Query 026787
Match_columns 233
No_of_seqs 229 out of 737
Neff 5.4
Searched_HMMs 29240
Date Mon Mar 25 22:10:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026787.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/026787hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2dkt_A Ring finger and CHY zin 100.0 4.9E-57 1.7E-61 370.1 11.5 139 3-151 4-142 (143)
2 2ecm_A Ring finger and CHY zin 99.4 3.2E-14 1.1E-18 95.9 3.2 52 148-200 3-54 (55)
3 2k2d_A Ring finger and CHY zin 99.4 2.8E-14 9.7E-19 106.2 1.5 41 192-232 1-41 (79)
4 1iym_A EL5; ring-H2 finger, ub 99.4 2.5E-13 8.6E-18 91.6 4.0 50 149-200 4-54 (55)
5 2ep4_A Ring finger protein 24; 99.4 2.7E-13 9.1E-18 96.9 3.4 56 146-203 11-66 (74)
6 2ecl_A Ring-box protein 2; RNF 99.4 5.9E-13 2E-17 97.9 5.1 49 150-200 26-75 (81)
7 2kiz_A E3 ubiquitin-protein li 99.3 4.8E-13 1.6E-17 94.3 3.8 54 146-201 10-63 (69)
8 1x4j_A Ring finger protein 38; 99.3 2.5E-13 8.5E-18 97.6 2.2 52 148-201 21-72 (75)
9 1v87_A Deltex protein 2; ring- 99.3 1E-12 3.5E-17 101.2 4.3 56 147-202 22-95 (114)
10 2l0b_A E3 ubiquitin-protein li 99.3 1.1E-12 3.7E-17 98.2 3.3 51 148-200 38-88 (91)
11 2ect_A Ring finger protein 126 99.3 1.4E-12 4.9E-17 94.0 3.6 52 148-201 13-64 (78)
12 3ng2_A RNF4, snurf, ring finge 99.3 1.8E-12 6.3E-17 91.3 2.7 53 148-201 8-63 (71)
13 2ea6_A Ring finger protein 4; 99.2 2.3E-12 7.8E-17 90.0 2.8 52 148-200 13-67 (69)
14 2xeu_A Ring finger protein 4; 99.2 3.1E-12 1.1E-16 88.1 3.0 52 149-201 2-56 (64)
15 1g25_A CDK-activating kinase a 99.2 6.2E-12 2.1E-16 87.9 4.3 51 150-200 3-54 (65)
16 1e4u_A Transcriptional repress 99.2 2E-12 6.8E-17 95.3 1.2 61 149-211 10-72 (78)
17 1chc_A Equine herpes virus-1 r 99.2 7.9E-12 2.7E-16 87.6 2.8 50 149-202 4-53 (68)
18 2ecn_A Ring finger protein 141 99.2 1.4E-12 4.6E-17 92.2 -1.3 53 148-206 13-65 (70)
19 2ct2_A Tripartite motif protei 99.2 1.6E-11 5.5E-16 89.7 3.9 52 149-200 14-67 (88)
20 3dpl_R Ring-box protein 1; ubi 99.1 2.3E-11 8E-16 94.5 4.4 49 150-199 48-99 (106)
21 2d8t_A Dactylidin, ring finger 99.1 2.5E-11 8.4E-16 86.3 3.2 49 148-201 13-61 (71)
22 2csy_A Zinc finger protein 183 99.1 4.3E-11 1.5E-15 87.0 2.9 48 149-201 14-61 (81)
23 4ayc_A E3 ubiquitin-protein li 99.1 7.4E-11 2.5E-15 94.3 4.4 68 151-225 54-124 (138)
24 1t1h_A Gspef-atpub14, armadill 99.1 7.5E-11 2.6E-15 84.8 4.0 49 148-200 6-54 (78)
25 4ap4_A E3 ubiquitin ligase RNF 99.1 5.5E-11 1.9E-15 92.2 3.3 53 148-201 5-60 (133)
26 2djb_A Polycomb group ring fin 99.0 6E-11 2.1E-15 84.5 2.7 49 149-201 14-62 (72)
27 2ysl_A Tripartite motif-contai 99.0 9.8E-11 3.4E-15 82.9 3.8 49 148-200 18-68 (73)
28 2ecy_A TNF receptor-associated 99.0 6.8E-11 2.3E-15 82.7 2.9 48 150-201 15-62 (66)
29 2yur_A Retinoblastoma-binding 99.0 9.8E-11 3.3E-15 84.1 2.9 53 150-206 15-69 (74)
30 3lrq_A E3 ubiquitin-protein li 99.0 1.2E-10 4.2E-15 88.3 3.1 48 150-200 22-69 (100)
31 2d8s_A Cellular modulator of i 99.0 1.3E-10 4.6E-15 85.9 2.9 52 147-200 12-69 (80)
32 3fl2_A E3 ubiquitin-protein li 99.0 2.8E-10 9.6E-15 89.0 3.7 62 150-215 52-115 (124)
33 4a0k_B E3 ubiquitin-protein li 99.0 8.8E-11 3E-15 93.0 0.5 50 149-199 47-110 (117)
34 2ysj_A Tripartite motif-contai 99.0 3.8E-10 1.3E-14 78.1 3.6 43 149-195 19-63 (63)
35 3ztg_A E3 ubiquitin-protein li 99.0 1.3E-10 4.5E-15 86.0 1.4 48 149-200 12-61 (92)
36 3l11_A E3 ubiquitin-protein li 98.9 1.2E-10 4.1E-15 89.9 0.9 48 150-201 15-62 (115)
37 2ecj_A Tripartite motif-contai 98.9 5E-10 1.7E-14 75.7 3.7 43 149-195 14-58 (58)
38 2egp_A Tripartite motif-contai 98.9 1.7E-10 5.9E-15 82.6 1.3 48 149-200 11-64 (79)
39 2y43_A E3 ubiquitin-protein li 98.9 5E-10 1.7E-14 84.2 3.6 48 150-201 22-69 (99)
40 1rmd_A RAG1; V(D)J recombinati 98.9 4E-10 1.4E-14 87.0 2.8 65 150-218 23-89 (116)
41 2ckl_B Ubiquitin ligase protei 98.9 6.6E-10 2.3E-14 90.9 4.2 48 151-201 55-102 (165)
42 4ap4_A E3 ubiquitin ligase RNF 98.9 6.1E-10 2.1E-14 86.3 3.7 53 148-201 70-125 (133)
43 2ecw_A Tripartite motif-contai 98.9 8E-10 2.7E-14 79.6 4.0 48 149-200 18-70 (85)
44 2ecv_A Tripartite motif-contai 98.9 9.2E-10 3.1E-14 79.3 3.5 48 149-200 18-70 (85)
45 3hct_A TNF receptor-associated 98.9 5.9E-10 2E-14 86.7 2.5 65 150-218 18-83 (118)
46 2ckl_A Polycomb group ring fin 98.9 8.4E-10 2.9E-14 84.3 3.0 49 149-201 14-62 (108)
47 1z6u_A NP95-like ring finger p 98.8 2E-09 7E-14 87.7 3.1 63 150-216 78-142 (150)
48 1jm7_A BRCA1, breast cancer ty 98.8 2.6E-09 8.8E-14 81.3 3.1 47 150-200 21-69 (112)
49 2vje_A E3 ubiquitin-protein li 98.7 3.8E-09 1.3E-13 74.3 1.7 54 146-204 4-60 (64)
50 2vje_B MDM4 protein; proto-onc 98.6 6.2E-09 2.1E-13 73.0 1.6 53 148-205 5-60 (63)
51 1bor_A Transcription factor PM 98.6 5.8E-09 2E-13 71.2 0.8 45 148-200 4-48 (56)
52 4ic3_A E3 ubiquitin-protein li 98.6 9.2E-09 3.1E-13 74.0 1.4 44 150-202 24-68 (74)
53 3knv_A TNF receptor-associated 98.6 6.1E-09 2.1E-13 84.2 0.5 65 150-218 31-105 (141)
54 1jm7_B BARD1, BRCA1-associated 98.6 2.5E-08 8.5E-13 77.3 3.3 45 150-200 22-66 (117)
55 3hcs_A TNF receptor-associated 98.5 1.9E-08 6.6E-13 82.4 2.1 65 150-218 18-83 (170)
56 2y1n_A E3 ubiquitin-protein li 98.5 7.8E-08 2.7E-12 89.9 4.2 49 149-201 331-379 (389)
57 2ct0_A Non-SMC element 1 homol 98.5 8.5E-08 2.9E-12 70.2 3.3 48 150-200 15-63 (74)
58 2ea5_A Cell growth regulator w 98.4 7.2E-08 2.5E-12 68.7 2.0 51 147-206 12-63 (68)
59 2ecg_A Baculoviral IAP repeat- 98.4 6.2E-08 2.1E-12 69.6 1.6 44 150-202 25-69 (75)
60 2kr4_A Ubiquitin conjugation f 98.4 1.4E-07 4.9E-12 69.7 2.9 47 149-200 13-59 (85)
61 1wim_A KIAA0161 protein; ring 98.3 2.3E-07 7.8E-12 69.2 3.5 49 149-198 4-61 (94)
62 2kre_A Ubiquitin conjugation f 98.3 2.2E-07 7.7E-12 70.9 3.3 47 149-200 28-74 (100)
63 1vyx_A ORF K3, K3RING; zinc-bi 98.3 2.8E-07 9.5E-12 64.5 3.3 50 146-199 2-57 (60)
64 2c2l_A CHIP, carboxy terminus 98.3 3.4E-07 1.2E-11 78.9 4.6 51 146-200 204-254 (281)
65 1wgm_A Ubiquitin conjugation f 98.3 3.8E-07 1.3E-11 69.4 3.6 47 149-200 21-68 (98)
66 2yu4_A E3 SUMO-protein ligase 98.3 4.4E-07 1.5E-11 68.1 3.8 46 149-198 6-59 (94)
67 2yho_A E3 ubiquitin-protein li 98.3 8.1E-08 2.8E-12 70.3 -0.6 48 150-206 18-66 (79)
68 3k1l_B Fancl; UBC, ring, RWD, 98.1 4.8E-07 1.6E-11 83.7 1.4 53 148-200 306-372 (381)
69 2f42_A STIP1 homology and U-bo 98.0 6.1E-06 2.1E-10 69.5 4.9 48 149-200 105-152 (179)
70 3htk_C E3 SUMO-protein ligase 97.8 6.1E-06 2.1E-10 73.6 2.5 50 148-200 179-231 (267)
71 3t6p_A Baculoviral IAP repeat- 97.8 3.7E-06 1.3E-10 77.2 1.0 44 150-202 295-339 (345)
72 3vk6_A E3 ubiquitin-protein li 97.4 8.7E-05 3E-09 57.2 2.8 50 152-204 3-52 (101)
73 2bay_A PRE-mRNA splicing facto 97.3 8.3E-05 2.8E-09 51.8 1.7 48 149-200 2-49 (61)
74 3nw0_A Non-structural maintena 95.8 0.0054 1.8E-07 53.4 3.5 47 150-199 180-227 (238)
75 2ko5_A Ring finger protein Z; 90.8 0.092 3.1E-06 40.0 1.8 44 150-200 28-72 (99)
76 2jrp_A Putative cytoplasmic pr 90.6 0.07 2.4E-06 39.5 0.9 28 67-99 33-60 (81)
77 2jun_A Midline-1; B-BOX, TRIM, 89.5 0.18 6.2E-06 37.0 2.4 35 149-185 2-38 (101)
78 2lbm_A Transcriptional regulat 87.8 0.45 1.5E-05 38.5 3.8 65 145-214 58-138 (142)
79 2ysm_A Myeloid/lymphoid or mix 87.3 0.12 4.2E-06 39.1 0.2 83 112-198 9-104 (111)
80 2jne_A Hypothetical protein YF 86.0 0.32 1.1E-05 37.2 1.9 9 89-97 80-88 (101)
81 3v43_A Histone acetyltransfera 85.3 0.19 6.6E-06 38.4 0.4 76 119-197 21-111 (112)
82 2kwj_A Zinc finger protein DPF 81.9 0.093 3.2E-06 40.4 -2.7 85 112-200 3-110 (114)
83 4bbq_A Lysine-specific demethy 76.5 0.6 2E-05 35.4 0.4 27 171-197 80-113 (117)
84 1we9_A PHD finger family prote 73.2 0.38 1.3E-05 32.9 -1.4 50 149-198 5-58 (64)
85 2ysm_A Myeloid/lymphoid or mix 73.1 3.3 0.00011 31.0 3.8 69 64-136 6-81 (111)
86 1weo_A Cellulose synthase, cat 72.8 4.2 0.00014 30.6 4.1 56 145-200 11-69 (93)
87 2lri_C Autoimmune regulator; Z 68.8 4 0.00014 28.4 3.1 47 148-198 10-59 (66)
88 1zfo_A LAsp-1; LIM domain, zin 66.1 1.7 5.7E-05 25.8 0.6 30 149-181 2-31 (31)
89 1f62_A Transcription factor WS 64.8 3.1 0.00011 26.9 1.8 46 152-198 2-50 (51)
90 3lqh_A Histone-lysine N-methyl 61.8 2.7 9.2E-05 35.0 1.3 51 151-201 3-66 (183)
91 2k16_A Transcription initiatio 60.5 1.7 5.9E-05 30.4 -0.1 49 151-200 19-70 (75)
92 2dkt_A Ring finger and CHY zin 60.0 2.8 9.6E-05 33.9 1.1 32 89-120 97-128 (143)
93 3ql9_A Transcriptional regulat 59.2 10 0.00034 30.0 4.1 56 141-200 48-113 (129)
94 1g47_A Pinch protein; LIM doma 59.1 4.9 0.00017 27.4 2.1 44 148-202 9-52 (77)
95 2egq_A FHL1 protein; LIM domai 58.7 3.7 0.00013 28.1 1.4 41 150-201 15-58 (77)
96 1x61_A Thyroid receptor intera 58.0 5.5 0.00019 26.8 2.2 40 150-200 5-44 (72)
97 1wil_A KIAA1045 protein; ring 57.9 8.6 0.0003 28.6 3.3 44 148-196 13-74 (89)
98 2l5u_A Chromodomain-helicase-D 55.7 5.1 0.00017 27.2 1.7 49 146-198 7-58 (61)
99 1x63_A Skeletal muscle LIM-pro 54.2 5.2 0.00018 27.7 1.5 41 150-201 15-55 (82)
100 1x4l_A Skeletal muscle LIM-pro 52.0 8.4 0.00029 25.9 2.3 41 150-201 5-47 (72)
101 1iml_A CRIP, cysteine rich int 51.3 3.9 0.00013 28.1 0.5 37 153-201 3-39 (76)
102 3mjh_B Early endosome antigen 50.4 8 0.00027 23.8 1.7 16 189-204 5-20 (34)
103 1wep_A PHF8; structural genomi 49.7 9 0.00031 27.1 2.2 49 151-200 13-65 (79)
104 1wyh_A SLIM 2, skeletal muscle 49.5 5.7 0.0002 26.7 1.1 41 150-201 5-45 (72)
105 2jrp_A Putative cytoplasmic pr 49.1 7.3 0.00025 28.6 1.7 15 122-137 50-64 (81)
106 1mm2_A MI2-beta; PHD, zinc fin 47.6 6.1 0.00021 26.7 1.0 49 147-199 6-57 (61)
107 2cu8_A Cysteine-rich protein 2 46.6 7.1 0.00024 26.6 1.3 40 150-201 9-48 (76)
108 2e6s_A E3 ubiquitin-protein li 46.5 8.5 0.00029 27.5 1.7 65 121-197 7-76 (77)
109 2jvx_A NF-kappa-B essential mo 46.4 6.6 0.00023 23.2 0.9 16 189-204 3-18 (28)
110 2kgg_A Histone demethylase jar 46.4 3.7 0.00013 26.9 -0.3 45 152-196 4-52 (52)
111 2ehe_A Four and A half LIM dom 45.6 9.8 0.00034 26.2 1.9 41 150-201 15-55 (82)
112 2co8_A NEDD9 interacting prote 44.7 8.5 0.00029 26.9 1.4 43 148-202 13-55 (82)
113 2cup_A Skeletal muscle LIM-pro 43.5 8.7 0.0003 27.5 1.4 44 151-200 34-77 (101)
114 2i13_A AART; DNA binding, zinc 43.5 6.5 0.00022 30.7 0.7 18 188-205 160-177 (190)
115 1x4k_A Skeletal muscle LIM-pro 43.5 10 0.00035 25.4 1.6 40 151-201 6-45 (72)
116 2dj7_A Actin-binding LIM prote 43.2 12 0.0004 26.2 2.0 41 149-201 14-54 (80)
117 1x68_A FHL5 protein; four-and- 43.0 11 0.00039 25.6 1.9 41 150-201 5-47 (76)
118 4ayb_P DNA-directed RNA polyme 42.7 12 0.00041 24.8 1.8 20 67-86 5-31 (48)
119 1x6a_A LIMK-2, LIM domain kina 42.7 11 0.00036 26.0 1.7 38 151-201 16-53 (81)
120 3j20_Y 30S ribosomal protein S 42.2 11 0.00038 24.8 1.6 9 78-86 19-27 (50)
121 2ku3_A Bromodomain-containing 41.0 7.1 0.00024 27.5 0.5 51 146-197 12-65 (71)
122 1znf_A 31ST zinc finger from X 39.5 17 0.00059 18.2 1.9 15 190-204 2-16 (27)
123 3o70_A PHD finger protein 13; 39.5 3.3 0.00011 28.9 -1.5 49 148-198 17-67 (68)
124 2ayj_A 50S ribosomal protein L 38.8 21 0.00072 24.4 2.6 26 62-87 16-42 (56)
125 3u5n_A E3 ubiquitin-protein li 38.8 11 0.00037 31.3 1.4 46 147-199 4-55 (207)
126 3f6q_B LIM and senescent cell 38.6 12 0.00041 24.7 1.4 44 148-202 9-52 (72)
127 1qxf_A GR2, 30S ribosomal prot 38.2 12 0.00041 26.4 1.3 35 65-99 7-47 (66)
128 1x3h_A Leupaxin; paxillin fami 37.9 16 0.00053 25.0 1.9 39 150-201 15-53 (80)
129 2k4x_A 30S ribosomal protein S 37.8 21 0.00071 23.9 2.4 8 79-86 19-26 (55)
130 3v43_A Histone acetyltransfera 37.7 23 0.00079 26.5 3.0 26 171-196 31-62 (112)
131 2kwj_A Zinc finger protein DPF 37.7 9.5 0.00032 28.9 0.8 33 151-183 2-40 (114)
132 2cor_A Pinch protein; LIM doma 37.1 16 0.00055 25.2 1.9 41 149-202 14-54 (79)
133 1klr_A Zinc finger Y-chromosom 36.6 18 0.00063 18.4 1.7 17 189-205 2-18 (30)
134 2d8x_A Protein pinch; LIM doma 36.4 16 0.00054 24.3 1.7 40 150-202 5-44 (70)
135 2fiy_A Protein FDHE homolog; F 36.4 26 0.00088 31.3 3.5 24 64-87 207-231 (309)
136 2dar_A PDZ and LIM domain prot 36.2 15 0.00053 25.8 1.7 42 147-201 22-63 (90)
137 3lpe_B DNA-directed RNA polyme 36.1 14 0.00049 25.3 1.4 19 67-86 3-21 (59)
138 3shb_A E3 ubiquitin-protein li 36.1 48 0.0016 23.5 4.3 21 115-135 31-52 (77)
139 2cur_A Skeletal muscle LIM-pro 35.9 19 0.00064 23.9 2.0 38 150-200 5-42 (69)
140 2m0e_A Zinc finger and BTB dom 35.3 21 0.00071 18.0 1.8 16 189-204 2-17 (29)
141 1ard_A Yeast transcription fac 35.3 22 0.00075 18.0 1.9 16 189-204 2-17 (29)
142 2kdx_A HYPA, hydrogenase/ureas 35.2 11 0.00038 28.6 0.8 10 65-74 73-82 (119)
143 1vq8_Z 50S ribosomal protein L 35.0 14 0.00049 26.9 1.4 33 77-120 26-58 (83)
144 1ryq_A DNA-directed RNA polyme 34.8 20 0.00068 25.5 2.0 24 63-87 9-32 (69)
145 2kvf_A Zinc finger and BTB dom 34.3 16 0.00055 18.7 1.2 16 189-204 3-18 (28)
146 1p7a_A BF3, BKLF, kruppel-like 33.5 24 0.00081 19.4 1.9 17 188-204 10-26 (37)
147 3u5c_b RP61, YS20, 40S ribosom 33.3 26 0.00088 25.7 2.5 35 64-98 33-73 (82)
148 2l3k_A Rhombotin-2, linker, LI 32.8 16 0.00054 27.5 1.3 13 173-185 57-69 (123)
149 3j20_W 30S ribosomal protein S 32.8 17 0.00059 25.4 1.4 35 64-98 14-54 (63)
150 1x5w_A Zinc finger protein 64, 32.6 18 0.00062 23.3 1.5 32 188-219 36-67 (70)
151 3i2d_A E3 SUMO-protein ligase 32.1 26 0.00088 32.3 2.8 48 150-200 249-299 (371)
152 3gox_A Restriction endonucleas 31.7 55 0.0019 27.7 4.6 73 117-200 68-148 (200)
153 2elr_A Zinc finger protein 406 31.5 26 0.00089 19.0 1.9 18 188-205 8-25 (36)
154 2kvg_A Zinc finger and BTB dom 31.1 16 0.00056 18.8 0.9 16 189-204 3-18 (27)
155 2yql_A PHD finger protein 21A; 31.0 4.5 0.00015 26.8 -1.8 45 148-196 7-54 (56)
156 4fo9_A E3 SUMO-protein ligase 31.0 27 0.00092 32.0 2.8 47 151-200 216-265 (360)
157 1v6g_A Actin binding LIM prote 30.8 23 0.00079 24.2 1.9 39 150-201 15-53 (81)
158 1nyp_A Pinch protein; LIM doma 30.7 11 0.00038 24.8 0.1 39 150-201 5-43 (66)
159 2kvh_A Zinc finger and BTB dom 30.7 19 0.00066 18.3 1.1 16 189-204 3-18 (27)
160 2cuq_A Four and A half LIM dom 30.3 29 0.001 23.5 2.3 38 150-200 15-52 (80)
161 1rim_A E6APC2 peptide; E6-bind 30.2 28 0.00096 19.0 1.9 18 189-206 2-19 (33)
162 1paa_A Yeast transcription fac 30.1 26 0.00089 18.0 1.6 16 189-204 2-17 (30)
163 1qyp_A RNA polymerase II; tran 29.8 33 0.0011 22.6 2.4 35 79-114 16-50 (57)
164 1vd4_A Transcription initiatio 29.5 29 0.001 22.1 2.1 11 123-133 38-48 (62)
165 3u5c_f 40S ribosomal protein S 29.4 26 0.0009 27.9 2.2 21 78-98 118-146 (152)
166 2m0f_A Zinc finger and BTB dom 28.9 22 0.00075 17.9 1.2 16 189-204 2-17 (29)
167 2vpb_A Hpygo1, pygopus homolog 28.9 23 0.00077 24.4 1.5 34 149-182 7-41 (65)
168 6rxn_A Rubredoxin; electron tr 28.7 28 0.00096 22.6 1.8 13 88-100 2-15 (46)
169 1rik_A E6APC1 peptide; E6-bind 28.6 21 0.00072 18.2 1.1 16 189-204 2-17 (29)
170 2m0d_A Zinc finger and BTB dom 28.6 23 0.00079 17.9 1.2 16 189-204 3-18 (30)
171 2ytb_A Zinc finger protein 32; 28.2 30 0.001 19.5 1.8 19 188-206 10-28 (42)
172 3a7q_B Low-density lipoprotein 28.0 45 0.0015 20.8 2.7 31 123-154 11-43 (44)
173 1ajj_A LR5, low-density lipopr 27.8 33 0.0011 20.6 2.0 31 123-154 5-37 (37)
174 1twf_L ABC10-alpha, DNA-direct 27.7 28 0.00096 24.5 1.8 7 109-115 47-53 (70)
175 3iz6_X 40S ribosomal protein S 27.7 31 0.0011 25.5 2.1 35 65-99 36-76 (86)
176 2iyb_E Testin, TESS, TES; LIM 27.7 17 0.00059 24.0 0.7 39 152-201 4-44 (65)
177 1x4s_A Protein FON, zinc finge 27.5 20 0.0007 24.6 1.0 23 65-87 11-35 (59)
178 1wew_A DNA-binding family prot 27.5 7.9 0.00027 27.4 -1.2 50 149-200 15-74 (78)
179 2xzm_6 RPS27E; ribosome, trans 27.1 24 0.00083 25.8 1.4 36 64-99 31-72 (81)
180 2v3b_B Rubredoxin 2, rubredoxi 27.1 34 0.0012 22.9 2.1 14 88-101 1-15 (55)
181 2lv9_A Histone-lysine N-methyl 26.8 51 0.0017 24.2 3.2 49 152-202 30-80 (98)
182 2puy_A PHD finger protein 21A; 26.4 68 0.0023 21.1 3.6 23 111-135 6-28 (60)
183 2lvu_A Zinc finger and BTB dom 32.3 14 0.00048 18.7 0.0 15 189-203 2-16 (26)
184 2yt5_A Metal-response element- 26.2 38 0.0013 22.6 2.2 10 150-159 52-61 (66)
185 3o36_A Transcription intermedi 25.9 25 0.00085 28.4 1.5 47 149-199 3-52 (184)
186 2elx_A Zinc finger protein 406 25.9 27 0.00091 18.7 1.2 17 188-204 6-22 (35)
187 3asl_A E3 ubiquitin-protein li 25.8 94 0.0032 21.3 4.3 25 112-136 20-45 (70)
188 1wig_A KIAA1808 protein; LIM d 25.6 32 0.0011 23.2 1.8 37 151-200 6-42 (73)
189 3o7a_A PHD finger protein 13 v 25.2 5.3 0.00018 26.1 -2.3 29 170-198 22-52 (52)
190 2lvt_A Zinc finger and BTB dom 31.0 15 0.00052 18.9 0.0 16 189-204 2-17 (29)
191 1v5n_A PDI-like hypothetical p 25.1 34 0.0012 24.8 1.9 10 123-132 60-69 (89)
192 2emz_A ZFP-95, zinc finger pro 24.8 66 0.0023 18.6 3.0 19 188-206 11-29 (46)
193 2els_A Zinc finger protein 406 24.8 29 0.00099 18.9 1.2 17 188-204 8-24 (36)
194 2yte_A Zinc finger protein 473 24.5 40 0.0014 19.0 1.9 18 188-205 9-26 (42)
195 1m3v_A FLIN4, fusion of the LI 24.4 54 0.0018 24.4 3.0 48 152-201 34-81 (122)
196 2elv_A Zinc finger protein 406 24.3 29 0.001 18.9 1.2 17 188-204 8-24 (36)
197 1x62_A C-terminal LIM domain p 24.3 41 0.0014 22.9 2.2 40 149-201 14-53 (79)
198 2eos_A B-cell lymphoma 6 prote 24.0 40 0.0014 19.1 1.8 17 188-204 10-26 (42)
199 2lvr_A Zinc finger and BTB dom 29.4 17 0.00057 18.7 0.0 16 189-204 3-18 (30)
200 1ptq_A Protein kinase C delta 23.3 46 0.0016 20.8 2.1 11 104-114 25-35 (50)
201 2l43_A N-teminal domain from h 23.1 21 0.00072 25.9 0.5 50 148-199 23-76 (88)
202 2elt_A Zinc finger protein 406 23.1 31 0.0011 18.6 1.1 17 188-204 8-24 (36)
203 2elq_A Zinc finger protein 406 22.9 32 0.0011 18.7 1.1 17 188-204 8-24 (36)
204 1rwj_A Cytochrome C family pro 22.7 12 0.00043 26.8 -0.9 13 34-46 28-40 (82)
205 2ri7_A Nucleosome-remodeling f 22.6 11 0.00039 30.0 -1.2 49 150-199 8-60 (174)
206 2yqq_A Zinc finger HIT domain- 22.4 41 0.0014 22.8 1.8 16 81-97 15-30 (56)
207 4esj_A Type-2 restriction enzy 22.4 38 0.0013 29.7 2.0 8 79-86 35-42 (257)
208 2epx_A Zinc finger protein 28 22.2 47 0.0016 19.2 1.9 18 188-205 11-28 (47)
209 1x64_A Alpha-actinin-2 associa 22.2 46 0.0016 23.2 2.2 41 148-201 23-63 (89)
210 2en7_A Zinc finger protein 268 22.2 48 0.0016 18.8 1.9 18 188-205 11-28 (44)
211 2cs3_A Protein C14ORF4, MY039 22.1 62 0.0021 23.9 2.8 65 148-216 13-86 (93)
212 2eon_A ZFP-95, zinc finger pro 22.1 44 0.0015 19.4 1.8 18 188-205 11-28 (46)
213 1wfp_A Zinc finger (AN1-like) 22.0 51 0.0017 23.7 2.3 30 115-145 30-61 (74)
214 1srk_A Zinc finger protein ZFP 21.8 35 0.0012 18.3 1.2 17 188-204 6-22 (35)
215 2eoq_A Zinc finger protein 224 21.5 48 0.0016 19.1 1.9 19 188-206 11-29 (46)
216 2eq2_A Zinc finger protein 347 21.5 49 0.0017 19.1 1.9 18 188-205 11-28 (46)
217 1wem_A Death associated transc 21.3 11 0.00038 26.3 -1.4 47 150-198 16-70 (76)
218 2ytm_A Zinc finger protein 28 21.3 60 0.002 18.8 2.3 19 188-206 11-29 (46)
219 2emk_A Zinc finger protein 28 21.2 49 0.0017 19.2 1.9 20 188-207 11-30 (46)
220 2enf_A Zinc finger protein 347 21.1 50 0.0017 19.1 1.9 17 188-204 11-27 (46)
221 2ytr_A Zinc finger protein 347 21.0 51 0.0017 19.0 1.9 17 188-204 11-27 (46)
222 2elo_A Zinc finger protein 406 20.9 37 0.0013 18.5 1.2 17 188-204 8-24 (37)
223 2d8z_A Four and A half LIM dom 20.9 40 0.0014 22.2 1.5 38 151-201 6-43 (70)
224 2eov_A Zinc finger protein 484 20.8 51 0.0017 19.0 1.9 19 188-206 11-29 (46)
225 3p8b_A DNA-directed RNA polyme 20.8 40 0.0014 24.6 1.5 22 65-87 23-44 (81)
226 2eop_A Zinc finger protein 268 20.8 52 0.0018 18.9 1.9 18 188-205 11-28 (46)
227 2emg_A Zinc finger protein 484 20.6 52 0.0018 19.0 1.9 17 188-204 11-27 (46)
228 2eoh_A Zinc finger protein 28 20.6 52 0.0018 19.1 1.9 18 188-205 11-28 (46)
229 2em0_A Zinc finger protein 224 20.5 53 0.0018 18.9 1.9 18 188-205 11-28 (46)
230 2yti_A Zinc finger protein 347 20.4 52 0.0018 19.0 1.8 17 188-204 11-27 (46)
231 2fnf_X Putative RAS effector N 20.3 59 0.002 22.5 2.3 22 91-115 36-57 (72)
232 1njq_A Superman protein; zinc- 20.2 40 0.0014 18.8 1.2 18 188-205 5-22 (39)
No 1
>2dkt_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.89.1.1 g.93.1.1 PDB: 2k2c_A
Probab=100.00 E-value=4.9e-57 Score=370.13 Aligned_cols=139 Identities=42% Similarity=1.050 Sum_probs=131.9
Q ss_pred CCccccccCCCCccCCccccccceeecCCCCCcccCchhHHhhhcCCCCCCCcccccccccceeecCCCCccccccCcCC
Q 026787 3 GSANERITFGKMGYGCKHYRRRCRIRAPCCNEIFDCRHCHNEAASMLRNPYDRHELVRQDVKQVICSVCDTEQPVAQVCT 82 (233)
Q Consensus 3 ~~~~~~~~~~~~~~gC~HY~r~c~l~~pCC~~~y~Cr~CHde~~~~~~~~~~~H~~~r~~v~~v~C~~C~~~q~~~~~C~ 82 (233)
++....+|++++++||+||+|+|+|+||||++|||||+||||++ +|+++|+++++|+||.|+++|++++.|+
T Consensus 4 ~~~~~~~~~~~~~~gC~HY~r~~~lr~pCC~k~y~Cr~CHde~~--------dH~l~r~~~~~vlCg~C~~~q~~~~~C~ 75 (143)
T 2dkt_A 4 GSSGGVRNLAQGPRGCEHYDRACLLKAPCCDKLYTCRLCHDTNE--------DHQLDRFKVKEVQCINCEKLQHAQQTCE 75 (143)
T ss_dssp CCCCCCCCCCCCSSSCSSCCCSEEEEETTTTEEESSHHHHHHTS--------SSCCCSSSCCCEEESSSCCEECSCSBCS
T ss_pred CCCCcccccccCcCCCcccCCCeeEECCCCCCccchhhhhcccc--------ccccchhccceeeecccCccccccCcCC
Confidence 45566789999999999999999999999999999999999974 6999999999999999999999999999
Q ss_pred CCCCCcceeecCccccccCCCCcCeeccCCCCcceeCCccceeeccccCccccccccccceeecCCCCC
Q 026787 83 NCGVNMGEYFCDICKFYDDDIEKGQFHCDDCGICRIGGRENYFHCKRCGSCYSTSLRNNHLCIENSMHH 151 (233)
Q Consensus 83 ~Cg~~f~~Y~C~~C~l~d~~~~k~~yHC~~CgiCR~G~~~~~fHC~~C~~C~s~~l~~~H~C~e~~~~~ 151 (233)
+||+.||+|||+|||||| ++|+||||++|||||+|+++|||||++||+|||++|+++|+|+|+++++
T Consensus 76 ~Cg~~f~~Y~C~~C~l~d--~~k~~yHC~~CgiCR~G~~~~ffHC~~C~~C~s~~l~~~H~C~e~~~~s 142 (143)
T 2dkt_A 76 DCSTLFGEYYCSICHLFD--KDKRQYHCESCGICRIGPKEDFFHCLKCNLCLTTNLRGKHKCIESGPSS 142 (143)
T ss_dssp SSCCBSCSEECSSSCCEE--CSSSEEEETTTTEEEESCGGGEEEETTTTEEEEGGGSSSSCCSCCCSCC
T ss_pred CCCccceeeEeceeeccc--CCCceecCCCCCceeccCCcCcEECCcCCeeeccccCcCcccCccCccC
Confidence 999999999999999997 4699999999999999999999999999999999999999999999864
No 2
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=99.45 E-value=3.2e-14 Score=95.91 Aligned_cols=52 Identities=42% Similarity=0.875 Sum_probs=45.8
Q ss_pred CCCCCCcchhhhhcccCCceeEeccCCccChhhHHHHhccCCCcCCCCCcccc
Q 026787 148 SMHHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVI 200 (233)
Q Consensus 148 ~~~~~CpICle~lf~s~~~v~~LpCGH~~H~~C~~~~~~~~~~~CPiCrksi~ 200 (233)
+.+..||||++.+.++...+..++|||.||..|+.+|++. +.+||+||+.+.
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~ 54 (55)
T 2ecm_A 3 SGSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKE-GYRCPLCSGPSS 54 (55)
T ss_dssp SCCCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHH-TCCCTTSCCSSC
T ss_pred CCCCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHc-CCcCCCCCCcCC
Confidence 4567899999998777677899999999999999999985 589999998874
No 3
>2k2d_A Ring finger and CHY zinc finger domain- containing protein 1; zinc-binding protein, cytoplasm, metal-binding, nucleus, metal binding protein; NMR {Homo sapiens}
Probab=99.42 E-value=2.8e-14 Score=106.15 Aligned_cols=41 Identities=29% Similarity=0.573 Sum_probs=8.2
Q ss_pred CCCCCccccchhHHhhhhHHHHHhCCCChhhhcceeEEEEe
Q 026787 192 CPICSKSVIDMSRTWKRIDEEIEATVMPEDYRHKKVSSCLY 232 (233)
Q Consensus 192 CPiCrksi~dm~~~~~~lD~~i~~~pmP~~y~~~~~~i~~~ 232 (233)
||+|+||+.||+.+|++||++|+++|||++|++++|+|+|.
T Consensus 1 ~~~c~ks~~dm~~~~~~lD~~ia~~pmP~~y~~~~v~I~Cn 41 (79)
T 2k2d_A 1 GSHMMHSALDMTRYWRQLDDEVAQTPMPSEYQNMTVDILCN 41 (79)
T ss_dssp --------------------------------CCEEEEEES
T ss_pred CCcccccHHHHHHHHHHHHHHHHhCCCCHHHhCCEeEEECC
Confidence 79999999999999999999999999999999999999985
No 4
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=99.38 E-value=2.5e-13 Score=91.62 Aligned_cols=50 Identities=28% Similarity=0.721 Sum_probs=41.8
Q ss_pred CCCCCcchhhhhcccCCceeEec-cCCccChhhHHHHhccCCCcCCCCCcccc
Q 026787 149 MHHHCPICYEYLFDSLRNTTVMK-CGHTMHCECYHEMIKRDKYCCPICSKSVI 200 (233)
Q Consensus 149 ~~~~CpICle~lf~s~~~v~~Lp-CGH~~H~~C~~~~~~~~~~~CPiCrksi~ 200 (233)
.+..|+||++.+.++ +.+..|+ |||.||..|+.+|++. +.+||+||+.+.
T Consensus 4 ~~~~C~IC~~~~~~~-~~~~~~~~C~H~f~~~Ci~~w~~~-~~~CP~Cr~~~~ 54 (55)
T 1iym_A 4 DGVECAVCLAELEDG-EEARFLPRCGHGFHAECVDMWLGS-HSTCPLCRLTVV 54 (55)
T ss_dssp CSCCCTTTCCCCCTT-SCCEECSSSCCEECTTHHHHTTTT-CCSCSSSCCCSC
T ss_pred CCCcCccCCccccCC-CceEECCCCCCcccHHHHHHHHHc-CCcCcCCCCEeE
Confidence 356899999996554 5677787 9999999999999984 789999998763
No 5
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.36 E-value=2.7e-13 Score=96.88 Aligned_cols=56 Identities=23% Similarity=0.671 Sum_probs=47.0
Q ss_pred cCCCCCCCcchhhhhcccCCceeEeccCCccChhhHHHHhccCCCcCCCCCccccchh
Q 026787 146 ENSMHHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVIDMS 203 (233)
Q Consensus 146 e~~~~~~CpICle~lf~s~~~v~~LpCGH~~H~~C~~~~~~~~~~~CPiCrksi~dm~ 203 (233)
+...+..|+||++.+. ....+.+|+|||.||..|+.+|++. +.+||+||+.+.++.
T Consensus 11 ~~~~~~~C~IC~~~~~-~~~~~~~~~C~H~f~~~Ci~~~~~~-~~~CP~Cr~~~~~~~ 66 (74)
T 2ep4_A 11 ELNLHELCAVCLEDFK-PRDELGICPCKHAFHRKCLIKWLEV-RKVCPLCNMPVLQLA 66 (74)
T ss_dssp CCCCSCBCSSSCCBCC-SSSCEEEETTTEEEEHHHHHHHHHH-CSBCTTTCCBCSSCC
T ss_pred cCCCCCCCcCCCcccC-CCCcEEEcCCCCEecHHHHHHHHHc-CCcCCCcCccccccc
Confidence 4456778999999954 4467788999999999999999985 579999999998654
No 6
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.35 E-value=5.9e-13 Score=97.87 Aligned_cols=49 Identities=22% Similarity=0.539 Sum_probs=39.4
Q ss_pred CCCCcchhhhhcccCCceeEe-ccCCccChhhHHHHhccCCCcCCCCCcccc
Q 026787 150 HHHCPICYEYLFDSLRNTTVM-KCGHTMHCECYHEMIKRDKYCCPICSKSVI 200 (233)
Q Consensus 150 ~~~CpICle~lf~s~~~v~~L-pCGH~~H~~C~~~~~~~~~~~CPiCrksi~ 200 (233)
+..||||++++..+ +.+.+| +|||.||..|+.+|++. +.+||+||+.+.
T Consensus 26 ~~~C~iC~~~~~~~-~~~~~~~~C~H~FH~~Ci~~Wl~~-~~~CP~CR~~~~ 75 (81)
T 2ecl_A 26 MDACLRCQAENKQE-DCVVVWGECNHSFHNCCMSLWVKQ-NNRCPLCQQDWV 75 (81)
T ss_dssp TSCCTTHHHHTCTT-TCCEEEETTSCEEEHHHHHHHTTT-CCBCTTTCCBCC
T ss_pred hccCcccccccCCC-ceEEEeCCCCCccChHHHHHHHHh-CCCCCCcCCCcc
Confidence 55788888886554 445555 59999999999999984 679999999875
No 7
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=99.34 E-value=4.8e-13 Score=94.34 Aligned_cols=54 Identities=24% Similarity=0.544 Sum_probs=44.8
Q ss_pred cCCCCCCCcchhhhhcccCCceeEeccCCccChhhHHHHhccCCCcCCCCCccccc
Q 026787 146 ENSMHHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVID 201 (233)
Q Consensus 146 e~~~~~~CpICle~lf~s~~~v~~LpCGH~~H~~C~~~~~~~~~~~CPiCrksi~d 201 (233)
+...+..|+||++.+. ....+..|+|||.||..|+.+|+.. +.+||+||+.+..
T Consensus 10 ~~~~~~~C~IC~~~~~-~~~~~~~~~C~H~fc~~Ci~~~~~~-~~~CP~Cr~~~~~ 63 (69)
T 2kiz_A 10 EEDTEEKCTICLSILE-EGEDVRRLPCMHLFHQVCVDQWLIT-NKKCPICRVDIEA 63 (69)
T ss_dssp STTCCCSBTTTTBCCC-SSSCEEECTTSCEEEHHHHHHHHHH-CSBCTTTCSBSCS
T ss_pred cCCCCCCCeeCCcccc-CCCcEEEeCCCCHHHHHHHHHHHHc-CCCCcCcCccccC
Confidence 3455678999999854 4467888999999999999999985 6789999998753
No 8
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.34 E-value=2.5e-13 Score=97.58 Aligned_cols=52 Identities=27% Similarity=0.568 Sum_probs=44.2
Q ss_pred CCCCCCcchhhhhcccCCceeEeccCCccChhhHHHHhccCCCcCCCCCccccc
Q 026787 148 SMHHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVID 201 (233)
Q Consensus 148 ~~~~~CpICle~lf~s~~~v~~LpCGH~~H~~C~~~~~~~~~~~CPiCrksi~d 201 (233)
..+..|+||++.+. ..+.+..|||||.||..|+.+|++. +.+||+||+.+..
T Consensus 21 ~~~~~C~IC~~~~~-~~~~~~~l~C~H~fh~~Ci~~w~~~-~~~CP~Cr~~~~~ 72 (75)
T 1x4j_A 21 SEQTLCVVCMCDFE-SRQLLRVLPCNHEFHAKCVDKWLKA-NRTCPICRADSGP 72 (75)
T ss_dssp SSCCEETTTTEECC-BTCEEEEETTTEEEETTHHHHHHHH-CSSCTTTCCCCCC
T ss_pred CCCCCCeECCcccC-CCCeEEEECCCCHhHHHHHHHHHHc-CCcCcCcCCcCCC
Confidence 45678999999954 4467889999999999999999985 6899999998864
No 9
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=99.31 E-value=1e-12 Score=101.16 Aligned_cols=56 Identities=25% Similarity=0.434 Sum_probs=43.7
Q ss_pred CCCCCCCcchhhhhcccC--------------CceeEeccCCccChhhHHHHhc----cCCCcCCCCCccccch
Q 026787 147 NSMHHHCPICYEYLFDSL--------------RNTTVMKCGHTMHCECYHEMIK----RDKYCCPICSKSVIDM 202 (233)
Q Consensus 147 ~~~~~~CpICle~lf~s~--------------~~v~~LpCGH~~H~~C~~~~~~----~~~~~CPiCrksi~dm 202 (233)
...+.+||||+++|.+.. ..++.++|||.||..||.+|+. ..+.+||+||+.+...
T Consensus 22 ~~~~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~~ 95 (114)
T 1v87_A 22 VAPEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGEK 95 (114)
T ss_dssp SCCSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSSC
T ss_pred CCCCCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCCCCCcCCCCCCccCCC
Confidence 345678999999975432 2345789999999999999994 2467999999988743
No 10
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=99.29 E-value=1.1e-12 Score=98.16 Aligned_cols=51 Identities=24% Similarity=0.511 Sum_probs=43.3
Q ss_pred CCCCCCcchhhhhcccCCceeEeccCCccChhhHHHHhccCCCcCCCCCcccc
Q 026787 148 SMHHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVI 200 (233)
Q Consensus 148 ~~~~~CpICle~lf~s~~~v~~LpCGH~~H~~C~~~~~~~~~~~CPiCrksi~ 200 (233)
..+..|+||++.+.. .+.+..|||||.||..|+.+|++ .+.+||+||+.+.
T Consensus 38 ~~~~~C~IC~~~~~~-~~~~~~l~C~H~Fh~~Ci~~wl~-~~~~CP~Cr~~~~ 88 (91)
T 2l0b_A 38 GQEMCCPICCSEYVK-GDVATELPCHHYFHKPCVSIWLQ-KSGTCPVCRCMFP 88 (91)
T ss_dssp SSCSEETTTTEECCT-TCEEEEETTTEEEEHHHHHHHHT-TTCBCTTTCCBSS
T ss_pred CCCCCCcccChhhcC-CCcEEecCCCChHHHHHHHHHHH-cCCcCcCcCccCC
Confidence 345679999999654 46788899999999999999998 4789999999875
No 11
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.28 E-value=1.4e-12 Score=93.96 Aligned_cols=52 Identities=25% Similarity=0.597 Sum_probs=43.9
Q ss_pred CCCCCCcchhhhhcccCCceeEeccCCccChhhHHHHhccCCCcCCCCCccccc
Q 026787 148 SMHHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVID 201 (233)
Q Consensus 148 ~~~~~CpICle~lf~s~~~v~~LpCGH~~H~~C~~~~~~~~~~~CPiCrksi~d 201 (233)
..+..|+||++.+. ....+.+|+|||.||..|+.+|++ .+.+||+||+.+..
T Consensus 13 ~~~~~C~IC~~~~~-~~~~~~~~~C~H~fc~~Ci~~~~~-~~~~CP~Cr~~~~~ 64 (78)
T 2ect_A 13 GSGLECPVCKEDYA-LGESVRQLPCNHLFHDSCIVPWLE-QHDSCPVCRKSLTG 64 (78)
T ss_dssp SSSCCCTTTTSCCC-TTSCEEECTTSCEEETTTTHHHHT-TTCSCTTTCCCCCC
T ss_pred CCCCCCeeCCcccc-CCCCEEEeCCCCeecHHHHHHHHH-cCCcCcCcCCccCC
Confidence 34568999999854 445778899999999999999998 46899999999864
No 12
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=99.25 E-value=1.8e-12 Score=91.33 Aligned_cols=53 Identities=28% Similarity=0.636 Sum_probs=43.8
Q ss_pred CCCCCCcchhhhhccc---CCceeEeccCCccChhhHHHHhccCCCcCCCCCccccc
Q 026787 148 SMHHHCPICYEYLFDS---LRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVID 201 (233)
Q Consensus 148 ~~~~~CpICle~lf~s---~~~v~~LpCGH~~H~~C~~~~~~~~~~~CPiCrksi~d 201 (233)
..+..||||++.+.+. .+.+..++|||.||..|+.+|++. +.+||+||+.+..
T Consensus 8 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~ 63 (71)
T 3ng2_A 8 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-ANTCPTCRKKINH 63 (71)
T ss_dssp TTCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHH-CSBCTTTCCBCCC
T ss_pred CCCCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHc-CCCCCCCCCccCh
Confidence 4567899999997653 244578999999999999999985 6899999998863
No 13
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.24 E-value=2.3e-12 Score=90.03 Aligned_cols=52 Identities=29% Similarity=0.646 Sum_probs=42.8
Q ss_pred CCCCCCcchhhhhccc---CCceeEeccCCccChhhHHHHhccCCCcCCCCCcccc
Q 026787 148 SMHHHCPICYEYLFDS---LRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVI 200 (233)
Q Consensus 148 ~~~~~CpICle~lf~s---~~~v~~LpCGH~~H~~C~~~~~~~~~~~CPiCrksi~ 200 (233)
.....||||++.+.+. ...+..++|||.||..|+.+|+.. +.+||+||+.+.
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~ 67 (69)
T 2ea6_A 13 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-ANTCPTCRKKIN 67 (69)
T ss_dssp TCCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHH-CSSCTTTCCCCC
T ss_pred CCCCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHc-CCCCCCCCCccC
Confidence 3456899999997653 234578999999999999999985 689999998874
No 14
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=99.23 E-value=3.1e-12 Score=88.10 Aligned_cols=52 Identities=27% Similarity=0.646 Sum_probs=43.1
Q ss_pred CCCCCcchhhhhccc---CCceeEeccCCccChhhHHHHhccCCCcCCCCCccccc
Q 026787 149 MHHHCPICYEYLFDS---LRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVID 201 (233)
Q Consensus 149 ~~~~CpICle~lf~s---~~~v~~LpCGH~~H~~C~~~~~~~~~~~CPiCrksi~d 201 (233)
.+..||||++.+.+. .+.+..++|||.||..|+.+|++. +.+||+||+.+..
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~ 56 (64)
T 2xeu_A 2 AMVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-ANTCPTCRKKINH 56 (64)
T ss_dssp CCCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHH-CSBCTTTCCBCTT
T ss_pred CCCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHc-CCCCCCCCccCCc
Confidence 356899999997652 244578999999999999999985 7899999998863
No 15
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=99.23 E-value=6.2e-12 Score=87.86 Aligned_cols=51 Identities=25% Similarity=0.522 Sum_probs=42.0
Q ss_pred CCCCcchhh-hhcccCCceeEeccCCccChhhHHHHhccCCCcCCCCCcccc
Q 026787 150 HHHCPICYE-YLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVI 200 (233)
Q Consensus 150 ~~~CpICle-~lf~s~~~v~~LpCGH~~H~~C~~~~~~~~~~~CPiCrksi~ 200 (233)
+..||||++ .+.+....+..++|||+|+..|+.+|+..+..+||+||+.+.
T Consensus 3 ~~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 54 (65)
T 1g25_A 3 DQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLR 54 (65)
T ss_dssp TTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTSSSCTTTCCCCS
T ss_pred CCcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHcCCCcCCCCCCccc
Confidence 467999999 665554444678999999999999997656789999999986
No 16
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=99.21 E-value=2e-12 Score=95.27 Aligned_cols=61 Identities=23% Similarity=0.539 Sum_probs=48.9
Q ss_pred CCCCCcchhhhhcccCCceeEec--cCCccChhhHHHHhccCCCcCCCCCccccchhHHhhhhHH
Q 026787 149 MHHHCPICYEYLFDSLRNTTVMK--CGHTMHCECYHEMIKRDKYCCPICSKSVIDMSRTWKRIDE 211 (233)
Q Consensus 149 ~~~~CpICle~lf~s~~~v~~Lp--CGH~~H~~C~~~~~~~~~~~CPiCrksi~dm~~~~~~lD~ 211 (233)
.+..||||+|.+.. .++.++| |||.|+..|+..++....++||+||+++......|+++|+
T Consensus 10 ~~~~CpICle~~~~--~d~~~~p~~CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~~~~~~~~~~~~ 72 (78)
T 1e4u_A 10 DPVECPLCMEPLEI--DDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPEDPAVYKPLSQ 72 (78)
T ss_dssp CCCBCTTTCCBCCT--TTTTCCSSTTSCCCCHHHHHHHTTSSCSBCTTTCCBCSSCSSCCCSCCC
T ss_pred cCCcCCccCccCcc--ccccccccCCCCCcCHHHHHHHHhcCCCCCCCCCCccCCCchhhccCCH
Confidence 45689999998632 3445555 9999999999999866678999999999988777876654
No 17
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=99.17 E-value=7.9e-12 Score=87.62 Aligned_cols=50 Identities=26% Similarity=0.641 Sum_probs=42.5
Q ss_pred CCCCCcchhhhhcccCCceeEeccCCccChhhHHHHhccCCCcCCCCCccccch
Q 026787 149 MHHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVIDM 202 (233)
Q Consensus 149 ~~~~CpICle~lf~s~~~v~~LpCGH~~H~~C~~~~~~~~~~~CPiCrksi~dm 202 (233)
.+..||||++.+. +++..++|||.||..|+.+|++. +.+||+||+.+..+
T Consensus 4 ~~~~C~IC~~~~~---~~~~~~~C~H~fc~~Ci~~~~~~-~~~CP~Cr~~~~~~ 53 (68)
T 1chc_A 4 VAERCPICLEDPS---NYSMALPCLHAFCYVCITRWIRQ-NPTCPLCKVPVESV 53 (68)
T ss_dssp CCCCCSSCCSCCC---SCEEETTTTEEESTTHHHHHHHH-SCSTTTTCCCCCCE
T ss_pred CCCCCeeCCcccc---CCcEecCCCCeeHHHHHHHHHhC-cCcCcCCChhhHhh
Confidence 4568999999853 35688999999999999999984 68999999998754
No 18
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.17 E-value=1.4e-12 Score=92.24 Aligned_cols=53 Identities=21% Similarity=0.530 Sum_probs=44.2
Q ss_pred CCCCCCcchhhhhcccCCceeEeccCCccChhhHHHHhccCCCcCCCCCccccchhHHh
Q 026787 148 SMHHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVIDMSRTW 206 (233)
Q Consensus 148 ~~~~~CpICle~lf~s~~~v~~LpCGH~~H~~C~~~~~~~~~~~CPiCrksi~dm~~~~ 206 (233)
.....||||++.+.+ ..|+|||.||..|+.+|+. .+.+||+||+.+......|
T Consensus 13 ~~~~~C~IC~~~~~~-----~~~~CgH~fc~~Ci~~~~~-~~~~CP~Cr~~~~~~~~~~ 65 (70)
T 2ecn_A 13 TDEEECCICMDGRAD-----LILPCAHSFCQKCIDKWSD-RHRNCPICRLQMTGANESS 65 (70)
T ss_dssp CCCCCCSSSCCSCCS-----EEETTTEEECHHHHHHSSC-CCSSCHHHHHCTTCCCCCC
T ss_pred CCCCCCeeCCcCccC-----cccCCCCcccHHHHHHHHH-CcCcCCCcCCcccCCCccc
Confidence 345789999998532 7899999999999999998 5799999999988665544
No 19
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.16 E-value=1.6e-11 Score=89.66 Aligned_cols=52 Identities=29% Similarity=0.702 Sum_probs=43.4
Q ss_pred CCCCCcchhhhhcccCCceeEeccCCccChhhHHHHhccC--CCcCCCCCcccc
Q 026787 149 MHHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRD--KYCCPICSKSVI 200 (233)
Q Consensus 149 ~~~~CpICle~lf~s~~~v~~LpCGH~~H~~C~~~~~~~~--~~~CPiCrksi~ 200 (233)
....||||++.+.++....+.|+|||.||..|+.+|+... ..+||+||+.+.
T Consensus 14 ~~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~ 67 (88)
T 2ct2_A 14 EVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSKITR 67 (88)
T ss_dssp SCCBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHCSSCBCCTTTCCCBC
T ss_pred CCCCCccCCccccccCCCeEECCCCChhhHHHHHHHHHcCCCCcCCCCCCCccc
Confidence 3568999999976654447789999999999999999853 489999999875
No 20
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=99.14 E-value=2.3e-11 Score=94.48 Aligned_cols=49 Identities=18% Similarity=0.411 Sum_probs=36.4
Q ss_pred CCCCcchhhhhccc---CCceeEeccCCccChhhHHHHhccCCCcCCCCCccc
Q 026787 150 HHHCPICYEYLFDS---LRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSV 199 (233)
Q Consensus 150 ~~~CpICle~lf~s---~~~v~~LpCGH~~H~~C~~~~~~~~~~~CPiCrksi 199 (233)
+..|+||++++.++ ...+..|+|||.||..|+.+||.. +.+||+||+.+
T Consensus 48 ~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~-~~~CP~Cr~~~ 99 (106)
T 3dpl_R 48 MDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT-RQVCPLDNREW 99 (106)
T ss_dssp TSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTT-CSBCSSSCSBC
T ss_pred hCcCchhhccccccCCccceEeecccCcEECHHHHHHHHHc-CCcCcCCCCcc
Confidence 34566666543221 124677899999999999999984 78999999885
No 21
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.12 E-value=2.5e-11 Score=86.31 Aligned_cols=49 Identities=16% Similarity=0.434 Sum_probs=40.9
Q ss_pred CCCCCCcchhhhhcccCCceeEeccCCccChhhHHHHhccCCCcCCCCCccccc
Q 026787 148 SMHHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVID 201 (233)
Q Consensus 148 ~~~~~CpICle~lf~s~~~v~~LpCGH~~H~~C~~~~~~~~~~~CPiCrksi~d 201 (233)
..+..||||++.+. ..+.|+|||.||..|+.+|+.. +.+||+||+.+..
T Consensus 13 ~~~~~C~IC~~~~~----~~~~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~~ 61 (71)
T 2d8t_A 13 LTVPECAICLQTCV----HPVSLPCKHVFCYLCVKGASWL-GKRCALCRQEIPE 61 (71)
T ss_dssp SSCCBCSSSSSBCS----SEEEETTTEEEEHHHHHHCTTC-SSBCSSSCCBCCH
T ss_pred CCCCCCccCCcccC----CCEEccCCCHHHHHHHHHHHHC-CCcCcCcCchhCH
Confidence 34568999999863 3467899999999999999984 6899999998863
No 22
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.07 E-value=4.3e-11 Score=86.98 Aligned_cols=48 Identities=25% Similarity=0.501 Sum_probs=40.2
Q ss_pred CCCCCcchhhhhcccCCceeEeccCCccChhhHHHHhccCCCcCCCCCccccc
Q 026787 149 MHHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVID 201 (233)
Q Consensus 149 ~~~~CpICle~lf~s~~~v~~LpCGH~~H~~C~~~~~~~~~~~CPiCrksi~d 201 (233)
....||||++.+.+ .++++|||+||..|+.+|+.. ..+||+||+.+..
T Consensus 14 ~~~~C~IC~~~~~~----p~~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~~ 61 (81)
T 2csy_A 14 IPFRCFICRQAFQN----PVVTKCRHYFCESCALEHFRA-TPRCYICDQPTGG 61 (81)
T ss_dssp CCSBCSSSCSBCCS----EEECTTSCEEEHHHHHHHHHH-CSBCSSSCCBCCS
T ss_pred CCCCCcCCCchhcC----eeEccCCCHhHHHHHHHHHHC-CCcCCCcCccccc
Confidence 35579999998632 346899999999999999984 7899999999863
No 23
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=99.07 E-value=7.4e-11 Score=94.29 Aligned_cols=68 Identities=25% Similarity=0.618 Sum_probs=48.5
Q ss_pred CCCcchhhhhcccCCceeEeccCCccChhhHHHHhccCCCcCCCCCccccchhH---HhhhhHHHHHhCCCChhhhcc
Q 026787 151 HHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVIDMSR---TWKRIDEEIEATVMPEDYRHK 225 (233)
Q Consensus 151 ~~CpICle~lf~s~~~v~~LpCGH~~H~~C~~~~~~~~~~~CPiCrksi~dm~~---~~~~lD~~i~~~pmP~~y~~~ 225 (233)
..||||++.+. ..+.|||||+||..|+.+|+. .+.+||+||+.+..... ....++.+++ .++++++.+
T Consensus 54 ~~C~iC~~~~~----~~~~~~CgH~fc~~Ci~~~~~-~~~~CP~Cr~~~~~~~~~~~~~~~i~~~~~--~l~~~~~~r 124 (138)
T 4ayc_A 54 LQCIICSEYFI----EAVTLNCAHSFCSYCINEWMK-RKIECPICRKDIKSKTYSLVLDNCINKMVN--NLSSEVKER 124 (138)
T ss_dssp SBCTTTCSBCS----SEEEETTSCEEEHHHHHHHTT-TCSBCTTTCCBCCCEEECHHHHHHHHHHHT--TSCHHHHHH
T ss_pred CCCcccCcccC----CceECCCCCCccHHHHHHHHH-cCCcCCCCCCcCCCCCCccchhHHHHHHHH--HhhHHHHHH
Confidence 46999999864 345789999999999999998 47899999999864321 1223334333 356666544
No 24
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=99.07 E-value=7.5e-11 Score=84.82 Aligned_cols=49 Identities=18% Similarity=0.455 Sum_probs=40.9
Q ss_pred CCCCCCcchhhhhcccCCceeEeccCCccChhhHHHHhccCCCcCCCCCcccc
Q 026787 148 SMHHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVI 200 (233)
Q Consensus 148 ~~~~~CpICle~lf~s~~~v~~LpCGH~~H~~C~~~~~~~~~~~CPiCrksi~ 200 (233)
..+..||||++.|.+ .+.++|||+|++.|+.+|+..++.+||+||+.+.
T Consensus 6 ~~~~~C~IC~~~~~~----Pv~~~CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~ 54 (78)
T 1t1h_A 6 PEYFRCPISLELMKD----PVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLL 54 (78)
T ss_dssp SSSSSCTTTSCCCSS----EEEETTTEEEEHHHHHHHHTTTCCBCTTTCCBCS
T ss_pred cccCCCCCccccccC----CEEcCCCCeecHHHHHHHHHHCcCCCCCCcCCCC
Confidence 346689999997632 3457999999999999999865789999999985
No 25
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=99.06 E-value=5.5e-11 Score=92.23 Aligned_cols=53 Identities=28% Similarity=0.636 Sum_probs=43.8
Q ss_pred CCCCCCcchhhhhccc---CCceeEeccCCccChhhHHHHhccCCCcCCCCCccccc
Q 026787 148 SMHHHCPICYEYLFDS---LRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVID 201 (233)
Q Consensus 148 ~~~~~CpICle~lf~s---~~~v~~LpCGH~~H~~C~~~~~~~~~~~CPiCrksi~d 201 (233)
+.+..||||++.+.+. .+.++.++|||+||..|+.+|++. +.+||+||+.+..
T Consensus 5 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~ 60 (133)
T 4ap4_A 5 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-ANTCPTCRKKINH 60 (133)
T ss_dssp CCSCBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHTT-CSBCTTTCCBCTT
T ss_pred CCCCCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHHh-CCCCCCCCCcCcc
Confidence 3456899999997543 345588999999999999999984 6799999999863
No 26
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.05 E-value=6e-11 Score=84.50 Aligned_cols=49 Identities=33% Similarity=0.578 Sum_probs=40.5
Q ss_pred CCCCCcchhhhhcccCCceeEeccCCccChhhHHHHhccCCCcCCCCCccccc
Q 026787 149 MHHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVID 201 (233)
Q Consensus 149 ~~~~CpICle~lf~s~~~v~~LpCGH~~H~~C~~~~~~~~~~~CPiCrksi~d 201 (233)
.+..||||++.+.+ ++..++|||.||..|+.+|+.. +.+||+||+.+..
T Consensus 14 ~~~~C~IC~~~~~~---p~~~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~~ 62 (72)
T 2djb_A 14 PYILCSICKGYLID---ATTITECLHTFCKSCIVRHFYY-SNRCPKCNIVVHQ 62 (72)
T ss_dssp GGGSCTTTSSCCSS---CEECSSSCCEECHHHHHHHHHH-CSSCTTTCCCCCS
T ss_pred CCCCCCCCChHHHC---cCEECCCCCHHHHHHHHHHHHc-CCcCCCcCcccCc
Confidence 35689999998643 4555599999999999999974 6899999998863
No 27
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.05 E-value=9.8e-11 Score=82.91 Aligned_cols=49 Identities=29% Similarity=0.735 Sum_probs=40.0
Q ss_pred CCCCCCcchhhhhcccCCceeEeccCCccChhhHHHHhcc--CCCcCCCCCcccc
Q 026787 148 SMHHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKR--DKYCCPICSKSVI 200 (233)
Q Consensus 148 ~~~~~CpICle~lf~s~~~v~~LpCGH~~H~~C~~~~~~~--~~~~CPiCrksi~ 200 (233)
..+..||||++.+. ..+.|+|||.||..|+.+|++. ...+||+||+.+.
T Consensus 18 ~~~~~C~IC~~~~~----~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~ 68 (73)
T 2ysl_A 18 QEEVICPICLDILQ----KPVTIDCGHNFCLKCITQIGETSCGFFKCPLCKTSVR 68 (73)
T ss_dssp CCCCBCTTTCSBCS----SEEECTTCCEEEHHHHHHHCSSSCSCCCCSSSCCCCC
T ss_pred ccCCEeccCCcccC----CeEEcCCCChhhHHHHHHHHHcCCCCCCCCCCCCcCC
Confidence 34568999999854 3456799999999999999962 4679999999875
No 28
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.05 E-value=6.8e-11 Score=82.72 Aligned_cols=48 Identities=21% Similarity=0.556 Sum_probs=39.5
Q ss_pred CCCCcchhhhhcccCCceeEeccCCccChhhHHHHhccCCCcCCCCCccccc
Q 026787 150 HHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVID 201 (233)
Q Consensus 150 ~~~CpICle~lf~s~~~v~~LpCGH~~H~~C~~~~~~~~~~~CPiCrksi~d 201 (233)
+..||||++.+.+ ++ .++|||.||..|+.+|+...+.+||+||+.+..
T Consensus 15 ~~~C~IC~~~~~~---p~-~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 62 (66)
T 2ecy_A 15 KYKCEKCHLVLCS---PK-QTECGHRFCESCMAALLSSSSPKCTACQESIVK 62 (66)
T ss_dssp CEECTTTCCEESS---CC-CCSSSCCCCHHHHHHHHTTSSCCCTTTCCCCCT
T ss_pred CCCCCCCChHhcC---ee-ECCCCCHHHHHHHHHHHHhCcCCCCCCCcCCCh
Confidence 4579999998643 33 389999999999999996567899999998863
No 29
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=99.02 E-value=9.8e-11 Score=84.06 Aligned_cols=53 Identities=23% Similarity=0.558 Sum_probs=41.4
Q ss_pred CCCCcchhhhhcccCCceeEec-cCCccChhhHHHHhccC-CCcCCCCCccccchhHHh
Q 026787 150 HHHCPICYEYLFDSLRNTTVMK-CGHTMHCECYHEMIKRD-KYCCPICSKSVIDMSRTW 206 (233)
Q Consensus 150 ~~~CpICle~lf~s~~~v~~Lp-CGH~~H~~C~~~~~~~~-~~~CPiCrksi~dm~~~~ 206 (233)
+..||||++.+.+ .+.|+ |||+||..|+.+|+... ..+||+||+.+.....++
T Consensus 15 ~~~C~IC~~~~~~----p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~~~~~ 69 (74)
T 2yur_A 15 ELLCLICKDIMTD----AVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSPDALS 69 (74)
T ss_dssp GGSCSSSCCCCTT----CEECSSSCCEECTTHHHHHHHHSSSSCCSSSCCSSCCTTTTT
T ss_pred CCCCcCCChHHhC----CeEcCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCCCccccc
Confidence 4579999998643 34588 99999999999999742 379999999876554443
No 30
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=99.01 E-value=1.2e-10 Score=88.34 Aligned_cols=48 Identities=21% Similarity=0.483 Sum_probs=40.4
Q ss_pred CCCCcchhhhhcccCCceeEeccCCccChhhHHHHhccCCCcCCCCCcccc
Q 026787 150 HHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVI 200 (233)
Q Consensus 150 ~~~CpICle~lf~s~~~v~~LpCGH~~H~~C~~~~~~~~~~~CPiCrksi~ 200 (233)
+..||||++.+. +++..++|||.||..|+.+|+.....+||+||+++.
T Consensus 22 ~~~C~IC~~~~~---~p~~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~ 69 (100)
T 3lrq_A 22 VFRCFICMEKLR---DARLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQ 69 (100)
T ss_dssp HTBCTTTCSBCS---SEEECTTTCCEEEHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred CCCCccCCcccc---CccccCCCCChhhHHHHHHHHHHCcCCCCCCCCcCC
Confidence 457999999863 355559999999999999999864479999999985
No 31
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.00 E-value=1.3e-10 Score=85.93 Aligned_cols=52 Identities=27% Similarity=0.534 Sum_probs=41.0
Q ss_pred CCCCCCCcchhhhhcccCCceeEeccC-----CccChhhHHHHhccC-CCcCCCCCcccc
Q 026787 147 NSMHHHCPICYEYLFDSLRNTTVMKCG-----HTMHCECYHEMIKRD-KYCCPICSKSVI 200 (233)
Q Consensus 147 ~~~~~~CpICle~lf~s~~~v~~LpCG-----H~~H~~C~~~~~~~~-~~~CPiCrksi~ 200 (233)
.+.+..|+||++++. ...+ .++||+ |+||..|+++|+..+ +.+||+||..+.
T Consensus 12 ~~~~~~C~IC~~~~~-~~~~-l~~pC~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~ 69 (80)
T 2d8s_A 12 PSSQDICRICHCEGD-DESP-LITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFI 69 (80)
T ss_dssp CTTSCCCSSSCCCCC-SSSC-EECSSSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCC
T ss_pred CCCCCCCeEcCcccc-CCCe-eEeccccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeee
Confidence 345678999999854 3344 469996 999999999999853 369999998875
No 32
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=98.96 E-value=2.8e-10 Score=89.00 Aligned_cols=62 Identities=16% Similarity=0.481 Sum_probs=46.2
Q ss_pred CCCCcchhhhhcccCCceeEeccCCccChhhHHHHhccCCCcCCCCCccccchh--HHhhhhHHHHHh
Q 026787 150 HHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVIDMS--RTWKRIDEEIEA 215 (233)
Q Consensus 150 ~~~CpICle~lf~s~~~v~~LpCGH~~H~~C~~~~~~~~~~~CPiCrksi~dm~--~~~~~lD~~i~~ 215 (233)
+..||||++.+. ..+.++|||+||..|+..|+.....+||+||+.+.... .....|..+++.
T Consensus 52 ~~~C~IC~~~~~----~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~n~~l~~~i~~ 115 (124)
T 3fl2_A 52 TFQCICCQELVF----RPITTVCQHNVCKDCLDRSFRAQVFSCPACRYDLGRSYAMQVNQPLQTVLNQ 115 (124)
T ss_dssp HTBCTTTSSBCS----SEEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTTCCCCCCHHHHHHHHH
T ss_pred CCCCCcCChHHc----CcEEeeCCCcccHHHHHHHHhHCcCCCCCCCccCCCCCCCCCCHHHHHHHHH
Confidence 357999999864 23557999999999999999866679999999996411 223455555544
No 33
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=98.95 E-value=8.8e-11 Score=93.04 Aligned_cols=50 Identities=22% Similarity=0.555 Sum_probs=0.9
Q ss_pred CCCCCcchhhhhccc--------------CCceeEeccCCccChhhHHHHhccCCCcCCCCCccc
Q 026787 149 MHHHCPICYEYLFDS--------------LRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSV 199 (233)
Q Consensus 149 ~~~~CpICle~lf~s--------------~~~v~~LpCGH~~H~~C~~~~~~~~~~~CPiCrksi 199 (233)
.+.+|+||+++|.+. ...+..++|||.||..|+.+||.. +.+||+||+.+
T Consensus 47 ~~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~-~~~CP~Cr~~~ 110 (117)
T 4a0k_B 47 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKT-RQVCPLDNREW 110 (117)
T ss_dssp CC---------------------------------------------------------------
T ss_pred CCCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHc-CCcCCCCCCee
Confidence 456899999886431 113344699999999999999984 78999999875
No 34
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.95 E-value=3.8e-10 Score=78.09 Aligned_cols=43 Identities=28% Similarity=0.809 Sum_probs=35.2
Q ss_pred CCCCCcchhhhhcccCCceeEeccCCccChhhHHHHhcc--CCCcCCCC
Q 026787 149 MHHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKR--DKYCCPIC 195 (233)
Q Consensus 149 ~~~~CpICle~lf~s~~~v~~LpCGH~~H~~C~~~~~~~--~~~~CPiC 195 (233)
.+..||||++.+. ..++|+|||.||..|+.+|++. ...+||+|
T Consensus 19 ~~~~C~IC~~~~~----~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 19 EEVICPICLDILQ----KPVTIDCGHNFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCBCTTTCSBCS----SCEECTTSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred cCCCCCcCCchhC----CeEEeCCCCcchHHHHHHHHHcCCCCCcCcCC
Confidence 4568999999854 2455799999999999999974 46789998
No 35
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=98.95 E-value=1.3e-10 Score=86.00 Aligned_cols=48 Identities=27% Similarity=0.670 Sum_probs=38.8
Q ss_pred CCCCCcchhhhhcccCCceeEec-cCCccChhhHHHHhcc-CCCcCCCCCcccc
Q 026787 149 MHHHCPICYEYLFDSLRNTTVMK-CGHTMHCECYHEMIKR-DKYCCPICSKSVI 200 (233)
Q Consensus 149 ~~~~CpICle~lf~s~~~v~~Lp-CGH~~H~~C~~~~~~~-~~~~CPiCrksi~ 200 (233)
.+..||||++.|.+ .+.|+ |||+|+..|+.+|+.. +..+||+||+.+.
T Consensus 12 ~~~~C~IC~~~~~~----p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~ 61 (92)
T 3ztg_A 12 DELLCLICKDIMTD----AVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDV 61 (92)
T ss_dssp TTTEETTTTEECSS----CEECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSSC
T ss_pred cCCCCCCCChhhcC----ceECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcCC
Confidence 35679999997642 34688 9999999999999864 3479999999974
No 36
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=98.95 E-value=1.2e-10 Score=89.88 Aligned_cols=48 Identities=29% Similarity=0.887 Sum_probs=40.4
Q ss_pred CCCCcchhhhhcccCCceeEeccCCccChhhHHHHhccCCCcCCCCCccccc
Q 026787 150 HHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVID 201 (233)
Q Consensus 150 ~~~CpICle~lf~s~~~v~~LpCGH~~H~~C~~~~~~~~~~~CPiCrksi~d 201 (233)
+..||||++.+.+ .+.|+|||+|+..|+.+|+..+..+||+||+.+..
T Consensus 15 ~~~C~iC~~~~~~----p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 62 (115)
T 3l11_A 15 ECQCGICMEILVE----PVTLPCNHTLCKPCFQSTVEKASLCCPFCRRRVSS 62 (115)
T ss_dssp HHBCTTTCSBCSS----CEECTTSCEECHHHHCCCCCTTTSBCTTTCCBCHH
T ss_pred CCCCccCCcccCc----eeEcCCCCHHhHHHHHHHHhHCcCCCCCCCcccCc
Confidence 3579999998643 45679999999999999998667899999999863
No 37
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.94 E-value=5e-10 Score=75.69 Aligned_cols=43 Identities=28% Similarity=0.900 Sum_probs=35.1
Q ss_pred CCCCCcchhhhhcccCCceeEeccCCccChhhHHHHhcc--CCCcCCCC
Q 026787 149 MHHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKR--DKYCCPIC 195 (233)
Q Consensus 149 ~~~~CpICle~lf~s~~~v~~LpCGH~~H~~C~~~~~~~--~~~~CPiC 195 (233)
.+..||||++.+.+ .+.|+|||.||..|+.+|+.. ...+||+|
T Consensus 14 ~~~~C~IC~~~~~~----p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 14 VEASCSVCLEYLKE----PVIIECGHNFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp CCCBCSSSCCBCSS----CCCCSSCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred cCCCCccCCcccCc----cEeCCCCCccCHHHHHHHHHhcCCCCCCCCC
Confidence 45689999998643 245899999999999999653 57899998
No 38
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=98.93 E-value=1.7e-10 Score=82.65 Aligned_cols=48 Identities=33% Similarity=0.730 Sum_probs=39.4
Q ss_pred CCCCCcchhhhhcccCCceeEeccCCccChhhHHHHhccC------CCcCCCCCcccc
Q 026787 149 MHHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRD------KYCCPICSKSVI 200 (233)
Q Consensus 149 ~~~~CpICle~lf~s~~~v~~LpCGH~~H~~C~~~~~~~~------~~~CPiCrksi~ 200 (233)
.+..||||++.+.+ .+.|+|||.|+..|+.+|+... ..+||+||+.+.
T Consensus 11 ~~~~C~IC~~~~~~----p~~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~ 64 (79)
T 2egp_A 11 EEVTCPICLELLTE----PLSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYS 64 (79)
T ss_dssp CCCEETTTTEECSS----CCCCSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCC
T ss_pred cCCCCcCCCcccCC----eeECCCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCC
Confidence 35679999998532 3458999999999999999752 679999999986
No 39
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=98.92 E-value=5e-10 Score=84.21 Aligned_cols=48 Identities=27% Similarity=0.676 Sum_probs=39.8
Q ss_pred CCCCcchhhhhcccCCceeEeccCCccChhhHHHHhccCCCcCCCCCccccc
Q 026787 150 HHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVID 201 (233)
Q Consensus 150 ~~~CpICle~lf~s~~~v~~LpCGH~~H~~C~~~~~~~~~~~CPiCrksi~d 201 (233)
+..||||++.+.+ ++..++|||+||..|+.+|+. .+.+||+||+.+..
T Consensus 22 ~~~C~IC~~~~~~---p~~~~~CgH~fC~~Ci~~~~~-~~~~CP~Cr~~~~~ 69 (99)
T 2y43_A 22 LLRCGICFEYFNI---AMIIPQCSHNYCSLCIRKFLS-YKTQCPTCCVTVTE 69 (99)
T ss_dssp HTBCTTTCSBCSS---EEECTTTCCEEEHHHHHHHHT-TCCBCTTTCCBCCG
T ss_pred CCCcccCChhhCC---cCEECCCCCHhhHHHHHHHHH-CCCCCCCCCCcCCh
Confidence 4579999998643 444459999999999999998 46899999998873
No 40
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=98.91 E-value=4e-10 Score=87.01 Aligned_cols=65 Identities=20% Similarity=0.360 Sum_probs=49.5
Q ss_pred CCCCcchhhhhcccCCceeEeccCCccChhhHHHHhccCCCcCCCCCccccchh--HHhhhhHHHHHhCCC
Q 026787 150 HHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVIDMS--RTWKRIDEEIEATVM 218 (233)
Q Consensus 150 ~~~CpICle~lf~s~~~v~~LpCGH~~H~~C~~~~~~~~~~~CPiCrksi~dm~--~~~~~lD~~i~~~pm 218 (233)
+..||||++.+.+ + +.++|||.|+..|+.+|+.....+||+||+.+.... ...+.+.++|+..++
T Consensus 23 ~~~C~IC~~~~~~---p-~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~l~~~i~~l~v 89 (116)
T 1rmd_A 23 SISCQICEHILAD---P-VETSCKHLFCRICILRCLKVMGSYCPSCRYPCFPTDLESPVKSFLNILNSLMV 89 (116)
T ss_dssp HTBCTTTCSBCSS---E-EECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCBCCCHHHHHHHHHCEE
T ss_pred CCCCCCCCcHhcC---c-EEcCCCCcccHHHHHHHHhHCcCcCCCCCCCCCHhhccccHHHHHHHHHHhcC
Confidence 4579999998632 3 448999999999999999865789999999987422 234566676766655
No 41
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=98.91 E-value=6.6e-10 Score=90.88 Aligned_cols=48 Identities=27% Similarity=0.714 Sum_probs=40.5
Q ss_pred CCCcchhhhhcccCCceeEeccCCccChhhHHHHhccCCCcCCCCCccccc
Q 026787 151 HHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVID 201 (233)
Q Consensus 151 ~~CpICle~lf~s~~~v~~LpCGH~~H~~C~~~~~~~~~~~CPiCrksi~d 201 (233)
..||||++.+.+ ++..++|||+||..|+..|+..++.+||+||+.+..
T Consensus 55 ~~C~IC~~~~~~---p~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 102 (165)
T 2ckl_B 55 LMCPICLDMLKN---TMTTKECLHRFCADCIITALRSGNKECPTCRKKLVS 102 (165)
T ss_dssp HBCTTTSSBCSS---EEEETTTCCEEEHHHHHHHHHTTCCBCTTTCCBCCS
T ss_pred CCCcccChHhhC---cCEeCCCCChhHHHHHHHHHHhCcCCCCCCCCcCCC
Confidence 479999998643 556569999999999999998657899999999853
No 42
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.91 E-value=6.1e-10 Score=86.28 Aligned_cols=53 Identities=28% Similarity=0.636 Sum_probs=43.4
Q ss_pred CCCCCCcchhhhhccc---CCceeEeccCCccChhhHHHHhccCCCcCCCCCccccc
Q 026787 148 SMHHHCPICYEYLFDS---LRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVID 201 (233)
Q Consensus 148 ~~~~~CpICle~lf~s---~~~v~~LpCGH~~H~~C~~~~~~~~~~~CPiCrksi~d 201 (233)
.....||||++.+.+. ...+..++|||.||..|+++|+.. +.+||+||+++..
T Consensus 70 ~~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~-~~~CP~Cr~~~~~ 125 (133)
T 4ap4_A 70 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKN-ANTCPTCRKKINH 125 (133)
T ss_dssp SSSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHH-CSBCTTTCCBCCG
T ss_pred CCCCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHHc-CCCCCCCCCcCCh
Confidence 4567899999987542 234578899999999999999985 6799999999863
No 43
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=98.90 E-value=8e-10 Score=79.58 Aligned_cols=48 Identities=27% Similarity=0.605 Sum_probs=39.7
Q ss_pred CCCCCcchhhhhcccCCceeEeccCCccChhhHHHHhccC-----CCcCCCCCcccc
Q 026787 149 MHHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRD-----KYCCPICSKSVI 200 (233)
Q Consensus 149 ~~~~CpICle~lf~s~~~v~~LpCGH~~H~~C~~~~~~~~-----~~~CPiCrksi~ 200 (233)
.+..||||++.+.+ + ..++|||.||..|+.+|+... ..+||+||+.+.
T Consensus 18 ~~~~C~IC~~~~~~---p-~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~ 70 (85)
T 2ecw_A 18 EEVTCPICLELLKE---P-VSADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYP 70 (85)
T ss_dssp TTTSCTTTCSCCSS---C-EECTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCC
T ss_pred cCCCCcCCChhhCc---c-eeCCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCC
Confidence 35689999998533 3 468999999999999999852 689999999875
No 44
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.88 E-value=9.2e-10 Score=79.27 Aligned_cols=48 Identities=31% Similarity=0.725 Sum_probs=39.7
Q ss_pred CCCCCcchhhhhcccCCceeEeccCCccChhhHHHHhcc-----CCCcCCCCCcccc
Q 026787 149 MHHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKR-----DKYCCPICSKSVI 200 (233)
Q Consensus 149 ~~~~CpICle~lf~s~~~v~~LpCGH~~H~~C~~~~~~~-----~~~~CPiCrksi~ 200 (233)
....||||++.+.+ ...|+|||.||..|+.+|+.. ...+||+||+.+.
T Consensus 18 ~~~~C~IC~~~~~~----p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~ 70 (85)
T 2ecv_A 18 EEVTCPICLELLTQ----PLSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQ 70 (85)
T ss_dssp CCCCCTTTCSCCSS----CBCCSSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSC
T ss_pred CCCCCCCCCcccCC----ceeCCCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccC
Confidence 45689999998532 345799999999999999974 2689999999886
No 45
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=98.87 E-value=5.9e-10 Score=86.69 Aligned_cols=65 Identities=22% Similarity=0.423 Sum_probs=48.6
Q ss_pred CCCCcchhhhhcccCCceeEeccCCccChhhHHHHhccCCCcCCCCCccccchhH-HhhhhHHHHHhCCC
Q 026787 150 HHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVIDMSR-TWKRIDEEIEATVM 218 (233)
Q Consensus 150 ~~~CpICle~lf~s~~~v~~LpCGH~~H~~C~~~~~~~~~~~CPiCrksi~dm~~-~~~~lD~~i~~~pm 218 (233)
+..||||++.+.+ + +.++|||+|+..|+.+|+..+..+||+||+.+..... .-..+.++|.+.++
T Consensus 18 ~~~C~IC~~~~~~---p-~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~l~~~i~~l~v 83 (118)
T 3hct_A 18 KYECPICLMALRE---A-VQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQLFPDNFAKREILSLMV 83 (118)
T ss_dssp GGBCTTTCSBCSS---E-EECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGGGCEECHHHHHHHHTSEE
T ss_pred CCCCCcCChhhcC---e-EECCcCChhhHHHHHHHHhhCCCCCCCCCCCcCHHhcccCHHHHHHHcccee
Confidence 4579999998643 3 5589999999999999998655699999999875321 22456666776654
No 46
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=98.86 E-value=8.4e-10 Score=84.31 Aligned_cols=49 Identities=29% Similarity=0.675 Sum_probs=40.8
Q ss_pred CCCCCcchhhhhcccCCceeEeccCCccChhhHHHHhccCCCcCCCCCccccc
Q 026787 149 MHHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVID 201 (233)
Q Consensus 149 ~~~~CpICle~lf~s~~~v~~LpCGH~~H~~C~~~~~~~~~~~CPiCrksi~d 201 (233)
.+..||||++.+. +++..++|||+||..|+.+|+.. +.+||+||+.+..
T Consensus 14 ~~~~C~IC~~~~~---~p~~~~~CgH~fC~~Ci~~~~~~-~~~CP~Cr~~~~~ 62 (108)
T 2ckl_A 14 PHLMCVLCGGYFI---DATTIIECLHSFCKTCIVRYLET-SKYCPICDVQVHK 62 (108)
T ss_dssp GGTBCTTTSSBCS---SEEEETTTCCEEEHHHHHHHHTS-CSBCTTTCCBSCS
T ss_pred CcCCCccCChHHh---CcCEeCCCCChhhHHHHHHHHHh-CCcCcCCCccccc
Confidence 3568999999864 35555699999999999999984 6899999999874
No 47
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=98.79 E-value=2e-09 Score=87.72 Aligned_cols=63 Identities=16% Similarity=0.439 Sum_probs=46.2
Q ss_pred CCCCcchhhhhcccCCceeEeccCCccChhhHHHHhccCCCcCCCCCccccch--hHHhhhhHHHHHhC
Q 026787 150 HHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVIDM--SRTWKRIDEEIEAT 216 (233)
Q Consensus 150 ~~~CpICle~lf~s~~~v~~LpCGH~~H~~C~~~~~~~~~~~CPiCrksi~dm--~~~~~~lD~~i~~~ 216 (233)
...||||++.+.+ .+.++|||+|+..|+.+|+.....+||+||+.+..- ...-..|..+|+..
T Consensus 78 ~~~C~IC~~~~~~----pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~l~~n~~l~~lv~~~ 142 (150)
T 1z6u_A 78 SFMCVCCQELVYQ----PVTTECFHNVCKDCLQRSFKAQVFSCPACRHDLGQNYIMIPNEILQTLLDLF 142 (150)
T ss_dssp HTBCTTTSSBCSS----EEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTTCCCCBCHHHHHHHHHH
T ss_pred CCEeecCChhhcC----CEEcCCCCchhHHHHHHHHHhCCCcCCCCCccCCCCCCCCCCHHHHHHHHHH
Confidence 4579999997532 344899999999999999986667999999998742 12223455555543
No 48
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.77 E-value=2.6e-09 Score=81.29 Aligned_cols=47 Identities=26% Similarity=0.712 Sum_probs=38.1
Q ss_pred CCCCcchhhhhcccCCceeEeccCCccChhhHHHHhccC--CCcCCCCCcccc
Q 026787 150 HHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRD--KYCCPICSKSVI 200 (233)
Q Consensus 150 ~~~CpICle~lf~s~~~v~~LpCGH~~H~~C~~~~~~~~--~~~CPiCrksi~ 200 (233)
...||||++.+.+ ...++|||.||..|+.+|+... ..+||+||+.+.
T Consensus 21 ~~~C~IC~~~~~~----p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~ 69 (112)
T 1jm7_A 21 ILECPICLELIKE----PVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDIT 69 (112)
T ss_dssp HTSCSSSCCCCSS----CCBCTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCC
T ss_pred CCCCcccChhhcC----eEECCCCCHHHHHHHHHHHHhCCCCCCCcCCCCcCC
Confidence 4579999997532 3448999999999999999743 258999999886
No 49
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=98.70 E-value=3.8e-09 Score=74.34 Aligned_cols=54 Identities=22% Similarity=0.435 Sum_probs=41.9
Q ss_pred cCCCCCCCcchhhhhcccCCceeEe--ccCCc-cChhhHHHHhccCCCcCCCCCccccchhH
Q 026787 146 ENSMHHHCPICYEYLFDSLRNTTVM--KCGHT-MHCECYHEMIKRDKYCCPICSKSVIDMSR 204 (233)
Q Consensus 146 e~~~~~~CpICle~lf~s~~~v~~L--pCGH~-~H~~C~~~~~~~~~~~CPiCrksi~dm~~ 204 (233)
+...+..|+||++... .+.++ ||||. |-..|+..|.+ .+.+||+||+.+.+.-.
T Consensus 4 ~~~~~~~C~IC~~~~~----~~~~~~~pCgH~~~C~~C~~~~~~-~~~~CPiCR~~i~~~i~ 60 (64)
T 2vje_A 4 PLNAIEPCVICQGRPK----NGCIVHGKTGHLMACFTCAKKLKK-RNKPCPVCRQPIQMIVL 60 (64)
T ss_dssp -CGGGSCCTTTSSSCS----CEEEEETTEEEEEECHHHHHHHHH-TTCCCTTTCCCCCEEEE
T ss_pred CCCCcCCCCcCCCCCC----CEEEECCCCCChhhHHHHHHHHHH-cCCcCCCcCcchhceEe
Confidence 3455678999999742 34455 99999 78999999997 46799999999876433
No 50
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=98.64 E-value=6.2e-09 Score=73.00 Aligned_cols=53 Identities=21% Similarity=0.537 Sum_probs=41.1
Q ss_pred CCCCCCcchhhhhcccCCceeEe--ccCCc-cChhhHHHHhccCCCcCCCCCccccchhHH
Q 026787 148 SMHHHCPICYEYLFDSLRNTTVM--KCGHT-MHCECYHEMIKRDKYCCPICSKSVIDMSRT 205 (233)
Q Consensus 148 ~~~~~CpICle~lf~s~~~v~~L--pCGH~-~H~~C~~~~~~~~~~~CPiCrksi~dm~~~ 205 (233)
..+..|+||++... ...++ ||||. |...|+..|.+. +.+||+||+.+.+.-.+
T Consensus 5 ~~~~~C~IC~~~~~----~~~~~~~pCgH~~~C~~C~~~~~~~-~~~CPiCR~~i~~~i~i 60 (63)
T 2vje_B 5 NLLKPCSLCEKRPR----DGNIIHGRTGHLVTCFHCARRLKKA-GASCPICKKEIQLVIKV 60 (63)
T ss_dssp GGGSBCTTTSSSBS----CEEEEETTEEEEEECHHHHHHHHHT-TCBCTTTCCBCCEEEEE
T ss_pred CcCCCCcccCCcCC----CeEEEecCCCCHhHHHHHHHHHHHh-CCcCCCcCchhhceEEE
Confidence 34568999999743 23344 99998 999999999874 58999999999765433
No 51
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.62 E-value=5.8e-09 Score=71.25 Aligned_cols=45 Identities=22% Similarity=0.450 Sum_probs=36.5
Q ss_pred CCCCCCcchhhhhcccCCceeEeccCCccChhhHHHHhccCCCcCCCCCcccc
Q 026787 148 SMHHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVI 200 (233)
Q Consensus 148 ~~~~~CpICle~lf~s~~~v~~LpCGH~~H~~C~~~~~~~~~~~CPiCrksi~ 200 (233)
..+..||||++.+.+ .+.|+|||+|+..|+.+| ..+||+||+.+.
T Consensus 4 ~~~~~C~IC~~~~~~----p~~l~CgH~fC~~Ci~~~----~~~CP~Cr~~~~ 48 (56)
T 1bor_A 4 FQFLRCQQCQAEAKC----PKLLPCLHTLCSGCLEAS----GMQCPICQAPWP 48 (56)
T ss_dssp CCCSSCSSSCSSCBC----CSCSTTSCCSBTTTCSSS----SSSCSSCCSSSS
T ss_pred ccCCCceEeCCccCC----eEEcCCCCcccHHHHccC----CCCCCcCCcEee
Confidence 446689999998542 367999999999999773 579999999875
No 52
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=98.60 E-value=9.2e-09 Score=74.04 Aligned_cols=44 Identities=23% Similarity=0.582 Sum_probs=37.2
Q ss_pred CCCCcchhhhhcccCCceeEeccCCc-cChhhHHHHhccCCCcCCCCCccccch
Q 026787 150 HHHCPICYEYLFDSLRNTTVMKCGHT-MHCECYHEMIKRDKYCCPICSKSVIDM 202 (233)
Q Consensus 150 ~~~CpICle~lf~s~~~v~~LpCGH~-~H~~C~~~~~~~~~~~CPiCrksi~dm 202 (233)
+..|+||++.+. ....|||||. |+..|+..| .+||+||+.+...
T Consensus 24 ~~~C~iC~~~~~----~~~~~pCgH~~~C~~C~~~~-----~~CP~Cr~~i~~~ 68 (74)
T 4ic3_A 24 EKLCKICMDRNI----AIVFVPCGHLVTCKQCAEAV-----DKCPMCYTVITFK 68 (74)
T ss_dssp HTBCTTTSSSBC----CEEEETTCCBCCCHHHHTTC-----SBCTTTCCBCSEE
T ss_pred CCCCCCCCCCCC----CEEEcCCCChhHHHHhhhcC-----ccCCCcCcCccCc
Confidence 468999999753 4667899999 999999887 6899999998754
No 53
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=98.60 E-value=6.1e-09 Score=84.16 Aligned_cols=65 Identities=18% Similarity=0.416 Sum_probs=48.0
Q ss_pred CCCCcchhhhhcccCCceeEeccCCccChhhHHHHhccCCCcCCCCCccc--------cchhHHh--hhhHHHHHhCCC
Q 026787 150 HHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSV--------IDMSRTW--KRIDEEIEATVM 218 (233)
Q Consensus 150 ~~~CpICle~lf~s~~~v~~LpCGH~~H~~C~~~~~~~~~~~CPiCrksi--------~dm~~~~--~~lD~~i~~~pm 218 (233)
+..||||++.|.+ + +.++|||.|++.|+.+|+..+..+||+||+.+ ++....| ..+.++|.+.++
T Consensus 31 ~~~C~IC~~~~~~---p-v~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~l~~~~~~~d~~~~~~i~~L~v 105 (141)
T 3knv_A 31 KYLCSACRNVLRR---P-FQAQCGHRYCSFCLASILSSGPQNCAACVHEGIYEEGISILESSSAFPDNAARREVESLPA 105 (141)
T ss_dssp GGBCTTTCSBCSS---E-EECTTSCEEEHHHHHHHGGGSCEECHHHHHTTCCCTTTTEECGGGCEECHHHHHHHHTSEE
T ss_pred CcCCCCCChhhcC---c-EECCCCCccCHHHHHHHHhcCCCCCCCCCCcccccccccccchhhhcccHHHHHHHccccc
Confidence 4579999998643 3 45899999999999999986667999999964 2333344 345666766654
No 54
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.57 E-value=2.5e-08 Score=77.30 Aligned_cols=45 Identities=22% Similarity=0.535 Sum_probs=37.1
Q ss_pred CCCCcchhhhhcccCCceeEeccCCccChhhHHHHhccCCCcCCCCCcccc
Q 026787 150 HHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVI 200 (233)
Q Consensus 150 ~~~CpICle~lf~s~~~v~~LpCGH~~H~~C~~~~~~~~~~~CPiCrksi~ 200 (233)
+..||||++.+. +++...+|||+|+..|+..|+. .+||+||+.+.
T Consensus 22 ~~~C~IC~~~~~---~pv~~~~CgH~fC~~Ci~~~~~---~~CP~Cr~~~~ 66 (117)
T 1jm7_B 22 LLRCSRCTNILR---EPVCLGGCEHIFCSNCVSDCIG---TGCPVCYTPAW 66 (117)
T ss_dssp TTSCSSSCSCCS---SCBCCCSSSCCBCTTTGGGGTT---TBCSSSCCBCS
T ss_pred CCCCCCCChHhh---CccEeCCCCCHHHHHHHHHHhc---CCCcCCCCcCc
Confidence 568999999853 2444339999999999999986 78999999885
No 55
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=98.55 E-value=1.9e-08 Score=82.36 Aligned_cols=65 Identities=22% Similarity=0.423 Sum_probs=47.8
Q ss_pred CCCCcchhhhhcccCCceeEeccCCccChhhHHHHhccCCCcCCCCCccccchhH-HhhhhHHHHHhCCC
Q 026787 150 HHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVIDMSR-TWKRIDEEIEATVM 218 (233)
Q Consensus 150 ~~~CpICle~lf~s~~~v~~LpCGH~~H~~C~~~~~~~~~~~CPiCrksi~dm~~-~~~~lD~~i~~~pm 218 (233)
+..||||++.|.+ + +.++|||+|++.|+.+|+..+..+||+||+.+..-.. .-..+.++|.+.++
T Consensus 18 ~~~C~IC~~~~~~---p-v~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~~~~~~~i~~l~v 83 (170)
T 3hcs_A 18 KYECPICLMALRE---A-VQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQLFPDNFAKREILSLMV 83 (170)
T ss_dssp GGBCTTTCSBCSS---E-EECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGGGCEECHHHHHHHHTSEE
T ss_pred CCCCCCCChhhcC---c-EECCCCCHHHHHHHHHHHHhCCCCCCCCccCcchhhhhhhHHHHHHHhhccc
Confidence 4579999998643 3 4489999999999999997655699999999875221 11345566666554
No 56
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=98.47 E-value=7.8e-08 Score=89.90 Aligned_cols=49 Identities=24% Similarity=0.608 Sum_probs=41.4
Q ss_pred CCCCCcchhhhhcccCCceeEeccCCccChhhHHHHhccCCCcCCCCCccccc
Q 026787 149 MHHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVID 201 (233)
Q Consensus 149 ~~~~CpICle~lf~s~~~v~~LpCGH~~H~~C~~~~~~~~~~~CPiCrksi~d 201 (233)
....|+||++.+ ..++.+||||.||..|+.+|+.....+||+||+.+..
T Consensus 331 ~~~~C~ICle~~----~~pv~lpCGH~FC~~Ci~~wl~~~~~~CP~CR~~i~~ 379 (389)
T 2y1n_A 331 TFQLCKICAEND----KDVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKG 379 (389)
T ss_dssp SSSBCTTTSSSB----CCEEEETTCCEECHHHHHHHHHHTCSBCTTTCCBCCE
T ss_pred CCCCCCccCcCC----CCeEEeCCCChhhHHHHHHHHhcCCCCCCCCCCccCC
Confidence 346899999985 3467799999999999999997457899999999875
No 57
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.46 E-value=8.5e-08 Score=70.15 Aligned_cols=48 Identities=25% Similarity=0.585 Sum_probs=37.7
Q ss_pred CCCCcchhhhhcccCCceeEeccCCccChhhHHHHhccC-CCcCCCCCcccc
Q 026787 150 HHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRD-KYCCPICSKSVI 200 (233)
Q Consensus 150 ~~~CpICle~lf~s~~~v~~LpCGH~~H~~C~~~~~~~~-~~~CPiCrksi~ 200 (233)
..+|+||.+.+.. ...-..|||.||..|+.+||+.. +.+||+|++...
T Consensus 15 i~~C~IC~~~i~~---g~~C~~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~ 63 (74)
T 2ct0_A 15 VKICNICHSLLIQ---GQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWP 63 (74)
T ss_dssp SCBCSSSCCBCSS---SEECSSSCCEECHHHHHHHSTTCSSCCCTTTCSCCC
T ss_pred CCcCcchhhHccc---CCccCCCCchhhHHHHHHHHHhcCCCCCCCCcCcCC
Confidence 4689999998643 33444899999999999999853 278999997754
No 58
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.41 E-value=7.2e-08 Score=68.71 Aligned_cols=51 Identities=22% Similarity=0.419 Sum_probs=40.7
Q ss_pred CCCCCCCcchhhhhcccCCceeEeccCCc-cChhhHHHHhccCCCcCCCCCccccchhHHh
Q 026787 147 NSMHHHCPICYEYLFDSLRNTTVMKCGHT-MHCECYHEMIKRDKYCCPICSKSVIDMSRTW 206 (233)
Q Consensus 147 ~~~~~~CpICle~lf~s~~~v~~LpCGH~-~H~~C~~~~~~~~~~~CPiCrksi~dm~~~~ 206 (233)
...+..|+||++.. ..++.|||||. |...|+.. ..+||+||+.|.....+|
T Consensus 12 ~~~~~~C~IC~~~~----~~~v~~pCgH~~~C~~C~~~-----~~~CP~CR~~i~~~~~i~ 63 (68)
T 2ea5_A 12 EENSKDCVVCQNGT----VNWVLLPCRHTCLCDGCVKY-----FQQCPMCRQFVQESFALS 63 (68)
T ss_dssp CCCSSCCSSSSSSC----CCCEETTTTBCCSCTTHHHH-----CSSCTTTCCCCCCEECCC
T ss_pred CCCCCCCCCcCcCC----CCEEEECCCChhhhHHHHhc-----CCCCCCCCcchhceEEee
Confidence 34467899999973 35788999999 99999983 368999999998765544
No 59
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.41 E-value=6.2e-08 Score=69.60 Aligned_cols=44 Identities=23% Similarity=0.557 Sum_probs=35.5
Q ss_pred CCCCcchhhhhcccCCceeEeccCCc-cChhhHHHHhccCCCcCCCCCccccch
Q 026787 150 HHHCPICYEYLFDSLRNTTVMKCGHT-MHCECYHEMIKRDKYCCPICSKSVIDM 202 (233)
Q Consensus 150 ~~~CpICle~lf~s~~~v~~LpCGH~-~H~~C~~~~~~~~~~~CPiCrksi~dm 202 (233)
+..|+||++.+. .+..|||||. |...|+.. ..+||+||+.+...
T Consensus 25 ~~~C~IC~~~~~----~~~~~pCgH~~~C~~C~~~-----~~~CP~Cr~~i~~~ 69 (75)
T 2ecg_A 25 EKLCKICMDRNI----AIVFVPCGHLVTCKQCAEA-----VDKCPMCYTVITFK 69 (75)
T ss_dssp HHSCSSSCSSCC----CBCCSSSCCCCBCHHHHHH-----CSBCTTTCCBCCCC
T ss_pred CCCCCcCCCCCC----CEEEecCCCHHHHHHHhhC-----CCCCccCCceecCc
Confidence 347999999742 4567899999 99999964 36899999998764
No 60
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=98.37 E-value=1.4e-07 Score=69.68 Aligned_cols=47 Identities=9% Similarity=0.081 Sum_probs=39.8
Q ss_pred CCCCCcchhhhhcccCCceeEeccCCccChhhHHHHhccCCCcCCCCCcccc
Q 026787 149 MHHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVI 200 (233)
Q Consensus 149 ~~~~CpICle~lf~s~~~v~~LpCGH~~H~~C~~~~~~~~~~~CPiCrksi~ 200 (233)
.+-.||||++.|. ..++++|||+|-+.||.+|+.. +.+||+|++.+.
T Consensus 13 ~~~~CpI~~~~m~----dPV~~~cGhtf~r~~I~~~l~~-~~~cP~~~~~l~ 59 (85)
T 2kr4_A 13 DEFRDPLMDTLMT----DPVRLPSGTVMDRSIILRHLLN-SPTDPFNRQMLT 59 (85)
T ss_dssp TTTBCTTTCSBCS----SEEECTTSCEEEHHHHHHHHHH-CSBCTTTCCBCC
T ss_pred hheECcccCchhc----CCeECCCCCEECHHHHHHHHhc-CCCCCCCcCCCC
Confidence 3568999999864 3456889999999999999984 789999999875
No 61
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.35 E-value=2.3e-07 Score=69.17 Aligned_cols=49 Identities=20% Similarity=0.484 Sum_probs=37.3
Q ss_pred CCCCCcchhhhhcccCCceeEeccCCccChhhHHHHhcc-------CCCcCCC--CCcc
Q 026787 149 MHHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKR-------DKYCCPI--CSKS 198 (233)
Q Consensus 149 ~~~~CpICle~lf~s~~~v~~LpCGH~~H~~C~~~~~~~-------~~~~CPi--Crks 198 (233)
....||||++++ .....+..++|||.|.+.|+.+|+.. ...+||. |+..
T Consensus 4 ~~~~C~IC~~~~-~~~~~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~ 61 (94)
T 1wim_A 4 GSSGCKLCLGEY-PVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQ 61 (94)
T ss_dssp SBCCCSSSCCCC-BGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSC
T ss_pred CCcCCcccCccc-ccccceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCC
Confidence 456899999985 33233333479999999999999863 1368999 9998
No 62
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=98.34 E-value=2.2e-07 Score=70.92 Aligned_cols=47 Identities=9% Similarity=0.111 Sum_probs=39.8
Q ss_pred CCCCCcchhhhhcccCCceeEeccCCccChhhHHHHhccCCCcCCCCCcccc
Q 026787 149 MHHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVI 200 (233)
Q Consensus 149 ~~~~CpICle~lf~s~~~v~~LpCGH~~H~~C~~~~~~~~~~~CPiCrksi~ 200 (233)
.+-.||||++.|. +.++++|||+|-+.||.+|+. ++.+||+|++.+.
T Consensus 28 ~~~~CpI~~~~m~----dPV~~~cGhtf~r~~I~~~l~-~~~~cP~~~~~l~ 74 (100)
T 2kre_A 28 DEFRDPLMDTLMT----DPVRLPSGTIMDRSIILRHLL-NSPTDPFNRQTLT 74 (100)
T ss_dssp TTTBCTTTCSBCS----SEEEETTTEEEEHHHHHHHTT-SCSBCSSSCCBCC
T ss_pred HhhCCcCccCccc----CCeECCCCCEEchHHHHHHHH-cCCCCCCCCCCCC
Confidence 3568999999763 345688999999999999998 4789999999886
No 63
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=98.33 E-value=2.8e-07 Score=64.50 Aligned_cols=50 Identities=26% Similarity=0.524 Sum_probs=38.6
Q ss_pred cCCCCCCCcchhhhhcccCCceeEeccC--C---ccChhhHHHHhcc-CCCcCCCCCccc
Q 026787 146 ENSMHHHCPICYEYLFDSLRNTTVMKCG--H---TMHCECYHEMIKR-DKYCCPICSKSV 199 (233)
Q Consensus 146 e~~~~~~CpICle~lf~s~~~v~~LpCG--H---~~H~~C~~~~~~~-~~~~CPiCrksi 199 (233)
|......|.||+++. + .+. ++||. + ++|..|+.+|+.. ++.+||+|+..+
T Consensus 2 e~~~~~~CrIC~~~~-~--~~l-~~PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~ 57 (60)
T 1vyx_A 2 EDEDVPVCWICNEEL-G--NER-FRACGCTGELENVHRSCLSTWLTISRNTACQICGVVY 57 (60)
T ss_dssp TTCSCCEETTTTEEC-S--CCC-CCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBC
T ss_pred CCCCCCEeEEeecCC-C--Cce-ecCcCCCCchhhhHHHHHHHHHHhCCCCccCCCCCee
Confidence 456677899999972 2 233 68964 4 9999999999974 468999999765
No 64
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.33 E-value=3.4e-07 Score=78.85 Aligned_cols=51 Identities=14% Similarity=0.139 Sum_probs=41.6
Q ss_pred cCCCCCCCcchhhhhcccCCceeEeccCCccChhhHHHHhccCCCcCCCCCcccc
Q 026787 146 ENSMHHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVI 200 (233)
Q Consensus 146 e~~~~~~CpICle~lf~s~~~v~~LpCGH~~H~~C~~~~~~~~~~~CPiCrksi~ 200 (233)
+....-.||||++.|. ..+++||||+|.+.||..|+..+..+||+|++++.
T Consensus 204 ~~~~~~~c~i~~~~~~----dPv~~~~gh~f~~~~i~~~~~~~~~~cP~~~~~~~ 254 (281)
T 2c2l_A 204 DIPDYLCGKISFELMR----EPCITPSGITYDRKDIEEHLQRVGHFNPVTRSPLT 254 (281)
T ss_dssp CCCSTTBCTTTCSBCS----SEEECSSCCEEETTHHHHHHHHTCSSCTTTCCCCC
T ss_pred CCCcccCCcCcCCHhc----CCeECCCCCEECHHHHHHHHHHCCCCCcCCCCCCc
Confidence 4455678999999753 23468999999999999999865566999999986
No 65
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=98.29 E-value=3.8e-07 Score=69.37 Aligned_cols=47 Identities=11% Similarity=0.093 Sum_probs=39.7
Q ss_pred CCCCCcchhhhhcccCCceeEeccC-CccChhhHHHHhccCCCcCCCCCcccc
Q 026787 149 MHHHCPICYEYLFDSLRNTTVMKCG-HTMHCECYHEMIKRDKYCCPICSKSVI 200 (233)
Q Consensus 149 ~~~~CpICle~lf~s~~~v~~LpCG-H~~H~~C~~~~~~~~~~~CPiCrksi~ 200 (233)
.+-.||||++.|. +.++++|| |+|-+.||.+|+.. +.+||+|++.+.
T Consensus 21 ~~~~CpI~~~~m~----dPV~~~cG~htf~r~cI~~~l~~-~~~cP~~~~~l~ 68 (98)
T 1wgm_A 21 DEFLDPIMSTLMC----DPVVLPSSRVTVDRSTIARHLLS-DQTDPFNRSPLT 68 (98)
T ss_dssp TTTBCTTTCSBCS----SEEECTTTCCEEEHHHHHHHTTT-SCBCTTTCSBCC
T ss_pred HhcCCcCcccccc----CCeECCCCCeEECHHHHHHHHHh-CCCCCCCCCCCC
Confidence 3568999999764 33558999 99999999999984 789999999886
No 66
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.29 E-value=4.4e-07 Score=68.09 Aligned_cols=46 Identities=33% Similarity=0.588 Sum_probs=36.4
Q ss_pred CCCCCcchhhhhcccCCceeEe-ccCCccChhhHHHHhccC-----CCcCCC--CCcc
Q 026787 149 MHHHCPICYEYLFDSLRNTTVM-KCGHTMHCECYHEMIKRD-----KYCCPI--CSKS 198 (233)
Q Consensus 149 ~~~~CpICle~lf~s~~~v~~L-pCGH~~H~~C~~~~~~~~-----~~~CPi--Crks 198 (233)
.+-.||||++.|. ++| ++ .|||+|-+.||.+|+..+ ..+||+ |++.
T Consensus 6 ~~~~CPI~~~~~~---dPV-~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~ 59 (94)
T 2yu4_A 6 SGFTCPITKEEMK---KPV-KNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHT 59 (94)
T ss_dssp SCCBCTTTCSBCS---SEE-EESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCC
T ss_pred cEeECcCcCchhc---CCE-EcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCccc
Confidence 3567999999753 244 46 599999999999999742 369999 9966
No 67
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=98.27 E-value=8.1e-08 Score=70.29 Aligned_cols=48 Identities=29% Similarity=0.662 Sum_probs=39.2
Q ss_pred CCCCcchhhhhcccCCceeEeccCCc-cChhhHHHHhccCCCcCCCCCccccchhHHh
Q 026787 150 HHHCPICYEYLFDSLRNTTVMKCGHT-MHCECYHEMIKRDKYCCPICSKSVIDMSRTW 206 (233)
Q Consensus 150 ~~~CpICle~lf~s~~~v~~LpCGH~-~H~~C~~~~~~~~~~~CPiCrksi~dm~~~~ 206 (233)
+..|+||++.+ ..+..+||||. |...|+..| .+||+||+.+......|
T Consensus 18 ~~~C~IC~~~~----~~~v~~pCgH~~~C~~C~~~~-----~~CP~Cr~~i~~~~~i~ 66 (79)
T 2yho_A 18 AMLCMVCCEEE----INSTFCPCGHTVCCESCAAQL-----QSCPVCRSRVEHVQHVY 66 (79)
T ss_dssp HTBCTTTSSSB----CCEEEETTCBCCBCHHHHTTC-----SBCTTTCCBCCEEEECB
T ss_pred CCEeEEeCccc----CcEEEECCCCHHHHHHHHHhc-----CcCCCCCchhhCeEEEE
Confidence 45799999874 35678999999 999999866 39999999998765544
No 68
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=98.14 E-value=4.8e-07 Score=83.74 Aligned_cols=53 Identities=26% Similarity=0.518 Sum_probs=39.6
Q ss_pred CCCCCCcchhhhhcccCC-ce---eEeccCCccChhhHHHHhccC----------CCcCCCCCcccc
Q 026787 148 SMHHHCPICYEYLFDSLR-NT---TVMKCGHTMHCECYHEMIKRD----------KYCCPICSKSVI 200 (233)
Q Consensus 148 ~~~~~CpICle~lf~s~~-~v---~~LpCGH~~H~~C~~~~~~~~----------~~~CPiCrksi~ 200 (233)
....+|+||++.+.++.+ +. ..++|||.||..|+.+|+++. ..+||.||+.|.
T Consensus 306 e~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs 372 (381)
T 3k1l_B 306 NEELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLS 372 (381)
T ss_dssp CSCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEE
T ss_pred cCCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCC
Confidence 456789999999765222 11 135799999999999999742 157999999775
No 69
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=97.97 E-value=6.1e-06 Score=69.55 Aligned_cols=48 Identities=15% Similarity=0.148 Sum_probs=39.0
Q ss_pred CCCCCcchhhhhcccCCceeEeccCCccChhhHHHHhccCCCcCCCCCcccc
Q 026787 149 MHHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVI 200 (233)
Q Consensus 149 ~~~~CpICle~lf~s~~~v~~LpCGH~~H~~C~~~~~~~~~~~CPiCrksi~ 200 (233)
.+-.||||++.|.+ .+++||||+|-+.||..|+..+..+||+|++++.
T Consensus 105 ~~f~CPI~~elm~D----PV~~~~Ghtfer~~I~~~l~~~~~tcP~t~~~l~ 152 (179)
T 2f42_A 105 DYLCGKISFELMRE----PCITPSGITYDRKDIEEHLQRVGHFDPVTRSPLT 152 (179)
T ss_dssp GGGBCTTTCSBCSS----EEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred HhhcccCccccCCC----CeECCCCCEECHHHHHHHHHhCCCCCCCCcCCCC
Confidence 45679999997642 3456999999999999999754457999999885
No 70
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=97.82 E-value=6.1e-06 Score=73.58 Aligned_cols=50 Identities=22% Similarity=0.436 Sum_probs=41.3
Q ss_pred CCCCCCcchhhhhcccCCceeEeccCCccChhhHHHHhcc-CCCcCCC--CCcccc
Q 026787 148 SMHHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKR-DKYCCPI--CSKSVI 200 (233)
Q Consensus 148 ~~~~~CpICle~lf~s~~~v~~LpCGH~~H~~C~~~~~~~-~~~~CPi--Crksi~ 200 (233)
..+..||||++.|. +||+.+.|||+|-+.||.+|+.. +..+||+ |++.+.
T Consensus 179 ~~el~CPIcl~~f~---DPVts~~CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~ 231 (267)
T 3htk_C 179 KIELTCPITCKPYE---APLISRKCNHVFDRDGIQNYLQGYTTRDCPQAACSQVVS 231 (267)
T ss_dssp BCCSBCTTTSSBCS---SEEEESSSCCEEEHHHHHHHSTTCSCEECSGGGCSCEEC
T ss_pred ceeeECcCccCccc---CCeeeCCCCCcccHHHHHHHHHhCCCCCCCcccccCcCc
Confidence 34568999999863 57877799999999999999974 3468999 999775
No 71
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=97.81 E-value=3.7e-06 Score=77.22 Aligned_cols=44 Identities=25% Similarity=0.680 Sum_probs=37.1
Q ss_pred CCCCcchhhhhcccCCceeEeccCCc-cChhhHHHHhccCCCcCCCCCccccch
Q 026787 150 HHHCPICYEYLFDSLRNTTVMKCGHT-MHCECYHEMIKRDKYCCPICSKSVIDM 202 (233)
Q Consensus 150 ~~~CpICle~lf~s~~~v~~LpCGH~-~H~~C~~~~~~~~~~~CPiCrksi~dm 202 (233)
+..||||++.+. .+..|||||. |...|+..| .+||+||+.+...
T Consensus 295 ~~~C~IC~~~~~----~~v~lpCgH~~fC~~C~~~~-----~~CP~CR~~i~~~ 339 (345)
T 3t6p_A 295 ERTCKVCMDKEV----SVVFIPCGHLVVCQECAPSL-----RKCPICRGIIKGT 339 (345)
T ss_dssp TCBCTTTSSSBC----CEEEETTCCEEECTTTGGGC-----SBCTTTCCBCCEE
T ss_pred CCCCCccCCcCC----ceEEcCCCChhHhHHHHhcC-----CcCCCCCCCccCe
Confidence 468999999853 4677899999 999999877 6899999998754
No 72
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=97.35 E-value=8.7e-05 Score=57.23 Aligned_cols=50 Identities=22% Similarity=0.440 Sum_probs=41.4
Q ss_pred CCcchhhhhcccCCceeEeccCCccChhhHHHHhccCCCcCCCCCccccchhH
Q 026787 152 HCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVIDMSR 204 (233)
Q Consensus 152 ~CpICle~lf~s~~~v~~LpCGH~~H~~C~~~~~~~~~~~CPiCrksi~dm~~ 204 (233)
-|++|.-++. ...+.+||+|+|.-+|+..|.+.+..+||+|+.+|.+++.
T Consensus 3 fC~~C~~Pi~---iygRmIPCkHvFCydCa~~~~~~~~k~Cp~C~~~V~rVe~ 52 (101)
T 3vk6_A 3 FCDKCGLPIK---VYGRMIPCKHVFCYDCAILHEKKGDKMCPGCSDPVQRIEQ 52 (101)
T ss_dssp BCTTTCSBCS---EEEEEETTCCEEEHHHHHHHHHTTCCBCTTTCCBCSEEEE
T ss_pred ecCccCCCeE---EEeeeccccccHHHHHHHHHHhccCCCCcCcCCeeeeeEE
Confidence 4788876643 3567889999999999999987677899999999987654
No 73
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=97.27 E-value=8.3e-05 Score=51.80 Aligned_cols=48 Identities=17% Similarity=0.133 Sum_probs=38.2
Q ss_pred CCCCCcchhhhhcccCCceeEeccCCccChhhHHHHhccCCCcCCCCCcccc
Q 026787 149 MHHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVI 200 (233)
Q Consensus 149 ~~~~CpICle~lf~s~~~v~~LpCGH~~H~~C~~~~~~~~~~~CPiCrksi~ 200 (233)
+...|||+++-|. ++|...++||+|=+.++.+|++. +.+||+.++.+.
T Consensus 2 ~~~~CpIs~~~m~---dPV~~~~sG~~yer~~I~~~l~~-~~~cP~t~~~L~ 49 (61)
T 2bay_A 2 SHMLCAISGKVPR---RPVLSPKSRTIFEKSLLEQYVKD-TGNDPITNEPLS 49 (61)
T ss_dssp --CCCTTTCSCCS---SEEEETTTTEEEEHHHHHHHHHH-HSBCTTTCCBCC
T ss_pred CeEEecCCCCCCC---CCEEeCCCCcEEcHHHHHHHHHh-CCCCcCCcCCCC
Confidence 3467999999864 34444489999999999999984 578999999875
No 74
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=95.81 E-value=0.0054 Score=53.38 Aligned_cols=47 Identities=26% Similarity=0.615 Sum_probs=35.0
Q ss_pred CCCCcchhhhhcccCCceeEeccCCccChhhHHHHhccC-CCcCCCCCccc
Q 026787 150 HHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRD-KYCCPICSKSV 199 (233)
Q Consensus 150 ~~~CpICle~lf~s~~~v~~LpCGH~~H~~C~~~~~~~~-~~~CPiCrksi 199 (233)
-..|.||.+-+.. ..+--.|+|.||..|+..|+++. +.+||.|+...
T Consensus 180 i~~C~iC~~iv~~---g~~C~~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W 227 (238)
T 3nw0_A 180 VKICNICHSLLIQ---GQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYW 227 (238)
T ss_dssp CCBCTTTCSBCSS---CEECSSSCCEECHHHHHHHTTTCSSCBCTTTCCBC
T ss_pred CCcCcchhhHHhC---CcccCccChHHHHHHHHHHHHhCCCCCCCCCCCCC
Confidence 4568888876542 23333499999999999999753 46999999753
No 75
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=90.84 E-value=0.092 Score=40.03 Aligned_cols=44 Identities=20% Similarity=0.580 Sum_probs=35.4
Q ss_pred CCCCcchhhhhcccCCceeEeccC-CccChhhHHHHhccCCCcCCCCCcccc
Q 026787 150 HHHCPICYEYLFDSLRNTTVMKCG-HTMHCECYHEMIKRDKYCCPICSKSVI 200 (233)
Q Consensus 150 ~~~CpICle~lf~s~~~v~~LpCG-H~~H~~C~~~~~~~~~~~CPiCrksi~ 200 (233)
..||-.|+-. +. ..+.|. |++...|+..+|+ .+.+||||.+.+-
T Consensus 28 ~~nCKsCWf~-~k-----~LV~C~dHYLCl~CLtlmL~-~SdrCpIC~~pLP 72 (99)
T 2ko5_A 28 PQFCKSCWFE-NK-----GLVECNNHYLCLNCLTLLLS-VSNRCPICKMPLP 72 (99)
T ss_dssp CCCCCSSCSC-CS-----SEEECSSCEEEHHHHHHTCS-SSSEETTTTEECC
T ss_pred cccChhhccc-cC-----CeeeecchhhHHHHHHHHHh-hccCCcccCCcCC
Confidence 4588889843 22 356885 9999999999998 4789999999885
No 76
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=90.60 E-value=0.07 Score=39.45 Aligned_cols=28 Identities=29% Similarity=0.701 Sum_probs=15.9
Q ss_pred ecCCCCccccccCcCCCCCCCcceeecCccccc
Q 026787 67 ICSVCDTEQPVAQVCTNCGVNMGEYFCDICKFY 99 (233)
Q Consensus 67 ~C~~C~~~q~~~~~C~~Cg~~f~~Y~C~~C~l~ 99 (233)
+|..|+.++.+ |..||+. .|||..|+=.
T Consensus 33 fCPeCgq~Le~---lkACGA~--~yFC~~C~~L 60 (81)
T 2jrp_A 33 LCPDCRQPLQV---LKACGAV--DYFCQNGHGL 60 (81)
T ss_dssp ECSSSCSCCCE---EEETTEE--EECCTTTTCC
T ss_pred cCcchhhHHHH---HHhcCCc--CeeeccCCCE
Confidence 55555544333 5555554 7888888643
No 77
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=89.46 E-value=0.18 Score=37.03 Aligned_cols=35 Identities=14% Similarity=0.282 Sum_probs=26.1
Q ss_pred CCCCCcchhhhhcccCCceeE-eccCCccChhhHHH-Hh
Q 026787 149 MHHHCPICYEYLFDSLRNTTV-MKCGHTMHCECYHE-MI 185 (233)
Q Consensus 149 ~~~~CpICle~lf~s~~~v~~-LpCGH~~H~~C~~~-~~ 185 (233)
.+..|+||++..+. .++.. |.|||+|-..|+.. |.
T Consensus 2 ee~~C~~C~~~~~~--~av~~C~~C~~~~C~~Cl~~~h~ 38 (101)
T 2jun_A 2 EKVLCQFCDQDPAQ--DAVKTCVTCEVSYCDECLKATHP 38 (101)
T ss_dssp CCCBCTTCCSSSCC--BCCEEETTTTEEECHHHHHHHSC
T ss_pred CCCCCcCCCCCCCC--CceEECCcCChHHhHHHCHHHhc
Confidence 35679999986443 23433 99999999999998 43
No 78
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=87.80 E-value=0.45 Score=38.45 Aligned_cols=65 Identities=17% Similarity=0.462 Sum_probs=41.8
Q ss_pred ecCCCCCCCcchhhhhcccCCceeE-eccCCccChhhHHHHh----------ccCCCcCCCCCccc-cch----hHHhhh
Q 026787 145 IENSMHHHCPICYEYLFDSLRNTTV-MKCGHTMHCECYHEMI----------KRDKYCCPICSKSV-IDM----SRTWKR 208 (233)
Q Consensus 145 ~e~~~~~~CpICle~lf~s~~~v~~-LpCGH~~H~~C~~~~~----------~~~~~~CPiCrksi-~dm----~~~~~~ 208 (233)
.+...+..|.||.+. . .+.. =.|--+||..|+..-+ ......||+|+... .+. ...++.
T Consensus 58 d~Dg~~d~C~vC~~G----G-~LlcCD~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~~~pl~~l~~~c~~~~~~ 132 (142)
T 2lbm_A 58 DSDGMDEQCRWCAEG----G-NLICCDFCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICHPEPLLDLVTACNSVFEN 132 (142)
T ss_dssp CTTSCBCSCSSSCCC----S-SEEECSSSCCEEEHHHHHHHTCHHHHHHHHTSTTCCCCTTTCCCTTHHHHHHHHHHHHH
T ss_pred cCCCCCCeecccCCC----C-cEEeCCCCCCeeeHhhcCCCCChhhhhhcccCCCCCEeecccCccHHHHHHHHHHHHHH
Confidence 456778899999975 1 2222 1588999999999654 23578999999543 222 234455
Q ss_pred hHHHHH
Q 026787 209 IDEEIE 214 (233)
Q Consensus 209 lD~~i~ 214 (233)
||+.++
T Consensus 133 ~~~~~~ 138 (142)
T 2lbm_A 133 LEQLLQ 138 (142)
T ss_dssp HHHHHT
T ss_pred HHHHHh
Confidence 555443
No 79
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=87.34 E-value=0.12 Score=39.14 Aligned_cols=83 Identities=22% Similarity=0.599 Sum_probs=44.7
Q ss_pred CCCcceeCCc-cceeeccccCc-----ccccccc----ccceeecCCCCCCCcchhhhhcccCCceeEeccCCccChhhH
Q 026787 112 DCGICRIGGR-ENYFHCKRCGS-----CYSTSLR----NNHLCIENSMHHHCPICYEYLFDSLRNTTVMKCGHTMHCECY 181 (233)
Q Consensus 112 ~CgiCR~G~~-~~~fHC~~C~~-----C~s~~l~----~~H~C~e~~~~~~CpICle~lf~s~~~v~~LpCGH~~H~~C~ 181 (233)
.|.||..+|. ++...|+.|+. |+.+.+. +.=.|.+= ..|.||.+.- +...-+.--.|.-.||..|+
T Consensus 9 ~C~~C~~~g~~~~ll~C~~C~~~~H~~Cl~~~~~~~~~~~W~C~~C---~~C~~C~~~~-~~~~ll~Cd~C~~~yH~~Cl 84 (111)
T 2ysm_A 9 NCAVCDSPGDLLDQFFCTTCGQHYHGMCLDIAVTPLKRAGWQCPEC---KVCQNCKQSG-EDSKMLVCDTCDKGYHTFCL 84 (111)
T ss_dssp CBTTTCCCCCTTTSEECSSSCCEECTTTTTCCCCTTTSTTCCCTTT---CCCTTTCCCS-CCTTEEECSSSCCEEEGGGS
T ss_pred CCcCCCCCCCCcCCeECCCCCCCcChHHhCCccccccccCccCCcC---CcccccCccC-CCCCeeECCCCCcHHhHHhc
Confidence 4666666653 45677777764 4443321 11111110 1467777641 11111222258899999999
Q ss_pred HHHhcc---CCCcCCCCCcc
Q 026787 182 HEMIKR---DKYCCPICSKS 198 (233)
Q Consensus 182 ~~~~~~---~~~~CPiCrks 198 (233)
..-+.. ....||.|...
T Consensus 85 ~ppl~~~P~g~W~C~~C~~c 104 (111)
T 2ysm_A 85 QPVMKSVPTNGWKCKNCRIC 104 (111)
T ss_dssp SSCCSSCCSSCCCCHHHHCC
T ss_pred CCccccCCCCCcCCcCCcCc
Confidence 865432 45778887653
No 80
>2jne_A Hypothetical protein YFGJ; zinc fingers, two zinc, structural genomics, PSI-2, protein structure initiative; NMR {Escherichia coli} SCOP: g.41.18.1
Probab=85.98 E-value=0.32 Score=37.17 Aligned_cols=9 Identities=33% Similarity=0.852 Sum_probs=4.1
Q ss_pred ceeecCccc
Q 026787 89 GEYFCDICK 97 (233)
Q Consensus 89 ~~Y~C~~C~ 97 (233)
+.|||..|+
T Consensus 80 vdYFC~~ch 88 (101)
T 2jne_A 80 VDYFCQHGH 88 (101)
T ss_dssp EEEEETTTT
T ss_pred cchhhccCC
Confidence 344444443
No 81
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=85.32 E-value=0.19 Score=38.39 Aligned_cols=76 Identities=25% Similarity=0.507 Sum_probs=42.3
Q ss_pred CCccceeeccccCcccccc-c-----------cccceeecCCCCCCCcchhhhhcccCCceeEeccCCccChhhHHHHhc
Q 026787 119 GGRENYFHCKRCGSCYSTS-L-----------RNNHLCIENSMHHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIK 186 (233)
Q Consensus 119 G~~~~~fHC~~C~~C~s~~-l-----------~~~H~C~e~~~~~~CpICle~lf~s~~~v~~LpCGH~~H~~C~~~~~~ 186 (233)
|.+++...|+.|+.-+-.+ | .++=.|.+= ..|.||.+.=.+..+-+.--.|...||..|+..-|.
T Consensus 21 g~~~~Ll~C~~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C---~~C~vC~~~~~~~~~ll~Cd~C~~~yH~~Cl~p~l~ 97 (112)
T 3v43_A 21 KKPEELISCADCGNSGHPSCLKFSPELTVRVKALRWQCIEC---KTCSSCRDQGKNADNMLFCDSCDRGFHMECCDPPLT 97 (112)
T ss_dssp SCCCCCEECTTTCCEECHHHHTCCHHHHHHHHTSCCCCTTT---CCBTTTCCCCCTTCCCEECTTTCCEECGGGCSSCCS
T ss_pred CCchhceEhhhcCCCCCCchhcCCHHHHHHhhccccccccC---CccccccCcCCCccceEEcCCCCCeeecccCCCCCC
Confidence 3456788888887544322 0 112223221 157888764111111111125889999999976543
Q ss_pred c---CCCcCCCCCc
Q 026787 187 R---DKYCCPICSK 197 (233)
Q Consensus 187 ~---~~~~CPiCrk 197 (233)
. +...||.|+.
T Consensus 98 ~~P~~~W~C~~C~~ 111 (112)
T 3v43_A 98 RMPKGMWICQICRP 111 (112)
T ss_dssp SCCSSCCCCTTTSC
T ss_pred CCCCCCeECCCCCC
Confidence 2 4688999975
No 82
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=81.86 E-value=0.093 Score=40.36 Aligned_cols=85 Identities=22% Similarity=0.548 Sum_probs=47.7
Q ss_pred CCCcceeCC--------ccceeeccccCc-----cccccc-------cccceeecCCCCCCCcchhhhhcccCCceeEec
Q 026787 112 DCGICRIGG--------RENYFHCKRCGS-----CYSTSL-------RNNHLCIENSMHHHCPICYEYLFDSLRNTTVMK 171 (233)
Q Consensus 112 ~CgiCR~G~--------~~~~fHC~~C~~-----C~s~~l-------~~~H~C~e~~~~~~CpICle~lf~s~~~v~~Lp 171 (233)
.|+||..|+ +++...|+.|+. |+...+ .+.=.|.+= ..|.||...- +...-+.--.
T Consensus 3 ~C~~C~~~~~~n~k~g~~~~Li~C~~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C---~~C~~C~~~~-~~~~ll~Cd~ 78 (114)
T 2kwj_A 3 YCDFCLGGSNMNKKSGRPEELVSCADCGRSGHPTCLQFTLNMTEAVKTYKWQCIEC---KSCILCGTSE-NDDQLLFCDD 78 (114)
T ss_dssp CCSSSCCBTTBCTTTCCCCCCEECSSSCCEECTTTTTCCHHHHHHHHHTTCCCGGG---CCCTTTTCCT-TTTTEEECSS
T ss_pred cCccCCCCccccccCCCCCCCeEeCCCCCccchhhCCChhhhhhccCCCccCcccc---CccCcccccC-CCCceEEcCC
Confidence 456665443 467888888875 444321 122233321 1578887642 1111111226
Q ss_pred cCCccChhhHHHHhc---cCCCcCCCCCcccc
Q 026787 172 CGHTMHCECYHEMIK---RDKYCCPICSKSVI 200 (233)
Q Consensus 172 CGH~~H~~C~~~~~~---~~~~~CPiCrksi~ 200 (233)
|...||..|+..=|. .+...||.|...+.
T Consensus 79 C~~~yH~~Cl~ppl~~~P~g~W~C~~C~~~~~ 110 (114)
T 2kwj_A 79 CDRGYHMYCLNPPVAEPPEGSWSCHLCWELLK 110 (114)
T ss_dssp SCCEEETTTSSSCCSSCCSSCCCCHHHHHHHH
T ss_pred CCccccccccCCCccCCCCCCeECccccchhh
Confidence 889999999985333 24677888865544
No 83
>4bbq_A Lysine-specific demethylase 2A; oxidoreductase, ubiquitin, ligase, ubiquitination, demethyla ZF-CXXC DNA binding domain, CPG island, chromatin; 2.24A {Homo sapiens}
Probab=76.47 E-value=0.6 Score=35.40 Aligned_cols=27 Identities=22% Similarity=0.560 Sum_probs=19.4
Q ss_pred ccCCccChhhHHHHhcc-------CCCcCCCCCc
Q 026787 171 KCGHTMHCECYHEMIKR-------DKYCCPICSK 197 (233)
Q Consensus 171 pCGH~~H~~C~~~~~~~-------~~~~CPiCrk 197 (233)
-|..++|..|....... ..+.||.|+.
T Consensus 80 ~C~~~~H~~C~~~~~~~~~~~~~~~~~~C~~C~~ 113 (117)
T 4bbq_A 80 ICNEIVHPGCLQMDGEGLLNEELPNCWECPKCYQ 113 (117)
T ss_dssp TTCCEECGGGCCSCCCCEECSSSSSEEECTTTC-
T ss_pred ecCCeEECCCCCCCccccccccCCCCeECCCCcC
Confidence 58999999998754321 2488999975
No 84
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=73.24 E-value=0.38 Score=32.90 Aligned_cols=50 Identities=22% Similarity=0.351 Sum_probs=32.9
Q ss_pred CCCCCcchhhhhcccCCceeEeccCCccChhhHHHHhc----cCCCcCCCCCcc
Q 026787 149 MHHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIK----RDKYCCPICSKS 198 (233)
Q Consensus 149 ~~~~CpICle~lf~s~~~v~~LpCGH~~H~~C~~~~~~----~~~~~CPiCrks 198 (233)
....||||.....+...-+.--.|.-+||..|+..-.. ...|.||.|+..
T Consensus 5 e~~~C~~C~~~~~~~~~mI~Cd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~k 58 (64)
T 1we9_A 5 SSGQCGACGESYAADEFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPSCSNK 58 (64)
T ss_dssp SCCCCSSSCCCCCSSSCEEECSSSCCEEETTTTTCCTTGGGGCSSCCCHHHHTT
T ss_pred CCCCCCCCCCccCCCCCEEEccCCCCCCCccccCcChhHhcCCCcEECCCCcCc
Confidence 45569999877433323333346899999999864322 146889999753
No 85
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=73.13 E-value=3.3 Score=31.04 Aligned_cols=69 Identities=25% Similarity=0.701 Sum_probs=34.8
Q ss_pred ceeecCCCCcccccc--CcCCCCCCCcceeecCcccccc-CCCCcCeeccCCCC---cceeCC-ccceeeccccCccccc
Q 026787 64 KQVICSVCDTEQPVA--QVCTNCGVNMGEYFCDICKFYD-DDIEKGQFHCDDCG---ICRIGG-RENYFHCKRCGSCYST 136 (233)
Q Consensus 64 ~~v~C~~C~~~q~~~--~~C~~Cg~~f~~Y~C~~C~l~d-~~~~k~~yHC~~Cg---iCR~G~-~~~~fHC~~C~~C~s~ 136 (233)
...+|..|+...... ..|..|+..|=. .|--.. ....+..+.|+.|. +|+.++ .+....|+.|+.-+-+
T Consensus 6 ~~~~C~~C~~~g~~~~ll~C~~C~~~~H~----~Cl~~~~~~~~~~~W~C~~C~~C~~C~~~~~~~~ll~Cd~C~~~yH~ 81 (111)
T 2ysm_A 6 SGANCAVCDSPGDLLDQFFCTTCGQHYHG----MCLDIAVTPLKRAGWQCPECKVCQNCKQSGEDSKMLVCDTCDKGYHT 81 (111)
T ss_dssp CCSCBTTTCCCCCTTTSEECSSSCCEECT----TTTTCCCCTTTSTTCCCTTTCCCTTTCCCSCCTTEEECSSSCCEEEG
T ss_pred CCCCCcCCCCCCCCcCCeECCCCCCCcCh----HHhCCccccccccCccCCcCCcccccCccCCCCCeeECCCCCcHHhH
Confidence 455666665543321 356666554321 121111 11123456666654 555554 2468899998865544
No 86
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=72.77 E-value=4.2 Score=30.56 Aligned_cols=56 Identities=20% Similarity=0.434 Sum_probs=42.4
Q ss_pred ecCCCCCCCcchhhhhcccCCceeE---eccCCccChhhHHHHhccCCCcCCCCCcccc
Q 026787 145 IENSMHHHCPICYEYLFDSLRNTTV---MKCGHTMHCECYHEMIKRDKYCCPICSKSVI 200 (233)
Q Consensus 145 ~e~~~~~~CpICle~lf~s~~~v~~---LpCGH~~H~~C~~~~~~~~~~~CPiCrksi~ 200 (233)
+.....+.|.||.+++-.+.+.-.+ .-|+=.+.+.|++--.+..+..||-|+...-
T Consensus 11 ~~~~~~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErkeG~q~CpqCktrYk 69 (93)
T 1weo_A 11 LKNLDGQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREGTQNCPQCKTRYK 69 (93)
T ss_dssp CSCCSSCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHTSCSSCTTTCCCCC
T ss_pred ccccCCCccccccCccccCCCCCEEEeeeccCChhhHHHHHHHHhccCccccccCCccc
Confidence 4455567899999996444333222 3589999999999998888999999986653
No 87
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=68.78 E-value=4 Score=28.39 Aligned_cols=47 Identities=17% Similarity=0.369 Sum_probs=31.9
Q ss_pred CCCCCCcchhhhhcccCCceeEeccCCccChhhHHHHhcc---CCCcCCCCCcc
Q 026787 148 SMHHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKR---DKYCCPICSKS 198 (233)
Q Consensus 148 ~~~~~CpICle~lf~s~~~v~~LpCGH~~H~~C~~~~~~~---~~~~CPiCrks 198 (233)
+....|.||.+. .+-+.-=.|...||..|++.-|.. +...||.|+..
T Consensus 10 ~~~~~C~vC~~~----~~ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~ 59 (66)
T 2lri_C 10 APGARCGVCGDG----TDVLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSGD 59 (66)
T ss_dssp CTTCCCTTTSCC----TTCEECSSSCCEECHHHHCTTTCCCCSSSCCCTTTTTC
T ss_pred CCCCCcCCCCCC----CeEEECCCCCCceecccCCCccCcCCCCCEECccccCC
Confidence 344569999753 222222258899999999876653 46899999753
No 88
>1zfo_A LAsp-1; LIM domain, zinc-finger, metal-binding protein; NMR {Sus scrofa} SCOP: g.39.1.4
Probab=66.14 E-value=1.7 Score=25.80 Aligned_cols=30 Identities=17% Similarity=0.505 Sum_probs=16.9
Q ss_pred CCCCCcchhhhhcccCCceeEeccCCccChhhH
Q 026787 149 MHHHCPICYEYLFDSLRNTTVMKCGHTMHCECY 181 (233)
Q Consensus 149 ~~~~CpICle~lf~s~~~v~~LpCGH~~H~~C~ 181 (233)
+...||.|....+.. +.+. .=|..+|+.||
T Consensus 2 m~~~C~~C~k~Vy~~-Ek~~--~~g~~~Hk~CF 31 (31)
T 1zfo_A 2 MNPNCARCGKIVYPT-EKVN--CLDKFWHKACF 31 (31)
T ss_dssp CCCBCSSSCSBCCGG-GCCC--SSSSCCCGGGC
T ss_pred CCCcCCccCCEEecc-eeEE--ECCeEecccCC
Confidence 345677777765543 2222 23677777774
No 89
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=64.83 E-value=3.1 Score=26.88 Aligned_cols=46 Identities=17% Similarity=0.533 Sum_probs=28.2
Q ss_pred CCcchhhhhcccCCceeEeccCCccChhhHHHHhc---cCCCcCCCCCcc
Q 026787 152 HCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIK---RDKYCCPICSKS 198 (233)
Q Consensus 152 ~CpICle~lf~s~~~v~~LpCGH~~H~~C~~~~~~---~~~~~CPiCrks 198 (233)
.|.||... .+..+-+.--.|.-.||..|++.=+. .+...||.|.++
T Consensus 2 ~C~vC~~~-~~~~~ll~Cd~C~~~~H~~Cl~p~l~~~P~g~W~C~~C~~~ 50 (51)
T 1f62_A 2 RCKVCRKK-GEDDKLILCDECNKAFHLFCLRPALYEVPDGEWQCPACQPA 50 (51)
T ss_dssp CCTTTCCS-SCCSCCEECTTTCCEECHHHHCTTCCSCCSSCCSCTTTSCC
T ss_pred CCCCCCCC-CCCCCEEECCCCChhhCcccCCCCcCCCCCCcEECcCcccc
Confidence 47777754 11111122226889999999975333 246789999764
No 90
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=61.79 E-value=2.7 Score=35.01 Aligned_cols=51 Identities=24% Similarity=0.556 Sum_probs=33.2
Q ss_pred CCCcchhhhhcccCCceeEe---ccCCccChhhHHHH------hc----cCCCcCCCCCccccc
Q 026787 151 HHCPICYEYLFDSLRNTTVM---KCGHTMHCECYHEM------IK----RDKYCCPICSKSVID 201 (233)
Q Consensus 151 ~~CpICle~lf~s~~~v~~L---pCGH~~H~~C~~~~------~~----~~~~~CPiCrksi~d 201 (233)
..||||.....++......+ .|..+||..|..-- +. ...|.||.|+..-..
T Consensus 3 ~~CpiC~k~Y~~~~~~~~MIqCd~C~~W~H~~Cvgi~~~~~e~~~~~pe~~~y~Cp~C~~~~~~ 66 (183)
T 3lqh_A 3 NFCPLCDKCYDDDDYESKMMQCGKCDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCTERHPA 66 (183)
T ss_dssp CBCTTTCCBCTTCCTTCCEEECTTTCCEEEGGGSSCCHHHHHHHHHSHHHHCCCCTTTCCSSSC
T ss_pred CcCCCCcCccCCcccCCCeEECCCCCcccchhccccCHHHHHHhhcCCCCCeeECcCCCCCCCH
Confidence 46999987744432222233 57899999998431 11 026999999987664
No 91
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=60.50 E-value=1.7 Score=30.44 Aligned_cols=49 Identities=22% Similarity=0.451 Sum_probs=31.5
Q ss_pred CCCcchhhhhcccCCceeEeccCCccChhhHHHHhcc---CCCcCCCCCcccc
Q 026787 151 HHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKR---DKYCCPICSKSVI 200 (233)
Q Consensus 151 ~~CpICle~lf~s~~~v~~LpCGH~~H~~C~~~~~~~---~~~~CPiCrksi~ 200 (233)
..|+||...- +...-+.-=.|.-+||..|+..-+.. ..+.||.|...+.
T Consensus 19 ~~C~~C~~~~-~~~~mi~CD~C~~wfH~~Cv~~~~~~~~~~~w~C~~C~~~~~ 70 (75)
T 2k16_A 19 WICPGCNKPD-DGSPMIGCDDCDDWYHWPCVGIMAAPPEEMQWFCPKCANKIK 70 (75)
T ss_dssp ECBTTTTBCC-SSCCEEECSSSSSEEEHHHHTCSSCCCSSSCCCCTTTHHHHC
T ss_pred cCCCCCCCCC-CCCCEEEcCCCCcccccccCCCCccCCCCCCEEChhccCchh
Confidence 3599998752 21111111258899999999754432 4688999986543
No 92
>2dkt_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.89.1.1 g.93.1.1 PDB: 2k2c_A
Probab=60.05 E-value=2.8 Score=33.88 Aligned_cols=32 Identities=25% Similarity=0.716 Sum_probs=22.3
Q ss_pred ceeecCccccccCCCCcCeeccCCCCcceeCC
Q 026787 89 GEYFCDICKFYDDDIEKGQFHCDDCGICRIGG 120 (233)
Q Consensus 89 ~~Y~C~~C~l~d~~~~k~~yHC~~CgiCR~G~ 120 (233)
..|-|+.|.+=--...++-|||+.||+|---.
T Consensus 97 ~~yHC~~CgiCR~G~~~~ffHC~~C~~C~s~~ 128 (143)
T 2dkt_A 97 RQYHCESCGICRIGPKEDFFHCLKCNLCLTTN 128 (143)
T ss_dssp SEEEETTTTEEEESCGGGEEEETTTTEEEEGG
T ss_pred ceecCCCCCceeccCCcCcEECCcCCeeeccc
Confidence 44666665555434578999999999996543
No 93
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=59.20 E-value=10 Score=29.97 Aligned_cols=56 Identities=16% Similarity=0.345 Sum_probs=36.7
Q ss_pred cceeecCCCCCCCcchhhhhcccCCceeEeccCCccChhhHHHHh----------ccCCCcCCCCCcccc
Q 026787 141 NHLCIENSMHHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMI----------KRDKYCCPICSKSVI 200 (233)
Q Consensus 141 ~H~C~e~~~~~~CpICle~lf~s~~~v~~LpCGH~~H~~C~~~~~----------~~~~~~CPiCrksi~ 200 (233)
.-.-.+...+..|.||.+. .+-+--=.|-.+||..|+...+ ......|++|+-+-+
T Consensus 48 ~~~~d~Dg~~~~C~vC~dG----G~LlcCd~Cpr~Fc~~Cl~~~lg~~~l~~i~~~~~~W~C~~C~~~pl 113 (129)
T 3ql9_A 48 DISRDSDGMDEQCRWCAEG----GNLICCDFCHNAFCKKCILRNLGRRELSTIMDENNQWYCYICHPEPL 113 (129)
T ss_dssp CCCBCTTSCBSSCTTTCCC----SEEEECSSSSCEEEHHHHHHHTCHHHHHHHTCTTSCCCCTTTCCGGG
T ss_pred ccccCCCCCCCcCeecCCC----CeeEecCCCchhhhHHHhCCCcchhHHHHhccCCCCeEcCCcCCHHH
Confidence 3334456777889999974 1111111578999999999652 235689999976543
No 94
>1g47_A Pinch protein; LIM domain, Zn finger, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=59.12 E-value=4.9 Score=27.40 Aligned_cols=44 Identities=16% Similarity=0.363 Sum_probs=29.7
Q ss_pred CCCCCCcchhhhhcccCCceeEeccCCccChhhHHHHhccCCCcCCCCCccccch
Q 026787 148 SMHHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVIDM 202 (233)
Q Consensus 148 ~~~~~CpICle~lf~s~~~v~~LpCGH~~H~~C~~~~~~~~~~~CPiCrksi~dm 202 (233)
.....|+-|.+.+......+.. =|..+|..|| +|-.|++++.+-
T Consensus 9 ~~~~~C~~C~~~I~~~~~~~~a--~~~~~H~~CF---------~C~~C~~~L~~~ 52 (77)
T 1g47_A 9 LASATCERCKGGFAPAEKIVNS--NGELYHEQCF---------VCAQCFQQFPEG 52 (77)
T ss_dssp CCCCBCSSSCCBCCSTTTCEEE--TTEEECTTTC---------CCTTTCCCCGGG
T ss_pred CCCCCchhcCCccCCCceEEEe--CccEeccccC---------eECCCCCCCCCC
Confidence 3456799999987643222223 3778888775 577888888653
No 95
>2egq_A FHL1 protein; LIM domain, four and A half LIM domains protein 1, skeletal muscle LIM- protein 1, SLIM 1, structural genomics NPPSFA; NMR {Homo sapiens}
Probab=58.73 E-value=3.7 Score=28.12 Aligned_cols=41 Identities=20% Similarity=0.469 Sum_probs=28.3
Q ss_pred CCCCcchhhhhcc---cCCceeEeccCCccChhhHHHHhccCCCcCCCCCccccc
Q 026787 150 HHHCPICYEYLFD---SLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVID 201 (233)
Q Consensus 150 ~~~CpICle~lf~---s~~~v~~LpCGH~~H~~C~~~~~~~~~~~CPiCrksi~d 201 (233)
...|+-|.+.+.. ....+..+ |..+|..|| +|-.|++++.+
T Consensus 15 ~~~C~~C~~~I~~~g~~~~~~~a~--~~~~H~~CF---------~C~~C~~~L~~ 58 (77)
T 2egq_A 15 AKKCAGCKNPITGFGKGSSVVAYE--GQSWHDYCF---------HCKKCSVNLAN 58 (77)
T ss_dssp CCCCSSSCCCCCCCSSCCCEEEET--TEEEETTTC---------BCSSSCCBCTT
T ss_pred CccCcccCCcccCCCCCceeEEEC--cceeCcccC---------EehhcCCCCCC
Confidence 4678999988764 22333333 778888775 68889988864
No 96
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=58.00 E-value=5.5 Score=26.80 Aligned_cols=40 Identities=18% Similarity=0.453 Sum_probs=25.8
Q ss_pred CCCCcchhhhhcccCCceeEeccCCccChhhHHHHhccCCCcCCCCCcccc
Q 026787 150 HHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVI 200 (233)
Q Consensus 150 ~~~CpICle~lf~s~~~v~~LpCGH~~H~~C~~~~~~~~~~~CPiCrksi~ 200 (233)
...|+.|.+.+......+.. =|..+|..|| +|-.|+++|.
T Consensus 5 ~~~C~~C~~~I~~~~~~~~a--~~~~~H~~CF---------~C~~C~~~L~ 44 (72)
T 1x61_A 5 SSGCGGCGEDVVGDGAGVVA--LDRVFHVGCF---------VCSTCRAQLR 44 (72)
T ss_dssp CCCCSSSCSCCCSSSCCEEC--SSSEECTTTC---------BCSSSCCBCT
T ss_pred CCCCccCCCccCCCceEEEE--CCCeEcccCC---------cccccCCcCC
Confidence 45688888876543222333 3778888765 5777888874
No 97
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=57.89 E-value=8.6 Score=28.60 Aligned_cols=44 Identities=18% Similarity=0.595 Sum_probs=30.9
Q ss_pred CCCCCCcchhhhhcccCCceeEec---cCCccChhhHHHH------------hc---cCCCcCCCCC
Q 026787 148 SMHHHCPICYEYLFDSLRNTTVMK---CGHTMHCECYHEM------------IK---RDKYCCPICS 196 (233)
Q Consensus 148 ~~~~~CpICle~lf~s~~~v~~Lp---CGH~~H~~C~~~~------------~~---~~~~~CPiCr 196 (233)
..+..|+||-- +++ -..+| ||=.||..|+.+. ++ ....+||-|.
T Consensus 13 ~~D~~C~VC~~--~t~---~~l~pCRvC~RvfH~~CL~r~gy~~~~~a~e~~l~A~T~~GWSC~~Ce 74 (89)
T 1wil_A 13 VNDEMCDVCEV--WTA---ESLFPCRVCTRVFHDGCLRRMGYIQGDSAAEVTEMAHTETGWSCHYCD 74 (89)
T ss_dssp CCSCCCTTTCC--CCS---SCCSSCSSSSSCCCHHHHHHHTSCCCCCCCSCSCCCSSSSSCCCTTTC
T ss_pred CCCcccCcccc--ccc---cceeccccccccccHhhcccccccccHHHHHHHHccCCCCCccccccc
Confidence 45778999974 333 22455 6999999999997 21 1357899994
No 98
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=55.73 E-value=5.1 Score=27.17 Aligned_cols=49 Identities=22% Similarity=0.537 Sum_probs=32.7
Q ss_pred cCCCCCCCcchhhhhcccCCceeEeccCCccChhhHHHHhc---cCCCcCCCCCcc
Q 026787 146 ENSMHHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIK---RDKYCCPICSKS 198 (233)
Q Consensus 146 e~~~~~~CpICle~lf~s~~~v~~LpCGH~~H~~C~~~~~~---~~~~~CPiCrks 198 (233)
+...+..|.||.+. .+-+.--.|.-.||..|+..-+. .+...||.|.+.
T Consensus 7 ~~~~~~~C~vC~~~----g~ll~CD~C~~~fH~~Cl~p~l~~~p~g~W~C~~C~~~ 58 (61)
T 2l5u_A 7 ETDHQDYCEVCQQG----GEIILCDTCPRAYHMVCLDPDMEKAPEGKWSCPHCEKE 58 (61)
T ss_dssp SSCCCSSCTTTSCC----SSEEECSSSSCEEEHHHHCTTCCSCCCSSCCCTTGGGG
T ss_pred cCCCCCCCccCCCC----CcEEECCCCChhhhhhccCCCCCCCCCCceECcccccc
Confidence 34556779999863 12222225788999999987432 357889999753
No 99
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=54.21 E-value=5.2 Score=27.68 Aligned_cols=41 Identities=20% Similarity=0.559 Sum_probs=26.6
Q ss_pred CCCCcchhhhhcccCCceeEeccCCccChhhHHHHhccCCCcCCCCCccccc
Q 026787 150 HHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVID 201 (233)
Q Consensus 150 ~~~CpICle~lf~s~~~v~~LpCGH~~H~~C~~~~~~~~~~~CPiCrksi~d 201 (233)
...|+.|.+.+......+.. =|..+|..|| +|-.|+++|.+
T Consensus 15 ~~~C~~C~~~I~~~~~~~~a--~~~~~H~~CF---------~C~~C~~~L~~ 55 (82)
T 1x63_A 15 SPKCKGCFKAIVAGDQNVEY--KGTVWHKDCF---------TCSNCKQVIGT 55 (82)
T ss_dssp SCBCSSSCCBCCSSSCEEEC--SSCEEETTTC---------CCSSSCCCCTT
T ss_pred CCcCccCCcccccCceEEEE--CccccccccC---------chhhCCCccCC
Confidence 45788888887543222322 3778887765 57778888764
No 100
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=51.96 E-value=8.4 Score=25.93 Aligned_cols=41 Identities=20% Similarity=0.434 Sum_probs=27.8
Q ss_pred CCCCcchhhhhcc--cCCceeEeccCCccChhhHHHHhccCCCcCCCCCccccc
Q 026787 150 HHHCPICYEYLFD--SLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVID 201 (233)
Q Consensus 150 ~~~CpICle~lf~--s~~~v~~LpCGH~~H~~C~~~~~~~~~~~CPiCrksi~d 201 (233)
...|+-|.+.+.. +...+ ..=|..+|..|| +|-.|+++|.+
T Consensus 5 ~~~C~~C~~~I~~~~~~~~~--~a~~~~wH~~CF---------~C~~C~~~L~~ 47 (72)
T 1x4l_A 5 SSGCAGCTNPISGLGGTKYI--SFEERQWHNDCF---------NCKKCSLSLVG 47 (72)
T ss_dssp SCSBTTTTBCCCCSSSCSCE--ECSSCEECTTTC---------BCSSSCCBCTT
T ss_pred CCCCcCCCccccCCCCcceE--EECCcccCcccC---------EeccCCCcCCC
Confidence 4578889888764 22222 234788998775 67889988863
No 101
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=51.27 E-value=3.9 Score=28.06 Aligned_cols=37 Identities=27% Similarity=0.704 Sum_probs=17.8
Q ss_pred CcchhhhhcccCCceeEeccCCccChhhHHHHhccCCCcCCCCCccccc
Q 026787 153 CPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVID 201 (233)
Q Consensus 153 CpICle~lf~s~~~v~~LpCGH~~H~~C~~~~~~~~~~~CPiCrksi~d 201 (233)
|+.|.+.+... +.+..+ |..+|..|| +|..|++++.+
T Consensus 3 C~~C~~~I~~~-~~v~a~--~~~~H~~CF---------~C~~C~~~L~~ 39 (76)
T 1iml_A 3 CPKCDKEVYFA-ERVTSL--GKDWHRPCL---------KCEKCGKTLTS 39 (76)
T ss_dssp CTTTSSBCCGG-GEEEET--TEEEETTTC---------BCTTTCCBCCT
T ss_pred CCCCCCEEECc-eEEEEC--CccccCCCC---------CccccCccCCC
Confidence 55555554422 222222 556665543 45556665543
No 102
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=50.37 E-value=8 Score=23.79 Aligned_cols=16 Identities=31% Similarity=0.700 Sum_probs=12.3
Q ss_pred CCcCCCCCccccchhH
Q 026787 189 KYCCPICSKSVIDMSR 204 (233)
Q Consensus 189 ~~~CPiCrksi~dm~~ 204 (233)
.+.||+|.|.+.+-..
T Consensus 5 GFiCP~C~~~l~s~~~ 20 (34)
T 3mjh_B 5 GFICPQCMKSLGSADE 20 (34)
T ss_dssp EEECTTTCCEESSHHH
T ss_pred ccCCcHHHHHcCCHHH
Confidence 4789999999886543
No 103
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=49.74 E-value=9 Score=27.06 Aligned_cols=49 Identities=20% Similarity=0.298 Sum_probs=30.9
Q ss_pred CCCcchhhhhcccCCceeEeccCCccChhhHHHHhc----cCCCcCCCCCcccc
Q 026787 151 HHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIK----RDKYCCPICSKSVI 200 (233)
Q Consensus 151 ~~CpICle~lf~s~~~v~~LpCGH~~H~~C~~~~~~----~~~~~CPiCrksi~ 200 (233)
..| ||.....+...-|.--.|.-+||..|+.--.. ...+.||.|+++..
T Consensus 13 ~~C-~C~~~~d~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~~~ 65 (79)
T 1wep_A 13 VYC-LCRQPYNVNHFMIECGLCQDWFHGSCVGIEEENAVDIDIYHCPDCEAVFG 65 (79)
T ss_dssp CCS-TTSCSCCSSSCEEEBTTTCCEEEHHHHTCCHHHHTTCSBBCCTTTTTTSC
T ss_pred cEE-EcCCccCCCCceEEcCCCCCcEEeeecCcccccccCCCeEECCCcccccC
Confidence 345 78775322323333346899999999953221 24799999997653
No 104
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=49.47 E-value=5.7 Score=26.65 Aligned_cols=41 Identities=24% Similarity=0.542 Sum_probs=26.4
Q ss_pred CCCCcchhhhhcccCCceeEeccCCccChhhHHHHhccCCCcCCCCCccccc
Q 026787 150 HHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVID 201 (233)
Q Consensus 150 ~~~CpICle~lf~s~~~v~~LpCGH~~H~~C~~~~~~~~~~~CPiCrksi~d 201 (233)
...|+.|.+.+..... .+..=|..+|..|| +|-.|++++.+
T Consensus 5 ~~~C~~C~~~I~~~~~--~~~a~~~~~H~~CF---------~C~~C~~~L~~ 45 (72)
T 1wyh_A 5 SSGCSACGETVMPGSR--KLEYGGQTWHEHCF---------LCSGCEQPLGS 45 (72)
T ss_dssp CCBCSSSCCBCCSSSC--EECSTTCCEETTTC---------BCTTTCCBTTT
T ss_pred CCCCccCCCccccCcc--EEEECccccCcccC---------eECCCCCcCCC
Confidence 3568888887654322 22234788888765 57788888764
No 105
>2jrp_A Putative cytoplasmic protein; two-zinc binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium LT2}
Probab=49.07 E-value=7.3 Score=28.55 Aligned_cols=15 Identities=27% Similarity=0.569 Sum_probs=8.7
Q ss_pred cceeeccccCcccccc
Q 026787 122 ENYFHCKRCGSCYSTS 137 (233)
Q Consensus 122 ~~~fHC~~C~~C~s~~ 137 (233)
++|| |..||.=+|++
T Consensus 50 ~~yF-C~~C~~LiSkk 64 (81)
T 2jrp_A 50 VDYF-CQNGHGLISKK 64 (81)
T ss_dssp EEEC-CTTTTCCCCTT
T ss_pred cCee-eccCCCEeecc
Confidence 4444 66666666654
No 106
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=47.58 E-value=6.1 Score=26.75 Aligned_cols=49 Identities=16% Similarity=0.475 Sum_probs=32.0
Q ss_pred CCCCCCCcchhhhhcccCCceeEeccCCccChhhHHHHhc---cCCCcCCCCCccc
Q 026787 147 NSMHHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIK---RDKYCCPICSKSV 199 (233)
Q Consensus 147 ~~~~~~CpICle~lf~s~~~v~~LpCGH~~H~~C~~~~~~---~~~~~CPiCrksi 199 (233)
...+..|.||.+. .+-+.--.|.-.||..|+..-+. .....||.|....
T Consensus 6 d~~~~~C~vC~~~----g~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~~ 57 (61)
T 1mm2_A 6 DHHMEFCRVCKDG----GELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCTCPA 57 (61)
T ss_dssp CSSCSSCTTTCCC----SSCBCCSSSCCCBCSSSSSSCCSSCCSSCCCCTTTTTTC
T ss_pred cCCCCcCCCCCCC----CCEEEcCCCCHHHcccccCCCcCcCCCCccCChhhcCch
Confidence 3446678899753 12222225889999999985333 2467899998654
No 107
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=46.56 E-value=7.1 Score=26.64 Aligned_cols=40 Identities=25% Similarity=0.593 Sum_probs=28.0
Q ss_pred CCCCcchhhhhcccCCceeEeccCCccChhhHHHHhccCCCcCCCCCccccc
Q 026787 150 HHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVID 201 (233)
Q Consensus 150 ~~~CpICle~lf~s~~~v~~LpCGH~~H~~C~~~~~~~~~~~CPiCrksi~d 201 (233)
...|+.|.+.+... +.+. .=|..+|..|| +|..|+++|.+
T Consensus 9 ~~~C~~C~~~I~~~-~~v~--a~~~~~H~~CF---------~C~~C~~~L~~ 48 (76)
T 2cu8_A 9 ASKCPKCDKTVYFA-EKVS--SLGKDWHKFCL---------KCERCSKTLTP 48 (76)
T ss_dssp CCBCTTTCCBCCTT-TEEE--ETTEEEETTTC---------BCSSSCCBCCT
T ss_pred CCCCcCCCCEeECC-eEEE--ECCeEeeCCCC---------CCCCCCCccCC
Confidence 45799999987643 2333 34788887765 68889988874
No 108
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=46.50 E-value=8.5 Score=27.48 Aligned_cols=65 Identities=20% Similarity=0.565 Sum_probs=37.0
Q ss_pred ccceeeccccCccccccccccceeecCCCCCCCcchhhhhcccCCceeE-eccCCccChhhHHHHhc---cC-CCcCCCC
Q 026787 121 RENYFHCKRCGSCYSTSLRNNHLCIENSMHHHCPICYEYLFDSLRNTTV-MKCGHTMHCECYHEMIK---RD-KYCCPIC 195 (233)
Q Consensus 121 ~~~~fHC~~C~~C~s~~l~~~H~C~e~~~~~~CpICle~lf~s~~~v~~-LpCGH~~H~~C~~~~~~---~~-~~~CPiC 195 (233)
+.++..|+.|+. ...=.|. +..|.||... .+. ..+.. =.|.-.||..|+..=|. .+ ...||.|
T Consensus 7 ~~~~~~c~~C~~------~~~w~C~----~c~C~vC~~~-~~~-~~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C 74 (77)
T 2e6s_A 7 GRNDTECDLCGG------DPEKKCH----SCSCRVCGGK-HEP-NMQLLCDECNVAYHIYCLNPPLDKVPEEEYWYCPSC 74 (77)
T ss_dssp CCCCCCCTTTCS------CSSSCCS----SSSCSSSCCC-CCS-TTEEECSSSCCEEETTSSSSCCSSCCCSSCCCCTTT
T ss_pred ccCCccChhhcC------CCCeECC----CCCCcCcCCc-CCC-CCEEEcCCCCccccccccCCCccCCCCCCCcCCcCc
Confidence 346666666654 1223343 2368888853 111 11211 15789999999985333 23 5789988
Q ss_pred Cc
Q 026787 196 SK 197 (233)
Q Consensus 196 rk 197 (233)
..
T Consensus 75 ~~ 76 (77)
T 2e6s_A 75 KT 76 (77)
T ss_dssp CC
T ss_pred cC
Confidence 64
No 109
>2jvx_A NF-kappa-B essential modulator; CCHC classical zinc finger, NEMO zinc finger, beta-BETA- alpha fold, coiled coil, cytoplasm, disease mutation; NMR {Synthetic} PDB: 2jvy_A
Probab=46.45 E-value=6.6 Score=23.17 Aligned_cols=16 Identities=38% Similarity=1.055 Sum_probs=13.5
Q ss_pred CCcCCCCCccccchhH
Q 026787 189 KYCCPICSKSVIDMSR 204 (233)
Q Consensus 189 ~~~CPiCrksi~dm~~ 204 (233)
.++||+|+..+-|+..
T Consensus 3 k~~CpvCk~q~Pd~kt 18 (28)
T 2jvx_A 3 DFCCPKCQYQAPDMDT 18 (28)
T ss_dssp CEECTTSSCEESSHHH
T ss_pred cccCccccccCcChHH
Confidence 5789999999988665
No 110
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A*
Probab=46.40 E-value=3.7 Score=26.94 Aligned_cols=45 Identities=18% Similarity=0.317 Sum_probs=27.9
Q ss_pred CCcchhhhhcccCCceeEe-ccCCccChhhHHHHhc---cCCCcCCCCC
Q 026787 152 HCPICYEYLFDSLRNTTVM-KCGHTMHCECYHEMIK---RDKYCCPICS 196 (233)
Q Consensus 152 ~CpICle~lf~s~~~v~~L-pCGH~~H~~C~~~~~~---~~~~~CPiCr 196 (233)
.|+||.....++..-+.-- .|.-.||..|+.--.. ...|.||.|+
T Consensus 4 ~cc~C~~p~~~~~~mI~Cd~~C~~WfH~~Cvgl~~~~~~~~~~~C~~C~ 52 (52)
T 2kgg_A 4 AAQNCQRPCKDKVDWVQCDGGCDEWFHQVCVGVSPEMAENEDYICINCA 52 (52)
T ss_dssp SCTTCCCCCCTTCCEEECTTTTCCEEETTTTTCCHHHHHHSCCCCSCC-
T ss_pred cCCCCcCccCCCCcEEEeCCCCCccCcccccCCCccccCCCCEECCCCC
Confidence 4778877643332223333 5888999999763211 2579999885
No 111
>2ehe_A Four and A half LIM domains 3; FHL-3, skeletal muscle LIM- protein 2, SLIM 2, FHL3, SLIM2, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=45.62 E-value=9.8 Score=26.24 Aligned_cols=41 Identities=22% Similarity=0.505 Sum_probs=26.2
Q ss_pred CCCCcchhhhhcccCCceeEeccCCccChhhHHHHhccCCCcCCCCCccccc
Q 026787 150 HHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVID 201 (233)
Q Consensus 150 ~~~CpICle~lf~s~~~v~~LpCGH~~H~~C~~~~~~~~~~~CPiCrksi~d 201 (233)
...|+.|.+.+..+...+.. =|..+|..|| +|-.|+++|.+
T Consensus 15 ~~~C~~C~~~I~~~~~~~~a--~~~~~H~~CF---------~C~~C~~~L~~ 55 (82)
T 2ehe_A 15 ANTCAECQQLIGHDSRELFY--EDRHFHEGCF---------RCCRCQRSLAD 55 (82)
T ss_dssp SCBCTTTCCBCCSSCCBCCC--SSCCCBTTTS---------BCTTTCCBCSS
T ss_pred CCcCccCCCccccCcEEEEe--CCccccccCC---------eecCCCCccCC
Confidence 34688888887632222222 3778888765 57788888763
No 112
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=44.69 E-value=8.5 Score=26.95 Aligned_cols=43 Identities=23% Similarity=0.532 Sum_probs=29.0
Q ss_pred CCCCCCcchhhhhcccCCceeEeccCCccChhhHHHHhccCCCcCCCCCccccch
Q 026787 148 SMHHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVIDM 202 (233)
Q Consensus 148 ~~~~~CpICle~lf~s~~~v~~LpCGH~~H~~C~~~~~~~~~~~CPiCrksi~dm 202 (233)
.....|+.|.+.+... +.+. .=|..+|..|| +|-.|+++|.+.
T Consensus 13 ~~~~~C~~C~~~I~~~-e~v~--a~~~~wH~~CF---------~C~~C~~~L~~~ 55 (82)
T 2co8_A 13 GAGDLCALCGEHLYVL-ERLC--VNGHFFHRSCF---------RCHTCEATLWPG 55 (82)
T ss_dssp CSSCBCSSSCCBCCTT-TBCC--BTTBCCBTTTC---------BCSSSCCBCCTT
T ss_pred CCCCCCcccCCCcccc-eEEE--ECCCeeCCCcC---------EEcCCCCCcCCC
Confidence 3456799999887543 2333 33788898875 677888887653
No 113
>2cup_A Skeletal muscle LIM-protein 1; four and half LIM domains protein 1, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 g.39.1.3
Probab=43.50 E-value=8.7 Score=27.50 Aligned_cols=44 Identities=20% Similarity=0.373 Sum_probs=28.8
Q ss_pred CCCcchhhhhcccCCceeEeccCCccChhhHHHHhccCCCcCCCCCcccc
Q 026787 151 HHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVI 200 (233)
Q Consensus 151 ~~CpICle~lf~s~~~v~~LpCGH~~H~~C~~~~~~~~~~~CPiCrksi~ 200 (233)
-.|..|...|.++ . -...=|..+.+.|+.+.+ ..+|..|++.|.
T Consensus 34 F~C~~C~~~L~~~--~-~~~~~g~~yC~~cy~~~~---~~~C~~C~~~I~ 77 (101)
T 2cup_A 34 FRCAKCLHPLANE--T-FVAKDNKILCNKCTTRED---SPKCKGCFKAIV 77 (101)
T ss_dssp CCCSSSCCCTTSS--C-CEEETTEEECHHHHTTCC---CCBCSSSCCBCC
T ss_pred CcccccCCCCCcC--e-eECcCCEEEChhHhhhhc---CCccccCCCccc
Confidence 3577787776322 1 223346777788886543 468999999887
No 114
>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*
Probab=43.48 E-value=6.5 Score=30.74 Aligned_cols=18 Identities=33% Similarity=0.621 Sum_probs=13.5
Q ss_pred CCCcCCCCCccccchhHH
Q 026787 188 DKYCCPICSKSVIDMSRT 205 (233)
Q Consensus 188 ~~~~CPiCrksi~dm~~~ 205 (233)
..+.||+|.+++...+.+
T Consensus 160 ~~~~C~~C~~~f~~~~~L 177 (190)
T 2i13_A 160 KPYKCPECGKSFSRRDAL 177 (190)
T ss_dssp CCEECTTTCCEESSHHHH
T ss_pred CCeECCCCCCccCCHHHH
Confidence 358999999998765443
No 115
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=43.45 E-value=10 Score=25.36 Aligned_cols=40 Identities=20% Similarity=0.542 Sum_probs=25.7
Q ss_pred CCCcchhhhhcccCCceeEeccCCccChhhHHHHhccCCCcCCCCCccccc
Q 026787 151 HHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVID 201 (233)
Q Consensus 151 ~~CpICle~lf~s~~~v~~LpCGH~~H~~C~~~~~~~~~~~CPiCrksi~d 201 (233)
..|+.|.+.+......+.. =|..+|..|| +|-.|++++.+
T Consensus 6 ~~C~~C~~~I~~~~~~~~a--~~~~~H~~CF---------~C~~C~~~L~~ 45 (72)
T 1x4k_A 6 SGCQECKKTIMPGTRKMEY--KGSSWHETCF---------ICHRCQQPIGT 45 (72)
T ss_dssp CCBSSSCCCCCSSSCEEEE--TTEEEETTTT---------CCSSSCCCCCS
T ss_pred CCCccCCCcccCCceEEEE--CcCeecccCC---------cccccCCccCC
Confidence 4688888876643222222 3678887765 57778887764
No 116
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=43.16 E-value=12 Score=26.16 Aligned_cols=41 Identities=22% Similarity=0.519 Sum_probs=28.6
Q ss_pred CCCCCcchhhhhcccCCceeEeccCCccChhhHHHHhccCCCcCCCCCccccc
Q 026787 149 MHHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVID 201 (233)
Q Consensus 149 ~~~~CpICle~lf~s~~~v~~LpCGH~~H~~C~~~~~~~~~~~CPiCrksi~d 201 (233)
....|+-|.+.+... +.+..+ |..+|..|| +|-.|+++|.+
T Consensus 14 ~~~~C~~C~~~I~~~-~~v~a~--~~~wH~~CF---------~C~~C~~~L~~ 54 (80)
T 2dj7_A 14 GPSHCAGCKEEIKHG-QSLLAL--DKQWHVSCF---------KCQTCSVILTG 54 (80)
T ss_dssp SCSCCTTTCCCCSSS-CCEEET--TEEECTTTC---------BCSSSCCBCSS
T ss_pred CCCCCcCcCCeeCCC-eEEEEC--CcccccccC---------CcCcCCCCcCC
Confidence 356799999887643 334443 788888765 67889888764
No 117
>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain, AN actin- interacting protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=42.97 E-value=11 Score=25.63 Aligned_cols=41 Identities=22% Similarity=0.467 Sum_probs=27.5
Q ss_pred CCCCcchhhhhcc--cCCceeEeccCCccChhhHHHHhccCCCcCCCCCccccc
Q 026787 150 HHHCPICYEYLFD--SLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVID 201 (233)
Q Consensus 150 ~~~CpICle~lf~--s~~~v~~LpCGH~~H~~C~~~~~~~~~~~CPiCrksi~d 201 (233)
...|+.|.+.+.. +.+.+. .=|..+|..|| +|-.|+++|.+
T Consensus 5 ~~~C~~C~~~I~~~g~~~~~~--a~~~~wH~~CF---------~C~~C~~~L~~ 47 (76)
T 1x68_A 5 SSGCVACSKPISGLTGAKFIC--FQDSQWHSECF---------NCGKCSVSLVG 47 (76)
T ss_dssp CCCCTTTCCCCCTTTTCCEEE--ETTEEEEGGGC---------BCTTTCCBCSS
T ss_pred CCCCccCCCcccCCCCceeEE--ECCcccCcccC---------ChhhCCCcCCC
Confidence 3568888888764 222222 34778888775 67888888763
No 118
>4ayb_P DNA-directed RNA polymerase; transferase, multi-subunit, transcription; 3.20A {Sulfolobus shibatae} PDB: 2pmz_P 2wb1_P 2y0s_P 3hkz_P 2waq_P 4b1o_P 4b1p_X
Probab=42.74 E-value=12 Score=24.84 Aligned_cols=20 Identities=25% Similarity=0.549 Sum_probs=9.8
Q ss_pred ecCCCCccccc-------cCcCCCCCC
Q 026787 67 ICSVCDTEQPV-------AQVCTNCGV 86 (233)
Q Consensus 67 ~C~~C~~~q~~-------~~~C~~Cg~ 86 (233)
+|+.|+++.+. +-.||+||-
T Consensus 5 ~C~rCg~~fs~~el~~lP~IrCpyCGy 31 (48)
T 4ayb_P 5 RCGKCWKTFTDEQLKVLPGVRCPYCGY 31 (48)
T ss_dssp CCCCTTTTCCCCCSCCCSSSCCTTTCC
T ss_pred EeeccCCCccHHHHhhCCCcccCccCc
Confidence 45555554333 234666653
No 119
>1x6a_A LIMK-2, LIM domain kinase 2; LIM-kinase 2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=42.69 E-value=11 Score=26.00 Aligned_cols=38 Identities=21% Similarity=0.442 Sum_probs=24.9
Q ss_pred CCCcchhhhhcccCCceeEeccCCccChhhHHHHhccCCCcCCCCCccccc
Q 026787 151 HHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVID 201 (233)
Q Consensus 151 ~~CpICle~lf~s~~~v~~LpCGH~~H~~C~~~~~~~~~~~CPiCrksi~d 201 (233)
..|+.|.+.+.+ +.+.. =|..+|..|| +|-.|++.|.+
T Consensus 16 ~~C~~C~~~I~~--~~~~a--~~~~~H~~CF---------~C~~C~~~L~~ 53 (81)
T 1x6a_A 16 EFCHGCSLLMTG--PFMVA--GEFKYHPECF---------ACMSCKVIIED 53 (81)
T ss_dssp CBCTTTCCBCCS--CCBCC--TTCCBCTTSC---------BCTTTCCBCCT
T ss_pred CcCccCCCCcCc--eEEEE--CCceeccccC---------CccCCCCccCC
Confidence 468888887662 22222 3778887664 67788888753
No 120
>3j20_Y 30S ribosomal protein S27AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=42.20 E-value=11 Score=24.82 Aligned_cols=9 Identities=33% Similarity=1.091 Sum_probs=6.2
Q ss_pred cCcCCCCCC
Q 026787 78 AQVCTNCGV 86 (233)
Q Consensus 78 ~~~C~~Cg~ 86 (233)
-..||.||+
T Consensus 19 ~k~CP~CG~ 27 (50)
T 3j20_Y 19 NKFCPRCGP 27 (50)
T ss_dssp SEECSSSCS
T ss_pred cccCCCCCC
Confidence 356788876
No 121
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=41.04 E-value=7.1 Score=27.48 Aligned_cols=51 Identities=24% Similarity=0.510 Sum_probs=32.2
Q ss_pred cCCCCCCCcchhhhhcccCCceeEe--ccCCccChhhHHHH-hccCCCcCCCCCc
Q 026787 146 ENSMHHHCPICYEYLFDSLRNTTVM--KCGHTMHCECYHEM-IKRDKYCCPICSK 197 (233)
Q Consensus 146 e~~~~~~CpICle~lf~s~~~v~~L--pCGH~~H~~C~~~~-~~~~~~~CPiCrk 197 (233)
+...+..|.||.+.-.+. ....++ .|.=+||..|+..- +-.+...||.|..
T Consensus 12 ~~~~~~~C~vC~~~~s~~-~~~ll~CD~C~~~~H~~Cl~~~~vP~g~W~C~~C~~ 65 (71)
T 2ku3_A 12 LIDEDAVCSICMDGESQN-SNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQ 65 (71)
T ss_dssp CCCSSCSCSSSCCCCCCS-SSCEEECSSSCCEEEHHHHTCSSCCSSCCCCHHHHH
T ss_pred CCCCCCCCCCCCCCCCCC-CCCEEECCCCCCccccccCCCCcCCCCCcCCccCcC
Confidence 445677899998752122 122222 68899999999742 3334677887753
No 122
>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1
Probab=39.51 E-value=17 Score=18.25 Aligned_cols=15 Identities=33% Similarity=0.897 Sum_probs=11.7
Q ss_pred CcCCCCCccccchhH
Q 026787 190 YCCPICSKSVIDMSR 204 (233)
Q Consensus 190 ~~CPiCrksi~dm~~ 204 (233)
|.|++|.+++...+.
T Consensus 2 ~~C~~C~k~f~~~~~ 16 (27)
T 1znf_A 2 YKCGLCERSFVEKSA 16 (27)
T ss_dssp CBCSSSCCBCSSHHH
T ss_pred ccCCCCCCcCCCHHH
Confidence 689999999876443
No 123
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens}
Probab=39.48 E-value=3.3 Score=28.92 Aligned_cols=49 Identities=18% Similarity=0.409 Sum_probs=30.6
Q ss_pred CCCCCCcchhhhhcccCCceeEeccCCccChhhHHHHhc--cCCCcCCCCCcc
Q 026787 148 SMHHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIK--RDKYCCPICSKS 198 (233)
Q Consensus 148 ~~~~~CpICle~lf~s~~~v~~LpCGH~~H~~C~~~~~~--~~~~~CPiCrks 198 (233)
.....| ||... .+...-+.--.|.-+||..|+..-.. ...|.||.|+++
T Consensus 17 ~~~~~C-iC~~~-~~~~~MIqCd~C~~WfH~~Cvgi~~~~~~~~~~C~~C~~s 67 (68)
T 3o70_A 17 QGLVTC-FCMKP-FAGRPMIECNECHTWIHLSCAKIRKSNVPEVFVCQKCRDS 67 (68)
T ss_dssp TTCCCS-TTCCC-CTTCCEEECTTTCCEEETTTTTCCTTSCCSSCCCHHHHTC
T ss_pred CCceEe-ECCCc-CCCCCEEECCCCCccccccccCcCcccCCCcEECCCCCCC
Confidence 444567 88765 23222333346899999999974321 146889988754
No 124
>2ayj_A 50S ribosomal protein L40E; Zn-binding, beta-strand protein, structural genomics, PSI, protein structure initiative; NMR {Sulfolobus solfataricus} SCOP: g.41.8.7
Probab=38.83 E-value=21 Score=24.38 Aligned_cols=26 Identities=23% Similarity=0.645 Sum_probs=21.4
Q ss_pred ccceeecCCCCccccc-cCcCCCCCCC
Q 026787 62 DVKQVICSVCDTEQPV-AQVCTNCGVN 87 (233)
Q Consensus 62 ~v~~v~C~~C~~~q~~-~~~C~~Cg~~ 87 (233)
....++|+.|+...++ +..|..||..
T Consensus 16 ~~~k~ICrkC~ARnp~~A~~CRKCg~~ 42 (56)
T 2ayj_A 16 VFLKKVCRKCGALNPIRATKCRRCHST 42 (56)
T ss_dssp SCCCEEETTTCCEECTTCSSCTTTCCC
T ss_pred HhchhhhccccCcCCcccccccCCCCC
Confidence 3468999999999888 5789999864
No 125
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=38.82 E-value=11 Score=31.29 Aligned_cols=46 Identities=17% Similarity=0.519 Sum_probs=32.0
Q ss_pred CCCCCCCcchhhhhcccCCceeEe---ccCCccChhhHHHHhc---cCCCcCCCCCccc
Q 026787 147 NSMHHHCPICYEYLFDSLRNTTVM---KCGHTMHCECYHEMIK---RDKYCCPICSKSV 199 (233)
Q Consensus 147 ~~~~~~CpICle~lf~s~~~v~~L---pCGH~~H~~C~~~~~~---~~~~~CPiCrksi 199 (233)
...+..|.||... . ..| .|.-.||..|+..-+. .+...||.|++.-
T Consensus 4 d~~~~~C~~C~~~----g---~ll~Cd~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~~~ 55 (207)
T 3u5n_A 4 DPNEDWCAVCQNG----G---DLLCCEKCPKVFHLTCHVPTLLSFPSGDWICTFCRDIG 55 (207)
T ss_dssp CSSCSSBTTTCCC----E---EEEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSS
T ss_pred CCCCCCCCCCCCC----C---ceEEcCCCCCccCCccCCCCCCCCCCCCEEeCceeCcc
Confidence 3456679999753 1 133 4789999999976554 2468899998753
No 126
>3f6q_B LIM and senescent cell antigen-like-containing domain protein 1; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 2kbx_B 3ixe_B
Probab=38.60 E-value=12 Score=24.72 Aligned_cols=44 Identities=18% Similarity=0.404 Sum_probs=29.3
Q ss_pred CCCCCCcchhhhhcccCCceeEeccCCccChhhHHHHhccCCCcCCCCCccccch
Q 026787 148 SMHHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVIDM 202 (233)
Q Consensus 148 ~~~~~CpICle~lf~s~~~v~~LpCGH~~H~~C~~~~~~~~~~~CPiCrksi~dm 202 (233)
.....|+.|.+.+......+. .=|..+|..|| +|-.|++++.+.
T Consensus 9 ~~~~~C~~C~~~i~~~e~~~~--~~~~~~H~~CF---------~C~~C~~~L~~~ 52 (72)
T 3f6q_B 9 SASATCERCKGGFAPAEKIVN--SNGELYHEQCF---------VCAQCFQQFPEG 52 (72)
T ss_dssp CTTCBCTTTCCBCCTTCEEEE--ETTEEEETTTS---------SCTTTCCCCGGG
T ss_pred cCCccchhcCccccCCceEEE--eCcCeeCcCCC---------cccCCCCCCCCC
Confidence 345679999988764321122 33677888776 677899888754
No 127
>1qxf_A GR2, 30S ribosomal protein S27E; structural genomics, beta sheet, PSI, protein structure initiative; NMR {Archaeoglobus fulgidus} SCOP: g.41.8.4
Probab=38.24 E-value=12 Score=26.41 Aligned_cols=35 Identities=26% Similarity=0.459 Sum_probs=23.1
Q ss_pred eeecCCCCccccc------cCcCCCCCCCcceeecCccccc
Q 026787 65 QVICSVCDTEQPV------AQVCTNCGVNMGEYFCDICKFY 99 (233)
Q Consensus 65 ~v~C~~C~~~q~~------~~~C~~Cg~~f~~Y~C~~C~l~ 99 (233)
.|.|..|..+|.+ ...|..||..+++-.=.+-+|-
T Consensus 7 ~VKCp~C~niq~VFShA~tvV~C~~Cg~~L~~PTGGKA~l~ 47 (66)
T 1qxf_A 7 KVKCPDCEHEQVIFDHPSTIVKCIICGRTVAEPTGGKGNIK 47 (66)
T ss_dssp EEECTTTCCEEEEESSCSSCEECSSSCCEEEECCSSSCEEC
T ss_pred EEECCCCCCceEEEecCceEEEcccCCCEEeecCCcceeee
Confidence 6778888888766 1368888887766554444443
No 128
>1x3h_A Leupaxin; paxillin family, protein-protein interaction, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=37.87 E-value=16 Score=24.99 Aligned_cols=39 Identities=21% Similarity=0.464 Sum_probs=25.7
Q ss_pred CCCCcchhhhhcccCCceeEeccCCccChhhHHHHhccCCCcCCCCCccccc
Q 026787 150 HHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVID 201 (233)
Q Consensus 150 ~~~CpICle~lf~s~~~v~~LpCGH~~H~~C~~~~~~~~~~~CPiCrksi~d 201 (233)
...|+.|.+.+.+ +.+.. =|..+|..|| +|-.|++++.+
T Consensus 15 ~~~C~~C~~~I~~--~~v~a--~~~~~H~~CF---------~C~~C~~~L~~ 53 (80)
T 1x3h_A 15 SPKCGGCNRPVLE--NYLSA--MDTVWHPECF---------VCGDCFTSFST 53 (80)
T ss_dssp SCBCTTTCCBCCS--SCEEE--TTEEECTTTC---------BCSSSCCBSCS
T ss_pred CCccccCCCeecc--eeEEE--CCCeEecCcC---------ChhhCCCCCCC
Confidence 3568888887654 23333 3677887764 57788888865
No 129
>2k4x_A 30S ribosomal protein S27AE; metal-binding, ribonucleoprotein, zinc, zinc-finger, structural genomics, PSI-2; NMR {Thermoplasma acidophilum} SCOP: g.41.8.8
Probab=37.83 E-value=21 Score=23.94 Aligned_cols=8 Identities=38% Similarity=1.240 Sum_probs=4.3
Q ss_pred CcCCCCCC
Q 026787 79 QVCTNCGV 86 (233)
Q Consensus 79 ~~C~~Cg~ 86 (233)
..||.||.
T Consensus 19 ~fCPkCG~ 26 (55)
T 2k4x_A 19 RFCPRCGP 26 (55)
T ss_dssp CCCTTTTT
T ss_pred ccCcCCCC
Confidence 44555554
No 130
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=37.75 E-value=23 Score=26.50 Aligned_cols=26 Identities=27% Similarity=0.658 Sum_probs=17.9
Q ss_pred ccCCccChhhHHH------HhccCCCcCCCCC
Q 026787 171 KCGHTMHCECYHE------MIKRDKYCCPICS 196 (233)
Q Consensus 171 pCGH~~H~~C~~~------~~~~~~~~CPiCr 196 (233)
.||..||..|+.. .+......||-|+
T Consensus 31 ~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C~ 62 (112)
T 3v43_A 31 DCGNSGHPSCLKFSPELTVRVKALRWQCIECK 62 (112)
T ss_dssp TTCCEECHHHHTCCHHHHHHHHTSCCCCTTTC
T ss_pred hcCCCCCCchhcCCHHHHHHhhccccccccCC
Confidence 6899999999952 2333456666664
No 131
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=37.71 E-value=9.5 Score=28.86 Aligned_cols=33 Identities=18% Similarity=0.318 Sum_probs=19.9
Q ss_pred CCCcchhhhhccc---C---CceeEeccCCccChhhHHH
Q 026787 151 HHCPICYEYLFDS---L---RNTTVMKCGHTMHCECYHE 183 (233)
Q Consensus 151 ~~CpICle~lf~s---~---~~v~~LpCGH~~H~~C~~~ 183 (233)
..|.||+..-... . +-+.--.|+-.||..|+..
T Consensus 2 ~~C~~C~~~~~~n~k~g~~~~Li~C~~C~~~~H~~Cl~~ 40 (114)
T 2kwj_A 2 SYCDFCLGGSNMNKKSGRPEELVSCADCGRSGHPTCLQF 40 (114)
T ss_dssp CCCSSSCCBTTBCTTTCCCCCCEECSSSCCEECTTTTTC
T ss_pred CcCccCCCCccccccCCCCCCCeEeCCCCCccchhhCCC
Confidence 4577887653211 1 1122236899999999874
No 132
>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His protein, LIM and senescent cell antigen-like domains 1, structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=37.13 E-value=16 Score=25.24 Aligned_cols=41 Identities=15% Similarity=0.283 Sum_probs=28.0
Q ss_pred CCCCCcchhhhhcccCCceeEeccCCccChhhHHHHhccCCCcCCCCCccccch
Q 026787 149 MHHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVIDM 202 (233)
Q Consensus 149 ~~~~CpICle~lf~s~~~v~~LpCGH~~H~~C~~~~~~~~~~~CPiCrksi~dm 202 (233)
....|+-|.+.+.+ +.+. .=|..+|..|| +|-.|+++|.+.
T Consensus 14 ~~~~C~~C~~~I~~--~~v~--a~~~~~H~~CF---------~C~~C~~~L~~~ 54 (79)
T 2cor_A 14 GKYICQKCHAIIDE--QPLI--FKNDPYHPDHF---------NCANCGKELTAD 54 (79)
T ss_dssp CCCBCTTTCCBCCS--CCCC--CSSSCCCTTTS---------BCSSSCCBCCTT
T ss_pred CCCCCccCCCEecc--eEEE--ECcceeCCCCC---------EeCCCCCccCCC
Confidence 34578999988762 2233 34788888765 688898888743
No 133
>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic} SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A
Probab=36.56 E-value=18 Score=18.38 Aligned_cols=17 Identities=29% Similarity=0.530 Sum_probs=13.1
Q ss_pred CCcCCCCCccccchhHH
Q 026787 189 KYCCPICSKSVIDMSRT 205 (233)
Q Consensus 189 ~~~CPiCrksi~dm~~~ 205 (233)
.|.|++|.+++...+.+
T Consensus 2 ~~~C~~C~k~f~~~~~l 18 (30)
T 1klr_A 2 TYQCQYCEFRSADSSNL 18 (30)
T ss_dssp CCCCSSSSCCCSCSHHH
T ss_pred CccCCCCCCccCCHHHH
Confidence 37899999998865543
No 134
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=36.43 E-value=16 Score=24.35 Aligned_cols=40 Identities=25% Similarity=0.706 Sum_probs=26.3
Q ss_pred CCCCcchhhhhcccCCceeEeccCCccChhhHHHHhccCCCcCCCCCccccch
Q 026787 150 HHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVIDM 202 (233)
Q Consensus 150 ~~~CpICle~lf~s~~~v~~LpCGH~~H~~C~~~~~~~~~~~CPiCrksi~dm 202 (233)
...|+.|.+.+.+ +.+.. =|..+|..|| +|-.|+++|.+.
T Consensus 5 ~~~C~~C~~~I~~--~~~~a--~~~~~H~~CF---------~C~~C~~~L~~~ 44 (70)
T 2d8x_A 5 SSGCHQCGEFIIG--RVIKA--MNNSWHPECF---------RCDLCQEVLADI 44 (70)
T ss_dssp SSBCSSSCCBCCS--CCEEE--TTEEECTTTS---------BCSSSCCBCSSS
T ss_pred CCcCccCCCEecc--eEEEE--CcccccccCC---------EeCCCCCcCCCC
Confidence 3468888887653 22333 3778888775 677888887753
No 135
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=36.38 E-value=26 Score=31.31 Aligned_cols=24 Identities=25% Similarity=0.643 Sum_probs=21.0
Q ss_pred ceeecCCCCcccccc-CcCCCCCCC
Q 026787 64 KQVICSVCDTEQPVA-QVCTNCGVN 87 (233)
Q Consensus 64 ~~v~C~~C~~~q~~~-~~C~~Cg~~ 87 (233)
+-+.|+.|+++-.+. ..|++||..
T Consensus 207 R~l~Cs~C~t~W~~~R~~C~~Cg~~ 231 (309)
T 2fiy_A 207 RYLSCSLCACEWHYVRIKCSHCEES 231 (309)
T ss_dssp EEEEETTTCCEEECCTTSCSSSCCC
T ss_pred EEEEeCCCCCEEeecCcCCcCCCCC
Confidence 479999999998775 689999987
No 136
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=36.20 E-value=15 Score=25.84 Aligned_cols=42 Identities=17% Similarity=0.370 Sum_probs=28.1
Q ss_pred CCCCCCCcchhhhhcccCCceeEeccCCccChhhHHHHhccCCCcCCCCCccccc
Q 026787 147 NSMHHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVID 201 (233)
Q Consensus 147 ~~~~~~CpICle~lf~s~~~v~~LpCGH~~H~~C~~~~~~~~~~~CPiCrksi~d 201 (233)
+.....|+.|.+.+.+ +.+ ..=|..+|..|| +|-.|++.|.+
T Consensus 22 ~~~~~~C~~C~~~I~~--~~v--~a~~~~~H~~CF---------~C~~C~~~L~~ 63 (90)
T 2dar_A 22 GKRTPMCAHCNQVIRG--PFL--VALGKSWHPEEF---------NCAHCKNTMAY 63 (90)
T ss_dssp TTCCCBBSSSCCBCCS--CEE--EETTEEECTTTC---------BCSSSCCBCSS
T ss_pred CCCCCCCccCCCEecc--eEE--EECCccccccCC---------ccCCCCCCCCC
Confidence 3445678888888742 223 334788888765 67788888864
No 137
>3lpe_B DNA-directed RNA polymerase subunit E''; transcription regulation, SPT4, SPT5, NUSG, archaea, evoluti directed RNA polymerase; 1.90A {Methanocaldococcus jannaschii} SCOP: g.41.9.0
Probab=36.12 E-value=14 Score=25.31 Aligned_cols=19 Identities=21% Similarity=0.551 Sum_probs=14.4
Q ss_pred ecCCCCccccccCcCCCCCC
Q 026787 67 ICSVCDTEQPVAQVCTNCGV 86 (233)
Q Consensus 67 ~C~~C~~~q~~~~~C~~Cg~ 86 (233)
-|+.|+..++.+ .|++|+.
T Consensus 3 AC~~C~~v~~~~-~CpnC~~ 21 (59)
T 3lpe_B 3 ACLKCKYLTNDE-ICPICHS 21 (59)
T ss_dssp EETTTCBEESSS-BCTTTCC
T ss_pred ccccCCcccCCC-CCCCCCC
Confidence 478888887665 6888886
No 138
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens}
Probab=36.08 E-value=48 Score=23.49 Aligned_cols=21 Identities=14% Similarity=0.578 Sum_probs=11.4
Q ss_pred cceeCC-ccceeeccccCcccc
Q 026787 115 ICRIGG-RENYFHCKRCGSCYS 135 (233)
Q Consensus 115 iCR~G~-~~~~fHC~~C~~C~s 135 (233)
||+.++ .+....|+.|..-+-
T Consensus 31 vC~~~~d~~~ll~CD~C~~~yH 52 (77)
T 3shb_A 31 LCGGRQDPDKQLMCDECDMAFH 52 (77)
T ss_dssp TTCCCSCGGGEEECTTTCCEEE
T ss_pred ccCCCCCCcceeEeCCCCCccC
Confidence 444443 245677777765443
No 139
>2cur_A Skeletal muscle LIM-protein 1; four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=35.89 E-value=19 Score=23.89 Aligned_cols=38 Identities=24% Similarity=0.589 Sum_probs=25.7
Q ss_pred CCCCcchhhhhcccCCceeEeccCCccChhhHHHHhccCCCcCCCCCcccc
Q 026787 150 HHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVI 200 (233)
Q Consensus 150 ~~~CpICle~lf~s~~~v~~LpCGH~~H~~C~~~~~~~~~~~CPiCrksi~ 200 (233)
...|+.|.+.+.. +.+.. =|..+|..|| +|-.|+++|.
T Consensus 5 ~~~C~~C~~~I~~--~~~~a--~~~~~H~~CF---------~C~~C~~~L~ 42 (69)
T 2cur_A 5 SSGCVKCNKAITS--GGITY--QDQPWHADCF---------VCVTCSKKLA 42 (69)
T ss_dssp CCCCSSSCCCCCT--TCEEE--TTEEECTTTT---------BCTTTCCBCT
T ss_pred cCCCcccCCEeCc--ceEEE--CccccccCcC---------EECCCCCCCC
Confidence 3568888888753 23333 3778888765 5778888875
No 140
>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=35.30 E-value=21 Score=17.97 Aligned_cols=16 Identities=25% Similarity=0.603 Sum_probs=12.3
Q ss_pred CCcCCCCCccccchhH
Q 026787 189 KYCCPICSKSVIDMSR 204 (233)
Q Consensus 189 ~~~CPiCrksi~dm~~ 204 (233)
.+.|++|.+++...+.
T Consensus 2 ~~~C~~C~~~f~~~~~ 17 (29)
T 2m0e_A 2 EHKCPHCDKKFNQVGN 17 (29)
T ss_dssp CCCCSSCCCCCCTTTH
T ss_pred CCcCCCCCcccCCHHH
Confidence 4789999999875444
No 141
>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A
Probab=35.29 E-value=22 Score=18.04 Aligned_cols=16 Identities=13% Similarity=0.727 Sum_probs=12.4
Q ss_pred CCcCCCCCccccchhH
Q 026787 189 KYCCPICSKSVIDMSR 204 (233)
Q Consensus 189 ~~~CPiCrksi~dm~~ 204 (233)
.+.|++|.+++...+.
T Consensus 2 ~~~C~~C~~~f~~~~~ 17 (29)
T 1ard_A 2 SFVCEVCTRAFARQEH 17 (29)
T ss_dssp CCBCTTTCCBCSSHHH
T ss_pred CeECCCCCcccCCHHH
Confidence 4789999999876443
No 142
>2kdx_A HYPA, hydrogenase/urease nickel incorporation protein HYPA; metallochaperone, metal-binding, metal- binding protein; NMR {Helicobacter pylori}
Probab=35.19 E-value=11 Score=28.58 Aligned_cols=10 Identities=20% Similarity=0.644 Sum_probs=4.6
Q ss_pred eeecCCCCcc
Q 026787 65 QVICSVCDTE 74 (233)
Q Consensus 65 ~v~C~~C~~~ 74 (233)
...|..|+.+
T Consensus 73 ~~~C~~CG~~ 82 (119)
T 2kdx_A 73 ELECKDCSHV 82 (119)
T ss_dssp EEECSSSSCE
T ss_pred eEEcCCCCCE
Confidence 4444444443
No 143
>1vq8_Z 50S ribosomal protein L37AE; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1vq4_Z* 1vq6_Z* 1vq5_Z* 1vq7_Z* 1vq9_Z* 1vqk_Z* 1vql_Z* 1vqm_Z* 1vqn_Z* 1vqo_Z* 1vqp_Z* 1yhq_Z* 1yi2_Z* 1yij_Z* 1yit_Z* 1yj9_Z* 1yjn_Z* 1yjw_Z* 2qa4_Z* 1s72_Z* ...
Probab=35.04 E-value=14 Score=26.88 Aligned_cols=33 Identities=27% Similarity=0.625 Sum_probs=22.6
Q ss_pred ccCcCCCCCCCcceeecCccccccCCCCcCeeccCCCCcceeCC
Q 026787 77 VAQVCTNCGVNMGEYFCDICKFYDDDIEKGQFHCDDCGICRIGG 120 (233)
Q Consensus 77 ~~~~C~~Cg~~f~~Y~C~~C~l~d~~~~k~~yHC~~CgiCR~G~ 120 (233)
..-.|++||... +| ++...+++|+.||-=-.||
T Consensus 26 ~~y~Cp~CG~~~---------v~--r~atGiW~C~~Cg~~~agg 58 (83)
T 1vq8_Z 26 EDHACPNCGEDR---------VD--RQGTGIWQCSYCDYKFTGG 58 (83)
T ss_dssp SCEECSSSCCEE---------EE--EEETTEEEETTTCCEEECC
T ss_pred ccCcCCCCCCcc---------ee--ccCCCeEECCCCCCEecCC
Confidence 344677777632 12 3457899999999887776
No 144
>1ryq_A DNA-directed RNA polymerase, subunit E''; structural genomics, zinc, PSI, protein structure initiative; 1.38A {Pyrococcus furiosus} SCOP: g.41.9.3 PDB: 3qqc_E
Probab=34.76 E-value=20 Score=25.46 Aligned_cols=24 Identities=21% Similarity=0.551 Sum_probs=18.7
Q ss_pred cceeecCCCCccccccCcCCCCCCC
Q 026787 63 VKQVICSVCDTEQPVAQVCTNCGVN 87 (233)
Q Consensus 63 v~~v~C~~C~~~q~~~~~C~~Cg~~ 87 (233)
..+.-|..|...+ ..+.||+||..
T Consensus 9 ~~~~AC~~C~~~~-~~~~CPnC~s~ 32 (69)
T 1ryq_A 9 SSEKACRHCHYIT-SEDRCPVCGSR 32 (69)
T ss_dssp --CEEETTTCBEE-SSSSCTTTCCC
T ss_pred chhhhHHhCCccc-cCCcCCCccCC
Confidence 4578899999977 77899999853
No 145
>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=34.34 E-value=16 Score=18.66 Aligned_cols=16 Identities=25% Similarity=0.654 Sum_probs=12.5
Q ss_pred CCcCCCCCccccchhH
Q 026787 189 KYCCPICSKSVIDMSR 204 (233)
Q Consensus 189 ~~~CPiCrksi~dm~~ 204 (233)
.|.|++|.+++...+.
T Consensus 3 ~~~C~~C~k~f~~~~~ 18 (28)
T 2kvf_A 3 PYSCSVCGKRFSLKHQ 18 (28)
T ss_dssp SEECSSSCCEESCHHH
T ss_pred CccCCCCCcccCCHHH
Confidence 5789999999876443
No 146
>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A
Probab=33.48 E-value=24 Score=19.40 Aligned_cols=17 Identities=24% Similarity=0.638 Sum_probs=13.4
Q ss_pred CCCcCCCCCccccchhH
Q 026787 188 DKYCCPICSKSVIDMSR 204 (233)
Q Consensus 188 ~~~~CPiCrksi~dm~~ 204 (233)
..|.||+|.+++...+.
T Consensus 10 k~~~C~~C~k~f~~~~~ 26 (37)
T 1p7a_A 10 KPFQCPDCDRSFSRSDH 26 (37)
T ss_dssp SSBCCTTTCCCBSSHHH
T ss_pred CCccCCCCCcccCcHHH
Confidence 36899999999986544
No 147
>3u5c_b RP61, YS20, 40S ribosomal protein S27-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_X 3u5g_b
Probab=33.33 E-value=26 Score=25.69 Aligned_cols=35 Identities=23% Similarity=0.353 Sum_probs=26.3
Q ss_pred ceeecCCCCccccc------cCcCCCCCCCcceeecCcccc
Q 026787 64 KQVICSVCDTEQPV------AQVCTNCGVNMGEYFCDICKF 98 (233)
Q Consensus 64 ~~v~C~~C~~~q~~------~~~C~~Cg~~f~~Y~C~~C~l 98 (233)
-.|.|..|..+|.+ ...|..||..+++-.=.+-+|
T Consensus 33 m~VkCp~C~~~q~VFSha~t~V~C~~Cg~~L~~PTGGKa~l 73 (82)
T 3u5c_b 33 LDVKCPGCLNITTVFSHAQTAVTCESCSTILCTPTGGKAKL 73 (82)
T ss_dssp EEEECTTSCSCEEEESBCSSCCCCSSSCCCCEECCSSBCEE
T ss_pred EEEECCCCCCeeEEEecCCeEEEccccCCEEeccCCCCeEe
Confidence 48999999999977 247999999887765444444
No 148
>2l3k_A Rhombotin-2, linker, LIM domain-binding protein 1; LMO2(LIM2)-LDB1(LID), chimera, fusion protein, oncoprotein; NMR {Mus musculus} PDB: 2l6y_B 2l6z_C
Probab=32.82 E-value=16 Score=27.49 Aligned_cols=13 Identities=8% Similarity=-0.123 Sum_probs=7.0
Q ss_pred CCccChhhHHHHh
Q 026787 173 GHTMHCECYHEMI 185 (233)
Q Consensus 173 GH~~H~~C~~~~~ 185 (233)
|..+...|+.+++
T Consensus 57 g~~yC~~cy~~~~ 69 (123)
T 2l3k_A 57 SDIVCEQDIYEWT 69 (123)
T ss_dssp SSEEEGGGHHHHH
T ss_pred CEEEcHHHhHHHh
Confidence 4555555555554
No 149
>3j20_W 30S ribosomal protein S27E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=32.81 E-value=17 Score=25.35 Aligned_cols=35 Identities=29% Similarity=0.370 Sum_probs=25.1
Q ss_pred ceeecCCCCccccc------cCcCCCCCCCcceeecCcccc
Q 026787 64 KQVICSVCDTEQPV------AQVCTNCGVNMGEYFCDICKF 98 (233)
Q Consensus 64 ~~v~C~~C~~~q~~------~~~C~~Cg~~f~~Y~C~~C~l 98 (233)
-.|.|..|..+|.+ ...|..||..+++-.=.+-+|
T Consensus 14 m~VkCp~C~~~q~VFSha~t~V~C~~Cgt~L~~PTGGKa~l 54 (63)
T 3j20_W 14 LRVKCIDCGNEQIVFSHPATKVRCLICGATLVEPTGGKGIV 54 (63)
T ss_dssp EEEECSSSCCEEEEESSCSSCEECSSSCCEEEECCSSSCEE
T ss_pred EEEECCCCCCeeEEEecCCeEEEccCcCCEEecCCCCcEEE
Confidence 47889999999877 236888888887655444443
No 150
>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1
Probab=32.58 E-value=18 Score=23.30 Aligned_cols=32 Identities=19% Similarity=0.208 Sum_probs=20.7
Q ss_pred CCCcCCCCCccccchhHHhhhhHHHHHhCCCC
Q 026787 188 DKYCCPICSKSVIDMSRTWKRIDEEIEATVMP 219 (233)
Q Consensus 188 ~~~~CPiCrksi~dm~~~~~~lD~~i~~~pmP 219 (233)
..|.|++|.+.+.....+.+.+..--...|-|
T Consensus 36 ~~~~C~~C~~~f~~~~~L~~H~~~h~~~~p~p 67 (70)
T 1x5w_A 36 RPFKCNYCSFDTKQPSNLSKHMKKFHGDMSGP 67 (70)
T ss_dssp CSEECSSSSCEESSHHHHHHHHHHHHSSSCCS
T ss_pred CCEeCCCCCCccCCHHHHHHHHHHHhCCCCCC
Confidence 35899999999987666555544433344444
No 151
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=32.07 E-value=26 Score=32.34 Aligned_cols=48 Identities=19% Similarity=0.516 Sum_probs=33.5
Q ss_pred CCCCcchhhhhcccCCceeEeccCCc--cChhhHHHHhc-cCCCcCCCCCcccc
Q 026787 150 HHHCPICYEYLFDSLRNTTVMKCGHT--MHCECYHEMIK-RDKYCCPICSKSVI 200 (233)
Q Consensus 150 ~~~CpICle~lf~s~~~v~~LpCGH~--~H~~C~~~~~~-~~~~~CPiCrksi~ 200 (233)
...|||=+..|. .+++...|.|. |-..=|.++.. ....+||+|.+.+.
T Consensus 249 SL~CPlS~~ri~---~PvRg~~C~HlQCFDl~sfL~~~~~~~~W~CPIC~k~~~ 299 (371)
T 3i2d_A 249 SLQCPISYTRMK---YPSKSINCKHLQCFDALWFLHSQLQIPTWQCPVCQIDIA 299 (371)
T ss_dssp ESBCTTTSSBCS---SEEEETTCCSSCCEEHHHHHHHHHHSCCCBCTTTCCBCC
T ss_pred eecCCCcccccc---ccCcCCcCCCcceECHHHHHHHhhcCCceeCCCCCcccC
Confidence 347998777653 57888999987 54444444432 35799999999884
No 152
>3gox_A Restriction endonuclease HPY99I; endonuclease-DNA complex, restriction enzyme, HPY99I, pseudopalindrome; HET: 1PE; 1.50A {Helicobacter pylori} PDB: 3fc3_A*
Probab=31.70 E-value=55 Score=27.66 Aligned_cols=73 Identities=19% Similarity=0.278 Sum_probs=48.0
Q ss_pred eeCCccceeeccccCccccccccccceeecCC---CCCCCcchhhhhcccCCceeEeccCCccChhhHHHHhccCC----
Q 026787 117 RIGGRENYFHCKRCGSCYSTSLRNNHLCIENS---MHHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDK---- 189 (233)
Q Consensus 117 R~G~~~~~fHC~~C~~C~s~~l~~~H~C~e~~---~~~~CpICle~lf~s~~~v~~LpCGH~~H~~C~~~~~~~~~---- 189 (233)
+.|.+.....|.+|+.=-+.+.+...+=..+. ....|.-|.-.+ ..-.+. ..=+++++..+.
T Consensus 68 ~~~~~~G~K~C~~Cg~~Kp~seF~rnkt~~DG~~~l~s~CkeC~~~l--r~YGIT---------~eey~~L~e~Qg~~~~ 136 (200)
T 3gox_A 68 RTGKGYDKKICNICHILKNTDGFEINQTDAKGRKTTRPSCRECRKNI--DGVKLS---------STEKKKMDEIAPPKGS 136 (200)
T ss_dssp GSSTTSSEEECTTTCBEEEGGGSCEEEECTTSCEEECSSCHHHHHHH--HCSCCC---------HHHHHHHHTTCCCTTC
T ss_pred eccccCCCeECCCCCCCcchhhhcccccCCCCCcccCccChhhhhcc--CCcCCC---------HHHHHHHHHHcccCCC
Confidence 77888899999999997777666444443333 567899997653 111111 122455666555
Q ss_pred -CcCCCCCcccc
Q 026787 190 -YCCPICSKSVI 200 (233)
Q Consensus 190 -~~CPiCrksi~ 200 (233)
..||||++...
T Consensus 137 ~G~C~ICg~~~~ 148 (200)
T 3gox_A 137 VFTCPICEKRSI 148 (200)
T ss_dssp EEECTTTCCEEE
T ss_pred CCcCcCCCCCCC
Confidence 78999998776
No 153
>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=31.53 E-value=26 Score=18.99 Aligned_cols=18 Identities=17% Similarity=0.397 Sum_probs=13.8
Q ss_pred CCCcCCCCCccccchhHH
Q 026787 188 DKYCCPICSKSVIDMSRT 205 (233)
Q Consensus 188 ~~~~CPiCrksi~dm~~~ 205 (233)
..|.|++|.+++...+.+
T Consensus 8 ~~~~C~~C~k~f~~~~~l 25 (36)
T 2elr_A 8 KTHLCDMCGKKFKSKGTL 25 (36)
T ss_dssp SSCBCTTTCCBCSSHHHH
T ss_pred CCeecCcCCCCcCchHHH
Confidence 368999999998865443
No 154
>2kvg_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=31.08 E-value=16 Score=18.79 Aligned_cols=16 Identities=25% Similarity=0.829 Sum_probs=12.4
Q ss_pred CCcCCCCCccccchhH
Q 026787 189 KYCCPICSKSVIDMSR 204 (233)
Q Consensus 189 ~~~CPiCrksi~dm~~ 204 (233)
.|.|++|.+++...+.
T Consensus 3 ~~~C~~C~k~f~~~~~ 18 (27)
T 2kvg_A 3 PYRCPLCRAGCPSLAS 18 (27)
T ss_dssp TEEETTTTEEESCHHH
T ss_pred CcCCCCCCcccCCHHH
Confidence 4789999999876443
No 155
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=31.03 E-value=4.5 Score=26.82 Aligned_cols=45 Identities=20% Similarity=0.596 Sum_probs=28.7
Q ss_pred CCCCCCcchhhhhcccCCceeEeccCCccChhhHHHHhc---cCCCcCCCCC
Q 026787 148 SMHHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIK---RDKYCCPICS 196 (233)
Q Consensus 148 ~~~~~CpICle~lf~s~~~v~~LpCGH~~H~~C~~~~~~---~~~~~CPiCr 196 (233)
..+..|.||.+. .+-+.--.|.-.||..|+..-+. .....||.|.
T Consensus 7 ~~~~~C~vC~~~----g~ll~Cd~C~~~~H~~Cl~ppl~~~p~g~W~C~~C~ 54 (56)
T 2yql_A 7 GHEDFCSVCRKS----GQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQ 54 (56)
T ss_dssp SSCCSCSSSCCS----SCCEECSSSSCEECSSSSSSCCCSCCCSSCCCHHHH
T ss_pred CCCCCCccCCCC----CeEEEcCCCCcceECccCCCCcCCCCCCceEChhhh
Confidence 345679999864 12222236889999999985433 2356677774
No 156
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=30.96 E-value=27 Score=32.04 Aligned_cols=47 Identities=23% Similarity=0.559 Sum_probs=33.8
Q ss_pred CCCcchhhhhcccCCceeEeccCCc--cChhhHHHHhc-cCCCcCCCCCcccc
Q 026787 151 HHCPICYEYLFDSLRNTTVMKCGHT--MHCECYHEMIK-RDKYCCPICSKSVI 200 (233)
Q Consensus 151 ~~CpICle~lf~s~~~v~~LpCGH~--~H~~C~~~~~~-~~~~~CPiCrksi~ 200 (233)
..|||=+..|. .+++...|.|. |-..=|.++.. ....+||+|++.+.
T Consensus 216 L~CPlS~~ri~---~P~Rg~~C~HlqCFDl~sfL~~~~~~~~W~CPiC~k~~~ 265 (360)
T 4fo9_A 216 LMCPLGKMRLT---IPCRAVTCTHLQCFDAALYLQMNEKKPTWICPVCDKKAA 265 (360)
T ss_dssp SBCTTTCSBCS---SEEEETTCCCCCCEEHHHHHHHHHHSCCCBCTTTCSBCC
T ss_pred eeCCCccceec---cCCcCCCCCCCccCCHHHHHHHHhhCCCeECCCCCcccC
Confidence 36998776653 57888899987 55554544443 35789999999985
No 157
>1v6g_A Actin binding LIM protein 2; LIM domain, zinc binding domain, ablim2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=30.82 E-value=23 Score=24.24 Aligned_cols=39 Identities=21% Similarity=0.600 Sum_probs=26.8
Q ss_pred CCCCcchhhhhcccCCceeEeccCCccChhhHHHHhccCCCcCCCCCccccc
Q 026787 150 HHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVID 201 (233)
Q Consensus 150 ~~~CpICle~lf~s~~~v~~LpCGH~~H~~C~~~~~~~~~~~CPiCrksi~d 201 (233)
...|+.|.+.+.+ +.+. .=|..+|..|| +|-.|+++|.+
T Consensus 15 ~~~C~~C~~~I~~--~~v~--a~~~~wH~~CF---------~C~~C~~~L~~ 53 (81)
T 1v6g_A 15 GTRCFSCDQFIEG--EVVS--ALGKTYHPDCF---------VCAVCRLPFPP 53 (81)
T ss_dssp CCBCTTTCCBCCS--CCEE--ETTEEECTTTS---------SCSSSCCCCCS
T ss_pred CCcCccccCEecc--ceEE--ECCceeCccCC---------ccccCCCCCCC
Confidence 3479999988763 2333 34788888775 57788888764
No 158
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Probab=30.69 E-value=11 Score=24.83 Aligned_cols=39 Identities=26% Similarity=0.514 Sum_probs=25.7
Q ss_pred CCCCcchhhhhcccCCceeEeccCCccChhhHHHHhccCCCcCCCCCccccc
Q 026787 150 HHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVID 201 (233)
Q Consensus 150 ~~~CpICle~lf~s~~~v~~LpCGH~~H~~C~~~~~~~~~~~CPiCrksi~d 201 (233)
...|+.|.+.+. + +. +..=|..+|..|| +|-.|++++.+
T Consensus 5 ~~~C~~C~~~I~-~-~~--~~a~~~~~H~~CF---------~C~~C~~~L~~ 43 (66)
T 1nyp_A 5 VPICGACRRPIE-G-RV--VNAMGKQWHVEHF---------VCAKCEKPFLG 43 (66)
T ss_dssp CCEETTTTEECC-S-CE--ECCTTSBEETTTC---------BCTTTCCBCSS
T ss_pred CCCCcccCCEec-c-eE--EEECccccccCcC---------EECCCCCCCCC
Confidence 346888888765 2 22 2334778887765 67788888764
No 159
>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}
Probab=30.65 E-value=19 Score=18.25 Aligned_cols=16 Identities=25% Similarity=0.771 Sum_probs=12.5
Q ss_pred CCcCCCCCccccchhH
Q 026787 189 KYCCPICSKSVIDMSR 204 (233)
Q Consensus 189 ~~~CPiCrksi~dm~~ 204 (233)
.+.|++|.+++...+.
T Consensus 3 ~~~C~~C~k~f~~~~~ 18 (27)
T 2kvh_A 3 PFSCSLCPQRSRDFSA 18 (27)
T ss_dssp CEECSSSSCEESSHHH
T ss_pred CccCCCcChhhCCHHH
Confidence 4789999999876543
No 160
>2cuq_A Four and A half LIM domains 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=30.29 E-value=29 Score=23.53 Aligned_cols=38 Identities=24% Similarity=0.515 Sum_probs=26.0
Q ss_pred CCCCcchhhhhcccCCceeEeccCCccChhhHHHHhccCCCcCCCCCcccc
Q 026787 150 HHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVI 200 (233)
Q Consensus 150 ~~~CpICle~lf~s~~~v~~LpCGH~~H~~C~~~~~~~~~~~CPiCrksi~ 200 (233)
...|+.|.+.+... . +..=|..+|..|| +|-.|+++|.
T Consensus 15 ~~~C~~C~~~I~~~--~--v~a~~~~~H~~CF---------~C~~C~~~L~ 52 (80)
T 2cuq_A 15 APRCARCSKTLTQG--G--VTYRDQPWHRECL---------VCTGCQTPLA 52 (80)
T ss_dssp SCCCTTTCCCCCSC--C--EESSSSEECTTTC---------BCSSSCCBCT
T ss_pred CCcCCCCCCEecCc--E--EEECCchhhhhhC---------CcccCCCcCC
Confidence 45788888887542 2 2234788888765 6778888875
No 161
>1rim_A E6APC2 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1
Probab=30.18 E-value=28 Score=18.96 Aligned_cols=18 Identities=28% Similarity=0.694 Sum_probs=13.6
Q ss_pred CCcCCCCCccccchhHHh
Q 026787 189 KYCCPICSKSVIDMSRTW 206 (233)
Q Consensus 189 ~~~CPiCrksi~dm~~~~ 206 (233)
.|.|++|.+.+...+.+.
T Consensus 2 p~~C~~C~k~F~~~~~L~ 19 (33)
T 1rim_A 2 KFACPECPKRFMRSDHLS 19 (33)
T ss_dssp CCCCSSSCCCCSSHHHHH
T ss_pred cccCCCCCchhCCHHHHH
Confidence 478999999998655443
No 162
>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1
Probab=30.15 E-value=26 Score=17.95 Aligned_cols=16 Identities=19% Similarity=0.679 Sum_probs=12.4
Q ss_pred CCcCCCCCccccchhH
Q 026787 189 KYCCPICSKSVIDMSR 204 (233)
Q Consensus 189 ~~~CPiCrksi~dm~~ 204 (233)
.+.|+.|.+++...+.
T Consensus 2 ~~~C~~C~k~f~~~~~ 17 (30)
T 1paa_A 2 AYACGLCNRAFTRRDL 17 (30)
T ss_dssp CSBCTTTCCBCSSSHH
T ss_pred CcCCcccCcccCChHH
Confidence 4789999999876544
No 163
>1qyp_A RNA polymerase II; transcription, RPB9, Zn ribbon, hyperthermophilic, extremophIle; NMR {Thermococcus celer} SCOP: g.41.3.1
Probab=29.79 E-value=33 Score=22.56 Aligned_cols=35 Identities=20% Similarity=0.567 Sum_probs=17.1
Q ss_pred CcCCCCCCCcceeecCccccccCCCCcCeeccCCCC
Q 026787 79 QVCTNCGVNMGEYFCDICKFYDDDIEKGQFHCDDCG 114 (233)
Q Consensus 79 ~~C~~Cg~~f~~Y~C~~C~l~d~~~~k~~yHC~~Cg 114 (233)
..|+.||..-+.|+=..=+ =.|++..-.|.|..||
T Consensus 16 ~~Cp~Cg~~~~~~~q~Q~r-sadep~T~fy~C~~Cg 50 (57)
T 1qyp_A 16 ITCPKCGNDTAYWWEMQTR-AGDEPSTIFYKCTKCG 50 (57)
T ss_dssp CCCTTTCCSEEEEEEECCS-SSSCSSEEEEEESSSC
T ss_pred eECCCCCCCEEEEEEeecc-cCCCCCcEEEEcCCCC
Confidence 3577777765555500000 0233445556666665
No 164
>1vd4_A Transcription initiation factor IIE, alpha subunit; zinc finger; NMR {Homo sapiens} SCOP: g.41.3.1
Probab=29.50 E-value=29 Score=22.15 Aligned_cols=11 Identities=27% Similarity=0.700 Sum_probs=4.8
Q ss_pred ceeeccccCcc
Q 026787 123 NYFHCKRCGSC 133 (233)
Q Consensus 123 ~~fHC~~C~~C 133 (233)
.-|-|..||.-
T Consensus 38 k~~~C~~C~k~ 48 (62)
T 1vd4_A 38 GTFRCTFCHTE 48 (62)
T ss_dssp TEEBCSSSCCB
T ss_pred CCEECCCCCCc
Confidence 34444444443
No 165
>3u5c_f 40S ribosomal protein S31; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3u5g_f
Probab=29.45 E-value=26 Score=27.87 Aligned_cols=21 Identities=29% Similarity=0.855 Sum_probs=15.2
Q ss_pred cCcCCC--CCC--C----cceeecCcccc
Q 026787 78 AQVCTN--CGV--N----MGEYFCDICKF 98 (233)
Q Consensus 78 ~~~C~~--Cg~--~----f~~Y~C~~C~l 98 (233)
...||+ ||. - |+|+||.+|.+
T Consensus 118 ~~~c~~~~cg~g~fma~h~~r~~cgkc~~ 146 (152)
T 3u5c_f 118 RRECSNPTCGAGVFLANHKDRLYCGKCHS 146 (152)
T ss_dssp SCBCCSTTSCSSSBEEECSSCEEESSSSS
T ss_pred cCcCCCccCCCceEecccCCCcccCCCce
Confidence 467999 987 3 35778888864
No 166
>2m0f_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=28.94 E-value=22 Score=17.94 Aligned_cols=16 Identities=19% Similarity=0.389 Sum_probs=12.3
Q ss_pred CCcCCCCCccccchhH
Q 026787 189 KYCCPICSKSVIDMSR 204 (233)
Q Consensus 189 ~~~CPiCrksi~dm~~ 204 (233)
.+.|++|.+++...+.
T Consensus 2 ~~~C~~C~k~f~~~~~ 17 (29)
T 2m0f_A 2 PLKCRECGKQFTTSGN 17 (29)
T ss_dssp CEECTTTSCEESCHHH
T ss_pred CccCCCCCCccCChhH
Confidence 3789999999876544
No 167
>2vpb_A Hpygo1, pygopus homolog 1; gene regulation, WNT signaling pathway, WNT signaling complex, chromosomal rearrangement, signaling protein; 1.59A {Homo sapiens} PDB: 2vpd_A 2yyr_A* 2dx8_A* 2vp7_A 2vpg_A* 2vpe_A*
Probab=28.92 E-value=23 Score=24.37 Aligned_cols=34 Identities=21% Similarity=0.300 Sum_probs=23.7
Q ss_pred CCCCCcchhhhhcccCCceeEe-ccCCccChhhHH
Q 026787 149 MHHHCPICYEYLFDSLRNTTVM-KCGHTMHCECYH 182 (233)
Q Consensus 149 ~~~~CpICle~lf~s~~~v~~L-pCGH~~H~~C~~ 182 (233)
....|++|.....+...-+.-- .|.-.||..|..
T Consensus 7 ~~~~C~~C~~p~~~~~~mI~CD~~C~~WfH~~Cvg 41 (65)
T 2vpb_A 7 PVYPCGICTNEVNDDQDAILCEASCQKWFHRICTG 41 (65)
T ss_dssp --CBCTTTCSBCCTTSCEEEBTTTTCCEEEHHHHT
T ss_pred CcCcCccCCCccCCCCCeEecccCccccCchhccC
Confidence 3457999999866554333334 788999999984
No 168
>6rxn_A Rubredoxin; electron transfer(iron-sulfur protein); 1.50A {Desulfovibrio desulfuricans} SCOP: g.41.5.1
Probab=28.72 E-value=28 Score=22.60 Aligned_cols=13 Identities=46% Similarity=1.464 Sum_probs=9.5
Q ss_pred cceeecCcccc-cc
Q 026787 88 MGEYFCDICKF-YD 100 (233)
Q Consensus 88 f~~Y~C~~C~l-~d 100 (233)
|.+|-|.+|.+ ||
T Consensus 2 m~~y~C~vCGyvyd 15 (46)
T 6rxn_A 2 MQKYVCNVCGYEYD 15 (46)
T ss_dssp CCCEEETTTCCEEC
T ss_pred CCEEECCCCCeEEe
Confidence 56788888865 45
No 169
>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A
Probab=28.64 E-value=21 Score=18.18 Aligned_cols=16 Identities=31% Similarity=0.877 Sum_probs=12.1
Q ss_pred CCcCCCCCccccchhH
Q 026787 189 KYCCPICSKSVIDMSR 204 (233)
Q Consensus 189 ~~~CPiCrksi~dm~~ 204 (233)
.+.|++|.+++...+.
T Consensus 2 ~~~C~~C~k~f~~~~~ 17 (29)
T 1rik_A 2 KFACPECPKRFMRSDH 17 (29)
T ss_dssp CEECSSSSCEESCSHH
T ss_pred CccCCCCCchhCCHHH
Confidence 3789999999876443
No 170
>2m0d_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}
Probab=28.56 E-value=23 Score=17.95 Aligned_cols=16 Identities=31% Similarity=0.700 Sum_probs=12.5
Q ss_pred CCcCCCCCccccchhH
Q 026787 189 KYCCPICSKSVIDMSR 204 (233)
Q Consensus 189 ~~~CPiCrksi~dm~~ 204 (233)
.+.|++|.+++...+.
T Consensus 3 ~~~C~~C~~~f~~~~~ 18 (30)
T 2m0d_A 3 PYQCDYCGRSFSDPTS 18 (30)
T ss_dssp CEECTTTCCEESCHHH
T ss_pred CccCCCCCcccCCHHH
Confidence 4789999999876544
No 171
>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=28.20 E-value=30 Score=19.53 Aligned_cols=19 Identities=21% Similarity=0.448 Sum_probs=14.4
Q ss_pred CCCcCCCCCccccchhHHh
Q 026787 188 DKYCCPICSKSVIDMSRTW 206 (233)
Q Consensus 188 ~~~~CPiCrksi~dm~~~~ 206 (233)
..+.|++|.+++...+.+.
T Consensus 10 k~~~C~~C~k~f~~~~~L~ 28 (42)
T 2ytb_A 10 KPYRCDQCGKAFSQKGSLI 28 (42)
T ss_dssp CSBCCTTTTCCBSSHHHHH
T ss_pred CCeeCCCccchhCCHHHHH
Confidence 4689999999998655443
No 172
>3a7q_B Low-density lipoprotein receptor-related protein; signaling protein; HET: NAG; 2.60A {Homo sapiens}
Probab=27.98 E-value=45 Score=20.85 Aligned_cols=31 Identities=26% Similarity=0.807 Sum_probs=21.7
Q ss_pred ceeeccccCcccccccc--ccceeecCCCCCCCc
Q 026787 123 NYFHCKRCGSCYSTSLR--NNHLCIENSMHHHCP 154 (233)
Q Consensus 123 ~~fHC~~C~~C~s~~l~--~~H~C~e~~~~~~Cp 154 (233)
+.|.|.. +.|++..+. +..-|..++.+.+|+
T Consensus 11 ~~f~C~~-g~CI~~~~~CDg~~DC~DgSDE~~C~ 43 (44)
T 3a7q_B 11 DQFQCRN-ERCIPSVWRCDEDDDCLDHSDEDDCP 43 (44)
T ss_dssp TEEECTT-SCEEEGGGTTSSSCCSSSSTTTSCC-
T ss_pred CceEcCC-CCEeChhhccCCCCCCCCCccccCCC
Confidence 5788887 889888765 556666666666664
No 173
>1ajj_A LR5, low-density lipoprotein receptor; LDL receptor, cysteine-rich module, calcium; 1.70A {Homo sapiens} SCOP: g.12.1.1
Probab=27.80 E-value=33 Score=20.58 Aligned_cols=31 Identities=32% Similarity=0.679 Sum_probs=18.4
Q ss_pred ceeeccccCcccccccc--ccceeecCCCCCCCc
Q 026787 123 NYFHCKRCGSCYSTSLR--NNHLCIENSMHHHCP 154 (233)
Q Consensus 123 ~~fHC~~C~~C~s~~l~--~~H~C~e~~~~~~Cp 154 (233)
+.|.|.. |.|++.+.. +.-.|..++.+.+||
T Consensus 5 ~~f~C~~-g~Ci~~~~~CDg~~DC~DgsDE~~C~ 37 (37)
T 1ajj_A 5 FEFHCLS-GECIHSSWRCDGGPDCKDKSDEENCA 37 (37)
T ss_dssp TCEECTT-SCEECGGGTTSSSCCSTTCGGGTTCC
T ss_pred CceEcCC-CCeechhhccCCCCCCCCCccccCCC
Confidence 4677765 778777654 444555555555554
No 174
>1twf_L ABC10-alpha, DNA-directed RNA polymerases I, II, and III 7.7 K polypeptide; transcription, mRNA, multiprotein complex; HET: UTP; 2.30A {Saccharomyces cerevisiae} SCOP: g.41.9.2 PDB: 1i3q_L 1i6h_L 1k83_L* 1nik_L 1nt9_L 1pqv_L 1r5u_L 1r9s_L* 1r9t_L* 1sfo_L* 1twa_L* 1twc_L* 1i50_L* 1twg_L* 1twh_L* 1wcm_L 1y1v_L 1y1w_L 1y1y_L 1y77_L* ...
Probab=27.75 E-value=28 Score=24.51 Aligned_cols=7 Identities=57% Similarity=1.578 Sum_probs=3.9
Q ss_pred ccCCCCc
Q 026787 109 HCDDCGI 115 (233)
Q Consensus 109 HC~~Cgi 115 (233)
+|+.||-
T Consensus 47 rCp~CG~ 53 (70)
T 1twf_L 47 RCKDCGH 53 (70)
T ss_dssp CCSSSCC
T ss_pred cCCCCCc
Confidence 5655553
No 175
>3iz6_X 40S ribosomal protein S27 (S27E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=27.73 E-value=31 Score=25.45 Aligned_cols=35 Identities=20% Similarity=0.360 Sum_probs=25.6
Q ss_pred eeecCCCCccccc------cCcCCCCCCCcceeecCccccc
Q 026787 65 QVICSVCDTEQPV------AQVCTNCGVNMGEYFCDICKFY 99 (233)
Q Consensus 65 ~v~C~~C~~~q~~------~~~C~~Cg~~f~~Y~C~~C~l~ 99 (233)
.|.|..|..+|.+ ...|..||..+++-.=.+-+|-
T Consensus 36 ~VkCp~C~~~~~VFShA~t~V~C~~CgtvL~~PTGGKa~l~ 76 (86)
T 3iz6_X 36 DVKCQGCFNITTVFSHSQTVVVCPGCQTVLCQPTGGKARLT 76 (86)
T ss_dssp EEECTTTCCEEEEETTCSSCCCCSSSCCCCSCCCSSSCCCS
T ss_pred EEECCCCCCeeEEEecCCcEEEccCCCCEeecCCCCCEEec
Confidence 6899999999877 2478899888877654444443
No 176
>2iyb_E Testin, TESS, TES; LIM domain, SH3-binding, tumour supressor LIM domain EVH1 DO cell motility, phosphorylation, cytoskeleton; 2.35A {Homo sapiens}
Probab=27.68 E-value=17 Score=23.99 Aligned_cols=39 Identities=28% Similarity=0.617 Sum_probs=25.8
Q ss_pred CCcchhhhhcccCCceeEeccCCccC--hhhHHHHhccCCCcCCCCCccccc
Q 026787 152 HCPICYEYLFDSLRNTTVMKCGHTMH--CECYHEMIKRDKYCCPICSKSVID 201 (233)
Q Consensus 152 ~CpICle~lf~s~~~v~~LpCGH~~H--~~C~~~~~~~~~~~CPiCrksi~d 201 (233)
.|+-|.+.+....+.+..+ |..+| ..|| +|-.|++++.+
T Consensus 4 ~C~~C~~~I~~~~~~v~a~--~~~wH~~~~CF---------~C~~C~~~L~~ 44 (65)
T 2iyb_E 4 VCQGCHNAIDPEVQRVTYN--NFSWHASTECF---------LCSCCSKCLIG 44 (65)
T ss_dssp ECTTTSSEECTTSCEEEET--TEEEETTTTTS---------BCTTTCCBCTT
T ss_pred CCcCCCCeeccCceEEEEC--CCccCCCCCCE---------ECCCCCCcCCC
Confidence 4788888766432333333 78888 7775 67778888753
No 177
>1x4s_A Protein FON, zinc finger HIT domain containing protein 2; structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.85.1.2
Probab=27.50 E-value=20 Score=24.65 Aligned_cols=23 Identities=26% Similarity=0.690 Sum_probs=14.1
Q ss_pred eeecCCCCcc--ccccCcCCCCCCC
Q 026787 65 QVICSVCDTE--QPVAQVCTNCGVN 87 (233)
Q Consensus 65 ~v~C~~C~~~--q~~~~~C~~Cg~~ 87 (233)
+.+|..|... ++..-+||.|+..
T Consensus 11 ~~~C~vC~~~~~~~akY~CPrC~~r 35 (59)
T 1x4s_A 11 AGPCGFCPAGEVQPARYTCPRCNAP 35 (59)
T ss_dssp CEEECSSCTTCCEEECEECTTTCCE
T ss_pred CCcCcCCCCCcCCCccccCcCCCCC
Confidence 5678888752 3445566666643
No 178
>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=27.49 E-value=7.9 Score=27.41 Aligned_cols=50 Identities=18% Similarity=0.405 Sum_probs=31.0
Q ss_pred CCCCCcchhhhhcccCCceeEe--ccCCccChhhHHHHhc--------cCCCcCCCCCcccc
Q 026787 149 MHHHCPICYEYLFDSLRNTTVM--KCGHTMHCECYHEMIK--------RDKYCCPICSKSVI 200 (233)
Q Consensus 149 ~~~~CpICle~lf~s~~~v~~L--pCGH~~H~~C~~~~~~--------~~~~~CPiCrksi~ 200 (233)
....| ||... .+...-|.-= .|..+||..|+.--.. ...|.||.|+....
T Consensus 15 ~~~~C-iC~~~-~~~g~MI~CD~~~C~~W~H~~CVgi~~~~~~~~~~~~~~~~C~~C~~~~~ 74 (78)
T 1wew_A 15 IKVRC-VCGNS-LETDSMIQCEDPRCHVWQHVGCVILPDKPMDGNPPLPESFYCEICRLTSG 74 (78)
T ss_dssp CCCCC-SSCCC-CCCSCEEECSSTTTCCEEEHHHHSCCCTTTCSCSCSCSSCCCHHHHHCCS
T ss_pred CCEEe-ECCCc-CCCCCEEEECCccCCccccCEEEccccccccccccCCCCEECCCCCcccC
Confidence 34567 78876 2322222222 6999999999963221 13799999986543
No 179
>2xzm_6 RPS27E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_6
Probab=27.10 E-value=24 Score=25.78 Aligned_cols=36 Identities=17% Similarity=0.392 Sum_probs=25.9
Q ss_pred ceeecCCCCccccc------cCcCCCCCCCcceeecCccccc
Q 026787 64 KQVICSVCDTEQPV------AQVCTNCGVNMGEYFCDICKFY 99 (233)
Q Consensus 64 ~~v~C~~C~~~q~~------~~~C~~Cg~~f~~Y~C~~C~l~ 99 (233)
-.|.|..|..+|.+ ...|..||..+++-.=.+-+|-
T Consensus 31 m~VkCp~C~n~q~VFShA~t~V~C~~Cg~~L~~PTGGKA~l~ 72 (81)
T 2xzm_6 31 MDVKCAQCQNIQMIFSNAQSTIICEKCSAILCKPTGGKVQIQ 72 (81)
T ss_dssp EEEECSSSCCEEEEETTCSSCEECSSSCCEEEEECSSCEEEC
T ss_pred EEeECCCCCCeeEEEecCccEEEccCCCCEEeecCCCCeEec
Confidence 47899999999877 2468888888877654444443
No 180
>2v3b_B Rubredoxin 2, rubredoxin; alkane degradation, iron-sulfur protein, oxidoreductase, ELE transfer, electron transport, FAD, NAD, iron; HET: FAD; 2.45A {Pseudomonas aeruginosa}
Probab=27.06 E-value=34 Score=22.85 Aligned_cols=14 Identities=43% Similarity=1.196 Sum_probs=9.2
Q ss_pred cceeecCcccc-ccC
Q 026787 88 MGEYFCDICKF-YDD 101 (233)
Q Consensus 88 f~~Y~C~~C~l-~d~ 101 (233)
|.+|.|.+|-+ ||.
T Consensus 1 m~~y~C~~CGyvYd~ 15 (55)
T 2v3b_B 1 MRKWQCVVCGFIYDE 15 (55)
T ss_dssp CCEEEETTTCCEEET
T ss_pred CCcEEeCCCCeEECC
Confidence 45788888854 443
No 181
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=26.75 E-value=51 Score=24.16 Aligned_cols=49 Identities=27% Similarity=0.443 Sum_probs=29.9
Q ss_pred CCcchhhhhcccCCceeEeccCCccChhhHHHHhcc--CCCcCCCCCccccch
Q 026787 152 HCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKR--DKYCCPICSKSVIDM 202 (233)
Q Consensus 152 ~CpICle~lf~s~~~v~~LpCGH~~H~~C~~~~~~~--~~~~CPiCrksi~dm 202 (233)
.| ||... .+...-+.-=.|.-+||..|+..=+.. ..+.||.|+..-.+.
T Consensus 30 rC-iC~~~-~~~~~mi~Cd~C~~w~H~~C~~~~~~~~p~~w~C~~C~~~~~~~ 80 (98)
T 2lv9_A 30 RC-ICGFT-HDDGYMICCDKCSVWQHIDCMGIDRQHIPDTYLCERCQPRNLDK 80 (98)
T ss_dssp CC-TTSCC-SCSSCEEEBTTTCBEEETTTTTCCTTSCCSSBCCTTTSSSCCCH
T ss_pred Ee-ECCCc-cCCCcEEEcCCCCCcCcCcCCCCCccCCCCCEECCCCcCCCCCH
Confidence 46 77654 222221222258899999999653221 368999998665543
No 182
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=26.44 E-value=68 Score=21.07 Aligned_cols=23 Identities=35% Similarity=0.996 Sum_probs=14.7
Q ss_pred CCCCcceeCCccceeeccccCcccc
Q 026787 111 DDCGICRIGGRENYFHCKRCGSCYS 135 (233)
Q Consensus 111 ~~CgiCR~G~~~~~fHC~~C~~C~s 135 (233)
+.|.+|+.|| +..-|+.|..-+-
T Consensus 6 ~~C~vC~~~g--~ll~Cd~C~~~fH 28 (60)
T 2puy_A 6 DFCSVCRKSG--QLLMCDTCSRVYH 28 (60)
T ss_dssp SSCTTTCCCS--SCEECSSSSCEEC
T ss_pred CCCcCCCCCC--cEEEcCCCCcCEE
Confidence 3577777664 5777777775443
No 183
>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}
Probab=32.31 E-value=14 Score=18.67 Aligned_cols=15 Identities=33% Similarity=0.791 Sum_probs=11.1
Q ss_pred CCcCCCCCccccchh
Q 026787 189 KYCCPICSKSVIDMS 203 (233)
Q Consensus 189 ~~~CPiCrksi~dm~ 203 (233)
.|.|++|.+++...+
T Consensus 2 p~~C~~C~k~f~~~~ 16 (26)
T 2lvu_A 2 PYVCERCGKRFVQSS 16 (26)
Confidence 378999998887543
No 184
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=26.22 E-value=38 Score=22.61 Aligned_cols=10 Identities=20% Similarity=0.365 Sum_probs=5.2
Q ss_pred CCCCcchhhh
Q 026787 150 HHHCPICYEY 159 (233)
Q Consensus 150 ~~~CpICle~ 159 (233)
+-.|+-|...
T Consensus 52 ~W~C~~C~~~ 61 (66)
T 2yt5_A 52 KWLCRQCVFA 61 (66)
T ss_dssp CCCCHHHHHT
T ss_pred CEECCCCcCc
Confidence 3456666543
No 185
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=25.91 E-value=25 Score=28.37 Aligned_cols=47 Identities=17% Similarity=0.452 Sum_probs=31.1
Q ss_pred CCCCCcchhhhhcccCCceeEeccCCccChhhHHHHhcc---CCCcCCCCCccc
Q 026787 149 MHHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKR---DKYCCPICSKSV 199 (233)
Q Consensus 149 ~~~~CpICle~lf~s~~~v~~LpCGH~~H~~C~~~~~~~---~~~~CPiCrksi 199 (233)
.+..|.||.+. .+-+.-=.|.-.||..|+..-+.. +...||.|+...
T Consensus 3 ~~~~C~~C~~~----g~ll~Cd~C~~~~H~~C~~p~l~~~p~~~W~C~~C~~~~ 52 (184)
T 3o36_A 3 NEDWCAVCQNG----GELLCCEKCPKVFHLSCHVPTLTNFPSGEWICTFCRDLS 52 (184)
T ss_dssp SCSSCTTTCCC----SSCEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSS
T ss_pred CCCccccCCCC----CeeeecCCCCcccCccccCCCCCCCCCCCEECccccCcc
Confidence 35668899853 121111257899999998765542 468899998754
No 186
>2elx_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=25.85 E-value=27 Score=18.75 Aligned_cols=17 Identities=29% Similarity=0.778 Sum_probs=13.2
Q ss_pred CCCcCCCCCccccchhH
Q 026787 188 DKYCCPICSKSVIDMSR 204 (233)
Q Consensus 188 ~~~~CPiCrksi~dm~~ 204 (233)
..|.|++|.+++...+.
T Consensus 6 k~~~C~~C~k~f~~~~~ 22 (35)
T 2elx_A 6 SGYVCALCLKKFVSSIR 22 (35)
T ss_dssp CSEECSSSCCEESSHHH
T ss_pred CCeECCCCcchhCCHHH
Confidence 35899999999886443
No 187
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B
Probab=25.75 E-value=94 Score=21.32 Aligned_cols=25 Identities=16% Similarity=0.608 Sum_probs=15.2
Q ss_pred CCCcceeCC-ccceeeccccCccccc
Q 026787 112 DCGICRIGG-RENYFHCKRCGSCYST 136 (233)
Q Consensus 112 ~CgiCR~G~-~~~~fHC~~C~~C~s~ 136 (233)
.|.||+.+. ..+..-|+.|..-+-+
T Consensus 20 ~C~~C~~~~~~~~ll~CD~C~~~yH~ 45 (70)
T 3asl_A 20 ACHLCGGRQDPDKQLMCDECDMAFHI 45 (70)
T ss_dssp SBTTTCCCSCGGGEEECTTTCCEEEG
T ss_pred CCcCCCCcCCCCCEEEcCCCCCceec
Confidence 445665543 4578888888654433
No 188
>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=25.60 E-value=32 Score=23.24 Aligned_cols=37 Identities=22% Similarity=0.465 Sum_probs=21.1
Q ss_pred CCCcchhhhhcccCCceeEeccCCccChhhHHHHhccCCCcCCCCCcccc
Q 026787 151 HHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVI 200 (233)
Q Consensus 151 ~~CpICle~lf~s~~~v~~LpCGH~~H~~C~~~~~~~~~~~CPiCrksi~ 200 (233)
..|+-|.+.+.. +.+ ..=|..+|..|| +|-.|+++|.
T Consensus 6 ~~C~~C~~~I~~--~~v--~a~~~~wH~~CF---------~C~~C~~~L~ 42 (73)
T 1wig_A 6 SGCDSCEKYITG--RVL--EAGEKHYHPSCA---------LCVRCGQMFA 42 (73)
T ss_dssp CSCSSSCCCCSS--CCB--CCSSCCBCTTTS---------CCSSSCCCCC
T ss_pred CCcccCCCEecC--eeE--EeCCCCCCCCcC---------EeCCCCCCCC
Confidence 456777766543 122 233667776654 5666777665
No 189
>3o7a_A PHD finger protein 13 variant; PHF13, zinc finger, PHD domain, nuclear protein, structural structural genomics consortium, SGC, protein binding; HET: M3L; 1.67A {Homo sapiens}
Probab=25.19 E-value=5.3 Score=26.08 Aligned_cols=29 Identities=21% Similarity=0.511 Sum_probs=20.7
Q ss_pred eccCCccChhhHHHHhc--cCCCcCCCCCcc
Q 026787 170 MKCGHTMHCECYHEMIK--RDKYCCPICSKS 198 (233)
Q Consensus 170 LpCGH~~H~~C~~~~~~--~~~~~CPiCrks 198 (233)
-.|.-.||..|+.--.. ...|.||.|+.|
T Consensus 22 d~C~~W~H~~Cvgi~~~~~~~~~~C~~C~~S 52 (52)
T 3o7a_A 22 NECHTWIHLSCAKIRKSNVPEVFVCQKCRDS 52 (52)
T ss_dssp TTTCCEEETTTTTCCGGGCCSSCCCHHHHTC
T ss_pred CCCCccccccccCCCcccCCCcEECcCCCCc
Confidence 36899999999964321 146889988754
No 190
>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}
Probab=30.97 E-value=15 Score=18.94 Aligned_cols=16 Identities=25% Similarity=0.555 Sum_probs=11.7
Q ss_pred CCcCCCCCccccchhH
Q 026787 189 KYCCPICSKSVIDMSR 204 (233)
Q Consensus 189 ~~~CPiCrksi~dm~~ 204 (233)
.|.|++|.+++...+.
T Consensus 2 ~~~C~~C~k~f~~~~~ 17 (29)
T 2lvt_A 2 PCQCVMCGKAFTQASS 17 (29)
Confidence 3789999998875443
No 191
>1v5n_A PDI-like hypothetical protein AT1G60420; DC1 domain, zinc binding domain, PDI-like protein, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.49.1.3
Probab=25.07 E-value=34 Score=24.81 Aligned_cols=10 Identities=30% Similarity=0.893 Sum_probs=6.0
Q ss_pred ceeeccccCc
Q 026787 123 NYFHCKRCGS 132 (233)
Q Consensus 123 ~~fHC~~C~~ 132 (233)
-+|+|..|+.
T Consensus 60 ~~Y~C~~C~f 69 (89)
T 1v5n_A 60 WSYHCDECDF 69 (89)
T ss_dssp CEEECTTTCC
T ss_pred cEEEcCCCCC
Confidence 4666666654
No 192
>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=24.82 E-value=66 Score=18.56 Aligned_cols=19 Identities=21% Similarity=0.288 Sum_probs=14.4
Q ss_pred CCCcCCCCCccccchhHHh
Q 026787 188 DKYCCPICSKSVIDMSRTW 206 (233)
Q Consensus 188 ~~~~CPiCrksi~dm~~~~ 206 (233)
..|.|++|.+++...+.+-
T Consensus 11 k~~~C~~C~k~f~~~~~L~ 29 (46)
T 2emz_A 11 RPFKCNECGKGFGRRSHLA 29 (46)
T ss_dssp CSCCCSSSCCCCSSHHHHH
T ss_pred CCeECCCCCcccCCHHHHH
Confidence 3689999999998655443
No 193
>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=24.78 E-value=29 Score=18.93 Aligned_cols=17 Identities=18% Similarity=0.385 Sum_probs=13.0
Q ss_pred CCCcCCCCCccccchhH
Q 026787 188 DKYCCPICSKSVIDMSR 204 (233)
Q Consensus 188 ~~~~CPiCrksi~dm~~ 204 (233)
..|.|++|.+.+...+.
T Consensus 8 k~~~C~~C~k~f~~~~~ 24 (36)
T 2els_A 8 KIFTCEYCNKVFKFKHS 24 (36)
T ss_dssp CCEECTTTCCEESSHHH
T ss_pred CCEECCCCCceeCCHHH
Confidence 35899999999876443
No 194
>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=24.52 E-value=40 Score=18.96 Aligned_cols=18 Identities=28% Similarity=0.672 Sum_probs=13.8
Q ss_pred CCCcCCCCCccccchhHH
Q 026787 188 DKYCCPICSKSVIDMSRT 205 (233)
Q Consensus 188 ~~~~CPiCrksi~dm~~~ 205 (233)
..+.|++|.+++...+.+
T Consensus 9 k~~~C~~C~k~f~~~~~L 26 (42)
T 2yte_A 9 KPYSCAECKETFSDNNRL 26 (42)
T ss_dssp CSCBCTTTCCBCSSHHHH
T ss_pred CCeECCCCCCccCCHHHH
Confidence 458999999999865443
No 195
>1m3v_A FLIN4, fusion of the LIM interacting domain of LDB1 and the N-terminal LIM domain of LMO4...; fusion protein, LMO proteins, metal binding protein; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=24.35 E-value=54 Score=24.38 Aligned_cols=48 Identities=15% Similarity=0.124 Sum_probs=32.8
Q ss_pred CCcchhhhhcccCCceeEeccCCccChhhHHHHhccCCCcCCCCCccccc
Q 026787 152 HCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVID 201 (233)
Q Consensus 152 ~CpICle~lf~s~~~v~~LpCGH~~H~~C~~~~~~~~~~~CPiCrksi~d 201 (233)
.|..|...|.+.. ..-...=|-.+...|+.+.+. ...+|-.|++.|..
T Consensus 34 ~C~~C~~~L~~~~-~~~~~~~g~~yC~~cy~~~f~-~~~~C~~C~~~I~~ 81 (122)
T 1m3v_A 34 KCSSCQAQLGDIG-TSSYTKSGMILCRNDYIRLFG-NSGAGGSGGHMGSG 81 (122)
T ss_dssp CCSSSCCCTTTSE-ECCEEETTEEECHHHHHHHHC-CCCSSSCSSCCSCC
T ss_pred CcCCCCCcccccC-CeEEEECCeeecHHHHHHHcC-CCCccccCCCCcCc
Confidence 6888887764211 112344577888999988775 23489999999985
No 196
>2elv_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=24.33 E-value=29 Score=18.91 Aligned_cols=17 Identities=24% Similarity=0.456 Sum_probs=13.1
Q ss_pred CCCcCCCCCccccchhH
Q 026787 188 DKYCCPICSKSVIDMSR 204 (233)
Q Consensus 188 ~~~~CPiCrksi~dm~~ 204 (233)
..|.|++|.+++...+.
T Consensus 8 k~~~C~~C~k~f~~~~~ 24 (36)
T 2elv_A 8 LLYDCHICERKFKNELD 24 (36)
T ss_dssp CCEECSSSCCEESSHHH
T ss_pred CCeECCCCCCccCCHHH
Confidence 35899999999876543
No 197
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=24.27 E-value=41 Score=22.91 Aligned_cols=40 Identities=20% Similarity=0.371 Sum_probs=28.7
Q ss_pred CCCCCcchhhhhcccCCceeEeccCCccChhhHHHHhccCCCcCCCCCccccc
Q 026787 149 MHHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVID 201 (233)
Q Consensus 149 ~~~~CpICle~lf~s~~~v~~LpCGH~~H~~C~~~~~~~~~~~CPiCrksi~d 201 (233)
....|+.|.+.+.. +.+ ..=|..+|..|| +|-.|++.|.+
T Consensus 14 ~~~~C~~C~~~I~~--~~~--~a~~~~~H~~CF---------~C~~C~~~L~~ 53 (79)
T 1x62_A 14 KLPMCDKCGTGIVG--VFV--KLRDRHRHPECY---------VCTDCGTNLKQ 53 (79)
T ss_dssp CCCCCSSSCCCCCS--SCE--ECSSCEECTTTT---------SCSSSCCCHHH
T ss_pred CCCccccCCCCccC--cEE--EECcceeCcCcC---------eeCCCCCCCCC
Confidence 34679999998764 222 334789998876 68889988853
No 198
>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=23.96 E-value=40 Score=19.08 Aligned_cols=17 Identities=24% Similarity=0.634 Sum_probs=13.4
Q ss_pred CCCcCCCCCccccchhH
Q 026787 188 DKYCCPICSKSVIDMSR 204 (233)
Q Consensus 188 ~~~~CPiCrksi~dm~~ 204 (233)
..|.|++|.+++...+.
T Consensus 10 k~~~C~~C~k~f~~~~~ 26 (42)
T 2eos_A 10 KPYPCEICGTRFRHLQT 26 (42)
T ss_dssp CCBCCSSSCCCBSSHHH
T ss_pred CCEECCCCCCccCCHHH
Confidence 46899999999886544
No 199
>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, classical zinc finger, transcription; NMR {Homo sapiens}
Probab=29.44 E-value=17 Score=18.71 Aligned_cols=16 Identities=25% Similarity=0.623 Sum_probs=12.0
Q ss_pred CCcCCCCCccccchhH
Q 026787 189 KYCCPICSKSVIDMSR 204 (233)
Q Consensus 189 ~~~CPiCrksi~dm~~ 204 (233)
.+.|++|.+++...+.
T Consensus 3 ~~~C~~C~k~f~~~~~ 18 (30)
T 2lvr_A 3 PYVCIHCQRQFADPGA 18 (30)
Confidence 4789999998875443
No 200
>1ptq_A Protein kinase C delta type; phosphotransferase; 1.95A {Mus musculus} SCOP: g.49.1.1 PDB: 1ptr_A*
Probab=23.25 E-value=46 Score=20.76 Aligned_cols=11 Identities=45% Similarity=1.177 Sum_probs=5.6
Q ss_pred CcCeeccCCCC
Q 026787 104 EKGQFHCDDCG 114 (233)
Q Consensus 104 ~k~~yHC~~Cg 114 (233)
.|+-|.|..||
T Consensus 25 ~~qg~~C~~C~ 35 (50)
T 1ptq_A 25 VKQGLKCEDCG 35 (50)
T ss_dssp SSCEEEETTTC
T ss_pred CCccCEeCCCC
Confidence 34555555554
No 201
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=23.12 E-value=21 Score=25.88 Aligned_cols=50 Identities=24% Similarity=0.561 Sum_probs=32.6
Q ss_pred CCCCCCcchhhhhcccCCceeEe---ccCCccChhhHHHH-hccCCCcCCCCCccc
Q 026787 148 SMHHHCPICYEYLFDSLRNTTVM---KCGHTMHCECYHEM-IKRDKYCCPICSKSV 199 (233)
Q Consensus 148 ~~~~~CpICle~lf~s~~~v~~L---pCGH~~H~~C~~~~-~~~~~~~CPiCrksi 199 (233)
..+..|.||.+.-.+ ..-.+| .|.=.||..|+..- +-.+...||.|....
T Consensus 23 ~~~~~C~vC~~~~s~--~~~~ll~CD~C~~~fH~~Cl~p~~vP~g~W~C~~C~~~~ 76 (88)
T 2l43_A 23 DEDAVCSICMDGESQ--NSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQSR 76 (88)
T ss_dssp CCCCCCSSCCSSSSC--SEEEEEECSSSCCCCCHHHHTCSSCCSSCCCCHHHHHHT
T ss_pred CCCCcCCcCCCCCCC--CCCCEEECCCCCchhhcccCCCCccCCCceECccccCcc
Confidence 345689999975211 222333 57889999999753 333577899887544
No 202
>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=23.09 E-value=31 Score=18.64 Aligned_cols=17 Identities=29% Similarity=0.573 Sum_probs=13.1
Q ss_pred CCCcCCCCCccccchhH
Q 026787 188 DKYCCPICSKSVIDMSR 204 (233)
Q Consensus 188 ~~~~CPiCrksi~dm~~ 204 (233)
..|.|++|.+++...+.
T Consensus 8 k~~~C~~C~k~f~~~~~ 24 (36)
T 2elt_A 8 KPYKCPQCSYASAIKAN 24 (36)
T ss_dssp CSEECSSSSCEESSHHH
T ss_pred CCCCCCCCCcccCCHHH
Confidence 35899999999876443
No 203
>2elq_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=22.85 E-value=32 Score=18.75 Aligned_cols=17 Identities=18% Similarity=0.526 Sum_probs=13.2
Q ss_pred CCCcCCCCCccccchhH
Q 026787 188 DKYCCPICSKSVIDMSR 204 (233)
Q Consensus 188 ~~~~CPiCrksi~dm~~ 204 (233)
..|.|++|.+++...+.
T Consensus 8 k~~~C~~C~k~f~~~~~ 24 (36)
T 2elq_A 8 KPFKCSLCEYATRSKSN 24 (36)
T ss_dssp CSEECSSSSCEESCHHH
T ss_pred CCccCCCCCchhCCHHH
Confidence 35899999999886544
No 204
>1rwj_A Cytochrome C family protein; multiheme cytochrome C, geobacter metallireducens, heme coordination in C-type cytochromes; HET: HEM; 1.70A {Geobacter sulfurreducens} SCOP: a.138.1.1
Probab=22.73 E-value=12 Score=26.83 Aligned_cols=13 Identities=23% Similarity=0.902 Sum_probs=10.1
Q ss_pred CcccCchhHHhhh
Q 026787 34 EIFDCRHCHNEAA 46 (233)
Q Consensus 34 ~~y~Cr~CHde~~ 46 (233)
++|.|..||.++.
T Consensus 28 ~~~~C~~CH~~~f 40 (82)
T 1rwj_A 28 GMYKCNECHTKLF 40 (82)
T ss_dssp TTCCGGGTBTTTB
T ss_pred CCCChhhcccccc
Confidence 3478999999763
No 205
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=22.57 E-value=11 Score=29.97 Aligned_cols=49 Identities=24% Similarity=0.440 Sum_probs=29.4
Q ss_pred CCCCcchhhhhcccCCceeEeccCCccChhhHHHHh----ccCCCcCCCCCccc
Q 026787 150 HHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMI----KRDKYCCPICSKSV 199 (233)
Q Consensus 150 ~~~CpICle~lf~s~~~v~~LpCGH~~H~~C~~~~~----~~~~~~CPiCrksi 199 (233)
..-| ||...-.++..-+.-=.|.-+||..|+.--. ....+.||.|+..-
T Consensus 8 ~~~C-~C~~~~~~~~~mi~Cd~C~~WfH~~Cv~~~~~~~~~~~~~~C~~C~~~~ 60 (174)
T 2ri7_A 8 KLYC-ICKTPEDESKFYIGCDRCQNWYHGRCVGILQSEAELIDEYVCPQCQSTE 60 (174)
T ss_dssp CEET-TTTEECCTTSCEEECTTTCCEEEHHHHTCCHHHHTTCSSCCCHHHHHHH
T ss_pred CcEe-eCCCCCCCCCCEeECCCCCchhChhhcCCchhhccCccCeecCCCcchh
Confidence 3457 7776522222222223578999999995321 12479999998753
No 206
>2yqq_A Zinc finger HIT domain-containing protein 3; structure genomics, ZF-HIT domain, TRIP-3, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=22.39 E-value=41 Score=22.77 Aligned_cols=16 Identities=31% Similarity=0.851 Sum_probs=7.3
Q ss_pred CCCCCCCcceeecCccc
Q 026787 81 CTNCGVNMGEYFCDICK 97 (233)
Q Consensus 81 C~~Cg~~f~~Y~C~~C~ 97 (233)
|.-|+. .++|.|+.|.
T Consensus 15 C~vC~~-~~kY~CPrC~ 30 (56)
T 2yqq_A 15 CVICLE-KPKYRCPACR 30 (56)
T ss_dssp CTTTCS-CCSEECTTTC
T ss_pred cCcCcC-CCeeeCCCCC
Confidence 444444 4444444443
No 207
>4esj_A Type-2 restriction enzyme DPNI; restriction endonuclease-DNA complex, type IIM, type IIE, RE enzyme, DPNI; HET: DNA 6MA; 2.05A {Streptococcus pneumoniae}
Probab=22.36 E-value=38 Score=29.68 Aligned_cols=8 Identities=50% Similarity=1.265 Sum_probs=5.6
Q ss_pred CcCCCCCC
Q 026787 79 QVCTNCGV 86 (233)
Q Consensus 79 ~~C~~Cg~ 86 (233)
..||+||.
T Consensus 35 ~yCPnCG~ 42 (257)
T 4esj_A 35 SYCPNCGN 42 (257)
T ss_dssp CCCTTTCC
T ss_pred CcCCCCCC
Confidence 46777777
No 208
>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=22.22 E-value=47 Score=19.18 Aligned_cols=18 Identities=28% Similarity=0.554 Sum_probs=14.0
Q ss_pred CCCcCCCCCccccchhHH
Q 026787 188 DKYCCPICSKSVIDMSRT 205 (233)
Q Consensus 188 ~~~~CPiCrksi~dm~~~ 205 (233)
..|.|++|.+++...+.+
T Consensus 11 k~~~C~~C~k~F~~~~~L 28 (47)
T 2epx_A 11 KPYECIECGKAFIQNTSL 28 (47)
T ss_dssp CSBCCSSSCCCBSSHHHH
T ss_pred CCEECCccCchhCChHHH
Confidence 368999999999865543
No 209
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=22.17 E-value=46 Score=23.17 Aligned_cols=41 Identities=20% Similarity=0.377 Sum_probs=28.0
Q ss_pred CCCCCCcchhhhhcccCCceeEeccCCccChhhHHHHhccCCCcCCCCCccccc
Q 026787 148 SMHHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVID 201 (233)
Q Consensus 148 ~~~~~CpICle~lf~s~~~v~~LpCGH~~H~~C~~~~~~~~~~~CPiCrksi~d 201 (233)
.....|+.|.+.+.. +. +..=|..+|..|| +|-.|++.|.+
T Consensus 23 ~~~~~C~~C~~~I~~--~~--~~a~~~~~H~~CF---------~C~~C~~~L~~ 63 (89)
T 1x64_A 23 QRMPLCDKCGSGIVG--AV--VKARDKYRHPECF---------VCADCNLNLKQ 63 (89)
T ss_dssp CSCCBCTTTCCBCCS--CC--EESSSCEECTTTC---------CCSSSCCCTTT
T ss_pred CcCCCcccCCCEecc--cE--EEECCceECccCC---------EecCCCCCCCC
Confidence 344579999988764 22 2335788898775 57788888764
No 210
>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=22.16 E-value=48 Score=18.83 Aligned_cols=18 Identities=28% Similarity=0.514 Sum_probs=13.7
Q ss_pred CCCcCCCCCccccchhHH
Q 026787 188 DKYCCPICSKSVIDMSRT 205 (233)
Q Consensus 188 ~~~~CPiCrksi~dm~~~ 205 (233)
..+.|++|.+++...+.+
T Consensus 11 k~~~C~~C~k~f~~~~~L 28 (44)
T 2en7_A 11 KPYVCNECGKAFRSKSYL 28 (44)
T ss_dssp SSSCCTTTCCCCSSHHHH
T ss_pred cCeECCCCCCccCCHHHH
Confidence 368999999998865443
No 211
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=22.12 E-value=62 Score=23.88 Aligned_cols=65 Identities=29% Similarity=0.520 Sum_probs=41.4
Q ss_pred CCCCCCcchhhhhcccCCceeEecc----CCccChhhHHHHhcc----CCCcCCCCCccccc-hhHHhhhhHHHHHhC
Q 026787 148 SMHHHCPICYEYLFDSLRNTTVMKC----GHTMHCECYHEMIKR----DKYCCPICSKSVID-MSRTWKRIDEEIEAT 216 (233)
Q Consensus 148 ~~~~~CpICle~lf~s~~~v~~LpC----GH~~H~~C~~~~~~~----~~~~CPiCrksi~d-m~~~~~~lD~~i~~~ 216 (233)
+....|.+|.|.|.++ .+..| +|-|.-.|-++.++. ...-||.=.|-.+. -..-|.-+.-||+.+
T Consensus 13 ~a~l~CtlC~erLEdt----HFVQCPsv~~HkFCFpCsr~sIk~q~~~~EvyCPSG~kCpL~gS~~PWAFmqgEIatI 86 (93)
T 2cs3_A 13 SGPLCCTICHERLEDT----HFVQCPSVPSHKFCFPCSRESIKAQGATGEVYCPSGEKCPLVGSNVPWAFMQGEIATI 86 (93)
T ss_dssp CCSCCCSSSCSCCSST----TSEECSSCSSCEECHHHHHHHHHHHHSSSCCCCTTSSCCBCSSSSSBCCCCHHHHHHH
T ss_pred CCeeEeecchhhhccC----ceeeCCCccCCeeeccccHHHHHhcCCCCcEECCCCCccccCCCcCchHHHhhHHHHH
Confidence 4456799999998654 45666 799999999999874 12234443333221 122477777777654
No 212
>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=22.10 E-value=44 Score=19.45 Aligned_cols=18 Identities=28% Similarity=0.564 Sum_probs=13.8
Q ss_pred CCCcCCCCCccccchhHH
Q 026787 188 DKYCCPICSKSVIDMSRT 205 (233)
Q Consensus 188 ~~~~CPiCrksi~dm~~~ 205 (233)
..|.|++|.+++...+.+
T Consensus 11 k~~~C~~C~k~f~~~~~L 28 (46)
T 2eon_A 11 KPYKCQVCGKAFRVSSHL 28 (46)
T ss_dssp CSCBCSSSCCBCSSHHHH
T ss_pred cccCCCCCCcccCcHHHH
Confidence 468999999998865443
No 213
>1wfp_A Zinc finger (AN1-like) family protein; ZF-AN1 domain, zinc binding, structural genomics, riken structural genomics/proteomics initiative; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=22.05 E-value=51 Score=23.65 Aligned_cols=30 Identities=30% Similarity=0.649 Sum_probs=19.7
Q ss_pred cceeCCccceeeccccC--ccccccccccceee
Q 026787 115 ICRIGGRENYFHCKRCG--SCYSTSLRNNHLCI 145 (233)
Q Consensus 115 iCR~G~~~~~fHC~~C~--~C~s~~l~~~H~C~ 145 (233)
.||...+---|.| +|| .|..-.+.+.|.|.
T Consensus 30 ~C~kkvgL~~f~C-rCg~~FCs~HRy~e~H~C~ 61 (74)
T 1wfp_A 30 SCNKKVGVTGFKC-RCGSTFCGTHRYPESHECQ 61 (74)
T ss_dssp SSCCBCTTTCEEC-TTSCEECTTTCSTTTSCCC
T ss_pred hhcCcccccceEe-ccCCEeccccCCCcCCCCc
Confidence 4544322225888 787 67777777888885
No 214
>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription; NMR {Mus musculus} SCOP: g.37.1.1
Probab=21.76 E-value=35 Score=18.32 Aligned_cols=17 Identities=18% Similarity=0.567 Sum_probs=13.1
Q ss_pred CCCcCCCCCccccchhH
Q 026787 188 DKYCCPICSKSVIDMSR 204 (233)
Q Consensus 188 ~~~~CPiCrksi~dm~~ 204 (233)
..|.|++|.+++...+.
T Consensus 6 k~~~C~~C~k~f~~~~~ 22 (35)
T 1srk_A 6 RPFVCRICLSAFTTKAN 22 (35)
T ss_dssp SCEECSSSCCEESSHHH
T ss_pred cCeeCCCCCcccCCHHH
Confidence 35899999999876443
No 215
>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=21.51 E-value=48 Score=19.15 Aligned_cols=19 Identities=37% Similarity=0.592 Sum_probs=14.5
Q ss_pred CCCcCCCCCccccchhHHh
Q 026787 188 DKYCCPICSKSVIDMSRTW 206 (233)
Q Consensus 188 ~~~~CPiCrksi~dm~~~~ 206 (233)
..+.|++|.+++...+.+-
T Consensus 11 ~~~~C~~C~k~f~~~~~L~ 29 (46)
T 2eoq_A 11 KPFKCDICGKSFCGRSRLN 29 (46)
T ss_dssp CSCCCSSSCCCCSSHHHHH
T ss_pred CCcCCCcCCchhCCHHHHH
Confidence 4689999999998655433
No 216
>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=21.47 E-value=49 Score=19.10 Aligned_cols=18 Identities=28% Similarity=0.586 Sum_probs=13.9
Q ss_pred CCCcCCCCCccccchhHH
Q 026787 188 DKYCCPICSKSVIDMSRT 205 (233)
Q Consensus 188 ~~~~CPiCrksi~dm~~~ 205 (233)
..+.|++|.+++...+.+
T Consensus 11 k~~~C~~C~k~f~~~~~L 28 (46)
T 2eq2_A 11 KPYQCNECGKAFSQTSKL 28 (46)
T ss_dssp CSSSCCSSCCCCSSHHHH
T ss_pred CCeECCCCCcccCCHHHH
Confidence 468999999999865443
No 217
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2
Probab=21.32 E-value=11 Score=26.29 Aligned_cols=47 Identities=21% Similarity=0.417 Sum_probs=29.1
Q ss_pred CCCCcchhhhhcccCCceeEeccCCccChhhHHHHh--------ccCCCcCCCCCcc
Q 026787 150 HHHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMI--------KRDKYCCPICSKS 198 (233)
Q Consensus 150 ~~~CpICle~lf~s~~~v~~LpCGH~~H~~C~~~~~--------~~~~~~CPiCrks 198 (233)
..-| ||..... ...-+.--.|.-+||..|+.--. ....|.||.|++.
T Consensus 16 ~~~C-~C~~~~~-~~~MI~Cd~C~~WfH~~Cvgl~~~~~~~l~~~~~~~~C~~C~~~ 70 (76)
T 1wem_A 16 ALYC-ICRQPHN-NRFMICCDRCEEWFHGDCVGISEARGRLLERNGEDYICPNCTIL 70 (76)
T ss_dssp CCCS-TTCCCCC-SSCEEECSSSCCEEEHHHHSCCHHHHHHHHHHTCCCCCHHHHHH
T ss_pred CCEE-ECCCccC-CCCEEEeCCCCCcEeCeEEccchhhhhhccCCCCeEECcCCcCc
Confidence 3456 7887632 22223333689999999985321 1247999999754
No 218
>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=21.26 E-value=60 Score=18.84 Aligned_cols=19 Identities=32% Similarity=0.415 Sum_probs=13.9
Q ss_pred CCCcCCCCCccccchhHHh
Q 026787 188 DKYCCPICSKSVIDMSRTW 206 (233)
Q Consensus 188 ~~~~CPiCrksi~dm~~~~ 206 (233)
..|.|++|.|++...+.+-
T Consensus 11 k~~~C~~C~k~f~~~~~L~ 29 (46)
T 2ytm_A 11 KPYKCMECGKAFGDNSSCT 29 (46)
T ss_dssp CSSSBTTTTBCCSSHHHHH
T ss_pred CCcCCCCCCchhCCHHHHH
Confidence 3588999999888655443
No 219
>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ysv_A
Probab=21.21 E-value=49 Score=19.17 Aligned_cols=20 Identities=20% Similarity=0.471 Sum_probs=15.1
Q ss_pred CCCcCCCCCccccchhHHhh
Q 026787 188 DKYCCPICSKSVIDMSRTWK 207 (233)
Q Consensus 188 ~~~~CPiCrksi~dm~~~~~ 207 (233)
..+.|++|.+++...+.+.+
T Consensus 11 k~~~C~~C~k~F~~~~~L~~ 30 (46)
T 2emk_A 11 KPYECKECGKAFSQTTHLIQ 30 (46)
T ss_dssp CSCBCSSSCCBCSCHHHHHH
T ss_pred CceECCCCCchhCCHHHHHH
Confidence 46899999999987555443
No 220
>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=21.08 E-value=50 Score=19.08 Aligned_cols=17 Identities=29% Similarity=0.548 Sum_probs=13.4
Q ss_pred CCCcCCCCCccccchhH
Q 026787 188 DKYCCPICSKSVIDMSR 204 (233)
Q Consensus 188 ~~~~CPiCrksi~dm~~ 204 (233)
..|.|++|.+++...+.
T Consensus 11 k~~~C~~C~k~F~~~~~ 27 (46)
T 2enf_A 11 KPYKCNECGKVFTQNSH 27 (46)
T ss_dssp CSCBCSSSCCBCSSHHH
T ss_pred cCeECCCCCcccCCHHH
Confidence 46899999999886543
No 221
>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=21.04 E-value=51 Score=18.98 Aligned_cols=17 Identities=29% Similarity=0.638 Sum_probs=13.4
Q ss_pred CCCcCCCCCccccchhH
Q 026787 188 DKYCCPICSKSVIDMSR 204 (233)
Q Consensus 188 ~~~~CPiCrksi~dm~~ 204 (233)
..+.|++|.+++...+.
T Consensus 11 k~~~C~~C~k~f~~~~~ 27 (46)
T 2ytr_A 11 KPYKCNECGKAFSQTSK 27 (46)
T ss_dssp CTTCCTTTCCCCSSHHH
T ss_pred cCcCCCCCCCccCCHHH
Confidence 46899999999886543
No 222
>2elo_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=20.92 E-value=37 Score=18.51 Aligned_cols=17 Identities=35% Similarity=0.835 Sum_probs=13.3
Q ss_pred CCCcCCCCCccccchhH
Q 026787 188 DKYCCPICSKSVIDMSR 204 (233)
Q Consensus 188 ~~~~CPiCrksi~dm~~ 204 (233)
..|.|++|.+++...+.
T Consensus 8 k~~~C~~C~k~f~~~~~ 24 (37)
T 2elo_A 8 RSYSCPVCEKSFSEDRL 24 (37)
T ss_dssp CCCEETTTTEECSSHHH
T ss_pred CCcCCCCCCCccCCHHH
Confidence 35899999999886543
No 223
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3, LIM-domain protein DRAL, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=20.88 E-value=40 Score=22.16 Aligned_cols=38 Identities=21% Similarity=0.503 Sum_probs=23.8
Q ss_pred CCCcchhhhhcccCCceeEeccCCccChhhHHHHhccCCCcCCCCCccccc
Q 026787 151 HHCPICYEYLFDSLRNTTVMKCGHTMHCECYHEMIKRDKYCCPICSKSVID 201 (233)
Q Consensus 151 ~~CpICle~lf~s~~~v~~LpCGH~~H~~C~~~~~~~~~~~CPiCrksi~d 201 (233)
..|+.|.+.+.+ +.+ ..=|..+|..|| +|-.|+++|.+
T Consensus 6 ~~C~~C~~~I~~--~~~--~a~~~~~H~~CF---------~C~~C~~~L~~ 43 (70)
T 2d8z_A 6 SGCVQCKKPITT--GGV--TYREQPWHKECF---------VCTACRKQLSG 43 (70)
T ss_dssp CBCSSSCCBCCS--SEE--ESSSSEEETTTS---------BCSSSCCBCTT
T ss_pred CCCcccCCeecc--ceE--EECccccCCCCC---------ccCCCCCcCCc
Confidence 457778777653 222 234777887665 57778877753
No 224
>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=20.79 E-value=51 Score=18.96 Aligned_cols=19 Identities=37% Similarity=0.478 Sum_probs=14.3
Q ss_pred CCCcCCCCCccccchhHHh
Q 026787 188 DKYCCPICSKSVIDMSRTW 206 (233)
Q Consensus 188 ~~~~CPiCrksi~dm~~~~ 206 (233)
..+.|++|.+++...+.+-
T Consensus 11 ~~~~C~~C~k~f~~~~~L~ 29 (46)
T 2eov_A 11 KPYKCSDCGKSFTWKSRLR 29 (46)
T ss_dssp CSCBCSSSCCBCSSHHHHH
T ss_pred CCccCCccChhhCCHHHHH
Confidence 4689999999998655433
No 225
>3p8b_A DNA-directed RNA polymerase, subunit E''; transcription elongation factor, RNA polymerase, transferase transcription complex; 1.80A {Pyrococcus furiosus}
Probab=20.78 E-value=40 Score=24.61 Aligned_cols=22 Identities=23% Similarity=0.588 Sum_probs=17.0
Q ss_pred eeecCCCCccccccCcCCCCCCC
Q 026787 65 QVICSVCDTEQPVAQVCTNCGVN 87 (233)
Q Consensus 65 ~v~C~~C~~~q~~~~~C~~Cg~~ 87 (233)
.--|..|+..++.. .||+||..
T Consensus 23 ~rAC~~C~~v~~~d-~CPnCgs~ 44 (81)
T 3p8b_A 23 EKACRHCHYITSED-RCPVCGSR 44 (81)
T ss_dssp CEEETTTCBEESSS-SCTTTCCC
T ss_pred HHHHhhCCCccCCC-CCCCCCCC
Confidence 44699999988664 69999863
No 226
>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=20.77 E-value=52 Score=18.93 Aligned_cols=18 Identities=28% Similarity=0.259 Sum_probs=13.8
Q ss_pred CCCcCCCCCccccchhHH
Q 026787 188 DKYCCPICSKSVIDMSRT 205 (233)
Q Consensus 188 ~~~~CPiCrksi~dm~~~ 205 (233)
..+.|++|.+++...+.+
T Consensus 11 ~~~~C~~C~k~f~~~~~L 28 (46)
T 2eop_A 11 KPHECRECGKSFSFNSQL 28 (46)
T ss_dssp CSCBCTTTCCBCSSHHHH
T ss_pred CCeeCCCCCchhCCHHHH
Confidence 468999999999865443
No 227
>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=20.64 E-value=52 Score=18.98 Aligned_cols=17 Identities=18% Similarity=0.573 Sum_probs=13.3
Q ss_pred CCCcCCCCCccccchhH
Q 026787 188 DKYCCPICSKSVIDMSR 204 (233)
Q Consensus 188 ~~~~CPiCrksi~dm~~ 204 (233)
..+.|++|.+++...+.
T Consensus 11 k~~~C~~C~k~f~~~~~ 27 (46)
T 2emg_A 11 NPFICSECGKVFTHKTN 27 (46)
T ss_dssp CSCBCTTTCCBCSSHHH
T ss_pred CCEECCccCcccCCHHH
Confidence 35899999999886544
No 228
>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=20.62 E-value=52 Score=19.08 Aligned_cols=18 Identities=28% Similarity=0.669 Sum_probs=14.0
Q ss_pred CCCcCCCCCccccchhHH
Q 026787 188 DKYCCPICSKSVIDMSRT 205 (233)
Q Consensus 188 ~~~~CPiCrksi~dm~~~ 205 (233)
..|.|++|.+++...+.+
T Consensus 11 k~~~C~~C~k~f~~~~~L 28 (46)
T 2eoh_A 11 KPYECKECRKTFIQIGHL 28 (46)
T ss_dssp CSCCCSSSCCCCSSHHHH
T ss_pred CCcCCCCcCchhCCHHHH
Confidence 468999999999865443
No 229
>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens}
Probab=20.47 E-value=53 Score=18.94 Aligned_cols=18 Identities=17% Similarity=0.366 Sum_probs=13.9
Q ss_pred CCCcCCCCCccccchhHH
Q 026787 188 DKYCCPICSKSVIDMSRT 205 (233)
Q Consensus 188 ~~~~CPiCrksi~dm~~~ 205 (233)
..+.|++|.+++...+.+
T Consensus 11 k~~~C~~C~k~F~~~~~L 28 (46)
T 2em0_A 11 KTWKCRECDMCFSQASSL 28 (46)
T ss_dssp CCCCCSSSCCCCSSHHHH
T ss_pred cCeECCCCCcccCCHHHH
Confidence 458999999999865543
No 230
>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1
Probab=20.43 E-value=52 Score=18.99 Aligned_cols=17 Identities=29% Similarity=0.548 Sum_probs=13.4
Q ss_pred CCCcCCCCCccccchhH
Q 026787 188 DKYCCPICSKSVIDMSR 204 (233)
Q Consensus 188 ~~~~CPiCrksi~dm~~ 204 (233)
..+.|++|.+++...+.
T Consensus 11 k~~~C~~C~k~F~~~~~ 27 (46)
T 2yti_A 11 KPYKCNECGKVFTQNSH 27 (46)
T ss_dssp CTTCCSSSCCCCSSHHH
T ss_pred cCeECCCCCcccCChhH
Confidence 46899999999886443
No 231
>2fnf_X Putative RAS effector NORE1; zinc, signal transduction, apoptosis, cysteine rich domain; NMR {Mus musculus}
Probab=20.34 E-value=59 Score=22.55 Aligned_cols=22 Identities=23% Similarity=0.702 Sum_probs=11.1
Q ss_pred eecCccccccCCCCcCeeccCCCCc
Q 026787 91 YFCDICKFYDDDIEKGQFHCDDCGI 115 (233)
Q Consensus 91 Y~C~~C~l~d~~~~k~~yHC~~Cgi 115 (233)
-||+.|.-+- .++-|.|..||+
T Consensus 36 t~C~~C~~~l---~~qG~kC~~C~~ 57 (72)
T 2fnf_X 36 GWCDLCGREV---LRQALRCANCKF 57 (72)
T ss_dssp CBCTTTSSBC---SSCCEECTTSSC
T ss_pred cchhhhhHHH---HhCcCccCCCCC
Confidence 3455553322 355566666654
No 232
>1njq_A Superman protein; zinc-finger, peptide-zinc complex, beta-BETA-ALFA motif, metal binding protein; NMR {Synthetic} SCOP: g.37.1.3 PDB: 2l1o_A
Probab=20.21 E-value=40 Score=18.81 Aligned_cols=18 Identities=17% Similarity=0.562 Sum_probs=13.6
Q ss_pred CCCcCCCCCccccchhHH
Q 026787 188 DKYCCPICSKSVIDMSRT 205 (233)
Q Consensus 188 ~~~~CPiCrksi~dm~~~ 205 (233)
..+.|++|.+++...+.+
T Consensus 5 k~~~C~~C~k~f~~~~~L 22 (39)
T 1njq_A 5 RSYTCSFCKREFRSAQAL 22 (39)
T ss_dssp SSEECTTTCCEESSHHHH
T ss_pred CceECCCCCcccCCHHHH
Confidence 358999999998865443
Done!