Query 026789
Match_columns 233
No_of_seqs 328 out of 1441
Neff 6.3
Searched_HMMs 46136
Date Fri Mar 29 12:43:56 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026789.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026789hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03148 Blue copper-like prot 100.0 6.5E-39 1.4E-43 266.2 13.7 107 15-126 13-119 (167)
2 PF02298 Cu_bind_like: Plastoc 100.0 3.2E-30 6.9E-35 193.0 2.1 85 33-118 1-85 (85)
3 PRK02710 plastocyanin; Provisi 98.9 2.3E-08 4.9E-13 79.0 11.2 72 48-125 47-119 (119)
4 COG3794 PetE Plastocyanin [Ene 98.7 2E-07 4.2E-12 74.9 10.2 73 48-125 54-127 (128)
5 TIGR03102 halo_cynanin halocya 98.5 7.7E-07 1.7E-11 70.3 9.4 89 21-125 22-115 (115)
6 TIGR02656 cyanin_plasto plasto 98.5 9.5E-07 2E-11 67.4 8.8 75 48-125 17-99 (99)
7 PF00127 Copper-bind: Copper b 98.4 5.4E-07 1.2E-11 68.6 6.6 76 48-125 17-99 (99)
8 TIGR02375 pseudoazurin pseudoa 98.3 3.2E-06 6.9E-11 66.8 8.8 75 48-127 15-89 (116)
9 TIGR02657 amicyanin amicyanin. 97.7 0.00018 3.8E-09 53.1 7.5 72 48-125 11-83 (83)
10 TIGR03095 rusti_cyanin rusticy 97.3 0.00062 1.3E-08 55.9 6.6 73 49-124 53-147 (148)
11 COG4454 Uncharacterized copper 96.8 0.013 2.8E-07 48.6 9.8 79 47-125 62-157 (158)
12 PF06525 SoxE: Sulfocyanin (So 96.5 0.013 2.8E-07 50.3 7.7 78 52-129 90-190 (196)
13 PF13473 Cupredoxin_1: Cupredo 96.4 0.0019 4.1E-08 49.3 1.9 65 48-124 35-104 (104)
14 TIGR03096 nitroso_cyanin nitro 96.1 0.015 3.2E-07 47.2 6.0 64 41-115 54-123 (135)
15 KOG1924 RhoA GTPase effector D 96.0 0.019 4.1E-07 58.1 7.1 11 197-207 619-632 (1102)
16 KOG3858 Ephrin, ligand for Eph 95.8 0.035 7.6E-07 48.9 7.1 80 50-129 45-164 (233)
17 TIGR03094 sulfo_cyanin sulfocy 94.1 0.045 9.8E-07 46.6 3.0 31 99-129 159-189 (195)
18 PF00812 Ephrin: Ephrin; Inte 93.3 0.032 6.9E-07 45.8 0.7 35 49-83 23-68 (145)
19 TIGR02695 azurin azurin. Azuri 91.9 0.99 2.1E-05 36.2 7.5 30 93-123 90-124 (125)
20 TIGR02376 Cu_nitrite_red nitri 90.7 0.59 1.3E-05 42.7 5.9 76 49-127 60-147 (311)
21 PRK10378 inactive ferrous ion 90.2 2.1 4.7E-05 40.3 9.3 30 93-127 89-118 (375)
22 PLN02604 oxidoreductase 88.6 2.6 5.6E-05 41.7 9.0 81 46-127 53-145 (566)
23 PLN02354 copper ion binding / 88.1 6.6 0.00014 38.9 11.4 76 49-128 59-148 (552)
24 PF07174 FAP: Fibronectin-atta 88.0 4.5 9.8E-05 36.6 9.2 14 203-216 124-137 (297)
25 PF07732 Cu-oxidase_3: Multico 87.7 0.18 3.8E-06 39.6 0.2 79 48-126 26-115 (117)
26 PRK02888 nitrous-oxide reducta 87.6 1.5 3.2E-05 44.0 6.6 67 48-126 555-634 (635)
27 PLN02168 copper ion binding / 84.1 12 0.00025 37.1 10.8 80 49-128 58-147 (545)
28 PF10731 Anophelin: Thrombin i 84.1 0.76 1.6E-05 32.2 1.9 31 1-31 1-31 (65)
29 PF00116 COX2: Cytochrome C ox 84.0 2.4 5.2E-05 33.4 5.0 66 47-124 45-119 (120)
30 PLN02835 oxidoreductase 83.7 12 0.00025 37.0 10.7 79 49-127 61-149 (539)
31 TIGR02866 CoxB cytochrome c ox 82.2 3.3 7.1E-05 35.3 5.5 85 24-126 93-192 (201)
32 TIGR01480 copper_res_A copper- 81.2 7.3 0.00016 38.9 8.3 79 48-126 76-162 (587)
33 PRK09723 putative fimbrial-lik 81.1 17 0.00037 34.9 10.2 11 22-32 27-37 (421)
34 PF08139 LPAM_1: Prokaryotic m 81.1 1.3 2.9E-05 25.7 1.8 18 1-18 6-23 (25)
35 TIGR03388 ascorbase L-ascorbat 80.5 3.3 7.2E-05 40.7 5.6 81 48-128 32-123 (541)
36 PLN00044 multi-copper oxidase- 79.4 4.7 0.0001 40.3 6.3 76 49-128 61-150 (596)
37 KOG1263 Multicopper oxidases [ 79.1 21 0.00045 35.6 10.6 79 48-131 59-152 (563)
38 COG1622 CyoA Heme/copper-type 76.4 6.8 0.00015 34.9 5.8 68 49-128 138-214 (247)
39 MTH00047 COX2 cytochrome c oxi 74.4 30 0.00065 29.6 9.1 32 95-128 159-193 (194)
40 PLN02792 oxidoreductase 72.8 11 0.00025 37.1 6.9 75 49-127 48-136 (536)
41 TIGR01480 copper_res_A copper- 71.2 9.9 0.00021 38.0 6.1 87 32-124 487-586 (587)
42 PRK13838 conjugal transfer pil 71.0 2 4.4E-05 36.2 1.1 15 49-63 48-62 (176)
43 PF07172 GRP: Glycine rich pro 69.2 3.5 7.5E-05 31.5 1.9 9 1-9 1-9 (95)
44 PF02839 CBM_5_12: Carbohydrat 68.8 3 6.4E-05 26.2 1.3 19 43-61 1-19 (41)
45 TIGR02228 sigpep_I_arch signal 68.3 15 0.00032 30.4 5.7 25 49-73 58-86 (158)
46 PF12961 DUF3850: Domain of Un 65.9 4.5 9.7E-05 29.4 1.9 18 48-65 25-43 (72)
47 PRK13791 lysozyme inhibitor; P 65.9 46 0.00099 26.2 7.7 23 57-79 55-80 (113)
48 PLN02191 L-ascorbate oxidase 64.0 15 0.00032 36.6 5.7 78 49-126 55-143 (574)
49 cd06555 ASCH_PF0470_like ASC-1 63.7 7 0.00015 30.6 2.7 30 50-79 30-61 (109)
50 TIGR03389 laccase laccase, pla 63.5 21 0.00046 35.0 6.7 79 49-128 35-124 (539)
51 PLN03148 Blue copper-like prot 62.7 4.4 9.5E-05 34.1 1.5 18 192-209 17-34 (167)
52 PF02402 Lysis_col: Lysis prot 61.0 3.5 7.7E-05 27.1 0.5 22 1-22 1-22 (46)
53 PF07174 FAP: Fibronectin-atta 60.9 69 0.0015 29.2 8.8 16 217-232 125-142 (297)
54 PRK11372 lysozyme inhibitor; P 59.2 64 0.0014 25.1 7.4 24 55-78 50-76 (109)
55 PLN02991 oxidoreductase 56.5 38 0.00082 33.5 7.0 80 49-128 60-149 (543)
56 PRK13861 type IV secretion sys 55.5 27 0.00058 31.8 5.4 23 50-72 37-59 (292)
57 PRK11627 hypothetical protein; 53.6 15 0.00032 31.5 3.3 21 1-21 1-21 (192)
58 PRK12407 flgH flagellar basal 53.2 22 0.00047 31.2 4.3 18 46-63 59-76 (221)
59 PRK12696 flgH flagellar basal 46.2 31 0.00067 30.5 4.2 17 47-63 61-77 (236)
60 TIGR02227 sigpep_I_bact signal 43.7 65 0.0014 26.3 5.5 14 50-63 50-63 (163)
61 PF05382 Amidase_5: Bacterioph 43.3 57 0.0012 26.8 5.0 34 50-83 74-112 (145)
62 PF15240 Pro-rich: Proline-ric 42.9 12 0.00027 31.7 1.1 16 7-22 2-17 (179)
63 TIGR01626 ytfJ_HI0045 conserve 41.9 25 0.00055 29.8 2.9 24 39-64 45-68 (184)
64 PF12195 End_beta_barrel: Beta 41.8 14 0.00031 27.2 1.1 49 49-106 25-79 (83)
65 PF10913 DUF2706: Protein of u 41.6 27 0.00058 23.9 2.4 19 1-19 1-21 (60)
66 PF09451 ATG27: Autophagy-rela 40.4 25 0.00055 31.3 2.8 24 21-48 222-245 (268)
67 PRK12701 flgH flagellar basal 39.8 49 0.0011 29.2 4.4 18 46-63 63-80 (230)
68 PF03823 Neurokinin_B: Neuroki 39.5 28 0.00061 24.1 2.2 16 1-16 1-16 (59)
69 PRK12750 cpxP periplasmic repr 39.1 23 0.00049 29.7 2.1 19 1-19 3-21 (170)
70 PRK09810 entericidin A; Provis 38.4 34 0.00073 22.2 2.4 10 1-10 1-10 (41)
71 PRK11528 hypothetical protein; 38.2 36 0.00078 30.4 3.4 37 31-71 26-70 (254)
72 TIGR01433 CyoA cytochrome o ub 37.7 1.8E+02 0.0039 25.3 7.7 31 94-126 181-214 (226)
73 PF02362 B3: B3 DNA binding do 37.2 24 0.00053 25.7 1.8 20 48-67 70-89 (100)
74 PLN00115 pollen allergen group 36.6 49 0.0011 26.2 3.6 30 1-30 1-33 (118)
75 PF10829 DUF2554: Protein of u 36.0 34 0.00073 24.9 2.3 20 1-20 1-20 (76)
76 TIGR03431 PhnD phosphonate ABC 35.9 37 0.0008 29.7 3.1 29 1-29 1-33 (288)
77 PRK10808 outer membrane protei 35.9 31 0.00068 31.6 2.7 36 1-36 1-39 (351)
78 PF04625 DEC-1_N: DEC-1 protei 35.7 70 0.0015 29.9 4.8 15 196-210 159-173 (407)
79 PF10377 ATG11: Autophagy-rela 35.6 26 0.00056 28.0 1.9 19 50-68 41-59 (129)
80 PF06462 Hyd_WA: Propeller; I 35.4 70 0.0015 19.2 3.4 25 95-119 3-27 (32)
81 MTH00140 COX2 cytochrome c oxi 35.4 39 0.00084 29.5 3.1 30 95-126 183-215 (228)
82 PTZ00047 cytochrome c oxidase 35.4 41 0.00088 28.2 3.1 30 95-126 116-148 (162)
83 PLN02983 biotin carboxyl carri 35.3 2.9E+02 0.0062 25.2 8.6 11 222-232 223-233 (274)
84 TIGR01653 lactococcin_972 bact 33.9 58 0.0013 24.7 3.4 11 1-11 1-11 (92)
85 PRK04517 hypothetical protein; 33.4 1.5E+02 0.0032 25.7 6.4 13 18-30 18-30 (216)
86 PF07731 Cu-oxidase_2: Multico 33.3 37 0.00079 26.3 2.4 32 95-126 105-136 (138)
87 KOG2315 Predicted translation 33.3 68 0.0015 31.9 4.6 64 45-108 208-277 (566)
88 PRK10883 FtsI repressor; Provi 33.2 2.1E+02 0.0045 27.7 8.0 76 48-128 77-167 (471)
89 PF12988 DUF3872: Domain of un 33.0 54 0.0012 26.7 3.3 74 43-126 35-121 (137)
90 TIGR02738 TrbB type-F conjugat 32.3 58 0.0013 26.6 3.5 18 1-18 1-18 (153)
91 cd05810 CBM20_alpha_MTH Glucan 31.5 48 0.001 24.8 2.7 42 22-63 16-63 (97)
92 PRK15313 autotransport protein 31.1 2.1E+02 0.0045 30.5 7.9 14 96-109 543-556 (955)
93 PRK10861 signal peptidase I; P 30.9 97 0.0021 28.7 5.1 15 50-64 124-138 (324)
94 smart00495 ChtBD3 Chitin-bindi 30.9 32 0.0007 21.4 1.4 18 43-60 1-18 (41)
95 TIGR03511 GldH_lipo gliding mo 30.2 2.4E+02 0.0051 23.3 6.8 26 56-81 42-73 (156)
96 MTH00154 COX2 cytochrome c oxi 30.1 55 0.0012 28.6 3.2 30 95-126 183-215 (227)
97 PRK13792 lysozyme inhibitor; P 29.9 37 0.0008 27.3 1.9 19 1-19 1-19 (127)
98 PF06291 Lambda_Bor: Bor prote 29.9 64 0.0014 24.7 3.1 19 11-30 9-27 (97)
99 cd05820 CBM20_novamyl Novamyl 29.8 51 0.0011 24.8 2.6 43 22-64 19-70 (103)
100 PRK10081 entericidin B membran 29.4 32 0.0007 23.1 1.2 8 1-8 1-8 (48)
101 PRK12698 flgH flagellar basal 29.2 81 0.0018 27.7 4.1 18 46-63 58-75 (224)
102 PRK09973 putative outer membra 29.1 51 0.0011 24.7 2.4 21 1-21 1-22 (85)
103 MTH00168 COX2 cytochrome c oxi 28.7 57 0.0012 28.4 3.0 30 95-126 183-215 (225)
104 MTH00117 COX2 cytochrome c oxi 28.2 68 0.0015 28.0 3.4 30 95-126 183-215 (227)
105 PRK09752 adhesin; Provisional 27.8 72 0.0016 34.6 4.0 6 56-61 839-844 (1250)
106 PRK13884 conjugal transfer pep 27.6 42 0.00092 28.2 1.9 18 46-63 45-62 (178)
107 TIGR01432 QOXA cytochrome aa3 27.2 3.4E+02 0.0073 23.3 7.6 31 94-126 172-205 (217)
108 PRK10525 cytochrome o ubiquino 27.2 2.9E+02 0.0063 25.5 7.5 85 23-125 128-225 (315)
109 PF11008 DUF2846: Protein of u 27.1 2.4E+02 0.0053 21.5 6.1 29 48-76 41-69 (117)
110 COG3627 PhnJ Uncharacterized e 26.7 36 0.00079 29.9 1.4 24 94-117 257-280 (291)
111 TIGR00752 slp outer membrane l 26.7 90 0.002 26.6 3.8 31 42-72 35-71 (182)
112 MTH00139 COX2 cytochrome c oxi 26.4 63 0.0014 28.1 2.9 30 95-126 183-215 (226)
113 PRK01904 hypothetical protein; 26.4 2.3E+02 0.0051 24.5 6.4 16 49-64 50-67 (219)
114 MTH00129 COX2 cytochrome c oxi 26.2 63 0.0014 28.3 2.9 30 95-126 183-215 (230)
115 MTH00038 COX2 cytochrome c oxi 26.1 69 0.0015 28.0 3.1 30 95-126 183-215 (229)
116 PF06586 TraK: TraK protein; 26.0 4.2E+02 0.0091 22.6 10.2 11 1-11 2-12 (234)
117 MTH00098 COX2 cytochrome c oxi 25.9 67 0.0015 28.1 3.0 30 95-126 183-215 (227)
118 PLN03024 Putative EG45-like do 25.5 39 0.00085 27.0 1.3 20 1-20 1-20 (125)
119 PRK15240 resistance to complem 25.2 54 0.0012 27.7 2.2 16 1-16 1-16 (185)
120 PRK15319 AIDA autotransporter- 24.8 2.3E+02 0.0049 32.6 7.1 82 92-185 1646-1729(2039)
121 PF05984 Cytomega_UL20A: Cytom 24.2 65 0.0014 24.3 2.1 12 1-12 1-12 (100)
122 PF11949 DUF3466: Protein of u 24.1 61 0.0013 32.6 2.6 18 1-18 1-18 (599)
123 COG4939 Major membrane immunog 23.7 1.5E+02 0.0032 24.1 4.3 15 49-63 51-65 (147)
124 PRK00807 50S ribosomal protein 23.5 31 0.00067 23.3 0.3 41 79-123 3-43 (52)
125 MTH00023 COX2 cytochrome c oxi 23.3 78 0.0017 27.9 2.9 30 95-126 194-226 (240)
126 PF11604 CusF_Ec: Copper bindi 23.2 53 0.0011 23.2 1.5 20 46-65 37-56 (70)
127 PRK10002 outer membrane protei 23.1 78 0.0017 29.2 3.0 20 1-20 1-20 (362)
128 COG5569 Uncharacterized conser 22.9 72 0.0016 24.7 2.2 25 48-72 80-106 (108)
129 KOG1568 Mitochondrial inner me 22.8 42 0.0009 28.4 1.0 45 25-69 35-86 (174)
130 PF11766 Candida_ALS_N: Cell-w 22.7 33 0.00071 30.7 0.4 36 49-84 6-48 (249)
131 PF04945 YHS: YHS domain; Int 22.6 35 0.00076 22.0 0.4 23 91-115 11-33 (47)
132 COG0681 LepB Signal peptidase 22.5 1.1E+02 0.0023 24.2 3.4 8 55-62 88-95 (166)
133 PRK13733 conjugal transfer pro 22.0 68 0.0015 27.1 2.1 21 1-21 1-21 (171)
134 PF14755 ER-remodelling: Intra 21.8 1.7E+02 0.0038 23.7 4.3 7 226-232 129-135 (148)
135 PRK09752 adhesin; Provisional 21.8 1E+02 0.0022 33.6 3.8 7 54-60 809-815 (1250)
136 PRK15137 DNA-specific endonucl 21.7 64 0.0014 28.7 2.0 18 1-18 1-18 (235)
137 PF04014 Antitoxin-MazE: Antid 21.6 48 0.001 21.3 0.9 33 26-65 2-34 (47)
138 MTH00008 COX2 cytochrome c oxi 21.5 90 0.002 27.3 2.9 30 95-126 183-215 (228)
139 TIGR03390 ascorbOXfungal L-asc 20.8 2.9E+02 0.0063 27.2 6.6 81 50-131 41-134 (538)
140 PRK15396 murein lipoprotein; P 20.8 93 0.002 22.9 2.4 21 1-21 1-23 (78)
141 PRK10965 multicopper oxidase; 20.4 2.9E+02 0.0063 27.2 6.5 78 48-128 77-167 (523)
142 COG1188 Ribosome-associated he 20.1 1.1E+02 0.0024 23.7 2.7 22 48-69 45-66 (100)
143 PRK14891 50S ribosomal protein 20.0 34 0.00075 27.6 -0.0 41 79-123 6-46 (131)
No 1
>PLN03148 Blue copper-like protein; Provisional
Probab=100.00 E-value=6.5e-39 Score=266.18 Aligned_cols=107 Identities=34% Similarity=0.632 Sum_probs=98.3
Q ss_pred HhhhcccceEEEecCCCCCccCCCCCCCccccccCeeeeeCCEEEEEecCCCceEEEEcCCCCCcCCCCCCCCcCCCCCc
Q 026789 15 LVQSSTAQTRHVVGDALGWIVPPNGPATYSNWAANQTFTVGDTLVFNFAAGNHDVTRVTQSSFNACNTTSPLSRTTNSPA 94 (233)
Q Consensus 15 l~~~~~a~~~~~VGg~~GW~~~~~~~~~Y~~Wa~~~~f~vGD~L~F~y~~~~H~V~~V~~~~y~~C~~~~~~~~~~~G~~ 94 (233)
++..++++++|+|||+.||+. ..+|++|+++++|+|||+|+|+|+.+.|+|+||++++|++|+.++++..+++|++
T Consensus 13 ~~~~~~~a~~~~VGd~~GW~~----~~~Y~~WA~~k~F~VGD~LvF~Y~~~~hnV~~V~~~~Y~~C~~~~pi~~~tsG~d 88 (167)
T PLN03148 13 FSASATTATDHIVGANKGWNP----GINYTLWANNQTFYVGDLISFRYQKTQYNVFEVNQTGYDNCTTEGAAGNWTSGKD 88 (167)
T ss_pred HhhhhccceEEEeCCCCCcCC----CCChhHhhcCCCCccCCEEEEEecCCCceEEEEChHHcCcccCCCCcceecCCCc
Confidence 333455677999999999985 4589999999999999999999999999999999999999999999999999999
Q ss_pred eEEeccCCCeeEecCCCCCCCCCCeeeEEecC
Q 026789 95 SVTLTASGPHYFICSFPGHCLGGQKLAINVSA 126 (233)
Q Consensus 95 ~v~l~~~G~~yFic~~~~hC~~Gmk~~I~V~~ 126 (233)
.|+|++.|.|||||+ .+||++||||.|+|..
T Consensus 89 ~v~L~~~G~~YFIcg-~ghC~~GmKl~I~V~~ 119 (167)
T PLN03148 89 FIPLNKAKRYYFICG-NGQCFNGMKVTILVHP 119 (167)
T ss_pred EEEecCCccEEEEcC-CCccccCCEEEEEEcC
Confidence 999999999999999 5899999999999953
No 2
>PF02298 Cu_bind_like: Plastocyanin-like domain; InterPro: IPR003245 Blue (type 1) copper proteins are small proteins which bind a single copper atom and which are characterised by an intense electronic absorption band near 600 nm [, ]. The most well known members of this class of proteins are the plant chloroplastic plastocyanins, which exchange electrons with cytochrome c6, and the distantly related bacterial azurins, which exchange electrons with cytochrome c551. This family of proteins also includes amicyanin from bacteria such as Methylobacterium extorquens or Paracoccus versutus (Thiobacillus versutus) that can grow on methylamine; auracyanins A and B from Chloroflexus aurantiacus []; blue copper protein from Alcaligenes faecalis; cupredoxin (CPC) from Cucumis sativus (Cucumber) peelings []; cusacyanin (basic blue protein; plantacyanin, CBP) from cucumber; halocyanin from Natronomonas pharaonis (Natronobacterium pharaonis) [], a membrane associated copper-binding protein; pseudoazurin from Pseudomonas; rusticyanin from Thiobacillus ferrooxidans []; stellacyanin from Rhus vernicifera (Japanese lacquer tree); umecyanin from the roots of Armoracia rusticana (Horseradish); and allergen Ra3 from ragweed. Although there is an appreciable amount of divergence in the sequences of all these proteins, the copper ligand sites are conserved. This domain is found in a variety of plant cyanins and pollern allergen. Some of the proteins in this family are allergens. Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Amb a 3.; GO: 0005507 copper ion binding, 0009055 electron carrier activity; PDB: 1JER_A 1WS7_A 1WS8_D 1F56_B 1X9R_B 1X9U_A 2CBP_A.
Probab=99.96 E-value=3.2e-30 Score=193.05 Aligned_cols=85 Identities=48% Similarity=1.096 Sum_probs=70.1
Q ss_pred CccCCCCCCCccccccCeeeeeCCEEEEEecCCCceEEEEcCCCCCcCCCCCCCCcCCCCCceEEeccCCCeeEecCCCC
Q 026789 33 WIVPPNGPATYSNWAANQTFTVGDTLVFNFAAGNHDVTRVTQSSFNACNTTSPLSRTTNSPASVTLTASGPHYFICSFPG 112 (233)
Q Consensus 33 W~~~~~~~~~Y~~Wa~~~~f~vGD~L~F~y~~~~H~V~~V~~~~y~~C~~~~~~~~~~~G~~~v~l~~~G~~yFic~~~~ 112 (233)
|+++.+ ..+|++||++++|+|||+|+|+|..+.|+|+||++++|++|+.++++..+.+|++.|+|+++|.+||||++++
T Consensus 1 W~~~~~-~~~Y~~Wa~~~~F~vGD~LvF~y~~~~h~V~~V~~~~y~~C~~~~~~~~~~~G~~~v~L~~~G~~YFic~~~~ 79 (85)
T PF02298_consen 1 WTIPTN-ASNYTDWASGKTFRVGDTLVFNYDSGQHSVVEVSKADYDSCNSSNPISTYSTGNDTVTLTKPGPHYFICGVPG 79 (85)
T ss_dssp SSSSSS-TTHHHHHHCTS-BETTEEEEEE--TTTB-EEEESHHHHHHT--STTSEEE-SSEEEEEE-SSEEEEEE--STT
T ss_pred CccCCC-ccchhHhhcCCcEeCCCEEEEEecCCCCeEEecChhhCccCCCCCceecccCCCEEEEeCCCcCeEEEeCCCC
Confidence 777653 3799999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCC
Q 026789 113 HCLGGQ 118 (233)
Q Consensus 113 hC~~Gm 118 (233)
||++||
T Consensus 80 HC~~Gq 85 (85)
T PF02298_consen 80 HCQKGQ 85 (85)
T ss_dssp TTTTT-
T ss_pred cccccC
Confidence 999998
No 3
>PRK02710 plastocyanin; Provisional
Probab=98.90 E-value=2.3e-08 Score=79.02 Aligned_cols=72 Identities=18% Similarity=0.195 Sum_probs=50.9
Q ss_pred cCeeeeeCCEEEEEec-CCCceEEEEcCCCCCcCCCCCCCCcCCCCCceEEeccCCCeeEecCCCCCCCCCCeeeEEec
Q 026789 48 ANQTFTVGDTLVFNFA-AGNHDVTRVTQSSFNACNTTSPLSRTTNSPASVTLTASGPHYFICSFPGHCLGGQKLAINVS 125 (233)
Q Consensus 48 ~~~~f~vGD~L~F~y~-~~~H~V~~V~~~~y~~C~~~~~~~~~~~G~~~v~l~~~G~~yFic~~~~hC~~Gmk~~I~V~ 125 (233)
+..++++||+|.|... ...|+++.-. .+....+ .+....+....++++.+|.|.|+|. .|=+.||+..|.|.
T Consensus 47 ~~i~v~~Gd~V~~~N~~~~~H~v~~~~---~~~~~~~-~~~~~pg~t~~~tF~~~G~y~y~C~--~H~~~gM~G~I~V~ 119 (119)
T PRK02710 47 STLTIKAGDTVKWVNNKLAPHNAVFDG---AKELSHK-DLAFAPGESWEETFSEAGTYTYYCE--PHRGAGMVGKITVE 119 (119)
T ss_pred CEEEEcCCCEEEEEECCCCCceEEecC---Ccccccc-ccccCCCCEEEEEecCCEEEEEEcC--CCccCCcEEEEEEC
Confidence 6789999999999764 4569997521 1111111 1111223357899999999999999 89999999999983
No 4
>COG3794 PetE Plastocyanin [Energy production and conversion]
Probab=98.68 E-value=2e-07 Score=74.90 Aligned_cols=73 Identities=26% Similarity=0.286 Sum_probs=54.7
Q ss_pred cCeeeeeCCEEEEEecCC-CceEEEEcCCCCCcCCCCCCCCcCCCCCceEEeccCCCeeEecCCCCCCCCCCeeeEEec
Q 026789 48 ANQTFTVGDTLVFNFAAG-NHDVTRVTQSSFNACNTTSPLSRTTNSPASVTLTASGPHYFICSFPGHCLGGQKLAINVS 125 (233)
Q Consensus 48 ~~~~f~vGD~L~F~y~~~-~H~V~~V~~~~y~~C~~~~~~~~~~~G~~~v~l~~~G~~yFic~~~~hC~~Gmk~~I~V~ 125 (233)
+..++++||+|.|.+... .|||+-+...+.+. ...+..-.+-.++++++++|.|.|+|. -|-..|||..|.|.
T Consensus 54 A~v~v~pGDTVtw~~~d~~~Hnv~~~~~~~~~g---~~~~~~~~~~s~~~Tfe~~G~Y~Y~C~--PH~~~gM~G~IvV~ 127 (128)
T COG3794 54 AEVTVKPGDTVTWVNTDSVGHNVTAVGGMDPEG---SGTLKAGINESFTHTFETPGEYTYYCT--PHPGMGMKGKIVVG 127 (128)
T ss_pred cEEEECCCCEEEEEECCCCCceEEEeCCCCccc---ccccccCCCcceEEEecccceEEEEec--cCCCCCcEEEEEeC
Confidence 679999999999999876 89999874431111 111111112357899999999999999 78899999999985
No 5
>TIGR03102 halo_cynanin halocyanin domain. Halocyanins are blue (type I) copper redox proteins found in halophilic archaea such as Natronobacterium pharaonis. This model represents a domain duplicated in some halocyanins, while appearing once in others. This domain includes the characteristic copper ligand residues. This family does not include plastocyanins, and does not include certain divergent paralogs of halocyanin.
Probab=98.52 E-value=7.7e-07 Score=70.26 Aligned_cols=89 Identities=21% Similarity=0.325 Sum_probs=62.3
Q ss_pred cceEEEec--CCC-CCccCCCCCCCccccccCeeeeeCCEEEEEecC--CCceEEEEcCCCCCcCCCCCCCCcCCCCCce
Q 026789 21 AQTRHVVG--DAL-GWIVPPNGPATYSNWAANQTFTVGDTLVFNFAA--GNHDVTRVTQSSFNACNTTSPLSRTTNSPAS 95 (233)
Q Consensus 21 a~~~~~VG--g~~-GW~~~~~~~~~Y~~Wa~~~~f~vGD~L~F~y~~--~~H~V~~V~~~~y~~C~~~~~~~~~~~G~~~ 95 (233)
...++.|| ++. +..+.| +..++++||+|.|.++. ..|+|+......|+. ............
T Consensus 22 ~~~~v~~G~~~~~g~~~F~P----------~~ltV~~GdTVtw~~~~d~~~HnV~s~~~~~f~s----~~~~~~~G~t~s 87 (115)
T TIGR03102 22 DEVTVDVGAEANGGGFAFDP----------PAIRVDPGTTVVWEWTGEGGGHNVVSDGDGDLDE----SERVSEEGTTYE 87 (115)
T ss_pred ceEEEEecccCCCCceeEeC----------CEEEECCCCEEEEEECCCCCCEEEEECCCCCccc----cccccCCCCEEE
Confidence 44567788 332 355543 56899999999999864 579998643334442 111112234689
Q ss_pred EEeccCCCeeEecCCCCCCCCCCeeeEEec
Q 026789 96 VTLTASGPHYFICSFPGHCLGGQKLAINVS 125 (233)
Q Consensus 96 v~l~~~G~~yFic~~~~hC~~Gmk~~I~V~ 125 (233)
++|+++|.|-|+|. -|=..|||..|.|.
T Consensus 88 ~Tf~~~G~Y~Y~C~--pH~~~gM~G~I~V~ 115 (115)
T TIGR03102 88 HTFEEPGIYLYVCV--PHEALGMKGAVVVE 115 (115)
T ss_pred EEecCCcEEEEEcc--CCCCCCCEEEEEEC
Confidence 99999999999999 67778999999983
No 6
>TIGR02656 cyanin_plasto plastocyanin. Members of this family are plastocyanin, a blue copper protein related to pseudoazurin, halocyanin, amicyanin, etc. This protein, located in the thylakoid luman, performs electron transport to photosystem I in Cyanobacteria and chloroplasts.
Probab=98.48 E-value=9.5e-07 Score=67.43 Aligned_cols=75 Identities=24% Similarity=0.302 Sum_probs=51.8
Q ss_pred cCeeeeeCCEEEEEecC-CCceEEEEcCCCCC------cCCCC-CCCCcCCCCCceEEeccCCCeeEecCCCCCCCCCCe
Q 026789 48 ANQTFTVGDTLVFNFAA-GNHDVTRVTQSSFN------ACNTT-SPLSRTTNSPASVTLTASGPHYFICSFPGHCLGGQK 119 (233)
Q Consensus 48 ~~~~f~vGD~L~F~y~~-~~H~V~~V~~~~y~------~C~~~-~~~~~~~~G~~~v~l~~~G~~yFic~~~~hC~~Gmk 119 (233)
+..++++||+|.|.... ..|+|+..+.. .. ..... +.+.........++++.+|.|.|+|. .||+.||+
T Consensus 17 ~~i~v~~G~~V~~~N~~~~~H~~~~~~~~-~~~~~~~~~~~~~~~~~~~~pG~t~~~tF~~~G~y~y~C~--~H~~aGM~ 93 (99)
T TIGR02656 17 AKISIAAGDTVEWVNNKGGPHNVVFDEDA-VPAGVKELAKSLSHKDLLNSPGESYEVTFSTPGTYTFYCE--PHRGAGMV 93 (99)
T ss_pred CEEEECCCCEEEEEECCCCCceEEECCCC-CccchhhhcccccccccccCCCCEEEEEeCCCEEEEEEcC--CccccCCE
Confidence 57899999999998653 56999874321 00 01110 01111123346889999999999999 99999999
Q ss_pred eeEEec
Q 026789 120 LAINVS 125 (233)
Q Consensus 120 ~~I~V~ 125 (233)
..|.|.
T Consensus 94 G~I~V~ 99 (99)
T TIGR02656 94 GKITVE 99 (99)
T ss_pred EEEEEC
Confidence 999884
No 7
>PF00127 Copper-bind: Copper binding proteins, plastocyanin/azurin family; InterPro: IPR000923 Blue (type 1) copper proteins are small proteins which bind a single copper atom and which are characterised by an intense electronic absorption band near 600 nm [, ]. The most well known members of this class of proteins are the plant chloroplastic plastocyanins, which exchange electrons with cytochrome c6, and the distantly related bacterial azurins, which exchange electrons with cytochrome c551. This family of proteins also includes amicyanin from bacteria such as Methylobacterium extorquens or Paracoccus versutus (Thiobacillus versutus) that can grow on methylamine; auracyanins A and B from Chloroflexus aurantiacus []; blue copper protein from Alcaligenes faecalis; cupredoxin (CPC) from Cucumis sativus (Cucumber) peelings []; cusacyanin (basic blue protein; plantacyanin, CBP) from cucumber; halocyanin from Natronomonas pharaonis (Natronobacterium pharaonis) [], a membrane associated copper-binding protein; pseudoazurin from Pseudomonas; rusticyanin from Thiobacillus ferrooxidans []; stellacyanin from Rhus vernicifera (Japanese lacquer tree); umecyanin from the roots of Armoracia rusticana (Horseradish); and allergen Ra3 from ragweed. This pollen protein is evolutionary related to the above proteins, but seems to have lost the ability to bind copper. Although there is an appreciable amount of divergence in the sequences of all these proteins, the copper ligand sites are conserved.; GO: 0005507 copper ion binding, 0009055 electron carrier activity; PDB: 1UAT_A 1CUO_A 1PLC_A 4PCY_A 3PCY_A 1PND_A 1PNC_A 1JXG_A 6PCY_A 1TKW_A ....
Probab=98.45 E-value=5.4e-07 Score=68.63 Aligned_cols=76 Identities=26% Similarity=0.317 Sum_probs=54.4
Q ss_pred cCeeeeeCCEEEEEe-cCCCceEEEEcCC--CCCcCCCCCCC---CcCCCC-CceEEeccCCCeeEecCCCCCCCCCCee
Q 026789 48 ANQTFTVGDTLVFNF-AAGNHDVTRVTQS--SFNACNTTSPL---SRTTNS-PASVTLTASGPHYFICSFPGHCLGGQKL 120 (233)
Q Consensus 48 ~~~~f~vGD~L~F~y-~~~~H~V~~V~~~--~y~~C~~~~~~---~~~~~G-~~~v~l~~~G~~yFic~~~~hC~~Gmk~ 120 (233)
+.+++++||+|.|.+ ....|+|+..... .-..+...... .....| ...++++++|.|.|+|. + |...||+.
T Consensus 17 ~~i~V~~G~tV~~~n~~~~~Hnv~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~tF~~~G~y~y~C~-P-H~~~GM~G 94 (99)
T PF00127_consen 17 SEITVKAGDTVTFVNNDSMPHNVVFVADGMPAGADSDYVPPGDSSPLLAPGETYSVTFTKPGTYEYYCT-P-HYEAGMVG 94 (99)
T ss_dssp SEEEEETTEEEEEEEESSSSBEEEEETTSSHTTGGHCHHSTTCEEEEBSTTEEEEEEEESSEEEEEEET-T-TGGTTSEE
T ss_pred CEEEECCCCEEEEEECCCCCceEEEecccccccccccccCccccceecCCCCEEEEEeCCCeEEEEEcC-C-CcccCCEE
Confidence 578999999999998 4668999998522 11112211111 112233 46888999999999999 7 99999999
Q ss_pred eEEec
Q 026789 121 AINVS 125 (233)
Q Consensus 121 ~I~V~ 125 (233)
.|.|.
T Consensus 95 ~i~V~ 99 (99)
T PF00127_consen 95 TIIVE 99 (99)
T ss_dssp EEEEE
T ss_pred EEEEC
Confidence 99884
No 8
>TIGR02375 pseudoazurin pseudoazurin. Pseudoazurin, also called cupredoxin, is a small, blue periplasmic protein with a single bound copper atom. Pseudoazurin is related plastocyanins. Several examples of pseudoazurin are encoded by a neighboring gene for, or have been shown to transfer electrons to, copper-containing nitrite reductases (TIGR02376) of the same species.
Probab=98.34 E-value=3.2e-06 Score=66.84 Aligned_cols=75 Identities=23% Similarity=0.222 Sum_probs=55.8
Q ss_pred cCeeeeeCCEEEEEecCCCceEEEEcCCCCCcCCCCCCCCcCCCCCceEEeccCCCeeEecCCCCCCCCCCeeeEEecCC
Q 026789 48 ANQTFTVGDTLVFNFAAGNHDVTRVTQSSFNACNTTSPLSRTTNSPASVTLTASGPHYFICSFPGHCLGGQKLAINVSAR 127 (233)
Q Consensus 48 ~~~~f~vGD~L~F~y~~~~H~V~~V~~~~y~~C~~~~~~~~~~~G~~~v~l~~~G~~yFic~~~~hC~~Gmk~~I~V~~~ 127 (233)
+..++++||+|.|.+....|+|..+.....+. .+....-.+....++++++|.|-|+|. .|=..||+..|.|...
T Consensus 15 ~~v~V~~GdTV~f~n~d~~Hnv~~~~~~~p~g---~~~~~s~~g~~~~~tF~~~G~Y~Y~C~--pH~~~GM~G~V~Vg~~ 89 (116)
T TIGR02375 15 AYIRAAPGDTVTFVPTDKGHNVETIKGMIPEG---AEAFKSKINEEYTVTVTEEGVYGVKCT--PHYGMGMVALIQVGDP 89 (116)
T ss_pred CEEEECCCCEEEEEECCCCeeEEEccCCCcCC---cccccCCCCCEEEEEeCCCEEEEEEcC--CCccCCCEEEEEECCC
Confidence 67899999999999987789998753211111 111111123457899999999999999 8999999999999874
No 9
>TIGR02657 amicyanin amicyanin. Members of this family are amicyanin, a type I blue copper protein that accepts electrons from the tryptophan tryptophylquinone (TTQ) cofactor of the methylamine dehydrogenase light chain and then transfers them to the heme group of cytochrome c-551i. Amicyanin, methylamine dehydrogenase, and cytochrome c-551i are periplasmic and form a complex. This system has been studied primarily in Paracoccus denitrificans and Methylobacterium extorquens. Related type I blue copper proteins include plastocyanin, pseudoazurin, halocyanin, etc.
Probab=97.72 E-value=0.00018 Score=53.08 Aligned_cols=72 Identities=19% Similarity=0.194 Sum_probs=49.2
Q ss_pred cCeeeeeCCEEEEEecCC-CceEEEEcCCCCCcCCCCCCCCcCCCCCceEEeccCCCeeEecCCCCCCCCCCeeeEEec
Q 026789 48 ANQTFTVGDTLVFNFAAG-NHDVTRVTQSSFNACNTTSPLSRTTNSPASVTLTASGPHYFICSFPGHCLGGQKLAINVS 125 (233)
Q Consensus 48 ~~~~f~vGD~L~F~y~~~-~H~V~~V~~~~y~~C~~~~~~~~~~~G~~~v~l~~~G~~yFic~~~~hC~~Gmk~~I~V~ 125 (233)
+..++.+||+|.|..... .|+|...+....+ =+.... .........++++++|.|-|+|..+. +||..|.|.
T Consensus 11 ~~i~v~~GdtVt~~N~d~~~Hnv~~~~g~~~~-~~~~~~-~~~~g~~~~~tf~~~G~y~y~C~~Hp----~M~G~v~V~ 83 (83)
T TIGR02657 11 PELHVKVGDTVTWINREAMPHNVHFVAGVLGE-AALKGP-MMKKEQAYSLTFTEAGTYDYHCTPHP----FMRGKVVVE 83 (83)
T ss_pred CEEEECCCCEEEEEECCCCCccEEecCCCCcc-cccccc-ccCCCCEEEEECCCCEEEEEEcCCCC----CCeEEEEEC
Confidence 468899999999988754 6999875432111 001111 11123357899999999999999864 599999873
No 10
>TIGR03095 rusti_cyanin rusticyanin. Rusticyanin is a blue copper protein, described in an obligate acidophilic chemolithoautroph, Acidithiobacillus ferrooxidans, as an electron transfer protein. It can constitute up to 5 percent of protein in cells grown on Fe(II) and is thought to be part of an electron chain for Fe(II) oxidation, with two c-type cytochromes, an aa3-type cytochrome oxidase, and 02 as terminal electron acceptor. It is rather closely related to sulfocyanin (TIGR03094).
Probab=97.34 E-value=0.00062 Score=55.93 Aligned_cols=73 Identities=18% Similarity=0.397 Sum_probs=49.1
Q ss_pred CeeeeeCCEEEEEecCC----CceEEEEcCC-CCC------------cCCCCCCCCcCCCC-----CceEEeccCCCeeE
Q 026789 49 NQTFTVGDTLVFNFAAG----NHDVTRVTQS-SFN------------ACNTTSPLSRTTNS-----PASVTLTASGPHYF 106 (233)
Q Consensus 49 ~~~f~vGD~L~F~y~~~----~H~V~~V~~~-~y~------------~C~~~~~~~~~~~G-----~~~v~l~~~G~~yF 106 (233)
.++++.||.|.|.+.+. .|........ .+. .|....+ ..+| ..+++++++|.|||
T Consensus 53 ~I~v~~Gd~V~v~v~N~~~~~~H~~~I~~~g~~~~~~p~mdG~~~~~~~~i~p~---~~~g~~~~~~~tf~f~~aGtywy 129 (148)
T TIGR03095 53 TIVIPEGVTVHFTVINTDTDSGHNFDISKRGPPYPYMPGMDGLGFVAGTGFLPP---PKSGKFGYTDFTYHFSTAGTYWY 129 (148)
T ss_pred EEEEcCCCEEEEEEEeCCCCccccEEeecCCCccccccccCCCCccccCcccCC---CCCCccceeEEEEECCCCeEEEE
Confidence 45679999999988764 4766654321 111 1211110 1122 34677789999999
Q ss_pred ecCCCCCCCCCCeeeEEe
Q 026789 107 ICSFPGHCLGGQKLAINV 124 (233)
Q Consensus 107 ic~~~~hC~~Gmk~~I~V 124 (233)
+|.+.+|-+.||...|.|
T Consensus 130 hC~~pgH~~~GM~G~iiV 147 (148)
T TIGR03095 130 LCTYPGHAENGMYGKIVV 147 (148)
T ss_pred EcCChhHHHCCCEEEEEE
Confidence 999999999999998887
No 11
>COG4454 Uncharacterized copper-binding protein [Inorganic ion transport and metabolism]
Probab=96.84 E-value=0.013 Score=48.56 Aligned_cols=79 Identities=22% Similarity=0.344 Sum_probs=50.2
Q ss_pred ccCeeeeeCCEEEEEecCC---CceEEEE----cCCCCCcC--------CCCCCCCc--CCCCCceEEeccCCCeeEecC
Q 026789 47 AANQTFTVGDTLVFNFAAG---NHDVTRV----TQSSFNAC--------NTTSPLSR--TTNSPASVTLTASGPHYFICS 109 (233)
Q Consensus 47 a~~~~f~vGD~L~F~y~~~---~H~V~~V----~~~~y~~C--------~~~~~~~~--~~~G~~~v~l~~~G~~yFic~ 109 (233)
.++..++.|.++.|.-.+. .|..+.- ....+..= +..+.+.. -.++..++.++.+|.|=|+|.
T Consensus 62 p~~~~v~aG~tv~~v~~n~~el~hef~~~~~~~~~~~~~~~~~~~Dme~d~~~~v~L~PG~s~elvv~ft~~g~ye~~C~ 141 (158)
T COG4454 62 PSSFEVKAGETVRFVLKNEGELKHEFTMDAPDKNLEHVTHMILADDMEHDDPNTVTLAPGKSGELVVVFTGAGKYEFACN 141 (158)
T ss_pred CCcccccCCcEEeeeecCcccceEEEeccCccccchhHHHhhhCCccccCCcceeEeCCCCcEEEEEEecCCccEEEEec
Confidence 4667889999999965543 3665542 00011110 11111111 123345677788999999999
Q ss_pred CCCCCCCCCeeeEEec
Q 026789 110 FPGHCLGGQKLAINVS 125 (233)
Q Consensus 110 ~~~hC~~Gmk~~I~V~ 125 (233)
+++|-+.||...|+|+
T Consensus 142 iPGHy~AGM~g~itV~ 157 (158)
T COG4454 142 IPGHYEAGMVGEITVS 157 (158)
T ss_pred CCCcccCCcEEEEEeC
Confidence 9999999999999986
No 12
>PF06525 SoxE: Sulfocyanin (SoxE); InterPro: IPR010532 Members of this family are blue-copper redox proteins designated sulfocyanin, from the archaeal genera Sulfolobus, Ferroplasma, and Picrophilus. The most closely related proteins characterised as functionally different are the rusticyanins.
Probab=96.47 E-value=0.013 Score=50.31 Aligned_cols=78 Identities=18% Similarity=0.284 Sum_probs=50.3
Q ss_pred eeeCCEEEEEecCC---CceEEEE-cCCCCCcCCCC---CCCCc---C------C----CCC-ceEEe-c-cCCCeeEec
Q 026789 52 FTVGDTLVFNFAAG---NHDVTRV-TQSSFNACNTT---SPLSR---T------T----NSP-ASVTL-T-ASGPHYFIC 108 (233)
Q Consensus 52 f~vGD~L~F~y~~~---~H~V~~V-~~~~y~~C~~~---~~~~~---~------~----~G~-~~v~l-~-~~G~~yFic 108 (233)
+-.|-.|.|+|.+. .|++..| +...+..|... +.+.. . . .|. ....+ + .+|.||+.|
T Consensus 90 VPAGw~V~i~f~N~~~l~Hnl~iv~~~~~~p~~~~i~~DgkIl~~~G~s~~~~~~~GI~~G~s~~~~~~~l~aG~YwlvC 169 (196)
T PF06525_consen 90 VPAGWNVQITFTNQESLPHNLVIVQNDTPTPNNPPISSDGKILLYVGASPGNYTSNGISSGQSASGVYNDLPAGYYWLVC 169 (196)
T ss_pred EcCCCEEEEEEEcCCCCCeeEEEEeCCCCCCCccccCCCCceeeeccCCCCccccCCccCCceeeEEEccCCCceEEEEc
Confidence 45788888888653 5999888 33333444221 11210 0 1 222 22222 2 689999999
Q ss_pred CCCCCCCCCCeeeEEecCCCC
Q 026789 109 SFPGHCLGGQKLAINVSARGS 129 (233)
Q Consensus 109 ~~~~hC~~Gmk~~I~V~~~~a 129 (233)
++.+|-+.||-..+.|++.-.
T Consensus 170 ~ipGHA~sGMw~~LiVs~~vt 190 (196)
T PF06525_consen 170 GIPGHAESGMWGVLIVSSNVT 190 (196)
T ss_pred cCCChhhcCCEEEEEEecCcc
Confidence 999999999999999987654
No 13
>PF13473 Cupredoxin_1: Cupredoxin-like domain; PDB: 1IBZ_D 1IC0_E 1IBY_D.
Probab=96.38 E-value=0.0019 Score=49.30 Aligned_cols=65 Identities=18% Similarity=0.296 Sum_probs=30.6
Q ss_pred cCeeeeeCCEEEEEec---CCCceEEEEcCCCCCcCCCCCCCCcCCCCCceEEe--ccCCCeeEecCCCCCCCCCCeeeE
Q 026789 48 ANQTFTVGDTLVFNFA---AGNHDVTRVTQSSFNACNTTSPLSRTTNSPASVTL--TASGPHYFICSFPGHCLGGQKLAI 122 (233)
Q Consensus 48 ~~~~f~vGD~L~F~y~---~~~H~V~~V~~~~y~~C~~~~~~~~~~~G~~~v~l--~~~G~~yFic~~~~hC~~Gmk~~I 122 (233)
+..+++.|+.+.+.+. ...|+++.-. ++. . .....+...++++ +++|.|=|+|+++.+ ||..|
T Consensus 35 ~~i~v~~G~~v~l~~~N~~~~~h~~~i~~---~~~---~--~~l~~g~~~~~~f~~~~~G~y~~~C~~~~~----m~G~l 102 (104)
T PF13473_consen 35 STITVKAGQPVTLTFTNNDSRPHEFVIPD---LGI---S--KVLPPGETATVTFTPLKPGEYEFYCTMHPN----MKGTL 102 (104)
T ss_dssp -EEEEETTCEEEEEEEE-SSS-EEEEEGG---GTE---E--EEE-TT-EEEEEEEE-S-EEEEEB-SSS-T----TB---
T ss_pred CEEEEcCCCeEEEEEEECCCCcEEEEECC---Cce---E--EEECCCCEEEEEEcCCCCEEEEEEcCCCCc----ceecc
Confidence 5789999994444443 2347775421 000 0 0112233355666 899999999997652 77766
Q ss_pred Ee
Q 026789 123 NV 124 (233)
Q Consensus 123 ~V 124 (233)
.|
T Consensus 103 iV 104 (104)
T PF13473_consen 103 IV 104 (104)
T ss_dssp --
T ss_pred cC
Confidence 54
No 14
>TIGR03096 nitroso_cyanin nitrosocyanin. Nitrosocyanin, as described from the obligate chemolithoautotroph Nitrosomonas europaea, is a red copper protein of unknown function with sequence similarity to a number of blue copper redox proteins.
Probab=96.14 E-value=0.015 Score=47.21 Aligned_cols=64 Identities=9% Similarity=0.126 Sum_probs=39.5
Q ss_pred CCccccccCeeeeeCCEEEEEecCC---CceEEEEcCCCCCcCCCCCCCCcCCCC-C--ceEEeccCCCeeEecCCCCCC
Q 026789 41 ATYSNWAANQTFTVGDTLVFNFAAG---NHDVTRVTQSSFNACNTTSPLSRTTNS-P--ASVTLTASGPHYFICSFPGHC 114 (233)
Q Consensus 41 ~~Y~~Wa~~~~f~vGD~L~F~y~~~---~H~V~~V~~~~y~~C~~~~~~~~~~~G-~--~~v~l~~~G~~yFic~~~~hC 114 (233)
.+|.-=.+.++++.||.|.+.+.+. .|++.. .+|. .+ .....| . .+++.+++|.|.|+|+. ||
T Consensus 54 ~n~~~~P~~I~VkaGD~Vtl~vtN~d~~~H~f~i---~~~g---is---~~I~pGet~TitF~adKpG~Y~y~C~~--HP 122 (135)
T TIGR03096 54 FNVLNEPEALVVKKGTPVKVTVENKSPISEGFSI---DAYG---IS---EVIKAGETKTISFKADKAGAFTIWCQL--HP 122 (135)
T ss_pred eeeEEcCCEEEECCCCEEEEEEEeCCCCccceEE---CCCC---cc---eEECCCCeEEEEEECCCCEEEEEeCCC--CC
Confidence 3455555778999999998877542 255544 2221 11 111223 2 35666899999999995 56
Q ss_pred C
Q 026789 115 L 115 (233)
Q Consensus 115 ~ 115 (233)
.
T Consensus 123 ~ 123 (135)
T TIGR03096 123 K 123 (135)
T ss_pred h
Confidence 4
No 15
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=96.00 E-value=0.019 Score=58.11 Aligned_cols=11 Identities=9% Similarity=0.235 Sum_probs=5.7
Q ss_pred eeeecC---CCCcc
Q 026789 197 THVVGG---ALGWT 207 (233)
Q Consensus 197 ~~~VG~---~~GW~ 207 (233)
.|+|-. ...|.
T Consensus 619 ~~k~e~~Mrr~nW~ 632 (1102)
T KOG1924|consen 619 VYKPEVPMRRFNWS 632 (1102)
T ss_pred cCCCCCccccCCcc
Confidence 466654 34464
No 16
>KOG3858 consensus Ephrin, ligand for Eph receptor tyrosine kinase [Signal transduction mechanisms]
Probab=95.76 E-value=0.035 Score=48.89 Aligned_cols=80 Identities=21% Similarity=0.419 Sum_probs=48.6
Q ss_pred eeeeeCCEEEE---EecCCC------ceEEEEcCCCCCcCCC-CCCCC------------------cCCCCCceEEeccC
Q 026789 50 QTFTVGDTLVF---NFAAGN------HDVTRVTQSSFNACNT-TSPLS------------------RTTNSPASVTLTAS 101 (233)
Q Consensus 50 ~~f~vGD~L~F---~y~~~~------H~V~~V~~~~y~~C~~-~~~~~------------------~~~~G~~~v~l~~~ 101 (233)
+.+++||.|-+ +|+.+. .=+++|++.+|+.|+. +.+.. .++--...+++..-
T Consensus 45 I~v~igD~ldIiCP~~e~~~~~~~E~yilYmV~~~~y~~C~~~s~~~~~~~C~rP~~~~kfsikFq~ftP~p~G~EF~pG 124 (233)
T KOG3858|consen 45 IYVQIGDYLDIICPHYEEGGPEGYEYYILYMVSEEEYDLCELRSKPFKRWECNRPSTPLKFSIKFQRFTPFPLGFEFQPG 124 (233)
T ss_pred EEeccCCEEEEECCCCCCCCCCcceEEEEEEeChHHhhhhhccCCCcEEEEecCCCcchhhhhhheecCCCCCCccccCC
Confidence 45678999988 565432 2356899999999996 33221 11211223444433
Q ss_pred CCeeEecCC-----------CCCCCC-CCeeeEEecCCCC
Q 026789 102 GPHYFICSF-----------PGHCLG-GQKLAINVSARGS 129 (233)
Q Consensus 102 G~~yFic~~-----------~~hC~~-Gmk~~I~V~~~~a 129 (233)
-+||||++- ++-|.. .||+.+.|.....
T Consensus 125 ~~YY~IStStg~~~g~~~~~ggvc~~~~mk~~~~V~~~~~ 164 (233)
T KOG3858|consen 125 HTYYYISTSTGDAEGLCNLRGGVCVTRNMKLLMKVGQSPR 164 (233)
T ss_pred CeEEEEeCCCccccccchhhCCEeccCCceEEEEecccCC
Confidence 367777763 345654 5999999977544
No 17
>TIGR03094 sulfo_cyanin sulfocyanin. Members of this family are blue-copper redox proteins designated sulfocyanin, from the archaeal genera Sulfolobus, Ferroplasma, and Picrophilus. The most closely related proteins characterized as functionally different are the rustacyanins.
Probab=94.08 E-value=0.045 Score=46.55 Aligned_cols=31 Identities=26% Similarity=0.516 Sum_probs=27.3
Q ss_pred ccCCCeeEecCCCCCCCCCCeeeEEecCCCC
Q 026789 99 TASGPHYFICSFPGHCLGGQKLAINVSARGS 129 (233)
Q Consensus 99 ~~~G~~yFic~~~~hC~~Gmk~~I~V~~~~a 129 (233)
..+|.||+.|++.+|-+.||-..+.|++.-.
T Consensus 159 ~~~G~YwlvCgipGHAesGMw~~lIVSs~vt 189 (195)
T TIGR03094 159 TSAGKYWLVCGITGHAESGMWAVVIVSSNVT 189 (195)
T ss_pred CCCeeEEEEcccCChhhcCcEEEEEEecCcc
Confidence 3789999999999999999999999877543
No 18
>PF00812 Ephrin: Ephrin; InterPro: IPR001799 Ephrins are a family of proteins [] that are ligands of class V (EPH-related) receptor protein-tyrosine kinases (see IPR001426 from INTERPRO). These receptors and their ligands have been implicated in regulating neuronal axon guidance and in patterning of the developing nervous system and may also serve a patterning and compartmentalisation role outside of the nervous system as well. Ephrins are membrane-attached proteins of 205 to 340 residues. Attachment appears to be crucial for their normal function. Type-A ephrins are linked to the membrane via a glycosylphosphatidylinositol (GPI)-linkage, while type-B ephrins are type-I membrane proteins.; GO: 0016020 membrane; PDB: 3HEI_P 3CZU_B 3MBW_B 1KGY_E 1IKO_P 2WO3_B 2I85_A 2VSK_B 3GXU_B 2VSM_B ....
Probab=93.29 E-value=0.032 Score=45.84 Aligned_cols=35 Identities=20% Similarity=0.403 Sum_probs=25.1
Q ss_pred CeeeeeCCEEEE---EecCC--------CceEEEEcCCCCCcCCCC
Q 026789 49 NQTFTVGDTLVF---NFAAG--------NHDVTRVTQSSFNACNTT 83 (233)
Q Consensus 49 ~~~f~vGD~L~F---~y~~~--------~H~V~~V~~~~y~~C~~~ 83 (233)
...+++||.|-| +|... ...+++|++.+|+.|+..
T Consensus 23 ~i~V~i~D~ldIiCP~~~~~~~~~~~~E~~~lY~Vs~~~y~~C~~~ 68 (145)
T PF00812_consen 23 VIEVRIGDYLDIICPHYEPGGPPPEEYEYYILYMVSEEGYESCSLT 68 (145)
T ss_dssp EEEE-TTEEEEEEE--SSSSSSSCSSS-BEEEEEE-HHHHHHTBSS
T ss_pred EEEecCCCEEEEECCCCCCCCCCCCCceEEEEEEEcHHHhcccCCC
Confidence 357789999998 55443 467889999999999953
No 19
>TIGR02695 azurin azurin. Azurin is a blue copper-binding protein in the plastocyanin/azurin family (see Pfam model pfam00127). It serves as a redox partner to enzymes such as nitrite reductase or arsenite oxidase. The most closely related copper-binding proteins to this family are auracyanins, as in Chloroflexus aurantiacus, which have similar redox activities.
Probab=91.88 E-value=0.99 Score=36.20 Aligned_cols=30 Identities=37% Similarity=0.659 Sum_probs=23.0
Q ss_pred CceEEec----cCCC-eeEecCCCCCCCCCCeeeEE
Q 026789 93 PASVTLT----ASGP-HYFICSFPGHCLGGQKLAIN 123 (233)
Q Consensus 93 ~~~v~l~----~~G~-~yFic~~~~hC~~Gmk~~I~ 123 (233)
.++|+++ ++|. |=|+|++++|=. .||..+.
T Consensus 90 s~svtF~~~~l~~g~~Y~f~CSFPGH~~-~MkG~l~ 124 (125)
T TIGR02695 90 KTSVTFDVSKLSAGEDYTFFCSFPGHWA-MMRGTVK 124 (125)
T ss_pred eEEEEEECCCCCCCCcceEEEcCCCcHH-hceEEEe
Confidence 3667775 3675 779999999986 6988765
No 20
>TIGR02376 Cu_nitrite_red nitrite reductase, copper-containing. This family consists of copper-type nitrite reductase. It reduces nitrite to nitric oxide, the first step in denitrification.
Probab=90.67 E-value=0.59 Score=42.74 Aligned_cols=76 Identities=20% Similarity=0.240 Sum_probs=48.2
Q ss_pred CeeeeeCCEEEEEecCC-----CceEEEEcCCCCCcCCCCCCCCcCCCC-C--ceEEeccCCCeeEecCC----CCCCCC
Q 026789 49 NQTFTVGDTLVFNFAAG-----NHDVTRVTQSSFNACNTTSPLSRTTNS-P--ASVTLTASGPHYFICSF----PGHCLG 116 (233)
Q Consensus 49 ~~~f~vGD~L~F~y~~~-----~H~V~~V~~~~y~~C~~~~~~~~~~~G-~--~~v~l~~~G~~yFic~~----~~hC~~ 116 (233)
..+++.||.|++++.+. .|++..=-.... +..........| . ..|+++.+|+|||.|.. ..|-..
T Consensus 60 ~irv~~Gd~v~v~v~N~~~~~~~h~~h~H~~~~~---dg~~~~~~I~PG~t~ty~F~~~~~Gty~YH~H~~~~~~~q~~~ 136 (311)
T TIGR02376 60 LIRVHEGDYVELTLINPPTNTMPHNVDFHAATGA---LGGAALTQVNPGETATLRFKATRPGAFVYHCAPPGMVPWHVVS 136 (311)
T ss_pred eEEEECCCEEEEEEEeCCCCCCceeeeecCCCcc---CCCCcceeECCCCeEEEEEEcCCCEEEEEEcCCCCchhHHhhc
Confidence 57889999999888764 466543100000 000111112223 2 46777889999999995 347788
Q ss_pred CCeeeEEecCC
Q 026789 117 GQKLAINVSAR 127 (233)
Q Consensus 117 Gmk~~I~V~~~ 127 (233)
||...+.|...
T Consensus 137 Gl~G~liV~~~ 147 (311)
T TIGR02376 137 GMNGAIMVLPR 147 (311)
T ss_pred CcceEEEeecc
Confidence 99999999754
No 21
>PRK10378 inactive ferrous ion transporter periplasmic protein EfeO; Provisional
Probab=90.24 E-value=2.1 Score=40.34 Aligned_cols=30 Identities=17% Similarity=0.235 Sum_probs=21.2
Q ss_pred CceEEeccCCCeeEecCCCCCCCCCCeeeEEecCC
Q 026789 93 PASVTLTASGPHYFICSFPGHCLGGQKLAINVSAR 127 (233)
Q Consensus 93 ~~~v~l~~~G~~yFic~~~~hC~~Gmk~~I~V~~~ 127 (233)
...++| ++|.|-|+|+. | ..|+..|.|...
T Consensus 89 ~l~~~L-~pGtY~~~C~~--~--~~~~g~l~Vtg~ 118 (375)
T PRK10378 89 KMTANL-QPGEYDMTCGL--L--TNPKGKLIVKGE 118 (375)
T ss_pred EEEEec-CCceEEeecCc--C--CCCCceEEEeCC
Confidence 345556 69999999976 4 335777888654
No 22
>PLN02604 oxidoreductase
Probab=88.58 E-value=2.6 Score=41.70 Aligned_cols=81 Identities=11% Similarity=0.096 Sum_probs=49.7
Q ss_pred cccCeeeeeCCEEEEEecCCC----ceEE-----EEcCCCCCcCCCCCCCCcCCCC---CceEEeccCCCeeEecCCCCC
Q 026789 46 WAANQTFTVGDTLVFNFAAGN----HDVT-----RVTQSSFNACNTTSPLSRTTNS---PASVTLTASGPHYFICSFPGH 113 (233)
Q Consensus 46 Wa~~~~f~vGD~L~F~y~~~~----H~V~-----~V~~~~y~~C~~~~~~~~~~~G---~~~v~l~~~G~~yFic~~~~h 113 (233)
....++++.||.|++++.+.. |++. +.....+|.= ..-.......| ..+|+++..|++||-|-...|
T Consensus 53 pgP~i~~~~Gd~v~v~v~N~l~~~~~~iH~HG~~~~~~~~~DG~-~~~tq~~i~pg~s~~y~f~~~~~Gt~wyH~H~~~q 131 (566)
T PLN02604 53 PGPTILAQQGDTVIVELKNSLLTENVAIHWHGIRQIGTPWFDGT-EGVTQCPILPGETFTYEFVVDRPGTYLYHAHYGMQ 131 (566)
T ss_pred CCCcEEEECCCEEEEEEEeCCCCCCCCEEeCCCCCCCCccccCC-CccccCccCCCCeEEEEEEcCCCEEEEEeeCcHHH
Confidence 345688999999999887541 2222 1100001110 00000011223 246777899999999999999
Q ss_pred CCCCCeeeEEecCC
Q 026789 114 CLGGQKLAINVSAR 127 (233)
Q Consensus 114 C~~Gmk~~I~V~~~ 127 (233)
-..||...|.|...
T Consensus 132 ~~~Gl~G~liV~~~ 145 (566)
T PLN02604 132 REAGLYGSIRVSLP 145 (566)
T ss_pred HhCCCeEEEEEEec
Confidence 99999999998754
No 23
>PLN02354 copper ion binding / oxidoreductase
Probab=88.06 E-value=6.6 Score=38.86 Aligned_cols=76 Identities=20% Similarity=0.198 Sum_probs=49.3
Q ss_pred CeeeeeCCEEEEEecCC--------CceEEEEcCCCCC-----cCCCCCCCCcCCCCCceEEe-ccCCCeeEecCCCCCC
Q 026789 49 NQTFTVGDTLVFNFAAG--------NHDVTRVTQSSFN-----ACNTTSPLSRTTNSPASVTL-TASGPHYFICSFPGHC 114 (233)
Q Consensus 49 ~~~f~vGD~L~F~y~~~--------~H~V~~V~~~~y~-----~C~~~~~~~~~~~G~~~v~l-~~~G~~yFic~~~~hC 114 (233)
.++++.||+|+.+..+. -|.+.|......| .| +|.-..+=..+|++ +..|++||-+-...|-
T Consensus 59 ~I~~~~GD~v~V~v~N~l~~~ttiHWHGi~q~~~~~~DGv~~TQc----pI~PG~sf~Y~F~~~~q~GT~WYHsH~~~Q~ 134 (552)
T PLN02354 59 NINSTSNNNIVINVFNNLDEPFLLTWSGIQQRKNSWQDGVPGTNC----PIPPGTNFTYHFQPKDQIGSYFYYPSTGMHR 134 (552)
T ss_pred cEEEeCCCEEEEEEEECCCCCcccccccccCCCCcccCCCcCCcC----CCCCCCcEEEEEEeCCCCcceEEecCcccee
Confidence 46789999999987653 2555443111112 23 22221222356776 4789999999888888
Q ss_pred CCCCeeeEEecCCC
Q 026789 115 LGGQKLAINVSARG 128 (233)
Q Consensus 115 ~~Gmk~~I~V~~~~ 128 (233)
..||...|.|....
T Consensus 135 ~~Gl~G~lII~~~~ 148 (552)
T PLN02354 135 AAGGFGGLRVNSRL 148 (552)
T ss_pred cCCccceEEEcCCc
Confidence 88999999887543
No 24
>PF07174 FAP: Fibronectin-attachment protein (FAP); InterPro: IPR010801 This family contains bacterial fibronectin-attachment proteins (FAP). Family members are rich in alanine and proline, are approximately 300 long, and seem to be restricted to mycobacteria. These proteins contain a fibronectin-binding motif that allows mycobacteria to bind to fibronectin in the extracellular matrix [].; GO: 0050840 extracellular matrix binding, 0005576 extracellular region
Probab=87.98 E-value=4.5 Score=36.61 Aligned_cols=14 Identities=21% Similarity=0.667 Sum_probs=7.9
Q ss_pred CCCccCCCCCCcch
Q 026789 203 ALGWTVPPNASVGY 216 (233)
Q Consensus 203 ~~GW~~~~~~~~~Y 216 (233)
-.||.....+.-.|
T Consensus 124 P~GW~~Sda~~L~y 137 (297)
T PF07174_consen 124 PAGWVESDASHLDY 137 (297)
T ss_pred cCCccccccceeec
Confidence 67888664333334
No 25
>PF07732 Cu-oxidase_3: Multicopper oxidase; InterPro: IPR011707 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 3 (or coupled binuclear) domains. ; GO: 0005507 copper ion binding; PDB: 2QT6_B 3KW7_B 2R7E_A 3CDZ_A 1SDD_A 3G5W_D 3UAC_A 2YXV_A 3OD3_A 3NSY_A ....
Probab=87.74 E-value=0.18 Score=39.58 Aligned_cols=79 Identities=16% Similarity=0.175 Sum_probs=47.2
Q ss_pred cCeeeeeCCEEEEEecCC---CceEEEE----cCC-CCCc--CCCCCCCCcCCCCCceEEecc-CCCeeEecCCCCCCCC
Q 026789 48 ANQTFTVGDTLVFNFAAG---NHDVTRV----TQS-SFNA--CNTTSPLSRTTNSPASVTLTA-SGPHYFICSFPGHCLG 116 (233)
Q Consensus 48 ~~~~f~vGD~L~F~y~~~---~H~V~~V----~~~-~y~~--C~~~~~~~~~~~G~~~v~l~~-~G~~yFic~~~~hC~~ 116 (233)
..+.++.||.|.+++.+. .++|--= ... ..|. .....++.-..+-...|+++. +|.+||-|-...|=..
T Consensus 26 PtI~v~~Gd~v~i~~~N~l~~~~siH~HG~~~~~~~~~DG~~~~~~~~i~pG~~~~Y~~~~~~~~Gt~wYH~H~~~~~~~ 105 (117)
T PF07732_consen 26 PTIRVREGDTVRITVTNNLDEPTSIHWHGLHQPPSPWMDGVPGVTQCPIAPGESFTYEFTANQQAGTYWYHSHVHGQQVM 105 (117)
T ss_dssp EEEEEETTEEEEEEEEEESSSGBSEEEETSBSTTGGGGSGGTTTSGSSBSTTEEEEEEEEESSCSEEEEEEECSTTHHHT
T ss_pred CEEEEEcCCeeEEEEEeccccccccccceeeeeeeeecCCcccccceeEEeecceeeeEeeeccccceeEeeCCCchhcC
Confidence 457899999999988753 2444321 111 0111 001111111111235778887 9999999999886558
Q ss_pred CCeeeEEecC
Q 026789 117 GQKLAINVSA 126 (233)
Q Consensus 117 Gmk~~I~V~~ 126 (233)
||-..|.|..
T Consensus 106 GL~G~~iV~~ 115 (117)
T PF07732_consen 106 GLYGAIIVEP 115 (117)
T ss_dssp TEEEEEEEE-
T ss_pred cCEEEEEEcC
Confidence 9998888864
No 26
>PRK02888 nitrous-oxide reductase; Validated
Probab=87.62 E-value=1.5 Score=44.01 Aligned_cols=67 Identities=13% Similarity=0.301 Sum_probs=42.9
Q ss_pred cCeeeeeCCEEEEEecCC------CceEEEEcCCCCCcCCCCCCCC-cCCCC---CceEEeccCCCeeEecCCCCCCCC-
Q 026789 48 ANQTFTVGDTLVFNFAAG------NHDVTRVTQSSFNACNTTSPLS-RTTNS---PASVTLTASGPHYFICSFPGHCLG- 116 (233)
Q Consensus 48 ~~~~f~vGD~L~F~y~~~------~H~V~~V~~~~y~~C~~~~~~~-~~~~G---~~~v~l~~~G~~yFic~~~~hC~~- 116 (233)
+..++++||.+.|...+- .|.... ..|. +. ....| ...|+.+++|.|||+|+. .|..
T Consensus 555 ~~i~Vk~GDeVt~~lTN~d~~~DViHGF~I---p~~n-------I~~dv~PG~t~svtF~adkPGvy~~~Cte--fCGa~ 622 (635)
T PRK02888 555 REFTVKQGDEVTVIVTNLDKVEDLTHGFAI---PNYG-------VNMEVAPQATASVTFTADKPGVYWYYCTW--FCHAL 622 (635)
T ss_pred ceEEecCCCEEEEEEEeCCcccccccceee---cccC-------ccEEEcCCceEEEEEEcCCCEEEEEECCc--ccccC
Confidence 457899999999999762 233332 1111 11 11222 245667899999999995 4654
Q ss_pred --CCeeeEEecC
Q 026789 117 --GQKLAINVSA 126 (233)
Q Consensus 117 --Gmk~~I~V~~ 126 (233)
+|+..|.|..
T Consensus 623 H~~M~G~~iVep 634 (635)
T PRK02888 623 HMEMRGRMLVEP 634 (635)
T ss_pred cccceEEEEEEe
Confidence 6888888753
No 27
>PLN02168 copper ion binding / pectinesterase
Probab=84.09 E-value=12 Score=37.13 Aligned_cols=80 Identities=16% Similarity=0.093 Sum_probs=49.8
Q ss_pred CeeeeeCCEEEEEecCCC--------ceEEEEcCCCCCc-CCCCCCCCcCCCCCceEEec-cCCCeeEecCCCCCCCCCC
Q 026789 49 NQTFTVGDTLVFNFAAGN--------HDVTRVTQSSFNA-CNTTSPLSRTTNSPASVTLT-ASGPHYFICSFPGHCLGGQ 118 (233)
Q Consensus 49 ~~~f~vGD~L~F~y~~~~--------H~V~~V~~~~y~~-C~~~~~~~~~~~G~~~v~l~-~~G~~yFic~~~~hC~~Gm 118 (233)
.++++.||.|+.+..+.- |.+.+......|. ....-+|.-..+=..+|++. ..|++||-|-...|-..|+
T Consensus 58 ~I~~~~GD~v~V~v~N~L~~~ttiHWHGl~~~~~~~~DGv~gtQcpI~PG~sftY~F~~~~q~GT~WYHsH~~~Q~~~GL 137 (545)
T PLN02168 58 LLNATANDVINVNIFNNLTEPFLMTWNGLQLRKNSWQDGVRGTNCPILPGTNWTYRFQVKDQIGSYFYFPSLLLQKAAGG 137 (545)
T ss_pred cEEEECCCEEEEEEEeCCCCCccEeeCCccCCCCCCcCCCCCCcCCCCCCCcEEEEEEeCCCCceEEEecChhhhhhCcc
Confidence 578999999999887641 5544432211121 00111232222223578874 7999999988777777899
Q ss_pred eeeEEecCCC
Q 026789 119 KLAINVSARG 128 (233)
Q Consensus 119 k~~I~V~~~~ 128 (233)
...|.|....
T Consensus 138 ~G~lII~~~~ 147 (545)
T PLN02168 138 YGAIRIYNPE 147 (545)
T ss_pred eeEEEEcCCc
Confidence 9999887644
No 28
>PF10731 Anophelin: Thrombin inhibitor from mosquito; InterPro: IPR018932 Members of this family are all inhibitors of thrombin, the peptidase that is at the end of the blood coagulation cascade and which creates the clot by cleaving fibrinogen. The interaction between thrombin and fibrinogen involves two different areas of contact - via the thrombin active site and via a second substrate-binding site known as an exosite. The inhibitor acts by blocking the exosite, rather than by interacting with the active site. The inhibitors are from mosquitoes that feed on human blood and which, by inhibiting thrombin, prevent the blood from clotting and keep it flowing.
Probab=84.07 E-value=0.76 Score=32.22 Aligned_cols=31 Identities=19% Similarity=0.270 Sum_probs=24.3
Q ss_pred ChhHHHHHHHHHHHHhhhcccceEEEecCCC
Q 026789 1 MFNRFFLAAIAIAALVQSSTAQTRHVVGDAL 31 (233)
Q Consensus 1 m~~~~~~~~~~~~~l~~~~~a~~~~~VGg~~ 31 (233)
|++|+++++|++++|+....++-+|.-|+.-
T Consensus 1 MA~Kl~vialLC~aLva~vQ~APQYa~GeeP 31 (65)
T PF10731_consen 1 MASKLIVIALLCVALVAIVQSAPQYAPGEEP 31 (65)
T ss_pred CcchhhHHHHHHHHHHHHHhcCcccCCCCCC
Confidence 8999999888877777766666688778753
No 29
>PF00116 COX2: Cytochrome C oxidase subunit II, periplasmic domain This family corresponds to chains b and o.; InterPro: IPR002429 Cytochrome c oxidase (1.9.3.1 from EC) [, ] is an oligomeric enzymatic complex which is a component of the respiratory chain and is involved in the transfer of electrons from cytochrome c to oxygen. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. The number of polypeptides in the complex ranges from 3-4 (prokaryotes), up to 13(mammals). Subunit 2 (CO II) transfers the electrons from cytochrome c to the catalytic subunit 1. It contains two adjacent transmembrane regions in its N terminus and the major part of the protein is exposed to the periplasmic or to the mitochondrial intermembrane space, respectively. CO II provides the substrate-binding site and contains a copper centre called Cu(A), probably the primary acceptor in cytochrome c oxidase. An exception is the corresponding subunit of the cbb3-type oxidase which lacks the copper A redox-centre. Several bacterial CO II have a C-terminal extension that contains a covalently bound haem c.; GO: 0004129 cytochrome-c oxidase activity, 0005507 copper ion binding, 0016020 membrane; PDB: 3OMN_D 3OMA_B 3OMI_D 3OM3_B 3EHB_B 1AR1_B 1QLE_B 3HB3_B 2IWK_B 2IWF_A ....
Probab=83.95 E-value=2.4 Score=33.39 Aligned_cols=66 Identities=15% Similarity=0.235 Sum_probs=42.2
Q ss_pred ccCeeeeeCCEEEEEecCC--CceEEEEcCCCCCcCCCCCCCCc-CCCCC---ceEEeccCCCeeEecCCCCCCCCC---
Q 026789 47 AANQTFTVGDTLVFNFAAG--NHDVTRVTQSSFNACNTTSPLSR-TTNSP---ASVTLTASGPHYFICSFPGHCLGG--- 117 (233)
Q Consensus 47 a~~~~f~vGD~L~F~y~~~--~H~V~~V~~~~y~~C~~~~~~~~-~~~G~---~~v~l~~~G~~yFic~~~~hC~~G--- 117 (233)
.+...+..|+.+.|+..+. .|+...- ++. ++. ...|. ..++.+++|.|++.|+ ..|..|
T Consensus 45 ~~~l~lp~g~~v~~~ltS~DViHsf~ip---~~~-------~k~d~~PG~~~~~~~~~~~~G~y~~~C~--e~CG~gH~~ 112 (120)
T PF00116_consen 45 DNELVLPAGQPVRFHLTSEDVIHSFWIP---ELG-------IKMDAIPGRTNSVTFTPDKPGTYYGQCA--EYCGAGHSF 112 (120)
T ss_dssp SSEEEEETTSEEEEEEEESSS-EEEEET---TCT-------EEEEEBTTCEEEEEEEESSSEEEEEEE---SSSSTTGGG
T ss_pred cceecccccceEeEEEEcCCcccccccc---ccC-------cccccccccceeeeeeeccCCcEEEcCc--cccCcCcCC
Confidence 3456778999999988753 3666541 111 111 12332 4677789999999999 689887
Q ss_pred CeeeEEe
Q 026789 118 QKLAINV 124 (233)
Q Consensus 118 mk~~I~V 124 (233)
|++.|.|
T Consensus 113 M~~~v~V 119 (120)
T PF00116_consen 113 MPGKVIV 119 (120)
T ss_dssp -EEEEEE
T ss_pred CeEEEEE
Confidence 8877776
No 30
>PLN02835 oxidoreductase
Probab=83.73 E-value=12 Score=36.99 Aligned_cols=79 Identities=19% Similarity=0.186 Sum_probs=48.5
Q ss_pred CeeeeeCCEEEEEecCC--------CceEEEEcCCCCCc-CCCCCCCCcCCCCCceEEe-ccCCCeeEecCCCCCCCCCC
Q 026789 49 NQTFTVGDTLVFNFAAG--------NHDVTRVTQSSFNA-CNTTSPLSRTTNSPASVTL-TASGPHYFICSFPGHCLGGQ 118 (233)
Q Consensus 49 ~~~f~vGD~L~F~y~~~--------~H~V~~V~~~~y~~-C~~~~~~~~~~~G~~~v~l-~~~G~~yFic~~~~hC~~Gm 118 (233)
.++++.||+|+.+..+. -|.+.+......|. ....-+|.-..+=..+|++ +..|+|||-|-...|-..|+
T Consensus 61 ~I~~~~GD~v~v~v~N~L~~~ttiHWHGl~~~~~~~~DGv~~tQ~pI~PG~sf~Y~F~~~~q~GT~WYHsH~~~q~~~Gl 140 (539)
T PLN02835 61 RLDVVTNDNIILNLINKLDQPFLLTWNGIKQRKNSWQDGVLGTNCPIPPNSNYTYKFQTKDQIGTFTYFPSTLFHKAAGG 140 (539)
T ss_pred CEEEECCCEEEEEEEeCCCCCCcEEeCCcccCCCCCCCCCccCcCCCCCCCcEEEEEEECCCCEeEEEEeCccchhcCcc
Confidence 57899999999988654 24444432211221 0001122222222356666 57999999998888888899
Q ss_pred eeeEEecCC
Q 026789 119 KLAINVSAR 127 (233)
Q Consensus 119 k~~I~V~~~ 127 (233)
...+.|...
T Consensus 141 ~G~lIV~~~ 149 (539)
T PLN02835 141 FGAINVYER 149 (539)
T ss_pred cceeEEeCC
Confidence 988888543
No 31
>TIGR02866 CoxB cytochrome c oxidase, subunit II. Cytochrome c oxidase is the terminal electron acceptor of mitochondria (and one of several possible acceptors in prokaryotes) in the electron transport chain of aerobic respiration. The enzyme couples the oxidation of reduced cytochrome c with the reduction of molecular oxygen to water. This process results in the pumping of four protons across the membrane which are used in the proton gradient powered synthesis of ATP. The oxidase contains two heme a cofactors and three copper atoms as well as other bound ions.
Probab=82.24 E-value=3.3 Score=35.34 Aligned_cols=85 Identities=13% Similarity=0.112 Sum_probs=51.5
Q ss_pred EEEecCCCCCccCCCCCCCcccc------ccCeeeeeCCEEEEEecCC--CceEEEEcCCCCCcCCCCCCCCcC-CCCC-
Q 026789 24 RHVVGDALGWIVPPNGPATYSNW------AANQTFTVGDTLVFNFAAG--NHDVTRVTQSSFNACNTTSPLSRT-TNSP- 93 (233)
Q Consensus 24 ~~~VGg~~GW~~~~~~~~~Y~~W------a~~~~f~vGD~L~F~y~~~--~H~V~~V~~~~y~~C~~~~~~~~~-~~G~- 93 (233)
..++|-.=.|.+ .|.+. .+...+.+|+.+.|+..+. .|+... ..-.++.. -.|.
T Consensus 93 i~v~~~qw~W~f------~Y~~~~~~~~~~~~l~vp~g~~v~~~~ts~DV~Hsf~i----------p~~~~k~da~PG~~ 156 (201)
T TIGR02866 93 VKVEGHQWYWSF------DYPESRRGFTTVNELVVPAGTPVRLQVTSKDVIHSFWV----------PELGGKIDAIPGQY 156 (201)
T ss_pred EEEEEEEeEEEE------EcCCcCCCccccCEEEEEcCCEEEEEEEeCchhhcccc----------cccCceEEecCCcE
Confidence 555666667876 34333 2345678999999987652 133322 11111111 1232
Q ss_pred --ceEEeccCCCeeEecCCCCCCCC---CCeeeEEecC
Q 026789 94 --ASVTLTASGPHYFICSFPGHCLG---GQKLAINVSA 126 (233)
Q Consensus 94 --~~v~l~~~G~~yFic~~~~hC~~---Gmk~~I~V~~ 126 (233)
..++.+++|.|++.|+. .|.. .|++.|.|..
T Consensus 157 ~~~~~~~~~~G~y~~~c~e--~cG~~h~~M~~~v~v~~ 192 (201)
T TIGR02866 157 NALWFNADEPGVYYGYCAE--LCGAGHSLMLFKVVVVE 192 (201)
T ss_pred EEEEEEeCCCEEEEEEehh--hCCcCccCCeEEEEEEC
Confidence 35677899999999995 6655 4898888865
No 32
>TIGR01480 copper_res_A copper-resistance protein, CopA family. This model represents the CopA copper resistance protein family. CopA is related to laccase (benzenediol:oxygen oxidoreductase) and L-ascorbate oxidase, both copper-containing enzymes. Most members have a typical TAT (twin-arginine translocation) signal sequence with an Arg-Arg pair. Twin-arginine translocation is observed for a large number of periplasmic proteins that cross the inner membrane with metal-containing cofactors already bound. The combination of copper-binding sites and TAT translocation motif suggests a mechansism of resistance by packaging and export.
Probab=81.24 E-value=7.3 Score=38.89 Aligned_cols=79 Identities=9% Similarity=0.060 Sum_probs=46.0
Q ss_pred cCeeeeeCCEEEEEecCCCceEEEE-cC-----CCCCc-CCCC-CCCCcCCCCCceEEeccCCCeeEecCCCCCCCCCCe
Q 026789 48 ANQTFTVGDTLVFNFAAGNHDVTRV-TQ-----SSFNA-CNTT-SPLSRTTNSPASVTLTASGPHYFICSFPGHCLGGQK 119 (233)
Q Consensus 48 ~~~~f~vGD~L~F~y~~~~H~V~~V-~~-----~~y~~-C~~~-~~~~~~~~G~~~v~l~~~G~~yFic~~~~hC~~Gmk 119 (233)
-.+.++.||.|+.++.+....-+.+ -. ...|. ...+ .+|.-..+-.++|++...|+|||-|-...+=+.|+.
T Consensus 76 P~ir~~~Gd~v~v~v~N~l~~~tsiHwHGl~~~~~~DGvP~vt~~~I~PG~s~~Y~f~~~~~GTyWYHsH~~~q~~~GL~ 155 (587)
T TIGR01480 76 PLLRWREGDTVRLRVTNTLPEDTSIHWHGILLPFQMDGVPGVSFAGIAPGETFTYRFPVRQSGTYWYHSHSGFQEQAGLY 155 (587)
T ss_pred ceEEEECCCEEEEEEEcCCCCCceEEcCCCcCCccccCCCcccccccCCCCeEEEEEECCCCeeEEEecCchhHhhccce
Confidence 3578899999999887642111111 00 00111 0000 011111111356778899999999988777778998
Q ss_pred eeEEecC
Q 026789 120 LAINVSA 126 (233)
Q Consensus 120 ~~I~V~~ 126 (233)
..|.|..
T Consensus 156 G~lIV~~ 162 (587)
T TIGR01480 156 GPLIIDP 162 (587)
T ss_pred EEEEECC
Confidence 8888864
No 33
>PRK09723 putative fimbrial-like adhesin protein; Provisional
Probab=81.09 E-value=17 Score=34.92 Aligned_cols=11 Identities=27% Similarity=0.546 Sum_probs=7.5
Q ss_pred ceEEEecCCCC
Q 026789 22 QTRHVVGDALG 32 (233)
Q Consensus 22 ~~~~~VGg~~G 32 (233)
...++||+..|
T Consensus 27 ~~~~~vg~~~~ 37 (421)
T PRK09723 27 NVSYIVGNYYG 37 (421)
T ss_pred ceEEEEccccc
Confidence 45788998543
No 34
>PF08139 LPAM_1: Prokaryotic membrane lipoprotein lipid attachment site; InterPro: IPR012640 In prokaryotes, membrane lipoproteins are synthesized with a precursor signal peptide, which is cleaved by a specific lipoprotein signal peptidase (signal peptidase II). The peptidase recognises a conserved sequence and cuts upstream of a cysteine residue to which a glyceride-fatty acid lipid is attached [,]. This lipid attachment site is found in homologues of the VirB proteins of type IV secretion systems (T4SS). Conjugal transfer across the cell envelope of Gram-negative bacteria is mediated by a supramolecular structure termed mating pair formation (Mpf) complex. Collectively, secretion pathways ancestrally related to bacterial conjugation systems are now known as T4SS. T4SS are involved in the delivery of effector molecules to eukaryotic target cells; each of these systems exports distinct DNA or protein substrates to effect a myriad of changes in host cell physiology during infection [].
Probab=81.09 E-value=1.3 Score=25.68 Aligned_cols=18 Identities=17% Similarity=0.403 Sum_probs=11.6
Q ss_pred ChhHHHHHHHHHHHHhhh
Q 026789 1 MFNRFFLAAIAIAALVQS 18 (233)
Q Consensus 1 m~~~~~~~~~~~~~l~~~ 18 (233)
|.||+++.++++.+|..+
T Consensus 6 mmKkil~~l~a~~~LagC 23 (25)
T PF08139_consen 6 MMKKILFPLLALFMLAGC 23 (25)
T ss_pred HHHHHHHHHHHHHHHhhc
Confidence 578888776665555443
No 35
>TIGR03388 ascorbase L-ascorbate oxidase, plant type. Members of this protein family are the copper-containing enzyme L-ascorbate oxidase (EC 1.10.3.3), also called ascorbase. This family is found in flowering plants, and shows greater sequence similarity to a family of laccases (EC 1.10.3.2) from plants than to other known ascorbate oxidases.
Probab=80.46 E-value=3.3 Score=40.66 Aligned_cols=81 Identities=10% Similarity=0.099 Sum_probs=49.8
Q ss_pred cCeeeeeCCEEEEEecCCC----ceEEE----EcCCCC-Cc--CCCCCCCCcCCCCCceEEeccCCCeeEecCCCCCCCC
Q 026789 48 ANQTFTVGDTLVFNFAAGN----HDVTR----VTQSSF-NA--CNTTSPLSRTTNSPASVTLTASGPHYFICSFPGHCLG 116 (233)
Q Consensus 48 ~~~~f~vGD~L~F~y~~~~----H~V~~----V~~~~y-~~--C~~~~~~~~~~~G~~~v~l~~~G~~yFic~~~~hC~~ 116 (233)
..++++.||.|++++.+.. +++.- +....| |. ....-++.-..+-..+|+++..|++||-|-...|-..
T Consensus 32 P~i~~~~Gd~v~v~v~N~l~~~~t~iHwHGl~~~~~~~~DG~~~vtq~~I~PG~s~~y~f~~~~~Gt~wyH~H~~~q~~~ 111 (541)
T TIGR03388 32 PTIRAQAGDTIVVELTNKLHTEGVVIHWHGIRQIGTPWADGTAGVTQCAINPGETFIYNFVVDRPGTYFYHGHYGMQRSA 111 (541)
T ss_pred CeEEEEcCCEEEEEEEECCCCCCccEEecCcCCcCCcccCCCCccccCCcCCCCEEEEEEEcCCCEEEEEEecchHHhhc
Confidence 4578999999999887642 22210 111111 11 0000111111111356778899999999999999999
Q ss_pred CCeeeEEecCCC
Q 026789 117 GQKLAINVSARG 128 (233)
Q Consensus 117 Gmk~~I~V~~~~ 128 (233)
||...|.|....
T Consensus 112 Gl~G~liV~~~~ 123 (541)
T TIGR03388 112 GLYGSLIVDVPD 123 (541)
T ss_pred cceEEEEEecCC
Confidence 999999997653
No 36
>PLN00044 multi-copper oxidase-related protein; Provisional
Probab=79.43 E-value=4.7 Score=40.32 Aligned_cols=76 Identities=20% Similarity=0.203 Sum_probs=50.2
Q ss_pred CeeeeeCCEEEEEecCC--------CceEEEEcCC-----CCCcCCCCCCCCcCCCCCceEEe-ccCCCeeEecCCCCCC
Q 026789 49 NQTFTVGDTLVFNFAAG--------NHDVTRVTQS-----SFNACNTTSPLSRTTNSPASVTL-TASGPHYFICSFPGHC 114 (233)
Q Consensus 49 ~~~f~vGD~L~F~y~~~--------~H~V~~V~~~-----~y~~C~~~~~~~~~~~G~~~v~l-~~~G~~yFic~~~~hC 114 (233)
.++++.||+|+.+..+. -|.+.|.... .+..| +|.-..+=..+|++ +..|++||-+....+-
T Consensus 61 tI~~~~GD~v~V~V~N~L~~~ttIHWHGl~q~~t~w~DGv~~TQc----PI~PG~sftY~F~~~dq~GT~WYHsH~~~Q~ 136 (596)
T PLN00044 61 ALNVTTNWNLVVNVRNALDEPLLLTWHGVQQRKSAWQDGVGGTNC----AIPAGWNWTYQFQVKDQVGSFFYAPSTALHR 136 (596)
T ss_pred cEEEECCCEEEEEEEeCCCCCccEEECCccCCCCccccCCCCCcC----CcCCCCcEEEEEEeCCCCceeEeeccchhhh
Confidence 46789999999987653 2455443111 12224 22222222357778 4899999999888888
Q ss_pred CCCCeeeEEecCCC
Q 026789 115 LGGQKLAINVSARG 128 (233)
Q Consensus 115 ~~Gmk~~I~V~~~~ 128 (233)
..|+...|.|....
T Consensus 137 ~~Gl~GalII~~~~ 150 (596)
T PLN00044 137 AAGGYGAITINNRD 150 (596)
T ss_pred hCcCeeEEEEcCcc
Confidence 88999999997643
No 37
>KOG1263 consensus Multicopper oxidases [Secondary metabolites biosynthesis, transport and catabolism]
Probab=79.13 E-value=21 Score=35.57 Aligned_cols=79 Identities=20% Similarity=0.300 Sum_probs=52.6
Q ss_pred cCeeeeeCCEEEEEecCC--------CceEEEEcCCCC-C-----cCCCCCCCCcCCCCCceEEec-cCCCeeEecCCCC
Q 026789 48 ANQTFTVGDTLVFNFAAG--------NHDVTRVTQSSF-N-----ACNTTSPLSRTTNSPASVTLT-ASGPHYFICSFPG 112 (233)
Q Consensus 48 ~~~~f~vGD~L~F~y~~~--------~H~V~~V~~~~y-~-----~C~~~~~~~~~~~G~~~v~l~-~~G~~yFic~~~~ 112 (233)
-.+.+..||+|+.+..+. -|.|.|. +..| | .| +|.-..+=..+|+++ ..|++||.....-
T Consensus 59 P~I~~~~gD~ivV~v~N~~~~~~sihWhGv~q~-kn~w~DG~~~TqC----PI~Pg~~~tY~F~v~~q~GT~~yh~h~~~ 133 (563)
T KOG1263|consen 59 PTINAEEGDTIVVNVVNRLDEPFSIHWHGVRQR-KNPWQDGVYITQC----PIQPGENFTYRFTVKDQIGTLWYHSHVSW 133 (563)
T ss_pred CeEEEEeCCEEEEEEEeCCCCceEEEecccccc-CCccccCCccccC----CcCCCCeEEEEEEeCCcceeEEEeecccc
Confidence 357789999999877643 2444442 1122 1 13 221111112578887 8899999999999
Q ss_pred CCCCCCeeeEEecCCCCCC
Q 026789 113 HCLGGQKLAINVSARGSSP 131 (233)
Q Consensus 113 hC~~Gmk~~I~V~~~~a~P 131 (233)
|-..|+...+.|......|
T Consensus 134 ~Ra~G~~G~liI~~~~~~p 152 (563)
T KOG1263|consen 134 QRATGVFGALIINPRPGLP 152 (563)
T ss_pred ccccCceeEEEEcCCccCC
Confidence 9999999999998765544
No 38
>COG1622 CyoA Heme/copper-type cytochrome/quinol oxidases, subunit 2 [Energy production and conversion]
Probab=76.35 E-value=6.8 Score=34.88 Aligned_cols=68 Identities=16% Similarity=0.187 Sum_probs=42.2
Q ss_pred CeeeeeCCEEEEEecCC--CceEEEEcCCCCCcCCCCCCCCcC-CCC---CceEEeccCCCeeEecCCCCCCCCC---Ce
Q 026789 49 NQTFTVGDTLVFNFAAG--NHDVTRVTQSSFNACNTTSPLSRT-TNS---PASVTLTASGPHYFICSFPGHCLGG---QK 119 (233)
Q Consensus 49 ~~~f~vGD~L~F~y~~~--~H~V~~V~~~~y~~C~~~~~~~~~-~~G---~~~v~l~~~G~~yFic~~~~hC~~G---mk 119 (233)
...+.+|..|.|+..+. -|+...-.. ..+.+ -.| ...++.+++|.|+.+|+ ..|..| |+
T Consensus 138 ~l~lPv~~~V~f~ltS~DViHsF~IP~l----------~~k~d~iPG~~~~~~~~~~~~G~Y~g~Ca--e~CG~gH~~M~ 205 (247)
T COG1622 138 ELVLPVGRPVRFKLTSADVIHSFWIPQL----------GGKIDAIPGMTTELWLTANKPGTYRGICA--EYCGPGHSFMR 205 (247)
T ss_pred eEEEeCCCeEEEEEEechhceeEEecCC----------CceeeecCCceEEEEEecCCCeEEEEEcH--hhcCCCcccce
Confidence 35667777777777653 133332111 11111 122 23567789999999999 678775 99
Q ss_pred eeEEecCCC
Q 026789 120 LAINVSARG 128 (233)
Q Consensus 120 ~~I~V~~~~ 128 (233)
+.|.|.+..
T Consensus 206 ~~v~vvs~~ 214 (247)
T COG1622 206 FKVIVVSQE 214 (247)
T ss_pred EEEEEEcHH
Confidence 999997643
No 39
>MTH00047 COX2 cytochrome c oxidase subunit II; Provisional
Probab=74.41 E-value=30 Score=29.63 Aligned_cols=32 Identities=22% Similarity=0.202 Sum_probs=26.1
Q ss_pred eEEeccCCCeeEecCCCCCCCCC---CeeeEEecCCC
Q 026789 95 SVTLTASGPHYFICSFPGHCLGG---QKLAINVSARG 128 (233)
Q Consensus 95 ~v~l~~~G~~yFic~~~~hC~~G---mk~~I~V~~~~ 128 (233)
.++.+++|.|+..|+ ..|..| |++.|.|.+..
T Consensus 159 ~~~~~~~G~y~g~C~--e~CG~~H~~M~~~v~v~~~~ 193 (194)
T MTH00047 159 FFCPDRHGVFVGYCS--ELCGVGHSYMPIVIEVVDVD 193 (194)
T ss_pred EEEcCCCEEEEEEee--hhhCcCcccCcEEEEEEcCC
Confidence 456689999999999 688875 99999887653
No 40
>PLN02792 oxidoreductase
Probab=72.79 E-value=11 Score=37.06 Aligned_cols=75 Identities=16% Similarity=0.190 Sum_probs=47.8
Q ss_pred CeeeeeCCEEEEEecCC--------CceEEEEcCCC-----CCcCCCCCCCCcCCCCCceEEe-ccCCCeeEecCCCCCC
Q 026789 49 NQTFTVGDTLVFNFAAG--------NHDVTRVTQSS-----FNACNTTSPLSRTTNSPASVTL-TASGPHYFICSFPGHC 114 (233)
Q Consensus 49 ~~~f~vGD~L~F~y~~~--------~H~V~~V~~~~-----y~~C~~~~~~~~~~~G~~~v~l-~~~G~~yFic~~~~hC 114 (233)
.++++.||+|+.+..+. -|.+.|....- ...| +|.-..+=..+|++ +..|++||-|-...+-
T Consensus 48 ~I~~~~GD~v~V~v~N~L~~~ttiHWHGl~q~~~~~~DGv~~tqc----PI~PG~sftY~F~~~~q~GT~WYHsH~~~q~ 123 (536)
T PLN02792 48 EIRSLTNDNLVINVHNDLDEPFLLSWNGVHMRKNSYQDGVYGTTC----PIPPGKNYTYDFQVKDQVGSYFYFPSLAVQK 123 (536)
T ss_pred cEEEECCCEEEEEEEeCCCCCcCEeCCCcccCCCCccCCCCCCcC----ccCCCCcEEEEEEeCCCccceEEecCcchhh
Confidence 57899999999988764 24554431111 1123 23222222357777 4799999999887777
Q ss_pred CCCCeeeEEecCC
Q 026789 115 LGGQKLAINVSAR 127 (233)
Q Consensus 115 ~~Gmk~~I~V~~~ 127 (233)
..|+...+.|...
T Consensus 124 ~~Gl~G~liI~~~ 136 (536)
T PLN02792 124 AAGGYGSLRIYSL 136 (536)
T ss_pred hcccccceEEeCC
Confidence 7888877776553
No 41
>TIGR01480 copper_res_A copper-resistance protein, CopA family. This model represents the CopA copper resistance protein family. CopA is related to laccase (benzenediol:oxygen oxidoreductase) and L-ascorbate oxidase, both copper-containing enzymes. Most members have a typical TAT (twin-arginine translocation) signal sequence with an Arg-Arg pair. Twin-arginine translocation is observed for a large number of periplasmic proteins that cross the inner membrane with metal-containing cofactors already bound. The combination of copper-binding sites and TAT translocation motif suggests a mechansism of resistance by packaging and export.
Probab=71.22 E-value=9.9 Score=37.95 Aligned_cols=87 Identities=16% Similarity=0.272 Sum_probs=53.2
Q ss_pred CCccCCCCCCCccccccCeeeeeCCEEEEEecCC---CceEE------EE-cCC-CCCcCCCCCCCCcCCCCC--ceEEe
Q 026789 32 GWIVPPNGPATYSNWAANQTFTVGDTLVFNFAAG---NHDVT------RV-TQS-SFNACNTTSPLSRTTNSP--ASVTL 98 (233)
Q Consensus 32 GW~~~~~~~~~Y~~Wa~~~~f~vGD~L~F~y~~~---~H~V~------~V-~~~-~y~~C~~~~~~~~~~~G~--~~v~l 98 (233)
-|++. ...|.. .....++.||.|.+.+.+. .|.+- +| ... .|.. ..+.+.+...+. ..|.+
T Consensus 487 ~wtiN---G~~~~~-~~pl~v~~Gervri~l~N~t~~~HpmHlHG~~f~v~~~~G~~~~--~~dTv~V~Pg~t~~~~f~a 560 (587)
T TIGR01480 487 AWSFD---GEAFGL-KTPLRFNYGERLRVVLVNDTMMAHPIHLHGMWSELEDGQGEFQV--RKHTVDVPPGGKRSFRVTA 560 (587)
T ss_pred EEEEC---CccCCC-CCceEecCCCEEEEEEECCCCCCcceeEcCceeeeecCCCcccc--cCCceeeCCCCEEEEEEEC
Confidence 38883 233333 2357899999999999764 24332 23 111 1111 001122222333 45667
Q ss_pred ccCCCeeEecCCCCCCCCCCeeeEEe
Q 026789 99 TASGPHYFICSFPGHCLGGQKLAINV 124 (233)
Q Consensus 99 ~~~G~~yFic~~~~hC~~Gmk~~I~V 124 (233)
+.+|.++|-|-+..|=+.||-..+.|
T Consensus 561 d~pG~w~~HCH~l~H~~~GM~~~~~v 586 (587)
T TIGR01480 561 DALGRWAYHCHMLLHMEAGMFREVTV 586 (587)
T ss_pred CCCeEEEEcCCCHHHHhCcCcEEEEe
Confidence 89999999999999999999887776
No 42
>PRK13838 conjugal transfer pilin processing protease TraF; Provisional
Probab=71.02 E-value=2 Score=36.19 Aligned_cols=15 Identities=20% Similarity=0.346 Sum_probs=12.3
Q ss_pred CeeeeeCCEEEEEec
Q 026789 49 NQTFTVGDTLVFNFA 63 (233)
Q Consensus 49 ~~~f~vGD~L~F~y~ 63 (233)
...++.||.|+|+..
T Consensus 48 ~~~~~rGDiVvf~~P 62 (176)
T PRK13838 48 DRPVAVGDLVFICPP 62 (176)
T ss_pred CCCCCCCcEEEEECC
Confidence 457899999999864
No 43
>PF07172 GRP: Glycine rich protein family; InterPro: IPR010800 This family consists of glycine rich proteins. Some of them may be involved in resistance to environmental stress [].
Probab=69.25 E-value=3.5 Score=31.46 Aligned_cols=9 Identities=33% Similarity=0.442 Sum_probs=5.8
Q ss_pred ChhHHHHHH
Q 026789 1 MFNRFFLAA 9 (233)
Q Consensus 1 m~~~~~~~~ 9 (233)
|.+|.||++
T Consensus 1 MaSK~~llL 9 (95)
T PF07172_consen 1 MASKAFLLL 9 (95)
T ss_pred CchhHHHHH
Confidence 888765544
No 44
>PF02839 CBM_5_12: Carbohydrate binding domain; InterPro: IPR003610 A carbohydrate-binding module (CBM) is defined as a contiguous amino acid sequence within a carbohydrate-active enzyme with a discreet fold having carbohydrate-binding activity. A few exceptions are CBMs in cellulosomal scaffolding proteins and rare instances of independent putative CBMs. The requirement of CBMs existing as modules within larger enzymes sets this class of carbohydrate-binding protein apart from other non-catalytic sugar binding proteins such as lectins and sugar transport proteins. CBMs were previously classified as cellulose-binding domains (CBDs) based on the initial discovery of several modules that bound cellulose [, ]. However, additional modules in carbohydrate-active enzymes are continually being found that bind carbohydrates other than cellulose yet otherwise meet the CBM criteria, hence the need to reclassify these polypeptides using more inclusive terminology. Previous classification of cellulose-binding domains were based on amino acid similarity. Groupings of CBDs were called "Types" and numbered with roman numerals (e.g. Type I or Type II CBDs). In keeping with the glycoside hydrolase classification, these groupings are now called families and numbered with Arabic numerals. Families 1 to 13 are the same as Types I to XIII. For a detailed review on the structure and binding modes of CBMs see []. This entry represents CBM5 from CAZY and CBM12 from CAZY. These modules have a core structure consisting of a 3-stranded meander beta-sheet, which contain six aromatic groups that may be important for binding. CBM5/12 is found in proteins such as chitinase A1, chitinase B [], and endoglucanase Z []. The overall topology of the CBM is structurally similar to the C-terminal chitin-binding domains (ChBD) of chitinase A1 and chitinase B, however the binding mechanism for the ChBD may be different from that of the CBM [].; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0030246 carbohydrate binding, 0005975 carbohydrate metabolic process, 0005576 extracellular region; PDB: 1ED7_A 1W1V_A 1E15_B 1UR8_A 1E6Z_B 1E6P_A 1W1T_A 1W1P_B 1UR9_A 1E6R_A ....
Probab=68.76 E-value=3 Score=26.23 Aligned_cols=19 Identities=32% Similarity=0.903 Sum_probs=11.5
Q ss_pred ccccccCeeeeeCCEEEEE
Q 026789 43 YSNWAANQTFTVGDTLVFN 61 (233)
Q Consensus 43 Y~~Wa~~~~f~vGD~L~F~ 61 (233)
|..|..++....||+|.|+
T Consensus 1 ~p~W~~~~~Y~~Gd~V~~~ 19 (41)
T PF02839_consen 1 YPAWDPGTTYNAGDRVSYN 19 (41)
T ss_dssp --B--TTCEE-TT-EEEET
T ss_pred CCCcCCCCEEcCCCEEEEC
Confidence 5679999999999999873
No 45
>TIGR02228 sigpep_I_arch signal peptidase I, archaeal type. This model represents signal peptidase I from most archaea, a subunit of the eukaryotic endoplasmic reticulum signal peptidase I complex, and an apparent signal peptidase I from a small number of bacteria. It is related to but does not overlap in hits with TIGR02227, the bacterial and mitochondrial signal peptidase I.
Probab=68.31 E-value=15 Score=30.41 Aligned_cols=25 Identities=20% Similarity=0.401 Sum_probs=19.0
Q ss_pred CeeeeeCCEEEEEecCC----CceEEEEc
Q 026789 49 NQTFTVGDTLVFNFAAG----NHDVTRVT 73 (233)
Q Consensus 49 ~~~f~vGD~L~F~y~~~----~H~V~~V~ 73 (233)
...++.||.++|+...+ -|.|+.+.
T Consensus 58 ~~~~~~GDIVvf~~~~~~~~iihRVi~v~ 86 (158)
T TIGR02228 58 PNDIQVGDVITYKSPGFNTPVTHRVIEIN 86 (158)
T ss_pred cCCCCCCCEEEEEECCCCccEEEEEEEEE
Confidence 45789999999998653 37777764
No 46
>PF12961 DUF3850: Domain of Unknown Function with PDB structure (DUF3850)
Probab=65.94 E-value=4.5 Score=29.41 Aligned_cols=18 Identities=39% Similarity=0.822 Sum_probs=13.5
Q ss_pred cCeeeeeCCEEEE-EecCC
Q 026789 48 ANQTFTVGDTLVF-NFAAG 65 (233)
Q Consensus 48 ~~~~f~vGD~L~F-~y~~~ 65 (233)
+...|+|||.|++ .|..+
T Consensus 25 NDRdf~VGD~L~L~E~~~~ 43 (72)
T PF12961_consen 25 NDRDFQVGDILVLREWDNG 43 (72)
T ss_pred cCCCCCCCCEEEEEEecCC
Confidence 4578999999988 45443
No 47
>PRK13791 lysozyme inhibitor; Provisional
Probab=65.94 E-value=46 Score=26.17 Aligned_cols=23 Identities=4% Similarity=0.073 Sum_probs=14.0
Q ss_pred EEEEEecCCCceEEEE---cCCCCCc
Q 026789 57 TLVFNFAAGNHDVTRV---TQSSFNA 79 (233)
Q Consensus 57 ~L~F~y~~~~H~V~~V---~~~~y~~ 79 (233)
..+|.|....+...+| |.+.|..
T Consensus 55 ~A~l~~~g~~i~l~~v~SaSGarY~~ 80 (113)
T PRK13791 55 YAIISQVDEMIPMRLMKMASGANYEA 80 (113)
T ss_pred EEEEEECCeEEEEEEEeecCcceeec
Confidence 5788887655555555 4445544
No 48
>PLN02191 L-ascorbate oxidase
Probab=63.99 E-value=15 Score=36.57 Aligned_cols=78 Identities=14% Similarity=0.199 Sum_probs=47.6
Q ss_pred CeeeeeCCEEEEEecCCC---------ceEEEEcCCCCCcC-C-CCCCCCcCCCCCceEEeccCCCeeEecCCCCCCCCC
Q 026789 49 NQTFTVGDTLVFNFAAGN---------HDVTRVTQSSFNAC-N-TTSPLSRTTNSPASVTLTASGPHYFICSFPGHCLGG 117 (233)
Q Consensus 49 ~~~f~vGD~L~F~y~~~~---------H~V~~V~~~~y~~C-~-~~~~~~~~~~G~~~v~l~~~G~~yFic~~~~hC~~G 117 (233)
.++++.||.|+.+..+.. |.+.+....-+|.= . ..-+|.-..+-..+|+++..|++||-|-...|-..|
T Consensus 55 ~i~~~~Gd~v~v~v~N~l~~~~tsiHwHGl~~~~~~~~DGv~gvtq~pI~PG~s~~Y~f~~~~~GT~wYHsH~~~q~~~G 134 (574)
T PLN02191 55 TIDAVAGDTIVVHLTNKLTTEGLVIHWHGIRQKGSPWADGAAGVTQCAINPGETFTYKFTVEKPGTHFYHGHYGMQRSAG 134 (574)
T ss_pred eEEEEcCCEEEEEEEECCCCCCccEECCCCCCCCCccccCCCccccCCcCCCCeEEEEEECCCCeEEEEeeCcHHHHhCC
Confidence 578999999999886531 22222111001110 0 000121111123577888999999999998888999
Q ss_pred CeeeEEecC
Q 026789 118 QKLAINVSA 126 (233)
Q Consensus 118 mk~~I~V~~ 126 (233)
|...|.|..
T Consensus 135 l~G~liV~~ 143 (574)
T PLN02191 135 LYGSLIVDV 143 (574)
T ss_pred CEEEEEEcc
Confidence 999999964
No 49
>cd06555 ASCH_PF0470_like ASC-1 homology domain, subfamily similar to Pyrococcus furiosus Pf0470. The ASCH domain, a small beta-barrel domain found in all three kingdoms of life, resembles the RNA-binding PUA domain and may also interact with RNA. ASCH has been proposed to function as an RNA-binding domain during coactivation, RNA-processing and the regulation of prokaryotic translation.
Probab=63.71 E-value=7 Score=30.57 Aligned_cols=30 Identities=27% Similarity=0.541 Sum_probs=17.9
Q ss_pred eeeeeCCEEEEEe-cCCCceEEEE-cCCCCCc
Q 026789 50 QTFTVGDTLVFNF-AAGNHDVTRV-TQSSFNA 79 (233)
Q Consensus 50 ~~f~vGD~L~F~y-~~~~H~V~~V-~~~~y~~ 79 (233)
+.|++||.|+|+- ..+.--+++| .-..|++
T Consensus 30 ~~ikvGD~I~f~~~~~~~~l~v~V~~i~~Y~s 61 (109)
T cd06555 30 QQIKVGDKILFNDLDTGQQLLVKVVDIRKYDS 61 (109)
T ss_pred hcCCCCCEEEEEEcCCCcEEEEEEEEEEecCC
Confidence 5799999999954 3333333444 3334544
No 50
>TIGR03389 laccase laccase, plant. Members of this protein family include the copper-containing enzyme laccase (EC 1.10.3.2), often several from a single plant species, and additional, uncharacterized, closely related plant proteins termed laccase-like multicopper oxidases. This protein family shows considerable sequence similarity to the L-ascorbate oxidase (EC 1.10.3.3) family. Laccases are enzymes of rather broad specificity, and classification of all proteins scoring about the trusted cutoff of this model as laccases may be appropriate.
Probab=63.51 E-value=21 Score=35.00 Aligned_cols=79 Identities=15% Similarity=0.147 Sum_probs=45.4
Q ss_pred CeeeeeCCEEEEEecCCC--------ceEEEEcCCCCCc--CCCCCCCCcCCCCCceEEe-ccCCCeeEecCCCCCCCCC
Q 026789 49 NQTFTVGDTLVFNFAAGN--------HDVTRVTQSSFNA--CNTTSPLSRTTNSPASVTL-TASGPHYFICSFPGHCLGG 117 (233)
Q Consensus 49 ~~~f~vGD~L~F~y~~~~--------H~V~~V~~~~y~~--C~~~~~~~~~~~G~~~v~l-~~~G~~yFic~~~~hC~~G 117 (233)
.+.++.||+|+.++.+.. |.+.|......|. ....-+|.-..+-..+|++ +..|++||-|-... ...|
T Consensus 35 ~i~~~~GD~v~v~v~N~l~~~tsiHwHGl~q~~~~~~DGv~~vTq~pI~PG~s~~Y~f~~~~~~GT~WYHsH~~~-~~~G 113 (539)
T TIGR03389 35 TLYAREGDTVIVNVTNNVQYNVTIHWHGVRQLRNGWADGPAYITQCPIQPGQSYVYNFTITGQRGTLWWHAHISW-LRAT 113 (539)
T ss_pred EEEEEcCCEEEEEEEeCCCCCeeEecCCCCCCCCCCCCCCcccccCCcCCCCeEEEEEEecCCCeeEEEecCchh-hhcc
Confidence 578999999999886531 3333221100111 0001112111112356777 48899999998754 4468
Q ss_pred CeeeEEecCCC
Q 026789 118 QKLAINVSARG 128 (233)
Q Consensus 118 mk~~I~V~~~~ 128 (233)
|...|.|....
T Consensus 114 l~G~lIV~~~~ 124 (539)
T TIGR03389 114 VYGAIVILPKP 124 (539)
T ss_pred ceEEEEEcCCC
Confidence 99999887644
No 51
>PLN03148 Blue copper-like protein; Provisional
Probab=62.66 E-value=4.4 Score=34.09 Aligned_cols=18 Identities=28% Similarity=0.674 Sum_probs=14.9
Q ss_pred CCCCceeeecCCCCccCC
Q 026789 192 TRQPATHVVGGALGWTVP 209 (233)
Q Consensus 192 t~a~~~~~VG~~~GW~~~ 209 (233)
...+++|+|||+.||+..
T Consensus 17 ~~~a~~~~VGd~~GW~~~ 34 (167)
T PLN03148 17 ATTATDHIVGANKGWNPG 34 (167)
T ss_pred hccceEEEeCCCCCcCCC
Confidence 456889999999999754
No 52
>PF02402 Lysis_col: Lysis protein; InterPro: IPR003059 The DNA sequence of the entire colicin E2 operon has been determined []. The operon comprises the colicin activity gene (ceaB), the colicin immunity gene (ceiB) and the lysis gene (celB), which is essential for colicin release from producing cells []. A putative LexA binding site is located upstream from ceaB, and a rho-independent terminator structure is located downstream from celB []. Comparison of the amino acid sequences of colicin E2 and cloacin DF13 reveal extensive similarity. These colicins have different modes of action and recognise different cell surface receptors; the two major regions of heterology at the C terminus, and in the C-terminal end of the central region are thought to correspond to the catalytic and receptor-recognition domains, respectively []. Sequence similarities between colicins E2, A and E1 [] are less striking. The colicin E2 (pyocin) immunity protein does not share similarity with either the colicin E3 or cloacin DF13 [] immunity proteins. By contrast, the lysis proteins of the ColE2, ColE1 and CloDF13 plasmids are almost identical except in the N-terminal regions, which themselves are similar to lipoprotein signal peptides []. Processing of the ColE2 prolysis protein to the mature form is prevented by globomycin, a specific inhibitor of the lipoprotein signal peptidase []. The mature ColE2 lysis protein is located in the cell envelope [].; GO: 0009405 pathogenesis, 0019835 cytolysis, 0019867 outer membrane
Probab=60.95 E-value=3.5 Score=27.14 Aligned_cols=22 Identities=18% Similarity=0.339 Sum_probs=12.1
Q ss_pred ChhHHHHHHHHHHHHhhhcccc
Q 026789 1 MFNRFFLAAIAIAALVQSSTAQ 22 (233)
Q Consensus 1 m~~~~~~~~~~~~~l~~~~~a~ 22 (233)
|.|.++++.+++++|+..|.+.
T Consensus 1 MkKi~~~~i~~~~~~L~aCQaN 22 (46)
T PF02402_consen 1 MKKIIFIGIFLLTMLLAACQAN 22 (46)
T ss_pred CcEEEEeHHHHHHHHHHHhhhc
Confidence 6655555555555555555544
No 53
>PF07174 FAP: Fibronectin-attachment protein (FAP); InterPro: IPR010801 This family contains bacterial fibronectin-attachment proteins (FAP). Family members are rich in alanine and proline, are approximately 300 long, and seem to be restricted to mycobacteria. These proteins contain a fibronectin-binding motif that allows mycobacteria to bind to fibronectin in the extracellular matrix [].; GO: 0050840 extracellular matrix binding, 0005576 extracellular region
Probab=60.89 E-value=69 Score=29.17 Aligned_cols=16 Identities=19% Similarity=0.501 Sum_probs=8.1
Q ss_pred hcccc--CCcccCCceec
Q 026789 217 QNWAR--NNNFSVGDILG 232 (233)
Q Consensus 217 ~~Wa~--~~~F~vGD~L~ 232 (233)
.-|.+ ..++.-|-.|+
T Consensus 125 ~GW~~Sda~~L~yG~all 142 (297)
T PF07174_consen 125 AGWVESDASHLDYGSALL 142 (297)
T ss_pred CCccccccceeecceeee
Confidence 35653 35555565553
No 54
>PRK11372 lysozyme inhibitor; Provisional
Probab=59.24 E-value=64 Score=25.07 Aligned_cols=24 Identities=4% Similarity=0.162 Sum_probs=15.3
Q ss_pred CCEEEEEecCCCceEEEE---cCCCCC
Q 026789 55 GDTLVFNFAAGNHDVTRV---TQSSFN 78 (233)
Q Consensus 55 GD~L~F~y~~~~H~V~~V---~~~~y~ 78 (233)
+|.+.|.|....+...++ |.+.|.
T Consensus 50 ~~~v~l~~~~~~~~L~~~~SASGArY~ 76 (109)
T PRK11372 50 RQEVSFVYDNQLLHLKQGISASGARYT 76 (109)
T ss_pred CCeEEEEECCEEEEEEEeeccCcCcEe
Confidence 788888886545555555 444554
No 55
>PLN02991 oxidoreductase
Probab=56.49 E-value=38 Score=33.55 Aligned_cols=80 Identities=21% Similarity=0.234 Sum_probs=47.9
Q ss_pred CeeeeeCCEEEEEecCCC--------ceEEEEcCCCCCcCC-CCCCCCcCCCCCceEEe-ccCCCeeEecCCCCCCCCCC
Q 026789 49 NQTFTVGDTLVFNFAAGN--------HDVTRVTQSSFNACN-TTSPLSRTTNSPASVTL-TASGPHYFICSFPGHCLGGQ 118 (233)
Q Consensus 49 ~~~f~vGD~L~F~y~~~~--------H~V~~V~~~~y~~C~-~~~~~~~~~~G~~~v~l-~~~G~~yFic~~~~hC~~Gm 118 (233)
.++++.||.|+.+..+.. |.+.|......|.=- ..-+|.-..+=..+|++ +..|++||-+-...+-..|+
T Consensus 60 ~I~~~~GD~v~V~V~N~L~~~ttiHWHGi~q~~~~~~DGv~~tQcpI~PG~sftY~F~~~~q~GT~WYHsH~~~q~~~Gl 139 (543)
T PLN02991 60 DIISVTNDNLIINVFNHLDEPFLISWSGIRNWRNSYQDGVYGTTCPIPPGKNYTYALQVKDQIGSFYYFPSLGFHKAAGG 139 (543)
T ss_pred cEEEECCCEEEEEecCCCCCCccEEECCcccCCCccccCCCCCCCccCCCCcEEEEEEeCCCCcceEEecCcchhhhCCC
Confidence 578899999999887641 444442111112100 01122222222357777 47999999887776666788
Q ss_pred eeeEEecCCC
Q 026789 119 KLAINVSARG 128 (233)
Q Consensus 119 k~~I~V~~~~ 128 (233)
...|.|....
T Consensus 140 ~G~lIV~~~~ 149 (543)
T PLN02991 140 FGAIRISSRP 149 (543)
T ss_pred eeeEEEeCCc
Confidence 8888887543
No 56
>PRK13861 type IV secretion system protein VirB9; Provisional
Probab=55.46 E-value=27 Score=31.85 Aligned_cols=23 Identities=13% Similarity=0.177 Sum_probs=12.4
Q ss_pred eeeeeCCEEEEEecCCCceEEEE
Q 026789 50 QTFTVGDTLVFNFAAGNHDVTRV 72 (233)
Q Consensus 50 ~~f~vGD~L~F~y~~~~H~V~~V 72 (233)
..+..+|+....-..|.++.++.
T Consensus 37 v~Y~p~~V~~V~~~~G~~T~I~f 59 (292)
T PRK13861 37 LAYNPDQVVRLSTAVGATLVVTF 59 (292)
T ss_pred EEeCCCCEEEEEEECCcEEEEEE
Confidence 34455555555555555555554
No 57
>PRK11627 hypothetical protein; Provisional
Probab=53.60 E-value=15 Score=31.47 Aligned_cols=21 Identities=19% Similarity=0.418 Sum_probs=13.9
Q ss_pred ChhHHHHHHHHHHHHhhhccc
Q 026789 1 MFNRFFLAAIAIAALVQSSTA 21 (233)
Q Consensus 1 m~~~~~~~~~~~~~l~~~~~a 21 (233)
|.||++|.++++++|..|+..
T Consensus 1 mlkklll~l~a~~~L~gCA~~ 21 (192)
T PRK11627 1 MLKKILFPLVALFMLAGCATP 21 (192)
T ss_pred ChHHHHHHHHHHHHHHhhcCC
Confidence 899999876655555544433
No 58
>PRK12407 flgH flagellar basal body L-ring protein; Reviewed
Probab=53.23 E-value=22 Score=31.21 Aligned_cols=18 Identities=22% Similarity=0.431 Sum_probs=13.3
Q ss_pred cccCeeeeeCCEEEEEec
Q 026789 46 WAANQTFTVGDTLVFNFA 63 (233)
Q Consensus 46 Wa~~~~f~vGD~L~F~y~ 63 (233)
..+.+-.+|||+|...-.
T Consensus 59 f~D~rA~~VGDiiTV~i~ 76 (221)
T PRK12407 59 LQDRRAYRVGDILTVILD 76 (221)
T ss_pred cccccccCCCCEEEEEEE
Confidence 345677899999987653
No 59
>PRK12696 flgH flagellar basal body L-ring protein; Reviewed
Probab=46.16 E-value=31 Score=30.54 Aligned_cols=17 Identities=24% Similarity=0.421 Sum_probs=12.8
Q ss_pred ccCeeeeeCCEEEEEec
Q 026789 47 AANQTFTVGDTLVFNFA 63 (233)
Q Consensus 47 a~~~~f~vGD~L~F~y~ 63 (233)
++.+-.+|||+|.....
T Consensus 61 ~D~RA~~VGDivTV~i~ 77 (236)
T PRK12696 61 ADSRARRVGDIVLVKIV 77 (236)
T ss_pred cccccccCCCEEEEEEE
Confidence 45677899999977553
No 60
>TIGR02227 sigpep_I_bact signal peptidase I, bacterial type. A related model finds a simlar protein in many archaea and a few bacteria, as well as a microsomal (endoplasmic reticulum) protein in eukaryotes.
Probab=43.72 E-value=65 Score=26.30 Aligned_cols=14 Identities=29% Similarity=0.335 Sum_probs=9.9
Q ss_pred eeeeeCCEEEEEec
Q 026789 50 QTFTVGDTLVFNFA 63 (233)
Q Consensus 50 ~~f~vGD~L~F~y~ 63 (233)
..++.||.++|+..
T Consensus 50 ~~~~rGDiVvf~~~ 63 (163)
T TIGR02227 50 SDPKRGDIVVFKDP 63 (163)
T ss_pred CCCCCCcEEEEecC
Confidence 45677888888764
No 61
>PF05382 Amidase_5: Bacteriophage peptidoglycan hydrolase ; InterPro: IPR008044 This entry is represented by Bacteriophage SFi21, lysin (Cell wall hydrolase; 3.5.1.28 from EC). At least one of proteins in this entry, the Pal protein from the pneumococcal bacteriophage Dp-1 (O03979 from SWISSPROT) has been shown to be an N-acetylmuramoyl-L-alanine amidase []. According to the known modular structure of this and other peptidoglycan hydrolases from the pneumococcal system, the active site should reside within this domain while a C-terminal domain binds to the choline residues of the cell wall teichoic acids [, ].
Probab=43.33 E-value=57 Score=26.75 Aligned_cols=34 Identities=21% Similarity=0.355 Sum_probs=26.7
Q ss_pred eeeeeCCEEEEEec-----CCCceEEEEcCCCCCcCCCC
Q 026789 50 QTFTVGDTLVFNFA-----AGNHDVTRVTQSSFNACNTT 83 (233)
Q Consensus 50 ~~f~vGD~L~F~y~-----~~~H~V~~V~~~~y~~C~~~ 83 (233)
...+-||++++.-. ...|+.+.++...+-.|+..
T Consensus 74 ~~~q~GDI~I~g~~g~S~G~~GHtgif~~~~~iIhc~y~ 112 (145)
T PF05382_consen 74 WNLQRGDIFIWGRRGNSAGAGGHTGIFMDNDTIIHCNYG 112 (145)
T ss_pred ccccCCCEEEEcCCCCCCCCCCeEEEEeCCCcEEEecCC
Confidence 46899999998554 23599999988778889863
No 62
>PF15240 Pro-rich: Proline-rich
Probab=42.89 E-value=12 Score=31.74 Aligned_cols=16 Identities=38% Similarity=0.366 Sum_probs=8.2
Q ss_pred HHHHHHHHHhhhcccc
Q 026789 7 LAAIAIAALVQSSTAQ 22 (233)
Q Consensus 7 ~~~~~~~~l~~~~~a~ 22 (233)
||||+.++||+.|+|.
T Consensus 2 LlVLLSvALLALSSAQ 17 (179)
T PF15240_consen 2 LLVLLSVALLALSSAQ 17 (179)
T ss_pred hhHHHHHHHHHhhhcc
Confidence 4444545555555554
No 63
>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626. This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.
Probab=41.89 E-value=25 Score=29.84 Aligned_cols=24 Identities=21% Similarity=0.487 Sum_probs=17.3
Q ss_pred CCCCccccccCeeeeeCCEEEEEecC
Q 026789 39 GPATYSNWAANQTFTVGDTLVFNFAA 64 (233)
Q Consensus 39 ~~~~Y~~Wa~~~~f~vGD~L~F~y~~ 64 (233)
+..+|+.|.+. .+. |...+.+|-.
T Consensus 45 ~~~~y~~~~~~-~l~-GKV~lvn~~A 68 (184)
T TIGR01626 45 KDTVYQPWGSA-ELA-GKVRVVHHIA 68 (184)
T ss_pred CcccceeccHH-HcC-CCEEEEEEEe
Confidence 67899999644 444 8887777754
No 64
>PF12195 End_beta_barrel: Beta barrel domain of bacteriophage endosialidase; InterPro: IPR024427 This entry represents the beta barrel domain of endosialidases which is nested in a beta propeller domain. This beta barrel domain is approximately 80 amino acids in length and represents one of the two sialic acid binding sites of the enzyme [].; PDB: 1V0E_B 1V0F_E 3JU4_A 3GVL_A 3GVK_B 3GVJ_A.
Probab=41.82 E-value=14 Score=27.20 Aligned_cols=49 Identities=24% Similarity=0.436 Sum_probs=22.3
Q ss_pred CeeeeeCCEEEEEecC-----CCceEEEE-cCCCCCcCCCCCCCCcCCCCCceEEeccCCCeeE
Q 026789 49 NQTFTVGDTLVFNFAA-----GNHDVTRV-TQSSFNACNTTSPLSRTTNSPASVTLTASGPHYF 106 (233)
Q Consensus 49 ~~~f~vGD~L~F~y~~-----~~H~V~~V-~~~~y~~C~~~~~~~~~~~G~~~v~l~~~G~~yF 106 (233)
..-+.+||.|.|.-.. |.-+|..| ++..|.--+ +....++++..|.+|-
T Consensus 25 ~HGl~vGD~VnFsnsa~tGvSG~mTVatVid~ntFTVt~---------~~~q~~t~NnaG~~w~ 79 (83)
T PF12195_consen 25 DHGLFVGDFVNFSNSAVTGVSGNMTVATVIDANTFTVTT---------SNSQTSTFNNAGVNWN 79 (83)
T ss_dssp T----TT-EEEEES-SSTT--EEEEEEEEEETTEEEEE----------S---SS-EE-TT-EEE
T ss_pred cCceeecceEEEeccccccccccEEEEEEecCCcEEEec---------CCcccccccccceeee
Confidence 3457899999998764 35666666 554433211 1224556667777774
No 65
>PF10913 DUF2706: Protein of unknown function (DUF2706); InterPro: IPR024444 This family of proteins with unknown function appears to be restricted to Rickettsia spp.
Probab=41.65 E-value=27 Score=23.92 Aligned_cols=19 Identities=32% Similarity=0.660 Sum_probs=11.5
Q ss_pred Chh--HHHHHHHHHHHHhhhc
Q 026789 1 MFN--RFFLAAIAIAALVQSS 19 (233)
Q Consensus 1 m~~--~~~~~~~~~~~l~~~~ 19 (233)
|.| ||+++.||++-|+.+.
T Consensus 1 mlk~lkf~lv~imlaqllsct 21 (60)
T PF10913_consen 1 MLKSLKFLLVLIMLAQLLSCT 21 (60)
T ss_pred ChhHHHHHHHHHHHHHHHcCC
Confidence 677 5555566666666543
No 66
>PF09451 ATG27: Autophagy-related protein 27; InterPro: IPR018939 Autophagy is a degradative transport pathway that delivers cytosolic proteins to the lysosome (vacuole) [] and is induced by starvation []. Cytosolic proteins appear inside the vacuole enclosed in autophagic vesicles. Autophagy significantly differs from other transport pathways by using double membrane layered transport intermediates, called autophagosomes [, ]. The breakdown of vesicular transport intermediates is a unique feature of autophagy []. Autophagy can also function in the elimination of invading bacteria and antigens []. There are more than 25 AuTophaGy-related (ATG) genes that are essential for autophagy, although it is still not known how the autophagosome is made. Atg9 is a potential membrane carrier to deliver lipids that are used to form the vesicle. Atg27 is another transmembrane protein, and is a cycling protein []. It acts as an effector of VPS34 phosphatidylinositol 3-phosphate kinase signalling and regulates the cytoplasm to vacuole transport (Cvt) vesicle formation. It is also required for autophagy-dependent cycling of ATG9.
Probab=40.41 E-value=25 Score=31.33 Aligned_cols=24 Identities=17% Similarity=0.250 Sum_probs=17.1
Q ss_pred cceEEEecCCCCCccCCCCCCCcccccc
Q 026789 21 AQTRHVVGDALGWIVPPNGPATYSNWAA 48 (233)
Q Consensus 21 a~~~~~VGg~~GW~~~~~~~~~Y~~Wa~ 48 (233)
+-..|..++..||.+-+ +++.|.+
T Consensus 222 ~~~n~~~~g~~g~e~iP----~~dfw~~ 245 (268)
T PF09451_consen 222 SWYNYNRYGARGFELIP----HFDFWRS 245 (268)
T ss_pred hheeeccCCCCCceecc----cHhHHHh
Confidence 34567789999999865 4567753
No 67
>PRK12701 flgH flagellar basal body L-ring protein; Reviewed
Probab=39.79 E-value=49 Score=29.18 Aligned_cols=18 Identities=17% Similarity=0.274 Sum_probs=13.1
Q ss_pred cccCeeeeeCCEEEEEec
Q 026789 46 WAANQTFTVGDTLVFNFA 63 (233)
Q Consensus 46 Wa~~~~f~vGD~L~F~y~ 63 (233)
.++.+-.+|||+|.....
T Consensus 63 f~D~rA~~VGDiiTV~i~ 80 (230)
T PRK12701 63 FETPRARHPGDILTVYLI 80 (230)
T ss_pred ccccccccCCCEEEEEEE
Confidence 344667899999977653
No 68
>PF03823 Neurokinin_B: Neurokinin B; InterPro: IPR003635 Tachykinins [, , ] are a group of biologically active peptides which excite neurons, evoke behavioral responses, are potent vasodilatators and contract (directly or indirectly) many smooth muscles. This family includes neurokinins, as well as many other peptides. Like other tachykinins, neurokinins are synthesized as larger protein precursors that are enzymatically converted to their mature forms.; GO: 0007217 tachykinin receptor signaling pathway
Probab=39.47 E-value=28 Score=24.14 Aligned_cols=16 Identities=31% Similarity=0.389 Sum_probs=11.2
Q ss_pred ChhHHHHHHHHHHHHh
Q 026789 1 MFNRFFLAAIAIAALV 16 (233)
Q Consensus 1 m~~~~~~~~~~~~~l~ 16 (233)
|.+.++|++|++.++.
T Consensus 1 MR~~lLf~aiLalsla 16 (59)
T PF03823_consen 1 MRSTLLFAAILALSLA 16 (59)
T ss_pred ChhHHHHHHHHHHHHH
Confidence 7778888777755543
No 69
>PRK12750 cpxP periplasmic repressor CpxP; Reviewed
Probab=39.11 E-value=23 Score=29.72 Aligned_cols=19 Identities=16% Similarity=0.389 Sum_probs=14.0
Q ss_pred ChhHHHHHHHHHHHHhhhc
Q 026789 1 MFNRFFLAAIAIAALVQSS 19 (233)
Q Consensus 1 m~~~~~~~~~~~~~l~~~~ 19 (233)
|+||++++++++++++.++
T Consensus 3 ~~kkl~~~~v~~~l~lg~~ 21 (170)
T PRK12750 3 LAKKLVLAAVVLPLTLGTA 21 (170)
T ss_pred hHHHHHHHHHHHHHHHHhh
Confidence 7899988877776666443
No 70
>PRK09810 entericidin A; Provisional
Probab=38.45 E-value=34 Score=22.18 Aligned_cols=10 Identities=20% Similarity=0.597 Sum_probs=4.9
Q ss_pred ChhHHHHHHH
Q 026789 1 MFNRFFLAAI 10 (233)
Q Consensus 1 m~~~~~~~~~ 10 (233)
|.||++++++
T Consensus 1 mMkk~~~l~~ 10 (41)
T PRK09810 1 MMKRLIVLVL 10 (41)
T ss_pred ChHHHHHHHH
Confidence 5555544433
No 71
>PRK11528 hypothetical protein; Provisional
Probab=38.18 E-value=36 Score=30.42 Aligned_cols=37 Identities=16% Similarity=0.170 Sum_probs=22.7
Q ss_pred CCCccCCCCCCCccccccCeeeeeC--------CEEEEEecCCCceEEE
Q 026789 31 LGWIVPPNGPATYSNWAANQTFTVG--------DTLVFNFAAGNHDVTR 71 (233)
Q Consensus 31 ~GW~~~~~~~~~Y~~Wa~~~~f~vG--------D~L~F~y~~~~H~V~~ 71 (233)
.+|.- -+.+|-.|.+..+.+-+ +.|+|++.. .++..+
T Consensus 26 ~~w~d---is~~yl~W~~~~e~~~~~~~~~~d~~ylelE~g~-~~~wGD 70 (254)
T PRK11528 26 GGFAN---ISLNYLDWTSRTTEKSSDKSHKDDFGYLELEGGA-GFSWGE 70 (254)
T ss_pred ccccc---eeehhhhhhccccccccccCCcCCCcEEEEEccc-cCCeEe
Confidence 46764 25788889887665432 267777754 455544
No 72
>TIGR01433 CyoA cytochrome o ubiquinol oxidase subunit II. This enzyme catalyzes the oxidation of ubiquinol with the concomitant reduction of molecular oxygen to water. This acts as the terminal electron acceptor in the respiratory chain. Subunit II is responsible for binding and oxidation of the ubiquinone substrate. This sequence is closely related to QoxA, which oxidizes quinol in gram positive bacteria but which is in complex with subunits which utilize cytochromes a in the reduction of molecular oxygen. Slightly more distantly related is subunit II of cytochrome c oxidase which uses cyt. c as the oxidant.
Probab=37.66 E-value=1.8e+02 Score=25.35 Aligned_cols=31 Identities=13% Similarity=-0.001 Sum_probs=24.7
Q ss_pred ceEEeccCCCeeEecCCCCCCCCC---CeeeEEecC
Q 026789 94 ASVTLTASGPHYFICSFPGHCLGG---QKLAINVSA 126 (233)
Q Consensus 94 ~~v~l~~~G~~yFic~~~~hC~~G---mk~~I~V~~ 126 (233)
..++.+++|.|+-.|+ ..|..| |.+.|.|.+
T Consensus 181 ~~~~~~~~G~y~g~Ca--E~CG~~Ha~M~~~V~v~~ 214 (226)
T TIGR01433 181 LHLIANEPGVYDGISA--NYSGPGFSGMKFKAIATD 214 (226)
T ss_pred EEEEeCCCEEEEEEch--hhcCcCccCCeEEEEEEC
Confidence 3567789999999999 678775 888887754
No 73
>PF02362 B3: B3 DNA binding domain; InterPro: IPR003340 Two DNA binding proteins, RAV1 and RAV2 from Arabidopsis thaliana contain two distinct amino acid sequence domains found only in higher plant species. The N-terminal regions of RAV1 and RAV2 are homologous to the AP2 DNA-binding domain (see IPR001471 from INTERPRO) present in a family of transcription factors, while the C-terminal region exhibits homology to the highly conserved C-terminal domain, designated B3, of VP1/ABI3 transcription factors []. The AP2 and B3-like domains of RAV1 bind autonomously to the CAACA and CACCTG motifs, respectively, and together achieve a high affinity and specificity of binding. It has been suggested that the AP2 and B3-like domains of RAV1 are connected by a highly flexible structure enabling the two domains to bind to the CAACA and CACCTG motifs in various spacings and orientations [].; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent; PDB: 1WID_A 1YEL_A.
Probab=37.18 E-value=24 Score=25.71 Aligned_cols=20 Identities=20% Similarity=0.446 Sum_probs=11.7
Q ss_pred cCeeeeeCCEEEEEecCCCc
Q 026789 48 ANQTFTVGDTLVFNFAAGNH 67 (233)
Q Consensus 48 ~~~~f~vGD~L~F~y~~~~H 67 (233)
....+++||.++|.+.....
T Consensus 70 ~~n~L~~GD~~~F~~~~~~~ 89 (100)
T PF02362_consen 70 RDNGLKEGDVCVFELIGNSN 89 (100)
T ss_dssp HHCT--TT-EEEEEE-SSSC
T ss_pred HHcCCCCCCEEEEEEecCCC
Confidence 35678899999999975333
No 74
>PLN00115 pollen allergen group 3; Provisional
Probab=36.55 E-value=49 Score=26.22 Aligned_cols=30 Identities=33% Similarity=0.463 Sum_probs=17.2
Q ss_pred ChhH-HHHHHHHHHHHhhhcccc--eEEEecCC
Q 026789 1 MFNR-FFLAAIAIAALVQSSTAQ--TRHVVGDA 30 (233)
Q Consensus 1 m~~~-~~~~~~~~~~l~~~~~a~--~~~~VGg~ 30 (233)
|.++ ++|++.++++|+..+.+. ..+.|++.
T Consensus 1 ~~~~~~~~~~~~~a~l~~~~~~g~~v~F~V~~g 33 (118)
T PLN00115 1 MSSLSFLLLAVALAALFAVGSCATEVTFKVGKG 33 (118)
T ss_pred CchhHHHHHHHHHHHHhhhhhcCCceEEEECCC
Confidence 5553 456666677777654443 36667654
No 75
>PF10829 DUF2554: Protein of unknown function (DUF2554); InterPro: IPR020117 This entry contains proteins with no known function.
Probab=35.96 E-value=34 Score=24.90 Aligned_cols=20 Identities=30% Similarity=0.381 Sum_probs=14.7
Q ss_pred ChhHHHHHHHHHHHHhhhcc
Q 026789 1 MFNRFFLAAIAIAALVQSST 20 (233)
Q Consensus 1 m~~~~~~~~~~~~~l~~~~~ 20 (233)
|+||-+.+++++.+|+.+-.
T Consensus 1 M~~k~lS~~lL~caLFSGql 20 (76)
T PF10829_consen 1 MFKKGLSALLLICALFSGQL 20 (76)
T ss_pred ChHHHHHHHHHHHHHhcchH
Confidence 89988777777777776533
No 76
>TIGR03431 PhnD phosphonate ABC transporter, periplasmic phosphonate binding protein. Note that this model does not identify all phnD-subfamily genes with evident phosphonate context, but all sequences above the trusted context may be inferred to bind phosphonate compounds even in the absence of such context. Furthermore, there is ample evidence to suggest that many other members of the TIGR01098 subfamily have a different primary function.
Probab=35.86 E-value=37 Score=29.70 Aligned_cols=29 Identities=24% Similarity=0.356 Sum_probs=18.3
Q ss_pred ChhHHHHHHHHHHHHhhhccc--c--eEEEecC
Q 026789 1 MFNRFFLAAIAIAALVQSSTA--Q--TRHVVGD 29 (233)
Q Consensus 1 m~~~~~~~~~~~~~l~~~~~a--~--~~~~VGg 29 (233)
|+|++++.+++.++|..+.++ . .+..||=
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~vg~ 33 (288)
T TIGR03431 1 MLRRLILSLVAAFMLISSNAQAEDWPKELNFGI 33 (288)
T ss_pred ChhhHHHHHHHHHHHHhcchhhhcCCCeEEEEE
Confidence 899998887775555544332 1 3566663
No 77
>PRK10808 outer membrane protein A; Reviewed
Probab=35.86 E-value=31 Score=31.64 Aligned_cols=36 Identities=25% Similarity=0.362 Sum_probs=18.3
Q ss_pred ChhHHHHHHHHHHHHhhhcccce---EEEecCCCCCccC
Q 026789 1 MFNRFFLAAIAIAALVQSSTAQT---RHVVGDALGWIVP 36 (233)
Q Consensus 1 m~~~~~~~~~~~~~l~~~~~a~~---~~~VGg~~GW~~~ 36 (233)
|.|.+++++++++++...+.++. -.-||+..||...
T Consensus 1 Mkk~~~~~~~~~~~~s~~a~a~~~~~g~YvG~~~G~~~~ 39 (351)
T PRK10808 1 MKKTAIAIAVALAGFATVAQAAPKDNTWYTGGKLGWSQY 39 (351)
T ss_pred CcchhhHHHHHHHHHHhhhhhcccCCcEEEeccccceee
Confidence 77755544333333322222221 2459998888753
No 78
>PF04625 DEC-1_N: DEC-1 protein, N-terminal region; InterPro: IPR006719 The defective chorion-1 gene (dec-1) in Drosophila encodes follicle cell proteins necessary for proper eggshell assembly. Multiple products of the dec-1 gene are formed by alternative RNA splicing and proteolytic processing []. Cleavage products include S80 (80 kDa) which is incorporated into the eggshell, and further proteolysis of S80 gives S60 (60 kDa). This domain is present at the N-terminal of these proteins.; GO: 0005213 structural constituent of chorion, 0007304 chorion-containing eggshell formation, 0005576 extracellular region, 0042600 chorion
Probab=35.67 E-value=70 Score=29.88 Aligned_cols=15 Identities=20% Similarity=0.357 Sum_probs=6.7
Q ss_pred ceeeecCCCCccCCC
Q 026789 196 ATHVVGGALGWTVPP 210 (233)
Q Consensus 196 ~~~~VG~~~GW~~~~ 210 (233)
..|.++.-.|=.++.
T Consensus 159 ~nfd~~~lLgq~~p~ 173 (407)
T PF04625_consen 159 SNFDASSLLGQALPQ 173 (407)
T ss_pred cccchhhhhhccCCC
Confidence 345554444434443
No 79
>PF10377 ATG11: Autophagy-related protein 11; InterPro: IPR019460 This family consists of proteins involved in telomere maintenance. In Schizosaccharomyces pombe (fission yeast) this protein is called Taf1 (taz1 interacting factor) and is part of the telomere cap complex. In Saccharomyces cerevisiae (baker's yeast) this protein is called ATG11 and is known to be involved in vacuolar targeting and peroxisome degradation [, ].
Probab=35.63 E-value=26 Score=28.04 Aligned_cols=19 Identities=26% Similarity=0.548 Sum_probs=16.2
Q ss_pred eeeeeCCEEEEEecCCCce
Q 026789 50 QTFTVGDTLVFNFAAGNHD 68 (233)
Q Consensus 50 ~~f~vGD~L~F~y~~~~H~ 68 (233)
.+|++||.+.|-++...|+
T Consensus 41 ~~f~~GDlvLflpt~~~~~ 59 (129)
T PF10377_consen 41 RNFQVGDLVLFLPTRNHNN 59 (129)
T ss_pred ecCCCCCEEEEEecCCCCc
Confidence 5799999999999986664
No 80
>PF06462 Hyd_WA: Propeller; InterPro: IPR006624 Tectonins I and II are two dominant proteins in the nuclei and nuclear matrix from plasmodia of Physarum polycephalum (Slime mold) which encode 217 and 353 amino acids, respectively. Tectonin I is homologous to the C-terminal two-thirds of tectonin II. Both proteins contain six tandem repeats that are each 33-37 amino acids in length and define a new consensus sequence. Homologous repeats are found in L-6, a bacterial lipopolysaccharide-binding lectin from horseshoe crab hemocytes. The repetitive sequences of the tectonins and L-6 are reminiscent of the WD repeats of the beta-subunit of G proteins, suggesting that they form beta-propeller domains. The tectonins may be lectins that function as part of a transmembrane signalling complex during phagocytosis [].
Probab=35.44 E-value=70 Score=19.18 Aligned_cols=25 Identities=20% Similarity=0.290 Sum_probs=20.9
Q ss_pred eEEeccCCCeeEecCCCCCCCCCCe
Q 026789 95 SVTLTASGPHYFICSFPGHCLGGQK 119 (233)
Q Consensus 95 ~v~l~~~G~~yFic~~~~hC~~Gmk 119 (233)
..-++..|..||=+++...|-.|+.
T Consensus 3 VWav~~~G~v~~R~Gis~~~P~G~~ 27 (32)
T PF06462_consen 3 VWAVTSDGSVYFRTGISPSNPEGTS 27 (32)
T ss_pred EEEEcCCCCEEEECcCCCCCCCCCC
Confidence 4557788999999999999999864
No 81
>MTH00140 COX2 cytochrome c oxidase subunit II; Provisional
Probab=35.40 E-value=39 Score=29.46 Aligned_cols=30 Identities=20% Similarity=0.319 Sum_probs=24.3
Q ss_pred eEEeccCCCeeEecCCCCCCCCC---CeeeEEecC
Q 026789 95 SVTLTASGPHYFICSFPGHCLGG---QKLAINVSA 126 (233)
Q Consensus 95 ~v~l~~~G~~yFic~~~~hC~~G---mk~~I~V~~ 126 (233)
.++.+++|.|+..|+ .-|..| |++.|.|..
T Consensus 183 ~~~~~~~g~y~~~C~--e~CG~~H~~M~~~v~v~~ 215 (228)
T MTH00140 183 SFEPKRPGVFYGQCS--EICGANHSFMPIVVEAVP 215 (228)
T ss_pred EEEeCCCEEEEEECc--cccCcCcCCCeEEEEEEC
Confidence 456689999999999 578776 888888764
No 82
>PTZ00047 cytochrome c oxidase subunit II; Provisional
Probab=35.37 E-value=41 Score=28.20 Aligned_cols=30 Identities=17% Similarity=0.267 Sum_probs=23.0
Q ss_pred eEEeccCCCeeEecCCCCCCCCC---CeeeEEecC
Q 026789 95 SVTLTASGPHYFICSFPGHCLGG---QKLAINVSA 126 (233)
Q Consensus 95 ~v~l~~~G~~yFic~~~~hC~~G---mk~~I~V~~ 126 (233)
.+..+++|.||..|+ ..|..| |.+.|.|..
T Consensus 116 ~~~~~~~G~y~gqCs--ElCG~gHs~M~~~V~vvs 148 (162)
T PTZ00047 116 NTFILREGVFYGQCS--EMCGTLHGFMPIVVEAVS 148 (162)
T ss_pred EEecCCCeEEEEEcc--hhcCcCccCceEEEEEeC
Confidence 355688999999999 567654 888887754
No 83
>PLN02983 biotin carboxyl carrier protein of acetyl-CoA carboxylase
Probab=35.34 E-value=2.9e+02 Score=25.17 Aligned_cols=11 Identities=9% Similarity=0.377 Sum_probs=6.5
Q ss_pred CCcccCCceec
Q 026789 222 NNNFSVGDILG 232 (233)
Q Consensus 222 ~~~F~vGD~L~ 232 (233)
+.+++.||.|.
T Consensus 223 GDsVkkGQvLa 233 (274)
T PLN02983 223 GDKVQKGQVVC 233 (274)
T ss_pred CCEecCCCEEE
Confidence 45666666653
No 84
>TIGR01653 lactococcin_972 bacteriocin, lactococcin 972 family. This model represents bacteriocins related to lactococcin 972. Members tend to be found in association with a seven transmembrane putative immunity protein.
Probab=33.90 E-value=58 Score=24.74 Aligned_cols=11 Identities=9% Similarity=0.232 Sum_probs=6.6
Q ss_pred ChhHHHHHHHH
Q 026789 1 MFNRFFLAAIA 11 (233)
Q Consensus 1 m~~~~~~~~~~ 11 (233)
|.||++.++++
T Consensus 1 mkkk~~~~~~~ 11 (92)
T TIGR01653 1 MKKKVVASLVS 11 (92)
T ss_pred CchhhHHHHHH
Confidence 88888444333
No 85
>PRK04517 hypothetical protein; Provisional
Probab=33.41 E-value=1.5e+02 Score=25.71 Aligned_cols=13 Identities=31% Similarity=0.281 Sum_probs=5.7
Q ss_pred hcccceEEEecCC
Q 026789 18 SSTAQTRHVVGDA 30 (233)
Q Consensus 18 ~~~a~~~~~VGg~ 30 (233)
.+.|+++..+.++
T Consensus 18 ~a~A~vtL~~p~~ 30 (216)
T PRK04517 18 SASADVTMEVPDD 30 (216)
T ss_pred hhhheEEEeCCCc
Confidence 3444444444443
No 86
>PF07731 Cu-oxidase_2: Multicopper oxidase; InterPro: IPR011706 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 2 domains.; GO: 0005507 copper ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3GDC_C 3ZX1_A 2YAH_A 2YAR_A 2YAQ_A 2YAO_A 2YAM_A 2YAF_A 2YAP_A 2XU9_A ....
Probab=33.34 E-value=37 Score=26.27 Aligned_cols=32 Identities=22% Similarity=0.328 Sum_probs=26.6
Q ss_pred eEEeccCCCeeEecCCCCCCCCCCeeeEEecC
Q 026789 95 SVTLTASGPHYFICSFPGHCLGGQKLAINVSA 126 (233)
Q Consensus 95 ~v~l~~~G~~yFic~~~~hC~~Gmk~~I~V~~ 126 (233)
++..+.+|.+.|-|-+-.|=..||...+.|..
T Consensus 105 ~~~~~~~G~w~~HCHi~~H~~~GM~~~~~v~~ 136 (138)
T PF07731_consen 105 RFRADNPGPWLFHCHILEHEDNGMMAVFVVGP 136 (138)
T ss_dssp EEEETSTEEEEEEESSHHHHHTT-EEEEEECH
T ss_pred EEEeecceEEEEEEchHHHHhCCCeEEEEEcC
Confidence 45568899999999999999999999998853
No 87
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=33.28 E-value=68 Score=31.86 Aligned_cols=64 Identities=19% Similarity=0.213 Sum_probs=41.1
Q ss_pred ccccCeeeeeCCEEEEEecCCCceEEEEcCCCCCcCCCCCC----C-CcCCCC-CceEEeccCCCeeEec
Q 026789 45 NWAANQTFTVGDTLVFNFAAGNHDVTRVTQSSFNACNTTSP----L-SRTTNS-PASVTLTASGPHYFIC 108 (233)
Q Consensus 45 ~Wa~~~~f~vGD~L~F~y~~~~H~V~~V~~~~y~~C~~~~~----~-~~~~~G-~~~v~l~~~G~~yFic 108 (233)
.=.++++|..-|.++|+|+.....++.+...+.|.-+.+-- + ....+| ..+|.|.+.|+.|=+|
T Consensus 208 ~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~V~L~k~GPVhdv~ 277 (566)
T KOG2315|consen 208 QPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVSVPLLKEGPVHDVT 277 (566)
T ss_pred chhhhccccccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEEEecCCCCCceEEE
Confidence 33468999999999999998878887665555565443311 1 011224 3567777777776443
No 88
>PRK10883 FtsI repressor; Provisional
Probab=33.25 E-value=2.1e+02 Score=27.75 Aligned_cols=76 Identities=9% Similarity=0.111 Sum_probs=43.0
Q ss_pred cCeeeeeCCEEEEEecCCC--------ceEEEEcCCCCCcCCCCCCCCcCCCCCc--eEEec-cCCCeeEecCCCC----
Q 026789 48 ANQTFTVGDTLVFNFAAGN--------HDVTRVTQSSFNACNTTSPLSRTTNSPA--SVTLT-ASGPHYFICSFPG---- 112 (233)
Q Consensus 48 ~~~~f~vGD~L~F~y~~~~--------H~V~~V~~~~y~~C~~~~~~~~~~~G~~--~v~l~-~~G~~yFic~~~~---- 112 (233)
-.+.++.||.|+.++.+.- |.+.+ .....+.. ...+ ...+.. .+.++ ..|+|||-+-..+
T Consensus 77 Ptir~~~Gd~v~v~v~N~L~~~ttiHwHGl~~-~~~~~~g~--~~~I--~PG~~~~y~f~~~~~aGT~WYH~H~~~~t~~ 151 (471)
T PRK10883 77 PTIRVWKGDDVKLIYSNRLTEPVSMTVSGLQV-PGPLMGGP--ARMM--SPNADWAPVLPIRQNAATCWYHANTPNRMAQ 151 (471)
T ss_pred CeEEEECCCEEEEEEEeCCCCCCceeECCccC-CCCCCCCc--cccC--CCCCeEEEEEecCCCceeeEEccCCCCchhh
Confidence 4578899999999987642 33322 11101111 0111 122233 44445 4899999766433
Q ss_pred CCCCCCeeeEEecCCC
Q 026789 113 HCLGGQKLAINVSARG 128 (233)
Q Consensus 113 hC~~Gmk~~I~V~~~~ 128 (233)
+...||...+.|....
T Consensus 152 qv~~GL~G~lII~d~~ 167 (471)
T PRK10883 152 HVYNGLAGMWLVEDEV 167 (471)
T ss_pred hHhcCCeEEEEEeCCc
Confidence 4557998888887643
No 89
>PF12988 DUF3872: Domain of unknown function, B. Theta Gene description (DUF3872); InterPro: IPR024355 This entry represents proteins of unknown function found primarily in Bacteroides species. The Bacteroides thetaiotaomicron gene coding for this protein is located in a conjugate transposon and appears to be upregulated in the presence of host or other bacterial species compared to growth in pure culture [, ].; PDB: 2L3B_A 2L7Q_A.
Probab=32.98 E-value=54 Score=26.74 Aligned_cols=74 Identities=9% Similarity=0.104 Sum_probs=33.0
Q ss_pred ccccccCeeeeeCCEEEEEecCCCceEEEEcCCCCCcCCC-------CC-CCCcCCCC-----CceEEeccCCCeeEecC
Q 026789 43 YSNWAANQTFTVGDTLVFNFAAGNHDVTRVTQSSFNACNT-------TS-PLSRTTNS-----PASVTLTASGPHYFICS 109 (233)
Q Consensus 43 Y~~Wa~~~~f~vGD~L~F~y~~~~H~V~~V~~~~y~~C~~-------~~-~~~~~~~G-----~~~v~l~~~G~~yFic~ 109 (233)
...|.=.+++..|.+++....- +.+..|+.-.. .+ ......+| ++...|.+.-.+.|+-+
T Consensus 35 v~tmPVpk~I~~GeTvEIR~~l-------~reG~y~~t~Y~iRYFQ~dGkG~L~~~~g~~~~pND~Y~L~~~~FRLYYTS 107 (137)
T PF12988_consen 35 VETMPVPKKIKKGETVEIRCEL-------KREGNYADTRYTIRYFQPDGKGTLRMDDGTVLLPNDRYPLEKEVFRLYYTS 107 (137)
T ss_dssp EEE----SS--TTEEEEEEEEE-------EESS--SS---EEEEE-SSS-EEEEETTS-EE-TTSEEE-S-SEEEEEEEE
T ss_pred EEEeccccccCCCCEEEEEEEE-------ecCceecccEEEEEEEeecCCEEEEecCCcEeccccceecCcCEEEEEEec
Confidence 3567778899999999887631 12233433110 00 01112233 46777776555555543
Q ss_pred CCCCCCCCCeeeEEecC
Q 026789 110 FPGHCLGGQKLAINVSA 126 (233)
Q Consensus 110 ~~~hC~~Gmk~~I~V~~ 126 (233)
+|..-|.+.|-|..
T Consensus 108 ---~s~~~q~idv~veD 121 (137)
T PF12988_consen 108 ---RSDDQQTIDVYVED 121 (137)
T ss_dssp ----SSS-EEEEEEEEE
T ss_pred ---CCCCCceeEEEEEe
Confidence 67778888877754
No 90
>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.
Probab=32.32 E-value=58 Score=26.59 Aligned_cols=18 Identities=22% Similarity=0.560 Sum_probs=13.9
Q ss_pred ChhHHHHHHHHHHHHhhh
Q 026789 1 MFNRFFLAAIAIAALVQS 18 (233)
Q Consensus 1 m~~~~~~~~~~~~~l~~~ 18 (233)
|.|+|+.++++++.|.+.
T Consensus 1 ~~~~~~~~~~~~~~~~~~ 18 (153)
T TIGR02738 1 MLRKLLIVLLLLAGLAQA 18 (153)
T ss_pred CchHHHHHHHHHHHHHhc
Confidence 889999888887777543
No 91
>cd05810 CBM20_alpha_MTH Glucan 1,4-alpha-maltotetraohydrolase (alpha-MTH), C-terminal CBM20 (carbohydrate-binding module, family 20) domain. Alpha-MTH, also known as maltotetraose-forming exo-amylase or G4-amylase, is an exo-amylase found in bacteria that degrades starch from its non-reducing end. Most alpha-MTHs have, in addition to the C-terminal CBM20 domain, an N-terminal glycosyl hydrolase family 13 catalytic domain. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognitio
Probab=31.47 E-value=48 Score=24.81 Aligned_cols=42 Identities=19% Similarity=0.501 Sum_probs=29.7
Q ss_pred ceEEEecCCC---CCccCCC---CCCCccccccCeeeeeCCEEEEEec
Q 026789 22 QTRHVVGDAL---GWIVPPN---GPATYSNWAANQTFTVGDTLVFNFA 63 (233)
Q Consensus 22 ~~~~~VGg~~---GW~~~~~---~~~~Y~~Wa~~~~f~vGD~L~F~y~ 63 (233)
+..+++|+.. .|+.... ....|..|-....+..|..|+|+|-
T Consensus 16 e~l~v~Gs~~~LG~W~~~~a~~l~~~~~~~W~~~v~lp~~~~veyKyv 63 (97)
T cd05810 16 QSVYVVGNVPQLGNWSPADAVKLDPTAYPTWSGSISLPASTNVEWKCL 63 (97)
T ss_pred CeEEEEEChHHhCCCChhhcccccCCCCCeEEEEEEcCCCCeEEEEEE
Confidence 4467888742 4885321 2346777988889999999999984
No 92
>PRK15313 autotransport protein MisL; Provisional
Probab=31.13 E-value=2.1e+02 Score=30.47 Aligned_cols=14 Identities=14% Similarity=0.524 Sum_probs=5.9
Q ss_pred EEeccCCCeeEecC
Q 026789 96 VTLTASGPHYFICS 109 (233)
Q Consensus 96 v~l~~~G~~yFic~ 109 (233)
..|.+.|..||..+
T Consensus 543 Y~L~k~~~nWYL~S 556 (955)
T PRK15313 543 YNVVQKGKNWYLTS 556 (955)
T ss_pred EEEEeCCCceEEEe
Confidence 33434444444433
No 93
>PRK10861 signal peptidase I; Provisional
Probab=30.94 E-value=97 Score=28.75 Aligned_cols=15 Identities=27% Similarity=0.492 Sum_probs=11.8
Q ss_pred eeeeeCCEEEEEecC
Q 026789 50 QTFTVGDTLVFNFAA 64 (233)
Q Consensus 50 ~~f~vGD~L~F~y~~ 64 (233)
...+-||+|+|++..
T Consensus 124 ~~p~RGDIVVF~~P~ 138 (324)
T PRK10861 124 GHPKRGDIVVFKYPE 138 (324)
T ss_pred CCCCCCCEEEEecCC
Confidence 456889999999864
No 94
>smart00495 ChtBD3 Chitin-binding domain type 3.
Probab=30.91 E-value=32 Score=21.37 Aligned_cols=18 Identities=28% Similarity=0.733 Sum_probs=13.9
Q ss_pred ccccccCeeeeeCCEEEE
Q 026789 43 YSNWAANQTFTVGDTLVF 60 (233)
Q Consensus 43 Y~~Wa~~~~f~vGD~L~F 60 (233)
|..|..++.-..||.|.+
T Consensus 1 ~~~W~~~~~Y~~Gd~V~~ 18 (41)
T smart00495 1 APAWQAGTVYTAGDVVSY 18 (41)
T ss_pred CCccCCCCcCcCCCEEEE
Confidence 456888877778998876
No 95
>TIGR03511 GldH_lipo gliding motility-associated lipoprotein GldH. Members of this protein family are predicted lipoproteins, exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). Members include GldH, a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Not all Bacteroidetes with members of this protein family may have gliding motility.
Probab=30.18 E-value=2.4e+02 Score=23.34 Aligned_cols=26 Identities=19% Similarity=0.281 Sum_probs=13.8
Q ss_pred CEEEEEecC----CCceEE-EE-cCCCCCcCC
Q 026789 56 DTLVFNFAA----GNHDVT-RV-TQSSFNACN 81 (233)
Q Consensus 56 D~L~F~y~~----~~H~V~-~V-~~~~y~~C~ 81 (233)
|+|.|++.. +.+++. .| +-.+|.-+|
T Consensus 42 d~l~F~~~~~d~~~~y~l~l~lR~n~~Ypy~n 73 (156)
T TIGR03511 42 DTLDFEIPITDYTASYRLFLLIRNDNRYPYRN 73 (156)
T ss_pred CcEEEEEeecCCCCcEEEEEEEEcCCCCcccC
Confidence 566666642 345553 34 455666554
No 96
>MTH00154 COX2 cytochrome c oxidase subunit II; Provisional
Probab=30.14 E-value=55 Score=28.62 Aligned_cols=30 Identities=17% Similarity=0.324 Sum_probs=24.0
Q ss_pred eEEeccCCCeeEecCCCCCCCCC---CeeeEEecC
Q 026789 95 SVTLTASGPHYFICSFPGHCLGG---QKLAINVSA 126 (233)
Q Consensus 95 ~v~l~~~G~~yFic~~~~hC~~G---mk~~I~V~~ 126 (233)
.++.+++|.||..|+ .-|..| |++.|.|.+
T Consensus 183 ~~~~~~~G~y~g~Cs--e~CG~~H~~M~~~v~vv~ 215 (227)
T MTH00154 183 NFLINRPGLFFGQCS--EICGANHSFMPIVIESVS 215 (227)
T ss_pred EEEEcCceEEEEEee--chhCcCccCCeEEEEEeC
Confidence 566789999999999 678776 888887654
No 97
>PRK13792 lysozyme inhibitor; Provisional
Probab=29.93 E-value=37 Score=27.28 Aligned_cols=19 Identities=16% Similarity=0.296 Sum_probs=11.4
Q ss_pred ChhHHHHHHHHHHHHhhhc
Q 026789 1 MFNRFFLAAIAIAALVQSS 19 (233)
Q Consensus 1 m~~~~~~~~~~~~~l~~~~ 19 (233)
|.+.+|++++.+++||.+|
T Consensus 1 mk~~l~~ll~~~~~lLsaC 19 (127)
T PRK13792 1 MKKALWLLLAAVPVVLVAC 19 (127)
T ss_pred ChhHHHHHHHHHHhheecc
Confidence 7777666555555555444
No 98
>PF06291 Lambda_Bor: Bor protein; InterPro: IPR010438 This family consists of several Bacteriophage lambda Bor and Escherichia coli Iss proteins. Expression of bor significantly increases the survival of the E. coli host cell in animal serum. This property is a well known bacterial virulence determinant indeed, bor and its adjacent sequences are highly homologous to the iss serum resistance locus of the plasmid ColV2-K94, which confers virulence in animals. It has been suggested that lysogeny may generally have a role in bacterial survival in animal hosts, and perhaps in pathogenesis [].
Probab=29.90 E-value=64 Score=24.71 Aligned_cols=19 Identities=32% Similarity=0.497 Sum_probs=11.0
Q ss_pred HHHHHhhhcccceEEEecCC
Q 026789 11 AIAALVQSSTAQTRHVVGDA 30 (233)
Q Consensus 11 ~~~~l~~~~~a~~~~~VGg~ 30 (233)
++++|+.+|+.+ ++.||+.
T Consensus 9 ~lallLtgCatq-t~~~~~~ 27 (97)
T PF06291_consen 9 ALALLLTGCATQ-TFTVGNQ 27 (97)
T ss_pred HHHHHHccccee-EEEeCCC
Confidence 335566666655 4558753
No 99
>cd05820 CBM20_novamyl Novamyl (also known as acarviose transferase, ATase, maltogenic alpha-amylase, glucan 1,4-alpha-maltohydrolase, and AcbD), C-terminal CBM20 (carbohydrate-binding module, family 20) domain. Novamyl has a five-domain structure similar to that of cyclodextrin glucanotransferase (CGTase). Novamyl has a substrate-binding surface with an open groove which can accommodate both cyclodextrins and linear substrates. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific reco
Probab=29.76 E-value=51 Score=24.84 Aligned_cols=43 Identities=16% Similarity=0.378 Sum_probs=30.4
Q ss_pred ceEEEecCC--C-CCccCC------CCCCCccccccCeeeeeCCEEEEEecC
Q 026789 22 QTRHVVGDA--L-GWIVPP------NGPATYSNWAANQTFTVGDTLVFNFAA 64 (233)
Q Consensus 22 ~~~~~VGg~--~-GW~~~~------~~~~~Y~~Wa~~~~f~vGD~L~F~y~~ 64 (233)
+..++||+. . .|+... .....|..|.....+..|..|+|+|-.
T Consensus 19 e~l~vvGs~~~LG~W~~~~~~a~~~l~~~~~~~W~~~~~lp~~~~veyK~v~ 70 (103)
T cd05820 19 EFLYLTGSVPELGNWSTSTDQAVGPLLCPNWPDWFVVASVPAGTYIEFKFLK 70 (103)
T ss_pred CEEEEEECcHHhCCCChhccccccccccCCCCCEEEEEEcCCCCcEEEEEEE
Confidence 456788874 2 498621 112577889888889999999999953
No 100
>PRK10081 entericidin B membrane lipoprotein; Provisional
Probab=29.36 E-value=32 Score=23.06 Aligned_cols=8 Identities=25% Similarity=0.330 Sum_probs=4.1
Q ss_pred ChhHHHHH
Q 026789 1 MFNRFFLA 8 (233)
Q Consensus 1 m~~~~~~~ 8 (233)
|.||.+.+
T Consensus 1 MmKk~i~~ 8 (48)
T PRK10081 1 MVKKTIAA 8 (48)
T ss_pred ChHHHHHH
Confidence 55655443
No 101
>PRK12698 flgH flagellar basal body L-ring protein; Reviewed
Probab=29.19 E-value=81 Score=27.66 Aligned_cols=18 Identities=17% Similarity=0.383 Sum_probs=13.4
Q ss_pred cccCeeeeeCCEEEEEec
Q 026789 46 WAANQTFTVGDTLVFNFA 63 (233)
Q Consensus 46 Wa~~~~f~vGD~L~F~y~ 63 (233)
.++.+-.+|||+|.....
T Consensus 58 f~D~rA~~VGDivTV~i~ 75 (224)
T PRK12698 58 YSDIKAHKVGDIITVVLK 75 (224)
T ss_pred ccccccccCCCeEEEEEE
Confidence 345677899999977553
No 102
>PRK09973 putative outer membrane lipoprotein; Provisional
Probab=29.12 E-value=51 Score=24.71 Aligned_cols=21 Identities=19% Similarity=0.349 Sum_probs=13.7
Q ss_pred ChhHHHHHHHHH-HHHhhhccc
Q 026789 1 MFNRFFLAAIAI-AALVQSSTA 21 (233)
Q Consensus 1 m~~~~~~~~~~~-~~l~~~~~a 21 (233)
|.+++++.++++ ++|+.+|+.
T Consensus 1 mk~klll~aviLs~~LLaGCAs 22 (85)
T PRK09973 1 MKTIFTVGAVVLATCLLSGCVN 22 (85)
T ss_pred CchhHHHHHHHHHHHHHHHcCC
Confidence 778887776665 445666654
No 103
>MTH00168 COX2 cytochrome c oxidase subunit II; Provisional
Probab=28.70 E-value=57 Score=28.42 Aligned_cols=30 Identities=17% Similarity=0.336 Sum_probs=23.9
Q ss_pred eEEeccCCCeeEecCCCCCCCCC---CeeeEEecC
Q 026789 95 SVTLTASGPHYFICSFPGHCLGG---QKLAINVSA 126 (233)
Q Consensus 95 ~v~l~~~G~~yFic~~~~hC~~G---mk~~I~V~~ 126 (233)
.++.+++|.+|..|+ .-|..| |.+.|.|.+
T Consensus 183 ~~~~~~~G~~~g~Cs--E~CG~~Hs~M~~~v~vv~ 215 (225)
T MTH00168 183 AFLSSRPGSFYGQCS--EICGANHSFMPIVVEFVP 215 (225)
T ss_pred EEEcCCCEEEEEEcc--cccCcCcCCCeEEEEEeC
Confidence 466789999999999 678776 888887754
No 104
>MTH00117 COX2 cytochrome c oxidase subunit II; Provisional
Probab=28.21 E-value=68 Score=28.02 Aligned_cols=30 Identities=23% Similarity=0.339 Sum_probs=23.8
Q ss_pred eEEeccCCCeeEecCCCCCCCCC---CeeeEEecC
Q 026789 95 SVTLTASGPHYFICSFPGHCLGG---QKLAINVSA 126 (233)
Q Consensus 95 ~v~l~~~G~~yFic~~~~hC~~G---mk~~I~V~~ 126 (233)
.++.+++|.||-.|+ .-|..| |.+.|.|.+
T Consensus 183 ~~~~~~~G~y~g~Cs--E~CG~~Hs~M~~~v~vv~ 215 (227)
T MTH00117 183 SFITTRPGVFYGQCS--EICGANHSFMPIVVESVP 215 (227)
T ss_pred EEEEcccceEEEEec--cccccCccCCeEEEEEcC
Confidence 456789999999999 578775 888887754
No 105
>PRK09752 adhesin; Provisional
Probab=27.77 E-value=72 Score=34.64 Aligned_cols=6 Identities=67% Similarity=0.994 Sum_probs=2.9
Q ss_pred CEEEEE
Q 026789 56 DTLVFN 61 (233)
Q Consensus 56 D~L~F~ 61 (233)
|.|+.+
T Consensus 839 DrLvI~ 844 (1250)
T PRK09752 839 DQLVLN 844 (1250)
T ss_pred ceEEEe
Confidence 455443
No 106
>PRK13884 conjugal transfer peptidase TraF; Provisional
Probab=27.58 E-value=42 Score=28.17 Aligned_cols=18 Identities=17% Similarity=0.458 Sum_probs=13.8
Q ss_pred cccCeeeeeCCEEEEEec
Q 026789 46 WAANQTFTVGDTLVFNFA 63 (233)
Q Consensus 46 Wa~~~~f~vGD~L~F~y~ 63 (233)
|-....++.||.|.|...
T Consensus 45 ~~~~~~~~~Gd~V~f~~p 62 (178)
T PRK13884 45 WTSSAPVEKGAYVLFCPP 62 (178)
T ss_pred EEeCCCCCCCCEEEEeCC
Confidence 344567899999999854
No 107
>TIGR01432 QOXA cytochrome aa3 quinol oxidase, subunit II. This enzyme catalyzes the oxidation of quinol with the concomitant reduction of molecular oxygen to water. This acts as the terminal electron acceptor in the respiratory chain. This subunit contains two transmembrane helices and a large external domain responsible for the binding and oxidation of quinol. QuoX is (presently) only found in gram positive bacteria of the Bacillus/Staphylococcus group. Like CyoA, the ubiquinol oxidase found in proteobacteria, the residues responsible for the ligation of Cu(a) and cytochrome c (found in the related cyt. c oxidases) are absent. Unlike CyoA, QoxA is in complex with a subunit I which contains cytochromes a similar to the cyt. c oxidases (as opposed to cytochromes b).
Probab=27.25 E-value=3.4e+02 Score=23.29 Aligned_cols=31 Identities=13% Similarity=0.000 Sum_probs=25.1
Q ss_pred ceEEeccCCCeeEecCCCCCCCCC---CeeeEEecC
Q 026789 94 ASVTLTASGPHYFICSFPGHCLGG---QKLAINVSA 126 (233)
Q Consensus 94 ~~v~l~~~G~~yFic~~~~hC~~G---mk~~I~V~~ 126 (233)
..++-+++|.|+-.|+ ..|..| |++.|.|.+
T Consensus 172 ~~~~~~~~G~y~g~Ca--e~CG~~Hs~M~~~v~v~~ 205 (217)
T TIGR01432 172 WYLQADQVGTYRGRNA--NFNGEGFADQTFDVNAVS 205 (217)
T ss_pred EEEEeCCCEEEEEEeh--hhcCccccCCeEEEEEeC
Confidence 3577789999999999 578775 888888764
No 108
>PRK10525 cytochrome o ubiquinol oxidase subunit II; Provisional
Probab=27.17 E-value=2.9e+02 Score=25.55 Aligned_cols=85 Identities=13% Similarity=0.085 Sum_probs=49.2
Q ss_pred eEEEecCCCCCccCCCCCCCccc----cccCeeeeeCCEEEEEecCC--CceEEEEcCCCCCcCCCCCCCCcCC-CCC--
Q 026789 23 TRHVVGDALGWIVPPNGPATYSN----WAANQTFTVGDTLVFNFAAG--NHDVTRVTQSSFNACNTTSPLSRTT-NSP-- 93 (233)
Q Consensus 23 ~~~~VGg~~GW~~~~~~~~~Y~~----Wa~~~~f~vGD~L~F~y~~~--~H~V~~V~~~~y~~C~~~~~~~~~~-~G~-- 93 (233)
+..++|-.=.|.+. |.+ =.+...+-+|--|.|+-.+. .|+... ..-..+.+. .|-
T Consensus 128 ~I~Vvg~QW~W~f~------YP~~gi~t~NeL~iP~g~pV~f~lTS~DViHSF~I----------P~Lg~K~damPG~~n 191 (315)
T PRK10525 128 TIEVVSMDWKWFFI------YPEQGIATVNEIAFPANVPVYFKVTSNSVMNSFFI----------PRLGSQIYAMAGMQT 191 (315)
T ss_pred EEEEEEEeeeEEEE------cCCCCceeeccEEEecCCEEEEEEEEchhhhhhhh----------hhhCCeeecCCCcee
Confidence 35556766678772 221 01345677888888877642 132221 111111111 232
Q ss_pred -ceEEeccCCCeeEecCCCCCCCCC---CeeeEEec
Q 026789 94 -ASVTLTASGPHYFICSFPGHCLGG---QKLAINVS 125 (233)
Q Consensus 94 -~~v~l~~~G~~yFic~~~~hC~~G---mk~~I~V~ 125 (233)
..++.+++|.|+-.|+ ..|..| |++.|.+.
T Consensus 192 ~l~~~a~~~G~Y~G~Ca--EyCG~gHs~M~f~v~v~ 225 (315)
T PRK10525 192 RLHLIANEPGTYDGISA--SYSGPGFSGMKFKAIAT 225 (315)
T ss_pred EEEEEcCCCEEEEEECh--hhcCccccCCeEEEEEE
Confidence 3566789999999999 678775 88888765
No 109
>PF11008 DUF2846: Protein of unknown function (DUF2846); InterPro: IPR022548 Some members in this group of proteins with unknown function are annotated as lipoproteins. However this cannot be confirmed.
Probab=27.06 E-value=2.4e+02 Score=21.48 Aligned_cols=29 Identities=14% Similarity=0.116 Sum_probs=18.3
Q ss_pred cCeeeeeCCEEEEEecCCCceEEEEcCCC
Q 026789 48 ANQTFTVGDTLVFNFAAGNHDVTRVTQSS 76 (233)
Q Consensus 48 ~~~~f~vGD~L~F~y~~~~H~V~~V~~~~ 76 (233)
....+++.|.++.+-.++..-+++|....
T Consensus 41 ~~~~v~vdg~~ig~l~~g~y~~~~v~pG~ 69 (117)
T PF11008_consen 41 VKPDVYVDGELIGELKNGGYFYVEVPPGK 69 (117)
T ss_pred ccceEEECCEEEEEeCCCeEEEEEECCCc
Confidence 45567777777777666656666654433
No 110
>COG3627 PhnJ Uncharacterized enzyme of phosphonate metabolism [Inorganic ion transport and metabolism]
Probab=26.74 E-value=36 Score=29.94 Aligned_cols=24 Identities=29% Similarity=0.537 Sum_probs=21.4
Q ss_pred ceEEeccCCCeeEecCCCCCCCCC
Q 026789 94 ASVTLTASGPHYFICSFPGHCLGG 117 (233)
Q Consensus 94 ~~v~l~~~G~~yFic~~~~hC~~G 117 (233)
+.|.+++-|.+-|+|+.-.||+.-
T Consensus 257 DEvi~DD~G~rmfvCSDTD~C~~r 280 (291)
T COG3627 257 DEVVLDDKGGRMFVCSDTDFCEQR 280 (291)
T ss_pred eeeEEcCCCceEEEecCchHHHhH
Confidence 578889899999999999999864
No 111
>TIGR00752 slp outer membrane lipoprotein, Slp family. Slp superfamily members are present in the Gram-negative gamma proteobacteria Escherichia coli, which also contains a close paralog, Haemophilus influenzae and Pasteurella multocida and Vibrio cholera. The known members of the family to date share a motif LX[GA]C near the N-terminus, which is compatible with the possibility that the protein is modified into a lipoprotein with Cys as the new N-terminus. Slp from Escherichia coli is known to be a lipoprotein of the outer membrane and to be expressed in response to carbon starvation.
Probab=26.73 E-value=90 Score=26.57 Aligned_cols=31 Identities=16% Similarity=0.191 Sum_probs=17.9
Q ss_pred CccccccCe------eeeeCCEEEEEecCCCceEEEE
Q 026789 42 TYSNWAANQ------TFTVGDTLVFNFAAGNHDVTRV 72 (233)
Q Consensus 42 ~Y~~Wa~~~------~f~vGD~L~F~y~~~~H~V~~V 72 (233)
+|..+.++- .+..|=+|+=.-+...++.+||
T Consensus 35 ~~~~v~~~p~~y~G~~Vr~GG~I~~v~N~~~~T~lEV 71 (182)
T TIGR00752 35 SYVEVSPQPLLYVGQTARFGGKVVNVTNLANQTKLEI 71 (182)
T ss_pred chHHHhhChhhcCCCEEEECCEEEEEEECCCceEEEE
Confidence 566666444 4555555544444456788887
No 112
>MTH00139 COX2 cytochrome c oxidase subunit II; Provisional
Probab=26.44 E-value=63 Score=28.12 Aligned_cols=30 Identities=17% Similarity=0.337 Sum_probs=24.1
Q ss_pred eEEeccCCCeeEecCCCCCCCCC---CeeeEEecC
Q 026789 95 SVTLTASGPHYFICSFPGHCLGG---QKLAINVSA 126 (233)
Q Consensus 95 ~v~l~~~G~~yFic~~~~hC~~G---mk~~I~V~~ 126 (233)
.++.+++|.||..|+ .-|..| |.+.|.|.+
T Consensus 183 ~~~~~~~G~y~g~Cs--E~CG~~Hs~M~~~v~vv~ 215 (226)
T MTH00139 183 GFFINRPGVFYGQCS--EICGANHSFMPIVVEAIS 215 (226)
T ss_pred EEEcCCCEEEEEECh--hhcCcCcCCCeEEEEEeC
Confidence 566789999999999 678776 888887754
No 113
>PRK01904 hypothetical protein; Provisional
Probab=26.42 E-value=2.3e+02 Score=24.46 Aligned_cols=16 Identities=6% Similarity=0.075 Sum_probs=9.3
Q ss_pred CeeeeeC--CEEEEEecC
Q 026789 49 NQTFTVG--DTLVFNFAA 64 (233)
Q Consensus 49 ~~~f~vG--D~L~F~y~~ 64 (233)
..++.-| -.|+|+|..
T Consensus 50 ~l~L~dgg~hQIv~ry~~ 67 (219)
T PRK01904 50 SFNINDTQVHQVVVRVSE 67 (219)
T ss_pred ceEeCCCCceEEEEEEee
Confidence 3445443 567777754
No 114
>MTH00129 COX2 cytochrome c oxidase subunit II; Provisional
Probab=26.22 E-value=63 Score=28.27 Aligned_cols=30 Identities=17% Similarity=0.329 Sum_probs=23.2
Q ss_pred eEEeccCCCeeEecCCCCCCCCC---CeeeEEecC
Q 026789 95 SVTLTASGPHYFICSFPGHCLGG---QKLAINVSA 126 (233)
Q Consensus 95 ~v~l~~~G~~yFic~~~~hC~~G---mk~~I~V~~ 126 (233)
.+..+++|.||..|+ .-|..| |++.|.|.+
T Consensus 183 ~~~~~~~G~~~g~C~--e~CG~~H~~M~~~v~vv~ 215 (230)
T MTH00129 183 AFIASRPGVFYGQCS--EICGANHSFMPIVVEAVP 215 (230)
T ss_pred EEEeCCceEEEEECh--hhccccccCCcEEEEEEC
Confidence 456689999999999 577665 888887754
No 115
>MTH00038 COX2 cytochrome c oxidase subunit II; Provisional
Probab=26.06 E-value=69 Score=28.00 Aligned_cols=30 Identities=20% Similarity=0.365 Sum_probs=23.9
Q ss_pred eEEeccCCCeeEecCCCCCCCCC---CeeeEEecC
Q 026789 95 SVTLTASGPHYFICSFPGHCLGG---QKLAINVSA 126 (233)
Q Consensus 95 ~v~l~~~G~~yFic~~~~hC~~G---mk~~I~V~~ 126 (233)
.++.+++|.||..|+ .-|..| |.+.|.|.+
T Consensus 183 ~~~~~~~G~~~g~Cs--e~CG~~Hs~M~~~v~vv~ 215 (229)
T MTH00038 183 TFFISRTGLFYGQCS--EICGANHSFMPIVIESVP 215 (229)
T ss_pred EEEcCCCEEEEEEcc--cccCcCcCCCeEEEEEeC
Confidence 466789999999999 678776 888887754
No 116
>PF06586 TraK: TraK protein; InterPro: IPR010563 This family consists of several TraK proteins from Escherichia coli, Salmonella typhi and Salmonella typhimurium. TraK is known to be essential for pilus assembly but its exact role in this process is unknown [].
Probab=26.02 E-value=4.2e+02 Score=22.64 Aligned_cols=11 Identities=27% Similarity=0.223 Sum_probs=4.3
Q ss_pred ChhHHHHHHHH
Q 026789 1 MFNRFFLAAIA 11 (233)
Q Consensus 1 m~~~~~~~~~~ 11 (233)
-.++++|++++
T Consensus 2 ~~~~l~~~~~l 12 (234)
T PF06586_consen 2 KAKALLLAAAL 12 (234)
T ss_pred cHHHHHHHHHH
Confidence 04444444333
No 117
>MTH00098 COX2 cytochrome c oxidase subunit II; Validated
Probab=25.94 E-value=67 Score=28.09 Aligned_cols=30 Identities=20% Similarity=0.339 Sum_probs=23.1
Q ss_pred eEEeccCCCeeEecCCCCCCCCC---CeeeEEecC
Q 026789 95 SVTLTASGPHYFICSFPGHCLGG---QKLAINVSA 126 (233)
Q Consensus 95 ~v~l~~~G~~yFic~~~~hC~~G---mk~~I~V~~ 126 (233)
.++.+++|.+|..|+ .-|..| |.+.|.|.+
T Consensus 183 ~~~~~~~G~~~g~Cs--e~CG~~H~~M~~~v~v~~ 215 (227)
T MTH00098 183 TLMSTRPGLYYGQCS--EICGSNHSFMPIVLELVP 215 (227)
T ss_pred EEecCCcEEEEEECc--cccCcCcCCceEEEEEeC
Confidence 456689999999999 577765 777777654
No 118
>PLN03024 Putative EG45-like domain containing protein 1; Provisional
Probab=25.52 E-value=39 Score=26.97 Aligned_cols=20 Identities=20% Similarity=0.257 Sum_probs=14.3
Q ss_pred ChhHHHHHHHHHHHHhhhcc
Q 026789 1 MFNRFFLAAIAIAALVQSST 20 (233)
Q Consensus 1 m~~~~~~~~~~~~~l~~~~~ 20 (233)
|-|++||++-|++.|++.+.
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~ 20 (125)
T PLN03024 1 MSKRILIFSTVLVFLFSVSY 20 (125)
T ss_pred CceeeHHHHHHHHHHhhhhc
Confidence 78889888777666665543
No 119
>PRK15240 resistance to complement killing; Provisional
Probab=25.22 E-value=54 Score=27.73 Aligned_cols=16 Identities=19% Similarity=0.029 Sum_probs=9.4
Q ss_pred ChhHHHHHHHHHHHHh
Q 026789 1 MFNRFFLAAIAIAALV 16 (233)
Q Consensus 1 m~~~~~~~~~~~~~l~ 16 (233)
|.|+++++++++++++
T Consensus 1 Mkk~~~~~~~~~~~~~ 16 (185)
T PRK15240 1 MKKIVLSSLLLSAAGL 16 (185)
T ss_pred CchhHHHHHHHHHHHh
Confidence 7777766655544333
No 120
>PRK15319 AIDA autotransporter-like protein ShdA; Provisional
Probab=24.76 E-value=2.3e+02 Score=32.60 Aligned_cols=82 Identities=18% Similarity=0.211 Sum_probs=0.0
Q ss_pred CCceEEecc--CCCeeEecCCCCCCCCCCeeeEEecCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q 026789 92 SPASVTLTA--SGPHYFICSFPGHCLGGQKLAINVSARGSSPAPQPSSPAPQPSGSTPSPVPAPARTPTPAPAPAPEPAT 169 (233)
Q Consensus 92 G~~~v~l~~--~G~~yFic~~~~hC~~Gmk~~I~V~~~~a~P~P~p~~~~~~p~~~~~~p~~~p~~~~~~~p~p~~~~~p 169 (233)
|.+...|.+ .+..||..+ .+........+.+.|.++.-++.++.|..++.+++.+.|++.+..+..+
T Consensus 1646 GAYeY~L~kg~~d~nWYLrS-----------~l~~~pp~~~~~~~P~~~~d~~~~~~PP~~p~~~~~v~Pp~p~~~~~~~ 1714 (2039)
T PRK15319 1646 GLYTYRLYWNESDNDWYLAS-----------KAQSDDDDSGGDDTPSDGGDDGGNVTPPDDGGDGGNVTPPDDGGDGGDV 1714 (2039)
T ss_pred ccEEEEEEcCCCCCCceEee-----------CCCCCCCccccccCCCCccccccCCCCCccccccccCCCCCccccccCC
Q ss_pred CCCCCCCCCCCCCCCC
Q 026789 170 TPTPAPASAPTPTPRS 185 (233)
Q Consensus 170 ~p~~~~~~~~~p~~~~ 185 (233)
.| |.+.+.+.|.-++
T Consensus 1715 tP-P~~~g~~~P~YRP 1729 (2039)
T PRK15319 1715 TP-PDHGGDVAPQYRA 1729 (2039)
T ss_pred CC-CCcCCCCcccccC
No 121
>PF05984 Cytomega_UL20A: Cytomegalovirus UL20A protein; InterPro: IPR009245 This family consists of several Cytomegalovirus UL20A proteins. UL20A is thought to be a glycoprotein [].
Probab=24.25 E-value=65 Score=24.26 Aligned_cols=12 Identities=17% Similarity=0.448 Sum_probs=8.5
Q ss_pred ChhHHHHHHHHH
Q 026789 1 MFNRFFLAAIAI 12 (233)
Q Consensus 1 m~~~~~~~~~~~ 12 (233)
|.|++.|+.++.
T Consensus 1 MaRRlwiLslLA 12 (100)
T PF05984_consen 1 MARRLWILSLLA 12 (100)
T ss_pred CchhhHHHHHHH
Confidence 889887765553
No 122
>PF11949 DUF3466: Protein of unknown function (DUF3466); InterPro: IPR022562 This family of bacterial proteins are functionally uncharacterised. Proteins in this family are typically between 564 to 612 amino acids in length.
Probab=24.09 E-value=61 Score=32.56 Aligned_cols=18 Identities=22% Similarity=0.348 Sum_probs=12.1
Q ss_pred ChhHHHHHHHHHHHHhhh
Q 026789 1 MFNRFFLAAIAIAALVQS 18 (233)
Q Consensus 1 m~~~~~~~~~~~~~l~~~ 18 (233)
|-|+|-|++++++++++.
T Consensus 1 ~~k~lkL~avavL~a~s~ 18 (599)
T PF11949_consen 1 MSKKLKLLAVAVLVALST 18 (599)
T ss_pred CCchhhHHHHHHHHHhhh
Confidence 778887777665555543
No 123
>COG4939 Major membrane immunogen, membrane-anchored lipoprotein [Function unknown]
Probab=23.69 E-value=1.5e+02 Score=24.10 Aligned_cols=15 Identities=13% Similarity=0.271 Sum_probs=11.0
Q ss_pred CeeeeeCCEEEEEec
Q 026789 49 NQTFTVGDTLVFNFA 63 (233)
Q Consensus 49 ~~~f~vGD~L~F~y~ 63 (233)
.++|+-|-++.-+|+
T Consensus 51 ~iti~dGKiv~~~yd 65 (147)
T COG4939 51 TITIQDGKIVACTYD 65 (147)
T ss_pred EEEEeCCEEEEEEee
Confidence 467788888877665
No 124
>PRK00807 50S ribosomal protein L24e; Validated
Probab=23.45 E-value=31 Score=23.27 Aligned_cols=41 Identities=17% Similarity=0.353 Sum_probs=23.3
Q ss_pred cCCCCCCCCcCCCCCceEEeccCCCeeEecCCCCCCCCCCeeeEE
Q 026789 79 ACNTTSPLSRTTNSPASVTLTASGPHYFICSFPGHCLGGQKLAIN 123 (233)
Q Consensus 79 ~C~~~~~~~~~~~G~~~v~l~~~G~~yFic~~~~hC~~Gmk~~I~ 123 (233)
.|+..+-. ...|.....+...|..||+|+ ..|..-.++..+
T Consensus 3 ~C~fcG~~--I~pg~G~~~vr~Dgkv~~Fcs--~KC~~~f~~~~n 43 (52)
T PRK00807 3 TCSFCGKE--IEPGTGKMYVKKDGTILYFCS--SKCEKNYKLGRV 43 (52)
T ss_pred ccCCCCCe--EcCCCCeEEEEeCCcEEEEeC--HHHHHHHHccCC
Confidence 46655321 123344444555788888888 677765544443
No 125
>MTH00023 COX2 cytochrome c oxidase subunit II; Validated
Probab=23.28 E-value=78 Score=27.88 Aligned_cols=30 Identities=20% Similarity=0.351 Sum_probs=24.1
Q ss_pred eEEeccCCCeeEecCCCCCCCCC---CeeeEEecC
Q 026789 95 SVTLTASGPHYFICSFPGHCLGG---QKLAINVSA 126 (233)
Q Consensus 95 ~v~l~~~G~~yFic~~~~hC~~G---mk~~I~V~~ 126 (233)
.++.+++|.|+..|+ ..|..| |.+.|.|.+
T Consensus 194 ~~~~~~~G~y~g~C~--e~CG~~Hs~M~~~v~vv~ 226 (240)
T MTH00023 194 GFFIKRPGVFYGQCS--EICGANHSFMPIVIEAVS 226 (240)
T ss_pred EEEcCCCEEEEEEch--hhcCcCccCCeEEEEEEC
Confidence 466789999999999 678776 888887654
No 126
>PF11604 CusF_Ec: Copper binding periplasmic protein CusF; InterPro: IPR021647 CusF is a periplasmic protein involved in copper and silver resistance in Escherichia coil. CusF forms a five-stranded beta-barrel OB fold. Cu(I) binds to H36, M47 and M49 which are conserved residues in the protein []. ; PDB: 2L55_A 2VB3_X 1ZEQ_X 2QCP_X 3E6Z_X 2VB2_X.
Probab=23.21 E-value=53 Score=23.23 Aligned_cols=20 Identities=20% Similarity=0.248 Sum_probs=13.7
Q ss_pred cccCeeeeeCCEEEEEecCC
Q 026789 46 WAANQTFTVGDTLVFNFAAG 65 (233)
Q Consensus 46 Wa~~~~f~vGD~L~F~y~~~ 65 (233)
-+.-..+++||.|.|.+...
T Consensus 37 ~~~l~~l~~Gd~V~F~~~~~ 56 (70)
T PF11604_consen 37 PVDLAGLKPGDKVRFTFERT 56 (70)
T ss_dssp TSEESS-STT-EEEEEEEEE
T ss_pred hhhhhcCCCCCEEEEEEEEC
Confidence 33446799999999999863
No 127
>PRK10002 outer membrane protein F; Provisional
Probab=23.10 E-value=78 Score=29.22 Aligned_cols=20 Identities=40% Similarity=0.471 Sum_probs=9.0
Q ss_pred ChhHHHHHHHHHHHHhhhcc
Q 026789 1 MFNRFFLAAIAIAALVQSST 20 (233)
Q Consensus 1 m~~~~~~~~~~~~~l~~~~~ 20 (233)
|.||.+|++++.++|+..++
T Consensus 1 ~mkktl~a~a~~a~~~a~~a 20 (362)
T PRK10002 1 MMKRNILAVIVPALLVAGTA 20 (362)
T ss_pred CccHhHHHHHHHHHHHhccc
Confidence 56665554333333443333
No 128
>COG5569 Uncharacterized conserved protein [Function unknown]
Probab=22.89 E-value=72 Score=24.75 Aligned_cols=25 Identities=28% Similarity=0.430 Sum_probs=17.0
Q ss_pred cCeeeeeCCEEEEEecC--CCceEEEE
Q 026789 48 ANQTFTVGDTLVFNFAA--GNHDVTRV 72 (233)
Q Consensus 48 ~~~~f~vGD~L~F~y~~--~~H~V~~V 72 (233)
.-..|+-||.|.|.|.. |.-.|+||
T Consensus 80 ~lsglKeGdkV~fvferv~gk~tv~qv 106 (108)
T COG5569 80 KLSGLKEGDKVEFVFERVNGKLTVQQV 106 (108)
T ss_pred HhhccccCCcEEEEEEeeCCEEEEEEe
Confidence 33457789999999985 34455554
No 129
>KOG1568 consensus Mitochondrial inner membrane protease, subunit IMP2 [Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=22.83 E-value=42 Score=28.36 Aligned_cols=45 Identities=18% Similarity=0.351 Sum_probs=26.4
Q ss_pred EEecCCCCCccCCCCCCCcc------ccccC-eeeeeCCEEEEEecCCCceE
Q 026789 25 HVVGDALGWIVPPNGPATYS------NWAAN-QTFTVGDTLVFNFAAGNHDV 69 (233)
Q Consensus 25 ~~VGg~~GW~~~~~~~~~Y~------~Wa~~-~~f~vGD~L~F~y~~~~H~V 69 (233)
.+.|.+-+=++.+....++. .|--. ..+..||.|+|+=.+....+
T Consensus 35 ~v~G~smqPtlnP~~~~~~~d~Vll~k~~v~n~~~~rGDiVvl~sP~~p~~~ 86 (174)
T KOG1568|consen 35 QVYGSSMQPTLNPTMNTNEKDTVLLRKWNVKNRKVSRGDIVVLKSPNDPDKV 86 (174)
T ss_pred EEecCcCCCccCCCcccccccEEEEEeeccccceeccCCEEEEeCCCChhhe
Confidence 45677777666554444442 34322 24668999999876543333
No 130
>PF11766 Candida_ALS_N: Cell-wall agglutinin N-terminal ligand-sugar binding ; InterPro: IPR024672 This N-terminal domain is likely to be the sugar or ligand binding domain of yeast alpha-agglutinin [] and agglutinin-like (ALS) proteins.; PDB: 2YLH_A 2Y7M_A 2Y7L_A 2Y7O_A 2Y7N_A.
Probab=22.70 E-value=33 Score=30.69 Aligned_cols=36 Identities=25% Similarity=0.528 Sum_probs=22.3
Q ss_pred CeeeeeCCEE------EEEecCCCceEEEE-cCCCCCcCCCCC
Q 026789 49 NQTFTVGDTL------VFNFAAGNHDVTRV-TQSSFNACNTTS 84 (233)
Q Consensus 49 ~~~f~vGD~L------~F~y~~~~H~V~~V-~~~~y~~C~~~~ 84 (233)
.-.++.||+. ||||...+.+|... +...|..|....
T Consensus 6 gs~v~~GDtFtL~MPcVfKf~t~~~sv~L~~~~~~yAtC~~~~ 48 (249)
T PF11766_consen 6 GSNVSPGDTFTLTMPCVFKFTTSQTSVDLTAGGTTYATCTFQS 48 (249)
T ss_dssp TTT--TT-EEEEEEETEEEESSS-SEEEEEETTEEEEEEEEE-
T ss_pred ccccCCCCEEEEecceEEEEecCCCEEEEEeCCEEEEEecccC
Confidence 4568899987 78888766677543 666888887643
No 131
>PF04945 YHS: YHS domain; InterPro: IPR007029 This short presumed domain is about 50 amino acid residues long. It often contains two cysteines that may be functionally important. This domain is found in copper transporting ATPases, some phenol hydroxylases and in a set of uncharacterised membrane proteins including Q9CNI0 from SWISSPROT. This domain is named after three of the most conserved amino acids it contains. The domain may be metal binding, possibly copper ions. This domain is duplicated in some copper transporting ATPases.; PDB: 3U52_B 2INN_A 2INP_B 1T0Q_A 2RDB_A 1T0R_A 2IND_A 1T0S_A 2INC_A 3DHI_A ....
Probab=22.64 E-value=35 Score=21.97 Aligned_cols=23 Identities=26% Similarity=0.625 Sum_probs=13.8
Q ss_pred CCCceEEeccCCCeeEecCCCCCCC
Q 026789 91 NSPASVTLTASGPHYFICSFPGHCL 115 (233)
Q Consensus 91 ~G~~~v~l~~~G~~yFic~~~~hC~ 115 (233)
.+...+.+...|..|++|+ .+|.
T Consensus 11 ~~~~~~~~~y~G~~Y~FCS--~~C~ 33 (47)
T PF04945_consen 11 PGNAAYSVEYNGRTYYFCS--EGCK 33 (47)
T ss_dssp -----EEEEETTEEEEESS--HHHH
T ss_pred ccCccEEEEECCEEEEEcC--HHHH
Confidence 3445666777899999998 4553
No 132
>COG0681 LepB Signal peptidase I [Intracellular trafficking and secretion]
Probab=22.46 E-value=1.1e+02 Score=24.21 Aligned_cols=8 Identities=50% Similarity=0.800 Sum_probs=3.8
Q ss_pred CCEEEEEe
Q 026789 55 GDTLVFNF 62 (233)
Q Consensus 55 GD~L~F~y 62 (233)
||+++|+-
T Consensus 88 GD~i~~~~ 95 (166)
T COG0681 88 GDIVVFKD 95 (166)
T ss_pred CCEEEEEC
Confidence 44444444
No 133
>PRK13733 conjugal transfer protein TraV; Provisional
Probab=21.95 E-value=68 Score=27.14 Aligned_cols=21 Identities=14% Similarity=0.099 Sum_probs=12.8
Q ss_pred ChhHHHHHHHHHHHHhhhccc
Q 026789 1 MFNRFFLAAIAIAALVQSSTA 21 (233)
Q Consensus 1 m~~~~~~~~~~~~~l~~~~~a 21 (233)
|.+.+.|++|..++||.+|+.
T Consensus 1 MK~~~~li~l~~~LlL~GCAg 21 (171)
T PRK13733 1 MKQISLLIPLLGTLLLSGCAG 21 (171)
T ss_pred CchhhHHHHHHHHHHhccccC
Confidence 776555555555566666654
No 134
>PF14755 ER-remodelling: Intracellular membrane remodeller
Probab=21.82 E-value=1.7e+02 Score=23.74 Aligned_cols=7 Identities=71% Similarity=0.985 Sum_probs=5.2
Q ss_pred cCCceec
Q 026789 226 SVGDILG 232 (233)
Q Consensus 226 ~vGD~L~ 232 (233)
.+||+|+
T Consensus 129 ~~gd~l~ 135 (148)
T PF14755_consen 129 SVGDVLV 135 (148)
T ss_pred HhhHHHH
Confidence 4788886
No 135
>PRK09752 adhesin; Provisional
Probab=21.77 E-value=1e+02 Score=33.56 Aligned_cols=7 Identities=57% Similarity=0.857 Sum_probs=4.0
Q ss_pred eCCEEEE
Q 026789 54 VGDTLVF 60 (233)
Q Consensus 54 vGD~L~F 60 (233)
+|++|..
T Consensus 809 ~g~tLTV 815 (1250)
T PRK09752 809 AGDTLTV 815 (1250)
T ss_pred CCCeEEE
Confidence 5565555
No 136
>PRK15137 DNA-specific endonuclease I; Provisional
Probab=21.67 E-value=64 Score=28.66 Aligned_cols=18 Identities=22% Similarity=0.455 Sum_probs=12.7
Q ss_pred ChhHHHHHHHHHHHHhhh
Q 026789 1 MFNRFFLAAIAIAALVQS 18 (233)
Q Consensus 1 m~~~~~~~~~~~~~l~~~ 18 (233)
|.|+++|++++.++|+..
T Consensus 1 ~~~~~~~~~~~~~~~~~~ 18 (235)
T PRK15137 1 MYRNLSIAAVLLSAAFSG 18 (235)
T ss_pred CchhHHHHHHHHHHHhhh
Confidence 899998877665555543
No 137
>PF04014 Antitoxin-MazE: Antidote-toxin recognition MazE; InterPro: IPR007159 This domain is found in AbrB from Bacillus subtilis. The product of the abrB gene is an ambiactive repressor and activator of the transcription of genes expressed during the transition state between vegetative growth and the onset of stationary phase and sporulation []. AbrB is thought to interact directly with the transcription initiation regions of genes under its control []. AbrB contains a helix-turn-helix structure, but this domain ends before the helix-turn-helix begins []. The product of the B. subtilis gene spoVT is another member of this family and is also a transcriptional regulator []. DNA-binding activity in this AbrB homologue requires hexamerisation []. Another family member has been isolated from the Sulfolobus solfataricus and has been identified as a homologue of bacterial repressor-like proteins. The Escherichia coli family member SohA or Prl1F appears to be bifunctional and is able to regulate its own expression as well as relieve the export block imposed by high-level synthesis of beta-galactosidase hybrid proteins [].; PDB: 2L66_A 2GLW_A 3TND_D 2W1T_B 2RO5_B 2FY9_A 2RO3_B 1UB4_C 3ZVK_G 1YFB_B ....
Probab=21.60 E-value=48 Score=21.33 Aligned_cols=33 Identities=15% Similarity=0.248 Sum_probs=23.0
Q ss_pred EecCCCCCccCCCCCCCccccccCeeeeeCCEEEEEecCC
Q 026789 26 VVGDALGWIVPPNGPATYSNWAANQTFTVGDTLVFNFAAG 65 (233)
Q Consensus 26 ~VGg~~GW~~~~~~~~~Y~~Wa~~~~f~vGD~L~F~y~~~ 65 (233)
.||.+.+=++| ..|.....++.||.|.|.+..+
T Consensus 2 kvg~s~~v~iP-------k~~~~~l~l~~Gd~v~i~~~~~ 34 (47)
T PF04014_consen 2 KVGNSGQVTIP-------KEIREKLGLKPGDEVEIEVEGD 34 (47)
T ss_dssp EETTCSEEEE--------HHHHHHTTSSTTTEEEEEEETT
T ss_pred EECCCceEECC-------HHHHHHcCCCCCCEEEEEEeCC
Confidence 45555555554 3566667789999999999864
No 138
>MTH00008 COX2 cytochrome c oxidase subunit II; Validated
Probab=21.50 E-value=90 Score=27.27 Aligned_cols=30 Identities=23% Similarity=0.401 Sum_probs=23.4
Q ss_pred eEEeccCCCeeEecCCCCCCCCC---CeeeEEecC
Q 026789 95 SVTLTASGPHYFICSFPGHCLGG---QKLAINVSA 126 (233)
Q Consensus 95 ~v~l~~~G~~yFic~~~~hC~~G---mk~~I~V~~ 126 (233)
.++.+++|.||..|+ .-|..| |.+.|.|.+
T Consensus 183 ~~~~~~~G~~~g~Cs--e~CG~~Hs~M~~~v~vv~ 215 (228)
T MTH00008 183 GFTITRPGVFYGQCS--EICGANHSFMPIVLEAVD 215 (228)
T ss_pred EEEeCCCEEEEEECh--hhcCcCccCceeEEEEEC
Confidence 456689999999999 578765 888887654
No 139
>TIGR03390 ascorbOXfungal L-ascorbate oxidase, fungal type. This model describes a family of fungal ascorbate oxidases, within a larger family of multicopper oxidases that also includes plant ascorbate oxidases (TIGR03388), plant laccases and laccase-like proteins (TIGR03389), and related proteins. The member from Acremonium sp. HI-25 is characterized.
Probab=20.84 E-value=2.9e+02 Score=27.21 Aligned_cols=81 Identities=11% Similarity=0.071 Sum_probs=0.0
Q ss_pred eeeeeCCEEEEEecCC---------CceEEEEcCCCCCc--CCCCCCCCcCCCCCceEEec--cCCCeeEecCCCCCCCC
Q 026789 50 QTFTVGDTLVFNFAAG---------NHDVTRVTQSSFNA--CNTTSPLSRTTNSPASVTLT--ASGPHYFICSFPGHCLG 116 (233)
Q Consensus 50 ~~f~vGD~L~F~y~~~---------~H~V~~V~~~~y~~--C~~~~~~~~~~~G~~~v~l~--~~G~~yFic~~~~hC~~ 116 (233)
++++.||.|+.++.+. -|.+.+-.....|. =...-+|.-..+-..+|+++ ..|++||-|-...+-..
T Consensus 41 I~~~~GD~v~V~v~N~L~~~~ttiHwHGi~~~~~~~~DGvp~vTQcpI~PG~sf~Y~f~~~~~q~GT~WYHsH~~~Q~~~ 120 (538)
T TIGR03390 41 IRLQEGQTTWIRVYNDIPDNNVTMHWHGLTQRTAPFSDGTPLASQWPIPPGHFFDYEIKPEPGDAGSYFYHSHVGFQAVT 120 (538)
T ss_pred EEEeCCCEEEEEEEECCCCCCceEECCCCCCCCCCCCCCCcccccCCCCCCCcEEEEEEecCCCCeeeEEecCCchhhhc
Q ss_pred CCeeeEEecCCCCCC
Q 026789 117 GQKLAINVSARGSSP 131 (233)
Q Consensus 117 Gmk~~I~V~~~~a~P 131 (233)
|...|.|......+
T Consensus 121 -l~G~lIV~~~~~~~ 134 (538)
T TIGR03390 121 -AFGPLIVEDCEPPP 134 (538)
T ss_pred -ceeEEEEccCCccC
No 140
>PRK15396 murein lipoprotein; Provisional
Probab=20.82 E-value=93 Score=22.89 Aligned_cols=21 Identities=19% Similarity=0.457 Sum_probs=11.0
Q ss_pred Chh-HHHHHHHHH-HHHhhhccc
Q 026789 1 MFN-RFFLAAIAI-AALVQSSTA 21 (233)
Q Consensus 1 m~~-~~~~~~~~~-~~l~~~~~a 21 (233)
|.| ++++.++++ ++||.+|+.
T Consensus 1 m~~~kl~l~av~ls~~LLaGCAs 23 (78)
T PRK15396 1 MNRTKLVLGAVILGSTLLAGCSS 23 (78)
T ss_pred CchhHHHHHHHHHHHHHHHHcCC
Confidence 666 454544444 345566653
No 141
>PRK10965 multicopper oxidase; Provisional
Probab=20.39 E-value=2.9e+02 Score=27.20 Aligned_cols=78 Identities=6% Similarity=0.076 Sum_probs=45.1
Q ss_pred cCeeeeeCCEEEEEecCCC--------ceEEEEcCCCCCcCCCCCCCCcCCCCCceEEecc-CCCeeEecCC----CCCC
Q 026789 48 ANQTFTVGDTLVFNFAAGN--------HDVTRVTQSSFNACNTTSPLSRTTNSPASVTLTA-SGPHYFICSF----PGHC 114 (233)
Q Consensus 48 ~~~~f~vGD~L~F~y~~~~--------H~V~~V~~~~y~~C~~~~~~~~~~~G~~~v~l~~-~G~~yFic~~----~~hC 114 (233)
-.+.++.||.|+.++.+.- |.+.+-. ..|. ....++.-..+-...|+++. .|+|||-+-. ..+-
T Consensus 77 PtIr~~~Gd~v~v~~~N~L~~~ttiHwHGl~~~~--~~DG-~pq~~I~PG~s~~Y~f~~~q~aGT~WYH~H~~g~t~~Qv 153 (523)
T PRK10965 77 PAVRLQRGKAVTVDITNQLPEETTLHWHGLEVPG--EVDG-GPQGIIAPGGKRTVTFTVDQPAATCWFHPHQHGKTGRQV 153 (523)
T ss_pred ceEEEECCCEEEEEEEECCCCCccEEcccccCCC--ccCC-CCCCCCCCCCEEEEEeccCCCCceEEEecCCCCCcHHHH
Confidence 4577899999999987642 3333211 1221 11111211111124667764 6999998775 3455
Q ss_pred CCCCeeeEEecCCC
Q 026789 115 LGGQKLAINVSARG 128 (233)
Q Consensus 115 ~~Gmk~~I~V~~~~ 128 (233)
..|+-..+.|....
T Consensus 154 ~~GL~G~lIV~d~~ 167 (523)
T PRK10965 154 AMGLAGLVLIEDDE 167 (523)
T ss_pred hCcCeEEEEEcCcc
Confidence 57888888887654
No 142
>COG1188 Ribosome-associated heat shock protein implicated in the recycling of the 50S subunit (S4 paralog) [Translation, ribosomal structure and biogenesis]
Probab=20.12 E-value=1.1e+02 Score=23.66 Aligned_cols=22 Identities=27% Similarity=0.493 Sum_probs=17.3
Q ss_pred cCeeeeeCCEEEEEecCCCceE
Q 026789 48 ANQTFTVGDTLVFNFAAGNHDV 69 (233)
Q Consensus 48 ~~~~f~vGD~L~F~y~~~~H~V 69 (233)
.++.+++||.|.+.|....-.|
T Consensus 45 pS~~VK~GD~l~i~~~~~~~~v 66 (100)
T COG1188 45 PSKEVKVGDILTIRFGNKEFTV 66 (100)
T ss_pred cccccCCCCEEEEEeCCcEEEE
Confidence 5688999999999997644333
No 143
>PRK14891 50S ribosomal protein L24e/unknown domain fusion protein; Provisional
Probab=20.01 E-value=34 Score=27.60 Aligned_cols=41 Identities=12% Similarity=0.263 Sum_probs=25.5
Q ss_pred cCCCCCCCCcCCCCCceEEeccCCCeeEecCCCCCCCCCCeeeEE
Q 026789 79 ACNTTSPLSRTTNSPASVTLTASGPHYFICSFPGHCLGGQKLAIN 123 (233)
Q Consensus 79 ~C~~~~~~~~~~~G~~~v~l~~~G~~yFic~~~~hC~~Gmk~~I~ 123 (233)
.|.+++. .+ -.|....-+...|..|++|+ +-|.+-.++..|
T Consensus 6 ~CsFcG~-kI-yPG~G~~fVR~DGkvf~Fcs--sKC~k~f~~kRn 46 (131)
T PRK14891 6 TCDYTGE-EI-EPGTGTMFVRKDGTVLHFVD--SKCEKNYDLGRE 46 (131)
T ss_pred eecCcCC-cc-cCCCCcEEEecCCCEEEEec--HHHHHHHHccCC
Confidence 5777642 22 23445555566799999998 678765554444
Done!