLIKAIEAVPDLKAYLGARFSLRAGMKPHELVF 233
D QK+VD+ ++ I+AVP L+ YL ++FSL GM PH+LVF
Sbjct: 243 DTEKEKYEITEQRKAD-QKAVDSQILPKIKAVPQLQGYLRSQFSLTNGMYPHKLVF 297
Score = 101 (40.6 bits), Expect = 8.5e-43, Sum P(2) = 8.5e-43
Identities = 18/35 (51%), Positives = 26/35 (74%)
Query: 4 KQGKPRVSRNPELIRGIGKFSRSKMYHKRGLWAIK 38
++ KP SRNP L+RGIG++SRS MY ++ L+ K
Sbjct: 46 RKSKPHCSRNPVLVRGIGRYSRSAMYSRKALYKRK 80
>UNIPROTKB|Q8UWG7 [details] [associations]
symbol:RPL6 "60S ribosomal protein L6" species:9031 "Gallus
gallus" [GO:0003735 "structural constituent of ribosome"
evidence=IEA] [GO:0006412 "translation" evidence=IEA] [GO:0022625
"cytosolic large ribosomal subunit" evidence=IEA]
InterPro:IPR000915 InterPro:IPR005568 Pfam:PF01159 Pfam:PF03868
PROSITE:PS01170 EMBL:AY032864 GO:GO:0006412 GO:GO:0003735
Gene3D:2.30.30.30 InterPro:IPR014722 GO:GO:0022625 eggNOG:COG2163
HOGENOM:HOG000207317 KO:K02934 PANTHER:PTHR10715 OMA:KYELTEQ
GeneTree:ENSGT00390000003682 CTD:6128 HOVERGEN:HBG002565
OrthoDB:EOG4W0XDZ EMBL:AADN02034946 EMBL:AADN02034947
IPI:IPI00579078 RefSeq:NP_989483.1 UniGene:Gga.3486 STRING:Q8UWG7
Ensembl:ENSGALT00000007692 GeneID:373957 KEGG:gga:373957
InParanoid:Q8UWG7 NextBio:20813488 Uniprot:Q8UWG7
Length = 298
Score = 366 (133.9 bits), Expect = 2.5e-41, Sum P(2) = 2.5e-41
Identities = 83/175 (47%), Positives = 108/175 (61%)
Query: 64 FYPADDVKKPLVNK-RKP---KPTKLRASITPGTVLIILAGRFKGKRVVFLKQLPSGLLL 119
+YP +DV + L++ +KP +LRASITPGTVLI+L GR +GKRVVFLKQL +GLLL
Sbjct: 125 YYPTEDVPRKLLSHGKKPFSQHKRRLRASITPGTVLILLTGRHRGKRVVFLKQLGTGLLL 184
Query: 120 VSGPFKINGVPLRRVNQSYVIGTSTKVDISGVNVDK-FDDKYFAKEVXXXXXXXXXXXXX 178
V+GP +N VPLRR +Q +VI TSTKVDISGV + K D YF K+
Sbjct: 185 VTGPLAVNRVPLRRAHQKFVIATSTKVDISGVKIPKHLTDAYFKKKKLRKPKHQEGEIFD 244
Query: 179 XXXXXXXXXXXXXXDDQKSVDAPLIKAIEAVPDLKAYLGARFSLRAGMKPHELVF 233
D QK+VD+ ++ I+ VP L+ YL + FSL G+ PH+LVF
Sbjct: 245 TEKEKYEITEQRKTD-QKAVDSQILARIKKVPQLRGYLRSTFSLSNGVYPHKLVF 298
Score = 89 (36.4 bits), Expect = 2.5e-41, Sum P(2) = 2.5e-41
Identities = 19/35 (54%), Positives = 23/35 (65%)
Query: 4 KQGKPRVSRNPELIRGIGKFSRSKMYHKRGLWAIK 38
K K SRNP L RGIGK+SRS MY ++ L+ K
Sbjct: 48 KPKKYHASRNPVLARGIGKYSRSAMYARKALYKRK 82
>UNIPROTKB|G3N2R1 [details] [associations]
symbol:G3N2R1 "60S ribosomal protein L6" species:9913 "Bos
taurus" [GO:0005840 "ribosome" evidence=IEA] [GO:0006412
"translation" evidence=IEA] [GO:0003735 "structural constituent of
ribosome" evidence=IEA] InterPro:IPR000915 InterPro:IPR005568
Pfam:PF01159 Pfam:PF03868 PROSITE:PS01170 GO:GO:0006412
GO:GO:0005840 GO:GO:0003735 Gene3D:2.30.30.30 InterPro:IPR014722
PANTHER:PTHR10715 GeneTree:ENSGT00390000003682 EMBL:DAAA02039957
ProteinModelPortal:G3N2R1 Ensembl:ENSBTAT00000049290 OMA:INDEYFR
NextBio:20925613 Uniprot:G3N2R1
Length = 287
Score = 345 (126.5 bits), Expect = 2.5e-41, Sum P(2) = 2.5e-41
Identities = 80/176 (45%), Positives = 107/176 (60%)
Query: 64 FYPADDVKKPLVNKRKPKP-----TKLRASITPGTVLIILAGRFKGKRVVFLKQLPSGLL 118
+YP +DV + L++ K KP KLRA ITPGT+LIIL G +GKRVVFLKQL SGLL
Sbjct: 114 YYPTEDVPRKLLSHGK-KPFSKHVRKLRAIITPGTILIILTGCHRGKRVVFLKQLGSGLL 172
Query: 119 LVSGPFKINGVPLRRVNQSYVIGTSTKVDISGVNV-DKFDDKYFAKEVXXXXXXXXXXXX 177
LV+GP +N VPLRR +Q +VI TSTK+DIS V + + D YF K+
Sbjct: 173 LVTGPLSLNQVPLRRTHQKFVIATSTKIDISDVKIPEHLTDTYFKKKKLLKPRHQEGEIF 232
Query: 178 XXXXXXXXXXXXXXXDDQKSVDAPLIKAIEAVPDLKAYLGARFSLRAGMKPHELVF 233
D QK+VD+ +++ I+AVP L+ YL + F+L G+ PH++VF
Sbjct: 233 DTEREKYEITEQRKVD-QKAVDSQILRRIKAVPQLQGYLRSVFALTNGIYPHKVVF 287
Score = 110 (43.8 bits), Expect = 2.5e-41, Sum P(2) = 2.5e-41
Identities = 20/35 (57%), Positives = 27/35 (77%)
Query: 4 KQGKPRVSRNPELIRGIGKFSRSKMYHKRGLWAIK 38
K+GKP SRNP L+RGIG++SRS MY ++ L+ K
Sbjct: 37 KKGKPHCSRNPVLVRGIGRYSRSAMYSRKALYKRK 71
>UNIPROTKB|J9PA17 [details] [associations]
symbol:J9PA17 "60S ribosomal protein L6" species:9615
"Canis lupus familiaris" [GO:0005840 "ribosome" evidence=IEA]
[GO:0006412 "translation" evidence=IEA] [GO:0003735 "structural
constituent of ribosome" evidence=IEA] InterPro:IPR000915
InterPro:IPR005568 Pfam:PF01159 Pfam:PF03868 PROSITE:PS01170
GO:GO:0006412 GO:GO:0005840 GO:GO:0003735 Gene3D:2.30.30.30
InterPro:IPR014722 PANTHER:PTHR10715 GeneTree:ENSGT00390000003682
EMBL:AAEX03016401 Ensembl:ENSCAFT00000012482 OMA:YKASATR
Uniprot:J9PA17
Length = 289
Score = 348 (127.6 bits), Expect = 8.4e-41, Sum P(2) = 8.4e-41
Identities = 82/175 (46%), Positives = 105/175 (60%)
Query: 64 FYPADDVK-KPLVNKRKP---KPTKLRASITPGTVLIILAGRFKGKRVVFLKQLPSGLLL 119
+ P +DV K L + RKP + KLRASITPGT+LI L GR +GKRVVFLKQL SGLLL
Sbjct: 116 YCPTEDVPCKLLSHGRKPFSQRVRKLRASITPGTILITLTGRHRGKRVVFLKQLSSGLLL 175
Query: 120 VSGPFKINGVPLRRVNQSYVIGTSTKVDISGVNVDK-FDDKYFAKEVXXXXXXXXXXXXX 178
V+ P +N VPLRR +Q +VI TSTK+D+S V + K D YF K+
Sbjct: 176 VTAPLALNRVPLRRTHQKFVIATSTKIDVSSVKIPKHLTDAYFKKKKLHKPRHREGEIFD 235
Query: 179 XXXXXXXXXXXXXXDDQKSVDAPLIKAIEAVPDLKAYLGARFSLRAGMKPHELVF 233
D QK+VD+ ++ I+AVP L+ YL + FSL G+ PH+LVF
Sbjct: 236 TEKEKYEITEQRKVD-QKAVDSQILPKIKAVPQLQGYLPSVFSLTNGVYPHKLVF 289
Score = 102 (41.0 bits), Expect = 8.4e-41, Sum P(2) = 8.4e-41
Identities = 23/44 (52%), Positives = 29/44 (65%)
Query: 3 PKQGKPRVSRNPELIRGIGKFS------RSKMYHKRGLWAIKAK 40
PK+GKP SR+P L+RGIG+FS R MY KR WA K++
Sbjct: 38 PKKGKPHCSRSPVLVRGIGRFSPWAVYSRKAMY-KRKYWAAKSR 80
>ZFIN|ZDB-GENE-030131-8671 [details] [associations]
symbol:rpl6 "ribosomal protein L6" species:7955
"Danio rerio" [GO:0003735 "structural constituent of ribosome"
evidence=IEA] [GO:0005622 "intracellular" evidence=IEA] [GO:0006412
"translation" evidence=IEA] [GO:0005840 "ribosome" evidence=IEA]
[GO:0009790 "embryo development" evidence=IMP] InterPro:IPR000915
InterPro:IPR005568 Pfam:PF01159 Pfam:PF03868
ZFIN:ZDB-GENE-030131-8671 GO:GO:0006412 GO:GO:0005840 GO:GO:0009790
GO:GO:0003735 Gene3D:2.30.30.30 InterPro:IPR014722 KO:K02934
PANTHER:PTHR10715 CTD:6128 HOVERGEN:HBG002565 EMBL:AY648833
IPI:IPI00481915 RefSeq:NP_001003844.1 UniGene:Dr.28231
ProteinModelPortal:Q6DRC6 STRING:Q6DRC6 PRIDE:Q6DRC6 GeneID:336727
KEGG:dre:336727 InParanoid:Q6DRC6 NextBio:20811876
ArrayExpress:Q6DRC6 Bgee:Q6DRC6 Uniprot:Q6DRC6
Length = 265
Score = 336 (123.3 bits), Expect = 6.5e-39, Sum P(2) = 6.5e-39
Identities = 78/175 (44%), Positives = 102/175 (58%)
Query: 64 FYPADDVKKPL----VNKRKPKPTKLRASITPGTVLIILAGRFKGKRVVFLKQLPSGLLL 119
+YP +DV++ L + KLR +IT GTVLI+L GR +GKRVVFLKQL SGLLL
Sbjct: 92 YYPTEDVRRKLRSHGIKAFSQHRRKLRKTITLGTVLIMLTGRHRGKRVVFLKQLDSGLLL 151
Query: 120 VSGPFKINGVPLRRVNQSYVIGTSTKVDISGVNVDK-FDDKYFAKEVXXXXXXXXXXXXX 178
V+GP IN VPLRR +Q + I T+TKVDISG+ + + D YF K+
Sbjct: 152 VTGPLAINRVPLRRAHQKFCIATNTKVDISGMKIPRTLTDSYFKKKKLRKPKHQEGEIFD 211
Query: 179 XXXXXXXXXXXXXXDDQKSVDAPLIKAIEAVPDLKAYLGARFSLRAGMKPHELVF 233
D QK+VD+ L+ I+ VP L+ YL + FSL G+ PH+LVF
Sbjct: 212 TEKEKYQLTEQRKAD-QKAVDSQLLPLIKKVPQLRGYLRSMFSLSNGVYPHKLVF 265
Score = 96 (38.9 bits), Expect = 6.5e-39, Sum P(2) = 6.5e-39
Identities = 18/37 (48%), Positives = 26/37 (70%)
Query: 4 KQGKPRVSRNPELIRGIGKFSRSKMYHKRGLWAIKAK 40
K + SRNPEL+RGIG++SRS M+ +R ++ K K
Sbjct: 8 KVARKHGSRNPELVRGIGRYSRSAMFARRAMYKRKTK 44
Score = 44 (20.5 bits), Expect = 0.00077, Sum P(2) = 0.00077
Identities = 15/47 (31%), Positives = 26/47 (55%)
Query: 71 KKPLVN-KRKPKPTKLRA-SITPGTVLIILAG-RFKGKRVVFLKQLP 114
K P+ ++K K K++ S P T + + G + G RVV L+++P
Sbjct: 44 KAPVTKVEKKIKEKKVKQKSKNPTTAIKTVGGDKNGGTRVVKLRKMP 90
>SGD|S000004440 [details] [associations]
symbol:RPL6B "Ribosomal 60S subunit protein L6B" species:4932
"Saccharomyces cerevisiae" [GO:0003735 "structural constituent of
ribosome" evidence=IEA;IDA] [GO:0006412 "translation" evidence=IEA]
[GO:0005840 "ribosome" evidence=IEA] [GO:0002181 "cytoplasmic
translation" evidence=IDA] [GO:0022625 "cytosolic large ribosomal
subunit" evidence=IDA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA] [GO:0003723
"RNA binding" evidence=IDA] [GO:0005622 "intracellular"
evidence=IEA] [GO:0000027 "ribosomal large subunit assembly"
evidence=IMP] InterPro:IPR000915 Pfam:PF01159 PROSITE:PS01170
SGD:S000004440 EMBL:BK006945 GO:GO:0003723 GO:GO:0003735
GO:GO:0002181 GO:GO:0000027 Gene3D:2.30.30.30 InterPro:IPR014722
EMBL:U22382 GO:GO:0022625 HOGENOM:HOG000207317 KO:K02934
OMA:VSGPFKV PANTHER:PTHR10715 GeneTree:ENSGT00390000003682
OrthoDB:EOG4T4H4S EMBL:D10226 PIR:S55970 RefSeq:NP_013553.1
ProteinModelPortal:P05739 SMR:P05739 DIP:DIP-4591N IntAct:P05739
MINT:MINT-490611 STRING:P05739 PeptideAtlas:P05739
EnsemblFungi:YLR448W GeneID:851169 KEGG:sce:YLR448W NextBio:967975
Genevestigator:P05739 GermOnline:YLR448W Uniprot:P05739
Length = 176
Score = 409 (149.0 bits), Expect = 3.4e-38, P = 3.4e-38
Identities = 87/170 (51%), Positives = 107/170 (62%)
Query: 64 FYPADDVKKPLVNKRKPKPTKLRASITPGTVLIILAGRFKGKRVVFLKQLPSGLLLVSGP 123
+YP++DV P ++ +P KLRAS+ PGTVLI+LAGRF+GKRVV+LK L LLV+GP
Sbjct: 9 WYPSEDVAAPKKTRKAVRPQKLRASLVPGTVLILLAGRFRGKRVVYLKHLEDNTLLVTGP 68
Query: 124 FKINGVPLRRVNQSYVIGTSTKVDISGVNVDKFDDKYFAKEVXXXXXXXXXXXXXXXXXX 183
FK+NGVPLRRVN YVI TSTKV + GVNV+KF+ +YFAKE
Sbjct: 69 FKVNGVPLRRVNARYVIATSTKVSVEGVNVEKFNVEYFAKE--KLTKKEKKEANLFPEQQ 126
Query: 184 XXXXXXXXXDDQKSVDAPLIKAIEAVPDLKAYLGARFSLRAGMKPHELVF 233
+DQK VD L+ I+ P LK YL A FSL+ G KPH L F
Sbjct: 127 TKEIKTERVEDQKVVDKALLAEIKKTPLLKQYLSASFSLKNGDKPHLLKF 176
>SGD|S000004538 [details] [associations]
symbol:RPL6A "Ribosomal 60S subunit protein L6A" species:4932
"Saccharomyces cerevisiae" [GO:0005840 "ribosome" evidence=IEA]
[GO:0005622 "intracellular" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IDA] [GO:0002181 "cytoplasmic translation" evidence=IDA]
[GO:0003735 "structural constituent of ribosome" evidence=IEA;IDA]
[GO:0022625 "cytosolic large ribosomal subunit" evidence=IDA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA] [GO:0006412
"translation" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0000027 "ribosomal large subunit assembly" evidence=IMP]
InterPro:IPR000915 Pfam:PF01159 PROSITE:PS01170 SGD:S000004538
GO:GO:0003723 EMBL:BK006946 GO:GO:0003735 GO:GO:0002181 PDB:4B6A
PDBsum:4B6A EMBL:Z46373 GO:GO:0000027 Gene3D:2.30.30.30
InterPro:IPR014722 GO:GO:0022625 PDB:3IZS PDB:3O58 PDB:3O5H
PDB:3U5E PDB:3U5I PDBsum:3IZS PDBsum:3O58 PDBsum:3O5H PDBsum:3U5E
PDBsum:3U5I eggNOG:COG2163 HOGENOM:HOG000207317 KO:K02934
PANTHER:PTHR10715 EMBL:D10225 PIR:S28944 RefSeq:NP_013638.1
ProteinModelPortal:Q02326 SMR:Q02326 IntAct:Q02326
MINT:MINT-1325508 STRING:Q02326 PaxDb:Q02326 PeptideAtlas:Q02326
EnsemblFungi:YML073C GeneID:854902 KEGG:sce:YML073C
GeneTree:ENSGT00390000003682 OMA:VYLAARF OrthoDB:EOG4T4H4S
NextBio:977882 Genevestigator:Q02326 GermOnline:YML073C
Uniprot:Q02326
Length = 176
Score = 404 (147.3 bits), Expect = 1.1e-37, P = 1.1e-37
Identities = 87/170 (51%), Positives = 106/170 (62%)
Query: 64 FYPADDVKKPLVNKRKPKPTKLRASITPGTVLIILAGRFKGKRVVFLKQLPSGLLLVSGP 123
+YP++DV ++ +P KLRAS+ PGTVLI+LAGRF+GKRVV+LK L LL+SGP
Sbjct: 9 WYPSEDVAALKKTRKAARPQKLRASLVPGTVLILLAGRFRGKRVVYLKHLEDNTLLISGP 68
Query: 124 FKINGVPLRRVNQSYVIGTSTKVDISGVNVDKFDDKYFAKEVXXXXXXXXXXXXXXXXXX 183
FK+NGVPLRRVN YVI TSTKV + GVNV+KF+ +YFAKE
Sbjct: 69 FKVNGVPLRRVNARYVIATSTKVSVEGVNVEKFNVEYFAKE--KLTKKEKKEANLFPEQQ 126
Query: 184 XXXXXXXXXDDQKSVDAPLIKAIEAVPDLKAYLGARFSLRAGMKPHELVF 233
+DQK VD LI I+ P LK YL A FSL+ G KPH L F
Sbjct: 127 NKEIKAERVEDQKVVDKALIAEIKKTPLLKQYLSASFSLKNGDKPHMLKF 176
>ASPGD|ASPL0000060399 [details] [associations]
symbol:AN1166 species:162425 "Emericella nidulans"
[GO:0002181 "cytoplasmic translation" evidence=IEA] [GO:0000027
"ribosomal large subunit assembly" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0003735 "structural constituent of
ribosome" evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
[GO:0022625 "cytosolic large ribosomal subunit" evidence=IEA]
InterPro:IPR000915 Pfam:PF01159 EMBL:BN001308 GO:GO:0006412
GO:GO:0005840 GO:GO:0003735 Gene3D:2.30.30.30 InterPro:IPR014722
HOGENOM:HOG000207317 PANTHER:PTHR10715 OMA:EHINDAY
EnsemblFungi:CADANIAT00001460 Uniprot:C8VT28
Length = 198
Score = 379 (138.5 bits), Expect = 5.1e-35, P = 5.1e-35
Identities = 83/172 (48%), Positives = 105/172 (61%)
Query: 64 FYPADDVKKPLVNKRKPKPTKLRASITPGTVLIILAGRFKGKRVVFLKQLPSGLLLVSGP 123
+YP DD +P ++ +PTKLR S+ PGTVLI+LAGRF+GKRVV LK L G+LLV+GP
Sbjct: 25 WYPVDDESQPKKVRKAIRPTKLRESLQPGTVLILLAGRFRGKRVVLLKHLDQGVLLVTGP 84
Query: 124 FKINGVPLRRVNQSYVIGTSTKVDISGVN---VDKFDDK-YFAKEVXXXXXXXXXXXXXX 179
FKINGVPLRRVN YVI TST++DISGV+ ++K YF KE
Sbjct: 85 FKINGVPLRRVNARYVIATSTRIDISGVDSQTIEKVSAPGYFTKEKKNEKKTEEAFFKQG 144
Query: 180 XXXXXXXXXXXXXDDQKSVDAPLIKAIEAVPDLKAYLGARFSLRAGMKPHEL 231
DQK+VD ++ +I+ L +YL A FSLR G KPHE+
Sbjct: 145 EKPEKKVVASARASDQKAVDQSILASIKKEAFLGSYLAATFSLRNGDKPHEM 196
>WB|WBGene00004417 [details] [associations]
symbol:rpl-6 species:6239 "Caenorhabditis elegans"
[GO:0003735 "structural constituent of ribosome" evidence=IEA]
[GO:0005622 "intracellular" evidence=IEA] [GO:0005840 "ribosome"
evidence=IEA] [GO:0006412 "translation" evidence=IEA] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
[GO:0000003 "reproduction" evidence=IMP] [GO:0040007 "growth"
evidence=IMP] [GO:0002119 "nematode larval development"
evidence=IMP] [GO:0008340 "determination of adult lifespan"
evidence=IMP] [GO:0006915 "apoptotic process" evidence=IMP]
InterPro:IPR000915 Pfam:PF01159 PROSITE:PS01170 GO:GO:0008340
GO:GO:0009792 GO:GO:0040007 GO:GO:0006915 GO:GO:0002119
GO:GO:0006412 GO:GO:0000003 GO:GO:0005840 GO:GO:0003735
Gene3D:2.30.30.30 InterPro:IPR014722 EMBL:FO081317 eggNOG:COG2163
HOGENOM:HOG000207317 KO:K02934 OMA:VSGPFKV PANTHER:PTHR10715
GeneTree:ENSGT00390000003682 PIR:T16762 RefSeq:NP_498584.1
ProteinModelPortal:P47991 SMR:P47991 DIP:DIP-26565N IntAct:P47991
MINT:MINT-1063990 STRING:P47991 PaxDb:P47991 PRIDE:P47991
EnsemblMetazoa:R151.3.1 EnsemblMetazoa:R151.3.2
EnsemblMetazoa:R151.3.3 GeneID:176015 KEGG:cel:CELE_R151.3
UCSC:R151.3.1 CTD:176015 WormBase:R151.3 InParanoid:P47991
NextBio:890746 Uniprot:P47991
Length = 217
Score = 333 (122.3 bits), Expect = 1.0e-34, Sum P(2) = 1.0e-34
Identities = 75/158 (47%), Positives = 97/158 (61%)
Query: 81 KPTKLRASITPGTVLIILAGRFKGKRVVFLKQLP-SGLLLVSGPFKINGVPLRRVNQSYV 139
K LR ++TPGTVLI+LAGR KGKRVVFLKQLP SGLLLV+GP KING PLRR+ Q++V
Sbjct: 63 KTVTLRKTLTPGTVLIVLAGRHKGKRVVFLKQLPQSGLLLVTGPHKINGFPLRRIGQAFV 122
Query: 140 IGTSTKVDISGVNV-DKFDDKYFAKEVXXXXXXXXXXXXXXXXXXXXXXXXXXXDDQKSV 198
I TS KV++SGV + + +D+YF ++ D K+V
Sbjct: 123 IATSLKVNVSGVKIPEHINDEYFKRK---STAQKTGKNIFASGKTEYTVSEQRKKDIKTV 179
Query: 199 DAPLIKAIEAVPDLK---AYLGARFSLRAGMKPHELVF 233
DAP++ AI+ P+ K YLG RFSL PH++ F
Sbjct: 180 DAPILAAIKKHPEHKFLFGYLGTRFSLGKNQYPHKMQF 217
Score = 59 (25.8 bits), Expect = 1.0e-34, Sum P(2) = 1.0e-34
Identities = 13/33 (39%), Positives = 21/33 (63%)
Query: 1 MAPKQGKPRVSRNPELIRGIGKFSRSKMYHKRG 33
M K+ P +SRN +L G+ +FS S++ K+G
Sbjct: 1 MVGKRNLPVISRNFDLSPGVLRFSASRLRLKKG 33
>UNIPROTKB|P47991 [details] [associations]
symbol:rpl-6 "60S ribosomal protein L6" species:6239
"Caenorhabditis elegans" [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR000915 Pfam:PF01159 PROSITE:PS01170
GO:GO:0008340 GO:GO:0009792 GO:GO:0040007 GO:GO:0006915
GO:GO:0002119 GO:GO:0006412 GO:GO:0000003 GO:GO:0005840
GO:GO:0003735 Gene3D:2.30.30.30 InterPro:IPR014722 EMBL:FO081317
eggNOG:COG2163 HOGENOM:HOG000207317 KO:K02934 OMA:VSGPFKV
PANTHER:PTHR10715 GeneTree:ENSGT00390000003682 PIR:T16762
RefSeq:NP_498584.1 ProteinModelPortal:P47991 SMR:P47991
DIP:DIP-26565N IntAct:P47991 MINT:MINT-1063990 STRING:P47991
PaxDb:P47991 PRIDE:P47991 EnsemblMetazoa:R151.3.1
EnsemblMetazoa:R151.3.2 EnsemblMetazoa:R151.3.3 GeneID:176015
KEGG:cel:CELE_R151.3 UCSC:R151.3.1 CTD:176015 WormBase:R151.3
InParanoid:P47991 NextBio:890746 Uniprot:P47991
Length = 217
Score = 333 (122.3 bits), Expect = 1.0e-34, Sum P(2) = 1.0e-34
Identities = 75/158 (47%), Positives = 97/158 (61%)
Query: 81 KPTKLRASITPGTVLIILAGRFKGKRVVFLKQLP-SGLLLVSGPFKINGVPLRRVNQSYV 139
K LR ++TPGTVLI+LAGR KGKRVVFLKQLP SGLLLV+GP KING PLRR+ Q++V
Sbjct: 63 KTVTLRKTLTPGTVLIVLAGRHKGKRVVFLKQLPQSGLLLVTGPHKINGFPLRRIGQAFV 122
Query: 140 IGTSTKVDISGVNV-DKFDDKYFAKEVXXXXXXXXXXXXXXXXXXXXXXXXXXXDDQKSV 198
I TS KV++SGV + + +D+YF ++ D K+V
Sbjct: 123 IATSLKVNVSGVKIPEHINDEYFKRK---STAQKTGKNIFASGKTEYTVSEQRKKDIKTV 179
Query: 199 DAPLIKAIEAVPDLK---AYLGARFSLRAGMKPHELVF 233
DAP++ AI+ P+ K YLG RFSL PH++ F
Sbjct: 180 DAPILAAIKKHPEHKFLFGYLGTRFSLGKNQYPHKMQF 217
Score = 59 (25.8 bits), Expect = 1.0e-34, Sum P(2) = 1.0e-34
Identities = 13/33 (39%), Positives = 21/33 (63%)
Query: 1 MAPKQGKPRVSRNPELIRGIGKFSRSKMYHKRG 33
M K+ P +SRN +L G+ +FS S++ K+G
Sbjct: 1 MVGKRNLPVISRNFDLSPGVLRFSASRLRLKKG 33
>UNIPROTKB|F1LUV7 [details] [associations]
symbol:F1LUV7 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0003735 "structural constituent of
ribosome" evidence=IEA] [GO:0005840 "ribosome" evidence=IEA]
[GO:0006412 "translation" evidence=IEA] InterPro:IPR000915
InterPro:IPR005568 Pfam:PF01159 Pfam:PF03868 GO:GO:0006412
GO:GO:0005840 GO:GO:0003735 Gene3D:2.30.30.30 InterPro:IPR014722
PANTHER:PTHR10715 GeneTree:ENSGT00390000003682 IPI:IPI00359709
Ensembl:ENSRNOT00000033766 Uniprot:F1LUV7
Length = 286
Score = 234 (87.4 bits), Expect = 3.4e-34, Sum P(3) = 3.4e-34
Identities = 51/93 (54%), Positives = 65/93 (69%)
Query: 64 FYPADDVKKPLVNKRKPKPT---KLRASITPGTVLIILAGRFKGKRVVFLKQLPSGLLLV 120
+YP ++V K L KP +LR+ I PGTVLII+ GR +GKR+VFLKQL SGLL V
Sbjct: 121 YYPIEEVPKLLSRGTKPFSQHLRRLRSHIAPGTVLIIVTGRQRGKRMVFLKQLGSGLLFV 180
Query: 121 SGPFKINGVPLRRVNQSYVIGTSTKVDISGVNV 153
+GP ++ VPLRR +Q +VI TSTKV IS V +
Sbjct: 181 TGPLALDRVPLRRTHQKFVIATSTKVGISEVKI 213
Score = 92 (37.4 bits), Expect = 3.4e-34, Sum P(3) = 3.4e-34
Identities = 17/36 (47%), Positives = 24/36 (66%)
Query: 3 PKQGKPRVSRNPELIRGIGKFSRSKMYHKRGLWAIK 38
P+ GK SR P L+RGIG++S S M+ K+ L+ K
Sbjct: 42 PRNGKSHCSRTPVLVRGIGRYSGSSMFSKKALYKRK 77
Score = 71 (30.1 bits), Expect = 3.4e-34, Sum P(3) = 3.4e-34
Identities = 17/40 (42%), Positives = 25/40 (62%)
Query: 194 DQKSVDAPLIKAIEAVPDLKAYLGARFSLRAGMKPHELVF 233
DQ++VD ++ + V L YL ++FSL M PH+LVF
Sbjct: 248 DQETVDLQILPKSKDVAQL-GYLRSQFSLTNPMYPHKLVF 286
>POMBASE|SPCC622.18 [details] [associations]
symbol:rpl6 "60S ribosomal protein L6 (predicted)"
species:4896 "Schizosaccharomyces pombe" [GO:0002181 "cytoplasmic
translation" evidence=NAS] [GO:0003735 "structural constituent of
ribosome" evidence=ISO] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] [GO:0005829 "cytosol"
evidence=IDA] [GO:0006412 "translation" evidence=ISO] [GO:0022625
"cytosolic large ribosomal subunit" evidence=ISO] [GO:0042254
"ribosome biogenesis" evidence=ISO] InterPro:IPR000915 Pfam:PF01159
PROSITE:PS01170 PomBase:SPCC622.18 GO:GO:0005730 EMBL:CU329672
GenomeReviews:CU329672_GR GO:GO:0042254 GO:GO:0003735 GO:GO:0002181
Gene3D:2.30.30.30 InterPro:IPR014722 GO:GO:0022625 eggNOG:COG2163
HOGENOM:HOG000207317 KO:K02934 PANTHER:PTHR10715 OrthoDB:EOG4T4H4S
EMBL:AB001833 PIR:T41499 RefSeq:NP_588190.1
ProteinModelPortal:P79071 IntAct:P79071 STRING:P79071 PRIDE:P79071
EnsemblFungi:SPCC622.18.1 GeneID:2539372 KEGG:spo:SPCC622.18
OMA:RYSASIT NextBio:20800537 Uniprot:P79071
Length = 195
Score = 370 (135.3 bits), Expect = 4.6e-34, P = 4.6e-34
Identities = 80/171 (46%), Positives = 106/171 (61%)
Query: 64 FYPADDVKKPLVNKRKPKPTKLRASITPGTVLIILAGRFKGKRVVFLKQLPSGLLLVSGP 123
+YPA P ++ +PTKLRAS+ PGTV I+LAGRF+GKRVV L QL L+V+GP
Sbjct: 27 YYPAYRENVPKKARKAVRPTKLRASLAPGTVCILLAGRFRGKRVVVLSQLED-TLVVTGP 85
Query: 124 FKINGVPLRRVNQSYVIGTST-KVDISGVNVDKFDDKYFAKEVXXXXXXXXXXXXXXXXX 182
+K+NGVP+RRVN YVI TS K+D+SGV+V+KF YFAK+
Sbjct: 86 YKVNGVPIRRVNHRYVIATSAPKIDVSGVSVEKFTKAYFAKQKRSGPVKKDEAFFAENAP 145
Query: 183 XXXXXXXXXXDDQKSVDAPLIKAIEAVPDLKAYLGARFSLRAGMKPHELVF 233
D QK+VDA L+ AI+A+P++K YL A F+L G +PH + F
Sbjct: 146 KNALPAERIAD-QKAVDAKLLPAIKAIPNMKEYLAASFALSNGDRPHLMKF 195
>UNIPROTKB|F1M2R6 [details] [associations]
symbol:F1M2R6 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0003735 "structural constituent of
ribosome" evidence=IEA] [GO:0005840 "ribosome" evidence=IEA]
[GO:0006412 "translation" evidence=IEA] InterPro:IPR000915
InterPro:IPR005568 Pfam:PF01159 Pfam:PF03868 GO:GO:0006412
GO:GO:0005840 GO:GO:0003735 Gene3D:2.30.30.30 InterPro:IPR014722
PANTHER:PTHR10715 GeneTree:ENSGT00390000003682 OMA:FNFENIA
IPI:IPI00776960 PRIDE:F1M2R6 Ensembl:ENSRNOT00000055040
Uniprot:F1M2R6
Length = 230
Score = 243 (90.6 bits), Expect = 7.0e-34, Sum P(3) = 7.0e-34
Identities = 56/95 (58%), Positives = 67/95 (70%)
Query: 65 YPADDVKKPLVNK-RKP---KPTKLRASITPGTVLIILAGRFKGKRVVFLKQLPSGLLLV 120
YP DV + L++ +KP + +LR SITPGTVLIIL GR +GKR+VFLKQL SGLL V
Sbjct: 67 YPTKDVPRKLLSHGQKPFRQRVRRLRPSITPGTVLIILTGRHRGKRLVFLKQLGSGLLPV 126
Query: 121 SGPFKINGVPLRRVNQSYVIGTSTKVDISGVNVDK 155
+GPF +N VPLRR Q V TST+VDIS V K
Sbjct: 127 TGPFALNRVPLRRTRQKSVTTTSTQVDISEVKNTK 161
Score = 99 (39.9 bits), Expect = 7.0e-34, Sum P(3) = 7.0e-34
Identities = 19/40 (47%), Positives = 28/40 (70%)
Query: 194 DQKSVDAPLIKAIEAVPDLKAYLGARFSLRAGMKPHELVF 233
+QK+VD ++ I+AVP L+ YL ++FS+ GM PH VF
Sbjct: 191 EQKAVDPQILPKIKAVPQLQGYLRSQFSMTDGMYPHNPVF 230
Score = 52 (23.4 bits), Expect = 7.0e-34, Sum P(3) = 7.0e-34
Identities = 10/26 (38%), Positives = 18/26 (69%)
Query: 13 NPELIRGIGKFSRSKMYHKRGLWAIK 38
N L+RGIG++S+S M+ ++ + K
Sbjct: 1 NLVLLRGIGRYSQSAMHSRKASYKRK 26
>UNIPROTKB|G4MSC0 [details] [associations]
symbol:MGG_04444 "60S ribosomal protein L6" species:242507
"Magnaporthe oryzae 70-15" [GO:0043581 "mycelium development"
evidence=IEP] InterPro:IPR000915 Pfam:PF01159 PROSITE:PS01170
GO:GO:0006412 GO:GO:0005840 GO:GO:0003735 GO:GO:0043581
EMBL:CM001232 Gene3D:2.30.30.30 InterPro:IPR014722 KO:K02934
PANTHER:PTHR10715 RefSeq:XP_003713539.1 ProteinModelPortal:G4MSC0
EnsemblFungi:MGG_04444T0 GeneID:2677964 KEGG:mgr:MGG_04444
Uniprot:G4MSC0
Length = 202
Score = 367 (134.2 bits), Expect = 9.5e-34, P = 9.5e-34
Identities = 82/172 (47%), Positives = 99/172 (57%)
Query: 64 FYPADDVKKPLVNKRKPKPTKLRASITPGTVLIILAGRFKGKRVVFLKQLPSGLLLVSGP 123
+YPA D P ++ +P R S+ PGTVLI+LAGRF+GKRVV LK L G+LLV+GP
Sbjct: 29 WYPATDDNGPKAVRKSVRPWNPRKSLEPGTVLILLAGRFRGKRVVLLKNLDQGVLLVTGP 88
Query: 124 FKINGVPLRRVNQSYVIGTSTKVDISGVNVDKFDD----KYFAKEVXXXXXXXXXXXXXX 179
FKINGVPLRRVN YVI TS KVD+SGV+ K D+ KYF E
Sbjct: 89 FKINGVPLRRVNARYVIATSQKVDLSGVDTGKIDEVAAPKYFTAEKAKEKAGEEAFFKQG 148
Query: 180 XXXXXXXXXXXXXDDQKSVDAPLIKAIEAVPDLKAYLGARFSLRAGMKPHEL 231
DQK++D LI I+ V L +YL FSLR G KPHE+
Sbjct: 149 EKPEKKQVNSTRAADQKAIDKALIANIKKVEFLASYLATSFSLRKGDKPHEM 200
>UNIPROTKB|F1LVJ5 [details] [associations]
symbol:F1LVJ5 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0003735 "structural constituent of
ribosome" evidence=IEA] [GO:0005840 "ribosome" evidence=IEA]
[GO:0006412 "translation" evidence=IEA] InterPro:IPR000915
InterPro:IPR005568 Pfam:PF01159 Pfam:PF03868 GO:GO:0006412
GO:GO:0005840 GO:GO:0003735 Gene3D:2.30.30.30 InterPro:IPR014722
PANTHER:PTHR10715 GeneTree:ENSGT00390000003682 IPI:IPI00562540
Ensembl:ENSRNOT00000017932 OMA:YPTEDAP Uniprot:F1LVJ5
Length = 291
Score = 358 (131.1 bits), Expect = 8.5e-33, P = 8.5e-33
Identities = 95/251 (37%), Positives = 128/251 (50%)
Query: 3 PKQGKPRVSRNPELIRGIGKFSRSKMYHKRGLWAIK--AKNGGVFPRHDXXXXXXXXXXX 60
PK+GKP SRNP L+RGIG++SRS MY ++ L+ K A V +
Sbjct: 45 PKKGKPHCSRNPVLVRGIGRYSRSAMYSRKALYKRKYSAAKTKVEKKKQKEKVLAVTKTV 104
Query: 61 XXX---------------FYPADDVKKPLVNKRK-P---KPTKLRASITPGTVLIILAGR 101
+YP D + L+++ K P +LR+SITPGTVLIIL GR
Sbjct: 105 GGDKKGGTWVVKLQKMPRYYPTTDAPRKLLSQGKTPFSQHVRRLRSSITPGTVLIILTGR 164
Query: 102 FKGKRVVFLKQLPSGLLLVSGPFKINGVPLRRVNQSYVIGTSTKVDISGVNVDKFDDKYF 161
+GKRVVFLKQL SGLLLV+GP +N VPL R +VI TSTKVDI V + K
Sbjct: 165 HRGKRVVFLKQLGSGLLLVTGPLALNRVPLHRTQLKFVIATSTKVDIGEVKIPKH----- 219
Query: 162 AKEVXXXXXXXXXXXXXXXXXXXXXXXXXXXDDQKSVDAPLIKAIEAVPDLKAYLGARFS 221
+ +QK+VD+ ++ I+A+P L+ YL ++FS
Sbjct: 220 LTDTTSRRSRGEESEIFDTEKKKYEITEQGKANQKAVDSQILSEIKAIPQLQDYLRSQFS 279
Query: 222 LRAGMKPHELV 232
L G P++LV
Sbjct: 280 LTKGTYPYKLV 290
>UNIPROTKB|F8W181 [details] [associations]
symbol:RPL6 "60S ribosomal protein L6" species:9606 "Homo
sapiens" [GO:0003735 "structural constituent of ribosome"
evidence=IEA] [GO:0006412 "translation" evidence=IEA] [GO:0005840
"ribosome" evidence=IEA] InterPro:IPR000915 Pfam:PF01159
PROSITE:PS01170 GO:GO:0006412 GO:GO:0005840 GO:GO:0003735
Gene3D:2.30.30.30 InterPro:IPR014722 PANTHER:PTHR10715
HGNC:HGNC:10362 ChiTaRS:RPL6 EMBL:AC004086 IPI:IPI01025005
ProteinModelPortal:F8W181 SMR:F8W181 Ensembl:ENST00000549923
ArrayExpress:F8W181 Bgee:F8W181 Uniprot:F8W181
Length = 226
Score = 351 (128.6 bits), Expect = 4.7e-32, P = 4.7e-32
Identities = 81/174 (46%), Positives = 106/174 (60%)
Query: 64 FYPADDVKKPLVNKRKPKP-----TKLRASITPGTVLIILAGRFKGKRVVFLKQLPSGLL 118
+YP +DV + L++ K KP KLRASITPGT+LIIL GR +GKRVVFLKQL SGLL
Sbjct: 55 YYPTEDVPRKLLSHGK-KPFSQHVRKLRASITPGTILIILTGRHRGKRVVFLKQLASGLL 113
Query: 119 LVSGPFKINGVPLRRVNQSYVIGTSTKVDISGVNVDK-FDDKYFAKEVXXXXXXXXXXXX 177
LV+GP +N VPLRR +Q +VI TSTK+DIS V + K D YF K+
Sbjct: 114 LVTGPLVLNRVPLRRTHQKFVIATSTKIDISNVKIPKHLTDAYFKKKKLRKPRHQEGEIF 173
Query: 178 XXXXXXXXXXXXXXXDDQKSVDAPLIKAIEAVPDLKAYLGARFSLRAGMKPHEL 231
D QK+VD+ ++ I+A+P L+ YL + F+L G+ PH+L
Sbjct: 174 DTEKEKYEITEQRKID-QKAVDSQILPKIKAIPQLQGYLRSVFALTNGIYPHKL 226
>DICTYBASE|DDB_G0292460 [details] [associations]
symbol:rpl6 "60S ribosomal protein L6" species:44689
"Dictyostelium discoideum" [GO:0006412 "translation" evidence=IEA]
[GO:0005840 "ribosome" evidence=IEA] [GO:0005622 "intracellular"
evidence=IEA] [GO:0003735 "structural constituent of ribosome"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0044351 "macropinocytosis" evidence=RCA] InterPro:IPR000915
Pfam:PF01159 PROSITE:PS01170 dictyBase:DDB_G0292460
GenomeReviews:CM000155_GR GO:GO:0006412 GO:GO:0005840 GO:GO:0003735
EMBL:AAFI02000190 Gene3D:2.30.30.30 InterPro:IPR014722
eggNOG:COG2163 KO:K02934 OMA:VSGPFKV PANTHER:PTHR10715
RefSeq:XP_629633.1 ProteinModelPortal:Q54D63 STRING:Q54D63
EnsemblProtists:DDB0231338 GeneID:8628697 KEGG:ddi:DDB_G0292460
ProtClustDB:CLSZ2437031 Uniprot:Q54D63
Length = 236
Score = 347 (127.2 bits), Expect = 1.3e-31, P = 1.3e-31
Identities = 78/169 (46%), Positives = 99/169 (58%)
Query: 66 PADDVKKPLVNKRKPKPTKLRASITPGTVLIILAGRFKGKRVVFLKQLPSGLLLVSGPFK 125
PA+ ++ K + K LR SITPGTVLIILAGRF GKRVV LKQL SGL+L++GPFK
Sbjct: 70 PAE-IRSTAAKKVQQK-VALRKSITPGTVLIILAGRFAGKRVVALKQLDSGLILITGPFK 127
Query: 126 INGVPLRRVNQSYVIGTSTKVDISGVNVDK-FDDKYFAKEVXXXXXXXXXXXXXXXXXXX 184
+NGVPLRR++Q YVI TSTK+D+S V V +D YFA E
Sbjct: 128 VNGVPLRRIDQRYVIATSTKIDVSSVKVAATINDAYFAAEKKSTTKSEGAFFSDEKKAEK 187
Query: 185 XXXXXXXXDDQKSVDAPLIKAIEAVPDLKAYLGARFSLRAGMKPHELVF 233
DQKSVD+ ++ ++ L YL +F L+ G PH+L F
Sbjct: 188 KKIADSRVADQKSVDSAILAVLKKEKFLTVYLKTKFYLKKGEFPHQLKF 236
>RGD|1590802 [details] [associations]
symbol:LOC367276 "similar to 60S ribosomal protein L6
(TAX-responsive enhancer element binding protein 107) (TAXREB107)"
species:10116 "Rattus norvegicus" [GO:0003735 "structural
constituent of ribosome" evidence=IEA] [GO:0005840 "ribosome"
evidence=IEA] [GO:0006412 "translation" evidence=IEA]
InterPro:IPR000915 InterPro:IPR005568 Pfam:PF01159 Pfam:PF03868
RGD:1590802 GO:GO:0006412 GO:GO:0005840 GO:GO:0003735
Gene3D:2.30.30.30 InterPro:IPR014722 PANTHER:PTHR10715
IPI:IPI00388628 Ensembl:ENSRNOT00000029667 Uniprot:F1LX93
Length = 260
Score = 228 (85.3 bits), Expect = 6.6e-28, Sum P(2) = 6.6e-28
Identities = 67/184 (36%), Positives = 92/184 (50%)
Query: 3 PKQGKPRVSRNPELIRGIGKFSRSKMYHKRGLWAIK---AKNGGVFPRHDXXXXXXXXXX 59
P++G P S NP L+RGIG +SRS Y ++ L+ +K AK+ R +
Sbjct: 32 PRKGSPICSPNPVLVRGIGGYSRSARYSRKALYKMKYSTAKSKAEKERKEKVLATVTTVG 91
Query: 60 XXXX-------------FYPADDVKKPLVNK-RKPKPT---KLRASITPGTVLIILAGRF 102
+YP DV + L++ +KP +LRAS TPG +
Sbjct: 92 GNKNGGTWVAKLRKMPWYYPTKDVLRELLSPGQKPLSQHVRRLRASATPG----LSRSSS 147
Query: 103 KGKRVVFLKQLPSGLLLVSGPFKINGVPLRRVNQSYVIGTSTKVDISGVNVDK-FDDKYF 161
G FLKQL S LLL +GP +NGVPL R +Q + I TSTKV IS V + K +D YF
Sbjct: 148 LGAHCFFLKQLDSSLLLETGPLALNGVPLLRTHQKFAITTSTKVVISNVKIPKHLNDAYF 207
Query: 162 AKEV 165
K++
Sbjct: 208 EKKL 211
Score = 99 (39.9 bits), Expect = 6.6e-28, Sum P(2) = 6.6e-28
Identities = 20/40 (50%), Positives = 28/40 (70%)
Query: 194 DQKSVDAPLIKAIEAVPDLKAYLGARFSLRAGMKPHELVF 233
DQK+ D+ + I+AVP L+ L ++FSL GM+PH LVF
Sbjct: 221 DQKTQDSQFLPKIKAVPQLQGDLPSQFSLANGMQPHRLVF 260
>FB|FBgn0039857 [details] [associations]
symbol:RpL6 "Ribosomal protein L6" species:7227 "Drosophila
melanogaster" [GO:0022625 "cytosolic large ribosomal subunit"
evidence=ISS] [GO:0006412 "translation" evidence=IEA] [GO:0003735
"structural constituent of ribosome" evidence=IDA] [GO:0005840
"ribosome" evidence=IDA] [GO:0005811 "lipid particle" evidence=IDA]
[GO:0007052 "mitotic spindle organization" evidence=IMP]
[GO:0000022 "mitotic spindle elongation" evidence=IMP] [GO:0051297
"centrosome organization" evidence=IMP] [GO:0051298 "centrosome
duplication" evidence=IMP] InterPro:IPR000915 InterPro:IPR005568
Pfam:PF01159 Pfam:PF03868 EMBL:AE014297 GO:GO:0051298 GO:GO:0005811
GO:GO:0006412 GO:GO:0005840 GO:GO:0003735 GO:GO:0000022
Gene3D:2.30.30.30 InterPro:IPR014722 KO:K02934 PANTHER:PTHR10715
OMA:KYELTEQ GeneTree:ENSGT00390000003682 CTD:6128 ChiTaRS:RPL6
UniGene:Dm.6176 GeneID:43723 KEGG:dme:Dmel_CG11522
FlyBase:FBgn0039857 GenomeRNAi:43723 NextBio:835438 EMBL:AY070994
RefSeq:NP_651876.1 SMR:Q9V9W3 STRING:Q9V9W3
EnsemblMetazoa:FBtr0085805 InParanoid:Q9V9W3 Uniprot:Q9V9W3
Length = 262
Score = 305 (112.4 bits), Expect = 3.5e-27, P = 3.5e-27
Identities = 88/249 (35%), Positives = 118/249 (47%)
Query: 4 KQGKPRVSRNPELIRGIGKFSRSKMYHKRGLWAIKAKNGGVFPRHDXXXXXXXXXXX--- 60
K+GK N L GI ++S+++MY +R L+ +K K V +
Sbjct: 15 KKGKKHPV-NSYLKGGILRYSKAQMYKRRALYRLKDKKSPVVEKAKVPIKKVKKIGGPKN 73
Query: 61 ---XXXFYPADDVKKPLVNKRKPKPTKL---------RASITPGTVLIILAGRFKGKRVV 108
F P K +P+K R ++TPGTVLI+LAGR +GKRVV
Sbjct: 74 GGERTVFLKKSKASYPTKTFVKKRPSKANFSEHKRNTRRNLTPGTVLILLAGRHQGKRVV 133
Query: 109 FLKQLPSGLLLVSGPFKINGVPLRRVNQSYVIGTSTKVDISGVNV-DKFDDKYFAKEVXX 167
LK L SGLLLV+GPF +N PLRRV+Q YVIGTS+KVD+ V + +D YF +
Sbjct: 134 LLKVLASGLLLVTGPFALNSCPLRRVSQRYVIGTSSKVDLGAFKVPEHLNDAYFRRLKAK 193
Query: 168 XXXXXXXXXXXXXXXXXXXXXXXXXDDQKSVDAPLIKAIEAVPDLK---AYLGARFSLRA 224
DQK VDA L+K I+A P+ K YL F+L +
Sbjct: 194 KDKKTGEADIFAAKKERFVPNEQRKKDQKEVDAALLKVIKAHPEGKFFAKYLQNMFALHS 253
Query: 225 GMKPHELVF 233
PH + F
Sbjct: 254 SQYPHRMRF 262
>UNIPROTKB|J9NU22 [details] [associations]
symbol:J9NU22 "60S ribosomal protein L6" species:9615
"Canis lupus familiaris" [GO:0005840 "ribosome" evidence=IEA]
[GO:0006412 "translation" evidence=IEA] [GO:0003735 "structural
constituent of ribosome" evidence=IEA] InterPro:IPR000915
InterPro:IPR005568 Pfam:PF01159 Pfam:PF03868 PROSITE:PS01170
GO:GO:0006412 GO:GO:0005840 GO:GO:0003735 Gene3D:2.30.30.30
InterPro:IPR014722 PANTHER:PTHR10715 GeneTree:ENSGT00390000003682
EMBL:AAEX03016718 Ensembl:ENSCAFT00000044534 Uniprot:J9NU22
Length = 264
Score = 303 (111.7 bits), Expect = 5.7e-27, P = 5.7e-27
Identities = 91/248 (36%), Positives = 119/248 (47%)
Query: 3 PKQGKPRVSRNPELIRGIGKFS----RSKMYHKRGLWAIKAKNGGVFPR-------HDXX 51
PK+GK S+NP L+RGIG++S R Y K K V
Sbjct: 21 PKKGKTHCSQNPVLVRGIGRYSWPCTRGSKYLAAKSRVEKEKKEKVLATVTKPVGLKKKK 80
Query: 52 XXXXXXXXXXXXFYPADDVKKPLVNKRKP---KPTKLRASI--TPGTVLIILAGRFKGKR 106
+YP +K L + + P KL+ASI TPGT+LIIL G +GKR
Sbjct: 81 KKRVVKLRKMPRYYPRKVTRKLLSHGKNPFSQHVRKLQASISITPGTILIILTGHHRGKR 140
Query: 107 VVFLKQLPSGLLLVSGPFKINGVPLRRVNQSYVIGTSTKVDISGVNVDK-FDDKYFAKEV 165
VFLKQ S LLLV+GP +N VPLRR +Q +VI TSTK+ IS V + K D YF K+
Sbjct: 141 EVFLKQRNSSLLLVTGPLALNRVPLRRTHQKFVIATSTKI-ISSVKIPKHLTDAYFKKKQ 199
Query: 166 XXXXXXXXXXXXXXXXXXXXXXXXXXXDDQKSVDAPLIKAIEAVPDLKAYLGARFSLRAG 225
DQK+VD+ ++ I+ VP L+ YL FS G
Sbjct: 200 LLKPRHQEGEIFDTKEKYKITEQHKV--DQKAVDSKILPKIKVVPQLQGYLRCVFSTN-G 256
Query: 226 MKPHELVF 233
+ PH+L+F
Sbjct: 257 VFPHKLMF 264
>UNIPROTKB|F1M4J7 [details] [associations]
symbol:F1M4J7 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0003735 "structural constituent of
ribosome" evidence=IEA] [GO:0005840 "ribosome" evidence=IEA]
[GO:0006412 "translation" evidence=IEA] InterPro:IPR000915
InterPro:IPR005568 Pfam:PF01159 Pfam:PF03868 GO:GO:0006412
GO:GO:0005840 GO:GO:0003735 Gene3D:2.30.30.30 InterPro:IPR014722
PANTHER:PTHR10715 IPI:IPI00949300 Ensembl:ENSRNOT00000065817
Uniprot:F1M4J7
Length = 202
Score = 200 (75.5 bits), Expect = 7.1e-25, Sum P(2) = 7.1e-25
Identities = 53/107 (49%), Positives = 70/107 (65%)
Query: 64 FYPADDVKKPLVNKRKPKP-----TKLRASITPGTVLIILAGRFKGKRVVFLKQLPSGLL 118
+YPA+DV + L++ K KP +LR+SITP T L+I +G G RVVFLKQL SGLL
Sbjct: 92 YYPAEDVHRKLLSHGK-KPFSQHVRRLRSSITPLTGLVIPSGT-TGARVVFLKQLGSGLL 149
Query: 119 LVSGPFKINGVPLRRVNQSYVIGTSTKVDISGVNVDKFDDKYFAKEV 165
V GP +N VPL R ++ +VI TS+KV IS V + K YF K++
Sbjct: 150 FV-GPLALNRVPLCRTHRKFVISTSSKV-ISEVKIPKHLTDYFKKKL 194
Score = 98 (39.6 bits), Expect = 7.1e-25, Sum P(2) = 7.1e-25
Identities = 17/35 (48%), Positives = 26/35 (74%)
Query: 4 KQGKPRVSRNPELIRGIGKFSRSKMYHKRGLWAIK 38
K+GKP S+NP +RG+G++SRS MY ++ L+ K
Sbjct: 15 KKGKPHCSQNPVPVRGVGRYSRSAMYSRKALYKRK 49
>UNIPROTKB|F1M2L7 [details] [associations]
symbol:F1M2L7 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0003735 "structural constituent of
ribosome" evidence=IEA] [GO:0005840 "ribosome" evidence=IEA]
[GO:0006412 "translation" evidence=IEA] InterPro:IPR000915
InterPro:IPR005568 Pfam:PF01159 Pfam:PF03868 GO:GO:0006412
GO:GO:0005840 GO:GO:0003735 Gene3D:2.30.30.30 InterPro:IPR014722
PANTHER:PTHR10715 GeneTree:ENSGT00390000003682 IPI:IPI00949670
Ensembl:ENSRNOT00000066666 Uniprot:F1M2L7
Length = 213
Score = 188 (71.2 bits), Expect = 1.3e-23, Sum P(2) = 1.3e-23
Identities = 50/97 (51%), Positives = 65/97 (67%)
Query: 64 FYPADDVKKPLVNKRKPKP-----TKLRASITPGTVLIILAGRFKGKRVVFLKQLPSGLL 118
+YPA+DV + L++ K KP +LR+SITP T L+I +G G RVVFLKQL SGLL
Sbjct: 115 YYPAEDVHRKLLSHGK-KPFSQHVRRLRSSITPLTGLVIPSGT-TGARVVFLKQLGSGLL 172
Query: 119 LVSGPFKINGVPLRRVNQSYVIGTSTKVDISGVNVDK 155
V GP +N VPL R ++ +VI TS+KV IS V + K
Sbjct: 173 FV-GPLALNRVPLCRTHRKFVISTSSKV-ISEVKIPK 207
Score = 98 (39.6 bits), Expect = 1.3e-23, Sum P(2) = 1.3e-23
Identities = 17/35 (48%), Positives = 26/35 (74%)
Query: 4 KQGKPRVSRNPELIRGIGKFSRSKMYHKRGLWAIK 38
K+GKP S+NP +RG+G++SRS MY ++ L+ K
Sbjct: 38 KKGKPHCSQNPVPVRGVGRYSRSAMYSRKALYKRK 72
>UNIPROTKB|J9P4W9 [details] [associations]
symbol:J9P4W9 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006412 "translation" evidence=IEA]
[GO:0005840 "ribosome" evidence=IEA] [GO:0003735 "structural
constituent of ribosome" evidence=IEA] InterPro:IPR000915
Pfam:PF01159 GO:GO:0006412 GO:GO:0005840 GO:GO:0003735
Gene3D:2.30.30.30 InterPro:IPR014722 PANTHER:PTHR10715
GeneTree:ENSGT00390000003682 EMBL:AAEX03017370
Ensembl:ENSCAFT00000023446 OMA:EIFHTEE Uniprot:J9P4W9
Length = 240
Score = 210 (79.0 bits), Expect = 7.6e-22, Sum P(2) = 7.6e-22
Identities = 50/105 (47%), Positives = 67/105 (63%)
Query: 65 YPADDVKKPLVNKRKPKPT----KLRASITPGTVLIILAGRFKGKRVVFLKQLPSGLLLV 120
+P++DV + L K + KLRAS+TPGT+LII G +GKRVVFLKQ +GLL V
Sbjct: 113 HPSEDVPQKLSRNGKTTISQYVRKLRASLTPGTILIIFTGDHRGKRVVFLKQGSNGLLPV 172
Query: 121 SGPFKINGVPLRRVNQSYVIGTSTKVDISGVNVDK-FDDKYFAKE 164
+ ++ VPL R +Q +VI TSTK+D+S V + K D Y KE
Sbjct: 173 TRALTLSQVPLHRTHQ-FVIATSTKIDVSSVKIPKHLTDAYSQKE 216
Score = 59 (25.8 bits), Expect = 7.6e-22, Sum P(2) = 7.6e-22
Identities = 11/32 (34%), Positives = 21/32 (65%)
Query: 3 PKQGKPRVSRNPELIRGIGKFSRSKMYHKRGL 34
P++GKP SR P + GIG +S+ ++ ++ +
Sbjct: 36 PRKGKPHCSR-PVPVGGIGSYSQLAVHSRKAI 66
>GENEDB_PFALCIPARUM|PF13_0213 [details] [associations]
symbol:PF13_0213 "60S ribosomal subunit protein
L6e, putative" species:5833 "Plasmodium falciparum" [GO:0022625
"cytosolic large ribosomal subunit" evidence=ISS]
InterPro:IPR000915 Pfam:PF01159 GO:GO:0006412 GO:GO:0003735
EMBL:AL844509 Gene3D:2.30.30.30 InterPro:IPR014722 GO:GO:0022625
InterPro:IPR005824 SMART:SM00739 HOGENOM:HOG000207317 KO:K02934
PANTHER:PTHR10715 ProtClustDB:CLSZ2437031 RefSeq:XP_001350109.1
ProteinModelPortal:Q8IDV1 IntAct:Q8IDV1 MINT:MINT-1560977
PRIDE:Q8IDV1 EnsemblProtists:PF13_0213:mRNA GeneID:814180
KEGG:pfa:PF13_0213 EuPathDB:PlasmoDB:PF3D7_1338200 OMA:FNFENIA
Uniprot:Q8IDV1
Length = 221
Score = 177 (67.4 bits), Expect = 2.0e-16, Sum P(2) = 2.0e-16
Identities = 41/97 (42%), Positives = 59/97 (60%)
Query: 71 KKPLVNKRKPKPTKLRASITPGTVLIILAGRFKGKRVVFLKQLPSGLLLVSGPFKINGVP 130
+K K+ KLR SI G V IIL G+ GKR + K L SGLL V GP++INGVP
Sbjct: 36 RKVASKKKYVVQRKLRKSIEVGKVAIILTGKHMGKRCIITKILNSGLLAVVGPYEINGVP 95
Query: 131 LRRVNQSYVIGTSTKVDISGVNVDKFDDKY--FAKEV 165
L+RV+ Y++ TST + + N+ K D + +A+++
Sbjct: 96 LKRVDSRYLVVTSTNI-FNFENIAKLKDDFLNYAQDI 131
Score = 40 (19.1 bits), Expect = 2.0e-16, Sum P(2) = 2.0e-16
Identities = 8/19 (42%), Positives = 13/19 (68%)
Query: 215 YLGARFSLRAGMKPHELVF 233
YL ++F+LR M H++ F
Sbjct: 203 YLKSKFTLRNDMVLHKMKF 221
>UNIPROTKB|Q8IDV1 [details] [associations]
symbol:PF13_0213 "60S ribosomal protein L6-2, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0022625 "cytosolic
large ribosomal subunit" evidence=ISS] InterPro:IPR000915
Pfam:PF01159 GO:GO:0006412 GO:GO:0003735 EMBL:AL844509
Gene3D:2.30.30.30 InterPro:IPR014722 GO:GO:0022625
InterPro:IPR005824 SMART:SM00739 HOGENOM:HOG000207317 KO:K02934
PANTHER:PTHR10715 ProtClustDB:CLSZ2437031 RefSeq:XP_001350109.1
ProteinModelPortal:Q8IDV1 IntAct:Q8IDV1 MINT:MINT-1560977
PRIDE:Q8IDV1 EnsemblProtists:PF13_0213:mRNA GeneID:814180
KEGG:pfa:PF13_0213 EuPathDB:PlasmoDB:PF3D7_1338200 OMA:FNFENIA
Uniprot:Q8IDV1
Length = 221
Score = 177 (67.4 bits), Expect = 2.0e-16, Sum P(2) = 2.0e-16
Identities = 41/97 (42%), Positives = 59/97 (60%)
Query: 71 KKPLVNKRKPKPTKLRASITPGTVLIILAGRFKGKRVVFLKQLPSGLLLVSGPFKINGVP 130
+K K+ KLR SI G V IIL G+ GKR + K L SGLL V GP++INGVP
Sbjct: 36 RKVASKKKYVVQRKLRKSIEVGKVAIILTGKHMGKRCIITKILNSGLLAVVGPYEINGVP 95
Query: 131 LRRVNQSYVIGTSTKVDISGVNVDKFDDKY--FAKEV 165
L+RV+ Y++ TST + + N+ K D + +A+++
Sbjct: 96 LKRVDSRYLVVTSTNI-FNFENIAKLKDDFLNYAQDI 131
Score = 40 (19.1 bits), Expect = 2.0e-16, Sum P(2) = 2.0e-16
Identities = 8/19 (42%), Positives = 13/19 (68%)
Query: 215 YLGARFSLRAGMKPHELVF 233
YL ++F+LR M H++ F
Sbjct: 203 YLKSKFTLRNDMVLHKMKF 221
>UNIPROTKB|F8VZ45 [details] [associations]
symbol:RPL6 "60S ribosomal protein L6" species:9606 "Homo
sapiens" [GO:0003735 "structural constituent of ribosome"
evidence=IEA] [GO:0005840 "ribosome" evidence=IEA] [GO:0006412
"translation" evidence=IEA] InterPro:IPR000915 InterPro:IPR005568
Pfam:PF03868 GO:GO:0006412 GO:GO:0005840 GO:GO:0003735
PANTHER:PTHR10715 HGNC:HGNC:10362 ChiTaRS:RPL6 EMBL:AC004086
IPI:IPI01021267 ProteinModelPortal:F8VZ45 SMR:F8VZ45
Ensembl:ENST00000549847 ArrayExpress:F8VZ45 Bgee:F8VZ45
Uniprot:F8VZ45
Length = 159
Score = 115 (45.5 bits), Expect = 4.8e-16, Sum P(2) = 4.8e-16
Identities = 20/36 (55%), Positives = 28/36 (77%)
Query: 3 PKQGKPRVSRNPELIRGIGKFSRSKMYHKRGLWAIK 38
PK+GKP SRNP L+RGIG++SRS MY ++ ++ K
Sbjct: 37 PKKGKPHCSRNPVLVRGIGRYSRSAMYSRKAMYKRK 72
Score = 108 (43.1 bits), Expect = 4.8e-16, Sum P(2) = 4.8e-16
Identities = 25/46 (54%), Positives = 32/46 (69%)
Query: 64 FYPADDVKKPLVNKRKPKP-----TKLRASITPGTVLIILAGRFKG 104
+YP +DV + L++ K KP KLRASITPGT+LIIL GR +G
Sbjct: 115 YYPTEDVPRKLLSHGK-KPFSQHVRKLRASITPGTILIILTGRHRG 159
>UNIPROTKB|F8VR69 [details] [associations]
symbol:RPL6 "60S ribosomal protein L6" species:9606 "Homo
sapiens" [GO:0003735 "structural constituent of ribosome"
evidence=IEA] [GO:0005840 "ribosome" evidence=IEA] [GO:0006412
"translation" evidence=IEA] InterPro:IPR000915 GO:GO:0006412
GO:GO:0005840 GO:GO:0003735 Gene3D:2.30.30.30 InterPro:IPR014722
PANTHER:PTHR10715 HGNC:HGNC:10362 ChiTaRS:RPL6 EMBL:AC004086
IPI:IPI01021128 ProteinModelPortal:F8VR69 SMR:F8VR69
Ensembl:ENST00000550238 ArrayExpress:F8VR69 Bgee:F8VR69
Uniprot:F8VR69
Length = 64
Score = 175 (66.7 bits), Expect = 2.1e-13, P = 2.1e-13
Identities = 40/62 (64%), Positives = 47/62 (75%)
Query: 64 FYPADDVKKPLVNKRKPKP-----TKLRASITPGTVLIILAGRFKGKRVVFLKQLPSGLL 118
+YP +DV + L++ K KP KLRASITPGT+LIIL GR +GKRVVFLKQL SGLL
Sbjct: 4 YYPTEDVPRKLLSHGK-KPFSQHVRKLRASITPGTILIILTGRHRGKRVVFLKQLASGLL 62
Query: 119 LV 120
LV
Sbjct: 63 LV 64
>UNIPROTKB|F8VRY1 [details] [associations]
symbol:RPL6 "60S ribosomal protein L6" species:9606 "Homo
sapiens" [GO:0003735 "structural constituent of ribosome"
evidence=IEA] [GO:0005840 "ribosome" evidence=IEA] [GO:0006412
"translation" evidence=IEA] InterPro:IPR000915 InterPro:IPR005568
Pfam:PF03868 GO:GO:0006412 GO:GO:0005840 GO:GO:0003735
PANTHER:PTHR10715 HGNC:HGNC:10362 ChiTaRS:RPL6 EMBL:AC004086
IPI:IPI01020969 ProteinModelPortal:F8VRY1 SMR:F8VRY1
Ensembl:ENST00000549006 ArrayExpress:F8VRY1 Bgee:F8VRY1
Uniprot:F8VRY1
Length = 72
Score = 115 (45.5 bits), Expect = 5.2e-07, P = 5.2e-07
Identities = 20/36 (55%), Positives = 28/36 (77%)
Query: 3 PKQGKPRVSRNPELIRGIGKFSRSKMYHKRGLWAIK 38
PK+GKP SRNP L+RGIG++SRS MY ++ ++ K
Sbjct: 37 PKKGKPHCSRNPVLVRGIGRYSRSAMYSRKAMYKRK 72
>UNIPROTKB|F8VWR1 [details] [associations]
symbol:RPL6 "60S ribosomal protein L6" species:9606 "Homo
sapiens" [GO:0003735 "structural constituent of ribosome"
evidence=IEA] [GO:0005840 "ribosome" evidence=IEA] [GO:0006412
"translation" evidence=IEA] InterPro:IPR000915 InterPro:IPR005568
Pfam:PF03868 GO:GO:0006412 GO:GO:0005840 GO:GO:0003735
PANTHER:PTHR10715 HGNC:HGNC:10362 ChiTaRS:RPL6 EMBL:AC004086
IPI:IPI01021434 Ensembl:ENST00000551291 Ensembl:ENST00000553213
Uniprot:F8VWR1
Length = 114
Score = 115 (45.5 bits), Expect = 5.2e-07, P = 5.2e-07
Identities = 20/36 (55%), Positives = 28/36 (77%)
Query: 3 PKQGKPRVSRNPELIRGIGKFSRSKMYHKRGLWAIK 38
PK+GKP SRNP L+RGIG++SRS MY ++ ++ K
Sbjct: 37 PKKGKPHCSRNPVLVRGIGRYSRSAMYSRKAMYKRK 72
>UNIPROTKB|F8VZA3 [details] [associations]
symbol:RPL6 "60S ribosomal protein L6" species:9606 "Homo
sapiens" [GO:0003735 "structural constituent of ribosome"
evidence=IEA] [GO:0005840 "ribosome" evidence=IEA] [GO:0006412
"translation" evidence=IEA] InterPro:IPR000915 InterPro:IPR005568
Pfam:PF03868 GO:GO:0006412 GO:GO:0005840 GO:GO:0003735
PANTHER:PTHR10715 HGNC:HGNC:10362 ChiTaRS:RPL6 EMBL:AC004086
IPI:IPI01021767 ProteinModelPortal:F8VZA3 PRIDE:F8VZA3
Ensembl:ENST00000548343 ArrayExpress:F8VZA3 Bgee:F8VZA3
Uniprot:F8VZA3
Length = 105
Score = 115 (45.5 bits), Expect = 5.2e-07, P = 5.2e-07
Identities = 20/36 (55%), Positives = 28/36 (77%)
Query: 3 PKQGKPRVSRNPELIRGIGKFSRSKMYHKRGLWAIK 38
PK+GKP SRNP L+RGIG++SRS MY ++ ++ K
Sbjct: 37 PKKGKPHCSRNPVLVRGIGRYSRSAMYSRKAMYKRK 72
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.321 0.140 0.411 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 233 192 0.00096 110 3 11 22 0.45 32
31 0.43 35
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 40
No. of states in DFA: 543 (58 KB)
Total size of DFA: 137 KB (2087 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 14.86u 0.09s 14.95t Elapsed: 00:00:02
Total cpu time: 14.87u 0.09s 14.96t Elapsed: 00:00:02
Start: Sat May 11 05:45:53 2013 End: Sat May 11 05:45:55 2013