Query 026785
Match_columns 233
No_of_seqs 169 out of 406
Neff 4.4
Searched_HMMs 29240
Date Mon Mar 25 22:07:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026785.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/026785hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3iz5_G 60S ribosomal protein L 100.0 5.2E-90 1.8E-94 602.3 -8.9 215 14-233 5-219 (219)
2 3izc_G 60S ribosomal protein R 100.0 4.6E-82 1.6E-86 537.2 2.5 176 56-233 1-176 (176)
3 4a18_E RPL6; ribosome, eukaryo 100.0 3.1E-74 1E-78 494.4 10.0 173 58-233 12-191 (191)
4 2joy_A 50S ribosomal protein L 99.8 2.7E-19 9.2E-24 138.7 6.5 73 88-164 3-75 (96)
5 4a18_N RPL27, ribosomal protei 99.4 1.5E-13 5.3E-18 113.7 5.1 74 88-163 4-104 (144)
6 3j21_5 50S ribosomal protein L 99.1 4.5E-11 1.5E-15 90.6 5.3 61 88-149 3-63 (83)
7 3izc_N 60S ribosomal protein R 98.9 8.4E-10 2.9E-14 90.8 5.9 62 86-149 12-73 (138)
8 3izc_a 60S ribosomal protein R 98.9 7.7E-12 2.6E-16 102.7 -7.9 62 88-149 4-90 (136)
9 3iz5_a 60S ribosomal protein L 98.8 5.3E-11 1.8E-15 97.7 -6.5 62 88-149 4-90 (136)
10 3iz5_N 60S ribosomal protein L 98.5 9.7E-08 3.3E-12 78.2 5.2 59 87-149 5-63 (134)
11 4a18_F RPL14; ribosome, eukary 98.2 1.7E-06 5.9E-11 70.2 5.3 58 88-149 6-64 (126)
12 2zjr_R 50S ribosomal protein L 95.2 0.016 5.4E-07 46.0 4.0 67 82-153 11-83 (115)
13 3r8s_U 50S ribosomal protein L 94.1 0.073 2.5E-06 41.4 5.1 63 88-153 3-71 (102)
14 2zkr_t 60S ribosomal protein L 93.9 0.042 1.4E-06 45.3 3.6 64 88-160 48-115 (145)
15 3j21_U 50S ribosomal protein L 93.5 0.058 2E-06 43.2 3.7 61 89-158 46-109 (121)
16 1vq8_T 50S ribosomal protein L 93.4 0.072 2.5E-06 42.6 4.1 56 89-153 43-99 (120)
17 3v2d_Y 50S ribosomal protein L 93.2 0.068 2.3E-06 42.1 3.6 63 88-153 6-74 (110)
18 3u5e_Y L33, YL33, 60S ribosoma 91.9 0.24 8.2E-06 40.0 5.4 62 89-159 50-114 (127)
19 2ftc_N Mitochondrial ribosomal 91.8 0.13 4.4E-06 39.5 3.5 58 92-153 1-64 (96)
20 4a17_S RPL26, 60S ribosomal pr 90.6 0.23 8E-06 40.5 4.1 61 89-158 49-112 (135)
21 3iz5_Y 60S ribosomal protein L 90.3 0.28 9.7E-06 40.7 4.4 66 82-158 44-112 (150)
22 3bbo_W Ribosomal protein L24; 87.0 0.083 2.8E-06 45.4 -1.0 63 88-153 68-136 (191)
23 2do3_A Transcription elongatio 81.4 2.4 8.1E-05 30.9 4.8 34 82-115 11-44 (69)
24 3ujm_A Rasputin; NTF2-like fol 53.1 8.1 0.00028 29.6 2.6 26 117-142 79-104 (120)
25 3q90_A RAS GTPase-activating p 50.8 6.6 0.00023 30.9 1.8 27 117-143 92-118 (140)
26 2rm4_A CG6311-PB, DM EDC3; enh 38.9 11 0.00036 29.4 1.2 47 99-153 23-69 (103)
27 3nv0_B NTF2-related export pro 38.2 20 0.00067 29.0 2.8 26 117-142 113-138 (154)
28 1zo2_A NTF2, nuclear transport 35.9 23 0.0008 27.3 2.8 26 118-143 87-112 (129)
29 1gy6_A Nuclear transport facto 34.1 26 0.00089 26.9 2.8 25 119-143 84-108 (127)
30 2qiy_A UBP3-associated protein 33.7 26 0.00088 27.8 2.8 27 117-143 105-131 (154)
31 1jkg_A P15; NTF2-like domain, 32.5 28 0.00097 27.1 2.8 24 119-142 94-117 (140)
32 1gy7_A Nuclear transport facto 28.9 36 0.0012 26.0 2.8 24 119-142 83-107 (125)
33 2e6z_A Transcription elongatio 27.1 37 0.0013 23.1 2.3 26 87-112 6-31 (59)
34 1dgw_Y Canavalin; duplicated s 24.8 55 0.0019 24.5 3.1 49 82-142 3-51 (93)
35 2ckk_A KIN17; beta barrel, rib 21.6 49 0.0017 26.0 2.3 23 91-113 73-95 (127)
36 1nz9_A Transcription antitermi 20.5 1.4E+02 0.0049 19.5 4.2 33 88-120 4-37 (58)
No 1
>3iz5_G 60S ribosomal protein L6 (L6E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_G
Probab=100.00 E-value=5.2e-90 Score=602.27 Aligned_cols=215 Identities=69% Similarity=1.090 Sum_probs=202.2
Q ss_pred cccccCccccchhhhhhccccceeeecCCCcCCCCCCCCcceeecCCCCCCCCCCCCCCccCCCCCCCccccccCcCCCc
Q 026785 14 PELIRGIGKFSRSKMYHKRGLWAIKAKNGGVFPRHDPKPKAAAPAEKPPKFYPADDVKKPLVNKRKPKPTKLRASITPGT 93 (233)
Q Consensus 14 ~~l~~Gi~r~S~s~~y~rk~~~~~k~k~gg~~~kng~~~~r~v~~~k~p~~Yptedv~~~~~~~k~~~~~klR~SitpGt 93 (233)
.+|++||+|||||+||+++|+|+.|.++||.+|+.. .....++|+||||||+|+++.+++++|+++||+||+|||
T Consensus 5 ~~l~~Gi~r~s~s~my~k~~~~~~k~k~gg~~~~~~-----k~~~~~~p~~YPtedv~~~~~~~k~~~~~klR~si~pGt 79 (219)
T 3iz5_G 5 SKMALGIKRASRSHTYHRRGLWAIKAKHGGALPKAE-----KPAAIAEPKFYPADDVKPRTVSTRKPHPTKLRSTITPGT 79 (219)
T ss_dssp HHHHTTTSHHHHHHHHHHHHHCSCTHHHHHHCCCCC-----CCCSSCCCCCCSSTTHHHHHHHHHTTHHHHHHHHCSCCS
T ss_pred hhhhcchhhhhHHHHHHHHHHHHHhcccCCcccccc-----ccccccccCcCCccccccccccccCcCcccccccccCCC
Confidence 389999999999999999999998888888876543 224557999999999999877677899999999999999
Q ss_pred EEEEecceecCceEEEeeecCCceEEEeccceecCcceeeeecceEEeeeeeeecCCcccCccChhhhhhhHhhhhcccc
Q 026785 94 VLIILAGRFKGKRVVFLKQLPSGLLLVSGPFKINGVPLRRVNQSYVIGTSTKVDISGVNVDKFDDKYFAKEVERKKKKGE 173 (233)
Q Consensus 94 vlIlL~G~~~GKRvVfLKqL~sglLLVTGP~~lNgvPlrRv~q~yVIaTstkvdis~vki~~l~D~YF~k~~~~k~k~~e 173 (233)
|||||+|+|+||||||||||+||||||||||.||||||||+||+|||||||+||||+|+|++|||+||++++.++++++|
T Consensus 80 VlIil~Gr~~GKrvVfLkqL~sgllLVtGP~~lNgVplrR~~qk~viaTstkIdIs~Vki~~l~D~YF~k~k~~k~k~~E 159 (219)
T 3iz5_G 80 VLILLAGRYMGKRVVFLKQLQSGLLLITGPFKINGVPIRRVNQAYVIATSTKVDISKVNVQKFDDKYFAREKKTRAKKTE 159 (219)
T ss_dssp CEECSSSSSSCCEECEEEESSSSSEEECCCCSSSCCCCEEESSSSCEECSCCCSCSSCCCSSCCCSSHHHHHHHHHHHHH
T ss_pred EEEEeccccCCcEEEEEEecCCCeEEEcCCccccCCccEEechhhEEecceEeecCccccccccHHHHhhhhhcccccch
Confidence 99999999999999999999999999999999999999999999999999999999999988999999999888899999
Q ss_pred cccccccchhcccCChhHHHhhhhccHHHHHHhhccchHHhhhcCcccccCCCCccccCC
Q 026785 174 NEFFESEKEEKKSLPQEKKDDQKSVDAPLIKAIEAVPDLKAYLGARFSLRAGMKPHELVF 233 (233)
Q Consensus 174 ~eiF~~~k~~k~~vseqrk~dQK~VD~~il~~Ikk~p~L~~YL~s~FsL~~g~~PH~l~F 233 (233)
+|||+++++|+|++||||++||++||+|||++|+++|+|++||+|+|+|+||||||+|+|
T Consensus 160 ~eiF~~~k~ek~~iseqrk~dQK~VD~~ll~~IKk~p~L~~YL~s~FsL~~g~~PH~l~F 219 (219)
T 3iz5_G 160 GELFESDKEATKNLPDFKKDDQKVIDAELIKAIDAVPDLKNYLGARFSLRDGDKPHEMTF 219 (219)
T ss_dssp HHHHHHHHHHCSCTHHHHHHHHHCSCCCSCCCCCCCCCTHHHHHHHHHHHHTTSSSSCCC
T ss_pred hhhhcccccccccCCHHHHHHHHHHHHHHHHHHhcCHHHHhhccceeECCCCCcCcccCC
Confidence 999998865899999999999999999999999999999999999999999999999999
No 2
>3izc_G 60S ribosomal protein RPL6 (L6E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_G 3o58_F 3o5h_F 3u5e_E 3u5i_E 4b6a_E
Probab=100.00 E-value=4.6e-82 Score=537.17 Aligned_cols=176 Identities=56% Similarity=0.903 Sum_probs=170.4
Q ss_pred eecCCCCCCCCCCCCCCccCCCCCCCccccccCcCCCcEEEEecceecCceEEEeeecCCceEEEeccceecCcceeeee
Q 026785 56 APAEKPPKFYPADDVKKPLVNKRKPKPTKLRASITPGTVLIILAGRFKGKRVVFLKQLPSGLLLVSGPFKINGVPLRRVN 135 (233)
Q Consensus 56 v~~~k~p~~Yptedv~~~~~~~k~~~~~klR~SitpGtvlIlL~G~~~GKRvVfLKqL~sglLLVTGP~~lNgvPlrRv~ 135 (233)
|+++|||+||||||+|+++.+++++|+++||+||+||||||+|+|+|+||||||||||+||||||||||.||||||||+|
T Consensus 1 ~~~~k~p~~YPtedv~~~~~~~k~~~~~klR~Si~pGtvlIil~Gr~~GkrvVfLKql~sglllVTGP~~lNgvplrR~~ 80 (176)
T 3izc_G 1 MSAQKAPKWYPSEDVAALKKTRKAARPQKLRASLVPGTVLILLAGRFRGKRVVYLKHLEDNTLLISGPFKVNGVPLRRVN 80 (176)
T ss_dssp CCSSCCCCCCCCCCCCCCCTTTSTTSSCSHHHHCCCCSCEECCSSSSSCCCBEEEEESSSSSEEEECCCSSSCCCCEEES
T ss_pred CCcccccCcCCccccccccccccccccccccccCCCCCEEEEeccccCCCEEEEEEecCCCeEEEecCceecCCcceeee
Confidence 46789999999999999988888999999999999999999999999999999999999999999999999999999999
Q ss_pred cceEEeeeeeeecCCcccCccChhhhhhhHhhhhcccccccccccchhcccCChhHHHhhhhccHHHHHHhhccchHHhh
Q 026785 136 QSYVIGTSTKVDISGVNVDKFDDKYFAKEVERKKKKGENEFFESEKEEKKSLPQEKKDDQKSVDAPLIKAIEAVPDLKAY 215 (233)
Q Consensus 136 q~yVIaTstkvdis~vki~~l~D~YF~k~~~~k~k~~e~eiF~~~k~~k~~vseqrk~dQK~VD~~il~~Ikk~p~L~~Y 215 (233)
|+|||||||+||||+|++++|||+||++++.++++++|+|||+++ |+|++||||++|||+||+|||++|+++|+|++|
T Consensus 81 q~~vIaTstkidis~vki~~l~D~YF~k~k~~k~k~~E~eiF~~~--ek~~vseqrk~dQK~VD~~ll~~Ikk~p~L~~Y 158 (176)
T 3izc_G 81 ARYVIATSTKVSVEGVNVEKFNVEYFAKEKLTKKEKKEANLFPEQ--QNKEIKAERVEDQKVVDKALIAEIKKTPLLKQY 158 (176)
T ss_dssp SSSCEECSCCCSSSSCCCSSCCCSSHHHHHHHHHHHHHHHHHHHH--HTTCSTTHHHHHHHCSCCTTCCCCCCCCCTHHH
T ss_pred cceEEeeeeeeecccccccccCHHHhhhhhccccccchhhhcccc--ccccCCHHHHHHHHHHHHHHHHHHhcCHHHHHh
Confidence 999999999999999999889999999988888999999999754 899999999999999999999999999999999
Q ss_pred hcCcccccCCCCccccCC
Q 026785 216 LGARFSLRAGMKPHELVF 233 (233)
Q Consensus 216 L~s~FsL~~g~~PH~l~F 233 (233)
|+|+|+|+||||||+|+|
T Consensus 159 L~s~FsL~~g~~PH~m~F 176 (176)
T 3izc_G 159 LSASFSLKNGDKPHMLKF 176 (176)
T ss_dssp HHHHHHHHHHCCCSCCCC
T ss_pred ccceeECCCCCccccccC
Confidence 999999999999999999
No 3
>4a18_E RPL6; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_E 4a1b_E 4a1d_E
Probab=100.00 E-value=3.1e-74 Score=494.38 Aligned_cols=173 Identities=53% Similarity=0.921 Sum_probs=163.1
Q ss_pred cCCCCCCCCCCCCCCccCCC--CCCCccccccCcCCCcEEEEecceecCceEEEeeecCCceEEEeccceecCcceeeee
Q 026785 58 AEKPPKFYPADDVKKPLVNK--RKPKPTKLRASITPGTVLIILAGRFKGKRVVFLKQLPSGLLLVSGPFKINGVPLRRVN 135 (233)
Q Consensus 58 ~~k~p~~Yptedv~~~~~~~--k~~~~~klR~SitpGtvlIlL~G~~~GKRvVfLKqL~sglLLVTGP~~lNgvPlrRv~ 135 (233)
.+|||+||||||+|+++.++ +++|+++||+||+||||||||+|||+||||||||||+|||||||||++||||||||+|
T Consensus 12 ~~k~p~~YPtedv~~~~~~~~~~~~~~~klr~si~pGtVlIiL~Gr~~GKrvV~LKql~sgllLVtGP~~vn~vplrrvn 91 (191)
T 4a18_E 12 VSKISKWYKADDEATPFHRRQLKKATATKLRNDIAPGTVLILLAGRFRGKRVVFLKQLKSGLLLVTGPYKVNGVPLKRVN 91 (191)
T ss_dssp TTSHHHHCCCCCSCCCCCCTTTTTCCCCCCCTTCCTTEEEEECSSTTTTBEEEEEEECTTSCEEEECCTTTSSCCSEEEC
T ss_pred cccccccCCcccccccccccccccccchhhhccccCCCEEEEeccccCCCEEEEEEecCCCeEEEecCccccCCceEEEe
Confidence 45999999999999997766 6899999999999999999999999999999999999999999999999999999999
Q ss_pred cceEEeeeeeeecCCcccCccChhhhhhhHhhhhccccccccccc---chhccc--CChhHHHhhhhccHHHHHHhhccc
Q 026785 136 QSYVIGTSTKVDISGVNVDKFDDKYFAKEVERKKKKGENEFFESE---KEEKKS--LPQEKKDDQKSVDAPLIKAIEAVP 210 (233)
Q Consensus 136 q~yVIaTstkvdis~vki~~l~D~YF~k~~~~k~k~~e~eiF~~~---k~~k~~--vseqrk~dQK~VD~~il~~Ikk~p 210 (233)
|+|||||||+||||||++++|||+||++++ ++++|+|||+++ ++++|+ +||||++||++||++||++|+++|
T Consensus 92 ~~~vi~TstkvDis~vki~~~~d~YF~k~k---~k~~e~eiF~~~~~~kek~~~~~iseqrk~dQK~VD~~ll~~IKk~p 168 (191)
T 4a18_E 92 QAYTLSTSTKVDLTGVNTAKFEDDYFGREK---ARKNHKNLFKAELTEEQKKKETERKNARKQDQQAVDTPLLAAVKKVE 168 (191)
T ss_dssp GGGEEEEEEECCCTTCCGGGCCGGGSCCCC---CCCCTTTTSCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTST
T ss_pred eeeEEeeeeEeecccccccccCHHHhcccc---cccchhhhhcccccchhhcccccccHHHHHHHHHHHHHHHHHHhcCH
Confidence 999999999999999999999999999764 378999999876 433255 999999999999999999999999
Q ss_pred hHHhhhcCcccccCCCCccccCC
Q 026785 211 DLKAYLGARFSLRAGMKPHELVF 233 (233)
Q Consensus 211 ~L~~YL~s~FsL~~g~~PH~l~F 233 (233)
+|++||+|+|+|+||||||+|+|
T Consensus 169 ~L~~YL~s~FsL~~g~~PH~m~F 191 (191)
T 4a18_E 169 FLKNYLASKFTLNNNDRPHEMKF 191 (191)
T ss_dssp THHHHHHSBCCCCTTCCTTTCCC
T ss_pred HHHhhccceeECCCCCcCccccC
Confidence 99999999999999999999999
No 4
>2joy_A 50S ribosomal protein L14E; protein solution structure, structural genomics, PSI-2, protein structure initiative; NMR {Sulfolobus solfataricus} SCOP: b.34.5.7 PDB: 2kds_A
Probab=99.77 E-value=2.7e-19 Score=138.71 Aligned_cols=73 Identities=32% Similarity=0.472 Sum_probs=68.0
Q ss_pred CcCCCcEEEEecceecCceEEEeeecCCceEEEeccceecCcceeeeecceEEeeeeeeecCCcccCccChhhhhhh
Q 026785 88 SITPGTVLIILAGRFKGKRVVFLKQLPSGLLLVSGPFKINGVPLRRVNQSYVIGTSTKVDISGVNVDKFDDKYFAKE 164 (233)
Q Consensus 88 SitpGtvlIlL~G~~~GKRvVfLKqL~sglLLVTGP~~lNgvPlrRv~q~yVIaTstkvdis~vki~~l~D~YF~k~ 164 (233)
+++||+|+|+++|||+||++|+|+++++|++||+||...|++|.+|+|++|+++|++++|+.. .++|+|+++.
T Consensus 3 ~v~~GrVv~~~~Gr~~Gk~~VIv~~iD~~~vLV~gp~~~~~~~rk~~n~khl~~T~~~vdi~~----~~~~~~vrka 75 (96)
T 2joy_A 3 AIEVGRICVKVKGREAGSKCVIVDIIDDNFVLVTGPKDITGVKRRRVNILHLEPTDKKIDIQK----GASDEEVKKK 75 (96)
T ss_dssp SSSTTEEEECSSSSTTCCEEEEEEECSSSCEEEECCTTTTCCCCEEESCSSCEEEEEECCCCS----SCCHHHHHHH
T ss_pred ccccCEEEEEeecCCCCCEEEEEEEeCCCEEEEECCcccCCcCCEEEchHHEEEeeEEEeCCC----CCChHHHHHH
Confidence 689999999999999999999999999999999999999999999999999999999999632 3799999864
No 5
>4a18_N RPL27, ribosomal protein L22; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_N 4a1b_N 4a1d_N
Probab=99.40 E-value=1.5e-13 Score=113.69 Aligned_cols=74 Identities=28% Similarity=0.435 Sum_probs=63.6
Q ss_pred CcCCCcEEEEecceecCceEEEeeecCC-------ceEEEec----cceecC-------cceee-------eecceEEee
Q 026785 88 SITPGTVLIILAGRFKGKRVVFLKQLPS-------GLLLVSG----PFKING-------VPLRR-------VNQSYVIGT 142 (233)
Q Consensus 88 SitpGtvlIlL~G~~~GKRvVfLKqL~s-------glLLVTG----P~~lNg-------vPlrR-------v~q~yVIaT 142 (233)
-++||+|+|+|+|+|+|++||+++++++ |.+||+| |.++++ ++..+ +|.+++++|
T Consensus 4 f~kpGrVvivl~Gr~aGkkaVIvk~iD~gt~d~~y~~aLVaGIdryP~kvt~~m~kkki~kRskiK~FvK~vN~~Hl~pT 83 (144)
T 4a18_N 4 FLKYGRVVILLQGRFAGKKAVIVKSSEDGTKDRKFGHVLVAGVERSPKKVTKRMGSKKIQKRTSVKPFIKYVNLNHIMPT 83 (144)
T ss_dssp CCCTTEEEEECSSTTTTCEEEEEEEESSCCSSCCSCEEEEEEEEECCCCCCSSCCHHHHHHTTCCEEEEEEEEGGGEEEE
T ss_pred cccCCeEEEEecCCcCCCEEEEEEecCCCccCCccceEEEEecccCCchhccccchheeccccccceeEEEEeeeeEEEe
Confidence 3789999999999999999999999999 7999999 999999 88888 999999999
Q ss_pred eeee--ecCCcccCccChhhhhh
Q 026785 143 STKV--DISGVNVDKFDDKYFAK 163 (233)
Q Consensus 143 stkv--dis~vki~~l~D~YF~k 163 (233)
++.| ||. ++ .-++.+-|+.
T Consensus 84 ry~v~~di~-lK-~~v~~d~~~~ 104 (144)
T 4a18_N 84 RYSVKELCD-FK-ELVKEDKIKN 104 (144)
T ss_dssp EEECSTTCC-HH-HHSCHHHHHT
T ss_pred eEEeeccCc-hh-hccCHHHhhh
Confidence 9999 874 22 1256555543
No 6
>3j21_5 50S ribosomal protein L14E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=99.13 E-value=4.5e-11 Score=90.56 Aligned_cols=61 Identities=31% Similarity=0.548 Sum_probs=57.6
Q ss_pred CcCCCcEEEEecceecCceEEEeeecCCceEEEeccceecCcceeeeecceEEeeeeeeecC
Q 026785 88 SITPGTVLIILAGRFKGKRVVFLKQLPSGLLLVSGPFKINGVPLRRVNQSYVIGTSTKVDIS 149 (233)
Q Consensus 88 SitpGtvlIlL~G~~~GKRvVfLKqL~sglLLVTGP~~lNgvPlrRv~q~yVIaTstkvdis 149 (233)
.+.+|.|+++++|+++|+.+|+++.++++.+||+|| .++|||.++.|.+++..|+.+|+++
T Consensus 3 ~~~~Grvv~~~~Gr~~Gk~~vIv~iiD~~~vlV~g~-~~~~v~rk~kn~khl~lt~~~i~~~ 63 (83)
T 3j21_5 3 AIDVGRIAVVIAGRRAGQKVVVVDIIDKNFVLVTGA-GLNKVKRRRMNIKHIEPLPQKIDIP 63 (83)
T ss_dssp CCCTTEEEECSSSSSSCCCEEEEEECSSSCEEEECC-TTTTCCCEEESCSSCEEEEEECCCC
T ss_pred ccccCEEEEEeecCCCCCEEEEEEEcCCCEEEEECC-ccCccCCeEechHHEEEeeEEEECC
Confidence 478999999999999999999999999999999999 6799999999999999999998764
No 7
>3izc_N 60S ribosomal protein RPL14 (L14E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_N 3o58_N 3o5h_N 3u5e_M 3u5i_M 4b6a_M
Probab=98.94 E-value=8.4e-10 Score=90.83 Aligned_cols=62 Identities=24% Similarity=0.404 Sum_probs=58.2
Q ss_pred ccCcCCCcEEEEecceecCceEEEeeecCCceEEEeccceecCcceeeeecceEEeeeeeeecC
Q 026785 86 RASITPGTVLIILAGRFKGKRVVFLKQLPSGLLLVSGPFKINGVPLRRVNQSYVIGTSTKVDIS 149 (233)
Q Consensus 86 R~SitpGtvlIlL~G~~~GKRvVfLKqL~sglLLVTGP~~lNgvPlrRv~q~yVIaTstkvdis 149 (233)
..-+.||.|+++++|+++|+.+|+++.++++.+||.|| .+|||.+++|-+++..|+..|||+
T Consensus 12 ~rfve~GrVV~i~~Gr~aGk~avIV~iiD~~rVLVDGp--~~gV~R~~~n~khL~lT~~~v~i~ 73 (138)
T 3izc_N 12 WRLVEVGRVVLIKKGQSAGKLAAIVEIIDQKKVLIDGP--KAGVPRQAINLGQVVLTPLTFALP 73 (138)
T ss_dssp CCCSSTTEEEECCSCSSSCCEEEEEEECSSSEEEEECS--SSSCCCEEEECSSSEEEEEECCCC
T ss_pred hhhcccCeEEEEeeCCCCCCEEEEEEEecCCEEEEEcC--CCCcccceechhHeEEecEEEEcc
Confidence 34578999999999999999999999999999999999 589999999999999999999885
No 8
>3izc_a 60S ribosomal protein RPL27 (L27E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins; NMR {Saccharomyces cerevisiae} PDB: 3izs_a 3u5e_Z 3u5i_Z 4b6a_Z
Probab=98.89 E-value=7.7e-12 Score=102.67 Aligned_cols=62 Identities=29% Similarity=0.572 Sum_probs=52.5
Q ss_pred CcCCCcEEEEecceecCceEEEeeecCCc-------eEEEec----cceecC-------cceeee-------ecceEEee
Q 026785 88 SITPGTVLIILAGRFKGKRVVFLKQLPSG-------LLLVSG----PFKING-------VPLRRV-------NQSYVIGT 142 (233)
Q Consensus 88 SitpGtvlIlL~G~~~GKRvVfLKqL~sg-------lLLVTG----P~~lNg-------vPlrRv-------~q~yVIaT 142 (233)
-++||+|+|+|+|||+|++||+||++++| ..||+| |.++.+ .--.++ |-+++++|
T Consensus 4 f~kpGkVvivl~GryaGkKaVivk~~d~gt~d~py~halVaGIdryP~kvt~~Mgkkki~KrskiK~FvKv~NynHlmPT 83 (136)
T 3izc_a 4 FLKAGKVAVVVRGRYAGKKVVIVKPHDEGSKSHPFGHALVAGIERYPLKVTKKHGAKKVAKRTKIKPFIKVVNYNHLLPT 83 (136)
T ss_dssp -CCCCCCCBCCCSSSSCCBCBCCCCSSSCSCCSSSCCSCCBCCSSSSCCCCCCSSSCCCCCCTTHHHHHHHHHHHHHHHH
T ss_pred cccCCEEEEEeccccCCcEEEEEEecCCCCCCCccceEEEEecccCChhhhhccCHHHHHhhhhceeeeEEEeccceeee
Confidence 37899999999999999999999999998 899999 665554 222444 89999999
Q ss_pred eeeeecC
Q 026785 143 STKVDIS 149 (233)
Q Consensus 143 stkvdis 149 (233)
...|||.
T Consensus 84 Ry~vdi~ 90 (136)
T 3izc_a 84 RYTLDVE 90 (136)
T ss_dssp HHHHHHH
T ss_pred eeeEccc
Confidence 9999985
No 9
>3iz5_a 60S ribosomal protein L27 (L27E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_a
Probab=98.78 E-value=5.3e-11 Score=97.72 Aligned_cols=62 Identities=32% Similarity=0.593 Sum_probs=52.7
Q ss_pred CcCCCcEEEEecceecCceEEEeeecCCc-------eEEEec----cceecC-------cceeee-------ecceEEee
Q 026785 88 SITPGTVLIILAGRFKGKRVVFLKQLPSG-------LLLVSG----PFKING-------VPLRRV-------NQSYVIGT 142 (233)
Q Consensus 88 SitpGtvlIlL~G~~~GKRvVfLKqL~sg-------lLLVTG----P~~lNg-------vPlrRv-------~q~yVIaT 142 (233)
-++||+|+|+|+|||+|++||+||++++| .+||+| |.++.+ .--.++ |-+++++|
T Consensus 4 ~~kpGkVvivl~GryaGkKaVivk~~d~gt~drpy~halVaGIdryP~kvt~~M~kkki~KrskiK~FvKv~NynHlmPT 83 (136)
T 3iz5_a 4 FLKPGKAVILLQGRFAGRKAVIVRVFEEGTRDRPYGHCLVAGLAKYPKKVIRKDSAKKTAKKSRVKCFLKLVNFTHLMPT 83 (136)
T ss_dssp SCCCCCSCCCCCSSSSCCCCBCSCCSSSSSCSCSSCCSCCBCCSTTTTCCCCCCSSSCCCCCHHHHHHHHHHHHHHHHHH
T ss_pred cccCCEEEEEeccccCCcEEEEEEecCCCCCCCccceEEEEeeccCChhhccCCCHHHhhhhhhceeeeEEEeecceecc
Confidence 47899999999999999999999999998 999999 666555 222444 89999999
Q ss_pred eeeeecC
Q 026785 143 STKVDIS 149 (233)
Q Consensus 143 stkvdis 149 (233)
...+||.
T Consensus 84 RY~vdi~ 90 (136)
T 3iz5_a 84 RYTLDVD 90 (136)
T ss_dssp HHHHHHH
T ss_pred ceEeecc
Confidence 9999884
No 10
>3iz5_N 60S ribosomal protein L14 (L14E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_N
Probab=98.50 E-value=9.7e-08 Score=78.21 Aligned_cols=59 Identities=24% Similarity=0.268 Sum_probs=55.5
Q ss_pred cCcCCCcEEEEecceecCceEEEeeecCCceEEEeccceecCcceeeeecceEEeeeeeeecC
Q 026785 87 ASITPGTVLIILAGRFKGKRVVFLKQLPSGLLLVSGPFKINGVPLRRVNQSYVIGTSTKVDIS 149 (233)
Q Consensus 87 ~SitpGtvlIlL~G~~~GKRvVfLKqL~sglLLVTGP~~lNgvPlrRv~q~yVIaTstkvdis 149 (233)
.=+.||.|++++.|+++|+.+|+++.+|++.+||.||. ||.+.+|-+++..|...|||.
T Consensus 5 rfvevGRVV~i~~Gr~aGk~avIV~iiD~~rvLVdG~~----v~Rk~~n~khL~lT~~~v~i~ 63 (134)
T 3iz5_N 5 RFVEIGRVALVNYGKDYGRLVVIVDVVDQNRALVDAPD----MVRCQINFKRLSLTDIKIDIK 63 (134)
T ss_dssp CSCCSSEEEECSCCSSSCCEEEEEEECSSSEEEEEETT----EEEEEEECTTSEEEEEECCCC
T ss_pred cccccCeEEEEeeCCCCCCEEEEEEEcCCCeEEEeCCC----ccceeechhHeEEeCEEEecc
Confidence 34789999999999999999999999999999999997 899999999999999999875
No 11
>4a18_F RPL14; ribosome, eukaryotic initiation factor 6, EIF6, transla large ribosomal subunit, rRNA; 3.52A {Tetrahymena thermophila} PDB: 4a19_F 4a1b_F 4a1d_F 4adx_7
Probab=98.18 E-value=1.7e-06 Score=70.19 Aligned_cols=58 Identities=22% Similarity=0.284 Sum_probs=54.3
Q ss_pred CcCCCcEEEEecceecCceEEEeeecCCceEEEeccceecCcceeeeecceEEeeeeeee-cC
Q 026785 88 SITPGTVLIILAGRFKGKRVVFLKQLPSGLLLVSGPFKINGVPLRRVNQSYVIGTSTKVD-IS 149 (233)
Q Consensus 88 SitpGtvlIlL~G~~~GKRvVfLKqL~sglLLVTGP~~lNgvPlrRv~q~yVIaTstkvd-is 149 (233)
=+.+|.|++++.|+++||-||++..+|.+.+||.||- ||.+.+|-+++..|.-+|| |.
T Consensus 6 fvevGRVv~i~~G~~aGklavIVdIID~nrvLVdGp~----V~Rq~~n~k~l~LT~~~v~~i~ 64 (126)
T 4a18_F 6 FVQVGRVVYINYGADKGKLAVIVNIINQNRILIDGEH----IVRQVIPIRRVHLTKFQIDNVE 64 (126)
T ss_dssp EEETTEEEEECSSTTTTEEEEEEEEETTTEEEEEETT----EEEEEEEGGGEEEEEEECTTCC
T ss_pred ceecceEEEEccCCccCCEEEEEEEecCCeEEEeCCC----cccceeeccceEEcceeccccC
Confidence 4679999999999999999999999999999999996 9999999999999999887 63
No 12
>2zjr_R 50S ribosomal protein L24; ribosome, large ribosomal subunit, ribonucleoprotein, RNA-binding, rRNA-binding, tRNA-binding, methylation; 2.91A {Deinococcus radiodurans} SCOP: b.34.5.1 PDB: 1nwx_S* 1nwy_S* 1sm1_S* 1xbp_S* 2d3o_S 2zjp_R* 2zjq_R 1nkw_S 3cf5_R* 3dll_R* 3pio_R* 3pip_R* 1pnu_S 1pny_S 1vor_V 1vou_V 1vow_V 1voy_V 1vp0_V
Probab=95.21 E-value=0.016 Score=45.99 Aligned_cols=67 Identities=25% Similarity=0.327 Sum_probs=50.1
Q ss_pred ccccccCcCCCcEEEEecceecCceEEEeeec-CCceEEEeccceecCc-----ceeeeecceEEeeeeeeecCCccc
Q 026785 82 PTKLRASITPGTVLIILAGRFKGKRVVFLKQL-PSGLLLVSGPFKINGV-----PLRRVNQSYVIGTSTKVDISGVNV 153 (233)
Q Consensus 82 ~~klR~SitpGtvlIlL~G~~~GKRvVfLKqL-~sglLLVTGP~~lNgv-----PlrRv~q~yVIaTstkvdis~vki 153 (233)
.+++ .|..|+.+++++|.++|++-..|+-+ ..+-++|.| +|-+ |-..-.|-=++....-|++|||.+
T Consensus 11 ~rkm--~IkkGD~V~Vi~GkdKGk~GkV~~V~~~~~~V~VEG---vN~~kkh~kp~~~~~~Ggiv~~e~PIh~SNV~l 83 (115)
T 2zjr_R 11 NDKL--HFKKGDTVIVLSGKHKGQTGKVLLALPRDQKVVVEG---VNVITKNVKPSMTNPQGGQEQRELALHASKVAL 83 (115)
T ss_dssp TSCC--SSCTTSEEECCSSSSTTCEEEEEEEETTTTEEEESS---SCBCCCCCCTTSSSCCCCCCCBCCCBCSSSEEC
T ss_pred ceeC--cccCCCEEEEeEcCCCCcEEEEEEEECCCCEEEEeC---cEeEEEecCCCcCCCCCCEEEEEcccCHHHEEE
Confidence 3455 58899999999999999999999997 478999999 7755 221112333444556789999977
No 13
>3r8s_U 50S ribosomal protein L24; protein biosynthesis, RNA, tRNA, transfer RNA, 23S ribosomal subunit, ribosome recycling factor, RRF, ribosome; 3.00A {Escherichia coli} PDB: 2j28_U* 3fik_U 3j19_U 2wwq_U 3oat_U* 3oas_U* 3ofd_U 3ofc_U 3ofr_U* 3ofz_U* 3og0_U 3ofq_U 3r8t_U 3i1n_U 1vs8_U 1vs6_U 1vt2_U 3i1p_U 3i1r_U 3i1t_U ...
Probab=94.05 E-value=0.073 Score=41.41 Aligned_cols=63 Identities=29% Similarity=0.414 Sum_probs=48.2
Q ss_pred CcCCCcEEEEecceecCceEEEeeecCCceEEEeccceecCcceee------eecceEEeeeeeeecCCccc
Q 026785 88 SITPGTVLIILAGRFKGKRVVFLKQLPSGLLLVSGPFKINGVPLRR------VNQSYVIGTSTKVDISGVNV 153 (233)
Q Consensus 88 SitpGtvlIlL~G~~~GKRvVfLKqL~sglLLVTGP~~lNgvPlrR------v~q~yVIaTstkvdis~vki 153 (233)
-|..|+-+++++|.++||.-..|+-+..+-++|.| +|-+--.- -.|-=+|....-|++|||.+
T Consensus 3 ~IkkGD~V~Vi~GkdKGk~GkV~~V~~~~~ViVeG---vN~~kkh~kp~~~~~~~Ggi~~~E~PIh~SNV~l 71 (102)
T 3r8s_U 3 KIRRDDEVIVLTGKDKGKRGKVKNVLSSGKVIVEG---INLVKKHQKPVPALNQPGGIVEKEAAIQVSNVAI 71 (102)
T ss_dssp SSCSSCEEEECSSSSTTCEEEEEEEETTTEEEETT---CSEEEEEECCCSSSSCSCEEEEEECCEEGGGEEE
T ss_pred CccCCCEEEEeEcCCCCeeeEEEEEEeCCEEEEeC---eEEEEeccccCcccCCCCCEEEEECCcCHHHEEE
Confidence 37789999999999999999999998669999998 66432111 22334566667899999976
No 14
>2zkr_t 60S ribosomal protein L26; protein-RNA complex, 60S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=93.87 E-value=0.042 Score=45.32 Aligned_cols=64 Identities=14% Similarity=0.250 Sum_probs=47.6
Q ss_pred CcCCCcEEEEecceecCce-EEEeeec-CCceEEEeccceecCcceeeeecceEEeeeeeeecCCccc--CccChhh
Q 026785 88 SITPGTVLIILAGRFKGKR-VVFLKQL-PSGLLLVSGPFKINGVPLRRVNQSYVIGTSTKVDISGVNV--DKFDDKY 160 (233)
Q Consensus 88 SitpGtvlIlL~G~~~GKR-vVfLKqL-~sglLLVTGP~~lNgvPlrRv~q~yVIaTstkvdis~vki--~~l~D~Y 160 (233)
.|..|+.|+|++|.++|+. -.+|.-+ ..+-++|.| ||- .+.+- +....-|++|||.+ ++.+++-
T Consensus 48 ~IkkGD~V~Vi~GkdKGk~~GkV~~V~~k~~~V~VEg---vn~---~Kp~G---~~~e~PIh~SNV~lv~~~~~k~~ 115 (145)
T 2zkr_t 48 PIRKDDEVQVVRGHYKGQQIGKVVQVYRKKYVIYIER---VQR---EKANG---TTVHVGIHPSKVVITRLKLDKDR 115 (145)
T ss_dssp BCCTTCEEEECSSTTTTCCSEEEEEEETTTTEEEETT---CEE---ECSSC---CEEECCBCGGGEEECC-CCCHHH
T ss_pred ccCCCCEEEEeecCCCCcceeEEEEEECCCCEEEEee---eEe---EcCCC---ceEEeccCHHHEEEEcCcCCchH
Confidence 3889999999999999999 8888887 478899988 663 33332 34445689999988 3455543
No 15
>3j21_U 50S ribosomal protein L24P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=93.47 E-value=0.058 Score=43.20 Aligned_cols=61 Identities=18% Similarity=0.194 Sum_probs=46.9
Q ss_pred cCCCcEEEEecceecCceEEEeeec-CCceEEEeccceecCcceeeeecceEEeeeeeeecCCccc--CccCh
Q 026785 89 ITPGTVLIILAGRFKGKRVVFLKQL-PSGLLLVSGPFKINGVPLRRVNQSYVIGTSTKVDISGVNV--DKFDD 158 (233)
Q Consensus 89 itpGtvlIlL~G~~~GKRvVfLKqL-~sglLLVTGP~~lNgvPlrRv~q~yVIaTstkvdis~vki--~~l~D 158 (233)
|..|+-+++++|.++|+.-..++-+ ..+-++|.| ||-+- .|. +....-|++|||.+ +.++|
T Consensus 46 IkkGD~V~Vi~GkdKGk~GkV~~V~~k~~~V~VEg---vn~~k---~~G---~~~e~pIh~SNV~l~~~~~~d 109 (121)
T 3j21_U 46 VRVGDKVRIMRGDYKGHEGKVVEVDLKRYRIYVEG---ATLRK---TNG---TEVFYPIHPSNVMIIELNLED 109 (121)
T ss_dssp CCSSSEEEECSSSCSSEEEEEEEEETTTTEEEETT---CEEEC---SSS---CEEECCBCGGGEEEEECCCCC
T ss_pred cccCCEEEEeecCCCCcEeEEEEEEecCCEEEEeC---eEEEe---cCC---cEEEcccCHHHeEEEcCccCC
Confidence 7899999999999999999999987 478999998 55332 233 34455789999987 34544
No 16
>1vq8_T 50S ribosomal protein L24P; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: b.34.5.1 PDB: 1vq4_T* 1vq5_T* 1vq6_T* 1vq7_T* 1s72_T* 1vq9_T* 1vqk_T* 1vql_T* 1vqm_T* 1vqn_T* 1vqo_T* 1vqp_T* 1yhq_T* 1yi2_T* 1yij_T* 1yit_T* 1yj9_T* 1yjn_T* 1yjw_T* 2otj_T* ...
Probab=93.38 E-value=0.072 Score=42.65 Aligned_cols=56 Identities=18% Similarity=0.326 Sum_probs=44.1
Q ss_pred cCCCcEEEEecceecCceEEEeeec-CCceEEEeccceecCcceeeeecceEEeeeeeeecCCccc
Q 026785 89 ITPGTVLIILAGRFKGKRVVFLKQL-PSGLLLVSGPFKINGVPLRRVNQSYVIGTSTKVDISGVNV 153 (233)
Q Consensus 89 itpGtvlIlL~G~~~GKRvVfLKqL-~sglLLVTGP~~lNgvPlrRv~q~yVIaTstkvdis~vki 153 (233)
|..|+.+++++|.++|+.--+|+-+ ..+-++|.| +|- .+.+-. ....-|++|||.|
T Consensus 43 IkkGD~V~Vi~G~dKGk~GkV~~V~~k~~~V~VEg---vn~---kK~~Gg---~~e~pIh~SNV~i 99 (120)
T 1vq8_T 43 VNAGDTVEVLRGDFAGEEGEVINVDLDKAVIHVED---VTL---EKTDGE---EVPRPLDTSNVRV 99 (120)
T ss_dssp CCTTCEEEECSSTTTTCEEEEEEEETTTTEEEETT---CEE---ECSSSC---EEECCBCGGGEEE
T ss_pred ccCCCEEEEEecCCCCCEEEEEEEECCCCEEEEeC---eEe---EcCCCC---EEEeeechHHEEE
Confidence 8899999999999999999999987 478999988 652 333333 3334688999987
No 17
>3v2d_Y 50S ribosomal protein L24; ribosome associated inhibitor A, RAIA, protein Y, stress RES stationary phase, ribosome hibernation, ribosome; 2.70A {Thermus thermophilus} PDB: 1vsp_S 2hgj_X 2hgq_X 2hgu_X 1vsa_S 2j03_Y 2jl6_Y 2jl8_Y 2v47_Y 2v49_Y 2wdi_Y 2wdj_Y 2wdl_Y 2wdn_Y 2wh2_Y 2wh4_Y 2wrj_Y 2wrl_Y 2wro_Y 2wrr_Y ...
Probab=93.20 E-value=0.068 Score=42.12 Aligned_cols=63 Identities=22% Similarity=0.348 Sum_probs=48.6
Q ss_pred CcCCCcEEEEecceecCceEEEeeecC-CceEEEeccceecCcce-----eeeecceEEeeeeeeecCCccc
Q 026785 88 SITPGTVLIILAGRFKGKRVVFLKQLP-SGLLLVSGPFKINGVPL-----RRVNQSYVIGTSTKVDISGVNV 153 (233)
Q Consensus 88 SitpGtvlIlL~G~~~GKRvVfLKqL~-sglLLVTGP~~lNgvPl-----rRv~q~yVIaTstkvdis~vki 153 (233)
.|..|+-+++++|.++||.-..|+-+. .+-++|.| +|-+-- ..-.+-=++....-|++|||.+
T Consensus 6 ~IkkGD~V~Vi~GkdKGk~GkV~~V~~~~~~ViVEG---vN~~kkh~kp~~~~~~Ggi~~~E~PIh~SNV~l 74 (110)
T 3v2d_Y 6 HVKKGDTVLVASGKYKGRVGKVKEVLPKKYAVIVEG---VNIVKKAVRVSPKYPQGGFIEKEAPLHASKVRP 74 (110)
T ss_dssp SCCTTSEEEECSSTTTTCEEEEEEEEGGGTEEEETT---SSEEEEECCSSSSSTTCCEEEEECCEEGGGEEE
T ss_pred ccCCCCEEEEeEcCCCCeEeEEEEEECCCCEEEEeC---EEEEEEEeCCCccCCCCCEEEEECCcCHHHeEE
Confidence 378999999999999999999999875 68999998 664311 1112445567777899999977
No 18
>3u5e_Y L33, YL33, 60S ribosomal protein L26-A; translation, ribosome, ribosomal R ribosomal protein, STM1, eukaryotic ribosome; 3.00A {Saccharomyces cerevisiae} PDB: 2wwa_L 2ww9_L 2wwb_L 3o5h_X 3o58_X 3u5i_Y 4b6a_Y 1s1i_U 3izc_Y 3izs_Y 3jyw_U
Probab=91.92 E-value=0.24 Score=40.02 Aligned_cols=62 Identities=16% Similarity=0.182 Sum_probs=47.2
Q ss_pred cCCCcEEEEecceecCceEEEeeecC-CceEEEeccceecCcceeeeecceEEeeeeeeecCCccc--CccChh
Q 026785 89 ITPGTVLIILAGRFKGKRVVFLKQLP-SGLLLVSGPFKINGVPLRRVNQSYVIGTSTKVDISGVNV--DKFDDK 159 (233)
Q Consensus 89 itpGtvlIlL~G~~~GKRvVfLKqL~-sglLLVTGP~~lNgvPlrRv~q~yVIaTstkvdis~vki--~~l~D~ 159 (233)
|.-|+-+++++|.++|+.--.|+-+. .+-++|.| ||-+ ..|..-+ ..-|++|||-| +++++.
T Consensus 50 IkkgD~V~Vi~GkdKGk~GkV~~V~~kk~~V~VEg---Vn~~---K~~G~~~---e~pIh~SNV~i~~~~~dk~ 114 (127)
T 3u5e_Y 50 IRRDDEVLVVRGSKKGQEGKISSVYRLKFAVQVDK---VTKE---KVNGASV---PINLHPSKLVITKLHLDKD 114 (127)
T ss_dssp CCTTCEEEECSSTTTTCEEEEEEEEGGGTEEEEET---CEEE---CSSSCEE---ECCBCGGGEEEEECCCCHH
T ss_pred ccCCCEEEEeecCCCCccceEEEEECCCCEEEEeC---eEEE---CCCCcEE---EcccchHHEEEEccccCcH
Confidence 77899999999999999999999876 68999998 5543 3344322 34689999988 346543
No 19
>2ftc_N Mitochondrial ribosomal protein L24; mitochondrial ribosome, large ribosomal subunit, ribosomal R ribosome; 12.10A {Bos taurus} PDB: 3iy9_N
Probab=91.80 E-value=0.13 Score=39.54 Aligned_cols=58 Identities=19% Similarity=0.255 Sum_probs=44.1
Q ss_pred CcEEEEecceecCceEEEeeec-CCceEEEeccceecCc-----ceeeeecceEEeeeeeeecCCccc
Q 026785 92 GTVLIILAGRFKGKRVVFLKQL-PSGLLLVSGPFKINGV-----PLRRVNQSYVIGTSTKVDISGVNV 153 (233)
Q Consensus 92 GtvlIlL~G~~~GKRvVfLKqL-~sglLLVTGP~~lNgv-----PlrRv~q~yVIaTstkvdis~vki 153 (233)
|+-+++++|.++||.-..|+-+ ..+-++|.| +|-+ |-. -.|-=++....-|++|||.+
T Consensus 1 GD~V~Vi~GkdKGk~GkV~~V~~~~~~ViVeG---vN~~kkh~kp~~-~~~Ggiv~~e~pIh~SNV~l 64 (96)
T 2ftc_N 1 GDTVEILEGKDAGKQGKVVQVIRQRNWVVVGG---LNTHYRYIGKTM-DYRGTMIPSEAPLLHRQVKL 64 (96)
T ss_pred CCEEEEeEcCCCCcEEEEEEEECCCCEEEEeC---CEEEEEEcCCCC-CCCCCEEEEecCcCHHHEEE
Confidence 6789999999999999999987 578999999 6654 211 22344555566788999976
No 20
>4a17_S RPL26, 60S ribosomal protein L21; eukaryotic ribosome, ribosome, eukaryotic initiation factor 60S, translation, large ribosomal subunit; 3.52A {Tetrahymena thermophila} PDB: 4a1a_S 4a1c_S 4a1e_S
Probab=90.60 E-value=0.23 Score=40.50 Aligned_cols=61 Identities=18% Similarity=0.259 Sum_probs=46.4
Q ss_pred cCCCcEEEEecceecCceEEEeeecC-CceEEEeccceecCcceeeeecceEEeeeeeeecCCccc--CccCh
Q 026785 89 ITPGTVLIILAGRFKGKRVVFLKQLP-SGLLLVSGPFKINGVPLRRVNQSYVIGTSTKVDISGVNV--DKFDD 158 (233)
Q Consensus 89 itpGtvlIlL~G~~~GKRvVfLKqL~-sglLLVTGP~~lNgvPlrRv~q~yVIaTstkvdis~vki--~~l~D 158 (233)
|.-|+-+++++|.++|+.--.|+-+. .+-++|.| ||-+ ..|.. ..-.-|++|||-| +++++
T Consensus 49 IkkgD~V~Vi~GkdKGk~GkV~~V~~kk~~V~VEg---Vn~~---K~~G~---~~e~pIh~SNV~i~~~k~dk 112 (135)
T 4a17_S 49 VRKDDEVLIVRGKFKGNKGKVTQVYRKKWAIHVEK---ISKN---KLNGA---PYQIPLSASQLVLTKLKLDK 112 (135)
T ss_dssp CCTTCEEEECSSTTTTCEEEEEEEETTTTEEEETT---CCEE---ETTTE---EECCCBCGGGEEEEECCCCH
T ss_pred ccCCCEEEEeecCCCCceeeEEEEEcCCCEEEEeC---eEEE---cCCCC---EEEcccchHHEEEEcccCCc
Confidence 77899999999999999999999875 68999888 5543 33432 2244789999988 34543
No 21
>3iz5_Y 60S ribosomal protein L26 (L24P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} PDB: 3izr_Y
Probab=90.26 E-value=0.28 Score=40.65 Aligned_cols=66 Identities=21% Similarity=0.258 Sum_probs=49.1
Q ss_pred ccccccCcCCCcEEEEecceecCceEEEeeecC-CceEEEeccceecCcceeeeecceEEeeeeeeecCCccc--CccCh
Q 026785 82 PTKLRASITPGTVLIILAGRFKGKRVVFLKQLP-SGLLLVSGPFKINGVPLRRVNQSYVIGTSTKVDISGVNV--DKFDD 158 (233)
Q Consensus 82 ~~klR~SitpGtvlIlL~G~~~GKRvVfLKqL~-sglLLVTGP~~lNgvPlrRv~q~yVIaTstkvdis~vki--~~l~D 158 (233)
.+.++ |..|+-|++++|.++|+.--+|+-+. .+-++|.| ||-+ .-|..- .-.-|++|||-| +++++
T Consensus 44 vRs~~--IkKGD~V~Vi~GkdKGk~GkVl~V~~kk~~V~VEG---VN~~---K~~G~~---~eapIh~SNV~i~~~k~dk 112 (150)
T 3iz5_Y 44 VRSIP--IRKDDEVQVVRGSYKGREGKVVQVYRRRWVIHVER---ITRE---KVNGST---VNVGIHPSKVVVTKLKLDK 112 (150)
T ss_dssp CSEEE--CCSSSEEEECSSTTTTCEEEEEEEETTTTEEEETT---CEEE---CTTSCE---EECCBCGGGEEEEECCCCS
T ss_pred Ccccc--cCCCCEEEEeecCCCCccceEEEEEcCCCEEEEeC---cEEE---eCCCCE---EecccchHHEEEEcccCCh
Confidence 44444 77999999999999999999999876 68899888 5543 334432 244789999988 34544
No 22
>3bbo_W Ribosomal protein L24; large ribosomal subunit, spinach chloroplast ribosome, ribonucleoprotein particle, macromolecular complex; 9.40A {Spinacea oleracea}
Probab=87.01 E-value=0.083 Score=45.43 Aligned_cols=63 Identities=17% Similarity=0.199 Sum_probs=47.1
Q ss_pred CcCCCcEEEEecceecCceEEEeeec-CCceEEEeccceecCcce-----eeeecceEEeeeeeeecCCccc
Q 026785 88 SITPGTVLIILAGRFKGKRVVFLKQL-PSGLLLVSGPFKINGVPL-----RRVNQSYVIGTSTKVDISGVNV 153 (233)
Q Consensus 88 SitpGtvlIlL~G~~~GKRvVfLKqL-~sglLLVTGP~~lNgvPl-----rRv~q~yVIaTstkvdis~vki 153 (233)
.|..|+-+++++|.++||.-.+|+-+ ..+-++|.| +|-+-- ..-.|-=+|....-|++|||.+
T Consensus 68 kIkKGD~V~VIaGkDKGK~GkVl~V~~k~~rViVEG---VN~vkKH~Kp~~~~~~GgIv~kEaPIhiSNV~L 136 (191)
T 3bbo_W 68 HVKVGDTVKVISGGEKGKIGEISKIHKHNSTVIIKD---LNFKTKHVKSKEEGEQGQIIKIEAAIHSSNVML 136 (191)
T ss_dssp CSCCSSCEEECSSSSTTCCCSCCCCCSSSCCCCCSS---CCCCCCBCCSCCSSSCCBSSCCCCCCCGGGEEE
T ss_pred eeecCCEEEEeecCCCCceEEEEEEECCCCEEEEeC---CEEEEEecCCcccCCCCCEEEEecCcCHHHeEE
Confidence 48899999999999999999999987 478899999 776532 1111233444456788899876
No 23
>2do3_A Transcription elongation factor SPT5; KOW motif, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.34.5.5
Probab=81.39 E-value=2.4 Score=30.90 Aligned_cols=34 Identities=24% Similarity=0.449 Sum_probs=27.8
Q ss_pred ccccccCcCCCcEEEEecceecCceEEEeeecCC
Q 026785 82 PTKLRASITPGTVLIILAGRFKGKRVVFLKQLPS 115 (233)
Q Consensus 82 ~~klR~SitpGtvlIlL~G~~~GKRvVfLKqL~s 115 (233)
+..||+-+.+|+-+-++.|+|+|---..++.-++
T Consensus 11 ~~~LrK~F~~GDHVkVi~G~~~getGlVV~v~~d 44 (69)
T 2do3_A 11 AQELRKYFKMGDHVKVIAGRFEGDTGLIVRVEEN 44 (69)
T ss_dssp CCCCCSSCCTTCEEEESSSTTTTCEEEEEEECSS
T ss_pred HHHceeeccCCCeEEEeccEEcCceEEEEEEeCC
Confidence 5678999999999999999999976666555444
No 24
>3ujm_A Rasputin; NTF2-like fold, RAS signaling, signaling protein; HET: EPE; 2.74A {Drosophila melanogaster}
Probab=53.08 E-value=8.1 Score=29.56 Aligned_cols=26 Identities=31% Similarity=0.726 Sum_probs=22.5
Q ss_pred eEEEeccceecCcceeeeecceEEee
Q 026785 117 LLLVSGPFKINGVPLRRVNQSYVIGT 142 (233)
Q Consensus 117 lLLVTGP~~lNgvPlrRv~q~yVIaT 142 (233)
|++|+|=+..++-|.|+.+|.|+++-
T Consensus 79 li~V~G~l~~~~~~~r~F~QtF~L~p 104 (120)
T 3ujm_A 79 VVQVTGELSNDGQPMRRFTQTFVLAA 104 (120)
T ss_dssp EEEEEEEEESTTCCCEEEEEEEEEEE
T ss_pred EEEEEEEEEeCCCCCceEEEEEEEEE
Confidence 56778888888889999999999985
No 25
>3q90_A RAS GTPase-activating protein-binding protein 1; structural genomics, structural genomics consortium, SGC, NT (A+B proteins); 1.70A {Homo sapiens} SCOP: d.17.4.0
Probab=50.75 E-value=6.6 Score=30.93 Aligned_cols=27 Identities=30% Similarity=0.473 Sum_probs=22.3
Q ss_pred eEEEeccceecCcceeeeecceEEeee
Q 026785 117 LLLVSGPFKINGVPLRRVNQSYVIGTS 143 (233)
Q Consensus 117 lLLVTGP~~lNgvPlrRv~q~yVIaTs 143 (233)
|++|+|=+..++-|.|+.+|.|+++-.
T Consensus 92 lI~V~G~l~~~~~~~~~F~QtF~L~p~ 118 (140)
T 3q90_A 92 VVQVMGLLSNNNQALRRFMQTFVLAPE 118 (140)
T ss_dssp EEEEEEEEECTTCCCEEEEEEEEEEEC
T ss_pred EEEEEEEEecCCCCccEEEEEEEEeec
Confidence 566777777888899999999999863
No 26
>2rm4_A CG6311-PB, DM EDC3; enhancer of mRNA decapping, P-BODY component, SM-like protein,, protein binding; NMR {Drosophila melanogaster}
Probab=38.86 E-value=11 Score=29.37 Aligned_cols=47 Identities=34% Similarity=0.624 Sum_probs=32.8
Q ss_pred cceecCceEEEeeecCCceEEEeccceecCcceeeeecceEEeeeeeeecCCccc
Q 026785 99 AGRFKGKRVVFLKQLPSGLLLVSGPFKINGVPLRRVNQSYVIGTSTKVDISGVNV 153 (233)
Q Consensus 99 ~G~~~GKRvVfLKqL~sglLLVTGP~~lNgvPlrRv~q~yVIaTstkvdis~vki 153 (233)
.|-|+|. +++++..-+-++-|| =||+||+..+..-++.. .||..++|
T Consensus 23 LGVyQG~----I~~V~~~~ItL~kaF-rNGiplk~~~~EVtLsa---~DI~~L~I 69 (103)
T 2rm4_A 23 LGVFQGL----IKQISAEEITIVRAF-RNGVPLRKQNAEVVLKC---TDIRSIDL 69 (103)
T ss_dssp TCEEEEE----EEEEETTEEEEEEEE-ETTEECSCSSSCEEEET---TTEEEEEE
T ss_pred ceEeeEE----EEEcccceeEEhhhh-hcCcCcCCCCceEEEEe---cchhheee
Confidence 3567773 566655558888999 59999999887766543 36666655
No 27
>3nv0_B NTF2-related export protein; NTF2-like domain, beta sheet heterodimer interface, nucleopo binding pocket, water mediated interface; 1.84A {Caenorhabditis elegans}
Probab=38.21 E-value=20 Score=29.00 Aligned_cols=26 Identities=31% Similarity=0.565 Sum_probs=21.2
Q ss_pred eEEEeccceecCcceeeeecceEEee
Q 026785 117 LLLVSGPFKINGVPLRRVNQSYVIGT 142 (233)
Q Consensus 117 lLLVTGP~~lNgvPlrRv~q~yVIaT 142 (233)
++.|+|=+.+++-|.|+.+|-||++-
T Consensus 113 lI~V~G~l~~~~~~~r~F~QtFvL~p 138 (154)
T 3nv0_B 113 LLNVAGAVTVDGDSKRAFTQTLLLGV 138 (154)
T ss_dssp EEEEEEEEEETTSCCEEEEEEEEEEE
T ss_pred EEEEEEEEEECCCCceeEEEEEEEEE
Confidence 45677777778888999999999984
No 28
>1zo2_A NTF2, nuclear transport factor 2; structural genomics, structural genomics consortium, SGC, transport protein; 1.60A {Cryptosporidium parvum} SCOP: d.17.4.2
Probab=35.91 E-value=23 Score=27.33 Aligned_cols=26 Identities=19% Similarity=0.330 Sum_probs=18.4
Q ss_pred EEEeccceecCcceeeeecceEEeee
Q 026785 118 LLVSGPFKINGVPLRRVNQSYVIGTS 143 (233)
Q Consensus 118 LLVTGP~~lNgvPlrRv~q~yVIaTs 143 (233)
+.|+|=+..++-|.|+.+|-|+++-.
T Consensus 87 I~V~G~~~~~~~~~~~F~qtF~L~p~ 112 (129)
T 1zo2_A 87 VFVTGDVRIDDGQPLKFSQVFNLMPS 112 (129)
T ss_dssp EEEEEEEEETTCCCEEEEEEEEEEEC
T ss_pred EEEEEEEEECCCCcceEEEEEEEEEc
Confidence 34444444556689999999999864
No 29
>1gy6_A Nuclear transport factor 2; 1.6A {Rattus norvegicus} SCOP: d.17.4.2 PDB: 1a2k_A 1oun_A 1ar0_A 1u5o_A 1ask_A 1gy5_A 1jb5_A 1jb4_A 1jb2_A 1qma_A
Probab=34.08 E-value=26 Score=26.91 Aligned_cols=25 Identities=20% Similarity=0.429 Sum_probs=17.2
Q ss_pred EEeccceecCcceeeeecceEEeee
Q 026785 119 LVSGPFKINGVPLRRVNQSYVIGTS 143 (233)
Q Consensus 119 LVTGP~~lNgvPlrRv~q~yVIaTs 143 (233)
.|+|=+..++-|.|+.+|-|+++-.
T Consensus 84 ~V~G~~~~~~~~~~~F~qtF~L~p~ 108 (127)
T 1gy6_A 84 MVVGQLKADEDPIMGFHQMFLLKNI 108 (127)
T ss_dssp EEEEEEEETTSCCEEEEEEEEEEEE
T ss_pred EEEEEEEECCCCcceEeEEEEEEEe
Confidence 3444444445588999999999853
No 30
>2qiy_A UBP3-associated protein BRE5; deubiquitylation, ubiquitin-specific processing proteases(UB NTF2, protein-protein recognition; 1.69A {Saccharomyces cerevisiae} SCOP: d.17.4.2 PDB: 1zx2_A
Probab=33.72 E-value=26 Score=27.78 Aligned_cols=27 Identities=22% Similarity=0.527 Sum_probs=21.5
Q ss_pred eEEEeccceecCcceeeeecceEEeee
Q 026785 117 LLLVSGPFKINGVPLRRVNQSYVIGTS 143 (233)
Q Consensus 117 lLLVTGP~~lNgvPlrRv~q~yVIaTs 143 (233)
++.|+|=+..++-|.|+..|-||++-.
T Consensus 105 lI~V~G~~~~~~~~~r~F~qtFvL~p~ 131 (154)
T 2qiy_A 105 LIMATGEMFWTGTPVYKFCQTFILLPS 131 (154)
T ss_dssp EEEEEEEEEETTCCCEEEEEEEEEEEC
T ss_pred EEEEEEEEEECCCCCceEEEEEEEEEe
Confidence 455677777777799999999999864
No 31
>1jkg_A P15; NTF2-like domain, transport protein; 1.90A {Homo sapiens} SCOP: d.17.4.2 PDB: 1jn5_A
Probab=32.45 E-value=28 Score=27.09 Aligned_cols=24 Identities=25% Similarity=0.581 Sum_probs=17.9
Q ss_pred EEeccceecCcceeeeecceEEee
Q 026785 119 LVSGPFKINGVPLRRVNQSYVIGT 142 (233)
Q Consensus 119 LVTGP~~lNgvPlrRv~q~yVIaT 142 (233)
.|+|=+.+++-|.|+.+|-|+++-
T Consensus 94 ~V~G~~~~~~~~~r~F~qtF~L~p 117 (140)
T 1jkg_A 94 VICGSVKFEGNKQRDFNQNFILTA 117 (140)
T ss_dssp EEEEEEEETTSCCEEEEEEEEEEE
T ss_pred EEEEEEEECCCCceeeeEEEEEEe
Confidence 345555556668999999999985
No 32
>1gy7_A Nuclear transport factor 2; protein transport; 1.6A {Saccharomyces cerevisiae} SCOP: d.17.4.2 PDB: 1gyb_A
Probab=28.87 E-value=36 Score=26.03 Aligned_cols=24 Identities=17% Similarity=0.333 Sum_probs=16.6
Q ss_pred EEeccceecCc-ceeeeecceEEee
Q 026785 119 LVSGPFKINGV-PLRRVNQSYVIGT 142 (233)
Q Consensus 119 LVTGP~~lNgv-PlrRv~q~yVIaT 142 (233)
.|+|=+..++- |.|+.+|-|+++-
T Consensus 83 ~V~G~~~~~~~~~~~~F~qtF~L~p 107 (125)
T 1gy7_A 83 MITGDLLIDEEQNPQRFSQVFHLIP 107 (125)
T ss_dssp EEEEEEEETTCSSCEEEEEEEEEEE
T ss_pred EEEEEEEECCCCCCccEeEEEEEEE
Confidence 34444444554 8899999999975
No 33
>2e6z_A Transcription elongation factor SPT5; KOW motif, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=27.07 E-value=37 Score=23.07 Aligned_cols=26 Identities=15% Similarity=0.264 Sum_probs=23.0
Q ss_pred cCcCCCcEEEEecceecCceEEEeee
Q 026785 87 ASITPGTVLIILAGRFKGKRVVFLKQ 112 (233)
Q Consensus 87 ~SitpGtvlIlL~G~~~GKRvVfLKq 112 (233)
.++.||+.+-|..|.|+|-..++..-
T Consensus 6 ~~f~~GD~V~V~~Gpf~g~~G~V~ev 31 (59)
T 2e6z_A 6 SGFQPGDNVEVCEGELINLQGKILSV 31 (59)
T ss_dssp SSCCTTSEEEECSSTTTTCEEEECCC
T ss_pred ccCCCCCEEEEeecCCCCCEEEEEEE
Confidence 45889999999999999999888775
No 34
>1dgw_Y Canavalin; duplicated swiss-roll beta barrels, loops with alpha helices merohedral/ hemihedral twinning, plant protein; 1.70A {Canavalia ensiformis} SCOP: b.82.1.2 PDB: 1dgr_Y
Probab=24.83 E-value=55 Score=24.55 Aligned_cols=49 Identities=24% Similarity=0.381 Sum_probs=32.9
Q ss_pred ccccccCcCCCcEEEEecceecCceEEEeeecCCceEEEeccceecCcceeeeecceEEee
Q 026785 82 PTKLRASITPGTVLIILAGRFKGKRVVFLKQLPSGLLLVSGPFKINGVPLRRVNQSYVIGT 142 (233)
Q Consensus 82 ~~klR~SitpGtvlIlL~G~~~GKRvVfLKqL~sglLLVTGP~~lNgvPlrRv~q~yVIaT 142 (233)
.++++..+.+|+|+||-+|. +|..+.- ++|-+| | |++|. +-|++.-+|=
T Consensus 3 ~~~~~~~l~~G~v~vVPq~~-----~v~~~A~-~~le~v-~-F~tna----~~~~~~~LAG 51 (93)
T 1dgw_Y 3 LRRYAATLSEGDIIVIPSSF-----PVALKAA-SDLNMV-G-IGVNA----ENNERNFLAG 51 (93)
T ss_dssp EEEEEEEECTTCEEEECTTC-----CEEEEES-SSEEEE-E-EEESC----TTCCEEESSS
T ss_pred cchhhceecCCcEEEECCCC-----ceeEEec-CCeEEE-E-EEecC----CCCeeeeccC
Confidence 45778889999999999995 4455544 565444 3 66666 3356666653
No 35
>2ckk_A KIN17; beta barrel, ribosomal protein, ribonucleoprotein, nuclear protein; 1.45A {Homo sapiens}
Probab=21.55 E-value=49 Score=26.01 Aligned_cols=23 Identities=22% Similarity=0.537 Sum_probs=19.3
Q ss_pred CCcEEEEecceecCceEEEeeec
Q 026785 91 PGTVLIILAGRFKGKRVVFLKQL 113 (233)
Q Consensus 91 pGtvlIlL~G~~~GKRvVfLKqL 113 (233)
+|.-+.|+.|.|||....++.--
T Consensus 73 ~g~~V~Iv~G~~rG~~g~L~~id 95 (127)
T 2ckk_A 73 PGKRILVLNGGYRGNEGTLESIN 95 (127)
T ss_dssp TTCEEEECSSTTTTCEEEEEEEE
T ss_pred CCCEEEEEecccCCcEEEEEEEe
Confidence 58888888899999999888763
No 36
>1nz9_A Transcription antitermination protein NUSG; transcription elongation, riken structural genomics/proteomics initiative, RSGI; NMR {Thermus thermophilus} SCOP: b.34.5.4
Probab=20.46 E-value=1.4e+02 Score=19.52 Aligned_cols=33 Identities=15% Similarity=0.199 Sum_probs=26.2
Q ss_pred CcCCCcEEEEecceecCceEEEeeec-CCceEEE
Q 026785 88 SITPGTVLIILAGRFKGKRVVFLKQL-PSGLLLV 120 (233)
Q Consensus 88 SitpGtvlIlL~G~~~GKRvVfLKqL-~sglLLV 120 (233)
.+.+|+.+-+..|.|+|-...+.+.- +.+-+.|
T Consensus 4 ~~~~Gd~V~V~~Gpf~g~~g~v~~v~~~k~~v~V 37 (58)
T 1nz9_A 4 AFREGDQVRVVSGPFADFTGTVTEINPERGKVKV 37 (58)
T ss_dssp SCCTTCEEEECSGGGTTCEEEEEEEETTTTEEEE
T ss_pred ccCCCCEEEEeecCCCCcEEEEEEEcCCCCEEEE
Confidence 57799999999999999999888863 3455544
Done!