BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 026785
(233 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P34091|RL6_MESCR 60S ribosomal protein L6 OS=Mesembryanthemum crystallinum GN=RPL6
PE=2 SV=1
Length = 234
Score = 376 bits (965), Expect = e-104, Method: Compositional matrix adjust.
Identities = 193/232 (83%), Positives = 210/232 (90%)
Query: 2 APKQGKPRVSRNPELIRGIGKFSRSKMYHKRGLWAIKAKNGGVFPRHDPKPKAAAPAEKP 61
A KQ KP VSRNPEL+RGIGK+SRSKMYHKRGLWAIKAKNGGVFP+H PK + EKP
Sbjct: 3 AAKQRKPHVSRNPELVRGIGKYSRSKMYHKRGLWAIKAKNGGVFPKHAPKSADSKAVEKP 62
Query: 62 PKFYPADDVKKPLVNKRKPKPTKLRASITPGTVLIILAGRFKGKRVVFLKQLPSGLLLVS 121
PKFYPADDVKKPL+NKRKPKPTKLRASITPGTVLIILAGRFKGKRVVFLKQL SGLLLV+
Sbjct: 63 PKFYPADDVKKPLINKRKPKPTKLRASITPGTVLIILAGRFKGKRVVFLKQLSSGLLLVT 122
Query: 122 GPFKINGVPLRRVNQSYVIGTSTKVDISGVNVDKFDDKYFAKEVERKKKKGENEFFESEK 181
GPFK+NGVPLRRVNQ+YVI TSTKVDISGVNV+KFDDKYF K+ E+K KKGE EFFE+EK
Sbjct: 123 GPFKVNGVPLRRVNQAYVIATSTKVDISGVNVEKFDDKYFGKKAEKKNKKGEGEFFEAEK 182
Query: 182 EEKKSLPQEKKDDQKSVDAPLIKAIEAVPDLKAYLGARFSLRAGMKPHELVF 233
+E LPQEKKDDQK+VD L+KAIE VP+LKAYLGARFSL+AGMKPHELVF
Sbjct: 183 KEVNVLPQEKKDDQKAVDVALLKAIEGVPELKAYLGARFSLKAGMKPHELVF 234
>sp|Q9C9C5|RL63_ARATH 60S ribosomal protein L6-3 OS=Arabidopsis thaliana GN=RPL6C PE=2
SV=1
Length = 233
Score = 354 bits (908), Expect = 3e-97, Method: Compositional matrix adjust.
Identities = 192/233 (82%), Positives = 209/233 (89%)
Query: 1 MAPKQGKPRVSRNPELIRGIGKFSRSKMYHKRGLWAIKAKNGGVFPRHDPKPKAAAPAEK 60
M KQ P+V+RNP+LIRG+GK+SRS+MYHKRGLWAIKAKNGGVFPRHD K K AP EK
Sbjct: 1 MPAKQRTPKVNRNPDLIRGVGKYSRSQMYHKRGLWAIKAKNGGVFPRHDAKSKVDAPVEK 60
Query: 61 PPKFYPADDVKKPLVNKRKPKPTKLRASITPGTVLIILAGRFKGKRVVFLKQLPSGLLLV 120
PPKFYPA+DVKKPL N+R KPTKLRASITPGTVLIILAGRFKGKRVVFLKQL SGLLLV
Sbjct: 61 PPKFYPAEDVKKPLPNRRTAKPTKLRASITPGTVLIILAGRFKGKRVVFLKQLASGLLLV 120
Query: 121 SGPFKINGVPLRRVNQSYVIGTSTKVDISGVNVDKFDDKYFAKEVERKKKKGENEFFESE 180
+GPFKINGVPLRRVNQ+YVIGTSTKVDISGV +DKFDDKYF K E+KKKK E EFFE+E
Sbjct: 121 TGPFKINGVPLRRVNQAYVIGTSTKVDISGVTLDKFDDKYFGKVAEKKKKKTEGEFFEAE 180
Query: 181 KEEKKSLPQEKKDDQKSVDAPLIKAIEAVPDLKAYLGARFSLRAGMKPHELVF 233
KEEKK +PQ KKDDQK+VDA LIKAIEAVP+LK YLGARFSL+ GMKPHELVF
Sbjct: 181 KEEKKEIPQVKKDDQKAVDAALIKAIEAVPELKTYLGARFSLKQGMKPHELVF 233
>sp|Q9C9C6|RL62_ARATH 60S ribosomal protein L6-2 OS=Arabidopsis thaliana GN=RPL6B PE=2
SV=1
Length = 233
Score = 349 bits (896), Expect = 9e-96, Method: Compositional matrix adjust.
Identities = 190/233 (81%), Positives = 207/233 (88%)
Query: 1 MAPKQGKPRVSRNPELIRGIGKFSRSKMYHKRGLWAIKAKNGGVFPRHDPKPKAAAPAEK 60
M KQ +V+RNP+LIRG+GK+SRS+MYHKRGLWAIKAKNGGVFPRHD K K AP EK
Sbjct: 1 MPAKQRTAKVNRNPDLIRGVGKYSRSQMYHKRGLWAIKAKNGGVFPRHDAKSKVDAPVEK 60
Query: 61 PPKFYPADDVKKPLVNKRKPKPTKLRASITPGTVLIILAGRFKGKRVVFLKQLPSGLLLV 120
PPKFYPA+DVKKPL N+R KP KLRASITPGTVLIILAGRFKGKRVVFLKQL SGLLLV
Sbjct: 61 PPKFYPAEDVKKPLPNRRTAKPAKLRASITPGTVLIILAGRFKGKRVVFLKQLASGLLLV 120
Query: 121 SGPFKINGVPLRRVNQSYVIGTSTKVDISGVNVDKFDDKYFAKEVERKKKKGENEFFESE 180
+GPFKINGVPLRRVNQ+YVIGTSTKVDISGV +DKFDDKYF K E+KKKK E EFFE+E
Sbjct: 121 TGPFKINGVPLRRVNQAYVIGTSTKVDISGVTLDKFDDKYFGKVAEKKKKKTEGEFFEAE 180
Query: 181 KEEKKSLPQEKKDDQKSVDAPLIKAIEAVPDLKAYLGARFSLRAGMKPHELVF 233
KEEKK +PQ KKDDQK+VDA LIKAIEAVP+LK YLGARFSL+ GMKPHELVF
Sbjct: 181 KEEKKEIPQGKKDDQKAVDAALIKAIEAVPELKTYLGARFSLKQGMKPHELVF 233
>sp|Q9FZ76|RL61_ARATH 60S ribosomal protein L6-1 OS=Arabidopsis thaliana GN=RPL6A PE=2
SV=1
Length = 233
Score = 341 bits (874), Expect = 3e-93, Method: Compositional matrix adjust.
Identities = 188/226 (83%), Positives = 209/226 (92%)
Query: 8 PRVSRNPELIRGIGKFSRSKMYHKRGLWAIKAKNGGVFPRHDPKPKAAAPAEKPPKFYPA 67
P+V+RNP+LIRG+GK+SRS+MYHKRGLWAIKAKNGGVFPRHD +PK AP EKP KFYPA
Sbjct: 8 PKVNRNPDLIRGVGKYSRSQMYHKRGLWAIKAKNGGVFPRHDAQPKVDAPVEKPAKFYPA 67
Query: 68 DDVKKPLVNKRKPKPTKLRASITPGTVLIILAGRFKGKRVVFLKQLPSGLLLVSGPFKIN 127
+DVKKPLVN+RKPKPTKL+ASITPGTVLIILAGRFKGKRVVFLKQL SGLLLV+GPFKIN
Sbjct: 68 EDVKKPLVNRRKPKPTKLKASITPGTVLIILAGRFKGKRVVFLKQLSSGLLLVTGPFKIN 127
Query: 128 GVPLRRVNQSYVIGTSTKVDISGVNVDKFDDKYFAKEVERKKKKGENEFFESEKEEKKSL 187
GVPLRRVNQ+YVIGTSTK+DISGVN +KFDDKYF K E+KKKK E EFFE+EKEEKK +
Sbjct: 128 GVPLRRVNQAYVIGTSTKIDISGVNTEKFDDKYFGKVAEKKKKKTEGEFFEAEKEEKKEI 187
Query: 188 PQEKKDDQKSVDAPLIKAIEAVPDLKAYLGARFSLRAGMKPHELVF 233
PQEKK+DQK+VDA LIK+IEAVP+LK YLGARFSL GMKPHELVF
Sbjct: 188 PQEKKEDQKTVDAALIKSIEAVPELKVYLGARFSLSQGMKPHELVF 233
>sp|Q2YGT9|RL6_PIG 60S ribosomal protein L6 OS=Sus scrofa GN=RPL6 PE=2 SV=3
Length = 284
Score = 204 bits (519), Expect = 4e-52, Method: Compositional matrix adjust.
Identities = 115/248 (46%), Positives = 157/248 (63%), Gaps = 23/248 (9%)
Query: 8 PRVSRNPELIRGIGKFSRSKMYHKRGLWAIKAKNGGVFPRHDPKPKAAAPAEKP------ 61
P SRNP L+RGIG++SRS MY ++ L+ K K + A KP
Sbjct: 38 PHCSRNPVLVRGIGRYSRSAMYSRKALYKRKYSAAKSKVEKKKKVRVLATVTKPVGGDKN 97
Query: 62 -----------PKFYPADDV-KKPLVNKRKP---KPTKLRASITPGTVLIILAGRFKGKR 106
P++YP +DV +K L + +KP KLRASITPGT+LIIL GR +GKR
Sbjct: 98 GGTRVVKLRKMPRYYPTEDVPRKLLSHGKKPFSKHVRKLRASITPGTILIILTGRHRGKR 157
Query: 107 VVFLKQLPSGLLLVSGPFKINGVPLRRVNQSYVIGTSTKVDISGVNV-DKFDDKYFAKEV 165
V+FLKQL SGLLLV+GP +N VPLRR +Q +VI TSTK+DISGV + + D YF K+
Sbjct: 158 VIFLKQLSSGLLLVTGPLSLNRVPLRRTHQKFVIATSTKIDISGVKIPEHLTDAYFKKKK 217
Query: 166 ERKKKKGENEFFESEKEEKKSLPQEKKDDQKSVDAPLIKAIEAVPDLKAYLGARFSLRAG 225
RK + E E F++EK EK + +++K DQK+VD+ +++ I+AVP L+ YL + F+L G
Sbjct: 218 LRKPRHQEGEIFDTEK-EKYEISEQRKVDQKAVDSQILRRIKAVPQLQGYLRSVFALTNG 276
Query: 226 MKPHELVF 233
+ PH+LVF
Sbjct: 277 IYPHKLVF 284
>sp|Q6QMZ4|RL6_CHILA 60S ribosomal protein L6 OS=Chinchilla lanigera GN=RPL6 PE=2 SV=3
Length = 288
Score = 203 bits (517), Expect = 8e-52, Method: Compositional matrix adjust.
Identities = 118/250 (47%), Positives = 157/250 (62%), Gaps = 23/250 (9%)
Query: 6 GKPRVSRNPELIRGIGKFSRSKMYHKRGLWAIKAKNGGVFPRHDPKPKAAAPAEKP---- 61
G+P SRNP L+RGIG++SRS MY ++ L+ K K K A KP
Sbjct: 40 GQPHCSRNPVLVRGIGRYSRSAMYSRKALYKRKYTAAKSKVEKKKKEKVLATVTKPVGGD 99
Query: 62 -------------PKFYPADDV-KKPLVNKRKP---KPTKLRASITPGTVLIILAGRFKG 104
P++YP +DV +K L + +KP KLRASITPGTVLIIL GR +G
Sbjct: 100 KNGGTRVVKLRKMPRYYPTEDVPRKLLSHGKKPFSQHVRKLRASITPGTVLIILTGRHRG 159
Query: 105 KRVVFLKQLPSGLLLVSGPFKINGVPLRRVNQSYVIGTSTKVDISGVNVDK-FDDKYFAK 163
KRVVFLKQL SGLLLV+GP +N VPLRR +Q +VI TSTK+DIS V + K D YF K
Sbjct: 160 KRVVFLKQLASGLLLVTGPLNLNRVPLRRTHQKFVIATSTKIDISNVKIPKHLTDAYFKK 219
Query: 164 EVERKKKKGENEFFESEKEEKKSLPQEKKDDQKSVDAPLIKAIEAVPDLKAYLGARFSLR 223
+ RK + E E F++EK E+ + +++K DQK+VD+ ++ I+AVP L+ YL + F+L
Sbjct: 220 KKLRKPRHQEGEIFDTEK-ERYQISEQRKVDQKAVDSQILPKIKAVPQLRGYLRSVFALT 278
Query: 224 AGMKPHELVF 233
G+ PH+LVF
Sbjct: 279 NGIYPHKLVF 288
>sp|Q58DQ3|RL6_BOVIN 60S ribosomal protein L6 OS=Bos taurus GN=RPL6 PE=2 SV=3
Length = 287
Score = 202 bits (514), Expect = 2e-51, Method: Compositional matrix adjust.
Identities = 114/248 (45%), Positives = 157/248 (63%), Gaps = 23/248 (9%)
Query: 8 PRVSRNPELIRGIGKFSRSKMYHKRGLWAIKAKNGGVFPRHDPKPKAAAPAEKP------ 61
P SRNP L+RGIG++SRS MY ++ L+ K K + A KP
Sbjct: 41 PHCSRNPVLVRGIGRYSRSAMYSRKALYKRKYSAAKSKVEKKKKVRVLATVTKPVGGDKN 100
Query: 62 -----------PKFYPADDV-KKPLVNKRKP---KPTKLRASITPGTVLIILAGRFKGKR 106
P++YP +DV +K L + +KP KLRASITPGT+LIIL GR +GKR
Sbjct: 101 GGTRVVKLRKMPRYYPTEDVPRKLLSHGKKPFSKHVRKLRASITPGTILIILTGRHRGKR 160
Query: 107 VVFLKQLPSGLLLVSGPFKINGVPLRRVNQSYVIGTSTKVDISGVNV-DKFDDKYFAKEV 165
VVFLKQL SGLLLV+GP +N VPLRR +Q +VI TSTK+DISGV + + D YF K+
Sbjct: 161 VVFLKQLGSGLLLVTGPLSLNRVPLRRTHQKFVIATSTKIDISGVKIPEHLTDTYFKKKK 220
Query: 166 ERKKKKGENEFFESEKEEKKSLPQEKKDDQKSVDAPLIKAIEAVPDLKAYLGARFSLRAG 225
RK + E E F++E+ EK + +++K DQK+VD+ +++ I+AVP L+ YL + F+L G
Sbjct: 221 LRKPRHQEGEIFDTER-EKYEITEQRKVDQKAVDSQILRRIKAVPQLQGYLRSVFALTNG 279
Query: 226 MKPHELVF 233
+ PH++VF
Sbjct: 280 IYPHKVVF 287
>sp|P21533|RL6_RAT 60S ribosomal protein L6 OS=Rattus norvegicus GN=Rpl6 PE=1 SV=5
Length = 298
Score = 199 bits (506), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 119/258 (46%), Positives = 156/258 (60%), Gaps = 42/258 (16%)
Query: 8 PRVSRNPELIRGIGKFSRSKMYHKRGLWAIKA---------------------------K 40
P SRNP L+RGIG++SRS MY ++ L+ K K
Sbjct: 51 PHCSRNPVLVRGIGRYSRSAMYSRKALYKRKYSAAKTKVEKKKKKEKVLATVTKTVGGDK 110
Query: 41 NGGVFPRHDPKPKAAAPAEKPPKFYPADDV-KKPLVNKRKP---KPTKLRASITPGTVLI 96
NGG K P++YP +DV +K L + +KP +LR+SITPGTVLI
Sbjct: 111 NGGT---------RVVKLRKMPRYYPTEDVPRKLLSHGKKPFSQHVRRLRSSITPGTVLI 161
Query: 97 ILAGRFKGKRVVFLKQLPSGLLLVSGPFKINGVPLRRVNQSYVIGTSTKVDISGVNVDK- 155
IL GR +GKRVVFLKQL SGLLLV+GP +N VPLRR +Q +VI TSTKVDIS V + K
Sbjct: 162 ILTGRHRGKRVVFLKQLGSGLLLVTGPLALNRVPLRRTHQKFVIATSTKVDISKVKIPKH 221
Query: 156 FDDKYFAKEVERKKKKGENEFFESEKEEKKSLPQEKKDDQKSVDAPLIKAIEAVPDLKAY 215
D YF K+ RK + E E F++EK EK + +++K DQK+VD+ ++ I+AVP L+ Y
Sbjct: 222 LTDAYFKKKPLRKPRHQEGEIFDTEK-EKYEITEQRKADQKAVDSQILPKIKAVPQLQGY 280
Query: 216 LGARFSLRAGMKPHELVF 233
L ++FSL GM PH+LVF
Sbjct: 281 LRSQFSLTNGMYPHKLVF 298
>sp|P47911|RL6_MOUSE 60S ribosomal protein L6 OS=Mus musculus GN=Rpl6 PE=1 SV=3
Length = 296
Score = 199 bits (505), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 119/256 (46%), Positives = 154/256 (60%), Gaps = 42/256 (16%)
Query: 10 VSRNPELIRGIGKFSRSKMYHKRGLWAIKA---------------------------KNG 42
SRNP L+RGIG++SRS MY ++ L+ K KNG
Sbjct: 51 CSRNPVLVRGIGRYSRSAMYSRKALYKRKYSAAKTKVEKKKKKEKVLATVTKTVGGDKNG 110
Query: 43 GVFPRHDPKPKAAAPAEKPPKFYPADDV-KKPLVNKRKP---KPTKLRASITPGTVLIIL 98
G K P++YP +DV +K L + +KP +LR+SITPGTVLIIL
Sbjct: 111 GT---------RVVKLRKMPRYYPTEDVPRKLLSHGKKPFSQHVRRLRSSITPGTVLIIL 161
Query: 99 AGRFKGKRVVFLKQLPSGLLLVSGPFKINGVPLRRVNQSYVIGTSTKVDISGVNVDK-FD 157
GR +GKRVVFLKQL SGLLLV+GP IN VPLRR +Q +VI TSTKVDIS V + K
Sbjct: 162 TGRHRGKRVVFLKQLDSGLLLVTGPLVINRVPLRRTHQKFVIATSTKVDISDVKIPKHLT 221
Query: 158 DKYFAKEVERKKKKGENEFFESEKEEKKSLPQEKKDDQKSVDAPLIKAIEAVPDLKAYLG 217
D YF K+ RK + E E F++EK EK + +++K DQK+VD ++ I+AVP L+ YL
Sbjct: 222 DAYFKKKQLRKPRHQEGEIFDTEK-EKYEITEQRKADQKAVDLQILPKIKAVPQLQGYLR 280
Query: 218 ARFSLRAGMKPHELVF 233
++FSL GM PH+LVF
Sbjct: 281 SQFSLTNGMYPHKLVF 296
>sp|Q02878|RL6_HUMAN 60S ribosomal protein L6 OS=Homo sapiens GN=RPL6 PE=1 SV=3
Length = 288
Score = 196 bits (497), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 114/246 (46%), Positives = 154/246 (62%), Gaps = 23/246 (9%)
Query: 10 VSRNPELIRGIGKFSRSKMYHKRGLWAIKAKNGGVFPRHDPKPKAAAPAEKP-------- 61
SRNP L+RGIG++SRS MY ++ ++ K K K A KP
Sbjct: 44 CSRNPVLVRGIGRYSRSAMYSRKAMYKRKYSAAKSKVEKKKKEKVLATVTKPVGGDKNGG 103
Query: 62 ---------PKFYPADDV-KKPLVNKRKP---KPTKLRASITPGTVLIILAGRFKGKRVV 108
P++YP +DV +K L + +KP KLRASITPGT+LIIL GR +GKRVV
Sbjct: 104 TRVVKLRKMPRYYPTEDVPRKLLSHGKKPFSQHVRKLRASITPGTILIILTGRHRGKRVV 163
Query: 109 FLKQLPSGLLLVSGPFKINGVPLRRVNQSYVIGTSTKVDISGVNVDK-FDDKYFAKEVER 167
FLKQL SGLLLV+GP +N VPLRR +Q +VI TSTK+DIS V + K D YF K+ R
Sbjct: 164 FLKQLASGLLLVTGPLVLNRVPLRRTHQKFVIATSTKIDISNVKIPKHLTDAYFKKKKLR 223
Query: 168 KKKKGENEFFESEKEEKKSLPQEKKDDQKSVDAPLIKAIEAVPDLKAYLGARFSLRAGMK 227
K + E E F++EK EK + +++K DQK+VD+ ++ I+A+P L+ YL + F+L G+
Sbjct: 224 KPRHQEGEIFDTEK-EKYEITEQRKIDQKAVDSQILPKIKAIPQLQGYLRSVFALTNGIY 282
Query: 228 PHELVF 233
PH+LVF
Sbjct: 283 PHKLVF 288
>sp|P0DJ56|RL6_TETTS 60S ribosomal protein L6 OS=Tetrahymena thermophila (strain SB210)
GN=RPL6 PE=1 SV=1
Length = 191
Score = 184 bits (466), Expect = 6e-46, Method: Compositional matrix adjust.
Identities = 93/178 (52%), Positives = 124/178 (69%), Gaps = 4/178 (2%)
Query: 60 KPPKFYPADDVKKPLVNK--RKPKPTKLRASITPGTVLIILAGRFKGKRVVFLKQLPSGL 117
K K+Y ADD P + +K TKLR I PGTVLI+LAGRF+GKRVVFLKQL SGL
Sbjct: 14 KISKWYKADDEATPFHRRQLKKATATKLRNDIAPGTVLILLAGRFRGKRVVFLKQLKSGL 73
Query: 118 LLVSGPFKINGVPLRRVNQSYVIGTSTKVDISGVNVDKFDDKYFAKEVERKKKKG--ENE 175
LLV+GP+K+NGVPL+RVNQ+Y + TSTKVD++GVN KF+D YF +E RK K + E
Sbjct: 74 LLVTGPYKVNGVPLKRVNQAYTLSTSTKVDLTGVNTAKFEDDYFGREKARKNHKNLFKAE 133
Query: 176 FFESEKEEKKSLPQEKKDDQKSVDAPLIKAIEAVPDLKAYLGARFSLRAGMKPHELVF 233
E +K+++ +K DQ++VD PL+ A++ V LK YL ++F+L +PHE+ F
Sbjct: 134 LTEEQKKKETERKNARKQDQQAVDTPLLAAVKKVEFLKNYLASKFTLNNNDRPHEMKF 191
>sp|Q02326|RL6A_YEAST 60S ribosomal protein L6-A OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=RPL6A PE=1 SV=2
Length = 176
Score = 178 bits (451), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 98/176 (55%), Positives = 124/176 (70%), Gaps = 2/176 (1%)
Query: 58 AEKPPKFYPADDVKKPLVNKRKPKPTKLRASITPGTVLIILAGRFKGKRVVFLKQLPSGL 117
A+K PK+YP++DV ++ +P KLRAS+ PGTVLI+LAGRF+GKRVV+LK L
Sbjct: 3 AQKAPKWYPSEDVAALKKTRKAARPQKLRASLVPGTVLILLAGRFRGKRVVYLKHLEDNT 62
Query: 118 LLVSGPFKINGVPLRRVNQSYVIGTSTKVDISGVNVDKFDDKYFAKEVERKKKKGENEFF 177
LL+SGPFK+NGVPLRRVN YVI TSTKV + GVNV+KF+ +YFAKE KK+K E F
Sbjct: 63 LLISGPFKVNGVPLRRVNARYVIATSTKVSVEGVNVEKFNVEYFAKEKLTKKEKKEANLF 122
Query: 178 ESEKEEKKSLPQEKKDDQKSVDAPLIKAIEAVPDLKAYLGARFSLRAGMKPHELVF 233
+++ K + E+ +DQK VD LI I+ P LK YL A FSL+ G KPH L F
Sbjct: 123 --PEQQNKEIKAERVEDQKVVDKALIAEIKKTPLLKQYLSASFSLKNGDKPHMLKF 176
>sp|P05739|RL6B_YEAST 60S ribosomal protein L6-B OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=RPL6B PE=1 SV=4
Length = 176
Score = 177 bits (450), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 97/176 (55%), Positives = 125/176 (71%), Gaps = 2/176 (1%)
Query: 58 AEKPPKFYPADDVKKPLVNKRKPKPTKLRASITPGTVLIILAGRFKGKRVVFLKQLPSGL 117
A++ PK+YP++DV P ++ +P KLRAS+ PGTVLI+LAGRF+GKRVV+LK L
Sbjct: 3 AQQAPKWYPSEDVAAPKKTRKAVRPQKLRASLVPGTVLILLAGRFRGKRVVYLKHLEDNT 62
Query: 118 LLVSGPFKINGVPLRRVNQSYVIGTSTKVDISGVNVDKFDDKYFAKEVERKKKKGENEFF 177
LLV+GPFK+NGVPLRRVN YVI TSTKV + GVNV+KF+ +YFAKE KK+K E F
Sbjct: 63 LLVTGPFKVNGVPLRRVNARYVIATSTKVSVEGVNVEKFNVEYFAKEKLTKKEKKEANLF 122
Query: 178 ESEKEEKKSLPQEKKDDQKSVDAPLIKAIEAVPDLKAYLGARFSLRAGMKPHELVF 233
+++ K + E+ +DQK VD L+ I+ P LK YL A FSL+ G KPH L F
Sbjct: 123 --PEQQTKEIKTERVEDQKVVDKALLAEIKKTPLLKQYLSASFSLKNGDKPHLLKF 176
>sp|P79071|RL6_SCHPO 60S ribosomal protein L6 OS=Schizosaccharomyces pombe (strain 972 /
ATCC 24843) GN=rpl6 PE=1 SV=2
Length = 195
Score = 169 bits (428), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 97/197 (49%), Positives = 130/197 (65%), Gaps = 12/197 (6%)
Query: 39 AKNGGVFPRHDPKPKAAAPA-EKPPKFYPADDVKKPLVNKRKPKPTKLRASITPGTVLII 97
AKNGG + PA E K+YPA P ++ +PTKLRAS+ PGTV I+
Sbjct: 9 AKNGG--------ERMVLPAGEAAAKYYPAYRENVPKKARKAVRPTKLRASLAPGTVCIL 60
Query: 98 LAGRFKGKRVVFLKQLPSGLLLVSGPFKINGVPLRRVNQSYVIGTST-KVDISGVNVDKF 156
LAGRF+GKRVV L QL L+V+GP+K+NGVP+RRVN YVI TS K+D+SGV+V+KF
Sbjct: 61 LAGRFRGKRVVVLSQL-EDTLVVTGPYKVNGVPIRRVNHRYVIATSAPKIDVSGVSVEKF 119
Query: 157 DDKYFAKEVERKKKKGENEFFESEKEEKKSLPQEKKDDQKSVDAPLIKAIEAVPDLKAYL 216
YFAK+ +R ++E F +E K +LP E+ DQK+VDA L+ AI+A+P++K YL
Sbjct: 120 TKAYFAKQ-KRSGPVKKDEAFFAENAPKNALPAERIADQKAVDAKLLPAIKAIPNMKEYL 178
Query: 217 GARFSLRAGMKPHELVF 233
A F+L G +PH + F
Sbjct: 179 AASFALSNGDRPHLMKF 195
>sp|P47991|RL6_CAEEL 60S ribosomal protein L6 OS=Caenorhabditis elegans GN=rpl-6 PE=1
SV=1
Length = 217
Score = 156 bits (395), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 101/245 (41%), Positives = 141/245 (57%), Gaps = 40/245 (16%)
Query: 1 MAPKQGKPRVSRNPELIRGIGKFSRSKMYHKRGLWAIKAKNGGVFPRHDPKPKAAAPAEK 60
M K+ P +SRN +L G+ +FS S++ K+G EK
Sbjct: 1 MVGKRNLPVISRNFDLSPGVLRFSASRLRLKKG-------------------------EK 35
Query: 61 PPKFYPADDVKKPLVNKR-------KPKPTKLRASITPGTVLIILAGRFKGKRVVFLKQL 113
PKF K P + + K LR ++TPGTVLI+LAGR KGKRVVFLKQL
Sbjct: 36 KPKFTKDTSAKLPKLQRNGTKFALGHSKTVTLRKTLTPGTVLIVLAGRHKGKRVVFLKQL 95
Query: 114 P-SGLLLVSGPFKINGVPLRRVNQSYVIGTSTKVDISGVNV-DKFDDKYFAKEVERKKKK 171
P SGLLLV+GP KING PLRR+ Q++VI TS KV++SGV + + +D+YF ++ +K
Sbjct: 96 PQSGLLLVTGPHKINGFPLRRIGQAFVIATSLKVNVSGVKIPEHINDEYFKRK-STAQKT 154
Query: 172 GENEFFESEKEEKKSLPQEKKDDQKSVDAPLIKAIEAVPDLK---AYLGARFSLRAGMKP 228
G+N F + E ++ +++K D K+VDAP++ AI+ P+ K YLG RFSL P
Sbjct: 155 GKNIFASGKTEY--TVSEQRKKDIKTVDAPILAAIKKHPEHKFLFGYLGTRFSLGKNQYP 212
Query: 229 HELVF 233
H++ F
Sbjct: 213 HKMQF 217
>sp|Q54D63|RL6_DICDI 60S ribosomal protein L6 OS=Dictyostelium discoideum GN=rpl6 PE=1
SV=1
Length = 236
Score = 147 bits (370), Expect = 8e-35, Method: Compositional matrix adjust.
Identities = 87/179 (48%), Positives = 115/179 (64%), Gaps = 4/179 (2%)
Query: 58 AEKPPKFYPADDVK-KPLVNKRKPKPTKLRASITPGTVLIILAGRFKGKRVVFLKQLPSG 116
A K KF P+ + + K+ + LR SITPGTVLIILAGRF GKRVV LKQL SG
Sbjct: 59 AAKASKFAPSIPAEIRSTAAKKVQQKVALRKSITPGTVLIILAGRFAGKRVVALKQLDSG 118
Query: 117 LLLVSGPFKINGVPLRRVNQSYVIGTSTKVDISGVNV-DKFDDKYFAKEVERKKKKGENE 175
L+L++GPFK+NGVPLRR++Q YVI TSTK+D+S V V +D YFA E ++ K E
Sbjct: 119 LILITGPFKVNGVPLRRIDQRYVIATSTKIDVSSVKVAATINDAYFAAE-KKSTTKSEGA 177
Query: 176 FFESEKEEKKSLPQEKK-DDQKSVDAPLIKAIEAVPDLKAYLGARFSLRAGMKPHELVF 233
FF EK+ +K + + DQKSVD+ ++ ++ L YL +F L+ G PH+L F
Sbjct: 178 FFSDEKKAEKKKIADSRVADQKSVDSAILAVLKKEKFLTVYLKTKFYLKKGEFPHQLKF 236
>sp|A8ABY5|RL14E_IGNH4 50S ribosomal protein L14e OS=Ignicoccus hospitalis (strain KIN4/I
/ DSM 18386 / JCM 14125) GN=rpl14e PE=3 SV=1
Length = 103
Score = 47.4 bits (111), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 32/93 (34%), Positives = 50/93 (53%), Gaps = 7/93 (7%)
Query: 88 SITPGTVLIILAGRFKGKRVVFLKQLPSGLLLVSGPFKINGVPLRRVNQSYVIGTSTKVD 147
+I G V +I+AGR GK+ V + + +LV+GP ++NGV RR+N ++ KV+
Sbjct: 3 AIEVGRVCVIIAGRRAGKKCVIVDLIDDKFVLVTGPKELNGVKRRRMNIKHLEPLDKKVE 62
Query: 148 ISGVNVDKFDDKYFAKEVERKKKKGENEFFESE 180
I DD AK +E ++ G EF + E
Sbjct: 63 IE----KGADD---AKVLEAIRQAGLEEFMKEE 88
>sp|Q4JAJ9|RL14E_SULAC 50S ribosomal protein L14e OS=Sulfolobus acidocaldarius (strain
ATCC 33909 / DSM 639 / JCM 8929 / NBRC 15157 / NCIMB
11770) GN=rpl14e PE=3 SV=1
Length = 96
Score = 43.9 bits (102), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 37/62 (59%)
Query: 88 SITPGTVLIILAGRFKGKRVVFLKQLPSGLLLVSGPFKINGVPLRRVNQSYVIGTSTKVD 147
+I G + + GR GK+ V + + S +LV+GP +INGV RRVN ++ T KV+
Sbjct: 3 AIEIGRICVKTRGREAGKKCVIVDIIDSNFVLVTGPKEINGVKRRRVNILHIEPTDKKVE 62
Query: 148 IS 149
I+
Sbjct: 63 IN 64
>sp|O15595|RL6_ENTHI 60S ribosomal protein L6 (Fragment) OS=Entamoeba histolytica
GN=RPL6 PE=3 SV=1
Length = 92
Score = 42.4 bits (98), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 36/65 (55%), Gaps = 14/65 (21%)
Query: 60 KPPKFYPADDV----KKPLVNKRKPKPT----------KLRASITPGTVLIILAGRFKGK 105
K P +YP DD+ KK L ++ K T KLR SI PG +LII+ G++ GK
Sbjct: 15 KVPAYYPTDDMIQEQKKKLRTRKGAKITALDKPGWNLEKLRKSIVPGAILIIVGGKYAGK 74
Query: 106 RVVFL 110
+VV L
Sbjct: 75 KVVSL 79
>sp|A4YCT0|RL14E_METS5 50S ribosomal protein L14e OS=Metallosphaera sedula (strain ATCC
51363 / DSM 5348) GN=rpl14e PE=3 SV=1
Length = 96
Score = 41.2 bits (95), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 36/62 (58%)
Query: 87 ASITPGTVLIILAGRFKGKRVVFLKQLPSGLLLVSGPFKINGVPLRRVNQSYVIGTSTKV 146
A I G + + L+GR G + V + + + +LV+GP I+GV RRVN S++ T V
Sbjct: 2 AIIEVGRICVKLSGREAGSKCVIVDIIDNNFVLVTGPKSISGVKRRRVNISHLEPTDKTV 61
Query: 147 DI 148
+I
Sbjct: 62 EI 63
>sp|Q980C1|RL14E_SULSO 50S ribosomal protein L14e OS=Sulfolobus solfataricus (strain ATCC
35092 / DSM 1617 / JCM 11322 / P2) GN=rpl14e PE=1 SV=1
Length = 96
Score = 40.4 bits (93), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 31/98 (31%), Positives = 47/98 (47%), Gaps = 10/98 (10%)
Query: 88 SITPGTVLIILAGRFKGKRVVFLKQLPSGLLLVSGPFKINGVPLRRVNQSYVIGTSTKVD 147
+I G + + + GR G + V + + +LV+GP I GV RRVN ++ T K+D
Sbjct: 3 AIEVGRICVKVKGREAGSKCVIVDIIDDNFVLVTGPKDITGVKRRRVNILHLEPTDKKID 62
Query: 148 ISGVNVDKFDDKYFAKEVERKKKKGENEFFESEKEEKK 185
I + A + E KKK E+ E KE+ K
Sbjct: 63 I----------QKGASDEEVKKKLEESNLTEYMKEKIK 90
>sp|Q975L7|RL14E_SULTO 50S ribosomal protein L14e OS=Sulfolobus tokodaii (strain DSM 16993
/ JCM 10545 / NBRC 100140 / 7) GN=rpl14e PE=3 SV=1
Length = 96
Score = 40.0 bits (92), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 34/62 (54%)
Query: 88 SITPGTVLIILAGRFKGKRVVFLKQLPSGLLLVSGPFKINGVPLRRVNQSYVIGTSTKVD 147
+I G + + GR GK+ V + + +LV+GP +N V RRVN ++ T K+D
Sbjct: 3 AIEIGRICVKTRGREAGKKCVIVDIIDENFVLVTGPKDVNKVKRRRVNILHLEPTDKKID 62
Query: 148 IS 149
I+
Sbjct: 63 IN 64
>sp|C3MXC5|RL14E_SULIM 50S ribosomal protein L14e OS=Sulfolobus islandicus (strain M.14.25
/ Kamchatka #1) GN=rpl14e PE=3 SV=1
Length = 96
Score = 40.0 bits (92), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 34/62 (54%)
Query: 88 SITPGTVLIILAGRFKGKRVVFLKQLPSGLLLVSGPFKINGVPLRRVNQSYVIGTSTKVD 147
+I G + + + GR G + V + + +LV+GP I+GV RRVN ++ T K+D
Sbjct: 3 AIEVGRICVKVKGREAGSKCVIVDIIDDNFVLVTGPKDISGVKRRRVNILHLEPTDKKID 62
Query: 148 IS 149
I
Sbjct: 63 IQ 64
>sp|C3N789|RL14E_SULIY 50S ribosomal protein L14e OS=Sulfolobus islandicus (strain
Y.G.57.14 / Yellowstone #1) GN=rpl14e PE=3 SV=1
Length = 96
Score = 39.7 bits (91), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 34/62 (54%)
Query: 88 SITPGTVLIILAGRFKGKRVVFLKQLPSGLLLVSGPFKINGVPLRRVNQSYVIGTSTKVD 147
+I G + + + GR G + V + + +LV+GP I+GV RRVN ++ T K+D
Sbjct: 3 AIEVGRICVKVKGREAGSKCVIVDIIDDNFVLVTGPKDISGVKRRRVNILHLEPTDKKID 62
Query: 148 IS 149
I
Sbjct: 63 IQ 64
>sp|C3NGE6|RL14E_SULIN 50S ribosomal protein L14e OS=Sulfolobus islandicus (strain
Y.N.15.51 / Yellowstone #2) GN=rpl14e PE=3 SV=1
Length = 96
Score = 39.7 bits (91), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 34/62 (54%)
Query: 88 SITPGTVLIILAGRFKGKRVVFLKQLPSGLLLVSGPFKINGVPLRRVNQSYVIGTSTKVD 147
+I G + + + GR G + V + + +LV+GP I+GV RRVN ++ T K+D
Sbjct: 3 AIEVGRICVKVKGREAGSKCVIVDIIDDNFVLVTGPKDISGVKRRRVNILHLEPTDKKID 62
Query: 148 IS 149
I
Sbjct: 63 IQ 64
>sp|C3MR21|RL14E_SULIL 50S ribosomal protein L14e OS=Sulfolobus islandicus (strain
L.S.2.15 / Lassen #1) GN=rpl14e PE=3 SV=1
Length = 96
Score = 39.7 bits (91), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 34/62 (54%)
Query: 88 SITPGTVLIILAGRFKGKRVVFLKQLPSGLLLVSGPFKINGVPLRRVNQSYVIGTSTKVD 147
+I G + + + GR G + V + + +LV+GP I+GV RRVN ++ T K+D
Sbjct: 3 AIEVGRICVKVKGREAGSKCVIVDIIDDNFVLVTGPKDISGVKRRRVNILHLEPTDKKID 62
Query: 148 IS 149
I
Sbjct: 63 IQ 64
>sp|C4KIE7|RL14E_SULIK 50S ribosomal protein L14e OS=Sulfolobus islandicus (strain M.16.4
/ Kamchatka #3) GN=rpl14e PE=3 SV=1
Length = 96
Score = 39.7 bits (91), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 34/62 (54%)
Query: 88 SITPGTVLIILAGRFKGKRVVFLKQLPSGLLLVSGPFKINGVPLRRVNQSYVIGTSTKVD 147
+I G + + + GR G + V + + +LV+GP I+GV RRVN ++ T K+D
Sbjct: 3 AIEVGRICVKVKGREAGSKCVIVDIIDDNFVLVTGPKDISGVKRRRVNILHLEPTDKKID 62
Query: 148 IS 149
I
Sbjct: 63 IQ 64
>sp|C3MZ69|RL14E_SULIA 50S ribosomal protein L14e OS=Sulfolobus islandicus (strain
M.16.27) GN=rpl14e PE=3 SV=1
Length = 96
Score = 39.7 bits (91), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 34/62 (54%)
Query: 88 SITPGTVLIILAGRFKGKRVVFLKQLPSGLLLVSGPFKINGVPLRRVNQSYVIGTSTKVD 147
+I G + + + GR G + V + + +LV+GP I+GV RRVN ++ T K+D
Sbjct: 3 AIEVGRICVKVKGREAGSKCVIVDIIDDNFVLVTGPKDISGVKRRRVNILHLEPTDKKID 62
Query: 148 IS 149
I
Sbjct: 63 IQ 64
>sp|Q8TX43|RL14E_METKA 50S ribosomal protein L14e OS=Methanopyrus kandleri (strain AV19 /
DSM 6324 / JCM 9639 / NBRC 100938) GN=rpl14e PE=3 SV=1
Length = 94
Score = 37.7 bits (86), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 32/63 (50%)
Query: 87 ASITPGTVLIILAGRFKGKRVVFLKQLPSGLLLVSGPFKINGVPLRRVNQSYVIGTSTKV 146
A I G + + AGR GK V + + ++++GP + GV RR N ++ T KV
Sbjct: 3 APIEVGRICVKTAGREAGKYCVVVDIVDENFVIITGPKDVTGVKRRRCNIKHLEPTPEKV 62
Query: 147 DIS 149
DI
Sbjct: 63 DID 65
>sp|A1RTL6|RL14E_PYRIL 50S ribosomal protein L14e OS=Pyrobaculum islandicum (strain DSM
4184 / JCM 9189) GN=rpl14e PE=3 SV=1
Length = 103
Score = 37.7 bits (86), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 19/60 (31%), Positives = 36/60 (60%)
Query: 89 ITPGTVLIILAGRFKGKRVVFLKQLPSGLLLVSGPFKINGVPLRRVNQSYVIGTSTKVDI 148
I G V++ + GR G++ V + + ++++GP ++ GV RRVN +++ T K+DI
Sbjct: 5 IDIGRVVVKVLGREAGRKAVVVDIVDENYVVITGPKQLTGVRRRRVNINHIEPTDKKIDI 64
>sp|Q8ZYB4|RL14E_PYRAE 50S ribosomal protein L14e OS=Pyrobaculum aerophilum (strain ATCC
51768 / IM2 / DSM 7523 / JCM 9630 / NBRC 100827)
GN=rpl14e PE=3 SV=1
Length = 103
Score = 37.7 bits (86), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 35/60 (58%)
Query: 89 ITPGTVLIILAGRFKGKRVVFLKQLPSGLLLVSGPFKINGVPLRRVNQSYVIGTSTKVDI 148
I G V++ + GR G++ V + + ++++GP I GV RRVN +++ T K+DI
Sbjct: 5 IDIGRVVVKVLGREAGRKAVVVDIVDENYVVITGPKPITGVKRRRVNINHIEPTDKKIDI 64
>sp|A4WH36|RL14E_PYRAR 50S ribosomal protein L14e OS=Pyrobaculum arsenaticum (strain DSM
13514 / JCM 11321) GN=rpl14e PE=3 SV=1
Length = 103
Score = 37.4 bits (85), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 20/60 (33%), Positives = 35/60 (58%)
Query: 89 ITPGTVLIILAGRFKGKRVVFLKQLPSGLLLVSGPFKINGVPLRRVNQSYVIGTSTKVDI 148
I G V++ + GR G++ V + + +L++GP + GV RRVN +++ T KV+I
Sbjct: 5 IDIGRVVVKVLGREAGRKAVVVDVVDENYVLITGPKTLTGVKRRRVNINHIEPTDKKVEI 64
>sp|A3DND4|RL14E_STAMF 50S ribosomal protein L14e OS=Staphylothermus marinus (strain ATCC
43588 / DSM 3639 / F1) GN=rpl14e PE=3 SV=1
Length = 96
Score = 36.2 bits (82), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 18/62 (29%), Positives = 33/62 (53%)
Query: 88 SITPGTVLIILAGRFKGKRVVFLKQLPSGLLLVSGPFKINGVPLRRVNQSYVIGTSTKVD 147
+I G + + +AGR G++ V + + +L++GP + GV RR N ++ +D
Sbjct: 3 AIEIGRICVKVAGREAGRKCVIVDIIDENFVLITGPKSLTGVKRRRANVKHIEPLDKVID 62
Query: 148 IS 149
IS
Sbjct: 63 IS 64
>sp|B1YA63|RL14E_PYRNV 50S ribosomal protein L14e OS=Pyrobaculum neutrophilum (strain DSM
2338 / JCM 9278 / V24Sta) GN=rpl14e PE=3 SV=1
Length = 103
Score = 36.2 bits (82), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 36/60 (60%)
Query: 89 ITPGTVLIILAGRFKGKRVVFLKQLPSGLLLVSGPFKINGVPLRRVNQSYVIGTSTKVDI 148
I G V++ + GR G++ V + + ++++GP ++ GV RRVN +++ T KV++
Sbjct: 5 IDVGRVVVKVLGREAGRKAVVVDIVDENYVVITGPKQLTGVRRRRVNVNHIEPTDKKVEV 64
>sp|Q9YDD7|RL14E_AERPE 50S ribosomal protein L14e OS=Aeropyrum pernix (strain ATCC 700893
/ DSM 11879 / JCM 9820 / NBRC 100138 / K1) GN=rpl14e
PE=3 SV=2
Length = 100
Score = 36.2 bits (82), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 31/61 (50%)
Query: 89 ITPGTVLIILAGRFKGKRVVFLKQLPSGLLLVSGPFKINGVPLRRVNQSYVIGTSTKVDI 148
+ G + + GR G++ V + + +LV+GP + GV RRVN ++ KVDI
Sbjct: 5 VEVGRICVKTRGREAGRKCVIVDIIDENFVLVTGPKSLTGVRRRRVNIDHIEILDKKVDI 64
Query: 149 S 149
Sbjct: 65 Q 65
>sp|A3MS76|RL14E_PYRCJ 50S ribosomal protein L14e OS=Pyrobaculum calidifontis (strain JCM
11548 / VA1) GN=rpl14e PE=3 SV=1
Length = 103
Score = 35.8 bits (81), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 36/60 (60%)
Query: 89 ITPGTVLIILAGRFKGKRVVFLKQLPSGLLLVSGPFKINGVPLRRVNQSYVIGTSTKVDI 148
I G V++ + GR G++ V + + ++++GP ++GV RRVN +++ T K++I
Sbjct: 5 IDVGRVVVKVLGREAGRKAVVVDIVDENYVVITGPKSLSGVRRRRVNINHIEPTDKKIEI 64
>sp|Q22306|YW12_CAEEL UPF0046 protein T07D4.2 OS=Caenorhabditis elegans GN=T07D4.2 PE=1
SV=3
Length = 396
Score = 34.3 bits (77), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 47/104 (45%), Gaps = 6/104 (5%)
Query: 74 LVNKRKPKPTK---LRASITPGTVLIILAGRFKGKRVVFLKQLPSGLLLVSGPFKINGVP 130
L KR KP + L + P V + G G++ K P +LLV+G F G+P
Sbjct: 112 LKEKRPVKPVRQMRLDTPVKPDHVRFVCIGCTHGEQFDISKLPPGDVLLVAGDFTSCGLP 171
Query: 131 LRRVNQSYVIG---TSTKVDISGVNVDKFDDKYFAKEVERKKKK 171
N + ++G S KV I G + FDD + + E + K+
Sbjct: 172 NEVHNFNKLLGKLKYSYKVVIGGNHECTFDDTFLKLKQESEPKE 215
>sp|B8D5U3|RL14E_DESK1 50S ribosomal protein L14e OS=Desulfurococcus kamchatkensis (strain
1221n / DSM 18924) GN=rpl14e PE=3 SV=1
Length = 96
Score = 33.9 bits (76), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 15/52 (28%), Positives = 29/52 (55%)
Query: 88 SITPGTVLIILAGRFKGKRVVFLKQLPSGLLLVSGPFKINGVPLRRVNQSYV 139
+I G + + AGR G++ + + + +LV+GP + GV R+VN ++
Sbjct: 3 AIEIGRICVKTAGREAGRKCIIVDIIDDNFVLVTGPKSLTGVKRRKVNIKHL 54
>sp|A2BME7|RL14E_HYPBU 50S ribosomal protein L14e OS=Hyperthermus butylicus (strain DSM
5456 / JCM 9403) GN=rpl14e PE=3 SV=1
Length = 98
Score = 33.5 bits (75), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 16/62 (25%), Positives = 34/62 (54%)
Query: 88 SITPGTVLIILAGRFKGKRVVFLKQLPSGLLLVSGPFKINGVPLRRVNQSYVIGTSTKVD 147
+I G + + GR G++ V ++ + +L++GP ++GV RR N +++ K++
Sbjct: 3 AIEVGRLCVKTRGREAGRKCVIVEIIDDNFVLITGPKDVSGVKRRRANINHIEVLPEKIN 62
Query: 148 IS 149
I
Sbjct: 63 IQ 64
>sp|Q8U2L5|RL14E_PYRFU 50S ribosomal protein L14e OS=Pyrococcus furiosus (strain ATCC
43587 / DSM 3638 / JCM 8422 / Vc1) GN=rpl14e PE=1 SV=1
Length = 83
Score = 32.3 bits (72), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 35/61 (57%), Gaps = 1/61 (1%)
Query: 88 SITPGTVLIILAGRFKGKRVVFLKQLPSGLLLVSGPFKINGVPLRRVNQSYVIGTSTKVD 147
+I G + +++AGR G++VV + + +LV+G +N V RR+N ++ K+D
Sbjct: 3 AIDVGRIAVVIAGRRAGQKVVVVDIIDKNFVLVTGA-GLNKVKRRRMNIKHIEPLPQKID 61
Query: 148 I 148
I
Sbjct: 62 I 62
>sp|Q9XSU7|RL27_CANFA 60S ribosomal protein L27 OS=Canis familiaris GN=RPL27 PE=2 SV=3
Length = 136
Score = 32.0 bits (71), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 32/126 (25%), Positives = 55/126 (43%), Gaps = 37/126 (29%)
Query: 89 ITPGTVLIILAGRFKGKRVVFLKQLPSGL-------LLVSG----PFKINGVP------- 130
+ PG V+++LAGR+ G++ V +K + G LV+G P K+
Sbjct: 5 MKPGKVVLVLAGRYSGRKAVIVKNIDDGTSDRPYSHALVAGIDRYPRKVTAAMGKKKIAK 64
Query: 131 -------LRRVNQSYVIGTSTKVDI----SGVNVDKFDDKYFAKEVER--------KKKK 171
++ N ++++ T VDI + VN D F D ++ R K K
Sbjct: 65 RSKIKSFVKVYNYNHLMPTRYSVDIPLDKTVVNKDVFRDPALKRKARREAKVKFEEKYKT 124
Query: 172 GENEFF 177
G+N++F
Sbjct: 125 GKNKWF 130
>sp|Q90YU1|RL27_ICTPU 60S ribosomal protein L27 OS=Ictalurus punctatus GN=rpl27 PE=2 SV=3
Length = 136
Score = 32.0 bits (71), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 32/126 (25%), Positives = 55/126 (43%), Gaps = 37/126 (29%)
Query: 89 ITPGTVLIILAGRFKGKRVVFLKQLPSGL-------LLVSG----PFKINGVP------- 130
+ PG V+++LAGR+ G++ V +K + G LVSG P K+
Sbjct: 5 MKPGKVVMVLAGRYAGRKAVIVKNIDDGTADRPYSHALVSGIDRYPRKVTATMGKKKVAK 64
Query: 131 -------LRRVNQSYVIGTSTKVDI----SGVNVDKFDDKYFAKEVER--------KKKK 171
++ N ++++ T VDI + VN D F D ++ R + K
Sbjct: 65 RSKIKAFVKVFNYNHLMPTRYSVDIPLDKTIVNKDVFRDPALKRKARREAKVKFEERYKT 124
Query: 172 GENEFF 177
G+N++F
Sbjct: 125 GKNKWF 130
>sp|P61354|RL27_RAT 60S ribosomal protein L27 OS=Rattus norvegicus GN=Rpl27 PE=2 SV=2
Length = 136
Score = 31.6 bits (70), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 20/28 (71%)
Query: 89 ITPGTVLIILAGRFKGKRVVFLKQLPSG 116
+ PG V+++LAGR+ G++ V +K + G
Sbjct: 5 MKPGKVVLVLAGRYSGRKAVIVKNIDDG 32
>sp|A1XQU5|RL27_PIG 60S ribosomal protein L27 OS=Sus scrofa GN=RPL27 PE=2 SV=1
Length = 136
Score = 31.6 bits (70), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 20/28 (71%)
Query: 89 ITPGTVLIILAGRFKGKRVVFLKQLPSG 116
+ PG V+++LAGR+ G++ V +K + G
Sbjct: 5 MKPGKVVLVLAGRYSGRKAVIVKNIDDG 32
>sp|P61358|RL27_MOUSE 60S ribosomal protein L27 OS=Mus musculus GN=Rpl27 PE=2 SV=2
Length = 136
Score = 31.6 bits (70), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 20/28 (71%)
Query: 89 ITPGTVLIILAGRFKGKRVVFLKQLPSG 116
+ PG V+++LAGR+ G++ V +K + G
Sbjct: 5 MKPGKVVLVLAGRYSGRKAVIVKNIDDG 32
>sp|Q4R8Z4|RL27_MACFA 60S ribosomal protein L27 OS=Macaca fascicularis GN=RPL27 PE=2 SV=1
Length = 136
Score = 31.6 bits (70), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 20/28 (71%)
Query: 89 ITPGTVLIILAGRFKGKRVVFLKQLPSG 116
+ PG V+++LAGR+ G++ V +K + G
Sbjct: 5 MKPGKVVLVLAGRYSGRKAVIVKNIDDG 32
>sp|P61353|RL27_HUMAN 60S ribosomal protein L27 OS=Homo sapiens GN=RPL27 PE=1 SV=2
Length = 136
Score = 31.6 bits (70), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 20/28 (71%)
Query: 89 ITPGTVLIILAGRFKGKRVVFLKQLPSG 116
+ PG V+++LAGR+ G++ V +K + G
Sbjct: 5 MKPGKVVLVLAGRYSGRKAVIVKNIDDG 32
>sp|P61355|RL27_CHICK 60S ribosomal protein L27 OS=Gallus gallus GN=RPL27 PE=2 SV=2
Length = 136
Score = 31.6 bits (70), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 20/28 (71%)
Query: 89 ITPGTVLIILAGRFKGKRVVFLKQLPSG 116
+ PG V+++LAGR+ G++ V +K + G
Sbjct: 5 MKPGKVVLVLAGRYSGRKAVIVKNIDDG 32
>sp|P61357|RL27_CERNI 60S ribosomal protein L27 OS=Cervus nippon GN=RPL27 PE=2 SV=2
Length = 136
Score = 31.6 bits (70), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 20/28 (71%)
Query: 89 ITPGTVLIILAGRFKGKRVVFLKQLPSG 116
+ PG V+++LAGR+ G++ V +K + G
Sbjct: 5 MKPGKVVLVLAGRYSGRKAVIVKNIDDG 32
>sp|P61356|RL27_BOVIN 60S ribosomal protein L27 OS=Bos taurus GN=RPL27 PE=2 SV=2
Length = 136
Score = 31.6 bits (70), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 11/28 (39%), Positives = 20/28 (71%)
Query: 89 ITPGTVLIILAGRFKGKRVVFLKQLPSG 116
+ PG V+++LAGR+ G++ V +K + G
Sbjct: 5 MKPGKVVLVLAGRYSGRKAVIVKNIDDG 32
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.316 0.136 0.393
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 95,192,292
Number of Sequences: 539616
Number of extensions: 4413181
Number of successful extensions: 25542
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 114
Number of HSP's successfully gapped in prelim test: 120
Number of HSP's that attempted gapping in prelim test: 24234
Number of HSP's gapped (non-prelim): 1185
length of query: 233
length of database: 191,569,459
effective HSP length: 114
effective length of query: 119
effective length of database: 130,053,235
effective search space: 15476334965
effective search space used: 15476334965
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 59 (27.3 bits)