BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 026790
(233 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3PXI|A Chain A, Structure Of Meca108:clpc
pdb|3PXI|B Chain B, Structure Of Meca108:clpc
pdb|3PXI|C Chain C, Structure Of Meca108:clpc
Length = 758
Score = 70.9 bits (172), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 43/140 (30%), Positives = 79/140 (56%), Gaps = 12/140 (8%)
Query: 84 KWSARAIRSFAMAELEARKLKYPNTGTEAFLMGILVEGTSTTAKFLRANGITLFKVREET 143
+++ RA + A+A+ EA +L + N GTE L+G++ EG AK L+A G+ K+++E
Sbjct: 5 RFTERAQKVLALAQEEALRLGHNNIGTEHILLGLVREGEGIAAKALQALGLGSEKIQKEV 64
Query: 144 LNLLGK----SDLFFFSPERPPLTEQAQRALDWAFNEKLKSGESGEITTNHLLLGIWSEK 199
+L+G+ S ++P +A++ ++ + +E K G S + T H+LLG+ E
Sbjct: 65 ESLIGRGQEMSQTIHYTP-------RAKKVIELSMDEARKLGHS-YVGTEHILLGLIREG 116
Query: 200 ESAGHKILATLGFNDEKAKE 219
E ++L LG + KA++
Sbjct: 117 EGVAARVLNNLGVSLNKARQ 136
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 40/67 (59%)
Query: 85 WSARAIRSFAMAELEARKLKYPNTGTEAFLMGILVEGTSTTAKFLRANGITLFKVREETL 144
++ RA + ++ EARKL + GTE L+G++ EG A+ L G++L K R++ L
Sbjct: 80 YTPRAKKVIELSMDEARKLGHSYVGTEHILLGLIREGEGVAARVLNNLGVSLNKARQQVL 139
Query: 145 NLLGKSD 151
LLG ++
Sbjct: 140 QLLGSNE 146
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 34/62 (54%), Gaps = 1/62 (1%)
Query: 163 TEQAQRALDWAFNEKLKSGESGEITTNHLLLGIWSEKESAGHKILATLGFNDEKAKEIAK 222
TE+AQ+ L A E L+ G + I T H+LLG+ E E K L LG EK ++ +
Sbjct: 7 TERAQKVLALAQEEALRLGHNN-IGTEHILLGLVREGEGIAAKALQALGLGSEKIQKEVE 65
Query: 223 SI 224
S+
Sbjct: 66 SL 67
>pdb|3PXG|A Chain A, Structure Of Meca121 And Clpc1-485 Complex
pdb|3PXG|B Chain B, Structure Of Meca121 And Clpc1-485 Complex
pdb|3PXG|C Chain C, Structure Of Meca121 And Clpc1-485 Complex
pdb|3PXG|D Chain D, Structure Of Meca121 And Clpc1-485 Complex
pdb|3PXG|E Chain E, Structure Of Meca121 And Clpc1-485 Complex
pdb|3PXG|F Chain F, Structure Of Meca121 And Clpc1-485 Complex
Length = 468
Score = 70.9 bits (172), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 43/140 (30%), Positives = 79/140 (56%), Gaps = 12/140 (8%)
Query: 84 KWSARAIRSFAMAELEARKLKYPNTGTEAFLMGILVEGTSTTAKFLRANGITLFKVREET 143
+++ RA + A+A+ EA +L + N GTE L+G++ EG AK L+A G+ K+++E
Sbjct: 5 RFTERAQKVLALAQEEALRLGHNNIGTEHILLGLVREGEGIAAKALQALGLGSEKIQKEV 64
Query: 144 LNLLGK----SDLFFFSPERPPLTEQAQRALDWAFNEKLKSGESGEITTNHLLLGIWSEK 199
+L+G+ S ++P +A++ ++ + +E K G S + T H+LLG+ E
Sbjct: 65 ESLIGRGQEMSQTIHYTP-------RAKKVIELSMDEARKLGHS-YVGTEHILLGLIREG 116
Query: 200 ESAGHKILATLGFNDEKAKE 219
E ++L LG + KA++
Sbjct: 117 EGVAARVLNNLGVSLNKARQ 136
Score = 50.1 bits (118), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 40/67 (59%)
Query: 85 WSARAIRSFAMAELEARKLKYPNTGTEAFLMGILVEGTSTTAKFLRANGITLFKVREETL 144
++ RA + ++ EARKL + GTE L+G++ EG A+ L G++L K R++ L
Sbjct: 80 YTPRAKKVIELSMDEARKLGHSYVGTEHILLGLIREGEGVAARVLNNLGVSLNKARQQVL 139
Query: 145 NLLGKSD 151
LLG ++
Sbjct: 140 QLLGSNE 146
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 34/62 (54%), Gaps = 1/62 (1%)
Query: 163 TEQAQRALDWAFNEKLKSGESGEITTNHLLLGIWSEKESAGHKILATLGFNDEKAKEIAK 222
TE+AQ+ L A E L+ G + I T H+LLG+ E E K L LG EK ++ +
Sbjct: 7 TERAQKVLALAQEEALRLGHNN-IGTEHILLGLVREGEGIAAKALQALGLGSEKIQKEVE 65
Query: 223 SI 224
S+
Sbjct: 66 SL 67
>pdb|2Y1Q|A Chain A, Crystal Structure Of Clpc N-Terminal Domain
Length = 150
Score = 70.1 bits (170), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 42/136 (30%), Positives = 78/136 (57%), Gaps = 4/136 (2%)
Query: 84 KWSARAIRSFAMAELEARKLKYPNTGTEAFLMGILVEGTSTTAKFLRANGITLFKVREET 143
+++ RA + A+A+ EA +L + N GTE L+G++ EG AK L+A G+ K+++E
Sbjct: 5 RFTERAQKVLALAQEEALRLGHNNIGTEHILLGLVREGEGIAAKALQALGLGSEKIQKEV 64
Query: 144 LNLLGKSDLFFFSPERPPLTEQAQRALDWAFNEKLKSGESGEITTNHLLLGIWSEKESAG 203
+L+G++ + P +A++ ++ + +E K G S + T H+LLG+ E E
Sbjct: 65 ESLIGRAQEMSQTIHYTP---RAKKVIELSMDEARKLGHS-YVGTEHILLGLIREGEGVA 120
Query: 204 HKILATLGFNDEKAKE 219
++L LG + KA++
Sbjct: 121 ARVLNNLGVSLNKARQ 136
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 40/67 (59%)
Query: 85 WSARAIRSFAMAELEARKLKYPNTGTEAFLMGILVEGTSTTAKFLRANGITLFKVREETL 144
++ RA + ++ EARKL + GTE L+G++ EG A+ L G++L K R++ L
Sbjct: 80 YTPRAKKVIELSMDEARKLGHSYVGTEHILLGLIREGEGVAARVLNNLGVSLNKARQQVL 139
Query: 145 NLLGKSD 151
LLG ++
Sbjct: 140 QLLGNNE 146
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 34/62 (54%), Gaps = 1/62 (1%)
Query: 163 TEQAQRALDWAFNEKLKSGESGEITTNHLLLGIWSEKESAGHKILATLGFNDEKAKEIAK 222
TE+AQ+ L A E L+ G + I T H+LLG+ E E K L LG EK ++ +
Sbjct: 7 TERAQKVLALAQEEALRLGHN-NIGTEHILLGLVREGEGIAAKALQALGLGSEKIQKEVE 65
Query: 223 SI 224
S+
Sbjct: 66 SL 67
>pdb|2Y1R|A Chain A, Structure Of Meca121 & Clpc N-Domain Complex
pdb|2Y1R|B Chain B, Structure Of Meca121 & Clpc N-Domain Complex
pdb|2Y1R|C Chain C, Structure Of Meca121 & Clpc N-Domain Complex
pdb|2Y1R|D Chain D, Structure Of Meca121 & Clpc N-Domain Complex
pdb|2Y1R|E Chain E, Structure Of Meca121 & Clpc N-Domain Complex
pdb|2Y1R|F Chain F, Structure Of Meca121 & Clpc N-Domain Complex
pdb|2Y1R|G Chain G, Structure Of Meca121 & Clpc N-Domain Complex
pdb|2Y1R|H Chain H, Structure Of Meca121 & Clpc N-Domain Complex
Length = 149
Score = 69.7 bits (169), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 43/140 (30%), Positives = 79/140 (56%), Gaps = 12/140 (8%)
Query: 84 KWSARAIRSFAMAELEARKLKYPNTGTEAFLMGILVEGTSTTAKFLRANGITLFKVREET 143
+++ RA + A+A+ EA +L + N GTE L+G++ EG AK L+A G+ K+++E
Sbjct: 5 RFTERAQKVLALAQEEALRLGHNNIGTEHILLGLVREGEGIAAKALQALGLGSEKIQKEV 64
Query: 144 LNLLGK----SDLFFFSPERPPLTEQAQRALDWAFNEKLKSGESGEITTNHLLLGIWSEK 199
+L+G+ S ++P +A++ ++ + +E K G S + T H+LLG+ E
Sbjct: 65 ESLIGRGQEMSQTIHYTP-------RAKKVIELSMDEARKLGHS-YVGTEHILLGLIREG 116
Query: 200 ESAGHKILATLGFNDEKAKE 219
E ++L LG + KA++
Sbjct: 117 EGVAARVLNNLGVSLNKARQ 136
Score = 49.3 bits (116), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 40/67 (59%)
Query: 85 WSARAIRSFAMAELEARKLKYPNTGTEAFLMGILVEGTSTTAKFLRANGITLFKVREETL 144
++ RA + ++ EARKL + GTE L+G++ EG A+ L G++L K R++ L
Sbjct: 80 YTPRAKKVIELSMDEARKLGHSYVGTEHILLGLIREGEGVAARVLNNLGVSLNKARQQVL 139
Query: 145 NLLGKSD 151
LLG ++
Sbjct: 140 QLLGSNE 146
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 34/62 (54%), Gaps = 1/62 (1%)
Query: 163 TEQAQRALDWAFNEKLKSGESGEITTNHLLLGIWSEKESAGHKILATLGFNDEKAKEIAK 222
TE+AQ+ L A E L+ G + I T H+LLG+ E E K L LG EK ++ +
Sbjct: 7 TERAQKVLALAQEEALRLGHN-NIGTEHILLGLVREGEGIAAKALQALGLGSEKIQKEVE 65
Query: 223 SI 224
S+
Sbjct: 66 SL 67
>pdb|2K77|A Chain A, Nmr Solution Structure Of The Bacillus Subtilis Clpc N-
Domain
Length = 146
Score = 69.7 bits (169), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 43/140 (30%), Positives = 79/140 (56%), Gaps = 12/140 (8%)
Query: 84 KWSARAIRSFAMAELEARKLKYPNTGTEAFLMGILVEGTSTTAKFLRANGITLFKVREET 143
+++ RA + A+A+ EA +L + N GTE L+G++ EG AK L+A G+ K+++E
Sbjct: 6 RFTERAQKVLALAQEEALRLGHNNIGTEHILLGLVREGEGIAAKALQALGLGSEKIQKEV 65
Query: 144 LNLLGK----SDLFFFSPERPPLTEQAQRALDWAFNEKLKSGESGEITTNHLLLGIWSEK 199
+L+G+ S ++P +A++ ++ + +E K G S + T H+LLG+ E
Sbjct: 66 ESLIGRGQEMSQTIHYTP-------RAKKVIELSMDEARKLGHS-YVGTEHILLGLIREG 117
Query: 200 ESAGHKILATLGFNDEKAKE 219
E ++L LG + KA++
Sbjct: 118 EGVAARVLNNLGVSLNKARQ 137
Score = 48.5 bits (114), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 24/64 (37%), Positives = 38/64 (59%)
Query: 85 WSARAIRSFAMAELEARKLKYPNTGTEAFLMGILVEGTSTTAKFLRANGITLFKVREETL 144
++ RA + ++ EARKL + GTE L+G++ EG A+ L G++L K R++ L
Sbjct: 81 YTPRAKKVIELSMDEARKLGHSYVGTEHILLGLIREGEGVAARVLNNLGVSLNKARQQVL 140
Query: 145 NLLG 148
LLG
Sbjct: 141 QLLG 144
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/62 (38%), Positives = 34/62 (54%), Gaps = 1/62 (1%)
Query: 163 TEQAQRALDWAFNEKLKSGESGEITTNHLLLGIWSEKESAGHKILATLGFNDEKAKEIAK 222
TE+AQ+ L A E L+ G + I T H+LLG+ E E K L LG EK ++ +
Sbjct: 8 TERAQKVLALAQEEALRLGHN-NIGTEHILLGLVREGEGIAAKALQALGLGSEKIQKEVE 66
Query: 223 SI 224
S+
Sbjct: 67 SL 68
>pdb|3FH2|A Chain A, The Crystal Structure Of The Probable Atp-Dependent
Protease (Heat Shock Protein) From Corynebacterium
Glutamicum
Length = 146
Score = 68.6 bits (166), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 44/138 (31%), Positives = 72/138 (52%), Gaps = 7/138 (5%)
Query: 84 KWSARAIRSFAMAELEARKLKYPNTGTEAFLMGILVEGTSTTAKFLRANGITLFKVREET 143
+++ RA R +A+ EAR L + GTE L+G++ EG AK L + GI+L VR+E
Sbjct: 6 RFTDRARRVIVLAQEEARMLNHNYIGTEHILLGLIHEGEGVAAKALESMGISLDAVRQEV 65
Query: 144 LNLLGKSDLFFFSPE--RPPLTEQAQRALDWAFNEKLKSGESGEITTNHLLLGIWSEKES 201
++G+ P P T +A++ L+ + E L+ G I T LLLG+ E E
Sbjct: 66 EEIIGQGS----QPTTGHIPFTPRAKKVLELSLREGLQMGHK-YIGTEFLLLGLIREGEG 120
Query: 202 AGHKILATLGFNDEKAKE 219
++L LG + + ++
Sbjct: 121 VAAQVLVKLGADLPRVRQ 138
Score = 35.0 bits (79), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 36/66 (54%), Gaps = 1/66 (1%)
Query: 82 IPKWSARAIRSFAMAELEARKLKYPNTGTEAFLMGILVEGTSTTAKFLRANGITLFKVRE 141
IP ++ RA + ++ E ++ + GTE L+G++ EG A+ L G L +VR+
Sbjct: 80 IP-FTPRAKKVLELSLREGLQMGHKYIGTEFLLLGLIREGEGVAAQVLVKLGADLPRVRQ 138
Query: 142 ETLNLL 147
+ + LL
Sbjct: 139 QVIQLL 144
Score = 28.5 bits (62), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 35/67 (52%), Gaps = 2/67 (2%)
Query: 163 TEQAQRALDWAFNEKLKSGESGEITTNHLLLGIWSEKESAGHKILATLGFN-DEKAKEIA 221
T++A+R + A E+ + I T H+LLG+ E E K L ++G + D +E+
Sbjct: 8 TDRARRVIVLA-QEEARMLNHNYIGTEHILLGLIHEGEGVAAKALESMGISLDAVRQEVE 66
Query: 222 KSINEDT 228
+ I + +
Sbjct: 67 EIIGQGS 73
>pdb|3FES|A Chain A, Crystal Structure Of The Atp-Dependent Clp Protease Clpc
From Clostridium Difficile
pdb|3FES|B Chain B, Crystal Structure Of The Atp-Dependent Clp Protease Clpc
From Clostridium Difficile
pdb|3FES|C Chain C, Crystal Structure Of The Atp-Dependent Clp Protease Clpc
From Clostridium Difficile
pdb|3FES|D Chain D, Crystal Structure Of The Atp-Dependent Clp Protease Clpc
From Clostridium Difficile
Length = 145
Score = 47.4 bits (111), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 41/135 (30%), Positives = 61/135 (45%), Gaps = 12/135 (8%)
Query: 84 KWSARAIRSFAMAELEARKLKYPNTGTEAFLMGILVEGTSTTAKFLRANGITLFKVREET 143
+++ RA ++ +A A+ L + G+E L+G+L E AK L G T + +
Sbjct: 7 RFTQRAKKAIDLAFESAKSLGHNIVGSEHILLGLLREEEGIAAKVLSKVGFTEAYLEGKI 66
Query: 144 LNLLGK----SDLFFFSPERPPLTEQAQRALDWAFNEKLKSGESGEITTNHLLLGIWSEK 199
++ GK S+ SP + E L F KLK+ G T H+LL I E
Sbjct: 67 VDXEGKGEEISEDIVLSPRSKQILE-----LSGXFANKLKTNYIG---TEHILLAIIQEG 118
Query: 200 ESAGHKILATLGFND 214
E +KIL G ND
Sbjct: 119 EGIANKILNYAGVND 133
Score = 38.5 bits (88), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/78 (33%), Positives = 43/78 (55%), Gaps = 12/78 (15%)
Query: 163 TEQAQRALDWAFNEKLKSGESGEITTNHLLLGIWSEKESAGHKILATLGFN--------- 213
T++A++A+D AF E KS + + H+LLG+ E+E K+L+ +GF
Sbjct: 9 TQRAKKAIDLAF-ESAKSLGHNIVGSEHILLGLLREEEGIAAKVLSKVGFTEAYLEGKIV 67
Query: 214 DEKAKEIAKSINEDTILS 231
D + K + I+ED +LS
Sbjct: 68 DXEGK--GEEISEDIVLS 83
Score = 27.7 bits (60), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 28/63 (44%), Gaps = 2/63 (3%)
Query: 73 KPETASPDKIPKWSARAIRSFAMAELEARKLKYPNTGTEAFLMGILVEGTSTTAKFLRAN 132
K E S D + S R+ + ++ A KLK GTE L+ I+ EG K L
Sbjct: 72 KGEEISEDIV--LSPRSKQILELSGXFANKLKTNYIGTEHILLAIIQEGEGIANKILNYA 129
Query: 133 GIT 135
G+
Sbjct: 130 GVN 132
>pdb|4EV4|A Chain A, Crystal Structure Of Serratia Fonticola Carbapenemase
Sfc-1 E166a Mutant With The Acylenzyme Intermediate Of
Meropenem
Length = 283
Score = 30.8 bits (68), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 26/52 (50%)
Query: 95 MAELEARKLKYPNTGTEAFLMGILVEGTSTTAKFLRANGITLFKVREETLNL 146
+AEL A L+Y + G L+ L+ G F+R+ G +F++ L L
Sbjct: 97 VAELSAATLQYSDNGAANLLLEKLIGGPEGMTSFMRSIGDNVFRLDRWALEL 148
>pdb|4EQI|A Chain A, Crystal Structure Of Serratia Fonticola Carbapenemase
Sfc-1
pdb|4EQI|B Chain B, Crystal Structure Of Serratia Fonticola Carbapenemase
Sfc-1
Length = 283
Score = 30.4 bits (67), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 26/52 (50%)
Query: 95 MAELEARKLKYPNTGTEAFLMGILVEGTSTTAKFLRANGITLFKVREETLNL 146
+AEL A L+Y + G L+ L+ G F+R+ G +F++ L L
Sbjct: 97 VAELSAATLQYSDNGAANLLLEKLIGGPEGMTSFMRSIGDNVFRLDRWELEL 148
>pdb|4EUZ|A Chain A, Crystal Structure Of Serratia Fonticola Carbapenemase
Sfc-1 S70a- Meropenem Complex
Length = 283
Score = 30.4 bits (67), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 26/52 (50%)
Query: 95 MAELEARKLKYPNTGTEAFLMGILVEGTSTTAKFLRANGITLFKVREETLNL 146
+AEL A L+Y + G L+ L+ G F+R+ G +F++ L L
Sbjct: 97 VAELSAATLQYSDNGAANLLLEKLIGGPEGMTSFMRSIGDNVFRLDRWELEL 148
>pdb|1NP7|A Chain A, Crystal Structure Analysis Of Synechocystis Sp. Pcc6803
Cryptochrome
pdb|1NP7|B Chain B, Crystal Structure Analysis Of Synechocystis Sp. Pcc6803
Cryptochrome
Length = 489
Score = 27.7 bits (60), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 18/30 (60%)
Query: 200 ESAGHKILATLGFNDEKAKEIAKSINEDTI 229
+ G+K+L T G ++ +IAK IN TI
Sbjct: 75 QKVGNKLLVTTGLPEQVIPQIAKQINAKTI 104
>pdb|1LZW|B Chain B, Structural Basis Of Clps-Mediated Switch In Clpa Substrate
Recognition
pdb|1MG9|B Chain B, The Structural Basis Of Clps-Mediated Switch In Clpa
Substrate Recognition
Length = 146
Score = 27.3 bits (59), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 32/121 (26%), Positives = 55/121 (45%), Gaps = 10/121 (8%)
Query: 92 SFAMAELEARKLKYPNTGTEAFLMGILVEGTSTTAKFLRANGITLFKVREETLNLLGKSD 151
S MA AR+ ++ E L+ +L ++ A L A + L +R+E + ++
Sbjct: 9 SLNMAFARAREHRHEFMTVEHLLLALLSNPSAREA--LEACSVDLVALRQELEAFIEQTT 66
Query: 152 LFFFSPE-----RPPLTEQAQRALDWAFNEKLKSGESGEITTNHLLLGIWSEKESAGHKI 206
+ E +P L+ QR L A SG E+T ++L+ I+SE+ES +
Sbjct: 67 PVLPASEEERDTQPTLS--FQRVLQRAVFHVQSSG-RNEVTGANVLVAIFSEQESQAAYL 123
Query: 207 L 207
L
Sbjct: 124 L 124
>pdb|1K6K|A Chain A, Crystal Structure Of Clpa, An Aaa+ Chaperone-Like
Regulator Of Clpap Protease Implication To The
Functional Difference Of Two Atpase Domains
pdb|1R6C|X Chain X, High Resolution Structure Of Clpn
pdb|1R6O|A Chain A, Atp-Dependent Clp Protease Atp-Binding Subunit ClpaATP-
Dependent Clp Protease Adaptor Protein Clps
pdb|1R6O|B Chain B, Atp-Dependent Clp Protease Atp-Binding Subunit ClpaATP-
Dependent Clp Protease Adaptor Protein Clps
pdb|1R6Q|A Chain A, Clpns With Fragments
pdb|1R6Q|B Chain B, Clpns With Fragments
Length = 143
Score = 27.3 bits (59), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 32/121 (26%), Positives = 55/121 (45%), Gaps = 10/121 (8%)
Query: 92 SFAMAELEARKLKYPNTGTEAFLMGILVEGTSTTAKFLRANGITLFKVREETLNLLGKSD 151
S MA AR+ ++ E L+ +L ++ A L A + L +R+E + ++
Sbjct: 9 SLNMAFARAREHRHEFMTVEHLLLALLSNPSAREA--LEACSVDLVALRQELEAFIEQTT 66
Query: 152 LFFFSPE-----RPPLTEQAQRALDWAFNEKLKSGESGEITTNHLLLGIWSEKESAGHKI 206
+ E +P L+ QR L A SG E+T ++L+ I+SE+ES +
Sbjct: 67 PVLPASEEERDTQPTLS--FQRVLQRAVFHVQSSGR-NEVTGANVLVAIFSEQESQAAYL 123
Query: 207 L 207
L
Sbjct: 124 L 124
>pdb|1MBU|A Chain A, Crystal Structure Analysis Of Clpsn Heterodimer
pdb|1MBU|B Chain B, Crystal Structure Analysis Of Clpsn Heterodimer
pdb|1MBV|A Chain A, Crystal Structure Analysis Of Clpsn Heterodimer Tetragonal
Form
pdb|1MBX|A Chain A, Crystal Structure Analysis Of Clpsn With Transition Metal
Ion Bound
pdb|1MBX|B Chain B, Crystal Structure Analysis Of Clpsn With Transition Metal
Ion Bound
Length = 142
Score = 27.3 bits (59), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 32/121 (26%), Positives = 55/121 (45%), Gaps = 10/121 (8%)
Query: 92 SFAMAELEARKLKYPNTGTEAFLMGILVEGTSTTAKFLRANGITLFKVREETLNLLGKSD 151
S MA AR+ ++ E L+ +L ++ A L A + L +R+E + ++
Sbjct: 9 SLNMAFARAREHRHEFMTVEHLLLALLSNPSAREA--LEACSVDLVALRQELEAFIEQTT 66
Query: 152 LFFFSPE-----RPPLTEQAQRALDWAFNEKLKSGESGEITTNHLLLGIWSEKESAGHKI 206
+ E +P L+ QR L A SG E+T ++L+ I+SE+ES +
Sbjct: 67 PVLPASEEERDTQPTLS--FQRVLQRAVFHVQSSGR-NEVTGANVLVAIFSEQESQAAYL 123
Query: 207 L 207
L
Sbjct: 124 L 124
>pdb|1KSF|X Chain X, Crystal Structure Of Clpa, An Hsp100 Chaperone And
Regulator Of Clpap Protease: Structural Basis Of
Differences In Function Of The Two Aaa+ Atpase Domains
pdb|1R6B|X Chain X, High Resolution Crystal Structure Of Clpa
Length = 758
Score = 26.9 bits (58), Expect = 9.0, Method: Compositional matrix adjust.
Identities = 31/119 (26%), Positives = 54/119 (45%), Gaps = 6/119 (5%)
Query: 92 SFAMAELEARKLKYPNTGTEAFLMGILVEGTSTTAKFLRANGITLFKVREETLNLLGKSD 151
S MA AR+ ++ E L+ +L ++ A L A + L +R+E + ++
Sbjct: 9 SLNMAFARAREHRHEFMTVEHLLLALLSNPSAREA--LEACSVDLVALRQELEAFIEQTT 66
Query: 152 LFFFSPERPPLTEQA---QRALDWAFNEKLKSGESGEITTNHLLLGIWSEKESAGHKIL 207
+ E T+ QR L A SG + E+T ++L+ I+SE+ES +L
Sbjct: 67 PVLPASEEERDTQPTLSFQRVLQRAVFHVQSSGRN-EVTGANVLVAIFSEQESQAAYLL 124
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.130 0.367
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,089,123
Number of Sequences: 62578
Number of extensions: 224734
Number of successful extensions: 541
Number of sequences better than 100.0: 17
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 505
Number of HSP's gapped (non-prelim): 31
length of query: 233
length of database: 14,973,337
effective HSP length: 96
effective length of query: 137
effective length of database: 8,965,849
effective search space: 1228321313
effective search space used: 1228321313
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 50 (23.9 bits)