BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 026789
(233 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1X9R|A Chain A, Umecyanin From Horse Raddish- Crystal Structure Of The
Oxidised Form
pdb|1X9R|B Chain B, Umecyanin From Horse Raddish- Crystal Structure Of The
Oxidised Form
pdb|1X9U|A Chain A, Umecyanin From Horse Raddish- Crystal Structure Of The
Reduced Form
pdb|1X9U|B Chain B, Umecyanin From Horse Raddish- Crystal Structure Of The
Reduced Form
Length = 116
Score = 98.2 bits (243), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 45/98 (45%), Positives = 59/98 (60%), Gaps = 1/98 (1%)
Query: 27 VGDALGWIVPPNGPATYSNWAANQTFTVGDTLVFNFAAGNHDVTRVTQSSFNACNTTSPL 86
VG + W P + P Y WA +TF VGD L F+FAAG HDV VT+ +F+ C +P+
Sbjct: 6 VGGDMEWKRPSD-PKFYITWATGKTFRVGDELEFDFAAGMHDVAVVTKDAFDNCKKENPI 64
Query: 87 SRTTNSPASVTLTASGPHYFICSFPGHCLGGQKLAINV 124
S T P + L +GP Y+IC+ HC GQKL+INV
Sbjct: 65 SHMTTPPVKIMLNTTGPQYYICTVGDHCRVGQKLSINV 102
>pdb|1JER|A Chain A, Cucumber Stellacyanin, Cu2+, Ph 7.0
Length = 138
Score = 92.0 bits (227), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 52/106 (49%), Positives = 66/106 (62%), Gaps = 7/106 (6%)
Query: 23 TRHVVGDALGWIVPPNGPATYSNWAANQTFTVGDTLVFNFAAGNHDVTRV-TQSSFNAC- 80
T H+VGD GW VP + P YS WAA +TF VGD+L FNF A H+V + T+ SF+AC
Sbjct: 4 TVHIVGDNTGWSVP-SSPNFYSQWAAGKTFRVGDSLQFNFPANAHNVHEMETKQSFDACN 62
Query: 81 --NTTSPLSRTTNSPASVTLTASGPHYFICSFPGHCLGGQKLAINV 124
N+ + + RT SP L G HYF+C+ HC GQKL+INV
Sbjct: 63 FVNSDNDVERT--SPVIERLDELGMHYFVCTVGTHCSNGQKLSINV 106
Score = 31.6 bits (70), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 15/34 (44%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Query: 198 HVVGGALGWTVPPNASVGYQNWARNNNFSVGDIL 231
H+VG GW+VP + + Y WA F VGD L
Sbjct: 6 HIVGDNTGWSVPSSPNF-YSQWAAGKTFRVGDSL 38
>pdb|1WS7|A Chain A, Crystal Structure Of Mavicyanin From Cucurbita Pepo
Medullosa (Zucchini)
pdb|1WS7|B Chain B, Crystal Structure Of Mavicyanin From Cucurbita Pepo
Medullosa (Zucchini)
pdb|1WS7|C Chain C, Crystal Structure Of Mavicyanin From Cucurbita Pepo
Medullosa (Zucchini)
pdb|1WS7|D Chain D, Crystal Structure Of Mavicyanin From Cucurbita Pepo
Medullosa (Zucchini)
pdb|1WS8|A Chain A, Crystal Structure Of Mavicyanin From Cucurbita Pepo
Medullosa (zucchini)
pdb|1WS8|B Chain B, Crystal Structure Of Mavicyanin From Cucurbita Pepo
Medullosa (zucchini)
pdb|1WS8|C Chain C, Crystal Structure Of Mavicyanin From Cucurbita Pepo
Medullosa (zucchini)
pdb|1WS8|D Chain D, Crystal Structure Of Mavicyanin From Cucurbita Pepo
Medullosa (zucchini)
Length = 109
Score = 89.4 bits (220), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 43/102 (42%), Positives = 60/102 (58%), Gaps = 2/102 (1%)
Query: 23 TRHVVGDALGWIVPPNGPATYSNWAANQTFTVGDTLVFNFAAGNHDVTRVTQSSFNACNT 82
T H VGD+ GW P Y+ WA++ F VGD+L+FN+ H+V +V Q F +CN+
Sbjct: 3 TVHKVGDSTGWTTLV--PYDYAKWASSNKFHVGDSLLFNYNNKFHNVLQVDQEQFKSCNS 60
Query: 83 TSPLSRTTNSPASVTLTASGPHYFICSFPGHCLGGQKLAINV 124
+SP + T+ S+ L G YF+C PGHC GQK+ I V
Sbjct: 61 SSPAASYTSGADSIPLKRPGTFYFLCGIPGHCQLGQKVEIKV 102
Score = 30.0 bits (66), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 17/36 (47%), Positives = 20/36 (55%), Gaps = 6/36 (16%)
Query: 198 HVVGGALGWT--VPPNASVGYQNWARNNNFSVGDIL 231
H VG + GWT VP + Y WA +N F VGD L
Sbjct: 5 HKVGDSTGWTTLVPYD----YAKWASSNKFHVGDSL 36
>pdb|2CBP|A Chain A, Cucumber Basic Protein, A Blue Copper Protein
Length = 96
Score = 67.4 bits (163), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 36/99 (36%), Positives = 50/99 (50%), Gaps = 7/99 (7%)
Query: 25 HVVGDALGWIVPPNGPATYSNWAANQTFTVGDTLVFNFAAGNHDVTRVTQSSFNACNTTS 84
+VVG + GW +W + F GD L+FN+ H+V V Q F+ CNT +
Sbjct: 3 YVVGGSGGWTF------NTESWPKGKRFRAGDILLFNYNPSMHNVVVVNQGGFSTCNTPA 56
Query: 85 PLSRTTNSPASVTLTASGPHYFICSFPGHCLGGQKLAIN 123
T+ + L G YFIC+FPGHC G K+A+N
Sbjct: 57 GAKVYTSGRDQIKL-PKGQSYFICNFPGHCQSGMKIAVN 94
>pdb|1F56|A Chain A, Spinach Plantacyanin
pdb|1F56|B Chain B, Spinach Plantacyanin
pdb|1F56|C Chain C, Spinach Plantacyanin
Length = 91
Score = 67.0 bits (162), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 32/79 (40%), Positives = 44/79 (55%), Gaps = 1/79 (1%)
Query: 45 NWAANQTFTVGDTLVFNFAAGNHDVTRVTQSSFNACNTTSPLSRTTNSPASVTLTASGPH 104
N A ++F GD LVF + G H+V V + +C+ ++ + LT G +
Sbjct: 12 NGARGKSFRAGDVLVFKYIKGQHNVVAVNGRGYASCSAPRGARTYSSGQDRIKLT-RGQN 70
Query: 105 YFICSFPGHCLGGQKLAIN 123
YFICSFPGHC GG K+AIN
Sbjct: 71 YFICSFPGHCGGGMKIAIN 89
>pdb|1QHQ|A Chain A, Auracyanin, A Blue Copper Protein From The Green
Thermophilic Photosynthetic Bacterium Chloroflexus
Aurantiacus
pdb|1OV8|A Chain A, Auracyanin B Structure In Space Group, P65
pdb|1OV8|B Chain B, Auracyanin B Structure In Space Group, P65
pdb|1OV8|C Chain C, Auracyanin B Structure In Space Group, P65
pdb|1OV8|D Chain D, Auracyanin B Structure In Space Group, P65
Length = 140
Score = 31.6 bits (70), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 12/25 (48%), Positives = 16/25 (64%)
Query: 100 ASGPHYFICSFPGHCLGGQKLAINV 124
A G + +IC+FPGH L G K + V
Sbjct: 114 APGTYLYICTFPGHYLAGMKGTLTV 138
>pdb|2FLQ|A Chain A, Crystal Structure Of Nitric Oxide Synthase From
Geobacillus Stearothermophilus (Atcc 12980) Complexed
With L-Arginine
pdb|2FLQ|B Chain B, Crystal Structure Of Nitric Oxide Synthase From
Geobacillus Stearothermophilus (Atcc 12980) Complexed
With L-Arginine
Length = 375
Score = 28.5 bits (62), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 13/26 (50%), Positives = 15/26 (57%), Gaps = 1/26 (3%)
Query: 17 QSSTAQTRHVVGDALGWIVPPNGPAT 42
Q A RHV GD W++PP PAT
Sbjct: 319 QQEKAAGRHVTGD-WTWLIPPLSPAT 343
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.131 0.421
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,831,893
Number of Sequences: 62578
Number of extensions: 147059
Number of successful extensions: 456
Number of sequences better than 100.0: 20
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 440
Number of HSP's gapped (non-prelim): 23
length of query: 233
length of database: 14,973,337
effective HSP length: 96
effective length of query: 137
effective length of database: 8,965,849
effective search space: 1228321313
effective search space used: 1228321313
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)