Query 026790
Match_columns 233
No_of_seqs 229 out of 1654
Neff 6.7
Searched_HMMs 29240
Date Mon Mar 25 22:14:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026790.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/026790hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3fh2_A Probable ATP-dependent 100.0 1.2E-30 4.2E-35 209.3 18.7 144 80-226 2-145 (146)
2 3fes_A ATP-dependent CLP endop 100.0 1.3E-30 4.6E-35 209.0 16.3 142 81-226 4-145 (145)
3 1khy_A CLPB protein; alpha hel 100.0 4.7E-30 1.6E-34 205.0 17.7 145 81-227 2-146 (148)
4 2y1q_A CLPC N-domain, negative 100.0 8.9E-30 3E-34 204.1 16.8 143 81-227 2-144 (150)
5 1k6k_A ATP-dependent CLP prote 99.9 1E-26 3.4E-31 184.8 14.6 135 85-222 2-139 (143)
6 3pxg_A Negative regulator of g 99.9 3.1E-26 1.1E-30 215.0 17.2 144 80-227 1-144 (468)
7 3zri_A CLPB protein, CLPV; cha 99.9 9.8E-26 3.4E-30 186.4 15.5 141 80-224 20-163 (171)
8 3pxi_A Negative regulator of g 99.9 4.5E-25 1.5E-29 217.4 17.2 144 80-227 1-144 (758)
9 1r6b_X CLPA protein; AAA+, N-t 99.9 3E-21 1E-25 189.8 15.3 137 85-224 2-141 (758)
10 1qvr_A CLPB protein; coiled co 99.8 5.7E-21 1.9E-25 190.7 13.9 137 81-227 2-138 (854)
11 3fh2_A Probable ATP-dependent 99.1 3.4E-10 1.2E-14 89.9 10.1 65 84-148 81-145 (146)
12 3fes_A ATP-dependent CLP endop 99.1 2.2E-10 7.5E-15 91.0 7.5 63 161-224 7-69 (145)
13 1khy_A CLPB protein; alpha hel 99.0 6.1E-10 2.1E-14 88.0 8.6 62 161-223 5-66 (148)
14 2y1q_A CLPC N-domain, negative 99.0 7.9E-10 2.7E-14 87.6 8.1 63 161-224 5-67 (150)
15 3zri_A CLPB protein, CLPV; cha 99.0 8.1E-10 2.8E-14 90.8 8.0 61 161-222 24-84 (171)
16 1k6k_A ATP-dependent CLP prote 98.8 8.8E-09 3E-13 80.9 8.1 61 84-144 79-139 (143)
17 3pxg_A Negative regulator of g 98.6 6.2E-08 2.1E-12 90.5 7.9 66 84-149 79-144 (468)
18 3pxi_A Negative regulator of g 98.5 2.2E-07 7.4E-12 91.4 8.0 66 84-149 79-144 (758)
19 1qvr_A CLPB protein; coiled co 98.3 7.6E-07 2.6E-11 88.8 8.1 62 161-223 5-66 (854)
20 1r6b_X CLPA protein; AAA+, N-t 98.2 1.3E-06 4.4E-11 85.6 6.9 59 162-223 2-60 (758)
21 1f1e_A Histone fold protein; a 94.5 0.28 9.7E-06 39.1 9.7 108 85-198 35-147 (154)
22 2jss_A Chimera of histone H2B. 81.7 13 0.00045 30.2 10.2 110 89-200 38-174 (192)
23 2f8n_G Core histone macro-H2A. 79.3 1.4 4.8E-05 33.6 3.2 33 89-121 57-89 (120)
24 2f8n_G Core histone macro-H2A. 79.0 1.5 5.1E-05 33.4 3.3 34 166-200 57-90 (120)
25 1f66_C Histone H2A.Z; nucleoso 78.7 1.4 4.7E-05 34.0 3.0 34 166-200 63-96 (128)
26 2nqb_C Histone H2A; nucleosome 78.5 1.6 5.4E-05 33.4 3.3 34 166-200 58-91 (123)
27 1tzy_A Histone H2A-IV; histone 78.1 1.6 5.6E-05 33.6 3.3 34 166-200 60-93 (129)
28 2nqb_C Histone H2A; nucleosome 78.0 1.6 5.5E-05 33.4 3.2 33 89-121 58-90 (123)
29 1f66_C Histone H2A.Z; nucleoso 77.8 1.4 4.8E-05 34.0 2.8 33 89-121 63-95 (128)
30 1id3_C Histone H2A.1; nucleoso 77.7 1.7 5.7E-05 33.7 3.3 34 166-200 60-93 (131)
31 1tzy_A Histone H2A-IV; histone 77.3 1.7 5.9E-05 33.5 3.2 33 89-121 60-92 (129)
32 1id3_C Histone H2A.1; nucleoso 76.7 1.8 6.3E-05 33.4 3.2 40 89-130 60-99 (131)
33 2f8n_K Histone H2A type 1; nuc 73.9 2.4 8.1E-05 33.6 3.2 34 166-200 79-112 (149)
34 2f8n_K Histone H2A type 1; nuc 72.5 2.6 8.9E-05 33.3 3.2 39 89-129 79-117 (149)
35 2jss_A Chimera of histone H2B. 68.1 4.2 0.00014 33.3 3.6 33 89-121 141-173 (192)
36 1tzy_D Histone H4-VI; histone- 66.6 6.5 0.00022 28.8 4.1 36 85-120 59-94 (103)
37 2yfw_B Histone H4, H4; cell cy 65.3 7.1 0.00024 28.6 4.1 36 85-120 59-94 (103)
38 1tzy_D Histone H4-VI; histone- 64.9 6.7 0.00023 28.7 3.9 35 163-198 60-94 (103)
39 2yfw_B Histone H4, H4; cell cy 64.4 7 0.00024 28.7 3.9 35 163-198 60-94 (103)
40 1ku5_A HPHA, archaeal histon; 54.7 13 0.00045 25.0 3.7 31 164-195 38-68 (70)
41 1ku5_A HPHA, archaeal histon; 49.9 17 0.00059 24.3 3.6 32 86-117 37-68 (70)
42 1taf_B TFIID TBP associated fa 44.9 37 0.0013 23.1 4.7 34 84-117 35-68 (70)
43 1b67_A Protein (histone HMFA); 44.7 25 0.00086 23.2 3.8 29 167-196 37-65 (68)
44 1jfi_A Transcription regulator 43.5 13 0.00044 26.9 2.3 34 166-200 46-79 (98)
45 1n1j_B NF-YC; histone-like PAI 43.0 27 0.00091 25.1 4.0 34 166-200 54-87 (97)
46 1f1e_A Histone fold protein; a 42.5 26 0.00089 27.6 4.1 36 85-120 112-147 (154)
47 1b67_A Protein (histone HMFA); 42.3 26 0.00088 23.2 3.5 27 91-117 38-64 (68)
48 4g92_C HAPE; transcription fac 41.9 27 0.00092 26.1 4.0 34 166-200 76-109 (119)
49 2lf6_A Effector protein hopab1 41.3 73 0.0025 23.1 5.9 26 124-149 25-50 (101)
50 4g92_C HAPE; transcription fac 39.9 29 0.00098 26.0 3.8 33 90-122 77-109 (119)
51 3kw6_A 26S protease regulatory 39.5 39 0.0013 22.5 4.2 34 163-197 39-72 (78)
52 3kw6_A 26S protease regulatory 38.9 39 0.0013 22.5 4.1 33 87-119 40-72 (78)
53 1id3_B Histone H4; nucleosome 38.7 33 0.0011 25.0 3.9 35 163-198 59-93 (102)
54 2hue_C Histone H4; mini beta s 38.1 32 0.0011 23.9 3.7 36 162-198 40-75 (84)
55 3b0c_W CENP-W, centromere prot 37.1 51 0.0017 22.4 4.5 29 89-117 39-67 (76)
56 3b0b_C CENP-X, centromere prot 36.5 31 0.0011 24.2 3.3 28 88-115 44-71 (81)
57 2ooa_A E3 ubiquitin-protein li 35.3 24 0.00081 22.8 2.3 26 205-230 16-41 (52)
58 3tl8_B Effector protein hopab2 35.2 38 0.0013 25.2 3.6 26 124-149 42-67 (117)
59 1id3_B Histone H4; nucleosome 34.9 45 0.0015 24.2 4.1 36 85-120 58-93 (102)
60 1n1j_B NF-YC; histone-like PAI 34.7 41 0.0014 24.1 3.8 32 91-122 56-87 (97)
61 2lf3_A Effector protein hopab3 34.6 35 0.0012 25.0 3.3 26 124-149 36-61 (107)
62 2hue_C Histone H4; mini beta s 34.2 39 0.0013 23.5 3.6 36 85-120 40-75 (84)
63 2d9s_A CBL E3 ubiquitin protei 32.8 25 0.00084 22.8 2.0 26 205-230 14-39 (53)
64 1jfi_A Transcription regulator 32.1 21 0.0007 25.8 1.8 33 90-122 47-79 (98)
65 1taf_A TFIID TBP associated fa 31.9 74 0.0025 21.4 4.5 32 165-197 34-65 (68)
66 3b0c_W CENP-W, centromere prot 29.9 72 0.0025 21.6 4.3 27 169-196 42-68 (76)
67 2ly8_A Budding yeast chaperone 29.5 72 0.0025 24.0 4.5 36 163-199 78-113 (121)
68 1taf_B TFIID TBP associated fa 29.2 94 0.0032 21.0 4.7 32 163-195 37-68 (70)
69 3ksy_A SOS-1, SON of sevenless 28.8 1.6E+02 0.0055 29.7 8.4 34 89-122 138-171 (1049)
70 4dra_E Centromere protein X; D 28.2 66 0.0022 22.7 3.9 27 89-115 49-75 (84)
71 2dzn_B 26S protease regulatory 28.0 77 0.0026 21.3 4.2 35 163-198 34-68 (82)
72 3ksy_A SOS-1, SON of sevenless 27.0 65 0.0022 32.7 5.1 34 166-200 138-171 (1049)
73 2dzn_B 26S protease regulatory 26.9 80 0.0027 21.2 4.1 34 87-120 35-68 (82)
74 1n1j_A NF-YB; histone-like PAI 26.1 96 0.0033 21.7 4.5 35 84-118 27-73 (93)
75 4esf_A PADR-like transcription 25.8 77 0.0026 23.1 4.1 38 188-225 12-55 (117)
76 3b0c_T CENP-T, centromere prot 25.6 72 0.0025 23.5 3.9 35 165-200 40-74 (111)
77 1qbj_A Protein (double-strande 25.4 64 0.0022 22.2 3.4 26 201-226 28-53 (81)
78 1n1j_A NF-YB; histone-like PAI 25.3 1E+02 0.0034 21.6 4.5 37 160-197 26-74 (93)
79 3f8b_A Transcriptional regulat 24.9 83 0.0028 22.8 4.1 38 188-225 13-58 (116)
80 1oyi_A Double-stranded RNA-bin 24.6 1.4E+02 0.0047 20.8 5.0 38 188-225 18-55 (82)
81 3vlf_B 26S protease regulatory 24.3 1.1E+02 0.0038 20.9 4.5 33 87-119 38-70 (88)
82 1taf_A TFIID TBP associated fa 24.2 1.2E+02 0.0042 20.3 4.5 32 86-117 32-63 (68)
83 3b0b_C CENP-X, centromere prot 23.8 68 0.0023 22.4 3.2 23 168-191 47-69 (81)
84 3vlf_B 26S protease regulatory 23.2 1.2E+02 0.0042 20.6 4.6 36 163-199 37-72 (88)
85 1jgs_A Multiple antibiotic res 23.1 2E+02 0.0069 20.2 6.1 37 189-225 37-73 (138)
86 3b0c_T CENP-T, centromere prot 22.8 95 0.0033 22.8 4.1 37 86-122 38-74 (111)
87 1xmk_A Double-stranded RNA-spe 22.7 57 0.0019 22.6 2.6 37 190-226 15-52 (79)
88 2r44_A Uncharacterized protein 22.6 2.4E+02 0.0082 23.4 7.3 58 89-147 266-326 (331)
89 4hbl_A Transcriptional regulat 21.6 2.3E+02 0.0079 20.4 6.5 40 186-225 41-80 (149)
90 4dra_E Centromere protein X; D 21.3 1.1E+02 0.0036 21.6 3.9 24 168-192 51-74 (84)
91 3hhh_A Transcriptional regulat 20.6 1.1E+02 0.0038 22.2 4.1 38 188-225 14-57 (116)
92 2pmy_A RAS and EF-hand domain- 20.6 1.8E+02 0.0062 19.1 5.1 53 160-225 19-71 (91)
93 2rdp_A Putative transcriptiona 20.2 2.4E+02 0.0081 20.1 6.0 37 189-225 45-81 (150)
No 1
>3fh2_A Probable ATP-dependent protease (heat shock prote; struct genomics, PSI2, MCSG, protein structure initiative; 1.60A {Corynebacterium glutamicum}
Probab=99.97 E-value=1.2e-30 Score=209.34 Aligned_cols=144 Identities=30% Similarity=0.456 Sum_probs=135.0
Q ss_pred CCchhhcHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHhhcCCChHHHHHHHcCCCHHHHHHHHHHHhCCCCCCCCCCCC
Q 026790 80 DKIPKWSARAIRSFAMAELEARKLKYPNTGTEAFLMGILVEGTSTTAKFLRANGITLFKVREETLNLLGKSDLFFFSPER 159 (233)
Q Consensus 80 ~~~~rfT~~a~~vl~~A~~eA~~~~~~~I~~eHLLlaLL~e~~~~a~~iL~~~Gvd~~~lr~~l~~~L~~~~~~~~~~~~ 159 (233)
.||++||++++++|..|+++|++++|++|+|||||+||+.++++.+.++|+++|+|++.++++++..+++.+.. .+..
T Consensus 2 ~m~~~~t~~~~~~l~~A~~~A~~~~~~~i~~eHLLlaLl~~~~~~~~~iL~~~gv~~~~l~~~l~~~l~~~~~~--~~~~ 79 (146)
T 3fh2_A 2 AMFERFTDRARRVIVLAQEEARMLNHNYIGTEHILLGLIHEGEGVAAKALESMGISLDAVRQEVEEIIGQGSQP--TTGH 79 (146)
T ss_dssp GGGGGBCHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHCCSHHHHHHHHTTCCHHHHHHHHHHHHCCCSCC--CCSC
T ss_pred chhhhcCHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHhCCCChHHHHHHHcCCCHHHHHHHHHHHhccCCCC--CcCC
Confidence 36899999999999999999999999999999999999999999999999999999999999999999987753 3456
Q ss_pred CcCCHHHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHhhCCCchHHHHHHhCCCCHHHHHHHHHHhcC
Q 026790 160 PPLTEQAQRALDWAFNEKLKSGESGEITTNHLLLGIWSEKESAGHKILATLGFNDEKAKEIAKSINE 226 (233)
Q Consensus 160 ~~~S~~~~kvLe~A~~~A~~~g~~~~I~teHLLLALl~~~~~~~~~iL~~lGvd~~~l~~~i~~~~~ 226 (233)
+++|+.++++|+.|+.+|.++|+ +||++||||+||++++++.+.++|+++|||++++++.+..+.|
T Consensus 80 ~~~s~~~~~vL~~A~~~a~~~~~-~~i~~eHlLlall~~~~~~a~~iL~~~gv~~~~l~~~l~~~~g 145 (146)
T 3fh2_A 80 IPFTPRAKKVLELSLREGLQMGH-KYIGTEFLLLGLIREGEGVAAQVLVKLGADLPRVRQQVIQLLS 145 (146)
T ss_dssp CCBCHHHHHHHHHHHHHHHHTTC-SSBCHHHHHHHHHHHCSSHHHHHHHHHTCCHHHHHHHHHHHHC
T ss_pred CcCCHHHHHHHHHHHHHHHHcCC-CcCcHHHHHHHHHhCCCcHHHHHHHHcCCCHHHHHHHHHHHhc
Confidence 89999999999999999999999 9999999999999988888999999999999999999887664
No 2
>3fes_A ATP-dependent CLP endopeptidase; alpha-helical bundles, structural genomics, PSI-2, protein S initiative; HET: PG4 EPE; 1.82A {Clostridium difficile}
Probab=99.97 E-value=1.3e-30 Score=209.05 Aligned_cols=142 Identities=25% Similarity=0.315 Sum_probs=133.3
Q ss_pred CchhhcHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHhhcCCChHHHHHHHcCCCHHHHHHHHHHHhCCCCCCCCCCCCC
Q 026790 81 KIPKWSARAIRSFAMAELEARKLKYPNTGTEAFLMGILVEGTSTTAKFLRANGITLFKVREETLNLLGKSDLFFFSPERP 160 (233)
Q Consensus 81 ~~~rfT~~a~~vl~~A~~eA~~~~~~~I~~eHLLlaLL~e~~~~a~~iL~~~Gvd~~~lr~~l~~~L~~~~~~~~~~~~~ 160 (233)
+|++||++++++|..|+++|++++|++|+|||||+||+.++++.+.++|+++|+|++.++++++..+++.+. .+..+
T Consensus 4 ~~~~~T~~a~~~l~~A~~~A~~~~~~~i~~eHLLlaLl~~~~~~~~~iL~~~gvd~~~l~~~l~~~l~~~~~---~~~~~ 80 (145)
T 3fes_A 4 NFNRFTQRAKKAIDLAFESAKSLGHNIVGSEHILLGLLREEEGIAAKVLSKVGFTEAYLEGKIVDMEGKGEE---ISEDI 80 (145)
T ss_dssp CCCCBCHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHCSSHHHHHHHHHTCCHHHHHHHHHHHHCCCSC---CCSCC
T ss_pred cccccCHHHHHHHHHHHHHHHHcCCCCccHHHHHHHHHhCCCChHHHHHHHcCCCHHHHHHHHHHHHhcCCC---CCCCC
Confidence 388999999999999999999999999999999999999999999999999999999999999999998775 23568
Q ss_pred cCCHHHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHhhCCCchHHHHHHhCCCCHHHHHHHHHHhcC
Q 026790 161 PLTEQAQRALDWAFNEKLKSGESGEITTNHLLLGIWSEKESAGHKILATLGFNDEKAKEIAKSINE 226 (233)
Q Consensus 161 ~~S~~~~kvLe~A~~~A~~~g~~~~I~teHLLLALl~~~~~~~~~iL~~lGvd~~~l~~~i~~~~~ 226 (233)
++|+.++++|+.|+.+|+++|+ +||++||||+||++++++.+.++|+++|||++++++.+..+-|
T Consensus 81 ~~s~~~~~vl~~A~~~A~~~~~-~~v~~eHlLlAll~~~~~~a~~iL~~~gv~~~~l~~~i~~~~~ 145 (145)
T 3fes_A 81 VLSPRSKQILELSGMFANKLKT-NYIGTEHILLAIIQEGEGIANKILNYAGVNDRTLAQLTIDMMG 145 (145)
T ss_dssp EECHHHHHHHHHHHHHHHHTTC-SSBCHHHHHHHHHHHCCHHHHHHHHHHTCHHHHHHHHHHHTCC
T ss_pred CCCHHHHHHHHHHHHHHHHcCC-CcccHHHHHHHHHhCCCcHHHHHHHHcCCCHHHHHHHHHHHhC
Confidence 9999999999999999999999 9999999999999988888899999999999999999877643
No 3
>1khy_A CLPB protein; alpha helix, chaperone; 1.95A {Escherichia coli} SCOP: a.174.1.1
Probab=99.97 E-value=4.7e-30 Score=205.00 Aligned_cols=145 Identities=13% Similarity=0.122 Sum_probs=126.6
Q ss_pred CchhhcHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHhhcCCChHHHHHHHcCCCHHHHHHHHHHHhCCCCCCCCCCCCC
Q 026790 81 KIPKWSARAIRSFAMAELEARKLKYPNTGTEAFLMGILVEGTSTTAKFLRANGITLFKVREETLNLLGKSDLFFFSPERP 160 (233)
Q Consensus 81 ~~~rfT~~a~~vl~~A~~eA~~~~~~~I~~eHLLlaLL~e~~~~a~~iL~~~Gvd~~~lr~~l~~~L~~~~~~~~~~~~~ 160 (233)
++++||++++++|..|+++|++++|.+|+|||||++|+.++++.+.++|+++|+|++.++.+++..+.+.|...+.+..+
T Consensus 2 ~~~~~t~~~~~~l~~A~~~A~~~~~~~i~~eHlLlaLl~~~~~~~~~iL~~~g~~~~~l~~~l~~~l~~~p~~~~~~~~~ 81 (148)
T 1khy_A 2 RLDRLTNKFQLALADAQSLALGHDNQFIEPLHLMSALLNQEGGSVSPLLTSAGINAGQLRTDINQALNRLPQVEGTGGDV 81 (148)
T ss_dssp --CCBCHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHTCTTCSHHHHHHHHTCCHHHHHHHHHHHHTTSCCC-------
T ss_pred ChhhhhHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHcCCCchHHHHHHHcCCCHHHHHHHHHHHHHhCCCCCCCCCCc
Confidence 57899999999999999999999999999999999999999999999999999999999999999999877653222468
Q ss_pred cCCHHHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHhhCCCchHHHHHHhCCCCHHHHHHHHHHhcCc
Q 026790 161 PLTEQAQRALDWAFNEKLKSGESGEITTNHLLLGIWSEKESAGHKILATLGFNDEKAKEIAKSINED 227 (233)
Q Consensus 161 ~~S~~~~kvLe~A~~~A~~~g~~~~I~teHLLLALl~~~~~~~~~iL~~lGvd~~~l~~~i~~~~~~ 227 (233)
++|+.++++|+.|+.+|..+|+ +||++||||+||+ ++++.+.++|+.+|++.+.+++.+.++||.
T Consensus 82 ~~s~~~~~vl~~A~~~a~~~~~-~~i~~ehlLlall-~~~~~~~~~L~~~gi~~~~l~~~l~~~rg~ 146 (148)
T 1khy_A 82 QPSQDLVRVLNLCDKLAQKRGD-NFISSELFVLAAL-ESRGTLADILKAAGATTANITQAIEQMRGG 146 (148)
T ss_dssp CBCHHHHHHHHHHHHHHHHHTC-SSBCHHHHHHHHH-TSCHHHHHHHHHTTCCHHHHHHHHHC----
T ss_pred CcCHHHHHHHHHHHHHHHHcCC-CeecHHHHHHHHH-cCCcHHHHHHHHcCCCHHHHHHHHHHHHCC
Confidence 8999999999999999999999 9999999999999 446677899999999999999999998874
No 4
>2y1q_A CLPC N-domain, negative regulator of genetic competence CLPC/MEC; transcription, proteolysis; 1.50A {Bacillus subtilis} PDB: 2y1r_A* 2k77_A
Probab=99.97 E-value=8.9e-30 Score=204.05 Aligned_cols=143 Identities=29% Similarity=0.456 Sum_probs=130.4
Q ss_pred CchhhcHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHhhcCCChHHHHHHHcCCCHHHHHHHHHHHhCCCCCCCCCCCCC
Q 026790 81 KIPKWSARAIRSFAMAELEARKLKYPNTGTEAFLMGILVEGTSTTAKFLRANGITLFKVREETLNLLGKSDLFFFSPERP 160 (233)
Q Consensus 81 ~~~rfT~~a~~vl~~A~~eA~~~~~~~I~~eHLLlaLL~e~~~~a~~iL~~~Gvd~~~lr~~l~~~L~~~~~~~~~~~~~ 160 (233)
|+++||++++++|..|+++|+++||++|+|||||++|+.++++.+.++|+++|+|++.++++++..+++.+.. +..+
T Consensus 2 ~~~~~t~~~~~al~~A~~~A~~~~h~~i~~eHlLlaLl~~~~~~~~~iL~~~g~~~~~l~~~l~~~l~~~~~~---~~~~ 78 (150)
T 2y1q_A 2 MFGRFTERAQKVLALAQEEALRLGHNNIGTEHILLGLVREGEGIAAKALQALGLGSEKIQKEVESLIGRAQEM---SQTI 78 (150)
T ss_dssp --CCBCHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHCSSHHHHHHHHTTCCHHHHHHHHHHHHCCC--------CC
T ss_pred cchhhCHHHHHHHHHHHHHHHHcCCCCccHHHHHHHHHhCCCCHHHHHHHHcCCCHHHHHHHHHHHhccCCcc---cccC
Confidence 5789999999999999999999999999999999999999999999999999999999999999999987753 2467
Q ss_pred cCCHHHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHhhCCCchHHHHHHhCCCCHHHHHHHHHHhcCc
Q 026790 161 PLTEQAQRALDWAFNEKLKSGESGEITTNHLLLGIWSEKESAGHKILATLGFNDEKAKEIAKSINED 227 (233)
Q Consensus 161 ~~S~~~~kvLe~A~~~A~~~g~~~~I~teHLLLALl~~~~~~~~~iL~~lGvd~~~l~~~i~~~~~~ 227 (233)
+||+.++++|+.|+.+|.++|+ +||++||||+||+.++++.+.++|+.+|++.+.+++.+.+++|.
T Consensus 79 ~~s~~~~~vL~~A~~~A~~~~~-~~i~~ehlLlall~~~~~~a~~~L~~~gi~~~~l~~~i~~~~g~ 144 (150)
T 2y1q_A 79 HYTPRAKKVIELSMDEARKLGH-SYVGTEHILLGLIREGEGVAARVLNNLGVSLNKARQQVLQLLGN 144 (150)
T ss_dssp EECHHHHHHHHHHHHHHHHTTC-SSBCHHHHHHHHHHHCCSHHHHHHHHTTCCHHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHHHHHHcCC-CeecHHHHHHHHHhCCCcHHHHHHHHcCCCHHHHHHHHHHHHCC
Confidence 8999999999999999999999 99999999999999877777899999999999999999888754
No 5
>1k6k_A ATP-dependent CLP protease ATP-binding subunit CLPA; chaperone, ATPase, adaptor binding, X-RAY, structure, N-domain, hydrolase; 1.80A {Escherichia coli} SCOP: a.174.1.1 PDB: 1r6c_X 1r6o_A* 1r6q_A* 1mg9_B* 1lzw_B* 1mbx_A* 1mbv_A 1mbu_A*
Probab=99.94 E-value=1e-26 Score=184.84 Aligned_cols=135 Identities=21% Similarity=0.227 Sum_probs=122.7
Q ss_pred hcHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHhhcCCChHHHHHHHcCCCHHHHHHHHHHHhCCC-CCCC-CC-CCCCc
Q 026790 85 WSARAIRSFAMAELEARKLKYPNTGTEAFLMGILVEGTSTTAKFLRANGITLFKVREETLNLLGKS-DLFF-FS-PERPP 161 (233)
Q Consensus 85 fT~~a~~vl~~A~~eA~~~~~~~I~~eHLLlaLL~e~~~~a~~iL~~~Gvd~~~lr~~l~~~L~~~-~~~~-~~-~~~~~ 161 (233)
||++++++|..|+++|+++||++|+|||||++|+.+++ +.++|+++|+|++.++++++..+.+. |... +. ...++
T Consensus 2 ~t~~~~~~l~~A~~~A~~~~~~~i~~eHlLlaLl~~~~--~~~iL~~~g~~~~~l~~~l~~~l~~~~p~~~~~~~~~~~~ 79 (143)
T 1k6k_A 2 LNQELELSLNMAFARAREHRHEFMTVEHLLLALLSNPS--AREALEACSVDLVALRQELEAFIEQTTPVLPASEEERDTQ 79 (143)
T ss_dssp BCHHHHHHHHHHHHHHHHHTBSEECHHHHHHHHTTCHH--HHHHHHHTTCCHHHHHHHHHHHHHHHSCBCCSSCSCCSCE
T ss_pred CCHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHcCch--HHHHHHHcCCCHHHHHHHHHHHHHhcCCCCCCCCCCCCCC
Confidence 89999999999999999999999999999999998874 89999999999999999999998775 5432 11 24689
Q ss_pred CCHHHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHhhCCCchHHHHHHhCCCCHHHHHHHHH
Q 026790 162 LTEQAQRALDWAFNEKLKSGESGEITTNHLLLGIWSEKESAGHKILATLGFNDEKAKEIAK 222 (233)
Q Consensus 162 ~S~~~~kvLe~A~~~A~~~g~~~~I~teHLLLALl~~~~~~~~~iL~~lGvd~~~l~~~i~ 222 (233)
+|+.++++|+.|+.+|.++|+ +||+++|||+||++++++.+.++|+.+|++++.+++.+.
T Consensus 80 ~s~~~~~~l~~A~~~A~~~~~-~~i~~ehLLlall~~~~~~~~~iL~~~gi~~~~l~~~i~ 139 (143)
T 1k6k_A 80 PTLSFQRVLQRAVFHVQSSGR-NEVTGANVLVAIFSEQESQAAYLLRKHEVSRLDVVNFIS 139 (143)
T ss_dssp ECHHHHHHHHHHHHHHHSSSC-SCBCHHHHHHHHTTCTTSHHHHHHHHTTCCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHcCC-CccCHHHHHHHHHhCcCcHHHHHHHHcCCCHHHHHHHHH
Confidence 999999999999999999999 999999999999998877788999999999999998775
No 6
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=99.94 E-value=3.1e-26 Score=214.97 Aligned_cols=144 Identities=28% Similarity=0.440 Sum_probs=133.3
Q ss_pred CCchhhcHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHhhcCCChHHHHHHHcCCCHHHHHHHHHHHhCCCCCCCCCCCC
Q 026790 80 DKIPKWSARAIRSFAMAELEARKLKYPNTGTEAFLMGILVEGTSTTAKFLRANGITLFKVREETLNLLGKSDLFFFSPER 159 (233)
Q Consensus 80 ~~~~rfT~~a~~vl~~A~~eA~~~~~~~I~~eHLLlaLL~e~~~~a~~iL~~~Gvd~~~lr~~l~~~L~~~~~~~~~~~~ 159 (233)
+||++||++++++|..|+++|+++||++|++||||+|||.++++.+.++|+++|+|.+.++++++..++..+.. +..
T Consensus 1 mm~~~ft~~a~~al~~A~~~A~~~~h~~v~~eHLLlaLl~~~~~~~~~iL~~~gvd~~~l~~~l~~~l~~~~~~---~~~ 77 (468)
T 3pxg_A 1 MMFGRFTERAQKVLALAQEEALRLGHNNIGTEHILLGLVREGEGIAAKALQALGLGSEKIQKEVESLIGRGQEM---SQT 77 (468)
T ss_dssp --CCCBCHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHSCCSHHHHHHHHHTCCHHHHHHHHHTTSCCCCTT---CSS
T ss_pred CcchhhCHHHHHHHHHHHHHHHHcCCCcccHHHHHHHHHhccCcHHHHHHHHcCCCHHHHHHHHHHHhcccCCC---CCC
Confidence 36899999999999999999999999999999999999999999999999999999999999999998876642 335
Q ss_pred CcCCHHHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHhhCCCchHHHHHHhCCCCHHHHHHHHHHhcCc
Q 026790 160 PPLTEQAQRALDWAFNEKLKSGESGEITTNHLLLGIWSEKESAGHKILATLGFNDEKAKEIAKSINED 227 (233)
Q Consensus 160 ~~~S~~~~kvLe~A~~~A~~~g~~~~I~teHLLLALl~~~~~~~~~iL~~lGvd~~~l~~~i~~~~~~ 227 (233)
++||+.++++|+.|+.+|.++|+ +||+++|||+||+.++++.+.++|..+|++.+++++.+..+.+.
T Consensus 78 ~~~S~~~~~vL~~A~~~A~~~g~-~~I~teHLLlaLl~~~~~~a~~iL~~~gv~~~~l~~~i~~~~~~ 144 (468)
T 3pxg_A 78 IHYTPRAKKVIELSMDEARKLGH-SYVGTEHILLGLIREGEGVAARVLNNLGVSLNKARQQVLQLLGS 144 (468)
T ss_dssp CEECHHHHHHHHHHHHHHHTTTC-SSBCHHHHHHHHHHTCCSHHHHHHHHTTCCHHHHHHHHHTTCCC
T ss_pred CCCCHHHHHHHHHHHHHHHHcCC-CeecHHHHHHHHHhcccchHHHHHHHcCCCHHHHHHHHHHHhcc
Confidence 88999999999999999999999 99999999999999998999999999999999999998877653
No 7
>3zri_A CLPB protein, CLPV; chaperone, HSP100 proteins, AAA+ proteins, T6SS, secretion,; 1.80A {Vibrio cholerae} PDB: 3zrj_A
Probab=99.94 E-value=9.8e-26 Score=186.40 Aligned_cols=141 Identities=16% Similarity=0.155 Sum_probs=121.7
Q ss_pred CCchhhcHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHhhcCCChHHHHHHHcCCCHHHHHHHHHHHhCCCCCCCCCCCC
Q 026790 80 DKIPKWSARAIRSFAMAELEARKLKYPNTGTEAFLMGILVEGTSTTAKFLRANGITLFKVREETLNLLGKSDLFFFSPER 159 (233)
Q Consensus 80 ~~~~rfT~~a~~vl~~A~~eA~~~~~~~I~~eHLLlaLL~e~~~~a~~iL~~~Gvd~~~lr~~l~~~L~~~~~~~~~~~~ 159 (233)
++|++||++++++|+.|+++|+++||++|+|||||+||+.++++.+.++|+++|+|++.++++++ .+++.+.. .+..
T Consensus 20 ~~~~kfT~~a~~aL~~A~~~A~~~~h~~I~~EHLLlaLL~~~~~~a~~iL~~~gvd~~~l~~~l~-~l~~~p~~--~~~~ 96 (171)
T 3zri_A 20 TLIAKLNAQSKLALEQAASLCIERQHPEVTLEHYLDVLLDNPLSDVRLVLKQAGLEVDQVKQAIA-STYSREQV--LDTY 96 (171)
T ss_dssp HHHHHBCHHHHHHHHHHHHHHHHHTCSEECHHHHHHHHTTCTTSHHHHHHHHTTCCHHHHHHHHH-HHSCCCCC--CSSC
T ss_pred HHHHHcCHHHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHccCcHHHHHHHHcCCCHHHHHHHHH-HHhcCCCC--CCCC
Confidence 56899999999999999999999999999999999999999999999999999999999999999 99987753 2456
Q ss_pred CcCCHHHHHHHHHHHHHHH-HcCCCCCCCHHHHHHHHhhCCCchH-HHHHHh-CCCCHHHHHHHHHHh
Q 026790 160 PPLTEQAQRALDWAFNEKL-KSGESGEITTNHLLLGIWSEKESAG-HKILAT-LGFNDEKAKEIAKSI 224 (233)
Q Consensus 160 ~~~S~~~~kvLe~A~~~A~-~~g~~~~I~teHLLLALl~~~~~~~-~~iL~~-lGvd~~~l~~~i~~~ 224 (233)
+++|+.++++|+.|+.+|+ ++|+ +||++||||+||++++..+. ..+-.. ..|+.+.+.+.+..+
T Consensus 97 ~~~S~~l~~vL~~A~~~A~l~~gd-~~I~teHLLLALl~~~~~~~~~~~~~~l~~i~~~~L~~~~~~~ 163 (171)
T 3zri_A 97 PAFSPLLVELLQEAWLLSSTELEQ-AELRSGAIFLAALTRADRYLSFKLISLFEGINRENLKKHFAMI 163 (171)
T ss_dssp CEECHHHHHHHHHHHHHHHTTTCC-SSBCHHHHHHHHHHTHHHHSCHHHHHHTTTSCHHHHHHTHHHH
T ss_pred CCcCHHHHHHHHHHHHHHHHHcCC-CEEcHHHHHHHHHhChhhhHHHHhhHHHHcCCHHHHHHHHHHH
Confidence 8999999999999999999 9999 99999999999998753211 122222 357888888766443
No 8
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.93 E-value=4.5e-25 Score=217.41 Aligned_cols=144 Identities=28% Similarity=0.440 Sum_probs=134.1
Q ss_pred CCchhhcHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHhhcCCChHHHHHHHcCCCHHHHHHHHHHHhCCCCCCCCCCCC
Q 026790 80 DKIPKWSARAIRSFAMAELEARKLKYPNTGTEAFLMGILVEGTSTTAKFLRANGITLFKVREETLNLLGKSDLFFFSPER 159 (233)
Q Consensus 80 ~~~~rfT~~a~~vl~~A~~eA~~~~~~~I~~eHLLlaLL~e~~~~a~~iL~~~Gvd~~~lr~~l~~~L~~~~~~~~~~~~ 159 (233)
+||++||++++++|..|+++|+++||++|+|||||+|||.++++.+.++|+++|+|.+.++++++..+++.+.. +..
T Consensus 1 mm~~~~t~~a~~~l~~A~~~A~~~~h~~i~~eHlLlaLl~~~~~~~~~iL~~~gvd~~~l~~~l~~~l~~~~~~---~~~ 77 (758)
T 3pxi_A 1 MMFGRFTERAQKVLALAQEEALRLGHNNIGTEHILLGLVREGEGIAAKALQALGLGSEKIQKEVESLIGRGQEM---SQT 77 (758)
T ss_dssp --CCCBCHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHSCCSHHHHHHHHHTCCHHHHHHHHHTTSCCCCTT---CSS
T ss_pred CchhhhCHHHHHHHHHHHHHHHHcCCCcccHHHHHHHHHhccCcHHHHHHHHcCCCHHHHHHHHHHHhccCCCC---CCC
Confidence 37899999999999999999999999999999999999999999999999999999999999999999887653 346
Q ss_pred CcCCHHHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHhhCCCchHHHHHHhCCCCHHHHHHHHHHhcCc
Q 026790 160 PPLTEQAQRALDWAFNEKLKSGESGEITTNHLLLGIWSEKESAGHKILATLGFNDEKAKEIAKSINED 227 (233)
Q Consensus 160 ~~~S~~~~kvLe~A~~~A~~~g~~~~I~teHLLLALl~~~~~~~~~iL~~lGvd~~~l~~~i~~~~~~ 227 (233)
++||+.++++|+.|+.+|.++|+ +||++||||+||++++++.+.++|+++|++.+++++.+.++.+.
T Consensus 78 ~~~s~~~~~vl~~A~~~A~~~~~-~~I~~ehlLlall~~~~~~a~~~L~~~gv~~~~l~~~i~~~~~~ 144 (758)
T 3pxi_A 78 IHYTPRAKKVIELSMDEARKLGH-SYVGTEHILLGLIREGEGVAARVLNNLGVSLNKARQQVLQLLGS 144 (758)
T ss_dssp CEECHHHHHHHHHHHHHHHTTTC-SSBCHHHHHHHHHHTCCSHHHHHHHHTTCCHHHHHHHHHTTCCC
T ss_pred CCCCHHHHHHHHHHHHHHHHcCC-CcccHHHHHHHHHhcCCcHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 88999999999999999999999 99999999999999998999999999999999999999887754
No 9
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.86 E-value=3e-21 Score=189.80 Aligned_cols=137 Identities=21% Similarity=0.214 Sum_probs=123.8
Q ss_pred hcHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHhhcCCChHHHHHHHcCCCHHHHHHHHHHHhCC-CCCCCC--CCCCCc
Q 026790 85 WSARAIRSFAMAELEARKLKYPNTGTEAFLMGILVEGTSTTAKFLRANGITLFKVREETLNLLGK-SDLFFF--SPERPP 161 (233)
Q Consensus 85 fT~~a~~vl~~A~~eA~~~~~~~I~~eHLLlaLL~e~~~~a~~iL~~~Gvd~~~lr~~l~~~L~~-~~~~~~--~~~~~~ 161 (233)
||++++++|..|+++|++++|++|++||||+|||.++ .+.++|+++|+|.+.++++++..+++ .+...+ ....++
T Consensus 2 ~t~~a~~~l~~A~~~A~~~~h~~i~~eHLLlaLl~~~--~~~~iL~~~gvd~~~l~~~l~~~l~~~~p~~~~~~~~~~~~ 79 (758)
T 1r6b_X 2 LNQELELSLNMAFARAREHRHEFMTVEHLLLALLSNP--SAREALEACSVDLVALRQELEAFIEQTTPVLPASEEERDTQ 79 (758)
T ss_dssp BCHHHHHHHHHHHHHHHHTTBSEECHHHHHHHHTTSH--HHHHHHHHTTCCHHHHHHHHHHHHHHHSCBCCCSSSCCCCE
T ss_pred CCHHHHHHHHHHHHHHHHcCCCCccHHHHHHHHHcCc--HHHHHHHHcCCCHHHHHHHHHHHHhccCCCCCCccccCCCC
Confidence 8999999999999999999999999999999999864 58999999999999999999999876 554321 124689
Q ss_pred CCHHHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHhhCCCchHHHHHHhCCCCHHHHHHHHHHh
Q 026790 162 LTEQAQRALDWAFNEKLKSGESGEITTNHLLLGIWSEKESAGHKILATLGFNDEKAKEIAKSI 224 (233)
Q Consensus 162 ~S~~~~kvLe~A~~~A~~~g~~~~I~teHLLLALl~~~~~~~~~iL~~lGvd~~~l~~~i~~~ 224 (233)
+|+.++++|+.|+.+|+.+|+ +||+++|||+||++++++.+.++|+.+|++.+++.+.+...
T Consensus 80 ~s~~~~~vl~~A~~~a~~~~~-~~I~~ehlLlall~~~~~~a~~~L~~~gi~~~~l~~~i~~~ 141 (758)
T 1r6b_X 80 PTLSFQRVLQRAVFHVQSSGR-NEVTGANVLVAIFSEQESQAAYLLRKHEVSRLDVVNFISHG 141 (758)
T ss_dssp ECHHHHHHHHHHHHHHHHHTC-SSBCHHHHHHHHTTCTTCHHHHHHHHTTCCHHHHHHHHHTC
T ss_pred cCHHHHHHHHHHHHHHHHcCC-CEeeHHHHHHHHhccccchHHHHHHHcCCCHHHHHHHHHHh
Confidence 999999999999999999999 99999999999999888888999999999999998887654
No 10
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=99.85 E-value=5.7e-21 Score=190.70 Aligned_cols=137 Identities=16% Similarity=0.125 Sum_probs=122.2
Q ss_pred CchhhcHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHhhcCCChHHHHHHHcCCCHHHHHHHHHHHhCCCCCCCCCCCCC
Q 026790 81 KIPKWSARAIRSFAMAELEARKLKYPNTGTEAFLMGILVEGTSTTAKFLRANGITLFKVREETLNLLGKSDLFFFSPERP 160 (233)
Q Consensus 81 ~~~rfT~~a~~vl~~A~~eA~~~~~~~I~~eHLLlaLL~e~~~~a~~iL~~~Gvd~~~lr~~l~~~L~~~~~~~~~~~~~ 160 (233)
+|++||++++++|..|+++|+++||++|+|||||++||.++++.+.++|+++|+|.+.++++++..+.+.+...+.+..+
T Consensus 2 ~~~~~t~~a~~al~~A~~~A~~~~h~~i~~eHLLlaLl~~~~~~~~~iL~~~gvd~~~l~~~l~~~l~~~p~~~~~~~~~ 81 (854)
T 1qvr_A 2 NLERWTQAAREALAQAQVLAQRMKHQAIDLPHLWAVLLKDERSLAWRLLEKAGADPKALKELQERELARLPKVEGAEVGQ 81 (854)
T ss_dssp --CCSCHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHCCSSSSHHHHHHHTTSSCHHHHHHHHHHHHHTSCCCCGGGTTC
T ss_pred ChhhhCHHHHHHHHHHHHHHHHcCCCCccHHHHHHHHHhCCCcHHHHHHHHcCCCHHHHHHHHHHHHhhCCCCCCCCCCC
Confidence 57899999999999999999999999999999999999999999999999999999999999999998877643223468
Q ss_pred cCCHHHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHhhCCCchHHHHHHhCCCCHHHHHHHHHHhcCc
Q 026790 161 PLTEQAQRALDWAFNEKLKSGESGEITTNHLLLGIWSEKESAGHKILATLGFNDEKAKEIAKSINED 227 (233)
Q Consensus 161 ~~S~~~~kvLe~A~~~A~~~g~~~~I~teHLLLALl~~~~~~~~~iL~~lGvd~~~l~~~i~~~~~~ 227 (233)
++|+.++++|+.|+.+|.++|+ +||+++|||+||+.++++. ++.+.+.+.+..+++.
T Consensus 82 ~~S~~~~~vL~~A~~~a~~~g~-~~I~~ehlLlall~~~~~~---------~~~~~~~~~~~~~~~~ 138 (854)
T 1qvr_A 82 YLTSRLSGALNRAEGLMEELKD-RYVAVDTLVLALAEATPGL---------PGLEALKGALKELRGG 138 (854)
T ss_dssp EECHHHHHHHHHHHHHHHTTTC-SSCCHHHHHHHHHHHSTTS---------CCHHHHHHHHTSSCSC
T ss_pred CCCHHHHHHHHHHHHHHHHcCC-cEeeHHHHHHHHHhccccc---------CCHHHHHHHHHHhccc
Confidence 9999999999999999999999 9999999999999876531 8888888888777653
No 11
>3fh2_A Probable ATP-dependent protease (heat shock prote; struct genomics, PSI2, MCSG, protein structure initiative; 1.60A {Corynebacterium glutamicum}
Probab=99.12 E-value=3.4e-10 Score=89.94 Aligned_cols=65 Identities=28% Similarity=0.452 Sum_probs=62.3
Q ss_pred hhcHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHhhcCCChHHHHHHHcCCCHHHHHHHHHHHhC
Q 026790 84 KWSARAIRSFAMAELEARKLKYPNTGTEAFLMGILVEGTSTTAKFLRANGITLFKVREETLNLLG 148 (233)
Q Consensus 84 rfT~~a~~vl~~A~~eA~~~~~~~I~~eHLLlaLL~e~~~~a~~iL~~~Gvd~~~lr~~l~~~L~ 148 (233)
.||+++.++|+.|..+|+++|+.+|++||||++|+.++++.+.++|+++|||.+.+++++...++
T Consensus 81 ~~s~~~~~vL~~A~~~a~~~~~~~i~~eHlLlall~~~~~~a~~iL~~~gv~~~~l~~~l~~~~g 145 (146)
T 3fh2_A 81 PFTPRAKKVLELSLREGLQMGHKYIGTEFLLLGLIREGEGVAAQVLVKLGADLPRVRQQVIQLLS 145 (146)
T ss_dssp CBCHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHCSSHHHHHHHHHTCCHHHHHHHHHHHHC
T ss_pred cCCHHHHHHHHHHHHHHHHcCCCcCcHHHHHHHHHhCCCcHHHHHHHHcCCCHHHHHHHHHHHhc
Confidence 58999999999999999999999999999999999999899999999999999999999988764
No 12
>3fes_A ATP-dependent CLP endopeptidase; alpha-helical bundles, structural genomics, PSI-2, protein S initiative; HET: PG4 EPE; 1.82A {Clostridium difficile}
Probab=99.08 E-value=2.2e-10 Score=91.03 Aligned_cols=63 Identities=27% Similarity=0.510 Sum_probs=59.4
Q ss_pred cCCHHHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHhhCCCchHHHHHHhCCCCHHHHHHHHHHh
Q 026790 161 PLTEQAQRALDWAFNEKLKSGESGEITTNHLLLGIWSEKESAGHKILATLGFNDEKAKEIAKSI 224 (233)
Q Consensus 161 ~~S~~~~kvLe~A~~~A~~~g~~~~I~teHLLLALl~~~~~~~~~iL~~lGvd~~~l~~~i~~~ 224 (233)
.||+.++++|+.|..+|.++|| .||++||||+||++++++.+.++|+++|+|.+.+++.+...
T Consensus 7 ~~T~~a~~~l~~A~~~A~~~~~-~~i~~eHLLlaLl~~~~~~~~~iL~~~gvd~~~l~~~l~~~ 69 (145)
T 3fes_A 7 RFTQRAKKAIDLAFESAKSLGH-NIVGSEHILLGLLREEEGIAAKVLSKVGFTEAYLEGKIVDM 69 (145)
T ss_dssp CBCHHHHHHHHHHHHHHHHTTC-SEECHHHHHHHHHHHCSSHHHHHHHHHTCCHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHHHcCC-CCccHHHHHHHHHhCCCChHHHHHHHcCCCHHHHHHHHHHH
Confidence 5999999999999999999999 99999999999999988999999999999999999877653
No 13
>1khy_A CLPB protein; alpha helix, chaperone; 1.95A {Escherichia coli} SCOP: a.174.1.1
Probab=99.04 E-value=6.1e-10 Score=87.95 Aligned_cols=62 Identities=21% Similarity=0.192 Sum_probs=58.7
Q ss_pred cCCHHHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHhhCCCchHHHHHHhCCCCHHHHHHHHHH
Q 026790 161 PLTEQAQRALDWAFNEKLKSGESGEITTNHLLLGIWSEKESAGHKILATLGFNDEKAKEIAKS 223 (233)
Q Consensus 161 ~~S~~~~kvLe~A~~~A~~~g~~~~I~teHLLLALl~~~~~~~~~iL~~lGvd~~~l~~~i~~ 223 (233)
.||+.++++|+.|..+|.++|| .||++||||+||++++++.+.++|+++|+|.+.+++.+..
T Consensus 5 ~~t~~~~~~l~~A~~~A~~~~~-~~i~~eHlLlaLl~~~~~~~~~iL~~~g~~~~~l~~~l~~ 66 (148)
T 1khy_A 5 RLTNKFQLALADAQSLALGHDN-QFIEPLHLMSALLNQEGGSVSPLLTSAGINAGQLRTDINQ 66 (148)
T ss_dssp CBCHHHHHHHHHHHHHHHHTTC-SSBCHHHHHHHHHTCTTCSHHHHHHHHTCCHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHcCC-CccCHHHHHHHHHcCCCchHHHHHHHcCCCHHHHHHHHHH
Confidence 4899999999999999999999 9999999999999999899999999999999999987755
No 14
>2y1q_A CLPC N-domain, negative regulator of genetic competence CLPC/MEC; transcription, proteolysis; 1.50A {Bacillus subtilis} PDB: 2y1r_A* 2k77_A
Probab=99.01 E-value=7.9e-10 Score=87.59 Aligned_cols=63 Identities=38% Similarity=0.552 Sum_probs=59.1
Q ss_pred cCCHHHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHhhCCCchHHHHHHhCCCCHHHHHHHHHHh
Q 026790 161 PLTEQAQRALDWAFNEKLKSGESGEITTNHLLLGIWSEKESAGHKILATLGFNDEKAKEIAKSI 224 (233)
Q Consensus 161 ~~S~~~~kvLe~A~~~A~~~g~~~~I~teHLLLALl~~~~~~~~~iL~~lGvd~~~l~~~i~~~ 224 (233)
.||+.++++|+.|..+|.++|| .||++||||+||++++++.+.++|+++|+|.+.+++.+...
T Consensus 5 ~~t~~~~~al~~A~~~A~~~~h-~~i~~eHlLlaLl~~~~~~~~~iL~~~g~~~~~l~~~l~~~ 67 (150)
T 2y1q_A 5 RFTERAQKVLALAQEEALRLGH-NNIGTEHILLGLVREGEGIAAKALQALGLGSEKIQKEVESL 67 (150)
T ss_dssp CBCHHHHHHHHHHHHHHHHTTC-SEECHHHHHHHHHHHCSSHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred hhCHHHHHHHHHHHHHHHHcCC-CCccHHHHHHHHHhCCCCHHHHHHHHcCCCHHHHHHHHHHH
Confidence 4899999999999999999999 99999999999999988999999999999999999877653
No 15
>3zri_A CLPB protein, CLPV; chaperone, HSP100 proteins, AAA+ proteins, T6SS, secretion,; 1.80A {Vibrio cholerae} PDB: 3zrj_A
Probab=99.00 E-value=8.1e-10 Score=90.80 Aligned_cols=61 Identities=21% Similarity=0.212 Sum_probs=58.3
Q ss_pred cCCHHHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHhhCCCchHHHHHHhCCCCHHHHHHHHH
Q 026790 161 PLTEQAQRALDWAFNEKLKSGESGEITTNHLLLGIWSEKESAGHKILATLGFNDEKAKEIAK 222 (233)
Q Consensus 161 ~~S~~~~kvLe~A~~~A~~~g~~~~I~teHLLLALl~~~~~~~~~iL~~lGvd~~~l~~~i~ 222 (233)
.||+.++++|+.|..+|.++|| .||++||||+||++++++.+.++|+++|+|.+.+++.+.
T Consensus 24 kfT~~a~~aL~~A~~~A~~~~h-~~I~~EHLLlaLL~~~~~~a~~iL~~~gvd~~~l~~~l~ 84 (171)
T 3zri_A 24 KLNAQSKLALEQAASLCIERQH-PEVTLEHYLDVLLDNPLSDVRLVLKQAGLEVDQVKQAIA 84 (171)
T ss_dssp HBCHHHHHHHHHHHHHHHHHTC-SEECHHHHHHHHTTCTTSHHHHHHHHTTCCHHHHHHHHH
T ss_pred HcCHHHHHHHHHHHHHHHHcCC-CcccHHHHHHHHHHccCcHHHHHHHHcCCCHHHHHHHHH
Confidence 3899999999999999999999 999999999999999999999999999999999998776
No 16
>1k6k_A ATP-dependent CLP protease ATP-binding subunit CLPA; chaperone, ATPase, adaptor binding, X-RAY, structure, N-domain, hydrolase; 1.80A {Escherichia coli} SCOP: a.174.1.1 PDB: 1r6c_X 1r6o_A* 1r6q_A* 1mg9_B* 1lzw_B* 1mbx_A* 1mbv_A 1mbu_A*
Probab=98.83 E-value=8.8e-09 Score=80.85 Aligned_cols=61 Identities=16% Similarity=0.119 Sum_probs=57.9
Q ss_pred hhcHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHhhcCCChHHHHHHHcCCCHHHHHHHHH
Q 026790 84 KWSARAIRSFAMAELEARKLKYPNTGTEAFLMGILVEGTSTTAKFLRANGITLFKVREETL 144 (233)
Q Consensus 84 rfT~~a~~vl~~A~~eA~~~~~~~I~~eHLLlaLL~e~~~~a~~iL~~~Gvd~~~lr~~l~ 144 (233)
.||+++.++|..|..+|+.+|+.+|+++|||+||+.++++.+.++|+.+|++.+.+++.+.
T Consensus 79 ~~s~~~~~~l~~A~~~A~~~~~~~i~~ehLLlall~~~~~~~~~iL~~~gi~~~~l~~~i~ 139 (143)
T 1k6k_A 79 QPTLSFQRVLQRAVFHVQSSGRNEVTGANVLVAIFSEQESQAAYLLRKHEVSRLDVVNFIS 139 (143)
T ss_dssp EECHHHHHHHHHHHHHHHSSSCSCBCHHHHHHHHTTCTTSHHHHHHHHTTCCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHhCcCcHHHHHHHHcCCCHHHHHHHHH
Confidence 6899999999999999999999999999999999998888789999999999999998774
No 17
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=98.61 E-value=6.2e-08 Score=90.52 Aligned_cols=66 Identities=36% Similarity=0.585 Sum_probs=62.5
Q ss_pred hhcHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHhhcCCChHHHHHHHcCCCHHHHHHHHHHHhCC
Q 026790 84 KWSARAIRSFAMAELEARKLKYPNTGTEAFLMGILVEGTSTTAKFLRANGITLFKVREETLNLLGK 149 (233)
Q Consensus 84 rfT~~a~~vl~~A~~eA~~~~~~~I~~eHLLlaLL~e~~~~a~~iL~~~Gvd~~~lr~~l~~~L~~ 149 (233)
.||+++.++|+.|..+|+++|+.+|+++|||+||+.++++.+.++|..+|++.+.+++.+...++.
T Consensus 79 ~~S~~~~~vL~~A~~~A~~~g~~~I~teHLLlaLl~~~~~~a~~iL~~~gv~~~~l~~~i~~~~~~ 144 (468)
T 3pxg_A 79 HYTPRAKKVIELSMDEARKLGHSYVGTEHILLGLIREGEGVAARVLNNLGVSLNKARQQVLQLLGS 144 (468)
T ss_dssp EECHHHHHHHHHHHHHHHTTTCSSBCHHHHHHHHHHTCCSHHHHHHHHTTCCHHHHHHHHHTTCCC
T ss_pred CCCHHHHHHHHHHHHHHHHcCCCeecHHHHHHHHHhcccchHHHHHHHcCCCHHHHHHHHHHHhcc
Confidence 599999999999999999999999999999999999999999999999999999999999876653
No 18
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=98.48 E-value=2.2e-07 Score=91.39 Aligned_cols=66 Identities=36% Similarity=0.585 Sum_probs=62.7
Q ss_pred hhcHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHhhcCCChHHHHHHHcCCCHHHHHHHHHHHhCC
Q 026790 84 KWSARAIRSFAMAELEARKLKYPNTGTEAFLMGILVEGTSTTAKFLRANGITLFKVREETLNLLGK 149 (233)
Q Consensus 84 rfT~~a~~vl~~A~~eA~~~~~~~I~~eHLLlaLL~e~~~~a~~iL~~~Gvd~~~lr~~l~~~L~~ 149 (233)
.||++++++|+.|..+|+++|+.+|+++|||+||+.++++.+.++|.++|++.+.+++++...++.
T Consensus 79 ~~s~~~~~vl~~A~~~A~~~~~~~I~~ehlLlall~~~~~~a~~~L~~~gv~~~~l~~~i~~~~~~ 144 (758)
T 3pxi_A 79 HYTPRAKKVIELSMDEARKLGHSYVGTEHILLGLIREGEGVAARVLNNLGVSLNKARQQVLQLLGS 144 (758)
T ss_dssp EECHHHHHHHHHHHHHHHTTTCSSBCHHHHHHHHHHTCCSHHHHHHHHTTCCHHHHHHHHHTTCCC
T ss_pred CCCHHHHHHHHHHHHHHHHcCCCcccHHHHHHHHHhcCCcHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 599999999999999999999999999999999999999999999999999999999999876654
No 19
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=98.34 E-value=7.6e-07 Score=88.81 Aligned_cols=62 Identities=21% Similarity=0.220 Sum_probs=58.3
Q ss_pred cCCHHHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHhhCCCchHHHHHHhCCCCHHHHHHHHHH
Q 026790 161 PLTEQAQRALDWAFNEKLKSGESGEITTNHLLLGIWSEKESAGHKILATLGFNDEKAKEIAKS 223 (233)
Q Consensus 161 ~~S~~~~kvLe~A~~~A~~~g~~~~I~teHLLLALl~~~~~~~~~iL~~lGvd~~~l~~~i~~ 223 (233)
.||+.++++|+.|..+|.++|| .||++||||+||++++++.+.++|..+|+|.+.+++.+..
T Consensus 5 ~~t~~a~~al~~A~~~A~~~~h-~~i~~eHLLlaLl~~~~~~~~~iL~~~gvd~~~l~~~l~~ 66 (854)
T 1qvr_A 5 RWTQAAREALAQAQVLAQRMKH-QAIDLPHLWAVLLKDERSLAWRLLEKAGADPKALKELQER 66 (854)
T ss_dssp CSCHHHHHHHHHHHHHHHHTTC-SEECHHHHHHHHCCSSSSHHHHHHHTTSSCHHHHHHHHHH
T ss_pred hhCHHHHHHHHHHHHHHHHcCC-CCccHHHHHHHHHhCCCcHHHHHHHHcCCCHHHHHHHHHH
Confidence 4899999999999999999999 9999999999999999898899999999999999987754
No 20
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=98.23 E-value=1.3e-06 Score=85.64 Aligned_cols=59 Identities=19% Similarity=0.272 Sum_probs=53.9
Q ss_pred CCHHHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHhhCCCchHHHHHHhCCCCHHHHHHHHHH
Q 026790 162 LTEQAQRALDWAFNEKLKSGESGEITTNHLLLGIWSEKESAGHKILATLGFNDEKAKEIAKS 223 (233)
Q Consensus 162 ~S~~~~kvLe~A~~~A~~~g~~~~I~teHLLLALl~~~~~~~~~iL~~lGvd~~~l~~~i~~ 223 (233)
||+.++++|+.|..+|.++|| .||++||||+||++++ .+.++|..+|+|.+.+++.+..
T Consensus 2 ~t~~a~~~l~~A~~~A~~~~h-~~i~~eHLLlaLl~~~--~~~~iL~~~gvd~~~l~~~l~~ 60 (758)
T 1r6b_X 2 LNQELELSLNMAFARAREHRH-EFMTVEHLLLALLSNP--SAREALEACSVDLVALRQELEA 60 (758)
T ss_dssp BCHHHHHHHHHHHHHHHHTTB-SEECHHHHHHHHTTSH--HHHHHHHHTTCCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHcCC-CCccHHHHHHHHHcCc--HHHHHHHHcCCCHHHHHHHHHH
Confidence 799999999999999999999 9999999999999854 4678999999999999887654
No 21
>1f1e_A Histone fold protein; archaeal histone protein, DNA binding protein; HET: MSE; 1.37A {Methanopyrus kandleri} SCOP: a.22.1.2
Probab=94.55 E-value=0.28 Score=39.14 Aligned_cols=108 Identities=9% Similarity=-0.141 Sum_probs=65.6
Q ss_pred hcHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHhh--cCCChHHHHHHHcCCCHHHHHHHHHHHhCCCCCCCC-CCCC--
Q 026790 85 WSARAIRSFAMAELEARKLKYPNTGTEAFLMGILV--EGTSTTAKFLRANGITLFKVREETLNLLGKSDLFFF-SPER-- 159 (233)
Q Consensus 85 fT~~a~~vl~~A~~eA~~~~~~~I~~eHLLlaLL~--e~~~~a~~iL~~~Gvd~~~lr~~l~~~L~~~~~~~~-~~~~-- 159 (233)
.+.-+..+...|...|.+.|..+|+.+|+++++=. .++- .--....++...+..-+.+. +. ...+. ....
T Consensus 35 l~~f~~~i~~~A~~~a~ha~RKTv~a~DV~~a~~~lg~~~v---~d~~~l~lP~a~V~Ri~k~~-g~-~RVS~~A~~~l~ 109 (154)
T 1f1e_A 35 VPTMAEYVANAAKSVLDASGKKTLMEEHLKALADVLMVEGV---EDYDGELFGRATVRRILKRA-GI-ERASSDAVDLYN 109 (154)
T ss_dssp HHHHHHHHHHHHHHHHHTTTCSEECHHHHHHHHHHHTCTTS---TTCCSCCCCHHHHHHHHHHT-TC-CEECHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHhcccccC---CccccccCCccHHHHHHHHc-CC-ccchHHHHHHHH
Confidence 45566677788999999999999999999999922 1110 00001123344444433332 10 00000 0000
Q ss_pred CcCCHHHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHhhC
Q 026790 160 PPLTEQAQRALDWAFNEKLKSGESGEITTNHLLLGIWSE 198 (233)
Q Consensus 160 ~~~S~~~~kvLe~A~~~A~~~g~~~~I~teHLLLALl~~ 198 (233)
=.++.=+..+...|..+|...|. ..|+.+|+++|+=..
T Consensus 110 ~~le~f~~~I~~~A~~~a~ha~R-KTIt~eDV~~Al~~~ 147 (154)
T 1f1e_A 110 KLICRATEELGEKAAEYADEDGR-KTVQGEDVEKAITYS 147 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTC-SEECHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHcCC-CccCHHHHHHHHHhc
Confidence 01233456677789999999999 999999999998653
No 22
>2jss_A Chimera of histone H2B.1 and histone H2A.Z; histone/chaperone complex, intrinsically unfolded protein, chaperone/structural protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.22.1.1 a.22.1.1
Probab=81.74 E-value=13 Score=30.24 Aligned_cols=110 Identities=16% Similarity=0.044 Sum_probs=66.5
Q ss_pred HHHHHHHHHHHHHHcCCCCcCHHHHHHHHh-hcCCChHH-------HHHH-------------HcC--CCHHHHHHHHHH
Q 026790 89 AIRSFAMAELEARKLKYPNTGTEAFLMGIL-VEGTSTTA-------KFLR-------------ANG--ITLFKVREETLN 145 (233)
Q Consensus 89 a~~vl~~A~~eA~~~~~~~I~~eHLLlaLL-~e~~~~a~-------~iL~-------------~~G--vd~~~lr~~l~~ 145 (233)
+.++-..|+.+++..+...+++..+-.++= --|..++. +.+. +.| .....+...+.+
T Consensus 38 ~~rIa~eA~~L~~~~~r~Tit~~eIq~Avrl~lpgeLak~Av~eG~kAv~k~~~sk~~~s~s~ragl~fPv~ri~R~lk~ 117 (192)
T 2jss_A 38 FERIATEASKLAAYNKKSTISAREIQTAVRLILPGELAKHAVSEGTRAVTKYSSSTQAQSSSARAGLQFPVGRIKRYLKR 117 (192)
T ss_dssp HHHHHHHHHHHHHTTCCCSCCHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHHHHCSSSCHHHHSSCCSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhhccccccccccccCCCcCCHHHHHHHHHh
Confidence 344556666777778888999999886651 11222222 2221 122 345666666655
Q ss_pred HhCCCCCCCCCCCCCcCCH----HHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHhhCCC
Q 026790 146 LLGKSDLFFFSPERPPLTE----QAQRALDWAFNEKLKSGESGEITTNHLLLGIWSEKE 200 (233)
Q Consensus 146 ~L~~~~~~~~~~~~~~~S~----~~~kvLe~A~~~A~~~g~~~~I~teHLLLALl~~~~ 200 (233)
.-...... +....++++. -+.++|+.|.+.|...+. ..|+++||-+|+-.|++
T Consensus 118 ~~~a~~Rv-~~~A~vyLaavLEyl~~eIlelA~n~a~~~~~-~~I~p~~i~lAi~nD~e 174 (192)
T 2jss_A 118 HATGRTRV-GSKAAIYLTAVLEYLTAEVLELAGNAAKDLKV-KRITPRHLQLAIRGDDE 174 (192)
T ss_dssp TTCSSCCC-CTTTHHHHHHHHHHHHHHHHHHHHHHHHHHTC-SSCCHHHHHHHHHTSHH
T ss_pred cCcccccc-ccChHHHHHHHHHHHHHHHHHHHHHHHHhcCC-CccCHHHHHHHHhccHH
Confidence 32211111 1122233333 356889999999999999 99999999999998654
No 23
>2f8n_G Core histone macro-H2A.1; nucleosome, NCP, macroh2A, histone variant, chromatin, X- RAY structure, crystallography, structural protein/DNA complex; 2.90A {Homo sapiens} SCOP: a.22.1.1 PDB: 1u35_C
Probab=79.28 E-value=1.4 Score=33.56 Aligned_cols=33 Identities=15% Similarity=0.139 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHcCCCCcCHHHHHHHHhhcC
Q 026790 89 AIRSFAMAELEARKLKYPNTGTEAFLMGILVEG 121 (233)
Q Consensus 89 a~~vl~~A~~eA~~~~~~~I~~eHLLlaLL~e~ 121 (233)
+.++++.|-+.|+..+...|+|+|+-+++-+|.
T Consensus 57 ~aEIlelAgn~A~~~k~~rItp~hi~lAI~nDe 89 (120)
T 2f8n_G 57 TAEILELAVNAARDNKKGRVTPRHILLAVANDE 89 (120)
T ss_dssp HHHHHHHHHHHHHHTTCSEECHHHHHHHHHTSH
T ss_pred HHHHHHHHHHHHhhcCCceEcHHHHHHHHhcCH
Confidence 348889999999999999999999999997754
No 24
>2f8n_G Core histone macro-H2A.1; nucleosome, NCP, macroh2A, histone variant, chromatin, X- RAY structure, crystallography, structural protein/DNA complex; 2.90A {Homo sapiens} SCOP: a.22.1.1 PDB: 1u35_C
Probab=78.98 E-value=1.5 Score=33.40 Aligned_cols=34 Identities=26% Similarity=0.485 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCHHHHHHHHhhCCC
Q 026790 166 AQRALDWAFNEKLKSGESGEITTNHLLLGIWSEKE 200 (233)
Q Consensus 166 ~~kvLe~A~~~A~~~g~~~~I~teHLLLALl~~~~ 200 (233)
+.++|+.|.+.|...+. ..|+++||-+|+-.|++
T Consensus 57 ~aEIlelAgn~A~~~k~-~rItp~hi~lAI~nDeE 90 (120)
T 2f8n_G 57 TAEILELAVNAARDNKK-GRVTPRHILLAVANDEE 90 (120)
T ss_dssp HHHHHHHHHHHHHHTTC-SEECHHHHHHHHHTSHH
T ss_pred HHHHHHHHHHHHhhcCC-ceEcHHHHHHHHhcCHH
Confidence 45899999999999999 99999999999997654
No 25
>1f66_C Histone H2A.Z; nucleosome, chromatin, histone variant, protein DNA interaction, nucleoprotein, supercoiled DNA, complex (nucleosome core/DNA); 2.60A {Homo sapiens} SCOP: a.22.1.1
Probab=78.67 E-value=1.4 Score=34.00 Aligned_cols=34 Identities=29% Similarity=0.303 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCHHHHHHHHhhCCC
Q 026790 166 AQRALDWAFNEKLKSGESGEITTNHLLLGIWSEKE 200 (233)
Q Consensus 166 ~~kvLe~A~~~A~~~g~~~~I~teHLLLALl~~~~ 200 (233)
+.++|+.|.+.|...+. ..|+++||-+|+-.|++
T Consensus 63 ~aEIlelAgn~A~~~k~-krItprhi~lAI~nDeE 96 (128)
T 1f66_C 63 TAEVLELAGNASKDLKV-KRITPRHLQLAIRGDEE 96 (128)
T ss_dssp HHHHHHHHHHHHHTTTC-SEECHHHHHHHHHHSHH
T ss_pred HHHHHHHHHHHHHhcCC-CeEcHHHHHHHHhccHH
Confidence 45899999999999999 99999999999988754
No 26
>2nqb_C Histone H2A; nucleosome, NCP, chromatin, structural protein/DNA complex; 2.30A {Drosophila melanogaster} PDB: 2pyo_C*
Probab=78.53 E-value=1.6 Score=33.43 Aligned_cols=34 Identities=29% Similarity=0.349 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCHHHHHHHHhhCCC
Q 026790 166 AQRALDWAFNEKLKSGESGEITTNHLLLGIWSEKE 200 (233)
Q Consensus 166 ~~kvLe~A~~~A~~~g~~~~I~teHLLLALl~~~~ 200 (233)
+.++|+.|.+.|...+. ..|+++||-+|+-.|++
T Consensus 58 ~aEIlelAgn~A~~~k~-krItp~hi~lAI~nDeE 91 (123)
T 2nqb_C 58 AAEVLELAGNAARDNKK-TRIIPRHLQLAIRNDEE 91 (123)
T ss_dssp HHHHHHHHHHHHHHTTC-SEECHHHHHHHHHTSHH
T ss_pred HHHHHHHHHHHHHhcCC-ccccHHHHHHHHhccHH
Confidence 56889999999999999 99999999999997654
No 27
>1tzy_A Histone H2A-IV; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_A 1hq3_A 2aro_A 2hio_A 3c9k_A 3azg_C 3a6n_C 3an2_C 3av1_C 3av2_C 3ayw_C 3aze_C 3azf_C 3afa_C 3azh_C 3azi_C 3azj_C 3azk_C 3azl_C 3azm_C ...
Probab=78.15 E-value=1.6 Score=33.64 Aligned_cols=34 Identities=26% Similarity=0.322 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCHHHHHHHHhhCCC
Q 026790 166 AQRALDWAFNEKLKSGESGEITTNHLLLGIWSEKE 200 (233)
Q Consensus 166 ~~kvLe~A~~~A~~~g~~~~I~teHLLLALl~~~~ 200 (233)
+.++|+.|.+.|...+. ..|+++||-+|+-.|++
T Consensus 60 ~aEIlelAgn~A~~~k~-krItp~hi~lAI~nDeE 93 (129)
T 1tzy_A 60 TAEILELAGNAARDNKK-TRIIPRHLQLAIRNDEE 93 (129)
T ss_dssp HHHHHHHHHHHHHHTTC-SEECHHHHHHHHHTSHH
T ss_pred HHHHHHHHHHHHHhcCC-CeEcHHHHHHHHhccHH
Confidence 56799999999999999 99999999999987654
No 28
>2nqb_C Histone H2A; nucleosome, NCP, chromatin, structural protein/DNA complex; 2.30A {Drosophila melanogaster} PDB: 2pyo_C*
Probab=78.00 E-value=1.6 Score=33.37 Aligned_cols=33 Identities=18% Similarity=0.106 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHcCCCCcCHHHHHHHHhhcC
Q 026790 89 AIRSFAMAELEARKLKYPNTGTEAFLMGILVEG 121 (233)
Q Consensus 89 a~~vl~~A~~eA~~~~~~~I~~eHLLlaLL~e~ 121 (233)
+.++++.|-+.|+..+...|+|+|+-+++-.|.
T Consensus 58 ~aEIlelAgn~A~~~k~krItp~hi~lAI~nDe 90 (123)
T 2nqb_C 58 AAEVLELAGNAARDNKKTRIIPRHLQLAIRNDE 90 (123)
T ss_dssp HHHHHHHHHHHHHHTTCSEECHHHHHHHHHTSH
T ss_pred HHHHHHHHHHHHHhcCCccccHHHHHHHHhccH
Confidence 457889999999999999999999999997754
No 29
>1f66_C Histone H2A.Z; nucleosome, chromatin, histone variant, protein DNA interaction, nucleoprotein, supercoiled DNA, complex (nucleosome core/DNA); 2.60A {Homo sapiens} SCOP: a.22.1.1
Probab=77.83 E-value=1.4 Score=33.95 Aligned_cols=33 Identities=12% Similarity=0.152 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHHHHcCCCCcCHHHHHHHHhhcC
Q 026790 89 AIRSFAMAELEARKLKYPNTGTEAFLMGILVEG 121 (233)
Q Consensus 89 a~~vl~~A~~eA~~~~~~~I~~eHLLlaLL~e~ 121 (233)
+.++++.|-+.|+..+...|+|+|+-+++-.|+
T Consensus 63 ~aEIlelAgn~A~~~k~krItprhi~lAI~nDe 95 (128)
T 1f66_C 63 TAEVLELAGNASKDLKVKRITPRHLQLAIRGDE 95 (128)
T ss_dssp HHHHHHHHHHHHHTTTCSEECHHHHHHHHHHSH
T ss_pred HHHHHHHHHHHHHhcCCCeEcHHHHHHHHhccH
Confidence 358899999999999999999999999998764
No 30
>1id3_C Histone H2A.1; nucleosome core particle, chromatin, protein/DNA interaction, nucleoprotein, supercoiled DNA; 3.10A {Saccharomyces cerevisiae} SCOP: a.22.1.1
Probab=77.73 E-value=1.7 Score=33.65 Aligned_cols=34 Identities=29% Similarity=0.333 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCHHHHHHHHhhCCC
Q 026790 166 AQRALDWAFNEKLKSGESGEITTNHLLLGIWSEKE 200 (233)
Q Consensus 166 ~~kvLe~A~~~A~~~g~~~~I~teHLLLALl~~~~ 200 (233)
+.++|+.|.+.|...+. ..|.++||-+|+-.|++
T Consensus 60 ~aEIlelAgn~A~~~k~-krItp~hI~lAI~nDeE 93 (131)
T 1id3_C 60 AAEILELAGNAARDNKK-TRIIPRHLQLAIRNDDE 93 (131)
T ss_dssp HHHHHHHHHHHHHHTTC-SEECHHHHHHHHHTCHH
T ss_pred HHHHHHHHHHHHhhcCC-ceEcHHHHHHHHhccHH
Confidence 56899999999999999 99999999999987654
No 31
>1tzy_A Histone H2A-IV; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_A 1hq3_A 2aro_A 2hio_A 3c9k_A 3azg_C 3a6n_C 3an2_C 3av1_C 3av2_C 3ayw_C 3aze_C 3azf_C 3afa_C 3azh_C 3azi_C 3azj_C 3azk_C 3azl_C 3azm_C ...
Probab=77.27 E-value=1.7 Score=33.49 Aligned_cols=33 Identities=15% Similarity=0.080 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHcCCCCcCHHHHHHHHhhcC
Q 026790 89 AIRSFAMAELEARKLKYPNTGTEAFLMGILVEG 121 (233)
Q Consensus 89 a~~vl~~A~~eA~~~~~~~I~~eHLLlaLL~e~ 121 (233)
+.++++.|-+.|+..+...|+|+|+-+++-+|.
T Consensus 60 ~aEIlelAgn~A~~~k~krItp~hi~lAI~nDe 92 (129)
T 1tzy_A 60 TAEILELAGNAARDNKKTRIIPRHLQLAIRNDE 92 (129)
T ss_dssp HHHHHHHHHHHHHHTTCSEECHHHHHHHHHTSH
T ss_pred HHHHHHHHHHHHHhcCCCeEcHHHHHHHHhccH
Confidence 456889999999999999999999999997754
No 32
>1id3_C Histone H2A.1; nucleosome core particle, chromatin, protein/DNA interaction, nucleoprotein, supercoiled DNA; 3.10A {Saccharomyces cerevisiae} SCOP: a.22.1.1
Probab=76.65 E-value=1.8 Score=33.43 Aligned_cols=40 Identities=20% Similarity=0.143 Sum_probs=32.6
Q ss_pred HHHHHHHHHHHHHHcCCCCcCHHHHHHHHhhcCCChHHHHHH
Q 026790 89 AIRSFAMAELEARKLKYPNTGTEAFLMGILVEGTSTTAKFLR 130 (233)
Q Consensus 89 a~~vl~~A~~eA~~~~~~~I~~eHLLlaLL~e~~~~a~~iL~ 130 (233)
+.++++.|-+.|+..+...|+|+||-+++-+|. ....+|.
T Consensus 60 ~aEIlelAgn~A~~~k~krItp~hI~lAI~nDe--EL~~Ll~ 99 (131)
T 1id3_C 60 AAEILELAGNAARDNKKTRIIPRHLQLAIRNDD--ELNKLLG 99 (131)
T ss_dssp HHHHHHHHHHHHHHTTCSEECHHHHHHHHHTCH--HHHHHTT
T ss_pred HHHHHHHHHHHHhhcCCceEcHHHHHHHHhccH--HHHHHhc
Confidence 457889999999999999999999999998754 3445553
No 33
>2f8n_K Histone H2A type 1; nucleosome, NCP, macroh2A, histone variant, chromatin, X- RAY structure, crystallography, structural protein/DNA complex; 2.90A {Mus musculus} SCOP: a.22.1.1
Probab=73.88 E-value=2.4 Score=33.56 Aligned_cols=34 Identities=26% Similarity=0.322 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCHHHHHHHHhhCCC
Q 026790 166 AQRALDWAFNEKLKSGESGEITTNHLLLGIWSEKE 200 (233)
Q Consensus 166 ~~kvLe~A~~~A~~~g~~~~I~teHLLLALl~~~~ 200 (233)
+.++|+.|.+.|...+. ..|.++||-+|+-.|++
T Consensus 79 ~aEILelAgn~A~~~kr-krItprhI~lAI~nDeE 112 (149)
T 2f8n_K 79 TAEILELAGNAARDNKK-TRIIPRHLQLAIRNDEE 112 (149)
T ss_dssp HHHHHHHHHHHHHHTTC-SEECHHHHHHHHHHSHH
T ss_pred HHHHHHHHHHHHHhcCC-CcCcHHHHHHHHhccHH
Confidence 56899999999999999 99999999999998754
No 34
>2f8n_K Histone H2A type 1; nucleosome, NCP, macroh2A, histone variant, chromatin, X- RAY structure, crystallography, structural protein/DNA complex; 2.90A {Mus musculus} SCOP: a.22.1.1
Probab=72.51 E-value=2.6 Score=33.33 Aligned_cols=39 Identities=18% Similarity=0.132 Sum_probs=32.1
Q ss_pred HHHHHHHHHHHHHHcCCCCcCHHHHHHHHhhcCCChHHHHH
Q 026790 89 AIRSFAMAELEARKLKYPNTGTEAFLMGILVEGTSTTAKFL 129 (233)
Q Consensus 89 a~~vl~~A~~eA~~~~~~~I~~eHLLlaLL~e~~~~a~~iL 129 (233)
+.++++.|-+.|+..+...|+|+||-+++-.|++ ...+|
T Consensus 79 ~aEILelAgn~A~~~krkrItprhI~lAI~nDeE--L~~Ll 117 (149)
T 2f8n_K 79 TAEILELAGNAARDNKKTRIIPRHLQLAIRNDEE--LNKLL 117 (149)
T ss_dssp HHHHHHHHHHHHHHTTCSEECHHHHHHHHHHSHH--HHHHT
T ss_pred HHHHHHHHHHHHHhcCCCcCcHHHHHHHHhccHH--HHHHh
Confidence 4578899999999999999999999999987643 34444
No 35
>2jss_A Chimera of histone H2B.1 and histone H2A.Z; histone/chaperone complex, intrinsically unfolded protein, chaperone/structural protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.22.1.1 a.22.1.1
Probab=68.09 E-value=4.2 Score=33.26 Aligned_cols=33 Identities=15% Similarity=0.174 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHcCCCCcCHHHHHHHHhhcC
Q 026790 89 AIRSFAMAELEARKLKYPNTGTEAFLMGILVEG 121 (233)
Q Consensus 89 a~~vl~~A~~eA~~~~~~~I~~eHLLlaLL~e~ 121 (233)
+.++++.|-+.|+..+...|+|+|+-+++-+|+
T Consensus 141 ~~eIlelA~n~a~~~~~~~I~p~~i~lAi~nD~ 173 (192)
T 2jss_A 141 TAEVLELAGNAAKDLKVKRITPRHLQLAIRGDD 173 (192)
T ss_dssp HHHHHHHHHHHHHHHTCSSCCHHHHHHHHHTSH
T ss_pred HHHHHHHHHHHHHhcCCCccCHHHHHHHHhccH
Confidence 457888999999999999999999999997754
No 36
>1tzy_D Histone H4-VI; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1f66_B 1eqz_D 1hq3_D 1u35_B 2aro_D 2cv5_B* 2f8n_B 3nqu_B 3r45_B 3azg_B 3a6n_B 3an2_B 3av1_B 3av2_B 3ayw_B 3aze_B 3azf_B 3afa_B 3azh_B 3azk_B ...
Probab=66.65 E-value=6.5 Score=28.81 Aligned_cols=36 Identities=6% Similarity=-0.116 Sum_probs=31.8
Q ss_pred hcHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHhhc
Q 026790 85 WSARAIRSFAMAELEARKLKYPNTGTEAFLMGILVE 120 (233)
Q Consensus 85 fT~~a~~vl~~A~~eA~~~~~~~I~~eHLLlaLL~e 120 (233)
+...+.+++..|...|+..+-..|+++|+.++|=..
T Consensus 59 le~~~~~V~~dA~~~a~hakRktIt~~DV~~Alr~~ 94 (103)
T 1tzy_D 59 LKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQ 94 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHHc
Confidence 466778899999999999999999999999998654
No 37
>2yfw_B Histone H4, H4; cell cycle, kinetochore, centromere, histone chaperone, BUDD; 2.60A {Kluyveromyces lactis nrrl y-1140}
Probab=65.27 E-value=7.1 Score=28.60 Aligned_cols=36 Identities=6% Similarity=-0.116 Sum_probs=31.7
Q ss_pred hcHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHhhc
Q 026790 85 WSARAIRSFAMAELEARKLKYPNTGTEAFLMGILVE 120 (233)
Q Consensus 85 fT~~a~~vl~~A~~eA~~~~~~~I~~eHLLlaLL~e 120 (233)
....+.+++..|...|+..+-..|+++|+.++|=..
T Consensus 59 le~~~~~V~~dA~~~a~hakRktvt~~DV~~Alr~~ 94 (103)
T 2yfw_B 59 LKTFLESVIRDAVTYTEHAKRKTVTSLDVVYALKRQ 94 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCCCcCcHHHHHHHHHHc
Confidence 456778899999999999999999999999998654
No 38
>1tzy_D Histone H4-VI; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1f66_B 1eqz_D 1hq3_D 1u35_B 2aro_D 2cv5_B* 2f8n_B 3nqu_B 3r45_B 3azg_B 3a6n_B 3an2_B 3av1_B 3av2_B 3ayw_B 3aze_B 3azf_B 3afa_B 3azh_B 3azk_B ...
Probab=64.95 E-value=6.7 Score=28.72 Aligned_cols=35 Identities=6% Similarity=0.007 Sum_probs=30.3
Q ss_pred CHHHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHhhC
Q 026790 163 TEQAQRALDWAFNEKLKSGESGEITTNHLLLGIWSE 198 (233)
Q Consensus 163 S~~~~kvLe~A~~~A~~~g~~~~I~teHLLLALl~~ 198 (233)
..-+.+++++|..++...+- ..|+++||.+||=..
T Consensus 60 e~~~~~V~~dA~~~a~hakR-ktIt~~DV~~Alr~~ 94 (103)
T 1tzy_D 60 KVFLENVIRDAVTYTEHAKR-KTVTAMDVVYALKRQ 94 (103)
T ss_dssp HHHHHHHHHHHHHHHHHTTC-SEECHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHcCC-CcCCHHHHHHHHHHc
Confidence 44567899999999999999 999999999998764
No 39
>2yfw_B Histone H4, H4; cell cycle, kinetochore, centromere, histone chaperone, BUDD; 2.60A {Kluyveromyces lactis nrrl y-1140}
Probab=64.38 E-value=7 Score=28.65 Aligned_cols=35 Identities=6% Similarity=0.021 Sum_probs=30.3
Q ss_pred CHHHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHhhC
Q 026790 163 TEQAQRALDWAFNEKLKSGESGEITTNHLLLGIWSE 198 (233)
Q Consensus 163 S~~~~kvLe~A~~~A~~~g~~~~I~teHLLLALl~~ 198 (233)
..-+.+++++|..++...+- ..|+++||.+||=..
T Consensus 60 e~~~~~V~~dA~~~a~hakR-ktvt~~DV~~Alr~~ 94 (103)
T 2yfw_B 60 KTFLESVIRDAVTYTEHAKR-KTVTSLDVVYALKRQ 94 (103)
T ss_dssp HHHHHHHHHHHHHHHHHTTC-SEECHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCC-CcCcHHHHHHHHHHc
Confidence 44577889999999999999 999999999998754
No 40
>1ku5_A HPHA, archaeal histon; histone fold, DNA binding protein; 2.30A {Pyrococcus horikoshii} SCOP: a.22.1.2
Probab=54.74 E-value=13 Score=24.95 Aligned_cols=31 Identities=19% Similarity=0.173 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHHHHHHcCCCCCCCHHHHHHHH
Q 026790 164 EQAQRALDWAFNEKLKSGESGEITTNHLLLGI 195 (233)
Q Consensus 164 ~~~~kvLe~A~~~A~~~g~~~~I~teHLLLAL 195 (233)
.-+..++++|..+|...|- ..|..+++.+|+
T Consensus 38 ~~~~~v~~dA~~~a~hakR-kTI~~~DV~lA~ 68 (70)
T 1ku5_A 38 EYAIEIAKKAVEFARHAGR-KTVKVEDIKLAI 68 (70)
T ss_dssp HHHHHHHHHHHHHHHTTTC-SEECHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCC-CcCCHHHHHHHH
Confidence 3456788889999999999 999999999987
No 41
>1ku5_A HPHA, archaeal histon; histone fold, DNA binding protein; 2.30A {Pyrococcus horikoshii} SCOP: a.22.1.2
Probab=49.95 E-value=17 Score=24.34 Aligned_cols=32 Identities=22% Similarity=0.054 Sum_probs=26.7
Q ss_pred cHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHH
Q 026790 86 SARAIRSFAMAELEARKLKYPNTGTEAFLMGI 117 (233)
Q Consensus 86 T~~a~~vl~~A~~eA~~~~~~~I~~eHLLlaL 117 (233)
..-+.+++..|...|...|...|+++++.+++
T Consensus 37 ~~~~~~v~~dA~~~a~hakRkTI~~~DV~lA~ 68 (70)
T 1ku5_A 37 EEYAIEIAKKAVEFARHAGRKTVKVEDIKLAI 68 (70)
T ss_dssp HHHHHHHHHHHHHHHHTTTCSEECHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHH
Confidence 34455677788899999999999999999986
No 42
>1taf_B TFIID TBP associated factor 62; transcription initiation, histone fold, complex (TWO transcr factors); 2.00A {Drosophila melanogaster} SCOP: a.22.1.3
Probab=44.94 E-value=37 Score=23.09 Aligned_cols=34 Identities=15% Similarity=-0.001 Sum_probs=30.2
Q ss_pred hhcHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHH
Q 026790 84 KWSARAIRSFAMAELEARKLKYPNTGTEAFLMGI 117 (233)
Q Consensus 84 rfT~~a~~vl~~A~~eA~~~~~~~I~~eHLLlaL 117 (233)
...-+++++++.|...++..+...++++++=++|
T Consensus 35 dvEyr~~eI~qeA~kfmrHakRk~Lt~~DI~~Al 68 (70)
T 1taf_B 35 DVSIKLKRIVQDAAKFMNHAKRQKLSVRDIDMSL 68 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCeecHHHHHHHH
Confidence 4577889999999999999999999999987775
No 43
>1b67_A Protein (histone HMFA); DNA binding protein; 1.48A {Methanothermus fervidus} SCOP: a.22.1.2 PDB: 1hta_A 1a7w_A 1b6w_A 1bfm_A
Probab=44.70 E-value=25 Score=23.21 Aligned_cols=29 Identities=14% Similarity=0.076 Sum_probs=23.0
Q ss_pred HHHHHHHHHHHHHcCCCCCCCHHHHHHHHh
Q 026790 167 QRALDWAFNEKLKSGESGEITTNHLLLGIW 196 (233)
Q Consensus 167 ~kvLe~A~~~A~~~g~~~~I~teHLLLALl 196 (233)
..+.+.|...|...+. .-|..+|+.+|+=
T Consensus 37 ~~l~~~A~~~a~~~kR-kTI~~~Di~~A~~ 65 (68)
T 1b67_A 37 EEIASEAVKLAKHAGR-KTIKAEDIELARK 65 (68)
T ss_dssp HHHHHHHHHHHHHTTC-SEECHHHHHHHGG
T ss_pred HHHHHHHHHHHHHcCC-CccCHHHHHHHHH
Confidence 3455667777888888 8999999999974
No 44
>1jfi_A Transcription regulator NC2 alpha chain; histone, H2A/H2B, tata-DNA, transcription initiation, NC2, negative cofactor, structural genomics, PSI; 2.62A {Homo sapiens} SCOP: a.22.1.3
Probab=43.47 E-value=13 Score=26.94 Aligned_cols=34 Identities=24% Similarity=0.136 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCHHHHHHHHhhCCC
Q 026790 166 AQRALDWAFNEKLKSGESGEITTNHLLLGIWSEKE 200 (233)
Q Consensus 166 ~~kvLe~A~~~A~~~g~~~~I~teHLLLALl~~~~ 200 (233)
+..+++.|++.|+..+. ..|...||-+|+-.++.
T Consensus 46 i~el~~~A~~~a~~~kr-ktI~~~di~~av~~~e~ 79 (98)
T 1jfi_A 46 LESLLKKACQVTQSRNA-KTMTTSHLKQCIELEGD 79 (98)
T ss_dssp HHHHHHHHHHHHHTC----CBCHHHHHTTCC----
T ss_pred HHHHHHHHHHHHHHcCC-CeecHHHHHHHHhcCch
Confidence 45678889999998888 99999999999998654
No 45
>1n1j_B NF-YC; histone-like PAIR, DNA binding protein; 1.67A {Homo sapiens} SCOP: a.22.1.3
Probab=43.02 E-value=27 Score=25.07 Aligned_cols=34 Identities=9% Similarity=0.028 Sum_probs=27.8
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCHHHHHHHHhhCCC
Q 026790 166 AQRALDWAFNEKLKSGESGEITTNHLLLGIWSEKE 200 (233)
Q Consensus 166 ~~kvLe~A~~~A~~~g~~~~I~teHLLLALl~~~~ 200 (233)
...+.+.|+..|...+. ..|..+||..|+-.++.
T Consensus 54 i~~l~~~A~~~a~~~kr-ktI~~~di~~Av~~~e~ 87 (97)
T 1n1j_B 54 ITELTLRAWIHTEDNKR-RTLQRNDIAMAITKFDQ 87 (97)
T ss_dssp HHHHHHHHHHHHHHTTC-SEECHHHHHHHHTTCGG
T ss_pred HHHHHHHHHHHHHHcCC-ccCCHHHHHHHHhcCcH
Confidence 34566778889988888 89999999999987653
No 46
>1f1e_A Histone fold protein; archaeal histone protein, DNA binding protein; HET: MSE; 1.37A {Methanopyrus kandleri} SCOP: a.22.1.2
Probab=42.51 E-value=26 Score=27.62 Aligned_cols=36 Identities=11% Similarity=-0.188 Sum_probs=30.1
Q ss_pred hcHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHhhc
Q 026790 85 WSARAIRSFAMAELEARKLKYPNTGTEAFLMGILVE 120 (233)
Q Consensus 85 fT~~a~~vl~~A~~eA~~~~~~~I~~eHLLlaLL~e 120 (233)
.+.-+..+...|...|...+..+|+++|+++++=.+
T Consensus 112 le~f~~~I~~~A~~~a~ha~RKTIt~eDV~~Al~~~ 147 (154)
T 1f1e_A 112 ICRATEELGEKAAEYADEDGRKTVQGEDVEKAITYS 147 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHhc
Confidence 355566778889999999999999999999998543
No 47
>1b67_A Protein (histone HMFA); DNA binding protein; 1.48A {Methanothermus fervidus} SCOP: a.22.1.2 PDB: 1hta_A 1a7w_A 1b6w_A 1bfm_A
Probab=42.30 E-value=26 Score=23.18 Aligned_cols=27 Identities=11% Similarity=-0.074 Sum_probs=21.9
Q ss_pred HHHHHHHHHHHHcCCCCcCHHHHHHHH
Q 026790 91 RSFAMAELEARKLKYPNTGTEAFLMGI 117 (233)
Q Consensus 91 ~vl~~A~~eA~~~~~~~I~~eHLLlaL 117 (233)
.+...|...|...+..+|.++|+.+++
T Consensus 38 ~l~~~A~~~a~~~kRkTI~~~Di~~A~ 64 (68)
T 1b67_A 38 EIASEAVKLAKHAGRKTIKAEDIELAR 64 (68)
T ss_dssp HHHHHHHHHHHHTTCSEECHHHHHHHG
T ss_pred HHHHHHHHHHHHcCCCccCHHHHHHHH
Confidence 344556667899999999999999986
No 48
>4g92_C HAPE; transcription factor, nucleosome, minor groove binding, CCAA complex, histone fold motif, specific binding to the ccaat- nucleus; HET: DNA; 1.80A {Aspergillus nidulans} PDB: 4g91_C*
Probab=41.95 E-value=27 Score=26.12 Aligned_cols=34 Identities=3% Similarity=-0.040 Sum_probs=28.3
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCHHHHHHHHhhCCC
Q 026790 166 AQRALDWAFNEKLKSGESGEITTNHLLLGIWSEKE 200 (233)
Q Consensus 166 ~~kvLe~A~~~A~~~g~~~~I~teHLLLALl~~~~ 200 (233)
...+++.|+..|...+. ..|..+||..|+-.++.
T Consensus 76 i~~L~~~A~~~a~~~kr-ktI~~~di~~Av~~~e~ 109 (119)
T 4g92_C 76 ITELTMRAWIHAEDNKR-RTLQRSDIAAALSKSDM 109 (119)
T ss_dssp HHHHHHHHHHHHHHTTC-SEECHHHHHHHHTTCGG
T ss_pred HHHHHHHHHHHHHhccc-CccCHHHHHHHHhcCch
Confidence 34567788999999888 99999999999987653
No 49
>2lf6_A Effector protein hopab1; type III effector, structural genomics, PSI-biology, protein structure initiative; NMR {Pseudomonas syringae PV}
Probab=41.29 E-value=73 Score=23.08 Aligned_cols=26 Identities=12% Similarity=0.197 Sum_probs=22.0
Q ss_pred hHHHHHHHcCCCHHHHHHHHHHHhCC
Q 026790 124 TTAKFLRANGITLFKVREETLNLLGK 149 (233)
Q Consensus 124 ~a~~iL~~~Gvd~~~lr~~l~~~L~~ 149 (233)
.+-+-|.++|||.+.++.++++++-.
T Consensus 25 aaL~~L~qqGvdmerLr~Al~~~i~~ 50 (101)
T 2lf6_A 25 EALRRLTQEGVDMERLRTSLGRYIMS 50 (101)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHHHSS
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHh
Confidence 45667788899999999999998865
No 50
>4g92_C HAPE; transcription factor, nucleosome, minor groove binding, CCAA complex, histone fold motif, specific binding to the ccaat- nucleus; HET: DNA; 1.80A {Aspergillus nidulans} PDB: 4g91_C*
Probab=39.87 E-value=29 Score=25.96 Aligned_cols=33 Identities=9% Similarity=-0.084 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHcCCCCcCHHHHHHHHhhcCC
Q 026790 90 IRSFAMAELEARKLKYPNTGTEAFLMGILVEGT 122 (233)
Q Consensus 90 ~~vl~~A~~eA~~~~~~~I~~eHLLlaLL~e~~ 122 (233)
..+...|.+.|...+...|++.||..++-.++.
T Consensus 77 ~~L~~~A~~~a~~~krktI~~~di~~Av~~~e~ 109 (119)
T 4g92_C 77 TELTMRAWIHAEDNKRRTLQRSDIAAALSKSDM 109 (119)
T ss_dssp HHHHHHHHHHHHHTTCSEECHHHHHHHHTTCGG
T ss_pred HHHHHHHHHHHHhcccCccCHHHHHHHHhcCch
Confidence 345567788899999999999999999977653
No 51
>3kw6_A 26S protease regulatory subunit 8; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Homo sapiens}
Probab=39.54 E-value=39 Score=22.52 Aligned_cols=34 Identities=9% Similarity=0.001 Sum_probs=29.7
Q ss_pred CHHHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHhh
Q 026790 163 TEQAQRALDWAFNEKLKSGESGEITTNHLLLGIWS 197 (233)
Q Consensus 163 S~~~~kvLe~A~~~A~~~g~~~~I~teHLLLALl~ 197 (233)
..++..+...|...|.+.+. ..|+.+|+.-||-+
T Consensus 39 GADi~~l~~eA~~~a~~~~~-~~i~~~d~~~Al~~ 72 (78)
T 3kw6_A 39 GAEVKGVCTEAGMYALRERR-VHVTQEDFEMAVAK 72 (78)
T ss_dssp HHHHHHHHHHHHHHHHHTTC-SEECHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCC-CCCCHHHHHHHHHH
Confidence 45689999999999998888 89999999998864
No 52
>3kw6_A 26S protease regulatory subunit 8; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Homo sapiens}
Probab=38.89 E-value=39 Score=22.52 Aligned_cols=33 Identities=18% Similarity=0.104 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHhh
Q 026790 87 ARAIRSFAMAELEARKLKYPNTGTEAFLMGILV 119 (233)
Q Consensus 87 ~~a~~vl~~A~~eA~~~~~~~I~~eHLLlaLL~ 119 (233)
.+..+++..|...|.+.+...|+.+|+..++-.
T Consensus 40 ADi~~l~~eA~~~a~~~~~~~i~~~d~~~Al~~ 72 (78)
T 3kw6_A 40 AEVKGVCTEAGMYALRERRVHVTQEDFEMAVAK 72 (78)
T ss_dssp HHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Confidence 457788889999999999999999999988743
No 53
>1id3_B Histone H4; nucleosome core particle, chromatin, protein/DNA interaction, nucleoprotein, supercoiled DNA; 3.10A {Saccharomyces cerevisiae} SCOP: a.22.1.1
Probab=38.73 E-value=33 Score=24.99 Aligned_cols=35 Identities=3% Similarity=0.011 Sum_probs=29.9
Q ss_pred CHHHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHhhC
Q 026790 163 TEQAQRALDWAFNEKLKSGESGEITTNHLLLGIWSE 198 (233)
Q Consensus 163 S~~~~kvLe~A~~~A~~~g~~~~I~teHLLLALl~~ 198 (233)
..-+..+++.|..++...+- ..|+++++.+||=..
T Consensus 59 e~fi~~I~~dA~~~a~HakR-KTVt~~DV~~ALkr~ 93 (102)
T 1id3_B 59 KSFLESVIRDSVTYTEHAKR-KTVTSLDVVYALKRQ 93 (102)
T ss_dssp HHHHHHHHHHHHHHHHHTTC-SEECHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHcCC-CcCcHHHHHHHHHHc
Confidence 45567788889999999999 999999999998754
No 54
>2hue_C Histone H4; mini beta sheet, elongated beta sandwhich, DNA binding prote; 1.70A {Xenopus laevis} SCOP: a.22.1.1 PDB: 3nqj_B 1aoi_B 3kwq_B* 1hio_D 2yfv_B
Probab=38.10 E-value=32 Score=23.94 Aligned_cols=36 Identities=8% Similarity=0.044 Sum_probs=30.6
Q ss_pred CCHHHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHhhC
Q 026790 162 LTEQAQRALDWAFNEKLKSGESGEITTNHLLLGIWSE 198 (233)
Q Consensus 162 ~S~~~~kvLe~A~~~A~~~g~~~~I~teHLLLALl~~ 198 (233)
+..-+..+++.|..++...|- ..|+++++.+||=..
T Consensus 40 l~~~~~~I~~dA~~~a~ha~R-KTvt~~DV~~Alk~~ 75 (84)
T 2hue_C 40 LKVFLENVIRDAVTYTEHAKR-KTVTAMDVVYALKRQ 75 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHTTC-SEECHHHHHHHTTTT
T ss_pred HHHHHHHHHHHHHHHHHHcCC-CcCcHHHHHHHHHHc
Confidence 355677888899999999999 999999999998654
No 55
>3b0c_W CENP-W, centromere protein W; histone fold, DNA binding, DNA binding protein; HET: CIT; 2.20A {Gallus gallus} PDB: 3b0d_W* 3vh5_W 3vh6_W
Probab=37.10 E-value=51 Score=22.36 Aligned_cols=29 Identities=17% Similarity=-0.073 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHcCCCCcCHHHHHHHH
Q 026790 89 AIRSFAMAELEARKLKYPNTGTEAFLMGI 117 (233)
Q Consensus 89 a~~vl~~A~~eA~~~~~~~I~~eHLLlaL 117 (233)
...+-..|...|+..+..+|..+|++.++
T Consensus 39 i~~la~eA~~~a~~~~rKTI~~~dI~~A~ 67 (76)
T 3b0c_W 39 LHRLAEEARTNAFENKSKIIKPEHTIAAA 67 (76)
T ss_dssp HHHHHHHHHHHHHHHTCSSBCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCCCCHHHHHHHH
Confidence 33344567788999999999999999886
No 56
>3b0b_C CENP-X, centromere protein X; histone fold, DNA binding, DNA, nucleus, DNA binding protein; 2.15A {Gallus gallus} PDB: 3vh5_D 3vh6_D
Probab=36.50 E-value=31 Score=24.23 Aligned_cols=28 Identities=14% Similarity=-0.045 Sum_probs=22.4
Q ss_pred HHHHHHHHHHHHHHHcCCCCcCHHHHHH
Q 026790 88 RAIRSFAMAELEARKLKYPNTGTEAFLM 115 (233)
Q Consensus 88 ~a~~vl~~A~~eA~~~~~~~I~~eHLLl 115 (233)
-+++++..|..+|..-|..+|+.+||=-
T Consensus 44 FV~EAv~RA~~~a~~e~~~~le~~~LEk 71 (81)
T 3b0b_C 44 FVREAAARAARQAQAEDLEKVDIEHVEK 71 (81)
T ss_dssp HHHHHHHHHHHHHHHTTCSEECHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCCeecHHHHHH
Confidence 3556777788888888999999999844
No 57
>2ooa_A E3 ubiquitin-protein ligase CBL-B; alpha-helical domain; 1.56A {Homo sapiens} PDB: 2oob_A 2jnh_A 2do6_A
Probab=35.31 E-value=24 Score=22.82 Aligned_cols=26 Identities=15% Similarity=0.153 Sum_probs=22.1
Q ss_pred HHHHhCCCCHHHHHHHHHHhcCcccc
Q 026790 205 KILATLGFNDEKAKEIAKSINEDTIL 230 (233)
Q Consensus 205 ~iL~~lGvd~~~l~~~i~~~~~~~~~ 230 (233)
.-|-.+|.+++++.+++...++++.+
T Consensus 16 a~Lm~mGFsr~~ai~AL~~a~nnve~ 41 (52)
T 2ooa_A 16 AKLMGEGYAFEEVKRALEIAQNNVEV 41 (52)
T ss_dssp HHHHHTTCCHHHHHHHHHHTTTCHHH
T ss_pred HHHHHcCCCHHHHHHHHHHhCCCHHH
Confidence 45778999999999999999988764
No 58
>3tl8_B Effector protein hopab2; plant immunity, solanum lycopersicum, triggered immunity, bacterial pathogenesis, transferase-LIG complex; HET: TPO; 2.50A {Pseudomonas syringae PV}
Probab=35.21 E-value=38 Score=25.17 Aligned_cols=26 Identities=15% Similarity=0.148 Sum_probs=22.3
Q ss_pred hHHHHHHHcCCCHHHHHHHHHHHhCC
Q 026790 124 TTAKFLRANGITLFKVREETLNLLGK 149 (233)
Q Consensus 124 ~a~~iL~~~Gvd~~~lr~~l~~~L~~ 149 (233)
.+-+-|.++|||.+.||.++++++-.
T Consensus 42 ~AL~~L~qqGvdmerLraAle~~im~ 67 (117)
T 3tl8_B 42 AALRGLVQQGVNLEHLRTALERHVMQ 67 (117)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHh
Confidence 45677889999999999999998865
No 59
>1id3_B Histone H4; nucleosome core particle, chromatin, protein/DNA interaction, nucleoprotein, supercoiled DNA; 3.10A {Saccharomyces cerevisiae} SCOP: a.22.1.1
Probab=34.90 E-value=45 Score=24.24 Aligned_cols=36 Identities=3% Similarity=-0.123 Sum_probs=31.5
Q ss_pred hcHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHhhc
Q 026790 85 WSARAIRSFAMAELEARKLKYPNTGTEAFLMGILVE 120 (233)
Q Consensus 85 fT~~a~~vl~~A~~eA~~~~~~~I~~eHLLlaLL~e 120 (233)
....+.+++..|...|...+-.+|+++.+.++|=..
T Consensus 58 le~fi~~I~~dA~~~a~HakRKTVt~~DV~~ALkr~ 93 (102)
T 1id3_B 58 LKSFLESVIRDSVTYTEHAKRKTVTSLDVVYALKRQ 93 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHcCCCcCcHHHHHHHHHHc
Confidence 466778888999999999999999999999998654
No 60
>1n1j_B NF-YC; histone-like PAIR, DNA binding protein; 1.67A {Homo sapiens} SCOP: a.22.1.3
Probab=34.69 E-value=41 Score=24.05 Aligned_cols=32 Identities=13% Similarity=-0.061 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHcCCCCcCHHHHHHHHhhcCC
Q 026790 91 RSFAMAELEARKLKYPNTGTEAFLMGILVEGT 122 (233)
Q Consensus 91 ~vl~~A~~eA~~~~~~~I~~eHLLlaLL~e~~ 122 (233)
.+...|.+.|...+...|.+.||.+++-.++.
T Consensus 56 ~l~~~A~~~a~~~krktI~~~di~~Av~~~e~ 87 (97)
T 1n1j_B 56 ELTLRAWIHTEDNKRRTLQRNDIAMAITKFDQ 87 (97)
T ss_dssp HHHHHHHHHHHHTTCSEECHHHHHHHHTTCGG
T ss_pred HHHHHHHHHHHHcCCccCCHHHHHHHHhcCcH
Confidence 45566778888899999999999999877653
No 61
>2lf3_A Effector protein hopab3; type III effector, structural genomics, PSI-biology, protein structure initiative; NMR {Pseudomonas syringae PV}
Probab=34.57 E-value=35 Score=24.97 Aligned_cols=26 Identities=19% Similarity=0.192 Sum_probs=21.5
Q ss_pred hHHHHHHHcCCCHHHHHHHHHHHhCC
Q 026790 124 TTAKFLRANGITLFKVREETLNLLGK 149 (233)
Q Consensus 124 ~a~~iL~~~Gvd~~~lr~~l~~~L~~ 149 (233)
.+-+-|.++|||.+.+|.++++++-.
T Consensus 36 aaL~~L~qqGvdmerLraAle~~i~~ 61 (107)
T 2lf3_A 36 AALQALAQNGINMEDLRAALEAYIVW 61 (107)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHh
Confidence 34567788899999999999998865
No 62
>2hue_C Histone H4; mini beta sheet, elongated beta sandwhich, DNA binding prote; 1.70A {Xenopus laevis} SCOP: a.22.1.1 PDB: 3nqj_B 1aoi_B 3kwq_B* 1hio_D 2yfv_B
Probab=34.17 E-value=39 Score=23.50 Aligned_cols=36 Identities=6% Similarity=-0.116 Sum_probs=32.1
Q ss_pred hcHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHhhc
Q 026790 85 WSARAIRSFAMAELEARKLKYPNTGTEAFLMGILVE 120 (233)
Q Consensus 85 fT~~a~~vl~~A~~eA~~~~~~~I~~eHLLlaLL~e 120 (233)
....+.+++..|...|...+-..|+++.+.++|=..
T Consensus 40 l~~~~~~I~~dA~~~a~ha~RKTvt~~DV~~Alk~~ 75 (84)
T 2hue_C 40 LKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQ 75 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTTTT
T ss_pred HHHHHHHHHHHHHHHHHHcCCCcCcHHHHHHHHHHc
Confidence 577888999999999999999999999999998544
No 63
>2d9s_A CBL E3 ubiquitin protein ligase; UBA domain, dimer, protein binding, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=32.75 E-value=25 Score=22.84 Aligned_cols=26 Identities=8% Similarity=0.174 Sum_probs=21.7
Q ss_pred HHHHhCCCCHHHHHHHHHHhcCcccc
Q 026790 205 KILATLGFNDEKAKEIAKSINEDTIL 230 (233)
Q Consensus 205 ~iL~~lGvd~~~l~~~i~~~~~~~~~ 230 (233)
.-|-.+|.+++++.+++...++++.|
T Consensus 14 ~~L~~lGF~r~~ai~AL~~a~nnve~ 39 (53)
T 2d9s_A 14 ERLMSQGYSYQDIQKALVIAHNNIEM 39 (53)
T ss_dssp HHHHHHTCCHHHHHHHHHHTTTCHHH
T ss_pred HHHHHcCCCHHHHHHHHHHhcCCHHH
Confidence 46777899999999999998888754
No 64
>1jfi_A Transcription regulator NC2 alpha chain; histone, H2A/H2B, tata-DNA, transcription initiation, NC2, negative cofactor, structural genomics, PSI; 2.62A {Homo sapiens} SCOP: a.22.1.3
Probab=32.15 E-value=21 Score=25.81 Aligned_cols=33 Identities=15% Similarity=0.002 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHcCCCCcCHHHHHHHHhhcCC
Q 026790 90 IRSFAMAELEARKLKYPNTGTEAFLMGILVEGT 122 (233)
Q Consensus 90 ~~vl~~A~~eA~~~~~~~I~~eHLLlaLL~e~~ 122 (233)
.++.+.|.+.|+..+...|.+.||-+++-.++.
T Consensus 47 ~el~~~A~~~a~~~krktI~~~di~~av~~~e~ 79 (98)
T 1jfi_A 47 ESLLKKACQVTQSRNAKTMTTSHLKQCIELEGD 79 (98)
T ss_dssp HHHHHHHHHHHHTC---CBCHHHHHTTCC----
T ss_pred HHHHHHHHHHHHHcCCCeecHHHHHHHHhcCch
Confidence 345677888899999999999999999887654
No 65
>1taf_A TFIID TBP associated factor 42; transcription initiation, histone fold, complex (TWO transcr factors); 2.00A {Drosophila melanogaster} SCOP: a.22.1.3
Probab=31.89 E-value=74 Score=21.42 Aligned_cols=32 Identities=16% Similarity=-0.040 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHhh
Q 026790 165 QAQRALDWAFNEKLKSGESGEITTNHLLLGIWS 197 (233)
Q Consensus 165 ~~~kvLe~A~~~A~~~g~~~~I~teHLLLALl~ 197 (233)
-+..+++.|..+|.-.|. +.|..+.+=||+=.
T Consensus 34 y~~~il~dA~~~a~HAgr-ktv~~eDVkLAi~~ 65 (68)
T 1taf_A 34 YVTSILDDAKVYANHARK-KTIDLDDVRLATEV 65 (68)
T ss_dssp HHHHHHHHHHHHHHHTTC-SSBCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCC-CCCCHHHHHHHHHh
Confidence 467899999999999999 99999999998753
No 66
>3b0c_W CENP-W, centromere protein W; histone fold, DNA binding, DNA binding protein; HET: CIT; 2.20A {Gallus gallus} PDB: 3b0d_W* 3vh5_W 3vh6_W
Probab=29.89 E-value=72 Score=21.57 Aligned_cols=27 Identities=11% Similarity=0.042 Sum_probs=21.0
Q ss_pred HHHHHHHHHHHcCCCCCCCHHHHHHHHh
Q 026790 169 ALDWAFNEKLKSGESGEITTNHLLLGIW 196 (233)
Q Consensus 169 vLe~A~~~A~~~g~~~~I~teHLLLALl 196 (233)
+-..|...|...+. .-|+.+||+.|+=
T Consensus 42 la~eA~~~a~~~~r-KTI~~~dI~~A~~ 68 (76)
T 3b0c_W 42 LAEEARTNAFENKS-KIIKPEHTIAAAK 68 (76)
T ss_dssp HHHHHHHHHHHHTC-SSBCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCC-CCCCHHHHHHHHH
Confidence 33446677778888 9999999998874
No 67
>2ly8_A Budding yeast chaperone SCM3; centromere protein, CENH3 variants, partially unfolded; NMR {Saccharomyces cerevisiae}
Probab=29.51 E-value=72 Score=24.04 Aligned_cols=36 Identities=3% Similarity=0.001 Sum_probs=30.0
Q ss_pred CHHHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHhhCC
Q 026790 163 TEQAQRALDWAFNEKLKSGESGEITTNHLLLGIWSEK 199 (233)
Q Consensus 163 S~~~~kvLe~A~~~A~~~g~~~~I~teHLLLALl~~~ 199 (233)
-.-+.+++.+|+.++.-.|- +.|+++++.+||=...
T Consensus 78 ~~~l~~i~rdav~yaehA~R-KTVta~DV~~Alkr~G 113 (121)
T 2ly8_A 78 KSFLESVIRDSVTYTEHAKR-KTVTSLDVVYALKRQG 113 (121)
T ss_dssp HHHHHHHHHHHHHHHHHTTC-CCBCHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHhcCC-CcCcHHHHHHHHHhCC
Confidence 34467788899999999999 9999999999987643
No 68
>1taf_B TFIID TBP associated factor 62; transcription initiation, histone fold, complex (TWO transcr factors); 2.00A {Drosophila melanogaster} SCOP: a.22.1.3
Probab=29.19 E-value=94 Score=21.04 Aligned_cols=32 Identities=6% Similarity=0.061 Sum_probs=27.9
Q ss_pred CHHHHHHHHHHHHHHHHcCCCCCCCHHHHHHHH
Q 026790 163 TEQAQRALDWAFNEKLKSGESGEITTNHLLLGI 195 (233)
Q Consensus 163 S~~~~kvLe~A~~~A~~~g~~~~I~teHLLLAL 195 (233)
...+.++++.|...++-.|. ..+++++|=.||
T Consensus 37 Eyr~~eI~qeA~kfmrHakR-k~Lt~~DI~~Al 68 (70)
T 1taf_B 37 SIKLKRIVQDAAKFMNHAKR-QKLSVRDIDMSL 68 (70)
T ss_dssp HHHHHHHHHHHHHHHHHTTC-SSBCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCC-CeecHHHHHHHH
Confidence 45678889999999999999 999999998776
No 69
>3ksy_A SOS-1, SON of sevenless homolog 1; RAS, RAS activator, disease mutation, guanine-nucleotide releasing factor, signaling protein; 3.18A {Homo sapiens} PDB: 1xd4_A 1xdv_A 1q9c_A
Probab=28.81 E-value=1.6e+02 Score=29.74 Aligned_cols=34 Identities=3% Similarity=0.065 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHHHHcCCCCcCHHHHHHHHhhcCC
Q 026790 89 AIRSFAMAELEARKLKYPNTGTEAFLMGILVEGT 122 (233)
Q Consensus 89 a~~vl~~A~~eA~~~~~~~I~~eHLLlaLL~e~~ 122 (233)
+.++++.|-++|+..++..|+|.|+.+|+-++..
T Consensus 138 ~~~~l~la~~~~~~~~~~~i~p~~~~~ai~~d~e 171 (1049)
T 3ksy_A 138 SADILKLVGNYVRNIRHYEITKQDIKVAMCADKV 171 (1049)
T ss_dssp HHHHHHHHHHHHHHTTCCBCCHHHHHHHHHHCSS
T ss_pred HHHHHHHHHHHHHHcCCceecCccccccccCCHH
Confidence 3578999999999999999999999999998764
No 70
>4dra_E Centromere protein X; DNA binding complex, DNA damage repair, histone-fold, DNA BI protein; 2.41A {Homo sapiens} PDB: 4drb_J
Probab=28.18 E-value=66 Score=22.71 Aligned_cols=27 Identities=4% Similarity=-0.043 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHcCCCCcCHHHHHH
Q 026790 89 AIRSFAMAELEARKLKYPNTGTEAFLM 115 (233)
Q Consensus 89 a~~vl~~A~~eA~~~~~~~I~~eHLLl 115 (233)
+++++..|..+|..-+..+|+.+||=-
T Consensus 49 V~EAv~RA~~~a~~e~~~~le~e~LEk 75 (84)
T 4dra_E 49 VVEAAVRGVRQAQAEDALRVDVDQLEK 75 (84)
T ss_dssp HHHHHHHHHHHHHHTTCSSBCHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCcccHHHHHH
Confidence 456667777778878899999999854
No 71
>2dzn_B 26S protease regulatory subunit 6B homolog; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} PDB: 2dzo_B
Probab=28.04 E-value=77 Score=21.32 Aligned_cols=35 Identities=9% Similarity=-0.093 Sum_probs=30.5
Q ss_pred CHHHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHhhC
Q 026790 163 TEQAQRALDWAFNEKLKSGESGEITTNHLLLGIWSE 198 (233)
Q Consensus 163 S~~~~kvLe~A~~~A~~~g~~~~I~teHLLLALl~~ 198 (233)
..++..+...|...|.+.+. ..|+.+|+.-|+-..
T Consensus 34 GADi~~l~~eAa~~ai~~~~-~~i~~~df~~Al~~v 68 (82)
T 2dzn_B 34 GAVIAAIMQEAGLRAVRKNR-YVILQSDLEEAYATQ 68 (82)
T ss_dssp HHHHHHHHHHHHHHHHHTTC-SEECHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHhcc-CCcCHHHHHHHHHHH
Confidence 45789999999999998888 899999999888765
No 72
>3ksy_A SOS-1, SON of sevenless homolog 1; RAS, RAS activator, disease mutation, guanine-nucleotide releasing factor, signaling protein; 3.18A {Homo sapiens} PDB: 1xd4_A 1xdv_A 1q9c_A
Probab=27.04 E-value=65 Score=32.67 Aligned_cols=34 Identities=18% Similarity=0.110 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCHHHHHHHHhhCCC
Q 026790 166 AQRALDWAFNEKLKSGESGEITTNHLLLGIWSEKE 200 (233)
Q Consensus 166 ~~kvLe~A~~~A~~~g~~~~I~teHLLLALl~~~~ 200 (233)
+.++|+.|.++|+...+ ..|++.||.+|+-.++.
T Consensus 138 ~~~~l~la~~~~~~~~~-~~i~p~~~~~ai~~d~e 171 (1049)
T 3ksy_A 138 SADILKLVGNYVRNIRH-YEITKQDIKVAMCADKV 171 (1049)
T ss_dssp HHHHHHHHHHHHHHTTC-CBCCHHHHHHHHHHCSS
T ss_pred HHHHHHHHHHHHHHcCC-ceecCccccccccCCHH
Confidence 35799999999999999 99999999999988764
No 73
>2dzn_B 26S protease regulatory subunit 6B homolog; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} PDB: 2dzo_B
Probab=26.89 E-value=80 Score=21.23 Aligned_cols=34 Identities=12% Similarity=-0.106 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHhhc
Q 026790 87 ARAIRSFAMAELEARKLKYPNTGTEAFLMGILVE 120 (233)
Q Consensus 87 ~~a~~vl~~A~~eA~~~~~~~I~~eHLLlaLL~e 120 (233)
.+..++...|.-.|.+.+...|+.+|+..++-.-
T Consensus 35 ADi~~l~~eAa~~ai~~~~~~i~~~df~~Al~~v 68 (82)
T 2dzn_B 35 AVIAAIMQEAGLRAVRKNRYVILQSDLEEAYATQ 68 (82)
T ss_dssp HHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHhccCCcCHHHHHHHHHHH
Confidence 5677888899999999988899999988887654
No 74
>1n1j_A NF-YB; histone-like PAIR, DNA binding protein; 1.67A {Homo sapiens} SCOP: a.22.1.3
Probab=26.14 E-value=96 Score=21.70 Aligned_cols=35 Identities=14% Similarity=0.092 Sum_probs=27.4
Q ss_pred hhcHHHHHHHHHH------------HHHHHHcCCCCcCHHHHHHHHh
Q 026790 84 KWSARAIRSFAMA------------ELEARKLKYPNTGTEAFLMGIL 118 (233)
Q Consensus 84 rfT~~a~~vl~~A------------~~eA~~~~~~~I~~eHLLlaLL 118 (233)
+++..+..++..| ...|...+..+|.++|++.++=
T Consensus 27 ~is~dA~~~l~~a~e~Fi~~l~~~A~~~a~~~kRkTI~~~Dv~~Al~ 73 (93)
T 1n1j_A 27 KIAKDAKECVQECVSEFISFITSEASERCHQEKRKTINGEDILFAMS 73 (93)
T ss_dssp EECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHH
T ss_pred eeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHH
Confidence 6777777666554 4557888999999999999984
No 75
>4esf_A PADR-like transcriptional regulator; PADR family, DNA binding protein, HTH fold; 2.20A {Bacillus cereus}
Probab=25.80 E-value=77 Score=23.09 Aligned_cols=38 Identities=21% Similarity=0.222 Sum_probs=29.7
Q ss_pred HHHHHHHHhhCCCchHHHHHHhC------CCCHHHHHHHHHHhc
Q 026790 188 TNHLLLGIWSEKESAGHKILATL------GFNDEKAKEIAKSIN 225 (233)
Q Consensus 188 teHLLLALl~~~~~~~~~iL~~l------Gvd~~~l~~~i~~~~ 225 (233)
.+.++|++|.+.+.++..+.+.+ +++...+...+..+-
T Consensus 12 l~~~IL~lL~~~p~~Gyei~~~l~~~g~~~is~gtlY~~L~rLe 55 (117)
T 4esf_A 12 LEGCVLEIISRRETYGYEITRHLNDLGFTEVVEGTVYTILVRLE 55 (117)
T ss_dssp HHHHHHHHHHHSCBCHHHHHHHHHHHTCTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHcCCCCCCccHHHHHHHHHH
Confidence 46778888887777887788776 788888888887754
No 76
>3b0c_T CENP-T, centromere protein T; histone fold, DNA binding, DNA binding protein; HET: CIT; 2.20A {Gallus gallus} PDB: 3b0d_T* 3vh5_T 3vh6_T
Probab=25.59 E-value=72 Score=23.46 Aligned_cols=35 Identities=6% Similarity=-0.103 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHhhCCC
Q 026790 165 QAQRALDWAFNEKLKSGESGEITTNHLLLGIWSEKE 200 (233)
Q Consensus 165 ~~~kvLe~A~~~A~~~g~~~~I~teHLLLALl~~~~ 200 (233)
-+..+...|..+|...|- +.|+.+++.+|+=..+.
T Consensus 40 f~~~v~~da~~~A~HA~R-KTV~~eDV~lalrr~g~ 74 (111)
T 3b0c_T 40 YFKQISSDLEAYSQHAGR-KTVEMADVELLMRRQGL 74 (111)
T ss_dssp HHHHHHHHHHHHHHHTTC-SEECHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHcCC-CcCCHHHHHHHHHHCCC
Confidence 346788888999999999 99999999999987654
No 77
>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A
Probab=25.35 E-value=64 Score=22.24 Aligned_cols=26 Identities=15% Similarity=0.346 Sum_probs=22.0
Q ss_pred chHHHHHHhCCCCHHHHHHHHHHhcC
Q 026790 201 SAGHKILATLGFNDEKAKEIAKSINE 226 (233)
Q Consensus 201 ~~~~~iL~~lGvd~~~l~~~i~~~~~ 226 (233)
..+.++-+.+|+++..+.+.+..+..
T Consensus 28 ~t~~eLA~~Lgvsr~tV~~~L~~Le~ 53 (81)
T 1qbj_A 28 TTAHDLSGKLGTPKKEINRVLYSLAK 53 (81)
T ss_dssp BCHHHHHHHHTCCHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 45678889999999999999988753
No 78
>1n1j_A NF-YB; histone-like PAIR, DNA binding protein; 1.67A {Homo sapiens} SCOP: a.22.1.3
Probab=25.26 E-value=1e+02 Score=21.59 Aligned_cols=37 Identities=11% Similarity=0.157 Sum_probs=27.2
Q ss_pred CcCCHHHHHHHHH------------HHHHHHHcCCCCCCCHHHHHHHHhh
Q 026790 160 PPLTEQAQRALDW------------AFNEKLKSGESGEITTNHLLLGIWS 197 (233)
Q Consensus 160 ~~~S~~~~kvLe~------------A~~~A~~~g~~~~I~teHLLLALl~ 197 (233)
..+|.++..+|.. |+..|...+- ..|..+|++.|+=.
T Consensus 26 ~~is~dA~~~l~~a~e~Fi~~l~~~A~~~a~~~kR-kTI~~~Dv~~Al~~ 74 (93)
T 1n1j_A 26 GKIAKDAKECVQECVSEFISFITSEASERCHQEKR-KTINGEDILFAMST 74 (93)
T ss_dssp CEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC-SSBCHHHHHHHHHH
T ss_pred ceeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CccCHHHHHHHHHH
Confidence 3466666655554 5566777788 89999999999953
No 79
>3f8b_A Transcriptional regulator, PADR-like family; winged helix turn helix, transcription regulator; 2.00A {Lactococcus lactis subsp} SCOP: a.4.5.0 PDB: 3f8c_A* 3f8f_A*
Probab=24.88 E-value=83 Score=22.78 Aligned_cols=38 Identities=21% Similarity=0.303 Sum_probs=29.1
Q ss_pred HHHHHHHHhhCCCchHHHHHHhC--------CCCHHHHHHHHHHhc
Q 026790 188 TNHLLLGIWSEKESAGHKILATL--------GFNDEKAKEIAKSIN 225 (233)
Q Consensus 188 teHLLLALl~~~~~~~~~iL~~l--------Gvd~~~l~~~i~~~~ 225 (233)
.+.++|++|.+.+.++..+.+.+ +++...+...+..+-
T Consensus 13 l~~~IL~~L~~~~~~Gyei~~~l~~~~~~~~~i~~gtly~~L~rLe 58 (116)
T 3f8b_A 13 TNVILLNVLKQGDNYVYGIIKQVKEASNGEMELNEATLYTIFKRLE 58 (116)
T ss_dssp HHHHHHHHHHHCCBCHHHHHHHHHHHTTTCCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHhCCCCCCCcchHHHHHHHHH
Confidence 56778888887777777777664 789998888887764
No 80
>1oyi_A Double-stranded RNA-binding protein; (alpha+beta) helix-turn-helix, viral protein; NMR {Vaccinia virus} SCOP: a.4.5.19
Probab=24.63 E-value=1.4e+02 Score=20.83 Aligned_cols=38 Identities=3% Similarity=0.038 Sum_probs=28.2
Q ss_pred HHHHHHHHhhCCCchHHHHHHhCCCCHHHHHHHHHHhc
Q 026790 188 TNHLLLGIWSEKESAGHKILATLGFNDEKAKEIAKSIN 225 (233)
Q Consensus 188 teHLLLALl~~~~~~~~~iL~~lGvd~~~l~~~i~~~~ 225 (233)
+..-+|.+|......+.++=+.+|+++..+.+.+..+-
T Consensus 18 ~~~~IL~lL~~~g~sa~eLAk~LgiSk~aVr~~L~~Le 55 (82)
T 1oyi_A 18 IVCEAIKTIGIEGATAAQLTRQLNMEKREVNKALYDLQ 55 (82)
T ss_dssp HHHHHHHHHSSSTEEHHHHHHHSSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHHHHH
Confidence 33444455655446678888899999999999998874
No 81
>3vlf_B 26S protease regulatory subunit 7 homolog; heat repeat, chaperone, chaperone-protein binding complex; HET: DNA; 3.80A {Saccharomyces cerevisiae} PDB: 4a3v_B*
Probab=24.26 E-value=1.1e+02 Score=20.89 Aligned_cols=33 Identities=15% Similarity=0.040 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHhh
Q 026790 87 ARAIRSFAMAELEARKLKYPNTGTEAFLMGILV 119 (233)
Q Consensus 87 ~~a~~vl~~A~~eA~~~~~~~I~~eHLLlaLL~ 119 (233)
.++.+++..|.-.|.+.+...|+.+|+..|+-.
T Consensus 38 ADl~~l~~eAa~~a~r~~~~~i~~~df~~Al~~ 70 (88)
T 3vlf_B 38 AELRSVCTEAGMFAIRARRKVATEKDFLKAVDK 70 (88)
T ss_dssp HHHHHHHHHHHHHHHHHSCSSBCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccccCCHHHHHHHHHH
Confidence 367888888888998888888899988888754
No 82
>1taf_A TFIID TBP associated factor 42; transcription initiation, histone fold, complex (TWO transcr factors); 2.00A {Drosophila melanogaster} SCOP: a.22.1.3
Probab=24.20 E-value=1.2e+02 Score=20.27 Aligned_cols=32 Identities=6% Similarity=-0.023 Sum_probs=27.3
Q ss_pred cHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHH
Q 026790 86 SARAIRSFAMAELEARKLKYPNTGTEAFLMGI 117 (233)
Q Consensus 86 T~~a~~vl~~A~~eA~~~~~~~I~~eHLLlaL 117 (233)
-.-+.+++..|..+|...|...|+.+-+=|++
T Consensus 32 ~ry~~~il~dA~~~a~HAgrktv~~eDVkLAi 63 (68)
T 1taf_A 32 FRYVTSILDDAKVYANHARKKTIDLDDVRLAT 63 (68)
T ss_dssp HHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHH
Confidence 44567788999999999999999999988876
No 83
>3b0b_C CENP-X, centromere protein X; histone fold, DNA binding, DNA, nucleus, DNA binding protein; 2.15A {Gallus gallus} PDB: 3vh5_D 3vh6_D
Probab=23.76 E-value=68 Score=22.41 Aligned_cols=23 Identities=13% Similarity=0.125 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHcCCCCCCCHHHH
Q 026790 168 RALDWAFNEKLKSGESGEITTNHL 191 (233)
Q Consensus 168 kvLe~A~~~A~~~g~~~~I~teHL 191 (233)
+++..|..+|..-|. ++|..+||
T Consensus 47 EAv~RA~~~a~~e~~-~~le~~~L 69 (81)
T 3b0b_C 47 EAAARAARQAQAEDL-EKVDIEHV 69 (81)
T ss_dssp HHHHHHHHHHHHTTC-SEECHHHH
T ss_pred HHHHHHHHHHHhCCC-CeecHHHH
Confidence 445556666666787 89999997
No 84
>3vlf_B 26S protease regulatory subunit 7 homolog; heat repeat, chaperone, chaperone-protein binding complex; HET: DNA; 3.80A {Saccharomyces cerevisiae} PDB: 4a3v_B*
Probab=23.15 E-value=1.2e+02 Score=20.64 Aligned_cols=36 Identities=8% Similarity=-0.091 Sum_probs=30.6
Q ss_pred CHHHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHhhCC
Q 026790 163 TEQAQRALDWAFNEKLKSGESGEITTNHLLLGIWSEK 199 (233)
Q Consensus 163 S~~~~kvLe~A~~~A~~~g~~~~I~teHLLLALl~~~ 199 (233)
..++..+...|...|.+.+. ..|+.+|+.-|+-...
T Consensus 37 GADl~~l~~eAa~~a~r~~~-~~i~~~df~~Al~~v~ 72 (88)
T 3vlf_B 37 GAELRSVCTEAGMFAIRARR-KVATEKDFLKAVDKVI 72 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHSC-SSBCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHhcc-ccCCHHHHHHHHHHHh
Confidence 45689999999999988888 8999999999987643
No 85
>1jgs_A Multiple antibiotic resistance protein MARR; transcription regulation, DNA-binding, repressor, transcription; HET: SAL; 2.30A {Escherichia coli} SCOP: a.4.5.28
Probab=23.06 E-value=2e+02 Score=20.21 Aligned_cols=37 Identities=8% Similarity=0.012 Sum_probs=27.7
Q ss_pred HHHHHHHhhCCCchHHHHHHhCCCCHHHHHHHHHHhc
Q 026790 189 NHLLLGIWSEKESAGHKILATLGFNDEKAKEIAKSIN 225 (233)
Q Consensus 189 eHLLLALl~~~~~~~~~iL~~lGvd~~~l~~~i~~~~ 225 (233)
-++|..|...+.....++-+.+|+++..+.+.++.+-
T Consensus 37 ~~iL~~l~~~~~~~~~~la~~l~~~~~tvs~~l~~L~ 73 (138)
T 1jgs_A 37 FKVLCSIRCAACITPVELKKVLSVDLGALTRMLDRLV 73 (138)
T ss_dssp HHHHHHHHHHSSBCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCHHHHHHHHCCChHHHHHHHHHHH
Confidence 3456666665555667888889999999999887764
No 86
>3b0c_T CENP-T, centromere protein T; histone fold, DNA binding, DNA binding protein; HET: CIT; 2.20A {Gallus gallus} PDB: 3b0d_T* 3vh5_T 3vh6_T
Probab=22.83 E-value=95 Score=22.78 Aligned_cols=37 Identities=5% Similarity=-0.130 Sum_probs=31.7
Q ss_pred cHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHhhcCC
Q 026790 86 SARAIRSFAMAELEARKLKYPNTGTEAFLMGILVEGT 122 (233)
Q Consensus 86 T~~a~~vl~~A~~eA~~~~~~~I~~eHLLlaLL~e~~ 122 (233)
..-+.++...|...|...|..+|+.+.+.+++=.++.
T Consensus 38 ~~f~~~v~~da~~~A~HA~RKTV~~eDV~lalrr~g~ 74 (111)
T 3b0c_T 38 ERYFKQISSDLEAYSQHAGRKTVEMADVELLMRRQGL 74 (111)
T ss_dssp HHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHHCCC
Confidence 4455778888999999999999999999999987664
No 87
>1xmk_A Double-stranded RNA-specific adenosine deaminase; winged helix-turn-helix, RNA editing, interferon, ADAR1, hydrolase; 0.97A {Homo sapiens} SCOP: a.4.5.19
Probab=22.68 E-value=57 Score=22.56 Aligned_cols=37 Identities=5% Similarity=0.214 Sum_probs=27.4
Q ss_pred HHHHHHhhCCCchHHHHHHhCCCCHH-HHHHHHHHhcC
Q 026790 190 HLLLGIWSEKESAGHKILATLGFNDE-KAKEIAKSINE 226 (233)
Q Consensus 190 HLLLALl~~~~~~~~~iL~~lGvd~~-~l~~~i~~~~~ 226 (233)
-||.-|.......+..+-+.+|++.. ++.+.+..+-+
T Consensus 15 ~IL~~Lk~~g~~ta~eiA~~Lgit~~~aVr~hL~~Le~ 52 (79)
T 1xmk_A 15 KICDYLFNVSDSSALNLAKNIGLTKARDINAVLIDMER 52 (79)
T ss_dssp HHHHHHHHTCCEEHHHHHHHHCGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCcCHHHHHHHcCCCcHHHHHHHHHHHHH
Confidence 34444445556677888889999999 99999887653
No 88
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=22.59 E-value=2.4e+02 Score=23.41 Aligned_cols=58 Identities=17% Similarity=-0.020 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHHcCCCCcCHHHHHHHHhh---cCCChHHHHHHHcCCCHHHHHHHHHHHh
Q 026790 89 AIRSFAMAELEARKLKYPNTGTEAFLMGILV---EGTSTTAKFLRANGITLFKVREETLNLL 147 (233)
Q Consensus 89 a~~vl~~A~~eA~~~~~~~I~~eHLLlaLL~---e~~~~a~~iL~~~Gvd~~~lr~~l~~~L 147 (233)
+..++..|...|.-.|..+|+++|+..++-. ........ ....|++.+.+.+++-..+
T Consensus 266 ~~~ll~~a~a~A~l~g~~~v~~~dv~~~~~~vl~~r~~~~~~-~~~~~~~~~~i~~~i~~~~ 326 (331)
T 2r44_A 266 AINLNRVAKAMAFFNNRDYVLPEDIKEVAYDILNHRIILNYE-AEAEGISTRQIIETILRKV 326 (331)
T ss_dssp HHHHHHHHHHHHHHTTCSBCCHHHHHHHHHHHHTTTSEECHH-HHHTTCCHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhHhhccCCHH-HHhcCCCHHHHHHHHHhcC
Confidence 3455677777888888888998888665421 11110011 1235788888777775554
No 89
>4hbl_A Transcriptional regulator, MARR family; HTH, transcription factor, DNA binding; 2.50A {Staphylococcus epidermidis}
Probab=21.64 E-value=2.3e+02 Score=20.41 Aligned_cols=40 Identities=15% Similarity=0.313 Sum_probs=30.4
Q ss_pred CCHHHHHHHHhhCCCchHHHHHHhCCCCHHHHHHHHHHhc
Q 026790 186 ITTNHLLLGIWSEKESAGHKILATLGFNDEKAKEIAKSIN 225 (233)
Q Consensus 186 I~teHLLLALl~~~~~~~~~iL~~lGvd~~~l~~~i~~~~ 225 (233)
...-++|..|...+.....++-+.+|+++..+.+.+..+-
T Consensus 41 ~~q~~iL~~l~~~~~~~~~eLa~~l~~~~~~vs~~l~~L~ 80 (149)
T 4hbl_A 41 YSQYLVMLTLWEENPQTLNSIGRHLDLSSNTLTPMLKRLE 80 (149)
T ss_dssp HHHHHHHHHHHHSSSEEHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHH
Confidence 3445666777677666778888899999999998887753
No 90
>4dra_E Centromere protein X; DNA binding complex, DNA damage repair, histone-fold, DNA BI protein; 2.41A {Homo sapiens} PDB: 4drb_J
Probab=21.34 E-value=1.1e+02 Score=21.59 Aligned_cols=24 Identities=8% Similarity=0.021 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHcCCCCCCCHHHHH
Q 026790 168 RALDWAFNEKLKSGESGEITTNHLL 192 (233)
Q Consensus 168 kvLe~A~~~A~~~g~~~~I~teHLL 192 (233)
+++..|..+|..-|+ ++|..+||=
T Consensus 51 EAv~RA~~~a~~e~~-~~le~e~LE 74 (84)
T 4dra_E 51 EAAVRGVRQAQAEDA-LRVDVDQLE 74 (84)
T ss_dssp HHHHHHHHHHHHTTC-SSBCHHHHH
T ss_pred HHHHHHHHHHHhcCC-CcccHHHHH
Confidence 444556666666677 899999973
No 91
>3hhh_A Transcriptional regulator, PADR family; PF03551, structural PSI-2, protein structure initiative, midwest center for STR genomics, MCSG; 2.70A {Enterococcus faecalis} SCOP: a.4.5.0
Probab=20.65 E-value=1.1e+02 Score=22.19 Aligned_cols=38 Identities=24% Similarity=0.272 Sum_probs=30.2
Q ss_pred HHHHHHHHhhCCCchHHHHHHhC------CCCHHHHHHHHHHhc
Q 026790 188 TNHLLLGIWSEKESAGHKILATL------GFNDEKAKEIAKSIN 225 (233)
Q Consensus 188 teHLLLALl~~~~~~~~~iL~~l------Gvd~~~l~~~i~~~~ 225 (233)
.+.++|++|.+.+.++.++.+.+ +++...+...+..+-
T Consensus 14 l~~~IL~lL~~~p~~Gyei~~~l~~~g~~~is~gtlY~~L~rLe 57 (116)
T 3hhh_A 14 LEGLVLAIIQRKETYGYEITKILNDQGFTEIVEGTVYTILLRLE 57 (116)
T ss_dssp HHHHHHHHHHHSCBCHHHHHHHHHTTSCSSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHcCCCCCCccHHHHHHHHHH
Confidence 57788898887778887888775 688888888887764
No 92
>2pmy_A RAS and EF-hand domain-containing protein; rasef, calcium-binding domain, structural genomics, structural genomics consortium, SGC; 2.30A {Homo sapiens}
Probab=20.59 E-value=1.8e+02 Score=19.11 Aligned_cols=53 Identities=9% Similarity=0.076 Sum_probs=38.0
Q ss_pred CcCCHHHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHhhCCCchHHHHHHhCCCCHHHHHHHHHHhc
Q 026790 160 PPLTEQAQRALDWAFNEKLKSGESGEITTNHLLLGIWSEKESAGHKILATLGFNDEKAKEIAKSIN 225 (233)
Q Consensus 160 ~~~S~~~~kvLe~A~~~A~~~g~~~~I~teHLLLALl~~~~~~~~~iL~~lGvd~~~l~~~i~~~~ 225 (233)
..+++.-.+-+..++...-.-|+ .+|+.+.+.-+| ..+|++.+.+.+.+..+.
T Consensus 19 ~~l~~~~~~~l~~~F~~~D~d~~-G~I~~~El~~~l------------~~~g~~~~~~~~~~~~~D 71 (91)
T 2pmy_A 19 ADGDGEELARLRSVFAACDANRS-GRLEREEFRALC------------TELRVRPADAEAVFQRLD 71 (91)
T ss_dssp CHHHHHHHHHHHHHHHHHCTTCS-SSEEHHHHHHHH------------HHTTCCHHHHHHHHHHHC
T ss_pred ccCCHHHHHHHHHHHHHHCCCCC-CCCcHHHHHHHH------------HHcCcCHHHHHHHHHHhC
Confidence 34677778888888888777788 889888776544 344567777777776654
No 93
>2rdp_A Putative transcriptional regulator MARR; PFAM PF01047, winged-helix binding motif, structural genomics, PSI-2; 2.30A {Geobacillus stearothermophilus}
Probab=20.18 E-value=2.4e+02 Score=20.12 Aligned_cols=37 Identities=5% Similarity=0.027 Sum_probs=28.1
Q ss_pred HHHHHHHhhCCCchHHHHHHhCCCCHHHHHHHHHHhc
Q 026790 189 NHLLLGIWSEKESAGHKILATLGFNDEKAKEIAKSIN 225 (233)
Q Consensus 189 eHLLLALl~~~~~~~~~iL~~lGvd~~~l~~~i~~~~ 225 (233)
-++|..|...+.....++-+.+|++...+.+.+..+-
T Consensus 45 ~~iL~~l~~~~~~t~~ela~~l~~~~~tvs~~l~~Le 81 (150)
T 2rdp_A 45 FVALQWLLEEGDLTVGELSNKMYLACSTTTDLVDRME 81 (150)
T ss_dssp HHHHHHHHHHCSBCHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCHHHHHHHHCCCchhHHHHHHHHH
Confidence 3456666665556677888899999999999887764
Done!